BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781079|ref|YP_003065492.1| diguanylate cyclase
[Candidatus Liberibacter asiaticus str. psy62]
         (266 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781079|ref|YP_003065492.1| diguanylate cyclase [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040756|gb|ACT57552.1| diguanylate cyclase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 266

 Score =  534 bits (1376), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 266/266 (100%), Positives = 266/266 (100%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60
           MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG
Sbjct: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS
Sbjct: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF
Sbjct: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
           AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA
Sbjct: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240

Query: 241 DQALYVAKKSGRNRVVCFSDIENNTC 266
           DQALYVAKKSGRNRVVCFSDIENNTC
Sbjct: 241 DQALYVAKKSGRNRVVCFSDIENNTC 266


>gi|315122462|ref|YP_004062951.1| diguanylate cyclase [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495864|gb|ADR52463.1| diguanylate cyclase [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 259

 Score =  365 bits (938), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 206/259 (79%), Positives = 234/259 (90%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60
           MT+ LKD L IWL +EKNLESFSP+ FM YFSIFF+IFI ++IFI N+ LFYIGL PFYG
Sbjct: 1   MTKYLKDLLRIWLLYEKNLESFSPNAFMTYFSIFFTIFITSIIFITNVVLFYIGLIPFYG 60

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +EYIL+EN+SLVIISI ISL+LGYISGSILKELF++YN++S+LSRIDCLSGLLNHSAFIS
Sbjct: 61  VEYILLENISLVIISIVISLILGYISGSILKELFVAYNKMSRLSRIDCLSGLLNHSAFIS 120

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           +LGS +EKLSIVFFDID FK IND+FGHPVGDKVIAFLS++LV VF +PMFVGRLGGEEF
Sbjct: 121 NLGSCSEKLSIVFFDIDNFKFINDSFGHPVGDKVIAFLSEKLVYVFQSPMFVGRLGGEEF 180

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
           AAAALG SE+EAAILANDLRKIIENS I ISS   + ITISAGI+ERC+KEPISTI+Y+A
Sbjct: 181 AAAALGLSEKEAAILANDLRKIIENSFIKISSSQFVQITISAGISERCNKEPISTIVYQA 240

Query: 241 DQALYVAKKSGRNRVVCFS 259
           DQALYVAKK GRNRVVCF 
Sbjct: 241 DQALYVAKKLGRNRVVCFK 259


>gi|163760787|ref|ZP_02167867.1| probable urease-associated protein [Hoeflea phototrophica DFL-43]
 gi|162282109|gb|EDQ32400.1| probable urease-associated protein [Hoeflea phototrophica DFL-43]
          Length = 261

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/210 (37%), Positives = 114/210 (54%), Gaps = 3/210 (1%)

Query: 51  FYIGLTPFYGL-EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCL 109
           ++ GL P+  + + + +  +    I+ TIS+      G  + +L +S + +  LSR D L
Sbjct: 38  YFSGLMPYEKMGDALFLATVLTPPIAFTISVAAYIAVGFAIHDLGVSRDELEWLSRTDML 97

Query: 110 SGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
           SGL N  AF+++  +   + ++V FDID FK +ND+ GH  GDKVI  +++ L  VFG  
Sbjct: 98  SGLANRRAFLTAFETTEGEKTMVVFDIDRFKTVNDSHGHSAGDKVIGEVANMLSTVFGDR 157

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               RLGGEEFA  +      E A L+   R  I   QI +     + +T+SAGIA    
Sbjct: 158 SLCARLGGEEFAVFSGEVPFGEFAALSELARMRIAGLQIEVDD-SVVQVTVSAGIARCSE 216

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV-CF 258
            E  S    RAD+ LY AK SGRNRV+ CF
Sbjct: 217 NETFSQTFSRADKLLYRAKTSGRNRVMFCF 246


>gi|19070379|gb|AAL83832.1|AF347070_9 urease-associated hypothetical protein [Rhizobium leguminosarum bv.
           viciae]
          Length = 287

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/232 (34%), Positives = 112/232 (48%), Gaps = 1/232 (0%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           + F +  S    I    +I +    L  +GL P      I    +   +I  T+S +L  
Sbjct: 21  YVFALKMSFLAVILSGVIIALTMPSLDLLGLLPVTLAHAIGFSAIFSWLIGGTVSGMLSL 80

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQIND 144
            +G  +++L +S     +LSR D LSGLLN  AF  +L + +   S+V FD+D FK IND
Sbjct: 81  FAGFAMRDLALSRAEFEKLSRTDTLSGLLNRRAFTEALDNVDSNASLVIFDVDRFKAIND 140

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD VI  +S  L   F     V RLGGEEF     G   +        +R  I 
Sbjct: 141 RFGHGCGDAVIIAVSAMLTSAFDEMAVVARLGGEEFGVIVSGEPLEARMERIEGVRARIA 200

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  I  + G  I IT+S G+A+         +   AD+ALY+AK  GRNRVV
Sbjct: 201 SGAIK-AEGHEIRITVSGGVADLVTGRHKQAVYASADRALYLAKALGRNRVV 251


>gi|218680699|ref|ZP_03528596.1| urease-associated protein [Rhizobium etli CIAT 894]
          Length = 287

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 85/249 (34%), Positives = 122/249 (48%), Gaps = 5/249 (2%)

Query: 12  WLCHEKNLESFSPHTFMIYFSI---FFSIFIATVIFIANIF-LFYIGLTPFYGLEYILVE 67
           W+  + +  +F     +  F++   F ++ ++ VI    I  L ++GL P      +   
Sbjct: 4   WMSLQADFGNFQHRRNVYLFALKMSFLAVVLSGVIMSLTIPPLGFLGLLPVTLSHALGFG 63

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE 127
            +   ++  T+S +L   +G  L EL +S     +LSR D LSGLLN  AF  +L +   
Sbjct: 64  AIFSWLVGGTVSGMLSLAAGFALHELTLSRAEFEKLSRTDTLSGLLNRRAFSEALENTES 123

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
             S+V FD+D FK IND FGH  GD VI  +S  L   F     V RLGGEEF     G 
Sbjct: 124 NASLVIFDVDRFKAINDRFGHACGDAVITAVSAVLTSTFDELSVVARLGGEEFGVIVSGE 183

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
             +        +R  I    I ++ G +I ITIS G+A+         +   AD+ALY+A
Sbjct: 184 PLEARLERIQAVRARIAGGPI-VTEGHNIGITISGGVADLVAGRSKQQVYASADRALYLA 242

Query: 248 KKSGRNRVV 256
           K  GRNRVV
Sbjct: 243 KALGRNRVV 251


>gi|88798529|ref|ZP_01114113.1| GGDEF domain protein [Reinekea sp. MED297]
 gi|88778629|gb|EAR09820.1| GGDEF domain protein [Reinekea sp. MED297]
          Length = 476

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 99/173 (57%), Gaps = 8/173 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           + L    ++  QLS +D L+GL N   F   L +       Y++ LSI   DID+FK+IN
Sbjct: 301 RNLLTELHKERQLSMLDPLTGLPNRQGFDRRLSAELARAERYDQALSIAIIDIDFFKRIN 360

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGH VGDKV+  ++ ++  V     F+ R GGEEF      ++ +E     + LR+ +
Sbjct: 361 DEFGHLVGDKVLKMMAKEMKRVCRESDFLSRFGGEEFVLLLPQTTLEEGLTAVDKLRRHV 420

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E    +  + P +++T+SAG+A+R   E + + + RAD ALYV+K+ GRNRV 
Sbjct: 421 ETRPFHYQNTP-VNLTVSAGVAQRQVNETLESWLDRADAALYVSKREGRNRVT 472


>gi|190893128|ref|YP_001979670.1| urease-associated protein [Rhizobium etli CIAT 652]
 gi|190698407|gb|ACE92492.1| probable urease-associated protein [Rhizobium etli CIAT 652]
          Length = 282

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/230 (36%), Positives = 114/230 (49%), Gaps = 15/230 (6%)

Query: 34  FFSIFIATVIFIANIF-LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE 92
           F ++ ++ VI    I  L + GL P      I    +   ++  T+  +L   +G  + E
Sbjct: 25  FVAVILSGVILALTIPPLGFFGLLPMTLSHAIGFGAVFSWLVGGTVCGMLSLAAGFTMHE 84

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           L +S     +LSR D LSGLLN  AF  +L    +  S+V FD+D FK IND FGH  GD
Sbjct: 85  LTLSRAEFEKLSRTDTLSGLLNRRAFTEALDKAEDNASLVIFDVDRFKAINDRFGHACGD 144

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            VI  +S  L   F     V RLGGEEF    + S E EA +      K IE  +  I+S
Sbjct: 145 AVITAVSAVLRSAFDEMSVVARLGGEEF--GVIVSGELEARL------KRIEGVRARIAS 196

Query: 213 GP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G        I IT+S G+A+         +   AD+ALY+AK  GRNRVV
Sbjct: 197 GAIAADGHDIRITVSGGVADLAAGRSKQAVYASADRALYLAKALGRNRVV 246


>gi|241205995|ref|YP_002977091.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240859885|gb|ACS57552.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 286

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/244 (34%), Positives = 116/244 (47%), Gaps = 6/244 (2%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV 72
           L + KN+     + F +  +    I    +I +    L  +GL P      I    +   
Sbjct: 14  LQYRKNV-----YVFALKMAFLAVILSGVIIALTMPSLDLLGLLPVTLAHAIGFSAIFSW 68

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIV 132
           +I  T+S +L   +G  +++L +S     +LSR D LSGLLN  AF  +L + +   S+V
Sbjct: 69  LIGGTVSGMLSLFAGFAMRDLALSRAEFEKLSRTDTLSGLLNRRAFTEALENTDGDASLV 128

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            FD+D FK IND FGH  GD VI  +S  L   F     V RLGGEEF     G   +  
Sbjct: 129 IFDVDRFKTINDRFGHGCGDAVIIAVSAMLTSAFDEMSVVARLGGEEFGVIVSGEPLEAR 188

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
                 +R  I    I  + G  I IT+S G+A+         +   AD+ALY+AK  GR
Sbjct: 189 MERVEGVRARIAGGAIK-AEGHDIRITVSGGVADLVAGRNKQAVYASADRALYLAKALGR 247

Query: 253 NRVV 256
           NRVV
Sbjct: 248 NRVV 251


>gi|218673892|ref|ZP_03523561.1| probable urease-associated protein [Rhizobium etli GR56]
          Length = 283

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/184 (38%), Positives = 95/184 (51%), Gaps = 1/184 (0%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIV 132
           ++  T+  +L   +G  + EL +S     +LSR D LSGLLN  AF  +L       S+V
Sbjct: 65  LVGGTVCGMLSLTAGFTMHELTVSRAEFEKLSRTDTLSGLLNRRAFTEALDKTEGNASLV 124

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            FD+D FK IND FGH  GD VI  +S  L+  F     + RLGGEEF     G   +  
Sbjct: 125 IFDVDRFKAINDRFGHACGDAVITAVSAMLISAFDEMSVIARLGGEEFGVIVSGEPLEAR 184

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
                ++R  I +  I  + G  I IT+S G+A+         +   AD+ALY+AK  GR
Sbjct: 185 MERIEEVRARIASGAI-AAEGHDIRITVSGGVADLAAGRSKQAVYASADRALYLAKALGR 243

Query: 253 NRVV 256
           NRVV
Sbjct: 244 NRVV 247


>gi|91774395|ref|YP_544151.1| diguanylate cyclase [Methylobacillus flagellatus KT]
 gi|91708382|gb|ABE48310.1| diguanylate cyclase (GGDEF domain) [Methylobacillus flagellatus KT]
          Length = 521

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/182 (40%), Positives = 102/182 (56%), Gaps = 10/182 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE---KLSIVFFDIDYFKQIND 144
           EL +  +RI++++  D L+G LN      A +  L   +     LSI   DID+FKQIND
Sbjct: 340 ELTLQLDRINEIAHEDYLTGTLNRRGMDEALVRELNRADRFGMPLSIAMMDIDHFKQIND 399

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKII 203
           N GH  GD+ +A L+  +     T   + R GGEEF     G++EQ+A +++    R++ 
Sbjct: 400 NLGHATGDQALAHLASVIKESLRTTDVIARYGGEEFIILLPGTAEQDAISVIMRAQREL- 458

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
              +I + +   I IT SAG+AER   EP   II R DQALY AK SGRNRVV  S ++ 
Sbjct: 459 -TRKIFLHNDSHILITFSAGVAERKAGEPADAIIGRTDQALYRAKNSGRNRVVGASMLDQ 517

Query: 264 NT 265
            T
Sbjct: 518 AT 519


>gi|222086805|ref|YP_002545339.1| urease-associated protein [Agrobacterium radiobacter K84]
 gi|221724253|gb|ACM27409.1| urease-associated protein [Agrobacterium radiobacter K84]
          Length = 285

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/259 (34%), Positives = 126/259 (48%), Gaps = 7/259 (2%)

Query: 12  WLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLF-----YIGLTPFYGLEYILV 66
           W+  +  L  F     + +F++  S   A V+ +A I L      + GL P   L+ + +
Sbjct: 4   WISLQAELGDFQCRRTIYFFALKMSC-AAIVLSVAIILLMLPAVQWFGLLPLPMLDAVRL 62

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN 126
             L    I   +S  L  ++G  + +L +S     +LSR D LSGLLN  AF  +L    
Sbjct: 63  CILLASFIGGIVSAALALLAGHAIHKLALSNAEFERLSRTDMLSGLLNRRAFTEALDRVE 122

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
              S+V FD+D FK IND +GH  GD VI  +S     +FG    V RLGGEEF A   G
Sbjct: 123 ADASLVIFDVDRFKTINDRYGHASGDAVIIAVSQIFSSIFGGRDVVARLGGEEFGAIVHG 182

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
               E      D++ +I    I +  G ++ ITISAGIA+             AD+ALY+
Sbjct: 183 HDMAERIARIEDVKALIAEHAIAVEGG-AVTITISAGIADIWGPRRKEAAYAAADKALYL 241

Query: 247 AKKSGRNRVVCFSDIENNT 265
           AK  GRNR+V  S+  N  
Sbjct: 242 AKALGRNRIVHESEWMNQA 260


>gi|283779436|ref|YP_003370191.1| response regulator receiver modulated diguanylate cyclase
           [Pirellula staleyi DSM 6068]
 gi|283437889|gb|ADB16331.1| response regulator receiver modulated diguanylate cyclase
           [Pirellula staleyi DSM 6068]
          Length = 569

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/177 (40%), Positives = 100/177 (56%), Gaps = 11/177 (6%)

Query: 98  NRISQLSRIDCLSGLLN----HSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPV 150
            R+S L+R D ++GLL     H   +   G        LS V FD D+FK+IND +GHPV
Sbjct: 130 KRLSLLARTDPMTGLLTKKVFHEMLVKEWGRSTRHHFPLSCVMFDCDFFKRINDTYGHPV 189

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+VI  +   L         + R GGEEFA     ++E  AAI A  +RK++   +I +
Sbjct: 190 GDEVIRRIGRTLSSNCRGSDVIARFGGEEFAVLLPETTESNAAIWAERIRKLVAADRIMV 249

Query: 211 SSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             G  + ITIS G+A+R   + +P   ++  ADQAL VAK+SGR+R+V FS +  NT
Sbjct: 250 -DGKELAITISGGVAQRMVDNAQP-DQLVDMADQALLVAKRSGRDRIVTFSSMLGNT 304


>gi|92113067|ref|YP_572995.1| diguanylate cyclase with PAS/PAC sensor [Chromohalobacter
           salexigens DSM 3043]
 gi|91796157|gb|ABE58296.1| diguanylate cyclase with PAS/PAC sensor [Chromohalobacter
           salexigens DSM 3043]
          Length = 438

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 97/164 (59%), Gaps = 8/164 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +LS  D L+G LN  A++S L S         +++S+V FDID+FK IND +GH  G
Sbjct: 268 RLQELSTTDSLTGALNRGAYLSCLRSGLEAADHVAQRMSLVIFDIDHFKTINDTWGHAAG 327

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+A + +            GR+GGEEF+    G S  +AA+LA  LRK  E+ ++   
Sbjct: 328 DLVLACVGEICRTALRDQDVFGRIGGEEFSLMLAGQSLNDAALLAERLRKKFESVRVEFH 387

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G  +  ++S G+AER   E + ++++RAD  LY AK++GRNRV
Sbjct: 388 -GEWLSFSVSFGVAERQTSEGVESLLHRADMGLYAAKRNGRNRV 430


>gi|116253470|ref|YP_769308.1| transmembrane GGDEF sensory box protein [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115258118|emb|CAK09219.1| putative transmembrane GGDEF sensory box protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 287

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/244 (34%), Positives = 116/244 (47%), Gaps = 6/244 (2%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV 72
           L + KN+     + F +  +    I    +I +    L  +GL P      I    +   
Sbjct: 14  LQYRKNV-----YVFALKMAFLAVILSGVIIALTMPSLDLLGLLPVTLAHAIGFSAIFSW 68

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIV 132
           +I  T+S +L   +G  +++L +S     +LSR D LSGLLN  AF  +L + +   S+V
Sbjct: 69  LIGGTVSGMLSLFAGFAMRDLALSRAEFEKLSRTDTLSGLLNRRAFTEALENTDGNASLV 128

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            FD+D FK IND FGH  GD VI  +S  L   F     V RLGGEEF     G   +  
Sbjct: 129 IFDVDRFKAINDRFGHGCGDAVIVAVSAMLTSAFDEMSVVARLGGEEFGVILSGEPLEAR 188

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
                 +R  I    I  + G  I IT+S G+A+         +   AD+ALY+AK  GR
Sbjct: 189 MERIEGVRARIACGAIK-AEGHDIRITVSGGVADLVAGRNKQAVYASADRALYLAKALGR 247

Query: 253 NRVV 256
           NRVV
Sbjct: 248 NRVV 251


>gi|86358902|ref|YP_470794.1| urease-associated protein [Rhizobium etli CFN 42]
 gi|86283004|gb|ABC92067.1| probable urease-associated protein [Rhizobium etli CFN 42]
          Length = 283

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/232 (35%), Positives = 111/232 (47%), Gaps = 1/232 (0%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           + F +  S    IF   +I +    L ++GL P      I    +   +I  T+S +L  
Sbjct: 17  YVFALKMSFLAVIFSGVIIALTIPPLGFLGLLPVTLSHAISFGAIFSWLIGGTVSGMLSL 76

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQIND 144
            +G  + EL +S     +LSR D LSGLLN  AF  +L       S+V FD+D FK IND
Sbjct: 77  ATGFTMHELMLSRAEFEKLSRTDTLSGLLNRRAFTEALDRTEGDASLVIFDVDRFKAIND 136

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD VI  +S  L+  F     V RLGGEEF     G   +        +R  I 
Sbjct: 137 RFGHACGDAVITAVSAVLLSAFDELSVVARLGGEEFGVIVSGEPLEARLERIEAVRASIA 196

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              I ++    I ITIS G+A+         +   AD+ALY+AK  GRNRVV
Sbjct: 197 GRPI-VAEDCQIAITISGGVADLIAGRNKQQVYASADRALYLAKALGRNRVV 247


>gi|209550625|ref|YP_002282542.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209536381|gb|ACI56316.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 287

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/257 (33%), Positives = 120/257 (46%), Gaps = 21/257 (8%)

Query: 12  WLCHEKNLESFSPHTFMIYFSI---FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           W+  + +  +F     +  F++   F ++ ++ VI    I        P  G   +L E 
Sbjct: 4   WMSLQADFGNFQYRGNVYVFALKMSFLTVLLSGVIMAVTI--------PPLGFLGLLPET 55

Query: 69  LSLVI---------ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           LS  I         +  T+S +L   +G  L EL +S     +LSR D LSGLLN  AF 
Sbjct: 56  LSHAIGFGVIFSWLVGGTVSGMLSLAAGFALHELTLSRAEFEKLSRTDTLSGLLNRRAFT 115

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
            +L +     S+V FD+D FK IND FGH  GD VI  +S  L+  F     V RLGGEE
Sbjct: 116 EALENTEGDASLVIFDVDRFKAINDRFGHGCGDAVITAVSAMLISAFDEMSVVARLGGEE 175

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F     G    EA +   +  +         + G  I IT+S G+A+         +   
Sbjct: 176 FGVIISGEP-LEARMERIEGVRARIAGGAIAAEGHDIRITVSGGVADLAAGRNKQAVYAS 234

Query: 240 ADQALYVAKKSGRNRVV 256
           AD+ALY+AK  GRNRVV
Sbjct: 235 ADRALYLAKALGRNRVV 251


>gi|87120950|ref|ZP_01076842.1| PAS:GGDEF protein [Marinomonas sp. MED121]
 gi|86163788|gb|EAQ65061.1| PAS:GGDEF protein [Marinomonas sp. MED121]
          Length = 386

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/229 (35%), Positives = 132/229 (57%), Gaps = 15/229 (6%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI 100
           T+I I+  F  Y+ +     +E IL   L  ++++ TI+++L  + G +    F  Y  I
Sbjct: 161 TIILISEAFRLYLLIDK---IEPILA--LGFLVVAHTIAIILNSV-GIMTAFSFAHYKAI 214

Query: 101 SQLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
             LS+ D L+GLLN   F S   +  +  ++++++  DIDYFK INDN GH  GD+V+  
Sbjct: 215 RNLSKQDSLTGLLNRRGFFSLYQNKSTRYKEVAVISCDIDYFKTINDNHGHIYGDQVLEK 274

Query: 158 LSDQL----VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++ QL       F     V R GGEEF  A   SS  +A ++AN LR+ I ++Q  I +G
Sbjct: 275 IALQLKQHTKAHFSKESLVARWGGEEFVIALFDSSINQANLIANALRESIYHNQYQI-NG 333

Query: 214 PSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            + ++++S G+A +  ++  I  II ++DQALY AK +GRN+V C S++
Sbjct: 334 QNFNLSLSFGVAHQAIEDVEIEDIINQSDQALYHAKSNGRNQVSCHSEL 382


>gi|261855750|ref|YP_003263033.1| response regulator receiver modulated diguanylate cyclase
           [Halothiobacillus neapolitanus c2]
 gi|261836219|gb|ACX95986.1| response regulator receiver modulated diguanylate cyclase
           [Halothiobacillus neapolitanus c2]
          Length = 547

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 91/170 (53%), Gaps = 7/170 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           + Y +     R D L+GLLNH+A        I      N+ LS+V  DID+FK +ND FG
Sbjct: 365 LRYRQSMAEKRSDSLTGLLNHNAIKDLVEAEIDRANRQNQPLSVVLIDIDHFKNVNDTFG 424

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD VI  LS+ L         VGR GGEEF      + EQ AA L N LR     S 
Sbjct: 425 HQAGDIVIRKLSNLLNTRLRRYDGVGRYGGEEFMITLPNTDEQTAAHLINRLRVQFGQSA 484

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I   +G ++  T SAGIA       ++++I  ADQ LYVAK +GRNRVVC
Sbjct: 485 IRTENGSNMLCTFSAGIASFPRFLDLTSLIEAADQHLYVAKANGRNRVVC 534


>gi|307823061|ref|ZP_07653291.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
 gi|307735836|gb|EFO06683.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
          Length = 512

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/155 (42%), Positives = 89/155 (57%), Gaps = 8/155 (5%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N +A+   L +       Y+  LS++ +DID+FK IND++GH  GDKV+  ++
Sbjct: 355 DTLTGLPNRNAYNERLETELARWKRYHSPLSLIIWDIDHFKNINDSYGHKAGDKVLLLIA 414

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            QL        F+ R GGEEF      +  + A ILA  LR+ IE +  N +SG S+ IT
Sbjct: 415 KQLSDHSRATDFISRFGGEEFTMLLPNTDSKSALILATQLRQTIEKTGFN-ASGASVAIT 473

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           IS GI E    +   T   RADQALY AK+ GRNR
Sbjct: 474 ISCGITEFTDNDTDETAFDRADQALYQAKEQGRNR 508


>gi|269926824|ref|YP_003323447.1| diguanylate cyclase with GAF sensor [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790484|gb|ACZ42625.1| diguanylate cyclase with GAF sensor [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 563

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/176 (37%), Positives = 97/176 (55%), Gaps = 8/176 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHP 149
           Y ++S+ +  D LSG LNH AF+  +    E+       LSI+FFD+D+FKQ+ND FGH 
Sbjct: 379 YRQLSEKASRDPLSGFLNHRAFVERVAEEIERSRRLYTGLSILFFDLDHFKQVNDTFGHE 438

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VG+KV+  +S        +   +GR GGEEF A   G+S  ++   A  LR  I   Q+ 
Sbjct: 439 VGNKVLKEMSRVARQTLRSIDVLGRFGGEEFEAILPGASIDDSKAAAERLRSAISGHQVV 498

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +  G +I + +S G A           +I  AD ALY AK+ GRN+VV ++D+  +
Sbjct: 499 LEDGRTITLQVSVGAATYPFDGATPEELIRNADAALYEAKRRGRNKVVHYADMRQD 554


>gi|320160324|ref|YP_004173548.1| hypothetical protein ANT_09140 [Anaerolinea thermophila UNI-1]
 gi|319994177|dbj|BAJ62948.1| hypothetical protein ANT_09140 [Anaerolinea thermophila UNI-1]
          Length = 217

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 98/172 (56%), Gaps = 9/172 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           ++ + QL+ +D L+G+LN            S    ++  LS++  D+D+FK+IND FGH 
Sbjct: 45  FSEVQQLATLDDLTGILNRRQLFIEGKREFSRAKRHHRPLSLLMIDLDHFKEINDTFGHA 104

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+ + FL+  +          GR GGEEF      + +QEAA +A  LRK+IE S ++
Sbjct: 105 VGDEALKFLAHIIRKTIREVDIFGRYGGEEFVLVLPETPKQEAAGIAERLRKLIEQSPVS 164

Query: 210 ISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              G  + IT+S G+AE+    +    +I  ADQALY AK+SGRNRV  + +
Sbjct: 165 TPEG-ELRITVSVGVAEQHELTQTFEDLIGYADQALYHAKQSGRNRVEMYDE 215


>gi|222054413|ref|YP_002536775.1| diguanylate cyclase [Geobacter sp. FRC-32]
 gi|221563702|gb|ACM19674.1| diguanylate cyclase [Geobacter sp. FRC-32]
          Length = 417

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 77/212 (36%), Positives = 116/212 (54%), Gaps = 18/212 (8%)

Query: 62  EYILVENLSLVIISITISLLLGYISG-------SILKELFISYNRISQLSRIDCLSGLLN 114
           E +   +LS ++I +   L++G + G        ++  L  +  R+ +L+  D L+GL N
Sbjct: 208 ELVRQTHLSQLLIVLAAILIIGLVVGITYFLTWRLVINLDEAQQRLKRLASTDELTGLRN 267

Query: 115 HSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
               +  L           E L I+  D+D FK+IND +GHP GD V+ ++++++  V  
Sbjct: 268 RRHIMGRLEEEFERSNRLGEPLCIIMLDLDLFKKINDTWGHPFGDHVLKWVANRMNEVVR 327

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
               VGR+GGEEF   +  ++  EA +LA  LR+ IE   IN   G  I +TISAGIA  
Sbjct: 328 AYDVVGRIGGEEFLIISPSTTLGEAVVLAERLRETIEQETIN-HGGTVIPLTISAGIA-L 385

Query: 228 CHKEPIST--IIYRADQALYVAKKSGRNRVVC 257
             K  I++  +I RAD ALY AK++GRNRVV 
Sbjct: 386 MGKADINSDDLIRRADAALYRAKQAGRNRVVV 417


>gi|146339674|ref|YP_001204722.1| hypothetical protein BRADO2669 [Bradyrhizobium sp. ORS278]
 gi|146192480|emb|CAL76485.1| Conserved hypothetical protein; putative membrane protein; Putative
           diguanylate cyclase (GGDEF domain) [Bradyrhizobium sp.
           ORS278]
          Length = 382

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 100/182 (54%), Gaps = 15/182 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
           Y+ G  LKE   +Y RI +L+ +D L+G LN  + +  L              SIV  D+
Sbjct: 205 YLRGQKLKE---AYRRIEELAELDELTGALNRRSIMQVLDEEMARCRQAGRPCSIVLIDL 261

Query: 137 DYFKQINDNFGHPVGDKVI-AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           D+FK+IND  GHP GD V+  F       + G+  F GR GGEEF     G+  + AA L
Sbjct: 262 DWFKRINDTHGHPTGDDVLRTFAITMYANIRGSDRF-GRYGGEEFLLVLPGAPAEPAARL 320

Query: 196 ANDLRKIIENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  LR+II  ++++ S+    + +T SAG+A R   E   +++ RAD ALY +K +GRNR
Sbjct: 321 AERLRRII--AELDWSAFSAGLQVTFSAGVATRRGDETAESLLARADHALYDSKANGRNR 378

Query: 255 VV 256
           V 
Sbjct: 379 VT 380


>gi|192290414|ref|YP_001991019.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
 gi|192284163|gb|ACF00544.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
          Length = 381

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 99/181 (54%), Gaps = 11/181 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
           Y  G  L+E   +Y RI +L+ +D L+G  N    +  L         + E LS+   D+
Sbjct: 204 YKRGVQLRE---AYQRIEELAELDELTGAYNRRCIMRHLDNEIERAARHCESLSLALIDL 260

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND FGHP+GD+V+   +  +     +    GR GGEEF      +S+ EA ++ 
Sbjct: 261 DWFKRINDTFGHPIGDEVLRTFAITIFANIRSFDRFGRYGGEEFLLLLPNTSDDEARLIL 320

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + LR I+ +   +  S PS+ +T+SAG+     +E    ++ RAD+ALY AK  GRNR+ 
Sbjct: 321 DRLRMIVADLDWSAFS-PSMMVTLSAGVTTMTLQESTEAVLARADRALYEAKHGGRNRIS 379

Query: 257 C 257
           C
Sbjct: 380 C 380


>gi|227327435|ref|ZP_03831459.1| putative signaling membrane protein [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 495

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/185 (37%), Positives = 98/185 (52%), Gaps = 16/185 (8%)

Query: 94  FISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS------YNEK--LSIVFFDIDYFK 140
           F+S NR     I   SR D L+   N  AF+S L        Y +K  L+++F DIDYFK
Sbjct: 311 FVSMNRRLIKIIESGSRKDALTNTFNRRAFLSMLNGKQSAPGYKKKRQLTLLFLDIDYFK 370

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND +GH  GD++IA  +  L         + R GGEEF  AA   + +++  +A  LR
Sbjct: 371 QVNDTYGHACGDELIASFARMLSTTIRPSDILCRWGGEEFVIAAYDLTAEQSEAMAEALR 430

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCF 258
            + E++ + +S G  IH T S G+A     E   I  +I  AD+ LY AK  GRNR VC 
Sbjct: 431 HLTESTALTLSDGREIHFTTSIGVAVFAQYEGGNIYDLIGLADEQLYKAKAQGRNR-VCM 489

Query: 259 SDIEN 263
             +E+
Sbjct: 490 RLVED 494


>gi|299133471|ref|ZP_07026665.1| diguanylate cyclase [Afipia sp. 1NLS2]
 gi|298591307|gb|EFI51508.1| diguanylate cyclase [Afipia sp. 1NLS2]
          Length = 379

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/187 (37%), Positives = 97/187 (51%), Gaps = 27/187 (14%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136
           Y  G  LKE   +Y RI +L+  D L+G  N  + + +L   +E+        SI   D+
Sbjct: 202 YTQGLALKE---AYRRIEELAEFDELTGAHNRRSIMHALVEESERAIRTKSPCSIALIDL 258

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV--------GRLGGEEFAAAALGSS 188
           D+FK+IND +GHPVGD+V+          F   MF         GR GGEEF      ++
Sbjct: 259 DFFKKINDLYGHPVGDEVLR--------TFAITMFANVRAIDKFGRYGGEEFLLIMPETA 310

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           E  A  +A+ LR II +   N S  P I +T+SAG+A   H E    ++ RAD ALY AK
Sbjct: 311 EDTAEKVADRLRMIIADIDWN-SISPGIAVTMSAGVATLRHDEAPENLLLRADMALYRAK 369

Query: 249 KSGRNRV 255
             GRNR+
Sbjct: 370 DRGRNRI 376


>gi|83644506|ref|YP_432941.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83632549|gb|ABC28516.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 303

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 106/206 (51%), Gaps = 24/206 (11%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--- 122
           V+N+ L+I  +T          S  ++L  + +++ +LSRID L+ L N   +   L   
Sbjct: 109 VQNICLIIYDVTDI-------ASNRRQLEAANSKLEKLSRIDRLTQLNNRGYWEEQLVKE 161

Query: 123 ----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                  NE  +++ FDID+FK++ND +GHP GD+VI  +S  L     +    GR GGE
Sbjct: 162 YQRVKRTNEASTLIMFDIDHFKKVNDTYGHPAGDEVIRVVSAALRDTMRSTDIAGRYGGE 221

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPI 233
           EF+   + +  + A   A  LR  IEN ++    G  I  TIS G+AE     + HKE I
Sbjct: 222 EFSVILVNTDGKNAMNFAERLRTRIENLEV-THEGRDIRFTISLGLAELDKKIKDHKEWI 280

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
                RAD ALY +K+ GRNR   + 
Sbjct: 281 E----RADTALYASKQGGRNRATTYE 302


>gi|327399618|ref|YP_004340487.1| diguanylate cyclase [Hippea maritima DSM 10411]
 gi|327182247|gb|AEA34428.1| diguanylate cyclase [Hippea maritima DSM 10411]
          Length = 462

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 100/175 (57%), Gaps = 14/175 (8%)

Query: 97  YNRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           Y +  Q++  D L+GL N           +  SL +  + L ++ FD+D+FK+IND +GH
Sbjct: 285 YEKTQQMAAYDELTGLYNRRFGMIRLKEEYKRSLRT-EQCLCLIMFDVDHFKKINDTYGH 343

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD +++ +S  L   F T   V R GGEEF  A   S ++ A   A ++RKII+ +Q 
Sbjct: 344 QAGDYILSSVSKILKSNFRTEDVVLRYGGEEFLCAMSNSDKENAVKKAEEIRKIIQETQF 403

Query: 209 NISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                P I ITISAG++    +   ++ I  +I  AD+ALY+AK+SGRN++V F+
Sbjct: 404 KWRDVP-IKITISAGVSRIDIKNGEQKSIEQLIKEADEALYIAKRSGRNKIVTFN 457


>gi|39934887|ref|NP_947163.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009]
 gi|39648737|emb|CAE27259.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris
           CGA009]
          Length = 429

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 99/181 (54%), Gaps = 11/181 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
           Y  G  L+E   +Y RI +L+ +D L+G  N    +  L         + E LS+   D+
Sbjct: 252 YKRGVQLRE---AYQRIEELAELDELTGAYNRRCIMRHLDNEIERAARHCESLSLALIDL 308

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND FGHP+GD+V+   +  +     +    GR GGEEF      +S+ EA ++ 
Sbjct: 309 DWFKRINDTFGHPIGDEVLRTFAITIFANIRSFDRFGRYGGEEFLLLLPNTSDDEARLIL 368

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + LR I+ +   +  S PS+ +T+SAG+     +E    ++ RAD+ALY AK  GRNR+ 
Sbjct: 369 DRLRMIVADLDWSAFS-PSMMVTLSAGVTTMTLQESTEAVLARADRALYEAKHGGRNRIS 427

Query: 257 C 257
           C
Sbjct: 428 C 428


>gi|296533653|ref|ZP_06896211.1| GGDEF domain protein [Roseomonas cervicalis ATCC 49957]
 gi|296266022|gb|EFH12089.1| GGDEF domain protein [Roseomonas cervicalis ATCC 49957]
          Length = 262

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 123/235 (52%), Gaps = 16/235 (6%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS-LLLGYISGSILKELF 94
           ++ +A  + +A   LF      F      L      ++I+  I  LLLG+I  + L  L+
Sbjct: 30  AVLLALAVDVAQQLLF------FTDWPTALRSWAVTIVIATGIGVLLLGWIGRAHLA-LY 82

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-SIVFFDIDYFKQINDNFGHPVGDK 153
            +  +  +LSR D L+GL N  A + +    +  L ++V  D+D+FK++ND  GH VGD 
Sbjct: 83  EAKQQAERLSRTDPLTGLANRRALLEAAERGDLALMALVIIDLDHFKRVNDTHGHRVGDA 142

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN--DLRKIIENSQINIS 211
           V+  +S  L    G    + RLGGEEFA  A G  E  AA+LA    LR  + +  + ++
Sbjct: 143 VLQAVSGILAAELGEEGVLARLGGEEFALLAPG--EAPAALLARLVRLRDRLADQPV-VA 199

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            G ++ +TISAG+A R        +   AD+ALY AK+ GRNR +C S+   + C
Sbjct: 200 EGRAVSVTISAGVALR-QAGSFDALYGEADRALYAAKQGGRNR-ICLSEPLRHLC 252


>gi|88800521|ref|ZP_01116084.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Reinekea sp. MED297]
 gi|88776752|gb|EAR07964.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Reinekea sp. MED297]
          Length = 318

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/199 (35%), Positives = 111/199 (55%), Gaps = 20/199 (10%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS- 124
           V+NL++++  +T       I+ S L EL  + +R++QLSR D L+ L N + +   L + 
Sbjct: 125 VQNLAVIVYDVTD------IATSKL-ELKAANDRLAQLSRTDGLTQLYNRAYWEEMLSNE 177

Query: 125 ------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                 +   LS++ FDID+FK++ND +GH VGD VI  +++++          GR GGE
Sbjct: 178 FKRQKRHAHDLSLIMFDIDHFKKVNDTYGHQVGDDVIRAVAEEVRHNSRNTDIAGRYGGE 237

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPIST 235
           EFA   + S  + A + A  LRK IEN +++   G  + +T+S G+A   E  H    + 
Sbjct: 238 EFALLLIDSDAENALLFAERLRKAIENRRVSTPEG-ELQVTVSLGVAPWKESFHH--YNA 294

Query: 236 IIYRADQALYVAKKSGRNR 254
            I  AD+ALY +K  GRNR
Sbjct: 295 WIEAADKALYTSKDEGRNR 313


>gi|114321226|ref|YP_742909.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227620|gb|ABI57419.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 382

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 8/176 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           S+  +L +      Q +R D L+GL N  A    +     +       L+++ FD+D FK
Sbjct: 200 SVAGQLLMLLRLYRQATR-DPLTGLFNRRALTEQIERERARFLRTGRPLTVLLFDLDRFK 258

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND+ GH VGD+V+   ++ +     T    GR GGEEF AA   ++ ++A ++A  +R
Sbjct: 259 RINDHHGHLVGDRVLQVFANVVQQNLRTTDHFGRWGGEEFLAALPETTSEQARVVAERVR 318

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  EN ++ ++ GPS+  T S G+A     E + ++  R D+ALY AK  GRNRVV
Sbjct: 319 QACENERLTLAEGPSLGFTTSIGVATLHRDETLDSLFNRVDEALYNAKAYGRNRVV 374


>gi|220932075|ref|YP_002508983.1| diguanylate cyclase [Halothermothrix orenii H 168]
 gi|219993385|gb|ACL69988.1| diguanylate cyclase [Halothermothrix orenii H 168]
          Length = 499

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 94/166 (56%), Gaps = 5/166 (3%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           Y +  +++  D L+GL NH+ F + L           L+++  DID FKQ+ND FGH VG
Sbjct: 333 YKKQEEMANRDGLTGLYNHAYFQNRLHLLLKQENKHPLTLIIMDIDNFKQVNDRFGHLVG 392

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DKV+  L+  L         + R GGEEFA     +  ++   +A  LRK+I +++I + 
Sbjct: 393 DKVLKELAHLLKHNLREGDLIARYGGEEFAIILPETELKQGEFIAKRLRKLISDNEIVLD 452

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  S++IT+S G+A+   K      I +ADQALY AK++G+NRV  
Sbjct: 453 NNRSLYITVSIGVAQYNKKWSQEEFIDKADQALYKAKEAGKNRVTL 498


>gi|172056342|ref|YP_001812802.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15]
 gi|171988863|gb|ACB59785.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15]
          Length = 361

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 115/224 (51%), Gaps = 12/224 (5%)

Query: 49  FLFYIGLTPFYGLE--YILVEN----LSLVIISITISLLLGYISGSILKELFISYNRIS- 101
           +L  IG+   Y L   Y+L E     L + ++ I   LL GY++ S L+EL   +  +  
Sbjct: 137 YLVLIGIGIGYSLPALYLLTETFNRFLEIALVYIIFILLGGYVTYSFLQELRKHFQFVQT 196

Query: 102 --QLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
             +L+  D L+ L N      +L SY++     S++  DID+FK +ND +GH  GD V+ 
Sbjct: 197 QQELALTDGLTNLANRRKLDETLASYDKYGFAFSVLIVDIDFFKSVNDTYGHDGGDVVLR 256

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            LS  L         VGR GGEEF      +  ++A  L   +R    +     S+ P+ 
Sbjct: 257 QLSHLLEHCCPDQALVGRYGGEEFVVLLPDTPLKDAVRLGETIRLACADQHFVFSTYPAF 316

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           H+T+S G A     E    +I +ADQ+LY AK++GRN+VV +S+
Sbjct: 317 HVTLSIGAASSDQGETSFEVIQKADQSLYQAKQTGRNKVVAYSE 360


>gi|71280812|ref|YP_270895.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71146552|gb|AAZ27025.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 477

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/193 (36%), Positives = 108/193 (55%), Gaps = 11/193 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------- 124
           V++S  I+LL+ +I    ++++ +   ++ +L+  D L+ L N  +F   L         
Sbjct: 288 VLLSTVITLLISFIIVLYVRKIHL---KLDKLASNDDLTNLPNRRSFHDELAKQLLLKER 344

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           YN +LS++F DID FK++ND  GH VGDKV+  L++ L        FV R GGEEF    
Sbjct: 345 YNSELSLLFIDIDNFKKVNDTKGHDVGDKVLKSLANVLNGNVRKSDFVARWGGEEFIILL 404

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
           +GS   +A ++A  LR  I NS+ ++S      +TIS G     +++ I TI+ RAD AL
Sbjct: 405 IGSDINQAQVIAEQLRSQIANSK-HLSQYAQQQVTISLGATSVTNEDNIDTILKRADLAL 463

Query: 245 YVAKKSGRNRVVC 257
           Y AK  G+N VV 
Sbjct: 464 YKAKSKGKNCVVS 476


>gi|225849660|ref|YP_002729894.1| signal transduction response regulator [Persephonella marina EX-H1]
 gi|225644826|gb|ACO03012.1| signal transduction response regulator [Persephonella marina EX-H1]
          Length = 509

 Score =  111 bits (278), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 86/252 (34%), Positives = 124/252 (49%), Gaps = 27/252 (10%)

Query: 18  NLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLE--YILVEN---LSLV 72
           NLE F P +  +   I    +IA+ I I+N    YIG   +Y  +  Y + +N   +S V
Sbjct: 258 NLEDFKPKSIAV--DINGDYYIASFIPISNKKEKYIGYLVYYEKDNTYGVFKNTFIISYV 315

Query: 73  IISITISLLL--GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLG 123
            I++ + LLL   +I G ++KE      R   ++ ID L+G+ N   F       +    
Sbjct: 316 GINLLVGLLLTMSFILG-VIKE------RFKAMAEIDTLTGIYNKGKFNHLLQVELDRSK 368

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            Y   LS++ FDID+FK+IND FGH  GD V+  L+  +     +  F  R GGEEF   
Sbjct: 369 RYGRPLSLIIFDIDHFKKINDAFGHQAGDYVLKTLAKIVSSNIRSTDFFARWGGEEFVIL 428

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
           A  +  + A ILA  +RK IE             +T S G+ E    + + + + RAD A
Sbjct: 429 APETDLEGAQILAEKIRKAIEEYPFETVG----KVTSSFGVTEAFENDTVDSFVKRADVA 484

Query: 244 LYVAKKSGRNRV 255
           LY AK  GRNRV
Sbjct: 485 LYKAKDKGRNRV 496


>gi|262376373|ref|ZP_06069602.1| predicted protein [Acinetobacter lwoffii SH145]
 gi|262308512|gb|EEY89646.1| predicted protein [Acinetobacter lwoffii SH145]
          Length = 476

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 126/250 (50%), Gaps = 18/250 (7%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           P   +I+ ++ + +F  T+I      L Y  LT FY   +  + + S + IS+ I L + 
Sbjct: 231 PLAALIWAALTYRLFSMTLINAFVTILTYYSLTRFYATTHDTLAD-STIYISLRIGLFML 289

Query: 84  YISGSIL-------KELFISYNRISQLSRIDCLSGLLNHSAFISS---LGSYNEKL--SI 131
            +S  IL        ELF    R+  L+  D L+  +N   F      L  Y  ++  S+
Sbjct: 290 ALSPLILCIISQNRNELF---KRVLYLANHDSLTRTMNRHFFFQKGEYLLQYANRMEFSV 346

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK++ND+FGH VGDKV+   ++ +           R+GGEEF      +   E
Sbjct: 347 IMLDIDHFKRLNDDFGHHVGDKVLQHFAEIIRCNLRAEDLFARIGGEEFVLLLWNTEPSE 406

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKK 249
           A ++A  +R ++E + I  S G  ++IT+S GI  +     + +  +I  ADQALY AK 
Sbjct: 407 ARLIAERIRDLVEKTPIYQSDGSPLYITVSVGITHQNEPQAQDLQNLINIADQALYQAKH 466

Query: 250 SGRNRVVCFS 259
            GRN+VV  S
Sbjct: 467 RGRNQVVLAS 476


>gi|71908438|ref|YP_286025.1| PAS:GGDEF [Dechloromonas aromatica RCB]
 gi|71848059|gb|AAZ47555.1| PAS:GGDEF protein [Dechloromonas aromatica RCB]
          Length = 548

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 95/166 (57%), Gaps = 8/166 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +LS+ D L+ L N   F S           Y  KLS++  DID+FK+IND  GH  GD
Sbjct: 376 LERLSQFDELTNLFNRRHFFSLAKHELNRSSRYRSKLSVMMLDIDHFKRINDGHGHKTGD 435

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+A +  Q+          GR+GGEEFA     +  ++A+I+A  LRK +  + ++I  
Sbjct: 436 LVLANIGKQIGDSLRDSDIAGRMGGEEFAILLPETDLEQASIMAERLRKQVAETWLDIGD 495

Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           G +++ T+S G+A +  ++  +  ++++AD ALY AK SGRN+V C
Sbjct: 496 GRTLNCTLSIGLATKSDQQIDLENLLHQADTALYAAKNSGRNKVSC 541


>gi|288573613|ref|ZP_06391970.1| diguanylate cyclase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569354|gb|EFC90911.1| diguanylate cyclase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 481

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 99/187 (52%), Gaps = 6/187 (3%)

Query: 74  ISITISLLLGYISGSILKELFISY-NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--- 129
           I+I +  L+  +  S++  +  +Y  R+ +L+ +D L+G+ N  AF  +     EK    
Sbjct: 293 INILVGGLITLVVTSLVALIVRNYERRVERLASVDELTGMWNRRAFDLAFAHLLEKFEGQ 352

Query: 130 -SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            S+   DID+FK +ND +GH +GD+V+  + D +    G     GR GGEEF     G  
Sbjct: 353 CSVTMMDIDHFKHVNDTYGHLMGDRVLGHVCDVVTKAIGPDDVCGRWGGEEFIVLLKGRK 412

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           + +A   A  +R+ +E S         + IT+S G+AE    E   T I RADQALY AK
Sbjct: 413 KGDAVKTAEKIRRAVEASPYE-DGDVVLPITVSLGVAEHHPGESRETTIARADQALYRAK 471

Query: 249 KSGRNRV 255
           +SGRNR 
Sbjct: 472 ESGRNRT 478


>gi|148262461|ref|YP_001229167.1| diguanylate cyclase [Geobacter uraniireducens Rf4]
 gi|146395961|gb|ABQ24594.1| diguanylate cyclase [Geobacter uraniireducens Rf4]
          Length = 422

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 110/204 (53%), Gaps = 13/204 (6%)

Query: 66  VENLSLVIISI-TISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
            + L +V  +I TI LLLG   +++  ++  L ++   + +L+  D L+GL N    +  
Sbjct: 219 TDKLMIVAATIGTIGLLLGITYFLTWRLVLNLDMAQKHLKRLASTDELTGLKNRRQIMKR 278

Query: 122 LGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L           E L ++  D+D+FK+IND +GHP GD V+  ++  +         +GR
Sbjct: 279 LDEEYQRAIRLGEPLCLIMLDLDHFKKINDTYGHPFGDLVLKCVAGHMKKALRRYDVLGR 338

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPI 233
           +GGEEF   + G++ +EA +LA  LR  +E  +I       + IT+S G+A      + +
Sbjct: 339 IGGEEFLIVSPGTTREEAVVLAQRLRSTVEMEKIAYED-KKVTITVSCGVAFLYKGDDNV 397

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
             ++ RAD ALY+AK+ GRNRVV 
Sbjct: 398 EILLKRADSALYIAKQEGRNRVVA 421


>gi|253997135|ref|YP_003049199.1| diguanylate cyclase [Methylotenera mobilis JLW8]
 gi|253983814|gb|ACT48672.1| diguanylate cyclase [Methylotenera mobilis JLW8]
          Length = 605

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 97/174 (55%), Gaps = 8/174 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           + EL +  + IS+ +  D L+G LN      +L         +   LS+   D+D+FK+I
Sbjct: 423 INELTLKLDYISEAAHEDFLTGALNRRGMDEALIREFERSDRHGTSLSLAMLDVDHFKKI 482

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GDK +A LS  +  +  +   + R GGEEF     GS++ +A  + + L++ 
Sbjct: 483 NDTMGHSTGDKALAHLSKVVKGILRSTDVLARYGGEEFVILLPGSNQNDAVTVVSGLQRD 542

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +      + +   + IT SAG+AER H E + +++ RAD ALY+AK+SGRNRVV
Sbjct: 543 L-TKNFFLHNNERVLITFSAGVAERVHGESVDSVLPRADAALYLAKQSGRNRVV 595


>gi|146283999|ref|YP_001174152.1| GGDEF domain-containing protein [Pseudomonas stutzeri A1501]
 gi|145572204|gb|ABP81310.1| GGDEF domain protein [Pseudomonas stutzeri A1501]
          Length = 466

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 114/196 (58%), Gaps = 10/196 (5%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           +L+L ++++ I LL      SI + L +++ +++QL+  D L+G+ +  AF++ L +   
Sbjct: 271 SLALSVVALLIFLLSSRYFQSIAR-LRLAHGQLAQLANTDVLTGVSSRRAFLAGLEAELA 329

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               +NE LS++  DID+FK++ND  GHP+GD V+   S+    +      +GRLGGEEF
Sbjct: 330 RARRHNESLSLLMLDIDHFKRVNDVHGHPIGDAVLKQFSETCAGMLRAHDLLGRLGGEEF 389

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYR 239
           A     +  + A  +A  +R  +  + +  ++G  I +T+S G+A+       +  ++ R
Sbjct: 390 AIVLPHTDAEGARCVAEKIRTAVAQTPMPTAAG-DITVTVSIGLAQMEGLPGEVDQLMAR 448

Query: 240 ADQALYVAKKSGRNRV 255
           ADQALY AK+ GRN+V
Sbjct: 449 ADQALYEAKRGGRNQV 464


>gi|309779577|ref|ZP_07674338.1| diguanylate cyclase [Ralstonia sp. 5_7_47FAA]
 gi|308921818|gb|EFP67454.1| diguanylate cyclase [Ralstonia sp. 5_7_47FAA]
          Length = 387

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 92/174 (52%), Gaps = 12/174 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ QL+ ID L+G L   AFI    +         + +SI   DID FK +ND FGH V
Sbjct: 214 RRMEQLASIDELTGALMRRAFIEKANTVLRETVAKGKPVSIAILDIDEFKAVNDAFGHAV 273

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+ +  ++  +     +    GRLGGEEFA   + + + +AA+L ++LR  +E S I  
Sbjct: 274 GDRTLRHVASVVTARLRSSDLFGRLGGEEFAIICVEAQKADAAVLIDELRLAVEGSPIE- 332

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
                +  T SAG+      + +   + RAD ALY+AK +GRNRVV   ++E  
Sbjct: 333 ----GVRCTFSAGVECVMPGDTLEVALARADAALYLAKATGRNRVVTAPEVEER 382


>gi|313681541|ref|YP_004059279.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313154401|gb|ADR33079.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 482

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 91/167 (54%), Gaps = 9/167 (5%)

Query: 97  YN-RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
           YN ++  ++R D L+GL+N  AF  S   +       N+ LS++FFDID FK IND  GH
Sbjct: 311 YNEKLEFMARNDALTGLMNRHAFDDSFNDFLLLSQRNNDPLSLIFFDIDNFKTINDTLGH 370

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+  +S+ L         +GR GGEEF    + +  + A ++A  LRK IE    
Sbjct: 371 QAGDNVLIRISELLKTRLRRTDIIGRWGGEEFIIGLINTDYKNAEVIAETLRKAIEEDSR 430

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I   P   +T S G+A     + I TI+ RAD A+Y AK+ G+NR+
Sbjct: 431 LIHLAP-FPVTASFGVATVRTGDTIETILTRADSAMYRAKELGKNRI 476


>gi|289166393|ref|YP_003456531.1| regulatory protein (GGDEF domain) [Legionella longbeachae NSW150]
 gi|288859566|emb|CBJ13534.1| putative regulatory protein (GGDEF domain) [Legionella longbeachae
           NSW150]
          Length = 543

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 91/161 (56%), Gaps = 8/161 (4%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLNHS+ ++ L          +  LS V  DID FK IND +GHP GD VI  L+
Sbjct: 379 DSLTGLLNHSSVLNRLNIEITRAKQQDSPLSFVMIDIDNFKLINDTYGHPFGDVVIKKLA 438

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L++       +GR GGEEF     G++ + +  + N+LR    N    ++    +H+T
Sbjct: 439 SMLMMSLRNQDIIGRYGGEEFVLILPGANLENSQKICNNLRLQFSNHTFTVNDH-QVHVT 497

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           IS GI+   H    + I+  ADQALY AK++G+N+VV +S+
Sbjct: 498 ISIGISSLTHSYDFNDIVNYADQALYKAKQNGKNQVVVYSE 538


>gi|270158812|ref|ZP_06187469.1| response regulator diguanylate cyclase (GGDEF) domain-containing
           protein [Legionella longbeachae D-4968]
 gi|269990837|gb|EEZ97091.1| response regulator diguanylate cyclase (GGDEF) domain-containing
           protein [Legionella longbeachae D-4968]
          Length = 481

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 91/161 (56%), Gaps = 8/161 (4%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLNHS+ ++ L          +  LS V  DID FK IND +GHP GD VI  L+
Sbjct: 317 DSLTGLLNHSSVLNRLNIEITRAKQQDSPLSFVMIDIDNFKLINDTYGHPFGDVVIKKLA 376

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L++       +GR GGEEF     G++ + +  + N+LR    N    ++    +H+T
Sbjct: 377 SMLMMSLRNQDIIGRYGGEEFVLILPGANLENSQKICNNLRLQFSNHTFTVNDH-QVHVT 435

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           IS GI+   H    + I+  ADQALY AK++G+N+VV +S+
Sbjct: 436 ISIGISSLTHSYDFNDIVNYADQALYKAKQNGKNQVVVYSE 476


>gi|304570498|ref|YP_002208.2| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 352

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 102/182 (56%), Gaps = 9/182 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           S L  + +  +R+ +L+ +D ++GL  H  F + L    ++       L+++F D+D FK
Sbjct: 170 STLAGIAVENSRLYELATVDMMTGLKVHHYFQTKLKEEMDRCRKKKSYLTLLFTDVDNFK 229

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           + ND  GH  GD+V+  ++ QL+   G      R GGEEF     G+  +    +   +R
Sbjct: 230 KFNDTHGHQAGDQVLIEVAKQLIRQAGKHDIPARYGGEEFCLVMPGADLERGYEMGEMIR 289

Query: 201 KIIENSQI-NISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCF 258
           K +E+S + N + GP + +T+S G++E   K+  +  +I RAD+ALY AK SG+NR VC+
Sbjct: 290 KAVESSSVKNPNGGPDLKVTLSVGVSEFWPKDKNNRDLIERADKALYTAKNSGKNRTVCY 349

Query: 259 SD 260
            +
Sbjct: 350 KE 351


>gi|24214183|ref|NP_711664.1| response regulator [Leptospira interrogans serovar Lai str. 56601]
 gi|24195084|gb|AAN48682.1| response regulator [Leptospira interrogans serovar Lai str. 56601]
          Length = 352

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 102/182 (56%), Gaps = 9/182 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           S L  + +  +R+ +L+ +D ++GL  H  F + L    ++       L+++F D+D FK
Sbjct: 170 STLAGIAVENSRLYELATVDMMTGLKVHHYFQTKLKEEMDRCRKKKSYLTLLFTDVDNFK 229

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           + ND  GH  GD+V+  ++ QL+   G      R GGEEF     G+  +    +   +R
Sbjct: 230 KFNDTHGHQAGDQVLIEVAKQLIRQAGKHDIPARYGGEEFCLVMPGADLERGYEMGEMIR 289

Query: 201 KIIENSQI-NISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCF 258
           K +E+S + N + GP + +T+S G++E   K+  +  +I RAD+ALY AK SG+NR VC+
Sbjct: 290 KAVESSSVKNPNGGPDLKVTLSVGVSEFWPKDKNNRDLIERADKALYTAKNSGKNRTVCY 349

Query: 259 SD 260
            +
Sbjct: 350 KE 351


>gi|212639481|ref|YP_002316001.1| signal transduction diguanylate cyclase [Anoxybacillus flavithermus
           WK1]
 gi|212560961|gb|ACJ34016.1| Signal transduction diguanylate cyclase [Anoxybacillus flavithermus
           WK1]
          Length = 371

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/173 (39%), Positives = 95/173 (54%), Gaps = 20/173 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           N +  L+  D L+GLLN + F+  +        N++ SI+  DID+FK +ND FGHP GD
Sbjct: 207 NSLQALAIQDPLTGLLNRTRFVDLVRVQLHKQNNKEASILIIDIDFFKHVNDQFGHPAGD 266

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  LS  L+  F  P    RLGGEEF      +  ++A  LA  LR        NI++
Sbjct: 267 QVLKDLSAMLMHYFPPPSLSARLGGEEFIIFLPNTHIEQARQLAEMLRG-------NIAT 319

Query: 213 GP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            P      +IHIT S GIA+    +       +ADQALY+AK++GRNRVV  S
Sbjct: 320 FPFSYKHHTIHITASFGIAQAT--DSFQHSYSKADQALYIAKQNGRNRVVVIS 370


>gi|45601364|gb|AAS70845.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 312

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 102/182 (56%), Gaps = 9/182 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           S L  + +  +R+ +L+ +D ++GL  H  F + L    ++       L+++F D+D FK
Sbjct: 130 STLAGIAVENSRLYELATVDMMTGLKVHHYFQTKLKEEMDRCRKKKSYLTLLFTDVDNFK 189

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           + ND  GH  GD+V+  ++ QL+   G      R GGEEF     G+  +    +   +R
Sbjct: 190 KFNDTHGHQAGDQVLIEVAKQLIRQAGKHDIPARYGGEEFCLVMPGADLERGYEMGEMIR 249

Query: 201 KIIENSQI-NISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCF 258
           K +E+S + N + GP + +T+S G++E   K+  +  +I RAD+ALY AK SG+NR VC+
Sbjct: 250 KAVESSSVKNPNGGPDLKVTLSVGVSEFWPKDKNNRDLIERADKALYTAKNSGKNRTVCY 309

Query: 259 SD 260
            +
Sbjct: 310 KE 311


>gi|163789433|ref|ZP_02183872.1| YhcK [Carnobacterium sp. AT7]
 gi|159875287|gb|EDP69352.1| YhcK [Carnobacterium sp. AT7]
          Length = 369

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 93/167 (55%), Gaps = 9/167 (5%)

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           SR D L+GL N  +F        + L   NE  SI+  DID+FKQ+ND +GH  GD V+ 
Sbjct: 197 SRTDPLTGLNNVRSFEFEFNKAKNKLEKSNENFSIMILDIDHFKQVNDQYGHLEGDLVLK 256

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PS 215
            L++ L +   +   + R GGEEF+      + +EA   AN LRKI+ENS   + +G  S
Sbjct: 257 KLAEILKMSQNSNDIISRNGGEEFSVLLNDCNHKEAYEKANALRKIVENSFFILQNGFKS 316

Query: 216 IHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           IHITIS GI            I   ADQALY+AK SGRN+V  +S +
Sbjct: 317 IHITISIGITTYNDTTIKFDNIYDHADQALYLAKNSGRNKVCSYSQV 363


>gi|163784230|ref|ZP_02179155.1| diguanylate cyclase (GGDEF domain) [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880503|gb|EDP74082.1| diguanylate cyclase (GGDEF domain) [Hydrogenivirga sp. 128-5-R1-1]
          Length = 463

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 96/189 (50%), Gaps = 13/189 (6%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNE 127
           +IT+S LL  I G  +        +   LS  D L+GL N   F       I     Y  
Sbjct: 276 NITLSFLLAVILGFSVYIFLKDLEKFRYLSETDRLTGLYNKGKFNEVLQREIQRAKRYKR 335

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            LS++ FDID+FK+IND +GH VGD+V+  L+  +        F  R GGEEF   A  +
Sbjct: 336 PLSLIIFDIDHFKKINDTYGHKVGDEVLKALAKLIKKNIRKTDFAARWGGEEFVILAPET 395

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYV 246
           + + A  LA  LR+ +E  +      P++  +TIS G+A+    E     I RAD ALY 
Sbjct: 396 NVEGAKKLAEKLRQAVETYKF-----PTVGKVTISLGVAQLEPDEKPEDFIVRADMALYK 450

Query: 247 AKKSGRNRV 255
           AK+ GRNRV
Sbjct: 451 AKEGGRNRV 459


>gi|323138179|ref|ZP_08073252.1| diguanylate cyclase [Methylocystis sp. ATCC 49242]
 gi|322396641|gb|EFX99169.1| diguanylate cyclase [Methylocystis sp. ATCC 49242]
          Length = 254

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 122/258 (47%), Gaps = 24/258 (9%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIG--LTPFYGLEYIL 65
           F SIW   E      +    ++Y +I  S+        A +  + +G  L P  G+  ++
Sbjct: 2   FASIWRVKEPRTRRDALRLVLLYAAISVSVSALVTAAFARMNGWPLGPALIPAIGIPLLV 61

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
              ++  + S  + L        + +EL        +L+RID LSG LN          +
Sbjct: 62  APWMTWTVASAALRL------HEMRQEL-------ERLARIDPLSGALNRRGLAEFAARH 108

Query: 126 ------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGE 178
                 + K   +  D+D FK IND FGH  GD VIA ++D + ++ GT    VGR GG+
Sbjct: 109 FAERRESGKFCAIVADVDRFKTINDAFGHAAGDAVIARVADIMRLIVGTRDCAVGRFGGD 168

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTII 237
           E  A  +G S +E  ILA +LR  IE + I +     I +T S G+A           ++
Sbjct: 169 ELGALIVGLSLEETMILAENLRAAIERT-IFLHGDRRIPVTTSIGVAAVDVDDATPEAML 227

Query: 238 YRADQALYVAKKSGRNRV 255
            RADQ+LY AK++GRNRV
Sbjct: 228 NRADQSLYAAKEAGRNRV 245


>gi|148270329|ref|YP_001244789.1| diguanylate cyclase [Thermotoga petrophila RKU-1]
 gi|147735873|gb|ABQ47213.1| diguanylate cyclase [Thermotoga petrophila RKU-1]
          Length = 258

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/159 (41%), Positives = 90/159 (56%), Gaps = 14/159 (8%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+L+   F+  L         Y   LSI+  D D FK+IND FGH  GDK + +L 
Sbjct: 97  DPLTGVLSRWYFMERLEEEAYKSSRYKSPLSIIMCDADDFKKINDQFGHVAGDKTLNWLG 156

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            ++  V      VGR GGEEF  A  G+S +EA I+A  LRK +     NI      H+T
Sbjct: 157 RKMRSVLRKSDLVGRYGGEEFIIALPGTSLEEAKIVAEKLRKAVMEDPENI-----YHVT 211

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+AE +  ++P+ T I RAD+ALY+AK  G+N VV 
Sbjct: 212 LSFGVAEYKNGEDPLET-IKRADEALYLAKTLGKNSVVT 249


>gi|119945575|ref|YP_943255.1| diguanylate cyclase [Psychromonas ingrahamii 37]
 gi|119864179|gb|ABM03656.1| diguanylate cyclase [Psychromonas ingrahamii 37]
          Length = 477

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 94/177 (53%), Gaps = 8/177 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           ILK +   Y  +  L++ D L+ L N  AF   L             LS+ FFD+D FK 
Sbjct: 302 ILKTVNKYYKEMEHLAKYDALTNLKNRRAFNEELEHSLLLCKRRASHLSLTFFDLDDFKS 361

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND FGH  GDKV+ +++D L         +GR GGEEF  A + +  ++A  +   +R 
Sbjct: 362 VNDTFGHQTGDKVLQYVADILKDDIRQTDIIGRWGGEEFIVAFIDTELEDAKFITEKIRA 421

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            IE     +S   ++ +T S G+     ++ + +++ RADQALY AK++G+N+V C 
Sbjct: 422 HIEKDSF-LSQLKNMKVTASFGLTTITTQDTLDSLLERADQALYKAKENGKNQVFCL 477


>gi|327482326|gb|AEA85636.1| GGDEF domain-containing protein [Pseudomonas stutzeri DSM 4166]
          Length = 485

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 113/196 (57%), Gaps = 10/196 (5%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           +L+L ++++ I LL      SI + L +++ +++QL+  D L+G+ +  AF++ L +   
Sbjct: 290 SLALSVVALLIFLLSSRYFQSIAR-LRLAHGQLAQLANTDVLTGVSSRRAFLAGLEAELA 348

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               +NE LS++  DID+FK++ND  GHP+GD V+   S+    +       GRLGGEEF
Sbjct: 349 RARRHNESLSLLMLDIDHFKRVNDVHGHPIGDAVLKQFSETCAGMLRAHDLFGRLGGEEF 408

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYR 239
           A     +  + A  +A  +R  +  + +  ++G  I +T+S G+A+       +  ++ R
Sbjct: 409 AIVLPHTDAEGARCVAEKIRTAVAQTPMPTAAG-DITVTVSIGLAQMEGLPGEVDQLMAR 467

Query: 240 ADQALYVAKKSGRNRV 255
           ADQALY AK+ GRN+V
Sbjct: 468 ADQALYEAKRGGRNQV 483


>gi|237756213|ref|ZP_04584777.1| signal transduction response regulator [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691623|gb|EEP60667.1| signal transduction response regulator [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 349

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 91/165 (55%), Gaps = 8/165 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS----YNEK---LSIVFFDIDYFKQINDNFGHPVGD 152
           + Q + +D L+GL N  +F  +L      +NEK    +++  D+D FKQIND FGHP GD
Sbjct: 184 VKQEATLDFLTGLTNRRSFDRALNDLIKDFNEKKIPFTLILLDLDNFKQINDKFGHPAGD 243

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  +S+ L         +GRLGGEEF       + +    +A  +R +IEN +I    
Sbjct: 244 LVLKEVSNLLRTYLRANTIIGRLGGEEFGIILPNVTLENGKNVAEIIRNVIENHEIK-YD 302

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           G  I I+ S G+A+    + I TI  R D+ALY AK+ G+N+VV 
Sbjct: 303 GNVIRISASLGVAQVKEGDTIDTIYRRVDEALYQAKRDGKNKVVV 347


>gi|159185045|ref|NP_355056.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
 gi|159140319|gb|AAK87841.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
          Length = 269

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 119/243 (48%), Gaps = 21/243 (8%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPF--YGLEYILVENLSLVI-----ISITISLLLGYISG 87
           FS+ IA ++ +  I +   GLT    +GL   L   + L +     ++ T++LL+ +++ 
Sbjct: 31  FSVRIACLVTLIVIVMCTGGLTLLAQFGLVTDLFNGIMLSVTLGGAVAFTVTLLVCWLNA 90

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
             ++ L  S+ R   LS  D L+GL N     ++         + F DID+FK +ND + 
Sbjct: 91  REVQILVQSHERFLHLSHTDALTGLSNRLGLYAACAELGSDYCVAFLDIDHFKAVNDGYS 150

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD VIA ++ ++   F  P  V RLGGEEF         QE + LA    ++ E  +
Sbjct: 151 HLVGDLVIASVARRIKEHFDPPAHVARLGGEEFVVV------QETSPLA--FLQMCERVR 202

Query: 208 INISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             I + P       I +TIS G+A R   E    +++ AD ALY AK  GRNRV     +
Sbjct: 203 AAIETTPVAYQDLRITVTISIGVAFRGDAEIFDKVMHNADLALYRAKGGGRNRVCMSGHV 262

Query: 262 ENN 264
           E  
Sbjct: 263 ERR 265


>gi|220931247|ref|YP_002508155.1| diguanylate cyclase [Halothermothrix orenii H 168]
 gi|219992557|gb|ACL69160.1| diguanylate cyclase [Halothermothrix orenii H 168]
          Length = 556

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 85/156 (54%), Gaps = 1/156 (0%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D ++G+ NH   +S+L    E  S+V  D+D FK IND +GH  GD+VI  ++  L    
Sbjct: 395 DSMTGIYNHHYIVSTLSRMKEPFSLVVLDLDNFKNINDTYGHLAGDEVIKNVAINLQNSI 454

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
               +VGR GG+EF    +  S  E  ++A  +++ +E   +    G  I +T S GI  
Sbjct: 455 RKYDYVGRYGGDEFVIILMNCSLDELKMMAKKIKRAVEEP-VYKYKGNKIRVTASMGIYN 513

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              KE    +IYRADQALY AKKSGR+ +  ++  E
Sbjct: 514 ATEKEEGEQVIYRADQALYAAKKSGRSGIKMWTKSE 549


>gi|95930947|ref|ZP_01313676.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
 gi|95132956|gb|EAT14626.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
          Length = 648

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 92/166 (55%), Gaps = 7/166 (4%)

Query: 98  NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +L+  D L+G +N          F      Y + LS++F+D+D+FK +ND +GH  
Sbjct: 481 QKLERLATTDELTGAVNRRQLFIYTDQFCQLAKRYKKALSVIFYDLDHFKAVNDTYGHAA 540

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  ++ ++  +      + R GGEEF      +    A + A  +R+ I  S +N+
Sbjct: 541 GDEVLRQITTRIQSMLRDTDILARYGGEEFCILVPETDGDHAYLFAERIRQRISESSVNL 600

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           SSG S+ +T+S G+A     E  S++I RADQ +Y AK+ GRN VV
Sbjct: 601 SSGESLQVTVSMGVATYQEDEQGSSLIDRADQGVYEAKRRGRNCVV 646


>gi|225850806|ref|YP_002731040.1| response regulator receiver modulated diguanylate cyclase
           [Persephonella marina EX-H1]
 gi|225645373|gb|ACO03559.1| response regulator receiver modulated diguanylate cyclase
           [Persephonella marina EX-H1]
          Length = 359

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/194 (36%), Positives = 100/194 (51%), Gaps = 16/194 (8%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           ++L Y+  S    L  SY +I +L+  D L+G  N       L         Y   LS++
Sbjct: 164 MVLAYVFES---ALLSSYEKIKKLATTDPLTGAFNRYQLFKKLEEEIERSKRYGNHLSLI 220

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            FDID FK IND +GH +GD+V+    D +         +GR GGEEF     G +++ A
Sbjct: 221 MFDIDNFKSINDTYGHNIGDQVLKITIDTIKNHIRKTDTLGRFGGEEFMIICPGINDEGA 280

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             +A  +RK++++  I +   P   ITIS G+AE    E I+  I +AD ALY AKK G+
Sbjct: 281 RNIAEKIRKLVKD--IKVEGIP--EITISVGVAEYFPDESITDFIKKADIALYSAKKKGK 336

Query: 253 NRVVCFSDIENNTC 266
           NRV  +S    N C
Sbjct: 337 NRVEIYSS--ENVC 348


>gi|316935023|ref|YP_004110005.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
 gi|315602737|gb|ADU45272.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
          Length = 359

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 98/180 (54%), Gaps = 11/180 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136
           Y  G  L+E   +Y RI +L+ +D L+G  N    +  L +  E+       LS+   D+
Sbjct: 182 YKRGIQLRE---AYQRIEELAELDELTGAYNRRRIMRHLDNEIERAARLCEPLSLALIDL 238

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND FGHP GD+V+   +  +     +    GR GGEEF      +SE EA ++ 
Sbjct: 239 DWFKRINDTFGHPTGDEVLRTFAITIFANIRSFDRFGRYGGEEFLLLLPNTSEDEARLIL 298

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + LR I+     +  S PS+ +T+SAG+     +E   +++ RAD+ALY AK  GRNRV 
Sbjct: 299 DRLRLIVAGLDWSAFS-PSMSVTLSAGVTTMTLQESTESVLSRADRALYEAKHGGRNRVA 357


>gi|317052641|ref|YP_004113757.1| diguanylate cyclase [Desulfurispirillum indicum S5]
 gi|316947725|gb|ADU67201.1| diguanylate cyclase [Desulfurispirillum indicum S5]
          Length = 551

 Score =  108 bits (271), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/175 (37%), Positives = 93/175 (53%), Gaps = 11/175 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S+L   D L+GL NHS     L           + LS+   D+D FK +ND +GH VGD
Sbjct: 379 LSELMARDSLTGLFNHSRIKEQLVIELARAKRSGKPLSVAMLDMDKFKTVNDTYGHGVGD 438

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-IS 211
           +VI  L+  L         VGR GGEEFAA         A  + +D+R+     Q++ +S
Sbjct: 439 RVIKTLAHLLQQRARQSDTVGRYGGEEFAAILPDCDRDAAWKIVDDIRQRF--GQVSFVS 496

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            G   H+T+SAGIA   H +   T++  AD+ALY AK +GRNR VC + +E+   
Sbjct: 497 GGREFHVTLSAGIAASSHYDDSETLLVAADEALYHAKHTGRNR-VCMAPVESTEA 550


>gi|170727262|ref|YP_001761288.1| sensor diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169812609|gb|ACA87193.1| 7TM domain sensor diguanylate cyclase [Shewanella woodyi ATCC
           51908]
          Length = 623

 Score =  108 bits (271), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 96/178 (53%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEK----LSIVFFDIDYFKQI 142
           K+L  +  +    +R+D L+GL N  AFI S    L   N +    L ++  DID+FK+I
Sbjct: 439 KQLLEAKEKAETEARVDILTGLTNRRAFIESAHGFLARANRQPETHLYLLMIDIDHFKKI 498

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  +++ L     T   V RLGGEEFAA       Q A  L+  LRK 
Sbjct: 499 NDTYGHSAGDAALVAVANSLSETIRTIDVVSRLGGEEFAALMENKDPQGAINLSERLRKA 558

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV--VCF 258
           IE   I    G  I +T S GIA+    + + T++ +AD+ALY AK+SGRN V   CF
Sbjct: 559 IEELVIE-HEGQQIKLTTSIGIAKWGPMDNLDTLMNQADRALYQAKESGRNCVNSSCF 615


>gi|291286670|ref|YP_003503486.1| diguanylate cyclase with PAS/PAC sensor [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290883830|gb|ADD67530.1| diguanylate cyclase with PAS/PAC sensor [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 622

 Score =  108 bits (271), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 88/166 (53%), Gaps = 11/166 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I +LS  D L+GL N     + L +       +N +      D D+FK++ND +GH VG
Sbjct: 460 KIEELSITDRLTGLYNRHKLDAVLKAERIRNERHNTRFCAAILDADHFKRVNDTYGHQVG 519

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  L+  +        F GR GGEEF   AL +     A LA+ LRK +E +     
Sbjct: 520 DDVLVKLAAIIKENTRESDFCGRWGGEEFLVVALETDITNTAFLADKLRKAVEETDFT-- 577

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             P   +T+S G+AE    E I+  I RAD+ALY AK++GRNRVV 
Sbjct: 578 --PVEKVTVSIGVAEYSRGETIAHFINRADEALYKAKQTGRNRVVS 621


>gi|258406452|ref|YP_003199194.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
 gi|257798679|gb|ACV69616.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
          Length = 578

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 109/224 (48%), Gaps = 26/224 (11%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101
           ++      +++  LTP Y  E I              + ++G  S   + E   +   + 
Sbjct: 370 LVLPGGTRVWHTTLTPVYEEERI--------------TSIVG--SAQDITERKRAEEHLR 413

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            L+  D L+GL N   F+  L +       Y + L+++  DID+FK IND  GH VGD  
Sbjct: 414 YLATTDELTGLYNRRHFMEILDTEIERAKRYEQSLALISLDIDHFKTINDTHGHAVGDAA 473

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  L+ QL+     P  +GRLGGEEFA  A  +    A  LA  +R  +E + I + S  
Sbjct: 474 LEHLAAQLLACKRQPDSLGRLGGEEFALIAPHTDRAGATELAERIRSELERTPIELES-T 532

Query: 215 SIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S+H TIS G+        + I  ++ RAD ALY AK++GRNR V
Sbjct: 533 SLHPTISLGVTALNIQDNDTIDALLKRADDALYEAKRTGRNRTV 576


>gi|183220727|ref|YP_001838723.1| hypothetical protein LEPBI_I1337 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910828|ref|YP_001962383.1| GGDEF domain-containing response regulator [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167775504|gb|ABZ93805.1| Response regulator, GGDEF family [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779149|gb|ABZ97447.1| Conserved hypothetical protein with GGDEF domain [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 353

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 9/171 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +L+ +D ++GL  H  F + L    E       KLS++F D+D FK  ND +GH  G
Sbjct: 183 RLYELATVDMMTGLKIHHYFQTKLKEEMERCRKKGTKLSLLFTDVDKFKTFNDTYGHQAG 242

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           D V+  ++ QL+          R GGEEF     G+SE+EA     ++RK +E   + N 
Sbjct: 243 DVVLIEVAKQLIQKAQRHHIPARYGGEEFCLVMPGASEEEAIAKGEEIRKAVEEMVVKNP 302

Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +    + +T+S G++  R        +I RAD+ALY AK SGRNR +C+ D
Sbjct: 303 NDDSDLKVTLSVGVSSFRPTDRNNKDLIERADKALYQAKHSGRNRTICYKD 353


>gi|119776148|ref|YP_928888.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B]
 gi|119768648|gb|ABM01219.1| GGDEF domain-like protein [Shewanella amazonensis SB2B]
          Length = 385

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 93/172 (54%), Gaps = 6/172 (3%)

Query: 89  ILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQIN 143
           ++ E + + N   +  L+  D L+GL N  AF+  L          S++  D+D+FKQIN
Sbjct: 198 LISEYYAAQNEQELQYLADTDSLTGLPNRRAFMGRLERTIKDRRSFSLLIIDVDHFKQIN 257

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD  + FL++QL        F GR+GGEEFA     +S  E  + A  LRK I
Sbjct: 258 DTTGHQTGDAALQFLANQLNACIQGEDFAGRIGGEEFAMVQFCASPLEHLVRAESLRKTI 317

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++  ++  GP +++T+S G+        + T++  AD ALY AK+SGRN V
Sbjct: 318 ASAHPDLGVGP-VYLTVSIGVCMATPPVSLITLMAMADNALYEAKRSGRNCV 368


>gi|117925921|ref|YP_866538.1| diguanylate cyclase [Magnetococcus sp. MC-1]
 gi|117609677|gb|ABK45132.1| diguanylate cyclase [Magnetococcus sp. MC-1]
          Length = 220

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 106/193 (54%), Gaps = 11/193 (5%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSY 125
           I+   ISL+  ++  S+ K L     ++  ++  D L+G+LN   F       I     +
Sbjct: 25  IMRTIISLVGAWLIYSLRKAL----QQLEVMATHDKLTGILNRHGFQERGKYIIDQSQRH 80

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           +  L++V  DID+FK+IND+FGH +GD V+  L  +L     +   V RLGGEEFA    
Sbjct: 81  SWPLAVVMMDIDHFKKINDSFGHDIGDLVLQSLGSELKKSVRSTDIVARLGGEEFALILP 140

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            +  + A  +A+ +RK IE S++++  G  +  T+S G+      + +  ++ +AD ALY
Sbjct: 141 NTDSKHAHQIADSIRKKIETSRLSLPDGKFLTYTLSLGVTSGLGIDKMDLLLNQADNALY 200

Query: 246 VAKKSGRNRVVCF 258
            AK +GRNRVV F
Sbjct: 201 RAKGTGRNRVVSF 213


>gi|217975113|ref|YP_002359864.1| diguanylate cyclase [Shewanella baltica OS223]
 gi|217500248|gb|ACK48441.1| diguanylate cyclase [Shewanella baltica OS223]
          Length = 385

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 90/163 (55%), Gaps = 8/163 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
             +S L+  D L+GL N  AF+    S + S N  +S++  D+D FK+IND  GH VGD 
Sbjct: 219 KELSTLASQDSLTGLFNRRAFMHNATSIIASENFPVSVLMLDLDNFKKINDVHGHNVGDT 278

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+   +D L         +GR GGEEFAA    +  ++A +++  LR  IE   +N    
Sbjct: 279 VLKLCADALQDGLKQYGIIGRFGGEEFAAILPRADSEQALVVSEKLRLAIETINVN---- 334

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           P I ++IS G+A       I  ++ RAD+ALY AK  GRN+V+
Sbjct: 335 PDIRLSISIGVATSSSVSSIEPLLIRADKALYEAKSKGRNQVI 377


>gi|219848276|ref|YP_002462709.1| diguanylate cyclase [Chloroflexus aggregans DSM 9485]
 gi|219542535|gb|ACL24273.1| diguanylate cyclase [Chloroflexus aggregans DSM 9485]
          Length = 369

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 99/179 (55%), Gaps = 11/179 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           SI + L I Y  + + + ID L+GL N       L +       Y++ L+I  +DID+FK
Sbjct: 195 SISQRLQIEYQLMQEWAFIDMLTGLFNRRRCEQLLQTNIEYSRRYHQPLTICLWDIDHFK 254

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND +GH VGD+V+  ++        +   VGR GGEEF      +   EA  L + LR
Sbjct: 255 QVNDTYGHEVGDQVLRQIARLAQSSTRSTDLVGRWGGEEFCLILPHTCLSEAEELVDRLR 314

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +I+ +Q+ +   P   +T S G+ E    + ++++I RAD+ALY AK +GRNRVV  +
Sbjct: 315 HLIK-TQVRVGQQP---VTASFGLVEYDTTDNLASLIRRADEALYAAKAAGRNRVVVMA 369


>gi|193299441|gb|ACF17869.1| DcpA [Vibrio vulnificus]
          Length = 379

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 102/186 (54%), Gaps = 21/186 (11%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
           +++  I K   I  N++ +L+ +D L+G LN  AF+ +          Y+ K +++  D+
Sbjct: 195 WVAAQIYKHKQI--NKMIELAHLDPLTGALNRRAFVEATYFINDKPRQYDHKTALLMLDL 252

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK IND +GHPVGDKV+  ++  L     +   V RLGGEEFA      +  EA  LA
Sbjct: 253 DKFKAINDAYGHPVGDKVLIEIAQILKNSVRSDDLVARLGGEEFAILLRHVNADEALRLA 312

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST------IIYRADQALYVAKKS 250
             LR ++E + +      +IH TIS GIA      P+ T      ++ RAD ALYVAK+ 
Sbjct: 313 ELLRAMVEQTVVE-HQNQAIHCTISIGIA-----LPLPTDQGFEELMQRADNALYVAKRK 366

Query: 251 GRNRVV 256
           GRN+++
Sbjct: 367 GRNQII 372


>gi|227113735|ref|ZP_03827391.1| putative signaling membrane protein [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 489

 Score =  108 bits (269), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 97/184 (52%), Gaps = 16/184 (8%)

Query: 94  FISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS-----YNEK---LSIVFFDIDYFK 140
           F+S NR     I   S  D L+   N  AF+S L        N+K   L+++F DIDYFK
Sbjct: 305 FVSMNRRLIKIIESSSLKDALTNTFNRRAFLSMLNGRQGVLMNKKKRPLTLLFLDIDYFK 364

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND +GH  GD++IA  +  L         + R GGEEF  AA   + +++  +A  LR
Sbjct: 365 QVNDTYGHASGDELIASFARMLSAAIRPSDILCRWGGEEFVIAAYDLTAEQSEAMAEALR 424

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCF 258
           ++ E++ + +S G  IH T S G+A     E   I  +I  AD+ LY AK  GRNR VC 
Sbjct: 425 RLTESTALMLSDGRKIHFTTSIGVAIFSQYEGGNIYDLIGLADEQLYKAKTQGRNR-VCM 483

Query: 259 SDIE 262
             +E
Sbjct: 484 RLVE 487


>gi|229529570|ref|ZP_04418960.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229333344|gb|EEN98830.1| GGDEF family protein [Vibrio cholerae 12129(1)]
          Length = 691

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIN
Sbjct: 509 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIAVLDIDHFKQIN 568

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D + H +GD+ I  +S +L+   G    V R GGEEF    +G  +Q        LR  I
Sbjct: 569 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPQQAWGYFEK-LRCKI 627

Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E  Q+++S+  P +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 628 E--QVDLSAVAPGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 679


>gi|229505065|ref|ZP_04394575.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229511265|ref|ZP_04400744.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229518383|ref|ZP_04407827.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229608069|ref|YP_002878717.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|229345098|gb|EEO10072.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229351230|gb|EEO16171.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229357288|gb|EEO22205.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229370724|gb|ACQ61147.1| GGDEF family protein [Vibrio cholerae MJ-1236]
          Length = 691

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIN
Sbjct: 509 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIALLDIDHFKQIN 568

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D + H +GD+ I  +S +L+   G    V R GGEEF    +G  +Q        LR  I
Sbjct: 569 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPKQAWGYFEK-LRCKI 627

Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E  Q+++S+  P +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 628 E--QVDLSAVAPGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 679


>gi|262376901|ref|ZP_06070128.1| predicted protein [Acinetobacter lwoffii SH145]
 gi|262308246|gb|EEY89382.1| predicted protein [Acinetobacter lwoffii SH145]
          Length = 440

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 125/242 (51%), Gaps = 23/242 (9%)

Query: 29  IYFSIFFSIFI----ATVIFIANIFLFYIGLTPFYGLE-YILVENLSLVIISITISLLLG 83
           +Y SI  ++FI    +  +  +  F+F +  +P +    YI   N    I+++  S L  
Sbjct: 179 VYCSILIALFIMLGVSQFMSASQAFIFSVVFSPLWFFSIYINWNN----ILNVRRSFL-- 232

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEKLS--IVFFDID 137
               S+L E   +Y  +  L+  D L+ L N   F+     S+  + +  S  ++ FD+D
Sbjct: 233 ---RSLLDEW--NYQTLKNLAHTDDLTQLYNRRHFVDMAERSIHQWPKHASSCLLMFDVD 287

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK IND++GH VGD+V+  +++           + R GGEEF A    +  Q++ ++A 
Sbjct: 288 HFKNINDSYGHDVGDRVLQLIAEVTRKEMRHSDVLARFGGEEFIALLEDTQLQDSLVIAE 347

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +R  I+   I +    +I  TIS G+AE   H +P+  +I +AD ALY AKKSGRNR+ 
Sbjct: 348 RIRCAIQKQYIYVEPNHTIRFTISIGVAELESHTQPLEDLIKQADIALYQAKKSGRNRIE 407

Query: 257 CF 258
            +
Sbjct: 408 VY 409


>gi|188580235|ref|YP_001923680.1| diguanylate cyclase [Methylobacterium populi BJ001]
 gi|179343733|gb|ACB79145.1| diguanylate cyclase [Methylobacterium populi BJ001]
          Length = 363

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 1/160 (0%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++  + +++R D L+G LN     ++ G       ++  D+D+FK IND FGH  GD V+
Sbjct: 202 AHAALRRMARTDALTGALNREGLAAAAGGDPGPAGVIVADLDHFKSINDRFGHAGGDAVL 261

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              + +   +      + RLGGEEF     G +    A LA  LR  +  + +      +
Sbjct: 262 REFTRRSAGLLPEGALLARLGGEEFGIVLPGHAPNATAYLAERLRHAVGATPVPWRDA-A 320

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           I +T+S G+A R   E +   I RAD+ALYVAK +GRNRV
Sbjct: 321 IPVTVSVGVARRADGESLHEAIDRADRALYVAKTAGRNRV 360


>gi|153213495|ref|ZP_01948806.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|124115959|gb|EAY34779.1| GGDEF family protein [Vibrio cholerae 1587]
          Length = 791

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIN
Sbjct: 609 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIAVLDIDHFKQIN 668

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D + H +GD+ I  +S +L+   G    V R GGEEF    +G  +Q        LR  I
Sbjct: 669 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPKQAWGYFEK-LRCKI 727

Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E  Q+++S+  P +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 728 E--QVDLSAVAPGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 779


>gi|120602347|ref|YP_966747.1| diguanylate cyclase [Desulfovibrio vulgaris DP4]
 gi|120562576|gb|ABM28320.1| diguanylate cyclase [Desulfovibrio vulgaris DP4]
          Length = 331

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 100/188 (53%), Gaps = 11/188 (5%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LS 130
           + + L   S + L+E   +   +++    D L+GL N  AF   L +  E+       LS
Sbjct: 110 LPVELSRDSCTNLREWQRTIEEMARQRDTDPLTGLPNRRAFTRHLEAELERTRRGRGDLS 169

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +V  DID+FK +NDN+GHP GD+V+  L+ QL           R+GGEEFA    G+S  
Sbjct: 170 LVILDIDHFKSVNDNYGHPCGDEVLLRLASQLQTSVRLYDLAARIGGEEFAIVLPGASAL 229

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVA 247
           +A  L   + +   ++ ++    P  H+T S GIA  C      P S ++ RAD+ALY A
Sbjct: 230 KAQALCERILQRFASTGMDCPGVPPFHVTFSGGIAT-CTTGVTCPASLLVDRADKALYEA 288

Query: 248 KKSGRNRV 255
           K++GRNR+
Sbjct: 289 KQAGRNRI 296


>gi|218530214|ref|YP_002421030.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium chloromethanicum CM4]
 gi|218522517|gb|ACK83102.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium chloromethanicum CM4]
          Length = 298

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 92/167 (55%), Gaps = 12/167 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +L+  D L+GLLN  AF+       +K      L  V  DID+FK+IND  GH VGD  I
Sbjct: 131 RLAETDSLTGLLNRRAFLQRTREAAQKAGSFGHLCAVILDIDHFKRINDEHGHDVGDAAI 190

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  ++ V G     GRLGGEEFA    G    EA  +A+ LR    + +I  + GP 
Sbjct: 191 KAVAG-MIEVEG---IAGRLGGEEFAVMLAGQRLTEAEAVASRLRLKTSDLRIRSTKGP- 245

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV-CFSDI 261
           + +T S G++E    E +  ++ RAD ALY AK +GRNRVV   SD+
Sbjct: 246 VRLTCSFGVSEWSEGETVEGLLKRADIALYEAKTTGRNRVVSAMSDL 292


>gi|89092394|ref|ZP_01165348.1| PAS/PAC sensor hybrid histidine kinase [Oceanospirillum sp. MED92]
 gi|89083482|gb|EAR62700.1| PAS/PAC sensor hybrid histidine kinase [Oceanospirillum sp. MED92]
          Length = 1079

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 70/185 (37%), Positives = 97/185 (52%), Gaps = 14/185 (7%)

Query: 79   SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSI 131
            S ++GY +   + E      RI +LS  D L+GL N       L +  E       K S+
Sbjct: 889  SEVVGYRA---ISENITDQKRIEELSVTDTLTGLNNRLKIDELLAAQMERHERHGLKFSV 945

Query: 132  VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
            +  D+D FK +NDNFGH VGDK++  L++ L         VGR GGEEF      +S   
Sbjct: 946  LLLDVDNFKHVNDNFGHDVGDKLLKDLANVLKSNVRKIDTVGRWGGEEFVVICENTSSAN 1005

Query: 192  AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
            A +LA  LR II  +   +        T+S GI+E    + +STI  RADQALYVAK +G
Sbjct: 1006 AYVLAEKLRTIIAETDFGVVG----QKTVSIGISELYDGDSLSTIFKRADQALYVAKHNG 1061

Query: 252  RNRVV 256
            +N+V+
Sbjct: 1062 KNQVM 1066


>gi|302391652|ref|YP_003827472.1| diguanylate cyclase [Acetohalobium arabaticum DSM 5501]
 gi|302203729|gb|ADL12407.1| diguanylate cyclase [Acetohalobium arabaticum DSM 5501]
          Length = 294

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/176 (37%), Positives = 95/176 (53%), Gaps = 10/176 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIN 143
           K+L  + + I +LS+ D L+GL N   F+       S    Y++ LS+V  D+D FK IN
Sbjct: 118 KKLQQAKDEIEKLSKTDELTGLANRRHFMNYLQKIFSQAQRYSQSLSLVMIDLDKFKNIN 177

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GDKV++ L D L           R+GGEEF      +   +A   A  +RK I
Sbjct: 178 DTYGHDAGDKVLSALGDLLNNETRNEDLAARIGGEEFIVILTQTDLNDARNYAERIRKKI 237

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             S++NI S P + IT S G+A   + +   +I  RAD+ALY AK SGR++V  + 
Sbjct: 238 --SKLNIESIP-VKITASLGVATMKNNDDYESIFNRADEALYKAKNSGRDKVCKYK 290


>gi|323497117|ref|ZP_08102137.1| putative GGDEF protein [Vibrio sinaloensis DSM 21326]
 gi|323317692|gb|EGA70683.1| putative GGDEF protein [Vibrio sinaloensis DSM 21326]
          Length = 321

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/174 (40%), Positives = 91/174 (52%), Gaps = 9/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDN 145
           L  S  ++S LSR D L+ L N   + S L    E         S+V FDID+FK++ND 
Sbjct: 143 LMDSNQKLSDLSRTDGLTKLFNRRYWESCLLKEFETCKVSGSVSSLVIFDIDHFKKVNDT 202

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH VGD VI   SD+L     T    GR GGEEF     G+   +A      LRK IE 
Sbjct: 203 YGHTVGDHVIRHASDELRKASRTSDICGRYGGEEFTVILPGTCANQALYFTERLRKKIEQ 262

Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S I    G +++ TIS GI E   H+    T +  AD+ALY +K++GRNR   F
Sbjct: 263 SII-ACEGYNVNYTISLGICEISAHQTNHLTWLEHADKALYFSKETGRNRSTVF 315


>gi|119468711|ref|ZP_01611763.1| putative GGDEF domain membrane protein [Alteromonadales bacterium
           TW-7]
 gi|119447767|gb|EAW29033.1| putative GGDEF domain membrane protein [Alteromonadales bacterium
           TW-7]
          Length = 344

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/195 (36%), Positives = 109/195 (55%), Gaps = 14/195 (7%)

Query: 71  LVIISITISLLLGYISGSILKELF-----ISYNRISQLSRIDCLSGL-----LNHSAFIS 120
           +V +++ I+LLL Y+S   +  +F     +S  R+  L+ +D L+G      +NH   + 
Sbjct: 139 IVNLNMAINLLLAYVSIWTVSHIFEGSRALSSKRLKNLALLDPLTGAGNRLSMNHYFEVE 198

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            +   N  L ++  D+DYFKQIND FGH VGDKV+  ++  L +      +V R+GGEEF
Sbjct: 199 LVDKTNTYLFLL--DLDYFKQINDKFGHDVGDKVLTEIATLLRITLAKG-YVFRVGGEEF 255

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
           A     +S+ EA   A  LR+ +E +  NI  G +I +TIS G+A+      + +I   A
Sbjct: 256 AVIHSFNSKDEALFAAEKLRETVEKTPFNI-EGHAIKLTISIGVADYQANPSLESIFIAA 314

Query: 241 DQALYVAKKSGRNRV 255
           D  LY AK+ GRN+V
Sbjct: 315 DIQLYKAKRLGRNKV 329


>gi|229521460|ref|ZP_04410879.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
 gi|229341558|gb|EEO06561.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
          Length = 691

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIN
Sbjct: 509 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIALLDIDHFKQIN 568

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D + H +GD+ I  +S +L+   G    V R GGEEF    +G  +Q        LR  I
Sbjct: 569 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPKQAWGYFEK-LRCKI 627

Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E  Q+++S+  P +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 628 E--QVDLSAVAPGLNVTVSIGFADVQQAESYETVLKLADHALLTAKKLGRNRVV 679


>gi|297578939|ref|ZP_06940867.1| GGDEF family protein [Vibrio cholerae RC385]
 gi|297536533|gb|EFH75366.1| GGDEF family protein [Vibrio cholerae RC385]
          Length = 976

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 66/174 (37%), Positives = 97/174 (55%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIN
Sbjct: 794 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIAVLDIDHFKQIN 853

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D + H +GD+ I  +S +L+   G    V R GGEEF    LG  +Q        LR  I
Sbjct: 854 DRYSHIIGDQAIVAVSQELLRYVGDKTRVARWGGEEFTILYLGDPKQAWGYF-EKLRCKI 912

Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E  Q+++S+  P +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 913 E--QVDLSAVAPGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 964


>gi|46580271|ref|YP_011079.1| GGDEF domain-containing protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449688|gb|AAS96338.1| GGDEF domain protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|311233747|gb|ADP86601.1| diguanylate cyclase [Desulfovibrio vulgaris RCH1]
          Length = 331

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/176 (36%), Positives = 95/176 (53%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           L+E   +   +++    D L+GL N  AF   L +  E+       LS+V  DID+FK +
Sbjct: 122 LREWQRTIEEMARQRDTDPLTGLPNRRAFARHLEAELERTRRGRGDLSLVILDIDHFKSV 181

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           NDN+GHP GD+V+  L+ QL           R+GGEEFA    G+S  +A  L   + + 
Sbjct: 182 NDNYGHPCGDEVLLRLASQLQTSVRLYDLAARIGGEEFAIVLPGASALKAQALCERILQR 241

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRV 255
             ++ ++    P  H+T S GIA  C      P S ++ RAD+ALY AK++GRNR+
Sbjct: 242 FASTGMDCPGVPPFHVTFSGGIAT-CTTGVTCPASLLVDRADKALYEAKQAGRNRI 296


>gi|254459339|ref|ZP_05072760.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207083952|gb|EDZ61243.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 565

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 88/165 (53%), Gaps = 9/165 (5%)

Query: 104 SRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           ++ D LSGL N   F             Y E LSI+  D+D FK+IND +GH  GD VI 
Sbjct: 401 AKTDLLSGLHNRRYFSEMSQKSFLQAKRYEENLSIILLDLDKFKKINDTYGHQTGDIVIK 460

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             +D L  +      V R GGEEF      ++  EA ++A ++RK IE+++I+  S    
Sbjct: 461 VTADILKYLNREDDIVARYGGEEFIILLPHTNLYEALVIAENIRKKIESTEIHSESDDIF 520

Query: 217 HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           H+T S G+A+    + E IS  I R D A+Y AK+ GRN+V   S
Sbjct: 521 HVTASIGVAQLDTINDENISKTIQRCDNAMYKAKQRGRNKVFSLS 565


>gi|261820078|ref|YP_003258184.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
 gi|261604091|gb|ACX86577.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
          Length = 489

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/177 (37%), Positives = 94/177 (53%), Gaps = 15/177 (8%)

Query: 94  FISYNR-----ISQLSRIDCLSGLLNHSAFISSL-GSYN-------EKLSIVFFDIDYFK 140
           F+S NR     I   S  D L+   N  AF+S L G  N        +L+++F DIDYFK
Sbjct: 305 FVSMNRRLIKIIESNSLKDALTNTFNRRAFLSMLNGKQNVPAHKKKRQLTLLFLDIDYFK 364

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND +GH  GD++I   +  L         + R GGEEF  AA G + +++  +A  LR
Sbjct: 365 QVNDTYGHACGDELIVSFARMLSANIRPSDILCRWGGEEFIIAAYGLTVEQSEAVAEALR 424

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRV 255
           ++ E++ + +  G  IH TIS G+A     E   I  +I  AD+ LY AK  GRNRV
Sbjct: 425 RLTESTPLTLHDGREIHFTISIGVAIFSQYEGGNIYDLIGLADEQLYKAKTQGRNRV 481


>gi|119474824|ref|ZP_01615177.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [marine gamma proteobacterium
           HTCC2143]
 gi|119451027|gb|EAW32260.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [marine gamma proteobacterium
           HTCC2143]
          Length = 562

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 105/199 (52%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS- 124
           L+ VI+ + +S LL   +    S ++E  +   ++  L+  D L+ LLN   F +     
Sbjct: 351 LTFVIVLLAVSGLLAIFNRRLQSEIRERKLVEEKLETLAYTDPLTNLLNRRGFSTRYADE 410

Query: 125 ------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                 Y +  S++  D+D FK++ND +GH  GD+V+  ++D L+       F GR GGE
Sbjct: 411 LMRAQRYGDVFSVILIDLDLFKKVNDQYGHESGDRVLVSVADLLLKDTRETDFCGRFGGE 470

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EF      +S  EA + A  L + I ++ + + +G  + IT SAG+ E   ++     I 
Sbjct: 471 EFILLLPNTSLVEATVYARRLCQHIGDNNVRLQNGRLVTITASAGVTEWLSEDKGEATIR 530

Query: 239 RADQALYVAKKSGRNRVVC 257
           RADQALY AK +GRN+VV 
Sbjct: 531 RADQALYHAKNNGRNQVVA 549


>gi|326794921|ref|YP_004312741.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326545685|gb|ADZ90905.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 392

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/158 (39%), Positives = 93/158 (58%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLN-------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN       H     S  ++ + +S++FFDID+FK++ND +GH  GD  +A + 
Sbjct: 235 DELTGLLNRRYLEEIHQDVSESADAHKQPISVLFFDIDHFKRVNDEYGHQCGDITLAKVG 294

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           D +        F  R GGEEF    + S +QEA  +A +LR+ IENS IN+     IH+T
Sbjct: 295 DIVSNHTRVRDFSFRYGGEEF-VMIVRSDQQEAFAMAEELRQAIENSPINLGD-QYIHVT 352

Query: 220 ISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
           +S G+A R   +   I  +I +AD  +Y+AK++GRN+V
Sbjct: 353 VSIGVATRASNDVCSIKDVIAKADSLMYLAKQAGRNQV 390


>gi|170727329|ref|YP_001761355.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169812676|gb|ACA87260.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
          Length = 628

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/158 (39%), Positives = 94/158 (59%), Gaps = 5/158 (3%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           L+  D L+ L N     S    +    N KLS++ FD D+FK+INDNFGH +GDKV+  L
Sbjct: 464 LALTDHLTKLPNRRQTYSEAEKHFSNNNSKLSLILFDADHFKKINDNFGHEIGDKVLFEL 523

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           ++   ++      VGR+GGEEF      +S ++A  +AN L + I  + ++  S P++ I
Sbjct: 524 ANISNLMMRRADLVGRVGGEEFLIILPDTSLEQAIKIANRLVESIAKTDLSHLS-PTLSI 582

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++SAG+AE+      + ++ RAD ALY AK +GRNR V
Sbjct: 583 SVSAGVAEKEQDASFTELLNRADTALYQAKTNGRNRAV 620


>gi|149181516|ref|ZP_01860011.1| diguanylate cyclase (GGDEF domain) [Bacillus sp. SG-1]
 gi|148850766|gb|EDL64921.1| diguanylate cyclase (GGDEF domain) [Bacillus sp. SG-1]
          Length = 346

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 93/171 (54%), Gaps = 8/171 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNF 146
           +K+ +I    + +L+  D L+GL N      +L       +K+SI++ DID+FKQIND F
Sbjct: 179 VKQRYIKAEVMEELANTDYLTGLPNRRKIDQALHQALKKQQKISIIYLDIDHFKQINDTF 238

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+V+   +++ + V      +GR GGEEF    L +   EAAILA  +R  I   
Sbjct: 239 GHTAGDEVLKEFTNETLEVLKEENMLGRWGGEEF-MIILKNDLNEAAILAEKIRAHIAQH 297

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +          +T S G+      + + T++ RAD+ALY AK SGRN+VV 
Sbjct: 298 RFEAVGS----LTASFGVTALQEGDTLDTLLNRADKALYKAKNSGRNKVVS 344


>gi|153002545|ref|YP_001368226.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|151367163|gb|ABS10163.1| diguanylate cyclase [Shewanella baltica OS185]
          Length = 385

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 89/163 (54%), Gaps = 8/163 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
             +S L+  D L+GL N  AF+    S + S N  +S++  D+D FK+IND  GH VGD 
Sbjct: 219 KELSTLASQDSLTGLFNRRAFMHNATSIIASENFPVSVLMLDLDNFKKINDVHGHNVGDT 278

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+   +D L         +GR GGEEFAA    +  ++A  ++  LR  IE   +N    
Sbjct: 279 VLKLCADALQDGLKQYGIIGRFGGEEFAAILPRADSEQALAVSEKLRLAIETINVN---- 334

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           P I ++IS G+A       I  ++ RAD+ALY AK  GRN+V+
Sbjct: 335 PDIRLSISIGVATSSSVSSIEPLLIRADKALYEAKSKGRNQVI 377


>gi|295700242|ref|YP_003608135.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
 gi|295439455|gb|ADG18624.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
          Length = 402

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 93/166 (56%), Gaps = 8/166 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPV 150
            R+ +L+ ID L+G L   AFI+   +  E       KLSI   DID FK IND FGH  
Sbjct: 221 ERMERLATIDDLTGALGRRAFIARTEALFELAKVAKSKLSIAILDIDNFKSINDRFGHAA 280

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+ +A ++  +         +GR+GGEEFA     + ++EAA L N LR ++  S    
Sbjct: 281 GDQALAHVALTISRELRQTDVLGRIGGEEFALLMPLTGKEEAARLTNRLRTLVAASVARA 340

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +G  +  T+SAG+ E    + +++++ RAD ALY AK +GRN V+
Sbjct: 341 PTG-DVACTLSAGVDEFGDGDTVASVMARADTALYAAKANGRNCVM 385


>gi|116328680|ref|YP_798400.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116330663|ref|YP_800381.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116121424|gb|ABJ79467.1| Response regulator, GGDEF family [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124352|gb|ABJ75623.1| Response regulator, GGDEF family [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 352

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 102/182 (56%), Gaps = 9/182 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           S L  + +  +R+ +L+ +D ++GL  H  F + L    E+       L+++F D+D FK
Sbjct: 170 STLAGIAVENSRLYELATVDMMTGLKVHHYFQTKLKEEMERCRKKKSHLTLLFTDVDNFK 229

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           + ND  GH  GD+V+  ++ QL+   G      R GGEEF     G+  +    +   +R
Sbjct: 230 KFNDTHGHQAGDQVLIEVAKQLIRKAGKYDIPARYGGEEFCLIMPGADLERGYEMGETIR 289

Query: 201 KIIENSQI-NISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCF 258
           K +E S + N + GP + +T+S G++E   K+  +  +I R+D+ALY+AK SG+N+ +C+
Sbjct: 290 KAVEASSVKNPNGGPDLKVTLSVGVSEFWPKDKNNRDLIERSDKALYMAKHSGKNQTICY 349

Query: 259 SD 260
            +
Sbjct: 350 KE 351


>gi|332305797|ref|YP_004433648.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173126|gb|AEE22380.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 393

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 99/167 (59%), Gaps = 9/167 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-ISSLGSYN------EKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ + +  D LSG+ N  AF + S   +N      + LS++  D+D+FK +ND +GH  G
Sbjct: 226 KLQREANYDALSGIFNRRAFNLQSAQQFNKSRENDQPLSVLMCDVDFFKNVNDTYGHSTG 285

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+VI  ++  ++        V R GGEEF A    +S+ EA+I+A  +R+ IE+ +INI 
Sbjct: 286 DEVIKMVAQVMLENTRNSDLVARYGGEEFIALLPRTSKHEASIVAEKIRRSIESIEINID 345

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +  TIS GI++ +     I  +I RAD+ALY AK++GRN+V+ 
Sbjct: 346 NH-QLRFTISIGISDLKSADSNIDNVILRADEALYNAKEAGRNQVLM 391


>gi|27380072|ref|NP_771601.1| hypothetical protein bll4961 [Bradyrhizobium japonicum USDA 110]
 gi|27353226|dbj|BAC50226.1| bll4961 [Bradyrhizobium japonicum USDA 110]
          Length = 471

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 96/174 (55%), Gaps = 11/174 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
           ++ E  ++ +R +  +  D L+G+LN   F  + G   E+       ++++ FDID+FK 
Sbjct: 271 LVSERAVTAHRTA--ASTDPLTGMLNRRGFSEACGRVIEREAKAGRPVTVMIFDIDHFKS 328

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGHP GD+++   S  +V         GR+GGEEF AA L  S +E  ++A  +R+
Sbjct: 329 INDRFGHPAGDEMLKLFSTVVVSNLRITDMSGRIGGEEF-AALLPCSLEEGVLVAERVRE 387

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             E S + +  GP +  T+S G+A       +  ++  AD ALY AK+ GRNRV
Sbjct: 388 AFETSGVVVDEGP-VDTTVSIGVAGGPAGTELEVLLASADTALYQAKRGGRNRV 440


>gi|254458097|ref|ZP_05071523.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207084933|gb|EDZ62219.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 516

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 85/160 (53%), Gaps = 8/160 (5%)

Query: 104 SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S+ D L+ L N  A    +G        Y    S+V FD+D+FK +NDNFGH  GD V+ 
Sbjct: 355 SKEDFLTKLYNRRALDDFMGVKEAEFERYGHNFSVVMFDLDHFKSVNDNFGHEAGDAVLG 414

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             +  L     +   VGR GGEEF A    +  +  AI A  +RK +E ++  +  G  I
Sbjct: 415 AFAKILKKEARSVDVVGRFGGEEFMALLSETDTEGGAIFAEKVRKHVEKARF-MYKGERI 473

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +T+S GI+ER     +S +I  AD+ LY AKK GRN+V 
Sbjct: 474 EVTVSCGISERKKHTSLSNVINSADEYLYKAKKDGRNQVA 513


>gi|195952587|ref|YP_002120877.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932199|gb|ACG56899.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 772

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 90/157 (57%), Gaps = 11/157 (7%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N     + L  Y       +  LS++ FDID+FK IND+FGH VGDKV+  ++
Sbjct: 618 DPLTGIYNRRYLENKLEEYVKLAKRHDRPLSLIMFDIDFFKHINDSFGHDVGDKVLKAIA 677

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +           R GGEEF   A  +++++A ILA  LR +I N  ++   G  I++T
Sbjct: 678 KVVSENIRNTDIFARYGGEEFVIIAPETTKEDAKILAEKLRSLIRN--LHFEEG--INVT 733

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S G+A     +   T++ RAD+ALY AKK+GRN+VV
Sbjct: 734 CSFGVASLEKHDTKETLLKRADEALYEAKKTGRNKVV 770


>gi|39935542|ref|NP_947818.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009]
 gi|192291133|ref|YP_001991738.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
 gi|39649395|emb|CAE27917.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris
           CGA009]
 gi|192284882|gb|ACF01263.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
          Length = 355

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 97/179 (54%), Gaps = 9/179 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L +S + I   S  D L+GL N   F       I + G+  + LS++  DID+FK  ND 
Sbjct: 167 LQVSLDAIRAESLTDPLTGLGNRKHFDRTVQEAIRNAGASQQPLSLLMMDIDHFKSFNDT 226

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD+V+  +   L        F  R GGEEFA     +  ++A I+A+++R+++ +
Sbjct: 227 YGHLTGDQVLRLVGMTLKQSIKGQDFTARYGGEEFAVVLPNTPMRQAIIVADNIRRLVMS 286

Query: 206 SQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            ++   S   I   +T+SAG++     +    +I RAD  LY AK++GRNRV+C +D E
Sbjct: 287 KELKKKSTGEILGRVTLSAGVSTLKPNDDAEALIERADACLYAAKRNGRNRVICETDPE 345


>gi|303245949|ref|ZP_07332231.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           fructosovorans JJ]
 gi|302492732|gb|EFL52600.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           fructosovorans JJ]
          Length = 622

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 98/177 (55%), Gaps = 9/177 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL      +  L+  D L+G+ N   F+            Y +  +++  D+D+FK +ND
Sbjct: 446 ELERRVEELHLLATKDALTGISNRRHFLEQASMELVRAKRYGKPFALLMLDVDHFKAVND 505

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD+V+  L  +L     T   VGR+GGEEFAA  + +  + A  +A  LR+ + 
Sbjct: 506 THGHDVGDEVLRSLGAELQGTVRTSDHVGRIGGEEFAALIIEADIENAREVAERLRQKLY 565

Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +S I+  +GP +  T+S G+AE +   + +  ++ RAD ALY AK++GRNRV C+ +
Sbjct: 566 SSCIDTRTGP-VSYTVSIGLAEYQREDDSVDDMLRRADLALYHAKRNGRNRVCCYGE 621


>gi|154246138|ref|YP_001417096.1| diguanylate cyclase [Xanthobacter autotrophicus Py2]
 gi|154160223|gb|ABS67439.1| diguanylate cyclase [Xanthobacter autotrophicus Py2]
          Length = 496

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 93/174 (53%), Gaps = 7/174 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFK 140
           ++ +E  +  +R+++L+  D L  L N   FI       ++   Y   L ++  D D FK
Sbjct: 318 AMFEERRLLIDRLTRLASWDSLVELHNRRHFIERADREVAAAQRYGRDLVLLMLDADNFK 377

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD  +  +++    V       GR+GGEEFA     ++      LA  LR
Sbjct: 378 ELNDQYGHAAGDAALKMIAEACAAVARQTDVTGRIGGEEFAMLLPHATLDGGQALAERLR 437

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + IE + + I++G   H+T+S GIA    ++ +  ++  AD+ALY AK++GRNR
Sbjct: 438 RQIEATPVQIATGRPFHVTVSIGIARLGRRDGLDALMRAADRALYAAKRAGRNR 491


>gi|240137530|ref|YP_002962001.1| putative diguanylate cyclase; two GGDEF domains [Methylobacterium
           extorquens AM1]
 gi|240007498|gb|ACS38724.1| putative diguanylate cyclase; two GGDEF domains [Methylobacterium
           extorquens AM1]
          Length = 363

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 83/160 (51%), Gaps = 2/160 (1%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            Y  +++++R D L+G LN     +  G   E   I+  D+D+FK IND FGH  GD V+
Sbjct: 203 GYAAVARMARTDALTGALNRQGLAAETGGVTEA-GIIVADLDHFKAINDRFGHAAGDAVL 261

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              + +   +      + RLGGEEF     G        LA  LR+ +  S ++   G +
Sbjct: 262 RDFAARAAALLPEGGHLARLGGEEFGIVLPGRDHNATTYLAERLRRAVGGSPVSW-KGSA 320

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + IT+S G+A     E +S  + RAD+ALY AK  GRNRV
Sbjct: 321 VPITVSLGVAMLRAGEALSESLERADKALYDAKTDGRNRV 360


>gi|160877266|ref|YP_001556582.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160862788|gb|ABX51322.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|315269471|gb|ADT96324.1| diguanylate cyclase [Shewanella baltica OS678]
          Length = 385

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 89/163 (54%), Gaps = 8/163 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
             +S L+  D L+GL N  AF+    S + S N  +S++  D+D FK+IND  GH VGD 
Sbjct: 219 KELSTLASQDSLTGLFNRRAFMHNATSIIASENFPVSVLMLDLDNFKKINDVHGHNVGDT 278

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+   +D L         +GR GGEEFAA    +  ++A  ++  LR  IE   +N    
Sbjct: 279 VLKLCADALQDGLKQYGIIGRFGGEEFAAILPRADSEQALAVSEKLRLAIETINVN---- 334

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           P I ++IS G+A       I  ++ RAD+ALY AK  GRN+V+
Sbjct: 335 PDIRLSISIGVATSSSVSSIEPLLIRADKALYEAKSKGRNQVI 377


>gi|153828768|ref|ZP_01981435.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|148875721|gb|EDL73856.1| GGDEF family protein [Vibrio cholerae 623-39]
          Length = 976

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIN
Sbjct: 794 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIALLDIDHFKQIN 853

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D + H +GD+ I  +S +L+   G    V R GGEEF    +G  +Q        LR  I
Sbjct: 854 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPKQAWGYF-EKLRCKI 912

Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E  Q+++S+  P +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 913 E--QVDLSAVAPGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 964


>gi|254225352|ref|ZP_04918964.1| GGDEF family protein [Vibrio cholerae V51]
 gi|125622193|gb|EAZ50515.1| GGDEF family protein [Vibrio cholerae V51]
          Length = 976

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIN
Sbjct: 794 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIALLDIDHFKQIN 853

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D + H +GD+ I  +S +L+   G    V R GGEEF    +G  +Q        LR  I
Sbjct: 854 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPKQAWGYF-EKLRCKI 912

Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E  Q+++S+  P +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 913 E--QVDLSAVAPGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 964


>gi|262158980|ref|ZP_06030092.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|262169339|ref|ZP_06037031.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|262022152|gb|EEY40861.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|262029165|gb|EEY47817.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
          Length = 960

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIN
Sbjct: 778 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIALLDIDHFKQIN 837

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D + H +GD+ I  +S +L+   G    V R GGEEF    +G  +Q        LR  I
Sbjct: 838 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPKQAWGYF-EKLRCKI 896

Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E  Q+++S+  P +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 897 E--QVDLSAVAPGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 948


>gi|15641365|ref|NP_230997.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121591222|ref|ZP_01678523.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121728782|ref|ZP_01681796.1| GGDEF family protein [Vibrio cholerae V52]
 gi|147673928|ref|YP_001216913.1| GGDEF family protein [Vibrio cholerae O395]
 gi|153818345|ref|ZP_01971012.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|153822059|ref|ZP_01974726.1| GGDEF family protein [Vibrio cholerae B33]
 gi|227081524|ref|YP_002810075.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|254848475|ref|ZP_05237825.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|298498562|ref|ZP_07008369.1| GGDEF family protein [Vibrio cholerae MAK 757]
 gi|9655846|gb|AAF94511.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121546920|gb|EAX57071.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121628959|gb|EAX61412.1| GGDEF family protein [Vibrio cholerae V52]
 gi|126511092|gb|EAZ73686.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|126520392|gb|EAZ77615.1| GGDEF family protein [Vibrio cholerae B33]
 gi|146315811|gb|ABQ20350.1| GGDEF family protein [Vibrio cholerae O395]
 gi|227009412|gb|ACP05624.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|227013270|gb|ACP09480.1| GGDEF family protein [Vibrio cholerae O395]
 gi|254844180|gb|EET22594.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|297542895|gb|EFH78945.1| GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 976

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIN
Sbjct: 794 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIALLDIDHFKQIN 853

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D + H +GD+ I  +S +L+   G    V R GGEEF    +G  +Q        LR  I
Sbjct: 854 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPKQAWGYF-EKLRCKI 912

Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E  Q+++S+  P +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 913 E--QVDLSAVAPGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 964


>gi|163848602|ref|YP_001636646.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222526537|ref|YP_002571008.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus sp. Y-400-fl]
 gi|163669891|gb|ABY36257.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222450416|gb|ACM54682.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus sp. Y-400-fl]
          Length = 324

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/174 (37%), Positives = 96/174 (55%), Gaps = 9/174 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL  +  R ++L+R+D L+G+ N S F        +    Y   L++   D+D+FKQIN
Sbjct: 150 RELQRALAREAELARMDWLTGVYNRSHFYELARHEFAIATRYERPLTMCMLDVDHFKQIN 209

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGD+V+  ++  +     T   +GR GGEEF      ++   A  LA  LR  I
Sbjct: 210 DRYGHLVGDQVLRAVAQTVAHQIRTADSIGRFGGEEFILLLPNTNLPSALTLAERLRVTI 269

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            + Q++   G  +  TIS G+AER   +  I  +I RAD+ALY AK+ GRN VV
Sbjct: 270 ADLQVHTDRG-IVTATISVGVAERQSTDTTIERLIDRADRALYAAKRQGRNCVV 322


>gi|239937647|gb|ACS35620.1| putative GGDEF domain protein [Aeromonas sp. YS3]
          Length = 232

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/173 (38%), Positives = 93/173 (53%), Gaps = 18/173 (10%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFG 147
           + L  S   + +L+  D L+GL N  A +  LG    +   L+++  DID+FKQIND  G
Sbjct: 55  RRLHRSSRHLYKLATFDQLTGLPNRRALLERLGQQWLHETPLTLLIIDIDHFKQINDKHG 114

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI---LANDLRKIIE 204
           H  GD+ I  L+ +L         +GR GGEEF  A      Q+ A    LA  LR    
Sbjct: 115 HQAGDQAIRQLARELKSWAPDQQLIGRWGGEEFLVAMT----QDGATCWRLAEQLR---- 166

Query: 205 NSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S+I   + P  H+TIS G+AER    + +S +I+RAD A+Y AK+ GRN+ V
Sbjct: 167 -SRIAYLAAP--HMTISIGVAERSTQDDSLSQLIHRADMAMYQAKRQGRNQTV 216


>gi|327484024|gb|AEA78431.1| GGDEF family protein [Vibrio cholerae LMA3894-4]
          Length = 976

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIN
Sbjct: 794 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIAVLDIDHFKQIN 853

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D + H +GD+ I  +S +L+   G    V R GGEEF    +G  +Q        LR  I
Sbjct: 854 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPQQAWGYF-EKLRCKI 912

Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E  Q+++S+  P +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 913 E--QVDLSAVAPGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 964


>gi|149189896|ref|ZP_01868175.1| GGDEF family protein [Vibrio shilonii AK1]
 gi|148836211|gb|EDL53169.1| GGDEF family protein [Vibrio shilonii AK1]
          Length = 317

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 94/167 (56%), Gaps = 11/167 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNH----SAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S  ++++L R D L+GL N     S FI   +S+ +     ++V FDID+FK++NDN+GH
Sbjct: 148 SNEKLTELGRTDGLTGLFNRAYWESQFIEEFNSVQTTGRTSTLVMFDIDHFKRVNDNYGH 207

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD VI   + QL+         GR GGEEFA     ++  +A+  A  LRK +E   +
Sbjct: 208 ATGDNVIKETAQQLLKAARGSDVCGRYGGEEFAVLLTDTTADQASYFAERLRKRVEELCL 267

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRN 253
               G S+  TIS GI E C  E  + + +  RAD+ALY +K++GRN
Sbjct: 268 EF-DGQSLQYTISLGITE-CSAEDNNHVDWLKRADKALYQSKEAGRN 312


>gi|330971107|gb|EGH71173.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 358

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 113/216 (52%), Gaps = 12/216 (5%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
            L P   L   + +  + + + +T  + +G++S  +  +L+   N + ++SR D L+GLL
Sbjct: 134 ALDPVVNLHGNMAQIYACLPVLVTYPIFIGWLSHQVTLKLWEHRNILRKVSRTDSLTGLL 193

Query: 114 NHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           NH A        + SS  +Y E + I   DID+FK IND +GH +GD V+  +S+ L+  
Sbjct: 194 NHGAWKDLLDLEYASSQNAYQECV-IALIDIDHFKVINDTYGHLMGDTVLQSISEALIEN 252

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                 +GR GG+EF      +S  +A  +   LR  I+     +     + +++S GIA
Sbjct: 253 LRDSDLIGRCGGDEFCVILPDTSLLQAKEILERLRLAIDEMTYTLHC--DLKVSLSIGIA 310

Query: 226 ERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260
               + P  S+ ++ AD+ALY+AK +GRNRV    D
Sbjct: 311 AYSPEMPDASSWLHEADKALYLAKSTGRNRVASPQD 346


>gi|78358791|ref|YP_390240.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78221196|gb|ABB40545.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 436

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/192 (35%), Positives = 100/192 (52%), Gaps = 11/192 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
           V++S+   ++L     S++ E  +    + + +R D L+GL N  A        ++ L  
Sbjct: 230 VLVSLVFGIMLMMGVSSMINERLVQM--LEKEARTDPLTGLGNRRALYTAAAHHVARLHR 287

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
             E L I+  D+D FK +ND FGHP GD ++   +  L   F     + R GGEEF A  
Sbjct: 288 LCEPLVILVMDLDRFKSVNDKFGHPAGDALLRHFAAILQKQFRGTDQLFRFGGEEFVALL 347

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQA 243
             S E+ A  LA  LR+ +    + +  G SI +T+S GIA    +EP I+  + RADQA
Sbjct: 348 QPSDERGAVCLAERLRREVAACPLQL-GGASIAVTVSIGIANMLPEEPDITRALGRADQA 406

Query: 244 LYVAKKSGRNRV 255
           LY AK  GRNRV
Sbjct: 407 LYKAKAGGRNRV 418


>gi|310778304|ref|YP_003966637.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
 gi|309747627|gb|ADO82289.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
          Length = 465

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 85/161 (52%), Gaps = 11/161 (6%)

Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+ +D L+ L N       L         Y  K+S++  D+D+FK++NDNFGHP GD V+
Sbjct: 285 LATVDGLTKLWNRKTIEGRLREEFDRSQRYRSKMSVILLDVDHFKKVNDNFGHPTGDLVL 344

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +S+ L        F+GR GGEEF    + + ++    +A  LR+ IE+    + S   
Sbjct: 345 EKISEILKNTLRKTDFIGRWGGEEFIVVCVETDQRAVWKVAEKLRQEIEHYNFGLES--- 401

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +TIS G A     E +  I+ RAD  +Y AKK+GRN+ +
Sbjct: 402 -QVTISLGTATLDRGESLEDILKRADDNMYRAKKAGRNKTI 441


>gi|66046991|ref|YP_236832.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63257698|gb|AAY38794.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 358

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 113/216 (52%), Gaps = 12/216 (5%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
            L P   L   + +  + + + +T  + +G++S  +  +L+   N + ++SR D L+GLL
Sbjct: 134 ALDPVVNLHGNMAQIYACLPVLVTYPIFIGWLSHQVTLKLWEHRNILRKVSRTDSLTGLL 193

Query: 114 NHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           NH A        + SS  +Y E + I   DID+FK IND +GH +GD V+  +S+ L+  
Sbjct: 194 NHGAWKDLLDLEYASSQNAYQECV-IALIDIDHFKVINDTYGHLMGDTVLQSISEALIEN 252

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                 +GR GG+EF      +S  +A  +   LR  I+     +     + +++S GIA
Sbjct: 253 LRDSDLIGRCGGDEFCVILPDTSLLQAKEILERLRLAIDEMTYTLHC--DLKVSLSIGIA 310

Query: 226 ERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260
               + P  S+ ++ AD+ALY+AK +GRNRV    D
Sbjct: 311 AYSPEMPDASSWLHEADKALYLAKSTGRNRVASPQD 346


>gi|163851405|ref|YP_001639448.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|254561166|ref|YP_003068261.1| hypothetical protein METDI2743 [Methylobacterium extorquens DM4]
 gi|163663010|gb|ABY30377.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|254268444|emb|CAX24401.1| hypothetical protein METDI2743 [Methylobacterium extorquens DM4]
          Length = 298

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 91/167 (54%), Gaps = 12/167 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +L+  D L+GLLN  AF+       +K      L  V  DID+FK+IND  GH VGD  I
Sbjct: 131 RLAETDSLTGLLNRRAFLQRTREAAQKAGSFGHLCAVILDIDHFKRINDEHGHDVGDAAI 190

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  ++   G     GRLGGEEFA    G    EA  +A+ LR    + +I  + GP 
Sbjct: 191 KAVAG-MIEAEG---IAGRLGGEEFAVMLAGQRLTEAEAVASRLRLKTSDLRIRSTKGP- 245

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV-CFSDI 261
           + +T S G++E    E +  ++ RAD ALY AK +GRNRVV   SD+
Sbjct: 246 VRLTCSFGVSEWSEGETVEGLLKRADIALYEAKTTGRNRVVSAMSDL 292


>gi|295700884|ref|YP_003608777.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1002]
 gi|295440097|gb|ADG19266.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1002]
          Length = 428

 Score =  105 bits (263), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 91/158 (57%), Gaps = 12/158 (7%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL N   F   + +L + + KLSI   DIDYFK+IND+FGH +GD+V+  ++    
Sbjct: 271 DELTGLPNRREFADTVENLLASDSKLSIFLLDIDYFKKINDSFGHDIGDEVLRVMAK--- 327

Query: 164 VVFGTPMFVG---RLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQINISSGPSIHI 218
           VV      +G   R GGEEF AA  G   ++A  +A +LR+ IE  N +     G  I  
Sbjct: 328 VVMSADWRIGVFARWGGEEFVAALPGLDIEQATSVAENLRQTIEQQNFEHPWRLGKPIPF 387

Query: 219 TISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
           T+S G+ ER   E  +  I+ RAD ALY AK SGRNRV
Sbjct: 388 TVSIGVTERRPGENDVGAIVKRADLALYRAKDSGRNRV 425


>gi|189426365|ref|YP_001953542.1| diguanylate cyclase [Geobacter lovleyi SZ]
 gi|189422624|gb|ACD97022.1| diguanylate cyclase [Geobacter lovleyi SZ]
          Length = 307

 Score =  105 bits (263), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 106/191 (55%), Gaps = 11/191 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136
           YI+   + +  I  +++ Q++++D L+G+ N     + L    E+       LSI+  DI
Sbjct: 119 YITVQDVTDFVIYEHKLIQMAKVDGLTGVFNRRYLDTRLQEELERSRRHGNPLSIMMLDI 178

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND  GH  GD  +  +S+ L+ +  T   +GR GGEEF      +S ++A +LA
Sbjct: 179 DHFKEINDTHGHICGDYTLRKISELLLELVRTSDILGRYGGEEFCCILPETSFEQALVLA 238

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              R  +  SQ + +   S  +T+S G+ +    + + +II RAD ALY AK++GRNR V
Sbjct: 239 ERCRTQVAASQFSCTDHQS-RVTVSIGVTDLHRDDTLDSIIKRADDALYQAKRTGRNR-V 296

Query: 257 CFS--DIENNT 265
           C S   +EN T
Sbjct: 297 CSSPVPVENAT 307


>gi|219847926|ref|YP_002462359.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus aggregans DSM 9485]
 gi|219542185|gb|ACL23923.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus aggregans DSM 9485]
          Length = 312

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/174 (37%), Positives = 96/174 (55%), Gaps = 9/174 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL  +  R ++L+RID L+G+ N S F        +    Y++ L+I  FD+D+FK IN
Sbjct: 138 RELQRALAREAELARIDWLTGVYNRSHFYELATYEFAIATRYDQPLAICMFDVDHFKHIN 197

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH +GD+V+  ++        T   +GR GGEEF      ++ +    LA  LR  +
Sbjct: 198 DQYGHLIGDQVLRTIAQTAARQIRTADCIGRFGGEEFILLLPNTTMEAGLNLAERLRVAV 257

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
              +I+   G +I  TIS G+A R   +  I  II RADQALY AK+ GRN VV
Sbjct: 258 AALEIHTEKG-TITATISLGVAGRQPADTMIERIIDRADQALYAAKRQGRNCVV 310


>gi|77919891|ref|YP_357706.1| sensor histidine kinase/GGDEF domain-containing protein [Pelobacter
           carbinolicus DSM 2380]
 gi|77545974|gb|ABA89536.1| sensor histidine kinase/FOG: GGDEF domain protein [Pelobacter
           carbinolicus DSM 2380]
          Length = 422

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/173 (38%), Positives = 99/173 (57%), Gaps = 13/173 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIN 143
           KEL         L+R+D L+GL N  AF        + +  ++   SI+  DID+FK+IN
Sbjct: 244 KELETQKKIAENLARLDPLTGLSNRRAFFEYGLLLENQIARHHHHFSIIMLDIDHFKKIN 303

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH +GD+ +  L++ L  +  +   +GRLGGEEFA     +S +EAAI++  L+  I
Sbjct: 304 DCYGHEMGDEALKTLAEHLNAIVRSSDILGRLGGEEFAIIMPHASSEEAAIMSERLKTAI 363

Query: 204 ENSQINISSGPS-IHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRN 253
             S+I +S     I  T+S GIAE C+++  S   ++  AD+ALY AK  GRN
Sbjct: 364 --SKIVLSDNEQRIRFTVSFGIAE-CNEKITSFQQVLNNADKALYQAKNEGRN 413


>gi|183179352|ref|ZP_02957563.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|183012763|gb|EDT88063.1| GGDEF family protein [Vibrio cholerae MZO-3]
          Length = 976

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIN
Sbjct: 794 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIAVLDIDHFKQIN 853

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D + H +GD+ I  +S +L+   G    V R GGEEF    +G  +Q        LR  I
Sbjct: 854 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPKQAWGYF-EKLRCKI 912

Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E  Q+++S+  P +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 913 E--QVDLSAVAPGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 964


>gi|254286550|ref|ZP_04961506.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|150423308|gb|EDN15253.1| GGDEF family protein [Vibrio cholerae AM-19226]
          Length = 976

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIN
Sbjct: 794 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIAVLDIDHFKQIN 853

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D + H +GD+ I  +S +L+   G    V R GGEEF    +G  +Q        LR  I
Sbjct: 854 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPKQAWGYF-EKLRCKI 912

Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E  Q+++S+  P +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 913 E--QVDLSAVAPGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 964


>gi|153825257|ref|ZP_01977924.1| GGDEF family protein [Vibrio cholerae MZO-2]
 gi|149741085|gb|EDM55144.1| GGDEF family protein [Vibrio cholerae MZO-2]
          Length = 976

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIN
Sbjct: 794 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIAVLDIDHFKQIN 853

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D + H +GD+ I  +S +L+   G    V R GGEEF    +G  +Q        LR  I
Sbjct: 854 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPKQAWGYF-EKLRCKI 912

Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E  Q+++S+  P +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 913 E--QVDLSAVAPGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 964


>gi|15605636|ref|NP_213011.1| hypothetical protein aq_035 [Aquifex aeolicus VF5]
 gi|2982791|gb|AAC06416.1| hypothetical protein aq_035 [Aquifex aeolicus VF5]
          Length = 431

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 87/167 (52%), Gaps = 7/167 (4%)

Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +++  D L+GL N   F       ++    Y    SI+  DID FK+IND +GH VGD 
Sbjct: 261 ERMALTDPLTGLYNRRVFTEMAEKELAKAKRYGYNFSILMIDIDNFKKINDTYGHDVGDL 320

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  +S+ L         V R GGEEF      ++   A   A  LR++IE + I + +G
Sbjct: 321 VLKKISEILKRNVRGADLVARFGGEEFIVMLSNTNLNGAVKKAEQLRRMIEQTPIELPNG 380

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + +T+S G++     E +  +I  ADQALY AK+ G+NRV  F +
Sbjct: 381 EKLRVTVSIGVSTYRGHESLEELIKEADQALYEAKRKGKNRVEVFRE 427


>gi|209519573|ref|ZP_03268365.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. H160]
 gi|209499990|gb|EEA00054.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. H160]
          Length = 427

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/158 (42%), Positives = 88/158 (55%), Gaps = 12/158 (7%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL N   F   + +L   + KLSI   DIDYFK+IND++GH  GD+V+  L+    
Sbjct: 270 DELTGLPNRREFADTVENLLGTDSKLSIFILDIDYFKKINDSYGHDTGDEVLRVLAK--- 326

Query: 164 VVFGTPMFVG---RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN--ISSGPSIHI 218
           VV      +G   R GGEEF AA  G   ++A  +A+DLR  IE          G  I  
Sbjct: 327 VVMNADRRIGVFARWGGEEFVAALPGLDIEQATSIADDLRLTIEQQNFEHIWRLGKPIPF 386

Query: 219 TISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
           T+S G+ ER  +E  +  I+ RAD ALY AK +GRNRV
Sbjct: 387 TVSIGVTERQPRENDVGAIVKRADLALYRAKDNGRNRV 424


>gi|332799635|ref|YP_004461134.1| GAF sensor-containing diguanylate cyclase [Tepidanaerobacter sp.
           Re1]
 gi|332697370|gb|AEE91827.1| diguanylate cyclase with GAF sensor [Tepidanaerobacter sp. Re1]
          Length = 567

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 95/171 (55%), Gaps = 9/171 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHP 149
           ++  SQ++  D L+GL NH+   S +      +       S++  D+D+FK  ND +GH 
Sbjct: 389 FDETSQMAITDGLTGLYNHTYIYSEMERQMRGINNAGGIFSLIIIDVDHFKVYNDMYGHI 448

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD ++  L++ L         +GR GGEEFA    G    EA I+A  +RKI+E + + 
Sbjct: 449 VGDIILKNLAEVLKKNVRDKDIIGRYGGEEFAIILPGIPSLEAMIIAERIRKIVEKTALA 508

Query: 210 ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQA-LYVAKKSGRNRVVCF 258
                +I+ITISAGIA    +   +  ++ +ADQA L+ AKK GRNRVV F
Sbjct: 509 TVENENIYITISAGIAAYPTNAASVEDLVDKADQAMLFGAKKEGRNRVVIF 559


>gi|253686941|ref|YP_003016131.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251753519|gb|ACT11595.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 489

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 96/185 (51%), Gaps = 16/185 (8%)

Query: 94  FISYNR-----ISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFK 140
           F+S NR     I   S  D L+   N  AF+S L             +L+++F DIDYFK
Sbjct: 305 FVSMNRRLIKIIESNSLKDALTNTFNRRAFLSMLNGRQGLLMNKRKRQLTLLFLDIDYFK 364

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND +GH  GD++IA  +  L         + R GGEEF  AA   + +++A +A  LR
Sbjct: 365 QVNDTYGHASGDELIASFARMLSANIRPSDILCRWGGEEFVIAAYDLTAEQSAAMAETLR 424

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCF 258
            + E++ + +S G  I  TIS G+      E  +T  +I  AD+ LY AK  GRNR VC 
Sbjct: 425 HLTESTPLVLSDGREIRFTISIGVVTFPQYEGGNTYDLIGLADEQLYKAKAQGRNR-VCL 483

Query: 259 SDIEN 263
             +E+
Sbjct: 484 RLVED 488


>gi|254507955|ref|ZP_05120083.1| ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219549063|gb|EED26060.1| ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 323

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 95/167 (56%), Gaps = 7/167 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKV 154
           + QL+  D L+G+ N  A + +   Y+ +     LS++  D+DYFKQ+ND +GH VGDKV
Sbjct: 153 LGQLASRDSLTGVYNRHALVHNFNRYHNESAKVPLSLLILDLDYFKQVNDQYGHDVGDKV 212

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   +  L+        V R+GGEEF  A   S+ Q A   A  +R+ IE    + +  P
Sbjct: 213 LV-ETAALLDALCDEHLVYRIGGEEFCIALHNSNLQHAKYKAELIRQAIEQYSFSGAEAP 271

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            I +T+S G+ E  H + + +++  AD+ LY AKK+GRN+V+   ++
Sbjct: 272 -IKLTVSIGVYECHHFDSLESVLKEADKELYKAKKNGRNQVMVSQEV 317


>gi|311235013|gb|ADP87867.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris
           RCH1]
          Length = 572

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 93/167 (55%), Gaps = 9/167 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGD 152
           + +++ +D L+G+ N + F+ +L    ++        S++  D+D FK +ND +GH VGD
Sbjct: 389 LRRMASMDALTGVSNRATFMETLADMMQRCCHDRAVASVLVMDVDNFKLVNDTWGHAVGD 448

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI--NI 210
           +V+  L   +V +  T   VGRLGGEEF     G   + A  +A  LR  I   ++  + 
Sbjct: 449 EVLRRLGRAMVPLLRTVDTVGRLGGEEFGVLLPGVGPEAACCVAERLRAAIAAMEVPCDD 508

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             G ++ +T+S G+A       ++ ++  AD+ALY AK SGR+RVVC
Sbjct: 509 GRGEALRVTVSVGVASCPPYHSVTEVLRAADKALYRAKASGRDRVVC 555


>gi|239831922|ref|ZP_04680251.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239824189|gb|EEQ95757.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 275

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 120/254 (47%), Gaps = 20/254 (7%)

Query: 12  WLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL 71
           W C      +      +    + FS+   +++       F  G TP      I+  +LS 
Sbjct: 8   WECEGMKKTALVKAALITLSVVAFSLGATSIV------AFSAGATP-----GIIALSLSA 56

Query: 72  VIISITISLLLGYI--SGSILKELFISYNR----ISQLSRIDCLSGLLNHSAFISSLG-- 123
            I + T    L YI      LK+ ++   R    +   SRID ++GLLN  A   ++   
Sbjct: 57  GIPAATAFPSLAYIFHQHGKLKDAYLQLERAHVELQARSRIDHMTGLLNREALFEAMKIS 116

Query: 124 -SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
            S  E  +++  D D+FK IND FGH VGD+ +  ++  L  V      VGR+GGEEF  
Sbjct: 117 RSRIETGTLLVIDADHFKAINDTFGHGVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCV 176

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
              G+S +    +A  +R  +EN+  + +      +TIS G+A     E  S ++ RAD+
Sbjct: 177 FLPGASGETGMRVAQRIRAEVENTPFHTTEYQVYPLTISIGVASAPKNETNSQVLSRADR 236

Query: 243 ALYVAKKSGRNRVV 256
            LY+AK+ GRN VV
Sbjct: 237 CLYMAKQRGRNCVV 250


>gi|120601468|ref|YP_965868.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris
           DP4]
 gi|120561697|gb|ABM27441.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris
           DP4]
          Length = 572

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 93/167 (55%), Gaps = 9/167 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGD 152
           + +++ +D L+G+ N + F+ +L    ++        S++  D+D FK +ND +GH VGD
Sbjct: 389 LRRMASMDALTGVSNRATFMETLADMMQRCCHDRAVASVLVMDVDNFKLVNDTWGHAVGD 448

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI--NI 210
           +V+  L   +V +  T   VGRLGGEEF     G   + A  +A  LR  I   ++  + 
Sbjct: 449 EVLRRLGRAMVPLLRTVDTVGRLGGEEFGVLLPGVGPEAACCVAERLRAAIAAMEVPCDD 508

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             G ++ +T+S G+A       ++ ++  AD+ALY AK SGR+RVVC
Sbjct: 509 GRGEALRVTVSVGVASCPPYHSVTEVLRAADKALYRAKASGRDRVVC 555


>gi|37681146|ref|NP_935755.1| hypothetical protein VV2962 [Vibrio vulnificus YJ016]
 gi|37199897|dbj|BAC95726.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 479

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 90/167 (53%), Gaps = 11/167 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+G  N  +F       I +   +N  LSI+  DID+FKQ ND++GH  GD
Sbjct: 307 LRNLAATDPLTGAFNRRSFMEQAEKSIRTCQRWNCPLSIMILDIDHFKQFNDSYGHAAGD 366

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  L     +       +GRLGGEEFA    G  E+EA  +A  LR ++EN Q+N   
Sbjct: 367 LVLVELVKMADLSTREIDIIGRLGGEEFAVVLPGLGEKEAFEVAKRLRSVVENMQVNYEQ 426

Query: 213 GPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVV 256
            P + +TIS G+A     E   P+  ++ +AD+ LY AK  GRN V+
Sbjct: 427 QP-LQMTISIGVATLQPSELNTPLEQLMKQADEGLYYAKAHGRNCVI 472


>gi|315126888|ref|YP_004068891.1| sensory box/GGDEF protein [Pseudoalteromonas sp. SM9913]
 gi|315015402|gb|ADT68740.1| sensory box/GGDEF protein [Pseudoalteromonas sp. SM9913]
          Length = 323

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 65/186 (34%), Positives = 101/186 (54%), Gaps = 17/186 (9%)

Query: 91  KELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKL-SIVFFDIDYFKQ 141
           KEL     ++ Q+S+ D L+ L N        H  F+ +    NE   S++ FDID+FK+
Sbjct: 142 KELEELNKKLEQVSQTDSLTQLANRGHWEHLLHQEFLRT--KRNEGCCSLLIFDIDHFKK 199

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND+FGH  GD+ +  ++  L          GR GGEEF    L + +Q A + A  LR+
Sbjct: 200 VNDDFGHSAGDEALRHIASLLKTALRETDIAGRYGGEEFVVTLLDTDKQGAIVFAERLRQ 259

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCF 258
           +IE S    +   ++H+ IS GIA  C  +        I  AD+ALY +K++GRN+V  +
Sbjct: 260 LIETSPAKYNEH-TVHMAISVGIA--CFDDQFKDHERWIEAADKALYHSKETGRNKVSVY 316

Query: 259 SDIENN 264
           +DI+N+
Sbjct: 317 ADIKND 322


>gi|326201287|ref|ZP_08191159.1| diguanylate cyclase [Clostridium papyrosolvens DSM 2782]
 gi|325988855|gb|EGD49679.1| diguanylate cyclase [Clostridium papyrosolvens DSM 2782]
          Length = 362

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/196 (37%), Positives = 105/196 (53%), Gaps = 13/196 (6%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121
           L  VI+S T+   + Y     L  + + + ++ + S  D L+GL N   F       I  
Sbjct: 167 LGTVIVSYTVYKYMIY-----LNNMSLLFRKLKEESTKDYLTGLNNVREFNKLFRLVIEK 221

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             S N+K S++  DID+FK IND  GH  GDKV+  +   L     T   + R GGEEF+
Sbjct: 222 AVSNNQKFSLLLIDIDFFKNINDTHGHQSGDKVLKEIGKILKQNCRTDDNISRNGGEEFS 281

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRA 240
                +S   A  +A  +RKII +++  +SSG  I++TIS GI+        I+ II RA
Sbjct: 282 ILLENASNSMAIEIAERIRKIIADNEFEVSSGRKINVTISIGISSYPETVTDITQIIERA 341

Query: 241 DQALYVAKKSGRNRVV 256
           D+ALY AK++GRN VV
Sbjct: 342 DEALYKAKRNGRNLVV 357


>gi|330896910|gb|EGH28492.1| GGDEF domain-containing protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 350

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 112/218 (51%), Gaps = 12/218 (5%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
            L P   L   + +  + + + +T  + +G++S  +  +L+   N + ++SR D L+GLL
Sbjct: 126 ALDPVVNLHGNMAQIYACLPVLVTYPIFIGWLSHQVTLKLWEHRNILRKVSRTDSLTGLL 185

Query: 114 NHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           NH A        + SS  +Y E + I   DID+FK IND +GH +GD V+  +S+ L   
Sbjct: 186 NHGAWKDLLDLEYTSSQNAYQECV-IALIDIDHFKVINDTYGHLMGDTVLQSISEALTEN 244

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                 +GR GG+EF      +   +A  +   LR  I+     +     + +++S GIA
Sbjct: 245 LRDSDLIGRCGGDEFCVILPDTCLLQAKEILERLRLAIDEMTYTLHC--DLKVSLSIGIA 302

Query: 226 ERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
               + P  S+ ++ AD+ALY+AK +GRNRV    D +
Sbjct: 303 AYSPEMPDASSWLHEADKALYLAKSTGRNRVASHQDAQ 340


>gi|27364806|ref|NP_760334.1| GGDEF domain-containing protein [Vibrio vulnificus CMCP6]
 gi|27360951|gb|AAO09861.1| FOG: GGDEF domain protein [Vibrio vulnificus CMCP6]
          Length = 479

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 90/167 (53%), Gaps = 11/167 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+G  N  +F       I +   +N  LSI+  DID+FKQ ND++GH  GD
Sbjct: 307 LRNLAATDPLTGAFNRRSFMEQAEKSIRTCQRWNCPLSIMILDIDHFKQFNDSYGHAAGD 366

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  L     +       +GRLGGEEFA    G  E+EA  +A  LR ++EN Q+N   
Sbjct: 367 LVLVELVKMADLSTREIDIIGRLGGEEFAVVLPGLGEKEAFEVAKRLRSVVENMQVNYEQ 426

Query: 213 GPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVV 256
            P + +TIS G+A     E   P+  ++ +AD+ LY AK  GRN V+
Sbjct: 427 QP-LQMTISIGVATLQPSELNTPLEQLMKQADEGLYYAKAHGRNCVI 472


>gi|86750660|ref|YP_487156.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
 gi|86573688|gb|ABD08245.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
          Length = 381

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 100/180 (55%), Gaps = 13/180 (7%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEK----LSIVFFDI 136
           Y  G  L+E   +Y RI +L+ +D L+G  N    +  L    +  E+    LS+   D+
Sbjct: 204 YKRGLQLRE---AYRRIEELAELDELTGAFNRRCIMRMLDDEIARAERSATPLSLALIDL 260

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND+FGHP GD+V+   +  +     +    GR GGEEF      +S ++A  L 
Sbjct: 261 DWFKRINDSFGHPTGDEVLRTFAITIFANIRSFDRFGRYGGEEFLLLLPNTSREDAHALL 320

Query: 197 NDLRKIIENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + LR+I+   +++ ++  P + +T+SAG+      E   +++ RAD ALY AK+ GRNR+
Sbjct: 321 DRLREIV--GELDWTAFSPGMRVTLSAGVTTMSPDETAESVLARADSALYAAKEKGRNRI 378


>gi|331270164|ref|YP_004396656.1| GGDEF domain-containing protein [Clostridium botulinum BKT015925]
 gi|329126714|gb|AEB76659.1| GGDEF domain protein, putative [Clostridium botulinum BKT015925]
          Length = 1816

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 60/130 (46%), Positives = 77/130 (59%), Gaps = 4/130 (3%)

Query: 126  NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            N+K SI+ FD+D+FK IND FGH VGDKV+  + + ++         GR GGEEF A   
Sbjct: 1508 NDKFSIIMFDLDHFKNINDTFGHQVGDKVLHSVCNTVMHNLRGEDICGRYGGEEFIAVLP 1567

Query: 186  GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQAL 244
            G   +EA  +A  +R  IE S+I    G    ITISAGIA   C  +    +I +ADQAL
Sbjct: 1568 GVDNKEALKIAERIRMAIEESKI---IGDETLITISAGIATYPCQAQLKRELIEKADQAL 1624

Query: 245  YVAKKSGRNR 254
            Y+AK  GRNR
Sbjct: 1625 YMAKDLGRNR 1634


>gi|325293462|ref|YP_004279326.1| diguanylate cyclase [Agrobacterium sp. H13-3]
 gi|325061315|gb|ADY65006.1| diguanylate cyclase [Agrobacterium sp. H13-3]
          Length = 280

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 99/182 (54%), Gaps = 2/182 (1%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVF 133
           IS T+  L+ +++   ++ L  S+ R +QLS+ D L+GL N     S+    +    + F
Sbjct: 88  ISFTVGFLICWLNARQMQLLIQSHERFAQLSQTDALTGLHNRLGLYSNCVHLSTPYCVAF 147

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK +ND +GH  GD VI+ ++  +   F     V R+GGEEF      + ++   
Sbjct: 148 IDIDHFKSVNDRYGHLAGDMVISSVAKTIREGFDEAAHVARMGGEEFVVVHTLAPDRFLE 207

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            L   +R+ I  + ++      I  TIS G+A R ++E    +++ AD ALY AK+SGRN
Sbjct: 208 -LCEGVREKIATTTVHFQD-LQISTTISIGVALRGNREIFEKVMHSADMALYEAKRSGRN 265

Query: 254 RV 255
           R+
Sbjct: 266 RI 267


>gi|157370758|ref|YP_001478747.1| diguanylate cyclase [Serratia proteamaculans 568]
 gi|157322522|gb|ABV41619.1| diguanylate cyclase [Serratia proteamaculans 568]
          Length = 500

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 126/247 (51%), Gaps = 21/247 (8%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           P   +++ ++ FS+F +T+I +  +++ +  L    GL   +  NL + ++  T+S+ LG
Sbjct: 247 PMPILLWLAMSFSLF-STMIAVL-VYVLWCHLAIDLGL---ITTNLDMKMLQNTVSMRLG 301

Query: 84  YISGSILKELFISYN--------RISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSI 131
               ++      S N        R+  ++  D L+ +L  SAF+      +    E++ I
Sbjct: 302 VALLALGPIAVASMNFARNALLQRLEHVANHDALTHVLTRSAFMQRGTRLVSQKGERICI 361

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DIDYFK IND FGH  GD  +   +  +          GR+GGEEFA  A  + +Q+
Sbjct: 362 MMLDIDYFKSINDRFGHAGGDAALLSFTRAITGDLRDNDLFGRMGGEEFAIVAPIAQQQD 421

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAK 248
           A  LA  LR  +E   IN+ +G ++ IT+S G+   C     + +  ++  AD A+Y AK
Sbjct: 422 ALSLAERLRHRVEIESINMPAGAALQITVSIGMVT-CIGGSGQNLDNLLKIADLAVYKAK 480

Query: 249 KSGRNRV 255
            SGRNRV
Sbjct: 481 NSGRNRV 487


>gi|330957612|gb|EGH57872.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 358

 Score =  105 bits (261), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 102/187 (54%), Gaps = 10/187 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           +G++S  +  +L+   N + +LSR D L+GLLNH A+   L        S + +  I   
Sbjct: 162 VGWLSHQVTLKLWEHRNILRKLSRTDSLTGLLNHGAWKDLLDLEFAKSRSLHRQCVIALI 221

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK IND +GH VGD V+  +S+ LV        +GR GG+EF      +S ++A  
Sbjct: 222 DIDHFKIINDTYGHLVGDTVLQNISEALVENLRDTDLIGRCGGDEFCVILPDTSSRQAEE 281

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           +   LR+ I+  +   +    + +++S GIA    +    ST ++ AD+ALY AK +GRN
Sbjct: 282 ILERLRQAID--EFTYALHCELRVSLSIGIAVYTPELTDASTWLHEADKALYFAKSTGRN 339

Query: 254 RVVCFSD 260
           RVV   D
Sbjct: 340 RVVNAQD 346


>gi|330809202|ref|YP_004353664.1| diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377310|gb|AEA68660.1| putative diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 317

 Score =  105 bits (261), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 91/167 (54%), Gaps = 9/167 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ +LS  D L+GL N   + ++L +       Y   LS+V  DID+FK++ND +GH  G
Sbjct: 150 QLQKLSSTDRLTGLYNRGHWEANLKAAYARHQRYGHALSLVMLDIDHFKRVNDTYGHQAG 209

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DKVI  ++  L          GR GGEEF      + +  A I A  LRK +E  +++ +
Sbjct: 210 DKVIEHVAGLLREHVRDADVAGRYGGEEFGVVLSDTDKAGAQIFAERLRKAVETLEVHYN 269

Query: 212 SGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
              +I  TIS G+A+        + +I RAD+ALY +KKSGRNRV  
Sbjct: 270 D-QAIRFTISLGVADLSQPSNDHADLIARADEALYTSKKSGRNRVTV 315


>gi|296274238|ref|YP_003656869.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
 gi|296098412|gb|ADG94362.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
          Length = 348

 Score =  105 bits (261), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 65/174 (37%), Positives = 89/174 (51%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           KEL IS  ++ +L+  D L+ LLN           I+    +N    ++  DID+FK  N
Sbjct: 178 KELEISNKKLEKLASTDVLTKLLNRGKLNDFLESEINRASRFNHIFGVIIMDIDHFKSTN 237

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGDKV+   +  L         VGR GGEEF      +  +    LA +LR II
Sbjct: 238 DIYGHNVGDKVLEEFATILKTKTRVTDIVGRWGGEEFVIICPQTDIEGIKKLAEELRYII 297

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           EN+  +I        T S GI   C  + I ++I RAD+ALY AK+ GRN+VV 
Sbjct: 298 ENNSFSIVGNK----TASFGITLYCEGDTIKSLISRADKALYRAKEEGRNKVVV 347


>gi|254560002|ref|YP_003067097.1| diguanylate cyclase [Methylobacterium extorquens DM4]
 gi|254267280|emb|CAX23112.1| putative diguanylate cyclase; two GGDEF domains [Methylobacterium
           extorquens DM4]
          Length = 363

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 83/160 (51%), Gaps = 2/160 (1%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +Y  +++++R D L+G LN     +  G   E   I+  D+D+FK IND FGH  GD V+
Sbjct: 203 AYAAVARMARTDALTGALNRQGLAAETGGVTEA-GIIVADLDHFKAINDRFGHAAGDAVL 261

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              + +   +      + RLGGEEF     G        LA  LR+ +  + +    G +
Sbjct: 262 RDFAARAAALLPEGGHLARLGGEEFGIVLPGHDHNATTYLAERLRRAVGGAPVPW-KGSA 320

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + IT+S G+A     E +S  + RAD+ALY AK  GRNRV
Sbjct: 321 VPITVSLGVAMLRTGEALSESLERADKALYDAKTDGRNRV 360


>gi|150019511|ref|YP_001311765.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052]
 gi|149905976|gb|ABR36809.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052]
          Length = 356

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 69/195 (35%), Positives = 108/195 (55%), Gaps = 13/195 (6%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121
           +S++++S  +   L YIS +   ++   Y ++   SR D L+GL N  AF       I +
Sbjct: 166 ISIIMVSTVVYYELNYISKT--NKM---YKKLKFDSRKDFLTGLNNVRAFNGLLDKTIRN 220

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                E LSI+  DID+FK IND +GH  GD V+  LS  L+    T   + R GGEEF 
Sbjct: 221 TLQKKENLSILMIDIDFFKHINDTYGHHSGDLVLKQLSKLLIDSCRTFDIISRNGGEEFT 280

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRA 240
           A  L  + + A  +A  +RK +E +   + +  +  IT+S GI+      + I+T++ +A
Sbjct: 281 AVLLDCNYKHAVDIAEKIRKNVECNTFKLDNNATAKITVSIGISSYPDITKNINTLLSKA 340

Query: 241 DQALYVAKKSGRNRV 255
           D ALY+AK++GRN+V
Sbjct: 341 DNALYLAKRTGRNKV 355


>gi|213851901|ref|ZP_03381433.1| hypothetical protein SentesT_02792 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 269

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 131/267 (49%), Gaps = 30/267 (11%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGL-------TPFYGLEYILVE---- 67
           + S+  + F++++ + F+  ++ ++ +  +   Y  L        P + L  +L      
Sbjct: 3   MWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLW-LTALLASVQLN 61

Query: 68  ---NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDCLSGLLN 114
              N+  +++ +T++ +L Y   I      E ++ Y        R+  ++  D L+G  N
Sbjct: 62  QYVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTAN 121

Query: 115 HSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM- 170
             +  S LG      E  +++  D+DYFK  NDN+GH  GD  +A ++  +     TP  
Sbjct: 122 RRSMESFLGDALRQTEPFALIMLDVDYFKNYNDNYGHQAGDACLAKVACVVKRSIRTPAD 181

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCH 229
            V R GGEEF      SS  EAA++A  ++  + E +  +++S  S  +T+S GI     
Sbjct: 182 LVARYGGEEFVVVLPSSSLNEAALVAKRIQTNLRETALPHVASAVSETVTVSMGITLSTA 241

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV 256
            + ++ II RAD+ALY AK+ GRNR V
Sbjct: 242 GDTVTGIIARADEALYRAKQQGRNRWV 268


>gi|119776269|ref|YP_929009.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119768769|gb|ABM01340.1| diguanylate cyclase [Shewanella amazonensis SB2B]
          Length = 319

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 114/223 (51%), Gaps = 23/223 (10%)

Query: 57  PFYGLEYILVENLSLV-IISIT-----ISLLLGYISGSILKELFI--SYNRISQLSRIDC 108
           P  G    + +N++L+ + S+T     IS+++  ++   + +L +  +  R+  LS+ D 
Sbjct: 101 PITGRAEFMYQNVTLLPLASLTGQITHISIIVYDVTDVAVNKLQLKNANERLEHLSQTDG 160

Query: 109 LSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ L N   +   +         Y + +S+V FDID FKQ+ND  GH  GDKVI  ++  
Sbjct: 161 LTQLHNRRHWQECMNREYERFNRYGDPVSLVMFDIDRFKQVNDEHGHVAGDKVIQHIAHL 220

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L          GR GGEEFA    G++ +EA      LR+ + +S I    G SI +TIS
Sbjct: 221 LSQSLRETDCAGRYGGEEFAVVLTGTTAEEAYHFTERLREKVASSAIQF-GGKSIQVTIS 279

Query: 222 AGIAERCHKEPI----STIIYRADQALYVAKKSGRNRVVCFSD 260
            GI   C  +      S  +  ADQALY AK+ GRNR V +S+
Sbjct: 280 LGI---CGMDDFVDNESQWLACADQALYQAKQQGRNRTVIYSE 319


>gi|163850469|ref|YP_001638512.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163662074|gb|ABY29441.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 363

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 2/160 (1%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            Y  +++++R D L+G LN     +  G   E   I+  D+D+FK IND FGH  GD V+
Sbjct: 203 GYAAVARMARTDALTGALNRQGLAAETGGVTEA-GIIVADLDHFKAINDRFGHAAGDAVL 261

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              + +   +      + RLGGEEF     G        LA  LR+ +  + +    G +
Sbjct: 262 RDFAARAAALLPEGGHLARLGGEEFGIVLPGRDHNATTYLAERLRRAVGGAPVAW-KGSA 320

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + IT+S G+A     E +S  + RAD+ALY AK  GRNRV
Sbjct: 321 VPITVSLGVAMLRAGEALSESLERADKALYDAKTDGRNRV 360


>gi|240138569|ref|YP_002963041.1| hypothetical protein MexAM1_META1p1954 [Methylobacterium extorquens
           AM1]
 gi|240008538|gb|ACS39764.1| hypothetical protein MexAM1_META1p1954 [Methylobacterium extorquens
           AM1]
          Length = 298

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 14/168 (8%)

Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GLLN  AF+          GS+   L  V  DID+FK+IND  GH VGD  
Sbjct: 131 RLAETDSLTGLLNRRAFLQRTREAAQMAGSFGH-LCAVILDIDHFKRINDEHGHDVGDAA 189

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           I  ++  ++   G     GRLGGEEFA    G    EA  +A+ LR    + +I  + GP
Sbjct: 190 IKAVAG-MIEAEG---IAGRLGGEEFAVMLAGQRLTEAEAVASRLRLKTSDLRIRSTKGP 245

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV-CFSDI 261
            + +T S G++E    E +  ++ RAD ALY AK +GRNRVV   SD+
Sbjct: 246 -VRLTCSFGVSEWSEGETVEGLLKRADIALYEAKTTGRNRVVSAMSDL 292


>gi|254521746|ref|ZP_05133801.1| diguanylate cyclase [Stenotrophomonas sp. SKA14]
 gi|219719337|gb|EED37862.1| diguanylate cyclase [Stenotrophomonas sp. SKA14]
          Length = 479

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 104/190 (54%), Gaps = 19/190 (10%)

Query: 78  ISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128
           +  LLGY   S+L ++ I   R  +  L+R D L+GL N  +F  SLG+ + +       
Sbjct: 276 LGALLGYALRSVLSQVDIQRQRDELETLARRDALTGLGNRRSFDESLGAAHRRARRQGLG 335

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAALG 186
           L+++  DID+FK++ND +GHP GD+ +  ++  L   +  G  +   R GGEEF AA   
Sbjct: 336 LAVLMIDIDHFKRLNDTYGHPEGDRRLRAVAAILDGCLQRGDDLLA-RYGGEEFIAALPS 394

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQA 243
           +    A  L   LR  +E++ +  + G    +TIS G+A +     +EP S ++  ADQA
Sbjct: 395 AEATHALELGERLRAAVESAALPAADG---QVTISVGVAWQAAGDEREP-SDLVAHADQA 450

Query: 244 LYVAKKSGRN 253
           LY AK+ GRN
Sbjct: 451 LYRAKRGGRN 460


>gi|251788333|ref|YP_003003054.1| diguanylate cyclase [Dickeya zeae Ech1591]
 gi|247536954|gb|ACT05575.1| diguanylate cyclase [Dickeya zeae Ech1591]
          Length = 536

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 90/164 (54%), Gaps = 7/164 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           R+S  +  D LSG+LN    + S+    G Y +K+S++  DID+FK IND+FGH +GD+V
Sbjct: 363 RLSSEAHTDPLSGMLNRRGMLESMEEVRGEY-KKVSVIAIDIDHFKVINDSFGHDMGDEV 421

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           I  LS Q+   F     V R+GGEEF     G+    A ++A  LR  + N+ I +    
Sbjct: 422 IRKLSQQIRKNFRKTDLVCRIGGEEFLILLPGADIHVATVIAERLRNNVANT-IYMPGSQ 480

Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +TIS G+      K  +   I  AD ALY AK SGRN+VV 
Sbjct: 481 HHQVTISVGVTTFNPQKSTLDVAIKTADNALYKAKNSGRNQVVV 524


>gi|89093154|ref|ZP_01166104.1| GGDEF family protein [Oceanospirillum sp. MED92]
 gi|89082450|gb|EAR61672.1| GGDEF family protein [Oceanospirillum sp. MED92]
          Length = 344

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 94/170 (55%), Gaps = 8/170 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-----NE-KLSIVFFDIDYFKQINDNFGHPVG 151
           N+  Q +R+D L+ L N  AF + L        +E   S+V  DID+FK+ ND +GH +G
Sbjct: 173 NKTRQDARVDPLTNLFNRRAFDAELAQVVGLNGSEFTSSLVLVDIDHFKKFNDTYGHLMG 232

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DKV+ ++   L  +   PM   R GGEEFA    G+S+++A  +A  +R  I+  +I   
Sbjct: 233 DKVLQYVGKLLKDICLEPMLPVRFGGEEFAVLMPGTSKEQAFEIAEKVRLKIQAIRIKQK 292

Query: 212 SGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I   IT S G+++    E +  +I R DQALY AK +GRN+VV  S
Sbjct: 293 KSGDIISSITASFGVSQLTDAETVEQLIERTDQALYQAKNNGRNQVVISS 342


>gi|146344104|ref|YP_001201960.1| two-component response regulator [Pseudomonas fluorescens SBW25]
 gi|146187916|emb|CAM96245.1| putative two-component response regulator with GGDEF and response
           regulator domains [Pseudomonas fluorescens SBW25]
          Length = 519

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/176 (38%), Positives = 91/176 (51%), Gaps = 12/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI----VFFDIDYFKQINDN 145
           LK L           R D L+GLLNH   ++S    +   S+    V  DID+FKQ+ND 
Sbjct: 342 LKALISRSKAFDSRMRRDPLTGLLNHGQLMASASRVSASGSVPNTMVMIDIDHFKQVNDT 401

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGHPVGDKV+  L++ L     +  F+GR+GGEEFA   +G+   +A  + + +R+I  N
Sbjct: 402 FGHPVGDKVLVGLAEVLSDNLRSTDFIGRMGGEEFAVLMVGAPMSDARNVIDRIREIFSN 461

Query: 206 SQINI------SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            Q          SG     T SAG+A       +S  +  AD ALY AK  GRNRV
Sbjct: 462 LQFETGLQDQGESGKWFACTFSAGVALLDGSAAVS--MKAADHALYKAKHGGRNRV 515


>gi|54302166|ref|YP_132159.1| hypothetical protein PBPRB0486 [Photobacterium profundum SS9]
 gi|46915587|emb|CAG22359.1| hypothetical protein PBPRB0486 [Photobacterium profundum SS9]
          Length = 601

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/165 (42%), Positives = 88/165 (53%), Gaps = 13/165 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  LS  D L+GL N     S L S       Y    S++ FDID+FK+IND +GH VGD
Sbjct: 440 IELLSITDSLTGLYNRYKLESVLLSESSRCDRYKNNFSVIIFDIDFFKKINDTYGHLVGD 499

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  L+  L         V R GGEEF   A   +  +  I A  LR +IEN       
Sbjct: 500 DVLIHLAKLLKENTSITDVVSRWGGEEFLIVACNINLHDTYIFAEKLRILIENYNF---- 555

Query: 213 GPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            PSI  +TIS G+A+  + E IS ++ RAD ALY AKK GRN+VV
Sbjct: 556 -PSIGKMTISCGVAQYINNESISELVSRADFALYQAKKMGRNKVV 599


>gi|120555518|ref|YP_959869.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120325367|gb|ABM19682.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 316

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 110/217 (50%), Gaps = 17/217 (7%)

Query: 57  PFYGLEYILVENLSLVIISI------TISLLLGYIS--GSILKELFISYNRISQLSRIDC 108
           P  G E  + +NL++  I+        + LL+  ++   S  + L  +  ++++LS  D 
Sbjct: 100 PITGTEEYMFQNLTISPITAPNGEVEKVCLLVYDVTEFASSKRALERANEQLAKLSMTDR 159

Query: 109 LSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GLLN   +             Y +  S+V FDID+FK +ND +GH  GD+VI   +D 
Sbjct: 160 LTGLLNRGTWENLVDAEYERFRRYGQATSLVMFDIDHFKPVNDTYGHLAGDEVIRHTADV 219

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                      GR GGEEF      +  + A ++   +R+ IE S ++ S+G  I  T+S
Sbjct: 220 TRNNIRQSDSAGRYGGEEFGIILPETDAESARVICERIREAIEKSTVSTSAG-DIQYTVS 278

Query: 222 AGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
            GIA+     E     + +AD+ALY AK+SGRN+VV 
Sbjct: 279 MGIAQLTETPENYMQWMQKADEALYKAKESGRNKVVV 315


>gi|220929725|ref|YP_002506634.1| diguanylate cyclase [Clostridium cellulolyticum H10]
 gi|220000053|gb|ACL76654.1| diguanylate cyclase [Clostridium cellulolyticum H10]
          Length = 363

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/176 (38%), Positives = 96/176 (54%), Gaps = 8/176 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           + ++ + S  D L+GL N   F       I    S N K S++  DID+FK+IND  GH 
Sbjct: 187 FKKLKEESTKDYLTGLNNVREFDKLFRLVIDRAVSNNHKFSLLLIDIDFFKKINDTHGHQ 246

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GDKV+  +   L         + R GGEEF+     +S  +A  +A  +R+IIE ++  
Sbjct: 247 AGDKVLKEIGKILRHNCRANDKISRNGGEEFSILLENASNSKAIEIAERIRRIIEENEFE 306

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           I+SG  I++T+S GI+        I+ II RAD ALY AK+SGRN VV  S I +N
Sbjct: 307 ITSGRKINVTVSIGISSYPETVSDITQIIERADGALYKAKRSGRNLVVTDSVISDN 362


>gi|221065249|ref|ZP_03541354.1| diguanylate cyclase [Comamonas testosteroni KF-1]
 gi|220710272|gb|EED65640.1| diguanylate cyclase [Comamonas testosteroni KF-1]
          Length = 373

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 97/173 (56%), Gaps = 9/173 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEK----LSIVFFDIDYFKQIN 143
           +EL I ++  S  +R D L+G+ N  AF     ++ +Y  +    L  + FDID+FKQIN
Sbjct: 188 RELEIQHSIASNAARTDDLTGVNNRRAFNEKAETMFAYTRRYGVPLCALLFDIDHFKQIN 247

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GDKV+  +  Q+          GRLGGEEF     G++ QEA  +A  +R  +
Sbjct: 248 DTHGHAAGDKVLQAVVRQIKSALREADLCGRLGGEEFGVLLAGTNMQEAVQIAERIRLAV 307

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
           +  +  ++   ++ +TIS G+AE       +ST++ +AD A+Y AK +GRN+V
Sbjct: 308 QAIKEPVND-TTLQVTISVGVAEADSACADVSTLLKQADAAMYRAKSNGRNQV 359


>gi|90412402|ref|ZP_01220406.1| hypothetical protein P3TCK_11474 [Photobacterium profundum 3TCK]
 gi|90326664|gb|EAS43063.1| hypothetical protein P3TCK_11474 [Photobacterium profundum 3TCK]
          Length = 622

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/165 (41%), Positives = 90/165 (54%), Gaps = 13/165 (7%)

Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  LS  D L+GL N        S+  S    Y    S++ FDID+FK+IND +GH VGD
Sbjct: 460 IELLSITDSLTGLYNRYKLESVLSSESSRCERYQSDFSVIIFDIDFFKKINDTYGHLVGD 519

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  L+  L           R GGEEF   A  ++  EA I A  LR +IEN       
Sbjct: 520 DVLIHLAQLLKENTRITDVASRWGGEEFLIVACNTNLHEAFIFAEKLRIVIENYNF---- 575

Query: 213 GPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            PSI  +TIS G+A+  +KE IS ++ RAD ALY AKK G+N+V+
Sbjct: 576 -PSIGKMTISCGVAQYINKETISELVSRADLALYQAKKMGKNKVI 619


>gi|254457588|ref|ZP_05071016.1| GGDEF domain/pas/pac sensor domain protein [Campylobacterales
           bacterium GD 1]
 gi|207086380|gb|EDZ63664.1| GGDEF domain/pas/pac sensor domain protein [Campylobacterales
           bacterium GD 1]
          Length = 396

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 92/170 (54%), Gaps = 11/170 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
           ++ ++S+L+  D L+G+ N   F   L         Y  KLS +FFDID+FK +ND +GH
Sbjct: 231 NHEKLSKLAYFDNLTGIYNRRKFDEILKIETIRVHRYKRKLSALFFDIDHFKNVNDTYGH 290

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+V+  +S+ + +      +  R GGEEF      ++  EA ++A  +RK I +   
Sbjct: 291 DTGDEVLKKMSNIIQLHTRDTDYFARWGGEEFILLLPETNVLEANLMAEKIRKTIFSYDF 350

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           N       ++TIS G++E   KE  ST + R D+ALY AK  GRNR +  
Sbjct: 351 NKVG----NLTISIGVSELKEKERSSTFLKRLDKALYKAKNDGRNRTIVL 396


>gi|302188603|ref|ZP_07265276.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 316

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 112/216 (51%), Gaps = 12/216 (5%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
            L P   L   + +  + + + +T  + +G++S  +  +L+   N + ++SR D L+GLL
Sbjct: 92  ALDPVVNLHGNMAQIYACLPVLVTYPIFIGWLSHQVTLKLWEHRNILRKVSRTDSLTGLL 151

Query: 114 NHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           NH A        + SS  +Y E + I   DID+FK IND +GH +GD V+  +S+ L+  
Sbjct: 152 NHGAWKDLLDLEYASSQNAYQECV-IALIDIDHFKVINDTYGHLMGDTVLQSISEALIEN 210

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                 +GR GG+EF      +   +A  +   LR  I+     +     + +++S GIA
Sbjct: 211 LRDSDLIGRCGGDEFCVILPNTGLFQAKEILERLRLAIDEMTYTLQR--DLKVSLSIGIA 268

Query: 226 ERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260
               + P  S+ ++ AD+ALY+AK +GRNRV    D
Sbjct: 269 AYSPEMPDASSWLHEADKALYLAKSTGRNRVASPQD 304


>gi|229523544|ref|ZP_04412949.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|229337125|gb|EEO02142.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
          Length = 731

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/174 (36%), Positives = 96/174 (55%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIN
Sbjct: 549 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIALLDIDHFKQIN 608

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D + H +GD+ I  +S +L+   G    V R GGEEF    +G  +Q        LR  I
Sbjct: 609 DRYSHIIGDQAIVAVSQELLGYVGDNTRVARWGGEEFTILYVGDPQQAWGYFEK-LRCKI 667

Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E  Q+++S+    +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 668 E--QVDLSAVATGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 719


>gi|227822252|ref|YP_002826223.1| GGDEF family protein [Sinorhizobium fredii NGR234]
 gi|227341252|gb|ACP25470.1| GGDEF family protein [Sinorhizobium fredii NGR234]
          Length = 356

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 100/182 (54%), Gaps = 17/182 (9%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKLS----IVFFDIDYFKQIN 143
           +++    Y RI+     D L+ L N  AF  +L +   NE+L     ++  DID+FK++N
Sbjct: 166 IRQELDEYKRIAN---TDSLTRLGNRRAFDETLAAVYNNEQLRNYTGLLVVDIDHFKKVN 222

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+FGHPVGDK+++ +   +        FV R GGEEFA     S+++E    A+ +R ++
Sbjct: 223 DSFGHPVGDKILSTVGTVIRANLRRDAFVARTGGEEFAVILSDSTQEECMQAADRIRSVL 282

Query: 204 -----ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                +NS+  ++ GP   IT+S G+      +    + ++AD ALY AK SGRNR V F
Sbjct: 283 ANTPFKNSKTGVNYGP---ITLSVGVCMATAADDPLDLYHKADIALYAAKNSGRNRTVLF 339

Query: 259 SD 260
            +
Sbjct: 340 EE 341


>gi|150018526|ref|YP_001310780.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052]
 gi|149904991|gb|ABR35824.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052]
          Length = 365

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 108/196 (55%), Gaps = 11/196 (5%)

Query: 80  LLLGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKL 129
           L++ YIS      +F +   Y ++   +  D L+GL N   F +S  + +       E+L
Sbjct: 169 LIVSYISIKYADYIFETVRIYQKLRNEATKDYLTGLNNVREFDNSFNNISQRAVRKEEEL 228

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++F DID+FK+IND +GH  GD ++  L+  L+        V R+GGEEF+   L  S+
Sbjct: 229 SMLFIDIDFFKKINDTYGHNAGDTILKSLALILLDTCRAYDVVSRMGGEEFSIILLDCSD 288

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAK 248
            +A  +A  LR+ +E++   IS    I ITIS GIA   +    +  ++  AD ALY AK
Sbjct: 289 SKAVKIAERLREKVEDNDFYISDNKFIKITISIGIASYPNMTTQVDNLLEMADTALYQAK 348

Query: 249 KSGRNRVVCFSDIENN 264
            +GRN+VV F++ E+ 
Sbjct: 349 NTGRNKVVLFNNEEHK 364


>gi|77918778|ref|YP_356593.1| GGDEF domain-containing protein [Pelobacter carbinolicus DSM 2380]
 gi|77544861|gb|ABA88423.1| GGDEF domain containing protein [Pelobacter carbinolicus DSM 2380]
          Length = 431

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/177 (38%), Positives = 98/177 (55%), Gaps = 10/177 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG----SYNE---KLSIVFFDIDYFK 140
           +IL  L     +   L+ ID L+GL N  AF    G     Y+E    ++++  D+D FK
Sbjct: 255 TILGLLMAEKEKFKSLAEIDPLTGLYNRRAFFGLSGEILKKYSELDRPITVIMLDVDSFK 314

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
           QIND +GH VGD+V+  LSD +   F     +GR+GGEEFA     S   ++ A L N L
Sbjct: 315 QINDVYGHSVGDQVLVALSDLIKKTFRGSDVIGRIGGEEFAILCPNSDFVKDRAPLEN-L 373

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           RK IE  QI+ + G  I +T+S G       + +  +I +AD+ LY AK+SGRN +V
Sbjct: 374 RKEIEGFQIS-AEGHEIKVTVSIGATTGKKTDDLGALIKQADKMLYRAKESGRNCIV 429


>gi|115523955|ref|YP_780866.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
 gi|115517902|gb|ABJ05886.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
          Length = 458

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 93/172 (54%), Gaps = 13/172 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           EL     R++ L+  D L+GL N   F  +L S       Y   LS+V FD+D FK +ND
Sbjct: 276 ELRDRAKRLAVLATTDRLTGLYNRLKFDEALASEIARAKRYKTPLSLVMFDVDLFKTVND 335

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GHP+GD+V+  LSD +   +  T MF  R GGEEFA    GS+  EA ++A  LR  I
Sbjct: 336 RYGHPIGDRVLVGLSDLISSHLRETDMF-ARWGGEEFAILVTGSNHMEAHVVAEKLRIAI 394

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                +++      IT S G+ E    +   T++ RAD ALY AK  GRNRV
Sbjct: 395 ----THVAFDQVGRITCSFGVTEYRDGDIPETLVDRADGALYQAKLKGRNRV 442


>gi|209885769|ref|YP_002289626.1| diguanylate cyclase [Oligotropha carboxidovorans OM5]
 gi|209873965|gb|ACI93761.1| diguanylate cyclase [Oligotropha carboxidovorans OM5]
          Length = 379

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 23/206 (11%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFIS--------YNRISQLSRIDCLSGLLNHSAFI 119
            L L + +I+  +++G  S S L+E F S        Y RI +L+  D L+G  N  + +
Sbjct: 176 TLLLFVFTISRCMMIGMFS-SALRESFYSQGLALKEAYRRIEELAEFDELTGAHNRRSIM 234

Query: 120 SSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
            +L              S+   D+D+FK+IND+FGHPVGD+V+   +   + +F     +
Sbjct: 235 HALAEEAERAARSKSPCSVALIDLDWFKKINDHFGHPVGDEVLRTFA---ITLFANIRLI 291

Query: 173 ---GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
              GR GGEEF      + E  A  + + LR I+ +   N S  P + +T+SAG+A    
Sbjct: 292 DKFGRYGGEEFLLVLPEAGEDVAGRVVDRLRTIVADVDWN-SISPGVDMTMSAGVATLLP 350

Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255
            E + +++ RAD ALY AK  GRNR+
Sbjct: 351 GETVDSLLLRADVALYRAKDLGRNRI 376


>gi|162147651|ref|YP_001602112.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209542280|ref|YP_002274509.1| PAS/PAC sensor-containing diguanylate cyclase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786228|emb|CAP55810.1| putative signalling protein, GGDEF family [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209529957|gb|ACI49894.1| diguanylate cyclase with PAS/PAC sensor [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 602

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 85/158 (53%), Gaps = 4/158 (2%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVF----FDIDYFKQINDNFGHPVGDKVIAF 157
           Q +  D L+GL N  AF   L       S V      D+D+FK IND +GHP+GD V+  
Sbjct: 430 QAANTDELTGLPNRRAFFQVLDGQMAAASSVVAAAMLDLDHFKSINDKYGHPIGDIVLRR 489

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           ++  +         V R+GGEEFA      S   A  L   + + +    I++ +G  + 
Sbjct: 490 VATVVRATLRDTDMVARIGGEEFAVLITSESRDRAISLIRRVVRAVSAESIDLPTGVRLQ 549

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +TISAGIA R   E  + ++ RADQALYVAK++GRNR+
Sbjct: 550 VTISAGIACREAGEDRNALMSRADQALYVAKRTGRNRL 587


>gi|149194839|ref|ZP_01871933.1| diguanylate cyclase (GGDEF domain) [Caminibacter mediatlanticus
           TB-2]
 gi|149134998|gb|EDM23480.1| diguanylate cyclase (GGDEF domain) [Caminibacter mediatlanticus
           TB-2]
          Length = 508

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 87/167 (52%), Gaps = 8/167 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++S+  + D L+ + N  A +       SS   Y    S+VFFDID+FK IND +GH  
Sbjct: 342 KKLSKEVKTDFLTNIANKKAIMEELKRQESSFKRYGTNYSVVFFDIDHFKNINDTYGHDA 401

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD ++  L             +GR GGEEF A    ++   A   A  LRKI+E ++  +
Sbjct: 402 GDVILKSLGLLFKRYARDVDMIGRFGGEEFVAILPNTNIDGACKFAEKLRKIVEKTKF-M 460

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                I++T+S G+A R     +   +  AD+ LY AK+SGRNR+VC
Sbjct: 461 YKNTRINVTVSGGVASRNETNSMDETLKLADERLYKAKRSGRNRIVC 507


>gi|218529163|ref|YP_002419979.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
 gi|218521466|gb|ACK82051.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
          Length = 363

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 2/160 (1%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            Y  +++++R D L+G LN     +  G   E   I+  D+D+FK IND FGH  GD V+
Sbjct: 203 GYAAVARMARTDALTGALNRQGLAAETGGVTEA-GIIVADLDHFKAINDRFGHAAGDAVL 261

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              + +   +      + RLGGEEF     G        LA  LR+ +  + ++   G +
Sbjct: 262 RDFAARATALLPEGCHLARLGGEEFGIVLPGHDHNATTYLAERLRRAVGGAPVSW-KGSA 320

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + IT+S G+A     E ++  + RAD+ALY AK  GRNRV
Sbjct: 321 VPITVSLGVAMLRTGEALNESLERADKALYDAKTDGRNRV 360


>gi|88859082|ref|ZP_01133723.1| hypothetical protein PTD2_08759 [Pseudoalteromonas tunicata D2]
 gi|88819308|gb|EAR29122.1| hypothetical protein PTD2_08759 [Pseudoalteromonas tunicata D2]
          Length = 639

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 100/171 (58%), Gaps = 11/171 (6%)

Query: 99  RISQLSRIDCLSGLLN-----HSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVG 151
           R+++L+  D L+ L N     H A I    +  E+  LSI+ FDID+FK+INDN+GHP G
Sbjct: 471 RLNRLANTDSLTQLANRRYTFHFAKIVFKEAQIEQKPLSIIIFDIDHFKRINDNYGHPFG 530

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++D+       P  +GR+GGEEF      +   +A  +A  +R++I  +Q++ +
Sbjct: 531 DEVLMAVADKAQAGLREPDLLGRIGGEEFMVVLKNTPINQAVEIAERMRELI--AQLSFA 588

Query: 212 SG-PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +    + +T S G+A+     +   ++   AD+ALY AK +GRN+VVC  D
Sbjct: 589 AAQQQVKVTASFGVAQFNVDVDDFGSLFQHADEALYRAKNAGRNQVVCNKD 639


>gi|91976391|ref|YP_569050.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91682847|gb|ABE39149.1| diguanylate cyclase [Rhodopseudomonas palustris BisB5]
          Length = 381

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 112/218 (51%), Gaps = 18/218 (8%)

Query: 56  TPFYGLEYILVENL-SLVIISITIS--LLLGYISGSILKELFI-------SYNRISQLSR 105
           TP    +  L+E L +++++ +T+   + +G  S ++ + L+        +Y RI + + 
Sbjct: 163 TPLAMPQGSLLERLGTMLVLVLTVGRCMYIGMYSSALRESLYKRGLQLREAYQRIEEFAE 222

Query: 106 IDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+G  N    +  L     +       LS+   D+D+FK+IND+FGHP GD+V+   
Sbjct: 223 LDELTGSYNRRCIMRMLDDEIARADRSAAPLSLALIDLDWFKRINDSFGHPTGDEVLRTF 282

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  +     +    GR GGEEF      +S  EA  + + LR+I+E       S P + +
Sbjct: 283 AITIFANIRSFDRFGRYGGEEFLLLLPNTSRDEAHKMLDRLREIVEELDWTAFS-PGMRV 341

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T+SAG+      E    ++ RAD+ALY AK+ GRN++ 
Sbjct: 342 TLSAGVTAMAPNETAEAVLARADRALYAAKEDGRNKIA 379


>gi|319428543|gb|ADV56617.1| diguanylate cyclase [Shewanella putrefaciens 200]
          Length = 378

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/252 (34%), Positives = 129/252 (51%), Gaps = 24/252 (9%)

Query: 25  HTFMIYFSIF-FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI-ISITISLLL 82
           + F I+F +  FSI+I   IF   + L Y+ LT  +G+   L++N    I +  ++S LL
Sbjct: 128 YPFFIFFVLIGFSIYIQ--IFFLTVALSYVFLTENHGVLDELIQNAYFQISVQSSVSTLL 185

Query: 83  GYISGSILKELFISYN---RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIV 132
             +  S     +  YN    + + S+ D L+G+ N   F + L S   +        S++
Sbjct: 186 IMLVFSW--SYYHRYNLQLALEKSSQTDPLTGVANRRHFDNQLKSATTRSARSGVECSLI 243

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK+IND FGHP GD+VI  L+D  V        V RLGGEEFA     ++  +A
Sbjct: 244 LLDIDHFKRINDTFGHPTGDRVICALADLCVKQSRATDLVARLGGEEFAIILPDTNITDA 303

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTI-------IYRADQAL 244
             LA  +RK +E+  +   +G  +  TIS GI A   +K   +T        I +AD AL
Sbjct: 304 ENLAERIRKHVEDISVAGDAGEIVKWTISLGISALPLNKSSANTTEIVMEMFIRQADSAL 363

Query: 245 YVAKKSGRNRVV 256
           Y AK +GRN+ V
Sbjct: 364 YEAKNNGRNQTV 375


>gi|323487747|ref|ZP_08093005.1| YhcK [Planococcus donghaensis MPA1U2]
 gi|323398481|gb|EGA91269.1| YhcK [Planococcus donghaensis MPA1U2]
          Length = 370

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/187 (35%), Positives = 96/187 (51%), Gaps = 20/187 (10%)

Query: 87  GSILKELFISYNRISQL--------SRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
           G +   +F+ Y R +Q         S  D L+GL N   F       IS+    NE+LS+
Sbjct: 179 GGLTSIVFVGYIRKTQYLLMKYEKDSTTDFLTGLNNVRQFDSIWNTLISNAAEKNERLSL 238

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK +ND +GHP+GDK++  L   L     +   V R GGEEF+        Q 
Sbjct: 239 LMIDIDHFKHVNDTYGHPIGDKILVELGKVLKNSTRSFDVVSRNGGEEFSVMLPDCPHQY 298

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS---TIIYRADQALYVAK 248
           A  +A  +R  +E  +  IS    IHIT+S G+A   + E +S    I+  AD  LY AK
Sbjct: 299 AIEIAERIRIAVEQHKFEISLKEEIHITVSIGVA--TYPETVSDTVQIVDVADDCLYTAK 356

Query: 249 KSGRNRV 255
           ++GRNR+
Sbjct: 357 RTGRNRI 363


>gi|291286671|ref|YP_003503487.1| diguanylate cyclase with PAS/PAC sensor [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290883831|gb|ADD67531.1| diguanylate cyclase with PAS/PAC sensor [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 626

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 87/165 (52%), Gaps = 11/165 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI +LS  D L+ L N       L S       +N     V  DID+FK +ND  GH  G
Sbjct: 463 RIEELSVTDRLTSLYNRHKLDDVLQSEYSRHQRHNTDFCAVLIDIDHFKNVNDTHGHQTG 522

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DKV+  L++ L        ++GR GGEEF   A+ S+ +  A LA  LR+++E +   I 
Sbjct: 523 DKVLVKLAELLKANTRESDYIGRWGGEEFLIIAVESNLEGTAFLAEKLRRMVEETDFPIV 582

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                 ITIS G A+    E I+  I RAD ALY AK++GRN++V
Sbjct: 583 G----KITISLGAAQYKTGETIAHFINRADDALYTAKQTGRNKLV 623


>gi|153009474|ref|YP_001370689.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188]
 gi|151561362|gb|ABS14860.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188]
          Length = 263

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 112/219 (51%), Gaps = 14/219 (6%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI--SGSILKELFISYNR----I 100
           +I  F  G+TP      I+   LS  I + T    L YI    S L++ ++   +    +
Sbjct: 25  SIVAFTSGVTP-----GIVALGLSAGIPAATAFPSLAYIFHQHSKLQDAYLQLEKAHVEL 79

Query: 101 SQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
              SRID ++GLLN  A   ++    S  E  +++  D D+FK IND FGH VGD+ +  
Sbjct: 80  QARSRIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDTFGHGVGDRALKL 139

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+  + +      
Sbjct: 140 IAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGMRVAQRIRAEVENTPFHTTEYQVYP 199

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV
Sbjct: 200 LTISIGVASAPKNETNSQVLSRADRCLYIAKQRGRNCVV 238


>gi|197337034|ref|YP_002158471.1| sensor protein [Vibrio fischeri MJ11]
 gi|197314286|gb|ACH63735.1| sensor protein [Vibrio fischeri MJ11]
          Length = 320

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/201 (37%), Positives = 110/201 (54%), Gaps = 16/201 (7%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS- 124
           V ++SL+I  +T       I+ + L  L  S +++S LS+ID L+ L N + + S L   
Sbjct: 122 VSHISLIIHDVT------EIAKNTL-HLENSNHQLSTLSKIDGLTQLYNRAYWESCLKKE 174

Query: 125 YNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           +NE        SIV FDID+FK++NDNFGH VGD VI   ++ L          GR GGE
Sbjct: 175 FNEARAAERVSSIVMFDIDHFKKVNDNFGHTVGDDVIRDAAELLRKTSRNTDICGRYGGE 234

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TII 237
           EF      ++ ++A      LRK IENS I+ +    IH  +S GI E  ++ P   + +
Sbjct: 235 EFTVILPYTNAEQAFYFTERLRKRIENSTIS-TENEEIHYRVSLGICELSNEHPDHLSWL 293

Query: 238 YRADQALYVAKKSGRNRVVCF 258
             AD+ALY +K++GRN+   F
Sbjct: 294 EAADKALYYSKENGRNQSNVF 314


>gi|239905574|ref|YP_002952313.1| putative signaling protein [Desulfovibrio magneticus RS-1]
 gi|239795438|dbj|BAH74427.1| putative signaling protein [Desulfovibrio magneticus RS-1]
          Length = 629

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 101/186 (54%), Gaps = 10/186 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGL------LNHSAFISSLGS-YNEKLSIVFFDI 136
           + +   + E  I   R+ +++  D L+GL      L HS+ +  +   +   LSI  FDI
Sbjct: 433 FAAARDITERKIMEERLKEMATTDSLTGLNNRQHFLEHSSILFEMAKRHKANLSIALFDI 492

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FKQ+ND +GH  GD V+  LS   +  F +   +GR+GGEEFA     + ++EA + +
Sbjct: 493 DHFKQVNDTWGHEAGDLVLRELSKLALNCFRSSDIIGRIGGEEFAVIMPETDKEEAILAS 552

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNR 254
              RKI+E+++    +   + IT+S GIA+        I+ +   +D ALY AK +GRN 
Sbjct: 553 ERFRKIVESTRFEYEND-LLSITVSIGIAQFNPNTNTTINDLTKISDDALYTAKANGRNM 611

Query: 255 VVCFSD 260
           V C +D
Sbjct: 612 VFCAND 617


>gi|110632742|ref|YP_672950.1| diguanylate cyclase [Mesorhizobium sp. BNC1]
 gi|110283726|gb|ABG61785.1| diguanylate cyclase [Chelativorans sp. BNC1]
          Length = 251

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 90/171 (52%), Gaps = 3/171 (1%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGH 148
           EL   + ++++ +R+D ++GLLN SAFI+S+        +  ++  D D FKQIND FGH
Sbjct: 77  ELAAMHQKLAERARLDDMTGLLNRSAFIASVEETRVSEGRGCLILIDADRFKQINDTFGH 136

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD  +  ++  +    G    +GRLGGEEF   A   S  EA  LA ++R  +E +  
Sbjct: 137 LAGDLALIEIAGAIRGASGQMHAIGRLGGEEFGVFAFSCSLIEARKLAEEIRAAVEKTHF 196

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                  I +T+S G+         S I+  ADQ LY AK+ GRN VV  S
Sbjct: 197 APDGTEPIPLTVSIGVVAARTGAGFSEIMGEADQRLYQAKRRGRNTVVAGS 247


>gi|194365005|ref|YP_002027615.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
 gi|194347809|gb|ACF50932.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
          Length = 554

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 108/206 (52%), Gaps = 18/206 (8%)

Query: 61  LEYILVENLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           LEY  VE L L   S+T  L++  Y     L  L    + + QL+  D L+GL N  A +
Sbjct: 344 LEY-RVEALQL---SVTWLLMMAAYAMNQRLGRLRQQRDELRQLAETDGLTGLPNRRAGL 399

Query: 120 SSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L  +          L I F DID FK IND  GH VGD+V+  ++  L     +   V
Sbjct: 400 QQLARHLAQVDRERGPLVIGFLDIDLFKDINDRHGHAVGDQVLVAVARALRTAVRSQDEV 459

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQ-INISSGPSIHITISAGIAE-RCH 229
            R+GGEEF     G   + A+   + LR +IIE  Q + +   P + +T S G+A+ R  
Sbjct: 460 VRMGGEEFLLLMPGMPRETASARLDRLRQRIIEAGQALQV---PGLEVTASIGLAQWRPG 516

Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255
           ++ ++ ++ RAD A+YVAK++GRNRV
Sbjct: 517 EDDLAALLRRADHAMYVAKRAGRNRV 542


>gi|59713979|ref|YP_206754.1| GGDEF domain-containing protein [Vibrio fischeri ES114]
 gi|59482227|gb|AAW87866.1| GGDEF domain protein [Vibrio fischeri ES114]
          Length = 320

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/201 (37%), Positives = 110/201 (54%), Gaps = 16/201 (7%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS- 124
           V ++SL+I  +T       I+ + L  L  S +++S LS+ID L+ L N + + S L   
Sbjct: 122 VSHISLIIHDVT------EIAKNTL-HLENSNHQLSTLSKIDGLTQLYNRAYWESCLKKE 174

Query: 125 YNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           +NE        SIV FDID+FK++NDNFGH VGD VI   ++ L          GR GGE
Sbjct: 175 FNEARAAERVSSIVMFDIDHFKKVNDNFGHTVGDDVIRDAAELLRKTSRNTDICGRYGGE 234

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TII 237
           EF      ++ ++A      LRK IENS I+ +    IH  +S GI E  ++ P   + +
Sbjct: 235 EFTVILPYTNAEQAFYFTERLRKRIENSTIS-TENEEIHYRVSLGICELSNEHPDHLSWL 293

Query: 238 YRADQALYVAKKSGRNRVVCF 258
             AD+ALY +K++GRN+   F
Sbjct: 294 EAADKALYYSKENGRNQSNVF 314


>gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinobacterium sp. Marseille]
 gi|151282230|gb|ABR90640.1| diguanylate cyclase [Janthinobacterium sp. Marseille]
          Length = 605

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 94/174 (54%), Gaps = 9/174 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  + +   +LSR+D L+G  N   F        + +   ++ LS++ FDID FKQIND
Sbjct: 433 ELRKARDEAERLSRVDALTGAFNRRYFNEVAALEFAKVRRLHQPLSVISFDIDLFKQIND 492

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH  GD+VI   +           FV R+GGEEFA    GS+ ++AA  A  LR+++ 
Sbjct: 493 NYGHAAGDEVIKAAARVSRNAVREIDFVARIGGEEFAILLPGSTIEQAAATAERLRELVI 552

Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             Q++   G  +  T S G+A+ +   +    ++ RAD+ +Y AK  GRNRV  
Sbjct: 553 AEQVSY-QGKLLAFTASFGVAQLKDSDQSFEALLQRADEMMYRAKNLGRNRVAA 605


>gi|317050226|ref|YP_004111342.1| diguanylate cyclase [Desulfurispirillum indicum S5]
 gi|316945310|gb|ADU64786.1| diguanylate cyclase [Desulfurispirillum indicum S5]
          Length = 301

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 97/188 (51%), Gaps = 12/188 (6%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           I++L        L+E  I    + QLS +D L+ + N      +L         Y   LS
Sbjct: 119 IAVLKDVTGHRELEETIIKLYEVKQLSMLDPLTQVYNRYKLSETLKKETTRAQRYRSHLS 178

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
            +F D+D+FK IND  GH  GD+V+  +++ +  +       GR GGEEF      +S  
Sbjct: 179 FIFLDVDHFKAINDEHGHNRGDEVLRQIAELIKNMLRQSDTFGRWGGEEFIIVLPHASLD 238

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +A++ A  LR  +E + ++I S     IT S G+ E    EP   +I RAD+ALY+AK++
Sbjct: 239 DASMKAEQLRLAVEQAPLSIGS-----ITCSFGVTEYQLGEPHDQLIQRADRALYIAKQT 293

Query: 251 GRNRVVCF 258
           GRNRVV  
Sbjct: 294 GRNRVVAL 301


>gi|319645363|ref|ZP_07999596.1| YhcK protein [Bacillus sp. BT1B_CT2]
 gi|317393172|gb|EFV73966.1| YhcK protein [Bacillus sp. BT1B_CT2]
          Length = 362

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 94/182 (51%), Gaps = 13/182 (7%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLN-------HSAFISSLGSYNEKLSIVFFDI 136
           YI   + K  F+   +  + S ID L+GL N        +A IS+    NEKLS++  DI
Sbjct: 180 YIVSYLRKSHFL-LKKYEEESSIDYLTGLNNVRQFDAIWNAHISNAKEKNEKLSLLLIDI 238

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK IND +GH  GD ++  L   L     +   V R GGEEF+      S  +AA +A
Sbjct: 239 DYFKTINDTYGHSNGDAILKELGTILKKSARSEDIVSRNGGEEFSVILPNCSHSQAAEIA 298

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRN 253
             +RK +E     IS    IHIT+S G+A   E  H      +I +ADQ LY AK  GRN
Sbjct: 299 ERVRKEVETHTFFISHSKKIHITVSIGVAAFPEVIH--STEELIEKADQCLYRAKHLGRN 356

Query: 254 RV 255
           RV
Sbjct: 357 RV 358


>gi|91776974|ref|YP_546730.1| diguanylate cyclase [Methylobacillus flagellatus KT]
 gi|91710961|gb|ABE50889.1| diguanylate cyclase (GGDEF domain) [Methylobacillus flagellatus KT]
          Length = 599

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 95/184 (51%), Gaps = 10/184 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           S  +++EL      +++++  D L+G LN      +L         +  +LS+   DID+
Sbjct: 416 SERLVQELTAKLEHVNEVAHEDFLTGTLNRRGMEQALEREFDRARRHATRLSLAMMDIDH 475

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILAN 197
           FK++ND  GH  GDK +  LS  L     +   + R GGEEF      + E EA  I+  
Sbjct: 476 FKRLNDRLGHATGDKALVHLSKVLKASLRSTDVLARYGGEEFIIILPDTGEAEAVEIMKR 535

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             R +  N    + +   + IT SAG+AER   EP  +++ RAD+ALY AK++GRN V  
Sbjct: 536 AQRDLTRN--FFMHNNERVLITFSAGVAEREQDEPPESLVPRADRALYHAKQAGRNMVAG 593

Query: 258 FSDI 261
            +DI
Sbjct: 594 AADI 597


>gi|148254453|ref|YP_001239038.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1]
 gi|146406626|gb|ABQ35132.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1]
          Length = 382

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 100/198 (50%), Gaps = 15/198 (7%)

Query: 73  IISITISLLLGYISGSILKELFI-------SYNRISQLSRIDCLSGLLNHSAFISSL--- 122
           +++I   + LG  S S+ + L+        +Y RI +L+ +D L+G LN  + +  L   
Sbjct: 184 VLTIAGCMFLGIFSSSLRESLYQRGLKLKEAYRRIEELAELDELTGALNRRSIMHVLEEE 243

Query: 123 ----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                   +  S++  D+D+FK+IND  GHP GD V+   +  +     +    GR GGE
Sbjct: 244 LTRSRQTGKPCSVMLIDLDWFKRINDEHGHPTGDDVLRTFAITMFANIRSSDRFGRYGGE 303

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EF     G+    A  LA  LR+II +   +  S   + +T SAG+A     E   +++ 
Sbjct: 304 EFLLVLPGAPLDPACRLAERLRQIIADLDWSAFSA-GLQVTFSAGVATSRGDETTESLLS 362

Query: 239 RADQALYVAKKSGRNRVV 256
           RAD+ALY +K  GRNRV 
Sbjct: 363 RADRALYASKAQGRNRVT 380


>gi|330949860|gb|EGH50120.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 358

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 116/220 (52%), Gaps = 12/220 (5%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
            L P   L   + +  + + + +   + +G++S  +  +L+   N + ++SR D L+GLL
Sbjct: 134 ALNPVINLHGNMAQIYACLPVLVIYPIFIGWLSHQVTLKLWEHRNILRKVSRTDSLTGLL 193

Query: 114 NHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           NH A        + S+ G+Y E + I   DID+FK IND +GH +GD V+  +S+ L+  
Sbjct: 194 NHGAWKDLLDLKYASNQGAYQECV-IALIDIDHFKVINDTYGHLMGDTVLQSISEALIEN 252

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                 +GR GG+EF      +S  +A  +   LR  I+     +     + +++S GIA
Sbjct: 253 LRDSDLIGRCGGDEFCVILPDTSLFQAKEILERLRLAIDEMTYTLHC--DLKVSLSIGIA 310

Query: 226 ERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
               + +  S+ ++ AD+ALY+AK +GRNRVV   D  ++
Sbjct: 311 AYSPEMQDASSWLHEADKALYLAKSTGRNRVVSPQDAPSD 350


>gi|326795877|ref|YP_004313697.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326546641|gb|ADZ91861.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 480

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 93/163 (57%), Gaps = 8/163 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSA----FISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPV 150
           N++ +++R D L+G +N       F  ++GS N+K   LS+V  DID+FK++NDNFGH  
Sbjct: 314 NKLERMARYDHLTGAVNRQTLDVLFQKAIGSSNKKQEALSLVLIDIDHFKKVNDNFGHQA 373

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDKVI+ ++  +  +      + R GGEEF      + + +A  L   L   IE+++ ++
Sbjct: 374 GDKVISGVARIMKNLLHKEDIICRWGGEEFLFILSNTDKSKATSLIKTLLNRIEDTKFDV 433

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
               ++ ITISAG+ +    E +   I RAD  LY AKK GRN
Sbjct: 434 GE-STVSITISAGLTQLNTDESLPQAIARADARLYQAKKEGRN 475


>gi|170289046|ref|YP_001739284.1| TPR repeat-containing diguanylate cyclase and serine/threonine
            protein kinase [Thermotoga sp. RQ2]
 gi|170176549|gb|ACB09601.1| diguanylate cyclase and serine/threonine protein kinase with TPR
            repeats [Thermotoga sp. RQ2]
          Length = 1203

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 86/157 (54%), Gaps = 12/157 (7%)

Query: 107  DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
            D L+G+L+   F+  L         Y   LSI+  D D FK+IND FGH  GDK + +L 
Sbjct: 1042 DPLTGVLSRWYFMERLEEEAYKSSRYKSPLSIIMCDADDFKKINDQFGHVAGDKTLGWLG 1101

Query: 160  DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             ++  V      VGR GGEEF  A  G+S +EA I+A  LRK +     N     + HIT
Sbjct: 1102 RKMKSVLRKSDLVGRYGGEEFIIALPGTSLEEAKIVAEKLRKAVMEDPEN-----TYHIT 1156

Query: 220  ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +S G+AE  + E     I RAD+ALY+AK  G+N VV
Sbjct: 1157 LSFGVAEYKNGEDPFETIKRADEALYLAKTLGKNSVV 1193


>gi|318041790|ref|ZP_07973746.1| diguanylate cyclase [Synechococcus sp. CB0101]
          Length = 394

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 105/196 (53%), Gaps = 16/196 (8%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS------L 122
           L LV + +T   L+  +   +L EL         L++ D LSG+LN  AF+ +      L
Sbjct: 192 LGLVPLFLTTGALVLVVRRQLLPELI-------SLAQTDSLSGVLNRGAFLEAADERLEL 244

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
              ++ + +   DID+FK IND +GH  GD+VI  ++D L         VGRLGG+EFA 
Sbjct: 245 PGLDQPMVVALIDIDHFKTINDTYGHAAGDEVIRRMADFLNGAVRRGDLVGRLGGDEFAL 304

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRA 240
               ++ Q   +L   LR+ + + +  ++ G    +T+S G+ E+    ++ +S ++  A
Sbjct: 305 LVAAAAPQAHDLLER-LRQRVASQRWTLADGSEPQLTLSIGMVEKGSEGRQHLSELLQAA 363

Query: 241 DQALYVAKKSGRNRVV 256
           D ALYVAK  GRN+V+
Sbjct: 364 DAALYVAKDQGRNQVM 379


>gi|261253052|ref|ZP_05945625.1| GGDEF family protein [Vibrio orientalis CIP 102891]
 gi|260936443|gb|EEX92432.1| GGDEF family protein [Vibrio orientalis CIP 102891]
          Length = 345

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 108/205 (52%), Gaps = 8/205 (3%)

Query: 68  NLSLVIISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN 126
           N + + ++ +++ L  ++S  IL+ +   S   + QL+  D L+G+ N  A I +   Y 
Sbjct: 142 NFAELSVNFSLAYLCIWLSSHILEVKRKTSVTSLGQLASRDALTGVYNRHALIHNFERYR 201

Query: 127 EK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
            +     LS++  D+DYFK +ND +GH  GD+V+   +  L+  F     V R+GGEEF 
Sbjct: 202 NESAKVPLSLLILDLDYFKNVNDKYGHDAGDRVLV-QTAALIDSFCDEHLVYRIGGEEFC 260

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
            A   +  + A   A  +R  IE+   N    P I +T S GI +  H + +  ++  AD
Sbjct: 261 IALHNTEVKSAMYKAEQIRTGIEHYTFNDKENP-IRLTASIGIYQCDHYKCLEDVLREAD 319

Query: 242 QALYVAKKSGRNRVVCFSDIENNTC 266
           + LY AK +GRN+V+  +  E +TC
Sbjct: 320 KELYKAKSNGRNQVMVCNQTECSTC 344


>gi|157963612|ref|YP_001503646.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157848612|gb|ABV89111.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           pealeana ATCC 700345]
          Length = 621

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 116/208 (55%), Gaps = 19/208 (9%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLG 123
           E LS ++   T+ L +       L+EL  +  ++++ +R+D L+G+ N ++F   I + G
Sbjct: 422 EKLSQMVQERTLELEIA------LRELNEANQKLTEQTRVDSLTGVKNRASFDKRIMAEG 475

Query: 124 SYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGE 178
             + +    LSI+  DID FK IND++GH  GD+ +  ++D+L      P   V R GGE
Sbjct: 476 RISRRQQTPLSILMLDIDRFKLINDSYGHLAGDQALRVIADKLKETLKRPTDLVSRFGGE 535

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAER--CHKEPIST 235
           EFA     + +  A  +A  LRK+I   ++ IS G  SI +T+S G++      +E  + 
Sbjct: 536 EFAIILPNTDKIGAQQVAETLRKVI--CELPISWGEDSIPLTVSIGVSSEIITSEEHTTL 593

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDIEN 263
           ++ +AD+ALY AK  GRNRV  +S  ++
Sbjct: 594 LLEQADKALYQAKNDGRNRVRLYSPDQD 621


>gi|330942360|gb|EGH44981.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 358

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 111/216 (51%), Gaps = 12/216 (5%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
            L P   L   + +  + + + +T  + +G++S  +  +L+   N + ++SR D L+GLL
Sbjct: 134 ALDPVVNLHGNMAQIYACLPVLVTYPIFIGWLSHQVTLKLWEHRNILRKVSRTDSLTGLL 193

Query: 114 NHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           NH A        + SS  +Y E + I   DID+FK IND +GH +GD V+  +S+ L   
Sbjct: 194 NHGAWKDLLDLEYASSQNAYQECV-IALIDIDHFKVINDTYGHLMGDTVLQSISEALTEN 252

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                 +GR GG+EF      +   +A  +   LR  I+     +     + +++S GIA
Sbjct: 253 LRDSDLIGRCGGDEFCVILPDTCLLQAKEILERLRLAIDEMTYTLHC--DLKVSLSIGIA 310

Query: 226 ERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260
               + P  S+ ++ AD+ALY+AK +GRNRV    D
Sbjct: 311 AYSPEMPDASSWLHEADKALYLAKSTGRNRVASPQD 346


>gi|262404021|ref|ZP_06080576.1| GGDEF family protein [Vibrio sp. RC586]
 gi|262349053|gb|EEY98191.1| GGDEF family protein [Vibrio sp. RC586]
          Length = 953

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 68/172 (39%), Positives = 94/172 (54%), Gaps = 9/172 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQINDN 145
           ++L    ++  +LS+ D L+GL N  AF  SL     +L      I   DID+FKQIND 
Sbjct: 773 QKLRFQADKFERLSKEDELTGLANRRAFDMSLKQAFTQLPDLPLCIAVLDIDHFKQINDR 832

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           + H +GD+VI  +S QL+   G    V R GGEEF     G  +QEA      LR +IE 
Sbjct: 833 YSHIIGDQVIVSVSQQLLKYVGDKTKVARWGGEEFTVLYFG-PQQEAWGYFEQLRHVIE- 890

Query: 206 SQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            Q++ S+  S + +T+S G A+    E   T++  AD AL  AK+ GRNRVV
Sbjct: 891 -QVDFSTVDSGLTVTVSIGFADSQQAECYETVLKLADHALLTAKQLGRNRVV 941


>gi|289676957|ref|ZP_06497847.1| GGDEF [Pseudomonas syringae pv. syringae FF5]
 gi|330977848|gb|EGH77751.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 350

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 113/218 (51%), Gaps = 12/218 (5%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
            L P   L   + +  + + + +T  + +G++S  +  +L+   N + ++SR D L+GLL
Sbjct: 126 ALDPVVNLHGNMAQIYACLPVLVTYPIFIGWLSHQVTLKLWEHRNILRKVSRTDSLTGLL 185

Query: 114 NHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           NH A        + SS  +Y E + I   DID+FK IND +GH +GD V+  +S+ L   
Sbjct: 186 NHGAWKDLLDLEYASSQNTYQECV-IALIDIDHFKVINDTYGHLMGDTVLQSISEALTEN 244

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                 +GR GG+EF      +   +A  +   LR  I+     +    ++ +++S GIA
Sbjct: 245 LRDSDLIGRCGGDEFCVILPDTCLLQAKEILERLRLAIDEMTYILHC--NLKVSLSIGIA 302

Query: 226 ERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
               + P  S+ ++ AD+ALY+AK +GRNRV    D +
Sbjct: 303 AYSPEMPDASSWLHEADKALYLAKSTGRNRVASHQDAQ 340


>gi|224372154|ref|YP_002606526.1| ggdef domain protein [Nautilia profundicola AmH]
 gi|223589281|gb|ACM93017.1| ggdef domain protein [Nautilia profundicola AmH]
          Length = 347

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 126/235 (53%), Gaps = 19/235 (8%)

Query: 39  IATVIFIANIF-LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL----KEL 93
           IA +I + ++F LF+I L   Y ++      L + +++ +I   LG++    L    KE 
Sbjct: 117 IAIIISVYSLFALFFIKLFNLYNIDAFSFMTLIMSLVAFSI---LGFLISLQLDKYAKET 173

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
                ++ +L+ ID L+ + N  AF       +       + L+++  DID+FK+IND +
Sbjct: 174 LEQSKKLEKLALIDELTQIFNRRAFFKIAQKLLMQAKREEKTLTLIMMDIDHFKKINDTY 233

Query: 147 GHPVGDKVI-AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           GH  GD V+ +F+S+   ++    +F  R+GGEEF      +SE++   + + +   I N
Sbjct: 234 GHKAGDIVLKSFVSEIQKIIRQNDLF-ARIGGEEFVLLLYDTSEKDVDAIVDKILNAIRN 292

Query: 206 SQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             I+I+    I IT+S G  I +  +++ I   +  AD+ALYVAKK+GRN+ V +
Sbjct: 293 MHISINENTMIQITVSLGIYIIQSYNEDNIQQALINADKALYVAKKTGRNKAVYY 347


>gi|192361145|ref|YP_001983912.1| GGDEF domain-containing protein [Cellvibrio japonicus Ueda107]
 gi|190687310|gb|ACE84988.1| GGDEF domain protein [Cellvibrio japonicus Ueda107]
          Length = 371

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 96/171 (56%), Gaps = 12/171 (7%)

Query: 88  SILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDN 145
           S +  L  +YNR  I Q+     ++ L+NHS   ++  +     +++  DID+FKQINDN
Sbjct: 209 STVDPLTQAYNRFGIDQI-----VTTLMNHSELQTTEAA---DFALMVMDIDHFKQINDN 260

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH +GDK++  ++  +        F+GR GGEEF      +S++ A  LA+ +R++I  
Sbjct: 261 YGHDLGDKILQRIAHIIQENLHAEDFLGRWGGEEFIVIQPNTSKEFAMALADKIRQVIAT 320

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +     SG ++ +T+S G+ ER   E  +    R D+ALY AK  GRNR +
Sbjct: 321 TY--FESGNTVRVTLSVGVGERLIGEDFAATFKRVDEALYRAKAEGRNRCI 369


>gi|153835713|ref|ZP_01988380.1| putative sensory box/ggdef family protein [Vibrio harveyi HY01]
 gi|148867646|gb|EDL66934.1| putative sensory box/ggdef family protein [Vibrio harveyi HY01]
          Length = 329

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 98/169 (57%), Gaps = 13/169 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ +LS  D L+G+LN  AF++SL          ++ LS +  DID+FK+IND  GH  
Sbjct: 141 KRLKELSETDELTGVLNRRAFLTSLDKAMSSHVQPSQTLSCIMIDIDHFKEINDQVGHFS 200

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+VI  ++           F+GRLGGEEFA   + +S  +A  +A  +R+ I+N+   +
Sbjct: 201 GDQVIHHVAKICQRAIRGSDFIGRLGGEEFAVILVNTSAIQAYDVAERIREAIQNAPCKV 260

Query: 211 SSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256
             G  +  T+S G+AE  + E +S+   ++  AD+A+Y +K SGRN+V 
Sbjct: 261 -DGIEVSTTVSIGVAE--YDEQVSSTTELMVNADKAMYYSKHSGRNQVT 306


>gi|89092715|ref|ZP_01165668.1| GGDEF/HAMP domain protein [Oceanospirillum sp. MED92]
 gi|89083227|gb|EAR62446.1| GGDEF/HAMP domain protein [Oceanospirillum sp. MED92]
          Length = 580

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 92/168 (54%), Gaps = 9/168 (5%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+ +LN  AF       I     YN +L+I+  DID+FKQIND +GH  GDKV
Sbjct: 411 KLASTDPLTRVLNRRAFDQRSREEIERSHRYNRELAIILLDIDHFKQINDQYGHQFGDKV 470

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +++ +         + R GGEEF      + E  A ++A  +RK I   +I      
Sbjct: 471 LIDVANLIGPSLRAADCLCRHGGEEFIILLPETDEATALLIAERVRKSIAQHKIT-DRHD 529

Query: 215 SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           S+ IT S G+A  R  +  I   +YRADQA+Y AK SGRN+VV F+ +
Sbjct: 530 SLSITASFGVAVWRREEGDIQPAVYRADQAMYKAKNSGRNKVVAFTRV 577


>gi|88706305|ref|ZP_01104011.1| conserved hypothetical protein, membrane [Congregibacter litoralis
           KT71]
 gi|88699456|gb|EAQ96569.1| conserved hypothetical protein, membrane [Congregibacter litoralis
           KT71]
          Length = 556

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 94/178 (52%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           +EL      +  L+ +D L+ + N  A  ++L +       Y   LS++  DID FKQ+N
Sbjct: 370 RELKTKNAELDHLASVDKLTDIFNRRALDAALSTELARAKRYQRSLSLLLMDIDLFKQVN 429

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D++GH  GDKV+  L+ ++         +GR GGEEF      +S ++A  +A  +R  I
Sbjct: 430 DHYGHLTGDKVLVTLTKEIQQKLRGSDILGRWGGEEFLIVCPETSLEQARNIAEKIRSSI 489

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E +       P+  ITIS GI+     +    ++ RAD+ALY+AK  GRN V  +SD+
Sbjct: 490 EQTDFR----PASKITISIGISVLGDNDTAEALVARADRALYMAKSQGRNCVRVYSDL 543


>gi|303245624|ref|ZP_07331907.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio fructosovorans JJ]
 gi|302492887|gb|EFL52752.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio fructosovorans JJ]
          Length = 418

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 93/172 (54%), Gaps = 9/172 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQIND 144
           E+     ++ + S  D L+ L N   F  +       L    E +++   DID+FK++ND
Sbjct: 246 EMLEYIQKLRETSIRDPLTSLYNRRHFFETSKDCYKRLARGEEPMTLAMLDIDHFKRVND 305

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGD+V+  ++  L   F     V RLGGEEF   A+G   Q+A    NDLR  IE
Sbjct: 306 TYGHAVGDEVLKHVAHGLSNRFRGRDIVARLGGEEFCVLAMGLEGQQALAAFNDLRNSIE 365

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S+   +   S+ +TIS G+ ++  K  I  ++  AD ALY AK++GRNRVV
Sbjct: 366 RSKAK-AGNISVGVTISIGLCDKP-KGSIENMLADADAALYKAKRTGRNRVV 415


>gi|152983535|ref|YP_001347829.1| hypothetical protein PSPA7_2463 [Pseudomonas aeruginosa PA7]
 gi|150958693|gb|ABR80718.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 341

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 96/185 (51%), Gaps = 12/185 (6%)

Query: 83  GYISGSILKE----LFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEK-LSI 131
           GY+    L E    L     R  + S +D L+ L N + F +       L   NE+   I
Sbjct: 156 GYLQLRSLTEHTRFLRQEIGREQRRSLLDPLTQLWNRAGFDALHRHELELAQANEQNAGI 215

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           ++ DID+FK+IND +GH  GD V+   + +L         + R GGEEF A        E
Sbjct: 216 IYSDIDHFKRINDTYGHKAGDTVLREAASRLRAALRPEDLLARFGGEEFVALVRVRDHLE 275

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
            +++AN +R+++E + I+ +  P + +TISAG     H E +   + RAD ALY AK+ G
Sbjct: 276 LSVVANRIRELMEATPIDCAGTP-VTMTISAGCTLARHAEELERSLARADAALYEAKRGG 334

Query: 252 RNRVV 256
           RNRVV
Sbjct: 335 RNRVV 339


>gi|52080677|ref|YP_079468.1| GGDEF-domain-containing protein [Bacillus licheniformis ATCC 14580]
 gi|52786050|ref|YP_091879.1| YhcK [Bacillus licheniformis ATCC 14580]
 gi|52003888|gb|AAU23830.1| GGDEF-domain containing protein [Bacillus licheniformis ATCC 14580]
 gi|52348552|gb|AAU41186.1| YhcK [Bacillus licheniformis ATCC 14580]
          Length = 362

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 94/182 (51%), Gaps = 13/182 (7%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLN-------HSAFISSLGSYNEKLSIVFFDI 136
           YI   + K  F+   +  + S ID L+GL N        +A IS+    NEKLS++  DI
Sbjct: 180 YIVSYLRKSHFL-LKKYEEESSIDYLTGLNNVRQFDAIWNAHISNAKEKNEKLSLLLIDI 238

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK IND +GH  GD ++  L   L     +   V R GGEEF+      S  +AA +A
Sbjct: 239 DYFKTINDTYGHSNGDAILKELGTILKKSARSEDIVSRNGGEEFSVILPNCSHSQAAEIA 298

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRN 253
             +RK +E     IS    IHIT+S G+A   E  H      +I +ADQ LY AK  GRN
Sbjct: 299 ERVRKEVETHTFFISHSKKIHITVSIGVAAFPEVIH--STGELIEKADQCLYRAKHLGRN 356

Query: 254 RV 255
           RV
Sbjct: 357 RV 358


>gi|16760753|ref|NP_456370.1| hypothetical protein STY2005 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29141489|ref|NP_804831.1| hypothetical protein t1011 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213163492|ref|ZP_03349202.1| hypothetical protein Salmoneentericaenterica_27115 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213424175|ref|ZP_03357040.1| hypothetical protein SentesTyphi_00320 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213615719|ref|ZP_03371545.1| hypothetical protein SentesTyp_15079 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213648151|ref|ZP_03378204.1| hypothetical protein SentesTy_13209 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|25512044|pir||AC0731 conserved hypothetical protein STY2005 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503050|emb|CAD05549.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137116|gb|AAO68680.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 376

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 131/267 (49%), Gaps = 30/267 (11%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGL-------TPFYGLEYILVE---- 67
           + S+  + F++++ + F+  ++ ++ +  +   Y  L        P + L  +L      
Sbjct: 110 MWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLW-LTALLASVQLN 168

Query: 68  ---NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDCLSGLLN 114
              N+  +++ +T++ +L Y   I      E ++ Y        R+  ++  D L+G  N
Sbjct: 169 QYVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTAN 228

Query: 115 HSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM- 170
             +  S LG      E  +++  D+DYFK  NDN+GH  GD  +A ++  +     TP  
Sbjct: 229 RRSMESFLGDALRQTEPFALIMLDVDYFKNYNDNYGHQAGDACLAKVACVVKRSIRTPAD 288

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCH 229
            V R GGEEF      SS  EAA++A  ++  + E +  +++S  S  +T+S GI     
Sbjct: 289 LVARYGGEEFVVVLPSSSLNEAALVAKRIQTNLRETALPHVASAVSETVTVSMGITLSTA 348

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV 256
            + ++ II RAD+ALY AK+ GRNR V
Sbjct: 349 GDTVTGIIARADEALYRAKQQGRNRWV 375


>gi|114320653|ref|YP_742336.1| putative GAF sensor protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227047|gb|ABI56846.1| putative GAF sensor protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 689

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 102/198 (51%), Gaps = 12/198 (6%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLG- 123
           +E  +++ ++  +++LL      +L       NR + + +  D L+G+ N       +  
Sbjct: 492 IEREAVLDLADEVAVLLSRKEIDLLNAQLTEANRRLKRQATTDSLTGVWNRYRMQEQIEL 551

Query: 124 ------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y    S++ FDID+FK +ND +GH  GD+V+  L+  +V       F+GR GG
Sbjct: 552 ERGAHERYGTPCSLLLFDIDHFKAVNDQYGHEAGDQVLVALARAVVGELRATDFLGRWGG 611

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EEF   A  S+ +EA  LA  LR+ I   +     GP   +TIS G+A     + +  +I
Sbjct: 612 EEFIVLATNSAPEEAWTLAERLRQCIAGLRFP-GVGP---VTISVGVASLSRGDTVDRLI 667

Query: 238 YRADQALYVAKKSGRNRV 255
            RAD+A+Y AK+ GRNRV
Sbjct: 668 DRADRAMYRAKQRGRNRV 685


>gi|254491577|ref|ZP_05104756.1| GGDEF domain protein [Methylophaga thiooxidans DMS010]
 gi|224463055|gb|EEF79325.1| GGDEF domain protein [Methylophaga thiooxydans DMS010]
          Length = 462

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 91/175 (52%), Gaps = 10/175 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNH----SAFISSL---GSYNEKLSIVFFDIDYFKQIN 143
           +EL     ++ QLS+ D L+G+ N      AF   L     Y    +IV  DID FKQIN
Sbjct: 291 RELQRVNKKLEQLSQRDHLTGIHNRYYLDQAFQQELTRYKRYQHGFTIVMLDIDLFKQIN 350

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D++GH VGD VI  ++  L         V R GGEEF      +S   A  LA  LR++I
Sbjct: 351 DSYGHVVGDDVIKQIAMLLREHVRDQDVVARWGGEEFLILNPETSLDGARTLAEHLRRLI 410

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   +     I +T+S G+ +    E I T+I RAD ALY AK+SGR++ V F
Sbjct: 411 RRTPFTVD---KIDVTVSFGVTDYRAGEDIETMIQRADSALYQAKQSGRDKTVVF 462


>gi|316934369|ref|YP_004109351.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
 gi|315602083|gb|ADU44618.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
          Length = 355

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/181 (34%), Positives = 99/181 (54%), Gaps = 11/181 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           L +S   I   S  D L+GL N        H A  S+  S+ + LS++  DID+FK  ND
Sbjct: 167 LQLSLEAIRNESLTDPLTGLGNRKHFDRTVHDALRSAAASH-QPLSLLMMDIDHFKSFND 225

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+  +   L        F  R GGEEFA     +  ++A I+A+++R+ + 
Sbjct: 226 TYGHLTGDQVLRLVGLTLKQSIKGQDFTARYGGEEFAVVLPNTPLRQAIIVADNIRRQVM 285

Query: 205 NSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           + ++   S   I   +T+SAG++     + + ++I RAD  LY AK++GRNRVVC +D E
Sbjct: 286 SKELKKKSTGEILGRVTLSAGVSTLKPNDDVESLIGRADACLYAAKRNGRNRVVCETDPE 345

Query: 263 N 263
           +
Sbjct: 346 H 346


>gi|227329545|ref|ZP_03833569.1| hypothetical protein PcarcW_20268 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 490

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/165 (41%), Positives = 91/165 (55%), Gaps = 8/165 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAF---ISSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ Q++  D L+GL+N  AF      LG+ N    + LSI+  DID+FK+IND +GH VG
Sbjct: 324 RLEQMATTDKLTGLMNRQAFDYLFRRLGAKNALQHKSLSILLIDIDHFKRINDQYGHNVG 383

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  +S  L     +     R GGEEF           A   A  LR  IE +QI   
Sbjct: 384 DFVLQGVSALLSSNTRSSDQSCRWGGEEFVILLDDCDINAAQQRAEALRHSIEIAQIPHR 443

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G +I +T+S G+AE    E +S +I RAD ALY AK+ GRNRVV
Sbjct: 444 EG-TIQVTVSCGVAEYRAGETLSMLINRADIALYQAKQQGRNRVV 487


>gi|218886572|ref|YP_002435893.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218757526|gb|ACL08425.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 730

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 8/167 (4%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148
           +  R+ QL+  D L+GL N   F+ +L         Y   L+++  D+D FK++ND +GH
Sbjct: 542 AQERLRQLATTDGLTGLANRRRFLEALEHEVQRHRRYGTPLALISIDVDRFKRVNDTWGH 601

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+V+  L+            VGR+GGEEFA     ++ +EA  +A  LR  +E + +
Sbjct: 602 AVGDEVLRALAGICRAEVRDVDTVGRIGGEEFAVLLPDTAPEEAMAVAERLRAGVEAAPL 661

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             ++GP + +T+S G++     +   T++  AD+ALY AK  GRNRV
Sbjct: 662 LTTAGP-LTVTLSLGVSASPPCDGADTLLREADRALYRAKAGGRNRV 707


>gi|220925196|ref|YP_002500498.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium nodulans ORS 2060]
 gi|219949803|gb|ACL60195.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium nodulans ORS 2060]
          Length = 300

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 93/167 (55%), Gaps = 10/167 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +L+  D LSGLLN  AF+  +    E+      L +V  DID+FK+IND  GH VGD  I
Sbjct: 131 RLAETDMLSGLLNRRAFLQRVTDAAERAGDHGRLGLVLADIDHFKRINDENGHDVGDLAI 190

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L  +      VGRLGGEEF  A  G + +EA   AN +R    + +   + GP 
Sbjct: 191 QGVAQALCEI--PDGIVGRLGGEEFGIALPGRTLEEAEAAANRIRLRCTHLRFKGARGP- 247

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV-CFSDI 261
           + +T S G++     E ++++  RAD ALY AK  GRNRVV  F+D+
Sbjct: 248 VQLTCSFGVSAWSEGETVASLHKRADIALYEAKSIGRNRVVSAFADL 294


>gi|302879651|ref|YP_003848215.1| diguanylate cyclase [Gallionella capsiferriformans ES-2]
 gi|302582440|gb|ADL56451.1| diguanylate cyclase [Gallionella capsiferriformans ES-2]
          Length = 446

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 98/182 (53%), Gaps = 12/182 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLN----HSAFISSLGSYNEK----LSIVFFDIDY 138
           G +++ L  + N++ Q S  D L+G+ N    + A  + +G Y  +     S++  DID+
Sbjct: 269 GELVQVLETNNNKLRQESLTDALTGVGNRRMINQAIEAEIGRYYRQERSAFSLLLLDIDH 328

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND  GHP GD+V+  L   +         + R GGEEFA     +S   A  LAN 
Sbjct: 329 FKKINDTHGHPFGDEVLKSLCLTVKKRLRATDTLARWGGEEFAVLLPAASLSAATNLANH 388

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +R+ IEN++I   S     +T+S G AE    E +  ++ R D+ALY AK++GRN V+  
Sbjct: 389 IREDIENNKIPAESS----VTVSIGTAEYRRGESLEILLQRVDKALYQAKQNGRNTVIPA 444

Query: 259 SD 260
            D
Sbjct: 445 DD 446


>gi|323488193|ref|ZP_08093444.1| response regulator diguanylate cyclase/phosphodiesterase
           [Planococcus donghaensis MPA1U2]
 gi|323398197|gb|EGA90992.1| response regulator diguanylate cyclase/phosphodiesterase
           [Planococcus donghaensis MPA1U2]
          Length = 536

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 101/191 (52%), Gaps = 17/191 (8%)

Query: 84  YISGSILKELFISY--NRIS------QLSRIDCLSGLLNHSAF---ISSLGSYNEK---- 128
           ++S  +   LF+ Y  NR+       Q +  D L+G  N   F   +S + + +EK    
Sbjct: 209 FLSKPLNMALFVPYVLNRLRLQKMILQETLYDELTGAGNRKYFNDVLSQMTTLSEKSKKT 268

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            ++V FD+D+FK++NDN+GHP+GD+V+   S  L+       +  R GGEEFA     ++
Sbjct: 269 FTLVLFDLDHFKKVNDNYGHPIGDEVLQAFSQLLLKKKRDSDYFFRYGGEEFALILPDTA 328

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
            + A       R    N      S  S H+T SAGI+E   K+   T++ +ADQALY AK
Sbjct: 329 AETAISFVEQTRLDFANIAFTDQSNNSFHVTFSAGISEYRQKQ--DTLVTKADQALYQAK 386

Query: 249 KSGRNRVVCFS 259
           K+GRN+ + F 
Sbjct: 387 KNGRNQTMMFE 397


>gi|229515726|ref|ZP_04405185.1| GGDEF family protein [Vibrio cholerae TMA 21]
 gi|229347495|gb|EEO12455.1| GGDEF family protein [Vibrio cholerae TMA 21]
          Length = 691

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/174 (36%), Positives = 96/174 (55%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIN
Sbjct: 509 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIAVLDIDHFKQIN 568

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D + H +GD+ I  +S +L+   G    V R GGEEF    +G  +Q        LR  I
Sbjct: 569 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPKQAWGYFEK-LRCKI 627

Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E  Q+++S+  P +++T+S G A+    E   T++  AD AL  AKK GRN VV
Sbjct: 628 E--QVDLSAVAPGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNCVV 679


>gi|222149543|ref|YP_002550500.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221736525|gb|ACM37488.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 242

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 109/220 (49%), Gaps = 17/220 (7%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI--------LKELFIS 96
           +A  F + +GL P        +  +  V +S+ +S LLG    +         ++ L I+
Sbjct: 14  VALPFCWVLGLVP--------MPIIDAVKLSVAMSWLLGSFVATFTGVFVAREIRSLAIA 65

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
             +   LSRID LSGLLN  AF  +L       S+   D+D+FK IND +GH  GD VI 
Sbjct: 66  KAKYEHLSRIDGLSGLLNRRAFSEALDQTEGNASLAIADLDWFKSINDAYGHSAGDFVIR 125

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++D L      P    RLGGEEF     G + Q+     + +R+ I + +++   G  I
Sbjct: 126 AVADILCHFANDPHVTARLGGEEFGLIIQGDTIQQRFERIDMIRRSISDLRLHF-DGRLI 184

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +IS G+AE   +     +   AD+ALY AK +GRN +V
Sbjct: 185 STSISIGVAEISPERRPEVVYAAADRALYRAKANGRNCIV 224


>gi|163759001|ref|ZP_02166087.1| hypothetical protein HPDFL43_04535 [Hoeflea phototrophica DFL-43]
 gi|162283405|gb|EDQ33690.1| hypothetical protein HPDFL43_04535 [Hoeflea phototrophica DFL-43]
          Length = 257

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 92/157 (58%), Gaps = 10/157 (6%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GL N   F  +LG Y       N+ + +V FD+D+FKQ+ND  GH VGD+V+  ++
Sbjct: 100 DSMTGLYNRRYFDEALGEYLNAFRSINKPIGMVIFDLDHFKQVNDTHGHDVGDEVLRQVA 159

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218
           + L +       V RLGGEEFA  +   S+++   LA+ +R  +  SQ+ + SG  ++ +
Sbjct: 160 ECLHMFTRYHDVVARLGGEEFAILSPNISDRQLRSLADRIRLAV--SQLTVESGNVALRV 217

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           TISAGIA     E    +  RAD+ LY AK+ GRNRV
Sbjct: 218 TISAGIAIWDGTERGDELYRRADRQLYEAKRQGRNRV 254


>gi|15644342|ref|NP_229394.1| hypothetical protein TM1594 [Thermotoga maritima MSB8]
 gi|4982165|gb|AAD36661.1|AE001804_5 conserved hypothetical protein, GGDEF domain [Thermotoga maritima
            MSB8]
          Length = 1206

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 86/157 (54%), Gaps = 12/157 (7%)

Query: 107  DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
            D L+G+L+   F+  L         Y   LSI+  D D FK+IND FGH  GDK + +L 
Sbjct: 1045 DPLTGVLSRWYFMERLEEEAYKSSRYKSPLSIIMCDADDFKKINDQFGHVAGDKTLGWLG 1104

Query: 160  DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             ++  V      VGR GGEEF  A  G+S +EA I+A  LRK +     N     + HIT
Sbjct: 1105 RKMKSVLRKSDLVGRYGGEEFIIALPGTSLEEAKIVAEKLRKAVMEDPEN-----TYHIT 1159

Query: 220  ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +S G+AE  + E     I RAD+ALY+AK  G+N VV
Sbjct: 1160 LSFGVAEYKNGEDPFETIKRADEALYLAKILGKNSVV 1196


>gi|320155197|ref|YP_004187576.1| GGDEF domain-containing protein [Vibrio vulnificus MO6-24/O]
 gi|319930509|gb|ADV85373.1| GGDEF domain [Vibrio vulnificus MO6-24/O]
          Length = 479

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 90/167 (53%), Gaps = 11/167 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+G  N  +F       I +   +N  LSI+  DID+FKQ ND++GH  GD
Sbjct: 307 LRNLAATDPLTGAFNRRSFMEQAEKSIRTCQRWNCPLSIMILDIDHFKQFNDSYGHAAGD 366

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  L     +       +GRLGGEEFA    G  E+EA  +A  LR ++EN Q++   
Sbjct: 367 LVLVELVKMADLSTREIDIIGRLGGEEFAVVLPGLGEKEAFEVAKRLRSVVENMQVHYEQ 426

Query: 213 GPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVV 256
            P + +TIS G+A     E   P+  ++ +AD+ LY AK  GRN V+
Sbjct: 427 QP-LQMTISIGVATLQPSELNTPLEQLMKQADEGLYYAKAHGRNCVI 472


>gi|262192395|ref|ZP_06050548.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
 gi|262031748|gb|EEY50333.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
          Length = 914

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 64/174 (36%), Positives = 96/174 (55%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIN
Sbjct: 732 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIALLDIDHFKQIN 791

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D + H +GD+ I  +S +L+   G    V R GGEEF    +G  +Q        LR  I
Sbjct: 792 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPQQAWGYF-EKLRCKI 850

Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E  Q+++S+    +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 851 E--QVDLSAVATGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 902


>gi|195953730|ref|YP_002122020.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195933342|gb|ACG58042.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 901

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 91/164 (55%), Gaps = 11/164 (6%)

Query: 101 SQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +LS  D L+G+ N          +++    YN  LS++ FDID+FK IND++GH +GDK
Sbjct: 741 EELSIKDDLTGICNRRCLEDKLEEYLTLAKRYNRPLSVIMFDIDFFKHINDSYGHDIGDK 800

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  +++ ++        + R GGEEF   +  ++ ++A  LA  LRK IEN       G
Sbjct: 801 VLKTIANIVLSNIRATDILARYGGEEFVIISPETTLEDAKALAEKLRKEIEN--FLFEEG 858

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            S  IT S G+     ++   TI+ R D+ALY AK+ GRNRVV 
Sbjct: 859 FS--ITCSFGVTSLNQEDTKETILKRVDEALYKAKREGRNRVVA 900


>gi|327189306|gb|EGE56474.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 355

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/184 (36%), Positives = 100/184 (54%), Gaps = 18/184 (9%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEK-----LSIVFFDIDYFKQ 141
            + KEL   Y RI+     D L+ L N  AF   L + +N        +++  DID FK+
Sbjct: 164 QVRKELD-EYKRIAN---TDSLTRLSNRRAFDDRLAAVFNNPGMRPVTALLLADIDNFKK 219

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GHPVGDK++A ++  +       +FV R GGEEFA    G++ +E A +A  +R+
Sbjct: 220 INDTYGHPVGDKILATVASVIRSNVRRDVFVARAGGEEFALIIEGNTAEEVAAIAERIRR 279

Query: 202 IIE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +E     NS+  ++ GP   IT+S GI    + E    +  RAD ALY AK +GRN +V
Sbjct: 280 TLETTPFKNSRTRVNYGP---ITVSIGICMASNAEDAGELYSRADIALYGAKNAGRNCIV 336

Query: 257 CFSD 260
            + D
Sbjct: 337 LYQD 340


>gi|260221572|emb|CBA30270.1| hypothetical protein Csp_C22710 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 409

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 129/252 (51%), Gaps = 30/252 (11%)

Query: 31  FSIFFSIFIATVIFIANIFLF--YIGLTPFYGLEYIL---VENLSLVIISITISLLL--G 83
            +I+    +A  +F     LF   IG+T  +  E +L   +  L++ +I   +S+L+   
Sbjct: 162 LTIYLRPHVAAALFGVAFVLFSTLIGMTQ-HNPEMLLSNRINGLAVCVIGFCLSVLMWRK 220

Query: 84  YISGSILK--------ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------- 127
           + + ++ K        EL +    + +L+R D L+GL N + F+    S NE        
Sbjct: 221 FTTIAVQKHQLEKAHTELQLKQRELERLTRQDGLTGLFNRNTFVEL--STNELKRAKRQG 278

Query: 128 -KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
              +I+  D+D+FK+IND +GHP GD V+  ++  +V    +   VGRLGGEEF      
Sbjct: 279 SATTILLLDLDHFKRINDTWGHPAGDVVLRHVAQTMVNSVRSTDLVGRLGGEEFIVLLPH 338

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQAL 244
           ++ + +  +A  +R+ +E S I    G  I +T S G++    +E     ++   AD+AL
Sbjct: 339 TTAEASRKIAEKIRQRLEVSDIRW-EGKRIAVTASIGLSGTTAEESREFDSLYTEADKAL 397

Query: 245 YVAKKSGRNRVV 256
           Y+AK+ GRNRV+
Sbjct: 398 YLAKQRGRNRVI 409


>gi|114569827|ref|YP_756507.1| response regulator receiver modulated diguanylate cyclase
           [Maricaulis maris MCS10]
 gi|114340289|gb|ABI65569.1| response regulator receiver modulated diguanylate cyclase
           [Maricaulis maris MCS10]
          Length = 454

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 7/161 (4%)

Query: 102 QLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N           + S  +    +S++  DID+FK IND +GH  GD+V
Sbjct: 286 EMAVTDALTGLHNRRYISSRLRQAMDSASNGGAPVSLLLADIDHFKHINDTYGHDAGDRV 345

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   S +L           R GGEEF     G+   EA I A  LR  I+ S  ++S G 
Sbjct: 346 LRDFSSRLQTGLRALDLAARYGGEEFVVVMPGAGLAEARIAAERLRSSIDGSGFDLSDGT 405

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S+ +T+S GIA+    E +  ++ RAD+ALY AK +GRN+V
Sbjct: 406 SVPVTVSIGIAQAHRGEALDALLRRADEALYAAKTAGRNQV 446


>gi|299135054|ref|ZP_07028245.1| diguanylate cyclase [Afipia sp. 1NLS2]
 gi|298590031|gb|EFI50235.1| diguanylate cyclase [Afipia sp. 1NLS2]
          Length = 417

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 85/157 (54%), Gaps = 9/157 (5%)

Query: 106 IDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+GLLN   F  +     E+       ++++ FDID+FK +ND +GHPVGD V+   
Sbjct: 225 VDPLTGLLNRRGFGEATARMIEREAKAGRSITVMIFDIDHFKSVNDTYGHPVGDDVLKVF 284

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           ++  V        +GR+GGEEF AA L  +  EA + A  +R   E S + I   P +  
Sbjct: 285 ANVAVGALRITDLLGRVGGEEF-AALLPCAMDEALLAAERVRDAFEQSGVAIDGAP-LAT 342

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T+S G+A       +  ++  AD ALY AK+ GRNRV
Sbjct: 343 TVSIGVAGGPANTELDVLMASADTALYRAKRGGRNRV 379


>gi|152990299|ref|YP_001356021.1| hypothetical protein NIS_0550 [Nitratiruptor sp. SB155-2]
 gi|151422160|dbj|BAF69664.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 536

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 84/165 (50%), Gaps = 12/165 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +++  D L+GL N    I  +         Y E   ++  DID+FKQIND +GH +GD
Sbjct: 367 LREMALKDALTGLYNRYKMIEDIEHQIARYKRYKEPFCLIMLDIDHFKQINDTYGHDIGD 426

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KV+   +  L  V  +     R GGEEF      +  +E   +AN L+   E     I  
Sbjct: 427 KVLKESAKILHTVIRSSDVAARWGGEEFMILCPNTHLKEGVAIANRLKDAFEKHNFGIDR 486

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                +T+SAG+ E R   E + T++ R D+ LY AK++GRNRVV
Sbjct: 487 ----RVTVSAGVVEYRNENEDMKTVLKRVDERLYQAKRAGRNRVV 527


>gi|330966211|gb|EGH66471.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 360

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 113/216 (52%), Gaps = 12/216 (5%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L P   L   + +  + + + +   + +G+++  +  +L+   N + +LSR D L+GLLN
Sbjct: 135 LNPVVNLNGNMTQIYACLPVLVIYPIFIGWMNHQVTLKLWEHRNILRKLSRTDSLTGLLN 194

Query: 115 HSAFISSLG---------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           H A+   L          + +++  I   DID+FK IND +GH +GD V+  +S+ L+  
Sbjct: 195 HGAWKDLLDLEFAKSQNQNQHQECVIALIDIDHFKIINDTYGHLMGDTVLQNISEALIEN 254

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                 +GR GG+EF     G+S  +A  +   +R  I+  ++  S    +  ++S GIA
Sbjct: 255 LRDSDLIGRCGGDEFCVILPGTSLLQAREILERMRLAID--ELTYSLHRDLKASLSVGIA 312

Query: 226 ERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260
                 P  S+ ++ AD+ALY+AK +GRNRVV   D
Sbjct: 313 AYSPDLPDASSWLHEADKALYLAKSTGRNRVVSAED 348


>gi|86741218|ref|YP_481618.1| diguanylate cyclase [Frankia sp. CcI3]
 gi|86568080|gb|ABD11889.1| diguanylate cyclase (GGDEF domain) [Frankia sp. CcI3]
          Length = 587

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 91/168 (54%), Gaps = 10/168 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFF--DIDYFKQINDNFGHP 149
           +    +L+  D L+GL N   F         G  +   S+  F  DID+FKQ+ND  GH 
Sbjct: 418 FEETQRLADSDPLTGLANRRHFFEQADALVRGHLHAARSLAAFMIDIDHFKQVNDGHGHA 477

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD V+A ++ ++    G    VGR+GGEEF AA LG     A +LA  LR+ I  S + 
Sbjct: 478 VGDAVLAEVARRVQGTLGPQDIVGRIGGEEF-AAVLGCPAATAGVLAERLRQAIGASPVA 536

Query: 210 ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            + GP + +T+S G+A        +  ++ RAD ALY AK+SGR+RV 
Sbjct: 537 TADGP-LPVTVSVGVAMLNPDDSGLGDLLIRADVALYQAKRSGRDRVA 583


>gi|205374179|ref|ZP_03226978.1| diguanylate cyclase [Bacillus coahuilensis m4-4]
          Length = 340

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 96/172 (55%), Gaps = 13/172 (7%)

Query: 99  RISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ +L+ ID L+ + N +       A +  L +  E+L++V FDID+FKQ+ND +GH  G
Sbjct: 163 QLKELATIDGLTKIWNRTYFMELAEALVDKLHTQQEQLAVVMFDIDHFKQVNDTYGHETG 222

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++  +  +  +    GR GGEEF     G +  EA   +ND+R  I  S+ N  
Sbjct: 223 DYVLEHVASLVKDMLRSEDLFGRYGGEEFIICMAGVTSLEAEERSNDIRLAI--SKFN-Q 279

Query: 212 SGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            G  + ITI++     C   +KE +  +I +AD ALY AK++GRNRV  + D
Sbjct: 280 WGIGVPITITSSFGVACGNINKEELKPLIRKADFALYHAKENGRNRVQIYQD 331


>gi|229917194|ref|YP_002885840.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
 gi|229468623|gb|ACQ70395.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
          Length = 358

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 95/175 (54%), Gaps = 9/175 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           L+  F +     QL+R D L+G+ N       +++L    E+ +++  DID+FK++ND +
Sbjct: 188 LRRHFENVQHQQQLARTDALTGIANRRLLNEAMANLTVEAEEYALILVDIDHFKRVNDTY 247

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD V+  L   LV        VGR GGEEF      ++  E + LA  +R+ +   
Sbjct: 248 GHDVGDDVLRELGMLLVNESDERHLVGRFGGEEFLIVMPHATRNEVSRLAESIREKVSTF 307

Query: 207 QINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFS 259
               S+G ++HIT+S G    CH     I +++  AD+ALY AK+SGRNR +  S
Sbjct: 308 PFETSAG-TLHITVSLGA---CHSNDIEIDSVLKHADEALYHAKESGRNRFILAS 358


>gi|291294812|ref|YP_003506210.1| diguanylate cyclase [Meiothermus ruber DSM 1279]
 gi|290469771|gb|ADD27190.1| diguanylate cyclase [Meiothermus ruber DSM 1279]
          Length = 373

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 93/174 (53%), Gaps = 12/174 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y ++ Q++  D L+ L N  A    L         YN   +++  D+D+FKQIND +GH 
Sbjct: 193 YAQMHQMAHTDALTNLTNRRAMQQKLEGELDRARRYNRPFALLLADLDHFKQINDTYGHS 252

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+V+  ++ +L         + R GGEEF   A  +  Q+A +LA  L   I  S I+
Sbjct: 253 VGDQVLREVAGRLAQHLRESDSLARWGGEEFLILAPETDLQQAYLLAQRLLGAIRESPIS 312

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                 + +T+S G+A     + I+ ++ RAD+A+Y AK  GRN++V   ++E+
Sbjct: 313 -----GVQVTLSLGVACYRQGDSIAALLSRADEAMYRAKAGGRNQIVLEEELED 361


>gi|83593899|ref|YP_427651.1| diguanylate cyclase [Rhodospirillum rubrum ATCC 11170]
 gi|83576813|gb|ABC23364.1| Putative diguanylate cyclase (GGDEF domain) [Rhodospirillum rubrum
           ATCC 11170]
          Length = 397

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 87/165 (52%), Gaps = 12/165 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D ++GL N   F+++        G      +++ FD+D+FKQ+ND+ GH  GD
Sbjct: 218 LRRLADTDQMTGLANRRHFLTASQEAWKLAGRLGRPTALMMFDVDHFKQVNDSQGHAAGD 277

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +  L+  +  V       GR+GGEEFA    G     AA++A  +R+ +  S+     
Sbjct: 278 AALVDLARNVREVLRDIDIFGRMGGEEFAITLPGCDLVAAAVIAERVRRAVAESR---GE 334

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           GP+  ITIS G+      EP  T + RAD  LY AK +GRNRV C
Sbjct: 335 GPA--ITISLGLTILVAGEPFDTALKRADHGLYQAKAAGRNRVCC 377


>gi|315127537|ref|YP_004069540.1| hypothetical protein PSM_A2475 [Pseudoalteromonas sp. SM9913]
 gi|315016051|gb|ADT69389.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 274

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 95/160 (59%), Gaps = 5/160 (3%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +NR++Q   +D L+ + N   F   + G  N   +++  D+D+FK+IND++GH VGDKV+
Sbjct: 116 HNRLAQEFIMDDLTKVYNRRCFYQHVKGVVNNPYTVLIIDLDHFKRINDDYGHDVGDKVL 175

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +D++  +F       R+GGEEF AA L S E +  +  N  + I+E ++  I+    
Sbjct: 176 KQFADKVNRLFKDENIFARIGGEEF-AAYLPSYELDEVL--NFSQTILETAR-TITVQNQ 231

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +T+S GIA R   +    ++ RADQALY AKK+GR+R+
Sbjct: 232 RSLTVSIGIAHRTSDQTFDNVMKRADQALYRAKKAGRDRL 271


>gi|172056241|ref|YP_001812701.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15]
 gi|171988762|gb|ACB59684.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15]
          Length = 366

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 108/223 (48%), Gaps = 12/223 (5%)

Query: 49  FLFYIGLTPFYGLEYI-LVENLSLVIISITIS-----LLLGYISGSILKELFISYNRIS- 101
           F   IG+   Y L  I L+ N     I I+++     L+ G+++  +L EL   +  I  
Sbjct: 136 FELMIGIGIVYSLPGIYLLTNSWTTFIEISLAYIFFNLIAGFVTYHLLTELRRHFENIQY 195

Query: 102 --QLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
             +L+  D L+GL N      SL   GS  E  S++  DID+FK +ND +GH  GD V+ 
Sbjct: 196 QQKLAMTDALTGLANRRRLDDSLSLVGSAEEGYSLILIDIDFFKHVNDTYGHDAGDDVLR 255

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            L   L  +      VGR GGEEF      +S  +A  +A   R  +  +    ++ P +
Sbjct: 256 QLGTTLASLARPDDLVGRYGGEEFLIILPNTSLADAKSIAELARTTVARNLFPTTAVPDL 315

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ITIS GIA           + +AD+ALY +K SGRNR   ++
Sbjct: 316 QITISLGIAHSSSSHTSLEALQQADKALYHSKDSGRNRSTTYT 358


>gi|157373761|ref|YP_001472361.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157316135|gb|ABV35233.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 323

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 114/219 (52%), Gaps = 17/219 (7%)

Query: 57  PFYGLEYILVENLSLVIIS------ITISLLLGYISGSILKELFI--SYNRISQLSRIDC 108
           P  G    + +N++L+ +S        ISL++  ++   + +L +  +  R+  LS+ D 
Sbjct: 101 PITGRADFMYQNVTLLPLSSLTGQITHISLIVYDVTDVAINKLQLKAANERLEHLSQTDG 160

Query: 109 LSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ L N   +   +         Y +K S+V FDID+FK+INDN+GH  GDKVI  +S  
Sbjct: 161 LTQLHNRRHWQMCMQKEFDRHSRYGDKTSLVMFDIDHFKKINDNYGHLAGDKVIQHISHL 220

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L          GR GGEEF+     +  + A   A+ LRK IE S++ +    +I +T+S
Sbjct: 221 LKQSLRETDCAGRYGGEEFSVVLAHTCAKGALNFADRLRKKIEKSEL-VFEKETIKVTVS 279

Query: 222 AGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            GI++   + E     +  AD+ALY AK+SGRN  V + 
Sbjct: 280 MGISDINDQLENSGQWLAYADRALYQAKESGRNNCVIYD 318


>gi|330959761|gb|EGH60021.1| two-component response regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 517

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/176 (38%), Positives = 91/176 (51%), Gaps = 12/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI----VFFDIDYFKQINDN 145
           LK L           R D L+GLLNH   ++S    +   S+    V  DID+FKQ+ND 
Sbjct: 340 LKALISRSKAFDSRMRRDPLTGLLNHGQLMASASRVSASGSVPNTMVMIDIDHFKQVNDT 399

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGHPVGDKV+  L++ L     +  F+GR+GGEEFA   +G+   +A  + + +R++  N
Sbjct: 400 FGHPVGDKVLVGLAEILSDNLRSTDFIGRMGGEEFAVLMVGAPISDARNVIDRIRELFSN 459

Query: 206 SQINI------SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            Q          SG     T SAG+A       IS  +  AD ALY AK  GRNRV
Sbjct: 460 LQFETGLQDQGDSGKWFACTFSAGVALLDGSAAIS--MKAADHALYKAKHGGRNRV 513


>gi|261316078|ref|ZP_05955275.1| diguanylate cyclase [Brucella pinnipedialis M163/99/10]
 gi|261305104|gb|EEY08601.1| diguanylate cyclase [Brucella pinnipedialis M163/99/10]
          Length = 240

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 3/168 (1%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148
           +L  S+  +   +RID ++GLLN  A   ++    S  E  +++  D D+FK IND+FGH
Sbjct: 70  QLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGH 129

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+  
Sbjct: 130 GVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPF 189

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV
Sbjct: 190 HTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 237


>gi|254447598|ref|ZP_05061064.1| signaling protein with membrane-bound sensor domain and ggdef
           domain [gamma proteobacterium HTCC5015]
 gi|198262941|gb|EDY87220.1| signaling protein with membrane-bound sensor domain and ggdef
           domain [gamma proteobacterium HTCC5015]
          Length = 782

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 97/187 (51%), Gaps = 9/187 (4%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLS 130
           +SLL   + G ++    +    + QLS +D L+ + N  + +  L             ++
Sbjct: 594 LSLLAFVLMGYVVSRWSLREAEVRQLSLVDPLTQIHNRLSIMQVLDQALSQHRREGSPIA 653

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +V  DID+FK INDN+GHPVGD+++   +  L         +GR GGEEF     G+   
Sbjct: 654 VVMLDIDHFKAINDNWGHPVGDRILTSAASVLANNLREFDEIGRYGGEEFLLVLQGTDVD 713

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAK 248
            A ++A   R+ +   Q+    G SI ++ S G+A    ++P  I  +I RAD+ALY AK
Sbjct: 714 GAVVMAERCRQSLATIQVLSDEGASIGVSASFGVAASQAQQPTDIEALIQRADRALYRAK 773

Query: 249 KSGRNRV 255
           + GRNRV
Sbjct: 774 EKGRNRV 780



 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 12/171 (7%)

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S  D L+G+ N  +        ++      E L++   D+D+FK+IND +GHP GD  + 
Sbjct: 203 SLTDALTGIHNRRSLFQILDRQVAHAHKQEEPLAVALLDLDHFKRINDEYGHPTGDAALK 262

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             +  L         VGR GGEEF       S  +       LRK +E  +    +G +I
Sbjct: 263 AAAAVLEKGLSEGDSVGRFGGEEFMLVMPNCSRSQCQQRCEALRKSLERVECYSENGEAI 322

Query: 217 HITISAGIAERC--HKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIEN 263
            +  S G+       + P+ +  ++  AD ALY AK +GRN+VV   DI++
Sbjct: 323 ALRGSFGVVWYSGQSQRPLVSDGVVQVADAALYRAKNAGRNQVV-LQDIDD 372


>gi|330819964|ref|YP_004348826.1| Diguanylate cyclase [Burkholderia gladioli BSR3]
 gi|327371959|gb|AEA63314.1| Diguanylate cyclase [Burkholderia gladioli BSR3]
          Length = 505

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 98/187 (52%), Gaps = 15/187 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L++      +++ LSR D L+GLLN  A  ++L          N  +S++F D D+FKQ 
Sbjct: 318 LRDNLRKQQKLTDLSRTDALTGLLNRRALDAALEDEWYRIQRGNSCMSVLFIDADHFKQY 377

Query: 143 NDNFGHPVGDKVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           ND  GH  GD  + FL++   + V   G      R GGEEF A    + E  AA +A  +
Sbjct: 378 NDVHGHARGDTALRFLAECIRKHVRRHGD--IAARYGGEEFVAVLANTDENGAARVAQAI 435

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVC 257
           R+ IE ++++    P    T+S G A      P S   + +RAD ALY AK+ GRNR VC
Sbjct: 436 RQEIETNRLDEFPEPVPAFTVSIGCATGRKGRPASVDALAHRADLALYEAKRRGRNR-VC 494

Query: 258 FSDIENN 264
            + +E++
Sbjct: 495 VASMEDD 501


>gi|213423733|ref|ZP_03356713.1| hypothetical protein Salmonentericaenterica_40358 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 348

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 104/199 (52%), Gaps = 13/199 (6%)

Query: 71  LVIISITISLLLG-YISGSILKELFISYN-------RISQLSRIDCLSGLLNHSAFISSL 122
           LV +++T  L+ G +I      E ++ Y        R+  ++  D L+G  N  +  S L
Sbjct: 149 LVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANRRSMESFL 208

Query: 123 GS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGE 178
           G      E  +++  D+DYFK  NDN+GH  GD  +A ++  +     TP   V R GGE
Sbjct: 209 GDALRQTEPFALIMLDVDYFKNYNDNYGHQAGDACLAKVACVVKRSIRTPADLVARYGGE 268

Query: 179 EFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EF      SS  EAA++A  ++  + E +  +++S  S  +T+S GI      + ++ II
Sbjct: 269 EFVVVLPSSSLNEAALVAKRIQTNLRETALPHVASAVSETVTVSMGITLSTAGDTVTGII 328

Query: 238 YRADQALYVAKKSGRNRVV 256
            RAD+ALY AK+ GRNR V
Sbjct: 329 ARADEALYRAKQQGRNRWV 347


>gi|115525797|ref|YP_782708.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
 gi|115519744|gb|ABJ07728.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
          Length = 260

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 121/232 (52%), Gaps = 19/232 (8%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG----YISGSILKEL 93
             ATV  +A I   ++G  P   +   +V   S +++S+ +S LL     Y S  +L++L
Sbjct: 25  LTATVTSVAVIA--HLGADPSVTVPVGMV-TASAIMVSVVVSTLLSGALSYRSALLLQQL 81

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
             +   + ++SR D L+GLLN   F       +      N ++  +  DID+FK +ND+F
Sbjct: 82  TKAQAELLRVSRTDPLTGLLNRRGFDEAAVAVLQQARQANREVVALMGDIDHFKSVNDHF 141

Query: 147 GHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           GH  GD+V+  +   L     +    V R GGEEFAA  +G S  +A   A  LR++   
Sbjct: 142 GHEFGDRVLCEIGGVLQRFAASHGALVARHGGEEFAALFVGVSAAQAVQYAETLRELCRT 201

Query: 206 S-QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             ++  ++ P   IT+S G+     +  +S+I+  AD+ALY AK+ GR+RVV
Sbjct: 202 EVRLGAATAP---ITLSIGLTSHIGETELSSIMRWADRALYQAKERGRDRVV 250


>gi|78356877|ref|YP_388326.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219282|gb|ABB38631.1| diguanylate cyclase (GGDEF domain) [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 525

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 87/162 (53%), Gaps = 10/162 (6%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N   F + L       G Y+  L+++  DIDYFKQIND FGH  GD V+  L+
Sbjct: 354 DGLTQLHNRRHFDTRLREELDRHGRYSMPLTLMMLDIDYFKQINDRFGHQAGDAVLRELA 413

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L     T  +  R GGEEF A    + EQ+A +LA  LRK IE S++    G +I  T
Sbjct: 414 SVLRETIRTTDYCARYGGEEFVAILPHTDEQQARVLAERLRKNIE-SRVFRHHGKTIQAT 472

Query: 220 ISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +S G+   +     P   ++  AD ALY+AK +GRN V  F+
Sbjct: 473 VSIGLTGFKPGALTPRDELVREADAALYLAKANGRNVVCTFA 514


>gi|309791726|ref|ZP_07686216.1| serine/threonine protein kinase [Oscillochloris trichoides DG6]
 gi|308226219|gb|EFO79957.1| serine/threonine protein kinase [Oscillochloris trichoides DG6]
          Length = 625

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/136 (41%), Positives = 82/136 (60%), Gaps = 3/136 (2%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           N  ++ +F DID+FK +ND FGH VGDKV+ +L+  L  V  + + V R GGEEF   ++
Sbjct: 490 NGNIAAIFIDIDHFKDVNDTFGHGVGDKVLEYLASLLRQVRSSDI-VARYGGEEFVIISI 548

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQAL 244
           G + Q   + A  LR+ +    +N+  G  I ITIS G+A    + E ++ ++  ADQAL
Sbjct: 549 GHTTQHVRLFAERLRQEVAQQPVNLPEG-QIAITISLGVASLTPQIESLAALLRFADQAL 607

Query: 245 YVAKKSGRNRVVCFSD 260
           Y AK SGRNRV  + +
Sbjct: 608 YQAKTSGRNRVCVWGE 623


>gi|156972544|ref|YP_001443451.1| diguanylate cyclase [Vibrio harveyi ATCC BAA-1116]
 gi|156524138|gb|ABU69224.1| hypothetical protein VIBHAR_00176 [Vibrio harveyi ATCC BAA-1116]
          Length = 354

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 97/168 (57%), Gaps = 13/168 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +LS  D L+G+LN  AF++ L          ++ LS +  DID+FK+IND  GH  G
Sbjct: 167 RLKELSETDELTGVLNRRAFLTRLDKAMSSHLRPSQTLSCIMIDIDHFKEINDQVGHFSG 226

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+VI  ++           F+GRLGGEEFA   + +S  +A  +A  +R+ I+N+   + 
Sbjct: 227 DQVIHHVAKICQRAIRGSDFIGRLGGEEFAVILVNTSAIQAYDVAERIREAIQNAPCKV- 285

Query: 212 SGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256
            G  I  T+S G+AE  + E +S+   ++  AD+A+Y +K SGRN+V 
Sbjct: 286 DGIEISTTVSIGVAE--YDEQVSSTTELMVNADKAMYYSKHSGRNQVT 331


>gi|23501935|ref|NP_698062.1| GGDEF domain-containing protein [Brucella suis 1330]
 gi|161619007|ref|YP_001592894.1| diguanylate cyclase [Brucella canis ATCC 23365]
 gi|254704346|ref|ZP_05166174.1| diguanylate cyclase [Brucella suis bv. 3 str. 686]
 gi|23347879|gb|AAN29977.1| GGDEF domain protein [Brucella suis 1330]
 gi|161335818|gb|ABX62123.1| diguanylate cyclase (GGDEF) domain [Brucella canis ATCC 23365]
          Length = 264

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 115/226 (50%), Gaps = 18/226 (7%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG---------YISGSILKELFI-- 95
           ++ LF +G T      +   E   L+ IS+++  LL          ++    LKE +   
Sbjct: 14  SVVLFCVGATSITA--FWSGETPGLMAISLSLGFLLVMIFPFSAFIFLRYDKLKEAYAQL 71

Query: 96  --SYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPV 150
             S+  +   +RID ++GLLN  A   ++    S  E  +++  D D+FK IND+FGH V
Sbjct: 72  EKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGHGV 131

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+  + 
Sbjct: 132 GDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPFHT 191

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV
Sbjct: 192 TEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 237


>gi|195953692|ref|YP_002121982.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195933304|gb|ACG58004.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 610

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 84/159 (52%), Gaps = 11/159 (6%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N       L         Y   LS++ FDID+FK IND FGH VGDKV+  +S
Sbjct: 456 DTLTGIYNRRYLKDKLERHVNLAKRYERPLSVIMFDIDFFKHINDTFGHDVGDKVLIAIS 515

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +           R GGEEF   A  +++++A ILA  LR +I N  ++   G  I++T
Sbjct: 516 KVVSENIRNTDIFARYGGEEFIIVAPETTKEDAKILAEKLRSLIRN--LHFEEG--INVT 571

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            S G+      +   T++ R D ALY AK++GRNRVV  
Sbjct: 572 CSFGVVSLEKPDTKETLLKRVDNALYEAKRTGRNRVVVL 610


>gi|323698965|ref|ZP_08110877.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfovibrio sp.
           ND132]
 gi|323458897|gb|EGB14762.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfovibrio
           desulfuricans ND132]
          Length = 780

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 87/169 (51%), Gaps = 9/169 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
           + +  L+  D L+G  N   F+S L         YN  L ++  DID+FK+IND FGHP 
Sbjct: 613 DELRTLASTDPLTGASNRRQFMSRLSEEFERCKRYNTSLVLLSLDIDHFKRINDTFGHPA 672

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  L         T    GR+GGEEF AA   +        A  LR+ +E  ++  
Sbjct: 673 GDDVLKELVALCRSTLRTTDLFGRVGGEEFQAALTQTRIGAGENTAERLRRRVERCEVK- 731

Query: 211 SSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + G +I  TIS G+ A R     I  ++ RAD ALY AK++GRNRV+  
Sbjct: 732 THGETITFTISIGVTALRPEDGSIEGLLKRADDALYQAKRNGRNRVMVL 780


>gi|89092700|ref|ZP_01165653.1| GGDEF domain protein [Oceanospirillum sp. MED92]
 gi|89083212|gb|EAR62431.1| GGDEF domain protein [Oceanospirillum sp. MED92]
          Length = 322

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 96/180 (53%), Gaps = 11/180 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQIND 144
           EL  +  ++  LSR D L+GL N   +   L +  E+        ++V FDID+FK++ND
Sbjct: 145 ELQQANKKLQALSREDRLTGLFNRGYWEECLNNEFERFNRSQMTSTLVMFDIDHFKRVND 204

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+VI  ++D L         +GR GGEE+ A   G++ + A I A  LR  IE
Sbjct: 205 TYGHQAGDEVIRVVADTLREQARKTDILGRYGGEEYGAILTGTNGENAMIFAERLRARIE 264

Query: 205 NSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            S +       +  TIS G++E    H  P    + ++DQALY +K+SGRN V  F + E
Sbjct: 265 -SLVVPYGEHQLKFTISIGVSELTYEHDSP-KEWLEQSDQALYKSKQSGRNWVTLFGESE 322


>gi|271501959|ref|YP_003334985.1| diguanylate cyclase [Dickeya dadantii Ech586]
 gi|270345514|gb|ACZ78279.1| diguanylate cyclase [Dickeya dadantii Ech586]
          Length = 514

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 88/164 (53%), Gaps = 7/164 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           R+S  +  D LSG+LN    + S+    G Y +K+S++  DID+FK IND+FGH VGD V
Sbjct: 341 RLSSEAHTDPLSGMLNRRGMLESMEEIRGEY-KKVSVIAIDIDHFKSINDSFGHDVGDMV 399

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           I  LS Q+   F     V R+GGEEF     G+    A ++A  LR  + N+ + +    
Sbjct: 400 IRKLSQQIRKNFRKTDLVCRIGGEEFLILLPGADIHVATVIAERLRNNVANT-VYVPGSQ 458

Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +TIS G+      K  +   I  AD ALY AK  GRN+VV 
Sbjct: 459 HHQVTISIGVTTFNPQKSALDIAIKTADNALYKAKNGGRNQVVV 502


>gi|225850486|ref|YP_002730720.1| signal transduction response regulator [Persephonella marina EX-H1]
 gi|225646402|gb|ACO04588.1| signal transduction response regulator [Persephonella marina EX-H1]
          Length = 331

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 90/161 (55%), Gaps = 13/161 (8%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+GL+N   F       I      N   S+++ D+D FK INDN+GH VGD V+  +
Sbjct: 169 MDFLTGLVNRRRFERALEDAIKDFEKRNYPFSLIYVDVDNFKDINDNYGHSVGDIVLKEI 228

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS--- 215
           +            +GR+GGEEFA    G   ++A  +A  LR II+N +I I  GP    
Sbjct: 229 ATIFKFYLRANTIIGRIGGEEFAILLPGVEIEDAVKIAERLRNIIQNREIRI--GPDRDE 286

Query: 216 -IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + +T S G+ +    + +++I++RAD A+Y AKK+G+N+V
Sbjct: 287 ILRVTASFGVTQVKKGDTVNSILHRADTAMYRAKKTGKNKV 327


>gi|298490636|ref|YP_003720813.1| response regulator receiver modulated diguanylate cyclase ['Nostoc
           azollae' 0708]
 gi|298232554|gb|ADI63690.1| response regulator receiver modulated diguanylate cyclase ['Nostoc
           azollae' 0708]
          Length = 317

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 95/177 (53%), Gaps = 9/177 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+E      ++  L+  D L+G+ N           I     YN   +++  DID+FK
Sbjct: 137 NLLQEQVELVKQLETLANTDPLTGVWNRRYLLMIAEQEIKRSQLYNFSFAVLLIDIDHFK 196

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH +GD VI F++  ++    +    GR GGEEF A    +   EA I+A  +R
Sbjct: 197 KINDTYGHSIGDDVIIFMTKTVLYHLQSTDCFGRFGGEEFVALLPETDMDEAMIVAECIR 256

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + I+N  I       + ITIS G++  R   + I +I+ RADQALY AK  GRNRV+
Sbjct: 257 ENIKNQYITFEEQ-KVSITISIGVSSYRTGDKNIDSILRRADQALYQAKHEGRNRVI 312


>gi|260566406|ref|ZP_05836876.1| diguanylate cyclase [Brucella suis bv. 4 str. 40]
 gi|261755019|ref|ZP_05998728.1| diguanylate cyclase [Brucella suis bv. 3 str. 686]
 gi|260155924|gb|EEW91004.1| diguanylate cyclase [Brucella suis bv. 4 str. 40]
 gi|261744772|gb|EEY32698.1| diguanylate cyclase [Brucella suis bv. 3 str. 686]
          Length = 255

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 115/226 (50%), Gaps = 18/226 (7%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG---------YISGSILKELFI-- 95
           ++ LF +G T      +   E   L+ IS+++  LL          ++    LKE +   
Sbjct: 5   SVVLFCVGATSITA--FWSGETPGLMAISLSLGFLLVMIFPFSAFIFLRYDKLKEAYAQL 62

Query: 96  --SYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPV 150
             S+  +   +RID ++GLLN  A   ++    S  E  +++  D D+FK IND+FGH V
Sbjct: 63  EKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGHGV 122

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+  + 
Sbjct: 123 GDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPFHT 182

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV
Sbjct: 183 TEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 228


>gi|89897543|ref|YP_521030.1| hypothetical protein DSY4797 [Desulfitobacterium hafniense Y51]
 gi|89336991|dbj|BAE86586.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 410

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 97/177 (54%), Gaps = 11/177 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDID 137
           S  + +ELF S   +  L+  D L+G+ N    ++ LG+         N   S++ FDID
Sbjct: 214 SQRLAQELFESQKELEDLATTDPLTGISNRLK-LNELGNNEMIRSRRLNHPFSVIVFDID 272

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK++ND  GHP+GDK++  L+ ++        F GRLGG+EF      +S Q+   +A 
Sbjct: 273 HFKEVNDTCGHPIGDKLLVELTQKIKAEIRDIDFFGRLGGDEFVLLFPETSIQKCHAVAE 332

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253
            LR++  +  +       +H++IS GIAE   ++  I  ++ RAD+ LY AK SGRN
Sbjct: 333 RLRQVTNDVALQFED-IKVHVSISLGIAEMTLEDSTIEDLLKRADENLYKAKHSGRN 388


>gi|294852356|ref|ZP_06793029.1| GGDEF domain-containing protein [Brucella sp. NVSL 07-0026]
 gi|294820945|gb|EFG37944.1| GGDEF domain-containing protein [Brucella sp. NVSL 07-0026]
          Length = 266

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 3/168 (1%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148
           +L  S+  +   +RID ++GLLN  A   ++    S  E  +++  D D+FK IND+FGH
Sbjct: 72  QLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGH 131

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+  
Sbjct: 132 GVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPF 191

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV
Sbjct: 192 HTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 239


>gi|163782872|ref|ZP_02177868.1| hypothetical protein HG1285_16091 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881993|gb|EDP75501.1| hypothetical protein HG1285_16091 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 475

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 90/161 (55%), Gaps = 8/161 (4%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F+ +  +       Y E LS++  DID FK INDN+GH VGD V+  L+
Sbjct: 310 DPLTGLNNRRFFMENARTIIDLSKRYREPLSLLMMDIDNFKSINDNYGHDVGDLVLKKLA 369

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + +     T     R GGEEF      + E+ A ++A  +R    NS + +  G  I  +
Sbjct: 370 EVIRKNVRTSDIPARFGGEEFVVLLPRTDEKGALMVAERIRNEFRNSSVKV-DGKDIWTS 428

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +S G++    ++ I ++I +AD+ALY AK+SG++RVV + +
Sbjct: 429 VSIGLSVLSEEDDIDSLIKKADEALYQAKRSGKDRVVIYRE 469


>gi|253997289|ref|YP_003049353.1| PAS/PAC/GAF sensor-containing diguanylate cyclase [Methylotenera
           mobilis JLW8]
 gi|253983968|gb|ACT48826.1| diguanylate cyclase with PAS/PAC and GAF sensors [Methylotenera
           mobilis JLW8]
          Length = 591

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 88/164 (53%), Gaps = 8/164 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + + +RID L+G+ N   F       I     Y+  LS    DID FKQ+ND +GH  GD
Sbjct: 423 LKRQARIDFLTGVSNRRYFMEQAEQEIQRTSRYDTPLSFFMLDIDLFKQVNDTYGHKSGD 482

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++            +GR+GGEEFA     + + +AA +A  LR ++ + ++   +
Sbjct: 483 IVLKRMASVCRETLREIDIIGRVGGEEFAILLPETDKAQAAEVAERLRSVLADEKVPTEA 542

Query: 213 GPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255
           G  I  T+S G+A R   ++ I  ++  AD+ALY AKK GRNRV
Sbjct: 543 GAPIQFTVSIGVASRVSSQDNIDMLLNLADEALYQAKKYGRNRV 586


>gi|329910341|ref|ZP_08275285.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327546203|gb|EGF31245.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 439

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 96/177 (54%), Gaps = 14/177 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           +E+  +Y R +     D L+GL N  AF  +     E+       LS++ FD D+FK IN
Sbjct: 257 REVSENYRRATA---CDHLTGLANRHAFFDAAAIELERMRRVPRSLSLILFDADFFKSIN 313

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHP GD V+  L+  +   F     V R+GGEEFA     ++ + A ++A  LR+ +
Sbjct: 314 DRYGHPAGDVVLRELATAMKKTFRQIDMVARVGGEEFAILLPSTNLEGAMLVAERLREAV 373

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCF 258
             + + I  G  I  T+S G+A   H+    +  ++ RADQALY AK SGRNR+V +
Sbjct: 374 AATVLQI-DGTKIKFTVSGGVAT-MHESVLGLDALMKRADQALYAAKTSGRNRIVSW 428


>gi|17987212|ref|NP_539846.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 1
           str. 16M]
 gi|260564059|ref|ZP_05834545.1| diguanylate cyclase [Brucella melitensis bv. 1 str. 16M]
 gi|260754794|ref|ZP_05867142.1| diguanylate cyclase [Brucella abortus bv. 6 str. 870]
 gi|260883811|ref|ZP_05895425.1| diguanylate cyclase [Brucella abortus bv. 9 str. C68]
 gi|261214045|ref|ZP_05928326.1| diguanylate cyclase [Brucella abortus bv. 3 str. Tulya]
 gi|265991139|ref|ZP_06103696.1| diguanylate cyclase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994975|ref|ZP_06107532.1| diguanylate cyclase [Brucella melitensis bv. 3 str. Ether]
 gi|265999459|ref|ZP_05466481.2| diguanylate cyclase [Brucella melitensis bv. 2 str. 63/9]
 gi|17982883|gb|AAL52110.1| diguanylate cyclase/phosphodiesterase domain 1 (ggdef) [Brucella
           melitensis bv. 1 str. 16M]
 gi|260154075|gb|EEW89167.1| diguanylate cyclase [Brucella melitensis bv. 1 str. 16M]
 gi|260674902|gb|EEX61723.1| diguanylate cyclase [Brucella abortus bv. 6 str. 870]
 gi|260873339|gb|EEX80408.1| diguanylate cyclase [Brucella abortus bv. 9 str. C68]
 gi|260915652|gb|EEX82513.1| diguanylate cyclase [Brucella abortus bv. 3 str. Tulya]
 gi|262766088|gb|EEZ11877.1| diguanylate cyclase [Brucella melitensis bv. 3 str. Ether]
 gi|263001923|gb|EEZ14498.1| diguanylate cyclase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094093|gb|EEZ18015.1| diguanylate cyclase [Brucella melitensis bv. 2 str. 63/9]
          Length = 255

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 3/168 (1%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148
           +L  S+  +   +RID ++GLLN  A   ++    S  E  +++  D D+FK IND+FGH
Sbjct: 61  QLEKSHVELQARARIDHMTGLLNREALFETMKISRSRIETGTLLVIDADHFKAINDSFGH 120

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+  
Sbjct: 121 GVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPF 180

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV
Sbjct: 181 HTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 228


>gi|91977180|ref|YP_569839.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91683636|gb|ABE39938.1| diguanylate cyclase [Rhodopseudomonas palustris BisB5]
          Length = 411

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 86/162 (53%), Gaps = 9/162 (5%)

Query: 106 IDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+GL N   F  + G   E+       ++++ FD+D+FK IND FGHP GD+VI   
Sbjct: 220 LDPLTGLFNRRGFSEATGRMIEREAEAGRPVTVMIFDLDHFKSINDRFGHPAGDEVIKLF 279

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  +          GR+GGEEF AA L  S +EA   A  +R+  E   + +   P I  
Sbjct: 280 ATIVSGSLRMSDLCGRIGGEEF-AALLPCSIEEAMTAAERVREAFEGCGLEVDGAP-IAT 337

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           T+S G+A       +  ++  AD ALY AK+ GRNRVV  ++
Sbjct: 338 TVSIGVAGGPANIELEVLLAAADTALYQAKRGGRNRVVATAE 379


>gi|307720349|ref|YP_003891489.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978442|gb|ADN08477.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica
           DSM 16294]
          Length = 422

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 89/166 (53%), Gaps = 11/166 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ +L+ ID L+ + N           I+    Y E   I  FDID FK +ND +GH  G
Sbjct: 260 KLKKLATIDSLTKIYNRYKIDEAINIQIARYRRYKEPFCIFMFDIDNFKTVNDTYGHDAG 319

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  LS  +     T    GR GGEEF      +S++EA ++   LRKI+E S I+  
Sbjct: 320 DRVLKALSRLVSNHIRTTDIFGRWGGEEFVIILENTSKEEAFVITEKLRKIVEVSVID-- 377

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                 ITIS G+A+    E    ++ +AD+ALY AK++GRN+VV 
Sbjct: 378 --GKYKITISIGVAQYEESESREELVKKADKALYRAKENGRNQVVA 421


>gi|300692375|ref|YP_003753370.1| hypothetical protein RPSI07_2743 [Ralstonia solanacearum PSI07]
 gi|299079435|emb|CBJ52108.2| conserved exported protein of unknown function, GGDEF domain
           [Ralstonia solanacearum PSI07]
          Length = 592

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 15/183 (8%)

Query: 90  LKELFISYNR------ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136
           L+ + + + R      ++ ++  D L+ LLN  AF         + G+  ++++++ FD+
Sbjct: 391 LERMRLEHERARLMEELATMAETDSLTQLLNRRAFETRARAMCEARGTEAQRIALIMFDV 450

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND +GH  GD+ +  ++D     +     V R+GGEEFA  AL  +   A +LA
Sbjct: 451 DHFKRINDTYGHAAGDEALRTVADLCRAHWRQSDIVARIGGEEFAVVALVDTATHARVLA 510

Query: 197 NDLRKIIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +R+ I  +++   S P   +T S G  +A       +  ++ RAD  LY AK +GRNR
Sbjct: 511 ERMRQAIAGARVPAGSAPEHGMTASFGVAVASVADAPELEALLRRADHLLYQAKLAGRNR 570

Query: 255 VVC 257
           V+ 
Sbjct: 571 VLA 573


>gi|156740753|ref|YP_001430882.1| diguanylate cyclase [Roseiflexus castenholzii DSM 13941]
 gi|156232081|gb|ABU56864.1| diguanylate cyclase [Roseiflexus castenholzii DSM 13941]
          Length = 680

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 94/164 (57%), Gaps = 12/164 (7%)

Query: 106 IDCLSGLLNHSAFISS-----LGSYN--EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+G+ N  +F  +     L S      L+++ FDID+FK +ND +GH VGD+ +  L
Sbjct: 511 IDELTGVWNRRSFFENARREFLRSQRTLRPLAVLMFDIDHFKSVNDTYGHAVGDQALRDL 570

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +++          +GR GGEEFA A   +    A  +A  LR  +EN+    + G SI +
Sbjct: 571 AERCRNQLRGIDIIGRYGGEEFAVALPDTDIDAAEHIAERLRTAVENTPFATAQG-SISL 629

Query: 219 TISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFS 259
           TIS G+A  CH +  +T   II RAD+ALY+AK+SGRN V  +S
Sbjct: 630 TISIGVAV-CHPDDQTTLDAIIDRADRALYLAKRSGRNSVRVWS 672


>gi|148559944|ref|YP_001258991.1| GGDEF domain-containing protein [Brucella ovis ATCC 25840]
 gi|148371201|gb|ABQ61180.1| GGDEF domain protein [Brucella ovis ATCC 25840]
          Length = 264

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 3/168 (1%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148
           +L  S+  +   +RID ++GLLN  A   ++    S  E  +++  D D+FK IND+FGH
Sbjct: 70  QLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGH 129

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+  
Sbjct: 130 GVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTSF 189

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV
Sbjct: 190 HTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 237


>gi|86750103|ref|YP_486599.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
 gi|86573131|gb|ABD07688.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
          Length = 352

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 94/179 (52%), Gaps = 9/179 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L  S   IS  S  D L+GL N   F       + S       LS++  DID+FK  NDN
Sbjct: 164 LQASLEAISAESLTDPLTGLGNRKHFDRVVTEAVRSATVSRLPLSLLMMDIDHFKSFNDN 223

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD+V+  +   L     T     R GGEEFA     +  ++A ++A+D+R+++ +
Sbjct: 224 YGHLTGDQVLRLVGMTLKQSIKTKNVPARYGGEEFAVVLPDTPLRQALMVADDIRRVVMS 283

Query: 206 SQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            ++   S   I   +T+SAG++     +    +I RAD  LY AK++GRNRV+C +D E
Sbjct: 284 KELKKKSTGEILGRVTLSAGVSTLKPDDDADALIERADACLYSAKRNGRNRVICETDPE 342


>gi|225852560|ref|YP_002732793.1| GGDEF domain-containing protein [Brucella melitensis ATCC 23457]
 gi|254689285|ref|ZP_05152539.1| GGDEF domain protein [Brucella abortus bv. 6 str. 870]
 gi|254693769|ref|ZP_05155597.1| GGDEF domain protein [Brucella abortus bv. 3 str. Tulya]
 gi|256044716|ref|ZP_05447620.1| GGDEF domain protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113608|ref|ZP_05454428.1| GGDEF domain protein [Brucella melitensis bv. 3 str. Ether]
 gi|256257535|ref|ZP_05463071.1| GGDEF domain protein [Brucella abortus bv. 9 str. C68]
 gi|297248377|ref|ZP_06932095.1| GGDEF domain-containing protein [Brucella abortus bv. 5 str. B3196]
 gi|225640925|gb|ACO00839.1| GGDEF domain protein [Brucella melitensis ATCC 23457]
 gi|297175546|gb|EFH34893.1| GGDEF domain-containing protein [Brucella abortus bv. 5 str. B3196]
 gi|326409078|gb|ADZ66143.1| GGDEF domain-containing protein [Brucella melitensis M28]
 gi|326538784|gb|ADZ86999.1| GGDEF domain protein [Brucella melitensis M5-90]
          Length = 264

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 3/168 (1%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148
           +L  S+  +   +RID ++GLLN  A   ++    S  E  +++  D D+FK IND+FGH
Sbjct: 70  QLEKSHVELQARARIDHMTGLLNREALFETMKISRSRIETGTLLVIDADHFKAINDSFGH 129

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+  
Sbjct: 130 GVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPF 189

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV
Sbjct: 190 HTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 237


>gi|222099839|ref|YP_002534407.1| Diguanylate cyclase and serine/threonine protein kinase with TPR
            repeats [Thermotoga neapolitana DSM 4359]
 gi|221572229|gb|ACM23041.1| Diguanylate cyclase and serine/threonine protein kinase with TPR
            repeats [Thermotoga neapolitana DSM 4359]
          Length = 1178

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 63/157 (40%), Positives = 86/157 (54%), Gaps = 12/157 (7%)

Query: 107  DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
            D L+G+L+   F+  L         Y   LS++  DID FK+IND FGH  GD  + ++ 
Sbjct: 1017 DSLTGVLSRWYFMERLEEEAYKSTRYRMPLSLIMCDIDDFKKINDQFGHMSGDSALRWIG 1076

Query: 160  DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +L         VGR GGEEF  A  G+S +EA ++A  LR  I+    N+      HIT
Sbjct: 1077 KKLFSSLRKSDLVGRYGGEEFVVALPGTSLKEARLVAEKLRNSIKTDPENLH-----HIT 1131

Query: 220  ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +S G+AE    E I   I RAD+ALY+AK  G++RVV
Sbjct: 1132 VSFGVAEYIPGESIFETIRRADEALYMAKSLGKDRVV 1168


>gi|115361086|ref|YP_778223.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
 gi|115286414|gb|ABI91889.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
          Length = 506

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 92/174 (52%), Gaps = 12/174 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPVG 151
           ++ L+R D L+GL N  A  ++L    E+L        S++F D D+FKQ ND +GH  G
Sbjct: 328 LTDLTRTDPLTGLHNRRALDAALADEWERLQRGSDGSLSVLFIDADHFKQYNDRYGHAQG 387

Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209
           D  + FL++ +            R GGEEF A    + E+ A  +A  +R  +E +Q++ 
Sbjct: 388 DTALRFLAECIRAHTRRRGDLAARYGGEEFVAVLPDTDERGAQQVAEAIRHAVERNQLDG 447

Query: 210 -ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             ++ P+  ++I      R     +  + ++AD ALY AK+ GRNR VC +D+E
Sbjct: 448 FDATMPAFTVSIGCATGHRARPPSMHALTHQADLALYAAKRQGRNR-VCVADVE 500


>gi|301061890|ref|ZP_07202620.1| diguanylate cyclase (GGDEF) domain protein [delta proteobacterium
           NaphS2]
 gi|300443994|gb|EFK08029.1| diguanylate cyclase (GGDEF) domain protein [delta proteobacterium
           NaphS2]
          Length = 789

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 97/179 (54%), Gaps = 10/179 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
            G + +E+  +  +IS+++ +D L+GL N   F+ +L         + + LS+   DID 
Sbjct: 609 KGKLKREIRSAQRKISEMATLDELTGLYNRRYFMEALDRERARAERHQKALSLCMLDIDL 668

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++NDN GH  GD V+A + + +        F  R GGEEFA     +  + A +    
Sbjct: 669 FKKVNDNLGHTAGDLVLANMGEIIREWSRQTDFPCRYGGEEFAVILPETDLEGARVACER 728

Query: 199 LRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRV 255
           LR  +  S++   +GP I +T+S GI E     K+ +  +I RAD+A Y AK++GRNRV
Sbjct: 729 LRHKVAESRVEWRTGP-IRVTVSIGITENRIGIKDSLRKLIDRADEARYHAKETGRNRV 786


>gi|34498707|ref|NP_902922.1| hypothetical protein CV_3252 [Chromobacterium violaceum ATCC 12472]
 gi|34104558|gb|AAQ60916.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 573

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 93/169 (55%), Gaps = 12/169 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           + ++++SRID L+G+ N  AF       I+  G   E  +++ FDID+FKQ+ND +GH  
Sbjct: 403 DELTEMSRIDFLTGITNRRAFTQAAHAEIARAGLARESATLILFDIDHFKQVNDLYGHDC 462

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILANDLRKIIENSQI 208
           GD V+  ++  +  V       GR GGEEF   A   G+S  EA  LA  LR  I  S  
Sbjct: 463 GDAVLVHVAAIVERVCREGDLAGRYGGEEFVVLACYRGASNGEA--LAERLRAAIAESPC 520

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
            + SG  + +T S G+A      P +  ++  AD+ALY AK+ GRNRV+
Sbjct: 521 LLPSGQKLAVTASFGVATLGEAAPSLERLLQAADRALYAAKRLGRNRVM 569


>gi|157691645|ref|YP_001486107.1| ABC transporter ATP-binding protein [Bacillus pumilus SAFR-032]
 gi|157680403|gb|ABV61547.1| ABC superfamily ATP binding cassette transporter, binding protein
           [Bacillus pumilus SAFR-032]
          Length = 361

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 88/158 (55%), Gaps = 9/158 (5%)

Query: 107 DCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+G+LN        + AF         ++S+++ DIDYFK IND +GH  GD V+  +
Sbjct: 195 DFLTGVLNKRKFDEVLNDAFSMKFKHPTHQMSLIYLDIDYFKSINDQYGHHEGDMVLKEI 254

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +L+    +  ++GR+GGEEFA      + ++   +A  LR+ I +  + + +G SIHI
Sbjct: 255 GKRLIKNTRSSDYIGRIGGEEFAVFLPNCTVEKTWQIAERLRRKIADQPVYLQNGMSIHI 314

Query: 219 TISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255
           T+S G A      P I  +   ADQ LY AK+SGRN+V
Sbjct: 315 TVSLGCAYYSGTSPDIKQLPIIADQELYKAKQSGRNQV 352


>gi|261822226|ref|YP_003260332.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
 gi|261606239|gb|ACX88725.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
          Length = 490

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 91/165 (55%), Gaps = 8/165 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAF---ISSLGS----YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ Q++  D L+GL+N  AF      LG+     ++ LSI+  DID+FK+IND +GH VG
Sbjct: 324 RLEQMATTDKLTGLMNRQAFDYLFHRLGTKSVLQHKSLSILLIDIDHFKKINDQYGHNVG 383

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  +S  L     +     R GGEEF           A   A  LR+ IE + +   
Sbjct: 384 DLVLQEISALLSTNTRSSDRSCRWGGEEFVILLDNCDINAAQQRAEALRQSIEITHLPYR 443

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G +I +T+S G+AE    E +S +I RAD ALY AK+ GRNRVV
Sbjct: 444 EG-TIKVTVSCGVAEYRAGETLSMLINRADIALYQAKQQGRNRVV 487


>gi|306843929|ref|ZP_07476524.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1]
 gi|306275684|gb|EFM57408.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1]
          Length = 264

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 92/168 (54%), Gaps = 3/168 (1%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148
           +L  S+  +   +RID ++GLLN  A   ++    S  E  +++  D D+FK IND FGH
Sbjct: 70  QLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDTFGH 129

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+  
Sbjct: 130 GVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPF 189

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV
Sbjct: 190 HTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 237


>gi|219670664|ref|YP_002461099.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2]
 gi|219540924|gb|ACL22663.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2]
          Length = 407

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 97/177 (54%), Gaps = 11/177 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDID 137
           S  + +ELF S   +  L+  D L+G+ N    ++ LG+         N   S++ FDID
Sbjct: 211 SQRLAQELFESQKELEDLATTDPLTGISNRLK-LNELGNNEMIRSRRLNHPFSVIVFDID 269

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK++ND  GHP+GDK++  L+ ++        F GRLGG+EF      +S Q+   +A 
Sbjct: 270 HFKEVNDTCGHPIGDKLLVELTQKIKAEIRDIDFFGRLGGDEFVLLFPETSIQKCHAVAE 329

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253
            LR++  +  +       +H++IS GIAE   ++  I  ++ RAD+ LY AK SGRN
Sbjct: 330 RLRQVTNDVALQFED-IKVHVSISLGIAEMTLEDSTIEDLLKRADENLYKAKHSGRN 385


>gi|254719129|ref|ZP_05180940.1| GGDEF domain protein [Brucella sp. 83/13]
 gi|265984124|ref|ZP_06096859.1| diguanylate cyclase [Brucella sp. 83/13]
 gi|306838414|ref|ZP_07471259.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653]
 gi|264662716|gb|EEZ32977.1| diguanylate cyclase [Brucella sp. 83/13]
 gi|306406554|gb|EFM62788.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653]
          Length = 264

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 3/168 (1%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148
           +L  S+  +   +RID ++GLLN  A   ++    S  E  +++  D D+FK IND+FGH
Sbjct: 70  QLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGH 129

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+  
Sbjct: 130 GVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPF 189

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV
Sbjct: 190 HTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 237


>gi|254701804|ref|ZP_05163632.1| GGDEF domain protein [Brucella suis bv. 5 str. 513]
 gi|254710139|ref|ZP_05171950.1| GGDEF domain protein [Brucella pinnipedialis B2/94]
 gi|254714138|ref|ZP_05175949.1| GGDEF domain protein [Brucella ceti M644/93/1]
 gi|254716804|ref|ZP_05178615.1| GGDEF domain protein [Brucella ceti M13/05/1]
 gi|256031634|ref|ZP_05445248.1| GGDEF domain protein [Brucella pinnipedialis M292/94/1]
 gi|256061148|ref|ZP_05451302.1| GGDEF domain protein [Brucella neotomae 5K33]
 gi|256159776|ref|ZP_05457519.1| GGDEF domain protein [Brucella ceti M490/95/1]
 gi|256255034|ref|ZP_05460570.1| GGDEF domain protein [Brucella ceti B1/94]
 gi|256369482|ref|YP_003106990.1| GGDEF domain protein [Brucella microti CCM 4915]
 gi|260168763|ref|ZP_05755574.1| GGDEF domain protein [Brucella sp. F5/99]
 gi|255999642|gb|ACU48041.1| GGDEF domain protein [Brucella microti CCM 4915]
          Length = 264

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 3/168 (1%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148
           +L  S+  +   +RID ++GLLN  A   ++    S  E  +++  D D+FK IND+FGH
Sbjct: 70  QLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGH 129

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+  
Sbjct: 130 GVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPF 189

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV
Sbjct: 190 HTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 237


>gi|225627531|ref|ZP_03785568.1| GGDEF domain protein [Brucella ceti str. Cudo]
 gi|225617536|gb|EEH14581.1| GGDEF domain protein [Brucella ceti str. Cudo]
          Length = 266

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 3/168 (1%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148
           +L  S+  +   +RID ++GLLN  A   ++    S  E  +++  D D+FK IND+FGH
Sbjct: 72  QLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGH 131

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+  
Sbjct: 132 GVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPF 191

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV
Sbjct: 192 HTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 239


>gi|260221672|emb|CBA30470.1| hypothetical protein Csp_C23710 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 382

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 90/167 (53%), Gaps = 12/167 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
           NR+  L+  D L+GL N    + +L           + +S++  D+DYFK IND +GH  
Sbjct: 216 NRL--LAMQDELTGLSNRRFIMEALALQLAQARRNGKPVSVLMIDVDYFKSINDTYGHLS 273

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  L+  L          GR GGEEF      +    A ILA +LR  +E+++ + 
Sbjct: 274 GDRVLRNLATSLRSRLRAQDMAGRWGGEEFLVVLPDTDAAGATILAGNLRAEVEDARWSA 333

Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255
             G SI +T+S G+   C    E + T+I  ADQALY AK++GRNRV
Sbjct: 334 QDGRSIPLTLSIGV-HTCDSATEELDTVISAADQALYRAKQAGRNRV 379


>gi|116332510|ref|YP_802227.1| GGDEF family protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116127377|gb|ABJ77469.1| GGDEF family protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 535

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 98/182 (53%), Gaps = 19/182 (10%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEK-LSIVFFDIDYFKQINDNFGH 148
           S N++++L   D L+G+ N   F+       ++G+ + K  +I+  DID+FKQ+ND FGH
Sbjct: 359 SMNQVAKLIHTDPLTGIWNRRGFLKLTQRSLTIGNRHGKDWTILLVDIDHFKQVNDKFGH 418

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GDK +  ++  L         V R GGEEFA    G  ++ +  +A DLRK +EN Q+
Sbjct: 419 DTGDKTLIKVAQVLSRSIRQTDAVCRWGGEEFAIFLFGVGQKASTDIAEDLRKEVEN-QV 477

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF-------SDI 261
            +  G    +T+S G+++      +      ADQALY AK SGRNRV  F       SD+
Sbjct: 478 RLDDGNP--VTLSIGVSQGTLD--LEEAFVNADQALYRAKSSGRNRVCAFDPKVFSHSDL 533

Query: 262 EN 263
           +N
Sbjct: 534 KN 535


>gi|242278391|ref|YP_002990520.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfovibrio
           salexigens DSM 2638]
 gi|242121285|gb|ACS78981.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfovibrio
           salexigens DSM 2638]
          Length = 635

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 88/166 (53%), Gaps = 8/166 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+G  N   F+S        L  Y  +L ++  DID+FK IND +GH VGD
Sbjct: 466 VKRLASTDYLTGAHNRRHFMSRAETELDRLTRYGGELYLMMLDIDHFKNINDTYGHSVGD 525

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  +    +    T    GRLGGEEFAA  +  S   A  +A  LR+ IE+ ++ I  
Sbjct: 526 VVLKEMVKCCIETLRTSDVFGRLGGEEFAALLVHGSIDSAIQVAERLREAIEDMEVRIGR 585

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              + +T+S G+   C  E I   +  AD+ LY AK+ GRNRVV +
Sbjct: 586 -HVVKLTVSIGLTMVCADEDIEIALKHADKCLYQAKEQGRNRVVSY 630


>gi|312881671|ref|ZP_07741449.1| GGDEF family protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370734|gb|EFP98208.1| GGDEF family protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 347

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 106/205 (51%), Gaps = 15/205 (7%)

Query: 65  LVENLSLVIISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           LV N SLV ++I       + +  +L+ +  +S   + QL+  D L+G+ N  A + +  
Sbjct: 146 LVINFSLVFVAI-------WATSHVLEVKRRLSETSLGQLASRDALTGVYNRHALVHNYD 198

Query: 124 SYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
            Y        LS++  D+DYFK +ND FGH VGD+V+   +  L+        V R+GGE
Sbjct: 199 HYRRSGSKIPLSLLILDLDYFKAVNDKFGHDVGDRVLV-ETATLIDGLSGEHLVYRIGGE 257

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EF  A   +   EA   A  LR+ IE+   N    P I +T S G+    H   + +++ 
Sbjct: 258 EFCIALHDTGSNEARDKAEQLRQAIESYIFNNEENP-IALTASIGVYYCNHFSNLESVLK 316

Query: 239 RADQALYVAKKSGRNRVVCFSDIEN 263
            AD+ LY AKK+GRN+V+ + D E 
Sbjct: 317 AADKELYKAKKNGRNQVMVYCDDEQ 341


>gi|190890170|ref|YP_001976712.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190695449|gb|ACE89534.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 392

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 100/193 (51%), Gaps = 7/193 (3%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS- 124
            E+LSL +  I     +G +S ++ +    + +R+  ++  D L+GLLN  A     G+ 
Sbjct: 186 AEDLSLAV-CIAGMTGIGALSLALHQWRLAARHRLEAIT--DPLTGLLNRRAVFDQHGTR 242

Query: 125 -YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                 +I+ FDID+FK +ND FGH  GD+VI   +++L           RLGGEEFA  
Sbjct: 243 PMGTTTAIIVFDIDHFKSVNDRFGHAAGDRVITVFAEELRANCSAGDTAARLGGEEFALV 302

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQ 242
                   A + A  +R+  E  +I+I  G  +  T+S G+A  R       T++  AD+
Sbjct: 303 LKEIMPGRAELTAERIRRAFEAREIDI-DGQMLKCTVSVGVAPGRSQMPDFDTMLSAADK 361

Query: 243 ALYVAKKSGRNRV 255
           ALY AK+ GRNRV
Sbjct: 362 ALYAAKRGGRNRV 374


>gi|261218603|ref|ZP_05932884.1| diguanylate cyclase [Brucella ceti M13/05/1]
 gi|261222225|ref|ZP_05936506.1| diguanylate cyclase [Brucella ceti B1/94]
 gi|261317692|ref|ZP_05956889.1| diguanylate cyclase [Brucella pinnipedialis B2/94]
 gi|261321900|ref|ZP_05961097.1| diguanylate cyclase [Brucella ceti M644/93/1]
 gi|261325151|ref|ZP_05964348.1| diguanylate cyclase [Brucella neotomae 5K33]
 gi|261752361|ref|ZP_05996070.1| diguanylate cyclase [Brucella suis bv. 5 str. 513]
 gi|261758244|ref|ZP_06001953.1| diguanylate cyclase [Brucella sp. F5/99]
 gi|265988725|ref|ZP_06101282.1| diguanylate cyclase [Brucella pinnipedialis M292/94/1]
 gi|265998190|ref|ZP_06110747.1| diguanylate cyclase [Brucella ceti M490/95/1]
 gi|260920809|gb|EEX87462.1| diguanylate cyclase [Brucella ceti B1/94]
 gi|260923692|gb|EEX90260.1| diguanylate cyclase [Brucella ceti M13/05/1]
 gi|261294590|gb|EEX98086.1| diguanylate cyclase [Brucella ceti M644/93/1]
 gi|261296915|gb|EEY00412.1| diguanylate cyclase [Brucella pinnipedialis B2/94]
 gi|261301131|gb|EEY04628.1| diguanylate cyclase [Brucella neotomae 5K33]
 gi|261738228|gb|EEY26224.1| diguanylate cyclase [Brucella sp. F5/99]
 gi|261742114|gb|EEY30040.1| diguanylate cyclase [Brucella suis bv. 5 str. 513]
 gi|262552658|gb|EEZ08648.1| diguanylate cyclase [Brucella ceti M490/95/1]
 gi|264660922|gb|EEZ31183.1| diguanylate cyclase [Brucella pinnipedialis M292/94/1]
          Length = 255

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 3/168 (1%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148
           +L  S+  +   +RID ++GLLN  A   ++    S  E  +++  D D+FK IND+FGH
Sbjct: 61  QLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGH 120

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+  
Sbjct: 121 GVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPF 180

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV
Sbjct: 181 HTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 228


>gi|254787818|ref|YP_003075247.1| response regulator receiver domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237685546|gb|ACR12810.1| response regulator receiver domain protein [Teredinibacter turnerae
           T7901]
          Length = 319

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/172 (38%), Positives = 92/172 (53%), Gaps = 13/172 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  LSR D L+GLLN  ++ + L         +    S++ FDID+FK++ND +GHP G
Sbjct: 151 KLHTLSRTDGLTGLLNRKSWETELHVEFRRFQRHQHGSSLLMFDIDHFKRVNDTYGHPTG 210

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+VI   +  +          GR GGEEFA     +    A ++A  LR  IE  Q+ I+
Sbjct: 211 DEVIRRTAKVVKDALRDIDVAGRYGGEEFAVILTDTDASGAKVVAERLRTTIE--QLTIT 268

Query: 212 -SGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             G S+  TIS GIAE      +P    I  AD+ALY AK +GRN  V FS+
Sbjct: 269 HEGNSLQFTISLGIAELNPSITDP-GAWIEAADRALYKAKHAGRNNSVIFSN 319


>gi|281412634|ref|YP_003346713.1| diguanylate cyclase [Thermotoga naphthophila RKU-10]
 gi|281373737|gb|ADA67299.1| diguanylate cyclase [Thermotoga naphthophila RKU-10]
          Length = 1083

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 85/157 (54%), Gaps = 12/157 (7%)

Query: 107  DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
            D L+G+L+   F+  L         Y   LSI+  D D FK+IND FGH  GDK + +L 
Sbjct: 922  DPLTGVLSRWYFMERLEEEAYKSSRYKSPLSIIMCDADDFKKINDQFGHVAGDKTLNWLG 981

Query: 160  DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             ++  V      VGR GGEEF  A  G+S +EA I A  LRK +     NI      H+T
Sbjct: 982  RKIRSVLRKSDLVGRYGGEEFIIALPGTSLEEARIAAEKLRKAVMEDPENI-----YHVT 1036

Query: 220  ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +S G+AE  + E     I RAD+ALY+AK  G+N VV
Sbjct: 1037 LSFGVAEYKNGEDPFETIKRADEALYLAKTLGKNSVV 1073


>gi|186472539|ref|YP_001859881.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum
           STM815]
 gi|184194871|gb|ACC72835.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum
           STM815]
          Length = 780

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 19/232 (8%)

Query: 36  SIFIATVIFIANIFLFYIGLTPF-----YGLEYILVENLSLVIISITISLLLGYISGSIL 90
            +++    F     LFY   TPF     +    + V     V+I++  + +  +    + 
Sbjct: 126 PLWLTPAHFCIGTALFYAAGTPFLLSLPHPHGDVSVVCWMWVLIALPTAAVFHFGFYGLR 185

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIN 143
           +  F+  +R+++L+  D L+GL N  AF+       SSL     K S +F DIDYFK +N
Sbjct: 186 RNHFLLEDRLARLAATDPLTGLQNRRAFLEQAALRLSSLDP-GAKTSAIFLDIDYFKSLN 244

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGH VGD+ ++ ++  L  + G    V R+GGEEFA    G++ + A  LA  LR   
Sbjct: 245 DQFGHAVGDQALSDVARVLKEMTGAGDIVSRIGGEEFALLH-GAALRPAVQLAETLR--- 300

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             + I   + P   +  S G+AE    E +  ++ RAD+AL  AK SGRNRV
Sbjct: 301 --AAIGRIARPDGQLGASFGVAEYRPGESVMALLDRADEALLRAKYSGRNRV 350


>gi|116329620|ref|YP_799339.1| GGDEF family protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116122513|gb|ABJ80406.1| GGDEF family protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 535

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 98/182 (53%), Gaps = 19/182 (10%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEK-LSIVFFDIDYFKQINDNFGH 148
           S N++++L   D L+G+ N   F+       ++G+ + K  +I+  DID+FKQ+ND FGH
Sbjct: 359 SMNQVAKLIHTDPLTGIWNRRGFLKLTQRSLTIGNRHGKDWTILLVDIDHFKQVNDKFGH 418

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GDK +  ++  L         V R GGEEFA    G  ++ +  +A DLRK +EN Q+
Sbjct: 419 DTGDKTLIKVAQVLSRSIRQTDAVCRWGGEEFAIFLFGVGQKASTDIAEDLRKEVEN-QV 477

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF-------SDI 261
            +  G    +T+S G+++      +      ADQALY AK SGRNRV  F       SD+
Sbjct: 478 RLDDGNP--VTLSIGVSQGTLD--LEEAFVNADQALYRAKSSGRNRVCAFDPKVFSHSDL 533

Query: 262 EN 263
           +N
Sbjct: 534 KN 535


>gi|289208601|ref|YP_003460667.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
 gi|288944232|gb|ADC71931.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
          Length = 385

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 23/244 (9%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGL----EYILVENLSLVIISITISLLLGYISGSIL 90
           F++F   VI I    L   G      L     Y+ V  L   +I   +  L         
Sbjct: 150 FNLFALAVIAITPTLLHAAGFVQHLNLAVYHSYVWVAFLPFALILTLVEFLYW------- 202

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
             L+ +   ++Q +  D L+GL N   F       ++      + +S++F DID+FKQ+N
Sbjct: 203 -RLYETRIELTQQAERDPLTGLPNRRHFFRVAPRQLAIANRTGQPVSVLFVDIDHFKQVN 261

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH +GD+ +  ++  L   F     V R GGEEF     G+  ++A  +A  LR  I
Sbjct: 262 DTHGHAMGDRALCHVARLLQATFRESDLVTRHGGEEFLVWLQGTGPRDAEQVAEQLRARI 321

Query: 204 ENSQI--NISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFS 259
           +   +    S  P I +T+S GIA    + P  + T++ RAD A+  AK+ GRN+VV  S
Sbjct: 322 DREPLAEGGSGHPPIPLTVSIGIASHIPESPEALDTLLTRADDAMSTAKRQGRNKVVLAS 381

Query: 260 DIEN 263
             ++
Sbjct: 382 SQQS 385


>gi|37675899|ref|NP_936295.1| hypothetical protein VVA0239 [Vibrio vulnificus YJ016]
 gi|37200439|dbj|BAC96265.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 380

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 100/192 (52%), Gaps = 12/192 (6%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLS 130
           +  L  +++  + K   I  N++ +L+ ID L+G LN  AF+ +          Y+   +
Sbjct: 190 LETLANWVAAQVHKHQQI--NKMIELAHIDPLTGALNRRAFVEATYFINDKPRHYDHHTA 247

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D FK+IND FGHP GDKV+  ++  L     +   + R GGEEFA      + +
Sbjct: 248 LLMIDLDKFKEINDQFGHPAGDKVLMQIAATLKKQIRSDDLLARFGGEEFAILLHHVNAE 307

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKK 249
           EA  LA  LR  +E   I       I  T+S GIA      +    ++  AD ALYVAK+
Sbjct: 308 EAMTLAETLRVTVEQLTIEHHQH-RIQCTVSIGIALPSSPNQGFEELMQLADNALYVAKR 366

Query: 250 SGRNRVVCFSDI 261
           SGRN+++  SD+
Sbjct: 367 SGRNQII-LSDM 377


>gi|120556751|ref|YP_961102.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120326600|gb|ABM20915.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 405

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 87/167 (52%), Gaps = 8/167 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           + +S+++RID L+GL N  AF        S         +I+  D+D+FK++ND +GH V
Sbjct: 220 DELSEIARIDPLTGLYNRRAFDECCDIEFSRAQRSGAPFAIIMCDLDHFKRVNDRYGHHV 279

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+   ++ L         V R GGEEF     G   ++   +A  LR    ++QI I
Sbjct: 280 GDEVLRRFANTLKEHIRKHDVVARFGGEEFVLLLPGKDTEQGLEVAEKLRAKTADTQITI 339

Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                + ++ S G+A         S +++RAD ALY AKK GRNRVV
Sbjct: 340 GDDVCLTLSASFGVAHYDSSDREWSAVLHRADNALYAAKKQGRNRVV 386


>gi|312962511|ref|ZP_07777002.1| hypothetical protein PFWH6_4432 [Pseudomonas fluorescens WH6]
 gi|311283438|gb|EFQ62028.1| hypothetical protein PFWH6_4432 [Pseudomonas fluorescens WH6]
          Length = 519

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/187 (35%), Positives = 103/187 (55%), Gaps = 14/187 (7%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSI 131
            I  +LLLG    ++L+E      +++Q ++ D L+GL N  A    +S   + ++  ++
Sbjct: 340 QIRRALLLG---ATLLQE---KIGKLNQQAQTDALTGLANRRAMQAILSRWQAADKMFAV 393

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           V  DID+FK++ND FGH VGD+ +  ++  +     +     R+GGEEF      SS Q 
Sbjct: 394 VSLDIDHFKRVNDTFGHAVGDETLRAIAALIQQNSRSNDLACRVGGEEFVVLLPNSSLQA 453

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKS 250
           AA +A  LR  I  + I+       H+T+S G+A  R   + IS ++ RADQ LY AK+ 
Sbjct: 454 AADVAERLRHSIAAATIDTVG----HVTVSLGVALWRPGGDSISAVLERADQLLYRAKQD 509

Query: 251 GRNRVVC 257
           GRNRVV 
Sbjct: 510 GRNRVVV 516


>gi|85708036|ref|ZP_01039102.1| putative diguanylate cyclase (GGDEF) [Erythrobacter sp. NAP1]
 gi|85689570|gb|EAQ29573.1| putative diguanylate cyclase (GGDEF) [Erythrobacter sp. NAP1]
          Length = 408

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/192 (38%), Positives = 98/192 (51%), Gaps = 13/192 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLS--RIDCLSGLLNHSAFISS----LGSYN 126
           +I++T+   L  + G IL  L ++     Q++  RID L+GL N +AF       L    
Sbjct: 187 VIAMTV---LPVVLGMILLALVVTDEWEDQIASGRIDALTGLPNRAAFEEQVDELLARAR 243

Query: 127 EK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
           E+   +S++  DID+FKQ+ND +GH VGDKVI+   D +          GR+GGEEF   
Sbjct: 244 EERIPVSLLVGDIDHFKQVNDTWGHSVGDKVISAFGDIMARKIRPGDVAGRIGGEEFCVL 303

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
                EQ A  LA  LR    +  I      S   T S GIAE    E  +    RAD A
Sbjct: 304 VWNCHEQGAVSLAERLRLSFASEAIE-GLPTSESFTASFGIAEWQRGEDYAQCFRRADGA 362

Query: 244 LYVAKKSGRNRV 255
           LY AK+SGRNRV
Sbjct: 363 LYSAKRSGRNRV 374


>gi|197105175|ref|YP_002130552.1| GGDEF family protein [Phenylobacterium zucineum HLK1]
 gi|196478595|gb|ACG78123.1| GGDEF family protein [Phenylobacterium zucineum HLK1]
          Length = 349

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 86/167 (51%), Gaps = 14/167 (8%)

Query: 106 IDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
            D LSGL N  AF  +L      G     +++   DID+FK  ND +GH  GD+VI +++
Sbjct: 182 TDALSGLANRKAFDEALERACDQGEQGGPVTLAVIDIDHFKSFNDTWGHQTGDQVIRYVA 241

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-----KIIENSQINISSGP 214
             +      P    R GGEEFA    G S +++  +   +R     +I++    N   G 
Sbjct: 242 SVIQRCSPAPRVSARYGGEEFAIIFPGESARDSLAVLEAVREEVSSRILKRRSTNEDLGA 301

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              ITISAGIAER   E  ++++ RAD ALY +K+ GRNR  C   I
Sbjct: 302 ---ITISAGIAERKPGESPASLVERADSALYASKRGGRNRTSCADPI 345


>gi|320161687|ref|YP_004174912.1| hypothetical protein ANT_22860 [Anaerolinea thermophila UNI-1]
 gi|319995541|dbj|BAJ64312.1| hypothetical membrane protein [Anaerolinea thermophila UNI-1]
          Length = 362

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 111/209 (53%), Gaps = 14/209 (6%)

Query: 53  IGLTPFYGL-EYILVENLSLVIISITISLLLGYISGSILKELFI----SYNRISQLSRID 107
           +G+  F+G+ E +LVE + L     T S LL  ++ +  K+ FI    + + + Q++  D
Sbjct: 153 VGIFRFWGIAEPLLVEYIRLEARIATTSFLLFILART--KDEFIRTLTTAHAMHQMAYTD 210

Query: 108 CLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
            L+ L N      +L    S  ++ +++  DID+FKQIND FGH  GD V+  +SD L  
Sbjct: 211 PLTFLPNRRWLTQTLEQRLSRKKRFTLILVDIDHFKQINDTFGHDTGDAVLREVSDCLHH 270

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                  +GR GGEEF   A     Q A  LA  LRK +EN ++ +    ++ +T S G+
Sbjct: 271 QIRAGDVIGRWGGEEFLILASEEEAQSALQLAQRLRKALENFKLEV----NLSVTASFGV 326

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRN 253
                 + I +++ RAD ALY AK +GRN
Sbjct: 327 TLSQEDDTIFSLLKRADLALYRAKSNGRN 355


>gi|254708574|ref|ZP_05170402.1| GGDEF domain protein [Brucella pinnipedialis M163/99/10]
          Length = 204

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 3/168 (1%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148
           +L  S+  +   +RID ++GLLN  A   ++    S  E  +++  D D+FK IND+FGH
Sbjct: 34  QLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGH 93

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+  
Sbjct: 94  GVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPF 153

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV
Sbjct: 154 HTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 201


>gi|239905612|ref|YP_002952351.1| putative signaling protein [Desulfovibrio magneticus RS-1]
 gi|239795476|dbj|BAH74465.1| putative signaling protein [Desulfovibrio magneticus RS-1]
          Length = 624

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 97/175 (55%), Gaps = 10/175 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGL------LNHSAFISSLGS-YNEKLSIVFFDIDYFKQIND 144
           E  I   R+ +++  D L+GL      L HS+ +  +   +   LSI  FDID+FKQ+ND
Sbjct: 448 ERKIMEERLKEMATTDSLTGLNNRQHFLEHSSILFEMAKRHKANLSIALFDIDHFKQVND 507

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD V+  LS   +  F +   +GR+GGEEFA     + ++EA + +   RK++E
Sbjct: 508 TWGHEAGDLVLRELSKLALNCFRSSDIIGRIGGEEFAVIMPETDKEEAILASERFRKLVE 567

Query: 205 NSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +++    +   ++IT+S GIA+        I+ +   +D ALY AK +GRN V C
Sbjct: 568 STKFEYEND-LLNITVSIGIAQFDPNTNTTINDLTKISDDALYTAKANGRNMVFC 621


>gi|205352436|ref|YP_002226237.1| hypothetical protein SG1195 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205272217|emb|CAR37076.1| predicted phage protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326627490|gb|EGE33833.1| putative phage protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 381

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 103/199 (51%), Gaps = 13/199 (6%)

Query: 71  LVIISITISLLLG-YISGSILKELFISYN-------RISQLSRIDCLSGLLNHSAFISSL 122
           LV +++T  L+ G +I      E ++ Y        R+  ++  D L+G  N  +  S L
Sbjct: 182 LVWLTLTTILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANRRSMESFL 241

Query: 123 GS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGE 178
           G      E  +++  D+DYFK  ND++GH  GD  +A ++  +     TP   V R GGE
Sbjct: 242 GDALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVAGVMKRSVRTPADLVARYGGE 301

Query: 179 EFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EF      SS  EAA++A  ++  + E +  + +S  S  +T+S GI      + ++ II
Sbjct: 302 EFVVVLPSSSLNEAALVAERIQTNLRETAMPHAASAVSETVTVSMGITLSTAGDTVTGII 361

Query: 238 YRADQALYVAKKSGRNRVV 256
            RAD+ALY AK+ GRNR V
Sbjct: 362 ARADEALYRAKQQGRNRWV 380


>gi|144897841|emb|CAM74705.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Magnetospirillum gryphiswaldense MSR-1]
          Length = 556

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/188 (38%), Positives = 94/188 (50%), Gaps = 16/188 (8%)

Query: 83  GYISGSILKELFISY-----NRISQLSRI---DCLSGLLNH---SAFI-SSLGSYNEK-- 128
           G+++  I  E  IS       R+  L  +   D L+GL NH   S F+ +SL S      
Sbjct: 366 GFLTKPIQPEDLISAVAIRAERMRTLRSLMVRDSLTGLFNHTFMSQFLETSLASARRDDG 425

Query: 129 -LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            L  V  D+D+FKQ+ND +GHP GD+V+  L+  L         VGR GGEEFA      
Sbjct: 426 MLCFVMIDVDHFKQVNDTYGHPAGDQVLVALARLLQQRLRNSDMVGRYGGEEFAVILQDI 485

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
              EA+ + +DLR      +     G     T SAGIA    K     ++  ADQALYVA
Sbjct: 486 GTDEASRIVDDLRADFAKVRFTAGDG-DFSCTFSAGIAGYPGKAQADLLLESADQALYVA 544

Query: 248 KKSGRNRV 255
           KKSGRN+V
Sbjct: 545 KKSGRNQV 552


>gi|227822088|ref|YP_002826059.1| GGDEF family protein [Sinorhizobium fredii NGR234]
 gi|227341088|gb|ACP25306.1| GGDEF family protein [Sinorhizobium fredii NGR234]
          Length = 398

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/196 (36%), Positives = 106/196 (54%), Gaps = 19/196 (9%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129
           +++I++  I++L     G ++K++ I   R S  S +D LSGL N   F+  L    E  
Sbjct: 196 AMLIVATGIAML-----GVMVKDI-IDEARAS--SELDALSGLYNRRGFVDRLTPVLETA 247

Query: 130 ------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA- 182
                 +++  D+D FK +ND +GH  GD VI   S  LV +  +     RLGGEEFA  
Sbjct: 248 GADGPGTLILADLDRFKLVNDTYGHHAGDGVIRQFSRVLVELMPSRAVAARLGGEEFAVF 307

Query: 183 -AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
              LG S  EA +LA+ +R  + +++I+     S+ IT S G+A    +E +   + RAD
Sbjct: 308 LPRLGLS--EARVLAHGMRAALASTRID-GLPDSVKITASFGVASIGPRESLEAAMQRAD 364

Query: 242 QALYVAKKSGRNRVVC 257
           +ALY AK  GRNRV C
Sbjct: 365 KALYAAKADGRNRVEC 380


>gi|149376778|ref|ZP_01894535.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter algicola DG893]
 gi|149358899|gb|EDM47366.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter algicola DG893]
          Length = 321

 Score =  101 bits (252), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 113/220 (51%), Gaps = 17/220 (7%)

Query: 57  PFYGLEYILVENLSLVIIS------ITISLLLGYIS--GSILKELFISYNRISQLSRIDC 108
           P  G E  + +NL++  +S        I L++  ++   +  + L  +  ++++LS  D 
Sbjct: 101 PITGTEDFMYQNLTISPLSGPDGQVEKICLMVYDVTDIATSKRALETANEQLAKLSMTDR 160

Query: 109 LSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GLLN   + + + +       Y     ++ FDID+FK +ND +GH  GD+VI + +  
Sbjct: 161 LTGLLNRGTWENLIDAEYERYRRYGHNTCLIMFDIDHFKAVNDTYGHLAGDEVIKYTAKV 220

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +          GR GGEEF      +  + A ++   +R+ I+NS +  ++ P I  T+S
Sbjct: 221 MKDNLRQSDSPGRYGGEEFGIILPETDAEGARVICERIREAIQNSTVQTTAAP-IQYTVS 279

Query: 222 AGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            GIA    + E     + +AD+ALY AK+ GRNRVV F +
Sbjct: 280 IGIAPLTDRPENHMQWLQQADEALYAAKEGGRNRVVVFGE 319


>gi|91976934|ref|YP_569593.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91683390|gb|ABE39692.1| diguanylate cyclase [Rhodopseudomonas palustris BisB5]
          Length = 355

 Score =  101 bits (252), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 9/165 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F       + S  +    LS++  DID+FK  NDN+GH  GD+V+  + 
Sbjct: 181 DPLTGLGNRKHFDRVVTEAVRSAAATRLPLSLLMMDIDHFKSFNDNYGHLTGDQVLRLVG 240

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--H 217
             L           R GGEEFA     +  ++A ++A+D+R+ + + ++   S   I   
Sbjct: 241 MTLKQTIKNKDIPSRYGGEEFAVVLPNTPLRQALVIADDIRRTVMSKELKKKSTGEILGR 300

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +T+SAG++    ++    +I RAD  LY AK++GRNRV+C +D E
Sbjct: 301 VTLSAGVSTLKPEDDADALIERADACLYSAKRNGRNRVICETDPE 345


>gi|170728651|ref|YP_001762677.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169813998|gb|ACA88582.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
          Length = 320

 Score =  101 bits (252), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 129/269 (47%), Gaps = 29/269 (10%)

Query: 7   DFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILV 66
           D  S WL  ++ +ES     F++    F S      IF       +    P  G    + 
Sbjct: 63  DLPSTWL--KQKMES----VFLLKNRAFISWEQRPYIFK------FKNYRPITGRADFMY 110

Query: 67  ENLSLVIIS------ITISLLLGYISGSILKELFI--SYNRISQLSRIDCLSGLLNHSAF 118
           +N++L+ +S        IS+++  ++   +  L +  +  R+  LS+ D L+ L N   +
Sbjct: 111 QNVTLLPLSSLTGQITHISMIVYDVTDVAINRLQLKGANERLEYLSQTDGLTQLHNRRHW 170

Query: 119 ISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              +         Y ++ S+V FDID FK++NDN+GH +GDKVI  +S  L         
Sbjct: 171 QQCMQREFDRHARYGDETSLVMFDIDDFKKVNDNYGHTIGDKVIQHISHLLKQSLRETDC 230

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHK 230
            GR GGEEF+     +S  +A   A  LRK IE + + +    +I++T+S GI + +   
Sbjct: 231 AGRYGGEEFSVVLAKTSATDALQFAERLRKKIEETAL-VYEDQTINVTVSIGICDIQDEL 289

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           E     +  AD+ALY AK +GRN+ V + 
Sbjct: 290 ENSGQWLNCADEALYTAKDTGRNKCVIYK 318


>gi|261416036|ref|YP_003249719.1| diguanylate cyclase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261372492|gb|ACX75237.1| diguanylate cyclase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302325560|gb|ADL24761.1| diguanylate cyclase (GGDEF) domain protein [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 443

 Score =  101 bits (252), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 94/175 (53%), Gaps = 11/175 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQI 142
           L+ L I  +   + S+ D L+G LN + F   L    EKL       S + FDID+FK++
Sbjct: 266 LRALEIEKSEYEKSSKEDPLTGCLNRAGFGGVLLREQEKLNRTGGPVSFMIFDIDHFKEV 325

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH VGD+V+  L+  +  +      + R GGEEF   +  +S Q AA LA  LRK 
Sbjct: 326 NDTYGHLVGDEVLVNLAKLVQGMIRNTDSLVRWGGEEFVILSDDTSIQNAAFLAEKLRKA 385

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IE++ +         +T S G+ E    E   + I RAD+ALY +K++GRNRV  
Sbjct: 386 IESATLITQQ----QVTCSFGVTEMIPGEDPKSFIARADKALYSSKENGRNRVTV 436


>gi|171058109|ref|YP_001790458.1| diguanylate cyclase [Leptothrix cholodnii SP-6]
 gi|170775554|gb|ACB33693.1| diguanylate cyclase [Leptothrix cholodnii SP-6]
          Length = 381

 Score =  101 bits (252), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 93/175 (53%), Gaps = 9/175 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           + L  +  R+ QL+  D L+GL N     ++L    E+        S+   DID+FK+IN
Sbjct: 202 ERLAAALLRVEQLAERDELTGLPNRRRMQAALAEERERCSRNGVSFSVAMLDIDHFKRIN 261

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKI 202
           D +GHP+GD V+  ++  +      P  VGR+GGEEF     G++  +EA  +   +R  
Sbjct: 262 DLYGHPMGDAVLRSVAQLMRTALRKPDLVGRVGGEEFLMILPGAARLEEAKHVVERVRAA 321

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IE +  + +    + +T S G+A     E + ++  RAD+ LY+AK+ GRN+V  
Sbjct: 322 IEGNDWSATRA-DLQVTASIGVAVGEPGESVESLFDRADRGLYLAKQGGRNQVAA 375


>gi|218515210|ref|ZP_03512050.1| putative sensory box/GGDEF family protein [Rhizobium etli 8C-3]
          Length = 311

 Score =  101 bits (252), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 99/184 (53%), Gaps = 18/184 (9%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEK-----LSIVFFDIDYFKQ 141
            + KEL   Y RI+     D L+ L N  AF   L + +N        +++  DID FK+
Sbjct: 120 QVRKELD-EYKRIAN---TDSLTRLSNRRAFDDRLAAVFNNPGMRPVTALLLADIDNFKK 175

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GHPVGDK++A ++  +       +FV R GGEEFA    G++ +E   +A  +R+
Sbjct: 176 INDTYGHPVGDKILATVASVIRSNVRRDVFVARAGGEEFALIIEGNTAEEVTAIAERIRR 235

Query: 202 IIE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +E     NS+  ++ GP   IT+S GI    + E    +  RAD ALY AK +GRN +V
Sbjct: 236 TLETTPFKNSRTRVNYGP---ITVSIGICMASNAEDAGELYSRADIALYGAKNAGRNCIV 292

Query: 257 CFSD 260
            + D
Sbjct: 293 LYQD 296


>gi|167625792|ref|YP_001676086.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167355814|gb|ABZ78427.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           halifaxensis HAW-EB4]
          Length = 623

 Score =  101 bits (252), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 104/184 (56%), Gaps = 11/184 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEK----LSIVFFDIDYFKQI 142
           L+EL  +  ++++ +RID L+G+ N ++F   I + G  + +    LSI+  DID FK I
Sbjct: 441 LRELNEANQKLTEQTRIDSLTGVKNRASFDRRILAEGRISRRQQAPLSILMLDIDRFKLI 500

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND++GH  GD+ +  ++DQL  +   P   V R GGEEFA     + +  A  +A  +RK
Sbjct: 501 NDSYGHLAGDQALRVIADQLKQILKRPTDLVSRFGGEEFAIILPNTDKIGAQQVAETIRK 560

Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +I    I    G  I +T+S G++      +E  + ++ +AD+ALY AK  GRN+V  +S
Sbjct: 561 VISKLPI-CWGGNRIRLTVSIGVSSEIITSEEHTTLLLEQADKALYQAKNDGRNQVKLYS 619

Query: 260 DIEN 263
             ++
Sbjct: 620 PDQD 623


>gi|119944046|ref|YP_941726.1| diguanylate cyclase [Psychromonas ingrahamii 37]
 gi|119862650|gb|ABM02127.1| diguanylate cyclase [Psychromonas ingrahamii 37]
          Length = 611

 Score =  101 bits (252), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 93/173 (53%), Gaps = 9/173 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL  + +R   L+R D L+ +LN  AF       I     Y   L+I+  D+D+FK IN
Sbjct: 436 EELEQAKDRAELLARTDPLTNMLNRRAFFECGSVEIKRSLRYKSSLAIMMIDLDHFKSIN 495

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           DN+GH  GD  +  +++ L  +      +GR+GGEEFA     +  + A  LA  LR  I
Sbjct: 496 DNYGHAAGDNALLSVANTLKAMIRNVDIIGRIGGEEFAVIIPHADLEIATELAQRLRLGI 555

Query: 204 ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           E  +I I + P + IT   G+       E +   + RAD+ALY+AK++GRNRV
Sbjct: 556 EKVEIIIDNQP-VKITACFGVTSIDIKSESLDEALKRADKALYLAKENGRNRV 607


>gi|94501819|ref|ZP_01308331.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Oceanobacter sp. RED65]
 gi|94426040|gb|EAT11036.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Oceanobacter sp. RED65]
          Length = 642

 Score =  101 bits (252), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 98/182 (53%), Gaps = 13/182 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSI--VFFDIDYFKQI 142
           L+EL  ++ ++  +S  D L+ + N   F     S     +  K+SI  +  DID+FK++
Sbjct: 458 LEELSNAHEKLKNISVTDALTKIHNRYFFDQHWRSEFKRAHRHKMSIALIILDIDHFKKV 517

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           NDNFGHP GD  +  ++  + +        V RLGGEEFA    G+ E  A  +A  +R 
Sbjct: 518 NDNFGHPAGDLCLQKVAQSIRIQANRESDLVCRLGGEEFAVILPGTDEMGAYEVAEKIRH 577

Query: 202 IIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIY-RADQALYVAKKSGRNRVVC 257
            IE   I+   G +I IT+S GI+    R   E +  I++ +ADQALY AK +GRNR V 
Sbjct: 578 TIEKRHISW-EGKTIKITVSIGISAMTPRKSDEKMRNIMFNQADQALYQAKGNGRNRTVI 636

Query: 258 FS 259
           F 
Sbjct: 637 FE 638


>gi|296137258|ref|YP_003644500.1| diguanylate cyclase with PAS/PAC sensor [Thiomonas intermedia K12]
 gi|295797380|gb|ADG32170.1| diguanylate cyclase with PAS/PAC sensor [Thiomonas intermedia K12]
          Length = 420

 Score =  101 bits (252), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
            R+  L+  D L+G+ N S+ +  L    ++   LS++  D+DYFK+IND FGH  GD+V
Sbjct: 250 RRLEHLATFDSLTGIHNRSSILGILERLLQRKAPLSVLLLDLDYFKRINDGFGHAAGDRV 309

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +      +     +  F GRLGGEEF     G+ E EA  +A  LR  +    I ++ G 
Sbjct: 310 LCRFVQIIEDEKRSRDFFGRLGGEEFLLILDGADEAEAGQIAERLRAAVSAEAIALAEGE 369

Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++ +T+S G+ + R   +  + ++ RAD+ALY AK+ GRN  VC
Sbjct: 370 AVALTVSIGMTQSRPGDQRTADVLVRADRALYRAKQMGRN-CVC 412


>gi|218246860|ref|YP_002372231.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8801]
 gi|257059902|ref|YP_003137790.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8802]
 gi|218167338|gb|ACK66075.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8801]
 gi|256590068|gb|ACV00955.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8802]
          Length = 317

 Score =  101 bits (252), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 96/168 (57%), Gaps = 9/168 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  L+  D L+G+ N   F       IS +  Y+  LS +  D+D+FKQIND +GH +GD
Sbjct: 142 IKTLATTDPLTGVFNRRFFLEFAQKEISRVHRYDYSLSTLMLDVDHFKQINDTYGHNIGD 201

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+ FL+  L+ +      + RLGGEEFA     +  + A  LA  + +++  S++N+ +
Sbjct: 202 EVLKFLTQVLLKIIRKADCLARLGGEEFAILLPQTPLEGAEELARRILQVLRKSELNL-A 260

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           G  I +T+S G++  +  ++ I   + RAD+AL+ AK  GR+R V + 
Sbjct: 261 GKIIRLTLSIGVSSYQVSEDTIEESLKRADRALFAAKNQGRDRFVIYP 308


>gi|262165593|ref|ZP_06033330.1| GGDEF family protein [Vibrio mimicus VM223]
 gi|262025309|gb|EEY43977.1| GGDEF family protein [Vibrio mimicus VM223]
          Length = 978

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 115/229 (50%), Gaps = 24/229 (10%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI------------- 95
           + +   + P++     ++  L ++++++ IS+++  I     +E ++             
Sbjct: 741 YSYSFTIAPYFWQRKEVIFMLGMLVVALCISVVMWRIRTLKRREWYLVEQVALQTQKLRF 800

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
              +  +LS+ D L+GL N  AF        S +    +++SI   DID+FKQIND + H
Sbjct: 801 QAEKFERLSKEDELTGLANRRAFDVYLKQAFSRVDHPGQQVSIGLLDIDHFKQINDRYSH 860

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+ I  +S QL+        V R GGEEF    +G   +EA     +LR  IE  Q+
Sbjct: 861 IIGDQAIVAVSQQLLKYVRDKTRVARWGGEEFTILYVGDP-KEAWSYFEELRCTIE--QV 917

Query: 209 NISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + S+  P + +T+S G A+    E   +++  AD AL  AKK GRNRVV
Sbjct: 918 DFSTVAPGLSVTVSVGFADSQQAESYESVLKLADHALLTAKKLGRNRVV 966


>gi|303246080|ref|ZP_07332361.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           fructosovorans JJ]
 gi|302492476|gb|EFL52347.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           fructosovorans JJ]
          Length = 466

 Score =  101 bits (252), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 8/166 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++ L+  D L+G  N   F+            +++ +S +  DID+FK IND +GH +G
Sbjct: 297 QLNHLATTDALTGANNLHRFLERAEEEIIRSERHDKPVSFLMLDIDHFKNINDTYGHAIG 356

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  LS     +F      GR+GGEEFAA    ++ + A  +A  LR+I+   +++  
Sbjct: 357 DDVLRVLSAACRKLFRKSDVFGRVGGEEFAAILPETTLEAATQVAERLRQILAQLEVDGP 416

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +G +I  T+S GI ER + + +S ++  AD++LY AK SGRN+VV 
Sbjct: 417 NG-NISFTVSIGIVERKNGQNLSDVMRFADKSLYEAKNSGRNKVVA 461


>gi|213969573|ref|ZP_03397709.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
 gi|301383348|ref|ZP_07231766.1| GGDEF domain protein [Pseudomonas syringae pv. tomato Max13]
 gi|302059380|ref|ZP_07250921.1| GGDEF domain protein [Pseudomonas syringae pv. tomato K40]
 gi|302134509|ref|ZP_07260499.1| GGDEF domain protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213925669|gb|EEB59228.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
          Length = 358

 Score =  101 bits (252), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 114/214 (53%), Gaps = 10/214 (4%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L P   L+  +++  + + + +   + +G+++  +  +L+   N +  LSR D L+GLLN
Sbjct: 135 LNPVVNLDGNMMQIYACLPVLVIYPIFIGWMNHQVTLKLWEHRNILRTLSRTDSLTGLLN 194

Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
           H A+   L        + +++  I   DID+FK IND +GH +GD V+  +S+ L+    
Sbjct: 195 HGAWKDLLDLEFAKSQNQHQECVIALIDIDHFKIINDTYGHLMGDTVLQNISEALIENLR 254

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
               +GR GG+EF      +S  +A  +   +R  I+  ++  S    +  ++S GIA  
Sbjct: 255 DSDLIGRCGGDEFCVILPNTSLLQAREILERMRLAID--ELTYSLHCDLKASLSVGIAAY 312

Query: 228 CHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + P  S+ ++ AD+ALY+AK +GRNRVV   D
Sbjct: 313 SPELPDASSWLHEADKALYLAKSTGRNRVVSAED 346


>gi|28868822|ref|NP_791441.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28852061|gb|AAO55136.1| GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 358

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 114/214 (53%), Gaps = 10/214 (4%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L P   L+  +++  + + + +   + +G+++  +  +L+   N +  LSR D L+GLLN
Sbjct: 135 LNPVVNLDGNMMQIYACLPVLVIYPIFIGWMNHQVTLKLWEHRNILRTLSRTDSLTGLLN 194

Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
           H A+   L        + +++  I   DID+FK IND +GH +GD V+  +S+ L+    
Sbjct: 195 HGAWKDLLDLEFAKSQNQHQECVIALIDIDHFKIINDTYGHLMGDTVLQNISEALIENLR 254

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
               +GR GG+EF      +S  +A  +   +R  I+  ++  S    +  ++S GIA  
Sbjct: 255 DSDLIGRCGGDEFCVILPNTSLLQAREILERMRLAID--ELTYSLHCDLKASLSVGIAAY 312

Query: 228 CHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + P  S+ ++ AD+ALY+AK +GRNRVV   D
Sbjct: 313 SPELPDASSWLHEADKALYLAKSTGRNRVVSAED 346


>gi|294139118|ref|YP_003555096.1| sensory box/GGDEF family protein [Shewanella violacea DSS12]
 gi|293325587|dbj|BAJ00318.1| sensory box/GGDEF family protein [Shewanella violacea DSS12]
          Length = 314

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 113/219 (51%), Gaps = 17/219 (7%)

Query: 57  PFYGLEYILVENLSLVIIS------ITISLLLGYISGSILKELFISY--NRISQLSRIDC 108
           P  G    + +N++L+ +S        IS+++  ++   + +L +     R+  LS+ D 
Sbjct: 94  PITGRADFMYQNVTLLPLSSLTGQITHISMIVYDVTDVAINKLQLKSVNERLEHLSQTDG 153

Query: 109 LSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ L N   +             Y ++ S+V FDID+FK++ND +GH  GDKVI  +S  
Sbjct: 154 LTQLHNRRYWQICMQKEFDRHARYGDETSLVMFDIDHFKKVNDTYGHMAGDKVIQHISHL 213

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L          GR GGEEFA   + +S ++A   A  LR  IE +++ +  G  I +T+S
Sbjct: 214 LSQSLRETDCAGRYGGEEFAVVLVKTSAEDALKFAERLRNKIETTEL-VYEGKPIKVTVS 272

Query: 222 AGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFS 259
            GI++   +   S   +  ADQALY AK++GRN+ + + 
Sbjct: 273 MGISDLQDRVGNSGQWLSFADQALYKAKEAGRNKCLIYK 311


>gi|270261967|ref|ZP_06190239.1| diguanylate cyclase [Serratia odorifera 4Rx13]
 gi|270043843|gb|EFA16935.1| diguanylate cyclase [Serratia odorifera 4Rx13]
          Length = 477

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 126/246 (51%), Gaps = 19/246 (7%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL---VIISITISL 80
           P   +++ ++ FS+F   V+ +  I++ +  L    GL  I V+  +L   V + + ++L
Sbjct: 224 PVPILLWLAMSFSLFTTLVVVL--IYVLWCHLAIDLGLIAINVDMKALQNTVSMRLGVAL 281

Query: 81  L-LGYISGSILKELFISYNRISQLSRI---DCLSGLLNHSAFISS----LGSYNEKLSIV 132
           L LG I+  I    F     + QL  +   D L+ +L  +AF+      L    E++ I+
Sbjct: 282 LALGPIA--IASMNFARNALLRQLEHVANHDALTHVLTRNAFMQRGSRLLTQKGEQVCIM 339

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DIDYFK IND FGH  GD  +   +  +          GR+GGEEFA  AL   +++A
Sbjct: 340 MLDIDYFKSINDRFGHSGGDAALISFTRAIAGDLRDSDLFGRMGGEEFAIVALIERQEDA 399

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKK 249
             LA  LR+ +E   I + +G  + IT+S G+   C    ++ +  ++  AD A+Y AK 
Sbjct: 400 VYLAERLRRRVEIESIAMPAGNHLQITVSIGMVT-CIGGTEQNLDNLLKIADMAVYKAKN 458

Query: 250 SGRNRV 255
           SGRNRV
Sbjct: 459 SGRNRV 464


>gi|190892067|ref|YP_001978609.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190697346|gb|ACE91431.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 355

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 99/184 (53%), Gaps = 18/184 (9%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEK-----LSIVFFDIDYFKQ 141
            + KEL   Y RI+     D L+ L N  AF   L + +N        +++  DID FK+
Sbjct: 164 QVRKELD-EYKRIAN---TDSLTRLSNRRAFDDRLAAVFNNPGMRPVTALLLADIDNFKK 219

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GHPVGDK++A ++  +       +FV R GGEEFA    G++ +E   +A  +R+
Sbjct: 220 INDTYGHPVGDKILATVASVIRSNVRRDVFVARAGGEEFALIIEGNTAEEVTAIAERIRR 279

Query: 202 IIE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +E     NS+  ++ GP   IT+S GI    + E    +  RAD ALY AK +GRN +V
Sbjct: 280 TLETTPFKNSRTRVNYGP---ITVSIGICMASNAEDAGELYSRADIALYGAKDAGRNCIV 336

Query: 257 CFSD 260
            + D
Sbjct: 337 LYQD 340


>gi|168467926|ref|ZP_02701763.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|198241964|ref|YP_002215227.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|195628978|gb|EDX48374.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197936480|gb|ACH73813.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
          Length = 353

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 103/199 (51%), Gaps = 13/199 (6%)

Query: 71  LVIISITISLLLG-YISGSILKELFISYN-------RISQLSRIDCLSGLLNHSAFISSL 122
           LV +++T  L+ G +I      E ++ Y        R+  ++  D L+G  N  +  S L
Sbjct: 154 LVWLTLTTILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANRRSMESFL 213

Query: 123 GS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGE 178
           G      E  +++  D+DYFK  ND++GH  GD  +A ++  +     TP   V R GGE
Sbjct: 214 GDALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVAGVMKRSVRTPADLVARYGGE 273

Query: 179 EFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EF      SS  EAA++A  ++  + E +  + +S  S  +T+S GI      + ++ II
Sbjct: 274 EFVVVLPSSSLNEAALVAERIQTNLRETAMPHAASAVSETVTVSMGITLSTAGDTVTGII 333

Query: 238 YRADQALYVAKKSGRNRVV 256
            RAD+ALY AK+ GRNR V
Sbjct: 334 ARADEALYRAKQQGRNRWV 352


>gi|146309930|ref|YP_001175004.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter sp. 638]
 gi|145316806|gb|ABP58953.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter sp. 638]
          Length = 468

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 88/160 (55%), Gaps = 11/160 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK---------LSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           D L+G  N SA +  L +  E+           ++ FD+DYFKQIND +GH VGD  + +
Sbjct: 304 DDLTGCFNRSAILQKLQAATEQHQPSETGSPFCVLMFDLDYFKQINDEWGHQVGDAALVY 363

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
             D+L  +      +GR+GGEEF      +  Q A  L+  LR  + +  + +    S+ 
Sbjct: 364 FCDRLRELSPRLSALGRVGGEEFLLLLTQADSQAAMALSTLLRSSLFDRPMRVEDK-SLV 422

Query: 218 ITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
           ++ SAG+ E CH +   S+++ RAD+ALY AK+SGR + V
Sbjct: 423 LSFSAGVVEVCHGQRDTSSLLTRADKALYDAKRSGRGKTV 462


>gi|56461594|ref|YP_156875.1| intracellular signaling protein [Idiomarina loihiensis L2TR]
 gi|56180604|gb|AAV83326.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Idiomarina
           loihiensis L2TR]
          Length = 462

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 105/210 (50%), Gaps = 13/210 (6%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           PF  LE  +V  +   + ++            I  +L    + ++ ++  D L+GL N S
Sbjct: 257 PFTELEIEMVRMMGTALETVIAEQ-------KIRSDLIRQRDDMALIAYTDALTGLKNRS 309

Query: 117 AFI----SSLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           A +     SL   N     V    D D+FK IND +GH +GDKV+   S+ +     +  
Sbjct: 310 AGMEILEQSLVRQNGGRGFVVSVIDFDHFKTINDTYGHDIGDKVLIAGSEAMSAAVRSSD 369

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            V R+GGEEF      +  + A+ +   +R  +E + + + SG  I+ T+S G +E    
Sbjct: 370 SVVRVGGEEFMVVLAYADHESASQVLERVRAAVEETVVTLDSGEVINPTVSVGASESHPD 429

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + +S+I  RADQALY AK+ GRNRVV  S+
Sbjct: 430 DDVSSIYRRADQALYKAKREGRNRVVWASE 459


>gi|327190385|gb|EGE57482.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 392

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 102/192 (53%), Gaps = 7/192 (3%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN 126
           E+LSL +  I     +G +S ++ +    + +R+  ++  D L+GLLN  A     G+  
Sbjct: 187 EDLSLAV-CIAGMTGIGALSLALHQWRLAARHRLEAIT--DPLTGLLNRRAVFDQYGTRP 243

Query: 127 EKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
             ++  ++ FDID+FK +ND +GH  GD+VI   +++L           RLGGEEFA   
Sbjct: 244 MGMTTAVIVFDIDHFKSVNDRYGHAAGDRVIMVFAEELQAHCSAGDTAARLGGEEFALVL 303

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQA 243
                  A ++A  +R+  E  +I+I  G  +  T+S G+A  R       T++  AD+A
Sbjct: 304 KEIMPGRAELVAERIRRAFEAREIDI-DGQMLRCTVSVGVAPGRSQMPDFDTMLSAADKA 362

Query: 244 LYVAKKSGRNRV 255
           LY AK+ GRNRV
Sbjct: 363 LYAAKRGGRNRV 374


>gi|332529270|ref|ZP_08405233.1| response regulator PleD [Hylemonella gracilis ATCC 19624]
 gi|332041280|gb|EGI77643.1| response regulator PleD [Hylemonella gracilis ATCC 19624]
          Length = 384

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 12/160 (7%)

Query: 107 DCLSGLLNHSAFISSL------GSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           D L+GL N     S+L      G  N++    LS++  D+D+FK++ND  GH VGD+++ 
Sbjct: 224 DALTGLANRRLLDSTLSSRWQVGGLNDRRERPLSVLMLDLDHFKRVNDTHGHDVGDQILK 283

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             + +       P    R GGEEF     G+   +A ++A  +R  I  + + + + P +
Sbjct: 284 AFAARTSQQLRKPDLFARYGGEEFTVLLPGTDAPKALVIAERVRAAI--AGMPLIAEPPV 341

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            IT+S G+A+R   E    ++ RAD ALY AK+ GRNRV+
Sbjct: 342 PITVSIGVAQRKPNESTEALLARADVALYAAKQGGRNRVM 381


>gi|192362269|ref|YP_001982526.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107]
 gi|190688434|gb|ACE86112.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107]
          Length = 322

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 85/170 (50%), Gaps = 9/170 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  LSR D L+ L N   +             Y    S++  DID+FK+INDN+GH VG
Sbjct: 154 QLQNLSRTDHLTSLFNRGYWELRLIQEFKRYDRYESPSSLIMLDIDHFKKINDNYGHTVG 213

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+ I  +S  +          GR GGEEF      ++   A ++A  LR IIE   +  +
Sbjct: 214 DEAIRCVSRVIKEQVRDLDIAGRYGGEEFGIILTSTNGDGACVIAERLRSIIEKQTV-YA 272

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            G  IH TIS G+AE   H       I +AD ALY +K+SGRNR    +D
Sbjct: 273 EGHEIHFTISLGVAELNDHMHDHRQWIEKADHALYKSKESGRNRCTLSAD 322


>gi|156742710|ref|YP_001432839.1| diguanylate cyclase [Roseiflexus castenholzii DSM 13941]
 gi|156234038|gb|ABU58821.1| diguanylate cyclase [Roseiflexus castenholzii DSM 13941]
          Length = 380

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 95/179 (53%), Gaps = 11/179 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           + L   Y  +  ++  D L+GL N       L         Y ++  +  FDID+FKQ+N
Sbjct: 198 ERLRTGYELMIHMAYTDTLTGLPNRRRLYEELCRLIGMADRYGQEFCVCLFDIDHFKQLN 257

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH VGD+V+  ++   +         GR GGEEFA     +S  +A +  + +R  +
Sbjct: 258 DQHGHLVGDQVLCAIAQTALPHLRAVDHFGRWGGEEFAILLPQTSLSDAQMALDRVRMAL 317

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +   IN++  P+I  T S G+AE    +   +I++RADQ++Y+AK +GRNR+V   D+E
Sbjct: 318 QA--INLADVPTI--TASFGVAEYLPGDTSESILHRADQSMYLAKTTGRNRIVVDGDVE 372


>gi|88857866|ref|ZP_01132508.1| hypothetical protein PTD2_10789 [Pseudoalteromonas tunicata D2]
 gi|88819483|gb|EAR29296.1| hypothetical protein PTD2_10789 [Pseudoalteromonas tunicata D2]
          Length = 324

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 97/183 (53%), Gaps = 17/183 (9%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQIN 143
           KEL  + +++  LSRID L+GL N   +  SL    ++L        ++  D+D+FK+IN
Sbjct: 143 KELEEANHKLESLSRIDRLTGLYNRGFWEESLKKEAKRLQRNEGQSCLLMLDVDHFKRIN 202

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGH  GD  +  ++D L         +GR GGEEFA   + +  +   + A  +RKI+
Sbjct: 203 DEFGHSGGDAALRHIADVLKKTLRESDLIGRFGGEEFAVTLVDTDVEGGKVFAERVRKIL 262

Query: 204 ENSQINISSGPSIHITISAGIAER-----CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             S I I     I +TIS G+A        H++ I+     AD+ALY +K++GRNRV  +
Sbjct: 263 AESTI-IFDNNQIKLTISLGLAPYKKSYLQHEQWIAD----ADKALYYSKENGRNRVTVY 317

Query: 259 SDI 261
             I
Sbjct: 318 DAI 320


>gi|289208876|ref|YP_003460942.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           K90mix]
 gi|288944507|gb|ADC72206.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           K90mix]
          Length = 791

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/150 (40%), Positives = 82/150 (54%), Gaps = 8/150 (5%)

Query: 112 LLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           LL+  A  +    Y    S++  DID+FK+IND FGH VGD+V+ FL   L         
Sbjct: 649 LLDQEARRAQ--RYAHPCSLLLLDIDHFKRINDTFGHEVGDEVLRFLVHALKGRLREADV 706

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHK 230
           +GR GGEEF     G+  +    +A  LR+     Q+  ++ P +  +TIS G+AE    
Sbjct: 707 LGRWGGEEFVVLLPGTDAERGQHVAEQLRE-----QVTATAFPCVGLVTISLGVAECRPG 761

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           E I   + RAD+A+YVAKK GRNRVV   D
Sbjct: 762 ESIRDWVKRADEAMYVAKKGGRNRVVRLDD 791


>gi|83312550|ref|YP_422814.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82947391|dbj|BAE52255.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Magnetospirillum magneticum AMB-1]
          Length = 477

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 89/169 (52%), Gaps = 9/169 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +++  L+  D L+G LN  AF       +     Y   +S++  DID+FKQ+ND  GH V
Sbjct: 309 SQLRHLATTDELTGCLNRRAFFVAAEQELERASRYGNAVSVLMIDIDHFKQVNDRHGHAV 368

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDK +   +  +          GRLGGEEFAA    ++   A ++A  LR+ +E   + +
Sbjct: 369 GDKALKAATAAIRANLREIDSFGRLGGEEFAAMLPETTLAGALLVAERLRQAVEAIALPL 428

Query: 211 SSG-PSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
               P + +T S G+AER   E  +  ++ RAD ALY AK  GRNRV+ 
Sbjct: 429 GDDQPPLRLTTSLGVAERQPGEVAVDQVLARADTALYRAKAEGRNRVLA 477


>gi|56475890|ref|YP_157479.1| hypothetical protein ebA864 [Aromatoleum aromaticum EbN1]
 gi|56311933|emb|CAI06578.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 313

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 91/175 (52%), Gaps = 20/175 (11%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + QL+  D L+G+LN   F       I         L+++  DID+FK+IND FGH VGD
Sbjct: 144 LRQLATTDPLTGILNRRRFTELTTQEIHRAHRLRHPLTLIMLDIDWFKRINDAFGHTVGD 203

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-----AALGSSEQEAAILANDLRKIIENSQ 207
           +VI  L+            +GRLGGEEFA       A GS E     +A  LR+ +E  Q
Sbjct: 204 RVIQSLASACASELREIDILGRLGGEEFAVVLPELGASGSLE-----VAERLRQKVEGLQ 258

Query: 208 INISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           I ++ G  +  T S G+A  +   + P  T++ RAD ALY AK+ GRN V   SD
Sbjct: 259 ITLNDGRIVRFTCSLGVAVLKDTDQSP-DTLLVRADNALYRAKRDGRNCVRAASD 312


>gi|134300533|ref|YP_001114029.1| diguanylate cyclase [Desulfotomaculum reducens MI-1]
 gi|134053233|gb|ABO51204.1| diguanylate cyclase [Desulfotomaculum reducens MI-1]
          Length = 417

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/203 (35%), Positives = 106/203 (52%), Gaps = 17/203 (8%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128
           ++VI+S  I +LLG I       LF +   +S+   +D L+ L N       L S   + 
Sbjct: 217 NIVIMSFGIIVLLGGII------LFFASKILSKPLYMDELTKLFNREYMKIRLESEIRRA 270

Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                 LS +  D+DYFK IND FGH  GD ++  +S+ + V         R GGEE A 
Sbjct: 271 RRNKLPLSFLMLDLDYFKSINDCFGHQTGDLILKKISELICVSLREEDLAFRYGGEEIAI 330

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRAD 241
               +   EA I+A  LR++IE + + ++     IH+TIS G+AE   K+   T+I +AD
Sbjct: 331 LLPETGLYEAKIVAERLRQVIETNSLYVNHYEEPIHVTISIGLAELAAKDTQETLIKKAD 390

Query: 242 QALYVAKKSGRNRVVCFSDIENN 264
            ALY+AKK GRN   C+  IE +
Sbjct: 391 DALYLAKKKGRN---CYQCIEES 410


>gi|170727199|ref|YP_001761225.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella woodyi ATCC 51908]
 gi|169812546|gb|ACA87130.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella woodyi ATCC 51908]
          Length = 415

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 94/174 (54%), Gaps = 13/174 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ + + +D L+G+ N   F       +  +      L++   DID+FK++ND +GH +
Sbjct: 247 RKLWEQANLDYLTGVYNRRYFFNLFEEQLQQIEQKKTSLTLALLDIDFFKKVNDTYGHDI 306

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+   + +L   FG    V R GGEEF  A  G +E +   L +  R  +E   I  
Sbjct: 307 GDEVLVEFAARLKHFFGQHFTVARFGGEEFTVAFRGLNEDKVFSLMDKFRAQLEVEAIQT 366

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           S GP I++T+S GIA     E +  ++ RAD+ALY AK+ GRN +VC   IE N
Sbjct: 367 SQGP-INVTVSTGIAG-LSDESLDNLLQRADKALYDAKELGRN-LVC---IEGN 414


>gi|227112979|ref|ZP_03826635.1| hypothetical protein PcarbP_08458 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 490

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 90/166 (54%), Gaps = 8/166 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAF---ISSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ Q++  D L+GL+N  AF      LG+ N    + LSI+  DID+FK+IND +GH VG
Sbjct: 324 RLEQMATTDKLTGLMNRQAFDYLFRRLGTKNALQHKSLSIILIDIDHFKKINDKYGHNVG 383

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  +S  L     +     R GGEEF           A   A  LR+ IE + I   
Sbjct: 384 DLVLKEISAILSANTRSSDQSCRWGGEEFVILLDDCDINAAQQRAEALRQSIEITHIPYR 443

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            G  I +T S G+AE    E ++T+I RAD ALY AK+ GRN+VV 
Sbjct: 444 EGI-IQVTASCGVAEYRAGETLNTLINRADIALYQAKQQGRNQVVS 488


>gi|119774894|ref|YP_927634.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B]
 gi|119767394|gb|ABL99964.1| diguanylate cyclase [Shewanella amazonensis SB2B]
          Length = 355

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 91/180 (50%), Gaps = 13/180 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDN 145
           L  L      +S +S  D L+GL N  AF S L         K S++  DID+FKQ ND 
Sbjct: 180 LNHLRAEITELSVISLTDKLTGLNNRRAFESRLAQEFLPSTPKCSLLVIDIDHFKQFNDT 239

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GDKV+ +++  L         V R GGEEF      +S ++AA +A  LR  I N
Sbjct: 240 WGHNAGDKVLVYVAQNLKQAVKGEDLVARYGGEEFVIVLKDTSAEDAANIAEKLRDRIAN 299

Query: 206 SQI-----NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            ++     N+  G    +++S G+A+    E       RAD ALY AK +GRNR VC +D
Sbjct: 300 KKLTLKKDNLDLG---KVSVSIGVAKAYANETPEQFFERADGALYRAKGTGRNR-VCLAD 355


>gi|114776533|ref|ZP_01451578.1| diguanylate cyclase (GGDEF domain) [Mariprofundus ferrooxydans
           PV-1]
 gi|114553363|gb|EAU55761.1| diguanylate cyclase (GGDEF domain) [Mariprofundus ferrooxydans
           PV-1]
          Length = 767

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 90/165 (54%), Gaps = 13/165 (7%)

Query: 103 LSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +S  D LSGL N        +A  +S+  Y   +S++  DID+FK++ND FGH VGD V+
Sbjct: 607 ISNTDKLSGLYNRVKMDSVLTAQKASVDRYQNNVSLIMIDIDFFKEVNDTFGHAVGDTVL 666

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQINISSGP 214
             LSD +        ++GR GGEEF      +   +A ILA  L RK+ + +   + +  
Sbjct: 667 ITLSDIMKNNVRATDYLGRWGGEEFLIVCPNTGLTDAGILAEKLVRKVSQQAFDQVGT-- 724

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              +TISAG+A    +  I   + + D+ALY +K+SGRNRV  F 
Sbjct: 725 ---VTISAGVASFSKESTIEDSLLQVDKALYQSKQSGRNRVTIFQ 766


>gi|27367767|ref|NP_763294.1| putative diguanylate cyclase [Vibrio vulnificus CMCP6]
 gi|27359340|gb|AAO08284.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS domain [Vibrio vulnificus CMCP6]
          Length = 357

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 100/192 (52%), Gaps = 12/192 (6%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLS 130
           +  L  +++  + K   I  N++ +L+ ID L+G LN  AF+ +          Y+   +
Sbjct: 167 LETLANWVAAQVHKHQQI--NKMIELAHIDPLTGALNRRAFVEATYFINDKPRHYDHHTA 224

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D FK+IND FGHP GDKV+  ++  L     +   + R GGEEFA      + +
Sbjct: 225 LLMIDLDKFKEINDQFGHPAGDKVLMQIAATLKKQIRSDDLLARFGGEEFAILLHHVNAE 284

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKK 249
           EA  LA  LR  +E   I       I  T+S GIA      +    ++  AD ALYVAK+
Sbjct: 285 EAMTLAETLRVTVEQLTIEHHQH-RIQCTVSIGIALPSSPNQGFEELMQLADNALYVAKR 343

Query: 250 SGRNRVVCFSDI 261
           SGRN+++  SD+
Sbjct: 344 SGRNQII-LSDM 354


>gi|325282992|ref|YP_004255533.1| diguanylate cyclase [Deinococcus proteolyticus MRP]
 gi|324314801|gb|ADY25916.1| diguanylate cyclase [Deinococcus proteolyticus MRP]
          Length = 558

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 10/164 (6%)

Query: 103 LSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+R D L+G+ N           +  L +  + L ++  D+D+FK+INDN  H VGD+V+
Sbjct: 383 LARRDSLTGITNRRGADEALPGLLHQLRAPTQSLHLMLIDLDHFKRINDNHSHAVGDRVL 442

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L+  L  V G      R GGEEF  A  G+  +EA  +A  +R  +   Q+ +   P 
Sbjct: 443 QSLAKLLPEVAGLDALSARYGGEEFLVALSGARNEEARRVAEQIR--LRTMQL-VWDVPG 499

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +T+S G+      + + ++I RAD+ALY AK SGRNRVV  +
Sbjct: 500 LRVTVSVGLTRAVLHDTVGSLIARADEALYRAKHSGRNRVVELA 543


>gi|300856263|ref|YP_003781247.1| membrane associated GGDEF domain-containing protein [Clostridium
           ljungdahlii DSM 13528]
 gi|300436378|gb|ADK16145.1| membrane associated GGDEF domain containing protein [Clostridium
           ljungdahlii DSM 13528]
          Length = 374

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/181 (37%), Positives = 95/181 (52%), Gaps = 10/181 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEK---LSIVFFDIDYFK 140
           L + F  Y +    + ID L+GL N   F  SL          EK   LS++  DIDYFK
Sbjct: 182 LTKTFEVYKKYRTEASIDFLTGLNNVRWFNKSLNRISIAMEKKEKIKCLSLILLDIDYFK 241

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD V+  L++ L         V R GGEEF+   L     +A  +A  +R
Sbjct: 242 KINDKYGHSSGDIVLKNLANILNDTCRAFNIVSRNGGEEFSVLLLNYPAADAVQVAERIR 301

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           K IE    +IS G ++HITIS+G++      + I  ++   D ALY AK +GRN+VV + 
Sbjct: 302 KNIEAYPFHISDGITVHITISSGVSTYPSTTDNIDNLLDDTDTALYEAKNTGRNKVVLYK 361

Query: 260 D 260
           +
Sbjct: 362 E 362


>gi|224827064|ref|ZP_03700161.1| diguanylate cyclase with GAF sensor [Lutiella nitroferrum 2002]
 gi|224600730|gb|EEG06916.1| diguanylate cyclase with GAF sensor [Lutiella nitroferrum 2002]
          Length = 631

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 106/218 (48%), Gaps = 15/218 (6%)

Query: 52  YIGLTPFYGLEYILVENLSLV-----IISITISLLLGYISGSILKELFISYNRISQLSRI 106
           YIG   + G E     N S           +  LL  ++  +I ++  IS  R   ++  
Sbjct: 412 YIGTPTWVGGELYGTVNFSSTKPYGRTFDRSXXLLGRWVGIAIAEDRSISTLR--SIATT 469

Query: 107 DCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G++    F             Y  +LS+   D+DYFK+IND+FGH  GD+ +  ++
Sbjct: 470 DELTGVMRRGHFTEIAEKEFGRTKRYGGRLSMFLIDLDYFKRINDSFGHYGGDETLKRVA 529

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
                V  +   +GRLGGEEFA     + E EA  +A  LR  +E S I   SG  I +T
Sbjct: 530 IVFQQVLRSSDILGRLGGEEFAVLLPNTPESEAKEVAERLRHEVEESTIQALSG-EIRVT 588

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IS G+AE   ++  + I  R D ALY AK+ GRN VV 
Sbjct: 589 ISIGVAELAAEDDFTAIYNRCDAALYEAKRRGRNCVVA 626


>gi|320158046|ref|YP_004190424.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS domain [Vibrio vulnificus MO6-24/O]
 gi|319933358|gb|ADV88221.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS domain [Vibrio vulnificus MO6-24/O]
          Length = 357

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 100/192 (52%), Gaps = 12/192 (6%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLS 130
           +  L  +++  + K   I  N++ +L+ ID L+G LN  AF+ +          Y+   +
Sbjct: 167 LETLANWVAAQVHKHQQI--NKMIELAHIDPLTGALNRRAFVEATYFINDKPRHYDHHTA 224

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D FK+IND FGHP GDKV+  ++  L     +   + R GGEEFA      + +
Sbjct: 225 LLMIDLDKFKEINDQFGHPAGDKVLMQIAATLKKQIRSDDLLARFGGEEFAILLHHVNAE 284

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKK 249
           EA  LA  LR  +E   I       I  T+S GIA      +    ++  AD ALYVAK+
Sbjct: 285 EAMTLAETLRVTVEQLTIEHHQH-RIQCTVSIGIALPSSPNQGFEELMQLADNALYVAKR 343

Query: 250 SGRNRVVCFSDI 261
           SGRN+++  SD+
Sbjct: 344 SGRNQII-LSDM 354


>gi|323699094|ref|ZP_08111006.1| diguanylate cyclase [Desulfovibrio sp. ND132]
 gi|323459026|gb|EGB14891.1| diguanylate cyclase [Desulfovibrio desulfuricans ND132]
          Length = 257

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 112/220 (50%), Gaps = 18/220 (8%)

Query: 48  IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107
           + L  + L P        +   S+++++I +     + +   ++ L  + ++I+ L+  D
Sbjct: 30  LALLPVSLLPARSWAVAALLTGSILVLAIAL-----FCASRFMRLLEGANDKIAALTTHD 84

Query: 108 CLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+GL N + F       IS  G Y  +LS+V  D+D FK +ND FGHP+GD+ +A ++ 
Sbjct: 85  DLTGLPNRNWFFDRLDQEISRAGRYGNRLSLVMVDLDRFKGVNDAFGHPLGDQTLAEVAR 144

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            L           R GGEEF      +   +AA  A  LR ++E + I++  GP + +TI
Sbjct: 145 LLAANIRASDVAARYGGEEFMIILPETCAGQAARAAEKLRMVVEVNDISL-EGPEVKVTI 203

Query: 221 SAGIAERCHKEP-----ISTIIYRADQALYVAKKSGRNRV 255
           S G+A+     P        ++  AD+A++ AK +GRN+V
Sbjct: 204 SCGVADLASVRPGRGTLRDALVAAADRAMHRAKLNGRNQV 243


>gi|205374857|ref|ZP_03227650.1| diguanylate cyclase [Bacillus coahuilensis m4-4]
          Length = 466

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 9/171 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +++   +  D L+G+ N  AF              +   +I+  DIDYFK++ND +GH V
Sbjct: 291 SQLEHFAYYDELTGIYNRRAFFQYCEEAFQESKEQDTPFTIILMDIDYFKKVNDTYGHSV 350

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  ++              R GGEEF     G +E+E A LA  LR  +E   I+ 
Sbjct: 351 GDQVLEQVAKVCQSQLHGHELFARYGGEEFVLGVKGYTEEEGAALAEQLRSEVEALTIHT 410

Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             G  I +T+S G+A    + E +  I+  ADQALY AK++GRNRV  + +
Sbjct: 411 PDG-KITVTLSLGVAALTKEDEALYQILNHADQALYRAKEAGRNRVCVYQN 460


>gi|149182640|ref|ZP_01861109.1| hypothetical protein BSG1_13246 [Bacillus sp. SG-1]
 gi|148849663|gb|EDL63844.1| hypothetical protein BSG1_13246 [Bacillus sp. SG-1]
          Length = 364

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 89/169 (52%), Gaps = 8/169 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           YN   QLS  D L+ L NH  F   +  L   +EK+S+   D+DYFK  ND FGHP GD 
Sbjct: 186 YNDFKQLSIKDGLTNLYNHRFFQQKLDELLKSDEKVSLFLLDLDYFKIYNDKFGHPQGDT 245

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  +SD LV       FV R GGEEFA        ++A  L   +R  I   +   S  
Sbjct: 246 LLREVSDLLVECTPEDAFVCRYGGEEFAVILPEMDIKDAKELGEKVRTSIYTKEFFGSED 305

Query: 214 -PSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFS 259
            P  HIT+S GI+   H EP+    +I  AD ALY AKK+ RN+VV  S
Sbjct: 306 MPFKHITVSLGISSN-HTEPVPKGKLIKAADLALYEAKKT-RNKVVMSS 352


>gi|294341557|emb|CAZ89974.1| hypothetical protein; putative PAS and GGDEF domains [Thiomonas sp.
           3As]
          Length = 420

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 89/164 (54%), Gaps = 5/164 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            R+  L+  D L+G+ N S+ +     L      LS++  D+DYFK+IND FGH  GD+V
Sbjct: 250 RRLKHLATFDSLTGIHNRSSILGILERLLQRRPPLSVLLLDLDYFKRINDGFGHAAGDRV 309

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +      +     +  F GRLGGEEF     G+ E EA  +A  LR  +    I ++ G 
Sbjct: 310 LCRFVQIIEGEKRSRDFFGRLGGEEFLLILDGADEAEAGQIAERLRAAVSAEAIALAEGE 369

Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++ +TIS G+ + R      + ++ RAD+ALY AK+ GRN  VC
Sbjct: 370 AVALTISFGMTQSRSGDTRTADVLVRADRALYRAKQMGRN-CVC 412


>gi|262274845|ref|ZP_06052656.1| GGDEF family protein [Grimontia hollisae CIP 101886]
 gi|262221408|gb|EEY72722.1| GGDEF family protein [Grimontia hollisae CIP 101886]
          Length = 557

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 94/178 (52%), Gaps = 13/178 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +  +S +   D L+GLLNHS         +S    + + +S V  DID+FK IND +GHP
Sbjct: 374 FRALSAMMDRDSLTGLLNHSNLKMALERELSRACRHKKPISFVMIDIDHFKSINDQYGHP 433

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGDKVI  ++  L   F       R GGEEFA     +    A  L ++ R     S+  
Sbjct: 434 VGDKVIKGVARLLNYRFRKTDTSARYGGEEFALILPDTPADIALRLIDEFRNTF--SKTP 491

Query: 210 ISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S+GP + + T+SAGIA     + +  +I  AD +LY+AKK GRNRVV   ++   TC
Sbjct: 492 FSNGPETFYATLSAGIATFPEFDTVEALIEAADSSLYLAKKQGRNRVVTHVEL---TC 546


>gi|325568972|ref|ZP_08145265.1| ABC superfamily ATP binding cassette transporter, binding protein
           [Enterococcus casseliflavus ATCC 12755]
 gi|325158010|gb|EGC70166.1| ABC superfamily ATP binding cassette transporter, binding protein
           [Enterococcus casseliflavus ATCC 12755]
          Length = 350

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/213 (35%), Positives = 107/213 (50%), Gaps = 37/213 (17%)

Query: 76  ITISLLLG-YISGSILKE--LFISY------------------NRISQLSRIDCLSGLLN 114
           I IS L G Y++G I K   ++I Y                   RI  L +ID L+ L N
Sbjct: 145 IAISFLFGFYLTGDIQKTTLIYIVYGILAYTLAFFLYSIVNDMQRILALVKIDDLTQLNN 204

Query: 115 HSAFISS---LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT--- 168
              F      L +    LSI   DID+FK  ND +GH  GD ++     ++  +F T   
Sbjct: 205 FRKFQDDRQRLDTTEVDLSIALIDIDHFKNYNDRYGHRAGDVIL----QEIARIFSTYCT 260

Query: 169 ---PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
              P++  R+GGEEFA    G + Q AA L   ++K I   +I + +G S+ IT+S GIA
Sbjct: 261 ASNPVY--RIGGEEFAILIQGDA-QAAAYLLEKIQKRIRYQEIILDAGDSVSITLSIGIA 317

Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +R   E +     RADQALY AK+SGR+++  +
Sbjct: 318 QRQRGELLQQTQERADQALYRAKRSGRDQLCLY 350


>gi|114570365|ref|YP_757045.1| diguanylate cyclase [Maricaulis maris MCS10]
 gi|114340827|gb|ABI66107.1| diguanylate cyclase [Maricaulis maris MCS10]
          Length = 379

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 92/180 (51%), Gaps = 10/180 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           K   IS     + +  D L+G  N +A    L +  ++        ++V FD+D+FK++N
Sbjct: 191 KAAEISMAHFRERAATDALTGAANRAAIDQILAAETDRHRETGIPFAVVVFDLDHFKRVN 250

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGH  GD+V+      +     T   +GR+GGEEF     G S Q+A ++A  +RK+I
Sbjct: 251 DTFGHLAGDRVLIETVRVVKQALRTSDMLGRIGGEEFVVVLPGVSGQQARLMAERMRKMI 310

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV---VCFSD 260
               I +    S+  T S G+ E       + ++ RAD+ LY AK+ GRNRV   +C SD
Sbjct: 311 AAISIQVDGRGSVSPTASFGVTECDVNASATDLLARADEYLYRAKRGGRNRVEPELCSSD 370


>gi|145298252|ref|YP_001141093.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851024|gb|ABO89345.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 380

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 116/226 (51%), Gaps = 16/226 (7%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
           F+  ++    F   + L ++     YGL   +V++L L+   +  +     ++ +  + L
Sbjct: 164 FYGRWVQPGAFYRPLLLSWL----VYGLLLFMVQHL-LMRDRLRKAREARQVAEARSQSL 218

Query: 94  FISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
                R  + +R D L+G LN    +  ++ LG  +  LS ++ DID+FK +ND  GHPV
Sbjct: 219 CEQTLRTEEEARYDPLTGALNRFGGNKLLAELG--DMPLSFIYIDIDHFKLVNDGHGHPV 276

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  +  +++    +   + R GGEEF    L   +  A  LA  LR  +    +  
Sbjct: 277 GDEVLKHMVSEVLRHCDSLCRLVRWGGEEFVLVCLHYEQARAKALAERLRAAL----VAY 332

Query: 211 SSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              P ++ IT S G+AER   +P+  ++ RAD+ALY AKK GRNRV
Sbjct: 333 PHWPLALSITASFGVAER-RGDPLEQVLKRADEALYQAKKRGRNRV 377


>gi|89093074|ref|ZP_01166025.1| diguanylate cyclase (GGDEF domain) [Oceanospirillum sp. MED92]
 gi|89082724|gb|EAR61945.1| diguanylate cyclase (GGDEF domain) [Oceanospirillum sp. MED92]
          Length = 747

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 91/167 (54%), Gaps = 12/167 (7%)

Query: 95  ISYNRISQ-LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNF 146
           +SYNR+ Q ++  D L+G+ +     S + S+       N  LS+VFFDID FKQIND +
Sbjct: 580 LSYNRMLQTIAEKDALTGICSRHKLRSEMDSFVDLANRHNWNLSMVFFDIDDFKQINDQY 639

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD V+  LS  +  +       GR GGEEF    L +  ++A  +A+  R  IEN+
Sbjct: 640 GHASGDIVLVELSKLVSKMSRKTDRFGRWGGEEFLFIMLETDFEDARKIADKFRDKIENA 699

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           ++ +       IT S G+A+    E +   + RAD ALY AK +G+N
Sbjct: 700 ELGVGQ----PITCSMGVAQYIRGETVEQWVARADTALYEAKAAGKN 742


>gi|319783812|ref|YP_004143288.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169700|gb|ADV13238.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 355

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 86/166 (51%), Gaps = 8/166 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-YNEKLSIVF-----FDIDYFKQINDNFGHPVGDKVI 155
           +L+  D L+ + N  AF   +   YN    I+F      DID FK IND FGHPVGDK+I
Sbjct: 174 RLADTDPLTHIWNRRAFDKEITRIYNSNRGILFNALVLADIDRFKDINDRFGHPVGDKII 233

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++D         MFV R GGEEFA    G+SE     +A  +R +IE +    S   +
Sbjct: 234 QSIADIFQTSIRGDMFVARTGGEEFALIVEGASEDATYDVAERIRALIEQTPFTSSQTGT 293

Query: 216 IH--ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +  +T+S GI      E    +  +AD+ALY +K SGRNRV   S
Sbjct: 294 NYGTVTVSMGICMASEAEGPEDLYTKADRALYRSKVSGRNRVTRHS 339


>gi|163750477|ref|ZP_02157716.1| sensory box/GGDEF family protein [Shewanella benthica KT99]
 gi|161329798|gb|EDQ00786.1| sensory box/GGDEF family protein [Shewanella benthica KT99]
          Length = 321

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 111/221 (50%), Gaps = 21/221 (9%)

Query: 57  PFYGLEYILVENLSLVIIS------ITISLLLGYISGSILKELFISY--NRISQLSRIDC 108
           P  G    + +N++L+ +S        IS+++  ++   + +L +     R+  LS+ D 
Sbjct: 101 PITGRADFMYQNVTLLPLSSLTGQITHISMIVYDVTDVAIHKLQLKAVNERLEHLSQTDG 160

Query: 109 LSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ L N   +             Y +K S+V FDID+FK++ND +GH  GDKVI  +S  
Sbjct: 161 LTQLHNRRYWQICMQKEFDRHARYGDKTSLVMFDIDHFKKVNDTYGHMAGDKVIQHISHL 220

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L          GR GGEEFA     +S ++A   A  LR  I  +++ I  G  I +T+S
Sbjct: 221 LKQSLRETDCAGRYGGEEFAVVLAKTSAKDALNFAERLRHKIATTEL-IYEGEPIKVTVS 279

Query: 222 AGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFS 259
            GI++   +E I      +  ADQALY AKK+GRN  V + 
Sbjct: 280 IGISDL--QEQIGNSGQWLSFADQALYQAKKAGRNNCVIYK 318


>gi|134096466|ref|YP_001101541.1| putative signal peptide [Herminiimonas arsenicoxydans]
 gi|133740369|emb|CAL63420.1| Conserved hypothetical protein; putative GGDEF domain
           [Herminiimonas arsenicoxydans]
          Length = 492

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 88/167 (52%), Gaps = 8/167 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-----ISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPV 150
            R+ Q++  D L+GLLN  AF      + L S   +  LS + FDID+FK +NDN GH  
Sbjct: 317 RRLEQIAGTDTLTGLLNRQAFEIVFQQAILDSERRRIPLSAILFDIDFFKMVNDNHGHLA 376

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+++  ++            V R GGEEF         ++A  LA  +R +I      +
Sbjct: 377 GDRILQSIAAITKNAVRESDIVTRWGGEEFLVLLKDCPLEQATALAEKIRSMIAGHDFEL 436

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +  ++H+T+S G+AE  ++E   +   RAD ALY AK  GRNRV+ 
Sbjct: 437 PAS-ALHLTVSLGVAEYAYRETWLSFFGRADTALYQAKSEGRNRVIV 482


>gi|242280482|ref|YP_002992611.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens
           DSM 2638]
 gi|242123376|gb|ACS81072.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens
           DSM 2638]
          Length = 779

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 92/166 (55%), Gaps = 9/166 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
           +++ +L+  D L+GL N   F+ S          Y   LS++  DIDYFK +ND +GH  
Sbjct: 603 DKLRKLATTDSLTGLSNRRFFMESAEDALERTRRYGRDLSLLMMDIDYFKTVNDMYGHDA 662

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  LS   + +       GR+GGEEF+     +    A ++A  LR  IE +++N 
Sbjct: 663 GDDVLKGLSKTGLKILRNIDVFGRIGGEEFSILLPDTGLDGATLVAERLRAEIETTKMNT 722

Query: 211 SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
            SG S++IT+S G+A    H + +  ++  AD  LY AK++GRN+V
Sbjct: 723 RSG-SLNITVSIGVATYSEHTKTLEQLLKAADIGLYAAKEAGRNQV 767


>gi|50119607|ref|YP_048774.1| putative signaling membrane protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610133|emb|CAG73573.1| putative signaling membrane protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 489

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 93/177 (52%), Gaps = 15/177 (8%)

Query: 94  FISYNR-----ISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFK 140
           F+S NR     I   S  D L+   N  AF+S L             +++++F DIDYFK
Sbjct: 305 FVSMNRRLIKIIESNSLKDALTNTFNRRAFLSMLNVRQGVLMNKRKRQITLLFLDIDYFK 364

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND +GH  GD++IA  +  L         + R GGEEF  AA   +++++  +A  LR
Sbjct: 365 QVNDTYGHACGDELIASFARMLSANIRPSDILCRWGGEEFIIAAYDLTDEQSEAMAEALR 424

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRV 255
           ++ E++ + +S G  I+ T+S G+A     E   I  +I  AD+ LY AK  GRN V
Sbjct: 425 RLTESTPLMLSDGREIYFTVSIGVAIFSQYEGGNIYDLIGLADEQLYKAKAQGRNCV 481


>gi|34496267|ref|NP_900482.1| hypothetical protein CV_0812 [Chromobacterium violaceum ATCC 12472]
 gi|34330290|gb|AAQ58487.2| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 383

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 9/162 (5%)

Query: 102 QLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+ L N   FI            +  ++S++  D+D+FK IND++GH VGD+V
Sbjct: 214 RLATQDGLTELNNRRQFIELADREIERSRRHGSRMSVLMMDLDHFKDINDHYGHAVGDEV 273

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           I   S     V       GRLGGEEFAA    +   +A  +A  LR +  +++++  SG 
Sbjct: 274 IRHFSQVCREVLRASDLCGRLGGEEFAAVLPDTGLDDARQVAERLRSLASSARLSAVSG- 332

Query: 215 SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
           S+  T+S G+AER   E  I  ++ RAD+ LY AK+ GRNRV
Sbjct: 333 SLGYTVSIGVAERHADETDIDEVLGRADKQLYQAKRDGRNRV 374


>gi|304321912|ref|YP_003855555.1| hypothetical protein PB2503_11844 [Parvularcula bermudensis
           HTCC2503]
 gi|303300814|gb|ADM10413.1| hypothetical protein PB2503_11844 [Parvularcula bermudensis
           HTCC2503]
          Length = 377

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/163 (39%), Positives = 91/163 (55%), Gaps = 11/163 (6%)

Query: 102 QLSRIDCLSGLLNHSAFI--------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            L+  D LSG LN  AF          SL  +N  LS V  DID+FK++ND +GH VGD+
Sbjct: 183 DLAMTDPLSGALNRRAFTILAQREVRRSLRHHN-ALSAVMVDIDHFKRVNDTYGHAVGDE 241

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           VIA ++  +  +      +GRLGGEEF      +  ++A  + + L + I        SG
Sbjct: 242 VIASVAALINRIKRQEDLLGRLGGEEFGLILPDTDIEQALRMTDRLIEAIRGLSFTGGSG 301

Query: 214 PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  IT S G+A  R H +P+S  + RAD+ALY AK++GRNRV
Sbjct: 302 -TFRITASLGVASLRGHDDPLSEFLRRADEALYKAKENGRNRV 343


>gi|253690024|ref|YP_003019214.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251756602|gb|ACT14678.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 362

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 101/193 (52%), Gaps = 17/193 (8%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LS+VI+S+ +  LL  ++   L EL I       ++R D L+G L   AF  +       
Sbjct: 175 LSVVILSVILGSLLSLLAKKYLIELPI-------IARYDDLTGYLRRDAFFLAANKAFSI 227

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                  +S++  DIDYFKQ+ND+FGH VGD  + F++D     F      GR+GG+EFA
Sbjct: 228 ANLTKRPVSVILIDIDYFKQVNDSFGHSVGDDALKFVADTFKKSFRREDIFGRIGGDEFA 287

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRA 240
                +   +A  + +  R+ + N+    ++G  I +T+S G+ E    KE +  ++ RA
Sbjct: 288 IVLPNTGIDDAYTIVDRARERVSNTPCETAAG-KIRLTVSIGLVEYHVAKEDLIEVMKRA 346

Query: 241 DQALYVAKKSGRN 253
           D  LY AKK+ RN
Sbjct: 347 DDNLYTAKKT-RN 358


>gi|291086281|ref|ZP_06571446.1| response regulator [Citrobacter youngae ATCC 29220]
 gi|291068734|gb|EFE06843.1| response regulator [Citrobacter youngae ATCC 29220]
          Length = 558

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/162 (40%), Positives = 85/162 (52%), Gaps = 12/162 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+SQ    D LSGL NHS     L S             +V  D+D FK IND +GH VG
Sbjct: 396 RMSQ----DSLSGLYNHSTTTHYLKSAIAESNYSGNPFCMVMVDLDRFKSINDTYGHAVG 451

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+VI  +S        +   VGR GGEEF     G+S  +AA +   LR+  E    +++
Sbjct: 452 DQVIVGISQLFSHRLRSTDIVGRYGGEEFVIIMPGTSSDKAARVVERLRRDYEQVTFSVN 511

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
              S H T SAGIA+    + + T+  RADQALY AK++GRN
Sbjct: 512 DA-SFHSTFSAGIAQWQFGDRVETLRERADQALYAAKQNGRN 552


>gi|172065325|ref|YP_001816037.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
 gi|171997567|gb|ACB68484.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
          Length = 506

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 12/175 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPVG 151
           ++ L+R D L+GL N  A  ++L    E+L        S++F D D+FKQ ND +GH  G
Sbjct: 328 LTDLTRTDPLTGLHNRRALDAALADEWERLQRGSDGSLSVLFIDADHFKQYNDRYGHAQG 387

Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209
           D  + FL++ +            R GGEEF A    + E+ A  +A  +R  +E ++++ 
Sbjct: 388 DTALRFLAECIRAHTRRRGDLAARYGGEEFVAVLPDTDERGAQQVAEAIRGAVERNRLDG 447

Query: 210 -ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             ++ P+  ++I      R     +  + ++AD ALY AK+ GRNR VC +D+E+
Sbjct: 448 FDATMPAFTVSIGCATGHRARPPSVHALTHQADLALYAAKRQGRNR-VCVADVES 501


>gi|331017357|gb|EGH97413.1| GGDEF domain protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 322

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 112/214 (52%), Gaps = 10/214 (4%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L P   L   + +  + + + +   + +G+++  +  +L+   N +  LSR D L+GLLN
Sbjct: 99  LNPVVNLNGNMTQIYACLPVLVIYPIFIGWMNHQVTLKLWEHRNILRTLSRTDSLTGLLN 158

Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
           H A+   L        + +++  I   DID+FK IND +GH +GD V+  +S+ L+    
Sbjct: 159 HGAWKDLLDLEFAKSQNQHQECVIALIDIDHFKIINDTYGHLMGDTVLQNISEALIENLR 218

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
               +GR GG+EF      +S  +A  +   +R  I+  ++  S    +  ++S GIA  
Sbjct: 219 DSDLIGRCGGDEFCVILPNTSLLQAREILERMRLAID--ELTYSLHCDLKASLSVGIAAY 276

Query: 228 CHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + P  S+ ++ AD+ALY+AK +GRNRVV   D
Sbjct: 277 SPELPDASSWLHEADKALYLAKSTGRNRVVSAED 310


>gi|241766036|ref|ZP_04763954.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii 2AN]
 gi|241363963|gb|EER59238.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii 2AN]
          Length = 1152

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 60/170 (35%), Positives = 99/170 (58%), Gaps = 20/170 (11%)

Query: 100  ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGD 152
            + +L+  D L+GL N  AF++ L     + S       ++  D+D+FK++ND +GH  GD
Sbjct: 977  LERLATTDALTGLANRRAFMARLEEERMRPSMGGRGGMLIMLDLDHFKRVNDTWGHAAGD 1036

Query: 153  KVIAFLSDQLV--VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
            +V+  L+  L   ++  T +  GRLGGEEFA     ++ +EA  +A  LR+ +E S+I++
Sbjct: 1037 EVLVHLARLLRGDLLRATDL-AGRLGGEEFAVLLPDTTAEEALGVAERLRRALEQSKIHV 1095

Query: 211  SSGPSIHITISAGIAERCHKEPIS----TIIYRADQALYVAKKSGRNRVV 256
              G ++ +T+S G+A      PI+     ++  AD ALY AK +GRN+VV
Sbjct: 1096 GDGATLQVTMSLGVA------PITGDALAVLAHADIALYEAKNTGRNKVV 1139


>gi|186471654|ref|YP_001862972.1| diguanylate cyclase [Burkholderia phymatum STM815]
 gi|184197963|gb|ACC75926.1| diguanylate cyclase [Burkholderia phymatum STM815]
          Length = 202

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/186 (34%), Positives = 99/186 (53%), Gaps = 12/186 (6%)

Query: 81  LLGYISGSILKELFIS--YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
           L+G + G +L    +S   +R++    +D L+  LN  AF       ++   SY   L++
Sbjct: 5   LMGAVLGLVLPAAAMSDVIDRLTLERDLDSLTETLNRRAFERMAGRRVADRRSY--PLAL 62

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           + FDID FK IND +GH  GD V+   +  L         V R+GGEEF     G+ ++ 
Sbjct: 63  IAFDIDNFKSINDRYGHAAGDAVLRQFAAILRAAVREKDVVARIGGEEFVLLLPGADDKF 122

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A  +A  LR ++E+S+ N     ++ +T SAGIA     E +  ++ RAD  LY AK++G
Sbjct: 123 AYQIAERLRIVLESSRFNEIEA-TLRVTTSAGIARHRPGETVGALLARADHLLYAAKRAG 181

Query: 252 RNRVVC 257
           RNRVV 
Sbjct: 182 RNRVVT 187


>gi|307730162|ref|YP_003907386.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1003]
 gi|307584697|gb|ADN58095.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1003]
          Length = 421

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 86/161 (53%), Gaps = 5/161 (3%)

Query: 100 ISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           + + +  D L+GL N   F   I +L    +  S+   DID+FK+IND  GH  GD+V+ 
Sbjct: 258 LKEQATTDALTGLPNRRGFLQYIQTLLGDTDVFSVFILDIDFFKEINDEHGHDAGDEVLR 317

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INISSGPS 215
            L+     +   P    R GGEEF AA  G+  + A  +A+ LRK  E      +S    
Sbjct: 318 VLAKVGASMTSRPCLFARWGGEEFVAALPGADARRAYDIADALRKRYERQDFAQVSRLEP 377

Query: 216 IHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255
           I  T+S G+  R  +E  +  ++ RAD+ALY AK++GRNRV
Sbjct: 378 IPFTVSIGVVTREAREADVDALMKRADRALYRAKRAGRNRV 418


>gi|254492134|ref|ZP_05105309.1| GGDEF domain protein [Methylophaga thiooxidans DMS010]
 gi|224462686|gb|EEF78960.1| GGDEF domain protein [Methylophaga thiooxydans DMS010]
          Length = 252

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 97/170 (57%), Gaps = 9/170 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           N++  L+  D L+ LL+  AF++S       +   ++  SI + DID FK+IND++GH  
Sbjct: 76  NKMRYLASYDDLTELLSRRAFLTSSQKLFSLMNRSHKPFSIAYIDIDDFKKINDSYGHAA 135

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+   S  L V   +   VGR+GGEEFA A   +    AA +   +R++ E   +  
Sbjct: 136 GDEVLKSFSVILEVHTRSSDLVGRIGGEEFAIALPDTGAHGAARVVELIREVSEQQMLTT 195

Query: 211 SSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           SS  ++  TIS GI  ++    + +  +I +AD+ALY AK +G+NR++ F
Sbjct: 196 SSKATLSYTISIGISTSDSNKTQTLEQLIQQADRALYEAKVAGKNRIIQF 245


>gi|88861176|ref|ZP_01135809.1| hypothetical protein PTD2_00242 [Pseudoalteromonas tunicata D2]
 gi|88816769|gb|EAR26591.1| hypothetical protein PTD2_00242 [Pseudoalteromonas tunicata D2]
          Length = 603

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 102/183 (55%), Gaps = 15/183 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQI 142
           L+EL      + + + +D L+G+ N S F   L      S+ E+  L+++  DID+FK+I
Sbjct: 419 LQELEEKNRELEEKNTLDSLTGIRNRSYFDKKLTMEFRRSHREQTPLAVMMLDIDFFKKI 478

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD  I F++  +      P   V R GGEEFA     +  + A ++A  +R 
Sbjct: 479 NDTFGHLAGDDAIRFVAHTIQTSLKRPSDEVCRYGGEEFAVILPNTDTEGALLVAEAIRA 538

Query: 202 IIENSQINISSGPSIHITISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I  +Q++ ++G  I++TIS G    IA+R H+    T +  AD+ALY AK +GRN+VV 
Sbjct: 539 QISEAQVHTTAGI-INMTISVGLFSDIAQRNHEPNQYTAL--ADKALYQAKHAGRNQVVF 595

Query: 258 FSD 260
           + D
Sbjct: 596 YDD 598


>gi|45655763|ref|YP_003572.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|45602734|gb|AAS72209.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 561

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 92/171 (53%), Gaps = 12/171 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S N++S+L   D L+G+ N   F       I+    +  + +I+  DID+FKQ+ND FGH
Sbjct: 389 SMNQVSKLIHTDPLTGIWNRRGFLKLTQRSIALENRHKNEWAILMIDIDHFKQVNDRFGH 448

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GDK +  ++  L         V R GGEEFA    G  ++ +  +A +LRK +EN QI
Sbjct: 449 DAGDKTLIRVAQILSRSIRQTDVVCRWGGEEFAIFLCGVGQEISINIAEELRKEVEN-QI 507

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +  G    +T+S G++    K+ +      ADQALY AK SGRNRV  F+
Sbjct: 508 RLKDGNP--VTLSIGVS--GGKQNLEEAFTNADQALYQAKTSGRNRVCAFN 554


>gi|88703914|ref|ZP_01101629.1| GGDEF family protein [Congregibacter litoralis KT71]
 gi|88701741|gb|EAQ98845.1| GGDEF family protein [Congregibacter litoralis KT71]
          Length = 503

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 93/175 (53%), Gaps = 16/175 (9%)

Query: 98  NRISQLSRI---DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFG 147
            R+S L R    D L+G +N   F S L           + LS++F D D+FKQ+ND++G
Sbjct: 317 QRVSMLERQGQRDSLTGAINRGHFHSELDRLFDEATQSGQPLSLMFIDADHFKQVNDSYG 376

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+V+ +L++    + G    VGR GGEEF      S+E EA  L   +   + N  
Sbjct: 377 HLAGDEVLKWLAEAFTKLVGDKGIVGRYGGEEFVVILPASTEAEANALGQTICDHVRNGH 436

Query: 208 INISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I+     +I +T+SAGIA   +         +I+ ADQA+Y AK+SGR+  +C S
Sbjct: 437 ISAGDA-NIQVTVSAGIATIDKTSTLRGTRDLIFAADQAMYFAKQSGRD--LCIS 488


>gi|86138374|ref|ZP_01056948.1| Putative diguanylate cyclase (GGDEF domain) [Roseobacter sp.
           MED193]
 gi|85824899|gb|EAQ45100.1| Putative diguanylate cyclase (GGDEF domain) [Roseobacter sp.
           MED193]
          Length = 300

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/200 (34%), Positives = 101/200 (50%), Gaps = 9/200 (4%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           GLEY  ++ L  V +  T  L +G    S+  +L      IS+L+R D L+GLLN  A  
Sbjct: 98  GLEYGYLQPLRTVFVIATPCLFIGL---SLAVKLEAQREEISRLARTDVLTGLLNRGAMD 154

Query: 120 SSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
           + L S   N   S++  DID+FK +ND+FGH  GD+ +  ++  L  V    + + R GG
Sbjct: 155 AVLASAISNRAGSLLLMDIDHFKSVNDDFGHAAGDECLRAVAKFLRQVLPEEVELARWGG 214

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAGIAERCHKEPISTI 236
           EEF A        E A  AN   ++++   + I+     I IT S G+A      P+  +
Sbjct: 215 EEFVALVRRQQVSEVAPFAN---RLVKGFSLPITGRNQPIRITFSIGVANLSEVGPVDAL 271

Query: 237 IYRADQALYVAKKSGRNRVV 256
           +  AD  LY+AK  GR + V
Sbjct: 272 LKLADTRLYLAKSWGRAQWV 291


>gi|332994531|gb|AEF04586.1| GGDEF domain-containing protein [Alteromonas sp. SN2]
          Length = 319

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/159 (38%), Positives = 85/159 (53%), Gaps = 9/159 (5%)

Query: 104 SRIDCLSGLLNHSAFIS------SLGSYNEKLSI-VFFDIDYFKQINDNFGHPVGDKVIA 156
           SRID L+GL N   +         L    +K S  +  DID+FK++ND +GH  GDKVI 
Sbjct: 153 SRIDGLTGLFNRRYWQERFEQSYKLAKRQDKASTAMMLDIDHFKKVNDTYGHQAGDKVIQ 212

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            LS  +          GR GGEEFA     SS ++A I+A  +R++ E   +    G  I
Sbjct: 213 MLSALIKRCVRETDLAGRYGGEEFAVILTDSSVEKAVIVAERIRRLAERLVVE-HDGEEI 271

Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254
             T+S G+AE   H +     + +ADQALY AK+SGRN+
Sbjct: 272 TFTVSLGLAEFDPHSKSSMAWLEKADQALYEAKESGRNK 310


>gi|297537357|ref|YP_003673126.1| diguanylate cyclase [Methylotenera sp. 301]
 gi|297256704|gb|ADI28549.1| diguanylate cyclase [Methylotenera sp. 301]
          Length = 602

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 10/175 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           + EL    + IS+++  D L+G LN      ++    E+       LS+   DID+FK+I
Sbjct: 425 INELTTKLDYISEVAHEDFLTGALNRRGMDEAIEREFERADRHSTALSLAMIDIDHFKKI 484

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRK 201
           ND  GH  GD  +A L+  +  +  +   + R GGEEF     GS + +A  ++A   R 
Sbjct: 485 NDTMGHSTGDVALAHLAKVVKSILRSTDVLARYGGEEFVILLPGSKQDDAVNVIAGVQRD 544

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +N    + +   + IT SAG+AER   E +  ++ RAD ALY+AK++GRNRVV
Sbjct: 545 LTKN--FFMHNSERVLITFSAGVAERMTGESVDAVLPRADAALYLAKQTGRNRVV 597


>gi|209544655|ref|YP_002276884.1| PAS/PAC sensor-containing diguanylate cyclase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532332|gb|ACI52269.1| diguanylate cyclase with PAS/PAC sensor [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 464

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 91/169 (53%), Gaps = 11/169 (6%)

Query: 103 LSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           L+R+D L+GL N  AF   +        G  +   +++  DID FK IND +GH  GD V
Sbjct: 294 LARVDHLTGLPNRRAFTEGMEQAWQMLRGGVSRGGAVLMIDIDRFKTINDRYGHAAGDAV 353

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  L+       F GR+GGEEFAA    +   EA  +A  LR+ I  + +   S  
Sbjct: 354 LRHVATVLMATLRATDFTGRMGGEEFAACLPDTGLDEAGRIAERLRQAIAGTPVPFES-H 412

Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           SI +T+S GI++ R         + RAD ALY AK++GR+R V F+ +E
Sbjct: 413 SIALTVSIGISKMRLADAGGDDALSRADMALYSAKENGRDR-VAFATLE 460


>gi|162149402|ref|YP_001603863.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787979|emb|CAP57583.1| putative signalling protein, GGDEF family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 464

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 91/169 (53%), Gaps = 11/169 (6%)

Query: 103 LSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           L+R+D L+GL N  AF   +        G  +   +++  DID FK IND +GH  GD V
Sbjct: 294 LARVDHLTGLPNRRAFTEGMERAWQMLRGGVSRGGAVLMIDIDRFKTINDRYGHAAGDAV 353

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  L+       F GR+GGEEFAA    +   EA  +A  LR+ I  + +   S  
Sbjct: 354 LRHVATVLMATLRATDFTGRMGGEEFAACLPDTGLDEAGRIAERLRQAIAGTPVPFES-H 412

Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           SI +T+S GI++ R         + RAD ALY AK++GR+R V F+ +E
Sbjct: 413 SIALTVSIGISKMRLADAGGDDALSRADMALYSAKENGRDR-VAFATLE 460


>gi|159897665|ref|YP_001543912.1| diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890704|gb|ABX03784.1| diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 582

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 93/172 (54%), Gaps = 16/172 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+ ID L+GL N   F+    S  E+       L+I+ FDID+FKQIND  GH +GD
Sbjct: 414 LERLATIDSLTGLYNRRHFLGLAQSLLEQAWQAGNALAILLFDIDHFKQINDRHGHHIGD 473

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQ 207
           +++  ++            +GR GGEEF       S  EA ++A  LR  IE     ++Q
Sbjct: 474 QMLQLVATTAQAALRQSDLLGRYGGEEFVVMLTRVSNAEALLVAERLRSAIEQLILTDNQ 533

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++++  S+ +T+S   AE     P+  +I +AD ALY AK +GRN V  +S
Sbjct: 534 QSVTTSISVGLTLSYPHAEI----PLERLIQQADHALYQAKAAGRNNVQIYS 581


>gi|92113187|ref|YP_573115.1| diguanylate cyclase with PAS/PAC and GAF sensors [Chromohalobacter
           salexigens DSM 3043]
 gi|91796277|gb|ABE58416.1| diguanylate cyclase with PAS/PAC and GAF sensors [Chromohalobacter
           salexigens DSM 3043]
          Length = 570

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 95/179 (53%), Gaps = 10/179 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQI 142
           L ++    + ++ L+R D L+GL N +         + S    +  + +   DID+FK I
Sbjct: 392 LSQVKKERDEMAALARKDQLTGLPNRAYLNEYVDMLVKSPDVQHAGICLAVIDIDHFKTI 451

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM--FVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ND +GH +GD+VI +LS+++  V       F  R+GGEEF      SS + A  +   +R
Sbjct: 452 NDTYGHDIGDQVIIWLSERVTEVLRARAGDFAARVGGEEFVVMINNSSLEVARSVMERVR 511

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             IE++ I I     +HITIS+G+ +    +    +  RAD+ALY AK  GRN+ VC S
Sbjct: 512 SKIESTPIPIEEASPLHITISSGVTQWQPTDTYPHVFKRADEALYEAKHGGRNQ-VCVS 569


>gi|149189286|ref|ZP_01867572.1| diguanylate cyclase [Vibrio shilonii AK1]
 gi|148836845|gb|EDL53796.1| diguanylate cyclase [Vibrio shilonii AK1]
          Length = 608

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 96/175 (54%), Gaps = 12/175 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-----SIVFFDIDYFKQINDNF 146
           EL  +  R+   +  D L+GL N   F+S L    E L     + +  D+D+FKQ ND +
Sbjct: 427 ELIETNRRLHIAAETDELTGLPNRRPFMSELAHNTESLFVSTITTMMIDVDHFKQYNDTY 486

Query: 147 GHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           GH  GD  + +++  L  V  +P    V R+GGEEF A  + +S++E+ +LA  +R+ +E
Sbjct: 487 GHVQGDFALRYVAQALKQVL-SPCGHMVARIGGEEFCALLVNTSQEESVVLAQQMRQEVE 545

Query: 205 NSQINIS-SGPSIHITISAGIA-ERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
              I  S + P   +TIS G+A +     PI+   ++  AD+ALY AKK GRN V
Sbjct: 546 KLNITHSGNDPYDIVTISIGVAFQHLGDHPITPQNMLENADEALYAAKKRGRNHV 600


>gi|148553328|ref|YP_001260910.1| diguanylate cyclase [Sphingomonas wittichii RW1]
 gi|148498518|gb|ABQ66772.1| diguanylate cyclase [Sphingomonas wittichii RW1]
          Length = 378

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 92/179 (51%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
           GS +  L         ++  D L+GL N  AF       ++   +    LS+ F DID+F
Sbjct: 195 GSQMSSLQGELAEAQAVAESDPLTGLANRRAFQARLARAMAQAAAEGTPLSVAFCDIDHF 254

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K INDN GH  GD+++  +++ LV   G   FVGR GGEEF     G   + AA+  +++
Sbjct: 255 KSINDNHGHDTGDRILKMVAEALVEGVGEDAFVGRFGGEEFLILFDGIMARRAAMRVDEV 314

Query: 200 RKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R  +    +    +  P   +T SAG+A+    E    ++ RAD+ALY AK  GRNRV+
Sbjct: 315 RDELSGRHLVSKTTGEPLGTVTFSAGVAQLLVGEDDGAMLRRADEALYAAKNGGRNRVI 373


>gi|257865352|ref|ZP_05645005.1| GGDEF domain-containing protein [Enterococcus casseliflavus EC30]
 gi|257871682|ref|ZP_05651335.1| GGDEF domain-containing protein [Enterococcus casseliflavus EC10]
 gi|257799286|gb|EEV28338.1| GGDEF domain-containing protein [Enterococcus casseliflavus EC30]
 gi|257805846|gb|EEV34668.1| GGDEF domain-containing protein [Enterococcus casseliflavus EC10]
          Length = 350

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/213 (35%), Positives = 107/213 (50%), Gaps = 37/213 (17%)

Query: 76  ITISLLLG-YISGSILKE--LFISY------------------NRISQLSRIDCLSGLLN 114
           I IS L G Y++G I K   ++I Y                   RI  L +ID L+ L N
Sbjct: 145 IAISFLFGFYLTGDIQKTTLIYIVYGILAYTLAFFLYSIVNDMQRILALVKIDDLTQLNN 204

Query: 115 HSAFISS---LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT--- 168
              F      L +    LSI   DID+FK  ND +GH  GD ++     ++  +F T   
Sbjct: 205 FRKFQDDRQRLDTTEVDLSIALIDIDHFKNYNDRYGHRAGDVIL----QEIARIFSTYCT 260

Query: 169 ---PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
              P++  R+GGEEFA    G + Q AA L   ++K I   +I + +G S+ IT+S GIA
Sbjct: 261 ASNPVY--RIGGEEFAILIQGDA-QAAAYLLEKIQKRIRYQEIILDAGDSVSITLSIGIA 317

Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +R   E +     RADQALY AK+SGR+++  +
Sbjct: 318 QRQKGELLQQTQERADQALYRAKRSGRDQLCLY 350


>gi|242279563|ref|YP_002991692.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens
           DSM 2638]
 gi|242122457|gb|ACS80153.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens
           DSM 2638]
          Length = 838

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 96/173 (55%), Gaps = 10/173 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
           N++ +++  D ++ L N   FI  + S       Y+  LS+V FD+D FK +ND +GH V
Sbjct: 665 NQLRRMATTDDMTKLNNRRYFIELVKSEIERSIRYSRPLSLVMFDVDKFKAVNDTYGHDV 724

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  ++     V      +GRLGGEEFA     +  + A +LA  LR ++E + + +
Sbjct: 725 GDMVLKAIAATAKGVLRDVDIIGRLGGEEFAVGLPETDLKGAMLLAERLRVVLEEASVEL 784

Query: 211 SSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             G  +  T+S G+A  +R   + +  ++  AD ALY AK++GRNRV  ++ +
Sbjct: 785 PDGGIVDFTVSLGVAVLDRSITD-VDVLLKHADLALYAAKENGRNRVEAYTQM 836


>gi|330829572|ref|YP_004392524.1| PAS/PAC sensor-containing diguanylate cyclase [Aeromonas veronii
           B565]
 gi|328804708|gb|AEB49907.1| Diguanylate cyclase with PAS/PAC sensor [Aeromonas veronii B565]
          Length = 429

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 99/196 (50%), Gaps = 13/196 (6%)

Query: 75  SITISLLLGYISGSIL------KELFISYNRISQLSRIDCLSGLLNHSAFIS------SL 122
           S+ +  LLG  + +++       EL     ++ Q S  D L+GL N   F        SL
Sbjct: 231 SVKVPFLLGDGTPTLIGISSDITELHQLKEQLHQQSVRDGLTGLYNRRFFFEMCEKNLSL 290

Query: 123 GSYNEKLSIVF-FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +   S++   D+D FK IND FGHP+GD  +  L   +  V  +   + R+GG+EFA
Sbjct: 291 DMRHHLTSVLMVLDVDQFKCINDRFGHPLGDSALVHLGRVMQSVLRSEDVLARIGGDEFA 350

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                ++   AA LA  LR  +  S + +  G  + ITISAG+ E    E + ++  RAD
Sbjct: 351 ILLPNTTLSAAASLAERLRLQVMQSPLPLPDGDKLVITISAGLVENGEGELMESLYARAD 410

Query: 242 QALYVAKKSGRNRVVC 257
           Q LY AK+SGRN V C
Sbjct: 411 QMLYQAKQSGRNCVAC 426


>gi|209549403|ref|YP_002281320.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535159|gb|ACI55094.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 391

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 87/164 (53%), Gaps = 2/164 (1%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           ++++L+  D L+G+ N   F SSL  S     + V  DID+FK +ND FGH  GD V+  
Sbjct: 212 KLTRLANTDMLTGVPNRQHFFSSLPKSLGPGDAFVLIDIDFFKSVNDRFGHDRGDIVLVD 271

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           ++  +          GRLGGEEF+    G +E  A  LA  +R+ +    + +  G  + 
Sbjct: 272 VARTIARSIPPSSVFGRLGGEEFSLFVRGETEASAFALAEQIREAVNTLDL-VFEGKQVS 330

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            T+SAG+A          I  RADQALY AK +GRNRV  F+ I
Sbjct: 331 TTVSAGVALWEANLTEQDIQKRADQALYSAKNNGRNRVELFTGI 374


>gi|170743149|ref|YP_001771804.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium sp. 4-46]
 gi|168197423|gb|ACA19370.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium sp. 4-46]
          Length = 300

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 91/167 (54%), Gaps = 10/167 (5%)

Query: 102 QLSRIDCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +L+  D L+ LLN  AF      I+     + KL++V  DID FK+IND  GH +GD  I
Sbjct: 131 RLAETDSLTELLNRRAFVQRVAEIAGRAGNHGKLALVVADIDNFKRINDEHGHALGDVAI 190

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L  V  +   VGRLGGEEF  A  G S +EA  +AN LR      +     GP 
Sbjct: 191 QGVATALSEVPDS--LVGRLGGEEFGVALPGRSLEEAEAIANRLRLRCTQLRFKGRHGP- 247

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV-CFSDI 261
           + ++ S G++     E I  +  RAD ALY AK +GRNRVV  F+D+
Sbjct: 248 VQLSCSFGVSAWSEGETIEGLHKRADIALYEAKATGRNRVVSAFTDL 294


>gi|322714911|gb|EFZ06482.1| hypothetical protein SCA50_1997 [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 381

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 30/267 (11%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGL-------TPFYGLEYILVE---- 67
           + S+  + F++++ + F+  ++ ++ +  +   Y  L        P + L  +L      
Sbjct: 115 MWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLW-LTALLASVRLN 173

Query: 68  ---NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDCLSGLLN 114
              N+  +++ +T++ +L Y   I      E ++ Y        R+  ++  D L+G  N
Sbjct: 174 QYVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTAN 233

Query: 115 HSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM- 170
             +  S LG      E  +++  D+DYFK  ND++GH  GD  +A ++  +     TP  
Sbjct: 234 RRSMESFLGDALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVACVVKRSIRTPAD 293

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCH 229
            V R GGEEF      SS  EAA++A  ++  + E +  + +S  S  +T+S GI     
Sbjct: 294 LVARYGGEEFVVVLPSSSLNEAALVAQRIQTNLRETALPHAASAVSETVTVSMGITLSTA 353

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV 256
            + ++ II RAD+ALY AK+ GRNR V
Sbjct: 354 GDTVTGIIARADEALYRAKQQGRNRWV 380


>gi|313200646|ref|YP_004039304.1| diguanylate cyclase [Methylovorus sp. MP688]
 gi|312439962|gb|ADQ84068.1| diguanylate cyclase [Methylovorus sp. MP688]
          Length = 487

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 95/172 (55%), Gaps = 9/172 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I  ++  D L+ L N  AF       +     Y + L+++  DID+FKQIND  GH  G
Sbjct: 317 QIETMATTDSLTHLPNRKAFEIIIDVIMQERIRYGKDLAVILLDIDHFKQINDRHGHFAG 376

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++  +     +  FV R GGEEF       SE+ A +LA  +R+ +E   ++  
Sbjct: 377 DQVLTEVALIIRSCLRSVDFVCRWGGEEFLILLKDCSERNARLLAEKIRETLETRPVDHK 436

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + P IH+T S G+A   + E I  ++ RAD A+Y AK  GRN+V+ FS+ +N
Sbjct: 437 NVP-IHLTASLGVAMVQNGERIEQVLERADYAMYQAKALGRNQVI-FSNFKN 486


>gi|221067583|ref|ZP_03543688.1| diguanylate cyclase [Comamonas testosteroni KF-1]
 gi|220712606|gb|EED67974.1| diguanylate cyclase [Comamonas testosteroni KF-1]
          Length = 184

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 88/155 (56%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+G+LN +A I  +  Y  ++ LS++  DID+FK+IND+FGHP GDKVI  +   L  
Sbjct: 22  DTLTGVLNRAAVIELVNQYFVHDDLSLIVLDIDHFKRINDSFGHPTGDKVILGVVACLQA 81

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           V  +   +GR+GGEEF       S   +  LA DLR+ IE    ++  G    ++ S G+
Sbjct: 82  VVPSSAQIGRVGGEEFTVVLPRQSAHVSERLAQDLRRAIEICDFDLPDGSG--VSASFGV 139

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +         +    AD+ALYVAK+ GRN+ VC S
Sbjct: 140 SWAPAGGDFDSAYGFADEALYVAKRGGRNQ-VCLS 173


>gi|90424196|ref|YP_532566.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
 gi|90106210|gb|ABD88247.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
          Length = 410

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 9/157 (5%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+G+ N   F       I+        ++++ FDID+FK IND FGHP GD+++   
Sbjct: 220 IDPLTGMFNRRGFSEATTRMIAREADAGRPVTVMIFDIDFFKSINDRFGHPAGDELLKLF 279

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  +          GR+GGEEF AA L  S  EA + A  +R+  E   I +   P +  
Sbjct: 280 ATLVTNTLRISDLSGRIGGEEF-AALLPCSMDEALVAAERVREAFETCGIVVDDAP-VET 337

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T+S G+A    +  +  ++  AD ALY AK+ GRNRV
Sbjct: 338 TVSIGVAGGPPRTELEVLLAAADTALYQAKRGGRNRV 374


>gi|149921740|ref|ZP_01910187.1| diguanylate cyclase (GGDEF domain) [Plesiocystis pacifica SIR-1]
 gi|149817391|gb|EDM76864.1| diguanylate cyclase (GGDEF domain) [Plesiocystis pacifica SIR-1]
          Length = 752

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 90/178 (50%), Gaps = 19/178 (10%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHP 149
           Y  + + +  D L+GL NH AF   L   +       +K SI+  DID+FK +ND +GHP
Sbjct: 580 YQSMEERATTDGLTGLTNHRAFQERLEQLHALSERTGQKFSIILTDIDHFKSVNDTYGHP 639

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD V+  ++            V R GGEEF      +  + AA+ AN LR+ I    I 
Sbjct: 640 VGDAVLKRVAAIFTRRARKVDIVARYGGEEFVLVLPDTDAEGAAVFANRLREEIAAQTIT 699

Query: 210 ISSGPSIHITISAGIAE------RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +G S  +T+S G+AE      + H+     +I  ADQALY  K+ GRNRV    D+
Sbjct: 700 SDNG-SFSVTLSLGVAEFPRDSTKRHE-----LIELADQALYYCKEHGRNRVTKVCDL 751


>gi|17229908|ref|NP_486456.1| hypothetical protein all2416 [Nostoc sp. PCC 7120]
 gi|17131508|dbj|BAB74115.1| all2416 [Nostoc sp. PCC 7120]
          Length = 332

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 106/194 (54%), Gaps = 14/194 (7%)

Query: 77  TISLLLGYISGSILK-----ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
           T +L+LG  +  + K     +L    + +S ++  D L+ L N  A        I+   S
Sbjct: 124 THNLMLGQFTVGLRKAQKYRDLLQKNHILSAIALADSLTELNNRRALEWDLPRQITKARS 183

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
            N  LS+V  D+DYFK++ND +GH +GD+++  L  +L     +     R GGEEF    
Sbjct: 184 QNLPLSLVILDVDYFKKVNDQYGHLIGDRLLQSLCTRLRHNLRSQDTPFRYGGEEFVVIL 243

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQ 242
             ++ +EA I+A+ L +I+   Q +I+S   I +TIS G+A  E    E  +++++RADQ
Sbjct: 244 ANTTGEEAMIVADRLNRIVGEQQFSINSKLMISVTISLGVACLETDDDEQGNSLLHRADQ 303

Query: 243 ALYVAKKSGRNRVV 256
            L  AK SGRN+V+
Sbjct: 304 CLLAAKASGRNQVI 317


>gi|300214705|gb|ADJ79121.1| Response regulator [Lactobacillus salivarius CECT 5713]
          Length = 273

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 12/205 (5%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDC----LSGLLNHSAFISSLGSYNEK 128
           II +T+  LL +   ++            +++R D     L+ LLN+ +F S +   ++K
Sbjct: 60  IIDVTLGTLLMFAVANVYVNFLTKQYEELRMARYDVSHDGLTNLLNYDSFHSHMNELSQK 119

Query: 129 LS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV----FGTPMFVGRLGGEEF 180
            S    I   DID FK++ND +GH  G+ V+ + + +L V     FG    V R GGEEF
Sbjct: 120 SSKHQIICILDIDDFKKLNDTYGHLEGNDVLVYFTKRLFVEVKAHFGELASVYRFGGEEF 179

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
             +  G + ++   + + L + +       ++G  I +T S GIA  C K+ I T++  A
Sbjct: 180 CISVHGVTVEDCLEMTDKLAEELRTKDYVTATGDKITVTFSGGIALGCDKKDIRTVLREA 239

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D+ALY +K+  +  V C  D+E  +
Sbjct: 240 DKALYYSKRHKKGSVTCAKDLEKKS 264


>gi|126664512|ref|ZP_01735496.1| GGDEF family protein [Marinobacter sp. ELB17]
 gi|126630838|gb|EBA01452.1| GGDEF family protein [Marinobacter sp. ELB17]
          Length = 347

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 92/185 (49%), Gaps = 18/185 (9%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSI 131
           +L+  ++ G + +EL       ++L+  D L+G  N +    SL +       Y+   SI
Sbjct: 161 ALIFAWLVGRLQQEL-------TELATTDPLTGCRNRATLAESLTNQIQLCERYDRPSSI 213

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  D+D+FK IND +GH  GD V+  ++  L         + R+GGEEF      +S  E
Sbjct: 214 LLLDLDHFKAINDKWGHHTGDTVLTGIARLLSNRLRDNDHIFRIGGEEFMVLLPETSLPE 273

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A  LA +L K +         G    +TIS G+ + C  E  S  + RADQALY AK  G
Sbjct: 274 AETLARELVKSVAVEPFQTGIG----VTISGGLTQACANETWSVWLKRADQALYKAKSDG 329

Query: 252 RNRVV 256
           RNRVV
Sbjct: 330 RNRVV 334


>gi|257874944|ref|ZP_05654597.1| GGDEF domain-containing protein [Enterococcus casseliflavus EC20]
 gi|257809110|gb|EEV37930.1| GGDEF domain-containing protein [Enterococcus casseliflavus EC20]
          Length = 350

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/213 (34%), Positives = 104/213 (48%), Gaps = 37/213 (17%)

Query: 76  ITISLLLG-YISGSILKELFI--------------------SYNRISQLSRIDCLSGLLN 114
           I IS L G Y++G I K   I                       RI  L +ID L+ L N
Sbjct: 145 IVISFLFGFYLTGDIQKTTLIYIIYGILAYTLAFFLYSIVNDMQRILALVKIDDLTQLNN 204

Query: 115 HSAFISS---LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT--- 168
              F      L +    LSI   DID+FK  ND +GH  GD ++     ++  +F T   
Sbjct: 205 FRKFQDDRQRLDTTEVDLSIALIDIDHFKNYNDRYGHRAGDVIL----QEIARIFSTYCT 260

Query: 169 ---PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
              P++  R+GGEEFA    G + Q AA L   ++K I   +I + +G S+ IT+S GIA
Sbjct: 261 ASNPVY--RIGGEEFAILIQGDA-QAAAYLLEKIQKRIRYQEIILDAGDSVSITLSIGIA 317

Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +R   E +     RADQALY AK+SGR+++  +
Sbjct: 318 QRQKGELLQQTQERADQALYRAKRSGRDQLCLY 350


>gi|149186979|ref|ZP_01865287.1| putative diguanylate cyclase (GGDEF) [Erythrobacter sp. SD-21]
 gi|148829368|gb|EDL47811.1| putative diguanylate cyclase (GGDEF) [Erythrobacter sp. SD-21]
          Length = 408

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 102/210 (48%), Gaps = 19/210 (9%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y  V NLSL I ++  +++L  +   +  ++      + + + +D L+GL    AF   +
Sbjct: 184 YYSVLNLSLSIAALMCAMVL--VGACVYDQI----KSVKERAEMDLLTGLRTRRAFEQDV 237

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            +  EK       +S+V  DID+FK +ND +GH VGDK IA     +          GR+
Sbjct: 238 IAQVEKAKLEGVPVSLVVADIDHFKAVNDVWGHQVGDKAIAAFGQVVTDTIRDTDIAGRI 297

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPIS 234
           GGEEF   A     + A  +A  +RK    +Q+     P  H +T S G+A R   E   
Sbjct: 298 GGEEFCVLAWNCDGEAAISMAERIRKCFAETQVE--GMPEDHRLTASFGVAGRNEGEGYG 355

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            +  RAD ALY AK+ GRNR V    IEN 
Sbjct: 356 KVFARADAALYTAKEEGRNRTV---RIENK 382


>gi|90423659|ref|YP_532029.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
 gi|90105673|gb|ABD87710.1| diguanylate cyclase (GGDEF domain) [Rhodopseudomonas palustris
           BisB18]
          Length = 470

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 94/181 (51%), Gaps = 10/181 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVF 133
           LL   +  + +++        +L+  D L+G+ N    I  L            +LS+++
Sbjct: 277 LLSEANSRVEQQVEERTREFQRLAHADPLTGIANRRLLIERLDGEVARAAKAGGELSVLY 336

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK INDNFGH  GD+V+  L+  +  +      VGR+GGEEF    L + +  A 
Sbjct: 337 VDIDHFKSINDNFGHAAGDRVLVQLAATMKSLLRQTDLVGRMGGEEFVVLLLNTDQAAAL 396

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +A+ LR+ I   +  + + P   +TIS G+A     E  ++++ RAD AL  AK+ GRN
Sbjct: 397 RVADQLREAISRCEFELITRP---VTISVGVAGYEAAEDAASLLARADHALLQAKRCGRN 453

Query: 254 R 254
           +
Sbjct: 454 Q 454


>gi|157374862|ref|YP_001473462.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157317236|gb|ABV36334.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 420

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 93/170 (54%), Gaps = 17/170 (10%)

Query: 106 IDCLSGLLNHSAFISSLGSYNE----------KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +D L+G+ N   F S    Y E           L++   DID FK +ND +GH VGD+V+
Sbjct: 255 LDYLTGVYNRRYFFSQ---YEELIILKKQKRGALTLALLDIDLFKGVNDTYGHDVGDEVL 311

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              + +L   FG    V R GGEEF  A  G +E ++  L +  R  +E+  I+ S G  
Sbjct: 312 VEFAARLKRSFGQHFTVSRFGGEEFIVAFRGLNEVKSFALMDKFRSQLESKPISTSRG-E 370

Query: 216 IHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           + +T+SAGIA   +   +E + T+I RAD+ALY AK++GRN V   SD E
Sbjct: 371 LSVTVSAGIASLSDDESEESLDTLIQRADKALYDAKEAGRNLVCIESDHE 420


>gi|94496229|ref|ZP_01302807.1| sensory box/GGDEF domain protein [Sphingomonas sp. SKA58]
 gi|94424408|gb|EAT09431.1| sensory box/GGDEF domain protein [Sphingomonas sp. SKA58]
          Length = 600

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 94/160 (58%), Gaps = 13/160 (8%)

Query: 103 LSRIDCLSGLLNH--SAFI--SSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +++ D L+G+ N   + F+   ++G+  +    +SI  FDID+FK+IND++GH  GD+VI
Sbjct: 443 MAQTDQLTGIANRRRTEFVLDQAIGAAEQSGKSVSIAIFDIDHFKRINDSYGHHTGDEVI 502

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++        +   VGR GGEEF      ++++ A  +   +R+ IE +    +SGP 
Sbjct: 503 KRVAQDAAAQLRSGDLVGRYGGEEFVIVLPDATQETALRVGERIRETIEAA----NSGPP 558

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +TIS G+AE    E    ++ RAD+ALY AK++GRNR+
Sbjct: 559 --VTISIGVAELAQGETADALLRRADRALYSAKRAGRNRL 596


>gi|163843324|ref|YP_001627728.1| diguanylate cyclase [Brucella suis ATCC 23445]
 gi|163674047|gb|ABY38158.1| diguanylate cyclase (GGDEF) domain [Brucella suis ATCC 23445]
          Length = 264

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 114/226 (50%), Gaps = 18/226 (7%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG---------YISGSILKELFI-- 95
           ++ LF +G T      +   E   L+ IS+++  LL          ++    LKE +   
Sbjct: 14  SVVLFCVGATSITA--FWSGETPGLMAISLSLGFLLVMIFPFSAFIFLRYDKLKEAYAQL 71

Query: 96  --SYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPV 150
             S+  +   +RID ++G LN  A   ++    S  E  +++  D D+FK IND+FGH V
Sbjct: 72  EKSHVELQARARIDHMTGPLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGHGV 131

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+  + 
Sbjct: 132 GDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPFHT 191

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV
Sbjct: 192 TEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 237


>gi|329850534|ref|ZP_08265379.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
 gi|328840849|gb|EGF90420.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
          Length = 352

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 102/200 (51%), Gaps = 19/200 (9%)

Query: 79  SLLLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLS 130
           S+L G +S S  +   L    +++   +  D L+ L N  +F  SL ++       + L+
Sbjct: 153 SVLEGRLSESSREVTRLRKHLDQVRMEAMTDALTNLANRKSFDESLDAHCDTDDVTKPLT 212

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +   DID+FK+ ND +GH  GD+V+ +++  L  +   P    R GGEEF     G +  
Sbjct: 213 LAVIDIDHFKRFNDTWGHQTGDQVLRYVASVLARIGRPPRMAARYGGEEFGLLFPGETSG 272

Query: 191 EAAILANDLR-----KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
               L N+ R     ++++    N   G    +TISAGIA+R H E    ++ RAD+ALY
Sbjct: 273 TVERLLNEARTEIASRVLKRRSTNEDLGT---VTISAGIAQRTHAEDAFDLLDRADKALY 329

Query: 246 VAKKSGRNRVVCFSDIENNT 265
           ++K +GRN+V      EN T
Sbjct: 330 LSKNNGRNKVTV---AENET 346


>gi|83592608|ref|YP_426360.1| diguanylate cyclase [Rhodospirillum rubrum ATCC 11170]
 gi|83575522|gb|ABC22073.1| Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           domain [Rhodospirillum rubrum ATCC 11170]
          Length = 632

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 94/174 (54%), Gaps = 12/174 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+ ID L+G+LN  +F       +S    +  +LS++  D D+FK +ND +GH  GD
Sbjct: 457 LRRLANIDGLTGVLNRRSFTEESELLLSLANRHGRRLSMMIVDADHFKGVNDTYGHDAGD 516

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  L+ ++  V      +GR+GGEEFA     + ++ A  LA  +   I   ++ +  
Sbjct: 517 RVLKALTGEIAGVLRKTDLLGRIGGEEFAILLPETDQEGAEGLAWRVVLAIRALEVPLPE 576

Query: 213 GPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFSDIEN 263
           G  + +T+S G++  C     +T   ++  AD ALY AK  GR+RV CF   ++
Sbjct: 577 GGVLKVTVSVGVS--CRNTEAATFDWMLKEADTALYAAKHGGRDRVACFGQTQS 628


>gi|209885133|ref|YP_002288990.1| diguanylate cyclase [Oligotropha carboxidovorans OM5]
 gi|209873329|gb|ACI93125.1| diguanylate cyclase [Oligotropha carboxidovorans OM5]
          Length = 355

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 103/200 (51%), Gaps = 11/200 (5%)

Query: 74  ISITISLLLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------- 124
           +S+T   L   ++ S L+   L  S   I   S  D L+ L N   F  +L S       
Sbjct: 146 MSLTNKALEARLATSRLEIASLQDSLEAIRTESLTDPLTSLGNRKYFDRALESAVEHASH 205

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           ++E LS++  DID+FK  NDN+GH  GD+V+  ++  L           R GGEEF    
Sbjct: 206 HDEPLSLLMVDIDHFKSFNDNYGHLTGDQVLRLVALALKANIKGQDLTARYGGEEFVVIL 265

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQ 242
             +S ++A  +A+++R+ + + Q+   S   I   +TISAG++     +    +I RAD 
Sbjct: 266 PNTSMRQALAVADNIRRAVMSKQLKKKSTGEILGRVTISAGVSTFRPGDDAPALIDRADA 325

Query: 243 ALYVAKKSGRNRVVCFSDIE 262
            LY AK+ GRNRV+C +D E
Sbjct: 326 CLYAAKRHGRNRVICEADPE 345


>gi|62180438|ref|YP_216855.1| hypothetical protein SC1868 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224583636|ref|YP_002637434.1| hypothetical protein SPC_1855 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|62128071|gb|AAX65774.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224468163|gb|ACN45993.1| hypothetical protein SPC_1855 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 376

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 30/267 (11%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGL-------TPFYGLEYILVE---- 67
           + S+  + F++++ + F+  ++ ++ +  +   Y  L        P + L  +L      
Sbjct: 110 MWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLW-LTALLASVRLN 168

Query: 68  ---NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDCLSGLLN 114
              N+  +++ +T++ +L Y   I      E ++ Y        R+  ++  D L+G  N
Sbjct: 169 QYVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTAN 228

Query: 115 HSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM- 170
             +  S LG      E  +++  D+DYFK  ND++GH  GD  +A ++  +     TP  
Sbjct: 229 RRSMESFLGDALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVACVVKRSIRTPAD 288

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCH 229
            V R GGEEF      SS  EAA++A  ++  + E +  + +S  S  +T+S GI     
Sbjct: 289 LVARYGGEEFVVVLPSSSLNEAALVAQRIQTNLRETALPHAASAVSETVTVSMGITLSTA 348

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV 256
            + ++ II RAD+ALY AK+ GRNR V
Sbjct: 349 GDTVTGIIARADEALYRAKQQGRNRWV 375


>gi|315644895|ref|ZP_07898024.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Paenibacillus vortex V453]
 gi|315279837|gb|EFU43138.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Paenibacillus vortex V453]
          Length = 544

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/257 (33%), Positives = 118/257 (45%), Gaps = 36/257 (14%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIAN-IFLFYIGLTPFYGLEYILVENLSLVIISIT 77
           L+SF   T ++Y S      + +V+ + N +F    GLT F GL                
Sbjct: 108 LKSFIKDTLLVYLSTLILSMVLSVLIVHNGVF----GLTLFIGL---------------- 147

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLS 130
            S++L Y      K+LF  YN + + +  D  +GL NHS F       I    + +  LS
Sbjct: 148 -SIMLSYS----FKQLFSMYNEVQEKAIKDQRTGLYNHSYFENLLEDEIKKAKANDTPLS 202

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSE 189
           +   DID FK+ ND FGH  GD ++ FL + L V       V  R GGEEF     G  E
Sbjct: 203 LAMIDIDDFKKYNDQFGHLKGDMLLGFLGNYLKVESEVAEVVASRFGGEEFTILMPGYDE 262

Query: 190 QEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247
            +A    N LRK + ++    +   PS  ++ SAGIA  R      S ++  ADQALY A
Sbjct: 263 NKARSFINRLRKKLNDTYFEGVEIFPSGCLSYSAGIATYRIDIHDKSQLVELADQALYYA 322

Query: 248 KKSGRNRVVCFSDIENN 264
           KK G+N V  +    N 
Sbjct: 323 KKQGKNNVHVYGSGANK 339


>gi|28899662|ref|NP_799267.1| putative sensory box/GGDEF family protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|28807914|dbj|BAC61151.1| putative sensory box/GGDEF family protein [Vibrio parahaemolyticus
           RIMD 2210633]
          Length = 396

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 93/166 (56%), Gaps = 9/166 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ QLS  D L+GLLN  AFIS+L +        ++ LS +  DID+FK IND+ GH  G
Sbjct: 209 RLKQLSETDALTGLLNRRAFISNLDNAIIQHTKRSQTLSCLMIDIDHFKDINDSVGHFSG 268

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D VI  ++     V     F+GRLGGEEFA     ++  +A  +A  +R+ I+ +  ++ 
Sbjct: 269 DHVITRIAHVCQGVIRGSDFIGRLGGEEFAVILTDTNAIQAYEVAERIRQAIQATICHVD 328

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               I  T+S G+AE    +     ++  AD+A+Y +K SGRN+V 
Sbjct: 329 D-VEITTTVSIGVAELNSQQSNAKELLIEADKAMYYSKHSGRNQVT 373


>gi|332306985|ref|YP_004434836.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174314|gb|AEE23568.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 370

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 86/163 (52%), Gaps = 8/163 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
            +  Q +RID LSGL N    +  L         +++ ++++  DID+FKQ+ND +GH V
Sbjct: 203 KKFEQQARIDSLSGLQNRRGMLEKLEYEHQRTLRHSKNMTLMMCDIDHFKQVNDKYGHDV 262

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VI  +             V R GGEEF      +S+Q+A +LA  LRK IE+ +  +
Sbjct: 263 GDIVIKQVGQMFANGLRKQDTVARWGGEEFLFMLPETSQQQAFVLAEKLRKKIESYEQKV 322

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            S   + +T+S GI +   ++ +   I RAD  LY AK  GRN
Sbjct: 323 DS-THLSVTVSIGIYQMHPQDRLDHAISRADTNLYRAKTHGRN 364


>gi|218891041|ref|YP_002439907.1| hypothetical protein PLES_23041 [Pseudomonas aeruginosa LESB58]
 gi|218771266|emb|CAW27031.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
          Length = 341

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 103/203 (50%), Gaps = 15/203 (7%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKE----LFISYNRISQLSRIDCLSGLLNHSAF-- 118
           L E   L  +SI   L  GY+    L E    L    +R  + S +D L+ L N + F  
Sbjct: 141 LREGRQLNRLSI---LAEGYLQLRSLTEHTRFLRQEIDREQRKSLLDPLTQLWNRAGFHA 197

Query: 119 -----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                +    + ++++ I++ DID+FK+IND  GH  GD V+   + +L         + 
Sbjct: 198 LHQHELELARASDQRIGIIYSDIDHFKRINDTLGHRAGDSVLREAASRLRAALRPEDLLA 257

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEF A        E  ++AN +R+++E + I+  +G S+ +TISAG       E  
Sbjct: 258 RFGGEEFVAMVQVRETTELTMIANRIRELMEATPIDC-AGTSVPVTISAGCTLAGSGEEP 316

Query: 234 STIIYRADQALYVAKKSGRNRVV 256
              + RAD ALY AK++GRNRVV
Sbjct: 317 EQALARADAALYDAKRAGRNRVV 339


>gi|167589310|ref|ZP_02381698.1| diguanylate cyclase [Burkholderia ubonensis Bu]
          Length = 506

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 91/177 (51%), Gaps = 12/177 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPVG 151
           ++ L+R D L+GL N  A   +L    E+L        S++F D D+FKQ ND +GH  G
Sbjct: 328 LTDLTRTDPLTGLSNRRALDVALADEWERLQRGNDASLSVLFIDADHFKQYNDRYGHAQG 387

Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209
           D  + FL++ +            R GGEEF A    + E  AA +A  +R+ +EN+++  
Sbjct: 388 DAALRFLAECIRAHTRRRGDIAARYGGEEFVAVLPDTDESGAAKVAEAIRREVENNRLAG 447

Query: 210 -ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
              + P+  ++I    A   H   I  +  +AD ALY AK+ GRNR VC +  E +T
Sbjct: 448 LAEAVPAFTVSIGCATARSAHPPSIDALSRQADLALYTAKRQGRNR-VCHAPAEQHT 503


>gi|144898776|emb|CAM75640.1| GGDEF domain protein [Magnetospirillum gryphiswaldense MSR-1]
          Length = 494

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 85/167 (50%), Gaps = 9/167 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+G+ N    I +          Y   LS++  DID+FK IND +GHP GD
Sbjct: 326 MRKLATTDTLTGIANRRQLIETGEHEVARAHRYGHALSVLILDIDHFKAINDTWGHPAGD 385

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-NSQINIS 211
           + I  ++  +  +       GRLGGEEFA     +    AAI+A  LR+ IE  +     
Sbjct: 386 RAIQNVAKAMAGLVRDQDTAGRLGGEEFAIILPETDAAGAAIMAERLRQGIETTTTTQAD 445

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            G  I  T+S G A     +    +++ RAD+ LY AK SGRNRV+ 
Sbjct: 446 DGTVIRFTVSIGTASLNAQEASFDSLLSRADKGLYQAKGSGRNRVMA 492


>gi|149195064|ref|ZP_01872156.1| diguanylate cyclase (GGDEF domain) [Caminibacter mediatlanticus
           TB-2]
 gi|149134777|gb|EDM23261.1| diguanylate cyclase (GGDEF domain) [Caminibacter mediatlanticus
           TB-2]
          Length = 750

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 84/177 (47%), Gaps = 25/177 (14%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS--------------------YNEKLSIVFFDIDYFKQ 141
           QLS+I  LS  L   AF   L +                    Y   LS++F DIDYFK+
Sbjct: 579 QLSKIKKLSKQLETMAFYDKLTNIYNRAKFKNILKEFIEYSKRYKTPLSLIFLDIDYFKK 638

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           INDNFGH  GD V+  +     +        GR GGEEF      +    A I+A  +R 
Sbjct: 639 INDNFGHEKGDLVLKEMVKVAKLSLRESDVFGRWGGEEFLILLPNTDINGAKIVAEKIRD 698

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            IE+   +      I +T+S G+ +    + I + + RAD ALY AKK GRNRVV F
Sbjct: 699 AIESHDFD-----GIKVTVSLGVTQLKEDDTIESFVNRADIALYQAKKEGRNRVVVF 750


>gi|83593926|ref|YP_427678.1| diguanylate cyclase [Rhodospirillum rubrum ATCC 11170]
 gi|83576840|gb|ABC23391.1| Putative diguanylate cyclase (GGDEF domain) [Rhodospirillum rubrum
           ATCC 11170]
          Length = 582

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 94/170 (55%), Gaps = 8/170 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R  + +R+D L+G+LN  +F       ++    +   L+++  DIDYFK +ND +GH VG
Sbjct: 407 RAEREARVDYLTGVLNRRSFFELAEGELARSIRFGRPLAVLMIDIDYFKAVNDTWGHGVG 466

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++  +          GR GGEEF A  + +S  EA  +A  L  ++   +I   
Sbjct: 467 DEVLQNVAGLIGQTLRGADIFGRTGGEEFTAVIVEASGSEALEVAQRLCAVVAQGKIVGP 526

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSD 260
            G +I +T+S G++    ++    I+ R ADQA+Y AK++GRNRVV   D
Sbjct: 527 GGEAIGVTLSIGVSLLRGRDMAFEILSREADQAMYGAKRAGRNRVVVHRD 576


>gi|239993892|ref|ZP_04714416.1| hypothetical protein AmacA2_05343 [Alteromonas macleodii ATCC
           27126]
          Length = 192

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 91/165 (55%), Gaps = 9/165 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ + +  D LSGLLN  AF       I++   Y   LS+V  DID+FK+IND  GH +G
Sbjct: 26  KLQRDANFDYLSGLLNRRAFQIVSQQAIAASHRYKRSLSVVMIDIDFFKRINDTHGHDMG 85

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DK I  ++  L +       V R+GGEEF      +    A  LA  LR  I  + +++ 
Sbjct: 86  DKAIKHVAKILKMSSRNADCVARIGGEEFVLLLPDTDRAGAFKLAEKLRDRISKNPLDV- 144

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +G  I IT+SAG++  + H + I + +  AD ALY AK+SGRN V
Sbjct: 145 NGKFIDITVSAGVSYVKEHHDTIESALSEADDALYKAKESGRNNV 189


>gi|242280298|ref|YP_002992427.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
 gi|242123192|gb|ACS80888.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
          Length = 377

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 100/192 (52%), Gaps = 7/192 (3%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRI--DCLSGLLNHSAFISSLGSYNEK- 128
            II+   ++LLG ISG +   ++++ NR   +  +  D L+G  N  A   +L   N   
Sbjct: 185 TIIATLGAILLGMISG-VFGSIWLARNRKQMIEFVTRDALTGAYNRRALDDALHQLNGDK 243

Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
              + +  D+D FK +ND +GH  GD V+ +  ++   V  +    GR GGEEF      
Sbjct: 244 GSFAALLLDLDNFKSVNDTYGHDAGDLVLKYFVEETQKVLRSNDLFGRYGGEEFLILLYD 303

Query: 187 SSEQEAAILANDLRKIIENSQINI-SSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
           +  + AA LA  +RK +E++ + + SSG    +T+S G A      P    +  AD+A+Y
Sbjct: 304 TKLEHAAALAERIRKSVESNTVYLPSSGAHHSLTVSIGCAASDGSRPSEETVRMADKAMY 363

Query: 246 VAKKSGRNRVVC 257
            AK+SGRN+VV 
Sbjct: 364 KAKQSGRNQVVV 375


>gi|262171617|ref|ZP_06039295.1| GGDEF family protein [Vibrio mimicus MB-451]
 gi|261892693|gb|EEY38679.1| GGDEF family protein [Vibrio mimicus MB-451]
          Length = 889

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 64/174 (36%), Positives = 93/174 (53%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L     +  +LS+ D L+GL N  AF        S +    +++SI   DID+FKQIN
Sbjct: 707 QKLRFQAEKFERLSKEDELTGLANRRAFDVYLKQAFSRVDHPGQQVSIGLLDIDHFKQIN 766

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D + H +GD+ I  +S QL+        V R GGEEF    +G   +EA     +LR  I
Sbjct: 767 DRYSHIIGDQAIVAVSQQLLKYVRDKTRVARWGGEEFTILYVGDP-KEAWSYFEELRCTI 825

Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E  Q++ S+  P + +T+S G A+    E   +++  AD AL  AKK GRNRVV
Sbjct: 826 E--QVDFSTVAPGLTVTVSVGFADSQQAESYESVLKLADHALLTAKKLGRNRVV 877


>gi|258627565|ref|ZP_05722342.1| GGDEF family protein [Vibrio mimicus VM603]
 gi|258580147|gb|EEW05119.1| GGDEF family protein [Vibrio mimicus VM603]
          Length = 978

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 64/174 (36%), Positives = 93/174 (53%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L     +  +LS+ D L+GL N  AF        S +    +++SI   DID+FKQIN
Sbjct: 796 QKLRFQAEKFERLSKEDELTGLANRRAFDVYLKQAFSRVDHPGQQVSIGLLDIDHFKQIN 855

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D + H +GD+ I  +S QL+        V R GGEEF    +G   +EA     +LR  I
Sbjct: 856 DRYSHIIGDQAIVAVSQQLLKYVRDKTRVARWGGEEFTILYVGDP-KEAWSYFEELRCTI 914

Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E  Q++ S+  P + +T+S G A+    E   +++  AD AL  AKK GRNRVV
Sbjct: 915 E--QVDFSTVAPGLTVTVSVGFADSQQAESYESVLKLADHALLTAKKLGRNRVV 966


>gi|90961999|ref|YP_535915.1| response regulator [Lactobacillus salivarius UCC118]
 gi|90821193|gb|ABD99832.1| Response regulator [Lactobacillus salivarius UCC118]
          Length = 391

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 12/205 (5%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDC----LSGLLNHSAFISSLGSYNEK 128
           II +T+  LL +   ++            +++R D     L+ LLN+ +F S +   ++K
Sbjct: 178 IIDVTLGTLLMFAVANVYVNFLTKQYEELRMARYDVSHDGLTNLLNYDSFHSHMNELSQK 237

Query: 129 LS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV----FGTPMFVGRLGGEEF 180
            S    I   DID FK+ ND +GH  G+ V+ + + +L       FG    V R GGEEF
Sbjct: 238 SSRHQIICILDIDDFKKFNDTYGHLEGNDVLVYFTKRLFAEVKAHFGKLASVYRFGGEEF 297

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
             +  G + ++   + + L + +       ++G  I +T S GIA  C K+ I T++  A
Sbjct: 298 CVSVHGVTVEDCLEMTDKLAEELRTKDYVTATGDKITVTFSGGIALGCDKKDIKTVLREA 357

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D+ALY +K+  +  V C  D+E  +
Sbjct: 358 DKALYYSKRHKKGSVTCAKDLEKKS 382


>gi|56413215|ref|YP_150290.1| hypothetical protein SPA1005 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197362140|ref|YP_002141777.1| hypothetical protein SSPA0937 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56127472|gb|AAV76978.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093617|emb|CAR59086.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 376

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 30/267 (11%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGL-------TPFYGLEYILVE---- 67
           + S+  + F++++ + F+  ++ ++ +  +   Y  L        P + L  +L      
Sbjct: 110 MWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLW-LTALLASVQLN 168

Query: 68  ---NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDCLSGLLN 114
              N+  +++ +T++ +L Y   I      E ++ Y        R+  ++  D L+G  N
Sbjct: 169 QYMNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTAN 228

Query: 115 HSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM- 170
             +  S LG      E  +++  D+DYFK  ND++GH  GD  +A ++  +     TP  
Sbjct: 229 RRSMESFLGGALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVACVVKRSIRTPAD 288

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCH 229
            V R GGEEF      SS  EAA++A  ++  + E +  + +S  S  +T+S GI     
Sbjct: 289 LVARYGGEEFVVVLPSSSLNEAALVAQRIQTNLRETALPHAASAVSETVTVSMGITLSTA 348

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV 256
            + ++ II RAD+ALY AK+ GRNR V
Sbjct: 349 GDTVTGIIARADEALYRAKQQGRNRWV 375


>gi|86750684|ref|YP_487180.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
 gi|86573712|gb|ABD08269.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
          Length = 261

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 112/211 (53%), Gaps = 19/211 (9%)

Query: 66  VENLSLVI---ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---- 118
           V++ SL++   +S  +S  L Y S  ++++L ++   ++++SR D L+GLLN   F    
Sbjct: 51  VQHASLIVAVGVSTVLSGALSYRSAILMRQLTLTRAELARISRTDPLTGLLNRRGFDDAA 110

Query: 119 ---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA----FLSDQLVVVFGTPMF 171
              ++   +  +++  +  DID FK IND +GH  GD+V+A     LSD           
Sbjct: 111 APLLAQAAAAGQRVVALMCDIDRFKTINDRYGHDAGDRVLARIGTILSD---FAEANGAV 167

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
           + R GGEEFA   +G S++EA   A  L K+         +  ++ +T+S G+A      
Sbjct: 168 IARHGGEEFAGLMVGVSDEEATRYAQALCKLCSTDVAG--NDVAVPVTMSFGLATHLPGG 225

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            ++ ++ RADQALY AK  GRN VV   ++E
Sbjct: 226 DLAALMRRADQALYRAKDLGRNCVVQIDELE 256


>gi|119469554|ref|ZP_01612458.1| hypothetical protein ATW7_06843 [Alteromonadales bacterium TW-7]
 gi|119447089|gb|EAW28359.1| hypothetical protein ATW7_06843 [Alteromonadales bacterium TW-7]
          Length = 323

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 94/184 (51%), Gaps = 13/184 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQIN 143
           KEL     R+ Q+S+ D L+ L N   + S+L     +        +++ FDID FK +N
Sbjct: 142 KELEDLNARLEQVSQTDSLTQLYNRGHWESTLKQEFLRTKRNGGSSALLMFDIDRFKVVN 201

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD+ +  LS  L          GR GGEEF    L + E+ A I A  LR +I
Sbjct: 202 DEYGHTCGDEALRHLSKLLKTTLRETDIAGRYGGEEFVVTLLDTDEKGAEIFAERLRVLI 261

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFSD 260
           E S + +     + +T+S G A  C           I  AD+A+Y +KK+GRN+V  ++D
Sbjct: 262 EQSPV-MYKQLEVKVTVSIGFA--CFSNEFKDHERWIEAADKAMYQSKKNGRNKVTAYAD 318

Query: 261 IENN 264
           I+N+
Sbjct: 319 IKND 322


>gi|119946701|ref|YP_944381.1| diguanylate cyclase [Psychromonas ingrahamii 37]
 gi|119865305|gb|ABM04782.1| diguanylate cyclase [Psychromonas ingrahamii 37]
          Length = 409

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 106/204 (51%), Gaps = 12/204 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +++  ++ L ++   ISL L     S+L +L+       + S +D L+ L+N        
Sbjct: 210 WVIFNDIWLFLLFAGISLWLQVGQLSMLMKLY-------RESTVDPLTKLINRRVLFRLA 262

Query: 123 GSYNEKLS---IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
            +  EK S   ++ FD+D FK+IND +GH VGDKV+  ++  +         V R GGEE
Sbjct: 263 ANDLEKQSNFCLIMFDLDRFKRINDTYGHGVGDKVLVSIAQVIQRELRQSDIVARFGGEE 322

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F A       ++A  +   +R++I    + ++ G  I  T S G+ ++   E +   + R
Sbjct: 323 FVAILPEIGLEQATRIGQRIRRMISQESVQLTDGLVIKTTSSIGVTQKRVNESLDETLKR 382

Query: 240 ADQALYVAKKSGRNRVVCFSDIEN 263
           AD  LY AK++GRN+VV  SDI+N
Sbjct: 383 ADDFLYYAKENGRNQVV--SDIDN 404


>gi|254235755|ref|ZP_04929078.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126167686|gb|EAZ53197.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 341

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 103/203 (50%), Gaps = 15/203 (7%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKE----LFISYNRISQLSRIDCLSGLLNHSAF-- 118
           L E   L  +SI   L  GY+    L E    L    +R  + S +D L+ L N + F  
Sbjct: 141 LREGRQLNRLSI---LAEGYLQLRSLTEHTRFLRQEIDREQRKSLLDPLTQLWNRAGFHA 197

Query: 119 -----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                +    + ++++ I++ DID+FK+IND  GH  GD V+   + +L         + 
Sbjct: 198 LHQHELELARASDQRIGIIYSDIDHFKRINDTLGHRAGDSVLREAASRLRAALRPEDLLA 257

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEF A        E  ++AN +R+++E + I+  +G S+ +TISAG       E  
Sbjct: 258 RFGGEEFVAMVQVRETTELTMIANRIRELMEATPIDC-AGTSVPVTISAGCTLAGSGEEP 316

Query: 234 STIIYRADQALYVAKKSGRNRVV 256
              + RAD ALY AK++GRNRVV
Sbjct: 317 EQALARADAALYDAKRAGRNRVV 339


>gi|170695111|ref|ZP_02886259.1| diguanylate cyclase [Burkholderia graminis C4D1M]
 gi|170139963|gb|EDT08143.1| diguanylate cyclase [Burkholderia graminis C4D1M]
          Length = 397

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 106/194 (54%), Gaps = 13/194 (6%)

Query: 72  VIISITISLLLGYISGSILKELFIS--YNRISQLSRIDCLSGLLNHSAF-------ISSL 122
           V++ ++++L+ G + G +L    +S   +R++    +D L+  LN  AF       ++  
Sbjct: 192 VLLQLSLALM-GAVLGLVLLAAAMSDVIDRLTLERDLDSLTETLNRRAFERLAGRRVADR 250

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
            SY   L+++ FDID FK IND +GH  GD V+   +  L         V R+GGEEF  
Sbjct: 251 RSY--PLTLIAFDIDNFKSINDRYGHAAGDAVLRQFAAILRAAVREKDVVARIGGEEFVL 308

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
              G+ ++ A  +   LR ++E+S+ +     ++ +T SAGIA     E +  ++ RADQ
Sbjct: 309 LLPGADDKFAYEIVERLRTVLESSRFD-EIEATLRVTTSAGIARYRPGEDVGALLARADQ 367

Query: 243 ALYVAKKSGRNRVV 256
            LY AK++GRNRVV
Sbjct: 368 LLYAAKRAGRNRVV 381


>gi|87310815|ref|ZP_01092942.1| probable response regulatory protein [Blastopirellula marina DSM
           3645]
 gi|87286572|gb|EAQ78479.1| probable response regulatory protein [Blastopirellula marina DSM
           3645]
          Length = 312

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 87/161 (54%), Gaps = 16/161 (9%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N  AF       I     ++    +  FDID+FK+IND +GH VGDK +  LS
Sbjct: 140 DALTGIGNRRAFEREMDRRIHEYQRHDVPFCLTIFDIDHFKKINDQWGHDVGDKTLRVLS 199

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-- 217
           + L         V RLGGEEFA   + +   EA  +++  R     ++I    G  IH  
Sbjct: 200 ESLYNEVRATDMVTRLGGEEFAVIFVATQLAEALKVSHRAR-----AKIGERCGARIHDD 254

Query: 218 --ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +TIS G+AE    + + T+I RAD+ALYVAK SGR+R +
Sbjct: 255 MQLTISGGVAEVAPGDDLRTLINRADEALYVAKNSGRDRCL 295


>gi|162661179|gb|EDQ48693.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 866

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 65/210 (30%), Positives = 111/210 (52%), Gaps = 18/210 (8%)

Query: 62  EYILVENLSLVIISITISLLLGYIS-----GSILK---ELFISYNRISQLSRIDCLSGLL 113
           E+I ++++ +V I I  ++L+          S++K   +L +      +L +ID L+GL 
Sbjct: 47  EFIQIQSVFIVSIMIGHTILVRVKEFMRHLESVMKSEQQLLVERTISDKLLKIDALTGLY 106

Query: 114 NHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           NH AF   L +       Y   L +   DID FK++NDN+GH VGD V+  ++ +++   
Sbjct: 107 NHKAFHEYLEALLEQCEKYQLPLQLAIIDIDNFKKVNDNYGHRVGDVVLKEVASKVMSTM 166

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
               F  R GGEEFA      + +EA  +A  LR+ I  +++  +  P   +T+S G+  
Sbjct: 167 TPNDFAARYGGEEFAIIMADKTLEEAERMAEQLRERIARTELPHTVKP---VTVSIGLCN 223

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               +   ++  +AD ALY AK++G+N+VV
Sbjct: 224 FQQGDDKESLFRKADMALYQAKRTGKNKVV 253


>gi|300855913|ref|YP_003780897.1| membrane associated GGDEF domain-containing protein [Clostridium
           ljungdahlii DSM 13528]
 gi|300436028|gb|ADK15795.1| membrane associated GGDEF domain containing protein [Clostridium
           ljungdahlii DSM 13528]
          Length = 378

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 110/212 (51%), Gaps = 17/212 (8%)

Query: 64  ILVENLSLVIISITI----SLLLGYISGSILKEL---FISYNRISQLSRIDCLSGLLNHS 116
           IL++N  L++  + I    +LLL Y     ++ L   F +Y  +   + ID L+GL N  
Sbjct: 151 ILIKNTQLLVQFLIIYYLNNLLLTYFVYKFMEHLSKAFEAYRTLRTEASIDFLTGLNNVR 210

Query: 117 AFISSLGSYN---------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
            F  SL   +         + LS++F DIDYFK+IND +GH  GD V+  L++ L     
Sbjct: 211 QFNKSLHRISIAVQKKEEIQYLSLIFLDIDYFKEINDKYGHGSGDIVLKNLANILTNTCR 270

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
               + R GGEEF+   L     +A  +A  +R+ +E    +IS+  +IHITIS G++  
Sbjct: 271 AFDIISRNGGEEFSVLLLNCPTADAIQVAERIRQNVEAYSFHISNKTTIHITISIGVSTY 330

Query: 228 CH-KEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 I  ++  AD ALY AK  GRN+++ +
Sbjct: 331 PSLTNNIDNLLSDADTALYKAKNEGRNKIILY 362


>gi|296534437|ref|ZP_06896877.1| GGDEF domain protein [Roseomonas cervicalis ATCC 49957]
 gi|296265236|gb|EFH11421.1| GGDEF domain protein [Roseomonas cervicalis ATCC 49957]
          Length = 509

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 89/165 (53%), Gaps = 8/165 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS-SLGSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152
           + + +  D L+GL N  +F++ +  S  E        +++  D+D+FK +ND+ GH  GD
Sbjct: 334 LRRQAETDALTGLANRGSFLARAAASLQEHAAAARPFTLLAIDLDHFKAVNDSAGHAAGD 393

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+   +++   V       GRLGGEEFA A   +   EA ILA  LR+ +    +   +
Sbjct: 394 TVLRLAAERCAAVLRQGDLFGRLGGEEFAVALPCAGAAEALILAERLRQALATIDLPRGA 453

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            P   +T S GIAE R  +  ++ ++ RAD ALY AK +GR+RV 
Sbjct: 454 APEGRLTASFGIAEARPGESDLAPLLRRADLALYSAKHAGRDRVT 498


>gi|254503193|ref|ZP_05115344.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
 gi|222439264|gb|EEE45943.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
          Length = 410

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 103/208 (49%), Gaps = 17/208 (8%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           P   L Y+++  +++VI+S +      +++ +I +       R  + +  D L+GL N  
Sbjct: 189 PIQPLAYLVLLMVAIVIVSAS------FVAMAIER----IQVRFEKQALTDSLTGLANRR 238

Query: 117 AFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           AFI +   +       +  +++  DID+FK IND FGH  GD+V+A     +  +F   +
Sbjct: 239 AFIKAAKRWFSSTAQTQAFTLILIDIDHFKSINDQFGHTAGDRVLASFGTAMKSIFPRAI 298

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
             GR+GGEEFA     + + +A  L   LR++I    I   S  S  IT+SAG+      
Sbjct: 299 PPGRIGGEEFAVLLPETEKADAVHLLGRLREVISQCAICPKSEAS-GITVSAGLITATTS 357

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCF 258
                    ADQ LY AKK+GRNR V  
Sbjct: 358 HDFEQAFDHADQLLYEAKKTGRNRHVAL 385


>gi|114569040|ref|YP_755720.1| diguanylate cyclase [Maricaulis maris MCS10]
 gi|114339502|gb|ABI64782.1| diguanylate cyclase [Maricaulis maris MCS10]
          Length = 384

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 88/159 (55%), Gaps = 9/159 (5%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N  AF + +  +        ++ ++V FDID+FKQ+ND  GH VGD V+  ++
Sbjct: 224 DHLTGLPNRRAFEALVNDHFEMAPSGEQQAALVVFDIDHFKQVNDGHGHDVGDAVLQHVA 283

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V RLGGEEF A      E     +A+ +R+ + +    +  G  + +T
Sbjct: 284 TVLQAAIRDTDHVARLGGEEFVALIHARPEASVHDIADRIRQAVADRPF-VLDGREVSVT 342

Query: 220 ISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           ISAG+ E    +P ++++  RADQALY AK +GRN+VV 
Sbjct: 343 ISAGLVEVSGGQPTLASLFKRADQALYKAKDAGRNQVVT 381


>gi|253997291|ref|YP_003049355.1| PAS/PAC sensor-containing diguanylate cyclase [Methylotenera
           mobilis JLW8]
 gi|253983970|gb|ACT48828.1| diguanylate cyclase with PAS/PAC sensor [Methylotenera mobilis
           JLW8]
          Length = 548

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 8/164 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           ++Q + ID L+ L N   F       +S    Y + +++   DID+FK+IND+ GH +GD
Sbjct: 381 LNQKAHIDYLTELNNRGHFMEQAEKELSRSQRYQKDMAMFMMDIDFFKKINDSHGHKIGD 440

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  L+D           +GR+GGEEFA     ++  EA  +A  LR  + +S++ +  
Sbjct: 441 IVLKKLADVCRQTLREVDIIGRIGGEEFAILLPETNRAEALEVAERLRLAVADSKVPMKD 500

Query: 213 GPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255
           G  +  T+S G++     +  I  ++ RADQALY AK+SGRNRV
Sbjct: 501 GLPVQYTVSIGVSSVASADDNIDMLLSRADQALYQAKQSGRNRV 544


>gi|261210921|ref|ZP_05925211.1| GGDEF family protein [Vibrio sp. RC341]
 gi|260839896|gb|EEX66496.1| GGDEF family protein [Vibrio sp. RC341]
          Length = 958

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 105/207 (50%), Gaps = 24/207 (11%)

Query: 71  LVIISITISLLLGYISGSILKELFI-------------SYNRISQLSRIDCLSGLLNHSA 117
           +++++  +SL++  I     +EL++                +  +LS+ D L+GL N  A
Sbjct: 743 MLVLAFAVSLVMWRIRALKRRELYLVEQVALQTHKLRLQAEKFEKLSKEDELTGLANRRA 802

Query: 118 F-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           F        S   +  +++SI   DID+FKQIND + H +GD+ I  +S QL+   G   
Sbjct: 803 FDLYLKQAFSRTDNPPQQVSIALLDIDHFKQINDRYSHIIGDQAIIAVSQQLLEYVGDKK 862

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAGIAERCH 229
            V R GGEEF     G  +   +   + LR+ IE  Q++ SS  P + +T+S G A+   
Sbjct: 863 RVARWGGEEFTILFFGEPKNAWSYFEH-LRRNIE--QMDFSSIVPGLAVTVSVGFADGSQ 919

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV 256
            E   + +  AD AL  AKK GRNRVV
Sbjct: 920 AENYESALKLADHALLTAKKLGRNRVV 946


>gi|194014703|ref|ZP_03053320.1| ABC superfamily ATP binding cassette transporter, binding protein
           [Bacillus pumilus ATCC 7061]
 gi|194013729|gb|EDW23294.1| ABC superfamily ATP binding cassette transporter, binding protein
           [Bacillus pumilus ATCC 7061]
          Length = 361

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 88/158 (55%), Gaps = 9/158 (5%)

Query: 107 DCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+G+LN        + AF         ++S+++ DIDYFK IND +GH  GD V+  +
Sbjct: 195 DFLTGVLNKRKFDEVLNDAFSMKFKQPIHQISLIYLDIDYFKSINDQYGHHEGDMVLKEI 254

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +L+    +  ++GR+GGEEFA      + ++   +A  LR+ I +  I + +G SIHI
Sbjct: 255 GKRLMKNTRSSDYIGRIGGEEFAVLLPNCTVEKTWQIAERLRRKIADQPIYLQNGMSIHI 314

Query: 219 TISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255
           T+S G A      P I  +   ADQ LY AK+SGRN+V
Sbjct: 315 TVSLGCAYFPGTSPNIKQLPIIADQELYKAKQSGRNQV 352


>gi|116873346|ref|YP_850127.1| GGDEF domain-containing protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116742224|emb|CAK21348.1| GGDEF domain protein [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 378

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 95/166 (57%), Gaps = 11/166 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q + +D L+GL N   F  +  +           LSI+  DIDYFK++ND +GH VG+
Sbjct: 205 LQQSTILDPLTGLTNFRHFDKTFETAFHHATLKKSNLSIIIIDIDYFKRVNDTYGHLVGN 264

Query: 153 KVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            V++  S  L+ + F     + R+GGEEFA      +  E   LA  +R+ +E  +I I+
Sbjct: 265 SVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIEIPIA 324

Query: 212 SGPSIHITISAGIAE-RCHKEPIS-TIIYRADQALYVAKKSGRNRV 255
           +  S+ ITISAGIA    H  P +  +++ ADQALY AK++GRN+V
Sbjct: 325 ASGSV-ITISAGIANYDGHNYPTADELLHAADQALYKAKRNGRNQV 369


>gi|153839620|ref|ZP_01992287.1| putative sensory box/ggdef family protein [Vibrio parahaemolyticus
           AQ3810]
 gi|260361492|ref|ZP_05774539.1| diguanylate cyclase [Vibrio parahaemolyticus K5030]
 gi|260878177|ref|ZP_05890532.1| diguanylate cyclase [Vibrio parahaemolyticus AN-5034]
 gi|260895463|ref|ZP_05903959.1| diguanylate cyclase [Vibrio parahaemolyticus Peru-466]
 gi|260903328|ref|ZP_05911723.1| diguanylate cyclase [Vibrio parahaemolyticus AQ4037]
 gi|149746859|gb|EDM57847.1| putative sensory box/ggdef family protein [Vibrio parahaemolyticus
           AQ3810]
 gi|308088054|gb|EFO37749.1| diguanylate cyclase [Vibrio parahaemolyticus Peru-466]
 gi|308094113|gb|EFO43808.1| diguanylate cyclase [Vibrio parahaemolyticus AN-5034]
 gi|308109540|gb|EFO47080.1| diguanylate cyclase [Vibrio parahaemolyticus AQ4037]
 gi|308112849|gb|EFO50389.1| diguanylate cyclase [Vibrio parahaemolyticus K5030]
          Length = 329

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 93/167 (55%), Gaps = 9/167 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ QLS  D L+GLLN  AFIS+L +        ++ LS +  DID+FK IND+ GH  
Sbjct: 141 QRLKQLSETDALTGLLNRRAFISNLDNAIIQHTKRSQTLSCLMIDIDHFKDINDSVGHFS 200

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VI  ++     V     F+GRLGGEEFA     ++  +A  +A  +R+ I+ +  ++
Sbjct: 201 GDHVITRIAHVCQGVIRGSDFIGRLGGEEFAVILTDTNAIQAYEVAERIRQAIQATICHV 260

Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                I  T+S G+AE    +     ++  AD+A+Y +K SGRN+V 
Sbjct: 261 DD-VEITTTVSIGVAELNSQQSNAKELLIEADKAMYYSKHSGRNQVT 306


>gi|144899221|emb|CAM76085.1| GGDEF domain [Magnetospirillum gryphiswaldense MSR-1]
          Length = 578

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 85/164 (51%), Gaps = 8/164 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+G  N   F+++ G+       Y   L+++  D+DYFK IND  GH  GD
Sbjct: 407 LRRLATTDSLTGAFNRRHFLAAAGTELERANRYGNPLTLLMLDVDYFKSINDAHGHGTGD 466

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +  L + L         +GRLGGEEFA     +    A I A  LR  + + ++++  
Sbjct: 467 DALRRLVEGLRHALRDIDVIGRLGGEEFAVLLPETGMAGALITAERLRAQVADLRLDLPD 526

Query: 213 GPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G  +  T+S GI A R     +  ++ RAD+ALY AK  GRNRV
Sbjct: 527 GGQLAFTVSIGIAAPRAEDGSVEAVLARADKALYRAKDEGRNRV 570


>gi|90423352|ref|YP_531722.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
 gi|90105366|gb|ABD87403.1| diguanylate cyclase (GGDEF domain) [Rhodopseudomonas palustris
           BisB18]
          Length = 456

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 90/178 (50%), Gaps = 17/178 (9%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           ++  EL     R++ L+  D L+GL N   F  +L S       Y    S++ FD+D FK
Sbjct: 272 AMAAELRDRAKRLAVLATTDRLTGLYNRLKFDETLASEIARAKRYKMPFSLIMFDVDLFK 331

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GHP+GD+V+  LSD           + R GGEEFA    GSS  EA ++A  LR
Sbjct: 332 TVNDRYGHPIGDRVLVGLSDLASSHLRETDMLARWGGEEFALLVTGSSRMEAYVVAEKLR 391

Query: 201 KIIEN---SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             I +    Q+         ++ S G+ E    +    ++ RAD ALY AK +GRNRV
Sbjct: 392 TAIAHVAFDQVG-------RVSCSFGVTEYRDGDIPELMVARADGALYQAKLNGRNRV 442


>gi|325292624|ref|YP_004278488.1| diguanylate cyclase [Agrobacterium sp. H13-3]
 gi|325060477|gb|ADY64168.1| diguanylate cyclase [Agrobacterium sp. H13-3]
          Length = 415

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 90/166 (54%), Gaps = 9/166 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
           R+ +L+  D L+G+LN    +       ++       +++  FDID+FK+IND +GH  G
Sbjct: 211 RLHRLAMTDHLTGVLNRRGLLEEFEHIKKRSPGSSRYVALALFDIDHFKKINDKYGHQSG 270

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+    +    V G      R+GGEEFA  A   S      LA  +R  +  S+I+ +
Sbjct: 271 DAVLVHFCNMAQRVIGERGLFVRMGGEEFALVAEVESPSSTVTLAEAIRSNLRLSKIS-A 329

Query: 212 SGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
            G +I +T S GI+E   K+  +S ++  AD+ALY AKK+GRNR V
Sbjct: 330 RGENIEVTTSVGISEAMIKDADLSVMMTEADRALYAAKKAGRNRTV 375


>gi|152991219|ref|YP_001356941.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
 gi|151423080|dbj|BAF70584.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
          Length = 350

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 96/177 (54%), Gaps = 13/177 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNE----KLSIVFFDIDYFK 140
           + +EL  + N+    +  D L+ L N   F       L  +NE      S++  DID FK
Sbjct: 178 LRRELRDTKNK----AEFDYLTELFNRRKFEEYFHKLLKEFNEGEGKPFSLIILDIDDFK 233

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           QIND +GH +GD+V+  LS  +     +     R+GGEEFA     +   EA  +A  LR
Sbjct: 234 QINDTYGHLLGDEVLKNLSSLIKTFLHSAHIPARIGGEEFAILLPETPLDEAKTIAERLR 293

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           K +EN  I I+ G  ++ T+S G+A+    + + +++ RAD+ALY AK++G+N V+ 
Sbjct: 294 KTVENRTIPIAEG-DLNFTVSIGVAQVQKGDTMDSLLKRADEALYEAKRNGKNMVIA 349


>gi|322616865|gb|EFY13773.1| hypothetical protein SEEM315_15849 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618104|gb|EFY14996.1| hypothetical protein SEEM971_05223 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625775|gb|EFY22594.1| hypothetical protein SEEM973_09022 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626225|gb|EFY23035.1| hypothetical protein SEEM974_05820 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633831|gb|EFY30571.1| hypothetical protein SEEM201_02229 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638985|gb|EFY35678.1| hypothetical protein SEEM202_10223 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322644190|gb|EFY40735.1| hypothetical protein SEEM054_02762 [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649513|gb|EFY45945.1| hypothetical protein SEEM675_03416 [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655420|gb|EFY51728.1| hypothetical protein SEEM965_14143 [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660824|gb|EFY57055.1| hypothetical protein SEEM19N_10368 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662880|gb|EFY59087.1| hypothetical protein SEEM801_18907 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668064|gb|EFY64223.1| hypothetical protein SEEM507_21371 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674175|gb|EFY70269.1| hypothetical protein SEEM877_13603 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675471|gb|EFY71545.1| hypothetical protein SEEM867_03537 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683114|gb|EFY79130.1| hypothetical protein SEEM180_11167 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686808|gb|EFY82786.1| hypothetical protein SEEM600_19160 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195300|gb|EFZ80480.1| hypothetical protein SEEM581_08859 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199193|gb|EFZ84288.1| hypothetical protein SEEM501_00435 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202994|gb|EFZ88027.1| hypothetical protein SEEM460_02776 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207449|gb|EFZ92397.1| hypothetical protein SEEM020_07058 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323209938|gb|EFZ94850.1| hypothetical protein SEEM6152_06543 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217432|gb|EGA02151.1| hypothetical protein SEEM0077_21207 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220568|gb|EGA05019.1| hypothetical protein SEEM0047_12196 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226618|gb|EGA10820.1| hypothetical protein SEEM0055_15959 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231454|gb|EGA15567.1| hypothetical protein SEEM0052_14571 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235895|gb|EGA19974.1| hypothetical protein SEEM3312_13539 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240464|gb|EGA24507.1| hypothetical protein SEEM5258_10831 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245357|gb|EGA29357.1| hypothetical protein SEEM1156_16481 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246723|gb|EGA30695.1| hypothetical protein SEEM9199_07616 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253578|gb|EGA37406.1| hypothetical protein SEEM8282_15393 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257716|gb|EGA41399.1| hypothetical protein SEEM8283_00602 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260379|gb|EGA43995.1| hypothetical protein SEEM8284_20528 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266830|gb|EGA50316.1| hypothetical protein SEEM8285_18914 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269036|gb|EGA52492.1| hypothetical protein SEEM8287_03697 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 376

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 103/199 (51%), Gaps = 13/199 (6%)

Query: 71  LVIISITISLLLG-YISGSILKELFISYN-------RISQLSRIDCLSGLLNHSAFISSL 122
           LV +++T  L+ G +I      E ++ Y        R+  ++  D L+G  N  +  S L
Sbjct: 177 LVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANRRSMESFL 236

Query: 123 GS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGE 178
           G      E  +++  D+DYFK  ND++GH  GD  +A ++  +     TP   V R GGE
Sbjct: 237 GDALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVACVVKRSIRTPADLVARYGGE 296

Query: 179 EFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EF      SS  EAA++A  ++  + E +  + +S  S  +T+S GI      + ++ II
Sbjct: 297 EFVVVLPSSSLNEAALVAQRIQTNLRETALPHAASAVSETVTVSMGITLSTAGDTVTGII 356

Query: 238 YRADQALYVAKKSGRNRVV 256
            RAD+ALY AK+ GRNR V
Sbjct: 357 ARADEALYRAKQQGRNRWV 375


>gi|258621551|ref|ZP_05716584.1| GGDEF family protein [Vibrio mimicus VM573]
 gi|258586169|gb|EEW10885.1| GGDEF family protein [Vibrio mimicus VM573]
          Length = 978

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 64/174 (36%), Positives = 93/174 (53%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L     +  +LS+ D L+GL N  AF        S +    +++SI   DID+FKQIN
Sbjct: 796 QKLRFQAEKFERLSKEDELTGLANRRAFDVYLKQAFSRVEHPGQQVSIGLLDIDHFKQIN 855

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D + H +GD+ I  +S QL+        V R GGEEF    +G   +EA     +LR  I
Sbjct: 856 DRYSHIIGDQAIVAVSQQLLKYVRDKTRVARWGGEEFTILYVGDP-KEAWSYFEELRCTI 914

Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E  Q++ S+  P + +T+S G A+    E   +++  AD AL  AKK GRNRVV
Sbjct: 915 E--QVDFSTVAPGLTVTVSVGFADSQQAESYESVLKLADHALLTAKKLGRNRVV 966


>gi|194366180|ref|YP_002028790.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
 gi|194348984|gb|ACF52107.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
          Length = 479

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 101/191 (52%), Gaps = 17/191 (8%)

Query: 78  ISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128
           I  +LGY   S+L ++ I   R  +  L+R D L+GL N   F  SLGS + +       
Sbjct: 276 IGAMLGYALRSVLTQVEIQRQRDELEALARRDPLTGLGNRRNFDESLGSAHRRARRQGLG 335

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAALG 186
           L+++  DID+FK++ND +GHP GD+ +  ++  L   +  G  +   R GGEEF AA   
Sbjct: 336 LAVLMIDIDHFKRLNDTYGHPEGDRRLRAVAGILDGCLQRGDDLLA-RYGGEEFIAALPS 394

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQAL 244
                A  L   LR  +E + +  +      +TIS G+A +  +E      ++ RADQAL
Sbjct: 395 PDITHALSLGERLRAAVETAGLPAAEAV---VTISIGVAWQAARENGDPRDLVDRADQAL 451

Query: 245 YVAKKSGRNRV 255
           Y AK +GRNRV
Sbjct: 452 YRAKHAGRNRV 462


>gi|95929052|ref|ZP_01311797.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95134953|gb|EAT16607.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 825

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 90/162 (55%), Gaps = 7/162 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS------SLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGD 152
           +S+L+R D L+GL N   F+       SL   NE ++  +  D+D+FKQ+ND +GH VGD
Sbjct: 652 LSRLARTDPLTGLHNRRYFMEFAQQYISLAHRNETEMQFLSLDLDHFKQVNDRYGHQVGD 711

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++   +  LV +  +   + R GGEEF      ++++ A + A  + + I + +   + 
Sbjct: 712 DILKLFATTLVPLLRSTDLLARTGGEEFIICLQNTTQEGANVFARKIIETIRDLRYRTAE 771

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             ++  T+S GIA     E +  ++ R+D ALY AKK+GR+R
Sbjct: 772 DETVTFTVSIGIASLFRGENLEDVLCRSDHALYRAKKNGRDR 813


>gi|255606612|ref|XP_002538597.1| protein with unknown function [Ricinus communis]
 gi|223511408|gb|EEF23786.1| protein with unknown function [Ricinus communis]
          Length = 248

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 101/182 (55%), Gaps = 8/182 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYN---EKLSIVFFDIDYFKQI 142
           +++L     ++S++ RID L+G+LN      AF + +  Y    E LS+   DID FK +
Sbjct: 67  MEKLQEELQQLSEVVRIDQLTGVLNRRGMDEAFSTEIARYRRSGELLSVALLDIDNFKML 126

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD  +  L+  +         V R+GGEEF      ++ +EA +  + L++ 
Sbjct: 127 NDQHGHAAGDSALKHLASVVKRAVRPTDIVTRMGGEEFVVILPNTNLEEAVVTMSRLQRA 186

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +   +  + +   + IT SAG+A    ++ +++I+ RADQA+Y+AKK G+NRV+   D++
Sbjct: 187 L-TKEYFLGNNQKLLITFSAGVALFKTEDDVNSILSRADQAMYLAKKRGKNRVMTEVDLQ 245

Query: 263 NN 264
            N
Sbjct: 246 AN 247


>gi|146283962|ref|YP_001174115.1| two-component response regulator [Pseudomonas stutzeri A1501]
 gi|145572167|gb|ABP81273.1| probable two-component response regulator [Pseudomonas stutzeri
           A1501]
          Length = 531

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 83/157 (52%), Gaps = 10/157 (6%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +  L          N  LS    DID+FKQ+ND FGHP+GD+VI  L+
Sbjct: 374 DSLTGLYNHTHSLQLLEDARFRARRDNRPLSFAMLDIDHFKQVNDTFGHPMGDRVIKSLA 433

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218
             L         +GR GGEEFA     +  + A  + N++R+    ++I   + P  +  
Sbjct: 434 LFLKQRLRKTDHIGRYGGEEFAVVLPDTPAEAACKVLNEIRQRF--AEIRFPAQPRDLSC 491

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T S GI E      + T+  +AD+ALY AK +GRNRV
Sbjct: 492 TFSCGITELTADAEVKTLTQQADEALYRAKHAGRNRV 528


>gi|115524865|ref|YP_781776.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
 gi|115518812|gb|ABJ06796.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
          Length = 418

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 82/157 (52%), Gaps = 9/157 (5%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+GL N   F       I    +    ++++ FDIDYFK IND FGHP GD+++   
Sbjct: 220 IDPLTGLFNRRGFTEATTRMIEREAAAGRPVTVMIFDIDYFKSINDRFGHPAGDELLKLF 279

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  +          GR+GGEEF AA L  S  EA + A  +R   E   I + + P +  
Sbjct: 280 ATLITSSLRITDLSGRIGGEEF-AALLPCSIDEALVAAERVRWSFETCGIVVDNDP-VAT 337

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T+S G+A    +  +  ++  AD ALY AK+ GRNRV
Sbjct: 338 TVSIGVAGGPARTELDVLLAAADTALYQAKRGGRNRV 374


>gi|327482289|gb|AEA85599.1| two-component response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 531

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 83/157 (52%), Gaps = 10/157 (6%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +  L          N  LS    DID+FKQ+ND FGHP+GD+VI  L+
Sbjct: 374 DSLTGLYNHTHSLQLLEDARFRARRDNRPLSFAMLDIDHFKQVNDTFGHPMGDRVIKSLA 433

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218
             L         +GR GGEEFA     +  + A  + N++R+    ++I   + P  +  
Sbjct: 434 LFLKQRLRKTDHIGRYGGEEFAVVLPDTPAEAACKVLNEIRQRF--AEIRFPAQPRDLSC 491

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T S GI E      + T+  +AD+ALY AK +GRNRV
Sbjct: 492 TFSCGITELTADAEVKTLTQQADEALYRAKHAGRNRV 528


>gi|296271637|ref|YP_003654268.1| 7TM domain sensor diguanylate cyclase [Arcobacter nitrofigilis DSM
           7299]
 gi|296095812|gb|ADG91762.1| 7TM domain sensor diguanylate cyclase [Arcobacter nitrofigilis DSM
           7299]
          Length = 580

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/174 (36%), Positives = 93/174 (53%), Gaps = 9/174 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIN 143
           KEL  S  ++  L+  D LS LLN        +  IS     N  +S++ FDID FK IN
Sbjct: 403 KELEESKKKLEILANKDFLSDLLNRRPLFEISNRLISLAKRENTTISVLLFDIDKFKAIN 462

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD+VI   S  L         V R+GGEEF      ++ ++A I+A ++RK +
Sbjct: 463 DTYGHKEGDEVIKAFSKILKKDRRNSDIVARIGGEEFVILLPSTTHKDAFIIAEEIRKEV 522

Query: 204 ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E  Q+  +   +I  T+S G++  R     +  +I RAD+ LY+AK +GRN VV
Sbjct: 523 ETFQVK-TKDSTICFTVSCGVSSLRKEDNNMDELIARADKRLYMAKNNGRNVVV 575


>gi|307726536|ref|YP_003909749.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1003]
 gi|307587061|gb|ADN60458.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1003]
          Length = 312

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 106/203 (52%), Gaps = 11/203 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           L  +  +V + +TIS +  ++S  + +E   +  ++ + +  D L+G+ N   F + L  
Sbjct: 113 LTRDREVVAVCVTISDVT-HVS-IVQREREEAVAKLQEYADRDGLTGIANRRYFEARLLD 170

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   +S++ FD+D+FK+IND FGH VGD V+  ++ ++  V       GR GG
Sbjct: 171 EYTRWQRYGGDMSVLLFDLDHFKKINDQFGHGVGDTVLRVMAQRVAGVVRAQDTFGRFGG 230

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS-AGIAERCHKEPISTI 236
           EEFA     +  ++A  +A  +R+ I ++ + +  G S+ +T S  G A R        +
Sbjct: 231 EEFALLLPCTPLEDAMRVAEKIRRTIADTPVEV-QGTSVPVTASVGGAAARAGLPAYDVL 289

Query: 237 IYRADQALYVAKKSGRNRVVCFS 259
           I  AD ALY AK+ GRNR V  +
Sbjct: 290 INEADAALYSAKRQGRNRCVALT 312


>gi|144899153|emb|CAM76017.1| GGDEF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 392

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 104/213 (48%), Gaps = 16/213 (7%)

Query: 60  GLEYILVENLSL-----VIISITISLLLGYISGSI----LKELFISYNRISQLSRIDCLS 110
           G+ +++ EN        V +S T+ + L  +S  I    L+E   S   +  L+ +D L+
Sbjct: 174 GVAWVMYENPQAAPAVAVWLSYTLMIALFCLSAQIYGLPLQEFTRSERTLEHLASVDPLT 233

Query: 111 GLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            +LN  +F +       S  S     S++  D+D FK IND  GHP GD+VI   +  L 
Sbjct: 234 EVLNRRSFFAKAQGLWQSHQSDGRPFSVLMLDLDRFKAINDRHGHPTGDRVIVAFARLLR 293

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   +GR+GGEEFA    G +  +A  +A  +R   E  ++    G  + +T+S G
Sbjct: 294 DAMRHDDLLGRMGGEEFAIILPGVATAQALEVAERIRAASEAVEVLSDDGFRVRLTVSIG 353

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +A       +  ++ RAD ALY AK  GRNRVV
Sbjct: 354 LALGDGATSLDDLMKRADAALYQAKDQGRNRVV 386


>gi|78776812|ref|YP_393127.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78497352|gb|ABB43892.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM
           1251]
          Length = 611

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 85/167 (50%), Gaps = 15/167 (8%)

Query: 99  RISQLSRIDCLSGLLNHSA---------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
            + +L+ ID L+G  N            F+    S N  LS++  DID+FK +ND +GH 
Sbjct: 449 ELERLASIDKLTGAYNRRMIDEFMKKEIFLHVRDSKN--LSLIMADIDHFKLVNDTYGHQ 506

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V++ +   +          GR GGEEF      +S Q+A ILA  +R+ IEN    
Sbjct: 507 AGDAVLSDVGRIISSTIRKSDIFGRYGGEEFIVICPNTSSQQALILAQKIREEIENFHF- 565

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                  H TIS G+A     + +  II RAD ALY+AKK GRNRVV
Sbjct: 566 ---AEVGHKTISLGVATLIANDEVENIIKRADDALYIAKKEGRNRVV 609


>gi|269962456|ref|ZP_06176805.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832752|gb|EEZ86862.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 329

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 94/168 (55%), Gaps = 9/168 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +LS  D L+G+LN  AF++SL          ++ L+ V  DID+FK+IND  GH  G
Sbjct: 142 RLKELSETDELTGVLNRRAFLASLDRSLSSHSHPSQPLTCVMIDIDHFKEINDQVGHFSG 201

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+VI  ++           F+GRLGGEEFA     +S  +A  +A  +R+ I+N+   + 
Sbjct: 202 DQVINHVAKICQRAIRGTDFIGRLGGEEFAVILANTSAIQAYEVAERIRQAIQNAPCKV- 260

Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
            G  I  T+S G+AE   +      ++  AD+A+Y +K SGRN+V  +
Sbjct: 261 DGIEISTTVSIGVAEYDGQVLSAKELMVNADKAMYYSKHSGRNQVTLY 308


>gi|289208563|ref|YP_003460629.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
 gi|288944194|gb|ADC71893.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
          Length = 336

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 17/164 (10%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+G+ N   F       ++    YN  LS++F D+DYFK++ND +GH  GD +
Sbjct: 168 RLASTDALTGVWNRQKFKTEAEHEVARAERYNLPLSLIFLDLDYFKEVNDRYGHATGDAI 227

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +  +L         +GR GGEEF      +    AA+LA  LR+ I ++       P
Sbjct: 228 LREMCQRLQACLRESDRLGRWGGEEFLILVPHADSDRAALLAEKLRQAIADT-------P 280

Query: 215 SIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + H   ++IS G+  R   + +  ++ +AD ALY AK  GRNRV
Sbjct: 281 AAHGQPMSISLGVVSREPGDALEDLVRKADAALYRAKARGRNRV 324


>gi|117618610|ref|YP_855243.1| GGDEF family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117560017|gb|ABK36965.1| GGDEF family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 321

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/172 (38%), Positives = 92/172 (53%), Gaps = 5/172 (2%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           +KEL  + N   +L+  D L+ LLN  AF   I SL    +  S++  DID FK  ND +
Sbjct: 146 IKELREALNETRKLANEDALTSLLNRRAFDLEIESLIRSKQPFSLILSDIDRFKSFNDEY 205

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH +GD+V+   S +L       +   RLGGEEFA      S   +  +A  LR+ IE  
Sbjct: 206 GHLLGDQVLRAFSKRLRETCKEGVTAYRLGGEEFALLVPMRSLALSRQMAESLRRAIEKM 265

Query: 207 QI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            I +  SG  I HIT S G+ E   +E   +++ R D+ LY AK+ GRNRV+
Sbjct: 266 SILDRKSGRRIDHITASFGVGEYSGQETGDSLVERTDKLLYKAKELGRNRVM 317


>gi|297584952|ref|YP_003700732.1| diguanylate cyclase [Bacillus selenitireducens MLS10]
 gi|297143409|gb|ADI00167.1| diguanylate cyclase [Bacillus selenitireducens MLS10]
          Length = 354

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 120/229 (52%), Gaps = 18/229 (7%)

Query: 40  ATVIFIANIFLFYIGLT--PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           + +I+I N  LF++  +  P    E  L  NLS+ +  I +      I  +   EL    
Sbjct: 129 SLMIWIFNFSLFFVYWSDFPIPIREQALHYNLSIFVYIIFLYFSRKIIHNNAKNEL---- 184

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-SYNEKL---SIVFFDIDYFKQINDNFGHPVGDK 153
             +S+L+  D L+G+ N       L  SY  K+   S++  DIDYFK++ND  GH +GDK
Sbjct: 185 --LSELAYKDELTGVANRRQIYEWLHLSYKNKVKPVSVIMLDIDYFKKVNDIHGHLIGDK 242

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  L+  +        ++GR GGEEF   +  + +Q A  LA  LR+ +E+    I   
Sbjct: 243 VLIELTQLIENELSDQSYLGRWGGEEFIILSYQTKDQ-AKKLAETLREQVESYSF-IEDH 300

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC-FSDI 261
           P   ITIS+G+ E    + + +++ RAD+ LY AK++GRNRV   F D+
Sbjct: 301 P---ITISSGVDEMQQDDTVDSLVNRADKLLYQAKETGRNRVCSDFQDL 346


>gi|152998825|ref|YP_001364506.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|151363443|gb|ABS06443.1| diguanylate cyclase [Shewanella baltica OS185]
          Length = 486

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 102/191 (53%), Gaps = 13/191 (6%)

Query: 74  ISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEK---- 128
           +S+ ++L + +IS   L      Y R +  ++  D L+G  N   F        +K    
Sbjct: 297 LSLMVTLGILFISNMTLGR----YQRKLEVMASTDKLTGAANRQVFDEYFRQALDKAKLA 352

Query: 129 ---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              +SI+  DID+FK++ND++GH +GD V+  +++ L         + R GGEEF     
Sbjct: 353 QSPISILLLDIDHFKKVNDSYGHGIGDLVLKTMTNMLRGALQQEDILCRWGGEEFLILLP 412

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
           G     AA LA  +R++I   +I ++ G  I IT S G+AE   +EP   +I RAD ALY
Sbjct: 413 GMDLTRAAELAEQIRELIFQREIKVN-GLHISITASIGVAEHQAQEPAEDLIKRADLALY 471

Query: 246 VAKKSGRNRVV 256
            AK++GRN+VV
Sbjct: 472 QAKEAGRNQVV 482


>gi|119476529|ref|ZP_01616880.1| GGDEF domain protein [marine gamma proteobacterium HTCC2143]
 gi|119450393|gb|EAW31628.1| GGDEF domain protein [marine gamma proteobacterium HTCC2143]
          Length = 331

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 106/209 (50%), Gaps = 11/209 (5%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSI---LKELFISYNRISQLSRIDCLSGLLN 114
           F G  Y     L L+I  IT++ L      SI    K+   +  +  QL+R D L+ L N
Sbjct: 116 FGGANYETAFKLRLIIAFITVTFLAACYEYSIEQSYKDTLQASEQFEQLARTDQLTKLCN 175

Query: 115 HSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
               ++        +    + +SI+  D+D+FK++ND +GH  GD V+  L++    +  
Sbjct: 176 RRGALTVIEQEQRRMSRNKQAMSIILCDVDHFKKVNDQYGHNTGDAVLISLAETFTQLIR 235

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
               + R GGEEF      +S + A IL+  + +++++  I++  G  I +T+S G+ E 
Sbjct: 236 KQDTIARWGGEEFLFVLPETSAENAYILSQKIHQVLQDQLIDV-EGIKIAVTVSMGVTEM 294

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVV 256
              +    II +AD+ LY AK++GRN+ +
Sbjct: 295 HGNQAFDEIINQADKHLYEAKRAGRNQTM 323


>gi|254506607|ref|ZP_05118748.1| sensor protein [Vibrio parahaemolyticus 16]
 gi|219550480|gb|EED27464.1| sensor protein [Vibrio parahaemolyticus 16]
          Length = 321

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/177 (36%), Positives = 90/177 (50%), Gaps = 15/177 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDN 145
           L  S  ++S LSR D L+ L N   + + L    E         S+V FDID+FK++ND 
Sbjct: 143 LMDSNQKLSDLSRTDGLTQLFNRRYWETCLMKEYESCKISGAVSSLVIFDIDHFKRVNDT 202

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH VGD VI   +++L     T    GR GGEEF     G+   +A      LRK IE+
Sbjct: 203 YGHTVGDHVIRHTANELRKASRTSDVCGRYGGEEFTVLLPGTCANQALYFTERLRKKIES 262

Query: 206 SQINISSGPSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNRVVCF 258
           S +    G ++  TIS GI   C   P  +     +  AD+ALY +K++GRNR   F
Sbjct: 263 SIVEC-EGYNVKYTISLGI---CEISPYQSNHLNWLEHADKALYFSKETGRNRSTVF 315


>gi|298529260|ref|ZP_07016663.1| diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510696|gb|EFI34599.1| diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 365

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 87/174 (50%), Gaps = 12/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSA---FISSLG----SYNEKLSIVFFDIDYFKQIN 143
           ++  I  N + +L+  D L+GL N  A   F+         Y  K+S++  D+D FKQ+N
Sbjct: 195 RDALIWNNSLQELASTDMLTGLANRRAAEDFLEKQAYANRRYGRKVSVIMADVDLFKQVN 254

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD V+  L   L         V R GGEEF   A     QEA  LA   R  I
Sbjct: 255 DKYGHSRGDMVLVELGRILRNSLRETDLVARWGGEEFLIVAPEIDMQEAKELAERCRCAI 314

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + Q+       I++T+S G+ E   K+ + T++ RAD  LY AK SGRN +V 
Sbjct: 315 ASRQV-----AGINLTMSFGVTELREKDSVDTVLSRADNLLYKAKSSGRNLIVA 363


>gi|149910444|ref|ZP_01899085.1| sensory box/GGDEF family protein [Moritella sp. PE36]
 gi|149806503|gb|EDM66474.1| sensory box/GGDEF family protein [Moritella sp. PE36]
          Length = 620

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 101/185 (54%), Gaps = 11/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQ 141
           I  EL  +  +  +LS ID L+ + N   F S L  Y        +++S++F D+D FK 
Sbjct: 421 IEHELEQAIEKFDELSSIDELTKIANRRTFDSKLQHYWSTHHREVKEMSLLFCDVDSFKL 480

Query: 142 INDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            NDN+GHP+GD V+A ++  +   V      V R GGEEFA     + E+ A  LA  + 
Sbjct: 481 YNDNYGHPMGDTVLANIAQVMDEQVHRGADLVARYGGEEFAVILPNTDEEGAIRLAIKII 540

Query: 201 KIIENSQI-NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVC 257
             +EN  I +  S  + H+T+S G+A  C ++  S   ++  AD+ALY+AK++GRN+   
Sbjct: 541 AAVENLAIEHTHSKAAKHVTLSIGVATMCPEDESSEAQLLENADKALYLAKENGRNQYCV 600

Query: 258 FSDIE 262
           + D E
Sbjct: 601 YRDEE 605


>gi|283850974|ref|ZP_06368259.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
 gi|283573620|gb|EFC21595.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
          Length = 427

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 86/164 (52%), Gaps = 11/164 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++L+  D L+G  N   F       I   G Y E LS++ FDID FK +ND +GH  GD
Sbjct: 240 LTELAVTDQLTGAYNRLKFNQVMEHEIKRTGRYAEPLSVIMFDIDRFKVVNDTYGHAAGD 299

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++  L+ ++        ++ R GGEEF  AA  +   +AA+LA  LR ++  +      
Sbjct: 300 DMLRELTRRVQAAIRAVDWLFRYGGEEFVVAAPHTGRAQAAVLAEKLRALVAGAPFPH-- 357

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              I  +IS G+ E    E +  ++ R D ALY AK SGRNRVV
Sbjct: 358 --GIAGSISLGVTELAPGETVEELMQRVDAALYEAKNSGRNRVV 399


>gi|291296842|ref|YP_003508240.1| diguanylate cyclase [Meiothermus ruber DSM 1279]
 gi|290471801|gb|ADD29220.1| diguanylate cyclase [Meiothermus ruber DSM 1279]
          Length = 351

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/175 (36%), Positives = 91/175 (52%), Gaps = 11/175 (6%)

Query: 88  SILKELFISYNR----ISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFK 140
           +I+K+     NR    +  L+R D L+GL N    S  +     +   L +V  DID FK
Sbjct: 176 AIVKDQLALANRQVEEMHALARTDPLTGLPNRLALSELLEEASQHMHGLYLVLLDIDRFK 235

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           QIND FGH  GD+V+  ++ +L V       +GR GGEEF     G S+Q+       LR
Sbjct: 236 QINDRFGHAAGDEVLREVARRLRVSMRKEDVLGRWGGEEFMILMRGESQQDVPAAVERLR 295

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + I      +  GP   ++ S G+AE    + I  ++ RAD+ALY AK+ GRNRV
Sbjct: 296 EDIAFWPFKL-VGP---VSASFGVAEGHIGDSIHALVERADRALYEAKRLGRNRV 346


>gi|159184686|ref|NP_354267.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
 gi|159139978|gb|AAK87052.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
          Length = 415

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 16/202 (7%)

Query: 75  SITISLLLGY-----ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128
           +++IS +LG+     IS  I+ E   +  R+ +L+  D L+G+LN    +       ++ 
Sbjct: 184 ALSISGMLGFTAIIMISAKIIME--DTEIRLHRLAMTDHLTGVLNRRGLLEEFEHIKKRS 241

Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                 +++V FDID+FK+IND +GH  GD V+    +    V G      R+GGEEFA 
Sbjct: 242 HGSDRYVALVLFDIDHFKKINDRYGHQSGDAVLVHFCNIAQRVIGERGLFVRMGGEEFAL 301

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRAD 241
            A   S      LA  +R  +  S+I  +   +I +T S GI+E   K+  +S ++  AD
Sbjct: 302 VAEVESPSSTVTLAEAIRSNLRLSKIT-ARNEAIKVTTSVGISEAMIKDADLSVMMTEAD 360

Query: 242 QALYVAKKSGRNRVVCFSDIEN 263
           +ALY AKK+GRNR V   +  N
Sbjct: 361 RALYAAKKAGRNRTVIHVNSAN 382


>gi|320085625|emb|CBY95403.1| Cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 353

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 30/267 (11%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGL-------TPFYGLEYILVE---- 67
           + S+  + F++++ + F+  ++ ++ +  +   Y  L        P + L  +L      
Sbjct: 87  MWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLW-LTALLASVQLN 145

Query: 68  ---NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDCLSGLLN 114
              N+  +++ +T++ +L Y   I      E ++ Y        R+  ++  D L+G  N
Sbjct: 146 QYMNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTAN 205

Query: 115 HSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM- 170
             +  S LG      E  +++  D+DYFK  ND++GH  GD  +A ++  +     TP  
Sbjct: 206 RRSMESFLGDALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVACVVKRSIRTPAD 265

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCH 229
            V R GGEEF      SS  EAA++A  ++  + E +  + +S  S  +T+S GI     
Sbjct: 266 LVARYGGEEFVVVLPSSSLNEAALVAQRIQTNLRETALPHAASAVSETVTVSMGITLSTA 325

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV 256
            + ++ II RAD+ALY AK+ GRNR V
Sbjct: 326 GDTVTGIIARADEALYRAKQQGRNRWV 352


>gi|241767604|ref|ZP_04765259.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
 gi|241361502|gb|EER57938.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
          Length = 389

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 130/264 (49%), Gaps = 27/264 (10%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFF--SIFIATVIFIANIFLFYIGLTPFYGL 61
            L+   ++W   E+   +     +++   +     + +      A++ +  +GL     L
Sbjct: 128 GLQALWALWAVVERRRATVGRGAWLLMAGLALEAGVLLVRASLAASLPVPQVGLLQGGTL 187

Query: 62  EYI-LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           + +  +    +V++S      LG+++  + ++     NR+  ++ +D L+G  N  A IS
Sbjct: 188 QTLTFMATFGVVLLSS-----LGFVT--MARDRADEANRV--MAAVDALTGAANRRALIS 238

Query: 121 SLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           +L           E +S++  DID+FK++ND +GH  GD+V+  +   L     +   VG
Sbjct: 239 ALDRDVARAVRTREPISVLMVDIDHFKRVNDQYGHQAGDQVLCRVVQVLQERVRSQDLVG 298

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKE 231
           R GGEEF     G+    A +LA+DLRK +E      S   +I +T+S G+   +    +
Sbjct: 299 RYGGEEFLVVLPGTDVAGALLLASDLRKAVE------SPAGAIGVTVSIGVFGGQLEPGD 352

Query: 232 PISTIIYRADQALYVAKKSGRNRV 255
               ++  AD+ALY+AK++GRNRV
Sbjct: 353 SWDVLVAAADRALYLAKENGRNRV 376


>gi|328472216|gb|EGF43086.1| putative sensory box/GGDEF family protein [Vibrio parahaemolyticus
           10329]
          Length = 349

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 92/167 (55%), Gaps = 9/167 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ QLS  D L+GLLN  AFIS+L +        ++ LS +  DID+FK IND  GH  
Sbjct: 161 QRLKQLSETDALTGLLNRRAFISNLDNAIIQHTKRSKTLSCLMIDIDHFKDINDRVGHFS 220

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VI  ++     V     F+GRLGGEEFA     ++  +A  +A  +R+ I+ +  ++
Sbjct: 221 GDHVITRIAHVCQGVIRGSDFIGRLGGEEFAVILTDTNAIQAYEVAERIRQAIQATICHV 280

Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                I  T+S G+AE    +     ++  AD+A+Y +K SGRN+V 
Sbjct: 281 DD-VEITTTVSIGVAELNSQQSNAKELLIEADKAMYYSKHSGRNQVT 326


>gi|300313918|ref|YP_003778010.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gi|300076703|gb|ADJ66102.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 515

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 100/200 (50%), Gaps = 16/200 (8%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           +SL I  +  + LL ++    L+    +  ++  L+R D L+ LLN  A   +L +  E+
Sbjct: 313 VSLAIFGLLTAWLLLHVRQE-LRRRVTAERQLEALARTDGLTDLLNRRALDEALQATWER 371

Query: 129 --------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV---GRLGG 177
                    S++F D+DYFK  ND +GH +GD V+  ++  L      P      GR GG
Sbjct: 372 CQRNLGASFSVLFIDVDYFKAYNDTYGHKLGDTVLKEVAATLTARL--PRHTDCAGRYGG 429

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPIST 235
           EEF      +  Q A ++A  L   +    I  +S P   +TIS G+A  ER H   +  
Sbjct: 430 EEFVVLLEQTDLQGAQMMAQRLCDAVRERHIAHTSSPLAVVTISVGVATLERDHHRRVED 489

Query: 236 IIYRADQALYVAKKSGRNRV 255
           ++  AD ALY AK++GR+RV
Sbjct: 490 VLNAADAALYRAKQAGRDRV 509


>gi|157364110|ref|YP_001470877.1| diguanylate cyclase [Thermotoga lettingae TMO]
 gi|157314714|gb|ABV33813.1| diguanylate cyclase [Thermotoga lettingae TMO]
          Length = 170

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 84/166 (50%), Gaps = 14/166 (8%)

Query: 101 SQLSRI---DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            +L RI   D L+GL N       +         Y    S++  DID+FK++ND +GH +
Sbjct: 6   EELERISITDKLNGLFNRYKMDEEMRKAFYLWKRYQRPFSLIMIDIDWFKKVNDTYGHQI 65

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDKV+  L   L         V R GGEEF   +L   E+ A  LA  +R  IE    N 
Sbjct: 66  GDKVLQELGALLKKSLRASDIVSRWGGEEFLVLSLEIDEKGAITLAEKIRSEIE----NY 121

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S   +I IT+S G+    + E I  ++   D+ +Y+AK+SGRNRVV
Sbjct: 122 SFAENIKITVSIGVCSAKNHETIDELLVSVDEKMYIAKQSGRNRVV 167


>gi|121609900|ref|YP_997707.1| diguanylate cyclase [Verminephrobacter eiseniae EF01-2]
 gi|121554540|gb|ABM58689.1| diguanylate cyclase [Verminephrobacter eiseniae EF01-2]
          Length = 612

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 90/173 (52%), Gaps = 9/173 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  + +     +RID L+G+ N   F        +      + LS++  DID FKQ+ND
Sbjct: 434 ELARARDEAEHFARIDMLTGVANRRYFEEVATMEFARTQRGQQALSVILIDIDLFKQVND 493

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD VI  ++           FV R+GGEEF+    G  +  A   A  LR+ I 
Sbjct: 494 RYGHAAGDAVIRAVARLAKESVRESDFVARIGGEEFSVLLPGIGQAPAFATAERLRERIA 553

Query: 205 NSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
              +    G S+  T S G++E+   +P  S+++ RADQALY AK++GRN+VV
Sbjct: 554 ACVVE-HDGHSLGFTASFGVSEQVADDPGFSSLLRRADQALYAAKQAGRNQVV 605


>gi|86147884|ref|ZP_01066189.1| putative sensory box/GGDEF family protein [Vibrio sp. MED222]
 gi|218710865|ref|YP_002418486.1| putative sensory box/GGDEF family protein [Vibrio splendidus LGP32]
 gi|85834311|gb|EAQ52464.1| putative sensory box/GGDEF family protein [Vibrio sp. MED222]
 gi|218323884|emb|CAV20245.1| putative sensory box/GGDEF family protein [Vibrio splendidus LGP32]
          Length = 316

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 94/163 (57%), Gaps = 7/163 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +L+ ID L+G+LN  AF+  L         + L+ +  DID+FK+IND  GH  GD+VI 
Sbjct: 134 ELAEIDELTGILNRRAFLLGLEKEFSQPPKQSLTCLMIDIDHFKEINDQVGHLSGDEVIV 193

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++           ++GRLGGEEF      +S  EA  +A  +RK IE++   +  G  I
Sbjct: 194 QVASLCQQSIDCDDYLGRLGGEEFGVILTHTSAIEAYYVAETIRKTIESTPCTV-DGHII 252

Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + T+S G+AE   H + I  ++ +AD+A+Y +K++GRN+V  +
Sbjct: 253 YPTVSIGVAEYTPHLKTIKELLAQADRAMYSSKQTGRNQVTLY 295


>gi|217971485|ref|YP_002356236.1| diguanylate cyclase [Shewanella baltica OS223]
 gi|217496620|gb|ACK44813.1| diguanylate cyclase [Shewanella baltica OS223]
          Length = 486

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 102/191 (53%), Gaps = 13/191 (6%)

Query: 74  ISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEK---- 128
           +S+ ++L + +IS   L      Y R +  ++  D L+G  N   F        +K    
Sbjct: 297 LSLMVTLGILFISNMTLGR----YQRKLEVMASTDKLTGAANRQVFDEYFRQALDKAKLA 352

Query: 129 ---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              +SI+  DID+FK++ND++GH +GD V+  +++ L         + R GGEEF     
Sbjct: 353 QSPISILLLDIDHFKKVNDSYGHGIGDLVLKTMTNMLRGALQQEDILCRWGGEEFLILLP 412

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
           G     AA LA  +R++I   +I ++ G  I IT S G+AE   +EP   +I RAD ALY
Sbjct: 413 GMDLTRAAELAEQIRELIFQREIKVN-GLHISITASIGVAEHQAQEPAEDLIKRADLALY 471

Query: 246 VAKKSGRNRVV 256
            AK++GRN+VV
Sbjct: 472 QAKEAGRNQVV 482


>gi|168820670|ref|ZP_02832670.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205342731|gb|EDZ29495.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
          Length = 353

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 30/267 (11%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGL-------TPFYGLEYILVE---- 67
           + S+  + F++++ + F+  ++ ++ +  +   Y  L        P + L  +L      
Sbjct: 87  MWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLW-LTALLASVQLN 145

Query: 68  ---NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDCLSGLLN 114
              N+  +++ +T++ +L Y   I      E ++ Y        R+  ++  D L+G  N
Sbjct: 146 QYVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTAN 205

Query: 115 HSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM- 170
             +  S LG      E  +++  D+DYFK  ND++GH  GD  +A ++  +     TP  
Sbjct: 206 RRSMESFLGDALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVACVVKRSIRTPAD 265

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCH 229
            V R GGEEF      SS  EAA++A  ++  + E +  + +S  S  +T+S GI     
Sbjct: 266 LVARYGGEEFVVVLPSSSLNEAALVAQRIQTNLRETALPHAASAVSETVTVSMGITLSTA 325

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV 256
            + ++ II RAD+ALY AK+ GRNR V
Sbjct: 326 GDTVTGIIARADEALYRAKQQGRNRWV 352


>gi|268610612|ref|ZP_06144339.1| diguanylate cyclase with PAS/PAC sensor [Ruminococcus flavefaciens
           FD-1]
          Length = 434

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 88/182 (48%), Gaps = 28/182 (15%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDN 145
           L  +  +   L+  D L+ + NH    + + +  EK       ++I+  DIDYFKQ+ND 
Sbjct: 264 LMSTLKKYEDLALKDSLTEVYNHGRMETEISNALEKHKKCRKNIAIMILDIDYFKQVNDK 323

Query: 146 FGHPVGDKVIA--------FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           FGH VGD  +         F  D   V        GR GGEEF A    SS+ EA  +AN
Sbjct: 324 FGHAVGDTTLKEFAHIIKEFCKDHNAV-------TGRWGGEEFVAVFYDSSQSEAEDMAN 376

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN--RV 255
           +LRK +E+           HIT S GI      + I+T   R D ALY AK SGRN  RV
Sbjct: 377 ELRKKVEDFLFTAVE----HITCSIGITMLKPDDTINTAFERMDSALYWAKSSGRNYVRV 432

Query: 256 VC 257
           +C
Sbjct: 433 IC 434


>gi|126172532|ref|YP_001048681.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|304411775|ref|ZP_07393387.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|307306173|ref|ZP_07585918.1| diguanylate cyclase [Shewanella baltica BA175]
 gi|125995737|gb|ABN59812.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|304349963|gb|EFM14369.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|306911046|gb|EFN41473.1| diguanylate cyclase [Shewanella baltica BA175]
          Length = 486

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 102/191 (53%), Gaps = 13/191 (6%)

Query: 74  ISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEK---- 128
           +S+ ++L + +IS   L      Y R +  ++  D L+G  N   F        +K    
Sbjct: 297 LSLMVTLGILFISNMTLGR----YQRKLEVMASTDKLTGAANRQVFDEYFRQALDKAKLA 352

Query: 129 ---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              +SI+  DID+FK++ND++GH +GD V+  +++ L         + R GGEEF     
Sbjct: 353 QSPISILLLDIDHFKKVNDSYGHGIGDLVLKTMTNMLRGALQQQDILCRWGGEEFLILLP 412

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
           G     AA LA  +R++I   +I ++ G  I IT S G+AE   +EP   +I RAD ALY
Sbjct: 413 GMDLTRAAELAEQIRELIFQREIKVN-GLHISITASIGVAEHQAQEPAEDLIKRADLALY 471

Query: 246 VAKKSGRNRVV 256
            AK++GRN+VV
Sbjct: 472 QAKEAGRNQVV 482


>gi|94498893|ref|ZP_01305431.1| diguanylate cyclase (GGDEF domain) [Oceanobacter sp. RED65]
 gi|94428525|gb|EAT13497.1| diguanylate cyclase (GGDEF domain) [Oceanobacter sp. RED65]
          Length = 564

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 95/185 (51%), Gaps = 14/185 (7%)

Query: 81  LLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLS 130
           L G + G + K   EL      +  LS  D L+G+ N           IS    Y    S
Sbjct: 381 LSGELEGKVAKRTAELEQKNEELRLLSSTDRLTGVYNRMKLEEQIQHEISRAQRYKLDYS 440

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           IV  D+DYFK +ND+FGH VGD+V+   + +L         VGR GGEEF  +   ++  
Sbjct: 441 IVMLDVDYFKNVNDSFGHQVGDRVLKMFAVELQNNVRESDVVGRWGGEEFIISCSCTNAD 500

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
            A  LA  LR+IIE    ++  G  I  T S G+++   ++ + ++I RAD ALY +K+ 
Sbjct: 501 NAFSLAEKLREIIE----HLDFGSGIACTASFGVSQYQLEDSLESLISRADNALYESKRM 556

Query: 251 GRNRV 255
           GRN+V
Sbjct: 557 GRNKV 561


>gi|148255939|ref|YP_001240524.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1]
 gi|146408112|gb|ABQ36618.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1]
          Length = 409

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 99/196 (50%), Gaps = 14/196 (7%)

Query: 77  TISLLLGYISGSILKELFISYNRI----SQLSRIDCLSGLLNHSAF-------ISSLGSY 125
           +I L+L Y  G++     +   RI     + +  D L+GLLN   F       I+     
Sbjct: 187 SIELVL-YAVGTVFVIFMLVSERIVSAHKRAATTDPLTGLLNRRGFADACAQLIAREARE 245

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              +S++ FDID+FK IND FGH  GD V+   +D +V         GR+GGEEF AA L
Sbjct: 246 QRPVSVLIFDIDHFKSINDRFGHAEGDTVLKLFADVVVNNLRLTDLSGRIGGEEF-AALL 304

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
             S +EA + A  +R+    S +     P +  T+S G+A       +  ++  AD ALY
Sbjct: 305 PCSIEEAMVAAERVREAFAASGVVCEEKP-VDTTVSIGVAGGPAGTELDVLLAAADTALY 363

Query: 246 VAKKSGRNRVVCFSDI 261
            AK+SGRNRV   S++
Sbjct: 364 KAKRSGRNRVEAASEL 379


>gi|109900134|ref|YP_663389.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109702415|gb|ABG42335.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
          Length = 316

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 104/203 (51%), Gaps = 24/203 (11%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-S 124
           VE + +V+  +T       +S   + EL    + + +LSRID L+G+ N   +       
Sbjct: 124 VEQVCIVVYDVTDQA----VSKQAVDEL---NSELQRLSRIDGLTGIFNRRYWEEQFSRE 176

Query: 125 YNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           +   L      S++  DID FK+INDN+GHP GD+VI  L+  +  V       GR GGE
Sbjct: 177 FKRNLRKPSQSSVIMLDIDNFKKINDNYGHPAGDEVIRQLAKLIEDVTRETDICGRYGGE 236

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPI 233
           EF      ++ Q   +LA  +R+ +EN +I      +I  T+S GIA+       H + +
Sbjct: 237 EFTILLPDTASQNVMVLAQRIRETVENLKIEYEQQ-TISFTVSLGIAQFSPVFEQHIQWL 295

Query: 234 STIIYRADQALYVAKKSGRNRVV 256
            +    AD+ALY AK SGRNRVV
Sbjct: 296 ES----ADKALYQAKISGRNRVV 314


>gi|227891015|ref|ZP_04008820.1| diguanylate cyclase [Lactobacillus salivarius ATCC 11741]
 gi|227867424|gb|EEJ74845.1| diguanylate cyclase [Lactobacillus salivarius ATCC 11741]
          Length = 310

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 12/205 (5%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDC----LSGLLNHSAFISSLGSYNEK 128
           II +T+  LL +   ++            +++R D     L+ LLN+ +F S +   ++K
Sbjct: 97  IIDVTLGTLLMFAVANVYVNFLTKQYEELRMARYDVSHDGLTNLLNYDSFHSHMNELSQK 156

Query: 129 LS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV----FGTPMFVGRLGGEEF 180
            S    I   DID FK+ ND +GH  G+ V+ + + +L       FG    V R GGEEF
Sbjct: 157 SSRHQIICILDIDDFKKFNDTYGHLEGNDVLVYFTKRLFAEVKAHFGELASVYRFGGEEF 216

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
             +  G + ++   + + L + +       ++G  I +T S GIA  C K+ I T++  A
Sbjct: 217 CVSVHGVTVEDCLEMTDKLAEELRTKDYVTATGDKITVTFSGGIALGCDKKDIKTVLREA 276

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D+ALY +K+  +  V C  D+E  +
Sbjct: 277 DKALYYSKRHKKGSVTCAKDLEKKS 301


>gi|160873406|ref|YP_001552722.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160858928|gb|ABX47462.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|315265635|gb|ADT92488.1| diguanylate cyclase [Shewanella baltica OS678]
          Length = 486

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 102/191 (53%), Gaps = 13/191 (6%)

Query: 74  ISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEK---- 128
           +S+ ++L + +IS   L      Y R +  ++  D L+G  N   F        +K    
Sbjct: 297 LSLMVTLGILFISNMTLGR----YQRKLEVMASTDKLTGAANRQVFDEYFRQALDKAKLA 352

Query: 129 ---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              +SI+  DID+FK++ND++GH +GD V+  +++ L         + R GGEEF     
Sbjct: 353 QSPISILLLDIDHFKKVNDSYGHGIGDLVLKTMTNMLRGALQQEDILCRWGGEEFLILLP 412

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
           G     AA LA  +R++I   +I ++ G  I IT S G+AE   +EP   +I RAD ALY
Sbjct: 413 GMDLTRAAELAEQIRELIFQREIKVN-GLHISITASIGVAEHQAQEPAEDLIKRADLALY 471

Query: 246 VAKKSGRNRVV 256
            AK++GRN+VV
Sbjct: 472 QAKEAGRNQVV 482


>gi|224367590|ref|YP_002601753.1| putative diguanylate cyclase (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223690306|gb|ACN13589.1| putative diguanylate cyclase (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 354

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 107/209 (51%), Gaps = 17/209 (8%)

Query: 64  ILVENLSLVIISITISLLLGY---ISGSILKELFISYNRISQLSRI------DCLSGLLN 114
           ++ EN    I  +    LL Y   I   ILK   I+ +R   ++R+      D L+G  N
Sbjct: 130 LIEENCRAKIYMLPNQTLLNYHDEIVNIILKSTGIAISRQMNIARLTDAASLDPLTGCYN 189

Query: 115 HSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
              F       +S    + + LSI  FDID+FK++ND  GHP GD+V+  +S  +     
Sbjct: 190 RREFQNQIQRSVSDATRHKKPLSIFMFDIDHFKRVNDTHGHPAGDEVLKEISRLVADNIR 249

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
               + R GGEEF A    +++ +A  LA+ LR  I++ +I   SG +I +T S GIAE 
Sbjct: 250 RGDTLARYGGEEFIAILPETAKHKAIELADRLRLKIQSKEIKTDSG-NIKVTASFGIAEL 308

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVV 256
                 S ++  AD+ LY +K SGRNRV+
Sbjct: 309 HPHADSSRLVKDADEMLYKSKLSGRNRVM 337


>gi|297569923|ref|YP_003691267.1| response regulator receiver modulated diguanylate cyclase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925838|gb|ADH86648.1| response regulator receiver modulated diguanylate cyclase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 467

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 104/213 (48%), Gaps = 15/213 (7%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLS 110
           +++  TPF G          +V I   IS +   +     K L  S  R  +LS ID L+
Sbjct: 261 YHVLATPFRGPAG------DMVGIVKHISDVTSRVRAE--KALQESEQRYKELSIIDELT 312

Query: 111 GLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           GL N   F  +L         Y   LS++  D+D FK  ND +GHP GD+V+A + + L 
Sbjct: 313 GLYNKRYFNKNLIPEVERARRYGNVLSLLMMDVDNFKHFNDTYGHPQGDRVLAAMGELLR 372

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                     R+GGEEFA     ++ + A  LA  LR+     + + + G ++  T+S G
Sbjct: 373 NTVRLNDLACRIGGEEFAVILPETTGENALGLAERLRRKFAELEFHPTEGVAVQKTMSIG 432

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +AE    E   +++ RAD  LY AK++GRNR +
Sbjct: 433 VAEFETDETPESLLARADSNLYAAKEAGRNRCI 465


>gi|33602090|ref|NP_889650.1| hypothetical protein BB3114 [Bordetella bronchiseptica RB50]
 gi|33576528|emb|CAE33606.1| putative membrane protein [Bordetella bronchiseptica RB50]
          Length = 475

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 91/168 (54%), Gaps = 10/168 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSY-NEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++L+ ID L+   N +         I+ L  + ++ L++V  D+D+FKQ+ND  GH VG
Sbjct: 307 LTRLATIDSLTDCWNRAEILKILRQEITRLRQHPDQPLAVVMLDLDHFKQLNDLHGHLVG 366

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D  + + SDQL        FVGR+GGEEF A   G     A  +A+ LR  + N     +
Sbjct: 367 DAALRYFSDQLRSNLRGTDFVGRIGGEEFLALLPGCDGDAALAMADRLRAALRNDPFT-T 425

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            G +  +++S GIA        +S ++ RAD ALY AK+ GR+R V +
Sbjct: 426 EGQAAPLSVSVGIAFATPEDTAVSDVMRRADTALYEAKRRGRDRAVVY 473


>gi|39935836|ref|NP_948112.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009]
 gi|192291484|ref|YP_001992089.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
 gi|39649690|emb|CAE28211.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris
           CGA009]
 gi|192285233|gb|ACF01614.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
          Length = 411

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 11/176 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
           ++ E  +S ++ +  + +D L+G+LN   F  +     E+       +S + FDID+FK 
Sbjct: 205 LVSERSVSLHKTA--ASLDPLTGMLNRRGFSEACARMIEREAMAGRPVSALIFDIDHFKS 262

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGHP GD+V+   +  +          GR+GGEEF AA L     EA   A+ +R+
Sbjct: 263 INDRFGHPAGDEVLKLFAAIVTNSLRISDLSGRIGGEEF-AALLPCPIDEAVTAADRVRE 321

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +N  I +   P +  T+S G+A       +  ++  AD ALY AK+ GRNRVV 
Sbjct: 322 AFQNCGIEVDDAP-VATTVSIGVAGGPAAVELEVLLAAADTALYQAKRGGRNRVVA 376


>gi|158424036|ref|YP_001525328.1| response regulator [Azorhizobium caulinodans ORS 571]
 gi|158330925|dbj|BAF88410.1| response regulator [Azorhizobium caulinodans ORS 571]
          Length = 367

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 6/176 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           + L  +   + +L+  D L+GLLN  AF      L  +    S++  DID+FKQ+ND +G
Sbjct: 174 ERLNQARRELVRLATRDGLTGLLNRRAFFIQAEDLLRHGIVASVILLDIDHFKQVNDTYG 233

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  ++  +    G      R+GGEEFA    G +E +A   A  LR  I ++ 
Sbjct: 234 HDGGDVVLTAVARAMSAYAGR---AARVGGEEFAILLPGVTESDAYEEAERLRWRIADTA 290

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + +  G +I +T S G+AE    +     + RAD ALY AK  GRNR V   ++ +
Sbjct: 291 VTLRDGRTISVTASLGVAEHATDDNADEWMKRADIALYAAKTGGRNRTVMGEEVSD 346


>gi|255918034|pdb|3IGN|A Chain A, Crystal Structure Of The Ggdef Domain From Marinobacter
           Aquaeolei Diguanylate Cyclase Complexed With C-Di-Gmp -
           Northeast Structural Genomics Consortium Target Mqr89a
          Length = 177

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 91/166 (54%), Gaps = 9/166 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++++LS  D L+GLLN   + + + +       Y +  S+V FDID+FK +ND +GH  G
Sbjct: 3   QLAKLSXTDRLTGLLNRGTWENLVDAEYERFRRYGQATSLVXFDIDHFKPVNDTYGHLAG 62

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+VI   +D            GR GGEEF      +  + A ++   +R+ IE S ++ S
Sbjct: 63  DEVIRHTADVTRNNIRQSDSAGRYGGEEFGIILPETDAESARVICERIREAIEKSTVSTS 122

Query: 212 SGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
           +G  I  T+S GIA+     E       +AD+ALY AK+SGRN+VV
Sbjct: 123 AG-DIQYTVSXGIAQLTETPENYXQWXQKADEALYKAKESGRNKVV 167


>gi|299537176|ref|ZP_07050479.1| response regulator receiver modulated diguanylate cyclase
           [Lysinibacillus fusiformis ZC1]
 gi|298727417|gb|EFI67989.1| response regulator receiver modulated diguanylate cyclase
           [Lysinibacillus fusiformis ZC1]
          Length = 543

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 99/196 (50%), Gaps = 18/196 (9%)

Query: 76  ITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHS-------AFISSLGSYNE 127
           I   LL+ Y+S  +      +Y R + Q   ID L+ + N          FI       E
Sbjct: 216 IDEELLVAYVSNRL------AYKRELEQAIVIDELTQIYNRKFMESQMKLFIKHHQQNKE 269

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
             SI   D+DYFK++ND +GH VGD+V+   +  +  + G      R GGEEF      +
Sbjct: 270 HFSIAMIDLDYFKKVNDTYGHLVGDEVLKGFASLVKELKGAEEIACRFGGEEFVILMPRT 329

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALY 245
           +++EA I    LR  +E  +I  ++G S H+T S+GIAE       P   ++  ADQALY
Sbjct: 330 TKKEAFIFIEKLRTSME-KKIFTANGTSFHVTFSSGIAEATSTNLHP-KKMLEEADQALY 387

Query: 246 VAKKSGRNRVVCFSDI 261
            AK+ GRN+ + F +I
Sbjct: 388 TAKQLGRNQTIIFDNI 403


>gi|134291815|ref|YP_001115584.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
 gi|134135004|gb|ABO59329.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
          Length = 506

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 93/175 (53%), Gaps = 12/175 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPVG 151
           ++ L+R D L+GL N  A  ++L    ++L        S++F D D+FKQ ND +GH  G
Sbjct: 328 LTDLTRTDPLTGLHNRRALDAALADEWQRLQRGNDGSLSMLFIDADHFKQYNDRYGHAQG 387

Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209
           D  + FL++ +            R GGEEF A    + E  AA +A  +R  +E + ++ 
Sbjct: 388 DTALRFLAECIRAHTRRRGDLAARYGGEEFVAVLPDTDESGAATVAEAIRGAVERNCLDG 447

Query: 210 -ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             ++ P+  ++I    A R H + +  + + AD ALY AK+ GRNR VC +D ++
Sbjct: 448 FDATMPAFTVSIGCATAHRGHPKSVQALSHHADLALYTAKRQGRNR-VCRADAKS 501


>gi|33596250|ref|NP_883893.1| hypothetical protein BPP1614 [Bordetella parapertussis 12822]
 gi|33573253|emb|CAE36915.1| putative membrane protein [Bordetella parapertussis]
          Length = 475

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 91/168 (54%), Gaps = 10/168 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSY-NEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++L+ ID L+   N +         I+ L  + ++ L++V  D+D+FKQ+ND  GH VG
Sbjct: 307 LTRLATIDSLTDCWNRAEILKILRQEITRLRQHPDQPLAVVMLDLDHFKQLNDLHGHLVG 366

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D  + + SDQL        FVGR+GGEEF A   G     A  +A+ LR  + N     +
Sbjct: 367 DAALRYFSDQLRSNLRGTDFVGRIGGEEFLALLPGCDGDAALAMADRLRAALRNDPFT-T 425

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            G +  +++S GIA        +S ++ RAD ALY AK+ GR+R V +
Sbjct: 426 EGQAAPLSVSVGIAFATPEDTAVSDVMRRADTALYEAKRRGRDRAVVY 473


>gi|169831989|ref|YP_001717971.1| response regulator receiver modulated diguanylate cyclase
           [Candidatus Desulforudis audaxviator MP104C]
 gi|169638833|gb|ACA60339.1| response regulator receiver modulated diguanylate cyclase
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 314

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 9/178 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           ++L  +  +I+ L+  D L+GL N    +  L +           + ++F D+D+FK+IN
Sbjct: 125 EKLKEANKKIAALASTDALTGLPNRRVLLEHLEALVARGIREGRPVGVIFMDLDHFKRIN 184

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D + H  GD V+  ++ +L  V     F+GR GGEEF     G     A  +A   R+ I
Sbjct: 185 DEYSHLAGDTVLQDVAKKLRAVKRVYDFLGRYGGEEFLILVEGVDIVTAGAIAERFRQSI 244

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFS 259
           +++ + + SG S+ +T S G+       P  +  +I  ADQALY AK  GR+RV CF 
Sbjct: 245 KSTPVKLDSGVSLRVTASFGVTALNPAAPQSVDRLIAEADQALYSAKAQGRDRVCCFG 302


>gi|146341144|ref|YP_001206192.1| putative diguanylate cyclase [Bradyrhizobium sp. ORS278]
 gi|146193950|emb|CAL77967.1| putative diguanylate cyclase (GGDEF) [Bradyrhizobium sp. ORS278]
          Length = 408

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 96/180 (53%), Gaps = 11/180 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
           ++ E  +S ++  + +  D L+GLLN   F  +     E+       +S++ FDID+FK 
Sbjct: 204 LVSERIVSAHK--RAATTDPLTGLLNRRGFADACAQLIEREARAQQPVSVLIFDIDHFKS 261

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH  GD+V+   +D +V         GR+GGEEF AA L  S +EA + A  +R+
Sbjct: 262 INDRFGHAEGDEVLKIFADVVVNNLRLTDLSGRIGGEEF-AALLPCSIEEAMVAAERVRE 320

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
               S +     P +  T+S G+A       +  ++  AD ALY AK+SGRNRV   +++
Sbjct: 321 AFAASGVVCEEKP-VDTTVSIGVAGGPAGTELDVLLAAADTALYKAKRSGRNRVEASAEL 379


>gi|291279263|ref|YP_003496098.1| hypothetical protein DEFDS_0866 [Deferribacter desulfuricans SSM1]
 gi|290753965|dbj|BAI80342.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 538

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 87/173 (50%), Gaps = 11/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           KEL     ++ +LS  DCL+ L N       L +       YN+  SI+ FDID FK IN
Sbjct: 369 KELEKINQKLQKLSITDCLTKLYNRGKIEKDLTNEYNKAIRYNDTFSIILFDIDNFKIIN 428

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH +GDK++  +++             R GGEEF      ++   A  LA  LRK I
Sbjct: 429 DTYGHQMGDKILIEIANLTKETIRNTDIAARWGGEEFLILCPKTNINSAFNLAERLRKKI 488

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E+   +I       ITIS GIAE      I  ++ +AD  LY AKK G+NRV+
Sbjct: 489 ESHDFSIDK----RITISGGIAEFKKGLTIDEMLKQADDNLYKAKKEGKNRVI 537


>gi|302342602|ref|YP_003807131.1| diguanylate cyclase [Desulfarculus baarsii DSM 2075]
 gi|301639215|gb|ADK84537.1| diguanylate cyclase [Desulfarculus baarsii DSM 2075]
          Length = 394

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 108/201 (53%), Gaps = 15/201 (7%)

Query: 68  NLSLVIISITISLLLGYI-----SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           N  ++I+++ + L   +I     S  + +E+  +  ++  L+  D L+GL+N   F+  +
Sbjct: 193 NAIVLIVAVLVELSWAWIFLVMNSQRLEQEITSAQEKLILLAASDPLTGLVNRRRFLE-M 251

Query: 123 GS--------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           G         Y   L+++  D+D+FK++ND+FGH  GD V+   +   + V   P  +GR
Sbjct: 252 GQAELERSLRYGRPLAVLVMDVDHFKRVNDSFGHATGDLVLRQTAQACLAVLREPDVLGR 311

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
           LGG+EFAA    ++ + A  LA  LR+ +   +++   G ++  ++S G+A     +   
Sbjct: 312 LGGDEFAALLPETTLEGALALAERLRQAVGGLRLDY-RGQAVRTSLSIGVAAMKPDDTPH 370

Query: 235 TIIYRADQALYVAKKSGRNRV 255
            +I RAD ALY AK  GR++V
Sbjct: 371 GLIERADAALYKAKHQGRDQV 391


>gi|224373505|ref|YP_002607877.1| diguanylate cyclase [Nautilia profundicola AmH]
 gi|223589658|gb|ACM93394.1| diguanylate cyclase [Nautilia profundicola AmH]
          Length = 512

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 100/211 (47%), Gaps = 22/211 (10%)

Query: 70  SLVIISITISLLLGYISGSILKE----------LFISYNRISQLSR---IDCLSGLLNHS 116
            L+ I+ +I   L + S  + KE          +     ++ QLS+    D L+ + N  
Sbjct: 301 KLLTIATSIDKELNHFSEEMRKEDEEIEKLRQKVHFLEGKLKQLSKEVKTDFLTDIANKK 360

Query: 117 AFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
           A I  L         Y    S+VFFDID+FK IND +GH  GD ++  L           
Sbjct: 361 AVIDELKKQESIYNRYGTNYSVVFFDIDHFKNINDTYGHDAGDVILKSLGLLFKRYARDI 420

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
             +GR GGEEF A    + ++ A   A  LR+IIE ++  +     I +T+S G+A R  
Sbjct: 421 DMIGRFGGEEFVAILPNTDKEGAYKFAEKLRQIIEKTKF-MYKNTRIDVTVSGGVASRNE 479

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                  +  AD+ LY+AKK+GRN+ VC  D
Sbjct: 480 TNSSDETLKLADKRLYLAKKTGRNK-VCADD 509


>gi|317128843|ref|YP_004095125.1| diguanylate cyclase [Bacillus cellulosilyticus DSM 2522]
 gi|315473791|gb|ADU30394.1| diguanylate cyclase [Bacillus cellulosilyticus DSM 2522]
          Length = 339

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 95/165 (57%), Gaps = 7/165 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPV 150
           FI    I + +  D L+G+ N     S L S     ++L+++FFDID+FK+IND  GH +
Sbjct: 175 FIESEVIEKYAFKDFLTGINNRRMMYSYLKSEIKNKKELTVIFFDIDHFKKINDQHGHFI 234

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+++  +++ ++         GR GGEEF   + G+  +    LA ++RK I++     
Sbjct: 235 GDEILKEVTNVVLTRLTKNETFGRWGGEEFIIVSKGTGLENTITLAEEIRKTIKDH---- 290

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S    + +T S G+ +  + + +++ +  AD+ALY+AK++GRN+V
Sbjct: 291 SFTNKLQVTCSFGVKQFQYNDTLNSFLSEADKALYLAKENGRNKV 335


>gi|74318832|ref|YP_316572.1| PAS/PAC sensor-containing diguanylate cyclase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74058327|gb|AAZ98767.1| Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           domain [Thiobacillus denitrificans ATCC 25259]
          Length = 321

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 95/185 (51%), Gaps = 20/185 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           EL   +  +  L+  D L+GL N  AF    G         +EK S++  D+D+FKQIND
Sbjct: 131 ELLRLHAELELLANHDGLTGLYNWRAFYEHAGQLLTTAHRRHEKASLLILDLDHFKQIND 190

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD+V+   +  L         V R GGEEF  A  G SE E+ + A  LR  + 
Sbjct: 191 RFGHAEGDRVLQAAAAALKASARQNDIVARHGGEEFVIAGFGLSEAESLVAAERLRAAVA 250

Query: 205 NSQINISSGPSIHITISAGIA------ERCHKEP--ISTIIYRADQALYVAKKSGRNRVV 256
           + + N+    +  +T S G+A         H+ P  ++ ++ RADQALY AK+SGRNR+ 
Sbjct: 251 SIE-NL----ACRVTTSVGVATFVPDPSSRHEPPTLLADLLDRADQALYHAKRSGRNRIC 305

Query: 257 CFSDI 261
            F  +
Sbjct: 306 HFDQL 310


>gi|163761146|ref|ZP_02168223.1| two component response regulator [Hoeflea phototrophica DFL-43]
 gi|162281697|gb|EDQ31991.1| two component response regulator [Hoeflea phototrophica DFL-43]
          Length = 431

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 88/166 (53%), Gaps = 8/166 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAF---ISSLGSYNE----KLSIVFFDIDYFKQINDNFGHPV 150
           +R+   +  D L+ L N   F   +S L   ++    + ++   DID+FK++ND +GH  
Sbjct: 257 SRLRHHAERDQLTNLPNRRYFFEAVSKLMCEDQAKGLQSAVALLDIDFFKKVNDTYGHEA 316

Query: 151 GDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD+ +  ++  L    G TP    RLGGEEFA    G   Q A      +R  IE+++I 
Sbjct: 317 GDETLRAIARSLKTALGRTPHMAARLGGEEFAIYLRGLEGQGAHDFCEAIRSSIEDTRIE 376

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + +G  I +T S G+ +    EP+   ++ ADQ LY+AK  GRNRV
Sbjct: 377 LRNGKIIAVTTSVGLVDIHANEPVDNQLHAADQLLYMAKAGGRNRV 422


>gi|90419194|ref|ZP_01227104.1| diguanylate cyclase family [Aurantimonas manganoxydans SI85-9A1]
 gi|90336131|gb|EAS49872.1| diguanylate cyclase family [Aurantimonas manganoxydans SI85-9A1]
          Length = 273

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 122/249 (48%), Gaps = 13/249 (5%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL 69
           S+W   E    S+      +   +   IF+  +     +F    G   ++ ++   +E  
Sbjct: 21  SVWRLAEAEERSWLDTALAVALCLVSGIFLVRLPLFPMLF---DGTASYHAVKTSGLETT 77

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-SYNEK 128
            L +  +   L++  +   I+  +   Y R S+    D ++GLLN   F  SL  +    
Sbjct: 78  LLTLSGLVTPLVVFLLLARIISGVITDYRRRSER---DAMTGLLNRRGFDQSLTRTLKRG 134

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            +++  DID+FKQ+ND++GH VGD +I    D   ++  +    GR+GGEEFA      S
Sbjct: 135 GAVILCDIDHFKQVNDSYGHAVGDTIIRAFGD---LIGRSGYRAGRIGGEEFALILPDCS 191

Query: 189 EQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
            ++AA +A  LR    +++   +++G    I+ S GIA     + +  ++  AD+ALY A
Sbjct: 192 ARQAARVAETLRLTFYHTEHEALAAGH--RISASFGIAGFAPADTMDAVLLAADRALYRA 249

Query: 248 KKSGRNRVV 256
           K +GRNRVV
Sbjct: 250 KDNGRNRVV 258


>gi|170697320|ref|ZP_02888413.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
 gi|170137774|gb|EDT06009.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
          Length = 506

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 92/174 (52%), Gaps = 12/174 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPVG 151
           ++ L+R D L+GL N  A  ++L    E+L        S++F D D+FKQ ND +GH  G
Sbjct: 328 LTDLTRTDPLTGLHNRRALDAALADEWERLQRGSDGSLSVLFIDADHFKQYNDRYGHAQG 387

Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209
           D  + FL++ +            R GGEEF A    + E+ A  +A  +R  +E ++++ 
Sbjct: 388 DTALRFLAECIRAHTRRRGDLAARYGGEEFVAVLPDTDERGAQQVAEAIRLAVERNRLDG 447

Query: 210 -ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             ++ P+  ++I      R     +  + ++AD ALY AK+ GRNR VC +D+E
Sbjct: 448 FDATIPAFTVSIGCATGHRARPPSVHALTHQADLALYAAKRQGRNR-VCVADVE 500


>gi|89092154|ref|ZP_01165109.1| GGDEF family protein [Oceanospirillum sp. MED92]
 gi|89083889|gb|EAR63106.1| GGDEF family protein [Oceanospirillum sp. MED92]
          Length = 314

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 83/167 (49%), Gaps = 9/167 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  L+  D ++G  N   F  S+         Y    S+ F DIDYFK++ND FGH V
Sbjct: 147 QRLKDLAEKDPMTGAYNRRFFRESIDQHYATFKRYGTTYSLAFIDIDYFKKVNDQFGHDV 206

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VI  L   +     T   + R GGEEF       +  EA ++A  LR  IE +    
Sbjct: 207 GDGVICHLVTHIQEQLRTTDLLSRFGGEEFVVLFPHINLDEACLVAERLRATIEMTPYK- 265

Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S    +  T+S GI+E R   E +  I+ RAD ALY +K SGRN+V 
Sbjct: 266 SINHKVPFTVSIGISEVRAEDESVEDILKRADSALYQSKSSGRNKVT 312


>gi|34495546|ref|NP_899761.1| two-component response regulator [Chromobacterium violaceum ATCC
           12472]
 gi|34330253|gb|AAQ57770.2| probable two-component response regulator [Chromobacterium
           violaceum ATCC 12472]
          Length = 405

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 83/158 (52%), Gaps = 8/158 (5%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLNHS     L S         + LS+   D+DYFKQ+NDN+GH VGD+V+  L+
Sbjct: 246 DSLTGLLNHSHLHGQLDSAILRARRVGQPLSLAMLDLDYFKQVNDNYGHQVGDEVLLTLA 305

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         VGR GGEEFA    G+   +A  +   LR+     +  +    +   T
Sbjct: 306 RFLKERLRRTDLVGRYGGEEFAIVLGGTPADKAHGMLETLRQDFGLLEQQVGER-TFRQT 364

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            SAGI+        + ++ +AD+ LY AK +GRNRVVC
Sbjct: 365 FSAGISSLASAATSTELVQQADEMLYRAKAAGRNRVVC 402


>gi|304310664|ref|YP_003810262.1| hypothetical protein HDN1F_10220 [gamma proteobacterium HdN1]
 gi|301796397|emb|CBL44605.1| conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 327

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 86/170 (50%), Gaps = 8/170 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
           + Y  + + S  D L+G  N  +  + L         YN+ LS++  D+DYFK+IND++G
Sbjct: 138 LRYQEVVRSSLTDALTGAGNRFSLDNVLHRETDLASRYNQPLSVLMLDLDYFKRINDSYG 197

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  ++  L           R GGEEF      +  + A ++A  LR  I N  
Sbjct: 198 HAAGDYVLKAVAKTLRATSRGVDMTFRYGGEEFVVLLNKTHLEGATVIAERLRNTIANLS 257

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + I  G  I +TIS G+A    +E     + RAD+ALY AK SGRNRV  
Sbjct: 258 V-IHDGKEIPVTISVGVAALQKQETTQQFMERADKALYRAKNSGRNRVAV 306


>gi|149374451|ref|ZP_01892225.1| diguanylate cyclase [Marinobacter algicola DG893]
 gi|149361154|gb|EDM49604.1| diguanylate cyclase [Marinobacter algicola DG893]
          Length = 357

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 129/253 (50%), Gaps = 28/253 (11%)

Query: 25  HTFMIYF--SIFFSIFI-ATVIFIANIFLFYIGL-------TPFY-----GLEYILVENL 69
           H +++ F  ++F S+ + A VI +  ++ +YI L        P        L  + + NL
Sbjct: 96  HYYLLMFIPALFVSMALRAAVICLVALWSYYIALYLMMWTIEPLQPIAPGALMAVYLFNL 155

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN--HSAFISS--LGSY 125
           S+V        +  Y+S   L  +  +  ++ +++  D L+GL N  H  +++   L  +
Sbjct: 156 SVVFA------MFSYLSFFYLTMVTTANRKLRRMATTDSLTGLFNRRHMTYLAEKELARF 209

Query: 126 NEKLSIVFF---DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                 V F   D+D+FK IND  GH +GD+V+  ++  +     T   + R GGEEF A
Sbjct: 210 ERTGRPVAFLVLDVDHFKAINDRHGHEIGDRVLIEVAKIIEAQLRTQDLISRWGGEEFLA 269

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
           A   +S   A   A  +RK + +     ++G +I +TISAG++E    + +++ I RAD+
Sbjct: 270 ALPDTSLDSAQASAERVRKALLDHDWLATTGEAIGLTISAGVSEYRRGDTLNSAISRADR 329

Query: 243 ALYVAKKSGRNRV 255
           ALY +K+ GRNRV
Sbjct: 330 ALYRSKEGGRNRV 342


>gi|95931099|ref|ZP_01313825.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95132844|gb|EAT14517.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 1174

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 66/172 (38%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 91   KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
            +EL      +++LS  D L+GLLN  A        I      N  +S++  D+DYFK+IN
Sbjct: 851  RELEEKNQELNRLSMTDKLTGLLNRHAIEPIIDNEIGRHKRANNPVSLLIVDLDYFKKIN 910

Query: 144  DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            DNFGH  GDKV+  +S  L+ V  +   + R GGEEF   A  +   +A  LA  +R+ I
Sbjct: 911  DNFGHAAGDKVLKEVSTALIAVTRSSDSLARWGGEEFLLVAGDTRILKATALAEKIRQTI 970

Query: 204  ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               QI+      I +T S G+AE    E       R D+ALY AK SGRN V
Sbjct: 971  AGLQID-----DIPVTASIGVAEFNTDETFHQWYERCDKALYQAKDSGRNCV 1017


>gi|291614023|ref|YP_003524180.1| periplasmic/7TM domain sensor diguanylate cyclase [Sideroxydans
           lithotrophicus ES-1]
 gi|291584135|gb|ADE11793.1| periplasmic/7TM domain sensor diguanylate cyclase [Sideroxydans
           lithotrophicus ES-1]
          Length = 570

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 114/238 (47%), Gaps = 18/238 (7%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
           F+ FF +    V  +A       G  PF    +   E   LVI +  ++L L     + +
Sbjct: 344 FATFFGMLGVGVTALA-----VWGKIPFRPYTFHAAE-FGLVIEATLLALGLS----NWM 393

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIN 143
           +E   +     Q++R+D L+ L N  AF+       S+ G +   +S+V  DID+FK IN
Sbjct: 394 RENRDALYEAEQVARLDALTHLNNRRAFMELALPYASTAGRHERPMSLVMMDIDHFKSIN 453

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD V+  ++D L     T   V R GGEEF      +  ++A   A  LR+ I
Sbjct: 454 DQYGHQTGDLVLTAVADLLKNFSRTSDIVARWGGEEFILLLPETGLKQAINHAERLRQAI 513

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              +I +    SI +T S GIA          +I +AD  LY AK+SGRN+V C S +
Sbjct: 514 AEFRIPVGE-TSISLTASFGIAAHVANLSFDKMIEQADVQLYEAKRSGRNKVCCSSAV 570


>gi|254457279|ref|ZP_05070707.1| signal transduction response regulator-chey like receiver and ggdef
           domain [Campylobacterales bacterium GD 1]
 gi|207086071|gb|EDZ63355.1| signal transduction response regulator-chey like receiver and ggdef
           domain [Campylobacterales bacterium GD 1]
          Length = 534

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 119/235 (50%), Gaps = 29/235 (12%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLV--IISITISLLL------GYIS--GS 88
           I  ++F+ N+         FY  +  +++N+S+V  I+ + +SL +       YI+   S
Sbjct: 307 IGKILFVKNL--------NFYTDKLDMIKNISIVSGIVLLLLSLYMMRKIFNNYINIVNS 358

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
              +L I    + +L  +D L+ + N  +        +     YN +LS++ FDID FK 
Sbjct: 359 YQSKLEIKNRTLLKLVNVDHLTKIHNRKSIETILIKELKRAKRYNHELSLIIFDIDNFKN 418

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH +GDKV+  ++  +        + GR GGEEF   +  +S   A ++A  +R+
Sbjct: 419 INDTYGHNIGDKVLKSIAKVVANSIRESDYFGRWGGEEFIVISTETSMDNALLVAEKIRE 478

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            I  S  +        IT S G+AE   ++   +I++ AD ALY AK SG+NRV+
Sbjct: 479 SI--STYDFEEAEK--ITCSIGVAEYTSEDTHQSIVHNADTALYKAKHSGKNRVI 529


>gi|296133437|ref|YP_003640684.1| diguanylate cyclase [Thermincola sp. JR]
 gi|296032015|gb|ADG82783.1| diguanylate cyclase [Thermincola potens JR]
          Length = 364

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 92/186 (49%), Gaps = 16/186 (8%)

Query: 89  ILKELFISYNRIS-------QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           ++KEL  +Y ++S       +++  D L+ L N+  F+  L         YN+ LS++  
Sbjct: 174 LIKELQAAYRQLSAYNAQVEEMAIKDPLTELYNYRYFVGRLREEIQWAQKYNKPLSLILL 233

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DIDYFKQ ND +GHP GD  +   +            V R GGEEF      +S  EA +
Sbjct: 234 DIDYFKQFNDTYGHPAGDAALKKAAKIFQENIRDRDIVARYGGEEFFVLLPDTSVDEAYL 293

Query: 195 LANDLRKIIENSQINISSGPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGR 252
            A  +RK IE + I +    +   IT+SAG+A        +  ++   DQALY AKK GR
Sbjct: 294 CAERIRKAIEKTDIKVEEKKATAKITVSAGVAALSTGTRTVKDLLQVVDQALYQAKKLGR 353

Query: 253 NRVVCF 258
           N+   +
Sbjct: 354 NKTQIY 359


>gi|302671323|ref|YP_003831283.1| GGDEF domain-containing protein [Butyrivibrio proteoclasticus B316]
 gi|302395796|gb|ADL34701.1| GGDEF domain-containing protein [Butyrivibrio proteoclasticus B316]
          Length = 435

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 90/177 (50%), Gaps = 12/177 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           +KE   +  +  +L  +D L+GL+NH    + + +         E +S++  D+D FK+I
Sbjct: 263 VKERMETLKKYEELVMVDPLTGLINHGGIKTEIENAIDIYQNGGESISLMMIDLDNFKKI 322

Query: 143 NDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           NDN+GH VGD  +  L+D L          VGR GGEEF     G S  EA   A DLR+
Sbjct: 323 NDNYGHSVGDATLRTLADVLKGFAKDKNASVGRWGGEEFVTILSGVSHDEAVEYAEDLRR 382

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +  +      G + HIT S GI++    +    I  R D+A+Y +K +GRNRV   
Sbjct: 383 SVAEADF----GKAGHITCSVGISQLGDDDSFDDIFDRMDKAMYSSKIAGRNRVTVL 435


>gi|218888286|ref|YP_002437607.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218759240|gb|ACL10139.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 569

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 107/207 (51%), Gaps = 15/207 (7%)

Query: 69  LSLVIISITISLLLGYISGS--ILKELFISYNRISQLSRIDCLSGLLNH-------SAFI 119
           LS VI ++     L  I G+   L  L     RI++    D L+G  N        +A +
Sbjct: 348 LSAVIYTLHNHSQLRIIEGNNQALTRLNEELRRIAER---DHLTGCFNRRRLDEAMNAEL 404

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
           +        L++   D+D+FK +ND  GH VGD ++A +++ +      P  + R+GGEE
Sbjct: 405 ARSARSGHPLALAMLDLDHFKAVNDQHGHGVGDAMLAHVTEIIRNQLREPDLLARVGGEE 464

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIY 238
           FA     + E+EA  L   +R+ ++ + +  + GP I +T+SAG+AE R   EP    ++
Sbjct: 465 FALLLPDTGEREAVTLLERVRRKVQETPLPHADGP-IPMTVSAGVAESRPDIEP-GRWMH 522

Query: 239 RADQALYVAKKSGRNRVVCFSDIENNT 265
            AD ALY+AK+ GRNR V  + +   T
Sbjct: 523 VADAALYMAKRCGRNRTVRAAQVPEET 549


>gi|262373774|ref|ZP_06067052.1| GGDEF family protein [Acinetobacter junii SH205]
 gi|262311527|gb|EEY92613.1| GGDEF family protein [Acinetobacter junii SH205]
          Length = 396

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 133/282 (47%), Gaps = 31/282 (10%)

Query: 9   LSIWLCHEKNL-ESFSPHTFMIYFSI-------FFSIFIATVIFIANIFLFYIGLTPFYG 60
           +++ LCH   L  SFSP T + Y S+       F    I   +  A I + +      YG
Sbjct: 115 VTVLLCHTGYLIGSFSPATMVTYASVVGVGLILFDRRMIYCALIPATIAMLFCNFLSMYG 174

Query: 61  -LEYILVENL--------------SLVIISITISLLLGYISGSILKELFISYNRISQLSR 105
            L+Y  + N               S+    + I L   Y+   +L++       I  LSR
Sbjct: 175 ILQYAPIFNPEILNQAEMHPFWVGSMFFFLLPILLACLYLFEILLQQWRTRETAIQALSR 234

Query: 106 IDCLSGLLNHSAFISSLGSYNEKL----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +D L+ ++N  +  + L   N+++    S++  D+D+FK IND+FGH +GD+V+  ++  
Sbjct: 235 LDPLTNVMNRRSISNQLEKLNQQVDQLYSVILLDLDHFKNINDHFGHSLGDEVLVNVAKC 294

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L         +GR GGEEF      +S  +A  +A   R  I  SQ++  S      ++S
Sbjct: 295 LTENLRDQDMIGRFGGEEFIILLPNNSTTQAKSIAERCRIAI--SQLSFISEDHQEFSVS 352

Query: 222 A--GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           A  GI+   +      II +ADQALY  K +GRN+V  FS++
Sbjct: 353 ASFGISSSQNASESHLIISQADQALYAVKANGRNQVKIFSEL 394


>gi|307720283|ref|YP_003891423.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
 gi|306978376|gb|ADN08411.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
          Length = 604

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 85/159 (53%), Gaps = 12/159 (7%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+G+ N   F       I+    Y    S++  DID+FK+IND +GH VGDKV+   
Sbjct: 450 IDPLTGIYNRRYFERKISEEITRCERYEMVFSLIMLDIDFFKRINDTYGHDVGDKVLQSH 509

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           S  ++        + R+GGEEF      +++++A   A DLRK ++N Q        + I
Sbjct: 510 SALILENLRESDILCRVGGEEFMIILPQTTQEQAYYKAEDLRKKVQNEQ-----DMHLQI 564

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           T+S G+A+    +   T+  R D ALY AK+SGRN+V  
Sbjct: 565 TMSFGVAQFHKADTYETLYKRVDTALYKAKESGRNKVAV 603


>gi|209809645|ref|YP_002265184.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238]
 gi|208011208|emb|CAQ81639.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238]
          Length = 712

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 99/191 (51%), Gaps = 17/191 (8%)

Query: 79  SLLLGYIS---GSIL--KELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNE----- 127
            +LLG I    G++L  ++L   YN ++ QLS  D L+ L N     + L    +     
Sbjct: 524 KVLLGVIVAIIGALLYRQKLLKKYNTKLIQLSTYDSLTSLYNRRVIDTHLVKQQKLSLRT 583

Query: 128 --KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              LS++  DIDYFK+IND FGH  GD+VI  +S  L+    T   VGR GGEEF     
Sbjct: 584 DMPLSVIMCDIDYFKKINDTFGHIAGDEVIVNMSALLLNNIRTSDIVGRWGGEEFIIICP 643

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            +    A +LA  LRK IE     + +     IT+S GIA+         ++ +AD ALY
Sbjct: 644 NTHSSGAKVLAECLRKKIE----KMPATNEQTITMSFGIAQFNENLSYEELLIKADAALY 699

Query: 246 VAKKSGRNRVV 256
            AK+ GRN+VV
Sbjct: 700 AAKEQGRNKVV 710


>gi|323497745|ref|ZP_08102760.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
 gi|323317221|gb|EGA70217.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
          Length = 345

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 105/191 (54%), Gaps = 9/191 (4%)

Query: 74  ISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---- 128
           ++ +++ L  +++  IL+ +   S   + QL+  D L+G+ N  A + +   Y+++    
Sbjct: 148 VNFSLTFLCIWLTSHILEVKRKTSEASLGQLASRDSLTGVYNRHALVHNFKRYHDESNKV 207

Query: 129 -LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            LS++  D+DYFKQ+ND +GH VGDKV+   +  L+        V R+GGEEF  A    
Sbjct: 208 PLSLLILDLDYFKQVNDQYGHDVGDKVL-IETAALLDALSDEHLVYRIGGEEFCIALHDC 266

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
             Q A   A  +R  IE  + +     +I +T S G+ +  H + + +++  AD+ LY A
Sbjct: 267 DLQHARHKAELIRHTIERYEFS-GGEEAIKLTASIGVYQCHHFDSLESVLKEADKELYRA 325

Query: 248 KKSGRNRV-VC 257
           KK+GRN+V VC
Sbjct: 326 KKNGRNQVMVC 336


>gi|197295246|ref|YP_002153787.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
 gi|195944725|emb|CAR57329.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
          Length = 506

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 94/184 (51%), Gaps = 12/184 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQ 141
           L++ F     ++ L+R D L+GL N  A  ++L    E+L        S++F D D+FKQ
Sbjct: 318 LRDNFRKQTLLTDLTRTDPLTGLHNRRALDTALADEWERLQRGSGGSLSVLFIDADHFKQ 377

Query: 142 INDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND  GH +GD  + FL++ +            R GGEEF A    + E  AA +A+ +R
Sbjct: 378 YNDRHGHALGDTALRFLAECIRAHTRRRGDLAARYGGEEFVAVLPDTDENGAARVADAIR 437

Query: 201 KIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + +E ++++    + P   ++I    + R     +  + + AD ALY AK+ GRNR VC 
Sbjct: 438 REVERNRLDGFAETVPPFTVSIGCATSRRARHASVHALTHDADMALYRAKREGRNR-VCR 496

Query: 259 SDIE 262
           +  E
Sbjct: 497 AQAE 500


>gi|294140421|ref|YP_003556399.1| response regulator [Shewanella violacea DSS12]
 gi|293326890|dbj|BAJ01621.1| response regulator [Shewanella violacea DSS12]
          Length = 413

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 87/161 (54%), Gaps = 10/161 (6%)

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           + +D L+G+ N   F       I  +      L++   DID+FK++ND  GH VGD+V+ 
Sbjct: 253 ANLDYLTGVYNRRYFFGLFEEQIKQIKQKQGTLTVALLDIDFFKRVNDTHGHDVGDEVLV 312

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             S +L   FG    V R GGEEF  A  G +E++   L +  R  +E   I  S G  +
Sbjct: 313 EFSARLKHFFGQHFTVSRFGGEEFTVAFKGLNEEKVFALMDKFRSQLEMKPIATSKG-DM 371

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            IT+S GIA     + +  +I RAD+ALY AK+SGRN +VC
Sbjct: 372 FITVSTGIAG-LADDSLDELIQRADKALYDAKESGRN-LVC 410


>gi|224368288|ref|YP_002602451.1| two domain sensory box histidine kinase (PAS/PAC domain/GGDEF
           domain protein) [Desulfobacterium autotrophicum HRM2]
 gi|223691004|gb|ACN14287.1| two domain sensory box histidine kinase (PAS/PAC domain/GGDEF
           domain protein) [Desulfobacterium autotrophicum HRM2]
          Length = 440

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 88/165 (53%), Gaps = 8/165 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+G  N  +F++           YN  L++V  DID+FK+INDNFGH  GD
Sbjct: 274 LEKLATTDPLTGAKNRRSFLNLFEKEMKRSKRYNYTLALVMIDIDHFKKINDNFGHETGD 333

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           K++  L  +   V        R GGEEF      +   +A+  A  LR  +  S++  + 
Sbjct: 334 KILNLLVAKCHSVLRDSDIFARWGGEEFIILLPETDLLQASSAAERLRGALAQSELRTND 393

Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
           G +I+ T+S G     +K   I  II +AD+ALY+AKK GRNR V
Sbjct: 394 GTNINFTVSIGFTIFGNKNILIDEIIKKADKALYLAKKQGRNRAV 438


>gi|167552973|ref|ZP_02346723.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|204930080|ref|ZP_03221101.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204321074|gb|EDZ06275.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205322476|gb|EDZ10315.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 353

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 102/199 (51%), Gaps = 13/199 (6%)

Query: 71  LVIISITISLLLG-YISGSILKELFISYN-------RISQLSRIDCLSGLLNHSA---FI 119
           LV +++T  L+ G +I      E ++ Y        R+  ++  D L+G  N  +   F+
Sbjct: 154 LVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANRRSMEIFL 213

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGE 178
                  E  +++  D+DYFK  ND++GH  GD  +A ++  +     TP   V R GGE
Sbjct: 214 GDALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVAGVMKRSVRTPADLVARYGGE 273

Query: 179 EFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EF      SS  EAA++A  ++  + E +  + +S  S  +T+S GI      + ++ II
Sbjct: 274 EFVVVLPSSSLNEAALVAERIQTNLRETAMPHAASAVSETVTVSMGITLSTAGDTVTGII 333

Query: 238 YRADQALYVAKKSGRNRVV 256
            RAD+ALY AK+ GRNR V
Sbjct: 334 ARADEALYRAKQQGRNRWV 352


>gi|90022477|ref|YP_528304.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89952077|gb|ABD82092.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 346

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 96/184 (52%), Gaps = 14/184 (7%)

Query: 83  GYISG--SIL----KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKL 129
           GYISG  S L    KEL I+  +IS ++  D L+G+ N       L +        N  +
Sbjct: 156 GYISGLRSKLRNRNKELNIALVKISDMANRDELTGIANRRKIFEVLDTEVKRKREPNTAI 215

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            I   D+D+FK+IND +GH  GD+V+  +++++     T    GR GGEEF      +S 
Sbjct: 216 GICILDVDHFKRINDTYGHQAGDEVLKRIAEEVPKSLRTMDCFGRYGGEEFLLILPSTSL 275

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           +   I AN +R+ +   +   +  P   +TIS GIAE   +E I   I RAD+ALY AK 
Sbjct: 276 EGTEIKANRVREEVAKLEFK-NLPPGEKVTISIGIAEYFPEEEIDATIQRADKALYEAKA 334

Query: 250 SGRN 253
            GRN
Sbjct: 335 HGRN 338


>gi|304312890|ref|YP_003812488.1| hypothetical protein HDN1F_32720 [gamma proteobacterium HdN1]
 gi|301798623|emb|CBL46855.1| Hypothetical protein HDN1F_32720 [gamma proteobacterium HdN1]
          Length = 319

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 101/203 (49%), Gaps = 16/203 (7%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--- 122
           VE + +++  +T + +   +  + +K+L         +SRID L+ L N S + S L   
Sbjct: 122 VEKVCVILFDVTDTAIYRTMHQAAIKKL-------EMVSRIDGLTQLFNRSHWQSRLNEE 174

Query: 123 ----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                 Y   LS++ FD+D+FK +ND +GH  GD V+  +S  +          GR GGE
Sbjct: 175 FSRSARYQTPLSLIMFDLDFFKNVNDTYGHLGGDAVLCAVSAVIKNSVRENDIAGRYGGE 234

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTII 237
           EF      + E  A I+A  +R  IE + I       I  T S G+ E     P    +I
Sbjct: 235 EFGILLPNTPESGAMIVAERIRASIEATTIPFEDY-EIRATASLGVTEYKATVPDCENLI 293

Query: 238 YRADQALYVAKKSGRNRVVCFSD 260
            RAD ALY AK++GRNRV+ F++
Sbjct: 294 ARADAALYKAKEAGRNRVILFTE 316


>gi|288573949|ref|ZP_06392306.1| diguanylate cyclase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569690|gb|EFC91247.1| diguanylate cyclase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 494

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 89/168 (52%), Gaps = 12/168 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
           +R+  L+  D L+GL N       L S  E+       LS+V  DID+FK +NDNFGH V
Sbjct: 331 DRLEYLANRDSLTGLWNRRKMDQILLSETERSSRYGSSLSVVMVDIDHFKNVNDNFGHEV 390

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V++ ++  +         VGR GGEEF      +  + A   A  +R  +E++  + 
Sbjct: 391 GDTVLSSIAALMKNCTRAGDSVGRWGGEEFLVVLPETDVKGALEYAERMRSAVEDNVFH- 449

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV-VC 257
                I IT S G+ +    EP++  + RAD+ALY AK+ GRNRV +C
Sbjct: 450 ---DDIRITSSFGVTQYRSGEPVNEFVARADEALYDAKEKGRNRVEIC 494


>gi|332531707|ref|ZP_08407592.1| diguanylate cyclase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038683|gb|EGI75125.1| diguanylate cyclase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 367

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/185 (36%), Positives = 96/185 (51%), Gaps = 22/185 (11%)

Query: 91  KELFISYNRIS-------QLSRIDCLSGLLNHSAF---ISSLGSYNEKLS----IVFFDI 136
           K  F +Y R+S        L+  D L+GL N   F   +S L + N+       ++  DI
Sbjct: 173 KTRFSAYTRLSIRNLEIQHLAETDKLTGLYNRQKFDFELSQLIAKNDVFKTPHCLLICDI 232

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK IND +GH VGD V+   +  L    G    + R GGEEF      +S  ++A  A
Sbjct: 233 DHFKNINDTYGHLVGDNVLTEFAKILKSRMGNDALIARWGGEEFTIILSNTSLNDSAKKA 292

Query: 197 NDLRK-IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +DLRK I EN+  N++       TIS G+A     + +  ++ RAD ALY AK +GRN+ 
Sbjct: 293 DDLRKYIAENTVTNVA------FTISIGLATIQKDDTVLKLLERADIALYKAKNNGRNK- 345

Query: 256 VCFSD 260
           VC SD
Sbjct: 346 VCVSD 350


>gi|268679295|ref|YP_003303726.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617326|gb|ACZ11691.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 172

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 93/170 (54%), Gaps = 16/170 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q S  D L+GL N   F   +         Y   L+++  D+D+FK+IND +GH VGD
Sbjct: 2   LKQESITDGLTGLRNRRYFDQRISEEVALSRRYKLPLTLMLVDVDHFKKINDTYGHTVGD 61

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-- 210
           +V+  LS  ++ V      V R GGEE       +++++A ILA  LR+ +E +++    
Sbjct: 62  EVLKKLSQIILSVVRDSDIVARYGGEEIVIITPNTTKEDAGILAERLREKVEQTKVATIA 121

Query: 211 SSGPSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNRVV 256
           ++   + +TIS G+   C    + T    ++  +DQALY+AKK GRNRVV
Sbjct: 122 TTQEVVQVTISIGV---CALSAVITDQEALLEESDQALYLAKKYGRNRVV 168


>gi|153005101|ref|YP_001379426.1| diguanylate cyclase [Anaeromyxobacter sp. Fw109-5]
 gi|152028674|gb|ABS26442.1| diguanylate cyclase [Anaeromyxobacter sp. Fw109-5]
          Length = 758

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 98/189 (51%), Gaps = 15/189 (7%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLS 130
           + ++ G  + SIL+     Y    +L+  D L+GL NH  F + L  +        +K+S
Sbjct: 562 LEVIAGQAAQSILRARL--YEEAERLATTDGLTGLTNHRTFQARLDEHLALAARSGQKVS 619

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D+FK +ND +GHPVGD+V+  ++  L         V R GGEEFA     +   
Sbjct: 620 LLLCDVDHFKSVNDTYGHPVGDEVLRGVARVLAGDARQTDVVARYGGEEFAIVMPATDGA 679

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVA 247
            A ++A  +R+ +         GP + +T+S G+A   E   ++P   ++ RAD  LY A
Sbjct: 680 SAVVIAERIRERLAAVTFQTEQGP-LRVTMSLGVATWPEDGARKP--ELVERADACLYHA 736

Query: 248 KKSGRNRVV 256
           K+ GRN+ V
Sbjct: 737 KRHGRNQTV 745


>gi|71906110|ref|YP_283697.1| GGDEF [Dechloromonas aromatica RCB]
 gi|71845731|gb|AAZ45227.1| GGDEF protein [Dechloromonas aromatica RCB]
          Length = 412

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 88/164 (53%), Gaps = 8/164 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+GL+N   F+ S  +       Y   +++   D+D+FK++ND +GH  GD
Sbjct: 247 LEKLANKDGLTGLMNRRFFMQSAEAELQRAQRYRRPVTVAMADLDFFKKLNDTYGHAAGD 306

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+   +D +         V R GGEEFA      S  EA  LA  LR    N++I +  
Sbjct: 307 AVLCAFADLVRDSSRQSDLVCRYGGEEFAFLFPEISPTEAEALAERLRASCANAEIGLPD 366

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G ++ +T+S G+A+   + PI   +  AD ALY AK+ GRNRVV
Sbjct: 367 GRTVKVTVSMGLAD-ASECPIEIALKHADDALYEAKRLGRNRVV 409


>gi|323498784|ref|ZP_08103770.1| diguanylate cyclase [Vibrio sinaloensis DSM 21326]
 gi|323316146|gb|EGA69171.1| diguanylate cyclase [Vibrio sinaloensis DSM 21326]
          Length = 324

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 92/167 (55%), Gaps = 7/167 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           + +LS  D L+G+LN  AFI SL           LS +  DID+FK+IND  GH  GD+V
Sbjct: 140 LKRLSETDELTGILNRRAFIHSLQEAFNSVERSNLSCLMVDIDHFKEINDQVGHLSGDEV 199

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           I+ ++            VGRLGGEEF      +S  +A  +A  +R+ I ++   +    
Sbjct: 200 ISHVAQLCQQQIRASDAVGRLGGEEFGVMLSHTSAIQAYDIAERIRRSIADTPCQVDD-K 258

Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +I+ T+S GIAE       + T++ +AD+A+Y +K +GRN+V  + D
Sbjct: 259 TIYPTVSIGIAEADATTHDVKTLLVQADKAMYYSKHTGRNQVTLYHD 305


>gi|254784734|ref|YP_003072162.1| GGDEF domain-containing protein [Teredinibacter turnerae T7901]
 gi|237685671|gb|ACR12935.1| GGDEF domain protein [Teredinibacter turnerae T7901]
          Length = 444

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 93/182 (51%), Gaps = 12/182 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDIDYFK 140
           +I K L +   +   L++ D L+GLLN           L ++ E+    S V  DID+FK
Sbjct: 266 AINKLLNLQNKQFEDLAKTDQLTGLLNRIGIRDVLYDGLNNWKERRTPFSFVLIDIDHFK 325

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND+FGH VGD+++   +  L        F+ R GGEEF      +   +A +LA  LR
Sbjct: 326 QVNDSFGHDVGDQILKLTAKLLAENIRRSDFLARWGGEEFILVCPDTDLYQAQVLAELLR 385

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           K +E++ ++    P   IT S G++       +  +  RAD ALY AK  GRN+V   +D
Sbjct: 386 KKLEDAPLH----PERQITASFGVSA-LSTPNLDDLFKRADAALYEAKTQGRNKVCAVAD 440

Query: 261 IE 262
            +
Sbjct: 441 TD 442


>gi|94499999|ref|ZP_01306534.1| probable two-component response regulator [Oceanobacter sp. RED65]
 gi|94427857|gb|EAT12832.1| probable two-component response regulator [Oceanobacter sp. RED65]
          Length = 364

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 96/170 (56%), Gaps = 15/170 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQINDNFGHPVG 151
           ++ +L+  D L+G+ N   F ++L       S +E  LSI+F D+D+FK+INDNFGH  G
Sbjct: 186 KLERLNETDTLTGIYNRQYFDNALDMQWDLASRSENSLSILFLDLDHFKKINDNFGHLAG 245

Query: 152 DKVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           D+V+   +     +    T M + R GGEEFA     + +Q+A  LA  +R  IEN+   
Sbjct: 246 DQVLCHAAHLFSEIARRKTDM-IARYGGEEFAIILPATEKQDALDLAEQIRHAIENTPCR 304

Query: 210 ISSGPSIHITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              G  IH+T+S G   +       P+ T + +ADQALY AK +GRN+++
Sbjct: 305 SDQG-LIHLTVSIGVNSVVPSPQGSPV-TFLDQADQALYQAKNNGRNQIM 352


>gi|326796878|ref|YP_004314698.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326547642|gb|ADZ92862.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 317

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 90/165 (54%), Gaps = 9/165 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG----SYNEKLS---IVFFDIDYFKQINDNFGHPVG 151
           ++ Q+S+ D L+ L N +    +LG    SY +      +V  DID+FK++ND +GHPVG
Sbjct: 151 KLDQMSKTDGLTDLNNRANLDRALGMIFSSYTKNKGTHCLVMADIDHFKKVNDTYGHPVG 210

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++  L        FVGR GGEEFA     + ++ A      +R+ I    I  +
Sbjct: 211 DEVLKDVAKILGGSSRRGDFVGRFGGEEFAILLPNTGKEGAFKYCEKIRETIAKRDIKTA 270

Query: 212 SGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255
            G SI+ITIS G+ E    E  +S  + +AD ALY AK  GRN+ 
Sbjct: 271 QG-SINITISLGVCELSDAEKDVSAWLSKADDALYRAKSEGRNKT 314


>gi|323701212|ref|ZP_08112887.1| diguanylate cyclase [Desulfotomaculum nigrificans DSM 574]
 gi|323533814|gb|EGB23678.1| diguanylate cyclase [Desulfotomaculum nigrificans DSM 574]
          Length = 337

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 129/261 (49%), Gaps = 37/261 (14%)

Query: 23  SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL 82
           SPH F+  F +   ++I  +IF    +LF  G  P   L +++   L +V + + +  + 
Sbjct: 87  SPHNFITRFGM---LYILGLIF----YLFRFG-QPL-ALIWLVGSILQIVSVGLYLMSMD 137

Query: 83  GYISGSILKELFISY----------NRISQ----LSRIDCLSGLLNHSAFISSL------ 122
                S++  L ISY           R+ Q    LS  D L+GL N     + L      
Sbjct: 138 CLYHMSLIPVLIISYLFIGKVLADEERVKQQLQNLSETDQLTGLANFRGLQARLEWCASH 197

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                + LS++  DID FK+ ND +GH  G++++  L++ L+   G+ +F+ R GGEEF 
Sbjct: 198 EAGKGDSLSLIILDIDNFKKYNDTYGHEQGNRLLKELAEYLIFFMGSGVFMARYGGEEFI 257

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYR 239
               G ++  A   A+ L   I     N   GP   +TISAGIA      +E +  +I +
Sbjct: 258 VLLPGVNQDTAKQTADRLVSGIAAHSFN--HGP---VTISAGIASTTSGSREEVFQLIEK 312

Query: 240 ADQALYVAKKSGRNRVVCFSD 260
           ADQALY AK++G+N+ V +++
Sbjct: 313 ADQALYRAKRNGKNQAVLYTE 333


>gi|224824142|ref|ZP_03697250.1| diguanylate cyclase [Lutiella nitroferrum 2002]
 gi|224603561|gb|EEG09736.1| diguanylate cyclase [Lutiella nitroferrum 2002]
          Length = 528

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 92/182 (50%), Gaps = 17/182 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           S  ++ EL  + ++++ L+R D L+GL N  A   +L           E+ S+V  DID+
Sbjct: 336 STRLVNELAEANSKLAHLARTDTLTGLPNRRALEEALEQQLQRSRRNGEQASLVLLDIDH 395

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND +GH  GD VI  L   +          GR GGEEF        E+ AA  A  
Sbjct: 396 FKVVNDRYGHDAGDAVIRALGKAMSETIRNVDVAGRWGGEEFLVVLANVDEEGAAAFAER 455

Query: 199 LRKIIENSQINISSGPSIHI--TISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNR 254
           LR  +E+S   ++ G  +H+  TIS G+A     H+E     + RAD+ALY AK  GRNR
Sbjct: 456 LRTRVESS--TVAHG-ELHVRYTISLGVAPLSTPHRE---AWLKRADEALYRAKLDGRNR 509

Query: 255 VV 256
             
Sbjct: 510 TA 511


>gi|159184874|ref|NP_354678.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
 gi|159140154|gb|AAK87463.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
          Length = 356

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/184 (34%), Positives = 100/184 (54%), Gaps = 9/184 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKL-----SIVFFDIDYFKQIN 143
           + ++ +  +   +++  D L+ L N  AF   L S Y+  +     ++V  DID+FK+IN
Sbjct: 162 MHQVRLELDEYKRIANTDSLTRLSNRRAFDDRLASVYDSSIGLQYTTLVLLDIDHFKRIN 221

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGHPVGDK++A ++  +        FV R GGEEFA    G++ +E  ++   +R  +
Sbjct: 222 DTFGHPVGDKILATVASVIRANVRKDGFVARSGGEEFAIILDGNTPEEVMVMCERIRLSL 281

Query: 204 ENSQI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD- 260
           E++   N  SG     +TIS G A        S +   AD ALY AK++GRNR V + D 
Sbjct: 282 ESTPFRNSRSGADYGTVTISIGFASAARASNPSELYGHADTALYHAKETGRNRSVFYEDG 341

Query: 261 IENN 264
           ++NN
Sbjct: 342 MQNN 345


>gi|299134563|ref|ZP_07027755.1| diguanylate cyclase [Afipia sp. 1NLS2]
 gi|298590373|gb|EFI50576.1| diguanylate cyclase [Afipia sp. 1NLS2]
          Length = 398

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/192 (35%), Positives = 102/192 (53%), Gaps = 4/192 (2%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN 126
           EN++LV+ SIT    LG +S + L ++ I+ +   + +  D L+GL N  A         
Sbjct: 186 ENINLVM-SITSIGGLGALSLA-LNQVRIARHHQRE-AETDALTGLFNRRALFERSLRLR 242

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             +++  FDID+FKQ+ND  GH VGD V+   +  L           RLGGEEF      
Sbjct: 243 GSVAVAVFDIDHFKQVNDRHGHQVGDTVLQTFASLLAANVRDGDLAARLGGEEFVIILSE 302

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
           ++  +A  +A  +R+     Q  ISS  S  +T+SAGIA       I  ++ +AD ALY 
Sbjct: 303 TTMDQATQIAERVRESFAGQQF-ISSSGSFVVTVSAGIAGGDSDTDIIALLRQADTALYD 361

Query: 247 AKKSGRNRVVCF 258
           AK+SGRNRV+ +
Sbjct: 362 AKRSGRNRVLLY 373


>gi|171316470|ref|ZP_02905688.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
 gi|171098410|gb|EDT43214.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
          Length = 506

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 12/175 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPVG 151
           ++ L+R D L+GL N  A  ++L    E+L        S++F D D+FKQ ND +GH  G
Sbjct: 328 LTNLTRTDPLTGLHNRRALDAALADEWERLQRGSDGSLSVLFIDADHFKQYNDRYGHAQG 387

Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209
           D  + FL++ +            R GGEEF A    + E  A  +A  +R+ +E ++++ 
Sbjct: 388 DTALRFLAECIRAHTRRRGDLAARYGGEEFVAVLPDTDEHGAQQVAEAIRRAVERNRLDG 447

Query: 210 -ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             ++ P+  ++I      R     +  + ++AD ALY AK+ GRNR VC +D E+
Sbjct: 448 FDATIPAFTVSIGCATGHRARPASVHALTHQADLALYAAKRDGRNR-VCVADGES 501


>gi|83313514|ref|YP_423778.1| GGDEF domain-containing protein [Magnetospirillum magneticum AMB-1]
 gi|82948355|dbj|BAE53219.1| FOG: GGDEF domain [Magnetospirillum magneticum AMB-1]
          Length = 578

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 87/165 (52%), Gaps = 9/165 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+G+ N   F       +     +   L  +  DID+FK+IND  GHPVGD
Sbjct: 413 LRRLATTDVLTGIFNRRHFMEMARIEVDRARRHGRPLVALMLDIDHFKRINDTHGHPVGD 472

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             I  L+D    +      +GR+GGEEFA     +    A ++A  LR+ +   +I    
Sbjct: 473 VAIKALADVCTQIIRHEDVLGRMGGEEFAIVLTETDLDGALLVAERLRQAVAAIRIPAEL 532

Query: 213 GPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
           G ++  T S G+AER   +  I TI+ RAD ALY AK+SGRN+V 
Sbjct: 533 G-TVAFTTSIGVAERLEGDATIDTILSRADMALYSAKRSGRNKVA 576


>gi|296158018|ref|ZP_06840851.1| diguanylate cyclase [Burkholderia sp. Ch1-1]
 gi|295891786|gb|EFG71571.1| diguanylate cyclase [Burkholderia sp. Ch1-1]
          Length = 381

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 113/214 (52%), Gaps = 16/214 (7%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILK--ELFISYNRISQ----LSRIDCLSG 111
            YG  +++   L  V  S  I L LG ++   L    + ++++R+++    L+ ID L+G
Sbjct: 169 MYGFGWLMQTGLLQVSPSNVIFLALGILAPLCLSIGVVMLAHDRLAERLERLANIDDLTG 228

Query: 112 LLNHSAFISS----LGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
            L+  AF+++    L +  +    L++   DID FK +NDN+GH  GD+V++  +  +  
Sbjct: 229 ALSRRAFLAAGDVLLNASRQTRSPLTMAIIDIDSFKAVNDNYGHAAGDQVLSHFATFVAR 288

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAG 223
              T    GRLGGEEF      ++  EA  L + LR ++   +   +  G  +  T S G
Sbjct: 289 NLRTGDVFGRLGGEEFGVLCPATTTAEAVSLLDRLRIRLASTAPNGLPRG--LRYTFSVG 346

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +    E ++ ++ RAD ALYVAK SGRNRV+ 
Sbjct: 347 VDQLRRDESLAQLMARADGALYVAKASGRNRVMA 380


>gi|316935192|ref|YP_004110174.1| hemerythrin-like metal-binding domain-containing/PAS/PAC sensor
           -containing diguanylate cyclase [Rhodopseudomonas
           palustris DX-1]
 gi|315602906|gb|ADU45441.1| diguanylate cyclase with PAS/PAC sensor and hemerythrin-like
           metal-binding domain [Rhodopseudomonas palustris DX-1]
          Length = 468

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 101/198 (51%), Gaps = 12/198 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS---- 120
           L+   + V  + T  LLL   +G + +E+     ++ +L+  D L+GL N  + +     
Sbjct: 261 LIAAATDVTGAKTSELLLSEANGRLEREVSERTRKLKRLALADPLTGLANRRSLLERIDR 320

Query: 121 ----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
               S GS +E LS++F D+D+FK IND  GH  GD  +  ++  +        FVGRLG
Sbjct: 321 EVARSAGSGDE-LSLLFIDVDHFKTINDTLGHAAGDAALIEVARLIEQSLRRTDFVGRLG 379

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236
           GEEF A    + E  A   A+ +R+ I   + +    P   +T+S G++     +  + +
Sbjct: 380 GEEFVAVLAKTGEAGACEAADTIRRTISRHEFDGLGRP---VTVSIGVSSHGSGDDGTAL 436

Query: 237 IYRADQALYVAKKSGRNR 254
           + RAD A+  AK+ GRNR
Sbjct: 437 LDRADHAMLQAKRDGRNR 454


>gi|311695269|gb|ADP98142.1| sensory box/GGDEF family protein [marine bacterium HP15]
          Length = 317

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 106/226 (46%), Gaps = 35/226 (15%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN----------------RI 100
           P  G E  + +NL       TIS L G  +G + K   + Y+                ++
Sbjct: 101 PITGTEEYMFQNL-------TISPLSG-TTGEVNKVCLMVYDVTDIASSKMALERANEQL 152

Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++LS  D L+GLLN   +             Y    S+V FDID+FK +ND  GH  GD+
Sbjct: 153 AKLSMTDRLTGLLNRGTWENLVDAEFERFRRYGHTTSLVMFDIDHFKPVNDTHGHLAGDE 212

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           VI   +             GR GGEEF      +  + A I+   +R+ IE S +  S  
Sbjct: 213 VIKHTASLTRNAIRQSDSAGRYGGEEFGIILPETDAEGARIICERIRESIEQSVVETSVA 272

Query: 214 PSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRVVC 257
           P I  T+S GIA+   +EP + + +  +AD+ALY AK+ GRNRVV 
Sbjct: 273 P-IRYTVSIGIAQ-LTEEPENYMQWMQKADEALYAAKEGGRNRVVV 316


>gi|254457555|ref|ZP_05070983.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207086347|gb|EDZ63631.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 539

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 87/170 (51%), Gaps = 11/170 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           ++    +  ++  D L+ L N S         I+   + +  LSI+F DID+FK +ND +
Sbjct: 372 YVKIKELEHMASTDVLTKLFNRSKLNDVLEKEIALSNAISSPLSIIFIDIDHFKDVNDTY 431

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGDKV+  +++ +           R GGEEF      +    A+ILA  LR  +E  
Sbjct: 432 GHDVGDKVLIDIANIISSSTRASDIAARWGGEEFMITLQSTDTAHASILAEKLRATVEEY 491

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              I      ++TIS G+ E  + E   T I R D+ALY AK+SGRNRVV
Sbjct: 492 IFAIVG----NLTISLGVTEYMNNESEETFIKRVDKALYEAKESGRNRVV 537


>gi|299133792|ref|ZP_07026986.1| diguanylate cyclase [Afipia sp. 1NLS2]
 gi|298591628|gb|EFI51829.1| diguanylate cyclase [Afipia sp. 1NLS2]
          Length = 355

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 9/165 (5%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N   F  +L +        +E LS++  DID+FK  NDN+GH  GD+V+  ++
Sbjct: 181 DPLTSLGNRKYFDRALDAAVEHAQQNSEPLSLLMIDIDHFKSFNDNYGHLTGDQVLRLVA 240

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--H 217
             L           R GGEEFA     +S ++A  +A+++R+ + + Q+   S   I   
Sbjct: 241 LALKANIKGQDLTARYGGEEFAVILPNTSMRQALAVADNIRRAVMSKQLKKKSTGEILGR 300

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +TISAG++     +    +I RAD  LY AK+ GRNRV+C +D E
Sbjct: 301 VTISAGVSVFQSGDDAPALIDRADACLYAAKRHGRNRVICEADPE 345


>gi|288940063|ref|YP_003442303.1| PAS/PAC sensor-containing diguanylate cyclase [Allochromatium
           vinosum DSM 180]
 gi|288895435|gb|ADC61271.1| diguanylate cyclase with PAS/PAC sensor [Allochromatium vinosum DSM
           180]
          Length = 433

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 87/164 (53%), Gaps = 8/164 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+G+LN   F               ++LS+   DID+FK+IND  GH VGD
Sbjct: 266 LRELATTDPLTGVLNRRGFSEQAQGRLAGALRDGQELSLAMIDIDFFKRINDTHGHAVGD 325

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  L+  L   F     +GRLGGEEFA    G++ +++ +L +  R  +  + + +  
Sbjct: 326 QALIHLAGLLRTSFRESDVIGRLGGEEFAVLLPGATLEQSHVLMDRFRMRLAATPLKLHD 385

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G  +  T S G+AE    K  ++ +   AD ALY AK SGRNRV
Sbjct: 386 GRWLGFTASIGVAELNPEKAGLAALTKAADSALYAAKHSGRNRV 429


>gi|253687875|ref|YP_003017065.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251754453|gb|ACT12529.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 490

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 88/166 (53%), Gaps = 8/166 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAF---ISSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ Q++  D L+GL+N  AF      LG+ N    + LSI+  DID+FK+IND +GH VG
Sbjct: 324 RLEQMATTDKLTGLMNRQAFDYLFRRLGTKNALQHKSLSIILIDIDHFKKINDKYGHNVG 383

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  +S  L     +     R GGEEF           A   A  LR  IE + +   
Sbjct: 384 DMVLKEVSSILSANTRSSDQSCRWGGEEFVILLDDCDINAAQQRAEALRHNIEITPLPYR 443

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            G  I +T S G+AE    E +S +I RAD ALY AK+ GRN+VV 
Sbjct: 444 EG-IIQVTASCGVAEYRAGETLSMLINRADIALYQAKQQGRNQVVS 488


>gi|190573464|ref|YP_001971309.1| putative GGDEF domain signalling protein [Stenotrophomonas
           maltophilia K279a]
 gi|190011386|emb|CAQ45001.1| putative GGDEF domain signalling protein [Stenotrophomonas
           maltophilia K279a]
          Length = 554

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 105/203 (51%), Gaps = 12/203 (5%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           LEY  VE L L +  +   ++  Y     L  L    + + QL+  D L+GL N  A + 
Sbjct: 344 LEY-RVEALQLAVTWLL--MMAAYALNQRLGRLRQQRDELRQLAETDGLTGLPNRRAGLQ 400

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L  + E+       L I F DID FK IND  GH VGD+V+  ++  L     +   V 
Sbjct: 401 QLARHLERVDRERGPLVIGFLDIDLFKDINDRHGHAVGDQVLVAVARALRAAVRSQDEVV 460

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEP 232
           R+GGEEF     G   + A+   + LR+ I  +   +   P + +T S G+A+ R  ++ 
Sbjct: 461 RMGGEEFLLLMPGMPREAASARLDRLRQRITEAGQALQV-PGLEVTASIGLAQWRPGEDD 519

Query: 233 ISTIIYRADQALYVAKKSGRNRV 255
           ++ ++ RAD A+YVAK++GRNRV
Sbjct: 520 LAGLLRRADHAMYVAKRAGRNRV 542


>gi|209884911|ref|YP_002288768.1| response regulator protein [Oligotropha carboxidovorans OM5]
 gi|209873107|gb|ACI92903.1| response regulator protein [Oligotropha carboxidovorans OM5]
          Length = 457

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 81/160 (50%), Gaps = 11/160 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N       L +  E+       L+++  DIDYFK IND  GH  GD V+   +
Sbjct: 295 DPLTGLHNRRYLEGHLATLAEQAAVRGKPLALMILDIDYFKSINDTHGHDAGDDVLREFA 354

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHI 218
            ++           R GGEEF      + +  A I+A  LR+ I N    I  G   I +
Sbjct: 355 SRIRKSVRGIDLAARYGGEEFVIVMPETDQHVAGIIAERLRRAIANEAFPIEKGAKQIEV 414

Query: 219 TISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           TIS G+A  E  H EP+  ++ RADQALY AK  GRNRVV
Sbjct: 415 TISVGLATLETKH-EPVGDVLKRADQALYRAKHDGRNRVV 453


>gi|78484367|ref|YP_390292.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78362653|gb|ABB40618.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
          Length = 423

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 95/178 (53%), Gaps = 12/178 (6%)

Query: 91  KELFISYNRI-SQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQI 142
           +E  +  N+I  QLS  D L+ L N       L   ++K        S++  DID FK++
Sbjct: 246 REDLLHKNKILEQLSTTDPLTQLCNRLKIERVLEDLHQKYEDEQQIYSLLLIDIDCFKKV 305

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH VGD+V+  LS++L   F     +GR GGEEF       + ++A + A   R+ 
Sbjct: 306 NDTYGHTVGDEVLKELSERLKQSFTQHGHIGRWGGEEFIVILENETLEQAVVAAETFRQK 365

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            EN+   I  G   ++T+S G+A     + IS +I+ AD  LY +K +GRNRV  +S+
Sbjct: 366 TENTSF-IEVG---NLTVSIGVATVTSAQTISELIHSADLGLYESKHAGRNRVTVYSN 419


>gi|188581186|ref|YP_001924631.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium populi BJ001]
 gi|179344684|gb|ACB80096.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium populi BJ001]
          Length = 298

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 86/161 (53%), Gaps = 11/161 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +L+  D L+ LLN  AF+       +K      L  +  DID+FK+IND +GH VGD  I
Sbjct: 131 RLAETDPLTALLNRRAFLQRTRDAAQKAGPFGNLCAILLDIDHFKRINDEYGHDVGDAAI 190

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L+   G     GRLGGEEFA    G     A  +A+ LR    + +I    GP 
Sbjct: 191 KAVAG-LIEPEG---IAGRLGGEEFAVIVAGHPLAAAEAIASRLRLKASDLRIRSPKGP- 245

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +T S G++E    E +  ++ RAD ALY AK +GRNRVV
Sbjct: 246 VRLTCSFGVSEWSDGETVEGLLKRADIALYEAKATGRNRVV 286


>gi|219846990|ref|YP_002461423.1| diguanylate cyclase with PAS/PAC sensor [Chloroflexus aggregans DSM
           9485]
 gi|219541249|gb|ACL22987.1| diguanylate cyclase with PAS/PAC sensor [Chloroflexus aggregans DSM
           9485]
          Length = 728

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 110/221 (49%), Gaps = 33/221 (14%)

Query: 59  YGLEYILVENLS----LVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLL 113
           +GL YI  E L     +V+   TI L L  ++  + L+E  I          ID L+GL 
Sbjct: 513 FGLLYIAGEELPRSELIVMTGDTIKLALSNLALRATLREQAI----------IDPLTGLY 562

Query: 114 NHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N     +SL      +  E+  L++   DID+FKQ ND +GH  GD ++     +L V+F
Sbjct: 563 NRRYLETSLSRELHRAQREQIPLTVAMIDIDHFKQFNDQYGHDAGDTLLR----ELAVIF 618

Query: 167 GTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
              +       R GGEEF     G ++  A      LR++++  QI  +  P   ITIS 
Sbjct: 619 REHLRQSDLACRFGGEEFVLILPGVNQATAQTRLQHLREVVQQRQIIFAGAPLRPITISI 678

Query: 223 GIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDI 261
           G    C KE I    ++ RAD ALY AK+SGRNRV+ FS++
Sbjct: 679 GYFT-CEKEEIEPHILLQRADAALYAAKRSGRNRVIDFSNL 718


>gi|237729697|ref|ZP_04560178.1| response regulator [Citrobacter sp. 30_2]
 gi|226908303|gb|EEH94221.1| response regulator [Citrobacter sp. 30_2]
          Length = 558

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/162 (40%), Positives = 86/162 (53%), Gaps = 12/162 (7%)

Query: 99  RISQLSRIDCLSGLLNHSA----FISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVG 151
           R+SQ    D LSGL NHS       S++   N       +V  D+D FK IND +GH VG
Sbjct: 396 RMSQ----DSLSGLYNHSTTTHFLKSAIAESNYSGNPFCMVMVDLDRFKSINDTYGHAVG 451

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+VI  +S        +   VGR GGEEF      +S  +AA +   LR+  E    +++
Sbjct: 452 DQVIVGISQLFSHRLRSTDIVGRYGGEEFVIIMPNTSSDKAARVVERLRRDYEQVTFSVN 511

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
              S H T SAGIA+    + I T+  RADQALY AK++GRN
Sbjct: 512 DA-SFHSTFSAGIAQWQFGDRIETLRERADQALYAAKQNGRN 552


>gi|83594703|ref|YP_428455.1| diguanylate cyclase [Rhodospirillum rubrum ATCC 11170]
 gi|83577617|gb|ABC24168.1| Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           domain [Rhodospirillum rubrum ATCC 11170]
          Length = 492

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 90/166 (54%), Gaps = 9/166 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+G LN  AF+ +          + E +++   DID+FK++ND  GH  GD
Sbjct: 327 LRRLATTDPLTGALNRRAFMEAARRDLALAQRHGEPVTVALADIDHFKRVNDQHGHATGD 386

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +      +         +GR+GGEEFA     ++   A +LA+ LR+ + N ++   S
Sbjct: 387 EALKTFVATVHGALRASDVLGRMGGEEFALILPHTALASAMLLADRLRQTLANLRVPCPS 446

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           G  +  T+S G+AE   H   I T++  AD+ALY AK +GRNRV+ 
Sbjct: 447 G-EVEFTVSIGLAELGTHGTTIDTLLQAADEALYRAKSAGRNRVIA 491


>gi|117918726|ref|YP_867918.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117611058|gb|ABK46512.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 485

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 73/210 (34%), Positives = 108/210 (51%), Gaps = 23/210 (10%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLL 113
           L  F+G       NL+L ++ +TI +LL  IS   L      Y R +  ++  D L+G  
Sbjct: 288 LNTFWG-------NLALSLL-VTIGILL--ISNMTLGR----YQRKLEVMASTDKLTGAA 333

Query: 114 NHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N   F        EK       +SI+  DID+FK++ND++GH +GD V+  +++ L    
Sbjct: 334 NRQVFEEYFHQALEKAKLSQAPISILLVDIDHFKKVNDSYGHSIGDLVLKTVANLLRSQL 393

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                + R GGEEF          +AA LA   R +I   ++ ++ G  I IT+S G+AE
Sbjct: 394 KNQDVLCRWGGEEFLILVPEQDLSQAAELAEQFRDLISQRELKVN-GVHIAITVSIGVAE 452

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               EP   +I RAD ALY AK++GRN+VV
Sbjct: 453 YQKLEPAEDLIKRADLALYQAKEAGRNQVV 482


>gi|254448933|ref|ZP_05062388.1| diguanylate cyclase [gamma proteobacterium HTCC5015]
 gi|198261470|gb|EDY85760.1| diguanylate cyclase [gamma proteobacterium HTCC5015]
          Length = 384

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 8/184 (4%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIV 132
           LL  ++ S ++      + + QLS  D L+ + N    +  L         S + +LS++
Sbjct: 199 LLVAMNSSAIRRWRQRESEVRQLSTTDPLTQVANRRHLLERLNLEISRCERSGHSELSLL 258

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK IND  GH  GD+ +   +  L         VGR GGEEF      +  Q A
Sbjct: 259 MMDLDHFKSINDEHGHLFGDEALRVTARVLREQSRNTDLVGRYGGEEFCLLLPDTGPQGA 318

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             +A   R+ +E + I+   G  +HIT S G+A     +   ++++RAD+ALY AK+ GR
Sbjct: 319 LQIAERCRQALEQADIDREDGEVLHITTSIGLATYQMGDTNESLLHRADEALYQAKEQGR 378

Query: 253 NRVV 256
           NR+V
Sbjct: 379 NRIV 382


>gi|254230006|ref|ZP_04923406.1| ggdef domain protein [Vibrio sp. Ex25]
 gi|151937447|gb|EDN56305.1| ggdef domain protein [Vibrio sp. Ex25]
          Length = 320

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 9/164 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S++SR D L+GL N + +  SL          +   S+V FDID+FK++ND +GHP GD
Sbjct: 152 LSEISRKDGLTGLFNRAYWEQSLKEEFAHLKVIDGPCSLVIFDIDHFKKVNDTYGHPTGD 211

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +VI   S  L     +    GR GGEEF      +++++A   A  LRK IE   + +  
Sbjct: 212 EVIRRTSSLLRKTARSSDVCGRFGGEEFTVLLPHTNQEQACYFAERLRKRIEQEIVKVED 271

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
              I+ TIS G+ E + + E  +  +  AD ALY AK++GRN+ 
Sbjct: 272 F-LINYTISIGVCEYKPYFETHTQWLKSADAALYRAKENGRNQT 314


>gi|325293076|ref|YP_004278940.1| diguanylate cyclase [Agrobacterium sp. H13-3]
 gi|325060929|gb|ADY64620.1| diguanylate cyclase [Agrobacterium sp. H13-3]
          Length = 356

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 96/179 (53%), Gaps = 8/179 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKL-----SIVFFDIDYFKQIN 143
           ++++ +  +   +++  D L+ L N  AF   L S YN  +     +++  DID+FK+IN
Sbjct: 162 MQQVRLELDEYKRIANTDSLTRLSNRRAFDDRLASVYNSSIGLQYTTLILLDIDHFKRIN 221

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGHPVGDK++A ++  +        FV R GGEEFA    G++ +E  ++   +R  +
Sbjct: 222 DTFGHPVGDKILATVASVIRANVRKDGFVARSGGEEFAIILDGNTPEEVMVICERIRLSL 281

Query: 204 ENSQI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           E++   N  SG     +TIS G A          +   AD ALY AK++GRNR V + D
Sbjct: 282 ESTPFRNSRSGADYGTVTISIGFASASQANNPGELYGHADMALYHAKETGRNRSVIYED 340


>gi|323136938|ref|ZP_08072018.1| diguanylate cyclase [Methylocystis sp. ATCC 49242]
 gi|322397699|gb|EFY00221.1| diguanylate cyclase [Methylocystis sp. ATCC 49242]
          Length = 260

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 98/182 (53%), Gaps = 2/182 (1%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-SLGSYNEKLSIV 132
           I I I++ L ++   +L  +  + +R+  L + D L+G+L  + F+  +  ++++    +
Sbjct: 62  IPIFITVPLAFVVFYMLLLITRTIDRVGALIQFDPLTGVLTRAHFLGETQRAFSQGGVFM 121

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D D+FK+IND +GH +GD  +  L+  L    G   FVGRLGGEEF      ++   A
Sbjct: 122 MVDADHFKKINDTYGHDLGDSALKTLASSLTASVGDSGFVGRLGGEEFGVFLPRATSALA 181

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            ++A  +R  +  S   I  G +I +T+S G AER     +   I  AD  LY AK++GR
Sbjct: 182 LLMAQTIRTTVRASGAVI-DGRAIGLTVSIGAAERRPGRSLDDAIKAADMLLYAAKRAGR 240

Query: 253 NR 254
           +R
Sbjct: 241 DR 242


>gi|86358001|ref|YP_469893.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|86282103|gb|ABC91166.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
          Length = 355

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 98/183 (53%), Gaps = 18/183 (9%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEK-----LSIVFFDIDYFKQI 142
           + KEL   Y RI+     D L+ L N  AF   L + +N        +++  DID FK+I
Sbjct: 165 VRKELD-EYKRIAN---TDSLTRLSNRRAFDDRLAAVFNNPGMRPVTALLLADIDNFKKI 220

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GHPVGDK++A ++  +       +FV R GGEEFA    G++ +E   +A  +R+ 
Sbjct: 221 NDTYGHPVGDKILATVASVIRSNVRRDVFVARAGGEEFALIIEGNTAEEVTAIAERIRRT 280

Query: 203 IE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +E     NS+  ++ GP   IT+S GI    + E    +  + D ALY AK +GRN +V 
Sbjct: 281 LETTPFKNSRTRVNYGP---ITVSIGICMASNAEDAGELYSKTDIALYGAKNAGRNCIVL 337

Query: 258 FSD 260
           + D
Sbjct: 338 YQD 340


>gi|77362279|ref|YP_341853.1| GGDEF domain-containing protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76877190|emb|CAI89407.1| putative GGDEF domain membrane protein [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 306

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 92/161 (57%), Gaps = 5/161 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            R+ +L+ +D L+G  N  A   + S       +L +   D+DYFKQIND +GH VGDKV
Sbjct: 135 KRLKKLAMLDPLTGAGNRLAMNHYFSVELRERAQLYLFLVDLDYFKQINDKYGHDVGDKV 194

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  L V F    +V R+GGEEFA  +  +SE  A  +A  +R  +EN  IN+ +  
Sbjct: 195 LIEVATLLKVTFAKG-YVFRVGGEEFALISSFNSEHAALAVAEKVRAALENKYINVDN-Y 252

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I++T S G+A    ++ ++ ++  AD+ LY AK  GRN V
Sbjct: 253 KINLTASIGVANYKPQQSLNELLKAADKQLYKAKDLGRNSV 293


>gi|260774121|ref|ZP_05883036.1| diguanylate cyclase (GGDEF domain) [Vibrio metschnikovii CIP 69.14]
 gi|260611082|gb|EEX36286.1| diguanylate cyclase (GGDEF domain) [Vibrio metschnikovii CIP 69.14]
          Length = 486

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 86/161 (53%), Gaps = 12/161 (7%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           DCL+GL N +         ++ L       +I+  DIDYFK+IND +GHP+GD+V+  ++
Sbjct: 327 DCLTGLFNRAYLSGLIQLELTRLRKVEGVSAILLIDIDYFKRINDTYGHPIGDQVLCCVA 386

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L         V R GGEEF       S Q+A   A +LR  +  S++     P  + I
Sbjct: 387 HSLNQNIREGDAVARFGGEEFMVLLPNISLQDAVEHAENLRLAV--SELTFPCLPQEVSI 444

Query: 219 TISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           T+S GI+  +     PI T  + AD+ALY AK SGRNRVVC
Sbjct: 445 TVSIGISLLDITKDNPIETAYFDADRALYRAKSSGRNRVVC 485


>gi|255524887|ref|ZP_05391836.1| diguanylate cyclase [Clostridium carboxidivorans P7]
 gi|255511457|gb|EET87748.1| diguanylate cyclase [Clostridium carboxidivorans P7]
          Length = 521

 Score = 98.2 bits (243), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 92/185 (49%), Gaps = 24/185 (12%)

Query: 92  ELFISYNRISQ----LSRI----------DCLSGLLNHSAFISSLGSYNEK-------LS 130
           EL ++ N++ Q    L R+          D L+G+ N     + L    +K       L+
Sbjct: 337 ELVVTQNKLKQANDELKRLNEELYSDSIKDGLTGVYNKKYITTLLQEEIKKTLKSSIPLT 396

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           I   DID+FK+INDN+GH  GDKV+  L+D +    G     GR GGEEF      +  +
Sbjct: 397 IAMIDIDHFKKINDNYGHLTGDKVLKKLADLVTTELGLNEKFGRFGGEEFLILMFDTQLK 456

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +   L   +R  + N +         HITIS GIAE    + IS++I RAD  LY AK +
Sbjct: 457 DGYELCEKIRSKVSNYKFEYECS---HITISIGIAELKCDDSISSLIKRADDCLYKAKFN 513

Query: 251 GRNRV 255
           GRN++
Sbjct: 514 GRNKI 518


>gi|148255364|ref|YP_001239949.1| hypothetical protein BBta_3973 [Bradyrhizobium sp. BTAi1]
 gi|146407537|gb|ABQ36043.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1]
          Length = 355

 Score = 98.2 bits (243), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 86/165 (52%), Gaps = 9/165 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F       +    + N+ LS++ FDID+FK  ND+FGH  GD+V+  + 
Sbjct: 181 DPLTGLGNRKYFDRMIEMAVEGGLTSNQPLSLLMFDIDHFKSFNDSFGHLTGDQVLRLVG 240

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--H 217
             L           R GGEEFA     +  ++A  +A+ +R+ +   ++   S   I   
Sbjct: 241 MSLKNAIKGQDIAARYGGEEFAVVLPNTPLRQALTVADQIRRAVTARELKKKSTGEILGR 300

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +TIS G++     +    +I RAD  LY AK+SGRNRV+C SD E
Sbjct: 301 VTISVGVSMLRPGDDTDALIERADACLYAAKRSGRNRVICESDPE 345


>gi|260779563|ref|ZP_05888453.1| putative sensory box/ggdef family protein [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260604372|gb|EEX30676.1| putative sensory box/ggdef family protein [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 328

 Score = 98.2 bits (243), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/181 (34%), Positives = 102/181 (56%), Gaps = 12/181 (6%)

Query: 91  KELFISYNRISQLSRI---DCLSGLLNHSAFISSL----GSYNE---KLSIVFFDIDYFK 140
           +++  +Y R  +L R+   D L+G+ N  AF+ +L     SYNE    LS +  DID+FK
Sbjct: 130 RDITSNYRRQEELKRLSETDELTGIFNRRAFLEALEQELQSYNETQRNLSCLMIDIDHFK 189

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND  GH  GD+VI  ++           ++GRLGGEEF      ++  +A  +A  +R
Sbjct: 190 EINDQVGHLSGDEVITQVARICQKQIRGSDYIGRLGGEEFGIVLSNTNAIQAYDIAERIR 249

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + IE+S  ++     IH T+S GIAE       +  ++ +AD+A+Y +K++GRN+V  + 
Sbjct: 250 QSIESSPCSVDDH-IIHPTVSIGIAEVTSGISHVKELLVQADKAMYYSKQTGRNQVTLYH 308

Query: 260 D 260
           D
Sbjct: 309 D 309


>gi|320332968|ref|YP_004169679.1| response regulator receiver modulated diguanylate cyclase
           [Deinococcus maricopensis DSM 21211]
 gi|319754257|gb|ADV66014.1| response regulator receiver modulated diguanylate cyclase
           [Deinococcus maricopensis DSM 21211]
          Length = 463

 Score = 98.2 bits (243), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 15/173 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +L+ ID L+GL N  ++++ L         Y    S++  DID+FK++ND +GH  G
Sbjct: 277 RLYELATIDDLTGLANKRSWLTRLDDALALARRYGHPTSVLIVDIDHFKRVNDTYGHLAG 336

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  L  +L         +GR GGEE  A    +    A ++A  LR  + N+ +   
Sbjct: 337 DELLRALGQELRAQARASDLIGRYGGEELVALLPHTDSAGALVMAERLRAAVHNTHLTW- 395

Query: 212 SGPSIHITISAGIAE-------RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            G +I +T S G+A          H +  S ++ RAD ALY AK+ GRNR V 
Sbjct: 396 QGEAIRVTASIGLATLIPMPGGPPHGDAASDLLGRADLALYEAKRGGRNRTVV 448


>gi|284050515|ref|ZP_06380725.1| response regulator receiver modulated diguanylate cyclase
           [Arthrospira platensis str. Paraca]
          Length = 311

 Score = 98.2 bits (243), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 89/176 (50%), Gaps = 9/176 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +   + +L+  D L+G+ N    +            Y    S++  DID+FK IND
Sbjct: 134 ELKQALVELEKLATTDPLTGIANRRHLLVLGEREFQRTHRYKNPFSVLMIDIDHFKLIND 193

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH +GDK +  +SD  V         GR GGEEF      +   EA ++A  +R+ I 
Sbjct: 194 NYGHSIGDKALKIMSDVTVNALRKVDIFGRFGGEEFVVFLPETKADEALVVAERIREAIA 253

Query: 205 NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            + I +    +IHIT+S G+      E  +  ++  AD+ALY AKK GRN+VV + 
Sbjct: 254 TTPIYVDDQ-TIHITVSIGVTIYNSSEISLDGLLMEADKALYDAKKQGRNQVVIYP 308


>gi|220922753|ref|YP_002498055.1| diguanylate cyclase [Methylobacterium nodulans ORS 2060]
 gi|219947360|gb|ACL57752.1| diguanylate cyclase [Methylobacterium nodulans ORS 2060]
          Length = 628

 Score = 98.2 bits (243), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 83/154 (53%), Gaps = 5/154 (3%)

Query: 107 DCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+GLLN         S  GS ++K+ ++  DID+FK IND +GH  GD+V+  +++ L
Sbjct: 445 DGLTGLLNRRMLDRLAQSPPGSADDKVCLILIDIDHFKAINDTYGHATGDRVLIQMAELL 504

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             V      + R GGEEFA    G+    A  +A  +R  ++ ++     G  + +T S 
Sbjct: 505 QSVLRASDVIARFGGEEFAVLVPGADLSGAITVARKVRIALQRARFTTPDGTPVRVTASF 564

Query: 223 GIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G+A  R  +E    ++  AD+ALY AK  GRNRV
Sbjct: 565 GVARGRRGQEAWPCLVELADEALYRAKSDGRNRV 598


>gi|86356126|ref|YP_468018.1| hypothetical protein RHE_CH00470 [Rhizobium etli CFN 42]
 gi|86280228|gb|ABC89291.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 392

 Score = 98.2 bits (243), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 7/192 (3%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-- 124
           E+LSL I  I     +G +S ++ +    + +R+  ++  D L+GLLN  A     G+  
Sbjct: 187 EDLSLAI-CIAGMTGIGALSLALHQWRLAARHRLEAIT--DPLTGLLNRRAVFDEYGTRP 243

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
                +++ FDID+FK +ND +GH  GD+VI   +D+L           RLGGEEFA   
Sbjct: 244 MGTTAAVIVFDIDHFKSVNDRYGHAAGDRVITVFADELTAHCRPGDTAARLGGEEFALVL 303

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQA 243
                  A + A  +R+  E  +I I  G  +  T+S G+A  R        ++  AD+A
Sbjct: 304 KEIMPGRAELTAERIRRAFEAREIPI-DGEVLKCTVSVGVAPGRSTPLDFDAMLSAADKA 362

Query: 244 LYVAKKSGRNRV 255
           LY AK+ GRNRV
Sbjct: 363 LYAAKRGGRNRV 374


>gi|117922283|ref|YP_871475.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117614615|gb|ABK50069.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 380

 Score = 98.2 bits (243), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/183 (37%), Positives = 94/183 (51%), Gaps = 21/183 (11%)

Query: 97  YNR------ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           YNR      + + SR D L+G+ N   F S L S       +    +++  DID+FK+IN
Sbjct: 195 YNRYCLELALEKGSRTDPLTGVANRRHFDSLLKSEVNRNSRFGSACALIILDIDFFKRIN 254

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHP GD VI  L++  V +      V RLGGEEFA     ++   A  L   +R  +
Sbjct: 255 DTYGHPTGDSVICSLANFCVTLSRETDLVARLGGEEFAIILPDTNISSAKNLGERIRLHV 314

Query: 204 ENSQINISSGPSIHITISAGI-AERCHK------EPIS-TIIYRADQALYVAKKSGRNRV 255
           EN  +   +G  +  TIS GI A + HK      E I+  +I  AD ALY AKK GRNR 
Sbjct: 315 ENQSLISETGEKVIWTISLGISALQEHKITKNNNEFIAEQLIQHADTALYEAKKGGRNRT 374

Query: 256 VCF 258
           V +
Sbjct: 375 VLY 377


>gi|289644991|ref|ZP_06477029.1| diguanylate cyclase [Frankia symbiont of Datisca glomerata]
 gi|289505206|gb|EFD26267.1| diguanylate cyclase [Frankia symbiont of Datisca glomerata]
          Length = 178

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 90/170 (52%), Gaps = 10/170 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +  + + +  D L+GL N   F       + S  + +  LS    DIDYFK++ND +GH 
Sbjct: 10  FEEVQRHAATDQLTGLANRRHFLEQAERAVKSHAATDLPLSAAMMDIDYFKRVNDAYGHS 69

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+V+A ++ ++         +GR+GGEEF A  +      A  LA  LR  + +  +N
Sbjct: 70  VGDEVLAEIARRIRSSLRGEEILGRIGGEEF-AVLMSVPASTATALAERLRAAVAHRPVN 128

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            S GP + I +S G+A    H   +  ++ RADQALY AK+ GR++V   
Sbjct: 129 TSIGP-LDIRLSIGLAHLAPHDTDLRDLLDRADQALYTAKRGGRDQVAVH 177


>gi|59713335|ref|YP_206110.1| GGDEF domain-containing protein [Vibrio fischeri ES114]
 gi|59481583|gb|AAW87222.1| GGDEF domain protein [Vibrio fischeri ES114]
          Length = 483

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 90/164 (54%), Gaps = 11/164 (6%)

Query: 101 SQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           S+L+  D L+G  N         +FI +  + N+  S+  FDIDYFKQIND +GH +GD+
Sbjct: 318 SKLALFDDLTGSCNRRCFEAKVLSFIQNYHAKNQTFSVALFDIDYFKQINDTYGHEIGDE 377

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+   S     +  +     RLGG+EF       +  EA  + N+L + I N +I I +G
Sbjct: 378 VLRLFSRACENICESDDHFARLGGDEFVMLLSNKNRDEAEAILNELLRSIRNIEIRI-NG 436

Query: 214 PSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255
             + +T S G++E  H +      ++ RAD+ALY AK+ GRN+V
Sbjct: 437 QLVQLTSSIGVSE-MHDDVFDACKLLSRADEALYEAKRLGRNQV 479


>gi|218437187|ref|YP_002375516.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7424]
 gi|218169915|gb|ACK68648.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7424]
          Length = 322

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 98/175 (56%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDN 145
           L ++Y  + +L+  D L+G+ N  A ++           Y+   S++  D+DYFK+IND+
Sbjct: 142 LKMAYAELEKLANTDPLTGVANRRALLNFGEQEFYRAQRYHCPFSLLIIDLDYFKKINDS 201

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH +GD  +  +++ +         +GR GGEEF     G+  ++A I+A  + ++I  
Sbjct: 202 YGHDIGDLALKTVTEAVNKAIRKIDLLGRFGGEEFVVILPGTKLKDACIVAQRICRLISE 261

Query: 206 SQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
             +++    ++++T S G+A    K+  I+ II+RADQ LY AK  GRN+VV + 
Sbjct: 262 VSLSVEQ-KTLNMTASIGVAAYNKKDKTINEIIHRADQGLYQAKNQGRNQVVVYD 315


>gi|261823793|ref|YP_003261899.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
 gi|261607806|gb|ACX90292.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
          Length = 489

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 95/180 (52%), Gaps = 16/180 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSL-GSYNEKLSIVFFDIDYFKQINDNFGHP 149
            RI  +S  D L+G+LN  +        I+S+    N+ +S++  DID+FK+IND +GH 
Sbjct: 308 KRIELISNHDALTGMLNRRSLNQHMMNIINSIRDGENKMMSLLVLDIDHFKKINDTYGHA 367

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD VI   S  +         + R GGEEF     G S+ E   +A  +R IIE S + 
Sbjct: 368 VGDNVIRGFSTAIKQHTRPQDLLCRWGGEEFLIIIQGLSKNECLEIAERIRTIIEGSSLA 427

Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           IS+G ++  T S G++    ER   E        AD+ LY+AK+ GRNRV   SDI  N+
Sbjct: 428 ISNGHAVRCTTSIGVSFFHLERI--EDFHDAFKEADKLLYIAKEQGRNRVN--SDINVNS 483


>gi|126664680|ref|ZP_01735664.1| two-component response regulator protein [Marinobacter sp. ELB17]
 gi|126631006|gb|EBA01620.1| two-component response regulator protein [Marinobacter sp. ELB17]
          Length = 379

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 112/224 (50%), Gaps = 16/224 (7%)

Query: 44  FIANIFLFYIGLT----PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR 99
           F+  + LF+  L      F  L   L + L ++ + + +S   G +S  + +  F+S  +
Sbjct: 145 FVIPLMLFFAALAIVDLEFKQLIPFLFDPLVMIFLGMVVS---GSLS-QLRRSEFLSRQQ 200

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+GLLN  A   SL         +    S++  D+D FK++ND++GH VGD
Sbjct: 201 LKSLASTDQLTGLLNRHAIHKSLEQLVARHARHGHPFSLILGDLDKFKRVNDSYGHNVGD 260

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+   +++L         + R GGEE       +    A  +A  LR  I  + +  + 
Sbjct: 261 EVLIETANRLQDHVRAGDILCRWGGEELLVVLPDTERDSALAVAEKLRCAIGEAPMT-AG 319

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G SI  TIS G+    + E I T I RAD ALY+AK+ GRNRVV
Sbjct: 320 GHSIEQTISFGVTCYHNGEHIDTTIMRADSALYLAKQGGRNRVV 363


>gi|256829265|ref|YP_003157993.1| response regulator receiver modulated diguanylate cyclase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578441|gb|ACU89577.1| response regulator receiver modulated diguanylate cyclase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 335

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 85/176 (48%), Gaps = 7/176 (3%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           I ++L  S  R  +LS  D L+GL N   F       +     YN  LS+   DID FK+
Sbjct: 159 IEEDLRRSEMRYKELSLTDELTGLYNARHFFRQVQAEVERATRYNSPLSLCVIDIDKFKR 218

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            ND +GH  GD V+A L   +  +        R GGEEF      +  +EAA +A  +R 
Sbjct: 219 YNDTYGHLCGDAVLAELGRLIQKLIRDADSAYRYGGEEFIIVLPETPREEAARVAERIRT 278

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                     +   +H+++S G+   C  E +S ++ RADQ +Y AKK GRN  VC
Sbjct: 279 TFFEHSFYPKNAQGVHVSLSLGVTSYCPGESVSDLVDRADQNMYAAKKCGRNTTVC 334


>gi|163751842|ref|ZP_02159057.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Shewanella benthica KT99]
 gi|161328258|gb|EDP99420.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Shewanella benthica KT99]
          Length = 402

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/129 (42%), Positives = 79/129 (61%), Gaps = 3/129 (2%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L++   DID+FK++ND +GH VGD+V+   + +L   FG    V R GGEEF  A  G +
Sbjct: 274 LTVALLDIDFFKKVNDTYGHDVGDEVLVEFAARLKHFFGQHFTVSRFGGEEFTVAFKGLN 333

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++A +L +  R  +E   I  S G  + IT+S GIA     + +  +I RAD+ALY AK
Sbjct: 334 QEKAFVLMDKFRSQLEMKPIVTSKG-EMFITVSTGIAG-LADDSLDGLIQRADKALYDAK 391

Query: 249 KSGRNRVVC 257
           KSGRN +VC
Sbjct: 392 KSGRN-LVC 399


>gi|310639911|ref|YP_003944669.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Paenibacillus polymyxa SC2]
 gi|309244861|gb|ADO54428.1| Diguanylate cyclase and metal dependent phosphohydrolase
           [Paenibacillus polymyxa SC2]
          Length = 616

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 95/175 (54%), Gaps = 10/175 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           K++F  Y  I + +  D  +GL NHS F ++L        S N  LS+   DID FK+ N
Sbjct: 230 KQMFTMYREIEEKANTDRRTGLYNHSYFENTLEAELNISRSQNTPLSLALIDIDDFKKYN 289

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D+FGH  GD+++ FL + L    FGT + V R GGEEF       + ++A    N +RK 
Sbjct: 290 DHFGHLKGDQLLGFLGEFLKRETFGTHITVSRYGGEEFTLLMPDHTAEQAYEKVNAIRKR 349

Query: 203 IENSQIN-ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + +S+   +   P   ++ SAGIA+ R      S ++  AD+ALY AKK G+N V
Sbjct: 350 LNDSRYEGVEIFPHGCLSFSAGIAQSRIDIYDKSQLVDLADKALYYAKKQGKNIV 404


>gi|237798898|ref|ZP_04587359.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021752|gb|EGI01809.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 249

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 111/215 (51%), Gaps = 12/215 (5%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L P   L+  + +  + V + +   +++G++S  +  +L    N + +LSR D L+GLLN
Sbjct: 26  LNPVVNLQGNMAQIYACVPVLVIYPIVIGWLSHQVTLKLCEHRNILRKLSRTDSLTGLLN 85

Query: 115 HSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           H A        F  S  +Y +   I   DID+FK +ND +GH +GD V+  +S+ L+   
Sbjct: 86  HGAWKDLLDLEFTKSQNAY-QHCVIALIDIDHFKVVNDTYGHIMGDTVLQNISEALLDNL 144

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                +GR GG+EF      +S  +A      +R  I+  ++  S    + +++S GIA 
Sbjct: 145 RDSDLIGRCGGDEFCVILPDTSLIQARETLERMRLAID--KMTHSRHCDLKVSLSIGIAA 202

Query: 227 -RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                   ++ ++ AD+ALY+AK +GRNR+V   D
Sbjct: 203 YMSEMSDAASWLHEADKALYLAKSTGRNRIVSAKD 237


>gi|153832405|ref|ZP_01985072.1| ggdef domain containing protein [Vibrio harveyi HY01]
 gi|148871434|gb|EDL70297.1| ggdef domain containing protein [Vibrio harveyi HY01]
          Length = 320

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 91/169 (53%), Gaps = 9/169 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGD 152
           +S++SR D L+GL N + +  SL     +L       S+V FDID+FK++ND +GH  GD
Sbjct: 152 LSEISRKDGLTGLFNRAYWEQSLKEEFAQLKVIEGASSLVIFDIDHFKKVNDTYGHHTGD 211

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +VI   S  L     +    GR GGEEF      +++++A   A  LRK IE   + +  
Sbjct: 212 EVIRRTSSLLRKTARSSDICGRFGGEEFTVLLPHTNQEQANYFAERLRKRIEQEIVKVEE 271

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              I+ TIS G+ E + + E  +  +  AD ALY AK+SGRN+     D
Sbjct: 272 FL-INYTISIGVCEYKSYFESHTQWLKSADAALYRAKESGRNQTCNHED 319


>gi|92117845|ref|YP_577574.1| diguanylate cyclase [Nitrobacter hamburgensis X14]
 gi|91800739|gb|ABE63114.1| diguanylate cyclase [Nitrobacter hamburgensis X14]
          Length = 354

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 90/171 (52%), Gaps = 9/171 (5%)

Query: 104 SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S  D L+GL N   F  ++             LS++ FDID+FK  NDN+GH  GD+V+ 
Sbjct: 177 SMTDPLTGLGNRKYFDRAVEDAVALAIGEGGPLSLLLFDIDHFKSFNDNYGHLTGDQVLR 236

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++  L           R GGEEFA     ++  +A  +A+ +R+ +   ++   S   I
Sbjct: 237 LVAMSLKQTIKGQDITARYGGEEFAVVLPNTALSQALTVADHIRRAVMAKELKKKSTGEI 296

Query: 217 --HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
              +TIS G++   H +   ++I RAD  LY AK++GRNRV+C +D E +T
Sbjct: 297 LGRVTISVGVSLLRHGDTPDSLIERADSCLYAAKRNGRNRVICEADPECST 347


>gi|224373317|ref|YP_002607689.1| putative diguanylate cyclase [Nautilia profundicola AmH]
 gi|223588394|gb|ACM92130.1| putative diguanylate cyclase [Nautilia profundicola AmH]
          Length = 462

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 116/220 (52%), Gaps = 16/220 (7%)

Query: 48  IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY---NRISQLS 104
           I+  +I +T  Y   Y L + L +V +S  I + L Y    + KE+         + +LS
Sbjct: 243 IYKKWIHVT--YQQGYSLKQVLLIVFVSFIIIVALVYWIRMLKKEINKRKEIEKELQKLS 300

Query: 105 RIDCLSGLLNHSAFISSLG---SYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            ID L+G+ N     ++L    SY+++    LS++FFDID+FK+IND +GH +GDK++  
Sbjct: 301 IIDSLTGIFNRYKIDTALKQQISYSKRHHLPLSVIFFDIDHFKKINDTYGHRIGDKILKE 360

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           ++D +          GR GGEEF      ++  +A  +A  L+ +IEN +     G    
Sbjct: 361 IADIIKHSLREYDIFGRWGGEEFIIILPNTNLLQAIKVAKKLKSLIENHRFKYIDG---- 416

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +T S G+ E   ++   +I+ R D  +Y AKK GRN++V 
Sbjct: 417 LTCSFGVTELMPEDNSDSILIRVDSFMYEAKKRGRNQIVS 456


>gi|330503452|ref|YP_004380321.1| GGDEF [Pseudomonas mendocina NK-01]
 gi|328917738|gb|AEB58569.1| GGDEF precursor [Pseudomonas mendocina NK-01]
          Length = 618

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 84/177 (47%), Gaps = 10/177 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           +EL +  +R+  LS  D L+G+ N   F   L           E L++   D+D+FK  N
Sbjct: 438 EELQVLNSRLEMLSLTDALTGIANRRHFDEVLAKECKRALRVGEPLALAVLDVDWFKTYN 497

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D++GHP GD  +  ++  L          V R GGEEF   A  +    A  +A  L + 
Sbjct: 498 DHYGHPAGDSCLQQIAHTLAATISRSTDLVARYGGEEFVFLAPSTGLAGAQSMAEKLVRA 557

Query: 203 IENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +E   +     P  ++TIS GIA   R    P   ++ RAD ALY AK  GRNR+ C
Sbjct: 558 VEALALPHERSPLGYVTISVGIALMPRDADSPAQALLQRADAALYRAKSQGRNRLAC 614


>gi|220933869|ref|YP_002512768.1| putative diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995179|gb|ACL71781.1| putative diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 306

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 104/207 (50%), Gaps = 23/207 (11%)

Query: 58  FYGLEYILVENL-SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           F   E   VENL S++I  +  SLL               Y +  + ++ D L+GL N +
Sbjct: 111 FREEELTEVENLLSVLIYPLRNSLL---------------YRQAVEAAQTDTLTGLYNRA 155

Query: 117 AF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
           A        +++L    + L+++  DID+FK+IND  GH  GD+V+   +D L       
Sbjct: 156 ALDHLLPRELAALRRGQQHLALLVVDIDHFKRINDTLGHSAGDQVLKAAADCLQEATRES 215

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
             + R GGEEF       S ++A +    +R+++ N +   S+ P   +T S G+A    
Sbjct: 216 DMLFRYGGEEFVMLMSTESPEDALLAGERIRRVLRNCEALQSAAPGFTLTASIGVAMARP 275

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV 256
            +   ++  RADQA+Y AK++GR+RVV
Sbjct: 276 TDSAFSLFDRADQAMYTAKQAGRDRVV 302


>gi|83310427|ref|YP_420691.1| GGDEF domain-containing protein [Magnetospirillum magneticum AMB-1]
 gi|82945268|dbj|BAE50132.1| GGDEF domain [Magnetospirillum magneticum AMB-1]
          Length = 395

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 15/228 (6%)

Query: 44  FIANIFLFYIGL---TPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI 100
            IA   L  IGL   +P +  +   + N ++ ++    SL  G+    ++KE   +   +
Sbjct: 158 LIALTALARIGLAWSSPAWDPQSAALANQAMFLLGYVFSLCDGFSFLLLVKE--DADRSL 215

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPVGD 152
            +++ ID L+G+ N + F+  L     +L        S+V  D+DYFK++ND FGH  GD
Sbjct: 216 LRMATIDQLTGIPNRAHFLD-LAEDRRRLCLRSGQAVSVVMMDVDYFKRVNDEFGHSAGD 274

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  +   L          GRLGGEEFA    G+S   A  +A+ LR I+   ++  + 
Sbjct: 275 EVLRRVGCALREHLRDVDVFGRLGGEEFAIVLPGTSLAAAVPVADRLRAILAGLEVETAK 334

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           G +  IT+S GIA+      +   +  AD  LY AK +GRN+VV  S+
Sbjct: 335 G-TTRITVSMGIADLGGGRSLELAMSEADGRLYRAKAAGRNKVVAVSE 381


>gi|297529998|ref|YP_003671273.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Geobacillus sp. C56-T3]
 gi|297253250|gb|ADI26696.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Geobacillus sp. C56-T3]
          Length = 610

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 101/191 (52%), Gaps = 11/191 (5%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           ++L+ ++S +  K L++   + +Q++R D L+GL NH  F  +L           + L++
Sbjct: 213 TILITFLSIAFRKLLYLYQEKANQVNR-DHLTGLYNHGFFKETLKEQFSDCKLLKQPLTL 271

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
            F D+D FK+ ND  GH  GD+++AF    L   V GT   V R GGEEFA     ++++
Sbjct: 272 AFLDLDDFKKYNDRNGHLQGDRLLAFFGKLLQQAVEGTNFTVARYGGEEFAILMPNTTKE 331

Query: 191 EAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAK 248
           +A    N LRK + ++    +   P   ++ S GIAE          +I+RADQALY AK
Sbjct: 332 DAYAFLNRLRKEVNDTYFEGVEHIPYRCLSFSCGIAEMEKDMHESDELIHRADQALYYAK 391

Query: 249 KSGRNRVVCFS 259
             G+N V  + 
Sbjct: 392 AQGKNNVQLYD 402


>gi|307132492|ref|YP_003884508.1| GGDEF family protein [Dickeya dadantii 3937]
 gi|306530021|gb|ADM99951.1| GGDEF family protein [Dickeya dadantii 3937]
          Length = 525

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 87/163 (53%), Gaps = 5/163 (3%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+S  +  D LSG+LN      S+    S  +K+S++  DID+FK IND+FGH VGD+VI
Sbjct: 352 RLSSEAHTDPLSGMLNRRGMQESMEEIRSEYKKISVIAIDIDHFKVINDSFGHDVGDEVI 411

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             LS Q+   F     V R+GGEEF     G+    A ++A  LR  + N+ + +     
Sbjct: 412 RKLSQQIRKNFRKTDLVCRIGGEEFLILLPGADIHVATVIAERLRNNVANT-VYMPGYRH 470

Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +TIS G+      K  +   I  AD ALY AK  GRN+VV 
Sbjct: 471 HQVTISIGVTTFNPQKSALDIAIKTADNALYKAKNGGRNQVVV 513


>gi|295700649|ref|YP_003608542.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1002]
 gi|295439862|gb|ADG19031.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1002]
          Length = 316

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 106/202 (52%), Gaps = 11/202 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           L+    +V + +TIS +  ++S  + +E   +  ++ + +  D L+G+ N   F + L  
Sbjct: 113 LMRGREVVAVCVTISDVT-HVS-IVQREREEAVAKLQEYANRDGLTGIANRRFFEARLRD 170

Query: 125 -------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   +S++ FD+D+FKQIND FGH VGD V+  ++ ++  V       GR GG
Sbjct: 171 EFTRWQRYGGDMSMLLFDLDHFKQINDQFGHGVGDTVLRVMAQRVAGVVRAQDTFGRFGG 230

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STI 236
           EEFA     +   +A ++A  +R++IE + + +  G S+ +T S G A      P    +
Sbjct: 231 EEFALLLPCTPLDDAMLVAEKIRRVIEETPVEL-IGTSVPVTASLGGASAREGLPAYDVL 289

Query: 237 IYRADQALYVAKKSGRNRVVCF 258
           I  AD ALY AK+ GRN  V F
Sbjct: 290 INEADAALYRAKRQGRNCAVAF 311


>gi|253996162|ref|YP_003048226.1| diguanylate cyclase [Methylotenera mobilis JLW8]
 gi|253982841|gb|ACT47699.1| diguanylate cyclase [Methylotenera mobilis JLW8]
          Length = 601

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 90/175 (51%), Gaps = 10/175 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           ++EL    + I Q++  D L+G LN      +L         +N  L +   DID+FK++
Sbjct: 419 IEELTAELDYIGQVAHQDYLTGALNRRGMDEALEREFSRADRHNTTLCVAMLDIDHFKKL 478

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRK 201
           ND  GH  GD+ +  L+  L  V  T   + R GGEEF      + + EA  ++    R+
Sbjct: 479 NDTLGHVTGDEALTHLAKVLKEVLRTTDVLARYGGEEFIIILPATPQDEAVKVITRVQRE 538

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +N    + +   + IT SAG+AER   E    +I RAD ALY AK SGRNRV+
Sbjct: 539 LTKN--FFMHNNERVLITFSAGVAERVGDESPEVLIPRADAALYKAKHSGRNRVI 591


>gi|228942560|ref|ZP_04105095.1| GGDEF domain protein [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228975493|ref|ZP_04136048.1| GGDEF domain protein [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228982126|ref|ZP_04142418.1| GGDEF domain protein [Bacillus thuringiensis Bt407]
 gi|228777664|gb|EEM25939.1| GGDEF domain protein [Bacillus thuringiensis Bt407]
 gi|228784287|gb|EEM32311.1| GGDEF domain protein [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228817153|gb|EEM63243.1| GGDEF domain protein [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326943212|gb|AEA19108.1| GGDEF family protein [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 351

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 105/206 (50%), Gaps = 18/206 (8%)

Query: 63  YILVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHS 116
           YIL  ++S+V++ +  S+  GYI+      +L+  ELF    ++ Q + ID L+GL N  
Sbjct: 147 YILFNDISVVVLYLISSITTGYITFVSTNYVLQSNELF---QKMKQYATIDALTGLGNVR 203

Query: 117 AF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            F       IS+    N+ L ++  DID+FK +ND +GHP GD+V+  +   L      P
Sbjct: 204 QFDLEMNHHISNKNMKNDSLCLLLIDIDHFKYVNDTYGHPAGDEVLKQVGCILRETSQFP 263

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               R GGEEFA             +   +R  +E+    +  G  I IT+S G++E  +
Sbjct: 264 DLAFRKGGEEFALLIPNKGLAYGICMGEQIRTAVESHPFQLLDGTKIKITVSVGVSE--Y 321

Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255
           +      I  AD ALY +K++GRN+V
Sbjct: 322 EGSSEQFIQAADDALYYSKRNGRNKV 347


>gi|241202885|ref|YP_002973981.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240856775|gb|ACS54442.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 392

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 100/192 (52%), Gaps = 7/192 (3%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-- 124
           E+LSL +  I     +G +S ++ +    + +R+  ++  D L+GLLN  A     G+  
Sbjct: 187 EDLSLAV-CIAGMTGIGALSLALHQWRLAARHRLDAIT--DPLTGLLNRRALFDQYGTRP 243

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
                +++ FDID+FK +ND FGH  GD+V+   S +L     T     RLGGEEF    
Sbjct: 244 MGTTTAVIVFDIDHFKSVNDRFGHAAGDRVLNVFSGELSAHCRTGDTAARLGGEEFVLVL 303

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQA 243
                  A + A  +R+  E  +I+I     +  T+S G+A  R       T++  AD+A
Sbjct: 304 KEIMPGRAELTAERIRRAFEAREIHIDD-EVLTCTVSVGVAPGRSKSLDFDTMLSAADKA 362

Query: 244 LYVAKKSGRNRV 255
           LYVAK++GRNRV
Sbjct: 363 LYVAKRAGRNRV 374


>gi|262394290|ref|YP_003286144.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio sp.
           Ex25]
 gi|262337884|gb|ACY51679.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio sp.
           Ex25]
          Length = 280

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 9/164 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S++SR D L+GL N + +  SL          +   S+V FDID+FK++ND +GHP GD
Sbjct: 112 LSEISRKDGLTGLFNRAYWEQSLKEEFAHLKVIDGPCSLVIFDIDHFKKVNDTYGHPTGD 171

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +VI   S  L     +    GR GGEEF      +++++A   A  LRK IE   + +  
Sbjct: 172 EVIRRTSSLLRKTARSSDVCGRFGGEEFTVLLPHTNQEQACYFAERLRKRIEQEIVKVED 231

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
              I+ TIS G+ E + + E  +  +  AD ALY AK++GRN+ 
Sbjct: 232 F-LINYTISIGVCEYKPYFETHTQWLKSADAALYRAKENGRNQT 274


>gi|264680486|ref|YP_003280396.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262211002|gb|ACY35100.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 519

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 94/180 (52%), Gaps = 11/180 (6%)

Query: 85  ISGSILKELFISYNRISQLSR---IDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDY 138
           +  ++LK L +    I++L      D L+GL N     A IS+  +     S++  DID+
Sbjct: 334 LKKAMLKGLGLLQRNITKLREDVNTDPLTGLGNRRHLEAAISAFQTQALPFSVIAIDIDH 393

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND FGH  GD+V+  L+  +  V        R+GGEEF     G+  + AA  A  
Sbjct: 394 FKHINDGFGHDTGDEVLRQLARTMREVSRVDDLPCRVGGEEFLLLLPGTGLEAAAHAAER 453

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           LR+++E  +I     P  HITIS G+A     +P I  +  +AD  LY AK+ GRNRV+ 
Sbjct: 454 LRQLVEKMEIP----PVGHITISLGVAHWPDSDPDIKAVFQQADAMLYAAKRGGRNRVMV 509


>gi|209527055|ref|ZP_03275570.1| response regulator receiver modulated diguanylate cyclase
           [Arthrospira maxima CS-328]
 gi|209492483|gb|EDZ92823.1| response regulator receiver modulated diguanylate cyclase
           [Arthrospira maxima CS-328]
          Length = 322

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 92/176 (52%), Gaps = 9/176 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +   + +L+  D L+G+ N    ++           YN   S++  DID+FK IND
Sbjct: 142 ELKQALVELEKLATTDPLTGIANRRHLLTLAEREFQRTHRYNNPFSVLMIDIDHFKLIND 201

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH +GD+ +  ++D  V         GR GGEEF      +   EA ++A  +R+ I 
Sbjct: 202 NYGHNIGDEALKIMADVTVNALRKVDIFGRFGGEEFVVFLPETQADEALLVAERIREAIA 261

Query: 205 NSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + I +    +IHIT+S G+      +  +  ++  AD+ALY AKK GRN+VV ++
Sbjct: 262 TTPIYVDDQ-TIHITVSIGVTIYESSEMSLDGLLMEADKALYDAKKQGRNQVVIYT 316


>gi|269968597|ref|ZP_06182599.1| hypothetical protein VMC_40290 [Vibrio alginolyticus 40B]
 gi|269826808|gb|EEZ81140.1| hypothetical protein VMC_40290 [Vibrio alginolyticus 40B]
          Length = 320

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 9/164 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S++SR D L+GL N + +  SL          +   S+V FDID+FK++ND +GHP GD
Sbjct: 152 LSEISRKDGLTGLFNRAYWEQSLKDEFAHLKVIDGPCSLVIFDIDHFKKVNDTYGHPTGD 211

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +VI   S  L     +    GR GGEEF      +++++A   A  LRK IE   + +  
Sbjct: 212 EVIRRTSALLRKTARSSDICGRFGGEEFTVLLPHTNQEQACYFAERLRKRIEQEIVKVED 271

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
              I+ TIS G+ E + + E  +  +  AD ALY AK++GRN+ 
Sbjct: 272 F-LINYTISIGVCEYKPYFETHTQWLKSADAALYRAKENGRNQT 314


>gi|15807483|ref|NP_296218.1| GGDEF family protein [Deinococcus radiodurans R1]
 gi|6460320|gb|AAF12040.1|AE002079_5 GGDEF family protein [Deinococcus radiodurans R1]
          Length = 356

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 84/161 (52%), Gaps = 12/161 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q +R+D L+G+   +A  S L          N  LS++  DID+FKQ+ND  GH  GD V
Sbjct: 200 QAARLDALTGVAGRAALESELQRALDTARRTNSPLSVILADIDHFKQVNDVHGHGAGDDV 259

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   + +L    G    VGR GGEEF A   G +  +A  LA  LR+ + +++I      
Sbjct: 260 LRAFAKRLRRNVGGAGMVGRWGGEEFMAVLPGVARDDALALAERLRQAVSDTEI-----A 314

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + +T S G+A     + ++ +  RAD+ LY AK  GRN V
Sbjct: 315 GLPVTASFGVAALRPDDDLNQLFSRADERLYDAKNGGRNTV 355


>gi|103487180|ref|YP_616741.1| diguanylate cyclase with PAS/PAC sensor [Sphingopyxis alaskensis
           RB2256]
 gi|98977257|gb|ABF53408.1| diguanylate cyclase with PAS/PAC sensor [Sphingopyxis alaskensis
           RB2256]
          Length = 594

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 88/162 (54%), Gaps = 11/162 (6%)

Query: 102 QLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N           ++   ++   L++  FDID+FK+IND  GH  GD+V
Sbjct: 432 RVANTDMLTGLPNRRHTLTFLEEAMAGARAHGAPLAVAIFDIDHFKRINDTHGHATGDQV 491

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           I  ++ +   V      +GR+GGEEF      +S     I+A  +RK +EN    +  G 
Sbjct: 492 IQRVAQRARSVLRDEDMIGRIGGEEFVCILQRASALSGEIVAERVRKAVEN---GVGQGD 548

Query: 215 SI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +   T+S G+A    ++ I  +++RADQALY AK+ GRNR+
Sbjct: 549 GLPPTTVSIGLAVYDGEQDIEELLHRADQALYAAKREGRNRM 590


>gi|253998573|ref|YP_003050636.1| diguanylate cyclase [Methylovorus sp. SIP3-4]
 gi|253985252|gb|ACT50109.1| diguanylate cyclase [Methylovorus sp. SIP3-4]
          Length = 487

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 94/172 (54%), Gaps = 9/172 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I  ++  D L+ L N  AF       +     Y + L+++  DID+FKQIND  GH  G
Sbjct: 317 QIETMATTDSLTHLPNRKAFEIIIDVIMQERIRYGKDLAVILLDIDHFKQINDRHGHFAG 376

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++  +     +  FV R GGEEF       +E+ A +LA  +R+ +E   +   
Sbjct: 377 DQVLTEVALIIRSCLRSVDFVCRWGGEEFLILLKDCNERNARLLAEKIRETLETRPVAHK 436

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + P IH+T S G+A   + E I  ++ RAD A+Y AK  GRN+V+ FS+ +N
Sbjct: 437 NVP-IHLTASLGVAMVQNGERIEQVLERADYAMYQAKALGRNQVI-FSNFKN 486


>gi|229106000|ref|ZP_04236621.1| GGDEF domain protein [Bacillus cereus Rock3-28]
 gi|229118904|ref|ZP_04248251.1| GGDEF domain protein [Bacillus cereus Rock1-3]
 gi|228664560|gb|EEL20055.1| GGDEF domain protein [Bacillus cereus Rock1-3]
 gi|228677395|gb|EEL31651.1| GGDEF domain protein [Bacillus cereus Rock3-28]
          Length = 351

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 105/206 (50%), Gaps = 18/206 (8%)

Query: 63  YILVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHS 116
           YIL  ++S+V++ +  S+  GYI+      +L+  ELF     + Q + ID L+GL N  
Sbjct: 147 YILFNDISVVVLYLISSITTGYITFVSANYVLQSNELF---QTMKQYATIDALTGLGNVR 203

Query: 117 AFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            F   +  +       N+ L ++  DID+FK +ND +GHP GD+V+  +   L  +   P
Sbjct: 204 QFDLEMNHHIGNKHMENDSLCLLLIDIDHFKYVNDTYGHPAGDEVLKQIGCILRGISTFP 263

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
             V R GGEEFA             L   +R  +E     +  G  I IT+S GI+E  +
Sbjct: 264 DLVFRKGGEEFALLIPQRGLSYGIHLGEQIRIAVEKHSFQLLDGTKIKITVSVGISE--Y 321

Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255
           K     +I  AD ALY +K++GRN+V
Sbjct: 322 KGSQEQLIQAADDALYYSKRNGRNQV 347


>gi|13470977|ref|NP_102546.1| hypothetical protein mlr0825 [Mesorhizobium loti MAFF303099]
 gi|14021720|dbj|BAB48332.1| mlr0825 [Mesorhizobium loti MAFF303099]
          Length = 418

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 87/169 (51%), Gaps = 14/169 (8%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-YNEKLSIVF-----FDIDYFKQINDNFGHPVGDKVI 155
           +L+  D L+ + N  AF   +   YN    I+F      DID FK IND +GHPVGDK+I
Sbjct: 237 RLADTDPLTQIRNRRAFDKEITRIYNSNKGILFNALILADIDRFKDINDRYGHPVGDKII 296

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-----SQINI 210
             +++         MFV R GGEEFA    G+SE     +A  +R +IE      SQ  +
Sbjct: 297 QIIAEIFQTSIRGDMFVARTGGEEFALIIEGASEDATYEIAERIRALIEQTPFTSSQTGM 356

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + G    +T+S GI      E    +  +AD+ALY +K SGRNRV   S
Sbjct: 357 NYGT---VTVSMGICMASEAEGPEDLYTKADRALYRSKVSGRNRVTKHS 402


>gi|158339127|ref|YP_001520304.1| GGDEF family protein [Acaryochloris marina MBIC11017]
 gi|158309368|gb|ABW30985.1| GGDEF family protein [Acaryochloris marina MBIC11017]
          Length = 294

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 89/177 (50%), Gaps = 21/177 (11%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQ 141
           IL+E F    R+++L+  D L+ L+N   F++ L  Y          LSI+  D+DYFK 
Sbjct: 119 ILQENF----RLTELAYTDSLTELMNRRGFLTQLQQYQSFAARTQRPLSILLLDVDYFKT 174

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            ND++GH  GD+ +  +S  L          GR GGEEF      S +Q +  +A  LR+
Sbjct: 175 FNDSYGHSAGDQALVLISGILKTNLRRSDLAGRYGGEEFVVCLPDSDQQGSFTVAESLRQ 234

Query: 202 IIENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRN 253
            ++N        P   ITIS G+A     +    +    +I  ADQALY +K+SGRN
Sbjct: 235 AVDN-----YGWPIQEITISVGVATAIADQDSTYKTAKELINEADQALYYSKQSGRN 286


>gi|90423253|ref|YP_531623.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
 gi|90105267|gb|ABD87304.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
          Length = 401

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 122/250 (48%), Gaps = 27/250 (10%)

Query: 23  SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL 82
           +P   +I +S+  ++ +  ++ ++   +     TP      +LV      ++++   + +
Sbjct: 139 TPRQTVIAWSLM-AVGVGALLLLSERPISLPMATPLERFATMLV-----FVLALGRCMFI 192

Query: 83  GYISGSILKELF-------ISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEK 128
           G +S ++ + L+        +Y RI +L+ +D L+G  N    +  L             
Sbjct: 193 GVVSSALRERLYRRGVELKATYKRIEELAELDELTGASNRRCIMRMLDDEILRARRTAMP 252

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV---GRLGGEEFAAAAL 185
           L+I   D+D+FK+IND +GHP GD+V+   +   + +F     V   GR GGEEF     
Sbjct: 253 LTIALIDLDWFKRINDLYGHPTGDEVLRTFA---ITIFANIRNVDRFGRYGGEEFLLVLP 309

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            +++  A    + LR+I+ +   +  S   + +T+S GIA  C+ E    ++ RAD ALY
Sbjct: 310 ETTQDSAQPTLDRLRRIVADLDWSAFS-QGMTVTMSVGIASWCNNETPEALLARADDALY 368

Query: 246 VAKKSGRNRV 255
            AK  GRNRV
Sbjct: 369 EAKADGRNRV 378


>gi|303246345|ref|ZP_07332625.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
 gi|302492408|gb|EFL52280.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
          Length = 296

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 89/169 (52%), Gaps = 10/169 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS----YNEKLSIVFFDIDYFKQINDNFG 147
           EL +    + +LS  D L+GL N     + LG      +  +S++  DID+FK+IND FG
Sbjct: 130 ELALKNRELMRLSTTDMLTGLANRQRLDALLGQALDDRSGPISLMMLDIDHFKRINDRFG 189

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           HP GD+ +A L++ L         +GR GGEEF      +   +A +LA  LR+ +   +
Sbjct: 190 HPAGDRTLAALAEALRQATPEGCTLGRWGGEEFLILCRETMLADAYLLAEALRERVLELE 249

Query: 208 INISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +     P +  ++ S G+ E    E    ++ R DQALY AK+ GRNRV
Sbjct: 250 L-----PDVGRLSCSFGVVEAAPSETAERLMSRVDQALYAAKELGRNRV 293


>gi|170724885|ref|YP_001758911.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169810232|gb|ACA84816.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           woodyi ATCC 51908]
          Length = 631

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 99/181 (54%), Gaps = 13/181 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           L+EL  +  ++++ +  D L+G+ N +AF   L +           ++I+  DID FK I
Sbjct: 441 LRELNEANQKLTEQATTDSLTGVKNRAAFDKRLQAEGRLSRRQQTPMAILMLDIDRFKSI 500

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           NDN+GH  GD+++ F++  L      P   V R GGEEFA     + +  A  +A  +RK
Sbjct: 501 NDNYGHLAGDQILRFIAQTLKEKLKRPADLVSRFGGEEFAIILPNTDQPGAVQVAEQIRK 560

Query: 202 IIENSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            I +  I+  +   I +TIS G++    +   +P + ++ +AD+ALY AK  GRNRV+ +
Sbjct: 561 TIYDLPISWENI-DIPLTISIGVSSEIMQSETQP-TKLLEQADKALYRAKNDGRNRVMVY 618

Query: 259 S 259
           +
Sbjct: 619 T 619


>gi|15894105|ref|NP_347454.1| diguanylate cyclase/phosphodiesterase [Clostridium acetobutylicum
           ATCC 824]
 gi|15023708|gb|AAK78794.1|AE007597_7 Diguanylate cyclase/phosphodiesterase domain (GGDEF) containing
           protein [Clostridium acetobutylicum ATCC 824]
 gi|325508232|gb|ADZ19868.1| Diguanylate cyclase/phosphodiesterase domain (GGDEF) containing
           protein [Clostridium acetobutylicum EA 2018]
          Length = 571

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 84/156 (53%), Gaps = 12/156 (7%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N +         IS    Y +  +I+  DIDYFK IND +GH VGD V++ +S
Sbjct: 419 DNLTGMYNRNHIEEILDKEISDYIRYKKLFTILMMDIDYFKSINDKYGHLVGDNVLSVVS 478

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + ++       FVGR GGEEF      + ++EA I+A  +R  IE    N+     I +T
Sbjct: 479 NAIIRNLRKEDFVGRYGGEEFIVVFPNTDKKEAFIIAERIRTDIE----NLLFENGIRVT 534

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           IS GI E          I+ AD+ LY AK+SGRNR+
Sbjct: 535 ISGGIYENSSFSK-KVCIHNADRLLYYAKESGRNRI 569


>gi|213027058|ref|ZP_03341505.1| hypothetical protein Salmonelentericaenterica_33399 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 171

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 5/163 (3%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+  ++  D L+G  N  +  S LG      E  +++  D+DYFK  NDN+GH  GD  +
Sbjct: 8   RLDVMAHQDALTGTANRRSMESFLGDALRQTEPFALIMLDVDYFKNYNDNYGHQAGDACL 67

Query: 156 AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSG 213
           A ++  +     TP   V R GGEEF      SS  EAA++A  ++  + E +  +++S 
Sbjct: 68  AKVACVVKRSIRTPADLVARYGGEEFVVVLPSSSLNEAALVAKRIQTNLRETALPHVASA 127

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S  +T+S GI      + ++ II RAD+ALY AK+ GRNR V
Sbjct: 128 VSETVTVSMGITLSTAGDTVTGIIARADEALYRAKQQGRNRWV 170


>gi|209808967|ref|YP_002264505.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238]
 gi|208010529|emb|CAQ80897.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238]
          Length = 482

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 105/215 (48%), Gaps = 20/215 (9%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYI--SGSILKELFISYNRISQLSRIDCL 109
           Y   TP Y         +++ I+S+ + LL  +I  +    + L       S+L+  D L
Sbjct: 276 YYWFTPLY---------ITIFIVSMLMILLSFFIFKNAYYFQTLIYQAEHYSKLALYDEL 326

Query: 110 SGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +G+ N   F   + S+ E+        S+V FDID+FK IND +GH  GD+V+   S   
Sbjct: 327 TGVCNRRCFEKVMSSFLEEYKQKGVVFSLVIFDIDFFKDINDTYGHDRGDEVLRVFSKTC 386

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             V        RLGG+EF       + QEAA++  +L   I    +  S G  + I+ S 
Sbjct: 387 SSVMSPEDIFARLGGDEFVMIMANKTSQEAALIMTELLHQIRRLSVMTSKG-ELKISSSI 445

Query: 223 GIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           GI + +   +  S ++ RAD+ALY  K+SGRN VV
Sbjct: 446 GITQMKTKNDDFSVLLERADKALYQVKRSGRNGVV 480


>gi|182418449|ref|ZP_02949743.1| ggdef domain protein [Clostridium butyricum 5521]
 gi|237666543|ref|ZP_04526528.1| diguanylate cyclase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377831|gb|EDT75375.1| ggdef domain protein [Clostridium butyricum 5521]
 gi|237657742|gb|EEP55297.1| diguanylate cyclase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 1758

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 11/164 (6%)

Query: 104  SRIDCLSGLLNHSAFISSL------GSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
            S +D L+ + N   F  SL       S+N  + +++ FDID FK +ND +GH VGD+V+ 
Sbjct: 1420 STLDKLTSVYNRKYFEESLVYLLEKSSFNNSEFAVIMFDIDDFKGVNDKYGHQVGDEVLI 1479

Query: 157  FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             L+ ++    G    +GR GGEEF        + +A  +A  +R  +E+++I    G   
Sbjct: 1480 KLTKEVKRSIGRSDIIGRYGGEEFVVLLPSVDKLKAINMAEKIRNNVEDARI---LGDKR 1536

Query: 217  HITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFS 259
             +TIS GIA   H+   S  I+ RADQALY+AK  G+NR V + 
Sbjct: 1537 KVTISIGIAMSGHERINSEEIVNRADQALYMAKHEGKNRYVLWD 1580


>gi|90420315|ref|ZP_01228223.1| putative diguanylate cyclase (GGDEF domain) [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335649|gb|EAS49399.1| putative diguanylate cyclase (GGDEF domain) [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 395

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 102/201 (50%), Gaps = 13/201 (6%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G  + LV   ++++I ++  L++  + G   + L        +LS  D L+G+ N  AF 
Sbjct: 181 GFLFTLVMTQAILMIGVSTYLVIAMVRGRHEQSL-------RRLSETDFLTGIDNRRAFT 233

Query: 120 SSLGSY-NE----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           +   +  N+     ++++ FD+D FK+IND+ GH  GD+VI    D             R
Sbjct: 234 TKATALLNDADAGDVALLLFDLDRFKKINDDHGHGCGDEVIKLFVDSTADHLRPTDVFAR 293

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
           LGGEEFAA      + E A++A  + +   N Q     G SI  T+SAG+A       ++
Sbjct: 294 LGGEEFAALVRRRDKHEPAVIAKAIVRGFAN-QARTVGGRSIAATVSAGVATNEANRDLN 352

Query: 235 TIIYRADQALYVAKKSGRNRV 255
            ++  ADQALY AK  GR+RV
Sbjct: 353 GLLTAADQALYRAKSMGRDRV 373


>gi|299532954|ref|ZP_07046341.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298719178|gb|EFI60148.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 519

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 94/180 (52%), Gaps = 11/180 (6%)

Query: 85  ISGSILKELFISYNRISQLSR---IDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDY 138
           +  ++LK L +    I++L      D L+GL N     A IS+  +     S++  DID+
Sbjct: 334 LKKAMLKGLGLLQRNITKLREDVNTDPLTGLGNRRHLEAAISAFQTQALPFSVIAIDIDH 393

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND FGH  GD+V+  L+  +  V        R+GGEEF     G+  + AA  A  
Sbjct: 394 FKHINDGFGHDTGDEVLRQLARTMREVSRVDDLPCRVGGEEFLLLLPGTGLEAAAHAAER 453

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           LR+++E  +I     P  HITIS G+A     +P I  +  +AD  LY AK+ GRNRV+ 
Sbjct: 454 LRQLVEKMEIP----PVGHITISLGVAHWPDSDPDIKAVFQQADAMLYAAKRGGRNRVMV 509


>gi|218463098|ref|ZP_03503189.1| hypothetical protein RetlK5_28330 [Rhizobium etli Kim 5]
          Length = 392

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 98/192 (51%), Gaps = 7/192 (3%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-- 124
           E+LSL +  I     +G +S ++ +    + +R+  ++  D L+GLLN  A     G+  
Sbjct: 187 EDLSLAV-CIAGMTGIGALSLALHQWRLAARHRLEAIT--DPLTGLLNRRAVFDQYGTRP 243

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
                +++ FDID+FK +ND +GH  GD+VI   +D+L           RLGGEEFA   
Sbjct: 244 MGSTAAVIVFDIDHFKSVNDRYGHAAGDRVITVFADELTAHCRPGDTAARLGGEEFALVL 303

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQA 243
                  A + A  +R+  E  +I I  G  +  T+S G+A  R        ++  AD+A
Sbjct: 304 KEIMPGRAELTAERIRRAFEAREIPI-DGDVLKCTVSVGVAPGRSTPLDFDAMLSAADKA 362

Query: 244 LYVAKKSGRNRV 255
           LY AK+ GRNRV
Sbjct: 363 LYAAKRGGRNRV 374


>gi|222148263|ref|YP_002549220.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221735251|gb|ACM36214.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 420

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 83/164 (50%), Gaps = 8/164 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           + QLSR D L+G LN    I ++G      + +  L+++ FD+DYFK IND FGH  GD 
Sbjct: 212 LKQLSRTDPLTGALNRRGLIETVGELKHTVARDRLLALLVFDLDYFKHINDTFGHQAGDT 271

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V++  +       G      R GGEEF A    +  ++AA +A  +R +I ++ I    G
Sbjct: 272 VLSSFAQMTGGALGNDAIFARSGGEEFCAVMAVADLRQAAGVAERIRYMIASTPITTEQG 331

Query: 214 PSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             + +T S G+ A         T + +AD  LY AK  GRNR  
Sbjct: 332 -VVRLTTSIGLSAATVEAFDFDTAMRQADHGLYTAKADGRNRTA 374


>gi|224373181|ref|YP_002607553.1| diguanylate cyclase [Nautilia profundicola AmH]
 gi|223589831|gb|ACM93567.1| diguanylate cyclase [Nautilia profundicola AmH]
          Length = 470

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 113/207 (54%), Gaps = 10/207 (4%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLS 110
           F + + P   +E +   N S   + I + L+  ++ G +L     +Y+++ + S+ID L+
Sbjct: 274 FMLSVIPLDKIETLNEINNSYNTLIIIVFLIYVFLLGVML--FLYNYSKMKRNSQIDYLT 331

Query: 111 GLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
            +LN S  +S + + ++  S++  D+D+FKQIND +GH VGD+++    D +        
Sbjct: 332 DILNRSGCLSKIKALDD-YSVLVLDVDHFKQINDTYGHNVGDEILKRFVDVVRNTIRKND 390

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
              R GGEEF      + ++ A ++A  +RK +EN+  +     ++ IT+S G+A++  +
Sbjct: 391 IFCRWGGEEFVIILPDTDKETAKLVAEKIRKTVENTDFD-----NLKITVSIGVAQK--E 443

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVC 257
           +  +     AD  LY AK+ GRNRVV 
Sbjct: 444 KNFNETFKIADMKLYEAKELGRNRVVA 470


>gi|87122912|ref|ZP_01078778.1| sensory transduction/ GGDEF family protein [Marinomonas sp. MED121]
 gi|86161812|gb|EAQ63111.1| sensory transduction/ GGDEF family protein [Marinomonas sp. MED121]
          Length = 416

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 9/167 (5%)

Query: 99  RISQLSRIDCLSGLLNH------SAFISSLG-SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++ L+  D L+GL N       SA I  L  S    L+ +  D+D FK++ND FGH +G
Sbjct: 248 KLTLLAMTDSLTGLFNRRFLMEKSAQIFDLQQSLKLPLACILIDLDKFKRVNDKFGHNIG 307

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++   S++   +   P  +GR GGEEF      ++ ++A  LAN LR++ +   I   
Sbjct: 308 DEILKAFSNRCQRMIQEPHIIGRYGGEEFLVVMPNTNPEDAVTLANTLRQMCDEEAIETG 367

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +G  + +T+SAGI+           ++ RAD+ LY AK  GRNRVV 
Sbjct: 368 AG-DLKVTMSAGISTLNTDDTHFDQLVDRADKRLYEAKALGRNRVVS 413


>gi|300716401|ref|YP_003741204.1| GGDEF domain protein [Erwinia billingiae Eb661]
 gi|299062237|emb|CAX59354.1| GGDEF domain protein [Erwinia billingiae Eb661]
          Length = 389

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 117/225 (52%), Gaps = 30/225 (13%)

Query: 56  TPFYGL-------EYILVENLSLVIISITISLL--------LGYISGSILKELFISYNRI 100
           +PF+G         Y+++E++ +++I +T ++L        + Y + S+L  L   +NR 
Sbjct: 174 SPFHGAIGGSTFSVYVILESI-MMVIGLTFTMLAMVNERTQIKYKNASLLDPLTGVWNRR 232

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           +   + + L+   + +A         + L+I+ FD+D+FK IND FGH  GD V+     
Sbjct: 233 ALFEQGEALARRCDKTA---------QPLTIMLFDLDHFKSINDRFGHNQGDLVLIDFCR 283

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
           Q+           RLGGEEF AA L +SE++A  +A  +R+ +E+S      G +  ++I
Sbjct: 284 QVQQSLPAQSHFARLGGEEF-AAILVASERDALRIAEKIRQTVEHSH---PEGVNYTVSI 339

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
               A+  + + I T++  AD+ALY AK  GRNRV  F   E N 
Sbjct: 340 GVATAQGAYHQ-IPTLMVAADEALYQAKALGRNRVTRFVATEANA 383


>gi|91223751|ref|ZP_01259015.1| hypothetical protein V12G01_18442 [Vibrio alginolyticus 12G01]
 gi|91191243|gb|EAS77508.1| hypothetical protein V12G01_18442 [Vibrio alginolyticus 12G01]
          Length = 320

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 9/164 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S++SR D L+GL N + +  SL          +   S+V FDID+FK++ND +GHP GD
Sbjct: 152 LSEISRKDGLTGLFNRAYWEQSLKDEFAHLKVIDGPCSLVIFDIDHFKKVNDTYGHPTGD 211

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +VI   S  L     +    GR GGEEF      +++++A   A  LRK IE   + +  
Sbjct: 212 EVIRRTSALLRKTARSSDICGRFGGEEFTVLLPHTNQEQACYFAERLRKRIEQEIVKVED 271

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
              I+ TIS G+ E + + E  +  +  AD ALY AK++GRN+ 
Sbjct: 272 F-LINYTISIGVCEYKPYFETHTQWLKSADAALYRAKENGRNQT 314


>gi|86748818|ref|YP_485314.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
 gi|86571846|gb|ABD06403.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
          Length = 753

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 105/219 (47%), Gaps = 37/219 (16%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISY---------NRISQLSR-------------- 105
           L+L +  IT S LLG I    L    + Y         +R+ QL R              
Sbjct: 506 LTLPVAGITASRLLGIIITLQLALTALFYFFGRERGVRDRVQQLLRSELQERAAALARQA 565

Query: 106 -IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
             D L+GL N   F       ++ +    + LS+V FD+D+FK++ND +GHP GD+V+  
Sbjct: 566 TTDPLTGLHNRLRFNEGLAQELARVRRTGQPLSLVMFDVDHFKEVNDRYGHPTGDQVLIR 625

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSI 216
           LS            + R GGEEFA   + +    A  +A +LR+++  +  + I S    
Sbjct: 626 LSQTAAAQLRQTDLLARWGGEEFAILLVDADLHAAVEVAENLRRLVARTPFDQIGS---- 681

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +T S G+AE    E   +++ RAD ALY AK +GRNRV
Sbjct: 682 -VTASFGVAECRPDESADSLLERADAALYRAKSNGRNRV 719


>gi|192362321|ref|YP_001981676.1| GGDEF domain-containing protein [Cellvibrio japonicus Ueda107]
 gi|190688486|gb|ACE86164.1| GGDEF domain protein [Cellvibrio japonicus Ueda107]
          Length = 325

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 117/242 (48%), Gaps = 22/242 (9%)

Query: 27  FMIYFSIFFSIFIATVI--FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           F ++ +IF ++F+   +   IAN+ L    L P       +V+ +++ I S+  S  L Y
Sbjct: 93  FWVFPAIFANVFLLRALNALIANL-LAISALVPLALRLPNMVDAMAM-IASLLFSTSLAY 150

Query: 85  I------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDY 138
           +          L E   S + +++L+    L+  L     +          +++ FD+DY
Sbjct: 151 VFALQTERQRALLEKSASQDPLTELANRRALNQTLKQC--LDDFQRNQTPATLIIFDLDY 208

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQIND FGH +GD+++  L+  +     T     R GGEEF   A  +  +EA + A  
Sbjct: 209 FKQINDKFGHSIGDEILQNLAQLITRRIRTTDRAFRFGGEEFIVLARNTQLEEARLFAEQ 268

Query: 199 LRKIIENSQINIS---SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           LR       +NIS   + P   IT S G AE    E +     RAD+A+Y AK+ GRNRV
Sbjct: 269 LR-------VNISLELNAPEGEITASFGCAELKPNETLDGWFNRADKAVYQAKQLGRNRV 321

Query: 256 VC 257
           VC
Sbjct: 322 VC 323


>gi|300311237|ref|YP_003775329.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1]
 gi|300074022|gb|ADJ63421.1| GGDEF domain containing protein [Herbaspirillum seropedicae SmR1]
          Length = 585

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 88/166 (53%), Gaps = 10/166 (6%)

Query: 100 ISQL---SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           I+QL   S  D L+G+LN  AF       ++    Y  +L++V FDID+FKQIND++GH 
Sbjct: 406 ITQLQTSSNTDFLTGVLNRRAFFTHGQQQMTVAKRYGRELAVVLFDIDHFKQINDSYGHQ 465

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD ++  ++  +  +      + R GGEEF      SS  +AA  +  LR  +   +  
Sbjct: 466 AGDAILRGVAQSVSQLLRKVDVLARYGGEEFIILLPESSLLQAAAASEKLRAALAAGEFE 525

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           I  G  I +T S G+A       +  +I +AD ALY AKK GRNRV
Sbjct: 526 IDGGRRIRVTASFGVAAENGGPGLEHLIKQADIALYRAKKLGRNRV 571


>gi|119476786|ref|ZP_01617096.1| response regulator protein with GGDEF domain [marine gamma
           proteobacterium HTCC2143]
 gi|119450042|gb|EAW31278.1| response regulator protein with GGDEF domain [marine gamma
           proteobacterium HTCC2143]
          Length = 201

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 93/174 (53%), Gaps = 8/174 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           KE+ +  + +  L+RID L+ + N  AF       +S        LS++ FD+D FK+IN
Sbjct: 24  KEIALREHELEILTRIDPLTNISNRRAFYEVAGKLLSGFKRNKLPLSLLLFDVDNFKKIN 83

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD V+  L++++     T     R GGEEF       +  E  +++  +R ++
Sbjct: 84  DVYGHRYGDVVLKTLANEVRHSIRTTDCFARFGGEEFIIIFPQINADELLLISEKIRHVL 143

Query: 204 ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +NS++    G  I+ T+S G    R     +  +I RAD+A+Y AKK GRNRV+
Sbjct: 144 QNSEVKTDKGDLINYTVSIGATTFRETDGNLDMVIQRADEAMYEAKKGGRNRVI 197


>gi|317152067|ref|YP_004120115.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942318|gb|ADU61369.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
          Length = 1051

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/166 (36%), Positives = 90/166 (54%), Gaps = 9/166 (5%)

Query: 99   RISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            R+ +L+  D L+GL N   F+            Y   L+++  DID+FK++ND  GH VG
Sbjct: 885  RLHELATTDSLTGLFNRRRFMELAEREFMRTKRYQGALTMLMMDIDHFKRVNDTHGHGVG 944

Query: 152  DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            D+V+  L+            +GRLGGEEF      +    A  +A  LR+ IE + +   
Sbjct: 945  DEVLRELARISRTALRELDILGRLGGEEFGVLLPETDAGPAMEVAQRLRRAIEKASMATD 1004

Query: 212  SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            +G ++ IT+S G A   +  E + T++ RAD ALY AK+SGRN+VV
Sbjct: 1005 AG-TLRITVSIGAATSNNDAETVETLLKRADVALYEAKQSGRNKVV 1049


>gi|307299825|ref|ZP_07579613.1| diguanylate cyclase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306914526|gb|EFN44924.1| diguanylate cyclase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 311

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 88/173 (50%), Gaps = 10/173 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           KEL  +   I +L   D L+GL N   F       I SL S  + LSI+  DID FK++N
Sbjct: 141 KELQAANKEIERLMNCDPLTGLSNRREFMNRLDKEIESLCSTCKPLSIIMADIDDFKRVN 200

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GHP GD+V+   +D L  +        R GGEEF      ++ +EA  +A ++RK  
Sbjct: 201 DTRGHPEGDRVLQLFADVLNEIISPRRTTVRYGGEEFIVMLPETTSEEATEIAEEVRK-- 258

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            N +        + +T S G+A     +  S+I+ R D ALY AK  G+NRVV
Sbjct: 259 -NFERETEKKLGLTVTASFGVATFKPSDTKSSILKRVDDALYSAKSGGKNRVV 310


>gi|288942659|ref|YP_003444899.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
 gi|288898031|gb|ADC63867.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
          Length = 342

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 96/179 (53%), Gaps = 10/179 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFK 140
           +G+ ++ L        + +R+D L+ + N   F  +L     G  +E   ++  D+D+FK
Sbjct: 164 AGAQVERLTRELEESERRARLDSLTKIPNRRGFDEALAQSLSGGDDEPTCLMLMDLDHFK 223

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDL 199
           ++ND +GHP+GD+V+  +   L  +    +FV R GGEEF  A +   E EAA +LA  +
Sbjct: 224 RLNDTYGHPMGDRVLEIVGTVLAKLQSDHVFVARYGGEEF--AVIVHDELEAAQMLAEQI 281

Query: 200 RKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R+ +   QI   S       IT+S G+      E  +++I RAD  LY AK+ GR+RVV
Sbjct: 282 RRQVAALQIRRKSTQDTIGAITVSIGLTRFRPGETAASLIERADTGLYRAKEGGRDRVV 340


>gi|27379458|ref|NP_770987.1| hypothetical protein bll4347 [Bradyrhizobium japonicum USDA 110]
 gi|27352610|dbj|BAC49612.1| bll4347 [Bradyrhizobium japonicum USDA 110]
          Length = 355

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 95/189 (50%), Gaps = 19/189 (10%)

Query: 93  LFISYNRISQLSR----------IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFD 135
           L +S N IS L +           D L+GL N   F   +G       +  E LS++ FD
Sbjct: 157 LTLSRNEISNLQQSLEAIRAESLTDPLTGLGNRKYFDRMIGMAVQSALASGEPLSLLLFD 216

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK  ND++GH  GD+V+  +   +           R GGEEFA     ++ ++A  +
Sbjct: 217 IDHFKSFNDSYGHLTGDQVLRLVGLSMKQTIKGQDITARYGGEEFAVLLPNTALRQALTV 276

Query: 196 ANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           A+ +R+ +   ++   S   I   +TIS G++     +    +I RAD  LY AK++GRN
Sbjct: 277 ADHIRRAVMAKELKKKSTGEILGRVTISVGVSMLKPGDDTDALIERADACLYAAKRNGRN 336

Query: 254 RVVCFSDIE 262
           RV+C +D E
Sbjct: 337 RVICEADPE 345


>gi|299533301|ref|ZP_07046685.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni S44]
 gi|298718831|gb|EFI59804.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni S44]
          Length = 860

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 15/180 (8%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           +S  RI QL+  D L+GL N S         I+S    +E+L+++F D+D FKQ+ND+ G
Sbjct: 413 LSRARIRQLAFYDGLTGLPNRSLLQAKADQAIASAAGNDEQLAVLFIDLDRFKQVNDSLG 472

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--N 205
           HPVGD+++  ++ +L  V  +    GRL G+EF A      + +A  +AN + ++ E   
Sbjct: 473 HPVGDELLRNVATRLQRVLRSSDIAGRLSGDEFVAVL---PQCDAEHVANTIERLQELLA 529

Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             +NI+   S+ I+ S GIA        + T+++RAD A+Y AK  GR R  CF   E N
Sbjct: 530 EPLNIAD-TSLSISASVGIAMFPMDGRDMETLVHRADMAMYQAKSKGRGR-FCFFSSEMN 587


>gi|264679607|ref|YP_003279514.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni
           CNB-2]
 gi|262210120|gb|ACY34218.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni
           CNB-2]
          Length = 868

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 15/180 (8%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           +S  RI QL+  D L+GL N S         I+S    +E+L+++F D+D FKQ+ND+ G
Sbjct: 421 LSRARIRQLAFYDGLTGLPNRSLLQAKADQAIASAAGNDEQLAVLFIDLDRFKQVNDSLG 480

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--N 205
           HPVGD+++  ++ +L  V  +    GRL G+EF A      + +A  +AN + ++ E   
Sbjct: 481 HPVGDELLRNVATRLQRVLRSSDIAGRLSGDEFVAVL---PQCDAEHVANTIERLQELLA 537

Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             +NI+   S+ I+ S GIA        + T+++RAD A+Y AK  GR R  CF   E N
Sbjct: 538 EPLNIAD-TSLSISASVGIAMFPMDGRDMETLVHRADMAMYQAKSKGRGR-FCFFSSEMN 595


>gi|187477737|ref|YP_785761.1| signaling protein [Bordetella avium 197N]
 gi|115422323|emb|CAJ48847.1| putative signaling protein [Bordetella avium 197N]
          Length = 521

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 8/179 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIND 144
           ++ +++   +N++ Q S  D L+GLLN       + S   Y   +S++  DID+FK IND
Sbjct: 346 TVSRKIGTKFNQLRQDSLTDALTGLLNRRGLDEILQSEPRYGRAMSVLAVDIDHFKAIND 405

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD VI  ++  L         +GRLGGEEF      +   +A   A  +R  +E
Sbjct: 406 ELGHAAGDAVIRGIAALLRSRARASDILGRLGGEEFVVLLPNTDRAQALQAAERIRAAVE 465

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             Q    + P    T+S G+A   H+   ++ ++ RAD+ALY AK+ GRNRV   +++ 
Sbjct: 466 TFQ----AVPGGACTVSIGVAVYPHEGASLTAVLERADEALYEAKRGGRNRVCDAAEMR 520


>gi|156974523|ref|YP_001445430.1| hypothetical protein VIBHAR_02241 [Vibrio harveyi ATCC BAA-1116]
 gi|156526117|gb|ABU71203.1| hypothetical protein VIBHAR_02241 [Vibrio harveyi ATCC BAA-1116]
          Length = 320

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 91/169 (53%), Gaps = 9/169 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGD 152
           +S++SR D L+GL N + +  SL     +L       S+V FDID+FK++ND +GH  GD
Sbjct: 152 LSEISRKDGLTGLFNRAYWEQSLKEEFAQLKVIEGASSLVIFDIDHFKKVNDTYGHHTGD 211

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +VI   S  L     +    GR GGEEF      +++++A   A  LRK IE   + +  
Sbjct: 212 EVIRRTSSLLRKTARSSDICGRFGGEEFTVLLPHTNQEQANYFAERLRKRIEQEIVKVEE 271

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              I+ TIS G+ E + + E  +  +  AD ALY AK+SGRN+     D
Sbjct: 272 FL-INYTISIGVCEYKSNFESHTQWLKSADAALYRAKESGRNQTCNHED 319


>gi|23014258|ref|ZP_00054084.1| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 445

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 100/201 (49%), Gaps = 16/201 (7%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQ-LSRI---DCLSGLLNHSAFISSL 122
           E  S+  +     LL  +++   LKE      R+ + L+R+   D L+G+ N   F+   
Sbjct: 245 EKCSIAPVRSPTGLLTHFVA---LKEDVTETKRLQEELTRLASQDSLTGIANRRHFLERA 301

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                  G     L+++  D+D+FK+IND +GH  GD  +  L+D            GRL
Sbjct: 302 HTEIIRAGRAKTPLAVLMLDVDHFKKINDEYGHAAGDAALKALADTCRSTLRETDLFGRL 361

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPIS 234
           GGEEF     G     A   A  LR  I  ++I I  G +I IT S G++  +  ++ I 
Sbjct: 362 GGEEFGILFPGDDLNAATEAAERLRLAIAATKITI-GGATIAITASLGLSLLQDGEKSID 420

Query: 235 TIIYRADQALYVAKKSGRNRV 255
             + RADQALYVAK++GRNR+
Sbjct: 421 AALSRADQALYVAKQAGRNRL 441


>gi|148251790|ref|YP_001236375.1| GGDEF domain-containing protein [Bradyrhizobium sp. BTAi1]
 gi|146403963|gb|ABQ32469.1| putative diguanylate cyclase (GGDEF)domain protein [Bradyrhizobium
           sp. BTAi1]
          Length = 328

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 90/172 (52%), Gaps = 11/172 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           S N+  Q +R D L+GL N  A         I S+   +E LSI+  D+D+FK+ NDN+G
Sbjct: 147 SLNKSEQRARTDTLTGLPNRRALEEFFRHAQIESM-ERDEPLSILLIDVDHFKKFNDNYG 205

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD+V+  ++  L           R GGEE  A    +  +    +A  +R+ I + Q
Sbjct: 206 HGVGDQVLRLVAKALRERVRDQDLPARYGGEELIAVLPQTDLEGCHAIAERIRRTIADCQ 265

Query: 208 INISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               S   +   IT+S G+ +    E ++ +I R D+ALY+AKK GRNRV+ 
Sbjct: 266 FTRRSTGEVLPQITVSIGVGQFQFGESMADLIDRCDRALYLAKKLGRNRVIT 317


>gi|146337355|ref|YP_001202403.1| GGDEF domain-containing protein [Bradyrhizobium sp. ORS278]
 gi|146190161|emb|CAL74153.1| putative diguanylate cyclase (GGDEF)domain [Bradyrhizobium sp.
           ORS278]
          Length = 328

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 90/172 (52%), Gaps = 11/172 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           S N+  Q +R D L+GL N  A         I ++   +E LSI+  D+D+FK+ NDN+G
Sbjct: 147 SLNKSEQRARTDTLTGLPNRRALEEFFRHAQIEAM-ERDEPLSILLIDVDHFKKFNDNYG 205

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD+V+  ++  L           R GGEE  A    +  +    +A  +R+ I + Q
Sbjct: 206 HGVGDQVLRLVAKALRERVREKDLPARYGGEELIAVLPETDLEGCTGMAERIRRTIADCQ 265

Query: 208 INISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               S   +   IT+S G+ +    E ++ +I R D+ALY+AKK GRNRVV 
Sbjct: 266 FTRRSTGEVLPQITVSIGVGQFQFGESMADLIDRCDRALYLAKKLGRNRVVT 317


>gi|78484724|ref|YP_390649.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78363010|gb|ABB40975.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Thiomicrospira crunogena XCL-2]
          Length = 540

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 89/170 (52%), Gaps = 10/170 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           N++   +  D L+GLLN  AF         S   +++ +S++  DID+FK+IND+FGH  
Sbjct: 366 NQLRDEATKDYLTGLLNRKAFFEQAEQIWLSAKEHHQPISLLMIDIDHFKRINDSFGHDA 425

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  +++           V R GGEEF        EQ     A+ L+K+I+   ++ 
Sbjct: 426 GDRVLIEVANVFSQNCREEDLVCRYGGEEFIILLENKDEQPTLEFASRLKKVIQEMSVS- 484

Query: 211 SSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCF 258
             G  I  +IS G+A     E   I T I  ADQALY AK +GRNRV  F
Sbjct: 485 EQGEVIRFSISVGVATGSALELNSIETFISHADQALYQAKANGRNRVEVF 534


>gi|308067202|ref|YP_003868807.1| HD-GYP domain protein [Paenibacillus polymyxa E681]
 gi|305856481|gb|ADM68269.1| HD-GYP domain protein [Paenibacillus polymyxa E681]
          Length = 616

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 96/175 (54%), Gaps = 10/175 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           K++F  Y  I + + +D  +GL NHS F ++L        S N  LS+   DID FK+ N
Sbjct: 230 KQMFTLYREIEEKANMDRRTGLYNHSYFENTLEAELNISRSENTPLSLALIDIDDFKKYN 289

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D+FGH  GD+++ FL + L     GT + V R GGEEF     G + ++A    N +RK 
Sbjct: 290 DHFGHLKGDQLLGFLGEFLKKETSGTHITVSRYGGEEFTLLMPGHTAEQAYETVNAIRKR 349

Query: 203 IENSQIN-ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + +S+   +   P   ++ SAGIA+ R      S ++  AD+ALY AKK G+N V
Sbjct: 350 LNDSRYEGVEIFPHGCLSFSAGIAQSRIDIYDKSQLVDLADKALYYAKKQGKNIV 404


>gi|239904985|ref|YP_002951724.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239794849|dbj|BAH73838.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 570

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 11/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           +EL      ++ LS  D L+GL N       L         Y    S++  D+D FK +N
Sbjct: 390 RELDAKNQALAVLSLTDRLTGLCNRRRLDQVLSGEWRRAHRYGTPFSVIMIDLDNFKDVN 449

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGH VGD V+  ++D L+ V      VGR GGEEF      ++ ++A +LA  LR+ +
Sbjct: 450 DTFGHAVGDAVLLRVADILLAVVRETDVVGRFGGEEFLLVCPETTVEDARVLAEALRREL 509

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +++   I       IT S G+A+       + ++ RAD+ALY AK+SGRN+V+
Sbjct: 510 QDTDFPIVG----RITASFGLADYEADPGPAALVARADKALYRAKQSGRNQVI 558


>gi|157963935|ref|YP_001503969.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157848935|gb|ABV89434.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
          Length = 485

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 90/165 (54%), Gaps = 8/165 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAF----ISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ +++  D L+G  N  AF      SL +    +  +S++  DID+FK++ND  GH +G
Sbjct: 319 KLERMASTDKLTGAANRQAFEDYFAKSLANSILESSPMSVLLLDIDHFKRVNDCHGHNIG 378

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D VI  LS  L         + R GGEEF     G S  + + +A  +RK++E   + I+
Sbjct: 379 DLVIQTLSHLLKGQLRNDDLLCRWGGEEFLILLPGCSLSQGSDIAEKIRKLVEARLVTIN 438

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G  I+ITIS G+AE    E    +I R D ALY AK+ GRNRVV
Sbjct: 439 -GCEINITISCGVAECRTSEKAEELINRVDIALYQAKEQGRNRVV 482


>gi|313680298|ref|YP_004058037.1| diguanylate cyclase [Oceanithermus profundus DSM 14977]
 gi|313153013|gb|ADR36864.1| diguanylate cyclase [Oceanithermus profundus DSM 14977]
          Length = 346

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 84/163 (51%), Gaps = 8/163 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            ++ +L   D L+G L+   F+    +L       S++ FD+D FKQIND +GHP GD+V
Sbjct: 186 KQMQKLVDTDALTGCLSRRRFLEETEALLESGRPGSLILFDLDNFKQINDTYGHPTGDRV 245

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +     + +        +GRLGGEEFA    G   +EA  LA  LR+ +E        GP
Sbjct: 246 LMRSVKRTLHNLREEDRLGRLGGEEFAVLLPGVGLEEALRLAERLRRALEAPS---DEGP 302

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               T S G+ E       S ++ RAD+ALY AK +G+NRV  
Sbjct: 303 P--ATASFGVVETGRLRTTSELLARADRALYRAKHAGKNRVAA 343


>gi|218782156|ref|YP_002433474.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01]
 gi|218763540|gb|ACL06006.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01]
          Length = 417

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 99/200 (49%), Gaps = 15/200 (7%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YN 126
           IS+++  ++  +   + + L  +Y  I  +S  D L+ L N   F + L         Y 
Sbjct: 217 ISLSLLSMIWILVSRLARRLTKAYETIEVMSITDELTRLHNRRHFETRLAEEISRSLRYG 276

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             +S++  DID+FK++NDN+GH  GD V+   +  L           R GGEEF      
Sbjct: 277 SPMSLMILDIDHFKRVNDNYGHQAGDWVLTQFATLLKDNVRKADVPARWGGEEFVVILTE 336

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-------ERCHKEPISTIIYR 239
           S+  +A + A  +R+ +E+++ NI  G SI +T+S G+A       +    E    ++  
Sbjct: 337 STISQARMAAEKVRRNVESAEFNIPDGRSIPVTVSVGVASLDMISGDEMGSEA-DVLVKT 395

Query: 240 ADQALYVAKKSGRNRVVCFS 259
           AD ALY AK+ GRNR V  S
Sbjct: 396 ADDALYRAKQEGRNRTVAVS 415


>gi|159184597|ref|NP_354083.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|159139899|gb|AAK86868.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 430

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 93/178 (52%), Gaps = 11/178 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           E      R+ +L+  D L+GL N  +F       +  +   +E  ++   DID+FK+IND
Sbjct: 243 ETLKQLKRLRELAERDHLTGLPNRRSFFERTRALMDVINDNDESGAVAILDIDHFKKIND 302

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GH  GD+ +  L++ L  +      +  RLGGEEFA    G   + A     +LR+ +
Sbjct: 303 TLGHDAGDRALKKLAELLQGMCDEQRHIPARLGGEEFAVFLRGLDARAAYAFCEELREQV 362

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E +   +S G S+ +TIS G+ E    EP    +  ADQ LY+AK +GRNRV  +SDI
Sbjct: 363 EKNGRQLS-GSSLALTISLGVVEIEKGEPFDNQLNAADQLLYLAKANGRNRV--YSDI 417


>gi|24215629|ref|NP_713110.1| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
 gi|45657012|ref|YP_001098.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24196786|gb|AAN50128.1| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
 gi|45600249|gb|AAS69735.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 308

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/214 (35%), Positives = 105/214 (49%), Gaps = 33/214 (15%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSR--------------IDCLSGLLNHSAF-- 118
           S  +S  L Y++G  + +L  S  +IS L+                D L+ L N  AF  
Sbjct: 100 SPDLSAGLIYVTGRDISDLIESNRKISLLAAELKDANDKLFEQACTDPLTKLKNRRAFNE 159

Query: 119 -ISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            ++SL   ++K    LS++  D+D+FK  ND FGHP GDKV+A L+  L           
Sbjct: 160 ELNSLIQLSQKQLSPLSLLMIDVDFFKDYNDKFGHPAGDKVLAILASLLAKTLRKDDVTA 219

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEF  A   +SE+EA  +A  L K+IE S+    S     +TIS GI       P 
Sbjct: 220 RYGGEEFIVALPNTSEKEAIEIAERLVKVIEESRWEKRS-----VTISVGITT-SQINPS 273

Query: 234 ST------IIYRADQALYVAKKSGRNRVVCFSDI 261
           +       II  AD+ALY +K +GRNRV   S I
Sbjct: 274 NNADHSIDIIEEADRALYHSKVNGRNRVTHSSQI 307


>gi|114564665|ref|YP_752179.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114335958|gb|ABI73340.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 318

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 130/266 (48%), Gaps = 29/266 (10%)

Query: 7   DFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILV 66
           D  + WL H+  +ES     F++    F S      +F       +    P  G    + 
Sbjct: 63  DLPATWLKHK--MES----VFLLKNRTFISWEQRPYVFQ------FKNYRPVTGRADFMY 110

Query: 67  ENLSLV-IISIT-----ISLLLGYISGSILKELFI--SYNRISQLSRIDCLSGLLNHSAF 118
           +N++L+ + S+T     IS+++  ++   + +L +  +  ++ QLS+ D L+ L N   +
Sbjct: 111 QNITLLPLASLTGQITHISIIVYDVTDIAVNKLQLKAANEQLEQLSQTDGLTLLHNRRHW 170

Query: 119 ISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
            S +         Y +  S+V  DID FK+IND +GHP GDKVI  ++  L         
Sbjct: 171 QSCMEKEFDRYSRYGDAASLVMIDIDNFKRINDEYGHPAGDKVIQHIAYLLKQALRDTDC 230

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHK 230
            GR GGEEF      ++ +EA      LRK IE S++   +   I +T+S GI +     
Sbjct: 231 AGRYGGEEFGVVLSKTTAEEALNFTERLRKRIEASEVAFEN-RLIKVTVSLGINDLDSEI 289

Query: 231 EPISTIIYRADQALYVAKKSGRNRVV 256
           +  ST +  AD+ALYVAK+ GRN+ V
Sbjct: 290 DNSSTWLSGADKALYVAKQEGRNKSV 315


>gi|218887723|ref|YP_002437044.1| diguanylate cyclase with extracellular sensor [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758677|gb|ACL09576.1| diguanylate cyclase with extracellular sensor [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 474

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 99/193 (51%), Gaps = 23/193 (11%)

Query: 81  LLGYISG--SILKELFISYNR--------ISQLSRIDCLSGLLNHSAF-------ISSLG 123
           L+  ++G  ++L  + + YNR        + +L+R D L+ L N S         +    
Sbjct: 284 LVARVAGFFALLVGVVLWYNRRLKRMNAVLERLARTDPLTDLPNRSRLNELFRREVERAQ 343

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAA 182
            Y    SIV  DID+FK++ND  GH  GD+ +   +  +   V GT   VGR GGEEF  
Sbjct: 344 RYRRPFSIVILDIDHFKRVNDELGHLAGDRTLQVFAGVVRDSVRGTDT-VGRWGGEEFLV 402

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
               ++ +EA  LA  LR  +  +Q     G  IH T+SAG+A     + + T+++RAD 
Sbjct: 403 LCPETTAEEAVQLAERLRGSLRATQF---EGGRIH-TLSAGVAAFREGDSVDTLLHRADT 458

Query: 243 ALYVAKKSGRNRV 255
           ALY AK  GR+RV
Sbjct: 459 ALYRAKNGGRDRV 471


>gi|229917001|ref|YP_002885647.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
 gi|229468430|gb|ACQ70202.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
          Length = 361

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 99/195 (50%), Gaps = 7/195 (3%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRI---SQLSRIDCLSGLLNHSA---FISSL 122
           +SLV+    I +L+G +S  +  +L  +  R     Q S  D L+GL N      + +S+
Sbjct: 157 VSLVLTIWMIGMLVGLLSSILTIDLEQTTRRAIEYKQSSERDHLTGLYNRRVWDRYTASV 216

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
           G  N   +++  DID+FK +ND +GH  GD V+   ++ L V       V R+GGEEF  
Sbjct: 217 GQENRTYNVLALDIDHFKHVNDTYGHGNGDLVLQQFANILKVETRAHDTVARIGGEEFVI 276

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
                S ++   +AN +R+ I      ++  P I IT S G+A      PI  ++  AD 
Sbjct: 277 LMYDLSPEKVDKVANRIRERIATELFYLNDFPPIQITTSVGVAHGT-SLPIKRMVDLADS 335

Query: 243 ALYVAKKSGRNRVVC 257
           ALY AK  GRN+VV 
Sbjct: 336 ALYQAKNEGRNQVVV 350


>gi|288958904|ref|YP_003449245.1| two-component response regulator modulated diguanylate cyclase
           [Azospirillum sp. B510]
 gi|288911212|dbj|BAI72701.1| two-component response regulator modulated diguanylate cyclase
           [Azospirillum sp. B510]
          Length = 290

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 81/164 (49%), Gaps = 8/164 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+G +N   F+            Y+  LS+V  DID+FK++ND  GH  GD
Sbjct: 113 LERLATTDPLTGAMNRRRFLERGAEEFTRSRRYDRPLSVVMLDIDHFKRVNDTHGHATGD 172

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + I            +   +GRLGGEEFA     +    A   A  LR+ I    + +  
Sbjct: 173 EAIRGTVRACKETLRSCDIIGRLGGEEFAVVMPETPPVNAFAAAQRLRQAIAAKPVRLEE 232

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G  +H+T+S G++        I  ++ RAD ALY AK +GRNRV
Sbjct: 233 GGEMHVTVSLGLSWMNASDSGIEPLLARADAALYRAKNAGRNRV 276


>gi|28211414|ref|NP_782358.1| signalling protein [Clostridium tetani E88]
 gi|28203855|gb|AAO36295.1| possible signalling protein [Clostridium tetani E88]
          Length = 345

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 98/181 (54%), Gaps = 20/181 (11%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLS-----IVFFDIDYFKQ 141
           LKEL +  +++S L   D L+G+ N    I  LG+      K+      +   D+D FK+
Sbjct: 169 LKELSMELHKMSYL---DSLTGMYNRRK-IMQLGNGLIIKAKICRSPYFVAMMDVDDFKE 224

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH +GDK +  +S   V         GRLGGEEF     G  ++E   L N+LRK
Sbjct: 225 INDTYGHALGDKALLVISQICVDNLKGKCNFGRLGGEEFIFIVTGKDKKEVMELMNELRK 284

Query: 202 -----IIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
                +IE    NI    +I IT+S G+ + +   E +  II RAD+ALY+AK++G+N+V
Sbjct: 285 EISKEVIEKPIRNIKR--NIKITVSIGVTDLKDQDESLEDIIQRADEALYLAKRNGKNKV 342

Query: 256 V 256
           +
Sbjct: 343 I 343


>gi|218782319|ref|YP_002433637.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218763703|gb|ACL06169.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 301

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 100/182 (54%), Gaps = 14/182 (7%)

Query: 90  LKELFIS---YNR-ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           +KEL+ S    NR + +L+  D L+GL NH  F  ++         Y+E LS V  DID+
Sbjct: 121 IKELYESLQETNRQLQELANRDGLTGLYNHRYFQDAMTKDFQRAMRYHESLSCVLCDIDF 180

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+ ND +GH  GD V++ L+  +           R GGEEFA     +    A ++A  
Sbjct: 181 FKKFNDTYGHQTGDIVLSTLARIVEDSLRDTDLAARYGGEEFALVLYHTPAAAAFMVAER 240

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256
           LR+ +E  +  I++  S+ +TIS G+A   H +     T+I  AD+ALY AK++GRN+V+
Sbjct: 241 LRESVEQHEF-IANDLSLSVTISVGVATYPHPDIPDHKTLIECADKALYKAKENGRNQVI 299

Query: 257 CF 258
            F
Sbjct: 300 SF 301


>gi|154175016|ref|YP_001407900.1| 3-deoxy-d-manno-octulosonic-acid transferase [Campylobacter curvus
           525.92]
 gi|112803394|gb|EAU00738.1| 3-deoxy-d-manno-octulosonic-acid transferase [Campylobacter curvus
           525.92]
          Length = 422

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 87/165 (52%), Gaps = 8/165 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
           N+I+  +  D L+ + N   F   +  Y        E  +I   DID+FK IND +GH  
Sbjct: 255 NQIANFANRDFLTSVYNRRYFYDDMTQYLAKAEETAEPYAIAMIDIDHFKNINDTYGHDS 314

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDKV+ FL+ +LV        V R GGEEF       S++EA     +LR  I NS+I++
Sbjct: 315 GDKVLQFLAKKLVDDTKGNDIVARFGGEEFCVVLKNISQEEAVKFFVNLRAKIANSKISL 374

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                I+ T+S G+        +  ++  AD+ALY+AK+SGRNRV
Sbjct: 375 KKN-VINFTVSIGVVFNRSDYRLDELLELADEALYIAKESGRNRV 418


>gi|186477632|ref|YP_001859102.1| diguanylate cyclase [Burkholderia phymatum STM815]
 gi|184194091|gb|ACC72056.1| diguanylate cyclase [Burkholderia phymatum STM815]
          Length = 316

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 12/209 (5%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           ++ +   L+EN  +V+    IS L      S  +    ++ R  Q +R D L+GL N   
Sbjct: 109 WFWMTESLLENDWIVLTGTEISALR-----SNEQAWIGAHERAVQEARTDALTGLANRRH 163

Query: 118 FISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
            +SSL             L++   D+D+FKQIND+ GH  GD V+    +          
Sbjct: 164 SMSSLELAITAAAGTETPLTVALVDLDHFKQINDSHGHAAGDAVLRDFGEVCRHATRQTD 223

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
             GR+GGEEF      +S +        +R+ + + ++ ++   +I  + SAG+      
Sbjct: 224 IAGRIGGEEFLVVFPSTSVEHGVSAVERMRRQVLSRRVQVADDRAIRYSFSAGVCRVELS 283

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + ++T + RAD ALY AK+ GRNR V +S
Sbjct: 284 DDLNTTLARADSALYSAKREGRNRTVAWS 312


>gi|50121764|ref|YP_050931.1| hypothetical protein ECA2840 [Pectobacterium atrosepticum SCRI1043]
 gi|49612290|emb|CAG75740.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043]
          Length = 490

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 89/165 (53%), Gaps = 8/165 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAF---ISSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ Q++  D L+GL+N  AF      LG+ N    + LSI+  DID+FK+IND +GH VG
Sbjct: 324 RLEQMATTDKLTGLMNRQAFDYLFRRLGTKNALQHKSLSILLIDIDHFKKINDKYGHNVG 383

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  +S  L     +     R GGEEF           A   A  LR  IE + +   
Sbjct: 384 DLVLQEVSAILSTNTRSSDQSCRWGGEEFVILLDDCDINAAQQRAEALRHSIEIAHLPYR 443

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G  I +T+S G+AE    E +S +I RAD ALY AK+ GRN+V+
Sbjct: 444 EG-IIQVTVSCGVAEYRDGETLSMLINRADIALYQAKQQGRNQVM 487


>gi|225848278|ref|YP_002728441.1| signal transduction response regulator [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643341|gb|ACN98391.1| signal transduction response regulator [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 271

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 8/163 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY----NEK---LSIVFFDIDYFKQINDNFGHPVGDK 153
            Q + ID L+G++N  +F  +LG+      EK    +++  DID FK +ND +GH  GD 
Sbjct: 108 KQDATIDFLTGVVNRRSFDRTLGNLLKEVREKDYIFTLILLDIDNFKSVNDTYGHLAGDL 167

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  +S  L +       +GR+GGEEF     G S +    +A  +R IIEN ++     
Sbjct: 168 VLKEISTVLRIFLRANTIIGRIGGEEFGIILPGVSLENGIKVAERIRSIIENREVKFED- 226

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I  T S G+ E   ++   +I  R D+ALY+AK++G+NRV 
Sbjct: 227 RIIKFTASFGVTESKKEDTKESIYKRVDEALYIAKRNGKNRVA 269


>gi|116250265|ref|YP_766103.1| GGDEF domain-containing regulatory protein [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115254913|emb|CAK05987.1| putative transmembrane sensory box GGDEF domain protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 419

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 7/192 (3%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-- 124
           E+LSL +  I     +G +S ++ +    + +R+  ++  D L+GLLN  A     G+  
Sbjct: 214 EDLSLAV-CIAGMTGIGALSLALHQWRLAARHRLDAIT--DPLTGLLNRRALFDQYGTRP 270

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
                +++ FDID+FK +ND FGH  GD+V+   + +L     T     RLGGEEF    
Sbjct: 271 MGTTTAVIVFDIDHFKSVNDRFGHATGDRVLNVFAGELSAHCRTGDTAARLGGEEFVLVL 330

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQA 243
                  A + A  +R+  E  +I+I     +  T+S G+A  R       T++  AD+A
Sbjct: 331 KEIMPGRAELTAERIRRAFEAREIHIDD-EVLTCTVSVGVAPGRSKSLDFDTMLSAADKA 389

Query: 244 LYVAKKSGRNRV 255
           LYVAK++GRNRV
Sbjct: 390 LYVAKRAGRNRV 401


>gi|28898257|ref|NP_797862.1| hypothetical protein VP1483 [Vibrio parahaemolyticus RIMD 2210633]
 gi|153837780|ref|ZP_01990447.1| ggdef domain containing protein [Vibrio parahaemolyticus AQ3810]
 gi|260878597|ref|ZP_05890952.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|260898777|ref|ZP_05907218.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           Peru-466]
 gi|28806474|dbj|BAC59746.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|149748885|gb|EDM59720.1| ggdef domain containing protein [Vibrio parahaemolyticus AQ3810]
 gi|308087876|gb|EFO37571.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           Peru-466]
 gi|308091353|gb|EFO41048.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|328473732|gb|EGF44567.1| hypothetical protein VP10329_13755 [Vibrio parahaemolyticus 10329]
          Length = 320

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 9/164 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S++SR D L+GL N + +  SL          +   S+V FDID+FK++ND +GHP GD
Sbjct: 152 LSEISRKDGLTGLFNRAFWEQSLKDEFAHLKVIDGPCSLVIFDIDHFKKVNDTYGHPTGD 211

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +VI   S  L     +    GR GGEEF      +++++A   A  LRK IE   + +  
Sbjct: 212 EVIRRTSALLRKTARSSDICGRFGGEEFTVLLPHTNQEQACYFAERLRKRIEQEIVKVED 271

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
              I+ TIS G+ E + + E  +  +  AD ALY AK++GRN+ 
Sbjct: 272 F-LINYTISIGVCEYKPYFESHTQWLKSADAALYRAKENGRNQT 314


>gi|89099973|ref|ZP_01172844.1| putative diguanylate cyclase (GGDEF) [Bacillus sp. NRRL B-14911]
 gi|89085365|gb|EAR64495.1| putative diguanylate cyclase (GGDEF) [Bacillus sp. NRRL B-14911]
          Length = 280

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 117/240 (48%), Gaps = 10/240 (4%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           P   +I+F I  + + A       + +F  GL          +E+L+   ++    +L+ 
Sbjct: 44  PAVILIFFLILRAKWGAVYSLFIFVIIFAFGLMNLPNASGDSLESLAQFYVAYLFYILVF 103

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFK 140
           Y++  + K LF     + +++  D L+G+ N      ++      +E  S++FFDID+FK
Sbjct: 104 YMALHLFK-LFSELESMKRVAYTDSLTGIANRLRIDGWLEEWIKKSEGFSVIFFDIDHFK 162

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GH  GD V+  L+  +          GR GGEEF      + E  A  LA  LR
Sbjct: 163 CVNDTYGHDAGDLVLKQLASLVRQPLTGAELFGRWGGEEFIILTPKTGES-AVNLAEKLR 221

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           K+I  S    S  P+ + T S G+A+    + + +++ RADQ LY +K  GRNR V F D
Sbjct: 222 KVIMES----SFPPAGNQTASFGVAQYKKGDTVDSLLSRADQGLYQSKHEGRNR-VTFGD 276


>gi|307720510|ref|YP_003891650.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
 gi|306978603|gb|ADN08638.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
          Length = 515

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 8/163 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q S+ D L+ L N  A    +         Y    +IV FDID+FK++ND +GH  GD
Sbjct: 350 VKQESKEDFLTKLYNKRALDEFMNMKEGEYKRYGRNFAIVMFDIDHFKKVNDTYGHEAGD 409

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V++  +  L     T   +GR GGEEF +    +  Q   I A  +RK +E ++  +  
Sbjct: 410 AVLSAFAKILKKESRTVDIIGRFGGEEFLSLLSETDLQGGVIFAEKVRKHVEKTRF-VYK 468

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G  I +T+SAGI++R     +   +  AD+ LY AKK GRN+ 
Sbjct: 469 GKRIKVTVSAGISQRSDHISLEAAVNSADEYLYKAKKEGRNKA 511


>gi|146340506|ref|YP_001205554.1| hypothetical protein BRADO3548 [Bradyrhizobium sp. ORS278]
 gi|146193312|emb|CAL77328.1| conserved hypothetical protein; putative Diguanylate-cyclase (DGC)
           or GGDEF domain [Bradyrhizobium sp. ORS278]
          Length = 355

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 102/204 (50%), Gaps = 16/204 (7%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--------SAFISSLGS 124
           I+   +SL    ISG     L  S   I   S  D L+GL N         +A ++ L +
Sbjct: 152 ILEERLSLSKDEISG-----LQHSLEAIRAESLTDPLTGLGNRKYFDRMIETAVLTGLAT 206

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
            N+ LS++ FDID+FK  ND++GH  GD+V+  +   L           R GGEEFA   
Sbjct: 207 -NQPLSLLMFDIDHFKSFNDSYGHLTGDQVLRLVGLTLKHAVKGQDIAARYGGEEFAVVL 265

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQ 242
             ++ ++A  +A+ +R+ +   ++   S   I   +TIS G++     +    +I RAD 
Sbjct: 266 PNTALRQALAVADQIRRAVTAKELKKKSTGEILGRVTISVGVSMLRPGDDTDALIERADA 325

Query: 243 ALYVAKKSGRNRVVCFSDIENNTC 266
            LY AK +GRNRVVC SD E  T 
Sbjct: 326 CLYAAKHNGRNRVVCESDPEYATA 349


>gi|189425735|ref|YP_001952912.1| diguanylate cyclase [Geobacter lovleyi SZ]
 gi|189421994|gb|ACD96392.1| diguanylate cyclase [Geobacter lovleyi SZ]
          Length = 459

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/183 (36%), Positives = 90/183 (49%), Gaps = 14/183 (7%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----------IVFF 134
           I+   LKEL  +  ++ +++ ID L+GLLN  A    L    E+LS           +  
Sbjct: 272 INNRFLKELREAQEKLVEMATIDSLTGLLNRRA---GLERVEEELSRHQRSERAFACLLL 328

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID FK+IND +GH  GD V++     L         V R GGEEF      +S   A  
Sbjct: 329 DIDRFKKINDTYGHQAGDAVLSEFGATLRRHVRKHDIVCRYGGEEFLLLLPDTSPSAART 388

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            A  +R +   + I + +G  I +T S GI+     E    +I RAD ALY AK SGRNR
Sbjct: 389 TAEKIRAVTAATPI-MFAGRQIAVTTSIGISMMQGDETAKAMIARADAALYEAKNSGRNR 447

Query: 255 VVC 257
           VVC
Sbjct: 448 VVC 450


>gi|86749790|ref|YP_486286.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
 gi|86572818|gb|ABD07375.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
          Length = 411

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 82/159 (51%), Gaps = 9/159 (5%)

Query: 106 IDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+GL N   F  +     E+       ++++ FD+D+FK IND FGHP GD+VI   
Sbjct: 220 LDPLTGLFNRRGFSEATARMIEREAEAGRPVTVMIFDLDHFKSINDRFGHPAGDEVIKLF 279

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  +          GR+GGEEF AA L  S  EA   A  +R+  E   + +   P I  
Sbjct: 280 AAIVSGSLRISDLCGRIGGEEF-AALLPCSIDEAMTAAERVREAFEGCGLEVDGAP-IAT 337

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           T+S G+A       +  ++  AD ALY AK+ GRNRVV 
Sbjct: 338 TVSIGVAGGPANIELDVLLAAADTALYQAKRGGRNRVVA 376


>gi|309778893|ref|ZP_07673663.1| GAF domain/GGDEF domain protein [Ralstonia sp. 5_7_47FAA]
 gi|308922240|gb|EFP67867.1| GAF domain/GGDEF domain protein [Ralstonia sp. 5_7_47FAA]
          Length = 348

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 106/211 (50%), Gaps = 17/211 (8%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           PF   E  L+++L+  + S      L     SIL EL ++ +     S  D + G+ N  
Sbjct: 138 PFEQAERELLDDLASWVESGFRERELSETQRSILTELQVARHE----SLTDPMLGIWNRR 193

Query: 117 AFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
           A +  L         Y + LS++  D+D+FK++ND +GHP GD V+  ++ +L V     
Sbjct: 194 AAMELLTRECGHAMRYGQPLSLLVVDVDHFKRVNDTYGHPAGDAVLVEIARKLRVNARPV 253

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
             VGR GGEEF      ++  +A  +A  LR  +E+ +I       I  TIS G+A  C 
Sbjct: 254 DAVGRYGGEEFLVLLPDTTTTQATGIAERLRSAVESLEIATPEA-DIRCTISVGLAS-CE 311

Query: 230 --KEPIST--IIYRADQALYVAKKSGRNRVV 256
             + P +   +I RAD AL  AK+ GRNRV+
Sbjct: 312 QGQNPCTPTDLIMRADAALLAAKRLGRNRVI 342


>gi|75906449|ref|YP_320745.1| diguanylate cyclase [Anabaena variabilis ATCC 29413]
 gi|75700174|gb|ABA19850.1| Putative diguanylate cyclase (GGDEF domain) [Anabaena variabilis
           ATCC 29413]
          Length = 332

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 107/199 (53%), Gaps = 18/199 (9%)

Query: 74  ISITISLLLGYISGSILK-----ELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121
           ++ T +L+LG ++  + K     +L    + +S ++  D L+ L N  A        I+ 
Sbjct: 121 VTATHNLILGQLTVGLRKAQKYRDLLQKNHILSAIALADSLTELNNRRALEWDLPRQITK 180

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             + N  LS+V  D+DYFK++ND +GH +GD+++  L  +L     +     R GGEEF 
Sbjct: 181 ARNQNLPLSLVILDVDYFKKVNDQYGHLIGDRLLQLLCTRLRHNLRSQDTAFRYGGEEFV 240

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC----HKEPISTII 237
                ++ +EA I+A  L +I+   Q +I+S   I +TIS G+A  C      E  ++++
Sbjct: 241 VILAHTTGEEAMIVAERLNRIVGEQQFSINSKLMISVTISLGVA--CLGTDDDEQGNSLL 298

Query: 238 YRADQALYVAKKSGRNRVV 256
            RADQ L  AK SGRN+V+
Sbjct: 299 DRADQCLLAAKASGRNQVI 317


>gi|254449889|ref|ZP_05063326.1| sensor histidine kinase [Octadecabacter antarcticus 238]
 gi|198264295|gb|EDY88565.1| sensor histidine kinase [Octadecabacter antarcticus 238]
          Length = 212

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAFISSLG------SYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F+ S+          EK   ++ FD D FK  NDN GH  GD V+  L+
Sbjct: 48  DPLTGLYNRRYFMDSMRRETVSFERGEKGFGLISFDADKFKTFNDNHGHEAGDLVLRALA 107

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           +++V V        R+G EEFA     +   EA   A  LR+ +E  ++  + GP   +T
Sbjct: 108 ERMVAVMPDDAICARIGREEFAILVPKTDLDEALACAESLRRDVEAIEVRTAFGPLPRVT 167

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           IS+G +A      P S ++ +AD+ALYVAK  GRNRV
Sbjct: 168 ISSGVVAHDGGATPPSVLMKQADEALYVAKAGGRNRV 204


>gi|271501393|ref|YP_003334418.1| diguanylate cyclase [Dickeya dadantii Ech586]
 gi|270344948|gb|ACZ77713.1| diguanylate cyclase [Dickeya dadantii Ech586]
          Length = 294

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 88/150 (58%), Gaps = 5/150 (3%)

Query: 107 DCLSGLLNHSAFISSL-GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           D L+ L N   F+ +L  + N+K+S++  DID+FK IND+ GH VGD+V++   DQL  +
Sbjct: 144 DELTRLPNRRYFVETLSNTTNKKMSMMIIDIDFFKHINDSRGHDVGDEVLSRFGDQLKDI 203

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
             T + V R+GGEEFA    G S  E    A  + +   N +++   G    I++S G+ 
Sbjct: 204 SVTALKVFRIGGEEFAVIGEGLSRYEVIRYAEAICRDARNIRLDDGQG----ISVSIGVG 259

Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            R   E   ++I + D+ALY AK++GRNR+
Sbjct: 260 FRKVGESQQSLIKKTDKALYRAKENGRNRI 289


>gi|45655764|ref|YP_003573.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|45602735|gb|AAS72210.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 524

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 38/247 (15%)

Query: 30  YFSIFFSIFIATVIFIANI----FLFYI--GLTPFYGLEYILVENLSLVIISITISLLLG 83
           Y+  FF I    V  +  I    FLF +   L PF+GL        +L I+SI       
Sbjct: 293 YYWAFFEIKDQEVRLVHRISAVEFLFSVILNLLPFWGL------ICTLGIVSIL------ 340

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDI 136
           YI      +L  S  ++S++   D L+G+ N   F+        ++  + +  +I+  DI
Sbjct: 341 YI------KLKASMEQVSKMIHTDPLTGIANRRGFLKLTQKSLVTIHRHGQSWTILMIDI 394

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FKQ+ND FGH  GD+++  +S  L         V R GGEEFA    G + +++  +A
Sbjct: 395 DHFKQVNDRFGHDTGDRILIKVSQILSANIRQTDVVCRWGGEEFAVFLFGVTPEDSINIA 454

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR----ADQALYVAKKSGR 252
             LRK +E+  +     P   +T+S GI+E    +   + +      ADQALY AK  GR
Sbjct: 455 EHLRKEVESKVVLKDGKP---VTLSIGISEGKSGKSSGSGLENAFACADQALYQAKTLGR 511

Query: 253 NRVVCFS 259
           NRV  F 
Sbjct: 512 NRVCVFD 518


>gi|311696418|gb|ADP99291.1| GGDEF family protein [marine bacterium HP15]
          Length = 355

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 96/188 (51%), Gaps = 24/188 (12%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSI 131
           +++  ++ G + +EL       ++L+  D L+G LN S     L         Y    S+
Sbjct: 160 AMIFAWLVGKLQQEL-------TRLATTDPLTGCLNRSQLADILNGQIQMRERYERVSSL 212

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  D+DYFK IND +GH  GDKV+  ++ +L         + R+GGEEF      + +++
Sbjct: 213 ILLDLDYFKTINDQWGHLAGDKVLTEMALRLRSRLRESDQLFRIGGEEFMIVLPETRQKD 272

Query: 192 AAILANDLRKIIENSQINISSGP---SIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           A +LAN L         +IS+ P    I +T SA +AE    E  S  + RADQALY AK
Sbjct: 273 ADVLANQL-------LTSISARPFLEDIKVTASASVAEVSKGETWSVWLNRADQALYEAK 325

Query: 249 KSGRNRVV 256
             GRN+VV
Sbjct: 326 SRGRNQVV 333


>gi|313607500|gb|EFR83825.1| ggdef domain-containing protein [Listeria monocytogenes FSL F2-208]
          Length = 260

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 123/251 (49%), Gaps = 23/251 (9%)

Query: 17  KNLESFSPHTFMIYFSIFFSIFIATV-IFIANIFLFYIGLTPFYGLEYILVENLSLVIIS 75
           K LE F      I   I  S  +  + + +A   LF+I +T F     +L+   +LVI +
Sbjct: 24  KRLEKFKIWGVFILNIIACSFVVINLHLILARESLFWINMTIF-----VLI---ALVIGA 75

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-LGSYNEKLSIVFF 134
           ++  L+   I     K+LF  Y + S L  +  LS +      I+  + S + +++++  
Sbjct: 76  VSAGLMSNMIKS---KQLFQKYEQDSTLDYLTKLSNVRQFDEKINHVMDSGSRQVTLMLI 132

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQ 190
           DIDYFK IND +GH  GD ++     QL V+       G    R GGEEF+   L  S +
Sbjct: 133 DIDYFKNINDTYGHDAGDAILK----QLAVILKASTTDGSEAFRNGGEEFSIVLLDCSIE 188

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKK 249
           E   +A  +RK  E     I  G  + ITIS G++        S  +++ AD+ALY AK 
Sbjct: 189 EGNKVAEQVRKETEEHDFVIPGGQKVKITISVGVSSNKAGANTSEGLFKSADEALYKAKL 248

Query: 250 SGRNRVVCFSD 260
           +GRNR VC +D
Sbjct: 249 TGRNR-VCIAD 258


>gi|298293748|ref|YP_003695687.1| diguanylate cyclase [Starkeya novella DSM 506]
 gi|296930259|gb|ADH91068.1| diguanylate cyclase [Starkeya novella DSM 506]
          Length = 590

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 7/164 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-SYN--EKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +R++ L+ +D L+G+ N  +F ++L   +N   +L+++  DID FK  ND +GH  GD  
Sbjct: 410 HRLNSLASLDPLTGIANRRSFDAALALQWNTVSQLAVLMIDIDKFKAFNDLYGHKEGDSC 469

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           I  ++  +         V RLGGEEFA     +S + A   A  LR+ +E   +    GP
Sbjct: 470 IRLVAQTMASTLRGTDLVARLGGEEFAVLMPSASLRAATEAAQRLRRAVETVAVPHRGGP 529

Query: 215 SIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRV 255
           +  +T+S G A  C  EP    S ++  AD+ALY AK +GRN V
Sbjct: 530 AGVVTVSIGCAA-CEPEPGLTSSDLMVAADRALYEAKAAGRNEV 572


>gi|301299632|ref|ZP_07205892.1| prevent-host-death family protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852776|gb|EFK80400.1| prevent-host-death family protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 310

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 12/205 (5%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDC----LSGLLNHSAFISSLGSYNEK 128
           II +T+  LL +   ++            +++R D     L+ LLN+ +F S +   ++K
Sbjct: 97  IIDVTLGTLLMFAVANVYVNFLTKQYEELRMARYDVSHDGLTNLLNYDSFHSHMNELSQK 156

Query: 129 LS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV----FGTPMFVGRLGGEEF 180
            S    I   DID FK+ ND +GH  G+ V+ + + +L       FG    V R GGE F
Sbjct: 157 SSRHQIICILDIDDFKKFNDTYGHLEGNDVLVYFTKRLFAEVKAHFGELASVYRFGGEGF 216

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
             +  G + ++   + + L + +       ++G  I +T S GIA  C K+ I T++  A
Sbjct: 217 CVSVHGVTVEDCLEMTDKLAEELRTKDYVTATGDKITVTFSGGIALECDKKDIKTVLREA 276

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D+ALY +K+  +  V C  D+E  +
Sbjct: 277 DKALYYSKRHKKGSVTCAKDLEKKS 301


>gi|323500035|ref|ZP_08104989.1| diguanylate cyclase [Vibrio sinaloensis DSM 21326]
 gi|323314891|gb|EGA67948.1| diguanylate cyclase [Vibrio sinaloensis DSM 21326]
          Length = 315

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 97/185 (52%), Gaps = 20/185 (10%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NE-KL-----SIVFFDID 137
           IS ++ KE      ++ QL   D L+GL+N   F+S L SY N+ KL     S++  D+D
Sbjct: 137 ISRTVEKE-----RQVKQLLERDELTGLVNRRTFLSKLTSYFNQFKLNGLHTSVLIIDLD 191

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK  ND  GH  GDKV+  ++D       +   +GRLGGEEFA      S  +A  +  
Sbjct: 192 RFKHWNDTLGHVTGDKVLKHVADLCSKQLRSVEIIGRLGGEEFAVILPNVSSDKALAIGE 251

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRN 253
            LRK +E +     +   I +TIS G+   C   P  T    I+ R+D+A+Y +K +GRN
Sbjct: 252 RLRKSVEQTPYR-DNDQEIKVTISVGV---CSFSPSDTSKLDILERSDKAMYKSKHTGRN 307

Query: 254 RVVCF 258
           +V  +
Sbjct: 308 KVSTY 312


>gi|195953783|ref|YP_002122073.1| diguanylate cyclase [Hydrogenobaculum sp. Y04AAS1]
 gi|195933395|gb|ACG58095.1| diguanylate cyclase [Hydrogenobaculum sp. Y04AAS1]
          Length = 497

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 95/180 (52%), Gaps = 8/180 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
            ++ EL     +   ++  D L+G+ N   F       I      N  + IV +DID FK
Sbjct: 310 KLVSELQKDKEKFQDMAYKDALTGIYNRRFFFEEINISIEQAKRANVPICIVMYDIDNFK 369

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH +GD V+   ++ +V          RLGGEEFAA    +  +    +AN++R
Sbjct: 370 KVNDTYGHDMGDVVLKDFANVIVSSIRKSDIPARLGGEEFAAYLYNTDIENGFRVANNIR 429

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  ENS   + +G +I  T S GI +   ++ I + + + D+ALYVAK++ +NRVV + +
Sbjct: 430 QNFENSTHTL-NGTTIKCTCSGGIYQIQQEDGIDSALKKVDEALYVAKRTTKNRVVIYKE 488


>gi|311278684|ref|YP_003940915.1| diguanylate cyclase [Enterobacter cloacae SCF1]
 gi|308747879|gb|ADO47631.1| diguanylate cyclase [Enterobacter cloacae SCF1]
          Length = 507

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 19/209 (9%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----- 118
           +L   ++LV+++ T  LLL Y+  +     F+   ++ Q +  D L+GL N   F     
Sbjct: 304 VLCSIIALVVMATTQWLLLNYMHTN-----FLQRQQLIQEAMYDALTGLANRRHFNERVQ 358

Query: 119 --ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
               +     + LS++  D+D+FK+IND +GH VGD+V+  +   L  +      + R+G
Sbjct: 359 WACRTAQRKRQPLSVLSIDLDHFKRINDYYGHSVGDEVLRCIGQLLPGLVREGDIIARVG 418

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE----- 231
           GEEF    L +  +EA ++A  +R    N  I+   G  I  T S G+ +    E     
Sbjct: 419 GEEFVVVMLSTELEEAGVVAEHIRASFANQSIDF-HGRKIQFTASFGLTQIMPDELDVSD 477

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSD 260
            I   + RAD+ LY AK+ GRNR VC  D
Sbjct: 478 GIKVALDRADRGLYRAKREGRNR-VCRVD 505


>gi|293610559|ref|ZP_06692859.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826903|gb|EFF85268.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 397

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 133/288 (46%), Gaps = 36/288 (12%)

Query: 7   DFLSIWLCHEKNL-ESFSPHTFMIYFS-------------IFFSIFIATVIFIANIFLFY 52
            F ++ LCH+  L  S SP T + Y               ++ ++  AT+I     +L  
Sbjct: 111 QFFALMLCHDGYLIGSISPATMVGYVGTIGVGLVLFDRKIVYSALVPATIILTVCTYLSM 170

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK---------ELFISYNR---- 99
            G      L Y  + N   +  + T S  LG ++  I+          E+ ++  R    
Sbjct: 171 TG-----ALAYAPLFNFRAMDHAQTNSFWLGSMAFFIMPILLACFVLFEILLTQWRQRET 225

Query: 100 -ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVI 155
            I +LS+ID L+ +LN  +    L S +++    ++V  DID+FK+IND +GH  GD+V+
Sbjct: 226 YIQRLSQIDPLTNVLNRRSLNMHLESLHQQQFDYAVVLLDIDHFKKINDIYGHHQGDQVL 285

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L     +   +GR GGEEF      +   +A  +A   R+ ++   +  +    
Sbjct: 286 IEIAQCLSENLRSEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRQALQELPVFTAQNNP 345

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           IHI+ S GI+     E    +I +ADQALY  K SGRN+V  F   E 
Sbjct: 346 IHISASFGISSSAFAEDPYLVIRQADQALYAVKASGRNQVRTFHQTET 393


>gi|118578533|ref|YP_899783.1| PAS/PAC sensor-containing diguanylate cyclase [Pelobacter
           propionicus DSM 2379]
 gi|118501243|gb|ABK97725.1| diguanylate cyclase with PAS/PAC sensor [Pelobacter propionicus DSM
           2379]
          Length = 301

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 90/174 (51%), Gaps = 8/174 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL     ++ +++ +D L+G+ N     S L       G Y+   S++  DID+FK++ND
Sbjct: 129 ELATYEQKLIEMNTVDALTGVYNRRFLESRLKEECDRYGRYSRPFSLMMIDIDFFKKVND 188

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD V+  ++     +     F+ R GGEEF      +    A  +A  LR  IE
Sbjct: 189 THGHQGGDLVLKNVAAGAAAMIRKSDFLARYGGEEFCCLLPETDCDAAETVAEHLRAHIE 248

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           N + ++     I +TIS GIA     +   T++ RAD+ALY AK+SGRNR V F
Sbjct: 249 NME-HLFQKKVIRVTISLGIACFAPDDSPETLVKRADEALYQAKRSGRNRFVRF 301


>gi|311696602|gb|ADP99475.1| sensory box/GGDEF/GAF/EAL domain protein [marine bacterium HP15]
          Length = 449

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 89/169 (52%), Gaps = 12/169 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGD 152
           + Q S  D L+G  N   F   L    E+L       ++V FD D+FK++ND++GH VGD
Sbjct: 277 LRQTSTTDDLTGAANRRRFTEVLSWEFERLKRNGAGYAVVLFDFDWFKRVNDHYGHHVGD 336

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+   + ++     T   +GR+GGEEFA       E  A   A  LR+ +E  Q+    
Sbjct: 337 LVLRETAHRIKNELRTGDTLGRIGGEEFAVLLPQCDENSARQFAERLRRSVE--QLRFIG 394

Query: 213 GPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              +  TI+ G+A  +R  ++P S I+ RADQA+Y  K  GRN+VV F 
Sbjct: 395 FDELRGTITCGVAISDRTDEKP-SQILVRADQAMYRGKAQGRNQVVVFD 442


>gi|119775755|ref|YP_928495.1| cyclic nucleotide phosphodiesterase [Shewanella amazonensis SB2B]
 gi|119768255|gb|ABM00826.1| diguanylate cyclase [Shewanella amazonensis SB2B]
          Length = 626

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/129 (41%), Positives = 79/129 (61%), Gaps = 3/129 (2%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS++ FD D+FK+IND+FGH VGDKV+  ++            VGR+GGEEF A    ++
Sbjct: 495 LSVILFDADHFKKINDHFGHDVGDKVLIAMAQSSAGQMRRGDLVGRIGGEEFLALLPHTT 554

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYV 246
            ++A  +A  LR  IE + ++    P + ++ISAG+A  +    +  S+ + RAD ALY 
Sbjct: 555 LEQAVEIAERLRLTIETTDLS-EVAPGLGMSISAGVATLDSSRDKNFSSFLNRADHALYR 613

Query: 247 AKKSGRNRV 255
           AK +GRNRV
Sbjct: 614 AKHNGRNRV 622


>gi|78355616|ref|YP_387065.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218021|gb|ABB37370.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 403

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/190 (34%), Positives = 92/190 (48%), Gaps = 11/190 (5%)

Query: 77  TISLL--LGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEK----- 128
           T+SL   LG  S +  +   ++  R + Q +  D L+GLLN       L     +     
Sbjct: 201 TLSLFSALGEYSRAHTQRTLVALTREMEQCACTDPLTGLLNRRGIYDRLNEERARATRSG 260

Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
              S++  D+D+FK +ND FGH  GD V+  L++           V R GGEEF      
Sbjct: 261 STFSVILCDVDHFKNVNDCFGHQCGDHVLHQLAEHFRRSVRGQDVVCRWGGEEFLFILPE 320

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
           + EQ A  LA  LR  +E + +N    P I IT+S G+ E    E     I  ADQ LY+
Sbjct: 321 TDEQGALNLAEKLRSTVEQTPVNYHGMP-IDITLSLGVQECTLTESTEFHIRVADQKLYI 379

Query: 247 AKKSGRNRVV 256
           AK+ GRN+VV
Sbjct: 380 AKEHGRNKVV 389


>gi|150396684|ref|YP_001327151.1| diguanylate cyclase [Sinorhizobium medicae WSM419]
 gi|150028199|gb|ABR60316.1| diguanylate cyclase [Sinorhizobium medicae WSM419]
          Length = 398

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/179 (36%), Positives = 95/179 (53%), Gaps = 10/179 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEKL--SIVFFDIDY 138
           I G ++K++ +   R S  S ID LSGL N   FI  +  +    N K   +++  D+D 
Sbjct: 206 ILGVMVKDI-VDAARAS--SEIDSLSGLWNRRGFIERVAPWLLSRNAKSPGALILTDLDR 262

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND +GH  GD+VI   +  L+ +  +     RLGGEEFA    G    +A ++A  
Sbjct: 263 FKGVNDTYGHHTGDEVIRQFARVLLDLIPSRAAAARLGGEEFAVFLPGVDLADARVVAQG 322

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +R  I ++ I      +  IT S G+A     E +   + RAD+ALYVAK +GRNRV C
Sbjct: 323 MRAAIASTPIA-DLPETATITASFGVAAIAPGESLEMALQRADKALYVAKAAGRNRVEC 380


>gi|56420376|ref|YP_147694.1| hypothetical protein GK1841 [Geobacillus kaustophilus HTA426]
 gi|56380218|dbj|BAD76126.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 608

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 124/267 (46%), Gaps = 33/267 (12%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY---ILVENLSLVIISITISLLLGY--- 84
           F    S+ +  +I I+ IF+F++ L   Y   +   +L E +    +++ +SL+L     
Sbjct: 141 FPYMVSLLVYFLINISLIFMFFVFLERVYKGAFNFGVLFEAMVSYCVTLILSLVLAILLD 200

Query: 85  ---------------ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---- 125
                          I   + ++  + Y  +S  +  D L+GL NH  F  +L       
Sbjct: 201 KERYFGLFLFTVLVIILSVVFRKFIVLYELVSNRANKDHLTGLYNHGFFKEALKEQFSDC 260

Query: 126 ---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFA 181
               + L++ F D+D FK+ ND  GH  GD+++ F    L   V GT   V R GGEEFA
Sbjct: 261 KLLKQPLTLAFLDLDDFKKYNDRNGHLQGDRLLTFFGKLLQKAVGGTNFTVARYGGEEFA 320

Query: 182 AAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAE-RCHKEPISTIIYR 239
                +++++A    N LRK + ++    +   P   ++ S GIAE          +I+R
Sbjct: 321 ILMPNTTKEDAYAFLNRLRKEVNDTYFEGVEHIPYRCLSFSCGIAEMEKDMHESDELIHR 380

Query: 240 ADQALYVAKKSGRNRVVCFSDIENNTC 266
           ADQALY AK  G+N V  +   ++N C
Sbjct: 381 ADQALYYAKAQGKNNVQLYD--KHNMC 405


>gi|238026719|ref|YP_002910950.1| diguanylate cyclase [Burkholderia glumae BGR1]
 gi|237875913|gb|ACR28246.1| Diguanylate cyclase [Burkholderia glumae BGR1]
          Length = 241

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 88/169 (52%), Gaps = 8/169 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGH 148
           +E+    N+++  +  D L+G+LN SA I            ++V  DID FK+IND+FGH
Sbjct: 72  REMQALANQLAHRASHDALTGVLNRSAVIERTAKTLRTRNAAMVVLDIDEFKRINDDFGH 131

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           P GD VI  + D L  +     F+GR+GGEEF          EA +LA  +R+ + +S +
Sbjct: 132 PTGDAVILGVVDCLRSIVVERGFIGRVGGEEFTVILPDCEASEAGMLAERMRRAMSDSLV 191

Query: 209 NISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                P +   IT S GI+         T    AD+ALY AK+ GRNRV
Sbjct: 192 V----PPVDRAITASFGISINAAGTSFDTAYGMADEALYRAKRGGRNRV 236


>gi|227114266|ref|ZP_03827922.1| hypothetical protein PcarbP_14933 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 281

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 102/193 (52%), Gaps = 17/193 (8%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121
           LS+V++S  +  LL  ++   L EL I       ++R D L+G L   AF       +S 
Sbjct: 94  LSVVLLSAILGSLLSLLAKKYLIELPI-------IARYDDLTGYLRRDAFFLAANKALSI 146

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                  +S++  DIDYFKQ+ND+FGH +GD  + F++D     F      GR+GG+EFA
Sbjct: 147 ANLTKRPVSVILIDIDYFKQVNDSFGHSIGDDALKFVADTFKKSFRREDIFGRIGGDEFA 206

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRA 240
                +   +A  + +  R+ + ++    ++G  I +T+S G+ E     E +S ++ RA
Sbjct: 207 IVLPNTGLDDAYTIVDKARERVSDTPCETAAG-KIRLTVSIGLVEYHIAGEDLSEVMKRA 265

Query: 241 DQALYVAKKSGRN 253
           D  LY+AKK+ RN
Sbjct: 266 DDNLYIAKKT-RN 277


>gi|315128100|ref|YP_004070103.1| GGDEF domain-containing protein [Pseudoalteromonas sp. SM9913]
 gi|315016613|gb|ADT69951.1| GGDEF domain-containing protein [Pseudoalteromonas sp. SM9913]
          Length = 619

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/181 (37%), Positives = 96/181 (53%), Gaps = 15/181 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQI 142
           L+EL      + QL+  D L+G+ N   F   +      S  E+  LSI+  DID FK I
Sbjct: 438 LRELEDKNRELEQLNMEDALTGVKNRRFFDKKIIMEIRRSRREQTPLSIIMLDIDKFKAI 497

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD+VI  + D +      P+  V R GGEEF      ++ Q A  +A  +R 
Sbjct: 498 NDTYGHLTGDQVIRAVCDVIKQQLKRPLDEVARYGGEEFVVLLPNTNNQGALAIAEQIRC 557

Query: 202 IIENSQINISSGPSIHITISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            IE + +++ +G +I  TISAG    IA+  H     T    AD+ALY+AK+ GRN+VV 
Sbjct: 558 AIEKNTVSV-AGTTIKYTISAGVYTHIADDVHNP--ETFTECADKALYLAKQHGRNQVVN 614

Query: 258 F 258
           F
Sbjct: 615 F 615


>gi|218533379|ref|YP_002424194.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
 gi|218525682|gb|ACK86266.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
          Length = 184

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 89/167 (53%), Gaps = 17/167 (10%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           Q +  D L+ LLN  A +   G      S +  L+++  DID+FK IND +GH VGD VI
Sbjct: 17  QQADTDHLTQLLNRGALMRRAGDALANASASAPLTLLQIDIDHFKGINDRYGHDVGDVVI 76

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP- 214
             ++    V+  T    GRLGGEEFA    G     AA++A+ +R     SQ   ++ P 
Sbjct: 77  RCVAR---VLRETGAITGRLGGEEFAVLMPGHGLAGAAVVAHRIR-----SQCAATAVPR 128

Query: 215 --SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              +  T S G+AE    + I T++ RAD ALY AK+ GRNRV   S
Sbjct: 129 QRDLQFTASIGLAEWTTGDTIDTLLKRADLALYAAKRGGRNRVAVTS 175


>gi|94500875|ref|ZP_01307401.1| diguanylate cyclase (GGDEF domain) [Oceanobacter sp. RED65]
 gi|94426994|gb|EAT11976.1| diguanylate cyclase (GGDEF domain) [Oceanobacter sp. RED65]
          Length = 294

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 95/191 (49%), Gaps = 10/191 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-- 129
           VI   ++S+LL  +  ++ ++  +    + + +  D L+GL N   F        E++  
Sbjct: 103 VIKPYSLSVLLARVRSALREKERLDL--MEKWATTDPLTGLYNRRFFFEQAQRELERVQR 160

Query: 130 -----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
                S +  DID+FK++ND +GH VGD V+  L+      F       R GGEEF    
Sbjct: 161 NETDASFIILDIDHFKKVNDEYGHLVGDDVLEGLAKLFKETFRKVDLCCRFGGEEFVICL 220

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +  + A ++A   RK +E    N   GP +H+TIS G++       +  ++ RAD AL
Sbjct: 221 PDTDTEGALLVAERTRKKVEELSFNTEKGP-LHVTISLGVSSANENTTLEDMLKRADDAL 279

Query: 245 YVAKKSGRNRV 255
           Y AK++GRNR 
Sbjct: 280 YQAKQNGRNRT 290


>gi|304392567|ref|ZP_07374507.1| diguanylate cyclase [Ahrensia sp. R2A130]
 gi|303295197|gb|EFL89557.1| diguanylate cyclase [Ahrensia sp. R2A130]
          Length = 417

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 90/169 (53%), Gaps = 10/169 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF------ISSLGSYNEKL--SIVFFDIDYFKQINDNFGHPV 150
           R+ + ++ID ++ LLN   F      + S G   E    S+V  DID FK IND  GH  
Sbjct: 222 RLQRRTQIDSMTTLLNKHTFEIQANLLISPGRSAEGRGHSLVVCDIDNFKAINDTLGHAA 281

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VIA++   L     T    GR+GGEEFA      +EQ+AA +A  LR ++ +  ++I
Sbjct: 282 GDVVIAWIGRILGNTVRTSDLAGRVGGEEFALLLRDCNEQDAAAVAEALRDVVSSHAMDI 341

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             G  I +T S G+A     E    +  RAD+ LY AK++GRN  VC +
Sbjct: 342 -EGRKIAVTASFGVAHAHFSESFPELFDRADKQLYRAKENGRN-CVCVA 388


>gi|114799302|ref|YP_761250.1| putative diguanylate cyclase [Hyphomonas neptunium ATCC 15444]
 gi|114739476|gb|ABI77601.1| putative diguanylate cyclase [Hyphomonas neptunium ATCC 15444]
          Length = 409

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 12/176 (6%)

Query: 95  ISYNRISQL---SRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQIN 143
           I+ + I QL   +R D LSGLLN   F ++  +        +N  + ++  D+D+FKQIN
Sbjct: 215 IAIDLIDQLRHEARADKLSGLLNRGGFEAAADALLKRHKPGHNLPVCLIIADLDHFKQIN 274

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGH VGD VI      +  +    M  GR+GGEEFA    G   Q A + A  LR   
Sbjct: 275 DTFGHSVGDAVIGLFGRHVAAMTSEEMIAGRIGGEEFAVLLPGHEIQAARLFAESLRACP 334

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +    +  G  +  ++S G+A       + +++  AD+ALY AK++GR++V  F 
Sbjct: 335 WDYWSGMLPG-GLAPSVSIGVAGGWPGVDLYSLMNNADEALYDAKRAGRDQVRLFG 389


>gi|239907560|ref|YP_002954301.1| putative signaling protein [Desulfovibrio magneticus RS-1]
 gi|239797426|dbj|BAH76415.1| putative signaling protein [Desulfovibrio magneticus RS-1]
          Length = 893

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 87/163 (53%), Gaps = 11/163 (6%)

Query: 103 LSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+G+ N         A +SS   YN + S+  FDID FK +ND +GH  GD V+
Sbjct: 708 LATKDGLTGVSNRHHFMEISGALLSSATRYNTEFSVAIFDIDNFKMVNDTWGHSAGDMVL 767

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +       F +   +GRLGGEEFA +   +S + AA      R I+E++       P 
Sbjct: 768 KKICTLATAEFRSSDIIGRLGGEEFAISMPETSLENAAAAVERFRTIVESTIFEYDEIP- 826

Query: 216 IHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256
           I+ITIS+G+A  C  H + I  ++  AD  LY AK+ GRN+ V
Sbjct: 827 INITISSGVAA-CSKHTKAIDCLLKSADNFLYKAKRHGRNQTV 868


>gi|114797095|ref|YP_760220.1| putative diguanylate cyclase/response regulator [Hyphomonas
           neptunium ATCC 15444]
 gi|114737269|gb|ABI75394.1| putative diguanylate cyclase/response regulator [Hyphomonas
           neptunium ATCC 15444]
          Length = 313

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/179 (36%), Positives = 95/179 (53%), Gaps = 19/179 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL    ++++ L+  D L+GL N         A  + L      LS++  DID+FKQ ND
Sbjct: 121 ELKSLRDQLANLAVTDALTGLKNRRYLERTLRAECARLARDEAWLSVIMLDIDFFKQFND 180

Query: 145 NFGHPVGDKVIAFLSDQLVVVF----GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +GHP GD+ IA ++  L  V      TP    R GGEEFA         EA I+A ++R
Sbjct: 181 TYGHPAGDRCIAMIAATLKRVVKRASDTP---ARYGGEEFACILPDLGPAEAEIVAQEIR 237

Query: 201 KIIENSQI-NISSGPSIHITISAGIAE-RCHK--EPISTIIYRADQALYVAKKSGRNRV 255
           + +    I +I S    ++T+S G+A  RCH   EP + I + ADQ LY +K +GR+RV
Sbjct: 238 RQVHALNIPHIRSQAEPYVTVSIGVASARCHSSIEPGTWITF-ADQELYRSKAAGRDRV 295


>gi|46201874|ref|ZP_00054171.2| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 352

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 106/208 (50%), Gaps = 10/208 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           +L E   +  ++  + L L   SG + + L    + + + +  D L+ L N   F  SL 
Sbjct: 138 MLAETKVMADLNRQLELRLENSSGEVAR-LRNQLDDLKREASTDALTQLANRKLFDHSLN 196

Query: 124 -------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                  +    LS++  DID+FKQ ND +GH +GD+V+  ++  L  +        R G
Sbjct: 197 LAVLDAQASEAPLSLLMIDIDHFKQFNDTYGHQLGDQVLKLVARSLSEIAQAKDTAARYG 256

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITISAGIAERCHKEPIS 234
           GEEFA     +  +++  +A  +R  +   ++ N  +G  +  +T+S G A     EP  
Sbjct: 257 GEEFAVILPATPLEKSMEVAEAIRNQVSTKRLTNRRTGQVLGQVTLSIGAARLKDAEPAD 316

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIE 262
           ++++RAD+A+Y+AK+ GRNRV    D+E
Sbjct: 317 SLVHRADEAMYLAKRDGRNRVKNEIDLE 344


>gi|294653542|ref|NP_714784.2| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
 gi|293630746|gb|AAN51799.2| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
          Length = 507

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 38/247 (15%)

Query: 30  YFSIFFSIFIATVIFIANI----FLFYI--GLTPFYGLEYILVENLSLVIISITISLLLG 83
           Y+  FF I    V  +  I    FLF +   L PF+GL        +L I+SI       
Sbjct: 276 YYWAFFEIKDQEVRLVHRISAVEFLFSVILNLLPFWGL------ICTLGIVSIL------ 323

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDI 136
           YI      +L  S  ++S++   D L+G+ N   F+        ++  + +  +I+  DI
Sbjct: 324 YI------KLKASMEQVSKMIHTDPLTGIANRRGFLKLTQKSLVTIHRHGQSWTILMIDI 377

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FKQ+ND FGH  GD+++  +S  L         V R GGEEFA    G + +++  +A
Sbjct: 378 DHFKQVNDRFGHDTGDRILIKVSQILSANIRQTDVVCRWGGEEFAVFLFGVTPEDSINIA 437

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR----ADQALYVAKKSGR 252
             LRK +E+  +     P   +T+S GI+E    +   + +      ADQALY AK  GR
Sbjct: 438 EHLRKEVESKVVLKDGKP---VTLSIGISEGKSGKSSGSGLENAFACADQALYQAKTLGR 494

Query: 253 NRVVCFS 259
           NRV  F 
Sbjct: 495 NRVCVFD 501


>gi|162456680|ref|YP_001619047.1| GAF/GGDEF domain-containing protein [Sorangium cellulosum 'So ce
           56']
 gi|161167262|emb|CAN98567.1| putative membrane protein (GAF and GGDEF domain) [Sorangium
           cellulosum 'So ce 56']
          Length = 859

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/174 (36%), Positives = 97/174 (55%), Gaps = 15/174 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +L+ +D L+GLLN  A        I++   ++ +LS++  DID+FK++ND +GH VG
Sbjct: 543 RLEELATMDGLTGLLNKRAMLEVADQKITAARRFSRRLSVLVTDIDHFKKVNDTYGHDVG 602

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI- 210
           D +I  L D L     T   V R GGEEF      +  + A +LA  +R+ +  +  +  
Sbjct: 603 DVIIKGLGDVLRRAKRTTDAVARFGGEEFVVICEETDARGAMLLAERVREELGRTTFHAA 662

Query: 211 -SSGP-SIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFS 259
            SSGP    +T S GIA   + E  ST   +   AD++LYV+K+SGRNR   +S
Sbjct: 663 GSSGPVQCQVTCSIGIA--TYPEAGSTWEELFKAADESLYVSKRSGRNRSTAWS 714


>gi|260365590|ref|ZP_05778117.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
 gi|308112925|gb|EFO50465.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
          Length = 280

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 9/164 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S++SR D L+GL N + +  SL          +   S+V FDID+FK++ND +GHP GD
Sbjct: 112 LSEISRKDGLTGLFNRAFWEQSLKDEFAHLKVIDGPCSLVIFDIDHFKKVNDTYGHPTGD 171

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +VI   S  L     +    GR GGEEF      +++++A   A  LRK IE   + +  
Sbjct: 172 EVIRRTSALLRKTARSSDICGRFGGEEFTVLLPHTNQEQACYFAERLRKRIEQEIVKVED 231

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
              I+ TIS G+ E + + E  +  +  AD ALY AK++GRN+ 
Sbjct: 232 F-LINYTISIGVCEYKPYFESHTQWLKSADAALYRAKENGRNQT 274


>gi|114704944|ref|ZP_01437852.1| periplasmic sensor diguanylate cyclase (GGDEF) [Fulvimarina pelagi
           HTCC2506]
 gi|114539729|gb|EAU42849.1| periplasmic sensor diguanylate cyclase (GGDEF) [Fulvimarina pelagi
           HTCC2506]
          Length = 367

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 116/226 (51%), Gaps = 21/226 (9%)

Query: 50  LFYIGLTPFYGLEYILV-------ENLSLVIISITISLLLG-YISGSILKELFISYN--- 98
           LF +GL     L +IL        E+    +  +T++  LG  + G +L + + ++    
Sbjct: 136 LFAMGLASNIPLLFILTVPVPNAAEHFMRAVGPLTVADTLGVLVLGRVLSDAWRAHQSAE 195

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
           R+S  +  D L+GL N   F   +G   ++       +S++  D+D+FK+IND+FGH  G
Sbjct: 196 RLSVEATTDPLTGLSNRRHFERRVGPLLQQANHQGTPVSLLVIDVDHFKRINDSFGHEAG 255

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+ ++++ +         + R GGEE   A  G+  + A  +A  +R +IE ++  I 
Sbjct: 256 DTVLVWIAEIVRSQVRGCDIIARYGGEELVVAMPGADSRRAMTVAERIRAVIE-AKGRIE 314

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            G    IT+S G++ R  +   + +   AD+ALY AK+ GRNRVV 
Sbjct: 315 PGDGHRITVSIGVSTRLAR--YADLFSAADEALYAAKRQGRNRVVT 358


>gi|330963101|gb|EGH63361.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 425

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 92/165 (55%), Gaps = 11/165 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +++  D L+GL N  A        I++     +  S +  DID+FK +ND +GHP 
Sbjct: 255 QKLLEIAHSDPLTGLDNRRAAEHTLERMINTARISGKPFSFIICDIDHFKSVNDQYGHPA 314

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  ++  L           R GGEEF      SS ++AA LA+ +RK +EN +I  
Sbjct: 315 GDSVLKSVAAILKHRIRAVDVAARWGGEEFLILVPDSSLKQAAELADRIRKGVENLEIP- 373

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +GP   +TIS G++E    E  +++I RAD+ALY AK+ GRNRV
Sbjct: 374 EAGP---VTISLGVSELSPGETAASLIQRADKALYQAKRLGRNRV 415


>gi|330958950|gb|EGH59210.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 794

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 93/184 (50%), Gaps = 18/184 (9%)

Query: 87  GSILKELFIS----YNRISQ----LSRIDCLSGLLNH-------SAFISSLGSYNEKLSI 131
           GS+L   F+S      R+ Q    LS  D L+G  N         A +  +  +   LSI
Sbjct: 609 GSVLWHGFVSDITDLKRVEQELRALSVTDVLTGAYNRRFFQDRMQAELKRIDRHGGDLSI 668

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  D+D+FK+IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +
Sbjct: 669 IMLDVDHFKRINDRFGHAAGDQVLRSISEKISQRLRSDDVFCRLGGEEFMVVCPGTRSAQ 728

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A  LA  LR+ + N  I    G    +T S GIA R   E I  ++ RAD  +Y AK+ G
Sbjct: 729 AYQLALSLREALRNQVIE---GVDHVVTASFGIASRRAGEGIDAMLLRADSGVYAAKQGG 785

Query: 252 RNRV 255
           R+RV
Sbjct: 786 RDRV 789


>gi|222083128|ref|YP_002542493.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
 gi|221727807|gb|ACM30896.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
          Length = 578

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 96/181 (53%), Gaps = 12/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFK 140
           +I  EL  +  R+  L+  D L+GL N   F ++L      +  +K  L ++  D+D+FK
Sbjct: 391 AIEDELQDANRRLQALAEQDGLTGLANRRFFDNALLREAGRACQDKTSLGLLMIDVDWFK 450

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GHP GD+ +  +   +  +   P  V  R GGEEFAA    + E  AA +A  +
Sbjct: 451 AFNDCYGHPAGDECLKRIGGTIQKIVSRPGDVAARYGGEEFAALLPDTDEPAAAAIAEQI 510

Query: 200 RKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R+ +    I     P+   TIS G A   E    EP +T+++ AD+ALY AK++GRNRV 
Sbjct: 511 RQAVLELAIEHRVSPNQVATISVGAAALTEGAVTEP-ATLLHNADRALYRAKENGRNRVA 569

Query: 257 C 257
           C
Sbjct: 570 C 570


>gi|242238673|ref|YP_002986854.1| diguanylate cyclase [Dickeya dadantii Ech703]
 gi|242130730|gb|ACS85032.1| diguanylate cyclase [Dickeya dadantii Ech703]
          Length = 490

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 110/204 (53%), Gaps = 16/204 (7%)

Query: 61  LEYILVENLSL-VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF- 118
           L ++L++N  L +++S+T+ +L+    G+  +       R+  ++  D L+GL+N  AF 
Sbjct: 292 LWFMLLKNTGLSILVSVTMLILIWLTIGAYQR-------RLELMATTDKLTGLMNRQAFE 344

Query: 119 --ISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             + +L     + +   S++  D+D+FK+IND +GH +GD+V+   +  +        F 
Sbjct: 345 YIVRTLRMKQSAQHHTFSLILIDLDHFKKINDKYGHNIGDRVLVRAASLIKRAIRKTDFA 404

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232
            R GGEEF       S  +A  +A  +R+ +  + ++      I +T+S G+AE    E 
Sbjct: 405 CRWGGEEFVVLLGECSLHQAHQIAEKIRQAVRFALVS-HRHQVIDLTLSCGVAESHSGES 463

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
           +  ++ RAD+ALY AK+ GR+R V
Sbjct: 464 LDHLVQRADKALYQAKRQGRDRAV 487


>gi|218886116|ref|YP_002435437.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757070|gb|ACL07969.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 552

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 13/176 (7%)

Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +LS  D L+GL N        +  +S      +  + +  D+D+FK IND  GH  GD
Sbjct: 350 LERLSGTDELTGLANRRLLADAGARIVSICRRAGQPCACLMLDLDHFKHINDVHGHATGD 409

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  L+  ++    +  F  R+GGEEFA  A  +    A  LA  LR+ +E   +  + 
Sbjct: 410 EVLRRLAAAIMATVRSSDFAVRMGGEEFAIIAPNTDATHAMALAERLRRNVERIDLRQAD 469

Query: 213 GPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            P + + IS G+A      R    P+  ++ RAD ALY AK++GRNRVV + D E 
Sbjct: 470 MP-VPVAISVGVAGMTVTPRYGAGPLEDLLARADHALYRAKQAGRNRVVLWDDAER 524


>gi|47568531|ref|ZP_00239230.1| GGDEF family protein [Bacillus cereus G9241]
 gi|47554773|gb|EAL13125.1| GGDEF family protein [Bacillus cereus G9241]
          Length = 351

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 117/233 (50%), Gaps = 24/233 (10%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91
           SIFI  + F  N++   I + P      +L +++S+V + +  S +  YI+      +L+
Sbjct: 126 SIFIRWIWF--NVYSLSILIVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQ 179

Query: 92  --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
             ELF    ++ Q + ID L+GL N   F       IS+  + N+ L ++F DID+FK +
Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNRHISNKRTKNDSLCLLFIDIDHFKSV 236

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GHP GD+V+  +   L  +   P    R GGEEFA             +   +R  
Sbjct: 237 NDTYGHPAGDEVLKQIGCILREISPFPDLAFRKGGEEFALLIPQKGLAYGMHMGEQVRTA 296

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E     +  G  I IT+S GI+   +++     I  AD ALY +K++GRN+V
Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|262280505|ref|ZP_06058289.1| GGDEF domain-containing protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258283|gb|EEY77017.1| GGDEF domain-containing protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 397

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 134/282 (47%), Gaps = 26/282 (9%)

Query: 7   DFLSIWLCHEKNL-ESFSPHTFMIYFS-------------IFFSIFIATVIFIANIFLFY 52
            F ++ LCH+  L  S SP T + Y               ++ ++  ATVI     +L  
Sbjct: 111 QFFTLMLCHDGYLIGSISPATMVGYVGTIGVGLVLFDRKIVYSALVPATVILTVCTYLSM 170

Query: 53  IGLTPFYGLEYILV----ENLSLVIISITISLLLGYISGSILKELFISYNR-----ISQL 103
            G  P+  L  ++     +     + S+   ++   ++  IL E+ ++  R     I +L
Sbjct: 171 KGTLPYAPLFNLIAMQRAQTNPFWLGSMAFFIMPILLACFILFEILLTQWRQRETYIQRL 230

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           S++D L+ +LN  +  + L S +++    ++V  DID+FK+IND +GH  GD+V+  ++ 
Sbjct: 231 SQLDPLTNVLNRRSLNTHLESLHQQQFDYAVVLLDIDHFKKINDIYGHHQGDQVLIEIAQ 290

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            L     +   +GR GGEEF      +   +A  +A   R  +E   +  +    IHI+ 
Sbjct: 291 CLSKNLRSEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRHALEELPVFSTQNNPIHISA 350

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           S GI+     +    +I +ADQALY  K SGRN+V  F   E
Sbjct: 351 SFGISSSAFAKDPYLVIRQADQALYAVKASGRNQVRTFHQTE 392


>gi|209885029|ref|YP_002288886.1| ggdef domain [Oligotropha carboxidovorans OM5]
 gi|209873225|gb|ACI93021.1| ggdef domain [Oligotropha carboxidovorans OM5]
          Length = 414

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 80/157 (50%), Gaps = 9/157 (5%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+GLLN   F       I         ++ + FDID+FK +ND +GH  GD V+   
Sbjct: 225 IDPLTGLLNRRGFREATTRMIEREAKAGRPITAMIFDIDHFKAVNDTYGHATGDDVLRVF 284

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           ++  V        +GR+GGEEF AA L    +EA + A  +R   E + I +   P +  
Sbjct: 285 ANVAVGALRVTDLLGRVGGEEF-AALLPCGMEEALVAAERVRDAFEQAGIAVDGAP-LAT 342

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T+S G+A       +  ++  AD ALY AK+ GRNRV
Sbjct: 343 TVSIGVAGGPASTELDVLLASADTALYRAKRGGRNRV 379


>gi|221065824|ref|ZP_03541929.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Comamonas testosteroni KF-1]
 gi|220710847|gb|EED66215.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Comamonas testosteroni KF-1]
          Length = 868

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/180 (35%), Positives = 100/180 (55%), Gaps = 15/180 (8%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           +S  RI QL+  D L+GL N S         I+S  +++ +L+++F D+D FKQ+ND+ G
Sbjct: 421 LSRARIRQLAFYDGLTGLPNRSLLQAKADQAIASAATHDAQLAVLFIDLDRFKQVNDSLG 480

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--N 205
           HPVGD+++  ++ +L  V  +    GRL G+EF A        +A  +AN + ++ E   
Sbjct: 481 HPVGDELLRSVAARLQRVLRSSDIAGRLSGDEFVAVL---PHCDAEYVANTIERLQELLA 537

Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             +NI+   S+ I+ S GIA        + T+++RAD A+Y AK  GR R  CF   E N
Sbjct: 538 EPLNIAD-TSLAISASIGIAMFPSDGRDMETLVHRADMAMYQAKSKGRGR-FCFFSSEMN 595


>gi|323493890|ref|ZP_08099007.1| sensory box/GGDEF family protein-like protein [Vibrio brasiliensis
           LMG 20546]
 gi|323311831|gb|EGA64978.1| sensory box/GGDEF family protein-like protein [Vibrio brasiliensis
           LMG 20546]
          Length = 633

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 89/170 (52%), Gaps = 18/170 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGH 148
           NR+ +LS  D ++ L N   F + + S          NE  ++   DID+FK+IND +GH
Sbjct: 464 NRLRELSEKDAMTSLWNRRKFDAEMQSQVQRTKRYKQNEVTALALIDIDHFKRINDTYGH 523

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+VI  +++ L         + R+GGEEFA     ++  EA ++ N LR     + I
Sbjct: 524 DRGDEVIKAVANSLTHHLRETDIIARIGGEEFAIIMPHTALAEAEVVVNRLR-----TAI 578

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           N+ S   ++IT+SAGI E            RAD ALY +K SGRN+V  F
Sbjct: 579 NLES--DLNITVSAGITELSSSS--EQTYKRADIALYESKSSGRNQVSVF 624


>gi|295700625|ref|YP_003608518.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
 gi|295439838|gb|ADG19007.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
          Length = 241

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 89/169 (52%), Gaps = 8/169 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVF--FDIDYFKQINDNFGH 148
           +E+ +   +++  +  D L+G+LN SA I          S V    DID FK+IND++GH
Sbjct: 72  REMQVLAQQLAYRASHDALTGVLNRSAVIERTTKVLRTSSAVMIILDIDEFKRINDDYGH 131

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           P GD VI+ + D L  + G   F+GR+GGEEF     G      AILA  +R+ I +S +
Sbjct: 132 PTGDAVISGVVDCLRRIVGEQGFIGRVGGEEFTVLLPGHEPASGAILAERMREAISDSLV 191

Query: 209 NISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                P +   IT S G++         T    AD ALY AK+SGRNRV
Sbjct: 192 V----PPVERRITASFGVSINAVGTCFDTAYGLADAALYRAKRSGRNRV 236


>gi|254492479|ref|ZP_05105651.1| GGDEF domain protein [Methylophaga thiooxidans DMS010]
 gi|224462371|gb|EEF78648.1| GGDEF domain protein [Methylophaga thiooxydans DMS010]
          Length = 345

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 90/166 (54%), Gaps = 12/166 (7%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           ++ D L+GL N  AF   +    +        + I+F D+D FK++ND  GH VGD+V+ 
Sbjct: 177 AKTDTLTGLANRKAFDELVTKVTQDADNSGLDVCILFCDLDIFKEVNDKHGHLVGDQVLK 236

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +S+ L         V R GGEEF+   L +S Q A ILA+++RK I + +I        
Sbjct: 237 VVSNTLKDSVKGRDLVARYGGEEFSIILLNTSLQNAKILADNIRKEIASKRIQRKDTRES 296

Query: 217 --HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              IT+S G+A     E + + + RAD+ALY++K+ GRN   C S+
Sbjct: 297 LGQITMSFGVARYVPTEGVESFMQRADRALYMSKRKGRN---CVSE 339


>gi|254250546|ref|ZP_04943865.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
 gi|124879680|gb|EAY67036.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
          Length = 502

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 11/179 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQ 141
           L++ F     ++ L+R D L+GL N  A  ++L    E+L        S++F D D+FKQ
Sbjct: 318 LRDNFRKQTLLTDLTRTDPLTGLRNRRALDTALADEWERLQRGSGGSLSVLFIDADHFKQ 377

Query: 142 INDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND  GH  GD  + FL++ +            R GGEEF A    + E  AA +A  +R
Sbjct: 378 YNDQHGHAQGDTALRFLAECIRAHTRRRGDLAARYGGEEFVAVLPDTDENGAAQVAEAIR 437

Query: 201 KIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +E +++     + P   ++I      R     +  + ++AD ALY AK+ GRNRV C
Sbjct: 438 REVEGNRLVGFAETVPPFTVSIGCATGRRARHASMLALSHQADMALYRAKREGRNRVCC 496


>gi|94312156|ref|YP_585366.1| diguanylate cyclase [Cupriavidus metallidurans CH34]
 gi|93356008|gb|ABF10097.1| conserved hypothetical protein; GGDEF-family protein [Cupriavidus
           metallidurans CH34]
          Length = 599

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 124/255 (48%), Gaps = 34/255 (13%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE----NLSLVIISIT-----ISLL 81
           F+I F++ + T+I++ ++F   I L PF+     ++     NLS+ + S       I  L
Sbjct: 340 FAIAFAL-LGTMIWLHSLFRRQI-LKPFFAATRSILAIANGNLSVRVPSPNNYRGEIRAL 397

Query: 82  LGYISGSILKELFISYNRISQ-----------LSRIDCLSGLLNHSAF-------ISSLG 123
           L  +    LK   +   ++ Q           ++  D L+ LLN  A         +S  
Sbjct: 398 LEAVH--TLKRYSLDKQQLEQDRQRLIAQLTTMAETDALTQLLNRRALEARACDLCASPA 455

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
           +    +++V FDID+FK+IND +GH  GD+ +  +      V GT     R GGEEFA  
Sbjct: 456 ADKPYVALVMFDIDHFKRINDTYGHIAGDRALEIVGAVCREVLGTGDLAARFGGEEFAVV 515

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRA 240
           +L S+  EA  LA  L++ +   ++ + S     +T+S G+A        + +S +I +A
Sbjct: 516 SLVSTPGEALRLAEQLKEKLREIRVTLESARPFGMTVSLGVAIGRREDVGQDLSALIRQA 575

Query: 241 DQALYVAKKSGRNRV 255
           D  LY AK+ GRNR+
Sbjct: 576 DLMLYRAKRGGRNRI 590


>gi|186472966|ref|YP_001860308.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia phymatum
           STM815]
 gi|184195298|gb|ACC73262.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia phymatum
           STM815]
          Length = 312

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 9/168 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ + +  D L+G+ N   F + L         Y  +LSI+ FD+D+FK+IND FGH VG
Sbjct: 145 KLQEYADRDGLTGIANRRYFEARLRDEYTRWQRYGGELSILLFDLDHFKKINDQFGHVVG 204

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++ ++  V       GR GGEEFA     +  ++A ++A  +R  I +  +++ 
Sbjct: 205 DTVLREMAQRVAHVVRAQDTFGRFGGEEFALLLPCTPLEDAMLVAEKIRNTIGDRPVDV- 263

Query: 212 SGPSIHITIS-AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            G ++ +T S  G A R        +I  AD ALY AK+ GRNR V F
Sbjct: 264 QGVNVPVTASVGGAAARAGVPAYEALINEADAALYSAKRQGRNRSVAF 311


>gi|189425170|ref|YP_001952347.1| diguanylate cyclase [Geobacter lovleyi SZ]
 gi|189421429|gb|ACD95827.1| diguanylate cyclase [Geobacter lovleyi SZ]
          Length = 392

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 8/165 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+  + R D L+GL N    ++ L         +N+  S++  D+D FKQ+ND FGH  G
Sbjct: 220 RLELMVRTDILTGLANRMEMLNQLEVELKRSERHNKTFSLILGDLDLFKQVNDTFGHLAG 279

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  +  QL     +     R GGEEF      +S ++A I+A  L   +   +I   
Sbjct: 280 DRVLRQIGTQLKDNLRSEDVCARWGGEEFMVLLPETSLEQAVIVAEKLAAAVRGKEIVWD 339

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + P IH+T+S G+   C    I   I + D ALY AK +GR+RVV
Sbjct: 340 TQP-IHLTMSFGVGAFCAGCSIDEFIQQVDNALYAAKNAGRDRVV 383


>gi|78484435|ref|YP_390360.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78362721|gb|ABB40686.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Thiomicrospira crunogena XCL-2]
          Length = 420

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 93/187 (49%), Gaps = 25/187 (13%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           +G  + E       ++ L+  D L+G+ N           +  +  Y  +  ++ FD+DY
Sbjct: 245 TGKDVSEQVKMQQELNDLAMKDALTGIWNRRHLTDVVNTEMKRVNRYGGRFGMIMFDVDY 304

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQIND+FGH +GD+ +  ++  +  +     ++GR GGEEF   AL       A LA  
Sbjct: 305 FKQINDDFGHDIGDETLVQIAKIVQKIVRETDYIGRWGGEEFLLIALELDASLTAKLAEK 364

Query: 199 LRKIIEN------SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSG 251
           +R+ IE        Q+ +S G +++           HK E  + +  RAD+ALY+AK+ G
Sbjct: 365 IREAIEEFVFPKVGQVTVSLGATVY-----------HKNETEAQLFKRADEALYLAKRHG 413

Query: 252 RNRVVCF 258
           RNRV  +
Sbjct: 414 RNRVEVY 420


>gi|300690033|ref|YP_003751028.1| diguanylate cyclase (GGDEF domain) [Ralstonia solanacearum PSI07]
 gi|299077093|emb|CBJ49714.1| putative diguanylate cyclase (GGDEF domain) [Ralstonia solanacearum
           PSI07]
          Length = 458

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 107/208 (51%), Gaps = 12/208 (5%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           + L + +    S+    + + +L+  ++ ++ + LF ++  + Q+S  D L+G+ N S F
Sbjct: 242 FTLGWYVARVFSMFAPGVLVCVLVWEVT-TLYRRLFEAHVSLQQMSTHDALTGIYNRSYF 300

Query: 119 ISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPM 170
              L              S+V  D+D+FK+ ND FGH  GD  +A ++  L  V+     
Sbjct: 301 NDQLPRAFDAARRGGRPFSLVMIDVDHFKRYNDTFGHLKGDGCLAAVASALEGVMHRHAG 360

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
           F+ R GGEEFA     ++ ++A +LA   R+ +   +I  +  PS ++TISAG A    +
Sbjct: 361 FIARYGGEEFAVVLPDATPRDALLLAESAREAVLRLRIE-APAPSRYVTISAGCATAAPE 419

Query: 231 EPIS--TIIYRADQALYVAKKSGRNRVV 256
            P S   ++  AD  LY AK +GRN VV
Sbjct: 420 SPASLEALVEAADATLYRAKAAGRNLVV 447


>gi|34556779|ref|NP_906594.1| GGDEF domain protein [Wolinella succinogenes DSM 1740]
 gi|34482493|emb|CAE09494.1| GGDEF DOMAIN PROTEIN [Wolinella succinogenes]
          Length = 436

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 7/161 (4%)

Query: 98  NRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            ++ + +  D L+G+ N       +    + +E   ++FFDID+FKQIND +GH  GD++
Sbjct: 275 KKLQRQATTDTLTGIDNRFRLQEILEEWKARDESYGVIFFDIDHFKQINDEYGHDKGDEI 334

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  L+  +           RLGGEEF     G+S  +A  +A  LR+ IE     +    
Sbjct: 335 LVGLARLIKTELRDEDIFARLGGEEFVVLLKGASLPKATEIAQRLRQAIEQHPFPMQR-- 392

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              ++ S G+A+   +E     I RAD A+Y+AK++GRNRV
Sbjct: 393 --RVSCSFGVAKNQFREEPEETIKRADLAMYLAKRAGRNRV 431


>gi|157369436|ref|YP_001477425.1| diguanylate cyclase [Serratia proteamaculans 568]
 gi|157321200|gb|ABV40297.1| diguanylate cyclase [Serratia proteamaculans 568]
          Length = 353

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 99/186 (53%), Gaps = 14/186 (7%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132
           +LLG ++    K L      + ++S  D L+GL N   +         S   Y    +++
Sbjct: 165 ILLGLVTYRTAKRLAEKKQELLRISMRDGLTGLYNRRHWEHLLHHQFDSCRRYQHSATLI 224

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK IND FGH +GD+ +A L+++L++       VGR GG+EF A    +S ++A
Sbjct: 225 LMDIDHFKTINDTFGHALGDEALAVLAEELLIGLRAVDIVGRYGGDEFGAVLPNTSAEQA 284

Query: 193 AILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKK 249
           +I    L +I E  ++I     P + + ISAGIA+  H +    + +   AD ALY AK 
Sbjct: 285 SI---ALLRIQERLNEIVFREAPQLRLNISAGIAD-YHGDMSGYLDWLKAADNALYRAKN 340

Query: 250 SGRNRV 255
           +GRNR+
Sbjct: 341 NGRNRL 346


>gi|149174472|ref|ZP_01853098.1| GAF domain/GGDEF domain protein [Planctomyces maris DSM 8797]
 gi|148846582|gb|EDL60919.1| GAF domain/GGDEF domain protein [Planctomyces maris DSM 8797]
          Length = 503

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 91/170 (53%), Gaps = 13/170 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           + RI +++  D L+GL NH+ F       ++   + + +LSI+  DID+FK  ND +GH 
Sbjct: 325 FKRIEEMASRDGLTGLFNHATFQEKLHELVTQADAQSSQLSIIMSDIDHFKSFNDTYGHQ 384

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++     V      + R GGEEF    L     +A  +A DLR+ + N  I 
Sbjct: 385 AGDFVLKEVARIWKTVMPEKAIIARYGGEEFIGVLLDHEYSQAMQIAEDLRETLVNCPI- 443

Query: 210 ISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256
           +  G  + +T S G+ E   K P +T   ++  AD+ LY AK+SGRN+VV
Sbjct: 444 LFEGQQLQVTASFGVTE--FKYPATTTNELVRIADENLYKAKESGRNQVV 491


>gi|107029170|ref|YP_626265.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
 gi|116687041|ref|YP_840288.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
 gi|105898334|gb|ABF81292.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
 gi|116652756|gb|ABK13395.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
          Length = 502

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 11/179 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQ 141
           L++ F     ++ L+R D L+GL N  A  ++L    E+L        S++F D D+FKQ
Sbjct: 318 LRDNFRKQTLLTDLTRTDPLTGLRNRRALDTALADEWERLQRGSGGSLSVLFIDADHFKQ 377

Query: 142 INDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND  GH  GD  + FL++ +            R GGEEF A    + E  AA +A  +R
Sbjct: 378 YNDQHGHAQGDTALRFLAECIRAHTRRRGDLAARYGGEEFVAVLPDTDENGAAQVAEAIR 437

Query: 201 KIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +E +++     + P   ++I      R     +  + ++AD ALY AK+ GRNRV C
Sbjct: 438 REVEGNRLVGFAETVPPFTVSIGCATGRRARHASMLALSHQADMALYRAKREGRNRVCC 496


>gi|296125463|ref|YP_003632715.1| diguanylate cyclase [Brachyspira murdochii DSM 12563]
 gi|296017279|gb|ADG70516.1| diguanylate cyclase [Brachyspira murdochii DSM 12563]
          Length = 342

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 96/187 (51%), Gaps = 17/187 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
              ++K+L    + +   S ID L+GL N   F       +     Y   +SI+F D+D+
Sbjct: 155 KDKVIKKLMKEIDTLHAQSTIDPLTGLFNVRYFNKVIEEEVDRAKRYKYSISIIFMDLDH 214

Query: 139 FKQINDNFGHPVGD-------KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           FK IND +GH  G+       K+++  SD  + +        R GGEEF      + +++
Sbjct: 215 FKDINDIYGHDCGNLVLHEIGKLLSNASDNNIHMLRKSDVAIRYGGEEFIVICPNTKKEQ 274

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKK 249
           A I+A  +RK +E  + N  S   I++T+S GIAE     K+PI+  I  AD A+Y AK 
Sbjct: 275 AYIVAERIRKTVEKKRFNYES-TIINVTVSVGIAEHKGTSKKPIAETIKNADSAMYEAKH 333

Query: 250 SGRNRVV 256
            GRN+V+
Sbjct: 334 LGRNKVI 340


>gi|330501090|ref|YP_004377959.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328915376|gb|AEB56207.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 618

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 84/161 (52%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q S +D L+GL N +A+       I+    Y  +L +   DID+FK+IND +GH  GD+V
Sbjct: 456 QKSLLDPLTGLPNRAAWSERLDLEIARRQRYGGQLLMAVLDIDHFKRINDGYGHLAGDRV 515

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++ +L        F+ R GGEEF     G+       L   LR  +E    +    P
Sbjct: 516 LKIIAGELHKRLRKTDFIARFGGEEFVLLIPGTPLDGGVQLLETLRAAVEACPFHFKGEP 575

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT+SAGIAE  + E       RADQALY AK +GRNRV
Sbjct: 576 -VTITLSAGIAEFRNDEATEDTFERADQALYRAKGAGRNRV 615


>gi|283853734|ref|ZP_06370962.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
 gi|283570884|gb|EFC18916.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
          Length = 398

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 91/182 (50%), Gaps = 14/182 (7%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVF 133
           +L   S  +  EL  + + +  L+  D L+GL N   F+   G   ++       +S+V 
Sbjct: 212 ILAMTSSRVEAELGEARDELRHLAETDGLTGLPNRRHFLRLAGEALDRAREQGFGVSLVM 271

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK +ND  GH  GD+V+  +   L      P  VGRLGGEEF     G S   A 
Sbjct: 272 LDLDNFKTVNDTHGHQTGDRVLMGVGRCLAGALPAPGRVGRLGGEEFGVLLPGVSGPAAV 331

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +A  LR+ +E  + +      + +T S G+AE    + +  ++  AD+ LY AK++GRN
Sbjct: 332 AMAERLRRSLEALRPD-----GLAVTASFGVAE--GDKDVDALLALADECLYAAKRAGRN 384

Query: 254 RV 255
           RV
Sbjct: 385 RV 386


>gi|222147420|ref|YP_002548377.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221734410|gb|ACM35373.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 391

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 101/187 (54%), Gaps = 9/187 (4%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRI----DCLSGLLNHSAFISSLGS--YNEKL 129
           I +++ +  +SG     L +   RI+   R+    D L+GL N  A  ++ G+  ++E +
Sbjct: 189 INMAVCIAGMSGIGALSLTLHQTRITARHRLEAMTDALTGLCNRRALFNAHGTKTFHEDM 248

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++ FDID FK IND +GH VGD+VI  ++ +L    G    V RLGGEEFAA    ++ 
Sbjct: 249 AMLVFDIDRFKAINDRYGHAVGDEVIRNIAAELKAAIGLSS-VTRLGGEEFAAVLENAAP 307

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAK 248
             A  +   +R+ +++ ++ +  G S   T S GIA           I+  AD ALY AK
Sbjct: 308 GRAEWIGERIRRQLQDREV-VVDGDSFVATTSVGIAYGTASGLTFDEILNLADNALYNAK 366

Query: 249 KSGRNRV 255
           + GRNRV
Sbjct: 367 RLGRNRV 373


>gi|327398500|ref|YP_004339369.1| response regulator receiver modulated diguanylate cyclase [Hippea
           maritima DSM 10411]
 gi|327181129|gb|AEA33310.1| response regulator receiver modulated diguanylate cyclase [Hippea
           maritima DSM 10411]
          Length = 429

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 82/143 (57%), Gaps = 3/143 (2%)

Query: 113 LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           L H A +S      E LS +  DID FK +ND +GH  GD+V+  +++ +          
Sbjct: 279 LQHHAQLSKRNG--EALSFLMIDIDKFKTVNDTYGHQSGDEVLKEMANIIKENIRKSDIA 336

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232
            R GGEEF+   +  S Q+A  +A  +R   E + I+I+ G  IHITIS G++    K+ 
Sbjct: 337 CRFGGEEFSVLLINISPQDACSVAEKIRNATEKTAISIN-GQDIHITISIGVSSLTDKDD 395

Query: 233 ISTIIYRADQALYVAKKSGRNRV 255
           I++ I +AD ALY AK++GRNR+
Sbjct: 396 INSFIKKADDALYKAKEAGRNRI 418


>gi|299132554|ref|ZP_07025749.1| diguanylate cyclase [Afipia sp. 1NLS2]
 gi|298592691|gb|EFI52891.1| diguanylate cyclase [Afipia sp. 1NLS2]
          Length = 407

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 114/233 (48%), Gaps = 22/233 (9%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK------- 91
           +AT++F+    +     TP   L        SL + +I      G I  S+ +       
Sbjct: 180 VATILFVLKTTIAVPLTTPAEWLA-----GTSLFVTTIGQCAYFGVIGNSVNRKLHQRTV 234

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +Y +I +L+++D L+G+ N        S  I+ +       S+   D+D+FK+IND
Sbjct: 235 ELKAAYQQIEELAQLDELTGVRNRRNILKCLSEEIARVQRTKASCSLAVIDLDFFKKIND 294

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGHP GD+ +   +  +         +GR GGEEF      +++ EA  + + LR II 
Sbjct: 295 QFGHPAGDEALRTFAIAIFANIRAIDRLGRYGGEEFLLVLPDTAQDEAVRMLDRLRSII- 353

Query: 205 NSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S+++ S+    + +T+SAGI      +    I+ RAD ALY AK +GRN VV
Sbjct: 354 -SEVDWSAISEDLRLTMSAGICSIRPTDSTDEILSRADAALYQAKDAGRNCVV 405


>gi|317052702|ref|YP_004113818.1| diguanylate cyclase [Desulfurispirillum indicum S5]
 gi|316947786|gb|ADU67262.1| diguanylate cyclase [Desulfurispirillum indicum S5]
          Length = 423

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 80/156 (51%), Gaps = 11/156 (7%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G  N   F             Y + L+ V FDID+FKQ+ND  GH VGD V+  L+
Sbjct: 257 DMLTGCYNRRKFEDIFRVETERARRYRQPLAAVLFDIDHFKQVNDTHGHNVGDDVLRTLA 316

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +        ++ R GGEEF   A  ++ ++   LA  +R++IE S+          +T
Sbjct: 317 ALVRGSLRPSDYLVRWGGEEFLVLATETNARQGGHLAQRIRRLIERSEFAAVGT----VT 372

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           IS G+ E    + + T I RAD ALY+AK  GRNRV
Sbjct: 373 ISLGVTEFVSDDELHTFIKRADDALYLAKNKGRNRV 408


>gi|268679838|ref|YP_003304269.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617869|gb|ACZ12234.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 381

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 85/166 (51%), Gaps = 12/166 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
             +  L++ D L+ L N   F++           Y   L     DID+FK+IND  GHPV
Sbjct: 215 EELQHLAQTDILTSLFNRRHFLTLAQQEIIKALRYEHSLCFAVLDIDFFKRINDTLGHPV 274

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V++ L+  L         V R+GGEEFA   L  +E++A      LR+ I    I  
Sbjct: 275 GDIVVSTLARHLKHSIRQSDIVARIGGEEFAFLLLHVNEEQARAKMERLRQEISECIIEY 334

Query: 211 SSGPSIHITISAGIAERCHKEPISTI--IY-RADQALYVAKKSGRN 253
               ++ +T+S G+A    + PI T+  +Y +ADQ LY AKK+GRN
Sbjct: 335 GVDKTLSVTVSIGLA--MLQPPIQTLDELYMKADQKLYEAKKAGRN 378


>gi|325275282|ref|ZP_08141238.1| diguanylate cyclase [Pseudomonas sp. TJI-51]
 gi|324099590|gb|EGB97480.1| diguanylate cyclase [Pseudomonas sp. TJI-51]
          Length = 358

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 110/230 (47%), Gaps = 16/230 (6%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96
           +    V  +A I +  + L P   L    ++  + + +     L LG++   +  +L   
Sbjct: 118 VLKGAVAQLAGILVGTLLLAPGLQLNATALQIYACLPMLTLYPLALGWVCYRLAIQLGDH 177

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHP 149
             R+S LS  D L+GLLNH A+   L    +K         I   DID+FK IND FGH 
Sbjct: 178 KRRLSALSLTDSLTGLLNHGAWKDLLLVKYQKCKQQKAHAVIALIDIDHFKTINDTFGHV 237

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII---ENS 206
           VGD V+  LS +L          GR GG+EF     G+SE +A  +   LR+ +    N+
Sbjct: 238 VGDCVLRQLSAELRRNLRECDQAGRYGGDEFCVILPGTSEAQACQIMERLREQVSGYRNA 297

Query: 207 QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           Q+     P + I++S G++      E     +  AD+ALY AK +GR+RV
Sbjct: 298 QL-----PHLRISLSIGLSPFNASLESPEHWLQEADKALYTAKHAGRDRV 342


>gi|254521278|ref|ZP_05133333.1| diguanylate cyclase [Stenotrophomonas sp. SKA14]
 gi|219718869|gb|EED37394.1| diguanylate cyclase [Stenotrophomonas sp. SKA14]
          Length = 543

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 105/203 (51%), Gaps = 10/203 (4%)

Query: 62  EYILVENLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           E++L   +  + +++T  L++  Y     L  L    + + QL+  D L+GL N  A + 
Sbjct: 330 EWLLEYRVEALQLAVTWLLMMAAYAMNQRLGRLRQQRDELRQLAETDGLTGLPNRRAGLQ 389

Query: 121 SLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L  +          L I F DID FK IND  GH VGD+V+  ++  L     +   V 
Sbjct: 390 QLARHLAQVDRERGPLVIGFLDIDLFKDINDRHGHAVGDQVLVAVARALRAAVRSQDEVV 449

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEP 232
           R+GGEEF     G   + A+   + LR+ I  +   +   P + +T S G+A+ R  ++ 
Sbjct: 450 RMGGEEFLLLMPGMPREAASARLDRLRQRITEAGQALQV-PGLEVTASIGLAQWRPGEDD 508

Query: 233 ISTIIYRADQALYVAKKSGRNRV 255
           ++ ++ RAD A+YVAK++GRNRV
Sbjct: 509 MAGLLRRADHAMYVAKRAGRNRV 531


>gi|94496634|ref|ZP_01303210.1| diguanylate cyclase [Sphingomonas sp. SKA58]
 gi|94423994|gb|EAT09019.1| diguanylate cyclase [Sphingomonas sp. SKA58]
          Length = 389

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 117/258 (45%), Gaps = 18/258 (6%)

Query: 16  EKNLESFSP--HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI 73
           E+NL+ F+   H        + +        +A++      L    GL   +VE      
Sbjct: 139 EENLDQFTGLMHESRKSAKDYGAALQEQAKDLADVAEGEPVLARLVGLTRSMVEKTR--- 195

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYN 126
            ++   L         LK    +  R ++    D L+GL N  AF       ++   + +
Sbjct: 196 -AVETQLRENQKQTQALKSSLETARRAAEQ---DHLTGLPNRRAFEARLRDEVAEAQAAD 251

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           E LSI F DID+FK IND  GH  GD+V+ F++  L  V      V R GGEEF     G
Sbjct: 252 ESLSIAFCDIDHFKVINDTHGHDTGDRVLKFVAGLLAKVSDDRCHVARHGGEEFVMLFRG 311

Query: 187 SSEQEAAILANDLRK-IIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQAL 244
            +  E     +D+R+ +   S +N ++G  +  ++ SAG+A     +     +  AD+AL
Sbjct: 312 KTAAETCEAVDDVREDLASRSLVNRTNGERMDRVSFSAGVANVLAYDDPRAALKAADRAL 371

Query: 245 YVAKKSGRNRVVCFSDIE 262
           Y+AK+ GRNRV   ++ E
Sbjct: 372 YLAKEHGRNRVYLAAETE 389


>gi|83310444|ref|YP_420708.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945285|dbj|BAE50149.1| Response regulator [Magnetospirillum magneticum AMB-1]
          Length = 498

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 93/186 (50%), Gaps = 14/186 (7%)

Query: 90  LKELFISYNRISQLSR---IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
           L+    +  +  +L R    D L+G+ N    +S           Y   L++   DID+F
Sbjct: 314 LRSYLTTVRQREELRRQADTDPLTGVPNRRHLMSVAEHELARTLRYGGALALFMVDIDHF 373

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND +GHP GD+VI  L+  +          GRLGGEEFAA    +  + AAI+A  L
Sbjct: 374 KAINDTWGHPTGDRVIQVLAAAMAASAREQDTAGRLGGEEFAAVLPETDLEGAAIMAERL 433

Query: 200 RKIIE--NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R+ +E   S ++   G  +  T+S G+A  +     +  I+ RAD+ALY AK  GRNRV 
Sbjct: 434 REAVEAITSALD-DQGQPVRFTVSIGVAAIQLGDGSVEDILGRADRALYAAKHGGRNRVE 492

Query: 257 CFSDIE 262
             +  E
Sbjct: 493 MAATAE 498


>gi|118581762|ref|YP_903012.1| diguanylate cyclase [Pelobacter propionicus DSM 2379]
 gi|118504472|gb|ABL00955.1| diguanylate cyclase [Pelobacter propionicus DSM 2379]
          Length = 380

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 83/168 (49%), Gaps = 10/168 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I   +RID L+G+ N   F  +          +   +S    DID+FKQIND +GHP GD
Sbjct: 206 IEHTARIDTLTGIANRFHFSEAAPVLLELCRRHEHPISAFMVDIDHFKQINDRYGHPEGD 265

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +VI  ++D +         + R GGEEF      +    A  +A  +R+ I    + + +
Sbjct: 266 EVIRLVADSMRTKLRNTDLLARYGGEEFVVILPETPPHAAVGVAESVRRTIAEKALALGA 325

Query: 213 GPSIHITISAGIAER---CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           G SI ITIS G+A          +  ++ +AD  LY AK+ GRNRVV 
Sbjct: 326 GRSIRITISIGVAGYDLLPDDIGLEELLKQADTRLYEAKEGGRNRVVA 373


>gi|89092689|ref|ZP_01165642.1| methyl-accepting chemotaxis protein-like [Oceanospirillum sp.
           MED92]
 gi|89083201|gb|EAR62420.1| methyl-accepting chemotaxis protein-like [Oceanospirillum sp.
           MED92]
          Length = 385

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 103/189 (54%), Gaps = 7/189 (3%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI 131
           V+I   IS+++   S S ++ + I  + ++QL     L+   +      +   +N  L I
Sbjct: 201 VLIMTIISVVMAKRSTSTIRNMAIR-DPLTQLYTRRYLNESEDSFVREDNRNQFNH-LYI 258

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           VF DID+FKQ+ND +GH VGD+V++ + + L           R GGEEF    L +S++ 
Sbjct: 259 VFLDIDFFKQVNDTYGHMVGDQVLSKVGEVLRTHTRAQDLCVRYGGEEFVVMTLANSDEP 318

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              L   LRK     ++  + G    IT+SAGIA R   E  + ++ RADQ LY AK++G
Sbjct: 319 VLKLTERLRK--HTHELTFAEGQ--QITLSAGIARREVDESFAHVLQRADQNLYEAKQTG 374

Query: 252 RNRVVCFSD 260
           R+R++ F+D
Sbjct: 375 RDRII-FND 382


>gi|312142594|ref|YP_003994040.1| diguanylate cyclase [Halanaerobium sp. 'sapolanicus']
 gi|311903245|gb|ADQ13686.1| diguanylate cyclase [Halanaerobium sp. 'sapolanicus']
          Length = 316

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 92/167 (55%), Gaps = 16/167 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I +L + D L+GL N   F       I++   ++  LS+V  D+D+FK+INDN+GH  G
Sbjct: 153 KIEELLKTDKLTGLSNRRHFMEYFEKMIANAKRHSLSLSLVMCDLDHFKKINDNYGHGAG 212

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN---SQI 208
           D+V+  + + L+          R+GGEEF     G+S +E    A  +RK + N   ++I
Sbjct: 213 DRVLEEVGELLLNETRQGDLASRIGGEEFTIILNGTSLKEGKNYAERIRKKVSNLEFAEI 272

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           N        +TIS GI E   ++   + + RAD+ALY AK +GRNRV
Sbjct: 273 NKK------VTISMGITEIQAEDNAESFLKRADRALYKAKNNGRNRV 313


>gi|168186514|ref|ZP_02621149.1| putative ggdef domain protein [Clostridium botulinum C str. Eklund]
 gi|169295530|gb|EDS77663.1| putative ggdef domain protein [Clostridium botulinum C str. Eklund]
          Length = 1801

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/130 (43%), Positives = 76/130 (58%), Gaps = 4/130 (3%)

Query: 126  NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            N+K SI+ FD+D FK +ND FGH VGDKV+  + + ++         GR GGEEF A   
Sbjct: 1494 NDKFSIIMFDLDNFKNVNDTFGHQVGDKVLNNVCNIVMKNLREGDICGRYGGEEFIAILP 1553

Query: 186  GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQAL 244
               E EA  +A  +R  +ENS+I     P   +TIS GI+    +  +   +I +ADQAL
Sbjct: 1554 RIGENEALNIAERIRVAVENSEILGEKNP---VTISIGISTYPKQAQLKRELIEKADQAL 1610

Query: 245  YVAKKSGRNR 254
            Y+AK SGRNR
Sbjct: 1611 YMAKDSGRNR 1620


>gi|127513951|ref|YP_001095148.1| diguanylate cyclase [Shewanella loihica PV-4]
 gi|126639246|gb|ABO24889.1| diguanylate cyclase [Shewanella loihica PV-4]
          Length = 362

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 97/198 (48%), Gaps = 15/198 (7%)

Query: 70  SLVIISITISLLLGYISG---SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY- 125
           +++ +SI   LL  +  G   S  ++L     +I +L+  D L+GL N      +L  Y 
Sbjct: 158 NVIEVSIAHILLFRFYEGTRSSAYRQLGERNAKIQKLAETDKLTGLYNREKLDITLEEYV 217

Query: 126 ------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                     S++  D+DYFKQIND  GH  GD+V+  L+D L  +     F+ R GGEE
Sbjct: 218 LQSRHRQTPFSLLILDVDYFKQINDAHGHLTGDRVLVQLADSLRSLCREGDFLARWGGEE 277

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F      +       +A  LR+ I   + +  S     +TIS G A+    +   T++ R
Sbjct: 278 FVILLPETQLSICVAVAEQLRQDIAAQKFDGQS-----LTISLGAAQLREDDTTKTLVNR 332

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK +GRNRVV 
Sbjct: 333 ADNALYQAKHTGRNRVVA 350


>gi|167628686|ref|YP_001679185.1| two component diguanylate cyclase [Heliobacterium modesticaldum
           Ice1]
 gi|167591426|gb|ABZ83174.1| two component diguanylate cyclase [Heliobacterium modesticaldum
           Ice1]
          Length = 324

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/186 (35%), Positives = 98/186 (52%), Gaps = 16/186 (8%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
           +  EL  +  ++  LS +D L+GL N   F   L S  ++       +S++ FDID+FK 
Sbjct: 138 VTAELEEAVRKLQNLSSLDGLTGLANRRRFDEYLASEWKRAIRNGTPISLILFDIDWFKP 197

Query: 142 INDNFGHPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
            ND +GH  GD   K IA L  +  VV  +   V R GGEEFA     +S++ A  +A  
Sbjct: 198 YNDTYGHIQGDDCLKAIASLMPK--VVRRSSDLVCRYGGEEFAVILPDTSQEGALAVAES 255

Query: 199 LRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +R+ +  + I     P   +T+S G+A        EP++ I Y AD+ALY AK+ GRNR 
Sbjct: 256 IREALSEAGIEHRQSPLDRVTVSVGVATAYPSPSSEPVTLIGY-ADEALYEAKRQGRNRT 314

Query: 256 VCFSDI 261
           V  ++I
Sbjct: 315 VENAEI 320


>gi|320324986|gb|EFW81058.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329140|gb|EFW85138.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 796

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/186 (35%), Positives = 95/186 (51%), Gaps = 18/186 (9%)

Query: 85  ISGSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129
           + GS+L   F+S      R+ Q    LS  D L+G  N   F       +  +  +   L
Sbjct: 609 VDGSVLWHGFVSDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNL 668

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           SI+  DID+FK+IND FGH  GD+V+  +S+++     +     RLGGEEF     G+  
Sbjct: 669 SIIMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRG 728

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            +A  LA  LR+ + N  I    G    +T S GIA     E I T++ RAD  +Y AK+
Sbjct: 729 SQAYQLALSLREGLRNQVIE---GVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQ 785

Query: 250 SGRNRV 255
           +GR+RV
Sbjct: 786 AGRDRV 791


>gi|298486599|ref|ZP_07004657.1| predicted CHASE domain/sensory box-containing nucleotide cyclase
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298158814|gb|EFH99876.1| predicted CHASE domain/sensory box-containing nucleotide cyclase
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 796

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/186 (35%), Positives = 95/186 (51%), Gaps = 18/186 (9%)

Query: 85  ISGSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129
           + GS+L   F+S      R+ Q    LS  D L+G  N   F       +  +  +   L
Sbjct: 609 VDGSVLWHGFVSDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNL 668

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           SI+  DID+FK+IND FGH  GD+V+  +S+++     +     RLGGEEF     G+  
Sbjct: 669 SIIMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRG 728

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            +A  LA  LR+ + N  I    G    +T S GIA     E I T++ RAD  +Y AK+
Sbjct: 729 SQAYQLALSLREGLRNQVIE---GVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQ 785

Query: 250 SGRNRV 255
           +GR+RV
Sbjct: 786 AGRDRV 791


>gi|239908299|ref|YP_002955040.1| putative signaling protein [Desulfovibrio magneticus RS-1]
 gi|239798165|dbj|BAH77154.1| putative signaling protein [Desulfovibrio magneticus RS-1]
          Length = 853

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 11/163 (6%)

Query: 103 LSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+G+ N         A +SS   YN + S+  FDID FK +ND +GH  GD V+
Sbjct: 668 LATKDGLTGVSNRHHFMEISGALLSSATRYNTEFSVAIFDIDNFKTVNDTWGHSAGDMVL 727

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +       F +   +GRLGGEEFA +   +S + AA      R I+E++       P 
Sbjct: 728 KKICTLATTEFRSSDIIGRLGGEEFAISMPETSLENAAAAVERFRTIVESTIFEYDEIP- 786

Query: 216 IHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256
           I+ITIS+G+A  C  H + I +++  AD  LY AK+ GRN+ V
Sbjct: 787 INITISSGVAA-CSKHIKTIDSLLKSADNFLYKAKRHGRNQTV 828


>gi|157369424|ref|YP_001477413.1| diguanylate cyclase [Serratia proteamaculans 568]
 gi|157321188|gb|ABV40285.1| diguanylate cyclase [Serratia proteamaculans 568]
          Length = 482

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 9/177 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+   +  D L+G+L  +A     G          E +S++  DID+FKQIND  GH VG
Sbjct: 300 RLEHSANHDFLTGVLARNALTRKAGELLEHKHKSKEAVSLLLIDIDHFKQINDTHGHLVG 359

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+A  +  +          GRLGGEEFA     +   +   LA  LR++++ + +  +
Sbjct: 360 DQVLASFAHIVRRELRHDQLFGRLGGEEFAIMLPRALAAQGVALAEHLRQLVQKADLLPT 419

Query: 212 SGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
               ++ITIS G+A     E   +  ++  AD ALY AK  GRNRV  F+ +  N+ 
Sbjct: 420 GKVPLNITISVGVASLGMNEVKSLEQLMNMADIALYRAKSQGRNRVESFNAVSGNSV 476


>gi|304391262|ref|ZP_07373206.1| diguanylate cyclase [Ahrensia sp. R2A130]
 gi|303296618|gb|EFL90974.1| diguanylate cyclase [Ahrensia sp. R2A130]
          Length = 398

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 87/163 (53%), Gaps = 8/163 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFGHPVGDKV 154
           +R    S ID L+GL N   F         K   V+    D+D+FK++ND  GHPVGD V
Sbjct: 216 DRARMASFIDPLTGLYNRRGFEELSAKIEAKPGTVWIAIGDLDHFKRLNDRHGHPVGDAV 275

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-NSQIN-ISS 212
           +  ++D L     +   V R GGEEF  A +G+SE EA    N LR+ +     +N +S 
Sbjct: 276 LKGVADILSDGTRSNDLVCRFGGEEFLVALVGTSEAEAVNAMNRLREAVSFQGHVNDLSP 335

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G    ++++ G+A     EP+  +  RAD+ALY  K +GRNRV
Sbjct: 336 G---EVSMTFGLACWMPGEPVLEVYRRADRALYSGKNNGRNRV 375


>gi|257486238|ref|ZP_05640279.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 796

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/186 (35%), Positives = 95/186 (51%), Gaps = 18/186 (9%)

Query: 85  ISGSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129
           + GS+L   F+S      R+ Q    LS  D L+G  N   F       +  +  +   L
Sbjct: 609 VDGSVLWHGFVSDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNL 668

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           SI+  DID+FK+IND FGH  GD+V+  +S+++     +     RLGGEEF     G+  
Sbjct: 669 SIIMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRG 728

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            +A  LA  LR+ + N  I    G    +T S GIA     E I T++ RAD  +Y AK+
Sbjct: 729 SQAYQLALSLREGLRNQVIE---GVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQ 785

Query: 250 SGRNRV 255
           +GR+RV
Sbjct: 786 AGRDRV 791


>gi|330988388|gb|EGH86491.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 796

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/186 (35%), Positives = 95/186 (51%), Gaps = 18/186 (9%)

Query: 85  ISGSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129
           + GS+L   F+S      R+ Q    LS  D L+G  N   F       +  +  +   L
Sbjct: 609 VDGSVLWHGFVSDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNL 668

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           SI+  DID+FK+IND FGH  GD+V+  +S+++     +     RLGGEEF     G+  
Sbjct: 669 SIIMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRG 728

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            +A  LA  LR+ + N  I    G    +T S GIA     E I T++ RAD  +Y AK+
Sbjct: 729 SQAYQLALSLREGLRNQVIE---GVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQ 785

Query: 250 SGRNRV 255
           +GR+RV
Sbjct: 786 AGRDRV 791


>gi|308050982|ref|YP_003914548.1| diguanylate cyclase with PAS/PAC sensor [Ferrimonas balearica DSM
           9799]
 gi|307633172|gb|ADN77474.1| diguanylate cyclase with PAS/PAC sensor [Ferrimonas balearica DSM
           9799]
          Length = 314

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 109/215 (50%), Gaps = 18/215 (8%)

Query: 57  PFYGLEYILVENLSLVIIS-----ITISLLLGY---ISGSILKELFISYNRISQLSRIDC 108
           P  G   ++ +N+++  +      ++ + L+ Y   +  +  ++L  +  ++ +LS+ID 
Sbjct: 99  PITGGNQMMCQNMTVQPLQDLRGEVSHAALILYDVSVQAADRRQLTDANEKLERLSQIDP 158

Query: 109 LSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GL N   +  +L         Y     ++  D+D+FKQ+ND  GH VGD+V+  L + 
Sbjct: 159 LTGLANRRQWEQALEQEFQRCRRYQPPSCLLVVDVDHFKQVNDQHGHAVGDQVLNELGNL 218

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L         V R GGEEF      +  ++  ILA  LR+ +E   + +    S++IT+S
Sbjct: 219 LARSLRKTDLVARYGGEEFVILLTETRPEQGRILAERLREAVEEMVMKVPQ--SLNITVS 276

Query: 222 AGIAERCHKEPISTIIY-RADQALYVAKKSGRNRV 255
            G+    H    +   +  AD+ALY AK++GRNRV
Sbjct: 277 LGLCPYQHSLASAQAWFEEADRALYQAKQNGRNRV 311


>gi|170734764|ref|YP_001773878.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3]
 gi|169820802|gb|ACA95383.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3]
          Length = 502

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 11/179 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQ 141
           L++ F     ++ L+R D L+GL N  A  ++L    E+L        S++F D D+FKQ
Sbjct: 318 LRDNFRKQTLLTDLTRTDPLTGLRNRRALDTALADEWERLQRGSGGSLSVLFIDADHFKQ 377

Query: 142 INDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND  GH  GD  + FL++ +            R GGEEF A    + E  AA +A  +R
Sbjct: 378 YNDQHGHAQGDTALRFLAECIRAHTRRRGDLAARYGGEEFVAVLPDTDENGAAQVAEAIR 437

Query: 201 KIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +E +++     + P   ++I      R     +  + ++AD ALY AK+ GRNRV C
Sbjct: 438 REVEGNRLVGFAETVPPFTVSIGCATGRRARHASMFALSHQADMALYRAKREGRNRVCC 496


>gi|152992796|ref|YP_001358517.1| signal transduction response regulator [Sulfurovum sp. NBC37-1]
 gi|151424657|dbj|BAF72160.1| signal transduction response regulator [Sulfurovum sp. NBC37-1]
          Length = 409

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 91/175 (52%), Gaps = 9/175 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNE-KLSIVFFDIDYFKQIN 143
           KEL  +  ++ +L+  D L+ L N   F S       L   N+ +++I+  DID FK+IN
Sbjct: 232 KELNKTNEKLKKLASTDPLTELFNRRHFESLTEPFLELAKRNDTEIAIIVIDIDNFKKIN 291

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGD VI  L+  L         V R GGEEF      ++ +    +A  +RK +
Sbjct: 292 DTYGHKVGDDVIVDLATILKRGSRQSDIVCRWGGEEFIILLANTNGKSVLTIAEKIRKKV 351

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           EN    +  G  +  TIS G+A   +     I  +I RAD+ALY AK SG+N+VV
Sbjct: 352 ENLVRTLEDGNELKFTISCGVALVNKESNTSIHNVIDRADRALYKAKNSGKNKVV 406


>gi|307721992|ref|YP_003893132.1| diguanylate cyclase with hemerythrin-like metal-binding
           domain-containing protein [Sulfurimonas autotrophica DSM
           16294]
 gi|306980085|gb|ADN10120.1| diguanylate cyclase with hemerythrin-like metal-binding domain
           protein [Sulfurimonas autotrophica DSM 16294]
          Length = 725

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 9/164 (5%)

Query: 99  RISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ +++ ID L+G +N           +     Y   LS +  DID+FKQ+ND +GH VG
Sbjct: 555 QLEEMAFIDPLTGAVNRRKGEELFALELERATRYKRDLSFLMLDIDHFKQVNDTYGHAVG 614

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+   S   + +      V R+GGEEFA     ++ + A   A   R+ I NS + I 
Sbjct: 615 DEVLKHFSSICLKMARHLDVVARIGGEEFAVMLPETNSEGAYEFAERFREKICNSSVIID 674

Query: 212 SGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
           +  +I  ++S GI+  +  + + + TI+ RAD+ALY AKKSGRN
Sbjct: 675 NTTTIKYSVSIGISSLDITYDKDVKTILERADKALYQAKKSGRN 718


>gi|299768382|ref|YP_003730408.1| GGDEF domain-containing protein [Acinetobacter sp. DR1]
 gi|298698470|gb|ADI89035.1| GGDEF domain-containing protein [Acinetobacter sp. DR1]
          Length = 360

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 135/282 (47%), Gaps = 26/282 (9%)

Query: 7   DFLSIWLCHEKNL-ESFSPHTFMIYFS-------------IFFSIFIATVIFIANIFLFY 52
            F ++ LCH+  L  S SP T + Y               ++ ++  AT+I     +L  
Sbjct: 74  QFFTLMLCHDGYLIGSISPATMVGYVGTIGVGLVLFDRKIVYSALVPATIILTVCTYLSM 133

Query: 53  IGLTPFYGLEYILV----ENLSLVIISITISLLLGYISGSILKELFISYNR-----ISQL 103
            G+ P+  L  ++     +     + S+   ++   ++  IL E+ ++  R     I +L
Sbjct: 134 KGVLPYAPLFNLIAMQRAQTNPFWLGSMAFFIMPILLACFILFEILLTQWRQRETYIQRL 193

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           S++D L+ +LN  +  + L S +++    ++V  DID+FK+IND +GH  GD+V+  ++ 
Sbjct: 194 SQLDPLTNVLNRRSLNTHLESLHQQQFDYAVVLLDIDHFKKINDIYGHHQGDQVLIEIAQ 253

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            L     +   +GR GGEEF      +   +A  +A   R  ++   +  +    IHI+ 
Sbjct: 254 CLSENLRSEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRCALQELPVCSAQNSPIHISA 313

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           S GI+     +    +I +ADQALY  K SGRN+V  F   E
Sbjct: 314 SFGISSSAFAQDPYLVIRQADQALYAVKASGRNQVRTFHQTE 355


>gi|209967121|ref|YP_002300036.1| diguanylate cyclase, putative [Rhodospirillum centenum SW]
 gi|209960587|gb|ACJ01224.1| diguanylate cyclase, putative [Rhodospirillum centenum SW]
          Length = 1037

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 9/178 (5%)

Query: 91   KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
            +EL ++  R+ QL+  D L+G+LNH AF ++L +       Y    S++  D+D+FK++N
Sbjct: 850  RELELANRRLEQLANTDPLTGILNHRAFWAALEAEWDRACRYGRVFSVLQIDMDHFKRVN 909

Query: 144  DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            D +GH  GD V+  L+D++  +  +    GRLGGEEFA     +  + A  +A  +   I
Sbjct: 910  DTYGHAAGDAVLQTLTDRVGRLLRSVDRFGRLGGEEFAVLLPDTGYEGAVQVAERILDAI 969

Query: 204  ENSQINISSGPSIHITIS-AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                + +  G +I I+ S  G + R     ++ I++RAD ALY AK  GR++     D
Sbjct: 970  RTEPV-LFEGTAIPISASIGGSSLRPDDANVNVILHRADAALYAAKGRGRSQAAFAED 1026


>gi|126664441|ref|ZP_01735425.1| Putative diguanylate cyclase (GGDEF domain) [Marinobacter sp.
           ELB17]
 gi|126630767|gb|EBA01381.1| Putative diguanylate cyclase (GGDEF domain) [Marinobacter sp.
           ELB17]
          Length = 588

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 104/211 (49%), Gaps = 16/211 (7%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           G+ P+  L Y  V+ + +++ +I + L L      ++++   +     Q ++ D L+GL 
Sbjct: 368 GMIPYTQLGYYAVD-IGMIVDAILLMLALA----DLVRKNEEARTAAEQNAQTDLLTGLS 422

Query: 114 NHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N   F+       S +   N  + +   DID FK IND +GH VGDKV+  ++D+L    
Sbjct: 423 NRRGFLPVAESLWSLVTRKNRNVCVAMIDIDRFKNINDQYGHAVGDKVLKVIADELYRSR 482

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                + R GGEEF      +SE EA  +A   R  IE    N   G  I  TIS G+  
Sbjct: 483 RRGDLLARWGGEEFTLLLPETSEAEALKVAERFRHNIEQLVTN-DRGRVIQCTISIGVTS 541

Query: 227 RCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
           R H E ++    I RAD+ LY AK  GRN+V
Sbjct: 542 R-HSEHVTLDQAIARADEELYRAKLQGRNQV 571


>gi|288961296|ref|YP_003451635.1| diguanylate cyclase [Azospirillum sp. B510]
 gi|288913604|dbj|BAI75091.1| diguanylate cyclase [Azospirillum sp. B510]
          Length = 627

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 8/172 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           ++E  +   R+ QL+ +D L+GLLN  AF+    +  E+       +S++  D D+FK I
Sbjct: 452 IRERKLQEERLWQLATLDPLTGLLNRRAFMERGAALLEEGWRQGRPVSVLMIDADHFKSI 511

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH  GD V+  L+  L         +GRLGGEEFA    G+   +A  +A  L   
Sbjct: 512 NDGFGHQTGDVVLRMLAGILAAAVRGDDLLGRLGGEEFAVILPGADGPDADGIAERLLAD 571

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +  +++  + G  + ITIS GI+    +  +  ++  AD+ALY AK  GR+R
Sbjct: 572 VRQARVP-APGRILTITISIGISVAQRRCALEDLLAAADRALYEAKTMGRDR 622


>gi|330950877|gb|EGH51137.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 417

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 90/167 (53%), Gaps = 11/167 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +++  D L+GL N  +        I ++    +  S++  DID+FK +ND +GHP 
Sbjct: 254 QKLLEIAHSDPLTGLDNRRSAEHTLERQIPAVSMSGKPFSLIICDIDHFKAVNDRYGHPA 313

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VI  ++  L           R GGEEF      SS ++AA LA  +RK +E+  I  
Sbjct: 314 GDSVITSVAAILKQRIRLLDVAARWGGEEFLILVPDSSLKQAAELAERIRKSVESLVIPE 373

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +      +TIS G+AE    E  +++I RADQALY AK+ GRNRV C
Sbjct: 374 TGS----VTISLGVAELSAGETAASLIQRADQALYQAKRLGRNRVEC 416


>gi|299135153|ref|ZP_07028344.1| response regulator receiver modulated diguanylate cyclase [Afipia
           sp. 1NLS2]
 gi|298590130|gb|EFI50334.1| response regulator receiver modulated diguanylate cyclase [Afipia
           sp. 1NLS2]
          Length = 458

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 86/164 (52%), Gaps = 9/164 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N       +G+  E+       L+++  DID+FK IND +GH  GD V
Sbjct: 290 EMAITDPLTGLHNRRYLEGHVGTLAEQAAARGKPLALMILDIDFFKSINDTYGHDAGDDV 349

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG- 213
           +   + ++           R GGEEF      +    A I+A  LR+ I N   +I  G 
Sbjct: 350 LREFATRIRKSIRGIDLAARYGGEEFVIVMPETDLHVAGIIAERLRRSIANEPFSIEKGT 409

Query: 214 PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             I +TIS GI+    K EP++ ++ RADQALY AK  GRNRVV
Sbjct: 410 KRIEVTISVGISMLEKKSEPVADVLKRADQALYRAKHDGRNRVV 453


>gi|71736497|ref|YP_274299.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71557050|gb|AAZ36261.1| CHASE domain/sensory box-containing nucleotide cyclase, putative
           [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 796

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/186 (35%), Positives = 95/186 (51%), Gaps = 18/186 (9%)

Query: 85  ISGSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129
           + GS+L   F+S      R+ Q    LS  D L+G  N   F       +  +  +   L
Sbjct: 609 VDGSVLWHGFVSDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNL 668

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           SI+  DID+FK+IND FGH  GD+V+  +S+++     +     RLGGEEF     G+  
Sbjct: 669 SIIMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRG 728

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            +A  LA  LR+ + N  I    G    +T S GIA     E I T++ RAD  +Y AK+
Sbjct: 729 SQAYQLALSLREGLRNQVIE---GVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQ 785

Query: 250 SGRNRV 255
           +GR+RV
Sbjct: 786 AGRDRV 791


>gi|311693741|gb|ADP96614.1| GGDEF domain protein [marine bacterium HP15]
          Length = 346

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 102/215 (47%), Gaps = 31/215 (14%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN-- 114
           P   L  + + NLS+V        +  Y++   L  +  +  ++ +++  D L+GL N  
Sbjct: 142 PQTALNIVHLFNLSVVFA------MFSYLASYYLSMVVSAQRKLREMATTDSLTGLFNRR 195

Query: 115 HSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
           H  +     +S        +  +  D+D+FK IND FGH  GD+V+  ++D +       
Sbjct: 196 HMTYLAEKEVSRFRRSGHPVGFLLLDVDHFKSINDAFGHEAGDRVLGCVADVIREELRAQ 255

Query: 170 MFVGRLGGEEF--------AAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITI 220
             +GR GGEEF        A  A  S+E+   A LA D R +I         G  I +TI
Sbjct: 256 DLIGRWGGEEFLVILPDTNADKAQASAERIRKAFLARDWRAVI---------GGDIDVTI 306

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S G++E    E +S  + RAD+ALY  K  GRNRV
Sbjct: 307 SIGVSELRTGEDLSAAVSRADEALYRGKTGGRNRV 341


>gi|116252452|ref|YP_768290.1| GGDEF sensory box protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257100|emb|CAK08194.1| putative GGDEF sensory box protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 355

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/184 (34%), Positives = 95/184 (51%), Gaps = 18/184 (9%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQ 141
            + KEL   Y RI+     D L+ L N  AF   L       S     +++  DID FK+
Sbjct: 164 QVRKELD-EYKRIAN---TDSLTRLSNRRAFDDRLAAIFDNSSMRPVTALLLCDIDNFKK 219

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GHPVGDKV+A ++  +       +FV R GGEEFA    G++ +E   +A  +R+
Sbjct: 220 INDTYGHPVGDKVLATVASVIRSNVRRDIFVARTGGEEFALIIDGNTPEEVTGIAERIRR 279

Query: 202 IIE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +E     NS+  ++ GP   +T+S GI    + E    +  + D ALY AK +GRN  +
Sbjct: 280 TLETTPFKNSRTRVNYGP---VTVSIGICMASNAEDAGELYSKTDIALYGAKNAGRNCTI 336

Query: 257 CFSD 260
            + D
Sbjct: 337 LYQD 340


>gi|238758044|ref|ZP_04619225.1| Diguanylate cyclase [Yersinia aldovae ATCC 35236]
 gi|238703798|gb|EEP96334.1| Diguanylate cyclase [Yersinia aldovae ATCC 35236]
          Length = 209

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 96/185 (51%), Gaps = 14/185 (7%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIV 132
           LLG ++    K L  S   + ++S  D L+GL N        H+ F  S   Y    +++
Sbjct: 25  LLGLVTYRTAKRLAESKEELLRISVRDGLTGLYNRRHWEHQLHNQF-DSCRRYQHGATLI 83

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQE 191
             DID FK IND FGH VGD+ I  L+++L++       VGR GG+EF A    ++ EQ 
Sbjct: 84  LLDIDNFKSINDTFGHAVGDEAITILAEELLLGLRAIDIVGRYGGDEFGAILPNTTAEQT 143

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250
             +LA   R  I   +I     PS+ + +SAGIA+  H        +  AD ALY+AK +
Sbjct: 144 REVLA---RIQIRLGEIIFKHAPSLQLRLSAGIADYRHDMVNYQQWLKAADAALYLAKDN 200

Query: 251 GRNRV 255
           GRNR+
Sbjct: 201 GRNRI 205


>gi|170768256|ref|ZP_02902709.1| diguanylate cyclase (GGDEF) domain protein [Escherichia albertii
           TW07627]
 gi|170123022|gb|EDS91953.1| diguanylate cyclase (GGDEF) domain protein [Escherichia albertii
           TW07627]
          Length = 472

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 88/166 (53%), Gaps = 10/166 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS----YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            ++S  +  D L+ + + S    +L +      + L+++  DIDYFK INDN+GH  GDK
Sbjct: 297 KQVSLRADFDFLTQVYSRSGLYEALKNPSLQQTQHLTVMLLDIDYFKNINDNYGHECGDK 356

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V++  +  +  + G    V R+GGEEFA A    +  +  ++A  +RK +E    N    
Sbjct: 357 VLSVFAQHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFNWQQ- 415

Query: 214 PSIHITISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254
            ++++T+S G+   C       +  + ++  AD+ LY +KK GRNR
Sbjct: 416 KTLYLTVSIGVGSGCASFLTLTDDFNKLMVEADECLYRSKKDGRNR 461


>gi|315125736|ref|YP_004067739.1| diguanylate cyclase [Pseudoalteromonas sp. SM9913]
 gi|315014250|gb|ADT67588.1| diguanylate cyclase [Pseudoalteromonas sp. SM9913]
          Length = 426

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 94/173 (54%), Gaps = 9/173 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKL--SIVFFDIDYFKQIN 143
           K+L +   ++  L+  D L+G LN  +F  +       S  +KL  S +  D+DYFK IN
Sbjct: 253 KDLQVLNEKLKTLATRDSLTGTLNRGSFFDTANHLLELSQRQKLPASFILIDLDYFKNIN 312

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGDKV+   +D +  +      +GR+GGEEFA     +    +  LAN +RK +
Sbjct: 313 DTYGHFVGDKVLIHFTDTVQSMIRESDLIGRVGGEEFALFLPNTGLDNSFKLANKIRKAV 372

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV 255
            +S + +  G ++  T+S G+A    K+   T +++ AD  LY AK  GR+RV
Sbjct: 373 VDSTLEV-DGETVIYTVSIGVASSELKDCSVTELFKVADLKLYCAKDKGRDRV 424


>gi|304407393|ref|ZP_07389046.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus
           curdlanolyticus YK9]
 gi|304343834|gb|EFM09675.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus
           curdlanolyticus YK9]
          Length = 327

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 12/177 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           +EL    +++  L+  D L+GL N   F   L              S++  DID+FK IN
Sbjct: 152 QELLRLNHQLEALASTDPLTGLRNRRFFQEQLLANIALFQRMRLPFSLLIVDIDHFKAIN 211

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGHPVGD V+  L   L  +      V R GGEEF   A  S+   A + A   R   
Sbjct: 212 DTFGHPVGDAVLTDLGQMLRSMSRESDIVARYGGEEFVIIAPSSTRDNAKLAAERFR--- 268

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +QI  ++     +T+S G+A     +   T++ +ADQALY +K +GRNRV   +D
Sbjct: 269 --AQIEAATLGGCQVTVSIGVATMTSVDTDVTLLQKADQALYASKSNGRNRVTHAAD 323


>gi|294653544|ref|NP_714781.2| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
 gi|293630744|gb|AAN51796.2| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
          Length = 172

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 91/169 (53%), Gaps = 12/169 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           N++S+L   + L+G+ N   F       I+    +  + +I+  DID+FKQ+ND FGH  
Sbjct: 2   NQVSKLIHTNPLTGIWNRRGFLKLTQRSIALENRHKNEWAILMIDIDHFKQVNDRFGHDA 61

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDK +  ++  L         V R GGEEFA    G  ++ +  +A +LRK +EN QI +
Sbjct: 62  GDKTLIRVAQILSRSIRQTDVVCRWGGEEFAIFLCGVGQEISINIAEELRKEVEN-QIRL 120

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             G    +T+S G++    K+ +      ADQALY AK SGRNRV  F+
Sbjct: 121 KDGNP--VTLSIGVS--GGKQNLEEAFTNADQALYQAKTSGRNRVCAFN 165


>gi|39934859|ref|NP_947135.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009]
 gi|39648709|emb|CAE27231.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris
           CGA009]
          Length = 272

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 111/205 (54%), Gaps = 16/205 (7%)

Query: 61  LEYILVENLSLVI---ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           +E   V   SLV+   +S T+S  + Y S  ++++L  +   + ++SR D L+GLLN   
Sbjct: 46  VEVGAVVKASLVVALSVSTTLSGAMAYRSARLMRQLTSTRAELMRMSRTDPLTGLLNRRG 105

Query: 118 F----ISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
           F     + L   N   + +  +  D+D FK IND++GH +GD+V+A + D ++  F  P 
Sbjct: 106 FDEAAATQLAQANFAGQPVVAMMCDLDRFKAINDHYGHNIGDRVLAEIGD-ILRDFAAPR 164

Query: 170 -MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
            M + R GGEEFA   +G S+++A   A +L ++   +      G  + +T+S G+A   
Sbjct: 165 GMLIARHGGEEFAGLMVGVSDEQANDYALELCRLCATAV--ACDGRLVAVTMSFGLAAYR 222

Query: 229 HKEPISTIIYRADQALYVAKKSGRN 253
             E +S ++ RAD ALY AK  GR 
Sbjct: 223 GGE-LSALMRRADLALYRAKDLGRT 246


>gi|317046808|ref|YP_004114456.1| diguanylate cyclase [Pantoea sp. At-9b]
 gi|316948425|gb|ADU67900.1| diguanylate cyclase [Pantoea sp. At-9b]
          Length = 364

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 122/248 (49%), Gaps = 21/248 (8%)

Query: 34  FFSIFIATVIFIANIFL-FYIGLTPFYGLEYILVENLSLVIISITISL-LLGYISGSILK 91
             S+F  + I +++  + F + +TP      +L +   L++I  TI+L L+G+    +++
Sbjct: 107 LLSVFFVSAIALSDYLVAFCLHITPPVFTVLLLDDGQHLMMILFTITLPLIGFSLHHLMR 166

Query: 92  ELFISYNR------------ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFD 135
             F  + R             S LS +D L+GL N     + L +  E  +    ++  D
Sbjct: 167 RRFDHFTRRLVRQLYEEKESFSDLSMLDPLTGLYNRRGLKNRLDTVLENHAGSHFVLLLD 226

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK  NDN+GH +GD+ +A +S  +     +   V R GGEEF       +   A  L
Sbjct: 227 IDHFKAYNDNYGHAMGDQALARVSVAIRDAVRSRDVVTRYGGEEFLVLMTNVNASIAMKL 286

Query: 196 ANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           A  +R+ + + +I    +   S H+TISAGIA     +     +  AD+ALYVAK  GRN
Sbjct: 287 AERIRQYVVDLEIPHRFNEKVSTHVTISAGIAP-IFDDDFDQAVANADRALYVAKNQGRN 345

Query: 254 RVVCFSDI 261
            ++ + D+
Sbjct: 346 TILAWEDL 353


>gi|258404468|ref|YP_003197210.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
 gi|257796695|gb|ACV67632.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
          Length = 531

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 96/174 (55%), Gaps = 10/174 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFIS-SLGSYNE------KLSIVFFDIDYFKQINDNFGHPV 150
           +R+ Q++  D L+GL N   F   + G +N        ++I+  DIDYFK+IND +GH  
Sbjct: 351 SRLLQMAATDELTGLYNRRRFFELARGEFNRAKRYSSPMTILLLDIDYFKRINDEYGHDA 410

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD  +  +   +     +   + RLGGEEF A    + + +A  +A  +R  IE++ IN+
Sbjct: 411 GDTALRCIVSMIASQLRSLDVLARLGGEEFVALLPETHQFDAERIAERIRSEIESTAINL 470

Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
               ++ +T+S G+A    + + +  +I RAD+A+Y AK+ GRN+ VC +   N
Sbjct: 471 FE-TTLFVTVSIGVAGYSKEMQDVGELINRADEAMYRAKRDGRNQ-VCLATPRN 522


>gi|330828259|ref|YP_004391211.1| GGDEF domain-containing protein [Aeromonas veronii B565]
 gi|328803395|gb|AEB48594.1| GGDEF domain protein [Aeromonas veronii B565]
          Length = 340

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 91/172 (52%), Gaps = 5/172 (2%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           +KEL  + N   +L+  D L+ LLN  AF   +  L    +  S++  DID FK  ND +
Sbjct: 165 IKELRAALNETRKLANEDALTSLLNRRAFDLELEGLIRSQQSFSLILTDIDRFKSFNDEY 224

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH +GD+V+   S +L       +   R+GGEEFA      S   A  +A  +R+ IE  
Sbjct: 225 GHLLGDQVLRAFSKRLRDASKEGVTAYRIGGEEFALLLPHRSLALARQMAESMRRAIERM 284

Query: 207 QI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            I +  SG  I HIT S G+ E   +E   +++ R D+ LY AK+ GRNRV+
Sbjct: 285 SILDRKSGRRIDHITASFGVGEFNGQESADSLVERTDKLLYKAKELGRNRVM 336


>gi|291613706|ref|YP_003523863.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1]
 gi|291583818|gb|ADE11476.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1]
          Length = 387

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 102/197 (51%), Gaps = 17/197 (8%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----- 128
           +++  S LLG I G +L     +   +  L+  D L+G+ N  A +     Y E+     
Sbjct: 197 VAVMASSLLGSI-GFLLMVKERTDREVLHLAMTDSLTGVPNRRALMD----YAERAMAQR 251

Query: 129 ----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
               ++++  D D+FK+IND +GHPVGD+V+  L+  L         +GR GGEEF   A
Sbjct: 252 GGRSVALLMIDADHFKRINDTYGHPVGDEVLRQLTRLLQQRLRGGDLLGRYGGEEFCVVA 311

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQ 242
             +  + A  LA  LR+ + ++ ++   G  + IT+S GIA         +  I+  AD 
Sbjct: 312 PDADAEGALKLAESLRESVASAVLDTEQG-KLSITVSIGIAHSTADAGRALKDILAEADI 370

Query: 243 ALYVAKKSGRNRVVCFS 259
           ALY AKK GRN+VV FS
Sbjct: 371 ALYSAKKGGRNQVVSFS 387


>gi|332307136|ref|YP_004434987.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174465|gb|AEE23719.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 350

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNEK--LSIVFFDIDYFKQINDNF 146
           L I    I QL+  D L+GL N     +  I+ L   +E+  LS++  D+DYFK+IND +
Sbjct: 184 LAIRNAEILQLAETDKLTGLYNREKLENTLIALLPGVDEQYPLSVMLLDVDYFKKINDQY 243

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GDKV+  L+ +L  +      V R GGEEF      +S + A  LA  +R+ I   
Sbjct: 244 GHFEGDKVLQALAKKLKDLMREEDIVARWGGEEFVVLCTNASLETAMQLAQRIREDIAK- 302

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           Q+    G    +T+S G+A+    + + +++ RAD  LY AK +GRN V+ 
Sbjct: 303 QVICGHG----LTVSVGVAQYVPGDSVESLLDRADVGLYQAKNNGRNSVIA 349


>gi|289207287|ref|YP_003459353.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
 gi|288942918|gb|ADC70617.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
          Length = 446

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 94/178 (52%), Gaps = 10/178 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           EL  S   + QL+  D L+GL N  AF  ++         + +  S++  D+D FKQIND
Sbjct: 252 ELEASNMELEQLTLTDPLTGLGNRRAFQEAIEKDVALFRRHGDPASLLILDLDAFKQIND 311

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+++   ++ L     T   V RLGGEEFA     +  ++A  +A  LR+ + 
Sbjct: 312 THGHEGGDRILRRFAELLQDRVRTTDLVCRLGGEEFAVFLRRAEPEDALAIAEALREAVA 371

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFS 259
             ++ +  G    IT+S G+A    ++ ++T   +   ADQA+Y +K+ GRNRV  ++
Sbjct: 372 AMEVALDDGARASITVSIGVAWLSLEDDLTTTRALCRAADQAMYASKRRGRNRVTDYT 429


>gi|149920296|ref|ZP_01908767.1| FHA domain/GGDEF domain protein [Plesiocystis pacifica SIR-1]
 gi|149818883|gb|EDM78323.1| FHA domain/GGDEF domain protein [Plesiocystis pacifica SIR-1]
          Length = 269

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 97/181 (53%), Gaps = 11/181 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136
           +ISG+ ++  +  ++++  ++R D L+G+ N  AF       ++    Y   L+++ FDI
Sbjct: 88  FISGTNVEAAY--HDQLYAMTRYDALTGVYNRRAFDEKITDEVARARRYGRPLALLLFDI 145

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+ ND +GH  GD V+  ++  +        FV R GGEEFAA  L   E    + A
Sbjct: 146 DHFKRCNDTYGHRAGDHVLREVAQLVQRRARKHDFVARYGGEEFAALLLEFEEPGPRLFA 205

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++R ++++ +     G  I IT+S G+       E    +I  ADQ LY AK+ GRNRV
Sbjct: 206 EEVRALVQDHEFEF-EGTVIPITMSIGLVLWTPEHETAGQLIEAADQCLYRAKEGGRNRV 264

Query: 256 V 256
           V
Sbjct: 265 V 265


>gi|209547741|ref|YP_002279658.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209533497|gb|ACI53432.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 392

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 99/200 (49%), Gaps = 7/200 (3%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS- 124
            E+LSL +  I     +G +S ++ +    + +R+  ++  D L+GLLN  A     G+ 
Sbjct: 186 AEDLSLAV-CIAGMTGIGALSLALHQWRLAARHRLEAIT--DPLTGLLNRRALFDQYGTR 242

Query: 125 -YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                 +++ FDID+FK +ND FGH  GD+VI   + +L           RLGGEEFA  
Sbjct: 243 PMGSTTAVIVFDIDHFKSVNDRFGHASGDRVIKAFAAELATHCRAGDIAARLGGEEFALV 302

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQ 242
              +    A + A  +R+  E  +I I     +  T+S G+A  R        ++  AD+
Sbjct: 303 LKETMPGRAELAAERIRRAFEAREIEIDD-EVLTCTVSVGVAPGRAKSLDFDAMLSAADK 361

Query: 243 ALYVAKKSGRNRVVCFSDIE 262
           ALY AK+ GRNRV     +E
Sbjct: 362 ALYAAKRGGRNRVELAGHLE 381


>gi|147678465|ref|YP_001212680.1| hypothetical protein PTH_2130 [Pelotomaculum thermopropionicum SI]
 gi|146274562|dbj|BAF60311.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 564

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 107/208 (51%), Gaps = 16/208 (7%)

Query: 68  NLSLVIISITISLLLGYISGSIL---KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
            L   II+ T+ L L +  G +    K++ +    ++ ++  D L+GL NH  F  SL  
Sbjct: 154 KLQTDIINSTVMLTLAWFIGGLADVDKDIRVM---LTDMANTDGLTGLFNHRYFHQSLQD 210

Query: 125 Y-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
           +       N +LS++ FDIDYFK  NDN+GH  GD+++  +   L  V  +P    R GG
Sbjct: 211 HIKQARENNSQLSLIMFDIDYFKFYNDNYGHQKGDELLKEMGLILNTVVKSPCIAARYGG 270

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAGIAE-RCHKEPIST 235
           +EF     GS E+ A  +A ++R+ IE+     ++  P   IT+S G+A    H      
Sbjct: 271 DEFTVIVPGSKER-AMEIAEEIRQAIESQPFEGAAVQPKGKITVSLGVATFPKHGSTPKE 329

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +I  AD+A+Y AK  G    + FS +++
Sbjct: 330 LIRSADEAMYKAKYQGNKAQLYFSVMDD 357


>gi|218887844|ref|YP_002437165.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218758798|gb|ACL09697.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 698

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 9/165 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ QL+  D L+G+ N   F++ L         Y   LS++  D D+FK IND +GH  G
Sbjct: 506 RLEQLATTDELTGVANRRHFMARLEDEAARAQRYGRPLSVLLLDADHFKSINDTWGHEAG 565

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++D + +       +GRLGGEEF      ++++ A   A  +R  +E++ + + 
Sbjct: 566 DMVLRHITDVMGLSLRENDLIGRLGGEEFGVLLPETAQERALRTAERIRAAVEDAPVAVR 625

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
               +  T+S G AE R   + +  +I RAD  L  AK+ GRNRV
Sbjct: 626 D-VWVGCTVSVGAAEYRGANDSLDDLIRRADHMLMRAKEEGRNRV 669


>gi|325475238|gb|EGC78423.1| GGDEF domain-containing protein [Treponema denticola F0402]
          Length = 371

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 101/201 (50%), Gaps = 12/201 (5%)

Query: 58  FYGLEYILVENL-SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           F   E  ++EN+ SL  I+I  S LL   +  I+  L + +            + L+ H 
Sbjct: 172 FTDYEKNIIENIASLAAIAINNSQLLEMTTTDIMTHLKLKHY---------FFTLLMEHL 222

Query: 117 AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
             I+S G   E LSI+  DID+FK IND +GH  GD V+  ++  +           R G
Sbjct: 223 YTINSSGEKKETLSILMIDIDFFKNINDTYGHAAGDIVLEEVAKIIKSCTRNADTAARYG 282

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPIST 235
           GEEF      +S   A  +A  +RK +E   I +  G  I++TIS G++      E   +
Sbjct: 283 GEEFVVMLNNTSASAAMAVAERIRKSVEEKSI-MYDGKKINVTISIGVSSYNFDLESAKS 341

Query: 236 IIYRADQALYVAKKSGRNRVV 256
           I+ RAD+ALY +K++GRNRV 
Sbjct: 342 IVERADKALYESKQNGRNRVT 362


>gi|330872987|gb|EGH07136.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 425

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 92/165 (55%), Gaps = 11/165 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +++  D L+GL N  A        I++     +  S +  DID+FK +ND +GHP 
Sbjct: 255 QKLLEIAHSDPLTGLDNRRAAEHTLERMINTARIAGKPFSFIICDIDHFKSVNDQYGHPA 314

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  ++  L           R GGEEF      SS ++AA LA+ +RK +EN +I  
Sbjct: 315 GDSVLKSVAAILKHRIRAFDVAARWGGEEFLILVPDSSLKQAAELADRIRKGVENLEIP- 373

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +GP   +TIS G++E    E  +++I RAD+ALY AK+ GRNRV
Sbjct: 374 EAGP---VTISLGVSELSPGETAASLIQRADKALYQAKRLGRNRV 415


>gi|15896780|ref|NP_350129.1| GGDEF domain-containing protein [Clostridium acetobutylicum ATCC
           824]
 gi|15026638|gb|AAK81469.1|AE007850_10 Membrane associated GGDEF domain containing protein [Clostridium
           acetobutylicum ATCC 824]
 gi|325510951|gb|ADZ22587.1| Membrane associated GGDEF domain containing protein [Clostridium
           acetobutylicum EA 2018]
          Length = 367

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 106/216 (49%), Gaps = 10/216 (4%)

Query: 50  LFYIGLTPFYGLEYI--LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107
           L  I +T +Y L  +  +++ L    I I +S +L Y+    +K     Y R  + S  D
Sbjct: 141 LLMINVTDYYMLRKVDGIIDVLVQYSIIILVSGILQYMLLDYVKTSNKLYRRYKRDSTKD 200

Query: 108 CLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+GL N   F          +   NE LS +  DIDYFK+IND +GH +GD ++  LS 
Sbjct: 201 FLTGLSNVRQFDKVFSTARERVKQNNESLSCIMIDIDYFKKINDTYGHAIGDVILRELSK 260

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            L+        V R+GGEEF       S ++   +A  + K +   +  I     I+IT+
Sbjct: 261 VLMKNVRGRDLVARVGGEEFCILLFNCSREKTFQIACRINKEVAEHKFFIGEDEFINITV 320

Query: 221 SAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255
           S G++      P I  +  RAD ALY AK+SGRN+V
Sbjct: 321 SVGLSIYPEITPEIEDLRERADAALYAAKRSGRNKV 356


>gi|220934553|ref|YP_002513452.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995863|gb|ACL72465.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 332

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 85/162 (52%), Gaps = 9/162 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LSR D L+ L N   +   LG        Y    S++ FDID+FK++ND +GH  GD+VI
Sbjct: 154 LSRTDRLTQLNNRGFWEECLGGEFARCKRYGTVSSLIMFDIDHFKKVNDTYGHQAGDEVI 213

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +S  L          GR GGEEF      +S ++A + A+ LR++ E   +      +
Sbjct: 214 RTVSQLLTKTLRDTDIAGRYGGEEFGVILTDTSAEKARVFADRLRRLNEAVTVR-HEDVA 272

Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           I  TIS GIA+     E  S  I  AD+ALY++K+ GRNRV 
Sbjct: 273 IRFTISLGIAQFDPAMERHSQWIEAADKALYLSKQGGRNRVT 314


>gi|254457638|ref|ZP_05071066.1| GGDEF domain/pas/pac sensor domain protein [Campylobacterales
           bacterium GD 1]
 gi|207086430|gb|EDZ63714.1| GGDEF domain/pas/pac sensor domain protein [Campylobacterales
           bacterium GD 1]
          Length = 662

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 11/166 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           N++ +L+ ID L+G+ N           ++    Y+E+ ++V FDID+FK +ND +GH  
Sbjct: 499 NKLQKLATIDSLTGIYNRHKTNEEIEIQLAKAKRYDEEFALVMFDIDHFKDVNDTYGHDA 558

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD ++   SD ++         GR GGEEF        + EA  +A+ +R+ +     N 
Sbjct: 559 GDDILKEFSDVVLKHIRESDRFGRWGGEEFMLLLPKVDKDEAIRVADKIREFVSRYPFNK 618

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S     IT+S G +     +   +++ R D+ALY AK SGRNRV+
Sbjct: 619 LS----RITVSVGASIYRENDTKESLLKRTDEALYQAKSSGRNRVI 660


>gi|241764929|ref|ZP_04762929.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
 gi|241365491|gb|EER60256.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
          Length = 246

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 4/156 (2%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+G+LN +A I  +  + ++  L+++  DID+FK++ND+FGHP+GD VI  + + L  
Sbjct: 89  DPLTGVLNRAAIIERVNQHAQQNDLALIVLDIDHFKRVNDSFGHPIGDTVILGVVNCLKA 148

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           V      +GR+GGEEF           +  +A  +RK IE  +  +  G    IT S G+
Sbjct: 149 VVPRCAHIGRVGGEEFTVLLPHRETPASEQVAETMRKAIETREFGLPDGS--RITASFGV 206

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +              AD+ALYVAK+ GRN+VV  +D
Sbjct: 207 SHLSRGGCFDDAYGLADEALYVAKRGGRNQVVRAAD 242


>gi|241204961|ref|YP_002976057.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858851|gb|ACS56518.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 355

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/184 (34%), Positives = 95/184 (51%), Gaps = 18/184 (9%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQ 141
            + KEL   Y RI+     D L+ L N  AF   L       S     +++  DID FK+
Sbjct: 164 QVRKELD-EYKRIAN---TDSLTRLSNRRAFDDRLAAIFDNSSMRPVTALLLCDIDNFKK 219

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GHPVGDKV+A ++  +       +FV R GGEEFA    G++ +E   +A  +R+
Sbjct: 220 INDTYGHPVGDKVLATVASVIRSNVRRDIFVARTGGEEFALIIDGNTPEEVTGIAERIRR 279

Query: 202 IIE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +E     NS+  ++ GP   +T+S GI    + E    +  + D ALY AK +GRN  +
Sbjct: 280 TLETTPFKNSRTRVNYGP---VTVSIGICMASNAEDAGELYSKTDIALYGAKNAGRNCTI 336

Query: 257 CFSD 260
            + D
Sbjct: 337 LYQD 340


>gi|157736990|ref|YP_001489673.1| GGDEF/PAS domain-containing protein [Arcobacter butzleri RM4018]
 gi|157698844|gb|ABV67004.1| GGDEF/PAS domain protein [Arcobacter butzleri RM4018]
          Length = 463

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 95/182 (52%), Gaps = 12/182 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL+     + Q + ID L+G+ N   F       +         LSI+  DID FK+IND
Sbjct: 284 ELYSMAQTLEQQASIDILTGIFNRMKFEEFFDLEVQKAKIQKNPLSIILLDIDDFKRIND 343

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            FGH  GD+VI  +S+ L   V GT   + R GGEEF      +S ++A I+AN+LR+II
Sbjct: 344 TFGHDEGDEVIKSISNLLTKNVRGTDT-LSRWGGEEFVILLPNTSLEQAKIVANNLRRII 402

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                N+S      IT S G+A   +++    +  R D+ LY AK SG+N V+   ++ N
Sbjct: 403 FEHDFNVSQKK---ITCSFGVAIYNYEDTKEKLFKRVDKILYKAKNSGKNIVLGEDELNN 459

Query: 264 NT 265
            T
Sbjct: 460 LT 461


>gi|316934069|ref|YP_004109051.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
 gi|315601783|gb|ADU44318.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
          Length = 411

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 91/176 (51%), Gaps = 11/176 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
           ++ E  +S ++ +  + +D L+G+LN   F  +     E+       +S + FDID+FK 
Sbjct: 205 LVSERAVSMHKAA--ASLDPLTGILNRRGFSEACARMIEREAEAGRPVSALIFDIDHFKS 262

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND FGHP GD+V+   +  +          GR+GGEEF AA L     EA   A  +R+
Sbjct: 263 VNDRFGHPAGDEVLKLFAAIVSNSLRISDLCGRIGGEEF-AALLPCPIDEAVTAAERVRE 321

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +N  I +   P +  T+S G+A       +  ++  AD ALY AK+ GRNRVV 
Sbjct: 322 AFQNCGIEVDDAP-VATTVSIGVAGGPAGVVLDVLLAAADTALYQAKRGGRNRVVA 376


>gi|117925030|ref|YP_865647.1| diguanylate cyclase [Magnetococcus sp. MC-1]
 gi|117608786|gb|ABK44241.1| periplasmic/7TM domain sensor diguanylate cyclase [Magnetococcus
           sp. MC-1]
          Length = 464

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 81/164 (49%), Gaps = 11/164 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ QLSR D L+GL N S    +L             LS+V  DID+FKQ+ND +GH V
Sbjct: 301 ERLKQLSRTDLLTGLPNRSFLNETLQHELLRAHRNGRPLSVVLLDIDHFKQVNDQYGHLV 360

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+   +  L         VGR GGEEF      S  ++  +L + L  ++       
Sbjct: 361 GDQVLVDFAQLLKKTVRGQDHVGRWGGEEFLILCPESDLKQTLVLCDRLHTVVRTHHFAT 420

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
                   T SAGIA     E    ++ RAD+ALY AK+SGR++
Sbjct: 421 QQ----QQTFSAGIALFTPPEEADGMLQRADEALYKAKRSGRDQ 460


>gi|325123877|gb|ADY83400.1| sensor histidine kinase [Acinetobacter calcoaceticus PHEA-2]
          Length = 360

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 133/287 (46%), Gaps = 36/287 (12%)

Query: 7   DFLSIWLCHEKNL-ESFSPHTFMIYFS-------------IFFSIFIATVIFIANIFLFY 52
            F ++ LCH+  L  S SP T + Y               ++ ++  AT+I     +L  
Sbjct: 74  QFFALMLCHDGYLIGSISPATMVGYVGTIGVGLVLFDRKIVYSALVPATIILTVCTYLSM 133

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK---------ELFISYNR---- 99
            G      L Y  + N   +  + T S  LG ++  I+          E+ ++  R    
Sbjct: 134 TG-----ALAYAPLFNFRAMDHAQTNSFWLGSMAFFIMPILLACFVLFEILLTQWRQRET 188

Query: 100 -ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVI 155
            I +LS+ID L+ +LN  +    L S +++    ++V  DID+FK+IND +GH  GD+V+
Sbjct: 189 YIQRLSQIDPLTNVLNRRSLNMHLESLHQQQFDYAVVLLDIDHFKKINDIYGHHQGDQVL 248

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L     +   +GR GGEEF      +   +A  +A   R+ ++   +  +    
Sbjct: 249 IEIAQCLSENLRSEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRQALQELPVFTAQNNP 308

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           IHI+ S GI+     +    +I +ADQALY  K SGRN+V  F   E
Sbjct: 309 IHISASFGISSSAFAQDPYLVIRQADQALYAVKASGRNQVRTFHQTE 355


>gi|91793233|ref|YP_562884.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91715235|gb|ABE55161.1| diguanylate cyclase [Shewanella denitrificans OS217]
          Length = 339

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 96/176 (54%), Gaps = 13/176 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEKL---SIVFFDIDYFK 140
           S LKE     + +S+++  D L+ L N  A+    +  +  +N+     S++  DID FK
Sbjct: 163 SRLKE---EMDNLSKVAMTDELTSLNNRRAYELFAVEQVAKFNQTQTVCSLLMIDIDLFK 219

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
             ND +GH +GDKV+A+++  L        FV R GGEEF     G+  Q+A  LAN+LR
Sbjct: 220 GFNDTYGHLIGDKVLAYVALSLKQGVKGADFVARYGGEEFVILLPGTDLQDAVTLANNLR 279

Query: 201 KIIENSQINISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +++ + Q+ +          +T+S G+A     +   T++ RAD+ LY AK++GR+
Sbjct: 280 ELVSHKQLTVGKEKKQQLGKVTVSIGVASIQTGDDADTLLSRADEKLYEAKQAGRD 335


>gi|254524057|ref|ZP_05136112.1| ggdef family protein [Stenotrophomonas sp. SKA14]
 gi|219721648|gb|EED40173.1| ggdef family protein [Stenotrophomonas sp. SKA14]
          Length = 465

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 94/173 (54%), Gaps = 10/173 (5%)

Query: 97  YNRISQL-SRIDCLSGLLNHSAFISS-------LGSYNE-KLSIVFFDIDYFKQINDNFG 147
           + RI +L +  D L+ LLN   F+ +       L + N    S++  D+D+FK IND  G
Sbjct: 281 FERIGELDAGSDALTNLLNRR-FLPTVLRREIELATRNHTPFSLLLLDLDHFKAINDGHG 339

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+ +  ++  L  +     ++ R GGEEF    + +SE +A ++A  LR+ I  S 
Sbjct: 340 HDAGDRALQHVAGLLGQLTRGSDYLFRYGGEEFVVVLVAASESQAEVIAESLRRQIAQSS 399

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + +++G  + +T S G+A          ++ RAD A+Y AK+SGRNRVV  SD
Sbjct: 400 VALANGQVLALTASIGVAGHDGHPDYERLMARADAAMYEAKRSGRNRVVVASD 452


>gi|298291065|ref|YP_003693004.1| diguanylate cyclase [Starkeya novella DSM 506]
 gi|296927576|gb|ADH88385.1| diguanylate cyclase [Starkeya novella DSM 506]
          Length = 390

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 105/194 (54%), Gaps = 11/194 (5%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN 126
           E+LSL+++ I     +G ++ ++ +    S +R+  ++  D L+GLLN  A   ++G   
Sbjct: 187 EDLSLLVM-IACVPGIGAVTLALNQARIASKHRLDAMT--DPLTGLLNRRALFDAVGERP 243

Query: 127 --EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
             E+ +++ FDID+FK IND  GH VGD+VIA  +  L           RLGGEEFA   
Sbjct: 244 IAERTAVLVFDIDHFKSINDRHGHAVGDRVIAVFARALEEQRPAAAHAARLGGEEFALVL 303

Query: 185 LGSSEQEAAILANDLRK--IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRAD 241
             ++ + +  +A  +R+      ++++I+    +  + SAGIA    H      ++  AD
Sbjct: 304 PAATAEGSLRIAEQVRRSFCTLTAELDIA---DLACSASAGIAFGVTHGRTFEQVLNEAD 360

Query: 242 QALYVAKKSGRNRV 255
            ALY AK +GRNRV
Sbjct: 361 AALYAAKNAGRNRV 374


>gi|330828523|ref|YP_004391475.1| GGDEF family protein [Aeromonas veronii B565]
 gi|328803659|gb|AEB48858.1| GGDEF family protein [Aeromonas veronii B565]
          Length = 383

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 105/203 (51%), Gaps = 11/203 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKEL--FISYNRISQLSRIDCLSGLLNHSAF-- 118
           Y+L     LV++ +   +L  +   +I++E        ++ QL++ D L+G+ N   F  
Sbjct: 176 YMLGLGCGLVVLEVGRRMLHRWFELAIMREHENLTLLRQLDQLAKQDPLTGVANRRHFNI 235

Query: 119 -----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FV 172
                ++        LS++  D+DYFK+ ND++GH VGD  +  ++  L     TP   V
Sbjct: 236 ELDRALAHSQESGAPLSLILIDVDYFKRFNDHYGHQVGDMCLKEVAQALNRAVRTPSDLV 295

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKE 231
            R GGEEF      +  Q AA +A  L+  + + ++ +++S  +  +T+S GIA     E
Sbjct: 296 ARYGGEEFMLLLPNTDRQAAASVAQRLQDGLASLRLEHLASEVAPWVTVSQGIASNVSGE 355

Query: 232 PISTIIYRADQALYVAKKSGRNR 254
             S ++ RADQALY AK  GRN+
Sbjct: 356 GASQLLERADQALYRAKALGRNQ 378


>gi|77543223|gb|ABA87033.1| hypothetical protein [Vibrio cholerae]
 gi|259156472|gb|ACV96416.1| pas/pac/ggdef-domain containing protein [Vibrio cholerae Mex1]
          Length = 423

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 99/181 (54%), Gaps = 12/181 (6%)

Query: 84  YIS-GSILKELFISYNRISQLSRIDCLSGLLNHS---AFISSLGSY----NEKLSIVFFD 135
           Y+S G  + E       + + + +D L+GL N +   A +S   S+     E +S++  D
Sbjct: 237 YVSVGKDVTERLREEQALRESATVDQLTGLFNRNHGKALLSEAYSFTLSREEPMSLILCD 296

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FKQIND+FGHPVGD+++A +S  L         V R GGEEF       ++  AA L
Sbjct: 297 IDHFKQINDSFGHPVGDQILAQVSGLLRKSVRGNDRVIRWGGEEFLILLENCTDMVAAEL 356

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A  LR  I + Q   S G    +T+S G+A    KE +  +I R D+ALY +K++GRN++
Sbjct: 357 AERLRLRIASEQFQ-SVG---KVTVSLGVASLFQKESLEQLISRCDEALYKSKRNGRNQL 412

Query: 256 V 256
            
Sbjct: 413 T 413


>gi|315636182|ref|ZP_07891436.1| GGDEF/PAS domain protein [Arcobacter butzleri JV22]
 gi|315479543|gb|EFU70222.1| GGDEF/PAS domain protein [Arcobacter butzleri JV22]
          Length = 463

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 90/170 (52%), Gaps = 12/170 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL+     + Q + ID L+G+ N   F       +     +   LSI+  DID FK++ND
Sbjct: 284 ELYSMAQNLEQQASIDILTGIFNRMKFEEYFDLEVQKAKMHRNPLSIILLDIDDFKKVND 343

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            FGH  GD+VI  +S+ L   V GT   + R GGEEF      +S ++A I+AN+LRKII
Sbjct: 344 TFGHNEGDEVIKSISNLLTKNVRGTDT-LSRWGGEEFVILLPSTSLEQAKIVANNLRKII 402

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +   NI   P   I+ S G+A    ++    +  R D+ LY AK SG+N
Sbjct: 403 FDHDFNI---PQQKISCSFGVAIYNPEDTKEELFKRVDKILYKAKNSGKN 449


>gi|254283017|ref|ZP_04957985.1| sensory box histidine kinase [gamma proteobacterium NOR51-B]
 gi|219679220|gb|EED35569.1| sensory box histidine kinase [gamma proteobacterium NOR51-B]
          Length = 494

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 92/178 (51%), Gaps = 15/178 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  ++  D L+G  N  A  S + S       ++E LS+   DID+FK +NDN+GH +
Sbjct: 318 RRLKAIADKDPLTGAGNRRALESVIKSELSRAHRHDEPLSVAILDIDWFKSVNDNYGHLM 377

Query: 151 GDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           GD+V   IA L   L+  + T     R+GGEEFA     +S  EA  LA  LR+ +    
Sbjct: 378 GDRVLIDIAKLCKDLIRPYDT---FARIGGEEFALLLPKTSVPEAERLAERLRQRVAEHT 434

Query: 208 INISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
                   + +TIS G+A      + +  +I  AD+ALY AK  GRNRVV F  + +N
Sbjct: 435 TQAGEN-RVQVTISIGVALLAKGAKTLEEMIESADRALYCAKLDGRNRVVTFEQLRSN 491


>gi|331010553|gb|EGH90609.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 796

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/186 (35%), Positives = 95/186 (51%), Gaps = 18/186 (9%)

Query: 85  ISGSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129
           + GS+L   F+S      R+ Q    LS  D L+G  N   F       +  +  +   L
Sbjct: 609 VDGSVLWHGFLSDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNL 668

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           SI+  DID+FK+IND FGH  GD+V+  +S+++     +     RLGGEEF     G+  
Sbjct: 669 SIIMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRG 728

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            +A  LA  LR+ + N  I    G    +T S GIA     E I T++ RAD  +Y AK+
Sbjct: 729 SQAYQLALSLREGLRNQVIE---GVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQ 785

Query: 250 SGRNRV 255
           +GR+RV
Sbjct: 786 AGRDRV 791


>gi|302336914|ref|YP_003802120.1| diguanylate cyclase with PAS/PAC sensor [Spirochaeta smaragdinae
           DSM 11293]
 gi|301634099|gb|ADK79526.1| diguanylate cyclase with PAS/PAC sensor [Spirochaeta smaragdinae
           DSM 11293]
          Length = 522

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 94/177 (53%), Gaps = 11/177 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQINDNFGHP 149
            ++  L+  D L+G+ N    +SS G         Y   L+++ FD+D FK++ND +GH 
Sbjct: 347 EKMETLASKDPLTGISNRR-HLSSFGEKEVMRAFHYGTNLALIMFDLDLFKKVNDTYGHD 405

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+++  + +    +      +GR GGEEF      +S  +A ++A  +R  IE S + 
Sbjct: 406 VGDQLLIHIVEIARGLVREADLLGRYGGEEFVILLPQTSLSDAQLIAERIRSSIEISPLA 465

Query: 210 ISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           + SG SI +T S G+         S  ++  +AD+ALY AK  GRN+VV F + +N 
Sbjct: 466 LESGTSIPMTASFGVTSSLGSSDFSFESLCKKADEALYRAKAEGRNQVVTFLETDNE 522


>gi|212633062|ref|YP_002309587.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212554546|gb|ACJ27000.1| GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 395

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 108/210 (51%), Gaps = 31/210 (14%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           L+  L  V +SIT +L + YI   +    F++Y         D L+GL +  A  + + S
Sbjct: 196 LMPELLSVSVSIT-ALAIVYILTVLTDSYFLAYR--------DELTGLASRRALYNLVLS 246

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
              K S+   DID+FK+ ND +GH VGD+V+  ++ ++  V G      R GGEEF    
Sbjct: 247 LGRKYSVAMLDIDHFKKFNDTYGHDVGDQVLKLVASKISQVRGGGK-AFRYGGEEF--TI 303

Query: 185 LGSSEQEAAILA--NDLRKIIENSQINI-----------------SSGPSIHITISAGIA 225
           + S +  ++IL    ++R+IIE+  I +                 S   ++++TIS G++
Sbjct: 304 VFSRKDTSSILHFLEEVREIIEDYDITLRNEQRKQQTKAKRGKAQSQSKTVNVTISIGVS 363

Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           E  H E     + +ADQALY AKK GRN+V
Sbjct: 364 EHQHGETFEQTLKKADQALYRAKKKGRNQV 393


>gi|312142851|ref|YP_003994297.1| diguanylate cyclase [Halanaerobium sp. 'sapolanicus']
 gi|311903502|gb|ADQ13943.1| diguanylate cyclase [Halanaerobium sp. 'sapolanicus']
          Length = 442

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 100/181 (55%), Gaps = 19/181 (10%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           S  ++ +L     +I+++S  D + G+ N S FI+ L         Y+  LS++ +DID 
Sbjct: 267 SNEVITDLENKVAKITKISETDDMLGIYNRSKFINILEKEIYRSRRYDNDLSLIMYDIDC 326

Query: 139 FKQINDNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           FK+INDN+GH VGD    KV   + DQ+  +      + R GG+EF      +S +++  
Sbjct: 327 FKEINDNYGHQVGDEILIKVTKMIKDQIRKIDS----LARYGGDEFMIINPETSLEKSYQ 382

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           LA  LRK  E S+I      S  I+ S G+ E   ++ I +++ RAD ALY AK++GRN+
Sbjct: 383 LAERLRK--EVSKIETEKVAS--ISCSFGVVELEAEDDIDSLLKRADDALYQAKENGRNK 438

Query: 255 V 255
           V
Sbjct: 439 V 439


>gi|261404460|ref|YP_003240701.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Paenibacillus sp. Y412MC10]
 gi|261280923|gb|ACX62894.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Paenibacillus sp. Y412MC10]
          Length = 618

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 97/194 (50%), Gaps = 14/194 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128
           I +S++L Y      K+LF  Y ++ + +  D  +GL NHS F       I    +    
Sbjct: 219 IGLSVMLSYS----FKQLFTMYKQVQEKAIKDQRTGLYNHSYFENLLEDEIKKAKTNETP 274

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGS 187
           LS+   DID FK+ ND FGH  GD ++ FL + L V   T   V  R GGEEF     G 
Sbjct: 275 LSLAMIDIDDFKKYNDQFGHLKGDMLLGFLGNYLKVESETAEVVASRFGGEEFTILMPGY 334

Query: 188 SEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALY 245
            + +A    N LRK + ++  + +   PS  ++ SAG+A  R      S ++  ADQALY
Sbjct: 335 DDHKARSFINRLRKKLNDTYFDGVEIFPSGCLSFSAGVASYRIDIHDKSQLVELADQALY 394

Query: 246 VAKKSGRNRVVCFS 259
            AKK G+N V  + 
Sbjct: 395 YAKKQGKNNVHVYG 408


>gi|85716309|ref|ZP_01047282.1| diguanylate cyclase [Nitrobacter sp. Nb-311A]
 gi|85696825|gb|EAQ34710.1| diguanylate cyclase [Nitrobacter sp. Nb-311A]
          Length = 354

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 96/187 (51%), Gaps = 9/187 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           +S + +  L  S   I   S  D L+GL N   F       ++   S  E LS++ FDID
Sbjct: 158 LSKTEIHNLQHSLEAIRAESMTDPLTGLGNRKYFDRAVADAVALAASEGEPLSLLMFDID 217

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK  NDN+GH  GD+V+  ++  L           R GGEEFA     ++ ++A  +A+
Sbjct: 218 HFKSFNDNYGHLTGDQVLRLVAMSLKQNIKGQDITARYGGEEFAVVLPSTALKQALTVAD 277

Query: 198 DLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +R+ +   ++   S   I   +TIS G++     +   +++ RAD  LY AK+SGRNR 
Sbjct: 278 HVRRAVMAKELKKKSTGEILGRVTISIGVSMLRPGDTPDSLMERADACLYAAKRSGRNRA 337

Query: 256 VCFSDIE 262
           VC +D E
Sbjct: 338 VCETDPE 344


>gi|114561654|ref|YP_749167.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114332947|gb|ABI70329.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 641

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 104/186 (55%), Gaps = 14/186 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEK----LSIVFFDIDYFKQI 142
           L+EL     ++++ + ID L+G+ N SAF   L   G  + +    +S++  DID FK I
Sbjct: 457 LRELNEVNQKLTEQNTIDSLTGVKNRSAFDRRLIAEGRISRRQQTPMSLLMIDIDKFKNI 516

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD  I  +++ L      P   V R GGEEFA     +  + A ++A  +R+
Sbjct: 517 NDQYGHLSGDYTIKMIANTLCEYVKRPTDLVSRFGGEEFAIILPCTDIEGALLVAEQIRQ 576

Query: 202 IIENSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            I    I + +G +I +T+S G++E      + P+  ++ +AD+ALY AK+SGRN+ VC+
Sbjct: 577 AISELTI-VHNGHTIPLTVSIGVSETIIESDEHPM-LLLEQADKALYKAKRSGRNK-VCY 633

Query: 259 SDIENN 264
             +E +
Sbjct: 634 YPLETD 639


>gi|304407404|ref|ZP_07389057.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9]
 gi|304343845|gb|EFM09686.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9]
          Length = 525

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 94/178 (52%), Gaps = 10/178 (5%)

Query: 84  YISGSILKE---LFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDID 137
           +++G+++K    L    + +S  +R D L+GL N +    +++   S     +++  DID
Sbjct: 348 HLAGAMMKAVQGLQTQADEMSLQARTDSLTGLANRTGLEEWLTERRSVPGGYTLLVIDID 407

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK +ND FGH  GD+ +  L+  L    G    V RLGGEEF      +S     +LA 
Sbjct: 408 HFKSVNDKFGHHTGDETLVHLAHILQAESGADDLVCRLGGEEFIVLLPAASLDTGTMLAE 467

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +R+  E S I+ +  P   IT+S G+A+         +  RADQALY AK++GRNR 
Sbjct: 468 RVRRQTERS-ISPTGSP---ITVSIGVAQCVDAVDFEQVFQRADQALYEAKRTGRNRT 521


>gi|294624059|ref|ZP_06702817.1| signal GGDEF domain protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292601642|gb|EFF45621.1| signal GGDEF domain protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 194

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAFIS----SLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N +  +S     + S N     L+I  FD+D+FK +ND +GHP GD V+  ++
Sbjct: 30  DGLTGLFNRAYIVSLLNKEVSSANRSRVALAIAMFDLDHFKSVNDTYGHPAGDTVLRTVA 89

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +L      P  VGR GGEE  A   G     +A L +DL   +    I +  G  + +T
Sbjct: 90  SRLTENIRAPDQVGRYGGEELLAIMPGLQPPASARL-SDLLASVAGRPIELDGGIQLVVT 148

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S GIA     E  + ++ RAD+ALY AK  GRNR+V
Sbjct: 149 SSIGIAWLRPSETAAELLRRADKALYKAKHEGRNRIV 185


>gi|329928629|ref|ZP_08282483.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
 gi|328937592|gb|EGG34007.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
          Length = 618

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 97/194 (50%), Gaps = 14/194 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128
           I +S++L Y      K+LF  Y ++ + +  D  +GL NHS F       I    +    
Sbjct: 219 IGLSVMLSYS----FKQLFTMYKQVQEKAIKDQRTGLYNHSYFENLLEDEIKKAKTNETP 274

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGS 187
           LS+   DID FK+ ND FGH  GD ++ FL + L V   T   V  R GGEEF     G 
Sbjct: 275 LSLAMIDIDDFKKYNDQFGHLKGDMLLGFLGNYLKVESETAEVVASRFGGEEFTILMPGY 334

Query: 188 SEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALY 245
            + +A    N LRK + ++  + +   PS  ++ SAG+A  R      S ++  ADQALY
Sbjct: 335 DDHKARSFINRLRKKLNDTYFDGVEIFPSGCLSFSAGVASYRIDIHDKSQLVELADQALY 394

Query: 246 VAKKSGRNRVVCFS 259
            AKK G+N V  + 
Sbjct: 395 YAKKQGKNNVHVYG 408


>gi|218780527|ref|YP_002431845.1| periplasmic/7TM domain sensor diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761911|gb|ACL04377.1| periplasmic/7TM domain sensor diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 589

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 10/192 (5%)

Query: 75  SITISLLLGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLGS------- 124
           ++ +SL LG    ++ +E   L +   R+ +LS  D L+GL N   F + + S       
Sbjct: 396 TVLLSLALGDRINALQQEKRVLQVQEKRLMELSIRDELTGLFNKRWFSTKISSEIENCRA 455

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
            ++ LS++  DID+FK+ ND +GH +GD V+  L   + V         R GGEEF    
Sbjct: 456 VDQPLSLIILDIDHFKRFNDAYGHAMGDTVLNQLGKIISVNVRERDVPCRYGGEEFTIIL 515

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
                ++AA +A  LR I         SG  I  TIS G AE    +  +++  +ADQAL
Sbjct: 516 PLIDLKKAAQIAERLRGIFSRFVFRTGSGEKIKATISLGAAELSPTDDAASLFEKADQAL 575

Query: 245 YVAKKSGRNRVV 256
           Y AK SGR+RV+
Sbjct: 576 YRAKNSGRDRVI 587


>gi|330881084|gb|EGH15233.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 566

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/186 (35%), Positives = 95/186 (51%), Gaps = 18/186 (9%)

Query: 85  ISGSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129
           + GS+L   F+S      R+ Q    LS  D L+G  N   F       +  +  +   L
Sbjct: 379 VDGSVLWHGFVSDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNL 438

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           SI+  DID+FK+IND FGH  GD+V+  +S+++     +     RLGGEEF     G+  
Sbjct: 439 SIIMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRG 498

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            +A  LA  LR+ + N  I    G    +T S GIA     E I T++ RAD  +Y AK+
Sbjct: 499 SQAYQLALSLREGLRNQVIE---GVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQ 555

Query: 250 SGRNRV 255
           +GR+RV
Sbjct: 556 AGRDRV 561


>gi|90023333|ref|YP_529160.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89952933|gb|ABD82948.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 476

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 90/170 (52%), Gaps = 3/170 (1%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFG 147
           +EL + ++R    +R+D L+ + N   F      L      LS++  DID+FK +ND++G
Sbjct: 290 RELSVKWSRAETQARLDPLTKIYNRRGFEERAIQLMRQKRTLSLLILDIDHFKYVNDHYG 349

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD+V+   S ++  +        R+GGEEFA      + + A ++A  +R  IE+++
Sbjct: 350 HDIGDEVLRQFSKKIAGMIRDSDVFARIGGEEFAVILADQNLELAGLMAERIRATIESTE 409

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +SS  +I  T+S G++       I   +   D+ LY AK  GRN+V  
Sbjct: 410 LPVSSDNTIKYTVSIGVSSVSEGVDIHRWLKTTDKLLYQAKAQGRNQVAA 459


>gi|293392429|ref|ZP_06636751.1| GGDEF domain protein [Serratia odorifera DSM 4582]
 gi|291425083|gb|EFE98290.1| GGDEF domain protein [Serratia odorifera DSM 4582]
          Length = 482

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 9/178 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
            R+   +  D L+G L  SA +              E +S++  D+D+FK IND++GH +
Sbjct: 299 RRLEHSASHDFLTGTLTRSALMRKTRELLEQKQRCKEAVSLLLIDVDHFKLINDSYGHVI 358

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+A     L         +GRLGGEEFA     +   +A  +   LR+ +E +QI+ 
Sbjct: 359 GDRVLANFIHLLRRELRPDQLLGRLGGEEFAIVMPRALAAQAVAMGEYLRRQVEKAQIDT 418

Query: 211 SSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
                + +TIS G+A     E   +  ++  AD ALY AK  GRNRV  F+ +  N+ 
Sbjct: 419 GDRAPLKLTISVGVASLAMNEDKSLEQLMNMADIALYRAKSLGRNRVEPFNVLSGNSV 476


>gi|220933286|ref|YP_002512185.1| diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994596|gb|ACL71198.1| diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 451

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 83/158 (52%), Gaps = 8/158 (5%)

Query: 106 IDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+G+ N  AF   L         +N  L+++ +D+D FK IND++GH  GDKVI  +
Sbjct: 293 IDQLTGVPNRQAFDERLAQEYSRWKRFNTPLALIMWDVDRFKLINDSYGHKAGDKVIRAV 352

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           + +L         V R GGEEF     G+S Q+A  +A  +R  I     +   G  + I
Sbjct: 353 AQKLKERIRETDMVARYGGEEFVMLLTGASGQDALAIAEKIRAEIAGLGFHF-RGERVPI 411

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           TISAGIA     +   T    AD+ALY AK +GRNR V
Sbjct: 412 TISAGIALFAEGDTPETAFDNADRALYEAKNTGRNRCV 449


>gi|205373494|ref|ZP_03226297.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus coahuilensis m4-4]
          Length = 721

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 74/123 (60%), Gaps = 1/123 (0%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+DYFK+IND FGH  GD+V+ ++S +L   F     +GR GGEEF A    + E E+  
Sbjct: 594 DMDYFKKINDTFGHMKGDEVLMYVSSKLNEAFRDKGIIGRYGGEEFIAILQNADEIESYT 653

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
            A +LR  I +    +  G +I +++S GI+      + IS ++  AD++LY AK +GRN
Sbjct: 654 FAENLRMTILDHPFQLPEGITIPLSLSIGISTGIKSTKTISQLVQEADESLYYAKNNGRN 713

Query: 254 RVV 256
           RV+
Sbjct: 714 RVI 716


>gi|83312400|ref|YP_422664.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82947241|dbj|BAE52105.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Magnetospirillum magneticum AMB-1]
          Length = 466

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 107/214 (50%), Gaps = 21/214 (9%)

Query: 60  GLEYILVENLSLVIISITISLLLGYIS--GSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           G++Y L      + I++ +S +L  ++  G  +++L    +R+SQ    D L+ L N + 
Sbjct: 265 GIDYALT-----IKIALGLSAVLAVVAYWGWRMRKLSRELDRLSQ---TDNLTNLPNRTR 316

Query: 118 F-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
                   ++      + LS++  D+D+FK+IND FGH VGDKV+  ++D +        
Sbjct: 317 LNLQFPIELARARRLGQGLSLIMIDVDHFKRINDEFGHLVGDKVLIAMADLVRRSVRAID 376

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
              R GGEE       S   +A ILA  +R+ + +   +         T+S G+A     
Sbjct: 377 LPARWGGEELVVLCPDSHLDQALILAERIRQAVRDHDFDTGR----RQTVSIGVATLGPS 432

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           + I  ++ RADQALY+ K SGR+RV   +D+ + 
Sbjct: 433 DDIDQLLNRADQALYIGKSSGRDRVCSEADLTDT 466


>gi|323529056|ref|YP_004231208.1| PAS/PAC sensor-containing diguanylate cyclase [Burkholderia sp.
           CCGE1001]
 gi|323386058|gb|ADX58148.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1001]
          Length = 312

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 105/203 (51%), Gaps = 11/203 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           L  +  +V + +TIS +  ++S  + +E   +  ++ + +  D L+G+ N   F + L  
Sbjct: 113 LTRDREVVAVCVTISDVT-HVS-IVQREREEAVAKLQEYADRDGLTGIANRRYFEARLQD 170

Query: 125 -------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   +S++ FD+D+FK+IND FGH VGD V+  ++ ++  V       GR GG
Sbjct: 171 EYTRWQRYGGDMSVLLFDLDHFKKINDQFGHGVGDTVLRVMAQRVAGVVRAQDTFGRFGG 230

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS-AGIAERCHKEPISTI 236
           EEFA     +  ++A  +A  +R  I ++ + +  G S+ +T S  G A R        +
Sbjct: 231 EEFALLLPCTPLEDAMRVAEKIRCTIADTPVEV-QGTSVPVTASVGGAAARPGLPAYEVL 289

Query: 237 IYRADQALYVAKKSGRNRVVCFS 259
           I  AD ALY AK+ GRNR V  +
Sbjct: 290 INEADAALYSAKRQGRNRSVALT 312


>gi|254489701|ref|ZP_05102897.1| GGDEF domain protein [Methylophaga thiooxidans DMS010]
 gi|224465110|gb|EEF81363.1| GGDEF domain protein [Methylophaga thiooxydans DMS010]
          Length = 344

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 91/162 (56%), Gaps = 6/162 (3%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           + Q +R D L+GLLN  AF   L +   +    LS+  FDID FK++ND FGH +GDKV+
Sbjct: 180 VKQTARTDGLTGLLNRGAFNRELQNLCSQGDMVLSLALFDIDNFKRLNDTFGHVLGDKVL 239

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGP 214
            + +  L           R GGEE A   L S+ +E+ ++A  +R+   +S++    S  
Sbjct: 240 QYFATLLNDHRDDIHIAARYGGEEMAMIFLHSNLEESFLMAESIRQQFASSRLKKKGSEE 299

Query: 215 SI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           SI  IT+S GI+     +   T++ RAD+ALY +K  GRNRV
Sbjct: 300 SIGQITVSVGISALQLGDTPLTLLERADKALYKSKADGRNRV 341


>gi|189423872|ref|YP_001951049.1| diguanylate cyclase [Geobacter lovleyi SZ]
 gi|189420131|gb|ACD94529.1| diguanylate cyclase [Geobacter lovleyi SZ]
          Length = 346

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 8/169 (4%)

Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           RID L+ L N + F   L         YNE  S++  D+DYFK IND+ GH  GD+++  
Sbjct: 173 RIDGLTQLANRAYFDEKLLEMILLHQRYNEPFSLMMIDVDYFKNINDSHGHQAGDRILKG 232

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           ++ ++        F+ R GG+EFA   + +S Q A +LA  +   I  S+  I  G    
Sbjct: 233 VAFKIKASLRESDFLARFGGDEFALILIKASLQPATVLAEKICTNIRESRF-ILDGTEFK 291

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           +T+S G+AE    +   +++ RAD+ALY+ K+ GRN V     +E++  
Sbjct: 292 VTLSIGVAEVHADDTPESLLQRADRALYLVKERGRNGVESKMHVESSEA 340


>gi|154248964|ref|YP_001409789.1| diguanylate cyclase [Fervidobacterium nodosum Rt17-B1]
 gi|154152900|gb|ABS60132.1| diguanylate cyclase [Fervidobacterium nodosum Rt17-B1]
          Length = 1195

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/177 (37%), Positives = 99/177 (55%), Gaps = 11/177 (6%)

Query: 88   SILKELFISYNR---ISQLSRIDCLSGLLNH---SAFISSL-GSYNEKLSIVFFDIDYFK 140
            ++L+ELF    R   + + + ID L+GL N    + FI+ L  + +++ SI   DID FK
Sbjct: 1018 TLLQELFSGQLRGVILRERANIDSLTGLYNRWKFNQFINELFDTKSKEFSIFIADIDNFK 1077

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +IND +GH VGD V+  ++  L         V R GGEEF       S+ EAA L + +R
Sbjct: 1078 KINDTYGHMVGDSVLKNIAKILKEHVRDEGLVARYGGEEFVGIVY-KSKYEAAKLCDTIR 1136

Query: 201  KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + IE   + I       +TIS G+A+   KE ++ ++  ADQ LY AK++G+NRVV 
Sbjct: 1137 ENIEKESLKIFG---FRVTISIGMADVNEKENVTELLGLADQRLYKAKEAGKNRVVW 1190


>gi|315283255|ref|ZP_07871488.1| ggdef domain-containing protein [Listeria marthii FSL S4-120]
 gi|313613103|gb|EFR87012.1| ggdef domain-containing protein [Listeria marthii FSL S4-120]
          Length = 357

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 17/197 (8%)

Query: 76  ITISLLLGYISGSIL------KELFISYNRISQLSRIDCLSGLLNHSAFISS-LGSYNEK 128
           +TI+L++G I+  ++      K+LF  Y + S L  +  LS +      I+  + + + +
Sbjct: 164 VTIALVIGVIAAGLMSNMIKSKQLFQKYEQDSTLDYLTRLSNVRQFDEKINHVMDAGSRQ 223

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAA 184
           ++++  DIDYFK IND +GH  GD ++     QL V+       G    R GGEEF+   
Sbjct: 224 VTLMLIDIDYFKNINDTYGHDAGDAIL----KQLAVILKASTTDGSEAFRNGGEEFSIVL 279

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQA 243
           L  S +E + +A  +RK  E +   I +G  + ITIS G++        S  +++ AD+A
Sbjct: 280 LDCSIEEGSDVAERVRKETEENDFIIPNGQIVKITISVGVSGSKDGANTSEGLFKSADEA 339

Query: 244 LYVAKKSGRNRVVCFSD 260
           LY AK +GRNR VC +D
Sbjct: 340 LYKAKLTGRNR-VCIAD 355


>gi|158319665|ref|YP_001512172.1| diguanylate cyclase [Alkaliphilus oremlandii OhILAs]
 gi|158139864|gb|ABW18176.1| diguanylate cyclase [Alkaliphilus oremlandii OhILAs]
          Length = 356

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 24/227 (10%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           FIAT I I ++ + +  +   Y L        +  I+S  +  +L YI  +   EL++  
Sbjct: 144 FIATWILIRDVNMVF-NVVARYAL--------ATAIVSTVVYFVLSYIYRT--NELYL-- 190

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ + +  D L+GL N   F        +++    E LS++  DID+FK++ND FGH  
Sbjct: 191 -RLKEEATRDFLTGLYNVREFEKVTNELFATIVQRKENLSLLMIDIDFFKKVNDTFGHSS 249

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  LS  +     +   V R GGEEF    LG   + A  +A  +RK +E+    I
Sbjct: 250 GDLVLKQLSTIITSSCRSFDIVSRQGGEEFTVILLGCDHKTALEIAERIRKNVEDHLFII 309

Query: 211 SSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
                I IT+S G++       +P   +++ AD ALY AK++GRN V
Sbjct: 310 DKNEEIKITVSIGVSSYPEVTNDP-HHLLHEADDALYFAKRNGRNLV 355


>gi|299541822|ref|ZP_07052145.1| diguanylate cyclase with PAS/PAC sensor [Lysinibacillus fusiformis
           ZC1]
 gi|298725560|gb|EFI66201.1| diguanylate cyclase with PAS/PAC sensor [Lysinibacillus fusiformis
           ZC1]
          Length = 514

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 98/187 (52%), Gaps = 12/187 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-SYNEK------LSIV 132
           LLL +   + LKEL     ++ QL+  D L+ + N  AF      +Y+E        +++
Sbjct: 330 LLLIFTDITELKEL---QRQLEQLAFYDELTQIYNRRAFFQQCNQAYSEARESSSAFTVI 386

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK +ND +GH +GD+++  +      V        R GGEEF  A   S+  E 
Sbjct: 387 LMDIDHFKNVNDTYGHAIGDQLLVHVVKVCQSVLKNGELFARYGGEEFVLALKDSTLLEG 446

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSG 251
             LAN L   +E+  +  + G +I  TIS G+AE    +E +  ++  AD+ALY AK++G
Sbjct: 447 QALANVLCNSVESQPLMTAEG-AIRATISCGVAEGTKGQETLYQLLNNADKALYAAKQAG 505

Query: 252 RNRVVCF 258
           RNRV  F
Sbjct: 506 RNRVHVF 512


>gi|302343664|ref|YP_003808193.1| periplasmic/7TM domain sensor diguanylate cyclase [Desulfarculus
           baarsii DSM 2075]
 gi|301640277|gb|ADK85599.1| periplasmic/7TM domain sensor diguanylate cyclase [Desulfarculus
           baarsii DSM 2075]
          Length = 581

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 88/180 (48%), Gaps = 8/180 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFFDIDYFKQIND 144
           +L  S +   +L+R D L+GL N       L      + E+   LS++  D+D FK  ND
Sbjct: 402 DLAKSRSHFMELARRDGLTGLYNRRHAFEHLRRILAEHQEQARPLSLLMLDVDDFKAFND 461

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGHP GDKV+  L+  +           R GGEEF      SS  +A  +A  +R   E
Sbjct: 462 TFGHPEGDKVLVGLAAAICQGVRARDTACRYGGEEFMVVLPDSSNADALKVAERIRDAFE 521

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            ++ N      + +T+S G A      + +  ++ RADQALY AK SG+NR V F D+  
Sbjct: 522 QTRFNPGGFRPLSVTVSIGAASLAGAGDNLEALVGRADQALYAAKASGKNRTVSFDDLPQ 581


>gi|167624500|ref|YP_001674794.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella halifaxensis HAW-EB4]
 gi|167354522|gb|ABZ77135.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella halifaxensis HAW-EB4]
          Length = 415

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 87/164 (53%), Gaps = 8/164 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ + + +D L+ + N   F       ++ +      LS+   DID+FK++ND +GH VG
Sbjct: 248 KLWEQANLDYLTNVFNRRYFFNFYQEKLTEVAQKQGSLSLALLDIDFFKKVNDTYGHDVG 307

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+   + +L   F     V R+GGEEF     G   ++A  L +  R  +E + I  S
Sbjct: 308 DEVLIEFASRLKQSFSQHFTVARIGGEEFVVGFKGLHIEKAYALIDRFRMQLEITPIETS 367

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G ++ IT+S G+ E  H E +  ++ RAD  LY AK +GRN V
Sbjct: 368 KG-ALTITVSTGVTEFGHDETVDELLKRADTGLYEAKSAGRNLV 410


>gi|260893166|ref|YP_003239263.1| diguanylate cyclase [Ammonifex degensii KC4]
 gi|260865307|gb|ACX52413.1| diguanylate cyclase [Ammonifex degensii KC4]
          Length = 615

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 100/194 (51%), Gaps = 16/194 (8%)

Query: 83  GYISGSILKELFISYNRISQLSR----IDCLSGLLNH-------SAFISSLGSYNEKLSI 131
           GY+S   +    I+  R+S+L+R    ID L+ L N        +  +      N   SI
Sbjct: 409 GYVS---ITAAMIANLRLSELNRRLSLIDPLTQLYNRRFLEEYLTHQVVEAQRLNRPFSI 465

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +F D+D FK +ND +GH VGD  +  L+  +         V R GGEEF A   G+  + 
Sbjct: 466 LFIDVDQFKNVNDFYGHEVGDIALTLLAQTIKQNLREADAVVRYGGEEFIAVLPGTDLEG 525

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250
           AA  A  +R+ +  + I + SG +I +T+S G+A+ R    P   +I RAD+A+Y AK  
Sbjct: 526 AAQAAEKVRRAVAETPICLESGENIFLTVSIGVAQYRIGLNP-EEVIQRADEAMYQAKIK 584

Query: 251 GRNRVVCFSDIENN 264
           G+N VV + + EN 
Sbjct: 585 GKNLVVAYHEGENK 598


>gi|333010824|gb|EGK30250.1| diguanylate cyclase domain protein [Shigella flexneri K-272]
 gi|333021323|gb|EGK40576.1| diguanylate cyclase domain protein [Shigella flexneri K-227]
          Length = 371

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II +   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPII-VVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              YN   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRYNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTPA-ESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367


>gi|229099841|ref|ZP_04230765.1| GGDEF domain protein [Bacillus cereus Rock3-29]
 gi|228683587|gb|EEL37541.1| GGDEF domain protein [Bacillus cereus Rock3-29]
          Length = 351

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 104/206 (50%), Gaps = 18/206 (8%)

Query: 63  YILVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHS 116
           YIL  ++S+V++ +  S+  GYI+      +L+  ELF     + Q + ID L+GL N  
Sbjct: 147 YILFNDISVVVLYLISSITTGYITFVSANYVLQSNELF---QTMKQYATIDALTGLGNVR 203

Query: 117 AFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            F   +  +       N+ L ++  D D+FK +ND +GHP GD+V+  +   L  +   P
Sbjct: 204 QFDLEMNHHIGNKHMENDSLCLLLIDTDHFKYVNDTYGHPAGDEVLKQIGCILRGISTFP 263

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
             V R GGEEFA             L   +R  +E     +  G  I IT+S GI+E  +
Sbjct: 264 DLVFRKGGEEFALLIPQRGLSYGIHLGEQIRIAVEKHSFQLLDGTKIKITVSVGISE--Y 321

Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255
           K     +I  AD ALY +K++GRN+V
Sbjct: 322 KGSQEQLIQAADDALYYSKRNGRNQV 347


>gi|120554090|ref|YP_958441.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120323939|gb|ABM18254.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 308

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 89/169 (52%), Gaps = 8/169 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I Q +  D L+G+ N  A   +L         +    S++  D+D+FK INDN GH VGD
Sbjct: 140 IEQTALTDSLTGIGNKRALDEALQRASAMADRHGAPWSLILCDLDHFKLINDNHGHVVGD 199

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++A  +++L         V R GGEEFA     ++EQEA  +A+ +R  IE+ +++   
Sbjct: 200 HILARTAEKLEQALRNSDTVYRFGGEEFAILLPHTNEQEARDVADRIRGAIESIRVDGGE 259

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            P + +T S G+A     E     + RAD+ALY AK +GRN    F+ I
Sbjct: 260 TP-LTVTASCGVAMHLTDEQPEQWLARADEALYRAKAAGRNCTRVFASI 307


>gi|118443867|ref|YP_878741.1| GGDEF domain-containing protein [Clostridium novyi NT]
 gi|118134323|gb|ABK61367.1| GGDEF domain protein, putative [Clostridium novyi NT]
          Length = 1804

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/130 (41%), Positives = 77/130 (59%), Gaps = 4/130 (3%)

Query: 126  NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            N+K SI+ FD+D+FK +ND FGH VGDKV+  +   ++         GR GGEEF +   
Sbjct: 1497 NDKFSIIMFDLDHFKNVNDTFGHQVGDKVLNNVCGIVMKNLRDGDICGRYGGEEFISILP 1556

Query: 186  GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQAL 244
            G  E +A  +A  +R  +E+S+I     P   +TIS GI+    +  +   +I +ADQAL
Sbjct: 1557 GIGESKALNIAERIRSAVEDSKILGEKHP---VTISIGISTYPQQAQLKRELIEKADQAL 1613

Query: 245  YVAKKSGRNR 254
            Y+AK SGRNR
Sbjct: 1614 YIAKDSGRNR 1623


>gi|218675284|ref|ZP_03524953.1| putative sensory box/GGDEF family protein [Rhizobium etli GR56]
          Length = 355

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 97/184 (52%), Gaps = 18/184 (9%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEK-----LSIVFFDIDYFKQ 141
            + KEL   Y RI+     D L+ L N  AF   L + +N        +++  DID FK+
Sbjct: 164 QVRKELD-EYKRIAN---TDSLTRLSNRRAFDDRLAAVFNNPGMRPVTALLLADIDNFKK 219

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GHPVGDK++A ++  +       +FV R GGEEFA    G++ +E   +A  +R+
Sbjct: 220 INDTYGHPVGDKILATVASVIRSNVRRDVFVARAGGEEFALIIEGNTVEEVTAIAERIRR 279

Query: 202 IIE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +E     NS+  ++ GP   IT S GI    + E    +  + D ALY AK +GRN +V
Sbjct: 280 TLETTPFKNSRTRVNYGP---ITASIGICMASNAEDAGELYSKTDIALYGAKNAGRNCIV 336

Query: 257 CFSD 260
            + D
Sbjct: 337 LYQD 340


>gi|258405249|ref|YP_003197991.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
 gi|257797476|gb|ACV68413.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
          Length = 769

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 92/164 (56%), Gaps = 9/164 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +++ +L+  D L+G+ N   F       + S   Y   LS++ +DID+FK+IND +GH +
Sbjct: 597 SKLRELATRDSLTGVWNRRYFFELAARELESAQRYKHPLSLILYDIDHFKRINDTYGHMI 656

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  L+  +         + R+GGEEFA     +  ++A  +A  + + +  + I  
Sbjct: 657 GDEVLRQLTQLVGANLRNVDLLARVGGEEFAVLLPHTYLEQAHTVARRILRGVNEAVIRT 716

Query: 211 SSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253
            +GP + +TIS G++   H +  + ++I+ ADQALY AK  GRN
Sbjct: 717 EAGP-LQLTISIGMSSSAHADNCLESLIHDADQALYAAKNKGRN 759


>gi|298291182|ref|YP_003693121.1| diguanylate cyclase [Starkeya novella DSM 506]
 gi|296927693|gb|ADH88502.1| diguanylate cyclase [Starkeya novella DSM 506]
          Length = 726

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 84/164 (51%), Gaps = 11/164 (6%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N           ++        LS+V FDID FK+IND+FGH  GDKV+  LS
Sbjct: 561 DPLTGLYNRLRLKDVLPREMARADRTGSALSVVMFDIDRFKRINDSFGHATGDKVLVALS 620

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
                       + R GGEEF      ++  EA I+A  LR+ I N + + +      IT
Sbjct: 621 RVAAGSLRATDHLVRWGGEEFLVVLPDANAAEARIVAEKLRQAIANHRFDEAG----RIT 676

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +S G+A+    E ++ +I RAD+ LY AK +GRNRV     + N
Sbjct: 677 VSFGVAQYAPGEVMADLIARADRTLYQAKANGRNRVEVAPTVLN 720


>gi|307312238|ref|ZP_07591874.1| diguanylate cyclase [Escherichia coli W]
 gi|306907740|gb|EFN38242.1| diguanylate cyclase [Escherichia coli W]
 gi|315059664|gb|ADT73991.1| predicted diguanylate cyclase [Escherichia coli W]
 gi|323379771|gb|ADX52039.1| diguanylate cyclase [Escherichia coli KO11]
          Length = 371

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II +   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPII-VVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DIDYFK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDYFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTPA-ESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367


>gi|34499590|ref|NP_903805.1| hypothetical protein CV_4135 [Chromobacterium violaceum ATCC 12472]
 gi|34105441|gb|AAQ61796.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 585

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 87/167 (52%), Gaps = 16/167 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++QL+R D L+GL N  A    L       G      +++  D+D+FK++ND  GH  G
Sbjct: 418 QLAQLARNDALTGLHNRMAANEQLQEEHLRHGRSGAPYAVLLLDVDHFKRVNDTHGHDAG 477

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++D L        FV R GGEEF      +    AA+LA  +R  +E SQ    
Sbjct: 478 DRVLRHIADILRRAARATDFVARFGGEEFLLLLPETDADGAAVLAEKIRASVEQSQ---- 533

Query: 212 SGPSI-HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
             P +  +T+S G+A       +P    + RADQALY AK +GRNRV
Sbjct: 534 -APDVGRVTLSIGLATVVPADSQP-EMAVKRADQALYRAKAAGRNRV 578


>gi|323699238|ref|ZP_08111150.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio sp. ND132]
 gi|323459170|gb|EGB15035.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           desulfuricans ND132]
          Length = 883

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 60/163 (36%), Positives = 83/163 (50%), Gaps = 11/163 (6%)

Query: 103 LSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           L+  D L+G  N   F + LG+        Y   L+++  DIDYFK IND +GH  GD V
Sbjct: 721 LATTDALTGANNRHQFFA-LGAVEVQRAKRYALPLTVLMLDIDYFKSINDTYGHAAGDLV 779

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  LS  +          GRLGGEEFA     +   E A  A  LR+ +    + +    
Sbjct: 780 LKALSASVSATLRASDIFGRLGGEEFAVILPQTDIDEGAEAAERLRETLAGLAVEVGD-E 838

Query: 215 SIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
           SI  T+S G+   C  +  +  ++ RAD+ALY AK+ GRNRVV
Sbjct: 839 SITFTVSMGVTRICAGDKTVEDVLNRADEALYKAKRMGRNRVV 881


>gi|90023288|ref|YP_529115.1| formamidopyrimidine-DNA glycolase [Saccharophagus degradans 2-40]
 gi|89952888|gb|ABD82903.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 435

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 90/165 (54%), Gaps = 9/165 (5%)

Query: 103 LSRIDCLSGLLNHS----AFISSLGSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           LS  D L+G+ N      ++ + L S N   K+S++  DID+FK+IND  GH +GD+V++
Sbjct: 273 LSTNDALTGIRNRHGVKLSYDAMLQSANPDTKISVILIDIDHFKRINDRRGHQMGDEVLS 332

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             SD L         VGR GGEEF   +  ++  +A +LA  +R  + N+   +     I
Sbjct: 333 QFSDLLRRNTRENDIVGRWGGEEFIVVSAHTNLNQAELLAEKIRTTVSNTA--LGDNKPI 390

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN-RVVCFSD 260
            +TIS G+ E    E +   + RAD+ LY AK+ GRN  V  F+D
Sbjct: 391 MVTISCGVTEIQRPESLDAALARADKCLYSAKRGGRNCTVAQFND 435


>gi|261820424|ref|YP_003258530.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
 gi|261604437|gb|ACX86923.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
          Length = 532

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 90/170 (52%), Gaps = 15/170 (8%)

Query: 97  YNRISQLS---RIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPV 150
           + RI +LS     D L+GLLN      ++    S + +++ +  DID+FK++ND +GH V
Sbjct: 356 HKRIGKLSLQAHTDPLTGLLNRRGIYENVELILSKSNQVAAIVIDIDHFKRVNDTYGHNV 415

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VI  L+D +         + R GGEEF A    +  ++A  +A  LRK +E   + I
Sbjct: 416 GDDVIRLLADNIKQGSRESDLICRTGGEEFLALLPDTDMKQATEIAERLRKKVEKMPLPI 475

Query: 211 SSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVC 257
                 +ITIS G+   C     E I +++  AD ALY AK  GRNRVV 
Sbjct: 476 PE----NITISLGVT--CFTPGTEQIDSVLKTADDALYQAKHEGRNRVVT 519


>gi|78485487|ref|YP_391412.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78363773|gb|ABB41738.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2]
          Length = 532

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 108/208 (51%), Gaps = 20/208 (9%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           L+++L+    L+IIS+   L+  +I   I +   +      ++++ D L+GL N S F  
Sbjct: 337 LQHLLINEFLLLIISL---LVFFFIRNQIRQRRLLH-----KMAKTDNLTGLPNRSIFKR 388

Query: 121 SLGSY----NEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           +L       N+K   LS++FFDID+FK+IND +GH VGDKV+  ++  +           
Sbjct: 389 ALNENIKRSNKKQWPLSLIFFDIDHFKKINDTYGHLVGDKVLKKVARNIEDGLTHKDIFA 448

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEF      +  Q+A  +A  LR+ +E       +   I IT S G+++    +  
Sbjct: 449 RWGGEEFVILLPNTDLQDAEKVAERLRQKLE-----AMTDFDITITSSFGVSDLRPDDTA 503

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDI 261
            + + R D+ LY +K+ GRNRV   S +
Sbjct: 504 ESFMQRGDEMLYRSKEQGRNRVTANSPL 531


>gi|78358127|ref|YP_389576.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78220532|gb|ABB39881.1| diguanylate cyclase (GGDEF domain) [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 361

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 95/174 (54%), Gaps = 12/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L  +++ I +LSR D L+G  N        SA I     Y   LSI+  DID FK IN
Sbjct: 164 EQLKKAFSDIEELSRTDPLTGACNRRKVIEFLSAEIDRSKRYGTPLSILSLDIDRFKAIN 223

Query: 144 DNFGHPVGDK-VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD  +IAF       +  T +F GR GGEEF A    ++ ++A I A  +R+ 
Sbjct: 224 DTYGHAAGDDALIAFCRVCRQQLRKTDLF-GRTGGEEFVAVLPHAACRDAQISAERIRRH 282

Query: 203 IENSQINIS-SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E  QI+I+ +   +  T+S GIA     E   T++ RAD ALY AK +GRN V
Sbjct: 283 VE--QIHITYNNACVRFTVSIGIAVHEAGENTDTLLRRADAALYRAKTAGRNTV 334


>gi|296446213|ref|ZP_06888160.1| diguanylate cyclase [Methylosinus trichosporium OB3b]
 gi|296256250|gb|EFH03330.1| diguanylate cyclase [Methylosinus trichosporium OB3b]
          Length = 734

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 88/174 (50%), Gaps = 13/174 (7%)

Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q +  D L+GL N        ++ ++  G Y + LS+V FD+D+FK IND  GH  GD
Sbjct: 564 LGQQAVTDPLTGLFNRLRIDQALASEMARAGRYGDPLSLVLFDVDFFKAINDAHGHQAGD 623

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  L+D    +      + R GGEEF     GS    A   A  LR  +E     +S 
Sbjct: 624 RALVRLADAARALVRRSDLLARWGGEEFILLTPGSDGAMARNAAEKLRAAVE----RLSF 679

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV--VCFSDIENN 264
                IT S G+ +    +   T++ RAD+ALY+AK +GRNRV  V  SD  +N
Sbjct: 680 EDIGKITCSFGVTQYVDGDTAETMVRRADRALYLAKLNGRNRVESVLESDASSN 733


>gi|149374977|ref|ZP_01892750.1| Putative diguanylate cyclase (GGDEF domain) [Marinobacter algicola
           DG893]
 gi|149360866|gb|EDM49317.1| Putative diguanylate cyclase (GGDEF domain) [Marinobacter algicola
           DG893]
          Length = 309

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 10/172 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I Q S  DCL+G+ N  A   +L         + E+ S++  D+D+FKQ+ND +GH VGD
Sbjct: 140 IEQASLTDCLTGVPNKRALDDALSRASCLGDRHGEEYSLILCDLDHFKQVNDQYGHVVGD 199

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++   + +L         V R GGEEFA     + E  A  + + +R+ I  S I +  
Sbjct: 200 HMLKLAAAELEKAVRNSDSVYRFGGEEFAILLAHTDEVNAREVGDRIREFI--STIVVDC 257

Query: 213 GPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           G + + +T S G+A R   E     + RAD+ALY AK  GRN    F+ I N
Sbjct: 258 GDTNVTVTASCGVAMRLADETADQWLARADEALYRAKAHGRNCTRVFAAISN 309


>gi|85712056|ref|ZP_01043109.1| Phytochrome sensor diguanylate cyclase/phosphodiesterase
           [Idiomarina baltica OS145]
 gi|85694046|gb|EAQ31991.1| Phytochrome sensor diguanylate cyclase/phosphodiesterase
           [Idiomarina baltica OS145]
          Length = 689

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 89/172 (51%), Gaps = 11/172 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           +EL  +  R+  L   D L+ + N      +L         +   L+++  DID+FK++N
Sbjct: 516 QELTEANQRLEHLVHTDALTQVWNRYHMEQTLEEEVKRCKRHGRDLAVILLDIDHFKRVN 575

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D++GH VGDKV+  +S+ +     +    GR GGEEF   A  +  + A  LA  LR+ +
Sbjct: 576 DDYGHDVGDKVLKLISEAIHQWLRSSDVFGRWGGEEFLIIAPETDLESANQLAERLRRRL 635

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            N Q +        +T S G+AE    E  ++++ RAD ALY  K+SGRN V
Sbjct: 636 SNLQFDKVG----QVTASFGVAELLPSEDRNSLVKRADNALYQVKESGRNSV 683


>gi|311105212|ref|YP_003978065.1| diguanylate cyclase [Achromobacter xylosoxidans A8]
 gi|310759901|gb|ADP15350.1| diguanylate cyclase, GGDEF domain protein 6 [Achromobacter
           xylosoxidans A8]
          Length = 484

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 109/206 (52%), Gaps = 15/206 (7%)

Query: 67  ENLSLVIISITISLLLGYISGSIL--KELFISYNRISQLS---RIDCLSGLLNHSAFISS 121
           +  +L II +T +LLL  ++  +L  +E+ +     +QL+   R D L+GL N  AF  +
Sbjct: 276 DRRALFIIPVTTALLLSVVALIVLFRREMALRKAVETQLAIQARTDGLTGLANRRAFDET 335

Query: 122 LG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVG 173
           L      +  E+  LS++F D D+FK+ ND +GH  GD+++  L+  L      P     
Sbjct: 336 LAREWQNARRERVPLSLLFLDADHFKRYNDRYGHQQGDQLLIALARVLKKKARRPRDLAA 395

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--E 231
           R GGEEF      +S Q A  +A  +R+ +   ++      +  +TIS G+A    +  +
Sbjct: 396 RYGGEEFVVLLPNTSRQRAVEIAESIRRTVAGLKVPHEDAAAGIVTISVGVATSVPQADD 455

Query: 232 PISTIIYRADQALYVAKKSGRNRVVC 257
            +++++  AD A+Y AK+SGRNRV  
Sbjct: 456 TLASLVEAADAAVYRAKESGRNRVAV 481


>gi|115523856|ref|YP_780767.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
 gi|115517803|gb|ABJ05787.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
          Length = 366

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 109/212 (51%), Gaps = 23/212 (10%)

Query: 72  VIISITISLLLGYISGSILKELFI-------SYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           +++++   + LG +S S+  +L+        +Y  I +L+ +D L+G  N    +  L  
Sbjct: 146 LVLALGRCMFLGMVSASLRDKLYKRGVELKQAYETIEELAELDELTGSFNRRCIMRVLDD 205

Query: 125 Y-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV---GR 174
                      LSI   D+D+FK+IND +GHP GD+V+   +   + +F     +   GR
Sbjct: 206 EIVHARRIGTPLSIALIDLDWFKRINDVYGHPAGDEVLKTFA---ITIFANIRAIDKFGR 262

Query: 175 LGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
            GGEEF    L ++ Q+AA+ L   LR I+ +   +  S   + +T+SAGIA     E  
Sbjct: 263 YGGEEFLLI-LPATPQDAAVQLLERLRGIVADLDWSAFS-EGMLVTLSAGIATLTENETS 320

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            T++ RAD ALY AK +GRNR+   S   + T
Sbjct: 321 DTLLARADCALYEAKANGRNRIAASSPEASAT 352


>gi|120556685|ref|YP_961036.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120326534|gb|ABM20849.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 361

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 97/193 (50%), Gaps = 24/193 (12%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YN 126
           +S   +++  ++ G +  EL       ++L+  D L+G LN S     L S       Y 
Sbjct: 155 LSCLFAMIFAWLVGRLQAEL-------TRLATTDPLTGCLNRSQLADILNSQIQMRERYE 207

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
              S+V  D+DYFK IND +GH  GDKV+  ++ ++         + R+GGEEF      
Sbjct: 208 RVSSLVLIDLDYFKTINDRWGHLAGDKVLKEMALRVRKRLRESDQLFRIGGEEFMVVLPE 267

Query: 187 SSEQEAAILANDLRKIIENSQINISSGP---SIHITISAGIAERCHKEPISTIIYRADQA 243
           + +++A  LA+ L         +IS+ P    I +T SA +AE    E  S  + RADQA
Sbjct: 268 TRQKDADTLAHQL-------LTSISARPFLDDIRVTASASVAEVTQGETWSVWLNRADQA 320

Query: 244 LYVAKKSGRNRVV 256
           LY AK  GRN+VV
Sbjct: 321 LYEAKSRGRNQVV 333


>gi|229164361|ref|ZP_04292291.1| GGDEF domain protein [Bacillus cereus R309803]
 gi|228619104|gb|EEK76000.1| GGDEF domain protein [Bacillus cereus R309803]
          Length = 351

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 18/205 (8%)

Query: 64  ILVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHSA 117
           IL +++S+V + +  S +  YI+      +L+  ELF     + Q + ID L+GL N   
Sbjct: 148 ILFKDMSIVALYLVCSGVAAYITFISANYVLQSNELF---QTMKQYATIDALTGLGNVRQ 204

Query: 118 FISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           F   +  +       N+ L ++  DID+FK +ND +GHP GD+V+  +   L  +   P 
Sbjct: 205 FDLEMNRHIGNKRMKNDSLCLLLIDIDHFKCVNDTYGHPAGDEVLKQIGSILREISTFPN 264

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
              R GGEEFA             +   +R ++EN    + +G  I IT+S GI+   ++
Sbjct: 265 LAFRKGGEEFALLIPKKGLTYGVSMGEQVRTVVENHPFQLLNGTKIKITVSVGIS--VYE 322

Query: 231 EPISTIIYRADQALYVAKKSGRNRV 255
           E     I  AD ALY +K++GRN+V
Sbjct: 323 ESAEQFIQAADDALYYSKRNGRNQV 347


>gi|294497759|ref|YP_003561459.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium QM
           B1551]
 gi|294347696|gb|ADE68025.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium QM
           B1551]
          Length = 310

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 95/179 (53%), Gaps = 11/179 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +L  +  ++  LS  D L+GL N  +    L           E LS + FDIDYFK  ND
Sbjct: 123 DLRKANKKLEMLSMKDGLTGLNNRRSLDKQLEIEWEYAQKEKEPLSFLLFDIDYFKAYND 182

Query: 145 NFGHPVGDKVIAFLSD-QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD+ +  +++    VVF  P F  R GGEEF      +++ EA  +A  +R+ +
Sbjct: 183 TYGHIQGDECLKEVANIAKSVVFDEPAFFARYGGEEFGILLPRANQYEAIKMAEAIRQQV 242

Query: 204 ENSQ-INISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFS 259
           E    I+ +S     +TIS GI      E  P  +I+++ADQALY AK++GRNR+  +S
Sbjct: 243 EQRGIIHQASDLFKCVTISVGIMTVVPSENIPPISIVHQADQALYEAKRTGRNRISVYS 301


>gi|294142585|ref|YP_003558563.1| GGDEF domain-containing protein [Shewanella violacea DSS12]
 gi|293329054|dbj|BAJ03785.1| GGDEF domain protein [Shewanella violacea DSS12]
          Length = 624

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 103/182 (56%), Gaps = 13/182 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEK----LSIVFFDIDYFKQI 142
           L+EL  +  ++++ + +D L+G+ N +AF   L   G  + +    ++++  DID FK I
Sbjct: 443 LRELNEANQKLTEQATVDSLTGVKNRAAFDKRLLAEGRLSRRQQTPMALLMLDIDRFKSI 502

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           NDN+GH  GD+ +  ++  L      P   V R GGEEFA     + E+ A  +A  +R+
Sbjct: 503 NDNYGHLAGDQALRLIAQTLKEQLKRPGDLVSRYGGEEFAIILPNTGEEGAMQVAELIRQ 562

Query: 202 IIENSQINIS-SGPSIHITISAGI-AERCHKEPIST-IIYRADQALYVAKKSGRNRVVCF 258
            I  S++ IS    SI +TIS G+ AE   ++   T ++ +AD+ALY AK  GRNRV+ +
Sbjct: 563 TI--SELPISWKKHSIPLTISIGVSAEIIERDQDPTKLLEQADKALYRAKNEGRNRVMVY 620

Query: 259 SD 260
           S 
Sbjct: 621 SQ 622


>gi|163748729|ref|ZP_02155982.1| GGDEF domain protein [Shewanella benthica KT99]
 gi|161331839|gb|EDQ02643.1| GGDEF domain protein [Shewanella benthica KT99]
          Length = 621

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 109/205 (53%), Gaps = 19/205 (9%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---G 123
           ENL  ++   T+ L +       L+EL  +  ++++ + ID L+G+ N +AF   L   G
Sbjct: 423 ENLEQMVQERTLELEVA------LRELNEANQKLTEKATIDGLTGVKNRAAFDKRLLAEG 476

Query: 124 SYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGE 178
             + +    ++++  DID FK INDN+GH  GD+ +  ++  L      P   V R GGE
Sbjct: 477 RLSRRQQTPMALLMLDIDNFKSINDNYGHLAGDQTLRLIAQILKEQLKRPGDLVSRFGGE 536

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER---CHKEPIST 235
           EFA     + E+ A  +A  +R+ I    I      SI +TIS G++       ++P + 
Sbjct: 537 EFAIILPNTGEEGAMQVAELIRQTISELSIRWKES-SISLTISIGVSAEIIDTEQDP-TQ 594

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++ +AD+ALY AK  GRNRV+ +++
Sbjct: 595 LLDQADKALYRAKNEGRNRVMVYTE 619


>gi|119945057|ref|YP_942737.1| diguanylate cyclase [Psychromonas ingrahamii 37]
 gi|119863661|gb|ABM03138.1| diguanylate cyclase [Psychromonas ingrahamii 37]
          Length = 543

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 95/174 (54%), Gaps = 12/174 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQ 141
           +LKE  +++    Q++ ID L+ + N ++F +      E       K  I+  DID+FK 
Sbjct: 372 LLKEALLTH----QMATIDHLTQVNNRASFFTYAEKETERSKRRPNKTCIMMIDIDHFKH 427

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH VGDK+++ ++D  +    T     RLGG+EF      +      + A  LR+
Sbjct: 428 INDTYGHDVGDKLLSLVADNCLKCTRTIDVFARLGGDEFTLMMPDTDLVSGRLAAERLRQ 487

Query: 202 IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            I+  Q+ ++    I +T S GI+  + ++ PI T + +AD+ALY+AK  GRN+
Sbjct: 488 RIDELQLELTPDVIIKVTTSIGISVVKLNETPIETALIQADKALYLAKTGGRNQ 541


>gi|315123379|ref|YP_004065385.1| GGDEF domain-containing protein [Pseudoalteromonas sp. SM9913]
 gi|315017139|gb|ADT70476.1| GGDEF domain-containing protein [Pseudoalteromonas sp. SM9913]
          Length = 321

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/176 (36%), Positives = 99/176 (56%), Gaps = 18/176 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPV 150
            R+  L+ +D L+G  N      S+  Y E       +L +   D+D+FKQIND +GH V
Sbjct: 153 KRLKNLALLDPLTGAGNRL----SMSHYFEVEIKDKSQLYLFLIDLDHFKQINDEYGHDV 208

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDKV+  L+    + F    +V R+GGEEF+  +   S Q A   A +LR+ + N  I  
Sbjct: 209 GDKVLVELATLFRITFAKG-YVFRVGGEEFSLMSNFDSAQSALAKAENLRQAVANKYIE- 266

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           ++G +I++T S G+  +  ++ ++ +I +AD+ LY AK +GRN V  FSDI  N C
Sbjct: 267 ANGITINLTASVGVV-KYQQQNLAELIAQADKQLYKAKDAGRNAV--FSDI--NLC 317


>gi|313895135|ref|ZP_07828692.1| diguanylate cyclase (GGDEF) domain protein [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312976030|gb|EFR41488.1| diguanylate cyclase (GGDEF) domain protein [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 599

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 123/261 (47%), Gaps = 23/261 (8%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPF--YGLEYILVEN 68
           +W CH+K      P   + + ++     +  + F   +F +   L PF  Y + + +V  
Sbjct: 317 LWSCHKKGNMYCRP-ILIAFAALSILAVLDGLSFQFRVFAWNTYLLPFGIYTVAFFIVR- 374

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125
             L++        L  +S S+  ++    + +++   +D L+   N + F S++  +   
Sbjct: 375 --LILDRAANERYLSDLSASLESQV----DAVTKRMEVDPLTSCYNRNKFPSAVHDFMRI 428

Query: 126 ----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                E  S++ FDID+FK+IND +GH VGD V+   +  +         + R GGEEF 
Sbjct: 429 ARDTGEPFSLIMFDIDHFKRINDTYGHDVGDVVLVNFARTIKAFLDRRHVLIRWGGEEFI 488

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYR 239
              L     +A   AN +R+ +   +I+    PS  +T SAG+       ++    I+ R
Sbjct: 489 LLCLHYDGAQAQAFANVIREAVSEERIH----PSDQVTCSAGVGVWYGSDEDTADCIVKR 544

Query: 240 ADQALYVAKKSGRNRVVCFSD 260
           AD ALY +K++GRNRV C  D
Sbjct: 545 ADTALYESKQNGRNRVTCEPD 565


>gi|290894265|ref|ZP_06557233.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J2-071]
 gi|290556204|gb|EFD89750.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J2-071]
          Length = 378

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 96/167 (57%), Gaps = 13/167 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q + +D L+GL N   F  +   ++N        LS++  DIDYFK++ND +GH VG+
Sbjct: 205 LQQSTILDPLTGLTNFRHFEKAFEAAFNHATLKKSNLSVIIIDIDYFKRVNDTYGHLVGN 264

Query: 153 KVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            V++  S+ L+ + F     + R+GGEEFA      +  E   LA  +R+ +E   + I 
Sbjct: 265 GVLSTFSEMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPIV 324

Query: 212 SGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  S+ ITISAGIA    R +  P + ++  ADQALY AK++GRN+V
Sbjct: 325 ASGSV-ITISAGIANYDGRNYPNP-NELLNAADQALYNAKRNGRNQV 369


>gi|320529775|ref|ZP_08030853.1| diguanylate cyclase domain protein [Selenomonas artemidis F0399]
 gi|320138014|gb|EFW29918.1| diguanylate cyclase domain protein [Selenomonas artemidis F0399]
          Length = 605

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 123/261 (47%), Gaps = 23/261 (8%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPF--YGLEYILVEN 68
           +W CH+K      P   + + ++     +  + F   +F +   L PF  Y + + +V  
Sbjct: 323 LWSCHKKGNMYCRP-ILIAFAALSILAVLDGLSFQFRVFAWNTYLLPFGIYTVAFFIVR- 380

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125
             L++        L  +S S+  ++    + +++   +D L+   N + F S++  +   
Sbjct: 381 --LILDRAANERYLSDLSASLESQV----DAVTKRMEVDPLTSCYNRNKFPSAVHDFMRI 434

Query: 126 ----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                E  S++ FDID+FK+IND +GH VGD V+   +  +         + R GGEEF 
Sbjct: 435 ARDTGEPFSLIMFDIDHFKRINDTYGHDVGDVVLVNFARTIKAFLDRRHILIRWGGEEFI 494

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYR 239
              L     +A   AN +R+ +   +I+    PS  +T SAG+       ++    I+ R
Sbjct: 495 LLCLHYDGAQAQAFANVIREAVSEERIH----PSDQVTCSAGVGVWYGSDEDTADCIVKR 550

Query: 240 ADQALYVAKKSGRNRVVCFSD 260
           AD ALY +K++GRNRV C  D
Sbjct: 551 ADTALYESKQNGRNRVTCEPD 571


>gi|297537711|ref|YP_003673480.1| response regulator receiver modulated diguanylate cyclase
           [Methylotenera sp. 301]
 gi|297257058|gb|ADI28903.1| response regulator receiver modulated diguanylate cyclase
           [Methylotenera sp. 301]
          Length = 550

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 91/169 (53%), Gaps = 7/169 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPV 150
           +  + + +++D L+GLLNH++  + L +        ++++IV  DID+FK IND +GHPV
Sbjct: 374 FREMQRSTQMDGLTGLLNHASSKTKLAAMLRDLPLGQEMAIVMLDIDHFKSINDAYGHPV 433

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VI  L+  L     +   +GR GGEE+     G    +AA++ + +R+       + 
Sbjct: 434 GDLVIRTLAYLLKGRLRSIDLIGRYGGEEYIVGLPGVDASQAAVIIDKIRQDFARFTHHY 493

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + G  IH T SAG A       +  II  AD AL  AK+ GRNRV  + 
Sbjct: 494 AGG-VIHATFSAGTASYPDLGSVFEIIEAADNALLQAKRLGRNRVEQYQ 541


>gi|42525644|ref|NP_970742.1| GGDEF domain-containing protein [Treponema denticola ATCC 35405]
 gi|41815655|gb|AAS10623.1| GGDEF domain protein [Treponema denticola ATCC 35405]
          Length = 371

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 101/201 (50%), Gaps = 12/201 (5%)

Query: 58  FYGLEYILVENL-SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           F   E  ++EN+ SL  I+I  S LL   +  I+  L + +            + L+ H 
Sbjct: 172 FTDYEKNIIENIASLAAIAINNSQLLEMTTTDIMTHLKLKHY---------FFTLLMEHL 222

Query: 117 AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
             I+S G   E LSI+  DID+FK IND +GH  GD V+  ++  +           R G
Sbjct: 223 YTINSSGEKKETLSILMIDIDFFKNINDTYGHAAGDIVLEEVAKIIKSCTRNADTAARYG 282

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPIST 235
           GEEF      +S   A  +A  +RK +E   I +  G  I++TIS G++      E   +
Sbjct: 283 GEEFIVMLNNTSASAAMAVAERIRKSVEEKSI-MYDGKKINVTISIGVSSYNFDLESAKS 341

Query: 236 IIYRADQALYVAKKSGRNRVV 256
           I+ RAD+ALY +K++GRNRV 
Sbjct: 342 IVERADKALYESKQNGRNRVT 362


>gi|46201308|ref|ZP_00055321.2| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 554

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 86/164 (52%), Gaps = 9/164 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+G+ N   F       +     +   +  +  DID+FK+IND +GHPVGD
Sbjct: 389 LRRLATTDVLTGIFNRRHFMEMARNEVDRARRHGRPMVALMLDIDHFKRINDTYGHPVGD 448

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             I  L+D    +      +GRLGGEEFA     +    A ++A  LR  +   +I    
Sbjct: 449 VAIKALADVCTEIVRHEDVLGRLGGEEFAIVLTETDLDGALLVAERLRLAVAAIRIPAEQ 508

Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
           G  +  T S G+AER   +  I +++ RAD ALY AK+SGRN+V
Sbjct: 509 G-IVAFTTSIGVAERLETDTTIDSMLSRADMALYSAKRSGRNKV 551


>gi|323138821|ref|ZP_08073885.1| response regulator receiver modulated diguanylate cyclase
           [Methylocystis sp. ATCC 49242]
 gi|322395969|gb|EFX98506.1| response regulator receiver modulated diguanylate cyclase
           [Methylocystis sp. ATCC 49242]
          Length = 457

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 88/167 (52%), Gaps = 9/167 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+ +D L+GL N     S L S  E        LS++  DID+FK +ND +GH  GD+V
Sbjct: 290 ELAVVDALTGLNNRRFLESHLASALEHAAHNGRPLSLMILDIDHFKSVNDTYGHDAGDEV 349

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ--INISS 212
           +   + ++  V      V RLGGEEF      +    A  +A  +R  +E  Q  I+ ++
Sbjct: 350 LKVFAQRIKRVVRGADLVCRLGGEEFVVVMPDTPLVVAEKVAERVRAAVEGGQFPIDPAA 409

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +I +T S G+AER        ++ RAD+ALY +K SGRNRV   +
Sbjct: 410 TRTIPVTTSIGLAERGADANADALLRRADKALYGSKASGRNRVTAAA 456


>gi|307294699|ref|ZP_07574541.1| diguanylate cyclase with GAF sensor [Sphingobium chlorophenolicum
           L-1]
 gi|306879173|gb|EFN10391.1| diguanylate cyclase with GAF sensor [Sphingobium chlorophenolicum
           L-1]
          Length = 331

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 94/176 (53%), Gaps = 12/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           L  L +    + +++  D L+G L   AF++ +         +    S++ FDID+FK+I
Sbjct: 149 LAALVVEQLELRRIAERDHLTGALTRRAFLTEMNRAIALFERHERPASLLLFDIDHFKRI 208

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND  GHP GD+VI  ++ +L      P   +GRLGGEEF      ++E++AA  A    +
Sbjct: 209 NDTHGHPAGDQVIRGIA-RLCTGLQRPSDSLGRLGGEEFGILLPETAEEDAARAAQRFCE 267

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256
            I  ++  I   P + +T+S G+AE     P   + +  AD ALY AK+SGRNRV 
Sbjct: 268 AIAAAE--IPGPPPLRVTVSFGVAELRGDWPTGESWLAVADMALYEAKRSGRNRVA 321


>gi|295400309|ref|ZP_06810288.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294977584|gb|EFG53183.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 614

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 96/192 (50%), Gaps = 12/192 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           I  ++ ++    Y  +S+ +  D L+GL NH  F   L           +  ++   D+D
Sbjct: 213 ILSAVFRKFLYLYQEVSERANKDHLTGLYNHGYFKEMLNEQFRDAKKLKQPFTLALLDLD 272

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
            FK+ ND  GH  GDK++ F  + L   V GT     R GGEEFA    G++++EA    
Sbjct: 273 DFKKYNDRNGHLQGDKLLQFFGELLKKAVDGTDFVAARYGGEEFAILMPGTTKEEAFSFL 332

Query: 197 NDLRKIIENSQIN-ISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNR 254
           + LRK I ++  + +   P   ++ S GIAE       S  +I++ADQALY AK  G+N 
Sbjct: 333 DRLRKEINDTYFSGVEHVPYRCLSFSCGIAEMERSMYDSGELIHKADQALYYAKAQGKNN 392

Query: 255 VVCFSDIENNTC 266
           V  +   E+N C
Sbjct: 393 VQIYE--EHNIC 402


>gi|163782280|ref|ZP_02177278.1| hypothetical protein HG1285_05820 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882313|gb|EDP75819.1| hypothetical protein HG1285_05820 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 620

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 104/204 (50%), Gaps = 23/204 (11%)

Query: 74  ISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNH----------SAF 118
           + + + +L+ YI G + +   +  ++     + Q S ID L+GL N           SA 
Sbjct: 413 MDVFVRMLIPYIKGYLQEASPVLESKSLMELLQQQSYIDQLTGLYNRRFLDEIADKLSAQ 472

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           +   G+    L I+  DIDYFKQIND +GH VGD+V+  ++  +        +V R GGE
Sbjct: 473 VKRRGT---SLGILMIDIDYFKQINDKYGHDVGDRVLKEIASIIKSSVREADYVIRFGGE 529

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE---RCHKEPIST 235
           E     +   E  A  +A  +R+ IEN  I IS G  I  T+S G++E    C  +    
Sbjct: 530 EILVLLVDVREGTAKKVAEKIRRAIENKVIEISGG-VIKKTVSIGVSEFPKDCDGKFWQC 588

Query: 236 IIYRADQALYVAKKSGRNRVVCFS 259
           I + AD ALY AK+ GRNRVV F+
Sbjct: 589 IKF-ADVALYRAKEEGRNRVVRFT 611


>gi|312111165|ref|YP_003989481.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Geobacillus sp. Y4.1MC1]
 gi|311216266|gb|ADP74870.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Geobacillus sp. Y4.1MC1]
          Length = 614

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 96/192 (50%), Gaps = 12/192 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           I  ++ ++    Y  +S+ +  D L+GL NH  F   L           +  ++   D+D
Sbjct: 213 ILSAVFRKFLYLYQEVSERANKDHLTGLYNHGYFKEMLNEQFRDAKKLKQPFTLALLDLD 272

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
            FK+ ND  GH  GDK++ F  + L   V GT     R GGEEFA    G++++EA    
Sbjct: 273 DFKKYNDRNGHLQGDKLLQFFGELLKKAVNGTDFVAARYGGEEFAILMPGTTKEEAFSFL 332

Query: 197 NDLRKIIENSQIN-ISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNR 254
           + LRK I ++  + +   P   ++ S GIAE       S  +I++ADQALY AK  G+N 
Sbjct: 333 DRLRKEINDTYFSGVEHVPYRCLSFSCGIAEMERSMYDSGELIHKADQALYYAKAQGKNN 392

Query: 255 VVCFSDIENNTC 266
           V  +   E+N C
Sbjct: 393 VQIYE--EHNIC 402


>gi|145297768|ref|YP_001140609.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850540|gb|ABO88861.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 340

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 91/176 (51%), Gaps = 13/176 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           +KEL  + N   +L+  D L+ LLN  AF   I  L    +  S++  DID FK  ND +
Sbjct: 165 IKELREALNETRKLANEDALTSLLNRRAFDLEIDGLIRSKQTFSLILSDIDRFKNFNDEY 224

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA----AAALGSSEQEAAILANDLRKI 202
           GH +GD+V+   S +L       +   RLGGEEFA       L  S Q    +A  LR+ 
Sbjct: 225 GHLLGDQVLRAFSKRLRETCKEGVTAYRLGGEEFALLVPMRNLALSRQ----MAESLRRA 280

Query: 203 IENSQI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           IE   I +  SG  I HIT S G+ E   +E    ++ R D+ LY AK+ GRNRV+
Sbjct: 281 IEKMSILDRKSGRRIDHITASFGVGEYNGQETGDALVERTDKLLYKAKELGRNRVM 336


>gi|78777843|ref|YP_394158.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78498383|gb|ABB44923.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM
           1251]
          Length = 580

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQIN 143
           EL  +Y ++ QL+  D L+ + N  +F++   S  E+         S++  DID+FK+IN
Sbjct: 410 ELRDAYEKMRQLANTDSLTQINNRFSFLNQFNSLLERYSKESKAEFSLIMIDIDFFKKIN 469

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D++GH VGD VI  ++             GR+GGEEF    L +S + A   A  +RK I
Sbjct: 470 DSYGHHVGDYVIVEVTKLTKACLRESDIFGRVGGEEFMVLLLHTSLEAAKETAQRIRKTI 529

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  +         H T+S G+    +KE  + ++ R D ALY AK  GRNRV
Sbjct: 530 DEYKFEFIG----HATVSIGVISYDNKEKSADMLKRVDIALYEAKNGGRNRV 577


>gi|189423670|ref|YP_001950847.1| diguanylate cyclase with GAF sensor [Geobacter lovleyi SZ]
 gi|189419929|gb|ACD94327.1| diguanylate cyclase with GAF sensor [Geobacter lovleyi SZ]
          Length = 669

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 11/172 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL  +   ++  +RID L+G+ N   F        +    YN  LS++  D+D+FKQIN
Sbjct: 499 QELKHANELLATEARIDFLTGIYNRRMFDGLLVAETARACRYNSPLSLIMLDLDHFKQIN 558

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD V+  +++ +     +     R GGEEF      +   +AA+LA  LR +I
Sbjct: 559 DTQGHAAGDHVLQKVAELISGRIRSHDIFSRWGGEEFVILTPKNDTAQAAVLAEILRDMI 618

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           E  Q +  +G  + +T S G+      EP    I RAD ALY AK +GRNRV
Sbjct: 619 E--QYDFGNG--LRLTCSFGVTRHICGEPAEVFIERADTALYQAKHNGRNRV 666


>gi|313682413|ref|YP_004060151.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313155273|gb|ADR33951.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 549

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 104/218 (47%), Gaps = 23/218 (10%)

Query: 55  LTPFYGLEYILVEN-LSLVIISITI--SLLLGYISGSILK---------ELFISYNRISQ 102
           L PFY L++  + + + + I S T+  S+    + GS  K         E+        +
Sbjct: 330 LWPFYLLDHSDIRHKVQMTIDSQTLFFSIKARRLEGSENKVLVELSDITEVETQKKSFEK 389

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL+N   F       ++S     E LS++ FDID+FK +NDNFGH +GD  +
Sbjct: 390 LAITDKLTGLINRFQFDILCAHTLNSAKRDREPLSLIMFDIDFFKNVNDNFGHNIGDITL 449

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +  +     +     R GGEEF      S   +A  LA DLR  IEN          
Sbjct: 450 RHTAKTIAKRLRSSDIFARWGGEEFMILLPKSGYDDAMKLAEDLRSCIENEVFEAVG--- 506

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            HITIS G+A     +  ++   RAD+ALY+AK  GRN
Sbjct: 507 -HITISFGVAVMEPNDDEASFQQRADKALYMAKNQGRN 543


>gi|94967235|ref|YP_589283.1| diguanylate cyclase [Candidatus Koribacter versatilis Ellin345]
 gi|94549285|gb|ABF39209.1| diguanylate cyclase [Candidatus Koribacter versatilis Ellin345]
          Length = 453

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 97/186 (52%), Gaps = 22/186 (11%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           KEL  +  ++ +LS  D L+GL N   F ++L          N  +S++  D+D FK +N
Sbjct: 267 KELKEAVAKLEELSTRDGLTGLYNRRFFDTTLTAECKRAARANYPISLLIIDVDCFKALN 326

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D++GH VGD  +  +   L   V  T   V R GGEEFA     +SE+ A  +  ++R+ 
Sbjct: 327 DHYGHLVGDDCLQKVGKSLASAVRRTSDVVARYGGEEFALILPNTSEESATTIGENIRRA 386

Query: 203 I---ENSQINISSGPSIHITISAGIAERCHKEPIST---------IIYRADQALYVAKKS 250
           +   E +  N ++GP   +T+S G+  R    P S+         II  AD+ALY AK+ 
Sbjct: 387 VLGLEIANANSTAGP--FVTLSVGVCTRRPSHPRSSEDILVTTNEIIRAADEALYRAKRE 444

Query: 251 GRNRVV 256
           GRNRV+
Sbjct: 445 GRNRVL 450


>gi|91793870|ref|YP_563521.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91715872|gb|ABE55798.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella denitrificans OS217]
          Length = 407

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQI 142
           +  ++K L+   NR       D L+ +     F S     +E+    S+   DID+FK++
Sbjct: 241 AQDMMKMLWEKANR-------DFLTKVFTRRYFFSHYQDEHEEQGCFSLALLDIDFFKKV 293

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH VGD+V+   + +L   FG    V R GGEEF  A  G   ++   L    R+ 
Sbjct: 294 NDTHGHDVGDEVLMVFASRLTEAFGHKFTVARFGGEEFVVAFKGLDIEKTITLMEAFRQH 353

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            E   +  S+G  I +T S G+A     E I  ++ RAD+ALY AK+ GRNR+V
Sbjct: 354 NEQKSVKTSAGELI-VTFSCGLAA-FGDELIDDVLIRADEALYEAKQQGRNRIV 405


>gi|27378152|ref|NP_769681.1| hypothetical protein bll3041 [Bradyrhizobium japonicum USDA 110]
 gi|27351299|dbj|BAC48306.1| bll3041 [Bradyrhizobium japonicum USDA 110]
          Length = 385

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           EL  +Y RI +L+ +D L+G  N    +  L +  +K        +I   D+D+FK+IND
Sbjct: 213 ELKAAYQRIEELAELDELTGSYNRRCIMRLLDAEMDKSRRASTSCAIALIDLDWFKRIND 272

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GHP+GD+V+   +  +          GR GGEEF      +  + A+ +   LR I+ 
Sbjct: 273 AHGHPIGDEVLRTFAITIFANIRPTDCFGRYGGEEFLLLLPDTDGEAASRMLERLRSIVA 332

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   +  S P + +TISAG+      +   T + RAD ALY AK  GRNR+
Sbjct: 333 DLDWSAFS-PGMRVTISAGVVTLRDVDTADTFLARADSALYSAKAQGRNRI 382


>gi|91224261|ref|ZP_01259524.1| GGDEF family protein [Vibrio alginolyticus 12G01]
 gi|269965490|ref|ZP_06179608.1| GGDEF family protein [Vibrio alginolyticus 40B]
 gi|91191172|gb|EAS77438.1| GGDEF family protein [Vibrio alginolyticus 12G01]
 gi|269829853|gb|EEZ84084.1| GGDEF family protein [Vibrio alginolyticus 40B]
          Length = 337

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 92/162 (56%), Gaps = 5/162 (3%)

Query: 100 ISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           + Q +  D LS L N  AF   +SSL + N+ ++++  DID+FK  NDN+GH  GD V+ 
Sbjct: 174 VQQDALFDGLSNLYNRRAFDKDLSSLIASNQAMTLIMLDIDHFKSFNDNYGHLFGDTVLK 233

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPS 215
            ++ +L       +   R GGEEFA      S + A   A+ LR++IE  +I +  SG  
Sbjct: 234 AIARRLQQSCRDGICAYRFGGEEFALIVPNKSLRIARQYADTLRRMIEKLRIRDKRSGTQ 293

Query: 216 IH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +H IT S G+AE    +    +I +AD+ LY AK+ GRNRV+
Sbjct: 294 VHSITASFGVAEFEPGDTPEALINKADKQLYEAKQLGRNRVM 335


>gi|296100762|ref|YP_003610908.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295055221|gb|ADF59959.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 415

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 99/182 (54%), Gaps = 14/182 (7%)

Query: 84  YIS-GSILKELFISYNRISQLSRIDCLSGLLNHS---AFISSLGSY----NEKLSIVFFD 135
           Y+S G  + E       + + + +D L+GL N +   A +S   S+     E +S++  D
Sbjct: 237 YVSVGKDVTERLREEQALRESATVDQLTGLFNRNHGKALLSEAYSFTLSREEPMSLILCD 296

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FKQIND+FGHPVGD+++A +S  L         V R GGEEF       ++  AA L
Sbjct: 297 IDHFKQINDSFGHPVGDQILAQVSGLLRKSVRGNDRVIRWGGEEFLILLENCTDMVAAEL 356

Query: 196 ANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  LR  I + Q  N+       +T+S G+A    KE +  +I R D+ALY +K++GRN+
Sbjct: 357 AERLRLRIASEQFQNVG-----KVTVSLGVASLFQKESLEQLISRCDEALYKSKRNGRNQ 411

Query: 255 VV 256
           + 
Sbjct: 412 LT 413


>gi|226224515|ref|YP_002758622.1| GGDEF domain protein [Listeria monocytogenes Clip81459]
 gi|225876977|emb|CAS05686.1| GGDEF domain protein [Listeria monocytogenes serotype 4b str. CLIP
           80459]
          Length = 378

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 13/167 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q + +D L+GL N   F  +   ++N        LS++  DIDYFK++ND +GH VG+
Sbjct: 205 LQQSTILDPLTGLTNFRHFEKAFEAAFNHATLKKSNLSVIIIDIDYFKRVNDTYGHLVGN 264

Query: 153 KVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            V++  S  L+ + F     + R+GGEEFA      +  E   LA  +R+ +E   + I 
Sbjct: 265 GVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPIV 324

Query: 212 SGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  S+ ITISAGIA    R +  P + ++  ADQALY AK++GRN+V
Sbjct: 325 ASSSV-ITISAGIANYDGRNYPNP-NELLNAADQALYNAKRNGRNQV 369


>gi|330957430|gb|EGH57690.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 219

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 95/180 (52%), Gaps = 18/180 (10%)

Query: 88  SILKELFISYNRISQL---SRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDID 137
           SI  ++     R  QL   +  D L+GL N  A        I++        S++  DID
Sbjct: 42  SISPDVTTRMGREQQLLEFAHSDPLTGLDNRRAAEHTLERLINTTRVSGRPFSLIICDID 101

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF--VGRLGGEEFAAAALGSSEQEAAIL 195
           +FKQ+ND +GHP GD V+  ++D  ++     MF    R GGEEF      SS  +AA L
Sbjct: 102 HFKQVNDLYGHPAGDSVLKSVAD--ILKHQVRMFDVAARWGGEEFLVLVADSSLNQAAEL 159

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A  LRK + + ++  +      ITIS G+AE    E  +++I RAD+ALY AK+ GRNRV
Sbjct: 160 AERLRKGVASLELTETGS----ITISLGVAELESGETAASLIQRADKALYQAKRLGRNRV 215


>gi|89092332|ref|ZP_01165286.1| histidine kinase [Oceanospirillum sp. MED92]
 gi|89083420|gb|EAR62638.1| histidine kinase [Oceanospirillum sp. MED92]
          Length = 619

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 81/161 (50%), Gaps = 14/161 (8%)

Query: 107 DCLSGLLNHSAFISSLGSYNE---------KLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           D L+GLLN   F  S+    E          L+I   DIDYFK+IND   H VGD V+  
Sbjct: 458 DPLTGLLNRRGF--SIAGNKEWQYHLRTRNPLTIAMIDIDYFKRINDEHSHSVGDDVLVE 515

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           L+  L         V R+GGEEF A  L     EA I    LR++IE+S +  S+   IH
Sbjct: 516 LARHLTEHMRQSDLVARIGGEEF-ALILNQPLPEAEIGLERLRELIEHSPVT-SADEQIH 573

Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
            TIS G  E C +   +   +  AD  LY AK+ GRNRVV 
Sbjct: 574 YTISIGAVEACRRFISLEAALDAADNNLYAAKRRGRNRVVS 614


>gi|309783283|ref|ZP_07677995.1| YaiC/YhcK/ArdA family protein [Ralstonia sp. 5_7_47FAA]
 gi|308917952|gb|EFP63637.1| YaiC/YhcK/ArdA family protein [Ralstonia sp. 5_7_47FAA]
          Length = 364

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 122/258 (47%), Gaps = 35/258 (13%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGL---------------TPFYGLEYILVENLSLV 72
           +++F++  S+ + T+  +  I     GL               T   GL +    ++ ++
Sbjct: 100 LMHFNLLPSVMLLTLTMVDKITTGIRGLWVRALWVMLAAGVASTAVMGLHWAPETSMRVI 159

Query: 73  IISITI----SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS-------AFISS 121
           +  + +    +L +  +S  ++++       + +L R+D L+GL           A +  
Sbjct: 160 VACLPVMSLHTLSVSAVSYQLIRQSARQNQMLDELRRVDALTGLFGRGHWQEQAEAALRR 219

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF---VGRLGGE 178
             + +E   ++  DID+FK+IND +GH VGD+VI  L+    VV G        GR GG+
Sbjct: 220 HHTTDEPACMLMLDIDHFKEINDAYGHTVGDEVIRALAH---VVRGNVRAGDCAGRYGGD 276

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTII 237
           EFA    G   ++A  +A  +R+  E   + + S P + IT S G+A   H+   +   I
Sbjct: 277 EFAIVLPGMHARDALAIAQRIREQTEG--VRLRSLPELRITSSIGVAPADHRHSSLRAWI 334

Query: 238 YRADQALYVAKKSGRNRV 255
             AD ALYVAK  GRN+V
Sbjct: 335 DAADAALYVAKNGGRNQV 352


>gi|83647423|ref|YP_435858.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83635466|gb|ABC31433.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 313

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 88/165 (53%), Gaps = 11/165 (6%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N  AF       +S    Y  KLS++FFDID+FK++ND +GH  GD ++  L+
Sbjct: 143 DSLTGVANKRAFDYQLHREVSLATRYKYKLSMLFFDIDHFKKVNDTYGHAAGDALLQQLA 202

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSGPSIHI 218
             +           R GGEEF A  L  +E E A  +A  LR+ + N+      G +I  
Sbjct: 203 KVVQDNCRDSDLCFRFGGEEF-AMLLAKTETEGAYAIAERLREAVANTAFQ-HEGHTISF 260

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV-VCFSDIE 262
           TIS G+A    +E  S  + RADQALY AK +GRN+  +   D E
Sbjct: 261 TISIGVATYDGEENRSDFLERADQALYDAKHAGRNKTKIAHQDQE 305


>gi|75675850|ref|YP_318271.1| diguanylate cyclase [Nitrobacter winogradskyi Nb-255]
 gi|74420720|gb|ABA04919.1| diguanylate cyclase [Nitrobacter winogradskyi Nb-255]
          Length = 354

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 90/176 (51%), Gaps = 9/176 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
           S   I   S  D L+GL N   F  ++        S  E LS++ FDID+FK  NDN+GH
Sbjct: 169 SLEAIRAESMTDPLTGLGNRKYFDRAVADAVALAMSEGEPLSLLMFDIDHFKSFNDNYGH 228

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+V+  ++  L           R GGEEFA     ++ ++A  +A+ +R+ +   ++
Sbjct: 229 LTGDQVLRLVAMSLKQNIKGQDITARYGGEEFAVVLPSTALKQALTVADHIRRAVMAKEL 288

Query: 209 NISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              S   I   +TIS G++     +   +++ RAD  LY AK+ GRNR +C +D E
Sbjct: 289 KKKSTGEILGRVTISIGVSMLRPGDTPDSLMERADACLYAAKRGGRNRAICETDPE 344


>gi|16765323|ref|NP_460938.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167993561|ref|ZP_02574655.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|20140631|sp|Q8ZNT5|YEDQ_SALTY RecName: Full=Cellulose synthesis regulatory protein
 gi|16420521|gb|AAL20897.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|205328369|gb|EDZ15133.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|267993975|gb|ACY88860.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158500|emb|CBW18010.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912976|dbj|BAJ36950.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224631|gb|EFX49694.1| hypothetical protein SEE_03090 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323130265|gb|ADX17695.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988875|gb|AEF07858.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 570

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 20/206 (9%)

Query: 74  ISITISLLLGYISGSIL----------KELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           ISI ++LL G  +  +L          K +F+  N +   +  D L+ L N  A      
Sbjct: 358 ISIALTLLWGLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKAS 417

Query: 124 S----YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                Y E     S++  D+DYFK +ND FGH  GD+V++  +  +          GR+G
Sbjct: 418 RLAKRYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVG 477

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPIS 234
           GEEF     G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE        
Sbjct: 478 GEEFCIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFE 537

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSD 260
            +   AD+ LY AK+SGRNR +C SD
Sbjct: 538 QLQSLADKRLYYAKQSGRNR-ICASD 562


>gi|325971350|ref|YP_004247541.1| diguanylate cyclase [Spirochaeta sp. Buddy]
 gi|324026588|gb|ADY13347.1| diguanylate cyclase [Spirochaeta sp. Buddy]
          Length = 340

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 99/184 (53%), Gaps = 13/184 (7%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVF 133
           LL  I+  ++K      N++ + S  D L+GL N   F  +L        S N  L I+ 
Sbjct: 158 LLSTIANHLIKT---QINQLQESSIRDHLTGLFNRRYFEETLKNKLKRVQSVNYSLGILL 214

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+DYFK+ ND +GH  GD V+  LS+ ++  F   + + R GG+EFA     + ++E  
Sbjct: 215 LDVDYFKRFNDTYGHDAGDAVLIELSNIMLHHFDISISICRYGGDEFAILLPKTQKEELM 274

Query: 194 ILANDLRKIIENSQINISSGPSI-HITISAGIAERCH-KEPISTIIYRADQALYVAKKSG 251
           +LA  L K + N  + +  G S+  +TIS G A   H  E I+  I RADQALY AK+ G
Sbjct: 275 LLAETLVKKVRN-HVVMYKGKSLGSMTISCGCAIYNHTTEDITEFIKRADQALYQAKEKG 333

Query: 252 RNRV 255
           +++V
Sbjct: 334 KDQV 337


>gi|89093140|ref|ZP_01166090.1| hypothetical protein MED92_03647 [Oceanospirillum sp. MED92]
 gi|89082436|gb|EAR61658.1| hypothetical protein MED92_03647 [Oceanospirillum sp. MED92]
          Length = 610

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 7/163 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++++  D L+G LN  A  S+             KL +   D+DYFK+IND FGH VGD
Sbjct: 446 LTEMASHDPLTGCLNRRALFSAAREELRRASRSGSKLCVCLMDLDYFKRINDRFGHQVGD 505

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+   S  +          GR+GGEEFA   +GS  + A  +A  +R  +    +    
Sbjct: 506 NVLREFSSVVNSCLRVEDKFGRIGGEEFAVLLIGSGLESAVEVAERIRMEVMKIALQGIE 565

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              + +T+S G++E    EP    + RAD+ +Y AK  GRN+V
Sbjct: 566 HEDLEVTVSIGVSEWAEVEPFEQALSRADEKMYKAKNMGRNQV 608


>gi|152995952|ref|YP_001340787.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150836876|gb|ABR70852.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 365

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 97/183 (53%), Gaps = 8/183 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVF--FDIDYFKQ 141
           ++K L    + +  L+ +D L+GL N    ++        S   + S VF   D+D+FK+
Sbjct: 183 VIKRLKSVNSHLRTLAEMDELTGLSNRRKVLADAVNIFADSVINRESCVFAIVDLDHFKK 242

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH  GD V+A +S  +  V  +   +GR GGEEF      +S ++A ++   +R+
Sbjct: 243 INDTFGHEAGDLVLAKVSAMMASVIRSQDEIGRYGGEEFIVIMPDTSLKDAEVVMERMRQ 302

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +EN  I    G  I +T+S G+A           I+ +AD+ LY AK++GRNRV   SD
Sbjct: 303 SVENMLIETEHGIVIPVTVSIGVAAIAPSVSRYEEILAQADKGLYTAKRNGRNRVSVQSD 362

Query: 261 IEN 263
            ++
Sbjct: 363 YQS 365


>gi|78485721|ref|YP_391646.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78364007|gb|ABB41972.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2]
          Length = 411

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 85/164 (51%), Gaps = 8/164 (4%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+GL    A + S      K SI   DID+FK  ND +GH VGD V+  ++ +L ++ 
Sbjct: 235 DQLTGLNGRRALLESFLGLGRKYSIAMMDIDHFKSFNDTYGHDVGDAVLRTVAYELSLIS 294

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIH--ITISAG 223
              ++  R GGEEF     G   Q+       +R  IEN  + +   G  +   +T+S G
Sbjct: 295 TGQVY--RYGGEEFTVVFKGKQAQQVKPALEAVRYAIENRVLEVEKQGQPVETKVTVSFG 352

Query: 224 IAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           +AER    K+P   ++  AD+ALY AKKSGRNR+V   +    T
Sbjct: 353 LAERNDQFKKP-EEVMKAADEALYQAKKSGRNRIVVEGESPKTT 395


>gi|56413101|ref|YP_150176.1| hypothetical protein SPA0883 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197362027|ref|YP_002141664.1| hypothetical protein SSPA0823 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|81361581|sp|Q5PLI4|YEDQ_SALPA RecName: Full=Cellulose synthesis regulatory protein
 gi|56127358|gb|AAV76864.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093504|emb|CAR58965.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 570

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 103/202 (50%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+ +  T  LL+ + +   I+K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWVLFTAMLLISWGVIRHIVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 -YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            Y E     S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY AK+SGRNR +C SD
Sbjct: 542 LADKRLYYAKQSGRNR-ICASD 562


>gi|94312478|ref|YP_585688.1| diguanylate cyclase [Cupriavidus metallidurans CH34]
 gi|93356330|gb|ABF10419.1| conserved hypothetical protein (contains GGDEF domain) [Cupriavidus
           metallidurans CH34]
          Length = 587

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 25/225 (11%)

Query: 59  YGLEYILVENLSLVIISITISL-LLGYISGSILKELFISY----NRISQLSRIDCLSGLL 113
           Y +   +   LSL +++I   L +L Y++  ++  LF  Y     ++ Q++  D L+ L 
Sbjct: 348 YDVYATVARRLSLPLLTIWFLLPVLMYVTLRVVTLLFDHYLAAGRKLQQMAETDPLTQLA 407

Query: 114 NHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N   F         +       L+++  DIDYFK++ND +GH  GD V+  ++D +    
Sbjct: 408 NRRRFSEQFKKETARRQRDGTPLAMLMLDIDYFKRVNDKWGHASGDCVLMAMADLMRKHL 467

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR---------KIIENSQINISSGPSIH 217
               F  RLGGEEFA    G+S  EA   A  LR            +  Q +   G  I 
Sbjct: 468 REIDFPARLGGEEFAVLLPGASSDEAVAAAERLRLAVEAAFVEAAPDAPQPDTGDG-RIR 526

Query: 218 ITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            T+S G+AE      + +  ++  AD+ LYVAK++GRNR VC +D
Sbjct: 527 FTVSIGVAEAGTDGCQTLDAMLAVADRRLYVAKEAGRNR-VCATD 570


>gi|47093828|ref|ZP_00231573.1| GGDEF domain protein [Listeria monocytogenes str. 4b H7858]
 gi|47017795|gb|EAL08583.1| GGDEF domain protein [Listeria monocytogenes str. 4b H7858]
          Length = 378

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 13/167 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q + +D L+GL N   F  +   ++N        LS++  DIDYFK++ND +GH VG+
Sbjct: 205 LQQSTILDPLTGLTNFRHFEKAFEAAFNHATLKKSNLSVIIIDIDYFKRVNDTYGHLVGN 264

Query: 153 KVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            V++  S  L+ + F     + R+GGEEFA      +  E   LA  +R+ +E   + I 
Sbjct: 265 GVLSTFSQMLLKISFPPNTLISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPIV 324

Query: 212 SGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  S+ ITISAGIA    R +  P + ++  ADQALY AK++GRN+V
Sbjct: 325 ASGSV-ITISAGIANYDGRNYPNP-NELLNAADQALYNAKRNGRNQV 369


>gi|261247152|emb|CBG24975.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
          Length = 570

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 20/206 (9%)

Query: 74  ISITISLLLGYISGSIL----------KELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           ISI ++LL G  +  +L          K +F+  N +   +  D L+ L N  A      
Sbjct: 358 ISIALTLLWGLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKAS 417

Query: 124 S----YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                Y E     S++  D+DYFK +ND FGH  GD+V++  +  +          GR+G
Sbjct: 418 RLAKRYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVG 477

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPIS 234
           GEEF     G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE        
Sbjct: 478 GEEFCIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFE 537

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSD 260
            +   AD+ LY AK+SGRNR +C SD
Sbjct: 538 QLQSLADKRLYYAKQSGRNR-ICASD 562


>gi|226939634|ref|YP_002794707.1| Sensor protein [Laribacter hongkongensis HLHK9]
 gi|226714560|gb|ACO73698.1| Sensor protein [Laribacter hongkongensis HLHK9]
          Length = 379

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 90/173 (52%), Gaps = 10/173 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFG 147
           EL  + N++   +  D L+ LLN  A +  L       ++ L+++  DID+FK +ND  G
Sbjct: 206 ELLQAKNQLEVRATYDPLTQLLNRGAILEGLSQSCCDPSQPLAVILADIDHFKNVNDVHG 265

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD  +  ++ +L  V      VGR GGEEF     G++   A I+A  LR+ +    
Sbjct: 266 HQAGDMALEAVARRLGRVLRGGDAVGRYGGEEFLIVLPGATPDVAMIVAERLRQAVAGEP 325

Query: 208 INISSGPSIHITISAGIAERCHK----EPISTIIYRADQALYVAKKSGRNRVV 256
           +++  G S  +T+S G+   C        ++ +I  ADQALY AK  GRN+V+
Sbjct: 326 VDLGGGRSQSLTLSLGVC--CQPGGQAHDVACLIAEADQALYAAKAGGRNQVM 376


>gi|313682575|ref|YP_004060313.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313155435|gb|ADR34113.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 652

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 97/205 (47%), Gaps = 17/205 (8%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLS 110
           F + + PF    YIL    S   IS T+   +     +    L  +YNR    S      
Sbjct: 458 FTLSIAPFDDQRYIL----SFSDISSTMQDFIDLGQKATHDPLTGAYNRTFLES------ 507

Query: 111 GLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
              N+   +  +G + ++L ++ FDIDYFK++ND +GH  GD V+ +  + L        
Sbjct: 508 ---NYDRIVQKIGYHQKELCVMMFDIDYFKKVNDTYGHNRGDNVLKYFVNVLNESIRNED 564

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            + R GGEEF       S+++A  +A  LR  IE +          HIT S G+     +
Sbjct: 565 VLIRWGGEEFILLLAVESDEQALKVAEHLRHTIETAYFEEVE----HITCSIGVTLHNFE 620

Query: 231 EPISTIIYRADQALYVAKKSGRNRV 255
           E I   I RAD+ALY AK SGRNRV
Sbjct: 621 EKIMQTIKRADEALYKAKSSGRNRV 645


>gi|126652687|ref|ZP_01724848.1| hypothetical protein BB14905_23013 [Bacillus sp. B14905]
 gi|126590536|gb|EAZ84654.1| hypothetical protein BB14905_23013 [Bacillus sp. B14905]
          Length = 325

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 102 QLSRIDCLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
           +LS  D L+GL N   F       L SY E     S+   DID+FK++ND FGH VGD V
Sbjct: 163 ELSETDKLTGLKNRRFFQDKLEQQLNSYYESAKPFSLCILDIDHFKKVNDTFGHQVGDDV 222

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +A L+  L         V R GGEEF      +    A  L   +RK      + +   P
Sbjct: 223 LAQLAQLLTQRARKEDTVARYGGEEFVMILPETEIAAAKELGEQIRKT-----VALDHWP 277

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +  +TIS G+A    ++  +T++  AD ALY +KK+GRN+V  F D++
Sbjct: 278 AGQVTISIGMATVTSEDTGTTLLKNADDALYASKKNGRNQVTHFFDMK 325


>gi|330504379|ref|YP_004381248.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328918665|gb|AEB59496.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 349

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 102/200 (51%), Gaps = 15/200 (7%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           ++ NL L  +++ I   + Y    IL E      R+++ +  D L+GL N          
Sbjct: 144 IIANLGLASLAVMIFAHI-YERSRILNE-----KRLTEQATTDALTGLPNRLKLAEVFER 197

Query: 125 YNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                      LS+VF DID+FKQIND FGH +GD+ +A  +  L           RLGG
Sbjct: 198 ERAHALRNGTSLSLVFLDIDHFKQINDRFGHEIGDRALAHFATVLAQRLRINDLFCRLGG 257

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTI 236
           EEFA    GS+ ++A  +A  LR+ +  + +      ++ +T+SAG+A  +   + +  +
Sbjct: 258 EEFAVLLPGSTAEQARDIAESLRERLAAAPLAFDD-IALPMTLSAGVASFKADGQSLHEL 316

Query: 237 IYRADQALYVAKKSGRNRVV 256
           +  AD+  Y AK++GRNRV+
Sbjct: 317 MLAADRRTYAAKRAGRNRVI 336


>gi|261341470|ref|ZP_05969328.1| putative membrane protein [Enterobacter cancerogenus ATCC 35316]
 gi|288316264|gb|EFC55202.1| putative membrane protein [Enterobacter cancerogenus ATCC 35316]
          Length = 472

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 98/184 (53%), Gaps = 11/184 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLS---IVFFDID 137
           G  + E   +  R++  +  D L+G LN SA +  L       S ++  S   ++ FD+D
Sbjct: 288 GLDITERKKAEQRLAVKATTDDLTGCLNRSAILHQLKMALAVNSRHDPRSHFCVLMFDLD 347

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           YFKQIND +GH VGD  +    D +  +      +GR+GGEEF       + + A  L+ 
Sbjct: 348 YFKQINDGWGHQVGDAALRHFCDCIRALSPADSLLGRVGGEEFLLLLARGNGEAATRLSA 407

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            LR ++ +  + + +  S+ ++ SAG+ E C  +   S ++ RAD+ALY AK++GR + V
Sbjct: 408 RLRTMLSSKPLQVGN-KSLVLSFSAGVVEVCLGQRDSSALLTRADKALYDAKRTGRGKTV 466

Query: 257 CFSD 260
             SD
Sbjct: 467 VASD 470


>gi|289651656|ref|ZP_06482999.1| GGDEF [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 358

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 115/223 (51%), Gaps = 20/223 (8%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L P   L   + +  + + + +   + +G++S  +  +L+   N + ++SR D L+GLLN
Sbjct: 135 LNPAVNLHGNMAQIYACLPVLVIYPIFIGWMSHQVTLKLWEHRNILRKISRTDSLTGLLN 194

Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
           H A+   L        + +++  I   DID+FK IND +GH +GD V+  +S+ L+    
Sbjct: 195 HGAWKDLLDLEYVKSQNQHQQCVIALIDIDHFKVINDTYGHLMGDTVLQNISEALMENLR 254

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-----SSGPSIHITISA 222
               +GR GG+EF      +   +A       R+I+E +++ I     S    + +++S 
Sbjct: 255 DSDLIGRCGGDEFCVILPDTRLFQA-------REILERTRLAIDEMSYSLQRDLKVSLSI 307

Query: 223 GIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           GIA    + P  S+ ++ AD+ALY+AK +GRN V    D+ + 
Sbjct: 308 GIAAYSPELPDASSWLHEADKALYLAKSTGRNCVASAQDMPSE 350


>gi|261420041|ref|YP_003253723.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Geobacillus sp. Y412MC61]
 gi|319766855|ref|YP_004132356.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Geobacillus sp. Y412MC52]
 gi|261376498|gb|ACX79241.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Geobacillus sp. Y412MC61]
 gi|317111721|gb|ADU94213.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Geobacillus sp. Y412MC52]
          Length = 608

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 120/260 (46%), Gaps = 31/260 (11%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY---ILVENLSLVIISITISLLLGY--- 84
           F    S+ +  +I I+ IF+F++ L   Y   +   +L E +    +++ +SL+L     
Sbjct: 141 FPYMVSLLVYFLINISLIFMFFVFLERVYKGAFNFGVLFEAMVSYCVTLILSLVLAILLD 200

Query: 85  ---------------ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---- 125
                          I   + ++  + Y  +S  +  D L+GL NH  F  +L       
Sbjct: 201 KERYFGLFLFTVLVIILSVVFRKFIVLYELVSNRANKDHLTGLYNHGFFKETLKEQFSDC 260

Query: 126 ---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFA 181
               + L++ F D+D FK+ ND  GH  GD+++ F    L   V GT   V R GGEEFA
Sbjct: 261 KLLKQPLTLAFLDLDDFKKYNDRNGHLQGDRLLTFFGKLLQKAVEGTNFTVARYGGEEFA 320

Query: 182 AAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAE-RCHKEPISTIIYR 239
                +++++A    N LRK + ++    +   P   ++ S GIAE          +I+R
Sbjct: 321 ILMPNTTKEDAYAFLNRLRKEVNDTYFEGVEHIPYRCLSFSCGIAEMEKDMHESDELIHR 380

Query: 240 ADQALYVAKKSGRNRVVCFS 259
           ADQALY AK  G+N V  + 
Sbjct: 381 ADQALYYAKAQGKNNVQLYD 400


>gi|222832502|gb|EEE70979.1| predicted protein [Populus trichocarpa]
          Length = 268

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 25/225 (11%)

Query: 59  YGLEYILVENLSLVIISITISL-LLGYISGSILKELFISY----NRISQLSRIDCLSGLL 113
           Y +   +   LSL +++I   L +L Y++  ++  LF  Y     ++ Q++  D L+ L 
Sbjct: 29  YDVYATVARRLSLPLLTIWFLLPVLMYVTLRVVTLLFDHYLAAGRKLQQMAETDPLTQLA 88

Query: 114 NHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N   F         +       L+++  DIDYFK++ND +GH  GD V+  ++D +    
Sbjct: 89  NRRRFSEQFKKETARRQRDGTPLAMLMLDIDYFKRVNDKWGHASGDCVLMAMADLMRKHL 148

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR---------KIIENSQINISSGPSIH 217
               F  RLGGEEFA    G+S  EA   A  LR            +  Q +   G  I 
Sbjct: 149 REIDFPARLGGEEFAVLLPGASSDEAVAAAERLRLAVEAAFVEAAPDAPQPDTGDG-RIR 207

Query: 218 ITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            T+S G+AE      + +  ++  AD+ LYVAK++GRNR VC +D
Sbjct: 208 FTVSIGVAEAGTDGCQTLDAMLAVADRRLYVAKEAGRNR-VCATD 251


>gi|254508382|ref|ZP_05120503.1| hypothetical protein VPMS16_744 [Vibrio parahaemolyticus 16]
 gi|219548695|gb|EED25699.1| hypothetical protein VPMS16_744 [Vibrio parahaemolyticus 16]
          Length = 596

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 4/163 (2%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGDKVI 155
           ++++L+R D L+G+LN  A +          S   I   D+D+FKQIND  GH VGD V+
Sbjct: 433 QLTRLAREDPLTGVLNRRALVDGAEEIRRLASSCYICMMDLDHFKQINDQCGHSVGDDVL 492

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-NSQINISSGP 214
               D +          GRLGGEEFA     ++ +EAA +A  +R  +E +    + S  
Sbjct: 493 VAFCDAVAKETRESDMFGRLGGEEFALLLPNTTLREAAQIAERIRVRVECDLAEKLCSSH 552

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++ +T+S G+    +++  + ++  AD+ LY AK+SGRN++V 
Sbjct: 553 TLPVTVSMGLVSWPNEKAFTQVLDHADKLLYKAKQSGRNQIVA 595


>gi|85859312|ref|YP_461514.1| PAS sensory box/GGDEF family protein [Syntrophus aciditrophicus SB]
 gi|85722403|gb|ABC77346.1| PAS sensory box/GGDEF family protein [Syntrophus aciditrophicus SB]
          Length = 300

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 71/124 (57%), Gaps = 1/124 (0%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            I+F DID+FK+ ND +GH VGD V+ F++D LV        +GR GGEEF       + 
Sbjct: 173 GILFMDIDHFKEFNDTYGHDVGDLVLRFVADTLVKNARPSDLIGRWGGEEFIGILRNVTH 232

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           +   IL N LR +IEN+ I + +   +H++IS G       +   T++ RAD  LY +K+
Sbjct: 233 ENLEILGNRLRVLIENAYITLKT-EQLHVSISVGATLMLDNDSSDTLLKRADMLLYESKR 291

Query: 250 SGRN 253
            GRN
Sbjct: 292 RGRN 295


>gi|313682082|ref|YP_004059820.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313154942|gb|ADR33620.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 307

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/176 (36%), Positives = 87/176 (49%), Gaps = 8/176 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFF--DIDYFK 140
           S + EL    N    L  ID L+ + N    I  L +      N+ LSI+    D D FK
Sbjct: 130 SKIDELSTELNETVSLLTIDPLTKVTNRKGLIDDLNNALQIGKNKALSIILLMIDADDFK 189

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH  GD+V+ F +  +  V      V R GGEEF      S +++A  LA+ +R
Sbjct: 190 LINDQHGHLAGDRVLYFFAQSIKSVIRPGDKVYRYGGEEFTVVLHQSDKEQAYSLADKIR 249

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             IE SQ+ I SG +I +T+S G       +     + RAD ALY AKK G+NR +
Sbjct: 250 SKIEQSQL-IYSGKTIKMTVSVGATVHHQGDSYDDFVGRADDALYRAKKEGKNRTI 304


>gi|241761861|ref|ZP_04759947.1| diguanylate cyclase [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241373775|gb|EER63335.1| diguanylate cyclase [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 318

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 95/190 (50%), Gaps = 9/190 (4%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSY 125
           +IS  I  L   I+   L EL  +  R+ +L+  D L+GLLN  AF        +     
Sbjct: 129 LISNQIRKLRLMITNKTL-ELQETNLRLKELANTDELTGLLNRRAFTEMFEKNCAQFSKT 187

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            ++ S+   DID+FK+INDN GH  GD VI +++ ++        F  R GGEEF     
Sbjct: 188 KDQFSVFILDIDFFKKINDNEGHLAGDAVIQYIAQKITENIRQQDFAARYGGEEFVIMLP 247

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            +  +    +A+ +   I    +    G  I +T+S G+A     +  ++++ RAD+ LY
Sbjct: 248 NADMETTCQVASRIGNAISEKPVPY-QGREIPVTVSIGVAVMKENDDANSLLERADERLY 306

Query: 246 VAKKSGRNRV 255
           +AK  GRNRV
Sbjct: 307 MAKNQGRNRV 316


>gi|194364972|ref|YP_002027582.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
 gi|194347776|gb|ACF50899.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
          Length = 471

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 10/172 (5%)

Query: 97  YNRISQL-SRIDCLSGLLNHSAFISS-------LGSYNE-KLSIVFFDIDYFKQINDNFG 147
           + RI +L +  D L+ LLN   F+ +       L + N    S++  D+D+FK IND  G
Sbjct: 287 FERIGELDAGSDALTNLLNRR-FLPTVLRREIELATRNRTPFSLLLLDLDHFKAINDGHG 345

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+ +  ++  L  +     ++ R GGEEF    + +SE +AA++A  LR+ I  S 
Sbjct: 346 HDAGDRALQHVAGVLGQLTRGSDYLFRYGGEEFVVVLVAASESQAAVIAESLRRQIAKSP 405

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +++G  + +T S G+A          ++ RAD A+Y AK+SGRNRVV  S
Sbjct: 406 VPLANGQVLSLTASIGVAGHDGHPDYERLMARADAAMYEAKRSGRNRVVVAS 457


>gi|302186039|ref|ZP_07262712.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 418

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 89/167 (53%), Gaps = 11/167 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +++  D L+GL N  +        I ++    +  S++  DID+FK +ND +GHP 
Sbjct: 255 QKLLEIAHSDPLTGLDNRRSAEHMLERQIPAVSMSGKPFSLIICDIDHFKAVNDRYGHPA 314

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VI  ++  L           R GGEEF      SS ++AA LA  +R  +EN  I  
Sbjct: 315 GDSVITSVAAILKQRIRLMDIAARWGGEEFLILVPDSSLRQAAELAERIRNSVENLVIPE 374

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +      +TIS G+AE    E  +++I RAD+ALY AK+ GRNRV C
Sbjct: 375 TGS----VTISLGVAELSAGETAASLIQRADKALYQAKRLGRNRVEC 417


>gi|325292439|ref|YP_004278303.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325060292|gb|ADY63983.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 430

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 92/178 (51%), Gaps = 11/178 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           E      R+ +L+  D L+GL N  +F       +  +   +E  ++   DID+FK+IND
Sbjct: 243 ETLKQLKRLRELAERDHLTGLPNRRSFFERTRALMDVINDNDENGAVAILDIDHFKKIND 302

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GH  GD+ +  L++ L  +      +  RLGGEEFA    G +   A     +LR  +
Sbjct: 303 TLGHDAGDRALKKLAELLHDMCHEQRHIPARLGGEEFAVFLRGLNAHAAYQFCEELRGAV 362

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E +   +S G S+ +TIS G+ E    EP    +  ADQ LY+AK +GRNRV  +SDI
Sbjct: 363 EKNGRQLS-GSSLALTISLGVVEIEKGEPFDNQLNAADQLLYLAKANGRNRV--YSDI 417


>gi|70729826|ref|YP_259565.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5]
 gi|68344125|gb|AAY91731.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5]
          Length = 315

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 87/169 (51%), Gaps = 10/169 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            ++  LSR D L+ L N   +   L      +   ++++  DID+FK IND  GH  GD 
Sbjct: 149 QQLQHLSRTDHLTQLYNRGHWEQRLQFEYSRHGSSIALLMLDIDHFKSINDRHGHQAGDA 208

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           VI  +S+ +          GR GGEEFA     +    A  LA  LR+ +E  ++ I +G
Sbjct: 209 VIKRVSELIHQHVRDSDVAGRYGGEEFAILLPHTDLAGARTLAERLRQSVEEQEV-IHNG 267

Query: 214 PSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFS 259
            +I  TIS GIA  C   P      +I  ADQALY +K++GRNRV  ++
Sbjct: 268 QAIAFTISLGIA--CLDRPARDHRCLIEWADQALYASKRAGRNRVSTYA 314


>gi|313623161|gb|EFR93423.1| ggdef domain-containing protein [Listeria innocua FSL J1-023]
          Length = 379

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 11/167 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-GSYN------EKLSIVFFDIDYFKQINDNFGHPVG 151
            + Q + +D L+GL N   F  +   ++N        LS++  DIDYFK++ND +GH VG
Sbjct: 204 ELQQSTILDPLTGLTNFRHFEKTFEAAFNYATLKKSNLSLIIIDIDYFKRVNDTYGHLVG 263

Query: 152 DKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           + V++  S  L+ + F     + R+GGEEFA      +  E   LA  +R+ +E   + I
Sbjct: 264 NGVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPI 323

Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255
           ++  S+ ITISAGIA    K   S   +++ ADQALY AK++GRN+V
Sbjct: 324 ATTGSV-ITISAGIANYDGKNYPSANELMHAADQALYNAKRNGRNQV 369


>gi|119776342|ref|YP_929082.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B]
 gi|119768842|gb|ABM01413.1| diguanylate cyclase [Shewanella amazonensis SB2B]
          Length = 624

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 99/185 (53%), Gaps = 15/185 (8%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           +L+EL     ++++ + ID L+G+ N +AF   L +           ++++  DID+FK 
Sbjct: 438 VLRELNEVNQKLTEQTTIDSLTGVKNRAAFNKRLQAEGRISRRQQTPMALLMLDIDHFKN 497

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAI-LANDL 199
           IND +GH  GD  +  ++D L      P   V R GGEEF A  L S++ E A+ +A  +
Sbjct: 498 INDKYGHLAGDYTLKAIADTLSAQLRRPTDLVSRFGGEEF-AIILPSTDAEGAVAVAEHI 556

Query: 200 RKIIENSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R+ +E   I       I +T+S G++       + P+  ++ +AD+ALY AK  GRNRV 
Sbjct: 557 REAVEELTIKWEQF-MIPLTVSIGVSSNIIESDEHPLQ-LLEQADKALYQAKHDGRNRVG 614

Query: 257 CFSDI 261
            F DI
Sbjct: 615 LFQDI 619


>gi|313682742|ref|YP_004060480.1| diguanylate cyclase with extracellular sensor [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155602|gb|ADR34280.1| diguanylate cyclase with extracellular sensor [Sulfuricurvum
           kujiense DSM 16994]
          Length = 754

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 87/169 (51%), Gaps = 13/169 (7%)

Query: 97  YN-RISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFG 147
           YN R+ +LS  D L+G+ N       LG   +K+        +I+  D+D+FK IND FG
Sbjct: 588 YNTRLLELSTTDKLTGIYNRQKTDEKLGHEQQKVNRYRGYHCTIMMIDVDHFKNINDTFG 647

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+++  L++ +         +GR GGEEF      +S  EAA +A  LR  + N  
Sbjct: 648 HQEGDRILQKLAEVMKKSLRQSDMIGRWGGEEFMVILSHTSLDEAATVAEHLRHTV-NEF 706

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                 P   +TIS G+ E  + E +   + R D ALY AK+SGRN VV
Sbjct: 707 PFTELYP---VTISIGVGEFMYGEEVHECVARVDAALYRAKESGRNSVV 752


>gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [Herminiimonas arsenicoxydans]
 gi|133737925|emb|CAL60970.1| conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 568

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 97/183 (53%), Gaps = 29/183 (15%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS--------------IVFFD 135
           L+EL I+   + QL+R D L+GL N           NE+L+              I+  D
Sbjct: 391 LQELNIT---LEQLARTDALTGLANRM-------HTNERLAEEFARFKRSKIPYCILMLD 440

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D+FK++ND +GH VGD+V+  ++  L        FVGR GGEEF +    +    A ++
Sbjct: 441 VDFFKRVNDIYGHGVGDEVLKHVASILSATVRKTDFVGRHGGEEFLSILPMTDSSAAMVV 500

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI-IYRADQALYVAKKSGRNR 254
           A  +R  IE++ I    GP  ++T+S G+ E    +    + + RAD+ +Y AKKSGRN+
Sbjct: 501 AEKIRNTIESTPI----GPVGNLTVSIGVQEVTVNDINEDVAVTRADECMYQAKKSGRNK 556

Query: 255 VVC 257
           V+ 
Sbjct: 557 VIS 559


>gi|239907745|ref|YP_002954486.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239797611|dbj|BAH76600.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 458

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 108/213 (50%), Gaps = 21/213 (9%)

Query: 62  EYILVENLSLVIISITISLLLGYISG--SILKELFISYN-RISQL-------SRIDCLSG 111
           E I+  ++S+ + ++T   L+G I+   +++  + +++N RI++L       SR D L+G
Sbjct: 249 EEIVNRHVSINVETMTDYGLIGRIAAGFALIVAIVVAWNLRINKLYAELERRSRTDPLTG 308

Query: 112 LLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           L N +   + L         YN   +++ FD+D FK +ND  GH VGDKV+  L++    
Sbjct: 309 LANRTHLDAVLRQEADRAERYNRPFAVILFDVDLFKAVNDAHGHLVGDKVLKTLAEAAQA 368

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                  VGR GGEEF      +    A +LA  LR  +   +    +      T+S G+
Sbjct: 369 TVRASDMVGRWGGEEFLVLCPETDAASALVLAERLRLAVRGERFETGT----VQTVSLGV 424

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           A     + + +++ RAD ALY AK +GR+R + 
Sbjct: 425 AAFAPGDCVDSLLIRADDALYKAKNAGRDRAMA 457


>gi|209549612|ref|YP_002281529.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535368|gb|ACI55303.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 355

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 96/183 (52%), Gaps = 18/183 (9%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEK-----LSIVFFDIDYFKQI 142
           + KEL   Y RI+     D L+ L N  AF   L + +N        +++  DID FK+I
Sbjct: 165 VRKELD-EYKRIAN---TDSLTRLSNRRAFDERLAAVFNNPGMRPVTALLLADIDNFKKI 220

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GHPVGDK++A ++  +       +FV R GGEEFA    G++ +E   +A  +R+ 
Sbjct: 221 NDTYGHPVGDKILATVASVIRSNVRRDVFVARAGGEEFALIIDGNTPEEITAIAERIRRT 280

Query: 203 IE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +E     NS+  ++ GP   IT+S GI      E    +  + D ALY AK +GRN  + 
Sbjct: 281 LETTPFKNSRTRVNYGP---ITVSIGICMASSAEDAGELYSKTDIALYGAKNAGRNCTIL 337

Query: 258 FSD 260
           + D
Sbjct: 338 YQD 340


>gi|153835016|ref|ZP_01987683.1| sensory box/ggdef family protein [Vibrio harveyi HY01]
 gi|148868537|gb|EDL67634.1| sensory box/ggdef family protein [Vibrio harveyi HY01]
          Length = 539

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 103/200 (51%), Gaps = 16/200 (8%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY- 125
           E   L+ + + +S++L Y         F    RI  L+  D L+GL+N +AF S      
Sbjct: 339 ERKWLMQVGVVLSIVLAYFIARFQLRAFSDNQRIYYLAHHDSLTGLVNRAAFQSQASEVL 398

Query: 126 ------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                   ++ +++ D+D FK IND +GH  GDK +  ++  +  VFG+   + RLGG+E
Sbjct: 399 AQCLKAGREVCLIYLDLDSFKFINDEYGHAAGDKTLQHVASVMQRVFGSKALLARLGGDE 458

Query: 180 FAAAALGSSE--QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PIS 234
           F A  L S E  Q+    A+ L ++I++    I   P ++  ++  I     KE    + 
Sbjct: 459 F-AILLSSQEHMQDPEHFASSLIQLIQDP---IEVRPDVYHQVTTSIGGCYAKETNCTLD 514

Query: 235 TIIYRADQALYVAKKSGRNR 254
            ++++AD A+Y AKKSG+NR
Sbjct: 515 ELMHQADMAMYEAKKSGKNR 534


>gi|148554237|ref|YP_001261819.1| diguanylate cyclase [Sphingomonas wittichii RW1]
 gi|148499427|gb|ABQ67681.1| diguanylate cyclase [Sphingomonas wittichii RW1]
          Length = 1004

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 89/171 (52%), Gaps = 8/171 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNE---KLSIVFFDIDYFKQIND 144
           +L  +  R+  L+  D L+G  N   F++     +G+       L +   D+D FK +ND
Sbjct: 827 DLRAANERLGHLALTDPLTGCANRRHFLALAEDQIGAARRGGRPLCLAILDLDEFKAVND 886

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GHP GD V+      L+         GR+GGEEFA     ++  +A + A+ LR+ I 
Sbjct: 887 RHGHPGGDAVLEMAGILLLDHLREGDAAGRIGGEEFAILMPNTAIADARLFADRLREAIA 946

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++I +  G SI +++S G+AE C  E    +  RAD  LY AK++GRNRV
Sbjct: 947 TARITVD-GLSIGVSVSMGVAELCDDEDFGRLYARADTGLYAAKQAGRNRV 996


>gi|17547151|ref|NP_520553.1| hypothetical protein RSc2432 [Ralstonia solanacearum GMI1000]
 gi|17429453|emb|CAD16139.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum GMI1000]
          Length = 551

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 102/196 (52%), Gaps = 15/196 (7%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNR----ISQLSRIDCLSGLLNHSAFISSLGS-- 124
           LV + +  SLL       + + L  S  R    ++  +  D L+G+L    F++   +  
Sbjct: 355 LVFVLVVWSLLRERQHHRVTRHLNQSLQRTNSALANEAHFDHLTGVLTRRRFLALFETVL 414

Query: 125 -----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                  E+L +V  D+D+FK+IND +GH VGD  +   +     V  +   +GRLGGEE
Sbjct: 415 TRTHVRGEQLVLVLADLDHFKRINDTWGHAVGDLALQRFASLATSVMRSSDLIGRLGGEE 474

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIY 238
           FA     ++ +EAA +   LR  +  +  ++ SG  + +T+S G+   CH  +  S ++ 
Sbjct: 475 FAVVMGRTTLEEAAGVVERLRAAVAEADASLPSG--LAMTVSLGMTA-CHTGDTASEMLR 531

Query: 239 RADQALYVAKKSGRNR 254
           RAD ALY AK+SGRNR
Sbjct: 532 RADLALYRAKESGRNR 547


>gi|89092186|ref|ZP_01165140.1| diguanylate cyclase, putative [Oceanospirillum sp. MED92]
 gi|89083274|gb|EAR62492.1| diguanylate cyclase, putative [Oceanospirillum sp. MED92]
          Length = 529

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 104 SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GL N +A+   +         Y    S+V  D+D+FK+IND +GH  GDKV+ 
Sbjct: 369 ARTDPLTGLPNRAAYDEQIAQEYERWSRYRTSFSVVVADLDFFKKINDTYGHLAGDKVLR 428

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++  +        FV R GGEEF      +  +EAA   + LR+ + +S  N    P +
Sbjct: 429 LVAKVITKNIRVTDFVARYGGEEFVILLPSTVAEEAAQAMDKLRESLASSPFNFHGKP-V 487

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            IT+S G+ E    + +  +  RAD+ALY AK+ GRN
Sbjct: 488 GITMSFGVTEIKEGDSLDDVFTRADEALYQAKEDGRN 524


>gi|312964602|ref|ZP_07778853.1| diguanylate cyclase domain protein [Escherichia coli 2362-75]
 gi|312290623|gb|EFR18501.1| diguanylate cyclase domain protein [Escherichia coli 2362-75]
          Length = 371

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMFGTPA-ESAITA--MLRVHEGLNTLRLPNAPQVTLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367


>gi|317131122|ref|YP_004090436.1| diguanylate cyclase [Ethanoligenens harbinense YUAN-3]
 gi|315469101|gb|ADU25705.1| diguanylate cyclase [Ethanoligenens harbinense YUAN-3]
          Length = 394

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 99/182 (54%), Gaps = 8/182 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           +EL I+  ++ +L+ +D L+ L N  +F   +      +  +S++  DIDYFKQ ND++G
Sbjct: 213 RELAIANMQLKKLTLMDELTELPNRRSFREFVDKTFQMHSTVSVIMIDIDYFKQYNDSYG 272

Query: 148 HPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  GD  +  ++ Q+  +V  T     R GGEEF  AA   +++    +AN LR  I N 
Sbjct: 273 HDAGDAALTTVAKQIGSIVENTYQIAVRWGGEEFIYAAFNITKENIIEIANALRLRILNL 332

Query: 207 QI-NISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +I N +S    +ITIS GI      + +   +II  ADQALY AK +GRNRV    D E 
Sbjct: 333 KIPNRNSLACPYITISLGICTGTVANIKNFDSIIKIADQALYQAKNNGRNRVTIL-DYEE 391

Query: 264 NT 265
            T
Sbjct: 392 ET 393


>gi|157375073|ref|YP_001473673.1| hypothetical protein Ssed_1934 [Shewanella sediminis HAW-EB3]
 gi|157317447|gb|ABV36545.1| conserved hypothetical protein [Shewanella sediminis HAW-EB3]
          Length = 634

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 86/168 (51%), Gaps = 13/168 (7%)

Query: 100 ISQLSRIDCLSGLLNHSA----FISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGD 152
           I +LS  D L+GL N       FI+    +N    + S++  D+D+FKQ+ND FGH VGD
Sbjct: 471 IERLSVTDTLTGLNNRRRLDELFINEFDRFNRYERQFSMILLDVDHFKQVNDKFGHKVGD 530

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KV+  + + L         +GR GGEEF      +S   A  LA  +RKIIE++      
Sbjct: 531 KVLIEMGEILASSVRKNDLLGRWGGEEFLLICPETSIDGAIDLAEKIRKIIEDTDF---- 586

Query: 213 GPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            P I  +T S G+      +    +  RAD ALY AK+ GRN VV  +
Sbjct: 587 -PEIGSVTASFGVTVSIKDDSDEDMFIRADNALYTAKRDGRNCVVQLT 633


>gi|298291254|ref|YP_003693193.1| diguanylate cyclase [Starkeya novella DSM 506]
 gi|296927765|gb|ADH88574.1| diguanylate cyclase [Starkeya novella DSM 506]
          Length = 511

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 90/177 (50%), Gaps = 10/177 (5%)

Query: 100 ISQLSRIDCLSGLLNHSA-----FISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGD 152
           + +LS  D L+GL N  A        +L +  +K  LS+   DIDYFK++ND +GH +GD
Sbjct: 326 LQRLSLTDALTGLPNRRACDLMLAHEALRAARDKTELSVAMIDIDYFKRVNDRYGHQIGD 385

Query: 153 KVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           +VIA ++  +         +  R GGEEF      +    A  LA  +R+ IE   +   
Sbjct: 386 RVIARVAATIEATARRAGDYAARYGGEEFMLILPSTGADGALFLAERVRRAIEGQDLQAE 445

Query: 212 SGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           +     +TIS G+A R   +   I  ++ +AD+ALY AK SGRNRVV  S  E    
Sbjct: 446 APGLSGVTISIGLATRSVDDASTIEDLVQKADRALYNAKSSGRNRVVAASAREEPAA 502


>gi|170690912|ref|ZP_02882078.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia graminis
           C4D1M]
 gi|170144161|gb|EDT12323.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia graminis
           C4D1M]
          Length = 312

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 11/203 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           L     +V + +TIS +  ++S  + +E   +  ++ + +  D L+G+ N   F + L  
Sbjct: 113 LTREREVVAVCVTISDVT-HVS-IVQREREEAVAKLQEYADRDGLTGIANRRYFEARLLD 170

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   +S++ FD+D+FK+IND FGH VGD V+  ++ ++  V       GR GG
Sbjct: 171 EYTRWQRYGGDMSVLLFDLDHFKKINDQFGHGVGDTVLRVMAQRVAGVVRAQDTFGRFGG 230

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS-AGIAERCHKEPISTI 236
           EEFA     +  ++A  +A  +R  I ++ + +  G S+ +T S  G A R        +
Sbjct: 231 EEFALLLPCTPLEDAMRVAEKIRCTIADTPVEV-QGTSVPVTASVGGAAARPGLPAYEVL 289

Query: 237 IYRADQALYVAKKSGRNRVVCFS 259
           I  AD ALY AK+ GRNR V  +
Sbjct: 290 INEADAALYSAKRQGRNRSVALT 312


>gi|168259727|ref|ZP_02681700.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205350547|gb|EDZ37178.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 570

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+ +  T  LL+ + +   ++K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 -YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            Y E     S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKAQAQQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY AK+SGRNR +C SD
Sbjct: 542 LADKRLYYAKQSGRNR-ICASD 562


>gi|320162556|ref|YP_004175781.1| putative signaling protein [Anaerolinea thermophila UNI-1]
 gi|319996410|dbj|BAJ65181.1| putative signaling protein [Anaerolinea thermophila UNI-1]
          Length = 609

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 9/167 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           ++ + +L+R+D L+G LN  +F       I     Y+  LS++  D+D+FKQ+ND +GH 
Sbjct: 442 FSEVQRLARLDSLTGALNRRSFYDQGQHEIQRAQRYHSPLSLIMLDVDHFKQVNDRYGHL 501

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+ +  +    +       +VGR GGEEF      +S + A  +A  L   +E  +  
Sbjct: 502 AGDEALKAVVQTCLAQVRQADWVGRFGGEEFVILLPETSLEGALAMAQRLCTAVETLRFP 561

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
                 + ITIS G+AER      +  ++  AD+ALY AK  GRNRV
Sbjct: 562 -GRDERMCITISVGVAERTLEMTQVEQLLNAADEALYRAKAMGRNRV 607


>gi|158424341|ref|YP_001525633.1| GGDEF domain-containing protein [Azorhizobium caulinodans ORS 571]
 gi|158331230|dbj|BAF88715.1| GGDEF domain protein [Azorhizobium caulinodans ORS 571]
          Length = 510

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 89/171 (52%), Gaps = 10/171 (5%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +LS+ D L+GL N   F                 ++++  DID+FKQ+ND  GHP GD+V
Sbjct: 335 RLSQTDSLTGLPNRRHFDEFGQREWQRAARQRSSIAVLMVDIDHFKQVNDRIGHPGGDRV 394

Query: 155 IAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  +SD +      P  F GR GGEEFA     +    AA +A  +R  IE +     + 
Sbjct: 395 LREVSDIIRASLHRPGDFAGRYGGEEFAIILPETDAPAAAHVAERIRAAIEANTAEGVAP 454

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            ++ I ++AG+A    K  ++ ++  AD ALY AK++GRNRVV      N+
Sbjct: 455 VTVSIGLAAGLA--APKGTLAEMMIAADHALYRAKETGRNRVVSSHVARND 503


>gi|170742549|ref|YP_001771204.1| diguanylate cyclase [Methylobacterium sp. 4-46]
 gi|168196823|gb|ACA18770.1| diguanylate cyclase [Methylobacterium sp. 4-46]
          Length = 383

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 10/172 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGH 148
           KE      R+S L+  D L+G LN      +          +++  D+D+FK++ND +GH
Sbjct: 208 KERLEWQQRLSALT--DPLTGALNRRGLEQAAACVLAGGPATLLLLDLDHFKRVNDTYGH 265

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+V+   +  +         +GRLGGEEF  A L    + A  +A  +R+ +  + +
Sbjct: 266 GVGDEVLVACAAAMPGCLPPRAVIGRLGGEEF--ACLLPDGEGAGEIAEAIRRAV--AAL 321

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +   P +H+T S G A R   E +  +I RAD+ALY AK+ GRNRV    D
Sbjct: 322 RLERAPDLHVTASIG-AARGGSE-LQCLIARADRALYRAKRGGRNRVAWDPD 371


>gi|78777034|ref|YP_393349.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78497574|gb|ABB44114.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM
           1251]
          Length = 487

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 91/174 (52%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNH---SAFISSL----GSYNEKLSIVFFDIDYFKQIN 143
           K L  +  +++ L+  D L+ + N      FIS        YN  L+++  DID+FK++N
Sbjct: 317 KSLMEANQKLNNLASKDSLTNIFNRRIIDEFISKETIKSKRYNNSLALIMIDIDHFKEVN 376

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGD+VI  L D +          GR GGEEF      ++  +A I+A ++RK +
Sbjct: 377 DKYGHQVGDEVILSLVDIISKNIRESDIFGRWGGEEFIILLPETNLNQATIVAQNIRKKV 436

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  + +   G     TIS G++E    +  +  I R D ALY AK +GRNRVV 
Sbjct: 437 QEYRFD-KVGQK---TISLGVSEFNSNDDSTVFIKRVDDALYKAKATGRNRVVS 486


>gi|241763407|ref|ZP_04761462.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
 gi|241367449|gb|EER61760.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
          Length = 445

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 98/196 (50%), Gaps = 9/196 (4%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
           V++  T+SL+L      +L    I+   +  L+ +D L+ + N  AF       IS+   
Sbjct: 242 VVLEATLSLVLMAFGALMLTNEHIT-RELRHLAEVDPLTNVFNRRAFLTLLEKAISNAQR 300

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
               L ++  D+D+FK+IND +GH  GD+V+                +GRLGGEEFA   
Sbjct: 301 TQSGLPVLVIDLDHFKKINDTWGHQSGDEVLRHFVALANGCLRKEDVMGRLGGEEFAIFL 360

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +S + +  +A  LR ++ +       GP I +T+S G+ +    E    ++ RAD+A+
Sbjct: 361 PNASSEGSQAVAERLRALVAHHPAMTGRGP-IALTVSIGVTQYGGGETSDFVLQRADEAM 419

Query: 245 YVAKKSGRNRVVCFSD 260
           Y AK+ GRNRV   S 
Sbjct: 420 YRAKERGRNRVETLSP 435


>gi|218458040|ref|ZP_03498131.1| putative sensory box/GGDEF family protein [Rhizobium etli Kim 5]
          Length = 242

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 97/183 (53%), Gaps = 18/183 (9%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQ 141
            + KEL   Y RI+     D L+ L N  AF   L +  +        +++  DID FK+
Sbjct: 29  QVRKELD-EYKRIAN---TDSLTRLSNRRAFDDRLAAVFDNPGMRPVTALLLADIDNFKK 84

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GHPVGDK++A ++  +       +FV R GGEEFA    G++ +E + +A  +R+
Sbjct: 85  INDTYGHPVGDKILATVASVIRSNVRRDVFVARAGGEEFALIIEGNTAEEVSAIAERIRR 144

Query: 202 IIE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +E     NS+  ++ GP   IT+S GI    + E    +  + D ALY AK +GRN +V
Sbjct: 145 TLETTPFKNSRTRVNYGP---ITVSIGICMASNAEDAGELYSKTDIALYGAKNAGRNCIV 201

Query: 257 CFS 259
            + 
Sbjct: 202 LYQ 204


>gi|319765034|ref|YP_004128971.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|317119595|gb|ADV02084.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
          Length = 395

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 10/162 (6%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N  A + +L           E  +++  D+D+FK +ND  GH  GD+V+  ++
Sbjct: 222 DELTGVANRRALVQALDRDVAHAVRSGEPYALLMLDVDHFKSVNDGHGHRAGDQVLCHVA 281

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         VGR GGEEF     G+  + AA LA  LR+ +E +      G  I +T
Sbjct: 282 AILRARLRAQDLVGRYGGEEFMVLLPGTPARGAAGLAKTLREAVEQTPCEY-GGRVIPVT 340

Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +S G+  A     +    +I+ ADQALY AK +GRNRV C +
Sbjct: 341 VSIGVCSARLGSGDTWDRLIHAADQALYAAKAAGRNRVECVA 382


>gi|238790452|ref|ZP_04634222.1| Diguanylate cyclase [Yersinia frederiksenii ATCC 33641]
 gi|238721478|gb|EEQ13148.1| Diguanylate cyclase [Yersinia frederiksenii ATCC 33641]
          Length = 319

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 96/185 (51%), Gaps = 14/185 (7%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIV 132
           LLG ++    K L  +   + ++S  D L+GL N        H+ F  S   Y    +++
Sbjct: 135 LLGLVTYRTAKRLAENKEELLRISVRDGLTGLYNRRHWEHQLHNQF-DSCRRYQHGATLI 193

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQE 191
             DID FK IND FGH VGD+ I  L+++L++       VGR GG+EF A    ++ EQ 
Sbjct: 194 LLDIDNFKAINDTFGHAVGDEAITVLAEELLLGLRAIDIVGRYGGDEFGAILPNTTAEQT 253

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250
             IL     K+   + I  +  P++ + +SAGIA+  H        +  AD ALY+AK +
Sbjct: 254 REILTRIQEKL---AGIVFTQAPTLQLKVSAGIADYRHDMINYQQWLKAADSALYLAKDN 310

Query: 251 GRNRV 255
           GRNR+
Sbjct: 311 GRNRI 315


>gi|322434116|ref|YP_004216328.1| diguanylate cyclase [Acidobacterium sp. MP5ACTX9]
 gi|321161843|gb|ADW67548.1| diguanylate cyclase [Acidobacterium sp. MP5ACTX9]
          Length = 397

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 9/163 (5%)

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+G LN  A        ++        L ++  D+D+FK++ND FGH  GD  + 
Sbjct: 222 ARTDSLTGALNRRALRVEGAREVARTLRSGHTLCLLLLDVDHFKELNDTFGHSAGDAALQ 281

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
           ++  Q+  V  T   + R GGEEF      +      ++A  LR  +++    I  G +I
Sbjct: 282 YMVQQVRGVLRTQDLLARSGGEEFTILLPETPLDRGELVAERLRLEVDSKDF-IYEGTAI 340

Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           H+++S G+A    H      ++ RAD A+Y+AK+ GRNRV+ +
Sbjct: 341 HLSVSVGVATLDPHCADFEALMRRADSAMYMAKRMGRNRVMAY 383


>gi|257485985|ref|ZP_05640026.1| GGDEF [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|298486063|ref|ZP_07004133.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298159411|gb|EFI00462.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|330988649|gb|EGH86752.1| hypothetical protein PLA107_26732 [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331010305|gb|EGH90361.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 358

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 20/222 (9%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L P   L   + +  + + + +   + +G++S  +  +L+   N + ++SR D L+GLLN
Sbjct: 135 LNPAVNLHGNMAQIYACLPVLVIYPIFIGWMSHQVTLKLWEHRNILRKISRTDSLTGLLN 194

Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
           H A+   L        + +++  I   DID+FK IND +GH +GD V+  +S+ L+    
Sbjct: 195 HGAWKDLLDLEYVKSQNQHQQCVIALIDIDHFKVINDTYGHLMGDTVLQNISEALMENLR 254

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-----SSGPSIHITISA 222
               +GR GG+EF      +   +A       R+I+E +++ I     S    + +++S 
Sbjct: 255 DSDLIGRCGGDEFCVILPDTHLFQA-------REILERTRLAIDEMTYSLQRDLKVSLSI 307

Query: 223 GIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           GIA    + P  S+ ++ AD+ALY+AK +GRN V    D+ +
Sbjct: 308 GIAAYSPELPDASSWLHEADKALYLAKSTGRNCVASAQDMPS 349


>gi|310821439|ref|YP_003953797.1| GAF domain/GGDEF domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394511|gb|ADO71970.1| GAF domain/GGDEF domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 720

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 92/176 (52%), Gaps = 9/176 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           + ++ +++  D L+GLLNH  F       ++    Y  KLS++  DID+FK +ND +GHP
Sbjct: 537 FEQMERMATTDGLTGLLNHRTFQSKADEHLAQARRYQRKLSLILTDIDHFKSVNDTYGHP 596

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  L         V R GGEEFA     +  + A ++A  +R+ ++     
Sbjct: 597 TGDAVLKGVAKILRDKARDTDIVARYGGEEFAIIMPETDAKGALVIAERIREAVKAEVFQ 656

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
              GP + +T+S GI+    H      +I  +DQ LY AK++GRN+ V  + ++  
Sbjct: 657 TEMGP-LKVTLSLGISTGPDHGYDKQHLIDLSDQCLYHAKRNGRNQSVTVAQMQGG 711


>gi|261250469|ref|ZP_05943044.1| putative sensory box/GGDEF family protein [Vibrio orientalis CIP
           102891]
 gi|260939038|gb|EEX95025.1| putative sensory box/GGDEF family protein [Vibrio orientalis CIP
           102891]
          Length = 325

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 102/179 (56%), Gaps = 10/179 (5%)

Query: 91  KELFISYNRISQLSRI---DCLSGLLNHSAFISSLG-SYNEK----LSIVFFDIDYFKQI 142
           KE+  S+   ++L R+   D L+G+LN  AFI  L   +N      LS +  DID+FK+I
Sbjct: 129 KEITQSHLHETELKRLAETDELTGILNRRAFIQGLECEFNAPAPLLLSCLMLDIDHFKEI 188

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD+VI  ++     +  +  ++GRLGGEEF      ++  +A  +A  +R+ 
Sbjct: 189 NDQVGHLSGDEVITQVAHICQGLIRSSDYIGRLGGEEFGIVLSRTNAIQAYDIAERIRQS 248

Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           IE +  ++  G  I+ T+S GIAE       I  ++ +AD+A+Y +K++GRN+V  + D
Sbjct: 249 IETTPCHV-DGHIIYPTVSIGIAELNSQVSSIKELLVQADKAMYYSKQTGRNQVTLYYD 306


>gi|239908167|ref|YP_002954908.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239798033|dbj|BAH77022.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 420

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 93/176 (52%), Gaps = 16/176 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++L+  D L+G  N   F       ++    Y E LS+V FDID+FK +ND +GH  GD
Sbjct: 240 LAELAVTDQLTGAYNRLKFNEVMHTQVARSARYGEALSVVMFDIDHFKVVNDTYGHGAGD 299

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++  L+ +++       ++ R GGEEF  AA  ++   AA+LA  LR I+         
Sbjct: 300 DMLRELARRVIEATRGVDWLFRYGGEEFVVAAPHTALGNAALLAEKLRLIVAGKPFPH-- 357

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV---CFSDIENNT 265
              I  +IS G+AE    E +  ++ R D ALY AK +GRNRV    C S  EN+T
Sbjct: 358 --GIAGSISLGVAELKPGESVEELMARVDAALYTAKNAGRNRVAVAGCAS--ENDT 409


>gi|91778091|ref|YP_553299.1| diguanylate cyclase [Burkholderia xenovorans LB400]
 gi|91690751|gb|ABE33949.1| Putative diguanylate cyclase (GGDEF domain) [Burkholderia
           xenovorans LB400]
          Length = 381

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 109/214 (50%), Gaps = 16/214 (7%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILK--ELFISYNRISQ----LSRIDCLSG 111
            YG  +++   L  V  S  I L LG ++   L    + ++++R+++    L+ ID L+G
Sbjct: 169 MYGFGWLVQTGLLQVSPSNVIFLALGILAPLCLSIGVVMLAHDRLAERLERLANIDDLTG 228

Query: 112 LLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
            L+  AF++       +       L++   DID FK +NDN GH  GD+V++  +  +  
Sbjct: 229 ALSRRAFLAVGDALLNASRRTRSPLAMAIIDIDSFKAVNDNHGHAAGDQVLSHFATFVAR 288

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAG 223
              T    GRLGGEEF      ++  EA  L + LR ++   +   +  G  +  T S G
Sbjct: 289 NLRTGDVFGRLGGEEFGVLCPATTTAEAVSLLDRLRIRLAATAPNGLPRG--LRYTFSVG 346

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +    E ++ ++ RAD ALYVAK SGRNRV+ 
Sbjct: 347 VDQLRRDESLAQLMARADGALYVAKASGRNRVMA 380


>gi|330827229|ref|YP_004390532.1| diguanylate cyclase [Alicycliphilus denitrificans K601]
 gi|329312601|gb|AEB87016.1| diguanylate cyclase [Alicycliphilus denitrificans K601]
          Length = 395

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 10/162 (6%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N  A + +L           E  +++  D+D+FK +ND  GH  GD+V+  ++
Sbjct: 222 DELTGVANRRALVQALDRDVAHAVRSGEPYALLMLDVDHFKSVNDGHGHRAGDQVLCHVA 281

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         VGR GGEEF     G+  + AA LA  LR+ +E +      G  I +T
Sbjct: 282 AILRARLRAQDLVGRYGGEEFMVLLPGTPARGAAGLAKTLREAVEQTPCEY-GGRVIPVT 340

Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +S G+  A     +    +I+ ADQALY AK +GRNRV C +
Sbjct: 341 VSIGVCGARLGSGDTWDRLIHAADQALYAAKAAGRNRVECVA 382


>gi|268680356|ref|YP_003304787.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618387|gb|ACZ12752.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 390

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 95/166 (57%), Gaps = 16/166 (9%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSI----------VFFDIDYFKQINDNFGHPVGD 152
           L++ID L+ + N   F   L    EK+++          +  DID+FK++ND +GH VGD
Sbjct: 224 LNQIDPLTNVSNRRVFERWL---EEKMTLYKTHRLSSCMIMMDIDFFKKVNDTYGHLVGD 280

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  L++++         + R GGEEFA     +S +   I+A  LR+++E  +I++  
Sbjct: 281 EVLIALANRMKHYVRDNDCLVRFGGEEFALLLFNTSAKRGYIIAERLRRMVEALKISLPH 340

Query: 213 GPS--IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            PS  I +T+S G++    +   I  II RAD+A+Y+AKK GRNRV
Sbjct: 341 HPSACISVTMSFGMSTFLNYDTTIENIISRADKAMYLAKKEGRNRV 386


>gi|254227922|ref|ZP_04921352.1| ggdef domain protein [Vibrio sp. Ex25]
 gi|262396095|ref|YP_003287948.1| GGDEF family protein [Vibrio sp. Ex25]
 gi|151939418|gb|EDN58246.1| ggdef domain protein [Vibrio sp. Ex25]
 gi|262339689|gb|ACY53483.1| GGDEF family protein [Vibrio sp. Ex25]
          Length = 337

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 92/162 (56%), Gaps = 5/162 (3%)

Query: 100 ISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           + Q +  D LS L N  AF   +SSL + N+ ++++  DID+FK  NDN+GH  GD V+ 
Sbjct: 174 VQQDALFDGLSNLYNRRAFDKDLSSLIASNQAMTLIMLDIDHFKSFNDNYGHLFGDTVLK 233

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPS 215
            ++ +L       +   R GGEEFA      S + A   A+ LR++IE  +I +  SG  
Sbjct: 234 AIARRLQQSCRDGICAYRFGGEEFALIVPNKSLRIARQYADTLRRMIEKLRIRDKRSGTQ 293

Query: 216 IH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +H IT S G+AE    +    ++ +AD+ LY AK+ GRNRV+
Sbjct: 294 VHSITASFGVAEYEVGDTPEALVNKADKQLYEAKQLGRNRVM 335


>gi|332706953|ref|ZP_08427013.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L]
 gi|332354218|gb|EGJ33698.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L]
          Length = 296

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 9/176 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           +E   + + +S+++ +D L+ L N  A  S L        S +  LS++  D+DYFK IN
Sbjct: 117 REAMHTNDFLSRIALVDPLTELSNRRAMESELPRQVKNAFSQSRPLSLIILDVDYFKSIN 176

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           DN+GHPVGD+ +  L+ +L         + R GGEEF      +  +EA  +AN +R II
Sbjct: 177 DNYGHPVGDRALKLLASRLKHNLRIQDSLFRYGGEEFVIILSHTDCEEARAVANRVRHII 236

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +    I     + ITIS G+A           +++  ADQ L +AK +GRN+V C
Sbjct: 237 SDQPFQIDRRLVLPITISLGVAALNNTDDHRGESLLRSADQNLRIAKSNGRNQVYC 292


>gi|289624169|ref|ZP_06457123.1| GGDEF [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|330869353|gb|EGH04062.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 358

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 115/223 (51%), Gaps = 20/223 (8%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L P   L   + +  + + + +   + +G++S  +  +L+   N + ++SR D L+GLLN
Sbjct: 135 LNPAVNLHGNMAQIYACLPVLVIYPIFIGWMSHQVTLKLWEHRNILRKISRTDSLTGLLN 194

Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
           H A+   L        + +++  I   DID+FK IND +GH +GD V+  +S+ L+    
Sbjct: 195 HGAWKDLLDLEYVKSQNQHQQCVIALIDIDHFKVINDTYGHLMGDTVLQNISEALMENLR 254

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-----SSGPSIHITISA 222
               +GR GG+EF      +   +A       R+I+E +++ I     S    + +++S 
Sbjct: 255 DSDLIGRCGGDEFCVILPDTRLFQA-------REILERTRLAIDEMSYSLQRDLKVSLSI 307

Query: 223 GIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           GIA    + P  S+ ++ AD+ALY+AK +GRN V    D+ + 
Sbjct: 308 GIAAYSPELPDASSWLHEADKALYLAKSTGRNCVASAQDMPSE 350


>gi|70731874|ref|YP_261616.1| YaiC/YhcK/ArdA family protein [Pseudomonas fluorescens Pf-5]
 gi|68346173|gb|AAY93779.1| YaiC/YhcK/ArdA family protein [Pseudomonas fluorescens Pf-5]
          Length = 356

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 90/170 (52%), Gaps = 12/170 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           +S LSR D L+GLLNH ++   L     K        SI   DID+FK IND +GH +GD
Sbjct: 180 LSALSRTDSLTGLLNHGSWKDLLHIKFHKCQQQQIDASIALIDIDHFKAINDTYGHIIGD 239

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  LS++L          GR GG+EF         Q+A  +   LR++   SQ     
Sbjct: 240 TVLRHLSNELRRNLRHDDLAGRYGGDEFCVILPRMDRQQALEVMERLRQVF--SQYRHPQ 297

Query: 213 GPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              + +++S G+A  +R  ++P S+ +  AD+ALY+AK SGRNR+    D
Sbjct: 298 VAELKVSLSIGLAAFDREFQDP-SSWLNAADKALYLAKNSGRNRIASNDD 346


>gi|313607993|gb|EFR84099.1| ggdef domain-containing protein [Listeria monocytogenes FSL F2-208]
          Length = 301

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 13/167 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q + +D L+GL N   F  +   ++N        LS++  DIDYFK++ND +GH VG+
Sbjct: 128 LQQSTILDPLTGLTNFRHFEKAFEAAFNHATLKKSNLSVIIIDIDYFKRVNDTYGHLVGN 187

Query: 153 KVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            V++  S  L+ + F     + R+GGEEFA      +  E   LA  +R+ +E   + I 
Sbjct: 188 GVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPIV 247

Query: 212 SGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  S+ ITISAGIA    R +  P + ++  ADQALY AK++GRN+V
Sbjct: 248 ASGSV-ITISAGIANYDGRNYPNP-NELLNAADQALYNAKRNGRNQV 292


>gi|260463951|ref|ZP_05812147.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075]
 gi|259030326|gb|EEW31606.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075]
          Length = 356

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 86/166 (51%), Gaps = 8/166 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-YNEKLSIVF-----FDIDYFKQINDNFGHPVGDKVI 155
           +L+  D L+ + N  AF   +   YN    I+F      DID FK IND +GHPVGDK+I
Sbjct: 175 RLADTDPLTHIWNRRAFDKEITRIYNSNKGILFNALILADIDRFKDINDRYGHPVGDKII 234

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +++         MFV R GGEEFA    G+SE     ++  +R +IE +    S   +
Sbjct: 235 QIIAEIFQTSIRGDMFVARTGGEEFALIIEGASEDATYDISERIRALIEQTPFTSSQTGA 294

Query: 216 IH--ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +  +T+S GI      +    +  +AD+ALY +K SGRNRV   S
Sbjct: 295 NYGTVTVSMGICMASEADGPEDLYTKADRALYRSKVSGRNRVTRHS 340


>gi|254475311|ref|ZP_05088697.1| response regulator PleD [Ruegeria sp. R11]
 gi|214029554|gb|EEB70389.1| response regulator PleD [Ruegeria sp. R11]
          Length = 270

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 99/184 (53%), Gaps = 12/184 (6%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVF 133
           L+G +S   ++EL  +Y  +   +  D L+ + N   F+ +L +  E        LS+  
Sbjct: 75  LVGILS---IRELTKAYELLQIEANTDPLTQVSNRRPFLKTLETNFENALEIGLPLSVAM 131

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D+FK IND++GH  GDKV+  LS  L+  F T   VGRLGGEEFA     +    A 
Sbjct: 132 LDVDHFKLINDSYGHDAGDKVLQELSRMLIREFRTVDLVGRLGGEEFALVFPETDLAGAF 191

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252
           I    LRK +E   I+ + G  I +T+S G+ E        ++++ RAD+ LY AK  GR
Sbjct: 192 IACERLRKSVEQQVIH-AHGHKIRLTVSIGLTEIAGGFVNGASLLKRADELLYSAKSGGR 250

Query: 253 NRVV 256
           N+VV
Sbjct: 251 NQVV 254


>gi|158336700|ref|YP_001517874.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158306941|gb|ABW28558.1| diguanylate cyclase (GGDEF domain), putative [Acaryochloris marina
           MBIC11017]
          Length = 420

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 98/180 (54%), Gaps = 11/180 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           K+L  +  ++S ++  D L+GL N   F   L           + LS++  DID+FKQ N
Sbjct: 238 KKLDEANKQLSLIANHDALTGLANRRRFDEYLQQIWKQTQREQQPLSLLICDIDFFKQYN 297

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD  +  ++ ++      P+  V R GGEEFA     +  +   ++A  LR I
Sbjct: 298 DTYGHLEGDICLRTVAQKIHQTIVRPLDLVARFGGEEFAIVLPNTDLEGGQVVAERLRMI 357

Query: 203 IENSQI-NISSGPSIHITISAGIAE-RCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
           I+ SQ+ +  S  S  +T+S G A  R H    +S++I RADQALY AK+SGR++VV  S
Sbjct: 358 IQKSQLPHRGSSVSEFVTVSIGAATVRSHPHTSVSSLISRADQALYQAKQSGRDQVVALS 417


>gi|34499692|ref|NP_903907.1| GGDEF family protein [Chromobacterium violaceum ATCC 12472]
 gi|34105543|gb|AAQ61897.1| probable GGDEF family protein [Chromobacterium violaceum ATCC
           12472]
          Length = 490

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 10/165 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ QL+  D L+G LN  AF+  L  +         +  ++  DID+FKQ+ND  GH +
Sbjct: 315 RRMRQLATTDPLTGCLNRLAFLDLLPGWLRACERTGAEPQLLMIDIDHFKQVNDKHGHQI 374

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  ++D L         + R GGEEF        E +A  LA  LR  +    +  
Sbjct: 375 GDQVLREIADLLRSQLRGSDLLIRWGGEEFVVLVGSHGEDDA--LAERLRTAVAR-HVMS 431

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +SG  + +T+S G+ +    E +   + RAD ALY AK+ GRNRV
Sbjct: 432 ASGKRLTVTVSLGLCQWLPPETLEAAVARADLALYAAKQGGRNRV 476


>gi|86137571|ref|ZP_01056148.1| GGDEF domain protein [Roseobacter sp. MED193]
 gi|85825906|gb|EAQ46104.1| GGDEF domain protein [Roseobacter sp. MED193]
          Length = 313

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 99/185 (53%), Gaps = 12/185 (6%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVF 133
           L+G +S   ++EL  +Y  +   +  D L+ + N   F+ +L +  E+       +S+  
Sbjct: 113 LVGILS---IRELTKAYELLQIEANTDPLTRVSNRRPFLKTLEAQFEQARQRRMPMSVAM 169

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D+FK+IND +GH  GDK +  LS  L+  F +   VGRLGGEEFA     +    A 
Sbjct: 170 LDVDHFKRINDTYGHDAGDKTLQALSRLLISEFRSIDLVGRLGGEEFALVFPDTDLVGAY 229

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
                LR ++++ +I ++    I +T+S G+ E   H      ++ RAD  LYVAK SGR
Sbjct: 230 SACERLRAMVQSKEI-LADKHKIRLTVSIGLTESAEHISAAPLLLKRADALLYVAKNSGR 288

Query: 253 NRVVC 257
           N+V+ 
Sbjct: 289 NKVMA 293


>gi|320335021|ref|YP_004171732.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
 gi|319756310|gb|ADV68067.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
          Length = 568

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 81/160 (50%), Gaps = 4/160 (2%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +++L+R D L+G+ N   F+  L     +    + +  D D+FK IND FGHP GD+V+ 
Sbjct: 410 LARLAREDALTGVANRRHFMDHLTLQARHAPTFAAIVLDADHFKSINDQFGHPTGDEVLR 469

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +   L         V RLGGEEF    L +    A  +A  +R  +  +       P  
Sbjct: 470 VIGRVLQQHVRAGDVVARLGGEEFGVLLLDADRARALDVAERIRAAL-ATHPWADVAPGA 528

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           H+T+SAG+A     +    +I  AD+ LY AK+ GR+RVV
Sbjct: 529 HVTVSAGVAHATEVDSPDALIALADRRLYQAKQGGRDRVV 568


>gi|152997893|ref|YP_001342728.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150838817|gb|ABR72793.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 355

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 117/242 (48%), Gaps = 27/242 (11%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
           YF  FFS+F+   + I   + F   ++P+   E  L++   L   S+  S+ +  +  + 
Sbjct: 126 YFGQFFSVFVPIPLVIIE-YCFPELISPYTDNETRLID---LASTSVVTSIFMLLMMENQ 181

Query: 90  LKELFISYNRISQLSRI-------DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYF 139
            K+  +  +++ QLS         D L+GLLN  +F++S   + E     +I   DID+F
Sbjct: 182 TKKFLLRQSKVEQLSEQLRQLSEQDALTGLLNRRSFVNSFVEWKETKEYFTIAAVDIDFF 241

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEF---AAAALGSSEQEAAIL 195
           KQ+ND +GH  GD+V+   S  L  +      +  R GGEEF      +L  + Q   IL
Sbjct: 242 KQVNDQWGHQYGDEVLIKASTLLAEISKENNALAFRTGGEEFMLMMPYSLNEAYQHIQIL 301

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +        +++ + +GP   +T S+G+AE    E     + R D+ LY AK  GRNR 
Sbjct: 302 HDRF------AEMKLLNGP---VTFSSGLAEVKQDESQDQFLKRVDRLLYQAKNQGRNRT 352

Query: 256 VC 257
           V 
Sbjct: 353 VV 354


>gi|218694243|ref|YP_002401910.1| conserved hypothetical protein; putative membrane protein (8
           predicted transmembrane domain) [Escherichia coli 55989]
 gi|309797949|ref|ZP_07692328.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
 gi|218350975|emb|CAU96679.1| conserved hypothetical protein; putative membrane protein (8
           predicted transmembrane domain) [Escherichia coli 55989]
 gi|308118437|gb|EFO55699.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
          Length = 443

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 100/183 (54%), Gaps = 8/183 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQ 141
           YI  +++  +F   N  + ++  D L+   N   FI SL   S +   S++  DID FK 
Sbjct: 263 YIISTLMYYVFRKLNHANHMAIHDPLTNTYNRRYFIDSLKNISKHHDFSVIMLDIDNFKS 322

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH +GD+VI  ++  +         +GRLGGEEF     G++++    +A  +RK
Sbjct: 323 INDKWGHHMGDQVIVMVTRIIKKSIRKEDILGRLGGEEFGIIIKGNTQKLLLSIAERIRK 382

Query: 202 IIEN--SQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            IE   S+  +S GP   IT+S G   ++  +  P S ++  AD+ALY AK++G+N+V+ 
Sbjct: 383 NIEEQCSEKLLSHGPE-KITVSIGCFTSKENNLSP-SEMLVNADKALYQAKRTGKNKVIT 440

Query: 258 FSD 260
            S 
Sbjct: 441 HSK 443


>gi|226942971|ref|YP_002798044.1| GGDEF domain-containing protein [Azotobacter vinelandii DJ]
 gi|226717898|gb|ACO77069.1| GGDEF domain protein [Azotobacter vinelandii DJ]
          Length = 448

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 100/182 (54%), Gaps = 23/182 (12%)

Query: 88  SILKELFISYNRISQLSR---IDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQ 141
           +IL  L + + R+ +LS+    D L+GL N     + L  + ++    +++  DID+FKQ
Sbjct: 276 AILGSLALLHQRLGKLSQESLTDPLTGLANRRRLQAQLERWQQQRQPFAVIALDIDHFKQ 335

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +NDN GH  GD+V+ +L+ Q+         + R GGEEF     G+S + A  +A  +R 
Sbjct: 336 VNDNHGHESGDRVLQYLARQMNECSRASDLLCRNGGEEFLMLLPGASLEAARQVAERVR- 394

Query: 202 IIENSQINISSG---PSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNR 254
               +++  +SG   PS  +T+SAG+A   H    S     ++ RAD ALY AK +GRNR
Sbjct: 395 ----ARMGAASGEDCPS--VTVSAGVA---HWPDTSASAEEVLKRADAALYQAKHAGRNR 445

Query: 255 VV 256
           VV
Sbjct: 446 VV 447


>gi|209809677|ref|YP_002265216.1| putative GGDEF protein [Aliivibrio salmonicida LFI1238]
 gi|208011240|emb|CAQ81675.1| putative GGDEF protein [Aliivibrio salmonicida LFI1238]
          Length = 322

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 90/172 (52%), Gaps = 11/172 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGH 148
           S  ++S LS+ D L+ L N + + S L    E         SIV FDID+FKQ+ND +GH
Sbjct: 148 SNQQLSNLSKTDGLTNLFNRAYWESCLKKEFETAQVSGAVSSIVIFDIDHFKQVNDTYGH 207

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD VI   SD L          GR GGEEF     G++ ++A      LRK IE + +
Sbjct: 208 TVGDDVIRNASDLLRKTSRNTDICGRYGGEEFTVILPGTNAEQALYFTERLRKRIEKAVV 267

Query: 209 NISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +    ++   +S G+ E    H + +S  +  AD+ALY +K++GRNR   +
Sbjct: 268 -VCEKANVSYQVSLGVCELAPEHTDYLS-WLEMADKALYHSKENGRNRSTVY 317


>gi|330939045|gb|EGH42501.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 418

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 11/167 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +++  D L+GL N  +        I ++    +  S++  DID+FK +ND +GHP 
Sbjct: 255 QKLLEIAHSDPLTGLDNRRSAEHTLERQIPAVSMSGKPFSLIICDIDHFKAVNDRYGHPA 314

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VI  ++  L           R GGEEF      SS ++AA LA  +RK +E+  I  
Sbjct: 315 GDSVITSVAAILKQRIRLLDVAARWGGEEFLILVPDSSLKQAAELAERIRKSVESLVIPE 374

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +      +TIS G+AE    E  +++I RAD+ALY AK+ GRNRV C
Sbjct: 375 TGS----VTISLGVAELSAGETAASLIQRADKALYQAKRLGRNRVEC 417


>gi|294010711|ref|YP_003544171.1| putative diguanylate cyclase [Sphingobium japonicum UT26S]
 gi|292674041|dbj|BAI95559.1| putative diguanylate cyclase [Sphingobium japonicum UT26S]
          Length = 593

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 85/160 (53%), Gaps = 6/160 (3%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           + Q++ +D L+G     AF+  L        +  +  ++  DID+FK +ND +GH  GD+
Sbjct: 428 LQQVAALDSLTGADTRRAFLEKLEEEMLRVRHGARACLLLIDIDHFKAVNDCYGHGAGDR 487

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+A   ++L         +GRLGGEEFA    G+    A+++   LR+++    + I SG
Sbjct: 488 VLAGFVERLRPGLRGGDSIGRLGGEEFAILLSGTDVVRASMICERLREMVTAHPVQIDSG 547

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             I +T SAG+     +     ++  AD+ALY AK SGRN
Sbjct: 548 EVIPVTFSAGLVGLGSQSDAQAVLEAADKALYNAKHSGRN 587


>gi|229158975|ref|ZP_04287032.1| GGDEF domain protein [Bacillus cereus ATCC 4342]
 gi|228624586|gb|EEK81356.1| GGDEF domain protein [Bacillus cereus ATCC 4342]
          Length = 351

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 117/233 (50%), Gaps = 24/233 (10%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91
           SIFI  + F  N++   I + P      +L +++S+V + +  S +  YI+      +L+
Sbjct: 126 SIFIRWIWF--NVYSLSILIVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQ 179

Query: 92  --ELFISYNRISQLSRIDCLSGL-------LNHSAFISSLGSYNEKLSIVFFDIDYFKQI 142
             ELF    ++ Q + ID L+GL       L  +  IS+  + N+ L ++F DID+FK +
Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQLDLEMNRHISNKRTKNDSLCLLFIDIDHFKSV 236

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GHP GD+V+  +   L  +   P    R GGEEFA             +   +R  
Sbjct: 237 NDTYGHPAGDEVLKQIGCILREISPFPDLAFRKGGEEFALLIPQKGLAYGMHMGEQVRAA 296

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E     +  G  I IT+S GI+   +++     I  AD ALY +K++GRN+V
Sbjct: 297 VEKHLFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|158319873|ref|YP_001512380.1| diguanylate cyclase with PAS/PAC sensor [Alkaliphilus oremlandii
           OhILAs]
 gi|158140072|gb|ABW18384.1| diguanylate cyclase with PAS/PAC sensor [Alkaliphilus oremlandii
           OhILAs]
          Length = 541

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 82/158 (51%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N    +S L +  EK       +++   D+D FK +ND +GHPVGD+ +   +
Sbjct: 385 DELTGLYNRHFLVSYLKNEIEKAEAEDQPMTMAILDLDQFKLVNDTWGHPVGDEQLKHTA 444

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             ++ V  +   + R GGEE       ++  +A I+   +R  IEN+Q  I+       T
Sbjct: 445 KTILRVIRSTDLLVRYGGEELVIIMEKTNIDDAKIVLEKIRMAIENNQYPITG----RQT 500

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G AER   E       RADQALY AK  GRNRV+C
Sbjct: 501 VSIGAAERAKSELFVDWYKRADQALYHAKNRGRNRVIC 538


>gi|332312351|gb|EGJ25446.1| GGDEF domain protein [Listeria monocytogenes str. Scott A]
          Length = 383

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 13/167 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q + +D L+GL N   F  +   ++N        LS++  DIDYFK++ND +GH VG+
Sbjct: 210 LQQSTILDPLTGLTNFRHFEKAFEAAFNHATLKKSNLSVIIIDIDYFKRVNDTYGHLVGN 269

Query: 153 KVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            V++  S  L+ + F     + R+GGEEFA      +  E   LA  +R+ +E   + I 
Sbjct: 270 GVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPIV 329

Query: 212 SGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  S+ ITISAGIA    R +  P + ++  ADQALY AK++GRN+V
Sbjct: 330 ASGSV-ITISAGIANYDGRNYPNP-NELLNAADQALYNAKRNGRNQV 374


>gi|320325418|gb|EFW81483.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 305

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 114/220 (51%), Gaps = 20/220 (9%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L P   L   + +  + + + +   + +G++S  +  +L+   N + ++SR D L+GLLN
Sbjct: 82  LNPAVNLHGNMAQIYACLPVLVIYPIFIGWMSHQVTLKLWEHRNILRKISRTDSLTGLLN 141

Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
           H A+   L        + +++  I   DID+FK IND +GH +GD V+  +S+ L+    
Sbjct: 142 HGAWKDLLDLEYVKSQNQHQQCVIALIDIDHFKVINDTYGHLMGDTVLQNISEALMENLR 201

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-----SSGPSIHITISA 222
               +GR GG+EF      +   +A       R+I+E +++ I     S    + +++S 
Sbjct: 202 DSDLIGRCGGDEFCVILPDTHLFQA-------REILERTRLAIDEMTYSLQRDLKVSLSI 254

Query: 223 GIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           GIA    + P  S+ ++ AD+ALY+AK +GRN V    D+
Sbjct: 255 GIAAYSPELPDASSWLHEADKALYLAKSTGRNCVASAQDM 294


>gi|242237803|ref|YP_002985984.1| diguanylate cyclase with hemerythrin-like metal-binding domain
           [Dickeya dadantii Ech703]
 gi|242129860|gb|ACS84162.1| diguanylate cyclase with hemerythrin-like metal-binding domain
           [Dickeya dadantii Ech703]
          Length = 531

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 22/219 (10%)

Query: 48  IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQL---- 103
           I L Y G TPF     +L  + +  +  +T  + L +I+  ++    ++ +R   L    
Sbjct: 166 ILLIYTGATPFS----VLSSSTAQTVTYMTSFMTLLFIANGMI---MMAKDRAEHLNNLM 218

Query: 104 SRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+G  N           +  L  Y   +S++ FD+D+FK++ND FGH VGDKV+ 
Sbjct: 219 ARQDSLTGCWNRIRIQEIARQEMERLERYGYPVSLLMFDLDHFKEVNDKFGHSVGDKVLK 278

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             SD  + +  T    GR GGEEF A    +    A   A  +R  +E      +    +
Sbjct: 279 GFSDTALALLRTTDVFGRWGGEEFVAILPATGFTGAVQTAERIRAALEAQ----TFPGGV 334

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            IT S G++     +   + + RAD ALY AK +GRNR 
Sbjct: 335 KITTSIGVSVCQSTDHWESWLGRADAALYRAKAAGRNRT 373


>gi|217963937|ref|YP_002349615.1| ggdef domain protein [Listeria monocytogenes HCC23]
 gi|217333207|gb|ACK39001.1| ggdef domain protein [Listeria monocytogenes HCC23]
 gi|307571493|emb|CAR84672.1| GGDEF domain membrane protein [Listeria monocytogenes L99]
          Length = 378

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 13/167 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q + +D L+GL N   F  +   ++N        LS++  DIDYFK++ND +GH VG+
Sbjct: 205 LQQSTILDPLTGLTNFRHFEKAFEAAFNHATLKKSNLSVIIIDIDYFKRVNDTYGHLVGN 264

Query: 153 KVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            V++  S  L+ + F     + R+GGEEFA      +  E   LA  +R+ +E   + I 
Sbjct: 265 GVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPIV 324

Query: 212 SGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  S+ ITISAGIA    R +  P + ++  ADQALY AK++GRN+V
Sbjct: 325 ASGSV-ITISAGIANYDGRNYSNP-NELLNAADQALYNAKRNGRNQV 369


>gi|71278036|ref|YP_270580.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71143776|gb|AAZ24249.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 364

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 90/168 (53%), Gaps = 9/168 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S N + +LS +D L+ + N   F       I++     + +S++  DID FK++NDN+GH
Sbjct: 196 SVNELHRLSIMDNLTNIYNRRYFFEMSKKLIATAFREQKPVSLIMLDIDLFKRVNDNYGH 255

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD ++  L  +L  V        R+GGEEF      +S + A ++A  +R  IEN ++
Sbjct: 256 QAGDCILIDLVKELEKVMRKSDVFARIGGEEFTILLNNTSLEGAKVIAEKMRLTIEN-KV 314

Query: 209 NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I +  SI ITIS G++E       I  +  +AD+ LY AK  GRNRV
Sbjct: 315 FIYNTTSIDITISIGVSELNTENTSIEDLYKQADKQLYRAKHKGRNRV 362


>gi|330877341|gb|EGH11490.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 296

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 114/220 (51%), Gaps = 20/220 (9%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L P   L   + +  + + + +   + +G++S  +  +L+   N + ++SR D L+GLLN
Sbjct: 73  LNPAVNLHGNMAQIYACLPVLVIYPIFIGWMSHQVTLKLWEHRNILRKISRTDSLTGLLN 132

Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
           H A+   L        + +++  I   DID+FK IND +GH +GD V+  +S+ L+    
Sbjct: 133 HGAWKDLLDLEYVKSQNQHQQCVIALIDIDHFKVINDTYGHLMGDTVLQNISEALMENLR 192

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-----SSGPSIHITISA 222
               +GR GG+EF      +   +A       R+I+E +++ I     S    + +++S 
Sbjct: 193 DSDLIGRFGGDEFCVILPDTHLFQA-------REILERTRLAIDEMTYSLQRDLKVSLSI 245

Query: 223 GIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           GIA    + P  S+ ++ AD+ALY+AK +GRN V    D+
Sbjct: 246 GIAAYSPELPDASSWLHEADKALYLAKSTGRNCVASAQDM 285


>gi|330447115|ref|ZP_08310765.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491306|dbj|GAA05262.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 536

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 106/203 (52%), Gaps = 22/203 (10%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------ 123
           +LV I+I +SL+L Y       +  I+  RI+ L+  D L+GL+N  AF++         
Sbjct: 341 TLVYIAIILSLVLSYWFARYQLKEHINNQRINVLAHHDGLTGLVNRMAFVNQANLMLESC 400

Query: 124 SYNEKLS-IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA- 181
            ++EK + +++ D+D FK IND +GH  GDKV+  ++  +  VFG    + RLGG+EFA 
Sbjct: 401 MHDEKSACLLYIDLDDFKPINDQYGHATGDKVLIHMASIMRKVFGKQALLARLGGDEFAV 460

Query: 182 ----AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--T 235
               A  L S  Q AA L   L    E         P  +I I + I   C    I+   
Sbjct: 461 LLSSAKHLESPVQYAASLQQLLGCPFE-------VAPDTYIHIHSSIGGCCFNGEITLEE 513

Query: 236 IIYRADQALYVAKKSGRNRVVCF 258
           ++++AD A+Y AK+ G+N+  CF
Sbjct: 514 LMHQADMAMYQAKRKGKNQ-TCF 535


>gi|289435516|ref|YP_003465388.1| GGDEF domain protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171760|emb|CBH28306.1| GGDEF domain protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 357

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 106/198 (53%), Gaps = 15/198 (7%)

Query: 74  ISITISLLLGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-- 128
           I + ISL++G +S  ++  +  S   + +  Q S +D L+ L N   F   +    +K  
Sbjct: 162 IFVVISLVIGVVSAGLMNNMIKSKQLFQKYEQDSTLDYLTQLSNVRQFDEKINHVVDKSG 221

Query: 129 --LSIVFFDIDYFKQINDNFGHPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
             ++++  DID+FK IND +GH  GD   K +AF+  +     G+  F  R GGEEF+  
Sbjct: 222 RQVALLLIDIDFFKNINDTYGHDAGDAILKQLAFILKE-STTDGSEAF--RNGGEEFSLI 278

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQ 242
            L  S +E    A  +RK  E     I SG ++ ITIS G++   ++   S  +++ AD+
Sbjct: 279 LLDYSVEEGNYFAEHIRKETEEHHFLIPSGQTVKITISIGVSGSHNEVTTSERLFKSADE 338

Query: 243 ALYVAKKSGRNRVVCFSD 260
           ALY AK +GRNR VC +D
Sbjct: 339 ALYKAKLTGRNR-VCIAD 355


>gi|307294034|ref|ZP_07573878.1| diguanylate cyclase with PAS/PAC sensor [Sphingobium
           chlorophenolicum L-1]
 gi|306880185|gb|EFN11402.1| diguanylate cyclase with PAS/PAC sensor [Sphingobium
           chlorophenolicum L-1]
          Length = 593

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 6/160 (3%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQINDNFGHPVGDK 153
           + Q + +D L+G     AF+  L     ++      S++  DID+FK +ND  GH  GD+
Sbjct: 428 LQQAAALDSLTGADTRRAFLEKLEEEMSRVRRGGRASLLLIDIDHFKAVNDCHGHGAGDR 487

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+A   ++L         +GRLGGEEFA    G+  + A+++   LR+++    + I SG
Sbjct: 488 VLAGFVERLRPGLRGVDSIGRLGGEEFAILLSGTDVERASMICERLREMVSAHPVRIDSG 547

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             I +T SAG+     +     ++  AD+ALY AK SGRN
Sbjct: 548 EMIRVTFSAGLVSLGSQSDGQAVLDAADKALYNAKHSGRN 587


>gi|303249290|ref|ZP_07335522.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
 gi|302489296|gb|EFL49253.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
          Length = 402

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 14/194 (7%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSL 122
           S+++I +    LL   SG +  EL  + + + + ++ D L+GL N   F+          
Sbjct: 201 SMLLIPLLAFCLLSMTSGRVEAELREARDALRKQAQTDFLTGLPNRRHFLHLAEKALDRA 260

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
               E +S +  D+DYFK IND +GH  GD V+  ++ +L         +GRLGGEEF  
Sbjct: 261 RERGEPVSFIMLDLDYFKDINDTYGHQTGDVVLRAVARRLAEALRDGDEIGRLGGEEFGV 320

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
              G   ++A  +A  LR+ +       +  P  H T++A +        ++ ++ RAD 
Sbjct: 321 LLPGLDGKDAEEVAERLRQAVA------ALSPGGH-TVTASLGMASGATGLNALLARADG 373

Query: 243 ALYVAKKSGRNRVV 256
            LY AK +GRNRVV
Sbjct: 374 CLYAAKGAGRNRVV 387


>gi|283850372|ref|ZP_06367661.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
 gi|283574398|gb|EFC22369.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
          Length = 290

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 67/192 (34%), Positives = 100/192 (52%), Gaps = 18/192 (9%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVF 133
           ++ YI   +L E +    + +   + D L+GL N   F   +   +EK        S++ 
Sbjct: 96  VIKYIKNPVLIEEWQLKEKENSADK-DELTGLFNRRYFNQQMHQESEKFRRFGSPFSLLM 154

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK+ ND  GH  GD+V+  ++D L  +      V R GGEEFA     ++ ++AA
Sbjct: 155 IDIDHFKRFNDTNGHQAGDEVLKIVADVLTRIGRAYDKVTRYGGEEFAVILPLTTRKDAA 214

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-----IIYRADQALYVAK 248
             A  LR  IE  +I  +     H+T+S GIA  C   PI +     ++ RADQALYVAK
Sbjct: 215 NAAERLRTAIEKQRILFAGKDLGHVTVSIGIAT-C---PIDSLDKTMLVQRADQALYVAK 270

Query: 249 KSGRNRVVCFSD 260
           ++ RN VV + D
Sbjct: 271 RT-RNAVVAYCD 281


>gi|262376898|ref|ZP_06070125.1| diguanylate cyclase (GGDEF) domain-containing protein
           [Acinetobacter lwoffii SH145]
 gi|262308243|gb|EEY89379.1| diguanylate cyclase (GGDEF) domain-containing protein
           [Acinetobacter lwoffii SH145]
          Length = 229

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 96/186 (51%), Gaps = 13/186 (6%)

Query: 90  LKELFISYNR--ISQLSRIDCLSGLLNHSAF---ISSLGSYN----EKLSIVFFDIDYFK 140
           L+     YNR     ++  D L+GL N   F      L   N      ++++ FD+D+FK
Sbjct: 31  LQHTLNEYNRQAFENMAHTDSLTGLNNRRCFEYLAQQLVQQNFDQPVPMNLLVFDVDHFK 90

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           QIND +GH +GD+V+  L+            + R GGEEF A    +S  EA  +A  LR
Sbjct: 91  QINDRYGHDIGDQVLQTLALSTRSEMRQHDILARYGGEEFIAFLPETSLDEALKVAERLR 150

Query: 201 KIIENSQINISSGP--SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             IEN  I++ S    S  I+I A I E C  + + T+I +AD ALY AK +GRNRV  +
Sbjct: 151 HNIENIVIDLDSQHRFSFSISIGAAILESCETD-LMTLIKQADIALYQAKANGRNRVEAY 209

Query: 259 S-DIEN 263
             D+E 
Sbjct: 210 DPDLEQ 215


>gi|149909188|ref|ZP_01897845.1| Putative diguanylate cyclase (GGDEF domain) [Moritella sp. PE36]
 gi|149807712|gb|EDM67658.1| Putative diguanylate cyclase (GGDEF domain) [Moritella sp. PE36]
          Length = 446

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 86/176 (48%), Gaps = 9/176 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           KEL ++  R   L+  D ++G+ N  +F+            Y    +++  D+D FKQIN
Sbjct: 263 KELEVALARAEHLATTDVMTGIPNRRSFMDQAEKRHAEWLRYKRPYALLMIDLDTFKQIN 322

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHP GD+V+  ++  L         +GR+GGEEF A  +G SE  A  L   +R  I
Sbjct: 323 DTYGHPAGDQVLISVAAVLQQHTRCEDIIGRIGGEEFCALLVGVSEVGAINLTERIRAEI 382

Query: 204 ENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
               I    G SI +T S G +     +E    ++   DQ LY AK  GRNRV  +
Sbjct: 383 AKLPIEF-GGQSIPVTASFGLVPPESLQEDFDEVLKHGDQMLYQAKNEGRNRVCIY 437


>gi|238791632|ref|ZP_04635270.1| Diguanylate cyclase [Yersinia intermedia ATCC 29909]
 gi|238729248|gb|EEQ20764.1| Diguanylate cyclase [Yersinia intermedia ATCC 29909]
          Length = 300

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 96/185 (51%), Gaps = 14/185 (7%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIV 132
           LLG ++    K L  S   + ++S  D L+GL N        H+ F  S   Y    +++
Sbjct: 116 LLGLVTYRTAKRLAESKEELLRISVRDGLTGLYNRRHWEHQLHNQF-DSCRRYQHGATLI 174

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQE 191
             DID FK IND FGH VGD+ I  L+++L++       VGR GG+EF A    ++ EQ 
Sbjct: 175 LLDIDNFKAINDTFGHAVGDEAITILAEELLLGLRAIDIVGRYGGDEFGAILPNTTAEQT 234

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250
             +L     K+   + +  +  P++ + +SAGIA+  H        +  AD ALY+AK +
Sbjct: 235 REVLTRIQEKL---AALVFTQAPTLQLRVSAGIADYRHDMINYQQWLKAADSALYLAKDN 291

Query: 251 GRNRV 255
           GRNR+
Sbjct: 292 GRNRI 296


>gi|257094145|ref|YP_003167786.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257046669|gb|ACV35857.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 447

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 91/176 (51%), Gaps = 8/176 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           +++E   +  ++ +L+  D L+G+ N   F       I     Y+  + +   D+D+FK 
Sbjct: 245 VMQENETTREQLERLATTDGLTGMFNRRHFLAVAEEEIKRAQRYSRPICVGMADLDFFKH 304

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD V+  +++          +  R GGEEFA     +  +EA  LA  LR+
Sbjct: 305 INDSHGHASGDLVLQSVAEIFARTLRHSDWGCRFGGEEFAFVFPETGLREAHRLAERLRQ 364

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               SQI ++ G  + IT+S G+A+     P+   + RAD ALY AK+ GRNRVV 
Sbjct: 365 SAAASQIALADGSRVDITLSLGLAD-ASSCPLEIALQRADAALYDAKQQGRNRVVT 419


>gi|46908144|ref|YP_014533.1| GGDEF domain-containing protein [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|254825594|ref|ZP_05230595.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J1-194]
 gi|254852814|ref|ZP_05242162.1| GGDEF domain-containing protein [Listeria monocytogenes FSL R2-503]
 gi|254931918|ref|ZP_05265277.1| GGDEF domain-containing protein [Listeria monocytogenes HPB2262]
 gi|255520925|ref|ZP_05388162.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J1-175]
 gi|300763779|ref|ZP_07073776.1| hypothetical protein LMHG_10681 [Listeria monocytogenes FSL N1-017]
 gi|46881414|gb|AAT04710.1| GGDEF domain protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|258606142|gb|EEW18750.1| GGDEF domain-containing protein [Listeria monocytogenes FSL R2-503]
 gi|293583470|gb|EFF95502.1| GGDEF domain-containing protein [Listeria monocytogenes HPB2262]
 gi|293594837|gb|EFG02598.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J1-194]
 gi|300515515|gb|EFK42565.1| hypothetical protein LMHG_10681 [Listeria monocytogenes FSL N1-017]
 gi|328466261|gb|EGF37418.1| GGDEF domain-containing protein [Listeria monocytogenes 1816]
          Length = 378

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 13/167 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q + +D L+GL N   F  +   ++N        LS++  DIDYFK++ND +GH VG+
Sbjct: 205 LQQSTILDPLTGLTNFRHFEKAFEAAFNHATLKKSNLSVIIIDIDYFKRVNDTYGHLVGN 264

Query: 153 KVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            V++  S  L+ + F     + R+GGEEFA      +  E   LA  +R+ +E   + I 
Sbjct: 265 GVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPIV 324

Query: 212 SGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  S+ ITISAGIA    R +  P + ++  ADQALY AK++GRN+V
Sbjct: 325 ASGSV-ITISAGIANYDGRNYPNP-NELLNAADQALYNAKRNGRNQV 369


>gi|167951158|ref|ZP_02538232.1| diguanylate cyclase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 258

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 86/157 (54%), Gaps = 9/157 (5%)

Query: 106 IDCLSGLLNHSAFISS------LGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+G+ N +AF+S+      L S N  +LSI+  D+DYFK+IND +GH VGD V+  +
Sbjct: 100 IDALTGVKNRAAFVSNFNRELDLASRNGTELSIIMLDVDYFKRINDKYGHTVGDMVLKNI 159

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  +     +   + R GGEEF     G+  + A  LA  +RK +E   ++ SS   +  
Sbjct: 160 ALAVEASVRSSDALYRYGGEEFVITLSGTCAEGAYQLAERIRKNVE--ALSFSSPKGLQA 217

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +S G+A     E   T+  RAD ALY AK  GRN+ 
Sbjct: 218 RLSLGVATLQKNESGETLFKRADAALYCAKGQGRNQT 254


>gi|170722393|ref|YP_001750081.1| diguanylate cyclase [Pseudomonas putida W619]
 gi|169760396|gb|ACA73712.1| diguanylate cyclase [Pseudomonas putida W619]
          Length = 469

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 88/169 (52%), Gaps = 13/169 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFI---SSLGSYNEK------LSIVFFDIDYFKQINDNFGHP 149
           R++  + ID L+G L  SAF    ++L    +K      L+++  DID+FK IND  GH 
Sbjct: 292 RLAHQATIDHLTGALTRSAFTRRANALLDSRQKHAQALPLTLMMLDIDHFKSINDRHGHG 351

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+V+   +  L         + R+GGEEF     G + + A+  A  LR+ +++  + 
Sbjct: 352 VGDQVLRQFARTLQDQLHGGELLARMGGEEFVVLLPGLAPERASFTAERLRRAVQDLHLA 411

Query: 210 ISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255
              G    IT+S G+      EP  T   ++ RADQALY AK  GRNRV
Sbjct: 412 KGDG-RPQITVSIGLDGCAGHEPAPTLDELLARADQALYRAKAHGRNRV 459


>gi|300932099|ref|ZP_07147387.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
 gi|300460134|gb|EFK23627.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
          Length = 443

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 100/183 (54%), Gaps = 8/183 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQ 141
           YI  +++  +F   N  + ++  D L+   N   FI SL   S +   S++  DID FK 
Sbjct: 263 YIISTLMYYVFRKLNHANHMAIHDPLTNTYNRRYFIDSLKNISKHHDFSVIMLDIDNFKS 322

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH +GD+VI  ++  +         +GRLGGEEF     G++++    +A  +RK
Sbjct: 323 INDKWGHHMGDQVIVMVTRIIKKSIRKEDILGRLGGEEFGIIIKGNTQKLLLSIAERIRK 382

Query: 202 IIEN--SQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            IE   S+  +S GP   IT+S G   ++  +  P S ++  AD+ALY AK++G+N+V+ 
Sbjct: 383 NIEEQCSKKLLSHGPE-EITVSIGCFTSKENNLSP-SEMLVNADKALYQAKRTGKNKVIT 440

Query: 258 FSD 260
            S 
Sbjct: 441 HSK 443


>gi|94311200|ref|YP_584410.1| diguanylate cyclase [Cupriavidus metallidurans CH34]
 gi|93355052|gb|ABF09141.1| putative signaling protein (GGDEF domain) [Cupriavidus
           metallidurans CH34]
          Length = 237

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 82/153 (53%), Gaps = 6/153 (3%)

Query: 107 DCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+G LN  A I    +      L+++  DID+FK++ND+FGHPVGD VI  ++  L  
Sbjct: 84  DTLTGALNRGAVIDRATAALARGSLALIVIDIDHFKRLNDDFGHPVGDAVICGVTACLKD 143

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAG 223
                  +GR+GGEEFAA     +   AA LA+ +R+ I   +      P +  +T S G
Sbjct: 144 TVRMEGVIGRMGGEEFAALLPDFTIDAAATLADQMRQAIAGHRF---PAPVNREVTASFG 200

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++      P      RAD+ALY AK+ GRNRV 
Sbjct: 201 VSWSPQGRPFEHAYGRADEALYEAKRGGRNRVT 233


>gi|269963603|ref|ZP_06177926.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831616|gb|EEZ85752.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 539

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 101/198 (51%), Gaps = 12/198 (6%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------I 119
           E   L+ + + +S++L Y         FI   RI  L+  D L+GLLN +AF       I
Sbjct: 339 ERKWLMQVGVVLSIILAYFIARFQLRAFIDNQRIHHLAHHDSLTGLLNRAAFQAGATETI 398

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
           S      +K  +V+ D+D FK IND +GH  GDK +  ++  +  +FG+   + RLGG+E
Sbjct: 399 SQSVKAGKKACLVYLDLDGFKFINDEYGHAAGDKTLEHVASVMNRIFGSKALLARLGGDE 458

Query: 180 FAAAALGSSE--QEAAILANDLRKIIENSQINISSGPSIHITIS-AGIAERCHKEPISTI 236
           F A  L S E  Q     A  L ++I++  I +       +T S  G   +     +  +
Sbjct: 459 F-AILLSSQEHMQSPEHYAASLIQLIQDP-IEVLPDTFHQVTTSIGGCYTKGQDCTLEEL 516

Query: 237 IYRADQALYVAKKSGRNR 254
           +++AD A+Y AKK+G+NR
Sbjct: 517 MHQADMAMYEAKKAGKNR 534


>gi|319424657|gb|ADV52731.1| diguanylate cyclase [Shewanella putrefaciens 200]
          Length = 486

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 107/211 (50%), Gaps = 23/211 (10%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLL 113
           L  F+G       NL+L +I +T+ +L  +IS   L      Y R +  ++  D L+G  
Sbjct: 288 LNTFWG-------NLALSLI-VTMGIL--FISNMTLGR----YQRKLEMMASTDKLTGAA 333

Query: 114 NHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N   F        +K       +SI+  DID+FK++ND++GH +GD V+  +++ L  + 
Sbjct: 334 NRQVFEEYFRQALDKAKLTQSPISILLLDIDHFKKVNDSYGHGMGDLVLKTMANMLRSLL 393

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                + R GGEEF           AA  A  +R +I   +I + +G  I IT S G+AE
Sbjct: 394 QPQDILCRWGGEEFLILLPEMDLSRAAEFAEQIRDLISLREIKV-NGLHISITASIGVAE 452

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +EP   +I RAD ALY AK +GRN+VV 
Sbjct: 453 HQAQEPAEDLIKRADLALYQAKAAGRNQVVL 483


>gi|73541842|ref|YP_296362.1| GGDEF [Ralstonia eutropha JMP134]
 gi|72119255|gb|AAZ61518.1| GGDEF [Ralstonia eutropha JMP134]
          Length = 411

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 12/171 (7%)

Query: 94  FISYNRISQL----SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
            ++++R+ ++    +  D L+GLL  +AF  +L +       + + L++ F D+D+FK I
Sbjct: 214 LMAHDRLRRMLEHKASHDDLTGLLARTAFWQALEAASTHVDRHGKPLTVAFIDLDHFKAI 273

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD V+   +  L    G    +GRLGGEEFA     ++ +    ++  L   
Sbjct: 274 NDVYGHLAGDSVLRHFAGLLRKTAGPEDIIGRLGGEEFAVVMPDTTIERGRAVSMHLSTT 333

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           + N+    S   +I  T S G+A+R   E + +++ RADQALY AK+ GRN
Sbjct: 334 VRNTPCP-SEPDAIAYTASIGMAQREPGESVDSLMRRADQALYDAKQRGRN 383


>gi|91780057|ref|YP_555265.1| diguanylate cyclase [Burkholderia xenovorans LB400]
 gi|91692717|gb|ABE35915.1| Putative diguanylate cyclase (GGDEF domain) [Burkholderia
           xenovorans LB400]
          Length = 312

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 104/202 (51%), Gaps = 11/202 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           L+    +V + +TIS +  ++S  + +E   +  ++ + +  D L+G+ N   F + L  
Sbjct: 113 LMREREVVAVCVTISDVT-HVS-IVQREREEAVAKLQEYADRDGLTGIANRRFFETRLRD 170

Query: 125 -------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   +S++ FD+D+FK+IND FGH VGD V+  ++ ++  V       GR GG
Sbjct: 171 EYTRWQRYGGDMSMLLFDLDHFKKINDQFGHGVGDTVLRVMAQRVAEVVRAQDTFGRFGG 230

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTI 236
           EEFA     +   +A  +A  +R  I ++ + +  G S+ +T S G A  R        +
Sbjct: 231 EEFALLLPCTPLDDAMRVAEKIRCTIADTPVEV-QGTSVPVTASVGGACARVGVPSYDVL 289

Query: 237 IYRADQALYVAKKSGRNRVVCF 258
           I  AD ALY AK+ GRNR V F
Sbjct: 290 INEADAALYSAKRQGRNRSVAF 311


>gi|332094532|gb|EGI99578.1| diguanylate cyclase domain protein [Shigella boydii 5216-82]
          Length = 371

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 104/201 (51%), Gaps = 23/201 (11%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIVDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII--YR 239
               G    E+AI A  LR   E + + + + P + + IS G+A      P++  +  YR
Sbjct: 295 VIMSGMP-AESAITAM-LRVHEELNTLRLPNTPQVTLRISVGVA------PLNPQMSHYR 346

Query: 240 -----ADQALYVAKKSGRNRV 255
                AD ALY AKK+GRNR 
Sbjct: 347 EWLKSADLALYKAKKAGRNRT 367


>gi|288958189|ref|YP_003448530.1| hypothetical protein AZL_013480 [Azospirillum sp. B510]
 gi|288910497|dbj|BAI71986.1| hypothetical protein AZL_013480 [Azospirillum sp. B510]
          Length = 516

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 104/212 (49%), Gaps = 17/212 (8%)

Query: 56  TPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH 115
           +PF+ L    V    +  +++ ++ +  Y     ++E       +  ++  D L+G+ N 
Sbjct: 311 SPFWTL--FTVNQAVIQGVAVNLAWIYDYTERRSMEEA------LRDMASRDPLTGIYNR 362

Query: 116 SAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            +F+    S       ++E LS+   D+D+FK+IND FGH  GD  +  ++     +   
Sbjct: 363 RSFMEMARSQLARAHRFHEPLSVFVLDVDHFKRINDTFGHATGDDALRMVAAGCQAILRE 422

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-R 227
              +GRLGGEEF     G++  E+ ++A  +R+ +    I    G +  +T+S GIA   
Sbjct: 423 YDILGRLGGEEFVVVLPGATADESRVVAERVRRHLARMPIEAPDG-TFRLTVSIGIAGLE 481

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              + +   I+RAD ALY AK  GRNRV  F 
Sbjct: 482 GATDTLERAIHRADLALYRAKHLGRNRVTVFE 513


>gi|187920506|ref|YP_001889538.1| diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans
           PsJN]
 gi|187718944|gb|ACD20167.1| diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans
           PsJN]
          Length = 777

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 109/222 (49%), Gaps = 14/222 (6%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR 99
            +V+F A  F    G    + +E ++   + +V I +  S++  +      +  F+  ++
Sbjct: 137 GSVLFYATAFALLFGQPLTHDVETVVW--MWIVAIGVPTSVVFHFGFYRFRRNHFLLESQ 194

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++QL+  D L+GL N  AF+          + + + S +F DID FK +ND FGH +GD 
Sbjct: 195 LAQLAATDPLTGLQNRRAFVKQAERRLDTVTPDTRTSAIFLDIDNFKSLNDRFGHAIGDH 254

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  ++  L+        V R+GGEEF A  LG     A  +A  LR  I   +      
Sbjct: 255 ALYQVAQVLMEEISADDSVSRIGGEEF-ALLLGDGLTGALHVAERLRHAIAAIE-----R 308

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           P   +T S G+AE    E I  ++ RAD+AL  AK SGRNRV
Sbjct: 309 PDGRLTASFGVAEHRSGESIMVLLDRADEALLRAKHSGRNRV 350


>gi|190574856|ref|YP_001972701.1| putative transmembrane GGDEF domain regulatory protein
           [Stenotrophomonas maltophilia K279a]
 gi|190012778|emb|CAQ46407.1| putative transmembrane GGDEF domain regulatory protein
           [Stenotrophomonas maltophilia K279a]
          Length = 481

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 97/189 (51%), Gaps = 17/189 (8%)

Query: 78  ISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128
           I  LLGY   S+L ++ I   R  +  L+R D L+GL N  +F  SL   + +       
Sbjct: 280 IGSLLGYALRSVLSQIEIQRQRDELETLARRDPLTGLGNRRSFDESLDRAHRRARRQDQG 339

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAALG 186
           L+++  DID+FK++ND +GHP GD+ +  ++  L   +  G  +   R GGEEF AA   
Sbjct: 340 LAVLMIDIDHFKRLNDTYGHPEGDRRLRAVAGILDGCLQRGDDLLA-RYGGEEFIAALPS 398

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQAL 244
                A  L   LR  +E + +     P   +TIS G+A +   E      ++ RADQAL
Sbjct: 399 PDATHALGLGERLRASVEAAAL---PAPVATVTISIGVAWQAPGEDGDPRGLVERADQAL 455

Query: 245 YVAKKSGRN 253
           Y AK +GRN
Sbjct: 456 YRAKHAGRN 464


>gi|146311325|ref|YP_001176399.1| hypothetical protein Ent638_1669 [Enterobacter sp. 638]
 gi|145318201|gb|ABP60348.1| diguanylate cyclase [Enterobacter sp. 638]
          Length = 298

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 84/153 (54%), Gaps = 8/153 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GL        S  S N     E L ++  D+D+FK+INDN+GH +GD V+  L+  
Sbjct: 132 DALTGLPLRRILDESYDSMNKALGDEGLYLLLLDVDHFKKINDNYGHLIGDAVLRSLALN 191

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L         V R GGEEF       S++EA   A  LR++IE S+  +S G  + IT S
Sbjct: 192 LENNIRRAESVYRYGGEEFIILLQAHSDREATEAAERLRRVIETSET-VSGGHRVKITFS 250

Query: 222 AGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           +G+  R H+ E +  ++ RAD ALY  K+SGRN
Sbjct: 251 SGLT-RVHRGETLREVLERADVALYKGKQSGRN 282


>gi|212633335|ref|YP_002309860.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212554819|gb|ACJ27273.1| GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 624

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 104/180 (57%), Gaps = 11/180 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEK----LSIVFFDIDYFKQI 142
           L+EL  +  ++++ + ID L+G+ N ++F   I + G  + +    ++I+  DID+FK I
Sbjct: 442 LRELNEANQKLTEQTTIDSLTGVKNRNSFDKRIVAEGRISRRQQTPMAILMLDIDHFKSI 501

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD+ +  ++ +L      P   V R GGEEFA     ++++ A  +A  +RK
Sbjct: 502 NDTYGHLAGDQALRVIAVELKQKLKRPTDLVSRFGGEEFAIILPNTNQEGALQVAESIRK 561

Query: 202 IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFS 259
            I    I+   G +I +T+S G++ E    E  +T++  RAD+ALY AK  GRNRV+ ++
Sbjct: 562 AIFELPISW-GGVTIPLTVSIGVSVEIVSSEQHTTLLLERADKALYRAKNEGRNRVMLYT 620


>gi|320327441|gb|EFW83454.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 305

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 114/220 (51%), Gaps = 20/220 (9%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L P   L   + +  + + + +   + +G++S  +  +L+   N + ++SR D L+GLLN
Sbjct: 82  LNPAVNLHGNMAQIYACLPVLVIYPIFIGWMSHQVTLKLWEHRNILRKISRTDSLTGLLN 141

Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
           H A+   L        + +++  I   DID+FK IND +GH +GD V+  +S+ L+    
Sbjct: 142 HGAWKDLLDLEYVKSQNQHQQCVIALIDIDHFKVINDTYGHLMGDTVLQNISEALMENLR 201

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-----SSGPSIHITISA 222
               +GR GG+EF      +   +A       R+I+E +++ I     S    + +++S 
Sbjct: 202 DSDLIGRCGGDEFCVILPDTHLFQA-------REILERTRLAIDEMTYSLQRDLKVSLSI 254

Query: 223 GIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           GIA    + P  S+ ++ AD+ALY+AK +GRN V    D+
Sbjct: 255 GIAAYSPELPDASSWLHEADKALYLAKSTGRNCVASAQDM 294


>gi|209519429|ref|ZP_03268226.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. H160]
 gi|209500168|gb|EEA00227.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. H160]
          Length = 316

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 105/202 (51%), Gaps = 11/202 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           L+    +V + +TIS +  ++S  + +E   +  ++ + +  D L+G+ N   F + L  
Sbjct: 113 LMRGREVVAVCVTISDVT-HVS-IVQREREEAVAKLQEYANRDGLTGIANRRFFEARLRD 170

Query: 125 -------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   +S++ FD+D+FK+IND FGH VGD V+  ++ ++  V       GR GG
Sbjct: 171 EFTRWQRYGGDMSMLLFDLDHFKKINDQFGHGVGDTVLRVMAQRVAGVVRAQDTFGRFGG 230

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS-AGIAERCHKEPISTI 236
           EEFA     +   +A ++A  +R +IE + + +  G S+ +T S  G A R        +
Sbjct: 231 EEFALLLPCTPLDDAMLVAEKIRCVIEETPVEL-IGTSVPVTASLGGAAARDGVPAYDVL 289

Query: 237 IYRADQALYVAKKSGRNRVVCF 258
           I  AD ALY AK+ GRN  V F
Sbjct: 290 INEADAALYRAKRQGRNCAVAF 311


>gi|330982934|gb|EGH81037.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 267

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 11/167 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +++  D L+GL N  +        I ++    +  S++  DID+FK +ND +GHP 
Sbjct: 104 QKLLEIAHSDPLTGLDNRRSAEHTLERQIPAVSMSGKPFSLIICDIDHFKAVNDRYGHPA 163

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VI  ++  L           R GGEEF      SS ++AA LA  +RK +E+  I  
Sbjct: 164 GDSVITSVAAILKQRIRLLDVAARWGGEEFLILVPDSSLKQAAELAERIRKSVESLVIPE 223

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +      +TIS G+AE    E  +++I RAD+ALY AK+ GRNRV C
Sbjct: 224 TGS----VTISLGVAELSAGETAASLIQRADKALYQAKRLGRNRVEC 266


>gi|170077470|ref|YP_001734108.1| PleD protein [Synechococcus sp. PCC 7002]
 gi|169885139|gb|ACA98852.1| PleD protein [Synechococcus sp. PCC 7002]
          Length = 516

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 97/178 (54%), Gaps = 14/178 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-----YNEK--LSIVFFDIDYFKQINDNFGHPV 150
             + +L  +D L+ + N   F   L +     Y E+  L+++ FD+DYFK+ ND++GH  
Sbjct: 335 QELQKLVHLDGLTQIANRRCFNQRLTAEWHRLYREQKPLALILFDVDYFKRYNDSYGHQQ 394

Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI- 208
           GD+ +  ++  +  +   P   V R GGEEF      ++++ A I+A  +R+ +   QI 
Sbjct: 395 GDECLIQIAQAVKHLLKRPADLVARYGGEEFVVVLPNTTQEGATIVAKRIRRTVLELQIA 454

Query: 209 -NISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            N +      +T+S G+     +  ++P+ T + +ADQALY+AK+ GRNR+V   + E
Sbjct: 455 HNATEINEAIVTVSLGVVSGIPQSQEKPL-TFVKKADQALYLAKQQGRNRIVVAGESE 511


>gi|197262416|ref|ZP_03162490.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197240671|gb|EDY23291.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 570

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+ +  T  LL+ + +   ++K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 -YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            Y E     S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY AK+SGRNR +C SD
Sbjct: 542 LADKRLYYAKQSGRNR-ICASD 562


>gi|296158639|ref|ZP_06841469.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. Ch1-1]
 gi|295891207|gb|EFG70995.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. Ch1-1]
          Length = 312

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 104/202 (51%), Gaps = 11/202 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           L+    +V + +TIS +  ++S  + +E   +  ++ + +  D L+G+ N   F + L  
Sbjct: 113 LMREREVVAVCVTISDVT-HVS-IVQREREEAVAKLQEYADRDGLTGIANRRFFETRLRD 170

Query: 125 -------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   +S++ FD+D+FK+IND FGH VGD V+  ++ ++  V       GR GG
Sbjct: 171 EYTRWQRYGGDMSMLLFDLDHFKKINDQFGHGVGDTVLRVMAQRVAEVVRAQDTFGRFGG 230

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTI 236
           EEFA     +   +A  +A  +R  I ++ + +  G S+ +T S G A  R        +
Sbjct: 231 EEFALLLPCTPLDDAMRVAEKIRCTIADTPVEV-QGTSVPVTASVGGACARVGVPSYDVL 289

Query: 237 IYRADQALYVAKKSGRNRVVCF 258
           I  AD ALY AK+ GRNR V F
Sbjct: 290 INEADAALYSAKRQGRNRSVAF 311


>gi|170690121|ref|ZP_02881288.1| diguanylate cyclase [Burkholderia graminis C4D1M]
 gi|170144556|gb|EDT12717.1| diguanylate cyclase [Burkholderia graminis C4D1M]
          Length = 392

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 7/167 (4%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           ++ R+ Q S+ D L+ L N   F      +   GS N  LS++  D+D+FK++ND +GH 
Sbjct: 213 THGRLLQESQTDFLTRLGNRRWFFEEGERVLGEGSKNRPLSLLALDLDHFKKLNDRYGHH 272

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+   ++    V G    + R+GGEEFAA   G  E  A  +   + +    +  +
Sbjct: 273 AGDEVLRSFAEVARRVVGHEAVLARIGGEEFAALLPGHDEARAKAVGEAIVECFAQTVSH 332

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             +G  +  T+S G+A   H  +P++ ++  AD ALY AK  G NRV
Sbjct: 333 RVNGAEVRATVSIGLAHSTHAGQPLAELLSAADGALYRAKSLGGNRV 379


>gi|209918648|ref|YP_002292732.1| hypothetical protein ECSE_1457 [Escherichia coli SE11]
 gi|209911907|dbj|BAG76981.1| conserved hypothetical protein [Escherichia coli SE11]
          Length = 443

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 100/183 (54%), Gaps = 8/183 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQ 141
           YI  +++  +F   N  + ++  D L+   N   FI SL   S +   S++  DID FK 
Sbjct: 263 YIISTLMYYIFRKLNHANHMAIHDPLTNTYNRRYFIDSLKNISKHHDFSVIMLDIDSFKS 322

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH +GD+VI  ++  +         +GRLGGEEF     G++++    +A  +RK
Sbjct: 323 INDKWGHHMGDQVIVMVTRIIKKSIRKEDILGRLGGEEFGIIIKGNTQKLLLSIAERIRK 382

Query: 202 IIEN--SQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            IE   S+  +S GP   IT+S G   ++  +  P S ++  AD+ALY AK++G+N+V+ 
Sbjct: 383 NIEEQCSEKLLSHGPE-KITVSIGCFTSKENNLSP-SEMLVNADKALYQAKRTGKNKVII 440

Query: 258 FSD 260
            S 
Sbjct: 441 HSK 443


>gi|332534870|ref|ZP_08410692.1| GGDEF family protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035669|gb|EGI72158.1| GGDEF family protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 324

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 90/180 (50%), Gaps = 25/180 (13%)

Query: 104 SRIDCLSGLLNHSAFISSL---------------GSYNEKLSIVFFDIDYFKQINDNFGH 148
           SR+D L+ LLN   F   +                +   +  +   DID FK INDN+GH
Sbjct: 141 SRLDPLTELLNRQTFDKKVIEIVSGNGFLLPRNDNNKKRRWYLAIADIDNFKNINDNYGH 200

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+VI  ++  L   F    +V R GGEEFA      +E +A +  N LR       +
Sbjct: 201 VIGDEVILLVARLLKNNFRIEDYVFRYGGEEFAMLFQAKTEADAHVALNRLR-------L 253

Query: 209 NISSGPSIHI---TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           N++  P   I   TIS G  E    + +S+I+ +AD ALY +K +GRNRV  +S++E N 
Sbjct: 254 NVAQYPFPQIGQLTISIGFLELVSIDTVSSIVNQADLALYYSKNTGRNRVTSYSELEVNN 313


>gi|115380209|ref|ZP_01467234.1| gaf domain/ggdef domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115362792|gb|EAU62002.1| gaf domain/ggdef domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 668

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 92/176 (52%), Gaps = 9/176 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           + ++ +++  D L+GLLNH  F       ++    Y  KLS++  DID+FK +ND +GHP
Sbjct: 485 FEQMERMATTDGLTGLLNHRTFQSKADEHLAQARRYQRKLSLILTDIDHFKSVNDTYGHP 544

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  L         V R GGEEFA     +  + A ++A  +R+ ++     
Sbjct: 545 TGDAVLKGVAKILRDKARDTDIVARYGGEEFAIIMPETDAKGALVIAERIREAVKAEVFQ 604

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
              GP + +T+S GI+    H      +I  +DQ LY AK++GRN+ V  + ++  
Sbjct: 605 TEMGP-LKVTLSLGISTGPDHGYDKQHLIDLSDQCLYHAKRNGRNQSVTVAQMQGG 659


>gi|84387873|ref|ZP_00990887.1| hypothetical protein V12B01_15306 [Vibrio splendidus 12B01]
 gi|84377219|gb|EAP94088.1| hypothetical protein V12B01_15306 [Vibrio splendidus 12B01]
          Length = 487

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 110/215 (51%), Gaps = 22/215 (10%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYN--RISQLSRIDCLSGLLNHSAF 118
           LE  L  N SL+ IS+ ++L++  +S  I+  L++ +   +I  ++ +D L+GL +  +F
Sbjct: 276 LEQELNRNHSLLFISL-MALVVSLLSIIIVLVLYLRHRHLKILDVASLDYLTGLPSRRSF 334

Query: 119 ISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           I  L     + S        ++  DID+FK++ND +GH  GD+VI  ++  L        
Sbjct: 335 IEQLKLKIAQRSPYPLTNVGVILLDIDHFKRVNDQYGHAQGDRVICEVAKSLKRFVNRRR 394

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            + R GGEEF        E+E   L+ +LR+ +E  Q  +S      +TISAG    CH 
Sbjct: 395 LIARYGGEEFILVTFDCDERELFELSEELRRSVEQLQGLVSP-----VTISAGC---CHD 446

Query: 231 EP---ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
                I T I +AD+ALY AK+ GRN    +   E
Sbjct: 447 RALTDIETAIDKADKALYQAKERGRNNTQTYQKNE 481


>gi|300867659|ref|ZP_07112306.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
 gi|300334370|emb|CBN57478.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
          Length = 358

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 10/171 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSA----FISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           +L++    + ++S  D L+ + N  A        +    E++ I+  DID FKQINDN+G
Sbjct: 192 KLYLERFHLMEISEKDALTSVFNRGAGERILQDLINQSEEQIGIILCDIDRFKQINDNYG 251

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD+V+  ++            + R GGEEF     G  E+E   +A  LR  I + Q
Sbjct: 252 HLMGDRVLQVIAQSCQNRLREKDILIRWGGEEFLIVVTGDDEKELKQMAEHLRLAIADRQ 311

Query: 208 INISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I     P +  +T S G+A R   E I  +  RAD+ALY AK  GRN+V+ 
Sbjct: 312 I-----PEVGKVTASFGVALRQPDEDIVELFARADRALYRAKGYGRNQVIA 357


>gi|62180561|ref|YP_216978.1| hypothetical protein SC1991 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224583515|ref|YP_002637313.1| hypothetical protein SPC_1728 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|75482657|sp|Q57N14|YEDQ_SALCH RecName: Full=Cellulose synthesis regulatory protein
 gi|62128194|gb|AAX65897.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224468042|gb|ACN45872.1| hypothetical protein SPC_1728 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322715037|gb|EFZ06608.1| Cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 570

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+ +  T  LL+ + +   ++K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 -YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            Y E     S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY AK+SGRNR +C SD
Sbjct: 542 LADKRLYYAKQSGRNR-ICASD 562


>gi|42528082|ref|NP_973180.1| GGDEF domain-containing protein [Treponema denticola ATCC 35405]
 gi|41819127|gb|AAS13099.1| GGDEF domain protein [Treponema denticola ATCC 35405]
          Length = 1431

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 4/136 (2%)

Query: 126  NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            N   SI+ +D+D FK++ND FGH +GD V+   +   + V      +GR+GGEEF     
Sbjct: 1126 NSSFSILMYDLDKFKKVNDTFGHQMGDTVLKATAKTALGVLKKGQILGRVGGEEFVILLP 1185

Query: 186  GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQAL 244
             + +++A I+A  +RK +E    +    P+I ITIS GIA    H      ++ + DQAL
Sbjct: 1186 NTEKKQALIIAEKIRKQVEALHFD---NPAIRITISMGIAVFPTHGTAEKDLLSKVDQAL 1242

Query: 245  YVAKKSGRNRVVCFSD 260
            Y AK  GRN+ V + +
Sbjct: 1243 YAAKNWGRNQTVVWEE 1258


>gi|251788911|ref|YP_003003632.1| diguanylate cyclase [Dickeya zeae Ech1591]
 gi|247537532|gb|ACT06153.1| diguanylate cyclase [Dickeya zeae Ech1591]
          Length = 491

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 96/192 (50%), Gaps = 15/192 (7%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124
           + +S+ + LL+    G+  +       R+  ++  D L+GL+N  AF            +
Sbjct: 305 ITVSVAMLLLIWLTIGAYQR-------RLELMATTDKLTGLMNRQAFEYVFRTLRIKQST 357

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
            +   SI+  D+DYFK+IND +GH VGD+V+   +  +           R GGEEF    
Sbjct: 358 QHRTFSIILIDLDYFKKINDQYGHHVGDRVLVRTARLIQRTIRKTDSACRWGGEEFVLLL 417

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
              S  +A  +A  +R+ I  + ++      I++TIS GIAE    E I  ++ RAD AL
Sbjct: 418 ADCSRSQAHFIAEKIRRAIRFALVS-HQHQVINLTISCGIAESHPGESIDHLVQRADNAL 476

Query: 245 YVAKKSGRNRVV 256
           Y AK+ GR++ V
Sbjct: 477 YQAKRQGRDQAV 488


>gi|167625701|ref|YP_001675995.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167355723|gb|ABZ78336.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 327

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 107/222 (48%), Gaps = 23/222 (10%)

Query: 57  PFYGLEYILVENLSLVIIS------ITISLLLGYISGSILKELFI--SYNRISQLSRIDC 108
           P  G    + +N++L+ +S        IS+++  ++   + +L +  +  R+  LS+ID 
Sbjct: 110 PITGRADFMYQNVTLLPLSSLTGEVTHISMIVYDVTDVAINKLQLKSANERLEYLSQIDG 169

Query: 109 LSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           LS L N   +   L         Y  + S+V  DID+FK IND +GH  GD+VI  +S  
Sbjct: 170 LSQLFNRRHWEQCLQKEFDRHTRYGSETSLVMLDIDHFKAINDTYGHQAGDRVIQNVSHT 229

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +          GR GGEEF      +    A   A  LRK IE  +I +     I +TIS
Sbjct: 230 IKKSLRETDCAGRYGGEEFGVVLANTPAVNARFFAERLRKKIEKLEI-LYEEQLIKVTIS 288

Query: 222 AGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVVCFS 259
            GI   C  +P      T + +ADQALY AK++GRN  + + 
Sbjct: 289 IGI---CDIKPEVNDSDTWLSQADQALYQAKEAGRNCTIAYE 327


>gi|291060338|gb|ADD73073.1| ggdef domain-containing protein [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 347

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 112/214 (52%), Gaps = 24/214 (11%)

Query: 56  TPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS-RIDCLSGLLN 114
           TP+   + I+++   L  I+I  +LLL   +  ++ ++ + +   + L+ ++D LS    
Sbjct: 151 TPYD--QSIIMDIAQLAAIAINNALLLEQATTDMMTQMKLKHYFFAMLTAKLDTLST--- 205

Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
                       E +S++  DID+FKQIND  GH  GD V+  +++ +           R
Sbjct: 206 -----------QETVSVLMLDIDFFKQINDTHGHLCGDLVLQHVAEIIRSCTRPCDIASR 254

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERC-HKEP 232
            GGEEF      +S +EAA +A  +R  +   Q+ I     SI +T+SAG+AE   ++E 
Sbjct: 255 YGGEEFMLMLSNNSSREAAHVAERIR--VATEQLTIPYHEVSIRVTVSAGVAEYLPNQES 312

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             T+I RAD ALY AK++GRN+VV     E N C
Sbjct: 313 AETLIKRADSALYQAKQNGRNKVVIS---EKNMC 343


>gi|270263695|ref|ZP_06191964.1| diguanylate cyclase [Serratia odorifera 4Rx13]
 gi|270042579|gb|EFA15674.1| diguanylate cyclase [Serratia odorifera 4Rx13]
          Length = 354

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 97/185 (52%), Gaps = 14/185 (7%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVF 133
           LLG ++    K L      + ++S  D L+GL N   +         S   Y    +++ 
Sbjct: 167 LLGLVTYRTAKRLAQKKQELLRISMRDGLTGLYNRRHWEHLLHHQFDSCRRYQHTATLIL 226

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK IND FGH +GD+ +A L+++L++       VGR GG+EF A    +S ++A+
Sbjct: 227 MDVDRFKTINDTFGHALGDEALAVLAEELLIGLRAVDIVGRYGGDEFGAVLPNTSAEQAS 286

Query: 194 ILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKS 250
           I    L++I E  + I     P + + ISAGIA+  H +    + +   AD ALY AK +
Sbjct: 287 I---ALQRIQERLNDIIFREAPQLRLNISAGIAD-YHGDMGGYLDWLKAADNALYRAKNN 342

Query: 251 GRNRV 255
           GRNR+
Sbjct: 343 GRNRL 347


>gi|296134962|ref|YP_003642204.1| diguanylate cyclase with PAS/PAC sensor [Thiomonas intermedia K12]
 gi|295795084|gb|ADG29874.1| diguanylate cyclase with PAS/PAC sensor [Thiomonas intermedia K12]
          Length = 752

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/176 (36%), Positives = 89/176 (50%), Gaps = 17/176 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
           + +  L+  D L+G+ N   F++                 ++  DID FKQIND FGH V
Sbjct: 573 SELRNLAYTDTLTGIPNRRYFLARAALELRRAQREGSPFVVLALDIDRFKQINDRFGHQV 632

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VI   +   +     P   GRLGG+EFA     ++ Q A  +A  LR  I+ +    
Sbjct: 633 GDAVIRCFAQTCMQQLRGPDLCGRLGGDEFAILLPQTTRQVAFDVAQRLRLSIQEASCLP 692

Query: 211 SSGPS-IHITISAGIAERCHKEPIST------IIYRADQALYVAKKSGRNRVVCFS 259
           SS P  + +T S GIAE     P ST      ++ RADQALY AK++GRNRV  ++
Sbjct: 693 SSAPDGLTLTTSIGIAEFL---PTSTLMDADELLDRADQALYRAKQAGRNRVEIWT 745


>gi|94263138|ref|ZP_01286956.1| GGDEF [delta proteobacterium MLMS-1]
 gi|93456509|gb|EAT06623.1| GGDEF [delta proteobacterium MLMS-1]
          Length = 525

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 127/260 (48%), Gaps = 17/260 (6%)

Query: 13  LCHEKNLESFSP--HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           L H++  +   P  H+F     +    +   ++ I ++    +G    Y  +  LV    
Sbjct: 262 LRHDRRFQQQLPDEHSFTWKVMVGNQPWAVNLLRIHDVEQRPVGYLISYAPDNFLVALRK 321

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-- 128
             I+S+ ++ LL    G +   L  S + + +L+  D L+GL N  +F+  LG   E+  
Sbjct: 322 EFIVSLLVAWLLAAGLGLLFVLLARSRDEMVRLATTDPLTGLANRRSFMDRLGLEQERFK 381

Query: 129 -----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                + ++  DID+FK++ND  GH VGD+V+   +  +         VGRLGGEEFA  
Sbjct: 382 RFGNPVGLLMLDIDFFKKVNDTHGHHVGDEVLGQFATLMRQNLRHVDLVGRLGGEEFAVV 441

Query: 184 ALGSSEQEAAILANDLR-KIIENSQINI------SSGPSIHITISAGIAE-RCHKEPIST 235
             G+  +     AN LR  + E  Q  +      +S   ++IT+S G+A  +   + +  
Sbjct: 442 LPGADLEGTLHFANRLRCGVGERLQGEVCGHRFSTSAGILNITVSIGVAVLQPGDDGVEP 501

Query: 236 IIYRADQALYVAKKSGRNRV 255
           ++ RAD ALY AK++GRNR+
Sbjct: 502 VLRRADTALYRAKENGRNRI 521


>gi|300864101|ref|ZP_07109000.1| Response regulator receiver modulated diguanylate cyclase
           [Oscillatoria sp. PCC 6506]
 gi|300337917|emb|CBN54146.1| Response regulator receiver modulated diguanylate cyclase
           [Oscillatoria sp. PCC 6506]
          Length = 315

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 97/196 (49%), Gaps = 12/196 (6%)

Query: 72  VIISITISLLLGYISGSI---LKELFISYNRISQLSRIDCLSGLLNH-------SAFISS 121
           +++ +   L L Y+   +   L+E       +  L+  D L+G+ N         A I  
Sbjct: 118 LLVRVRTHLELKYMREQLKKSLQEQAQLTKELQNLANTDPLTGVWNRRYLLTLCEAEIER 177

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              YN   S++  D+D FKQIND +GH VGD+V+  ++  +        F GR GGEEF 
Sbjct: 178 ACRYNHLFSVLMLDLDRFKQINDIYGHSVGDEVLIGMTKIVKNSLRKVDFWGRFGGEEFV 237

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRA 240
                ++   A  +A  +R  +E ++  I     + IT+S G++  +   + I  ++ RA
Sbjct: 238 VILPETNLDSAVDVAERIRATLEKTEFPIQEK-QVKITVSIGVSTYQLEDQKIDLVLQRA 296

Query: 241 DQALYVAKKSGRNRVV 256
           D+ALY AK  GRNRVV
Sbjct: 297 DKALYQAKNQGRNRVV 312


>gi|217963666|ref|YP_002349344.1| ggdef domain protein [Listeria monocytogenes HCC23]
 gi|217332936|gb|ACK38730.1| ggdef domain protein [Listeria monocytogenes HCC23]
 gi|307571759|emb|CAR84938.1| GGDEF domain protein [Listeria monocytogenes L99]
          Length = 357

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 102/197 (51%), Gaps = 17/197 (8%)

Query: 76  ITISLLLGYISGSIL------KELFISYNRISQLSRIDCLSGLLNHSAFISS-LGSYNEK 128
           + I+L++G +S  ++      K+LF  Y + S L  +  LS +      I+  + S + +
Sbjct: 164 VLIALVIGAVSAGLMSNMIKSKQLFQKYEQDSTLDYLTKLSNVRQFDEKINHVMDSGSRQ 223

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAA 184
           ++++  DIDYFK IND +GH  GD ++     QL V+       G    R GGEEF+   
Sbjct: 224 VTLMLIDIDYFKNINDTYGHDAGDAIL----KQLAVILKASTTDGSEAFRNGGEEFSIVL 279

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQA 243
           L  S +E   +A  +RK  E     I  G  + ITIS G++        S  +++ AD+A
Sbjct: 280 LDCSIEEGNKVAEQVRKETEEHDFVIPGGQIVKITISVGVSSSKDGANTSEGLFKSADEA 339

Query: 244 LYVAKKSGRNRVVCFSD 260
           LY AK +GRNR VC +D
Sbjct: 340 LYKAKLTGRNR-VCIAD 355


>gi|157155149|ref|YP_001461960.1| diguanylate cyclase [Escherichia coli E24377A]
 gi|157077179|gb|ABV16887.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           E24377A]
          Length = 443

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 100/183 (54%), Gaps = 8/183 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQ 141
           YI  +++  +F   N  + ++  D L+   N   FI SL   S +   S++  DID FK 
Sbjct: 263 YIISTLMYYVFRKLNHANHMAIHDPLTNTYNRRYFIDSLKNISKHHDFSVIMLDIDSFKS 322

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH +GD+VI  ++  +         +GRLGGEEF     G++++    +A  +RK
Sbjct: 323 INDKWGHHMGDQVIVMVTRIIKKSIRKEDILGRLGGEEFGIIIKGNTQKLLLSIAERIRK 382

Query: 202 IIEN--SQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            IE   S+  +S GP   IT+S G   ++  +  P S ++  AD+ALY AK++G+N+V+ 
Sbjct: 383 NIEEQCSEKLLSHGPE-KITVSIGCFTSKENNLSP-SEMLVNADKALYQAKRTGKNKVII 440

Query: 258 FSD 260
            S 
Sbjct: 441 HSK 443


>gi|256823241|ref|YP_003147204.1| diguanylate cyclase [Kangiella koreensis DSM 16069]
 gi|256796780|gb|ACV27436.1| diguanylate cyclase [Kangiella koreensis DSM 16069]
          Length = 469

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 92/180 (51%), Gaps = 9/180 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNE-KLSIVFFDIDY 138
           S   L EL     ++ +L+  D L+ + N   F+       S  S N   L ++  D D+
Sbjct: 282 SERALIELKAVNQKLEELAATDSLTRVANRREFMKRSEEEMSRSSRNSTDLCLMVIDFDH 341

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND +GH  GDKV+         V      +GR+GGEEFA     ++ + A  +A  
Sbjct: 342 FKEINDQYGHQAGDKVLKDFVKLAKEVMRPSDLLGRIGGEEFALLLPETNIRSAVKVAER 401

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           LR+ IE   I I S   I +TIS G+AE   K + +   ++RAD+ LY AK  GRNRVV 
Sbjct: 402 LRQHIEEESIVIGS-KRIKLTISIGVAEYQPKVDTVKKWLHRADEFLYQAKDKGRNRVVV 460


>gi|172057206|ref|YP_001813666.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15]
 gi|171989727|gb|ACB60649.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15]
          Length = 373

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 90/168 (53%), Gaps = 8/168 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q +R D L+GL N  AF   L         ++ +++++  DID+FKQIND +GH  GD
Sbjct: 194 LQQTARRDFLTGLHNFRAFTDHLEDLKQQTILHSREVALITVDIDHFKQINDTYGHEAGD 253

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+   + +L        +V R GGEEF+      +  +   LA  LR+ I  +   +SS
Sbjct: 254 EVLRQFAKRLQDGVTDSGYVSRNGGEEFSILVERLTVVKVLALAEQLREQIAAAPFVLSS 313

Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           G  +H+T S G+A        I  I+  AD ALY +K++GRNRV  FS
Sbjct: 314 GMLLHLTASFGVASFPETTGQIQHIVTDADAALYQSKQNGRNRVTLFS 361


>gi|290893121|ref|ZP_06556109.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J2-071]
 gi|290557283|gb|EFD90809.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J2-071]
          Length = 357

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 102/197 (51%), Gaps = 17/197 (8%)

Query: 76  ITISLLLGYISGSIL------KELFISYNRISQLSRIDCLSGLLNHSAFISS-LGSYNEK 128
           + I+L++G +S  ++      K+LF  Y + S L  +  LS +      I+  + S + +
Sbjct: 164 VLIALVIGAVSAGLMSNMIKSKQLFQKYEQDSTLDYLTKLSNVRQFDEKINHVMDSGSRQ 223

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAA 184
           ++++  DIDYFK IND +GH  GD ++     QL V+       G    R GGEEF+   
Sbjct: 224 VTLMLIDIDYFKNINDTYGHDAGDAIL----KQLAVILKASTTDGSEAFRNGGEEFSIVL 279

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQA 243
           L  S +E   +A  +RK  E     I  G  + ITIS G++        S  +++ AD+A
Sbjct: 280 LDCSIEEGNKVAEQVRKETEEHDFVIPGGQIVKITISVGVSSSKDGANTSEGLFKSADEA 339

Query: 244 LYVAKKSGRNRVVCFSD 260
           LY AK +GRNR VC +D
Sbjct: 340 LYKAKLTGRNR-VCIAD 355


>gi|239908553|ref|YP_002955295.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
 gi|239798420|dbj|BAH77409.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
          Length = 430

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 84/159 (52%), Gaps = 13/159 (8%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N +    +L         +   LS++ FDID+FK +ND +GHP GD V+A L+
Sbjct: 276 DALTGIANRAGLAEALEREFHRSQRHPASLSVIIFDIDHFKNVNDAYGHPAGDAVLAELT 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HI 218
             +          GR GGEEF   A G+   EAA LA  LR     S +     P++  +
Sbjct: 336 RLVTTHVRDHDTFGRYGGEEFLIIAPGTDVAEAAKLAERLR-----SDVARHGFPAVGSL 390

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           T S G+A     +   +++ RAD ALY AK+SGR+RVV 
Sbjct: 391 TCSFGVAVAGPDDTPDSLVARADTALYDAKQSGRDRVVA 429


>gi|322616979|gb|EFY13887.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618218|gb|EFY15110.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625889|gb|EFY22708.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626341|gb|EFY23151.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632756|gb|EFY29501.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322639098|gb|EFY35791.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640414|gb|EFY37070.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647225|gb|EFY43724.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322655535|gb|EFY51843.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660313|gb|EFY56551.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662994|gb|EFY59201.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668179|gb|EFY64338.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674062|gb|EFY70156.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675586|gb|EFY71660.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683003|gb|EFY79019.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686697|gb|EFY82675.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195415|gb|EFZ80595.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198057|gb|EFZ83174.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204471|gb|EFZ89477.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207561|gb|EFZ92509.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211000|gb|EFZ95860.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217546|gb|EGA02265.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323226692|gb|EGA10889.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231568|gb|EGA15681.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236011|gb|EGA20090.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240581|gb|EGA24624.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245473|gb|EGA29473.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247591|gb|EGA31542.1| putative diguanylate cyclase YedQ [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253946|gb|EGA37770.1| putative diguanylate cyclase YedQ [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257769|gb|EGA41449.1| putative diguanylate cyclase YedQ [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262124|gb|EGA45687.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266247|gb|EGA49737.1| putative diguanylate cyclase YedQ [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270724|gb|EGA54163.1| putative diguanylate cyclase YedQ [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 570

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+ +  T  LL+ + +   ++K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 -YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            Y E     S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKTQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY AK+SGRNR +C SD
Sbjct: 542 LADKRLYYAKQSGRNR-ICASD 562


>gi|238795416|ref|ZP_04638931.1| Diguanylate cyclase [Yersinia mollaretii ATCC 43969]
 gi|238720535|gb|EEQ12336.1| Diguanylate cyclase [Yersinia mollaretii ATCC 43969]
          Length = 313

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 95/185 (51%), Gaps = 14/185 (7%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIV 132
           LLG ++    K L  +   + ++S  D L+GL N        H+ F  S   Y    +++
Sbjct: 129 LLGLVTYRTAKRLAENKEELLRISVRDGLTGLYNRRHWEHQLHNQF-DSCRRYQHGATLI 187

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQE 191
             DID FK IND FGH VGD  I  L+++L++       VGR GG+EF A    ++ EQ 
Sbjct: 188 LLDIDNFKSINDTFGHAVGDDAITVLAEELLLGLRAIDIVGRYGGDEFGAILPNTTAEQT 247

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250
             +L     K+   + +  +  PS+ + +SAGIA+  H        +  AD ALY+AK +
Sbjct: 248 REVLTRIQEKL---ADLVFAQAPSLQLRVSAGIADYRHDMINYQQWLKAADSALYLAKDN 304

Query: 251 GRNRV 255
           GRNR+
Sbjct: 305 GRNRI 309


>gi|156976668|ref|YP_001447574.1| hypothetical protein VIBHAR_05442 [Vibrio harveyi ATCC BAA-1116]
 gi|156528262|gb|ABU73347.1| hypothetical protein VIBHAR_05442 [Vibrio harveyi ATCC BAA-1116]
          Length = 539

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 104/200 (52%), Gaps = 16/200 (8%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY- 125
           E+  L+ + + +S++L Y+        F    RI  L+  D L+GL+N +AF S      
Sbjct: 339 EHEWLMQVGVVLSIVLAYLIARFQLRAFSDNQRIYYLAHHDSLTGLVNRAAFQSQASETL 398

Query: 126 ------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                   ++ +++ D+D FK IND +GH  GDK +  ++  +  VFG+   + RLGG+E
Sbjct: 399 SQCLKAGREVCLIYLDLDNFKFINDEYGHAAGDKTLQHVASVMQRVFGSKALLARLGGDE 458

Query: 180 FAAAALGSSE--QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-- 235
           F A  L S E  Q+    A+ L ++I++    I   P +   ++  I     KE   T  
Sbjct: 459 F-AILLSSQEHMQDPEHFASSLIQLIQDP---IEVRPDVFHQVTTSIGGCYAKETTCTLD 514

Query: 236 -IIYRADQALYVAKKSGRNR 254
            ++++AD A+Y AK+SG+NR
Sbjct: 515 ELMHQADMAMYEAKRSGKNR 534


>gi|330982979|gb|EGH81082.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 232

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 11/167 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +++  D L+GL N  +        I ++    +  S++  DID+FK +ND +GHP 
Sbjct: 69  QKLLEIAHSDPLTGLDNRRSAEHTLERQIPAVSMSGKPFSLIICDIDHFKAVNDRYGHPA 128

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VI  ++  L           R GGEEF      SS ++AA LA  +RK +E+  I  
Sbjct: 129 GDSVITSVAAILKQRIRLLDVAARWGGEEFLILVPDSSLKQAAELAERIRKSVESLVIPE 188

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +      +TIS G+AE    E  +++I RAD+ALY AK+ GRNRV C
Sbjct: 189 TGS----VTISLGVAELSAGETAASLIQRADKALYQAKRLGRNRVEC 231


>gi|326316655|ref|YP_004234327.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373491|gb|ADX45760.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 535

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 91/174 (52%), Gaps = 10/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L  ++ R+  ++  D L+G+ N  A+       ++    Y   +S+V FD+D+FK+ ND 
Sbjct: 341 LVEAHARMEHMAEHDGLTGVHNRRAYDRRIREVMAQCRRYQRPVSVVMFDVDFFKRYNDA 400

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            GHP GD+ +  +++ L      P  F+ R GGEEFA     +    A  +A   R  + 
Sbjct: 401 LGHPEGDECLRRVANALAGSIRRPGDFIARYGGEEFAIVLPETDAPGALQVAQAARSAVI 460

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256
             ++     P  H+T+S G+A    +EP +   ++ RAD ALY AK+ GR+R+V
Sbjct: 461 ALRLPHPGSPFGHVTVSGGVACSPGQEPETPEELLGRADTALYEAKQQGRDRIV 514


>gi|297566847|ref|YP_003685819.1| diguanylate cyclase [Meiothermus silvanus DSM 9946]
 gi|296851296|gb|ADH64311.1| diguanylate cyclase [Meiothermus silvanus DSM 9946]
          Length = 343

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 95/176 (53%), Gaps = 16/176 (9%)

Query: 91  KELFISYN-RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           +EL    N R+  L+  D L+GL N    ++ L         Y++ LS++  D+D FK+ 
Sbjct: 170 QELLEEANARLKVLADHDELTGLYNRRVLMARLKEEFHRALRYDQPLSLLMIDVDGFKEY 229

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD+V+  ++ ++ ++        R GGEEFA     ++   A  LA  LR+ 
Sbjct: 230 NDTYGHSAGDEVLQQVAYRIKMMLRAGDLPARYGGEEFAVVLPNTTLTGAVALAERLRQA 289

Query: 203 IENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVV 256
           IE      +  P   +TIS G+A +    +EP  T+I  AD+ALY AK++GRNRVV
Sbjct: 290 IER-----APWPLRPLTISVGVAAQTAAAEEP-HTLIATADEALYEAKRAGRNRVV 339


>gi|167552781|ref|ZP_02346532.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205322608|gb|EDZ10447.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 570

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+ +  T  LL+ + +   ++K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 -YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            Y E     S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY AK+SGRNR +C SD
Sbjct: 542 LADKRLYYAKQSGRNR-ICASD 562


>gi|149909932|ref|ZP_01898581.1| sensory box/GGDEF family protein [Moritella sp. PE36]
 gi|149806946|gb|EDM66905.1| sensory box/GGDEF family protein [Moritella sp. PE36]
          Length = 320

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 114/220 (51%), Gaps = 19/220 (8%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI---------SQLSRID 107
           P  G+   + +N++++ ++ +++  + ++S  I     I+ NR+         ++LS+ D
Sbjct: 100 PVTGISEFMYQNMTIIPLA-SLTGEVTHVSLIIYDVTDIAINRLQLDKANAELARLSQTD 158

Query: 108 CLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+ L N   + + + S       Y +  + +  DID+FK +ND +GH  GDKVIA +S 
Sbjct: 159 ALTQLNNRHRWNNLIDSEFKRVKRYEQISTFMMLDIDHFKNVNDTYGHVAGDKVIAEVSR 218

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            +        F  R GG+EFA     ++   A ILA+ LR+ IEN+ I      +I +TI
Sbjct: 219 VIRENVRETDFSARYGGDEFAICLTNTTAHNAIILADRLRQAIENTVI-TDDDNNIKVTI 277

Query: 221 SAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           S G+AE   + + + T    AD ALY  K++GRN+   F 
Sbjct: 278 SIGMAEFTENTDTVDTWTKNADCALYKGKENGRNQYSIFK 317


>gi|15800111|ref|NP_286123.1| diguanylate cyclase AdrA [Escherichia coli O157:H7 EDL933]
 gi|15829689|ref|NP_308462.1| diguanylate cyclase AdrA [Escherichia coli O157:H7 str. Sakai]
 gi|168749835|ref|ZP_02774857.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756914|ref|ZP_02781921.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4401]
 gi|168768323|ref|ZP_02793330.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776322|ref|ZP_02801329.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783238|ref|ZP_02808245.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786219|ref|ZP_02811226.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC869]
 gi|195938555|ref|ZP_03083937.1| diguanylate cyclase AdrA [Escherichia coli O157:H7 str. EC4024]
 gi|208807537|ref|ZP_03249874.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815128|ref|ZP_03256307.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208823086|ref|ZP_03263404.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396741|ref|YP_002269023.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4115]
 gi|217325787|ref|ZP_03441871.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           TW14588]
 gi|254791563|ref|YP_003076400.1| diguanylate cyclase AdrA [Escherichia coli O157:H7 str. TW14359]
 gi|261223861|ref|ZP_05938142.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256069|ref|ZP_05948602.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291281288|ref|YP_003498106.1| MASE2 domain/diguanylate cyclase [Escherichia coli O55:H7 str.
           CB9615]
 gi|12513225|gb|AAG54731.1|AE005217_9 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13359892|dbj|BAB33858.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187768330|gb|EDU32174.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015870|gb|EDU53992.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999344|gb|EDU68330.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355958|gb|EDU74377.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362362|gb|EDU80781.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4486]
 gi|189373607|gb|EDU92023.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC869]
 gi|208727338|gb|EDZ76939.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731776|gb|EDZ80464.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737279|gb|EDZ84963.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158141|gb|ACI35574.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4115]
 gi|209744364|gb|ACI70489.1| hypothetical protein ECs0435 [Escherichia coli]
 gi|209744366|gb|ACI70490.1| hypothetical protein ECs0435 [Escherichia coli]
 gi|209744368|gb|ACI70491.1| hypothetical protein ECs0435 [Escherichia coli]
 gi|209744370|gb|ACI70492.1| hypothetical protein ECs0435 [Escherichia coli]
 gi|209744372|gb|ACI70493.1| hypothetical protein ECs0435 [Escherichia coli]
 gi|217322008|gb|EEC30432.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           TW14588]
 gi|254590963|gb|ACT70324.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str.
           TW14359]
 gi|290761161|gb|ADD55122.1| MASE2 domain/diguanylate cyclase [Escherichia coli O55:H7 str.
           CB9615]
 gi|320192794|gb|EFW67434.1| Protein YaiC [Escherichia coli O157:H7 str. EC1212]
 gi|320638373|gb|EFX08087.1| diguanylate cyclase AdrA [Escherichia coli O157:H7 str. G5101]
 gi|320643753|gb|EFX12876.1| diguanylate cyclase AdrA [Escherichia coli O157:H- str. 493-89]
 gi|320649104|gb|EFX17682.1| diguanylate cyclase AdrA [Escherichia coli O157:H- str. H 2687]
 gi|320655997|gb|EFX23913.1| diguanylate cyclase AdrA [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320662554|gb|EFX29943.1| diguanylate cyclase AdrA [Escherichia coli O55:H7 str. USDA 5905]
 gi|320665124|gb|EFX32217.1| diguanylate cyclase AdrA [Escherichia coli O157:H7 str. LSU-61]
 gi|326341141|gb|EGD64933.1| Protein YaiC [Escherichia coli O157:H7 str. 1044]
          Length = 371

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 107/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P +++ IS G+A      P++  +  Y
Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVNLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367


>gi|326797138|ref|YP_004314958.1| diguanylate cyclase with PAS/PAC and GAF sensors [Marinomonas
           mediterranea MMB-1]
 gi|326547902|gb|ADZ93122.1| diguanylate cyclase with PAS/PAC and GAF sensors [Marinomonas
           mediterranea MMB-1]
          Length = 607

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/181 (34%), Positives = 91/181 (50%), Gaps = 8/181 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS----SLGS---YNEKLSIVFFDIDYF 139
            S+  E  ++  ++ + +  D L+GL+N   F      SL      N  LSI+  DID F
Sbjct: 413 ASVAIENRLAQRKLEEQAFYDHLTGLVNRRRFFELAEVSLQESIEQNYPLSILMLDIDRF 472

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND FGH  GD+V+  L+     + G    VGR GGEEF      S  + AA LA  L
Sbjct: 473 KEINDRFGHETGDRVLQALARCASSLVGKNDVVGRFGGEEFTILLPQSDRKRAASLAKTL 532

Query: 200 RKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           R+ +   +   S+G  +  T S G +        I  ++ +AD ALY AK +GRN VV +
Sbjct: 533 RQALSELRTPSSTGIDVQFTASFGVVCNDAKNRSIDDLLSKADHALYQAKGNGRNCVVSY 592

Query: 259 S 259
           +
Sbjct: 593 T 593


>gi|315619770|gb|EFV00289.1| diguanylate cyclase domain protein [Escherichia coli 3431]
          Length = 388

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 100/182 (54%), Gaps = 8/182 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQ 141
           YI  +++  +F   N  + ++  D L+   N   FI SL   S +   S++  DID FK 
Sbjct: 208 YIISTLMYYVFRKLNHANHMAIHDPLTNTYNRRYFIDSLKNISKHHDFSVIMLDIDSFKS 267

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH +GD+VI  ++  +         +GRLGGEEF     G++++    +A  +RK
Sbjct: 268 INDKWGHHMGDQVIVMVTRIIKKSIRKEDILGRLGGEEFGIIIKGNTQKLLLSIAERIRK 327

Query: 202 IIEN--SQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            IE   S+  +S GP   IT+S G   ++  +  P S ++  AD+ALY AK++G+N+V+ 
Sbjct: 328 NIEEQCSEKLLSHGPE-KITVSIGCFTSKENNLSP-SEMLVNADKALYQAKRTGKNKVII 385

Query: 258 FS 259
            S
Sbjct: 386 HS 387


>gi|294338946|emb|CAZ87290.1| putative diguanylate cyclase [Thiomonas sp. 3As]
          Length = 752

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/176 (36%), Positives = 89/176 (50%), Gaps = 17/176 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
           + +  L+  D L+G+ N   F++                 ++  DID FKQIND FGH V
Sbjct: 573 SELRNLAYTDTLTGIPNRRYFLARAALELRRAQREGSPFVVLALDIDRFKQINDRFGHQV 632

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VI   +   +     P   GRLGG+EFA     ++ Q A  +A  LR  I+ +    
Sbjct: 633 GDAVIRCFAQTCMQQLRGPDLCGRLGGDEFAILLPQTTRQVAFDVAQRLRLSIQEASCLP 692

Query: 211 SSGPS-IHITISAGIAERCHKEPIST------IIYRADQALYVAKKSGRNRVVCFS 259
           SS P  + +T S GIAE     P ST      ++ RADQALY AK++GRNRV  ++
Sbjct: 693 SSAPDGLTLTTSIGIAEFL---PTSTLMDADELLDRADQALYRAKQAGRNRVEIWT 745


>gi|204931366|ref|ZP_03222065.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|157168653|gb|ABV25707.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Weltevreden]
 gi|204319849|gb|EDZ05058.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 570

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+ +  T  LL+ + +   ++K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 -YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            Y E     S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY AK+SGRNR +C SD
Sbjct: 542 LADKRLYYAKQSGRNR-ICASD 562


>gi|259156610|gb|ACV96553.1| pas/pac/ggdef-domain containing protein [Vibrio fluvialis Ind1]
          Length = 423

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 99/182 (54%), Gaps = 14/182 (7%)

Query: 84  YIS-GSILKELFISYNRISQLSRIDCLSGLLNHS--------AFISSLGSYNEKLSIVFF 134
           Y+S G  + E       + + + +D L+GL N +        A+  +L S  E +S++  
Sbjct: 237 YVSVGKDVTERLREEQALRESATVDQLTGLFNRNHGKALLREAYSFTL-SREEPMSLILC 295

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FKQIND+FGHPVGD+++A +S  L         V R GGEEF       ++  AA 
Sbjct: 296 DIDHFKQINDSFGHPVGDQILAQVSGLLRKSVRGNDRVIRWGGEEFLILLENCTDMVAAE 355

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           LA  LR  I + Q   S G    +T+S G+A    KE +  +I R D+ALY +K++GRN+
Sbjct: 356 LAERLRLRIASEQFQ-SVG---KVTVSLGVASLFQKESLEQLISRCDEALYKSKRNGRNQ 411

Query: 255 VV 256
           + 
Sbjct: 412 LT 413


>gi|168244837|ref|ZP_02669769.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168462472|ref|ZP_02696403.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|194449982|ref|YP_002046038.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197247894|ref|YP_002146037.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|198245164|ref|YP_002215098.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200390082|ref|ZP_03216693.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|238912441|ref|ZP_04656278.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|194408286|gb|ACF68505.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|195634181|gb|EDX52533.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197211597|gb|ACH48994.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197939680|gb|ACH77013.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199602527|gb|EDZ01073.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205336370|gb|EDZ23134.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|326622846|gb|EGE29191.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 570

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+ +  T  LL+ + +   ++K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 -YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            Y E     S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY AK+SGRNR +C SD
Sbjct: 542 LADKRLYYAKQSGRNR-ICASD 562


>gi|303246879|ref|ZP_07333156.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio fructosovorans JJ]
 gi|302491896|gb|EFL51776.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio fructosovorans JJ]
          Length = 432

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 77/161 (47%), Gaps = 11/161 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            L+ +D L+  LN       L         Y   LS+V  DID+FK IND  GH  GD V
Sbjct: 266 DLANLDPLTRALNRRKLADVLTDEAARADRYGAPLSVVLLDIDHFKAINDTHGHEAGDAV 325

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  L+ +L         + R GGEEF   A G   +  A LA  LR+ + +     +   
Sbjct: 326 LVELAGRLRATLRQVDRLARFGGEEFVVVAPGVGLEATAELAERLRQAVADKDFAATG-- 383

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              +T S G+AER   E     + RAD+ALY AK SGRNRV
Sbjct: 384 --RVTASFGVAERVPGEDPERALGRADKALYRAKNSGRNRV 422


>gi|224367366|ref|YP_002601529.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223690082|gb|ACN13365.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 339

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 10/177 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQI 142
            S+ K+L +S     + +  D L+GLLN   F S L    +       ++  DID+FK++
Sbjct: 163 ASLRKKLDVS----KKDAETDALTGLLNRRGFESRLHPLLKDPQSCFCLIMIDIDHFKRV 218

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH VGD ++  L++ L         + R GGEEF      +  ++A  +A D+RK 
Sbjct: 219 NDTYGHLVGDSILKALANLLKQQTKGKDCLARFGGEEFIILLPETRLEQAGAVAEDIRKK 278

Query: 203 I--ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  +  +   +  P   ITIS G+ +    E   T+I+R D ALY AK++GRNRVV 
Sbjct: 279 LAAQEWKQRKTGKPMGKITISLGVTQYRPNESEVTLIHRVDTALYTAKRNGRNRVVT 335


>gi|168234159|ref|ZP_02659217.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194472041|ref|ZP_03078025.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205352320|ref|YP_002226121.1| hypothetical protein SG1069 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207856501|ref|YP_002243152.1| hypothetical protein SEN1023 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|194458405|gb|EDX47244.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205272101|emb|CAR36954.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205331864|gb|EDZ18628.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|206708304|emb|CAR32607.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326627369|gb|EGE33712.1| ggdef domain-containing protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 570

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+ +  T  LL+ + +   ++K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 -YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            Y E     S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY AK+SGRNR +C SD
Sbjct: 542 LADKRLYYAKQSGRNR-ICASD 562


>gi|161613445|ref|YP_001587410.1| hypothetical protein SPAB_01161 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161362809|gb|ABX66577.1| hypothetical protein SPAB_01161 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 570

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+ +  T  LL+ + +   ++K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 -YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            Y E     S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY AK+SGRNR +C SD
Sbjct: 542 LADKRLYYAKQSGRNR-ICASD 562


>gi|192361895|ref|YP_001983925.1| GGDEF domain-containing protein [Cellvibrio japonicus Ueda107]
 gi|190688060|gb|ACE85738.1| GGDEF domain protein [Cellvibrio japonicus Ueda107]
          Length = 512

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 77/154 (50%), Gaps = 8/154 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N  A+       +     Y   L+I   DID+FK+INDN+GH  GD+VI  + 
Sbjct: 355 DALTELPNREAYNERARAEVQRWERYGRPLAIAIIDIDHFKKINDNYGHQAGDRVIKVIG 414

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +        F  R GGEEF A    +S   A I+   +R  I  +  N    P + IT
Sbjct: 415 RSIAKRLREVDFFCRYGGEEFVALMPETSGDNALIVLEKIRDAIARAAFNYKEQP-LQIT 473

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           ISAG+ E    + + +   RADQALY AK +GRN
Sbjct: 474 ISAGLTEFKPGDTLDSAFERADQALYAAKSNGRN 507


>gi|189404017|ref|ZP_02786585.2| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4501]
 gi|189405928|ref|ZP_02825262.2| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC508]
 gi|189368093|gb|EDU86509.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4501]
 gi|189377384|gb|EDU95800.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC508]
 gi|326346083|gb|EGD69822.1| Protein YaiC [Escherichia coli O157:H7 str. 1125]
          Length = 366

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 107/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 171 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 229

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 230 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 289

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P +++ IS G+A      P++  +  Y
Sbjct: 290 VIMSGTP-AESAITA--MLRVHEGLNTLRLPNTPQVNLRISVGVA------PLNPQMSHY 340

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 341 REWLKSADLALYKAKKAGRNRT 362


>gi|149180978|ref|ZP_01859479.1| GGDEF domain protein [Bacillus sp. SG-1]
 gi|148851262|gb|EDL65411.1| GGDEF domain protein [Bacillus sp. SG-1]
          Length = 422

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 94/179 (52%), Gaps = 9/179 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L++L  + N+ +QL  ID  +G+ N+  F   +           + L+++F D+DY + +
Sbjct: 221 LQKLLQNANK-AQLIYIDEKTGIYNYRFFDEKINELYLLCKKSGKPLTLIFGDMDYLRDV 279

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           N+ FGH  GD+ I  +            F  R GGEEF      +++ EAA  A D+R+ 
Sbjct: 280 NNKFGHAAGDEAITAIGKVFKDSQQNRFFSARFGGEEFVMILPSTTKDEAARHAEDVRRK 339

Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           IE+  +    G  I ++IS G+A      E I T+I  AD+ALY AK++GRN+V  + +
Sbjct: 340 IEDINLLSEEGEKIPLSISLGVASFPADAEDIQTLIQSADEALYEAKRNGRNQVQLYGN 398


>gi|320085396|emb|CBY95177.1| Cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 570

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+ +  T  LL+ + +   ++K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 -YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            Y E     S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY AK+SGRNR +C SD
Sbjct: 542 LADKRLYYAKQSGRNR-ICASD 562


>gi|313673733|ref|YP_004051844.1| diguanylate cyclase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940489|gb|ADR19681.1| diguanylate cyclase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 495

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 85/172 (49%), Gaps = 14/172 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142
           KEL    +++  LS  D L+GL N        H  F   L  Y    SI+ FD+D FK I
Sbjct: 324 KELHDLNDKLKALSETDQLTGLYNRRKLEMHLHHEFTRYL-RYRGVFSIILFDVDNFKSI 382

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           NDN+GH  GD V+  LS  L           R GGEEF      ++ Q A I+A  +RKI
Sbjct: 383 NDNYGHSTGDFVLKELSTLLKKHLRESDLPARWGGEEFLILCPETNGQNALIIAEKIRKI 442

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253
           +      I       +TIS GIAE     P I +++ +AD+ LY AK SG+N
Sbjct: 443 VSEYDFGIDRA----VTISLGIAEIDENTPNIDSLLVKADKNLYKAKNSGKN 490


>gi|168239226|ref|ZP_02664284.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736370|ref|YP_002115021.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194711872|gb|ACF91093.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288064|gb|EDY27451.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 570

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+ +  T  LL+ + +   ++K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 -YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            Y E     S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY AK+SGRNR +C SD
Sbjct: 542 LADKRLYYAKQSGRNR-ICASD 562


>gi|90425011|ref|YP_533381.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
 gi|90107025|gb|ABD89062.1| diguanylate cyclase (GGDEF domain) [Rhodopseudomonas palustris
           BisB18]
          Length = 452

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 88/179 (49%), Gaps = 14/179 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL     R++ L+  D L+GL N   F       I+    +    S+V +D+D+FK +ND
Sbjct: 276 ELRDRARRLAVLATTDRLTGLYNRLKFDEALVAEIARAERFRMPFSLVIYDVDHFKVVND 335

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGHP+GD V+A LSD +         + R GGEEFA    GS   +   +A  LR  I 
Sbjct: 336 AFGHPIGDSVLAGLSDVVSSQLRATDTLARWGGEEFAILVTGS---DGCFVAEKLRTAIA 392

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
               +   G    +T S G+ E    +    ++ RAD ALY AK  GRNRV  ++  E+
Sbjct: 393 GVSFDRVGG----VTCSFGVTEYLEGDTPEIMVARADAALYQAKVKGRNRVELYASPES 447


>gi|88799986|ref|ZP_01115557.1| probable two-component response regulator [Reinekea sp. MED297]
 gi|88777264|gb|EAR08468.1| probable two-component response regulator [Reinekea sp. MED297]
          Length = 539

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 105/198 (53%), Gaps = 19/198 (9%)

Query: 84  YISGSILKELFIS--YNRISQLSRI------DCLSGLLNHSAFISSLGSYNEK------- 128
           +++  + KE+ IS   NR  +   +      D L+GL++H+  + +L    E        
Sbjct: 345 FLTKPVPKEVLISTVMNRCRRYRGLHEQVIRDGLTGLVDHNHSLEALNRAIESSEAEGRL 404

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +S    DID FK +ND +GH +GD++I  L+  L   F     +GR GGEEFA     + 
Sbjct: 405 VSFAMLDIDRFKSVNDTYGHGMGDRIIHALALFLSQRFRVTDTIGRYGGEEFAIVLPDTD 464

Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVA 247
           E  A  L +++R+    +Q+    G  +I +T S G+A+    +  S++  RAD+ALY+A
Sbjct: 465 EATACRLLDEVREGF--AQVEHRRGDLAIQVTFSCGVAQAKPDDDASSLAQRADEALYLA 522

Query: 248 KKSGRNRVVCFSDIENNT 265
           KK GRN  VC SD  +++
Sbjct: 523 KKQGRN-AVCGSDQSDHS 539


>gi|312962462|ref|ZP_07776953.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           fluorescens WH6]
 gi|311283389|gb|EFQ61979.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           fluorescens WH6]
          Length = 798

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 96/184 (52%), Gaps = 13/184 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSI 131
           +L  GY+S   + +L      +  LS  D L+G+ N   F   L +        +  LS+
Sbjct: 614 TLWHGYVSD--ISDLKRVEEELRALSITDSLTGIHNRRYFQDRLKAEMVRVNRTSGALSV 671

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK+IND +GH VGD V+  L  ++           RLGGEEF     G+  ++
Sbjct: 672 IMLDIDHFKRINDKYGHAVGDGVLQELCKRISQRLRRTDVFCRLGGEEFMVLCPGTDGEQ 731

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A  LA DL +++ N+ +     P   +T S G+A     E I  ++ RAD A+YVAK++G
Sbjct: 732 AYSLAEDLWRVLRNAPME----PVGIVTASFGVASWRVDEGIDGLLLRADSAVYVAKQAG 787

Query: 252 RNRV 255
           R+RV
Sbjct: 788 RDRV 791


>gi|313109834|ref|ZP_07795769.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|310882271|gb|EFQ40865.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 542

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 10/160 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +  L             LS    DID+FKQ+ND FGHP+GD+VI  L+
Sbjct: 380 DSLTGLYNHTHTLQLLEDARLRARRDGRPLSFAMLDIDHFKQVNDRFGHPMGDRVIKGLA 439

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L         +GR GGEEFA     +    A ++ +++R+    ++I+  + P+ +  
Sbjct: 440 LFLKQRLRKTDHIGRYGGEEFAVVLPDTDLDAARLVLDEIRQRF--AEIHYPAQPTDLRC 497

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           T S GIAE      I ++  +AD+ALY AK  GRNR+  +
Sbjct: 498 TFSCGIAELTPDLDIKSMAKQADEALYRAKHGGRNRIEVY 537


>gi|218893937|ref|YP_002442806.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|218774165|emb|CAW29982.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
          Length = 542

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 10/160 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +  L             LS    DID+FKQ+ND FGHP+GD+VI  L+
Sbjct: 380 DSLTGLYNHTHTLQLLEDARLRARRDGRPLSFAMLDIDHFKQVNDRFGHPMGDRVIKGLA 439

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L         +GR GGEEFA     +    A ++ +++R+    ++I+  + P+ +  
Sbjct: 440 LFLKQRLRKTDHIGRYGGEEFAVVLPDTDLDAARLVLDEIRQRF--AEIHYPAQPTDLRC 497

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           T S GIAE      I ++  +AD+ALY AK  GRNR+  +
Sbjct: 498 TFSCGIAELTPDLDIKSMAKQADEALYRAKHGGRNRIEVY 537


>gi|254414369|ref|ZP_05028136.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196179044|gb|EDX74041.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 314

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 11/176 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
           ++KE     N + +L+  D L+GL N   F++           Y   +SI+  DID+FKQ
Sbjct: 138 LVKEHEKLANLLRKLAITDPLTGLWNRRHFLTVAYQEFNRASRYKRFMSILMIDIDHFKQ 197

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH +GD+V+  ++  +V       + GR GGEEF      +    A  +A  LRK
Sbjct: 198 INDEYGHTMGDEVLKGVAKSIVGSLREADYCGRFGGEEFVTLLPETDSSGAVRVAERLRK 257

Query: 202 IIENSQINISSG-PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +E  QI I  G   + +T++ G+A  +     I  II RA++ALY AK  G NRV
Sbjct: 258 RME--QITIGIGDKQVQMTVTVGVASYQLDDANIEVIIQRANKALYHAKSQGYNRV 311


>gi|94500044|ref|ZP_01306579.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Oceanobacter sp. RED65]
 gi|94427902|gb|EAT12877.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Oceanobacter sp. RED65]
          Length = 538

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 86/160 (53%), Gaps = 11/160 (6%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +  L          +E LS    DID+FK+INDN+GHPVGDKVI+ LS
Sbjct: 378 DSLTGLYNHTHILERLYQACQQSCENDEPLSFAMIDIDFFKKINDNYGHPVGDKVISALS 437

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L         +GR GGEEFA     +   +A  + N++RK+   SQ+  S+  +   +
Sbjct: 438 LFLKQRLRRSDSIGRYGGEEFAIVMPNTKGHDALHVMNEIRKVF--SQLVHSTWETEFTV 495

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + S G+ E         II  AD+ALY AKK GRN V  +
Sbjct: 496 SFSGGVCEFTGSNS-EFIIEHADEALYEAKKQGRNNVQLY 534


>gi|85374409|ref|YP_458471.1| response regulator [Erythrobacter litoralis HTCC2594]
 gi|84787492|gb|ABC63674.1| response regulator [Erythrobacter litoralis HTCC2594]
          Length = 383

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 91/166 (54%), Gaps = 21/166 (12%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAF 157
           +R D L+GLLN  AF    G Y +  +      ++  D+D+FK+INDNFGH  GD V+  
Sbjct: 221 ARHDALTGLLNRRAF---FGDYADPPAAGRDRFLLMIDLDHFKRINDNFGHDTGDIVLRA 277

Query: 158 LSDQLVVVFGT-PMFVG---RLGGEEFAAAALGSSEQEAAILANDL----RKIIENSQIN 209
           +++Q+  V    P       RLGGEEF     G  E+ AA+ A +L    R+I+   +++
Sbjct: 278 MAEQMQAVAADFPEDTAGCVRLGGEEFILVIDGIDERHAALAAENLRLRARRIVTAQKLD 337

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               P + ++ S G+A +   E +  ++ R+D ALY AK  GR++V
Sbjct: 338 ----PQLRVSASIGLARQREHESLDDVLQRSDLALYRAKDRGRDQV 379


>gi|127514258|ref|YP_001095455.1| diguanylate cyclase [Shewanella loihica PV-4]
 gi|126639553|gb|ABO25196.1| diguanylate cyclase [Shewanella loihica PV-4]
          Length = 401

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 8/164 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPV 150
            ++ Q +  D L+GL N  A    L   +++        S++ FD+D+FKQIND FGH  
Sbjct: 222 QKMRQQADRDYLTGLWNRRAMQQQLEQLHQRWLRDGQAYSLILFDLDFFKQINDKFGHSA 281

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+   + Q+  V        RLGGEEF     G+  + A I+A  L++ +  S +N 
Sbjct: 282 GDAVLVKTAQQIGKVTRAMDIFCRLGGEEFLLVLPGTDGEVAEIIAQKLQQALRQSSLNW 341

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             G  I I+ S GI      +   +++  AD+A+Y AK++GR+R
Sbjct: 342 -QGSLIPISASFGIVTTATGDTPDSLLALADKAMYRAKETGRDR 384


>gi|299065972|emb|CBJ37153.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum CMR15]
          Length = 536

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 102/196 (52%), Gaps = 15/196 (7%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNR----ISQLSRIDCLSGLLNHSAFISSLGS-- 124
           LV + +  SLL       + + L  S  R    ++  +  D L+G+L    F++   +  
Sbjct: 340 LVFVLVVWSLLRERQHHRVTRHLNQSLQRTNSALANEAHFDHLTGVLTRRRFLALFETVL 399

Query: 125 -----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                  E+L +V  D+D+FK+IND +GH VGD  +   +     V  +   +GRLGGEE
Sbjct: 400 TRTHVRGEQLVLVLADLDHFKRINDTWGHAVGDLALQRFASLATSVMRSSDLIGRLGGEE 459

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIY 238
           FA     ++ +EAA +   LR  +  +  ++ SG  + +T+S G+   CH  +  S ++ 
Sbjct: 460 FAVVMSRTTLEEAAGVVERLRASVAEADESLPSG--LAMTVSLGMTA-CHAGDTASEMLR 516

Query: 239 RADQALYVAKKSGRNR 254
           RAD ALY AK+SGRNR
Sbjct: 517 RADLALYRAKESGRNR 532


>gi|187923576|ref|YP_001895218.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia phytofirmans
           PsJN]
 gi|187714770|gb|ACD15994.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia phytofirmans
           PsJN]
          Length = 444

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 95/172 (55%), Gaps = 9/172 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           + E  +S + +++L   D L+G+ + + F       ++    +   LS+V  D DYFK+I
Sbjct: 249 VTERKVSSDNLARLLTTDHLTGVSSRAHFFEIAEAEVARAERHGRALSVVMLDADYFKRI 308

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD+V+  ++ +   +  T   V RLGGEEF      ++  EA  +A  LR  
Sbjct: 309 NDTAGHQAGDEVLKRIAGEAKGLLRTSDTVARLGGEEFILMLPSTTTSEAVAVAERLRVA 368

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253
           +E ++I+ + G ++  T+S G+A      P + +++  AD+ALY AK++GRN
Sbjct: 369 VERARIDTAVG-TLKATVSLGVATVSTANPTLQSLLAAADRALYDAKRAGRN 419


>gi|15600036|ref|NP_253530.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107103942|ref|ZP_01367860.1| hypothetical protein PaerPA_01005013 [Pseudomonas aeruginosa PACS2]
 gi|116052991|ref|YP_793309.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|254238435|ref|ZP_04931758.1| hypothetical protein PACG_04577 [Pseudomonas aeruginosa C3719]
 gi|254244259|ref|ZP_04937581.1| hypothetical protein PA2G_05109 [Pseudomonas aeruginosa 2192]
 gi|296391675|ref|ZP_06881150.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|9951113|gb|AAG08228.1|AE004897_6 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115588212|gb|ABJ14227.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126170366|gb|EAZ55877.1| hypothetical protein PACG_04577 [Pseudomonas aeruginosa C3719]
 gi|126197637|gb|EAZ61700.1| hypothetical protein PA2G_05109 [Pseudomonas aeruginosa 2192]
          Length = 542

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 10/160 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +  L             LS    DID+FKQ+ND FGHP+GD+VI  L+
Sbjct: 380 DSLTGLYNHTHTLQLLEDARLRARRDGRPLSFAMLDIDHFKQVNDRFGHPMGDRVIKGLA 439

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L         +GR GGEEFA     +    A ++ +++R+    ++I+  + P+ +  
Sbjct: 440 LFLKQRLRKTDHIGRYGGEEFAVVLPDTDLDAARLVLDEIRQRF--AEIHYPAQPTDLRC 497

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           T S GIAE      I ++  +AD+ALY AK  GRNR+  +
Sbjct: 498 TFSCGIAELTPDLDIKSMAKQADEALYRAKHGGRNRIEVY 537


>gi|120553102|ref|YP_957453.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120322951|gb|ABM17266.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 368

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 9/167 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  +++ D L+GL N S F S+L              ++V  DID+FK +ND  GH  
Sbjct: 184 QRLVDMAQTDALTGLANRSNFQSTLARTIAECERSGTGFALVIMDIDHFKLVNDTLGHDA 243

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  +   L     T  FVGRLGGEEF          +A  L ++LR+ I   ++  
Sbjct: 244 GDYVLRHIGQSLTERLRTTDFVGRLGGEEFGLILRDVKPGDAFELMDELRERIARRELKY 303

Query: 211 SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
                I +T S GIA+   H     T+   AD+ LY  K++GRNRV 
Sbjct: 304 GEA-GIRVTASFGIAQWPDHGREAETLFCVADRCLYSGKRAGRNRVA 349


>gi|313683320|ref|YP_004061058.1| diguanylate cyclase with extracellular sensor [Sulfuricurvum
           kujiense DSM 16994]
 gi|313156180|gb|ADR34858.1| diguanylate cyclase with extracellular sensor [Sulfuricurvum
           kujiense DSM 16994]
          Length = 754

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 90/172 (52%), Gaps = 13/172 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144
           E+   + R+ +++  D L+GL+N       L   ++         S++  D+DYFK++ND
Sbjct: 585 EMGKYHKRLLKMATTDPLTGLVNRIRLDEKLAECHQFYQRTGRHFSVIIIDLDYFKRVND 644

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH +GDK +  +S  L     +   VGR GGEEF      ++ +    LA  ++ +IE
Sbjct: 645 TYGHLIGDKTLVNISKILSDNIRSIDMVGRWGGEEFMIICPETTSEGGKQLAEKIQSVIE 704

Query: 205 NSQINISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +       P IH +T S GI+E    + I  I+ RAD ALY AK+ GRNRV
Sbjct: 705 RNDF-----PYIHTMTCSFGISESREGDRIENIVGRADSALYRAKEEGRNRV 751


>gi|209548849|ref|YP_002280766.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209534605|gb|ACI54540.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 440

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 93/173 (53%), Gaps = 12/173 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148
           S   +  L+  D L+G+LN    +    +  EK       ++++ FD+D+FK++ND FGH
Sbjct: 231 SERHLRALTLTDSLTGVLNRRGLLGYFDAIQEKAHDEQHQVAVMLFDLDHFKRVNDRFGH 290

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+   +          +F GR+GGEEFAA A  + + EA  +A  +R   E  ++
Sbjct: 291 QSGDAVLTAFARMARQYIPNSIF-GRMGGEEFAAFAAVTDQTEAEAIAEAIR--TEFCRL 347

Query: 209 NISSGPSI-HITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
            +S+G +I  +T+S GIA     E  I  +I  AD+ALY AK +GRN  V F 
Sbjct: 348 PVSTGEAIVPVTVSIGIALASSLEANIDKLISAADRALYAAKAAGRNCTVTFG 400


>gi|297582767|ref|YP_003698547.1| diguanylate cyclase [Bacillus selenitireducens MLS10]
 gi|297141224|gb|ADH97981.1| diguanylate cyclase [Bacillus selenitireducens MLS10]
          Length = 520

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 91/183 (49%), Gaps = 18/183 (9%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNE-KLSIVFFDIDYFKQINDN 145
           L+    +I  L+  D L+G +N +AFI+       L   N+  LS+   DID+FK+IND 
Sbjct: 344 LYYERRKIRHLAHTDQLTGQMNRNAFINHANRLIRLSVKNKTPLSVALLDIDHFKKINDT 403

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD+ +  ++  +           R GGEEF      + E+EA I  + +R  I  
Sbjct: 404 YGHKTGDQALQEIATSIREALDESDLFARWGGEEFVIMMPETREKEAEIRLDAIRATIAG 463

Query: 206 ---SQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              +Q+         ITIS GI   R  ++ +  +I  AD+ALY AK  GRNRVV +   
Sbjct: 464 KAFTQVGT-------ITISIGITGARPDRDSLEQLIASADEALYEAKNKGRNRVVLYRSP 516

Query: 262 ENN 264
            +N
Sbjct: 517 RSN 519


>gi|187478249|ref|YP_786273.1| signaling protein [Bordetella avium 197N]
 gi|115422835|emb|CAJ49363.1| putative signaling protein [Bordetella avium 197N]
          Length = 381

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 116/237 (48%), Gaps = 19/237 (8%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTP-FYGLEYILVENLSLVIISITISLLLGYI 85
           FM+  ++  +I   T    A ++ ++I  TP      Y  +  LSL ++ I  SL LG I
Sbjct: 152 FMLCLALLATIGHVTR---AVLYTWWIDFTPGLLAPTYWNIVFLSLGVV-IMPSLTLGMI 207

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFK 140
              +L +  +      + +  D L+G+L+  A+  +      G+    ++++  DID+FK
Sbjct: 208 M--MLHDRMLRER--EREANTDFLTGVLSRKAWWGAASRLAAGARGRPIAVLLLDIDHFK 263

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVF--GTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           ++ND  GH  GD V+   +         G P+  GRLGGEEF AA  G+S  EA  LA  
Sbjct: 264 RVNDRLGHAAGDVVLRHFAAVAGAALRPGDPL--GRLGGEEFIAALPGASMDEAQALATR 321

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   +          P +  T S G+      EP+   + RAD+A+Y AKK+GR+RV
Sbjct: 322 MLAALRAMPCQFGDHP-VGYTFSGGVTVWDGTEPLHNAMERADRAMYQAKKNGRSRV 377


>gi|300313329|ref|YP_003777421.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gi|300076114|gb|ADJ65513.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 501

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 102/210 (48%), Gaps = 18/210 (8%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------ 122
           L L+I +    +LL  +   +LK +  +  ++  L+R D L+GLLN  +   +L      
Sbjct: 293 LLLIIFTALAGVLLMLVRRELLKRV-AAEKQLEDLARTDGLTGLLNRRSLDEALLAVWQR 351

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI----AFLSDQLVVVFGTPMFVGRLG 176
              S     S +F D+DYFK+ ND +GH +GD V+    A L + L          GR G
Sbjct: 352 SQRSPTAGFSTLFIDVDYFKRYNDTYGHEMGDTVLQAVAAVLREHLQR---QNDLAGRYG 408

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPIS 234
           GEEF      + E  A  +A  L + I N  I  S  P   I++S G+A   R   + + 
Sbjct: 409 GEEFVVLLEQTDEHGALRMAQQLCEAIYNRGIPHSGSPLGVISVSIGVATMNRAPHQRME 468

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            ++  AD ALY+AK+ GRNRV      +N+
Sbjct: 469 DVLNAADHALYIAKREGRNRVCVAHPGQND 498


>gi|256822386|ref|YP_003146349.1| response regulator receiver modulated diguanylate cyclase
           [Kangiella koreensis DSM 16069]
 gi|256795925|gb|ACV26581.1| response regulator receiver modulated diguanylate cyclase
           [Kangiella koreensis DSM 16069]
          Length = 426

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 95/180 (52%), Gaps = 9/180 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDI 136
           Y+  ++     I Y +++  +  D L+GL N   F        +S   ++  ++    DI
Sbjct: 238 YLRVAVNTSRVIEYEKLTTAATKDYLTGLNNRRHFYELVEVMHNSAVRHSTPIACALVDI 297

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FKQ+ND +GH VGD V+  ++  L         V R GGEEF    +G + + + I  
Sbjct: 298 DHFKQVNDTYGHQVGDAVLTEIAKILESSVRKSDVVARFGGEEFCMYMVGINRENSEIFF 357

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + L K +EN+ I+I  G  + +TIS G+    H   + ++I  ADQ LY AK++GRN+VV
Sbjct: 358 DKLLKRVENTAIDI-DGLEVKVTISIGV-NINHHHVLDSMIEIADQCLYEAKETGRNKVV 415


>gi|254457004|ref|ZP_05070432.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207085796|gb|EDZ63080.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 334

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 89/167 (53%), Gaps = 12/167 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            ++ L+  D L+GL N           I+ +     ++SI+F DID FK IND +GH +G
Sbjct: 173 ELNALAITDKLTGLYNRVKLDKVLDLEINKMVKLQAEISIIFIDIDRFKPINDTYGHQIG 232

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DKV+   S  L         VGR GGEEF      ++ + +  LA +LRKIIEN+     
Sbjct: 233 DKVLQSFSQVLKNNIRKTDIVGRWGGEEFLIICHEANIEGSLHLAENLRKIIENTSFEYI 292

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 +T S G+A     + I +++ RAD+ALY AK +GRN+ VCF
Sbjct: 293 K----ELTASFGVASFEDGDSIDSLVERADKALYKAKHNGRNK-VCF 334


>gi|15639965|ref|NP_219418.1| sensory transduction histidine kinase, putative [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189026204|ref|YP_001933976.1| sensory transduction histidine kinase [Treponema pallidum subsp.
           pallidum SS14]
 gi|3323303|gb|AAC65936.1| sensory transduction histidine kinase, putative [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018779|gb|ACD71397.1| possible sensory transduction histidine kinase [Treponema pallidum
           subsp. pallidum SS14]
          Length = 387

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 112/214 (52%), Gaps = 24/214 (11%)

Query: 56  TPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS-RIDCLSGLLN 114
           TP+   + I+++   L  I+I  +LLL   +  ++ ++ + +   + L+ ++D LS    
Sbjct: 191 TPYD--QSIIMDIAQLAAIAINNALLLEQATTDMMTQMKLKHYFFAMLTAKLDTLST--- 245

Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
                       E +S++  DID+FKQIND  GH  GD V+  +++ +           R
Sbjct: 246 -----------QETVSVLMLDIDFFKQINDTHGHLCGDLVLQHVAEIIRSCTRPCDIASR 294

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERC-HKEP 232
            GGEEF      +S +EAA +A  +R  +   Q+ I     SI +T+SAG+AE   ++E 
Sbjct: 295 YGGEEFMLMLSNNSSREAAHVAERIR--VATEQLTIPYHEVSIRVTVSAGVAEYLPNQES 352

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             T+I RAD ALY AK++GRN+VV     E N C
Sbjct: 353 AETLIKRADSALYQAKQNGRNKVVIS---EKNMC 383


>gi|254505767|ref|ZP_05117913.1| sensory box/ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219551420|gb|EED28399.1| sensory box/ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 303

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 98/191 (51%), Gaps = 12/191 (6%)

Query: 73  IISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSA---FISSL----GS 124
           II I    ++G I  S  + +L     ++++L+  D L+ L N      F SS       
Sbjct: 112 IICINTKKVIGLIGVSTDITDLVNMREKLAELANTDELTKLCNRRKLWQFFSSAYHQASE 171

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
            N  LS +  DID+FK+IND  GH  GDKVI  L+D +     +    GR+GGEEF    
Sbjct: 172 LNTPLSCIVIDIDHFKKINDAHGHDFGDKVIVELADIIRRNLRSTDCCGRIGGEEFLIVL 231

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY-RADQA 243
             +S Q A  +A  LR   +NS +N  + P    TIS G+ E   ++     +Y RADQA
Sbjct: 232 SNTSAQGAHDIAERLRTNFQNSPLNHVTAP---FTISCGVTELTPEDCDFFALYRRADQA 288

Query: 244 LYVAKKSGRNR 254
           LY AK +GRN+
Sbjct: 289 LYDAKHNGRNK 299


>gi|46908407|ref|YP_014796.1| GGDEF domain-containing protein [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|254931714|ref|ZP_05265073.1| GGDEF domain-containing protein [Listeria monocytogenes HPB2262]
 gi|46881678|gb|AAT04973.1| GGDEF domain protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|293583269|gb|EFF95301.1| GGDEF domain-containing protein [Listeria monocytogenes HPB2262]
 gi|328472195|gb|EGF43066.1| GGDEF domain-containing protein [Listeria monocytogenes 220]
 gi|332312625|gb|EGJ25720.1| GGDEF domain protein [Listeria monocytogenes str. Scott A]
          Length = 357

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 105/201 (52%), Gaps = 21/201 (10%)

Query: 74  ISITISLLLGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSAFISSLGSY----N 126
           I ++I+L++G +S  ++K +  S   + +  Q S +D L+ L N   F   +       +
Sbjct: 162 IFVSIALVIGAVSAGLMKNMIKSKQLFQKYEQDSTLDYLTRLSNVRQFDEKINHVMDDGS 221

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF------GTPMFVGRLGGEEF 180
            +++++  DIDYFK IND +GH  GD ++     QL ++       G+  F  R GGEEF
Sbjct: 222 RQVTLMLIDIDYFKNINDTYGHDAGDAILK----QLAIILKRNTSDGSEAF--RNGGEEF 275

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR- 239
           +   L    ++    A  +RK  E+    I SG  + ITIS G++        S  +++ 
Sbjct: 276 SIVLLDCPIEKGNFFAEQVRKETEDHDFMIPSGKLVKITISVGVSSSKDGANTSEGLFKS 335

Query: 240 ADQALYVAKKSGRNRVVCFSD 260
           AD+ALY AK +GRNR VC +D
Sbjct: 336 ADEALYKAKLTGRNR-VCIAD 355


>gi|315282939|ref|ZP_07871233.1| ggdef domain-containing protein [Listeria marthii FSL S4-120]
 gi|313613411|gb|EFR87261.1| ggdef domain-containing protein [Listeria marthii FSL S4-120]
          Length = 367

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 94/166 (56%), Gaps = 11/166 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYN------EKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q + +D L+GL N   F  +   ++N        LS++  DIDYFK++ND +GH VG+
Sbjct: 194 LQQSTILDPLTGLTNFRHFEKTFEAAFNYATLKKSNLSVIIIDIDYFKRVNDTYGHLVGN 253

Query: 153 KVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            V++  S  L+ + F     + R+GGEEFA      +  E   LA  +R+ +E   + I 
Sbjct: 254 GVLSTFSQMLLKISFPPNTVISRIGGEEFAIVLPNINVSETQYLAEKIRRKVEKIDVPIV 313

Query: 212 SGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255
           +  S+ ITISAGIA    +   S   +++ ADQALY AK++GRN+V
Sbjct: 314 ASGSV-ITISAGIANYDGENYPSANELLHAADQALYNAKRNGRNQV 358


>gi|170767858|ref|ZP_02902311.1| MASE2 domain/diguanylate cyclase [Escherichia albertii TW07627]
 gi|170123346|gb|EDS92277.1| MASE2 domain/diguanylate cyclase [Escherichia albertii TW07627]
          Length = 320

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 103/200 (51%), Gaps = 23/200 (11%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 125 LSLPII-IIYPLLFGWVSYQTAIKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 183

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 184 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 243

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII--YR 239
               G+  + A      + + + N  + +S+ P + + IS G+A      P++  +  YR
Sbjct: 244 VIMSGTPAENAITAMLRVHEGLNN--LRLSNAPQVVLRISVGVA------PLNPQMSHYR 295

Query: 240 -----ADQALYVAKKSGRNR 254
                AD ALY AKK+GRNR
Sbjct: 296 EWLKSADMALYKAKKAGRNR 315


>gi|194446695|ref|YP_002041251.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194405358|gb|ACF65580.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 570

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+ +  T  LL+ + +   ++K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 -YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            Y E     S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY AK+SGRNR +C SD
Sbjct: 542 LADKRLYYAKQSGRNR-ICASD 562


>gi|262158743|ref|ZP_06029856.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|262029316|gb|EEY47967.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
          Length = 461

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 94/170 (55%), Gaps = 6/170 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
           ++L  +  ++S L++ D L+G+ N  +F   L +   +   L+++ FDID FK IND FG
Sbjct: 289 QQLEEANQKLSYLAKTDSLTGIANRRSFFEHLEAEQTRSGSLTLMVFDIDDFKTINDRFG 348

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD  I F+   +     +  +  R+GGEEFA  A G + +E+  LA  + + +   +
Sbjct: 349 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 408

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             +++  S+ +TIS G A   H   P S  ++ AD  +Y  K++G+N+VV
Sbjct: 409 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 456


>gi|172038658|ref|YP_001805159.1| putative adenylate cyclase [Cyanothece sp. ATCC 51142]
 gi|171700112|gb|ACB53093.1| putative adenylate cyclase [Cyanothece sp. ATCC 51142]
          Length = 592

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 83/138 (60%), Gaps = 9/138 (6%)

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           ++ S++  D+D+FKQ ND +GHP GD+ +  ++ ++        FV R GGEEFA     
Sbjct: 449 KQTSLILCDVDHFKQYNDTYGHPAGDRCLQKVAKEIRTAIRRTDFVARYGGEEFAIILPR 508

Query: 187 SSEQEAAILAND-LRKIIENSQINISSGPSI---HITISAGIAERCHKEPIST--IIYRA 240
           +  QEA  +A   L K+I    +NIS   S+   ++TIS GI+    ++ +ST  +I +A
Sbjct: 509 TDRQEAKKIAQRILEKVIS---LNISHNTSLTSDYVTISCGISSLFLQDQLSTKRLINQA 565

Query: 241 DQALYVAKKSGRNRVVCF 258
           D+ALY AK+ GRNRV+ +
Sbjct: 566 DKALYQAKQEGRNRVIVY 583


>gi|149188686|ref|ZP_01866978.1| GGDEF family protein [Vibrio shilonii AK1]
 gi|148837596|gb|EDL54541.1| GGDEF family protein [Vibrio shilonii AK1]
          Length = 467

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/181 (35%), Positives = 90/181 (49%), Gaps = 8/181 (4%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDI 136
           LLL Y   +   EL  +   +  LS  D L+GL N   F+  L  Y      L+I+  DI
Sbjct: 275 LLLRYTVNTRTNELANANRELKVLSETDALTGLSNRRYFLEKLEKYRHTGGYLAIIVIDI 334

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAIL 195
           D FK+IND FGH  GDKVI  +++ +  +  +   + R+GGEEFA   +    E    + 
Sbjct: 335 DDFKKINDTFGHVQGDKVIKSVANSIRSLLKSDCVIARIGGEEFALVYVYQGFEYSYQLS 394

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            N  R I E    +I   P   +T+S G A         T +Y AD+ +YVAKK G+NR 
Sbjct: 395 QNICRSIRELDVKDICCQP---VTVSVGCAVYEDASECET-LYEADRLMYVAKKQGKNRA 450

Query: 256 V 256
           V
Sbjct: 451 V 451


>gi|313681775|ref|YP_004059513.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM
           16994]
 gi|313154635|gb|ADR33313.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM
           16994]
          Length = 602

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 84/165 (50%), Gaps = 11/165 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           ++ L+ +D L+ + N   F   LG        Y   LS++  DID+FK INDNFGH VGD
Sbjct: 442 LNNLATVDMLTQVTNRFEFDKMLGHSISVSKRYGRTLSVLLVDIDHFKLINDNFGHLVGD 501

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+   S  L         V R GGEEF      ++   A I+A  LR+ IE +      
Sbjct: 502 EVLKSFSSLLRQQIRQSDIVARWGGEEFIILLPDTALSSAIIMAEALRQRIEVNPFEAVG 561

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               +IT S G+AE    E    ++ RAD+ LY AK SGRNRVV 
Sbjct: 562 ----NITCSIGVAEFNSVEEADDLLQRADENLYRAKHSGRNRVVA 602


>gi|71735762|ref|YP_273743.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556315|gb|AAZ35526.1| GGDEF domain protein [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 323

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 20/222 (9%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L P   L   + +  + + + +   + +G++S  +  +L+   N + ++SR D L+GLLN
Sbjct: 100 LNPAVNLHGNMAQIYACLPVLVIYPIFIGWMSHQVTLKLWEHRNILRKISRTDSLTGLLN 159

Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
           H A+   L        + +++  I   DID+FK IND +GH +GD V+  +S+ L+    
Sbjct: 160 HGAWKDLLDLEYVKSQNQHQQCVIALIDIDHFKVINDTYGHLMGDTVLQNISEALMENLR 219

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-----SSGPSIHITISA 222
               +GR GG+EF      +   +A       R+I+E +++ I     S    + +++S 
Sbjct: 220 DSDLIGRCGGDEFCVILPDTHLFQA-------REILERTRLAIDEMTYSLQRDLKVSLSI 272

Query: 223 GIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           GIA    + P  S+ ++ AD+ALY+AK +GRN V    D+ +
Sbjct: 273 GIAAYSPELPDASSWLHEADKALYLAKSTGRNCVASAQDMPS 314


>gi|302337375|ref|YP_003802581.1| diguanylate cyclase with PAS/PAC sensor [Spirochaeta smaragdinae
           DSM 11293]
 gi|301634560|gb|ADK79987.1| diguanylate cyclase with PAS/PAC sensor [Spirochaeta smaragdinae
           DSM 11293]
          Length = 528

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 103/194 (53%), Gaps = 15/194 (7%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNE 127
           +I+ SLLL +   ++ K+   + +R+ +LS  D L+G+ N   F+S L         Y  
Sbjct: 340 TISDSLLLSFTDITLRKK---TESRLFELSLKDELTGIYNRRHFVSVLSQELQHYQRYGT 396

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            +S++ FDID FK IND +GHP GD ++  LS ++           R GGEEFA    G 
Sbjct: 397 PISLLLFDIDLFKIINDTWGHPAGDFILRELSSRIAGQIRDIDIFFRTGGEEFAVVMPGI 456

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALY 245
           + ++  I A  LR I+ ++   +     I +TIS G+  AE+ + +P S    +AD  LY
Sbjct: 457 TLEQGEIAAERLRVIVADTPF-LWESEEITVTISIGLAEAEQPNSDPKS-FFRKADDRLY 514

Query: 246 VAKKSGRNRVVCFS 259
            AKK GRN  VC S
Sbjct: 515 WAKKEGRN-CVCSS 527


>gi|289678107|ref|ZP_06498997.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 418

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 11/167 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +++  D L+GL N  +        I ++    +  S++  DID+FK +ND +GHP 
Sbjct: 255 QKLLEIAHSDPLTGLDNRRSAEHTLERQIPAVSMSGKPFSLIICDIDHFKAVNDRYGHPA 314

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VI  ++  L           R GGEEF      SS ++AA LA  +RK +E+  I  
Sbjct: 315 GDSVITSVAAILKQRIRLLDVAARWGGEEFLILVPDSSLKQAAELAERIRKSVESLVIPE 374

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +      +TIS G+AE    E  +++I RAD+ALY AK+ GRNRV C
Sbjct: 375 TGS----VTISLGVAELGAGETAASLIQRADKALYQAKRLGRNRVEC 417


>gi|317051149|ref|YP_004112265.1| diguanylate cyclase [Desulfurispirillum indicum S5]
 gi|316946233|gb|ADU65709.1| diguanylate cyclase [Desulfurispirillum indicum S5]
          Length = 549

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 80/159 (50%), Gaps = 10/159 (6%)

Query: 107 DCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLNH+         +      N  L     DID+FK++ND  GHPVGD+VI  LS
Sbjct: 389 DGLTGLLNHTESKRQLDILLERAKRANTPLCFAMLDIDHFKRVNDAHGHPVGDRVIKSLS 448

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHI 218
             L         VGR GGEEF      ++E +   +  +LR+    + +   +G  S   
Sbjct: 449 HFLQQRLRKTDVVGRYGGEEFVIIFPDTTESDGQRVMEELREKF--AMVTHHAGDQSFQC 506

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           T S GIA   H    + I+ RADQALY AK  GRN+V+ 
Sbjct: 507 TFSCGIATFPHFSNATEIVDRADQALYSAKNQGRNKVIA 545


>gi|71282198|ref|YP_270823.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71147938|gb|AAZ28411.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 431

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 95/173 (54%), Gaps = 11/173 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           N++  L+R D L+GL N +         +SS     E+LSI+  D+D+FK+IND+FGH +
Sbjct: 257 NKLILLTRTDALTGLSNRNTLFKHGEKMVSSFTEQPEELSILLLDLDHFKKINDSFGHDI 316

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+++  +SD +     +   + R GG+EF A    +   +A  +A  + + I  SQ + 
Sbjct: 317 GDEILMAVSDLVKETMRSRDLLARFGGDEFVALLPFADSNKAKAIAMRINEKI--SQYDF 374

Query: 211 SSGP-SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           SS      +T S G+A    +K     +++ AD A+Y AK  GRN V+C+ +I
Sbjct: 375 SSLVLQSRVTFSIGVATMADNKMSFDDLLHDADLAMYQAKDQGRNTVICYQNI 427


>gi|47091842|ref|ZP_00229637.1| GGDEF domain protein [Listeria monocytogenes str. 4b H7858]
 gi|47019853|gb|EAL10591.1| GGDEF domain protein [Listeria monocytogenes str. 4b H7858]
          Length = 307

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 105/201 (52%), Gaps = 21/201 (10%)

Query: 74  ISITISLLLGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSAFISS----LGSYN 126
           I ++I+L++G +S  ++K +  S   + +  Q S +D L+ L N   F       +   +
Sbjct: 112 IFVSIALVIGAVSAGLMKNMIKSKQLFQKYEQDSTLDYLTRLSNVRQFDEKINHVMDDGS 171

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF------GTPMFVGRLGGEEF 180
            +++++  DIDYFK IND +GH  GD ++     QL ++       G+  F  R GGEEF
Sbjct: 172 RQVTLMLIDIDYFKNINDTYGHDAGDAILK----QLAIILKRNTSDGSEAF--RNGGEEF 225

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR- 239
           +   L    ++    A  +RK  E+    I SG  + ITIS G++        S  +++ 
Sbjct: 226 SIVLLDCPIEKGNFFAEQVRKETEDHDFMIPSGKLVKITISVGVSSSKDGANTSEGLFKS 285

Query: 240 ADQALYVAKKSGRNRVVCFSD 260
           AD+ALY AK +GRNR VC +D
Sbjct: 286 ADEALYKAKLTGRNR-VCIAD 305


>gi|323495200|ref|ZP_08100284.1| putative GGDEF protein [Vibrio brasiliensis LMG 20546]
 gi|323310559|gb|EGA63739.1| putative GGDEF protein [Vibrio brasiliensis LMG 20546]
          Length = 321

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 90/177 (50%), Gaps = 15/177 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDN 145
           L  S  ++S LS+ D L+ L N + +  +L    E         S+V FDID+FK++ND 
Sbjct: 143 LMDSNQKLSNLSQTDGLTKLYNRAHWEVNLQKEYEHCQVTGEVSSLVIFDIDHFKRVNDT 202

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH VGD+VI   ++ L     +    GR GGEEF     G+   +A      LRK IE+
Sbjct: 203 YGHTVGDEVIRHAAEALKRASRSSDICGRYGGEEFTVILPGTCANQALYFTERLRKRIES 262

Query: 206 SQINISSGPSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNRVVCF 258
           S +       +  TIS G+   C   P+ +     +  AD++LY +K+SGRNR   F
Sbjct: 263 SVVKCEQ-HDVKYTISLGV---CEISPLQSSHLAWLEHADKSLYFSKESGRNRSTVF 315


>gi|144900928|emb|CAM77792.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 539

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 8/163 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           ++  +  D L+GL N   FI                L++++ D+D+FK INDN+GH +GD
Sbjct: 373 LTHQAMTDPLTGLCNRRHFILRANEELHRARRTGAPLAVLYLDVDHFKTINDNYGHGLGD 432

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  ++       G    + R+GGEEFAA   G  +  A + A  LR+ +         
Sbjct: 433 QVLVTVARACRDALGGEDLLARMGGEEFAAVLPGQDKVAAQMTAERLRRCLGEVVTRSED 492

Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           G  I ITIS G+A     +  + T++ RAD+ALY AK  GRNR
Sbjct: 493 GRLITITISIGVATLADDDGDMLTVLDRADRALYQAKTLGRNR 535


>gi|170720358|ref|YP_001748046.1| diguanylate cyclase [Pseudomonas putida W619]
 gi|169758361|gb|ACA71677.1| diguanylate cyclase [Pseudomonas putida W619]
          Length = 361

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 95/188 (50%), Gaps = 16/188 (8%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLS--I 131
            L LG++   +  +L     R+  LS  D L+GLLNH A+   L        N ++   I
Sbjct: 159 PLALGWVCYRLAIKLAEHKRRLRDLSLTDSLTGLLNHGAWKDLLLLRFQACQNLQMPSVI 218

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              DID+FK IND FGH VGD V+  +SD+L          GR GG+EF      +SE E
Sbjct: 219 ALIDIDHFKTINDTFGHVVGDCVLRKMSDELRRNLRAGDLAGRYGGDEFCVILPDTSESE 278

Query: 192 AAILANDLRKII---ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247
           A      LR+ I    + Q+     P + I++S G++  R   +     + +AD+ALY A
Sbjct: 279 ARQAMERLRERIVCYRDPQL-----PHLKISLSIGMSSFRADLQSPEHWLEKADKALYCA 333

Query: 248 KKSGRNRV 255
           K+ GR++V
Sbjct: 334 KRRGRDQV 341


>gi|120597069|ref|YP_961643.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|146291491|ref|YP_001181915.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
 gi|120557162|gb|ABM23089.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|145563181|gb|ABP74116.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
          Length = 486

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 107/211 (50%), Gaps = 23/211 (10%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLL 113
           L  F+G       NL+L +I +T+ +L  +IS   L      Y R +  ++  D L+G  
Sbjct: 288 LNTFWG-------NLALSLI-VTMGIL--FISNMTLGR----YQRKLEMMASTDKLTGAA 333

Query: 114 NHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N   F        +K       +SI+  DID+FK++ND++GH +GD V+  +++ L  + 
Sbjct: 334 NRQVFEEYFRQALDKAKLTQSPISILLLDIDHFKKVNDSYGHGMGDLVLKTMANMLRGLL 393

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                + R GGEEF           AA  A  +R +I   +I + +G  I IT S G+AE
Sbjct: 394 QPQDILCRWGGEEFLILLPEMDLSRAAEFAEQIRDLISLREIKV-NGLHISITASIGVAE 452

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +EP   +I RAD ALY AK +GRN+VV 
Sbjct: 453 HQAQEPAEDLIKRADLALYQAKAAGRNQVVL 483


>gi|134291268|ref|YP_001115037.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia vietnamiensis
           G4]
 gi|134134457|gb|ABO58782.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia vietnamiensis
           G4]
          Length = 432

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 85/155 (54%), Gaps = 7/155 (4%)

Query: 107 DCLSGLLNHSAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+GL N   F++     LG+ ++ LS+   DIDYFK+IND +GH +GD+V+  L+   
Sbjct: 276 DALTGLANRREFLNFVEKVLGT-DDLLSVFILDIDYFKKINDGYGHDIGDEVLRVLAKVG 334

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITIS 221
           + +        R GGEEF AA  G+   +   +A  LR+  E      +     I  T+S
Sbjct: 335 MSIPHESGLFARWGGEEFVAALPGADAADVRRIAETLRRRFEEQDFEHAWRVKPIQFTVS 394

Query: 222 AGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255
            G+  R   +  +  ++ RAD+ALY AK+SGRNR+
Sbjct: 395 IGVVTREAGERDVDALMRRADRALYAAKESGRNRI 429


>gi|330447521|ref|ZP_08311169.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491712|dbj|GAA05666.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 421

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/148 (37%), Positives = 77/148 (52%), Gaps = 5/148 (3%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D ++  L  + F     + N + S++ FDID+FK INDNFGH VGDKVI  +   L    
Sbjct: 275 DSMTHCLRRNVFDMKYKTLNSR-SVILFDIDHFKFINDNFGHAVGDKVIIAMGKMLQQQA 333

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                  R GGEEF      +++Q     A  LR  +E   +         +TIS G++E
Sbjct: 334 KKHHLYFRWGGEEFLVLLPKTNKQALLRYAETLRAAVEEMPL----LKDRKVTISLGVSE 389

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNR 254
           +  +E I   IYRAD ALY AK+ GRN+
Sbjct: 390 QKQQEHIHQTIYRADMALYQAKQLGRNK 417


>gi|149186785|ref|ZP_01865096.1| diguanylate cyclase with PAS/PAC sensor [Erythrobacter sp. SD-21]
 gi|148829693|gb|EDL48133.1| diguanylate cyclase with PAS/PAC sensor [Erythrobacter sp. SD-21]
          Length = 362

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 79/172 (45%), Gaps = 10/172 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           E      R  + +  D L+ L N  + ++ L           E LS++ FD+D+FK +ND
Sbjct: 191 EAIAQAERAKKEAETDALTELANRRSVMAELDRAVVRARQDGESLSVIVFDVDHFKHVND 250

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GHP GD+V+  +             VGR+ GEEF         Q A   A  LR  IE
Sbjct: 251 RHGHPAGDRVLGMIGKIAARQARERDVVGRIRGEEFLWIMPSCDVQSALRAAERLRWAIE 310

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                  S P   +TISAG AE    +   T+  RAD ALY AK+ GRNRV 
Sbjct: 311 ---AGTHSAPVPSVTISAGHAELQDGDAALTLFARADTALYNAKREGRNRVA 359


>gi|296447289|ref|ZP_06889217.1| response regulator receiver modulated diguanylate cyclase
           [Methylosinus trichosporium OB3b]
 gi|296255154|gb|EFH02253.1| response regulator receiver modulated diguanylate cyclase
           [Methylosinus trichosporium OB3b]
          Length = 455

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 92/166 (55%), Gaps = 8/166 (4%)

Query: 102 QLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+ +D L+GL N        ++ + +       L+++  DID+FK +ND+FGH  GD+V
Sbjct: 289 ELAAVDPLTGLNNRRYLETHLASLLDNAAHQGRALTLMILDIDHFKSVNDSFGHDAGDEV 348

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSG 213
           +   + ++  V  +   + RLGGEEF      +    A  +A  +R  I++    I ++G
Sbjct: 349 LKNFARRMRRVVRSADLICRLGGEEFVIVMPDTPLAIATRVAERVRATIQSEPFCIDAAG 408

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +I +T S GIAER  +    +++ RAD+ALY +K +GRNRV   +
Sbjct: 409 RTIPVTASIGIAERGREANPDSLLRRADKALYESKSAGRNRVTAAA 454


>gi|255025094|ref|ZP_05297080.1| ggdef domain protein [Listeria monocytogenes FSL J2-003]
          Length = 357

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 102/197 (51%), Gaps = 17/197 (8%)

Query: 76  ITISLLLGYISGSIL------KELFISYNRISQLSRIDCLSGLLNHSAFISS-LGSYNEK 128
           + I+L++G +S  ++      K+LF  Y + S L  +  LS +      I+  + S + +
Sbjct: 164 VLIALVIGAVSAGLMSNMIKSKQLFQKYEQDSTLDYLTKLSNVRQFDEKINHVMDSGSRQ 223

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAA 184
           ++++  DIDYFK IND +GH  GD ++     QL V+       G    R GGEEF+   
Sbjct: 224 VTLMLIDIDYFKNINDTYGHDAGDAIL----KQLAVILKESTTDGSEAFRNGGEEFSIVL 279

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQA 243
           L  S +E   +A  +RK  E     I  G  + ITIS G++        S  +++ AD+A
Sbjct: 280 LDCSIEEGNKVAEQVRKETEEHDFVIPGGQIVKITISVGVSSSKDGANTSEGLFKSADEA 339

Query: 244 LYVAKKSGRNRVVCFSD 260
           LY AK +GRNR VC +D
Sbjct: 340 LYKAKLTGRNR-VCIAD 355


>gi|152991274|ref|YP_001356996.1| hypothetical protein NIS_1532 [Nitratiruptor sp. SB155-2]
 gi|151423135|dbj|BAF70639.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 332

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/152 (38%), Positives = 80/152 (52%), Gaps = 3/152 (1%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ L N +A    +    E     S++  DID FK+IND FGH  GDKV+  L +   
Sbjct: 177 DPLTNLYNRNALKKEIKLLEEASLPYSVIIIDIDDFKKINDTFGHIAGDKVLRELGEIFH 236

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   V R GGEEF    L +    A  LA  L+++I +  I +  G +I +T S G
Sbjct: 237 TYVRKDSKVYRYGGEEFLIILLHTDIDGAKKLAQRLKEVISHHTIVLDDGTNIIVTASFG 296

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           IA++   E    ++ RADQALY AK+ G+NRV
Sbjct: 297 IAQKKGDESFERVLKRADQALYKAKRDGKNRV 328


>gi|144898743|emb|CAM75607.1| GGDEF domain [Magnetospirillum gryphiswaldense MSR-1]
          Length = 355

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 107/207 (51%), Gaps = 10/207 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI---- 119
           IL E   ++ ++  +   L   SG I + L    +++ + +  D L+GL N   F     
Sbjct: 139 ILDETKVMIEVNRQLEERLETSSGEIAR-LREDLDQLKREATTDALTGLANRKLFDVSLR 197

Query: 120 -SSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
            ++L S  ++  LS++  DID+FKQ ND  GH +GD+V+  ++  +           R G
Sbjct: 198 EAALESEEDRKFLSLLMIDIDFFKQFNDTHGHMLGDQVLKLVARTIQDCIKGKDTAARYG 257

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITISAGIAERCHKEPIS 234
           GEEFA     +  ++   +A  +R+ +   ++ N  +G  +  +T+S G+AE    E + 
Sbjct: 258 GEEFAIILPDTRLKDGVAVAETVRRQVAGRKVLNRRTGQVLGQVTLSVGVAEYEFGETLG 317

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDI 261
             I+RAD+ALY+AK+ GRN V    D+
Sbjct: 318 AFIHRADEALYLAKRQGRNHVASQDDL 344


>gi|288960271|ref|YP_003450611.1| GGDEF domain-containing protein [Azospirillum sp. B510]
 gi|288912579|dbj|BAI74067.1| GGDEF domain-containing protein [Azospirillum sp. B510]
          Length = 402

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 98/192 (51%), Gaps = 15/192 (7%)

Query: 81  LLGYISGSILKELFIS--YNR-ISQLSRIDCLSGLLNHSAFISSLGS--------YNEKL 129
           LLG + G+I   L  S  +NR +S+L+  D L+G LN       LG         +   L
Sbjct: 204 LLGTVIGAINYVLMASDEFNRELSKLAHTDGLTGSLNRRRLFE-LGEVEFRRSRRHGRAL 262

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID FK IND  GHP GD+VI  ++D           +GR+GGEEFA    G  E
Sbjct: 263 TVLTLDIDRFKSINDRAGHPFGDRVIQAVADCCAGQIRHEDVMGRIGGEEFAILLPGIGE 322

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVA 247
           +   +LA  LR  IE     + +   + +T S G     R H E  S +I ++D ALY A
Sbjct: 323 EAGRLLAERLRATIERQLAPLGTEGGVTVTCSIGGVSLTREHGE-FSDLIAQSDCALYDA 381

Query: 248 KKSGRNRVVCFS 259
           K +GRN+V  F+
Sbjct: 382 KNAGRNQVRFFA 393


>gi|227115159|ref|ZP_03828815.1| putative signaling protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 235

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 84/151 (55%), Gaps = 4/151 (2%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+G+ N  A I  +    E+   +++  DID+FKQ+ND +GHP GD VI  L  ++  
Sbjct: 84  DPLTGVYNRGAIIERINHALERNQAALIVLDIDHFKQVNDTYGHPTGDAVICDLVSRVQN 143

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           V  T   +GR+GGEEF     G++  +A  LA+ L + +  +++ +S  P   +T S G+
Sbjct: 144 VLNTTSSIGRVGGEEFTILLEGNTLMQAVSLASRLHQDL--NRMPLSVLPQQRVTASFGV 201

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +    K     +   AD ALY AK+ GRNRV
Sbjct: 202 SWAPQKTRFDALYGAADAALYQAKEKGRNRV 232


>gi|226224781|ref|YP_002758888.1| hypothetical protein Lm4b_02199 [Listeria monocytogenes Clip81459]
 gi|254825263|ref|ZP_05230264.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J1-194]
 gi|254853300|ref|ZP_05242648.1| GGDEF domain-containing protein [Listeria monocytogenes FSL R2-503]
 gi|254993341|ref|ZP_05275531.1| hypothetical protein LmonocytoFSL_10262 [Listeria monocytogenes FSL
           J2-064]
 gi|255521935|ref|ZP_05389172.1| hypothetical protein LmonocFSL_12057 [Listeria monocytogenes FSL
           J1-175]
 gi|300764018|ref|ZP_07074014.1| hypothetical protein LMHG_10737 [Listeria monocytogenes FSL N1-017]
 gi|225877243|emb|CAS05957.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258606660|gb|EEW19268.1| GGDEF domain-containing protein [Listeria monocytogenes FSL R2-503]
 gi|293594509|gb|EFG02270.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J1-194]
 gi|300515359|gb|EFK42410.1| hypothetical protein LMHG_10737 [Listeria monocytogenes FSL N1-017]
 gi|328465980|gb|EGF37161.1| hypothetical protein LM1816_07998 [Listeria monocytogenes 1816]
          Length = 357

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 105/201 (52%), Gaps = 21/201 (10%)

Query: 74  ISITISLLLGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSAFISSLGSY----N 126
           I ++I+L++G +S  ++K +  S   + +  Q S +D L+ L N   F   +       +
Sbjct: 162 IFVSIALVIGAVSAGLMKNMIKSKQLFQKYEQDSTLDYLTRLSNVRQFDEKINHVMDDGS 221

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF------GTPMFVGRLGGEEF 180
            +++++  DIDYFK IND +GH  GD ++     QL ++       G+  F  R GGEEF
Sbjct: 222 RQVTLMLIDIDYFKNINDTYGHDAGDAILK----QLAIILKRNTSDGSEAF--RNGGEEF 275

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR- 239
           +   L    ++    A  +RK  E+    I SG  + ITIS G++        S  +++ 
Sbjct: 276 SIVLLDCPIEKGNFFAEQVRKETEDHDFMIPSGKLVKITISVGVSSSKDGANTSEGLFKS 335

Query: 240 ADQALYVAKKSGRNRVVCFSD 260
           AD+ALY AK +GRNR VC +D
Sbjct: 336 ADEALYKAKLTGRNR-VCIAD 355


>gi|239995065|ref|ZP_04715589.1| diguanylate cyclase [Alteromonas macleodii ATCC 27126]
          Length = 586

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 114/225 (50%), Gaps = 28/225 (12%)

Query: 54  GLTP-----FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           GL P     F G+E  +V  +SL    ++ISL   Y      K++  +     + +R+D 
Sbjct: 374 GLIPYSKWAFRGIEIGMVLEMSL----LSISLAFNY------KQVQQARRNAERDARLDP 423

Query: 109 LSGLLNHSAF------ISSLGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ L N  AF      I  +G  + K +S++  DID+FK IND +GH +GDKV+  ++++
Sbjct: 424 LTSLYNRRAFEDLVYPIWEMGKRSNKFMSVMLIDIDWFKGINDKYGHDMGDKVLKKVAEE 483

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +           R GGEEF      +    A  +A +LR  +    IN      I +T+S
Sbjct: 484 IKGQVRGSDITFRWGGEEFLVFLPNTRVHYAKQIAENLRVHLFTHDIN----KFIRVTVS 539

Query: 222 AGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS-DIENN 264
            G+A     +E I+ +I ++DQALY+AK  GRN+  CF   I+N 
Sbjct: 540 IGVAGTSPGEEDINVLIKQSDQALYLAKAKGRNKKWCFGRKIQNK 584


>gi|229014577|ref|ZP_04171693.1| GGDEF domain protein [Bacillus mycoides DSM 2048]
 gi|228746729|gb|EEL96616.1| GGDEF domain protein [Bacillus mycoides DSM 2048]
          Length = 343

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 112/230 (48%), Gaps = 18/230 (7%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI---SGSILKE 92
           SIF   + F  N++   I + P Y    IL +++ +V++ +   ++  YI   S S + +
Sbjct: 118 SIFTKWIWF--NVYSLSILILPLY----ILFKDIYVVVLYLICCIVAAYITFVSASYVLQ 171

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
               +  +   + ID L+ L N   F       I S    N+ L ++  DID+FK +ND 
Sbjct: 172 SNELFQTMKHYATIDALTNLGNVRQFDFEMNRHIGSKHMKNDSLCLLLIDIDHFKYVNDT 231

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GHP GD+V+  L   L+     P  V R GGEEFA             +   +R  +E 
Sbjct: 232 YGHPAGDEVLKQLGRILLENAPFPNLVFRKGGEEFALLLPKKRVAFGNRIGEQIRLAVEK 291

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               + +G  I IT+S G++E  +K+     I  AD ALY +K++GRN+V
Sbjct: 292 HSFQLQNGEKIKITVSVGLSE--YKKSPEQFIQSADDALYYSKRNGRNKV 339


>gi|158521095|ref|YP_001528965.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3]
 gi|158509921|gb|ABW66888.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3]
          Length = 396

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/197 (35%), Positives = 102/197 (51%), Gaps = 14/197 (7%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNE 127
           V I+++++++L YI+    K   +  +   ++S +D L+ L N   FI      L S   
Sbjct: 198 VFITVSLTIML-YITIVTFKRWGVREDVYRKMSTVDGLTRLTNRRTFIERSEKELSSGQR 256

Query: 128 K----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
           +    +S +  DID+FK IND +GH  GDKV+  ++  L         VGR GGEEFA  
Sbjct: 257 RPSSHISCIMIDIDHFKAINDTYGHAAGDKVLVKIATILTEKARPTDEVGRYGGEEFAML 316

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI---IYRA 240
              ++   A  +A   R  I N++I I  G  I +T S G+A  C  + I  I   +  A
Sbjct: 317 LPATTLAGAVKVAERQRASIANAEI-IVDGNIIQVTASFGVAS-CPSDDIDNINELLKTA 374

Query: 241 DQALYVAKKSGRNRVVC 257
           D ALY AK++GRNRVV 
Sbjct: 375 DVALYEAKRAGRNRVVA 391


>gi|163784009|ref|ZP_02178970.1| GGDEF domain protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880719|gb|EDP74262.1| GGDEF domain protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 275

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 113/227 (49%), Gaps = 17/227 (7%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQL 103
           F+  IFLF+  +    GL  +    LS   I I IS+++ Y+  S++KE       + ++
Sbjct: 52  FLYGIFLFFTAVVHISGLVSLPYNPLSYFTILIIISIII-YVGNSVVKETLEKLLFLDKI 110

Query: 104 SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  D L+GL N    I  L +       YN  LSI+  DID FK+IND FGH  GDK++ 
Sbjct: 111 ANQDILTGLHNRKKLIEILKNELIRARRYNRPLSILLLDIDDFKKINDKFGHNFGDKILQ 170

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             +  L +        GR GGEEF      ++++ A  +A  +R +I N   +I      
Sbjct: 171 EFAKLLKMSLRNTDHAGRWGGEEFIIVLPETNKKNAVKVAEKIRNLIGNYFEDIYGKK-- 228

Query: 217 HITISAGIAE--RCHKEPISTIIYR----ADQALYVAKKSGRNRVVC 257
            IT+S G+ E      E I  I++     AD+ALY AK+ G+N+V  
Sbjct: 229 -ITVSIGLTEFKDWKNESIDVIMHEIIEIADKALYKAKRDGKNQVAV 274


>gi|326793638|ref|YP_004311458.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326544402|gb|ADZ89622.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 384

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 105/196 (53%), Gaps = 16/196 (8%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSL 122
           +L+++ I++ L+L Y     L  +F   N +++LS  D L+ L N   F       +   
Sbjct: 186 ALIVVFISMLLILSYS----LIVIFKQRNTLNRLSTEDPLTKLYNRRQFNLHLCKLVDRY 241

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG--RLGGEEF 180
            +    L++V FD+D+FK  NDN GH  GDK +  ++++L+ +    + +   R+GGEEF
Sbjct: 242 NNSRSPLTLVVFDVDFFKMFNDNRGHIAGDKALTQIAERLIALNSETLGLDAYRVGGEEF 301

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGI--AERCHKEPISTII 237
           A    G    ++  LA D+RK IE  +I + +S  S  IT+S G+  A +       T+ 
Sbjct: 302 ACLYCGLDYSDSLALAEDIRKTIEKLKIPHETSDISNCITVSIGVVNANQFEHATSDTMY 361

Query: 238 YRADQALYVAKKSGRN 253
             ADQALY AKK GRN
Sbjct: 362 SAADQALYEAKKRGRN 377


>gi|319764559|ref|YP_004128496.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|330826775|ref|YP_004390078.1| diguanylate cyclase [Alicycliphilus denitrificans K601]
 gi|317119120|gb|ADV01609.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|329312147|gb|AEB86562.1| diguanylate cyclase [Alicycliphilus denitrificans K601]
          Length = 396

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 120/257 (46%), Gaps = 20/257 (7%)

Query: 23  SPHT----FMIYFSIF--FSIFIATVIFIANIFLFYIGLTPFYG-LEYILVENLSLVIIS 75
           +PH      M+   +F  F++ +   + +A ++L  +G   +   L  +  + L L ++ 
Sbjct: 137 APHETAVLVMVMLGVFSPFAVSLWVQLLVALLYLACVGALAWAAPLPEVRAQMLRLEVVL 196

Query: 76  ITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------- 125
              +L+ G   Y      +E F+       L+  D L+GL N   F   +G         
Sbjct: 197 ALSALVFGFAAYWREHQRREQFLYRGDAHWLAMRDALTGLYNRRMFNHHIGQLVAQAQRE 256

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAA 184
            + L+++  D+DYFK  ND+ GH  GD V+  ++  ++   G P+  V R+GGEEFA   
Sbjct: 257 GQPLALLLMDVDYFKSYNDSHGHQQGDVVLQQVAQVVLACIGRPLDLVARVGGEEFAVLL 316

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYRADQA 243
            GSS + A  L   L   +    +  ++ P    +T+S G A    ++   T+  RAD+ 
Sbjct: 317 YGSSAEHAQALGQSLVAGVRQRALPHAASPVAQVVTVSVGGAMLSPQDQPRTLYARADRM 376

Query: 244 LYVAKKSGRNRVVCFSD 260
           LY AK  GR+R  C++ 
Sbjct: 377 LYEAKNGGRDR-CCWAQ 392


>gi|294140899|ref|YP_003556877.1| sensory box/GGDEF family protein [Shewanella violacea DSS12]
 gi|293327368|dbj|BAJ02099.1| sensory box/GGDEF family protein [Shewanella violacea DSS12]
          Length = 273

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 7/156 (4%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N + F   L   +++         ++ FD+D FK +ND +GHP+GDKV+   +
Sbjct: 116 DNLTGLNNRNYFDGQLVEISQQYKRFGHTFCVLMFDLDKFKMVNDTYGHPIGDKVLQEFA 175

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +   V      + R GGEEF A    +  + A  +AN +R+ I    +       +  T
Sbjct: 176 KKTKQVIREVDILARFGGEEFIALLPNTRLKAAKEVANRIRQRISQQIVLSQDHEPVTFT 235

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S G+AE    +   +II RAD ALY AK SGRNRV
Sbjct: 236 VSIGVAEFSPHDDTESIIKRADDALYRAKNSGRNRV 271


>gi|89098814|ref|ZP_01171695.1| hypothetical protein B14911_05124 [Bacillus sp. NRRL B-14911]
 gi|89086490|gb|EAR65610.1| hypothetical protein B14911_05124 [Bacillus sp. NRRL B-14911]
          Length = 532

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 9/177 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           +I +E+ +   ++ +L+  D L+G+ N + FI   G       +    +S++ FDIDYFK
Sbjct: 350 NITQEVLLR-QKLEELAFKDGLTGIYNRTYFIEQSGRLLKEAEAAGGTMSVILFDIDYFK 408

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+ +  ++     + G      R GGEEF     G+  + AA  A  +R
Sbjct: 409 NINDQYGHLQGDEALRHIARVSGSLLGGGSIFARYGGEEFVICLPGADLESAADQAEKIR 468

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             IE   +   +G  I +T S G AE      +  +++ AD ALY +K  GRNRV C
Sbjct: 469 AGIEEVFLPSETG-MISLTASFGAAEAAPGMTLERLLHNADTALYQSKNGGRNRVTC 524


>gi|332526563|ref|ZP_08402673.1| putative GGDEF domain signaling protein [Rubrivivax benzoatilyticus
           JA2]
 gi|332110829|gb|EGJ11006.1| putative GGDEF domain signaling protein [Rubrivivax benzoatilyticus
           JA2]
          Length = 562

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 91/180 (50%), Gaps = 15/180 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           +L  +   +++L+  D L+GL N  AF         +         ++  DID+FK +ND
Sbjct: 385 QLSQANEELARLAAQDALTGLANRRAFEQRAAEEEARCRRSGTGFGLLLLDIDHFKDVND 444

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKI 202
            FGH  GD+V+  ++  L         V RLGGEEFA     LG S  +   +A  +R+ 
Sbjct: 445 RFGHATGDQVLQQIARLLESATRETDLVARLGGEEFAVLLPELGES-ADTLRVAEKIRQA 503

Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           I+ +      GP   +T+S G A+   +  P+   + RAD+ALY AK++GRNR V   D+
Sbjct: 504 IQAAHF----GPVGEVTVSVGCAKGDGNDTPVQLALRRADEALYKAKQAGRNRCVAADDL 559


>gi|320181636|gb|EFW56551.1| Protein YaiC [Shigella boydii ATCC 9905]
          Length = 371

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 107/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P+++ +  Y
Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNSQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367


>gi|255022428|ref|ZP_05294414.1| ggdef domain protein [Listeria monocytogenes FSL J1-208]
          Length = 357

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 102/197 (51%), Gaps = 17/197 (8%)

Query: 76  ITISLLLGYISGSIL------KELFISYNRISQLSRIDCLSGLLNHSAFISS-LGSYNEK 128
           + I+L++G +S  ++      K+LF  Y + S L  +  LS +      I+  + + + +
Sbjct: 164 VLIALVIGAVSAGLMSNMIKSKQLFQKYEQDSTLDYLTKLSNVRQFDEKINHVMDAGSRQ 223

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAA 184
           ++++  DIDYFK IND +GH  GD ++     QL V+       G    R GGEEF+   
Sbjct: 224 VTLMLIDIDYFKNINDTYGHDAGDAIL----KQLAVILKASTTDGSEAFRNGGEEFSIVL 279

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQA 243
           L  S +E   +A  +RK  E     I  G  + ITIS G++        S  +++ AD+A
Sbjct: 280 LDCSIEEGNKVAEQVRKETEEQDFVIPGGQIVKITISVGVSSSKDGANTSEGLFKSADEA 339

Query: 244 LYVAKKSGRNRVVCFSD 260
           LY AK +GRNR VC +D
Sbjct: 340 LYKAKLTGRNR-VCIAD 355


>gi|74316654|ref|YP_314394.1| diguanylate cyclase [Thiobacillus denitrificans ATCC 25259]
 gi|74056149|gb|AAZ96589.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 559

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 12/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           + L ++  R+  L+ +D L+G+ N   F       IS        LS++ FDID+FK +N
Sbjct: 371 EALEVANRRLKALASVDSLTGISNRRHFVEQAKAEISRARRQGLPLSVIMFDIDFFKTVN 430

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGH  GD+ +  L+  +           RLGGEEF     G    +A   A+ +R ++
Sbjct: 431 DRFGHEAGDQTLKALTSTVSGNLRAGDIFARLGGEEFILMLPGQGLGDAVQTADRVRALV 490

Query: 204 -ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            E S+ +      + IT+SAG+A     E +  ++ +AD+ALY AK  GR+RV
Sbjct: 491 AETSRTHY----PVPITLSAGVAGLAGSEDLDGLLRQADRALYAAKHQGRDRV 539


>gi|238785724|ref|ZP_04629698.1| Diguanylate cyclase [Yersinia bercovieri ATCC 43970]
 gi|238713364|gb|EEQ05402.1| Diguanylate cyclase [Yersinia bercovieri ATCC 43970]
          Length = 319

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 95/184 (51%), Gaps = 12/184 (6%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIV 132
           LLG ++    K L  +   + ++S  D L+GL N        H+ F  S   Y    +++
Sbjct: 135 LLGLVTYRTAKRLAENREELLRISVRDGLTGLYNRRHWEHQLHNQF-DSCRRYQHGATLI 193

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID FK IND FGH VGD  I  L+++L++       VGR GG+EF A    ++ ++ 
Sbjct: 194 LLDIDNFKSINDTFGHAVGDDAITVLAEELLLGLRAIDIVGRYGGDEFGAILPNTTAEQT 253

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSG 251
             +   +++ + N  +     PS+ + +SAGIA+  H        +  AD ALY+AK +G
Sbjct: 254 REVLTRIQEKLAN--LVFEQAPSLQLRVSAGIADYRHDMINYQQWLKAADSALYLAKDNG 311

Query: 252 RNRV 255
           RNR+
Sbjct: 312 RNRI 315


>gi|328473496|gb|EGF44342.1| GGDEF domain-containing protein [Listeria monocytogenes 220]
          Length = 215

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 13/167 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q + +D L+GL N   F  +   ++N        LS++  DIDYFK++ND +GH VG+
Sbjct: 42  LQQSTILDPLTGLTNFRHFEKAFEAAFNHATLKKSNLSVIIIDIDYFKRVNDTYGHLVGN 101

Query: 153 KVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            V++  S  L+ + F     + R+GGEEFA      +  E   LA  +R+ +E   + I 
Sbjct: 102 GVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPIV 161

Query: 212 SGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  S+ ITISAGIA    R +  P + ++  ADQALY AK++GRN+V
Sbjct: 162 ASGSV-ITISAGIANYDGRNYPNP-NELLNAADQALYNAKRNGRNQV 206


>gi|320334940|ref|YP_004171651.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
 gi|319756229|gb|ADV67986.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
          Length = 368

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 87/178 (48%), Gaps = 22/178 (12%)

Query: 97  YNRISQLSR----------IDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYF 139
           Y+R S L R          +D L+GL N  AF  SL    E+       LSI+  DID+F
Sbjct: 188 YSRQSSLERERDVLEQYAFVDALTGLHNRRAFEQSLAQEAERAQHNGQPLSIIALDIDHF 247

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND FGH  GD V+  L+  +         V R GGEEF           A   A  +
Sbjct: 248 KRVNDTFGHDAGDHVLKDLARIVRREVRATDVVARWGGEEFILLLPTMDLPVAQACAERI 307

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R+ ++  +   S+GP   +++S G+A     E    +  RAD ALY AK++GRNRVV 
Sbjct: 308 RRAVDAHE--FSTGP---LSVSLGVATLLRGEDTGALFGRADAALYSAKRAGRNRVVT 360


>gi|254784885|ref|YP_003072313.1| GGDEF domain-containing protein [Teredinibacter turnerae T7901]
 gi|237684770|gb|ACR12034.1| GGDEF domain protein [Teredinibacter turnerae T7901]
          Length = 439

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 110/217 (50%), Gaps = 9/217 (4%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK--ELFISYNRISQLSRIDC 108
           +Y+ +  F+ +  +LV     V +   +S     ++ +I K  +L     +  +LS+ID 
Sbjct: 220 WYLVIGCFWFVALLLVSFQKYVTLRRQVSDSAQKLNEAITKARKLEAESAKYRELSQIDQ 279

Query: 109 LSGLLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           L+  LN    + ++  Y+   S     ++  D+D+FKQINDN+GH  GDKV+A +   L 
Sbjct: 280 LTQTLNRRGLMQTIDRYDHAKSWFSTAVILLDVDHFKQINDNYGHNSGDKVLAQIGRILR 339

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
               T   VGR GGEEF      ++   A  +A  +R II+    +I +     +++S G
Sbjct: 340 ENVRTQDDVGRWGGEEFILVCPKTTAAGATAIAEKIRAIIDYKTFSIEN--DFRVSVSVG 397

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           I+     E    + +RAD ALY AK SGRN VV  ++
Sbjct: 398 ISIGHRSEHFEDVYHRADHALYEAKNSGRNCVVVAAE 434


>gi|320335019|ref|YP_004171730.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
 gi|319756308|gb|ADV68065.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
          Length = 359

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 15/163 (9%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           L+ +D L+GL N    ++ LG +     +  LS++ FD+D+FK++ND FGH VGD V+  
Sbjct: 203 LANLDALTGLPNRRQLLTWLGEHVPVQTDAPLSVILFDLDHFKRVNDTFGHDVGDDVLRA 262

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP--- 214
            +  +          GR GGEEF     G+    A  +A  +R         ++SGP   
Sbjct: 263 TAAVMGGALRRETPFGRWGGEEFLVVLPGADVAHAQAVAERVRS-------ALASGPMTR 315

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  +T S G+ +    E +  ++ RAD ALY AK +GR++V+ 
Sbjct: 316 AGRVTASFGVTQAQPGESVEGVLKRADDALYAAKHAGRDQVLA 358


>gi|32473997|ref|NP_866991.1| response regulatory protein [Rhodopirellula baltica SH 1]
 gi|32444534|emb|CAD74533.1| probable response regulatory protein [Rhodopirellula baltica SH 1]
          Length = 824

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 59/157 (37%), Positives = 84/157 (53%), Gaps = 9/157 (5%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N + F S L          N   S++  DID+FKQ+ND  GHP GD+ +   +
Sbjct: 514 DPLTGIANRAEFDSRLVRATADSKKNNSTFSLIICDIDHFKQVNDVHGHPAGDEALVQFA 573

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF   A+ S    AA  A  +RK IE + ++  +G S  +T
Sbjct: 574 RVLESHARDEDLVARYGGEEFVFLAINSDNATAARRAEQIRKAIEVTPLDGLNGES--VT 631

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +S G+ E    +   TI+ R+D+AL  AK++GRNRVV
Sbjct: 632 VSFGVTEYQTGDAAETILARSDRALLQAKENGRNRVV 668


>gi|16801341|ref|NP_471609.1| hypothetical protein lin2277 [Listeria innocua Clip11262]
 gi|16414789|emb|CAC97505.1| lin2277 [Listeria innocua Clip11262]
          Length = 357

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 104/199 (52%), Gaps = 21/199 (10%)

Query: 76  ITISLLLGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSAFISS----LGSYNEK 128
           ++I+L++G +S  ++K +  S   + +  Q S +D L+ L N   F       + + + +
Sbjct: 164 VSIALVIGAVSAGLMKNMIKSKQLFQKYEQDSTLDYLTRLSNVRQFDEKINHVMDAGSRQ 223

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF------GTPMFVGRLGGEEFAA 182
           ++++  DIDYFK IND +GH  GD ++     QL ++       G+  F  R GGEEF+ 
Sbjct: 224 VTLMLIDIDYFKNINDTYGHDAGDAIL----KQLAIILKRNTSDGSEAF--RNGGEEFSI 277

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-AD 241
             L    ++    A  +RK  E     I SG  + ITIS G++        S  +++ AD
Sbjct: 278 VLLDCPIEKGNFFAEQVRKETEEHDFMIPSGKLVKITISVGVSSSKDGANTSEGLFKSAD 337

Query: 242 QALYVAKKSGRNRVVCFSD 260
           +ALY AK +GRNR VC +D
Sbjct: 338 EALYKAKLTGRNR-VCIAD 355


>gi|186681071|ref|YP_001864267.1| diguanylate cyclase [Nostoc punctiforme PCC 73102]
 gi|186463523|gb|ACC79324.1| diguanylate cyclase [Nostoc punctiforme PCC 73102]
          Length = 340

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 13/201 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ 118
           L  N  L++  +T+    G       ++L  + + +S ++  D L+ L N  A       
Sbjct: 128 LTANHGLILAQLTV----GLRKAQKYRDLIRTNDMLSAIALADSLTELNNRRALEWDLPR 183

Query: 119 -ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
            I    +    LS++  D+D+FK++ND  GH VGD+++  L  +L           R GG
Sbjct: 184 QIQRARTQKTSLSLIILDVDHFKKVNDTHGHLVGDRILQILCQRLRHNLRCQDTAFRYGG 243

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPIST 235
           EEF      ++++EA ++A  L +++ +    +S+  +I+ITIS G A  +    E   +
Sbjct: 244 EEFVILLANTTDEEALLVARRLNRVVSDEPFALSNKLTINITISLGTASLQADDDEQGES 303

Query: 236 IIYRADQALYVAKKSGRNRVV 256
           ++ RADQ L  AK +GRNRV+
Sbjct: 304 LLNRADQCLLQAKNAGRNRVI 324


>gi|254000471|ref|YP_003052534.1| diguanylate cyclase [Methylovorus sp. SIP3-4]
 gi|313202431|ref|YP_004041089.1| diguanylate cyclase [Methylovorus sp. MP688]
 gi|253987150|gb|ACT52007.1| diguanylate cyclase [Methylovorus sp. SIP3-4]
 gi|312441747|gb|ADQ85853.1| diguanylate cyclase [Methylovorus sp. MP688]
          Length = 622

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 91/179 (50%), Gaps = 14/179 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            ++ EL    + IS+++  D L+G LN      ++         +   LSI   DID+FK
Sbjct: 420 KLIDELTRRLDHISEVAHEDYLTGTLNRRGMDEAMEREFARADRHGTPLSIAMMDIDHFK 479

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+NDN GH  GD+ +  L   +         + R GGEEF    L S++Q+ A+   D+ 
Sbjct: 480 QLNDNLGHATGDQALIHLVRIVKYSLRNTDVLARYGGEEFIII-LPSTKQDEAM---DIM 535

Query: 201 KIIENSQIN---ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           K ++        +     + IT SAG+AER   E   TI+ RAD ALY AK SGRN+V+
Sbjct: 536 KRVQRDLTKNFFMHRNERVLITFSAGVAERLPGEGPETIVPRADAALYKAKHSGRNQVI 594


>gi|225867397|ref|YP_002752775.1| GGDEF domain protein [Bacillus cereus 03BB102]
 gi|225788193|gb|ACO28410.1| diguanylate cyclase (GGDEF) domain protein [Bacillus cereus
           03BB102]
          Length = 351

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 113/233 (48%), Gaps = 24/233 (10%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91
           S+F   + F  N++  +I   P +    IL +++S+V + +  S +  YI+      +L+
Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLF----ILFKDMSIVALYLVCSSVAAYITFISANYVLQ 179

Query: 92  --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
             ELF    ++ Q + ID L+GL N   F       I +    N  L ++  DID+FK +
Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSV 236

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GHP GD+V+  +   L  V   P    R GGEEFA             +   +R  
Sbjct: 237 NDTYGHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRTA 296

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E     +  G  I IT+S GI+   +++     I  AD ALY +K++GRN+V
Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|224372148|ref|YP_002606520.1| diguanylate cyclase (GGDEF) domain protein [Nautilia profundicola
           AmH]
 gi|223588436|gb|ACM92172.1| diguanylate cyclase (GGDEF) domain protein [Nautilia profundicola
           AmH]
          Length = 558

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 96/196 (48%), Gaps = 9/196 (4%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISS 121
           L +++  I++ + +      IL+EL  S   + + S  D L+ L N        S  +  
Sbjct: 357 LEMLLNKISVPVAISLEKELILRELEDSNKMLYEKSISDPLTKLYNREYMKEFLSQKVQE 416

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              Y   LS+   DID+FK+IND +GH +GD V+  L++ L   F     V R GGEE  
Sbjct: 417 AKRYKFPLSVAMIDIDFFKKINDTYGHLIGDCVLKELAELLKDNFRGSDIVSRYGGEEIF 476

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                +    A     + RK +E    +      I ITISAG++E    E I  +I +AD
Sbjct: 477 IIMPFTDGINACKKLENFRKFVEEH--DFCEKKRIKITISAGVSEFDFGEDIEDLILKAD 534

Query: 242 QALYVAKKSGRNRVVC 257
           + +Y AKK GRN+VVC
Sbjct: 535 RKVYFAKKQGRNKVVC 550


>gi|157963009|ref|YP_001503043.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157848009|gb|ABV88508.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
          Length = 627

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 87/165 (52%), Gaps = 11/165 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S L+  D L+ L N     +    Y        + LS + FD DYFK IND +GH VGD
Sbjct: 462 LSALALTDDLTQLPNRRYIYTQAQDYFESAIKNQQALSCISFDADYFKLINDRYGHEVGD 521

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  L+D    V GT     R+GGEEF      + + +A  +A  L   + N+  + S 
Sbjct: 522 ETLKLLADTCRAVLGTQYEAARVGGEEFLILLPHTDKAQALKVAQHLVNQVRNA--DFSP 579

Query: 213 GPS-IHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
            P    ITISAG++      + +S ++ RAD+ALY+AKK GR++V
Sbjct: 580 FPEGFSITISAGVSSLSETDDKLSQLLKRADEALYLAKKQGRDQV 624


>gi|320354451|ref|YP_004195790.1| diguanylate cyclase [Desulfobulbus propionicus DSM 2032]
 gi|320122953|gb|ADW18499.1| diguanylate cyclase [Desulfobulbus propionicus DSM 2032]
          Length = 528

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 111/227 (48%), Gaps = 20/227 (8%)

Query: 51  FYIGLTPFYGLEYILVE-NLSLVIISITIS-----LLLGYISGSILKELFISYNRI-SQL 103
           F I + P   +  IL E NL L +I+++       L+   +    L E     NR+   L
Sbjct: 293 FGIKINPVKSVAEILQEANLRLSLINLSYEEMNRELIKSKMELERLTEELSQKNRLLENL 352

Query: 104 SRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           + ID L+ + NH  F   L S        +  LS++  DID+FK+ ND +GH  GD ++ 
Sbjct: 353 ANIDGLTEVSNHRFFQHFLDSEINRAIRNDRPLSLLLADIDHFKKFNDTYGHQTGDFILK 412

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PS 215
                   V      + R GGEEFA     +S++EA I+A  LRK +E  ++    G  S
Sbjct: 413 EFCRITKEVIREYDLLARYGGEEFAYVLPETSQEEAQIVAEKLRKTVE--EVTFDDGRQS 470

Query: 216 IHITISAGIA-ERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFS 259
            H+TIS G+A  R   E  S    I  AD+ALY AK  GRNR+  ++
Sbjct: 471 YHVTISIGVATARPGVEDFSKNDFIGAADEALYEAKNGGRNRIALYT 517


>gi|224824914|ref|ZP_03698020.1| response regulator receiver modulated diguanylate cyclase [Lutiella
           nitroferrum 2002]
 gi|224602585|gb|EEG08762.1| response regulator receiver modulated diguanylate cyclase [Lutiella
           nitroferrum 2002]
          Length = 408

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 82/160 (51%), Gaps = 4/160 (2%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           +  L+  D L+GL N       +        I   DID+FKQIND FGH VGD VI  L+
Sbjct: 253 LEHLAHADPLTGLSNRRHLFEQVQKIRGAYGIAIIDIDHFKQINDGFGHDVGDVVIQHLA 312

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           D+L   F     V R GGEEF       +    A    +LR+ +E  +++   G ++  T
Sbjct: 313 DRLREHFPR-AIVARFGGEEFVVLMKRDAAHPLAQRLEELRQEVEREEVDSHKG-TVRYT 370

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           IS G+A     + I  ++  AD+ LY AK++GRNR VC S
Sbjct: 371 ISIGMAAATAPD-IRELLRLADERLYKAKQNGRNR-VCAS 408


>gi|222086325|ref|YP_002544858.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221723773|gb|ACM26929.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 415

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 96/177 (54%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           E  +   ++  L+  D L+GL N   F       ++         S+   DID+FK++ND
Sbjct: 233 ETLLQLKQLRVLAASDYLTGLYNRRYFYDQGPRIVNECLRRQRPSSVAILDIDHFKKLND 292

Query: 145 NFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH +GD+V+  ++D+L  +F G+   + RLGGEEFA     +  + A  + +D+R  +
Sbjct: 293 TYGHEIGDQVLKAVADRLRSLFEGSDSLLSRLGGEEFAILFTETDSRAATAICDDVRVSL 352

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            N ++N +    + +T+S G+AE    E     +  ADQ LY+AK +GRN+V  +SD
Sbjct: 353 SNLKVN-ADDEELSVTVSIGVAEIAGYEAFENYLNAADQFLYMAKHNGRNQV--YSD 406


>gi|187921653|ref|YP_001890685.1| PAS/PAC sensor-containing diguanylate cyclase [Burkholderia
           phytofirmans PsJN]
 gi|187720091|gb|ACD21314.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia phytofirmans
           PsJN]
          Length = 312

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 104/202 (51%), Gaps = 11/202 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           L+    +V + +TIS +  ++S  + +E   +  ++ + +  D L+G+ N   F + L  
Sbjct: 113 LMREREVVAVCVTISDVT-HVS-IVQREREEAVAKLQEYADRDGLTGIANRRFFEARLRD 170

Query: 125 -------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   +S++ FD+D+FK+IND FGH VGD V+  ++ ++  V       GR GG
Sbjct: 171 EYTRWQRYGGDMSVLLFDLDHFKKINDQFGHGVGDTVLRVMAQRVAEVVRAQDTFGRFGG 230

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTI 236
           EEFA     +  ++A  +A  +R  I ++ + +  G  + +T S G A  R        +
Sbjct: 231 EEFALLLPCTPLEDAMRVAEKIRCTIADTPVEV-QGTCVPVTASVGGASARVGVPSYDVL 289

Query: 237 IYRADQALYVAKKSGRNRVVCF 258
           I  AD ALY AK+ GRNR V F
Sbjct: 290 INEADAALYSAKRQGRNRSVAF 311


>gi|187730193|ref|YP_001879091.1| diguanylate cyclase AdrA [Shigella boydii CDC 3083-94]
 gi|187427185|gb|ACD06459.1| MASE2 domain/diguanylate cyclase [Shigella boydii CDC 3083-94]
          Length = 366

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II +   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 171 LSLPII-VVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 229

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 230 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 289

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 290 VIMSGTPA-ESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 340

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 341 REWLKSADLALYKAKKAGRNRT 362


>gi|152987658|ref|YP_001350884.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150962816|gb|ABR84841.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 542

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 10/160 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +  L             LS    DID+FKQ+ND FGHP+GD+VI  L+
Sbjct: 380 DSLTGLYNHTHTLQLLEDARLRARRDGRPLSFAMLDIDHFKQVNDRFGHPMGDRVIKGLA 439

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L         +GR GGEEFA     +    A ++ +++R+    ++I+  + P+ +  
Sbjct: 440 LFLKQRLRKTDHIGRYGGEEFAVVLPDTDLDAARLVLDEIRQRF--AEIHYPAQPADLRC 497

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           T S GIAE      I ++  +AD+ALY AK  GRNR+  +
Sbjct: 498 TFSCGIAELTPDLDIKSMAKQADEALYRAKHGGRNRIEVY 537


>gi|329889382|ref|ZP_08267725.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328844683|gb|EGF94247.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 352

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 102/220 (46%), Gaps = 38/220 (17%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNR--------ISQLSR---IDCLSGLLN 114
            ++L +++ S++ +        S L+    S NR        + Q+ R    D L+ L N
Sbjct: 132 TDSLGVIVSSLSDATRRIRRHTSALERRLESSNREVVKLRDHLEQVRRDAMTDALTNLAN 191

Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
             AF   L        S    + +   DID+FK+ ND +GH  GD+V+ +++  L  +  
Sbjct: 192 RKAFDEQLQRMCDEAESDGTPIGLALIDIDHFKRFNDTWGHQTGDQVLRYVASVLARIAR 251

Query: 168 TPMFVGRLGGEEFA-----------AAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
           TP    R GGEEFA            AAL ++ +E  I +  LR+   N  +        
Sbjct: 252 TPRVAARYGGEEFAVIFPRETAGAVEAALNAAREE--IASRSLRRRSTNDDLGA------ 303

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +TIS G A R   E  S  + RAD+ALY +K++GRNRV 
Sbjct: 304 -VTISVGFALRHSGEAASHFLGRADEALYASKRTGRNRVT 342


>gi|253690643|ref|YP_003019833.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251757221|gb|ACT15297.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 480

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 103/214 (48%), Gaps = 31/214 (14%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLL 113
           + L Y+   N S++II++ I+              FI+ NR     I  +S  D L+G+L
Sbjct: 276 FELSYLFQINTSVIIITVLIA------------SFFINKNRKNIKRIELISNHDALTGML 323

Query: 114 NHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           N  +          S+    N+ +S++  DID+FK++ND +GH VGD VI   S  L   
Sbjct: 324 NRRSLNQHMMNIINSTRDGDNKIMSLLVLDIDHFKKVNDTYGHAVGDNVIREFSTTLKQY 383

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                 + R GGEEF     G S  +   +A  +R IIE + + IS G  +  T S G++
Sbjct: 384 TRPQDLLCRWGGEEFLIIIQGLSVNDCLDIAERIRSIIEGAPLAISDGHIVRCTTSIGVS 443

Query: 226 ----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               ER   E        AD+ LY+AK+ GRNRV
Sbjct: 444 FFQLERI--EDFHEAFKEADELLYMAKEQGRNRV 475


>gi|268679692|ref|YP_003304123.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617723|gb|ACZ12088.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 458

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 109/210 (51%), Gaps = 17/210 (8%)

Query: 62  EYILVENLSLVIISITISLLLGYIS-GSILKELFI---SYN-RISQLSRIDCLSGLLNHS 116
           +Y+ ++  ++    + + L+LG+I+ G I    ++    YN  +  LS  D L+ + N  
Sbjct: 253 KYVSIKAQTVHDYDLIVKLILGFIALGMIFLWRYLELRKYNLELLYLSETDLLTKIYNRM 312

Query: 117 AFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
                L +  ++       L ++  DID+FK++ND FGHP+GD+V+  ++  + +     
Sbjct: 313 KIEKLLLTLTQEAHQKRTFLCVLLLDIDHFKKVNDTFGHPIGDQVLIQMATLIKISLREG 372

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
            F+GR GGEEF      +S +E   +   L++ ++ ++         H T+S G+A    
Sbjct: 373 DFLGRWGGEEFLMICPNTSLEEGFKIGERLQECVKKAEFPTQQ----HHTVSIGVAMLHE 428

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +E    +I RAD ALY AKKSGRN  VC S
Sbjct: 429 EESAYDVIVRADNALYHAKKSGRNN-VCVS 457


>gi|229170119|ref|ZP_04297808.1| GGDEF domain protein [Bacillus cereus AH621]
 gi|228613350|gb|EEK70486.1| GGDEF domain protein [Bacillus cereus AH621]
          Length = 343

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 112/230 (48%), Gaps = 18/230 (7%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI---SGSILKE 92
           SIF   + F  N++   I + P Y    IL +++ +V++ +   ++  YI   S S + +
Sbjct: 118 SIFTKWIWF--NVYSLSILILPLY----ILFKDIYVVVLYLICCIIAAYITFVSASYILQ 171

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
               +  +   + ID L+ L N   F       I S    N+ L ++  DID+FK +ND 
Sbjct: 172 SNELFQTMKHYATIDALTNLGNVRQFDFEMNRHIDSKHMKNDSLCLLLIDIDHFKYVNDT 231

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GHP GD+V+  L   L+     P  V R GGEEFA             +   +R  +E 
Sbjct: 232 YGHPAGDEVLKQLGRILLENAPFPNLVFRKGGEEFALLLPKKRVAFGTRIGEQIRLAVEK 291

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               + +G  I IT+S G++E  +K+     I  AD ALY +K++GRN+V
Sbjct: 292 HLFQLQNGGKIKITVSVGLSE--YKKSPEQFIQSADDALYYSKRNGRNKV 339


>gi|215485467|ref|YP_002327898.1| diguanylate cyclase AdrA [Escherichia coli O127:H6 str. E2348/69]
 gi|215263539|emb|CAS07869.1| predicted diguanylate cyclase [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 371

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNAPQVTLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367


>gi|327480824|gb|AEA84134.1| sensory box/GGDEF family protein [Pseudomonas stutzeri DSM 4166]
          Length = 320

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 105/232 (45%), Gaps = 33/232 (14%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN---------- 98
            L +    P  GLE  + +N +L        L L  I+GSI +   I Y+          
Sbjct: 94  LLRFKNYQPITGLEDFMYQNTTL--------LPLKGINGSIDQVCLIIYDVTDVAINRRQ 145

Query: 99  ------RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
                  + +LS  D L+GL N   +   L         Y+ + ++V FDID+FK IND 
Sbjct: 146 LQAANAELQRLSSTDRLTGLYNRGHWEEMLRLDYARHRRYDSQAALVMFDIDHFKSINDT 205

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH VGD VI  +++ +          GR GGEEF      + +Q A   A  LR  +E+
Sbjct: 206 YGHQVGDAVIQQVAELIRENLRDSDVAGRYGGEEFVVLLPDTDKQGALTFAERLRHAVES 265

Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            ++       I  TIS G+A+        + +I  AD ALY +K +GRNRV 
Sbjct: 266 HEVQ-HEQHRIRFTISLGVADLSVPSSSHAQLIEWADSALYASKAAGRNRVT 316


>gi|304407276|ref|ZP_07388929.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9]
 gi|304343717|gb|EFM09558.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9]
          Length = 440

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 101/180 (56%), Gaps = 11/180 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-GSYN------EKLSIVFFDIDYFKQI 142
           L+ +  S + + QLS  D L+G+ N   +  +L   +N      + LS++ FDIDYFK  
Sbjct: 252 LRTMLDSNHVLKQLSSRDGLTGIANRRCYDETLEREWNRLAIASKPLSLILFDIDYFKPF 311

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GDK +  +++ L      P     R GGEEFA      S ++A  +A  +++
Sbjct: 312 NDWYGHQAGDKCLQQVANLLQEHASEPHQLASRYGGEEFAILLSDQSIEQAMQIAESIQQ 371

Query: 202 -IIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +++ S  +  S  S ++T+S GI+      K P S ++++ADQALY+AK++GRN+V  +
Sbjct: 372 ALVKLSIPHSQSEVSDYVTVSVGISTVTATDKVPSSNLMHQADQALYLAKRNGRNQVAVY 431


>gi|316935058|ref|YP_004110040.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
 gi|315602772|gb|ADU45307.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
          Length = 284

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 106/193 (54%), Gaps = 15/193 (7%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YN 126
           +S T+S  + Y S  ++++L  +   + ++SR D L+GLLN   F  +  +         
Sbjct: 62  VSTTLSGAMAYRSARLMQQLTSTRAELVRMSRTDTLTGLLNRRGFDEAAATLLGRASFTG 121

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAA 184
           + +  +  D+D FK IND++GH +GD+V+A +   ++  F  P  M + R GGEEFA   
Sbjct: 122 QPVVALMCDLDRFKAINDHYGHTIGDRVLAEIGG-ILRDFAAPRGMLIARHGGEEFAGLI 180

Query: 185 LGSSEQEAAILANDL-RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
           +G S+++A   A +L R+       +   G  + +T+S G+A     + +S+++ RAD A
Sbjct: 181 VGVSDEQANDYALELCRRCATEVACD---GRRVAVTMSFGLATYGGGD-LSSLMRRADLA 236

Query: 244 LYVAKKSGRNRVV 256
           LY AK  GRN VV
Sbjct: 237 LYRAKDLGRNCVV 249


>gi|307299905|ref|ZP_07579690.1| diguanylate cyclase [Sinorhizobium meliloti BL225C]
 gi|306904794|gb|EFN35377.1| diguanylate cyclase [Sinorhizobium meliloti BL225C]
          Length = 402

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 99/195 (50%), Gaps = 17/195 (8%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129
           +++I+   +++L     G ++KE+ +   R S  S ID LSGL N   F S +      L
Sbjct: 196 AMLIVGTGVAML-----GVMVKEV-VDEARAS--SEIDALSGLCNRRGFSSRVAPLLRDL 247

Query: 130 S------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
           S      ++  DID FK +ND FGH  GD+VI   S  L  V       GR+GGEEFA  
Sbjct: 248 SDHDVGTLILADIDRFKLVNDTFGHHTGDEVIREFSHILADVVPHRAVAGRVGGEEFAIF 307

Query: 184 ALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
                  +A ++AN +R  +   +IN +  G  + +T S G++     E +   + RAD 
Sbjct: 308 LPRVGLADARVVANGIRSELAVKRINGLPEG--VAVTASFGVSAVAAGELLDAAMRRADN 365

Query: 243 ALYVAKKSGRNRVVC 257
           +LY AK  GRNRV C
Sbjct: 366 SLYAAKAGGRNRVEC 380


>gi|218548907|ref|YP_002382698.1| membrane-associated diguanylate cyclase [Escherichia fergusonii
           ATCC 35469]
 gi|218356448|emb|CAQ89071.1| putative membrane-associated diguanylate cyclase (GGDEF domain)
           [Escherichia fergusonii ATCC 35469]
 gi|324113268|gb|EGC07243.1| GGDEF domain-containing protein [Escherichia fergusonii B253]
          Length = 477

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 10/166 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +++Q +  D L+ + + S    +L        + ++++  DIDYFK IND+FGH  GDK
Sbjct: 302 KQVAQRADFDFLTQVYSRSGLYEALKKTELRGTQHITVMLLDIDYFKSINDSFGHECGDK 361

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V++  +  +  + G    V R+GGEEFA      + QE  +LA  +RK +     +    
Sbjct: 362 VLSVFAKHVQKIVGNQGLVARMGGEEFAVVVPSLNAQEGLLLAEKIRKAVALHPFDWQQ- 420

Query: 214 PSIHITISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254
            ++++T+S GI     +     E    ++  AD+ LY +KK GRNR
Sbjct: 421 KTLYLTVSIGIGSGATRFETLTEVFDKLMVEADECLYRSKKEGRNR 466


>gi|193065198|ref|ZP_03046271.1| MASE2 domain/diguanylate cyclase [Escherichia coli E22]
 gi|192927172|gb|EDV81793.1| MASE2 domain/diguanylate cyclase [Escherichia coli E22]
          Length = 371

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II +   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPII-VVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTP-AESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367


>gi|323700644|ref|ZP_08112556.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio sp. ND132]
 gi|323460576|gb|EGB16441.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           desulfuricans ND132]
          Length = 654

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 93/165 (56%), Gaps = 8/165 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +++  D L+G  N  AF       ++    +N  L+++  D+D+FK++ND+ GH +G
Sbjct: 489 RLERMATRDQLTGAYNRHAFFQRARHELARARRFNRPLAVLMCDLDHFKEVNDSHGHAIG 548

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+   + +            R+GGEEFAA  + +  + A  +A  +R +  +  ++  
Sbjct: 549 DEVLRTFALRCRADSRKTDVFARMGGEEFAALLVETDAERAVEVAERIRAMTASKPVSTE 608

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G  + +T+S G+A    ++ I+ ++ RAD+ALY AK+SGRN VV
Sbjct: 609 VG-DMAVTVSIGVAALNAEDSINELLKRADEALYKAKESGRNSVV 652


>gi|302559817|ref|ZP_07312159.1| GGDEF family protein [Streptomyces griseoflavus Tu4000]
 gi|302477435|gb|EFL40528.1| GGDEF family protein [Streptomyces griseoflavus Tu4000]
          Length = 209

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 81/156 (51%), Gaps = 14/156 (8%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           + +R D L+GL    AF         N    +V  D+D FKQ+ND  GH  GD ++A  +
Sbjct: 34  RTARRDPLTGLWTRDAFTRQASRLLRNPHAVVVLADVDRFKQVNDTHGHAAGDVLLAATA 93

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAAL---GSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +L    G    VGRLGG+EFAA  +   G++  + A+LA  L +  E +       P +
Sbjct: 94  SRLAHAVGRSGVVGRLGGDEFAAVLVDRDGTAADQLAVLARILARPTETA-------PEV 146

Query: 217 HITISAGIAERCH--KEPISTIIYRADQALYVAKKS 250
           H ++S G   R     E +S ++ RAD+A+Y AK++
Sbjct: 147 HTSVSLGWVRRADHPDEDLSALLKRADEAMYAAKRT 182


>gi|270263681|ref|ZP_06191950.1| diguanylate cyclase [Serratia odorifera 4Rx13]
 gi|270042565|gb|EFA15660.1| diguanylate cyclase [Serratia odorifera 4Rx13]
          Length = 482

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 9/178 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
            R+   +  D L+G+L  SA     G          E +S++  DID+FK IND  GH V
Sbjct: 299 RRLEHSANHDFLTGVLARSALTRKAGELLEHKYKSKEAVSLLLIDIDHFKLINDTHGHEV 358

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+ +A  +  +          GRLGGE+FA     +   +   LA  LR++++ + +  
Sbjct: 359 GDQALATFAHIVRRELRHDQLFGRLGGEDFAIMLPRALAAQGVALAEHLRQLVQKTDLYP 418

Query: 211 SSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
                + +TIS G+A     E   ++ ++  AD ALY AK  GRNRV  F+ +  N+ 
Sbjct: 419 GGKTPLKVTISVGVASLAMNEVKSLAQLMNMADIALYRAKSQGRNRVESFNAVSGNSV 476


>gi|119505319|ref|ZP_01627393.1| Response regulator [marine gamma proteobacterium HTCC2080]
 gi|119458774|gb|EAW39875.1| Response regulator [marine gamma proteobacterium HTCC2080]
          Length = 365

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 89/171 (52%), Gaps = 11/171 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL  +  ++  L+  D L+ L+N       L         Y  +LS++  DID+FK +ND
Sbjct: 193 ELKRANEKLEYLASTDPLTELVNRRRLDEVLEQEFERTSRYQGELSLILLDIDHFKAVND 252

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD+VIA + +    +       GR GGEEF   A  +S   A   A  LR  IE
Sbjct: 253 TRGHQVGDEVIAGVGNIAKQMSRKSDTAGRWGGEEFLIVAPQTSCDNAVAFAEKLRLSIE 312

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           N++   SSG  + ++ S G+A     E I  ++ RAD+ALY AK +GRNRV
Sbjct: 313 NTE--FSSG--VRVSASFGVASLETGETIQLVLKRADEALYRAKHNGRNRV 359


>gi|325497342|gb|EGC95201.1| membrane-associated diguanylate cyclase (GGDEF domain) [Escherichia
           fergusonii ECD227]
          Length = 477

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 10/166 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +++Q +  D L+ + + S    +L        + ++++  DIDYFK IND+FGH  GDK
Sbjct: 302 KQVAQRADFDFLTQVYSRSGLYEALKKTELRGTQHITVMLLDIDYFKSINDSFGHECGDK 361

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V++  +  +  + G    V R+GGEEFA      + QE  +LA  +RK +     +    
Sbjct: 362 VLSVFAKHVQKIVGNQGLVARMGGEEFAVVVPSLNAQEGLLLAEKIRKAVALHPFDWQQ- 420

Query: 214 PSIHITISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254
            ++++T+S GI     +     E    ++  AD+ LY +KK GRNR
Sbjct: 421 KTLYLTVSIGIGSGATRFETLTEVFDKLMVEADECLYRSKKEGRNR 466


>gi|313622803|gb|EFR93134.1| ggdef domain-containing protein [Listeria innocua FSL J1-023]
          Length = 357

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 104/199 (52%), Gaps = 21/199 (10%)

Query: 76  ITISLLLGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSAFISS----LGSYNEK 128
           ++I+L++G +S  ++K +  S   + +  Q S +D L+ L N   F       + + + +
Sbjct: 164 VSIALVIGAVSAGLMKNMIKSKQLFQKYEQDSTLDYLTRLSNVRQFDEKINHVMDAGSRQ 223

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF------GTPMFVGRLGGEEFAA 182
           ++++  DIDYFK IND +GH  GD ++     QL ++       G+  F  R GGEEF+ 
Sbjct: 224 VTLMLIDIDYFKNINDTYGHDAGDAIL----KQLAIILKRNTSDGSEAF--RNGGEEFSI 277

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-AD 241
             L    ++    A  +RK  E     I SG  + ITIS G++        S  +++ AD
Sbjct: 278 VLLDCPIEKGNFFAEQVRKETEEHDFMIPSGKLVKITISVGVSSSKDGANTSEGLFKSAD 337

Query: 242 QALYVAKKSGRNRVVCFSD 260
           +ALY AK +GRNR VC +D
Sbjct: 338 EALYKAKLTGRNR-VCIAD 355


>gi|82542876|ref|YP_406823.1| diguanylate cyclase AdrA [Shigella boydii Sb227]
 gi|157157429|ref|YP_001461563.1| diguanylate cyclase AdrA [Escherichia coli E24377A]
 gi|157159904|ref|YP_001457222.1| diguanylate cyclase AdrA [Escherichia coli HS]
 gi|218552948|ref|YP_002385861.1| diguanylate cyclase AdrA [Escherichia coli IAI1]
 gi|218693846|ref|YP_002401513.1| diguanylate cyclase AdrA [Escherichia coli 55989]
 gi|256020354|ref|ZP_05434219.1| diguanylate cyclase AdrA [Shigella sp. D9]
 gi|260842585|ref|YP_003220363.1| putative diguanylate cyclase [Escherichia coli O103:H2 str. 12009]
 gi|260853607|ref|YP_003227498.1| putative diguanylate cyclase [Escherichia coli O26:H11 str. 11368]
 gi|260866546|ref|YP_003232948.1| putative diguanylate cyclase [Escherichia coli O111:H- str. 11128]
 gi|293418452|ref|ZP_06660887.1| adrA [Escherichia coli B088]
 gi|300820379|ref|ZP_07100531.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
 gi|301330763|ref|ZP_07223361.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|309794893|ref|ZP_07689314.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
 gi|331666732|ref|ZP_08367606.1| protein AdrA [Escherichia coli TA271]
 gi|331676051|ref|ZP_08376763.1| protein AdrA [Escherichia coli H591]
 gi|332281529|ref|ZP_08393942.1| diguanylate cyclase AdrA [Shigella sp. D9]
 gi|81244287|gb|ABB64995.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|157065584|gb|ABV04839.1| MASE2 domain/diguanylate cyclase [Escherichia coli HS]
 gi|157079459|gb|ABV19167.1| MASE2 domain/diguanylate cyclase [Escherichia coli E24377A]
 gi|218350578|emb|CAU96268.1| putative diguanylate cyclase [Escherichia coli 55989]
 gi|218359716|emb|CAQ97257.1| putative diguanylate cyclase [Escherichia coli IAI1]
 gi|257752256|dbj|BAI23758.1| predicted diguanylate cyclase [Escherichia coli O26:H11 str. 11368]
 gi|257757732|dbj|BAI29229.1| predicted diguanylate cyclase [Escherichia coli O103:H2 str. 12009]
 gi|257762902|dbj|BAI34397.1| predicted diguanylate cyclase [Escherichia coli O111:H- str. 11128]
 gi|291324980|gb|EFE64395.1| adrA [Escherichia coli B088]
 gi|300527164|gb|EFK48233.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
 gi|300843276|gb|EFK71036.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|308121546|gb|EFO58808.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
 gi|320173800|gb|EFW48983.1| Protein YaiC [Shigella dysenteriae CDC 74-1112]
 gi|320187593|gb|EFW62276.1| Protein YaiC [Shigella flexneri CDC 796-83]
 gi|320201627|gb|EFW76203.1| Protein YaiC [Escherichia coli EC4100B]
 gi|323160509|gb|EFZ46457.1| diguanylate cyclase domain protein [Escherichia coli E128010]
 gi|323170464|gb|EFZ56114.1| diguanylate cyclase domain protein [Escherichia coli LT-68]
 gi|323178353|gb|EFZ63931.1| diguanylate cyclase domain protein [Escherichia coli 1180]
 gi|323184790|gb|EFZ70161.1| diguanylate cyclase domain protein [Escherichia coli 1357]
 gi|323945285|gb|EGB41341.1| diguanylate cyclase domain-containing protein [Escherichia coli
           H120]
 gi|331065956|gb|EGI37840.1| protein AdrA [Escherichia coli TA271]
 gi|331076109|gb|EGI47391.1| protein AdrA [Escherichia coli H591]
 gi|332103881|gb|EGJ07227.1| diguanylate cyclase AdrA [Shigella sp. D9]
          Length = 371

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II +   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPII-VVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTPA-ESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367


>gi|167623887|ref|YP_001674181.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167353909|gb|ABZ76522.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 350

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 88/161 (54%), Gaps = 10/161 (6%)

Query: 107 DCLSGLLNHSAF----ISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ + N  AF    IS + S+N      S++  DID+FK+ ND  GH VGDKV+A+++
Sbjct: 182 DQLTSVNNRRAFDKEVISHIDSFNHSNFDSSLLVVDIDHFKRFNDIHGHLVGDKVLAYVA 241

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG---PSI 216
             L        FV R GGEEF      ++++EA I+A +LR+ I    + I      P  
Sbjct: 242 QALKNGVKGDDFVARYGGEEFVILLPNTTQEEANIVAENLRQKIAERNLTIGKDKKLPLG 301

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +IT+S G+A     +   +   RAD+ALY AK SGRN VV 
Sbjct: 302 NITVSVGVASLKAADDKDSYFIRADEALYRAKSSGRNCVVS 342


>gi|163759691|ref|ZP_02166776.1| putative GGDEF sensory box protein [Hoeflea phototrophica DFL-43]
 gi|162283288|gb|EDQ33574.1| putative GGDEF sensory box protein [Hoeflea phototrophica DFL-43]
          Length = 356

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 98/182 (53%), Gaps = 16/182 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKLSIVFF-----DIDYFKQIN 143
           ++++ +  +   +++  D L+ L N  AF  +L + Y +K + ++      D+D+FK+ N
Sbjct: 163 MEQVKLELDEYKRIANTDPLTRLANRRAFDETLSNLYIDKRAAMYHALIVADVDHFKKFN 222

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKI 202
           D +GHPVGD+V+  ++  +       +F+ R GGEEFA    G+S QEA I +A  LR+ 
Sbjct: 223 DAYGHPVGDRVLGIVAAVMKSAVRKDVFLARTGGEEFAIILEGTS-QEATIGIAERLRRK 281

Query: 203 IE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IE     N +  +  GP   IT+S GI           +  +AD ALY AK +GRNR + 
Sbjct: 282 IETTPLKNQKTGLDYGP---ITLSLGICMASEASGAEELYNKADIALYAAKNTGRNRYMV 338

Query: 258 FS 259
           + 
Sbjct: 339 YK 340


>gi|163943097|ref|YP_001647981.1| diguanylate cyclase [Bacillus weihenstephanensis KBAB4]
 gi|163865294|gb|ABY46353.1| diguanylate cyclase [Bacillus weihenstephanensis KBAB4]
          Length = 351

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 112/230 (48%), Gaps = 18/230 (7%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI---SGSILKE 92
           SIF   + F  N++   I + P Y    IL +++ +V++ +   ++  YI   S S + +
Sbjct: 126 SIFTKWIWF--NVYSLSILILPLY----ILFKDIYVVVLYLICCIVAAYITFVSASYVLQ 179

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
               +  +   + ID L+ L N   F       I S    N+ L ++  DID+FK +ND 
Sbjct: 180 SNELFQTMKHYATIDALTNLGNVRQFDFEMNRHIDSKHMKNDSLCLLLIDIDHFKYVNDT 239

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GHP GD+V+  L   L+     P  V R GGEEFA             +   +R  +E 
Sbjct: 240 YGHPAGDEVLKQLGRILLENAPFPNLVFRKGGEEFALLLPKKRVAFGTRIGEQIRLAVEK 299

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               + +G  I IT+S G++E  +K+     I  AD ALY +K++GRN+V
Sbjct: 300 HSFQLLNGEKIKITVSVGLSE--YKKSPEQFIQSADDALYYSKRNGRNKV 347


>gi|283851585|ref|ZP_06368865.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
 gi|283573119|gb|EFC21099.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
          Length = 299

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 86/171 (50%), Gaps = 11/171 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           EL ++   + +LS  D L+GL N     + LG            LS+V  DID+FK +ND
Sbjct: 130 ELALTNRELVRLSTTDMLTGLANRQRVDALLGQGLCAMAEAGTPLSLVMLDIDHFKLVND 189

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+V+  ++ +L         VGR GGEEF     G    +A +LA  LR+ + 
Sbjct: 190 RHGHQRGDEVLRAVAGRLRGAVPPEFAVGRWGGEEFLVLCPGMRLADAYLLAETLRQAVS 249

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                 +SGP   +T S G+ E    E    ++ RADQALY AK  GR+RV
Sbjct: 250 APD---TSGPG-RLTCSFGVVEARSGEDGVGLLARADQALYAAKGLGRDRV 296


>gi|50122807|ref|YP_051974.1| hypothetical protein ECA3886 [Pectobacterium atrosepticum SCRI1043]
 gi|49613333|emb|CAG76784.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043]
          Length = 362

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 121/260 (46%), Gaps = 17/260 (6%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63
           +  D   I +C  K L S   +      +I F +   T   +  I +     TP     Y
Sbjct: 106 TFNDMAIIRICQNK-LPSIGEYAGKGTLTIIFPVLSPTDELLG-IRIRTTSETPSPSFFY 163

Query: 64  ILVENLS-LVIISITISLLLGYISGSILKELFISYN-RISQLSRIDCLSGLLNHSAFISS 121
            L    S +VI+SI   +LL  I GS+L  L   Y   +  ++R D L+G L   AF  +
Sbjct: 164 TLTSPGSAIVILSI---VLLSAILGSLLSLLAKKYLIELPIIARYDDLTGYLRRDAFFLA 220

Query: 122 LGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
                         + ++  DIDYFKQ+ND+FGH VGD  + F++D     F      GR
Sbjct: 221 ANKAFSIANLTKRPVCVILIDIDYFKQVNDSFGHSVGDDALKFVADTFKKSFRREDIFGR 280

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPI 233
           +GG+EFA     +   +A  + +  R+ +  +    ++G  I +T+S G+ E     E +
Sbjct: 281 IGGDEFAIVLPNTGLDDAYTIVDKARERVSETPCETTTG-KIRLTVSIGLVEYHATGEDL 339

Query: 234 STIIYRADQALYVAKKSGRN 253
             ++ RAD  LYVAKK+ RN
Sbjct: 340 IEVMKRADDNLYVAKKT-RN 358


>gi|50086486|ref|YP_047996.1| hypothetical protein ACIAD3531 [Acinetobacter sp. ADP1]
 gi|49532462|emb|CAG70174.1| conserved hypothetical protein; putative conserved domain GGDEF
           [Acinetobacter sp. ADP1]
          Length = 393

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 97/174 (55%), Gaps = 9/174 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGD 152
           + I +LS++D L+ LLN  +    L  +++       +++  D+D+FKQIND +GH VGD
Sbjct: 221 DEIKRLSQLDFLTNLLNRRSIHQVLDHFHQTRAEKNYAVILLDLDHFKQINDQYGHHVGD 280

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  +S+ L         +GR GGEEF      +S   A  +A   R  I+  Q+NI++
Sbjct: 281 QVLIAISECLTQHVHPLNNIGRFGGEEFIILIPETSLSAAREIAECCRLAIQ--QLNIAT 338

Query: 213 GP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD-IENN 264
              +I ++ S G+A    +   S I+ +ADQALY AK  GRN+V  F + I+ N
Sbjct: 339 TQDNIQLSASFGVAISSLQYEASQILTQADQALYFAKACGRNQVRTFPEYIQQN 392


>gi|213968072|ref|ZP_03396217.1| CHASE domain/sensory box-containing nucleotide cyclase [Pseudomonas
           syringae pv. tomato T1]
 gi|213927052|gb|EEB60602.1| CHASE domain/sensory box-containing nucleotide cyclase [Pseudomonas
           syringae pv. tomato T1]
          Length = 795

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 94/184 (51%), Gaps = 18/184 (9%)

Query: 87  GSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
           GS+L   F+S      R+ +    LS  D L+G  N   F       +  +  +   LSI
Sbjct: 610 GSVLWHGFVSDITDLKRVEEELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSI 669

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK+IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +
Sbjct: 670 IMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVVCPGTRGGQ 729

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A  LA  LR+ + N  I    G    +T S GIA     E I T++ RAD  +Y AK++G
Sbjct: 730 AYQLALSLREGLRNQVIE---GVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQAG 786

Query: 252 RNRV 255
           R+RV
Sbjct: 787 RDRV 790


>gi|307152144|ref|YP_003887528.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
 gi|306982372|gb|ADN14253.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
          Length = 360

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 96/177 (54%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +Y ++  L  ID L+ + N  A              Y+   SI+  D+DYFK IND
Sbjct: 178 ELKAAYAQLELLVNIDPLTNVANRRALFKFGEQELYRAQRYHCSFSILLIDLDYFKHIND 237

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           ++GH +GD V+  + + +         +GR GGEEF      +  +EA I+A  +RK I 
Sbjct: 238 SYGHAMGDTVLKIVCNAINNSIRQIDLLGRFGGEEFVVILPKTKLKEAIIVAERIRKTI- 296

Query: 205 NSQINISSG-PSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
            S++++  G  ++ IT S G+A    K+  +  +++RAD+ LY+AK+ GRN+VV + 
Sbjct: 297 -SELSLLVGQKTLKITASIGLATYNQKDATLDEVLHRADKGLYLAKERGRNQVVIYD 352


>gi|196045510|ref|ZP_03112741.1| GGDEF domain protein [Bacillus cereus 03BB108]
 gi|229187644|ref|ZP_04314781.1| GGDEF domain protein [Bacillus cereus BGSC 6E1]
 gi|196023717|gb|EDX62393.1| GGDEF domain protein [Bacillus cereus 03BB108]
 gi|228595798|gb|EEK53481.1| GGDEF domain protein [Bacillus cereus BGSC 6E1]
          Length = 351

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 113/233 (48%), Gaps = 24/233 (10%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91
           S+F   + F  N++  +I   P +    IL +++S+V + +  S +  YI+      +L+
Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLF----ILFKDMSIVALYLVCSSVAAYITFISANYVLQ 179

Query: 92  --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
             ELF    ++ Q + ID L+GL N   F       I +    N  L ++  DID+FK +
Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSV 236

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GHP GD+V+  +   L  V   P    R GGEEFA             +   +R  
Sbjct: 237 NDTYGHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAA 296

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E     +  G  I IT+S GI+   +++     I  AD ALY +K++GRN+V
Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|115524966|ref|YP_781877.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
 gi|115518913|gb|ABJ06897.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
          Length = 355

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 9/165 (5%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F  ++        +  E L+++  DID+FK  ND +GH  GD+V+  + 
Sbjct: 181 DPLTGLGNRKHFDRAVEDAVRRAYANGEPLALLMIDIDHFKIFNDTYGHLTGDQVLRLVG 240

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--H 217
             L         + R GGEEFA     ++ + A  +A ++R+ +   ++   S   I   
Sbjct: 241 QALKQTITGQDIMARYGGEEFAVVLPNTTLRHAIGVAENIRRTVTAKELKKKSTGEILGR 300

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +T+S G++E    E + ++I RAD  LY AK+ GRNRVVC +D E
Sbjct: 301 VTVSIGVSELKLDEDMDSMIERADSCLYTAKRIGRNRVVCETDRE 345


>gi|307721799|ref|YP_003892939.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
 gi|306979892|gb|ADN09927.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
          Length = 338

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 78/132 (59%), Gaps = 6/132 (4%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           YN   S+V FDID+FK++NDN+GH +GDKV+   +  +  +        R+GGEEF    
Sbjct: 211 YNHPFSLVIFDIDFFKKVNDNYGHDMGDKVLVEYTKYISSILRDTDIFCRIGGEEFIVIL 270

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +++ +A +LA  LR+ +EN +        + IT+S G+A     +  ++I  R D AL
Sbjct: 271 PNTTKDKAYLLAQKLRESVENYK------EILPITMSFGVAGYEKGDDDTSIYKRVDVAL 324

Query: 245 YVAKKSGRNRVV 256
           Y AK++GRN+VV
Sbjct: 325 YKAKETGRNKVV 336


>gi|300818294|ref|ZP_07098505.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
 gi|300529185|gb|EFK50247.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
          Length = 371

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II +   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPII-VVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTPA-ESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367


>gi|261251227|ref|ZP_05943801.1| sensory box/GGDEF family protein [Vibrio orientalis CIP 102891]
 gi|260938100|gb|EEX94088.1| sensory box/GGDEF family protein [Vibrio orientalis CIP 102891]
          Length = 633

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 92/177 (51%), Gaps = 18/177 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIV-FFDIDYFKQINDNFGH 148
           NR+  LS  D ++ L N   F S + ++        N+ +S++   DID+FK++ND +GH
Sbjct: 464 NRLRDLSEKDSMTSLWNRRKFDSEMQAHSARTKRYTNQAVSVLALIDIDHFKRVNDRYGH 523

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD VI  ++  L         V R+GGEEFA     +  +EA ++ N +R       +
Sbjct: 524 DKGDAVIRQVAKSLEKQLRETDLVARIGGEEFALILPHTDLREAEVVLNRIR-------V 576

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            +S    ++IT+SAG+ E C  +       RAD ALY +K  GRN+V   S  EN++
Sbjct: 577 AVSLESELNITVSAGLTEICSHQ--DETYKRADIALYESKSLGRNKVSILSMTENDS 631


>gi|222098886|ref|YP_002532944.1| hypothetical protein BCQ_5255 [Bacillus cereus Q1]
 gi|221242945|gb|ACM15655.1| conserved hypothetical protein [Bacillus cereus Q1]
          Length = 351

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 114/233 (48%), Gaps = 24/233 (10%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91
           SIFI  + F  N++   I + P      +L +++S+V + +  S +  YI+      +L+
Sbjct: 126 SIFIRWIWF--NVYSLSILIVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQ 179

Query: 92  --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
             ELF    ++ Q + ID L+GL N   F       I +    N+ L ++  DID+FK +
Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNDSLCLLLIDIDHFKSV 236

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GHP GD+V+  +   L  V   P    R GGEEFA             +   +R  
Sbjct: 237 NDTYGHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAA 296

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E     +  G  I IT+S GI+   +++     I  AD ALY +K++GRN+V
Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|260550179|ref|ZP_05824392.1| GGDEF family protein [Acinetobacter sp. RUH2624]
 gi|260406707|gb|EEX00187.1| GGDEF family protein [Acinetobacter sp. RUH2624]
          Length = 397

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 132/282 (46%), Gaps = 36/282 (12%)

Query: 13  LCHEKNL-ESFSPHTFMIYF------------SIFFSIFI-ATVIFIANIFLFYIGLTPF 58
           LCH+  L  S SP T + Y              I +S FI AT+I     +L   G+ P+
Sbjct: 117 LCHDGYLIGSISPATMVGYVGTIGVGLVLFERKIVYSAFIPATIILAVCTYLSMNGVIPY 176

Query: 59  YGLEYILVENLSLVIISITISLLLG---------YISGSILKELFISYNR-----ISQLS 104
             L      N + +  + T    LG          ++  IL E+ ++  R     I +LS
Sbjct: 177 APLF-----NFTAIRHAQTNPFWLGSMLFFIMPILVACFILFEILLTQWRQRETYIQRLS 231

Query: 105 RIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +ID L+ +LN  +  + L + +E+    ++V  DID+FK+IND +GH  GD+V+  ++  
Sbjct: 232 QIDPLTNVLNRRSLNAHLETLHEQQFDYALVLLDIDHFKKINDVYGHHQGDQVLIKIAQC 291

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L     T   +GR GGEEF      +   +A  +A   R  ++   I  +    IH++ S
Sbjct: 292 LSENLRTEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRLALQGLSIFNNQNIQIHVSAS 351

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            GI+          +I +AD+ALY  K SGRN+V  F  I +
Sbjct: 352 FGISSSAFANDPYIVIRQADEALYAVKASGRNQVRTFQQIPH 393


>gi|191166731|ref|ZP_03028558.1| MASE2 domain/diguanylate cyclase [Escherichia coli B7A]
 gi|194428836|ref|ZP_03061371.1| MASE2 domain/diguanylate cyclase [Escherichia coli B171]
 gi|190903242|gb|EDV62964.1| MASE2 domain/diguanylate cyclase [Escherichia coli B7A]
 gi|194413139|gb|EDX29426.1| MASE2 domain/diguanylate cyclase [Escherichia coli B171]
          Length = 366

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II +   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 171 LSLPII-VVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 229

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 230 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 289

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 290 VIMSGTP-AESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 340

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 341 REWLKSADLALYKAKKAGRNRT 362


>gi|300940106|ref|ZP_07154714.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
 gi|300455043|gb|EFK18536.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
          Length = 472

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 84/157 (53%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E  Q       ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVE-LQPFTRQQKTLYLTVSI 424

Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254
           G+   C       +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|66045350|ref|YP_235191.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63256057|gb|AAY37153.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 796

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 93/184 (50%), Gaps = 18/184 (9%)

Query: 87  GSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
           GS+L   F+S      R+ Q    LS  D L+G  N   F       +  +  +   LSI
Sbjct: 611 GSVLWHGFVSDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSI 670

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK+IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +
Sbjct: 671 IMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRGAQ 730

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A  LA  LR+ + N  I    G    +T S GIA     E I  ++ RAD  +Y AK++G
Sbjct: 731 AYQLALSLREELRNQAIE---GVDQVVTGSFGIASWREGEGIDEMLLRADSGVYAAKQAG 787

Query: 252 RNRV 255
           R+RV
Sbjct: 788 RDRV 791


>gi|283856362|ref|YP_162654.2| diguanylate cyclase with beta propeller sensor [Zymomonas mobilis
            subsp. mobilis ZM4]
 gi|283775361|gb|AAV89543.2| diguanylate cyclase with beta propeller sensor [Zymomonas mobilis
            subsp. mobilis ZM4]
          Length = 1008

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 8/164 (4%)

Query: 99   RISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            R+ +L+  D L+GLLN  AF        +      ++ S+   DID+FK+INDN GH  G
Sbjct: 844  RLKELANTDELTGLLNRRAFTEMFEKNCAQFSKTKDQFSVFILDIDFFKKINDNEGHLAG 903

Query: 152  DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            D VI +++ ++        F  R GGEEF      +  +    +A+ +   I    +   
Sbjct: 904  DAVIQYIAQKITENIRQQDFAARYGGEEFVIMLPNADMETTCQVASRIGNAISEKPVPY- 962

Query: 212  SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             G  I +T+S G+A     +  ++++ RAD+ LY+AK  GRNRV
Sbjct: 963  QGREIPVTVSIGVAVMKENDDANSLLERADERLYMAKNQGRNRV 1006


>gi|114569873|ref|YP_756553.1| diguanylate cyclase [Maricaulis maris MCS10]
 gi|114340335|gb|ABI65615.1| diguanylate cyclase [Maricaulis maris MCS10]
          Length = 350

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 9/174 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +L  +  ++ + +  D L+G+ N   F  SL        +  + LS++  DID+FK+ ND
Sbjct: 165 QLRTNLEKVREEAMTDALTGIANRKRFDESLRRARRDADTKKQPLSLILCDIDFFKRFND 224

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD++I F++  L    G    V R GGEEF      ++   A  +A  +RK +E
Sbjct: 225 TWGHQTGDQIIRFVAGCLTRHAGENHLVARYGGEEFGIVMPNTAPNVAEQVAEKIRKTVE 284

Query: 205 NSQ-INISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + + +  S+   + +IT+S GIA     E I  +I R+D  LY +K  GRNR  
Sbjct: 285 SKKLLRKSTNEDLGNITVSLGIATYHEGESIEELIERSDTNLYRSKTEGRNRTT 338


>gi|186685297|ref|YP_001868493.1| diguanylate cyclase with PAS/PAC sensor [Nostoc punctiforme PCC
           73102]
 gi|186467749|gb|ACC83550.1| diguanylate cyclase with PAS/PAC sensor [Nostoc punctiforme PCC
           73102]
          Length = 536

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 87/167 (52%), Gaps = 14/167 (8%)

Query: 107 DCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+GL N   F        I ++   +++++++  DIDYFK IND FGH  GD+VI   
Sbjct: 375 DGLTGLFNRRYFDEIFPKELIRAMRD-SDRVALIIMDIDYFKNINDTFGHQAGDRVIQVF 433

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +D L     +   V R GGEEF  A  G ++++A   A  +R   + +Q+  S G  IH 
Sbjct: 434 ADLLRNYSDSQNIVCRYGGEEFVLALPGLTQEKAYQHAEQIRLSFQAAQLE-SGGKQIHT 492

Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           T+S G+     H +    ++   DQALY AK  GRN   C   +++N
Sbjct: 493 TVSGGVGVFPDHGKTTDELLQVVDQALYAAKLHGRN---CIKRVQSN 536


>gi|333008575|gb|EGK28043.1| diguanylate cyclase domain protein [Shigella flexneri VA-6]
          Length = 366

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II +   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 171 LSLPII-VVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 229

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 230 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 289

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 290 VIMSGTP-AESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 340

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 341 REWLKSADLALYKAKKAGRNRT 362


>gi|238751415|ref|ZP_04612908.1| hypothetical protein yrohd0001_16030 [Yersinia rohdei ATCC 43380]
 gi|238710473|gb|EEQ02698.1| hypothetical protein yrohd0001_16030 [Yersinia rohdei ATCC 43380]
          Length = 519

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 84/156 (53%), Gaps = 9/156 (5%)

Query: 104 SRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           ++ D ++GL N       + SL    E  +++  DID FK IND++GH VGD+VI  L+ 
Sbjct: 366 AQTDPMTGLYNRRGLATRLESLSQLGEDFAVIALDIDLFKSINDSYGHDVGDEVIKQLAI 425

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-IT 219
           Q+         + R GGEEF     G+    A  +AN LR  +E  +I     P IH IT
Sbjct: 426 QIRDSSRDSDILCRSGGEEFLMLLPGTRPNVAIQVANRLRNKVETMEI-----PGIHPIT 480

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           IS G+A    +      + RAD+ALY AK++GRNRV
Sbjct: 481 ISLGVAYWNGESMPEEALKRADEALYRAKENGRNRV 516


>gi|170683666|ref|YP_001743704.1| diguanylate cyclase [Escherichia coli SMS-3-5]
 gi|170521384|gb|ACB19562.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           SMS-3-5]
          Length = 472

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254
           G+   C       +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|113968612|ref|YP_732405.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113883296|gb|ABI37348.1| diguanylate cyclase [Shewanella sp. MR-4]
          Length = 485

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 16/198 (8%)

Query: 68  NLSL-VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN 126
           NL L ++++I I L+     G   ++L I       ++  D L+G  N   F        
Sbjct: 294 NLGLSLLVTIGILLISNMTLGRYQRKLEI-------MASTDKLTGAANRQVFEEYFHQAL 346

Query: 127 EK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
           +K       +SI+  DID+FK++ND++GH VGD V+  +++ L         + R GGEE
Sbjct: 347 DKAKLSRTPISILLIDIDHFKKVNDSYGHSVGDLVLKTVTNLLRSQLKEQDILCRWGGEE 406

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F           AA LA   R +I   ++ ++ G  I IT+S G+AE    EP   +I R
Sbjct: 407 FIVLLPEMDLSHAAELAKHFRDLIFQRELKVN-GVHIAITVSIGVAEYQKLEPAEDLIKR 465

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK+SGRN+VV 
Sbjct: 466 ADLALYQAKESGRNQVVL 483


>gi|114564780|ref|YP_752294.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114336073|gb|ABI73455.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 388

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 105/210 (50%), Gaps = 16/210 (7%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-- 120
           Y +V   +L    + +S+ + Y+  S L E       +  L+  D L+   N   F S  
Sbjct: 187 YAIVNFTALPAAYVGMSVFVIYMLASDLAE------EMKLLAMTDPLTDCFNRRGFYSHA 240

Query: 121 -----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                 L    +   ++++DID FK IND FGH  GD+V+  ++  +         +GR+
Sbjct: 241 KQKLLELQKQPQHACLIYWDIDKFKAINDQFGHAGGDQVLISITQLIKQHIKKDDLIGRM 300

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIS 234
           GGEEF      S+ QEA  +A  LR +I  + I +  G  I +T S G+ E  +++ PI 
Sbjct: 301 GGEEFVILIERSNYQEAINVAERLRAMINQTPI-VYCGQQISVTASFGVVELSNQDIPIE 359

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             I  AD ALY AK SGRN+VV FS++ + 
Sbjct: 360 QAIDLADSALYQAKSSGRNKVV-FSELSSR 388


>gi|212635204|ref|YP_002311729.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212556688|gb|ACJ29142.1| GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 347

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 90/164 (54%), Gaps = 10/164 (6%)

Query: 107 DCLSGLLNHSAF----ISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N  AF    IS + ++N+K    S++  DID+FK+ ND  GH +GDKV+ +++
Sbjct: 182 DQLTSLNNRRAFDEEVISHIDTFNQKEFESSLLVVDIDHFKKFNDVHGHLIGDKVLTYVA 241

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG---PSI 216
             L        FV R GGEEF      +   EA I+AN+LR+ I    + I      P  
Sbjct: 242 QALKQSVKGDDFVARYGGEEFVILLPNTGIDEAKIVANNLRQKIAKRNLTIGKEKKLPLG 301

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +IT+S G A   +++   +   RAD+ALY AK +GRN V+  S+
Sbjct: 302 NITVSVGCASLKNEDSKDSYFIRADEALYRAKSAGRNCVMVESE 345


>gi|254457441|ref|ZP_05070869.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207086233|gb|EDZ63517.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 369

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 11/190 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
           +I +++  +L GY+  S  K +F+    + +++  D L+GL N +         +     
Sbjct: 179 MIAALSFGILSGYLLESSQKTIFLKKEELEKIAITDKLTGLYNRTMSDKVVKDELEKSKR 238

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           Y     ++  DIDYFK +ND +GH VGD V+   ++ L     +   + R GGEEF   +
Sbjct: 239 YGHSFGLMMLDIDYFKNVNDTYGHLVGDDVLVEFTNILKKYTRSTDTLIRWGGEEFIIIS 298

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
           L   +     LA  +RK +E              T+S G+      + I++I+ RADQAL
Sbjct: 299 LEVDKDGLMTLAEHIRKKVEGHNFKTVGTK----TVSIGVTLNKDNDDINSIVQRADQAL 354

Query: 245 YVAKKSGRNR 254
           Y +K SGRNR
Sbjct: 355 YKSKNSGRNR 364


>gi|190573427|ref|YP_001971272.1| putative GGDEF family signalling protein [Stenotrophomonas
           maltophilia K279a]
 gi|190011349|emb|CAQ44964.1| putative GGDEF family signalling protein [Stenotrophomonas
           maltophilia K279a]
          Length = 481

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 10/172 (5%)

Query: 97  YNRISQL-SRIDCLSGLLNHSAFISS-------LGSYNE-KLSIVFFDIDYFKQINDNFG 147
           + RI +L +  D L+ LLN   F+ +       L + N    S++  D+D+FK IND  G
Sbjct: 297 FERIGELDAGSDALTNLLNRR-FLPTVLRREIELATRNRTPFSLLLLDLDHFKAINDGHG 355

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+ +  ++  L  +     ++ R GGEEF    + +SE +A ++A  LR+ I  S 
Sbjct: 356 HDAGDRALQHVAGLLGQLTRGSDYLFRYGGEEFVVVLVAASESQATVIAESLRRQIAQSP 415

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +++G  + +T S G+A          ++ RAD A+Y AK+SGRNRVV  S
Sbjct: 416 VALANGQVLELTASIGVAGHDGHPDYERLMARADAAMYEAKRSGRNRVVVAS 467


>gi|300989677|ref|ZP_07178950.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1]
 gi|300407293|gb|EFJ90831.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1]
          Length = 472

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254
           G+   C       +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|260778798|ref|ZP_05887690.1| GGDEF domain protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604962|gb|EEX31257.1| GGDEF domain protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 347

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 124/233 (53%), Gaps = 26/233 (11%)

Query: 38  FIATVI-FIANIFL-----FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK 91
           F+AT++ FI+ +FL     F  G+  ++ L    + N +L  +S+       +++  IL+
Sbjct: 117 FVATMMGFISQLFLVVDKSFVDGVVSYFEL----IVNFALAYLSV-------WLASHILE 165

Query: 92  -ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDN 145
            +   S   + QL+  D L+ + N  A I +   Y ++     LS++  D+DYFKQ+ND 
Sbjct: 166 VKRKTSEASLGQLASRDALTSVYNRHALIHNFDRYRQESETLPLSLLVLDLDYFKQVNDE 225

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH +GDKV+   +  L+        V R+GGEEF  A   ++ Q A I A  +R  IE 
Sbjct: 226 FGHDIGDKVLV-QTAALIDGLSDEHLVYRIGGEEFCIALHNTNIQHAMIKAEQIRMAIER 284

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV-VC 257
            + N +  P I +T S GI +      + +++  AD+ LY AKK+GRN+V VC
Sbjct: 285 YRFNSNEQP-ISLTASIGIYQCDLYNDLESVLKEADKELYKAKKNGRNQVMVC 336


>gi|297568907|ref|YP_003690251.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924822|gb|ADH85632.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2]
          Length = 396

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 99/217 (45%), Gaps = 18/217 (8%)

Query: 55  LTPFYGLE-------YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107
           L P Y  E       Y L  +L+L    +     + Y  G  +    + Y  + +LS  D
Sbjct: 174 LLPLYAKERVVGVFFYYLPPDLTLTKAELETFQTVSYQLGLAIDNARL-YETVRRLSIYD 232

Query: 108 CLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+GL NH  F       +S        LS++  DID+FK++ND +GH  GD V+  LS 
Sbjct: 233 PLTGLFNHGQFYNLLAEELSRHQRTGRPLSLLMLDIDHFKKVNDTYGHRAGDAVLQQLSG 292

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            L         V R GGEE A     +  + A   A  LR+ +E           I +T+
Sbjct: 293 LLKKQARAIDRVCRYGGEELALILPETDREAARQTAERLRRHVEKCCFATCGQQEIGVTV 352

Query: 221 SAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
           S G A  C    IS  T++  AD+ALY AK++GRNRV
Sbjct: 353 SIGAAT-CPDAAISAETLVNAADRALYAAKRAGRNRV 388


>gi|114799330|ref|YP_761053.1| GGDEF/GAF domain-containing protein [Hyphomonas neptunium ATCC
           15444]
 gi|114739504|gb|ABI77629.1| GGDEF/GAF domain protein [Hyphomonas neptunium ATCC 15444]
          Length = 369

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 89/161 (55%), Gaps = 9/161 (5%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+  LNH AF       +     ++  +S++ FDID+FK++ND  GH  GD+VI
Sbjct: 184 LAVTDPLTKALNHRAFFRFAEREVQRAQRHHHPVSVLMFDIDHFKKVNDIHGHAAGDEVI 243

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             LS  +         +GRLGGEEF      +S + A  LAN LR+ +++ +   S G +
Sbjct: 244 IRLSRLVTECVREADLLGRLGGEEFGLILPETSLEAAVTLANRLREAVKDLRFKSSEG-T 302

Query: 216 IHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             +TIS G+++    E  I   + RAD+ALY AK+ GR+R 
Sbjct: 303 FGVTISLGVSQPGDTETDIVPALDRADKALYRAKRFGRDRA 343


>gi|148654756|ref|YP_001274961.1| PAS/PAC sensor-containing diguanylate cyclase [Roseiflexus sp.
           RS-1]
 gi|148566866|gb|ABQ89011.1| diguanylate cyclase with PAS/PAC sensor [Roseiflexus sp. RS-1]
          Length = 305

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 86/171 (50%), Gaps = 10/171 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISS--------LGSYNEKLSIVFFDIDYFKQINDNFGHP 149
            R+  L+ +D L+G+ N   FI S        L  Y     ++  DID+FK +ND FGH 
Sbjct: 132 ERLRALALLDPLTGIGNRR-FIESNTHSRLEELRRYGWTFGVILIDIDHFKAVNDRFGHL 190

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD V+  ++  L         VGR GGEEF   A   S      LA  LR  IE S + 
Sbjct: 191 VGDDVLKMVARTLAHNIRAFDVVGRWGGEEFVVIAQNVSIATLESLAERLRVFIEQSSLP 250

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++    +H+T+S G       +  ++I+ RADQ LYV+K+ GRNRV    D
Sbjct: 251 VAD-KVVHVTVSLGATLARRTDTPASILGRADQMLYVSKQRGRNRVSVEED 300


>gi|16760930|ref|NP_456547.1| hypothetical protein STY2194 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29141378|ref|NP_804720.1| hypothetical protein t0891 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213053044|ref|ZP_03345922.1| hypothetical protein Salmoneentericaenterica_09073 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213424988|ref|ZP_03357738.1| hypothetical protein SentesTyphi_04385 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213650737|ref|ZP_03380790.1| hypothetical protein SentesTy_28024 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|20140617|sp|Q8Z5R0|YEDQ_SALTI RecName: Full=Cellulose synthesis regulatory protein
 gi|25512058|pir||AC0754 probable membrane protein STY2194 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503227|emb|CAD05734.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137005|gb|AAO68569.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 567

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 100/206 (48%), Gaps = 20/206 (9%)

Query: 74  ISITISLLLGYISGSIL----------KELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           ISI ++LL G  +  +L          K +F+  N     +  D L+ L N  A      
Sbjct: 355 ISIALTLLWGLFTAMLLISWGVIRHMVKNMFVLQNSPQWQAWHDPLTRLYNRGALFEKAS 414

Query: 124 S----YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                Y E     S++  D+DYFK +ND FGH  GD+V++  +  +          GR+G
Sbjct: 415 RLAKRYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVG 474

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPIS 234
           GEEF     G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE        
Sbjct: 475 GEEFCIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFE 534

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSD 260
            +   AD+ LY AK+SGRNR +C SD
Sbjct: 535 QLQSLADKRLYYAKQSGRNR-ICASD 559


>gi|261856032|ref|YP_003263315.1| diguanylate cyclase [Halothiobacillus neapolitanus c2]
 gi|261836501|gb|ACX96268.1| diguanylate cyclase [Halothiobacillus neapolitanus c2]
          Length = 247

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 21/184 (11%)

Query: 86  SGSILKELFISYNRISQLS-------RIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDI 136
           S    +EL  +  R+ +L+       R D L+ LLN +  I+         K +++  DI
Sbjct: 61  SDRTERELNNANQRLRELTEALTFQNRHDGLTRLLNRTTLINEAEQLLKTTKSALIMIDI 120

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FKQIND +GHP GD+V+  L+D L  +   P   GRLGGEEFA     +  +E   LA
Sbjct: 121 DHFKQINDRYGHPTGDRVLVGLADTLRSIIQPPALCGRLGGEEFAIVLPTNQLEEVISLA 180

Query: 197 NDLRKIIEN----SQINISSGPSIHITIS-AGIAERCHKEPISTIIYRADQALYVAKKSG 251
             + + I N    S++ +    S+ IT++  G+          T+    D ALY AK  G
Sbjct: 181 EKISEEIRNLRCESELGLRMTASLSITLARPGVN-------FDTLYLCGDDALYRAKHDG 233

Query: 252 RNRV 255
           RNR+
Sbjct: 234 RNRI 237


>gi|110834979|ref|YP_693838.1| GGDEF domain-containing protein [Alcanivorax borkumensis SK2]
 gi|110648090|emb|CAL17566.1| GGDEF domain protein [Alcanivorax borkumensis SK2]
          Length = 409

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 124/258 (48%), Gaps = 36/258 (13%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG-YISGSILKE 92
           F+    ++ I IA   +F + L P  G        L LV ++ T + L G Y+   +L++
Sbjct: 149 FYVALGSSAIMIA-CMIFSLQLNP--GRYPFEPTTLVLVSLAFTCTGLFGQYVYERLLRQ 205

Query: 93  LFISYNRISQ--------------LSRIDCLSGLLNHSAFISSLG-----------SYNE 127
            F+S + + Q               + +D ++G +N     S L               E
Sbjct: 206 YFLSEHVLFQHRNELHSANLVLENQATVDGMTGCINRRGMESRLNHLYHQLKQKTPDAPE 265

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD-QLVVVFGTPMFVGRLGGEEFAAAALG 186
           +++++ FDID+FKQ ND +GHP GD+ +  ++   L +V     FV R GGEEF      
Sbjct: 266 RITLILFDIDFFKQYNDTYGHPAGDECLKKVASVPLGMVQSDTDFVARYGGEEFVITLAD 325

Query: 187 SSEQEAAILANDLRKIIENSQINIS-SGPSIH--ITISAGIA-ERCHKEPISTIIYRADQ 242
           SS  +A + A  +R  +E  Q+ I  SG  I   +TIS G+A    + E    ++  AD+
Sbjct: 326 SSFNDALVFAERMRNRVE--QLGIPHSGSRISQVVTISVGVACSDSNAENGGQLLKMADE 383

Query: 243 ALYVAKKSGRNRVVCFSD 260
           ALY AK SGRNRV   S+
Sbjct: 384 ALYQAKGSGRNRVALMSN 401


>gi|324116869|gb|EGC10782.1| diguanylate cyclase domain-containing protein [Escherichia coli
           E1167]
          Length = 366

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II +   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 171 LSLPII-VVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 229

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 230 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 289

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 290 VIMSGTPA-ESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 340

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 341 REWLKSADLALYKAKKAGRNRT 362


>gi|301385835|ref|ZP_07234253.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. tomato Max13]
 gi|302061854|ref|ZP_07253395.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. tomato K40]
 gi|302135185|ref|ZP_07261175.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 786

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 94/184 (51%), Gaps = 18/184 (9%)

Query: 87  GSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
           GS+L   F+S      R+ +    LS  D L+G  N   F       +  +  +   LSI
Sbjct: 601 GSVLWHGFVSDITDLKRVEEELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSI 660

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK+IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +
Sbjct: 661 IMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVVCPGTRGGQ 720

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A  LA  LR+ + N  I    G    +T S GIA     E I T++ RAD  +Y AK++G
Sbjct: 721 AYQLALSLREGLRNQVIE---GVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQAG 777

Query: 252 RNRV 255
           R+RV
Sbjct: 778 RDRV 781


>gi|163759598|ref|ZP_02166683.1| putative sensory box/GGDEF family protein [Hoeflea phototrophica
           DFL-43]
 gi|162283195|gb|EDQ33481.1| putative sensory box/GGDEF family protein [Hoeflea phototrophica
           DFL-43]
          Length = 340

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 96/186 (51%), Gaps = 12/186 (6%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-ISSLGSYNE-----KLSIVFFDI 136
            ++   I+ EL    N   Q++  D L+GL N  AF I   G YNE     + +++  DI
Sbjct: 125 AHVVTRIINEL----NTYKQIANTDMLTGLANRRAFDIQLEGIYNEPGKLPQTALIICDI 180

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK  ND +GH +GD V+  +++ +           R+GGEEFA     +S Q+  ++A
Sbjct: 181 DHFKSFNDTYGHAIGDTVLKTVAETIRESLPANATPARIGGEEFAIIVEKASLQQVQLIA 240

Query: 197 NDLRKIIENSQ-INISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
              R+ IE+   I+  SG     +TIS GI        +S +  +AD ALY +KKSGRNR
Sbjct: 241 ETARRAIEDRMFIDEESGTDCGKVTISMGICLADVAAKMSELYQKADLALYASKKSGRNR 300

Query: 255 VVCFSD 260
              F +
Sbjct: 301 CTVFDE 306


>gi|289829477|ref|ZP_06547089.1| hypothetical protein Salmonellentericaenterica_23168 [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
          Length = 567

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 100/206 (48%), Gaps = 20/206 (9%)

Query: 74  ISITISLLLGYISGSIL----------KELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           ISI ++LL G  +  +L          K +F+  N     +  D L+ L N  A      
Sbjct: 355 ISIALTLLWGLFTAMLLISWGVIRHMVKNMFVLQNSPQWQAWHDPLTRLYNRGALFEKAS 414

Query: 124 S----YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                Y E     S++  D+DYFK +ND FGH  GD+V++  +  +          GR+G
Sbjct: 415 RLAKRYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVG 474

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPIS 234
           GEEF     G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE        
Sbjct: 475 GEEFCIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFE 534

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSD 260
            +   AD+ LY AK+SGRNR +C SD
Sbjct: 535 QLQSLADKRLYYAKQSGRNR-ICASD 559


>gi|86158001|ref|YP_464786.1| diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774512|gb|ABC81349.1| diguanylate cyclase with GAF sensor [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 764

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 13/176 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           +++  +L+  D L+GL NH  F   L +       Y ++ S++  DID+FK +ND +GHP
Sbjct: 585 FDQTERLATTDGLTGLTNHRTFQERLDAHLGQAQRYGKRTSLLLCDIDHFKSVNDTYGHP 644

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+V+  ++  L         V R GGEEFA     +    A ++A  +R+ +      
Sbjct: 645 VGDQVLRGVARTLARAARGTDVVARYGGEEFAIVMPETDTGGAMVIAERIREKVGQLVFE 704

Query: 210 ISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              GP + +T+S G+A   +   ++P   +I RAD  LY AK+ GRN+ V  + + 
Sbjct: 705 TEQGP-LKVTLSLGVATFPDDGGQKP--ALIERADACLYHAKRHGRNQSVSAASLR 757


>gi|15891865|ref|NP_357537.1| GGDEF family protein [Agrobacterium tumefaciens str. C58]
 gi|15160355|gb|AAK90322.1| GGDEF family protein [Agrobacterium tumefaciens str. C58]
          Length = 589

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 85/163 (52%), Gaps = 4/163 (2%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDK 153
            R+  ++R D L+GLLN  +   +L  + EK    L+ +  DID+FK+ ND FGH  GD 
Sbjct: 422 QRLVGMARQDALTGLLNRRSLDEALNRHIEKPTGSLACLMLDIDHFKRFNDRFGHDAGDA 481

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+ +++  L         + R GGEEF      +  ++A  LA  LR  +E +       
Sbjct: 482 VMQYVAQVLSEATSDQGTLFRFGGEEFTVLMPDAGIEDATKLAEKLRHAVERAPFTYRGR 541

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               +TIS GIA       +S+++ RAD AL  AK++GRN+ V
Sbjct: 542 LLDPVTISIGIATAPGAGTVSSVLERADAALLSAKQTGRNKWV 584


>gi|82775715|ref|YP_402062.1| diguanylate cyclase AdrA [Shigella dysenteriae Sd197]
 gi|309786950|ref|ZP_07681562.1| diguanylate cyclase domain protein [Shigella dysenteriae 1617]
 gi|81239863|gb|ABB60573.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|308924528|gb|EFP70023.1| diguanylate cyclase domain protein [Shigella dysenteriae 1617]
          Length = 371

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTP-AESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367


>gi|331682992|ref|ZP_08383600.1| putative GGDEF domain protein [Escherichia coli H299]
 gi|327254180|gb|EGE65809.1| hypothetical protein ECSTEC7V_1611 [Escherichia coli STEC_7v]
 gi|331079813|gb|EGI51003.1| putative GGDEF domain protein [Escherichia coli H299]
          Length = 472

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254
           G+   C       +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|28869513|ref|NP_792132.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28852755|gb|AAO55827.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 323

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 94/185 (50%), Gaps = 18/185 (9%)

Query: 86  SGSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKLS 130
            GS+L   F+S      R+ +    LS  D L+G  N   F       +  +  +   LS
Sbjct: 137 DGSVLWHGFVSDITDLKRVEEELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLS 196

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           I+  DID+FK+IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   
Sbjct: 197 IIMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVVCPGTRGG 256

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +A  LA  LR+ + N  I    G    +T S GIA     E I T++ RAD  +Y AK++
Sbjct: 257 QAYQLALSLREGLRNQVIE---GVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQA 313

Query: 251 GRNRV 255
           GR+RV
Sbjct: 314 GRDRV 318


>gi|332098568|gb|EGJ03534.1| diguanylate cyclase domain protein [Shigella boydii 3594-74]
          Length = 320

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 106/201 (52%), Gaps = 25/201 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II +   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 125 LSLPII-VVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 183

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 184 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 243

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 244 VIMSGTPA-ESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 294

Query: 239 R-----ADQALYVAKKSGRNR 254
           R     AD ALY AKK+GRNR
Sbjct: 295 REWLKSADLALYKAKKAGRNR 315


>gi|291288622|ref|YP_003505438.1| response regulator receiver modulated diguanylate cyclase
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885782|gb|ADD69482.1| response regulator receiver modulated diguanylate cyclase
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 312

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 89/173 (51%), Gaps = 8/173 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           KEL  +Y++I  L+  D L+G+ N     + LG           K S++  DID+FK++N
Sbjct: 138 KELIEAYDKIEHLALTDTLTGIANRRNITNMLGKEAARCKRNKGKFSLIMCDIDFFKRVN 197

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD V+  +S  +         V R GGEEF      +    A  +A  LR  I
Sbjct: 198 DTYGHDAGDYVLKTISHVIQQALREQDIVARWGGEEFLIVLPETDAGNAVAVAEKLRTAI 257

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            N++++   G S  +T++ G++E      I   I +AD ALY  K++GRN+VV
Sbjct: 258 GNTEMSY-EGISFSVTMTFGVSEYDVSLGIEKSIKKADDALYEGKQTGRNKVV 309


>gi|85711690|ref|ZP_01042747.1| hypothetical protein OS145_00775 [Idiomarina baltica OS145]
 gi|85694550|gb|EAQ32491.1| hypothetical protein OS145_00775 [Idiomarina baltica OS145]
          Length = 363

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 92/165 (55%), Gaps = 10/165 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-YNEK----LSIVFFDIDYFKQINDNFGHPVGDK 153
           R+ ++++ D L+ L N      +L S Y E+    +S++  D+D FK+IND  GH  GD+
Sbjct: 189 RLEKMAKTDKLTQLYNRQYLDVTLFSLYKERRTLPISVLLLDVDLFKRINDEHGHLFGDE 248

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  ++ +L  V      VGR GGEEF   A  +S+ +A  LA  +R+      +N+S  
Sbjct: 249 VLVKMAQRLTEVVRDDDVVGRWGGEEFLIIAPNTSKSDALGLAERVRR-----SLNMSIT 303

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            S+  ++S G++     +    +I +AD+ALY AK +GRN+V  F
Sbjct: 304 ESVTTSVSIGVSSADRVKSPEELISQADRALYQAKSNGRNQVCSF 348


>gi|110641684|ref|YP_669414.1| hypothetical protein ECP_1506 [Escherichia coli 536]
 gi|191174149|ref|ZP_03035662.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli F11]
 gi|300978868|ref|ZP_07174387.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1]
 gi|110343276|gb|ABG69513.1| hypothetical protein YneF [Escherichia coli 536]
 gi|190905567|gb|EDV65193.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli F11]
 gi|300308087|gb|EFJ62607.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1]
 gi|324014838|gb|EGB84057.1| diguanylate cyclase domain protein [Escherichia coli MS 60-1]
          Length = 472

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254
           G+   C       +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|300918239|ref|ZP_07134844.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
 gi|300414582|gb|EFJ97892.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
          Length = 371

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II +   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPII-VVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367


>gi|317053536|ref|YP_004118670.1| diguanylate cyclase [Pantoea sp. At-9b]
 gi|316952641|gb|ADU72114.1| diguanylate cyclase [Pantoea sp. At-9b]
          Length = 571

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 84/167 (50%), Gaps = 13/167 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFF---DIDYFKQINDNFGHPVG 151
            R+  L+  D L+GL N  AF     SL S +    I+F    D+DYFK IND +GHPVG
Sbjct: 399 RRLQYLAETDELTGLFNRRAFDQTGESLLSGHRPGVIIFLIIMDLDYFKLINDRYGHPVG 458

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+   +D +           R+GGEEFA    G+    A  LA  ++K + N      
Sbjct: 459 DSVLTAAADVIRTHITEGDMAARIGGEEFAIVVSGTESTSALRLAESIQKGLHNRDSRAP 518

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYR-----ADQALYVAKKSGRN 253
            G  I+IT S GIA    K+  S   +R     AD ALY AK+SGR+
Sbjct: 519 DGDRINITASFGIA--GTKQDSSNTSWRQLIADADSALYEAKRSGRD 563


>gi|222086220|ref|YP_002544752.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
 gi|221723668|gb|ACM26824.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
          Length = 355

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 93/177 (52%), Gaps = 18/177 (10%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKLS-----IVFFDIDYFKQ 141
            + KEL   Y RI+     D L+ L N  AF   L + ++ +++     +V  DID+FK+
Sbjct: 164 QVRKELD-EYKRIAN---TDALTRLSNRRAFDDRLAAVFDNQMARPVTALVLADIDHFKK 219

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           INDN+GHPVGDK++A ++  +        FV R GGEEFA    G +  +A      +R+
Sbjct: 220 INDNYGHPVGDKILATVASVIRANVRREAFVARTGGEEFALILEGYTPDDALATCERIRR 279

Query: 202 IIE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +E     NS+  ++ GP   ITIS G+           +  +AD ALY AK +GRN
Sbjct: 280 ALEATPFKNSRTRVNYGP---ITISLGVCMASDATDPGELYGKADIALYSAKNAGRN 333


>gi|218688248|ref|YP_002396460.1| diguanylate cyclase AdrA [Escherichia coli ED1a]
 gi|218425812|emb|CAR06618.1| putative diguanylate cyclase [Escherichia coli ED1a]
          Length = 371

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTP-AESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367


>gi|331647045|ref|ZP_08348139.1| putative GGDEF domain protein [Escherichia coli M605]
 gi|331043828|gb|EGI15964.1| putative GGDEF domain protein [Escherichia coli M605]
          Length = 472

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254
           G+   C       +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|241761674|ref|ZP_04759761.1| diguanylate cyclase with beta propeller sensor [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|241373982|gb|EER63515.1| diguanylate cyclase with beta propeller sensor [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 839

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 63/172 (36%), Positives = 94/172 (54%), Gaps = 11/172 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           EL  +  ++S+L+  D L+GLLN  A ++ L   ++        +SI   D+D+FK+IND
Sbjct: 669 ELQQANKQLSELANTDVLTGLLNRRALMAKLSELHQDALLNENAISIAMLDVDHFKKIND 728

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGD V+   +  +        F GR GG+EF  A   S E    I A  +R   E
Sbjct: 729 RYGHLVGDDVMRNAASIIRNNIRQEDFAGRYGGDEFIIAISASIEMSRHI-AERIRN--E 785

Query: 205 NSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++I I +G + + IT+S G+ E   +E IS  + +AD  LY AK +GRNRV
Sbjct: 786 FTKIVIKNGETELKITVSIGLFEITTEESISIALDKADSLLYWAKNNGRNRV 837


>gi|228988642|ref|ZP_04148728.1| GGDEF domain protein [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228771093|gb|EEM19573.1| GGDEF domain protein [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 351

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 116/233 (49%), Gaps = 24/233 (10%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91
           SIFI  + F  N++   I + P      +L +++S+V + +  S +  YI+      +L+
Sbjct: 126 SIFIRWIWF--NVYSLSILIVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQ 179

Query: 92  --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
             ELF    ++ Q + ID L+GL N   F       IS+  + N+ L ++F DID+FK +
Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNRHISNKRTKNDSLCLLFIDIDHFKSV 236

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND + HP GD+V+  +   L  +   P    R GGEEFA             +   +R  
Sbjct: 237 NDTYRHPAGDEVLKQIGCILREISPFPDLAFRKGGEEFALLIPQKGLAYGMHMGEQVRAA 296

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E     +  G  I IT+S GI+   +++     I  AD ALY +K++GRN+V
Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|220917475|ref|YP_002492779.1| diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955329|gb|ACL65713.1| diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 764

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 13/176 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           +++  +L+  D L+GL NH  F   L +       Y ++ S++  DID+FK +ND +GHP
Sbjct: 585 FDQTERLATTDGLTGLTNHRTFQERLDAHLGQAQRYGKRTSLLLCDIDHFKSVNDTYGHP 644

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+V+  ++  L         V R GGEEFA     +    A ++A  +R+ +      
Sbjct: 645 VGDQVLRGVARTLARAARGTDVVARYGGEEFAIVMPETDTGGAMVIAERIREKVGQLVFE 704

Query: 210 ISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              GP + +T+S G+A   +   ++P   +I RAD  LY AK+ GRN+ V  + + 
Sbjct: 705 TEQGP-LKVTLSLGVATFPDDGAQKP--ALIERADACLYHAKRHGRNQSVSAASLR 757


>gi|16801091|ref|NP_471359.1| hypothetical protein lin2025 [Listeria innocua Clip11262]
 gi|16414526|emb|CAC97255.1| lin2025 [Listeria innocua Clip11262]
          Length = 379

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
            + Q + +D L+GL N   F  +  +           LS++  DIDYFK++ND +GH VG
Sbjct: 204 ELQQSTILDPLTGLTNFRHFEKTFEAAFHYATLKKSNLSLIIIDIDYFKRVNDTYGHLVG 263

Query: 152 DKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           + V++  S  L+ + F     + R+GGEEFA      +  E   LA  +R+ +E   + I
Sbjct: 264 NGVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPI 323

Query: 211 SSGPSIHITISAGIAERCHKE-P-ISTIIYRADQALYVAKKSGRNRV 255
           ++  S+ ITISAGIA    K  P  + +++ ADQALY AK++GRN+V
Sbjct: 324 ATTGSV-ITISAGIANYDGKNYPNANELMHAADQALYNAKRNGRNQV 369


>gi|193068692|ref|ZP_03049653.1| MASE2 domain/diguanylate cyclase [Escherichia coli E110019]
 gi|192958055|gb|EDV88497.1| MASE2 domain/diguanylate cyclase [Escherichia coli E110019]
          Length = 371

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTP-AESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367


>gi|169829516|ref|YP_001699674.1| diguanylate cyclase [Lysinibacillus sphaericus C3-41]
 gi|168994004|gb|ACA41544.1| putative diguanylate cyclase (GGDEF domain) [Lysinibacillus
           sphaericus C3-41]
          Length = 325

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 102 QLSRIDCLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
           +LS  D L+GL N   F       L SY E     S+   DID+FK++ND FGH VGD V
Sbjct: 163 ELSETDKLTGLKNRRFFQEKLEQQLNSYYESAKPFSLCILDIDHFKKVNDTFGHQVGDDV 222

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +A L+  L         V R GGEEF      +    A  +   +RK +      +   P
Sbjct: 223 LAQLAQLLTQRARKEDTVVRYGGEEFVMILPETEIAAAKEIGEQIRKTV-----ALDHWP 277

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              +TIS G+A    K+  +T++  AD ALY +KK+GRN+V  F D++
Sbjct: 278 VGQVTISIGLATVTSKDTGTTLLKNADDALYASKKNGRNQVTHFYDMK 325


>gi|197122692|ref|YP_002134643.1| diguanylate cyclase [Anaeromyxobacter sp. K]
 gi|196172541|gb|ACG73514.1| diguanylate cyclase [Anaeromyxobacter sp. K]
          Length = 764

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 13/176 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           +++  +L+  D L+GL NH  F   L +       Y ++ S++  DID+FK +ND +GHP
Sbjct: 585 FDQTERLATTDGLTGLTNHRTFQERLDAHLGQAQRYGKRTSLLLCDIDHFKSVNDTYGHP 644

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+V+  ++  L         V R GGEEFA     +    A ++A  +R+ +      
Sbjct: 645 VGDQVLRGVARTLARAARGTDVVARYGGEEFAIVMPETDTGGAMVIAERIREKVGQLVFE 704

Query: 210 ISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              GP + +T+S G+A   +   ++P   +I RAD  LY AK+ GRN+ V  + + 
Sbjct: 705 TEQGP-LKVTLSLGVATFPDDGAQKP--ALIERADACLYHAKRHGRNQSVSAASLR 757


>gi|95931350|ref|ZP_01314063.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95132593|gb|EAT14279.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 762

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 95/191 (49%), Gaps = 15/191 (7%)

Query: 81  LLGYISG--SILKELFISYN-RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLS 130
           +L +I+G  S+       YN R+  LS  D L+GL N       L         Y     
Sbjct: 576 VLAFIAGVFSVHYYQLRKYNQRLLVLSETDKLTGLANRLKLDKMLLEQEQLFVRYQIPCG 635

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++ FDID+FK +ND +GHPVGD+V+  ++  +         VGR GGEEF   A  S+ +
Sbjct: 636 VIIFDIDHFKTVNDTYGHPVGDQVLKEIAQLIRENIRVTDHVGRWGGEEFLIIAPSSNRE 695

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           E   LA+ L   + N Q +        +T S G+    H+   S ++  AD+ALY AK  
Sbjct: 696 ETEQLADKLLSALRNHQFDQVGT----VTASFGVCALRHELSASKVLSLADKALYQAKAE 751

Query: 251 GRNRVV-CFSD 260
           GRNRV+ C S+
Sbjct: 752 GRNRVISCVSE 762


>gi|331016194|gb|EGH96250.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 786

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 94/184 (51%), Gaps = 18/184 (9%)

Query: 87  GSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
           GS+L   F+S      R+ +    LS  D L+G  N   F       +  +  +   LSI
Sbjct: 601 GSVLWHGFVSDITDLKRVEEELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSI 660

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK+IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +
Sbjct: 661 IMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVVCPGTRGGQ 720

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A  LA  LR+ + N  I    G    +T S GIA     E I T++ RAD  +Y AK++G
Sbjct: 721 AYQLALSLREGLRNQVIE---GVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQAG 777

Query: 252 RNRV 255
           R+RV
Sbjct: 778 RDRV 781


>gi|296282041|ref|ZP_06860039.1| hypothetical protein CbatJ_00385 [Citromicrobium bathyomarinum
           JL354]
          Length = 348

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 119/251 (47%), Gaps = 20/251 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL 69
           ++ L  ++N ++F      + F +   + +   +F A         TP+   +  L E +
Sbjct: 96  TLALARKRNRDAFENGLVALGFLVITGVILRVPMFPA----LLDEPTPWAVFDAALFERV 151

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-SYNEK 128
            +  + +  + L   I   I+ ++ + Y   S+    D L+ LLN  AF + +G      
Sbjct: 152 YIQCMGVLNASLALLIVARIVAKVIVGYRHSSER---DGLTELLNRRAFDALVGRPATAP 208

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVI----AFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
            +I+  DID FKQIND FGH VGD+VI      LS+            GR+GGEEFA   
Sbjct: 209 GAIIMCDIDRFKQINDRFGHHVGDEVIRSFACMLSEH-------GHHAGRVGGEEFALLL 261

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
           L +   EAA  A  +R    +S  + + GP + ++ S G+A       +   +  AD+AL
Sbjct: 262 LDTGLDEAAAQAERIRSAF-DSLYHPAIGPDVQLSASFGVAAFEPGSSVRAAMRSADRAL 320

Query: 245 YVAKKSGRNRV 255
           Y AK +GRNRV
Sbjct: 321 YTAKHTGRNRV 331


>gi|261251076|ref|ZP_05943650.1| hypothetical protein VIA_001095 [Vibrio orientalis CIP 102891]
 gi|260937949|gb|EEX93937.1| hypothetical protein VIA_001095 [Vibrio orientalis CIP 102891]
          Length = 457

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 76/140 (54%), Gaps = 1/140 (0%)

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           E L++V  DID+FK+INDN+GH VGD  ++  ++           +GR+GGEEFA   L 
Sbjct: 319 EPLAVVIIDIDHFKKINDNYGHQVGDLALSRFAEMCCREIRASDIIGRIGGEEFAIILLN 378

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
                   +   +RK +  S  N S   S+ +TIS G+A       +  +I RAD ALY 
Sbjct: 379 VDLAIVNEVTERIRKRVAESNFN-SEVSSLSMTISLGVALSDQAHTLEHLIKRADGALYQ 437

Query: 247 AKKSGRNRVVCFSDIENNTC 266
           AK SGRNRVV    ++  +C
Sbjct: 438 AKVSGRNRVVISEQVKEESC 457


>gi|251791755|ref|YP_003006476.1| PAS/PAC and GAF sensors-containing diguanylate cyclase [Dickeya
           zeae Ech1591]
 gi|247540376|gb|ACT08997.1| diguanylate cyclase with PAS/PAC and GAF sensors [Dickeya zeae
           Ech1591]
          Length = 771

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 11/168 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           ++ +++  D L+G+ N  A+I        ++ +  ++   DID+FK++ND +GH VGD  
Sbjct: 603 KLLEMANTDVLTGIHNRRAYILETEKCYRNHEKNTALAIIDIDFFKKVNDQYGHHVGDVA 662

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           I  L++ +     T  FV RLGGEEF      ++      + N +R  +EN+   +  G 
Sbjct: 663 ICRLAEIITSKLRTDDFVARLGGEEFGLIVHNANLDNVDAIMNGIRTEVENTLFTV-DGY 721

Query: 215 SIHITISAGIAERCH------KEPISTIIYRADQALYVAKKSGRNRVV 256
           S H T+S G     H      K+   + + RAD ALY AK +GRNRVV
Sbjct: 722 SFHFTVSIGATFIKHRNIQSLKDNFESDMKRADDALYEAKNAGRNRVV 769


>gi|114776517|ref|ZP_01451562.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Mariprofundus ferrooxydans PV-1]
 gi|114553347|gb|EAU55745.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Mariprofundus ferrooxydans PV-1]
          Length = 592

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 83/163 (50%), Gaps = 13/163 (7%)

Query: 101 SQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
             L+R D L+G LN  A   S          YN  L++V  D+D FK INDN+GH  GD 
Sbjct: 425 EHLARTDALTGALNRRACFESGETEFDRARRYNTPLAVVMIDLDLFKSINDNYGHATGDA 484

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  + + L  +  T   +GR+GGEEF      +S Q+AA L    R  I   ++ +   
Sbjct: 485 VLVAVVETLRGMTRTVDTIGRIGGEEFIVLLPQTSLQDAAALTERYRGAIGQLEVTLDD- 543

Query: 214 PSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRN 253
            +I +T S G+A  C     E ++  I RAD ALY AK  GRN
Sbjct: 544 LAIKVTASFGVA--CVDVTGETLTQAIGRADAALYRAKSRGRN 584


>gi|91210764|ref|YP_540750.1| hypothetical protein UTI89_C1741 [Escherichia coli UTI89]
 gi|117623743|ref|YP_852656.1| hypothetical protein APECO1_642 [Escherichia coli APEC O1]
 gi|218558425|ref|YP_002391338.1| membrane-associated diguanylate cyclase (GGDEF domain) [Escherichia
           coli S88]
 gi|237705492|ref|ZP_04535973.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91072338|gb|ABE07219.1| hypothetical protein YneF [Escherichia coli UTI89]
 gi|115512867|gb|ABJ00942.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|218365194|emb|CAR02914.1| putative membrane-associated diguanylate cyclase (GGDEF domain)
           [Escherichia coli S88]
 gi|226900249|gb|EEH86508.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|294491119|gb|ADE89875.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           IHE3034]
 gi|307626960|gb|ADN71264.1| putative membrane-associated diguanylate cyclase (GGDEF domain)
           [Escherichia coli UM146]
 gi|315286216|gb|EFU45652.1| diguanylate cyclase domain protein [Escherichia coli MS 110-3]
 gi|323952538|gb|EGB48410.1| GGDEF domain-containing protein [Escherichia coli H252]
 gi|323956717|gb|EGB52452.1| GGDEF domain-containing protein [Escherichia coli H263]
          Length = 472

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254
           G+   C       +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|83593925|ref|YP_427677.1| diguanylate cyclase [Rhodospirillum rubrum ATCC 11170]
 gi|83576839|gb|ABC23390.1| Putative diguanylate cyclase (GGDEF domain) [Rhodospirillum rubrum
           ATCC 11170]
          Length = 569

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 88/163 (53%), Gaps = 12/163 (7%)

Query: 104 SRIDCLSGLLNHSAFIS--------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +R D L+GLLN  +F+         SL  Y    +++  D+D+FK +ND  GH VGD V+
Sbjct: 400 ARTDFLTGLLNRRSFVDLAERELARSL-RYQRPFTLLMIDVDHFKAVNDTRGHLVGDVVL 458

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++ ++          GR GGEEFAA  + +   EA  +A  L  ++   +I    G  
Sbjct: 459 QNVARRIKETLRLIDIFGRTGGEEFAAVIVETGGPEALEIARRLCAVVARDEIVQPEGEP 518

Query: 216 IHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVV 256
           I +TIS G+  R +   I  S ++  ADQALY AK++GRN+VV
Sbjct: 519 IGVTISIGLT-RSNGRSISFSALMNEADQALYAAKRAGRNQVV 560


>gi|115525334|ref|YP_782245.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
 gi|115519281|gb|ABJ07265.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
          Length = 349

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 89/166 (53%), Gaps = 9/166 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D ++G+ N   F++           Y   +S +  DIDYFK IND FGH VGD
Sbjct: 160 LERLATTDGMTGVYNRRHFLTLADREWARARRYGRPISFLMIDIDYFKSINDGFGHHVGD 219

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           ++I  L++           + R+GGEEFA     +   +A I+A  LR  +    + ++S
Sbjct: 220 EMIVHLANLARDCKRECDVLARIGGEEFALLLPETDLPQAQIIAERLRAEVAAKALVVAS 279

Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           G SI  T+S G+A        IS ++  ADQALY AK +GRNRV+C
Sbjct: 280 G-SIPATVSIGVATSAAAMNDISDLMKAADQALYDAKHAGRNRVIC 324


>gi|330895801|gb|EGH28090.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 418

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 89/167 (53%), Gaps = 11/167 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +++  D L+GL N  +        I ++    +  S++  DID+FK +ND +GHP 
Sbjct: 255 QKLLEIAHSDPLTGLDNRRSAEHTLERQIPAVSMSGKPFSLIICDIDHFKAVNDRYGHPA 314

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VI  ++  L           R GGEEF      SS ++AA LA  +RK +E+  I  
Sbjct: 315 GDSVITSVAAILKQRIRLLDVAARWGGEEFLILVPDSSLKQAAELAERIRKSVESLVIPE 374

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +      +TIS G+AE    E  + +I RAD+ALY AK+ GRNRV C
Sbjct: 375 TGS----VTISLGVAELSAGETAAGLIQRADKALYQAKRLGRNRVEC 417


>gi|215486735|ref|YP_002329166.1| predicted diguanylate cyclase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215264807|emb|CAS09191.1| predicted diguanylate cyclase [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 472

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254
           G+   C       +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|148547132|ref|YP_001267234.1| diguanylate cyclase [Pseudomonas putida F1]
 gi|148511190|gb|ABQ78050.1| diguanylate cyclase [Pseudomonas putida F1]
          Length = 469

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 13/169 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE---------KLSIVFFDIDYFKQINDNFGHP 149
           R++  + +D L+G+L  SAF     +  E          L+++  DID+FK IND  GH 
Sbjct: 292 RLAHQATVDHLTGVLTRSAFTRRANALLESRQQHAQALPLTLMMLDIDHFKSINDAHGHA 351

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+V+   +  L         + RLGGEEF     G + + A  +A  LR+ I++  + 
Sbjct: 352 VGDQVLRQFASTLQDQLHNDELIARLGGEEFVVILPGLAPERANFIAERLRRAIQDLHV- 410

Query: 210 ISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRV 255
           + +   + IT+S G+A      P   +  ++  ADQALY AK  GRNRV
Sbjct: 411 VQADQRLQITVSIGVAGCDADMPAPSLDELLASADQALYRAKARGRNRV 459


>gi|281178630|dbj|BAI54960.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|330911367|gb|EGH39877.1| hypothetical protein ECAA86_01722 [Escherichia coli AA86]
          Length = 472

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254
           G+   C       +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|324006875|gb|EGB76094.1| diguanylate cyclase domain protein [Escherichia coli MS 57-2]
          Length = 472

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254
           G+   C       +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|110804408|ref|YP_687928.1| diguanylate cyclase AdrA [Shigella flexneri 5 str. 8401]
 gi|110613956|gb|ABF02623.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 371

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 106/201 (52%), Gaps = 25/201 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II +   L+ G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPII-VVYPLMFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVVLTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTPA-ESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNR 254
           R     AD ALY AKK+GRNR
Sbjct: 346 REWLKSADLALYKAKKAGRNR 366


>gi|330875542|gb|EGH09691.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 786

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 94/184 (51%), Gaps = 18/184 (9%)

Query: 87  GSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
           GS+L   F+S      R+ +    LS  D L+G  N   F       +  +  +   LSI
Sbjct: 601 GSVLWHGFVSDITDLKRVEEELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSI 660

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK+IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +
Sbjct: 661 IMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVVCPGTRGGQ 720

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A  LA  LR+ + N  I    G    +T S GIA     E I T++ RAD  +Y AK++G
Sbjct: 721 AYQLALSLREGLRNQVIE---GVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQAG 777

Query: 252 RNRV 255
           R+RV
Sbjct: 778 RDRV 781


>gi|331663017|ref|ZP_08363927.1| putative GGDEF domain protein [Escherichia coli TA143]
 gi|331058816|gb|EGI30793.1| putative GGDEF domain protein [Escherichia coli TA143]
          Length = 472

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254
           G+   C       +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|331645556|ref|ZP_08346660.1| protein AdrA [Escherichia coli M605]
 gi|330910177|gb|EGH38687.1| protein YaiC [Escherichia coli AA86]
 gi|331045718|gb|EGI17844.1| protein AdrA [Escherichia coli M605]
          Length = 371

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTP-AESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367


>gi|229492096|ref|ZP_04385906.1| diguanylate cyclase [Rhodococcus erythropolis SK121]
 gi|229320993|gb|EEN86804.1| diguanylate cyclase [Rhodococcus erythropolis SK121]
          Length = 361

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 101/213 (47%), Gaps = 31/213 (14%)

Query: 67  ENLSLVIISITISLLLGYIS----GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           E L+  ++S  +S+ + ++     G++ + L +S  R  +L+  D L+GL N   F+  +
Sbjct: 124 EGLASALVSCAVSVAVIWLPVFMIGTLRRSLEVSRARYRELANTDPLTGLPNRRGFLDRV 183

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
             Y  +       +  +  D+D+FKQIND+ GH  GD V+  +        GT + VGR 
Sbjct: 184 ERYTRENSSSASEVGFLVIDVDHFKQINDHLGHAAGDDVLNEVVAATRRAVGTDVLVGRF 243

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENS-QINIS----------SGPSIHITISAGI 224
           GGEEF A    S+  E   LA  +R  + +S  + +S           GP+  +T+    
Sbjct: 244 GGEEFVACFPASNFDEVVTLAESIRSAVADSCDVTVSIGGIFCAVDDHGPAPSMTL---- 299

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                 E +  +  RAD  +Y AK +GR+ V C
Sbjct: 300 -----NEFVDVLTCRADTLMYAAKAAGRDTVRC 327


>gi|26247800|ref|NP_753840.1| hypothetical protein c1945 [Escherichia coli CFT073]
 gi|227886093|ref|ZP_04003898.1| possible diguanylate cyclase [Escherichia coli 83972]
 gi|301050222|ref|ZP_07197114.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1]
 gi|306813485|ref|ZP_07447675.1| putative diguanylate cyclase [Escherichia coli NC101]
 gi|331657518|ref|ZP_08358480.1| putative GGDEF domain protein [Escherichia coli TA206]
 gi|26108202|gb|AAN80402.1|AE016760_261 Hypothetical protein yneF [Escherichia coli CFT073]
 gi|222033262|emb|CAP76002.1| Uncharacterized protein yneF [Escherichia coli LF82]
 gi|227837022|gb|EEJ47488.1| possible diguanylate cyclase [Escherichia coli 83972]
 gi|300298047|gb|EFJ54432.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1]
 gi|305853230|gb|EFM53670.1| putative diguanylate cyclase [Escherichia coli NC101]
 gi|307553524|gb|ADN46299.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli ABU
           83972]
 gi|312946100|gb|ADR26927.1| predicted diguanylate cyclase [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315297465|gb|EFU56744.1| diguanylate cyclase domain protein [Escherichia coli MS 16-3]
 gi|331055766|gb|EGI27775.1| putative GGDEF domain protein [Escherichia coli TA206]
          Length = 472

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254
           G+   C       +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|77361836|ref|YP_341411.1| GGDEF domain-containing protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876747|emb|CAI87969.1| conserved protein of unknown function ; putative GGDEF domain
           protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 621

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 94/181 (51%), Gaps = 15/181 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQI 142
           L+EL      + QL+  D L+G+ N   F   L      S  E+  LS++  DID FK I
Sbjct: 434 LRELEEKNRELEQLNMEDPLTGIKNRRFFDKKLVMELRRSRREQTPLSVIMLDIDKFKVI 493

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD+VI   +D +      P+  V R GGEEF      +    A  +A  +R 
Sbjct: 494 NDTYGHLTGDQVIRTAADTIKKQLQRPLDEVARYGGEEFVVLLPNTQNDGAIAIAEKIRH 553

Query: 202 IIENSQINISSGPSIHITISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I  + +++ +G +I  TISAG    +AE  +   I T   RAD+ALY AK+ GRN+V+ 
Sbjct: 554 AIATNNVHV-AGTTISFTISAGVYTSVAEDINNPEIFT--ERADKALYFAKQHGRNQVIN 610

Query: 258 F 258
           F
Sbjct: 611 F 611


>gi|34556843|ref|NP_906658.1| hypothetical protein WS0414 [Wolinella succinogenes DSM 1740]
 gi|34482558|emb|CAE09558.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 431

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 84/169 (49%), Gaps = 13/169 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++  ++  D L+G+ N   F       I    S N   S++  D+D FK IND  GH  
Sbjct: 268 QKLEHIAHTDTLTGVWNRYKFNKILRQEIKCAKSSNHPFSLMLLDVDRFKTINDTHGHQF 327

Query: 151 GDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD+V+  ++  L          + R GGEEF   A G    +A  LA  LR  IE  +  
Sbjct: 328 GDRVLKAITSTLKRQLKHKEAMIARWGGEEFIVLAQGYRLAQALELAERLRAAIEGMEFE 387

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                +I IT S G+ E   ++ + T++ RAD ALY AK+SGRNR++ +
Sbjct: 388 -----NIPITSSFGVTEFSPEDELDTLVRRADLALYTAKESGRNRIISY 431


>gi|302340439|ref|YP_003805645.1| 7TM domain sensor diguanylate cyclase [Spirochaeta smaragdinae DSM
           11293]
 gi|301637624|gb|ADK83051.1| 7TM domain sensor diguanylate cyclase [Spirochaeta smaragdinae DSM
           11293]
          Length = 589

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 93/171 (54%), Gaps = 15/171 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISS-LGSY------NEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ +LSRID L+ + N   F     G +      N  LS++  D+D+FK  NDN+GHP 
Sbjct: 406 QRLERLSRIDPLTEIPNRRYFEEVYTGEWRRSERENLPLSLIMMDVDFFKAYNDNYGHPT 465

Query: 151 GD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           GD   K IA L  + +       FV R GGEEF     G   + AA +A  LR+ I++  
Sbjct: 466 GDVCLKKIATLVQESLKRGED--FVARYGGEEFIILLPGHPLESAAKVAERLRQGIQDLN 523

Query: 208 I-NISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255
           I +  S  +  +T+S GIAE+  +  I    ++  ADQALY AK+SGRNRV
Sbjct: 524 IVHAYSEVASVVTVSLGIAEKHIRPGIDRGILVKLADQALYSAKRSGRNRV 574


>gi|313618170|gb|EFR90254.1| ggdef domain-containing protein [Listeria innocua FSL S4-378]
          Length = 367

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
            + Q + +D L+GL N   F  +  +           LS++  DIDYFK++ND +GH VG
Sbjct: 192 ELQQSTILDPLTGLTNFRHFEKTFEAAFHYATLKKSNLSLIIIDIDYFKRVNDTYGHLVG 251

Query: 152 DKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           + V++  S  L+ + F     + R+GGEEFA      +  E   LA  +R+ +E   + I
Sbjct: 252 NGVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPI 311

Query: 211 SSGPSIHITISAGIAERCHKE-P-ISTIIYRADQALYVAKKSGRNRV 255
           ++  S+ ITISAGIA    K  P  + +++ ADQALY AK++GRN+V
Sbjct: 312 ATTGSV-ITISAGIANYDGKNYPNANELMHAADQALYNAKRNGRNQV 357


>gi|120612291|ref|YP_971969.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
 gi|120590755|gb|ABM34195.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
          Length = 357

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 109/235 (46%), Gaps = 22/235 (9%)

Query: 40  ATVIFIANIFLFYIGL----------TPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
           AT + +  +F+FY+G+           P   L   +    ++ ++    +    Y  GS+
Sbjct: 126 ATPVMLFALFVFYVGMYEFSRRHGAQAPLDPLGQSIAHAFNVAVVFAMAAYTARYYYGSV 185

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           L+    +  R+ + +  D L+GL N           I+   +  +  S+V  DID+FK+I
Sbjct: 186 LR----AERRLEEQACTDPLTGLSNRRRLAGLAQERIAQARAAGQPTSVVIADIDHFKRI 241

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD+V+  +++ +         + R GGEEF          +A  LA  +R I
Sbjct: 242 NDTHGHEAGDQVLVHVAELMERSSRAHDLLARWGGEEFLLVMPSCGLGDAQALAERMRAI 301

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +        +  +I  ++S G+A+    E +   I RADQALY +K++GRNRV  
Sbjct: 302 VAGHPARRDT-QAIPASLSLGVAQLRGGESLEAAIARADQALYASKEAGRNRVTT 355


>gi|83718387|ref|YP_440550.1| GGDEF domain-containing protein [Burkholderia thailandensis E264]
 gi|167579235|ref|ZP_02372109.1| GGDEF domain protein [Burkholderia thailandensis TXDOH]
 gi|167617358|ref|ZP_02385989.1| GGDEF domain protein [Burkholderia thailandensis Bt4]
 gi|257141212|ref|ZP_05589474.1| GGDEF domain-containing protein [Burkholderia thailandensis E264]
 gi|83652212|gb|ABC36276.1| GGDEF domain protein [Burkholderia thailandensis E264]
          Length = 311

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 93/180 (51%), Gaps = 11/180 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           + +E   +  ++ + +  D L+G+ N   F        S    Y   LS++ FD+D+FK 
Sbjct: 134 MQREREEAVAKLQEYANRDGLTGIANRRFFEARLRDEFSRWQRYGGNLSVLLFDLDHFKA 193

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH VGD V+  ++ ++  V  T    GR GGEEFA     +S  EA  +A  +R+
Sbjct: 194 INDRFGHVVGDNVLRVMAQRVADVVRTQDTFGRFGGEEFALLLPCTSLDEAMHVAEKIRQ 253

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFS 259
            I N+ I  + G  + +T S G A   H   ++  T++  AD ALY AK+ GRN  V F 
Sbjct: 254 TIGNTPIE-AEGVRVPVTASVGGAA-AHVGALTHETLVNEADAALYRAKRQGRNCSVAFG 311


>gi|50120615|ref|YP_049782.1| hypothetical protein ECA1681 [Pectobacterium atrosepticum SCRI1043]
 gi|49611141|emb|CAG74587.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 442

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 73/130 (56%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           N  LSI   DID+FK +ND +GH  GD ++  +++ L        +V R GGEEF    +
Sbjct: 308 NTPLSIAMIDIDHFKSVNDTYGHAAGDNILKRIAEILYESTRNSDYVFRYGGEEFLIVLI 367

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            + +  A  +   LRK IEN  I++ +G S+ +TISAGIA          +I  AD ALY
Sbjct: 368 ETPKVAAHTIIERLRKKIENHFIHLQNGESVKMTISAGIAVYSGHPDYECLIKAADDALY 427

Query: 246 VAKKSGRNRV 255
            AK +GRNR+
Sbjct: 428 QAKANGRNRI 437


>gi|295699214|ref|YP_003607107.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
 gi|295438427|gb|ADG17596.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
          Length = 381

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 113/214 (52%), Gaps = 28/214 (13%)

Query: 65  LVENLSLVIISIT--ISLLLGYISGSILK--ELFISYNRISQ----LSRIDCLSGLLNHS 116
           L+E  SL+ +S+   + L LG ++   L    + ++++R+++    L+ +D L+G L+  
Sbjct: 174 LLEQASLMQVSMPNIVFLALGILAPPFLSIGVVMLAHDRLAERLERLANVDDLTGALSRR 233

Query: 117 AFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI----AFLSDQLVV- 164
           AFI   G+           ++I   DID FK +ND  GH  GD+V+    AF++ +L + 
Sbjct: 234 AFIEIGGALLNASLRTGSPVAIAIVDIDSFKAVNDTHGHAAGDQVLTHFAAFVARELRIG 293

Query: 165 -VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
            VFG      RLGGEEF      +S  EA +L   LR  +  + +       +  T S G
Sbjct: 294 DVFG------RLGGEEFGVLCPATSAAEAVVLLERLRARLA-ATVPDERPRGLRYTFSVG 346

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + ++   E ++ ++ RAD+ALY AK +GR+RV+ 
Sbjct: 347 VDQQRRGESLAQLMARADRALYAAKAAGRDRVMA 380


>gi|251794742|ref|YP_003009473.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus sp. JDR-2]
 gi|247542368|gb|ACS99386.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus sp. JDR-2]
          Length = 324

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 84/175 (48%), Gaps = 12/175 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIN 143
           +EL     ++  L+  D L+GL N   F   L  Y E        LS+   DID FK IN
Sbjct: 152 QELLDLNEKLEALASTDPLTGLKNRRYFQEQLQKYTELSEQTEAALSLCIVDIDRFKSIN 211

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHPVGD V+  L+  L         V R GGEEF        +++A + A   R   
Sbjct: 212 DTYGHPVGDLVLTRLAQLLQEQSPDGAVVARFGGEEFVILLPELDQEQALVAAERYRAAT 271

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           E + +       + ITIS G A     E   +++ +ADQALY +K +GRNRV  +
Sbjct: 272 ETTPLG-----DLRITISIGTATFAAAETELSLLQQADQALYHSKNNGRNRVTHY 321


>gi|187926309|ref|YP_001892654.1| diguanylate cyclase with GAF sensor [Ralstonia pickettii 12J]
 gi|241665797|ref|YP_002984156.1| diguanylate cyclase [Ralstonia pickettii 12D]
 gi|187728063|gb|ACD29227.1| diguanylate cyclase with GAF sensor [Ralstonia pickettii 12J]
 gi|240867824|gb|ACS65484.1| diguanylate cyclase with GAF sensor [Ralstonia pickettii 12D]
          Length = 348

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/186 (34%), Positives = 96/186 (51%), Gaps = 17/186 (9%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFF 134
           L     SIL EL I+ +     S  D + G+ N  A +  L         Y + LS++  
Sbjct: 163 LSETQRSILTELQIARHE----SLTDPMLGIWNRRAAMELLTRECGHAMRYGQPLSLLVV 218

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D+FK++ND +GHPVGD V+  ++  L V       VGR GGEEF      ++  +A+ 
Sbjct: 219 DVDHFKRVNDTYGHPVGDAVLVEIARTLRVNSRPIDAVGRYGGEEFLVVLPDTTTLQASD 278

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKS 250
           +A  LR  +E+ +I      +I  +IS G+A  C  E      + +I RAD AL  AK+ 
Sbjct: 279 IAERLRSAVESLEIATPEA-NIRSSISVGLAS-CEPEKNLCTPTDLIMRADAALLAAKRL 336

Query: 251 GRNRVV 256
           GRNRV+
Sbjct: 337 GRNRVI 342


>gi|89093635|ref|ZP_01166582.1| putative signal transduction protein [Oceanospirillum sp. MED92]
 gi|89082031|gb|EAR61256.1| putative signal transduction protein [Oceanospirillum sp. MED92]
          Length = 478

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 92/176 (52%), Gaps = 10/176 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ Q S  D L+GL N   F        S    YN+ L+++  DID FKQIND FGH  
Sbjct: 294 RRLYQRSVTDSLTGLYNRQHFKFRAEQEASRAVRYNQPLTMLMIDIDQFKQINDKFGHQT 353

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+   S  +         +GR GGEEF      S  ++A   A+ +R  ++ S I I
Sbjct: 354 GDTVLQQASQYIRDNLRESDLLGRYGGEEFIVLLPQSDLEQATQCADRIRDSLDKS-IFI 412

Query: 211 SSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             G  + I++S G+A++     +   ++ +ADQALY AK++GRNR+  ++  E  +
Sbjct: 413 -YGSLVSISVSVGLAQQSPDTFVYDELVSQADQALYTAKRNGRNRIEIYAATEEGS 467


>gi|331673049|ref|ZP_08373826.1| putative GGDEF domain protein [Escherichia coli TA280]
 gi|284921409|emb|CBG34477.1| putative signal transduction protein [Escherichia coli 042]
 gi|331069828|gb|EGI41206.1| putative GGDEF domain protein [Escherichia coli TA280]
          Length = 472

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254
           G+   C       +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|91209450|ref|YP_539436.1| diguanylate cyclase AdrA [Escherichia coli UTI89]
 gi|110640646|ref|YP_668374.1| diguanylate cyclase AdrA [Escherichia coli 536]
 gi|117622648|ref|YP_851561.1| diguanylate cyclase AdrA [Escherichia coli APEC O1]
 gi|218557295|ref|YP_002390208.1| diguanylate cyclase AdrA [Escherichia coli S88]
 gi|237707626|ref|ZP_04538107.1| diguanylate cyclase AdrA [Escherichia sp. 3_2_53FAA]
 gi|306813149|ref|ZP_07447342.1| diguanylate cyclase AdrA [Escherichia coli NC101]
 gi|91071024|gb|ABE05905.1| hypothetical protein UTI89_C0404 [Escherichia coli UTI89]
 gi|110342238|gb|ABG68475.1| hypothetical protein YaiC [Escherichia coli 536]
 gi|115511772|gb|ABI99846.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|218364064|emb|CAR01729.1| putative diguanylate cyclase [Escherichia coli S88]
 gi|222032181|emb|CAP74920.1| Uncharacterized protein yaiC [Escherichia coli LF82]
 gi|226898836|gb|EEH85095.1| diguanylate cyclase AdrA [Escherichia sp. 3_2_53FAA]
 gi|294490300|gb|ADE89056.1| MASE2 domain/diguanylate cyclase [Escherichia coli IHE3034]
 gi|305853912|gb|EFM54351.1| diguanylate cyclase AdrA [Escherichia coli NC101]
 gi|307628147|gb|ADN72451.1| diguanylate cyclase AdrA [Escherichia coli UM146]
 gi|312944962|gb|ADR25789.1| diguanylate cyclase AdrA [Escherichia coli O83:H1 str. NRG 857C]
 gi|315289812|gb|EFU49202.1| diguanylate cyclase domain protein [Escherichia coli MS 110-3]
 gi|323953003|gb|EGB48871.1| diguanylate cyclase domain-containing protein [Escherichia coli
           H252]
 gi|323958578|gb|EGB54281.1| diguanylate cyclase domain-containing protein [Escherichia coli
           H263]
 gi|324010735|gb|EGB79954.1| diguanylate cyclase domain protein [Escherichia coli MS 60-1]
          Length = 371

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367


>gi|16128370|ref|NP_414919.1| diguanylate cyclase for cellulose, biofilm, motility regulation
           [Escherichia coli str. K-12 substr. MG1655]
 gi|26246387|ref|NP_752426.1| diguanylate cyclase AdrA [Escherichia coli CFT073]
 gi|89107256|ref|AP_001036.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           W3110]
 gi|170021242|ref|YP_001726196.1| diguanylate cyclase AdrA [Escherichia coli ATCC 8739]
 gi|170079972|ref|YP_001729292.1| diguanylate cyclase [Escherichia coli str. K-12 substr. DH10B]
 gi|170683904|ref|YP_001742518.1| diguanylate cyclase AdrA [Escherichia coli SMS-3-5]
 gi|194438882|ref|ZP_03070967.1| MASE2 domain/diguanylate cyclase [Escherichia coli 101-1]
 gi|209917597|ref|YP_002291681.1| diguanylate cyclase AdrA [Escherichia coli SE11]
 gi|218703667|ref|YP_002411186.1| diguanylate cyclase AdrA [Escherichia coli UMN026]
 gi|227884611|ref|ZP_04002416.1| possible diguanylate cyclase [Escherichia coli 83972]
 gi|238899675|ref|YP_002925471.1| putative diguanylate cyclase [Escherichia coli BW2952]
 gi|253774633|ref|YP_003037464.1| diguanylate cyclase AdrA [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254160451|ref|YP_003043559.1| diguanylate cyclase AdrA [Escherichia coli B str. REL606]
 gi|256023997|ref|ZP_05437862.1| diguanylate cyclase AdrA [Escherichia sp. 4_1_40B]
 gi|293403503|ref|ZP_06647594.1| adrA [Escherichia coli FVEC1412]
 gi|293408528|ref|ZP_06652367.1| adrA [Escherichia coli B354]
 gi|293413636|ref|ZP_06656285.1| adrA [Escherichia coli B185]
 gi|297517446|ref|ZP_06935832.1| diguanylate cyclase AdrA [Escherichia coli OP50]
 gi|298379114|ref|ZP_06988995.1| adrA [Escherichia coli FVEC1302]
 gi|300900442|ref|ZP_07118612.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1]
 gi|300903354|ref|ZP_07121282.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|300930324|ref|ZP_07145736.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
 gi|300947970|ref|ZP_07162115.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1]
 gi|300988117|ref|ZP_07178554.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1]
 gi|301301529|ref|ZP_07207664.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|307137027|ref|ZP_07496383.1| diguanylate cyclase AdrA [Escherichia coli H736]
 gi|331640900|ref|ZP_08342035.1| protein AdrA [Escherichia coli H736]
 gi|331651313|ref|ZP_08352338.1| protein AdrA [Escherichia coli M718]
 gi|331661758|ref|ZP_08362681.1| protein AdrA [Escherichia coli TA143]
 gi|77416708|sp|P0AAP2|ADRA_ECOL6 RecName: Full=Protein AdrA
 gi|77416709|sp|P0AAP1|ADRA_ECOLI RecName: Full=Probable diguanylate cyclase AdrA; Short=DGC
 gi|26106785|gb|AAN78970.1|AE016756_153 Hypothetical protein yaiC [Escherichia coli CFT073]
 gi|1657581|gb|AAB18109.1| also previously sequenced by another group, GenBank Accession
           Number hypothetical protein in phoA 3' region
           [Escherichia coli str. K-12 substr. MG1655]
 gi|1786584|gb|AAC73488.1| diguanylate cyclase for cellulose, biofilm, motility regulation
           [Escherichia coli str. K-12 substr. MG1655]
 gi|85674526|dbj|BAE76166.1| predicted diguanylate cyclase [Escherichia coli str. K12 substr.
           W3110]
 gi|169756170|gb|ACA78869.1| diguanylate cyclase [Escherichia coli ATCC 8739]
 gi|169887807|gb|ACB01514.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170521622|gb|ACB19800.1| MASE2 domain/diguanylate cyclase [Escherichia coli SMS-3-5]
 gi|194422176|gb|EDX38178.1| MASE2 domain/diguanylate cyclase [Escherichia coli 101-1]
 gi|209910856|dbj|BAG75930.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218430764|emb|CAR11638.1| putative diguanylate cyclase [Escherichia coli UMN026]
 gi|227838697|gb|EEJ49163.1| possible diguanylate cyclase [Escherichia coli 83972]
 gi|238862236|gb|ACR64234.1| predicted diguanylate cyclase [Escherichia coli BW2952]
 gi|242376162|emb|CAQ30853.1| predicted diguanylate cyclase [Escherichia coli BL21(DE3)]
 gi|253325677|gb|ACT30279.1| diguanylate cyclase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972352|gb|ACT38023.1| predicted diguanylate cyclase [Escherichia coli B str. REL606]
 gi|253976561|gb|ACT42231.1| predicted diguanylate cyclase [Escherichia coli BL21(DE3)]
 gi|260450427|gb|ACX40849.1| diguanylate cyclase [Escherichia coli DH1]
 gi|281177556|dbj|BAI53886.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|284920192|emb|CBG33251.1| putative signal transduction protein [Escherichia coli 042]
 gi|291429356|gb|EFF02376.1| adrA [Escherichia coli FVEC1412]
 gi|291433694|gb|EFF06667.1| adrA [Escherichia coli B185]
 gi|291471706|gb|EFF14189.1| adrA [Escherichia coli B354]
 gi|298280227|gb|EFI21731.1| adrA [Escherichia coli FVEC1302]
 gi|300356088|gb|EFJ71958.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1]
 gi|300404649|gb|EFJ88187.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|300407531|gb|EFJ91069.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1]
 gi|300452469|gb|EFK16089.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1]
 gi|300461784|gb|EFK25277.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
 gi|300843026|gb|EFK70786.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|307552290|gb|ADN45065.1| putative transmembrane protein [Escherichia coli ABU 83972]
 gi|309700647|emb|CBI99943.1| putative signal transduction protein [Escherichia coli ETEC H10407]
 gi|315135068|dbj|BAJ42227.1| adrA [Escherichia coli DH1]
 gi|315256206|gb|EFU36174.1| diguanylate cyclase domain protein [Escherichia coli MS 85-1]
 gi|315294145|gb|EFU53496.1| diguanylate cyclase domain protein [Escherichia coli MS 153-1]
 gi|323938570|gb|EGB34819.1| diguanylate cyclase domain-containing protein [Escherichia coli
           E1520]
 gi|323963371|gb|EGB58933.1| diguanylate cyclase domain-containing protein [Escherichia coli
           H489]
 gi|331037698|gb|EGI09918.1| protein AdrA [Escherichia coli H736]
 gi|331051054|gb|EGI23106.1| protein AdrA [Escherichia coli M718]
 gi|331060180|gb|EGI32144.1| protein AdrA [Escherichia coli TA143]
          Length = 371

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367


>gi|315636644|ref|ZP_07891877.1| GGDEF/HAMP domain protein [Arcobacter butzleri JV22]
 gi|315479070|gb|EFU69770.1| GGDEF/HAMP domain protein [Arcobacter butzleri JV22]
          Length = 581

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 94/176 (53%), Gaps = 11/176 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           +EL +    + +LS  D L+ L N      SL         YN+  SI+  DIDYFK++N
Sbjct: 407 EELLVKNAELLKLSITDNLTKLYNRVKLDKSLQDEINRSQRYNKNFSIILLDIDYFKKVN 466

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           DNFGH +GD+V+   +  L         +GR GGEEF      +  ++A  +A+ +   I
Sbjct: 467 DNFGHQIGDEVLIESAQVLSKNIRNVDILGRWGGEEFLVICPETKIEDAIKVASHINAAI 526

Query: 204 ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +  +   ++ P+  ITIS G+A    H + +  II  AD+ALY AK+ GR++V+ F
Sbjct: 527 KLHK--FTTYPNT-ITISLGVATFSKHIKNVDDIILNADKALYQAKEEGRDKVIAF 579


>gi|301049579|ref|ZP_07196532.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1]
 gi|300298648|gb|EFJ55033.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1]
          Length = 374

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367


>gi|218700143|ref|YP_002407772.1| putative membrane-associated diguanylate cyclase (GGDEF domain)
           [Escherichia coli IAI39]
 gi|218370129|emb|CAR17917.1| putative membrane-associated diguanylate cyclase (GGDEF domain)
           [Escherichia coli IAI39]
          Length = 472

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254
           G+   C       +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|187935043|ref|YP_001887408.1| ggdef domain protein [Clostridium botulinum B str. Eklund 17B]
 gi|187723196|gb|ACD24417.1| ggdef domain protein [Clostridium botulinum B str. Eklund 17B]
          Length = 695

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 95/173 (54%), Gaps = 9/173 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKL------SIVFFDIDYFKQINDNFGH 148
           ++N +   ++ D L+G+ N +  ++     +N KL      SI+  D+DYFKQIND +GH
Sbjct: 522 TFNTVEHFAKYDSLTGMFNRNVILTQGERIFNNKLETKQTFSIIMIDVDYFKQINDRYGH 581

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD V+  +S  +         +GR GGEEF       + +EA  +A+ +RK +EN + 
Sbjct: 582 DIGDIVLRDISSIIKSEIRNTDSLGRYGGEEFLILLPNINLEEAKKIADRIRKSVENYKY 641

Query: 209 N-ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           + ++S     +T+S G+ E    E      + +AD+ALY+AK  GRNR + +S
Sbjct: 642 HYLTSEKHNRVTLSLGVYEFNKNEFDFFEGVKKADKALYMAKSLGRNRAIEYS 694


>gi|221065958|ref|ZP_03542063.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           KF-1]
 gi|220710981|gb|EED66349.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           KF-1]
          Length = 442

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 89/168 (52%), Gaps = 16/168 (9%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL+N   F  +L S   +       LS++  D+D+FKQ+ND+FGHP GD+V+   +
Sbjct: 278 DALTGLVNRRRFDEALESEWRRAHRSETALSLLLLDVDHFKQLNDSFGHPFGDEVLKCFA 337

Query: 160 DQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             L   V      V R GGEEFA    G+    AA LA  +R+ +E   +       + I
Sbjct: 338 GLLAHCVQRAGSLVSRYGGEEFAILLPGTGLSGAARLAEFIRQQVEALSLGNQQTGLVQI 397

Query: 219 TISAGIAERCHKEP-----ISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           T+S G+A  C   P      S++I  AD+ALY AK+ GRN  VC + +
Sbjct: 398 TVSVGVA--CASGPALDSSCSSLIDMADRALYEAKRKGRN-SVCLAGV 442


>gi|307946775|ref|ZP_07662110.1| signal transduction protein ggdef domain protein [Roseibium sp.
           TrichSKD4]
 gi|307770439|gb|EFO29665.1| signal transduction protein ggdef domain protein [Roseibium sp.
           TrichSKD4]
          Length = 250

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 101/186 (54%), Gaps = 4/186 (2%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKLSI 131
           II+  I++ +  ++ +I+K +  +  ++    + D L+G+L  S F+  +   +++  ++
Sbjct: 51  IIASLIAVPISIVALNIVKTVNKAVAKLEDFVKFDQLTGVLARSYFLEPVRQRFSDGGAL 110

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D D+FKQIND +GH VGD  +  +   L         VGR+GGEEFA    G  +QE
Sbjct: 111 FLVDADHFKQINDTYGHDVGDMALRLIGQTLNFNVRKSDLVGRVGGEEFAIFLKGVGDQE 170

Query: 192 AAILANDLRK-IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
               A  +R  I EN +  + +G  I++T+S GIA+      ++ I   AD+ LY AK +
Sbjct: 171 IVTRAEQIRTAIAENGK--VIAGHEINLTVSIGIAKIKKGSTLTLIFKEADENLYSAKNA 228

Query: 251 GRNRVV 256
           GRN+ V
Sbjct: 229 GRNQFV 234


>gi|301025468|ref|ZP_07189015.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
 gi|331656437|ref|ZP_08357399.1| protein AdrA [Escherichia coli TA206]
 gi|300395983|gb|EFJ79521.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
 gi|315299614|gb|EFU58862.1| diguanylate cyclase domain protein [Escherichia coli MS 16-3]
 gi|323976135|gb|EGB71228.1| diguanylate cyclase domain-containing protein [Escherichia coli
           TW10509]
 gi|331054685|gb|EGI26694.1| protein AdrA [Escherichia coli TA206]
          Length = 371

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVMLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367


>gi|119945517|ref|YP_943197.1| diguanylate cyclase [Psychromonas ingrahamii 37]
 gi|119864121|gb|ABM03598.1| diguanylate cyclase [Psychromonas ingrahamii 37]
          Length = 298

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 86/163 (52%), Gaps = 14/163 (8%)

Query: 102 QLSRIDCLSGLLNHSAF------ISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GLLN          ++   + N    +++F DID+FK++ND +GHP GDKV
Sbjct: 136 RLATTDPLTGLLNRRELQVQAQKVTHQAARNLSTFALLFIDIDFFKRVNDTYGHPAGDKV 195

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  L++ L         V R+GGEEFA       E+ A  LA  LRK IE   I+     
Sbjct: 196 LICLANILTQERRVTDIVARMGGEEFALLLPNIDEENAYKLAERLRKKIEKQTID----- 250

Query: 215 SIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I IT+S G  +  +  +     ++  ADQALY +K+ GRNR 
Sbjct: 251 HIKITVSIGLVVTRKNTQTNFDILLELADQALYESKEWGRNRT 293


>gi|37676120|ref|NP_936516.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37200661|dbj|BAC96486.1| GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 348

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 85/155 (54%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D LS L N  AF S L +     + LS++  DID+FK  NDN+GH  GD VI  ++ +L 
Sbjct: 192 DGLSTLYNRRAFDSDLKALVNAQQNLSLILLDIDHFKTFNDNYGHLFGDSVIRAIAKRLQ 251

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221
                 +   R GGEEFA      S + A   A  LR+ IE  ++ +  SG  + +I+ S
Sbjct: 252 TSCREGIAAYRFGGEEFALIVPNKSLRIARQYAESLRRTIEKLKVKDKRSGQQVENISAS 311

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+AE    E   ++I RAD+ LY AK+ GRNRV+
Sbjct: 312 FGVAELKPDETAESLIERADKLLYEAKQLGRNRVM 346


>gi|16264252|ref|NP_437044.1| hypothetical protein SM_b20523 [Sinorhizobium meliloti 1021]
 gi|15140377|emb|CAC48904.1| diguanylate cyclase signal peptide [Sinorhizobium meliloti 1021]
          Length = 402

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/195 (34%), Positives = 99/195 (50%), Gaps = 17/195 (8%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129
           +++I+   +++L     G ++K++ +   R S  S ID LSGL N   F S +      L
Sbjct: 196 AMLIVGTGVAML-----GVVVKDV-VDEARAS--SEIDALSGLCNRRGFSSRVAPLLRDL 247

Query: 130 S------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
           S      ++  DID FK +ND FGH  GD+VI   S  L  V       GR+GGEEFA  
Sbjct: 248 SDHDVGTLILADIDRFKLVNDTFGHHTGDEVIREFSHILADVMPHRAVAGRVGGEEFAIF 307

Query: 184 ALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
                  +A ++AN +R  +   +IN +  G  + +T S G++     E +   + RAD 
Sbjct: 308 LPRVGLADARVVANGIRSELAVKRINGLPEG--VAVTASFGVSAVAAGELLDAAMRRADN 365

Query: 243 ALYVAKKSGRNRVVC 257
           +LY AK  GRNRV C
Sbjct: 366 SLYAAKAGGRNRVEC 380


>gi|188492292|ref|ZP_02999562.1| AdrA protein [Escherichia coli 53638]
 gi|188487491|gb|EDU62594.1| AdrA protein [Escherichia coli 53638]
          Length = 236

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 41  LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 99

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 100 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 159

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 160 VIMSGTP-AESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 210

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 211 REWLKSADLALYKAKKAGRNRT 232


>gi|332715768|ref|YP_004443234.1| diguanylate cyclase with GAF sensor [Agrobacterium sp. H13-3]
 gi|325062453|gb|ADY66143.1| diguanylate cyclase with GAF sensor [Agrobacterium sp. H13-3]
          Length = 592

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 85/163 (52%), Gaps = 4/163 (2%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDK 153
            R+  ++R D L+GLLN  +   +L  + EK    L+ +  DID+FK+ ND FGH  GD 
Sbjct: 422 QRLVGMARQDALTGLLNRRSLDETLNRHIEKPTNSLACLMLDIDHFKRFNDRFGHDAGDA 481

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+ +++  L    G    + R GGEEF         ++A  +A  LR  +E +       
Sbjct: 482 VMQYVAQVLSEAVGDLGELFRFGGEEFTVLMPAGGIEDAIKVAEKLRHAVERAPFTYRGR 541

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               ITIS GIA       +S+++ RAD AL  AK++GRN+ V
Sbjct: 542 LLDSITISIGIATSPGAGTVSSVLERADAALLSAKQTGRNKWV 584


>gi|77456278|ref|YP_345783.1| putative diguanylate cyclase [Pseudomonas fluorescens Pf0-1]
 gi|77380281|gb|ABA71794.1| conserved GGDEF domain protein [Pseudomonas fluorescens Pf0-1]
          Length = 696

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 84/161 (52%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q + ID L+GL N +A+       I+    +   LS+   D+D+FK+INDN+GH  GDKV
Sbjct: 534 QKALIDPLTGLPNRAAWTERLEHEIAQWQQHGNTLSLAMLDLDHFKRINDNYGHLAGDKV 593

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  L        F+ R GGEEF      +     A L  +LR  IE    +   G 
Sbjct: 594 LKIIATVLRKRMRGNDFIARFGGEEFVLLLPATPPAVGAKLLENLRASIEACPFHF-KGE 652

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + ITIS G+A     E    ++ RADQALY AK +GRNRV
Sbjct: 653 RVTITISMGLAAFRPGEHSDLVLKRADQALYRAKNAGRNRV 693


>gi|229136232|ref|ZP_04264981.1| GGDEF domain protein [Bacillus cereus BDRD-ST196]
 gi|228647212|gb|EEL03298.1| GGDEF domain protein [Bacillus cereus BDRD-ST196]
          Length = 343

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 111/230 (48%), Gaps = 18/230 (7%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI---SGSILKE 92
           SIF   + F  N++   I + P Y    IL +++ +V + +   ++  Y+   S S + +
Sbjct: 118 SIFTKWIWF--NVYSLSILILPLY----ILFKDIYVVALYLVCCIVAAYVTFVSASYVLQ 171

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
               +  +   + ID L+ L N   F       I S    N+ L ++  DID+FK +ND 
Sbjct: 172 SNELFQTMKHYATIDALTNLGNVRKFDFEMNRHIGSKHMKNDSLCLLLIDIDHFKYVNDT 231

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GHP GD+V+  L   L+     P  V R GGEEFA             +   +R  +E 
Sbjct: 232 YGHPAGDEVLKQLGRILLENAPFPNLVFRKGGEEFALLLPKKRVAFGTRIGEQIRLAVEK 291

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               + +G  I IT+S G++E  +K+     I  AD ALY +K++GRN+V
Sbjct: 292 HSFQLQNGEKIKITVSVGLSE--YKKSPEQFIQSADDALYYSKRNGRNKV 339


>gi|258405556|ref|YP_003198298.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692]
 gi|257797783|gb|ACV68720.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692]
          Length = 387

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 91/172 (52%), Gaps = 15/172 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           E  +  NR+  L+R D L+ L N   F       I     Y   LS++  D+D+FK++ND
Sbjct: 207 ESTVQENRL--LARTDFLTDLPNRRGFFEAGAKEIRRAHRYGRPLSVLLLDLDHFKKVND 264

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGD V+A    +          + RLGGEEFA     +   EA+ +A  LR+ +E
Sbjct: 265 VYGHDVGDHVLAQFGQKCRGRLREHDLMARLGGEEFAVLLPETPVAEASQVAEGLRRFVE 324

Query: 205 NSQIN--ISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253
            S +   + +G    +T+S G+ E   +E  +S ++ R D ALY+AK++GRN
Sbjct: 325 GSSLAGVLEAG---EVTVSIGVCELAPQEDSLSEVLKRVDTALYMAKQAGRN 373


>gi|217077910|ref|YP_002335628.1| ggdef domain protein [Thermosipho africanus TCF52B]
 gi|217037765|gb|ACJ76287.1| ggdef domain protein [Thermosipho africanus TCF52B]
          Length = 1338

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 90/164 (54%), Gaps = 14/164 (8%)

Query: 106  IDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            +D L+ L     FI  L         +NEKLS+V  D+D+FK+IND +GH +GD+V+  +
Sbjct: 1179 LDPLTKLYTRYYFIEKLSQMFRRAIKFNEKLSVVMCDLDHFKKINDTYGHLIGDEVLKKI 1238

Query: 159  SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
            +  L         +GR GGEEF      SS ++A  +A  +RK IE     +   P   +
Sbjct: 1239 AQILRRNVRLTDVIGRYGGEEFIIFLPYSSSKQAYEIAERIRKKIE----KLDEFP-FKV 1293

Query: 219  TISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260
            T+S GIA     +  S   +I+ AD ALY AK++GRN+VV F++
Sbjct: 1294 TMSFGIASYPETKVNSPDELIHHADDALYKAKETGRNKVVMFNE 1337


>gi|149183994|ref|ZP_01862363.1| response regulator/sensory box protein/GGDEF domain protein
           [Bacillus sp. SG-1]
 gi|148848296|gb|EDL62577.1| response regulator/sensory box protein/GGDEF domain protein
           [Bacillus sp. SG-1]
          Length = 462

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 91/165 (55%), Gaps = 11/165 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           +++ +L+++D L+ L N  AF+      +E    +  DID+FK  ND +GH VGDKV+ +
Sbjct: 304 HQLIELAKMDSLTKLANREAFLELYNHNDEAGCFLLMDIDHFKLFNDQYGHLVGDKVLKY 363

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII--ENSQINISSGPS 215
           ++  L   F   +   RLGGEEF    L    +EA+I A+  +  +  E+SQ++    PS
Sbjct: 364 VAQLLKAQFRDAILT-RLGGEEF-GVFLNVDTEEASIRASRFQTSLKEESSQVD----PS 417

Query: 216 I--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV-VC 257
           I   +T+S GI      EP   +  RADQA+Y  K  GR+ + VC
Sbjct: 418 IEEEVTVSIGICRAYPGEPFERVYQRADQAMYKVKHEGRDSIHVC 462


>gi|331681777|ref|ZP_08382410.1| protein AdrA [Escherichia coli H299]
 gi|315616720|gb|EFU97337.1| diguanylate cyclase domain protein [Escherichia coli 3431]
 gi|323943191|gb|EGB39347.1| diguanylate cyclase domain-containing protein [Escherichia coli
           E482]
 gi|323972234|gb|EGB67444.1| diguanylate cyclase domain-containing protein [Escherichia coli
           TA007]
 gi|331080979|gb|EGI52144.1| protein AdrA [Escherichia coli H299]
          Length = 366

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 171 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 229

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 230 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 289

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 290 VIMSGTP-AESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 340

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 341 REWLKSADLALYKAKKAGRNRT 362


>gi|261212855|ref|ZP_05927139.1| GGDEF family protein [Vibrio sp. RC341]
 gi|260837920|gb|EEX64597.1| GGDEF family protein [Vibrio sp. RC341]
          Length = 327

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 91/180 (50%), Gaps = 15/180 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLN---------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142
           +++ +Y  I   S  D L+GLLN         H+  IS     + +L I   DID+FK I
Sbjct: 132 KIYRNYTVILHESERDKLTGLLNRRTLEDRLRHTFAISPTAEESHRLWIAMLDIDHFKAI 191

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+FGH +GD+++   + Q+   FG    + R GGEEF       +EQE     +  R  
Sbjct: 192 NDHFGHMIGDEILLMFAQQMQHFFGHSAQLFRFGGEEFVIIFASGNEQEINRQLDGFRH- 250

Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
               QI     P I  ++ SAG       + + TI+  AD+ALY AK+ GRN+V C+ ++
Sbjct: 251 ----QIRRHDFPRIGELSFSAGFCSLRPGDYLPTILDHADKALYYAKEHGRNQVHCYENL 306


>gi|74318711|ref|YP_316451.1| diguanylate cyclase [Thiobacillus denitrificans ATCC 25259]
 gi|74058206|gb|AAZ98646.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 570

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 8/164 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFIS-SLGSYNEKL------SIVFFDIDYFKQINDNFGHPVG 151
           R  QL+++D L+GL N  AF   +  +++  L      S++  DID+FKQIND +GH  G
Sbjct: 397 RAEQLAQLDPLTGLNNRRAFYGMTAAAWSNALRHAHATSVLLLDIDHFKQINDRYGHAEG 456

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++  L         + R GGEEF      +  ++AA+LA  LR  I    +   
Sbjct: 457 DAVLKTVAGALKQSVRQGDVLARWGGEEFIVFLPETGLRDAALLAERLRVSIAALSVTGR 516

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G ++ +T S G+AER     + ++I  AD  L+ +K+ GRNRV
Sbjct: 517 VG-TMAVTASIGVAERADHATLDSLIAAADACLFASKQQGRNRV 559


>gi|297562365|ref|YP_003681339.1| diguanylate cyclase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296846813|gb|ADH68833.1| diguanylate cyclase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 425

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 108/216 (50%), Gaps = 16/216 (7%)

Query: 55  LTPFYGLEYILVENLSL-------VIISITISLLLGYISGSILKELFISYNRISQLSRID 107
           L P +  E ++V+ + L       ++  +++ LL+  +   +L +  + Y ++   +R D
Sbjct: 174 LRPMWDREALIVDAVELCVGVTVAILAHLSLFLLVIAVPPVLLLQRSLMYQQLQMAARTD 233

Query: 108 CLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
             +GLLN   +       I+   S   + +++  DID+FK++NDN GH  GD+V+  ++ 
Sbjct: 234 PKTGLLNAPTWEQEASVEIARARSSRGRAAVLIIDIDHFKRVNDNHGHLFGDQVLLGVAT 293

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            +         +GR GGEEF     GS   EA   A  LR  +   +I +   P + ITI
Sbjct: 294 TIAQQLRQSDLLGRFGGEEFVVLLPGSDTAEAWRAAERLRSQVGRMEIAVDDVP-VSITI 352

Query: 221 SAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S G A    H   +  ++  AD ALY AK++GRNRV
Sbjct: 353 SIGAAVIGDHGNDLVELLTAADLALYRAKETGRNRV 388


>gi|224373318|ref|YP_002607690.1| diguanylate cyclase [Nautilia profundicola AmH]
 gi|223588594|gb|ACM92330.1| diguanylate cyclase [Nautilia profundicola AmH]
          Length = 463

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 83/166 (50%), Gaps = 11/166 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
            + ++S  D L+ + N      SL S       Y   LSI+FFDID FK+IND +GH VG
Sbjct: 298 ELKKISFYDSLTDIYNRYKIDLSLKSQIELAKKYKIPLSIIFFDIDDFKKINDTYGHKVG 357

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  LS  +          GR GGEEF      +    A  +AN L+K IE     I 
Sbjct: 358 DEVLIELSKLIKRNIRQTDIFGRWGGEEFIIILPNTDLTTATHIANKLKKAIEEHSFPII 417

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                H+T S G+ E    + ++T+  RAD  LY AK  G+NRV+ 
Sbjct: 418 K----HLTCSFGVTELKDNDSLNTLTVRADSFLYEAKNKGKNRVIS 459


>gi|152990385|ref|YP_001356107.1| hypothetical protein NIS_0636 [Nitratiruptor sp. SB155-2]
 gi|151422246|dbj|BAF69750.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 486

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 13/171 (7%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           IS  +  +++ +D L+GL N   F       I     +   LS++ FDID+FK+IND +G
Sbjct: 319 ISRIKFEEMATVDKLTGLFNRHKFQEIAEIEIKRSHRHKRPLSVILFDIDHFKKINDTYG 378

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD V+  L+  +        +  R GGEEF      + E++A  +A  LRK +E+  
Sbjct: 379 HDIGDVVLRELAKIIKQNIRKYDYAIRWGGEEFLILTPETDEKQAFAMAEKLRKAVES-- 436

Query: 208 INISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               + P +  +TIS G+A     E I   I +AD ALY +K  GRN+   
Sbjct: 437 ---HTFPEVGKVTISLGVASVDPNESIDQAIKKADNALYGSKLGGRNKTTV 484


>gi|283834300|ref|ZP_06354041.1| YaiC/YhcK/ArdA family protein [Citrobacter youngae ATCC 29220]
 gi|291069828|gb|EFE07937.1| YaiC/YhcK/ArdA family protein [Citrobacter youngae ATCC 29220]
          Length = 366

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 94/194 (48%), Gaps = 11/194 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121
           LSL ++ I   LL  ++S   +  L     R+  +S  D ++G+ N   +         +
Sbjct: 171 LSLPVLVI-YPLLFAWVSYQAITRLAEHKRRLQVMSTRDGMTGVYNRRHWELLLRNEFDN 229

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              Y    +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 230 CRRYQRDATLLIIDIDHFKSINDTWGHDVGDQAIVALTRQLQMTLRGSDVIGRFGGDEFA 289

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRA 240
               G+    A    + + + +  SQ+ +S  P + + IS G+A      E     +  A
Sbjct: 290 VIMCGTPATSAIAAMSRVHERL--SQLRLSCAPQVALRISVGVAPLTSETEHYREWLKSA 347

Query: 241 DQALYVAKKSGRNR 254
           D ALY AK SGRNR
Sbjct: 348 DMALYKAKNSGRNR 361


>gi|307154898|ref|YP_003890282.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
 gi|306985126|gb|ADN17007.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
          Length = 785

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 92/189 (48%), Gaps = 16/189 (8%)

Query: 84  YISGSILKELFIS--YNRISQ------LSRIDCLSGLLNHSAFISSL-------GSYNEK 128
           Y+   I+    I+  +NR+ +      L+ +D L+GL N   F+  L           + 
Sbjct: 596 YVDKPIIGPELIARIHNRLERTQMRRRLAEVDSLTGLSNRRKFVEDLTRLLKLAQRQKQP 655

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L  V  D+D+FKQ+ND +GH +GD+V+  L   L   F     +GR GGEEFA    G +
Sbjct: 656 LCYVLIDLDHFKQVNDKYGHDMGDRVLRQLGKLLKRQFRCEDLIGRWGGEEFALGLYGMN 715

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVA 247
           + +A     D+ +     +  ++      +T SAGIA           +YR AD ALY A
Sbjct: 716 KSQAISRLKDILEQWRQEEFRVTDNHCFCVTFSAGIAMYPTDGAELQNLYRFADVALYRA 775

Query: 248 KKSGRNRVV 256
           KK GRN+V+
Sbjct: 776 KKQGRNQVI 784


>gi|242238670|ref|YP_002986851.1| diguanylate cyclase with beta propeller sensor [Dickeya dadantii
           Ech703]
 gi|242130727|gb|ACS85029.1| diguanylate cyclase with beta propeller sensor [Dickeya dadantii
           Ech703]
          Length = 985

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 59/165 (35%), Positives = 89/165 (53%), Gaps = 10/165 (6%)

Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+ L N   F   L         ++  L++  FDID+FKQIND + H VGDKV+ 
Sbjct: 812 AREDQLTKLDNRRVFDEQLIRCFEDSQRHDYPLTLAIFDIDHFKQINDRWSHVVGDKVLQ 871

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPS 215
            ++D L       M + R GGEEF       + ++AA +   LR  +  +    I+ G S
Sbjct: 872 TIADILRNFHQDAMLIARWGGEEFTLLFPRMTVEQAAAVCESLRLALTKADYQTIADGLS 931

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +T S G+ +    +    +I +AD ALY+AK++GRN+VVC+SD
Sbjct: 932 --VTASFGLCDSFTAKDSQELIRQADHALYLAKQTGRNKVVCWSD 974


>gi|330974006|gb|EGH74072.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 796

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 93/184 (50%), Gaps = 18/184 (9%)

Query: 87  GSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
           GS+L   F+S      R+ Q    LS  D L+G  N   F       +  +  +   LSI
Sbjct: 611 GSVLWHGFVSDITDLKRVEQELRVLSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSI 670

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK+IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +
Sbjct: 671 IMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGARGAQ 730

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A  LA  LR+ + N  I    G    +T S GIA     E I  ++ RAD  +Y AK++G
Sbjct: 731 AYQLALSLREELRNQAIE---GVDQVVTGSFGIASWREGEGIDEMLLRADSGVYAAKQAG 787

Query: 252 RNRV 255
           R+RV
Sbjct: 788 RDRV 791


>gi|271502688|ref|YP_003335714.1| PAS/PAC and GAF sensor-containing diguanylate cyclase [Dickeya
           dadantii Ech586]
 gi|270346243|gb|ACZ79008.1| diguanylate cyclase with PAS/PAC and GAF sensors [Dickeya dadantii
           Ech586]
          Length = 771

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 88/168 (52%), Gaps = 11/168 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           ++ +++  D L+G+ N  A+I        ++ +  ++   DID+FK++ND +GH VGD  
Sbjct: 603 KLLEMANTDPLTGIHNRRAYILEAEKCYRNHEKNTALAIIDIDFFKKVNDQYGHHVGDVA 662

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           I  L++ +     T  FV RLGGEEF      ++      + N +R  +EN+   +  G 
Sbjct: 663 ICRLAEIITSKLRTDDFVARLGGEEFGLIMHHANPDNVDTIINGIRTEVENTLFTV-DGY 721

Query: 215 SIHITISAGIAERCH------KEPISTIIYRADQALYVAKKSGRNRVV 256
           S H TIS G     H      K+   + + RAD ALY AK +GRNRVV
Sbjct: 722 SFHFTISIGATFIKHRHVQNLKDNFESDMKRADDALYEAKNAGRNRVV 769


>gi|191173526|ref|ZP_03035053.1| MASE2 domain/diguanylate cyclase [Escherichia coli F11]
 gi|190906235|gb|EDV65847.1| MASE2 domain/diguanylate cyclase [Escherichia coli F11]
 gi|323191493|gb|EFZ76755.1| diguanylate cyclase domain protein [Escherichia coli RN587/1]
          Length = 366

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 171 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 229

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 230 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 289

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 290 VIMSGTP-AESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 340

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 341 REWLKSADLALYKAKKAGRNRT 362


>gi|213968312|ref|ZP_03396456.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
           T1]
 gi|301383444|ref|ZP_07231862.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302060299|ref|ZP_07251840.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
           K40]
 gi|302129936|ref|ZP_07255926.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213926950|gb|EEB60501.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
           T1]
          Length = 425

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 90/165 (54%), Gaps = 11/165 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +++  D L+GL N  A        I++     +  S +  DID+FK +ND +GHP 
Sbjct: 255 QKLLEIAHSDTLTGLDNRRAAEHTLERLINTARMAGKPFSFIICDIDHFKSVNDRYGHPA 314

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  ++  L           R GGEEF      SS ++AA LA  +RK +E+ +I  
Sbjct: 315 GDSVLKSVAAILKHRIRAFDVAARWGGEEFLILVPDSSLKQAAELAERVRKGVESLEIP- 373

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +GP   +TIS G+AE    E  +++I RAD+ LY AK+ GRNRV
Sbjct: 374 EAGP---VTISLGVAELSPGETAASLIQRADKVLYQAKRLGRNRV 415


>gi|300936368|ref|ZP_07151296.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
 gi|300458474|gb|EFK21967.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
          Length = 371

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367


>gi|253995396|ref|YP_003047460.1| diguanylate cyclase [Methylotenera mobilis JLW8]
 gi|253982075|gb|ACT46933.1| diguanylate cyclase [Methylotenera mobilis JLW8]
          Length = 395

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 11/175 (6%)

Query: 100 ISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q++  D L+G +N            +      E L+I+  DID+FK IND +GHP GD
Sbjct: 221 VYQMASRDALTGAMNRRRIEEEAVRLRARCIRTGEPLAIMMIDIDFFKSINDRYGHPAGD 280

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KV+  ++D          +  R GGEEF      ++E EA  LA  LR  +  ++  ++ 
Sbjct: 281 KVLRAIADIAQKSIRAEDYFARYGGEEFCMLLTSTTESEALDLAERLR--LAFAEFTLTL 338

Query: 213 GP-SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           G   ++IT+S G+A+        + ++  AD+ALY AK++GRNRV+ +S +   T
Sbjct: 339 GKEQLNITVSIGVADSSMVGLEFADMVTAADKALYCAKENGRNRVITYSSMGAGT 393


>gi|28868554|ref|NP_791173.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28851792|gb|AAO54868.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 425

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 90/165 (54%), Gaps = 11/165 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +++  D L+GL N  A        I++     +  S +  DID+FK +ND +GHP 
Sbjct: 255 QKLLEIAHSDTLTGLDNRRAAEHTLERLINTARMAGKPFSFIICDIDHFKSVNDRYGHPA 314

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  ++  L           R GGEEF      SS ++AA LA  +RK +E+ +I  
Sbjct: 315 GDSVLKSVAAILKHRIRAFDVAARWGGEEFLILVPDSSLKQAAELAERVRKGVESLEIP- 373

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +GP   +TIS G+AE    E  +++I RAD+ LY AK+ GRNRV
Sbjct: 374 EAGP---VTISLGVAELSPGETAASLIQRADKVLYQAKRLGRNRV 415


>gi|300997431|ref|ZP_07181771.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1]
 gi|300304250|gb|EFJ58770.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1]
          Length = 371

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTP-AESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367


>gi|296134291|ref|YP_003641538.1| diguanylate cyclase with GAF sensor [Thermincola sp. JR]
 gi|296032869|gb|ADG83637.1| diguanylate cyclase with GAF sensor [Thermincola potens JR]
          Length = 574

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 11/175 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y +I +L+  D L+ + NH  F             Y  K S++  DIDYFK+ ND FGH 
Sbjct: 392 YKKIEKLAITDGLTKVYNHRYFYKKFEEEYQRSQRYGCKFSVIMIDIDYFKRFNDEFGHK 451

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  ++  +         V R GGEEFA     +   +A I+A  +RK I  +   
Sbjct: 452 AGDTALFTVAKIIKTNTRNIDTVARYGGEEFAILLPETDSGDAKIVAERIRKAISETVFR 511

Query: 210 ISSG-PSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           I+   P + +T+S G++      K+P   ++  ADQALY +K+ G+NRV  +S +
Sbjct: 512 IADDKPPVGVTVSIGVSSYPADTKDP-QQVVELADQALYYSKEHGKNRVTVWSQM 565


>gi|167625671|ref|YP_001675965.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167355693|gb|ABZ78306.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 295

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 85/166 (51%), Gaps = 13/166 (7%)

Query: 102 QLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L++ D L+GL N        S  I  L  +   LSI+  D+D+FK +NDN+GH +GDK 
Sbjct: 134 KLAKTDVLTGLANRLELDSVLSYEIERLKRFQHPLSIIMLDLDHFKTVNDNYGHLLGDKC 193

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  +   F     VGR GGEEF      +    A  LA   R++IE         P
Sbjct: 194 LINIAKMMKNNFRLIDTVGRWGGEEFLIICPETDFNGAIKLAEKFRRLIEEHIF-----P 248

Query: 215 SI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +  IT S G+      +   T++ RAD+ALY AKK+GRNRV  F 
Sbjct: 249 EVKRITGSLGVTSFIEGDTHETLVNRADKALYKAKKAGRNRVEAFE 294


>gi|24375935|ref|NP_719978.1| GGDEF domain-containing protein [Shewanella oneidensis MR-1]
 gi|24350920|gb|AAN57422.1|AE015878_4 GGDEF domain protein [Shewanella oneidensis MR-1]
          Length = 485

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 106/210 (50%), Gaps = 23/210 (10%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLL 113
           L  F+G       NL+L ++ +TI +L  +IS   L      Y R +  ++  D L+G  
Sbjct: 288 LNTFWG-------NLALSLV-VTIGIL--FISNMTLGR----YQRKLEIMASTDKLTGAA 333

Query: 114 NHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N   F        +K       +SI+  DID+FK++ND++GH VGD V+  +++ L    
Sbjct: 334 NRQVFEEYFHQALDKAKLSQTSISILLIDIDHFKKVNDSYGHSVGDLVLKTVTNLLRSQL 393

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                + R GGEEF           AA LA   R  I   ++ ++ G  I IT+S G+AE
Sbjct: 394 KPQDILCRWGGEEFLVLLPEMDLSRAAELAERFRDSISQRELKVN-GVHIAITVSIGVAE 452

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               EP   +I RAD ALY AK++GRN+VV
Sbjct: 453 YQKLEPAEDLIKRADLALYQAKEAGRNQVV 482


>gi|320197180|gb|EFW71797.1| Protein YaiC [Escherichia coli WV_060327]
          Length = 371

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367


>gi|46198710|ref|YP_004377.1| hypothetical protein TTC0402 [Thermus thermophilus HB27]
 gi|46196333|gb|AAS80750.1| hypothetical conserved protein [Thermus thermophilus HB27]
          Length = 367

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 95/205 (46%), Gaps = 21/205 (10%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F  L Y+    L  V ++  I LL      +  +E++       + +  D L+ L N  A
Sbjct: 171 FRMLGYVATAFLGQVTVAALILLL------ARFREMYGQTRFWREQALTDTLTRLPNRRA 224

Query: 118 F-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           F       +S    Y    S+V  D+D FKQIND  GH  GD+V+  ++  LV       
Sbjct: 225 FELALTRELSRAERYGTPFSLVLVDLDRFKQINDTLGHDHGDEVLRRVARFLVEGVRRED 284

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            V R GGEEFA     +   +A  LA  LR+ +E+  +         +T S G+AE    
Sbjct: 285 VVARWGGEEFALLLPSTRASDALRLAERLRQALEDLDLG--------VTASFGVAEYLPG 336

Query: 231 EPISTIIYRADQALYVAKKSGRNRV 255
           E    +  RADQALY AK+ GRNRV
Sbjct: 337 ESEEALFRRADQALYRAKERGRNRV 361


>gi|27367989|ref|NP_763516.1| GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|320158262|ref|YP_004190640.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
 gi|27359562|gb|AAO08506.1|AE016813_258 GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|319933574|gb|ADV88437.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
          Length = 338

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 85/155 (54%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D LS L N  AF S L +     + LS++  DID+FK  NDN+GH  GD VI  ++ +L 
Sbjct: 182 DGLSTLYNRRAFDSDLKALVNAQQNLSLILLDIDHFKTFNDNYGHLFGDSVIRAIAKRLQ 241

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221
                 +   R GGEEFA      S + A   A  LR+ IE  ++ +  SG  + +I+ S
Sbjct: 242 TSCREGIAAYRFGGEEFALIVPNKSLRIARQYAESLRRTIEKLKVKDKRSGQQVENISAS 301

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+AE    E   ++I RAD+ LY AK+ GRNRV+
Sbjct: 302 FGVAELKPDETAESLIERADKLLYEAKQLGRNRVM 336


>gi|50122296|ref|YP_051463.1| putative signaling membrane protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612822|emb|CAG76272.1| putative signaling membrane protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 532

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 90/170 (52%), Gaps = 15/170 (8%)

Query: 97  YNRISQLS---RIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPV 150
           + RI +LS     D L+GLLN      ++    S + +++ +  DID+FK++ND +GH +
Sbjct: 356 HKRIGKLSLQAHTDPLTGLLNRRGIYENIELILSKSNQVAAIVIDIDHFKRVNDTYGHNI 415

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VI  L+  +         + R GGEEF +    +  ++AA +A  LRK +E   + I
Sbjct: 416 GDDVIKLLAKNIKQSSRGSDLICRTGGEEFLSLLPDTDMKQAAEIAERLRKKVEKMPLPI 475

Query: 211 SSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVC 257
                 +ITIS G+   C     E I +++  AD ALY AK  GRNRVV 
Sbjct: 476 PE----YITISLGVT--CFIPGTEQIDSVLKTADDALYQAKHEGRNRVVT 519


>gi|119773670|ref|YP_926410.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119766170|gb|ABL98740.1| response regulator receiver protein [Shewanella amazonensis SB2B]
          Length = 392

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 9/171 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + QL+ ID L+G  N  A               + +L ++  DID+FK+IND +GH  GD
Sbjct: 218 LRQLTTIDPLTGWFNRRALNDIAVREFERSARTSSELGLLVLDIDHFKKINDTYGHVDGD 277

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  +++   ++     ++ R GGEEF     GS  +    LAN LR  I++  + +  
Sbjct: 278 EALKHVTNTCALLLRGYDYLFRFGGEEFVILLPGSDHECTRKLANRLRLKIQSEPVTLGQ 337

Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              + +TIS G+A+R  + +    I+ RAD ALY AK+SGR+RV   + +E
Sbjct: 338 -DRVALTISIGVAQRRERDQSWLQILERADSALYHAKQSGRDRVAFHNGLE 387


>gi|311697298|gb|ADQ00170.1| protein containing diguanylate cyclase, predicted domains [marine
           bacterium HP15]
          Length = 690

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 92/170 (54%), Gaps = 12/170 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           ++Q +  D L+GL+N           I     Y   ++++  DID+FK IND FGH VGD
Sbjct: 526 LTQKAHFDQLTGLVNRRFMDELLFNEIERCRRYRNPMTVLLLDIDHFKSINDTFGHDVGD 585

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  ++ +L     +   V R GGEEF      ++   A ++  ++RK +E  +  ++ 
Sbjct: 586 RVLEAVASRLKGAVRSVDSVARWGGEEFIVMLAETNLSSALVVGENIRKTVERGEYALNR 645

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
                +T+S G+++    + + +++ RAD ALY AK+ GRN+VV  SD E
Sbjct: 646 ----PVTVSIGVSQFKKDDTVDSLLKRADIALYDAKERGRNQVVA-SDPE 690


>gi|75675624|ref|YP_318045.1| response regulator PleD [Nitrobacter winogradskyi Nb-255]
 gi|74420494|gb|ABA04693.1| response regulator receiver modulated diguanylate cyclase
           [Nitrobacter winogradskyi Nb-255]
          Length = 457

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 85/165 (51%), Gaps = 9/165 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N     S L +  E+       L+++  DIDYFK INDN+GH  GD V
Sbjct: 290 EMAVTDGLTGLHNRRYMESHLTTLAEQASLRGQSLALMMLDIDYFKAINDNYGHDAGDDV 349

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   + ++           R GGEEF      +    A ++A  LR+ I     +I  G 
Sbjct: 350 LREFALRIRKAIRGIDLACRYGGEEFVIVMPETDLHVAGMVAERLRRAIAGEPFSIHKGT 409

Query: 215 S-IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
             I +TIS G++    K EPIS ++ RAD ALY AK  GRNRVV 
Sbjct: 410 KLIKVTISIGLSTLERKGEPISDVVKRADVALYRAKHDGRNRVVA 454


>gi|322831728|ref|YP_004211755.1| diguanylate cyclase [Rahnella sp. Y9602]
 gi|321166929|gb|ADW72628.1| diguanylate cyclase [Rahnella sp. Y9602]
          Length = 520

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 95/185 (51%), Gaps = 16/185 (8%)

Query: 84  YISGSILKELFIS-----YNRISQLS---RIDCLSGLLNHSAFISSLGSY---NEKLSIV 132
           Y   S LK + +      + RI QLS     D ++GLLN   F  ++      + +++++
Sbjct: 338 YYEASKLKTVMLQGIRLLHQRIEQLSTEAHTDPMTGLLNRRGFYEAVDKQLKESSRVAVI 397

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK++ND FGH VGD+VI  L+  ++        + R+GGEEF     G+S  +A
Sbjct: 398 TLDIDHFKKVNDTFGHDVGDRVITQLARHILSNSREGDLLCRMGGEEFLLLLPGASLTQA 457

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSG 251
             LA  LRK +E  Q   +      +TIS G+      K  I   +  AD+ALY AK  G
Sbjct: 458 TGLAERLRKQVEMQQFEGAG----QVTISLGVTLFYPGKANIDGALKTADKALYQAKNKG 513

Query: 252 RNRVV 256
           RN VV
Sbjct: 514 RNCVV 518


>gi|296448104|ref|ZP_06890005.1| diguanylate cyclase [Methylosinus trichosporium OB3b]
 gi|296254369|gb|EFH01495.1| diguanylate cyclase [Methylosinus trichosporium OB3b]
          Length = 368

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 87/174 (50%), Gaps = 8/174 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           + EL  +     +L+  D L+ +     F ++L       G    +LS++  DID+FK+I
Sbjct: 190 IDELRATLAETQELNVRDSLTQVYTRRYFDTTLERVVREAGGSGGELSLIMADIDHFKKI 249

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GHP+GD+V+   +  +     T   V R GGEEFA     +   +A +LA  +R  
Sbjct: 250 NDTHGHPIGDEVLKNFARTMTSHVETKDTVARYGGEEFAIILPATGAAQARLLAERIRSE 309

Query: 203 IENSQINISSG-PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            E  +  I  G P   IT S G+A     E  + +I RAD  LYV+K  GRNRV
Sbjct: 310 FETKKWAIKGGRPIGRITASFGVARLQPGEGPAGLIQRADAKLYVSKSGGRNRV 363


>gi|218698710|ref|YP_002406339.1| diguanylate cyclase AdrA [Escherichia coli IAI39]
 gi|218368696|emb|CAR16436.1| putative diguanylate cyclase [Escherichia coli IAI39]
          Length = 371

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367


>gi|192292883|ref|YP_001993488.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
 gi|192286632|gb|ACF03013.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
          Length = 345

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 96/180 (53%), Gaps = 9/180 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFK 140
           S + ++  +   + +L+  D ++G+ N   F+       S    Y   +S +  DIDYFK
Sbjct: 145 SDVTDIVRNAEELERLATTDGMTGVYNRRHFLTLADREWSRARRYERPMSFLMIDIDYFK 204

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND FGH VGD++I  L+            + RLGGEEFA     +   +A ++A  LR
Sbjct: 205 AINDGFGHQVGDEMIVHLARLARDCKRDCDVLARLGGEEFALLLPETDLAQAEVVAERLR 264

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +  + + ++S  +I  T+S G+A      + +S ++  ADQALY AK +GRNRV+C +
Sbjct: 265 REVAGNALVVASH-AIPATVSIGVATALPSMKDVSDLMKAADQALYDAKHAGRNRVICRA 323


>gi|301647301|ref|ZP_07247116.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|301074547|gb|EFK89353.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
          Length = 370

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367


>gi|260899788|ref|ZP_05908183.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|308110403|gb|EFO47943.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 337

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 89/155 (57%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D LS L N  AF + L    + N+ ++++  DID+FK  NDN+GH  GD V+  ++ +L 
Sbjct: 181 DGLSNLYNRRAFDTDLSMLINANQAMTLILLDIDHFKAFNDNYGHLFGDTVLKAIARRLQ 240

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH-ITIS 221
                 +   R GGEEFA      S + A   A+ LR++IE  ++ +  SG  +H IT S
Sbjct: 241 QSCRDGVSAYRFGGEEFALIVPNKSLRIARQYADTLRRMIEKLRVRDKRSGTQVHSITAS 300

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+AE    + + +++ +AD+ LY AK+ GRNRV+
Sbjct: 301 FGVAEFEVGDTVDSLVNKADKQLYEAKQLGRNRVM 335


>gi|163760508|ref|ZP_02167589.1| periplasmic sensor diguanylate cyclase [Hoeflea phototrophica
           DFL-43]
 gi|162282123|gb|EDQ32413.1| periplasmic sensor diguanylate cyclase [Hoeflea phototrophica
           DFL-43]
          Length = 442

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 8/165 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S+++R D L+GL N  AF ++L         + E+ +++  DID+FKQ+ND  GH  GD
Sbjct: 264 LSEMARRDELTGLANRRAFEATLPDMMGRAKRFEEQFTLLAIDIDHFKQVNDTHGHAAGD 323

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  ++  ++        V R+GGEEFA     +    A + A  +R+ +E + +++ +
Sbjct: 324 EVLRAVARTMMDTMRDGDRVFRVGGEEFAVLLPRTDGAPARLAAERIRQAVEMAPVSLKA 383

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              I +T+S G+A        S ++  AD ALY AK  GRNR++ 
Sbjct: 384 -TEIAVTVSIGMASTLDFPEKSDLLEAADAALYRAKHEGRNRIIV 427


>gi|148545092|ref|YP_001272462.1| diguanylate cyclase [Lactobacillus reuteri DSM 20016]
 gi|227364247|ref|ZP_03848342.1| diguanylate cyclase [Lactobacillus reuteri MM2-3]
 gi|325683449|ref|ZP_08162965.1| diguanylate cyclase [Lactobacillus reuteri MM4-1A]
 gi|148532126|gb|ABQ84125.1| diguanylate cyclase [Lactobacillus reuteri DSM 20016]
 gi|227070729|gb|EEI09057.1| diguanylate cyclase [Lactobacillus reuteri MM2-3]
 gi|324977799|gb|EGC14750.1| diguanylate cyclase [Lactobacillus reuteri MM4-1A]
          Length = 369

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 87/167 (52%), Gaps = 9/167 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKV 154
           + + S  D L+GLLN+ A    I+ L + NE  +IV    DID+FK+IND +GH VG++V
Sbjct: 183 LEKESERDDLTGLLNYRALSQEINRLANNNEIHNIVIGALDIDHFKKINDTYGHFVGNEV 242

Query: 155 IAFLS----DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           + + S    +Q+   F    +V R GGEEF       S +E   L   + K   N  I  
Sbjct: 243 LNYFSTVFREQIHSAFPKHGYVYRFGGEEFTIVVSNHSLEEVYQLLQSIEKFFNNKSIVT 302

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             G  + I+ S  + +R + E + T + RAD+ LY  K +GR  +V 
Sbjct: 303 KEGMKLTISFSCSLTDRLNDELLDTTLKRADKMLYSVKNNGRGWIVT 349


>gi|28900057|ref|NP_799712.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|260362250|ref|ZP_05775229.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
 gi|260880632|ref|ZP_05892987.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|260896587|ref|ZP_05905083.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|28808340|dbj|BAC61545.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086820|gb|EFO36515.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|308091814|gb|EFO41509.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|308115619|gb|EFO53159.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
 gi|328470040|gb|EGF40951.1| GGDEF family protein [Vibrio parahaemolyticus 10329]
          Length = 337

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 89/155 (57%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D LS L N  AF + L    + N+ ++++  DID+FK  NDN+GH  GD V+  ++ +L 
Sbjct: 181 DGLSNLYNRRAFDTDLSMLINANQAMTLILLDIDHFKAFNDNYGHLFGDTVLKAIARRLQ 240

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH-ITIS 221
                 +   R GGEEFA      S + A   A+ LR++IE  ++ +  SG  +H IT S
Sbjct: 241 QSCRDGVSAYRFGGEEFALIVPNKSLRIARQYADTLRRMIEKLRVRDKRSGTQVHSITAS 300

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+AE    + + +++ +AD+ LY AK+ GRNRV+
Sbjct: 301 FGVAEFEVGDTVDSLVNKADKQLYEAKQLGRNRVM 335


>gi|310767351|gb|ADP12301.1| conserved uncharacterized protein YneF [Erwinia sp. Ejp617]
          Length = 464

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 91/167 (54%), Gaps = 11/167 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIV----FFDIDYFKQINDNFGHPV 150
           RI++ +  D L+G L  S   + L S     N +   +      DID FK IND +GH  
Sbjct: 293 RITRRADYDFLTGALTRSGLSTKLDSLVTGRNRQQGFIGAALVIDIDRFKDINDTWGHAA 352

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+A  ++ L         V R+GGEEF     G ++  +++LAN LR+ +EN++I I
Sbjct: 353 GDYVLAKTAECLREGLSPSTLVCRMGGEEFLILIQGMTQPRSSLLANRLRQNVENNKI-I 411

Query: 211 SSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRV 255
            +G  + +T+S GI+     +   +   I RAD+ LY+AK SGRN+V
Sbjct: 412 FNGHDLSVTVSIGISSLNISNVNSLDESIMRADEQLYIAKSSGRNQV 458


>gi|170751898|ref|YP_001758158.1| diguanylate cyclase [Methylobacterium radiotolerans JCM 2831]
 gi|170658420|gb|ACB27475.1| diguanylate cyclase [Methylobacterium radiotolerans JCM 2831]
          Length = 384

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 97/189 (51%), Gaps = 7/189 (3%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NE 127
           L  +++  S+   +   +++KE      RI+  +  D L+G+ N  AF  +  +    + 
Sbjct: 190 LCFVTLMFSIASAFTFMALVKERAEREQRIA--ASTDALTGVRNRRAFAQAAEAAIARHG 247

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
             +++ FD+D FK +ND FGH VGD V+         +      +GRLGGEEFA      
Sbjct: 248 DAALLLFDLDRFKAVNDRFGHGVGDAVLVGFCTMATTLLPREALLGRLGGEEFACLLPDV 307

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
           S  EA   A +LR+    +Q+ I   P++ +++S GIA+         ++ RAD ALYVA
Sbjct: 308 SPAEALARAEELRQTF--AQLGIPELPALRVSVSIGIAQARAGIAFDALMRRADTALYVA 365

Query: 248 KKSGRNRVV 256
           K  GR+RV 
Sbjct: 366 KNGGRDRVA 374


>gi|184154425|ref|YP_001842766.1| hypothetical protein LAR_1770 [Lactobacillus reuteri JCM 1112]
 gi|183225769|dbj|BAG26286.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
          Length = 387

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 85/162 (52%), Gaps = 9/162 (5%)

Query: 104 SRIDCLSGLLNHSAF---ISSLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFL 158
           S  D L+GLLN+ A    I+ L + NE  +IV    DID+FK+IND +GH VG++V+ + 
Sbjct: 205 SERDDLTGLLNYRALSQEINRLANNNEIHNIVIGALDIDHFKKINDTYGHFVGNEVLNYF 264

Query: 159 S----DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           S    +Q+   F    +V R GGEEF       S +E   L   + K   N  I    G 
Sbjct: 265 STVFREQIHSAFPKHGYVYRFGGEEFTIVVSNHSLEEVYQLLQSIEKFFNNKSIVTKEGM 324

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            + I+ S  + +R + E + T + RAD+ LY  K +GR  +V
Sbjct: 325 KLTISFSCSLTDRLNDELLDTTLKRADKMLYSVKNNGRGWIV 366


>gi|254826937|ref|ZP_05231624.1| GGDEF domain-containing protein [Listeria monocytogenes FSL N3-165]
 gi|258599317|gb|EEW12642.1| GGDEF domain-containing protein [Listeria monocytogenes FSL N3-165]
          Length = 357

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 102/197 (51%), Gaps = 17/197 (8%)

Query: 76  ITISLLLGYISGSIL------KELFISYNRISQLSRIDCLSGLLNHSAFISS-LGSYNEK 128
           + I+L++G +S  ++      K+LF  Y + S L  +  LS +      I+  + + + +
Sbjct: 164 VLIALVIGAVSAGLMSNMIKSKQLFQKYEQDSTLDYLTKLSNVRQFDEKINHVMDAGSRQ 223

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAA 184
           ++++  DIDYFK IND +GH  GD ++     QL V+       G    R GGEEF+   
Sbjct: 224 VTLMLIDIDYFKNINDTYGHDAGDAIL----KQLAVILKESTTDGSEAFRNGGEEFSIVL 279

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQA 243
           L  S +E   +A  +RK  E     I  G  + ITIS G++        S  +++ AD+A
Sbjct: 280 LDCSIEEGNKVAEQVRKETEEHDFVIPGGQIVKITISVGVSSSKDGANTSEGLFKSADEA 339

Query: 244 LYVAKKSGRNRVVCFSD 260
           LY AK +GRNR VC +D
Sbjct: 340 LYKAKLTGRNR-VCIAD 355


>gi|134291731|ref|YP_001115500.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
 gi|134134920|gb|ABO59245.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
          Length = 387

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 118/237 (49%), Gaps = 15/237 (6%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLS---LVIISITISLLLGYISGSILKELF 94
           F+A   ++  +F     +   +G+ ++     S   ++ + + I  L    +G ++    
Sbjct: 151 FVAAAAYLGALFHVTRAVAAAFGMPHMAFPQPSPWNVLFLGLAIVTLPCMSTGMVMLAHD 210

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEK---LSIVFFDIDYFKQINDNFG 147
               ++ Q + ID L+G+L   AF++     L    EK   LSI   DID FK +ND FG
Sbjct: 211 RLVRKMEQFASIDELTGVLMRRAFMARASVLLREAPEKGKPLSIAILDIDKFKAVNDGFG 270

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD+++  ++  +     +    GRLGGEEFA   + +   +AA L N+LR  +E   
Sbjct: 271 HAVGDRILRHVTSVVSARLRSCDLFGRLGGEEFAIVFVDAGMADAAALTNELRLAVER-- 328

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
              S    +  T SAG+      + ++  + RAD ALY+AK +GRNRVV  S+++  
Sbjct: 329 ---SPNEGVRCTFSAGVECVTPGDTLAGALARADAALYMAKATGRNRVVTASEVDER 382


>gi|24111763|ref|NP_706273.1| diguanylate cyclase AdrA [Shigella flexneri 2a str. 301]
 gi|30061881|ref|NP_836052.1| diguanylate cyclase AdrA [Shigella flexneri 2a str. 2457T]
 gi|24050549|gb|AAN41980.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30040125|gb|AAP15858.1| hypothetical protein S0329 [Shigella flexneri 2a str. 2457T]
 gi|281599717|gb|ADA72701.1| MASE2 domain/diguanylate cyclase [Shigella flexneri 2002017]
 gi|313647000|gb|EFS11457.1| diguanylate cyclase domain protein [Shigella flexneri 2a str.
           2457T]
 gi|333008111|gb|EGK27587.1| diguanylate cyclase domain protein [Shigella flexneri K-218]
          Length = 371

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II +   L+ G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPII-VVYPLMFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTPA-ESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367


>gi|294011060|ref|YP_003544520.1| putative GAF sensor diguanylate cyclase [Sphingobium japonicum
           UT26S]
 gi|292674390|dbj|BAI95908.1| putative GAF sensor diguanylate cyclase [Sphingobium japonicum
           UT26S]
          Length = 331

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 94/176 (53%), Gaps = 12/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           L  L +    + +++  D L+G L   AF+  +         +   +S++ FDID+FK+I
Sbjct: 149 LAALVVEQLELRRIAERDHLTGALTRRAFLIEMNRAIALFERHQRPVSLLLFDIDHFKRI 208

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND  GHP GD+VI  ++ +L      P   +GRLGGEEF      ++E++AA  A    +
Sbjct: 209 NDTHGHPAGDQVIRGIA-RLCTSLQRPSDSLGRLGGEEFGILLPETAEEDAASAAQRFCE 267

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256
            I  ++  I   P + +T+S G+AE     P   + +  AD ALY AK+SGRNRV 
Sbjct: 268 AIAAAE--IPGPPPLCVTVSFGVAELRGDWPTGESWLAVADMALYEAKRSGRNRVA 321


>gi|259908752|ref|YP_002649108.1| hypothetical protein YneF [Erwinia pyrifoliae Ep1/96]
 gi|224964374|emb|CAX55883.1| conserved uncharacterized protein YneF [Erwinia pyrifoliae Ep1/96]
 gi|283478726|emb|CAY74642.1| Uncharacterized protein yneF [Erwinia pyrifoliae DSM 12163]
          Length = 464

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 91/167 (54%), Gaps = 11/167 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIV----FFDIDYFKQINDNFGHPV 150
           RI++ +  D L+G L  S   + L S     N +   +      DID FK IND +GH  
Sbjct: 293 RITRRADYDFLTGALTRSGLSTKLDSLVTGRNRQQGFIGAALVIDIDRFKDINDTWGHAA 352

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+A  ++ L         V R+GGEEF     G ++  +++LAN LR+ +EN++I I
Sbjct: 353 GDYVLAKTAECLREGLSPSTLVCRMGGEEFLILIQGMTQPRSSLLANRLRQNVENNKI-I 411

Query: 211 SSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRV 255
            +G  + +T+S GI+     +   +   I RAD+ LY+AK SGRN+V
Sbjct: 412 FNGHDLSVTVSIGISSLNISNVNSLDESIMRADEQLYIAKSSGRNQV 458


>gi|110833576|ref|YP_692435.1| GGDEF domain-containing protein [Alcanivorax borkumensis SK2]
 gi|110646687|emb|CAL16163.1| GGDEF domain protein [Alcanivorax borkumensis SK2]
          Length = 367

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 95/173 (54%), Gaps = 23/173 (13%)

Query: 98  NRISQLSRIDCLSG---------LLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
            RI +++  D L+G         LLN++   S+ G+Y  +L++V+ D+D+FK+ ND +GH
Sbjct: 199 ERIHEMAVKDELTGFYRRRHAMELLNNACGQSARGAY--QLAVVYLDLDHFKRTNDQYGH 256

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD V+   +D             RLGGEEF    L  ++QE A      R ++E   +
Sbjct: 257 RMGDAVLQRFADVARRHLTKQDLAARLGGEEFMLV-LPVTDQEEA------RNLVEGILM 309

Query: 209 NISS-----GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++ S      P + +T+S G+A R   E  + +I RAD ALY AK++GR++++
Sbjct: 310 SMRSQRFKDAPGLMVTVSGGLAMRADGETPAQLIKRADLALYRAKETGRDKLI 362


>gi|56697678|ref|YP_168048.1| GGDEF domain-containing protein [Ruegeria pomeroyi DSS-3]
 gi|56679415|gb|AAV96081.1| GGDEF domain protein [Ruegeria pomeroyi DSS-3]
          Length = 249

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 2/187 (1%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI 131
           +I+ + ++ L  +     L E+     +++ L+RID ++ L N +  +  L    E+  +
Sbjct: 44  IIVPLLVAPLATHWGAERLLEIDKLNQQLAHLNRIDQMTQLYNRACLLEKLEQEPEEAGM 103

Query: 132 VFF-DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +   DID+FKQIND +GH VGD VI  ++  L           R GGEEF         +
Sbjct: 104 ILIADIDHFKQINDTYGHDVGDLVIIEVARVLQRSSLPEGIAARFGGEEFVIYVPRLDLE 163

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
            A   A  +R+ +E   + I  G  +  TIS GI  R  +E +  ++ RAD+ALY AK  
Sbjct: 164 AAEFRAEAIRQAVEAQSVMID-GRKLSCTISIGIEIRQMQENVGDVLKRADEALYRAKAQ 222

Query: 251 GRNRVVC 257
           GRN+VV 
Sbjct: 223 GRNQVVA 229


>gi|313682625|ref|YP_004060363.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM
           16994]
 gi|313155485|gb|ADR34163.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM
           16994]
          Length = 520

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 88/166 (53%), Gaps = 13/166 (7%)

Query: 98  NRISQLSRIDCLSGLLNH---SAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPV 150
           N +++ +  D ++G  N    + ++ S   +    N  ++++ FDID FK +ND FGH  
Sbjct: 356 NELAKAAATDPMTGAANRLQCNRWLKSATDHARQSNSSVALIMFDIDDFKHVNDTFGHNA 415

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-N 209
           GD V+   ++ +  V  +     R GGEEF    + +  +    LA  LR  IE +Q  N
Sbjct: 416 GDAVLINTAEIVHSVIRSHDMFARWGGEEFVILQINTPYEGTIALAERLRTKIEQTQFQN 475

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           I      HITIS G+A+   +E I T + +AD A+Y AKK G+NRV
Sbjct: 476 IG-----HITISLGVAQFDKEESIETFVKKADDAMYQAKKEGKNRV 516


>gi|307133289|ref|YP_003885305.1| sensory box protein [Dickeya dadantii 3937]
 gi|306530818|gb|ADN00749.1| Sensory box protein [Dickeya dadantii 3937]
          Length = 773

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 85/164 (51%), Gaps = 11/164 (6%)

Query: 103 LSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ++  D L+G+ N  A+I        ++ +  ++   DID+FK++ND +GH VGD  I  L
Sbjct: 609 MANTDVLTGIHNRRAYILETEKCYRNHEKNTALAIIDIDFFKKVNDQYGHHVGDVAICRL 668

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           ++ +     T  FV RLGGEEF      ++      + N +R  +EN+   +  G S H 
Sbjct: 669 AEIITSKLRTDDFVARLGGEEFGLIVHNANLDNVDAIMNGIRTEVENTLFTV-DGYSFHF 727

Query: 219 TISAGIAERCH------KEPISTIIYRADQALYVAKKSGRNRVV 256
           T+S G     H      K+   + + RAD ALY AK +GRNRVV
Sbjct: 728 TVSIGATFIKHRNVQSLKDSFESDMKRADDALYEAKNAGRNRVV 771


>gi|114049240|ref|YP_739790.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113890682|gb|ABI44733.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 485

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/211 (34%), Positives = 106/211 (50%), Gaps = 23/211 (10%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLL 113
           L  F+G       NL L ++ +TI +LL  IS   L      Y R +  ++  D L+G  
Sbjct: 288 LNTFWG-------NLGLSLL-VTIGVLL--ISNMTLGR----YQRKLEIMASTDKLTGAA 333

Query: 114 NHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N   F        EK       +SI+  DID+FK++ND++GH +GD V+  +++ L    
Sbjct: 334 NRQVFEEYFHQALEKAKLSKQAISILLVDIDHFKKVNDSYGHSIGDLVLKTVTNLLRSQL 393

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                + R GGEEF           AA LA   R +I   ++ ++ G  I IT+S G+AE
Sbjct: 394 KEQDVLCRWGGEEFIVLLPEMDLSHAAELAEHFRDLIFQRELKVN-GVHIAITVSIGVAE 452

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               EP   +I RAD ALY AK++GRN+VV 
Sbjct: 453 YQKLEPAEDLIKRADLALYQAKEAGRNQVVL 483


>gi|254229234|ref|ZP_04922653.1| fog: ggdef domain containing protein [Vibrio sp. Ex25]
 gi|262395584|ref|YP_003287437.1| putative two-component response regulator and GGDEF family protein
           YeaJ [Vibrio sp. Ex25]
 gi|151938319|gb|EDN57158.1| fog: ggdef domain containing protein [Vibrio sp. Ex25]
 gi|262339178|gb|ACY52972.1| putative two-component response regulator and GGDEF family protein
           YeaJ [Vibrio sp. Ex25]
          Length = 453

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 88/156 (56%), Gaps = 7/156 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           N +S +++ D L+GLLN   F      +    E  SI+  D +  K+IND +GH VGD+V
Sbjct: 300 NALSDVTQ-DDLTGLLNRRVFKEERFKHRMEVEPYSIIAIDGNRIKKINDRYGHHVGDEV 358

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           I  ++D +  VF    ++ R GG+EF     G S  +A++LA  LR +++++++N     
Sbjct: 359 IVIIADSMRKVFRNSDYLVRTGGDEFIVILPGCSMSKASMLAKKLRGVVKHNRLNT---L 415

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
            I I++S G+A R   E +  +I RAD+ LY  KK 
Sbjct: 416 DIEISVSTGVAVREEDETLQEVIVRADEELYEMKKQ 451


>gi|330830265|ref|YP_004393217.1| diguanylate cyclase/phosphodiesterase domain 1 [Aeromonas veronii
           B565]
 gi|328805401|gb|AEB50600.1| Diguanylate cyclase/phosphodiesterase domain 1 [Aeromonas veronii
           B565]
          Length = 377

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 81/151 (53%), Gaps = 9/151 (5%)

Query: 107 DCLSGLLNHSAFISSL--GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+GLLN   F+  L  G   ++ ++V  D+D FKQIND  GH VGD+V+  +   L  
Sbjct: 230 DPLTGLLNRRGFMERLARGRPAQQGALVVLDLDDFKQINDRHGHEVGDRVLEQVGLALRE 289

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           + G  +   R GGEEF      ++ +EA      LR  +  S++       IHIT+S GI
Sbjct: 290 LEG--VLASRFGGEEFVLLFRHATAEEAIARCQSLRVQLAASEVE-----GIHITVSMGI 342

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A    +    ++  RAD ALY AK+ G+NRV
Sbjct: 343 AHWQGEWHFDSLFSRADDALYRAKREGKNRV 373


>gi|254447576|ref|ZP_05061042.1| response regulator PleD [gamma proteobacterium HTCC5015]
 gi|198262919|gb|EDY87198.1| response regulator PleD [gamma proteobacterium HTCC5015]
          Length = 261

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 97/197 (49%), Gaps = 17/197 (8%)

Query: 75  SITISLLLGYISGSILKELFISYN--------RISQLSRIDCLSGLLNHSAFISSLGSYN 126
           ++  +L++ +  G+ L    I  N        ++ +L+  D L+GL N   F      ++
Sbjct: 48  AVPAALIIPFFVGTPLVHNLIKSNIKLLRVQKQLEELANKDALTGLYNRQYFFDHANEWD 107

Query: 127 EK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
           ++        S++  D+D+FK IND FGHPVGD+V+  +S+ +           R GGEE
Sbjct: 108 KRCRENSGHFSLLMLDVDHFKSINDRFGHPVGDRVLQRVSNVIKGFMRQEDMCARYGGEE 167

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F      ++   A  +A  +R  +E+     + G S+ ++I  G       + + T+I R
Sbjct: 168 FICLLPDTNAAGAKAVAERIRLGMEHQAFLKARGLSLSVSI--GATTMSANDNLETLIER 225

Query: 240 ADQALYVAKKSGRNRVV 256
           ADQALY AK  GRNR V
Sbjct: 226 ADQALYEAKDGGRNRAV 242


>gi|312962636|ref|ZP_07777125.1| YaiC/YhcK/ArdA family protein [Pseudomonas fluorescens WH6]
 gi|311283011|gb|EFQ61603.1| YaiC/YhcK/ArdA family protein [Pseudomonas fluorescens WH6]
          Length = 365

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 89/170 (52%), Gaps = 22/170 (12%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S LSRID L+GLLNH ++   L          + + +I   DID+FK+IND  GH VGD
Sbjct: 193 LSALSRIDSLTGLLNHGSWKDLLHLKFHQCQQQHSQATIALIDIDHFKRINDTHGHIVGD 252

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII---ENSQIN 209
            V+  LS +L          GR GG+EF        ++EAA     +R+I     N QI 
Sbjct: 253 AVLRQLSLELRRNLRDDDLAGRYGGDEFCVILPQMRQEEAARRMERMREIFSNYRNPQI- 311

Query: 210 ISSGPSIHITISAGIAERCHKEPI----STIIYRADQALYVAKKSGRNRV 255
               P + +++S G+A+    +P     +  +  AD+ALY AK +GRNRV
Sbjct: 312 ----PELRVSLSIGLAD---YQPFFSDAAMWLNAADRALYAAKDTGRNRV 354


>gi|304391595|ref|ZP_07373537.1| response regulator PleD [Ahrensia sp. R2A130]
 gi|303295824|gb|EFL90182.1| response regulator PleD [Ahrensia sp. R2A130]
          Length = 457

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 94/175 (53%), Gaps = 9/175 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           +L  S +   +++  D L+GL N   F + +          N+ LS++  DID+FK +ND
Sbjct: 280 QLRASVHNTMEMAVTDGLTGLNNRRYFDNHMQGLLQKANLANKPLSLIIMDIDHFKHVND 339

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGD V+   +++++          R GGEEF  A   +  + A ++A+ +R+ + 
Sbjct: 340 TYGHQVGDDVLKIFAERVLKNVRNKDLACRFGGEEFIVAMPDTDRELAFVVADRMRREVS 399

Query: 205 NSQINISSG-PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                + +G   I IT+SAG+A      E + T++ RAD+ LY AK+ GRN+VV 
Sbjct: 400 AHPFIVDNGRQQISITVSAGVAGIAGPNETVETMLKRADERLYDAKRRGRNQVVA 454


>gi|224369383|ref|YP_002603547.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223692100|gb|ACN15383.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 668

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 97/172 (56%), Gaps = 13/172 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           +Y    + S  D L+GLLN          AF  ++   N+ LS+V  D+D+FK+ NDNFG
Sbjct: 497 AYKDAKKASLRDGLTGLLNRIAIDGLLEKAFRGAVEGKND-LSLVMIDVDFFKKFNDNFG 555

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-S 206
           H  GD ++  +++ L  +      VGR GGEEF      +   +A + A  +R+ IE+  
Sbjct: 556 HQSGDSILKLIANTLKKLSRPFDHVGRYGGEEFIVVLTNTGLSQAIVYAERIRREIEHLG 615

Query: 207 QINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            + ++  P + +T+SAG++  E+  K     +I +AD+ALY AK++GRN+VV
Sbjct: 616 VLLVNRFPGLALTVSAGVSGYEKNVKNR-EVLIAKADKALYQAKETGRNKVV 666


>gi|192290385|ref|YP_001990990.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
 gi|192284134|gb|ACF00515.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
          Length = 284

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 119/237 (50%), Gaps = 20/237 (8%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI---ISITISLLLGYISGSILKELFI 95
           I T+IF+    +  +G      +E   V   SLV+   +S T+S  + Y S  ++++L  
Sbjct: 28  IVTIIFL----ISDLGTDLHATVEVGAVVKASLVVALGVSTTLSGAMAYRSARLMRQLTS 83

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           +   + ++SR D L+GLLN   F       ++      +++  +  DID FK IND++GH
Sbjct: 84  TRAELMRMSRTDPLTGLLNRRGFDDAAATVLAEAADAGQRVVALMCDIDRFKAINDHYGH 143

Query: 149 PVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
            +GD+V+A +   ++  F  P  M + R GGEEFA   +G S+ +A   A  L ++    
Sbjct: 144 NIGDRVLAEIG-GILRDFAAPRGMLIARHGGEEFAGLMVGVSDAQANDYAMTLCRMCATD 202

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                 G  + +T+S G+A     E +  ++ RAD ALY AK  GRN VV     E 
Sbjct: 203 V--PCDGRLVPVTMSFGVAAYAGGE-LPALMRRADLALYRAKDLGRNCVVQLEGSEG 256


>gi|153010975|ref|YP_001372189.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188]
 gi|151562863|gb|ABS16360.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188]
          Length = 473

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 75/126 (59%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS++  DID+FK IND +GH  GD V+  +++ ++ +     FV R GGEEF  A + + 
Sbjct: 338 LSVLMIDIDHFKNINDTYGHSSGDAVLQQVAEAILSLCRPSDFVFRYGGEEFLVALVEAD 397

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           E +A  +A +LRK I    +N+  G    +T+S G+A        S ++  AD+ALY AK
Sbjct: 398 ENKAFTIAEELRKQIAQQPLNLPDGARQSVTLSIGVAAFNGHPDYSHLVNAADRALYRAK 457

Query: 249 KSGRNR 254
           ++GRNR
Sbjct: 458 QAGRNR 463


>gi|153212472|ref|ZP_01948241.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|124116509|gb|EAY35329.1| GGDEF family protein [Vibrio cholerae 1587]
          Length = 469

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 94/170 (55%), Gaps = 6/170 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
           ++L  +  ++S L++ D L+G+ N  +F   L +   +   L+++ FDID FK IND FG
Sbjct: 297 QQLEEANQKLSYLAKTDSLTGIANRRSFFEYLEAEQTRSGSLTLMVFDIDDFKTINDRFG 356

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD  I F+   +     +  +  R+GGEEFA  A G + +E+  LA  + + +   +
Sbjct: 357 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 416

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             +++  S+ +TIS G A   H   P S  ++ AD  +Y  K++G+N+VV
Sbjct: 417 WVVNAQYSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 464


>gi|70729261|ref|YP_258998.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas fluorescens Pf-5]
 gi|68343560|gb|AAY91166.1| CHASE domain/sensory box-containing nucleotide cyclase, putative
           [Pseudomonas fluorescens Pf-5]
          Length = 799

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 64/181 (35%), Positives = 95/181 (52%), Gaps = 13/181 (7%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFD 135
           GYIS   + +L      +  LS  D L+G+ N   F   L +   +L       +++  D
Sbjct: 621 GYISD--ISDLKRVEEELRALSVTDSLTGIHNRRYFQERLQAEMHRLERGGGVMAVIMLD 678

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK+IND +GH VGD+V+  L +++           RLGGEEF      +S Q+A IL
Sbjct: 679 IDHFKRINDQYGHGVGDQVLRGLCERIGRRLRRIDVFCRLGGEEFMVLCPDTSGQQALIL 738

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A +L   + +S I    GP   +T S GIA     E    ++ RAD A+Y AK++GR+RV
Sbjct: 739 AQELWHGVRSSPI----GPVESVTASFGIASWRAGEGADELLLRADSAVYAAKQAGRDRV 794

Query: 256 V 256
           +
Sbjct: 795 L 795


>gi|332764257|gb|EGJ94493.1| diguanylate cyclase domain protein [Shigella flexneri K-671]
 gi|333022038|gb|EGK41283.1| diguanylate cyclase domain protein [Shigella flexneri K-304]
          Length = 371

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II +   L+ G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPII-VVYPLMFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTPA-ESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367


>gi|320107961|ref|YP_004183551.1| diguanylate cyclase [Terriglobus saanensis SP1PR4]
 gi|319926482|gb|ADV83557.1| diguanylate cyclase [Terriglobus saanensis SP1PR4]
          Length = 636

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 88/173 (50%), Gaps = 9/173 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQIND 144
           EL     RI   +  D L+GL NH   +  L      S  EK  LS++  D+D+FK++ND
Sbjct: 456 ELMRESERIRHYAEHDGLTGLWNHRIIVQRLRQELERSRREKVPLSVILIDVDHFKKVND 515

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGHPVGD V+  LS   +    T  + GR GGEEF     G S + A   A +LR  ++
Sbjct: 516 TFGHPVGDLVLKELSAIFMSSLRTHDWGGRYGGEEFLLILPGCSIEGALSRAEELRLAVQ 575

Query: 205 NSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +++I +     + +T S G+A           +I   D ALY AK SGRN VV
Sbjct: 576 SARI-MDGETMLEVTASFGVASNFTSNHEYEAVIRVVDTALYRAKSSGRNCVV 627


>gi|229513275|ref|ZP_04402740.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae TMA 21]
 gi|229349685|gb|EEO14640.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae TMA 21]
          Length = 469

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 94/170 (55%), Gaps = 6/170 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
           ++L  +  ++S L++ D L+G+ N  +F   L +   +   L+++ FDID FK IND FG
Sbjct: 297 QQLEEANQKLSYLAKTDSLTGIANRRSFFEYLEAEQTRSGSLTLMVFDIDDFKTINDRFG 356

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD  I F+   +     +  +  R+GGEEFA  A G + +E+  LA  + + +   +
Sbjct: 357 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 416

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             +++  S+ +TIS G A   H   P S  ++ AD  +Y  K++G+N+VV
Sbjct: 417 WVVNAQYSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 464


>gi|332761771|gb|EGJ92050.1| diguanylate cyclase domain protein [Shigella flexneri 2747-71]
 gi|332768488|gb|EGJ98671.1| diguanylate cyclase domain protein [Shigella flexneri 2930-71]
          Length = 366

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II +   L+ G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 171 LSLPII-VVYPLMFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 229

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 230 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 289

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 290 VIMSGTP-AESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 340

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 341 REWLKSADLALYKAKKAGRNRT 362


>gi|304310934|ref|YP_003810532.1| hypothetical protein HDN1F_12960 [gamma proteobacterium HdN1]
 gi|301796667|emb|CBL44879.1| hypothetical protein HDN1F_12960 [gamma proteobacterium HdN1]
          Length = 363

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 99/196 (50%), Gaps = 20/196 (10%)

Query: 88  SILKELFISYN---------RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSI 131
           S L+++ I++N         R+  LS +D L+G+ N     +++            +LS 
Sbjct: 155 SFLQQVLIAHNNAQLAEANTRLKVLSEVDSLTGIYNRRFLDNAMDEEWRRARRMGYRLSF 214

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQ 190
           +  DID+FK  ND +GH VGD+ I  ++ +L  +F  P   V R GGEEFA    G    
Sbjct: 215 LMCDIDFFKLYNDTYGHLVGDQCIRKVAQRLQSLFHRPGDVVARYGGEEFAVLLPGLEAS 274

Query: 191 EAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPIST--IIYRADQALYVA 247
           EA  LA  +   I+   I  S+      +TIS G+A+    E   T  +   AD+ LY+A
Sbjct: 275 EAHALAKVVCAEIQALAIPHSTSTVADVVTISIGVADILPNEESETRDLCRMADEGLYLA 334

Query: 248 KKSGRNRVVCFSDIEN 263
           K+SGRNR  CF D E+
Sbjct: 335 KRSGRNRAECFGDAES 350


>gi|258404195|ref|YP_003196937.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
 gi|257796422|gb|ACV67359.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
          Length = 550

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 86/164 (52%), Gaps = 9/164 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +LSR D L+GL N   FI       S     +E+L++   DID+FK +ND +GH VGD
Sbjct: 374 LKRLSRTDELTGLFNRRHFITLMHKEFSRARRTHERLTLAMLDIDHFKDVNDKYGHDVGD 433

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  L   L           R GGEEFA     +   +A  +   LR +   S+++ + 
Sbjct: 434 HVLQHLGRILREDVRPYDIAARYGGEEFAICFPDTDLSQADHICERLRTLCAASEVSRNG 493

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G +I  T+S G++E R   E +  ++  AD ALY AK +GRNR+
Sbjct: 494 G-TIGFTVSFGLSELRPEHEDLDGLLKSADNALYAAKANGRNRI 536


>gi|194432614|ref|ZP_03064900.1| MASE2 domain/diguanylate cyclase [Shigella dysenteriae 1012]
 gi|194419175|gb|EDX35258.1| MASE2 domain/diguanylate cyclase [Shigella dysenteriae 1012]
 gi|332085990|gb|EGI91154.1| diguanylate cyclase domain protein [Shigella dysenteriae 155-74]
          Length = 320

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 106/201 (52%), Gaps = 25/201 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 125 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 183

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 184 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 243

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 244 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 294

Query: 239 R-----ADQALYVAKKSGRNR 254
           R     AD ALY AKK+GRNR
Sbjct: 295 REWLKSADLALYKAKKAGRNR 315


>gi|223040451|ref|ZP_03610725.1| ggdef domain protein [Campylobacter rectus RM3267]
 gi|222878301|gb|EEF13408.1| ggdef domain protein [Campylobacter rectus RM3267]
          Length = 519

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 82/160 (51%), Gaps = 8/160 (5%)

Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S+ D L+      A I  L         Y+    + FFDID+FK IND +GH  GD V+A
Sbjct: 354 SKEDFLTKTGTKKALIEELEQMEQKYNRYDSDYGVCFFDIDHFKLINDTYGHEAGDVVLA 413

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +   L        FVGR GGEEF      ++  +A   A+ +R+I++NS+  +  G  I
Sbjct: 414 AIGKMLRKYSRQVDFVGRYGGEEFVILLPETTLADAIKFADKMREIVQNSKF-MYKGERI 472

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +T S G+A R      S  I  AD+ LY AK+ GRN+V+
Sbjct: 473 DVTASCGVAIRSENTGSSVTIEEADKMLYQAKQGGRNKVM 512


>gi|149188413|ref|ZP_01866706.1| GGDEF family protein [Vibrio shilonii AK1]
 gi|148837631|gb|EDL54575.1| GGDEF family protein [Vibrio shilonii AK1]
          Length = 340

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 94/169 (55%), Gaps = 11/169 (6%)

Query: 101 SQLSRIDC------LSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVG 151
           SQL+++ C      L+ L N  AF + L  +    + +S++F DID+FK+ ND FGH  G
Sbjct: 172 SQLAKVQCNALFDSLTSLYNRGAFDADLNMFCDAKQPMSLIFLDIDHFKKFNDEFGHLFG 231

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           D ++  +S +L       +   R GGEEFA      S + A  +A+ LR  IE   I + 
Sbjct: 232 DTILKGISQRLKQACRGGITAYRFGGEEFALIIPNKSLRVARQMADALRLAIEKMTIKDR 291

Query: 211 SSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +G  + +IT S G+AE    +   +++ RAD+ LY AK++GRNRV+ F
Sbjct: 292 KNGSKVGNITASFGVAEFTAGDTYISLVDRADKMLYDAKRAGRNRVMPF 340


>gi|83643401|ref|YP_431836.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631444|gb|ABC27411.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 373

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 108/208 (51%), Gaps = 16/208 (7%)

Query: 62  EYILVENLSLVIISITISLLLGYISG--SILK----ELFISYNRISQLSRIDCLSGLLNH 115
           E++L+  L +V+  +  +L+ G+IS   + L+    +L  +  +IS ++  D L+GL   
Sbjct: 158 EFVLLTALFMVMAQM--ALIGGFISKLRASLRVKNHQLNEALEKISVMASTDELTGLCTR 215

Query: 116 SAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
              +  L +   +       LS+   DID+FK+IND++GH  GD V+  ++  +  +  +
Sbjct: 216 RELMKQLSNEFSRCRRSSGALSLCLLDIDHFKRINDSYGHQAGDAVLKKVAQTMQSLVRS 275

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
              +GR GGEEF      +    A I A  LR+ + +        P   +TIS G AE  
Sbjct: 276 IDCLGRYGGEEFLLILPQTPLDGAFITAERLRRAVMDIPFP-EVAPEFRVTISLGAAELE 334

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256
             E + T+I R D+ALY AK +GRNRVV
Sbjct: 335 EGEAMETLISRVDKALYAAKGAGRNRVV 362


>gi|304320054|ref|YP_003853697.1| putative diguanylate cyclase (GGDEF) [Parvularcula bermudensis
           HTCC2503]
 gi|303298957|gb|ADM08556.1| putative diguanylate cyclase (GGDEF) [Parvularcula bermudensis
           HTCC2503]
          Length = 459

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 99/196 (50%), Gaps = 15/196 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRIS-----QLSRIDCLSGLLNHSAFISSLGSYNEK-- 128
           I +  +   +   + ++ ++ + R S     +L+ +D L+G+ N     S L     K  
Sbjct: 260 IDVQEMAARVRTQLRRKWYVEHLRDSLSQSLELAVLDGLTGIYNRRFLQSQLPRLLTKAV 319

Query: 129 -----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                LS++  D+D+FK +ND +GH VGD V+  +   L           R GGEEF   
Sbjct: 320 KRELPLSVMILDVDFFKAVNDTYGHDVGDAVLREIGHMLHFSLRGMDLACRYGGEEFVVV 379

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRA 240
              +  + + ++A  LRK I   QI+  +G S  +T+S G+A       +E  ++++ RA
Sbjct: 380 LPETPREGSEVIAERLRKEIAGLQIDAGNGQSFSVTVSIGMAFFDGTSREETPASLLKRA 439

Query: 241 DQALYVAKKSGRNRVV 256
           D+ALY AK+ GRNRV+
Sbjct: 440 DEALYRAKEGGRNRVI 455


>gi|291618368|ref|YP_003521110.1| YdaM [Pantoea ananatis LMG 20103]
 gi|291153398|gb|ADD77982.1| YdaM [Pantoea ananatis LMG 20103]
          Length = 533

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 87/168 (51%), Gaps = 8/168 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+S  ++ D L+ LLN     + L  Y    +  +++  DID+FK +NDN+GH VGD+VI
Sbjct: 368 RLSSEAQTDSLTLLLNRRGLNAVLDYYQTMRQPFAVLALDIDHFKSVNDNWGHDVGDRVI 427

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L         V R GGEEF      +  +EA   A  +R  I ++ I       
Sbjct: 428 RQVAQTLRQSARQSDVVCRNGGEEFLMLLPNTPLKEAEATAERIRISIADNAIEAVG--- 484

Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            HITIS G+AE    + P+ + + RAD ALY AK SGRN  V    ++
Sbjct: 485 -HITISIGVAEWDARRPPLESSLKRADDALYQAKNSGRNCTVVAKRVK 531


>gi|115523504|ref|YP_780415.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
 gi|115517451|gb|ABJ05435.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
          Length = 232

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 82/166 (49%), Gaps = 10/166 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I  L+  D L+G+ NH  F   L +         E LS +  D+D+FK INDNFGH  G
Sbjct: 69  QIVALTLTDSLTGVGNHRRFEQDLTTEIKRFERTGEPLSALMVDLDHFKTINDNFGHDAG 128

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+A   D L+V         R+GGEEF      ++  EA   A  LR      +I+  
Sbjct: 129 DQVLATFGDLLLVQLRATEIATRIGGEEFVVLLPHTALDEAKATAERLRAATAELRIH-- 186

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            G  + +T S G+A     E     + R DQALY AK +GRN VV 
Sbjct: 187 -GLPLDVTASFGVATMAPGEDRIAFMRRLDQALYRAKHAGRNCVVA 231


>gi|13474053|ref|NP_105621.1| hypothetical protein mll4839 [Mesorhizobium loti MAFF303099]
 gi|14024805|dbj|BAB51407.1| mll4839 [Mesorhizobium loti MAFF303099]
          Length = 253

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 96/166 (57%), Gaps = 3/166 (1%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-GSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+S+ +  D ++G+LN  +F ++L GS   +++ +++  D D+FK+IND+FGH  GD  +
Sbjct: 84  RLSEKASRDDMTGMLNRESFFAALDGSRRKSDRGALLIIDADHFKKINDSFGHLTGDDAL 143

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  +     +   +GR+GGEEF A  +G++EQEA  +A  +R+ +E  +       +
Sbjct: 144 LLIASAIERGVRSGDVLGRIGGEEFGAFLVGATEQEAKRVAERIRREVELIRFRPVDERT 203

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           I +T+S G         +S ++  AD+ LY AK  GRN  +  +DI
Sbjct: 204 IPLTVSIGGTVCGEDVNVSELMRAADRRLYQAKHRGRNLTILDTDI 249


>gi|323963644|gb|EGB59173.1| GGDEF domain-containing protein [Escherichia coli M863]
          Length = 362

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 100/190 (52%), Gaps = 10/190 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129
           ++ I  I +S  +  I+ S++K++ +  +    L+++   SGL  + A  S      + L
Sbjct: 158 TMAICPIMVSFSVAAIN-SLMKQVALRAD-FDFLTQVYSRSGL--YEALKSPSLKQTQHL 213

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DIDYFK INDN+GH  GDKV++  +  +  + G    V R+GGEEFA A    + 
Sbjct: 214 TVMLLDIDYFKSINDNYGHECGDKVLSVFAQHIQKIVGDKGLVARMGGEEFAVAVPSVNP 273

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-----EPISTIIYRADQAL 244
            +  ++A  +RK +E          ++++T+S G+   C       +  + ++  AD  L
Sbjct: 274 VDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSIGVGSGCASYRTLTDDFNKLMVEADTCL 332

Query: 245 YVAKKSGRNR 254
           Y +KK GRNR
Sbjct: 333 YRSKKDGRNR 342


>gi|311279495|ref|YP_003941726.1| diguanylate cyclase [Enterobacter cloacae SCF1]
 gi|308748690|gb|ADO48442.1| diguanylate cyclase [Enterobacter cloacae SCF1]
          Length = 457

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 90/172 (52%), Gaps = 10/172 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
           Y    Q S  D ++ L N S F  SL       +  +  S++  D+D+FK+IND++GH  
Sbjct: 284 YQNSYQNSIRDPMTQLYNRSYFYDSLTQTIARVTPQQPASVIVCDLDHFKRINDSYGHLQ 343

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDKVI F++  L           R+GGEEFA   + +S +EA  +A  +R II       
Sbjct: 344 GDKVIQFVASILQDSVRENDLAARIGGEEFALLLVNTSSEEAYRVAERIRLIISEHDAQS 403

Query: 211 SSG--PSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           SSG  P   ITIS G+         +   + RAD+A+Y AK++GRNRVV + 
Sbjct: 404 SSGSFPE-KITISMGVFTTTSAGLGVEVCVQRADEAMYQAKENGRNRVVTWQ 454


>gi|302383279|ref|YP_003819102.1| diguanylate cyclase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193907|gb|ADL01479.1| diguanylate cyclase [Brevundimonas subvibrioides ATCC 15264]
          Length = 351

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 94/194 (48%), Gaps = 30/194 (15%)

Query: 91  KELFISYNRISQLSR---IDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           KE+      + Q+ R    D L+ L N  AF   L           + +S+   DID+FK
Sbjct: 165 KEVARLREHLEQVRRDAMTDALTNLANRKAFDEELLRACDEAEKKRQPMSLAVLDIDHFK 224

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-----------AAALGSSE 189
           + ND +GH  GD+V+ +++  +  +   P    R GGEEFA            AAL    
Sbjct: 225 RFNDTWGHQTGDQVLRYVASVIGRISKAPRVAARYGGEEFAIIFPSESAALVEAALNQIR 284

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           +E  I +  LR+   N ++         +TIS G+A+R   E  S+++ RAD+ALY +K+
Sbjct: 285 EE--IGSRALRRRSTNDELGA-------VTISGGLAQRRPGETGSSLLDRADEALYASKR 335

Query: 250 SGRNRVVCFSDIEN 263
           +GRN++     +E 
Sbjct: 336 AGRNKITNGERLEE 349


>gi|325567120|ref|ZP_08143787.1| signal transduction diguanylate cyclase [Enterococcus casseliflavus
           ATCC 12755]
 gi|325158553|gb|EGC70699.1| signal transduction diguanylate cyclase [Enterococcus casseliflavus
           ATCC 12755]
          Length = 404

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 78/141 (55%), Gaps = 8/141 (5%)

Query: 126 NEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF--GTP---MFVGRLGGE 178
           NEK  L +V  D+D+FKQIND+ GH +G++ + F SD+L       +P   + V R GGE
Sbjct: 265 NEKDQLVVVMMDLDHFKQINDHHGHQIGNQALTFFSDKLTTFLYQKSPSHLVEVYRYGGE 324

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EF      ++      +  +    + N Q+ +  G  + +  SAGI+E      IS I Y
Sbjct: 325 EFLVLFKENTSVSVKKIIEEFHLFLSNEQLKLE-GTQLTLYFSAGISEAGPTLDISEIFY 383

Query: 239 RADQALYVAKKSGRNRVVCFS 259
           +ADQALY AK+ GRNR + FS
Sbjct: 384 QADQALYEAKRKGRNRTIIFS 404


>gi|307719092|ref|YP_003874624.1| hypothetical protein STHERM_c14110 [Spirochaeta thermophila DSM
           6192]
 gi|306532817|gb|ADN02351.1| hypothetical protein STHERM_c14110 [Spirochaeta thermophila DSM
           6192]
          Length = 528

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 82/167 (49%), Gaps = 11/167 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  LS  D L+ L N       L         Y    S++  D+D+FK IND FGH  
Sbjct: 366 TRLEILSITDPLTSLFNRRKLQEELTREYQRALRYGSPFSLILIDLDHFKAINDTFGHGK 425

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+ ++++ L     +   VGR GGEEF      +   EA ++A  L     N     
Sbjct: 426 GDEVLKWIAEALRTQLRSTDIVGRWGGEEFLVLCPETRLSEAGLIATKL----GNEIART 481

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S  PS  +TISAG+A     + +  ++  AD+ LY AK+SGRN ++ 
Sbjct: 482 SPLPSYRVTISAGVASFSTGKSLEDLLKEADKKLYRAKESGRNTIIT 528


>gi|222053406|ref|YP_002535768.1| diguanylate cyclase [Geobacter sp. FRC-32]
 gi|221562695|gb|ACM18667.1| diguanylate cyclase [Geobacter sp. FRC-32]
          Length = 400

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 122/261 (46%), Gaps = 39/261 (14%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPF-YGLEYILVENLSLVIISITIS-LLLGYI 85
           M Y++ F   F+A  +    IFL Y  L  +   +   ++ N +   I+  I+ +   Y 
Sbjct: 125 MFYYTFFRLPFLAATVLSWTIFLLYEVLVIWTKSIPLPILTNNTFFFIAFNITGMSASYS 184

Query: 86  SGSILKELFISYNRI---------------------SQLSRIDCLSGLLNHSAFIS---- 120
               +++ F+   +I                      +++++D L+ L N   F S    
Sbjct: 185 IERYMRQDFLQRRKIREQTENLKKALLDVEKSRHEAEEMAKLDPLTSLYNRRHFFSIAER 244

Query: 121 ---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS---DQLVVVFGTPMFVGR 174
                  Y   LSI+  D+D+FK++ND +GH +GD+V+  L+   D+L+    TP    R
Sbjct: 245 ELARYRRYRHSLSIIMIDLDHFKRVNDTYGHFIGDQVLQALAAAIDKLMRKADTPC---R 301

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEP 232
            GGEEFA     +    A  L   ++  IE+++I+   GP I +T+S GIA  +      
Sbjct: 302 YGGEEFAILMPETDLAAAQNLGRRIKDAIESTEIDTRKGP-IKVTLSMGIASLDGAEDAC 360

Query: 233 ISTIIYRADQALYVAKKSGRN 253
           I  ++ RAD ALY AK SGR+
Sbjct: 361 IEQLVERADHALYQAKYSGRS 381


>gi|224371003|ref|YP_002605167.1| GGDEF domain family protein [Desulfobacterium autotrophicum HRM2]
 gi|223693720|gb|ACN17003.1| GGDEF domain family protein [Desulfobacterium autotrophicum HRM2]
          Length = 430

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 87/164 (53%), Gaps = 11/164 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + + +  D L+G+ N   F  +L S       Y   LS++ FDID+FKQ+ND++GH  GD
Sbjct: 268 LEKQASTDALTGIFNRMKFNQTLTSEIKRAKRYRVALSLILFDIDHFKQVNDSYGHLSGD 327

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  L+  +           R GGEEF   A  +S + A  LA  LR  IEN    +  
Sbjct: 328 TVLKHLARLVASNLREIDIFARWGGEEFVIQAPETSLESAIKLAEKLRSKIENY---VFP 384

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            P   IT+S G+A     +   T++ RAD+ALY AK+ GRN+VV
Sbjct: 385 APK-KITVSFGVATFRSSDNDITLVNRADEALYRAKEGGRNQVV 427


>gi|194292174|ref|YP_002008081.1| hypothetical protein RALTA_B1429 [Cupriavidus taiwanensis LMG
           19424]
 gi|193226078|emb|CAQ72025.1| conserved hypothetical protein; cyclic di-GMP synthetase domain
           (GGDEF); modular protein [Cupriavidus taiwanensis LMG
           19424]
          Length = 612

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 85/177 (48%), Gaps = 3/177 (1%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF--ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           L+E      ++ Q +R D L+GLLN  A   +S+    +E  S+V  D+D FKQIND  G
Sbjct: 432 LRERAALTAQLEQQARTDSLTGLLNRRALELVSARYGAHESASLVLIDVDRFKQINDRHG 491

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           HP GD+V+  ++ Q+  +      + R GGEEFA         EAA LA  LR  I +  
Sbjct: 492 HPAGDQVLRNIATQMRALVPAEGVLARFGGEEFALWLPHGRPGEAAALAETLRAAIASRP 551

Query: 208 INISSGPSIHITIS-AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + +S    + +T S               +   AD A+Y AK  GRN V    D+E 
Sbjct: 552 VYLSGTTQLAVTASFGVAVGHGGAGNWQRLFGAADAAMYRAKAEGRNCVREAQDLEG 608


>gi|39937055|ref|NP_949331.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009]
 gi|39650912|emb|CAE29435.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris
           CGA009]
          Length = 382

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 96/180 (53%), Gaps = 9/180 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFK 140
           S + ++  +   + +L+  D ++G+ N   F+       S    Y   +S +  DIDYFK
Sbjct: 182 SDVTDIVRNAEELERLATTDGMTGVYNRRHFLTLADREWSRARRYERPMSFLMIDIDYFK 241

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND FGH VGD++I  L+            + RLGGEEFA     +   +A ++A  LR
Sbjct: 242 AINDGFGHQVGDEMIVHLARLARDCKRDCDVLARLGGEEFALLLPETDLAQAEVVAERLR 301

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +  + + ++S  +I  T+S G+A      + +S ++  ADQALY AK +GRNRV+C +
Sbjct: 302 REVAGNALVVASH-AIPATVSIGVATALPGMKDVSDLMKAADQALYDAKHAGRNRVICRA 360


>gi|332140102|ref|YP_004425840.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|332143100|ref|YP_004428838.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550124|gb|AEA96842.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327553122|gb|AEA99840.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 325

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 11/160 (6%)

Query: 104 SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           SR+D L+GL N   +              ++  + V  DID+FK+IND +GH  GDKVI 
Sbjct: 159 SRVDGLTGLFNRRYWQERFDEMYKLCVRRDKPSTAVMLDIDHFKRINDTYGHQAGDKVIK 218

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            L+  +          GR GGEEFA     S+ ++A I+A  +R++ +   +    G SI
Sbjct: 219 MLAALIKRCVRETDLAGRYGGEEFAIILNDSTVEDARIVAERIRQLAQRLVVE-HEGESI 277

Query: 217 HITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNR 254
           + T+S G+A+ C   K P++ +   AD+ALY AK+SGRN+
Sbjct: 278 NFTVSLGLAQFCSAFKGPLAWLEC-ADKALYDAKESGRNQ 316


>gi|78042726|ref|YP_359012.1| GGDEF domain-containing protein [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77994841|gb|ABB13740.1| GGDEF domain protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 543

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 92/176 (52%), Gaps = 17/176 (9%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKL--SIVFFDIDYFKQINDNFGHP 149
           Y R+ +L++ D L+GL N   F+  L      S   KL  +IV  DIDYFK+IND +GH 
Sbjct: 372 YLRLKELAQKDELTGLYNRRYFLERLNEEHLRSRRHKLNYTIVLLDIDYFKKINDTYGHD 431

Query: 150 VGDKVI----AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GD V+     FL D L           R GGEEF      + ++EA +LA  LR+ ++ 
Sbjct: 432 CGDLVLNDFGRFLKDTLR----RTDLSARYGGEEFVVLLPQTGKKEAYLLAERLREKVK- 486

Query: 206 SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            ++ I  G  +  T+S G+A      E    ++  AD+ALY AK  GR++VV  ++
Sbjct: 487 ERVLIFQGQKVKYTVSMGLAAYPEDAEEYRELLSLADKALYQAKNRGRDKVVMVNN 542


>gi|77360154|ref|YP_339729.1| sensory box/GGDEF protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76875065|emb|CAI86286.1| conserved protein of unknown function ; putative sensory box/GGDEF
           family protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 323

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 96/182 (52%), Gaps = 9/182 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLS-----IVFFDIDYFKQIN 143
           KEL     ++ Q+S+ D L+ L N   +  +L       K S     ++ FDID+FK++N
Sbjct: 142 KELEQLNKKLEQVSQTDSLTQLANRGHWEHTLRQEFLRTKRSGGCSTLLMFDIDHFKKVN 201

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD+ +  ++  L          GR GGEEFA   L + +Q A I+A  LR++I
Sbjct: 202 DEYGHSCGDEALRHIAKLLKGTLRETDIAGRYGGEEFAITLLDTDKQGAMIIAERLRELI 261

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             + +       + +T+S GIA   ++ +     I  AD+ALY +K +GRN +  F DI+
Sbjct: 262 AATPVAYKD-QLVSMTVSIGIASYSNEFKNHERWIEAADKALYNSKHNGRNSITMFDDIK 320

Query: 263 NN 264
           N+
Sbjct: 321 ND 322


>gi|88861223|ref|ZP_01135856.1| GGDEF family protein [Pseudoalteromonas tunicata D2]
 gi|88816816|gb|EAR26638.1| GGDEF family protein [Pseudoalteromonas tunicata D2]
          Length = 360

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 93/175 (53%), Gaps = 22/175 (12%)

Query: 99  RISQLSRIDCLSGLLNHSAF---ISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  Q +  D L+GLLN  +F   I+ L S    N  L + F DID FKQ ND+FGH  GD
Sbjct: 186 QTKQDATHDALTGLLNRGSFDDDITQLCSNTKSNSSLFLTFVDIDNFKQFNDDFGHQKGD 245

Query: 153 KVIAFLS-------DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +V+  ++       DQL + +       R GGEEF   +  SS+Q        LR  IE 
Sbjct: 246 QVLKIVAKMLHNKCDQLNIAY-------RFGGEEFCIISQNSSQQICFDFVESLRVAIER 298

Query: 206 SQINIS-SGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +  S +G ++  I+ S GIA     +  + +I +ADQALY+AK+SGRNRV  F
Sbjct: 299 LSVKDSKTGANLRKISASFGIARHQQHDSPAELIEKADQALYLAKQSGRNRVEIF 353


>gi|320333551|ref|YP_004170262.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
 gi|319754840|gb|ADV66597.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
          Length = 376

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 99/196 (50%), Gaps = 21/196 (10%)

Query: 84  YISGSILK--ELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIV 132
           Y+SG++L   +  +++ R     +  ++ +D L+GL N       L  +       LS+V
Sbjct: 179 YLSGAVLIGIQYALAFARKRDREVHLMAYMDFLTGLPNRRYAEGHLAQHTRPGHAPLSVV 238

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK+IND +GH VGD V+  L+  L    G    + R GGEEF      +   +A
Sbjct: 239 MLDLDHFKRINDTYGHHVGDHVLRELAQVLSRHTGRARVLARWGGEEFLLILPDTVLADA 298

Query: 193 AILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
             LA  +R+ +E     ++ ++       TISAG+A+    E    ++ RAD ALY AK 
Sbjct: 299 HALAERMRQSVEAHVFDEVGVA-------TISAGVAQAEADEAAHAVLRRADAALYRAKG 351

Query: 250 SGRNRVVCFSDIENNT 265
            GRNRV+  ++    T
Sbjct: 352 QGRNRVMADTEPRGGT 367


>gi|313498170|gb|ADR59536.1| Diguanylate cyclase [Pseudomonas putida BIRD-1]
          Length = 474

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 86/169 (50%), Gaps = 13/169 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE---------KLSIVFFDIDYFKQINDNFGHP 149
           R++  + +D L+G+L  SAF     +  E          L+++  DID+FK IND  GH 
Sbjct: 297 RLAHQATVDHLTGVLTRSAFTRRANALLESRQQHAQALPLTLMMLDIDHFKSINDAHGHA 356

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+V+   +  L         + RLGGEEF     G + + A   A  LR+ I++  + 
Sbjct: 357 VGDQVLRQFASTLQDQLHNDELIARLGGEEFVVILPGLAPERANFTAERLRRAIQDLHV- 415

Query: 210 ISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRV 255
           + +   + IT+S G+A      P   +  ++  ADQALY AK  GRNRV
Sbjct: 416 VQADQRLQITVSIGVAGCDADMPAPSLDELLASADQALYRAKARGRNRV 464


>gi|311695657|gb|ADP98530.1| sensory box/GGDEF family protein [marine bacterium HP15]
          Length = 344

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 114/237 (48%), Gaps = 31/237 (13%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLL-------LGYISGSI-------------L 90
           F  G+   Y L  +++ +L  V + +  S+         G+++GS+             L
Sbjct: 106 FVFGMKFHYALTAMVLSSLGFVGLMLMDSVYGERTWMNAGFVAGSLFVGVIGRHRIDRLL 165

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
            +L  +  ++  LS ID L+ L N  A +S  G         N++L+++  D+D+FKQ N
Sbjct: 166 GQLQEANEQLVGLSTIDELTDLFNRRALMSESGRLFARQRRSNQRLAVLMMDLDHFKQFN 225

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D++GH  GD+ I   +D +  VF      +GR GGEEF A   G       +LA ++ K 
Sbjct: 226 DHYGHQQGDQAIRQQADIMRQVFKRQTDILGRYGGEEFMAVIEGEDADRFELLAAEVLKQ 285

Query: 203 IENSQINISSGP-SIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256
            ++  ++    P S  ++ S GI +    E   I  +I  AD+ALY AKK GR R V
Sbjct: 286 WQDRAVSNEDSPDSKELSCSIGICQGLATEFDSIDEMIRMADEALYRAKKQGRARYV 342


>gi|227114954|ref|ZP_03828610.1| putative signaling membrane protein [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 532

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 89/169 (52%), Gaps = 15/169 (8%)

Query: 97  YNRISQLS---RIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPV 150
           + RI +LS     D L+GLLN      S+    S + +++ +  DID+FK++ND +GH +
Sbjct: 356 HKRIGKLSLQAHTDPLTGLLNRRGIYESIELILSKSNRVAAIVIDIDHFKRVNDTYGHNI 415

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VI  L+  +         + R GGEEF A    +   +AA +A  LRK +E   + I
Sbjct: 416 GDDVIRLLAKNIKQGSRESDLICRTGGEEFLALLPDTDMTQAADIAERLRKKVEKMPLPI 475

Query: 211 SSGPSIHITISAGIAERCHK---EPISTIIYRADQALYVAKKSGRNRVV 256
                 +ITIS G+   C     E I +++  AD ALY AK  GRNRVV
Sbjct: 476 PE----NITISLGVT--CFTPGMEQIDSVLKIADDALYQAKHEGRNRVV 518


>gi|149185851|ref|ZP_01864166.1| diguanylate cyclase, putative [Erythrobacter sp. SD-21]
 gi|148830412|gb|EDL48848.1| diguanylate cyclase, putative [Erythrobacter sp. SD-21]
          Length = 393

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 110/211 (52%), Gaps = 13/211 (6%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR-IDCLSGL 112
           G+ PFY LE +    +   II+ T  ++ G++     ++  ++  R ++L+  +D L+ +
Sbjct: 181 GMMPFY-LEAMGAALMVEFIITAT-GVVDGFMRFKSERDRALADMREAKLATALDPLTNI 238

Query: 113 LNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            N        ++ G    K  +   D D+FK+IND FGH VGDKV+  ++  L       
Sbjct: 239 ANRRGLEQHFNAKGRMRPK-GLALIDCDHFKRINDQFGHDVGDKVLIAIAQGLD---SGS 294

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
           +FV RLGGEEF     G   QE A  A   R+I +    NI   P   IT SAG++    
Sbjct: 295 LFVARLGGEEFVLLLYGEDWQEDAEAAR--RRITQVVHANIPEIP-YPITASAGLSAIEE 351

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            + + + + RAD+ALY AK+SGRNR +  S+
Sbjct: 352 SDTLGSAMKRADKALYAAKESGRNRSLALSE 382


>gi|302343713|ref|YP_003808242.1| diguanylate cyclase [Desulfarculus baarsii DSM 2075]
 gi|301640326|gb|ADK85648.1| diguanylate cyclase [Desulfarculus baarsii DSM 2075]
          Length = 361

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 13/207 (6%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--- 115
           YGL   +++NLS ++   +++         + K L  + +R+++LS  D L+ L NH   
Sbjct: 152 YGLVAEMIDNLSRIMELKSLAEARSNDLDDLNKRLRDANHRLTELSITDGLTSLFNHRYT 211

Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  I         LSI+  D+D+FK++ND  GH  GD+ +   S  L         
Sbjct: 212 HQRLEEEIRRCQRSETPLSIIMADLDHFKRLNDRLGHLAGDEALRLFSGWLRECVRNTDL 271

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI---TISAGIAERC 228
           +GRLGGEEF    L     +A ++A  +R+    +Q N  + P   I   T+S G+A+  
Sbjct: 272 LGRLGGEEFVVVLLDCPLDQALLVAEKIRR---TTQANSQAPPFEAIGGFTVSLGVAQWR 328

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRV 255
             +  S ++  AD+ALY AK+ GRN+V
Sbjct: 329 PGQEASQLLDAADKALYQAKERGRNKV 355


>gi|300855858|ref|YP_003780842.1| membrane associated GGDEF domain-containing protein [Clostridium
           ljungdahlii DSM 13528]
 gi|300435973|gb|ADK15740.1| membrane associated GGDEF domain containing protein [Clostridium
           ljungdahlii DSM 13528]
          Length = 373

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 102/191 (53%), Gaps = 7/191 (3%)

Query: 73  IISITISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----N 126
           I++IT   ++ Y+   I +   LF+ +   S    +  L+ + N +   + L        
Sbjct: 180 ILTITFGFIIYYLCEYINQSSLLFLKFKEDSCRDFLTGLNNVRNFNNLFNDLSKRAVERK 239

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           E+LS++  DID+FK+IND +GHP GD+V+  ++  L  V  +   + R GGEEF+   + 
Sbjct: 240 ERLSLIMIDIDWFKKINDTYGHPSGDEVLKQIALILKTVCRSFDIISRNGGEEFSILLID 299

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALY 245
              ++A  +   +RK IE  +  +S+G  I+I++S G+         +  II  AD ALY
Sbjct: 300 CPNRQAIEIGEQIRKAIEKHEFILSTGKKINISVSIGVTTYPDIVNNVKQIIESADIALY 359

Query: 246 VAKKSGRNRVV 256
            AK +GRN+V+
Sbjct: 360 EAKHTGRNKVI 370


>gi|78778089|ref|YP_394404.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78498629|gb|ABB45169.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM
           1251]
          Length = 555

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/130 (41%), Positives = 75/130 (57%), Gaps = 8/130 (6%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS+V FD+D FK INDN+GH VGDKV+   +  +           R+GGEEFA      +
Sbjct: 432 LSLVIFDMDNFKNINDNYGHDVGDKVLIEYTKLITTCLRDSDIFCRIGGEEFALILPHVN 491

Query: 189 EQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
           + +A  LA+ +R K+ E++QI       + IT+S G+ E    E +     RAD+ALY A
Sbjct: 492 KSDAYKLADKIRSKVQEHNQI-------VAITMSFGVTEYKKDEDLELTFKRADKALYEA 544

Query: 248 KKSGRNRVVC 257
           K +GRNRVV 
Sbjct: 545 KNAGRNRVVA 554


>gi|317127021|ref|YP_004093303.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Bacillus cellulosilyticus DSM 2522]
 gi|315471969|gb|ADU28572.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Bacillus cellulosilyticus DSM 2522]
          Length = 762

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 94/180 (52%), Gaps = 10/180 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQIN 143
           +L  LF S   I +L+  D L+GL N + F S           ++++I+F DID FK+IN
Sbjct: 319 MLYALFQSQTEIQKLALTDELTGLSNRNDFRSRFEVMVKAEAQQRIAILFIDIDLFKRIN 378

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH VGD VI   S +L         VGR GG+EF  A     E+E   L+  L  ++
Sbjct: 379 DALGHYVGDTVIKETSKKLKENIPPDAIVGRWGGDEFIVALPFEEEREVVTLSKQL--LL 436

Query: 204 ENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           + ++  +  G +  IT S GI  A    KEP   +I +AD A+Y AK+ G+N+   + D+
Sbjct: 437 DIARPIVMKGYTFEITSSIGISTAPNDAKEP-EDLIRQADIAMYEAKRHGKNQYRFYQDV 495


>gi|332760662|gb|EGJ90950.1| diguanylate cyclase domain protein [Shigella flexneri 4343-70]
          Length = 320

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 106/201 (52%), Gaps = 25/201 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II +   L+ G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 125 LSLPII-VVYPLMFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 183

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 184 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 243

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 244 VIMSGTPA-ESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 294

Query: 239 R-----ADQALYVAKKSGRNR 254
           R     AD ALY AKK+GRNR
Sbjct: 295 REWLKSADLALYKAKKAGRNR 315


>gi|331015155|gb|EGH95211.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 425

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 91/165 (55%), Gaps = 11/165 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +++  D L+GL N  A        I++     +  S +  DID+FK +ND++GHP 
Sbjct: 255 QKLLEIAHSDTLTGLDNRRAAEHTLERMINTARIAGKPFSFIICDIDHFKSVNDHYGHPA 314

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  ++  L           R GGEEF      SS ++AA LA  +RK +E+ +I  
Sbjct: 315 GDSVLKSVAAILKHRIRAFDVAARWGGEEFLILVPDSSLKQAAELAERVRKGVESLEIP- 373

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +GP   +TIS G+AE    E  +++I RAD+ LY AK+ GRNRV
Sbjct: 374 EAGP---VTISLGVAELSPGETAASLIQRADKVLYQAKRLGRNRV 415


>gi|323495199|ref|ZP_08100283.1| diguanylate cyclase [Vibrio brasiliensis LMG 20546]
 gi|323310558|gb|EGA63738.1| diguanylate cyclase [Vibrio brasiliensis LMG 20546]
          Length = 271

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 85/163 (52%), Gaps = 10/163 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGD 152
           R+ + +  D L+ LLN   F +   +    ++       +  DID FK INDN+GH +GD
Sbjct: 107 RLREQAMTDPLTSLLNRRGFHNLFDNQQTNVTSHQGACFIICDIDNFKTINDNYGHDIGD 166

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  LS  L      P FV R GGEEF       S  +A+++AN L+  I ++  N   
Sbjct: 167 ETLIRLSKILKSNIDQPNFVVRWGGEEFIIVLFSHSIHQASVIANHLKNTISSTHFNQVG 226

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                ++ S GI++    E     I R+D+ALY+AKK+G+NRV
Sbjct: 227 S----VSASFGISQLKPNEAKEYAISRSDKALYIAKKNGKNRV 265


>gi|149375602|ref|ZP_01893371.1| response regulator receiver domain protein (CheY-like)
           [Marinobacter algicola DG893]
 gi|149360004|gb|EDM48459.1| response regulator receiver domain protein (CheY-like)
           [Marinobacter algicola DG893]
          Length = 588

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 97/184 (52%), Gaps = 17/184 (9%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           +EL  +  ++  +S  D L+G+ N   F   L +       +   LS+V  DIDYFK++N
Sbjct: 399 EELEQANEQLKAVSITDGLTGVANRRQFDEKLAAEWQRALRHGHPLSLVLLDIDYFKRVN 458

Query: 144 DNFGHPVGDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           DNFGH  GD     +A++    +   G    + R GGEEF+     + E  AA +A  LR
Sbjct: 459 DNFGHLAGDDCLVSVAWVCASEIQRSGD--LLARYGGEEFSVLLPATPEAGAASVAERLR 516

Query: 201 KIIENSQINISSGPS-IHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +  + + +    S +++++SAG+A         P S +I RAD+ALY AK +GRN+V+
Sbjct: 517 VAVAGTSVYVGDHVSPLNLSVSAGVATILPEAGSRP-SELISRADEALYAAKGAGRNQVM 575

Query: 257 CFSD 260
            F +
Sbjct: 576 VFRE 579


>gi|150015543|ref|YP_001307797.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052]
 gi|149902008|gb|ABR32841.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052]
          Length = 1784

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 90/166 (54%), Gaps = 13/166 (7%)

Query: 104  SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
            S +D L+G+ N   F       + S  +   + +++ FDID FK +ND +GH  GD+V+ 
Sbjct: 1447 STLDKLTGVYNRKYFEEALLFLLDSAKARESEFAVMMFDIDDFKGVNDKYGHQTGDEVLV 1506

Query: 157  FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPS 215
             ++D++         +GR GGEEF    L +   EAAI L   +RK IE ++I    G  
Sbjct: 1507 KVADEVKKCMSKGDIIGRYGGEEF-IILLPNVNCEAAINLGERIRKNIEEARI---LGDK 1562

Query: 216  IHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
              +T+S GIA   ++      II RADQALY AK+ G+NR + + +
Sbjct: 1563 RKVTVSIGIAMSSYESLNNEEIIRRADQALYKAKRDGKNRCIVWEN 1608


>gi|332308157|ref|YP_004436008.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175486|gb|AEE24740.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 318

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 92/169 (54%), Gaps = 13/169 (7%)

Query: 98  NRISQLSRIDCLSGLLNHS--------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           + + +LSR+D L+G+ N           F  +L +  E  S++  DID+FK+INDN+GHP
Sbjct: 149 DELQRLSRVDGLTGIYNRRYWEEQFDREFKRNLRTPGES-SVIMLDIDHFKKINDNYGHP 207

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+VI  L+  +  V       GR GGEEFA     ++     +LA  +R  +E  +I 
Sbjct: 208 AGDEVIRQLAQLIEDVSRETDICGRYGGEEFAILLPDTASANVMVLAQRIRASVEKLKIE 267

Query: 210 ISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                +I  T+S GIA+      + I   +  AD+ALY AKK+GRN+V+
Sbjct: 268 YEQH-TISFTVSLGIAQFNTAFGQHIQ-WLEEADKALYQAKKNGRNQVI 314


>gi|194307175|gb|ACF42099.1| response regulator [Enterobacter sp. FMB-1]
          Length = 294

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 86/162 (53%), Gaps = 8/162 (4%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +Y     L+  D L+GL N       L    N++ +I   DIDYFK IND +GH +GDKV
Sbjct: 138 NYQSAVSLAFTDELTGLPNRRHLNFKLKEIENKRCTICIADIDYFKNINDTWGHEMGDKV 197

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +A +  +L+ +    +F+ R GGEEF          EA   A  +R I    +   + G 
Sbjct: 198 LASVGLKLMNLSSNNLFIARSGGEEFCIII-----TEATDAAAQIRNICAFLEGGCNGG- 251

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            ++IT+S G A +   E  S ++ RAD ALY AK SGRNR+V
Sbjct: 252 -VNITLSVGAATKEANEMSSWVMERADAALYQAKNSGRNRIV 292


>gi|296159771|ref|ZP_06842593.1| diguanylate cyclase [Burkholderia sp. Ch1-1]
 gi|295889985|gb|EFG69781.1| diguanylate cyclase [Burkholderia sp. Ch1-1]
          Length = 591

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 82/160 (51%), Gaps = 9/160 (5%)

Query: 107 DCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ LLN  AF S          +   +L+++ FDID+FK+IND +GH  GD  +  ++
Sbjct: 422 DFLTHLLNRRAFESRARLSCAERNAAEPELALIMFDIDHFKKINDTYGHATGDHALQLVA 481

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
                +      V R GGEEFA  +      +A  +A  LR+ I  ++I  S G    IT
Sbjct: 482 RLCREICRQSDVVARWGGEEFAVLSRVQDAAQALAVAERLRRRISETRIPFSGGEGFTIT 541

Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            S G+  A  C    +  +  RAD+ LY AK++GR+R+V 
Sbjct: 542 ASFGVAFASACDSRDVDRLFRRADRLLYQAKEAGRDRIVA 581


>gi|123443225|ref|YP_001007199.1| diguanylate cyclase/phosphodiesterase domain-containing protein
           [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122090186|emb|CAL13049.1| putative diguanylate cyclase/phosphodiesterase domain 1 protein
           [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 350

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 101/195 (51%), Gaps = 15/195 (7%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSL 122
           L +I+I  SLL G ++    K L  +   + ++S  D L+GL N        H+ F  S 
Sbjct: 157 LPMITIYPSLL-GLVTYRTAKRLAENKEELLRISVRDGLTGLYNRRHWEHQLHNQF-DSC 214

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
             Y    S++  DID FK IND FGH VGD+ I  L+++L++       VGR GG+EF A
Sbjct: 215 RRYQHGASLILLDIDNFKSINDTFGHAVGDEAITVLAEELLLGLRAIDIVGRYGGDEFGA 274

Query: 183 AALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRA 240
               ++ EQ   +L     ++   + +  +  P + + +SAGIA+  H        +  A
Sbjct: 275 ILPNTTAEQTREVLMRIQERL---ADLVFTQAPPLQLRVSAGIADYRHDMINYQQWLKAA 331

Query: 241 DQALYVAKKSGRNRV 255
           D ALY+AK +GRNR+
Sbjct: 332 DSALYLAKDNGRNRI 346


>gi|254427712|ref|ZP_05041419.1| GGDEF domain protein [Alcanivorax sp. DG881]
 gi|196193881|gb|EDX88840.1| GGDEF domain protein [Alcanivorax sp. DG881]
          Length = 358

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 23/173 (13%)

Query: 98  NRISQLSRIDCLSG---------LLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
            RI  ++  D L+G         LL+ +   S+ G+Y  +L +V+ D+D+FK+ ND +GH
Sbjct: 190 ERIHDMAVKDELTGFYRRRHAMELLSKACGQSARGAY--QLGVVYLDLDHFKKTNDQYGH 247

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD V+   +D          F  RLGGEEF      S  +EA       R ++E   +
Sbjct: 248 RMGDLVLQRFADVTQRHLTNQDFAARLGGEEFMLVLPVSDPEEA-------RNLVEGILM 300

Query: 209 NISS-----GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            + S      P + +T+S G+A   H E  + +I RADQALY AK++GR+R++
Sbjct: 301 GMRSQRFKDAPGLVVTVSGGLAMLNHGETPAQLIRRADQALYRAKETGRDRLI 353


>gi|126735069|ref|ZP_01750815.1| diguanylate cyclase response regulator [Roseobacter sp. CCS2]
 gi|126715624|gb|EBA12489.1| diguanylate cyclase response regulator [Roseobacter sp. CCS2]
          Length = 442

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 87/162 (53%), Gaps = 12/162 (7%)

Query: 107 DCLSGLLNH---SAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N       ++ L   + K    L+++  DID+FK +ND  GH  GD+V+  L+
Sbjct: 275 DPLTGLFNRRYVEPHLARLADQSRKSGRELAVMMIDIDHFKAVNDTHGHAAGDQVLIELA 334

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHI 218
           D+L         V R+GGEEF  A  G+S  +A + A+ LR ++      + S  P I +
Sbjct: 335 DRLRENLRAIDLVARMGGEEFLVAMPGTSVTDARLAADRLRALVNTMPFELGSDLPDIKV 394

Query: 219 TISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVV 256
           T+S G+A     +P    I+ I  +AD+ALY AK  GR++V 
Sbjct: 395 TVSIGLAVSGQIKPETAAINKICAQADKALYAAKSGGRDQVA 436


>gi|78776221|ref|YP_392536.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78496761|gb|ABB43301.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM
           1251]
          Length = 387

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 85/160 (53%), Gaps = 7/160 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +L+  D L+ L    A I  +     K S    DID+FK+ ND +GH  GD+V+  ++ +
Sbjct: 228 RLAFYDELTALPGRRALIEDMAKLGMKYSFAMIDIDHFKKFNDTYGHDTGDEVLKMVASK 287

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSIHI 218
           L  V G      R GGEEF          E+    + LR+II  S     N  S  +I+I
Sbjct: 288 LAEVGGGGK-AYRYGGEEFVVLFPSRELDESYKSTDILREIISKSPFVVRNKQSSKTIYI 346

Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256
            IS+G+ ++    K+P + ++ RAD ALY AKK+GRN+VV
Sbjct: 347 NISSGVVQKTSQDKDPFA-VMKRADNALYKAKKAGRNQVV 385


>gi|327394760|dbj|BAK12182.1| diguanylate cyclase YdaM [Pantoea ananatis AJ13355]
          Length = 526

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 87/168 (51%), Gaps = 8/168 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+S  ++ D L+ LLN     + L  Y    +  +++  DID+FK +NDN+GH VGD+VI
Sbjct: 361 RLSSEAQTDSLTLLLNRRGLNAVLDYYQTMRQPFAVLALDIDHFKSVNDNWGHDVGDRVI 420

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L         V R GGEEF      +  +EA   A  +R  I ++ I       
Sbjct: 421 RQVAQTLRQSARQSDVVCRNGGEEFLMLLPNTPLKEAEATAERIRISIADNAIEAVG--- 477

Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            HITIS G+AE    + P+ + + RAD ALY AK SGRN  V    ++
Sbjct: 478 -HITISIGVAEWDARRPPLESSLKRADDALYQAKNSGRNCTVVAKRVK 524


>gi|254515403|ref|ZP_05127464.1| GGDEF domain protein [gamma proteobacterium NOR5-3]
 gi|219677646|gb|EED34011.1| GGDEF domain protein [gamma proteobacterium NOR5-3]
          Length = 540

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 12/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           +EL      +  L+ +D L+   N  A   +L         Y   LSI+  DID FKQ+N
Sbjct: 358 RELEAKNEELDHLASVDKLTDTFNRRALDKALLAELERADRYQRPLSILLMDIDLFKQVN 417

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GDKV+  LS  +         +GR GGEEF      +  ++A  +A  +R+ I
Sbjct: 418 DEYGHLTGDKVLVTLSQTIRENLRASDILGRWGGEEFLVICPETDLEQARNVAEKVRQAI 477

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E +   +       ITIS G++         +++  AD+ALY AK  GRNR VC + I
Sbjct: 478 EGTDFELGKT----ITISIGLSVLIEGTSAESLVAEADKALYQAKSQGRNR-VCTTPI 530


>gi|51894243|ref|YP_076934.1| hypothetical protein STH3108 [Symbiobacterium thermophilum IAM
           14863]
 gi|51857932|dbj|BAD42090.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 425

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 77  TISLLLGYISGSILKELF--ISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128
           T +L  G   G++L  +F  IS  +     +  L+  D L+G  N  +F+   G   ++ 
Sbjct: 207 TAALPPGAGDGAVLVCVFRDISARKRLESDLKHLATTDGLTGAYNRRSFVEVCGQELQRA 266

Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                  S++  DID+FK++ND FGH  GD+V+  + +    V  +   VGR+GG+EFA 
Sbjct: 267 DRRARPTSLLLMDIDHFKRLNDRFGHAAGDEVLRQIVETGRRVLRSEDVVGRIGGDEFAV 326

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRAD 241
               ++ ++A  +A  LR   E   +    G +   T+S G+AE + H   +  ++ RAD
Sbjct: 327 LLPATTLEQAGRVAEQLRTTYERLAVPARGG-TATFTVSFGVAEWKPHLRTVEELLQRAD 385

Query: 242 QALYVAKKSGRN 253
           +ALY AK +GRN
Sbjct: 386 RALYAAKNAGRN 397


>gi|311694996|gb|ADP97869.1| response regulator receiver domain protein (CheY-) [marine
           bacterium HP15]
          Length = 613

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 87/176 (49%), Gaps = 8/176 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFK 140
           + ++EL  +  ++S LS  D L+GL N            +     ++ L++   D D+FK
Sbjct: 429 NTMRELEKANRKLSTLSLNDALTGLYNRRHLNNIFPELCAEARRTSQPLTLALVDADHFK 488

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDL 199
            IND +GH  GD  + F+++ L      P  V  R GGEEFA    G+    A  + + L
Sbjct: 489 NINDTWGHGFGDSCLQFIAEMLTRHVKRPRDVAIRFGGEEFALLLPGTDANGALNVCSAL 548

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + I  + +    G  + IT+SAGIA     E  + +  RAD+ALY AK  GRNR 
Sbjct: 549 LQDIARTPLLSPDGNKVKITLSAGIASLVSGETQNQLFERADEALYRAKSRGRNRA 604


>gi|327543277|gb|EGF29710.1| protein containing Diguanylate cyclase, predicted domains
           [Rhodopirellula baltica WH47]
          Length = 797

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 85/157 (54%), Gaps = 9/157 (5%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N + F S L        + N   S++  DID+FKQ+ND  GHP GD+ +   +
Sbjct: 487 DPLTGIANRAEFDSRLVRATADSKNNNSTFSLIICDIDHFKQVNDVHGHPAGDEALVQFA 546

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF   A+ S    AA  A  +RK IE + ++  +G S  +T
Sbjct: 547 RVLESHARDEDLVARYGGEEFVFLAINSDNATAARRAEQIRKAIEVTPLDGLNGES--VT 604

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +S G+ E    +   TI+ R+D+AL  AK++GRNRVV
Sbjct: 605 VSFGVTEYQTGDAAETILARSDRALLQAKENGRNRVV 641


>gi|302388191|ref|YP_003824013.1| diguanylate cyclase with PAS/PAC sensor [Clostridium
           saccharolyticum WM1]
 gi|302198819|gb|ADL06390.1| diguanylate cyclase with PAS/PAC sensor [Clostridium
           saccharolyticum WM1]
          Length = 511

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 106/207 (51%), Gaps = 21/207 (10%)

Query: 66  VENLSLVIISITISLLLGYISGS--ILKELF------ISYNRISQLSRIDCLSGLLNHSA 117
           +E+    +IS+ IS + G  +GS  ++  LF       + N +  ++  D L+GL N   
Sbjct: 306 IEDKDGNMISVIISAVTGIYNGSEAVMINLFDVTAQKQAENALKNIAIKDELTGLYNRH- 364

Query: 118 FISSL--------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
           F+ S+          Y+  LS    D+D+FK++ND +GHPVGD V+   ++ L       
Sbjct: 365 FLESIIDEEFDRAKRYDIPLSAALLDLDHFKKVNDKWGHPVGDSVLKLTANLLQNNIRKS 424

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
            +  R+GGEE       +  Q A + A  +RK IE + I+   G     T S G+AER  
Sbjct: 425 DYAIRIGGEELLILMPNTDSQGAYVTAEKVRKAIEEA-IHPVVG---RYTASFGVAERTM 480

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV 256
           +E  + +  R D+ALY AK +GRNRVV
Sbjct: 481 EEKYTDLYSRIDKALYQAKNNGRNRVV 507


>gi|51246803|ref|YP_066687.1| hypothetical protein DP2951 [Desulfotalea psychrophila LSv54]
 gi|50877840|emb|CAG37680.1| hypothetical protein DP2951 [Desulfotalea psychrophila LSv54]
          Length = 571

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 87/165 (52%), Gaps = 10/165 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFIS------SLGSYN-EKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ +++  D L+ L N   F S      +L  +N + LS++  DID+FK +ND  GH  G
Sbjct: 405 KLVRIAATDSLTKLNNRRHFFSLGHEELALHLHNAQPLSVLMLDIDHFKNVNDTLGHQAG 464

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS-QINI 210
           DKV+   S    V   +   +GR+GGEEFA     +   +A   A  +R  IE S +   
Sbjct: 465 DKVLKIFSKICAVNLRSVDIIGRIGGEEFAVILTNTPRSQAQRTAERIRLAIETSPEFTK 524

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S P   IT+S GIA     E +  II RAD+ LY AK +GRNR+
Sbjct: 525 QSLPK--ITVSIGIATNQPPENLDAIICRADKNLYQAKSNGRNRI 567


>gi|308172899|ref|YP_003919604.1| diguanylate cyclase or phosphodiesterase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605763|emb|CBI42134.1| putative diguanylate cyclase or phosphodiesterase [Bacillus
           amyloliquefaciens DSM 7]
 gi|328552539|gb|AEB23031.1| diguanylate cyclase or phosphodiesterase [Bacillus
           amyloliquefaciens TA208]
 gi|328910939|gb|AEB62535.1| putative diguanylate cyclase or phosphodiesterase [Bacillus
           amyloliquefaciens LL3]
          Length = 360

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 9/158 (5%)

Query: 107 DCLSGLLNHSAF--ISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+G+ N   F  +S +       S + +L++++FDID+FKQIND +GH  GD+V+  L
Sbjct: 196 DFLTGIFNKRKFEEVSRVLYDRASQSASSQLALIYFDIDHFKQINDQYGHYEGDQVLKEL 255

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +L  +        R+GGEEFA      + ++   LA ++R+ I+ + I ++SG +I +
Sbjct: 256 GARLRFLISGSDPSARIGGEEFAVLIPNCTYKKGLHLAEEIRQAIDGNPILLTSGDTIPV 315

Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T+S GIA    +     T+   AD+ LY AK SGRN+V
Sbjct: 316 TVSLGIAHYPTNTADPQTLPLIADRLLYKAKTSGRNQV 353


>gi|290509246|ref|ZP_06548617.1| diguanylate cyclase (GGDEF) domain-containing protein [Klebsiella
           sp. 1_1_55]
 gi|289778640|gb|EFD86637.1| diguanylate cyclase (GGDEF) domain-containing protein [Klebsiella
           sp. 1_1_55]
          Length = 453

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 84/159 (52%), Gaps = 11/159 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+ L N S F  +L     K      LS++  D+D+FK+INDN+GH  GDKVI F + 
Sbjct: 294 DPLTRLYNRSFFYDTLNQQLAKVNPQHPLSVIISDLDHFKRINDNYGHVAGDKVIQFAAS 353

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            L           R+GGEEFA   + ++E++A  +A  +R  +   Q ++       +TI
Sbjct: 354 VLENHSRVDDAAARIGGEEFALLLVNTAEKDALAIAERIRLAVNAEQNHLPE----RMTI 409

Query: 221 SAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S G+   R       T + RAD A+Y AK SGRNRVV +
Sbjct: 410 SMGLYTTRDRSVNAETCVERADAAMYEAKNSGRNRVVVW 448


>gi|322419673|ref|YP_004198896.1| GAF sensor-containing diguanylate cyclase [Geobacter sp. M18]
 gi|320126060|gb|ADW13620.1| diguanylate cyclase with GAF sensor [Geobacter sp. M18]
          Length = 739

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 86/174 (49%), Gaps = 9/174 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           E+     R  QLS  D L+GL N     S L     +       L+++F D+D+FK  ND
Sbjct: 530 EVLEESERFEQLSVTDALTGLYNRRFLKSRLEEELNRSIRQGLNLTVIFIDLDFFKNFND 589

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+ +   +D +         V R GGEEF A   G+S+ EA I+A  +R  IE
Sbjct: 590 LCGHLAGDEALKITADIIKASLREMDIVARYGGEEFCAVLPGTSKAEAMIVAERIRSEIE 649

Query: 205 NSQINISSG-PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             +       P + +T S GIA         +T+++ +D ALY AK SGRNR+V
Sbjct: 650 KEKFPGEKDIPQMRLTASLGIASFPEDGRTFTTLVHSSDVALYEAKASGRNRIV 703


>gi|323492449|ref|ZP_08097597.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
 gi|323313236|gb|EGA66352.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
          Length = 433

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 96/175 (54%), Gaps = 15/175 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           LKE  + +   ++L+  D L+G +N  +    L S         ++LS+++ DID+FK +
Sbjct: 265 LKEQNVHF---AELANRDALTGAMNRHSIRDWLESNYQGQNTQAKRLSVMYLDIDHFKVV 321

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH +GD ++   +  ++        + R GGEEF     G + +EAA LA  +R  
Sbjct: 322 NDKYGHAMGDDILREFTMVVLSSLSASERLVRWGGEEFVVFCPGRNSEEAAELAEKVRHR 381

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +E S + +   P   +T S G+A    +E  + ++ RAD+ALY+AK+ GRNRVV 
Sbjct: 382 VE-SHLWVHGDP---LTTSIGVAS-LGEERTNEMLVRADEALYMAKREGRNRVVV 431


>gi|323187181|gb|EFZ72495.1| hypothetical protein ECRN5871_4564 [Escherichia coli RN587/1]
          Length = 315

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 100/190 (52%), Gaps = 10/190 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129
           ++ I  I +S  +  I+ S++K++ +  +    L+++   SGL  + A  S      + L
Sbjct: 120 TMAICPIMVSFSVAAIN-SLMKQVALRAD-FDFLTQVYSRSGL--YEALKSPSLKQTQHL 175

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DIDYFK INDN+GH  GDKV++  +  +  + G    V R+GGEEFA A    + 
Sbjct: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFAQHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-----EPISTIIYRADQAL 244
            +  ++A  +RK +E          ++++T+S G+   C       +  + ++  AD  L
Sbjct: 236 VDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSIGVGSGCASYRTLTDDFNKLMVEADTCL 294

Query: 245 YVAKKSGRNR 254
           Y +KK GRNR
Sbjct: 295 YRSKKDGRNR 304


>gi|257091769|ref|YP_003165410.1| response regulator receiver modulated diguanylate cyclase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257044293|gb|ACV33481.1| response regulator receiver modulated diguanylate cyclase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 632

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 9/176 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL  S  R+   +  D L+ L N  A + SL  +        + ++ +  D+D+FK +ND
Sbjct: 451 ELATSNRRLEHAAMTDLLTDLPNRRAGMESLARFWSASMRTGQPVAALMIDVDFFKSVND 510

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD+V+  ++  +         V R+GGEEF      +  + A + A  LR++++
Sbjct: 511 RHGHAVGDRVLQEVARAIQSAARKDDSVSRIGGEEFLLVCHDADPRAALLAAERLRRMVK 570

Query: 205 NSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +I++  G  I +++S G+A R    E    ++  AD+ALY AK +GR+RV  F+
Sbjct: 571 ALKISV-GGVDIQVSVSVGVASREAGMESEDDMLRAADKALYAAKNAGRDRVCLFA 625


>gi|261415029|ref|YP_003248712.1| diguanylate cyclase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261371485|gb|ACX74230.1| diguanylate cyclase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302327921|gb|ADL27122.1| HAMP/GGDEF domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 566

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 90/184 (48%), Gaps = 24/184 (13%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +  ++  +SR D L+ L N           +     + +  SI+F DID+FK +ND
Sbjct: 380 ELEQANKKLDLISRTDELTQLPNRRDMHRTIEKEVDRANRFKKAFSIIFIDIDHFKDVND 439

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD V+  ++  +  +      + R GGEEF      +  ++AA +A   RK IE
Sbjct: 440 TYGHAAGDAVLKSVASTIRSLLRKYDVLARYGGEEFLTLLPETELKDAAHVAERFRKQIE 499

Query: 205 NSQINISSGPSIHITISAGI--------AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           N  I    G  I +TI+ G+        AERC        I  AD+ALY  K+ GRNRV+
Sbjct: 500 NQTI-FFGGQEIKVTITLGVAQFDSGLGAERC--------IQLADKALYEGKEHGRNRVI 550

Query: 257 CFSD 260
            ++D
Sbjct: 551 LWTD 554


>gi|323965332|gb|EGB60790.1| diguanylate cyclase domain-containing protein [Escherichia coli
           M863]
 gi|327254699|gb|EGE66315.1| diguanylate cyclase domain protein [Escherichia coli STEC_7v]
          Length = 371

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   +L G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPIIVI-YPMLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVMLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367


>gi|300715158|ref|YP_003739961.1| HmsT protein (Hemin storage system protein) [Erwinia billingiae
           Eb661]
 gi|299060994|emb|CAX58101.1| HmsT protein (Hemin storage system protein) [Erwinia billingiae
           Eb661]
          Length = 366

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 94/179 (52%), Gaps = 7/179 (3%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQIND 144
           ++++L+      S LS +D L+GL N     + L +  E  +    ++  DID FK  ND
Sbjct: 177 LMRQLYEEKETYSDLSMLDPLTGLYNRRGLKNRLENILENHAGSHFVLLLDIDNFKAYND 236

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH +GD+ +A +S  +     +   V R GGEEF       +E  A  L+  +R+ + 
Sbjct: 237 NYGHAMGDQALARVSVAIRDAVRSRDIVTRYGGEEFLVLLTNVNESIARKLSERIRQYVL 296

Query: 205 NSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           N +I    +   + H+TISAG A    +E   T +  AD+ALY+AK  GRN ++ F DI
Sbjct: 297 NLEIPHLFNDRVATHVTISAGFAPLI-EEDFDTALANADRALYLAKGRGRNTILSFEDI 354


>gi|167629225|ref|YP_001679724.1| hypothetical protein HM1_0848 [Heliobacterium modesticaldum Ice1]
 gi|167591965|gb|ABZ83713.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
          Length = 999

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 77/253 (30%), Positives = 112/253 (44%), Gaps = 31/253 (12%)

Query: 14  CHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI 73
           CHE N +  S      YF    S+    V     +   Y G T F+  +   V    L +
Sbjct: 766 CHEVNADQGS------YFCTNLSVGGQVV----GVLHLYSGATGFFNDQTARVVRSLLAL 815

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------N 126
            + TIS +             I +NR  +LS ID L+GL N      +L +         
Sbjct: 816 AAPTISNMR-----------LIDHNR--RLSLIDPLTGLHNRRYLEQTLENLLVRSRETE 862

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
               ++  DID FK  ND FGH  GDK +  ++  +           R GGEE     +G
Sbjct: 863 RPFCLIMADIDQFKGFNDTFGHDAGDKALRMVAANVRNCLREEDIAVRFGGEEITVILMG 922

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245
            S++ A  +A+ +RK IE + I I  G   +IT+S G++      + +  +I RAD ALY
Sbjct: 923 VSKELAVTIADRIRKRIEQTPIEIGDGQLQYITLSMGVSAFPEDGKTLEKLIQRADLALY 982

Query: 246 VAKKSGRNRVVCF 258
            AK+ G+NRV  F
Sbjct: 983 EAKRLGKNRVAAF 995


>gi|326795027|ref|YP_004312847.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326545791|gb|ADZ91011.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 367

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 92/166 (55%), Gaps = 10/166 (6%)

Query: 100 ISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +  L+  D L+GL N         + F  S+ +Y E  ++   D+D+FK+IND +GH  G
Sbjct: 195 LQDLAEKDELTGLSNRRKVLADAVNVFADSIINY-EPCAMAIADLDHFKRINDTYGHDAG 253

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++ +++    + + VGR GGEEF      ++  +A      LR++IE+ +I+  
Sbjct: 254 DTVLKAVASEMLRQLPSEVKVGRYGGEEFIFVMPSTNLNDATSEMEHLREVIESLEISTP 313

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +G  I +TIS G+A           II +AD+ALY AK +GRNRVV
Sbjct: 314 NGIVIPVTISIGVASLDSDTSRYEEIITQADKALYQAKDNGRNRVV 359


>gi|299531035|ref|ZP_07044448.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298720992|gb|EFI61936.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 534

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 87/162 (53%), Gaps = 8/162 (4%)

Query: 105 RIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           + D L+ L N     A +  L + ++  S+V  DID+FK++ND FGH  GD V+  L+ Q
Sbjct: 370 KTDPLTKLGNRRSLEAALQKLEASSQIFSVVSIDIDHFKKVNDTFGHDAGDIVLRDLAKQ 429

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +  V        R+GGEEF      +SE  A  +A  LRK +E +   +  G   HITIS
Sbjct: 430 MKSVSRADDLPCRVGGEEFLIVLPRTSETTAVQVAERLRKQVEAA---VFEGVG-HITIS 485

Query: 222 AGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            G+A   +    I T+I  AD+ LY AK+ GRNRV  +S  E
Sbjct: 486 LGVASWPNSSSDIPTVIKYADEMLYKAKREGRNRVAVYSQSE 527


>gi|163748525|ref|ZP_02155779.1| cyclic nucleotide phosphodiesterase, putative [Shewanella benthica
           KT99]
 gi|161332103|gb|EDQ02780.1| cyclic nucleotide phosphodiesterase, putative [Shewanella benthica
           KT99]
          Length = 651

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 96/171 (56%), Gaps = 13/171 (7%)

Query: 94  FISYNRISQLSRI-------DCLSGLLN--HSAFI--SSLGSYNEKLSIVFFDIDYFKQI 142
           F++Y + +Q S+I       D L+ L N  H+  +   S    ++ ++++ FD D+FK+I
Sbjct: 478 FLAYKQ-AQKSKIFSVLALTDHLTQLANRRHTYAVGEQSFSENHDVMALILFDADHFKKI 536

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           NDNFGH VGDK +  L++    +      VGR+GGEEF      ++ ++A  +A  L   
Sbjct: 537 NDNFGHDVGDKALTLLANISSSLMRKSDLVGRVGGEEFLVILPHTNLEQATEIAERLVDS 596

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           I  + ++      + +TISAG+A R   +  S ++ RAD+ LY+AK SGRN
Sbjct: 597 IAMTDLS-DIAEELTMTISAGVAAREQDKSFSDLLQRADKGLYLAKSSGRN 646


>gi|326793993|ref|YP_004311813.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326544757|gb|ADZ89977.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 373

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 96/177 (54%), Gaps = 9/177 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKLSIVFFDIDYFKQINDNFG 147
           IL+E   S N + + +  D L+ LLN       L +  + +  I+  DID+FKQINDN+G
Sbjct: 190 ILRE---SSNHLEKKAITDELTKLLNRYGMYEKLETPVSRRRHILLMDIDHFKQINDNYG 246

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-S 206
           H  GD  +A ++  +     +     R GGEEF      SS +EA   A   R++  + +
Sbjct: 247 HEAGDLYLAKVAQVITSTVSSEGIAARWGGEEFLVLLSTSSLEEAKHWA---RRVCSDVA 303

Query: 207 QINIS-SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           ++++S  G  +  T+S GI++   ++ I   I +AD ALY+AKK GRNR V   D+E
Sbjct: 304 KLSVSFKGHELKATMSIGISQLGVEDKIHDSISQADAALYMAKKEGRNRYVTAVDLE 360


>gi|319780361|ref|YP_004139837.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166249|gb|ADV09787.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 253

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 92/158 (58%), Gaps = 3/158 (1%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-GSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+++ +  D ++G+LN  +F ++L GS   +++ +++  D D+FK INDNFGH  GD  +
Sbjct: 84  RLAEKASRDDMTGMLNRESFFAALDGSRRKSDRGALLIIDADHFKTINDNFGHLTGDDAL 143

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  +     +   +GR+GGEEF A  +G++EQEA  +A  +R+ +E  +       +
Sbjct: 144 LLIASAIQRGVRSGDVLGRIGGEEFGAFLVGATEQEAKRVAERIRREVELIRFRPVDERT 203

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           I +T+S G      +  +S ++  AD+ LY AK  GRN
Sbjct: 204 IPLTVSIGGTVCGEEASVSELMRAADRRLYQAKHQGRN 241


>gi|289208273|ref|YP_003460339.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           K90mix]
 gi|288943904|gb|ADC71603.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           K90mix]
          Length = 424

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 19/204 (9%)

Query: 70  SLVIISITISLLL---GYIS-----GSILKELFISYNRISQLSRIDCLSGLLNH------ 115
           SL+ +  TI+ +L   G IS     G  + +     + I +++  D L+G+ N       
Sbjct: 225 SLIHLEQTITPVLDDHGKISHYVALGKDVTDRLRMEDEIRRVAHTDWLTGVANRLSLGNT 284

Query: 116 -SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
             A I     Y   LS++ FD+D+FK +ND +GH  GD+V+  L+  +         +GR
Sbjct: 285 LEAEIERSQRYGRPLSLIMFDLDHFKAVNDQYGHEAGDEVLKALAQTVSAELRDADTLGR 344

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
            GGEEF      +    A  LA  LR+ +  S +++   P   +T S G+AE    +   
Sbjct: 345 WGGEEFIIVVPETRLVGATALAEKLRQAV--STMSVPGVPG--VTASFGVAELASGDSAK 400

Query: 235 TIIYRADQALYVAKKSGRNRVVCF 258
            +  RAD+A+Y AK++GR+RVV  
Sbjct: 401 LLARRADEAMYQAKQAGRDRVVAL 424


>gi|78777974|ref|YP_394289.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78498514|gb|ABB45054.1| response regulator receiver modulated diguanylate cyclase
           [Sulfurimonas denitrificans DSM 1251]
          Length = 414

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 86/163 (52%), Gaps = 8/163 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           I+  +  D L+GL N   F +++  Y EK        +I   DID+FK+IND +GH +GD
Sbjct: 250 ITNNANRDFLTGLYNRRYFFNNMYPYFEKALTNGNHFAIAMIDIDFFKKINDTYGHEMGD 309

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           K I  L+D L         V R GGEEF       + Q+A     +LR+ +ENS +++  
Sbjct: 310 KTINKLADILRANTSQDDIVARFGGEEFCIVLKNKTPQQALSHFENLREKVENSFLSLGD 369

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              I  TIS G+     ++ +   I +AD  LY AK++GRNR+
Sbjct: 370 EEKITFTISIGVL-LSPEDTLDESINQADMLLYNAKQNGRNRI 411


>gi|83594720|ref|YP_428472.1| diguanylate cyclase [Rhodospirillum rubrum ATCC 11170]
 gi|83577634|gb|ABC24185.1| Putative diguanylate cyclase (GGDEF domain) [Rhodospirillum rubrum
           ATCC 11170]
          Length = 360

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 90/168 (53%), Gaps = 9/168 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
           +  ++  L++ D L+GL N    + + G           +LS++  D+D+FK IND +GH
Sbjct: 190 AARQLETLAKSDPLTGLANRRGLLDAFGGAVLTRSRAPHRLSLLVLDLDHFKSINDRYGH 249

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+  ++  +  +      + R+GGEEFA     +    A  +A  +RK IE++ +
Sbjct: 250 EAGDGVLCHVAHVIKGMIRANDLIARIGGEEFALLLPDTDLAGAREVAEKIRKAIESTAL 309

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255
            I  G S+ +T+S G+AE   + P  + +   AD  LY AKK+GRNRV
Sbjct: 310 -IGPGGSLSVTVSIGVAELDPQYPDFAALFSSADHRLYQAKKAGRNRV 356


>gi|152969456|ref|YP_001334565.1| hypothetical protein KPN_00899 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954305|gb|ABR76335.1| hypothetical protein KPN_00899 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 350

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 5/162 (3%)

Query: 98  NRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            R+  ++  D L+G  N    +A+++++      L+++  D+DYFK+ ND +GH  GD+ 
Sbjct: 186 QRLESIANQDALTGTANRRALNAYLAAIWQQKTPLALMMIDVDYFKRYNDRYGHQAGDEC 245

Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISS 212
           ++ ++  L + V      V R GGEEF     G S   A  +A  ++ KI E    + +S
Sbjct: 246 LSSVAQVLKMAVRAEGDLVARYGGEEFVVVLPGVSLAHATAIAERIQQKIREAGLPHAAS 305

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +  +T+S GI       PI T+I RAD ALY AK +GRN+
Sbjct: 306 AVASEVTVSIGIVASDGTVPIETLIARADSALYQAKNNGRNQ 347


>gi|88811713|ref|ZP_01126967.1| response regulator [Nitrococcus mobilis Nb-231]
 gi|88791104|gb|EAR22217.1| response regulator [Nitrococcus mobilis Nb-231]
          Length = 499

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 10/170 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++  L   D L+GLLNH+     LG            L+    D+D FK +ND +GHP 
Sbjct: 324 RKLRSLMLTDNLTGLLNHTCTKEQLGKELARAIRRQTPLAFAMVDLDDFKAVNDTYGHPA 383

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQIN 209
           GD+VI  L+           +VGR GGEEFA     S+ ++     +++R      SQI 
Sbjct: 384 GDRVIKTLARLFKQRLRRSDYVGRYGGEEFAVIMPESTAEDGKRTLDEIRIAFGRISQIA 443

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++   +   + SAG+A     +  + ++Y ADQALY AK++GRNR+V + 
Sbjct: 444 LNG--TFQASFSAGVAAFPEIDDSTDLMYWADQALYKAKQTGRNRIVIYE 491


>gi|311696891|gb|ADP99764.1| GGDEF domain membrane protein [marine bacterium HP15]
          Length = 351

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 9/169 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148
           S +R+ ++++ D L+GL N +          ++       LS++  D+D+FKQ+ND  GH
Sbjct: 173 SESRLLKMAQTDALTGLANRARLSDVFEQERKRSLRNGTPLSVLVLDLDHFKQVNDQHGH 232

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD  +  ++  L           RLGGEEFA     ++  +A  +A+ +R  IE+  +
Sbjct: 233 EAGDLALRHVASTLRASLRATDLATRLGGEEFAILLTNTTADQAHRVADKIRGAIESHPV 292

Query: 209 NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                 SI +TIS GIA+       + ++I RADQ LY AK SGRNR++
Sbjct: 293 PYQDQ-SIGLTISGGIAQFGPDGGDLRSLIGRADQYLYHAKDSGRNRII 340


>gi|255026923|ref|ZP_05298909.1| hypothetical protein LmonocytFSL_12406 [Listeria monocytogenes FSL
           J2-003]
          Length = 363

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 94/166 (56%), Gaps = 11/166 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-SYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q + +D L+GL N   F S+   ++N        LS++  DIDYFK++ND +GH VG+
Sbjct: 190 LQQSTILDPLTGLTNFRHFESAFDVAFNHATLKKSNLSVIIIDIDYFKRVNDTYGHLVGN 249

Query: 153 KVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            V++  S  L+ + F     + R+GGEEFA      +  E   LA  +R+ +E   + I 
Sbjct: 250 GVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPIV 309

Query: 212 SGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255
           +  S+ ITISAGIA    +   S   ++  ADQALY AK++GRN+V
Sbjct: 310 ASGSV-ITISAGIANYDGRNYPSANELLNAADQALYNAKRNGRNQV 354


>gi|299535509|ref|ZP_07048830.1| diguanylate cyclase [Lysinibacillus fusiformis ZC1]
 gi|298728709|gb|EFI69263.1| diguanylate cyclase [Lysinibacillus fusiformis ZC1]
          Length = 325

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +LS  D L+GL N   F   L  +        E  S+   DID+FK++ND +GH VGD V
Sbjct: 163 ELSMTDKLTGLKNRRFFQEQLEQHFNRFYETAEPFSLCILDIDHFKKVNDTYGHQVGDDV 222

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  L+  L +       V R GGEEF      +    A  +   +R  +E         P
Sbjct: 223 LVQLAQLLQIQVRLEDIVARYGGEEFMIILPETEIPVAKEIGEKIRHTVEQ-----DGWP 277

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +  +TIS GIA    ++  +T+I +AD+ALY +K+ GRN+V  F +I+
Sbjct: 278 TGSLTISMGIATVTSEDTETTLIKKADKALYESKEHGRNKVTHFHEIK 325


>gi|262193644|ref|YP_003264853.1| diguanylate cyclase [Haliangium ochraceum DSM 14365]
 gi|262076991|gb|ACY12960.1| diguanylate cyclase [Haliangium ochraceum DSM 14365]
          Length = 732

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 96/191 (50%), Gaps = 11/191 (5%)

Query: 81  LLGYISGSILKELF--ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSI 131
           +LG I+  +   L   + Y  +  ++  D L+GL NH  F   L           +  +I
Sbjct: 533 MLGIIANQVAVSLQNGMMYKTMETMATTDGLTGLTNHRTFQDRLVQLLDRAERTRQPAAI 592

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  D+D+FK +ND +GHP+GD+V+  ++  L+          R GGEEFA     +  + 
Sbjct: 593 LLCDVDHFKNVNDTYGHPIGDEVLRQVAGVLLRSVRKIDIPARYGGEEFAVVLEATDLEG 652

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250
           A  LA  +RK +    ++   GP   +T+S GIA         + +I RAD ALY+AK+S
Sbjct: 653 AMNLAERIRKDVAALVVDSDKGP-FQVTMSIGIASFPDDATDRAVLIERADSALYLAKES 711

Query: 251 GRNRVVCFSDI 261
           GRNR + +  +
Sbjct: 712 GRNRCMSYQTL 722


>gi|158422365|ref|YP_001523657.1| putative diguanylate cyclase (DGC) [Azorhizobium caulinodans ORS
           571]
 gi|158329254|dbj|BAF86739.1| putative diguanylate cyclase (DGC) [Azorhizobium caulinodans ORS
           571]
          Length = 566

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 108/217 (49%), Gaps = 14/217 (6%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITI-SLLLGYISGSILKELFISYNR-----ISQLSRI 106
           IG  P   +   L  N  ++ +S  + SLL    S     E+F   +      + +L+  
Sbjct: 342 IGRDPKITMLPRLRGNADVMHLSYALRSLLRRLTSAETRYEMFSRKHEQDVAALKELADT 401

Query: 107 DCLSGLLNHSAFIS----SLGSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GLLN  +F++    +L S +   +L I+  DID+FKQ+ND +GH  GD V+  ++D
Sbjct: 402 DPLTGLLNRRSFLAMADVALDSAHATGQLGILMADIDHFKQVNDTYGHAAGDAVLKHVAD 461

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
             V        + R GGEEF A    +       LA  +R+ +  +++ +    +I +TI
Sbjct: 462 TFVRTLRAHDHLARFGGEEFVALLQDTDIAGMQALAERVREAVAATKV-VFEDQAIAVTI 520

Query: 221 SAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S G A        +  +I RAD ALY AK SGRNR+V
Sbjct: 521 SIGAALAHDQDRDMHKVIERADLALYEAKNSGRNRIV 557


>gi|42784588|ref|NP_981835.1| GGDEF domain-containing protein [Bacillus cereus ATCC 10987]
 gi|42740520|gb|AAS44443.1| GGDEF domain protein [Bacillus cereus ATCC 10987]
          Length = 352

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 104/204 (50%), Gaps = 18/204 (8%)

Query: 65  LVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHSAF 118
           L++++ +V + +  S++ GYI+      +L+  ELF    ++ Q + ID L+GL N   F
Sbjct: 150 LIKDIHIVGLYLVSSIITGYITFISANYVLQSNELF---QKMKQYATIDALTGLGNVRQF 206

Query: 119 -------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  I +    N+ L ++  DID+FK +ND +GHP GD+V+  +   L  V   P  
Sbjct: 207 DLEMNHHIGNKRMKNDSLCLLLIDIDHFKCVNDTYGHPAGDEVLKQIGSILREVSPFPNL 266

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
             R GGEEFA                 +R  +EN    + +G  I IT+S G++   ++E
Sbjct: 267 SFRKGGEEFALLIPKKGLAYGMHTGEKVRTAVENHSFELLNGTKIKITVSVGVS--VYEE 324

Query: 232 PISTIIYRADQALYVAKKSGRNRV 255
                I  AD ALY +K++GRN+V
Sbjct: 325 SPEQFIQAADDALYYSKRNGRNQV 348


>gi|13471467|ref|NP_103033.1| hypothetical protein mll1446 [Mesorhizobium loti MAFF303099]
 gi|14022209|dbj|BAB48819.1| mll1446 [Mesorhizobium loti MAFF303099]
          Length = 263

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 79/156 (50%), Gaps = 8/156 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N   F  +L  Y E+       + ++  D+D+FKQ+ND  GH VGD+V+  ++
Sbjct: 107 DSLTGMQNRRYFDDALKEYLEEFRRIEKPVGLMILDLDHFKQVNDTHGHDVGDEVLRAVA 166

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L  +      V RLGGEEFA           A  A  +RK I N  I +S    + IT
Sbjct: 167 SCLKDMTRYHDVVARLGGEEFAVVTPNMEADLLAKFAERIRKAIANMSI-LSGNVRLKIT 225

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+A    KE       RAD+ LY AK+ GRNRV
Sbjct: 226 TSVGLAVWDRKETAEEFYRRADRQLYEAKRLGRNRV 261


>gi|296448069|ref|ZP_06889972.1| diguanylate cyclase [Methylosinus trichosporium OB3b]
 gi|296254426|gb|EFH01550.1| diguanylate cyclase [Methylosinus trichosporium OB3b]
          Length = 392

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 13/157 (8%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN   F       ++S  +  +  ++V  D+D+FK++ND FGH VGD V+ + +
Sbjct: 225 DQLTGLLNRRGFDLACASRLASAKAGRDPTTVVLLDLDHFKRVNDRFGHAVGDDVLRYFA 284

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HI 218
             L +        GR+GGEEF     G+       +A  +R+    + ++++  P +  I
Sbjct: 285 ALLRLTTPEGALAGRMGGEEFVVFLHGAPLARGRRVAETIRR---AAALHVT--PRLPPI 339

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T+S G+AE    E  S  + RAD+ALY AK  GRNRV
Sbjct: 340 TVSIGVAEIAADETFSHAMRRADEALYRAKTLGRNRV 376


>gi|283777873|ref|YP_003368628.1| diguanylate cyclase [Pirellula staleyi DSM 6068]
 gi|283436326|gb|ADB14768.1| diguanylate cyclase [Pirellula staleyi DSM 6068]
          Length = 352

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 85/176 (48%), Gaps = 8/176 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           I+ S L       N+I   +R D L+GL N  AF       +S    +   L +V  D+D
Sbjct: 112 IAESTLARQASEINQIMNEARTDALTGLANRRAFDDEFARRLSQWKRHGTALMLVLVDVD 171

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK +ND +GH  GD V+  L   L         V R GGEEFA   + S  +  AI   
Sbjct: 172 HFKPVNDQYGHQAGDAVLKQLGKLLSAAVRDTDLVARYGGEEFAILLVDSGIEGGAITIA 231

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +++ I +S      G ++ IT S G+A+    +    +I RAD+ALY AK  GRN
Sbjct: 232 RIQQAIASSTFR-HEGVALRITASFGLAQPSASDDQKQLIARADEALYAAKHGGRN 286


>gi|254481121|ref|ZP_05094367.1| GGDEF domain protein [marine gamma proteobacterium HTCC2148]
 gi|214038916|gb|EEB79577.1| GGDEF domain protein [marine gamma proteobacterium HTCC2148]
          Length = 400

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 102/193 (52%), Gaps = 14/193 (7%)

Query: 77  TISLLLGYISGSIL---KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------N 126
           T+S  LG ++ S+    K+L  +  +++ L+ ID L+GL N     ++L           
Sbjct: 204 TMSQELGDLTASLRDRNKQLRDARRQLTDLANIDELTGLGNRRLVNTALKEEINRARRSG 263

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAAL 185
             LS+V  D+DYFK  ND +GHP GD V+  L++ +          V R GGEEF     
Sbjct: 264 TNLSVVLLDVDYFKNYNDTYGHPAGDTVLQKLANIMTKATSRAGEVVARYGGEEFILLLP 323

Query: 186 GSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPI--STIIYRADQ 242
           G+S   A   AN L++++E   I + +S  +  +T+S G+        +  S +I RAD+
Sbjct: 324 GASHDSAMRTANRLKELVELEAIPHENSSVADVLTVSQGVVTVQPDGDMLPSEVISRADK 383

Query: 243 ALYVAKKSGRNRV 255
           ALY AKK+GR+R+
Sbjct: 384 ALYEAKKTGRDRI 396


>gi|169827553|ref|YP_001697711.1| response regulator receiver domain-containing protein
           [Lysinibacillus sphaericus C3-41]
 gi|168992041|gb|ACA39581.1| response regulator receiver domain protein (CheY-like)
           [Lysinibacillus sphaericus C3-41]
          Length = 589

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 94/196 (47%), Gaps = 13/196 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--------SAFISSLGS 124
           I+  T++  L Y      KEL  +   +  L+  D L+ + N           F  + GS
Sbjct: 385 IMQETLNETLEYKVQERTKELESAKLELEALANTDRLTQIPNRVRLDDVLEKEFEQATGS 444

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
               LSI+  DID+FK +ND FGH VGD V+   +D L         VGR GGEEF    
Sbjct: 445 -GTPLSIILLDIDHFKAVNDEFGHQVGDLVLRHAADLLKNYVRVEDTVGRWGGEEFLVVC 503

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +  ++A  L+ +LR+ +E     +      H T S G+      + I +++ R D+AL
Sbjct: 504 PRTPLKDAVHLSENLRQQLEQHSFPVVH----HKTSSFGVTSFVMGDTIHSLLSRCDKAL 559

Query: 245 YVAKKSGRNRVVCFSD 260
           Y AK+ GRNRV  F D
Sbjct: 560 YKAKEHGRNRVEYFQD 575


>gi|237807058|ref|YP_002891498.1| diguanylate cyclase [Tolumonas auensis DSM 9187]
 gi|237499319|gb|ACQ91912.1| diguanylate cyclase [Tolumonas auensis DSM 9187]
          Length = 557

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 103/215 (47%), Gaps = 20/215 (9%)

Query: 65  LVENLSLVIISITISLLLGYISGSILK----------ELFISYNRISQLSRIDCLSGLLN 114
           L+  L +  I+  I+LLL  I+  I +              +  ++ +LS  D L+GL N
Sbjct: 329 LLRYLRIATIASIIALLLAGIATWIYRINRRLTREIAAREAAEQQLRRLSETDALTGLAN 388

Query: 115 HSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
             AF   L         Y    SIV  DID FK+IND +GHP GD V+   + +L     
Sbjct: 389 RRAFDQQLHKEFQRFLRYRHTFSIVMIDIDLFKRINDTYGHPAGDHVLTEFAWRLRDHIR 448

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS--SGPSIHITISAGIA 225
               + R+GGEEFA     +   EA      L++II  +   +S  +   + IT S GI+
Sbjct: 449 KTDILARIGGEEFAIMLPETYPWEAKKRTLLLQQIISKTPFKLSDTTDTPVMITASFGIS 508

Query: 226 ERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFS 259
                + I+   + RAD ALY AK +GRN+V+ F+
Sbjct: 509 SVAENDLIADAALIRADTALYEAKNNGRNQVILFN 543


>gi|83648643|ref|YP_437078.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83636686|gb|ABC32653.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 538

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 79/159 (49%), Gaps = 8/159 (5%)

Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH       S  I+      E L     DIDYFK+IND  GHPVGD+V+  +S
Sbjct: 380 DSLTGLYNHTHTLNLLSMEINKANQTGEPLCFAMMDIDYFKRINDTHGHPVGDRVLKSMS 439

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         +GR GGEEFA     + E +A  + ND+R+      ++ +   +  +T
Sbjct: 440 LFLKQRLRKTDHIGRYGGEEFAVVLPNTDECDAKNMMNDIRERF-GELMHPTESDTFKVT 498

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            S GIA          +  +AD+ALY AK +GRN V  F
Sbjct: 499 FSCGIAAYQAGNTQQVLAQKADKALYEAKHAGRNCVKVF 537


>gi|299542033|ref|ZP_07052352.1| transmembrane protein [Lysinibacillus fusiformis ZC1]
 gi|298725456|gb|EFI66101.1| transmembrane protein [Lysinibacillus fusiformis ZC1]
          Length = 522

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 85/156 (54%), Gaps = 8/156 (5%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           S +D L+G+ N     S L  +       +I+  D+D+FK +ND +GH VGDKV+ FL+ 
Sbjct: 363 STVDPLTGITNRRTMDSMLAEWLASKVPHAIILLDLDHFKSVNDTYGHAVGDKVLQFLAR 422

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
           Q+  V        R GGEEF      ++ +EA ++A  LRK + ++ ++    P   IT+
Sbjct: 423 QMESVAREGDVCCRYGGEEFVILLPNTTIEEATLVAEQLRKTLADT-VSPCGRP---ITL 478

Query: 221 SAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           SAGIA           +I  AD ALY+AK+ GRN+V
Sbjct: 479 SAGIAAYPAMAHTTEALIEAADDALYLAKQEGRNQV 514


>gi|193222416|emb|CAL63012.2| Conserved hypothetical protein; putative GGDEF domain
           [Herminiimonas arsenicoxydans]
          Length = 362

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 100/181 (55%), Gaps = 18/181 (9%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHS----AFISSLGS---YNEKLSIVFFDIDYFKQIND 144
           E  I+  R+  +   D L+G+ N        +  +G    +   LS ++ D+D+FK++ND
Sbjct: 181 ENVINNERLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGHTLSAMYIDLDFFKKVND 240

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH  GD+V+  ++ ++         +GR GGEEF    + +  + A  +A  +R  I 
Sbjct: 241 NYGHQGGDEVLREVAARIKAELRLSDALGRFGGEEFVVLLIDAGMEAALAVAERMRSSIA 300

Query: 205 NSQINISSGPSIHITISAGIA-----ERCHKEPISTI----IYRADQALYVAKKSGRNRV 255
           N  + +SSG  + +++S G++     ER  K+ ++TI    + +ADQALY+AK+ GRN+V
Sbjct: 301 NRPLVLSSGEQLRLSVSIGVSTLQAIER--KDEVATIAQQLLAKADQALYLAKQGGRNKV 358

Query: 256 V 256
           +
Sbjct: 359 M 359


>gi|127511386|ref|YP_001092583.1| diguanylate cyclase [Shewanella loihica PV-4]
 gi|126636681|gb|ABO22324.1| diguanylate cyclase [Shewanella loihica PV-4]
          Length = 323

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 121/251 (48%), Gaps = 24/251 (9%)

Query: 32  SIFFSIFIATVIFIANIFLFYIG-LTPFYGLEYILVENLSLVIIS------ITISLLLGY 84
           S+F     A + +    ++F  G   P  G    + +N++L+ +S        IS+++  
Sbjct: 75  SVFLLKNRAFISWEQRPYVFKFGNYRPITGRADFMYQNVTLLPLSSLTGQITHISMIIYD 134

Query: 85  ISGSILKELFI--SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFD 135
           ++   + +L +  +  R+  LS+ D L+ L N   +             Y E  ++V FD
Sbjct: 135 VTDVAINKLQLKAANERLEHLSQTDGLTQLHNRRHWQLCMQKEFDRHARYGEPTTLVMFD 194

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK+IND +GH  GD+VI  +S  L          GR GGEEF+     ++ + A   
Sbjct: 195 IDHFKRINDTYGHIAGDRVIQHVSHILRQSLRDTDCAGRYGGEEFSVVLSNTNAEAALHF 254

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKSG 251
           A+ LR+ IE S++   S   + +T+S GI   C    H    +  + +AD ALY AK+ G
Sbjct: 255 ADRLREKIEASELRFESA-ILKVTVSIGI---CGIDEHLSNSAQWLGQADSALYQAKQKG 310

Query: 252 RNRVVCFSDIE 262
           RN  V F+  E
Sbjct: 311 RNCCVIFNPDE 321


>gi|315291820|gb|EFU51172.1| diguanylate cyclase domain protein [Escherichia coli MS 153-1]
          Length = 472

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 6/134 (4%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            + L+++  DIDYFK INDN+GH  GDKV++  +  +  + G    V R+GGEEFA A  
Sbjct: 329 TQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHIQKIVGDKGLVARMGGEEFAVAVP 388

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-----EPISTIIYRA 240
             +  +  ++A  +RK +E          ++++T+S G+   C       +  + ++  A
Sbjct: 389 SVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSIGVGSGCASYRTLTDDFNKLMVEA 447

Query: 241 DQALYVAKKSGRNR 254
           D  LY +KK GRNR
Sbjct: 448 DTCLYRSKKDGRNR 461


>gi|284051603|ref|ZP_06381813.1| GGDEF domain protein [Arthrospira platensis str. Paraca]
 gi|291566315|dbj|BAI88587.1| putative diguanylate cyclase [Arthrospira platensis NIES-39]
          Length = 396

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/181 (38%), Positives = 96/181 (53%), Gaps = 23/181 (12%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEK----LSIVFFDIDYFKQIN 143
           +EL ++  ++ QLS ID L+GLLN     S L    +Y+++    LSI+  DID+FK+IN
Sbjct: 220 RELLVANKKLEQLSTIDELTGLLNRRFLNSRLEQEIAYHQQMGFPLSIMLIDIDHFKKIN 279

Query: 144 DNFGHPVGDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           D FGH  GD V   +A L++QL+ V        R GGEEF      S   +A  +A  LR
Sbjct: 280 DQFGHLAGDYVLQKVAKLTNQLLRVNDLAF---RYGGEEFMVLLPRSEILQALDMAERLR 336

Query: 201 KIIENSQINISSGPS-IHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254
             I     N    PS   IT S G++E     RC    +  ++ +AD ALY AK  GRN+
Sbjct: 337 VSISQLYFNHPDIPSDFQITASFGLSELTKDLRC----LDDLLKQADLALYQAKSQGRNQ 392

Query: 255 V 255
           V
Sbjct: 393 V 393


>gi|46201635|ref|ZP_00054632.2| COG3706: Response regulator containing a CheY-like receiver domain
           and a GGDEF domain [Magnetospirillum magnetotacticum
           MS-1]
          Length = 477

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 88/169 (52%), Gaps = 9/169 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +++  L+  D L+G LN  AF       +     Y   +S++  DID+FKQ+ND  GH V
Sbjct: 309 SQLRHLATTDELTGCLNRRAFFVVAEQELERASRYGGSVSVLMIDIDHFKQVNDRHGHAV 368

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+ +   +  +          GRLGGEEFAA    +    A ++A  LR+ +    + +
Sbjct: 369 GDRALKAATAAIRANLREIDSFGRLGGEEFAAMLPETPLAGALLVAERLREAVAAIVLPL 428

Query: 211 SSGPS-IHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
               + + +T S G+AER  +E  +  I+ RAD ALY AK  GRNRV+ 
Sbjct: 429 GENEAPLRLTTSLGVAERRAEETSLDQILARADTALYRAKAEGRNRVLA 477


>gi|86740196|ref|YP_480596.1| diguanylate cyclase [Frankia sp. CcI3]
 gi|86567058|gb|ABD10867.1| diguanylate cyclase (GGDEF domain) [Frankia sp. CcI3]
          Length = 562

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 73/133 (54%), Gaps = 5/133 (3%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              LS++  DID+FK++ND FGH +GD ++  ++D L         VGR GGEEF     
Sbjct: 422 GRPLSVLLVDIDHFKRVNDRFGHLIGDVILIAVADALRAATRPRDLVGRFGGEEFVVLLT 481

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQ 242
               + AA +A  +R+ +  +   +   P + +T+S G+A   H  P   ++ +I RAD 
Sbjct: 482 EVELENAADVAERIRRQVAGTHCRLEGRPPLSVTVSVGVA--THHGPRGDLAGLIARADS 539

Query: 243 ALYVAKKSGRNRV 255
           ALY AK  GRNRV
Sbjct: 540 ALYRAKADGRNRV 552


>gi|325109040|ref|YP_004270108.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Planctomyces brasiliensis DSM 5305]
 gi|324969308|gb|ADY60086.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Planctomyces brasiliensis DSM 5305]
          Length = 702

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 12/170 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK---------LSIVFFDIDYFKQINDNFGHPVGD 152
           Q SR D L+G+ N     + L +  ++          S+++ DID+FK INDN+GH VGD
Sbjct: 403 QASR-DALTGIANRGELENQLANIMDRYLADPQGSIFSVIYLDIDHFKSINDNYGHAVGD 461

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  L+  L     +     R GGEEF          +AA  A   R  +E +++    
Sbjct: 462 EVLVELAKLLRQEAYSNELAARYGGEEFVVLCPELELMQAAGRAERFR--LEIAKLRFKG 519

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            P + IT S G+A+   +E + +++ RAD+ALY +KK+GRNR       E
Sbjct: 520 APDLRITSSFGVAQIESQEKLDSVLKRADKALYESKKNGRNRTTVLRREE 569


>gi|209885875|ref|YP_002289732.1| ggdef domain protein [Oligotropha carboxidovorans OM5]
 gi|209874071|gb|ACI93867.1| ggdef domain protein [Oligotropha carboxidovorans OM5]
          Length = 541

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 7/180 (3%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEK-LSIVFFDIDYFK 140
           S+ ++  I  +R++ L+  D L  L N   FI       ++   + + L+++  D D FK
Sbjct: 322 SLFEDRRILIDRLTHLASWDSLVELPNRRHFIEVAEQEIAIARRDSRNLALLILDADNFK 381

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GH  GD  +  ++     V   P   GR+GGEEFA      S  EA+  A  LR
Sbjct: 382 TLNDQWGHAAGDAALRMIALACASVSPRPDCAGRIGGEEFAMLLPAMSVAEASDFAEMLR 441

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             I  + + I+   +I++T+S G++       +  ++  ADQALY AK  GRN+VV   D
Sbjct: 442 AQIAATPVQIAPDTTIYVTVSIGVSAFGAHADLCAMMRAADQALYTAKGRGRNKVVQADD 501


>gi|83945515|ref|ZP_00957862.1| stalked-cell differentiation controlling protein [Oceanicaulis
           alexandrii HTCC2633]
 gi|83851091|gb|EAP88949.1| stalked-cell differentiation controlling protein [Oceanicaulis
           alexandrii HTCC2633]
          Length = 450

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 16/167 (9%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           ++S  D L+GL N    +S L        + +E L+    DID+FK+IND +GH  GD+V
Sbjct: 281 EMSVRDALTGLFNRRYTVSRLRQALDGLRANHEPLTTALIDIDHFKRINDTWGHNAGDQV 340

Query: 155 I----AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           +    A L++QL  +       GR GGEEF      ++ +EA       R  +  + + +
Sbjct: 341 LKEICARLNEQLRAID----IAGRYGGEEFLVVFSNTTAREACDAMERARLAVCATPVTL 396

Query: 211 -SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +G  I++T+S G+AE    + +  +I RAD ALY AK+SGRNRV+
Sbjct: 397 RETGDIINVTMSVGVAEAFMDDSVEALIERADTALYDAKRSGRNRVI 443


>gi|134096058|ref|YP_001101133.1| hypothetical protein HEAR2898 [Herminiimonas arsenicoxydans]
          Length = 314

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 100/181 (55%), Gaps = 18/181 (9%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHS----AFISSLGS---YNEKLSIVFFDIDYFKQIND 144
           E  I+  R+  +   D L+G+ N        +  +G    +   LS ++ D+D+FK++ND
Sbjct: 133 ENVINNERLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGHTLSAMYIDLDFFKKVND 192

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH  GD+V+  ++ ++         +GR GGEEF    + +  + A  +A  +R  I 
Sbjct: 193 NYGHQGGDEVLREVAARIKAELRLSDALGRFGGEEFVVLLIDAGMEAALAVAERMRSSIA 252

Query: 205 NSQINISSGPSIHITISAGIA-----ERCHKEPISTI----IYRADQALYVAKKSGRNRV 255
           N  + +SSG  + +++S G++     ER  K+ ++TI    + +ADQALY+AK+ GRN+V
Sbjct: 253 NRPLVLSSGEQLRLSVSIGVSTLQAIER--KDEVATIAQQLLAKADQALYLAKQGGRNKV 310

Query: 256 V 256
           +
Sbjct: 311 M 311


>gi|88800236|ref|ZP_01115804.1| hypothetical protein MED297_14102 [Reinekea sp. MED297]
 gi|88777082|gb|EAR08289.1| hypothetical protein MED297_14102 [Reinekea sp. MED297]
          Length = 606

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 90/179 (50%), Gaps = 11/179 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL   + R+  LS+ D L+GL N         A        +  LS++  DID+FK IN
Sbjct: 424 RELEAKHQRVKLLSQTDHLTGLYNRQSLDNRTKALFEQAEQSDSHLSLIMMDIDHFKPIN 483

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH VGD+ +  ++  L  +       + R GGEEF      +S + A  L  D+   
Sbjct: 484 DRFGHQVGDECLVHVASFLRGLNLRHKDLIARFGGEEFTIVLPDTSIEHAQHLIEDVCTR 543

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFS 259
           +    ++  S   I +T S GIAER   +  S   +I +ADQALY AK++GRNRV  + 
Sbjct: 544 LSKETVS-GSHYEIQLTASFGIAERVISQAPSYEELIQKADQALYQAKQNGRNRVEVYQ 601


>gi|311279747|ref|YP_003941978.1| diguanylate cyclase [Enterobacter cloacae SCF1]
 gi|308748942|gb|ADO48694.1| diguanylate cyclase [Enterobacter cloacae SCF1]
          Length = 377

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 122/264 (46%), Gaps = 38/264 (14%)

Query: 24  PHTFMIYFSIFFSIFIATVI---FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL 80
           P T ++ F+   S++    I   FIA I+L  + ++ FY        NL+ VI +    L
Sbjct: 124 PFTALLLFTALISLYFDPRILLGFIAPIWLTVLVMSLFY------TANLT-VINAFMWVL 176

Query: 81  LLGYISG--SILKELFISYNRISQ-----------LSRIDCLSGLLNHSAFISSLGSYNE 127
           L G I     +L   F+   R  Q           L+  D L+G+ N  AF S +     
Sbjct: 177 LAGLIESGRQMLNRWFLLALRHQQENADLIDQLELLANRDPLTGIANRRAFESRMDQEIA 236

Query: 128 K-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL----VVVFGTPMFVGRLG 176
           +        +++  D+D+FK  ND +GH  GD+ +  ++  L    + V G P   GR G
Sbjct: 237 RHKREGGTFTLIMLDVDHFKLYNDYYGHQRGDRCLVTIAQCLARAALPVTGIP---GRFG 293

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPIST 235
           GEEF      S+  EA  +A D+ + +    I   + P +  +T+S G+A         T
Sbjct: 294 GEEFVLLLPRSTPSEALDVARDIAQEMRLQNIEHLTSPVLPRVTVSLGVASWSEGMKART 353

Query: 236 IIYRADQALYVAKKSGRNRVVCFS 259
           +I+ AD+ALY AK+ GRNR V F 
Sbjct: 354 LIHNADKALYQAKQQGRNRWVLFE 377


>gi|300113126|ref|YP_003759701.1| response regulator receiver modulated diguanylate cyclase
           [Nitrosococcus watsonii C-113]
 gi|299539063|gb|ADJ27380.1| response regulator receiver modulated diguanylate cyclase
           [Nitrosococcus watsonii C-113]
          Length = 641

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 93/181 (51%), Gaps = 15/181 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFFDIDYFKQI 142
           L +L ++  R+ Q++  D L+GL N    +  +      Y       S +  D+DYFKQ+
Sbjct: 459 LADLAVANRRLGQMAMTDSLTGLPNRRYAMERMEQAWAEYERNQNPFSCLVIDLDYFKQV 518

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD V+  +++       +   + RLGGEEF A    ++  EA  +A  LR+ 
Sbjct: 519 NDQYGHEAGDGVLREIANVFRSSARSSDIICRLGGEEFLAVCPDTASAEAFHVAERLRRA 578

Query: 203 IEN---SQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCF 258
           +E    + +N +   SI I ++  + E  H       +YR ADQALY AK+SGRNRV   
Sbjct: 579 VEEHRWTSLNSTGALSISIGLATSLEEMQH----WNDLYRLADQALYQAKRSGRNRVCMA 634

Query: 259 S 259
           S
Sbjct: 635 S 635


>gi|228936701|ref|ZP_04099492.1| GGDEF domain protein [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228822910|gb|EEM68751.1| GGDEF domain protein [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 351

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 24/233 (10%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91
           S+F   + F  N++  +I   P      +L +++S+V++ +  S +  YI+      +L+
Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLS----MLFKDMSIVVLYLVCSSVAAYITFISANYVLQ 179

Query: 92  --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
             ELF    ++ Q + ID L+GL N   F       I +    N  L ++  DID+FK +
Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSV 236

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GHP GD+V+  +   L  V   P    R GGEEFA             +   +R  
Sbjct: 237 NDTYGHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAA 296

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E     +  G  I IT+S GI+   +++     I  AD ALY +K++GRN+V
Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|146311462|ref|YP_001176536.1| diguanylate cyclase [Enterobacter sp. 638]
 gi|145318338|gb|ABP60485.1| diguanylate cyclase [Enterobacter sp. 638]
          Length = 473

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 102/202 (50%), Gaps = 24/202 (11%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEK 128
           S+ I L L +   S+ +   I Y +  Q S  D L+ L N S F  SL       + +  
Sbjct: 261 SLLIILTLLHDVFSLYRNSHIKYQQSYQNSIRDALTRLYNRSYFYESLNQALGKITDSHP 320

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +S++  D+DYFK+INDN+GH  GDKV+ F+++ L+          R+GGEEF      + 
Sbjct: 321 VSVIVCDLDYFKRINDNYGHLQGDKVLQFVANLLMDSVRPQDITARIGGEEFVLLLSNTH 380

Query: 189 EQEAAILANDLRKIIEN-SQINISSGPSIHITISAGI---------AERCHKEPISTIIY 238
            + A ++A  +R  + +  +I         +TIS GI         AE C        + 
Sbjct: 381 SEAARLVAERIRLSLSSFDRITTEGMLPESVTISMGIYTATTLPVTAEEC--------VE 432

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
           RAD+A+Y AK++GRNRVV + +
Sbjct: 433 RADKAMYEAKETGRNRVVVYQE 454


>gi|316935559|ref|YP_004110541.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
 gi|315603273|gb|ADU45808.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
          Length = 359

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 96/180 (53%), Gaps = 9/180 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
           S + ++  +   + +L+  D ++G+ N   F++           Y   +S +  DIDYFK
Sbjct: 145 SDVTDIVRNAEELERLATTDGMTGVYNRRHFLTLADREWARARRYQRPMSFLMIDIDYFK 204

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND FGH VGD++I  L+            + RLGGEEFA     +   +A ++A  LR
Sbjct: 205 AINDGFGHQVGDEMIVHLARLARDCKRDCDVLARLGGEEFALLLPETDLAQAQVVAERLR 264

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +  + + ++S  SI  T+S G+A      + +S ++  ADQALY AK +GRNRV+C +
Sbjct: 265 REVAANALVVASR-SIPATVSIGVATALPGMDDVSELMKAADQALYDAKHAGRNRVICRA 323


>gi|192362294|ref|YP_001983295.1| YaiC/YhcK/ArdA family protein [Cellvibrio japonicus Ueda107]
 gi|190688459|gb|ACE86137.1| YaiC/YhcK/ArdA family protein [Cellvibrio japonicus Ueda107]
          Length = 330

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 116/246 (47%), Gaps = 19/246 (7%)

Query: 35  FSIFIATVIF-IANIFLFYIGLTPFYGLEYILVENLSLVIISITI----SLLLGYISGSI 89
           F +F+  V+  +A + +  + +  F   E+ L  +  ++  ++ +     L +G I+   
Sbjct: 86  FRLFLRGVVTSLAGLLMGLLVVRSFLHWEFNLSSDPVMIYAALPMLVIYPLAIGSITYRF 145

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQI 142
             +L      +  LSR D L+GL N S       A I+      + L +V  D+D+FK I
Sbjct: 146 AMQLHSQKELLKHLSRTDGLTGLFNRSYWEERVLALINQTQRSGQPLCLVLLDVDHFKMI 205

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD+++  ++  L V       +GR GGEEFA A   +S   A   A  LR+ 
Sbjct: 206 NDTYGHGRGDQILQQIAQCLQVNLREHELLGRYGGEEFALALANTSLPAALATAERLRQA 265

Query: 203 IENSQINISSGPSIH---ITISAGIAERCHKEPISTIIYR--ADQALYVAKKSGRNRVVC 257
           +          P +     +IS G+A    +  IS + ++  ADQALY AK+ GRNR   
Sbjct: 266 VATMNFADEHEPRLAPLCCSISLGLAP--WQPGISFLEWQRAADQALYQAKREGRNRSCI 323

Query: 258 FSDIEN 263
           +   E+
Sbjct: 324 YQPQES 329


>gi|254465270|ref|ZP_05078681.1| response regulator PleD [Rhodobacterales bacterium Y4I]
 gi|206686178|gb|EDZ46660.1| response regulator PleD [Rhodobacterales bacterium Y4I]
          Length = 464

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 90/161 (55%), Gaps = 10/161 (6%)

Query: 106 IDCLSGLLNH---SAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D ++GL N      F+     S  +  EK +++  D+D+FK+IND +GHP GD V+   
Sbjct: 295 LDPMTGLYNRRYAKPFLDRVAHSAAANGEKFAVMLADLDHFKRINDVYGHPAGDAVLIEA 354

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS--QINISSGP-S 215
           + ++  V G    + R+GGEEF A   G+SE EA I A  L   I  +  Q+  ++ P  
Sbjct: 355 ARRMQQVLGPADLLARVGGEEFMAVLPGASEAEAGIAAVALCNAINGTPFQVPGAAEPVK 414

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + I+I A +     ++  + ++ +ADQALY AK +GRN+V 
Sbjct: 415 VTISIGAVMGGGGKEDSTAALVEKADQALYNAKNAGRNQVT 455


>gi|66044408|ref|YP_234249.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63255115|gb|AAY36211.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|330969164|gb|EGH69230.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 418

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 89/167 (53%), Gaps = 11/167 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +++  D L+GL N  +        I ++    +  S++  DID+FK +ND +GHP 
Sbjct: 255 QKLLEIAHSDPLTGLDNRRSAEHTLERQIPAVSMSGKPFSLIICDIDHFKAVNDRYGHPA 314

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VI  ++  L           R GGEEF      SS ++AA LA  +R  +E+  I  
Sbjct: 315 GDSVITSVAAILKQRIRLLDVAARWGGEEFLILVPDSSLKQAAELAERIRNSVESLVIPE 374

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +      +TIS G+AE    E  +++I RAD+ALY AK+ GRNRV C
Sbjct: 375 TGS----VTISLGVAELSAGETAASLIQRADKALYQAKRLGRNRVEC 417


>gi|298530671|ref|ZP_07018073.1| diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510045|gb|EFI33949.1| diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 358

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 106/209 (50%), Gaps = 32/209 (15%)

Query: 81  LLGYISGSILKELFISYNR-----------ISQLSRIDCLSG-LLNHSAFISSLGSYNE- 127
           ++GYI G+I KE+     +           +   +R D L G L N S F   + S  E 
Sbjct: 154 IIGYIRGTI-KEIVTQARKEADSWENKARTLEHYARYDHLLGSLYNRSWFDEKIYSLTEQ 212

Query: 128 ------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS----DQLVVVFGTPMFVGRLGG 177
                 +L+++  D+D+FK IND++GH VGD V+  L+    +   V  G P    R GG
Sbjct: 213 ALENNARLALLMIDVDHFKSINDSWGHQVGDDVLKALAKIIKEHAEVGSGYPC---RYGG 269

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIEN-----SQINISSGPSIHITISAGIAERCHKEP 232
           EE       + EQ A + A +LR+ ++       + + S G SI+ T+S G+AE      
Sbjct: 270 EELCIIFKDTDEQLAGVQAEELRREVQGYNFIPRKKDGSLGDSINFTVSIGVAELQKDWD 329

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              +I  AD+ALY AK+SGRNR + FS++
Sbjct: 330 AGMLIGAADKALYHAKESGRNRAILFSEL 358


>gi|54308933|ref|YP_129953.1| sensory box/GGDEF family protein [Photobacterium profundum SS9]
 gi|46913363|emb|CAG20151.1| hypothetical sensory box/GGDEF family protein [Photobacterium
           profundum SS9]
          Length = 326

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 9/172 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGH 148
           S  +++ LS  D L+ L N   + + L    E+        ++V FDID+FK++ND FGH
Sbjct: 146 SNKQLTHLSMTDRLTQLYNRGHWETCLAEEFERCRQTQTPSTLVMFDIDHFKKVNDTFGH 205

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD VI  +S+ L          GR GGEEF      +S +        LR+ IE +++
Sbjct: 206 VAGDGVIRIVSNVLRRTKRQSDIAGRYGGEEFGVILPYTSSEMGQYFTERLRQRIEQARV 265

Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           N+    SI++TIS G+ E   +       +  AD+ALY++K+SGRN+   F 
Sbjct: 266 NVDV-RSINVTISLGVCEWYPELRNYEQWLEHADKALYISKQSGRNQSTVFE 316


>gi|323978304|gb|EGB73390.1| GGDEF domain-containing protein [Escherichia coli TW10509]
          Length = 472

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWLQ-KTLYLTVSI 424

Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254
           G+   C       +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|288935188|ref|YP_003439247.1| diguanylate cyclase [Klebsiella variicola At-22]
 gi|288889897|gb|ADC58215.1| diguanylate cyclase [Klebsiella variicola At-22]
          Length = 453

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 83/159 (52%), Gaps = 11/159 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+ L N S F  +L     K      LS++  D+D+FK+INDN+GH  GDKVI F + 
Sbjct: 294 DPLTRLYNRSFFYDTLNQQLAKVNPQHPLSVIISDLDHFKRINDNYGHVAGDKVIQFAAS 353

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            L           R+GGEEFA   + ++E++A  +A  +R  +   Q  +       +TI
Sbjct: 354 VLENHSRADDAAARIGGEEFALLLVNTAEKDALAIAERIRLAVNAEQHPLPE----RMTI 409

Query: 221 SAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S G+   R       T + RAD A+Y AK SGRNRVV +
Sbjct: 410 SMGLYTTRDRNVSAETCVERADAAMYEAKNSGRNRVVVW 448


>gi|192291678|ref|YP_001992283.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           TIE-1]
 gi|192285427|gb|ACF01808.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           TIE-1]
          Length = 883

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 60/165 (36%), Positives = 89/165 (53%), Gaps = 13/165 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHP 149
           S +RI  L+  D L+GL N S+F   LG         ++L++++ DID FK +ND  GHP
Sbjct: 442 SDSRIHHLAHYDDLTGLPNRSSFRKHLGEALNLIEPGDQLALLYIDIDEFKIVNDTLGHP 501

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE--QEAAILANDLRKIIENSQ 207
           VGD+++  L+D+L    G   +V RLGG+EFA     +S+  +  A L   LR  I+ + 
Sbjct: 502 VGDQLLQALADRLRNCVGPDDYVARLGGDEFAVVMADASDIREFVAKLQATLRDSIDCAG 561

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             +S   SI I ++       H   +  +I +AD ALY AK  GR
Sbjct: 562 QVLSPDASIGIALAPD-----HSCEVDDLIAKADLALYAAKAEGR 601


>gi|149374583|ref|ZP_01892357.1| diguanylate cyclase [Marinobacter algicola DG893]
 gi|149361286|gb|EDM49736.1| diguanylate cyclase [Marinobacter algicola DG893]
          Length = 372

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 84/182 (46%), Gaps = 16/182 (8%)

Query: 86  SGSILKE----LFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFF 134
           +G++L+E     F     +   +  D L GL N        SA  +    Y   L+I+  
Sbjct: 189 AGTLLRERSWSAFARAETLHHWANTDPLCGLANRRGADRFLSAEAAQADRYQRPLTIILI 248

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID FK IND++GH VGD VI   +  L           R GG+EF  A  G   + A  
Sbjct: 249 DIDEFKSINDDYGHEVGDAVIREFAAILSKTVREVDLAARWGGDEFLVATPGVDLRSARH 308

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            A   R+ IE + I       + +T + GIAE    + I   I RAD  LY AK +GRNR
Sbjct: 309 AAQRCRRAIERAPI-----AGVSVTATVGIAEYLPGQGIEDAISRADAMLYRAKAAGRNR 363

Query: 255 VV 256
           V+
Sbjct: 364 VI 365


>gi|39936022|ref|NP_948298.1| putative diguanylate cyclase/phosphodiesterase [Rhodopseudomonas
           palustris CGA009]
 gi|39649876|emb|CAE28398.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
           [Rhodopseudomonas palustris CGA009]
          Length = 882

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 60/165 (36%), Positives = 89/165 (53%), Gaps = 13/165 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHP 149
           S +RI  L+  D L+GL N S+F   LG         ++L++++ DID FK +ND  GHP
Sbjct: 442 SDSRIHHLAHYDDLTGLPNRSSFRKHLGEALNLIEPGDQLALLYIDIDEFKIVNDTLGHP 501

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE--QEAAILANDLRKIIENSQ 207
           VGD+++  L+D+L    G   +V RLGG+EFA     +S+  +  A L   LR  I+ + 
Sbjct: 502 VGDQLLQALADRLRNCVGPDDYVARLGGDEFAVVMADASDIREFVAKLQATLRDSIDCAG 561

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             +S   SI I ++       H   +  +I +AD ALY AK  GR
Sbjct: 562 QVLSPDASIGIALAPD-----HSCEVDDLIAKADLALYAAKAEGR 601


>gi|16331738|ref|NP_442466.1| hypothetical protein sll0821 [Synechocystis sp. PCC 6803]
 gi|12230444|sp|Q55434|PHY2_SYNY3 RecName: Full=Phytochrome-like protein cph2; AltName:
            Full=Bacteriophytochrome cph2
 gi|1673324|dbj|BAA10536.1| sll0821 [Synechocystis sp. PCC 6803]
          Length = 1276

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 72/236 (30%), Positives = 118/236 (50%), Gaps = 22/236 (9%)

Query: 38   FIATVIFIANIFLFYIG---LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
             +  V+F  N++   I     TP Y  E    E+L L ++ +   + +    G + ++L 
Sbjct: 1036 LVVPVVFNENLWGLLIAHECKTPRYWQE----EDLQL-LMELATQVAIAIHQGELYEQLE 1090

Query: 95   ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
             +  R+ Q+S +D L+ + N   F S+L           E L+++  D+D+FK  NDN+G
Sbjct: 1091 TANIRLQQISSLDALTQVGNRYLFDSTLEREWQRLQRIREPLALLLCDVDFFKGFNDNYG 1150

Query: 148  HPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
            HP GD+ +  ++D +  V   P   V R GGEEFA     +S + A  +   L+  + N 
Sbjct: 1151 HPAGDRCLKKIADAMAKVAKRPTDLVARYGGEEFAIILSETSLEGAINVTEALQVEVANL 1210

Query: 207  QINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             I  +   + H+T+S GIA    ER H  P + ++  AD ALY AK  GRN+ + +
Sbjct: 1211 AIPHTVSGTGHVTLSIGIAVYTPER-HINP-NALVKAADLALYEAKAKGRNQWLAY 1264



 Score = 37.0 bits (84), Expect = 3.2,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 17/168 (10%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL------GSYNEKL-SIVFFDIDYFKQINDNFGHPVGD 152
           I+Q +  D L+ L N   F   L        Y  K+  ++   +D FK+IN++FGH  GD
Sbjct: 427 ITQQTAYDPLTQLPNWIIFNRQLTLALLDALYEGKMVGVLVIAMDRFKRINESFGHKTGD 486

Query: 153 KVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206
            ++  ++D+L     +P+      + R  G+ F       S  QE   L   L    +  
Sbjct: 487 GLLQEVADRLNQKL-SPLAAYSPLLSRWHGDGFTILLTQISDNQEMIPLCERLLSTFQ-- 543

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           +     G  I++T S GI+   +  E   +++  A+ AL  AK  G+N
Sbjct: 544 EPFFLQGQPIYLTASMGISTAPYDGETAESLLKFAEIALTRAKCQGKN 591


>gi|296134290|ref|YP_003641537.1| diguanylate cyclase [Thermincola sp. JR]
 gi|296032868|gb|ADG83636.1| diguanylate cyclase [Thermincola potens JR]
          Length = 379

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 100/201 (49%), Gaps = 16/201 (7%)

Query: 74  ISITISLLLGYISGSILKELFISYNRI--------SQLSRIDCLSGLLNHSAFISSLGSY 125
           + IT  L   Y   S   E   SY  I         QL+  D L+GL N+  F  +L   
Sbjct: 173 MKITSELETAYHQLSASHEQLQSYTEIIEKMNKEMEQLAITDELTGLYNYRYFQIALDKE 232

Query: 126 NEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEE 179
            +K     +S+   DID FK  ND  GH +G++++A ++  +   V G    V R GGEE
Sbjct: 233 LKKNKFSVVSLFMLDIDNFKLFNDRHGHLMGNRMLAEIARVIKENVRGVDTAV-RYGGEE 291

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIY 238
           FA    G    E A LA  +RKI+EN+ I   +G  + +T+S G+A      +  S +I 
Sbjct: 292 FAVIFPGMDSNEVAQLAERIRKIVENTYIKTGAGEPVSVTVSIGVASYPRDAQTKSELIS 351

Query: 239 RADQALYVAKKSGRNRVVCFS 259
            AD ALY AK++GRN+V  F 
Sbjct: 352 HADLALYDAKQAGRNQVCIFK 372


>gi|77360220|ref|YP_339795.1| hypothetical protein PSHAa1277 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875131|emb|CAI86352.1| conserved protein of unknown function [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 394

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 21/179 (11%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S +++  L+  D L+ LLN   F S+           N  L+++  DID+FK++ND +GH
Sbjct: 209 SESKLINLANNDSLTQLLNRRGFFSTCKNIKANTADKNHTLALIMLDIDFFKRVNDKYGH 268

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ + +++  +  +F       R+GGEEFA    G + ++A  LA       E    
Sbjct: 269 DVGDQALKWIAQHISQLFMNIGITARIGGEEFAVLLNGYTLEQANTLA-------EQLSF 321

Query: 209 NISSGP------SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           NI   P      SI +++SAG++    ++  +  ++  AD+ LY+AK++GR++VV   D
Sbjct: 322 NIRQQPFYCNDQSIPLSVSAGVSSTTINQLNLKELLLHADKHLYLAKETGRDKVVSQYD 380


>gi|212639762|ref|YP_002316282.1| Response regulator with a diguanylate cyclase output domain
           [Anoxybacillus flavithermus WK1]
 gi|212561242|gb|ACJ34297.1| Response regulator with a diguanylate cyclase output domain
           [Anoxybacillus flavithermus WK1]
          Length = 421

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 82/162 (50%), Gaps = 13/162 (8%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+   N   F       I     Y    SI+ FDID+FK++ND +GH VGD V+
Sbjct: 262 LATKDPLTKTFNRLKFDEFFTREIHRAKRYKHTFSIILFDIDHFKKVNDTYGHDVGDLVL 321

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             + + +         + R GGEEF   A  +S+  A  LA  LR ++E         P+
Sbjct: 322 VRMCEAISNRLRDCDILARWGGEEFIILAPATSQTGAYRLAEALRHLVETVHF-----PT 376

Query: 216 I-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + H+T S G+ E         ++ RAD+ALY AK++GRNRVV
Sbjct: 377 VGHMTCSFGVCEYEQGMTKEQMVKRADEALYEAKRTGRNRVV 418


>gi|152994649|ref|YP_001339484.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150835573|gb|ABR69549.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 320

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/183 (36%), Positives = 95/183 (51%), Gaps = 20/183 (10%)

Query: 91  KELFISYNR-ISQLSRIDCLSGLLNH-----------SAFISSLGSYNEKLSIVFFDIDY 138
           KE   + NR +  LS++D L+ L N             AF S  GS+    S+V  DIDY
Sbjct: 142 KESLSNANRKLDFLSKMDPLTHLYNRGSVDKKLKSVFDAFASRGGSH----SLVMADIDY 197

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++ND +GHP GD V+  +S  L        FVGR GGEEF      +    A      
Sbjct: 198 FKKVNDQYGHPAGDLVLQAVSKVLGSSIRKTDFVGRYGGEEFVILLPNTDASGALFFCES 257

Query: 199 LRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +RK I + +I  ++   I +T+S G++E  R  K P    + R+D+ALY AK +GRN+ V
Sbjct: 258 VRKKIADLKIK-TANDEISVTMSFGVSEASRSDKVPCD-WLGRSDEALYKAKGNGRNQSV 315

Query: 257 CFS 259
            +S
Sbjct: 316 VYS 318


>gi|310659583|ref|YP_003937304.1| hypothetical protein CLOST_2282 [Clostridium sticklandii DSM 519]
 gi|308826361|emb|CBH22399.1| protein of unknown function [Clostridium sticklandii]
          Length = 346

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/135 (40%), Positives = 84/135 (62%), Gaps = 6/135 (4%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAAL 185
           +LSI+  D+DYFK  ND +GH  GD+ +  ++++L   V   T + V R GGEEF     
Sbjct: 210 ELSIIMIDVDYFKLYNDTYGHMQGDECLKIVANELNNSVKRATDL-VARYGGEEFVVLLP 268

Query: 186 GSSEQEAAILANDLRKIIENSQ-INISSGPSIHITISAGIA--ERCHKEPISTIIYRADQ 242
            + ++EA ++A  ++K IEN + I+  S  S ++T+S G+A   R  K P + +I +AD+
Sbjct: 269 NTGKEEAHMMATSMKKNIENLKIIHELSDVSSYVTVSVGVATFNRDTKLPCNMLIQQADE 328

Query: 243 ALYVAKKSGRNRVVC 257
           ALY+AK  GRN+VV 
Sbjct: 329 ALYLAKDYGRNQVVA 343


>gi|296272342|ref|YP_003654973.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
 gi|296096516|gb|ADG92466.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
          Length = 366

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 85/173 (49%), Gaps = 8/173 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQI 142
           +KEL     R+  L+  D L+ + N  +F         +L   ++ +SI+  DID FK  
Sbjct: 190 IKELEKVNLRLFDLAHTDYLTQIKNRRSFFLHANSLFQNLKKAHKPMSIIMIDIDNFKNF 249

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH +GDKV+   +  +          GRLGGEEF  A           +A D+RKI
Sbjct: 250 NDTYGHEMGDKVLKLFAKTISNYLSDDAIFGRLGGEEFIIALPYKKIDSTIPIAEDIRKI 309

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           IEN  I +     + IT S G+++  +   I  II  AD  LY AK  G+NRV
Sbjct: 310 IENLVIRVPYS-ELFITASFGVSDSTNAYTIDEIIKSADDMLYDAKSKGKNRV 361


>gi|91781076|ref|YP_556283.1| diguanylate cyclase [Burkholderia xenovorans LB400]
 gi|91693736|gb|ABE36933.1| Putative diguanylate cyclase (GGDEF domain) [Burkholderia
           xenovorans LB400]
          Length = 504

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 93/193 (48%), Gaps = 21/193 (10%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           + + L+ +   +  L+  D L+GL N   F++SL             ++++F D+D+FK+
Sbjct: 312 LAERLWAANKELKALALQDALTGLANRRHFVASLDHAMRTAWVDRTAVAVIFIDVDWFKR 371

Query: 142 INDNFGHPVGDKVIA--------FLSDQLVVVFGTPMF----VGRLGGEEFAAAALGSSE 189
            ND +GH  GD  +          L+++L   F T +     V R+GGEEFA     + E
Sbjct: 372 FNDRYGHERGDAALCAVATALTDALTNELTDAFATDLAQRATVARIGGEEFAIVLPDADE 431

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEP-ISTIIYRADQALYVA 247
             A  LA      I    I     P  ++TIS G+A  R   E   S ++ RAD A+Y A
Sbjct: 432 ASATQLAGSALARIRALSIAHEGSPHRNVTISVGVALSRGKAEAGASALLARADAAMYRA 491

Query: 248 KKSGRNRVVCFSD 260
           K+ GR+R V  +D
Sbjct: 492 KREGRDRCVVLAD 504


>gi|331005857|ref|ZP_08329209.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [gamma
           proteobacterium IMCC1989]
 gi|330420301|gb|EGG94615.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [gamma
           proteobacterium IMCC1989]
          Length = 330

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 90/166 (54%), Gaps = 23/166 (13%)

Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +S+ D L+GLLN   + + L         Y+E  S++ FDID+FK++NDN+GHP GD+VI
Sbjct: 158 ISKTDGLTGLLNRKTWENLLEKEYERESRYHENCSLIMFDIDHFKKVNDNYGHPAGDEVI 217

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +D +          GR GGEE+      +    A +LA  +RK        I++ P+
Sbjct: 218 RQTADIIRHSIRKTDIAGRYGGEEYVILLPHTPIDSAYVLAERIRK-------KIAAKPA 270

Query: 216 ------IHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
                 I+ T+S G+A  +   K P + I + ADQALY +K++GRN
Sbjct: 271 CYEDQVINYTVSLGVAAFDPSLKSPTNWIDF-ADQALYQSKQAGRN 315


>gi|328545032|ref|YP_004305141.1| diguanylate cyclase (GGDEF domain) [polymorphum gilvum SL003B-26A1]
 gi|326414774|gb|ADZ71837.1| Putative diguanylate cyclase (GGDEF domain) [Polymorphum gilvum
           SL003B-26A1]
          Length = 412

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 9/167 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
            R+   +R D L+GL N  AF      + ++        S+  FD+D FK +ND FGH  
Sbjct: 220 RRLRIQARRDPLTGLANRRAFFEQAQDWLDRHAATPKTFSVALFDLDDFKSVNDRFGHAA 279

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+++   ++            GRLGGEEF      +    A +LA+ LR     +    
Sbjct: 280 GDEMLTTFAEVCRERLRPGDLAGRLGGEEFVLFLPDTPADAALVLADRLRHAFAQAA-ET 338

Query: 211 SSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +G ++  T SAG+   RC ++ +  ++  AD ALY AK++GRN+VV
Sbjct: 339 RTGGTLAATTSAGVHGGRCGEDDLDRVLAVADAALYSAKRAGRNQVV 385


>gi|153011902|ref|YP_001373115.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188]
 gi|151563790|gb|ABS17286.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188]
          Length = 231

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 109/218 (50%), Gaps = 22/218 (10%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITIS-LLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           IG  P     Y    +L   I  +++  LL+  I+ +  KEL    + +S+ +  D L+G
Sbjct: 15  IGAFPVLSQMYEFQPSLRFGIALMSLGPLLVATINAARQKEL----SDLSRAAYFDVLTG 70

Query: 112 LLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI----AFLSD 160
           LL+ SAF                 L+ +  DID+FKQIND  GH  GDKV+      + D
Sbjct: 71  LLSRSAFRERGQKLLRESIVAGRDLTAMMLDIDHFKQINDQNGHASGDKVLIDFAQLVRD 130

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
           QL          GRLGGEEFA     +S ++A  +A+ +R  ++N+    +    + +T+
Sbjct: 131 QLR----EGDLFGRLGGEEFAILLPNTSSRQAEKIASRVRLRVQNATFTGTDNQPLKVTV 186

Query: 221 SAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S G+ +   C    +  +++ ADQ++Y AK SGRN V+
Sbjct: 187 SMGLVDIADCPSTKLDELLHCADQSMYAAKSSGRNIVI 224


>gi|114563636|ref|YP_751149.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114334929|gb|ABI72311.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella frigidimarina NCIMB 400]
          Length = 406

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/128 (39%), Positives = 75/128 (58%), Gaps = 2/128 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS+   DID+FK+IND +GH VGD+V+     +L   F     V R GGEEF  A  G  
Sbjct: 279 LSVALLDIDFFKKINDTYGHDVGDEVLIEFVQRLENAFAANFTVARFGGEEFVVAFKGLD 338

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
             +A++L N  R+  E++ I  S+G  + ++ S G++   + E +   + RAD+ LY AK
Sbjct: 339 AIKASLLVNKFREQCESNPIMTSAG-DLSVSFSCGVST-VNNETLDHALQRADELLYKAK 396

Query: 249 KSGRNRVV 256
            +GRNRVV
Sbjct: 397 NAGRNRVV 404


>gi|294138971|ref|YP_003554949.1| GGDEF domain-containing protein [Shewanella violacea DSS12]
 gi|293325440|dbj|BAJ00171.1| GGDEF domain protein [Shewanella violacea DSS12]
          Length = 401

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 84/171 (49%), Gaps = 23/171 (13%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+GL +  A  + + S   K S+   DID+FK+ ND +GH VGD+V+  ++ ++  V 
Sbjct: 230 DELTGLASRRALYNLVLSLGRKYSVAMLDIDHFKKFNDTYGHDVGDQVLKLVAAKMAQVS 289

Query: 167 GTPMFVGRLGGEEF--------AAAALG-------SSEQEAAILANDLRKIIENSQINIS 211
           G    V R GGEEF        A   L        S E  + +L  D R    NSQ    
Sbjct: 290 GGGK-VFRYGGEEFTIVFPRKNAQTILDDLEDVRESIEDYSIVLREDKRTKKSNSQAKAR 348

Query: 212 SGPS-------IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              S       + +TIS G+AER   E     + RADQALY AKK GRN++
Sbjct: 349 RSKSKNAGKKTVSVTISIGVAERHSGESFDQALKRADQALYRAKKRGRNQI 399


>gi|293409869|ref|ZP_06653445.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470337|gb|EFF12821.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 472

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 10/165 (6%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR--VVCFSD 260
           G+       R   +  + ++  AD  LY +KK GRNR   +C+ +
Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMCYGE 469


>gi|188997503|ref|YP_001931754.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932570|gb|ACD67200.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 638

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 88/164 (53%), Gaps = 7/164 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            Q S  D L+GL N + ++  +  +  K  I   DIDYFK+IND +GH +GDKV+  +++
Sbjct: 227 KQRSFTDNLTGLYNRN-YLQHIMDF--KYIIALIDIDYFKKINDTYGHAIGDKVLKSVAN 283

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI---IENSQINISSGPSIH 217
            +  +        R GGEEF   A    +Q+  ++ N   +I   IE  +I I+ G  I 
Sbjct: 284 TMKKLTREEDIFIRYGGEEFLLLAKVDRKQDIQVMLNLFERIRSNIEKLKIPITDGDYIK 343

Query: 218 ITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260
            TIS G+    +K+  I+  I +AD ALY AK  GRNR+  + +
Sbjct: 344 TTISIGVYLNTNKDKNINEAIKKADVALYKAKSKGRNRIEIYDE 387


>gi|121997121|ref|YP_001001908.1| PAS/PAC sensor-containing diguanylate cyclase [Halorhodospira
           halophila SL1]
 gi|121588526|gb|ABM61106.1| diguanylate cyclase with PAS/PAC sensor [Halorhodospira halophila
           SL1]
          Length = 454

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 89/172 (51%), Gaps = 16/172 (9%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           L +LF +  +I QL R    + + +H+ F           +++ FD+D+FKQ+ND FGH 
Sbjct: 299 LTDLF-NRAKIQQLLRAAQAAYIRHHTPF-----------AVLLFDVDHFKQVNDRFGHA 346

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++ ++  V      +GR GGEEF   A  + E  A +LA  +R  +E +   
Sbjct: 347 TGDAVLWLMARRIESVLRETDHMGRWGGEEFLILASQTDEAGAEVLAERIRHQVETTAFE 406

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                   +TIS G+A       + ++  RAD+ALY AK  GRNR V +S +
Sbjct: 407 GVGT----VTISLGVAAAEPGTSLESLEQRADRALYAAKHRGRNRTVRYSQL 454


>gi|15606018|ref|NP_213395.1| hypothetical protein aq_563 [Aquifex aeolicus VF5]
 gi|2983209|gb|AAC06808.1| hypothetical protein aq_563 [Aquifex aeolicus VF5]
          Length = 618

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 96/197 (48%), Gaps = 16/197 (8%)

Query: 78  ISLLLGYISGSILK-----ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSY 125
           + LL+ YI G + +     E      ++   S ID L+G  N           ++     
Sbjct: 414 VKLLIPYIKGYLREATPVIESKKLMEKLKMQSYIDGLTGAFNRRFLEEIADKIVAQTLRR 473

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           N  L I+  D+D+FKQ+ND +GH  GD+V+  ++  +        ++ R GGEEF     
Sbjct: 474 NSNLGILMIDVDFFKQVNDTYGHDAGDEVLRQIARVIKDNIRKADYLIRYGGEEFLVLLT 533

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQ 242
              E  A  +A  LRKIIE + I + +  +I  T+S GI+E    C  +    + + AD 
Sbjct: 534 DVKEGYAEKVAEKLRKIIEETPITLPNCQTIRKTVSIGISEFPKDCEGKFWKCVKF-ADV 592

Query: 243 ALYVAKKSGRNRVVCFS 259
           ALY AK+ GRNRVV F 
Sbjct: 593 ALYKAKEEGRNRVVRFK 609


>gi|83313443|ref|YP_423707.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82948284|dbj|BAE53148.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Magnetospirillum magneticum AMB-1]
          Length = 355

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 8/166 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+   N   F    G             +++  DID+FK+IND +GH  GD
Sbjct: 188 LEELASRDSLTQTANRRHFEHLAGLELDHARRMGRSFALLALDIDHFKRINDTWGHAAGD 247

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +   ++   +       +GR+GGEEFA A   +    A ++A  LR  +E   +  + 
Sbjct: 248 EALKAFANACRLSLREYDILGRIGGEEFAVALPNTGPDGARVIAERLRAAVEELVVRPAK 307

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           G    +T+S GIA+ R     + T++ RADQALY AK SGRNRV+ 
Sbjct: 308 GELFDLTVSIGIAQLREGDLTVETMLERADQALYRAKNSGRNRVMA 353


>gi|315126795|ref|YP_004068798.1| hypothetical protein PSM_A1722 [Pseudoalteromonas sp. SM9913]
 gi|315015309|gb|ADT68647.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 392

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 112/204 (54%), Gaps = 17/204 (8%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF- 118
           GL+ +LV +L L   S   +L+L +I+ +  +      +++  L+  D L+ LLN   F 
Sbjct: 183 GLQLLLVSHLFLTTAS---ALILPFIAFANEE------SKLINLANHDPLTQLLNRRGFF 233

Query: 119 -----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                I+     N ++S++  DID FKQ+ND +GH  GD+ I +++  +  +F       
Sbjct: 234 RLCKKITHTAPLNSRVSLIMLDIDLFKQVNDQYGHETGDEAIKWIAQHINELFFEAGITA 293

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-P 232
           R+GGEEFA      +  +A  LA  L + I+       +G SI +++SAG++    ++  
Sbjct: 294 RIGGEEFAIFLNQKNLTQARQLAQKLCRSIDQYPFYF-NGNSIALSVSAGVSSALIRDLN 352

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
           +  ++ +AD+ LY+AK++GRN+VV
Sbjct: 353 MQELLLQADKRLYLAKETGRNKVV 376


>gi|146283894|ref|YP_001174047.1| GGDEF domain-containing protein [Pseudomonas stutzeri A1501]
 gi|145572099|gb|ABP81205.1| GGDEF domain protein [Pseudomonas stutzeri A1501]
          Length = 466

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 90/163 (55%), Gaps = 14/163 (8%)

Query: 104 SRIDCLSGLLNHSA----FISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S+ D L+GL N +A    F ++L     Y   LSIV  DID+FK+IND+FGH +GD+V+ 
Sbjct: 302 SQTDSLTGLANRAALDRRFATALEQARRYRRPLSIVMLDIDHFKRINDDFGHQMGDRVLR 361

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPS 215
             +  L         VGR GGEEF      +S  +A   A    ++ E ++    ++G  
Sbjct: 362 DFAALLDDCLRGSDAVGRWGGEEFLVLCPETSGPQAVQFAE---RLCEQARAFPFATG-- 416

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +  T+SAG+AE    +   +++ RAD ALY AK  GR+R VC+
Sbjct: 417 VSQTLSAGVAELSPSDTPDSLLRRADAALYRAKHEGRDR-VCW 458


>gi|126738872|ref|ZP_01754568.1| hypothetical protein RSK20926_03109 [Roseobacter sp. SK209-2-6]
 gi|126720053|gb|EBA16760.1| hypothetical protein RSK20926_03109 [Roseobacter sp. SK209-2-6]
          Length = 789

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/210 (35%), Positives = 105/210 (50%), Gaps = 14/210 (6%)

Query: 67  ENLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRI----DCLSGLLNH----SA 117
           E+LSL++ S  I    G Y+   +L        R ++ +R     D L+GL N       
Sbjct: 318 EDLSLLVRSGPIRDEHGLYLGTLLLASDHSDQARQAEWARYLAEHDSLTGLPNRRLMEQT 377

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
           F S L    E++SI+  D+D+FK IND  GHP GD ++  ++ +      T +   RLGG
Sbjct: 378 FQSWLQEEAEEVSILLADLDHFKLINDTLGHPAGDALLQVVAQKFKACASTYVLAARLGG 437

Query: 178 EEFAAAALGSSEQEAAILAN-DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           +EFA    G+S  E   L N   R +IE SQ    +G  +H  +SAGIA     +   S 
Sbjct: 438 DEFAILVKGASSLER--LTNIAERLVIEMSQPQEINGQVLHTGMSAGIATLSGPDSKPSE 495

Query: 236 IIYRADQALYVAKKSGRNRVVCF-SDIENN 264
            I RAD ALY AK++GR  V  F  D+E  
Sbjct: 496 GIRRADLALYEAKRAGRGTVEVFHEDLETE 525


>gi|315499758|ref|YP_004088561.1| diguanylate cyclase [Asticcacaulis excentricus CB 48]
 gi|315417770|gb|ADU14410.1| diguanylate cyclase [Asticcacaulis excentricus CB 48]
          Length = 352

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 87/163 (53%), Gaps = 17/163 (10%)

Query: 107 DCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ L N  +F  +L  +      + +++   DID+FK+ ND +GH  GD+V+ +++  
Sbjct: 184 DALTNLANRKSFDEALERHCDSDEGKNITLAVLDIDHFKRFNDTWGHQTGDQVLRYVASV 243

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LANDLR-----KIIENSQINISSGP 214
           L  +   P    R GGEEF  A +  SE  A +  L N+ R     ++++    N   G 
Sbjct: 244 LSRIGRAPRMAARYGGEEF--AMIFPSENMAVVERLLNEARQEIASRVLKRRSTNEDLGT 301

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              ITIS GIAER + E    ++ RAD+ALY +K +GRN V C
Sbjct: 302 ---ITISVGIAERDYGEDAYDLLDRADKALYQSKNNGRNMVTC 341


>gi|206576162|ref|YP_002238199.1| diguanylate cyclase (GGDEF) domain protein [Klebsiella pneumoniae
           342]
 gi|206565220|gb|ACI06996.1| diguanylate cyclase (GGDEF) domain protein [Klebsiella pneumoniae
           342]
          Length = 453

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 83/159 (52%), Gaps = 11/159 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+ L N S F  +L     K      LS++  D+D+FK+INDN+GH  GDKVI F + 
Sbjct: 294 DPLTRLYNRSFFYDTLNQQLAKVNPQHPLSVIISDLDHFKRINDNYGHVAGDKVIQFAAS 353

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            L           R+GGEEFA   + ++E++A  +A  +R  +   Q  +       +TI
Sbjct: 354 VLENHSRVDDAAARIGGEEFALLLVNTAEKDALAIAERIRLAVNAEQHPLPE----RMTI 409

Query: 221 SAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S G+   R       T + RAD A+Y AK SGRNRVV +
Sbjct: 410 SMGLYTTRDRSVSAETCVERADAAMYEAKNSGRNRVVVW 448


>gi|119468870|ref|ZP_01611895.1| hypothetical protein ATW7_03882 [Alteromonadales bacterium TW-7]
 gi|119447522|gb|EAW28789.1| hypothetical protein ATW7_03882 [Alteromonadales bacterium TW-7]
          Length = 302

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 5/159 (3%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +NR++Q   +D L+ + N   F   +    +E  +++  DID+FK IND FGH  GDKV+
Sbjct: 141 HNRLAQEFIVDDLTQVYNRRCFYEYVENETDESYAVIIIDIDHFKSINDTFGHDKGDKVL 200

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              + ++  +F       R+GGEEFA      + ++    A      +  S   I     
Sbjct: 201 KAFASKIDALFEDGNIFARIGGEEFAGYLPNCTLEQMQAFAES----VLASARTIEVTDE 256

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           ++ + S G+A+R   E   +++ RADQALY AK SGRN+
Sbjct: 257 LYTSASIGVAKRFKNESFDSVMKRADQALYKAKNSGRNQ 295


>gi|107102419|ref|ZP_01366337.1| hypothetical protein PaerPA_01003481 [Pseudomonas aeruginosa PACS2]
 gi|218890931|ref|YP_002439797.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|218771156|emb|CAW26921.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
          Length = 525

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 8/161 (4%)

Query: 103 LSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N  +F+        +   +      +  DID+FK IND+ GH  GD+ +
Sbjct: 360 LASTDTLTGLHNRHSFLHQAELMLKAAERFRHPCVALMLDIDHFKNINDSHGHLTGDRAL 419

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +++ L         +GRLGGEEFAA     S  +A  +A  LR  +E  ++N   G  
Sbjct: 420 QRVAETLRQGLREVDLLGRLGGEEFAALLPEVSLDQALDVAERLRAGVEALRVNNPDGEP 479

Query: 216 IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + +T+S G+A  R   + + +++ RAD ALY AK  GRNR 
Sbjct: 480 LRMTVSIGVALRRDAGDDLESLLVRADSALYQAKSGGRNRT 520


>gi|238893927|ref|YP_002918661.1| hypothetical protein KP1_1864 [Klebsiella pneumoniae NTUH-K2044]
 gi|238546243|dbj|BAH62594.1| hypothetical protein KP1_1864 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 379

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 5/162 (3%)

Query: 98  NRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            R+  ++  D L+G  N    +A+++++      L+++  D+DYFK+ ND +GH  GD+ 
Sbjct: 215 QRLESIANQDALTGTANRRALNAYLAAIWQQKTPLALMMIDVDYFKRYNDRYGHQAGDEC 274

Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISS 212
           ++ ++  L + V      V R GGEEF     G S   A  +A  ++ KI E    + +S
Sbjct: 275 LSSVAQVLKMAVRAEGDLVARYGGEEFVVVLPGVSLAHATAIAERIQQKIREAGLPHAAS 334

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +  +T+S GI       PI T+I RAD ALY AK +GRN+
Sbjct: 335 AVASEVTVSIGIVASDGTVPIETLIARADSALYQAKNNGRNQ 376


>gi|85711449|ref|ZP_01042507.1| GGDEF domain protein [Idiomarina baltica OS145]
 gi|85694601|gb|EAQ32541.1| GGDEF domain protein [Idiomarina baltica OS145]
          Length = 364

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 104/212 (49%), Gaps = 11/212 (5%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLS 110
           +Y  + P      + V   +L ++ I    + GY++   L ++ ++++++   +  D L+
Sbjct: 137 YYPAMQPINATAVVGVHIFNLTVVFI----MFGYLALYYLNKVNLTHDQLRFYATTDPLT 192

Query: 111 GLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            L N           + +  +    +S++  D+D+FK +ND  GH VGDKV+   +D L 
Sbjct: 193 KLRNRRHMSELLKRALQNKHAEQRNVSVLLLDLDHFKSVNDTHGHEVGDKVLRITADILR 252

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   V R GGEEF      ++   AA +A  +RK I     +     +I +T S G
Sbjct: 253 DTVRDHDKVSRWGGEEFLVFLPRTNLNHAAQVAERIRKAIAKYPWHTVINENIQLTTSIG 312

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++E    + ++T++ RAD ALY  K++GRN V
Sbjct: 313 VSELKPDDSVNTLVKRADDALYRGKEAGRNWV 344


>gi|120553039|ref|YP_957390.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei
           VT8]
 gi|120322888|gb|ABM17203.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei
           VT8]
          Length = 407

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 84/164 (51%), Gaps = 8/164 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           N +  L+  D L+G+LN           +     YN  L++++ D D+FK+IND +GH  
Sbjct: 228 NELEALATRDSLTGVLNRRECSRVLIEELERARRYNRPLALLWIDFDHFKEINDTWGHAA 287

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  +S  L     +   +GR GGEEF          EA   A  LR+ + N  + +
Sbjct: 288 GDSVLCSISSLLEDSVRSVDTLGRFGGEEFVLILPEMDVAEAEETAERLRQRVCNQPVAL 347

Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
            SG +I +TIS G+A    H + +  +   AD+A+Y AKK GRN
Sbjct: 348 ESGHNIRLTISIGVAVFPDHGDTLDALCAAADKAMYRAKKQGRN 391


>gi|330942545|gb|EGH45127.1| hypothetical protein PSYPI_23427 [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 389

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q + ID L+GL N +A+   L      + E+   L +   D+D+FK+IND +GH  GDKV
Sbjct: 227 QKALIDPLTGLPNRAAWGERLEQEMARWQEEKNSLLVCILDLDHFKRINDGYGHLAGDKV 286

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +++ L        F+ R GGEEF      +S      L ++LR  +E+   +   G 
Sbjct: 287 LKIVANVLSKRLRADDFMARFGGEEFVMLLPATSLAAGLTLLDELRAAVESCPFHF-KGE 345

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT+S G+      E   T I RADQALY AK++GRNR+
Sbjct: 346 RVTITVSIGLTAFRPSEKSDTAIKRADQALYKAKENGRNRI 386


>gi|325981986|ref|YP_004294388.1| response regulator receiver modulated diguanylate cyclase
           [Nitrosomonas sp. AL212]
 gi|325531505|gb|ADZ26226.1| response regulator receiver modulated diguanylate cyclase
           [Nitrosomonas sp. AL212]
          Length = 554

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 81/158 (51%), Gaps = 8/158 (5%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLNH+A    L             LS    DID+FK+IND +GH  GD+VI  L+
Sbjct: 394 DGLTGLLNHTAIKEELAREVIRSSRLKTSLSFAMVDIDFFKKINDTYGHAAGDRVIKSLA 453

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         VGR GGEEFA     +    AA + +++R +  +  +++S      + 
Sbjct: 454 RLLKQRLRETDIVGRYGGEEFAIIMNDTDATSAAKVIDEIRNVF-SRLLHLSHDEEFSVN 512

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            S GIA+  H    +++   AD ALY AK+ GRN+V+ 
Sbjct: 513 FSCGIADLAHFPDAASLSEAADAALYQAKQRGRNKVIV 550


>gi|260557891|ref|ZP_05830104.1| GGDEF family protein [Acinetobacter baumannii ATCC 19606]
 gi|260408682|gb|EEX01987.1| GGDEF family protein [Acinetobacter baumannii ATCC 19606]
          Length = 397

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 130/279 (46%), Gaps = 30/279 (10%)

Query: 13  LCHEKNL-ESFSPHTFMIYF------------SIFFSIFI-ATVIFIANIFLFYIGLTP- 57
           LCH+  L  S SP T + Y              I +S FI AT+I     +L   G  P 
Sbjct: 117 LCHDGYLIGSISPATMVGYVGTIGVGLVLFERKIVYSAFIPATIILAVCTYLSMSGTVPY 176

Query: 58  -----FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR-----ISQLSRID 107
                F  +E+       L  +   I  +L  ++  IL E+ ++  R     I +LS+ID
Sbjct: 177 APLFNFKAMEHAQTNPFWLGSMLFFIMPIL--VACFILFEILLTQWRQRETYIQRLSQID 234

Query: 108 CLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
            L+ +LN  +  + L + +E+    +++  DID+FK+IND +GH  GD+V+  ++  L  
Sbjct: 235 PLTNVLNRRSLNTHLEALHEQRFDYAVILLDIDHFKKINDIYGHHQGDQVLIEIARCLSE 294

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                  +GR GGEEF      +   +A  +A   R+ ++   I  +    IH++ S GI
Sbjct: 295 NLRNEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRQALQELTIFNNQNIQIHVSASFGI 354

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +          +I +ADQALY  K SGRN+V  F  +  
Sbjct: 355 SSSAFANDPYLVIRQADQALYAVKASGRNQVRTFHQLPQ 393


>gi|225850521|ref|YP_002730755.1| diguanylate cyclase [Persephonella marina EX-H1]
 gi|225646526|gb|ACO04712.1| diguanylate cyclase [Persephonella marina EX-H1]
          Length = 415

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 87/160 (54%), Gaps = 8/160 (5%)

Query: 106 IDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+GLLN  A    L S         + LSIV  D+D FK IND +GH VGD V+   
Sbjct: 256 IDHLTGLLNRKAMDFILNSQYQIAKLTGKPLSIVMLDLDDFKNINDRYGHLVGDCVLQNF 315

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           + +L        F+ R GGEEF      + +++A I+  +L + I +S I       I++
Sbjct: 316 AKELQEHLRKSDFIFRYGGEEFLILMPFTEKRDACIVIRNLLEKISDSYICCGEDLYINV 375

Query: 219 TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           T SAGI +   K E +  II +ADQ +Y AK SG+++V+C
Sbjct: 376 TFSAGIEDITSKHESVIDIIKQADQKMYKAKSSGKSKVIC 415


>gi|156740992|ref|YP_001431121.1| diguanylate cyclase with GAF sensor [Roseiflexus castenholzii DSM
           13941]
 gi|156232320|gb|ABU57103.1| diguanylate cyclase with GAF sensor [Roseiflexus castenholzii DSM
           13941]
          Length = 792

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 12/169 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +    +L+  D L+GL N   F       +     Y+  L+++  D+DYFK IND FGH 
Sbjct: 622 FTETQRLATTDHLTGLFNRHHFFALAPRELERARRYHHPLALLVIDVDYFKTINDTFGHS 681

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++ Q+         + R GGEEF A    ++   A  +A  LR  +  + + 
Sbjct: 682 AGDVVLRSVAKQMQRELRDADILARFGGEEFIALLPETNRAGALRVAERLRAAV--AGVP 739

Query: 210 ISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   P + +TIS G A        + + T+I+RAD+ALY+AK  GRN+V
Sbjct: 740 LLREPPVQVTISIGCAVLDSVSEHDRLDTLIHRADRALYIAKSRGRNQV 788


>gi|302875629|ref|YP_003844262.1| diguanylate cyclase with TPR repeats [Clostridium cellulovorans 743B]
 gi|302578486|gb|ADL52498.1| diguanylate cyclase with TPR repeats [Clostridium cellulovorans 743B]
          Length = 1778

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 11/168 (6%)

Query: 95   ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
            I  ++++ ++ ID L+      A  S +        + +E+ S++ FD+D FK IND FG
Sbjct: 1433 IEKHQLAMIASIDKLTKAYTRKALESYMIQQLEHSKNNDEEFSLIIFDVDKFKDINDTFG 1492

Query: 148  HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
            H  GD V++ +   ++         GR GGEEF      +S  EA  +A  LR  +E ++
Sbjct: 1493 HQTGDLVLSSICKVILSSIRKHDICGRYGGEEFIVLLPNTSTNEALEIAERLRIKVEEAK 1552

Query: 208  INISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254
            I    G    +TIS GI+    H   IS ++ RADQALY+AK++GRN+
Sbjct: 1553 I---LGDRRDVTISLGISSYPIHGSDISKLVKRADQALYMAKETGRNK 1597


>gi|307726106|ref|YP_003909319.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1003]
 gi|307586631|gb|ADN60028.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1003]
          Length = 777

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 91/169 (53%), Gaps = 14/169 (8%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFG 147
           F+  +R++QL+  D L+GL N  AF++         +   ++S +F DID FK +ND FG
Sbjct: 189 FLLEDRLAQLAATDPLTGLQNRRAFVTQAERRLADVAQGGQVSAIFLDIDNFKSLNDRFG 248

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENS 206
           H VGD  +  ++  L+        V R+GGEEF  A L S+    A+ LA  LR  I   
Sbjct: 249 HAVGDLALRQVAQVLLDGTSRTDSVSRIGGEEF--AVLSSNGLRGALELAEQLRGAIAAL 306

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +      P  ++T S G+AE    E I  ++ RAD+AL  AK SGRNRV
Sbjct: 307 ER-----PDGNLTASFGVAEHRTGENIMVLLDRADEALLRAKHSGRNRV 350


>gi|261856745|ref|YP_003264028.1| diguanylate cyclase [Halothiobacillus neapolitanus c2]
 gi|261837214|gb|ACX96981.1| diguanylate cyclase [Halothiobacillus neapolitanus c2]
          Length = 460

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 8/156 (5%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N  AF     + +     EK  L +  +D+DYFK++ND FGH  GDK +  + 
Sbjct: 299 DTLTGLPNRLAFDERVALEAARMQREKTPLCLALWDVDYFKRVNDTFGHQAGDKALHVVG 358

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L  +      V R GGEEF      +  Q+A ++   +R+ +  +       P + IT
Sbjct: 359 KTLSQLIRDVDMVARYGGEEFVMVLPKADLQQAFVVLERIREKLAGTAFRFKDTP-LKIT 417

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S G+AE    E I +++ RAD+ALY AK +GRNR 
Sbjct: 418 LSCGVAEFGAGETIESVMARADEALYRAKSNGRNRT 453


>gi|154246349|ref|YP_001417307.1| diguanylate cyclase [Xanthobacter autotrophicus Py2]
 gi|154160434|gb|ABS67650.1| diguanylate cyclase [Xanthobacter autotrophicus Py2]
          Length = 427

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 10/169 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           + + + +  RID L+GL N   F       I+   S+ +  S+V+FDID FK IND FGH
Sbjct: 247 AMDELERQGRIDPLTGLANRRGFDDLAQELIADKTSHPQ--SLVYFDIDRFKGINDGFGH 304

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+A +   +  V        R GGEEF      +S + A   A  +R  +  +  
Sbjct: 305 ATGDLVLATVGGLVARVVMPRDVAARRGGEEFVVLLASTSARSAFHFAERMRAELRRTSF 364

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +   P   +T S G+AER   E ++ +++RADQ +Y AK +GR+ V+ 
Sbjct: 365 PMLP-PGAVVTASFGVAERRPDEDLADLLHRADQLVYAAKHAGRDLVLT 412


>gi|311104033|ref|YP_003976886.1| diguanylate cyclase [Achromobacter xylosoxidans A8]
 gi|310758722|gb|ADP14171.1| diguanylate cyclase, GGDEF domain protein 2 [Achromobacter
           xylosoxidans A8]
          Length = 578

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 92/172 (53%), Gaps = 13/172 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           ++ L+  D L+GLLN  AF        +SL    + L+++ FDID+FK+IND++GH  GD
Sbjct: 407 LAALAETDFLTGLLNRRAFHARAEALCASLDEPGQMLTLIVFDIDHFKRINDSYGHAGGD 466

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++      +     V R+GGEEFA      S  +A+ +A  +R+ +E   + +  
Sbjct: 467 NVLVAVAQACHQTWRRSDIVARIGGEEFAVLCTVRSTAQASAMAQSMRRRVERLSVPLDG 526

Query: 213 GPSIHITISAGI----AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                IT S G+    A+  H   I  ++ +AD+ LY AK SGRN V+  S+
Sbjct: 527 KTIESITSSFGVVCAPADEIHD--IDALLKQADELLYRAKASGRNCVITQSE 576


>gi|260774548|ref|ZP_05883461.1| response regulator receiver modulated diguanylate cyclase [Vibrio
           metschnikovii CIP 69.14]
 gi|260610454|gb|EEX35660.1| response regulator receiver modulated diguanylate cyclase [Vibrio
           metschnikovii CIP 69.14]
          Length = 556

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/171 (38%), Positives = 90/171 (52%), Gaps = 17/171 (9%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKL---------SIVFFDIDYFKQINDNFGHPVG 151
            Q    D L+ LL H++   +L  +N+ L          +V  DID+FK++ND +GH VG
Sbjct: 383 EQAQTQDGLTQLLKHASIKEAL--HNQWLISQRQAQGYCVVMLDIDHFKRVNDTYGHSVG 440

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D VIA     L   F     +GR GGEEF    L    Q+A  + N LR+  + S I  S
Sbjct: 441 DVVIATTGTLLKQRFRRTDKLGRYGGEEFMLILLHCDLQQAEKMVNGLRQ--DFSAIQFS 498

Query: 212 SG-PSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            G      TISAGI  +++   +   T++ RADQALY+AK  GRNR VC +
Sbjct: 499 GGQQQFSCTISAGIVDSQQFPNDDAETLLNRADQALYLAKNRGRNR-VCLA 548


>gi|158424035|ref|YP_001525327.1| REC protein [Azorhizobium caulinodans ORS 571]
 gi|158330924|dbj|BAF88409.1| REC protein [Azorhizobium caulinodans ORS 571]
          Length = 389

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 86/174 (49%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + + ++   + +L+  D ++ LLN   F +          K S++  D+D  + IN+  G
Sbjct: 197 ERMNLAQRELVRLATRDAMTDLLNRRTFFARAEDMIHNRTKASVILLDVDLLRHINETHG 256

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           +P GD V+  ++  +    G      R+GGEEFA    G SE EA      LR  I +  
Sbjct: 257 YPGGDTVVMKVAQSMKRYQG---MAARIGGEEFAVLLPGLSEAEAVEEGERLRWSIADQA 313

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           + + +G  I +T S G+AER   + +   +  AD ALY AK  GRNRVV   +I
Sbjct: 314 VTMPNGQLITVTASLGVAERKPDDNVDEWMESADIALYAAKAGGRNRVVMSEEI 367


>gi|59711596|ref|YP_204372.1| diguanylate cyclase (GGDEF), inhibitor of flagellar motility
           [Vibrio fischeri ES114]
 gi|59479697|gb|AAW85484.1| diguanylate cyclase (GGDEF), inhibitor of flagellar motility
           [Vibrio fischeri ES114]
          Length = 631

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 88/174 (50%), Gaps = 17/174 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIV---------FFDIDYFKQINDNFGH 148
           N + +LS  D L+   N   F +       K  +            DIDYFK+IND +GH
Sbjct: 461 NCLRELSEKDMLTQCWNRRKFEAEFSKLTNKQRLTPEVKMSCLAIIDIDYFKRINDQYGH 520

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGDKVI  ++  L     +  FV R+GGEEFA     +S +EA ++ N LR       I
Sbjct: 521 DVGDKVIKNVARILQTESRSIDFVARIGGEEFAILLPNTSLKEAEVILNRLR-----VAI 575

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +++ G S  +T+S G+ + C  +       RAD ALY +K +GRN++ CF   E
Sbjct: 576 HLADG-SQSVTVSGGVTDIC--DCGEATYKRADLALYESKTAGRNQISCFPSSE 626


>gi|329904066|ref|ZP_08273661.1| hypothetical protein, Putative conserved domain [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327548150|gb|EGF32864.1| hypothetical protein, Putative conserved domain [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 364

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 98/185 (52%), Gaps = 18/185 (9%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHS----AFISSLGSYNEK---LSIVFFDIDYFK 140
           +I  E  I+  R+ ++   D L+G+ N           +G    +   LS ++ DID+FK
Sbjct: 179 AICLENVINNERLKRIGLTDSLTGVNNRRYLERRLQEEIGRTRRQEFPLSCMYIDIDHFK 238

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND+ GH  GD+V+  ++ ++         +GR GGEEF    + +    A ++A  +R
Sbjct: 239 KINDSAGHQGGDEVLQQVALRIKAELRLSDALGRFGGEEFVVLLIDAGLSHALVVAERIR 298

Query: 201 KIIENSQINISSGPSIHITISAGI-----AERCHKEPIST----IIYRADQALYVAKKSG 251
             I N  I +S G ++  T+S G+     A+R H  P+      ++ RAD+ALY AK+SG
Sbjct: 299 ASIANQPIVLSDGAALTATVSIGVTELSAADRVH--PVEKTALQLVARADEALYRAKQSG 356

Query: 252 RNRVV 256
           RNRV+
Sbjct: 357 RNRVI 361


>gi|254788445|ref|YP_003075874.1| ggdef domain-containing protein [Teredinibacter turnerae T7901]
 gi|237684051|gb|ACR11315.1| ggdef domain protein [Teredinibacter turnerae T7901]
          Length = 580

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 81/161 (50%), Gaps = 8/161 (4%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N  A+   +         Y+  L I   DID+FK+INDNFGH  GD+V+  ++
Sbjct: 417 DSLTGLPNREAYNERVYQEYRRFTRYSRPLGIAVCDIDHFKKINDNFGHQTGDRVLKLIA 476

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +        FV R GGEEF      +S  ++  + + +R  +  +       P + IT
Sbjct: 477 RLISTRLRKVDFVARYGGEEFVILLPETSASQSRSVLDKIRAAVAKAAFRFGDDP-VKIT 535

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +S GI+     + I T   RAD+ALY AK  GRNR V  +D
Sbjct: 536 LSFGISAFRSDDTIETAFQRADKALYQAKADGRNRCVVDTD 576


>gi|89093730|ref|ZP_01166677.1| hypothetical protein MED92_11509 [Oceanospirillum sp. MED92]
 gi|89082126|gb|EAR61351.1| hypothetical protein MED92_11509 [Oceanospirillum sp. MED92]
          Length = 811

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 11/178 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           S+L E   +   + +L+  D L+ L N   F+++L +       Y+ +LS+   D+D+FK
Sbjct: 625 SLLIEEQQTEANLHRLATTDELTSLANRRKFLTTLEAELARAKRYHRELSLCMLDLDHFK 684

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND+ GH  GD V+  ++  +  +       GR+GGEEFA     +SE +A ILA  LR
Sbjct: 685 RINDDNGHSAGDSVLVEVAKIMEAMLRESDMAGRIGGEEFAILLPDTSEDDALILAERLR 744

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNRV 255
           + IE+ +I   +  ++ +T S G+A       I   S ++  AD  +Y AK++GRN V
Sbjct: 745 EAIESLEIKYQAH-TLKLTTSIGVASLNQMPEIVQASELLSAADDCMYYAKQNGRNLV 801


>gi|315123539|ref|YP_004065545.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Pseudoalteromonas sp. SM9913]
 gi|315017299|gb|ADT70636.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Pseudoalteromonas sp. SM9913]
          Length = 368

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 7/167 (4%)

Query: 101 SQLSRIDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDK 153
            Q +  D L+G  N     S F+    S  E    LSI+  D+D FKQ+ND++GH  GD 
Sbjct: 197 KQHAHTDQLTGAPNRRFITSHFLKLAASRPEHYLPLSILLIDLDKFKQLNDSYGHDFGDT 256

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+   +  L   F       R GGEEF       +  EA+ILAN  R+ ++N  +     
Sbjct: 257 VLIEFTKLLESQFPATALKARYGGEEFVVILPQQTTLEASILANRFRECVQNHVMLTDKH 316

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + +T S GIA+    +  +  + +ADQ LY AK  GRN+VV   D
Sbjct: 317 QRVSLTCSMGIAQANSVDDYNNALKQADQYLYSAKAQGRNKVVSVHD 363


>gi|237803673|ref|ZP_04591258.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025655|gb|EGI05711.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 796

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 93/184 (50%), Gaps = 18/184 (9%)

Query: 87  GSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
           GS+L   F+S      R+ Q    LS  D L+G  N   F       +  +  +   LSI
Sbjct: 611 GSVLWHGFVSDITDLKRVEQELRELSVTDVLTGAYNRRYFQDRMQAELKRVDRHGGHLSI 670

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK+IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +
Sbjct: 671 IMLDIDHFKRINDRFGHAAGDQVLKAISEKISHRLRSDDVFCRLGGEEFMVVCPGTRGAQ 730

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A  LA  LR+ + N  I    G    +T S GIA     E I  ++ RAD  +Y AK++G
Sbjct: 731 AYQLALSLREELRNQVIE---GVDHVVTASFGIASLRAGEGIDAMLLRADSGVYAAKQAG 787

Query: 252 RNRV 255
           R+RV
Sbjct: 788 RDRV 791


>gi|78777767|ref|YP_394082.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78498307|gb|ABB44847.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM
           1251]
          Length = 516

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 8/164 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R  + S+ D L+ L N  A         +    Y +  ++VFFD+D+FK +ND +GH  G
Sbjct: 351 RAREESKEDFLTKLFNKRALEEFMNIKEAEFERYEKNFTVVFFDLDHFKAVNDTYGHDAG 410

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+   S  L         VGR GGEEF A    +      + A  +R  ++N++    
Sbjct: 411 DAVLVAFSKILKKDARNVDIVGRYGGEEFVAILSETDTDGGIVFAQKIRNKVKNARFMYK 470

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S   I +++SAG++ER     + + +  AD+ALY AK +GR+RV
Sbjct: 471 SN-RIELSVSAGVSERKIHASLQSTMKAADEALYKAKDNGRDRV 513


>gi|238023901|ref|YP_002908133.1| diguanylate cyclase [Burkholderia glumae BGR1]
 gi|237878566|gb|ACR30898.1| Diguanylate cyclase [Burkholderia glumae BGR1]
          Length = 505

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 93/179 (51%), Gaps = 14/179 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
           +L++      ++++LSR D L+GLLN  A  + L    ++       +S++F D D+FKQ
Sbjct: 317 VLRDNLNKQRKLTELSRTDALTGLLNRRALDAVLADEWQRVQRGNTCMSVLFIDADHFKQ 376

Query: 142 INDNFGHPVGDKVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
            ND  GH  GD  + FL+    + V   G      R GGEEF A  + +    A  ++  
Sbjct: 377 YNDIHGHAKGDTALRFLAACISRHVRRHGD--IAARYGGEEFVAVLVNTDTHGALTVSEA 434

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
           +R+ IE +++     P   +T+S G A     +P S   +  +AD ALY AK+SGRNRV
Sbjct: 435 IREDIERNRLADFPEPIPALTVSIGCATGRRGKPASVEALCRQADLALYQAKRSGRNRV 493


>gi|307690161|ref|ZP_07632607.1| diguanylate cyclase with TPR repeats [Clostridium cellulovorans
           743B]
          Length = 1173

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 11/168 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
           I  ++++ ++ ID L+      A  S +        + +E+ S++ FD+D FK IND FG
Sbjct: 828 IEKHQLAMIASIDKLTKAYTRKALESYMIQQLEHSKNNDEEFSLIIFDVDKFKDINDTFG 887

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V++ +   ++         GR GGEEF      +S  EA  +A  LR  +E ++
Sbjct: 888 HQTGDLVLSSICKVILSSIRKHDICGRYGGEEFIVLLPNTSTNEALEIAERLRIKVEEAK 947

Query: 208 INISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254
           I    G    +TIS GI+    H   IS ++ RADQALY+AK++GRN+
Sbjct: 948 I---LGDRRDVTISLGISSYPIHGSDISKLVKRADQALYMAKETGRNK 992


>gi|326317166|ref|YP_004234838.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374002|gb|ADX46271.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 250

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 98/198 (49%), Gaps = 8/198 (4%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           E +L E   LV  S    L +  ++  + +     + R +     D L+G+LN +A I  
Sbjct: 49  ERLLRETRRLVRRSDRAELEMNQLNQQLTELAEQLHYRATH----DPLTGVLNRAAIIEQ 104

Query: 122 LGSYNEKLSI--VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
           +    E  S+  +  DID+FK++ND+FGHPVGD+VI  + D L  V      +GR+GGEE
Sbjct: 105 VNGQFEAGSVALIVLDIDHFKKVNDSFGHPVGDRVIRGVVDCLKSVVPGSAQIGRVGGEE 164

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F      +  Q    +A   R+ IE     +  G    +T S G++              
Sbjct: 165 FTVLLPDAHGQACERVAEAAREAIEGFDFGLPDG--SRVTASFGVSWLPGGCVFDDAYGL 222

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD+ALY AK++GRNRVVC
Sbjct: 223 ADEALYDAKRAGRNRVVC 240


>gi|238762889|ref|ZP_04623857.1| Diguanylate cyclase [Yersinia kristensenii ATCC 33638]
 gi|238698900|gb|EEP91649.1| Diguanylate cyclase [Yersinia kristensenii ATCC 33638]
          Length = 332

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 95/185 (51%), Gaps = 14/185 (7%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIV 132
           LLG ++    K L  +   + ++S  D L+GL N        H+ F  S   Y    +++
Sbjct: 148 LLGLVTYRTAKRLAENKEELLRISVRDGLTGLYNRRHWEHQLHNQF-DSCRRYQHGATLI 206

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQE 191
             DID FK IND FGH VGD+ I  L+++L++       VGR GG+EF A    ++ EQ 
Sbjct: 207 LLDIDNFKSINDTFGHAVGDEAITILAEELLLGLRAIDIVGRYGGDEFGAILPNTTAEQT 266

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250
             IL     K+   + +     P++ + +SAGIA+  H        +  AD ALY+AK +
Sbjct: 267 REILLRIQEKL---ADLVFIQAPTLQLRVSAGIADYRHDMVNYQQWLKAADSALYLAKDN 323

Query: 251 GRNRV 255
           GRNR+
Sbjct: 324 GRNRI 328


>gi|283853435|ref|ZP_06370679.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
 gi|283571155|gb|EFC19171.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
          Length = 530

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 13/168 (7%)

Query: 102 QLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +LS +D L+GL N        +  + +        + +  D+D+FK IND+ GH  GD+V
Sbjct: 360 RLSVLDALTGLYNRRFLFSGGAKLLDASARAGRPCTCLMLDLDHFKAINDSHGHRTGDQV 419

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +A ++ ++         V R GGEEFA    GS  Q  A LA  +R+ + ++   +    
Sbjct: 420 LAHVAGRIAGAVRRSDLVARYGGEEFAVLLTGSDRQHGAELAERIRQALADAPCQVGDA- 478

Query: 215 SIHITISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNRVVC 257
            + +T+S G+AE   +       +  ++ RAD+ALY AK +GR+RV  
Sbjct: 479 YLPVTVSIGVAETRERVQFGESALDDLLARADKALYAAKAAGRDRVAA 526


>gi|221639846|ref|YP_002526108.1| response regulator receiver modulated diguanylate cyclase
           [Rhodobacter sphaeroides KD131]
 gi|221160627|gb|ACM01607.1| Response regulator receiver modulated diguanylate cyclase
           [Rhodobacter sphaeroides KD131]
          Length = 461

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 13/167 (7%)

Query: 102 QLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+ +D L+GL N        +A      + +E+ +++  D+D FK +ND +GH  GD V
Sbjct: 287 RLAVVDPLTGLYNRRYAGAHLAAVAERARASDERFAVMVIDLDRFKSVNDRWGHGAGDAV 346

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSG 213
           +  ++ +L         + R+GGEEF  A       E A  +A  LR+ +E   + +  G
Sbjct: 347 LVAVARRLHANLRPGDLIARIGGEEFLVALPDVPRPEDAHAVAERLREAVEEEPVPLPGG 406

Query: 214 PSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S+ +TIS G+A          EP+  ++ RAD AL +AK +GRN+V
Sbjct: 407 GSLRVTISVGLALSPDGAGRRAEPVDAVVQRADSALLLAKSAGRNQV 453


>gi|229065065|ref|ZP_04200360.1| GGDEF domain protein [Bacillus cereus AH603]
 gi|228716207|gb|EEL67923.1| GGDEF domain protein [Bacillus cereus AH603]
          Length = 343

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 100/203 (49%), Gaps = 12/203 (5%)

Query: 63  YILVENLSLVIISITISLLLGY---ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF- 118
           YIL +++ +V + +   ++  Y   +S S + +    +  +   + ID L+ L N   F 
Sbjct: 139 YILFKDIYVVALYLVCCIVAAYFTFVSASYVLQSNELFQTMKHYATIDALTNLGNVRQFD 198

Query: 119 ------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
                 I S    N+ L ++  DID+FK +ND +GHP GD+V+  L   L+     P  V
Sbjct: 199 FEMNRHIGSKHMKNDSLCLLLIDIDHFKYVNDTYGHPAGDEVLKQLGRILLENAPFPNLV 258

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232
            R GGEEFA             +   +R  +E     + +G  I IT+S G++E  +K+ 
Sbjct: 259 FRKGGEEFALLLPKKRVAFGTRIGEQIRLAVEKHSFQLQNGEKIKITVSVGLSE--YKKS 316

Query: 233 ISTIIYRADQALYVAKKSGRNRV 255
               I  AD ALY +K++GRN+V
Sbjct: 317 PEQFIQSADDALYYSKRNGRNKV 339


>gi|91779794|ref|YP_555002.1| diguanylate cyclase [Burkholderia xenovorans LB400]
 gi|91692454|gb|ABE35652.1| Putative diguanylate cyclase (GGDEF domain) [Burkholderia
           xenovorans LB400]
          Length = 432

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 89/156 (57%), Gaps = 9/156 (5%)

Query: 107 DCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD-Q 161
           D L+GL N   F+      LG+ ++ LS+   DID+FK+IND++GH +GD+V+  L+   
Sbjct: 276 DALTGLPNRREFLEFVDKVLGT-DDVLSVFILDIDFFKKINDSYGHDIGDEVLRVLAKVG 334

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHITI 220
           + +  G+ +F  R GGEEF AA  G+    A   A ++R+ IE      +     I  T+
Sbjct: 335 MSITHGSNLFA-RWGGEEFVAALPGADVGLAHRFAEEVRERIEQQDFEHAWHLKPIPFTV 393

Query: 221 SAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
           S G+  R   E  +  ++ RAD+ALY AKK GRNRV
Sbjct: 394 SIGVVTRAEGERDVDALMKRADRALYRAKKLGRNRV 429


>gi|330502214|ref|YP_004379083.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328916500|gb|AEB57331.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 367

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 85/168 (50%), Gaps = 13/168 (7%)

Query: 101 SQLSR------IDCLSGLLNHSAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           SQL R      +D L+ + N  AF      +L    + L++V  DID+FKQ ND +GHP+
Sbjct: 189 SQLERAHLAATLDSLTRVFNRHAFTRLLERALKDSQQGLALVILDIDHFKQFNDQYGHPL 248

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQIN 209
           GD+V+  +   L  +     F  R GGEEF       S   EA   A  LR  I++ ++ 
Sbjct: 249 GDRVLQHVGQLLRDLLPPEAFAARYGGEEFCVVLRNCSNLDEALDFAEQLRNKIQSLRVK 308

Query: 210 ISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +     +   IT S G A     +   +++ RAD ALY AK++GRN+V
Sbjct: 309 VRRTDQVLDSITASFGCAMAEEDDTFESLLTRADDALYQAKRAGRNQV 356


>gi|242278837|ref|YP_002990966.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
 gi|242121731|gb|ACS79427.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
          Length = 449

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 70/131 (53%), Gaps = 2/131 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS++  DIDYFK IND FGH VGD+ ++  S     V  +    GR GGEEF A    + 
Sbjct: 316 LSVLVLDIDYFKTINDQFGHEVGDRALSSFSKLCSGVLRSSDVFGRFGGEEFLAVLHDTE 375

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
             EA  +A  +R+ +E   +N    P   +T+S G+A     +    II RAD+AL+ AK
Sbjct: 376 IDEAVEVAERMRRTVEKGSVNSDGLP--QLTVSIGVAVDFPGDDFEMIIRRADEALFKAK 433

Query: 249 KSGRNRVVCFS 259
             GRN V  + 
Sbjct: 434 SKGRNLVEVYD 444


>gi|254413714|ref|ZP_05027483.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196179311|gb|EDX74306.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 330

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 95/190 (50%), Gaps = 9/190 (4%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132
           +L G+ S    ++L  + + +S L+  D L+ L N  A        I +  +Y   LS++
Sbjct: 138 ILAGWRSVQFYQKLLQTNDVLSTLALADPLTELNNRRAMEWELPRQIQNARTYITDLSVI 197

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK +ND +GH VGD+V+  LS +L         + R GGEEF      +S +EA
Sbjct: 198 MMDVDHFKSVNDTYGHQVGDRVLQLLSTRLQHNLRLQDTLFRYGGEEFLVVLNQTSGEEA 257

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKS 250
            I+A  LR  I     N+    +I ITIS GIA  +        +++ RAD  L  AK  
Sbjct: 258 KIVAKRLRYQINEQPFNVDGTIAIEITISVGIASLKASDDHKGESLVKRADHNLLRAKAK 317

Query: 251 GRNRVVCFSD 260
           G N+V+   D
Sbjct: 318 GTNQVLYSDD 327


>gi|161521548|ref|YP_001584975.1| diguanylate cyclase [Burkholderia multivorans ATCC 17616]
 gi|189352282|ref|YP_001947909.1| putative diguanylate cyclase [Burkholderia multivorans ATCC 17616]
 gi|160345598|gb|ABX18683.1| diguanylate cyclase [Burkholderia multivorans ATCC 17616]
 gi|189336304|dbj|BAG45373.1| putative diguanylate cyclase [Burkholderia multivorans ATCC 17616]
          Length = 510

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 86/170 (50%), Gaps = 9/170 (5%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFG 147
           ++  ++ +L+R D L+GL N  AF ++L     +       LS++F D+D+FK  ND +G
Sbjct: 331 VAEAKLYRLARTDSLTGLDNRGAFDAALAQEARRAARSGRPLSVLFVDVDHFKAFNDYYG 390

Query: 148 HPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  GD V+  ++             + R GGEEF      +  Q AA +A  +R+ I   
Sbjct: 391 HLAGDDVLRRVAQCASGCLRRATDHIARYGGEEFVVTLPDTDAQGAATVAEGIRRAIAAL 450

Query: 207 QINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
            I     P  H+T S G A   H +   +T++ RAD ALY AK  GRNRV
Sbjct: 451 GIEHVKSPYGHVTASIGTATDPHGRMDAATLLQRADDALYRAKYGGRNRV 500


>gi|16803950|ref|NP_465435.1| hypothetical protein lmo1911 [Listeria monocytogenes EGD-e]
 gi|47096494|ref|ZP_00234086.1| GGDEF domain protein [Listeria monocytogenes str. 1/2a F6854]
 gi|224500261|ref|ZP_03668610.1| hypothetical protein LmonF1_11519 [Listeria monocytogenes Finland
           1988]
 gi|224501290|ref|ZP_03669597.1| hypothetical protein LmonFR_01995 [Listeria monocytogenes FSL
           R2-561]
 gi|254827204|ref|ZP_05231891.1| GGDEF domain-containing protein [Listeria monocytogenes FSL N3-165]
 gi|254831488|ref|ZP_05236143.1| hypothetical protein Lmon1_09043 [Listeria monocytogenes 10403S]
 gi|254899392|ref|ZP_05259316.1| hypothetical protein LmonJ_06249 [Listeria monocytogenes J0161]
 gi|254912469|ref|ZP_05262481.1| GGDEF domain-containing protein [Listeria monocytogenes J2818]
 gi|254936796|ref|ZP_05268493.1| GGDEF domain-containing protein [Listeria monocytogenes F6900]
 gi|284802356|ref|YP_003414221.1| hypothetical protein LM5578_2112 [Listeria monocytogenes 08-5578]
 gi|284995498|ref|YP_003417266.1| hypothetical protein LM5923_2063 [Listeria monocytogenes 08-5923]
 gi|16411364|emb|CAC99989.1| lmo1911 [Listeria monocytogenes EGD-e]
 gi|47015147|gb|EAL06088.1| GGDEF domain protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258599587|gb|EEW12912.1| GGDEF domain-containing protein [Listeria monocytogenes FSL N3-165]
 gi|258609391|gb|EEW21999.1| GGDEF domain-containing protein [Listeria monocytogenes F6900]
 gi|284057918|gb|ADB68859.1| hypothetical protein LM5578_2112 [Listeria monocytogenes 08-5578]
 gi|284060965|gb|ADB71904.1| hypothetical protein LM5923_2063 [Listeria monocytogenes 08-5923]
 gi|293590451|gb|EFF98785.1| GGDEF domain-containing protein [Listeria monocytogenes J2818]
          Length = 378

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 94/166 (56%), Gaps = 11/166 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q + +D L+GL N   F ++   ++N        LS++  DIDYFK++ND +GH VG+
Sbjct: 205 LQQSTILDPLTGLTNFRHFENAFDAAFNHATLKKSNLSVIIIDIDYFKRVNDTYGHLVGN 264

Query: 153 KVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            V++  S  L+ + F     + R+GGEEFA      +  E   LA  +R+ +E   + I 
Sbjct: 265 GVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPIV 324

Query: 212 SGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255
           +  S+ ITISAGIA    +   S   ++  ADQALY AK++GRN+V
Sbjct: 325 ASGSV-ITISAGIANYDGRNYPSANELLNAADQALYNAKRNGRNQV 369


>gi|213855261|ref|ZP_03383501.1| hypothetical protein SentesT_14822 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 274

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 20/206 (9%)

Query: 74  ISITISLLLGYISGSIL----------KELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           ISI ++LL G  +  +L          K +F+  N     +  D L+ L N  A      
Sbjct: 62  ISIALTLLWGLFTAMLLISWGVIRHMVKNMFVLQNSPQWQAWHDPLTRLYNRGALFEKAS 121

Query: 124 SYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
              ++        S++  D+DYFK +ND FGH  GD+V++  +  +          GR+G
Sbjct: 122 RLAKRYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVG 181

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPIS 234
           GEEF     G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE        
Sbjct: 182 GEEFCIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFE 241

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSD 260
            +   AD+ LY AK+SGRNR +C SD
Sbjct: 242 QLQSLADKRLYYAKQSGRNR-ICASD 266


>gi|157377236|ref|YP_001475836.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157319610|gb|ABV38708.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 610

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 101/181 (55%), Gaps = 13/181 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEK----LSIVFFDIDYFKQI 142
           L+EL  +  ++++ + +D L+G+ N +AF   L   G  + +    ++I+  DID FK I
Sbjct: 429 LRELNEANQKLTEQATVDSLTGVKNRAAFDKRLLAEGRLSRRQQTPMAILMLDIDRFKSI 488

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD+ +  ++  L      P   V R GGEEFA     ++E+ A ++A  +RK
Sbjct: 489 NDTYGHLAGDQTLRLIAQTLKENLKRPADLVSRFGGEEFAIILPNTAEEGAVLVAELIRK 548

Query: 202 IIENSQINISSGPSIHITISAGIAER---CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +    I+  +  +I +TIS G++        +P + ++ +AD+ALY AK +GRN V+ +
Sbjct: 549 TVAELPIHWENK-TIPLTISIGVSAEIINTENQP-NNLLEQADKALYRAKNNGRNCVMVY 606

Query: 259 S 259
           +
Sbjct: 607 T 607


>gi|83309858|ref|YP_420122.1| GGDEF domain-containing protein [Magnetospirillum magneticum AMB-1]
 gi|82944699|dbj|BAE49563.1| GGDEF domain [Magnetospirillum magneticum AMB-1]
          Length = 352

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 93/180 (51%), Gaps = 12/180 (6%)

Query: 98  NRISQLSR---IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFG 147
           N +  L R    D L+ L N   F  SL        + +  LS++  DID+FKQ ND +G
Sbjct: 168 NHLDDLKREASTDALTQLANRKLFDHSLNLAVLDARAADAPLSLLMIDIDHFKQFNDTYG 227

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD+V+  ++  L  V        R GGEEFA     +  +++  +A  +R  +   +
Sbjct: 228 HQLGDQVLKLVARSLSEVAQAKDTAARYGGEEFAVILPATPLEKSMEVAETIRNQVSTKR 287

Query: 208 I-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           + N  +G  +  +T+S G A     E   ++++RAD+A+Y+AK+ GRNRV    D+E  T
Sbjct: 288 LTNRRTGQVLGQVTLSIGAALLREAEAPDSLVHRADEAMYLAKRDGRNRVKSEIDLEKPT 347


>gi|326387643|ref|ZP_08209249.1| hypothetical protein Y88_0556 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326207689|gb|EGD58500.1| hypothetical protein Y88_0556 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 468

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 89/163 (54%), Gaps = 9/163 (5%)

Query: 100 ISQLSR---IDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           I +L R    D L+GL N   F  +L    +  E+  +   DID+FKQ+ND +GH VGD 
Sbjct: 306 IDELRRAAFTDPLTGLANRRLFFETLRERATGTERACLAMVDIDHFKQVNDRYGHAVGDA 365

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+   +D       +  F+ R+GGEEFA     ++ ++A  +   L   +  S ++ ++G
Sbjct: 366 VLCHFADLARSTLRSRDFIARIGGEEFAIIIQDTTIEQACQVCQRLLDRLAASPVDTAAG 425

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           P + IT+S+G+A        S  +  AD+ALY AK+ GR+R+V
Sbjct: 426 P-VSITLSSGVAAVGPDCDAS--LAAADEALYQAKRDGRSRLV 465


>gi|291483362|dbj|BAI84437.1| hypothetical protein BSNT_01543 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 359

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 12/167 (7%)

Query: 104 SRIDCLSGLLNHSAFISSLGS-YNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +  D L+G+ N   F  +  + Y +       + ++++ DID+FK IND +GH  GD+V+
Sbjct: 192 AHFDFLTGVYNRRKFEETTKALYQQAADTPHFQFALIYMDIDHFKTINDQYGHHEGDQVL 251

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L  +L           R+GGEEFA      S  +AA +A  +R+ + ++ I +++G  
Sbjct: 252 KELGLRLKQSIRNTDPAARIGGEEFAVLLPNCSLDKAARIAERIRRTVSDAPIVLTNGEE 311

Query: 216 IHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + +TIS G A   +  ++P S  I  ADQ LY AK++GRNR VCFS+
Sbjct: 312 LSVTISLGAAHYPNNTEQPGSLPIL-ADQMLYKAKETGRNR-VCFSE 356


>gi|260461134|ref|ZP_05809383.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075]
 gi|259033168|gb|EEW34430.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075]
          Length = 253

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 99/167 (59%), Gaps = 5/167 (2%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-GSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+++ +  D ++G+LN  +F ++L GS   +++ +++  D D+FK+IND+FGH  GD  +
Sbjct: 84  RLAEKASRDDMTGMLNRESFFAALDGSRRKSDRGALLIIDADHFKKINDSFGHLTGDDAL 143

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  +         +GR+GGEEF A  +G++EQEA  +A  +R+ +E  +       +
Sbjct: 144 LLIASAIERGVRHGDVLGRIGGEEFGAFLVGATEQEAKRVAERIRREVELIRFRPVDERT 203

Query: 216 IHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           I +T+S G    C +E  +S ++  AD+ LY AK +GRN  +  +DI
Sbjct: 204 IPLTVSIG-GTVCGEEANVSELMRAADRRLYQAKHAGRNLSILDTDI 249


>gi|157738359|ref|YP_001491043.1| GGDEF/HAMP domain-containing protein [Arcobacter butzleri RM4018]
 gi|157700213|gb|ABV68373.1| GGDEF/HAMP domain protein [Arcobacter butzleri RM4018]
          Length = 581

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 137/290 (47%), Gaps = 39/290 (13%)

Query: 2   TRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL 61
           T + ++++ I+  +EK  E +   TF +  +    I IA ++F   I+L  I + P Y L
Sbjct: 296 TLNKQEYIVIFADYEKITEPYLSQTFKLLLTF---IIIAFLMFPIMIYLSGIIIKPIYNL 352

Query: 62  --EYILVEN-------------LSLVIISITISLLLGYISG----------SILKELFIS 96
             + I ++N             L + ++S +   +   I+              +EL   
Sbjct: 353 VKQSIKIKNRKYNDVSQIESPILEIALLSASFENMAQSINSYQNSLEDKVKQRTEELLAK 412

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
              + +LS  D L+ L N      SL         YN   SI+  DIDYFK++NDNFGH 
Sbjct: 413 NEELLKLSITDNLTKLYNRVKLDKSLQDEINRSQRYNTNFSIILLDIDYFKKVNDNFGHQ 472

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD+V+   +  L         +GR GGEEF      +  ++A  +A+ +   I+  +  
Sbjct: 473 IGDEVLIESAQVLSKNIRNVDILGRWGGEEFLVICPETKIEDAIKVASHINAAIKLHK-- 530

Query: 210 ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            ++ P+  +TIS G+A    H + +  II  AD+ALY AK+ GR++V+ F
Sbjct: 531 FTTYPNT-VTISLGVATFSKHIKNVDDIILNADKALYQAKEEGRDKVIAF 579


>gi|15965900|ref|NP_386253.1| hypothetical protein SMc01464 [Sinorhizobium meliloti 1021]
 gi|15075169|emb|CAC46726.1| Diguanylate cyclase [Sinorhizobium meliloti 1021]
          Length = 426

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 1/137 (0%)

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
           +  E  + +  D+D+FKQIND +GH  GD  +A  +D +         +GR+GGEEF   
Sbjct: 260 ARQEPAAFLLLDLDFFKQINDQYGHACGDMALAHFADTVSAFLAGRGVLGRIGGEEFGIV 319

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
               +E++A  LA D+ +++  +     S   I +T+S GIA     E I+ ++ RAD A
Sbjct: 320 LPDHTEEQARALAEDICRVVRETPAG-RSHQRIRLTVSIGIAAAIAGETITDVMIRADLA 378

Query: 244 LYVAKKSGRNRVVCFSD 260
           LY +K  GR+R     D
Sbjct: 379 LYDSKADGRDRCSVARD 395


>gi|300698180|ref|YP_003748841.1| diguanylate cyclase [Ralstonia solanacearum CFBP2957]
 gi|299074904|emb|CBJ54473.1| Diguanylate cyclase (GGDEF domain) fused with response regulator
           pleD (Stalked cell differentiation-controlling protein)
           [Ralstonia solanacearum CFBP2957]
          Length = 467

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 8/176 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL  +++++  L+  D L+GL N   FI  +       G  +   S++  D+D FK I
Sbjct: 291 LRELQAAHHKLEHLAATDPLTGLANRREFIGRVEAEIANAGHASAPFSVLALDLDRFKAI 350

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD V+   + + +        V R+GGEEF           A  +A  +R  
Sbjct: 351 NDTYGHQAGDHVLQRFAKKCLEAIRPHDGVARVGGEEFMVLLPKVPLNAAHAIAERIRTA 410

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           I  S   +  G ++ +T+S G++E       I  I+  AD+ LY AK  GRNRV+ 
Sbjct: 411 IAASPFELEPGHAVALTVSIGVSEFGRDGSDIDAILRSADERLYRAKHEGRNRVIA 466


>gi|262041036|ref|ZP_06014255.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041594|gb|EEW42646.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 379

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 5/162 (3%)

Query: 98  NRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            R+  ++  D L+G  N    +A+++++      L+++  D+DYFK+ ND +GH  GD+ 
Sbjct: 215 QRLESIANQDALTGTANRRALNAYLAAIWQQKTPLALMMIDVDYFKRYNDRYGHQAGDEC 274

Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISS 212
           ++ ++  L + V      V R GGEEF     G S   A  +A  ++ KI E    + +S
Sbjct: 275 LSSVAQVLKMAVRAEGDLVARYGGEEFVVVLPGVSLAHATAIAERIQQKIREAGLPHAAS 334

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +  +T+S GI       PI T+I RAD ALY AK  GRN+
Sbjct: 335 AVASEVTVSIGIVASDGTVPIETLIARADSALYQAKNKGRNQ 376


>gi|224372280|ref|YP_002606652.1| diguanylate cyclase/phosphodiesterase domain 1 [Nautilia
           profundicola AmH]
 gi|223588392|gb|ACM92128.1| diguanylate cyclase/phosphodiesterase domain 1 [Nautilia
           profundicola AmH]
          Length = 614

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 87/160 (54%), Gaps = 13/160 (8%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKL-----SIVFFDIDYFKQINDNFGHPVGDKVI 155
            + S  D L+ + N       L   N+K+     S++FFDID+FK INDN+GH  GD V+
Sbjct: 459 KEKSEFDALTQIYNRGTIEKIL---NKKIKETDGSLIFFDIDHFKNINDNYGHEKGDLVL 515

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
           A L+  +     +  + GR GGEEF      +  + A  +A  LRKIIE +  +      
Sbjct: 516 ASLARIIQKNIRSSDYFGRWGGEEFVIILPQAPYEIAYKIAEKLRKIIEQTDFD-----G 570

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++ITIS G++E    +    ++ + D+ALY AK SGRN+V
Sbjct: 571 LNITISLGVSEFKKGDNPEVVLKKVDEALYEAKNSGRNQV 610


>gi|119944058|ref|YP_941738.1| diguanylate cyclase with PAS/PAC sensor [Psychromonas ingrahamii 37]
 gi|119862662|gb|ABM02139.1| diguanylate cyclase with PAS/PAC sensor [Psychromonas ingrahamii 37]
          Length = 1078

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 62/163 (38%), Positives = 78/163 (47%), Gaps = 11/163 (6%)

Query: 100  ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
            I  L+  D L+G+ N  AF + L S       Y   LS+V FDIDYFK++NDNFGH  GD
Sbjct: 917  IKLLATTDSLTGIANRRAFSTHLASELERSNRYGTPLSLVMFDIDYFKKVNDNFGHDAGD 976

Query: 153  KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             V+  LS+ +         V R GGEEF      S    A      LR+ I     +   
Sbjct: 977  DVLQALSELVKRNIRAVDIVARWGGEEFMLLMPESDISAATAAIEKLRREIS----DFPF 1032

Query: 213  GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G    +T+S GI      E     + R D ALY AK+ GRNRV
Sbjct: 1033 GQVGSLTVSFGITVFVLNEDSKVFLKRVDDALYQAKEKGRNRV 1075


>gi|329998476|ref|ZP_08303113.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
 gi|328538666|gb|EGF64762.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
          Length = 379

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 5/162 (3%)

Query: 98  NRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            R+  ++  D L+G  N    +A+++++      L+++  D+DYFK+ ND +GH  GD+ 
Sbjct: 215 QRLESIANQDALTGTANRRALNAYLAAIWQQKTPLALMMIDVDYFKRYNDRYGHQAGDEC 274

Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISS 212
           ++ ++  L + V      V R GGEEF     G S   A  +A  ++ KI E    + +S
Sbjct: 275 LSSVAQVLKMAVRAEGDLVARYGGEEFVVVLPGVSLAHATAIAERIQQKIREAGLPHAAS 334

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +  +T+S GI       PI T+I RAD ALY AK  GRN+
Sbjct: 335 AVASEVTVSIGIVASDGTVPIETLIARADSALYQAKNKGRNQ 376


>gi|326796702|ref|YP_004314522.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326547466|gb|ADZ92686.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 508

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 84/158 (53%), Gaps = 8/158 (5%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N +A++ ++          N+ L +   DID+FK+IND +GH  GDKV+  + 
Sbjct: 349 DSLTNLPNRAAYLETILPLIVNSKKTNKPLCLAVCDIDHFKKINDTWGHLAGDKVLRLVP 408

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            Q++   G    + R GGEEF      S+ +E  +    +R  +E +  N+   P + +T
Sbjct: 409 KQILSAVGKEDLLFRYGGEEFVLLIPASTVEECHVKVEAVRASVEKTPFNVEGQP-VSVT 467

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IS G+      +   +I  RAD+ LY AK+SGRN+VV 
Sbjct: 468 ISIGMDYLNANDDHESIFARADKHLYEAKESGRNKVVS 505


>gi|296282551|ref|ZP_06860549.1| signal transduction response regulator [Citromicrobium
           bathyomarinum JL354]
          Length = 412

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 96/177 (54%), Gaps = 16/177 (9%)

Query: 91  KELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142
           + L  +  R+  LS +D L+GL N        H+ F +SL +  E L++V  D+D+FK+ 
Sbjct: 221 RRLMEANERLRALSDMDELTGLPNRRHLERVFHTVFETSLAADTE-LAVVMIDVDHFKRF 279

Query: 143 NDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD+ +  ++  L   + G    V R GGEEF A      E  A  LA+ +R 
Sbjct: 280 NDTYGHIAGDRTLVQVARLLEKDLSGEGRTVARFGGEEFIAVLENMDEHAALTLADKVRS 339

Query: 202 IIENSQINISSGPSIH-ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I  ++ +I+ G     +T+S G+A   R  + P + II RAD ALY AK++GRN V
Sbjct: 340 AI--AKRSITGGDRRRSVTVSMGVALRNRADRSP-TAIIERADAALYEAKQAGRNLV 393


>gi|296161074|ref|ZP_06843884.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. Ch1-1]
 gi|295888597|gb|EFG68405.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. Ch1-1]
          Length = 432

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 84/155 (54%), Gaps = 7/155 (4%)

Query: 107 DCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+GL N   F+      LG+ ++ LS+   DID+FK+IND++GH +GD+V+  L+   
Sbjct: 276 DALTGLPNRREFLEFVDKVLGT-DDVLSVFILDIDFFKKINDSYGHDIGDEVLRVLAKVG 334

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHITIS 221
           + +        R GGEEF AA  G+        A +LR+ IE      +     I  T+S
Sbjct: 335 MSITHESNLFARWGGEEFVAALPGADADLVRRFAEELRQRIEQQDFEHAWHLKPIPFTVS 394

Query: 222 AGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
            G+  R   E  +  ++ RAD+ALY AKK GRNRV
Sbjct: 395 IGVVTRAEGERDVDALMKRADRALYRAKKLGRNRV 429


>gi|146305203|ref|YP_001185668.1| diguanylate cyclase [Pseudomonas mendocina ymp]
 gi|145573404|gb|ABP82936.1| diguanylate cyclase [Pseudomonas mendocina ymp]
          Length = 614

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q S +D L+GL N +A+       ++    Y  +L +   D+D+FK+IND +GH  GD+V
Sbjct: 452 QKSLLDPLTGLPNRAAWSERLELEVARRARYGGELLLAVLDVDHFKRINDGYGHLAGDRV 511

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++ +L        F+ R GGEEF      +  +    L   LR  IE    +    P
Sbjct: 512 LKIIAGELHKRLRKTDFIARFGGEEFVLLIPATPLEGGMQLLETLRAAIEACPFHFKGEP 571

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT+S G+AE    E    +  RADQALY AK +GRNRV
Sbjct: 572 -VTITLSTGLAEFRDGESAEAVFERADQALYRAKGNGRNRV 611


>gi|71736520|ref|YP_273494.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71557073|gb|AAZ36284.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 459

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 96/188 (51%), Gaps = 22/188 (11%)

Query: 85  ISGSILKELFISYNRISQLSR---------IDCLSGLLNHSA-------FISSLGSYNEK 128
           + G+I   + IS +  ++L R          D L+GL N  A        I +     + 
Sbjct: 267 LEGTITHYVSISQDVTTRLGREQKLLEIAHSDPLTGLNNRRAAEHTLERLIDTARISGKP 326

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            S++  DID+FK +ND +GHP GD+V+  ++  L           R GGEEF      SS
Sbjct: 327 FSLIIGDIDHFKSVNDRYGHPAGDRVLTSVAVILKQRIRLQDVAARWGGEEFLILVPDSS 386

Query: 189 EQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
              AA LA+ +RK +E+  I N  S     +TIS G+A+    E  +++I RAD+ALY A
Sbjct: 387 LDHAAELADRIRKGVEDLLIPNTGS-----VTISLGVAQLSPGETAASLIQRADKALYQA 441

Query: 248 KKSGRNRV 255
           K+ GRNRV
Sbjct: 442 KRRGRNRV 449


>gi|39934786|ref|NP_947062.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009]
 gi|39648636|emb|CAE27157.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris
           CGA009]
          Length = 736

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 90/175 (51%), Gaps = 17/175 (9%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----------IVFFDIDYFK 140
           +EL I    +++ +  D L+GL N   F + L   NE+LS          ++ FDID+FK
Sbjct: 553 EELLIQTEDLARQAATDSLTGLANRMKFDARL---NEELSRSLRNARPFSLIIFDIDHFK 609

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GHPVGD+V+  LS  +         + R GGEEFA     +    A   A  LR
Sbjct: 610 EVNDIYGHPVGDQVLVRLSRTVDASIRQADLLARWGGEEFAILLPDTDAAAAYETAKKLR 669

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++ ++           IT S G+A+    +   T++ RAD ALY AK +GRNRV
Sbjct: 670 LLVAHTIFEHVG----TITASFGVAQVLPGDHADTLVARADNALYRAKLNGRNRV 720


>gi|150016643|ref|YP_001308897.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052]
 gi|149903108|gb|ABR33941.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052]
          Length = 512

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 80/155 (51%), Gaps = 7/155 (4%)

Query: 107 DCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+G+ N   F           S  + +S++  DID FK IND +GHP GD V+  + +
Sbjct: 352 DVLTGVYNRKYFYKIAKEKIEACSDKKHMSLLMMDIDKFKNINDTYGHPTGDVVLKKVMN 411

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
               + G   ++GR GGEEF      ++ ++A  +   +R+ IEN +I +     I IT 
Sbjct: 412 ICKELLGKKYYIGRYGGEEFLILLDNANSEKALEIGETIRRRIENLEI-LHDNKCIKITS 470

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S GI     +  +  +I  AD+ALY AK  GRNRV
Sbjct: 471 SFGIFTSVRERDLENMIKFADKALYEAKSLGRNRV 505


>gi|291616164|ref|YP_003518906.1| YddV [Pantoea ananatis LMG 20103]
 gi|291151194|gb|ADD75778.1| YddV [Pantoea ananatis LMG 20103]
          Length = 365

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 131/281 (46%), Gaps = 38/281 (13%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL------FYIGLTPFYGLEY 63
           ++W  H +    +  H+ +I    F  + +  V FI+ I L      F + +TP      
Sbjct: 82  ALWAWHIQ----YRYHSVLIDDGGFLIVSLLCVFFISAIALSDYLVAFCLHITPSMLTVL 137

Query: 64  ILVENLSLVIISITISL-LLGYISGSILK------------ELFISYNRISQLSRIDCLS 110
           +L     L +I +TI+L L+G+    +++            +L+      S LS +D L+
Sbjct: 138 MLDHGQHLPLILLTIALPLIGFSLQHLMRRRSEDFTLRLMYQLYEEKESFSDLSMLDPLT 197

Query: 111 GLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           GL N     + L        GS+     ++  DID+FK  NDN+GH +GD+ +A +S  +
Sbjct: 198 GLYNRRGLKNRLDNILDNHVGSH----YVLLLDIDHFKAYNDNYGHAMGDQALARVSVAI 253

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN--ISSGPSIHITI 220
                +   V R GGEEF       +   A  LA  +R+ + N +I    +   S H+TI
Sbjct: 254 RDAVRSRDVVTRYGGEEFLVLMTNVNASIAMKLAERIRQYVVNLEIPHLFNERVSTHVTI 313

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           SAGIA   +       +  AD+ALYVAK  GRN ++ + D+
Sbjct: 314 SAGIAP-IYDNEFDQAVANADRALYVAKNQGRNTILAWEDL 353


>gi|192290309|ref|YP_001990914.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
 gi|192284058|gb|ACF00439.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
          Length = 736

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 90/175 (51%), Gaps = 17/175 (9%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----------IVFFDIDYFK 140
           +EL I    +++ +  D L+GL N   F + L   NE+LS          ++ FDID+FK
Sbjct: 553 EELLIQTEDLARQAATDSLTGLANRMKFDARL---NEELSRSLRSGRPFSLIIFDIDHFK 609

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GHPVGD+V+  LS  +         + R GGEEFA     +    A   A  LR
Sbjct: 610 EVNDIYGHPVGDQVLVRLSRTVDASVRQADLLARWGGEEFAILLPDTDAAAAYETAKKLR 669

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++ ++           IT S G+A+    +   T++ RAD ALY AK +GRNRV
Sbjct: 670 LLVAHTIFEHVG----TITASFGVAQVLPGDHADTLVARADNALYRAKLNGRNRV 720


>gi|115375628|ref|ZP_01462885.1| ggdef family protein [Stigmatella aurantiaca DW4/3-1]
 gi|310823179|ref|YP_003955537.1| FHA/GGDEF domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367404|gb|EAU66382.1| ggdef family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396251|gb|ADO73710.1| FHA/GGDEF domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 303

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 97/179 (54%), Gaps = 13/179 (7%)

Query: 88  SILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
           SI  +L   Y R I + +  D L+ L N   F  +L         +   LS+V FD+D+F
Sbjct: 119 SIQDQLEEQYQRSIYESATRDGLTRLYNKKYFTETLRKEFAYCLRHRVALSLVMFDVDHF 178

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND +GHP GD V++ ++ ++     T   + R GGEEFA     S+E++A   A   
Sbjct: 179 KKINDVYGHPAGDYVLSRIAQRVGDTVRTEDLLARYGGEEFALMLRESAEEQALSCAERC 238

Query: 200 RKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           R+ ++ S   I SG  I ++IS G+A   +    +P   ++  AD+ LY AK++GRNRV
Sbjct: 239 RQAVDRSDF-IFSGTPIKVSISLGVATLLDSDFAQP-EDLLASADKYLYRAKRAGRNRV 295


>gi|34557352|ref|NP_907167.1| hypothetical protein WS0964 [Wolinella succinogenes DSM 1740]
 gi|34483068|emb|CAE10067.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 804

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 89/165 (53%), Gaps = 12/165 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +++  D L+ + N + F       I  L  Y + LS+V FDID FK+IND +GH VGD
Sbjct: 639 LEKIAYYDSLTQIYNRNKFNELITREIELLKRYKQPLSLVIFDIDRFKRINDTYGHRVGD 698

Query: 153 KVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           +V+A L+  +   +  T +FV R GGEEF      +  Q A +LA  +R  IE  +    
Sbjct: 699 EVLAELAGIVSREIRSTDIFV-RWGGEEFVIVTPQTPTQGAQLLAEKIRSKIEEWKF--- 754

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G    +T S G+      E I + I RAD+ LY AK +GRN+VV
Sbjct: 755 EGVEECVTCSFGVTNILRLESIESAIERADELLYKAKNNGRNQVV 799


>gi|260769940|ref|ZP_05878873.1| GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260615278|gb|EEX40464.1| GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|315182064|gb|ADT88977.1| GGDEF family protein [Vibrio furnissii NCTC 11218]
          Length = 319

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 107/220 (48%), Gaps = 21/220 (9%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYIS---------GSILKELFISYNRI-SQLSRI- 106
           F  LE +  ENLS+  +   I  L+              S LK       R+ +QL+ + 
Sbjct: 98  FRDLERVENENLSIEEVMTLIRQLVSESRDIRHSTRFLNSQLKNASEEITRLKTQLAEVQ 157

Query: 107 -----DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
                D LSGL N  +F   L +     + +SIV  DID+FK  ND+FGH  GD VI  L
Sbjct: 158 KDALFDGLSGLYNRRSFDDDLSAMLHAQQSISIVLLDIDHFKTYNDDFGHLFGDTVIRAL 217

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI- 216
           + ++       +   R GGEEFA      S + A   A+ LR+ IE   + +  +G  + 
Sbjct: 218 AKRIQSSCREGITAYRFGGEEFALLVPNRSLRSARQFADALRRSIEKLSVRDRRTGMQVG 277

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +IT S G+AE    + +  +I RAD+ LY AK  GRNRV+
Sbjct: 278 NITASFGVAESEPNDTLDMLIDRADKMLYEAKNLGRNRVM 317


>gi|319782928|ref|YP_004142404.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317168816|gb|ADV12354.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 263

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 79/156 (50%), Gaps = 8/156 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N   F  +L  Y E+       + ++  D+D+FKQ+ND  GH VGD+V+  ++
Sbjct: 107 DGLTGMQNRRYFDDALKEYLEEFRRIEKPVGLMILDLDHFKQVNDTHGHDVGDEVLKAVA 166

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L  +      V RLGGEEFA        +     A  +RK I N  + +S    + IT
Sbjct: 167 SCLKDMTRYHDVVARLGGEEFAVVTPNMDAELLGKFAERIRKAIANMSV-LSGNVRLKIT 225

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+A    KE       RAD+ LY AK+ GRNRV
Sbjct: 226 TSVGLAVWDRKETAEEFYRRADRQLYEAKRQGRNRV 261


>gi|82776895|ref|YP_403244.1| hypothetical protein SDY_1629 [Shigella dysenteriae Sd197]
 gi|309788684|ref|ZP_07683284.1| uncharacterized protein yneF [Shigella dysenteriae 1617]
 gi|81241043|gb|ABB61753.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|308923506|gb|EFP69013.1| uncharacterized protein yneF [Shigella dysenteriae 1617]
          Length = 499

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254
           G+       R   +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|114763066|ref|ZP_01442496.1| two component diguanylate cyclase [Pelagibaca bermudensis HTCC2601]
 gi|114544390|gb|EAU47398.1| two component diguanylate cyclase [Roseovarius sp. HTCC2601]
          Length = 470

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 93/176 (52%), Gaps = 10/176 (5%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDK 153
           +Q + ID L+GL N    +  +    E+ +       ++  D+D+FKQ+ND FGH  GD 
Sbjct: 288 AQAALIDPLTGLYNRRYALPHVARLLERATERSRGFALLLADLDHFKQVNDRFGHAAGDV 347

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  ++ +L  +      V R+GGEEF      ++ + A  +A  LR  +   +  +   
Sbjct: 348 VLREVARRLNSILRPSDLVARIGGEEFLVTLPDATAETAHAVAQRLRASVAARRFALPGT 407

Query: 214 PS-IHITISAGIA-ERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           P+ + +T+S G+A       P    ++ RAD+ALY AK +GR+RV+ ++D  + TC
Sbjct: 408 PTRLPVTLSIGLALSGSGAAPGADALLERADRALYAAKDAGRDRVMAWADPHDTTC 463


>gi|323699780|ref|ZP_08111692.1| diguanylate cyclase [Desulfovibrio sp. ND132]
 gi|323459712|gb|EGB15577.1| diguanylate cyclase [Desulfovibrio desulfuricans ND132]
          Length = 498

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 100/211 (47%), Gaps = 24/211 (11%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           P Y L    VE L   +  + ++L     +    KE+ +  +R       D L+ L N  
Sbjct: 287 PGYRLGKDQVETLRSAVNHVGLALR----NALAFKEVKLRADR-------DGLTRLYNRR 335

Query: 117 AF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
           +F       I     Y+  LS++ FD+D+FK +ND +GH  GD V+  + D L  VF T 
Sbjct: 336 SFDERLVYEIKRRARYHHDLSLLMFDLDHFKAVNDTYGHKAGDLVLRKIGDILTTVFRTT 395

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               R GGEEF      +SE+ A  LA  +R  IEN   +   G    +T S G+A    
Sbjct: 396 DLAARYGGEEFVVLLPHTSEEAAWKLAERVRTAIENCAFHF-DGRDFSVTASIGVAS-VE 453

Query: 230 KEPIST----IIYRADQALYVAKKSGRNRVV 256
              +S     ++ +AD+ALY AK +GRN VV
Sbjct: 454 GGSLSASDDDLVLKADKALYQAKNNGRNMVV 484


>gi|313681776|ref|YP_004059514.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313154636|gb|ADR33314.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 602

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 83/172 (48%), Gaps = 11/172 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           +F    +++QL+  D L+ + N   F       IS    Y   LSI+  DID+FK++ND 
Sbjct: 435 VFTDITKLNQLATQDVLTQVANRFQFDNVLEHSISLAQRYGRTLSILLIDIDFFKEVNDT 494

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH +GD V+  L+  L         + R GGEEF      S    A  LA  LR  +  
Sbjct: 495 YGHLIGDDVLKKLAHTLNEGIRKSDVIARWGGEEFVILLPDSELSSALKLAETLRAKVAE 554

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +       P + IT S G+A     E    ++ R D+ LY AK++GRNRVV 
Sbjct: 555 TDFE----PVVKITCSIGVARWNEGENSDQLLKRVDEKLYTAKENGRNRVVS 602


>gi|325474704|gb|EGC77890.1| GGDEF domain-containing protein [Treponema denticola F0402]
          Length = 1399

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 11/175 (6%)

Query: 93   LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
            L +   R  Q +  D L+G      F       I +L + N K S++ +D+D FK IND 
Sbjct: 1054 LLVESKRFQQSASYDTLTGAYTRKYFEVFFKNIIKNLYNSNSKFSLILYDLDKFKNINDT 1113

Query: 146  FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            +GH VGD V+  ++  ++        +GR GGEEF      +  Q+A   A   RK IEN
Sbjct: 1114 YGHLVGDIVLKRVTQTILDSLSQGQILGRYGGEEFTVILPDTDSQKALKTAEYFRKKIEN 1173

Query: 206  SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                + +     ITIS GIA    H +  S ++  ADQALY +K +GRN+   ++
Sbjct: 1174 L---VFTEFDTAITISLGIATFPEHGKTTSELLSNADQALYHSKNTGRNKSTVWA 1225


>gi|157374521|ref|YP_001473121.1| response regulator receiver protein [Shewanella sediminis HAW-EB3]
 gi|157316895|gb|ABV35993.1| response regulator receiver protein [Shewanella sediminis HAW-EB3]
          Length = 302

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 105/210 (50%), Gaps = 26/210 (12%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           YGL+   V+    +   I  +++   +S  I+  L    + +  ++  D L+ L N    
Sbjct: 95  YGLQLGAVD---YITKPIRPAIVTARVSTQIM--LKQKSDELRNMALHDQLTQLYNRHFL 149

Query: 119 ISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           I +          +N  LSI+  DID+FKQ+ND FGH  GD V+  ++  L         
Sbjct: 150 IEAANQKMAESIRHNNPLSILMIDIDHFKQVNDQFGHQAGDSVLQAVAKALAESNRKEDV 209

Query: 172 VGRLGGEEFAA----AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE- 226
           V R GGEEF A     ++ S+E++A  L + + +++            I IT S G+AE 
Sbjct: 210 VARFGGEEFVALFEHCSIDSAEEKAERLRDKIERLM---------PAGIRITASFGVAEL 260

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R ++E    ++ RAD+A+Y AK+ GRNRVV
Sbjct: 261 RPNEESFEQLLARADEAVYRAKELGRNRVV 290


>gi|52145223|ref|YP_086680.1| hypothetical protein BCZK5111 [Bacillus cereus E33L]
 gi|51978692|gb|AAU20242.1| conserved hypothetical protein, GGDEF domain in C-terminal region
           [Bacillus cereus E33L]
          Length = 351

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 113/233 (48%), Gaps = 24/233 (10%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91
           S+F   + F  N++  +I   P      +L +++S+V + +  S +  YI+      +L+
Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQ 179

Query: 92  --ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
             ELF    ++ Q + ID L+GL N   F   +  +       N+ L ++  DID+FK +
Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHICNKRMKNDSLCLLLIDIDHFKSV 236

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GHP GD+V+  +   L  V   P    R GGEEFA             +   +R  
Sbjct: 237 NDTYGHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAA 296

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E     +  G  I IT+S GI+   +++     I  AD ALY +K++GRN+V
Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|194426131|ref|ZP_03058687.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B171]
 gi|194416186|gb|EDX32452.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B171]
          Length = 472

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254
           G+       R   +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGRESYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|46201882|ref|ZP_00054146.2| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 383

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 117/238 (49%), Gaps = 24/238 (10%)

Query: 29  IYF--SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS 86
           +YF  + FF++   +V     + L ++G    YG+  +       V IS+T+ ++L  ++
Sbjct: 152 VYFLNAAFFALRGVSV----GLDLEFMGGRLSYGITALATLWWLCVTISVTLCMVL--MA 205

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
           G  L+E     N   Q SR D L+G LN  AF       ++        LS++  D+D+F
Sbjct: 206 GERLQE---ELNH--QASR-DPLTGALNRRAFSGLAEKELARARRSGLPLSVLMMDLDHF 259

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQ+ND  GH  GD  +         +  T     R GGEEF A   GS+  ++ ++A  L
Sbjct: 260 KQVNDRLGHGGGDDALCLFVALAGRLLRTEDLFCRFGGEEFLALLPGSTAVQSLVVAERL 319

Query: 200 RKI-IENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           R I  E +  ++    S+   +T+S GIA+    + +  II RAD ALY AK  GRNR
Sbjct: 320 RTIFTEEAGQDVPGAASLPFAMTVSVGIAQLAEDDGLEEIIRRADAALYRAKDLGRNR 377


>gi|323702177|ref|ZP_08113844.1| diguanylate cyclase [Desulfotomaculum nigrificans DSM 574]
 gi|323532864|gb|EGB22736.1| diguanylate cyclase [Desulfotomaculum nigrificans DSM 574]
          Length = 316

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 84/164 (51%), Gaps = 12/164 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
           +R+ + +  D L+G  N  A  + L +  E+       L+++F DID FK  ND FGH  
Sbjct: 152 SRLEKEAETDFLTGFFNKRAIRNILVNELERTIRYGIPLTVIFLDIDNFKTYNDTFGHVA 211

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+   +D +     T    GR GGEEF     G+ E+ A  +A  +RK IE      
Sbjct: 212 GDVVLQKTADIIKNSIRTVDIAGRFGGEEFVIILPGTKEEGAVAVAERIRKSIETYPF-- 269

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
              P   +T+S GIA   +   + +++  ADQALY AK+ G+NR
Sbjct: 270 ---PHRKVTVSLGIALAKNSHSVDSLLEEADQALYQAKRQGKNR 310


>gi|307308210|ref|ZP_07587919.1| diguanylate cyclase [Sinorhizobium meliloti BL225C]
 gi|307319677|ref|ZP_07599102.1| diguanylate cyclase [Sinorhizobium meliloti AK83]
 gi|306894608|gb|EFN25369.1| diguanylate cyclase [Sinorhizobium meliloti AK83]
 gi|306901208|gb|EFN31814.1| diguanylate cyclase [Sinorhizobium meliloti BL225C]
          Length = 409

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 1/137 (0%)

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
           +  E  + +  D+D+FKQIND +GH  GD  +A  +D +         +GR+GGEEF   
Sbjct: 243 ARQEPAAFLLLDLDFFKQINDQYGHACGDMALAHFADTVSAFLAGRGVLGRIGGEEFGIV 302

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
               +E++A  LA D+ +++  +     S   I +T+S GIA     E I+ ++ RAD A
Sbjct: 303 LPDHTEEQARALAEDICRVVRETPAG-RSHQRIRLTVSIGIAAAIAGETITDVMIRADLA 361

Query: 244 LYVAKKSGRNRVVCFSD 260
           LY +K  GR+R     D
Sbjct: 362 LYDSKADGRDRCSVARD 378


>gi|49480448|ref|YP_039404.1| hypothetical protein BT9727_5094 [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49332004|gb|AAT62650.1| conserved hypothetical protein, GGDEF domain in C-terminal region
           [Bacillus thuringiensis serovar konkukian str. 97-27]
          Length = 351

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 24/233 (10%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91
           S+F   + F  N++  +I   P      +L +++S+V + +  S +  YI+      +L+
Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQ 179

Query: 92  --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
             ELF    ++ Q + ID L+GL N   F       I +    N+ L ++  DID+FK +
Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNDSLCLLLIDIDHFKSV 236

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GHP GD+V+  +   L  V   P    R GGEEFA             +   +R  
Sbjct: 237 NDTYGHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAA 296

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E     +  G  I IT+S GI+   +++     I  AD ALY +K++GRN+V
Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|82702630|ref|YP_412196.1| diguanylate cyclase [Nitrosospira multiformis ATCC 25196]
 gi|82410695|gb|ABB74804.1| diguanylate cyclase (GGDEF domain) [Nitrosospira multiformis ATCC
           25196]
          Length = 360

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 96/182 (52%), Gaps = 11/182 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL----------GSYNEKLSIVFFDIDYF 139
           L +L    +R+ + +  D L+G++N+   + SL          G     L ++  D+D+F
Sbjct: 180 LDKLRAEASRLQERTWTDELTGVMNYRKLMESLEHHVQRAERRGQERSSLCLIMSDLDFF 239

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND +GH VGD V+  L+ ++         +GR GGEEF      +  + A ++A  +
Sbjct: 240 KKINDTYGHMVGDLVLQHLARRIKSATRDFDMIGRFGGEEFVVIMADTDLELAKVIAERI 299

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           R  + ++  +I    +IH+TIS G+A     E   +++ RAD A+Y AK+ GRN VV   
Sbjct: 300 RLGVMSTPFHIKKF-NIHVTISLGVAMLKPGESRESLLERADAAMYEAKRRGRNCVVTTK 358

Query: 260 DI 261
           ++
Sbjct: 359 EM 360


>gi|170728813|ref|YP_001762839.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169814160|gb|ACA88744.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
          Length = 332

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 7/162 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFI-----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           + +L+  D L+G  N  +       S+  S ++ L+++  D+D+FKQ+NDNFGH  GD V
Sbjct: 153 LHKLALTDPLTGTNNRLSLQERFNQSTQVSEHKPLTLLLLDVDHFKQVNDNFGHVAGDDV 212

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +++ L+  +   + + R+GGEEF      SS QE+  LA  LR  +E     +S G 
Sbjct: 213 LKSIAN-LLTKYTDDLDLFRIGGEEFCIFLHNSSTQESLTLAQTLRANVERETF-VSQGL 270

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            I  TIS G+        +  ++  AD+ LY AK SGRNRV+
Sbjct: 271 KIQATISIGVTLFKEDMQLCDLLRSADEQLYRAKLSGRNRVM 312


>gi|238920501|ref|YP_002934016.1| hypothetical protein NT01EI_2613 [Edwardsiella ictaluri 93-146]
 gi|238870070|gb|ACR69781.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 302

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 83/166 (50%), Gaps = 6/166 (3%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--EKLSIVFFDIDYFKQINDNFG 147
           L+ L     R+  L+  D L+GL N   F SSL S       S+   D+D+FKQIND FG
Sbjct: 132 LRYLARVRGRLRYLALFDDLTGLPNRRHFYSSLMSQPLPRHFSLFIIDLDHFKQINDEFG 191

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD+V+      L   F +P F  R+GGEEFA      SE  A +     R + + S 
Sbjct: 192 HAVGDRVLCQFGRLLHSEFVSPAFPARIGGEEFAVVL--ESEDRAWLETRAARLLQQASM 249

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           + I+    + ++I  GI      E ++  + R D  LY AK +GRN
Sbjct: 250 VRITEQRGLTVSIGVGIY--AAGETLAHFVARVDGGLYQAKGAGRN 293


>gi|327395332|dbj|BAK12754.1| response regulator PleD [Pantoea ananatis AJ13355]
          Length = 525

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 81/152 (53%), Gaps = 6/152 (3%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+GL N   F      ++E+   S +  DID+FK+IND FGH  GD+V+  L+  L  
Sbjct: 365 DPLTGLNNRRGFYIQAAQHSEEPVQSAIAIDIDHFKKINDRFGHDAGDEVLVCLAGLLRK 424

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
              T   + R GGEEF     G++  +AA +A  +R+ +  +     S     +T+S G+
Sbjct: 425 RCRTLDVISRFGGEEFILLLPGTALNDAAAMAERIREAVSKTSFPFISA----MTVSLGV 480

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           A     E    ++ RAD+ALY AK  GRNRV+
Sbjct: 481 ATLSETEDKDALLRRADEALYAAKGDGRNRVM 512


>gi|239833037|ref|ZP_04681366.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239825304|gb|EEQ96872.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 423

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 80/158 (50%), Gaps = 9/158 (5%)

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S  D LSGLLN   F       I       + LS+V  DID+FK IND  GH +GD+VIA
Sbjct: 244 SETDQLSGLLNRRGFEFRAEAAIEKSKRMRQALSLVLCDIDHFKAINDTHGHALGDRVIA 303

Query: 157 FLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             S +L     G      R+GGEEFA    G++ Q A   A   R +  +  I   +G +
Sbjct: 304 AFSAELRKAANGKNGISARIGGEEFAIILPGNTIQSAWRFAEKARLVCRDIHIPGRNG-A 362

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           I  T S GIAE    +  S +  RAD ALY AKK GRN
Sbjct: 363 IVFTASFGIAEMEFDDVFSDLYKRADGALYEAKKGGRN 400


>gi|300717220|ref|YP_003742023.1| diguanylate cyclase [Erwinia billingiae Eb661]
 gi|299063056|emb|CAX60176.1| diguanylate cyclase [Erwinia billingiae Eb661]
          Length = 464

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 122/242 (50%), Gaps = 18/242 (7%)

Query: 26  TFMIYFSIFFSIF--IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           ++ I+F+   ++   I  +I +A+  L   G   F+ ++ +    L   + ++TIS L+ 
Sbjct: 223 SYPIFFTCLLTLLTGITEIILVASKVLTIQGSDDFFRIDSLASARLG--VAAMTISPLIV 280

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFD 135
            +S +  K+L     RI++ +  D L+G L  S   S L +   +         ++   D
Sbjct: 281 ALSTTANKKLV---ARITKRADYDFLTGALTRSGLSSQLNALIARKNKTSGFYGAVFVVD 337

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID FK IND +GH  GD+V+A   + +         + R+GGEEF     G S+  A +L
Sbjct: 338 IDRFKNINDTYGHAAGDQVLAKTVECIRQSLQQTAIISRMGGEEFLVLIEGISQPRAYLL 397

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
           A+ LR+ IE + I ++   ++ +T+S GI+         +   I  AD+ LY+AK SGRN
Sbjct: 398 ADRLRQSIERNTIMLNE-QNLSVTVSIGISTLHVIDAGSLDESIKNADEQLYIAKSSGRN 456

Query: 254 RV 255
           RV
Sbjct: 457 RV 458


>gi|154253692|ref|YP_001414516.1| diguanylate cyclase [Parvibaculum lavamentivorans DS-1]
 gi|154157642|gb|ABS64859.1| diguanylate cyclase [Parvibaculum lavamentivorans DS-1]
          Length = 351

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 9/176 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           L EL  +  +    +R D L+G+ N  AF       +++  + N  L +   DID+FK+ 
Sbjct: 162 LDELQQNLEKAHTEARTDGLTGVNNRKAFDEALARAMAAASTSNAPLCLAIGDIDHFKKF 221

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH  GD+V+  +++ L        FV R GGEEFA     +    A  ++N +R+ 
Sbjct: 222 NDTFGHRTGDQVLRLVANCLKTGALEQHFVARYGGEEFAVIMPATDIATAEAISNKIRET 281

Query: 203 IENSQ-INISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++  + +  S+G S+  +T+S GIA     +  +++I RAD  LY AK +GRNR++
Sbjct: 282 VQARELVKRSTGESLGRVTMSMGIALLRDTDSAASLIERADGCLYDAKHAGRNRII 337


>gi|26990637|ref|NP_746062.1| GGDEF domain-containing protein [Pseudomonas putida KT2440]
 gi|24985623|gb|AAN69526.1|AE016586_5 GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 402

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 13/169 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE---------KLSIVFFDIDYFKQINDNFGHP 149
           R++  + +D L+G+L  SAF     +  E          L+++  DID+FK IND  GH 
Sbjct: 225 RLAHQATVDHLTGVLTRSAFTRRANALLESRQQHAQALPLTLMMLDIDHFKSINDAHGHA 284

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+V+   +  L         + RLGGEEF     G + + A   A  LR+ I++  + 
Sbjct: 285 VGDQVLRQFASTLQDQLHNDELIARLGGEEFVVILPGLAPERANFTAERLRRAIQDLHVT 344

Query: 210 ISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRV 255
             +   + IT+S G+A      P   +  ++  ADQALY AK  GRNRV
Sbjct: 345 -QADQRLQITVSIGVAGCDADMPAPSLDELLASADQALYRAKARGRNRV 392


>gi|320159491|ref|YP_004172715.1| hypothetical protein ANT_00810 [Anaerolinea thermophila UNI-1]
 gi|319993344|dbj|BAJ62115.1| hypothetical protein ANT_00810 [Anaerolinea thermophila UNI-1]
          Length = 1051

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 88/174 (50%), Gaps = 14/174 (8%)

Query: 100  ISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVG 151
            + +L R D L+G+ N   F +SL             + +++  D+D+FK++ND +GH VG
Sbjct: 875  LERLVRTDPLTGVFNRGHFFASLDEEFAREQAWERRRYAVILLDVDHFKRVNDQYGHLVG 934

Query: 152  DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            D+ +  ++D L         V R GGEEF      +S  EA  +A  +R++IE     + 
Sbjct: 935  DQALITIADILRKNVRMRDIVARYGGEEFVIYMPETSVGEARAVAERIRRVIEEQTRVLH 994

Query: 212  SGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              P   +T S GIA +  +E       ++ RAD ALY AK  GRN VV + + E
Sbjct: 995  GFP---VTASMGIAVKSSEEEGTRFDEVLQRADTALYTAKHRGRNCVVVYGEAE 1045


>gi|118480445|ref|YP_897596.1| GGDEF domain-containing protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|118419670|gb|ABK88089.1| possible GGDEF domain protein [Bacillus thuringiensis str. Al
           Hakam]
          Length = 351

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 24/233 (10%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91
           S+F   + F  N++  +I   P      +L +++S+V + +  S +  YI+      +L+
Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQ 179

Query: 92  --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
             ELF    ++ Q + ID L+GL N   F       I +    N+ L ++  DID+FK +
Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNDSLCLLLIDIDHFKSV 236

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GHP GD+V+  +   L  V   P    R GGEEFA             +   +R  
Sbjct: 237 NDTYGHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRTA 296

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E     +  G  I IT+S GI+   +++     I  AD ALY +K++GRN+V
Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|110805543|ref|YP_689063.1| hypothetical protein SFV_1581 [Shigella flexneri 5 str. 8401]
 gi|110615091|gb|ABF03758.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 472

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254
           G+       R   +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|42528080|ref|NP_973178.1| GGDEF domain-containing protein [Treponema denticola ATCC 35405]
 gi|41819125|gb|AAS13097.1| GGDEF domain protein [Treponema denticola ATCC 35405]
          Length = 1774

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 11/175 (6%)

Query: 93   LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
            L +   R  Q +  D L+G      F       I +L + N K S++ +D+D FK IND 
Sbjct: 1429 LLVESKRFQQSASYDTLTGAYTRKYFEVFFKNIIKNLYNSNSKFSLILYDLDKFKNINDT 1488

Query: 146  FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            +GH VGD V+  ++  ++        +GR GGEEF      +  Q+A   A   RK IEN
Sbjct: 1489 YGHLVGDIVLKRVTQTILDSLSQGQILGRYGGEEFTVILPDTDSQKALKTAEYFRKKIEN 1548

Query: 206  SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                + +     ITIS GIA    H +  S ++  ADQALY +K +GRN+   ++
Sbjct: 1549 L---VFTEFDTAITISLGIATFPEHGKTTSELLSNADQALYHSKNTGRNKSTVWA 1600


>gi|296284762|ref|ZP_06862760.1| diguanylate cyclase [Citromicrobium bathyomarinum JL354]
          Length = 365

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 9/173 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           +L  + +R    +++D L+GL N  AF   L +         E LS+ F DID FK IND
Sbjct: 183 KLRKNLDRARHDAQVDYLTGLPNRRAFEEVLETSYLEAQDTGEPLSVAFCDIDQFKAIND 242

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD++I  +++ L  +     ++ R GGEEF     G   QEA    ++ R+ + 
Sbjct: 243 THGHEAGDRIIREIAETLSSLCAKDCYIARHGGEEFVLLFRGVEPQEALAQLDEAREALA 302

Query: 205 NSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + ++    +  P   +T S GIA+          +  ADQALY AK+SGRNR+
Sbjct: 303 SRRMVNRRTEKPFGMVTFSGGIADVLQCADPREALAAADQALYCAKRSGRNRI 355


>gi|239995752|ref|ZP_04716276.1| hypothetical protein AmacA2_14896 [Alteromonas macleodii ATCC
           27126]
          Length = 761

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 90/166 (54%), Gaps = 4/166 (2%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVG 151
           ++  ++  L+  D L+GL N  AF+    S++++     +   DID+FK++ND +GH  G
Sbjct: 593 VAEEKLRHLAMTDSLTGLYNRRAFLDECISFSKQHCRGCVAIVDIDHFKKVNDTYGHDAG 652

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+ +  ++ ++      P  V RLGGEEFA   +G  ++E       LR  +E  ++   
Sbjct: 653 DQALIAVARKIAKHNQAPNVVARLGGEEFAIVMIGDKKEEIHRQLEALRIAVEEGRVTYK 712

Query: 212 SGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +   ++ I+I A   +   +   S ++  AD+ALY AK+ GRN+VV
Sbjct: 713 TDTMNLSISIGATFIKDTFEADFSALLSLADKALYRAKEQGRNQVV 758


>gi|229588170|ref|YP_002870289.1| putative GGDEF domain response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229360036|emb|CAY46890.1| putative GGDEF domain response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 556

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 10/157 (6%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +  L          N+ LS    DID+FK++ND+ GHP+GD+VI  L+
Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRARRENKPLSFAMLDIDHFKRVNDSHGHPMGDRVIKSLA 438

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L        ++GR GGEEFA     +  + A  + +++R     ++I+  + P  +  
Sbjct: 439 LFLKQRLRKTDYIGRYGGEEFAIVMPDTDLESACKVLDEIRGRF--AEIHYPAQPQDLWC 496

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T SAG+ E C       +  +AD+ALY AK +GRNRV
Sbjct: 497 TFSAGLVELCDDSDSLMMAAQADEALYRAKHAGRNRV 533


>gi|188532547|ref|YP_001906344.1| hypothetical protein ETA_03900 [Erwinia tasmaniensis Et1/99]
 gi|188027589|emb|CAO95436.1| Conserved hypothetical protein [Erwinia tasmaniensis Et1/99]
          Length = 522

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 75/216 (34%), Positives = 103/216 (47%), Gaps = 34/216 (15%)

Query: 66  VENLSLVIISITISLLLG--------YISGSILKELFISYNR--------ISQLSRIDCL 109
           +ENL+ +  S T   L G        Y     LK+ F +Y+R        +   +  D L
Sbjct: 307 LENLTRLTSSGTAGRLSGKVDEIETWYREADRLKKAFQAYSRTINKTFSILRDDALTDHL 366

Query: 110 SGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           + L N        + F+   GS+    S+   DID+FKQ+ND FGH  GD+V+  +S  L
Sbjct: 367 TKLHNRRGFDQLTAPFVGGQGSH----SLALIDIDHFKQVNDQFGHDTGDEVLVAVSGLL 422

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHITIS 221
                T   + R GGEEFA     ++  EA  + N +R+ I N Q      P+ IHITIS
Sbjct: 423 KKGCRTQDIICRFGGEEFAILFPDTTLTEAGRVVNRIRENIANVQF-----PAVIHITIS 477

Query: 222 AGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           AG+ E     +     +  ADQ LY AK  GRNRVV
Sbjct: 478 AGVCELAQDGDDREKALAVADQLLYRAKHEGRNRVV 513


>gi|119944956|ref|YP_942636.1| diguanylate cyclase with PAS/PAC sensor [Psychromonas ingrahamii
           37]
 gi|119863560|gb|ABM03037.1| diguanylate cyclase with PAS/PAC sensor [Psychromonas ingrahamii
           37]
          Length = 307

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 8/180 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
            I ++L  +  ++  L+  D L+ LLN  A+       +S    +N+  S++F D+D+FK
Sbjct: 122 KIERQLAEANKQLKLLADHDSLTNLLNARAYYEVCERMMSIALRHNKPFSVLFVDLDHFK 181

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND  GH VGD ++  +S  ++        +GR+GGEEF+     +    A I A  LR
Sbjct: 182 KINDTHGHHVGDLLLKAVSACILETCRDSDLIGRVGGEEFSLFLPETGMSGAMIFAEKLR 241

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             IE     + +  +I IT S G+A +  H + I  I   AD A+Y AK  GRN+V C S
Sbjct: 242 SNIEQLLHPVGTDKNIGITASIGVASKLIHHKAIVDIQRDADHAMYHAKHKGRNQVSCLS 301


>gi|197337031|ref|YP_002157745.1| ggdef domain protein [Vibrio fischeri MJ11]
 gi|197314283|gb|ACH63732.1| ggdef domain protein [Vibrio fischeri MJ11]
          Length = 483

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 87/163 (53%), Gaps = 9/163 (5%)

Query: 101 SQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           S+L+  D L+G  N         +FI +  + N+  S+  FDIDYFKQIND +GH +GD+
Sbjct: 318 SKLALFDDLTGSCNRRCFEAKVLSFIQNYHAKNQTFSVALFDIDYFKQINDTYGHEIGDE 377

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+   S     +  +     RLGG+EF       + +EA ++ N L   I   +I I +G
Sbjct: 378 VLRLFSRACENICESDDHFARLGGDEFVMLLSDKNIEEATVILNQLLDSIRMIEIRI-NG 436

Query: 214 PSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             + +T S G++E          ++ RAD+ALY AK+ GRN+V
Sbjct: 437 QLVQLTSSIGVSEMNDDVFDACKLLSRADEALYEAKRLGRNQV 479


>gi|71279208|ref|YP_270299.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71144948|gb|AAZ25421.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 722

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 10/168 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +   QL+  D L+G +N   F       I+++ ++   LSI+  DID+FK +ND +GH V
Sbjct: 552 DHFQQLALTDALTGAVNRHHFNEVLDQEIANVNNHGSPLSIMLLDIDHFKSVNDRYGHGV 611

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+       V    +   V R+GGEEF      +    A   A  LR+ I   ++NI
Sbjct: 612 GDEVLVMFYQTCVEAVRSSDVVARIGGEEFVIIMPNTQLVNAQKFAERLRQKIAKLELNI 671

Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVV 256
           ++   I +T+S G+++   +      T +  AD++LY AK SGRN+VV
Sbjct: 672 ANNQ-ISVTVSIGVSQWQSEYFTNAETFVAHADKSLYQAKNSGRNKVV 718


>gi|157158328|ref|YP_001462807.1| diguanylate cyclase [Escherichia coli E24377A]
 gi|193064244|ref|ZP_03045327.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E22]
 gi|193067200|ref|ZP_03048169.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           E110019]
 gi|218554056|ref|YP_002386969.1| putative membrane-associated diguanylate cyclase [Escherichia coli
           IAI1]
 gi|218695060|ref|YP_002402727.1| putative membrane-associated diguanylate cyclase (GGDEF domain)
           [Escherichia coli 55989]
 gi|260843827|ref|YP_003221605.1| hypothetical protein ECO103_1652 [Escherichia coli O103:H2 str.
           12009]
 gi|260855237|ref|YP_003229128.1| hypothetical protein ECO26_2123 [Escherichia coli O26:H11 str.
           11368]
 gi|260867961|ref|YP_003234363.1| hypothetical protein ECO111_1918 [Escherichia coli O111:H- str.
           11128]
 gi|293445925|ref|ZP_06662347.1| yneF protein [Escherichia coli B088]
 gi|300819507|ref|ZP_07099702.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
 gi|300823506|ref|ZP_07103635.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
 gi|300903813|ref|ZP_07121720.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|300927382|ref|ZP_07143103.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|331667921|ref|ZP_08368778.1| putative GGDEF domain protein [Escherichia coli TA271]
 gi|331677407|ref|ZP_08378082.1| putative GGDEF domain protein [Escherichia coli H591]
 gi|157080358|gb|ABV20066.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           E24377A]
 gi|192929092|gb|EDV82703.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E22]
 gi|192959790|gb|EDV90224.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           E110019]
 gi|218351792|emb|CAU97508.1| putative membrane-associated diguanylate cyclase (GGDEF domain)
           [Escherichia coli 55989]
 gi|218360824|emb|CAQ98391.1| putative membrane-associated diguanylate cyclase (GGDEF domain)
           [Escherichia coli IAI1]
 gi|257753886|dbj|BAI25388.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368]
 gi|257758974|dbj|BAI30471.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009]
 gi|257764317|dbj|BAI35812.1| conserved predicted protein [Escherichia coli O111:H- str. 11128]
 gi|291322755|gb|EFE62183.1| yneF protein [Escherichia coli B088]
 gi|300404195|gb|EFJ87733.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|300416677|gb|EFJ99987.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|300523976|gb|EFK45045.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
 gi|300527914|gb|EFK48976.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
 gi|315253944|gb|EFU33912.1| diguanylate cyclase domain protein [Escherichia coli MS 85-1]
 gi|323156620|gb|EFZ42764.1| hypothetical protein ECEPECA14_1499 [Escherichia coli EPECa14]
 gi|323176627|gb|EFZ62219.1| hypothetical protein ECOK1180_5329 [Escherichia coli 1180]
 gi|323185968|gb|EFZ71325.1| hypothetical protein ECOK1357_0698 [Escherichia coli 1357]
 gi|324020278|gb|EGB89497.1| diguanylate cyclase domain protein [Escherichia coli MS 117-3]
 gi|324119306|gb|EGC13193.1| GGDEF domain-containing protein [Escherichia coli E1167]
 gi|331064885|gb|EGI36787.1| putative GGDEF domain protein [Escherichia coli TA271]
 gi|331073867|gb|EGI45187.1| putative GGDEF domain protein [Escherichia coli H591]
          Length = 472

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254
           G+       R   +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|255028254|ref|ZP_05300205.1| hypothetical protein LmonL_01604 [Listeria monocytogenes LO28]
          Length = 321

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 94/166 (56%), Gaps = 11/166 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q + +D L+GL N   F ++   ++N        LS++  DIDYFK++ND +GH VG+
Sbjct: 148 LQQSTILDPLTGLTNFRHFENAFDAAFNHATLKKSNLSVIIIDIDYFKRVNDTYGHLVGN 207

Query: 153 KVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            V++  S  L+ + F     + R+GGEEFA      +  E   LA  +R+ +E   + I 
Sbjct: 208 GVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPIV 267

Query: 212 SGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255
           +  S+ ITISAGIA    +   S   ++  ADQALY AK++GRN+V
Sbjct: 268 ASGSV-ITISAGIANYDGRNYPSANELLNAADQALYNAKRNGRNQV 312


>gi|94263497|ref|ZP_01287309.1| GGDEF [delta proteobacterium MLMS-1]
 gi|93456135|gb|EAT06278.1| GGDEF [delta proteobacterium MLMS-1]
          Length = 525

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 128/260 (49%), Gaps = 17/260 (6%)

Query: 13  LCHEKNLESFSP--HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           L H++  +   P  H+F     +    +   ++ I ++    +G    Y  +  LV    
Sbjct: 262 LRHDRRFQQQLPDEHSFTWKVMVGNQPWAVNLLRIHDVEQQPVGYLISYAPDNFLVALRK 321

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-- 128
             I+S+ ++ LL    G +L  L  S + + +L+  D L+GL N  +F+  LG   E+  
Sbjct: 322 EFIVSLLVAWLLAAGLGLLLVLLARSRDEMLRLATTDPLTGLANRRSFMDRLGLEQERFK 381

Query: 129 -----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                + ++  DID+FK++ND  GH VGD+V+   +  +         VGRLGGEEFA  
Sbjct: 382 RFGNPVGLLMLDIDFFKKVNDTHGHHVGDEVLGQFATLMRQNLRHVDLVGRLGGEEFAVV 441

Query: 184 ALGSSEQEAAILANDLR-KIIENSQINI------SSGPSIHITISAGIAE-RCHKEPIST 235
             G+  +     A  LR  + E  Q  +      +S   ++IT+S G+A  +   + +  
Sbjct: 442 LPGADLKGTLHFAERLRCGVGERLQGEVCGHRFSTSAGILNITVSIGVAVLQPGDDGVEP 501

Query: 236 IIYRADQALYVAKKSGRNRV 255
           +++RAD A+Y AK++GRNR+
Sbjct: 502 VLHRADTAMYRAKENGRNRI 521


>gi|302338207|ref|YP_003803413.1| response regulator receiver modulated diguanylate cyclase
           [Spirochaeta smaragdinae DSM 11293]
 gi|301635392|gb|ADK80819.1| response regulator receiver modulated diguanylate cyclase
           [Spirochaeta smaragdinae DSM 11293]
          Length = 342

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 90/176 (51%), Gaps = 8/176 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
            I +EL  S  R+ +++R D LSGLLN  +   ++    E+       LS +  D+D+FK
Sbjct: 165 KINQELETSNRRLEKIARFDILSGLLNRMSLFHTIDIEIERAVRTGRNLSGIMVDLDFFK 224

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            INDN GH  GD+ I  +   L+         GR GGEEF      S+ +++  +A  LR
Sbjct: 225 MINDNHGHLAGDEAIRMVGKVLIQEMRRYDQAGRYGGEEFFVVLPDSNGEQSLGIAERLR 284

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           K +E+S         I +T S G+      E     I RAD+A+Y AK+ GRNRVV
Sbjct: 285 KKLESSPFFFDR-KKISLTASFGVTTFKPGESREHWIGRADRAMYQAKQGGRNRVV 339


>gi|74317057|ref|YP_314797.1| response regulator receiver modulated diguanylate cyclase
           [Thiobacillus denitrificans ATCC 25259]
 gi|74056552|gb|AAZ96992.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 393

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 90/176 (51%), Gaps = 10/176 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFK 140
           +I+K     Y  + +    D L+GLLNHS+        +S +      LS+V  DID+FK
Sbjct: 210 TIVKSKIERYRALRRSMYHDSLTGLLNHSSGKNTLDMVLSGIAHEEGTLSVVMIDIDHFK 269

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           QIND++GHP GD+VI  LS  L         + R GGEEF      +   +A  +   +R
Sbjct: 270 QINDSYGHPTGDQVIRSLSWLLKQRLRKHDILCRYGGEEFLVGLPHTDAGQALAILERVR 329

Query: 201 KIIENSQINIS-SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  + +QI           ++SAG+A   H++    +I  AD+ALY AK  GRNRV
Sbjct: 330 Q--DFAQIRHPYRDTHFSASVSAGVASYPHQQSGDALIKAADEALYQAKHRGRNRV 383


>gi|324329362|gb|ADY24622.1| hypothetical protein YBT020_27000 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 351

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 108/222 (48%), Gaps = 22/222 (9%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRI 100
           N++  +I   P      +L +++S+V + +  S +  YI+      +L+  ELF    ++
Sbjct: 135 NVYSLFILAVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQSNELF---QKM 187

Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            Q + ID L+GL N   F       I +    N+ L ++  DID+FK +ND +GHP GD+
Sbjct: 188 KQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNDSLCLLLIDIDHFKSVNDTYGHPAGDE 247

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  +   L  V   P    R GGEEFA             +   +R  +E     +  G
Sbjct: 248 VLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEKVRAAVEKHSFQLLDG 307

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             I IT+S GI+   +++     I  AD ALY +K++GRN+V
Sbjct: 308 TKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|281600984|gb|ADA73968.1| Diguanylate cyclase (GGDEF) domain protein [Shigella flexneri
           2002017]
 gi|332758748|gb|EGJ89067.1| hypothetical protein SF274771_1921 [Shigella flexneri 2747-71]
 gi|332758917|gb|EGJ89231.1| hypothetical protein SFK671_1972 [Shigella flexneri K-671]
 gi|333018171|gb|EGK37473.1| hypothetical protein SFK304_2187 [Shigella flexneri K-304]
          Length = 472

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254
           G+       R   +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|293414875|ref|ZP_06657518.1| yneF protein [Escherichia coli B185]
 gi|331652890|ref|ZP_08353895.1| putative GGDEF domain protein [Escherichia coli M718]
 gi|291432523|gb|EFF05502.1| yneF protein [Escherichia coli B185]
 gi|331048988|gb|EGI21060.1| putative GGDEF domain protein [Escherichia coli M718]
          Length = 472

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254
           G+       R   +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|206970418|ref|ZP_03231371.1| ggdef family protein [Bacillus cereus AH1134]
 gi|206734995|gb|EDZ52164.1| ggdef family protein [Bacillus cereus AH1134]
          Length = 352

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 104/208 (50%), Gaps = 18/208 (8%)

Query: 65  LVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHSAF 118
           L++ + +V + +  S++ GYI+      +L+  ELF    ++ Q + ID L+GL N   F
Sbjct: 150 LIKEIHIVGLYLISSIITGYITFISANYVLQSNELF---QKMKQYATIDALTGLGNVRQF 206

Query: 119 -------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  IS+    N+   ++  DID+FK +ND +GHP GD+V+  +   L      P  
Sbjct: 207 DLEMNRHISNKNMKNDSFCLLLIDIDHFKYVNDTYGHPAGDEVLKQVGCILRETSQFPDL 266

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
             R GGEEFA            ++   +R  +E+    +     I IT+S G++E  ++E
Sbjct: 267 AFRKGGEEFALLIPNKGLAYGILMGEQIRTAVESHSFQLLDETKIKITVSVGVSE--YEE 324

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
                I  AD ALY +K++GRN+V   S
Sbjct: 325 STEQFIQAADDALYYSKRNGRNKVSSVS 352


>gi|319794454|ref|YP_004156094.1| diguanylate cyclase with gaf sensor [Variovorax paradoxus EPS]
 gi|315596917|gb|ADU37983.1| diguanylate cyclase with GAF sensor [Variovorax paradoxus EPS]
          Length = 356

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 85/169 (50%), Gaps = 22/169 (13%)

Query: 104 SRIDCLSGLLNHSAFISSL-GSYN------EKLSIVFFDIDYFKQINDNFGHPVGDKVI- 155
           S  D L+ L N  +    L  ++N        LS++  D+D+FK+IND  GHP GD+V+ 
Sbjct: 194 SMTDPLTSLWNRRSLDRRLHAAWNLHVREAAPLSLLMIDLDHFKRINDAHGHPTGDRVLV 253

Query: 156 ---AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
              A + DQ+    G      R GGEEF     G     A   A  LR+ +E+     +S
Sbjct: 254 QAAAIIRDQI----GHDGLAARFGGEEFCVVLPGMDAGTAQQRAEQLRRALED-----AS 304

Query: 213 GPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFS 259
            P + +T S G+A     E  S   ++ RAD+ALYVAK+ GRNRV  F 
Sbjct: 305 WPDVKVTASIGVATATADEDGSPNVMLTRADRALYVAKRDGRNRVRHFE 353


>gi|251794416|ref|YP_003009147.1| diguanylate cyclase [Paenibacillus sp. JDR-2]
 gi|247542042|gb|ACS99060.1| diguanylate cyclase [Paenibacillus sp. JDR-2]
          Length = 533

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 8/161 (4%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL N     +    + ++    S++  D+D+FK +ND  GH +GD+V+ F++  +V
Sbjct: 373 DALTGLTNRRTMGAITALWKQQGTPFSVIIMDLDHFKNVNDRHGHQMGDEVLKFVAGIMV 432

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
              G   +  R GGEEF      ++E EA  +A  +R  IE S   I       +T+S G
Sbjct: 433 SERGPDDYCCRFGGEEFTMLLPHATEAEAVQVAERIRLRIEQSVTPIGES----VTMSLG 488

Query: 224 IAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +A      E +  +   ADQALY AK+ GRNR V +S + N
Sbjct: 489 VATFPDAAEEVVELFKYADQALYQAKRDGRNRTVAYSSLMN 529


>gi|90418217|ref|ZP_01226129.1| conserved hypothetical membrane protein with GGDEF domain
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90337889|gb|EAS51540.1| conserved hypothetical membrane protein with GGDEF domain
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 390

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 102/195 (52%), Gaps = 11/195 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRI----DCLSGLLNHSAFISSLGSY 125
           S++ I + I+++    SG+ +  L ++Y R+++  R     D L+GL N  AF   L   
Sbjct: 194 SVLQIHLLIAVIHTTASGAFV--LSVAYERMARDLRHAAMHDALTGLPNRRAFEQRLEKA 251

Query: 126 NEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
            +     ++V FD+D+FK IND +GH  GD+ +   +     V     FV R+GGEEFAA
Sbjct: 252 LQDRGHFALVVFDLDHFKSINDRYGHAAGDEALRRCALLCPSVLRQQDFVARVGGEEFAA 311

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRAD 241
              G +  EA +L + +R  +  ++I  +   S  +T+SAGIA     E     ++  AD
Sbjct: 312 ILPGVTPTEAFMLTDGVRSTVAATRI-AADDVSFGLTLSAGIAHSAEGEASFDRLMRAAD 370

Query: 242 QALYVAKKSGRNRVV 256
             LY AK  GRNR+ 
Sbjct: 371 ANLYRAKNGGRNRIA 385


>gi|320176991|gb|EFW52014.1| hypothetical protein SDB_00545 [Shigella dysenteriae CDC 74-1112]
 gi|320186884|gb|EFW61602.1| hypothetical protein SGF_00911 [Shigella flexneri CDC 796-83]
          Length = 472

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSI 424

Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254
           G+       R   +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|91791896|ref|YP_561547.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91713898|gb|ABE53824.1| diguanylate cyclase [Shewanella denitrificans OS217]
          Length = 321

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 85/166 (51%), Gaps = 9/166 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS+ D L+ L N   +   +         Y +  S+V  DID FKQIND +GHP GDKVI
Sbjct: 154 LSQTDGLTQLHNRRHWQECMEHEFERFNRYADIASLVMIDIDNFKQINDKYGHPAGDKVI 213

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L          GR GGEEF+A    ++  +A      LR  IE S+++      
Sbjct: 214 QHIAHLLKNALRETDCAGRYGGEEFSAVLAKTNATDALQFTERLRTQIEASEVSYKD-QK 272

Query: 216 IHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           I +T+S GI A        S+ +  AD+ALY AK+ GRN+ V ++D
Sbjct: 273 IKVTVSLGINALHSGMGSSSSWLSGADKALYQAKQMGRNKSVIYTD 318


>gi|160898478|ref|YP_001564060.1| diguanylate cyclase [Delftia acidovorans SPH-1]
 gi|160364062|gb|ABX35675.1| diguanylate cyclase [Delftia acidovorans SPH-1]
          Length = 246

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 98/201 (48%), Gaps = 8/201 (3%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           E +L E   LV  S    L +  ++   L+EL      +   +  D L+G+LN +A I  
Sbjct: 48  ERLLRETRRLVRRSDRAELEMTQLN-QRLQEL---AGELEYRATHDPLTGVLNRAAIIER 103

Query: 122 LGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
           +  +   + L+++  DID+FK++ND+FGHPVGD VI  +   L         +GR+GGEE
Sbjct: 104 VNRHFTQQGLALIVLDIDHFKRVNDSFGHPVGDSVILGVVRCLKAAVPATAHIGRVGGEE 163

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F           A  +A  +R  IE     +       IT S G++ R            
Sbjct: 164 FTVLLPQHDSDGAVCVAEQVRAAIEAHPFGLPDASC--ITASFGVSWRPSGGRFDDAYSL 221

Query: 240 ADQALYVAKKSGRNRVVCFSD 260
           AD+ALY AK+SGRN+VV  +D
Sbjct: 222 ADEALYAAKRSGRNQVVRAAD 242


>gi|300917800|ref|ZP_07134444.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
 gi|300414988|gb|EFJ98298.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
 gi|323937350|gb|EGB33628.1| GGDEF domain-containing protein [Escherichia coli E1520]
          Length = 472

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 10/157 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+ + + S    +L S + K    L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 306 DFLTQVYSRSGLYEALKSLSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254
           G+       R   +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|90412943|ref|ZP_01220942.1| hypothetical sensory box/GGDEF family protein [Photobacterium
           profundum 3TCK]
 gi|90326122|gb|EAS42556.1| hypothetical sensory box/GGDEF family protein [Photobacterium
           profundum 3TCK]
          Length = 326

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 88/171 (51%), Gaps = 9/171 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGH 148
           S  +++ LS  D L+ L N   + + L    E+        ++V FDID+FK++ND FGH
Sbjct: 146 SNKQLTHLSMTDRLTQLYNRGHWETCLAEEFERCRQTQTPSTLVMFDIDHFKKVNDTFGH 205

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD VI  +S+ L          GR GGEEF      +S          LR+ IE S++
Sbjct: 206 VAGDGVIRIVSNVLRRTKRQSDIAGRYGGEEFGIILPYTSSDMGQYFTERLRQRIEQSRV 265

Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           N+    SI++TIS G+ E   +       +  AD+ALY++K+SGRN+   F
Sbjct: 266 NVDV-RSINVTISLGVCEWYPELRNYEQWLEHADKALYISKQSGRNQSTVF 315


>gi|114047770|ref|YP_738320.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113889212|gb|ABI43263.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 341

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 84/160 (52%), Gaps = 6/160 (3%)

Query: 107 DCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+G LN  AF +     L    E   ++F DID+FK  NDN+GH +GD+V+  ++ +L
Sbjct: 182 DALTGCLNRRAFDADIAGMLAQAPEGTCLIFVDIDHFKAFNDNYGHQLGDQVLKAVAKRL 241

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITI 220
                    + R GGEEFA     S  + A  LA  +R+ +E   +          HIT 
Sbjct: 242 QEACRDGCKLYRFGGEEFAIVVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDQRIDHITA 301

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           S G+A+   K+ +  +I + D+ LY AK+ GRNRV+  S+
Sbjct: 302 SFGVAQWQEKQSVMQLIEKTDKLLYEAKRLGRNRVMPISN 341


>gi|114562263|ref|YP_749776.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114333556|gb|ABI70938.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 357

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 127/269 (47%), Gaps = 41/269 (15%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY--GLEYILVENLS-LVIISI------- 76
           + +Y  +F+ +F   V     +++F +     Y  GL Y LV  L  L II+I       
Sbjct: 80  YSLYILMFYLVFTGGVEQTGPLWIFIVAPVSVYVLGLSYGLVNLLFFLSIIAIIMFSPIE 139

Query: 77  -----------TISLLLGYISGSILKELF-----ISYN-------RISQLSRIDCLSGLL 113
                       + L+L +++ + L  L+     +SYN       +  QL+  D L+ L 
Sbjct: 140 MPQYATYSTEFKVRLILSFLTTTFLSALYEYSRMLSYNSALKLGKKYQQLALSDPLTTLA 199

Query: 114 NHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N    +       S +   NE LS++  D+D+FK +ND +GH  GD V+  LS       
Sbjct: 200 NRRNALTILQQEKSRISRNNEPLSVLLCDLDHFKMVNDKYGHNCGDMVLTELSQVFKQSV 259

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                V R GGEEF      +S ++A+++A  +R  + + +++      I +TIS GI++
Sbjct: 260 RQQDCVARWGGEEFLFILPQTSAEQASVIAEKIRTNVHHHKVHFLKH-EISLTISIGISQ 318

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRV 255
               + I  +I  AD+ LY AKK+GRN+V
Sbjct: 319 LTDDQNIDELINNADRNLYQAKKNGRNQV 347


>gi|320201800|gb|EFW76376.1| hypothetical protein ECoL_01032 [Escherichia coli EC4100B]
          Length = 472

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254
           G+       R   +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|288957768|ref|YP_003448109.1| hypothetical protein AZL_009270 [Azospirillum sp. B510]
 gi|288910076|dbj|BAI71565.1| hypothetical protein AZL_009270 [Azospirillum sp. B510]
          Length = 342

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 97/205 (47%), Gaps = 16/205 (7%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           I  E   +V     + L L   S   L E+ +S +   + +  D L+G+ N  AF   L 
Sbjct: 138 IAAETREIVDRQTALQLQL-QESSHQLAEMRVSLDSARREALTDALTGIGNRKAFDQMLE 196

Query: 124 SYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
              E        LS++  DID+FK  ND  GH VGD V+  ++  L           R G
Sbjct: 197 EAMETSVRDEQPLSLLMVDIDHFKTFNDIHGHLVGDHVLKLVARMLTECIKGRDTATRYG 256

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQI-----NISSGPSIHITISAGIAERCHKE 231
           GEEFA     +S + A+ LA  +R  +   QI     N + G    + +S G+A+    E
Sbjct: 257 GEEFAIILPRTSLENASKLAEQVRGFVGARQIVNKARNANYGT---VALSVGVAQYRPGE 313

Query: 232 PISTIIYRADQALYVAKKSGRNRVV 256
           P  +++ RADQALY AK+ GRNRV 
Sbjct: 314 PAMSLVRRADQALYAAKRGGRNRVT 338


>gi|291287894|ref|YP_003504710.1| diguanylate cyclase with PAS/PAC sensor [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290885054|gb|ADD68754.1| diguanylate cyclase with PAS/PAC sensor [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 300

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 88/165 (53%), Gaps = 10/165 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG------SYNEK-LSIVFFDIDYFKQINDNFGHPVGD 152
           + +LS ID L+G  N   F   L         +EK L I+ FD+D+FK IND +GH  GD
Sbjct: 135 LKELSYIDGLTGAYNRRTFEHRLAEEFNRHKRDEKPLGIIMFDLDFFKNINDKYGHQFGD 194

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+   +        T  F+ R GGEEF    +  +  +  ++A  LR+ +E +   IS+
Sbjct: 195 VVLQQTAKLCKEKLRTEDFLARYGGEEFVCLLINQNVDQTYLVAERLRESLEKAV--ISN 252

Query: 213 GP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  S+ ITIS GI++  +      +I  AD+ALY AK +GRN VV
Sbjct: 253 GDVSVSITISIGISDSKYASTPEELIQCADKALYEAKNNGRNTVV 297


>gi|153007877|ref|YP_001369092.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188]
 gi|151559765|gb|ABS13263.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188]
          Length = 400

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 94/179 (52%), Gaps = 10/179 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG----SYNEK---LSIVFFDIDYFKQINDNFGHP 149
           +  +++++  D L+GL N   F+  L     +++E     S++  DID FKQ ND +GH 
Sbjct: 212 HGDMAKVAETDELTGLPNRRHFMKRLARAELAFSEDGTAYSVMLIDIDNFKQWNDTYGHA 271

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD+ +   +D  V V      + RLGG+EF+       EQEA  +A D+ + I ++ + 
Sbjct: 272 LGDQALVHFADVAVDVLNRRGVLARLGGDEFSILLTKMDEQEATEIARDIVRAINDAPLA 331

Query: 210 ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             +G  + +T+S GIA  ER ++     +  RAD ALY  K++GRN     +   N  C
Sbjct: 332 F-NGQKLAMTVSIGIASEERDNETSDLDVFARADLALYKVKQAGRNGYATRTATVNAPC 389


>gi|332757400|gb|EGJ87736.1| hypothetical protein SF434370_1843 [Shigella flexneri 4343-70]
 gi|333005206|gb|EGK24726.1| hypothetical protein SFVA6_1925 [Shigella flexneri VA-6]
          Length = 472

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254
           G+       R   +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|320190029|gb|EFW64680.1| hypothetical protein ECoD_03207 [Escherichia coli O157:H7 str.
           EC1212]
          Length = 472

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254
           G+       R   +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|116873608|ref|YP_850389.1| GGDEF domain-containing protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116742486|emb|CAK21610.1| GGDEF domain protein [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 357

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 117/238 (49%), Gaps = 19/238 (7%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
           + +F    IA+ + + N+ L  +   P Y     +  +++LVI +I+  L+   I     
Sbjct: 129 WGVFVLNIIASGLVVINLHLI-LASEPNYWFNMFMFVSIALVIGAISAGLMSNMIKS--- 184

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISS-LGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           K+LF  Y + S L  +  LS +      I+  +   + +++++  DIDYFK IND +GH 
Sbjct: 185 KQLFQKYEQDSTLDYLTKLSNVRQFDEKINHVMDDGSRQVTLMLIDIDYFKNINDTYGHD 244

Query: 150 VGDKVIAFLSDQLVVVF------GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            GD ++     QL ++       G+  F  R GGEEF+   L     E    A  +RK  
Sbjct: 245 AGDAIL----KQLAIILKGNTADGSEAF--RNGGEEFSIVLLDCFIDEGNYFAEKIRKET 298

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSD 260
           E     I  G ++ ITIS G++        S  +++ AD+ALY AK +GRNR VC +D
Sbjct: 299 EEYDFRIPDGQTVKITISIGVSSCTDGASTSEGLFKAADEALYKAKLTGRNR-VCVAD 355


>gi|148657915|ref|YP_001278120.1| PAS/PAC sensor-containing diguanylate cyclase [Roseiflexus sp.
           RS-1]
 gi|148570025|gb|ABQ92170.1| diguanylate cyclase with GAF sensor [Roseiflexus sp. RS-1]
          Length = 797

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 87/175 (49%), Gaps = 14/175 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           +LF    R   L+  D L+GL N   F       +     Y   ++++  D+D+FK IND
Sbjct: 620 QLFTETQR---LATTDQLTGLFNRYHFFALAPRELERARRYRHDVALLIIDVDHFKTIND 676

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD V+  ++D +         + R GGEEF A    ++   A  +A  LR  IE
Sbjct: 677 TYGHVAGDTVLQHIADHMRRELRDADILARFGGEEFIALLPETNLTGALRVAGRLRATIE 736

Query: 205 NSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            + + + +G SI  TIS G A        E + T+I RAD+ALY AK  GRN+V 
Sbjct: 737 ANPVPL-NGQSIRATISVGCASLHPATRDEHLDTLIQRADRALYTAKAGGRNQVA 790


>gi|4378845|gb|AAD19713.1| unknown [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 563

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 17/175 (9%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           EL  +  ++S+L+  D L+GLLN  A ++ L   ++        +SI   D+D+FK+IND
Sbjct: 393 ELQQANKQLSELANTDVLTGLLNRRALMAKLSELHQDALLNENAISIAMLDVDHFKKIND 452

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF---AAAALGSSEQEAAILANDLRK 201
            +GH VGD V+   +  +        F GR GG+EF    +A++  S   A  + N+  K
Sbjct: 453 RYGHLVGDDVMRNAASIIRNNIRQEDFAGRYGGDEFIIAISASIEMSRHIAERIRNEFTK 512

Query: 202 IIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           I+      I +G + + IT+S G+ E   +E IS  + +AD  LY AK +GRNRV
Sbjct: 513 IV------IKNGETELKITVSIGLFEITTEESISIALDKADSLLYWAKNNGRNRV 561


>gi|194436463|ref|ZP_03068564.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 101-1]
 gi|253773513|ref|YP_003036344.1| diguanylate cyclase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|256018257|ref|ZP_05432122.1| diguanylate cyclase [Shigella sp. D9]
 gi|297515996|ref|ZP_06934382.1| diguanylate cyclase [Escherichia coli OP50]
 gi|300929027|ref|ZP_07144523.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
 gi|307310940|ref|ZP_07590586.1| diguanylate cyclase [Escherichia coli W]
 gi|332279308|ref|ZP_08391721.1| diguanylate cyclase domain-containing protein [Shigella sp. D9]
 gi|194424495|gb|EDX40481.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 101-1]
 gi|253324557|gb|ACT29159.1| diguanylate cyclase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|300462987|gb|EFK26480.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
 gi|306909118|gb|EFN39614.1| diguanylate cyclase [Escherichia coli W]
 gi|323378635|gb|ADX50903.1| diguanylate cyclase [Escherichia coli KO11]
 gi|323962294|gb|EGB57883.1| GGDEF domain-containing protein [Escherichia coli H489]
 gi|323973728|gb|EGB68903.1| GGDEF domain-containing protein [Escherichia coli TA007]
 gi|332101660|gb|EGJ05006.1| diguanylate cyclase domain-containing protein [Shigella sp. D9]
          Length = 472

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254
           G+       R   +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|329889207|ref|ZP_08267550.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328844508|gb|EGF94072.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 453

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 89/166 (53%), Gaps = 8/166 (4%)

Query: 102 QLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N         A ++      + ++++  DID+FK +ND+ GH  GD+V
Sbjct: 287 EMAVTDPLTGLHNRRYMNGQLDALVARANRGGDPVAVLVLDIDHFKAVNDSLGHDAGDEV 346

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   S +L           R GGEEF     G++ ++A  +A  +R+ +  S   I  G 
Sbjct: 347 LREFSVRLATNVRAVDLPCRFGGEEFVVVMPGTTLEDAHRIAERIRRDVGASPFRILGGE 406

Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + IT+S G+A  R   +  ++++ RAD+ +Y AKK+GRNRVV  +
Sbjct: 407 PLSITVSVGVAATRGADDTPASLLKRADEGVYEAKKAGRNRVVARA 452


>gi|328949133|ref|YP_004366470.1| diguanylate cyclase [Treponema succinifaciens DSM 2489]
 gi|328449457|gb|AEB15173.1| diguanylate cyclase [Treponema succinifaciens DSM 2489]
          Length = 385

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 80/142 (56%), Gaps = 5/142 (3%)

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           + LS++ FDID+FK+ ND +GH  GD V+  +++ +           R GGEEF      
Sbjct: 229 QTLSVIMFDIDFFKKFNDTYGHACGDYVLKKVAEIISDSIREEDLASRYGGEEFTVLLCN 288

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPIST---IIYRADQ 242
           + + EA ++A  +RK IE + +    G ++ ITIS GI+       P+ +   ++ +AD+
Sbjct: 289 AGKDEAMLVAERIRKRIEQTTV-FYEGHNMQITISGGISVFNVETNPVRSAKILVDQADK 347

Query: 243 ALYVAKKSGRNRVVCFSDIENN 264
           ALYV+K++GRNRV  F     N
Sbjct: 348 ALYVSKRTGRNRVTVFDPSSQN 369


>gi|327482223|gb|AEA85533.1| GGDEF domain-containing protein [Pseudomonas stutzeri DSM 4166]
          Length = 466

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 87/163 (53%), Gaps = 14/163 (8%)

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S+ D L+GL N +A        +     Y   LSIV  DID+FK+IND+FGH +GD+V+ 
Sbjct: 302 SQTDSLTGLANRAALDRRFATALEQARRYRRPLSIVMLDIDHFKRINDDFGHQMGDRVLR 361

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPS 215
             +  L         VGR GGEEF      +S  +A   A    ++ E ++    ++G  
Sbjct: 362 DFAALLDDCLRGSDAVGRWGGEEFLILCPETSGPQAVQFAE---RLCEQARAFPFATG-- 416

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +  T+SAG+AE    +   +++ RAD ALY AK  GR+R VC+
Sbjct: 417 VSQTLSAGVAELSPSDTPDSLLRRADAALYRAKHEGRDR-VCW 458


>gi|229176090|ref|ZP_04303584.1| GGDEF domain protein [Bacillus cereus MM3]
 gi|228607434|gb|EEK64762.1| GGDEF domain protein [Bacillus cereus MM3]
          Length = 256

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 103/204 (50%), Gaps = 18/204 (8%)

Query: 65  LVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHSAF 118
           L++++ +V + +  S++ GYI+      +L+  ELF     + Q + +D L+GL N   F
Sbjct: 54  LIQDIRIVGLYLFSSIVTGYITFFSANYVLQSNELF---QTMKQYATVDALTGLGNVRQF 110

Query: 119 -------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  IS+    N+ L ++  DID+FK +ND +GHP GD+V+  +   L  +   P  
Sbjct: 111 DLEMNRHISNKRMKNDSLCLLLIDIDHFKHVNDTYGHPAGDEVLKQVGRILREISTFPDL 170

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
             R GGEEFA             +   +R  +E     +  G  I IT+S GI+E   + 
Sbjct: 171 TFRKGGEEFALLIPKREIAYGICMGEKIRTAVEKHSFQLLDGTKIKITVSVGISE--FES 228

Query: 232 PISTIIYRADQALYVAKKSGRNRV 255
             +  I  AD ALY +K++GRN+V
Sbjct: 229 SPNQFIQAADDALYYSKRNGRNQV 252


>gi|168756170|ref|ZP_02781177.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4401]
 gi|168761383|ref|ZP_02786390.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4501]
 gi|168768941|ref|ZP_02793948.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4486]
 gi|168774242|ref|ZP_02799249.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4196]
 gi|168781501|ref|ZP_02806508.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4076]
 gi|168788418|ref|ZP_02813425.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC869]
 gi|168799344|ref|ZP_02824351.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC508]
 gi|195937014|ref|ZP_03082396.1| hypothetical protein EscherichcoliO157_11242 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208810839|ref|ZP_03252672.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4206]
 gi|208815485|ref|ZP_03256664.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4045]
 gi|209396620|ref|YP_002270521.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4115]
 gi|217329415|ref|ZP_03445495.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. TW14588]
 gi|261224516|ref|ZP_05938797.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261257085|ref|ZP_05949618.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. FRIK966]
 gi|187770081|gb|EDU33925.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4196]
 gi|189000887|gb|EDU69873.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4076]
 gi|189356697|gb|EDU75116.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4401]
 gi|189361913|gb|EDU80332.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4486]
 gi|189368109|gb|EDU86525.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4501]
 gi|189371802|gb|EDU90218.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC869]
 gi|189378142|gb|EDU96558.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC508]
 gi|208724345|gb|EDZ74053.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4206]
 gi|208732133|gb|EDZ80821.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4045]
 gi|209158020|gb|ACI35453.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4115]
 gi|217317854|gb|EEC26282.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. TW14588]
 gi|320636957|gb|EFX06822.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. G5101]
 gi|320642311|gb|EFX11604.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H- str. 493-89]
 gi|320647663|gb|EFX16420.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H- str. H 2687]
 gi|320653296|gb|EFX21435.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320663737|gb|EFX30969.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326340608|gb|EGD64405.1| hypothetical protein ECoA_03976 [Escherichia coli O157:H7 str.
           1044]
 gi|326340860|gb|EGD64653.1| hypothetical protein ECF_03401 [Escherichia coli O157:H7 str. 1125]
          Length = 472

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254
           G+       R   +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|113970535|ref|YP_734328.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113885219|gb|ABI39271.1| diguanylate cyclase [Shewanella sp. MR-4]
          Length = 341

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 84/160 (52%), Gaps = 6/160 (3%)

Query: 107 DCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+G LN  AF +     L    E   ++F DID+FK  NDN+GH +GD+V+  ++ +L
Sbjct: 182 DALTGCLNRRAFDADIAGMLAQAPEGTCLIFVDIDHFKAFNDNYGHQLGDQVLKAVAKRL 241

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITI 220
                    + R GGEEFA     S  + A  LA  +R+ +E   +          HIT 
Sbjct: 242 QEACRDGCKLYRFGGEEFAIVVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDQRIDHITA 301

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           S G+A+   K+ +  +I + D+ LY AK+ GRNRV+  S+
Sbjct: 302 SFGVAQWQEKQSVMQLIEKTDKLLYEAKRLGRNRVMPISN 341


>gi|330874463|gb|EGH08612.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 389

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 96/188 (51%), Gaps = 22/188 (11%)

Query: 85  ISGSILKELFISYNRISQLSR---------IDCLSGLLNHSA-------FISSLGSYNEK 128
           + G+I   + IS +  ++L R          D L+GL N  A        I +     + 
Sbjct: 197 LEGTITHYVSISQDVTTRLGREQKLLEIAHSDPLTGLNNRRAAEHTLERLIDTARISGKP 256

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            S++  DID+FK +ND +GHP GD+V+  ++  L           R GGEEF      SS
Sbjct: 257 FSLIIGDIDHFKSVNDRYGHPAGDRVLTSVAVILKQRIRLQDVAARWGGEEFLILVPDSS 316

Query: 189 EQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
              AA LA+ +RK +E+  I N  S     +TIS G+A+    E  +++I RAD+ALY A
Sbjct: 317 LDHAAELADRIRKGVEDLLIPNTGS-----VTISLGVAQLSPGETAASLIQRADKALYQA 371

Query: 248 KKSGRNRV 255
           K+ GRNRV
Sbjct: 372 KRRGRNRV 379


>gi|315181990|gb|ADT88903.1| GGDEF family protein [Vibrio furnissii NCTC 11218]
          Length = 369

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 107/206 (51%), Gaps = 17/206 (8%)

Query: 69  LSLVIISITISLLLGYISGSIL---KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
           ++LV++ IT++L++ Y   S L   +++  +  ++ +L+  D L+G+ N       +   
Sbjct: 157 INLVVVWITLALIIWYFEASRLHAYRKMNEANLKLEKLAMTDSLTGVFNRHYIERRIAHS 216

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
                +   D+D FK +ND FGH  GD V+  ++D L   F     VGR GGEEF     
Sbjct: 217 TRPFHVAMIDVDNFKLVNDQFGHVAGDGVLKGIADVLKQSFANIGIVGRWGGEEFIVLLT 276

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGP---SIHITISAGIAERCHKEPISTIIYRADQ 242
             S++       D+ ++ E ++  +++ P    + ++IS G+A     +  +T + + D+
Sbjct: 277 EGSDE-------DIYRLTEQARAKVAATPFGIQVPVSISIGLAHHDLGDYEAT-LRKVDK 328

Query: 243 ALYVAKKSGRNRVVC---FSDIENNT 265
           ALY AK  G+NR+V    + DI++ +
Sbjct: 329 ALYSAKSEGKNRIVSMLQYEDIQHKS 354


>gi|254420292|ref|ZP_05034016.1| GGDEF domain protein [Brevundimonas sp. BAL3]
 gi|196186469|gb|EDX81445.1| GGDEF domain protein [Brevundimonas sp. BAL3]
          Length = 350

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/186 (34%), Positives = 91/186 (48%), Gaps = 16/186 (8%)

Query: 91  KELFISYNRISQLSR---IDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQI 142
           KE+      + Q+ R    D L+ L N  AF   L      +    L++   DID+FK+ 
Sbjct: 166 KEVARLREHLEQVRRDAMTDALTNLANRKAFDERLEQACADAGRTPLTLAILDIDHFKRF 225

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD+V+ ++S  L  V     FV R GGEEFA    G  E   A++A  L  I
Sbjct: 226 NDTWGHQTGDQVLRYVSTILSRVCSGNRFVARFGGEEFAIIFPG--ESPGAVMAA-LEHI 282

Query: 203 IENSQINISSGPSIH-----ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            E          S +     +T+SAG AE    E  + ++ RAD+ALY +K+ GRNRV  
Sbjct: 283 REEVSSRSLRRRSTNDDLGAVTLSAGFAEHLPSEGAAALLERADEALYASKRGGRNRVTS 342

Query: 258 FSDIEN 263
              +EN
Sbjct: 343 ARALEN 348


>gi|90023289|ref|YP_529116.1| hypothetical protein Sde_3649 [Saccharophagus degradans 2-40]
 gi|89952889|gb|ABD82904.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 456

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 85/179 (47%), Gaps = 21/179 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGD 152
           +  +LS  D L+G  N       + +  E+      L+I+  DID+FK+IND  GH VGD
Sbjct: 271 KFEELSTTDSLTGAYNRFGIDRIITNLFEQRALMLPLTIIIADIDHFKRINDTEGHAVGD 330

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-------- 204
           KV++ L   ++       F+GR GGEEF      +  Q   +LA  LR +IE        
Sbjct: 331 KVLSKLGRTILANIRENDFLGRWGGEEFIIICTHTDAQHGFLLAEKLRLLIEGTQFELEN 390

Query: 205 -------NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                  N Q++    P + +T S G+ E    E  +    RAD ALY AKK GRN  V
Sbjct: 391 STNSPRLNQQLHPQLHPQLKVTASFGVGEVQAGETFTETFNRADSALYEAKKQGRNCTV 449


>gi|332160849|ref|YP_004297426.1| diguanylate cyclase/phosphodiesterase domain-containing protein
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|318604751|emb|CBY26249.1| hmst protein [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325665079|gb|ADZ41723.1| diguanylate cyclase/phosphodiesterase domain-containing protein
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|330863378|emb|CBX73500.1| protein adrA [Yersinia enterocolitica W22703]
          Length = 300

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 95/185 (51%), Gaps = 14/185 (7%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIV 132
           LLG ++    K L  +   + ++S  D L+GL N        H+ F  S   Y    +++
Sbjct: 116 LLGLVTYRTAKRLAENKEELLRISVRDGLTGLYNRRHWEHQLHNQF-DSCRRYQHGATLI 174

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQE 191
             DID FK IND FGH VGD+ I  L+++L++       VGR GG+EF A    ++ EQ 
Sbjct: 175 LLDIDNFKSINDTFGHAVGDEAITVLAEELLLGLRAIDIVGRYGGDEFGAILPNTTAEQT 234

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250
             +L     ++   + +  +  P + + +SAGIA+  H        +  AD ALY+AK +
Sbjct: 235 REVLMRIQERL---ADLVFTQAPPLQLRVSAGIADYRHDMINYQQWLKAADSALYLAKDN 291

Query: 251 GRNRV 255
           GRNR+
Sbjct: 292 GRNRI 296


>gi|255523283|ref|ZP_05390253.1| diguanylate cyclase [Clostridium carboxidivorans P7]
 gi|296188219|ref|ZP_06856611.1| diguanylate cyclase (GGDEF) domain protein [Clostridium
           carboxidivorans P7]
 gi|255512937|gb|EET89207.1| diguanylate cyclase [Clostridium carboxidivorans P7]
 gi|296047345|gb|EFG86787.1| diguanylate cyclase (GGDEF) domain protein [Clostridium
           carboxidivorans P7]
          Length = 352

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 84/166 (50%), Gaps = 7/166 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           YNRI + S+ID L+GL N S F S     L  Y EK++I+  DID FK+ ND FGH  GD
Sbjct: 187 YNRIKENSQIDGLTGLYNRSYFFSIMENKLKDYREKITIIMIDIDNFKKCNDTFGHQYGD 246

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQINIS 211
            V+  +S  +         + R GGEE                  D +R +IE S I+  
Sbjct: 247 YVLKEISKIIKENLRKDDIIARYGGEEIIVYMFDMKNVNDIYRRMDYIRSVIEKSVISYK 306

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  S ++T+S GI         +  II +ADQ LY AK  G+NRV+
Sbjct: 307 NIES-NVTVSMGIGISNKTDTSLEKIIEKADQNLYKAKDLGKNRVI 351


>gi|167630247|ref|YP_001680746.1| ggdef domain protein, putative [Heliobacterium modesticaldum Ice1]
 gi|167592987|gb|ABZ84735.1| ggdef domain protein, putative [Heliobacterium modesticaldum Ice1]
          Length = 414

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 3/206 (1%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G  Y+L  + + ++  +     L   + S+  +L       ++ +  D L+GL NH  F 
Sbjct: 203 GPRYLLTPSKAEILQILAGQAALALKNASMYHQLKQQNEYFARQAVTDGLTGLYNHRYFQ 262

Query: 120 SSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
             L        ++++ FDID+FK  ND +GHP GD+++  ++  L    G      R GG
Sbjct: 263 QCLQELMKERPVTLLLFDIDHFKGFNDTYGHPCGDEILRQIAHILRSQLGPQEVAARYGG 322

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTI 236
           EEFA     +  +     A  +R+ + N    N      ++IT+S G++E+      S +
Sbjct: 323 EEFAVILPDADLRRGIERAEQIRQAVANFCFRNPDRTLCLNITVSIGVSEKLAGWDKSRL 382

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIE 262
           I  AD+ALY AK+ GRNRV    D E
Sbjct: 383 IEAADRALYRAKEQGRNRVCADLDRE 408


>gi|110833577|ref|YP_692436.1| GGDEF domain-containing protein [Alcanivorax borkumensis SK2]
 gi|110646688|emb|CAL16164.1| GGDEF domain protein [Alcanivorax borkumensis SK2]
          Length = 367

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 18/232 (7%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           F+A+  +   ++L  +       L   L++ L   +IS++ ++  G I+   L++  +  
Sbjct: 135 FMASAAYALMLWLALLDRWVHLSLSVELLQWLVFAMISVSFAVTGGSINR--LRDALVDK 192

Query: 98  NR--------ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           NR        + +++  D L+GL N    +  L        S +   ++ + D+D+FK+I
Sbjct: 193 NRDLANAVKKVREMAIRDDLTGLFNRRHLLEILERQRALFSSKSVPFAVCYVDLDHFKKI 252

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD+V+   S+  +         GRLGGEEF      S  Q A ++A  LR  
Sbjct: 253 NDRHGHDWGDRVLRQFSELALSGMRDGDHFGRLGGEEFLLVLPQSDAQGALLVAERLRLR 312

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
               + +   GP+I +++S G+A     E +  ++ RADQ LY AK  GR++
Sbjct: 313 WREQRFDAQGGPAI-VSLSVGVAAYQEGERVDELLNRADQGLYRAKAGGRDQ 363


>gi|229199536|ref|ZP_04326197.1| GGDEF domain protein [Bacillus cereus m1293]
 gi|228583941|gb|EEK42098.1| GGDEF domain protein [Bacillus cereus m1293]
          Length = 351

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 113/233 (48%), Gaps = 24/233 (10%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91
           S+F   + F  N++  +I   P      +L +++S+V + +  S +  YI+      +L+
Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLS----MLFKDMSIVALYLACSSVAAYITFISANYVLQ 179

Query: 92  --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
             ELF    ++ Q + ID L+GL N   F       I +    N+ L ++  DID+FK +
Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNDSLCLLLIDIDHFKSV 236

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GHP GD+V+  +   L  V   P  V R GGEEFA                 +R  
Sbjct: 237 NDTYGHPAGDEVLKQIGRILREVSTFPDLVFRKGGEEFALLIPQKGLAYGMRKGEQVRAA 296

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E     +  G  I IT+S GI+   +++     I  AD ALY +K++GRN+V
Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|304408427|ref|ZP_07390073.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus
           curdlanolyticus YK9]
 gi|304342612|gb|EFM08460.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus
           curdlanolyticus YK9]
          Length = 525

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 10/161 (6%)

Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ +LN + FI         +       +++ FDIDYFK++ND +GH  GDK+I  + 
Sbjct: 356 DGLTQILNRTQFIRLGREMLEQMRGQRMPFALMLFDIDYFKRVNDTYGHETGDKMIVHVV 415

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
                        GR GGEEF  A    + Q A  LA  LR  +E + +    G  + +T
Sbjct: 416 SICKERLPEDALFGRYGGEEFVLALPFVTAQGAEALAERLRAAMEYAPLLTPKG-VLTVT 474

Query: 220 ISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            S GI +    + E + T++ +AD+ALY +K+ GRNRV  +
Sbjct: 475 ASFGIVQVAGANDETLETLLSKADEALYTSKRDGRNRVSAY 515


>gi|144899220|emb|CAM76084.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 480

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 91/165 (55%), Gaps = 9/165 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+ +D L+G  N   F       +     Y+  LS++  D+D+FK++ND++GH +GD
Sbjct: 312 LRRLATMDSLTGAPNRRHFSTLAHQEMERANRYDLPLSVIMLDVDHFKKVNDSWGHAIGD 371

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +++  ++  +         +GR+GGEEFA     +    AA +A  LR  +   ++ ++ 
Sbjct: 372 EMLKAVTTAIQGELREVDVLGRMGGEEFALLLPQTGIDGAAQVAERLRSAVAAIRLPLAE 431

Query: 213 GPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
           G  +H TIS G+  R   E     ++ RAD+A+Y AK++GRNRV 
Sbjct: 432 G-WLHATISLGVTTRLEGEAQFEHLLGRADRAMYEAKQAGRNRVA 475


>gi|71909300|ref|YP_286887.1| response regulator receiver modulated diguanylate cyclase
           [Dechloromonas aromatica RCB]
 gi|71848921|gb|AAZ48417.1| response regulator receiver modulated diguanylate cyclase
           [Dechloromonas aromatica RCB]
          Length = 543

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 89/179 (49%), Gaps = 7/179 (3%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDY 138
           I GS++K     Y  + +  R D L+GLLNHSA    L     +      LS+   DID 
Sbjct: 356 ILGSVVKTKIERYRDMLRSGRHDSLTGLLNHSASKEQLEQMLRRTLPAGHLSVAMIDIDR 415

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK INDN+GHPVGD+VI  L+  L         +GR GGEEF  A  G    +A  L + 
Sbjct: 416 FKLINDNYGHPVGDQVIRSLAWLLRGRLRNTDLIGRYGGEEFIVALNGVELGQAITLLDR 475

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +R          S G ++  + S G+A         ++I  AD+AL  AK+ GRN+++ 
Sbjct: 476 IRHDFSQLPHAHSRG-AVRASFSCGVASVPSYLTGGSLIEAADEALLQAKREGRNQIIA 533


>gi|58698225|ref|ZP_00373145.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630041|ref|YP_002726832.1| response regulator PleD [Wolbachia sp. wRi]
 gi|58535252|gb|EAL59331.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225592022|gb|ACN95041.1| response regulator PleD [Wolbachia sp. wRi]
          Length = 458

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 10/167 (5%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +++S  D L+   N   F + L +        + +LS++  DIDYFK +NDNFGH  GD+
Sbjct: 291 AEMSIKDPLTNCYNRRYFDAHLRNIVKDSVEKDRRLSLMILDIDYFKMVNDNFGHSAGDE 350

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  +  ++         + R GGEEF      +   +A  +A  +RKII      ++  
Sbjct: 351 LLKQIQRRISENIRVTDLLARFGGEEFVVVMPDTDTSDAYTIAERIRKIIAKKPFILADK 410

Query: 214 PSIH-ITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + H +T+S GIAE      + I   I RAD+ LY AK SGRNRVV 
Sbjct: 411 NTTHNVTVSIGIAEMQGSDLDNIKEFIVRADKYLYKAKNSGRNRVVT 457


>gi|320323008|gb|EFW79098.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320329869|gb|EFW85857.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 380

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 96/188 (51%), Gaps = 22/188 (11%)

Query: 85  ISGSILKELFISYNRISQLSR---------IDCLSGLLNHSA-------FISSLGSYNEK 128
           + G+I   + IS +  ++L R          D L+GL N  A        I +     + 
Sbjct: 188 LEGTITHYVSISQDVTTRLGREQKLLEIAHSDPLTGLNNRRAAEHTLERLIDTARISGKP 247

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            S++  DID+FK +ND +GHP GD+V+  ++  L           R GGEEF      SS
Sbjct: 248 FSLIIGDIDHFKSVNDRYGHPAGDRVLTSVAVILKQRIRLQDVAARWGGEEFLILVPDSS 307

Query: 189 EQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
              AA LA+ +RK +E+  I N  S     +TIS G+A+    E  +++I RAD+ALY A
Sbjct: 308 LDHAAELADRIRKGVEDLLIPNTGS-----VTISLGVAQLSPGETAASLIQRADKALYQA 362

Query: 248 KKSGRNRV 255
           K+ GRNRV
Sbjct: 363 KRRGRNRV 370


>gi|315186905|gb|EFU20663.1| diguanylate cyclase [Spirochaeta thermophila DSM 6578]
          Length = 529

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 83/167 (49%), Gaps = 11/167 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  LS  D L+ + N       L         Y    S++  D+D+FK IND FGH  
Sbjct: 367 TRLEILSTTDPLTSIFNRRKLQEELTREYHRALRYGSPFSLILIDLDHFKTINDTFGHGK 426

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+ + ++ L     +   VGR GGEEF      +   EAA++A+ L K I  +    
Sbjct: 427 GDEVLIWTAEILRTHLRSTDIVGRWGGEEFLVLCPETRLSEAALIASKLGKEIART---- 482

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S  PS  +TISAG+      + +  ++  AD+ LY AK SGRN V+ 
Sbjct: 483 SPLPSCRVTISAGVVSFSPGKSLEDLLKEADEKLYRAKGSGRNTVIV 529


>gi|309774800|ref|ZP_07669822.1| YaiC/YhcK/ArdA family protein [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917485|gb|EFP63203.1| YaiC/YhcK/ArdA family protein [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 367

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/176 (36%), Positives = 92/176 (52%), Gaps = 16/176 (9%)

Query: 94  FISYNRISQLS----RIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
            ISYN    L     R+D L+ L NH+AF       I    ++++K  +   DID FK I
Sbjct: 187 LISYNEEQALLIERLRMDALTMLYNHNAFYRILEDAIEQGKAHDQKPVLAMLDIDNFKTI 246

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD V+  L+  +       +   R GGEEF       S +EA  L N LR+ 
Sbjct: 247 NDTYGHTCGDCVLRKLAAIMKEQEADNIISARYGGEEFCILFTDCSIKEAEQLMNILRQS 306

Query: 203 IENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            EN +I+  +G    +T SAG+A  E     P + +I  AD+ALY AK++G+NRV+
Sbjct: 307 FENLKIDEINGH--QVTFSAGLAVYEEAFDSP-TAMINAADKALYEAKRNGKNRVI 359


>gi|218705006|ref|YP_002412525.1| putative membrane-associated diguanylate cyclase (GGDEF domain)
           [Escherichia coli UMN026]
 gi|293405009|ref|ZP_06649001.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298380656|ref|ZP_06990255.1| yneF protein [Escherichia coli FVEC1302]
 gi|300897813|ref|ZP_07116203.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1]
 gi|218432103|emb|CAR12991.1| putative membrane-associated diguanylate cyclase (GGDEF domain)
           [Escherichia coli UMN026]
 gi|291427217|gb|EFF00244.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298278098|gb|EFI19612.1| yneF protein [Escherichia coli FVEC1302]
 gi|300358442|gb|EFJ74312.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1]
          Length = 472

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254
           G+       R   +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|88607360|ref|YP_505143.1| response regulator PleD [Anaplasma phagocytophilum HZ]
 gi|88598423|gb|ABD43893.1| Response regulator/GGDEF domain protein PleD [Anaplasma
           phagocytophilum HZ]
          Length = 456

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 9/163 (5%)

Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +++S  D L+G  N   F       ++     ++ LS++  DID+FKQ+ND+ GH VGD+
Sbjct: 292 AEMSIRDSLTGCYNRRYFEMHFQNILNESQEKDKPLSVMLLDIDHFKQVNDSLGHQVGDE 351

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  +  ++         + R GGEEF      +  +EA ++A+ LR+II  S    S+G
Sbjct: 352 ILQQICKRIFNSIRISDLLARYGGEEFVIIMPETCIEEATLVADRLRRIIAESPFTTSAG 411

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           P ++ T+S G A     E    ++ RAD+ LYVAKK+ RN VV
Sbjct: 412 P-LNKTLSIGAANLRSGETAEQLLTRADKLLYVAKKT-RNSVV 452


>gi|83593846|ref|YP_427598.1| diguanylate cyclase [Rhodospirillum rubrum ATCC 11170]
 gi|83576760|gb|ABC23311.1| Putative diguanylate cyclase (GGDEF domain) [Rhodospirillum rubrum
           ATCC 11170]
          Length = 686

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 94/180 (52%), Gaps = 18/180 (10%)

Query: 93  LFISYNRISQ----------LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFD 135
           +F S+N ISQ          L+  D L+GL N    + +L S       Y   LS++  D
Sbjct: 493 VFASFNDISQTKALERELRALAERDSLTGLANRLRVMDALRSEFDRVTRYGGALSVMMLD 552

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D FK +ND  GH  GD+ +   +   +    T   +GR GGEEF     G++   A ++
Sbjct: 553 LDRFKVLNDRHGHVCGDEALRHFAASALATLRTNDLLGRSGGEEFIVLLPGAALGAAKLI 612

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              LR  +++  ++   G S+ +++S G+A R   +   +++ RADQAL++AK +GRNR+
Sbjct: 613 GERLRAAVQDKPLSW-QGRSVALSVSIGLASRQIGDTPDSLLGRADQALHLAKANGRNRL 671


>gi|161519719|ref|YP_001583146.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia multivorans
           ATCC 17616]
 gi|189354100|ref|YP_001949727.1| putative diguanylate cyclase protein [Burkholderia multivorans ATCC
           17616]
 gi|160343769|gb|ABX16854.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia multivorans
           ATCC 17616]
 gi|189338122|dbj|BAG47191.1| putative diguanylate cyclase protein [Burkholderia multivorans ATCC
           17616]
          Length = 312

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 97/181 (53%), Gaps = 13/181 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           + +E   +  ++ + +  D L+G+ N   F + LG        Y   LS++ FD+D+FK 
Sbjct: 135 MQREREEAVAKLREHANRDGLTGIANRRYFETRLGEEFARWQRYGGDLSMLLFDLDHFKA 194

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH VGD V+   + ++  +       GR GGEEFA     ++ +EA  +A+ +R 
Sbjct: 195 INDRFGHAVGDAVLRETARRVAAIVRAQDTFGRFGGEEFALLLPCTNLEEALQVADKVRD 254

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK--EP-ISTIIYRADQALYVAKKSGRNRVVCF 258
            I  + ++ + G S+ +T S G A  C K  +P    ++  AD ALY AK+ GR+R V +
Sbjct: 255 AIGRTPVD-AEGVSVAVTASVGAA--CAKLGQPACDALVNDADAALYRAKRLGRDRSVGY 311

Query: 259 S 259
           +
Sbjct: 312 A 312


>gi|157373347|ref|YP_001471947.1| GGDEF domain-containing protein [Shewanella sediminis HAW-EB3]
 gi|157315721|gb|ABV34819.1| GGDEF domain [Shewanella sediminis HAW-EB3]
          Length = 396

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 19/167 (11%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+GL +  A  + + S   K S+   DID+FK+ ND +GH VGD+V+  ++ ++  V 
Sbjct: 229 DELTGLASRRALYNLVLSLGRKYSVAMLDIDHFKKFNDTYGHDVGDQVLKLVAAKMARVS 288

Query: 167 GTPMFVGRLGGEEFA---------------AAALGSSEQEAAILANDLRK---IIENSQI 208
           G    V R GGEEF                     S E+   +L +D RK     + +  
Sbjct: 289 GGGK-VFRYGGEEFTIVFPRKDTDSVIDHLEDVRESIEEYRIVLRDDKRKRSTKAKRNAA 347

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           N S+  ++ +TIS G+AER   E     + +AD+ALY AKK GRN++
Sbjct: 348 NKSNKKTVSVTISIGVAERLGGETFDQTLKQADEALYRAKKKGRNQI 394


>gi|330808281|ref|YP_004352743.1| sensory box GGDEF domain-containing protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327376389|gb|AEA67739.1| putative sensory box GGDEF domain-containing protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 308

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 8/167 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y   +Q +  D L+G  N  A   +L         +++ LS++  DID+FK+IND+ GH 
Sbjct: 140 YRAATQSALRDPLTGTGNRIAMDQTLMREIDMAKRHSQPLSVLMLDIDHFKRINDSHGHG 199

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+V+  +++ +         V R GGEEF      +S   AA++   LR   + +Q  
Sbjct: 200 VGDEVLKAVAESIKSQLRNVDMVFRFGGEEFLILLANTSRDAAAMVGERLRYAAQ-TQDY 258

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            ++G  I +T+S G A     E   +++ RAD ALYVAK+ GRNR+ 
Sbjct: 259 FAAGTRIELTVSLGCATLLPGESSESLLRRADSALYVAKREGRNRLA 305


>gi|170722309|ref|YP_001749997.1| GAF sensor-containing diguanylate cyclase [Pseudomonas putida W619]
 gi|169760312|gb|ACA73628.1| diguanylate cyclase with GAF sensor [Pseudomonas putida W619]
          Length = 345

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 92/173 (53%), Gaps = 8/173 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +  +R  + + +D L+ L N +   +            +++L  ++ D+D+FK IN
Sbjct: 168 RDLRLEMDREQRKAMLDPLTQLWNRNGLTAFQDHERRRAAQSSQRLGAIYADLDHFKSIN 227

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD+V+   + +L         V R GGEEF A  + +  +E   +A  +R++I
Sbjct: 228 DRYGHASGDQVLCECARRLRAALRPDDLVVRQGGEEFVALVMVNDSEELKGIAERVRQMI 287

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  + +S+GP + +++S G       E +   + RAD  LY AK++GR+RVV
Sbjct: 288 GSEPVQLSTGP-LRVSLSIGCTLLNDDEHLDQALERADTGLYSAKQNGRDRVV 339


>gi|187478625|ref|YP_786649.1| signaling membrane protein [Bordetella avium 197N]
 gi|115423211|emb|CAJ49742.1| putative signaling membrane protein [Bordetella avium 197N]
          Length = 345

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 9/164 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           R+     +D L+GL N  +F   L        +E  +++  DID+FK IND +GH VGDK
Sbjct: 179 RLRDDRDVDGLTGLWNRRSFDERLERLIARVASEPHALLLIDIDHFKSINDRYGHAVGDK 238

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212
           V+  +S  +    G+    GR+GGEEF A  + +   EA  LA  L +++  + + ++  
Sbjct: 239 VLRIVSKLIQGCAGSQALTGRVGGEEF-AIVVPAGLAEAHELARRLNRLLTETLVSDLDE 297

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G    IT+S G+      + +S+ + RAD  LY AK+ GRNR+V
Sbjct: 298 GHV--ITLSTGLTMLQLGDTVSSWMRRADTLLYQAKRDGRNRIV 339


>gi|227326895|ref|ZP_03830919.1| hypothetical protein PcarcW_06049 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 444

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 73/130 (56%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           N  LSI   DID+FK +ND +GH  GD ++  +++ L        +V R GGEEF    +
Sbjct: 310 NTSLSIAMIDIDHFKTVNDTYGHAAGDNILKRIAEILYESTRNSDYVFRYGGEEFMIVLI 369

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            + +  A  +   LRK I++  I++ +G S+ +TISAGIA          +I  AD ALY
Sbjct: 370 ETPKVAAHTIIERLRKKIQDHPIHLQNGESVTMTISAGIAVYSGHPDYECLIKAADDALY 429

Query: 246 VAKKSGRNRV 255
            AK +GRNR+
Sbjct: 430 QAKANGRNRI 439


>gi|153837525|ref|ZP_01990192.1| ggdef family protein [Vibrio parahaemolyticus AQ3810]
 gi|149749121|gb|EDM59926.1| ggdef family protein [Vibrio parahaemolyticus AQ3810]
          Length = 337

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 88/155 (56%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D LS L N  AF + L    + N+ ++++  DID+FK  NDN+GH  GD V+  ++ +L 
Sbjct: 181 DGLSNLYNRRAFDTDLSMLINTNQAMTLILLDIDHFKAFNDNYGHLFGDTVLKAIARRLQ 240

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH-ITIS 221
                 +   R GGEEFA      S +     A+ LR++IE  ++ +  SG  +H IT S
Sbjct: 241 QSCRDGVSAYRFGGEEFALIVPNKSLRITRQYADTLRRMIEKLRVRDKRSGTQVHSITAS 300

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+AE    + + +++ +AD+ LY AK+ GRNRV+
Sbjct: 301 FGVAEFEVGDTVDSLVNKADKQLYEAKQLGRNRVM 335


>gi|152997837|ref|YP_001342672.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150838761|gb|ABR72737.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 452

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 10/161 (6%)

Query: 102 QLSRIDCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +L+  D L+G  N   +        +L +     S++  D+D+FK+IND  GH VGD V+
Sbjct: 294 ELATRDKLTGAFNRHKWDEQIKDELALANRGHHFSLILLDVDHFKKINDAHGHDVGDNVL 353

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L + L         + R+GGEEFA     ++ ++A +LA  LRK IE   +N    PS
Sbjct: 354 KLLVNTLRKRLRETDMLFRIGGEEFAVLLRDTNCEDAGVLAEQLRKKIET--LNEGGMPS 411

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              TIS G+ +    +  S I+ RAD  LY AK +GRNRV+
Sbjct: 412 --FTISLGVTDYQDFDDQSRIVKRADILLYEAKGAGRNRVM 450


>gi|262371886|ref|ZP_06065165.1| diguanylate cyclase (GGDEF) domain-containing protein
           [Acinetobacter junii SH205]
 gi|262311911|gb|EEY92996.1| diguanylate cyclase (GGDEF) domain-containing protein
           [Acinetobacter junii SH205]
          Length = 301

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 90/174 (51%), Gaps = 12/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           +EL  +   + +L+R D L+ L N  A    L          +   +++  D+D+FK++N
Sbjct: 130 QELEQANIELEKLARYDALTELYNRHALTDYLDYLYAQFARSHLAYAVLLMDVDFFKKVN 189

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGD V+  ++ QL        FV R GGEEF      +S + A  LA +LR+ +
Sbjct: 190 DQYGHEVGDFVLKSVAQQLSSTVRESDFVARYGGEEFVVLLPATSLEGAVALAENLRQAV 249

Query: 204 ENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           EN+ I +   P   I+IS G++  +         + RADQ LY AK  GRNRV+
Sbjct: 250 ENAPI-LDHHP---ISISIGVSVVQAGDSDAQAAMRRADQYLYQAKAQGRNRVI 299


>gi|118581094|ref|YP_902344.1| PAS/PAC sensor-containing diguanylate cyclase [Pelobacter
           propionicus DSM 2379]
 gi|118503804|gb|ABL00287.1| diguanylate cyclase with PAS/PAC sensor [Pelobacter propionicus DSM
           2379]
          Length = 505

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 13/165 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + + S  D L+ L N           ++    +   L+++  DID+FK+IND FGH  GD
Sbjct: 329 LREASERDPLTSLYNRRKLYQLLTVELTRTRRHGHPLTLMLLDIDHFKRINDTFGHDSGD 388

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  +++ +  +  +   + R GGEEF  A   +    AA+LA  +R     S I + S
Sbjct: 389 LVLTQVAELISAILRSTDILARYGGEEFVIACPETDMDGAAVLAEKIR-----SSIAMFS 443

Query: 213 GPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            P++  +TIS GI+    K+ I+ +I RAD ALY AK+ GRNRVV
Sbjct: 444 FPTVGAVTISVGISLLESKDDINALIKRADTALYAAKEMGRNRVV 488


>gi|312958749|ref|ZP_07773269.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           fluorescens WH6]
 gi|311287292|gb|EFQ65853.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           fluorescens WH6]
          Length = 556

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 10/157 (6%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +  L          N+ LS    DID+FK++ND+ GHP+GD+VI  L+
Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRARRENKPLSFAMLDIDHFKRVNDSHGHPMGDRVIKSLA 438

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L        ++GR GGEEFA     +  + A  + +++R     ++I+  + P  +  
Sbjct: 439 LFLKQRLRKTDYIGRYGGEEFAIVMPDTDLESACKVLDEIRGRF--AEIHYPAQPQDLWC 496

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T SAG+ E C       +  +AD+ALY AK +GRNRV
Sbjct: 497 TFSAGLVELCDDSDSLMMAAQADEALYRAKGAGRNRV 533


>gi|301018651|ref|ZP_07182978.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
 gi|300399597|gb|EFJ83135.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
          Length = 472

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254
           G+       R   +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|238755051|ref|ZP_04616399.1| Diguanylate cyclase [Yersinia ruckeri ATCC 29473]
 gi|238706755|gb|EEP99124.1| Diguanylate cyclase [Yersinia ruckeri ATCC 29473]
          Length = 372

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 92/185 (49%), Gaps = 14/185 (7%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIV 132
           LLG+++    K L  +   + ++S  D L+GL N        H+ F  S   Y    S+V
Sbjct: 188 LLGWVTFHTAKRLVENKEELLRISVRDGLTGLYNRRHWEHQLHNQF-DSCRRYKHCSSLV 246

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQE 191
             DID FK IND +GH VGD  I  L+++L++       VGR GG+EF A    ++ EQ 
Sbjct: 247 LIDIDQFKTINDTYGHTVGDDAITVLAEELLLGLRAIDIVGRYGGDEFGAILPNTTAEQA 306

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250
             +L     K+ E   I     P + + ISAG+AE +         +   D ALY AK +
Sbjct: 307 REVLTRIQGKLAE---IEFKQSPGLQLKISAGVAEFKPEMANYQQWLKAVDSALYHAKNN 363

Query: 251 GRNRV 255
           GR+R+
Sbjct: 364 GRDRI 368


>gi|78060867|ref|YP_370775.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. 383]
 gi|77968752|gb|ABB10131.1| diguanylate cyclase (GGDEF domain) [Burkholderia sp. 383]
          Length = 312

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 95/181 (52%), Gaps = 13/181 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           + +E   +  ++ + +  D L+G+ N   F + LG        Y   +S++ FD+D+FK 
Sbjct: 135 MQREREEAVAKLREHANRDGLTGIANRRFFEARLGDEFSRWQRYGGDMSVLLFDLDHFKT 194

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH  GD V+   + ++  +       GR GGEEFA     ++  EA ++A+ +R 
Sbjct: 195 INDRFGHAAGDAVLRETARRVAAIVRAQDTFGRFGGEEFALLLPCTNLDEAMLVADKVRD 254

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCF 258
            I +  ++ + G S+ +T S G A  C K    T   ++  AD ALY AK+ GR+R V +
Sbjct: 255 AIGSMPVD-AEGVSVPVTASVGGA--CAKTGAPTCDVLVNEADAALYRAKRLGRDRSVAY 311

Query: 259 S 259
           S
Sbjct: 312 S 312


>gi|73538689|ref|YP_299056.1| GGDEF [Ralstonia eutropha JMP134]
 gi|72122026|gb|AAZ64212.1| GGDEF [Ralstonia eutropha JMP134]
          Length = 532

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 85/171 (49%), Gaps = 15/171 (8%)

Query: 101 SQLSR------IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
            QLSR      ID L+G+ N   F       +S      E++ ++  D+D FKQ ND +G
Sbjct: 348 EQLSRVQADLDIDALTGIPNRRYFQREAMLAVSRAFERREEMGLLILDVDLFKQYNDLYG 407

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           HP GD+ +  ++  L  +     F  RLGGEEFA     S+++E   +A  + + +    
Sbjct: 408 HPRGDECLRQVAAALTRMLAGTQFCARLGGEEFAVVLPASTQEETRTVARAMVEAVRELG 467

Query: 208 INISSGPSIHI-TISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
           I     P   I TIS G        P +  +++RAD A+Y AK++GRNR V
Sbjct: 468 IPHHGTPVQPIVTISVGAVCAAPDAPRLEPLLHRADSAMYQAKRAGRNRFV 518


>gi|326794922|ref|YP_004312742.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326545686|gb|ADZ90906.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 384

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/200 (35%), Positives = 104/200 (52%), Gaps = 19/200 (9%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISS 121
           +SL++++I + +LL      ++   FI  NR    +  D LSGLLN        +  +++
Sbjct: 195 VSLMLLAINVLVLL------LVSRKFI--NRFHFCAIKDELSGLLNRRYLNEISAKVMAN 246

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             + N  +S++FFDID FK IND +GH  GD V++ L   +           R GGEEF 
Sbjct: 247 AQTNNRSISLLFFDIDLFKSINDKYGHHAGDLVLSQLGSIVKEFTRMNDLSFRYGGEEFV 306

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYR 239
               G    EA   ANDLR+ IE S  ++     I +T+S G+A     E   I  +I+R
Sbjct: 307 LIYEGDV-HEAERFANDLRQYIEKSAFDLGIA-QIQLTVSIGVATNQSHETHSIKDLIFR 364

Query: 240 ADQALYVAKKSGRNRVVCFS 259
           AD A+Y AK +GRN +  +S
Sbjct: 365 ADAAMYQAKAAGRNCIRVYS 384


>gi|221134190|ref|ZP_03560495.1| response regulator receiver modulated diguanylate cyclase
           [Glaciecola sp. HTCC2999]
          Length = 323

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 88/169 (52%), Gaps = 9/169 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148
            YN++ + S  D L+G+ N   F   L         ++  + I +FD+D+FK IND  GH
Sbjct: 141 QYNQLQKESLTDVLTGISNRRHFKDILKKEMVKAQRHDRAMCIAYFDLDHFKAINDGLGH 200

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+V+  +S  +          GRLGGEEF      +S  EA I +   R +IE   I
Sbjct: 201 DAGDEVLRKVSSAISETLRAEDSFGRLGGEEFCICMPDTSLNEALIPSERYRLMIEKLTI 260

Query: 209 NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             ++ P I++T S G+ E +     I++++  AD+ALY +K  GRN+V 
Sbjct: 261 EYNNKP-INVTASFGVTEFKPFLHDINSLLAHADEALYKSKHQGRNQVT 308


>gi|86609720|ref|YP_478482.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558262|gb|ABD03219.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 364

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 89/179 (49%), Gaps = 15/179 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEK----LSIVFFDIDYF 139
           ++L      +  LS  D L+G LN  A   +L       G   E     L ++  D+D+F
Sbjct: 171 RQLRARNELLESLSLTDPLTGALNRRALDQALPHLLKQVGPRGEARYRYLCLLMMDVDHF 230

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQ+ND++GH +GD V+  +  +L         + R GGEEF     G S       A  L
Sbjct: 231 KQVNDSYGHYIGDCVLQAIVGRLQNQLRPSSLLYRYGGEEFVCVTPGLSPPRCGRYAESL 290

Query: 200 RKIIENSQINISSGPSIHITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           R+ I    I+IS   S+ +TIS G   ++E    EP  T + +AD ALY AK++GRNRV
Sbjct: 291 RQAIAKRPIDISPKRSLPVTISIGGIVLSEDYCPEP-ETALQQADSALYQAKQAGRNRV 348


>gi|302343938|ref|YP_003808467.1| 7TM domain sensor diguanylate cyclase [Desulfarculus baarsii DSM
           2075]
 gi|301640551|gb|ADK85873.1| 7TM domain sensor diguanylate cyclase [Desulfarculus baarsii DSM
           2075]
          Length = 576

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 103/216 (47%), Gaps = 17/216 (7%)

Query: 58  FYGLEY-------ILVENLSLVIISITISLLLG-YISG-SILKELFISYNR-ISQLSRID 107
            YGL Y       +    L     S+ +SL L   I G  + +E  +   R ++  +  D
Sbjct: 358 LYGLGYLPSSMLTVHAAGLGAAAESVLLSLALADRIRGLRVDREALLERQRGLAHQAVTD 417

Query: 108 CLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+GL N    +  L           + LS+  FD+D+FK+ ND+FGHP GD+V+A +  
Sbjct: 418 ELTGLYNKRYLLGDLKESVKRAAQGGQPLSVALFDVDHFKRFNDSFGHPKGDEVLAAMGH 477

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            +           R GGEEF      +   +A  +A  +R  I   +  + +     +T+
Sbjct: 478 DIRGCVRDGDKGCRYGGEEFVVILPMAGLDQALAVAERVRGAIARRRFAVDADQWASVTV 537

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           SAG+A     E  + ++ RAD+ALYVAK++GR+R V
Sbjct: 538 SAGVACLRAGENAAELLDRADKALYVAKRAGRDRTV 573


>gi|121998088|ref|YP_001002875.1| diguanylate cyclase [Halorhodospira halophila SL1]
 gi|121589493|gb|ABM62073.1| diguanylate cyclase [Halorhodospira halophila SL1]
          Length = 559

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 19/171 (11%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q ++ D L+GLLN S     + +         + L+++  D+D+FK++ND  GH VGD
Sbjct: 395 LDQQAQHDRLTGLLNRSGLDQQIATQVAQHQETGKPLAMLLIDLDHFKRVNDEHGHAVGD 454

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQI 208
           K++  L+DQL         VGR GGEEF     A  L  ++Q     A+ LR+ + +  +
Sbjct: 455 KILRHLADQLRAGVREADIVGRWGGEEFVILLPATGLDGAQQS----ADKLRRALADHPV 510

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               G    +T S G++    ++    +  RAD ALY AK  GRNRV   S
Sbjct: 511 LRQHG----LTASFGVSVLASEDSDRDLFERADCALYAAKHQGRNRVSIVS 557


>gi|323494656|ref|ZP_08099759.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
 gi|323311089|gb|EGA64250.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
          Length = 338

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 90/162 (55%), Gaps = 5/162 (3%)

Query: 100 ISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           + Q +  D L+ L N  AF   I++L    +K+ +V  DID+FK  ND +GH  GD VI 
Sbjct: 175 VQQDALFDSLTSLYNRRAFDGDINTLCRSEQKMCLVLADIDHFKTFNDTYGHLFGDTVIK 234

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPS 215
            ++ +L +     +   R GGEEFA      S + A   A  +R+ +E  S  +  +G S
Sbjct: 235 GIARRLQLSCRDGIHAYRFGGEEFALIVPNKSLRIARQFAESIRRTVEKLSVKDRRTGQS 294

Query: 216 I-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           I +ITIS G+AE    E   ++I RAD+ LY AK+ GRNRV+
Sbjct: 295 IGNITISLGVAELEPGESPESLIERADKLLYEAKQLGRNRVM 336


>gi|91777509|ref|YP_552717.1| diguanylate cyclase [Burkholderia xenovorans LB400]
 gi|91690169|gb|ABE33367.1| periplasmic sensor diguanylate cyclase (GGDEF domain) [Burkholderia
           xenovorans LB400]
          Length = 591

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 92/183 (50%), Gaps = 18/183 (9%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139
           G +++EL  +       +  D L+ LLN  AF S          +   +L+++ FDID+F
Sbjct: 409 GRLIQELKAT-------AETDFLTHLLNRRAFESRARLSCAERNAAEPELALIMFDIDHF 461

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND +GH  GD  +  ++            V R GGEEFA  +      +A  +A  L
Sbjct: 462 KKINDTYGHATGDHALQLVARLCRETCRQADVVARWGGEEFAVLSRVQDAAQALAVAERL 521

Query: 200 RKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R  I  ++I +S G   +IT S G+  A  C    +  +  RAD+ LY AK++GR+R+  
Sbjct: 522 RCRIRETRIPVSGGDGFNITASFGVAFASACDSRDVDRLFRRADRLLYQAKEAGRDRI-- 579

Query: 258 FSD 260
           F+D
Sbjct: 580 FAD 582


>gi|150396149|ref|YP_001326616.1| response regulator PleD [Sinorhizobium medicae WSM419]
 gi|150027664|gb|ABR59781.1| response regulator receiver modulated diguanylate cyclase
           [Sinorhizobium medicae WSM419]
          Length = 455

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 87/177 (49%), Gaps = 9/177 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
            L  S  +  +L+  D L+GL N           I   G+    LSI   DID FK++ND
Sbjct: 278 RLRASVQQTIELAVTDDLTGLHNRRYLENHLKLLIDRAGARGRPLSICITDIDRFKRVND 337

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD V+   ++++           R GGEEF      ++ + AAI+A  LR  +E
Sbjct: 338 TYGHDAGDDVLREFANRVRATVRGADLACRFGGEEFVVVMPDTTPEMAAIVAERLRLSVE 397

Query: 205 NSQINISSGPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +   +I+   ++  +T S GIA  R   +    ++ RAD ALY AK  GRNRVV  +
Sbjct: 398 SRGFDIAEAATVLTVTASLGIASLRPDGDTAEALLKRADMALYEAKNGGRNRVVAAA 454


>gi|94268695|ref|ZP_01291258.1| PAS:GGDEF:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|94270596|ref|ZP_01291777.1| PAS:GGDEF:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|93450745|gb|EAT01809.1| PAS:GGDEF:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|93451500|gb|EAT02327.1| PAS:GGDEF:Response regulator receiver [delta proteobacterium
           MLMS-1]
          Length = 469

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 101/220 (45%), Gaps = 19/220 (8%)

Query: 46  ANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE--LFISYNRISQL 103
             IF +++  TPF G       +L  ++  IT       I+  +L E  L  S  R  +L
Sbjct: 258 GEIFHYHVLATPFKGP----AGDLLGIVEHITD------ITSRVLAEQALQKSEQRYKEL 307

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S +D L+GL N   F       +     Y   LS++  DID FK  ND +GHP GD+V++
Sbjct: 308 SIVDELTGLFNKRYFNKHLRLEVERARRYQHPLSLLIMDIDNFKHYNDTYGHPAGDRVLS 367

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            L   L           R GGEEF      +  +    LA  LR+     +     G  I
Sbjct: 368 ALGGMLRDSMRLNDLACRFGGEEFVVILPMTDGETGLKLAERLRERFAALEFQPLEGVVI 427

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             T+S G+A+   +E   +++ RAD+ LY AK +GR+R +
Sbjct: 428 RKTMSVGVAQFEDEESPESLLARADKNLYAAKAAGRDRSI 467


>gi|85710903|ref|ZP_01041964.1| putative two-component hybrid sensor and regulator [Idiomarina
           baltica OS145]
 gi|85695307|gb|EAQ33244.1| putative two-component hybrid sensor and regulator [Idiomarina
           baltica OS145]
          Length = 548

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 80/157 (50%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G  N   F  +L +       Y E L+IV FDID+FK+INDNFGH  GD+V+  L 
Sbjct: 392 DPLTGAYNRRFFTEALETLVYRSERYEESLAIVTFDIDHFKRINDNFGHEAGDRVLIELV 451

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L  +        R GGEEF+      + Q+A   A   R  +E   I  S G  I +T
Sbjct: 452 QTLGRLVRESDIFARTGGEEFSLLLPNQTLQQATRTAERFRAALEALVIR-SEGHEIQVT 510

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S G+A   +    + ++  AD+ALY AK  GRN VV
Sbjct: 511 ASFGVAIHHNGATHNEVLRHADKALYAAKSRGRNCVV 547


>gi|307317852|ref|ZP_07597290.1| response regulator receiver modulated diguanylate cyclase
           [Sinorhizobium meliloti AK83]
 gi|306896614|gb|EFN27362.1| response regulator receiver modulated diguanylate cyclase
           [Sinorhizobium meliloti AK83]
          Length = 455

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 9/177 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
            L  S  +  +L+  D L+GL N           I    +    LSI   DID FK++ND
Sbjct: 278 RLRASVQQTIELAVTDDLTGLHNRRYLENHLKLLIDRATTRGRPLSICITDIDRFKRVND 337

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD V+   ++++           R GGEEF      ++ + AAI+A  LR  +E
Sbjct: 338 THGHDAGDDVLREFANRVRATVRGADLACRFGGEEFVVVMPDTTPEMAAIVAERLRLAVE 397

Query: 205 NSQINISSGPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +   +I    ++ ++T S GIA  R H +    ++ RAD ALY AK  GRNRVV  +
Sbjct: 398 SRGFDIPQAATVLNVTASLGIATLRPHGDTAEALLKRADMALYQAKNGGRNRVVAAA 454


>gi|289435260|ref|YP_003465132.1| GGDEF domain protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171504|emb|CBH28048.1| GGDEF domain protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 378

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 90/167 (53%), Gaps = 11/167 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
            + Q + +D L+GL N   F     S           L+++  DIDYFK++ND +GH VG
Sbjct: 204 ELQQSTILDPLTGLSNFRHFEQMFDSAFQYAAMKKANLNLIIIDIDYFKRVNDTYGHLVG 263

Query: 152 DKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           + V++  S  L+ + F     + R+GGEEFA      S  E   LA  +RK +E  +  I
Sbjct: 264 NSVLSTFSQMLLKISFPPNTVIARIGGEEFAIILPNISASETEHLAEKIRKKVEKIEFPI 323

Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
            +  S+ ITISAGIA       ++   ++  ADQALY AK++GRN+V
Sbjct: 324 VATGSV-ITISAGIANYNGSNYLTPEALLQAADQALYNAKRNGRNQV 369


>gi|241113039|ref|YP_002972874.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240861247|gb|ACS58913.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 405

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 105/197 (53%), Gaps = 20/197 (10%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKL------SI 131
           + LL     S L EL  + +++  L+R D L+G+ N  + + +L   ++E L      ++
Sbjct: 205 TFLLELRDRSRLAELTDANSQLELLARTDPLTGVANRRSMMETLHYFWSEDLKRTSGAAM 264

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF-----VGRLGGEEFAAAALG 186
           +  DID FK +NDN GH  GD+ +     ++  +  + M      V R GGEEF     G
Sbjct: 265 LMCDIDDFKHLNDNLGHAEGDRCLV----KVAGIIQSSMRDERDQVARYGGEEFLVFLPG 320

Query: 187 SSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIST---IIYRADQ 242
           S EQEA ++A  +R  +E + + N +S    ++T+S G+A       + +   +  +AD 
Sbjct: 321 SDEQEAKVVAERIRSRVEAASLPNPTSRVVAYVTVSIGVATMMQDSELVSAEHMQRQADA 380

Query: 243 ALYVAKKSGRNRVVCFS 259
           ALY+AKK+GRNRVV  +
Sbjct: 381 ALYLAKKTGRNRVVVHA 397


>gi|294140132|ref|YP_003556110.1| GGDEF domain-containing protein [Shewanella violacea DSS12]
 gi|293326601|dbj|BAJ01332.1| GGDEF domain protein [Shewanella violacea DSS12]
          Length = 407

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 94/175 (53%), Gaps = 11/175 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           + +   +   L++ D L+G+ N         ++FI +  S  E  S++ FD+D+FK+IND
Sbjct: 216 MAMQKRKYKMLAQHDALTGIFNRGTAQNIAENSFIKA-ASKREMFSVIMFDLDFFKRIND 274

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH  GD V+  ++D +     +     R GGEEFA     + E +A  +A + R+IIE
Sbjct: 275 NYGHGTGDWVLKKVADMINKASRSDDIFARFGGEEFALFLPDTDEAKANAMAEEYRRIIE 334

Query: 205 NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           + +    SG S  IT S G+      +  +  +++RAD A+Y +K+ GRN V  +
Sbjct: 335 SIETKF-SGHSFAITASFGVTSSGEDDLSLDPLLHRADIAMYHSKELGRNCVTAY 388


>gi|320195540|gb|EFW70165.1| hypothetical protein EcoM_01965 [Escherichia coli WV_060327]
          Length = 472

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK I+DN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSISDNYGHECGDKVLSVFAQHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254
           G+   C       +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|239995359|ref|ZP_04715883.1| diguanylate cyclase [Alteromonas macleodii ATCC 27126]
          Length = 627

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 85/165 (51%), Gaps = 12/165 (7%)

Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+ +D L+G+ N  + + ++        SY   LS+V  D+D FK+INDN+GH  GD ++
Sbjct: 464 LATVDTLTGVRNRRSLLGAVQLELNEAKSYKNDLSLVLIDLDNFKEINDNYGHECGDDLL 523

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
               + +          GR GGEEF      +S  EA  + N     I +S   +   P+
Sbjct: 524 KAFCEHVSKCIRKTDTFGRYGGEEFILCLPKTSAAEAKKVVNS----ILDSYRKVRISPN 579

Query: 216 IHI-TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I   T SAGIA+       S +I + D+ALYVAK+ GRNRV  FS
Sbjct: 580 ISAQTFSAGIAQYQTGIETSNLIKQCDEALYVAKRFGRNRVCIFS 624


>gi|167034562|ref|YP_001669793.1| diguanylate cyclase [Pseudomonas putida GB-1]
 gi|166861050|gb|ABY99457.1| diguanylate cyclase [Pseudomonas putida GB-1]
          Length = 460

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 88/169 (52%), Gaps = 13/169 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISS----LGSYNE-----KLSIVFFDIDYFKQINDNFGHP 149
           R+++ + ID L+G+L  SAF       L S  +      L+++  DID+FK +ND  GH 
Sbjct: 283 RLARQATIDHLTGVLTRSAFTRRANALLDSRQQHAQALPLTLMMLDIDHFKSVNDAHGHA 342

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+V+   +  L           RLGGEEFA    G + + A   A  LR+ +++  + 
Sbjct: 343 VGDQVLRQFAGTLQDQLHNDELFARLGGEEFAVIIPGLAPERAKFTAERLRRAVQDLHV- 401

Query: 210 ISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRV 255
           + +   + IT+S G+A      P   +  ++  ADQALY AK  GRNRV
Sbjct: 402 MQADQRLQITVSIGLAGCDADMPAPSLDELLASADQALYRAKAHGRNRV 450


>gi|119469343|ref|ZP_01612282.1| hypothetical protein ATW7_07819 [Alteromonadales bacterium TW-7]
 gi|119447207|gb|EAW28476.1| hypothetical protein ATW7_07819 [Alteromonadales bacterium TW-7]
          Length = 387

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 109/208 (52%), Gaps = 18/208 (8%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           LE IL  +L L   S   +LLL Y+  S  +      + ++ ++  D LS L N   F  
Sbjct: 183 LELILSSHLILATCS---ALLLPYLLASNTE------HTLASIANTDVLSQLFNRRGFFM 233

Query: 121 ------SLGSY-NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                 SL  Y N+ +S++  DID+FK++ND +GH  GD+ I +++  +   F       
Sbjct: 234 KGKNALSLSLYQNKNISLILLDIDFFKRVNDTYGHEAGDQAIKWIAQHIKSQFLNEEISA 293

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-P 232
           R+GGEEFA      S  +A   A +LR+ I         G  I++++SAG++   + E  
Sbjct: 294 RIGGEEFAILLPNCSLSDARNNAEELRESISCYPF-YYEGHDINLSVSAGVSSTLNGEQT 352

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSD 260
           I  ++  AD+ LY+AK++GR++VV + +
Sbjct: 353 IKELLANADKRLYLAKETGRDKVVTYDE 380


>gi|330000912|ref|ZP_08303856.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
 gi|328537844|gb|EGF64036.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
          Length = 559

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 107/203 (52%), Gaps = 17/203 (8%)

Query: 69  LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------S 120
           L+L+ +  T+ LLL ++    +++ + +    +   +  D L+ LLN  A         S
Sbjct: 357 LTLMWVLFTLMLLLSWLVIRRMVRNMSVLQTSLEWQAWHDALTRLLNRGALFEQAMAVAS 416

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   L+++  D+D+FK IND +GH  GD+V++ ++  L         +GR+GGEEF
Sbjct: 417 DCQRSGRPLAVIQLDLDHFKHINDRYGHQAGDRVLSMVASTLSSAVRQGDLLGRVGGEEF 476

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-----EPIST 235
                 ++ QEAA +A  LR+ I+  ++ + +  ++ ++ S G++    +     E + +
Sbjct: 477 CIVMPNTTLQEAAAVAERLRQRIQGREVFLHNNVTLRVSASLGVSASEERGEYQFEALQS 536

Query: 236 IIYRADQALYVAKKSGRNRVVCF 258
           +   AD  LY+AK++GRN+ VCF
Sbjct: 537 V---ADGRLYLAKQNGRNQ-VCF 555


>gi|308071307|ref|YP_003872912.1| GGDEF domain protein [Paenibacillus polymyxa E681]
 gi|305860586|gb|ADM72374.1| GGDEF domain protein [Paenibacillus polymyxa E681]
          Length = 358

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 18/202 (8%)

Query: 67  ENLSLVIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----- 118
           +N S++II+ T  LL G   Y   S +K+   + + + + +  D L+GL +  AF     
Sbjct: 157 DNESMIIIT-TFKLLGGLFTYFMVSHIKKTERAVHLLEEAANRDHLTGLYSPRAFDVLFE 215

Query: 119 --ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
               +  +  +   +V  DID+FK IND +GH  GD V++ L   L     T  +  R G
Sbjct: 216 EVFHTSKTTKQPFGLVMLDIDHFKNINDTYGHLNGDTVLSQLGMLLTRESTTRAYPSRKG 275

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--- 233
           GEEFA        Q+ A  A  +RK +EN +  ++ G SI +T+S G        P+   
Sbjct: 276 GEEFAILIGNCDSQKVASFAEKIRKAVENERFLLNDGASIPLTVSIGAGS----SPVIAS 331

Query: 234 STIIYRADQALYVAKKSGRNRV 255
             ++ ++D+ALY AK+SGRN+V
Sbjct: 332 RHLLEKSDEALYEAKRSGRNQV 353


>gi|241206372|ref|YP_002977468.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860262|gb|ACS57929.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 385

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 90/169 (53%), Gaps = 7/169 (4%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           S N++++L+  D L+G LN       L +   + +S++  DID+FKQ+ND  GH  GD +
Sbjct: 215 SRNQLTELAHHDPLTGALNRGGLAQHLPALGFQPVSLLIIDIDHFKQLNDRHGHAAGDDI 274

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   +     +  +   + R GG+EF A    +S Q+A I+A  +R     + +     P
Sbjct: 275 LRLFASVSRSIMRSDDLLARQGGDEFLAVLKNASRQDAVIIAERIRLAFAAAVLQ---RP 331

Query: 215 SIHI--TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            + I  T+S G+A R         ++ +AD+ALY +K+ GRNRV  FS+
Sbjct: 332 DLAIFPTLSIGVAARAESGGDFERLMQKADEALYRSKREGRNRVEAFSE 380


>gi|15965047|ref|NP_385400.1| response regulator PleD [Sinorhizobium meliloti 1021]
 gi|307301119|ref|ZP_07580888.1| response regulator receiver modulated diguanylate cyclase
           [Sinorhizobium meliloti BL225C]
 gi|15074226|emb|CAC45873.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Sinorhizobium meliloti 1021]
 gi|306904074|gb|EFN34660.1| response regulator receiver modulated diguanylate cyclase
           [Sinorhizobium meliloti BL225C]
          Length = 455

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 9/177 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
            L  S  +  +L+  D L+GL N           I    +    LSI   DID FK++ND
Sbjct: 278 RLRASVQQTIELAVTDDLTGLHNRRYLENHLKLLIDRATTRGRPLSICITDIDRFKRVND 337

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD V+   ++++           R GGEEF      ++ + AAI+A  LR  +E
Sbjct: 338 THGHDAGDDVLREFANRVRATVRGADLACRFGGEEFVVVMPDTTPEMAAIVAERLRLAVE 397

Query: 205 NSQINISSGPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +   +I    ++ ++T S GIA  R H +    ++ RAD ALY AK  GRNRVV  +
Sbjct: 398 SRGFDIPQAATVLNVTASLGIATLRPHGDTAEALLKRADMALYQAKNGGRNRVVAAA 454


>gi|114567601|ref|YP_754755.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338536|gb|ABI69384.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 459

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 89/176 (50%), Gaps = 16/176 (9%)

Query: 90  LKELFISYNRISQLSRI-DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           L+EL    NRI Q+  I D L+GL NH   +  L         Y ++L+I+  DID+FK 
Sbjct: 292 LREL----NRILQVQAITDSLTGLYNHRQVLEKLQLEIARANRYQQELTIMMLDIDHFKS 347

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH VGD V+  ++  +          GR GGEEF      ++      +   +R+
Sbjct: 348 INDEFGHQVGDVVLVEVAQIIKRNLRNIDIAGRYGGEEFLIILPQTNLNNGRQVGERIRR 407

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +E   I         IT+S GI++   +E +   I RADQ LY AK+ GRNR+ C
Sbjct: 408 QVE---IEGFEDSKEGITVSIGISQHQGEEMVD-YIERADQLLYRAKRKGRNRIEC 459


>gi|330722115|gb|EGH00025.1| Signaling protein with a periplasmic binding domain and GGDEF
           domain [gamma proteobacterium IMCC2047]
          Length = 318

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 13/183 (7%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDN 145
           L  S  +I  ++  DC++GL N + F   L         Y+ + +++F D+D FK+IND 
Sbjct: 129 LVASERQIRDMAFTDCVTGLANRNLFTDRLDQMILDSKRYHHEFALLFIDLDGFKKINDT 188

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKII 203
           +GH VGDK++A   +++   F     V R GG+EF       G  +  A +    L+++ 
Sbjct: 189 YGHLVGDKLLAMTGERISASFRDSDIVARFGGDEFLVIVKNTGDVKAIAQVCGKLLKRLA 248

Query: 204 ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           E   I+        +T S GIA   CH    S +I  AD+A+Y AK++GRN  V  S+ +
Sbjct: 249 EPHYID---DLEFTVTASIGIAHYPCHATSSSRLIQMADKAMYKAKRAGRNCFVICSEEQ 305

Query: 263 NNT 265
           + T
Sbjct: 306 SET 308


>gi|261251533|ref|ZP_05944107.1| hypothetical protein VIA_001554 [Vibrio orientalis CIP 102891]
 gi|260938406|gb|EEX94394.1| hypothetical protein VIA_001554 [Vibrio orientalis CIP 102891]
          Length = 608

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 83/158 (52%), Gaps = 5/158 (3%)

Query: 102 QLSRIDCLSGLLNHSA-FISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           QLS  D L+GL N    F      ++  KLS +  DID+FK +ND +GH  GD+V+  +S
Sbjct: 450 QLSNTDFLTGLSNRRHIFEWGEAQFDRLKLSSIMLDIDHFKTLNDTYGHDFGDEVLKTVS 509

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +     +   VGR+GGEEF       S  + + LA D+R+ I   +        I +T
Sbjct: 510 SIVTKAARSADVVGRIGGEEFLILLPNVSRHQLSHLAEDIRQKIAQHRFTTPDHKEIQVT 569

Query: 220 ISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            S GI E  H+   +S  +  AD ALY AK+SGRNR V
Sbjct: 570 ASFGITE--HRSGSLSNQVNLADTALYNAKRSGRNRSV 605


>gi|170692779|ref|ZP_02883941.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M]
 gi|170142435|gb|EDT10601.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M]
          Length = 777

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 115/239 (48%), Gaps = 17/239 (7%)

Query: 36  SIFIATVIFIANIFLFY---IGLTP--FYGLEYILVENLSLVIISITISLLLGYISGSIL 90
            +++    F+    LFY   IGL P   +  +  +V  + +  I +  +++  +      
Sbjct: 126 PLWLTPTHFVVGSALFYAAAIGLLPSAPHTADVDVVVWMWIAAIGMPTAVVFHFGFYGFR 185

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQIND 144
           +  F+  ++++QL+  D L+GL N  AF++       +L      S +F DID FK +ND
Sbjct: 186 RNHFLLEDQLAQLAATDPLTGLQNRRAFVAQAERRLAELARGGEASAIFLDIDNFKSLND 245

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH VGD  +  ++  L+        V R+GGEEFA  +       A  LA  LR  I 
Sbjct: 246 RFGHAVGDLALRQVAQVLLEQTTRGDSVSRIGGEEFAVLSC-DGLAGALRLAERLRGAIA 304

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             +      P  H+T S G+AE    E I  ++ RAD+AL  AK+SGRNRV     + +
Sbjct: 305 ALER-----PDGHLTASFGVAEHRGDENIMVLLDRADEALLRAKQSGRNRVCAERPVPD 358


>gi|154685373|ref|YP_001420534.1| YhcK [Bacillus amyloliquefaciens FZB42]
 gi|154351224|gb|ABS73303.1| YhcK [Bacillus amyloliquefaciens FZB42]
          Length = 359

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 90/158 (56%), Gaps = 9/158 (5%)

Query: 107 DCLSGLLNHSAF--ISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+G+ N   F  +S +       S + +L++++ DID+FKQIND +GH  GD+V+  L
Sbjct: 195 DFLTGIFNKRKFEEVSRVLYDRASQSPSSQLALIYLDIDHFKQINDQYGHYEGDQVLKEL 254

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +L ++  +     R+GGEEFA      +  +   LA ++R  I+ + I ++SG +I +
Sbjct: 255 GARLRLLLSSSDPSARIGGEEFAVLMPNCTYTKGLHLAEEIRHTIDANPILLTSGDTIPV 314

Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T+S GIA    +     T+   AD+ LY AK SGRN+V
Sbjct: 315 TVSLGIAHYPTNTSDPQTLPLIADRMLYKAKTSGRNQV 352


>gi|120555850|ref|YP_960201.1| sensor diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120325699|gb|ABM20014.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 571

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 119/244 (48%), Gaps = 17/244 (6%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLT-PFYGLEYILVENLSLVIISITISLLLG 83
           H  + +F +  + F   V+F     L+Y GL  P Y   + +   + +V+ ++T++ ++ 
Sbjct: 325 HPLVKFFLVGHTFF---VVFNGFAVLYYKGLVQPNYINSHGV--GIGIVLEALTLAFIIS 379

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFD 135
           Y    +L+++    + + + +  D L+ L N   F++  G Y         E LS++  D
Sbjct: 380 Y-RIKVLEDIRSKQDELKRQASTDPLTRLFNRRYFMAE-GEYVLEQARTSGEPLSVIAID 437

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK +ND  GH VGD V+  ++            V R GGEEF     G+   E    
Sbjct: 438 IDHFKAVNDTHGHNVGDLVLVEVASVFRQFSRDRDLVARFGGEEFVILLPGADLTEGFGC 497

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  +R  +E   I+   G ++ +T+S G+AE     E +   + RAD++LY AK  GRNR
Sbjct: 498 AERIRNAVEAMVIDGGDGLAVRVTVSVGVAEVNPLLESVEGAVKRADRSLYEAKAGGRNR 557

Query: 255 VVCF 258
           V  F
Sbjct: 558 VCGF 561


>gi|134292515|ref|YP_001116251.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia vietnamiensis
           G4]
 gi|134135672|gb|ABO56786.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia vietnamiensis
           G4]
          Length = 313

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 15/182 (8%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           + +E   +  ++ + + +D L+G+ N   F + LG        Y   LS++ FD+D+FK 
Sbjct: 136 MQREREEAVAKLREHANVDGLTGIANRRYFEARLGDEFARWQRYGGDLSVLLFDLDHFKT 195

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH VGD V+   + ++  +       GR GGEEFA     ++  EA ++A+ +R 
Sbjct: 196 INDRFGHAVGDAVLRETARRVASIVRAQDTFGRFGGEEFALLLPCTNLDEALLVADKVRD 255

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVVC 257
            I ++ +  + G S+ +T S G A   +  P       ++  AD ALY AK+ GR+R V 
Sbjct: 256 AIGSTPVE-AEGVSVAVTASVGAA---YATPGLASCDVLVNGADTALYRAKRLGRDRSVA 311

Query: 258 FS 259
           F 
Sbjct: 312 FG 313


>gi|16077977|ref|NP_388793.1| diguanylate cyclase or phosphodiesterase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221308751|ref|ZP_03590598.1| hypothetical protein Bsubs1_05043 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313073|ref|ZP_03594878.1| hypothetical protein BsubsN3_04984 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317999|ref|ZP_03599293.1| hypothetical protein BsubsJ_04928 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322273|ref|ZP_03603567.1| hypothetical protein BsubsS_05029 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|1724005|sp|P54595|YHCK_BACSU RecName: Full=Uncharacterized protein yhcK
 gi|1239987|emb|CAA65695.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633235|emb|CAB12740.1| putative diguanylate cyclase or phosphodiesterase [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 359

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 92/167 (55%), Gaps = 12/167 (7%)

Query: 104 SRIDCLSGLLNHSAFISSLGS-YNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +  D L+G+ N   F  +  + Y +       + ++++ DID+FK IND +GH  GD+V+
Sbjct: 192 AHFDFLTGVYNRRKFEETTKALYQQAADTPHFQFALIYMDIDHFKTINDQYGHHEGDQVL 251

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L  +L           R+GGEEFA      S  +AA +A  +R  + ++ I +++G  
Sbjct: 252 KELGLRLKQTIRNTDPAARIGGEEFAVLLPNCSLDKAARIAERIRSTVSDAPIVLTNGDE 311

Query: 216 IHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + +TIS G A   +  ++P S  I  ADQ LY AK++GRNR VCFS+
Sbjct: 312 LSVTISLGAAHYPNNTEQPGSLPIL-ADQMLYKAKETGRNR-VCFSE 356


>gi|224369189|ref|YP_002603353.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223691906|gb|ACN15189.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 305

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 7/175 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
           +++ +L+  D L+GL N   F   L +       Y+  LS++  DID FK  ND +GH  
Sbjct: 131 DKLEELAITDGLTGLYNSRHFFCQLKAEIERYTRYHHPLSVLLLDIDLFKNYNDTWGHLE 190

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDKV+  + + +     +     R GGEEF      +  +EA ++   +R I+       
Sbjct: 191 GDKVLMTMGEIITSCLRSNDTAYRYGGEEFTVVLPETRVEEACLVGERIRGILSQRVFTP 250

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
               +  +TIS G  +    + + + I RAD+A+Y +KK+GR+++ C    E  T
Sbjct: 251 EKEKTAKVTISIGATQFSTSDTLESFIKRADKAMYDSKKAGRDQLTCLPAPETKT 305


>gi|307720558|ref|YP_003891698.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Sulfurimonas autotrophica DSM 16294]
 gi|306978651|gb|ADN08686.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Sulfurimonas autotrophica DSM 16294]
          Length = 423

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 88/181 (48%), Gaps = 17/181 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           +G  + E      ++ +L+  D L+G+ N           I     Y E  S++  DID 
Sbjct: 248 TGRDITERIALEKQLKKLATKDTLTGIYNRYKINTIIEDEIKRAKRYGEIFSLIMLDIDN 307

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV---GRLGGEEFAAAALGSSEQEAAIL 195
           FK++ND +GH  GD V+  +S    VV GT       GR GGEEF   A  +++ EA  L
Sbjct: 308 FKKVNDTYGHDTGDYVLQEIS---RVVLGTIRKTDSFGRWGGEEFILVAPHTNKDEALEL 364

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A  +RK IE             IT+S G+ +    E  +T+I R D ALY AK +GRN+V
Sbjct: 365 AQKIRKNIEKHLFEYVK----QITVSIGVTQYTTNEESTTLIKRVDNALYEAKANGRNQV 420

Query: 256 V 256
            
Sbjct: 421 A 421


>gi|242281165|ref|YP_002993294.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
 gi|242124059|gb|ACS81755.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
          Length = 490

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 10/172 (5%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
           I +N+I   +  D L+ + N  +F   L          N +LS++  D+DYFK +ND +G
Sbjct: 310 IMFNKIKTRANRDGLTRVYNRRSFDERLVEEFKRHQRLNTELSLLMVDLDYFKAVNDTYG 369

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  ++      F +  F+ R GGEEF      + E +A +LA  +R  IE+  
Sbjct: 370 HMAGDMVLEKVARMFEKTFRSTDFIARYGGEEFVILLPHTREDQAEMLAERIRAKIESCA 429

Query: 208 INISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +      S +IT S G++       E  + I+ +AD+ALY AK  GRNRVV 
Sbjct: 430 MTYQD-KSFNITASIGVSSVRPGSLEKDTEIVRKADEALYDAKMQGRNRVVV 480


>gi|46199580|ref|YP_005247.1| diguanylate cyclase/phosphodiesterase [Thermus thermophilus HB27]
 gi|46197206|gb|AAS81620.1| diguanylate cyclase/phosphodiesterase domain 1 (GGDEF) [Thermus
           thermophilus HB27]
          Length = 360

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 80/156 (51%), Gaps = 11/156 (7%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N           +  L  Y   LS+V  D+D FK +ND  GH VGD+V+  L+
Sbjct: 204 DFLTGLRNRRYLELILERELFRLQRYGRPLSLVLLDLDGFKAVNDLHGHEVGDRVLQALA 263

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +L           RLGGEEFA     +   +A  LA  LR+ +E     ++  P   IT
Sbjct: 264 QRLEAHLRRSDRAVRLGGEEFALLLPETPLPQALRLAERLRRAVE----AMAVPPVARIT 319

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+AE    +   T++ RAD+A+Y AK+ G+NRV
Sbjct: 320 ASFGVAEARPTDTPLTLLRRADEAMYRAKRKGKNRV 355


>gi|71909233|ref|YP_286820.1| GGDEF [Dechloromonas aromatica RCB]
 gi|71848854|gb|AAZ48350.1| GGDEF protein [Dechloromonas aromatica RCB]
          Length = 413

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 8/165 (4%)

Query: 107 DCLSGLLNHSAFISSLG---SYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N  +F++ L    S++++    LSI+  D+D+FK+IND +GH  GD+ +    
Sbjct: 224 DPLTGVFNRRSFLTLLDKSISHSDRMASPLSIMLIDLDHFKKINDTWGHKSGDEALRHFV 283

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
              V        +GR+GGEEFA     +   +AA +A  LR  +    +    G SI +T
Sbjct: 284 AVAVPCIRNGDIIGRVGGEEFAILLPDTDISKAATVAERLRCEVAARPVKNEHG-SITLT 342

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +S G+      E     ++RAD A+Y AK  GRN+V    D+ N 
Sbjct: 343 VSIGVTHYRKDEAPEVTLHRADNAMYTAKDKGRNQVEVTPDLNNT 387


>gi|90023579|ref|YP_529406.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89953179|gb|ABD83194.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 588

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 96/181 (53%), Gaps = 13/181 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGL-----LNH---SAFISSLGSYNEKLSIVFFDIDYFKQI 142
           +EL ++  ++ +LS  D L+GL     LNH     F  S   Y  ++SI+  DID FK I
Sbjct: 406 EELELANEKLRELSDTDQLTGLKNRRFLNHYLEDEFARSC-RYGHRMSILLVDIDKFKHI 464

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           NDN+GH VGD  I  ++  L+     P   V R GGEEF      +  + A  +AN L  
Sbjct: 465 NDNYGHTVGDTCIQAIAKVLLESNRQPSDLVARYGGEEFCIVLPETDVEGALHVANRLLD 524

Query: 202 IIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++ N+ I  ++  +I++T S G   A     + I   I  AD ALY AKK+GR++VV + 
Sbjct: 525 MVRNTPI-YAAANTINVTCSIGCYTAVPNSTKQIIAFIDNADTALYEAKKTGRDKVVVYK 583

Query: 260 D 260
           D
Sbjct: 584 D 584


>gi|8118492|gb|AAF73001.1|AF262022_1 hypothetical protein [Vibrio cholerae]
          Length = 205

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 88/155 (56%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D LSGL N  AF     +L    +++S++  DID+FK +NDN+GH  GD++I  ++ +L 
Sbjct: 49  DSLSGLYNRRAFDGDMFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAIAKRLQ 108

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221
            +    +   R GGEEFA  A   S + A   A  +R+ IE   + +  SG S+  IT S
Sbjct: 109 SLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGSITAS 168

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ E+   + + ++I RAD  LY AK  GRNRV+
Sbjct: 169 FGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 203


>gi|292488001|ref|YP_003530878.1| hypothetical protein EAMY_1520 [Erwinia amylovora CFBP1430]
 gi|292899220|ref|YP_003538589.1| signal transduction protein [Erwinia amylovora ATCC 49946]
 gi|291199068|emb|CBJ46179.1| putative signal transduction protein [Erwinia amylovora ATCC 49946]
 gi|291553425|emb|CBA20470.1| Uncharacterized protein yneF [Erwinia amylovora CFBP1430]
 gi|312172125|emb|CBX80382.1| Uncharacterized protein yneF [Erwinia amylovora ATCC BAA-2158]
          Length = 464

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 11/167 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIV----FFDIDYFKQINDNFGHPV 150
           RI++ +  D L+G L  S   + L    G  N +   V      DID FK IND +GH  
Sbjct: 293 RITRRADYDFLTGALTRSGLSAKLDSLVGGRNRQQGFVGAALVIDIDRFKDINDTWGHAA 352

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+A  ++ L         + R+GGEEF     G ++  +++LAN LR+ +EN++I  
Sbjct: 353 GDYVLAKTAECLRDGLSPSTLICRMGGEEFLILIQGITQARSSLLANRLRQSVENNEITF 412

Query: 211 SSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRV 255
            +G  + +T+S GI+     +   +   I RAD+ LY+AK  GRN+V
Sbjct: 413 -NGNDLSVTVSIGISSLNISNVNSLDESIKRADEQLYIAKSCGRNQV 458


>gi|261855860|ref|YP_003263143.1| diguanylate cyclase with PAS/PAC sensor [Halothiobacillus
           neapolitanus c2]
 gi|261836329|gb|ACX96096.1| diguanylate cyclase with PAS/PAC sensor [Halothiobacillus
           neapolitanus c2]
          Length = 423

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 92/173 (53%), Gaps = 16/173 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+G+ N    +  L          N  L +   D+D+FK +ND +GH  GD
Sbjct: 252 LERLATTDELTGIANRRQILQQLDHAYKRFIRLNHSLVVFILDLDFFKNVNDQYGHVSGD 311

Query: 153 ----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
               + IA +  Q+  +     ++GRLGGEEF      +S++ A  +   + +++  +  
Sbjct: 312 ILLKEFIARVQQQIREID----YLGRLGGEEFLLILDETSKETAEQIGQRILQVVRQTPF 367

Query: 209 NISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++ +G S+ IT+S G    CHK+  I+ ++  AD+ALY AK SGRN++  + +
Sbjct: 368 DLGAGVSVTITVSIGATSACHKDAKITELLEHADKALYAAKDSGRNKICWYCE 420


>gi|225619253|ref|YP_002720479.1| GGDEF domain-containing protein [Brachyspira hyodysenteriae WA1]
 gi|225214072|gb|ACN82806.1| GGDEF domain protein [Brachyspira hyodysenteriae WA1]
          Length = 331

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 18/187 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
              ++K+L    + +   S ID L+GL N   F       +     Y   +SI+F D+D+
Sbjct: 145 KDKVIKKLMKEIDTLHAQSTIDPLTGLFNVRYFNKIIEEEVERAKRYKYSISIIFMDLDH 204

Query: 139 FKQINDNFGHPVGD-------KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           FK IND +GH  G+       ++++  S+ + ++  + + + R GGEEF      + +++
Sbjct: 205 FKDINDIYGHDCGNVVLHEIGRLLSNTSENINMLRKSDIAI-RYGGEEFIVICPNTKKEQ 263

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKK 249
           A I+A  +RK +E  + +  S   I++T+S GIAE     K+PI+  I  AD A+Y AK 
Sbjct: 264 AYIVAERIRKTVEKKRFSYES-TIINVTVSVGIAEHKGTSKKPIAETIKNADTAMYEAKH 322

Query: 250 SGRNRVV 256
            GRN+V+
Sbjct: 323 LGRNKVI 329


>gi|218440034|ref|YP_002378363.1| diguanylate cyclase [Cyanothece sp. PCC 7424]
 gi|218172762|gb|ACK71495.1| diguanylate cyclase [Cyanothece sp. PCC 7424]
          Length = 387

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 86/167 (51%), Gaps = 9/167 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y  +  L+  D L+  LN  A        I+      E+ +++  DID FK INDN+GH 
Sbjct: 215 YEDLRTLAIYDFLTETLNRRAMQLEINKEIAYFNRRKEQFALILMDIDRFKSINDNYGHD 274

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+   +  +         +GR GGEEF   + GS+ ++A ILA  LR  IE+ ++ 
Sbjct: 275 CGDLVLQHFTRTIKNNIRKEDALGRWGGEEFLILSRGSNVEDALILAERLRSAIESEKV- 333

Query: 210 ISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255
           I+    I  T+S G+A    H      ++  AD+ALY AK SGRN+V
Sbjct: 334 ITGHTIIKYTLSLGVAVYGIHGTTQEQLVKAADKALYEAKNSGRNQV 380


>gi|146291605|ref|YP_001182029.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
 gi|145563295|gb|ABP74230.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
          Length = 624

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 95/180 (52%), Gaps = 11/180 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQI 142
           L+EL     ++++ S ID L+G+ N SAF   L + +         ++++  DID FK I
Sbjct: 439 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLLAESRISRRQETPIAVLMLDIDKFKSI 498

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD+ +  ++  L      P   V R GGEEFA     ++   A  +A  +R 
Sbjct: 499 NDQFGHLAGDQALKIIAQTLQQNLKRPTDLVSRFGGEEFAIILPNTTADGALQVAETIRD 558

Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +  + +  G  I +T+S G++       +  +T++ +AD+ALY AK SGRN+V  +S
Sbjct: 559 AVTSIGL-MWEGKPIPLTVSIGVSADIVASDQHSTTLLEQADKALYQAKNSGRNQVKLYS 617


>gi|309796753|ref|ZP_07691157.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
 gi|308119635|gb|EFO56897.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
          Length = 472

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 100/190 (52%), Gaps = 10/190 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129
           ++ I  I +S  +  I+ S++K++ +  +    L+++   SGL  + A  S      + L
Sbjct: 277 TMAICPIMVSFSVAAIN-SLMKQVALRAD-FDYLTQVYSRSGL--YEALKSPSLKQTQHL 332

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DIDYFK INDN+GH  GDKV++  +  +  + G    V R+GGEEFA A    + 
Sbjct: 333 TVMLLDIDYFKSINDNYGHECGDKVLSVFALHIQKIVGDKGLVARMGGEEFAVAVPSVNP 392

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQAL 244
            +  ++A  +RK +E          ++++T+S G+       R   +  + ++  AD  L
Sbjct: 393 VDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSIGVGSGRASYRTLTDDFNKLMVEADTCL 451

Query: 245 YVAKKSGRNR 254
           Y +KK GRNR
Sbjct: 452 YRSKKDGRNR 461


>gi|251772817|gb|EES53377.1| diguanylate cyclase [Leptospirillum ferrodiazotrophum]
          Length = 363

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 96/172 (55%), Gaps = 13/172 (7%)

Query: 106 IDCLSGLLNHSAFISSLGS-YNE------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+ +LN   F + +   + E        +++  DID+FK+IND++GH +GDK I  +
Sbjct: 184 VDPLTEILNRRGFSTKINDLFREGKFSGIPCALLMIDIDHFKKINDSYGHIIGDKAIIAV 243

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217
           S  L    G  +F+GR+GGEEFA  +  ++ +E   LA  LR+ I   +I N S+   I 
Sbjct: 244 SKVLRGSVGENVFIGRVGGEEFAVFSPKTTSEEGLALAERLRQNIMKIEITNPSTRQKIS 303

Query: 218 -ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS----DIENN 264
            +T+S GI           +  RAD+ALY +K SGRN+V  ++    DI+N+
Sbjct: 304 TMTVSIGIDLAPFSGEWERMFERADKALYASKSSGRNKVTLWTSKTPDIKNS 355


>gi|254458010|ref|ZP_05071437.1| GGDEF domain protein [Campylobacterales bacterium GD 1]
 gi|207085403|gb|EDZ62688.1| GGDEF domain protein [Campylobacterales bacterium GD 1]
          Length = 648

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 9/165 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            + ++SR D L+G+ N   F       IS    Y+  +S++  DID FK IND +GH +G
Sbjct: 482 ELRKISRTDALTGIWNRRYFFEMLDREISRSQRYDINMSLLMIDIDLFKNINDTWGHDIG 541

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINI 210
           DK I  + + +           RLGGEEF    + +        ++  +RK IE   + I
Sbjct: 542 DKAIKHVVNIINSNVRKENIFSRLGGEEFGIILIETKVPYTPQSISERIRKSIEAVPL-I 600

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               SI IT+S GIA   + +  +T+  R+D+ALY+AK++GRNRV
Sbjct: 601 IDEKSIKITVSIGIANIMNNDTANTLYVRSDRALYLAKENGRNRV 645


>gi|153212185|ref|ZP_01947980.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|153827799|ref|ZP_01980466.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|229514368|ref|ZP_04403829.1| GGDEF family protein [Vibrio cholerae TMA 21]
 gi|254284582|ref|ZP_04959549.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|124116737|gb|EAY35557.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|148876644|gb|EDL74779.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|150425367|gb|EDN17143.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|229348348|gb|EEO13306.1| GGDEF family protein [Vibrio cholerae TMA 21]
          Length = 339

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D LSGL N  AF   + +L    +++S++  DID+FK +NDN+GH  GD++I  ++ +L 
Sbjct: 183 DSLSGLYNRRAFDGDMFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAIAKRLQ 242

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221
            +    +   R GGEEFA  A   S + A   A  +R+ IE   + +  SG S+  IT S
Sbjct: 243 SLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGSITAS 302

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ E+   + + ++I RAD  LY AK  GRNRV+
Sbjct: 303 FGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 337


>gi|15601709|ref|NP_233340.1| GGDEF family protein [Vibrio cholerae O1 biovar eltor str. N16961]
 gi|121586703|ref|ZP_01676487.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121726356|ref|ZP_01679630.1| GGDEF family protein [Vibrio cholerae V52]
 gi|147671516|ref|YP_001215124.1| GGDEF family protein [Vibrio cholerae O395]
 gi|153821045|ref|ZP_01973712.1| GGDEF family protein [Vibrio cholerae B33]
 gi|227812522|ref|YP_002812532.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|229505904|ref|ZP_04395413.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229510242|ref|ZP_04399722.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229517628|ref|ZP_04407073.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229605436|ref|YP_002876140.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|298499730|ref|ZP_07009536.1| GGDEF family protein [Vibrio cholerae MAK 757]
 gi|9658394|gb|AAF96852.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121549131|gb|EAX59166.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121631104|gb|EAX63479.1| GGDEF family protein [Vibrio cholerae V52]
 gi|126521419|gb|EAZ78642.1| GGDEF family protein [Vibrio cholerae B33]
 gi|146313899|gb|ABQ18439.1| GGDEF family protein [Vibrio cholerae O395]
 gi|227011664|gb|ACP07875.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|227015603|gb|ACP11812.1| GGDEF family protein [Vibrio cholerae O395]
 gi|229345664|gb|EEO10637.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229352687|gb|EEO17627.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229356255|gb|EEO21173.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229371922|gb|ACQ62344.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|297541711|gb|EFH77762.1| GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 339

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D LSGL N  AF   + +L    +++S++  DID+FK +NDN+GH  GD++I  ++ +L 
Sbjct: 183 DSLSGLYNRRAFDGDMFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAIAKRLQ 242

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221
            +    +   R GGEEFA  A   S + A   A  +R+ IE   + +  SG S+  IT S
Sbjct: 243 SLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGSITAS 302

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ E+   + + ++I RAD  LY AK  GRNRV+
Sbjct: 303 FGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 337


>gi|120600461|ref|YP_965035.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|120560554|gb|ABM26481.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|319424834|gb|ADV52908.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           putrefaciens 200]
          Length = 624

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 95/180 (52%), Gaps = 11/180 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQI 142
           L+EL     ++++ S ID L+G+ N SAF   L + +         ++++  DID FK I
Sbjct: 439 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLLAESRISRRQETPIAVLMLDIDKFKSI 498

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD+ +  ++  L      P   V R GGEEFA     ++   A  +A  +R 
Sbjct: 499 NDQFGHLAGDQALKIIAQTLQQNLKRPTDLVSRFGGEEFAIILPNTTADGALQVAETIRD 558

Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +  + +  G  I +T+S G++       +  +T++ +AD+ALY AK SGRN+V  +S
Sbjct: 559 AVTSIGL-MWEGKPIPLTVSIGVSADIVASDQHSTTLLEQADKALYQAKNSGRNQVKLYS 617


>gi|146292338|ref|YP_001182762.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
 gi|145564028|gb|ABP74963.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
          Length = 577

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 97/186 (52%), Gaps = 17/186 (9%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDI 136
           + GS+ K  F+      +++R+D L+G+LN  A        F+ +     +   ++ FD+
Sbjct: 382 VVGSLQKRKFM------RMARMDALTGVLNRGAGQELGENLFVQATARGGD-FCVILFDL 434

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND++GH  GD  +  + + L           R+GGEEFA     ++E++   +A
Sbjct: 435 DFFKRINDSYGHGTGDWALKKVVESLKSQIRNGDVFARIGGEEFAILLPYANEEKGMEVA 494

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
              R  IE       SG   +IT S G++     +  +  +++RAD ALY AK +GRN V
Sbjct: 495 EQCRARIEAIDTQ-HSGHHFNITASFGVSGLMADDLSLDPLLHRADMALYAAKSNGRNTV 553

Query: 256 VCFSDI 261
            C+SDI
Sbjct: 554 YCYSDI 559


>gi|332992824|gb|AEF02879.1| diguanylate cyclase [Alteromonas sp. SN2]
          Length = 304

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 88/178 (49%), Gaps = 12/178 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEK---LSIVFFDIDYFKQINDN 145
           L +  + ++ LSR+D L+ LLN  A  +     L   N K   +S +  DID+FK IND 
Sbjct: 124 LELKTDELTLLSRLDPLTNLLNRRAASADIRKLLDQVNRKFVPVSFLLIDIDFFKNINDK 183

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD+VI  LS  L         V R GGEEF      S++ +A +    L + I  
Sbjct: 184 HGHDVGDEVIGLLSKTLKAATRKTDVVARWGGEEFLIVLYNSTQDDARLYCKYLHERI-- 241

Query: 206 SQINISSGPSIHITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +++  S    I ++I      + +R     + T+I  AD ALY AK  GRNR V  +D
Sbjct: 242 AEMRYSRADRITVSIGVTQLPVPQRDTVLQVETLIKEADDALYRAKDEGRNRTVFHTD 299


>gi|222870108|gb|EEF07239.1| predicted protein [Populus trichocarpa]
          Length = 205

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 14/176 (7%)

Query: 98  NRISQLSRI---DCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNF 146
            R SQL  +   D L+G+ N  AF+  L    + L        +++  DID+FKQ+ND +
Sbjct: 24  QRESQLETLALTDALTGIPNRRAFMERLTMELDHLRSGLVAHSTLIMLDIDHFKQVNDGY 83

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIEN 205
           GH VGD V+  L   +         VGRLGGEEF A  L  ++ E  +  A  LR+ +  
Sbjct: 84  GHAVGDIVLKELLASVAQEMRKEDMVGRLGGEEF-AVLLSDTDAEVGLRRAESLRETVAA 142

Query: 206 SQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSD 260
             I+      +HITIS G+ E    +  +   + RAD ALY +K++GRN+   +S+
Sbjct: 143 RAIDAGLAGDLHITISLGVYELQRSDASAQGCLERADAALYYSKRNGRNQSTLWSE 198


>gi|120599667|ref|YP_964241.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|120559760|gb|ABM25687.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|319425640|gb|ADV53714.1| diguanylate cyclase [Shewanella putrefaciens 200]
          Length = 577

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 97/186 (52%), Gaps = 17/186 (9%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDI 136
           + GS+ K  F+      +++R+D L+G+LN  A        F+ +     +   ++ FD+
Sbjct: 382 VVGSLQKRKFM------RMARMDALTGVLNRGAGQELGENLFVQATARGGD-FCVILFDL 434

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND++GH  GD  +  + + L           R+GGEEFA     ++E++   +A
Sbjct: 435 DFFKRINDSYGHGTGDWALKKVVESLKSQIRNGDVFARIGGEEFAILLPYANEEKGMEVA 494

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
              R  IE       SG   +IT S G++     +  +  +++RAD ALY AK +GRN V
Sbjct: 495 EQCRARIEAIDTQ-HSGHHFNITASFGVSGLMADDLSLDPLLHRADMALYAAKSNGRNTV 553

Query: 256 VCFSDI 261
            C+SDI
Sbjct: 554 YCYSDI 559


>gi|226309459|ref|YP_002769421.1| hypothetical protein RER_59740 [Rhodococcus erythropolis PR4]
 gi|226188578|dbj|BAH36682.1| hypothetical membrane protein [Rhodococcus erythropolis PR4]
          Length = 510

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 102/187 (54%), Gaps = 14/187 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSY---NEKLSIVFFDIDYFK 140
           ++L+++  + + +   +  D L+ L N +AF     S++ +Y   N    ++  D+D FK
Sbjct: 328 ALLQQISAAQDELRYRAHHDPLTELANRAAFDEHFASAIENYRLTNSDWVLMLVDLDDFK 387

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND +GHP GD+++  L+ +L        FV R GG+EF     G  + +A ++A   R
Sbjct: 388 QVNDRYGHPAGDRLLVALTARLREAVPESAFVARFGGDEFTVLLQGPID-DAVVVA---R 443

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPIS--TIIYRADQALYVAKKSGRNRVVC 257
           +I++    + ++  S+ +  S G+A+     EP+S   ++ RAD A+Y AK+SG+  VV 
Sbjct: 444 RIVDALSSDQTADTSVSVGASVGVAQFELADEPLSAHALLRRADAAMYEAKRSGKGAVVV 503

Query: 258 FSDIENN 264
           + D   +
Sbjct: 504 YCDRRED 510


>gi|153801380|ref|ZP_01955966.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|229522481|ref|ZP_04411897.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
 gi|229526494|ref|ZP_04415898.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|229528145|ref|ZP_04417536.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|297579995|ref|ZP_06941922.1| GGDEF family protein [Vibrio cholerae RC385]
 gi|124123046|gb|EAY41789.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|229334507|gb|EEN99992.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229336652|gb|EEO01670.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|229340466|gb|EEO05472.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
 gi|297535641|gb|EFH74475.1| GGDEF family protein [Vibrio cholerae RC385]
          Length = 339

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D LSGL N  AF   + +L    +++S++  DID+FK +NDN+GH  GD++I  ++ +L 
Sbjct: 183 DSLSGLYNRRAFDGDMFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAIAKRLQ 242

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221
            +    +   R GGEEFA  A   S + A   A  +R+ IE   + +  SG S+  IT S
Sbjct: 243 SLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGSITAS 302

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ E+   + + ++I RAD  LY AK  GRNRV+
Sbjct: 303 FGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 337


>gi|88797809|ref|ZP_01113397.1| putative sensor protein [Reinekea sp. MED297]
 gi|88779486|gb|EAR10673.1| putative sensor protein [Reinekea sp. MED297]
          Length = 411

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 84/163 (51%), Gaps = 12/163 (7%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+LN  A  + L         +N  L+++F D+D+FKQ+ND++GH VGD+++    
Sbjct: 252 DSLTGVLNRRALTTRLDEEVQRSRRHNHPLTLLFLDLDHFKQVNDHYGHAVGDQILQETC 311

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINISSGPSIH 217
             L         + R GGEEFA     ++ +    LA  L++      S+  I   P   
Sbjct: 312 QALTECIRESDVLARYGGEEFAIILTDTTLEAGHELAERLQECFSTRFSRHAILEKP--- 368

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +T+S G+      + ++ +  RAD ALY AK SGRNR+V   D
Sbjct: 369 LTMSVGLTSLFPTDTLTQLFTRADTALYDAKNSGRNRIVIAQD 411


>gi|293605293|ref|ZP_06687679.1| HAMP domain/GAF domain/GGDEF domain protein [Achromobacter
           piechaudii ATCC 43553]
 gi|292816349|gb|EFF75444.1| HAMP domain/GAF domain/GGDEF domain protein [Achromobacter
           piechaudii ATCC 43553]
          Length = 531

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 86/166 (51%), Gaps = 7/166 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +R++  S  D ++GL+N  A    +  L +     +++  D+D+FKQIND  GHPVGD+V
Sbjct: 354 DRLNAESMTDPMTGLMNRRAMRLRLDELIAARSAFAVIALDVDHFKQINDTHGHPVGDQV 413

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  L+  L           R+GGEEF     G++E  A   A  +R  +  + +    G 
Sbjct: 414 LIALARTLRASVRQQDRPFRVGGEEFVVIVPGATEPVALAAAERIRASVAQTPMPQGVG- 472

Query: 215 SIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259
              +T+S G+A      P    + + ADQALY +K+ GRNRV  ++
Sbjct: 473 --QVTVSVGLALWPGDAPSPQAVVKCADQALYASKQGGRNRVTRWN 516


>gi|254294350|ref|YP_003060373.1| response regulator receiver modulated diguanylate cyclase [Hirschia
           baltica ATCC 49814]
 gi|254042881|gb|ACT59676.1| response regulator receiver modulated diguanylate cyclase [Hirschia
           baltica ATCC 49814]
          Length = 459

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 107/202 (52%), Gaps = 14/202 (6%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRIS-----QLSRIDCLSGLLNHSAFISSLGS 124
            +++  I    LL  +   + K+ +I   R       +L+  D L+GL N     + L  
Sbjct: 253 DILVRPIDPEELLARVKTQVSKKRYIDSLRARLDQSMELAVTDQLTGLHNRRYMENQLEQ 312

Query: 125 YNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
           + ++       +SI+  D+D+FK++ND  GH VGD+V+   SD+L+          R GG
Sbjct: 313 FMKRANMGGGPVSILLCDLDHFKKVNDGHGHDVGDEVLRQFSDRLMHNIRPSDIACRYGG 372

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAER-CHKEPIST 235
           EEF      ++ Q A + A  +R+ ++ +  +I++G   + +T+S G +      + ++ 
Sbjct: 373 EEFMVIMPDTTIQMAQLTAERIREKVDGAPFSINNGLGRLDVTMSGGASVTFPPDDSVAQ 432

Query: 236 IIYRADQALYVAKKSGRNRVVC 257
           +I RAD+ALY AK++GRNR+VC
Sbjct: 433 LIKRADEALYNAKENGRNRIVC 454


>gi|206901960|ref|YP_002250285.1| sensory box/ggdef family protein [Dictyoglomus thermophilum H-6-12]
 gi|206741063|gb|ACI20121.1| sensory box/ggdef family protein [Dictyoglomus thermophilum H-6-12]
          Length = 300

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 8/162 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ +L+ ID L+G+LN           I++     +   ++F DID FK+IND +GH VG
Sbjct: 134 KLRELTYIDELTGVLNRRGLNFFLRKQINNFKKNKKAFGVLFMDIDNFKEINDRYGHNVG 193

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DKV+  LS+ L     T   V R GG+EF              L   ++ +IENS +   
Sbjct: 194 DKVLKMLSETLKNNLRTEDMVARYGGDEFVVILQVGDINTLESLTKRIKNLIENSFLE-E 252

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +G  I IT+S G       + ++T++ RAD+ +Y +KK G+N
Sbjct: 253 AGRIIKITVSVGGTLIRENDTMNTLLKRADELMYQSKKEGKN 294


>gi|158339273|ref|YP_001520450.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158309514|gb|ABW31131.1| diguanylate cyclase (GGDEF domain), putative [Acaryochloris marina
           MBIC11017]
          Length = 394

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 106/205 (51%), Gaps = 11/205 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ 118
           LVEN   + + +   L        I ++LF +  ++S L+  D L+GL N   F      
Sbjct: 189 LVENNKKLELEVQAKLHAQQNLEIINEKLFEANKKLSLLANQDALTGLANRRYFDVYLQQ 248

Query: 119 -ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLG 176
              S       LSI+  DID+FK  ND++GHP GD  +  +S  +  V G +  F  R G
Sbjct: 249 VWESAQENKHPLSILICDIDFFKGYNDSYGHPEGDHCLQRVSQIIHRVAGKSEGFAARFG 308

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIA--ERCHKEPI 233
           GEEFA     ++  ++  +A  LR  I N+++ + +S  S ++T+S G+   +      I
Sbjct: 309 GEEFAMVLPNTNLIDSQTIAGKLRSEIHNARLPHRASTVSEYVTVSIGVTSIQFQSDGSI 368

Query: 234 STIIYRADQALYVAKKSGRNRVVCF 258
           + +I+RADQALY AKK GRN+ V  
Sbjct: 369 NDLIHRADQALYGAKKLGRNQFVTL 393


>gi|323497254|ref|ZP_08102274.1| sensory box/GGDEF family protein-like protein [Vibrio sinaloensis
           DSM 21326]
 gi|323317829|gb|EGA70820.1| sensory box/GGDEF family protein-like protein [Vibrio sinaloensis
           DSM 21326]
          Length = 633

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 65/181 (35%), Positives = 95/181 (52%), Gaps = 26/181 (14%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGH 148
           +R+  LS  D L+ L N   F + + +          +E+ S+   DID+FK++ND FGH
Sbjct: 464 DRLRDLSEKDPLTSLWNRRKFDAEMSAQTLRIKRYPTSEQASLAILDIDHFKRVNDKFGH 523

Query: 149 PVGDKVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GD+VI  ++    VV G  +     + R+GGEEFA     +   EA I+ N LR    
Sbjct: 524 DKGDQVIRAVA----VVLGEHLRETDVIARIGGEEFAIIMPHTPLNEAEIVVNRLR---- 575

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            + I+I S   + ITISAG+ + C  E  S    RAD ALY +K  GRN+V   +  EN+
Sbjct: 576 -TAIHIES--ELGITISAGVTDIC--EDPSASYKRADIALYESKTLGRNQVNILTTSENS 630

Query: 265 T 265
           +
Sbjct: 631 S 631


>gi|298292317|ref|YP_003694256.1| diguanylate cyclase with GAF sensor [Starkeya novella DSM 506]
 gi|296928828|gb|ADH89637.1| diguanylate cyclase with GAF sensor [Starkeya novella DSM 506]
          Length = 340

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 90/181 (49%), Gaps = 11/181 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           EL      +++L+R+D L+GL N   F   L    ++        S++  DID FK +ND
Sbjct: 161 ELNTLNRELTRLTRVDALTGLANRRCFDEELARAGQRCRRTGEAFSVMLIDIDRFKALND 220

Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            FGH  GD+ +  +   L  +       + R GGEEFAA   GS E  A  +A  +R  +
Sbjct: 221 GFGHQAGDEALRRVGAALGGMAARQDDTLARYGGEEFAAILCGSDESGALSVAGRIRSAL 280

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             +Q  I    +  +T+S GI  R   E  +  +I +AD ALY AK+ GR+ VVC  D +
Sbjct: 281 --AQAAIVHPVTGKVTVSIGIVSRPASEIDLDRMIAQADAALYEAKRRGRDLVVCHEDPD 338

Query: 263 N 263
            
Sbjct: 339 G 339


>gi|238895484|ref|YP_002920219.1| hypothetical protein KP1_3555 [Klebsiella pneumoniae NTUH-K2044]
 gi|238547801|dbj|BAH64152.1| hypothetical protein KP1_3555 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 559

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 107/203 (52%), Gaps = 17/203 (8%)

Query: 69  LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------S 120
           L+L+ +  T+ LLL ++    +++ + +    +   +  D L+ LLN  A         S
Sbjct: 357 LTLMWVLFTLMLLLSWLVIRRMVRNMSVLQTSLEWQAWHDALTRLLNRGALFEQAMAVAS 416

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   L+++  D+D+FK IND +GH  GD+V++ ++  L         +GR+GGEEF
Sbjct: 417 DCQRSGRPLAVIQLDLDHFKHINDRYGHQAGDRVLSMVASTLSSAVRQGDLLGRVGGEEF 476

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-----EPIST 235
                 ++ QEAA +A  LR+ I+  ++ + +  ++ ++ S G++    +     E + +
Sbjct: 477 CIVMPNTTLQEAAAVAERLRQRIQGREVFLHNNVTLRVSASLGVSASEERGEYQFEALQS 536

Query: 236 IIYRADQALYVAKKSGRNRVVCF 258
           +   AD  LY+AK++GRN+ VCF
Sbjct: 537 V---ADGRLYLAKQNGRNQ-VCF 555


>gi|167588829|ref|ZP_02381217.1| diguanylate cyclase (GGDEF domain) [Burkholderia ubonensis Bu]
          Length = 511

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 10/176 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           LK   ++ +++ +L+  D L+GL N   F + L    ++       LS++F D+D+FK  
Sbjct: 326 LKRRQVAESKLYRLAHTDALTGLDNRGRFDAVLAQEAQRATRSGRPLSVLFIDVDHFKSF 385

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD V+  ++   +     P   V R GGEEF      +  + AA++A  +R+
Sbjct: 386 NDYYGHQAGDNVLRQVAQCALRCLRRPSDHVARYGGEEFVVTLPDTDARGAAVVAEAIRR 445

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRV 255
            I    +     P   +T+S G A       I  +T++  AD+ALY AK SGRNRV
Sbjct: 446 AIAGLDVEHVMSPYGLVTVSIGTATTTRDRAINAATLLKLADEALYEAKSSGRNRV 501


>gi|197336023|ref|YP_002155793.1| sensory box/ggdef family protein [Vibrio fischeri MJ11]
 gi|197317513|gb|ACH66960.1| sensory box/ggdef family protein [Vibrio fischeri MJ11]
          Length = 631

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 88/174 (50%), Gaps = 17/174 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVF---------FDIDYFKQINDNFGH 148
           N + +LS  D L+   N   F +       K  ++           DIDYFK+IND +GH
Sbjct: 461 NCLRELSEKDMLTQCWNRRKFEAEFSKLTNKQRLMLEVNLSCLAIIDIDYFKRINDQYGH 520

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGDKVI  ++  L     +  FV R+GGEEFA     +S +EA ++ N LR       I
Sbjct: 521 DVGDKVIKNVARILQTESRSIDFVARIGGEEFAILLPNTSLKEAEVILNRLR-----VAI 575

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            ++ G S  +T+S G+ + C  +       RAD ALY +K +GRN++ CF   E
Sbjct: 576 YLADG-SQSVTVSGGVTDIC--DCGEATYKRADLALYESKTAGRNQISCFPSSE 626


>gi|152970968|ref|YP_001336077.1| hypothetical protein KPN_02424 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150955817|gb|ABR77847.1| hypothetical protein KPN_02424 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 559

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 107/203 (52%), Gaps = 17/203 (8%)

Query: 69  LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------S 120
           L+L+ +  T+ LLL ++    +++ + +    +   +  D L+ LLN  A         S
Sbjct: 357 LTLMWVLFTLMLLLSWLVIRRMVRNMSVLQTSLEWQAWHDALTRLLNRGALFEQAMAVAS 416

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   L+++  D+D+FK IND +GH  GD+V++ ++  L         +GR+GGEEF
Sbjct: 417 DCQRSGRPLAVIQLDLDHFKHINDRYGHQAGDRVLSMVASTLSSAVRQGDLLGRVGGEEF 476

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-----EPIST 235
                 ++ QEAA +A  LR+ I+  ++ + +  ++ ++ S G++    +     E + +
Sbjct: 477 CIVMPNTTLQEAAAVAERLRQRIQGREVFLHNNVTLRVSASLGVSASEERGEYQFEALQS 536

Query: 236 IIYRADQALYVAKKSGRNRVVCF 258
           +   AD  LY+AK++GRN+ VCF
Sbjct: 537 V---ADGRLYLAKQNGRNQ-VCF 555


>gi|297566757|ref|YP_003685729.1| diguanylate cyclase [Meiothermus silvanus DSM 9946]
 gi|296851206|gb|ADH64221.1| diguanylate cyclase [Meiothermus silvanus DSM 9946]
          Length = 351

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 99/199 (49%), Gaps = 16/199 (8%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLG---SYN 126
           I+ +     L Y+  +    L +++ R  +L   +  D L+GLLN      +L    +  
Sbjct: 159 IVRLAAMAALLYVFSNAKDRLALAHQRARELHLLAHTDGLTGLLNRLGATRALEDRLAAQ 218

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             +++V  DID+FK IND FGH VGD V+  +  +L         VGR GGEEF    L 
Sbjct: 219 RPIAVVLADIDHFKSINDRFGHAVGDDVLIEVGVRLRDALREGDAVGRWGGEEF-LMILE 277

Query: 187 SSEQEAAILANDLRKIIENSQINISSGP---SIHITISAGIAERCHKEPISTIIYRADQA 243
           S+E   A++      ++E  Q  + S P      +T+S G+A     E  + ++ RAD+A
Sbjct: 278 SAEAGQALV------LVERLQNRMHSRPFPGVGRVTVSLGVAVHQPGESQADLLRRADEA 331

Query: 244 LYVAKKSGRNRVVCFSDIE 262
           LY AK+ GRNR V  +  E
Sbjct: 332 LYAAKRQGRNRAVLSTPRE 350


>gi|241206917|ref|YP_002978013.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860807|gb|ACS58474.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 539

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 89/164 (54%), Gaps = 10/164 (6%)

Query: 104 SRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           ++ D L+GL N        SA ++     +  +S+V FD+D+FK+IND  GH  GD V+ 
Sbjct: 351 AQTDLLTGLYNRRGFEVAASALLTQAEHGSRWISVVLFDLDHFKKINDVHGHDAGDAVLR 410

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++      F +   + R GGEEF A    S+  +AAI+A  +R  IE ++I + SG  +
Sbjct: 411 HVAGVARKNFRSFDLLVRHGGEEFLALLPDSTPDDAAIVAERVRLAIEAAEIPLPSGDVL 470

Query: 217 HITISAGIAERCHK---EPISTIIYRADQALYVAKKSGRNRVVC 257
            +T S G A R ++        ++ RAD ALY AK SGRN VV 
Sbjct: 471 KVTASFGCAGRANEATNRNFEDLVKRADLALYAAKASGRNCVVS 514


>gi|50120026|ref|YP_049193.1| putative signaling protein [Pectobacterium atrosepticum SCRI1043]
 gi|49610552|emb|CAG73997.1| putative signaling protein [Pectobacterium atrosepticum SCRI1043]
          Length = 235

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 4/151 (2%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+ + N  A I  +    E+   +++  DID+FKQ+ND +GHP GD VI  L  ++  
Sbjct: 84  DPLTSVYNRGAIIERINHALERNQAALIVLDIDHFKQVNDTYGHPTGDAVICDLVSRVQH 143

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           V  T   +GR+GGEEF     G +  +A  LA+ L + +  +++ +S  P   +T S G+
Sbjct: 144 VLNTTSSIGRVGGEEFTILLEGHTLMQAVALASQLHQDL--NRMPLSVLPQQRVTASFGV 201

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +    K     +   AD ALY AK+ GRNRV
Sbjct: 202 SWAPQKTSFDALYGAADVALYKAKEKGRNRV 232


>gi|91977925|ref|YP_570584.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91684381|gb|ABE40683.1| diguanylate cyclase with PAS/PAC sensor [Rhodopseudomonas palustris
           BisB5]
          Length = 644

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 89/160 (55%), Gaps = 5/160 (3%)

Query: 99  RISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R++++++ D L+GL N  +   FI+++ + +  L+++  DIDYFK +ND  GH  GD+ +
Sbjct: 458 RLAEMAKTDGLTGLPNRRSLDDFINNVFATHADLAVLMIDIDYFKGLNDCLGHQAGDEGL 517

Query: 156 AFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
             +   L  VV  T     R GGEEFA    GS  + A  LA   R  I +  +   + P
Sbjct: 518 RQIGKLLGDVVANTGGLAARYGGEEFAVILPGSDAKAAMALAETARIKIRDLALANPAAP 577

Query: 215 SIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRN 253
           +  +T+S G+A R    P ++ ++R AD ALY AK+  R+
Sbjct: 578 NQRLTVSIGVASRTSATPDASTLFREADIALYEAKRRSRD 617


>gi|114564388|ref|YP_751902.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114335681|gb|ABI73063.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 359

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 10/166 (6%)

Query: 99  RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +++ +D L+GL N             SL   ++ +S++  D+D+FK+IND +GH VG
Sbjct: 174 RLQKMASLDPLTGLNNRLLLDSIFDMLCESLPEQHQSVSVLILDLDHFKRINDQYGHDVG 233

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DKV+  +S  +  V     +  RLGGEEF      S+ Q+A  +A  LRK +E   + + 
Sbjct: 234 DKVLVEVSRIINSVRRQNDWAFRLGGEEFCMLIPDSNLQQAGQIAERLRKAVE--LVTVI 291

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
            G  ++++IS G++         + IY+ AD  LY AK  GRN+V+
Sbjct: 292 DGSELNLSISIGVSRWPEDGAHFSQIYKTADARLYQAKTLGRNKVI 337


>gi|157963802|ref|YP_001503836.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157848802|gb|ABV89301.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
          Length = 396

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 119/238 (50%), Gaps = 33/238 (13%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           F+I+ AT +  A +   +I L  FY     L + L L I+ +TI L L Y++  +++   
Sbjct: 173 FTIWRATGVDSAIMVTLFIWLFHFY-----LPDELPLSIL-LTI-LALAYLTSILVRSHN 225

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           ++Y         D L+GL +  +  +   S N+   +   DID+FK+ ND +GH VGD+V
Sbjct: 226 LAYR--------DELTGLASRRSLNTLAHSLNKHYCLAMVDIDHFKKFNDTYGHDVGDQV 277

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII----------- 203
           +  ++ +L  V G    V R GGEEF       + +    L  ++R+ I           
Sbjct: 278 LQLVAKKLSKVEGGGK-VFRYGGEEFTIVFTNKNIEAVLPLLEEIRRKISQYNIVLRNQR 336

Query: 204 --ENSQINISSG----PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               S++N   G    P ++ITIS G+AE+  +      + RAD+ALY AK +GRN+V
Sbjct: 337 RKNQSKLNRDEGHKTNPVVNITISIGVAEQHGETSFENTLKRADKALYKAKNNGRNQV 394


>gi|90023067|ref|YP_528894.1| putative diguanylate cyclase (GGDEF) [Saccharophagus degradans
           2-40]
 gi|89952667|gb|ABD82682.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 368

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 115/257 (44%), Gaps = 21/257 (8%)

Query: 14  CHE---KNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           CH      L +++P     Y  + +   ++ + F   +      L    G  +  +E  S
Sbjct: 110 CHAVIASKLVNYTPFAPEAYLGVVWIFVVSGMTFRYALISAITALCILAGSAFYFIEQQS 169

Query: 71  LVIISI---TISLLLGYISGSIL----KELFISYNRISQLSRIDCLSGLLNHSAF----- 118
             ++ +     S   G++   +L    K+ F+S   +  L+  D L+GL N +       
Sbjct: 170 SYVMHVFWLACSFSFGFLGALMLDRSRKQFFVSQQELQHLAVTDPLTGLYNRNQLNIVLN 229

Query: 119 --ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
             ++    YN    ++  D+D+FK IND+FGH  GD V+  +S  L+        V R G
Sbjct: 230 KEMAREQRYNRSFGLLVIDVDFFKSINDSFGHEAGDNVLKQISQDLLQSVRKIDTVIRWG 289

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236
           GEEF   A    +Q    L+ +L K IE S+ N        +T+S G       +  S +
Sbjct: 290 GEEFIVVASEVDKQSIVALSENLCKKIEGSEFNGVG----RVTVSIGATLYKLDDTPSDL 345

Query: 237 IYRADQALYVAKKSGRN 253
           + RAD+ALY AK++GRN
Sbjct: 346 LSRADKALYKAKETGRN 362


>gi|327396404|dbj|BAK13826.1| diguanylate cyclase YddV [Pantoea ananatis AJ13355]
          Length = 365

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 130/280 (46%), Gaps = 38/280 (13%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL------FYIGLTPFYGLEYI 64
           +W  H +    +  H+ +I    F  + +  V FI+ I L      F + +TP      +
Sbjct: 83  LWAWHIQ----YRYHSVLIDDGGFLIVSLLCVFFISAIALSDYLVAFCLHITPSMLTVLM 138

Query: 65  LVENLSLVIISITISL-LLGYISGSILK------------ELFISYNRISQLSRIDCLSG 111
           L     L +I +TI+L L+G+    +++            +L+      S LS +D L+G
Sbjct: 139 LDHGQHLPLILLTIALPLIGFSLQHLMRRRSEDFTLRLMYQLYEEKESFSDLSMLDPLTG 198

Query: 112 LLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           L N     + L        GS+     ++  DID+FK  NDN+GH +GD+ +A +S  + 
Sbjct: 199 LYNRRGLKNRLDNILDNHVGSH----YVLLLDIDHFKAYNDNYGHAMGDQALARVSVAIR 254

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN--ISSGPSIHITIS 221
               +   V R GGEEF       +   A  LA  +R+ + N +I    +   S H+TIS
Sbjct: 255 DAVRSRDVVTRYGGEEFLVLMTNVNASIAMKLAERIRQYVVNLEIPHLFNERVSTHVTIS 314

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           AGIA   +       +  AD+ALYVAK  GRN ++ + D+
Sbjct: 315 AGIAP-IYDNEFDQAVANADRALYVAKNRGRNTILAWEDL 353


>gi|326794582|ref|YP_004312402.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326545346|gb|ADZ90566.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 426

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 120/246 (48%), Gaps = 21/246 (8%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI---ISITISLLLGYI 85
           ++  +  ++ +    FI  +   Y+ L   Y L+    + + +V+   I+ T+ ++L + 
Sbjct: 178 LFLEVRKAVIVTIASFIVTLIGHYLALIQHYPLD----DTVGVVLNIGIAHTVYIVLLWT 233

Query: 86  SGSILKELFISYNRISQLSR---IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFD 135
              +  E   ++ R+S L +   ID L+ +LN                ++ +  +I+  D
Sbjct: 234 VVQMRVEHTKTHERLSTLEQHAMIDQLTNVLNRRGIEDVFKHAEENWINHKQPYAILLID 293

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FKQ+ND +GH VGDKV+A  +  L  +      VGR GGEEF       S +E   L
Sbjct: 294 IDHFKQVNDQYGHLVGDKVLADFAALLNKLTVASNSVGRWGGEEFIILVKSRSNEECFSL 353

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A  +R+ +E S +    G    ++IS G+     ++ +     +AD  LY AKK+GRN+V
Sbjct: 354 AEKVRQTVERSTL----GGLKELSISIGVGYANEEKSLFETFQQADSYLYAAKKTGRNKV 409

Query: 256 VCFSDI 261
           +  + I
Sbjct: 410 IDRNQI 415


>gi|114321799|ref|YP_743482.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228193|gb|ABI57992.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 559

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 90/168 (53%), Gaps = 9/168 (5%)

Query: 104 SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           SR D L+G+ N  A+   L         +   L++VFFD+D+FK IND  GH  GD+ +A
Sbjct: 376 SREDRLTGVPNRRAWEERLDYEFARWQRHRRPLALVFFDVDHFKLINDRLGHAAGDQALA 435

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++ ++        F+ R GGEEF A    ++ +EAA +A+ + + +         G   
Sbjct: 436 QIAGRIHRRLRRSDFLARYGGEEFVALLPETTSEEAAQVADAVLQGLREDGFEY-DGVDY 494

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            +T SAG+A     +  + ++ RADQALY+AK  GR+R VC +  E +
Sbjct: 495 SVTASAGVAGFTADDGPAAVLKRADQALYLAKSGGRDR-VCVAPPEGS 541


>gi|260426532|ref|ZP_05780511.1| response regulator PleD (Stalked cell differentiation-controlling
           protein) [Citreicella sp. SE45]
 gi|260421024|gb|EEX14275.1| response regulator PleD (Stalked cell differentiation-controlling
           protein) [Citreicella sp. SE45]
          Length = 478

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 11/161 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N    +  L    ++        +++  D+D+FK IND  GH VGD V+   +
Sbjct: 293 DPLTGLYNRRYVLPHLTRVADRAIEKARSYALLLLDLDHFKTINDAHGHAVGDAVLVEAA 352

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS--IH 217
            ++         V R+GGEEF      +SE  A + A  LR +I  +   +   P     
Sbjct: 353 RRMSANLRPSDLVARIGGEEFLVVMPDTSENTALLAAERLRSVISKTPFTVPGLPEGGRQ 412

Query: 218 ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +T S G+A   R   EP   ++ RAD+ALYVAK SGRN+V 
Sbjct: 413 VTASIGVALPRRTRAEPPEILLDRADRALYVAKNSGRNQVA 453


>gi|153818336|ref|ZP_01971003.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|126511149|gb|EAZ73743.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
          Length = 319

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 88/155 (56%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D LSGL N  AF     +L    +++S++  DID+FK +NDN+GH  GD++I  ++ +L 
Sbjct: 163 DSLSGLYNRRAFDGDMFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAIAKRLQ 222

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221
            +    +   R GGEEFA  A   S + A   A  +R+ IE   + +  SG S+  IT S
Sbjct: 223 SLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGSITAS 282

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ E+   + + ++I RAD  LY AK  GRNRV+
Sbjct: 283 FGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 317


>gi|86359680|ref|YP_471572.1| putative cellulose biosynthesis transcriptional regulator protein
           [Rhizobium etli CFN 42]
 gi|86283782|gb|ABC92845.1| putative cellulose biosynthesis transcriptional regulator protein
           [Rhizobium etli CFN 42]
          Length = 539

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 90/164 (54%), Gaps = 10/164 (6%)

Query: 104 SRIDCLSGLLNHSAF---ISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           ++ D L+GL N   F    S+L +  E     +S+V FD+D+FK+IND  GH  GD V+ 
Sbjct: 351 AQTDLLTGLYNRRGFDVAASALLTQAEHGSHWISVVLFDLDHFKKINDIHGHDAGDAVLR 410

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++      F +   + R GGEEF A    S+   AAI+A  +R+ IE ++I ++SG  +
Sbjct: 411 HVAGVARQNFRSFDLLVRHGGEEFLALLPDSTPGNAAIVAERVRQAIEAAEIPLASGDLL 470

Query: 217 HITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVC 257
            +T S G A R +         ++ RAD ALY AK SGRN VV 
Sbjct: 471 KVTASFGCAGRANDAANRNFEDLVKRADLALYAAKASGRNCVVS 514


>gi|325289534|ref|YP_004265715.1| diguanylate cyclase [Syntrophobotulus glycolicus DSM 8271]
 gi|324964935|gb|ADY55714.1| diguanylate cyclase [Syntrophobotulus glycolicus DSM 8271]
          Length = 382

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 82/160 (51%), Gaps = 11/160 (6%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +S ID L+ + N       L    E+       +S++  D+D+FK IND +GH  GDKV+
Sbjct: 224 MSNIDDLTNIYNRRKLNEFLELEYERCRAAGKNISLILIDVDFFKAINDTYGHSAGDKVL 283

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
                 L         VGR GGEEF      ++ +EA  LA  +R++++N    + +   
Sbjct: 284 EQFGKLLKQNVSLNNIVGRWGGEEFLMICPETNLEEAVCLAEKIRRMVQNDDFKLEN--- 340

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +T S G+A   + + I+ +I RAD+ LY AK  GRNRV
Sbjct: 341 -QVTCSLGVATNQNIDTITNLIIRADRGLYRAKALGRNRV 379


>gi|304405417|ref|ZP_07387076.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9]
 gi|304345456|gb|EFM11291.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9]
          Length = 549

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 82/155 (52%), Gaps = 8/155 (5%)

Query: 106 IDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +D L+GLLN  A    +S      E  S+V  DID FK +ND  GH VGD+V+  L+D L
Sbjct: 381 VDPLTGLLNRRALEEEMSKRAENEEPFSLVVLDIDRFKCVNDTLGHQVGDEVLKSLADVL 440

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                      R GGEEF     GS  +EA  LA  +R  IE +    ++  +  IT+S 
Sbjct: 441 NHSVRAHDMCCRFGGEEFVILLPGSGVEEAFHLAERIRLTIEKT----ATPANRVITVSL 496

Query: 223 GIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           GIA    H    +T+   AD+ALY AK++GRNR +
Sbjct: 497 GIAAYPQHAADTNTLFKLADEALYAAKEAGRNRTM 531


>gi|289674479|ref|ZP_06495369.1| GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 449

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q + ID L+GL N +A+   L      + E+   L +   D+D+FK+IND +GH  GDKV
Sbjct: 287 QKALIDPLTGLPNRAAWGERLEQEMARWQEEKNSLLVCILDLDHFKRINDGYGHLAGDKV 346

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +++ L        F+ R GGEEF      +S      L ++LR  +E+   +   G 
Sbjct: 347 LKIVANVLSKRLRADDFMARFGGEEFVMLLPATSPAAGLTLLDELRAAVESCPFHF-KGE 405

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT+S G+      E   T I RADQALY AK++GRNR+
Sbjct: 406 RVTITVSIGLTAFRPSEKSDTAIKRADQALYKAKENGRNRI 446


>gi|229522390|ref|ZP_04411806.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
 gi|229340375|gb|EEO05381.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
          Length = 326

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 92/183 (50%), Gaps = 15/183 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLN---------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142
           +++ +Y  I   S  D L+GLLN         H+  I+     N KL I   DID+FK I
Sbjct: 132 KIYRNYTVILHESERDKLTGLLNRRTLEDRLRHTFAINPSTEENHKLWIAMLDIDHFKAI 191

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+FGH +GD+++   + Q+   FG    + R GGEEF       +E +     +  R+ 
Sbjct: 192 NDHFGHMIGDEILLMFAQQMQHYFGPSSQLFRFGGEEFVIIFSSGNEPQIKQHLDGFRQ- 250

Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
               QI   + P I  ++ SAG       + + TI+  AD+ALY AK+ GRN+V C+  +
Sbjct: 251 ----QIRRHNFPRIGELSFSAGFCSLRPGDYLPTILDHADKALYYAKEHGRNQVHCYEQL 306

Query: 262 ENN 264
             N
Sbjct: 307 CEN 309


>gi|209515923|ref|ZP_03264784.1| diguanylate cyclase [Burkholderia sp. H160]
 gi|209503581|gb|EEA03576.1| diguanylate cyclase [Burkholderia sp. H160]
          Length = 241

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/151 (40%), Positives = 76/151 (50%), Gaps = 4/151 (2%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+G+LN SA I          S V    DID FK+IND++GHP GD VI  + D L  
Sbjct: 88  DALTGVLNRSAVIERTTKVLRTNSAVMIILDIDEFKRINDDYGHPTGDAVILGVVDCLRR 147

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           + G   F+GR+GGEEF     G      A+LA  +R+ I  S +       I  +  A I
Sbjct: 148 IVGEQGFIGRVGGEEFTVLLPGHDPASGALLAERMREAISESLVVAPVDRRITASFGASI 207

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            E        T    AD ALY AK+SGRNRV
Sbjct: 208 NE--IGTGFDTAYGLADAALYRAKRSGRNRV 236


>gi|119485195|ref|ZP_01619580.1| GGDEF domain protein [Lyngbya sp. PCC 8106]
 gi|119457423|gb|EAW38548.1| GGDEF domain protein [Lyngbya sp. PCC 8106]
          Length = 514

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 109/227 (48%), Gaps = 17/227 (7%)

Query: 39  IATVIF--IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY---ISGSILKEL 93
           IAT+ +     IF ++I ++   G +Y+L     ++ +S+ I  LL Y   I     K+L
Sbjct: 287 IATISYEDRQKIFYYWISVSYDKGFDYVLF--WEIMAVSLVILSLLFYRNLIISRYNKKL 344

Query: 94  FISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNF 146
             +  ++  L + D L+GL N           +     YN   S+V  D+D+FKQIND +
Sbjct: 345 IEANKKLDCLYKTDKLTGLFNRHIIDEETEKEVLRANRYNLGFSVVLLDVDHFKQINDTY 404

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD V+  ++  L         VGR GGEEF      +    AA LA  LR  IE  
Sbjct: 405 GHHVGDSVLVEIAFILKNNLRKTDVVGRWGGEEFIVICPETQLTNAAHLAEKLRSQIECH 464

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           Q    SG    IT S G++     + + ++I R D  LY +K++ RN
Sbjct: 465 QF---SGVEKTITASFGVSAYRVDDTVESLIKRVDSTLYFSKRNNRN 508


>gi|262191934|ref|ZP_06050101.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
 gi|262032168|gb|EEY50739.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
          Length = 338

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D LSGL N  AF   + +L    +++S++  DID+FK +NDN+GH  GD++I  ++ +L 
Sbjct: 182 DSLSGLYNRRAFDGDMFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAIAKRLQ 241

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221
            +    +   R GGEEFA  A   S + A   A  +R+ IE   + +  SG S+  IT S
Sbjct: 242 SLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGSITAS 301

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ E+   + + ++I RAD  LY AK  GRNRV+
Sbjct: 302 FGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 336


>gi|153824663|ref|ZP_01977330.1| ggdef family protein [Vibrio cholerae MZO-2]
 gi|149741619|gb|EDM55648.1| ggdef family protein [Vibrio cholerae MZO-2]
          Length = 338

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D LSGL N  AF   + +L    +++S++  DID+FK +NDN+GH  GD++I  ++ +L 
Sbjct: 182 DSLSGLYNRRAFDGDMFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAIAKRLQ 241

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221
            +    +   R GGEEFA  A   S + A   A  +R+ IE   + +  SG S+  IT S
Sbjct: 242 SLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGSITAS 301

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ E+   + + ++I RAD  LY AK  GRNRV+
Sbjct: 302 FGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 336


>gi|255746666|ref|ZP_05420613.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio cholera CIRS 101]
 gi|262166966|ref|ZP_06034685.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio cholerae RC27]
 gi|255736420|gb|EET91818.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio cholera CIRS 101]
 gi|262024607|gb|EEY43289.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio cholerae RC27]
          Length = 461

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
           ++L  +  ++S L++ D L+ + N  +F   L +   +   L+++ FDID FK IND FG
Sbjct: 289 QQLEEANQKLSYLAKTDSLTDIANRRSFFEHLEAEQTRSGSLTLMVFDIDDFKTINDRFG 348

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD  I F+   +     +  +  R+GGEEFA  A G + +E+  LA  + + +   +
Sbjct: 349 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 408

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             +++  S+ +TIS G A   H   P S  ++ AD  +Y  K++G+N+VV
Sbjct: 409 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 456


>gi|15601316|ref|NP_232947.1| GGDEF family protein [Vibrio cholerae O1 biovar eltor str. N16961]
 gi|147671644|ref|YP_001215330.1| GGDEF family protein [Vibrio cholerae O395]
 gi|153819246|ref|ZP_01971913.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|153822850|ref|ZP_01975517.1| GGDEF family protein [Vibrio cholerae B33]
 gi|227812125|ref|YP_002812135.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|229506273|ref|ZP_04395782.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae BX 330286]
 gi|229509607|ref|ZP_04399089.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae B33]
 gi|229516570|ref|ZP_04406017.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae RC9]
 gi|229605823|ref|YP_002876527.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae MJ-1236]
 gi|298499353|ref|ZP_07009159.1| GGDEF family protein [Vibrio cholerae MAK 757]
 gi|9657965|gb|AAF96459.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|126510195|gb|EAZ72789.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|126519627|gb|EAZ76850.1| GGDEF family protein [Vibrio cholerae B33]
 gi|146314027|gb|ABQ18567.1| GGDEF family protein [Vibrio cholerae O395]
 gi|227011267|gb|ACP07478.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|227015393|gb|ACP11602.1| GGDEF family protein [Vibrio cholerae O395]
 gi|229346451|gb|EEO11422.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae RC9]
 gi|229353557|gb|EEO18495.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae B33]
 gi|229356624|gb|EEO21542.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae BX 330286]
 gi|229372309|gb|ACQ62731.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae MJ-1236]
 gi|297541334|gb|EFH77385.1| GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 469

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
           ++L  +  ++S L++ D L+ + N  +F   L +   +   L+++ FDID FK IND FG
Sbjct: 297 QQLEEANQKLSYLAKTDSLTDIANRRSFFEHLEAEQTRSGSLTLMVFDIDDFKTINDRFG 356

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD  I F+   +     +  +  R+GGEEFA  A G + +E+  LA  + + +   +
Sbjct: 357 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 416

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             +++  S+ +TIS G A   H   P S  ++ AD  +Y  K++G+N+VV
Sbjct: 417 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 464


>gi|153821080|ref|ZP_01973747.1| ggdef family protein [Vibrio cholerae B33]
 gi|254850122|ref|ZP_05239472.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255746303|ref|ZP_05420250.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262158184|ref|ZP_06029302.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|262169217|ref|ZP_06036910.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|126521454|gb|EAZ78677.1| ggdef family protein [Vibrio cholerae B33]
 gi|254845827|gb|EET24241.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255736057|gb|EET91455.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262022498|gb|EEY41206.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|262030062|gb|EEY48708.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|327485931|gb|AEA80337.1| GGDEF family protein [Vibrio cholerae LMA3894-4]
          Length = 338

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D LSGL N  AF   + +L    +++S++  DID+FK +NDN+GH  GD++I  ++ +L 
Sbjct: 182 DSLSGLYNRRAFDGDMFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAIAKRLQ 241

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221
            +    +   R GGEEFA  A   S + A   A  +R+ IE   + +  SG S+  IT S
Sbjct: 242 SLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGSITAS 301

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ E+   + + ++I RAD  LY AK  GRNRV+
Sbjct: 302 FGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 336


>gi|313632650|gb|EFR99631.1| ggdef domain-containing protein [Listeria seeligeri FSL N1-067]
 gi|313637209|gb|EFS02726.1| ggdef domain-containing protein [Listeria seeligeri FSL S4-171]
          Length = 367

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 90/167 (53%), Gaps = 11/167 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
            + Q + +D L+GL N   F     S           L+++  DIDYFK++ND +GH VG
Sbjct: 193 ELQQSTILDPLTGLSNFRHFEQMFDSAFQYAAMKKANLNLIIIDIDYFKRVNDTYGHLVG 252

Query: 152 DKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           + V++  S  L+ + F     + R+GGEEFA      S  E   LA  +RK +E  +  I
Sbjct: 253 NSVLSTFSQMLLKISFPPNTVIARIGGEEFAIILPNISASETEHLAEKIRKKVEKIEFPI 312

Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
            +  S+ ITISAGIA       ++   ++  ADQALY AK++GRN+V
Sbjct: 313 VATGSV-ITISAGIANYNGSNYLTPEALLQAADQALYNAKRNGRNQV 358


>gi|126667151|ref|ZP_01738125.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter sp. ELB17]
 gi|126628307|gb|EAZ98930.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter sp. ELB17]
          Length = 319

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 111/236 (47%), Gaps = 35/236 (14%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN---------- 98
            L +    P  G E  + +NL       TIS L G  SG + K   + Y+          
Sbjct: 94  LLRFRNTRPITGTEEFMYQNL-------TISPLCG-PSGKVEKVCLMIYDVTDIASSKRA 145

Query: 99  ------RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDN 145
                 ++++LS ID L+GL N  ++ + L +       Y    ++V FDID+FK IND+
Sbjct: 146 LERANDQLAKLSMIDKLTGLFNRGSWENLLDAEFSRHRRYGGNSTLVMFDIDHFKAINDS 205

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH VGDKVI   +             GR GGEEFA     +    A  +   +   I  
Sbjct: 206 FGHLVGDKVIRHTAATTRRHLRHSDSAGRYGGEEFAIILPETDTAGALTICERILSAISR 265

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRVVCFS 259
             + ++S  +I  T+S GIA      P + + +  +ADQA+Y AK+ GRN++V FS
Sbjct: 266 ETVTVNSH-NISYTVSMGIAP-LSDSPKNYLAWLEQADQAMYSAKQGGRNQIVTFS 319


>gi|170721106|ref|YP_001748794.1| diguanylate cyclase [Pseudomonas putida W619]
 gi|169759109|gb|ACA72425.1| diguanylate cyclase [Pseudomonas putida W619]
          Length = 527

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 92/174 (52%), Gaps = 14/174 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIND 144
           ++L+E     NR +Q    D L+GL N  +    +S L +     S++  DID+FK+IND
Sbjct: 355 NLLQERIGRLNRDAQ---TDPLTGLGNRRSLEFKLSLLEAEGRAFSVIVLDIDHFKRIND 411

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD+V+  L+  +         + R GGEEF     G+SE  A  +A  LR +++
Sbjct: 412 GHGHDVGDQVLQRLAAIMRGCCREGDLLCRTGGEEFLMLLPGASEAVATAVAQRLRVMVQ 471

Query: 205 NSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++ I     P   +TIS G+A       +EP    + +AD ALY AK+ GRNRV
Sbjct: 472 DTAIE----PVGAVTISLGVAHWQAEQEREP-GAALSQADSALYRAKREGRNRV 520


>gi|121726491|ref|ZP_01679755.1| GGDEF family protein [Vibrio cholerae V52]
 gi|153825419|ref|ZP_01978086.1| ggdef family protein [Vibrio cholerae MZO-2]
 gi|254224806|ref|ZP_04918422.1| GGDEF family protein [Vibrio cholerae V51]
 gi|121631086|gb|EAX63463.1| GGDEF family protein [Vibrio cholerae V52]
 gi|125622869|gb|EAZ51187.1| GGDEF family protein [Vibrio cholerae V51]
 gi|149740965|gb|EDM55042.1| ggdef family protein [Vibrio cholerae MZO-2]
          Length = 326

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 92/183 (50%), Gaps = 15/183 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLN---------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142
           +++ +Y  I   S  D L+GLLN         H+  I+     N KL I   DID+FK I
Sbjct: 132 KIYRNYTVILHESERDKLTGLLNRRTLEDRLRHTFAINPSTEENHKLWIAMLDIDHFKAI 191

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+FGH +GD+++   + Q+   FG    + R GGEEF       +E +     +  R+ 
Sbjct: 192 NDHFGHMIGDEILLMFAQQMQHYFGPSSQLFRFGGEEFVIIFSSGNEPQIKQQLDGFRQ- 250

Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
               QI   + P I  ++ SAG       + + TI+  AD+ALY AK+ GRN+V C+  +
Sbjct: 251 ----QIRRHNFPRIGELSFSAGFCSLRPGDYLPTILDHADKALYYAKEHGRNQVHCYEQL 306

Query: 262 ENN 264
             N
Sbjct: 307 CEN 309


>gi|255525464|ref|ZP_05392401.1| response regulator receiver modulated diguanylate cyclase
           [Clostridium carboxidivorans P7]
 gi|255510829|gb|EET87132.1| response regulator receiver modulated diguanylate cyclase
           [Clostridium carboxidivorans P7]
          Length = 307

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 87/169 (51%), Gaps = 16/169 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
           ++  ++  D L+GL NH+  I  L     K       +S    DID+FK+IND +GH  G
Sbjct: 140 KLKAMAIKDGLTGLYNHTFLIEILEKEIRKHEKKSSSISFAMIDIDHFKKINDVYGHLFG 199

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DKV+  LSD L          GR GGEEF      S ++    L   LRK +++++  I 
Sbjct: 200 DKVLKGLSDILSESVANFGIAGRYGGEEFGIIFTNSDKEGLCNLCEKLRKNVQDNEFQIG 259

Query: 212 SGPSIHITISAGIAERCHKEPI-----STIIYRADQALYVAKKSGRNRV 255
           +   + ITIS G    C KE +       II +AD+ALY AK SGRN+V
Sbjct: 260 N-DKVKITISIGA---CFKEDVKDLKSDEIIRQADEALYKAKSSGRNKV 304


>gi|152998962|ref|YP_001364643.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|151363580|gb|ABS06580.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           baltica OS185]
          Length = 628

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 13/184 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL     ++++ S ID L+G+ N SAF   L             ++++  DID FK I
Sbjct: 441 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLIAESRISRRQETPIALLMLDIDRFKLI 500

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD+ +  ++  L      P   V R GGEEFA     ++E  A  +A  +R 
Sbjct: 501 NDRFGHLAGDEALRTIAQTLQQHLKRPTDLVSRYGGEEFAIILPNTAEDGALQVAETIRD 560

Query: 202 IIENSQINIS-SGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +  + IN    G +I +TIS G++     + +  + ++ +AD+ALY AK  GRN+V  F
Sbjct: 561 AV--ASINFEWEGVAIPLTISIGVSADIVTNDQHSTKLLEQADKALYQAKNGGRNQVSLF 618

Query: 259 SDIE 262
           S ++
Sbjct: 619 SSVQ 622


>gi|144898295|emb|CAM75159.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 668

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 82/168 (48%), Gaps = 10/168 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ Q +  D L+GL N + F       +       + L++V  D+D+FKQIND FGHP 
Sbjct: 498 ERLEQTALHDPLTGLANRTKFRQRFEEEVDRQRRSGKTLTLVAMDLDHFKQINDRFGHPA 557

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+   +  L         V R GGEEF      +    A  LA  LR  +E   + +
Sbjct: 558 GDMVLRETAKTLRAQVRQTDLVARFGGEEFLILLPETELIGARHLAESLRLAVEAQDLCL 617

Query: 211 -SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
             SG  +HIT + GIAE     P+S   ++  AD+A Y  K  GRNRV
Sbjct: 618 PESGEKLHITGTFGIAESTADAPLSQDALVEAADRAAYRGKNEGRNRV 665


>gi|219847766|ref|YP_002462199.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus aggregans DSM 9485]
 gi|219542025|gb|ACL23763.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus aggregans DSM 9485]
          Length = 715

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 83/160 (51%), Gaps = 12/160 (7%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLNH A    L          N+ L+I   D+D+FK+IND++GH VGD+V+   +
Sbjct: 422 DSLTGLLNHQAVEEELAREFARAERLNQPLAIAIIDLDHFKRINDSYGHVVGDQVLRSFA 481

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS--IH 217
             L         +GR GGEEF  A   +S  EA  L + +R      +     GP+    
Sbjct: 482 RLLQQRLRKSDLIGRHGGEEFLIALPNTSLVEARTLIDTVRSSFAALR---HYGPAGMFS 538

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +T+SAGIA          ++  ADQALY AK+ GRNRVV 
Sbjct: 539 VTLSAGIAGYPQHRSQIGMMQAADQALYQAKREGRNRVVV 578


>gi|89094043|ref|ZP_01166987.1| PAS:GGDEF protein [Oceanospirillum sp. MED92]
 gi|89081717|gb|EAR60945.1| PAS:GGDEF protein [Oceanospirillum sp. MED92]
          Length = 334

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 7/163 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +LS  D L+GL N   F + L         Y+   ++ FFD+D FK++NDN GH  GDK
Sbjct: 170 KELSITDSLTGLHNSRHFYNQLEDALETARRYHHPFTLCFFDLDDFKKLNDNHGHLTGDK 229

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+      +     T     R GGEEFA     +  + A+++A  +R+ ++N Q  +  G
Sbjct: 230 VLETFGTLVRSSLRTLDSGYRYGGEEFAILLPSTDVEGASVVAERVRESLQNYQFVLEGG 289

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +  ++S GI    + + +  +++RAD ALY AK+ G+N VV
Sbjct: 290 EKLQASVSIGITSFKNGDNVQALMHRADSALYEAKRKGKNCVV 332


>gi|262375972|ref|ZP_06069203.1| predicted protein [Acinetobacter lwoffii SH145]
 gi|262309066|gb|EEY90198.1| predicted protein [Acinetobacter lwoffii SH145]
          Length = 465

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 80/156 (51%), Gaps = 7/156 (4%)

Query: 107 DCLSGLLNH---SAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ LLN    +  IS   +++ K    LS++  D DYFK IND FGH  GD  + FL+
Sbjct: 294 DSLTQLLNRRYLNTIISREITFSRKNHTPLSLLAIDADYFKSINDKFGHAAGDLALKFLA 353

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L        +  R+GGEEF    + + E+ A  +A  +RK IEN  IN + G     T
Sbjct: 354 EALQKYSQGSDYAFRVGGEEFLLLLVDTDEKRALNIAESIRKYIENGMINSAQGQQFKFT 413

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S G             +  AD ALY+AK +GRNRV
Sbjct: 414 VSIGCVLYDGHPDYQRFLNAADSALYMAKNNGRNRV 449


>gi|149180040|ref|ZP_01858545.1| YhcK [Bacillus sp. SG-1]
 gi|148852232|gb|EDL66377.1| YhcK [Bacillus sp. SG-1]
          Length = 327

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/196 (37%), Positives = 109/196 (55%), Gaps = 16/196 (8%)

Query: 78  ISLLLGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNE 127
           IS   G+IS  I++ L  S   ++R    S  D L+GL N   F       + ++ + NE
Sbjct: 126 ISYSAGFISFYIVEYLRRSQALFDRYKSESATDGLTGLNNVRKFDEIFNDLLRTIPNNNE 185

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           KLS+++ DID+FK++ND +GH  GD ++  L   L     +   V R GGEEF    L  
Sbjct: 186 KLSLLYLDIDFFKKVNDTYGHQNGDIILKDLGKILQESVRSFDIVSRNGGEEFTVILLDC 245

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQAL 244
               A  ++  +RK +E+ +  ++ G  IHITIS GIA  C  +    ++++I  AD AL
Sbjct: 246 PVDRAKEISEKIRKAVEDHEFTLTDGQIIHITISIGIA--CFNDTTDDVTSLIEDADSAL 303

Query: 245 YVAKKSGRNRVVCFSD 260
           Y+AKK+GRNR VC S+
Sbjct: 304 YMAKKTGRNR-VCVSE 318


>gi|24374995|ref|NP_719038.1| GGDEF domain-containing protein [Shewanella oneidensis MR-1]
 gi|24349727|gb|AAN56482.1|AE015785_5 GGDEF domain protein [Shewanella oneidensis MR-1]
          Length = 312

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 104 SRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S+ D L+GL N        +A ++        L +V  DID+FK INDNFGH  GD V+ 
Sbjct: 152 SKTDLLTGLANRRQIEDVLAAAMAKSDRTQSSLCVVMCDIDFFKNINDNFGHLCGDDVLK 211

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++ QL         + R GGEEF         + A +L   LR +I  +    S G  +
Sbjct: 212 IVASQLQHSAQAATCIARWGGEEFLIVLEHVVPESAGVLCEQLRGLIAATDYQ-SYGQHM 270

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +T+S G  +    E + +++ R D+ALY AK  GRN+VV
Sbjct: 271 QLTMSFGCVQYQANESLQSLLCRVDKALYQAKNGGRNQVV 310


>gi|329905918|ref|ZP_08274296.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327547409|gb|EGF32235.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 1004

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 93/171 (54%), Gaps = 21/171 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPV 150
           +R+ QL+++D L+GLLN + F   L      + NE+  ++++F DID+FK IND  GHPV
Sbjct: 830 SRLLQLAQVDSLTGLLNRAGFEQKLAQALSTARNERSLMALLFLDIDHFKSINDTHGHPV 889

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-----SSEQEAAILANDLRKIIEN 205
           GD ++   S +L     +   + RLGG+EF     G      +E+ A  + + +R + + 
Sbjct: 890 GDALLRAFSGRLSRALRSVDTIARLGGDEFTVIMEGITHTDDAEKTAGKIVDSMRALFK- 948

Query: 206 SQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNR 254
                  G  + IT S G+A  C  +P++   +I +AD  LY AK  GRN+
Sbjct: 949 -----LEGLPLSITASIGVA-FCDGKPMAAKELIRQADDMLYQAKAGGRNQ 993


>gi|327478666|gb|AEA81976.1| two-component response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 546

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 77/156 (49%), Gaps = 7/156 (4%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLL H+     L           +  S+V  D+D+FKQ+ND +GH  GD VI  L+
Sbjct: 386 DSLTGLLKHADIKEQLALEVQRSSRSGKPASVVMLDLDHFKQVNDTYGHAAGDNVIRALA 445

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L         +GR GGEEF A     S  +A  + +++R        N        +T
Sbjct: 446 NLLRQRLRRIDSLGRYGGEEFVAVLPECSALQARRIFDEIRVRFAALTFNAGDHQEFRVT 505

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            SAGI E       S ++ RADQALY+AK  GRN+V
Sbjct: 506 FSAGICETDEHSAASVLLERADQALYLAKHQGRNQV 541


>gi|302185635|ref|ZP_07262308.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 796

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/184 (34%), Positives = 92/184 (50%), Gaps = 18/184 (9%)

Query: 87  GSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
           GS+L   F+S      R+ Q    LS  D L+G  N   F       +  +  +   LSI
Sbjct: 611 GSVLWHGFVSDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSI 670

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK+IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +
Sbjct: 671 IMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRGAQ 730

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A  LA  LR+ +    I    G    +T S GIA     E I  ++ RAD  +Y AK++G
Sbjct: 731 AYQLALSLREELRKQVIE---GVDQVVTGSFGIASWREGEGIDAMLLRADSGVYAAKQAG 787

Query: 252 RNRV 255
           R+RV
Sbjct: 788 RDRV 791


>gi|221197620|ref|ZP_03570667.1| diguanylate cyclase [Burkholderia multivorans CGD2M]
 gi|221204293|ref|ZP_03577311.1| diguanylate cyclase [Burkholderia multivorans CGD2]
 gi|221176459|gb|EEE08888.1| diguanylate cyclase [Burkholderia multivorans CGD2]
 gi|221184174|gb|EEE16574.1| diguanylate cyclase [Burkholderia multivorans CGD2M]
          Length = 312

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 96/181 (53%), Gaps = 13/181 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           + +E   +  ++ + +  D L+G+ N   F + LG        Y   LS++ FD+D+FK 
Sbjct: 135 MQREREEAVAKLREHANRDGLTGIANRRYFETRLGEEFARWQRYGGDLSMLLFDLDHFKA 194

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH VGD V+   + ++  +       GR GGEEFA     ++  EA  +A+ +R 
Sbjct: 195 INDRFGHAVGDAVLRETARRVAAIVRAQDTFGRFGGEEFALLLPCTNLDEALQVADKVRD 254

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK--EP-ISTIIYRADQALYVAKKSGRNRVVCF 258
            I  + ++ + G S+ +T S G A  C K  +P    ++  AD ALY AK+ GR+R V +
Sbjct: 255 AIGRTTVD-AEGVSVAVTASVGAA--CAKLGQPACDALVNDADAALYRAKRLGRDRSVGY 311

Query: 259 S 259
           +
Sbjct: 312 A 312


>gi|108759945|ref|YP_632208.1| FHA domain/GGDEF domain-containing protein [Myxococcus xanthus DK
           1622]
 gi|108463825|gb|ABF89010.1| FHA domain/GGDEF domain protein [Myxococcus xanthus DK 1622]
          Length = 291

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 102/204 (50%), Gaps = 24/204 (11%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------- 118
           + N  LV I  TI     YI+G  ++  +  ++ I +L+ +D L+ + N   F       
Sbjct: 98  LRNGDLVKIGRTI---FKYIAGGNIEAAY--HDEIYRLTTMDGLTQIYNRRYFDEQLDRE 152

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           IS    Y   LS+V  DID+FK +ND +GH  GD V+  L+  +           R GGE
Sbjct: 153 ISRSRRYERMLSLVLLDIDHFKAVNDKYGHLAGDSVLKQLASTVRTKIRREDVFARYGGE 212

Query: 179 EFA----AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEP 232
           EFA      +L  + Q    LA  +R+++E  +        I +T+S G+A  E  H+EP
Sbjct: 213 EFAILLPEVSLSGTRQ----LAEKVRRLVEKQRFEFDR-QVIPVTVSVGLAVLEPHHREP 267

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
              ++  AD+ L+ AK SGRNRVV
Sbjct: 268 -GELVRDADEKLFDAKTSGRNRVV 290


>gi|296188601|ref|ZP_06856989.1| diguanylate cyclase (GGDEF) domain protein [Clostridium
           carboxidivorans P7]
 gi|296046865|gb|EFG86311.1| diguanylate cyclase (GGDEF) domain protein [Clostridium
           carboxidivorans P7]
          Length = 296

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 87/169 (51%), Gaps = 16/169 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
           ++  ++  D L+GL NH+  I  L     K       +S    DID+FK+IND +GH  G
Sbjct: 129 KLKAMAIKDGLTGLYNHTFLIEILEKEIRKHEKKSSSISFAMIDIDHFKKINDVYGHLFG 188

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DKV+  LSD L          GR GGEEF      S ++    L   LRK +++++  I 
Sbjct: 189 DKVLKGLSDILSESVANFGIAGRYGGEEFGIIFTNSDKEGLCNLCEKLRKNVQDNEFQIG 248

Query: 212 SGPSIHITISAGIAERCHKEPI-----STIIYRADQALYVAKKSGRNRV 255
           +   + ITIS G    C KE +       II +AD+ALY AK SGRN+V
Sbjct: 249 N-DKVKITISIGA---CFKEDVKDLKSDEIIRQADEALYKAKSSGRNKV 293


>gi|229124919|ref|ZP_04254095.1| GGDEF domain protein [Bacillus cereus 95/8201]
 gi|228658549|gb|EEL14213.1| GGDEF domain protein [Bacillus cereus 95/8201]
          Length = 351

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 24/233 (10%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91
           S+F   + F  N++  +I   P      +L +++S+V + +  S +  YI+      +L+
Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQ 179

Query: 92  --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
             ELF    ++ Q + ID L+GL N   F       I +    N  L ++  DID+FK +
Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSV 236

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GHP GD+V+  +   L  V   P    R GGEEFA             +   +R  
Sbjct: 237 NDTYGHPAGDEVLKRIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAA 296

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E     +  G  I IT+S GI+   +++     I  AD ALY +K++GRN+V
Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPERFIQAADDALYYSKRNGRNQV 347


>gi|254427231|ref|ZP_05040938.1| GGDEF domain protein [Alcanivorax sp. DG881]
 gi|196193400|gb|EDX88359.1| GGDEF domain protein [Alcanivorax sp. DG881]
          Length = 409

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 127/263 (48%), Gaps = 46/263 (17%)

Query: 34  FFSIFIATVIFIA-NIFLFYI--GLTPFYGLEYILVENLSLVIISI---TISLLLGYISG 87
           F+S  +++VI I   IF   +  G  PF        E  +LV++S+   ++SL   Y+  
Sbjct: 149 FYSALVSSVIMIGCMIFSLQLSSGRHPF--------EPSTLVLVSLAFASMSLFGQYVYE 200

Query: 88  SILKELFISYNRISQ--------------LSRIDCLSGLLNHSAFISSLG---------- 123
            +L++ F+S + + Q               + +D ++G +N     S L           
Sbjct: 201 RLLRQHFLSEHVLFQHRNELHSANLVLENQATVDGMTGCINRRGMESRLSHLYHKLNQNN 260

Query: 124 -SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD-QLVVVFGTPMFVGRLGGEEFA 181
               E+++++ FDID+FKQ ND +GHP GD+ +  ++   L +V     FV R GGEEF 
Sbjct: 261 PDAPERITLMLFDIDFFKQYNDTYGHPAGDECLKKVAGVPLGMVQSDTDFVARYGGEEFV 320

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEPI---STII 237
                SS  +A + A  +R  +E   +  S S  S  +TIS G+A  C        + ++
Sbjct: 321 ITLTDSSFNDALVFAERMRNRVEQLGLPHSGSRVSQVVTISVGVA--CSDGTAADGAQLL 378

Query: 238 YRADQALYVAKKSGRNRVVCFSD 260
             AD+ALY AK +GRNRV   S+
Sbjct: 379 KMADEALYQAKGAGRNRVAMMSN 401


>gi|153214347|ref|ZP_01949348.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|153829495|ref|ZP_01982162.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|229514275|ref|ZP_04403736.1| GGDEF family protein [Vibrio cholerae TMA 21]
 gi|124115404|gb|EAY34224.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|148875014|gb|EDL73149.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|229348255|gb|EEO13213.1| GGDEF family protein [Vibrio cholerae TMA 21]
          Length = 326

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 92/183 (50%), Gaps = 15/183 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLN---------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142
           +++ +Y  I   S  D L+GLLN         H+  I+     N KL I   DID+FK I
Sbjct: 132 KIYRNYTVILHESERDKLTGLLNRRTLEDRLRHTFAINPSTEENHKLWIAMLDIDHFKAI 191

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+FGH +GD+++   + Q+   FG    + R GGEEF       +E +     +  R+ 
Sbjct: 192 NDHFGHMIGDEILLMFAQQMQHYFGPSSQLFRFGGEEFVIIFSSGNEPQIKQQLDGFRQ- 250

Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
               QI   + P I  ++ SAG       + + TI+  AD+ALY AK+ GRN+V C+  +
Sbjct: 251 ----QIRRHNFPRIGELSFSAGFCSLRPGDYLPTILDHADKALYYAKEHGRNQVHCYEQL 306

Query: 262 ENN 264
             N
Sbjct: 307 CEN 309


>gi|325274524|ref|ZP_08140588.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas sp.
           TJI-51]
 gi|324100341|gb|EGB98123.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas sp.
           TJI-51]
          Length = 796

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 14/206 (6%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           P  GL ++  E  +  +     +L  GY++   + +L    + + +LS  D L+G+ N  
Sbjct: 593 PRAGLRWVRGEA-TPEVGEQGCTLWHGYLTD--ISDLKGVEHELRRLSVTDSLTGIHNRR 649

Query: 117 AFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            F   L +  E+       L+++  DID+FK+IND FGH VGD+V+  L  ++       
Sbjct: 650 YFQERLKNELERAQRDGQALAVIMLDIDHFKRINDRFGHAVGDRVLRSLCQRIGQRLRRT 709

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               RLGGEEF     G+  ++A +LA +L + + N  ++        +T S G+A    
Sbjct: 710 DVFCRLGGEEFMVLCPGTDAEQARVLALELWQGVRNDPVDGVG----QVTASFGVAGWRP 765

Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255
            E    ++ RAD  +Y AK++GR+RV
Sbjct: 766 GEGADALLLRADAGVYAAKQAGRDRV 791


>gi|134093674|ref|YP_001098749.1| hypothetical protein HEAR0398 [Herminiimonas arsenicoxydans]
 gi|133737577|emb|CAL60620.1| conserved hypothetical protein; putative GGDEF domain
           [Herminiimonas arsenicoxydans]
          Length = 475

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 79/133 (59%), Gaps = 7/133 (5%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGS 187
           LS+ F DID+FKQ+ND +GH  GDK +  LS  +   + G+ +FV R GGEEF     G+
Sbjct: 340 LSVAFLDIDHFKQVNDTYGHAAGDKALIALSRIIATQIRGSDIFV-RYGGEEFVLLFPGT 398

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQA 243
             +EA I+ N +R+ +  S  +     + H+TISAG+A    E    E    ++  AD A
Sbjct: 399 VAEEALIVLNRIRQAVA-SYCHTYDTATFHLTISAGLAFHMDEDMKHETAEGLLRTADNA 457

Query: 244 LYVAKKSGRNRVV 256
           LY AK++GRN+++
Sbjct: 458 LYTAKQNGRNQII 470


>gi|297580138|ref|ZP_06942065.1| GGDEF family protein [Vibrio cholerae RC385]
 gi|297535784|gb|EFH74618.1| GGDEF family protein [Vibrio cholerae RC385]
          Length = 326

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 92/183 (50%), Gaps = 15/183 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLN---------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142
           +++ +Y  I   S  D L+GLLN         H+  I+     N KL I   DID+FK I
Sbjct: 132 KIYRNYTVILHESERDKLTGLLNRRTLEDRLRHTFAINPSTEENHKLWIAMLDIDHFKAI 191

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+FGH +GD+++   + Q+   FG    + R GGEEF       +E +     +  R+ 
Sbjct: 192 NDHFGHMIGDEILLMFAQQMQHYFGPSSQLFRFGGEEFVIIFSSGNEPQIKQQLDGFRQ- 250

Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
               QI   + P I  ++ SAG       + + TI+  AD+ALY AK+ GRN+V C+  +
Sbjct: 251 ----QIRRHNFPRIGELSFSAGFCSLRPGDYLPTILDHADKALYYAKEHGRNQVHCYEQL 306

Query: 262 ENN 264
             N
Sbjct: 307 CEN 309


>gi|116254441|ref|YP_770279.1| sensory box GGDEF transmembrane protein [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115259089|emb|CAK10200.1| putative sensory box GGDEF transmembrane protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 541

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 89/164 (54%), Gaps = 10/164 (6%)

Query: 104 SRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           ++ D L+GL N        SA ++     +  +S+V FD+D+FK+IND  GH  GD V+ 
Sbjct: 353 AQTDLLTGLYNRRGFEVAASALLTQAEHGSRWISVVLFDLDHFKKINDVHGHDAGDAVLR 412

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++      F +   + R GGEEF A    S+  +AAI+A  +R  IE ++I + SG  +
Sbjct: 413 HVAGVARENFRSFDLLVRHGGEEFLALLPDSTPDDAAIVAGRVRLAIEAAEIPLPSGDVL 472

Query: 217 HITISAGIAERCHK---EPISTIIYRADQALYVAKKSGRNRVVC 257
            +T S G A R ++        ++ RAD ALY AK SGRN VV 
Sbjct: 473 KVTASFGCAGRANEATNRNFEDLVKRADLALYAAKASGRNCVVS 516


>gi|15601603|ref|NP_233234.1| GGDEF family protein [Vibrio cholerae O1 biovar eltor str. N16961]
 gi|121588182|ref|ZP_01677927.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|153817048|ref|ZP_01969715.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|153822477|ref|ZP_01975144.1| GGDEF family protein [Vibrio cholerae B33]
 gi|227812414|ref|YP_002812424.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|229506004|ref|ZP_04395513.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229510140|ref|ZP_04399620.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229517730|ref|ZP_04407175.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229605535|ref|YP_002876239.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254850005|ref|ZP_05239355.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255746403|ref|ZP_05420350.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262158243|ref|ZP_06029360.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|298499631|ref|ZP_07009437.1| GGDEF family protein [Vibrio cholerae MAK 757]
 gi|9658278|gb|AAF96746.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121547574|gb|EAX57676.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|126512458|gb|EAZ75052.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|126520000|gb|EAZ77223.1| GGDEF family protein [Vibrio cholerae B33]
 gi|227011556|gb|ACP07767.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|229345766|gb|EEO10739.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229352585|gb|EEO17525.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229356355|gb|EEO21273.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229372021|gb|ACQ62443.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254845710|gb|EET24124.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255736157|gb|EET91555.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262029925|gb|EEY48572.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|297541612|gb|EFH77663.1| GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 326

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 92/183 (50%), Gaps = 15/183 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLN---------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142
           +++ +Y  I   S  D L+GLLN         H+  I+     N KL I   DID+FK I
Sbjct: 132 KIYRNYTVILHESERDKLTGLLNRRTLEDRLRHTFAINPSTEENHKLWIAMLDIDHFKAI 191

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+FGH +GD+++   + Q+   FG    + R GGEEF       +E +     +  R+ 
Sbjct: 192 NDHFGHMIGDEILLMFAQQMQHYFGPSSQLFRFGGEEFVIIFSSGNEPQIKQQLDGFRQ- 250

Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
               QI   + P I  ++ SAG       + + TI+  AD+ALY AK+ GRN+V C+  +
Sbjct: 251 ----QIRRHNFPRIGELSFSAGFCSLRPGDYLPTILDHADKALYYAKEHGRNQVHCYEQL 306

Query: 262 ENN 264
             N
Sbjct: 307 CEN 309


>gi|306845025|ref|ZP_07477606.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1]
 gi|306274657|gb|EFM56446.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1]
          Length = 381

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 82/164 (50%), Gaps = 13/164 (7%)

Query: 101 SQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           S+ S ID LS + N   F   +         +   +I+  D+DYFK++ND +GH  GD+V
Sbjct: 219 SEQSEIDALSQIYNRRGFDRHVMRRLMRKGPDTPYAIIMSDLDYFKRVNDTYGHDCGDRV 278

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213
           I      L      P    R+GGEEF     G+     A+ A+DL + +  +   +S SG
Sbjct: 279 IEAFGGLLRTHLPKPAVAARMGGEEFVVFMPGAD----AVAAHDLAQTLRTTMTALSFSG 334

Query: 214 PSIHI--TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +     T S G+AE    E +   I RAD ALY AKK+GRNRV
Sbjct: 335 DAAEWMPTASFGVAEHRVGEGLYDTIRRADGALYEAKKAGRNRV 378


>gi|146280449|ref|YP_001170602.1| two-component response regulator [Pseudomonas stutzeri A1501]
 gi|145568654|gb|ABP77760.1| probable two-component response regulator [Pseudomonas stutzeri
           A1501]
          Length = 546

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 77/156 (49%), Gaps = 7/156 (4%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLL H+     L           +  S+V  D+D+FKQ+ND +GH  GD VI  L+
Sbjct: 386 DSLTGLLKHADIKEQLALEVQRSSRSGKPASVVMLDLDHFKQVNDTYGHAAGDNVIRALA 445

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L         +GR GGEEF A     S  +A  + +++R        N        +T
Sbjct: 446 NLLRQRLRRIDSLGRYGGEEFVAVLPECSALQARRIFDEIRVRFAALTFNAGDHQEFRVT 505

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            SAGI E       S ++ RADQALY+AK  GRN+V
Sbjct: 506 FSAGICETDEHSAASVLLERADQALYLAKHQGRNQV 541


>gi|90425013|ref|YP_533383.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
 gi|90107027|gb|ABD89064.1| diguanylate cyclase (GGDEF domain) [Rhodopseudomonas palustris
           BisB18]
          Length = 227

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 11/156 (7%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   LG        Y   LS++ +DID+FK++ND +GH  GD+V+  LS
Sbjct: 56  DPLTGLFNRGKFDVVLGYELARAERYGNPLSLIVYDIDHFKEVNDAYGHQAGDRVLVQLS 115

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +         + R GGEEF      +    A ++A  LR+ IE S  +++      IT
Sbjct: 116 AIVSAAIRQTDLLVRWGGEEFVLVLPDTDGATARLVAEKLRQAIEQSGFDLAG----TIT 171

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G++     + + +++ R D ALY AK +GRNRV
Sbjct: 172 CSFGVSIYVEGDSVDSLVARTDNALYRAKMNGRNRV 207


>gi|254228896|ref|ZP_04922318.1| ggdef domain protein [Vibrio sp. Ex25]
 gi|151938573|gb|EDN57409.1| ggdef domain protein [Vibrio sp. Ex25]
          Length = 480

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 88/172 (51%), Gaps = 11/172 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFG 147
           ++L I+  ++ +++  D L+ L N    I  L   N     L+++ FDID FK IND +G
Sbjct: 297 RQLTIANQQLLEMTLTDSLTKLYNRRHLIEQLALLNHLQRSLTVMVFDIDDFKSINDQYG 356

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD+ I  +++    +    M + R+GGEEFA      SE+EA   A  L K +    
Sbjct: 357 HLVGDRAIVAVAETAKSMTDERMTLARIGGEEFALVTASLSEREARNFAQMLCKAVYEQP 416

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYR---ADQALYVAKKSGRNRVV 256
           I I  G +IH++IS G    C   P  T I     ADQ +Y  K  G+NR V
Sbjct: 417 I-ILGGQAIHLSISLG----CAYYPEFTHIVNLQDADQLMYQGKSEGKNRAV 463


>gi|291286343|ref|YP_003503159.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809]
 gi|290883503|gb|ADD67203.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809]
          Length = 370

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 84/164 (51%), Gaps = 11/164 (6%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +LS  D L+ L N   F +           Y   LS++  D DYFK INDNFGH  GDK
Sbjct: 207 KELSETDPLTKLYNRRYFFNKADVEFARSKRYGSPLSLIIADADYFKNINDNFGHQTGDK 266

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+   ++ L           R GGEEF      ++  EA  +A   R  I +++ +    
Sbjct: 267 VLIKTANILNAKLRPSDIACRFGGEEFCILLPETNIIEAQNVAERFRSEISSARFD---N 323

Query: 214 PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +H+T S GIA+ +   E +S ++ RAD+ALY AKKSGRN ++
Sbjct: 324 KEVHLTCSFGIAQFKETDEELSHMVSRADEALYKAKKSGRNTII 367


>gi|119776019|ref|YP_928759.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B]
 gi|119768519|gb|ABM01090.1| GGDEF domain protein protein [Shewanella amazonensis SB2B]
          Length = 424

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 8/162 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
            + +L+  D L+G+ N SAF S   +   K       + I+  D+D+FK IND FGH  G
Sbjct: 247 ELEKLAYTDGLTGIANRSAFFSRAEAELRKSHRLSYDVGILMLDLDHFKSINDTFGHEAG 306

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++D +          GR+GGEEFA    G+ +     LA  L+  + N+ ++  
Sbjct: 307 DNVLKLVADTISTCLREIDMFGRVGGEEFAILVPGTDKFGMQALAERLKSAVSNTDVSFL 366

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
                 I++S G  +    E + + + RAD+ LY AK++GRN
Sbjct: 367 DAEK-KISVSIGYTKIYPNESLKSALKRADENLYSAKRNGRN 407


>gi|329897316|ref|ZP_08272034.1| GGDEF domain protein [gamma proteobacterium IMCC3088]
 gi|328921247|gb|EGG28646.1| GGDEF domain protein [gamma proteobacterium IMCC3088]
          Length = 488

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 97/182 (53%), Gaps = 8/182 (4%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFF 134
           LG +     ++L  + +R+++ +R D L+ LLN   F       I+++ +    LS++  
Sbjct: 296 LGELVNERTQQLRDANSRLARHAREDALTQLLNRRGFQESAEQIIANVQAQGSTLSLILC 355

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D+FK+IND +GH VGD+V+  L+  L +       +GR GGEEF       S   A  
Sbjct: 356 DVDHFKRINDRYGHAVGDRVLQHLARHLGLNIRDVDILGRWGGEEFILVLPDLSLSGAQT 415

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           LA  L   +  SQI    G  + +T++ G+A+    + + ++I RAD ALY  K  GR +
Sbjct: 416 LAQRLCDSLP-SQIFRIDGIRLGLTMTFGVAQWRQGDTLESLIARADVALYEGKTRGRCQ 474

Query: 255 VV 256
           VV
Sbjct: 475 VV 476


>gi|300703321|ref|YP_003744923.1| signal transduction ggdef domain transmembrane protein [Ralstonia
           solanacearum CFBP2957]
 gi|299070984|emb|CBJ42293.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum CFBP2957]
          Length = 554

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 9/155 (5%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+L    F++   +         E L +V  D+D+FK+IND +GH VGD  +   +
Sbjct: 398 DHLTGVLTRRRFLALFETVLTRAHVRGESLVLVLADLDHFKRINDTWGHAVGDLALQRFA 457

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
                V  +   +GRLGGEEFA     ++ ++AA +   LR I+  +  ++ SG  + +T
Sbjct: 458 SLATGVMRSSDLIGRLGGEEFAVVMSSTTLEDAAGVVERLRAIVAEADDSLPSG--LTMT 515

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +S G+      +  S ++ RAD ALY AK+SGRNR
Sbjct: 516 VSLGMTACRSGDTASEMLRRADLALYRAKESGRNR 550


>gi|264678525|ref|YP_003278432.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262209038|gb|ACY33136.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 255

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 87/172 (50%), Gaps = 10/172 (5%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+GL N   F       I  +    E   ++  DID+FKQIND  GH  GD V+
Sbjct: 44  LSLRDPLTGLANRRHFRSVIEREIDRVARSGETALLLMLDIDHFKQINDEHGHIAGDMVL 103

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L  +      + R GGEEFA         +   +A  LR+ IE++ I +SSG S
Sbjct: 104 QSVAQTLSEIIRPMDTLARFGGEEFAIVLPVCPAHQGRAVAERLRQAIESNSIALSSGQS 163

Query: 216 IHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           + +T+S G   A++  +        RAD+ LY+AK +GRN  VC  D  ++T
Sbjct: 164 LKVTVSIGGVYAQQWIRSTAQLWTERADRQLYLAKSAGRN-CVCVEDPPDST 214


>gi|194431836|ref|ZP_03064126.1| diguanylate cyclase (GGDEF) domain protein [Shigella dysenteriae
           1012]
 gi|194419744|gb|EDX35823.1| diguanylate cyclase (GGDEF) domain protein [Shigella dysenteriae
           1012]
 gi|320179757|gb|EFW54705.1| hypothetical protein SGB_03079 [Shigella boydii ATCC 9905]
          Length = 374

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 210 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 267

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 268 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSI 326

Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254
           G+       R   +  + ++  AD  LY +KK GRNR
Sbjct: 327 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 363


>gi|323495196|ref|ZP_08100280.1| protein kinase [Vibrio brasiliensis LMG 20546]
 gi|323310555|gb|EGA63735.1| protein kinase [Vibrio brasiliensis LMG 20546]
          Length = 1679

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 59/163 (36%), Positives = 84/163 (51%), Gaps = 15/163 (9%)

Query: 103  LSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            LS  D L+GL N        H A     G  +  +SI+  DID+FK IND FGH VGDKV
Sbjct: 1519 LSTTDQLTGLYNRRYVEERIHEALRQEPGDGSTPVSILMLDIDHFKSINDQFGHDVGDKV 1578

Query: 155  IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDLRKIIENSQINISSG 213
            I  +S  +     +    GR GGEEF    +  S+ E A+  A  L  II        + 
Sbjct: 1579 IVNVSGSIRKSVRSVDIPGRWGGEEFIVLCM--SDLEGAVSNAEKLGNIIAEQ----DNS 1632

Query: 214  PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            P   +T+S G+     ++ + +++ R D+ALY AK SGRN+++
Sbjct: 1633 PVGQVTVSIGVTSLLSQDTVDSLLTRVDKALYQAKNSGRNQII 1675


>gi|299530973|ref|ZP_07044386.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298720930|gb|EFI61874.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 253

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 87/172 (50%), Gaps = 10/172 (5%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+GL N   F       I  +    E   ++  DID+FKQIND  GH  GD V+
Sbjct: 42  LSLRDPLTGLANRRHFRSVIEREIDRVARSGETALLLMLDIDHFKQINDEHGHIAGDMVL 101

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L  +      + R GGEEFA         +   +A  LR+ IE++ I +SSG S
Sbjct: 102 QSVAQTLSEIIRPMDTLARFGGEEFAIVLPVCPAHQGRAVAERLRQAIESNSIALSSGQS 161

Query: 216 IHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           + IT+S G   A++  +        RAD+ LY+AK +GRN  VC  D  ++T
Sbjct: 162 LKITVSIGGVYAQQWIRSTAQLWTERADRQLYLAKSAGRN-CVCVEDPPDST 212


>gi|295689530|ref|YP_003593223.1| diguanylate cyclase [Caulobacter segnis ATCC 21756]
 gi|295431433|gb|ADG10605.1| diguanylate cyclase [Caulobacter segnis ATCC 21756]
          Length = 353

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 92/186 (49%), Gaps = 19/186 (10%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           S S ++ L     ++ + +  D L+ L N  AF   L             L +   DID+
Sbjct: 162 STSEVERLREHLEQVRREATTDGLTNLANRKAFDEELDRACAEADRQGTPLCLAVLDIDH 221

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-------AAALGSSEQE 191
           FK  ND +GH  GD+VI +++  +  V   P F  R GGEEFA       +A + +S +E
Sbjct: 222 FKGFNDTWGHQTGDQVIRYVASVIGRVAAPPRFAARYGGEEFAMIFPRENSAVIAASLEE 281

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
             +  +   ++++    N   G    ITIS+G AER   E   +I+ RAD ALY +K++G
Sbjct: 282 IRVEVSS--RMLKRRSTNEDLGA---ITISSGFAERRPGESGHSIMERADAALYASKRNG 336

Query: 252 RNRVVC 257
           RNRV  
Sbjct: 337 RNRVTA 342


>gi|86749641|ref|YP_486137.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
 gi|86572669|gb|ABD07226.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
          Length = 350

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 92/178 (51%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
           S + ++  +   + +L+  D ++G+ N   F++           Y   LS +  DID+FK
Sbjct: 149 SDVTDIVRNAEELERLATTDGMTGIFNRRHFLTLADREWARARRYGRPLSCLMIDIDHFK 208

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND+FGH VGD +I  L+            + R+GGEEFA     +   +A  +A  LR
Sbjct: 209 SINDDFGHQVGDDMIVHLAKLARDCKRDCDVLARIGGEEFALLLPETDLPQALAVAERLR 268

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
             +  S + ++SG S+  T+S G A      + IS ++  AD+ALY AK  GRNRVVC
Sbjct: 269 GEVAASSLLMASG-SVRATVSIGAATSAATIDGISDLMRAADRALYEAKHGGRNRVVC 325


>gi|78484802|ref|YP_390727.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78363088|gb|ABB41053.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2]
          Length = 349

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 99/178 (55%), Gaps = 9/178 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEKLS---IVFFDIDY 138
           S  I++ L    ++ + +++ D L+ + N   F     + +   NEK S   ++  DID+
Sbjct: 167 SAEIMR-LKKELDKATAIAKTDELTNIPNRRGFNEIIENMMKEANEKQSSFALLVLDIDF 225

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++ND +GH VGD ++ +L+  L         + R+GGEEF A    +S   A  LAN 
Sbjct: 226 FKKVNDTYGHLVGDSILRYLAKSLHNETKGKDSIARIGGEEFVAILPSTSYDSALKLANT 285

Query: 199 LRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +R+ I +  +++ +  + I +TIS G+A     E + ++  RAD+ LY+AK +GRNRV
Sbjct: 286 IREKIASRPLHVKNNANPITLTISIGVAMFQLNETLDSLFTRADKCLYMAKSNGRNRV 343


>gi|46580215|ref|YP_011023.1| GGDEF domain-containing protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602400|ref|YP_966800.1| diguanylate cyclase [Desulfovibrio vulgaris DP4]
 gi|46449632|gb|AAS96282.1| GGDEF domain protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|120562629|gb|ABM28373.1| diguanylate cyclase [Desulfovibrio vulgaris DP4]
 gi|311233799|gb|ADP86653.1| diguanylate cyclase [Desulfovibrio vulgaris RCH1]
          Length = 487

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 11/172 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFG 147
           + Y  I   +  D L+ L N  +F   L         Y   ++++  DID+FK +ND +G
Sbjct: 304 VVYREIKLQADHDALTQLHNRRSFDHRLAEEVDRHQRYGMPMTLLMLDIDHFKAVNDTYG 363

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           HP GD V+  ++  +     T  F  R GGEEF      +  +   I A  LRK + +S+
Sbjct: 364 HPAGDAVLREVAQTMRNACRTTDFAARYGGEEFCVILPHTDGKCGRIFAERLRKRLASSR 423

Query: 208 INISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257
           + +  G +I +T+S G+A      P+S   ++  AD ALY AK +GRN +VC
Sbjct: 424 VEV-DGKTIAVTVSIGLATLSAAAPLSPERLVCEADGALYAAKAAGRN-IVC 473


>gi|119898350|ref|YP_933563.1| REC/GGDEF-domain-containing protein [Azoarcus sp. BH72]
 gi|119670763|emb|CAL94676.1| probable REC/GGDEF-domain containing protein [Azoarcus sp. BH72]
          Length = 325

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 13/184 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           + ++L  +   +++LS +D L+G+ N   F  +L             ++++  D+D FKQ
Sbjct: 131 VTRKLDEANRELTRLSSVDGLTGIPNRRRFDETLLREWRRAARTGHPIALLVADVDSFKQ 190

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND +GH VGD+ +  ++  L      P   V R GGEEFAA    +S + AA +A  +R
Sbjct: 191 FNDGYGHQVGDECLKAVARTLEQRLRRPTDLVARYGGEEFAAILPETSVEGAAAVAETMR 250

Query: 201 KIIENSQIN---ISSGP--SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +E+  I     +SGP  SI I ++A +  R  +     ++  AD ALY AK +GRNRV
Sbjct: 251 AGVESLCITHRFSTSGPVVSISIGVAAIVPARGDENGFVALLKSADDALYRAKAAGRNRV 310

Query: 256 VCFS 259
           V  S
Sbjct: 311 VTHS 314


>gi|269961820|ref|ZP_06176177.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833398|gb|EEZ87500.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 543

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 15/169 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++ L+  D L+ L N  A I+ +         ++   S++  D+DYFK +ND FGH VG
Sbjct: 378 KLTWLAMYDPLTNLFNRRALINQVHQELVNKAMHSHSTSLILIDLDYFKAVNDTFGHDVG 437

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK--IIENSQIN 209
           D+V+  ++D L         + R GGEEF      +S +++  +A +L++   +EN    
Sbjct: 438 DQVLMHVADFLSANVRKQDLIARWGGEEFVILLRDTSIEQSEQIATNLQEKMTLEN---- 493

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
               P   +T SAG+A     +    +I  AD+ALY AKKSGRN V  +
Sbjct: 494 --FSPVTSMTFSAGVATLSAGQSFDDLIANADKALYTAKKSGRNCVKSW 540


>gi|238755553|ref|ZP_04616891.1| Diguanylate cyclase [Yersinia ruckeri ATCC 29473]
 gi|238706233|gb|EEP98612.1| Diguanylate cyclase [Yersinia ruckeri ATCC 29473]
          Length = 376

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 94/186 (50%), Gaps = 3/186 (1%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS 130
           +S T+ L + Y + +  +    +Y  +   + ID L+ L N ++   +++ L +      
Sbjct: 164 LSSTLCLAICYHALNFKERHIHAYFSMKDRANIDNLTRLNNRASVDFYLAQLHAQRRACG 223

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D FK INDN+GH +GD+++  +   L        FVGR GGEEF         +
Sbjct: 224 LLLMDLDKFKAINDNYGHAIGDQILTSVGAILKQTVRCLDFVGRFGGEEFIVITESHHPE 283

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
               +A  LR+ +E  ++ ++ G  +H+TIS G +       +   I  AD ALY AK  
Sbjct: 284 HIKKIAECLRENVEQLKVTLNDGREMHVTISIGASLYLPGMSMLKAIEMADDALYQAKNQ 343

Query: 251 GRNRVV 256
           GRN+VV
Sbjct: 344 GRNQVV 349


>gi|196036155|ref|ZP_03103555.1| GGDEF domain protein [Bacillus cereus W]
 gi|196041011|ref|ZP_03108308.1| diguanylate cyclase (GGDEF) domain protein [Bacillus cereus
           NVH0597-99]
 gi|218906595|ref|YP_002454429.1| GGDEF domain protein [Bacillus cereus AH820]
 gi|228949140|ref|ZP_04111410.1| GGDEF domain protein [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|229094525|ref|ZP_04225594.1| GGDEF domain protein [Bacillus cereus Rock3-42]
 gi|301056881|ref|YP_003795092.1| hypothetical protein BACI_c54090 [Bacillus anthracis CI]
 gi|195991322|gb|EDX55290.1| GGDEF domain protein [Bacillus cereus W]
 gi|196028179|gb|EDX66789.1| diguanylate cyclase (GGDEF) domain protein [Bacillus cereus
           NVH0597-99]
 gi|218537650|gb|ACK90048.1| GGDEF domain protein [Bacillus cereus AH820]
 gi|228688909|gb|EEL42739.1| GGDEF domain protein [Bacillus cereus Rock3-42]
 gi|228810581|gb|EEM56932.1| GGDEF domain protein [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|300379050|gb|ADK07954.1| conserved hypothetical protein, GGDEF domain in C-terminal region
           [Bacillus cereus biovar anthracis str. CI]
          Length = 351

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 24/233 (10%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91
           S+F   + F  N++  +I   P      +L +++S+V + +  S +  YI+      +L+
Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQ 179

Query: 92  --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
             ELF    ++ Q + ID L+GL N   F       I +    N  L ++  DID+FK +
Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSV 236

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GHP GD+V+  +   L  V   P    R GGEEFA             +   +R  
Sbjct: 237 NDTYGHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAA 296

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E     +  G  I IT+S GI+   +++     I  AD ALY +K++GRN+V
Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|152968104|ref|YP_001363888.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216]
 gi|151362621|gb|ABS05624.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216]
          Length = 490

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 23/192 (11%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN------HSAFISSLG 123
           SL ++++ ++ +       +L++L     R+  ++R D L+GL N      H A +   G
Sbjct: 303 SLALVALVVARVW-----DLLQQLRRQSQRLEAMARTDPLTGLANRRTLDHHLARVCRPG 357

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
           +  E + +   D+D+FK  ND+ GH  GD ++   S       G    + R GGEEF A 
Sbjct: 358 TPGE-VVLALLDLDHFKAYNDSRGHQAGDDLLRAASAAWTAHLGPRGLLARWGGEEFVAV 416

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
            +  S + A  L ++LR ++   Q           T S G++     EP +  + RAD  
Sbjct: 417 VVDESVERATALLDELRALVPEGQ-----------TCSVGVSRWDRAEPPAEALRRADAF 465

Query: 244 LYVAKKSGRNRV 255
           LY AK +GR+R+
Sbjct: 466 LYAAKAAGRDRL 477


>gi|70732377|ref|YP_262133.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5]
 gi|68346676|gb|AAY94282.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5]
          Length = 507

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 89/179 (49%), Gaps = 14/179 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           L+    +   +++L+ +D L+GL N       LG+        N  LS++  D+D+FK  
Sbjct: 321 LRRRQSAEQELARLAAVDALTGLANRRTLDQVLGNEWSRARRANLPLSLLMVDVDHFKSF 380

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGHP+GD+ +  ++  +    G P     R GGEEFA    G+    AA+LA  +R 
Sbjct: 381 NDRFGHPLGDQALRAVAQSIGACVGRPSDLAARYGGEEFAVILPGTDSAGAAVLAEKIRT 440

Query: 202 IIEN-SQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVC 257
            I     I+  + P   +T+S GI        I     +  AD+ALY AK SGRNRVV 
Sbjct: 441 SIAALPAISEHAAP---LTVSIGINTWSGNADIGLEQWVSDADKALYQAKYSGRNRVVS 496


>gi|304396473|ref|ZP_07378354.1| diguanylate cyclase [Pantoea sp. aB]
 gi|304355982|gb|EFM20348.1| diguanylate cyclase [Pantoea sp. aB]
          Length = 365

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 91/179 (50%), Gaps = 7/179 (3%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQIND 144
           ++ +L+      S LS +D L+GL N     + L +  E  +    ++  DID+FK  ND
Sbjct: 176 LMHQLYEEKETFSDLSMLDPLTGLYNRRGLKNRLDNILENHAGSHYVLLLDIDHFKAYND 235

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH +GD+ +A +S  +     +   V R GGEEF       +   A  LA  +R+ + 
Sbjct: 236 NYGHAMGDQALARVSVAIRDAVRSRDVVTRYGGEEFLVLMTNVNSSIAMKLAERIRQYVL 295

Query: 205 NSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           + +I    +   S H+TISAGIA   +       +  AD ALYVAK  GRN ++ + D+
Sbjct: 296 DLEIPHLFNETVSTHVTISAGIAP-IYDNDFDQAVANADSALYVAKNQGRNTILAWEDL 353


>gi|300117932|ref|ZP_07055699.1| GGDEF domain protein [Bacillus cereus SJ1]
 gi|298724796|gb|EFI65471.1| GGDEF domain protein [Bacillus cereus SJ1]
          Length = 351

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 24/233 (10%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91
           S+F   + F  N++  +I   P      +L +++S+V + +  S +  YI+      +L+
Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQ 179

Query: 92  --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
             ELF    ++ Q + ID L+GL N   F       I +    N  L ++  DID+FK +
Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSV 236

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GHP GD+V+  +   L  V   P    R GGEEFA             +   +R  
Sbjct: 237 NDTYGHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAA 296

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E     +  G  I IT+S GI+   +++     I  AD ALY +K++GRN+V
Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|153836385|ref|ZP_01989052.1| diguanylate cyclase (GGDEF) domain containing protein [Vibrio
           parahaemolyticus AQ3810]
 gi|149750287|gb|EDM61032.1| diguanylate cyclase (GGDEF) domain containing protein [Vibrio
           parahaemolyticus AQ3810]
          Length = 456

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 10/148 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL-----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GLLN   F  S   +  +L     S++  D D  K+IND +GH VGD+VI  ++D 
Sbjct: 308 DDLTGLLNRRVFKDS--EFKRRLKTAPYSVIAIDGDRIKRINDRYGHHVGDEVIEIIADA 365

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +  VF T  ++ R GG+EF A   G S  ++++LA  LR +++++++       I +++S
Sbjct: 366 MRKVFRTSDYLVRTGGDEFIAILPGCSISQSSMLAKKLRSVVKDNRLKT---LDIEVSVS 422

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKK 249
            G+A     E +  +I RAD+ LY  KK
Sbjct: 423 TGVAANESHESLQDVIVRADEDLYEMKK 450


>gi|209518928|ref|ZP_03267739.1| diguanylate cyclase [Burkholderia sp. H160]
 gi|209500651|gb|EEA00696.1| diguanylate cyclase [Burkholderia sp. H160]
          Length = 414

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 91/180 (50%), Gaps = 21/180 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ QL   D L+GL N   F   L         Y+  ++ +F DID FK IND  GH  
Sbjct: 233 ERLKQLGMTDSLTGLANRRYFDERLREELMRAVRYHAPVACLFIDIDGFKLINDTHGHQT 292

Query: 151 GDKVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           GD+ +A ++    Q V +  T   V R GGEEF AA L     +A  +A  +R  +EN  
Sbjct: 293 GDRALAEVAACVRQQVRLGDT---VARYGGEEF-AALLQGDRADALTVAERVRSAVENLD 348

Query: 208 INISSGPSIHITISAGIAER----CHKEPIS---TIIYRADQALYVAKKSGRNRVVCFSD 260
           +    G  I +T+S G+A R       E +S    ++  AD+A+Y+AK++GRNR+    D
Sbjct: 349 VRDEHGERIALTVSIGVAARVVSGTSAEAMSLGQAMMDEADRAMYLAKRNGRNRIEAHVD 408


>gi|150397247|ref|YP_001327714.1| diguanylate cyclase [Sinorhizobium medicae WSM419]
 gi|150028762|gb|ABR60879.1| diguanylate cyclase [Sinorhizobium medicae WSM419]
          Length = 438

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 8/161 (4%)

Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G L+  A +       +   +     + +  D+D+FKQIND +GH  GD  +A  +
Sbjct: 248 DGLTGALSRGALMEEGEQIFAECLTRRRPAAFLLLDLDFFKQINDQYGHACGDMALAHFA 307

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           D +         +GR+GGEEF       +E++A  LA ++ +I+  +     S   I +T
Sbjct: 308 DTVSTFLAGRGVLGRIGGEEFGIVLPDHTEEQAKALAEEICRIVRETPAG-RSHQRIRLT 366

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +S GIA     E I+ ++ RAD ALY +K  GR+R     D
Sbjct: 367 VSIGIAAATAHETIADVMIRADLALYDSKADGRDRCTIARD 407


>gi|30265434|ref|NP_847811.1| GGDEF domain-containing protein [Bacillus anthracis str. Ames]
 gi|47530994|ref|YP_022343.1| GGDEF domain-containing protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188252|ref|YP_031505.1| GGDEF domain-containing protein [Bacillus anthracis str. Sterne]
 gi|65317396|ref|ZP_00390355.1| COG2199: FOG: GGDEF domain [Bacillus anthracis str. A2012]
 gi|165871271|ref|ZP_02215920.1| GGDEF domain protein [Bacillus anthracis str. A0488]
 gi|167635791|ref|ZP_02394101.1| GGDEF domain protein [Bacillus anthracis str. A0442]
 gi|167640369|ref|ZP_02398633.1| GGDEF domain protein [Bacillus anthracis str. A0193]
 gi|170688218|ref|ZP_02879429.1| GGDEF domain protein [Bacillus anthracis str. A0465]
 gi|170708020|ref|ZP_02898468.1| GGDEF domain protein [Bacillus anthracis str. A0389]
 gi|177651838|ref|ZP_02934421.1| GGDEF domain protein [Bacillus anthracis str. A0174]
 gi|190568904|ref|ZP_03021806.1| GGDEF domain protein [Bacillus anthracis Tsiankovskii-I]
 gi|227818183|ref|YP_002818192.1| GGDEF domain protein [Bacillus anthracis str. CDC 684]
 gi|228930423|ref|ZP_04093424.1| GGDEF domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229600552|ref|YP_002869626.1| GGDEF domain protein [Bacillus anthracis str. A0248]
 gi|254687144|ref|ZP_05151002.1| GGDEF domain protein [Bacillus anthracis str. CNEVA-9066]
 gi|254724073|ref|ZP_05185858.1| GGDEF domain protein [Bacillus anthracis str. A1055]
 gi|254735535|ref|ZP_05193242.1| GGDEF domain protein [Bacillus anthracis str. Western North America
           USA6153]
 gi|254742200|ref|ZP_05199887.1| GGDEF domain protein [Bacillus anthracis str. Kruger B]
 gi|254755889|ref|ZP_05207921.1| GGDEF domain protein [Bacillus anthracis str. Vollum]
 gi|254761601|ref|ZP_05213621.1| GGDEF domain protein [Bacillus anthracis str. Australia 94]
 gi|30260112|gb|AAP29297.1| diguanylate cyclase (GGDEF) domain protein [Bacillus anthracis str.
           Ames]
 gi|47506142|gb|AAT34818.1| GGDEF domain protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49182179|gb|AAT57555.1| GGDEF domain protein [Bacillus anthracis str. Sterne]
 gi|164712938|gb|EDR18466.1| GGDEF domain protein [Bacillus anthracis str. A0488]
 gi|167511589|gb|EDR86971.1| GGDEF domain protein [Bacillus anthracis str. A0193]
 gi|167528900|gb|EDR91657.1| GGDEF domain protein [Bacillus anthracis str. A0442]
 gi|170126993|gb|EDS95872.1| GGDEF domain protein [Bacillus anthracis str. A0389]
 gi|170667911|gb|EDT18663.1| GGDEF domain protein [Bacillus anthracis str. A0465]
 gi|172082542|gb|EDT67606.1| GGDEF domain protein [Bacillus anthracis str. A0174]
 gi|190559971|gb|EDV13954.1| GGDEF domain protein [Bacillus anthracis Tsiankovskii-I]
 gi|227003653|gb|ACP13396.1| diguanylate cyclase (GGDEF) domain protein [Bacillus anthracis str.
           CDC 684]
 gi|228829270|gb|EEM74906.1| GGDEF domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229264960|gb|ACQ46597.1| GGDEF domain protein [Bacillus anthracis str. A0248]
          Length = 351

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 24/233 (10%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91
           S+F   + F  N++  +I   P      +L +++S+V + +  S +  YI+      +L+
Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQ 179

Query: 92  --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
             ELF    ++ Q + ID L+GL N   F       I +    N  L ++  DID+FK +
Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSV 236

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GHP GD+V+  +   L  V   P    R GGEEFA             +   +R  
Sbjct: 237 NDTYGHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAA 296

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E     +  G  I IT+S GI+   +++     I  AD ALY +K++GRN+V
Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPERFIQAADDALYYSKRNGRNQV 347


>gi|261821129|ref|YP_003259235.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
 gi|261605142|gb|ACX87628.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
          Length = 470

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 73/130 (56%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           N  LSI   DID+FK +ND +GH  GD ++  +++ L        +V R GGEEF    +
Sbjct: 336 NTPLSIAMIDIDHFKSVNDTYGHAAGDSILKRIAEILYESTRNSDYVFRYGGEEFMIVLI 395

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            + +  A  +   LRK I++  I++ +G S+ +TISAGIA          +I  AD ALY
Sbjct: 396 ETPKVAAYTIIERLRKKIQDHTIHLQNGESVTMTISAGIAVYSGHPDYECLIKAADDALY 455

Query: 246 VAKKSGRNRV 255
            AK +GRNR+
Sbjct: 456 QAKANGRNRI 465


>gi|82544130|ref|YP_408077.1| hypothetical protein SBO_1640 [Shigella boydii Sb227]
 gi|209918803|ref|YP_002292887.1| hypothetical protein ECSE_1612 [Escherichia coli SE11]
 gi|81245541|gb|ABB66249.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|209912062|dbj|BAG77136.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|332094880|gb|EGI99922.1| hypothetical protein SD15574_1615 [Shigella dysenteriae 155-74]
 gi|332095593|gb|EGJ00605.1| hypothetical protein SB359474_1893 [Shigella boydii 3594-74]
          Length = 315

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 100/190 (52%), Gaps = 10/190 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129
           ++ I  I +S  +  I+ S++K++ +  +    L+++   SGL  + A  S      + L
Sbjct: 120 TMAICPIMVSFSVAAIN-SLMKQVALRAD-FDFLTQVYSRSGL--YEALKSPSLKQTQHL 175

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DIDYFK INDN+GH  GDKV++  +  +  + G    V R+GGEEFA A    + 
Sbjct: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQAL 244
            +  ++A  +RK +E          ++++T+S G+       R   +  + ++  AD  L
Sbjct: 236 VDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSIGVGSGRASYRTLTDDFNKLMVEADTCL 294

Query: 245 YVAKKSGRNR 254
           Y +KK GRNR
Sbjct: 295 YRSKKDGRNR 304


>gi|332091297|gb|EGI96386.1| hypothetical protein SB521682_1746 [Shigella boydii 5216-82]
          Length = 315

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 151 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 208

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 209 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSI 267

Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254
           G+       R   +  + ++  AD  LY +KK GRNR
Sbjct: 268 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 304


>gi|291279016|ref|YP_003495851.1| hypothetical protein DEFDS_0613 [Deferribacter desulfuricans SSM1]
 gi|290753718|dbj|BAI80095.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 324

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 86/158 (54%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ + N   F S L +  EK+        ++FFDID+FK+IND +GH +GD V+ +LS
Sbjct: 170 DELTQIYNRRYFQSVLKNELEKVKRYNIDSCLLFFDIDFFKKINDTYGHDIGDLVLKYLS 229

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +     T     R+GGEEFA     ++ ++A  +A  +R I EN            +T
Sbjct: 230 SLVKNSIRTTDQFFRIGGEEFAIILTNTTLKDATQVAEKIRIITENYTFEKVG----KVT 285

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IS GI +  + +   ++  RAD+ALY +KKSGRN+V  
Sbjct: 286 ISIGITKIKNTDTEESLYKRADEALYQSKKSGRNKVTV 323


>gi|149376889|ref|ZP_01894644.1| GGDEF family protein [Marinobacter algicola DG893]
 gi|149358781|gb|EDM47250.1| GGDEF family protein [Marinobacter algicola DG893]
          Length = 356

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 86/167 (51%), Gaps = 17/167 (10%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++L+  D L+G LN S     L         Y    S++  D+DYFK IND +GH  GD
Sbjct: 174 LTRLATTDPLTGCLNRSQLADILNGQIQMRERYERVSSLILLDLDYFKMINDRWGHLAGD 233

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KV+  L+ ++         + R+GGEEF      + +++A  +A +L         +IS+
Sbjct: 234 KVLQELTQRIGRRLRESDRLFRIGGEEFMLVLPETRQKDADKVAREL-------LTSISA 286

Query: 213 GP---SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            P    I IT SA +AE    E  S  + RADQALY AK  GRN+V+
Sbjct: 287 RPFVEGIQITASASVAEVGKGETWSVWLNRADQALYEAKARGRNQVI 333


>gi|153832862|ref|ZP_01985529.1| ggdef family protein [Vibrio harveyi HY01]
 gi|148870785|gb|EDL69684.1| ggdef family protein [Vibrio harveyi HY01]
          Length = 480

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 9/171 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           ++L ++  ++ +L+  D L+ L N    I   ++L +    L+++ FDID FK IND FG
Sbjct: 297 RQLTVANQQLFELTLTDPLTKLYNRRHLIERLATLSNVRRNLTVMVFDIDDFKSINDQFG 356

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD+ I  +++    V    M + R+GGEEFA      S +EA +LA  +   +  S 
Sbjct: 357 HVVGDQAIIAVANTARTVIDERMTLARIGGEEFALVTASLSAEEAEVLARTICTQVHCSP 416

Query: 208 INISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +  G +I ++IS G A   +  ++P    +  ADQ +Y  K +G+NR V
Sbjct: 417 VTL-DGQTISVSISLGCAYYPKFDEQP---SLQDADQLMYRGKANGKNRAV 463


>gi|94263584|ref|ZP_01287394.1| PAS:GGDEF:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|93456004|gb|EAT06155.1| PAS:GGDEF:Response regulator receiver [delta proteobacterium
           MLMS-1]
          Length = 469

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 102/221 (46%), Gaps = 21/221 (9%)

Query: 46  ANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE--LFISYNRISQL 103
             IF +++  TPF G    L+     ++  IT       I+  +L E  L  S  R  +L
Sbjct: 258 GEIFHYHVLATPFKGPAGDLIG----IVEHITD------ITSRVLAEQALQKSEQRYKEL 307

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S +D L+GL N   F       +     Y   LS++  DID FK  ND +GHP GD+V++
Sbjct: 308 SIVDELTGLFNKRYFNKHLRLEVERARRYQHPLSLLIMDIDNFKHYNDTYGHPAGDRVLS 367

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            L   L           R GGEEF      +  +    LA  LR+     +     G  I
Sbjct: 368 ALGGMLRDSMRLNDLACRFGGEEFVVILPMTDGETGLKLAERLRERFAALEFQPLEGVVI 427

Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             T+S G+A+  C + P  +++ RAD+ LY AK +GR+R +
Sbjct: 428 RKTMSVGVAQFDCEENP-ESLLARADKNLYAAKAAGRDRSI 467


>gi|289675078|ref|ZP_06495968.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 367

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 92/185 (49%), Gaps = 18/185 (9%)

Query: 86  SGSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKLS 130
            GS+L   F+S      R+ Q    LS  D L+G  N   F       +  +  +   LS
Sbjct: 181 DGSVLWHGFVSDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLS 240

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           I+  DID+FK+IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   
Sbjct: 241 IIMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRGA 300

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +A  LA  LR+ +    I    G    +T S GIA     E I  ++ RAD  +Y AK++
Sbjct: 301 QAYQLALSLREELRKQVIE---GVDQVVTGSFGIASWREGEGIDAMLLRADSGVYAAKQA 357

Query: 251 GRNRV 255
           GR+RV
Sbjct: 358 GRDRV 362


>gi|218133232|ref|ZP_03462036.1| hypothetical protein BACPEC_01097 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992105|gb|EEC58109.1| hypothetical protein BACPEC_01097 [Bacteroides pectinophilus ATCC
           43243]
          Length = 352

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 111/229 (48%), Gaps = 19/229 (8%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKEL 93
           F IFI+  ++ A+       ++P Y G+E ++ E +         + L+G+ S   LKEL
Sbjct: 129 FVIFISCKVYSAD------DISPVYVGMESVIHEGMYTFNAFCVFTALIGF-SVIFLKEL 181

Query: 94  FISYNRI-------SQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQIN 143
             S++ I        +++++D L+GL N      F+           I   DID FK +N
Sbjct: 182 NRSHDEIIKVNEQLGRMAKLDTLTGLFNRRGIQPFLDICSVSGRNFCIAMCDIDDFKNVN 241

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D++GH VGD+VIA  +  +         V R GGEEF      +   +  I+A+++R+ I
Sbjct: 242 DSYGHDVGDEVIARTARTIRECIKPDDHVCRWGGEEFVFLVDSAQMHDGYIIADNIRRTI 301

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           E + + I  G  +  T++ GI E    E I   I RAD+ +Y  K+  +
Sbjct: 302 EQNPLEI-FGKIVDFTVTIGITEYKKGETIDQTIIRADEMMYSGKRMAK 349


>gi|116696148|ref|YP_841724.1| hypothetical protein H16_B2212 [Ralstonia eutropha H16]
 gi|113530647|emb|CAJ96994.1| conserved hypothetical protein [Ralstonia eutropha H16]
          Length = 417

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 104/200 (52%), Gaps = 18/200 (9%)

Query: 70  SLVIISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121
           S  +++  ++ LLG    +++  E  +++N     +R+D L+GLLN  A        ++ 
Sbjct: 196 SAWLLAPLMATLLGLFGFTVMAMEQIVAHNESG--ARVDALTGLLNRGALEMSALSLVAR 253

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                + LS +  DIDYFKQ+ND FGH  GD V+  ++  L          GR GGEEF 
Sbjct: 254 WQRDGQALSCLVIDIDYFKQVNDTFGHHAGDAVLREVAHALDNSRRASDVAGRYGGEEFC 313

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE----RCHKEPISTII 237
                + EQ+A+ LAN + + +   ++    G   H ++S G+A+       KE +  ++
Sbjct: 314 ILCPHTDEQQASALANRILRKVRAIELPAGRG---HASVSIGVAQLRGGPGSKEALWRLL 370

Query: 238 YR-ADQALYVAKKSGRNRVV 256
           +  AD+ALY AK+ GR+R V
Sbjct: 371 FADADRALYHAKEHGRDRYV 390


>gi|260901722|ref|ZP_05910117.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|28975404|gb|AAO61798.1| VbsG [Vibrio parahaemolyticus]
 gi|308108856|gb|EFO46396.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
          Length = 456

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 10/148 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL-----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GLLN   F  S   +  +L     S++  D D  K+IND +GH VGD+VI  ++D 
Sbjct: 308 DDLTGLLNRRVFKDS--EFKRRLKTAPYSVIAIDGDRIKRINDRYGHHVGDEVIEIIADA 365

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +  VF T  ++ R GG+EF A   G S  ++++LA  LR +++++++       I +++S
Sbjct: 366 MRKVFRTSDYLVRTGGDEFIAILPGCSISQSSMLAKKLRSVVKDNRLKT---LDIEVSVS 422

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKK 249
            G+A     E +  +I RAD+ LY  KK
Sbjct: 423 TGVAANESHESLQDVIVRADEDLYEMKK 450


>gi|260769458|ref|ZP_05878391.1| GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260614796|gb|EEX39982.1| GGDEF family protein [Vibrio furnissii CIP 102972]
          Length = 369

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 120/239 (50%), Gaps = 22/239 (9%)

Query: 41  TVIFIANIFLFYIGL-----TPFYGLEYILVENLSLVIISITISLLLGYISGSIL---KE 92
           +++FIA  F  + GL       +  +E  +   ++LV++ IT++L++ Y   S L   ++
Sbjct: 124 SLLFIAVQFAVFNGLILSNMQTWQPVEDNVASYINLVVVWITLALIIWYFEASRLHAYRK 183

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  +  ++ +L+  D L+G+ N       +        +   D+D FK +ND FGH  GD
Sbjct: 184 MNEANLKLEKLAMTDSLTGVFNRHYIERRIAHSTRPFHVAMIDVDNFKLVNDQFGHVAGD 243

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++D L   F     VGR GGEEF       S++       D+ ++ E ++  +++
Sbjct: 244 GVLKGIADVLKQSFANIGIVGRWGGEEFIVLLTEGSDE-------DIYRLTEQARAKVAA 296

Query: 213 GP---SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC---FSDIENNT 265
            P      ++IS G+A     +  +T + + D+ALY AK  G+NR+V    + DI++ +
Sbjct: 297 TPFGIQAAVSISIGLAHHDLGDYEAT-LRKVDKALYSAKSEGKNRIVSMLQYEDIQHKS 354


>gi|289208600|ref|YP_003460666.1| diguanylate cyclase with PAS/PAC and GAF sensors [Thioalkalivibrio
           sp. K90mix]
 gi|288944231|gb|ADC71930.1| diguanylate cyclase with PAS/PAC and GAF sensors [Thioalkalivibrio
           sp. K90mix]
          Length = 483

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 95/191 (49%), Gaps = 10/191 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSI 131
            + L+   I+G++ ++       +++ +R+D L+GL N   F   L           LS+
Sbjct: 289 ALRLVADMIAGTLARKQV--EQELARQARVDGLTGLANRREFDHQLERECAARRERSLSL 346

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQ 190
           +  DID+FK  ND FGH  GD  +  ++D +  +   P  VG R GGEEFA     ++ +
Sbjct: 347 LMIDIDHFKPYNDAFGHQAGDDCLRAVADVIRSILNRPADVGARYGGEEFACVLADTNPE 406

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAK 248
               +A  +R+ +    +         +TIS G+     + P+    ++ +AD+ALY AK
Sbjct: 407 GGLRVAERIREAVYGLDLKQPDTDEGRVTISIGVCSVHTRWPVEPRALLRQADEALYRAK 466

Query: 249 KSGRNRVVCFS 259
           ++GRNRV   +
Sbjct: 467 RAGRNRVEALT 477


>gi|146282566|ref|YP_001172719.1| sensory box/GGDEF family protein [Pseudomonas stutzeri A1501]
 gi|145570771|gb|ABP79877.1| sensory box/GGDEF family protein [Pseudomonas stutzeri A1501]
          Length = 294

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 88/174 (50%), Gaps = 9/174 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +LS  D L+GL N   +   L         Y+ + ++V FDID+FK IN
Sbjct: 118 RQLQAANAELQRLSSTDRLTGLYNRGHWEEMLRLDYARHRRYDSQAALVMFDIDHFKSIN 177

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGD VI  +++ +          GR GGEEF      + +Q A   A  LR  +
Sbjct: 178 DTYGHQVGDAVIQQVAELIRENLRDSDVAGRYGGEEFVVLLPDTDKQGALTFAERLRHAV 237

Query: 204 ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E+ +++      I  TIS G+A+        + +I  AD ALY +K +GRNRV 
Sbjct: 238 ESHEVH-HEQHRIRFTISLGVADLSVPSSSHAQLIEWADSALYASKAAGRNRVT 290


>gi|170020149|ref|YP_001725103.1| diguanylate cyclase [Escherichia coli ATCC 8739]
 gi|169755077|gb|ACA77776.1| diguanylate cyclase [Escherichia coli ATCC 8739]
          Length = 315

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 100/190 (52%), Gaps = 10/190 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129
           ++ I  I +S  +  I+ S++K++ +  +    L+++   SGL  + A  S      + L
Sbjct: 120 TMAICPIMVSFSVAAIN-SLMKQVALRAD-FDFLTQVYSRSGL--YEALKSPSLKQTQHL 175

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DIDYFK INDN+GH  GDKV++  +  +  + G    V R+GGEEFA A    + 
Sbjct: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNH 235

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQAL 244
            +  ++A  +RK +E          ++++T+S G+       R   +  + ++  AD  L
Sbjct: 236 VDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSIGVGSGRASYRTLTDDFNKLMVEADTCL 294

Query: 245 YVAKKSGRNR 254
           Y +KK GRNR
Sbjct: 295 YRSKKDGRNR 304


>gi|332343204|gb|AEE56538.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 472

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK +NDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSLNDNYGHECGDKVLSVFARHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254
           G+       R   +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|30063075|ref|NP_837246.1| hypothetical protein S1698 [Shigella flexneri 2a str. 2457T]
 gi|56479928|ref|NP_707452.2| hypothetical protein SF1571 [Shigella flexneri 2a str. 301]
 gi|30041324|gb|AAP17053.1| hypothetical protein S1698 [Shigella flexneri 2a str. 2457T]
 gi|56383479|gb|AAN43159.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|313649096|gb|EFS13531.1| uncharacterized protein yneF [Shigella flexneri 2a str. 2457T]
 gi|332767291|gb|EGJ97486.1| diguanylate cyclase domain protein [Shigella flexneri 2930-71]
          Length = 315

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 151 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 208

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 209 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSI 267

Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254
           G+       R   +  + ++  AD  LY +KK GRNR
Sbjct: 268 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 304


>gi|15801615|ref|NP_287632.1| hypothetical protein Z2182 [Escherichia coli O157:H7 EDL933]
 gi|15831383|ref|NP_310156.1| hypothetical protein ECs2129 [Escherichia coli O157:H7 str. Sakai]
 gi|254161574|ref|YP_003044682.1| putative diguanylate cyclase [Escherichia coli B str. REL606]
 gi|254793068|ref|YP_003077905.1| putative diguanylate cyclase [Escherichia coli O157:H7 str.
           TW14359]
 gi|312971715|ref|ZP_07785890.1| uncharacterized protein yneF [Escherichia coli 1827-70]
 gi|20140987|sp|Q8XAZ4|YNEF_ECO57 RecName: Full=Uncharacterized protein yneF
 gi|12515141|gb|AAG56244.1|AE005352_10 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13361595|dbj|BAB35552.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|209770328|gb|ACI83476.1| hypothetical protein ECs2129 [Escherichia coli]
 gi|209770330|gb|ACI83477.1| hypothetical protein ECs2129 [Escherichia coli]
 gi|209770332|gb|ACI83478.1| hypothetical protein ECs2129 [Escherichia coli]
 gi|209770336|gb|ACI83480.1| hypothetical protein ECs2129 [Escherichia coli]
 gi|242377266|emb|CAQ32007.1| predicted diguanylate cyclase [Escherichia coli BL21(DE3)]
 gi|253973475|gb|ACT39146.1| predicted diguanylate cyclase [Escherichia coli B str. REL606]
 gi|253977686|gb|ACT43356.1| predicted diguanylate cyclase [Escherichia coli BL21(DE3)]
 gi|254592468|gb|ACT71829.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str.
           TW14359]
 gi|310336312|gb|EFQ01512.1| uncharacterized protein yneF [Escherichia coli 1827-70]
 gi|315060798|gb|ADT75125.1| predicted diguanylate cyclase [Escherichia coli W]
          Length = 315

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 100/190 (52%), Gaps = 10/190 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129
           ++ I  I +S  +  I+ S++K++ +  +    L+++   SGL  + A  S      + L
Sbjct: 120 TMAICPIMVSFSVAAIN-SLMKQVALRAD-FDFLTQVYSRSGL--YEALKSPSLKQTQHL 175

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DIDYFK INDN+GH  GDKV++  +  +  + G    V R+GGEEFA A    + 
Sbjct: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQAL 244
            +  ++A  +RK +E          ++++T+S G+       R   +  + ++  AD  L
Sbjct: 236 VDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSIGVGSGRASYRTLTDDFNKLMVEADTCL 294

Query: 245 YVAKKSGRNR 254
           Y +KK GRNR
Sbjct: 295 YRSKKDGRNR 304


>gi|332341747|gb|AEE55081.1| diguanylate cyclase AdrA [Escherichia coli UMNK88]
          Length = 371

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 25/200 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTP-AESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRN 253
           R     AD ALY AKK+GRN
Sbjct: 346 REWLKSADLALYKAKKAGRN 365


>gi|284043232|ref|YP_003393572.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
 gi|283947453|gb|ADB50197.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
          Length = 769

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 6/163 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL----SIVFFDIDYFKQINDNFGHPVGDK 153
            +++ L+  D L+GL N  AF   L     +     ++V  D+D+FK IND  GH  GD+
Sbjct: 326 GQLAYLADHDALTGLYNRRAFQRELEQRTSEDGRGGAVVVIDLDHFKDINDTLGHAAGDE 385

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           VI  ++  L         +GRLGG+EFA    G S +EA  +  +L +++    + +  G
Sbjct: 386 VIVRVARLLAKRLRKTDVLGRLGGDEFATLLSGVSREEAEAVIAELLRVVREQSVVVEGG 445

Query: 214 PSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNR 254
             I +T SAGIA      P+S   ++  AD A+Y AK++GR+R
Sbjct: 446 HPIGLTASAGIALFEGDTPLSGEELLVSADIAMYDAKEAGRDR 488


>gi|207721428|ref|YP_002251869.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           MolK2]
 gi|206586587|emb|CAQ17174.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           MolK2]
          Length = 534

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 9/155 (5%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+L    F++   +         E L +V  D+D+FK+IND +GH VGD  +   +
Sbjct: 378 DHLTGVLTRRRFLALFETVLTRAHVRGESLVLVLADLDHFKRINDTWGHAVGDLALQRFA 437

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
                V  +   +GRLGGEEFA     ++ ++AA +   LR I+  +  ++ SG  + +T
Sbjct: 438 SLATGVMRSSDLIGRLGGEEFAVVMSSTTLEDAAGVVERLRAIVAEADDSLPSG--LTMT 495

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +S G+      +  S ++ RAD ALY AK+SGRNR
Sbjct: 496 VSLGMTACRSGDTASEMLRRADLALYRAKESGRNR 530


>gi|147678062|ref|YP_001212277.1| signaling protein [Pelotomaculum thermopropionicum SI]
 gi|146274159|dbj|BAF59908.1| hypothetical signaling protein [Pelotomaculum thermopropionicum SI]
          Length = 343

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 88/182 (48%), Gaps = 15/182 (8%)

Query: 88  SILKELFISYN-RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
           S+ KE     N R+  LS  D L+G  N    IS L         +   LS++  DID+F
Sbjct: 155 SVQKEELARVNSRLELLSITDPLTGAYNRRYIISQLEQELAVAARHGLPLSLIMIDIDHF 214

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND  GH VGD+V+  +   L     T   +GR GGEEF   A  +  QEA +LA  L
Sbjct: 215 KKVNDTHGHQVGDEVLKDVVKVLSGCIRTADVLGRYGGEEFVVIAPFTGFQEALVLAERL 274

Query: 200 RKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRN 253
           R  +       + G  + +TIS G+       E  H   I  ++ RAD+ +Y AK  GRN
Sbjct: 275 RDTVSRWPFETTYG-FLKLTISLGVTTFNGKEEHYHNSLIDRLLARADEEMYKAKAQGRN 333

Query: 254 RV 255
            V
Sbjct: 334 LV 335


>gi|150017915|ref|YP_001310169.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052]
 gi|149904380|gb|ABR35213.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052]
          Length = 372

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/130 (40%), Positives = 77/130 (59%), Gaps = 3/130 (2%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ-LVVVFGTPMFVGRLGGEEFAAAALGS 187
           LSI+  DID+FK++ND +GH +GDK++   SD  L  V G   +VGR GGEEF      +
Sbjct: 164 LSIIMADIDFFKKVNDQYGHIIGDKILIDFSDLILKSVRGKSDWVGRFGGEEFIIILNYT 223

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYV 246
             + A  +A  +RK++EN+  N   G  I IT S G+ E   ++  I  ++ + D+ LY 
Sbjct: 224 EAKNAYKVAEKIRKVLENTSFNY-DGIEIKITASFGVYEASDEDVNIYDLLSKVDKNLYK 282

Query: 247 AKKSGRNRVV 256
           AK SGRNR +
Sbjct: 283 AKASGRNRTI 292


>gi|323947889|gb|EGB43885.1| GGDEF domain-containing protein [Escherichia coli H120]
          Length = 315

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 100/190 (52%), Gaps = 10/190 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129
           ++ I  I +S  +  I+ S++K++ +  +    L+++   SGL  + A  S      + L
Sbjct: 120 TMAICPIMVSFSVAAIN-SLMKQVALRAD-FDFLTQVYSRSGL--YEALKSPSLKQTQHL 175

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DIDYFK INDN+GH  GDKV++  +  +  + G    V R+GGEEFA A    + 
Sbjct: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQAL 244
            +  ++A  +RK +E          ++++T+S G+       R   +  + ++  AD  L
Sbjct: 236 VDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSIGVGSGRASYRTLTDDFNKLMVEADTCL 294

Query: 245 YVAKKSGRNR 254
           Y +KK GRNR
Sbjct: 295 YRSKKDGRNR 304


>gi|254224741|ref|ZP_04918357.1| GGDEF family protein [Vibrio cholerae V51]
 gi|125622804|gb|EAZ51122.1| GGDEF family protein [Vibrio cholerae V51]
          Length = 339

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D LSGL N  AF   I +L    +++S++  DID+FK +NDN+GH  GD++I  ++ +L 
Sbjct: 183 DSLSGLYNRRAFDGDIFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAIAKRLQ 242

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221
            +    +   R GGEEFA  A   S + A   A  +R+ IE   + +  +G S+  IT S
Sbjct: 243 SLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRNGQSVGSITAS 302

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ E+   + + ++I RAD  LY AK  GRNRV+
Sbjct: 303 FGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 337


>gi|153802754|ref|ZP_01957340.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|229528298|ref|ZP_04417689.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|262191575|ref|ZP_06049756.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
 gi|124121711|gb|EAY40454.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|229334660|gb|EEO00146.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|262032540|gb|EEY51097.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
 gi|327485844|gb|AEA80250.1| GGDEF family protein [Vibrio cholerae LMA3894-4]
          Length = 326

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 92/183 (50%), Gaps = 15/183 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLN---------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142
           +++ +Y  I   S  D L+GLLN         H+  I+     N KL I   DID+FK I
Sbjct: 132 KIYRNYTVILHESERDKLTGLLNRRTLEDRLRHTFAINPSTEENHKLWIAMLDIDHFKAI 191

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+FGH +GD+++   + Q+   FG    + R GGEEF       +E +     +  R+ 
Sbjct: 192 NDHFGHMIGDEILLMFAQQMQHYFGPSSQLFRFGGEEFVIIFSSGNEPQIKQQLDGFRQ- 250

Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
               QI   + P I  ++ SAG       + + TI+  AD+ALY AK+ GRN+V C+  +
Sbjct: 251 ----QIRRHNFPRIGELSFSAGFCSLRPGDYLPTILDHADKALYYAKEHGRNQVHCYEQL 306

Query: 262 ENN 264
             N
Sbjct: 307 CEN 309


>gi|32471379|ref|NP_864372.1| hypothetical protein RB1357 [Rhodopirellula baltica SH 1]
 gi|32443220|emb|CAD72051.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
          Length = 322

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 81/159 (50%), Gaps = 9/159 (5%)

Query: 104 SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GL N  AF   L        +  +  +++  DID+FK IND  GHP+GD V+ 
Sbjct: 147 ARTDGLTGLFNRRAFDKKLDELFSAYRAGGKSFTLILMDIDHFKMINDTHGHPIGDIVLQ 206

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +S +L         V R GGEEFA        + AA   N LR  I N  ++  S   +
Sbjct: 207 QISQRLGHGMQDAEIVSRFGGEEFAILTH-LPIRAAADKINKLRDRIANDPVDAGSA-EL 264

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +T+S G++       I  I+ RAD+ALY AK  GRNRV
Sbjct: 265 QVTLSVGLSTPHEDLVIGPIVRRADEALYSAKNMGRNRV 303


>gi|291613091|ref|YP_003523248.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1]
 gi|291583203|gb|ADE10861.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1]
          Length = 553

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 91/181 (50%), Gaps = 20/181 (11%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           ++EL     +IS+L R D L+G LN      +L    ++       +S+   DID FKQ+
Sbjct: 378 IRELENELEQISELVREDQLTGALNRRGLDETLDRELKRSDRSKTPVSVALLDIDNFKQL 437

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILAND 198
           ND+ GH  GD+ +  L+  +         VGR GGEEF        L ++ +    L  D
Sbjct: 438 NDSLGHLAGDRALIHLTKVIKETLRPADTVGRYGGEEFLIVLPDTGLKAAVEAMQRLQRD 497

Query: 199 LRK--IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           L K   + N++        I +T SAG+A R   E    +I RAD+A+Y AK++G+NRV+
Sbjct: 498 LTKKFFLHNNE-------RILVTFSAGVALRGEDEEAEDLIGRADKAMYQAKQAGKNRVM 550

Query: 257 C 257
            
Sbjct: 551 T 551


>gi|238023756|ref|YP_002907988.1| diguanylate cyclase [Burkholderia glumae BGR1]
 gi|237878421|gb|ACR30753.1| Diguanylate cyclase [Burkholderia glumae BGR1]
          Length = 397

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 9/165 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +L+ ID L+GLL   AFI+       S  +   +LS+V  DID FK+IND +GH  G
Sbjct: 213 RMERLATIDELTGLLGRRAFIARAEALLDSARAAQSQLSVVILDIDDFKRINDCYGHAAG 272

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+ +A ++  +         +GR+GGEEF A  + +  +EAA L N LR ++  S  ++ 
Sbjct: 273 DQTLAHVALTIARETRHGDLLGRIGGEEF-ALLMRTGREEAARLTNRLRALVAASAASVP 331

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G ++  T SAG+ +    + +++ + RAD ALY AK +GRN V+
Sbjct: 332 GG-NLACTFSAGVEQIGAGDTLASAMARADGALYAAKANGRNCVM 375


>gi|218885597|ref|YP_002434918.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756551|gb|ACL07450.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 356

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 93/187 (49%), Gaps = 30/187 (16%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL--GSYNEK----LSIVFFDIDYFKQINDNFGHPVGD 152
           R+ +L+  D L+GL N  AF ++L  G    K    L++V FD+D FK+IND  GH +GD
Sbjct: 163 RVGELTVTDPLTGLGNRRAFDTALTAGEAAWKGGTALALVLFDVDRFKRINDQHGHRIGD 222

Query: 153 KVIAF---------------LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +V+                 L+D+          V R GGEEFA    G   Q A  +A 
Sbjct: 223 QVLRTVAEVLRRKVDDCNRSLNDEAEGAGECASVVARFGGEEFALVLTGEGAQRAGEIAE 282

Query: 198 DLRKIIENSQINISSGP------SIHITISAGI--AERCHKEPISTIIYR-ADQALYVAK 248
            +R  +E+    I  G        + +T+SAG+  A     EP++  ++  AD+ALY AK
Sbjct: 283 SVRAGLESVNFAIRDGQGHVVEHGVRVTLSAGVAHARPGMPEPLTDALFDLADKALYEAK 342

Query: 249 KSGRNRV 255
           + GRNRV
Sbjct: 343 REGRNRV 349


>gi|239617412|ref|YP_002940734.1| diguanylate cyclase with GAF sensor [Kosmotoga olearia TBF 19.5.1]
 gi|239506243|gb|ACR79730.1| diguanylate cyclase with GAF sensor [Kosmotoga olearia TBF 19.5.1]
          Length = 577

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 97/183 (53%), Gaps = 12/183 (6%)

Query: 81  LLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFF 134
           +L  I+  IL+  E    +  I   S+ D  +GL  H+ F S L     S  ++ SI+  
Sbjct: 396 MLEIIADQILRVIEDSTRFREILMASKTDLATGLYTHTEFYSVLEKLIKSKEKRFSIIMI 455

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK+IND +GH VGD+VI  ++  +           R GG+EFA  A+ +S+ +A  
Sbjct: 456 DLDNFKEINDTYGHVVGDQVIEKIARVIRKNLRKKDIGARYGGDEFAVIAMDASKADAMN 515

Query: 195 LANDLRKIIENSQINISSGP-SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252
           +A  + K I      IS G   + +T S GIA      E  S ++ +AD+ALY AKK+G+
Sbjct: 516 IAKRISKEIR----EISVGQIKMRVTCSMGIASYPFDGESASDLVEKADRALYAAKKAGK 571

Query: 253 NRV 255
           N++
Sbjct: 572 NKI 574


>gi|315500124|ref|YP_004088927.1| response regulator receiver modulated diguanylate cyclase
           [Asticcacaulis excentricus CB 48]
 gi|315418136|gb|ADU14776.1| response regulator receiver modulated diguanylate cyclase
           [Asticcacaulis excentricus CB 48]
          Length = 454

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 19/198 (9%)

Query: 75  SITISLLLGYISGSILKELFISYNRIS-----QLSRIDCLSGLLNH-------SAFISSL 122
            + I  LL    G I ++ +  + R S     +L+  D L+GL N        +  +   
Sbjct: 256 PVDIQELLARARGQIRRKRYADFLRASLDRSLELAVTDPLTGLNNRRFMDLQLTQLMRRH 315

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI---AFLSDQLVVVFGTPMFVGRLGGEE 179
              ++ +S++  DID+FK++ND FGH  GD+V+   A    Q V     P    RLGGEE
Sbjct: 316 LKTDDPVSLLLLDIDHFKRVNDGFGHDAGDEVLKEFARRVSQNVRAIDMPC---RLGGEE 372

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIY 238
           F      +    A  +A  +R+ +  +  ++  G ++ +T+S G++      + +   I 
Sbjct: 373 FVVLMPDTPADAAQTIAERVRQAVAEAPFSLPDGRTLDVTVSVGVSSLLGLGDTLEAFIK 432

Query: 239 RADQALYVAKKSGRNRVV 256
           RAD+A+Y AK+SGRNRV+
Sbjct: 433 RADEAVYEAKQSGRNRVI 450


>gi|90020041|ref|YP_525868.1| diguanylate cyclase [Saccharophagus degradans 2-40]
 gi|89949641|gb|ABD79656.1| diguanylate cyclase [Saccharophagus degradans 2-40]
          Length = 319

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 87/169 (51%), Gaps = 9/169 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ ++SR D L+GLLN   +             +    S+V FDID+FK IND++GHP G
Sbjct: 151 QLHEISRTDGLTGLLNRKTWELDAEQEYKRFKRHEHPCSLVMFDIDHFKNINDSYGHPAG 210

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+VI   +  +          GR GGEEF      +  + A ++A  +R  I+   ++  
Sbjct: 211 DEVIRQTAAAVKSCIRDIDIAGRYGGEEFTIVLSDTDTEGALVVAERIRNQIQELTVHYE 270

Query: 212 SGPSIHITISAGIAERCHKEPISTI-IYRADQALYVAKKSGRNRVVCFS 259
              +I  T+S G+A+   +    T  I  AD+ALY AKK+GRN  V ++
Sbjct: 271 DF-AIQFTVSLGVAQLTQQMTNRTAWIDCADKALYQAKKNGRNNSVVYT 318


>gi|303249358|ref|ZP_07335586.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
 gi|302489233|gb|EFL49195.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
          Length = 403

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 11/165 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++L+  D L+G  N   F       +  L  Y    S++ FDID+FK +ND  GH  GD
Sbjct: 239 LTELAVTDQLTGAYNRLKFNQVMGHELKRLDRYGPPFSVIMFDIDHFKIVNDTHGHAAGD 298

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++  LS ++ +      ++ R GGEEF  AA  +   +A +LA  LR ++ ++      
Sbjct: 299 AMLRELSRRVSMAVRGVDWLFRYGGEEFVVAAPHTDLDQARVLAEKLRNLVADTPF---- 354

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              I  TIS G+A+    +   +++ R D ALY AK +GRNRVV 
Sbjct: 355 PHDIPGTISLGVAQAHPGDTPESLMQRVDAALYEAKDTGRNRVVV 399


>gi|323163380|gb|EFZ49207.1| hypothetical protein ECE128010_0457 [Escherichia coli E128010]
          Length = 315

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 100/190 (52%), Gaps = 10/190 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129
           ++ I  I +S  +  I+ S++K++ +  +    L+++   SGL  + A  S      + L
Sbjct: 120 TMAICPIMVSFSVAAIN-SLMKQVALRAD-FDFLTQVYSRSGL--YEALKSPSLKQTQHL 175

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DIDYFK INDN+GH  GDKV++  +  +  + G    V R+GGEEFA A    + 
Sbjct: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQAL 244
            +  ++A  +RK +E          ++++T+S G+       R   +  + ++  AD  L
Sbjct: 236 VDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSIGVGSGRESYRTLTDDFNKLMVEADTCL 294

Query: 245 YVAKKSGRNR 254
           Y +KK GRNR
Sbjct: 295 YRSKKDGRNR 304


>gi|239907502|ref|YP_002954243.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239797368|dbj|BAH76357.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 300

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 83/163 (50%), Gaps = 11/163 (6%)

Query: 100 ISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++LS  D L+GL N         A +  LG    +LS++ FDID+FK +ND +GH  GD
Sbjct: 139 LARLSTTDMLTGLANRQHTEHLLLAGLGELGRQGRQLSLIMFDIDHFKAVNDRYGHLRGD 198

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  L+D L       + VGR GGEEF     G    EA +LA  LR  +    +    
Sbjct: 199 DVLRALADLLRQTVPAGLGVGRWGGEEFLICCSGLGLAEACVLAEKLRLAVAGLDLTGVG 258

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                +T S G+AE    E   T++ R D ALY AK  GR+RV
Sbjct: 259 ----RLTCSFGVAEARAGESAVTLLARVDNALYAAKGLGRDRV 297


>gi|222148531|ref|YP_002549488.1| GGDEF protein [Agrobacterium vitis S4]
 gi|221735517|gb|ACM36480.1| GGDEF protein [Agrobacterium vitis S4]
          Length = 334

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 94/177 (53%), Gaps = 18/177 (10%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKL---SIVFFDIDYFKQ 141
           ++ +EL   Y RI+     D L+ L N  AF   ++ L +Y   L   S++  DID+FK+
Sbjct: 143 AVRREL-DEYKRIAN---TDSLTRLANRRAFDERMAGLFNYPSTLTATSLMLIDIDHFKK 198

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGHPVGDK++A ++  +        FV R GGEEFA    G  + E   L   +R 
Sbjct: 199 INDTFGHPVGDKILATVAGVIRANAPRDAFVARAGGEEFAIIVEGMPDTEVFGLCERIRT 258

Query: 202 IIE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +E     NS+  ++ GP   +T+S G A   + +    +  R+D ALY AK +GRN
Sbjct: 259 NLENTLFRNSRTGVNYGP---VTVSIGFALAANCQDPGELYSRSDIALYCAKNAGRN 312


>gi|221210503|ref|ZP_03583483.1| diguanylate cyclase [Burkholderia multivorans CGD1]
 gi|221169459|gb|EEE01926.1| diguanylate cyclase [Burkholderia multivorans CGD1]
          Length = 312

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 96/181 (53%), Gaps = 13/181 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           + +E   +  ++ + +  D L+G+ N   F + LG        Y   LS++ FD+D+FK 
Sbjct: 135 MQREREEAVAKLREHANRDGLTGIANRRYFETRLGEEFARWQRYGGDLSMLLFDLDHFKA 194

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH VGD V+   + ++  +       GR GGEEFA     ++  EA  +A+ +R 
Sbjct: 195 INDRFGHAVGDAVLRETARRVAAIVRAQDTFGRFGGEEFALLLPCTNLDEALQVADKVRD 254

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK--EP-ISTIIYRADQALYVAKKSGRNRVVCF 258
            I  + ++ + G S+ +T S G A  C K  +P    ++  AD ALY AK+ GR+R V +
Sbjct: 255 AIGRTPVD-AEGVSVAVTASVGAA--CAKLGQPACDALVNDADAALYRAKRLGRDRSVGY 311

Query: 259 S 259
           +
Sbjct: 312 A 312


>gi|207742592|ref|YP_002258984.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           IPO1609]
 gi|206593986|emb|CAQ60913.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           IPO1609]
          Length = 534

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 9/155 (5%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+L    F++   +         E L +V  D+D+FK+IND +GH VGD  +   +
Sbjct: 378 DHLTGVLTRRRFLALFETVLTRAHVRGESLVLVLADLDHFKRINDTWGHAVGDLALQRFA 437

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
                V  +   +GRLGGEEFA     ++ ++AA +   LR I+  +  ++ SG  + +T
Sbjct: 438 SLATGVMRSSDLIGRLGGEEFAVVMSSTTLEDAAGVVERLRAIVAEADDSLPSG--LTMT 495

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +S G+      +  S ++ RAD ALY AK+SGRNR
Sbjct: 496 VSLGMTACRSGDTASEMLRRADLALYRAKESGRNR 530


>gi|153827329|ref|ZP_01979996.1| ggdef family protein [Vibrio cholerae MZO-2]
 gi|149738749|gb|EDM53091.1| ggdef family protein [Vibrio cholerae MZO-2]
          Length = 461

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
           ++L  +  ++S L++ D L+ + N  +F   L +   +   L+++ FDID FK IND FG
Sbjct: 289 QQLEEANQKLSYLAKTDSLTDIANRRSFFEYLEAEQARSGSLTLMVFDIDDFKTINDRFG 348

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD  I F+   +     +  +  R+GGEEFA  A G + +E+  LA  + + +   +
Sbjct: 349 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 408

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             +++  S+ +TIS G A   H   P S  ++ AD  +Y  K++G+N+VV
Sbjct: 409 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 456


>gi|24215632|ref|NP_713113.1| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
 gi|45657009|ref|YP_001095.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24196791|gb|AAN50131.1| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
 gi|45600246|gb|AAS69732.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 320

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 103/221 (46%), Gaps = 50/221 (22%)

Query: 84  YISGSILKELFISYNRISQLSR--------------IDCLSGLLNHSAFISS------LG 123
           Y++G  + ++  S  +IS+L+                D L+ L N  +F         LG
Sbjct: 108 YVTGRDITDIIESNQKISKLASDLEEANNKLLEQASTDPLTKLKNRRSFNEEINHLIRLG 167

Query: 124 SYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
            + EK +S++  D+D+FK  ND FGHP GD+++  L++       +   V R GGEEF  
Sbjct: 168 QHQEKSISLMMIDVDHFKDYNDKFGHPAGDRILIRLAEVFTETLRSCDLVARFGGEEFVV 227

Query: 183 AALGSSEQEAA-----ILANDLRKIIENSQINISSG----------PSIHITISAGIAER 227
           A   ++E++A      ++AN  +K  ENS I IS G          P  H  +S G    
Sbjct: 228 ALSDTNEEKAVEVAERLMANVKKKSWENSPITISVGITTLNFNGPVPIYHTDLSTG---- 283

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI--ENNTC 266
                   II  AD+ALY +K +GRN+    S +  EN T 
Sbjct: 284 --------IIEDADRALYRSKANGRNQATHSSQLKTENQTS 316


>gi|325108730|ref|YP_004269798.1| diguanylate cyclase with GAF sensor [Planctomyces brasiliensis DSM
           5305]
 gi|324968998|gb|ADY59776.1| diguanylate cyclase with GAF sensor [Planctomyces brasiliensis DSM
           5305]
          Length = 584

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 18/164 (10%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N  +F   +    E+        S+  FD+D+FK IND +GH  GD+V+   +
Sbjct: 405 DGLTNLANRRSFDKRIQKEVEQARHTGTECSLCLFDLDHFKSINDTYGHLAGDEVLKQFA 464

Query: 160 DQLVV----VFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
             L+     V GT +  V R GGEE A    G ++Q A  ++  +R+ IE + + +  G 
Sbjct: 465 RLLITQSQHVRGTDVPLVARYGGEEMAILLPGVNQQGAMRISEAIRRSIERTSV-LYQGR 523

Query: 215 SIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRV 255
           SI +++S GIA  C   H + + ++I  AD+ALY AK++GRN V
Sbjct: 524 SIRVSVSVGIA--CFPRHAQTVESLIRAADKALYAAKRAGRNTV 565


>gi|309790983|ref|ZP_07685523.1| diguanylate cyclase [Oscillochloris trichoides DG6]
 gi|308226956|gb|EFO80644.1| diguanylate cyclase [Oscillochloris trichoides DG6]
          Length = 382

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 101/196 (51%), Gaps = 20/196 (10%)

Query: 76  ITISLLLGYI-----SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125
           +  S+LLG++         ++ L + YN + +++  D L+ L N S    +L        
Sbjct: 178 VAASMLLGFLFILARYRDHIQRLQVEYNLLERVAFTDMLTQLPNRSMGHQTLQRQIALCQ 237

Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                LS+  +DID+FK INDN+GH VGD+V+  ++ +LV        + R GGEEF   
Sbjct: 238 RNAMPLSVSIWDIDHFKLINDNYGHDVGDQVLRAIATRLVEELRLSDMLVRWGGEEFLLI 297

Query: 184 ALGSSEQEAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
              ++   A ++   LR+++    I  N+S      +T S G++   H + +  ++ RAD
Sbjct: 298 LPNTTLSSALLVIERLRQVLSKQPIINNLS------VTASFGVSCYHHSDTLEQLLQRAD 351

Query: 242 QALYVAKKSGRNRVVC 257
            A+Y+AK  GRNRVV 
Sbjct: 352 AAMYLAKAQGRNRVVA 367


>gi|283856456|ref|YP_163100.2| diguanylate cyclase with beta propeller sensor [Zymomonas mobilis
            subsp. mobilis ZM4]
 gi|283775460|gb|AAV89989.2| diguanylate cyclase with beta propeller sensor [Zymomonas mobilis
            subsp. mobilis ZM4]
          Length = 1045

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 17/175 (9%)

Query: 92   ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
            EL  +  ++S+L+  D L+GLLN  A ++ L   ++        +SI   D+D+FK+IND
Sbjct: 875  ELQQANKQLSELANTDVLTGLLNRRALMAKLSELHQDALLNENAISIAMLDVDHFKKIND 934

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF---AAAALGSSEQEAAILANDLRK 201
             +GH VGD V+   +  +        F GR GG+EF    +A++  S   A  + N+  K
Sbjct: 935  RYGHLVGDDVMRNAASIIRNNIRQEDFAGRYGGDEFIIAISASIEMSRHIAERIRNEFTK 994

Query: 202  IIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I+      I +G + + IT+S G+ E   +E IS  + +AD  LY AK +GRNRV
Sbjct: 995  IV------IKNGETELKITVSIGLFEITTEESISIALDKADSLLYWAKNNGRNRV 1043


>gi|312970479|ref|ZP_07784660.1| diguanylate cyclase domain protein [Escherichia coli 1827-70]
 gi|310337128|gb|EFQ02266.1| diguanylate cyclase domain protein [Escherichia coli 1827-70]
          Length = 371

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 105/202 (51%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G A      P++  +  Y
Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGGA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AKK+GRNR 
Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367


>gi|220905592|ref|YP_002480904.1| PAS/PAC sensor-containing diguanylate cyclase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869891|gb|ACL50226.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 324

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 87/173 (50%), Gaps = 9/173 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQIN 143
           S L  +     +  + S  D L+GL         LG Y     +    +  D+D+FKQIN
Sbjct: 138 SQLDSMITRVRQADESSLTDALTGLYTRKYLDMVLGRYTRLEKKPFCCIMLDVDHFKQIN 197

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+FGH VGD V+  ++  +         V R GGEEF     GS  ++A   A  +R+ +
Sbjct: 198 DSFGHLVGDSVLKDVAQVIRRCVREMDTVCRYGGEEFVVLMPGSLLEQAEQAAERIRRAV 257

Query: 204 ENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                 + SGP S  +T+S G +E    E    +++RAD+ALY AK+SGRNRV
Sbjct: 258 SG----MISGPDSRPVTVSLGCSEYEMDEDALQVLHRADKALYGAKRSGRNRV 306


>gi|77456851|ref|YP_346356.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas fluorescens Pf0-1]
 gi|77380854|gb|ABA72367.1| putative GGDEF domain response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 556

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 12/163 (7%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +  L          N+ LS    DID+FK++ND+ GHP+GD+VI  L+
Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRARRENKPLSFAMLDIDHFKRVNDSHGHPMGDRVIKSLA 438

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L        F+GR GGEEFA     +  + A  + +++R+    ++I+  + P  +  
Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIEAAHKVLDEIRQRF--AEIHYPAQPQDLWC 496

Query: 219 TISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSD 260
           T SAG+ E  H +  S ++  +AD+ALY AK  GRNRV    D
Sbjct: 497 TFSAGVVE-MHDDSDSLMMASQADEALYRAKGEGRNRVQTARD 538


>gi|191165177|ref|ZP_03027021.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B7A]
 gi|190904949|gb|EDV64654.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B7A]
          Length = 472

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFALHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254
           G+       R   +  + ++  AD  LY +KK GRNR
Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461


>gi|253688995|ref|YP_003018185.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251755573|gb|ACT13649.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 471

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 72/127 (56%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LSI   DID+FK +ND +GH  GD ++  +++ L        +V R GGEEF    + + 
Sbjct: 339 LSIAMIDIDHFKTVNDTYGHAAGDNILKRIAEVLYESTRNSDYVFRYGGEEFMIVLIETP 398

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +  A  +   LRK I++  I++ +G SI +TISAGIA          +I  AD ALY AK
Sbjct: 399 KVAAHTIIERLRKKIQDHPIHLQNGESITMTISAGIAVYSGHPDYECLIKAADDALYQAK 458

Query: 249 KSGRNRV 255
            +GRNR+
Sbjct: 459 ANGRNRI 465


>gi|169634781|ref|YP_001708517.1| GGDEF domain-containing protein [Acinetobacter baumannii SDF]
 gi|169153573|emb|CAP02748.1| putative membrane protein with GGDEF domain [Acinetobacter
           baumannii]
          Length = 397

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 88/167 (52%), Gaps = 3/167 (1%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           I +LS+ID L+ +LN  +  + L + +E+    +++  DID+FK+IND +GH  GD+V+ 
Sbjct: 227 IQRLSQIDPLTNVLNRRSLNTHLEALHEQQFDYAVILLDIDHFKKINDIYGHHQGDQVLI 286

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++  L         +GR GGEEF      +   +A  +A   R+ ++   I  +    I
Sbjct: 287 EIARCLSENLRNEDIIGRFGGEEFILLLPHTDILQAEKIAERCRQALQELTIFNNQNIQI 346

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           H++ S GI+          +I +ADQALY  K SGRN+V  F  +  
Sbjct: 347 HVSASFGISSSAFANDPYLVIRQADQALYAVKASGRNKVRTFHQLPQ 393


>gi|262171390|ref|ZP_06039068.1| GGDEF domain protein [Vibrio mimicus MB-451]
 gi|261892466|gb|EEY38452.1| GGDEF domain protein [Vibrio mimicus MB-451]
          Length = 352

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 118/265 (44%), Gaps = 30/265 (11%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           +W C       F P  F I+ S  F+   +++  I              G+ Y  ++N  
Sbjct: 98  VWSC-------FVPILFYIFTSARFAFLTSSLFLILQ-----------SGIVYWQLQNEP 139

Query: 71  LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSY 125
           L+  S+ + L   YI   ++  ++    R     +  L+  D L+   N  +  +S   +
Sbjct: 140 LISWSVLLHLSFAYIGIWVVSHVYDQNRRKIENSLLYLASRDPLTSAHNRLSLTTSFQHF 199

Query: 126 NE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            +      LS++  D+D+FK IND FGH  GDKV+   +  L  V G      R+GGEEF
Sbjct: 200 EQFNDQTTLSLLVIDLDFFKSINDQFGHDTGDKVLIETTRLLAQVVGDNNLY-RIGGEEF 258

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                  S ++A  +   LR II +  I       + +TIS G+ E    + ++ ++  A
Sbjct: 259 CVTLFDQSLEQAERVCERLRAII-SQHIFAFGDKRVQVTISIGVCEYQPGDQLNDLLKFA 317

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D  LY AKK+GRN+V  F   +  T
Sbjct: 318 DIELYRAKKAGRNQVRLFKHAQTQT 342


>gi|152991339|ref|YP_001357061.1| hypothetical protein NIS_1598 [Nitratiruptor sp. SB155-2]
 gi|151423200|dbj|BAF70704.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 590

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 91/178 (51%), Gaps = 13/178 (7%)

Query: 96  SYNRISQLSRI---DCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           +Y  + +L  I   D L+G+ N +        I  +   +E L +   DID+FK+IND F
Sbjct: 416 TYRSMEELQEIAYKDPLTGVYNRTLLQDIIHNILRIKRKDEHLILALVDIDHFKKINDEF 475

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+V+ F++  +     +  +V R+GGEEF       S ++  ++   +R+   + 
Sbjct: 476 GHDTGDEVLQFVAQTIKKRLRSEDYVFRIGGEEFLIVMKTRSIEKVLLILQSIRRYFASH 535

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
                  P   +TIS G+ E    E       RAD+ALY AK+SGRNR++ +  +E++
Sbjct: 536 PAQKLKKP---VTISIGVTEYKPYESFKQAFKRADEALYEAKRSGRNRLI-YKGVEDD 589


>gi|327485587|gb|AEA79993.1| extracellular solute-binding protein, family 3/GGDEF domain protein
           [Vibrio cholerae LMA3894-4]
          Length = 461

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
           ++L  +  ++S L++ D L+ + N  +F   L +   +   L+++ FDID FK IND FG
Sbjct: 289 QQLEEANQKLSYLAKTDSLTDIANRRSFFEYLEAEQTRSGSLTLMVFDIDDFKTINDRFG 348

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD  I F+   +     +  +  R+GGEEFA  A G + +E+  LA  + + +   +
Sbjct: 349 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 408

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             +++  S+ +TIS G A   H   P S  ++ AD  +Y  K++G+N+VV
Sbjct: 409 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 456


>gi|325971342|ref|YP_004247533.1| diguanylate cyclase [Spirochaeta sp. Buddy]
 gi|324026580|gb|ADY13339.1| diguanylate cyclase [Spirochaeta sp. Buddy]
          Length = 320

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 83/159 (52%), Gaps = 8/159 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            +++ +S  D L+GL N       L + +   S + FD+D+FK IND +GH  GD+V+  
Sbjct: 168 KQLTFISEHDWLTGLYNRRKLDRYLLNKDSFTSAILFDLDHFKTINDTYGHQKGDQVLKE 227

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           L+D    +      VGR GGEEF    L  + +E   +A +LR++I   Q        I 
Sbjct: 228 LADLAQSLVLPDEVVGRWGGEEF----LILTHREGYAVAQNLREVIAAYQF----AKGIT 279

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           IT S G+A+    + +  +I   DQ LY AK  GRNRVV
Sbjct: 280 ITASFGVAKCNQHQSVQALISTIDQNLYTAKLQGRNRVV 318


>gi|157737071|ref|YP_001489754.1| GGDEF domain-containing protein [Arcobacter butzleri RM4018]
 gi|157698925|gb|ABV67085.1| GGDEF domain protein [Arcobacter butzleri RM4018]
          Length = 551

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 121/245 (49%), Gaps = 26/245 (10%)

Query: 27  FMIYFS---------IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISIT 77
           FMIYF          I FS FI ++ ++ +  L    L P+      +   + L+++S +
Sbjct: 313 FMIYFFFKGNKETKIITFSFFIISIYWLYSS-LIAAALVPWEEYPSDVAVFICLLLLSYS 371

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS 130
           +   L Y      +EL  +   ++ LS  D L+ L N      +L         Y E  S
Sbjct: 372 MVNKLNYT-----QELEDAKEELTILSSTDYLTKLNNRKNIDLALKMNENLYKRYKEPFS 426

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++ FD+D FK++ND +GH VGDK+I  ++D L         +GR GGEEF    L ++ Q
Sbjct: 427 VILFDLDDFKKVNDTYGHLVGDKIIIEIADLLRKYTRESDIIGRWGGEEFIIICLKTNLQ 486

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           EA ++A +L++ +   + +         T S G++     + I+ ++ RAD A+Y AK +
Sbjct: 487 EALVVALNLKEKVSLHKFDKVGNK----TASFGVSTFKDNDTITELLTRADDAMYKAKTN 542

Query: 251 GRNRV 255
           G+NRV
Sbjct: 543 GKNRV 547


>gi|309779542|ref|ZP_07674303.1| GGDEF domain-containing protein [Ralstonia sp. 5_7_47FAA]
 gi|308921783|gb|EFP67419.1| GGDEF domain-containing protein [Ralstonia sp. 5_7_47FAA]
          Length = 271

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQINDN 145
           F +   ++  +  D L+G+L    F   LGS        + E L  ++ D+D+FK IND 
Sbjct: 94  FAAERSLADRANTDHLTGMLARQRFFE-LGSFAVERAQHHAEPLCALYLDVDHFKSINDT 152

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD+ +  LSD L  V       GRLGG+EFA    G     A  +   L+  +  
Sbjct: 153 WGHAAGDEALVALSDALADVLRPADLFGRLGGDEFAVLLPGCGLTGALAVVERLKTAVAG 212

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +Q  +  GP   +T+S G A     + ++ ++  AD  L  AK+ GRNRV   +D++
Sbjct: 213 TQTPV--GP---LTVSVGAAPLRPGQDLARLLADADLGLMEAKRQGRNRVCVPTDVQ 264


>gi|239503815|ref|ZP_04663125.1| GGDEF family protein [Acinetobacter baumannii AB900]
 gi|323519787|gb|ADX94168.1| GGDEF domain-containing protein [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 397

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 131/282 (46%), Gaps = 36/282 (12%)

Query: 13  LCHEKNL-ESFSPHTFMIYF------------SIFFSIFI-ATVIFIANIFLFYIGLTPF 58
           LCH+  L  S SP T + Y              I +S FI AT+I     +L   G+   
Sbjct: 117 LCHDGYLIGSISPATMVGYVGTIGVGLVLFERKIVYSAFIPATIILAVCTYLSMTGV--- 173

Query: 59  YGLEYILVENLSLVIISITISLLLG---------YISGSILKELFISYNR-----ISQLS 104
             + Y  + N + +  + T    LG          ++  IL E+ ++  R     I +LS
Sbjct: 174 --ISYAPLFNFTAMRHAQTNPFWLGSMLFFIMPILVACFILFEILLTQWRQRETYIQRLS 231

Query: 105 RIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +ID L+ +LN  +  + L + +E+    +++  DID+FK+IND +GH  GD+V+  ++  
Sbjct: 232 QIDPLTNVLNRRSLNTHLEALHEQQFDYAVILLDIDHFKKINDIYGHHQGDQVLIEIAQC 291

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L         +GR GGEEF      +   +A  +A   R+ ++   I  +    IH++ S
Sbjct: 292 LSENLRNEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRQALQELTIFNNQNIQIHVSAS 351

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            GI+          +I +ADQALY  K SGRN+V  F  +  
Sbjct: 352 FGISSSAFANDPYLVIRQADQALYAVKASGRNQVRTFHQLPQ 393


>gi|262043458|ref|ZP_06016581.1| cellulose synthesis regulatory protein [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259039200|gb|EEW40348.1| cellulose synthesis regulatory protein [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 438

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 107/203 (52%), Gaps = 17/203 (8%)

Query: 69  LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------IS 120
           L+L+ +  T+ LLL ++    +++ + +    +   +  D L+ LLN  A         S
Sbjct: 236 LTLMWVLFTLMLLLSWLVIRRMVRNMSVLQTSLEWQAWHDALTRLLNRGALFEQAMAVAS 295

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   L+++  D+D+FK IND +GH  GD+V++ ++  L         +GR+GGEEF
Sbjct: 296 DCQRSGRPLAVIQLDLDHFKHINDRYGHQAGDRVLSMVASTLSSAVRQGDLLGRVGGEEF 355

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-----EPIST 235
                 ++ QEAA +A  LR+ I+  ++ + +  ++ ++ S G++    +     E + +
Sbjct: 356 CIVMPNTTLQEAAAVAERLRQRIQGREVFLHNNVTLRVSASLGVSASEERGEYQFEALQS 415

Query: 236 IIYRADQALYVAKKSGRNRVVCF 258
           +   AD  LY+AK++GRN+ VCF
Sbjct: 416 V---ADGRLYLAKQNGRNQ-VCF 434


>gi|260754039|ref|YP_003226932.1| diguanylate cyclase with beta propeller sensor [Zymomonas mobilis
            subsp. mobilis NCIMB 11163]
 gi|258553402|gb|ACV76348.1| diguanylate cyclase with beta propeller sensor [Zymomonas mobilis
            subsp. mobilis NCIMB 11163]
          Length = 1045

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 17/175 (9%)

Query: 92   ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
            EL  +  ++S+L+  D L+GLLN  A ++ L   ++        +SI   D+D+FK+IND
Sbjct: 875  ELQQANKQLSELANTDVLTGLLNRRALMAKLSELHQDALLNENAISIAMLDVDHFKKIND 934

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF---AAAALGSSEQEAAILANDLRK 201
             +GH VGD V+   +  +        F GR GG+EF    +A++  S   A  + N+  K
Sbjct: 935  RYGHLVGDDVMRNAASIIRNNIRQEDFAGRYGGDEFIIAISASIEMSRHIAERIRNEFTK 994

Query: 202  IIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I+      I +G + + IT+S G+ E   +E IS  + +AD  LY AK +GRNRV
Sbjct: 995  IV------IKNGETELKITVSIGLFEITTEESISIALDKADSLLYWAKNNGRNRV 1043


>gi|254849718|ref|ZP_05239068.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|254845423|gb|EET23837.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
          Length = 385

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
           ++L  +  ++S L++ D L+ + N  +F   L +   +   L+++ FDID FK IND FG
Sbjct: 213 QQLEEANQKLSYLAKTDSLTDIANRRSFFEHLEAEQTRSGSLTLMVFDIDDFKTINDRFG 272

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD  I F+   +     +  +  R+GGEEFA  A G + +E+  LA  + + +   +
Sbjct: 273 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 332

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             +++  S+ +TIS G A   H   P S  ++ AD  +Y  K++G+N+VV
Sbjct: 333 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 380


>gi|56461587|ref|YP_156868.1| intracellular signaling protein [Idiomarina loihiensis L2TR]
 gi|56180597|gb|AAV83319.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Idiomarina
           loihiensis L2TR]
          Length = 453

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 105/208 (50%), Gaps = 21/208 (10%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           LTPF  L+   +E +SL+  +I   +    I+ S  K       R+ +L+  D L+GL N
Sbjct: 255 LTPFTELD---IELMSLICSAIETII----INSSKTK-------RLEKLAYTDFLTGLSN 300

Query: 115 H---SAFISSLGSYNEKLSIV----FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
               +     L   + K + V      D+D+FK++NDN+GH  GD+V+   + ++  +  
Sbjct: 301 RLFITERFEELEPNDNKFANVTCFAIIDVDHFKKVNDNYGHDAGDEVLQQTARKIAGLVR 360

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
               V R+GGEEFA        ++A  +   +R  IE + I I    SI +T+S G  E 
Sbjct: 361 ISDCVSRVGGEEFALLLTDLPREKAERVLEKVRTAIEGNAITIDKNQSIKVTVSIGATEL 420

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRV 255
             ++  ++   +AD ALY +K+ GRNRV
Sbjct: 421 KAEDEFNSAYKKADLALYKSKRDGRNRV 448


>gi|224368331|ref|YP_002602494.1| hypothetical protein HRM2_12180 [Desulfobacterium autotrophicum
           HRM2]
 gi|223691047|gb|ACN14330.1| conserved hypothetical protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 488

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 82/163 (50%), Gaps = 8/163 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+++++  D L+G+ N  AF       +  +      LSI+ FD+D+FK++ND +GH  G
Sbjct: 314 RLTKMASTDKLTGVYNRRAFDIIIDQTLKEIQRKQTPLSIILFDLDHFKRVNDTYGHLAG 373

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D +I                + R GGEEF     G    +A   A  +R  +  SQ    
Sbjct: 374 DYIIQTTVGTAARTIRNSDILCRWGGEEFLILLKGCDLGDAMKTAEKIRTAVA-SQPARY 432

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
               I +TIS G+ E   ++   T++ RAD+ALY+AK SG+NR
Sbjct: 433 GDDQICVTISVGVTEHTGQDTKETLLKRADKALYLAKASGKNR 475


>gi|153800684|ref|ZP_01955270.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|124123819|gb|EAY42562.1| GGDEF family protein [Vibrio cholerae MZO-3]
          Length = 469

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
           ++L  +  ++S L++ D L+ + N  +F   L +   +   L+++ FDID FK IND FG
Sbjct: 297 QQLEEANQKLSYLAKTDSLTDIANRRSFFEYLEAEQTRSGSLTLMVFDIDDFKTINDRFG 356

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD  I F+   +     +  +  R+GGEEFA  A G + +E+  LA  + + +   +
Sbjct: 357 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 416

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             +++  S+ +TIS G A   H   P S  ++ AD  +Y  K++G+N+VV
Sbjct: 417 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 464


>gi|311694422|gb|ADP97295.1| diguanylate cyclase (GGDEF domain) [marine bacterium HP15]
          Length = 308

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 87/174 (50%), Gaps = 10/174 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148
            Y  I Q S  D L+G+ N  A   +L         + E  S+V  D+D+FK +ND  GH
Sbjct: 136 QYVAIEQASLTDSLTGIPNKRALDDALQRSSLLSERHGEPYSLVLCDLDHFKTVNDTHGH 195

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD ++   + ++     T   V R GGEEFA     +SEQ+A  +A  +R+ I  + I
Sbjct: 196 VVGDHLLQLAACEIEKSIRTSDSVYRFGGEEFAILLPHTSEQDARDVAERVREAI--AAI 253

Query: 209 NISSG-PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            +  G   + +T S G+A    KE     + RAD+ALY AK  GRN    F+ I
Sbjct: 254 RVDGGEKELKVTTSCGVATFLPKEAPQAWLARADEALYRAKHQGRNCTRVFATI 307


>gi|237808597|ref|YP_002893037.1| diguanylate cyclase [Tolumonas auensis DSM 9187]
 gi|237500858|gb|ACQ93451.1| diguanylate cyclase [Tolumonas auensis DSM 9187]
          Length = 392

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 110/209 (52%), Gaps = 20/209 (9%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------S 116
           +LV N+ +V++ ++ S++L  I+   L++      +++  +  D L+G+ N        +
Sbjct: 192 LLVFNVIIVLLGLSFSIML--ITSQWLQQ------KLAAFASYDALTGIYNRYGLNEQSA 243

Query: 117 AFISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
           A  +S G  +    S+   DIDYFK+ ND++GHPVGD V+  ++++L         + R 
Sbjct: 244 ALFNSDGKLSATDYSVAMIDIDYFKKTNDDYGHPVGDAVLKEVAERLRQNIRHHDILARY 303

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           GGEEF     G++  +A   A  +R  +    I +    +I IT+S G+     K+  S 
Sbjct: 304 GGEEFIVVLPGTNITDALHWAERVRAQVAAKPIQVDQ-HAIQITLSIGVVALPGKDKHSA 362

Query: 236 I---IYRADQALYVAKKSGRNRVVCFSDI 261
               I +AD ALY AK++GRN+V CF  +
Sbjct: 363 FDEAIRQADIALYQAKENGRNQVRCFGAV 391


>gi|153831317|ref|ZP_01983984.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|148873202|gb|EDL71337.1| GGDEF family protein [Vibrio cholerae 623-39]
          Length = 200

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
           ++L  +  ++S L++ D L+ + N  +F   L +   +   L+++ FDID FK IND FG
Sbjct: 28  QQLEEANQKLSYLAKTDSLTDIANRRSFFEYLEAEQSRSGSLTLMVFDIDDFKTINDRFG 87

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD  I F+   +     +  +  R+GGEEFA  A G + +E+  LA  + + +   +
Sbjct: 88  HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 147

Query: 208 INISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
             +++  S+ +TIS G A   H   P S  ++ AD  +Y  K++G+N+VV
Sbjct: 148 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 195


>gi|306842317|ref|ZP_07474977.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2]
 gi|306287574|gb|EFM59030.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2]
          Length = 381

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 82/164 (50%), Gaps = 13/164 (7%)

Query: 101 SQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           S+ S ID LS + N   F   +         +   +I+  D+DYFK++ND +GH  GD+V
Sbjct: 219 SEQSEIDALSQIYNRRGFDRHVMRRLMRKGPDTPYAIIMSDLDYFKRVNDTYGHDCGDRV 278

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213
           I      L      P    R+GGEEF     G+     A+ A+DL + +  +   +S SG
Sbjct: 279 IEAFGGLLRTHLPKPAVAARMGGEEFVVFMPGAD----AVAAHDLAQTLRTTMTALSFSG 334

Query: 214 PSIHI--TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +     T S G+AE    E +   I RAD ALY AKK+GRNRV
Sbjct: 335 DAAEWMPTASFGVAEHRVGEGLYDTIRRADGALYEAKKAGRNRV 378


>gi|262396757|ref|YP_003288610.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio sp. Ex25]
 gi|262340351|gb|ACY54145.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio sp. Ex25]
          Length = 451

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 88/172 (51%), Gaps = 11/172 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFG 147
           ++L I+  ++ +++  D L+ L N    I  L   N     L+++ FDID FK IND +G
Sbjct: 268 RQLTIANQQLLEMTLTDSLTKLYNRRHLIEQLALLNHLQRSLTVMVFDIDDFKSINDQYG 327

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD+ I  +++    +    M + R+GGEEFA      SE+EA   A  L K +    
Sbjct: 328 HLVGDRAIVAVAETAKSMTDERMTLARIGGEEFALVTASLSEREARNFAQMLCKAVYEQP 387

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYR---ADQALYVAKKSGRNRVV 256
           I I  G +IH++IS G    C   P  T I     ADQ +Y  K  G+NR V
Sbjct: 388 I-ILGGQAIHLSISLG----CAYYPEFTHIVNLQDADQLMYQGKSEGKNRAV 434


>gi|167625252|ref|YP_001675546.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167355274|gb|ABZ77887.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 396

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 106/215 (49%), Gaps = 28/215 (13%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
            + + ++   +L L I   T++ +  YI   +    F++Y         D L+GL +  A
Sbjct: 191 LWAVHFVFPASLPLSISMTTLATI--YILTVLTDSYFLAYR--------DELTGLASRRA 240

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
             + + S   K S+   DID+FK+ ND +GH VGD+V+  ++ ++  V G      R GG
Sbjct: 241 LYNLVLSLGRKYSVAMLDIDHFKKFNDTYGHDVGDQVLRLVASKIAKVSGGGKAF-RYGG 299

Query: 178 EEF--------AAAALG-------SSEQEAAILANDLRKIIENSQINISSGPS--IHITI 220
           EEF        ++A LG       + E+   +L N+ RK    ++   +   S  + +TI
Sbjct: 300 EEFTVIFPRKDSSAVLGYLEDVREAIEEYDIVLRNEQRKSQSKAKRGKAQQKSQTVSVTI 359

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S G+AE    E     + R+DQALY AKK GRN++
Sbjct: 360 SIGVAEHQSGETFEQTMKRSDQALYKAKKKGRNQI 394


>gi|62289400|ref|YP_221193.1| GGDEF domain-containing protein [Brucella abortus bv. 1 str. 9-941]
 gi|82699327|ref|YP_413901.1| GGDEF [Brucella melitensis biovar Abortus 2308]
 gi|189023651|ref|YP_001934419.1| GGDEF domain protein [Brucella abortus S19]
 gi|237814886|ref|ZP_04593884.1| diguanylate cyclase (GGDEF) domain-containing protein [Brucella
           abortus str. 2308 A]
 gi|254688713|ref|ZP_05151967.1| GGDEF domain protein [Brucella abortus bv. 6 str. 870]
 gi|254696841|ref|ZP_05158669.1| GGDEF domain protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|254703766|ref|ZP_05165594.1| GGDEF domain protein [Brucella suis bv. 3 str. 686]
 gi|254729746|ref|ZP_05188324.1| GGDEF domain protein [Brucella abortus bv. 4 str. 292]
 gi|256031055|ref|ZP_05444669.1| GGDEF domain protein [Brucella pinnipedialis M292/94/1]
 gi|256256960|ref|ZP_05462496.1| GGDEF domain protein [Brucella abortus bv. 9 str. C68]
 gi|260545848|ref|ZP_05821589.1| GGDEF domain-containing protein [Brucella abortus NCTC 8038]
 gi|260754191|ref|ZP_05866539.1| predicted protein [Brucella abortus bv. 6 str. 870]
 gi|260757411|ref|ZP_05869759.1| predicted protein [Brucella abortus bv. 4 str. 292]
 gi|260761236|ref|ZP_05873579.1| predicted protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883216|ref|ZP_05894830.1| predicted protein [Brucella abortus bv. 9 str. C68]
 gi|261754413|ref|ZP_05998122.1| predicted protein [Brucella suis bv. 3 str. 686]
 gi|265988127|ref|ZP_06100684.1| predicted protein [Brucella pinnipedialis M292/94/1]
 gi|297247813|ref|ZP_06931531.1| GGDEF domain-containing protein [Brucella abortus bv. 5 str. B3196]
 gi|62195532|gb|AAX73832.1| GGDEF domain [Brucella abortus bv. 1 str. 9-941]
 gi|82615428|emb|CAJ10397.1| GGDEF [Brucella melitensis biovar Abortus 2308]
 gi|189019223|gb|ACD71945.1| GGDEF domain protein [Brucella abortus S19]
 gi|237789723|gb|EEP63933.1| diguanylate cyclase (GGDEF) domain-containing protein [Brucella
           abortus str. 2308 A]
 gi|260097255|gb|EEW81130.1| GGDEF domain-containing protein [Brucella abortus NCTC 8038]
 gi|260667729|gb|EEX54669.1| predicted protein [Brucella abortus bv. 4 str. 292]
 gi|260671668|gb|EEX58489.1| predicted protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674299|gb|EEX61120.1| predicted protein [Brucella abortus bv. 6 str. 870]
 gi|260872744|gb|EEX79813.1| predicted protein [Brucella abortus bv. 9 str. C68]
 gi|261744166|gb|EEY32092.1| predicted protein [Brucella suis bv. 3 str. 686]
 gi|264660324|gb|EEZ30585.1| predicted protein [Brucella pinnipedialis M292/94/1]
 gi|297174982|gb|EFH34329.1| GGDEF domain-containing protein [Brucella abortus bv. 5 str. B3196]
          Length = 381

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 82/164 (50%), Gaps = 13/164 (7%)

Query: 101 SQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           S+ S ID LS + N   F   +         +   +I+  D+DYFK++ND +GH  GD+V
Sbjct: 219 SEQSEIDALSQIYNRRGFDRHVMRRLMRKGPDTPYAIIMSDLDYFKRVNDTYGHDCGDRV 278

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213
           I      L      P    R+GGEEF     G+     A+ A+DL + +  +   +S SG
Sbjct: 279 IEAFGGLLRTHLPKPAVAARMGGEEFVVFMPGAD----AVAAHDLAQTLRTTMTALSFSG 334

Query: 214 PSIHI--TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +     T S G+AE    E +   I RAD ALY AKK+GRNRV
Sbjct: 335 DAAEWMPTASFGVAEHRVGEGLYDTIRRADGALYEAKKAGRNRV 378


>gi|71906795|ref|YP_284382.1| diguanylate cyclase with PAS/PAC sensor [Dechloromonas aromatica
           RCB]
 gi|71846416|gb|AAZ45912.1| diguanylate cyclase with PAS/PAC sensor [Dechloromonas aromatica
           RCB]
          Length = 469

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 85/168 (50%), Gaps = 7/168 (4%)

Query: 96  SYNRISQLSRIDCLSGLLN----HSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGH 148
           S  R   LS+ D L+GL N    H    + L   G Y   LS++  D D FK +ND +GH
Sbjct: 296 SEERYRSLSQTDSLTGLFNSRHLHEQLPNELERAGRYGRPLSLLVLDCDNFKCVNDRYGH 355

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GDKV+  L+  +        F  R GGEEF      ++ Q A  +A  LR    + + 
Sbjct: 356 LGGDKVLQSLATAIGHCLRRSDFAFRYGGEEFVVLLPETAIQAALAIAERLRSQFASIET 415

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              SG +I  T+S G+AE    E  ++++ RAD+A Y+AK  G+N VV
Sbjct: 416 PAPSGDAICCTVSIGVAECVPGESEASLVRRADEACYMAKARGKNCVV 463


>gi|332296092|ref|YP_004438015.1| diguanylate cyclase [Thermodesulfobium narugense DSM 14796]
 gi|332179195|gb|AEE14884.1| diguanylate cyclase [Thermodesulfobium narugense DSM 14796]
          Length = 337

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 84/166 (50%), Gaps = 13/166 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  LS  D L+G+ N   F       IS    Y ++LS +FFDID FK +ND FGH +GD
Sbjct: 176 LRNLSEKDPLTGIYNRRKFQEICEHSISESDRYKKELSFIFFDIDNFKMVNDTFGHNIGD 235

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  +++ +        +  R GGEEF      ++   A  +A  +RK IE     +  
Sbjct: 236 VVLKEIANIVKREIRKSDYFARWGGEEFILILPETNINSALTVAEKIRKSIE-----VYE 290

Query: 213 GPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            P++  +T+S G+A R   E  S +  R D A+Y AK  G+N VV 
Sbjct: 291 FPAVGRVTVSIGVASRKFSEDYSDLFKRLDDAVYRAKSLGKNTVVA 336


>gi|254693196|ref|ZP_05155024.1| GGDEF domain protein [Brucella abortus bv. 3 str. Tulya]
 gi|261213438|ref|ZP_05927719.1| predicted protein [Brucella abortus bv. 3 str. Tulya]
 gi|260915045|gb|EEX81906.1| predicted protein [Brucella abortus bv. 3 str. Tulya]
          Length = 381

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 82/164 (50%), Gaps = 13/164 (7%)

Query: 101 SQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           S+ S ID LS + N   F   +         +   +I+  D+DYFK++ND +GH  GD+V
Sbjct: 219 SEQSEIDALSQIYNRRGFDRHVMRRLMRKGPDTPYAIIMSDLDYFKRVNDTYGHDCGDRV 278

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213
           I      L      P    R+GGEEF     G+     A+ A+DL + +  +   +S SG
Sbjct: 279 IEAFGGLLRTHLPKPAVAARMGGEEFVVFMPGAD----AVAAHDLAQTLRTTMTALSFSG 334

Query: 214 PSIHI--TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +     T S G+AE    E +   I RAD ALY AKK+GRNRV
Sbjct: 335 DAAEWMPTASFGVAEHRVGEGLYDTIRRADGALYEAKKAGRNRV 378


>gi|241765550|ref|ZP_04763510.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
 gi|241364639|gb|EER59677.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
          Length = 398

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 12/165 (7%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            Q + +D L+G+ N  A ++ L             ++++  DID FK++ND +GH  GD 
Sbjct: 219 QQQALLDPLTGVPNRRALMAELERTLAQAVRERRPVALLMMDIDRFKRVNDTYGHVAGDA 278

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+A ++  L        F+GR GGEEF A   G+    A ++A  LR  +E  ++ +   
Sbjct: 279 VLAAVAQCLKGGLRGQDFIGRYGGEEFLALLPGTDAAGAGVVAEHLRARVE--RLTMPWE 336

Query: 214 PS-IHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
           P  I +T+S G   R   E      ++  ADQA+Y AK++GRNRV
Sbjct: 337 PEDIRVTVSIGAHTRVPDEGTGAQAMVDVADQAMYAAKRAGRNRV 381


>gi|308185567|ref|YP_003929698.1| hypothetical protein Pvag_0026 [Pantoea vagans C9-1]
 gi|308056077|gb|ADO08249.1| Uncharacterized membrane protein [Pantoea vagans C9-1]
          Length = 365

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 91/179 (50%), Gaps = 7/179 (3%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQIND 144
           ++ +L+      S LS +D L+GL N     + L +  E  +    ++  DID+FK  ND
Sbjct: 176 LMHQLYEEKETFSDLSMLDPLTGLYNRRGLKNRLDNILENHAGSHYVLLLDIDHFKAYND 235

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH +GD+ +A +S  +     +   V R GGEEF       +   A  LA  +R+ + 
Sbjct: 236 NYGHAMGDQALARVSVAIRDAVRSRDVVTRYGGEEFLVLMTNVNSSIAMKLAERIRQYVL 295

Query: 205 NSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           + +I    +   S H+TISAGIA   +       +  AD ALYVAK  GRN ++ + D+
Sbjct: 296 DLEIPHLFNETVSTHVTISAGIAP-IYDNEFDLAVANADSALYVAKNQGRNTILAWEDL 353


>gi|258624543|ref|ZP_05719483.1| GGDEF family protein [Vibrio mimicus VM603]
 gi|258583158|gb|EEW07967.1| GGDEF family protein [Vibrio mimicus VM603]
          Length = 352

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 118/265 (44%), Gaps = 30/265 (11%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           +W C       F P  F I+ S  F+   +++  I              G+ Y  ++N  
Sbjct: 98  VWSC-------FVPILFYIFTSARFAFLTSSLFLILQ-----------SGIVYWQLQNEP 139

Query: 71  LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSY 125
           L+  S+ + L   YI   ++  ++    R     +  L+  D L+   N  +  +S   +
Sbjct: 140 LISWSVLLHLSFAYIGIWVVSHVYEQNRRKIENSLLYLASRDPLTSAHNRLSLTTSFQHF 199

Query: 126 NE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            +      LS++  D+D+FK IND FGH  GDKV+   +  L  V G      R+GGEEF
Sbjct: 200 EQFNDQTTLSLLVIDLDFFKSINDQFGHDTGDKVLIETTRLLAQVVGDNNLY-RIGGEEF 258

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                  S ++A  +   LR II +  I       + +TIS G+ E    + ++ ++  A
Sbjct: 259 CVTLFDQSLEQAERVCERLRAII-SQHIFAFGDKRVQVTISIGVCEYQPGDQLNDLLKFA 317

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D  LY AKK+GRN+V  F   +  T
Sbjct: 318 DIELYRAKKAGRNQVRLFKHAQTQT 342


>gi|229523051|ref|ZP_04412463.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae TM 11079-80]
 gi|229339901|gb|EEO04911.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae TM 11079-80]
          Length = 469

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
           ++L  +  ++S L++ D L+ + N  +F   L +   +   L+++ FDID FK IND FG
Sbjct: 297 QQLEEANQKLSYLAKTDSLTDIANRRSFFEYLEAEQARSGSLTLMVFDIDDFKTINDRFG 356

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD  I F+   +     +  +  R+GGEEFA  A G + +E+  LA  + + +   +
Sbjct: 357 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 416

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             +++  S+ +TIS G A   H   P S  ++ AD  +Y  K++G+N+VV
Sbjct: 417 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 464


>gi|224823606|ref|ZP_03696715.1| diguanylate cyclase with PAS/PAC and GAF sensors [Lutiella
           nitroferrum 2002]
 gi|224604061|gb|EEG10235.1| diguanylate cyclase with PAS/PAC and GAF sensors [Lutiella
           nitroferrum 2002]
          Length = 737

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 84/161 (52%), Gaps = 9/161 (5%)

Query: 103 LSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GLLN  +F+            Y   LSI+  D+D+FK IND  GH  GD+V+
Sbjct: 565 LATRDGLTGLLNRRSFMEVGEAEVLRSKRYGHDLSIMMMDLDHFKGINDQHGHATGDQVL 624

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +      F     VGRLGGEEF      ++  EA ILA  LR  ++ S + ++ G +
Sbjct: 625 QHFATLCGNTFRHADIVGRLGGEEFGVLLPFTTLAEAGILAERLRAEVDGSVV-MACGVA 683

Query: 216 IHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255
           +H T+S GI+      + I   + RAD  LY AK  GRNR+
Sbjct: 684 VHYTVSIGISSVFPDDKDIDGPLSRADTLLYQAKTLGRNRI 724


>gi|89094058|ref|ZP_01167002.1| Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF)
           [Oceanospirillum sp. MED92]
 gi|89081732|gb|EAR60960.1| Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF)
           [Oceanospirillum sp. MED92]
          Length = 430

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 86/169 (50%), Gaps = 9/169 (5%)

Query: 99  RISQLSRIDCLSGLLNHSA----FISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ +L+  D L+ L N       F   L      ++ LS+ FFD DYFK IND +GH  G
Sbjct: 262 KLQELAAYDELTKLRNRRECTRIFDKQLNFAQRNDQPLSLCFFDFDYFKSINDQYGHMAG 321

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+   +  L        ++ R GGEEF   +  ++ QE  +LA +LR  + N  ++  
Sbjct: 322 DYVLKETAKFLTENLRVSDYLFRWGGEEFILISANTTRQEMQVLAENLRAKLANLLLDY- 380

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            G SIH+T S GIA    H E  S +I  AD ALY AK  GRN V  F 
Sbjct: 381 DGQSIHVTGSFGIASYPQHGESQSELILAADSALYQAKSDGRNCVRLFQ 429


>gi|327537619|gb|EGF24331.1| diguanylate cyclase [Rhodopirellula baltica WH47]
          Length = 322

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 81/159 (50%), Gaps = 9/159 (5%)

Query: 104 SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GL N  AF   L        +  +  +++  DID+FK IND  GHP+GD V+ 
Sbjct: 147 ARTDGLTGLFNRRAFDKKLDELFSAYRAGGKSFTLILMDIDHFKMINDTHGHPIGDIVLQ 206

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +S +L         V R GGEEFA        + AA   N LR  I N  ++  S   +
Sbjct: 207 QISQRLGHGMQDAEIVSRFGGEEFAILTH-LPIRAAADKINKLRDRIANDPVDAGSA-EL 264

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +T+S G++       I  I+ RAD+ALY AK  GRNRV
Sbjct: 265 QVTLSVGLSTPHEDLVIGPIVRRADEALYSAKNMGRNRV 303


>gi|149374538|ref|ZP_01892312.1| response regulator receiver domain protein (CheY-like)
           [Marinobacter algicola DG893]
 gi|149361241|gb|EDM49691.1| response regulator receiver domain protein (CheY-like)
           [Marinobacter algicola DG893]
          Length = 636

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 11/170 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
           N++ +LS  D L+GL N   F  +  S       +++ LS++  DID+FK+ ND  GH V
Sbjct: 454 NQLRELSATDALTGLKNRGHFDRTFSSAVVKAYRFSQPLSLLLLDIDHFKKFNDTHGHLV 513

Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD  +  +++ +      P     R GGEEF      +  + A  +A  +R  IE +   
Sbjct: 514 GDDCLQMVANCIREYVTRPQDLAARYGGEEFVVLLPDTPREGALRVAEKIRSRIEETGFR 573

Query: 210 ISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257
           +S    +H+T+S G+   C  +  +T  I   AD+ALY AK  GRN+VV 
Sbjct: 574 VSD-EVLHLTVSIGLCAVCPSQADATKDIFSWADEALYEAKGRGRNQVVA 622


>gi|15615598|ref|NP_243902.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|10175658|dbj|BAB06755.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 567

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 91/175 (52%), Gaps = 11/175 (6%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLG-SYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
            Q S  D L+GL N    + +L  + NE     SI+  D+D+FK+IND +GH  G+ V+ 
Sbjct: 388 KQESVRDPLTGLYNFRYMMEALKKTVNEADFPFSIILLDLDHFKKINDTYGHQSGNDVLE 447

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA----ILANDL--RKIIENSQINI 210
            ++D++  +      + R GGEEF        E++A     +L  D   R I+  S + +
Sbjct: 448 AVADRMRKICPDNSVISRYGGEEFVILLPHHGEEDARQVGILLQQDFSSRSILIRSDLLV 507

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALY-VAKKSGRNRVVCFSDIENN 264
                I +T S GIAE   K+    +I +AD+A+Y  AK  GRNRV  +SDI+  
Sbjct: 508 GETVDIKVTASFGIAEAGKKDHAMDLIRKADRAMYNGAKSKGRNRVATYSDIKQE 562


>gi|324114581|gb|EGC08549.1| GGDEF domain-containing protein [Escherichia fergusonii B253]
          Length = 467

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 9/161 (5%)

Query: 107 DCLSGLLNHSAFIS-------SLGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+ LLN   FI        S+  ++ K  ++   DIDYFKQIND +GH  GD  +  +
Sbjct: 302 DSLTQLLNRR-FIPTIMRREISIALHSRKPFALAMLDIDYFKQINDRYGHNAGDNTLKNV 360

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           S  +     +  +V R GGEEF    + +   +A I+  +LR  +   +I  S+  S  +
Sbjct: 361 SAMIYEHIRSSDYVFRYGGEEFMILLVETELSQAKIILENLRNKMAGLRIQASASESFSV 420

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           T+S G+AE  +      +I +AD ALY AK  GRNRV  F 
Sbjct: 421 TVSIGVAEYDYHPDYKLLIEKADSALYYAKSQGRNRVEVFQ 461


>gi|229526858|ref|ZP_04416262.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae bv. albensis VL426]
 gi|229337016|gb|EEO02034.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae bv. albensis VL426]
          Length = 469

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
           ++L  +  ++S L++ D L+ + N  +F   L +   +   L+++ FDID FK IND FG
Sbjct: 297 QQLEEANQKLSYLAKTDSLTDIANRRSFFEYLEAEQTRSGSLTLMVFDIDDFKTINDRFG 356

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD  I F+   +     +  +  R+GGEEFA  A G + +E+  LA  + + +   +
Sbjct: 357 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 416

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             +++  S+ +TIS G A   H   P S  ++ AD  +Y  K++G+N+VV
Sbjct: 417 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 464


>gi|168177676|ref|ZP_02612340.1| GGDEF/HD domain protein [Clostridium botulinum NCTC 2916]
 gi|182670681|gb|EDT82655.1| GGDEF/HD domain protein [Clostridium botulinum NCTC 2916]
          Length = 567

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 9/172 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  L   D L+ + NH  F  +L          NE LS++F DIDYFK  ND +GH  G
Sbjct: 189 KLESLVNKDGLTDVYNHRFFHDALSKEVIECEEKNEALSMIFIDIDYFKHYNDLYGHQKG 248

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-I 210
           D+V+  + + L         V R GGEEFA     +SEQ+A  +A  +RK IE +     
Sbjct: 249 DQVLKTIGEILKNNTRKEDIVARYGGEEFAVLLPNTSEQDAINIAEKIRKKIEYTYFEGE 308

Query: 211 SSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261
            + P+ ++T+S GI+   +K      +I  AD ALY AK   +NRV  ++ I
Sbjct: 309 ENQPNGNLTVSMGISVYPYKAKSDMELIKSADDALYRAKFFNKNRVEAYTSI 360


>gi|157160994|ref|YP_001458312.1| diguanylate cyclase [Escherichia coli HS]
 gi|157066674|gb|ABV05929.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli HS]
          Length = 279

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 115 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 172

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 173 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 231

Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254
           G+       R   +  + ++  AD  LY +KK GRNR
Sbjct: 232 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 268


>gi|297580347|ref|ZP_06942274.1| GGDEF family protein [Vibrio cholerae RC385]
 gi|297535993|gb|EFH74827.1| GGDEF family protein [Vibrio cholerae RC385]
          Length = 469

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
           ++L  +  ++S L++ D L+ + N  +F   L +   +   L+++ FDID FK IND FG
Sbjct: 297 QQLEEANQKLSYLAKTDSLTDIANRRSFFEYLEAEQTRSGSLTLMVFDIDDFKTINDRFG 356

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD  I F+   +     +  +  R+GGEEFA  A G + +E+  LA  + + +   +
Sbjct: 357 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 416

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             +++  S+ +TIS G A   H   P S  ++ AD  +Y  K++G+N+VV
Sbjct: 417 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 464


>gi|148360603|ref|YP_001251810.1| GGDEF domain-containing protein [Legionella pneumophila str. Corby]
 gi|296106331|ref|YP_003618031.1| GGDEF domain protein [Legionella pneumophila 2300/99 Alcoy]
 gi|148282376|gb|ABQ56464.1| GGDEF domain protein [Legionella pneumophila str. Corby]
 gi|295648232|gb|ADG24079.1| GGDEF domain protein [Legionella pneumophila 2300/99 Alcoy]
          Length = 516

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 16/160 (10%)

Query: 107 DCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N  ++    + S   +      LS+   DID+FK+INDNFGH  GDKV+    
Sbjct: 359 DSLTGLPNRESYEEHILDSFQRWKRSSSALSLAVCDIDHFKRINDNFGHLAGDKVLK--- 415

Query: 160 DQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
            ++ ++F + +    F+ R+GGEEF      +S +EA  +   LRK++E+  +       
Sbjct: 416 -KVAMIFKSSIRTVDFIARIGGEEFVFIFEQTSSKEAFGILEKLRKLVEDC-LFYYREKK 473

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + +T+S G+     K+ I ++  RAD A+Y AK +GRNRV
Sbjct: 474 VDVTVSFGLTTVTEKDDIESLFMRADNAMYKAKNAGRNRV 513


>gi|83746672|ref|ZP_00943721.1| Hypothetical Protein RRSL_03583 [Ralstonia solanacearum UW551]
 gi|83726625|gb|EAP73754.1| Hypothetical Protein RRSL_03583 [Ralstonia solanacearum UW551]
          Length = 551

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 9/155 (5%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+L    F++   +         E L +V  D+D+FK+IND +GH VGD  +   +
Sbjct: 395 DHLTGVLTRRRFLALFETVLTRAHVRGESLVLVLADLDHFKRINDTWGHAVGDLALQRFA 454

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
                V  +   +GRLGGEEFA     ++ ++AA +   LR I+  +  ++ SG  + +T
Sbjct: 455 SLATGVMRSSDLIGRLGGEEFAVVMSSTTLEDAAGVVERLRAIVAEADDSLPSG--LTMT 512

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +S G+      +  S ++ RAD ALY AK+SGRNR
Sbjct: 513 VSLGMTACRSGDTASEMLRRADLALYRAKESGRNR 547


>gi|109899014|ref|YP_662269.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109701295|gb|ABG41215.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
          Length = 339

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 92/167 (55%), Gaps = 10/167 (5%)

Query: 98  NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ Q++ +D L+GL N             SL    + +S++  D+D+FK++ND +GH +
Sbjct: 173 KRLQQMASVDPLTGLNNRLLLDSSFEMLCESLPEQQQTVSMLLIDLDHFKKVNDEYGHDI 232

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDKV+  ++  +        +  RLGGEEF      +SEQ+A  +A  +R I+E   I I
Sbjct: 233 GDKVLIEVARLINETRRLNDWAFRLGGEEFCMLIPDTSEQQAKNIAERIRLIVEKD-ILI 291

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           +S   + I++S G++           IY+ AD+ LY AK++GRN+V+
Sbjct: 292 NS-KDMKISVSIGVSHWPEDGQTLNQIYKLADERLYKAKETGRNKVI 337


>gi|325474702|gb|EGC77888.1| GGDEF domain-containing protein [Treponema denticola F0402]
          Length = 1662

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 73/130 (56%), Gaps = 4/130 (3%)

Query: 132  VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
            + +D+D FK++ND FGH +GD V+   +   + V      +GR+GGEEF      + +++
Sbjct: 1363 LMYDLDKFKKVNDTFGHQMGDTVLKATAKTALGVLKKGQILGRVGGEEFVILLPNTEKKQ 1422

Query: 192  AAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250
            A I+A  +RK +E    +    P+I ITIS GIA    H      ++ + DQALY AK  
Sbjct: 1423 ALIIAEKIRKQVEALHFD---NPAIRITISMGIAVFPTHGTAEKDLLSKVDQALYAAKNW 1479

Query: 251  GRNRVVCFSD 260
            GRN+ V + +
Sbjct: 1480 GRNQTVVWEE 1489


>gi|320451385|ref|YP_004203481.1| diguanylate cyclase/phosphodiesterase domain 1 [Thermus scotoductus
           SA-01]
 gi|320151554|gb|ADW22932.1| diguanylate cyclase/phosphodiesterase domain 1 [Thermus scotoductus
           SA-01]
          Length = 358

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 84/157 (53%), Gaps = 13/157 (8%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N           +  +  Y   LS++  D+D FK+IND  GHPVGD+V+  L+
Sbjct: 204 DPLTGLRNRRYLDLVLERELFRVQRYRRPLSLLVLDLDNFKRINDTHGHPVGDRVLKALA 263

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L           RLGGEEFA     +   +A  +A+ LR+ +   ++  + G    I+
Sbjct: 264 RCLEEHIRQSDRAVRLGGEEFAVLLAETPLAQAVRMASRLRQAVATLRVFPAEG----IS 319

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S G+AE R    P+S ++ RAD ALY AK+ G+NRV
Sbjct: 320 VSIGVAEARPEDSPLS-LLKRADDALYQAKRRGKNRV 355


>gi|309791095|ref|ZP_07685630.1| signal transduction family protein (GGDEF domain protein)
           [Oscillochloris trichoides DG6]
 gi|308226879|gb|EFO80572.1| signal transduction family protein (GGDEF domain protein)
           [Oscillochloris trichoides DG6]
          Length = 415

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 93/184 (50%), Gaps = 14/184 (7%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDY 138
           G  L++ F+   R SQ    D L+ + N        H  F+ S       LSI+  D+DY
Sbjct: 220 GRHLQQTFLDLERQSQF---DSLTQVYNRRYFDAYLHREFLRSRRE-QTPLSIILCDVDY 275

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILAN 197
           FK  ND +GH +GD+ +  L   L      P   V R GGEEF      +S + A  +A 
Sbjct: 276 FKTYNDIYGHQMGDQCLRQLGMALAATIKRPGDIVARYGGEEFVIVLPHTSTEGAYAIAE 335

Query: 198 DLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +R  +E+  I +  +  S HIT+S G+A    +   S ++ RADQALY AK++G+N VV
Sbjct: 336 LVRANVESLNILHKGNQVSDHITLSCGVATSHGEIRASMLLERADQALYQAKQTGKNMVV 395

Query: 257 CFSD 260
           C  D
Sbjct: 396 CALD 399


>gi|239908809|ref|YP_002955551.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239798676|dbj|BAH77665.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 819

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/160 (35%), Positives = 77/160 (48%), Gaps = 8/160 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N     S +  Y E       ++  +  D+DYFKQ+ND +GH  GD V+  LS
Sbjct: 650 DPLTGLHNRRFLDSYMHQYEEISRRTEKRVGFLMVDVDYFKQVNDKYGHLAGDAVLKELS 709

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L           R GGEEF            +++A  +R+ +E     +  G +IH T
Sbjct: 710 GLLRQTVRAADLAVRFGGEEFLILLHEVRPDFTSVVAEKIRQTVETHAFPLPDGSTIHKT 769

Query: 220 ISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +S G AE           I  AD ALY AK+SGRN+V+CF
Sbjct: 770 VSVGFAEYPTDAASFYKAIKFADVALYKAKESGRNKVLCF 809


>gi|152967450|ref|YP_001363234.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216]
 gi|151361967|gb|ABS04970.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216]
          Length = 487

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 91/194 (46%), Gaps = 19/194 (9%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY- 125
           +  ++VI S  + LL+     ++L  L      +  L+R D L+GLLN  +  ++L    
Sbjct: 286 QGWAVVISSAVLFLLVVARMSALLGRLREQTALLGDLARTDPLTGLLNRRSADAALERVR 345

Query: 126 ------NEKLSIVFFDIDYFKQINDNFGHPVGDK-VIAFLSDQLVVVFGTPMFVGRLGGE 178
                    L +   D+D FK  ND  GHP GD+ ++   S    V+ GT + + R GGE
Sbjct: 346 ERTRREGTALVVALLDLDRFKDFNDTRGHPAGDRLLVGAASAWGAVLAGTGIQLARWGGE 405

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EF   A G        L +DLR ++   Q           T SAG+A    +E    ++ 
Sbjct: 406 EFLLVASGWETGRVEQLLDDLRAVVPEGQ-----------TFSAGLARWDGQEATDRLVA 454

Query: 239 RADQALYVAKKSGR 252
           RAD+ALY AK +GR
Sbjct: 455 RADEALYAAKHAGR 468


>gi|321314637|ref|YP_004206924.1| putative diguanylate cyclase or phosphodiesterase [Bacillus
           subtilis BSn5]
 gi|320020911|gb|ADV95897.1| putative diguanylate cyclase or phosphodiesterase [Bacillus
           subtilis BSn5]
          Length = 359

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 92/167 (55%), Gaps = 12/167 (7%)

Query: 104 SRIDCLSGLLNHSAFISSLGS-YNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +  D L+G+ N   F  +  + Y +       + ++++ DID+FK IND +GH  GD+V+
Sbjct: 192 AHFDFLTGVYNRRKFEETTKALYQQAADTPHFQFALIYMDIDHFKTINDQYGHHEGDQVL 251

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L  +L           R+GGEEFA      S  +AA +A  +R  + ++ I +++G  
Sbjct: 252 KELGLRLKQSIRNTDPAARIGGEEFAVLLPNCSLDKAARIAERIRSTVSDAPIVLTNGDE 311

Query: 216 IHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + +TIS G A   +  ++P S  I  ADQ LY AK++GRNR VCFS+
Sbjct: 312 LSVTISLGAAHYPNNTEQPGSLPIL-ADQMLYKAKETGRNR-VCFSE 356


>gi|302388955|ref|YP_003824776.1| diguanylate cyclase [Thermosediminibacter oceani DSM 16646]
 gi|302199583|gb|ADL07153.1| diguanylate cyclase [Thermosediminibacter oceani DSM 16646]
          Length = 570

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 95/176 (53%), Gaps = 12/176 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHP 149
           +++ S+L+  D L+ L N       L     ++       S++  DID+FK  ND +GH 
Sbjct: 395 FDKTSKLAVTDSLTRLYNLRYIYEELERMVNRVKNNGGVFSLIIIDIDHFKSYNDRYGHL 454

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI- 208
           VGD ++  L++ L         VGR GGEEF      +   EA  +A  +R+++E+++  
Sbjct: 455 VGDSILKKLAEVLKDNVRDNDIVGRYGGEEFVIILPDTPGAEAYAIAERIREVVESTEFA 514

Query: 209 NISSGPSIHITISAGIAERCHKEPIST--IIYRADQA-LYVAKKSGRNRVVCFSDI 261
              +G  I ITISAG+A  C  + ++   ++ +ADQA L+ AK+ GRNRVV F  +
Sbjct: 515 QTDTGKKIFITISAGVAS-CPDDALTVKELVRKADQALLFGAKQKGRNRVVEFKKM 569


>gi|226947564|ref|YP_002802655.1| GGDEF/HD domain protein [Clostridium botulinum A2 str. Kyoto]
 gi|226843784|gb|ACO86450.1| GGDEF/HD domain protein [Clostridium botulinum A2 str. Kyoto]
          Length = 567

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 9/172 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  L   D L+ + NH  F  +L          NE LS++F DIDYFK  ND +GH  G
Sbjct: 189 KLESLVNKDGLTDVYNHRFFHDALSKEVIECEEKNEALSMIFIDIDYFKHYNDLYGHQKG 248

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-I 210
           D+V+  + + L         V R GGEEFA     +SEQ+A  +A  +RK IE +     
Sbjct: 249 DQVLKTIGEILKNNTRKEDIVARYGGEEFAVLLPNTSEQDAINIAEKIRKKIEYTYFEGE 308

Query: 211 SSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261
            + P+ ++T+S GI+   +K      +I  AD ALY AK   +NRV  ++ I
Sbjct: 309 ENQPNGNLTVSMGISVYPYKAKSDMELIKSADDALYRAKFFNKNRVEAYTSI 360


>gi|254504882|ref|ZP_05117033.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
 gi|222440953|gb|EEE47632.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
          Length = 543

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 89/176 (50%), Gaps = 10/176 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++  L+R D L+GL N  AF       ++ L  +    S +  D+D FK IND  GH  
Sbjct: 359 RQLDALARQDALTGLANRRAFFDRLDQLLNELDRHPHPASFLMLDLDKFKIINDTRGHAA 418

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+   +            VGR+GGEEFA     +S ++A + A  LR  +   + + 
Sbjct: 419 GDEVLKAFASLCQETVRKVDVVGRIGGEEFAILLPHTSAEDATVFAERLRTAVAAIRFS- 477

Query: 211 SSGP--SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            +GP   +  T+S G++    +    T + +AD+ALY +K SGRNRV  +  + N+
Sbjct: 478 ETGPLSGLTFTVSIGLSAISERIDARTWLSQADKALYQSKASGRNRVTVYQKLSND 533


>gi|170747189|ref|YP_001753449.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170653711|gb|ACB22766.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 298

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 86/161 (53%), Gaps = 11/161 (6%)

Query: 102 QLSRIDCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +L+  D L+G  N  AF +      +     + +S +  DID+FK+IND  GH VGD  I
Sbjct: 131 RLAETDPLTGSYNRRAFFNRARAAVAQDPRPDAVSAILLDIDHFKRINDEHGHDVGDVAI 190

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++D   ++ G+    GRLGGEEFA    G    EA   A  LR  ++  +I  + GP 
Sbjct: 191 KAVAD---LISGS-GIAGRLGGEEFAVILPGRDLGEAVAHAERLRGDVQALRIRGAKGP- 245

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           I ++ S G++     + +  ++ RAD ALY AK  GRNRVV
Sbjct: 246 IALSCSFGVSTWRDGDSVEALVKRADVALYAAKGGGRNRVV 286


>gi|254285167|ref|ZP_04960133.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|150425170|gb|EDN16947.1| GGDEF family protein [Vibrio cholerae AM-19226]
          Length = 469

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
           ++L  +  ++S L++ D L+ + N  +F   L +   +   L+++ FDID FK IND FG
Sbjct: 297 QQLEEANQKLSYLAKTDSLTDIANRRSFFEYLEAEQTRSGSLTLMVFDIDDFKTINDRFG 356

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD  I F+   +     +  +  R+GGEEFA  A G + +E+  LA  + + +   +
Sbjct: 357 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 416

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             +++  S+ +TIS G A   H   P S  ++ AD  +Y  K++G+N+VV
Sbjct: 417 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 464


>gi|42522326|ref|NP_967706.1| GGDEF domain-containing protein [Bdellovibrio bacteriovorus HD100]
 gi|39574858|emb|CAE78699.1| GGDEF domain protein [Bdellovibrio bacteriovorus HD100]
          Length = 320

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 75/133 (56%), Gaps = 3/133 (2%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAA 184
           NE  S+V FDID+FK+IND++GHP GD V+  L   ++  +  +  F  R GGEEF    
Sbjct: 186 NEPFSLVTFDIDHFKKINDSYGHPGGDYVLKELCRIVITKLIRSNDFFARYGGEEFVLLL 245

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY-RADQA 243
            GS  + A  +   +R+ IE        G  I +TIS G+A +   E   T +Y RAD+A
Sbjct: 246 SGSPSKTAGEVGERIRQTIEAHDFTF-EGKKIPVTISVGVATKLPNETEWTQVYDRADKA 304

Query: 244 LYVAKKSGRNRVV 256
           LY +K+ GRNR  
Sbjct: 305 LYQSKQGGRNRTT 317


>gi|323496636|ref|ZP_08101688.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
 gi|323318289|gb|EGA71248.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
          Length = 319

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 89/162 (54%), Gaps = 5/162 (3%)

Query: 100 ISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           + Q +  D L+ L N  +F   I++L    +K+ ++  DID+FK  NDNFGH  GD VI 
Sbjct: 156 VQQDALFDSLTSLYNRRSFDNDITTLCQSGQKMCLILADIDHFKGYNDNFGHLFGDAVIK 215

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPS 215
            ++ +L +     +   R GGEEFA        + A   A+ LR+ IE   I +  SG  
Sbjct: 216 GIAKRLHINARDGVHAYRFGGEEFALIVPNKQLRIARQYADSLRRSIEKLSIKDKRSGKQ 275

Query: 216 I-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +IT S G+AE    E   ++I RAD+ LY AK+ GRNRV+
Sbjct: 276 VGNITASFGVAELQPDESPESLIERADKLLYEAKQLGRNRVM 317


>gi|289522278|ref|ZP_06439132.1| putative GGDEF domain protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289504114|gb|EFD25278.1| putative GGDEF domain protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 806

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 83/157 (52%), Gaps = 13/157 (8%)

Query: 106 IDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+G LN        S  I+    Y + +SI  FDID FK IND +GH VGD V+  L
Sbjct: 651 IDALTGALNRKGLQDKLSDLITKCRDYGKDISIFLFDIDGFKLINDTYGHLVGDLVLKEL 710

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           S+ +           R GG+EF   ++ S  Q A  +A+ LRK +E+      S   +H+
Sbjct: 711 SETVRKTIREDDVFVRWGGDEFLLISMISLNQ-ALHIAHRLRKNVES-----RSFSGMHV 764

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           TIS GI++    EP    I RAD+ALY +K  G+N V
Sbjct: 765 TISIGISQYLPDEPFERAIERADKALYNSKSRGKNSV 801


>gi|148378336|ref|YP_001252877.1| GGDEF/HD domain protein [Clostridium botulinum A str. ATCC 3502]
 gi|153931217|ref|YP_001382735.1| GGDEF/HD domain-containing protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935963|ref|YP_001386286.1| GGDEF/HD domain-containing protein [Clostridium botulinum A str.
           Hall]
 gi|153938239|ref|YP_001389700.1| GGDEF/HD domain-containing protein [Clostridium botulinum F str.
           Langeland]
 gi|148287820|emb|CAL81886.1| putative signaling protein [Clostridium botulinum A str. ATCC 3502]
 gi|152927261|gb|ABS32761.1| GGDEF/HD domain protein [Clostridium botulinum A str. ATCC 19397]
 gi|152931877|gb|ABS37376.1| GGDEF/HD domain protein [Clostridium botulinum A str. Hall]
 gi|152934135|gb|ABS39633.1| GGDEF/HD domain protein [Clostridium botulinum F str. Langeland]
          Length = 567

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 9/172 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  L   D L+ + NH  F  +L          NE LS++F DIDYFK  ND +GH  G
Sbjct: 189 KLESLVNKDGLTDVYNHRFFHDALSKEVIECEEKNEALSMIFIDIDYFKHYNDLYGHQKG 248

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-I 210
           D+V+  + + L         V R GGEEFA     +SEQ+A  +A  +RK IE +     
Sbjct: 249 DQVLKTIGEILKNNTRKEDIVARYGGEEFAVLLPNTSEQDAINIAEKIRKKIEYTYFEGE 308

Query: 211 SSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261
            + P+ ++T+S GI+   +K      +I  AD ALY AK   +NRV  ++ I
Sbjct: 309 ENQPNGNLTVSMGISVYPYKAKSDMELIKSADDALYRAKFFNKNRVEAYTSI 360


>gi|146339374|ref|YP_001204422.1| hypothetical protein BRADO2356 [Bradyrhizobium sp. ORS278]
 gi|146192180|emb|CAL76185.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
          Length = 379

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 82/166 (49%), Gaps = 8/166 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  LS  D L+G L+  AF S           +   L+    D+D+FK +NDN GH  GD
Sbjct: 157 LRNLSLRDGLTGALSRRAFRSEGERLRALAERHRHPLTCALLDVDHFKSVNDNHGHAAGD 216

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V++ +      V      +GRLGGEEF      +S  +A  +   +R  + +  I   S
Sbjct: 217 LVLSKVVGACQNVLRASDVIGRLGGEEFGIILPHTSLDDAMAVLEKMRSAVADLSIESPS 276

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           GP I IT S G  +    +P   ++ RAD+A+Y AK  GRN+V+ +
Sbjct: 277 GP-IRITASFGAVDLTPGQPFDAMLARADRAMYAAKNGGRNQVIAW 321


>gi|332142595|ref|YP_004428333.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552617|gb|AEA99335.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Alteromonas macleodii str. 'Deep ecotype']
          Length = 477

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 95/181 (52%), Gaps = 9/181 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIV-FFDIDYFKQIN 143
           +EL  +  ++ +L+ +D L+ + N  AF+ SL  +      N++  +V   D+D+FK IN
Sbjct: 285 RELRSANLKLEKLAYVDALTHIPNRRAFLDSLKKFLHLACRNKQAILVGIADVDHFKSIN 344

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGH  GD V+  ++  L  +F     +GR+GGEEFA      + + A  L    R+ I
Sbjct: 345 DQFGHAFGDDVLVTVAQTLQKLFRQEDCIGRIGGEEFAFCMSLPTPRAANQLLERFRETI 404

Query: 204 --ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              ++   I  G ++ ++I A   ++     I  ++  AD ALY AK SGRN V C  D+
Sbjct: 405 CHLHTTQPILKGRNVTVSIGAVYTQKTENTEIKALLKAADDALYKAKNSGRNAVECTLDV 464

Query: 262 E 262
           +
Sbjct: 465 D 465


>gi|170750974|ref|YP_001757234.1| diguanylate cyclase [Methylobacterium radiotolerans JCM 2831]
 gi|170657496|gb|ACB26551.1| diguanylate cyclase [Methylobacterium radiotolerans JCM 2831]
          Length = 281

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 90/172 (52%), Gaps = 16/172 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+  L+   F+       +   S +   S++  D+D FKQIND +GH  GD
Sbjct: 109 LRRLADTDHLTDALSRRRFLQICEEVWARTQSGDTPSSVLMLDLDRFKQINDRYGHSAGD 168

Query: 153 KVI-AFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            V+ AF+    D L  V      +GR+GGEEFA    G+   EA  +A  LR  +    +
Sbjct: 169 TVLKAFVETCRDSLRAVD----VIGRMGGEEFAILVTGTVLAEAQAIAEQLRHAVAQRPV 224

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +  GP + I++S G+A     E +S  + RAD ALY AK +GR+ V C ++
Sbjct: 225 RLEHGP-LPISVSIGLAAFGPSESMSATLRRADAALYAAKHAGRDCVRCAAE 275


>gi|117621244|ref|YP_855275.1| GGDEF/response regulator receiver domain-containing protein
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117562651|gb|ABK39599.1| GGDEF/response regulator receiver domain protein [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 269

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 101/191 (52%), Gaps = 13/191 (6%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNE 127
           ++ I LLL  + G +    F    ++ +L+  D L+GL N         A+      +  
Sbjct: 80  AVVILLLL--VMGMLALHQFNRSRKMRRLAMTDDLTGLHNRRQIQAKGQAWFKQAREHGR 137

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            LS++  DID+FKQ+ND  GH +GDKV+A ++  +     +   VGR GGEEF      +
Sbjct: 138 TLSVLQLDIDHFKQVNDTLGHHMGDKVLAEVASCVAAQLRSLDRVGRNGGEEFLVLLPDT 197

Query: 188 SEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERCH-KEPISTIIYRADQALY 245
           S  EA  +A  +R  +   +I+ +  G  +H++I  G A+     E    ++ RAD+A+Y
Sbjct: 198 SLDEAVEVAERIRHRVAQLRIDGMPEGQPVHVSI--GCAQYSPLDESFGDLVQRADEAMY 255

Query: 246 VAKKSGRNRVV 256
            AK++GRN+V+
Sbjct: 256 RAKQAGRNQVM 266


>gi|77919843|ref|YP_357658.1| response regulator/GGDEF domain-containing protein [Pelobacter
           carbinolicus DSM 2380]
 gi|77545926|gb|ABA89488.1| response regulator/FOG:GGDEF domain protein [Pelobacter
           carbinolicus DSM 2380]
          Length = 400

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 94/186 (50%), Gaps = 10/186 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L+E+     +  +LS  D L+GL N   F S L           ++LS++  DIDYFK++
Sbjct: 215 LEEVDGQREKAERLSLQDPLTGLPNRRHFFSVLREALEPGHRDGQELSLMLIDIDYFKEV 274

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD+V+A ++  +           R GGEEFA    G+S Q    +   L + 
Sbjct: 275 NDQLGHMAGDEVLAIVAHIIGDSVRQCDTACRYGGEEFAVLLPGASSQTVETIGRRLMEK 334

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260
           IE++ + ++    + +T+S G         IS   +I RAD+ALY AK SGRN++  +S 
Sbjct: 335 IESADL-LAGRSEVSLTVSVGFVSLSPGSKISIEEVIGRADRALYEAKNSGRNQLRMWSS 393

Query: 261 IENNTC 266
             +  C
Sbjct: 394 DSHGCC 399


>gi|117928368|ref|YP_872919.1| diguanylate cyclase [Acidothermus cellulolyticus 11B]
 gi|117648831|gb|ABK52933.1| diguanylate cyclase [Acidothermus cellulolyticus 11B]
          Length = 440

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 91/174 (52%), Gaps = 9/174 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +   +R D  +GL N + +       I+   S  E ++I+  D+D+FK +ND FGH +GD
Sbjct: 244 LRHAARTDPKTGLANAAYWREVAEREIARARSGGESVAILLVDVDHFKAVNDRFGHLIGD 303

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
            V+  ++  L        FVGR GGEEF     GS  ++AA+ A  +R+ I +  ++   
Sbjct: 304 DVLRAVAGGLTHGLRPRDFVGRFGGEEFVILLAGSDLEQAAVAAERVRQHIAHLTVDTPL 363

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            G  + +T+S G+A  R +   +  ++  AD ALY AK++GRN V   + +   
Sbjct: 364 HGDPVSVTVSVGVAAFRENGHSVLELLDAADAALYEAKRAGRNCVRVATGVRQQ 417


>gi|322804607|emb|CBZ02159.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 567

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 9/172 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  L   D L+ + NH  F  +L          NE LS++F DIDYFK  ND +GH  G
Sbjct: 189 KLESLVNKDGLTDVYNHRFFHDALSKEVIECEEKNEALSMIFIDIDYFKHYNDLYGHQKG 248

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-I 210
           D+V+  + + L         V R GGEEFA     +SEQ+A  +A  +RK IE +     
Sbjct: 249 DQVLKTIGEILKNNTRKEDIVARYGGEEFAVLLPNTSEQDAINIAEKIRKKIEYTYFEGE 308

Query: 211 SSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261
            + P+ ++T+S GI+   +K      +I  AD ALY AK   +NRV  ++ I
Sbjct: 309 ENQPNGNLTVSMGISVYPYKAKSDMELIKSADDALYRAKFFNKNRVEAYTSI 360


>gi|304311555|ref|YP_003811153.1| hypothetical protein HDN1F_19250 [gamma proteobacterium HdN1]
 gi|301797288|emb|CBL45508.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 597

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 84/157 (53%), Gaps = 10/157 (6%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N  A+        S        LS+   DID+FK+IND  GH  GDKV+  ++
Sbjct: 440 DALTGLPNRQAYDDYILREFSRWKRRGHALSMAVIDIDFFKRINDTLGHLRGDKVLKLVA 499

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINISSGPSIHI 218
            ++     +  FV R GGEEF  A L  ++Q+A   A   +R+ IE    N  +   + +
Sbjct: 500 REIQDCVRSEDFVARYGGEEF-VALLPDTDQDAGRTAMEKVRQHIEVCPFNFHNQRVV-V 557

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T+S G+A+    + I ++  RADQALY AK  GRNRV
Sbjct: 558 TVSIGVAQFQEGDSIESVFDRADQALYRAKGGGRNRV 594


>gi|156976625|ref|YP_001447531.1| hypothetical protein VIBHAR_05399 [Vibrio harveyi ATCC BAA-1116]
 gi|156528219|gb|ABU73304.1| hypothetical protein VIBHAR_05399 [Vibrio harveyi ATCC BAA-1116]
          Length = 480

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 9/171 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           ++L ++  ++ +L+  D L+ L N    I   ++L +    L+++ FDID FK IND FG
Sbjct: 297 RQLTMANQQLFELTLTDPLTKLYNRRHLIERLATLSNVRRNLTVMVFDIDDFKSINDQFG 356

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD+ I  +++    V    M + R+GGEEFA      S +EA +LA  +   +  S 
Sbjct: 357 HVVGDQAIIAVANTARTVIDERMTLARIGGEEFALVTASLSAEEAEVLARTICTQVHCSP 416

Query: 208 INISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +  G +I ++IS G A   +  ++P    +  ADQ +Y  K +G+NR V
Sbjct: 417 VTL-DGQTISVSISLGCAYYPKFDEQP---SLQDADQLMYRGKANGKNRAV 463


>gi|146341429|ref|YP_001206477.1| response regulator PleD [Bradyrhizobium sp. ORS278]
 gi|146194235|emb|CAL78257.1| response regulator PleD (with diguanylate cyclase and response
           regulator receiver domains) [Bradyrhizobium sp. ORS278]
          Length = 473

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 92/195 (47%), Gaps = 14/195 (7%)

Query: 81  LLGYISGSILKELFISYNRIS-----QLSRIDCLSGLLNH-------SAFISSLGSYNEK 128
           LL      I K  +  + R +     +++  D L+GL N        S       S  + 
Sbjct: 264 LLARARTQIRKRRYTDHLRDNVQNSIEMAITDALTGLHNRRYMETHLSTLADQAASRGKP 323

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+++  D+DYFK IND +GH  GD V+   + ++           R GGEEF      + 
Sbjct: 324 LALMMLDLDYFKSINDTYGHDAGDDVLREFAMRVRKSIRGIDLACRYGGEEFVIVMPETD 383

Query: 189 EQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHK-EPISTIIYRADQALYV 246
              A ++A  LR+ + N   ++  G   I +T+S GI+    K EPI+ ++ RAD ALY 
Sbjct: 384 LHVAGMVAERLRRSVANEPFSVHKGEKRIDVTVSIGISTLEQKGEPIADVMKRADTALYR 443

Query: 247 AKKSGRNRVVCFSDI 261
           AK  GRNR V  + +
Sbjct: 444 AKNEGRNRAVAIAPV 458


>gi|160900556|ref|YP_001566138.1| PAS/PAC sensor-containing diguanylate cyclase [Delftia acidovorans
            SPH-1]
 gi|160366140|gb|ABX37753.1| diguanylate cyclase with PAS/PAC sensor [Delftia acidovorans SPH-1]
          Length = 1015

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 88/172 (51%), Gaps = 9/172 (5%)

Query: 98   NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHP 149
            +++  L+  D L+G+ N  AF+  L    + L        +++  DID+FKQ+ND +GH 
Sbjct: 837  SQLETLALTDALTGIPNRRAFMERLTMELDHLRSGLVAHSTLIMLDIDHFKQVNDGYGHA 896

Query: 150  VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            VGD V+  L   +         VGRLGGEEFA     +  +     A  LR+ +    I+
Sbjct: 897  VGDIVLKELLASVAQEMRKEDMVGRLGGEEFAVLLSDTDAEVGLRRAESLRETVAARAID 956

Query: 210  ISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSD 260
                  +HITIS G+ E    +  +   + RAD ALY +K++GRN+   +S+
Sbjct: 957  AGLAGDLHITISLGVYELQRSDASAQGCLERADAALYYSKRNGRNQSTLWSE 1008


>gi|328958181|ref|YP_004375567.1| putative diguanylate cyclase or phosphodiesterase [Carnobacterium
           sp. 17-4]
 gi|328674505|gb|AEB30551.1| putative diguanylate cyclase or phosphodiesterase [Carnobacterium
           sp. 17-4]
          Length = 324

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 101/201 (50%), Gaps = 7/201 (3%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           L Y L+ +  LV+ S+ + L   +I   +LK L +  N   + +++D L+GL N  AF  
Sbjct: 119 LVYFLIYSSFLVLSSLVVILATAFIE-DLLKNLALYLNE-KEHAKMDFLTGLYNMRAFNK 176

Query: 121 SLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                      E  +++  DIDYFK INDN GH  G+ ++  L+  L +       V R+
Sbjct: 177 KWQRIQADKTIETTALMMIDIDYFKWINDNHGHENGNFILRQLATSLKIGAPDNELVYRV 236

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           GGEEF              +A ++R  I + +  + +G SI IT+S G+A     + +  
Sbjct: 237 GGEEFCLILNDLPYVAQKEIAENIRSSIADKEFVLENGTSIQITVSIGLAASAQSKDMKK 296

Query: 236 IIYRADQALYVAKKSGRNRVV 256
           +   AD+ LY+AK  GRN+V+
Sbjct: 297 LFRLADRCLYMAKNQGRNKVI 317


>gi|313498606|gb|ADR59972.1| GGDEF domain-containing protein [Pseudomonas putida BIRD-1]
          Length = 363

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 119/232 (51%), Gaps = 30/232 (12%)

Query: 44  FIANIFLFYIGLTPFY--GLEYILVENLSLVIISITISLLLGY----ISGSILKELFISY 97
           F   + + ++ L PFY   +E   +E   L+  ++ +S L+ Y    I  + L   ++S 
Sbjct: 139 FFCAMVITWVMLNPFYHTRIEPDALEGAMLISYAVFLSGLVSYSYLQIRKTKLHNFYLSK 198

Query: 98  NRISQLSRIDCLSGLLNHSAFISS------LGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
             + Q + +D L+ + N  +F++       + +  + L+++  DID FK++ND FGH VG
Sbjct: 199 VLLEQ-AYVDALTDIPNRRSFMAQADRQLRMATSGQYLAMI--DIDNFKRVNDRFGHDVG 255

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG----SSEQEAAILANDLRKIIENSQ 207
           D+V+  ++  +        F  RLGGEEFA    G     +EQ  A L   +R+      
Sbjct: 256 DEVLKRVALHIKTSMADQAF-ARLGGEEFAIFFEGLDQQGAEQRVAALCQRVRE------ 308

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +    P   +TIS G+A+    E ++T + RADQALY AK +G++R V +S
Sbjct: 309 -DTGEHP---VTISIGLAKINRGESLTTALVRADQALYEAKHTGKDRFVSWS 356


>gi|83643551|ref|YP_431986.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631594|gb|ABC27561.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 584

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 94/192 (48%), Gaps = 22/192 (11%)

Query: 83  GYISGSILKELFISY---NRISQLSR---IDCLSGLLNHSAFISSLGSY-------NEKL 129
           G+  GS+ + + +S    +R+++L R    D L+GL N   F     +         + L
Sbjct: 378 GFQIGSLTEMVLLSLALSSRVNELQRKTYTDALTGLFNRRHFDDKFATEFHRAQQSKQPL 437

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID FKQ ND +GH VGD  +  ++  L      P    R GGEEFA     +  
Sbjct: 438 TLLVIDIDCFKQFNDTYGHNVGDHALKEVARILAKGVRKPNCPCRYGGEEFAVILPNTDH 497

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYV 246
             A  LAN LR  +E       SG    ++IS G+A   H E   P + +  RAD ALY 
Sbjct: 498 DAAMSLANRLRVKVEE---ETESG--YKLSISVGVASMAHDEFDCP-NKLFERADYALYT 551

Query: 247 AKKSGRNRVVCF 258
           AK+ GRNRV+ +
Sbjct: 552 AKQQGRNRVIDY 563


>gi|83589092|ref|YP_429101.1| diguanylate cyclase [Moorella thermoacetica ATCC 39073]
 gi|83572006|gb|ABC18558.1| diguanylate cyclase (GGDEF domain) [Moorella thermoacetica ATCC
           39073]
          Length = 357

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 85/160 (53%), Gaps = 8/160 (5%)

Query: 107 DCLSGLLNHSAFISS----LGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+G+ N+  F+ +    L S  +   L+++  DIDYFK+IND +GH  G++V+A L+ 
Sbjct: 189 DDLTGIYNYRYFVQAFSNLLNSRQQPRYLAVLMLDIDYFKEINDAYGHLTGNRVLAELAT 248

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            L         V R GGEEFA     +    A  +A  +RK I       + G +IH+T+
Sbjct: 249 ILKECTREQDVVTRFGGEEFALILPDTDYHGALQVAERIRKAIAEHTFQ-AEGTAIHVTV 307

Query: 221 SAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           SAG+A           II RAD+ALY AK +GRN V  + 
Sbjct: 308 SAGVAVWPVDGTDKKDIIARADRALYQAKTTGRNSVCAYQ 347


>gi|251766786|ref|ZP_04819808.1| diguanylate cyclase [Burkholderia mallei PRL-20]
 gi|243064671|gb|EES46857.1| diguanylate cyclase [Burkholderia mallei PRL-20]
          Length = 507

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 14/169 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +L+R D L+GL N  AF  +L S           LS++F DID FK  ND++GH  G
Sbjct: 335 RLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAG 394

Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D V+  +   L V V      V R GGEEF      +  + AA +A  +R+ + +  I  
Sbjct: 395 DDVLREVGGCLAVNVRRAADDVARYGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEH 454

Query: 211 SSGPSIHITISAGIAER----CHKEPISTIIYRADQALYVAKKSGRNRV 255
              P   +T+S G+        H +  +T++  AD ALY AK +GRNRV
Sbjct: 455 VRSPYARVTVSIGLVTSHEHIAHSD--ATLVKMADAALYQAKSTGRNRV 501


>gi|237730295|ref|ZP_04560776.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226905834|gb|EEH91752.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 462

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 9/169 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS-------SLGSYNEK-LSIVFFDIDYFKQINDNFGHPVG 151
           + Q +  D L+ LLN   FI        SL  +  K  ++   DIDYFKQINDN+GH  G
Sbjct: 295 VKQENGKDSLTQLLNRR-FIPTIMRREISLALHARKPFTLAMLDIDYFKQINDNYGHNTG 353

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D  +  ++  +     +  +V R GGEEF    + S + +A+I+   LR  I    +  S
Sbjct: 354 DMTLKNVAAVIYDHIRSSDYVFRYGGEEFMILLVESDKSQASIILETLRMKIAEMCMAAS 413

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  S  IT+S GIAE  +      ++ +AD+ALY+AK +GR+R+  + +
Sbjct: 414 AAESFSITVSIGIAEYDYHPDYKQLVDKADRALYLAKSNGRDRIEVYQE 462


>gi|153831702|ref|ZP_01984369.1| ggdef family protein [Vibrio harveyi HY01]
 gi|148872212|gb|EDL71029.1| ggdef family protein [Vibrio harveyi HY01]
          Length = 337

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 86/155 (55%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D LS L N  AF S L      N+ +++V  DID+FK  NDN+GH  GD VI  ++ +L 
Sbjct: 181 DGLSNLYNRRAFDSDLQMLIDSNQAMTLVMLDIDHFKAFNDNYGHLFGDTVIKAIARRLQ 240

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH-ITIS 221
                 +   R GGEEFA      S +     A+ LR++IE  ++ +  SG  +  IT S
Sbjct: 241 QSCRDGISAYRFGGEEFALIVPNKSLRIGRQYADTLRRMIEKLRVRDKRSGSQVQSITAS 300

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+AE    + + +++ +AD+ LY AK+ GRNRV+
Sbjct: 301 FGVAEYEVGDTLDSLVNKADKQLYEAKQLGRNRVM 335


>gi|258619914|ref|ZP_05714955.1| GGDEF family protein [Vibrio mimicus VM573]
 gi|258587784|gb|EEW12492.1| GGDEF family protein [Vibrio mimicus VM573]
          Length = 323

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 117/264 (44%), Gaps = 30/264 (11%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           +W C       F P  F I+ S  F+   +++  I              G+ Y  ++N  
Sbjct: 69  VWSC-------FVPILFYIFTSARFAFLTSSLFLILQ-----------SGIVYWQLQNEP 110

Query: 71  LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSY 125
           L+  S+ + L   YI   ++  ++    R     +  L+  D L+   N  +  +S   +
Sbjct: 111 LISWSVLLHLSFAYIGIWVVSHVYEQNRRKIENSLLYLASRDPLTSAHNRLSLTTSFQHF 170

Query: 126 NE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            +      LS++  D+DYFK IND FGH  GDKV+   +  L  V G      R+GGEEF
Sbjct: 171 EQFNDQTTLSLLVIDLDYFKSINDQFGHDTGDKVLIETTRLLAQVVGDNNLY-RIGGEEF 229

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                  S ++A  +   LR II +  I       + +TIS G+ E    + ++ ++  A
Sbjct: 230 CVTLFDQSLEQAERVCERLRAII-SQHIFAFGDKRVQVTISIGVCEYQPGDQLNDLLKFA 288

Query: 241 DQALYVAKKSGRNRVVCFSDIENN 264
           D  LY AKK+GRN+V  F   +  
Sbjct: 289 DIELYRAKKAGRNQVRLFKHAQTQ 312


>gi|255092109|ref|ZP_05321587.1| putative signaling protein [Clostridium difficile CIP 107932]
 gi|255649628|ref|ZP_05396530.1| putative signaling protein [Clostridium difficile QCD-37x79]
          Length = 220

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 82/153 (53%), Gaps = 10/153 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ + N  +F      Y EK    ++V  DID FK INDN+GH  GD VI  +++ + 
Sbjct: 73  DGLTNVYNRKSFDIMYEKYREKDDNFALVMIDIDNFKLINDNYGHKFGDTVIKGITNTIC 132

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
           V+      V R GGEEF+      S +E A + +++R  I N + N      + +TISAG
Sbjct: 133 VMLEQDDKVFRYGGEEFSVLIRNKSGEEVADIIDNIRVAIANKKWN----DDVTVTISAG 188

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +A   H      ++  AD+ LY AK+ GRN+VV
Sbjct: 189 VA---HISDSKDVLEEADKNLYKAKQLGRNKVV 218


>gi|157962146|ref|YP_001502180.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157847146|gb|ABV87645.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
          Length = 350

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 86/160 (53%), Gaps = 10/160 (6%)

Query: 107 DCLSGLLNHSAF----ISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N  AF    IS + S+N    + S++  DIDYFK+ ND  GH +GDKV+A+++
Sbjct: 182 DQLTSLNNRRAFDKEVISHIDSFNLSNVESSLLVVDIDYFKKFNDVHGHLIGDKVLAYVA 241

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG---PSI 216
             L        FV R GGEEF      +S Q+A  +A ++R  I    + I      P  
Sbjct: 242 QALKNAVKGEDFVARYGGEEFVVLLPNTSHQDAHKVAENIRIKIAGRNLTIGKEKKLPLG 301

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++T+S G+A     +   +   RAD+ALY AK SGRN V+
Sbjct: 302 NVTVSVGVASLKASDDKDSYFIRADEALYRAKSSGRNCVI 341


>gi|153827501|ref|ZP_01980168.1| diguanylate cyclase [Vibrio cholerae MZO-2]
 gi|149738577|gb|EDM52932.1| diguanylate cyclase [Vibrio cholerae MZO-2]
          Length = 310

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 9/170 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  LS +D L+ + N  +F       I   G +    S++ FDID FK +ND  GHP 
Sbjct: 134 QRLKILSEMDTLTEVHNRRSFSSLLSQSIKEYGIHGVTFSLILFDIDKFKWVNDTLGHPA 193

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VI ++   +         +GRLGGEEF      S+  +A  +A  LR  +  +   +
Sbjct: 194 GDDVIKYVVKVIQQELHFTDVIGRLGGEEFGIILRDSNHDKAFKVAEKLRIRLAETMCEL 253

Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +  S+ +TIS G+ +   +   +  +I RAD+A+Y +K  GRN+  C+ 
Sbjct: 254 ETC-SVRVTISLGVTQIMPNDSSMRHLISRADKAMYYSKMHGRNQTCCYE 302


>gi|120612636|ref|YP_972314.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
 gi|120591100|gb|ABM34540.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
          Length = 591

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 115/224 (51%), Gaps = 31/224 (13%)

Query: 57  PFY--GLEYILVENLSLVIISITISLL-----LGYISGSI---LKELFISYNRISQ---- 102
           P Y  G + + V  L+    S+T SLL     L  ++ S+   ++E  ++ ++ +Q    
Sbjct: 364 PRYPDGTDTLEVAQLNRSFQSMTASLLEREQELSRLNTSLENQVRERTLALHQANQELEN 423

Query: 103 LSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N   F  +L +Y         + +++  D D+FK++ND  GH  GD V+
Sbjct: 424 LAVRDPLTGLYNRRRFDEALQAYTARCRELGHRFALMIVDADHFKRVNDTHGHQTGDAVL 483

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGP 214
             L+  +     +  F+ R GGEEF          +E   +A  +R  + ++       P
Sbjct: 484 RHLAGVITGCVRSTDFIARFGGEEFVVLMPEPRDREEGRFVAEKIRLAVGHTPF-----P 538

Query: 215 SI-HITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255
            + H+T+S G+A  CH   EP++TI+ RAD+ALY AK+ GR+RV
Sbjct: 539 GVGHLTVSIGLAF-CHGGGEPLATILERADKALYQAKEEGRDRV 581


>gi|85711644|ref|ZP_01042701.1| Signaling protein with membrane-bound sensor domain and GGDEF
           domain [Idiomarina baltica OS145]
 gi|85694504|gb|EAQ32445.1| Signaling protein with membrane-bound sensor domain and GGDEF
           domain [Idiomarina baltica OS145]
          Length = 394

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 87/168 (51%), Gaps = 16/168 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
           ++ +L+  D L+ L   S FI    +  E+         ++  D+D+FKQIND +GH  G
Sbjct: 228 QLRRLAERDTLTELDTRSHFIKRAEALLERALRENTAFCLLMIDVDHFKQINDTWGHTRG 287

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++  +         VGR GGEEF  A   +  +EA  LA  L      + +N  
Sbjct: 288 DEVLKQVAKTIRQSLRRVDVVGRFGGEEFIVAMPNTHHKEAVKLAQRL-----TANVNAI 342

Query: 212 SGPS----IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             PS    + ++I+ GIA + ++  +  +I RAD+ LY  K++GRNRV
Sbjct: 343 ELPSPLNQVSVSITVGIAMKSNERSLDLLIQRADEMLYKGKRNGRNRV 390


>gi|260459132|ref|ZP_05807387.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075]
 gi|259034686|gb|EEW35942.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075]
          Length = 383

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 102/200 (51%), Gaps = 13/200 (6%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-----S 120
            E LSL+++  +++ + G +S ++ +     ++R + L+  D L+GLLN  A       +
Sbjct: 185 AEELSLIVVIASMTGI-GALSLALNQGRLARHHRRNALT--DPLTGLLNRRALFDMHGNA 241

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            +G++    ++V FD+D FK IND FGH  GD+V+   + +L           R+GGEEF
Sbjct: 242 PVGAFT---AVVVFDLDNFKTINDEFGHAAGDEVLRVFASELAGNLRQTDVAARMGGEEF 298

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYR 239
           A     +  +     A  +R      +I    G S+  T+SAG A      P    ++  
Sbjct: 299 ALVLKRTLPETVEAAAERIRTAFAARRIETEMG-SLTCTVSAGFAFGAKDGPSFDKVLSA 357

Query: 240 ADQALYVAKKSGRNRVVCFS 259
           AD+ALY AK+ GRNRVV  S
Sbjct: 358 ADKALYDAKRGGRNRVVIAS 377


>gi|227327225|ref|ZP_03831249.1| putative signaling protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 235

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 82/151 (54%), Gaps = 4/151 (2%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+ + N  A I  +    E+   +++  DID+FKQ+ND +GHP GD VI  L  ++  
Sbjct: 84  DPLTSVYNRGAIIEHINHALERNQAALIVLDIDHFKQVNDTYGHPTGDAVICDLVSRVQQ 143

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           +  T   +GR+GGEEF     G +  +A  LA+ L + +  +++ +S  P   +T S G+
Sbjct: 144 ILNTTSSIGRVGGEEFTILLEGHTLMQAVSLASRLHQDL--NRMPLSVLPQQRVTASFGV 201

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +    K     +   AD ALY AK+ GRNRV
Sbjct: 202 SWAPQKTRFDALYGAADAALYQAKEKGRNRV 232


>gi|218549979|ref|YP_002383770.1| hypothetical protein EFER_2664 [Escherichia fergusonii ATCC 35469]
 gi|218357520|emb|CAQ90159.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469]
 gi|325498354|gb|EGC96213.1| hypothetical protein ECD227_2451 [Escherichia fergusonii ECD227]
          Length = 472

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 9/161 (5%)

Query: 107 DCLSGLLNHSAFIS-------SLGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+ LLN   FI        S+  ++ K  ++   DIDYFKQIND +GH  GD  +  +
Sbjct: 307 DSLTQLLNRR-FIPTIMRREISIALHSRKPFALAMLDIDYFKQINDRYGHNAGDNTLKNV 365

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           S  +     +  +V R GGEEF    + +   +A I+  +LR  +   +I  S+  S  +
Sbjct: 366 SAMIYEHIRSSDYVFRYGGEEFMILLVETELSQAKIILENLRNKMAGLRIQASASESFSV 425

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           T+S G+AE  +      +I +AD ALY AK  GRNRV  F 
Sbjct: 426 TVSIGVAEYDYHPDYKLLIEKADSALYYAKSQGRNRVEVFQ 466


>gi|26990165|ref|NP_745590.1| GGDEF domain-containing protein [Pseudomonas putida KT2440]
 gi|24985103|gb|AAN69054.1|AE016538_3 GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 363

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 119/232 (51%), Gaps = 30/232 (12%)

Query: 44  FIANIFLFYIGLTPFY--GLEYILVENLSLVIISITISLLLGY----ISGSILKELFISY 97
           F   + + ++ L PFY   +E   +E   L+  ++ +S L+ Y    I  + L   ++S 
Sbjct: 139 FFCAMVITWVMLNPFYHTRIEPDALEGAMLISYAVFLSGLVSYSYLQIRKAKLHNFYLSK 198

Query: 98  NRISQLSRIDCLSGLLNHSAFISS------LGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
             + Q + +D L+ + N  +F++       + +  + L+++  DID FK++ND FGH VG
Sbjct: 199 VLLEQ-AYVDALTDIPNRRSFMAQADRQLRMATSGQYLAMI--DIDNFKRVNDRFGHDVG 255

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG----SSEQEAAILANDLRKIIENSQ 207
           D+V+  ++  +        F  RLGGEEFA    G     +EQ  A L   +R+      
Sbjct: 256 DEVLKRVALHIKTSMADQAF-ARLGGEEFAIFFEGLDQQGAEQRVAALCQRVRE------ 308

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +    P   +TIS G+A+    E ++T + RADQALY AK +G++R V +S
Sbjct: 309 -DAGEHP---VTISIGLAKVDRGESLTTALVRADQALYEAKHTGKDRFVSWS 356


>gi|83858472|ref|ZP_00951994.1| GGDEF family protein [Oceanicaulis alexandrii HTCC2633]
 gi|83853295|gb|EAP91147.1| GGDEF family protein [Oceanicaulis alexandrii HTCC2633]
          Length = 333

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 93/176 (52%), Gaps = 9/176 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           + +L  +  ++ + +  D L+G+ N   F  S+     +        S+V  DID+FK+ 
Sbjct: 143 VNQLRSNLEKVREEAMTDALTGVANRKRFDESMRKSRREADLTGAPFSLVLCDIDHFKRF 202

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD++I F+S  L         V R GGEEF      +S Q+A  +A  +R++
Sbjct: 203 NDTWGHQTGDQIIRFVSACLARYASDHHVVARYGGEEFGIVMPNTSLQDATEIAEKIRQV 262

Query: 203 IENSQ-INISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +E+ + +  S+   + +IT+S G+++    E +  +I R D  LY +K+ GRNRV 
Sbjct: 263 VESKRLLRKSTNEDLGNITVSMGVSQFRPSEVVECLIERCDANLYKSKQKGRNRVT 318


>gi|229527885|ref|ZP_04417276.1| hypothetical protein VCG_000959 [Vibrio cholerae 12129(1)]
 gi|229334247|gb|EEN99732.1| hypothetical protein VCG_000959 [Vibrio cholerae 12129(1)]
          Length = 312

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 9/170 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  LS +D L+ + N  +F       I   G +    S++ FDID FK +ND  GHP 
Sbjct: 136 QRLKILSEMDTLTEVHNRRSFSSLLSQSIKEYGIHGVTFSLILFDIDKFKWVNDTLGHPA 195

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VI ++   +         +GRLGGEEF      S+  +A  +A  LR  +  +   +
Sbjct: 196 GDDVIKYVVKVIQQELHFTDVIGRLGGEEFGIILRDSNHDKAFKVAEKLRIRLAETMCEL 255

Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +  S+ +TIS G+ +   +   +  +I RAD+A+Y +K  GRN+  C+ 
Sbjct: 256 ETC-SVRVTISLGVTQIMPNDSSMRHLISRADKAMYYSKMHGRNQTCCYE 304


>gi|319789147|ref|YP_004150780.1| diguanylate cyclase [Thermovibrio ammonificans HB-1]
 gi|317113649|gb|ADU96139.1| diguanylate cyclase [Thermovibrio ammonificans HB-1]
          Length = 556

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 79/158 (50%), Gaps = 10/158 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N       L    +K       +++   DID+FK+IND +GH  GD V+  L+
Sbjct: 401 DYLTGLFNRQYLFDYLKETLKKAEEEGFPVAVALIDIDFFKRINDTYGHLTGDCVLKELA 460

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L   F     V R GGEEF      S+ + A      +R+  E +         + +T
Sbjct: 461 KILKGSFRESDCVARYGGEEFVVVMPHSNLENACKKMERVRQKTEETPF---CEDKLKVT 517

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            SAG+ E    E I +++ RAD+ LY AKKSGRNRVVC
Sbjct: 518 FSAGVTEFKPGESIESLLERADKNLYEAKKSGRNRVVC 555


>gi|262377167|ref|ZP_06070392.1| LOW QUALITY PROTEIN: GGDEF family protein [Acinetobacter lwoffii
           SH145]
 gi|262307905|gb|EEY89043.1| LOW QUALITY PROTEIN: GGDEF family protein [Acinetobacter lwoffii
           SH145]
          Length = 329

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 91/181 (50%), Gaps = 9/181 (4%)

Query: 89  ILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSYN----EKLSIVFFDIDYF 139
           +L E+ +S  R     I QLS+ID L+ L N  +    L   N       ++V  D+D+F
Sbjct: 140 VLFEILLSQWRHREQLIKQLSQIDPLTNLFNRRSINQCLDKLNAVATPNYALVLLDLDHF 199

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND++GH  GD+ +  +S  L         VGR GGEEF      +S ++A  +A   
Sbjct: 200 KKINDHYGHHKGDETLVEVSAVLNQQLRESDVVGRFGGEEFILVLKNTSLEKAEQVAERC 259

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           R  I+  QI    G  I +T S GIA    +     ++ +ADQALY AK  GRN    ++
Sbjct: 260 RIAIQQLQIFSDEGELIPVTASFGIAISSAELRPQQLLSQADQALYQAKAGGRNLAKAYA 319

Query: 260 D 260
           +
Sbjct: 320 E 320


>gi|254507211|ref|ZP_05119348.1| ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219549921|gb|EED26909.1| ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 338

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 86/162 (53%), Gaps = 5/162 (3%)

Query: 100 ISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           + Q +  D L+ L N  +F   I +L    +K+ +V  DID+FK  NDN+GH  GD VI 
Sbjct: 175 VQQDALFDSLTSLYNRRSFDNDIKTLCQTGQKICLVLADIDHFKSYNDNYGHLFGDAVIK 234

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++ +L +     +   R GGEEFA        + A   A+ LR+ IE   I      S+
Sbjct: 235 GIAKRLHINARDGVHAYRFGGEEFALIVPNKQLRIARQYADSLRRSIEKLSIKDKRSGSL 294

Query: 217 --HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +IT S G+AE    E   ++I RAD+ LY AK+ GRNRV+
Sbjct: 295 VANITASFGVAELEENESAESLIERADKLLYEAKQLGRNRVM 336


>gi|184159860|ref|YP_001848199.1| GGDEF domain-containing protein [Acinetobacter baumannii ACICU]
 gi|183211454|gb|ACC58852.1| GGDEF domain protein [Acinetobacter baumannii ACICU]
          Length = 384

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 95/183 (51%), Gaps = 8/183 (4%)

Query: 89  ILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFK 140
           IL E+ ++  R     I +LS+ID L+ +LN  +  + L + +E+    +++  DID+FK
Sbjct: 198 ILFEILLTQWRQRETYIQRLSQIDPLTNVLNRRSLNTHLEALHEQQFDYAVILLDIDHFK 257

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+V+  ++  L         +GR GGEEF      +   +A  +A   R
Sbjct: 258 KINDIYGHHQGDQVLIEIAQCLSENLRNEDIIGRFGGEEFILLLPHTDIIQAEKIAERCR 317

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + ++   I  +    IH++ S GI+          +I +ADQALY  K SGRN+V  F  
Sbjct: 318 QALQELTIFNNQNIQIHVSASFGISSSAFANDPYLVIRQADQALYAVKASGRNQVRTFHQ 377

Query: 261 IEN 263
           +  
Sbjct: 378 LPQ 380


>gi|153008283|ref|YP_001369498.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188]
 gi|151560171|gb|ABS13669.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188]
          Length = 401

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 79/158 (50%), Gaps = 9/158 (5%)

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S  D LS LLN   F       I       + LS+V  DID+FK IND  GH +GD+VIA
Sbjct: 222 SETDQLSTLLNRRGFEFRAEAAIEKSKRMRQALSLVLCDIDHFKAINDTHGHALGDRVIA 281

Query: 157 FLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             S +L            R+GGEEFA    G++ Q A   A+  R +  +  I   +G  
Sbjct: 282 AFSAELRKAANAKGGIAARIGGEEFAIILPGNTIQSAWRFADKTRLVCRDIHIPGRNG-G 340

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           I  T+S GIAE    +  S +  RAD ALY AKK GRN
Sbjct: 341 IEFTVSFGIAEMEFDDVFSDLYKRADGALYEAKKGGRN 378


>gi|121728900|ref|ZP_01681908.1| GGDEF family protein [Vibrio cholerae V52]
 gi|121628828|gb|EAX61289.1| GGDEF family protein [Vibrio cholerae V52]
          Length = 469

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 92/170 (54%), Gaps = 6/170 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
           ++L  +  ++S L++ D L+   N  +F   L +   +   L+++ FDID FK IND FG
Sbjct: 297 QQLEEANQKLSYLAKTDSLTDTANRRSFFEHLEAEQTRSGSLTLMVFDIDDFKTINDRFG 356

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD  I F+   +     +  +  R+GGEEFA  A G + +E+  LA  + + +   +
Sbjct: 357 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 416

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             +++  S+ +TIS G A   H   P S  ++ AD  +Y  K++G+N+VV
Sbjct: 417 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 464


>gi|148545403|ref|YP_001265505.1| diguanylate cyclase [Pseudomonas putida F1]
 gi|148509461|gb|ABQ76321.1| diguanylate cyclase [Pseudomonas putida F1]
          Length = 645

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG----SYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q + +D L+GL N +A+   +      + E    L++   D+D+FK+INDN+GH  GDKV
Sbjct: 483 QKALLDPLTGLPNRAAWSEQVEREMLDWQENGGHLAMAILDLDHFKRINDNYGHLAGDKV 542

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++DQL        F+ R GGEEF      ++   AA +A  LR  +E    +   G 
Sbjct: 543 LKIVADQLRKRLRGRDFIARFGGEEFVLLLPQTTPAVAAQMAEVLRATVEACPFHF-KGE 601

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT S G+      E    ++ RAD ALY AK+ GRNRV
Sbjct: 602 RVVITTSIGLGAFRSGERSDQVLKRADAALYRAKEQGRNRV 642


>gi|332533626|ref|ZP_08409486.1| hypothetical protein PH505_as00180 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036907|gb|EGI73367.1| hypothetical protein PH505_as00180 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 317

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 107/208 (51%), Gaps = 26/208 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGSYN 126
           L +V+IS    LLL  +S  IL  L  S +   +S L+  D L+ L N   F ++  +  
Sbjct: 113 LQIVLIS---HLLLATLSALILPFLLFSNSEYTLSNLANTDSLTQLFNRRGFFNNAKAVL 169

Query: 127 EK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
           ++       +SI+  DID+FK +ND +GH  GD+ I +++  +   F       R+GGEE
Sbjct: 170 KQPNNNDINVSIIILDIDFFKHVNDKYGHDTGDQAIKWIAQHIKEQFIDEGICARIGGEE 229

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGP------SIHITISAGIAERCH-KEP 232
           FA      S + A   A  LR+       NIS  P       I +++SAG++   + K  
Sbjct: 230 FAILLPDYSLRAAKEYAEHLRE-------NISKHPFYYQNAHIKLSVSAGVSHSVNGKMS 282

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  ++  AD+ LY+AK++GR++VV F +
Sbjct: 283 VKDLLSLADKRLYLAKETGRDKVVSFDE 310


>gi|307824446|ref|ZP_07654671.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
 gi|307734430|gb|EFO05282.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
          Length = 351

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 9/165 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           + ++ D L+GLLN  AF   L  Y E       +L ++  DID+FKQ+ND FGH +GD V
Sbjct: 183 ETAKTDALTGLLNRRAFDQKLNEYIEIHKQNDVELCLLILDIDHFKQVNDTFGHQMGDNV 242

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213
           + + ++ +           R GGEE A     +   +A  +A  +R  +    + +  S 
Sbjct: 243 LRYTANLMKQHITEHHCAARYGGEEMAIIMPNTPLNKAMEIAEKIRTSLAQHPLKLKGSK 302

Query: 214 PSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            SI  +TIS G++     + I ++I RAD A+Y AK +GRN+V+ 
Sbjct: 303 KSIGKVTISIGVSSFKINDSIESLIERADMAMYRAKDNGRNQVMA 347


>gi|228918028|ref|ZP_04081558.1| GGDEF domain protein [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228841616|gb|EEM86730.1| GGDEF domain protein [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 351

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 24/233 (10%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91
           S+F   + F  N++  +I   P      +L +++S+V + +  S +  YI+      +L+
Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQ 179

Query: 92  --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
             ELF    ++ Q + ID L+GL N   F       I +    N  L ++  DID+FK +
Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSV 236

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GHP GD+V+  +   L  V   P    R GGEEFA             +   +R  
Sbjct: 237 NDTYGHPAGDEVLKQIGRILREVSMFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAA 296

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E     +  G  I IT+S GI+   +++     I  AD ALY +K++GRN+V
Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPERFIQAADDALYYSKRNGRNQV 347


>gi|226953371|ref|ZP_03823835.1| GGDEF domain-containing protein [Acinetobacter sp. ATCC 27244]
 gi|294651925|ref|ZP_06729214.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|226835909|gb|EEH68292.1| GGDEF domain-containing protein [Acinetobacter sp. ATCC 27244]
 gi|292822157|gb|EFF81071.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 397

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 126/276 (45%), Gaps = 27/276 (9%)

Query: 13  LCHEKNL-ESFSPHTFMIY-------FSIFFSIFIATVIFIANIFLFYIGLTPFYG-LEY 63
           LCH   L  SFSP T ++Y         +F    I   +  A I L +  +   YG L+Y
Sbjct: 119 LCHTSYLIGSFSPATMVVYVSVVAVGLVLFNRKMIYCALIPATIALLFCNILSLYGVLQY 178

Query: 64  ILVENLSLV---------IISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCL 109
             + N  ++         + S+   LL   I+   L E+ ++  R     I  LSR+D L
Sbjct: 179 APLFNPKILNQAEMHPFWVGSMLFFLLPILIACLFLFEILLTQWRTRETAIQALSRLDPL 238

Query: 110 SGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           + ++N  +  + L   N++     S+V  D+D+FK IND FGH +GD+V+  ++  L   
Sbjct: 239 TNVMNRRSISNHLEKLNKQPNSFYSVVLLDLDHFKNINDEFGHSMGDQVLVHVAKCLSNN 298

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                 +GR GGEEF      ++  +A  +A   R  I +            ++ S GI+
Sbjct: 299 VRDQDLIGRFGGEEFILLLPNTTAIQAKNVAERCRLAIADMCFIAEDQQQFSVSASFGIS 358

Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              +      ++ +ADQALY  K SGRN +  F D+
Sbjct: 359 SSLNANEPHLVVSQADQALYAVKASGRNNIQIFGDL 394


>gi|197123948|ref|YP_002135899.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter sp. K]
 gi|196173797|gb|ACG74770.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter sp. K]
          Length = 322

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 95/186 (51%), Gaps = 17/186 (9%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           ++  +L  +  R+ + +  D L+GL N  AF   L         Y++ +S++  D+D+FK
Sbjct: 126 TLQDQLRETQRRLREQTLTDDLTGLKNRRAFDERLQEEFRRAHRYSDPVSLIMIDLDHFK 185

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GHP GD V+   S+QL      P    R GGEEFA     +    A  +A  + 
Sbjct: 186 LVNDRYGHPFGDLVLRGASEQLRASTRDPDICARYGGEEFAVILPKTHLSGALAVAERIW 245

Query: 201 KIIENSQINI---SSGP--SIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGR 252
           K +      +   S+GP  SI +T S GIA    K+   P + + Y AD+ALY AKK+GR
Sbjct: 246 KELSARSYPVPAGSTGPETSIQVTASMGIAFYPSKDIGSPEALVRY-ADEALYQAKKAGR 304

Query: 253 NRVVCF 258
           N  +C 
Sbjct: 305 N-TICL 309


>gi|115525386|ref|YP_782297.1| response regulator PleD [Rhodopseudomonas palustris BisA53]
 gi|115519333|gb|ABJ07317.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris BisA53]
          Length = 457

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 85/167 (50%), Gaps = 9/167 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N     S L       G+    L+++  DIDYFK+IND++GH  GD V
Sbjct: 290 EMAITDGLTGLHNRRYMESHLATLAEQAGARGRPLALMMLDIDYFKKINDSYGHDAGDDV 349

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   + ++           R GGEEF      +    A ++A  LR+ I      I  G 
Sbjct: 350 LREFAVRIKKSIRGIDLACRYGGEEFVVVMPETDAHVAGLVAERLRRAIAGEPFAIEKGA 409

Query: 215 -SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I +TIS G++    K EP++ ++ RAD ALY AK  GRNRVV  +
Sbjct: 410 RRIEVTISIGLSTLEKKGEPVADLLKRADVALYRAKHDGRNRVVAAA 456


>gi|328470536|gb|EGF41447.1| GGDEF domain-containing protein [Vibrio parahaemolyticus 10329]
          Length = 456

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 10/148 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL-----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GLLN   F  S   +  +L     S++  D D  K+IND +GH VGD+VI  ++D 
Sbjct: 308 DDLTGLLNRRVFKDS--EFKRRLKTAPYSVIAIDGDRIKRINDRYGHHVGDEVIEIIADA 365

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +  VF T  ++ R GG+EF A   G S  ++++LA  LR +++++++       I +++S
Sbjct: 366 MRKVFRTSDYLVRTGGDEFIAILPGCSISQSSMLAKKLRSVVKDNRLKT---LDIEVSVS 422

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKK 249
            G+A     E +  +I RAD+ LY  KK
Sbjct: 423 TGVAVNESHESLQDVIVRADEDLYEMKK 450


>gi|254293944|ref|YP_003059967.1| diguanylate cyclase [Hirschia baltica ATCC 49814]
 gi|254042475|gb|ACT59270.1| diguanylate cyclase [Hirschia baltica ATCC 49814]
          Length = 347

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 84/163 (51%), Gaps = 9/163 (5%)

Query: 107 DCLSGLLNHSAFISSLGSY-NEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N   F   L    NE L       ++  DID+FK  ND +GH  GD+VI F++
Sbjct: 181 DGLTGVANRKQFDEVLQRRINESLESGSDLCLIICDIDFFKNFNDTWGHQTGDQVIRFVA 240

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INISSG-PSIH 217
           + L         V R GGEEFA     +    A   A  +RK IE+ + I  S+G P   
Sbjct: 241 NSLAQKAVNESLVARYGGEEFAIIMPRTILDTAFEFAESVRKTIESKKLIRRSTGEPLGQ 300

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +T+S GIA     E  S +I RAD  LY +K++GRNR+   SD
Sbjct: 301 VTVSFGIANYRSGEGASNLIERADHCLYHSKQTGRNRITLESD 343


>gi|238752589|ref|ZP_04614062.1| Diguanylate cyclase [Yersinia rohdei ATCC 43380]
 gi|238709180|gb|EEQ01425.1| Diguanylate cyclase [Yersinia rohdei ATCC 43380]
          Length = 350

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 95/185 (51%), Gaps = 14/185 (7%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIV 132
           LLG ++    + L  +   + ++S  D L+GL N        H+ F  S   Y    +++
Sbjct: 166 LLGLVTYRTARRLAENKEELLRISVRDGLTGLYNRRHWEHQLHNQF-DSCRRYQHGATLI 224

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQE 191
             DID FK IND FGH VGD+ I  L+++L++       VGR GG+EF A    ++ EQ 
Sbjct: 225 LLDIDNFKSINDTFGHAVGDEAITVLAEELLLGLRAIDIVGRYGGDEFGAILPNTTAEQT 284

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250
             +L     K+   + +  +  P + + +SAGIA+  H        +  AD ALY+AK +
Sbjct: 285 REVLVRIQEKL---AGLVFTQAPLLQLRVSAGIADYRHDMINYQQWLKAADSALYLAKDN 341

Query: 251 GRNRV 255
           GRNR+
Sbjct: 342 GRNRI 346


>gi|309701784|emb|CBJ01096.1| putative diguanylate cyclase [Escherichia coli ETEC H10407]
          Length = 296

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 10/157 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+ + + S    +L S + K    L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 130 DFLTQVYSRSGLYEALKSLSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 189

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 190 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 248

Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254
           G+       R   +  + ++  AD  LY +KK GRNR
Sbjct: 249 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 285


>gi|303325683|ref|ZP_07356126.1| sensory box/GGDEF family protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863599|gb|EFL86530.1| sensory box/GGDEF family protein [Desulfovibrio sp. 3_1_syn3]
          Length = 537

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 90/167 (53%), Gaps = 7/167 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQINDNFGHPVGDK-V 154
           +R   LS +D L+G  N   F + L     +  L+++  D+D FK  ND +GH  GD  +
Sbjct: 358 DRFRNLSLVDGLTGAGNRRHFDACLARSDRDRPLALLMLDVDMFKLYNDAYGHLAGDSAL 417

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSG 213
           IA     L  + G+     R GGEEF A   G S  EA  +   LRK I+N +I + SS 
Sbjct: 418 IAVARTMLEELRGSVDQAFRYGGEEFCALLPGVSAAEALAVGERLRKRIQNLRIPHQSSS 477

Query: 214 PSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCF 258
            + H+T+S G+A R    P+S   +   AD+ALY AK SGRN+ VCF
Sbjct: 478 VAPHLTVSIGVALREAGSPMSNQELTEYADKALYRAKTSGRNQ-VCF 523


>gi|192360502|ref|YP_001982276.1| abfX GGDEF domain-containing protein [Cellvibrio japonicus Ueda107]
 gi|190686667|gb|ACE84345.1| abfX GGDEF domain protein [Cellvibrio japonicus Ueda107]
          Length = 297

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 93/171 (54%), Gaps = 10/171 (5%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFG 147
           + Y    +LS +D L+ + N +A   +L         Y + LS++  D+D+FK+IND FG
Sbjct: 125 LHYQGALRLSMLDPLTRIGNRTAMDIALNRELQIAERYRQDLSLLLIDVDHFKRINDQFG 184

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+V+  ++  +           R GGEEF      ++ + A I+A  +R+ + ++Q
Sbjct: 185 HTRGDQVLKEVTGIIQQSSRGSDLTFRYGGEEFVVILGKTNTRGAHIIAERIRERVASTQ 244

Query: 208 INISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +   +G S   T+S GIA   R  K+ +  +  RAD+ALY AK+ GRNRV+
Sbjct: 245 LE-HNGHSFQSTVSIGIASHLRDKKDSVQDLFERADKALYCAKRDGRNRVI 294


>gi|218440033|ref|YP_002378362.1| diguanylate cyclase [Cyanothece sp. PCC 7424]
 gi|218172761|gb|ACK71494.1| diguanylate cyclase [Cyanothece sp. PCC 7424]
          Length = 389

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 84/167 (50%), Gaps = 9/167 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y  +  L+  D L+G LN  A        I+      ++ +++  DID FK INDN+GH 
Sbjct: 215 YQDLQTLATCDFLTGTLNRRAMQIEINKEIAYCNRTQKRFAVILMDIDRFKLINDNYGHD 274

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+   +  +         +GR GGEEF   +  ++ ++A  LA  LR  IEN ++ 
Sbjct: 275 SGDLVLKHFTMTIKNNIRQEDSLGRWGGEEFLVLSKVNTIEDACTLAERLRNGIENEKV- 333

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
           I +   I  TIS G+A    H      ++  AD ALY AK SGRNRV
Sbjct: 334 IINHTIIEYTISLGVAVYAIHGTTQEQLVKSADTALYQAKNSGRNRV 380


>gi|218887438|ref|YP_002436759.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758392|gb|ACL09291.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 1000

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/158 (36%), Positives = 82/158 (51%), Gaps = 9/158 (5%)

Query: 107 DCLSGLLNHSAFI----SSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N   F       +G    Y   L+++  D+D FK++ND FGH  GD V+    
Sbjct: 818 DPLTGIRNRRQFFVDAEREMGRAVRYGRPLAVLMLDLDRFKRVNDRFGHHAGDAVLMGCV 877

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
                       +GRLGGEEFAA  L +   +A   A  LR+ +E   +   SG  +  T
Sbjct: 878 QACQQALRETDILGRLGGEEFAAVLLETDLDDALAAAERLRRAVEEMDVPF-SGQRLRCT 936

Query: 220 ISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
           +S G+A R   +  +  I+ RAD ALY AK++GRNRV+
Sbjct: 937 VSIGLALRGPGDGALDDILRRADSALYAAKEAGRNRVM 974


>gi|194292710|ref|YP_002008617.1| diguanylate cyclase, ggdef domain [Cupriavidus taiwanensis LMG
           19424]
 gi|193226614|emb|CAQ72565.1| putative diguanylate cyclase, GGDEF domain [Cupriavidus taiwanensis
           LMG 19424]
          Length = 415

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 101/201 (50%), Gaps = 20/201 (9%)

Query: 70  SLVIISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121
           S  +++  I+ LLG    +++  E  +++N     +RID L+GLLN  A        ++ 
Sbjct: 195 SAWVLAPLIATLLGLFGFTVMAMEQIVAHNESG--ARIDALTGLLNRGALEMSALSLVAR 252

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                + LS +  DIDYFKQ+ND  GH  GD V+  ++  L          GR GGEEF 
Sbjct: 253 WQRDGQPLSCLVIDIDYFKQVNDTCGHHAGDAVLREVAQALDNSRRASDVAGRYGGEEFC 312

Query: 182 AAALGSSEQEAAILAND-LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR- 239
                + EQ+A+ LAN  LRK+     I++  G   H ++S G+A+          ++R 
Sbjct: 313 VLCPATDEQQASALANRVLRKV---HAIDLPGGRG-HASVSIGVAQLRGGPGSREALWRT 368

Query: 240 ----ADQALYVAKKSGRNRVV 256
               AD+ALY AK  GR+R V
Sbjct: 369 LFADADRALYHAKAHGRDRYV 389


>gi|76818246|ref|YP_336235.1| GGDEF domain-containing protein [Burkholderia pseudomallei 1710b]
 gi|76582719|gb|ABA52193.1| GGDEF domain protein [Burkholderia pseudomallei 1710b]
          Length = 528

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 104/207 (50%), Gaps = 19/207 (9%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYN---RISQLSRIDCLSGLLNHSAFIS 120
           I  + L ++++   I+++ G  +  + +EL    +   R+ +L+R D L+GL N  AF  
Sbjct: 320 IRAQRLGVLMLVFGIAIVGG--TALLARELRWRRHAEMRLQRLARTDALTGLGNRRAFDE 377

Query: 121 SLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFV 172
           +L S           LS++F DID FK  ND++GH  GD V+  +   L V V      V
Sbjct: 378 NLRSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAGDDVLREVGGCLAVNVRRAADDV 437

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER----C 228
            R GGEEF      +  + AA +A  +R+ + +  I     P   +T+S G+        
Sbjct: 438 ARYGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEHVRSPYARVTVSIGLVTSHEHIA 497

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRV 255
           H +  +T++  AD ALY AK +GRNRV
Sbjct: 498 HSD--ATLVKMADAALYQAKSTGRNRV 522


>gi|254456807|ref|ZP_05070235.1| signal transduction response regulator-chey like receiver and ggdef
           domain [Campylobacterales bacterium GD 1]
 gi|207085599|gb|EDZ62883.1| signal transduction response regulator-chey like receiver and ggdef
           domain [Campylobacterales bacterium GD 1]
          Length = 640

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 85/168 (50%), Gaps = 13/168 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           +  +L  +YNR+     ID L         I+S  S N+   I+FFDID+FK +ND +GH
Sbjct: 482 VRDQLTKAYNRVYFEKTIDSL---------IASNTSQNKNTGIIFFDIDHFKNVNDTYGH 532

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+  + D +     +   + R GGEEF      +S  E    A  LRK IE  + 
Sbjct: 533 KAGDDVLRIIVDLVKKNIRSNDKLIRWGGEEFLILLPANSIDEVYKEAEHLRKTIEKHEF 592

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +I      H+T S G++       I   + +AD+ LY AKK+GRNRVV
Sbjct: 593 DIVK----HLTCSFGLSLHEATADIHESVKKADEKLYEAKKNGRNRVV 636


>gi|269125579|ref|YP_003298949.1| diguanylate cyclase [Thermomonospora curvata DSM 43183]
 gi|268310537|gb|ACY96911.1| diguanylate cyclase [Thermomonospora curvata DSM 43183]
          Length = 437

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 9/175 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           +L +  + + ++   +R D  +GLLN +A+    G+        NE L+++  DID+FK+
Sbjct: 240 VLLQRSLMHQQLQAAARTDAKTGLLNAAAWQREAGTELARAERTNEPLALLLIDIDHFKR 299

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH VGD+V+A ++  L         VGR GGEEF     G+   EA  +A  LR 
Sbjct: 300 VNDTHGHLVGDQVLAGVATTLCGQLRDYDVVGRFGGEEFVVLLPGADIVEACRVAERLRS 359

Query: 202 IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +    +    G ++ +TIS G++  R H   +  ++  AD ALY AK+SGR+RV
Sbjct: 360 RVRRLTVPAEEG-TVGVTISVGVSLLRTHGHDLIELLAAADLALYRAKQSGRDRV 413


>gi|237508061|ref|ZP_04520776.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346]
 gi|235000266|gb|EEP49690.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346]
          Length = 487

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 14/169 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +L+R D L+GL N  AF  +L S           LS++F DID FK  ND++GH  G
Sbjct: 315 RLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAG 374

Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D V+  +   L V V      V R GGEEF      +  + AA +A  +R+ + +  I  
Sbjct: 375 DDVLREVGGCLAVNVRRAADDVARYGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEH 434

Query: 211 SSGPSIHITISAGIAER----CHKEPISTIIYRADQALYVAKKSGRNRV 255
              P   +T+S G+        H +  +T++  AD ALY AK +GRNRV
Sbjct: 435 VRSPYARVTVSIGLVTSHEHIAHSD--ATLVKMADAALYQAKSTGRNRV 481


>gi|126176093|ref|YP_001052242.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           baltica OS155]
 gi|125999298|gb|ABN63373.1| diguanylate cyclase [Shewanella baltica OS155]
          Length = 628

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 11/183 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL     ++++ S ID L+G+ N SAF   L             ++++  DID FK I
Sbjct: 441 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLIAESRISRRQETPIALLMLDIDRFKLI 500

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD+ +  ++  L      P   V R GGEEFA     ++E  A  +A  +R 
Sbjct: 501 NDRFGHLAGDEALRTIAQTLQQHLKRPTDLVSRYGGEEFAIILPNTAEDGALQVAETIRD 560

Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +       G +I +TIS G++     + +  + ++ +AD+ALY AK  GRN+V  FS
Sbjct: 561 AVASLHFEW-EGVAIPLTISIGVSADIVTNDQHSTKLLEQADKALYQAKNGGRNQVSLFS 619

Query: 260 DIE 262
            ++
Sbjct: 620 SVQ 622


>gi|220918717|ref|YP_002494021.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956571|gb|ACL66955.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 322

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 95/186 (51%), Gaps = 17/186 (9%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           ++  +L  +  R+ + +  D L+GL N  AF   L         Y++ +S++  D+D+FK
Sbjct: 126 TLQDQLRETQRRLREQTLTDDLTGLKNRRAFDERLQEEFRRAHRYSDPVSLIMIDLDHFK 185

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GHP GD V+   S+QL      P    R GGEEFA     +    A  +A  + 
Sbjct: 186 LVNDRYGHPFGDLVLRGASEQLRASTRDPDICARYGGEEFAVILPKTHLSGALAVAERIW 245

Query: 201 KIIENSQINI---SSGP--SIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGR 252
           K +      +   S+GP  SI +T S GIA    K+   P + + Y AD+ALY AKK+GR
Sbjct: 246 KELSARSYPVPAGSTGPETSIQVTASMGIAFYPSKDIGSPEALVRY-ADEALYQAKKAGR 304

Query: 253 NRVVCF 258
           N  +C 
Sbjct: 305 N-TICL 309


>gi|53722992|ref|YP_111977.1| two component system fusin protein [Burkholderia pseudomallei
           K96243]
 gi|217422130|ref|ZP_03453633.1| diguanylate cyclase [Burkholderia pseudomallei 576]
 gi|254263987|ref|ZP_04954852.1| diguanylate cyclase [Burkholderia pseudomallei 1710a]
 gi|52213406|emb|CAH39449.1| putative two component system fusin protein [Burkholderia
           pseudomallei K96243]
 gi|217394361|gb|EEC34380.1| diguanylate cyclase [Burkholderia pseudomallei 576]
 gi|254214989|gb|EET04374.1| diguanylate cyclase [Burkholderia pseudomallei 1710a]
          Length = 507

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 14/169 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +L+R D L+GL N  AF  +L S           LS++F DID FK  ND++GH  G
Sbjct: 335 RLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAG 394

Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D V+  +   L V V      V R GGEEF      +  + AA +A  +R+ + +  I  
Sbjct: 395 DDVLREVGGCLAVNVRRAADDVARYGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEH 454

Query: 211 SSGPSIHITISAGIAER----CHKEPISTIIYRADQALYVAKKSGRNRV 255
              P   +T+S G+        H +  +T++  AD ALY AK +GRNRV
Sbjct: 455 VRSPYARVTVSIGLVTSHEHIAHSD--ATLVKMADAALYQAKSTGRNRV 501


>gi|53716837|ref|YP_104938.1| GGDEF domain-containing protein [Burkholderia mallei ATCC 23344]
 gi|121597687|ref|YP_990855.1| diguanylate cyclase [Burkholderia mallei SAVP1]
 gi|124381348|ref|YP_001025336.1| diguanylate cyclase [Burkholderia mallei NCTC 10229]
 gi|126447734|ref|YP_001077321.1| diguanylate cyclase [Burkholderia mallei NCTC 10247]
 gi|238562704|ref|ZP_00440005.2| diguanylate cyclase [Burkholderia mallei GB8 horse 4]
 gi|254175962|ref|ZP_04882620.1| diguanylate cyclase [Burkholderia mallei ATCC 10399]
 gi|254202856|ref|ZP_04909218.1| diguanylate cyclase [Burkholderia mallei FMH]
 gi|254208195|ref|ZP_04914544.1| diguanylate cyclase [Burkholderia mallei JHU]
 gi|254359492|ref|ZP_04975764.1| diguanylate cyclase [Burkholderia mallei 2002721280]
 gi|52422807|gb|AAU46377.1| GGDEF domain protein [Burkholderia mallei ATCC 23344]
 gi|121225485|gb|ABM49016.1| diguanylate cyclase [Burkholderia mallei SAVP1]
 gi|126240588|gb|ABO03700.1| diguanylate cyclase [Burkholderia mallei NCTC 10247]
 gi|147745901|gb|EDK52979.1| diguanylate cyclase [Burkholderia mallei FMH]
 gi|147750882|gb|EDK57950.1| diguanylate cyclase [Burkholderia mallei JHU]
 gi|148028679|gb|EDK86639.1| diguanylate cyclase [Burkholderia mallei 2002721280]
 gi|160697004|gb|EDP86974.1| diguanylate cyclase [Burkholderia mallei ATCC 10399]
 gi|238522109|gb|EEP85555.1| diguanylate cyclase [Burkholderia mallei GB8 horse 4]
 gi|261826268|gb|ABM98990.2| diguanylate cyclase [Burkholderia mallei NCTC 10229]
          Length = 487

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 14/169 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +L+R D L+GL N  AF  +L S           LS++F DID FK  ND++GH  G
Sbjct: 315 RLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAG 374

Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D V+  +   L V V      V R GGEEF      +  + AA +A  +R+ + +  I  
Sbjct: 375 DDVLREVGGCLAVNVRRAADDVARYGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEH 434

Query: 211 SSGPSIHITISAGIAER----CHKEPISTIIYRADQALYVAKKSGRNRV 255
              P   +T+S G+        H +  +T++  AD ALY AK +GRNRV
Sbjct: 435 VRSPYARVTVSIGLVTSHEHIAHSD--ATLVKMADAALYQAKSTGRNRV 481


>gi|330830578|ref|YP_004393530.1| GGDEF domain-containing protein [Aeromonas veronii B565]
 gi|328805714|gb|AEB50913.1| GGDEF domain protein [Aeromonas veronii B565]
          Length = 310

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 4/160 (2%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +S+LS  D L+ L N       L +     E LS+V  DID+FKQ+ND +GHP GD  + 
Sbjct: 148 VSRLSCTDPLTELTNRRGAQQQLQALWLQGEPLSVVLGDIDHFKQVNDRYGHPAGDAALC 207

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++  +         + R GGEEF     G   ++    A  LR+ +  +++    G  +
Sbjct: 208 AVAHAMASQLLPGESLARWGGEEFLLILPGCDIEQETRRAEQLRQHVSTTRLPW-QGKQL 266

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +TIS G A    +E I  ++  AD+ALY AK  GRNRVV
Sbjct: 267 SLTISLGCASMKGQESIDYLLMMADRALYQAKDQGRNRVV 306


>gi|182420372|ref|ZP_02951594.1| response regulatory protein [Clostridium butyricum 5521]
 gi|237667618|ref|ZP_04527602.1| response regulatory protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182375738|gb|EDT73336.1| response regulatory protein [Clostridium butyricum 5521]
 gi|237655966|gb|EEP53522.1| response regulatory protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 694

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 90/168 (53%), Gaps = 10/168 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS--YNE------KLSIVFFDIDYFKQINDNFGH 148
           +N +   +  D L+   N +  +S LG   Y+E       L I   D+D FK INDN+GH
Sbjct: 526 FNEVKHFAEYDVLTECFNRNKILS-LGKKIYDESKESGYDLCIAMVDVDNFKSINDNYGH 584

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD ++  ++  +    G   ++GR GGEEF       + ++A+ +  +LRK IE S+ 
Sbjct: 585 GAGDHILKSVARIMKKNIGDNDYIGRYGGEEFIIIFNKKNIEQASDICENLRKRIEKSKY 644

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           NI    SI+ T+S GI E          I  AD++LYVAKK+G+N++V
Sbjct: 645 NIGD-RSINATVSIGIFEIHDNISFLDGIKYADESLYVAKKTGKNKIV 691


>gi|307822135|ref|ZP_07652367.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
 gi|307736701|gb|EFO07546.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
          Length = 394

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 13/174 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+G LN  +        + +       L+I+  D+D+FK IND +GHPVGD
Sbjct: 220 LQKLALSDALTGALNRRSLEQEAARLSARCTRTGDALAIMMIDVDHFKSINDRYGHPVGD 279

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  L+        +  +  R GGEEF      + E++A  LA+ LR+    + I    
Sbjct: 280 EVLRRLAAVAQKTIRSDDYFARYGGEEFCILLPSTIEKDAWTLADRLRQNYA-ALIMEFG 338

Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV----CFSDI 261
           G  +  TIS G+++  H     S+++  ADQA+Y AK+ GRNRVV    C S +
Sbjct: 339 GDVLRSTISIGVSDSIHAGLEFSSLVAAADQAMYRAKQEGRNRVVMHSFCLSQV 392


>gi|332702057|ref|ZP_08422145.1| diguanylate cyclase [Desulfovibrio africanus str. Walvis Bay]
 gi|332552206|gb|EGJ49250.1| diguanylate cyclase [Desulfovibrio africanus str. Walvis Bay]
          Length = 439

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 14/177 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           + +++  + +R   L+  D L+G+ N    ++ L           + L+    D+D+FK+
Sbjct: 263 LRRQIAQAQDRCELLANTDVLTGVPNRRQLMARLEEELARAMRTGQPLACALMDVDHFKR 322

Query: 142 INDNFGHPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           +ND  GH  GD   KV+A ++ + V  +     VGR GGEEF     G+  + A  LA  
Sbjct: 323 VNDTHGHQKGDTVLKVLARIARETVRGYDV---VGRFGGEEFLLVLPGTDSEHAMELAER 379

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +R  + +     +S P++ +TIS G+A     + + +++ RAD ALY AK+ GRNRV
Sbjct: 380 VRLAVHDRLATETSLPNV-VTISLGVATLRPGDNVESLVKRADDALYRAKEKGRNRV 435


>gi|302878235|ref|YP_003846799.1| response regulator receiver modulated diguanylate cyclase
           [Gallionella capsiferriformans ES-2]
 gi|302581024|gb|ADL55035.1| response regulator receiver modulated diguanylate cyclase
           [Gallionella capsiferriformans ES-2]
          Length = 636

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 86/176 (48%), Gaps = 9/176 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  + +R+ QL+  D L+GL N  A +       SS+       + +  D+D+FK IND
Sbjct: 462 ELTAANHRLQQLALTDVLTGLPNRRAAMDRLEQEWSSMRRSQRSFACMVLDVDHFKAIND 521

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GHP GD  ++ ++  L        FV R GGEEF      +    A   A  LR  + 
Sbjct: 522 KYGHPAGDAALSGIAQALRAAARAQDFVCRFGGEEFLVICPDTDVDAAFQCAERLRLQVA 581

Query: 205 NSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++       + +TIS GIA  +   + +  ++  AD+ LY AK++GRNR VC  
Sbjct: 582 TMKV-AGVAAELRLTISIGIAVSKPEMDKVEALLVGADKCLYAAKQAGRNRTVCLK 636


>gi|225849586|ref|YP_002729820.1| diguanylate cyclase [Persephonella marina EX-H1]
 gi|225645477|gb|ACO03663.1| diguanylate cyclase [Persephonella marina EX-H1]
          Length = 338

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 87/154 (56%), Gaps = 9/154 (5%)

Query: 107 DCLSGLLNHSAFIS---SLGSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ +LN  +FI+   S+ + N+    S++  DID FK+IND +GH VGDKV+  + D 
Sbjct: 184 DPLTKVLNRRSFIAIYNSIINRNDIFPASLMIMDIDDFKKINDTYGHNVGDKVLKKIVDV 243

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +           R GGEEF      +   +A ++A  +R++IEN    I    + ++T+S
Sbjct: 244 IKSNIRKKDLFVRWGGEEFIIFFPETDIDQARVVAEKIRRLIEN----IKFEENFNVTVS 299

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            GI E    E +  +I RAD+ALY AKK+ +NRV
Sbjct: 300 IGITELKKGEFLVEVIKRADRALYRAKKNNKNRV 333


>gi|160897442|ref|YP_001563024.1| diguanylate cyclase [Delftia acidovorans SPH-1]
 gi|160363026|gb|ABX34639.1| diguanylate cyclase [Delftia acidovorans SPH-1]
          Length = 612

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 10/158 (6%)

Query: 107 DCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N  A  + L       S   +L++ F D+D FKQ+ND  GH  GD+V+  ++ 
Sbjct: 453 DVLTGLANRRALQARLQRALAQASGPGQLAVCFMDLDGFKQVNDTEGHDAGDEVLRIIAR 512

Query: 161 QLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +L         V RLGG+EF      L S++    I+   L  I     I + SG ++ +
Sbjct: 513 RLTTQARETDCVARLGGDEFVLLLDELASADDALQIMQRCLASI--RQPIRLHSGATVQV 570

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             S GIA    +E  + ++ RAD+A+Y AK++G+ R+V
Sbjct: 571 GASMGIALNASREDATQLLQRADEAMYAAKRAGKGRIV 608


>gi|53805012|ref|YP_113338.1| GGDEF domain-containing protein [Methylococcus capsulatus str.
           Bath]
 gi|53758773|gb|AAU93064.1| GGDEF domain protein [Methylococcus capsulatus str. Bath]
          Length = 391

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 10/169 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y+R+  L+ +D L+G  N    ++ L          N  L I+ FDIDYFK+IND +GH 
Sbjct: 222 YDRLQTLAALDPLTGAYNRRFGMARLREEFRRAVRLNLPLGILMFDIDYFKRINDTYGHL 281

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V++ ++     V      + R GGEEF A    +S  +   +   LR  +++  + 
Sbjct: 282 AGDRVLSRVAKTARSVLREGDVLIRYGGEEFIAVLPAASLHDLEYVGERLRHQVDDLML- 340

Query: 210 ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +    S+H+T+S G A       E  + ++ RAD+ALY AK  GRNR+V
Sbjct: 341 MDGDQSMHVTVSIGAAAYPDTDVEDETALVDRADKALYAAKSDGRNRLV 389


>gi|170756330|ref|YP_001779985.1| GGDEF/HD domain-containing protein [Clostridium botulinum B1 str.
           Okra]
 gi|169121542|gb|ACA45378.1| GGDEF/HD domain protein [Clostridium botulinum B1 str. Okra]
          Length = 567

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 9/172 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  L   D L+ + NH  F  +L          NE LS++F DIDYFK  ND +GH  G
Sbjct: 189 KLESLVNKDGLTDVYNHRFFHDALSKEVIECEEKNEALSMIFIDIDYFKHYNDLYGHQKG 248

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-I 210
           D+V+  + + L         V R GGEEFA     +SEQ+A  +A  +RK IE +     
Sbjct: 249 DQVLKTIGEILKNNTRKEDIVARYGGEEFAVLLPNTSEQDAINIAEKIRKKIECTYFEGE 308

Query: 211 SSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261
            + P+ ++T+S GI+   +K      +I  AD ALY AK   +NRV  ++ I
Sbjct: 309 ENQPNGNLTVSMGISVYPYKAKSDMELIKSADDALYRAKFFNKNRVEAYTSI 360


>gi|167724922|ref|ZP_02408158.1| two component system fusin protein [Burkholderia pseudomallei DM98]
          Length = 487

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 14/169 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +L+R D L+GL N  AF  +L S           LS++F DID FK  ND++GH  G
Sbjct: 315 RLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAG 374

Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D V+  +   L V V      V R GGEEF      +  + AA +A  +R+ + +  I  
Sbjct: 375 DDVLREVGGCLAVNVRRAADDVARYGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEH 434

Query: 211 SSGPSIHITISAGIAER----CHKEPISTIIYRADQALYVAKKSGRNRV 255
              P   +T+S G+        H +  +T++  AD ALY AK +GRNRV
Sbjct: 435 VRSPYARVTVSIGLVTSHEHIAHSD--ATLVKMADAALYQAKSTGRNRV 481


>gi|126733986|ref|ZP_01749733.1| hypothetical protein RCCS2_07504 [Roseobacter sp. CCS2]
 gi|126716852|gb|EBA13716.1| hypothetical protein RCCS2_07504 [Roseobacter sp. CCS2]
          Length = 252

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 96/208 (46%), Gaps = 17/208 (8%)

Query: 56  TPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH 115
           +P Y + +  V    L+   +T+SL    +             R+ QLSR D L+GL N 
Sbjct: 48  SPLYHIGHATVVGGPLIAFFLTVSLFQIRLQ-----------RRLWQLSRKDALTGLNNR 96

Query: 116 SAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             F   +S   + N +  +V  D D FK IND  GH  GD+ +  +S  L         +
Sbjct: 97  RTFFELVSKARAINHRGVLVMMDADRFKAINDTHGHLAGDRCLKSISYTLQRNVRRDDVL 156

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232
            R+GGEEFA    G++ Q A ++   + K I     +  +   + +T+S G A+      
Sbjct: 157 ARIGGEEFALYLTGATPQTARVIGERITKPIT---FDTDTVKGLSVTLSLGAAQALPDLS 213

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSD 260
           I  +  RAD ALY AK+ GR R + + D
Sbjct: 214 IDAVFARADAALYQAKQDGRARYLQWED 241


>gi|126457290|ref|YP_001076708.1| diguanylate cyclase [Burkholderia pseudomallei 1106a]
 gi|167850887|ref|ZP_02476395.1| two component system fusin protein [Burkholderia pseudomallei
           B7210]
 gi|242313189|ref|ZP_04812206.1| diguanylate cyclase [Burkholderia pseudomallei 1106b]
 gi|126231058|gb|ABN94471.1| diguanylate cyclase [Burkholderia pseudomallei 1106a]
 gi|242136428|gb|EES22831.1| diguanylate cyclase [Burkholderia pseudomallei 1106b]
          Length = 487

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 14/169 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +L+R D L+GL N  AF  +L S           LS++F DID FK  ND++GH  G
Sbjct: 315 RLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAG 374

Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D V+  +   L V V      V R GGEEF      +  + AA +A  +R+ + +  I  
Sbjct: 375 DDVLREVGGCLAVNVRRAADDVARYGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEH 434

Query: 211 SSGPSIHITISAGIAER----CHKEPISTIIYRADQALYVAKKSGRNRV 255
              P   +T+S G+        H +  +T++  AD ALY AK +GRNRV
Sbjct: 435 VRSPYARVTVSIGLVTSHEHIAHSD--ATLVKMADAALYQAKSTGRNRV 481


>gi|226942206|ref|YP_002797279.1| hypothetical protein Avin_00370 [Azotobacter vinelandii DJ]
 gi|226717133|gb|ACO76304.1| transmembrane protein with C-terminal GGDEF motif [Azotobacter
           vinelandii DJ]
          Length = 529

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 8/169 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
            R++Q +    L+GL+N      +L  + E+    +++  DID+FKQ+NDN GH VGD+V
Sbjct: 356 GRLNQENITAPLTGLVNRRGQQFALERWQEQQQPFAVIVLDIDHFKQVNDNHGHDVGDQV 415

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +S  +  V  +   V R GGEEF      +  + A  +A  LR +I ++Q    S  
Sbjct: 416 LQHVSHLMDSVSRSSDLVCRSGGEEFVLLLPETGLEAATQVAERLRGLISHTQTPTGS-- 473

Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              +TIS G+A        +  ++  AD+ALY AK++GRNRVV     E
Sbjct: 474 --FVTISTGVAHWPGSASSVPAVLKLADEALYRAKRNGRNRVVVAGQRE 520


>gi|212636619|ref|YP_002313144.1| cyclic nucleotide phosphodiesterase [Shewanella piezotolerans WP3]
 gi|212558103|gb|ACJ30557.1| Cyclic nucleotide phosphodiesterase, putative [Shewanella
           piezotolerans WP3]
          Length = 641

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 12/170 (7%)

Query: 98  NR-ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           NR +S L+  D L+ L N         AF +   ++N +LS++ FD D+FK+IND FGH 
Sbjct: 471 NRMLSILAMTDHLTQLPNRRQIYLKAQAFFNHARNHNSELSVISFDADHFKRINDTFGHE 530

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L+     +   P  VGR GGEEF      ++   A  +A  L   ++++  +
Sbjct: 531 TGDVALQTLAISAQELMRKPQIVGRTGGEEFLILLPDTNLTAAMRIATQLINNVKDA--D 588

Query: 210 ISSGPS-IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             + P+   +TISAG+A  +     ++T+I RAD ALY AK +GRN+ VC
Sbjct: 589 YRALPTGFTLTISAGVATLQASDLQLATLINRADDALYSAKNAGRNQAVC 638


>gi|206562608|ref|YP_002233371.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
 gi|198038648|emb|CAR54608.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
          Length = 510

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 87/176 (49%), Gaps = 9/176 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           LK    + +++ +L+  D L+GL N   F + L    ++       LS++F D+D+FK  
Sbjct: 326 LKRRQDAESKLYRLAHTDSLTGLDNRGTFDAVLAKEAQRASRSGRPLSVLFVDVDHFKAF 385

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GHP GD V+  ++  L          V R GGEEF      +    AA +A  +R+
Sbjct: 386 NDYYGHPAGDDVLRQVAQSLSRCLRRDSDHVARYGGEEFVVTLPDTDAPGAATVAEGIRR 445

Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
            I    I     P   +T S G A     +   +T++ RAD+ALY AK  GRNRV+
Sbjct: 446 AIAGLGIEHVKSPYGRVTASIGTATAADGRMNAATLLRRADEALYRAKSGGRNRVL 501


>gi|163800944|ref|ZP_02194844.1| hypothetical protein 1103602000593_AND4_01738 [Vibrio sp. AND4]
 gi|159175293|gb|EDP60090.1| hypothetical protein AND4_01738 [Vibrio sp. AND4]
          Length = 320

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 9/164 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGD 152
           +S++SR D L+GL N + +  SL     +L       S+V FDID+FK++ND +GH  GD
Sbjct: 152 LSEISRKDGLTGLFNRAYWEQSLKEEFAELKVTEGASSLVIFDIDHFKKVNDTYGHHSGD 211

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +VI   S  L     +    GR GGEEF      +++++A   A  LRK IE   + +  
Sbjct: 212 EVIRRTSSILSKTARSNDVCGRFGGEEFTVLLPDTNQEQAIYFAERLRKRIEQEIVKVEE 271

Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              I+ TIS G+   + + E  +  +  AD ALY AK++GRN+ 
Sbjct: 272 FL-INYTISVGVCVYKSYFESHTQWLKNADLALYRAKENGRNQT 314


>gi|126443111|ref|YP_001063817.1| GGDEF domain-containing protein [Burkholderia pseudomallei 668]
 gi|126222602|gb|ABN86107.1| diguanylate cyclase (GGDEF) domain protein [Burkholderia
           pseudomallei 668]
          Length = 487

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 14/169 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +L+R D L+GL N  AF  +L S           LS++F DID FK  ND++GH  G
Sbjct: 315 RLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAG 374

Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D V+  +   L V V      V R GGEEF      +  + AA +A  +R+ + +  I  
Sbjct: 375 DDVLREVGGCLAVNVRRAADDVARYGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEH 434

Query: 211 SSGPSIHITISAGIAER----CHKEPISTIIYRADQALYVAKKSGRNRV 255
              P   +T+S G+        H +  +T++  AD ALY AK +GRNRV
Sbjct: 435 VRSPYARVTVSIGLVTSHEHIAHSD--ATLVKMADAALYQAKSTGRNRV 481


>gi|322509775|gb|ADX05229.1| Putative membrane protein with GGDEF domain [Acinetobacter
           baumannii 1656-2]
          Length = 255

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 3/165 (1%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           I +LS+ID L+ +LN  +  + L + +E+    +++  DID+FK+IND +GH  GD+V+ 
Sbjct: 85  IQRLSQIDPLTNVLNRRSLNTHLEALHEQQFDYAVILLDIDHFKKINDIYGHHQGDQVLI 144

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++  L         +GR GGEEF      +   +A  +A   R+ ++   I  +    I
Sbjct: 145 EIAQCLSENLRNEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRQALQELTIFNNQNIQI 204

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           H++ S GI+          +I +ADQALY  K SGRN+V  F  +
Sbjct: 205 HVSASFGISSSAFANDPYLVIRQADQALYAVKASGRNQVRTFHQL 249


>gi|167907804|ref|ZP_02495009.1| two component system fusin protein [Burkholderia pseudomallei NCTC
           13177]
          Length = 487

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 14/169 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +L+R D L+GL N  AF  +L S           LS++F DID FK  ND++GH  G
Sbjct: 315 RLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAG 374

Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D V+  +   L V V      V R GGEEF      +  + AA +A  +R+ + +  I  
Sbjct: 375 DDVLREVGGCLAVNVRRAADDVARYGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEH 434

Query: 211 SSGPSIHITISAGIAER----CHKEPISTIIYRADQALYVAKKSGRNRV 255
              P   +T+S G+        H +  +T++  AD ALY AK +GRNRV
Sbjct: 435 VRSPYARVTVSIGLVTSHEHIAHSD--ATLVKMADAALYQAKSTGRNRV 481


>gi|55981610|ref|YP_144907.1| GGDEF domain-containing protein [Thermus thermophilus HB8]
 gi|55773023|dbj|BAD71464.1| GGDEF domain protein [Thermus thermophilus HB8]
          Length = 360

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 80/156 (51%), Gaps = 11/156 (7%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N           +  L  Y   LS+V  D+D FK +ND  GH VGD+V+  L+
Sbjct: 204 DFLTGLRNRRYLELILERELFRLQRYGRPLSLVLLDLDGFKAVNDLHGHEVGDRVLQALA 263

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            ++           RLGGEEFA     +   +A  LA  LR+ +E     ++  P   IT
Sbjct: 264 QRIEAHLRRSDRAVRLGGEEFALLLPETPLPQALRLAERLRRAVE----AMAVPPVARIT 319

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+AE    +   T++ RAD+A+Y AK+ G+NRV
Sbjct: 320 ASFGVAEARPTDTPLTLLRRADEAMYRAKRKGKNRV 355


>gi|205372227|ref|ZP_03225042.1| YhcK [Bacillus coahuilensis m4-4]
          Length = 212

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 106/193 (54%), Gaps = 14/193 (7%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSY 125
           +I +TI  +L ++S + +K L +   R    S  D L+GL N  +        I+ + + 
Sbjct: 9   MIFLTIGYILFFVSETHIKTL-VDLERKEAESVTDHLTGLQNRRSLDRMIYQIIADIQNG 67

Query: 126 NEKL-SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV---VVFGTPMFVGRLGGEEFA 181
           +E + S++ FD+DYFKQ ND +GH  GD+++  +S +LV   +     + + R GGEEF 
Sbjct: 68  DETMYSVILFDVDYFKQFNDTYGHISGDEILWQMS-RLVENHLEDQEHITLYRYGGEEFC 126

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRA 240
                   +EA  +A  +R+++E +   I +   IH+TIS G+A      + +S ++  A
Sbjct: 127 IVMKSVPHKEAKRVAEKIRELVETANFYIPAKKEIHLTISLGVASYPETTDELSDVLSCA 186

Query: 241 DQALYVAKKSGRN 253
           D+ LY AK++GRN
Sbjct: 187 DKFLYRAKRNGRN 199


>gi|169794339|ref|YP_001712132.1| GGDEF domain-containing protein [Acinetobacter baumannii AYE]
 gi|213159087|ref|YP_002321084.1| GGDEF family protein [Acinetobacter baumannii AB0057]
 gi|332850144|ref|ZP_08432531.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332868980|ref|ZP_08438539.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
 gi|169147266|emb|CAM85125.1| putative membrane protein with GGDEF domain [Acinetobacter
           baumannii AYE]
 gi|213058247|gb|ACJ43149.1| GGDEF family protein [Acinetobacter baumannii AB0057]
 gi|332730993|gb|EGJ62299.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332733023|gb|EGJ64225.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
          Length = 397

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 131/277 (47%), Gaps = 26/277 (9%)

Query: 13  LCHEKNL-ESFSPHTFMIYF------------SIFFSIFI-ATVIFIANIFLFYIGL--- 55
           LCH+  L  S SP T + Y              I +S FI AT+I     +L   G+   
Sbjct: 117 LCHDGYLIGSISPATMVGYVGTIGVGLVLFERKIVYSAFIPATIILAVCTYLSMTGVISY 176

Query: 56  TPFYGLEYIL-VENLSLVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCL 109
            P +  + +   +     + S+   ++   ++  IL E+ ++  R     I +LS+ID L
Sbjct: 177 APLFNFKTMRHAQTNPFWLGSMLFFIMPILVACFILFEILLTQWRQRETYIQRLSQIDPL 236

Query: 110 SGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           + +LN  +  + L + +E+    +++  DID+FK+IND +GH  GD+V+  ++  L    
Sbjct: 237 TNVLNRRSLNTHLEALHEQQFDYAVILLDIDHFKKINDIYGHHQGDQVLIEIARCLSENL 296

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                +GR GGEEF      +   +A  +A   R+ ++   I  +    IH++ S GI+ 
Sbjct: 297 RNEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRQALQELTIFNNQNIQIHVSASFGISS 356

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                    +I +ADQALY  K SGRN+V  F  +  
Sbjct: 357 SAFANDPYLVIRQADQALYAVKASGRNQVRTFHQLPQ 393


>gi|167743862|ref|ZP_02416636.1| two component system fusin protein [Burkholderia pseudomallei 14]
 gi|167821049|ref|ZP_02452729.1| two component system fusin protein [Burkholderia pseudomallei 91]
 gi|167829413|ref|ZP_02460884.1| two component system fusin protein [Burkholderia pseudomallei 9]
 gi|167899491|ref|ZP_02486892.1| two component system fusin protein [Burkholderia pseudomallei 7894]
 gi|167916166|ref|ZP_02503257.1| two component system fusin protein [Burkholderia pseudomallei 112]
 gi|167924002|ref|ZP_02511093.1| two component system fusin protein [Burkholderia pseudomallei
           BCC215]
 gi|226197006|ref|ZP_03792584.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9]
 gi|254184667|ref|ZP_04891256.1| diguanylate cyclase [Burkholderia pseudomallei 1655]
 gi|254185886|ref|ZP_04892404.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237]
 gi|254194156|ref|ZP_04900588.1| diguanylate cyclase [Burkholderia pseudomallei S13]
 gi|254300943|ref|ZP_04968387.1| diguanylate cyclase [Burkholderia pseudomallei 406e]
 gi|157811534|gb|EDO88704.1| diguanylate cyclase [Burkholderia pseudomallei 406e]
 gi|157933572|gb|EDO89242.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237]
 gi|169650907|gb|EDS83600.1| diguanylate cyclase [Burkholderia pseudomallei S13]
 gi|184215259|gb|EDU12240.1| diguanylate cyclase [Burkholderia pseudomallei 1655]
 gi|225930989|gb|EEH26998.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9]
          Length = 487

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 14/169 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +L+R D L+GL N  AF  +L S           LS++F DID FK  ND++GH  G
Sbjct: 315 RLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAG 374

Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D V+  +   L V V      V R GGEEF      +  + AA +A  +R+ + +  I  
Sbjct: 375 DDVLREVGGCLAVNVRRAADDVARYGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEH 434

Query: 211 SSGPSIHITISAGIAER----CHKEPISTIIYRADQALYVAKKSGRNRV 255
              P   +T+S G+        H +  +T++  AD ALY AK +GRNRV
Sbjct: 435 VRSPYARVTVSIGLVTSHEHIAHSD--ATLVKMADAALYQAKSTGRNRV 481


>gi|296285042|ref|ZP_06863040.1| diguanylate cyclase [Citromicrobium bathyomarinum JL354]
          Length = 394

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 90/179 (50%), Gaps = 11/179 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           EL +   +  QL+  D L+GLLN  A   F   LG  + +  ++  DID FK IND  GH
Sbjct: 203 ELLMLERKSQQLALTDPLTGLLNRRALLDFAEGLGEQSGQSRLLLIDIDCFKVINDTHGH 262

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD V+  ++  +    G  +   RLGGEEF  A LG+SE      A  L   I  +++
Sbjct: 263 DVGDTVLQEVARLIQAHAGDGVSAARLGGEEF--ALLGTSEALPPGKAMQLLAEIREAEM 320

Query: 209 NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                     TIS G+AE    +  +   + +RAD+ALY AK  GR+R V   ++E  T
Sbjct: 321 PHGG----QCTISIGVAEGALSDDSTWRELYHRADKALYAAKSQGRDRTVHEHELETLT 375


>gi|326795951|ref|YP_004313771.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326546715|gb|ADZ91935.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 361

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 12/167 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            R  Q +  D L+ + N     + L     N+ + +   D+D+FK++ND FGH +GD+V+
Sbjct: 195 KRSKQEADRDFLTDINNRRGLQNKLRELQPNDDICVFLIDVDHFKRVNDTFGHDIGDRVL 254

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++ +L  V+    F+ R GGEEF    +          ++ ++ I E  Q  +S  P 
Sbjct: 255 IEIASRLRTVYPERHFLTRWGGEEFMITLINPK-------SDRIQTIAERFQTILSHSPY 307

Query: 216 IH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            H   +T+S G++   + +   TI+ +AD A+Y AK +GRN+V  FS
Sbjct: 308 QHVGTVTVSLGVSSLSNHKDFETIVQQADNAMYEAKHNGRNQVALFS 354


>gi|307941681|ref|ZP_07657036.1| ggdef domain-containing protein [Roseibium sp. TrichSKD4]
 gi|307775289|gb|EFO34495.1| ggdef domain-containing protein [Roseibium sp. TrichSKD4]
          Length = 405

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 12/167 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
           +  +L+++D L+ L N  AF++    + ++        S++  D+D+FK++ND  GH +G
Sbjct: 212 KFQELAQVDPLTNLNNRRAFLNEANDWLKRNSRKERDFSVIMLDLDHFKKVNDTHGHAIG 271

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINI 210
           DKV+   +D L         +GRLGGEEFA     +        A  +R K IE    + 
Sbjct: 272 DKVLKISADVLKTELPNDAAIGRLGGEEFAILLKNTPHDRVMYYAERVRCKFIEAVCSDF 331

Query: 211 SSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
           +   ++ +T+SAG      +   P++T +  AD+ALY AK +GRNRV
Sbjct: 332 NG--ALSVTLSAGYHTENTRSNCPLNTAMAFADRALYQAKDAGRNRV 376


>gi|218549953|ref|YP_002383744.1| diguanylate cyclase AdrA [Escherichia fergusonii ATCC 35469]
 gi|218357494|emb|CAQ90133.2| putative diguanylate cyclase [Escherichia fergusonii ATCC 35469]
          Length = 399

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 100/201 (49%), Gaps = 23/201 (11%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------ 122
           LSL +I +   L+  ++S     +L     R+  +S  D ++G+ N   + + L      
Sbjct: 204 LSLPVI-VLYPLIFAWVSYQTATKLAEHKRRLQVMSARDGMTGVYNRRHWETLLCIEFDH 262

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              Y    +++  DID+FK IND +GH VGD+ I  L+ QL +   +   +GR GG+EFA
Sbjct: 263 CRRYQRDATLLIIDIDHFKSINDTWGHDVGDEAILALTRQLQMTLRSSDVIGRFGGDEFA 322

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII--YR 239
               G+  + A    + + + +  S + +S  P + + IS G+A      P++  I  YR
Sbjct: 323 VIMCGTPAENAIAAMSRVHERL--SHLRLSCAPQVILRISVGVA------PLTPQISHYR 374

Query: 240 -----ADQALYVAKKSGRNRV 255
                AD ALY AK +GRNR 
Sbjct: 375 EWLKSADMALYKAKSAGRNRT 395


>gi|78063244|ref|YP_373152.1| diguanylate cyclase [Burkholderia sp. 383]
 gi|77971129|gb|ABB12508.1| diguanylate cyclase [Burkholderia sp. 383]
          Length = 510

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 9/176 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           LK   ++ +++ +L+  D L+G+ N   F + L    ++       LS++F D+D+FK  
Sbjct: 326 LKRRQVAESKLYRLAHTDALTGVDNRGTFDTVLAKEAQRASRSGRPLSVLFVDVDHFKAF 385

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GHP GD V+  ++             V R GGEEF      +  Q A  +A  +R+
Sbjct: 386 NDYYGHPAGDDVLRRVAQTASRCLRRDSDHVARYGGEEFVVTLPDTDAQGALTVAEGIRR 445

Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
            I    I  +  P   +T S G A     +   +T++ RAD+ALY AK  GRNRV+
Sbjct: 446 AIAALGIEHAKSPYGRVTASIGAATSTDGRVNAATLLRRADEALYRAKSGGRNRVL 501


>gi|320158647|ref|YP_004191025.1| GGDEF domain-containing protein [Vibrio vulnificus MO6-24/O]
 gi|319933959|gb|ADV88822.1| GGDEF domain protein [Vibrio vulnificus MO6-24/O]
          Length = 414

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 24/178 (13%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +L+ ID L+ L +  A    +     + SI   D+D+FK+ ND +GH  GD V+  +  +
Sbjct: 236 ELAFIDVLTQLPSRRALEMDVKHLGRRFSIAMIDVDHFKKFNDTYGHDTGDDVLKLVGSR 295

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPS--- 215
           L+++ G    V R GGEEF     G + +E     +D+R+ I N  +   N ++ PS   
Sbjct: 296 LLLIKGGAK-VYRYGGEEFTVVFKGKTSKEVQGYLDDIREDIANYDLVLRNDTTRPSKAS 354

Query: 216 ---------------IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                          +++T+S G+++ R  K+P  TI   AD+ALY AKK+GRN+V+ 
Sbjct: 355 EGKKRRGTQENTMNTVNVTVSIGVSDSRSSKDP-DTIRSLADEALYKAKKAGRNQVMT 411


>gi|283834350|ref|ZP_06354091.1| diguanylate cyclase YddV [Citrobacter youngae ATCC 29220]
 gi|291069884|gb|EFE07993.1| diguanylate cyclase YddV [Citrobacter youngae ATCC 29220]
          Length = 462

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 9/169 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS-------SLGSYNEK-LSIVFFDIDYFKQINDNFGHPVG 151
           + Q +  D L+ LLN   FI        SL  +  K  ++   DIDYFKQIND++GH  G
Sbjct: 295 VKQENGKDSLTQLLNRR-FIPTIMRREISLALHTRKPFTLAMLDIDYFKQINDSYGHNTG 353

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D  +  ++  +     +  +V R GGEEF    + S   +A+I+   LR  I + ++  S
Sbjct: 354 DMTLKNVAAVIYDHIRSSDYVFRYGGEEFMILLVESDRSQASIILETLRMKIADLRMAAS 413

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  +  +T+S GIAE  +      ++ +AD+ALY+AK +GR+RV  F +
Sbjct: 414 ATEAFSVTVSIGIAEYDYHPDYKQLVDKADRALYLAKSNGRDRVEIFQE 462


>gi|229147958|ref|ZP_04276299.1| GGDEF domain protein [Bacillus cereus BDRD-ST24]
 gi|296505836|ref|YP_003667536.1| GGDEF family protein [Bacillus thuringiensis BMB171]
 gi|228635608|gb|EEK92097.1| GGDEF domain protein [Bacillus cereus BDRD-ST24]
 gi|296326888|gb|ADH09816.1| GGDEF family protein [Bacillus thuringiensis BMB171]
          Length = 352

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 100/208 (48%), Gaps = 26/208 (12%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRI----------SQLSRIDCLSGLLN 114
           L++ + +V + +  S++ GYI+       FIS N +           Q + ID L+GL N
Sbjct: 150 LIKEIHIVGLYLISSIITGYIT-------FISANYVLQSNELFQTMKQYATIDALTGLGN 202

Query: 115 HSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
              F       IS+    N+ L ++  DID+FK +ND +GHP GD+V+  +   L  +  
Sbjct: 203 VRQFDLEMNRHISNKHLKNDSLCLLLIDIDHFKHVNDTYGHPAGDEVLKQVGHILREMSA 262

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
            P  V R GGEEFA             +    R  +E     +  G  I IT+S G++E 
Sbjct: 263 FPDLVFRKGGEEFALLIPRKEMAYGIHVGEQTRIAVEKHSFELLDGTKIKITVSVGVSE- 321

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++      I  AD ALY +K++GRN+V
Sbjct: 322 -YEGASEQFIQAADDALYYSKRNGRNKV 348


>gi|227327985|ref|ZP_03832009.1| hypothetical protein PcarcW_11895 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 167

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 84/159 (52%), Gaps = 10/159 (6%)

Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++R D L+G L   AF  +              +S++  DIDYFKQ+ND+FGH VGD  +
Sbjct: 7   IARYDDLTGYLRRDAFFLAANKAFSIANLTKRPVSVILIDIDYFKQVNDSFGHSVGDDAL 66

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
            F++D     F      GR+GG+EFA     +   +A  + +  R+ + N+    ++G  
Sbjct: 67  KFVADTFRKSFRREDIFGRIGGDEFAIVLPNTGLDDAYTIVDKARERVSNTPCETAAG-K 125

Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
           I +T+S G+ E     E +  ++ RAD  LY+AKK+ RN
Sbjct: 126 IRLTVSIGLVEYHITGEDLIEVMKRADDNLYIAKKT-RN 163


>gi|56459965|ref|YP_155246.1| signal protein [Idiomarina loihiensis L2TR]
 gi|56178975|gb|AAV81697.1| Signaling protein with a sensor domain and GGDEF domain [Idiomarina
           loihiensis L2TR]
          Length = 507

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 88/165 (53%), Gaps = 22/165 (13%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N SAF   L        +    LSI   D+D+FK IND+FGH  GDK +  ++
Sbjct: 349 DNLTKLPNRSAFDERLNLEFQRWVNDETPLSIAIIDVDHFKNINDSFGHIAGDKTLQVIA 408

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP----- 214
             L        FV R GGEEF  A +  S+ ++A       + IEN++  +++ P     
Sbjct: 409 GTLSKSLRESAFVCRYGGEEF--AIIFCSDGQSAY------QHIENTREKVANIPFKFKT 460

Query: 215 -SIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVC 257
             I ITISAGIAE  + E     ++ RAD+ALY AK SGRN+V+ 
Sbjct: 461 DDIRITISAGIAEFKYNEDTPLAVFERADKALYEAKNSGRNKVIT 505


>gi|307720225|ref|YP_003891365.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
 gi|306978318|gb|ADN08353.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
          Length = 369

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 126/245 (51%), Gaps = 29/245 (11%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK- 91
           ++FS+    ++F+    L Y  +  +   +++  + + LV+ S  ++L + YI  ++L  
Sbjct: 123 LYFSLLFYAILFV----LSYHYINVWDSGQWLFTDWMRLVLASTVLTLCM-YIYEALLDK 177

Query: 92  -ELFISYNRISQLSRI---------DCLSGLLNHSAF------ISSLGSYNEKLSIVFF- 134
            +  +   R  +L R          D L+GL N   +      +++L    + L I FF 
Sbjct: 178 AQQDLQRARAKELQRTKELHLQSITDQLTGLYNRRYYDNMIVKLAALAK-RQNLCITFFI 236

Query: 135 -DIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            DIDYFK  NDN+GH  GD+ +  ++  L   +     FV RLGGEEFA   L   +Q+A
Sbjct: 237 LDIDYFKLYNDNYGHIQGDEALIEVAQVLKKHIQRGDDFVFRLGGEEFAGIILSKEKQKA 296

Query: 193 AILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKK 249
              A+ L KIIE+ +I + +S  S  +T+S GIA   H +   I  +   AD+ALY AK 
Sbjct: 297 QQWASQLTKIIEDLKIEHRTSKISEFLTVSIGIATLSHPQENNIGLLYKDADKALYTAKY 356

Query: 250 SGRNR 254
           +GRN+
Sbjct: 357 NGRNQ 361


>gi|254458357|ref|ZP_05071782.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207084665|gb|EDZ61952.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 422

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 80/154 (51%), Gaps = 11/154 (7%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N   F       +     YN  LS+   DID FK  ND +GH +GD+V+  LS
Sbjct: 267 DSLTGINNREKFEEVIYYELKQSKRYNRSLSLAILDIDKFKDFNDTYGHLIGDEVLIMLS 326

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           +++           R GGEEF      ++ Q A  LA + R+IIE  + + S+G    +T
Sbjct: 327 EEIQKHTRESDLFARWGGEEFVLLFSNTNLQNAMNLAENFRQIIEKLK-HKSAGS---VT 382

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +S G+ E    + + ++  RAD ALY AK SGRN
Sbjct: 383 VSFGLTEYKKGDTLKSMFKRADDALYEAKNSGRN 416


>gi|157374293|ref|YP_001472893.1| sensory box protein [Shewanella sediminis HAW-EB3]
 gi|157316667|gb|ABV35765.1| sensory box protein [Shewanella sediminis HAW-EB3]
          Length = 340

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 11/172 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           +EL      ++ LS ID L+ + N  +F   L         YN  LS+  FDID FK +N
Sbjct: 170 QELEEKIKEVALLSNIDPLTSIANRRSFEKELQKEVLRSRRYNHPLSLTIFDIDLFKNVN 229

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD ++  L   +        F  R GGEEF       + ++A ++   LR  I
Sbjct: 230 DTYGHKKGDDILQKLCKLVSTNIRELDFFARWGGEEFVLIFPELTLKQALVVTEKLRTTI 289

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              +I     P ++IT S G+ E   ++ I  I  R D +LY AK +GRNR+
Sbjct: 290 SQYEIE----PDLYITCSFGVTECKDEDSIEDIFQRIDNSLYQAKSNGRNRI 337


>gi|24375692|ref|NP_719735.1| GGDEF domain-containing protein [Shewanella oneidensis MR-1]
 gi|24350618|gb|AAN57179.1|AE015852_9 GGDEF domain protein [Shewanella oneidensis MR-1]
          Length = 625

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 98/185 (52%), Gaps = 13/185 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQI 142
           L+EL     ++++ S ID L+G+ N SAF   L + +         ++++  DID FK I
Sbjct: 440 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLLAESRISRRQETPIALLMLDIDRFKSI 499

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD+ +  ++  L      P   V R GGEEFA     ++   A  +A  +R 
Sbjct: 500 NDQFGHLAGDQALKLIAQTLQQHLKRPTDLVSRFGGEEFAIILPNTTADGALQVAESIRD 559

Query: 202 IIENSQINIS-SGPSIHITISAGI-AERCHKEPIST-IIYRADQALYVAKKSGRNRVVCF 258
            +  S I ++  G  I +T+S G+ A+    E  ST ++ +AD+ALY AK SGRN+V  +
Sbjct: 560 TV--SCIGLTWEGKPIPLTVSIGVSADVIMNEQHSTELLEQADKALYQAKNSGRNQVKLY 617

Query: 259 SDIEN 263
           +  + 
Sbjct: 618 APAQT 622


>gi|325498328|gb|EGC96187.1| diguanylate cyclase AdrA [Escherichia fergusonii ECD227]
          Length = 366

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 102/201 (50%), Gaps = 25/201 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------ 122
           LSL +I +   L+  ++S     +L     R+  +S  D ++G+ N   + + L      
Sbjct: 171 LSLPVI-VLYPLIFAWVSYQTATKLAEHKRRLQVMSARDGMTGVYNRRHWETLLCIEFDH 229

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              Y    +++  DID+FK IND +GH VGD+ I  L+ QL +   +   +GR GG+EFA
Sbjct: 230 CRRYQRDATLLIIDIDHFKSINDTWGHDVGDEAILALTRQLQMTLRSSDVIGRFGGDEFA 289

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E AI A  + ++ E  S + +S  P + + IS G+A      P++  I  Y
Sbjct: 290 VIMCGTPA-ENAIAA--MSRVHERLSHLRLSCAPQVILRISVGVA------PLTPQISHY 340

Query: 239 R-----ADQALYVAKKSGRNR 254
           R     AD ALY AK +GRNR
Sbjct: 341 REWLKSADMALYKAKSAGRNR 361


>gi|187920507|ref|YP_001889539.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
 gi|187718945|gb|ACD20168.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
          Length = 381

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 12/169 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFIS--------SLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
            R+ +L+ +D L+G L+  AF++        SL +    +++   DID FK +NDN+GH 
Sbjct: 215 ERLERLANVDDLTGALSRRAFLAIGDALLKASLRT-RSPVALAIIDIDSFKAVNDNYGHA 273

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V++  +  +          GRLGGEEF      ++  EA  L + LR  +  +  +
Sbjct: 274 AGDQVLSHFATFVARNLRVGDVFGRLGGEEFGVLCPATTTAEAVSLLDRLRGRLAGAAAD 333

Query: 210 -ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +  G  +  T S G+ +    E ++ ++ RAD ALY AK SGRNRV+ 
Sbjct: 334 ELPRG--LRYTFSVGVDQLRRDESLAQLMARADGALYAAKASGRNRVMA 380


>gi|163783339|ref|ZP_02178332.1| hypothetical protein HG1285_13857 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881447|gb|EDP74958.1| hypothetical protein HG1285_13857 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 540

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 87/158 (55%), Gaps = 11/158 (6%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+G+ N  AF       I    + ++ +S++  D+D FK++ND+ GH VGD+V+A L
Sbjct: 382 MDSLTGVFNRRAFDEFGRELIERFLTLSKPISVLMIDVDDFKRVNDSHGHQVGDQVLAEL 441

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
              +         V R GGEEF A   G+S + A    + +R+ +E    +   G    I
Sbjct: 442 GRLIRETLRETDIVFRYGGEEFLALLPGTSLEGALRAGDKVRRRVEAH--SFPPGDQ-RI 498

Query: 219 TISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
           T+S G+A+     E    ++ RAD+ALY+AKK+G+NRV
Sbjct: 499 TVSVGVAQGTEGDERAEDVVSRADRALYIAKKTGKNRV 536


>gi|262191053|ref|ZP_06049261.1| amino acid ABC transporter amino acid-binding protein [Vibrio
           cholerae CT 5369-93]
 gi|262033074|gb|EEY51604.1| amino acid ABC transporter amino acid-binding protein [Vibrio
           cholerae CT 5369-93]
          Length = 461

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 94/170 (55%), Gaps = 6/170 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
           ++L  +  ++S L++ D L+ + N  +F   L +   +   L+++ FDID FK IND+FG
Sbjct: 289 QQLEEANQKLSYLAKTDSLTDIANRRSFFEYLEAEQARSGSLTLMVFDIDDFKTINDHFG 348

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD  I F+   +     +  +  R+GGEEFA  A G + +E+  LA  + + +   +
Sbjct: 349 HGAGDNAICFVVGCVRQALESDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 408

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             +++  S+ +TIS G A   H   P S  ++ AD  +Y  K++G+N+VV
Sbjct: 409 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 456


>gi|260462172|ref|ZP_05810416.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075]
 gi|259032032|gb|EEW33299.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075]
          Length = 263

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 79/156 (50%), Gaps = 8/156 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N   F  +L  Y E+       + ++  D+D+FKQ+ND  GH VGD+V+  ++
Sbjct: 107 DSLTGMQNRRYFDDALKEYLEEFRRIEKPVGLMILDLDHFKQVNDTHGHDVGDEVLRAVA 166

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L  +      V RLGGEEFA        +     A  +RK I N  + ++    + IT
Sbjct: 167 SCLKDMTRYHDVVARLGGEEFAVVTPNMDAELLGKFAERIRKAIANMSV-LTGNVRLKIT 225

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+A    +E       RAD+ LY AK+ GRNRV
Sbjct: 226 TSVGLAVWDRQETAEDFYRRADRQLYEAKRQGRNRV 261


>gi|319780749|ref|YP_004140225.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166637|gb|ADV10175.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 398

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 80/157 (50%), Gaps = 10/157 (6%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D LSGLLN   F       +    S    +++V  D+D+FK +ND  GH  GD+VIA  +
Sbjct: 225 DPLSGLLNRRGFEERGMLLLRHCASARFPVALVLADLDHFKALNDVHGHGAGDRVIADFA 284

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHI 218
            +L    G     GR+GGEEFA     S    A + A  +R +     ++ +  G    +
Sbjct: 285 AKLRSAAGARGVAGRIGGEEFAVLLPLSDLAAARLFAEAVRTVYSAGHVDGLPQG--TKV 342

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T S G+A R   E +  ++ RAD ALY AKK+GR+ V
Sbjct: 343 TASFGVAARSGDEALEPLMRRADDALYKAKKNGRDSV 379


>gi|307726295|ref|YP_003909508.1| diguanylate cyclase [Burkholderia sp. CCGE1003]
 gi|307586820|gb|ADN60217.1| diguanylate cyclase [Burkholderia sp. CCGE1003]
          Length = 368

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 89/175 (50%), Gaps = 21/175 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ QL   D L+GL N   F   L         Y   L+ +F D+D FK+IND +GH  
Sbjct: 188 ERLKQLGMTDPLTGLSNRRYFDERLREELVRAARYGVPLACLFIDVDSFKRINDTYGHQT 247

Query: 151 GDKVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           GD+ +A ++    Q V +  T   V R GGEEFAA   G    +A  +A  +R  +E  Q
Sbjct: 248 GDRALAAVAACVRQQVRLGDT---VARYGGEEFAALVQG-DRADAQTVAERVRVAVEKLQ 303

Query: 208 INISSGPSIHITISAGIAERC----HKEPIS---TIIYRADQALYVAKKSGRNRV 255
           +    G  I +T+S G+A R       E ++    ++  AD+A+Y AK +GRNRV
Sbjct: 304 LLDDDGERIALTVSIGVAARTVSGSPAEAVALGRAMMDEADRAMYQAKHNGRNRV 358


>gi|291287062|ref|YP_003503878.1| response regulator receiver modulated diguanylate cyclase
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884222|gb|ADD67922.1| response regulator receiver modulated diguanylate cyclase
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 424

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 94/172 (54%), Gaps = 6/172 (3%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           EL    +++++L     L  ++N+   +S    Y  K S++  D D FK +N++  + +G
Sbjct: 257 ELIAVTDKLTRLHNRQKLDQVMNYE--MSQFQRYGTKFSVIIIDADDFKTVNNSHSYHIG 314

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DK++  +S  L++        GR GG+EF      +SE +A I+A  LRK I      I 
Sbjct: 315 DKILVKISGILLMNVRDSDTCGRWGGDEFLVILPKASEGDAVIVAEKLRKTIAERDYGID 374

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +    ++T+S G+AE    E ++ ++  A +ALY AKKSG+N +V +S+ +N
Sbjct: 375 N----NVTVSIGVAEIEKGETVAKLVASAGKALYKAKKSGKNCIVAYSETDN 422


>gi|220932964|ref|YP_002509872.1| diguanylate cyclase [Halothermothrix orenii H 168]
 gi|219994274|gb|ACL70877.1| diguanylate cyclase [Halothermothrix orenii H 168]
          Length = 510

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 9/172 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
           YN+  +++  D L+GL N   F+  +  Y       N  LSI+  DID FK  ND  GH 
Sbjct: 336 YNKTQKMAITDGLTGLYNQRYFLEVIDKYFKTAREKNRHLSILIMDIDNFKNYNDVNGHL 395

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI- 208
            G+  ++ L+D +           R GGEEFA     ++  EA  LA  +RK IE +   
Sbjct: 396 AGNTALSRLTDIIKKSIRKKDVPCRFGGEEFAVLFPDTTRDEAYNLAETIRKNIEKTPFY 455

Query: 209 NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           N    P   +T+S G+A      + +  ++ +ADQALY AK +G+NR+  FS
Sbjct: 456 NEDVQPGGRLTVSLGLAIFPDDSQEVKDLLDKADQALYKAKNNGKNRIEFFS 507


>gi|82703806|ref|YP_413372.1| diguanylate cyclase [Nitrosospira multiformis ATCC 25196]
 gi|82411871|gb|ABB75980.1| response regulator receiver modulated diguanylate cyclase
           [Nitrosospira multiformis ATCC 25196]
          Length = 302

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 88/162 (54%), Gaps = 10/162 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q +R D L+G+ N ++ +  L    ++        S++  D+D+FK+IND +GHP GD++
Sbjct: 130 QATR-DYLTGVWNRASIMDYLQKELKRGARQDICTSVMIADLDHFKRINDTYGHPTGDEI 188

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   + ++  V      VGR GGEEF   A G    EA  L   +   I +   N  +G 
Sbjct: 189 LQEAARRMSGVLRGYDRVGRYGGEEFLITASGCDWSEALALGERICSSIRSEPANSRAG- 247

Query: 215 SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
            I +T+S GIA  C +   I  +I  ADQALY AK++GRN+V
Sbjct: 248 QIDMTVSIGIATSCGQVNDIGELIAAADQALYQAKEAGRNQV 289


>gi|254456813|ref|ZP_05070241.1| ggdef domain protein protein [Campylobacterales bacterium GD 1]
 gi|207085605|gb|EDZ62889.1| ggdef domain protein protein [Campylobacterales bacterium GD 1]
          Length = 720

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 8/161 (4%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+G +N   F       +     YN  LS +  DID+FK IND +GH  GD+++   
Sbjct: 561 IDPLTGAVNRRKFEELSMQELERSNRYNSDLSFLMLDIDHFKSINDTYGHAAGDEILKHF 620

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +   + +  +   V R+GGEEF      ++   A I A   RK I  S++ +     I  
Sbjct: 621 ASICLDMARSLDIVARVGGEEFVVMLPETTIDGAYIFAERFRKEIYTSEVTVDEQI-IKY 679

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++S GIA   + + +  I+ RAD+ALY AK+SGRN  + + 
Sbjct: 680 SVSIGIAILDNDKDVKDILQRADKALYKAKESGRNCTIVYK 720


>gi|254241535|ref|ZP_04934857.1| hypothetical protein PA2G_02235 [Pseudomonas aeruginosa 2192]
 gi|126194913|gb|EAZ58976.1| hypothetical protein PA2G_02235 [Pseudomonas aeruginosa 2192]
          Length = 525

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 8/161 (4%)

Query: 103 LSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N  +F+        +   +      +  DID+FK IND+ GH  GD+ +
Sbjct: 360 LASTDTLTGLHNRHSFLHQAELMLKAAERFRHPCVALMLDIDHFKNINDSHGHLTGDRAL 419

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +++ L         +GRLGGEEFAA     S  +A  +A  LR  +E  +++   G  
Sbjct: 420 QRVAETLRQGLREVDLLGRLGGEEFAALLPEVSLDQALDVAERLRAGVEALRVSNPDGEP 479

Query: 216 IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + +T+S G+A  R   + + +++ RAD ALY AK  GRNR 
Sbjct: 480 LRMTVSIGVALRRDAGDDLESLLVRADSALYQAKSGGRNRT 520


>gi|297623029|ref|YP_003704463.1| diguanylate cyclase [Truepera radiovictrix DSM 17093]
 gi|297164209|gb|ADI13920.1| diguanylate cyclase [Truepera radiovictrix DSM 17093]
          Length = 192

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 15/171 (8%)

Query: 96  SYNRISQLSR---IDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDN 145
           +  R +QL R    D L+G+ N        ++ ++ L        ++  DID+FK +ND 
Sbjct: 21  ATERAAQLERQAFFDALTGVANRWRAEALLASRLADLRCGAPPFGVLVVDIDHFKGVNDR 80

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH VGD V+  ++ QL     +   + R GGEEF   A  + E E A L   LR+ +  
Sbjct: 81  YGHGVGDAVLREVAAQLSRHVRSGDTLARWGGEEFVVLAPAAGEGELARLGERLRQAVAA 140

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +   +G ++ +++    A R  K+  +T+I RAD+ALY AK++GRNR V
Sbjct: 141 APL---AGHAVTVSVGGACATR--KDVAATLIARADRALYRAKRAGRNRTV 186


>gi|261823092|ref|YP_003261198.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
 gi|261607105|gb|ACX89591.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
          Length = 362

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 97/184 (52%), Gaps = 11/184 (5%)

Query: 79  SLLLGYISGSILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           S++L  I GS+L  L   Y   +  ++R D L+G L   AF  +              +S
Sbjct: 177 SVVLFAILGSLLSLLAKKYLIELPIIARYDDLTGYLRRDAFFLATNKAFSIANLTKRPVS 236

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  DID+FK +ND+FGH VGD  + F++D     F      GR+GG+EFA     +   
Sbjct: 237 VMLIDIDHFKLVNDSFGHSVGDDALRFVADTFKKSFRREDIFGRIGGDEFAIVLPNTGLD 296

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKK 249
           +A  + +  R+ I ++  + +SG  I +T+S G+ E     E +S ++ RAD  LY+AKK
Sbjct: 297 DAYTIVDRARERISDTPCDTASG-KIRLTVSIGLVEYHTAGEDLSEVMKRADDNLYIAKK 355

Query: 250 SGRN 253
           + RN
Sbjct: 356 T-RN 358


>gi|332993458|gb|AEF03513.1| GGDEF domain-containing protein [Alteromonas sp. SN2]
          Length = 987

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 8/173 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           K+L     +++ +S  D L+GL N   F S       S   Y +  S++  DID+FKQIN
Sbjct: 815 KDLEDVVEKLTLISSQDPLTGLKNRRYFTSRAHEAWDSYERYAQAFSLLIVDIDWFKQIN 874

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGD V+  +++ L         + R GGEEF       +  E   +   LRK +
Sbjct: 875 DTYGHHVGDLVLVKVAELLRTNLRNSDVICRWGGEEFLILLPQLNVHECYWVGEKLRKSV 934

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E +  +   G  +++TI+AGIA+    + +   I+ AD+ LY  K  GRN VV
Sbjct: 935 EKASFHC-EGYDVNVTITAGIADIRESDSVEQCIHAADKKLYKGKADGRNAVV 986


>gi|330828098|ref|YP_004391050.1| GGDEF domain-containing protein [Aeromonas veronii B565]
 gi|328803234|gb|AEB48433.1| GGDEF domain protein [Aeromonas veronii B565]
          Length = 307

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 9/172 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQIND 144
           S +  LF    ++ Q +  D L+ L N   F   L  + E+    +++  D+D+FK IND
Sbjct: 133 STMHHLFHINTQLRQQALFDDLTRLPNRRYFHQQL--FLEQGICHTLILLDLDHFKLIND 190

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH +GD+V+    + L           R+GGEEFA     + E E   LAN L     
Sbjct: 191 NYGHDIGDRVLQQFGELLQQHCPPGALAARVGGEEFALLLPVAHEAELQQLANTLLTATR 250

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                I+  P+  +T+S G+  R  KEP  ++  R DQALY AK++GRN  V
Sbjct: 251 T----IAPDPTHTMTVSLGVGIREPKEPAVSLFKRVDQALYGAKEAGRNCAV 298


>gi|311696618|gb|ADP99491.1| diguanylate cyclase (GGDEF domain) [marine bacterium HP15]
          Length = 429

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 81/169 (47%), Gaps = 11/169 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + QLS  D L+GL N    +  L         Y +  S++  DID+FK IND++GHP GD
Sbjct: 256 LEQLSITDELTGLYNRRYMLRKLQESVAQGERYGDTFSLISLDIDFFKTINDSYGHPTGD 315

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+   +D +         V R GGEEF      +   EA  +A  LR  ++        
Sbjct: 316 AVLQRFADIIESRTRKSDIVARTGGEEFIIFMPNTGLSEAGHVAESLRIALQTESFVSDE 375

Query: 213 GPSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNRVVC 257
           G +   T SAG+      E  +T    ++   DQ++Y AK++GRNRVV 
Sbjct: 376 GETFGTTFSAGVVNWSGAESQTTSVRDLLSACDQSMYAAKRAGRNRVVA 424


>gi|298505985|gb|ADI84708.1| sensor diguanylate cyclase, GAF domain-containing [Geobacter
           sulfurreducens KN400]
          Length = 352

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 93/176 (52%), Gaps = 11/176 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           + R   ++  D L+GL NH  F       ++    Y + L+I+  D+D FK+ ND +GHP
Sbjct: 177 HARTRLMAITDSLTGLYNHRYFQQIFSRELNRAKRYEKPLAIIMLDVDDFKRFNDTYGHP 236

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQI 208
            GDKV+A + D L     +  F  R GGEEF    L  +E ++A+ +A  LR+++E   +
Sbjct: 237 HGDKVLAAMGDFLGEALRSSDFAFRYGGEEF-IVLLPETEFDSALQVAERLRELVERRSL 295

Query: 209 NISSGPSIH-ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           ++  G +   +T+S G+A      E    ++ R D  LY AK+ G+NRV    + E
Sbjct: 296 DVLKGLAPQGVTVSVGVASFPRDGESRGDMLKRVDDLLYRAKEFGKNRVYSRREDE 351


>gi|283850446|ref|ZP_06367734.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio sp. FW1012B]
 gi|283574017|gb|EFC21989.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio sp. FW1012B]
          Length = 430

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 79/157 (50%), Gaps = 11/157 (7%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N +         +   G + + L+I+ FDID+FK +ND +GHP GD V+  L+
Sbjct: 276 DALTGIANRAGIDELLSRELHRTGRHADPLTIIMFDIDHFKAVNDTYGHPAGDAVLVALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +         +GR GGEEF   A  +  +    LA  LR  +E +    +      +T
Sbjct: 336 RLVADHVRDHDTLGRYGGEEFLIVAPQTDPEAGRQLAERLRAAVEKTVFPAAG----RVT 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S G+A          ++ RAD+ALY AK++GRNRV 
Sbjct: 392 CSFGVATGHPGANARALVARADEALYKAKQTGRNRVA 428


>gi|104781380|ref|YP_607878.1| diguanylate cyclase [Pseudomonas entomophila L48]
 gi|95110367|emb|CAK15075.1| putative diguanylate cyclase (GGDEF) domain [Pseudomonas
           entomophila L48]
          Length = 468

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 88/169 (52%), Gaps = 13/169 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE---------KLSIVFFDIDYFKQINDNFGHP 149
           R++  + ID L+G L  SAF     +  E          L+++  DID+FK IND  GH 
Sbjct: 291 RLAHQASIDHLTGALTRSAFTQRANTLLESRQRDAQPMPLTLMMLDIDHFKSINDRHGHA 350

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD+V+   S  L           RLGGEEFA    G + ++A   A  LR+ +++  I+
Sbjct: 351 LGDQVLRQFSLTLQDQLHEGELFARLGGEEFAIVMPGLAPEQARFSAERLRRTVQDLHIS 410

Query: 210 ISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255
             +   + IT+S G+A    + P S+   ++ +AD ALY AK  GRNR+
Sbjct: 411 -QADQRLQITVSIGLAGCSTEYPSSSLDELLAQADLALYRAKAHGRNRI 458


>gi|81299301|ref|YP_399509.1| diguanylate cyclase with PAS/PAC sensor [Synechococcus elongatus
           PCC 7942]
 gi|81168182|gb|ABB56522.1| diguanylate cyclase with PAS/PAC sensor [Synechococcus elongatus
           PCC 7942]
          Length = 681

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 96/170 (56%), Gaps = 10/170 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
             +S+ ++ D L+GL+N    I+ + +       + ++ +++F D+D FK +ND+FGH  
Sbjct: 514 QELSRQAKTDELTGLINRREAIARIQALCALDRRHGKEFAVLFCDLDCFKDVNDHFGHLA 573

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQIN 209
           GD V+  ++ ++ +   +  F  R+GG+EF     G  S + A ++A  LR ++    I+
Sbjct: 574 GDTVLQVVARRIKLAIRSNDFAARIGGDEFLVVLQGVHSLKNAVVIAEKLRYVVAQP-IS 632

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +G  +  T++ G+      E I T+I RAD A+Y  K+SGR+RV+ F+
Sbjct: 633 TDAG-CVAQTMTIGVTLIQPAETIDTLIARADAAMYQGKQSGRDRVIPFA 681


>gi|56751038|ref|YP_171739.1| hypothetical protein syc1029_c [Synechococcus elongatus PCC 6301]
 gi|56685997|dbj|BAD79219.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 686

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 96/170 (56%), Gaps = 10/170 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
             +S+ ++ D L+GL+N    I+ + +       + ++ +++F D+D FK +ND+FGH  
Sbjct: 519 QELSRQAKTDELTGLINRREAIARIQALCALDRRHGKEFAVLFCDLDCFKDVNDHFGHLA 578

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQIN 209
           GD V+  ++ ++ +   +  F  R+GG+EF     G  S + A ++A  LR ++    I+
Sbjct: 579 GDTVLQVVARRIKLAIRSNDFAARIGGDEFLVVLQGVHSLKNAVVIAEKLRYVVAQP-IS 637

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +G  +  T++ G+      E I T+I RAD A+Y  K+SGR+RV+ F+
Sbjct: 638 TDAG-CVAQTMTIGVTLIQPAETIDTLIARADAAMYQGKQSGRDRVIPFA 686


>gi|332141148|ref|YP_004426886.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551170|gb|AEA97888.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 996

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 10/174 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           K+L     ++++LS  D L+GL N   F             +    S++  DID+FK+IN
Sbjct: 824 KDLEDVVEKLTRLSTQDSLTGLKNRRYFTQRAKAEWQEFQRHGRTFSLLLLDIDFFKRIN 883

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH +GD V+  ++  L         + R GGEEF        EQEA  +A  LRK +
Sbjct: 884 DEYGHQIGDAVLVKIAKTLENNLRESDVIARWGGEEFLILLPSLKEQEAYWVAEKLRKAV 943

Query: 204 ENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             + + I S P  +++TI+ G+A+  + + I   I+  D+ LY  K++GRN VV
Sbjct: 944 --ASLVIDSPPHQLNVTITCGVADIKNYDSIEACIHAVDKKLYKGKEAGRNAVV 995


>gi|297538153|ref|YP_003673922.1| diguanylate cyclase [Methylotenera sp. 301]
 gi|297257500|gb|ADI29345.1| diguanylate cyclase [Methylotenera sp. 301]
          Length = 639

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 8/185 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           ++   +++L    +++S+   ID L+G+LN           IS        L +   DID
Sbjct: 447 VAQQKIQQLQAELSQLSEKVSIDQLTGVLNRRGLDEAMLREISRAQRGASSLCVALLDID 506

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK  NDN+GH VGD  +  L+  +           R GGEEF      ++   A    +
Sbjct: 507 NFKHFNDNYGHNVGDTALQHLAKVIQETLRPTDIAARFGGEEFVILLPDTTIDAAVETIS 566

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            L++ +   Q  + +   + IT SAGIA     E  +TI+ RADQA+Y+AKKSG+NRV+ 
Sbjct: 567 RLQRAL-TKQFFLGNNERLLITFSAGIALFRETEEQATILNRADQAMYLAKKSGKNRVMT 625

Query: 258 FSDIE 262
             D+E
Sbjct: 626 EVDLE 630


>gi|39996968|ref|NP_952919.1| GGDEF domain-containing protein [Geobacter sulfurreducens PCA]
 gi|39983856|gb|AAR35246.1| GGDEF domain protein [Geobacter sulfurreducens PCA]
          Length = 342

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 93/176 (52%), Gaps = 11/176 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           + R   ++  D L+GL NH  F       ++    Y + L+I+  D+D FK+ ND +GHP
Sbjct: 167 HARTRLMAITDSLTGLYNHRYFQQIFSRELNRAKRYEKPLAIIMLDVDDFKRFNDTYGHP 226

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQI 208
            GDKV+A + D L     +  F  R GGEEF    L  +E ++A+ +A  LR+++E   +
Sbjct: 227 HGDKVLAAMGDFLGEALRSSDFAFRYGGEEF-IVLLPETEFDSALQVAERLRELVERRSL 285

Query: 209 NISSGPSIH-ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           ++  G +   +T+S G+A      E    ++ R D  LY AK+ G+NRV    + E
Sbjct: 286 DVLKGLAPQGVTVSVGVASFPRDGESRGDMLKRVDDLLYRAKEFGKNRVYSRREDE 341


>gi|194367647|ref|YP_002030257.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
 gi|194350451|gb|ACF53574.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
          Length = 400

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 11/168 (6%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYN--------EKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +R D L+GLLN SA ++  G             L+++  D+D+FKQ+ND  GH  GD+V+
Sbjct: 222 ARTDGLTGLLNRSAVLAD-GQVQLQRSRRQGRPLALLLVDVDHFKQVNDRCGHLAGDQVL 280

Query: 156 AFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
              +D L   V G    +GR GGEEF     G +++ A   A  +R  ++     ++SGP
Sbjct: 281 RHFADLLQHCVQGHDHLLGRYGGEEFVLVLQGRTQRAAMERAVAIRTRLQQYPALLASGP 340

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            + +T S G+A    +  +ST++  AD ALY AK +GR+R+VC +  E
Sbjct: 341 -VSVTASIGLAMDEGQGDLSTLLAAADAALYRAKAAGRDRLVCATPAE 387


>gi|237793653|ref|YP_002861205.1| GGDEF/HD domain protein [Clostridium botulinum Ba4 str. 657]
 gi|229263853|gb|ACQ54886.1| GGDEF/HD domain protein [Clostridium botulinum Ba4 str. 657]
          Length = 567

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 90/172 (52%), Gaps = 9/172 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  L   D L+ + NH  F  +L          NE LS++F DIDYFK  ND +GH  G
Sbjct: 189 KLESLVNKDGLTDVYNHRFFHDALSKKVIECEEENEALSMIFIDIDYFKHYNDLYGHQKG 248

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-I 210
           D+V+  + + L         V R GGEEF+     +SE+EA  +A ++RK IE +     
Sbjct: 249 DQVLKTIGEILKNNTRKEDIVARYGGEEFSVLLPNTSEEEAINIAENIRKKIEYTYFEGE 308

Query: 211 SSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261
            + P+ ++T+S GI+   +K      +I  AD ALY AK   +NRV  ++ I
Sbjct: 309 ENQPNGNLTVSMGISVYPYKAKSDMELIKSADDALYRAKFFNKNRVEAYTSI 360


>gi|163782642|ref|ZP_02177639.1| diguanylate cyclase (GGDEF domain) [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882215|gb|EDP75722.1| diguanylate cyclase (GGDEF domain) [Hydrogenivirga sp. 128-5-R1-1]
          Length = 283

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 12/159 (7%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+G  N           I     Y   LS++F D+D FK++ND +GH  GD+V+
Sbjct: 126 LADTDSLTGFYNRRKIEEILAKEIERSRRYGNPLSVLFIDVDNFKELNDTYGHKSGDEVL 185

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +++ +        +VGR GGEEF      +  Q A  +A  +RK +E           
Sbjct: 186 RKIAEIIKSELRRTDYVGRFGGEEFMVILPETDSQSALRVAERIRKRVEREDFKTGK--- 242

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +T+S G+ E    + ++T+  R D+A+Y+AK+ G+NR
Sbjct: 243 --VTVSVGVTELKEGDDLNTLFNRVDRAMYLAKERGKNR 279


>gi|325678897|ref|ZP_08158495.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
 gi|324109401|gb|EGC03619.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
          Length = 337

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 9/225 (4%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           FS+ +A +  I+  ++ Y G  P Y  E        L+  S  +  L+ Y +  +++ + 
Sbjct: 118 FSVSMALLSLISTGYVAYFG--PVYEREQKYAAIFWLINASSVMGFLIFY-TNFLIQTII 174

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFGHPVG 151
            S  ++++++ +D L+GL N    I+ L   +E  S  +    DID FK+IND +GH  G
Sbjct: 175 SSEEKLNEIALVDRLTGLYNRHYMINCLDKMDEDYSSAYLAMADIDDFKKINDTYGHNAG 234

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  +S+++         V R GGEEF      + EQ   ++ N LRK I + +++  
Sbjct: 235 DVVLEKVSEKMKSE-CRGCTVSRWGGEEFLILIPPAVEQPVELIEN-LRKNIASEKVHYE 292

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               I +TI+AGI+ R  +  I   I   D  LY  K SG+N+VV
Sbjct: 293 D-KEISVTITAGISPRTDEHSIDQWIQTVDGKLYDGKHSGKNKVV 336


>gi|27366763|ref|NP_762290.1| GGDEF domain-containing protein [Vibrio vulnificus CMCP6]
 gi|37676475|ref|NP_936871.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|27358330|gb|AAO07280.1| GGDEF domain protein [Vibrio vulnificus CMCP6]
 gi|37201017|dbj|BAC96841.1| GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 414

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 24/178 (13%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +L+ ID L+ L +  A    +     + SI   D+D+FK+ ND +GH  GD V+  +  +
Sbjct: 236 ELAFIDVLTQLPSRRALEMDVKHLGRRFSIAMIDVDHFKKFNDTYGHDTGDDVLKLVGSR 295

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPS--- 215
           L+++ G    V R GGEEF     G + +E     +D+R+ I N  +   N ++ PS   
Sbjct: 296 LLLIKGGAK-VYRYGGEEFTVVFKGKTSKEVQGYLDDIREDIANYDLVLRNDTTRPSKAS 354

Query: 216 ---------------IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                          +++T+S G+++ R  K+P  TI   AD+ALY AKK+GRN+V+ 
Sbjct: 355 EGKKRRGTQENTMNTVNVTVSIGVSDSRSSKDP-DTIRSLADEALYKAKKAGRNQVMT 411


>gi|126668320|ref|ZP_01739279.1| hypothetical protein MELB17_11535 [Marinobacter sp. ELB17]
 gi|126627237|gb|EAZ97875.1| hypothetical protein MELB17_11535 [Marinobacter sp. ELB17]
          Length = 308

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/174 (36%), Positives = 92/174 (52%), Gaps = 10/174 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148
            ++ + Q S  D L+G+ N  A   +L       G +NE  S++  D+D+FK +NDN GH
Sbjct: 136 QFSAMEQASLTDSLTGIGNKRAMDEALQKAQLLAGRHNETYSLILCDLDHFKAVNDNCGH 195

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQ 207
            VGD V+   ++ L     +   V R GGEEF A  L  ++Q AA+ +A  +R  I   Q
Sbjct: 196 VVGDIVLKRAAEALESAVRSSDSVYRFGGEEF-AVLLPHTDQLAAVDVAERIRLAIAALQ 254

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           I+ S   S+ +TIS G+A     E     + RAD+ALY AK  GRN    F+ I
Sbjct: 255 ID-SEEHSVAVTISCGVALHRAGEGSGQWLARADEALYRAKDQGRNCTRVFATI 307


>gi|120553290|ref|YP_957641.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120323139|gb|ABM17454.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 523

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 83/170 (48%), Gaps = 12/170 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGD 152
           + + S  D L+GL N   F        E        L ++ FDID+FK  ND  GH  GD
Sbjct: 355 LQRFSYEDSLTGLKNRRYFDELFRHEREVSARSDRPLCLLIFDIDHFKLFNDCHGHEAGD 414

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  + D L   F     V R GGEEF+    G+S  EA   A  LR  I    +    
Sbjct: 415 QALRMVGDVLATCFRGSDTVCRYGGEEFSVLMPGASLDEARQRAEQLRAAISAEPVEHRG 474

Query: 213 GPSIHITISAGIAERCHKE--PISTIIYR-ADQALYVAKKSGRNRVVCFS 259
                +TISAGIA  C +E  P    ++R ADQALY AK++GRNRVV  S
Sbjct: 475 ENLGSLTISAGIA--CWRENCPEFDELFRAADQALYQAKETGRNRVVAAS 522


>gi|78486192|ref|YP_392117.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78364478|gb|ABB42443.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2]
          Length = 620

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 91/175 (52%), Gaps = 15/175 (8%)

Query: 101 SQLSRI---DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
           SQL  +   D L+G+ N   F  +L         Y    S+ F DID+FK IND +GH V
Sbjct: 451 SQLEHLIIHDELTGVYNRHYFNRTLEQEIKRHQRYQSPFSMAFMDIDHFKMINDTYGHDV 510

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  L+  +  +  +     R+GGEEF      +S + A I++  +R  +E   I+ 
Sbjct: 511 GDAVLVSLAKNISSLLRSTDVFCRVGGEEFVIMMPETSLENALIISERIRSTVEG--ISS 568

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
              P   ITIS G+ E    + + +   RAD+ALY AK++GRNR+   + +E+ T
Sbjct: 569 KDVPE-KITISMGLVELNSWDNVQSFYKRADEALYKAKENGRNRIE--TQVEDRT 620


>gi|52859175|ref|ZP_00055746.3| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 348

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 8/166 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+   N   F    G             +++  DID+FK+IND +GH  GD
Sbjct: 181 LEELASRDSLTQTANRRHFEHLAGLELDHARRMGRSFALLALDIDHFKRINDTWGHAAGD 240

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +   ++   +       +GR+GGEEFA A   +    A ++A  LR  +    +  + 
Sbjct: 241 EALKAFANACRLSLREYDILGRIGGEEFAVALPNTGPDGARVIAERLRAAVAELVVRPAK 300

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           G    +T+S G+A+ R     I T++ RADQALY AK +GRNRVV 
Sbjct: 301 GELFELTVSIGVAQLREGDLTIDTLLERADQALYRAKHAGRNRVVA 346


>gi|193078679|gb|ABO13734.2| putative domain GGDEF protein [Acinetobacter baumannii ATCC 17978]
          Length = 397

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 88/167 (52%), Gaps = 3/167 (1%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           I +LS+ID L+ +LN  +  + L + +E+    +++  DID+FK+IND +GH  GD+V+ 
Sbjct: 227 IQRLSQIDPLTNVLNRRSLNTHLEALHEQQFDYAVILLDIDHFKKINDIYGHHQGDQVLI 286

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++  L         +GR GGEEF      +   +A  +A   R+ ++   I  +    I
Sbjct: 287 EIARCLSENLRNEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRQALQELTIFNNQNIQI 346

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           H++ S GI+          +I +ADQALY  K SGRN+V  F  +  
Sbjct: 347 HVSASFGISSSAFANDPYLVIRQADQALYAVKASGRNQVRTFHQLPQ 393


>gi|311696694|gb|ADP99567.1| GGDEF domain-like protein [marine bacterium HP15]
          Length = 409

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 8/162 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q++  D L+GLLN           +     Y   +++++ D D+FK +ND +GH  GD
Sbjct: 234 LEQMATRDPLTGLLNRREMSRVLDEELQRARRYQRPMAVLWVDFDHFKDVNDTYGHAAGD 293

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  +S  L+    +   +GR GGEEF         +EA   A  LR+ +      + +
Sbjct: 294 SVLRAISRLLLGSVRSVDSIGRFGGEEFVIVLPEMDLEEAQETAERLRRKVAEEPQPLGN 353

Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
           G ++ +TIS G+A    H +  ST+   AD+A+Y+AK  GRN
Sbjct: 354 GEAVPLTISVGVAVYPDHGQTASTLCAAADKAMYLAKDRGRN 395


>gi|254521531|ref|ZP_05133586.1| diguanylate cyclase (ggdef domain) with gaf sensor
           [Stenotrophomonas sp. SKA14]
 gi|219719122|gb|EED37647.1| diguanylate cyclase (ggdef domain) with gaf sensor
           [Stenotrophomonas sp. SKA14]
          Length = 356

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 84/167 (50%), Gaps = 21/167 (12%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++ SR D L+GL N  A  ++L       G+      +   DID+FK IND  GH  GD
Sbjct: 196 LAEQSRTDALTGLPNRRAMAAALEEAVAMNGAQPGAACVALLDIDHFKHINDFQGHATGD 255

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR---KIIENSQIN 209
           +V+A L   L   F       R GGEEF           A + A DLR   +  E  ++ 
Sbjct: 256 RVLAELGTLLRTHFAGRGMAARYGGEEFV----------AVMPATDLRAAERQCEFLRLA 305

Query: 210 ISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++  P    +TIS G+A+    E +  ++ RAD+ALY AK +GRNRV
Sbjct: 306 VAELPLGFPVTISIGVAQHQSGESVDQMLARADKALYRAKGNGRNRV 352


>gi|187777066|ref|ZP_02993539.1| hypothetical protein CLOSPO_00611 [Clostridium sporogenes ATCC
           15579]
 gi|187773994|gb|EDU37796.1| hypothetical protein CLOSPO_00611 [Clostridium sporogenes ATCC
           15579]
          Length = 565

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 89/173 (51%), Gaps = 9/173 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++  L   D L+ + NH  F  +L          NE LS++F DIDYFK  ND +GH  
Sbjct: 186 KKLESLVNRDGLTDVYNHRFFHDALSKEIIECEEKNEALSMIFIDIDYFKHYNDLYGHQK 245

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209
           GDKV+  + + L         V R GGEEFA     +SE+EA  +A  +R+ IE +    
Sbjct: 246 GDKVLKTIGEILKNNTREGDIVARYGGEEFAVLLPNTSEEEAINIAEKIRRKIEYTYFEG 305

Query: 210 ISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261
             + P+ ++T+S GI+   +K      +I  AD ALY AK   +NRV  ++ I
Sbjct: 306 EENQPNGNLTVSMGISVYPYKAKSDMELIKSADDALYRAKFFNKNRVEAYTSI 358


>gi|157693778|ref|YP_001488240.1| diguanylate cyclase [Bacillus pumilus SAFR-032]
 gi|157682536|gb|ABV63680.1| possible diguanylate cyclase [Bacillus pumilus SAFR-032]
          Length = 529

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 84/163 (51%), Gaps = 6/163 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
             + + + ID L+ + N S+FI      L    +  +++ FDID+FKQIND  GH +GD+
Sbjct: 354 EELERRAYIDGLTNIFNRSSFIERTQMILEEDAQDTAVMLFDIDFFKQINDTHGHHIGDE 413

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  +              GR GGEEFA      S +EA  +A  +R   E S    +  
Sbjct: 414 ALRHVVTICQQHLQMDDLFGRYGGEEFAICLPHHSFEEACHIAERIRHSFEMSFFE-NEE 472

Query: 214 PSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRV 255
             + +T S GIA   +   +  T+++ ADQALY++K+ GRNR+
Sbjct: 473 EKVRVTASFGIAHTAYDPNVLETLLFEADQALYMSKRQGRNRI 515


>gi|268679299|ref|YP_003303730.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617330|gb|ACZ11695.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 417

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 8/164 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I  +++ D LSGL N   F  ++  Y        E  ++   D+D FKQIND  GH VG
Sbjct: 252 KIKDMAQNDFLSGLANRRYFFDAMQEYFKEARKQKESFALGLIDVDKFKQINDTLGHRVG 311

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+VI  L+  L        F+ R+GG+EF        +++A      L+  +   +I +S
Sbjct: 312 DQVIVALAKTLKEQLTHDHFIARIGGDEFCLVLKDIEQKKALEFFIKLQCAVAKIEIPVS 371

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   + +++S G+      E +  +I +AD+ALY AKK+GRNRV
Sbjct: 372 AEEKVGVSVSIGVT-FNDLESVEEMINQADKALYKAKKNGRNRV 414


>gi|325982459|ref|YP_004294861.1| periplasmic/7TM domain sensor diguanylate cyclase [Nitrosomonas sp.
           AL212]
 gi|325531978|gb|ADZ26699.1| periplasmic/7TM domain sensor diguanylate cyclase [Nitrosomonas sp.
           AL212]
          Length = 568

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 84/159 (52%), Gaps = 10/159 (6%)

Query: 106 IDCLSGLLNHSAFIS--------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           ID L+ L N  AF          SL S     S++  DID FK +NDN+GHPVGD V+  
Sbjct: 405 IDLLTNLNNRRAFYKFVQPMWAISLRS-KSSTSVIILDIDDFKLLNDNYGHPVGDLVLVR 463

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           L++ +     +   + R GGEEF      +   +A  +A+ +RK I   QI+I +G  I 
Sbjct: 464 LAETIQKEARSGDILARWGGEEFLIFLPETQLADAITIADRMRKRITTIQISIDNGEKIS 523

Query: 218 ITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
            T S G+A        ++ +I +AD+ LY AKK GRNRV
Sbjct: 524 FTASFGVATTQDINVSLNELIAQADRQLYHAKKKGRNRV 562


>gi|15598066|ref|NP_251560.1| hypothetical protein PA2870 [Pseudomonas aeruginosa PAO1]
 gi|116050873|ref|YP_790304.1| hypothetical protein PA14_26970 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254235857|ref|ZP_04929180.1| hypothetical protein PACG_01800 [Pseudomonas aeruginosa C3719]
 gi|9948959|gb|AAG06258.1|AE004713_7 hypothetical protein PA2870 [Pseudomonas aeruginosa PAO1]
 gi|115586094|gb|ABJ12109.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126167788|gb|EAZ53299.1| hypothetical protein PACG_01800 [Pseudomonas aeruginosa C3719]
          Length = 525

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 8/161 (4%)

Query: 103 LSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N  +F+        +   +      +  DID+FK IND+ GH  GD+ +
Sbjct: 360 LASTDTLTGLHNRHSFLHQAELMLKAAERFRHPCVALMLDIDHFKNINDSHGHLTGDRAL 419

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +++ L         +GRLGGEEFAA     S  +A  +A  LR  +E  +++   G  
Sbjct: 420 QRVAETLRQGLREVDLLGRLGGEEFAALLPEVSLDQALDVAERLRAGVEALRVSNPDGEP 479

Query: 216 IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + +T+S G+A  R   + + +++ RAD ALY AK  GRNR 
Sbjct: 480 LRMTVSIGVALRRDAGDDLESLLVRADSALYQAKSGGRNRT 520


>gi|326318686|ref|YP_004236358.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375522|gb|ADX47791.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 568

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 116/224 (51%), Gaps = 31/224 (13%)

Query: 57  PFY--GLEYILVENLSLVIISITISLL-----LGYISGSI---LKELFISYNRISQ---- 102
           P Y  G + + V  L+    S+T SLL     L  ++ S+   ++E  ++ ++ +Q    
Sbjct: 345 PRYPDGTDTLEVAQLNRSFQSMTASLLEREQELSRLNTSLENQVRERTLALHQANQELEN 404

Query: 103 LSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N   F  +L +Y+        + +++  D D+FK++ND  GH  GD V+
Sbjct: 405 LAVRDPLTGLYNRRRFDEALQAYSARCRELGHRFALMIVDADHFKRVNDTHGHQTGDAVL 464

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGP 214
             L+  +     +  FV R GGEEF          +E  ++A  +R  + ++       P
Sbjct: 465 RHLAGVITGCMRSTDFVARFGGEEFVVLMPEPRDREEGRLVAEKIRLAVGHTPF-----P 519

Query: 215 SI-HITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255
            + H+T+S G+A  CH   EP+++I+ RAD+ALY AK  GR+RV
Sbjct: 520 GVGHLTVSIGLAF-CHGGGEPLASILERADKALYQAKGEGRDRV 562


>gi|156977902|ref|YP_001448808.1| hypothetical protein VIBHAR_06694 [Vibrio harveyi ATCC BAA-1116]
 gi|156529496|gb|ABU74581.1| hypothetical protein VIBHAR_06694 [Vibrio harveyi ATCC BAA-1116]
          Length = 337

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 86/155 (55%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D LS L N  AF S L      N+ +++V  DID+FK  NDN+GH  GD VI  ++ +L 
Sbjct: 181 DGLSNLYNRRAFDSDLQMLIDSNQAMTLVMLDIDHFKAFNDNYGHLFGDTVIKAIARRLQ 240

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH-ITIS 221
                 +   R GGEEFA      S +     A+ LR++IE  ++ +  SG  +  IT S
Sbjct: 241 QSCRDGISAYRFGGEEFALIIPNKSLRIGRQYADTLRRMIEKLRVRDKRSGSQVQSITAS 300

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+AE    + + +++ +AD+ LY AK+ GRNRV+
Sbjct: 301 FGVAEYEVGDTLESLVNKADKQLYEAKQLGRNRVM 335


>gi|242278403|ref|YP_002990532.1| diguanylate cyclase with extracellular sensor [Desulfovibrio
           salexigens DSM 2638]
 gi|242121297|gb|ACS78993.1| diguanylate cyclase with extracellular sensor [Desulfovibrio
           salexigens DSM 2638]
          Length = 442

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 84/166 (50%), Gaps = 15/166 (9%)

Query: 100 ISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           + Q+S+ D L+GL N        H  F      YN  ++ +  DID FK IND +GH VG
Sbjct: 281 LRQMSQTDMLTGLYNRRKMDEIMHHEF-DRFKRYNTPITFILIDIDNFKTINDTYGHAVG 339

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+   ++ L+        +GR GGEEF      ++  E  I+A  LR+ I  ++    
Sbjct: 340 DNVLVRFAEILISNTRKTDRIGRWGGEEFIVVCPETTSGEGMIIAEKLRQRIAETRF--- 396

Query: 212 SGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             P+I + T S GI E   ++   ++  R D ALY +K+ GRN+V 
Sbjct: 397 --PTINNCTASFGITEINQQDDFMSLFARCDTALYSSKEQGRNKVT 440


>gi|222833111|gb|EEE71588.1| predicted protein [Populus trichocarpa]
          Length = 496

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 83/158 (52%), Gaps = 10/158 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLL  ++F+       E+L       +++  D+D+FK IND  GH  GD+V+  +S
Sbjct: 312 DALTGLLARTSFLERAQRTLERLQRERQSGAMLMLDLDHFKHINDRHGHAAGDRVLQEVS 371

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +L         +GRLGGEEFA    G+    A  +A  L +     +I+++ G +I  T
Sbjct: 372 ARLSQALRPHELIGRLGGEEFAVLLPGADCVTARAVAQRLCEATREIRIDMNDGAAICPT 431

Query: 220 ISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNR 254
           +S GI       P   +S ++  AD ALY AK SGR+R
Sbjct: 432 LSIGIGCTNMAYPPLGLSALLRMADTALYQAKASGRDR 469


>gi|218507747|ref|ZP_03505625.1| putative sensory box/GGDEF family protein [Rhizobium etli Brasil 5]
          Length = 146

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 2/127 (1%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++ FDID+FK +ND +GH  GD+VI   +++L           RLGGEEFA      + 
Sbjct: 3   AVIVFDIDHFKSVNDRYGHAAGDRVIMVFAEELQAHCSAGDTAARLGGEEFALVLKEMTP 62

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAK 248
             A ++A  +R+  E  +I+I  G  +  T+S G+A  R       T++  AD+ALY AK
Sbjct: 63  GRAELVAERIRRAFEAREIDI-DGQMLRCTVSVGVAPGRSQLPDFDTMLSAADKALYAAK 121

Query: 249 KSGRNRV 255
           + GRNRV
Sbjct: 122 RGGRNRV 128


>gi|160898917|ref|YP_001564499.1| diguanylate cyclase [Delftia acidovorans SPH-1]
 gi|160364501|gb|ABX36114.1| diguanylate cyclase [Delftia acidovorans SPH-1]
          Length = 496

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 83/158 (52%), Gaps = 10/158 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLL  ++F+       E+L       +++  D+D+FK IND  GH  GD+V+  +S
Sbjct: 312 DALTGLLARTSFLERAQRTLERLQRERQSGAMLMLDLDHFKHINDRHGHAAGDRVLQEVS 371

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +L         +GRLGGEEFA    G+    A  +A  L +     +I+++ G +I  T
Sbjct: 372 ARLSQALRPHELIGRLGGEEFAVLLPGADCVTARAVAQRLCEATREIRIDMNDGAAICPT 431

Query: 220 ISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNR 254
           +S GI       P   +S ++  AD ALY AK SGR+R
Sbjct: 432 LSIGIGCTNMAYPPLGLSALLRMADTALYQAKASGRDR 469


>gi|78777239|ref|YP_393554.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78497779|gb|ABB44319.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas denitrificans
           DSM 1251]
          Length = 791

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 93/169 (55%), Gaps = 13/169 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI + S  D L+GL N   F ++           N+ L ++  DIDYFKQ ND +GH  G
Sbjct: 617 RIEEYSITDALTGLYNRRFFDTNFNKEYKISKRDNKNLVLLIIDIDYFKQYNDYYGHQKG 676

Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-N 209
           D+++  +S  +  +F     +V RLGGEEF  +   + ++ A   A  LRK IE+ +I +
Sbjct: 677 DEILKLVSLSMKSLFKRANDYVYRLGGEEFGISFYTNDKESALKRAESLRKNIEHLKIEH 736

Query: 210 ISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            SS  S +++IS GI+   + C  E ++ I    D+ALY AK  GRNRV
Sbjct: 737 ASSEISGYLSISIGISFIPKECAME-VNEIYNITDKALYRAKNKGRNRV 784


>gi|254974720|ref|ZP_05271192.1| putative signaling protein [Clostridium difficile QCD-66c26]
 gi|255313846|ref|ZP_05355429.1| putative signaling protein [Clostridium difficile QCD-76w55]
 gi|255516527|ref|ZP_05384203.1| putative signaling protein [Clostridium difficile QCD-97b34]
 gi|260682791|ref|YP_003214076.1| putative signaling protein [Clostridium difficile CD196]
 gi|260686389|ref|YP_003217522.1| putative signaling protein [Clostridium difficile R20291]
 gi|260208954|emb|CBA61984.1| putative signaling protein [Clostridium difficile CD196]
 gi|260212405|emb|CBE03256.1| putative signaling protein [Clostridium difficile R20291]
          Length = 572

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 82/153 (53%), Gaps = 10/153 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ + N  +F      Y EK    ++V  DID FK INDN+GH  GD VI  +++ + 
Sbjct: 425 DGLTNVYNRKSFDIMYEKYREKDDNFALVMIDIDNFKLINDNYGHKFGDTVIKGITNTIC 484

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
           V+      V R GGEEF+      S +E A + +++R  I N + N      + +TISAG
Sbjct: 485 VMLEQDDKVFRYGGEEFSVLIRNKSGEEVADIIDNIRVAIANKKWN----DDVTVTISAG 540

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +A   H      ++  AD+ LY AK+ GRN+VV
Sbjct: 541 VA---HISDSKDVLEEADKNLYKAKQLGRNKVV 570


>gi|254456946|ref|ZP_05070374.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207085738|gb|EDZ63022.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 443

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 87/167 (52%), Gaps = 11/167 (6%)

Query: 101 SQLSRIDCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDK 153
             ++  D L+GL     F    +SS  S  ++   +S++  DIDYFK++ND +GH  GDK
Sbjct: 281 ENIASTDALTGLYTRHKFFQLYLSSYTSMVQRHNYMSLILVDIDYFKKVNDVYGHNAGDK 340

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  ++  L+ +      V R GGEEF      +  + A  +A  LR  IE   I++   
Sbjct: 341 TLVQVAHTLLKILRNVDVVCRWGGEEFLIMLPTADMEHAIFIAQKLRVSIEELSIDVVG- 399

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              ++T S G+++    E +   I RAD+ALY+AK SGRN V C  D
Sbjct: 400 ---NVTASFGVSQVREGEEMQDAIDRADKALYLAKDSGRNCVKCEMD 443


>gi|83311629|ref|YP_421893.1| GGDEF domain-containing protein [Magnetospirillum magneticum AMB-1]
 gi|82946470|dbj|BAE51334.1| FOG: GGDEF domain [Magnetospirillum magneticum AMB-1]
          Length = 386

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 115/240 (47%), Gaps = 27/240 (11%)

Query: 35  FSIFIATVIFIANIFLFYI-GLTPFYGLEYI---------LVENLSLVIISITISLLLGY 84
            ++ +A  ++ AN   F + GL+  + LE++         +V ++  + ++I+++L +  
Sbjct: 148 LAMRLAGWVYFANALFFLVRGLSIGFDLEFMAGKMSYGMTVVASMWWLCVTISVTLCMVL 207

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--------EKLSIVFFDI 136
           ++   L+      +   Q SR D L+G LN  AF +SLG             LS++  D+
Sbjct: 208 MASERLQA-----DLNEQASR-DPLTGALNRRAF-ASLGEREIVRARRTASPLSLLMIDM 260

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FKQIND  GH  GD+V+   +     +        R GGEEF A    SS  EA  +A
Sbjct: 261 DHFKQINDCLGHGGGDEVLVLFATLAGRILRAEDLFCRFGGEEFLALLPSSSLMEAMGVA 320

Query: 197 NDLRKII--ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             LR     E + ++        +T+S GIA     E +   I RAD ALY AK  GRNR
Sbjct: 321 ERLRAAFSAEGAGLDSEGKLPFPMTLSVGIAALAADEDMEAAIRRADAALYRAKDLGRNR 380


>gi|109898022|ref|YP_661277.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109700303|gb|ABG40223.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
          Length = 370

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 90/188 (47%), Gaps = 11/188 (5%)

Query: 76  ITISLLL---GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SY 125
           IT+SLL     Y      K L        + +R+D LSGL N    +  L         +
Sbjct: 178 ITVSLLFVFYEYSRQRSFKTLQELSREFEKQARLDPLSGLQNRRGMLEKLEYEHQRTLRH 237

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           ++ L+++  DID+FK++ND FGH VGD VI  +             V R GGEEF     
Sbjct: 238 HKNLTLMMCDIDHFKRVNDKFGHDVGDGVITQVGQLFDKALRKQDTVARWGGEEFLFLLP 297

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            +++++A  LA  LR  +   Q    S  S  +T+S GI +   ++ +   I RAD  LY
Sbjct: 298 ETTQEQAFTLAEKLRAQVSKQQYQAGS-DSFTVTVSLGIYQMHPQDNLDHAISRADTNLY 356

Query: 246 VAKKSGRN 253
            AK +GRN
Sbjct: 357 RAKSNGRN 364


>gi|289548504|ref|YP_003473492.1| diguanylate cyclase with PAS/PAC, CBS and GAF sensors [Thermocrinis
           albus DSM 14484]
 gi|289182121|gb|ADC89365.1| diguanylate cyclase with PAS/PAC, CBS and GAF sensors [Thermocrinis
           albus DSM 14484]
          Length = 822

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/133 (38%), Positives = 78/133 (58%), Gaps = 2/133 (1%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           Y++ LS++  D+D FK IND +GH VGD+ +   +  L  V      VGR GGEEF    
Sbjct: 690 YSKPLSVILADLDNFKTINDTYGHHVGDECLQTFAHVLNRVVRGSDVVGRYGGEEFILVL 749

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQA 243
             + ++ AA+LA  +R  + +S I  + G  +++T S G+A      E ++T+I  ADQ 
Sbjct: 750 PETDKEGAAMLAERIRLAVRSSSIRFTGG-CVYLTASFGVASFPEDGEDVTTLIRVADQR 808

Query: 244 LYVAKKSGRNRVV 256
           LY+AK  G++RVV
Sbjct: 809 LYIAKSQGKDRVV 821


>gi|227112497|ref|ZP_03826153.1| hypothetical protein PcarbP_06012 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 384

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 72/130 (55%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           N  LSI   DID+FK +ND +GH  GD ++  +++ L        +V R GGEEF    +
Sbjct: 249 NTSLSIAMIDIDHFKTVNDTYGHAAGDSILKRIAEVLYGSTRNSDYVFRYGGEEFMIVLI 308

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            + +  A  +   LRK I++  I + +G S+ +TISAGIA          +I  AD ALY
Sbjct: 309 ETPKVAAHTIIERLRKKIQDHPIYLQNGESVTMTISAGIAVYSGHPDYECLIKAADDALY 368

Query: 246 VAKKSGRNRV 255
            AK +GRNR+
Sbjct: 369 QAKANGRNRI 378


>gi|207722429|ref|YP_002252865.1| hypothetical protein ggdef [Ralstonia solanacearum MolK2]
 gi|206587608|emb|CAQ18190.1| hypothetical protein ggdef [Ralstonia solanacearum MolK2]
          Length = 467

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 8/176 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           L+EL  +++++  L+  D L+GL N   FI  + +        +   S++  D+D FK I
Sbjct: 291 LRELQAAHHKLEHLAATDPLTGLANRREFIGRVEAEIANANHVSAPFSVLALDLDRFKAI 350

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD V+   + + +        V R+GGEEF           A  +A  +R  
Sbjct: 351 NDTYGHQAGDHVLQRFAKKCLEAIRPHDGVARVGGEEFMVLLPKVPLNAAHAIAERIRTA 410

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           I  S   +  G ++ +T+S G++E       I  I+  AD+ LY AK  GRNRV+ 
Sbjct: 411 IAASPFELGPGRAVPLTVSIGVSEFGRDGSDIDAILRSADERLYRAKHEGRNRVIA 466


>gi|161899047|ref|YP_198017.2| response regulator PleD [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
          Length = 458

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 10/167 (5%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +++S  D L+   N   F + L +        N +LS++  DIDYFK +ND+FGH  GD+
Sbjct: 291 AEMSIKDPLTNCYNRRYFDTHLRNIIKDSVEKNRRLSLMILDIDYFKIVNDDFGHSAGDE 350

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  +  ++         + R GGEEF      ++  +A I+A  +R+II      +S  
Sbjct: 351 LLKQIQKRISENIRVTDLLARFGGEEFVVVMPDTNISDAYIVAERIREIIATEPFILSDK 410

Query: 214 PSIH-ITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
            + H +T+S G+ E      + I   I RAD+ LY AK SGRNRVV 
Sbjct: 411 NTTHNVTVSIGVVEMQESDLDNIEKFIVRADRYLYKAKNSGRNRVVT 457


>gi|331007208|ref|ZP_08330417.1| GGDEF domain-like protein [gamma proteobacterium IMCC1989]
 gi|330418975|gb|EGG93432.1| GGDEF domain-like protein [gamma proteobacterium IMCC1989]
          Length = 427

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 87/163 (53%), Gaps = 9/163 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++ L+  D L+ LLN   F       +S L   N++ ++V  DID+FK +ND +GHP G
Sbjct: 262 KLAILASRDPLTNLLNRRCFFERAEQELSRLKRNNKQAAVVIVDIDFFKVVNDKYGHPAG 321

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  +S  L         V R GGEEFA        ++A +LA  +RK I   Q+ I 
Sbjct: 322 DAVLTVISKILKNSVRQHDLVSRFGGEEFAIFLSDVDMEKAIMLAERMRKNIAEQQV-IY 380

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
            G  I  T S G++      + I+++I  AD+ LY AK+SGRN
Sbjct: 381 KGDIIKSTASFGLSMLTSDSQDINSVINDADKLLYEAKESGRN 423


>gi|253689587|ref|YP_003018777.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251756165|gb|ACT14241.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 532

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 87/170 (51%), Gaps = 15/170 (8%)

Query: 97  YNRISQLS---RIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPV 150
           + RI +LS     D L+GLLN      S+      + +++ +  DID+FK++ND +GH +
Sbjct: 356 HKRIGKLSLQAHTDPLTGLLNRRGIYESIELILPKSNQVAAIVIDIDHFKRVNDTYGHNI 415

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VI  L+  +         + R GGEEF A    +  ++A  +A  LRK +E   + I
Sbjct: 416 GDDVIRLLAKSIKQGSRESDLICRTGGEEFLALLPDTDMKQAVDIAERLRKKVEKMPLPI 475

Query: 211 SSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVC 257
                 +ITIS G+   C     E I  ++  AD ALY AK  GRNRVV 
Sbjct: 476 PE----NITISLGVT--CFIPGAEQIDNVLKIADDALYQAKHEGRNRVVT 519


>gi|254430045|ref|ZP_05043752.1| GGDEF domain protein [Alcanivorax sp. DG881]
 gi|196196214|gb|EDX91173.1| GGDEF domain protein [Alcanivorax sp. DG881]
          Length = 367

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 118/247 (47%), Gaps = 21/247 (8%)

Query: 27  FMIYFSIFFSIFIATVIFIANI---FLFYIGLTPFY---GLEYILVENLSLVIISITISL 80
            M+ F +   + IA V F+A+     + ++ L   +    L   L++ L   +IS++ ++
Sbjct: 119 LMVSFRLSGKVMIA-VAFLASAAYALMLWVALMDRWVQLSLSVELLQWLVFAMISVSFAV 177

Query: 81  LLGYIS------GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------- 127
             G ++          +EL  +  ++ +++  D L+GL N    +  L            
Sbjct: 178 TGGGVNRLRNALAEKNRELANAVEKVREMAIRDDLTGLFNRRHLLEILERQRALSDGKGV 237

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
             ++ + D+D+FK+IND  GH  GD+V+   S+  +       + GRLGGEEF      S
Sbjct: 238 PFAVCYVDLDHFKKINDRHGHDWGDRVLRQFSELALSGMRDGDYFGRLGGEEFLLVLPQS 297

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
               A ++A  LR+     + +   GP+  +++S G+A+    E +  ++ RADQ LY A
Sbjct: 298 DAHGALLVAERLRQRWREQRFDAQGGPAT-VSLSVGVADYRDGESVDELLNRADQGLYKA 356

Query: 248 KKSGRNR 254
           K  GR++
Sbjct: 357 KSGGRDQ 363


>gi|13474448|ref|NP_106016.1| hypothetical protein mlr5331 [Mesorhizobium loti MAFF303099]
 gi|14025201|dbj|BAB51802.1| mlr5331 [Mesorhizobium loti MAFF303099]
          Length = 381

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 15/183 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +E+ ++  +    +  D L+ L N  AF       ++  G+  E   ++F D+D FK++N
Sbjct: 187 REIEVAKQQSDHSANHDALTDLPNRRAFHNELKSVVARCGATGEAAGLLFIDLDRFKEVN 246

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA---AAALGSSEQEAAILANDLR 200
           D  GH  GD ++  +S QL  +  +  FV RLGG+EFA   +A    + Q+A  +A    
Sbjct: 247 DTLGHEAGDALLQRVSSQLRSILRSADFVARLGGDEFAFLFSADTELARQKAVRVAE--- 303

Query: 201 KIIENSQINI-SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+E  +I + +   +I +  + G+A          T+I  AD+ +YV KKSGRNR+V  
Sbjct: 304 RILERLRIKVPTPNGAIQVGCTVGVAMYPAEAADCDTLIALADRLMYVGKKSGRNRLVTA 363

Query: 259 SDI 261
           S++
Sbjct: 364 SEM 366


>gi|332872991|ref|ZP_08440952.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6014059]
 gi|332738835|gb|EGJ69701.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6014059]
          Length = 228

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 3/165 (1%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           I +LS+ID L+ +LN  +  + L + +E+    +++  DID+FK+IND +GH  GD+V+ 
Sbjct: 58  IQRLSQIDPLTNVLNRRSLNTHLEALHEQQFDYAVILLDIDHFKKINDIYGHHQGDQVLI 117

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++  L         +GR GGEEF      +   +A  +A   R+ ++   I  +    I
Sbjct: 118 EIAQCLSENLRNEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRQALQELTIFNNQNIQI 177

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           H++ S GI+          +I +ADQALY  K SGRN+V  F  +
Sbjct: 178 HVSASFGISSSAFANDPYLVIRQADQALYAVKASGRNQVRTFHQL 222


>gi|329888165|ref|ZP_08266763.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328846721|gb|EGF96283.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 784

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 96/179 (53%), Gaps = 16/179 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQIN 143
           L+       RI+ L+R D L+GL N ++F+  L       +  E L++   D+D FK++N
Sbjct: 340 LRARMAQERRIAHLARNDSLTGLPNRASFLERLTRQKQTAAEGESLALFALDLDRFKEVN 399

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGD+++  +++++        F+ R GG+EF A A  ++  EA  +A  LR+ +
Sbjct: 400 DLYGHAVGDQLLCIIAERMKGALREGEFIARQGGDEFLALASVATRDEARAVAERLRQAV 459

Query: 204 ENS----QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +      ++S G SI +++    A     + +ST+I  AD A+Y AK S   + VCF
Sbjct: 460 IQTVTLDHADVSCGASIGVSLWPEDA-----QDVSTLINNADLAMYRAKAS-LTQDVCF 512


>gi|209886197|ref|YP_002290054.1| cellulose synthesis regulatory protein [Oligotropha carboxidovorans
           OM5]
 gi|209874393|gb|ACI94189.1| cellulose synthesis regulatory protein [Oligotropha carboxidovorans
           OM5]
          Length = 397

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 102/194 (52%), Gaps = 4/194 (2%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
            EN++LV+ SIT    LG +S + L ++ I+ +   +    D L+GLLN  A        
Sbjct: 185 AENINLVM-SITSIGGLGALSLA-LNQVRITRHHQREAEH-DSLTGLLNRRALFDKSQRV 241

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              +++V FD+D+FK +ND  GH VGD V+   +  L           RLGGEEF     
Sbjct: 242 AAPVAVVVFDVDHFKAVNDRHGHQVGDTVLQTFASLLAANTREGDLAARLGGEEFVIVLS 301

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
           G+   +A  +A  +R+ +   +  ISS     +T+SAG+A    +  I  ++ RAD ALY
Sbjct: 302 GTMAAQAMQVAERVRESLAGQRF-ISSSGDFGVTVSAGVACENGEVDIIALLRRADFALY 360

Query: 246 VAKKSGRNRVVCFS 259
            AK +GRNRV+  S
Sbjct: 361 DAKHTGRNRVLLSS 374


>gi|90423626|ref|YP_531996.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
 gi|90105640|gb|ABD87677.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
          Length = 635

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 4/170 (2%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+++L+  D L+ L N  +    L    +  ++LS++  D+D+FK+ ND FGH  GD  +
Sbjct: 452 RLAELATTDGLTELANRRSMDDFLRLHFAAQDQLSLLLIDVDHFKRFNDRFGHQAGDACL 511

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L      P    R GGEEFA    G +E  A  +A  +R  I    I   +G +
Sbjct: 512 TRIAKVLAEAAPAPGLAARYGGEEFAIILPGVAEPHAIRIAEAVRLTIAALAIAHPNGAA 571

Query: 216 IHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDIENN 264
             +T+S GIA +         + R AD A+Y AK+ GRNR V  S + ++
Sbjct: 572 TTVTVSIGIASKTKATASEEDLVRAADLAMYAAKRGGRNRSVASSSLPDD 621


>gi|320159239|ref|YP_004191617.1| GGDEF domain-containing protein [Vibrio vulnificus MO6-24/O]
 gi|319934551|gb|ADV89414.1| GGDEF domain [Vibrio vulnificus MO6-24/O]
          Length = 333

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 85/162 (52%), Gaps = 5/162 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           N++S+L+ +D L+G  N  A      +L +      ++  DID+FK IND +GH  GD V
Sbjct: 173 NKLSKLATLDPLTGTNNRLALKHRYQALKTQGTAFFLLVLDIDHFKAINDEYGHDGGDCV 232

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  L   +  V G    V R GGEEF     G S Q A   A  +R+ I ++ I+   G 
Sbjct: 233 LRSLVKTMAHVVGEEN-VFRQGGEEFCILLAGVSHQHALKTAETIRQNIGDTPIHYREG- 290

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +I +T+S G+AE      +  I  +AD  LY AK  GRNRVV
Sbjct: 291 AISVTVSIGLAEAHASSCVDEINRQADANLYDAKSQGRNRVV 332


>gi|290508759|ref|ZP_06548130.1| diguanylate cyclase [Klebsiella sp. 1_1_55]
 gi|289778153|gb|EFD86150.1| diguanylate cyclase [Klebsiella sp. 1_1_55]
          Length = 560

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 106/200 (53%), Gaps = 11/200 (5%)

Query: 69  LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------S 120
           L+L+ +  T+ LLL ++    +++ + +    +   +  D L+ LLN  A         S
Sbjct: 358 LTLMWVLFTLMLLLSWLVIRRMVRNMSVLQTSLEWQAWHDALTRLLNRGALFEQAMAVAS 417

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           +       LS++  D+D+FK+IND +GH  GD+V++ ++  L         +GR+GGEEF
Sbjct: 418 ACQRSGRPLSVIQLDLDHFKRINDRYGHQAGDRVLSTVASTLASTVREGDLLGRVGGEEF 477

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                 ++ Q+A  +A  LR  I+  ++ + +  ++ ++ S G+  +E   +     +  
Sbjct: 478 CVVLPNTTLQDAVAVAERLRLRIQGREVFLHNNVTLRVSASLGVSTSEEQGEYQFEALQS 537

Query: 239 RADQALYVAKKSGRNRVVCF 258
            AD+ LY+AK++GRN+ VCF
Sbjct: 538 VADRRLYLAKQNGRNQ-VCF 556


>gi|170761628|ref|YP_001785670.1| GGDEF/HD domain-containing protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408617|gb|ACA57028.1| GGDEF/HD domain protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 567

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 89/172 (51%), Gaps = 9/172 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  L   D L+ + NH  F  +L          NE LS++F DIDYFK  ND +GH  G
Sbjct: 189 KLESLVNKDGLTDVYNHRFFHDALSKEVIECEEKNEALSMIFIDIDYFKHYNDLYGHQKG 248

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-I 210
           D+V+  + + L         V R GGEEFA     +SEQ+A  +A  +R+ IE +     
Sbjct: 249 DQVLKTMGEILKNNTRKEDIVARYGGEEFAVLLPNTSEQDAINIAEKIRRKIEYTYFEGE 308

Query: 211 SSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261
            + P+ ++T+S GI+   +K      +I  AD ALY AK   +NRV  ++ I
Sbjct: 309 ENQPNGNLTVSMGISVYPYKAKSDMELIKSADDALYRAKFFNKNRVEAYTSI 360


>gi|239994638|ref|ZP_04715162.1| GGDEF domain protein [Alteromonas macleodii ATCC 27126]
          Length = 994

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 8/165 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++QLS  D L+GL N   F     +       +N   S++  DID+FK+IND +GH VG
Sbjct: 830 KLTQLSTQDALTGLKNRRYFTQRAKAAWQNYKRHNHTFSLLIVDIDFFKRINDEYGHHVG 889

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++  L         + R GGEEF         QEA  +A  LRK + + +I+ +
Sbjct: 890 DTVLIKIARILEDNLRESDVIARWGGEEFLILLPSLKVQEAFWVAEKLRKTVADYEID-A 948

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              S+  TI+ G+A+    + +   I+  D+ LYV K+SGRN V+
Sbjct: 949 PPYSVSATITCGVADIRDYDSVEACIHAIDKKLYVGKESGRNAVI 993


>gi|239907124|ref|YP_002953865.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
 gi|239796990|dbj|BAH75979.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
          Length = 420

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 10/177 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL +S  ++  LS  D L+G+ N   F+ SL         ++   +++  DID FK IND
Sbjct: 242 ELKMSEEKLDILSSTDQLTGVYNRRKFMESLHGELQRSARFDVSNALLSIDIDNFKAIND 301

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GHPVGD+ + +++  L         +GR+GGEEF   A G  +++ A   N  R I+E
Sbjct: 302 TYGHPVGDQALIYVAHILKNSLRQVDVLGRVGGEEFGVVAPGVGKEDVAPFLN--RLIVE 359

Query: 205 -NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            N  +  +    I IT+S G         I  ++ +AD ALY +K  G+NR   + D
Sbjct: 360 FNENLFDTQKEKIKITVSIGCVVFGRNNNIEEVLSKADSALYDSKHKGKNRFSIWRD 416


>gi|110803451|ref|YP_698847.1| GGDEF/HD domain-containing protein [Clostridium perfringens SM101]
 gi|110683952|gb|ABG87322.1| GGDEF/HD domain protein [Clostridium perfringens SM101]
          Length = 564

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 9/161 (5%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ NH  F   L          NEKLS++F DIDYFK  ND +GH  GD+ +  + 
Sbjct: 197 DGLTGVYNHRYFYDKLREKMHISEVENEKLSLIFMDIDYFKHYNDLYGHQKGDEALKKIG 256

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHI 218
             L  +      V R GGEEFA     +SE+EA  +A  +R  +E +      + P+ + 
Sbjct: 257 KLLKNIARENDLVARYGGEEFAIILPNTSEEEATKIAERIRNKVEKTYFEGQENQPNANF 316

Query: 219 TISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCF 258
           T+S GIA    K      + + AD ALY AK   +NRV  +
Sbjct: 317 TVSVGIAAFPDKAKSELELVKCADDALYRAKFFHKNRVETY 357


>gi|58418760|gb|AAW70775.1| PleD-like response regulator containing 2 CheY-like receiver
           domains and a GGDEF domain [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 448

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 10/167 (5%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +++S  D L+   N   F + L +        N +LS++  DIDYFK +ND+FGH  GD+
Sbjct: 281 AEMSIKDPLTNCYNRRYFDTHLRNIIKDSVEKNRRLSLMILDIDYFKIVNDDFGHSAGDE 340

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  +  ++         + R GGEEF      ++  +A I+A  +R+II      +S  
Sbjct: 341 LLKQIQKRISENIRVTDLLARFGGEEFVVVMPDTNISDAYIVAERIREIIATEPFILSDK 400

Query: 214 PSIH-ITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
            + H +T+S G+ E      + I   I RAD+ LY AK SGRNRVV 
Sbjct: 401 NTTHNVTVSIGVVEMQESDLDNIEKFIVRADRYLYKAKNSGRNRVVT 447


>gi|313669502|ref|YP_004049928.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM
           16994]
 gi|313156699|gb|ADR35375.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM
           16994]
          Length = 648

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 17/169 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++  +++ D L+GL N   F       I+     +  LS+++ DID+FK+IND  GH V
Sbjct: 484 KKLEYVAQTDALTGLYNRLRFDDIVQREIAFGKRQDTPLSVIYMDIDFFKKINDTCGHDV 543

Query: 151 GD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           GD   K IAF+   ++     P    R GGEEF      ++ QE  +LA  LR+ I  + 
Sbjct: 544 GDIILKEIAFIIRDILRASDYPF---RWGGEEFIILCPSTTLQEIKVLAERLRERIAENN 600

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            ++ +     +T+S G+ +  + E +  +I RAD ALY AK++GRNR +
Sbjct: 601 FSVYT----KVTVSIGLTQYHNDESVDEMIKRADLALYQAKENGRNRSI 645


>gi|311107002|ref|YP_003979855.1| diguanylate cyclase [Achromobacter xylosoxidans A8]
 gi|310761691|gb|ADP17140.1| diguanylate cyclase, GGDEF domain protein 15 [Achromobacter
           xylosoxidans A8]
          Length = 531

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 24/222 (10%)

Query: 60  GLEYILVENLSLVIISITISLLLG---------YISGSILKELFI--------SYNRISQ 102
           GL Y +   LS +  ++T+    G         Y     L++              R++ 
Sbjct: 300 GLAYAIASPLSRLTRAMTVGKSAGVDIGRLNAWYAEADTLRDAVQLTLDQHQDEVGRLNT 359

Query: 103 LSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
            +  D ++GLLN  A    L +Y      ++++  D+D+FK+IND FGH  GDKV+  L+
Sbjct: 360 QALTDPMTGLLNRRAMTDVLDAYAADGTPVAVIAMDLDHFKRINDAFGHMTGDKVLIALA 419

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + +           R+GGEEF A     +  +A  +A  LR  +    +    G    +T
Sbjct: 420 EVIRAGLRDQDRAFRVGGEEFIALLPTGAASQAGEVAERLRAAVARRLMPDGVG---RVT 476

Query: 220 ISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +S GIA      +  S +I RAD+ALY +K++GRNRV  + D
Sbjct: 477 VSIGIALWPQDGDSASDVIQRADEALYESKQTGRNRVTLWHD 518


>gi|251772030|gb|EES52602.1| diguanylate cyclase [Leptospirillum ferrodiazotrophum]
          Length = 348

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 18/183 (9%)

Query: 91  KELFISYNRIS---QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           KE+ I  N +S   Q S ID L+G++N   F       + +  S   + S++F DID FK
Sbjct: 166 KEIEILKNELSAAAQASSIDPLTGVINRRGFEMRITECLKAQESRQGECSVLFIDIDNFK 225

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND+ GH VGD+++  ++  L         V R GGEEF      +   +A I+A ++R
Sbjct: 226 KINDDHGHSVGDRILLAVAQVLKGKTRGDDIVARFGGEEFVVVLPSTPIDKAHIVAENIR 285

Query: 201 KIIE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + +E     +++ N + G    +T+S GI      +     + RADQA+Y +KK G+NR 
Sbjct: 286 QNVERIALLSAKDNKTIGT---VTVSIGIDVHKSGQAWQKTVERADQAMYQSKKDGKNRT 342

Query: 256 VCF 258
             +
Sbjct: 343 TAY 345


>gi|224370431|ref|YP_002604595.1| ABC-type nitrate/sulfonate/bicarbonate transport system,
           periplasmic substrate binding component
           [Desulfobacterium autotrophicum HRM2]
 gi|223693148|gb|ACN16431.1| ABC-type nitrate/sulfonate/bicarbonate transport system,
           periplasmic substrate binding component
           [Desulfobacterium autotrophicum HRM2]
          Length = 404

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 86/174 (49%), Gaps = 11/174 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-SYNEKL------SIVFFDIDYFKQINDNFGHPVGD 152
           I  L + D L+GL N   F  +    +N  +      SIV  DIDYFK++ND FGH  GD
Sbjct: 200 IELLGQRDGLTGLYNRRYFDDAFEYEWNRAIRNRTAISIVMCDIDYFKRVNDAFGHLAGD 259

Query: 153 KVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
             +   +D L  VV      V R GGEEF       S +    LA  +R+++EN+ +   
Sbjct: 260 AYLRLTADVLKQVVRRETDIVARYGGEEFIFLIPDDSLENTVGLAERIRQMMENTALTF- 318

Query: 212 SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            G  I  T+S G+A    +  E   TI+  AD A+Y AK  GRNRVV    + +
Sbjct: 319 DGQIIRATVSLGVARLSPRPFEKKETIVSNADNAMYQAKSRGRNRVVAHGTVPD 372


>gi|171060216|ref|YP_001792565.1| PAS/PAC sensor-containing diguanylate cyclase [Leptothrix cholodnii
           SP-6]
 gi|170777661|gb|ACB35800.1| diguanylate cyclase with PAS/PAC sensor [Leptothrix cholodnii SP-6]
          Length = 438

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 81/162 (50%), Gaps = 9/162 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q +  D L+G+ N  +F  +              LS++ FD D+FK IND  GH  GD V
Sbjct: 272 QANDCDHLTGIANRRSFFEAAELELMRARQSPRPLSMILFDADHFKLINDRHGHHAGDAV 331

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  L+  L   F     V R+GGEEFA     +    A  +AN LR+ +E   + +  G 
Sbjct: 332 LRHLAALLTANFRQVDVVARVGGEEFAVLLPSTGLHGAVRVANRLRQAVEAQTVEV-DGV 390

Query: 215 SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
            IH T+S G+A        +  ++  ADQALY AK +GRNR+
Sbjct: 391 EIHCTVSGGVATMAAGLSGLDALMKCADQALYAAKAAGRNRI 432


>gi|111221728|ref|YP_712522.1| hypothetical protein FRAAL2297 [Frankia alni ACN14a]
 gi|111149260|emb|CAJ60946.1| hypothetical protein; putative membrane protein; putative GGDEF
           domain [Frankia alni ACN14a]
          Length = 451

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 72/138 (52%), Gaps = 1/138 (0%)

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           I         LS++  DID+FK++ND FGH +GD ++  ++D L         VGR GGE
Sbjct: 304 IGRAARAGRPLSVLLVDIDHFKRVNDRFGHLIGDVILLAVADTLRATARPRDLVGRFGGE 363

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTII 237
           EF      +  + A  +A  +R  +  ++      P + +T+S G+A +      +S +I
Sbjct: 364 EFVILLTEAGREHALDIAERIRSQVAGTRCRFDGCPPLSVTVSVGVATQDGSSGDLSALI 423

Query: 238 YRADQALYVAKKSGRNRV 255
            RAD ALY AK  GRNRV
Sbjct: 424 ARADTALYRAKADGRNRV 441


>gi|296133268|ref|YP_003640515.1| response regulator receiver modulated diguanylate cyclase
           [Thermincola sp. JR]
 gi|296031846|gb|ADG82614.1| response regulator receiver modulated diguanylate cyclase
           [Thermincola potens JR]
          Length = 301

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 83/169 (49%), Gaps = 15/169 (8%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +LS  D L+G  N   F       +  +  Y   L++   DID+FKQ+ND +GH VGD V
Sbjct: 131 ELSMRDELTGSYNRRYFNERLTEEVHRVKRYGRPLTVAMIDIDHFKQVNDTYGHQVGDFV 190

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  L + L         V R GGEEF           A  L   +R  +EN+    +  P
Sbjct: 191 LTKLVEFLQNNLRKSDLVARFGGEEFVVLLTEIDADSAERLMERIRSALENATFIYNREP 250

Query: 215 -----SIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
                S+ IT+S G+A  C K+      II  AD+ALY+AK +GRNR+V
Sbjct: 251 LFEKISVKITVSIGLAS-CPKDATDPERIISLADEALYIAKNTGRNRIV 298


>gi|313108017|ref|ZP_07794184.1| hypothetical protein PA39016_001210023 [Pseudomonas aeruginosa
           39016]
 gi|310880686|gb|EFQ39280.1| hypothetical protein PA39016_001210023 [Pseudomonas aeruginosa
           39016]
          Length = 523

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 8/161 (4%)

Query: 103 LSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N  +F+        +   +      +  DID+FK IND+ GH  GD+ +
Sbjct: 358 LASTDTLTGLHNRHSFLHQAELMLKAAERFRHPCVALMLDIDHFKNINDSHGHLTGDRAL 417

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +++ L         +GRLGGEEFAA     S  +A  +A  LR  +E  +++   G  
Sbjct: 418 QRVAETLRQGLREVDLLGRLGGEEFAALLPEVSLDQALDVAERLRAGVEALRVSNPDGEP 477

Query: 216 IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + +T+S G+A  R   + + +++ RAD ALY AK  GRNR 
Sbjct: 478 LRMTVSIGVALRRDAGDDLESLLVRADSALYQAKSGGRNRT 518


>gi|302671039|ref|YP_003830999.1| GGDEF domain-containing protein [Butyrivibrio proteoclasticus B316]
 gi|302395512|gb|ADL34417.1| GGDEF domain-containing protein [Butyrivibrio proteoclasticus B316]
          Length = 597

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 88/172 (51%), Gaps = 10/172 (5%)

Query: 88  SILKEL-FISYNRISQLSRIDCLSGLLNH-SAFISSLGSYNEKLSIVFFDIDYFKQINDN 145
           S+ KEL  I+Y    QL+RI     L N  +  +S       + SI+F DID+FK +ND 
Sbjct: 431 SMNKELGKIAY--TDQLTRIYNRWELENKVNEILSECNEGGNRASIIFMDIDHFKHVNDT 488

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE- 204
           +GH VGD V+    D +          GR GGEEF      +   EA   A +LRK I+ 
Sbjct: 489 YGHDVGDMVLRASVDIIRDNLEAQHVFGRWGGEEFIYVLPDTGIDEAVEFAENLRKQIQD 548

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           N  + +      HIT+S G+ +    + + T + RAD  LY AK+ GRNRVV
Sbjct: 549 NCFVTVQ-----HITMSFGVTQNIAGDTLETFVKRADDGLYKAKEGGRNRVV 595


>gi|312194408|ref|YP_004014469.1| diguanylate cyclase [Frankia sp. EuI1c]
 gi|311225744|gb|ADP78599.1| diguanylate cyclase [Frankia sp. EuI1c]
          Length = 549

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 9/168 (5%)

Query: 95  ISYNRISQ--LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
           + Y  +SQ  L+  D L+GL       + L             L+++  D+D+FK +ND 
Sbjct: 355 MRYAEVSQRRLANTDVLTGLCTRRFLETRLALASVRASQPGATLALLLIDVDHFKAVNDR 414

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGHP GD+ +A ++ +L  V  +   V R GGEEFA       + +  +L   LR  +  
Sbjct: 415 FGHPAGDRALAEVARRLREVARSADVVARYGGEEFALLTTYLGQDDLYVLGERLRLAVAA 474

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           S + +  G  + +T+S G A        + +I RAD+ALY AK +GR+
Sbjct: 475 SPVAVDDGIVLPVTVSVGAAATTLPASPAELIDRADRALYAAKSAGRD 522


>gi|237797953|ref|ZP_04586414.1| diguanylate cyclase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020804|gb|EGI00861.1| diguanylate cyclase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 692

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 85/165 (51%), Gaps = 16/165 (9%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q + ID L+GL N +A+       ++        L +   D+D+FK+IND +GH  GDKV
Sbjct: 530 QKALIDPLTGLANRAAWGERLELEMTQWQQAKNSLLVCILDLDHFKRINDGYGHLAGDKV 589

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQINI 210
           +  +++ L        F+ R GGEEF     A  +G+       L ++LR  +E    + 
Sbjct: 590 LKIVANVLKKRLRPNDFMARFGGEEFVMLLPATPIGT----GLTLLDELRTAVEECPFHF 645

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             G  + IT+S G+      E   T I RADQALY AK++GRNRV
Sbjct: 646 K-GERVTITVSLGVTALRQGERSDTAIKRADQALYKAKENGRNRV 689


>gi|90424331|ref|YP_532701.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
 gi|90106345|gb|ABD88382.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
          Length = 355

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 9/166 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F       +    +  + L+++  DID+FK  ND +GH  GD+V+  + 
Sbjct: 181 DPLTGLGNRKHFDRAVDDAVRCASASRQPLALLMIDIDHFKSFNDTYGHLTGDQVLRLVG 240

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--H 217
             L         + R GGEEFA     +  ++A  +A ++R+ + + ++   S   I   
Sbjct: 241 MSLKQSINGQDIMARYGGEEFAVVLPNTGLRQAIAVAENIRQTVTSKELKKKSTGEILGR 300

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +TIS G++     +   ++I RAD  LY AK++GRNRV+C  D ++
Sbjct: 301 VTISVGVSTLRADDDTDSLIERADSCLYAAKRNGRNRVICEIDRDD 346


>gi|327191230|gb|EGE58273.1| putative sensory box GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 540

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 88/164 (53%), Gaps = 10/164 (6%)

Query: 104 SRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           ++ D L+GL N        SA ++     +  +S+V FD+D+FK+IND  GH  GD V+ 
Sbjct: 352 AQTDLLTGLYNRRGFEVAASALLTQAEHGSRWISVVLFDLDHFKKINDLNGHDAGDAVLR 411

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++      F +   + R GGEEF A    S+  +AA++A  +R  IE ++I + SG  +
Sbjct: 412 HVAGVARENFRSFDLLVRHGGEEFLALLPDSTPDDAAVVAERVRLAIEMAEIALPSGERL 471

Query: 217 HITISAGIAERCHK---EPISTIIYRADQALYVAKKSGRNRVVC 257
            +T S G A R +         ++ RAD ALY AK SGRN VV 
Sbjct: 472 KVTASFGCAGRANDGASRNFEDLVKRADLALYAAKASGRNCVVS 515


>gi|288934559|ref|YP_003438618.1| diguanylate cyclase [Klebsiella variicola At-22]
 gi|288889268|gb|ADC57586.1| diguanylate cyclase [Klebsiella variicola At-22]
          Length = 559

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 106/200 (53%), Gaps = 11/200 (5%)

Query: 69  LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------S 120
           L+L+ +  T+ LLL ++    +++ + +    +   +  D L+ LLN  A         S
Sbjct: 357 LTLMWVLFTLMLLLSWLVIRRMVRNMSVLQTSLEWQAWHDALTRLLNRGALFEQAMAVAS 416

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           +       LS++  D+D+FK+IND +GH  GD+V++ ++  L         +GR+GGEEF
Sbjct: 417 ACQRSGRPLSVIQLDLDHFKRINDRYGHQAGDRVLSTVASTLASTVREGDLLGRVGGEEF 476

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                 ++ Q+A  +A  LR  I+  ++ + +  ++ ++ S G+  +E   +     +  
Sbjct: 477 CVVLPNTTLQDAVAVAERLRLRIQGREVFLHNNVTLRVSASLGVSTSEEQGEYQFEALQS 536

Query: 239 RADQALYVAKKSGRNRVVCF 258
            AD+ LY+AK++GRN+ VCF
Sbjct: 537 VADRRLYLAKQNGRNQ-VCF 555


>gi|212637691|ref|YP_002314216.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212559175|gb|ACJ31629.1| GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 485

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 87/165 (52%), Gaps = 8/165 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFIS----SLGSY---NEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  ++  D L+G  N  AF      SL      +  +S++  DID+FK +ND  GH +G
Sbjct: 319 KLELMASTDKLTGAANRQAFEEYFSRSLARSVLDSTPMSVLLVDIDHFKSVNDQHGHNIG 378

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D VI  +S+ L         + R GGEEF           A  +A  +RK +   +I++ 
Sbjct: 379 DLVIKTVSNMLKAELREQDLLCRWGGEEFLILLPNIDLSHACEIAELIRKSVAERRIHV- 437

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +G  I++TIS+G+AE    E    ++ RAD ALY AK+ GRNRVV
Sbjct: 438 NGCEINVTISSGVAEYRVTEKAEDVVNRADIALYQAKEQGRNRVV 482


>gi|158425346|ref|YP_001526638.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158332235|dbj|BAF89720.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 366

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 23/185 (12%)

Query: 93  LFISYNRISQL---------------SRIDCLSGLLNHSAF------ISSLGSYNEKLSI 131
           +F +YNR ++L               +R D L+GLLN  A       ++     +  L++
Sbjct: 179 MFHAYNRHAELALHNIEAANAALRDATRHDTLTGLLNLPALRDAAAGLAGGHGESAPLAL 238

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
            F D+D+FK IND FGH  GD V+  ++  +         V R+GGEEFA    G     
Sbjct: 239 AFIDVDHFKAINDRFGHAAGDSVLQTVAHAISGAARPQDLVARIGGEEFAIIMPGQDLAH 298

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKS 250
           A   A+ +R  +    + +    ++ +TIS G+ A +   + +  ++ RAD A+Y AK  
Sbjct: 299 ATAAADKVRLAVAERPVTVGK-ETLRVTISVGVTACQPPHQALDWMLQRADMAMYAAKAD 357

Query: 251 GRNRV 255
           GRNRV
Sbjct: 358 GRNRV 362


>gi|288555553|ref|YP_003427488.1| GGDEFmembrane protein diguanylate cyclase [Bacillus pseudofirmus
           OF4]
 gi|288546713|gb|ADC50596.1| GGDEFmembrane protein, putative diguanylate cyclase [Bacillus
           pseudofirmus OF4]
          Length = 514

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 114/238 (47%), Gaps = 24/238 (10%)

Query: 33  IFFSI-FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS---LLLGYISGS 88
           +F+SI F+     +A +F   I     Y L+ + ++   L   + T++   +   Y    
Sbjct: 281 MFYSIPFVLLTFLLARMFANRIA----YPLQQLAMQTFELKENNNTVNETKIPTWYFEAE 336

Query: 89  ILKELFISY--NRISQLSR------IDCLSGLLNHSAFISSLGSYNEKL--SIVFFDIDY 138
            L   F +Y  N+ SQL         D L+GL N  A I +L +  E++  SI+  DID+
Sbjct: 337 RLNHTFKAYIQNQESQLQSATKEALTDPLTGLANRRALIKTLQALQEQMHFSIILIDIDH 396

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND  GH  GD+ + F ++ +  +       GR GGEEF      +  Q+A  +A  
Sbjct: 397 FKTVNDTLGHKTGDETLVFFAEAMQRITREKDVCGRFGGEEFMIILPETGTQDAIDVAKR 456

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNR 254
           L+  ++++   IS    + IT SAGI   C  ++  I   +   D ALY AK  GRN+
Sbjct: 457 LKDFLQDT---ISPAGRV-ITFSAGIGFYCDSYEGEIDQFLNLVDAALYKAKDQGRNQ 510


>gi|225847975|ref|YP_002728138.1| ggdef domain protein [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644558|gb|ACN99608.1| ggdef domain protein [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 409

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 1/128 (0%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +SI+  DID+FK+IND +GH  GD+ +      +        ++ R GGEEF      ++
Sbjct: 282 ISIIIADIDFFKKINDTYGHLAGDEALKHFVKIIKQNLRKSDYIFRFGGEEFIILLPNTT 341

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
            +EA ++A  +R+ +E + + I +G  I IT S G+ E    EP+  II   D+ LY AK
Sbjct: 342 LEEAIVIAEKIRETLEKTPL-IYNGKEIKITASFGVKEVHPGEPVDRIIEDVDKKLYKAK 400

Query: 249 KSGRNRVV 256
           +SGRN+V+
Sbjct: 401 ESGRNKVI 408


>gi|330951794|gb|EGH52054.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 796

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 91/184 (49%), Gaps = 18/184 (9%)

Query: 87  GSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAFISSLGS-------YNEKLSI 131
           GS+L   F+S      R+ Q    LS  D L+G  N   F   + S       +   LS+
Sbjct: 611 GSVLWHGFVSDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQSELKRIDRHGGNLSV 670

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK+IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +
Sbjct: 671 IMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRGAQ 730

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A  LA  LR  +    I    G    +T S GIA     E +  ++ RAD  +Y AK++G
Sbjct: 731 AYQLALSLRDELRKQVIE---GVDQVVTGSFGIASWREGEGVDAMLLRADSGVYAAKQAG 787

Query: 252 RNRV 255
           R+RV
Sbjct: 788 RDRV 791


>gi|258404802|ref|YP_003197544.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692]
 gi|257797029|gb|ACV67966.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692]
          Length = 355

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 95/180 (52%), Gaps = 14/180 (7%)

Query: 93  LFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEK----LSIVFFDIDYFKQINDN 145
           L  +  RI++L R D L+G+ N      F+    + +E+    L +V  D+D FK +ND 
Sbjct: 166 LEAANTRINELLRTDPLTGVANRRHVEDFLGQAVARSERHGVPLCVVMCDLDRFKAVNDT 225

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH VGD+ +   +  L+    T   VGR GGEEF      ++ +    LA+ +R+ +  
Sbjct: 226 YGHAVGDQALQGFASVLLENCRTEDLVGRFGGEEFLLVLQDTTLEAGGCLADRMRQKVAT 285

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           + + ++ G  +  T S G+A     E   ++I RAD+A+Y AK  GR+RVV    +EN T
Sbjct: 286 A-VLVAEG--VQQTASFGVAAYRAGEGSESVIQRADKAMYAAKNKGRDRVV----LENET 338


>gi|118475025|ref|YP_892351.1| diguanylate cyclase [Campylobacter fetus subsp. fetus 82-40]
 gi|118414251|gb|ABK82671.1| diguanylate cyclase [Campylobacter fetus subsp. fetus 82-40]
          Length = 415

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 84/161 (52%), Gaps = 6/161 (3%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++L+  D LSG  +   F   +  Y     ++  ++  FDID FK+IND FGH +GD +
Sbjct: 253 MAKLANTDFLSGAYSRRYFYMDMKEYYKNCSDQSFAVAMFDIDDFKKINDKFGHDIGDII 312

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           I  LS  L+        V R GGEEF       +  +A   A  +R  I +S INI  G 
Sbjct: 313 IQKLSSFLIGWISEGDLVARFGGEEFCVVLKNINFDDAVKKAVSIRAKIASSLINI-KGF 371

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I  T+S G+      + I  II +AD+ALY AK +G+NRV
Sbjct: 372 DIKFTVSIGVTNGDFSKNIDHIISKADEALYNAKIAGKNRV 412


>gi|119946331|ref|YP_944011.1| diguanylate cyclase [Psychromonas ingrahamii 37]
 gi|119864935|gb|ABM04412.1| diguanylate cyclase [Psychromonas ingrahamii 37]
          Length = 794

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 74/127 (58%), Gaps = 1/127 (0%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS++  D+D+FK+IND +GH  GD ++ F+   +  +        R GGEEF      ++
Sbjct: 666 LSLLLIDVDHFKKINDTYGHLTGDNILKFIVKNIQAILRADDIFVRFGGEEFIILLPKAN 725

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
            +E+ ++A  LR  +E +  +  +G  I IT+S G ++  H E +  +I RAD ALY AK
Sbjct: 726 LEESVMVAEKLRLSVEQNNYH-KNGMDISITVSIGASQYQHTETLEKLISRADLALYSAK 784

Query: 249 KSGRNRV 255
           + GRN+V
Sbjct: 785 EKGRNQV 791


>gi|34495695|ref|NP_899910.1| hypothetical protein CV_0240 [Chromobacterium violaceum ATCC 12472]
 gi|34101550|gb|AAQ57919.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 375

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 90/171 (52%), Gaps = 19/171 (11%)

Query: 96  SYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
            +NR+   + +D L+G  N  A   ++ +L +  E++ +V  DID+FK +ND +GHP GD
Sbjct: 210 QHNRLEDAANLDPLTGAGNRRALQYWLRTLEASVERVCVVMLDIDHFKSVNDRYGHPAGD 269

Query: 153 KVIAFLSDQLVVVFG---TPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIEN 205
            V+  L+  +V+  G     M + R GGEEF      A +  + Q A  L    R++   
Sbjct: 270 AVLQALA--MVLRSGIRDNDMLI-RYGGEEFCLLMPDADIDDAVQAAERLLQAFRQLAP- 325

Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
               +   P +  T SAG  E  C ++  +    +ADQALY+AK+ GR+RV
Sbjct: 326 ----LPGHPELRCTFSAGAHEWDCRRQDFAEAQQKADQALYLAKQDGRDRV 372


>gi|110634093|ref|YP_674301.1| diguanylate cyclase [Mesorhizobium sp. BNC1]
 gi|110285077|gb|ABG63136.1| diguanylate cyclase [Chelativorans sp. BNC1]
          Length = 259

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 80/156 (51%), Gaps = 8/156 (5%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G  N   F  +L  Y       ++ + ++  D+D+FKQ+ND +GH +GD+V+  ++
Sbjct: 103 DSLTGTYNRRYFDDALAEYLLEFGRIHKPVGLIILDLDHFKQVNDAYGHDIGDEVLRRVA 162

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L  +      V RLGGEEFA  A    EQ  A L    R+ I    +N +    + I+
Sbjct: 163 RCLQELTRHDDVVARLGGEEFAILAPNMDEQGLAKLGERARQAISALAVN-AGNIRLRIS 221

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+A     E +     RAD+ LY AK+ GRNRV
Sbjct: 222 TSVGLAVWDGNESVEEFYRRADRMLYQAKRMGRNRV 257


>gi|158339038|ref|YP_001520215.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158309279|gb|ABW30896.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
          Length = 420

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 94/178 (52%), Gaps = 8/178 (4%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148
           S   + +L+ +D L+ + N   F   L    E+       +S++  D+D+FKQ+ND +GH
Sbjct: 241 SQTDLERLATLDGLTEVYNRREFNRWLSVEFERSRRDEHPVSLIMVDLDHFKQLNDTYGH 300

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+ +  ++  L         V R GGEEFA     SS +++  +A+ +R+ I    I
Sbjct: 301 QAGDEALCCVAQLLRKEVRPGDIVSRYGGEEFAIILPKSSVEDSVAVAHRIRREIAIQPI 360

Query: 209 NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            ISS   IH+T S G+A      +    ++ +ADQAL+ AKK GRNRV   +++  ++
Sbjct: 361 RISSEDRIHLTASLGLATFPSDVQSEEALLRKADQALFQAKKLGRNRVCLATEVSRSS 418


>gi|126643352|ref|YP_001086336.1| GGDEF domain-containing protein [Acinetobacter baumannii ATCC
           17978]
          Length = 360

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 95/183 (51%), Gaps = 8/183 (4%)

Query: 89  ILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFK 140
           IL E+ ++  R     I +LS+ID L+ +LN  +  + L + +E+    +++  DID+FK
Sbjct: 174 ILFEILLTQWRQRETYIQRLSQIDPLTNVLNRRSLNTHLEALHEQQFDYAVILLDIDHFK 233

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+V+  ++  L         +GR GGEEF      +   +A  +A   R
Sbjct: 234 KINDIYGHHQGDQVLIEIARCLSENLRNEDIIGRFGGEEFILLLPHTDIIQAEKIAERCR 293

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + ++   I  +    IH++ S GI+          +I +ADQALY  K SGRN+V  F  
Sbjct: 294 QALQELTIFNNQNIQIHVSASFGISSSAFANDPYLVIRQADQALYAVKASGRNQVRTFHQ 353

Query: 261 IEN 263
           +  
Sbjct: 354 LPQ 356


>gi|319787845|ref|YP_004147320.1| diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466357|gb|ADV28089.1| diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1]
          Length = 438

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 75/131 (57%), Gaps = 3/131 (2%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID+FK++ND+ GH  GD+V+  L+  L        ++ R GGEEF     G   
Sbjct: 309 ALLVLDIDHFKRVNDSCGHDTGDRVLHELAAVLRRQLRPGDWLVRWGGEEFVVLLPGVRT 368

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            + A +A DLR+ +E        G  + +T+S G+A R   E    +  RAD+ALY AK+
Sbjct: 369 DQVAGIAEDLRRAVERHPFE--HGVPVPVTVSLGVALRGPDEGFEALFKRADEALYEAKR 426

Query: 250 SGRNRVVCFSD 260
           +GRNRVV F+D
Sbjct: 427 AGRNRVV-FAD 436


>gi|303245323|ref|ZP_07331607.1| diguanylate cyclase with GAF sensor [Desulfovibrio fructosovorans
           JJ]
 gi|302493172|gb|EFL53034.1| diguanylate cyclase with GAF sensor [Desulfovibrio fructosovorans
           JJ]
          Length = 499

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 89/172 (51%), Gaps = 18/172 (10%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +N++   +  D L+ + N  AF   L         Y+  +S++  DID+FK IND FGH 
Sbjct: 312 FNQVKIRADHDGLTRIHNRRAFDERLVEELRRHQRYHHPMSLLMLDIDHFKSINDRFGHL 371

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD V+  +   L     +  F  R GGEEF      ++E+ + +LA  LR +I +++ N
Sbjct: 372 VGDHVLREVGRLLSDTLRSTDFTARYGGEEFTVILPQTAEEPSRVLAERLRGVIGDARFN 431

Query: 210 ISSGPSIHITISAGIAERC------HKEPISTIIYRADQALYVAKKSGRNRV 255
              G    ITIS G+A          KE    ++ +AD+ALY AKK GRN+V
Sbjct: 432 -HDGQEFSITISIGVATMVPGSLAKRKE----LLEKADKALYQAKKLGRNQV 478


>gi|228955663|ref|ZP_04117661.1| GGDEF domain protein [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|229193667|ref|ZP_04320610.1| GGDEF domain protein [Bacillus cereus ATCC 10876]
 gi|228589820|gb|EEK47696.1| GGDEF domain protein [Bacillus cereus ATCC 10876]
 gi|228804032|gb|EEM50653.1| GGDEF domain protein [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 352

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 103/208 (49%), Gaps = 18/208 (8%)

Query: 65  LVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHSAF 118
           L++ + +V + +  S++ GYI+      +L+  ELF    ++ Q + ID L+GL N   F
Sbjct: 150 LIKEIHIVGLYLISSIITGYITFISANYVLQSNELF---QKMKQYATIDALTGLGNVRQF 206

Query: 119 -------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  IS+    N+   ++  DID+FK +ND +GHP GD+V+  +   L      P  
Sbjct: 207 DLEMNRHISNKNMKNDSFCLLLIDIDHFKYVNDTYGHPAGDEVLKQVGCILRETSQFPDL 266

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
             R GGEEFA            +    +R  +E+    +     I IT+S G++E  ++E
Sbjct: 267 AFRKGGEEFALLIPNKGLAYGILTGEQIRTAVESHSFQLLDETKIKITVSVGVSE--YEE 324

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
                I  AD ALY +K++GRN+V   S
Sbjct: 325 SPEQFIQAADDALYYSKRNGRNKVSSVS 352


>gi|324113381|gb|EGC07356.1| EAL domain-containing protein [Escherichia fergusonii B253]
          Length = 720

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/176 (36%), Positives = 98/176 (55%), Gaps = 10/176 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGD 152
            +  +++RID LS L N  A I +L    ++      S+VF D+D FK IND +GH VGD
Sbjct: 294 QKARRIARIDWLSRLPNRRALIETLEDLRKRGECDLKSVVFIDLDGFKDINDIYGHYVGD 353

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS 211
           ++I  L+  L V+      + R+GG+EFA    G  SEQ A   A+ + K + N+ + + 
Sbjct: 354 QLIISLAQTLQVLTPKDGMLARMGGDEFALMIGGKKSEQIATEFADKVMKYL-NNPVQLG 412

Query: 212 SGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSDIENNTC 266
              SIHI+ S GIA     E  S+ ++ RAD A+Y AK +G+ R+  + D E N+ 
Sbjct: 413 E-RSIHISASIGIASGSLVECTSSELFRRADIAMYHAKATGKGRITHY-DAELNSA 466


>gi|78777526|ref|YP_393841.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78498066|gb|ABB44606.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
          Length = 564

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 87/169 (51%), Gaps = 10/169 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D ++ L N   F          S  EK  LSI+  DID FK +ND +GH  GD+V+
Sbjct: 397 LASTDSMTKLYNRRYFTEISAKVLHLSKREKNNLSILMIDIDRFKVVNDTYGHQFGDEVL 456

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             LS  LV        V R GGEEF      +S ++A  +A  +R ++E+  +   +   
Sbjct: 457 IALSRLLVEHQRKSDIVCRYGGEEFVILLPNTSLKDATNIAQKIRILVESLTMEAPTNKE 516

Query: 216 IHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              TIS G+A+    H++ I   + RAD ALY AK SGRNR VC  +I+
Sbjct: 517 FKFTISIGVAQIDVEHEDDIKFALKRADDALYRAKNSGRNR-VCAEEIK 564


>gi|28900594|ref|NP_800249.1| GGDEF domain-containing protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365474|ref|ZP_05778011.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
 gi|260877539|ref|ZP_05889894.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|260897520|ref|ZP_05906016.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           Peru-466]
 gi|28808974|dbj|BAC62082.1| putative GGDEF domain containing protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308087082|gb|EFO36777.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           Peru-466]
 gi|308090571|gb|EFO40266.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|308114277|gb|EFO51817.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
          Length = 456

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 10/148 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL-----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GLLN   F  S   +  +L     S++  D D  K+IND +GH VGD+VI  ++D 
Sbjct: 308 DDLTGLLNRRVFKDS--EFKRRLKTAPYSVIAIDGDRIKRINDRYGHHVGDEVIEIIADA 365

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +  VF T  ++ R GG+EF A   G S  ++++LA  LR  ++++++       I +++S
Sbjct: 366 MRKVFRTSDYLVRTGGDEFIAILPGCSISQSSMLAKKLRSFVKDNRLKT---LDIEVSVS 422

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKK 249
            G+A     E +  +I RAD+ LY  KK
Sbjct: 423 TGVAANESHESLQDVIVRADEDLYEMKK 450


>gi|332307994|ref|YP_004435845.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175323|gb|AEE24577.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 339

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 101/201 (50%), Gaps = 10/201 (4%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELF-----ISYNRISQLSRIDCLSGLLNHSAFIS 120
           +EN    +ISI I+ +L YI   ++   +      +  ++  L+  D L+   N  A   
Sbjct: 136 IENTD-AVISILINFVLAYIVIWVISHSYEMSRKSNEKKLVNLALRDALTQTYNRLALQE 194

Query: 121 SLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
               Y +K  +S+   DID FKQIND FGH VGD V+  LS  +    G    V R+GGE
Sbjct: 195 HFSQYLDKDDISVALLDIDDFKQINDRFGHDVGDCVLLQLSKLVRKTVGDDQ-VYRIGGE 253

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EF       +      +   LR  I+++Q   +   +I+ITIS G++E     P+S  + 
Sbjct: 254 EFVVLFKDCTMDSLVSIIESLRHTIQHTQFG-NDTLTINITISIGVSEVQDGTPLSQHLK 312

Query: 239 RADQALYVAKKSGRNRVVCFS 259
           +AD+ LY AK+ G+N+ V  S
Sbjct: 313 QADERLYCAKRKGKNQAVFIS 333


>gi|325497204|gb|EGC95063.1| Hypothetical protein; GGDEF diguanylate cyclase (GGDEF) domain,
           membrane protein [Escherichia fergusonii ECD227]
          Length = 720

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/176 (36%), Positives = 98/176 (55%), Gaps = 10/176 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGD 152
            +  +++RID LS L N  A I +L    ++      S+VF D+D FK IND +GH VGD
Sbjct: 294 QKARRIARIDWLSRLPNRRALIETLEDLRKRGECDLKSVVFIDLDGFKDINDIYGHYVGD 353

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS 211
           ++I  L+  L V+      + R+GG+EFA    G  SEQ A   A+ + K + N+ + + 
Sbjct: 354 QLIISLAQTLQVLTPKDGMLARMGGDEFALMIGGKKSEQIATEFADKVMKYL-NNPVQLG 412

Query: 212 SGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSDIENNTC 266
              SIHI+ S GIA     E  S+ ++ RAD A+Y AK +G+ R+  + D E N+ 
Sbjct: 413 E-RSIHISASIGIASGSLVECTSSELFRRADIAMYHAKATGKGRITHY-DAELNSA 466


>gi|304411474|ref|ZP_07393087.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           baltica OS183]
 gi|307306750|ref|ZP_07586492.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           baltica BA175]
 gi|304350001|gb|EFM14406.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           baltica OS183]
 gi|306910718|gb|EFN41147.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           baltica BA175]
          Length = 628

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 11/183 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL     ++++ S ID L+G+ N SAF   L             ++++  DID FK I
Sbjct: 441 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLIAESRISRRQETPIALLMLDIDRFKLI 500

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD+ +  ++  L      P   V R GGEEFA     ++E  A  +A  +R 
Sbjct: 501 NDRFGHLAGDEALRTIAQTLQQHLKRPTDLVSRYGGEEFAIILPNTAEDGALQVAETIRD 560

Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +       G  I +TIS G++     + +  + ++ +AD+ALY AK  GRN+V  FS
Sbjct: 561 AVSSLHFEW-GGEVIPLTISIGVSADIVTNDQHSTKLLEQADKALYQAKNGGRNQVSLFS 619

Query: 260 DIE 262
            ++
Sbjct: 620 SVQ 622


>gi|251788391|ref|YP_003003112.1| PAS/PAC sensor diguanylate cyclase [Dickeya zeae Ech1591]
 gi|247537012|gb|ACT05633.1| diguanylate cyclase with PAS/PAC sensor [Dickeya zeae Ech1591]
          Length = 463

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 91/182 (50%), Gaps = 13/182 (7%)

Query: 87  GSILK--ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           GS+L   EL  S   +  L++ D L+G+ N   F            S  + LS++  DID
Sbjct: 271 GSMLDVTELKQSETLLQVLAQTDSLTGIANRRHFDERYQHLWRQQESMQKPLSLLMIDID 330

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
            FK+ ND++GH  GD  I  + + L      +   +GR GGEEF      +  ++A ILA
Sbjct: 331 RFKRFNDSYGHSKGDACIKSVVETLAAQLPSSECLLGRYGGEEFIMVLPETDHRQALILA 390

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY---RADQALYVAKKSGRN 253
              R+ +E+ +I  +  P   +T+S G+A     E  S++      ADQALY AK  GRN
Sbjct: 391 ERCRQAVESMEIPHTKSPQGVVTVSIGVAAAKPGETGSSMTQLSNDADQALYRAKHQGRN 450

Query: 254 RV 255
           RV
Sbjct: 451 RV 452


>gi|324114607|gb|EGC08575.1| diguanylate cyclase domain-containing protein [Escherichia
           fergusonii B253]
          Length = 399

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 100/201 (49%), Gaps = 23/201 (11%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------ 122
           LSL +I +   L+  ++S     +L     R+  +S  D ++G+ N   + + L      
Sbjct: 204 LSLPVI-VFYPLIFAWVSYQTATKLAEHKRRLQVMSARDGMTGVYNRRHWETLLCIEFDH 262

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              Y    +++  DID+FK IND +GH VGD+ I  L+ QL +   +   +GR GG+EFA
Sbjct: 263 CRRYQRDATLLIIDIDHFKSINDTWGHDVGDEAILALTRQLQMTLRSSDVIGRFGGDEFA 322

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII--YR 239
               G+  + A    + + + +  S + +S  P + + IS G+A      P++  I  YR
Sbjct: 323 VIMCGTPAENAIAAMSRVHERL--SHLRLSCAPQVILRISVGVA------PLTPQISHYR 374

Query: 240 -----ADQALYVAKKSGRNRV 255
                AD ALY AK +GRNR 
Sbjct: 375 EWLKSADMALYKAKSAGRNRT 395


>gi|261251213|ref|ZP_05943787.1| GGDEF family protein [Vibrio orientalis CIP 102891]
 gi|260938086|gb|EEX94074.1| GGDEF family protein [Vibrio orientalis CIP 102891]
          Length = 411

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 21/174 (12%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +L+  D L+ +    A  S L     + +I   DID+FK  ND +GH  GD+V+  ++ +
Sbjct: 236 ELAFTDSLTEIPGRLALESDLKHLGRRYTIAMLDIDHFKSFNDTYGHDTGDEVLKLVASK 295

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP---- 214
           +++V G    V R GGEEF     G    EA      LR  IEN  +   N  + P    
Sbjct: 296 MLLVGGRAK-VYRYGGEEFTVLFKGKYADEAQDHLELLRTSIENYDMVLRNQDARPKDDK 354

Query: 215 -------------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                        ++++TIS G+A+      ++ ++  AD ALY AKK+GRNRV
Sbjct: 355 QGCKKRGVKKASDTVNVTISIGVADSSETSKVAEVMKSADNALYKAKKAGRNRV 408


>gi|254520962|ref|ZP_05133017.1| ggdef domain protein [Stenotrophomonas sp. SKA14]
 gi|219718553|gb|EED37078.1| ggdef domain protein [Stenotrophomonas sp. SKA14]
          Length = 400

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 90/162 (55%), Gaps = 9/162 (5%)

Query: 104 SRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GLLN SA ++        +      L+++  D+D+FKQIND +GH  GD+V+ 
Sbjct: 222 ARTDGLTGLLNRSAVLADGQAQLQRVRQQGHPLALLLVDVDHFKQINDRWGHLAGDEVLR 281

Query: 157 FLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             S  L     G    +GR GGEEF     GS+  +A +LA  +R  ++     + +GP 
Sbjct: 282 HFSAVLQHCTQGKTHLLGRYGGEEFVLVLAGSTSSDAVMLAAVIRTRLQRHPAVLVTGP- 340

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +T S G+A    +  +ST++  AD ALY AK +GR+++ C
Sbjct: 341 VAVTASVGLAMDEGQGDLSTLLAAADAALYQAKAAGRDQLAC 382


>gi|313683101|ref|YP_004060839.1| response regulator receiver modulated diguanylate cyclase
           [Sulfuricurvum kujiense DSM 16994]
 gi|313155961|gb|ADR34639.1| response regulator receiver modulated diguanylate cyclase
           [Sulfuricurvum kujiense DSM 16994]
          Length = 412

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 85/164 (51%), Gaps = 8/164 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I+  +  D L+GL N   F +++  Y        E+  +   DID+FK+IND +GH VGD
Sbjct: 249 ITNYASRDFLTGLYNRRYFFNTIEPYFSNAVDSEEEFVVAMVDIDHFKKINDTYGHDVGD 308

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           K I  LS+ L         V R GGEEF      ++ + A  +   +R+ +  S + I++
Sbjct: 309 KAIIHLSEILRSGVQHQDVVARFGGEEFCIVLKNTTRENAIGVLERIRQQVSLSPLMIAN 368

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              +  TIS G A   H++ ++  I  AD  LY AK +GRN+VV
Sbjct: 369 QSEVSFTISIGAALE-HEDTLTDTINEADAKLYQAKSTGRNKVV 411


>gi|148656630|ref|YP_001276835.1| diguanylate cyclase [Roseiflexus sp. RS-1]
 gi|148568740|gb|ABQ90885.1| diguanylate cyclase [Roseiflexus sp. RS-1]
          Length = 387

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 93/183 (50%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           S ++ L   Y  ++ L+  D L+ L N           I+    Y ++  +  FD+D+FK
Sbjct: 205 SHIERLHTEYEVMANLAYTDTLTSLPNRRRLYEDVYRLIALAERYGQEFCVCLFDLDHFK 264

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND  GH VGD+V+  ++    +        GR GGEEF      +         ND +
Sbjct: 265 RLNDTHGHLVGDQVLQEVAQVARLHLRAADLFGRWGGEEFVVLLPQTR-------LNDAQ 317

Query: 201 KIIENSQINISS--GPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +E  ++ + +   P++H IT S GIA     +   ++++RADQALY+AK +GRNR+V 
Sbjct: 318 TALERVRLALHTIALPNVHAITASFGIAAYLPGDTSESLLHRADQALYLAKATGRNRIVL 377

Query: 258 FSD 260
            SD
Sbjct: 378 DSD 380


>gi|330501719|ref|YP_004378588.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas mendocina NK-01]
 gi|328916005|gb|AEB56836.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas mendocina NK-01]
          Length = 537

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 84/161 (52%), Gaps = 10/161 (6%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +  L           + L+    DID+FK++ND +GHP+GD+VI  L+
Sbjct: 377 DSLTGLYNHTHTLQLLDDACYRARREQQPLAFAMLDIDHFKKVNDTYGHPMGDRVIKSLA 436

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L         +GR GGEEFA     + EQ A  +  ++R+    ++I+  + P  +  
Sbjct: 437 LFLKQRLRKTDHIGRYGGEEFAVVLPDTDEQSALKVLEEIRQRF--AEIHYPAQPQDLSC 494

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           T S GIA        + +  RAD+ALY AK  GRNRV  +S
Sbjct: 495 TFSCGIAMLQPGLDGNALSKRADEALYKAKHGGRNRVELYS 535


>gi|310644541|ref|YP_003949300.1| diguanylate cyclase (ggdef) domain protein [Paenibacillus polymyxa
           SC2]
 gi|309249492|gb|ADO59059.1| Diguanylate cyclase (GGDEF) domain protein [Paenibacillus polymyxa
           SC2]
          Length = 358

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 102/198 (51%), Gaps = 11/198 (5%)

Query: 68  NLSLVIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ 118
           NL  +I+  T+ +L G   Y   S +K+   + + + + +  D L+GL +  AF      
Sbjct: 157 NLETIIMITTVKILGGLFTYFMMSHIKKTERAIHLLEEAANRDHLTGLYSPRAFDALFEE 216

Query: 119 -ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
            + +  +  +   +V  DID+FK+IND +GH  GD V++ L   L     T  +  R GG
Sbjct: 217 VLHASKTTKKPFGLVMLDIDHFKKINDTYGHLNGDAVLSQLGILLNRESTTRAYPSRKGG 276

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EEFA        ++AA  A  +RK +EN    ++ G  I +T+S G A          ++
Sbjct: 277 EEFAILLGDCDTEKAASFAEKIRKAVENECFLLNDGTIISLTVSIG-AGSSPAIVSRRLL 335

Query: 238 YRADQALYVAKKSGRNRV 255
            +AD+ALY AK+SGRNRV
Sbjct: 336 EKADEALYEAKRSGRNRV 353


>gi|126651261|ref|ZP_01723471.1| response regulator receiver domain protein (CheY-like) [Bacillus
           sp. B14905]
 gi|126592099|gb|EAZ86165.1| response regulator receiver domain protein (CheY-like) [Bacillus
           sp. B14905]
          Length = 578

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 118/257 (45%), Gaps = 40/257 (15%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG------ 83
           Y+ I +++ ++++I  A   L ++ + PF+   +  V  +  +  SI +SL LG      
Sbjct: 313 YYIIGWTVLLSSIIVQA---LAFLSIIPFHPRVFEEVPAIGAIFESIFLSLALGDKINII 369

Query: 84  ----------------YISGSILKELFISYNRISQLSRIDCLSGLLNH--------SAFI 119
                           Y      KEL  +   +  L+  D L+ + N           F 
Sbjct: 370 KKEHQLMQETLNETLEYKVQERTKELEAAKLELEALANTDRLTQIPNRVRLDDVLEKEFK 429

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
            + G+    LSI+  DID+FK +ND FGH VGD V+   +D L         VGR GGEE
Sbjct: 430 QATGN-GTPLSIILLDIDHFKAVNDEFGHQVGDLVLRHAADMLKNHVRVEDIVGRWGGEE 488

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA-GIAERCHKEPISTIIY 238
           F      +  ++A  L+ +LR+     Q+   S P +H   S+ G+      + I +++ 
Sbjct: 489 FLVVCPNTRLKDAVQLSENLRQ-----QLEQHSFPVVHQKTSSFGVTSFVLGDTIHSLLS 543

Query: 239 RADQALYVAKKSGRNRV 255
           R D+ALY AK+ GRNRV
Sbjct: 544 RCDKALYQAKEYGRNRV 560


>gi|293605900|ref|ZP_06688270.1| response regulator [Achromobacter piechaudii ATCC 43553]
 gi|292815687|gb|EFF74798.1| response regulator [Achromobacter piechaudii ATCC 43553]
          Length = 341

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 89/177 (50%), Gaps = 11/177 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           ++L  S   + +L+  D L+GL N   F   L +          ++S++  D+D+FK  N
Sbjct: 157 QQLLESNMELRRLTNSDGLTGLGNRRYFDEYLNAEWQRARRDQREISMLMIDVDHFKAYN 216

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+ +  +++ +            R GGEEFA    GS    A + A  LR+ 
Sbjct: 217 DTYGHIAGDEALKRVANTIFASCDRSTDLAARFGGEEFALVLPGSPAGSARLAAEKLRRA 276

Query: 203 IENSQI---NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +E  QI   +  SGP + ++I    A     +P + +I  AD+ LY AK++GRNRVV
Sbjct: 277 VEAMQIPQKDTGSGPWLTVSIGTATAIPVPDQPCTDLIQVADRGLYQAKRNGRNRVV 333


>gi|157963523|ref|YP_001503557.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157848523|gb|ABV89022.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
          Length = 320

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 101/216 (46%), Gaps = 23/216 (10%)

Query: 57  PFYGLEYILVENLSLVIIS------ITISLLLGYISGSILKELFI--SYNRISQLSRIDC 108
           P  G    + +N++L+ +S        IS+++  ++   + +L +  +  R   LS+ID 
Sbjct: 103 PITGRADFMYQNVTLLPLSSLTGEVTHISMIVYDVTDVAINKLQLKSANERFEHLSQIDG 162

Query: 109 LSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ L N   +   L         Y    S+V  DID+FK IND +GH  GDKV+  +S  
Sbjct: 163 LTQLFNRRHWEQCLQKEFDRHARYGSDTSLVMLDIDHFKSINDTYGHQAGDKVLQNVSHL 222

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +          GR GGEEF      +    A   A  LRK +E  +I       I IT+S
Sbjct: 223 IKKSLRETDCAGRYGGEEFGVVLANTPAANARFFAERLRKKLEQLEICYEEH-IIKITVS 281

Query: 222 AGIAERCHKEP----ISTIIYRADQALYVAKKSGRN 253
            GI   C  +P      T +  ADQALY AK++GRN
Sbjct: 282 LGI---CEIKPEIMDSDTWLSLADQALYQAKEAGRN 314


>gi|219848730|ref|YP_002463163.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus aggregans DSM 9485]
 gi|219542989|gb|ACL24727.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus aggregans DSM 9485]
          Length = 941

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NHS         ++      + LS+V  DID+FKQ+ND  GH +GD+V+  L+
Sbjct: 383 DGLTGLFNHSVSQDLLTREVARARRNGQPLSVVLIDIDHFKQVNDRHGHQMGDRVLKSLA 442

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L     T   +GR GGEEF      +    AA++ + LR+   + + +   G  + +T
Sbjct: 443 RLLRQRLRTTDVIGRYGGEEFLVVMPDTRAASAAMVIDSLRERFAHIE-HQREGEPLRVT 501

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            SAG+AE        +++ +AD ALY AK  GRN VV
Sbjct: 502 FSAGVAEWSLGMDTGSLLEKADAALYQAKNQGRNLVV 538


>gi|88797784|ref|ZP_01113372.1| hypothetical protein MED297_11550 [Reinekea sp. MED297]
 gi|88779461|gb|EAR10648.1| hypothetical protein MED297_11550 [Reinekea sp. MED297]
          Length = 354

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 87/157 (55%), Gaps = 11/157 (7%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N    +  L           E L +V+ DID+FK+IND +GH +GD+V+  ++
Sbjct: 190 DALTGVWNRKGILHILEQKLNVSERTGETLGVVYADIDHFKRINDTYGHAIGDEVLVQVA 249

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           D++ ++      +GR+GGEEF    L  +   A  +A  +R+ IE   +   +G  + ++
Sbjct: 250 DRIRLMLRNYDALGRIGGEEFLVLVLDPAPNAAQRIAERIRQAIEQRPVATRAG-DLMVS 308

Query: 220 ISAGIAERCHKEPIST---IIYRADQALYVAKKSGRN 253
           +S G+A R  ++  +T   ++  AD+ LY AK +GRN
Sbjct: 309 MSLGVAVRHDEQQQATSTALMAEADRCLYQAKNAGRN 345


>gi|77458276|ref|YP_347781.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1]
 gi|77382279|gb|ABA73792.1| putative transmembrane sensory box GGDEF domain protein
           [Pseudomonas fluorescens Pf0-1]
          Length = 357

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 91/191 (47%), Gaps = 12/191 (6%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SI 131
            L LG+I       L +    +  LSR D L+GLLNH A+   L    E+        +I
Sbjct: 159 PLALGWICFRQAYTLGLHKRELLALSRTDSLTGLLNHGAWKDQLEIEFERCKRQQTGAAI 218

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              DID+FK IND +GH  GD V+  LS  L          GR GG+EF           
Sbjct: 219 ALIDIDHFKAINDTYGHVAGDIVLRQLSKMLKQNLRMADVAGRYGGDEFCVILPDLPLFN 278

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKK 249
           AA     LR+    S +     P++ +++S G+A  +  H +  +  +  ADQALY AK 
Sbjct: 279 AAQAMEALRERF--SFLVYEQNPALKVSLSIGLAALDPAHGD-ATRWLDDADQALYEAKA 335

Query: 250 SGRNRVVCFSD 260
            GRNRV+C SD
Sbjct: 336 GGRNRVICCSD 346


>gi|113971105|ref|YP_734898.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113885789|gb|ABI39841.1| diguanylate cyclase [Shewanella sp. MR-4]
          Length = 575

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 11/175 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           +   R  +++R+D L+G+LN  A        F+ +     +   ++ FD+DYFK+IND++
Sbjct: 385 LQKRRFMRMARMDALTGVLNRGAGQDLGENLFVQAAARGGD-FCVILFDLDYFKRINDSY 443

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD  +  + + L           R+GGEEFA     ++E +   +A   R  IE  
Sbjct: 444 GHGTGDWALKKVVEALKPHVRNGDVFARIGGEEFALFLPYANESKGMEVAEQCRSRIEAI 503

Query: 207 QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
             ++ SG    IT S G++    ++  +  +++RAD ALY AK +GRN V C+ D
Sbjct: 504 DTHL-SGHKFTITASFGVSGMTKEDLSLDPLLHRADMALYAAKSNGRNSVFCYED 557


>gi|148556451|ref|YP_001264033.1| diguanylate cyclase [Sphingomonas wittichii RW1]
 gi|148501641|gb|ABQ69895.1| diguanylate cyclase [Sphingomonas wittichii RW1]
          Length = 408

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 85/170 (50%), Gaps = 15/170 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  ++  D L+GL N   F+        +  S     S+   D+D FK IND +GH  
Sbjct: 225 TRLRIMADTDELTGLANRRCFLERARTAFGTARSRERPFSLCMIDVDNFKAINDGWGHDC 284

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  ++   +  F     VGR GGEEF AA  G+   +A  +A  LR+ I   ++  
Sbjct: 285 GDAVLREVAAACLRTFREGDAVGRFGGEEFVAALPGADMADARRIAERLRETIAGLRLEA 344

Query: 211 SSGPSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNRVV 256
                + +T++ G+AE    EP+ T     + RAD ALY  K+SGRN V+
Sbjct: 345 PLA-DLRVTVTIGLAE---VEPLETSLAPALKRADAALYQGKRSGRNMVL 390


>gi|218548797|ref|YP_002382588.1| hypothetical protein EFER_1436 [Escherichia fergusonii ATCC 35469]
 gi|218356338|emb|CAQ88956.1| Hypothetical protein; putative GGDEF diguanylate cyclase (GGDEF)
           domain, putative exported membrane protein [Escherichia
           fergusonii ATCC 35469]
          Length = 722

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/176 (36%), Positives = 98/176 (55%), Gaps = 10/176 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGD 152
            +  +++RID LS L N  A I +L    ++      S+VF D+D FK IND +GH VGD
Sbjct: 296 QKARRIARIDWLSRLPNRRALIETLEDLRKRGECDLKSVVFIDLDGFKDINDIYGHYVGD 355

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS 211
           ++I  L+  L V+      + R+GG+EFA    G  SEQ A   A+ + K + N+ + + 
Sbjct: 356 QLIISLAQTLQVLTPKDGMLARMGGDEFALMIGGKKSEQIATEFADKVMKYL-NNPVQLG 414

Query: 212 SGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSDIENNTC 266
              SIHI+ S GIA     E  S+ ++ RAD A+Y AK +G+ R+  + D E N+ 
Sbjct: 415 E-RSIHISASIGIASGSLVECTSSELFRRADIAMYHAKATGKGRITHY-DAELNSA 468


>gi|264678470|ref|YP_003278377.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262208983|gb|ACY33081.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 184

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 86/162 (53%), Gaps = 8/162 (4%)

Query: 105 RIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           + D L+ L N     A +  L + +   S+V  DID+FK++ND FGH  GD V+  L+ Q
Sbjct: 20  KTDPLTKLGNRRSLEAALQKLEASSHIFSVVSIDIDHFKKVNDTFGHDAGDIVLRDLAKQ 79

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +  V        R+GGEEF      +SE  A  +A  LRK +E +   +  G   HITIS
Sbjct: 80  MKSVSRADDLPCRVGGEEFLIVLPRTSETTAVQVAERLRKQVEAA---VFEGVG-HITIS 135

Query: 222 AGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            G+A   +    I T+I  AD+ LY AK+ GRNRV  +S  E
Sbjct: 136 LGVASWPNSSSDIPTVIKYADEMLYKAKREGRNRVAVYSQSE 177


>gi|221210903|ref|ZP_03583883.1| diguanylate cyclase [Burkholderia multivorans CGD1]
 gi|221169859|gb|EEE02326.1| diguanylate cyclase [Burkholderia multivorans CGD1]
          Length = 508

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 85/170 (50%), Gaps = 9/170 (5%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFG 147
           ++  ++ +L+R D L+GL N  AF ++L     +       LS++F D+D+FK  ND +G
Sbjct: 329 VAEAKLYRLARTDSLTGLDNRGAFDAALAQEARRAARSGRPLSVLFVDVDHFKAFNDYYG 388

Query: 148 HPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  GD V+  ++             + R GGEEF      +  Q AA +A  +R+ I   
Sbjct: 389 HLAGDDVLRRVAQCASGCLRRATDHIARYGGEEFVVTLPDTDAQGAATVAEGIRRAIAAL 448

Query: 207 QINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
            I     P  H+T S G A   H +   +T++  AD ALY AK  GRNRV
Sbjct: 449 GIEHVKSPYGHVTASIGTATDAHGRMDAATLLQLADDALYRAKYGGRNRV 498


>gi|110835527|ref|YP_694386.1| GAF/PAS/GGDEF domain-containing protein [Alcanivorax borkumensis
           SK2]
 gi|110648638|emb|CAL18114.1| GAF/PAS/GGDEF domain protein [Alcanivorax borkumensis SK2]
          Length = 487

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 22/197 (11%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------- 124
           +   +T  L L    G  L+EL      ++ ++R D L+GL N    +  L         
Sbjct: 295 ITAQVTAELTLREKQGE-LEEL---NQELASMARTDPLTGLYNRLVLMEGLRQEFSRCER 350

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
            +E +S++F D+D+FKQ ND++GH  GD  +  +++ L  V      + R GGEEF A  
Sbjct: 351 RSEPMSVIFMDVDHFKQYNDSYGHVEGDAALQAVAEALRPVIRDTDVLARYGGEEFVALL 410

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIY 238
             ++ Q+A  +A   R+ +  ++I+  S P   +++S G+A      E    +   +++ 
Sbjct: 411 PTANSQDAERVAERCRRAV--AEISSLSRP---VSLSVGVATLRFGDEADETKSPESLLS 465

Query: 239 RADQALYVAKKSGRNRV 255
            AD+ALYVAK +GRNRV
Sbjct: 466 AADRALYVAKGAGRNRV 482


>gi|313682761|ref|YP_004060499.1| response regulator receiver modulated diguanylate cyclase
           [Sulfuricurvum kujiense DSM 16994]
 gi|313155621|gb|ADR34299.1| response regulator receiver modulated diguanylate cyclase
           [Sulfuricurvum kujiense DSM 16994]
          Length = 428

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 90/185 (48%), Gaps = 13/185 (7%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFF 134
           +GY S   + +      R+ ++S  D L+ L N     SS          Y+   +++  
Sbjct: 249 IGYTS---ISQNITDKKRVEEISVTDQLTQLHNRMYLESSFAKEIKRAKRYHHLFAVIMI 305

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK++ND +GH VGD V+  +S  L         +GR GGEEF      +S  EA  
Sbjct: 306 DIDHFKEVNDTYGHDVGDNVLVSISQILSENIRETDILGRWGGEEFLIICPHTSSLEAYN 365

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           LA  LR  IE   I++    S    +S       + E    ++  +D+ALYVAKKSGRNR
Sbjct: 366 LAEKLRVSIETHPIDVIGYKSCSFGVSVF---DLNDETFKEVLKHSDEALYVAKKSGRNR 422

Query: 255 VVCFS 259
           VV + 
Sbjct: 423 VVEYK 427


>gi|303239391|ref|ZP_07325919.1| diguanylate cyclase with TPR repeats [Acetivibrio cellulolyticus CD2]
 gi|302593177|gb|EFL62897.1| diguanylate cyclase with TPR repeats [Acetivibrio cellulolyticus CD2]
          Length = 1820

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 90/165 (54%), Gaps = 11/165 (6%)

Query: 103  LSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVI 155
            +S ID L+G+     F S +      +++EK  LS++  DID FK INDNFGH  GD+++
Sbjct: 1476 ISSIDKLTGVYTRKYFESVIDQIINNAHSEKSPLSLIMIDIDKFKSINDNFGHQKGDEIL 1535

Query: 156  AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
            + +   L+    +     R GGEEF      +S  EA  +A  LR  IE  ++    G  
Sbjct: 1536 SNVGRILMENIRSADVCCRYGGEEFVIILPDTSINEAEAVAEKLRSAIEKERL---MGQG 1592

Query: 216  IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++T+S G++    H E    +I +ADQALY AK+SGRNR   ++
Sbjct: 1593 NNLTVSLGVSSYPKHGEWRDELIGKADQALYYAKESGRNRSCVWN 1637


>gi|159184564|ref|NP_354013.2| hypothetical protein Atu0989 [Agrobacterium tumefaciens str. C58]
 gi|159139868|gb|AAK86798.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 301

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 13/220 (5%)

Query: 54  GLTPFYGLEYILVENLSLVIISITI--SLLLGYIS-----GSILKELFISYNRISQLSRI 106
           G  PF  +E  L +   ++    T+    +L  I+     G  L++L    +R  + +  
Sbjct: 82  GKLPFRTIETSLKDGRWMLTTETTLPGGWMLCVITDVSELGIELRDLRQERDRALKSALS 141

Query: 107 DCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GL N    + +L      +  + L+++  DID+FK +ND FGH  GD V+   + +
Sbjct: 142 DELTGLGNRRYAMDTLNHLLGPNKAQALAVIIMDIDHFKSVNDRFGHAYGDLVLKDFAAR 201

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L    G    +GR+GGEEF     GS    A  L   L   +  +   +   P    + S
Sbjct: 202 LSATAGRDDLLGRIGGEEFLLVLSGSRMHSADSLMRQLLSSLAQAS-PLGDRPDFRYSCS 260

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           AGIA     E  S ++  AD ALY AK +GRNR V ++ +
Sbjct: 261 AGIAYANPGESASEVLRHADTALYEAKNTGRNRYVIYATV 300


>gi|117924699|ref|YP_865316.1| response regulator receiver modulated diguanylate cyclase
           [Magnetococcus sp. MC-1]
 gi|117608455|gb|ABK43910.1| response regulator receiver modulated diguanylate cyclase
           [Magnetococcus sp. MC-1]
          Length = 476

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 87/164 (53%), Gaps = 11/164 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
           ++ +++  D L+G+ N ++    L +  ++        SI+ FDID+FKQ+NDNFGH VG
Sbjct: 283 KLEEIAFTDGLTGVANRASLQQILNAEMQRSRRHGGTFSIILFDIDHFKQVNDNFGHQVG 342

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  L+  +         + R GGEEF       + + A  LA  LR++IE    +I+
Sbjct: 343 DDVLRLLASTIADNLRATDTIARWGGEEFMVVCPEINIEAAHRLAEKLRQLIE----HIT 398

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                 IT S G+ +    +   ++  RAD ALY AK+ GRNRV
Sbjct: 399 FPEVKQITSSFGVTQFQKNDQSRSLTQRADCALYRAKEGGRNRV 442


>gi|300690006|ref|YP_003751001.1| diguanylate kinase, GGDEF domain [Ralstonia solanacearum PSI07]
 gi|299077066|emb|CBJ49684.1| putative Diguanylate kinase, GGDEF domain [Ralstonia solanacearum
           PSI07]
          Length = 467

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 89/176 (50%), Gaps = 8/176 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L+EL  +  ++  L+  D L+G  N   FI  + +            S++  D+D+FK I
Sbjct: 291 LQELQRTNQKLEHLAATDPLTGAANRRQFIERVETEIARAKRGGAPFSLLALDLDHFKVI 350

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND++GH VGD+V+     +            R+GGEEF      ++   A  +A  +R+ 
Sbjct: 351 NDSYGHQVGDEVLKGFVKKCFDAIRPYDGFARVGGEEFMVLLPQAALDAAHSVAERVRRA 410

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           I  S   I  G S+ +T+S GI++  H  E + +I+  AD+ LY AK  GRNRV+ 
Sbjct: 411 IAESAFEIGVGRSVGLTVSVGISQFGHDGESLDSILRVADERLYRAKHEGRNRVIA 466


>gi|225871899|ref|YP_002753353.1| GGDEF domain protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793514|gb|ACO33604.1| GGDEF domain protein [Acidobacterium capsulatum ATCC 51196]
          Length = 641

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 86/164 (52%), Gaps = 15/164 (9%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD---KVIA 156
           D L+GL NH   +  L    E+       LS++  DID+FK+IND  GHP+GD   K I+
Sbjct: 469 DGLTGLWNHRIMMERLRGEVERSRRDGTPLSVILADIDHFKRINDEHGHPMGDLVLKEIS 528

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            L ++LV  +    +VGR GGEEF     GS    A   A  LR+ +E ++I     P +
Sbjct: 529 VLLERLVRPYD---WVGRYGGEEFLIILPGSEFDVACSRAEQLRRAVEMAEIGNGERP-L 584

Query: 217 HITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259
            +T S G+A     E  +  + R  D ALY AK SGRN VV  S
Sbjct: 585 RVTSSFGVASGGSMEHGAEEMIRVVDAALYRAKASGRNCVVATS 628


>gi|254457265|ref|ZP_05070693.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207086057|gb|EDZ63341.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 444

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 84/165 (50%), Gaps = 12/165 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPV 150
           +  +LS ID L+G+ N S F       I  +  Y  +  S+VF DID+FK IND +GH  
Sbjct: 281 KYEELSTIDNLTGIFNRSKFEMELRNEIKRIERYTTDTFSLVFLDIDHFKNINDKYGHLE 340

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD  +  ++  +     +   + R GGEEF      +    A  +    RKIIE  Q  +
Sbjct: 341 GDNTLRDMARLIEKNLRSTDTLARWGGEEFVIVMPLTPLALAKEVTEKFRKIIEQEQFYV 400

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                 ++T S GI+E    +   +II RADQA+Y AK +GRNRV
Sbjct: 401 VG----NVTCSFGISEFKKGDNAQSIILRADQAMYKAKANGRNRV 441


>gi|251795051|ref|YP_003009782.1| diguanylate cyclase [Paenibacillus sp. JDR-2]
 gi|247542677|gb|ACS99695.1| diguanylate cyclase [Paenibacillus sp. JDR-2]
          Length = 559

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 92/182 (50%), Gaps = 17/182 (9%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           ELF +  ++  ++  D L+G  N    +  L         +    SI  FDID FK IND
Sbjct: 373 ELFQANKKLEHMAITDGLTGCYNRRYLLQQLEHEIAVNVQFGIPFSIFLFDIDLFKAIND 432

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGD+VI    + +     +   + R GGEEF      ++  +A I+A+ +++ +E
Sbjct: 433 QYGHLVGDEVICSTVEAVKNTLRSADILARYGGEEFTVYLPHTTRDQADIIADMVKESVE 492

Query: 205 NSQINISSG-PSIHITISAGIA------ERCHKEP---ISTIIYRADQALYVAKKSGRNR 254
            + +    G  S+ +TIS G+       ER   +P   +  ++ +AD ALY AK +GRNR
Sbjct: 493 QNVVRTGIGSQSVRVTISMGVVSVEQFDERALDDPKAFLRELLAQADAALYEAKYNGRNR 552

Query: 255 VV 256
           +V
Sbjct: 553 IV 554


>gi|158425004|ref|YP_001526296.1| hypothetical protein AZC_3380 [Azorhizobium caulinodans ORS 571]
 gi|158331893|dbj|BAF89378.1| hypothetical protein [Azorhizobium caulinodans ORS 571]
          Length = 285

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 86/162 (53%), Gaps = 11/162 (6%)

Query: 104 SRIDCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           SR D L+ L N + F    +  LG         ++  FDID+FK+IND +GHP GD V+ 
Sbjct: 113 SRRDVLTQLPNRAGFDEQAMRILGDCQRAGLPAAVALFDIDHFKKINDGWGHPAGDAVLK 172

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            L+D    V  +     R GGEEF     G S + A +    +R+ I     + S   S 
Sbjct: 173 NLADAAQDVTRSTDAFARFGGEEFVMILKGVSAEAAFVHVERIRRAISRDVPHPSG--SG 230

Query: 217 HITISAGIAE-RCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
            IT+SAG+A+ R + +  ++  I RAD+ALY AK +GR+R +
Sbjct: 231 RITVSAGLADVRTYDQAGLTAAISRADEALYAAKAAGRDRTM 272


>gi|261339821|ref|ZP_05967679.1| putative GGDEF domain protein [Enterobacter cancerogenus ATCC
           35316]
 gi|288318105|gb|EFC57043.1| putative GGDEF domain protein [Enterobacter cancerogenus ATCC
           35316]
          Length = 482

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 70/131 (53%), Gaps = 6/131 (4%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+++  DIDYFK INDN+GH  GDK++   + ++  V G    V R+GGEEFA  A    
Sbjct: 332 LTVMLLDIDYFKSINDNYGHECGDKILTAFAQKVQQVVGEDGLVARMGGEEFAVVANTGD 391

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQA 243
            Q    LA  +R  I N         ++ +T+S G+       R   E  +T++  AD  
Sbjct: 392 AQRGFELAERIRLTIANHPFTWRQQ-TLFLTVSIGLGSGKADPRVLTEVFNTLLTEADDY 450

Query: 244 LYVAKKSGRNR 254
           LY +KK+GRNR
Sbjct: 451 LYRSKKAGRNR 461


>gi|152997836|ref|YP_001342671.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150838760|gb|ABR72736.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 452

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 86/162 (53%), Gaps = 10/162 (6%)

Query: 102 QLSRIDCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +L+  D L+G  N   +        +L +     S++  D+D+FK+IND FGH VGD V+
Sbjct: 294 ELATRDKLTGTFNRYKWDEQIKDELALANRGHHFSLILLDVDHFKKINDGFGHDVGDNVL 353

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L + L         + R+GGEEFA     ++ ++A +LA  LRK I  + +N +  P 
Sbjct: 354 KLLVNTLRKRLRETDVLFRIGGEEFAILLRDTNLKDAGVLAEQLRKKI--NLLNENGMPP 411

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              TIS G+ +    +  + I+ RAD  LY AK +GRNRVV 
Sbjct: 412 --FTISLGVTDYQDFDDQTRIVKRADILLYEAKGAGRNRVVV 451


>gi|315304308|ref|ZP_07874646.1| ggdef domain-containing protein [Listeria ivanovii FSL F6-596]
 gi|313627317|gb|EFR96112.1| ggdef domain-containing protein [Listeria ivanovii FSL F6-596]
          Length = 229

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/202 (34%), Positives = 108/202 (53%), Gaps = 19/202 (9%)

Query: 72  VIISITISLLLGYISGSIL------KELFISYNRISQLSRIDCLSGLLNHSAFISSL--G 123
           +I  + ISL++G++S  ++      K+LF  Y + S L  +  LS +      I+ +  G
Sbjct: 32  MITFVVISLVIGFVSAGLMDNMIKSKQLFQKYEQDSTLDYLTQLSNVRQFDEKINHVMDG 91

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV--VVFGTPMFVGRLGGEEFA 181
           +  E ++++  DID+FK IND + H  GD ++  L+  L      G+  F  R GGEEF+
Sbjct: 92  TIRE-VTLMLIDIDFFKNINDTYEHDAGDAILKQLAKILKGNTTDGSEAF--RNGGEEFS 148

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIY 238
              L  S  E    A  +R+  E     I +G ++ ITIS G++  CH + I+T   +  
Sbjct: 149 LILLYCSVDEGNYFAEHIRRETEEYDFVIPTGQTVKITISIGVS-GCH-DGITTSERLFK 206

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ALY AK +GRNR VC +D
Sbjct: 207 TADEALYKAKLAGRNR-VCIAD 227


>gi|228961677|ref|ZP_04123285.1| GGDEF domain protein [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229051085|ref|ZP_04194632.1| GGDEF domain protein [Bacillus cereus AH676]
 gi|229112827|ref|ZP_04242359.1| GGDEF domain protein [Bacillus cereus Rock1-15]
 gi|228670661|gb|EEL25973.1| GGDEF domain protein [Bacillus cereus Rock1-15]
 gi|228722296|gb|EEL73694.1| GGDEF domain protein [Bacillus cereus AH676]
 gi|228798027|gb|EEM45032.1| GGDEF domain protein [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 352

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 100/208 (48%), Gaps = 26/208 (12%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRI----------SQLSRIDCLSGLLN 114
           L++ + +V + +  S++ GYI+       FIS N +           Q + ID L+GL N
Sbjct: 150 LIKEIHIVGLYLISSIITGYIT-------FISANYVLQSNELFQTMKQYATIDALTGLGN 202

Query: 115 HSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
              F       IS+    N+ L ++  DID+FK +ND +GHP GD+V+  +   L  +  
Sbjct: 203 VRQFDLEMNRHISNKHLKNDSLCLLLIDIDHFKHVNDTYGHPAGDEVLKQVGHILREMSA 262

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
            P  V R GGEEFA             +    R  +E     +  G  I IT+S G++E 
Sbjct: 263 FPDLVFRKGGEEFALLIPRKGIAYGIHVGEQTRIAVEKHSFELLDGTKIKITVSVGVSE- 321

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++      I  AD ALY +K++GRN+V
Sbjct: 322 -YEGASEQFIQAADDALYYSKRNGRNKV 348


>gi|167588302|ref|ZP_02380690.1| diguanylate cyclase [Burkholderia ubonensis Bu]
          Length = 463

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 11/167 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPVG 151
           ++ L+R D L+GL N  A  ++L    E+L        S++F D D+FKQ ND +GH  G
Sbjct: 292 LTDLTRTDPLTGLRNRRALDAALSDEWERLRRSSSGNLSLLFIDADHFKQYNDRYGHAQG 351

Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209
           D  + +L++ +            R GGEEF A    + E  AA +A  +R  +E +++  
Sbjct: 352 DTALRYLAECIRKHTRRRSDIAARYGGEEFVAVLPDTDEIGAAKVAEAIRDEVERNRLPG 411

Query: 210 -ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              + P   ++I    A +     I  +   AD ALY AK+ GRNRV
Sbjct: 412 FPDAVPPFTVSIGCATARKARPASIEALANHADSALYAAKRQGRNRV 458


>gi|170729116|ref|YP_001763142.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169814463|gb|ACA89047.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
          Length = 485

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 99/186 (53%), Gaps = 5/186 (2%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS 130
           +V+I +  +L LG     +  E+  S ++++  +         +HS   + + +    +S
Sbjct: 302 IVVILVIANLTLGRYQRKL--EVMASTDKLTGATNRQMFEEYFSHSLQNAEISA--TPVS 357

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  DIDYFK +NDNFGH +GD VI  +++ +     +   V R GGEEF          
Sbjct: 358 VILLDIDYFKSVNDNFGHSIGDLVIKTVANIIRRQLRSEDIVCRWGGEEFLLLLPNIDLS 417

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
            AA +A  +R+ I   +I+++    I IT+S+G+A+    EP + +I R D ALY AK  
Sbjct: 418 HAADMAERIRESIAERKISVNEH-EIGITVSSGVAQYKLGEPRADLINRVDVALYQAKDR 476

Query: 251 GRNRVV 256
           GR++VV
Sbjct: 477 GRDQVV 482


>gi|307824284|ref|ZP_07654510.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
 gi|307734664|gb|EFO05515.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
          Length = 295

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 117/245 (47%), Gaps = 19/245 (7%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL-----SLVIISITI 78
           PH+  IY +  F++ + + +F  +   + + +      E  L+ N       L ++   +
Sbjct: 55  PHSAFIYTNTEFALEVKSGVFTRHSCNYALKVEQQQLGELKLMRNHRFSDGDLQLLETLL 114

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEK-LSI 131
             L+  +  + L      +++  +++  D L+   N ++F        SL + N K LS+
Sbjct: 115 CCLIYPLKNATL------FHQALKMAYTDPLTQTHNRASFNDTIKREMSLATRNVKNLSL 168

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +FFDID+FK IND +GH  GD  +A  +  +         + R GGEEF      +    
Sbjct: 169 IFFDIDHFKTINDTYGHDCGDITLALGAKWIKESLRDSDIIFRYGGEEFVILLSDTDANG 228

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A +LA  +R  IEN  I      +I IT S G++     + I + I RAD+A+Y AK  G
Sbjct: 229 AGLLAERIRTSIENHTIAYGM-ETIKITASLGVSTLRANDTIESFILRADKAMYAAKNKG 287

Query: 252 RNRVV 256
           RN+VV
Sbjct: 288 RNQVV 292


>gi|209542639|ref|YP_002274868.1| diguanylate cyclase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530316|gb|ACI50253.1| diguanylate cyclase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 472

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 81/157 (51%), Gaps = 9/157 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYN--------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+ +LN   F+ S+ SY           +S++F DID+FK IND FGH  GD V+  +
Sbjct: 299 DPLTRVLNRR-FLPSIISYELRVAHQTGRPMSVLFLDIDHFKHINDTFGHAAGDSVLQAI 357

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         + R GGEEF      +  ++  I A  LR+ IEN+ I +  G    I
Sbjct: 358 ARVLEEASRLSDVIFRYGGEEFLVLMGDTDTEQMLIGAERLRQKIENTPIRLPDGNLHQI 417

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T+S G A+         ++  AD ALY AK++GRNR+
Sbjct: 418 TVSIGAAQYAGHPDYEELLRAADAALYRAKRNGRNRI 454


>gi|116252228|ref|YP_768066.1| GGDEF family sensory box protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256876|emb|CAK07970.1| putative transmembrane GGDEF family sensory box protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 391

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 87/164 (53%), Gaps = 2/164 (1%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           ++ +L+  D L+G+ N   F +SL        + V  DID FK++ND +GH  GD V+  
Sbjct: 212 KLIRLANTDMLTGIPNRQHFFNSLPKCLAPGDAFVLIDIDLFKRVNDMYGHDKGDVVLTN 271

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           ++  +     +    GRLGGEEF+    G ++  A  LA  +R+ + N+   +  G  + 
Sbjct: 272 VARTIARSAPSSCVFGRLGGEEFSLFLRGQTQSSAFALAERIREAV-NAVSLVFEGNQVT 330

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            ++SAG+A          +  RADQALY+AK  GRNRV  FS +
Sbjct: 331 PSVSAGVALWEAGLTEQDVQKRADQALYIAKNKGRNRVELFSSV 374


>gi|307822936|ref|ZP_07653166.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
 gi|307735711|gb|EFO06558.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
          Length = 463

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 85/158 (53%), Gaps = 9/158 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL+N  AF+  L + +++        +    D+D+FK IND +GH  GD V+  L+
Sbjct: 304 DPLTGLINRRAFLPRLQNEHQRALRTGNTYTFAMLDLDHFKSINDAYGHHCGDAVLCALA 363

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +V    +   V R+GGEEF          EA I    +RK  E+S   ++ G SI +T
Sbjct: 364 AVMVENCRSIDAVVRMGGEEFGILFPECHIDEALIALERIRKRFESSS-TMADGKSIFVT 422

Query: 220 ISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVV 256
           +S G+A     E   T ++ RAD+ALY AK  GRN++V
Sbjct: 423 VSIGVAAFAGTEEKDTEVVKRADRALYAAKAEGRNQIV 460


>gi|304394293|ref|ZP_07376216.1| diguanylate cyclase [Ahrensia sp. R2A130]
 gi|303293733|gb|EFL88110.1| diguanylate cyclase [Ahrensia sp. R2A130]
          Length = 378

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 27/205 (13%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           P Y + +I+V  L   +   TI+L         ++++ +S     Q +  D L+GL N  
Sbjct: 180 PIYAVVWIIVSQL---LAGTTIAL--------SMRDVIVSAR---QEAETDALTGLANRR 225

Query: 117 AF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           AF   I   G  ++  ++V  DID+FK+IND+FGH  GD+ IA ++  +           
Sbjct: 226 AFDRAIQRQGRKDDLAALVMIDIDHFKRINDSFGHDEGDRCIALVAGLIAQAAPEGTHAV 285

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           RLGGEEFA          A+ +A ++     ++ I  ++ P ++ T+S G++E     P 
Sbjct: 286 RLGGEEFAVLVNDGGVATASAVAQNI-----HNNIRQATRP-LNFTVSIGVSE----GPR 335

Query: 234 STIIYRADQALYVAKKSGRNRVVCF 258
             +  RAD+ALY AK  GRN+   +
Sbjct: 336 DVLYKRADEALYQAKNDGRNKTCVW 360


>gi|237799945|ref|ZP_04588406.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331022800|gb|EGI02857.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 421

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 102/215 (47%), Gaps = 28/215 (13%)

Query: 50  LFYI--GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107
           LFY    ++P   +E  L   +S   IS  ++  LG               ++ +++  D
Sbjct: 216 LFYAEHSISPLRNVEGTLTHYVS---ISQDVTTRLG------------REQKLLEIAHSD 260

Query: 108 CLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+GL N  +        IS+        S++  DID+FK++ND  GHP GD  +  ++ 
Sbjct: 261 TLTGLDNRRSAEHTLERMISTAWITGNPFSLIICDIDHFKRVNDQHGHPAGDAALKSVAS 320

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
                  T     R GGEEF      SS ++A  LA  +RK +E  +I  +      +TI
Sbjct: 321 MFKHQIRTHDVAARWGGEEFLIHVPDSSLKQAVELAERVRKSVEGLEIPETGS----VTI 376

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S G+A     E  +++I RAD+ALY AK+ GRNRV
Sbjct: 377 SLGVAALDPGETAASLIQRADKALYQAKRLGRNRV 411


>gi|330988113|gb|EGH86216.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 425

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 95/188 (50%), Gaps = 22/188 (11%)

Query: 85  ISGSILKELFISYNRISQLSR---------IDCLSGLLNHSA-------FISSLGSYNEK 128
           + G+I   + IS +  ++L R          D L+GL N  A        I +     + 
Sbjct: 233 LEGTITHYVSISQDVTTRLGREQKLLEIAHSDPLTGLNNRRAAEHTLERLIDTARISGKP 292

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            S++  DID+FK +ND +GHP GD+V+  ++  L           R GGEEF      SS
Sbjct: 293 FSLIIGDIDHFKSVNDRYGHPAGDRVLTSVAVILKQRIRLQDVAARWGGEEFLILVPDSS 352

Query: 189 EQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
              AA LA+ +R+ +E   I N  S     +TIS G+A+    E  +++I RAD+ALY A
Sbjct: 353 LDHAAELADRIREGVEGLLIPNTGS-----VTISLGVAQLSPGETAASLIQRADKALYQA 407

Query: 248 KKSGRNRV 255
           K+ GRNRV
Sbjct: 408 KRRGRNRV 415


>gi|170727525|ref|YP_001761551.1| PAS/PAC sensor-containing diguanylate cyclase [Shewanella woodyi
           ATCC 51908]
 gi|169812872|gb|ACA87456.1| diguanylate cyclase with PAS/PAC sensor [Shewanella woodyi ATCC
           51908]
          Length = 482

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 8/161 (4%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+G  N   F       +SS     ++ +I+  D+D+FK IND FGH  GD V+
Sbjct: 310 LASTDPLTGAYNRRCFNELSQKSMSSTERQEQEFTILLIDLDFFKSINDKFGHAAGDDVL 369

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
                 +         +GR GGEEF  A   S  ++A  +AN +R  IEN  +  + G  
Sbjct: 370 IETVKAINTCIRESDILGRYGGEEFVVALPNSDNKKAREVANRIRLCIENMVVK-TQGHD 428

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           I +T S G+A       +   I +AD  LY AK +GRN+VV
Sbjct: 429 IKLTASIGLATSSGGHQLEKQINQADTYLYYAKDNGRNQVV 469


>gi|104782240|ref|YP_608738.1| diguanylate cyclase [Pseudomonas entomophila L48]
 gi|95111227|emb|CAK15947.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           entomophila L48]
          Length = 531

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 93/179 (51%), Gaps = 14/179 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIND 144
           ++L+E     NR +Q    D L+GL+N       +S L +     S +  D+D+FK++ND
Sbjct: 359 NLLQERIGRLNRDAQ---TDPLTGLVNRRGLEFALSLLQAEGRDFSAIVLDVDHFKRVND 415

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD V+  L++ +         + R GGEEF     G+S + A  +A  LR  ++
Sbjct: 416 GHGHAVGDTVLHRLAELMRGACREGDVLCRTGGEEFLMLLPGASLEAALSVAERLRLAVQ 475

Query: 205 NSQINISSGPSIHITISAGIAER---CHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           N+ I     P   +T+S G+A        EP +T+   AD+ALY AK++GRNRV    D
Sbjct: 476 NTAI----APVGGVTVSLGVARWQALPDSEPDATLKA-ADRALYQAKRAGRNRVCSVRD 529


>gi|91227013|ref|ZP_01261550.1| GGDEF family protein [Vibrio alginolyticus 12G01]
 gi|91188815|gb|EAS75101.1| GGDEF family protein [Vibrio alginolyticus 12G01]
          Length = 480

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 11/172 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFG 147
           ++L I+  ++ +++  D L+ L N    I  L   N     L+++ FDID FK IND +G
Sbjct: 297 RQLTIANQQLLEMTLTDSLTKLYNRRHLIEQLALLNHLKRNLTVMVFDIDDFKSINDRYG 356

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+ I  +++    +    M + R+GGEEFA      SE+EA   AN L K + +  
Sbjct: 357 HLAGDRAIVAIAEAAKSMTDDRMTLARIGGEEFALVTSSLSEREALNFANMLCKAVYDQP 416

Query: 208 INISSGPSIHITISAGIAERCHKEPISTII---YRADQALYVAKKSGRNRVV 256
           + I  G +IH++IS G    C   P  T I     AD+ +Y  K  G+NR V
Sbjct: 417 V-ILGGQAIHLSISLG----CAYYPEFTHIVSLQDADELMYQGKSEGKNRAV 463


>gi|77463986|ref|YP_353490.1| response regulator receiver modulated diguanylate cyclase
           [Rhodobacter sphaeroides 2.4.1]
 gi|77388404|gb|ABA79589.1| response regulator receiver modulated diguanylate cyclase
           [Rhodobacter sphaeroides 2.4.1]
          Length = 461

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 89/168 (52%), Gaps = 13/168 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+ +D L+GL N     + L +        +E+ +++  D+D FK +ND +GH  GD V
Sbjct: 287 RLAVVDPLTGLYNRRYAGAHLAAVAERARAADERFAVMVIDLDRFKSVNDRWGHGAGDAV 346

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSG 213
           +  ++ +L         + R+GGEEF  A       E A  +A  LR+ +E   + +  G
Sbjct: 347 LVAVARRLHANLRPGDLIARIGGEEFLVALPDVPRPEDAHAVAERLREAVEEEPVPLPGG 406

Query: 214 PSIHITISAGIA----ERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            S+ +TIS G+A    E   + EP+  ++ RAD AL +AK +GRN+V 
Sbjct: 407 GSLRVTISVGLALSPDEAGRRAEPVDAVVQRADSALLLAKSAGRNQVT 454


>gi|218233533|ref|YP_002370191.1| ggdef family protein [Bacillus cereus B4264]
 gi|218161490|gb|ACK61482.1| ggdef family protein [Bacillus cereus B4264]
          Length = 352

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 100/208 (48%), Gaps = 26/208 (12%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRI----------SQLSRIDCLSGLLN 114
           L++ + +V + +  S++ GYI+       FIS N +           Q + ID L+GL N
Sbjct: 150 LIKEIHIVGLYLISSIITGYIT-------FISANYVLQSNELFQTMKQYATIDALTGLGN 202

Query: 115 HSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
              F       IS+    N+ L ++  DID+FK +ND +GHP GD+V+  +   L  +  
Sbjct: 203 VRQFDLEMNRHISNKHLKNDSLCLLLIDIDHFKHVNDTYGHPAGDEVLKQVGHILREMSA 262

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
            P  V R GGEEFA             +    R  +E     +  G  I IT+S G++E 
Sbjct: 263 FPDLVFRKGGEEFALLIPRKGIAYGIHVGEQTRIAVEKHSFELLDGTKIKITVSVGVSE- 321

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++      I  AD ALY +K++GRN+V
Sbjct: 322 -YEGASEQFIQAADDALYYSKRNGRNKV 348


>gi|1336656|gb|AAB01344.1| Orf1 [Bacillus subtilis subsp. subtilis str. JH642]
          Length = 199

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 92/167 (55%), Gaps = 12/167 (7%)

Query: 104 SRIDCLSGLLNHSAFISSLGS-YNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +  D L+G+ N   F  +  + Y +       + ++++ DID+FK IND +GH  GD+V+
Sbjct: 32  AHFDFLTGVYNRRKFEETTKALYQQAADTPHFQFALIYMDIDHFKTINDQYGHHEGDQVL 91

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L  +L           R+GGEEFA      S  +AA +A  +R  + ++ I +++G  
Sbjct: 92  KELGLRLKQTIRNTDPAARIGGEEFAVLLPNCSLDKAARIAERIRSTVSDAPIVLTNGDE 151

Query: 216 IHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + +TIS G A   +  ++P S  I  ADQ LY AK++GRNR VCFS+
Sbjct: 152 LSVTISLGAAHYPNNTEQPGSLPIL-ADQMLYKAKETGRNR-VCFSE 196


>gi|253998775|ref|YP_003050838.1| diguanylate cyclase [Methylovorus sp. SIP3-4]
 gi|253985454|gb|ACT50311.1| diguanylate cyclase [Methylovorus sp. SIP3-4]
          Length = 398

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 120/239 (50%), Gaps = 19/239 (7%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYIL------VENLSLVIISITISLLLGYISGSILKEL 93
           A + F   + + Y G++  +    IL        N+  +++   + +L+ +  G ++   
Sbjct: 158 AVIFFTMAVLMAYRGISALFADGPILDHPMGWQPNVLTLLVGSMLQMLVTF--GLVMMVS 215

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF------ISSLGSYNEK-LSIVFFDIDYFKQINDNF 146
           F   + + Q +  D L+G+LN          ++S G  N+  L ++  DID FK IND +
Sbjct: 216 FRKSSELEQYAHYDALTGILNRRGLEEAARRLASFGRRNDSGLVMLLLDIDLFKHINDRW 275

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GHPVGD+V+  L+ Q+         + R GGEEF     GS+EQE    A  +R+ +E+ 
Sbjct: 276 GHPVGDEVLRQLTRQIKTQTREEDVLARYGGEEFCLLLPGSTEQEGIQCAERIRQSVES- 334

Query: 207 QINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            + I  GP ++  T+S GI   R       +++  AD ALY AKK+GRN+ V +S +  
Sbjct: 335 -LRIVQGPVTLQFTVSVGITCARLAGYDFRSLLASADAALYAAKKAGRNQGVAYSSLSG 392


>gi|239833309|ref|ZP_04681637.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239821372|gb|EEQ92941.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 379

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 84/162 (51%), Gaps = 9/162 (5%)

Query: 102 QLSRIDCLSGLLNH---SAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +L+  D L+ + N     AFISS+       E ++IV  DID+FK +ND FGH  GD +I
Sbjct: 215 ELAHTDPLTQVRNRRGMQAFISSVHLDQGAREPVTIVLADIDHFKMVNDRFGHHAGDMII 274

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGP 214
              +  L    G    V RLGGEEFA    G+S      L   LR +       +IS+  
Sbjct: 275 VDFAQLLQKWAGRGSCVARLGGEEFAILLPGTSMHIGVTLIEALRLEFASRKWPHISA-- 332

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +H+T S G+      EP ++ I RAD  LY AK+ GR+R+V
Sbjct: 333 HLHLTASFGLTTLEQGEPFNSAIARADTNLYKAKQRGRDRLV 374


>gi|158341558|ref|YP_001522722.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158311799|gb|ABW33408.1| diguanylate cyclase (GGDEF domain) [Acaryochloris marina MBIC11017]
          Length = 394

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 106/205 (51%), Gaps = 11/205 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ 118
           LVEN   + + +   L        I ++LF +  ++S L+  D L+GL N   F      
Sbjct: 189 LVENNKKLELEVQAKLHAQQNLEIINEKLFEANKKLSLLANQDALTGLANRRYFDVYLQQ 248

Query: 119 -ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLG 176
              S       LSI+  DID+FK  ND++GHP GD  +  +S  +  V G +  F  R G
Sbjct: 249 VWESAQENKHPLSILICDIDFFKGYNDSYGHPEGDHCLQRVSQIIHRVAGKSEGFAARFG 308

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIA--ERCHKEPI 233
           GEEFA     ++  ++  +A+ LR  I N+++ + +S  S ++T+S G+   +      I
Sbjct: 309 GEEFAIVLPNTNLIDSQTIADMLRSEIHNARLPHRASTVSEYVTVSIGVTSIQFQSDGSI 368

Query: 234 STIIYRADQALYVAKKSGRNRVVCF 258
           + +I RADQALY AKK GRN+ V  
Sbjct: 369 NDLILRADQALYEAKKLGRNQFVTL 393


>gi|34557608|ref|NP_907423.1| hypothetical protein WS1243 [Wolinella succinogenes DSM 1740]
 gi|34483325|emb|CAE10323.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 480

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 85/175 (48%), Gaps = 8/175 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           S ++EL     R  + + ID L+G+        SL         Y  + S+ FFDID+FK
Sbjct: 302 SKIEELTQELCRAQEEASIDSLTGVHTRRFLEESLSRFEALFLRYESRYSVAFFDIDFFK 361

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+V+A     L           R GGEEF       +  EA   A  +R
Sbjct: 362 KINDKYGHEAGDRVLATFGRLLKQSVRQEDIAARYGGEEFIVILPEMNLVEAWRFAERIR 421

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++E S + +     I +++S GIAER   E    +I  AD  LY AK+ GRN++
Sbjct: 422 ALVERS-VFVYQDMRIKVSVSGGIAERSECEDRKALIKFADARLYEAKEGGRNQI 475


>gi|88858283|ref|ZP_01132925.1| putative two-component response regulator protein with GGDEF domain
           [Pseudoalteromonas tunicata D2]
 gi|88819900|gb|EAR29713.1| putative two-component response regulator protein with GGDEF domain
           [Pseudoalteromonas tunicata D2]
          Length = 421

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 85/174 (48%), Gaps = 11/174 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +I   +  D L+ L N   F           S  + L +   DIDYFKQIND +GH  GD
Sbjct: 249 KIKDAANRDYLTNLYNRRYFYQQAQYKLKHDSKKQTLFLAMLDIDYFKQINDTYGHQAGD 308

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  LS  L   F   +   RLGGEEFA         +A  L ++ R  I N   + + 
Sbjct: 309 EVLVSLSSLLQQHFPETL-TARLGGEEFAVVFEAEDNDDANELMDEFRFFISNRMFSFAE 367

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            P I ++IS GIA   +   +  +I +AD ALY AK  GRN+VV F  +E   C
Sbjct: 368 QP-IAVSISIGIAA-VNDAALEHVIQQADLALYDAKGQGRNQVVFF--VEQVQC 417


>gi|308273736|emb|CBX30338.1| hypothetical protein N47_D31470 [uncultured Desulfobacterium sp.]
          Length = 397

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 88/177 (49%), Gaps = 7/177 (3%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            I + L IS  +  QLS ID L+GL N       L         YN  LS++  DID FK
Sbjct: 213 EIKEALRISKEQYKQLSIIDDLTGLFNKRRLNEQLKWETSRALRYNRPLSLLLMDIDNFK 272

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GH  GD+V+A L+  +           R GGEEF      +S   +  +A  +R
Sbjct: 273 SVNDIYGHSQGDRVLAGLARMVKNCIRDSDIAFRYGGEEFIIILPETSIDNSLKVAGRIR 332

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + + +    ++    I IT+S G  +    E  +  I RADQ +Y AKK+G++RV+C
Sbjct: 333 QSLASLIFPVNLSDKITITLSIGATQYAPGEDQNDFIARADQYMYYAKKNGKDRVIC 389


>gi|300690703|ref|YP_003751698.1| signal transduction ggdef domain transmembrane protein [Ralstonia
           solanacearum PSI07]
 gi|299077763|emb|CBJ50401.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum PSI07]
          Length = 551

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 9/155 (5%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+L    F++   +         E+L +V  D+D+FK+IND +GH VGD  +   +
Sbjct: 395 DHLTGVLTRRRFLALFETVLTRTHVRGEQLVLVLADLDHFKRINDTWGHAVGDLALQRFA 454

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
                V  +   +GRLGGEEFA     ++ ++AA +   LR  +  +  ++ SG  + +T
Sbjct: 455 SLATNVMRSSDLIGRLGGEEFAVVMSRTTLEDAAGVVERLRAAVAEADESLPSG--LAMT 512

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +S G+      +  S ++ RAD ALY AK+SGRNR
Sbjct: 513 VSLGMTACRPGDTASEMLRRADLALYRAKESGRNR 547


>gi|160873548|ref|YP_001552864.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160859070|gb|ABX47604.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           baltica OS195]
 gi|315265778|gb|ADT92631.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           baltica OS678]
          Length = 621

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 93/182 (51%), Gaps = 11/182 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL     ++++ S ID L+G+ N SAF   L             ++++  DID FK I
Sbjct: 441 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLIAESRISRRQETPIALLMLDIDRFKLI 500

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD+ +  ++  L      P   V R GGEEFA     ++E  A  +A  +R 
Sbjct: 501 NDRFGHLAGDEALRTIAQTLQQHLKRPTDLVSRYGGEEFAIILPNTAEDGALQVAETIRD 560

Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +       G +I +TIS G++     + +  + ++ +AD+ALY AK  GRN+V  FS
Sbjct: 561 AVASLHFEW-EGVAIPLTISIGVSADIVTNDQHSTKLLEQADKALYQAKNGGRNQVSLFS 619

Query: 260 DI 261
            +
Sbjct: 620 SV 621


>gi|108762534|ref|YP_635470.1| response regulator/GGDEF domain-containing protein [Myxococcus
           xanthus DK 1622]
 gi|108466414|gb|ABF91599.1| response regulator/GGDEF domain protein [Myxococcus xanthus DK
           1622]
          Length = 673

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 97/191 (50%), Gaps = 22/191 (11%)

Query: 84  YISGSILKELF-------ISYNRIS-QLSRIDCLSGLLNHSAFISSLGS-------YNEK 128
           Y+S  +L+E         +   R+S + +  D L+GLL    F+  L +         + 
Sbjct: 484 YLSKPVLREELRARVQARLERTRLSRERAERDGLTGLLLRRPFLDGLRARLAESRRQGKP 543

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L++ F D+D+FKQ+ND +GH  GD+V+ +L   L   F      GR GGEEF    LG S
Sbjct: 544 LALCFLDVDHFKQVNDRYGHLAGDRVLMWLGRLLGARFRREDVRGRWGGEEFVVGLLGES 603

Query: 189 EQEAA-ILANDLRKIIENSQI--NISSGPSIHITISAGIA-ERCHKEPISTIIYRADQAL 244
              A+ ILA   R   E S +  +  +G   H+T SAGIA      + + +++  AD  L
Sbjct: 604 AGSASEILA---RTAAELSDMTFDGDTGEPFHVTFSAGIAVSPGDGDTVESLLRTADARL 660

Query: 245 YVAKKSGRNRV 255
             AK++GRNR+
Sbjct: 661 LRAKENGRNRI 671


>gi|308048339|ref|YP_003911905.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
 gi|307630529|gb|ADN74831.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
          Length = 409

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 85/173 (49%), Gaps = 22/173 (12%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           Q++ +D L+G+    A   +L     + S+   DID+FK+ ND +GH VGD+V+  ++ +
Sbjct: 233 QMAFLDELTGIPGRRALNMALKRVGRRYSLAMMDIDHFKKFNDTYGHDVGDEVLKLVASR 292

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS------ 215
           L  V G    V R GGEEF     G + +  A     +R+ I +    +    S      
Sbjct: 293 LTRVKGGGQ-VFRYGGEEFTVLFPGKAPKACAAHLEAIREDIADYPFVVRKSKSRPDDEK 351

Query: 216 --------------IHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253
                         + ITIS G+AER  ++P    +I  ADQALY AKK+GRN
Sbjct: 352 AGRQQRGQGGGGKTVQITISMGLAERTGEQPDAEAVIKAADQALYKAKKAGRN 404


>gi|162148023|ref|YP_001602484.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786600|emb|CAP56182.1| putative signalling protein, GGDEF family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 471

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 81/157 (51%), Gaps = 9/157 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYN--------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+ +LN   F+ S+ SY           +S++F DID+FK IND FGH  GD V+  +
Sbjct: 298 DPLTRVLNRR-FLPSIISYELRVAHQTGRPMSVLFLDIDHFKHINDTFGHAAGDSVLQAI 356

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         + R GGEEF      +  ++  I A  LR+ IEN+ I +  G    I
Sbjct: 357 ARVLEEASRLSDVIFRYGGEEFLVLMGDTDTEQMLIGAERLRQKIENTPIRLPDGNLHQI 416

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T+S G A+         ++  AD ALY AK++GRNR+
Sbjct: 417 TVSIGAAQYAGHPDYEELLRAADAALYRAKRNGRNRI 453


>gi|254481269|ref|ZP_05094514.1| GGDEF domain protein [marine gamma proteobacterium HTCC2148]
 gi|214038432|gb|EEB79094.1| GGDEF domain protein [marine gamma proteobacterium HTCC2148]
          Length = 390

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 90/183 (49%), Gaps = 12/183 (6%)

Query: 90  LKELFISYNR-ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           L  + I Y + +S L+  D L+ LLN           I+    +    S +  DIDYFK+
Sbjct: 201 LASVLIEYQQHLSHLATEDPLTRLLNRRGLQDALRISIAHARRHGLPTSAIMIDIDYFKR 260

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND+FGH  GD VI  ++  +  +      V R GGEEF      +    A ILA  +R+
Sbjct: 261 VNDSFGHETGDHVIQLVASMIERLCRESDVVARTGGEEFLIILANTDSASARILAERVRQ 320

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            +    + +     I +TIS G+A    +  +  +   ADQA+Y+AK+ GRNRV   + +
Sbjct: 321 AVGERPLVVDQ-HRIPVTISLGVASASGEFNLDELSQEADQAMYLAKRGGRNRV---ASV 376

Query: 262 ENN 264
           EN 
Sbjct: 377 ENK 379


>gi|220924043|ref|YP_002499345.1| diguanylate cyclase [Methylobacterium nodulans ORS 2060]
 gi|219948650|gb|ACL59042.1| diguanylate cyclase [Methylobacterium nodulans ORS 2060]
          Length = 384

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 10/171 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF--ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           ++ KE      R+S L+  D L+G++N       +S+   + + +++ FD+D+FK+IND 
Sbjct: 206 ALAKERLEWEQRLSALT--DPLTGVVNRRGLEERASVLLASGRATLLLFDLDHFKRINDT 263

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH +GD V+         +       GRLGGEEFA    G S  E   +A  +R  +  
Sbjct: 264 FGHGIGDAVLVGFCTLARTLLPPQAVFGRLGGEEFACVLPGDSAAEP--IAETIRHALAG 321

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +      P++ +T+S G A    +  +  ++ RAD+ALY AK+ GR+RVV
Sbjct: 322 MRAECI--PNLRVTVSVGAAR--GEAGLDALLERADRALYRAKRLGRDRVV 368


>gi|104780511|ref|YP_607009.1| hypothetical protein PSEEN1308 [Pseudomonas entomophila L48]
 gi|95109498|emb|CAK14199.1| conserved hypothetical protein; GGDEF domain protein [Pseudomonas
           entomophila L48]
          Length = 358

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 102/217 (47%), Gaps = 20/217 (9%)

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCL 109
           L   GL P    +   ++ L+ + +     L LG +   +  +L     R+S LSR D L
Sbjct: 135 LLGTGLQP----QATQLQVLACLPMLTLYPLALGGVCYQLAIKLAEHKRRLSALSRTDSL 190

Query: 110 SGLLNHSAFISSLG-----SYNEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GLLNH ++   L         ++L   I   DID+FK IND +GH VGD V+  LS +L
Sbjct: 191 TGLLNHGSWKDLLLLKFQICQQQQLPAVIALIDIDHFKTINDTYGHVVGDCVLRQLSQEL 250

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII---ENSQINISSGPSIHIT 219
                     GR GG+EF     G+ E  A      LR+ +    N Q+     P + I+
Sbjct: 251 KRSLREDDLAGRYGGDEFCVILPGTQEAHACQAMERLRERVGDYRNPQL-----PDLRIS 305

Query: 220 ISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRV 255
           +S G+A      P     +  AD+ALY AK  GR++V
Sbjct: 306 LSIGLAAFQPGLPTPEHWLAEADRALYAAKHQGRDQV 342


>gi|18310542|ref|NP_562476.1| GGDEF/HD domain protein [Clostridium perfringens str. 13]
 gi|18145223|dbj|BAB81266.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 563

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 83/163 (50%), Gaps = 13/163 (7%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ NH  F   L          NEKLS++F DIDYFK  ND +GH  GD+ +  + 
Sbjct: 196 DGLTGVYNHRYFYDKLREKMHISEVENEKLSLIFMDIDYFKHYNDLYGHQKGDEALKKIG 255

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHI 218
             L  +      V R GGEEFA     +SE+EA  +A  +R  +E +      + P+ + 
Sbjct: 256 KLLKNIARENDLVARYGGEEFAIILPNTSEEEATKIAERIRNKVEKTYFEGQENQPNANF 315

Query: 219 TISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           T+S GIA   ++   E    ++  AD ALY AK   +NRV  +
Sbjct: 316 TVSVGIAVFPDKAKSEL--ELVKCADDALYRAKFFHKNRVETY 356


>gi|254459200|ref|ZP_05072622.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Campylobacterales bacterium GD 1]
 gi|207084093|gb|EDZ61383.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Campylobacterales bacterium GD 1]
          Length = 460

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 83/168 (49%), Gaps = 13/168 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148
           S  R+ +L+  D L+GL N S   +SL         Y     ++  DIDYFK +ND  GH
Sbjct: 295 SNERLKELAIKDYLTGLYNRSKLDNSLEYQIKRSKRYESVFGVIMMDIDYFKSVNDKHGH 354

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGDKV+   +  L  +      VGR GGEEF      + +     LA+ +R+ IE    
Sbjct: 355 QVGDKVLLEFAKVLTDISRETDIVGRWGGEEFLIIIENADKDGITNLAHKIRETIE---- 410

Query: 209 NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +   P +   T S G+      E I+ +I R D+ALY AK SGRN+V
Sbjct: 411 -MHDFPVVKRKTASLGVTIYNKDEKINELIGRVDKALYKAKNSGRNQV 457


>gi|296161270|ref|ZP_06844078.1| diguanylate cyclase [Burkholderia sp. Ch1-1]
 gi|295888428|gb|EFG68238.1| diguanylate cyclase [Burkholderia sp. Ch1-1]
          Length = 372

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 87/175 (49%), Gaps = 21/175 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ QL   D L+GL N   F   L         Y   ++ +F DID FK+IND +GH  
Sbjct: 189 ERLKQLGMTDSLTGLANRRYFDERLREEVMRAVRYRMPVACLFIDIDSFKRINDTYGHQT 248

Query: 151 GDKVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           GD+ +A ++    Q V +  T   V R GGEEF AA L     +A  +A  +R  +E   
Sbjct: 249 GDRALAAVAACVRQQVRLGDT---VARYGGEEF-AALLQGDRADALTVAERVRLAVERLA 304

Query: 208 INISSGPSIHITISAGIAER-CHKEPIS------TIIYRADQALYVAKKSGRNRV 255
           +    G  I +T+S G+A R     P         I+  AD+A+Y AK++GRNR+
Sbjct: 305 LQDDHGERIALTVSIGVASRMVSGTPTEAATLGGAIMEEADRAMYQAKRNGRNRI 359


>gi|297569589|ref|YP_003690933.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925504|gb|ADH86314.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2]
          Length = 612

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 97/185 (52%), Gaps = 12/185 (6%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLS 130
           S LL  +   I  E+ ++  R+ +L+  D L+GL N     ++L           +   S
Sbjct: 409 SKLLAAVCEQI--EVALANARLYRLAVTDSLTGLRNKRYCETALRKLVEAHRQDRHRPFS 466

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D+FK++ND  GHPVGD+V++ L++ +           R GGEEF        + 
Sbjct: 467 VLMLDLDHFKRVNDTHGHPVGDEVLSQLAELIRRQLRQDDVACRYGGEEFIVLVTDGPQT 526

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKK 249
              I A   R + E++  + + G ++H TIS G+A    H + ++ +I  ADQALY AK+
Sbjct: 527 GHKIAARLCRAVDEHT-FHCAGGLALHNTISIGVAGFPAHGKTVAEVIGAADQALYEAKR 585

Query: 250 SGRNR 254
           +GRNR
Sbjct: 586 AGRNR 590


>gi|218781597|ref|YP_002432915.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762981|gb|ACL05447.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 418

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 19/180 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-----------SIVFFDIDYFK 140
           +L     R+ +LS  D L+ L N  +F      Y +KL           ++   D+D FK
Sbjct: 244 DLLRHIKRVKELSSRDYLTNLFNRRSFFE----YGQKLYASAMRDQTVIAVAMLDVDEFK 299

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND+FGH  GD+V+  ++D L+  F     V R GG+EF        + E   L   +R
Sbjct: 300 SVNDSFGHDAGDEVLKTVADTLMESFRETDIVSRFGGDEFCIIMANPDKNEVPALLERIR 359

Query: 201 KIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +EN  I +  G  ++++IS G   E C  + +  +I +ADQ L  AK++G+N V   S
Sbjct: 360 TAVENKYIEV-DGQQVNVSISVGACTELC--DSLDIMIKKADQMLRQAKRAGKNNVQLIS 416


>gi|117618778|ref|YP_854578.1| TPR repeat-containing protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560185|gb|ABK37133.1| tetratricopeptide repeat family [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 596

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 14/176 (7%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHP 149
           L  S   + +L+  D L+ L N  A +  L +  ++   L+++  DID+FKQIND  GH 
Sbjct: 418 LHRSSRHLYKLATFDQLTELPNRRALLERLATQWQQEGPLTLLIIDIDHFKQINDRHGHQ 477

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF-AAAALGSSEQEAAILANDLRKIIENSQI 208
            GD+ I  L+ +L         VGR GGEEF  A  L ++  +   LA  LR+ I   QI
Sbjct: 478 AGDRAIQRLARELRSWAPDLQLVGRWGGEEFLVAVPLPAA--DCWYLAEQLRQRI--GQI 533

Query: 209 NISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +        +TIS G+A R    + +  +I+RAD A+Y AK+ GRN+ +  ++  N
Sbjct: 534 D-----KPRMTISIGVAGRSAADDGLGQLIHRADMAMYQAKRQGRNQTILAAEPLN 584


>gi|91777889|ref|YP_553097.1| diguanylate cyclase [Burkholderia xenovorans LB400]
 gi|91690549|gb|ABE33747.1| Putative diguanylate cyclase (GGDEF domain) [Burkholderia
           xenovorans LB400]
          Length = 387

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 87/175 (49%), Gaps = 21/175 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ QL   D L+GL N   F   L         Y   ++ +F DID FK+IND +GH  
Sbjct: 204 ERLKQLGMTDSLTGLANRRYFDERLREEVMRAVRYRMPVACLFIDIDSFKRINDTYGHQT 263

Query: 151 GDKVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           GD+ +A ++    Q V +  T   V R GGEEF AA L     +A  +A  +R  +E   
Sbjct: 264 GDRALAAVAACVRQQVRLGDT---VARYGGEEF-AALLQGDRADALTVAERVRLAVERLA 319

Query: 208 INISSGPSIHITISAGIAER-CHKEPIS------TIIYRADQALYVAKKSGRNRV 255
           +    G  I +T+S G+A R     P         II  AD+A+Y AK++GRNR+
Sbjct: 320 LQDDHGERIALTVSIGVAARMVSGTPTEAAMLGGAIIEEADRAMYQAKRNGRNRI 374


>gi|163848137|ref|YP_001636181.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222526038|ref|YP_002570509.1| diguanylate cyclase with GAF sensor [Chloroflexus sp. Y-400-fl]
 gi|163669426|gb|ABY35792.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222449917|gb|ACM54183.1| diguanylate cyclase with GAF sensor [Chloroflexus sp. Y-400-fl]
          Length = 589

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 88/168 (52%), Gaps = 12/168 (7%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F+  L         Y+  +SI   D+D+FKQIND FGH  GD V+  ++
Sbjct: 421 DNLTGLANRRHFLQVLHQEMERNRRYHTPVSIAMIDVDHFKQINDTFGHIAGDYVLREIA 480

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +          + R GGEEF      ++ ++A      LR ++  + I I  G  I+ T
Sbjct: 481 RRCRQQLRDVDVLARYGGEEFGLILPETTYEQALKATERLRTVLATTPIMI-DGRQINPT 539

Query: 220 ISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           IS G+A      + +P S++I  AD+ALY+AK+ GRNRV    ++ N+
Sbjct: 540 ISIGVASFHPTVYPDP-SSLIADADRALYLAKQQGRNRVCGVQELTND 586


>gi|291282626|ref|YP_003499444.1| Diguanylate cyclase (GGDEF) domain protein [Escherichia coli O55:H7
           str. CB9615]
 gi|290762499|gb|ADD56460.1| Diguanylate cyclase (GGDEF) domain protein [Escherichia coli O55:H7
           str. CB9615]
 gi|320658904|gb|EFX26534.1| Diguanylate cyclase (GGDEF) domain protein [Escherichia coli O55:H7
           str. USDA 5905]
          Length = 472

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 8/156 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424

Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRN 253
           G+       R   +  + ++  AD  LY +KK GRN
Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRN 460


>gi|209551481|ref|YP_002283398.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537237|gb|ACI57172.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 537

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 10/164 (6%)

Query: 104 SRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           ++ D L+GL N        SA ++     +  +S+V FD+D+FK+IND  GH  GD V+ 
Sbjct: 351 AQTDLLTGLYNRRGFEFAASALLTQAEHGSRWISVVLFDLDHFKKINDINGHDAGDAVLR 410

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++      F +   + R GGEEF A    S+  +AAI+A  +R  IE ++I + SG  +
Sbjct: 411 HVAGVARQNFRSFDLLVRHGGEEFLALLPDSTPDDAAIVAERVRLAIEAAEIPLESGEVL 470

Query: 217 HITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVC 257
            +T S G A R ++        ++ RAD +LY AK SGRN VV 
Sbjct: 471 KVTASFGCAGRANEAANRNFEDLVKRADLSLYAAKASGRNCVVS 514


>gi|158424140|ref|YP_001525432.1| hypothetical protein AZC_2516 [Azorhizobium caulinodans ORS 571]
 gi|158331029|dbj|BAF88514.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
          Length = 365

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 7/153 (4%)

Query: 107 DCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+G+ N      +L   G+ + + +++  D+DYFK +ND +GH  GD+V+  + D L 
Sbjct: 215 DPLTGIANRRGIERALEIQGASSRQWALILLDMDYFKTVNDQWGHVFGDRVLQNVVDALR 274

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
            V      +GR GG+EF   +   S  EA  LA  LR+ +     + S G    +TISAG
Sbjct: 275 RVLREGDVIGRWGGDEFLVVSADLSAPEAEALAEKLRQAVAVLPDDESGG----VTISAG 330

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +A       ++  +   D ALY +K+ GRNRVV
Sbjct: 331 VALWDGDGGLAEALRLVDAALYRSKQMGRNRVV 363


>gi|157145814|ref|YP_001453133.1| hypothetical protein CKO_01565 [Citrobacter koseri ATCC BAA-895]
 gi|157083019|gb|ABV12697.1| hypothetical protein CKO_01565 [Citrobacter koseri ATCC BAA-895]
          Length = 303

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 84/158 (53%), Gaps = 6/158 (3%)

Query: 104 SRIDCLSGLLNHSAFISS-----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S     + +    L ++ FDID FK +NDN+GH VGD V+  L
Sbjct: 136 SNMDILTGLPGRRVLDESFDRQLIDAQPLNLYLLLFDIDRFKLVNDNYGHLVGDSVLRTL 195

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L V         R GGEEF       ++++A      + +++ ++ IN   G  + I
Sbjct: 196 ASNLSVWTRYDETPYRYGGEEFVIIIRTKTDEQACRAGLRICQLVADNPINYPDG-ELSI 254

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T++AGI +    EP+  +I RAD+A+Y  K++GRNR +
Sbjct: 255 TVTAGITQAQQGEPLDVVIGRADRAMYRGKQTGRNRCM 292


>gi|104779395|ref|YP_605893.1| diguanylate cyclase [Pseudomonas entomophila L48]
 gi|95108382|emb|CAK13076.1| putative diguanylate cyclase (GGDEF domain protein) [Pseudomonas
           entomophila L48]
          Length = 661

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 83/161 (51%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG----SYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q + ID L+GL N +A+   +      + E    L++   D+D+FK+IND +GH  GDKV
Sbjct: 499 QKAMIDPLTGLPNRAAWSERVEHEVLDWQENGGHLAMAILDLDHFKRINDGYGHLAGDKV 558

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++DQL        F+ R GGEEF      +S   A  +A  LR  IE    +   G 
Sbjct: 559 LKIVADQLRKRLRGRDFIARFGGEEFVLLLPQTSPPAAVQVAETLRAAIEACPFHF-KGE 617

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT S GI+     E    ++ RAD ALY AK  GRNR+
Sbjct: 618 RVVITASIGISAFRSGERGDQVLKRADDALYRAKDKGRNRI 658


>gi|307822955|ref|ZP_07653185.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacter tundripaludum SV96]
 gi|307735730|gb|EFO06577.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacter tundripaludum SV96]
          Length = 617

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 88/174 (50%), Gaps = 13/174 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL  +  R+  ++  D L+GL N    ++ L          N+ LS++  D+DYFK +ND
Sbjct: 443 ELAAANRRLKSMANTDVLTGLPNRRYALNRLEQEAATALRSNQPLSVLMLDLDYFKSVND 502

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD+V+   ++ +     T     RLGGEEF   A  +    A +LA  +R  IE
Sbjct: 503 TLGHDVGDQVLIHAANLMRTTARTNDITCRLGGEEFLIIAPNTDGSTALLLAERIRNSIE 562

Query: 205 NSQINISSGPSIH--ITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255
            +Q     G ++   +T+S G+A     +P    ++ RAD ALY+ K+  RN V
Sbjct: 563 RNQ---PKGLALRHPVTVSIGVAGAMGAKPSWKELMKRADDALYLVKQGKRNGV 613


>gi|262403038|ref|ZP_06079598.1| GGDEF family protein [Vibrio sp. RC586]
 gi|262350537|gb|EEY99670.1| GGDEF family protein [Vibrio sp. RC586]
          Length = 338

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 91/174 (52%), Gaps = 8/174 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQIND 144
           S LKE      ++ + +  D LSGL N  AF     +L      +S++  DID+FK +ND
Sbjct: 166 SRLKEQLA---KVQKDALFDSLSGLYNRRAFDDDMFTLSHAGNPVSLIMLDIDHFKALND 222

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD++I  ++ +L  +    +   R GGEEFA  A   S + A   A  +R+ IE
Sbjct: 223 TYGHLFGDQIIRAIAKRLQSLCRDGVTAYRYGGEEFAIIAPNKSLRIARQFAESVRRSIE 282

Query: 205 NSQI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              + +  SG S+  IT S G+ E    E +  +I RAD  LY AK  GRNRV+
Sbjct: 283 KLNVKDRRSGQSVGSITASFGVVENIQGESLEAMIGRADGLLYEAKNLGRNRVM 336


>gi|315127743|ref|YP_004069746.1| hypothetical protein PSM_A2681 [Pseudoalteromonas sp. SM9913]
 gi|315016257|gb|ADT69595.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 362

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 84/169 (49%), Gaps = 13/169 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFF--DIDYFKQINDNFGHPVG 151
            I  L+  D L+GL N   F  +L      S   K +   F  DID+FK+IND +GH VG
Sbjct: 188 EIQHLAETDKLTGLYNRQKFDYALSQVITSSKETKTTNCLFICDIDHFKKINDAYGHLVG 247

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DKV+A  +  +         + R GGEEF      +S   A   AN L+  I    +   
Sbjct: 248 DKVLAEFAKLIKSNMPNHSLIARWGGEEFTIILPNTSLTNALTQANALKDYISTHPV--- 304

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              +I +TIS G+A     + + +++ RAD ALY AK +GRN V  FSD
Sbjct: 305 --ANIQLTISIGVATISSDDSVISVLERADSALYEAKNNGRNSVY-FSD 350


>gi|269968332|ref|ZP_06182352.1| GGDEF family protein [Vibrio alginolyticus 40B]
 gi|269827050|gb|EEZ81364.1| GGDEF family protein [Vibrio alginolyticus 40B]
          Length = 480

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 11/172 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFG 147
           ++L I+  ++ +++  D L+ L N    I  L   N     L+++ FDID FK IND +G
Sbjct: 297 RQLTIANQQLLEMTLTDSLTKLYNRRHLIEQLALLNHLKRNLTVMVFDIDDFKSINDRYG 356

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+ I  +++    +    M + R+GGEEFA      SE+EA   AN L K + +  
Sbjct: 357 HLAGDRAIVAIAEAAKSMTDDRMTLARIGGEEFALVTSSLSEREALNFANMLCKAVYDQP 416

Query: 208 INISSGPSIHITISAGIAERCHKEPISTII---YRADQALYVAKKSGRNRVV 256
           + I  G +IH++IS G    C   P  T I     AD+ +Y  K  G+NR V
Sbjct: 417 V-ILGGQAIHLSISLG----CAYYPEFTHIVSLQDADELMYQGKSEGKNRAV 463


>gi|212634782|ref|YP_002311307.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212556266|gb|ACJ28720.1| GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 413

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 14/167 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKL----------SIVFFDIDYFKQINDNFGH 148
           ++ + + +D L+ + N   F +    Y EKL          S+   DID+FK++ND +GH
Sbjct: 248 KLWEQANLDYLTNVFNRRYFFNL---YEEKLPTITRNQGTLSLGLMDIDFFKKVNDGYGH 304

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+V+   + +L   F     V R GGEEF     G S +++  L +  R  +E++ +
Sbjct: 305 DVGDEVLVEFAKRLKHSFSQHFTVARFGGEEFVVGFKGLSVEKSFALLDRFRMQMESTPV 364

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             + G  + IT+S G+    H E +  ++ RAD ALY AK+ GRN V
Sbjct: 365 MTTKG-ELTITVSIGVTNFNHDENVDGMLQRADVALYEAKEGGRNLV 410


>gi|119490634|ref|ZP_01623039.1| GGDEF/response regulator receiver domain protein [Lyngbya sp. PCC
           8106]
 gi|119453799|gb|EAW34956.1| GGDEF/response regulator receiver domain protein [Lyngbya sp. PCC
           8106]
          Length = 329

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 84/162 (51%), Gaps = 13/162 (8%)

Query: 107 DCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N    +S          +YN   SI+  DID+FK++ND +GH VGD+V+  ++
Sbjct: 148 DPLTGIFNRRHLMSISEIEYQKAVNYNRLFSIIMLDIDHFKKVNDTYGHIVGDQVLKRMT 207

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-----NISSGP 214
            ++  +       GR GGEEFA    G+  + A  +A  LR+ I +  I     N SS  
Sbjct: 208 QEVQNLLREGDVCGRFGGEEFAIILPGADLKIALKIAERLRQAIADFYIPIYDSNSSSNL 267

Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I ITIS G+       + +  +  RAD ALY AK  GRN+V
Sbjct: 268 KIKITISLGVTTYHIDDDKLDKMWRRADDALYQAKAKGRNQV 309


>gi|327189541|gb|EGE56694.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 384

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 10/165 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           S N++++L+  D L+G LN        S+LGS  + +S++  DID+FKQ+ND  GH  GD
Sbjct: 215 SRNQLTELAHHDPLTGALNRGGLAQHASALGS--QPISLLIMDIDHFKQLNDRHGHAAGD 272

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +++   +     +      + R GG+EF A     S ++A  +A  +R  +E + + +  
Sbjct: 273 EILRLFARVSRGIMRPQDLLARQGGDEFLAVLKNLSREDAMAIAERIR--LEFAAV-VMQ 329

Query: 213 GPSIHI--TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            P + +  T+S G+A R       +++++AD+ALY +K+ GRNRV
Sbjct: 330 RPDLAVFPTLSIGVATRISGGDFESLMHKADEALYRSKREGRNRV 374


>gi|261212979|ref|ZP_05927263.1| sensory box/GGDEF family protein [Vibrio sp. RC341]
 gi|260838044|gb|EEX64721.1| sensory box/GGDEF family protein [Vibrio sp. RC341]
          Length = 308

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 88/178 (49%), Gaps = 21/178 (11%)

Query: 99  RISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           ++ QL+  D L+ L N         SAF  +  S  + LS +  DID FK IND FGH  
Sbjct: 139 QLYQLANTDSLTQLCNRRKLWADFRSAFTRAKNS-KQPLSCISIDIDNFKLINDQFGHDK 197

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+ FL+     V     F GR+GGEEF      +  + A  LA  +R+         
Sbjct: 198 GDEVLCFLARLFHHVISEHHFCGRVGGEEFIIVLENTDVETAFALAEQIRQ-------RF 250

Query: 211 SSGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +  P      HI + AG++   H++  I+ I  R+DQALY AK+SGRNR   +    N
Sbjct: 251 AEQPFFDQQEHIYLCAGVSSLHHEDHDIADIYRRSDQALYKAKRSGRNRCCIYRQSTN 308


>gi|317049668|ref|YP_004117316.1| diguanylate cyclase [Pantoea sp. At-9b]
 gi|316951285|gb|ADU70760.1| diguanylate cyclase [Pantoea sp. At-9b]
          Length = 474

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 123/249 (49%), Gaps = 22/249 (8%)

Query: 24  PHTFMIYFSIFFSIFIATVIF----IANIFLFYIGLTPFYGLEYIL----VENLSLVIIS 75
           P   +I+ +I   I I +++     I  I L   G+    G + +L    + ++ L + +
Sbjct: 215 PVPALIWCAIVLPIPITSLVLLITGITEIILVSHGVMNIQGDDALLPISHLTSVRLGVAT 274

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG----SYNEKLSI 131
           ITIS LL  +S   +++L     R+S  +  D L+ LL+ S    +L     S      +
Sbjct: 275 ITISPLLVAVSMDAIRQL---NQRLSLRANFDFLTQLLSRSGLYENLRQEPFSPQRAAGV 331

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           V  D+DYFK INDNFGH  GD V+  ++ ++  V      V R GGEEF       +  +
Sbjct: 332 VMLDVDYFKTINDNFGHDAGDGVLEEIARRIQDVVNNRGLVCRFGGEEFVVVVFDYNHSQ 391

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALY 245
              LA  +R+ +   +  +  G ++ +T S G+A      ER  +  ++ +I  AD+ LY
Sbjct: 392 LYQLAEVIRQSMVREKFWL-QGNTVTVTASLGLALGNAVNEREWQGVVNRLISAADKNLY 450

Query: 246 VAKKSGRNR 254
           ++K++GRN+
Sbjct: 451 LSKRNGRNQ 459


>gi|237730352|ref|ZP_04560833.1| diguanylate cyclase AdrA [Citrobacter sp. 30_2]
 gi|226905891|gb|EEH91809.1| diguanylate cyclase AdrA [Citrobacter sp. 30_2]
          Length = 366

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 89/184 (48%), Gaps = 10/184 (5%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132
           LL  ++S   L  L     R+  +S  D ++G+ N   +         +   +    +++
Sbjct: 181 LLFAWVSYQTLIRLAEHKRRLQVMSTRDGMTGVYNRRHWELLLRNEFDNCRRHQRDATLL 240

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA    G+S   A
Sbjct: 241 IIDIDHFKSINDTWGHDVGDQAIVALTRQLQMTLRGSDVIGRFGGDEFAVIMCGTSASSA 300

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSG 251
               + + + +  +Q+ +S  P + + IS G+A      E     +  AD ALY AK SG
Sbjct: 301 IAAMSRVHERL--TQLRLSCAPQVDLRISVGVAPLTSETEHYREWLKSADMALYKAKNSG 358

Query: 252 RNRV 255
           RNR 
Sbjct: 359 RNRT 362


>gi|330502862|ref|YP_004379731.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328917148|gb|AEB57979.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 308

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 73/129 (56%), Gaps = 1/129 (0%)

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           + LS++  DID+FK INDN GH +GD+V+  ++  L         V R GGEEF     G
Sbjct: 177 QPLSLLMLDIDHFKTINDNHGHALGDEVLKAVAQTLKNQLRNVDMVFRYGGEEFLVILSG 236

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
           +S   AA++   LR  +   Q  + +G  I ++IS G A     E   +++ RAD ALYV
Sbjct: 237 TSRDGAALVGERLRFAVLELQC-LDAGRPIDVSISLGCASLLPGESAESLLRRADNALYV 295

Query: 247 AKKSGRNRV 255
           AK+ GRNR+
Sbjct: 296 AKREGRNRL 304


>gi|284052991|ref|ZP_06383201.1| two-component response regulator [Arthrospira platensis str.
           Paraca]
          Length = 192

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 14/165 (8%)

Query: 103 LSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++ ID L+G+ N        +  I   G + + L     D+D FK IND +GH  GD V+
Sbjct: 30  IAEIDTLTGIENRYKSTEDINRLIRIAGRHKQPLCFAILDLDNFKDINDQYGHDTGDWVL 89

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---SS 212
               + L   F     VGR GGEEFA A  G+S+Q+A    N L+K+++  ++ +     
Sbjct: 90  HRFGEVLKKAFRQEDIVGRWGGEEFAVAMYGTSKQDA---MNRLQKVLDKWRLEVLVPED 146

Query: 213 GPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
             +  +T S G+A+         ++YR AD  LY AK++GRN+++
Sbjct: 147 NIAFSVTFSGGVAQYPEDGHDLQLLYRKADATLYEAKQAGRNQIM 191


>gi|152998364|ref|YP_001343199.1| sensor diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150839288|gb|ABR73264.1| 7TM domain sensor diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 569

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 114/227 (50%), Gaps = 14/227 (6%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVII--SITISLLLGYISGSILKELFISYNRI 100
           IF     LFY G   F    YI    + + I+  ++ +SL++ +   S L+ +  + + +
Sbjct: 346 IFSTMAVLFYKGKAEF---TYINSHGVGIGIMLEALVLSLIIAHRIRS-LETMKAAQDEL 401

Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
             L+  D L+ L N   F       +       +  +I   DID+FK++ND  GH  GDK
Sbjct: 402 KLLASTDSLTQLFNRRHFNTEAEYLLQKAKQLQQPAAIAMLDIDHFKKVNDTHGHSFGDK 461

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           VI  +++ L+        + R GGEEF      +S  EA  L   +R+ +  + + +++ 
Sbjct: 462 VIIQVANTLMAECRQQDVLARYGGEEFIILMTNTSIGEAFNLVERIRQELAKATVILNNN 521

Query: 214 PSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFS 259
            S++ TISAGIA    + PI    I +AD+ALY AK++GRN+ + + 
Sbjct: 522 QSVNFTISAGIAAIDLENPILKNSINQADKALYQAKENGRNQSLVYK 568


>gi|87120354|ref|ZP_01076249.1| hypothetical protein MED121_09183 [Marinomonas sp. MED121]
 gi|86164457|gb|EAQ65727.1| hypothetical protein MED121_09183 [Marinomonas sp. MED121]
          Length = 505

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 88/172 (51%), Gaps = 21/172 (12%)

Query: 99  RISQLSRIDCLSGLLNHSAFISS------LGSYNEKLSIV-FFDIDYFKQINDNFGHPVG 151
           +I+Q +  D ++ L N SA+  S      L   ++K  I+   DID+FK++ND +GH  G
Sbjct: 341 KIAQAT-TDTVTNLPNRSAYQDSIMPMCLLAQKSKKPLILGVLDIDHFKKVNDTWGHLAG 399

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFA------AAALGSSEQEAAILANDLRKIIEN 205
           DKV+  L  QL  V      + R GGEEF           G S+ EA  LA      +E 
Sbjct: 400 DKVLNLLPRQLKNVMSEKDLLFRYGGEEFVFLLPNCNLETGQSKAEAIRLA------VEK 453

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              N++  P + ITIS GIA+  + E    +  RAD+ LY AK  GRNRVV 
Sbjct: 454 MPFNVNGEP-VPITISIGIAQLANNEKHEELFDRADKYLYQAKSDGRNRVVS 504


>gi|261416541|ref|YP_003250224.1| diguanylate cyclase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261372997|gb|ACX75742.1| diguanylate cyclase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302326891|gb|ADL26092.1| diguanylate cyclase (GGDEF) domain protein [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 605

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 15/174 (8%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS---------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
             L+  D L+GL+NH +   +L +         YN  + ++  DID+FK++ND +GHPVG
Sbjct: 428 KDLATRDGLTGLMNHRSLQEALRTEKVRADRKKYN--IGVLMMDIDHFKRVNDTYGHPVG 485

Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D+VI  ++  +       +  V R GGEEF  A + ++ +     A  +RK +   + N+
Sbjct: 486 DEVIKGIATAISGEIRKEIDVVARYGGEEFVVALVDTTPEGMIETAERIRKAVGKLEFNV 545

Query: 211 SSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
                + +T+S G  + E    + +   +  ADQALY AK  GRN+VV F  +E
Sbjct: 546 HLTDPLRVTVSIGAFLVEPEFSD-MKKAVNNADQALYKAKDGGRNQVVRFETVE 598


>gi|228911251|ref|ZP_04075056.1| GGDEF domain protein [Bacillus thuringiensis IBL 200]
 gi|228848427|gb|EEM93276.1| GGDEF domain protein [Bacillus thuringiensis IBL 200]
          Length = 352

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 18/204 (8%)

Query: 65  LVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHSAF 118
           L++++++V + +  S++ GYI+      +L+  ELF     + Q + +D L+GL N   F
Sbjct: 150 LIKDINIVGLYLISSIITGYITFISANYVLQSNELF---QTMKQYATVDALTGLGNVRQF 206

Query: 119 -------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  IS+    N+ L ++  DID+FK +ND +GHP GD+V+  +   L      P  
Sbjct: 207 DLEMNRHISNKNMKNDSLCLLLIDIDHFKYVNDTYGHPAGDEVLKQVGCILRETSQFPDL 266

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
             R GGEEFA             +   +R  +E+    +  G  I IT+S G++E  ++ 
Sbjct: 267 AFRKGGEEFALLIPNKGLAYGIRMGEQIRIAVESHSFQLLDGTKIKITVSVGVSE--YEG 324

Query: 232 PISTIIYRADQALYVAKKSGRNRV 255
                I  AD ALY +K++GRN+V
Sbjct: 325 SSEQFIQAADDALYYSKRNGRNKV 348


>gi|182627106|ref|ZP_02954825.1| GGDEF/HD domain protein [Clostridium perfringens D str. JGS1721]
 gi|177907516|gb|EDT70171.1| GGDEF/HD domain protein [Clostridium perfringens D str. JGS1721]
          Length = 563

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 9/161 (5%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ NH  F   L          NEKLS++F DIDYFK  ND +GH  GD+ +  + 
Sbjct: 196 DGLTGVYNHRYFYDKLREKMHISEVENEKLSLIFMDIDYFKHYNDLYGHQKGDEALKKIG 255

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHI 218
             L  +      V R GGEEFA     +SE+EA  +A  +R  +E +      + P+ + 
Sbjct: 256 KLLKNIARENDLVARYGGEEFAIILPNTSEEEATKIAERIRNKVEKTYFEGQENQPNANF 315

Query: 219 TISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCF 258
           T+S GIA    K      + + AD ALY AK   +NRV  +
Sbjct: 316 TVSVGIAVFPDKAKSELDLVKCADDALYRAKFFHKNRVETY 356


>gi|332529185|ref|ZP_08405149.1| Cyclic diguanylate phosphodiesterase domain protein [Hylemonella
           gracilis ATCC 19624]
 gi|332041408|gb|EGI77770.1| Cyclic diguanylate phosphodiesterase domain protein [Hylemonella
           gracilis ATCC 19624]
          Length = 623

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 92/184 (50%), Gaps = 12/184 (6%)

Query: 83  GYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS--------IV 132
           GY+ GS +   E       + + +  D L+GL N   F+ SL S  E++         ++
Sbjct: 438 GYLVGSRIDITERKQLEAELREQASTDALTGLANRRHFMQSLESELERVRRRNTLRACVL 497

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK++ND +GH  GD ++   +D L          GRLGGEEFA    GS  ++A
Sbjct: 498 MLDLDHFKRVNDQYGHAAGDSLLRHFADLLRDELRGTDTAGRLGGEEFAVILPGSGMEDA 557

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSG 251
              A  L + +    +   +   IH T+S G+A     +  +   + RAD ALY AK++G
Sbjct: 558 RTWAQRLCEAVSARPLAWGA-RHIHATVSVGVAILSPDDGAADAALSRADAALYRAKEAG 616

Query: 252 RNRV 255
           RNRV
Sbjct: 617 RNRV 620


>gi|261212328|ref|ZP_05926613.1| amino acid ABC transporter amino acid-binding protein [Vibrio sp.
           RC341]
 gi|260838259|gb|EEX64915.1| amino acid ABC transporter amino acid-binding protein [Vibrio sp.
           RC341]
          Length = 459

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 100/190 (52%), Gaps = 4/190 (2%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128
           S+VI ++  +L L        ++L  +  +++ L++ D L+G+ N   F S L    ++ 
Sbjct: 266 SIVIAALFYTLQLRRTVRLRTQQLENANQKLTHLAQTDSLTGIHNRHFFFSQLRKTQQES 325

Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             L+++ FDID FK IND +GH +GD+ I  ++  +  +    M   R+GGEEFA     
Sbjct: 326 GSLTLMVFDIDDFKAINDTYGHGIGDQAICLVAASVREILPPEMQFARIGGEEFAILIRA 385

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
            S  E+  LA  +R+ I   ++ +S+   + +T+S G A     E   T ++ AD  +Y 
Sbjct: 386 KSAAESLQLAERIRQRIAEKKLVVSTTEFVSLTVSIGCAFYPSPENPFT-LHTADSLMYE 444

Query: 247 AKKSGRNRVV 256
            K  G+N+VV
Sbjct: 445 GKHKGKNQVV 454


>gi|168206786|ref|ZP_02632791.1| GGDEF/HD domain protein [Clostridium perfringens E str. JGS1987]
 gi|168217696|ref|ZP_02643321.1| GGDEF/HD domain protein [Clostridium perfringens NCTC 8239]
 gi|170661812|gb|EDT14495.1| GGDEF/HD domain protein [Clostridium perfringens E str. JGS1987]
 gi|182380275|gb|EDT77754.1| GGDEF/HD domain protein [Clostridium perfringens NCTC 8239]
          Length = 563

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 83/163 (50%), Gaps = 13/163 (7%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ NH  F   L          NEKLS++F DIDYFK  ND +GH  GD+ +  + 
Sbjct: 196 DGLTGVYNHRYFYDKLREKMHISEVENEKLSLIFMDIDYFKHYNDLYGHQKGDEALKKIG 255

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHI 218
             L  +      V R GGEEFA     +SE+EA  +A  +R  +E +      + P+ + 
Sbjct: 256 KLLKNIARENDLVARYGGEEFAIILPNTSEEEATKIAERIRNKVEKTYFEGQENQPNANF 315

Query: 219 TISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           T+S GIA   ++   E    ++  AD ALY AK   +NRV  +
Sbjct: 316 TVSVGIAVFPDKAKSEL--ELVKCADDALYRAKFFHKNRVETY 356


>gi|183220482|ref|YP_001838478.1| hypothetical protein LEPBI_I1081 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910593|ref|YP_001962148.1| GGDEF domain-containing protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775269|gb|ABZ93570.1| GGDEF domain protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167778904|gb|ABZ97202.1| Hypothetical protein with GGDEF domain; putative membrane protein
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 288

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 122/242 (50%), Gaps = 28/242 (11%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS-LLLG---YISGSIL 90
           ++ F+ATV+F A  FL Y  + P      IL+  +   ++SI IS +LLG   +I   I+
Sbjct: 46  YNAFLATVLFSAMGFLVYFEILPSVN---ILMPTVKPTLMSIFISSILLGGSAFIVNQIV 102

Query: 91  KELFISYNRISQ----LSRIDCLSGLLNHSAFIS-----------SLGSYNEKLSIVFFD 135
            +LF S   ++Q    ++  D L+G+ N  +F S           S+G Y   ++ + FD
Sbjct: 103 SKLFSSLTDVNQKLLAIAMTDPLTGISNRRSFFSNLEIELARKQRSVGPY--PIAFLLFD 160

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D FK IND +GH  GD+V+   +  L        F  R GGEEF      +    A ++
Sbjct: 161 LDLFKSINDTYGHEFGDQVLIEFATVLKTSLRKQDFPARWGGEEFLVLLPNTDLDGAIVV 220

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRN 253
           A  +R    +     +    I  + S GI+  C+++ I+   +I +ADQ LY AK++GRN
Sbjct: 221 AEKIRTSFHSLSF-YAKDKRIQCSTSVGISV-CNEQGINPEVVINQADQYLYEAKRNGRN 278

Query: 254 RV 255
           ++
Sbjct: 279 QI 280


>gi|241204721|ref|YP_002975817.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858611|gb|ACS56278.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 391

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 87/164 (53%), Gaps = 2/164 (1%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           ++ +L+  D L+G+ N   F +SL  S     + +  DID+FK++ND  GH  GD V+  
Sbjct: 212 KLIRLANTDMLTGIPNRQHFFNSLPKSLGSGDAFILIDIDFFKRVNDMHGHDKGDVVLIN 271

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           ++  + +        GRLGGEEF+    G +   A  LA  +R+ + N+   +  G  + 
Sbjct: 272 VARTIALSVPPSCVFGRLGGEEFSLFFRGQTAASAFALAERIREAV-NAVSLVLEGNQVT 330

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            ++SAG+A          I  RADQALY+AK  GRNRV  FS +
Sbjct: 331 PSVSAGVALWEAGLTEQDIQKRADQALYIAKNKGRNRVELFSSV 374


>gi|163783658|ref|ZP_02178646.1| hypothetical protein HG1285_12742 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881063|gb|EDP74579.1| hypothetical protein HG1285_12742 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 345

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 85/166 (51%), Gaps = 9/166 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ + + ID L+GL N  +F  +L  +           S++  D+D FKQIND +GH  G
Sbjct: 180 RVKEEANIDPLTGLRNRRSFERALSEFFRDFKKFGYPFSVIMIDLDNFKQINDTYGHLAG 239

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DKV+  + + L           R GGEEF     G + +EA ++A  LRK+I N  +   
Sbjct: 240 DKVLKEIGNILRNYLRAKDVPARTGGEEFTIILPGITREEALMVAERLRKVIANYTVE-H 298

Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
               I+ T S G+AE   + E    ++  AD+ LY AK+ G+N VV
Sbjct: 299 EDKKINPTASFGVAEVNEQVETPEDLLRLADENLYKAKRRGKNTVV 344


>gi|110800454|ref|YP_696245.1| GGDEF/HD domain-containing protein [Clostridium perfringens ATCC
           13124]
 gi|110675101|gb|ABG84088.1| GGDEF/HD domain protein [Clostridium perfringens ATCC 13124]
          Length = 563

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 83/163 (50%), Gaps = 13/163 (7%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ NH  F   L          NEKLS++F DIDYFK  ND +GH  GD+ +  + 
Sbjct: 196 DGLTGVYNHRYFYDKLREKMHISEVENEKLSLIFMDIDYFKHYNDLYGHQKGDEALKKIG 255

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHI 218
             L  +      V R GGEEFA     +SE+EA  +A  +R  +E +      + P+ + 
Sbjct: 256 KLLKNIARENDLVARYGGEEFAIILPNTSEEEATKIAERIRNKVEKTYFEGQENQPNANF 315

Query: 219 TISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           T+S GIA   ++   E    ++  AD ALY AK   +NRV  +
Sbjct: 316 TVSVGIAVFPDKAKSEL--ELVKCADDALYRAKFFHKNRVETY 356


>gi|296534519|ref|ZP_06896939.1| diguanylate cyclase [Roseomonas cervicalis ATCC 49957]
 gi|296265156|gb|EFH11361.1| diguanylate cyclase [Roseomonas cervicalis ATCC 49957]
          Length = 370

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 92/188 (48%), Gaps = 20/188 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
            L  +  R+ +++  D L+GL N   F  +L           + LS++  D D FK+ ND
Sbjct: 175 RLLEALERMEEMATTDALTGLANRRRFEEALAVEWRRCAREGQPLSLLVLDADRFKRFND 234

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GHP GD+ +  ++D L  V   P  V  R GGEEFA     +    AA+LA  +R  +
Sbjct: 235 RYGHPAGDECLRLVADALASVARRPGDVAARHGGEEFALLMPKTDAAGAALLAERVRAAV 294

Query: 204 ENS-QINISSGPSIHITISAGIA------ERCHKEP-----ISTIIYRADQALYVAKKSG 251
            ++ + ++ + PS  +T+S G+A      E     P        ++  AD+ALY AK  G
Sbjct: 295 ADARRPHLGNTPSGIVTVSIGVATTRPMPETGPAGPGILSGADALLSAADRALYAAKMGG 354

Query: 252 RNRVVCFS 259
           RNR+   S
Sbjct: 355 RNRIRVAS 362


>gi|158521137|ref|YP_001529007.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3]
 gi|158509963|gb|ABW66930.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3]
          Length = 357

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 103/200 (51%), Gaps = 22/200 (11%)

Query: 78  ISLLLGYISGSIL--KELFISY---------NRISQLSRIDCLSGLLNHSAFISSLG--- 123
           +++ L  I G+IL    L++SY          RI +++  D L+ + N       L    
Sbjct: 154 VTVKLEIIRGAILVLSLLWVSYMANYIANLRRRIKEMASFDALTEVYNRREIFEILDREK 213

Query: 124 SYNEKLSIVF----FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
           S++++ +I F     D+D FK++ND +GH  GD+V+   +  L     T  +VGR GGEE
Sbjct: 214 SFSDRSAIPFSLCILDLDDFKEVNDTYGHQAGDEVLKAFARALRENVRTEDYVGRYGGEE 273

Query: 180 FAAAALGSSEQEAAILAND-LRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTII 237
           F    +    ++ ++   D L K+ E      I+ G  + IT S G++     E I  +I
Sbjct: 274 FLVVFVNFECRDNSVTCVDRLLKVTERLTFPGIADG--LKITTSIGVSAYRPSETIDAVI 331

Query: 238 YRADQALYVAKKSGRNRVVC 257
            RADQALY AK +G+NR+VC
Sbjct: 332 ARADQALYEAKAAGKNRIVC 351


>gi|148548490|ref|YP_001268592.1| diguanylate cyclase [Pseudomonas putida F1]
 gi|148512548|gb|ABQ79408.1| diguanylate cyclase [Pseudomonas putida F1]
          Length = 523

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 14/175 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIND 144
           ++L+E     NR +Q    D L+GL N  +    +S L + N + + +  DID+FK+IND
Sbjct: 355 NLLQERIGRLNRDAQ---TDPLTGLGNRRSLEISLSLLEAENREFAAIALDIDHFKRIND 411

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH VGD+V+  L++ +         + R GGEEF     G++   AA +A  LR  ++
Sbjct: 412 SHGHEVGDQVLRQLAELMRRCCREGDLLCRTGGEEFLILLPGATLNVAAAVAERLRVTVQ 471

Query: 205 NSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  +     P   +TIS G+       H EP++  +  AD+ALY AK+ GRNRV 
Sbjct: 472 DMPVE----PVGAVTISLGVTHWDGETHGEPMNA-LGEADRALYRAKQEGRNRVA 521


>gi|46202079|ref|ZP_00053801.2| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 440

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 88/182 (48%), Gaps = 27/182 (14%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           E  +    + QL+  D L+   N   F+ S G+       Y   +S++  D+D+FK IND
Sbjct: 264 ERAVVQKELIQLATTDFLTEACNRRHFMQSTGAEIQRAGRYGRPMSLLMIDLDHFKHIND 323

Query: 145 NFGHPVGDKVIA--------FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
             GH  GD+ +          L DQ ++        GR+GGEEFA A   ++   A ++A
Sbjct: 324 ERGHAAGDEALKAFVVMARDLLRDQDII--------GRMGGEEFAIALPETAMNPALVVA 375

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRN 253
             LR  +   Q+ +  G  I ++ S G+AE C     E +   + RAD ALY AK  GRN
Sbjct: 376 ERLRIRLAGLQVPVGGGEPIKLSASFGVAE-CKVGAGEGLEACLSRADAALYRAKALGRN 434

Query: 254 RV 255
           RV
Sbjct: 435 RV 436


>gi|288554054|ref|YP_003425989.1| GGDEF domain-containing protein [Bacillus pseudofirmus OF4]
 gi|288545214|gb|ADC49097.1| GGDEF domain protein [Bacillus pseudofirmus OF4]
          Length = 364

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 3/161 (1%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS--IVFFDIDYFKQINDNFGHPVGDKVI 155
           +++   +  D L+GL N   F   +       S  I   DID+FK IND+ GHP GDKV+
Sbjct: 192 DKLKHYADHDPLTGLYNVRKFSEMIREKKSAGSSYIAMLDIDHFKSINDSNGHPSGDKVL 251

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L+  L +     +   R GGEEF      SS ++A ++A+ +R+ +E+       G  
Sbjct: 252 KDLATILTLYSSNHLLCARYGGEEFILCIEASSIRDAYVVADLIREKVESFPFQNIEGEK 311

Query: 216 I-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           I  +TIS GIA     + ++  I  AD+ LY AK  GRNRV
Sbjct: 312 IGRVTISVGIARLEAPDQLNEAIEAADRQLYTAKTEGRNRV 352


>gi|283785239|ref|YP_003365104.1| signal transduction protein [Citrobacter rodentium ICC168]
 gi|282948693|emb|CBG88285.1| putative signal transduction protein [Citrobacter rodentium ICC168]
          Length = 484

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 14/169 (8%)

Query: 103 LSRIDCLSGL---LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           L+++   SGL   L   A+ +S     + ++++  DIDYFK INDN+GH  GD+V+   +
Sbjct: 313 LTQVYSRSGLYEALKRQAYPAS-----QNMTVMLLDIDYFKSINDNYGHECGDRVLCVFA 367

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +  + G    V R+GGEEFA     S  +E   LA  +RK +     +     SI++T
Sbjct: 368 RHIQRIVGDRGLVARMGGEEFAVVLPTSHPEEGMQLAETIRKAVALQPFDWQQ-QSIYLT 426

Query: 220 ISAG-----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +S G     IA +   +  + ++  AD+ LY +K  GRNR     D  N
Sbjct: 427 VSIGVGNGKIAAQTVTDIFNKLMVEADECLYRSKNEGRNRTSARMDRGN 475


>gi|254520084|ref|ZP_05132140.1| GGDEF/HD domain-containing protein [Clostridium sp. 7_2_43FAA]
 gi|226913833|gb|EEH99034.1| GGDEF/HD domain-containing protein [Clostridium sp. 7_2_43FAA]
          Length = 566

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 85/173 (49%), Gaps = 9/173 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
           N++ +L   D L+G+ NH  F  +L           E  S++F DIDYFK  ND +GH  
Sbjct: 189 NKLEELVNKDGLTGVYNHRYFHDALKEKIILSEKDKEHTSMIFVDIDYFKHYNDLYGHQK 248

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-N 209
           GD+V+  + D L           R GGEEFA     + E+EA  LA+ LR  IE ++   
Sbjct: 249 GDEVLRSIGDILKNNIREGDIAARYGGEEFAVILPNTKEEEALSLADKLRSTIEKTKFYG 308

Query: 210 ISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDI 261
             + P   +T S G++    K      +I  AD ALY AK   +NRV  ++ I
Sbjct: 309 EENQPRGVLTASMGVSVYPDKAKSDVELIKSADDALYRAKFFNKNRVETYTSI 361


>gi|103487422|ref|YP_616983.1| diguanylate cyclase [Sphingopyxis alaskensis RB2256]
 gi|98977499|gb|ABF53650.1| diguanylate cyclase [Sphingopyxis alaskensis RB2256]
          Length = 391

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 79/156 (50%), Gaps = 5/156 (3%)

Query: 104 SRIDCLSGLLNHSAFISSLG----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           S  D LS +LN   F    G     Y E   ++  D+D FK IND+FGH  GD VIA  +
Sbjct: 221 SETDPLSSVLNRRGFEQHAGIALLRYGETAVLIAADLDDFKTINDSFGHAAGDGVIAHFA 280

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             LV        VGR+GGEEFA     +   +  I A  +R     +++ +  G     T
Sbjct: 281 AMLVDAAPADAIVGRIGGEEFAVLLPDAMLSDGRIYAEAVRTAFAAARLPV-LGVDRGFT 339

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+A+R   + +  ++ RAD ALY AK +GRN+V
Sbjct: 340 ASFGVAQRGPGDSLFDLLRRADAALYRAKAAGRNQV 375


>gi|46201460|ref|ZP_00208110.1| COG3706: Response regulator containing a CheY-like receiver domain
           and a GGDEF domain [Magnetospirillum magnetotacticum
           MS-1]
          Length = 470

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 9/166 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+G+ N    +       S    Y   L+++  DID FK IND +GHP GD
Sbjct: 300 MRKLATTDMLTGVANRRQLVETGLHEFSRARRYGAHLALLMVDIDRFKAINDTWGHPTGD 359

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + I  L+  +  +      VGR GGEEFA     +    A ++A  LR  ++++   +S 
Sbjct: 360 RAIQALTTAITGIIRDQDKVGRFGGEEFAVILPETEMAGALVIAERLRAAVQDTAKAVSD 419

Query: 213 -GPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
               +  T+S G+A    K+     +I RAD+ LY AK  GRN+VV
Sbjct: 420 CSEMVGFTVSIGVATLDPKDKSFEDLIGRADKMLYAAKDGGRNQVV 465


>gi|291566616|dbj|BAI88888.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 774

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 14/165 (8%)

Query: 103 LSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++ ID L+G+ N        +  I   G + + L     D+D FK IND +GH  GD V+
Sbjct: 612 IAEIDTLTGIENRYKSTEDINRLIRIAGRHKQPLCFAILDLDNFKDINDQYGHDTGDWVL 671

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---SS 212
               + L   F     VGR GGEEFA A  G+S+Q+A    N L+K+++  ++ +     
Sbjct: 672 HRFGEVLKKAFRQEDIVGRWGGEEFAVAMYGTSKQDA---MNRLQKVLDKWRLEVLVPED 728

Query: 213 GPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
             +  +T S G+A+         ++YR AD  LY AK++GRN+++
Sbjct: 729 NIAFSVTFSGGVAQYPEDGHDLQLLYRKADATLYEAKQAGRNQIM 773


>gi|157145747|ref|YP_001453066.1| hypothetical protein CKO_01497 [Citrobacter koseri ATCC BAA-895]
 gi|157082952|gb|ABV12630.1| hypothetical protein CKO_01497 [Citrobacter koseri ATCC BAA-895]
          Length = 367

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 5/162 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +R+  L+  D L+G  N  A    + +  +     +++  D+D+FK+ ND +GHP GD  
Sbjct: 203 SRLDNLAHRDPLTGTANRRAMEKLLHNAMAQQNAFALIMLDVDFFKRYNDAYGHPAGDAC 262

Query: 155 IAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212
           ++ ++D L     +P  V  R GGEEFA     ++ Q+A  +A  ++K +E + I + +S
Sbjct: 263 LSQVADILAQSVRSPEDVAARYGGEEFAVILFDATLQDAERVAARIQKALEAAAIPHPAS 322

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             S  +T+S GIA     +     I  AD ALY AK++GRNR
Sbjct: 323 TVSDSVTVSQGIACSEKGKTAEQTIADADAALYRAKEAGRNR 364


>gi|170724256|ref|YP_001751944.1| diguanylate cyclase [Pseudomonas putida W619]
 gi|169762259|gb|ACA75575.1| diguanylate cyclase [Pseudomonas putida W619]
          Length = 653

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 84/157 (53%), Gaps = 8/157 (5%)

Query: 106 IDCLSGLLNHSAFISS----LGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+GL N +A+       + ++ E    L++   D+D+FK+IND++GH  GDKV+  +
Sbjct: 495 IDPLTGLPNRAAWSEQVEREMQAWQENGGHLAMAILDLDHFKRINDSYGHLAGDKVLKIV 554

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +DQL        F+ R GGEEF      +S   AA +A  LR  IE    +   G  + I
Sbjct: 555 ADQLRKRLRPRDFIARFGGEEFVLLLAQTSPTVAAQVAEVLRAAIEACPFHF-KGERVVI 613

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T S G++     E    ++ RAD ALY AK  GRNRV
Sbjct: 614 TASIGLSAFRSGERDDQVLKRADAALYRAKDLGRNRV 650


>gi|298682175|gb|ADI95243.1| putative diguanilate cyclase [Pseudomonas putida]
          Length = 270

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 14/175 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIND 144
           ++L+E     NR +Q    D L+GL N  +    +S L + N + + +  DID+FK+IND
Sbjct: 102 NLLQERIGRLNRDAQ---TDPLTGLGNRRSLEISLSLLEAENREFAAIALDIDHFKRIND 158

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH VGD+V+  L++ +         + R GGEEF     G++   AA +A  LR  ++
Sbjct: 159 SHGHEVGDQVLRQLAELMRRCCREGDLLCRTGGEEFLILLPGATLNVAAAVAERLRVTVQ 218

Query: 205 NSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  +     P   +TIS G+       H EP++  +  AD+ALY AK+ GRNRV 
Sbjct: 219 DMPVE----PVGAVTISLGVTHWDGETHGEPMNA-LGEADRALYRAKQEGRNRVA 268


>gi|295703132|ref|YP_003596207.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium DSM 319]
 gi|294800791|gb|ADF37857.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium DSM 319]
          Length = 178

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 89/170 (52%), Gaps = 15/170 (8%)

Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD--- 152
           LS  D L+GL N  +    L           E LS + FDIDYFK  ND +GH  GD   
Sbjct: 2   LSMKDGLTGLNNRRSLDKQLEIEWKYARKEKEPLSFLLFDIDYFKAYNDTYGHIQGDECL 61

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INIS 211
           K +A ++  L  VF    FV R GGEEF      +++ EA  +A  +R+ +E    I+ +
Sbjct: 62  KEVANIAKSL--VFDESAFVARYGGEEFGILLPRANQYEAIKMAEAIRQQVEQRAIIHQA 119

Query: 212 SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFS 259
           S     +TIS GI      E I   +I++ ADQALY AK++GRNR+  +S
Sbjct: 120 SDVFKCVTISVGIMTVVPSENIQLISIVHGADQALYEAKRTGRNRISVYS 169


>gi|169342866|ref|ZP_02863897.1| GGDEF/HD domain protein [Clostridium perfringens C str. JGS1495]
 gi|169299123|gb|EDS81195.1| GGDEF/HD domain protein [Clostridium perfringens C str. JGS1495]
          Length = 563

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 9/161 (5%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ NH  F   L          NEKLS++F DIDYFK  ND +GH  GD+ +  + 
Sbjct: 196 DGLTGVYNHRYFYDKLREKMHISEVENEKLSLIFMDIDYFKHYNDLYGHQKGDEALKKIG 255

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHI 218
             L  +      V R GGEEFA     +SE+EA  +A  +R  +E +      + P+ + 
Sbjct: 256 KLLKNIARENDLVARYGGEEFAIILPNTSEEEATKIAERIRNKVEKTYFEGQENQPNANF 315

Query: 219 TISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCF 258
           T+S GIA    K      + + AD ALY AK   +NRV  +
Sbjct: 316 TVSVGIAVFPDKAKSELELVKCADDALYRAKFFHKNRVETY 356


>gi|121594336|ref|YP_986232.1| diguanylate cyclase [Acidovorax sp. JS42]
 gi|120606416|gb|ABM42156.1| diguanylate cyclase [Acidovorax sp. JS42]
          Length = 334

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 88/185 (47%), Gaps = 19/185 (10%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL------------GSYNEKLSIVFFDIDYFK 140
           ++ +Y  +   S  D L+GLLN   F                G    +  +   DID+FK
Sbjct: 141 VYQNYQSLLDYSERDALTGLLNRKTFEEQFSRQTGAPASPGEGEDTVRQWLAVIDIDHFK 200

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND FGH  GD+V+  ++++L   F +   + R GGEEF       +  +A      LR
Sbjct: 201 SVNDRFGHLYGDEVLILVANRLRTQFQSQDSIFRFGGEEFVVLLRSLTLAQARQALERLR 260

Query: 201 KIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++         P I HIT+S G A      P+  I+ RADQALY AK+ GRN+V  + 
Sbjct: 261 AAVQTHVF-----PQIGHITVSIGFAATQQGSPVE-ILGRADQALYYAKEHGRNQVCFYE 314

Query: 260 DIENN 264
           D+ NN
Sbjct: 315 DLVNN 319


>gi|70734177|ref|YP_257817.1| response regulator/GGDEF domain-containing protein [Pseudomonas
           fluorescens Pf-5]
 gi|68348476|gb|AAY96082.1| response regulator/GGDEF domain protein [Pseudomonas fluorescens
           Pf-5]
          Length = 555

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 83/157 (52%), Gaps = 10/157 (6%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +  L           + LS    DID+FK++ND+ GHP+GD+VI  L+
Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRARREGKPLSFAMLDIDHFKRVNDSHGHPMGDRVIKSLA 438

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L        F+GR GGEEFA     + +  A  + +++R+    ++I+  + P  +  
Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDQDAACKVLDEIRQRF--AEIHYPAQPQDLWC 496

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T SAG+ E         +  +AD+ALY AK  GRNRV
Sbjct: 497 TFSAGVVEMQEDSDSLIMASQADEALYRAKHGGRNRV 533


>gi|88812240|ref|ZP_01127491.1| putative signal transduction protein [Nitrococcus mobilis Nb-231]
 gi|88790491|gb|EAR21607.1| putative signal transduction protein [Nitrococcus mobilis Nb-231]
          Length = 504

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 11/175 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           EL  +  ++ +++R D L+G  N   F   L         + + LS+ F D+D+FK +ND
Sbjct: 326 ELERTAVQLQEMARRDPLTGAYNRRYFDEMLSQRFEAATRHQQPLSLGFLDLDHFKMVND 385

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD V+A ++  +        F+ R GGEEF      ++ + A  +   +R  IE
Sbjct: 386 RYGHQAGDVVLAGVAKAISSRLRGDDFLARYGGEEFVLLLPNTNLELAQRILERIRAHIE 445

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNRV 255
             +  ++    I IT+SAG A       IS     +I  AD+ALY+AK+ GRNRV
Sbjct: 446 TEEHTVAPEHMIRITLSAGAAAHMDGSRISNKLDDLIRAADRALYLAKRQGRNRV 500


>gi|221064900|ref|ZP_03541005.1| diguanylate cyclase [Comamonas testosteroni KF-1]
 gi|220709923|gb|EED65291.1| diguanylate cyclase [Comamonas testosteroni KF-1]
          Length = 536

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 11/180 (6%)

Query: 85  ISGSILKELFISYNRISQLSR---IDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDY 138
           +  ++LK L +    I++L      D L+GL N     A I++  +     S++  DID+
Sbjct: 351 LKKAMLKGLNLLQRNITKLREDVNTDPLTGLGNRRHLEAAITAFQTQALPFSVIAIDIDH 410

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND FGH  GD+V+  L+  +  V        R+GGEEF     G++ + AA  A  
Sbjct: 411 FKRINDGFGHDTGDEVLRQLARTMREVSRIDDVPCRMGGEEFLLLLPGTAPEAAAHAAER 470

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           LR+++E  ++     P  HITIS G+A      P I  +  +AD  LY AK+ GRNRV+ 
Sbjct: 471 LRQLVEKMEMP----PVGHITISLGVAHWPDSAPDIKAVFQQADAMLYAAKRGGRNRVMV 526


>gi|146306296|ref|YP_001186761.1| diguanylate cyclase [Pseudomonas mendocina ymp]
 gi|145574497|gb|ABP84029.1| diguanylate cyclase [Pseudomonas mendocina ymp]
          Length = 355

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 87/168 (51%), Gaps = 13/168 (7%)

Query: 101 SQLSR------IDCLSGLLNHSAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           SQL R      +D L+ + N  AF      +L   ++ L++V  DID+FKQ ND +GHP+
Sbjct: 177 SQLERAHLAATLDSLTRVFNRHAFTRLLERALSETHKGLALVILDIDHFKQFNDQYGHPL 236

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQIN 209
           GD+V+  +   L  +  +  F  R GGEEF        +  A +  A  LR  I+  ++ 
Sbjct: 237 GDRVLQHVGQLLRDLLPSGAFAARYGGEEFCVVLRDCVDLGAVLEFAEKLRNKIQALRVK 296

Query: 210 ISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +     +   IT S G A     + + T++ RAD ALY AK+SGRN+V
Sbjct: 297 VRRTDQVLDSITASFGCALAEADDSLETLLTRADDALYQAKRSGRNQV 344


>gi|108757503|ref|YP_629777.1| FHA domain/GGDEF domain-containing protein [Myxococcus xanthus DK
           1622]
 gi|108461383|gb|ABF86568.1| FHA domain/GGDEF domain protein [Myxococcus xanthus DK 1622]
          Length = 354

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 81/159 (50%), Gaps = 11/159 (6%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N   F+  L         Y   L+++ FDID+FKQIND  GH  GD V+  L+
Sbjct: 197 DGLTGINNKRYFLEYLEKEMGRSTRYQRTLTLMMFDIDHFKQINDVHGHLAGDYVLRELA 256

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +  +        R GGEEFA         +A + A  +R++IE     +     I +T
Sbjct: 257 QSIKRLVRREQCFARYGGEEFAVVLPEDGPDKARLFAEKIRRLIEGKSF-VYDDKEIPVT 315

Query: 220 ISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVV 256
           IS G+AE+     EP +  I  AD  LY AKKSGRNRVV
Sbjct: 316 ISIGVAEQTSDMLEP-THFIKVADANLYKAKKSGRNRVV 353


>gi|310643269|ref|YP_003948027.1| diguanylate cyclase with pas/pac sensor [Paenibacillus polymyxa
           SC2]
 gi|309248219|gb|ADO57786.1| Diguanylate cyclase with PAS/PAC sensor [Paenibacillus polymyxa
           SC2]
          Length = 327

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 85/165 (51%), Gaps = 12/165 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAF----ISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVG 151
           ++  ++  D L+GL N   F    + SL S+ E     S++  DID FK IND +GHPVG
Sbjct: 160 QLETMASTDPLTGLKNRRYFQDQLLVSLASFQETGIPFSLLIIDIDRFKSINDTYGHPVG 219

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  L++ L  +      V R GGEEF     G+ ++EA   A   R +  +      
Sbjct: 220 DLVLTNLAELLQSMSREMDIVARYGGEEFVIILPGNDQEEAIRTAERYRSMTASRDWGEY 279

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S     IT+S G+A     +   +I+++AD ALY +K  GRNRV 
Sbjct: 280 S-----ITVSIGVATVTQADTEQSIVHQADFALYASKSGGRNRVT 319


>gi|322420086|ref|YP_004199309.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M18]
 gi|320126473|gb|ADW14033.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M18]
          Length = 319

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 119/259 (45%), Gaps = 27/259 (10%)

Query: 18  NLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISIT 77
            ++  +P T ++  +   S+  A     A  + + +   PF  L+ I     S V     
Sbjct: 65  RIKEHNPDTQVVIMTSHASLDSALTALRAGAYDYLV--KPFESLDLI-----SAVAGRAA 117

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRI-------DCLSGLLNHSAFISSLGS------ 124
               L   +  +L++L  +   + + +R        D L+ L NH  F  +L        
Sbjct: 118 EKARLVAQNRELLEQLTKANEELQEANRALKEMAIRDGLTSLYNHRYFQEALAREVVRSK 177

Query: 125 -YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            Y+++  +VFFD+D FKQ ND  GHP GD+++  L+  +++         R GGEEF   
Sbjct: 178 RYDKRCCLVFFDVDNFKQYNDTHGHPEGDRLLKGLARIIMLRSRGCDLAARYGGEEFVLL 237

Query: 184 ALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKEPIS---TIIYR 239
              + ++ A  +A D+R ++ E+      + P   +T+S G+A  C  E  S   T++  
Sbjct: 238 LPETGKEAALTVAEDMRVRVAEHPFAGRETQPLGTVTVSIGVA--CFPEDGSDAATLLCC 295

Query: 240 ADQALYVAKKSGRNRVVCF 258
           ADQ LY AK SG+NRV   
Sbjct: 296 ADQLLYQAKNSGKNRVAAM 314


>gi|119898419|ref|YP_933632.1| GGDEF-domain-containing protein [Azoarcus sp. BH72]
 gi|119670832|emb|CAL94745.1| GGDEF-domain containing protein [Azoarcus sp. BH72]
          Length = 471

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 13/166 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+G  N   F+++L S           L+++  DID+FK IND  GHP GD
Sbjct: 303 LRRLAATDPLTGASNRRQFMATLASEWARARRERAPLALLALDIDHFKHINDRHGHPAGD 362

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +         +      +GR+GGEEFA    G+   +A  +A  +R  +E   ++I  
Sbjct: 363 HALKTFVSAAAGLLRPGDVIGRIGGEEFAIVLPGTQAADAHGIAERIRHGVEALALDIDG 422

Query: 213 GPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            P + +T+S G+A     C  EP   ++  AD+ LY AK +GRNRV
Sbjct: 423 VP-VALTVSVGVAVSGPSC-TEP-GDLLKEADRRLYEAKNAGRNRV 465


>gi|254785900|ref|YP_003073329.1| response regulator receiver domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237683439|gb|ACR10703.1| response regulator receiver domain protein [Teredinibacter turnerae
           T7901]
          Length = 307

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 88/158 (55%), Gaps = 8/158 (5%)

Query: 107 DCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++G+ N +A+ ++          +  +LS++  DID+FKQ+NDN+GH  GDK++  L+
Sbjct: 150 DPVTGIGNRAAWDAAYQREVKLATRHGTELSLLVIDIDHFKQVNDNYGHQQGDKLLKHLA 209

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      ++ ++AA+ A  +R  +  S   I+    +  +
Sbjct: 210 KTLQDSLRETDQVFRYGGEEFVVILNNTNAKDAALTAERIRLQVAMSPALIND-QEVFAS 268

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A  C  +  +++  RAD A+Y AK++GRN+V C
Sbjct: 269 VSIGVAHLCADDDPTSLFNRADCAMYAAKRAGRNKVSC 306


>gi|296274592|ref|YP_003657223.1| extracellular sensor-containg diguanylate cyclase [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098766|gb|ADG94716.1| diguanylate cyclase with extracellular sensor [Arcobacter
           nitrofigilis DSM 7299]
          Length = 709

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 104/226 (46%), Gaps = 23/226 (10%)

Query: 48  IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK----------ELFISY 97
           IF  ++ +    G++Y LV  +S  I +I   +L+ Y +  I+K          ++ +  
Sbjct: 488 IFSKWVPIKYQKGIDYDLVWKIS--IGAILFIILVVYWNRKIIKTNRLLQEAKKDIEVKN 545

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
             + +L+  D L+ L N           ++    +N    I   DIDYFK++ND FGH  
Sbjct: 546 KELEKLAITDKLTNLYNRRKLDELLQHELNRSERFNHTFGIAILDIDYFKKVNDTFGHQA 605

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDKV+  LS+ L     T  FVGR GGEEF      S +     L   +R  IEN     
Sbjct: 606 GDKVLIELSNILKTHIRTTDFVGRFGGEEFVIICPESQKDGVYNLMESIRLDIENYTFKD 665

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                  IT S G+      +   +++ RAD ALY AK  GRNRVV
Sbjct: 666 IG----KITTSFGVTLSKENDTSESLLKRADIALYEAKSLGRNRVV 707


>gi|114562009|ref|YP_749522.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114333302|gb|ABI70684.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 627

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 20/175 (11%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQ 141
           I K+LF       +L+  D L+ L N          F+ S     +  SI+ FD D+FK 
Sbjct: 458 IRKQLF------RRLALTDELTKLANRRDTYSQGHYFLKSSKLSGKPFSIISFDADHFKM 511

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH +GDKV+  L+     +      VGR+GGEEF        + +A  +AN L +
Sbjct: 512 VNDTLGHDMGDKVLVKLASISASMMRDTDVVGRVGGEEFLILLPNIDKTKAIEIANRLIE 571

Query: 202 IIEN---SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            I +   +QI     P++H T+SAG+A   ++E +S ++ +AD+ALY AK +GRN
Sbjct: 572 TIADYDWTQI----APNLHQTVSAGVASYSNEEDLSPLLLKADKALYSAKAAGRN 622


>gi|24215628|ref|NP_713109.1| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
 gi|24196785|gb|AAN50127.1| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
          Length = 317

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 100/211 (47%), Gaps = 34/211 (16%)

Query: 82  LGYISGSILKELFISYNRISQLS--------------RIDCLSGLLNHSAF-------IS 120
           L Y++G  + ++  S  +ISQL+                D L+ L N   F       I 
Sbjct: 106 LVYVTGRDITDVIKSNRKISQLAVKLKETNDRLFEQASTDPLTKLKNRRMFNEELNNLIH 165

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           +    +  LS++  D D+FK  ND FGH  GDKV+  L+  L   F     + R GGEEF
Sbjct: 166 ACDKESHPLSLLMIDADHFKDYNDKFGHIAGDKVLVELASILTKTFRKKDVLARYGGEEF 225

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--------AERCHKEP 232
            AA   +SE EA  +A  L + +        S     +TIS GI        ++  + E 
Sbjct: 226 IAALPNTSEPEANQIAERLVQTVREFSWEKRS-----VTISVGITTYNFNPTSKSINSEY 280

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +  +I +AD+ALY +K SGR+R+  FS ++N
Sbjct: 281 LLNLIEQADKALYCSKVSGRDRITHFSWVQN 311


>gi|332525658|ref|ZP_08401809.1| uroporphyrin-III C/tetrapyrrole methyltransferase [Rubrivivax
           benzoatilyticus JA2]
 gi|332109219|gb|EGJ10142.1| uroporphyrin-III C/tetrapyrrole methyltransferase [Rubrivivax
           benzoatilyticus JA2]
          Length = 839

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 87/174 (50%), Gaps = 12/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQIN 143
           +  F+   R    S  D L+GL N+        A  ++     +  + +  D+D FK +N
Sbjct: 396 RRAFVERRRYRWQSEHDGLTGLYNYQQVRKLGEAAFAAACRRGQPFTAIVADVDRFKGVN 455

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+FGH  GD  +  L   +  V G     GR GG+EF       + Q  A+L   LR+ I
Sbjct: 456 DHFGHAAGDAALRSLGGWIAEVVGARGIAGRSGGDEFTILLKDDAAQAEALL-RQLRERI 514

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           E  ++    G ++H +IS+G+ E     E +  +++ ADQALY AK SGRNR+V
Sbjct: 515 EPIEV---FGKTVHFSISSGVCEAGEGIETLEQLVHEADQALYRAKHSGRNRIV 565


>gi|330901520|gb|EGH32939.1| GGDEF domain-containing protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330977287|gb|EGH77242.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 689

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 85/161 (52%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q + ID L+GL N +A+       +  + E    L +   D+D+FK+IND +GH  GDKV
Sbjct: 527 QKALIDPLTGLPNRAAWGERLEQEMARWQEDKNSLLVCILDLDHFKRINDGYGHLAGDKV 586

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +++ L        F+ R GGEEF      +S      L ++LR  +E+   +   G 
Sbjct: 587 LKIVANVLSKRLRADDFMARFGGEEFVMLLPATSPAAGLTLLDELRAAVESCPFHF-KGE 645

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT+S G+      E   T I RADQALY AK++GRNR+
Sbjct: 646 RVTITVSIGLTAFRPSEKSDTAIKRADQALYKAKENGRNRI 686


>gi|326318358|ref|YP_004236030.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375194|gb|ADX47463.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 357

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 104/234 (44%), Gaps = 22/234 (9%)

Query: 41  TVIFIANIFLFYIGL----------TPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
           T + +  +F+FYIG+           P   L   +    ++ ++    +    Y  GS+L
Sbjct: 127 TPVMLLALFVFYIGMYELSRRYGAQAPLGDLGLSVTHAFNVAVVFAMAAYTARYYYGSVL 186

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +    +  R+   +  D L+GL N           I+      +  ++V  DID+FK+IN
Sbjct: 187 R----AERRLEDQAATDPLTGLSNRRRLASLAQERIAQARQAGQPTAVVIADIDHFKRIN 242

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+V+  +++ L         + R GGEEF       +  +A  LA  +R  +
Sbjct: 243 DTHGHEAGDRVLVHVAELLARSSRARDLLARWGGEEFLVVMPTCALADAQALAERMRAAV 302

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +         +I  ++S G+A+    E +   I RAD ALY +K +GRNRV  
Sbjct: 303 ADRPAR-HGALAIPASLSLGVAQLRSGESLEAAIARADGALYASKHAGRNRVTT 355


>gi|88797521|ref|ZP_01113110.1| response regulator receiver domain protein (CheY-like) [Reinekea
           sp. MED297]
 gi|88779693|gb|EAR10879.1| response regulator receiver domain protein (CheY-like) [Reinekea
           sp. MED297]
          Length = 560

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 83/172 (48%), Gaps = 11/172 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           K L IS   +  LSR D L+GL N  A        +S    Y    +++  D+D FK IN
Sbjct: 380 KALSISNGELKTLSRQDPLTGLYNRRAMLPMIEDAVSEYQRYELPSTLMLLDLDDFKLIN 439

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH +GD V+  ++  L  V      + R GGEEF   A G   +EA      +RK I
Sbjct: 440 DQLGHNIGDAVLKSVAYVLQSVSRRTDTIARWGGEEFLILAKGIHAEEAFRYLEKVRKQI 499

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             SQ  I   P   IT SAG+ E        T+I  ADQA+Y AK +G++R 
Sbjct: 500 RESQ-TIDDRP---ITFSAGVCEVQANHTADTLIAEADQAMYDAKLNGKDRT 547


>gi|239906409|ref|YP_002953150.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239796275|dbj|BAH75264.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 340

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 117/254 (46%), Gaps = 26/254 (10%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL--- 80
           PH  +++    F + +A+ +FI    L    L+P   L+ I  E  ++V+    + L   
Sbjct: 92  PHNAVVWSMHGFCLLLASTLFIRAAILCAGWLSPGSALDAIGPELTAIVLFGNMLCLDAL 151

Query: 81  -----LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128
                LL ++       L  +   I + S+ID L+G  N S         +S   S  E 
Sbjct: 152 ILCFPLLDFMDAQ--SRLSQATQEIIERSKIDVLTGAYNRSHMQSRLHHHVSRCSSSGET 209

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            S++ FD+D+FK IND +GH +GD+V+A +  Q+         + R GGEEF      + 
Sbjct: 210 FSLILFDLDHFKAINDTYGHVIGDRVLAQVGSQVKSSLRRYDELFRFGGEEFLVILPDTD 269

Query: 189 EQEAAILANDLRKIIENSQINISSGPSI----HITISAGIAERCHKEPISTI-IYRADQA 243
              A  +A  LR+ I N   +   GP+I     IT S GIA        + I + + D A
Sbjct: 270 ANHACDIAERLRQEIANLLFD---GPNISEQFRITSSFGIASTTKATRSADILLQQTDAA 326

Query: 244 LYVAKKSGRNRVVC 257
           LY AK  GRN +VC
Sbjct: 327 LYKAKAQGRN-MVC 339


>gi|298529787|ref|ZP_07017190.1| response regulator receiver modulated diguanylate cyclase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511223|gb|EFI35126.1| response regulator receiver modulated diguanylate cyclase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 427

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISS---------LGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           I +L+  D L+GLLN  +F +S          G+ N  L +   DID+FK+ ND +GH  
Sbjct: 264 IRELAEKDFLTGLLNRRSFFNSGEKLFANALRGNLN--LVVSMMDIDHFKKCNDKYGHDA 321

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+VI F++D+L         V R GGEEF    +    +    +   +R  IENS I  
Sbjct: 322 GDEVICFVADRLKSSLRQSDLVARFGGEEFCVVGVNMHSENITEVFEKIRADIENSVIR- 380

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S    + +T+S G+     K  +  +I  AD  LY AK  GRN+V
Sbjct: 381 SGEHEMRVTVSIGVCSTL-KSSLEEMITCADDMLYKAKNQGRNQV 424


>gi|254503168|ref|ZP_05115319.1| hypothetical protein SADFL11_3207 [Labrenzia alexandrii DFL-11]
 gi|222439239|gb|EEE45918.1| hypothetical protein SADFL11_3207 [Labrenzia alexandrii DFL-11]
          Length = 722

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 98/179 (54%), Gaps = 14/179 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKL-SIVFFDIDYFKQIN 143
           K L  +   + +++ ID L+G++N  AF+ +  +        ++L + V  DID FK+IN
Sbjct: 539 KALMQAKINLERIASIDDLTGIMNRRAFLEAANTEVARYRRTQRLFTAVMIDIDNFKRIN 598

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KI 202
           D  GH VGD+V+   +  +          GR+GGEEF      ++ ++A +++  LR KI
Sbjct: 599 DRCGHAVGDEVLKKFTGIIGGALRAVDVFGRVGGEEFCMILHNTTMEDAMLVSQRLREKI 658

Query: 203 IENSQI-NISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           +E  Q  N+       IT S G+A    ++   ST++ RAD ALY AK++GRNR V F+
Sbjct: 659 VEECQFDNVDQA----ITCSMGLASIAREDVEFSTLMQRADTALYTAKETGRNRCVEFT 713


>gi|88859722|ref|ZP_01134362.1| GGDEF domain protein [Pseudoalteromonas tunicata D2]
 gi|88818739|gb|EAR28554.1| GGDEF domain protein [Pseudoalteromonas tunicata D2]
          Length = 293

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 9/164 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVG 151
           ++++LSRID L+GL     F+    +    Y  K    SI+  D+D+FK++ND FGH  G
Sbjct: 124 KLTELSRIDSLTGLFLRRYFLELAQNEFDLYARKKQPFSILMLDLDFFKRVNDQFGHACG 183

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DKV+   +  +         V R GGEEF      +  +EA  +A  +     N ++   
Sbjct: 184 DKVLICFAQLMKESLRKTDVVARWGGEEFIVLLPNTRLKEAVEIAKLINMHTRNKKMACE 243

Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
           +  +I IT+S G+ E   + E + T+I +AD+ LY AK +GR+R
Sbjct: 244 TN-TITITVSIGVIEMHDEFEHLQTMITQADELLYQAKNNGRDR 286


>gi|313200860|ref|YP_004039518.1| diguanylate cyclase [Methylovorus sp. MP688]
 gi|312440176|gb|ADQ84282.1| diguanylate cyclase [Methylovorus sp. MP688]
          Length = 398

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 120/239 (50%), Gaps = 19/239 (7%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYIL------VENLSLVIISITISLLLGYISGSILKEL 93
           A + F   + + Y G++  +    IL        N+  +++   + +L+ +  G ++   
Sbjct: 158 AVIFFTMALLMAYRGISALFADGPILDHPMGWQPNVLTLLVGSMLQMLVTF--GLVMMVS 215

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF------ISSLGSYNEK-LSIVFFDIDYFKQINDNF 146
           F   + + Q +  D L+G+LN          ++S G  N+  L ++  DID FK IND +
Sbjct: 216 FRKSSELEQYAHYDALTGILNRRGLEEAARRLASFGRRNDSGLVMLLLDIDLFKHINDRW 275

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GHPVGD+V+  L+ Q+         + R GGEEF     GS+EQE    A  +R+ +E+ 
Sbjct: 276 GHPVGDEVLRQLTRQIKTQTREEDVLARYGGEEFCLLLPGSTEQEGIQCAERIRQSVES- 334

Query: 207 QINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            + I  GP ++  T+S GI   R       +++  AD ALY AKK+GRN+ V +S +  
Sbjct: 335 -LRIVQGPVTLQFTVSVGITCARLAGYDFRSLLASADAALYAAKKAGRNQGVAYSSLSG 392


>gi|284028326|ref|YP_003378257.1| diguanylate cyclase [Kribbella flavida DSM 17836]
 gi|283807619|gb|ADB29458.1| diguanylate cyclase [Kribbella flavida DSM 17836]
          Length = 466

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 100/202 (49%), Gaps = 21/202 (10%)

Query: 72  VIISITI--SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129
           V IS+T   +LLLG +      E  +  +  ++L R+D           + +  +  E +
Sbjct: 225 VPISLTAQRALLLGQL------ESEVQTDPKTKLGRVDWWRQRTEE--MLRTARTQREPM 276

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID+FKQ+ND  GH VGD+ +  ++  L         +GR GGEEF  A   +  
Sbjct: 277 AVLLIDIDHFKQVNDRHGHLVGDEALRAVATILRSAIRAKDVIGRFGGEEFVIALPDTDG 336

Query: 190 QEAAILANDLRKIIENSQI-----NISSGPSI-----HITISAGIAE-RCHKEPISTIIY 238
            +AA+ A+ LR  +  S +      +   P +     H+T+S G+A        +  ++ 
Sbjct: 337 TDAAVTADRLRSAVAASPLAAMCAGVLDDPELDPDTFHLTVSVGVAVYPSDGHTVDELLR 396

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
           RAD+A+Y AK +GR+RV   +D
Sbjct: 397 RADRAMYAAKAAGRDRVRLAAD 418


>gi|117618033|ref|YP_857544.1| GGDEF domain-containing protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559440|gb|ABK36388.1| GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 352

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 6/190 (3%)

Query: 72  VIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYN 126
           +   +T   + G+  ++   + +L      +S+LS  D L+ L N  A    + +L    
Sbjct: 160 ITAQLTADAMPGWHIVTLRDIHDLHCMIEEVSRLSCTDPLTELGNRRAAGQQLQALWLQG 219

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           E  S++  DID+FKQIND +GHP GD  +  ++  +         + R GGEEF     G
Sbjct: 220 EPFSLILCDIDHFKQINDRYGHPAGDAALCEVARIMTRQLQPAEHLARWGGEEFLLILPG 279

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
              ++    A  LR+      +    G S  +T+S G A +   + I +++  AD+ALY 
Sbjct: 280 VDAEQVVERAEQLRRQFVGHVVTW-EGQSFSLTMSLGCATQEEGQGIDSLLLVADKALYQ 338

Query: 247 AKKSGRNRVV 256
           AK +GRNRVV
Sbjct: 339 AKSNGRNRVV 348


>gi|126462830|ref|YP_001043944.1| response regulator receiver modulated diguanylate cyclase
           [Rhodobacter sphaeroides ATCC 17029]
 gi|126104494|gb|ABN77172.1| response regulator receiver modulated diguanylate cyclase
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 461

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 13/168 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+ +D L+GL N     + L +        +E+ +++  D+D FK +ND +GH  GD V
Sbjct: 287 RLAVVDPLTGLYNRRYAGAHLAAVAERARAADERFAVMVIDLDRFKSVNDRWGHGAGDAV 346

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSG 213
           +  ++ +L         + R+GGEEF  A       E A  +A  LR+ +E   + +  G
Sbjct: 347 LVAVARRLHANLRPGDLIARIGGEEFLVALPDVPRPEDAHAVAERLREAVEEEPVPLPGG 406

Query: 214 PSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S+ +TIS G+A          EP+  ++ RAD AL +AK +GRN+V 
Sbjct: 407 GSLRVTISVGLALSPDGAGRRAEPVDAVVQRADSALLLAKSAGRNQVT 454


>gi|307717794|ref|YP_003873326.1| hypothetical protein STHERM_c00770 [Spirochaeta thermophila DSM
           6192]
 gi|306531519|gb|ADN01053.1| hypothetical protein STHERM_c00770 [Spirochaeta thermophila DSM
           6192]
          Length = 298

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 93/194 (47%), Gaps = 10/194 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------ 122
           ++L  ++I + LL+     +I  EL     R+ +LS  D L+GL N   F   L      
Sbjct: 104 VALTGVTIGVMLLIRMYRMTI-SELSEKQRRLIELSITDDLTGLYNARYFYRRLEEEIAR 162

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              Y   LS++F D+D FK+ ND +GH  GD+V+  ++  L           R GGEEF 
Sbjct: 163 SRRYGRPLSLLFIDLDDFKRFNDTYGHLAGDRVLRKVARVLRESLRENDSAYRYGGEEFV 222

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                +  +E  + A  +R+ IE    +      + +T S G+ E    + I   + RAD
Sbjct: 223 IILPETGAEEGCVAAERVRRRIEVC--SFRGKEKVKVTASVGVVEYREGDAIEDFVRRAD 280

Query: 242 QALYVAKKSGRNRV 255
           QA+Y AK  G+NR+
Sbjct: 281 QAMYKAKAEGKNRI 294


>gi|260777191|ref|ZP_05886085.1| GGDEF domain protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606857|gb|EEX33131.1| GGDEF domain protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 603

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 94/163 (57%), Gaps = 7/163 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++ +L R D L+G+LN  A ++    +   N    I   D+D+FKQINDN+GH +GD V
Sbjct: 434 SQLVKLVREDPLTGILNRRALVNHAEDIRRLNASSCICMMDLDHFKQINDNYGHAIGDSV 493

Query: 155 I-AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212
           +  F +  +  +  T +F GRLGGEEFA     +  ++AA LA  +R  +E   + ++ S
Sbjct: 494 LKTFCTLVMSEIRDTDIF-GRLGGEEFALILPETQLEDAASLAERIRSRVELQLVASLRS 552

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                +T+S G+ E    +  +  +  AD+ LY+AK+SGRN++
Sbjct: 553 VVCSKVTVSIGVVEWL-DDDFAKALSSADKQLYMAKESGRNQI 594


>gi|229491123|ref|ZP_04384951.1| diguanylate cyclase/phosphodiesterase [Rhodococcus erythropolis
           SK121]
 gi|229321861|gb|EEN87654.1| diguanylate cyclase/phosphodiesterase [Rhodococcus erythropolis
           SK121]
          Length = 522

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 103/188 (54%), Gaps = 19/188 (10%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSY---NEKLSIVFFDIDYFK 140
           ++L+++  + + +   +  D L+ L N +AF     S++ +Y   N    ++  D+D FK
Sbjct: 332 ALLQQISAAQDELRYRAHHDPLTELANRAAFDEHFASAIENYRHTNSDWVLMLVDLDDFK 391

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           QIND +GHP GD+++  L+ +L        FV R GG+EF     G+ + +A ++A   R
Sbjct: 392 QINDRYGHPAGDRLLVALTARLREAVPEGAFVARFGGDEFTVLLQGTID-DAVVVA---R 447

Query: 201 KIIENSQINISSGPSIHITISAGIAE------RCHKEPIS--TIIYRADQALYVAKKSGR 252
           +I++  + + ++  S+ +  S G+A           EP+S  T++ +AD A+Y AK+SG+
Sbjct: 448 RIVDALRSDQTADTSVSVGASVGVAHFESAQFEFGDEPLSAHTLLRQADAAMYEAKRSGK 507

Query: 253 NRVVCFSD 260
             VV + D
Sbjct: 508 GAVVVYGD 515


>gi|120613403|ref|YP_973081.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
 gi|120591867|gb|ABM35307.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
          Length = 403

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 16/183 (8%)

Query: 93  LFISYNRI----SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           +F++ +R      +++  D L+ + N  A I++L           E LS++  DID+FK+
Sbjct: 205 IFMARDRADAANERMAARDPLTDVPNRRATIAALDRCVAQAVRSGEPLSVMMLDIDHFKR 264

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH  GD+V+  + D L     +   +GR GGEEF      +    A +LA +LR 
Sbjct: 265 INDGLGHLAGDQVLCGVVDVLGERLRSQDLIGRYGGEEFLVLLPRTPLAGAQVLAGELRA 324

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCF 258
            +E +     +G ++ +T+S G+A     EP      ++  AD+A+Y AK+SGRN+V   
Sbjct: 325 AVEQAHFEF-AGRTVPVTLSIGVAGGV-LEPGDRWDGLVAAADEAMYRAKRSGRNQVATT 382

Query: 259 SDI 261
           +++
Sbjct: 383 AEV 385


>gi|260768564|ref|ZP_05877498.1| GGDEF domain protein [Vibrio furnissii CIP 102972]
 gi|260616594|gb|EEX41779.1| GGDEF domain protein [Vibrio furnissii CIP 102972]
          Length = 336

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 82/164 (50%), Gaps = 8/164 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           N +S L+  D L+G  N  +  S+   +      N  L ++  D+DYFKQ+ND FGH  G
Sbjct: 157 NSLSYLASRDSLTGAHNRLSLSSAFNHFEQHKDDNSSLCLLIIDLDYFKQVNDEFGHDTG 216

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DKV+   +  L  V G      R+GGEEF          +A  +   LR I+     N  
Sbjct: 217 DKVLIETTQLLAQVVGDENLF-RIGGEEFCVTLFDQGLTQAERVGERLRGIVGQHLYNYR 275

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   I +T+S GI E    + +S ++  AD  LY AKK+GRN+V
Sbjct: 276 N-QRIALTLSVGICEYRDGDNLSDLLKLADVELYRAKKNGRNQV 318


>gi|296283340|ref|ZP_06861338.1| diguanylate cyclase [Citromicrobium bathyomarinum JL354]
          Length = 330

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/181 (34%), Positives = 93/181 (51%), Gaps = 18/181 (9%)

Query: 91  KELFISYNRISQLSR----------IDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDID 137
           +EL  + NRI +L R          +D L+G+ N  A    I  L     +  +   DID
Sbjct: 141 RELSNASNRIDRLQRDLDEARNKALVDELTGIPNRRATRATIQDLEIRKVRYCLGLIDID 200

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILA 196
           +FK IND +GHPVGD+ +  +++ L     +P  V R GGEEF   A +  +++ A  +A
Sbjct: 201 HFKAINDTYGHPVGDRALKLVAEALSESL-SPWPVARWGGEEFLVIAEVADAKKLAERVA 259

Query: 197 NDLRKIIE-NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                + E N ++  +  P   IT SAG+A   + E     + RAD ALY AKK+GRN V
Sbjct: 260 EAKETLAERNLKLRETDEPMGPITFSAGVA--VNSETSDETLRRADNALYEAKKAGRNTV 317

Query: 256 V 256
           +
Sbjct: 318 L 318


>gi|158421902|ref|YP_001523194.1| putative diguanylate cyclase [Azorhizobium caulinodans ORS 571]
 gi|158328791|dbj|BAF86276.1| putative diguanylate cyclase [Azorhizobium caulinodans ORS 571]
          Length = 568

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 88/169 (52%), Gaps = 10/169 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            R++ L+R D L+GL N   F   L           + L ++  D+D+FK  ND  GH  
Sbjct: 387 GRLTALARTDGLTGLANRRTFDVQLSEDWVRTRETGQPLGVLMIDVDHFKPYNDTLGHLA 446

Query: 151 GDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD+ +  ++  L+  V GTP  V R GGEEF     G+    A  +A D+R+++E  +I 
Sbjct: 447 GDEALRAVARMLIAAVAGTPYLVARYGGEEFVVLMPGAGRDAAEAIAQDVRRLVETLEIV 506

Query: 210 ISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256
             S     +T+S G+A     E  S   ++  ADQALY AK +GRNRVV
Sbjct: 507 HPSAAYRRLTVSVGVAVAMPLEGDSPDALLAAADQALYEAKAAGRNRVV 555


>gi|328470024|gb|EGF40935.1| hypothetical protein VP10329_04472 [Vibrio parahaemolyticus 10329]
          Length = 409

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 10/168 (5%)

Query: 100 ISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I+ LS +D L+GL N  A        ++     N  +SIV  D+D FK IND +GH  GD
Sbjct: 229 INDLSHLDALTGLYNRRAMEVIVPNLVNQAREKNTPISIVMTDVDDFKAINDQYGHTTGD 288

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+A ++              R GG+EF    L ++E   A  A  +R+ IE     ++ 
Sbjct: 289 SVMATIATIFKQTLPESACTVRFGGDEFMIVLLANAENAKA-YAELVRRSIERETSLLAF 347

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                +T+S GI+E    + +   + RAD+ALY +K +GRN+V  F D
Sbjct: 348 KN--QVTMSFGISELMPNDSLQDALTRADEALYCSKHTGRNQVTTFQD 393


>gi|254457111|ref|ZP_05070539.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207085903|gb|EDZ63187.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 415

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 82/163 (50%), Gaps = 7/163 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I+  +  D L+GL N   F  ++  Y        E+ ++   DID FK IND +GH +GD
Sbjct: 250 ITNHANRDFLTGLYNRRYFFQNMQEYIEDTKESGEQFAVSMIDIDNFKHINDTYGHDIGD 309

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KVI  +S+ L         V R GGEEF       ++  A+ +   LR+ +E     I +
Sbjct: 310 KVITSISEILRTNTSYRDIVARFGGEEFCVVLKNINKYSASDILERLRQEVEKFNFTIDA 369

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             SI  TIS G++     + +   I +AD  L+ AK++G+NR+
Sbjct: 370 NKSIKFTISIGVSIHDDDDTLEETINQADMMLHGAKQNGKNRI 412


>gi|158424750|ref|YP_001526042.1| GGDEF domain-containing protein [Azorhizobium caulinodans ORS 571]
 gi|158331639|dbj|BAF89124.1| GGDEF domain protein [Azorhizobium caulinodans ORS 571]
          Length = 506

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 83/167 (49%), Gaps = 13/167 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           + QLS  D L+GL N   F   +     +       LS+V  D D+FK +ND FGH  GD
Sbjct: 331 LEQLSVTDFLTGLANRRRFDEVVQREFRRAVRTDGWLSVVIIDADHFKALNDRFGHSAGD 390

Query: 153 KVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           + +  ++  +         +G RLGGEEFA     +S   A  L   +R+ +E    N  
Sbjct: 391 ETLKMIATAISSCARRASDLGARLGGEEFAIVLPDTSAAAAYELTERIRRTMEAHAFNPD 450

Query: 212 SGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             P+   T+SAGIA   +R   E +  +I  ADQALY AK +GRNR 
Sbjct: 451 GPPA--TTLSAGIASTKDRPAPESVRALIEAADQALYRAKNAGRNRT 495


>gi|107027511|ref|YP_625022.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia cenocepacia
           AU 1054]
 gi|116693777|ref|YP_839310.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia cenocepacia
           HI2424]
 gi|105896885|gb|ABF80049.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia cenocepacia
           AU 1054]
 gi|116651777|gb|ABK12417.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia cenocepacia
           HI2424]
          Length = 313

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 13/182 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           + +E   +  ++ + +  D L+G+ N   F + LG        Y   LS++ FD+D+FK 
Sbjct: 135 MQREREEAVAKLREHANRDGLTGIANRRFFEARLGDEFARWQRYGGDLSVLLFDLDHFKT 194

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH  GD V+   + ++  +       GR GGEEFA     ++  EA  +A+ +R+
Sbjct: 195 INDRFGHAAGDAVLRETARRVASIVRAQDTFGRFGGEEFALLLPCTNLDEAMRVADKVRE 254

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCF 258
            I +  ++ + G S+ +T S G    C K    T   ++  AD ALY AK+ GR+R V +
Sbjct: 255 AIGSMPVD-AEGVSVPVTASVGGT--CAKAGALTCDVLVNEADAALYRAKRLGRDRSVAY 311

Query: 259 SD 260
           +D
Sbjct: 312 AD 313


>gi|323529618|ref|YP_004231770.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1001]
 gi|323386620|gb|ADX58710.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1001]
          Length = 777

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 91/170 (53%), Gaps = 16/170 (9%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFG 147
           F+  ++++QL+  D L+GL N  AF++         +   ++S +F DID FK +ND FG
Sbjct: 189 FLLEDQLAQLAATDPLTGLQNRRAFVAQAERRLADVARGGQVSAIFVDIDNFKSLNDRFG 248

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMF--VGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           H VGD  +A      V++ GT     V R+GGEEFA  + G     A  LA  LR  I  
Sbjct: 249 HAVGD--LALRQVAQVLLDGTTHGDSVSRIGGEEFAVLS-GEDLAGALRLAERLRGAIAA 305

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +      P  ++T S G+AE    E I  ++ RAD+AL  AK SGRNRV
Sbjct: 306 LER-----PDGNLTASFGVAEHRGGENIMVLLDRADEALLRAKHSGRNRV 350


>gi|262165779|ref|ZP_06033516.1| GGDEF domain protein [Vibrio mimicus VM223]
 gi|262025495|gb|EEY44163.1| GGDEF domain protein [Vibrio mimicus VM223]
          Length = 352

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 117/264 (44%), Gaps = 30/264 (11%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           +W C       F P  F I+ S  F+   +++  I              G+ Y  ++N  
Sbjct: 98  VWSC-------FVPILFYIFTSARFAFLTSSLFLILQ-----------SGIVYWQLQNEP 139

Query: 71  LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSY 125
           L+  S+ + L   YI   ++  ++    R     +  L+  D L+   N  +  +S   +
Sbjct: 140 LISWSVLLHLSFAYIGIWVVSHVYEQNRRKIENSLLYLASRDPLTSAHNRLSLTTSFQHF 199

Query: 126 NE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            +      LS++  D+D+FK IND FGH  GDKV+   +  L  V G      R+GGEEF
Sbjct: 200 EQFNDQTTLSLLVIDLDFFKSINDQFGHDTGDKVLIETTRLLAQVVGDNNLY-RIGGEEF 258

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                  S ++A  +   LR II +  I       + +TIS G+ E    + ++ ++  A
Sbjct: 259 CVTLFDQSLEQAERVCERLRAII-SQHIFAFGDKRVQVTISIGVCEYQPGDQLNDLLKFA 317

Query: 241 DQALYVAKKSGRNRVVCFSDIENN 264
           D  LY AKK+GRN+V  F   +  
Sbjct: 318 DIELYRAKKAGRNQVRLFKHAQTQ 341


>gi|119471478|ref|ZP_01613919.1| hypothetical protein ATW7_16675 [Alteromonadales bacterium TW-7]
 gi|119445577|gb|EAW26862.1| hypothetical protein ATW7_16675 [Alteromonadales bacterium TW-7]
          Length = 617

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/185 (37%), Positives = 94/185 (50%), Gaps = 15/185 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQI 142
           L+EL      + QL+  D L+G  N   F   L      S  E+  LSI+  DID+FK I
Sbjct: 436 LRELEEKNRELEQLNTEDALTGAKNRRFFDKKLVMELRRSRREQTPLSIIMIDIDHFKTI 495

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD VI   +D +      P+  V R GGEEF      ++ Q A  +A  +R 
Sbjct: 496 NDTYGHLSGDNVIKATADIIKRFLKRPLDEVARYGGEEFVILLPNTANQGAFDIAEQIRL 555

Query: 202 IIENSQINISSGPSIHITISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I  + + I +G  I  TISAG    IA+  +   + T    AD+ALY AK+ GRN+VV 
Sbjct: 556 DIYQNPV-IVAGAEIKFTISAGVYTFIADDINTPELFTEC--ADKALYSAKQQGRNQVVN 612

Query: 258 FSDIE 262
           F  I+
Sbjct: 613 FETIQ 617


>gi|78776421|ref|YP_392736.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78496961|gb|ABB43501.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM
           1251]
          Length = 539

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 11/170 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNF 146
           ++    +  ++  D L+ L N +     L        +    LS++F DIDYFK +ND +
Sbjct: 372 YVKIKELEHMASTDALTKLFNRTKLNDVLEKEMALSRTVPSPLSVIFLDIDYFKAVNDTY 431

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+V+  +++ +           R GGEEF      +   EA++L   LR  +E  
Sbjct: 432 GHDAGDRVLINIANIITSSIRAGDIAARWGGEEFMIILQATPVSEASVLGEKLRARVEGH 491

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                      ITIS G+ E  + E   + I R D+ALY AK+ GRN+++
Sbjct: 492 LFETVG----KITISLGVTEYINAESEESFIKRVDEALYEAKERGRNKII 537


>gi|30023444|ref|NP_835075.1| GGDEF family protein [Bacillus cereus ATCC 14579]
 gi|229130662|ref|ZP_04259618.1| GGDEF domain protein [Bacillus cereus BDRD-Cer4]
 gi|29899005|gb|AAP12276.1| GGDEF family protein [Bacillus cereus ATCC 14579]
 gi|228653001|gb|EEL08883.1| GGDEF domain protein [Bacillus cereus BDRD-Cer4]
          Length = 352

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 99/208 (47%), Gaps = 26/208 (12%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRI----------SQLSRIDCLSGLLN 114
           L++   +V + +  S++ GYI+       FIS N +           Q + ID L+GL N
Sbjct: 150 LIKEFHIVGLYLISSIITGYIT-------FISANYVLQSNELFQTMKQYATIDALTGLGN 202

Query: 115 HSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
              F       IS+    N+ L ++  DID+FK +ND +GHP GD+V+  +   L  +  
Sbjct: 203 VRQFDLEMNRHISNKHLKNDSLCLLLIDIDHFKHVNDTYGHPAGDEVLKQVGHILREMSA 262

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
            P  V R GGEEFA             +    R  +E     +  G  I IT+S G++E 
Sbjct: 263 FPDLVFRKGGEEFALLIPRKGIAYGIHVGEQTRIAVEKHSFELLDGTKIKITVSVGVSE- 321

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++      I  AD ALY +K++GRN+V
Sbjct: 322 -YEGASEQFIQAADDALYYSKRNGRNKV 348


>gi|228903893|ref|ZP_04068008.1| GGDEF domain protein [Bacillus thuringiensis IBL 4222]
 gi|228968547|ref|ZP_04129534.1| GGDEF domain protein [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228791151|gb|EEM38766.1| GGDEF domain protein [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228855802|gb|EEN00347.1| GGDEF domain protein [Bacillus thuringiensis IBL 4222]
          Length = 352

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 18/204 (8%)

Query: 65  LVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHSAF 118
           L++++++V + +  S++ GYI+      +L+  ELF     + Q + +D L+GL N   F
Sbjct: 150 LIKDINIVGLYLISSIITGYITFISANYVLQSNELF---QTMKQYATVDALTGLGNVRQF 206

Query: 119 -------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  IS+    N+ L ++  DID+FK +ND +GHP GD+V+  +   L      P  
Sbjct: 207 DLEMNRHISNKNMKNDSLCLLLIDIDHFKYVNDTYGHPAGDEVLKQVGCILRETSQFPDL 266

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
             R GGEEFA             +   +R  +E+    +  G  I IT+S G++E  ++ 
Sbjct: 267 AFRKGGEEFALLIPNKGLAYGIRMGEQIRIAVESHPFQLLDGTKIKITVSVGVSE--YEG 324

Query: 232 PISTIIYRADQALYVAKKSGRNRV 255
                I  AD ALY +K++GRN+V
Sbjct: 325 SSEQFIQAADDALYYSKRNGRNKV 348


>gi|317491852|ref|ZP_07950287.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920286|gb|EFV41610.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 352

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 94/183 (51%), Gaps = 4/183 (2%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFF 134
           + LL+ Y + SI +    ++ ++   S  D ++ + N  +    + +L        +V  
Sbjct: 168 LCLLVCYQTLSIKRRSVDAFFKVRAESLRDAMTKVHNRQSLELQLQALSKSRTPCCLVMI 227

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID FK +ND +GH  GD+V+  +++ + ++  +  F+ R GGEEFA          A  
Sbjct: 228 DIDNFKLVNDTYGHLAGDQVLVEVAELMNLITRSSDFIARFGGEEFAIIIHHDDLNRAFQ 287

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           +   +R  I N +  +S GP IH+T S GI+    K   +   + RAD ALY AK +G+N
Sbjct: 288 ICERIRLSISNRKFFLSHGPKIHVTASFGISLYDGKTSTVEETLNRADNALYQAKHTGKN 347

Query: 254 RVV 256
           +VV
Sbjct: 348 KVV 350


>gi|295699042|ref|YP_003606935.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
 gi|295438255|gb|ADG17424.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
          Length = 371

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 90/180 (50%), Gaps = 21/180 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ QL   D L+GL N   F   L         Y   ++ +F DID FK IND+ GH +
Sbjct: 190 ERLKQLGMTDSLTGLANRRYFDERLREELMRAVRYRAPVACLFIDIDGFKSINDSHGHQI 249

Query: 151 GDKVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           GD+ +A ++    Q V +  T   V R GGEEF AA L     +A  +A  +R  +EN  
Sbjct: 250 GDRALAAVAACVRQQVRLGDT---VARYGGEEF-AALLQGDRSDALTVAERVRLAVENLD 305

Query: 208 INISSGPSIHITISAGIAER-CHKEPI------STIIYRADQALYVAKKSGRNRVVCFSD 260
           +    G  I +++S G+A R     P         ++  AD+A+Y AK++GRNR+   +D
Sbjct: 306 VRDEHGERIALSVSIGVAARVVAGSPADAMSLGQAMMDEADRAMYQAKRNGRNRIEAQAD 365


>gi|89094829|ref|ZP_01167762.1| GGDEF protein [Oceanospirillum sp. MED92]
 gi|89080884|gb|EAR60123.1| GGDEF protein [Oceanospirillum sp. MED92]
          Length = 323

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 111/222 (50%), Gaps = 23/222 (10%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGS--ILKE--LFISYNRISQLS--RIDCLSG 111
           F G +YIL++ ++  ++   I L+ G +S S  IL E    I  N++S L     D L+G
Sbjct: 95  FKGDDYILLD-ITKDVLPRRIILIRGKVSSSDLILVEGVYGIYANQVSLLDSKERDNLTG 153

Query: 112 LLNHSAFISSLGS-----YNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           L N      +L        N KL+      +V  DID+FK+IND FGH  GD+V+   +D
Sbjct: 154 LPNRQTMEFTLNDVVTFHRNNKLNPIKPSWMVVLDIDHFKKINDTFGHLYGDEVLLHFAD 213

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            L   F    F+ R GGEEF A    ++ +EA  +     + +++        PS  +T+
Sbjct: 214 LLKKSFRHTDFLFRYGGEEFVAIVNNANPEEAQQILERFHQAVQDYDF-----PSGKVTV 268

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           S G  +     P   +   AD+ALY AK +GRN +V F D++
Sbjct: 269 SIGYTQVDPVTPPLLLFEHADRALYHAKHNGRNMIVNFEDMD 310


>gi|94310810|ref|YP_584020.1| diguanylate cyclase [Cupriavidus metallidurans CH34]
 gi|93354662|gb|ABF08751.1| conserved hypothetical protein (contains GGDEF domain) [Cupriavidus
           metallidurans CH34]
          Length = 586

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 100/198 (50%), Gaps = 17/198 (8%)

Query: 75  SITISLLLGYISGSILKELFISY----NRISQLSRIDCLSGLLNHSAFISSLG---SYNE 127
           ++ + LLL + + +I+  LF  Y      +  L+  D L+GL N   F S      ++ +
Sbjct: 372 AVALGLLLCF-TLAIVHTLFGHYIARGEALRTLAETDALTGLANRRVFASRFADAYAWCK 430

Query: 128 K----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
           +    +S++  DID FK+IND +GH  GD V+  L+D L           RLGGEEFA  
Sbjct: 431 RDAVPVSLIMLDIDRFKKINDRWGHASGDVVLRTLADALRANVRNVDLPARLGGEEFAVL 490

Query: 184 ALGSSEQEAAILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEP--ISTIIY 238
              +   +AA LA  LR  ++      ++     SI  T S G+A+    EP  + +++ 
Sbjct: 491 LPRTGIADAANLAEKLRLALQALVCEPVDSDDTASIRFTASFGVAQIAPDEPGNLDSLLM 550

Query: 239 RADQALYVAKKSGRNRVV 256
            ADQ LY AK  GRN+VV
Sbjct: 551 VADQRLYAAKAGGRNKVV 568


>gi|315180273|gb|ADT87187.1| GGDEF family protein [Vibrio furnissii NCTC 11218]
          Length = 336

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 82/164 (50%), Gaps = 8/164 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           N +S L+  D L+G  N  +  S+   +      N  L ++  D+DYFKQ+ND FGH  G
Sbjct: 157 NSLSYLASRDSLTGAHNRLSLSSAFNHFEQHKDDNSSLCLLIIDLDYFKQVNDEFGHDTG 216

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DKV+   +  L  V G      R+GGEEF          +A  +   LR I+     N  
Sbjct: 217 DKVLIETTQLLAQVVGDENLF-RIGGEEFCVTLFDQGLTQAERVGERLRGIVGQHLYNYR 275

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   I +T+S GI E    + +S ++  AD  LY AKK+GRN+V
Sbjct: 276 N-QRIALTLSVGICEYRDGDNLSDLLKLADVELYRAKKNGRNQV 318


>gi|254502389|ref|ZP_05114540.1| hypothetical protein SADFL11_2428 [Labrenzia alexandrii DFL-11]
 gi|222438460|gb|EEE45139.1| hypothetical protein SADFL11_2428 [Labrenzia alexandrii DFL-11]
          Length = 729

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 89/165 (53%), Gaps = 10/165 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI QL+  D L+GL N    ++ +       G  +   ++ + D+D+FK +ND  GH  G
Sbjct: 295 RIHQLAYFDTLTGLANRDGTLAHIRSCLCGPGGEDRIFALFYIDLDHFKAVNDKRGHATG 354

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+A  + +L  V  T +F+GRLGG+EFAA     ++QEA  + +DL +      I++ 
Sbjct: 355 DRVLAIAAQRLQSVCPTDVFLGRLGGDEFAAFCPVKTKQEAQAV-SDLFQAALLEPIDV- 412

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           SG    + +S GIA    H      ++ RAD A+Y AK +G   V
Sbjct: 413 SGEQFALGLSVGIALAPYHAREADALLSRADMAMYQAKATGAGSV 457


>gi|308050452|ref|YP_003914018.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
 gi|307632642|gb|ADN76944.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
          Length = 389

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 10/165 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
            ++  L+  D L+GL N   F      Y          L+++  DID+FK+IND FGHP 
Sbjct: 216 EKLRALALTDPLTGLSNRRHFFDYSEPYLVRALEQGGGLALILMDIDHFKEINDRFGHPF 275

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+     +LV +        R+GGEEFA      ++Q    +A  L + +  +Q   
Sbjct: 276 GDRVLGQFGQRLVNLVEEEALAARIGGEEFALLMPLRTDQCVQEVAECLCRQVGWTQ--T 333

Query: 211 SSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             G  + + +S G  A R +++ ++ +  RAD+ALY AK  GRNR
Sbjct: 334 EQGQEVRVAVSVGATAWRGNQDRLTDMYLRADKALYQAKAEGRNR 378


>gi|126731499|ref|ZP_01747305.1| two component diguanylate cyclase [Sagittula stellata E-37]
 gi|126708035|gb|EBA07095.1| two component diguanylate cyclase [Sagittula stellata E-37]
          Length = 507

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 11/160 (6%)

Query: 107 DCLSGLLNHS---AFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N       IS L    E+     +++  D+DYFKQ+ND++GH  GD V+  L+
Sbjct: 296 DPLTGLYNRRYALPHISRLADRAERSRRPYALLLADLDYFKQVNDDYGHAAGDAVLVTLA 355

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +L         + R GGEEF  A   +    A + A  L  ++  + I++  G  I +T
Sbjct: 356 QRLTDNLRAADLIARWGGEEFLVAMPDTDRTAARLTAGRLCSLMAKNPISLPDGRRIIVT 415

Query: 220 ISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +S G+A    R  + P+  +I  AD ALY AK  GRN VV
Sbjct: 416 LSIGVAIGVSRSAETPVD-LISSADSALYAAKNGGRNTVV 454


>gi|239906295|ref|YP_002953036.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239796161|dbj|BAH75150.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 368

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 85/169 (50%), Gaps = 12/169 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISS----LGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL N   F       LG        LS++  DID+FK +ND +GH  GD V
Sbjct: 194 RLAASDPLTGLANRRGFFEGAARMLGMARRCGTPLSMIMLDIDHFKAVNDAYGHDAGDAV 253

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++ +L          GR+GGEEFA    G+       LA  LR  +E+  +      
Sbjct: 254 LRAVAGRLRESLRVSDLAGRVGGEEFAVLCPGTDLAGGVELAERLRLALEDMVVTADC-R 312

Query: 215 SIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++ +T S G+A+ C  +     S  + RAD+ALY AK+ GRNRV   SD
Sbjct: 313 AVKVTASFGVAQ-CRDDRDAAPSACLTRADRALYAAKRGGRNRVCLESD 360


>gi|188533209|ref|YP_001907006.1| hypothetical protein ETA_10630 [Erwinia tasmaniensis Et1/99]
 gi|188028251|emb|CAO96109.1| Putative exported protein [Erwinia tasmaniensis Et1/99]
          Length = 524

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 9/167 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+   ++ D ++GLLN     + L    S  ++ +++  DID FK++ND FGH VGDKVI
Sbjct: 360 RLKSETQTDPMTGLLNRRGLYAVLDYFLSARQEFAVLALDIDRFKRVNDTFGHAVGDKVI 419

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +++QL         + R GGEEF     G+    A ++A  +R+ IE  QI + +   
Sbjct: 420 KTVAEQLAKTARRSDIICRNGGEEFLMILPGADRDIALMIAERVREHIE--QIRLEAVG- 476

Query: 216 IHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            H+T+S GI+      +  +     +AD ALY AK +GRN V+   D
Sbjct: 477 -HVTVSVGISFWAPDDEADMHQTFVQADDALYQAKNAGRNCVIVAQD 522


>gi|163784749|ref|ZP_02179554.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879983|gb|EDP73682.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 393

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 12/167 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
           +R+ QL+  D L+G+ N   F+  L         YN  +S++  DID FK+IND +GH +
Sbjct: 231 DRLKQLAETDELTGIYNRRKFMELLKKETEKSKRYNNNISLLLIDIDDFKKINDTYGHEI 290

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+   S  +           R GGEEF      +  + A IL   +  ++ N + + 
Sbjct: 291 GDFVLTLFSKLVSKNIRETDIFARWGGEEFVILTF-TDLRNAKILGEKICNVVSNFKFDD 349

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                  IT+S GIA     E I++ I RAD+ +Y AK+SG+N+V  
Sbjct: 350 LD----KITVSIGIASYKKDEDINSFISRADKLMYKAKQSGKNKVAT 392


>gi|126698781|ref|YP_001087678.1| putative signaling protein [Clostridium difficile 630]
 gi|255100200|ref|ZP_05329177.1| putative signaling protein [Clostridium difficile QCD-63q42]
 gi|115250218|emb|CAJ68039.1| putative diguanylate kinase signaling protein [Clostridium
           difficile]
          Length = 572

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 81/153 (52%), Gaps = 10/153 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ + N  +F      Y EK    ++V  DID FK INDN+GH  GD VI  +++ + 
Sbjct: 425 DGLTNVYNRKSFDIMYEKYREKDDNFALVMIDIDNFKLINDNYGHKFGDTVIKGITNTIC 484

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
           V+      V R GGEEF+      S +E A + + +R  I N + N      + +TISAG
Sbjct: 485 VMLEQDDKVFRYGGEEFSVLIRNKSGEEVADIIDSIRVAIANKKWN----DDVTVTISAG 540

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +A   H      ++  AD+ LY AK+ GRN+VV
Sbjct: 541 VA---HISDSKDVLEEADKNLYKAKQLGRNKVV 570


>gi|87118683|ref|ZP_01074582.1| diguanylate cyclase (GGDEF domain) [Marinomonas sp. MED121]
 gi|86166317|gb|EAQ67583.1| diguanylate cyclase (GGDEF domain) [Marinomonas sp. MED121]
          Length = 419

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 10/163 (6%)

Query: 102 QLSRIDCLSGLLNHSAF----ISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+ + N  +F    +  L  Y++   +LSI+ FD+D+FK +ND +GH  GD V
Sbjct: 230 EMATKDKLTNIYNRRSFEARLLQDLKQYDKFQTELSIILFDVDHFKFVNDTYGHQAGDSV 289

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  L++       +   V R GGEEF      + +  + ++A  LR  IEN+  +  S  
Sbjct: 290 LTLLAEIAQQTVRSNDIVARYGGEEFIILLPNTGKNGSQVIAEKLRSAIENAAFDTQS-Y 348

Query: 215 SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I ITIS G+A         +  +I  AD ALY AK +GRN+V
Sbjct: 349 KIQITISLGVACISDVQHPNLDNLIKSADDALYYAKHNGRNQV 391


>gi|152968102|ref|YP_001363886.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216]
 gi|151362619|gb|ABS05622.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216]
          Length = 530

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 86/168 (51%), Gaps = 10/168 (5%)

Query: 99  RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R  + +R D L+GL N           +    + +  LS V  D+D+FK +ND + H VG
Sbjct: 359 RYREEARRDPLTGLRNRLFVDERLPLLVDEFRAGDRHLSAVLLDLDHFKSVNDGYSHEVG 418

Query: 152 DKVIAFLSDQLVVVFG--TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           D V+  ++  L    G     F  RLGGEEF  A +    Q+A  LA  +R  +     +
Sbjct: 419 DAVLRAVAAVLEEAAGHAAQSFAARLGGEEFLVALVTDDAQQAVRLAEGVRARVRAHDWS 478

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            ++ P   +T+SAG+A     +  ++++ RAD+ LY AK +GR+RVV 
Sbjct: 479 ATT-PGRGVTVSAGVATLRPGDDKTSLLARADERLYAAKAAGRDRVVA 525


>gi|330980266|gb|EGH78407.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 308

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 8/170 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y   +Q +  D L+   N  A   SL         + + LS++  DID+FK++ND +GH 
Sbjct: 140 YRIATQTALRDPLTSTGNRIAMDQSLAREIEISRRHKQPLSLLMLDIDHFKKVNDEYGHH 199

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  L         V R GGEEF      +    A ++   L + + N +  
Sbjct: 200 TGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGADSAELIGQRLCQAVRNLEFR 259

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             S P++ +T+S G +     EP  +++ RAD ALYVAK+ GRNR+   S
Sbjct: 260 ELS-PALTMTVSLGCSTLLPTEPADSLLRRADNALYVAKREGRNRIAMAS 308


>gi|313680697|ref|YP_004058436.1| diguanylate cyclase [Oceanithermus profundus DSM 14977]
 gi|313153412|gb|ADR37263.1| diguanylate cyclase [Oceanithermus profundus DSM 14977]
          Length = 372

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 99/197 (50%), Gaps = 18/197 (9%)

Query: 79  SLLLGYISGSILKELFISYNRISQ-------LSRIDCLSGLLNHS-------AFISSLGS 124
           +LL  YISG +   L  +++RI +       L+ +D L+ L N              +  
Sbjct: 174 ALLQFYISGIVYAMLLYAFSRIEESYAENRMLAYLDHLTQLPNRRYGEAVLVHLFRQMRE 233

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           +    S++  D+D FK++ND  GH VGD+V+   +  +         V R GGEEF    
Sbjct: 234 HGGTFSVIMLDLDGFKKVNDRHGHDVGDRVLKRCALLIQRYLPRGARVIRWGGEEFLIVL 293

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
               E+ A  +A ++R+ +E S  +   GP   +  S G+A     + + T+I RADQA+
Sbjct: 294 PDLEERAALAVAEEVRRGLERSP-HERVGP---VLASLGVAGCRPGDTLDTLIQRADQAM 349

Query: 245 YVAKKSGRNRVVCFSDI 261
           Y+AK++G NRVV FS +
Sbjct: 350 YLAKQNGGNRVVAFSQL 366


>gi|171060573|ref|YP_001792922.1| diguanylate cyclase [Leptothrix cholodnii SP-6]
 gi|170778018|gb|ACB36157.1| diguanylate cyclase [Leptothrix cholodnii SP-6]
          Length = 370

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 8/167 (4%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148
           ++ RI QL+  D L+GL N  A + SL           + +++V  D+D+FK IND  GH
Sbjct: 202 AFERIRQLATRDDLTGLPNRRALMDSLVNETARQARLGQPIALVAIDLDHFKAINDEHGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+   +++ +     P  + R GGEEF      ++  +A      LR+ +  +  
Sbjct: 262 KAGDAVLRGFAERALTELRGPDVLARWGGEEFLLLLPDTTVTQALSCVQRLRERLVLTPF 321

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +    P + +T SAG+        I   I RAD+A+Y AK +GR+RV
Sbjct: 322 D-EVQPGLRVTFSAGVTRCLGGGDIDAAIERADRAMYRAKAAGRDRV 367


>gi|168213529|ref|ZP_02639154.1| GGDEF/HD domain protein [Clostridium perfringens CPE str. F4969]
 gi|170714917|gb|EDT27099.1| GGDEF/HD domain protein [Clostridium perfringens CPE str. F4969]
          Length = 564

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 9/161 (5%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ NH  F   L          NEKLS++F DIDYFK  ND +GH  GD+ +  + 
Sbjct: 197 DGLTGVYNHRYFYDKLREKMHISEVENEKLSLIFMDIDYFKHYNDLYGHQKGDEALKKIG 256

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHI 218
             L  +      V R GGEEFA     +SE+EA  +A  +R  +E +      + P+ + 
Sbjct: 257 KLLKNIARENDLVARYGGEEFAIILPNTSEEEATKIAERIRNKVEKTYFEGQENQPNANF 316

Query: 219 TISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCF 258
           T+S GIA    K      + + AD ALY AK   +NRV  +
Sbjct: 317 TVSVGIAVFPDKAKSELELVKCADDALYRAKFFHKNRVETY 357


>gi|291279090|ref|YP_003495925.1| hypothetical protein DEFDS_0689 [Deferribacter desulfuricans SSM1]
 gi|290753792|dbj|BAI80169.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 315

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 109/243 (44%), Gaps = 32/243 (13%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVII-----SITISL 80
           TF+++ S F+ I +   I +    LFY+ ++        ++   SL+I+     SI I L
Sbjct: 83  TFLVFDSKFYVIKVILAILLILFDLFYLNIS--------ILSTFSLMILYSLFFSIFIKL 134

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVF 133
           L+  +              I +LS  D L+GLLN   F+            Y +  +++ 
Sbjct: 135 LIDRLE-----------EEIDELSITDDLTGLLNQKGFLKKFEEEYYRSVRYKKNFTVIM 183

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D D  K++ND +GH  G KVI F++D++        F  R GG+EF    + +      
Sbjct: 184 LDSDDLKKVNDTYGHKYGTKVILFIADEIKKNIRRTDFACRYGGDEFMICLVETPINNGK 243

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGR 252
           I A  L+  I    +    G   ++T+S G+    H    S  ++   D+ALY AK  G+
Sbjct: 244 IFAERLKNNIAMKPVFTDKGRGFNVTVSVGVVGYPHTSEKSFELLDLVDKALYEAKNKGK 303

Query: 253 NRV 255
           NRV
Sbjct: 304 NRV 306


>gi|145298526|ref|YP_001141367.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851298|gb|ABO89619.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 392

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 85/162 (52%), Gaps = 17/162 (10%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYN--EKLSIVFFDIDYFKQINDNFGHPVGDKVI-- 155
           + Q +  D L+GLLN   F+  +G     E  ++   D+D FKQ+ND  GH +GD+V+  
Sbjct: 238 LRQQASHDSLTGLLNRRGFMEQMGDRRIGEFGALAVLDLDDFKQVNDRHGHEIGDRVLEA 297

Query: 156 --AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
             A+L  Q  +V        R GGEEF    L   E E A  A   R + + + +++S  
Sbjct: 298 VGAYLGAQPELV------ASRFGGEEFVL--LLPREDEQAQQARCERILQDLAALDLSG- 348

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             IHIT+S G+A   H     T+  +AD ALY AK+ G+NR+
Sbjct: 349 --IHITVSMGLARCQHDWHFDTLFSQADGALYQAKREGKNRI 388


>gi|182678198|ref|YP_001832344.1| response regulator receiver modulated diguanylate cyclase
           [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634081|gb|ACB94855.1| response regulator receiver modulated diguanylate cyclase
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 457

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 85/162 (52%), Gaps = 12/162 (7%)

Query: 106 IDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+GL N     + L       G+ +   S++  DID+FK IND  GH  GD+++ + 
Sbjct: 291 IDPLTGLHNRRFLEAQLHRLQQEHGTASTVFSLMVLDIDHFKAINDRHGHDAGDQILKYF 350

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIH 217
           + ++  V     +  R+GGEEF     G+    A  +A  +R  IE     +S +   I 
Sbjct: 351 AARVKQVVRAGDWPCRIGGEEFVVLMPGAGLDFAKQIAERVRYAIEKDGFVLSGTRERIP 410

Query: 218 ITISAGIAERCHK----EPISTIIYRADQALYVAKKSGRNRV 255
           +T+S G+AE   +    EP   +  RAD+ALY AKK+GRNRV
Sbjct: 411 VTVSIGLAEAVQQGSGAEPFEALFRRADRALYRAKKNGRNRV 452


>gi|74312120|ref|YP_310539.1| hypothetical protein SSON_1606 [Shigella sonnei Ss046]
 gi|73855597|gb|AAZ88304.1| hypothetical protein SSON_1606 [Shigella sonnei Ss046]
 gi|323164364|gb|EFZ50169.1| hypothetical protein SS53G_5359 [Shigella sonnei 53G]
          Length = 159

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 72/132 (54%), Gaps = 6/132 (4%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+++  DIDYFK INDN+GH  GDKV++  +  +  + G    V R+GGEEFA A    +
Sbjct: 19  LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVN 78

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQA 243
             +  ++A  +RK +E          ++++T+S G+       R   +  + ++  AD  
Sbjct: 79  PVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSIGVGSGRASYRTLTDDFNKLMVEADTC 137

Query: 244 LYVAKKSGRNRV 255
           LY +KK GRNR 
Sbjct: 138 LYRSKKDGRNRT 149


>gi|117926802|ref|YP_867419.1| response regulator receiver modulated diguanylate cyclase
           [Magnetococcus sp. MC-1]
 gi|117610558|gb|ABK46013.1| response regulator receiver modulated diguanylate cyclase
           [Magnetococcus sp. MC-1]
          Length = 310

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 90/168 (53%), Gaps = 13/168 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + QL+ +D L+G+ N   F        S    Y    S++  DIDYFK+ ND +GH  GD
Sbjct: 140 LKQLAIMDGLTGIANRRRFDQFVDYEWSRSLRYQHNFSLIMLDIDYFKRFNDCYGHAQGD 199

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  ++  +      PM    R GGEEFA     +S + A  +AN + + ++  +I + 
Sbjct: 200 QCLKQVAYAISQAMPRPMDLAARYGGEEFACVLPETSREGAVTVANRVLQGVQELRIAHA 259

Query: 211 SSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S  + H+T+S GIA    R    P +T++ RADQALY AK SGRN++
Sbjct: 260 HSNVANHVTVSVGIASMVPRSEDIP-TTLLARADQALYHAKNSGRNQL 306


>gi|257876426|ref|ZP_05656079.1| membrane-anchored GGDEF domain-containing protein [Enterococcus
           casseliflavus EC20]
 gi|257810592|gb|EEV39412.1| membrane-anchored GGDEF domain-containing protein [Enterococcus
           casseliflavus EC20]
          Length = 367

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 78/139 (56%), Gaps = 6/139 (4%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF--GTP---MFVGRLGGEEF 180
            ++L +V  D+D+FK+IND+ GH +G++ ++F S++L+      +P   + V R GGEEF
Sbjct: 230 KDQLVVVMMDLDHFKRINDHHGHQIGNQALSFFSEKLMTFLYQKSPSHLVEVYRYGGEEF 289

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                 ++      +  +    + N Q+ + +   + +  SAGI+E      IS   Y+A
Sbjct: 290 LVLFKENTSDAVKKIIEEFHLFLSNEQLKLETA-QLTLYFSAGISEAASALDISETFYQA 348

Query: 241 DQALYVAKKSGRNRVVCFS 259
           DQALY AK+ GRNR + FS
Sbjct: 349 DQALYEAKRKGRNRTIIFS 367


>gi|242238178|ref|YP_002986359.1| diguanylate cyclase [Dickeya dadantii Ech703]
 gi|242130235|gb|ACS84537.1| diguanylate cyclase [Dickeya dadantii Ech703]
          Length = 547

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 85/166 (51%), Gaps = 10/166 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-YNE--KLSIVFFDIDYFKQINDNFGHPVGDK 153
           + RI +LS  +  +  LN      S+    NE  K++++  DID+FKQIND FGH  GD 
Sbjct: 380 HKRIGRLSS-EAHTDPLNRRGMQESMEELRNEYKKIAVIAVDIDHFKQINDTFGHDTGDD 438

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           VI  LS      F     + R+GGEEF     G+    A I+A  LR    N+  N S  
Sbjct: 439 VIRKLSQLFRQNFRKTDLICRIGGEEFLILLPGADIHIATIIAERLR----NNVANASYL 494

Query: 214 PSIH-ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           P+ H +TIS G+        P+   I  AD ALY AKK GRN+V+ 
Sbjct: 495 PNAHPVTISIGVTTFNPQTSPLDKAIKIADNALYKAKKGGRNKVMV 540


>gi|206577141|ref|YP_002237697.1| diguanylate cyclase [Klebsiella pneumoniae 342]
 gi|206566199|gb|ACI07975.1| diguanylate cyclase [Klebsiella pneumoniae 342]
          Length = 559

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 106/200 (53%), Gaps = 11/200 (5%)

Query: 69  LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------S 120
           L+L+ +  T+ LLL ++    +++ + +    +   +  D L+ LLN  A         S
Sbjct: 357 LTLMWVLFTLMLLLSWLVIRRMVRNMSVLQTSLEWQAWHDALTRLLNRGALFEQAMAVAS 416

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           +       L+++  D+D+FK+IND +GH  GD+V++ ++  L         +GR+GGEEF
Sbjct: 417 ACQRSGRPLAVIQLDLDHFKRINDRYGHQAGDRVLSTVASTLASTVREGDLLGRVGGEEF 476

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                 ++ Q+A  +A  LR  I+  ++ + +  ++ ++ S G+  +E   +     +  
Sbjct: 477 CVVLPNTTLQDAVAVAERLRLRIQGREVFLHNNVTLRVSASLGVSTSEEQGEYQFEALQS 536

Query: 239 RADQALYVAKKSGRNRVVCF 258
            AD+ LY+AK++GRN+ VCF
Sbjct: 537 VADRRLYLAKQNGRNQ-VCF 555


>gi|160941315|ref|ZP_02088652.1| hypothetical protein CLOBOL_06208 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435876|gb|EDP13643.1| hypothetical protein CLOBOL_06208 [Clostridium bolteae ATCC
           BAA-613]
          Length = 522

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 15/169 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYN--EKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            +I   S  D L+GL N   F   + +      +S+++ D+D FK++ND +GH VGD V+
Sbjct: 360 KQIRHSSNTDFLTGLYNRRCFYQYIHNNRGGRTVSLMYIDLDRFKEVNDTYGHKVGDAVL 419

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-----EQEAAILANDLRKIIENSQINI 210
              +D L  +F    FV RLGG+EF    LG       EQEA     ++R         +
Sbjct: 420 VHTADVLRRLFRDD-FVARLGGDEFLVVRLGKCSMDQMEQEAEAFLKEMRTAF------L 472

Query: 211 SSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           ++  ++ ++ S GIA+       I  ++ R+DQALY AKK+GR+R   +
Sbjct: 473 AAEQTVSLSASVGIAQSSDSMVDIDALLQRSDQALYQAKKAGRSRYCVY 521


>gi|146305758|ref|YP_001186223.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas mendocina ymp]
 gi|145573959|gb|ABP83491.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas mendocina ymp]
          Length = 540

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 85/163 (52%), Gaps = 10/163 (6%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +  L           + L+    DID+FK++ND +GHP+GD+VI  L+
Sbjct: 377 DSLTGLYNHTHTLQLLEDACFRARRDEQPLAFAMLDIDHFKKVNDTYGHPMGDRVIKSLA 436

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L         +GR GGEEFA     + EQ A  +  ++R+    ++I+  + P  +  
Sbjct: 437 LFLKQRLRKTDHIGRYGGEEFAVVLPDTDEQSALRVLEEIRQRF--AEIHYPAQPQDLSC 494

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           T S GIA        + +  RAD+ALY AK  GRNRV  ++ +
Sbjct: 495 TFSCGIAMLQPGLDGNALSKRADEALYTAKHGGRNRVELYNPL 537


>gi|85708037|ref|ZP_01039103.1| hypothetical protein NAP1_02340 [Erythrobacter sp. NAP1]
 gi|85689571|gb|EAQ29574.1| hypothetical protein NAP1_02340 [Erythrobacter sp. NAP1]
          Length = 410

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 84/168 (50%), Gaps = 14/168 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
           N + + S  D L+GL N +AF  ++G       + ++  S+V  DID+FKQ+ND +GH  
Sbjct: 202 NSLRESSDKDPLTGLNNRAAFEEAMGRIIPRAHTEDKPFSLVVADIDHFKQVNDIWGHQA 261

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI---IENSQ 207
           GD  I+     +          GR+GGEEF  A      + A  LA+ +R     +E+  
Sbjct: 262 GDSAISGFGKLIQETIRGCDTAGRIGGEEFCVAVWNCPNEPAERLADRIRTAFARLEHDG 321

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +N      I +T S G+A     E    +  RAD ALY AK +GRNRV
Sbjct: 322 LN----DDIRLTASFGVATVREGESYERLFARADAALYRAKSNGRNRV 365


>gi|258655117|ref|YP_003204273.1| diguanylate cyclase [Nakamurella multipartita DSM 44233]
 gi|258558342|gb|ACV81284.1| diguanylate cyclase [Nakamurella multipartita DSM 44233]
          Length = 349

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 88/165 (53%), Gaps = 14/165 (8%)

Query: 101 SQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +QLS  D L+GLLN    ++ L    G+ N   +++  DID+FK IND +GH VGD V+ 
Sbjct: 181 AQLSMTDPLTGLLNRRGMLARLLGTTGTTNRYCAVLVLDIDHFKTINDLYGHAVGDDVLR 240

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +   L+    +     RLGGEEFA  AL ++  EA ILA  LR     S +   +  S 
Sbjct: 241 AVGQGLLRATRSDDVAVRLGGEEFAVLAL-NTPAEARILAERLRV----SAMQWMAPWSG 295

Query: 217 HITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            I++   + E         E ++ ++  AD+ LY AK +GRNRVV
Sbjct: 296 TISVGGVVVELLNSDELTAELVNCLMEEADRYLYQAKHAGRNRVV 340


>gi|108763771|ref|YP_633352.1| FHA/GGDEF domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108467651|gb|ABF92836.1| FHA/GGDEF domain protein [Myxococcus xanthus DK 1622]
          Length = 307

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 76/130 (58%), Gaps = 5/130 (3%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS+V FD+D+FK+IND +GHP GD V+  ++ ++     T   + R GGEEFA     S+
Sbjct: 172 LSLVLFDVDHFKKINDAYGHPAGDYVLTRIAQRVSDTVRTEDLLARYGGEEFALMLRESA 231

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALY 245
           E +A   A   R  ++ +   + SG  I +TIS G+A   +    +P   +I  AD+ LY
Sbjct: 232 EDQALACAERCRYAVDKADF-VFSGTPIKVTISLGVATLLDSDFSQP-EDLIAAADKYLY 289

Query: 246 VAKKSGRNRV 255
            AK++GRNRV
Sbjct: 290 RAKRAGRNRV 299


>gi|71906051|ref|YP_283638.1| PAS:GGDEF [Dechloromonas aromatica RCB]
 gi|71845672|gb|AAZ45168.1| PAS:GGDEF protein [Dechloromonas aromatica RCB]
          Length = 317

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 94/178 (52%), Gaps = 12/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           +++F    ++   S  D L+G+ N   F  ++ +         E LS++ FD+D+FK  N
Sbjct: 141 EDVFELNRKLEAWSNQDGLTGIANRRLFDHTMAAEWARGKRSREPLSLLMFDVDHFKGYN 200

Query: 144 DNFGHPVGDKVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           D++GH  GD+ +  L+ ++  + +  T +F  R GGEEFA     +    A  +A   R+
Sbjct: 201 DHYGHVKGDECLIRLAREVSQMPLRSTDLFA-RYGGEEFAFVLPQTPSDAAQQIAEKCRE 259

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVC 257
           ++   +I  +  P+  ITIS G+      E  S  T+I RAD  LY AK++GRNRV C
Sbjct: 260 VVAALKIPHALSPAGTITISVGVCTMLPGEESSYMTLIERADDKLYRAKRNGRNRVCC 317


>gi|37679342|ref|NP_933951.1| hypothetical protein VV1158 [Vibrio vulnificus YJ016]
 gi|320156916|ref|YP_004189295.1| two component response regulator [Vibrio vulnificus MO6-24/O]
 gi|37198085|dbj|BAC93922.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
 gi|319932228|gb|ADV87092.1| two component response regulator [Vibrio vulnificus MO6-24/O]
          Length = 304

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 95/180 (52%), Gaps = 12/180 (6%)

Query: 90  LKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           L+   I  N ++ +++  D L+GL+N        G  +   +++ FDID FK IND +GH
Sbjct: 130 LQRALIEQNEQLKRMATTDALTGLVNRRYLADMAGKVSGNFALILFDIDDFKTINDQYGH 189

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+V+  +++    V G   +  R GGEEF            A  A DL   I++ + 
Sbjct: 190 HVGDEVLVRIAEITRRVIGQHGYCARWGGEEFLILLPNFD----AKRAYDLAACIQD-EF 244

Query: 209 NISSGP--SIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           N S G   + H T S G+A  C++  +S   +I +AD A+Y  KKSG+NRVV  S +E+ 
Sbjct: 245 NESKGALGAYHFTASFGVA--CNQGALSFHHVIRQADAAMYQGKKSGKNRVVSSSAMESR 302


>gi|323491761|ref|ZP_08096938.1| GGDEF domain-containing protein [Vibrio brasiliensis LMG 20546]
 gi|323314017|gb|EGA67104.1| GGDEF domain-containing protein [Vibrio brasiliensis LMG 20546]
          Length = 474

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           N++  L+  D L+G  N  +F       +S+   +   L++V  DID+FKQ+ND FGH  
Sbjct: 305 NKLRTLAATDALTGAFNRRSFQEQTERALSTCARWRAPLTVVLLDIDHFKQVNDQFGHAA 364

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  L   +         VGRLGGEEF      +       +A  LR+ +E  +I  
Sbjct: 365 GDEVLIALVRHIQQSTRNMDVVGRLGGEEFGLVLPNTDSSLGFEIAERLRREVEAMEIYH 424

Query: 211 SSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVV 256
              P + ITIS G+      +   P+  ++ R D  LY AK  GRN +V
Sbjct: 425 EDQP-LKITISLGMTTLSFTQLATPLEDVLARVDGYLYEAKSLGRNCIV 472


>gi|312958185|ref|ZP_07772708.1| diguanylate cyclase [Pseudomonas fluorescens WH6]
 gi|311287616|gb|EFQ66174.1| diguanylate cyclase [Pseudomonas fluorescens WH6]
          Length = 687

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 87/161 (54%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q + ID L+GL N +A+   L     +++++   LS+   D+D+FK+IND +GH  GDKV
Sbjct: 525 QKALIDPLTGLPNRAAWSERLDQEVNAWHQRGNSLSLAMLDLDHFKRINDGYGHLAGDKV 584

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +++ L        F+ R GGEEF      S   +A  +   LR  IE    +    P
Sbjct: 585 LKIIANVLSKRLRPTDFIARFGGEEFVLLMPDSPLADALAVGGVLRNAIEACPFHFKGEP 644

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT+S G+A+    E     + RAD+ALY AK +GRN+V
Sbjct: 645 -VTITVSMGVAQLQSGERSELALKRADEALYRAKAAGRNQV 684


>gi|27366393|ref|NP_761921.1| Two component response regulator [Vibrio vulnificus CMCP6]
 gi|27362594|gb|AAO11448.1| Two component response regulator [Vibrio vulnificus CMCP6]
          Length = 304

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 95/180 (52%), Gaps = 12/180 (6%)

Query: 90  LKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           L+   I  N ++ +++  D L+GL+N        G  +   +++ FDID FK IND +GH
Sbjct: 130 LQRALIEQNEQLKRMATTDALTGLVNRRYLADMAGKVSGNFALILFDIDDFKTINDQYGH 189

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+V+  +++    V G   +  R GGEEF            A  A DL   I++ + 
Sbjct: 190 HVGDEVLVRIAEITRRVIGQHGYCARWGGEEFLILLPNFD----AKRAYDLAACIQD-EF 244

Query: 209 NISSGP--SIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           N S G   + H T S G+A  C++  +S   +I +AD A+Y  KKSG+NRVV  S +E+ 
Sbjct: 245 NESKGTLGAYHFTASFGVA--CNQGALSFHHVIRQADAAMYQGKKSGKNRVVSSSAMESR 302


>gi|71909479|ref|YP_287066.1| diguanylate cyclase [Dechloromonas aromatica RCB]
 gi|71849100|gb|AAZ48596.1| diguanylate cyclase [Dechloromonas aromatica RCB]
          Length = 517

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 90/179 (50%), Gaps = 8/179 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           I+ S L +L    +  S L+R D L+  LN           +SS+   +  LSI   D+D
Sbjct: 338 ITESELMQLHQELDNASALARHDPLTDALNRKGLDEALAREVSSMRRKDLPLSISLLDVD 397

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK++ND  GH  GD  +  L+D           + R GGEEF      ++ ++      
Sbjct: 398 NFKKLNDRLGHDAGDGALIHLADVTRSNMRPSDTLARYGGEEFVVLMPDTTLEQGIEAMT 457

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            L++ +  + I +S    I IT SAG+A+    E  +  I RADQA+Y+AK+SG+NRV+
Sbjct: 458 RLQRELTKA-IYLSGNEKILITFSAGVAQLAPDETGTDAIRRADQAMYLAKRSGKNRVM 515


>gi|332558859|ref|ZP_08413181.1| response regulator receiver modulated diguanylate cyclase
           [Rhodobacter sphaeroides WS8N]
 gi|332276571|gb|EGJ21886.1| response regulator receiver modulated diguanylate cyclase
           [Rhodobacter sphaeroides WS8N]
          Length = 461

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 13/168 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+ +D L+GL N     + L +        +E+ +++  D+D FK +ND +GH  GD V
Sbjct: 287 RLAVVDPLTGLYNRRYAGAHLAAVAERARAADERFAVMVIDLDRFKSVNDRWGHGAGDAV 346

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSG 213
           +  ++ +L         + R+GGEEF  A       E A  +A  LR+ +E   + +  G
Sbjct: 347 LVAVARRLHANLRPGDLIARIGGEEFLVALPDVPRPEDAHAVAERLREAVEEEPVPLPGG 406

Query: 214 PSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S+ +TIS G+A          EP+  ++ RAD AL +AK +GRN+V 
Sbjct: 407 GSLRVTISVGLALSPDGAGRRAEPVDAVVQRADSALLLAKSAGRNQVT 454


>gi|326316728|ref|YP_004234400.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323373564|gb|ADX45833.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 326

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 82/169 (48%), Gaps = 10/169 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
            RI QLS  D L+G+ N   F   LGS         E L +V  DID+FK  ND++GHP 
Sbjct: 154 ERIYQLSITDSLTGIANRRRFDEMLGSEFARHARSGEPLCVVLIDIDHFKAFNDHYGHPG 213

Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD  +  ++  +      P     R GGEEFA     +   EA+ +   LR+ IE   I 
Sbjct: 214 GDSCLQRVAAAIDTRMRWPCDLAARYGGEEFACILPATGLDEASDMTEGLRRAIEALAIP 273

Query: 210 ISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVV 256
            ++  S  +T S G A   H  ++    ++  AD +LY AK+ GRNR  
Sbjct: 274 HAAAASGRVTASVGAACCLHAAQQTPDGLLEAADASLYRAKREGRNRTA 322


>gi|269961335|ref|ZP_06175700.1| GGDEF family protein [Vibrio harveyi 1DA3]
 gi|269833886|gb|EEZ87980.1| GGDEF family protein [Vibrio harveyi 1DA3]
          Length = 337

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 86/155 (55%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D LS L N  AF + L      N+ +++V  DID+FK  NDN+GH  GD VI  ++ +L 
Sbjct: 181 DGLSNLYNRRAFDNDLQMLIDSNQAMTLVMLDIDHFKAFNDNYGHLFGDTVIKAIARRLQ 240

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH-ITIS 221
                 +   R GGEEFA      S + A   A+ LR++IE  ++ +  SG  +  IT S
Sbjct: 241 QSCRDGISAYRFGGEEFAVIIPNKSLRIARQYADTLRRMIEKLRVRDKRSGTQVQSITAS 300

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+AE    +   +++ +AD+ LY AK+ GRNRV+
Sbjct: 301 FGVAEFEVGDTPESLVNKADKQLYEAKQLGRNRVM 335


>gi|120553435|ref|YP_957786.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120323284|gb|ABM17599.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 461

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 20/163 (12%)

Query: 106 IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+ L N  A+   L         Y   L++   D+D FK+IND++GH  GD+V+  +
Sbjct: 303 TDLLTQLPNREAWQERLSFEYNRWLRYRHPLTVAVLDVDLFKRINDSYGHKAGDRVLQLV 362

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS------S 212
           + ++     +  F+ R GGEEF      +   EA       RK++++ + ++S      S
Sbjct: 363 AREMSTRLRSTDFIARFGGEEFVVLLPETPTDEA-------RKVLDSLREHVSGLPFHFS 415

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G  + IT SAG+      +   ++  RAD+ALY AK  GRNRV
Sbjct: 416 GEPVSITFSAGLTGFQDDDTEESVFDRADRALYQAKDEGRNRV 458


>gi|304396879|ref|ZP_07378759.1| diguanylate cyclase [Pantoea sp. aB]
 gi|304355675|gb|EFM20042.1| diguanylate cyclase [Pantoea sp. aB]
          Length = 473

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 100/194 (51%), Gaps = 14/194 (7%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----N 126
           L + +I IS L+   S   +++L     R++  +  D L+ LL+ S    SL +     +
Sbjct: 270 LGVATIAISPLIVAASMDAIRQL---NQRLALRANYDFLTRLLSRSGLYESLRAEPIFPD 326

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
            K+ ++  D+DYFK INDNFGH  GD V+  ++ ++  V G    V R GGEEF      
Sbjct: 327 RKVGVILLDVDYFKAINDNFGHDAGDSVLEEIARRMQQVIGKEGRVCRFGGEEFVVVLFD 386

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP------ISTIIYRA 240
            +  +   LA  +R+ +   +  +  G +  +T+S G+A     E       I+ +I  A
Sbjct: 387 QNPAKLYFLAESIRQKMAKEKFWL-QGSTATVTVSLGLAHSSAGEATEWHRVINRLISAA 445

Query: 241 DQALYVAKKSGRNR 254
           D+ LY++K++GRN+
Sbjct: 446 DKNLYLSKRNGRNQ 459


>gi|227822405|ref|YP_002826377.1| probable two-component response regulator protein [Sinorhizobium
           fredii NGR234]
 gi|227341406|gb|ACP25624.1| probable two-component response regulator protein [Sinorhizobium
           fredii NGR234]
          Length = 415

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 82/157 (52%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N   F       +       E  SI   DID+FK++ND +GH +GD V+  ++
Sbjct: 249 DYLTGIFNRRHFFMTGPRLVDQYLRRGEGTSIAVLDIDHFKRLNDTYGHEIGDLVLKHVA 308

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +L V+ G    + RLGGEEF     G   ++A      LR  +  S+I ++    + IT
Sbjct: 309 GRLKVLVGDQHLLARLGGEEFGILFDGLGVRDAFAFCERLRAELAKSKI-VADDEELAIT 367

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +S G+A     E     ++ ADQ LY+AK +GRNRV+
Sbjct: 368 VSIGLATIEAPEAFENYLHAADQFLYMAKHAGRNRVI 404


>gi|212637502|ref|YP_002314027.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212558986|gb|ACJ31440.1| GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 397

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 87/172 (50%), Gaps = 19/172 (11%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
            L+  D L+GL +  A  +   S N   S+   DID+FK  ND +GH VGD+V+  ++ +
Sbjct: 225 HLAYRDDLTGLSSRRALNTMALSLNSHYSVAMVDIDHFKSFNDTYGHDVGDQVLQLIASK 284

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI----------NIS 211
           L  V G+   V R GGEEF         +      N+LR II +  I          N S
Sbjct: 285 LTKVKGSGK-VYRYGGEEFTIVFPNRDVEFVLPYLNELRCIIRDYDIVLRNEHRKTSNKS 343

Query: 212 S--------GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S          ++++TIS G+AE   +   +  +  AD+ALY+AKK+GRNRV
Sbjct: 344 SRNTQEDNLSTTVNVTISIGVAEHHGQLTFAQTLKLADKALYIAKKNGRNRV 395


>gi|45657013|ref|YP_001099.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|45600250|gb|AAS69736.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 317

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 100/211 (47%), Gaps = 34/211 (16%)

Query: 82  LGYISGSILKELFISYNRISQLS--------------RIDCLSGLLNHSAF-------IS 120
           L Y++G  + ++  S  +ISQL+                D L+ L N   F       I 
Sbjct: 106 LVYVTGRDITDVIESNRKISQLAVKLKETNDRLFEQASTDPLTKLKNRRMFNEELNNLIH 165

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           +    +  LS++  D D+FK  ND FGH  GDKV+  L+  L   F     + R GGEEF
Sbjct: 166 ACDKESHPLSLLMIDADHFKDYNDKFGHIAGDKVLVELASILTKTFRKKDVLARYGGEEF 225

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--------AERCHKEP 232
            AA   +SE EA  +A  L + +        S     +TIS GI        ++  + E 
Sbjct: 226 IAALPNTSEPEANQIAERLVQTVREFSWEKRS-----VTISVGITTYNFNPTSKSINSEY 280

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +  +I +AD+ALY +K SGR+R+  FS ++N
Sbjct: 281 LLNLIEQADKALYCSKVSGRDRITHFSWVQN 311


>gi|154244236|ref|YP_001415194.1| diguanylate cyclase [Xanthobacter autotrophicus Py2]
 gi|154158321|gb|ABS65537.1| diguanylate cyclase [Xanthobacter autotrophicus Py2]
          Length = 554

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 89/181 (49%), Gaps = 12/181 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           EL     R++ L+R D L+GL N   F        + + G     L++V  D+DYFK  N
Sbjct: 365 ELRTMNGRLASLARTDGLTGLANRRTFDVQFSQDWVRARGD-GAPLTLVMLDVDYFKAFN 423

Query: 144 DNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D  GH  GD+ +  ++  L     GT   V R GGEEF     G+   E    A D+R +
Sbjct: 424 DARGHLSGDEALRGVARMLSAAAAGTKHLVARYGGEEFIVLMSGADLAEGLAFAEDVRGL 483

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260
           +    I   + P   +T S G+A     +  S  T++  AD ALY AK+SGR+RVV  +D
Sbjct: 484 LGEVAIAHPASPRRRLTASFGVASTIPTQEGSPDTLVAAADAALYEAKRSGRDRVVAHAD 543

Query: 261 I 261
           +
Sbjct: 544 L 544


>gi|296445212|ref|ZP_06887172.1| diguanylate cyclase with PAS/PAC sensor [Methylosinus trichosporium
           OB3b]
 gi|296257386|gb|EFH04453.1| diguanylate cyclase with PAS/PAC sensor [Methylosinus trichosporium
           OB3b]
          Length = 502

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 98/188 (52%), Gaps = 16/188 (8%)

Query: 83  GYISGSILKELFISYN-----RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLS 130
           G +SG ++  + IS       R+ +L+  D L+G+ N S F       I     Y   LS
Sbjct: 306 GGVSGVVICGVDISERKAVEARLHRLATTDALTGVANRSHFFARADAEIRRAARYRRPLS 365

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D+FK++ND  GH VGD V+A  +     +      V R GGEEF A    + EQ
Sbjct: 366 VLMVDLDHFKRVNDEHGHAVGDAVLAEFAGLCARMLRAEDLVARYGGEEFVALLPETDEQ 425

Query: 191 EAAILANDLRKIIENSQINI-SSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAK 248
            A  + + LR+     QI   S+G ++ +T+S G+ A    +  I   + RAD+ALY AK
Sbjct: 426 GAVAVGHRLRE--GAMQIRTPSAGSALRLTVSIGVSAVLAGEAAIEAALARADEALYQAK 483

Query: 249 KSGRNRVV 256
            +GR+RVV
Sbjct: 484 AAGRDRVV 491


>gi|218781592|ref|YP_002432910.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762976|gb|ACL05442.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 308

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 7/174 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           + KE      ++ +LS  D L+ L N   F   L +       Y   LS++FFD+D FK+
Sbjct: 128 LWKEREALMEQLKKLSITDGLTNLYNRRHFYRQLSTEANRAERYGRVLSLLFFDVDSFKK 187

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            ND +GH  GD+ +  ++            + R GGEEFA     +S ++A I    LR 
Sbjct: 188 FNDTYGHLAGDEALKSIARATENCLRVADSIFRYGGEEFAVVLPETSGEQAIIAGQRLRN 247

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I+  ++ IS   +  +T+S G+ E    E +   + RAD A+Y +K+SG N+V
Sbjct: 248 DIDQLRLPISEEETAKVTVSIGVTEFSPGEEMERCVKRADMAMYNSKRSGGNQV 301


>gi|114564162|ref|YP_751676.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114335455|gb|ABI72837.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 548

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 87/166 (52%), Gaps = 11/166 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ QL+  D L+ L N  AF       IS    ++  +++V  DID+FK+IND FGH VG
Sbjct: 386 KLEQLASKDPLTLLYNRRAFSALVDKEISRAKRHHFPITLVILDIDHFKKINDEFGHNVG 445

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++   +D+L +       + R GGEEF      ++         ++R+ I  SQ++ S
Sbjct: 446 DDILCRFADELSLNMRKENLICRWGGEEFVILIPEATSTMVFKHIEEVRQKI--SQMSFS 503

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             P   +T SAGIA    +EP      RAD ALY AK +GRN ++ 
Sbjct: 504 --PVEKLTFSAGIATLRVEEPFKEWFQRADSALYQAKGAGRNCIIT 547


>gi|332702791|ref|ZP_08422879.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552940|gb|EGJ49984.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 427

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 11/159 (6%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G +N  +F       +     Y   LS+  FDID FK+IND  GH  GD+V+  L 
Sbjct: 273 DHLTGAMNRMSFQEFLSEEMKRATRYGTPLSVAMFDIDDFKRINDELGHDAGDRVLVGLV 332

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +         + R GGEEF   A G   +E A L   LR +IE+ Q     G    +T
Sbjct: 333 KLVEANIRELDRLARWGGEEFMLLAPGCGPEEMAKLGEKLRALIESGQ----PGGVGRVT 388

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            S G+++    +  + ++ RAD+ALY+AK+ G+N V   
Sbjct: 389 CSFGVSDFAPGDTGADLLRRADEALYLAKRRGKNTVTTL 427


>gi|218528564|ref|YP_002419380.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
 gi|218520867|gb|ACK81452.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
          Length = 506

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 111/227 (48%), Gaps = 12/227 (5%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
           +  +  I N+ L    +   +  + I++  + LV+  +T++L L  + G  L+       
Sbjct: 265 VGDLPLILNVALAVDEVEAGWRTKAIVIGTVVLVLCGLTVALSL--LFGRELRRRAAMQA 322

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            +++LS  D L+GL N   F       + S+G   + LS++  D D+FK+ ND  GH VG
Sbjct: 323 ELARLSLTDALTGLPNRRRFDETFGRAVKSVGRTGKPLSLLVVDADHFKRFNDRHGHAVG 382

Query: 152 DKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D+V+  L+  L      P   V R+GGEEFA     +  + AA +A  + + +    +  
Sbjct: 383 DEVLRGLAHCLSASVHRPDDLVARVGGEEFALLLPDTDVEGAARIAAKVHETVATLGVAS 442

Query: 211 SSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   +  +T+S G  +A     + +  +  RAD ALY AK +GRNR 
Sbjct: 443 AGLAAGGVTVSVGLAVANGAGADAMDDLYRRADAALYEAKAAGRNRT 489


>gi|241662833|ref|YP_002981193.1| PAS/PAC sensor containing diguanylate cyclase [Ralstonia pickettii
           12D]
 gi|240864860|gb|ACS62521.1| diguanylate cyclase with PAS/PAC sensor [Ralstonia pickettii 12D]
          Length = 416

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 93/179 (51%), Gaps = 16/179 (8%)

Query: 88  SILKELFISYNRISQLSRI---DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDID 137
           S+ K++     R   L R    D L+GL N        +    +  +    L++   DID
Sbjct: 239 SVSKDITKRVEREQALLRAATKDKLTGLHNRHHGEQLLAERYKTARTLQRPLTLAMCDID 298

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK+IND FGHP GD+V+A ++D L     +   V R GGEEF       S+ +A  LA 
Sbjct: 299 HFKRINDEFGHPTGDRVLAEVADMLRQAVRSRDAVIRWGGEEFMIVLNECSQTDAVDLA- 357

Query: 198 DLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             ++I++  ++N      I  +T+S G+A     E I  +I RAD ALY AK++GRNR+
Sbjct: 358 --KRILD--RVNAYEDEEIPTLTLSLGLATLAPNEAIDELIARADSALYEAKRTGRNRL 412


>gi|108758642|ref|YP_631920.1| response regulator [Myxococcus xanthus DK 1622]
 gi|108462522|gb|ABF87707.1| response regulator [Myxococcus xanthus DK 1622]
          Length = 318

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 88/181 (48%), Gaps = 12/181 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  L++ D L+GL N  A              Y   LS+V  D+D+ K IND  GH
Sbjct: 132 QQRRLQILAQTDGLTGLANFRALSIRMEEEFRRAQRYQYPLSVVIIDLDHLKAINDGMGH 191

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VG++ I  L+ QL        F  R GG+EF A     +  EAA+ A  +R  +    +
Sbjct: 192 DVGNRAILALATQLKHELRESDFAARFGGDEFVALLPHQTALEAAVFAERIRTGLRAVGV 251

Query: 209 NISSG-PS-IHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             S G P+   +++S GIA+      +E   +++  AD ALY AK+ GR+RVV F    N
Sbjct: 252 QKSDGRPAPFGLSVSVGIADHTFEGPREDTESLMKAADAALYEAKREGRDRVVVFGRPAN 311

Query: 264 N 264
           +
Sbjct: 312 S 312


>gi|269968827|ref|ZP_06182813.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269826577|gb|EEZ80925.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 456

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 10/148 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL-----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GL N   F  S   +  +L     S++  D D  K+IND++GH VGD+VI  ++D 
Sbjct: 308 DDLTGLFNRRVFQDS--EFKRRLETAPYSVIAIDGDRIKRINDHYGHHVGDEVIGIIADA 365

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +  VF    ++ R GG+EF A   G S  +++ILA  LR +++++++       I +++S
Sbjct: 366 MSKVFRNSDYLVRTGGDEFVAILPGCSISQSSILAKKLRSVVKDNRLKT---LDIEVSVS 422

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKK 249
            GIA     E +  +I RAD+ LY  KK
Sbjct: 423 TGIAANELHETLQDVIVRADEDLYEMKK 450


>gi|188996073|ref|YP_001930324.1| diguanylate cyclase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931140|gb|ACD65770.1| diguanylate cyclase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 492

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 76/156 (48%), Gaps = 11/156 (7%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N S         I      N+ +SI+ FDID+FK+IND +GH  GD  +  ++
Sbjct: 336 DKLTGLFNRSIIDTLIQVEIERAKRNNKPISILLFDIDHFKKINDTYGHDKGDYALKTIA 395

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           +          +V R GGEEF A    +    A  +A  +R  IEN            +T
Sbjct: 396 EIARRTLRKSDYVLRWGGEEFLAILPETDLDGATKVAEKIRSNIENYNFKDIG----RVT 451

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S G+      EP+   I RAD+ALY AK  GRNRV
Sbjct: 452 VSIGVTMLKIGEPLDNAIKRADEALYAAKNKGRNRV 487


>gi|190570797|ref|YP_001975155.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|213019676|ref|ZP_03335481.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|190357069|emb|CAQ54466.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|212994717|gb|EEB55360.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 458

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 10/166 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           ++S  D L+   N   F + L +        +  LS++  DIDYFK +NDNFGH  GD++
Sbjct: 292 EMSIKDPLTNCYNRRYFDAHLRNIVKDSVEKDRSLSLMILDIDYFKMVNDNFGHNAGDEL 351

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INISSG 213
           +  +  ++         + R GGEEF      ++  +A  +A  +RKII     I +   
Sbjct: 352 LKEIQKRISENIRVTDLLARFGGEEFVVVMPDTNVSDAYTIAERIRKIIAKEPFILVGKN 411

Query: 214 PSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + ++T+S GI+  +R   + +   I RAD+ LY AK SGRNRVV 
Sbjct: 412 TTHNVTVSIGISAMQRSDLDDVKKFIVRADKYLYKAKNSGRNRVVT 457


>gi|119776003|ref|YP_928743.1| response regulator [Shewanella amazonensis SB2B]
 gi|119768503|gb|ABM01074.1| response regulator containing a CheY-like receiver domain and a
           GGDEF domain protein [Shewanella amazonensis SB2B]
          Length = 564

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 84/164 (51%), Gaps = 16/164 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I + + ID L+GL N   F   L          ++ LS++  DIDYFKQ ND+ GH  GD
Sbjct: 402 IKRRNHIDVLTGLYNRRFFDEQLQQEYLKACRRHQPLSLLVLDIDYFKQFNDSRGHAEGD 461

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINIS 211
           K +  ++D L      P    R GGEEFA     +S  EA  LA  +R K++ +++    
Sbjct: 462 KALQLVADILAGTVQKPGMACRYGGEEFALILPETSAGEAMQLAERIREKVVRDTK---- 517

Query: 212 SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRN 253
               I +T+S G +E   K+ +S   +   AD+ALY AK  GRN
Sbjct: 518 --ERIELTVSIGCSEFDAKQHLSGFALFEAADEALYRAKADGRN 559


>gi|315126927|ref|YP_004068930.1| GGDEF protein [Pseudoalteromonas sp. SM9913]
 gi|315015441|gb|ADT68779.1| GGDEF protein [Pseudoalteromonas sp. SM9913]
          Length = 960

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 58/156 (37%), Positives = 82/156 (52%), Gaps = 10/156 (6%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N  AF        S   + N+  +I   DID+FK+IND + H +GD+VI  ++
Sbjct: 803 DQLTDLPNRRAFDGWLADNFSDFKACNKSFAIAIMDIDHFKRINDGWSHLIGDQVICEVA 862

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHI 218
           + L         V R GGEEF       S  +A  +   LRK IEN    NI+ G S  +
Sbjct: 863 NILKAHCEGEQEVARWGGEEFTFVFPDMSAVQAQEMCEKLRKCIENKNFSNIAEGLS--V 920

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           T+S G+++    +    ++ RADQALY AK +GRNR
Sbjct: 921 TVSFGVSDSGDVDDYDRLLSRADQALYKAKNNGRNR 956


>gi|307824789|ref|ZP_07655012.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Methylobacter tundripaludum SV96]
 gi|307734147|gb|EFO05001.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Methylobacter tundripaludum SV96]
          Length = 426

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 88/170 (51%), Gaps = 10/170 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHPV 150
           ++ +L+  D L+GL N   F+  L     K++        ++  D+D+FK++ND +GH  
Sbjct: 257 QLQKLASTDPLTGLFNRRVFLEKLELERAKVARLPHYSAVLLMLDLDFFKRVNDAYGHAT 316

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+   ++             RLGGEEFA    G+ + +A I+A  LR+ +  + I+ 
Sbjct: 317 GDIVLKVFAEIARNTSRAIDIAARLGGEEFAILLSGADKNDALIMAERLREQVAKTVIDH 376

Query: 211 SSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            +GP + IT+S G A     +     +++RAD ALY AK  GRN+   F 
Sbjct: 377 DAGP-VQITVSIGAATLSVDDINGEAVLHRADVALYEAKDRGRNQTCWFG 425


>gi|291288444|ref|YP_003505260.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885604|gb|ADD69304.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809]
          Length = 643

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 84/170 (49%), Gaps = 13/170 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           SI   L   YNRI        +  +L++   I   G Y +  S++  DID+FK +NDNFG
Sbjct: 486 SITDPLTKLYNRIK-------VDEILDYE--IEQAGRYGKDFSVLISDIDHFKDVNDNFG 536

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+V+  +++ L     +   V R GGEEF      +  ++AA +A  LR  IE+  
Sbjct: 537 HQTGDEVLKIIAELLNDNTRSSDTVARWGGEEFLIIFTNTPLEDAATIAEKLRTKIESYD 596

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +       +T S G+A+  + E     I RAD ALY AK   RN VV 
Sbjct: 597 FPVGRT----VTASFGVAQYVNGEQKEHFIKRADDALYAAKNKSRNVVVA 642


>gi|311278699|ref|YP_003940930.1| diguanylate cyclase [Enterobacter cloacae SCF1]
 gi|308747894|gb|ADO47646.1| diguanylate cyclase [Enterobacter cloacae SCF1]
          Length = 458

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 102/210 (48%), Gaps = 9/210 (4%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSIL-KELFISYNRISQLSRIDCLSGLL 113
           +T  Y  + +L     L ++S  + + + +I+  IL K     Y    Q S  D L+ L 
Sbjct: 244 ITSEYSTDNMLYRTRMLEVLSTLVFVFILFINSFILYKNSNTKYKNAYQNSIRDHLTMLY 303

Query: 114 NHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
           N   F  +L       +    LSI+  DID+FK IND +GH  GDKVI F++ ++  +  
Sbjct: 304 NRRYFYDALMKLIPCITVKNPLSIIVCDIDFFKSINDKYGHQHGDKVIQFIAIKIQSLLR 363

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQINISSGPSIHITISAGIAE 226
               + R+GGEEFA    G +E+ A I+A  +   + ++   N     S  ITIS GI  
Sbjct: 364 QNDILARIGGEEFALLLPGVNEENAKIIAERICHAVSQHDSKNTDIHQSERITISMGIYS 423

Query: 227 RCHKEPISTI-IYRADQALYVAKKSGRNRV 255
                    + I RAD A+Y AK +GRN V
Sbjct: 424 ATDNTMTEDVYISRADDAMYKAKHAGRNCV 453


>gi|254456732|ref|ZP_05070160.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207085524|gb|EDZ62808.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 387

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 7/160 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +L+  D L+ L    A +  +     K S+   DID+FK+ ND +GH  GD+V+  ++ +
Sbjct: 228 RLAFYDELTALPGRRALVEDMAKLGRKYSLAMCDIDFFKKFNDTYGHDTGDEVLKMVASK 287

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSIHI 218
              V G      R GGEEF         +E+ +  + LR+ I ++     N  S   I I
Sbjct: 288 FSEVSGGGK-AYRYGGEEFVILFPSKESEESFVHVDALRQNIASTPFSVRNKQSTKKIFI 346

Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +SAGI +     K+P + ++ RAD ALY AKK+GRN+V+
Sbjct: 347 NVSAGITQYTTKDKDPFA-VMKRADNALYKAKKAGRNQVI 385


>gi|190893470|ref|YP_001980012.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190698749|gb|ACE92834.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 384

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 91/170 (53%), Gaps = 10/170 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           S N++++L+  D L+G LN       + +LGS  + +S++  DID+FKQ+ND  GH  GD
Sbjct: 215 SRNQLTELAHHDPLTGALNRGGLAQHLPALGS--QPVSLLIIDIDHFKQLNDRHGHAAGD 272

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+   +     +      + R GG+EF A     S ++A  +A  +R    +    +  
Sbjct: 273 EVLRLFASVSRSIMRPHDLLARQGGDEFLAVLKNLSREDAVAIAERIRL---DFAAAVMQ 329

Query: 213 GPSIHI--TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            P + +  T+S G+A R        ++++AD+ALY +K+ GRNRV  F +
Sbjct: 330 RPDLGVFPTLSIGVATRESDGDFEGLMHKADEALYRSKREGRNRVEAFRE 379


>gi|297583364|ref|YP_003699144.1| diguanylate cyclase [Bacillus selenitireducens MLS10]
 gi|297141821|gb|ADH98578.1| diguanylate cyclase [Bacillus selenitireducens MLS10]
          Length = 368

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 13/174 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFI---------SSLGSYNEKLSIVFFDIDYFKQ 141
           +EL +    + +LS++D  +GL NH  F          SS  SY  +L+++  DID FKQ
Sbjct: 194 QELMVRNTIMERLSKVDAPTGLYNHKTFQEYLAYLFEQSSTSSYRFQLAML--DIDNFKQ 251

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH VGDK++  ++  +           R GGEEF       S + A  +   +R 
Sbjct: 252 VNDTYGHAVGDKILERIAGIIQANVDANDIASRYGGEEFGVLFTDCSFETALHVVETIRL 311

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            IE        G   ++T+S G+ E   +E    +  +AD  LY+AKK+G+NR+
Sbjct: 312 EIERLPHEEMGGR--NVTVSIGLVEYTDEEQAPVLFEKADTLLYLAKKNGKNRI 363


>gi|42520116|ref|NP_966031.1| response regulator PleD [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42409853|gb|AAS13965.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 460

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 10/167 (5%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +++S  D L+   N   F + L +        + +LS++  DIDYFK +ND+FGH  GD+
Sbjct: 291 AEMSIKDPLTNCYNRRYFDAHLRNIVKDSVEKDRRLSLMILDIDYFKIVNDSFGHSAGDE 350

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  +  ++         + R GGEEF      ++  +A  +A  +RKII      ++  
Sbjct: 351 LLKQIQKRISENIRVTDLLARFGGEEFVVVMPDTNVSDAYTIAERIRKIIAKKPFILADK 410

Query: 214 PSIH-ITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
            + H +T+S GIAE      + I   I RAD+ LY AK SGRNRVV 
Sbjct: 411 NTTHDVTVSIGIAEMQESDLDNIKEFIVRADKYLYKAKNSGRNRVVT 457


>gi|85711692|ref|ZP_01042749.1| Signaling protein with a ligand-binding sensor domain and GGDEF
           domain [Idiomarina baltica OS145]
 gi|85694552|gb|EAQ32493.1| Signaling protein with a ligand-binding sensor domain and GGDEF
           domain [Idiomarina baltica OS145]
          Length = 999

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 57/159 (35%), Positives = 84/159 (52%), Gaps = 8/159 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+R D L+ L N  AF   L           + LS+   D+D+FK IND F H +GD+V+
Sbjct: 838 LARQDSLTQLGNRRAFDEQLQYEFKRCERSEQPLSLAIIDVDHFKSINDRFLHVIGDQVL 897

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             LS  L  +     ++ R GGEEFA     ++ +EA   A  +R+ IE++         
Sbjct: 898 IELSALLSNMLRDIDYIARWGGEEFALLMPETTAKEALQAAERIRQRIEDTSYQ-HLADE 956

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + +T+S G+A   H    S ++  AD+ALY AK+SGRNR
Sbjct: 957 LAVTVSIGVASSEHYPNHSALLVAADKALYKAKQSGRNR 995


>gi|95928635|ref|ZP_01311382.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
 gi|95135425|gb|EAT17077.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
          Length = 301

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 19/219 (8%)

Query: 56  TPFYGLEYILVENLSLVIISITISLLLGYISGSI-LKELF--ISYNR--------ISQLS 104
           +P     Y+  +    V +S+ IS+L       I   ELF  IS +R        + QL+
Sbjct: 82  SPRAAQVYLHHKQGHRVPVSVRISVLTDETGAVIGAAELFSDISDHRANELRVKELEQLA 141

Query: 105 RIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            +D L+ L N     S L  +  +        ++ FFDID+FKQIND +GH  GD V+ F
Sbjct: 142 LVDKLTQLANRRYIESQLEKHLTEFRRTQLPFAVYFFDIDHFKQINDTYGHDAGDTVLKF 201

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           L+  L+         GR GGEEF A       +        LR ++E S +       + 
Sbjct: 202 LAKTLIDNGRAFDIYGRWGGEEFIAIIRNLDGENLLTFGERLRMLVEQSYLKWGE-HRLA 260

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +T+S G     + + + ++I RAD+ LY +KK+GRNR+ 
Sbjct: 261 VTVSLGGTLAQNDDTLDSLIKRADRLLYTSKKNGRNRLT 299


>gi|325969963|ref|YP_004246154.1| diguanylate cyclase with PAS/PAC sensor [Spirochaeta sp. Buddy]
 gi|324025201|gb|ADY11960.1| diguanylate cyclase with PAS/PAC sensor [Spirochaeta sp. Buddy]
          Length = 306

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 5/168 (2%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           + ++ +LS +D L+GL N   F+  +  +     +  I+  DID FK +ND +GH  GD 
Sbjct: 135 HKKLRELSYVDPLTGLYNRRYFLERVRIHLMEKGEAHIMLCDIDRFKDVNDQYGHLAGDA 194

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+   +     V      + RLGG+EF  A    ++++A  +   LRK +E + I   S 
Sbjct: 195 VLKEFARIARDVLKHNHAIARLGGDEFVMALTDLTDEQAYEVGESLRKRVEETSIYYQS- 253

Query: 214 PSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + I IS GIA+   ++   S +I  AD+ALY AK +G+NRV  FSD
Sbjct: 254 TVLSICISIGIAKLSFEDLEKSELIADADRALYQAKAAGKNRVCLFSD 301


>gi|312884160|ref|ZP_07743872.1| GGDEF family protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368208|gb|EFP95748.1| GGDEF family protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 337

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 87/162 (53%), Gaps = 5/162 (3%)

Query: 100 ISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           + Q +  D L+ L N  +F   I++L    +KL ++  D+D+FK  NDN+GH +GD V+ 
Sbjct: 174 VQQDALFDGLTSLYNRRSFDQDINALYQSEQKLCLILADVDHFKAFNDNYGHLLGDAVLK 233

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPS 215
            L+  L       +   R GGEEFA        + A   A  +R+  E  S  +  SG  
Sbjct: 234 GLARTLQRGCRDGISAYRFGGEEFALIVPNKPLRIARQFAETMRRATEKLSVKDRRSGKH 293

Query: 216 I-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +ITIS G+AE   KE + ++I RAD  LY AK  GRNRV+
Sbjct: 294 VGNITISLGVAELQEKESVESLIERADGLLYEAKSLGRNRVM 335


>gi|222148304|ref|YP_002549261.1| response regulator PleD [Agrobacterium vitis S4]
 gi|221735292|gb|ACM36255.1| two component response regulator [Agrobacterium vitis S4]
          Length = 457

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 103/216 (47%), Gaps = 20/216 (9%)

Query: 60  GLEYILVENLSL-----VIISITISLLLGYISGSILKELFISYNRIS-----QLSRIDCL 109
           G EY++V  L L     ++  +  + LL      + ++ +    R S     +L+  D L
Sbjct: 239 GEEYLIVRALDLGVNDYIVRPVDTNELLARTLTQLRRKRYNDRLRSSVQQTIELAVTDDL 298

Query: 110 SGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GL N     + +    E+       LS+   DID FK +ND +GH  GD V+   + ++
Sbjct: 299 TGLHNRRYLDTHIKVLFERSSLRKQPLSVCLVDIDRFKLVNDTYGHEAGDDVLREFAARI 358

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                      R GGEEF      +S++ A  +A  LR+++E     + SG  +++T S 
Sbjct: 359 RATVRGADLACRYGGEEFVVVMPDTSQEMAGTVAERLREMVEKKPFRLQSGGELNVTASL 418

Query: 223 GIAERCHK--EPISTIIYRADQALYVAKKSGRNRVV 256
           GIA    +   P   ++ +AD+ALY AK  GRNRVV
Sbjct: 419 GIATAGDEVASP-EQLLRQADRALYQAKTEGRNRVV 453


>gi|149910113|ref|ZP_01898760.1| hypothetical protein PE36_13142 [Moritella sp. PE36]
 gi|149806838|gb|EDM66800.1| hypothetical protein PE36_13142 [Moritella sp. PE36]
          Length = 399

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 108/247 (43%), Gaps = 19/247 (7%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLT-----------PFYGLEYILVE-NLSLVIIS 75
           M Y  I  S  +   + IA + LF + ++           P   LEYI    N + VI  
Sbjct: 146 MAYRDIPLSFTLTPYLIIAMLGLFPLTVSGGVALLSVISLPLAMLEYIQYSGNYTAVIDK 205

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEK 128
           + + +L G I   +     +   ++ + S +D L+GL+N    +  +        +    
Sbjct: 206 LWLFVLFGGICLWLQSGQMVMLMKLYRESTVDSLTGLINRRVLMRQVTGIAKNSNAAQGS 265

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            S++ FD+DYFK++ND +GH VGDKV+  +S  L         + R GGEEF        
Sbjct: 266 FSVMMFDLDYFKRVNDTYGHMVGDKVLVKVSSLLKQELRNYDVIARFGGEEFLVVMPHLE 325

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
             +A  +A  + + I  S +       I  T S G+ +    E I  +  R D  LY AK
Sbjct: 326 LAQATQVALRVAEAIRKSSVMTDEQQEISFTTSIGVTQYIADESIVQLFKRVDDLLYQAK 385

Query: 249 KSGRNRV 255
             GR+RV
Sbjct: 386 VQGRDRV 392


>gi|99035891|ref|ZP_01314942.1| hypothetical protein Wendoof_01000220 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 460

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 10/167 (5%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +++S  D L+   N   F + L +        + +LS++  DIDYFK +ND+FGH  GD+
Sbjct: 291 AEMSIKDPLTNCYNRRYFDAHLRNIVKDSVEKDRRLSLMILDIDYFKIVNDSFGHSAGDE 350

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  +  ++         + R GGEEF      ++  +A  +A  +RKII      ++  
Sbjct: 351 LLKQIQKRISENIRVTDLLARFGGEEFVVVMPDTNVSDAYTIAERIRKIIAKKPFILADK 410

Query: 214 PSIH-ITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
            + H +T+S GIAE      + I   I RAD+ LY AK SGRNRVV 
Sbjct: 411 NTTHDVTVSIGIAEMQESDLDNIKEFIVRADKYLYKAKNSGRNRVVT 457


>gi|172057395|ref|YP_001813855.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15]
 gi|171989916|gb|ACB60838.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15]
          Length = 374

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 109/207 (52%), Gaps = 13/207 (6%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQL----SRIDCLSGLLNHSAFISSLG 123
           +L L++ + TI L +G +S S+L   F + NR  +L    S  D L+GL N   + +   
Sbjct: 160 SLRLLLATWTIGLAVGVLS-SMLTLDFQTLNRQVELYKQSSERDHLTGLYNRRVWDTRTA 218

Query: 124 SYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    +++  DID+FK +ND +GH  GD V+   ++ L+          R+GGEEF
Sbjct: 219 GLEQEGRIYNVLALDIDHFKHVNDTYGHGNGDFVLQQFANILMEETRPHDITVRIGGEEF 278

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIY 238
                  +  +   +AN +R+ I + +  +   P I +T S GIA  ++ H + ++ +  
Sbjct: 279 MILIYDLTPSKIIKVANRIRERIAHERFQLDGFPDITVTASIGIAHGKQIHIQHMNGL-- 336

Query: 239 RADQALYVAKKSGRNRVVCFSDIENNT 265
            AD+ALY AK+ GRNR + F+ ++  +
Sbjct: 337 -ADEALYTAKQQGRNRTILFNQLDQQS 362


>gi|317052049|ref|YP_004113165.1| diguanylate cyclase [Desulfurispirillum indicum S5]
 gi|316947133|gb|ADU66609.1| diguanylate cyclase [Desulfurispirillum indicum S5]
          Length = 342

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 90/189 (47%), Gaps = 19/189 (10%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFIS-----SLGSYNEKLSIVFFDIDYFKQIND 144
           ++ L   Y  + Q +R D L+GLLN            LG +   L +V  DID FK+IND
Sbjct: 157 MEALRQRYEELGQRARRDFLTGLLNRQVLEEMLQEICLGEHRHPLGLVAMDIDNFKEIND 216

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLR 200
            +GH  GD V+   + +L         V R GGEEF        L ++ Q    LA  +R
Sbjct: 217 TYGHLCGDSVLKLFARKLGEYVRRDDLVFRFGGEEFIVILPQTNLAATYQ----LAEHIR 272

Query: 201 KIIENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + I     ++ +G       S+ +T S G A     E   +++ RADQA+Y +K++GRNR
Sbjct: 273 RHIAEHVFHLEAGGQLSADISLRLTASFGAASHVAGESHESLLARADQAMYASKRAGRNR 332

Query: 255 VVCFSDIEN 263
               +  E+
Sbjct: 333 TTIAAHPEH 341


>gi|288920669|ref|ZP_06414972.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EUN1f]
 gi|288347939|gb|EFC82213.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EUN1f]
          Length = 1299

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 10/165 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +R+   +R D L+GL N S F+  L S          ++++ D+D FK IND+FGH  GD
Sbjct: 440 DRLGHQARHDLLTGLANRSGFVDRLASALAVSTESSSAVLYLDLDGFKPINDSFGHAAGD 499

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
           +V+A +  +L  +       GRLGG+EFA     S    A+++A+   ++I      I+ 
Sbjct: 500 RVLAIIGARLAALLREGDLAGRLGGDEFAMLLRDSDLATASLVAD---RVISAVAEEITL 556

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G  + +  S GIA  R  +     +I+ AD A+Y AK+ G  RV
Sbjct: 557 EGECVQVGASVGIAMGRPGRSRADELIHAADTAMYAAKRDGGGRV 601



 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 11/162 (6%)

Query: 107  DCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            D L+GL N +AF      ++  G       ++F D+D FK +ND FGH +GD V+  +  
Sbjct: 1139 DPLTGLPNRAAFNRHLAAVAEHGQAGTSFGVLFIDLDNFKPVNDRFGHAIGDDVLRVIGA 1198

Query: 161  QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHIT 219
            ++         V RLGG+EFA       E +A ++     +I+E+S+  I+ +G +I + 
Sbjct: 1199 RIGAASRRTDMVSRLGGDEFAVLI---DEADADLVCAISARILESSRQPIALAGTTITLG 1255

Query: 220  ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + GIA  R   +   T +  AD+A+Y AK+ GR R   F+D
Sbjct: 1256 ATVGIALCRVGTDDPETALRNADKAMYRAKRGGRGRYALFAD 1297


>gi|311693502|gb|ADP96375.1| diguanylate cyclase [marine bacterium HP15]
          Length = 363

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 8/161 (4%)

Query: 107 DCLSGLLNHSAFISSLG-SYNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N    +  L   Y   L      S++  DID FK +NDN+GH VGD++I  ++
Sbjct: 200 DALTGLANRREALEQLDIEYQRYLRNARPFSVLLMDIDLFKSVNDNYGHHVGDELIILVA 259

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         + R GGEE+      ++  EA   AN +R+      ++   GP I  T
Sbjct: 260 RTLREQCRKVDTLARWGGEEYLVLLPETNTGEALASANRIREAFAVRSVSTEQGP-IQAT 318

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           IS G+A     E I  ++ R+D+ALY AK  GRNR   + +
Sbjct: 319 ISVGVASIRGSESIDRLLQRSDEALYRAKSEGRNRACGYEN 359


>gi|229825983|ref|ZP_04452052.1| hypothetical protein GCWU000182_01347 [Abiotrophia defectiva ATCC
           49176]
 gi|229789725|gb|EEP25839.1| hypothetical protein GCWU000182_01347 [Abiotrophia defectiva ATCC
           49176]
          Length = 484

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 89/173 (51%), Gaps = 12/173 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGD 152
           N+I  L+ +D L+ ++N  +F++    ++     E   +   DID+FK IND  GH  GD
Sbjct: 301 NQIISLATLDELTKIMNRKSFMARFDYFSKQHLLEGGHLFLIDIDFFKTINDTLGHAAGD 360

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + ++FL+  L    G   F+ R GG+EF      + E+    +    ++I E       +
Sbjct: 361 EALSFLATNLTACVGKDGFIARWGGDEFIGIFFSTVEEPITKIKTLSKEISE-----TET 415

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           G   H+T+S G+        ++  + +AD ALY +KK+GRN+V  ++  EN T
Sbjct: 416 GKRFHLTLSVGMTLIEDDLSLNKEVEKADIALYTSKKNGRNQVTLYN--ENQT 466


>gi|288941995|ref|YP_003444235.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
 gi|288897367|gb|ADC63203.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
          Length = 317

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 13/169 (7%)

Query: 98  NRIS-QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           NR++ QL+R D L+ L N   F+  L        + +  LS++  D+D+FK++ND FGH 
Sbjct: 151 NRLNEQLARTDALTQLPNRRYFMERLNHGVRQAQTRSHPLSVLMMDLDHFKRVNDTFGHA 210

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-NSQI 208
            GD+V+   ++ +          GRLGGEEF      +  + A  +A  LR  +     +
Sbjct: 211 AGDRVLVAFAELMRAQVRLSDLPGRLGGEEFGLYMFDAELEVAVSVAERLRAHVNLMRPL 270

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +    PS+ I    G+A     E    ++ RAD  LY AK++GRNRV+ 
Sbjct: 271 DTDYRPSVSI----GVAALAPGEDTEQLLKRADDGLYRAKETGRNRVIA 315


>gi|323158378|gb|EFZ44423.1| diguanylate cyclase domain protein [Escherichia coli E128010]
          Length = 207

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 96/177 (54%), Gaps = 8/177 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQ 141
           YI  +++  +F   N  + ++  D L+   N   FI SL   S +   S++  DID FK 
Sbjct: 33  YIISTLMYYVFRKLNHANHMAIHDPLTNTYNRRYFIDSLKNISKHHDFSVIMLDIDNFKS 92

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH +GD+VI  ++  +         +GRLGGEEF     G++++    +A  +RK
Sbjct: 93  INDKWGHHMGDQVIVMVTRIIKKSIRKEDILGRLGGEEFGIIIKGNTQKLLLSIAERIRK 152

Query: 202 IIEN--SQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            IE   S+  +S GP   IT+S G   ++  +  P S ++  AD+ALY AK++G+ R
Sbjct: 153 NIEEQCSEKLLSHGPE-KITVSIGCFTSKENNFSP-SEMLVNADKALYQAKRTGKTR 207


>gi|311067396|ref|YP_003972319.1| putative diguanylate cyclase or phosphodiesterase [Bacillus
           atrophaeus 1942]
 gi|310867913|gb|ADP31388.1| putative diguanylate cyclase or phosphodiesterase [Bacillus
           atrophaeus 1942]
          Length = 359

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 10/162 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+G+ N   F   +  + ++         ++++ DID FK IND +GH  GD+V+  L
Sbjct: 195 DFLTGIFNKRKFEEVMHQFYKQAGRSPSFQFALIYLDIDRFKHINDQYGHHEGDQVLKEL 254

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +L +   T     R+GGEEFA      +  +A  ++  +R+ +    I +SSG  + +
Sbjct: 255 GARLKLNTRTSDPAARIGGEEFAVLLPNCTHAKAVQVSERIRQAVSGEPIILSSGDKLSV 314

Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           T+S G A    + +   T+   ADQ LY AK++GRN+ VC+S
Sbjct: 315 TVSLGTAHYPLNADQPETLPLIADQKLYQAKQTGRNK-VCYS 355


>gi|298249770|ref|ZP_06973574.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Ktedonobacter racemifer DSM 44963]
 gi|297547774|gb|EFH81641.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Ktedonobacter racemifer DSM 44963]
          Length = 960

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 94/173 (54%), Gaps = 15/173 (8%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y   ++ +  D ++ L NH A I+ + +         E ++++F D+D FK IND++GHP
Sbjct: 560 YRENARAAVTDPITNLPNHRAVIAYIDTALREASETRESMALLFVDLDRFKLINDSWGHP 619

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENS-- 206
            GD V+  +  +L    G   FVGR GGEEFA     S+  EA  +A  +R KI+     
Sbjct: 620 AGDAVLHEVGIRLQDTVGITNFVGRYGGEEFAVILRHSNVSEAVQVAEKIRHKIMAKPFI 679

Query: 207 -QINISSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRV 255
             I+ ++ P + +TI+A I       H E    ++ +AD+A+Y AK SGRNRV
Sbjct: 680 WDIDENATP-VELTITASIGISIYPYHGETREALLEQADRAMYRAKHSGRNRV 731


>gi|291279602|ref|YP_003496437.1| hypothetical protein DEFDS_1213 [Deferribacter desulfuricans SSM1]
 gi|290754304|dbj|BAI80681.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 389

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 92/173 (53%), Gaps = 17/173 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKL----------SIVFFDIDYFKQINDNFGH 148
           ++S++  +D L+G+ N    + +L    EKL          S++  D+D+FK  ND +GH
Sbjct: 220 KLSEMVHLDGLTGIGNKRYLLENL----EKLWQLHKDQNIISVLMIDVDFFKNYNDTYGH 275

Query: 149 PVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
             GD+ +  +S  ++ VV      VGR GGEEF      + E  A  +A  +RK IE  +
Sbjct: 276 IAGDECLKKISSTIMEVVRSEKDIVGRFGGEEFMVILPYADEVTAFKIAERIRKKIEQLK 335

Query: 208 I-NISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           I +ISS  S  +T+S G+A    H +    ++  AD+ALY AK  GRNRV  +
Sbjct: 336 IEHISSKVSNVVTVSIGLATTIPHNDNYEKLVECADKALYTAKNLGRNRVEVY 388


>gi|153832965|ref|ZP_01985632.1| putative signal transduction protein [Vibrio harveyi HY01]
 gi|148870686|gb|EDL69592.1| putative signal transduction protein [Vibrio harveyi HY01]
          Length = 441

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 84/156 (53%), Gaps = 12/156 (7%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GLLN     + L +  E+    SI  FDID+FK IND +GH +GD V+     Q  
Sbjct: 287 DFLTGLLNRRGLENRLYALKEQQVSGSIAVFDIDFFKAINDTYGHEIGDVVLV----QFA 342

Query: 164 VVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           ++ G        + R GGEEF     G++  EA +    LR+ +  + I I+   +I IT
Sbjct: 343 LLCGAKTDLNFTLSRTGGEEFVLLMPGATRAEAVLFCEALRQEVAATPILINE-LNIEIT 401

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S G+A     + +   +  AD+ALY AK++GRNRV
Sbjct: 402 VSIGVAHFHSADDVRIALAEADEALYKAKQTGRNRV 437


>gi|269964647|ref|ZP_06178885.1| putative sensory box/GGDEF family protein [Vibrio alginolyticus
           40B]
 gi|269830546|gb|EEZ84767.1| putative sensory box/GGDEF family protein [Vibrio alginolyticus
           40B]
          Length = 632

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 90/172 (52%), Gaps = 21/172 (12%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHP 149
           ++  LS  D L+GL N   F   L  Y         +    +  FDID+FK+IND  GH 
Sbjct: 466 KLRNLSEKDGLTGLWNRRKFEEQLAQYAGIIERYPDSPPACLALFDIDHFKRINDELGHD 525

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GDKVI  +++ L+    +  FV R+GGEEFA     ++ +EA I+ N LR  +   Q++
Sbjct: 526 EGDKVICSVAETLLEEVRSTDFVSRVGGEEFAVIMPHTTLEEAEIVLNRLRVAV---QMH 582

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VCFS 259
              G    IT+SAG ++        T  Y+ AD ALY +K +GRN V +C S
Sbjct: 583 SDRG----ITVSAGYSDLTSDR---TRTYKCADIALYESKSAGRNCVSLCHS 627


>gi|163791379|ref|ZP_02185790.1| hypothetical protein CAT7_10515 [Carnobacterium sp. AT7]
 gi|159873349|gb|EDP67442.1| hypothetical protein CAT7_10515 [Carnobacterium sp. AT7]
          Length = 365

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 109/216 (50%), Gaps = 17/216 (7%)

Query: 53  IGLTPFYGLEYILVENL---SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCL 109
           I L  F+  + IL+ +L   SL+I+S  + +++      ++K L + Y  I + +++D L
Sbjct: 148 ITLNLFFFYDDILLSSLICISLLILSSIVVIVVTAFIEDLIKNLHL-YLEIQEQAQMDYL 206

Query: 110 SGLLNHSAFISSLGSYNEKLSI-----VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           +GL N   F     +     SI     +  DID+FK IND +GH  G+    F+  QL V
Sbjct: 207 TGLYNMRVFNKKWQTIQADKSIATTAFMMLDIDHFKWINDTYGHANGN----FILRQLAV 262

Query: 165 VF--GTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
           +   G P    + R+GGEEF          E    A  +R  + + +  + +G  I+IT+
Sbjct: 263 ILQVGAPDNELIYRVGGEEFCIILNNLPYVEQKKTAEKIRASVASKEFLLENGAGIYITV 322

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S G+A    K+ +  +   AD+ LY+AK  GRN+V+
Sbjct: 323 SIGLAASTQKKDMKKLFRLADRCLYMAKDQGRNKVI 358


>gi|217971643|ref|YP_002356394.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           baltica OS223]
 gi|217496778|gb|ACK44971.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           baltica OS223]
          Length = 628

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 95/187 (50%), Gaps = 19/187 (10%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL     ++++ S ID L+G+ N SAF   L             ++++  DID FK I
Sbjct: 441 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLIAESRISRRQETPIALLMLDIDRFKLI 500

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD+ +  ++  L      P   V R GGEEFA     ++E  A  +A  +R 
Sbjct: 501 NDRFGHLAGDEALRTIAQTLQQHLKRPTDLVSRYGGEEFAIILPNTAEDGALQVAETIRD 560

Query: 202 IIE--NSQINISSGP-SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +   N +  + + P +I I +SA I    + C K     ++ +AD+ALY AK  GRN+V
Sbjct: 561 AVASINFEWEVVAIPLTISIGVSADIVTNDQHCTK-----LLEQADKALYQAKNGGRNQV 615

Query: 256 VCFSDIE 262
             FS ++
Sbjct: 616 SLFSSVQ 622


>gi|152984161|ref|YP_001347656.1| hypothetical protein PSPA7_2284 [Pseudomonas aeruginosa PA7]
 gi|150959319|gb|ABR81344.1| hypothetical protein PSPA7_2284 [Pseudomonas aeruginosa PA7]
          Length = 525

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 8/161 (4%)

Query: 103 LSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N  +F+        +   ++     +  DID+FK IND  GH  GD+ +
Sbjct: 360 LASTDTLTGLHNRHSFLHQAELMLKAAERFHHPCVALMLDIDHFKSINDGHGHLTGDRAL 419

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +++ L         +GRLGGEEFAA     S  +A  +A  LR  +E  +++   G  
Sbjct: 420 QRVAETLRQGLREVDLLGRLGGEEFAAMLPEISLDQALDVAERLRAGVEALRVSNPDGEP 479

Query: 216 IHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
           + +T+S G+A R    + + +++ RAD ALY AK  GRNR 
Sbjct: 480 LRMTVSIGVALRKDVGDDLESLLVRADSALYQAKSGGRNRT 520


>gi|302188967|ref|ZP_07265640.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 695

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 85/161 (52%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q + ID L+GL N +A+       +  + E+   L +   D+D+FK+IND +GH  GDKV
Sbjct: 533 QKALIDPLTGLPNRAAWGERLEQEMARWQEEKNSLLVCILDLDHFKRINDGYGHLAGDKV 592

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +++ L        F+ R GGEEF      +       L ++LR  +E+   +   G 
Sbjct: 593 LKIVANVLSKRLRADDFMARFGGEEFVMLLPATPPATGLTLLDELRAAVESCPFHF-KGE 651

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT+S G+      E   T I RADQALY AK++GRNR+
Sbjct: 652 RVTITVSIGLTAFRPSEKSDTAIKRADQALYKAKENGRNRI 692


>gi|218674208|ref|ZP_03523877.1| putative sensory box GGDEF family protein [Rhizobium etli GR56]
          Length = 432

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 88/163 (53%), Gaps = 10/163 (6%)

Query: 104 SRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           ++ D L+GL N        SA ++     +  +S+V FD+D+FK+IND  GH  GD V+ 
Sbjct: 216 AQTDLLTGLYNRRGFEVAASALLTQAEHGSRWISVVLFDLDHFKKINDVNGHDAGDAVLR 275

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++      F +   + R GGEEF A    S+  +AAI+A  +R  IE ++I + SG  +
Sbjct: 276 HVAGIARENFRSFDLLVRHGGEEFLALLPDSTPDDAAIVAERVRLAIEMAEIPLPSGELL 335

Query: 217 HITISAGIAERCHK---EPISTIIYRADQALYVAKKSGRNRVV 256
            +T S G A R +         ++ RAD ALY AK SGRN VV
Sbjct: 336 KVTASFGCAGRANDGASRNFEDLVKRADLALYAAKASGRNCVV 378


>gi|134292522|ref|YP_001116258.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
 gi|134135679|gb|ABO56793.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
          Length = 413

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 103/203 (50%), Gaps = 14/203 (6%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------IS 120
           N+ L++ +  I   L   S  ++ ++ ++  R  + +  D L+G L+   F       ++
Sbjct: 213 NVILLVAAAAIMPTLSMSSMMMVHDVLLADAR--EAANRDFLTGALSRKGFEAVAHVQLA 270

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI-AFLS-DQLVVVFGTPMFVGRLGGE 178
             G      +++  D+D+FK IND  GH  GD V+  F+   Q+ +  G    +GR+GGE
Sbjct: 271 EAGKQGSPTALLILDLDHFKAINDTLGHAGGDAVLREFVRVTQMQLRRGD--VLGRMGGE 328

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EFA     ++  +A  +A  LR  +    +  ++GP  + +IS G+A     E +  +  
Sbjct: 329 EFAVLLPATALDDARAIAERLRHAVAAQPMTTAAGPCRY-SISCGVAGWRAGETLDHLSA 387

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
           RAD ALY AK+SGRNRV    D+
Sbjct: 388 RADAALYEAKRSGRNRVCLHGDL 410


>gi|269962712|ref|ZP_06177056.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832549|gb|EEZ86664.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 131

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 2/131 (1%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +V FDID+FK++ND +GH  GD+VI   S  L     +    GR GGEEF      ++++
Sbjct: 1   MVIFDIDHFKKVNDTYGHHTGDEVIRRTSSLLRKTARSSDVCGRFGGEEFTVLLPHTNQE 60

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKK 249
           +A+  A  LRK IE   + +     I+ TIS G+ E + + E  +  +  AD ALY AK+
Sbjct: 61  QASYFAERLRKRIEQEIVKVEDFL-INYTISIGVCEYKSYFESHTQWLKSADAALYRAKE 119

Query: 250 SGRNRVVCFSD 260
           +GRN+  C  D
Sbjct: 120 NGRNQTCCHED 130


>gi|226304926|ref|YP_002764884.1| hypothetical protein RER_14370 [Rhodococcus erythropolis PR4]
 gi|226184041|dbj|BAH32145.1| hypothetical membrane protein [Rhodococcus erythropolis PR4]
          Length = 501

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 101/194 (52%), Gaps = 14/194 (7%)

Query: 72  VIISITISLL-LGYISGSILKELFISYNRISQLS-RIDCLSGLLNHSAFI-------SSL 122
           VI SI ++L+ LG I+ +   E   +  R   L+   D L+G+L+  AF+       ++ 
Sbjct: 266 VITSIAVTLIALGPIAVACATEERRAAERELFLAVEFDHLTGVLSRGAFLGHAESELAAA 325

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                 + ++  D+D+FK IND  GH  GD V+A  +++          +GRLGGEEFA 
Sbjct: 326 ARTQSPVGLLMLDLDHFKSINDTHGHMTGDSVLANFAERAADRLSDGDLIGRLGGEEFAI 385

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRAD 241
                S   A     D+ + +  +Q+  S+   +  T+S G+A   H  P ++T++  AD
Sbjct: 386 LLPDCSYARAV----DVAEAVRGAQVEYSAESEVTSTVSVGVAWVDHATPTLTTLMSVAD 441

Query: 242 QALYVAKKSGRNRV 255
           +ALY AK++GRN V
Sbjct: 442 EALYEAKRAGRNLV 455


>gi|186472688|ref|YP_001860030.1| diguanylate cyclase [Burkholderia phymatum STM815]
 gi|184195020|gb|ACC72984.1| diguanylate cyclase [Burkholderia phymatum STM815]
          Length = 359

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 92/186 (49%), Gaps = 12/186 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IV 132
           L LG+ S  +  +L      +  LSR D L+ L N   +   L    E+         ++
Sbjct: 164 LALGFTSYRLSLKLAQRTRELEHLSRTDGLTRLWNRRHWEGLLADEFERCRANRYASCLM 223

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK+IND  GHP GD V+   +D L   F     +GR GGEEF     G++ +EA
Sbjct: 224 LIDLDHFKRINDTMGHPAGDAVLQSFADLLRSHFRGGDSIGRYGGEEFGVVLPGATLREA 283

Query: 193 AILANDL-RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKS 250
             +A  L +++ E ++      P    TIS GIA+     P   T +   D++LY AK +
Sbjct: 284 HTIAKVLVQRVREKTKEASKECPC---TISVGIAQLTDDLPDYHTWLQEVDRSLYQAKAT 340

Query: 251 GRNRVV 256
           GR+R+V
Sbjct: 341 GRDRIV 346


>gi|91225485|ref|ZP_01260607.1| putative GGDEF domain protein [Vibrio alginolyticus 12G01]
 gi|91189848|gb|EAS76121.1| putative GGDEF domain protein [Vibrio alginolyticus 12G01]
          Length = 456

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 10/148 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL-----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GL N   F  S   +  +L     S++  D D  K+IND++GH VGD+VI  ++D 
Sbjct: 308 DDLTGLFNRRVFQDS--EFKRRLETAPYSVIAIDGDRIKRINDHYGHHVGDEVIGIIADA 365

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +  VF    ++ R GG+EF A   G S  +++ILA  LR +++++++       I +++S
Sbjct: 366 MSKVFRNSDYLVRTGGDEFVAILPGCSISQSSILAKKLRSVVKDNRLKT---LDIEVSVS 422

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKK 249
            GIA     E +  +I RAD+ LY  KK
Sbjct: 423 TGIAANELHETLQDVIVRADEDLYEMKK 450


>gi|27365860|ref|NP_761388.1| diguanylate cyclase [Vibrio vulnificus CMCP6]
 gi|27362009|gb|AAO10915.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           vulnificus CMCP6]
          Length = 320

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 92/183 (50%), Gaps = 20/183 (10%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDY 138
           S + LKE   + + +S++SR D L+GL N + +  SL     ++       S+V FDID+
Sbjct: 142 SKTHLKE---TNHHLSEISRRDGLTGLFNRAFWEQSLKEEFSRMQFLDTPSSLVIFDIDH 198

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++ND +GH  GD+VI   +  L          GR GGEEF      +S  +A   +  
Sbjct: 199 FKKVNDTYGHHAGDEVIRRTASLLKKTARNSDLCGRFGGEEFTVMLPHTSADQARYFSER 258

Query: 199 LRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRN 253
           LRK IE   + +    +I+ TIS G+ E       H E +      AD ALY +K+ GRN
Sbjct: 259 LRKRIEQEIVCVEKF-AINYTISLGVCEFDAKFTSHTEWLKA----ADSALYHSKEGGRN 313

Query: 254 RVV 256
           +  
Sbjct: 314 QTT 316


>gi|317054192|ref|YP_004118217.1| diguanylate cyclase [Pantoea sp. At-9b]
 gi|316952187|gb|ADU71661.1| diguanylate cyclase [Pantoea sp. At-9b]
          Length = 369

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 15/204 (7%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQ----LSRIDCL------SGLLNHSA 117
           N    II +  +L+L Y    +L+    ++ R  Q    +SR+D L      +G  N  A
Sbjct: 165 NPRFAIIWLIFTLILLYGRYMLLRWFNEAWQRYEQNQLLISRLDILAHQDGLTGTANRRA 224

Query: 118 FISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVG 173
               L    +     S++  D+DYFK+ ND++GH  GD+ +  ++  L     TP   VG
Sbjct: 225 LEQHLAQAITQQRPFSLIMLDVDYFKRYNDHYGHQAGDECLVAVAAVLKEAVRTPEDVVG 284

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEP 232
           R GGEEF    L ++  +A  +A  +++ ++   + +  S  +  +T+S GIA       
Sbjct: 285 RYGGEEFVVMLLDATAAQAEAVAERIQQQLQQRGLAHAKSEVAAQVTVSQGIASAAPGRT 344

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
              +I +ADQALY AK+ GRNR V
Sbjct: 345 ADQLIAQADQALYRAKQQGRNRWV 368


>gi|187928260|ref|YP_001898747.1| PAS/PAC sensor containing diguanylate cyclase [Ralstonia pickettii
           12J]
 gi|187725150|gb|ACD26315.1| diguanylate cyclase with PAS/PAC sensor [Ralstonia pickettii 12J]
          Length = 416

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 93/179 (51%), Gaps = 16/179 (8%)

Query: 88  SILKELFISYNRISQLSRI---DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDID 137
           S+ K++     R   L R    D L+GL N        +    +  +    L++V  DID
Sbjct: 239 SVSKDITKRVEREQALLRAATKDKLTGLHNRHHGEQLLAERYRTARTLQRPLTLVMCDID 298

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK+IND FGHP GD+V+A ++D L     +   V R GGEEF       S+ +   LA 
Sbjct: 299 HFKRINDEFGHPTGDRVLAEVADMLRQAVRSRDAVIRWGGEEFMIVLDECSQTDTVDLA- 357

Query: 198 DLRKIIENSQINI-SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             ++I++  ++N    G    +T+S G+A     E I  +I RAD ALY AK++GRNR+
Sbjct: 358 --KRILD--RVNAHEDGEVPALTLSLGLATLAPDEAIDELIARADSALYDAKRAGRNRL 412


>gi|114045907|ref|YP_736457.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113887349|gb|ABI41400.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 625

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 98/185 (52%), Gaps = 13/185 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQI 142
           L+EL     ++++ S ID L+G+ N SAF   L + +         ++++  DID FK I
Sbjct: 440 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLLAESRISRRQETPIALLMLDIDRFKSI 499

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD+ +  ++  L      P   V R GGEEFA     ++   A  +A ++R 
Sbjct: 500 NDQFGHLAGDQALKVIATTLQQHLKRPTDLVSRFGGEEFAIILPNTTADGALQVAENIRD 559

Query: 202 IIENSQINIS-SGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +  + I ++  G  I +T+S G++     + +  + ++ +AD+ALY AK SGRN+V  +
Sbjct: 560 AV--TSIGLAWEGKPIPLTVSIGVSADVISNDQHSTELLEQADKALYQAKNSGRNQVKLY 617

Query: 259 SDIEN 263
           +  + 
Sbjct: 618 APAQT 622


>gi|304438520|ref|ZP_07398460.1| diguanylate cyclase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304368603|gb|EFM22288.1| diguanylate cyclase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 600

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 12/166 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +   ID L+G+ N + F S++  +        E LS+V FDID+FK IND +GH  GD
Sbjct: 401 VKKRMEIDPLTGVYNRNRFPSAMRDFTKIARDTGEPLSLVMFDIDHFKSINDTYGHDAGD 460

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+   +  +         + R GGEEF    L     +A   AN +R+ +  +++  + 
Sbjct: 461 EVLFGFAQTIRSFLDRRHILIRWGGEEFILLCLHYDGAKAQAFANQIREGVAKARLLTAQ 520

Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                +T S GI       +  + ++ RAD ALY +K+ GRNR+ C
Sbjct: 521 ----QVTCSGGIGVWHGPDDDAAALVKRADTALYASKEGGRNRISC 562


>gi|254718593|ref|ZP_05180404.1| GGDEF domain protein [Brucella sp. 83/13]
 gi|265983569|ref|ZP_06096304.1| predicted protein [Brucella sp. 83/13]
 gi|306839889|ref|ZP_07472687.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653]
 gi|264662161|gb|EEZ32422.1| predicted protein [Brucella sp. 83/13]
 gi|306405075|gb|EFM61356.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653]
          Length = 381

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 82/164 (50%), Gaps = 13/164 (7%)

Query: 101 SQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           S+ S ID LS + N   F   +         +   +I+  D+DYFK++ND +GH  GD+V
Sbjct: 219 SEQSEIDALSQIYNRRGFDRHVMRRLMRKGPDTPYAIIMSDLDYFKRVNDTYGHDCGDRV 278

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213
           I      L           R+GGEEF    LG+     A+ A+DL + +  +   +S SG
Sbjct: 279 IEAFGGLLRTHLPKLAVAARMGGEEFVVFMLGAD----AVAAHDLAQTLRTTMTALSFSG 334

Query: 214 PSIHI--TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +     T S G+AE    E +   I RAD ALY AKK+GRNRV
Sbjct: 335 DAAEWMPTASFGVAEHRVGEGLYDTIRRADGALYEAKKAGRNRV 378


>gi|271498992|ref|YP_003332017.1| diguanylate cyclase [Dickeya dadantii Ech586]
 gi|270342547|gb|ACZ75312.1| diguanylate cyclase [Dickeya dadantii Ech586]
          Length = 501

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 18/226 (7%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY---ISGSILKELFI-----SYN 98
           NIFL    + P +G + ++ +N       + I+LL      I+ SI   L I     +Y 
Sbjct: 275 NIFL-NTRVIPEFGWKLMVEQNSGPHDRQLWITLLKNTGISITASIAMLLLIWLTIGAYQ 333

Query: 99  R-ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           R +  ++  D L+GL+N  AF            +     SI+  D+D+FK+IND +GH +
Sbjct: 334 RRLELMATTDKLTGLMNRQAFEYIFRTLRMKQSAQQRTFSIILIDLDFFKKINDQYGHHI 393

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+   +  +           R GGEEF       S  +A  +A  +R+ +  + ++ 
Sbjct: 394 GDRVLVKTARLIQRAIRKTDSACRWGGEEFVLLLGDCSLHQAHRVAEKIRQAVHFALVS- 452

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                I++TIS G+AE    E I  ++ RAD+ALY AK+ GR++ V
Sbjct: 453 HRHQVINLTISCGVAESNPGESIDHLVQRADKALYQAKRQGRDQAV 498


>gi|258515904|ref|YP_003192126.1| diguanylate cyclase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779609|gb|ACV63503.1| diguanylate cyclase [Desulfotomaculum acetoxidans DSM 771]
          Length = 368

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 123/236 (52%), Gaps = 13/236 (5%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           ++I +   IFI++I  FY+ LT    L  +L   L   I +I ++  + Y++   +K L 
Sbjct: 132 YAICVIYAIFISSI-AFYLVLTNNNVLVKVL---LYFSIGTIIVTYFMYYLTEFHIK-LN 186

Query: 95  ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
             Y +    ++ D L+GL N   F       +++    +  +S++F DID+FK+IND +G
Sbjct: 187 SLYRKFRSEAKQDFLTGLNNVRGFDEEINFLMNNSKQTSHVVSLLFIDIDFFKKINDTYG 246

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD ++  L+D L  +      V R GGEEF+         +A  +A  +R IIE   
Sbjct: 247 HIAGDAILIELADLLPKLCSYKDTVSRNGGEEFSIILRDCPLSKAIEVAERIRSIIEKYP 306

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             + +   I+IT+S G+A      + I+ +I +AD +LY AK++GRN+V    D E
Sbjct: 307 FKLLNNNIINITVSIGVANYPDTIDEINKLIEKADTSLYKAKRTGRNKVSIIQDDE 362


>gi|113971888|ref|YP_735681.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113886572|gb|ABI40624.1| diguanylate cyclase [Shewanella sp. MR-4]
          Length = 625

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 98/185 (52%), Gaps = 13/185 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQI 142
           L+EL     ++++ S ID L+G+ N SAF   L + +         ++++  DID FK I
Sbjct: 440 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLLAESRISRRQETPIALLMLDIDRFKSI 499

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD+ +  ++  L      P   V R GGEEFA     ++   A  +A ++R 
Sbjct: 500 NDQFGHLAGDQALKVIATTLQQHLKRPTDLVSRFGGEEFAIILPNTTADGALQVAENIRD 559

Query: 202 IIENSQINIS-SGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +  + I ++  G  I +T+S G++     + +  + ++ +AD+ALY AK SGRN+V  +
Sbjct: 560 AV--TSIGLAWEGKPIPLTVSIGVSADVISNDQHSTELLEQADKALYQAKNSGRNQVKLY 617

Query: 259 SDIEN 263
           +  + 
Sbjct: 618 APAQT 622


>gi|27367394|ref|NP_762921.1| GGDEF domain-containing protein [Vibrio vulnificus CMCP6]
 gi|27358963|gb|AAO07911.1| FOG: GGDEF domain protein [Vibrio vulnificus CMCP6]
          Length = 337

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 85/162 (52%), Gaps = 5/162 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           N++S+L+ +D L+G  N  A      +L +      ++  DID+FK IND +GH  GD V
Sbjct: 177 NKLSKLATLDPLTGTNNRLALKHRYQALKTQGTAFFLLVLDIDHFKAINDEYGHDGGDCV 236

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +   +  V G    V R GGEEF     G S Q A   A  +R+ I ++ I+   G 
Sbjct: 237 LRSVVKTMAHVVGEEN-VFRQGGEEFCILLAGVSHQHALKTAETIRQNIGDTPIHYREG- 294

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +I +T+S G+AE      +  I  +AD  LY AK  GRNRVV
Sbjct: 295 AISVTVSIGLAEAHASSCVDEINRQADANLYDAKSQGRNRVV 336


>gi|330446060|ref|ZP_08309712.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490251|dbj|GAA04209.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 446

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 107/220 (48%), Gaps = 18/220 (8%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQL 103
           F+ ++    +  TP     +I ++ LS+      IS +L Y   SIL   F+++    +L
Sbjct: 241 FLPSVKKIKLPCTPIKSEYFITIDWLSV------ISWVLVY--SSILSLFFMAFEYSRKL 292

Query: 104 SRI----DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
             +    D ++GL+    F     S  +  +++  DID FK INDN GH +GD VI  +S
Sbjct: 293 INLAISKDKMTGLMRRDVFERCYKSKQKDCAVIIVDIDNFKLINDNHGHLIGDDVIRKVS 352

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L+    T     R GGEEF       ++ E A  A  +RK I  + I   SG  + ++
Sbjct: 353 RILLNSIRTDDIAIRWGGEEFVILLDIYNKDEIAKRAESIRKQIAENTI---SGMIVTVS 409

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I   I++     P       AD ALY AKK+GRN+VVC++
Sbjct: 410 IGVCISKDI---PFEAKFKHADDALYQAKKNGRNQVVCYA 446


>gi|167032619|ref|YP_001667850.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas putida
           GB-1]
 gi|166859107|gb|ABY97514.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida GB-1]
          Length = 796

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 14/206 (6%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           P  GL ++  E  +  +     +L  GY++   + +L      +  LS  D L+G+ N  
Sbjct: 593 PRAGLRWVRGEA-TPEVGEQGCTLWHGYLTD--ISDLKGVEEELRALSVTDSLTGIHNRR 649

Query: 117 AFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            F   L    E+       L+++  DID+FK+IND FGH VGD+V+  L  ++       
Sbjct: 650 YFQERLKVELERAQRDGLALAVIMLDIDHFKRINDRFGHAVGDRVLRSLCQRIGQRLRRT 709

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               RLGGEEF     GS  ++A +LA +L + + N  +         +T S G+A    
Sbjct: 710 DVFCRLGGEEFMVLCPGSDAEQARLLALELWQGVRNMPVEGVG----RVTASFGVAGWRP 765

Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255
           +E    ++ RAD  +Y AK++GR+RV
Sbjct: 766 EEGADALLLRADAGVYAAKQAGRDRV 791


>gi|152994781|ref|YP_001339616.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150835705|gb|ABR69681.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 508

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 8/158 (5%)

Query: 107 DCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N +A+  +       +    + + +   DID+FK++ND +GH  GDKV+  + 
Sbjct: 350 DSLTDLPNRTAYQDAILPLCKIMQKTQKSICLAVCDIDHFKKVNDTWGHLAGDKVLRLVP 409

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            Q+         + R GGEEF  A   ++ ++A   A  +R  +  +  N+   P + I+
Sbjct: 410 KQIRSALLKEDLMFRYGGEEFVIAFPETTLEQAVERAEAIRLAVAKTPFNMQGEP-VSIS 468

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IS GIAE   +E   ++  RAD+ LY+AK++GRNRV+ 
Sbjct: 469 ISIGIAELQAQENPESLFARADKQLYMAKEAGRNRVMA 506


>gi|289549058|ref|YP_003474046.1| diguanylate cyclase [Thermocrinis albus DSM 14484]
 gi|289182675|gb|ADC89919.1| diguanylate cyclase [Thermocrinis albus DSM 14484]
          Length = 459

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 84/161 (52%), Gaps = 9/161 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F       + +   YN  LS+V  D+D FK +ND +GH +GD V+  L+
Sbjct: 299 DSLTGLPNRRFFFEHAQILLENAKRYNLPLSLVMLDVDNFKSLNDTYGHQLGDAVLINLA 358

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L  +        RLGGEEF      +  + A  LA  +R   E S + + +G  ++ T
Sbjct: 359 NILKSMVRHSDVPARLGGEEFGILLPNTPLEGAVSLAQRIRIAFEGSVV-LHNGVEVYTT 417

Query: 220 ISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +SAG+A      + +  +I RAD ALY AK  G+NRV  F+
Sbjct: 418 LSAGVATYTPDVKSLDELIRRADVALYRAKNMGKNRVEVFT 458


>gi|209770334|gb|ACI83479.1| hypothetical protein ECs2129 [Escherichia coli]
          Length = 315

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 99/189 (52%), Gaps = 10/189 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129
           ++ I  I +S  +  I+ S++K++ +  +    L+++   SGL  + A  S      + L
Sbjct: 120 TMAICPIMVSFSVAAIN-SLMKQVALRAD-FDFLTQVYSRSGL--YEALKSPSLKQTQHL 175

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DIDYFK INDN+GH  GDKV++  +  +  + G    V R+GGEEFA A    + 
Sbjct: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQAL 244
            +  ++A  +RK +E          ++++T+S G+       R   +  + ++  AD  L
Sbjct: 236 VDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSIGVGSGRASYRTLTDDFNKLMVEADTCL 294

Query: 245 YVAKKSGRN 253
           Y +KK GRN
Sbjct: 295 YRSKKDGRN 303


>gi|117922165|ref|YP_871357.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117614497|gb|ABK49951.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 625

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 98/185 (52%), Gaps = 13/185 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQI 142
           L+EL     ++++ S ID L+G+ N SAF   L + +         ++++  DID FK I
Sbjct: 440 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLLAESRISRRQETPIALLMLDIDRFKSI 499

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD+ +  ++  L      P   V R GGEEFA     ++ + A  +A  +R 
Sbjct: 500 NDQFGHLAGDQALKVIATTLQQHLKRPTDLVSRFGGEEFAIILPNTTAEGAIQVAESIRD 559

Query: 202 IIENSQINIS-SGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +  + I ++  G  I +T+S G++     + +  + ++ +AD+ALY AK SGRN+V  +
Sbjct: 560 AV--TSIGLAWEGKPIPLTVSIGVSADVISNDQHSTELLEQADKALYQAKNSGRNQVKLY 617

Query: 259 SDIEN 263
           +  + 
Sbjct: 618 APAQT 622


>gi|227821649|ref|YP_002825619.1| response regulator PleD [Sinorhizobium fredii NGR234]
 gi|227340648|gb|ACP24866.1| two component response regulator [Sinorhizobium fredii NGR234]
          Length = 455

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 9/177 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           +L  S     +L+  D L+GL N     S L        +    LSI   DID FK +ND
Sbjct: 278 QLRASVQHTIELAITDDLTGLHNRRYLDSHLKLLIDRARARGRPLSICITDIDRFKLVND 337

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+V+   + ++           R GGEEF      ++ + AAI+A  LR ++E
Sbjct: 338 THGHDAGDEVLREFARRVRATVRGADLACRFGGEEFVIVMPDTTPEMAAIVAERLRLMVE 397

Query: 205 NSQINISSGPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                IS G ++ ++T S GIA  R   +    ++ RAD ALY AK +GRNRVV  +
Sbjct: 398 GRAFGISQGDTVLNVTASLGIATLRPGDDTPEALLKRADTALYEAKNNGRNRVVAAA 454


>gi|218676052|ref|YP_002394871.1| GGDEF family protein [Vibrio splendidus LGP32]
 gi|218324320|emb|CAV25654.1| GGDEF family protein [Vibrio splendidus LGP32]
          Length = 405

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 9/161 (5%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N  A    L         +N  LS++  DID+FKQ+ND  GH  GD+V+  + 
Sbjct: 228 DSLTQLYNRRAMNEMLRREWMRSVRHNHPLSVIILDIDHFKQVNDQHGHQTGDQVLKKIG 287

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L           R GGEEF      +   EA  +A  LR IIE ++       S ++T
Sbjct: 288 IILQHNLRAADIPFRYGGEEFLIVLPDTRIGEACKVAEKLRIIIEETK--FWRQQSANLT 345

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            S G++E   ++ + ++I RAD+ALY AK++GRN V   +D
Sbjct: 346 ASFGLSELWAEDKVPSMIKRADEALYYAKENGRNTVCALTD 386


>gi|331005508|ref|ZP_08328886.1| response regulator receiver domain protein (CheY-like) [gamma
           proteobacterium IMCC1989]
 gi|330420700|gb|EGG94988.1| response regulator receiver domain protein (CheY-like) [gamma
           proteobacterium IMCC1989]
          Length = 594

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 83/162 (51%), Gaps = 11/162 (6%)

Query: 106 IDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+GL N  A+   +         Y   LS+   DID+FK++ND +GH +GDKV+  +
Sbjct: 431 TDKLTGLPNREAYSERVHDEMLRWQRYQHPLSLAVLDIDFFKKVNDQYGHQMGDKVLKAV 490

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI--SSGPSI 216
           S  +        F+ R GGEEF      +S ++A  + N  R+ +  +Q+    S G   
Sbjct: 491 SSSVANRLREVDFIARFGGEEFVLLLPETSAEDALHMLNRTRERLAKTQMKSKNSDGEET 550

Query: 217 H--ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              +T S GIA+    +    +  RAD+ALY AK++GRN+ V
Sbjct: 551 KFTVTFSIGIAQFTDGDTADDVFERADKALYEAKENGRNQCV 592


>gi|268679219|ref|YP_003303650.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617250|gb|ACZ11615.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 315

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 93/183 (50%), Gaps = 15/183 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEK---LSIVFFDID 137
           ++   + +L +   R+ + S ID L+   N    +  L        EK   + +V FD D
Sbjct: 135 VADETIAKLKLEVERLERESNIDPLTKTHNRRVLVKDLEEVLSFGKEKDLDMHLVMFDAD 194

Query: 138 YFKQINDNFGHPVGDKVIAFLSD--QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
            FK IND FGH  GDK + FLS   Q  +  GT ++  R GGEEF      +S  EA  +
Sbjct: 195 DFKSINDAFGHIAGDKTLIFLSKLIQNSLRRGTRIY--RYGGEEFVVILNRTSLDEAIKI 252

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + + K   +S++ +     IH+T+SAGI        +  I+ +AD+ALY AKKSG+N  
Sbjct: 253 IDRILKETSDSKL-LYKNHDIHLTLSAGICSHRQNMSVDEILDKADKALYEAKKSGKN-- 309

Query: 256 VCF 258
            CF
Sbjct: 310 -CF 311


>gi|254457084|ref|ZP_05070512.1| ggdef domain protein, putative [Campylobacterales bacterium GD 1]
 gi|207085876|gb|EDZ63160.1| ggdef domain protein, putative [Campylobacterales bacterium GD 1]
          Length = 722

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 10/164 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ +++ ID L+G+LN   F       I     Y   LS +  DID FK +ND +GH +G
Sbjct: 554 KLEKIAFIDILTGVLNRRKFGEISNKEIERSTRYGRNLSFLMLDIDNFKSLNDTYGHALG 613

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DKV+   S   + +  +   + R+GGEEFA        + A + A   R+ I +SQ++I 
Sbjct: 614 DKVLQHFSSTCLNMARSIDVIARIGGEEFAIMLPEVDAEGAYLFAERFREKIYSSQVHIE 673

Query: 212 SGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
               I  ++S GIA  +    + +  I+ +AD+ALY AK+SG+N
Sbjct: 674 D-KIIKYSVSIGIATLDGDKDKEVKDILQKADKALYRAKESGKN 716


>gi|152996045|ref|YP_001340880.1| response regulator receiver modulated diguanylate cyclase
           [Marinomonas sp. MWYL1]
 gi|150836969|gb|ABR70945.1| response regulator receiver modulated diguanylate cyclase
           [Marinomonas sp. MWYL1]
          Length = 312

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 9/165 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + QL+  D L+G+ N  +F       +S    Y   +++  FD+D FK +ND FGH  GD
Sbjct: 141 LEQLASTDHLTGVANRRSFELMLDREMSFTRRYGVPMALAMFDLDKFKLVNDTFGHDAGD 200

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  +S ++ +       +GRLGGEEF        E +   + +  RKI+ +  I +  
Sbjct: 201 AVLVEVSKRIKIALRDCDIIGRLGGEEFGIILHNVKEDDVFKVFDRYRKIVADHPI-LYE 259

Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           G  I IT S G+     K E    ++ R DQ+LY AK +GRN+V+
Sbjct: 260 GAEIPITASIGVTMYAGKLEDKVALLKRVDQSLYEAKATGRNKVI 304


>gi|299069876|emb|CBJ41158.1| Diguanylate cyclase (GGDEF domain) fused with response regulator
           pleD (Stalked cell differentiation-controlling protein)
           [Ralstonia solanacearum CMR15]
          Length = 467

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 103/231 (44%), Gaps = 15/231 (6%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI---LKELF 94
           ++A +IF A  FL   G+       +    + S +     +   LG         L+EL 
Sbjct: 240 WLAHIIFAAGFFLLSYGVVK----AFQTTRSFSTIYSQEELMTRLGEAKARTEDALRELQ 295

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFG 147
            +++++  L+  D L+GL N   FI  + +   +        S++  D+D FK IND +G
Sbjct: 296 AAHHKLEHLAATDPLTGLANRREFIGRVEAEIARSRGGPTPFSVLALDLDRFKVINDTYG 355

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+   + + +        V R+GGEEF           A  +A  +R  I  S 
Sbjct: 356 HQAGDHVLQRFAKKCLEAIRPHDGVARVGGEEFMVLLPKVPLHAAHAIAEQIRTAIAASP 415

Query: 208 INISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
             +  G  + +T+S G++E       I  I+  AD+ LY AK  GRNRV+ 
Sbjct: 416 FELGPGHVVPVTVSIGVSEFGRDGANIDAILRSADERLYRAKHEGRNRVIA 466


>gi|298485896|ref|ZP_07003972.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298159585|gb|EFI00630.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 425

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 95/188 (50%), Gaps = 22/188 (11%)

Query: 85  ISGSILKELFISYNRISQLSR---------IDCLSGLLNHSA-------FISSLGSYNEK 128
           + G+I   + IS +  ++L R          D L+GL N  A        I +     + 
Sbjct: 233 LEGTITHYVSISQDVTTRLGREQKLLEIAHSDPLTGLNNRRAAEHTLERLIDTARISGKP 292

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            S++  DID+FK +ND +GHP GD+V+  ++  L           R GGEEF      SS
Sbjct: 293 FSLIIGDIDHFKSVNDRYGHPAGDRVLTSVAVILKQRIRLQDVAARWGGEEFLILVPDSS 352

Query: 189 EQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
              AA LA+ +R+ +E   I N  S     +TIS G+A+    E  +++I RAD+ALY A
Sbjct: 353 LDHAAELADRIREGVEGLLIPNTGS-----VTISLGVAQLSPGETAASLIQRADKALYQA 407

Query: 248 KKSGRNRV 255
           K+ GRNRV
Sbjct: 408 KRLGRNRV 415


>gi|28900411|ref|NP_800066.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|28808722|dbj|BAC61899.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633]
          Length = 480

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 95/167 (56%), Gaps = 7/167 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           K+L ++  ++ +L+  D L+ L N    I   ++L S  + ++++ FDID FK IND +G
Sbjct: 297 KQLTLANQQLLELTLTDPLTKLYNRRHLIERLATLSSLQKNVTVMVFDIDDFKSINDKYG 356

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD+ I  ++D    +    + + R+GGEEFA      SE+EA  LA  +   + +  
Sbjct: 357 HLIGDQAIVAVADTAKSLTDERITLARIGGEEFALVTASLSEKEAETLAKAICSCVYDRP 416

Query: 208 INISSGPSIHITISAGIAERCHKEPISTI-IYRADQALYVAKKSGRN 253
           + + +G +IH+++S G A   ++E    I ++ ADQ +Y  K +G+N
Sbjct: 417 V-LLNGQAIHVSVSLGCA--YYREFKGIINLHEADQLMYCGKMNGKN 460


>gi|258514837|ref|YP_003191059.1| response regulator receiver modulated diguanylate cyclase
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778542|gb|ACV62436.1| response regulator receiver modulated diguanylate cyclase
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 314

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL     ++ Q++  D L+G+ N        +  +S +    +  S++  DID FK IN
Sbjct: 139 EELQQLLQKVEQIAITDFLTGITNRRFAIDRMNEELSRINRGEDGFSLLMIDIDNFKDIN 198

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GD ++  + + +  V      + R GGEEF      +   +A I+A    KII
Sbjct: 199 DSHGHECGDYILKDVVNLIKSVLRNYDMMARWGGEEFLVMLPSTEINDAKIVA---EKII 255

Query: 204 EN--SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            N  +QI    G S H+TI+AG+A+    + + +II RAD+A+Y  KKSG+N
Sbjct: 256 SNVRTQIFTYKGNSFHVTITAGVAQHQAGDDLDSIIKRADEAMYHGKKSGKN 307


>gi|220933268|ref|YP_002512167.1| diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994578|gb|ACL71180.1| diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 444

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 92/172 (53%), Gaps = 10/172 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +LS  D L+GL N  AF  ++ +       + +  S++  D+D FK +ND  GH +GD
Sbjct: 261 LERLSLTDPLTGLGNRRAFDQNIEADMALFRRHGDISSLLVLDLDCFKGLNDTHGHDIGD 320

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+   +D L         V RLGGEEFA     + E  A  +A  LR+ +E   +N+  
Sbjct: 321 LVLCQFADVLQGHARETDEVCRLGGEEFAVFLRRADEDGAMAMAEKLREAVEAMVVNVDD 380

Query: 213 GPSIHITISAGIAERCHKEPIST--IIYR-ADQALYVAKKSGRNRVVCFSDI 261
              I +T+S G+A    +  I++   +Y+ ADQA+Y +K++GRNRV  +  +
Sbjct: 381 ALKISVTVSIGVATLSTRLRITSALALYKAADQAMYASKQAGRNRVTHYDSL 432


>gi|167951332|ref|ZP_02538406.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 622

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 90/167 (53%), Gaps = 11/167 (6%)

Query: 96  SYNRISQLSRIDCLSGLLN----HSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGH 148
           S  R  QL++ D L+GL N    H     +L   N     L+++F D+D FKQIND FGH
Sbjct: 190 SQERYQQLAQHDTLTGLPNRLLFHDRLNHALNRANRSKIGLALLFLDLDRFKQINDAFGH 249

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQ 207
           P+GD+++A ++  L+        + RLGG+EF     G   ++  I +A  L  +I   +
Sbjct: 250 PMGDRLLALVAKDLLEALREEDTIARLGGDEFVVILEGVHGRDHVINVAEKLLAVI-GRE 308

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
            ++ S   +HI +S GI+      E ++T++  AD A+Y AK  GRN
Sbjct: 309 RSLDS-LQMHIGVSIGISLYPEDGEDVTTLVRNADAAMYQAKAKGRN 354


>gi|90021551|ref|YP_527378.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89951151|gb|ABD81166.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 603

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 114/264 (43%), Gaps = 35/264 (13%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL- 82
           P+ FM       ++ I  + F+  +     G  P     Y ++   +L+   I   L + 
Sbjct: 319 PYAFMAPVMTVLTLTIMPLFFVMGVLRLASGYRP---ARYFMLAWTALIFSVIVYVLKVF 375

Query: 83  -----------GYISGSILKELFIS------YNRISQLSRIDCLSGLLNHSAF------- 118
                      G+  GSI++ + +S         + Q S  D L+ + N   F       
Sbjct: 376 GVLPRTFFTENGFQIGSIIEMVLLSLALGSRMTELKQQSHTDALTEIGNRRRFDDVFPVE 435

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                   + L+++  DIDYFK++ND FGH  GD+ +  ++  +  +   PM   R GGE
Sbjct: 436 FERAQRNKQPLALLMIDIDYFKKLNDTFGHDAGDQALRAVATTIKTLTRKPMLPCRFGGE 495

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTI 236
           EFA     +    A I+A  +R+ I    +         +T+S G+A  +  +      I
Sbjct: 496 EFAVILPRTDSAAAKIVAERIRQTIAEKPMA-----KREVTVSVGVASTDMGYFTSSRAI 550

Query: 237 IYRADQALYVAKKSGRNRVVCFSD 260
           +  AD+ LY+AK+ GRNRV  FS+
Sbjct: 551 MNAADECLYLAKEMGRNRVCLFSE 574


>gi|332533494|ref|ZP_08409357.1| GGDEF domain protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037041|gb|EGI73499.1| GGDEF domain protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 617

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 92/180 (51%), Gaps = 11/180 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQI 142
           L+EL      +  L+  D L+G+ N   F   L      S  E+  LSIV  DID FK I
Sbjct: 436 LRELEEKNRSLELLNTEDALTGIKNRRFFDKKLVMELRRSRREQTPLSIVMLDIDRFKNI 495

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH +GD+VI  +SD +      P+  V R GGEEF      +  + A  +A  +R 
Sbjct: 496 NDTYGHIIGDQVIKAVSDLIKDHLKRPLDEVARYGGEEFVVLLPNTPSEGAQDIAEKIRA 555

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR--ADQALYVAKKSGRNRVVCFS 259
            I  S + +++   I  TISAG+      +  +  I+   AD+ALY AK+ GRN+V+ F 
Sbjct: 556 DISVSTVTVANN-DIQFTISAGVYTSIADDVSNPQIFTECADKALYYAKQHGRNQVITFP 614


>gi|313496500|gb|ADR57866.1| Diguanylate cyclase [Pseudomonas putida BIRD-1]
          Length = 645

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG----SYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q + +D L+GL N +A+   +      + E    L++   D+D+FK+INDN+GH  GDKV
Sbjct: 483 QKALLDPLTGLPNRAAWSERVEREMLDWQENGGHLAMAILDLDHFKRINDNYGHLAGDKV 542

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++DQL        F+ R GGEEF      ++   AA +A  LR  +E    +   G 
Sbjct: 543 LKIVADQLRKRLRGRDFIARFGGEEFVLLLPQTTPAVAAQVAEVLRATVEACPFHF-KGE 601

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT S G++     E    ++ RAD ALY AK+ GRNRV
Sbjct: 602 RVVITTSIGLSAFRSGERSDQVLKRADAALYRAKELGRNRV 642


>gi|310765223|gb|ADP10173.1| HmsT (Hemin storage system protein) [Erwinia sp. Ejp617]
          Length = 365

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 7/185 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQ 141
           +  ++++L+        LS +D L+GL N     + L    +K +    ++  DID+FK 
Sbjct: 173 TRRLVRQLYEEKETYCDLSMLDPLTGLYNRRGLKNRLADILDKHTGNHYVLLLDIDHFKA 232

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            NDN+GH +GD+ +  +S  +     +   V R GGEEF      ++E  A   A  +R+
Sbjct: 233 YNDNYGHAMGDQALTRVSVAIRDAVRSRDIVTRYGGEEFLVLLTNATESMAIKQAERIRE 292

Query: 202 IIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +   +I    ++  + H+TIS G+A     +     +  AD+ALY+AK  GRNRV+   
Sbjct: 293 FVLGLEIPHRFNNQVATHVTISVGVAP-LMADDFDKALAHADRALYLAKSRGRNRVIHLQ 351

Query: 260 DIENN 264
           D  N 
Sbjct: 352 DALNR 356


>gi|293404969|ref|ZP_06648961.1| diguanylate cyclase yddV [Escherichia coli FVEC1412]
 gi|298380616|ref|ZP_06990215.1| diguanylate cyclase yddV [Escherichia coli FVEC1302]
 gi|300895690|ref|ZP_07114287.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1]
 gi|291427177|gb|EFF00204.1| diguanylate cyclase yddV [Escherichia coli FVEC1412]
 gi|298278058|gb|EFI19572.1| diguanylate cyclase yddV [Escherichia coli FVEC1302]
 gi|300360384|gb|EFJ76254.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1]
          Length = 460

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 335 DKFKEINDTWGHNTGDEILRKISQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454

Query: 257 CFS 259
            + 
Sbjct: 455 LWK 457


>gi|188997382|ref|YP_001931633.1| diguanylate cyclase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932449|gb|ACD67079.1| diguanylate cyclase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 411

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 86/159 (54%), Gaps = 8/159 (5%)

Query: 106 IDCLSGLLNHSAF---ISSLGSYNE----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+G  N   F   I  L   ++     +++   D+DYFK+IND FGH  GD+ +   
Sbjct: 254 IDPLTGAFNRRGFEIIIQKLLEISQITDAPITLAMADLDYFKKINDTFGHLAGDEALKHF 313

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
            + +        +V R+GGEEF      +  ++A  +   +RK +E + ++   G  I I
Sbjct: 314 VNIIKRNLRKSDYVFRIGGEEFLILLPNTELKDAVEIVERIRKDLEENSLHYD-GKEIKI 372

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           T S G+AE   ++ I+ II +AD+ LY AK+SGRN+VV 
Sbjct: 373 TASFGLAEVDKEKYINEIIKKADEKLYKAKESGRNKVVV 411


>gi|91227127|ref|ZP_01261611.1| putative sensory box/GGDEF family protein [Vibrio alginolyticus
           12G01]
 gi|91188779|gb|EAS75066.1| putative sensory box/GGDEF family protein [Vibrio alginolyticus
           12G01]
          Length = 626

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 89/172 (51%), Gaps = 21/172 (12%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHP 149
           ++  LS  D L+GL N   F   L  Y         +    +  FDID+FK+IND  GH 
Sbjct: 460 KLRNLSEKDGLTGLWNRRKFEEQLAQYAGIIERYPDSPPACLALFDIDHFKRINDELGHD 519

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GDKVI  +++ L+    +  FV R+GGEEFA     ++ +EA I+ N LR  +   Q+ 
Sbjct: 520 EGDKVICSVAETLLEEVRSTDFVSRVGGEEFAVIMPHTTLEEAEIVLNRLRVAV---QMR 576

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VCFS 259
              G    IT+SAG ++        T  Y+ AD ALY +K +GRN V +C S
Sbjct: 577 SDRG----ITVSAGYSDLTSDR---TRTYKCADIALYESKSAGRNCVSLCHS 621


>gi|327441387|dbj|BAK17752.1| FOG: GGDEF domain [Solibacillus silvestris StLB046]
          Length = 521

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 85/162 (52%), Gaps = 8/162 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           N + + + ID L+ LLN +     I  L    +  ++V  D+D+FK IND  GH VGDKV
Sbjct: 359 NTLEEETSIDSLTNLLNRATLEKRIQLLTEQRKDYTLVMLDVDWFKTINDTHGHIVGDKV 418

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  L+ +L           R GGEEF      ++ +EA      LR  ++  QI   +G 
Sbjct: 419 LQALASKLKESLKENELACRYGGEEFILVFTETTVEEAYERVELLRGNVQ--QIISPAGK 476

Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
              +T SAGIA    H   +  II +AD+ALY AK++GRNRV
Sbjct: 477 P--LTFSAGIANYPLHGVQMKNIIEKADEALYKAKENGRNRV 516


>gi|254457933|ref|ZP_05071360.1| ggdef/pas/pac-domain containing protein [Campylobacterales
           bacterium GD 1]
 gi|207085326|gb|EDZ62611.1| ggdef/pas/pac-domain containing protein [Campylobacterales
           bacterium GD 1]
          Length = 464

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 85/158 (53%), Gaps = 10/158 (6%)

Query: 107 DCLSGLLNHSAFISSLG------SYNEKL--SIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+ L N   F S L         ++K+  S++ FD+D FK IND  GH +GD V+   
Sbjct: 305 DYLTELHNRRYFTSRLEEEVARIKRDKKVTSSLLMFDLDKFKLINDTLGHLMGDVVLKIF 364

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +D L          GR+GGEEFA     ++ +EA +LAN +R+ + N +  I  G SI+ 
Sbjct: 365 ADILKKNLRKSDIAGRIGGEEFAMILPSTNIREAKVLANRIREEVSNKKT-IIDGNSINF 423

Query: 219 TISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRV 255
           T+S G+      +  S   + RAD ALY+AK  GRNRV
Sbjct: 424 TVSIGLTAIASDDANSDSAFARADTALYMAKGKGRNRV 461


>gi|163803659|ref|ZP_02197522.1| GGDEF family protein [Vibrio sp. AND4]
 gi|159172531|gb|EDP57393.1| GGDEF family protein [Vibrio sp. AND4]
          Length = 337

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 86/155 (55%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D LS L N  AF + L      ++ +++V  DID+FK  NDN+GH  GD VI  ++ +L 
Sbjct: 181 DGLSNLYNRRAFDNDLQMLIDNSQSMTLVLLDIDHFKGFNDNYGHLFGDTVIKAIARRLQ 240

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH-ITIS 221
                 +   R GGEEFA      S +     A+ LR+IIE  ++ +  SG  +  IT S
Sbjct: 241 QSCRDGISAYRFGGEEFALIVPNKSIRIGRQYADTLRRIIEKLRVRDKRSGSQVQNITAS 300

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+AE    + + +++ +AD+ LY AK+ GRNRV+
Sbjct: 301 FGVAEYEVGDTLDSLVTKADKQLYEAKQLGRNRVM 335


>gi|317154323|ref|YP_004122371.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
 gi|316944574|gb|ADU63625.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
          Length = 457

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 87/167 (52%), Gaps = 9/167 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +S+ D L+ + N   F+            ++E  +I+  DID+FK IND  GH VGD+V+
Sbjct: 146 VSQQDPLTKVANRRFFMEHATRELTRGKRFHEPQAILIIDIDHFKTINDKHGHDVGDEVL 205

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++             GR+GGEEFAA  L +++  A I+A  +R+ +E   +N+  G  
Sbjct: 206 KAMATACSKALREVDVFGRIGGEEFAAMLLNTNDSVARIVAERVRESVERLSVNV-GGKE 264

Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           I  TIS G+         +   +  AD+ALY AK+SGRNRV    D+
Sbjct: 265 IPFTISIGLVSFLGGSNTLDDRMKMADKALYRAKESGRNRVEVLVDV 311


>gi|254501927|ref|ZP_05114078.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222437998|gb|EEE44677.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 759

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 103/218 (47%), Gaps = 30/218 (13%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           + PF G+   ++   + V+I++T        +  + K L +S  +    SR D LSGL N
Sbjct: 278 INPFLGMAAFMI---TAVVIAVTA------FTRHMTKRLAVSEAQAVHTSRHDALSGLPN 328

Query: 115 HSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
            + F       +    S   + ++++ D+D+FK IND  GH  GD VI  +  +L  V G
Sbjct: 329 RAHFHRLLTDMLQDTNSRGRETAVIYIDLDHFKDINDTLGHSAGDMVIVAVGKRLTHVLG 388

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-----GPSIH--ITI 220
               V R+ G+EFA     S   E       L  I++  Q  IS         +H  ++I
Sbjct: 389 DNGIVARISGDEFAMVIPNSKSDEW------LEYILDQIQDEISQPIKIGARELHASLSI 442

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            A +A R   +P   ++ +AD ALY AK++GRNR   F
Sbjct: 443 GASVAPRDGIDP-DELLRKADIALYDAKENGRNRRSFF 479


>gi|218704961|ref|YP_002412480.1| putative diguanylate cyclase [Escherichia coli UMN026]
 gi|218432058|emb|CAR12946.1| putative diguanylate cyclase [Escherichia coli UMN026]
          Length = 347

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 168 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 221

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 222 DKFKEINDTWGHNTGDEILRKISQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 281

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 282 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 341

Query: 257 CFS 259
            + 
Sbjct: 342 LWK 344


>gi|254474939|ref|ZP_05088325.1| GGDEF domain/pas/pac and gaf sensor domain protein [Ruegeria sp.
           R11]
 gi|214029182|gb|EEB70017.1| GGDEF domain/pas/pac and gaf sensor domain protein [Ruegeria sp.
           R11]
          Length = 496

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 80/164 (48%), Gaps = 8/164 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           + +   S  D L+ L N   F+ +L          N   SI+ FD D FK  NDN GH  
Sbjct: 325 DELHDQSTRDPLTRLFNRRYFLEALRAEHTMAARKNTPFSILSFDADKFKAFNDNHGHDA 384

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  + D++  VF       R GGEEF+    G+ +  AA +A  LR  IE++ I  
Sbjct: 385 GDMVLRAIGDKMQEVFRNGETPCRFGGEEFSVLLPGADQATAANMAEALRLAIEDTSIRY 444

Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
            +     +T+S G A    H E    ++  AD+ALY AK +GRN
Sbjct: 445 GAATLPRVTVSIGTASYPDHGELPQDLLTAADRALYAAKAAGRN 488


>gi|85712181|ref|ZP_01043233.1| cyclic nucleotide phosphodiesterase, putative [Idiomarina baltica
           OS145]
 gi|85693989|gb|EAQ31935.1| cyclic nucleotide phosphodiesterase, putative [Idiomarina baltica
           OS145]
          Length = 303

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 8/163 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++ L+  D L+GL N  AF         L       +I+  DID+FK IND FGH  GDK
Sbjct: 138 LTTLAETDSLTGLYNRRAFFRYVDELIKLRVQTAYFAIILLDIDHFKLINDRFGHEAGDK 197

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +++ +   L  +      V R GGEEF  A  G+S+     +A+ ++ +I +  +N    
Sbjct: 198 LLSAIGKALRSLNNKNSVVARTGGEEFTIAVTGASQDALVAVAHQVQALISDITLNYFDA 257

Query: 214 PSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255
            ++  T S GIA    + P I+ I+  AD ALY AK +GR R 
Sbjct: 258 -TLSCTASVGIATTNTQSPDINQIMRHADHALYRAKAAGRART 299


>gi|317152096|ref|YP_004120144.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942347|gb|ADU61398.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
          Length = 974

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 82/164 (50%), Gaps = 9/164 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+G  N   F       +     Y   L+++  DIDYFK IND  GH  GD
Sbjct: 809 MKRLATTDSLTGAANRHEFFRLAELELRRAMRYGHSLAVLMLDIDYFKSINDTHGHQTGD 868

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  LS  +          GRLGGEEFAA    +      ++A+ LR+ +   ++ +  
Sbjct: 869 AVLKALSALVRTTLRDTDIFGRLGGEEFAAVLPETDLAGGVLVADRLRRELGALKVRLRD 928

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
              +  T+S G+ E R  +  I   I RAD+A+Y AK+ GRNRV
Sbjct: 929 -IEVMFTVSIGLTETRKSERLIDDAINRADEAMYKAKRMGRNRV 971


>gi|157963226|ref|YP_001503260.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157848226|gb|ABV88725.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
          Length = 346

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 8/164 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           L +SYNR++       L+    +     SL   +E+L ++  DID+FKQ+ND +GH  GD
Sbjct: 181 LTLSYNRLA-------LTKYFENVGSKPSLQELDEELHLLILDIDFFKQVNDEYGHEAGD 233

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+   +  +  + G      R+GGEEF        + EA  LA  +R  +      ++ 
Sbjct: 234 TVLQECAKIISRIAGDKQ-TFRIGGEEFCVMIENKKQDEAIALAQLIRTKLAQHTFRLAE 292

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +I+IT+S G++       + +++ +ADQ LY AK +GRN+V+
Sbjct: 293 QDNINITVSIGLSNYQPGMALPSLLRQADQRLYRAKHTGRNQVI 336


>gi|326794482|ref|YP_004312302.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326545246|gb|ADZ90466.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 435

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 67/125 (53%), Gaps = 3/125 (2%)

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND +GH VGD+V+  ++  L    G    + R GGEEFA       EQ A  +   
Sbjct: 302 FKNVNDQYGHQVGDQVLKHVAQSLSETLGDHGILARWGGEEFAVLLPYYDEQRARGMGEI 361

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           LR+ I+ +         IHIT+S G+A     E  + ++ RAD ALY AK+SGRNRV+  
Sbjct: 362 LRQSIDTAYF---EDQQIHITLSVGVARLGDDETGNQLLNRADMALYEAKESGRNRVIVA 418

Query: 259 SDIEN 263
             +E 
Sbjct: 419 KSVEQ 423


>gi|254262169|emb|CAZ90498.1| Uncharacterized protein yneF [Enterobacter turicensis]
          Length = 511

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 105/202 (51%), Gaps = 15/202 (7%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--- 127
           L I +I I  L+  IS + + +L     ++S+ +  D L+G+ + S    +L S +E   
Sbjct: 305 LGIATIAICPLIVSISVAAINKLMA---QVSRRADYDYLTGVYSRSGLHETLKSMDENGN 361

Query: 128 ---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
              ++S++  DIDYFK IND++GH  GD V+A  ++++  + G    V R+GGEEF    
Sbjct: 362 VPQEMSVMLLDIDYFKGINDSYGHECGDLVLAAFANKVNQIVGERGLVARMGGEEFVVFC 421

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-----HKEPISTIIYR 239
             ++ +E   +A ++R  +            + +T+S G+  +      + +    ++ +
Sbjct: 422 PNAAAEEGYQIAEEIRTAVAQHPFEWKKN-RLWLTVSIGLGSQARLWSSYTDAFIQLMPK 480

Query: 240 ADQALYVAKKSGRNRVVCFSDI 261
           AD+ LY++K +GRNR     D+
Sbjct: 481 ADRYLYLSKNAGRNRTSAEPDV 502


>gi|255306089|ref|ZP_05350261.1| putative signaling protein [Clostridium difficile ATCC 43255]
          Length = 572

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 80/153 (52%), Gaps = 10/153 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ + N  +F      Y EK    ++V  DID FK INDN+GH  GD VI  +++ + 
Sbjct: 425 DGLTNVYNRKSFDIMYEKYREKDDNFALVMIDIDNFKLINDNYGHKFGDTVIKGITNTIC 484

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
           V+      V R GGEEF+      S  E A + + +R  I N + N      + +TISAG
Sbjct: 485 VMLEQDDKVFRYGGEEFSVLIRNKSGDEVADIIDSIRVAIANKKWN----DDVTVTISAG 540

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +A   H      ++  AD+ LY AK+ GRN+VV
Sbjct: 541 VA---HVSDSKDVLEEADKNLYKAKQLGRNKVV 570


>gi|152982756|ref|YP_001352256.1| hypothetical protein mma_0566 [Janthinobacterium sp. Marseille]
 gi|151282833|gb|ABR91243.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 421

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 91/189 (48%), Gaps = 25/189 (13%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--------EK 128
           +I LLL Y       E  +  NR   L+  D LS LLN  A +S+ G YN         +
Sbjct: 244 SIGLLLLYF------ERTVEENR--HLATHDELSKLLNRRAIVSA-GEYNLASATRLGHE 294

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+I F DID FK  ND FGH  GD VI  ++  L     T   VGR GGEEF     G +
Sbjct: 295 LTIAFIDIDMFKHFNDKFGHAAGDTVIQEVAAILQQTCRTIDMVGRYGGEEFLIILPGVN 354

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIA--ERCHKEPISTIIYRADQALY 245
              AAI+   L   +   +        IH +TISAG+    +  +   + ++ RAD ALY
Sbjct: 355 RDAAAIVGERLVDAVRQYRFM-----GIHPVTISAGLTTLPKTEQCTWTQLVRRADAALY 409

Query: 246 VAKKSGRNR 254
            AK  GRNR
Sbjct: 410 EAKGLGRNR 418


>gi|152997335|ref|YP_001342170.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150838259|gb|ABR72235.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 556

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 18/176 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQIND 144
           EL  S   +  ++R D L+ + N  A   +L   Y +        +++  D D+FK++ND
Sbjct: 385 ELEASNRSLEAIARKDPLTHIYNRLALDEALHKEYRQAQESKCPFAVIMIDADHFKRVND 444

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +FGH VGD V+  ++  L V  G    V R GGEEF       +  EA  +A  +R+ +E
Sbjct: 445 SFGHTVGDLVLQKIAKLLTVQVGDKGIVARFGGEEFTVLLPNMNADEAKNIAEMIREALE 504

Query: 205 NSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +  +S G  +++T S G+A    +  H E    ++ RAD ALY AK+ GRNRVV
Sbjct: 505 KEE--MSDG--LYVTASFGVAMYEIDDSHYE---QVLNRADAALYKAKEQGRNRVV 553


>gi|46579050|ref|YP_009858.1| response regulator/GGDEF domain-containing protein [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46448463|gb|AAS95117.1| response regulator/GGDEF domain protein [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311232896|gb|ADP85750.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio vulgaris RCH1]
          Length = 437

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 86/179 (48%), Gaps = 13/179 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQIND 144
           +L     R  +L+  D L+GL     F       +       + +++V  D+D+FK++ND
Sbjct: 242 DLLDLMRRNRELAERDELTGLYARRRFFERAADLHRHAARAGDAMAVVMLDVDHFKRVND 301

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD  +  L   L   F  P+  GR GGEEF     G+S Q         R  +E
Sbjct: 302 TYGHVAGDLALRQLGMMLRRAFDEPVVAGRYGGEEFGLVVAGASVQGLPDRLEAFRHDVE 361

Query: 205 NSQINISSGPSI-HITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             ++ +S G  +  ITISAG  +A  C   P  ++  RAD  LY AK+ GRNRVV   D
Sbjct: 362 --RLEVSLGDRMFWITISAGCLLASACGSTP-DSLFARADALLYQAKQQGRNRVVVERD 417


>gi|302386188|ref|YP_003822010.1| diguanylate cyclase [Clostridium saccharolyticum WM1]
 gi|302196816|gb|ADL04387.1| diguanylate cyclase [Clostridium saccharolyticum WM1]
          Length = 482

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 82/152 (53%), Gaps = 8/152 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+  D L+GL N   F+  + +  E+   V  D+D+FK +ND FGH  GD+V+    + L
Sbjct: 336 LATEDALTGLSNRRYFMEKVETRTEQGIFVIIDLDHFKSVNDTFGHVEGDRVLKAFGESL 395

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
              F  P  V R GGEEFA    G + +EA      +R+  + + +N +      +T SA
Sbjct: 396 KETFA-PQTVCRYGGEEFAVFMNGLTMEEAFQQVEAMRE--KTAYMNFAR----KVTFSA 448

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           G+AE C    +S  +  AD+ LY AKK+GRN+
Sbjct: 449 GMAE-CRNCNVSEALIIADRKLYEAKKNGRNQ 479


>gi|260772710|ref|ZP_05881626.1| GGDEF domain protein [Vibrio metschnikovii CIP 69.14]
 gi|260611849|gb|EEX37052.1| GGDEF domain protein [Vibrio metschnikovii CIP 69.14]
          Length = 370

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 85/167 (50%), Gaps = 10/167 (5%)

Query: 100 ISQLSRIDCLSGLLN----HSAF--ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++ L+  D L+G  N    HSAF       S N  L ++  D+DYFKQIND FGH  GDK
Sbjct: 192 LTHLATRDPLTGAHNRLSLHSAFDYFEQNKSPNTSLCLLIIDLDYFKQINDQFGHDTGDK 251

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+           G      R+GGEEF       S  +A  +   LR ++ N   + S  
Sbjct: 252 VLVETCRLFAQHVGEKNLF-RIGGEEFCITLFDHSLLQAEQIGERLRNLVAN--YSFSKQ 308

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV-VCFS 259
            +I +T+S GI E    + ++ +I  AD  LY AKK+GRN+V +C S
Sbjct: 309 QAIQLTLSVGICEYRSGDNLNELIKLADMELYKAKKNGRNQVCICQS 355


>gi|227823386|ref|YP_002827358.1| putative response regulator/GGDEF domain transcriptional regulator
           [Sinorhizobium fredii NGR234]
 gi|227342387|gb|ACP26605.1| putative response regulator/GGDEF domain transcriptional regulator
           [Sinorhizobium fredii NGR234]
          Length = 628

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L +S  ++  L+  D L+G++N  AF        +     N  LS++  D+D FK  ND 
Sbjct: 440 LRLSAEQLKNLAETDGLTGIVNRRAFDEAFMREAARCARGNAPLSLLMIDLDRFKAYNDT 499

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GHP GD+ +  +S  L+     P   V R GGEEF      + E+ AA++A    +++ 
Sbjct: 500 YGHPAGDQCLRLVSKCLLNSAKRPGDIVARYGGEEFVVLLPEADEKAAAVVAEKFARLLG 559

Query: 205 NSQINISSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNRVV 256
              I  +     H+T S GIA         EP   ++  AD ALY AK  GRNR++
Sbjct: 560 EENIVHAQSEFGHVTASIGIASAMGHLLQAEP-GRLLSEADAALYEAKMRGRNRIL 614


>gi|157963083|ref|YP_001503117.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157848083|gb|ABV88582.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
          Length = 381

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 105/215 (48%), Gaps = 28/215 (13%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
            +  ++I  E L L +    ++ +  YI   +    F++Y         D L+GL +  A
Sbjct: 176 LWTAQFIRPETLPLAVSMTALASI--YILTVLTDSYFLAYR--------DELTGLASRRA 225

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
             + + S   K S+   DID+FK+ ND +GH VGD+V+  ++ ++  V G      R GG
Sbjct: 226 LFNLVLSLGRKYSVAMLDIDHFKKFNDTYGHDVGDQVLKLVASKIAGVRGGGRAF-RYGG 284

Query: 178 EEF--------AAAALG-------SSEQEAAILANDLRKIIENSQINISSG--PSIHITI 220
           EEF        +++ L        S E+   +L ++ RK    +    + G   ++ +TI
Sbjct: 285 EEFTIIFPRKDSSSTLDYLEEVRESIEEYDIVLRDEKRKSQSKATRGKTQGKAKTVSVTI 344

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S G+AE  + E     + R+DQALY AKK GRN+V
Sbjct: 345 SIGVAEHQNGETFEQTMKRSDQALYRAKKKGRNQV 379


>gi|120603366|ref|YP_967766.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio vulgaris DP4]
 gi|120563595|gb|ABM29339.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio vulgaris DP4]
          Length = 445

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 86/179 (48%), Gaps = 13/179 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQIND 144
           +L     R  +L+  D L+GL     F       +       + +++V  D+D+FK++ND
Sbjct: 250 DLLDLMRRNRELAERDELTGLYARRRFFERAADLHRHAARAGDAMAVVMLDVDHFKRVND 309

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD  +  L   L   F  P+  GR GGEEF     G+S Q         R  +E
Sbjct: 310 TYGHVAGDLALRQLGMMLRRAFDEPVVAGRYGGEEFGLVVAGASVQGLPDRLEAFRHDVE 369

Query: 205 NSQINISSGPSI-HITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             ++ +S G  +  ITISAG  +A  C   P  ++  RAD  LY AK+ GRNRVV   D
Sbjct: 370 --RLEVSLGDRMFWITISAGCLLASACGSTP-DSLFARADALLYQAKQQGRNRVVVERD 425


>gi|299831222|gb|ADJ55751.1| hypothetical protein [Clostridium sporogenes]
          Length = 562

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 9/172 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  L   D L+ + NH  F  +L          NE LS++F DIDYFK  ND +GH  G
Sbjct: 184 KLESLVNKDGLTNVYNHRFFHDALSKEIIECEEKNEALSMIFIDIDYFKHYNDLYGHQKG 243

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-I 210
           DKV+  + + L         V R GGEEFA     +SE+EA  +A  +R+  E +     
Sbjct: 244 DKVLKTIGEILKNNTREEDIVARYGGEEFAILLPSTSEEEAINIAEKIRRKTEYTYFEGE 303

Query: 211 SSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261
            + P+ ++T+S GI+   +K      +I  AD ALY AK   +NRV  ++ I
Sbjct: 304 ENQPNGNLTVSMGISVYPYKAKSDMELIKSADDALYRAKFFNKNRVEAYTSI 355


>gi|218512873|ref|ZP_03509713.1| putative sensory box/GGDEF family protein [Rhizobium etli 8C-3]
          Length = 194

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 94/170 (55%), Gaps = 10/170 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           S N++++L+  D L+G LN        S+LGS  + +S++  DID+FKQ+ND  GH  GD
Sbjct: 25  SRNQLTELAHHDPLTGALNRGGLAQHASALGS--QPISLLIMDIDHFKQLNDRHGHAAGD 82

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +++   +     +      + R GG+EF A     S ++A  +A  +R  +E + + +  
Sbjct: 83  EILRLFARVSRGIMRPQDLLARQGGDEFLAVLKNLSREDAMAIAERIR--LEFAAV-VMQ 139

Query: 213 GPSIHI--TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            P + +  T+S G+A R       +++++AD+ALY +K+ GRNRV    D
Sbjct: 140 RPDLAVFPTLSIGVATRISGGDFESLMHKADEALYRSKREGRNRVEASWD 189


>gi|163758980|ref|ZP_02166066.1| diguanylate cyclase [Hoeflea phototrophica DFL-43]
 gi|162283384|gb|EDQ33669.1| diguanylate cyclase [Hoeflea phototrophica DFL-43]
          Length = 260

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 106/204 (51%), Gaps = 11/204 (5%)

Query: 58  FYGLEYILVENLSL---VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           F+G  Y+ V  ++    V+I + I+  +  +  ++ +   ++ +++ Q  R D L+G+L 
Sbjct: 40  FFGWPYLGVFAIAFFPAVLIPLLITPPIAILILNLFRVQALTIDKVDQYIRYDTLTGVLT 99

Query: 115 HSAFISSLGSYNEKL----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
            +     LG   + L    + +  D D+FK+IND  GH VGD+ +  +++ L        
Sbjct: 100 RAYL---LGKTRDALPSGGAFMMIDADHFKKINDTHGHDVGDEALRKMAEILRKGVCGEA 156

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            +GRLGGEEF     G++E EAA  AN L  ++      +  G  I +T+S G A     
Sbjct: 157 LIGRLGGEEFGVFLPGATESEAAAAANRLCDLVREEG-RVIGGNDIALTVSIGCAVHRDG 215

Query: 231 EPISTIIYRADQALYVAKKSGRNR 254
             + + +  AD+ALY AK+SGR+R
Sbjct: 216 NSLESTVKLADEALYQAKRSGRDR 239


>gi|51246553|ref|YP_066437.1| hypothetical protein DP2701 [Desulfotalea psychrophila LSv54]
 gi|50877590|emb|CAG37430.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 390

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 85/168 (50%), Gaps = 15/168 (8%)

Query: 102 QLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +LS  D L+GLLN  A           S    Y+  +S++ FDIDYFKQ ND +GH  GD
Sbjct: 223 RLSLTDSLTGLLNRRAIEPLAERAMARSRRSGYS--VSLLIFDIDYFKQFNDQYGHVAGD 280

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+A  + ++         + R GGEEF   A  +   +A  LAN +R+++         
Sbjct: 281 RVLAAAAKEVGNSIRITDSIVRWGGEEFVVLATDTDLVQAVQLANKIRQVVAAISFEDMG 340

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           G    IT+S G+A+   K      +  AD+ALY AK  GRN  V +SD
Sbjct: 341 G----ITVSVGLAQYNGKGDFRQWLKCADRALYQAKGRGRNCTVAYSD 384


>gi|313683550|ref|YP_004061288.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM
           16994]
 gi|313156410|gb|ADR35088.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM
           16994]
          Length = 854

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 95/184 (51%), Gaps = 14/184 (7%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIV 132
           ++GY+S G  +    +    I +++ ID L+G+ N   F        E+       LS++
Sbjct: 672 IIGYVSTGKDVTLETLMNQEIQRIATIDQLTGIYNRHKFEELFILETERSRRFLQPLSLI 731

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK +ND +GH VGD+V+  L+D +           R GGEEF   +  +  +  
Sbjct: 732 LIDIDHFKVVNDTYGHDVGDEVLKTLADVIGENIRKIDIFARWGGEEFLVLSPNTDLKNV 791

Query: 193 AILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
             LA  LR  +EN+       P++ H+TIS GI+    ++  +T+  R DQ LY AK+ G
Sbjct: 792 QKLAEKLRSAVENAFF-----PTVHHVTISLGISTFREEDTFTTLFKRIDQGLYYAKEHG 846

Query: 252 RNRV 255
           RN++
Sbjct: 847 RNQI 850


>gi|304393867|ref|ZP_07375792.1| diguanylate cyclase [Ahrensia sp. R2A130]
 gi|303294066|gb|EFL88441.1| diguanylate cyclase [Ahrensia sp. R2A130]
          Length = 266

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 126/272 (46%), Gaps = 36/272 (13%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           ++ WL       SF      +  +I   + +A  + +     ++    P +  E+     
Sbjct: 5   MTDWLARASRHNSFG-----VAAAITLVLILAAEVVVTQTLGYF---DPHHMEEH----G 52

Query: 69  LSLVIISITISLLLGYISGSIL----KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
            ++V+ +   + LL + +  IL    + +     +++Q  + D L+G ++ +AF+ +   
Sbjct: 53  FAVVLATGGTTALLAFPTLIILMKMTRRIDAMRRQLAQAVQTDFLTGTMSRAAFMETFER 112

Query: 125 YNEKL--------------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
              K               +++  D D+FK IND FGH +GD V+  +   L        
Sbjct: 113 RQSKARERRTEGYNVNCRDALLVVDADHFKSINDRFGHSIGDAVLTMMGRVLHTSVRPGD 172

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS--QINISSGPSIHITISAGIAERC 228
            VGRLGGEEF    +G SEQ+A   A  LR  I +S   +NI  G S+ ++I A + E  
Sbjct: 173 HVGRLGGEEFGVYLIGCSEQDALDAAERLRAAIADSGRHLNI-EGLSVTVSIGAVMFEPA 231

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +   + +  +AD+ LY AK +GRN+V+ F D
Sbjct: 232 CE--FARVFEKADENLYAAKDAGRNKVI-FDD 260


>gi|157376608|ref|YP_001475208.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157318982|gb|ABV38080.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 298

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 114/258 (44%), Gaps = 47/258 (18%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL 80
            FSP    + FS  F + +  + F   IF+F                    V+ S+++  
Sbjct: 62  KFSP----VQFSQLFDLVVPIIFFGGAIFVF--------------------VVCSLSLRT 97

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVF 133
               +    LK+  I+          D L G+ N       L        +Y++ LSI  
Sbjct: 98  TRDIMQNYALKQENIT----------DSLMGIFNRRYLDRRLKDETERALNYSQPLSIFL 147

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FKQ+NDN+GH VGD V+  ++  +         + R GGEEF      + +  + 
Sbjct: 148 IDIDHFKQVNDNYGHQVGDLVLKNIAQLIKHSLRESDVLARFGGEEFVVILPRTKDSTSY 207

Query: 194 ILANDLRKIIENSQINISSGP-----SIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247
            LA  LR ++E+ Q+ +         SI +T+S G+A      +    +I  AD+ALY A
Sbjct: 208 TLAERLRHVVEDFQLTLPEESDKDSLSISVTVSIGVAGLNAQCKDCQCLIENADRALYQA 267

Query: 248 KKSGRNRVVCFSDIENNT 265
           K++GRN+V+     + +T
Sbjct: 268 KRNGRNQVITSKSGKTDT 285


>gi|71281176|ref|YP_270943.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71146916|gb|AAZ27389.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 334

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 9/165 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
            I+Q+SRID L+ + N   +  SL         +++KLS++  D+D+FK +NDN+GH  G
Sbjct: 163 EIAQISRIDGLTQVYNRRHWQDSLEQEYAKARRHDKKLSLIMLDLDHFKLLNDNYGHQGG 222

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  +S  +  +       GR GGEEFA     +    A  LA  + +II  +    +
Sbjct: 223 DMVLIEVSALISTLLRVEDTFGRYGGEEFAIILPETDSAGAIELAQRICRIIATTPFTYN 282

Query: 212 SGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255
               I +T+S G+A+   KE     +I +AD ALY AK  GRN+V
Sbjct: 283 DQ-VIKVTVSLGVAQLSSKESNYEELITQADSALYQAKSQGRNQV 326


>gi|309782241|ref|ZP_07676970.1| sensory box/GGDEF domain protein [Ralstonia sp. 5_7_47FAA]
 gi|308919012|gb|EFP64680.1| sensory box/GGDEF domain protein [Ralstonia sp. 5_7_47FAA]
          Length = 416

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 93/179 (51%), Gaps = 16/179 (8%)

Query: 88  SILKELFISYNRISQLSRI---DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDID 137
           S+ K++     R   L R    D L+GL N        +    +  +    L++   DID
Sbjct: 239 SVSKDITKRVERERALLRAATKDKLTGLHNRHHGEQLLAERYRTARTLQRPLTLAMCDID 298

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK+IND FGHP GD+V+A ++D L     +   V R GGEEF       S+ +A  LA 
Sbjct: 299 HFKRINDEFGHPTGDRVLAEVADMLRQAVRSRDAVIRWGGEEFMIVLNECSQTDAVDLA- 357

Query: 198 DLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             ++I++  ++N      I  +T+S G+A     E I  +I RAD ALY AK++GRNR+
Sbjct: 358 --KRILD--RVNAYEDEEIPTLTLSLGLATLAPNEAIDELIARADSALYEAKRTGRNRL 412


>gi|300716694|ref|YP_003741497.1| conserved uncharacterized protein [Erwinia billingiae Eb661]
 gi|299062530|emb|CAX59647.1| conserved uncharacterized protein [Erwinia billingiae Eb661]
          Length = 378

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 95/184 (51%), Gaps = 11/184 (5%)

Query: 80  LLLGYISGSILK----ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIV 132
           +L G+ + + L+    +L IS  R+  L+  D L+G  N  A    L    S      ++
Sbjct: 194 MLQGWFNEAWLRFQENQLLIS--RLDTLAHQDVLTGTANRRALEDHLHNAVSRQASFELI 251

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
             D+DYFK+ ND++GH  GD  +A ++  L   V  +   V R GGEEF     G++ Q 
Sbjct: 252 MLDVDYFKRYNDHYGHQAGDVCLAEVAAVLKTAVRTSEDLVARYGGEEFVVMLFGATPQG 311

Query: 192 AAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           A  +A  ++  ++ + + +  S  S  +T+S GIA     + ++ I+  AD ALY AK+ 
Sbjct: 312 AEQIAERIQANLQQAHLRHERSDVSDTVTVSMGIASSDGSKGVAQILAEADAALYRAKEQ 371

Query: 251 GRNR 254
           GRNR
Sbjct: 372 GRNR 375


>gi|89108333|ref|AP_002113.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           W3110]
 gi|254161548|ref|YP_003044656.1| putative diguanylate cyclase [Escherichia coli B str. REL606]
 gi|85674988|dbj|BAA15155.2| predicted diguanylate cyclase [Escherichia coli str. K12 substr.
           W3110]
 gi|253973449|gb|ACT39120.1| predicted diguanylate cyclase [Escherichia coli B str. REL606]
 gi|253977660|gb|ACT43330.1| predicted diguanylate cyclase [Escherichia coli BL21(DE3)]
          Length = 347

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 168 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 221

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 222 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 281

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 282 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 341

Query: 257 CFS 259
            + 
Sbjct: 342 LWK 344


>gi|114563939|ref|YP_751453.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114335232|gb|ABI72614.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 530

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 81/163 (49%), Gaps = 8/163 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +L+ +D L+ L N +A    +         +   L I   DID+FK INDNFGH  GDK
Sbjct: 366 QKLNLLDPLTQLANRTALEDRMEQEYRNHVRFKTPLWIAITDIDHFKNINDNFGHSTGDK 425

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  ++  L        FV R GGEEF       +++  + L N +R+ I+N      + 
Sbjct: 426 TLQVIAMALKNSLRDSEFVARYGGEEFVLLLPDVTDEHISQLLNRVREKIKNIPFKFKNQ 485

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I +T+S G A+    E +     RAD ALY AK +GR+RVV
Sbjct: 486 -RITVTLSIGAAQVMENETLEEAFERADAALYQAKNNGRDRVV 527


>gi|300922702|ref|ZP_07138795.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|301325063|ref|ZP_07218603.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|309796150|ref|ZP_07690561.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
 gi|300420952|gb|EFK04263.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|300848039|gb|EFK75799.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|308120211|gb|EFO57473.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
 gi|320201772|gb|EFW76348.1| Putative Heme-regulated two-component response regulator
           [Escherichia coli EC4100B]
          Length = 460

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454

Query: 257 CFS 259
            + 
Sbjct: 455 LWK 457


>gi|229492970|ref|ZP_04386765.1| diguanylate cyclase [Rhodococcus erythropolis SK121]
 gi|229320000|gb|EEN85826.1| diguanylate cyclase [Rhodococcus erythropolis SK121]
          Length = 489

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 105/204 (51%), Gaps = 15/204 (7%)

Query: 72  VIISITISLL-LGYISGSILKELFISYNRISQLS-RIDCLSGLLNHSAFI-------SSL 122
           VI SI ++L+ LG I+ +   E   +  R   L+   D L+G+L+  AF+       +  
Sbjct: 254 VITSIAVTLIALGPIAVACATEERRAAERELFLAVEFDHLTGVLSRGAFLGHAEAELADA 313

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                 + ++  D+D+FK IND  GH  GD V+A  +++          +GRLGGEEFA 
Sbjct: 314 ARTQSPVGLLMLDLDHFKSINDTHGHMTGDSVLANFAERAADRLSDGDLIGRLGGEEFAV 373

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRAD 241
                S   A     D+ + +  +Q+  S+   +  T+S G+A   H  P +ST++  AD
Sbjct: 374 LLPDCSFTRAI----DVAEAVRGAQVEYSAESDVTSTVSVGVAWVDHATPALSTLMSVAD 429

Query: 242 QALYVAKKSGRNRVVCFSDIENNT 265
           +ALY AK++GRN +V    + N+T
Sbjct: 430 EALYDAKRAGRN-LVKVHRVGNDT 452


>gi|152994229|ref|YP_001339064.1| PAS/PAC sensor-containing diguanylate cyclase [Marinomonas sp.
           MWYL1]
 gi|150835153|gb|ABR69129.1| diguanylate cyclase with PAS/PAC sensor [Marinomonas sp. MWYL1]
          Length = 469

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 91/177 (51%), Gaps = 8/177 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEK---LSIVFFDIDYF 139
            SI  E F +   + + +  D L+ L N   F       L    EK   L+I+  D+D+F
Sbjct: 282 ASIAIESFRAQEALQKRAYFDHLTELANRGYFFQQCETLLNLSREKNFPLAILMMDVDHF 341

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND FGH  GD V+  L+   + +      + R+GGEEFA     + + EA  +A  L
Sbjct: 342 KKVNDEFGHKTGDLVLQMLAQMSLSILRRDDLIARIGGEEFAILLPFTEKDEALRIAEQL 401

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
           R+ IE+S +       +  T+S G+A R   +  +  I+ +AD+ALY AK +GRN V
Sbjct: 402 RESIESSMVLSLDHQEVVFTVSLGVACRQDGDCTVDDILNKADKALYQAKAAGRNCV 458


>gi|163849321|ref|YP_001637365.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222527315|ref|YP_002571786.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus sp. Y-400-fl]
 gi|163670610|gb|ABY36976.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222451194|gb|ACM55460.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus sp. Y-400-fl]
          Length = 722

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 80/158 (50%), Gaps = 8/158 (5%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLNH A    L           + LSI   DID+FK++ND++GH +GD+V+   +
Sbjct: 417 DSLTGLLNHQAVEEELSHEFARAERLQQPLSIAIIDIDHFKRVNDSYGHLIGDQVLRSFA 476

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         +GR GGEEF  A   +S  EA  L + +R      +    +G    +T
Sbjct: 477 RLLQQRLRKSDLIGRHGGEEFLVALPNTSLVEARTLIDTIRTSFAALRHYGPAG-EFTVT 535

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            SAGIA   H      ++  AD ALY AK +GRNR+V 
Sbjct: 536 FSAGIAGYPHHRSQLGVMQAADAALYQAKHAGRNRIVV 573


>gi|326794215|ref|YP_004312035.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326544979|gb|ADZ90199.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 384

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 112/207 (54%), Gaps = 19/207 (9%)

Query: 61  LEYILVENLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           LE  L + L+L++  + IS++L   +   +L   F     ++  +++D L+GL N    +
Sbjct: 167 LEKRLTKGLTLLVWGLFISIMLVIAVLVYVLTRSFKQQVLLAAQNQLDELTGLYNRRYLM 226

Query: 120 SSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
              GS     +  + +   D+D FK +ND +GHPVGD+V+  +++ L       + V RL
Sbjct: 227 KEAGSALIESDSSIGLAIIDLDMFKVVNDKYGHPVGDRVLKHVAEILSSTMQDGI-VARL 285

Query: 176 GGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           GGEEF     +L S +Q       ++R IIE + I +     + +TIS G    C+++P 
Sbjct: 286 GGEEFCLFFTSLCSEKQIEK--CEEIRSIIERAVIEVDD-LKLKVTISIGF---CYRKPN 339

Query: 234 STIIY-----RADQALYVAKKSGRNRV 255
             +++     +AD+ALY+AK++GRN+V
Sbjct: 340 ERVVFSQLYNQADRALYLAKQNGRNQV 366


>gi|157376703|ref|YP_001475303.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157319077|gb|ABV38175.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 610

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 96/199 (48%), Gaps = 18/199 (9%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS---SLGSY 125
           ++L+I  IT+    GY S       +++  R+ QL+  D L+G+ N   F     S   Y
Sbjct: 392 IALLIAIITLLSFWGYKS-------WMTQKRLKQLAEFDALTGVFNRGHFTQLAQSALQY 444

Query: 126 NEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
            E     LS + FD+D FK IND++GH  GD V+  ++D   V   +     RLGGEEF 
Sbjct: 445 CENSDIYLSCILFDLDKFKTINDSYGHACGDWVLKRVADVCKVQGRSNDIFARLGGEEFC 504

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAE-RCHKEPISTIIYR 239
               G     A  LA   RK I  +Q++ S SG    IT S G+ + +     +  I   
Sbjct: 505 ILLPGCDLLTATRLAETCRKAI--AQLDTSDSGAEFIITASFGVTDAKLSGYDLEKITAD 562

Query: 240 ADQALYVAKKSGRNRVVCF 258
           AD A+Y +K  GRNR   F
Sbjct: 563 ADMAMYQSKHDGRNRTTVF 581


>gi|226940043|ref|YP_002795116.1| hypothetical protein LHK_01115 [Laribacter hongkongensis HLHK9]
 gi|226714969|gb|ACO74107.1| GGDEF domain protein [Laribacter hongkongensis HLHK9]
          Length = 585

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 88/180 (48%), Gaps = 11/180 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDI 136
           Y +  ++ EL  S   + +LS  D L+GL N        +  IS    + ++ S++  D+
Sbjct: 408 YFNNVLINELVSSNRELEKLSSTDRLTGLANRLRLDEEVARQISLAQRHAQEFSLILLDL 467

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK +ND  GH VGD+V+  ++  L          GR GGEEF      +S + A  +A
Sbjct: 468 DHFKLVNDQHGHQVGDRVLIEIAALLRQTLRNSDTAGRWGGEEFLIVLPQTSVESARKVA 527

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + LR+ I       S GP    T S GIA     +   T+  R D A+Y +K+ GRNRV 
Sbjct: 528 DKLRRTIAGHNFG-SVGPQ---TASFGIAVWHTGDTAKTLFVRVDHAMYQSKRDGRNRVT 583


>gi|193064262|ref|ZP_03045345.1| diguanylate cyclase [Escherichia coli E22]
 gi|194426074|ref|ZP_03058630.1| diguanylate cyclase [Escherichia coli B171]
 gi|209918771|ref|YP_002292855.1| hypothetical protein ECSE_1580 [Escherichia coli SE11]
 gi|218554022|ref|YP_002386935.1| putative diguanylate cyclase [Escherichia coli IAI1]
 gi|218695027|ref|YP_002402694.1| putative diguanylate cyclase YddV [Escherichia coli 55989]
 gi|293445892|ref|ZP_06662314.1| diguanylate cyclase yddV [Escherichia coli B088]
 gi|300824488|ref|ZP_07104600.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
 gi|331667885|ref|ZP_08368742.1| diguanylate cyclase YddV (DGC) [Escherichia coli TA271]
 gi|331677370|ref|ZP_08378045.1| diguanylate cyclase YddV (DGC) [Escherichia coli H591]
 gi|192929110|gb|EDV82721.1| diguanylate cyclase [Escherichia coli E22]
 gi|194416129|gb|EDX32395.1| diguanylate cyclase [Escherichia coli B171]
 gi|209912030|dbj|BAG77104.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218351759|emb|CAU97475.1| putative diguanylate cyclase YddV [Escherichia coli 55989]
 gi|218360790|emb|CAQ98357.1| putative diguanylate cyclase YddV [Escherichia coli IAI1]
 gi|291322722|gb|EFE62150.1| diguanylate cyclase yddV [Escherichia coli B088]
 gi|300523043|gb|EFK44112.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
 gi|323947806|gb|EGB43803.1| GGDEF domain-containing protein [Escherichia coli H120]
 gi|324021084|gb|EGB90303.1| diguanylate cyclase domain protein [Escherichia coli MS 117-3]
 gi|331064849|gb|EGI36751.1| diguanylate cyclase YddV (DGC) [Escherichia coli TA271]
 gi|331073830|gb|EGI45150.1| diguanylate cyclase YddV (DGC) [Escherichia coli H591]
          Length = 460

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454

Query: 257 CFS 259
            + 
Sbjct: 455 LWK 457


>gi|170736921|ref|YP_001778181.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia cenocepacia
           MC0-3]
 gi|169819109|gb|ACA93691.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia cenocepacia
           MC0-3]
          Length = 313

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 95/182 (52%), Gaps = 13/182 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           + +E   +  ++ + +  D L+G+ N   F + LG        Y   LS++ FD+D+FK 
Sbjct: 135 MQREREEAVAKLREHANRDGLTGIANRRFFEARLGDEFARWQRYGGDLSVLLFDLDHFKT 194

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH  GD V+   + ++  +       GR GGEEFA     ++  EA  +A+ +R+
Sbjct: 195 INDRFGHAAGDAVLRETARRVASIVRAQDTFGRFGGEEFALLLPCTNLDEAMRVADKVRE 254

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCF 258
            I +  ++ + G S+ +T S G    C K    T   ++  AD ALY AK+ GR+R + +
Sbjct: 255 AIGSMPVD-AEGVSVPVTASVGGT--CAKPGALTCDVLVNEADAALYRAKRLGRDRSIAY 311

Query: 259 SD 260
           +D
Sbjct: 312 AD 313


>gi|309701753|emb|CBJ01064.1| putative diguanylate cyclase [Escherichia coli ETEC H10407]
          Length = 347

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 168 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 221

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 222 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 281

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 282 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 341

Query: 257 CFS 259
            + 
Sbjct: 342 LWK 344


>gi|254459366|ref|ZP_05072787.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207083979|gb|EDZ61270.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 666

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 78/131 (59%), Gaps = 4/131 (3%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           Y++  SI+  DID+FK++ND +GH VGD+V+  +S  +  +  +   +GR GGEEF   +
Sbjct: 538 YDKIYSIILIDIDFFKKVNDTYGHQVGDEVLQKVSFIMKELIRSTDILGRWGGEEFMIIS 597

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +    A  L  ++R  IEN+  +  +     +TISAGIA+        +II +AD+AL
Sbjct: 598 PNTDLNGAYTLTQNIRSNIENTIFDSVN----KVTISAGIAQINSNLDEKSIITKADEAL 653

Query: 245 YVAKKSGRNRV 255
           Y AK +GRNRV
Sbjct: 654 YRAKDNGRNRV 664


>gi|126666596|ref|ZP_01737574.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter sp. ELB17]
 gi|126628984|gb|EAZ99603.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter sp. ELB17]
          Length = 460

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 85/157 (54%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N  ++   L         Y   ++I   DID+FK+IND+FGH  GD+V+  L+
Sbjct: 301 DMLTQLPNRDSWQDRLQFEVDRWQRYKGDITIAVVDIDFFKRINDSFGHKAGDRVLQLLA 360

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +L     +  F+ R+GGEEF      ++  +A  + + LR  +     + S+ P + IT
Sbjct: 361 RELKKGLRSTDFIARIGGEEFVVLLPETTGAQAKKVMDGLRDNVAKLPFHFSNQP-VTIT 419

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            SAG+A   + +   T+  RAD+ LY AK +GRN+V+
Sbjct: 420 FSAGLASIRNGDNEDTLFERADRTLYKAKNAGRNQVM 456


>gi|194436632|ref|ZP_03068733.1| diguanylate cyclase [Escherichia coli 101-1]
 gi|253773539|ref|YP_003036370.1| diguanylate cyclase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|260855209|ref|YP_003229100.1| putative diguanylate cyclase [Escherichia coli O26:H11 str. 11368]
 gi|260867930|ref|YP_003234332.1| putative diguanylate cyclase [Escherichia coli O111:H- str. 11128]
 gi|300929571|ref|ZP_07145035.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
 gi|166227580|sp|Q320T0|YDDV_SHIBS RecName: Full=Diguanylate cyclase yddV; Short=DGC
 gi|194424664|gb|EDX40650.1| diguanylate cyclase [Escherichia coli 101-1]
 gi|253324583|gb|ACT29185.1| diguanylate cyclase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|257753858|dbj|BAI25360.1| predicted diguanylate cyclase [Escherichia coli O26:H11 str. 11368]
 gi|257764286|dbj|BAI35781.1| predicted diguanylate cyclase [Escherichia coli O111:H- str. 11128]
 gi|300462486|gb|EFK25979.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
 gi|313848636|emb|CAQ31978.2| diguanylate cyclase, subunit of DosC-DosP complex [Escherichia coli
           BL21(DE3)]
 gi|323962340|gb|EGB57928.1| GGDEF domain-containing protein [Escherichia coli H489]
 gi|323973669|gb|EGB68845.1| GGDEF domain-containing protein [Escherichia coli TA007]
 gi|324119398|gb|EGC13284.1| GGDEF domain-containing protein [Escherichia coli E1167]
          Length = 460

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454

Query: 257 CFS 259
            + 
Sbjct: 455 LWK 457


>gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [Janthinobacterium sp. Marseille]
 gi|151282177|gb|ABR90587.1| Hypothetical protein mma_3133 [Janthinobacterium sp. Marseille]
          Length = 352

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 94/181 (51%), Gaps = 13/181 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHS----AFISSLGSYNEK---LSIVFFDIDYFKQIND 144
           E  I+  R+  +   D L+G+ N        +  +G        LS ++ D+D+FK++ND
Sbjct: 172 ENVINNERLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGYALSGMYIDLDHFKKVND 231

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           NFGH  GD+V+  +++++         +GR GGEEF    + +    A ++A  +R  + 
Sbjct: 232 NFGHQGGDEVLCEVANRIKAELRLSDALGRFGGEEFVVLLIDAPLDAALVVAERIRASVS 291

Query: 205 NSQINISSGPSIHITISAGI-----AERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCF 258
              I +SSG  +  T+S G+     A+R     ++  ++ +AD ALY AKK GRN+V+  
Sbjct: 292 ERPIVLSSGEELRATVSIGVASLNTADRQDSAAVAQQLLAKADLALYQAKKEGRNKVISA 351

Query: 259 S 259
           S
Sbjct: 352 S 352


>gi|148256093|ref|YP_001240678.1| response regulator PleD [Bradyrhizobium sp. BTAi1]
 gi|146408266|gb|ABQ36772.1| response regulator receiver modulated diguanylate cyclase
           [Bradyrhizobium sp. BTAi1]
          Length = 466

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 79/164 (48%), Gaps = 9/164 (5%)

Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N        +       S  + L+++  DIDYFK IND +GH  GD V+   +
Sbjct: 289 DALTGLHNRRYMETHLATLADQAASRGKPLALMMLDIDYFKAINDTYGHDAGDDVLREFA 348

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
            ++           R GGEEF      +    A ++A  LR+ + N    +  G   I +
Sbjct: 349 MRVRKSIRGIDLACRYGGEEFVIVMPETDLHVAGMVAERLRRSVANEPFAVHKGEKRIEV 408

Query: 219 TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           T S GI+    K EPI+ ++ RAD ALY AK  GRNR V  + +
Sbjct: 409 TTSIGISTLEQKGEPIADVMKRADTALYRAKNDGRNRAVAIAPV 452


>gi|134093755|ref|YP_001098830.1| putative signaling protein [Herminiimonas arsenicoxydans]
 gi|133737658|emb|CAL60703.1| conserved hypothetical protein; putative GGDEF domain
           [Herminiimonas arsenicoxydans]
          Length = 258

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 79/154 (51%), Gaps = 4/154 (2%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +R D L+G+LN  A       Y  +  LS++  DID+FK+IND FGHP GD V+  L  +
Sbjct: 81  ARHDNLTGVLNRGAVFDQAEHYLKSNPLSLIVLDIDFFKRINDEFGHPTGDAVLRELVKK 140

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L         +GR+GGEEF       S  +A  +A ++R  I  +    +  P  H+T S
Sbjct: 141 LKSSLNGVGEIGRVGGEEFTVLLPNISLDDAIEIAENVRLAI--AAETFTCFPRPHVTAS 198

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            GI+             RAD ALY AK +GRNRV
Sbjct: 199 FGISWSDTNCDFENAYGRADAALYKAKHNGRNRV 232


>gi|78485406|ref|YP_391331.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78363692|gb|ABB41657.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2]
          Length = 566

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 87/160 (54%), Gaps = 10/160 (6%)

Query: 107 DCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+ + N  AF          S   Y  KL  +  DID+FK+IND+FGH VGD V+  +
Sbjct: 405 DALTNVANRRAFNHFCEHLAFDSQNFYQGKLVALMLDIDFFKEINDSFGHSVGDIVLQKV 464

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L     +   + R+GGEEF    L +  ++A  +A  +R  IE  + +     +I I
Sbjct: 465 ASLLRNNTKSADKIFRMGGEEFLVLLLDTELEDAQKVAERIRAAIEEMETH-KENKTISI 523

Query: 219 TISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           T+S G+A+   ++  + + I  AD+ALY AK+SGRN+VV 
Sbjct: 524 TVSIGMADFLPEDVSLLSTIQLADKALYEAKRSGRNKVVL 563


>gi|46578832|ref|YP_009640.1| GGDEF domain-containing protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603561|ref|YP_967961.1| diguanylate cyclase [Desulfovibrio vulgaris DP4]
 gi|46448244|gb|AAS94899.1| GGDEF domain protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|120563790|gb|ABM29534.1| diguanylate cyclase [Desulfovibrio vulgaris DP4]
 gi|311232695|gb|ADP85549.1| diguanylate cyclase [Desulfovibrio vulgaris RCH1]
          Length = 372

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 88/174 (50%), Gaps = 10/174 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           + L    ++++  +R D L+GL N  +         ++       LS++  DID+FK IN
Sbjct: 183 RRLLALTHQLAFCARSDPLTGLANRRSLCERFEQERQRSLRNNTPLSLILCDIDHFKTIN 242

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD V+  L+D L         V R GGEEF      + E+ A  LA  LR + 
Sbjct: 243 DTHGHECGDYVLRKLADMLRTNMRAQDTVCRWGGEEFLLLLPDTDEKGATRLAEKLRTLT 302

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTI-IYRADQALYVAKKSGRNRVV 256
           E+   +    P I +T+  G+  +C +E  +   I +AD+ LY+AK+ GRNRVV
Sbjct: 303 ESYPFSYHGIP-IRVTLCFGV-HQCSREGHTDYHIRKADRKLYMAKEQGRNRVV 354


>gi|218886632|ref|YP_002435953.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757586|gb|ACL08485.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 381

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 110/243 (45%), Gaps = 13/243 (5%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           P   M+ F +   I +   + +    + ++   PF   +Y     +  ++  +   +  G
Sbjct: 120 PPVVMLTFGLSIGILLMGALLLGVGAILFLPGDPFLYADYSQAFRIRYMLALLCCGIFAG 179

Query: 84  ---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--------KLSIV 132
              Y      + L +   ++++ +R D L+GL N  A    L  Y +         LSI 
Sbjct: 180 LAEYTRRHTQRLLILLTQQLAESARTDELTGLANRRALCERL-EYEQVRARRTGRPLSIA 238

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK +ND +GH  GD V+  ++  L         + R GGEEF      + E  A
Sbjct: 239 ICDIDHFKSVNDCYGHQCGDLVLQSVAGLLHDNLRHQDTICRWGGEEFLLLLPETDEAGA 298

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           A LA  LR ++E  + +    P + +T+S G+     +  I   I +ADQ LY+AK+ GR
Sbjct: 299 ARLAEKLRSLVEAMEYSYHGIP-VSVTLSFGVHTCGPEGDIDYHIRKADQKLYLAKEQGR 357

Query: 253 NRV 255
           NRV
Sbjct: 358 NRV 360


>gi|218700119|ref|YP_002407748.1| putative diguanylate cyclase YddV [Escherichia coli IAI39]
 gi|293409835|ref|ZP_06653411.1| conserved hypothetical protein [Escherichia coli B354]
 gi|218370105|emb|CAR17886.1| putative diguanylate cyclase YddV [Escherichia coli IAI39]
 gi|284921376|emb|CBG34444.1| putative signal transduction protein [Escherichia coli 042]
 gi|291470303|gb|EFF12787.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 460

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454

Query: 257 CFS 259
            + 
Sbjct: 455 LWK 457


>gi|239617314|ref|YP_002940636.1| diguanylate cyclase with PAS/PAC sensor [Kosmotoga olearia TBF
           19.5.1]
 gi|239506145|gb|ACR79632.1| diguanylate cyclase with PAS/PAC sensor [Kosmotoga olearia TBF
           19.5.1]
          Length = 303

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 8/164 (4%)

Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+ L N          F++    +  +  ++F DID+FK  ND +GH  GD
Sbjct: 139 LEKLAMFDELTKLPNRRYVEERLEDFMNDFMRHKLRFGVIFMDIDHFKSFNDTYGHVAGD 198

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KV+  +++ L+        VGR GGEEF A     + +    +A   R ++E+S   + +
Sbjct: 199 KVLKIVANTLLGASRVSDVVGRWGGEEFVALIKNVNMKTIETIAERYRLLVESSSFEL-N 257

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G S+ +TIS G       +   +II RAD+ +Y++K+ GRNR+ 
Sbjct: 258 GESLSVTISIGATLAKQGDTKESIIKRADELMYISKQRGRNRLT 301


>gi|169830872|ref|YP_001716854.1| diguanylate cyclase [Candidatus Desulforudis audaxviator MP104C]
 gi|169637716|gb|ACA59222.1| diguanylate cyclase [Candidatus Desulforudis audaxviator MP104C]
          Length = 471

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 12/164 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +R+ + +  D L+G  N  A        +     Y   LS++F DID FK  ND FGH  
Sbjct: 307 HRLEREAETDFLTGFFNKRALRNLLIVELERTTRYGTPLSVIFLDIDDFKTYNDTFGHVA 366

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+   ++ +          GR GGEEF     G+ E+ A  +A  ++K IE      
Sbjct: 367 GDVVLQKTAEIIRNSIRLVDIAGRYGGEEFVIILPGTKEEGAVAVAERIQKSIEAFPF-- 424

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
              P   +T S GIA   + + + +++ RADQA Y AK+ G+NR
Sbjct: 425 ---PRRQVTTSLGIALAKNNDSVDSLLERADQACYQAKRQGKNR 465


>gi|83745561|ref|ZP_00942619.1| Hypothetical Protein RRSL_04620 [Ralstonia solanacearum UW551]
 gi|207738908|ref|YP_002257301.1| hypothetical protein ggdef [Ralstonia solanacearum IPO1609]
 gi|83727638|gb|EAP74758.1| Hypothetical Protein RRSL_04620 [Ralstonia solanacearum UW551]
 gi|206592279|emb|CAQ59185.1| hypothetical protein ggdef [Ralstonia solanacearum IPO1609]
          Length = 467

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 8/176 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           L+EL  +++++  L+  D L+GL N   FI  + +            S++  D+D FK I
Sbjct: 291 LRELQAAHHKLEHLAATDPLTGLANRREFIGRVEAEIANANHAGAPFSVLALDLDRFKAI 350

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD V+   + + +        V R+GGEEF           A  +A  +R  
Sbjct: 351 NDTYGHQAGDHVLQRFAKKCLEAIRPHDGVARVGGEEFMVLLPKIPLSAAHDIAERIRTA 410

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           I  S   +  G ++ +T+S G++E       I  I+  AD+ LY AK  GRNRV+ 
Sbjct: 411 IAASPFELGPGHAVPLTVSIGVSEFGRDGSDIDAILRSADERLYRAKHEGRNRVIA 466


>gi|75762223|ref|ZP_00742115.1| GGDEF family protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74490290|gb|EAO53614.1| GGDEF family protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 352

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 103/204 (50%), Gaps = 18/204 (8%)

Query: 65  LVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHSAF 118
           L++++++V + +  S++ GYI+      +L+  ELF     + Q + +D L+GL N   F
Sbjct: 150 LIKDINIVGLYLISSIITGYITFISANYVLQSNELF---QTMKQYATVDALTGLGNVRQF 206

Query: 119 -------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  IS+    N+ L ++  DID+FK +ND +GHP GD+V   +   L      P  
Sbjct: 207 DLEMNRHISNKNMKNDSLCLLLIDIDHFKYVNDTYGHPAGDEVXKQVGCILRETSQFPDL 266

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
             R GGEEFA             +   +R  +E+    +  G  I IT+S G++E  ++ 
Sbjct: 267 AFRKGGEEFALLIPNKGLAYGIRMGEQIRIAVESHPFQLLDGTKIKITVSVGVSE--YEG 324

Query: 232 PISTIIYRADQALYVAKKSGRNRV 255
                I  AD ALY +K++GRN+V
Sbjct: 325 SSEQFIQAADDALYYSKRNGRNKV 348


>gi|332091555|gb|EGI96638.1| diguanylate cyclase domain protein [Shigella boydii 5216-82]
          Length = 460

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454

Query: 257 CFS 259
            + 
Sbjct: 455 LWK 457


>gi|296102838|ref|YP_003612984.1| diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295057297|gb|ADF62035.1| diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 490

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 11/159 (6%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F       I++    +  +SI+  D+DYFK+ NDN+GHP GD+ +  L 
Sbjct: 326 DALTGLFNRRTFDEKILSEIAACADNDTPISILIVDVDYFKKYNDNYGHPEGDRCLTLLG 385

Query: 160 DQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           + L   +      V R GGEEFA     +  QEA  LA  + + + +  I  +  P   +
Sbjct: 386 NSLRESLTRNNQLVARYGGEEFALILPDADIQEAIRLAQTIIRNVFSLHIEHAFSPFGRV 445

Query: 219 TISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNR 254
           T+S G++     +       II  ADQALY AK++GRNR
Sbjct: 446 TVSVGVSTARAVDIAGSQQNIIIAADQALYQAKRAGRNR 484


>gi|149923203|ref|ZP_01911615.1| diguanylate cyclase (GGDEF domain) [Plesiocystis pacifica SIR-1]
 gi|149815919|gb|EDM75436.1| diguanylate cyclase (GGDEF domain) [Plesiocystis pacifica SIR-1]
          Length = 306

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 13/168 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
           SY R   L+ +D L+GL N   +   + S           ++++  DID+FK +ND+ GH
Sbjct: 141 SYER---LAHVDELTGLPNRRRYDERMHSELALARRSGRPVTLLLVDIDHFKDVNDSLGH 197

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+V+ F+ + L        +  R GGEEFA  A  ++ ++A++L   +R   E    
Sbjct: 198 QVGDEVLGFMGELLDASTRRGDWPFRFGGEEFAIIARNTTAKQASVLGERIRGAFEARSG 257

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             ++G     T S GIA     +    +  RAD  LY AK++GRNRVV
Sbjct: 258 ETAAGLR---TCSVGIASFEPADTPEALFARADARLYAAKQAGRNRVV 302


>gi|10957453|ref|NP_051575.1| GGDEF family protein [Deinococcus radiodurans R1]
 gi|6460882|gb|AAF12586.1|AE001826_55 GGDEF family protein [Deinococcus radiodurans R1]
          Length = 219

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 21/170 (12%)

Query: 103 LSRIDCLSGLLNHSAFISSL------GSYN-----EKLSIVFFDIDYFKQINDNFGHPVG 151
           L+R D L+G+LN       L      G ++     E++++ F DID+FK  ND F H  G
Sbjct: 45  LARQDALTGVLNRRGLDEGLSALQQSGEWSATQQAEQIAVGFIDIDHFKSFNDEFSHATG 104

Query: 152 DKVIAFLSD--QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN---S 206
           D+V+  L+   Q + +  TP  +GR GGEEF   A  + E+ A  L  D R++I +   S
Sbjct: 105 DEVLRCLAALLQQIALSPTPSLLGRYGGEEFVLVASVNEERTAWQLFEDCRELIRDHDWS 164

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            I    G ++ I  + G+        +  ++ +AD+ LY AK+ GRNR +
Sbjct: 165 GIAAQRGVTVSIGFATGVP-----ADLPQLLLKADEHLYQAKREGRNRTL 209


>gi|332561172|ref|ZP_08415490.1| diguanylate cyclase with GAF sensor [Rhodobacter sphaeroides WS8N]
 gi|332274970|gb|EGJ20286.1| diguanylate cyclase with GAF sensor [Rhodobacter sphaeroides WS8N]
          Length = 326

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 9/163 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q++  D L+G +    +++++            + +IV FD+D+FK IND  GH VGD
Sbjct: 161 LRQIALSDALTGAMTRRGWLAAVEKEMARGARQGTQAAIVLFDVDHFKAINDTHGHAVGD 220

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  L+ + ++  G    +GR+GGEEFA    G+   EA  LA  LR+   ++ I + +
Sbjct: 221 AVLQALTQRCLLHLGPADALGRIGGEEFAVLVPGAGLPEAMELAERLRRSFSDAPIEV-A 279

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254
           G ++ +T S G+           + +  AD+ LY AK +GRNR
Sbjct: 280 GQALRVTASFGVQGLDGDTGNAGSWLAAADRRLYEAKAAGRNR 322


>gi|322433804|ref|YP_004216016.1| diguanylate cyclase with beta propeller sensor [Acidobacterium sp.
            MP5ACTX9]
 gi|321161531|gb|ADW67236.1| diguanylate cyclase with beta propeller sensor [Acidobacterium sp.
            MP5ACTX9]
          Length = 1095

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 90/172 (52%), Gaps = 8/172 (4%)

Query: 91   KELFISYNRISQLSRIDCLSGLLNHSAFIS-SLGSY------NEKLSIVFFDIDYFKQIN 143
            ++L ++  ++ QL+  D L+ L N   F+  +   Y          S++  DID+FK +N
Sbjct: 912  RQLELANLKLGQLAIRDSLTNLYNRRHFLDLAEAEYLRSRRSQRTFSLLLMDIDHFKLVN 971

Query: 144  DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            D +GH  GD VI  ++D++           R GGEE+      +S  +A  LA  +R+ +
Sbjct: 972  DTWGHFTGDAVIQMVADRISSSLRATDTAARFGGEEYIVLLPETSSPQAIQLAERIREAV 1031

Query: 204  ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              S +  ++   I IT+S G AE      ++ ++ RAD+ALY AK +GRNR+
Sbjct: 1032 AASPLQ-TTAQDIAITLSIGCAEFDPNATLTQLLERADKALYAAKNAGRNRI 1082


>gi|256829679|ref|YP_003158407.1| PAS/PAC sensor-containing diguanylate cyclase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256578855|gb|ACU89991.1| diguanylate cyclase with PAS/PAC sensor [Desulfomicrobium baculatum
           DSM 4028]
          Length = 405

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 89/163 (54%), Gaps = 9/163 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS-----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++ S+ID L+G+ N + F+       L   +E  S + FDID+FK+IND +GH +GD+V
Sbjct: 243 LTKKSQIDGLTGIFNRNTFVQFAQEMLLSPAHEFASFMLFDIDHFKEINDTYGHDIGDEV 302

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  L   +  +       GR GGEEF       ++ +A ++A  L + I   Q   + G 
Sbjct: 303 LIELVRLIQQLLRREEIFGRFGGEEF-GILFPVAQDQAKVIAQRLLEAI--RQHRFTRG- 358

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++ +T+S G+ +        T+   AD+ LY+AK SGR+R+ C
Sbjct: 359 NLAVTVSMGLVDNSFSNVFDTMYKEADRLLYIAKNSGRDRLEC 401


>gi|225631178|ref|ZP_03787881.1| response regulator PleD [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591126|gb|EEH12305.1| response regulator PleD [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 460

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 10/167 (5%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +++S  D L+   N   F + L +        + +LS++  DIDYFK +ND+FGH  GD+
Sbjct: 291 AEMSIKDPLTNCYNRRYFDAHLRNIVKDSVEKDRRLSLMILDIDYFKIVNDSFGHSAGDE 350

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  +  ++         + R GGEEF      ++  +A  +A  +RKII      ++  
Sbjct: 351 LLKQIQKRISENIRVTDLLARFGGEEFVVVMPDTNVSDAYTIAERIRKIIAKEPFVLADK 410

Query: 214 PSIH-ITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
            + H +T+S GIAE      + I   I RAD+ LY AK SGRNRVV 
Sbjct: 411 NTTHNVTVSIGIAEMQGSDFDDIKKFIVRADRYLYKAKNSGRNRVVT 457


>gi|297582891|ref|YP_003698671.1| 7TM domain sensor diguanylate cyclase [Bacillus selenitireducens
           MLS10]
 gi|297141348|gb|ADH98105.1| 7TM domain sensor diguanylate cyclase [Bacillus selenitireducens
           MLS10]
          Length = 610

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 91/174 (52%), Gaps = 10/174 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
            ++  LS  D L+ + N   F   + +         ++LS++F DIDYFK+ ND +GH  
Sbjct: 437 KKLKDLSVRDPLTNVYNRGGFDQQMKAKWTEALQERKELSLLFVDIDYFKRYNDEYGHQA 496

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+ +  ++  L    G    V R GGEEF     G+SE++AA  A  L K I + QI  
Sbjct: 497 GDQTLISVAHTLQEALGEKAIVSRYGGEEFVLILPGASEEQAASAAATLLKAIRDQQIPH 556

Query: 211 S-SGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           S S  + ++T+S G   R   E       I +ADQALY AK++GR+R +   D+
Sbjct: 557 SQSQVAPYVTVSIGGISRIPNETDKPDAFIKQADQALYAAKEAGRDRYILAQDV 610


>gi|170726479|ref|YP_001760505.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169811826|gb|ACA86410.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
          Length = 341

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 89/158 (56%), Gaps = 10/158 (6%)

Query: 107 DCLSGLLNHSAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+G+LN  AF S    SL    + L ++  DID+FK  NDN+GH +GD+V+  ++ +L
Sbjct: 182 DALTGVLNRRAFDSDLKGSLSQSPDGLCLILIDIDHFKAFNDNYGHQLGDQVLKAVAKRL 241

Query: 163 --VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HI 218
                 GT ++  R GGEEFA     S  ++A  LA  +R+ +E   +      ++  +I
Sbjct: 242 GESCREGTKLY--RYGGEEFAVITANSQLRKARHLAEAMRRALEKVSLKDRRKDAMINNI 299

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T S G+A+       + +I ++D+ LY AK+ GRNRV+
Sbjct: 300 TASFGVAQWDPSLSATQLIEQSDKLLYEAKRLGRNRVM 337


>gi|26986874|ref|NP_742299.1| GGDEF domain-containing protein [Pseudomonas putida KT2440]
 gi|24981476|gb|AAN65763.1|AE016202_6 GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 645

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG----SYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q + +D L+GL N +A+   +      + E    L++   D+D+FK+INDN+GH  GDKV
Sbjct: 483 QKALLDPLTGLPNRAAWSERVEREMLDWQENGGHLAMAILDLDHFKRINDNYGHLAGDKV 542

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++DQL        F+ R GGEEF      ++   AA +A  LR  +E    +   G 
Sbjct: 543 LKIVADQLRKRLRGRDFIARFGGEEFVMLLPQTTPAVAAQVAEVLRATVEACPFHF-KGE 601

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT S G+      E    ++ RAD ALY AK+ GRNRV
Sbjct: 602 RVVITTSIGLGAFRSGERSDQVLKRADAALYRAKELGRNRV 642


>gi|54293727|ref|YP_126142.1| hypothetical protein lpl0780 [Legionella pneumophila str. Lens]
 gi|53753559|emb|CAH15014.1| hypothetical protein lpl0780 [Legionella pneumophila str. Lens]
          Length = 516

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 85/156 (54%), Gaps = 8/156 (5%)

Query: 107 DCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N  ++    + S   +      LS+   DID+FK INDNFGH  GDKV+  ++
Sbjct: 359 DSLTGLPNRESYEEHILDSFQRWKRSSSVLSLAVCDIDHFKCINDNFGHLAGDKVLKKVA 418

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
                   T  F+ R+GGEEF      +S +EA  +   LRK++E+  +       + +T
Sbjct: 419 MIFKSSIRTVDFIARIGGEEFVFIFEQTSSKEAFGVLEKLRKLVEDC-LFYYRDKKVDVT 477

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S G+     ++ I ++  RAD A+Y AKK+G+NRV
Sbjct: 478 VSFGLTTVTEEDDIESLFMRADNAMYKAKKAGKNRV 513


>gi|331682958|ref|ZP_08383566.1| diguanylate cyclase YddV (DGC) [Escherichia coli H299]
 gi|331079779|gb|EGI50969.1| diguanylate cyclase YddV (DGC) [Escherichia coli H299]
          Length = 460

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454

Query: 257 CFS 259
            + 
Sbjct: 455 LWK 457


>gi|300939080|ref|ZP_07153771.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
 gi|300455982|gb|EFK19475.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
          Length = 460

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454

Query: 257 CFS 259
            + 
Sbjct: 455 LWK 457


>gi|317154386|ref|YP_004122434.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
 gi|316944637|gb|ADU63688.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
          Length = 840

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 64/217 (29%), Positives = 107/217 (49%), Gaps = 20/217 (9%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L P  G+ YI     + +  S  ++ ++G      + E  ++   + +L+  D L+GL +
Sbjct: 623 LLPEGGVRYIRAAARAHMDNSSKVASIIGI--NQDITEQRLAEQELVRLATKDSLTGLFS 680

Query: 115 HSAFISSLGS--------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
              F+  LG+        Y E LS+V FD D FK +ND  GH VGD V+  +        
Sbjct: 681 RGHFME-LGTRAVEHARRYGEPLSVVMFDADRFKAVNDTHGHDVGDMVLKAIGRAAARTL 739

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA- 225
                +GR+GGEEFAA    ++ ++A ++A  +R  I  S+I + +   + +T+S G+  
Sbjct: 740 RDVDVLGRIGGEEFAAVLPQTTREQALLVAERVRAEIAASRIEVDADTVLSVTVSLGVCV 799

Query: 226 --ERCHKEP------ISTIIYRADQALYVAKKSGRNR 254
                  +P      +  ++  AD ALY AK++GRNR
Sbjct: 800 MDTAPDTDPGTATASLDKLLKGADTALYKAKQNGRNR 836


>gi|269929071|ref|YP_003321392.1| serine/threonine protein kinase [Sphaerobacter thermophilus DSM
            20745]
 gi|269788428|gb|ACZ40570.1| serine/threonine protein kinase [Sphaerobacter thermophilus DSM
            20745]
          Length = 1765

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 9/168 (5%)

Query: 97   YNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
            +  + +L+  D L+G  N    +       S    +N  L+ +  DID FK++ND  GH 
Sbjct: 1597 FAEVQRLAVTDDLTGTYNRRHLLTTAERELSRAQRFNRPLAAIILDIDEFKRVNDAHGHA 1656

Query: 150  VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            VGD+V+  ++D+L         +GR GGEEF      +    A  +A  LR  I    I 
Sbjct: 1657 VGDEVLRAVADRLRSGLREVDVLGRYGGEEFVIILPETDLISAYQIAERLRNSIAAEPIA 1716

Query: 210  ISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
             S+GP + +TIS G+A      P  ++++ R D  LY AK+ GRNRVV
Sbjct: 1717 TSTGP-VSVTISLGVAAADPTTPDFASLLSRIDDLLYTAKRRGRNRVV 1763


>gi|157273340|gb|ABV27239.1| two-component response regulator protein [Candidatus
           Chloracidobacterium thermophilum]
          Length = 750

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 17/176 (9%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           +  +Y+     +  D L+GL NH+ F+  L       G     LS++  D+D FK  ND 
Sbjct: 549 MLRAYHSARHRAITDGLTGLFNHAYFLEKLTREAELAGRSGRPLSVIMLDVDRFKHFNDT 608

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIE 204
            GH  G++++  L+  +   F     + R GGEEF      + + +AA+LA  L R++ E
Sbjct: 609 NGHETGNELLKDLARLMERCFRRSDLLARYGGEEFVVLLPNTPKSQAAVLAERLRRRVAE 668

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIST-----IIYRADQALYVAKKSGRNRV 255
              +   S P   +T+S G+A      P  T     ++  AD+ALY AK++GRNRV
Sbjct: 669 YPFVGRESQPGGCLTVSLGVA----AMPTDTSDPKQLLELADRALYRAKQNGRNRV 720


>gi|325917514|ref|ZP_08179719.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325536272|gb|EGD08063.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 992

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 8/174 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           +L  L I  +   + +  D L+GL N   F       IS        L +   DID+FK+
Sbjct: 799 LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSGRPLVLAILDIDHFKR 858

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND + H +GD V+  + + L     T     RLGGEEFA     +S  +A +L   +R 
Sbjct: 859 INDRYSHAIGDAVLHDVGELLTAAARTSDLPARLGGEEFALLLADTSLSDAQVLCERIRM 918

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  +++ +      + +T SAG+AE    +  S+++ RAD ALY AK +GR+R+
Sbjct: 919 LF-HARADWGDVEGLQVTFSAGLAELRDDDNGSSLMQRADHALYQAKSAGRDRI 971


>gi|191165101|ref|ZP_03026945.1| diguanylate cyclase [Escherichia coli B7A]
 gi|190904873|gb|EDV64578.1| diguanylate cyclase [Escherichia coli B7A]
          Length = 460

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454

Query: 257 CFS 259
            + 
Sbjct: 455 LWK 457


>gi|94310036|ref|YP_583246.1| diguanylate cyclase [Cupriavidus metallidurans CH34]
 gi|93353888|gb|ABF07977.1| Putative diguanylate cyclase (GGDEF domain) [Cupriavidus
           metallidurans CH34]
          Length = 653

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 92/179 (51%), Gaps = 15/179 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
            +LKEL    +       +D L+GL N   F       +         LSI+  D+D FK
Sbjct: 471 QMLKELRTQAD-------LDALTGLANRRYFENAAQKAVMHARKQGSALSILALDLDLFK 523

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+V+  ++ Q      +     R+GGEEF A    ++  +A ++A  +R
Sbjct: 524 RVNDTYGHAAGDRVLQVVARQFEGALRSTDLGARIGGEEFTAILFDTALGQAQVIAERIR 583

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             I+N+ I + SG +I  T+S GIA  R  +  ++    RAD ALY AK +GRNRV  +
Sbjct: 584 AAIQNTPIILESGEAITQTVSIGIAAYREDESDLAAAQERADAALYSAKAAGRNRVHVY 642


>gi|153837554|ref|ZP_01990221.1| ggdef domain protein [Vibrio parahaemolyticus AQ3810]
 gi|308094843|ref|ZP_05892972.2| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|308095339|ref|ZP_05905068.2| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           Peru-466]
 gi|308125425|ref|ZP_05775214.2| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
 gi|308126139|ref|ZP_05908168.2| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|149749150|gb|EDM59955.1| ggdef domain protein [Vibrio parahaemolyticus AQ3810]
 gi|308086834|gb|EFO36529.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           Peru-466]
 gi|308091770|gb|EFO41465.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|308110380|gb|EFO47920.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|308115592|gb|EFO53132.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
          Length = 402

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 83/168 (49%), Gaps = 10/168 (5%)

Query: 100 ISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I+ LS +D L+GL N  A        ++     N  +SIV  D+D FK IND +GH  GD
Sbjct: 222 INDLSHLDALTGLYNRRAMEVIVPNLVNQAREKNTPISIVMTDVDDFKTINDQYGHTTGD 281

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+A ++              R GG+EF    L ++E   A     +R+ IE     ++ 
Sbjct: 282 SVMATIATIFKQTLPESACTVRFGGDEFMIVLLANTENAKA-YTELVRRSIERETSLLAF 340

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                +T+S GI+E    + +   + RAD+ALY +K +GRN+V  F D
Sbjct: 341 KN--QVTMSFGISELMPNDSLQDALTRADEALYCSKHTGRNQVTTFQD 386


>gi|320156316|ref|YP_004188695.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           vulnificus MO6-24/O]
 gi|319931628|gb|ADV86492.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           vulnificus MO6-24/O]
          Length = 320

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 92/183 (50%), Gaps = 20/183 (10%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDY 138
           S + LKE   + + +S++SR D L+GL N + +  SL     ++       S+V FDID+
Sbjct: 142 SKTHLKE---TNHHLSEISRRDGLTGLFNRAFWEQSLKEEFSRMQFLDTPSSLVIFDIDH 198

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++ND +GH  GD+VI   +  L          GR GGEEF      +S  +A   +  
Sbjct: 199 FKKVNDTYGHHAGDEVIRRTASLLKKTARNSDLCGRFGGEEFTVLLPHTSADQARYFSER 258

Query: 199 LRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRN 253
           LRK IE   + +    +I+ TIS G+ E       H E +      AD ALY +K+ GRN
Sbjct: 259 LRKRIEQEIVCVEKF-AINYTISLGVCEFDAKFTSHTEWLKA----ADSALYHSKEGGRN 313

Query: 254 RVV 256
           +  
Sbjct: 314 QTT 316


>gi|228924160|ref|ZP_04087436.1| GGDEF domain protein [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228835650|gb|EEM81015.1| GGDEF domain protein [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 352

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 100/204 (49%), Gaps = 18/204 (8%)

Query: 65  LVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHSAF 118
           L++++ +V +    S+  GYI+      +L+  ELF     + Q + ID L+ L N   F
Sbjct: 150 LIKDIQVVGLYFISSITTGYITFISANYVLQSNELF---QTMKQYATIDALTRLGNVRQF 206

Query: 119 -------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  IS+    N+   ++  DID+FK +ND +GHP GD+V+  +   L      P  
Sbjct: 207 DLEMNRHISNKNMKNDPFCLLLIDIDHFKYVNDMYGHPAGDEVLKQVGCILRETSQFPDL 266

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
             R GGEEFA             +   +R  +EN    +  G  I IT+S G++E  ++E
Sbjct: 267 AFRKGGEEFALLIPNMGLAYGVRVGEQIRTAVENHPFQLLDGKKIKITVSVGVSE--YEE 324

Query: 232 PISTIIYRADQALYVAKKSGRNRV 255
                I  AD ALY +K++GRN+V
Sbjct: 325 SPEQFIQAADDALYYSKRNGRNKV 348


>gi|157375319|ref|YP_001473919.1| diguanylate cyclase with PAS/PAC sensor [Shewanella sediminis
           HAW-EB3]
 gi|157317693|gb|ABV36791.1| diguanylate cyclase with PAS/PAC sensor [Shewanella sediminis
           HAW-EB3]
          Length = 305

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 89/168 (52%), Gaps = 10/168 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151
           ++++ +  D L+GL N    ++ +G   E        L+++  D+D+FK++ND +GH VG
Sbjct: 140 KLTEQATYDSLTGLYNRREGLNRVGELYELTRRNKMPLAVLMLDVDHFKRVNDQYGHQVG 199

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+ + F+++ L         + R GGEEF       +E +A   A   R  +    + +S
Sbjct: 200 DQALHFIANTLRQTSRKSDVLVRYGGEEFLIFLPNVAEGDAITFAERYRTALAKKAMRLS 259

Query: 212 SGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
               +H+T+S GI+  C+++  ++ +I+ AD ALY AK   RN V  +
Sbjct: 260 KSQRLHLTVSIGIS--CYRQQTLTDLIHEADIALYEAKSRDRNTVCSY 305


>gi|331662969|ref|ZP_08363879.1| diguanylate cyclase YddV (DGC) [Escherichia coli TA143]
 gi|331058768|gb|EGI30745.1| diguanylate cyclase YddV (DGC) [Escherichia coli TA143]
          Length = 460

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454

Query: 257 CFS 259
            + 
Sbjct: 455 LWK 457


>gi|15806005|ref|NP_294705.1| GGDEF family protein [Deinococcus radiodurans R1]
 gi|6458709|gb|AAF10558.1|AE001950_10 GGDEF family protein [Deinococcus radiodurans R1]
          Length = 344

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 4/176 (2%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFK 140
           L+G + G     L     R +  ++ D L+GL N  AF  ++    +  ++   D+D+FK
Sbjct: 166 LVGALFGQQAIRLQRQARRSAHDAQRDPLTGLFNRRAFDQAVRQTVQGGTLALLDLDHFK 225

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND+ GH  GD+V+  ++D L+          R GGEEFA    G    EA  L + +R
Sbjct: 226 AINDHHGHMAGDRVLRGVADVLLDHLPAGGSAYRWGGEEFALLLPGLFPPEAEDLLDSVR 285

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +   Q+   +G   H+T+SAG+ +    E +  I    D AL  AK++GRNRV+
Sbjct: 286 QEV---QVRSFAG-GAHVTLSAGLGQYTVPEQLPGIFSEVDAALLAAKRAGRNRVM 337


>gi|320160392|ref|YP_004173616.1| hypothetical protein ANT_09820 [Anaerolinea thermophila UNI-1]
 gi|319994245|dbj|BAJ63016.1| hypothetical membrane protein [Anaerolinea thermophila UNI-1]
          Length = 525

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 13/170 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHP 149
           +  +   S  D L+  LNH AF+  L    +K       LS++  DID+FK+ ND +GH 
Sbjct: 343 HQEVETRSMQDSLTTALNHGAFLQKLSEEAQKALRGAYPLSLIMLDIDHFKEYNDRYGHL 402

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+  L+  +     +  +VGR GGEEFA     ++  +A  +A  ++K +    + 
Sbjct: 403 AGDQVLIELTRHIQRYLKSTDWVGRWGGEEFAVILPNATIPQAWGVARRIQKSLTRMTLK 462

Query: 210 ISSG-PSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRV 255
              G P    T+S GIA  C     + I  +I  ADQ LY AK  GR+++
Sbjct: 463 DREGNPIPAPTVSQGIA--CFPQEADEIYALIDLADQRLYRAKSRGRDQI 510


>gi|312879201|ref|ZP_07739001.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM
           12260]
 gi|310782492|gb|EFQ22890.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM
           12260]
          Length = 300

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 10/168 (5%)

Query: 98  NRISQLSR---IDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFG 147
           +R+S L R   +D L+   N      +L  + E+         ++FFDID+FK +ND +G
Sbjct: 130 DRLSILERMAYLDPLTQTGNRRYLEDTLKDWTEEFQGNGWPFGVLFFDIDHFKNVNDRYG 189

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+V+A ++  +         VGR GGEEF              +A  LR ++E S 
Sbjct: 190 HATGDQVLAMVARTIQGNLRNWDVVGRWGGEEFLVLCKNVDAPTLKEVAERLRLLVEAST 249

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                G  + +T+S G+     ++    ++ RAD+ LY +K+ GRNRV
Sbjct: 250 CRGEDGSDVQVTVSCGVTLAEFQDSPELLVSRADRLLYRSKQEGRNRV 297


>gi|269139665|ref|YP_003296366.1| GGDEF domain protein [Edwardsiella tarda EIB202]
 gi|267985326|gb|ACY85155.1| GGDEF domain protein [Edwardsiella tarda EIB202]
 gi|304559535|gb|ADM42199.1| hypothetical protein ETAF_2093 [Edwardsiella tarda FL6-60]
          Length = 302

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 83/166 (50%), Gaps = 6/166 (3%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--EKLSIVFFDIDYFKQINDNFG 147
           L+ L     R+  L+  D L+GL N   F SSL S       S+   D+D+FKQIND FG
Sbjct: 132 LRYLARVRGRLRYLALFDDLTGLPNRRHFYSSLMSQPLPRHFSLFIIDLDHFKQINDEFG 191

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD+V+      L   F    F  R+GGEEF  A +  SE  A + A   R   + S 
Sbjct: 192 HAVGDRVLCQFGRLLHSEFVGSAFPARIGGEEF--AVILESEDRAWLEARAARLQQQASM 249

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           + I+    + ++I  GI      E ++  + R D ALY AK +GRN
Sbjct: 250 VRITEQRGLTVSIGVGIY--AAGETLAHFVARVDGALYQAKGAGRN 293


>gi|152994923|ref|YP_001339758.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150835847|gb|ABR69823.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 332

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 5/154 (3%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ L N  A     S +  + + + ++  DID+FK IND +GH +GD V+  ++D L 
Sbjct: 181 DDLTNLKNRHALKADFSVIYKHFQSIHMLMIDIDHFKSINDKYGHDIGDSVLTEVADLLT 240

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   + RLGGEEF       S++ A  +A  +R+ IE  +I +S    I +T+S G
Sbjct: 241 QSIQVKE-IYRLGGEEFVCLLKDISDENAYKIAEKVRQSIEQ-KIFLSHNTPIQVTVSIG 298

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I+    +   +  +  ADQ LY AK+ GRN++ C
Sbjct: 299 ISSLQKEHEFTDFLRSADQKLYQAKREGRNQICC 332


>gi|91793907|ref|YP_563558.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91715909|gb|ABE55835.1| diguanylate cyclase [Shewanella denitrificans OS217]
          Length = 518

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 81/163 (49%), Gaps = 8/163 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +L+ +D L+ L N +A    +         +N  L I   DID+FK INDNFGH  GDK
Sbjct: 354 QKLNLLDPLTQLANRAALEDKMEQEYRHHKRFNTPLWIAVIDIDHFKSINDNFGHSTGDK 413

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  ++  L        FV R GGEEF       +E   + L N +R+ I+N      + 
Sbjct: 414 TLQVIAMALKNSLRESEFVARYGGEEFVLLLPDVTELHISQLLNRVREKIKNIPFKFKNQ 473

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I +T+S G A+    E  +    RAD ALY AK +GR+RVV
Sbjct: 474 -RITVTLSIGAAQVLENELCTETFERADAALYKAKNNGRDRVV 515


>gi|323160592|gb|EFZ46533.1| diguanylate cyclase domain protein [Escherichia coli E128010]
 gi|323170144|gb|EFZ55799.1| diguanylate cyclase domain protein [Escherichia coli LT-68]
          Length = 458

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 279 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 332

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 333 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 392

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 393 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 452

Query: 257 CFS 259
            + 
Sbjct: 453 LWK 455


>gi|320179730|gb|EFW54678.1| Putative Heme-regulated two-component response regulator [Shigella
           boydii ATCC 9905]
          Length = 460

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454

Query: 257 CFS 259
            + 
Sbjct: 455 LWK 457


>gi|323978342|gb|EGB73428.1| GGDEF domain-containing protein [Escherichia coli TW10509]
          Length = 460

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454

Query: 257 CFS 259
            + 
Sbjct: 455 LWK 457


>gi|160898913|ref|YP_001564495.1| diguanylate cyclase [Delftia acidovorans SPH-1]
 gi|160364497|gb|ABX36110.1| diguanylate cyclase [Delftia acidovorans SPH-1]
          Length = 393

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 84/159 (52%), Gaps = 7/159 (4%)

Query: 107 DCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ LLN  AF  +        +   +S++  DID+FK+IND++GH  GD+V+  ++  
Sbjct: 228 DSLTNLLNRRAFQEAAELRLADPHMAPISVLIGDIDHFKRINDSWGHDCGDRVLQAVAQT 287

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L         V R GGEEF    + ++ QEA  +A  +R  +      +++G    +TIS
Sbjct: 288 LQQHVRNDDLVCRFGGEEFVLLLMRTTPQEAERVAQRIRAQLSADGYVLAAGQ--RVTIS 345

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            GIA       ++  + RAD  LY AK++GR+RV   +D
Sbjct: 346 FGIAPVAANTALTDALTRADGLLYAAKQAGRDRVHVATD 384


>gi|90419568|ref|ZP_01227478.1| response regulator [Aurantimonas manganoxydans SI85-9A1]
 gi|90336505|gb|EAS50246.1| response regulator [Aurantimonas manganoxydans SI85-9A1]
          Length = 454

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 75/127 (59%), Gaps = 2/127 (1%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  DID+FK+IND +GH  GD V+   + +L           R GGEEFA   +G+ E
Sbjct: 323 SVLMADIDHFKRINDGWGHGAGDLVLKDFARRLSGSLRASDLACRFGGEEFAVLMIGADE 382

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAK 248
             A  +A+ +R+ + +    I +G  + +T+S G+A     ++  +T+I RADQALY AK
Sbjct: 383 TTAMAVADRIRRSVCDLPFQI-AGELLTVTVSEGLAVFDARRDNAATLIERADQALYEAK 441

Query: 249 KSGRNRV 255
           + GRNRV
Sbjct: 442 RDGRNRV 448


>gi|74312145|ref|YP_310564.1| hypothetical protein SSON_1634 [Shigella sonnei Ss046]
 gi|123617146|sp|Q3Z1N3|YDDV_SHISS RecName: Full=Diguanylate cyclase yddV; Short=DGC
 gi|73855622|gb|AAZ88329.1| conserved hypothetical protein [Shigella sonnei Ss046]
          Length = 460

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVHSSDYVFRYGGDEFIIVLTEASENETLRTA 394

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454

Query: 257 CFS 259
            + 
Sbjct: 455 LWK 457


>gi|323964199|gb|EGB59683.1| GGDEF domain-containing protein [Escherichia coli M863]
 gi|327254139|gb|EGE65768.1| diguanylate cyclase domain protein [Escherichia coli STEC_7v]
          Length = 460

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454

Query: 257 CFS 259
            + 
Sbjct: 455 LWK 457


>gi|327440463|dbj|BAK16828.1| response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Solibacillus silvestris StLB046]
          Length = 545

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 10/200 (5%)

Query: 69  LSLVIISITISLLLGYISGSIL----KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           L  +   +   +L+ Y+   ++     EL I  + ++QL     ++  L     +     
Sbjct: 209 LDFIKKPLDADILISYVRNRLVFKQALELSIMTDELTQLYNRKYMNTQLEF--LMEQFEK 266

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
             E+ SI   DID+FK IND +GH VGD+V+   S+ ++        + R GGEEF    
Sbjct: 267 RGEQFSIAIADIDFFKNINDTYGHIVGDEVLKGFSNLIMSAKREEDILFRFGGEEFVLVM 326

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQ 242
             +S+  A  +   LR I+   Q    +  S +IT S+GIAE  H  K P   ++ +ADQ
Sbjct: 327 PNTSKNTAFSIMERLRTIV-GKQPFKGNEQSFNITFSSGIAEINHQNKHP-KALVEQADQ 384

Query: 243 ALYVAKKSGRNRVVCFSDIE 262
           ALY AK SGRN+ V F+  E
Sbjct: 385 ALYKAKTSGRNQTVLFTKEE 404


>gi|320156561|ref|YP_004188940.1| amino acid transporter [Vibrio vulnificus MO6-24/O]
 gi|319931873|gb|ADV86737.1| amino acid transporter [Vibrio vulnificus MO6-24/O]
          Length = 388

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 80/164 (48%), Gaps = 9/164 (5%)

Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + ++S  D L+G  N         A ISS     + L  +  DID+FK +ND +GH  GD
Sbjct: 224 LQEMSLKDNLTGFFNRHGLEQKLPALISSAQHRQQPLIAMMCDIDHFKLVNDTYGHQEGD 283

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++   ++ +           R GGEEF           A  LA  +R  IE SQ     
Sbjct: 284 IILQRCAEAIRAQLPQEHLAFRYGGEEFLIILSQYELVRAKQLAETIRMTIEQSQF--VQ 341

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            P  H+T+S G+ E    + + +++ RADQALY+AK  GRN+VV
Sbjct: 342 LPERHLTMSFGLTELSTLDNVESMVKRADQALYLAKSQGRNQVV 385


>gi|146339021|ref|YP_001204069.1| diguanylate cyclase [Bradyrhizobium sp. ORS278]
 gi|146191827|emb|CAL75832.1| Putative diguanylate cyclase (GGDEF) with GAF and HAMP domains
           [Bradyrhizobium sp. ORS278]
          Length = 648

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 77/157 (49%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N    + +          +   +S+V  D+D+FK  NDN GH  GD V+  + 
Sbjct: 444 DVLTGLNNRRYLLETARRELLRAARHKSPVSVVTLDVDHFKTFNDNHGHDAGDTVLRHVG 503

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L   F       R GGEEF     G++ +E  + A +LR  IE+ +I  +      +T
Sbjct: 504 EILRATFADDGVPCRFGGEEFVVLLPGATTEEGGVRAEELRARIESMKIRYADSYLPRVT 563

Query: 220 ISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV 255
           ISAG+A           I R AD ALY AK+ GRNRV
Sbjct: 564 ISAGVASYPDAGGSFMDILRVADDALYQAKQKGRNRV 600


>gi|66044929|ref|YP_234770.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63255636|gb|AAY36732.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 354

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 114/240 (47%), Gaps = 15/240 (6%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV---IISIT 77
           S S    +I  S    ++    + +A   L +  L+P  G++   V  L +    I S++
Sbjct: 97  SLSVAVMIILCSTLLVVYTRDYLLVA--VLAWCILSPAQGVDTDSVATLFMTLFFITSVS 154

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFF 134
           +  +L +     L+ +    ++  +LS  D L+ +LN  A + +L ++   N     +  
Sbjct: 155 LGSVLNHTYTRTLRTVLSLEHQFRELSMTDDLTAILNRRALMQALDNHVLNNSAGYFLML 214

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID FK IND FGH  GD+ +  ++  L    G+  F GR+GGEEF       SE +A  
Sbjct: 215 DIDDFKTINDQFGHDAGDQALRVMAGCLQKTVGSLAF-GRMGGEEFGVILPMCSEDDARD 273

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
              DL + I  S   ++  P   +T SAG+A+       S ++  AD  LY AK+ G++R
Sbjct: 274 YVLDLLECIRKS---LAVSP---LTCSAGLADIPAAADSSAVLKTADINLYKAKRGGKDR 327


>gi|326424067|ref|NP_761576.2| GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|319999445|gb|AAO11103.2| GGDEF family protein [Vibrio vulnificus CMCP6]
          Length = 398

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 80/164 (48%), Gaps = 9/164 (5%)

Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + ++S  D L+G  N         A ISS     + L  +  DID+FK +ND +GH  GD
Sbjct: 234 LQEMSLKDNLTGFFNRHGLEQKLPALISSAQHRQQPLIAMMCDIDHFKLVNDTYGHQEGD 293

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++   ++ +           R GGEEF           A  LA  +R  IE SQ     
Sbjct: 294 IILQRCAEAIRAQLPQQHLAFRYGGEEFLIILSQYELVRAKQLAETIRMTIEQSQF--VQ 351

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            P  H+T+S G+ E    + + +++ RADQALY+AK  GRN+VV
Sbjct: 352 LPERHLTMSFGLTELSTLDNVESMVKRADQALYLAKSQGRNQVV 395


>gi|307720346|ref|YP_003891486.1| response regulator receiver modulated diguanylate cyclase
           [Sulfurimonas autotrophica DSM 16294]
 gi|306978439|gb|ADN08474.1| response regulator receiver modulated diguanylate cyclase
           [Sulfurimonas autotrophica DSM 16294]
          Length = 417

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 81/164 (49%), Gaps = 7/164 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I+  +  D L+GL N   F  ++  Y        EK SI   DID+FK+IND +GH VGD
Sbjct: 251 ITNYANRDYLTGLYNRRYFFETINEYIDEIKDSGEKFSIGMIDIDHFKKINDTYGHDVGD 310

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KVI  L+D L         V R GGEEF       ++  A  + N LR+  E    ++  
Sbjct: 311 KVITALADILRSSTNPHDVVARFGGEEFCVVLKNINQYSAHEIFNRLREEAEKFSFHLKD 370

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              I+ ++S G      +E +   I  AD  LY AK +GR++VV
Sbjct: 371 EQYINFSVSIGALLFNEEESLEENINAADMLLYKAKDNGRDQVV 414


>gi|300819785|ref|ZP_07099973.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
 gi|300527666|gb|EFK48728.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
          Length = 460

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454

Query: 257 CFS 259
            + 
Sbjct: 455 LWK 457


>gi|157158939|ref|YP_001462767.1| diguanylate cyclase [Escherichia coli E24377A]
 gi|170683103|ref|YP_001743737.1| diguanylate cyclase [Escherichia coli SMS-3-5]
 gi|193066931|ref|ZP_03047900.1| diguanylate cyclase [Escherichia coli E110019]
 gi|256018293|ref|ZP_05432158.1| putative diguanylate cyclase YddV [Shigella sp. D9]
 gi|301023411|ref|ZP_07187196.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
 gi|307314761|ref|ZP_07594356.1| diguanylate cyclase [Escherichia coli W]
 gi|331673019|ref|ZP_08373796.1| diguanylate cyclase YddV (DGC) [Escherichia coli TA280]
 gi|332279339|ref|ZP_08391752.1| diguanylate cyclase [Shigella sp. D9]
 gi|157080969|gb|ABV20677.1| diguanylate cyclase [Escherichia coli E24377A]
 gi|170520821|gb|ACB18999.1| diguanylate cyclase [Escherichia coli SMS-3-5]
 gi|192959521|gb|EDV89955.1| diguanylate cyclase [Escherichia coli E110019]
 gi|300397039|gb|EFJ80577.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
 gi|306905728|gb|EFN36255.1| diguanylate cyclase [Escherichia coli W]
 gi|315060766|gb|ADT75093.1| predicted diguanylate cyclase [Escherichia coli W]
 gi|323378668|gb|ADX50936.1| diguanylate cyclase [Escherichia coli KO11]
 gi|331069798|gb|EGI41176.1| diguanylate cyclase YddV (DGC) [Escherichia coli TA280]
 gi|332101691|gb|EGJ05037.1| diguanylate cyclase [Shigella sp. D9]
          Length = 460

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454

Query: 257 CFS 259
            + 
Sbjct: 455 LWK 457


>gi|114321024|ref|YP_742707.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227418|gb|ABI57217.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 509

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 14/169 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAFI---------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           + + +R D L+GL N              +++G +   L++V  D+D+FKQ+ND +GH  
Sbjct: 334 LEERTRRDPLTGLYNRDQLFRRLQDEFTGAAMGGW--PLTLVVLDLDHFKQVNDEYGHLA 391

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  +S  L         V R GGEEF     G   Q+A  +   + + +  + + +
Sbjct: 392 GDQVLRRVSAVLHDAVRGEDVVARYGGEEFVLLLPGVHWQDAQRVVRRVLERVRGTDLGL 451

Query: 211 SSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVV 256
              P + +T SAG+A +    P     +++  ADQALY AK  GRNR+V
Sbjct: 452 KEAPQLRVTASAGLAVQEGGRPFVDTDSLVAAADQALYTAKNQGRNRLV 500


>gi|257487298|ref|ZP_05641339.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|331009096|gb|EGH89152.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 425

 Score = 88.2 bits (217), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 95/188 (50%), Gaps = 22/188 (11%)

Query: 85  ISGSILKELFISYNRISQLSR---------IDCLSGLLNHSA-------FISSLGSYNEK 128
           + G+I   + IS +  ++L R          D L+GL N  A        I +     + 
Sbjct: 233 LEGTITHYVSISQDVTTRLGREQKLLEIAHSDPLTGLNNRRAAEHTLERLIDTARISGKP 292

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            +++  DID+FK +ND +GHP GD+V+  ++  L           R GGEEF      SS
Sbjct: 293 FTLIIGDIDHFKSVNDRYGHPAGDRVLTSVAVILKQRIRLQDVAARWGGEEFLIFVPDSS 352

Query: 189 EQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
              AA LA+ +R+ +E   I N  S     +TIS G+A+    E  +++I RAD+ALY A
Sbjct: 353 LDHAAELADRIREGVEGLLIPNTGS-----VTISLGVAQLSPGETAASLIQRADKALYQA 407

Query: 248 KKSGRNRV 255
           K+ GRNRV
Sbjct: 408 KRRGRNRV 415


>gi|161502892|ref|YP_001570004.1| hypothetical protein SARI_00950 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864239|gb|ABX20862.1| hypothetical protein SARI_00950 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 570

 Score = 88.2 bits (217), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 98/201 (48%), Gaps = 19/201 (9%)

Query: 74  ISITISLLLGYISGSIL----------KELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           ISI ++LL G  +  +L          + +F+  + +   +  D L+ L N  A      
Sbjct: 358 ISIALTLLWGLFTAMLLISWGVIRHMVRNMFVLQSSLQWQAWHDPLTRLYNRGALFEKAS 417

Query: 124 -------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                   + +  S++  D+DYFK +ND FGH  GD+V++  +  +     +    GR+G
Sbjct: 418 RLAQRYREFRKPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRSHDIAGRVG 477

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPIS 234
           GEEF      +++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE        
Sbjct: 478 GEEFCIVLPDATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFE 537

Query: 235 TIIYRADQALYVAKKSGRNRV 255
            +   AD+ LY AK+SGRNR+
Sbjct: 538 QLQSLADKRLYYAKQSGRNRI 558


>gi|170020179|ref|YP_001725133.1| diguanylate cyclase [Escherichia coli ATCC 8739]
 gi|312971654|ref|ZP_07785829.1| diguanylate cyclase domain protein [Escherichia coli 1827-70]
 gi|169755107|gb|ACA77806.1| diguanylate cyclase [Escherichia coli ATCC 8739]
 gi|310336251|gb|EFQ01451.1| diguanylate cyclase domain protein [Escherichia coli 1827-70]
 gi|323937458|gb|EGB33735.1| GGDEF domain-containing protein [Escherichia coli E1520]
          Length = 460

 Score = 88.2 bits (217), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454

Query: 257 CFS 259
            + 
Sbjct: 455 LWK 457


>gi|239905372|ref|YP_002952111.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
 gi|239795236|dbj|BAH74225.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
          Length = 406

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 96/194 (49%), Gaps = 14/194 (7%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------L 122
           S+ I +     +L   S  +  EL  + + + Q ++ D L+GL N   F+         L
Sbjct: 204 SMWIFAFLTFCVLSMTSSRVEAELREARDALRQQAQTDALTGLSNRRHFLEQAQAVLEDL 263

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
            ++  + S++  D+D+FK+IND  GH  GD  +   +  L         +GRLGGEEF  
Sbjct: 264 EAHGGRASLIMLDLDHFKRINDVHGHQAGDLALQEAARHLRAALRDGDVIGRLGGEEFGV 323

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
              G    EA  +A  LR+ +  S+        + +T S G+A+   +  + +++ +AD+
Sbjct: 324 LLPGLEAGEALAVARQLRRAVAASRPG-----GLRVTASFGLADGALR--LDSLLAQADE 376

Query: 243 ALYVAKKSGRNRVV 256
            LY AK++GR+R+ 
Sbjct: 377 YLYAAKEAGRDRIA 390


>gi|190892031|ref|YP_001978573.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190697310|gb|ACE91395.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 417

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 93/187 (49%), Gaps = 12/187 (6%)

Query: 89  ILKELFIS-YNRIS--QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           IL+EL  +  +RI   Q +  D L+  +   AF       IS    +  +LS + FDID+
Sbjct: 154 ILEELAAAAMDRIDLMQSAATDSLTEAMTRRAFKQEADQLISLALRHQHELSCIVFDIDH 213

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND +GH  GD V+  ++             GR+GGEEFA        Q A  +A  
Sbjct: 214 FKQVNDRYGHAAGDAVLKAVASVCKATLRAGDLFGRIGGEEFAVVLPHVDRQGALAVAEK 273

Query: 199 LRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           LR  I    I+   G ++H+T S G  A     + I T++ +AD A+Y AK  GRNR V 
Sbjct: 274 LRAAIAFQPIHGDHG-NLHVTASLGSSALSIVSKDIETLLAQADAAMYQAKHGGRNRCVS 332

Query: 258 FSDIENN 264
           +S I  +
Sbjct: 333 WSSIHAD 339


>gi|149376359|ref|ZP_01894122.1| diguanylate cyclase [Marinobacter algicola DG893]
 gi|149359373|gb|EDM47834.1| diguanylate cyclase [Marinobacter algicola DG893]
          Length = 613

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 8/176 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFK 140
           S ++EL  +  +++ LS  D L+GL N            +      + L+I   D D+FK
Sbjct: 430 STMRELEKANRQLANLSLNDALTGLYNRRHMDNLLPELCAEARRTGQPLTIALLDADHFK 489

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDL 199
            +ND++GH  GD+ +  ++  L      P  V  R GGEEFA    G+  + A  + N +
Sbjct: 490 AVNDSWGHEFGDRCLQHIAGILRRHVKRPRDVAIRFGGEEFAILLPGTDAEGALGVCNGI 549

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + I   ++    G  + +T+SAG A    ++    +  RAD+ALY AK  GRNR 
Sbjct: 550 LEDIAAIRVPADDGTPVTLTMSAGTATLLQEDDERDLFRRADEALYRAKARGRNRT 605


>gi|331652852|ref|ZP_08353857.1| diguanylate cyclase YddV (DGC) [Escherichia coli M718]
 gi|331048950|gb|EGI21022.1| diguanylate cyclase YddV (DGC) [Escherichia coli M718]
          Length = 460

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454

Query: 257 CFS 259
            + 
Sbjct: 455 LWK 457


>gi|15801648|ref|NP_287665.1| hypothetical protein Z2219 [Escherichia coli O157:H7 EDL933]
 gi|15831349|ref|NP_310122.1| hypothetical protein ECs2095 [Escherichia coli O157:H7 str. Sakai]
 gi|145698262|ref|NP_416007.3| diguanylate cyclase; cold- and stationary phase-induced
           oxygen-dependent biofilm regulator; positively regulates
           csgBAC and pgaABCD [Escherichia coli str. K-12 substr.
           MG1655]
 gi|168748905|ref|ZP_02773927.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4113]
 gi|168756138|ref|ZP_02781145.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4401]
 gi|168761414|ref|ZP_02786421.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4501]
 gi|168768973|ref|ZP_02793980.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4486]
 gi|168774275|ref|ZP_02799282.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4196]
 gi|168781468|ref|ZP_02806475.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4076]
 gi|168788451|ref|ZP_02813458.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC869]
 gi|168799377|ref|ZP_02824384.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC508]
 gi|170081161|ref|YP_001730481.1| diguanylate cyclase [Escherichia coli str. K-12 substr. DH10B]
 gi|188493713|ref|ZP_03000983.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 53638]
 gi|195936982|ref|ZP_03082364.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4024]
 gi|208811026|ref|ZP_03252859.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4206]
 gi|208814781|ref|ZP_03255960.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4045]
 gi|208818469|ref|ZP_03258789.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4042]
 gi|209396130|ref|YP_002270491.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4115]
 gi|217329403|ref|ZP_03445483.1| diguanylate cyclase [Escherichia coli O157:H7 str. TW14588]
 gi|238900712|ref|YP_002926508.1| putative diguanylate cyclase [Escherichia coli BW2952]
 gi|254793036|ref|YP_003077873.1| putative diguanylate cyclase [Escherichia coli O157:H7 str.
           TW14359]
 gi|256022830|ref|ZP_05436695.1| predicted diguanylate cyclase [Escherichia sp. 4_1_40B]
 gi|261224548|ref|ZP_05938829.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261257117|ref|ZP_05949650.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291282592|ref|YP_003499410.1| Diguanylate cyclase yddV [Escherichia coli O55:H7 str. CB9615]
 gi|293414842|ref|ZP_06657485.1| diguanylate cyclase yddV [Escherichia coli B185]
 gi|300950964|ref|ZP_07164840.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1]
 gi|300956093|ref|ZP_07168415.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1]
 gi|301018348|ref|ZP_07182854.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
 gi|301645180|ref|ZP_07245136.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|307138140|ref|ZP_07497496.1| diguanylate cyclase [Escherichia coli H736]
 gi|331642073|ref|ZP_08343208.1| diguanylate cyclase YddV (DGC) [Escherichia coli H736]
 gi|92087009|sp|P0AA89|DOSC_ECOLI RecName: Full=Diguanylate cyclase DosC; Short=DGC
 gi|93140421|sp|P0AA90|YDDV_ECO57 RecName: Full=Diguanylate cyclase yddV; Short=DGC
 gi|12515187|gb|AAG56278.1|AE005356_4 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13361561|dbj|BAB35518.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|145693134|gb|AAC74563.3| diguanylate cyclase; cold- and stationary phase-induced
           oxygen-dependent biofilm regulator; positively regulates
           csgBAC and pgaABCD [Escherichia coli str. K-12 substr.
           MG1655]
 gi|169888996|gb|ACB02703.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|187770056|gb|EDU33900.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4196]
 gi|188016729|gb|EDU54851.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4113]
 gi|188488912|gb|EDU64015.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 53638]
 gi|189000809|gb|EDU69795.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4076]
 gi|189356678|gb|EDU75097.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4401]
 gi|189361865|gb|EDU80284.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4486]
 gi|189368142|gb|EDU86558.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4501]
 gi|189371739|gb|EDU90155.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC869]
 gi|189378163|gb|EDU96579.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC508]
 gi|208724532|gb|EDZ74240.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4206]
 gi|208731429|gb|EDZ80117.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4045]
 gi|208738592|gb|EDZ86274.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4042]
 gi|209157530|gb|ACI34963.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4115]
 gi|209770568|gb|ACI83596.1| hypothetical protein ECs2095 [Escherichia coli]
 gi|209770570|gb|ACI83597.1| hypothetical protein ECs2095 [Escherichia coli]
 gi|209770572|gb|ACI83598.1| hypothetical protein ECs2095 [Escherichia coli]
 gi|209770574|gb|ACI83599.1| hypothetical protein ECs2095 [Escherichia coli]
 gi|209770576|gb|ACI83600.1| hypothetical protein ECs2095 [Escherichia coli]
 gi|217317842|gb|EEC26270.1| diguanylate cyclase [Escherichia coli O157:H7 str. TW14588]
 gi|238862231|gb|ACR64229.1| predicted diguanylate cyclase [Escherichia coli BW2952]
 gi|254592436|gb|ACT71797.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str.
           TW14359]
 gi|260449387|gb|ACX39809.1| diguanylate cyclase [Escherichia coli DH1]
 gi|290762465|gb|ADD56426.1| Diguanylate cyclase yddV [Escherichia coli O55:H7 str. CB9615]
 gi|291432490|gb|EFF05469.1| diguanylate cyclase yddV [Escherichia coli B185]
 gi|299882541|gb|EFI90752.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
 gi|300317030|gb|EFJ66814.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1]
 gi|300449760|gb|EFK13380.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1]
 gi|301076540|gb|EFK91346.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|315136130|dbj|BAJ43289.1| diguanylate cyclase yddV [Escherichia coli DH1]
 gi|320190058|gb|EFW64709.1| Putative Heme-regulated two-component response regulator
           [Escherichia coli O157:H7 str. EC1212]
 gi|320636922|gb|EFX06787.1| diguanylate cyclase [Escherichia coli O157:H7 str. G5101]
 gi|320642277|gb|EFX11570.1| diguanylate cyclase [Escherichia coli O157:H- str. 493-89]
 gi|320647629|gb|EFX16386.1| diguanylate cyclase [Escherichia coli O157:H- str. H 2687]
 gi|320653261|gb|EFX21400.1| diguanylate cyclase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320658966|gb|EFX26592.1| diguanylate cyclase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320663802|gb|EFX31031.1| diguanylate cyclase [Escherichia coli O157:H7 str. LSU-61]
 gi|323942161|gb|EGB38335.1| GGDEF domain-containing protein [Escherichia coli E482]
 gi|326340639|gb|EGD64436.1| Putative Heme-regulated two-component response regulator
           [Escherichia coli O157:H7 str. 1044]
 gi|326340891|gb|EGD64684.1| Putative Heme-regulated two-component response regulator
           [Escherichia coli O157:H7 str. 1125]
 gi|331038871|gb|EGI11091.1| diguanylate cyclase YddV (DGC) [Escherichia coli H736]
 gi|332343158|gb|AEE56492.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 460

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454

Query: 257 CFS 259
            + 
Sbjct: 455 LWK 457


>gi|328470365|gb|EGF41276.1| GGDEF family protein [Vibrio parahaemolyticus 10329]
          Length = 454

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 95/167 (56%), Gaps = 7/167 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           K+L ++  ++ +L+  D L+ L N    I   ++L S  + ++++ FDID FK IND +G
Sbjct: 271 KQLTLANQQLLELTLTDPLTKLYNRRHLIERLATLSSLQKNVTVMVFDIDDFKSINDKYG 330

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD+ I  ++D    +    + + R+GGEEFA      SE+EA  LA  +   + +  
Sbjct: 331 HLIGDQAIVAVADTAKSLTDERITLARIGGEEFALVTASLSEKEAETLAKAICSCVYDRP 390

Query: 208 INISSGPSIHITISAGIAERCHKEPISTI-IYRADQALYVAKKSGRN 253
           + + +G +IH+++S G A   ++E    I ++ ADQ +Y  K +G+N
Sbjct: 391 V-LLNGQAIHVSVSLGCA--YYREFKGIINLHEADQLMYCGKMNGKN 434


>gi|323156581|gb|EFZ42727.1| diguanylate cyclase domain protein [Escherichia coli EPECa14]
 gi|323176588|gb|EFZ62180.1| diguanylate cyclase domain protein [Escherichia coli 1180]
          Length = 458

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 279 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 332

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 333 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 392

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 393 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 452

Query: 257 CFS 259
            + 
Sbjct: 453 LWK 455


>gi|307946357|ref|ZP_07661692.1| diguanylate cyclase [Roseibium sp. TrichSKD4]
 gi|307770021|gb|EFO29247.1| diguanylate cyclase [Roseibium sp. TrichSKD4]
          Length = 651

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 80/159 (50%), Gaps = 10/159 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F+ SL S  EK       LS++  D+D+FK  NDN GH  GD V+  + 
Sbjct: 454 DPLTGLFNRRHFVESLRSKIEKARHKGHSLSLISIDVDHFKTFNDNNGHDAGDMVLRAVG 513

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L   F       R+GGEEF      ++ +EA   A  LR++IE   +         IT
Sbjct: 514 TALEQQFEGDDLPCRIGGEEFMVLLPDATSEEAMERAEALRQVIEKITVRYGEKNLPKIT 573

Query: 220 ISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256
           IS+G+A  C  H      +I  AD ALY +K SGRN+V 
Sbjct: 574 ISSGVAS-CPDHGMMPQDLIKVADDALYRSKDSGRNQVT 611


>gi|296272721|ref|YP_003655352.1| PAS/PAC and GAF sensor-containg diguanylate cyclase [Arcobacter
           nitrofigilis DSM 7299]
 gi|296096895|gb|ADG92845.1| diguanylate cyclase with PAS/PAC and GAF sensors [Arcobacter
           nitrofigilis DSM 7299]
          Length = 649

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 80/160 (50%), Gaps = 7/160 (4%)

Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   FI       S    Y   LS++ FDID+FK +ND FGH +GD V+  ++
Sbjct: 489 DFLTGLPNRRYFIEQSELEISRKLRYGGSLSLIMFDIDHFKILNDKFGHKMGDLVLQKIA 548

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           +    V      +GR+GGEEFA     +  +EA  +A  LR  I    +        + T
Sbjct: 549 EITRSVLRDIDIIGRIGGEEFAILLPRTDIKEAENIAERLRLEISKGIVKTDKVEITNFT 608

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            S G+      + I  ++  AD ALY AK SGRNRV  F+
Sbjct: 609 ASFGVVLDTKNKTIDELLVSADNALYEAKNSGRNRVCIFN 648


>gi|167908351|ref|ZP_02495556.1| diguanylate cyclase [Burkholderia pseudomallei NCTC 13177]
          Length = 311

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 88/168 (52%), Gaps = 9/168 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ + +  D L+G+ N   F        S    Y   LS++ FD+D+FK IND FGH VG
Sbjct: 144 KLQEYANRDGLTGIANRRFFEARLRDEFSRWQRYGGNLSVLLFDLDHFKTINDRFGHVVG 203

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++ ++V V  +    GR GGEEFA     +S  EA ++A  +R+ I ++ I  +
Sbjct: 204 DNVLRVMAQRVVDVVRSQDTFGRFGGEEFALLLPCTSLDEAMLVAEKIRQTIGSTPIE-A 262

Query: 212 SGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCF 258
            G  + +T S G A          T++  AD ALY AK+ GRN  V F
Sbjct: 263 EGVRVPVTASVGGAAAHAGALTHETLVNEADAALYRAKRQGRNCSVAF 310


>gi|188581672|ref|YP_001925117.1| diguanylate cyclase [Methylobacterium populi BJ001]
 gi|179345170|gb|ACB80582.1| diguanylate cyclase [Methylobacterium populi BJ001]
          Length = 532

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 94/200 (47%), Gaps = 18/200 (9%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRI---DCLSGLLNHSAF------- 118
           L L  ++I +SLL G       +EL  S +  ++L+R+   D L+GL N   F       
Sbjct: 314 LVLCGLTILLSLLFG-------RELRRSADMQAELARLAGTDLLTGLPNRRRFEEAFEQA 366

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGG 177
             +    +  L+++  D D+FK+ ND  GH VGD V+  L+  L      P     R+GG
Sbjct: 367 AKASRRADRPLALLVIDADHFKRYNDRHGHAVGDAVLKSLAKSLTESLRRPNDLAARVGG 426

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EEFA     +    AA +A  +   +    +  +      IT+S G+A          + 
Sbjct: 427 EEFAVLLPDTDRAGAARIAEAIHAAVAGLAVPAAGIDPGSITVSIGLAVSAGDRATEDLY 486

Query: 238 YRADQALYVAKKSGRNRVVC 257
            RAD ALYVAK+SGRNR  C
Sbjct: 487 RRADAALYVAKESGRNRTCC 506


>gi|157160966|ref|YP_001458284.1| diguanylate cyclase [Escherichia coli HS]
 gi|157066646|gb|ABV05901.1| diguanylate cyclase [Escherichia coli HS]
          Length = 460

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454

Query: 257 CFS 259
            + 
Sbjct: 455 LWK 457


>gi|146312192|ref|YP_001177266.1| diguanylate cyclase [Enterobacter sp. 638]
 gi|145319068|gb|ABP61215.1| diguanylate cyclase [Enterobacter sp. 638]
          Length = 564

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 16/194 (8%)

Query: 77  TISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128
           T +LL+ ++    ++  +F   N +   +  D L+ L N  A      +  E+       
Sbjct: 368 TATLLISWLVIRRMVSNMFTLQNSLQWQAWHDPLTRLNNRRALFDRAQALAEECRQQQLP 427

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            S++  D+D+FK IND FGH  GDKV++  +  +     +    GR+GGEEF     G++
Sbjct: 428 FSVIQLDLDHFKSINDRFGHQAGDKVLSHTARLITHALRSSDVAGRVGGEEFCVVLPGAT 487

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-----EPISTIIYRADQA 243
            ++AA +A  +R  I   +I +    +  ++ S G++          E + +I   AD  
Sbjct: 488 AEQAAGVAERIRVSINRKEILVKKSTTARVSASLGVSSTEENANFDFEQLQSI---ADAR 544

Query: 244 LYVAKKSGRNRVVC 257
           LY+AK+ GRN+VVC
Sbjct: 545 LYLAKQQGRNQVVC 558


>gi|221066878|ref|ZP_03542983.1| diguanylate cyclase [Comamonas testosteroni KF-1]
 gi|220711901|gb|EED67269.1| diguanylate cyclase [Comamonas testosteroni KF-1]
          Length = 264

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 86/172 (50%), Gaps = 10/172 (5%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+GL N   F       I  +    E   ++  DID+FKQIND  GH  GD V+
Sbjct: 53  LSLRDPLTGLANRRHFRSVIEREIDRVARSGETALLLMLDIDHFKQINDEHGHIAGDMVL 112

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L  +      + R GGEEFA         +   +A  LR+ IE++ I +SSG  
Sbjct: 113 QSVAQTLSEIIRPMDTLARFGGEEFAIVLPVCPAHQGRAVAERLRQAIEDNSIAVSSGQM 172

Query: 216 IHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           + +T+S G   A++  +        RAD+ LY+AK +GRN  VC  +  ++T
Sbjct: 173 LKVTVSIGGVYAQQWIRSTAQLWTERADRQLYLAKSAGRN-CVCVEEPPDST 223


>gi|16804213|ref|NP_465698.1| hypothetical protein lmo2174 [Listeria monocytogenes EGD-e]
 gi|47095748|ref|ZP_00233354.1| GGDEF domain protein [Listeria monocytogenes str. 1/2a F6854]
 gi|224500161|ref|ZP_03668510.1| hypothetical protein LmonF1_10959 [Listeria monocytogenes Finland
           1988]
 gi|224501027|ref|ZP_03669334.1| hypothetical protein LmonFR_00660 [Listeria monocytogenes FSL
           R2-561]
 gi|254831389|ref|ZP_05236044.1| hypothetical protein Lmon1_08522 [Listeria monocytogenes 10403S]
 gi|254899125|ref|ZP_05259049.1| hypothetical protein LmonJ_04914 [Listeria monocytogenes J0161]
 gi|254912734|ref|ZP_05262746.1| GGDEF domain-containing protein [Listeria monocytogenes J2818]
 gi|254937061|ref|ZP_05268758.1| GGDEF domain-containing protein [Listeria monocytogenes F6900]
 gi|284802621|ref|YP_003414486.1| hypothetical protein LM5578_2377 [Listeria monocytogenes 08-5578]
 gi|284995763|ref|YP_003417531.1| hypothetical protein LM5923_2328 [Listeria monocytogenes 08-5923]
 gi|16411644|emb|CAD00252.1| lmo2174 [Listeria monocytogenes EGD-e]
 gi|47015891|gb|EAL06818.1| GGDEF domain protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258609664|gb|EEW22272.1| GGDEF domain-containing protein [Listeria monocytogenes F6900]
 gi|284058183|gb|ADB69124.1| hypothetical protein LM5578_2377 [Listeria monocytogenes 08-5578]
 gi|284061230|gb|ADB72169.1| hypothetical protein LM5923_2328 [Listeria monocytogenes 08-5923]
 gi|293590729|gb|EFF99063.1| GGDEF domain-containing protein [Listeria monocytogenes J2818]
          Length = 357

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 103/199 (51%), Gaps = 21/199 (10%)

Query: 76  ITISLLLGYISGSIL------KELFISYNRISQLSRIDCLSGLLNHSAFISS-LGSYNEK 128
           + I+L++G +S  ++      K+LF  Y + S L  +  LS +      I+  + + + +
Sbjct: 164 VLIALVIGAVSAGLMSNMIKSKQLFQKYEQDSTLDYLTKLSNVRQFDEKINHVMDAGSRQ 223

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF------GTPMFVGRLGGEEFAA 182
           ++++  DIDYFK IND +GH  GD ++     QL ++       G+  F  R GGEEF+ 
Sbjct: 224 VTLMLIDIDYFKNINDTYGHDAGDAIL----KQLAIILKRNTSDGSEAF--RNGGEEFSI 277

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-AD 241
             L    ++    A  +R+  E     I SG  + ITIS G++        S  +++ AD
Sbjct: 278 VLLDCPIEKGNFFAEQVRRETEEYDFMIPSGQVVKITISVGVSSSKDGANTSEGLFKSAD 337

Query: 242 QALYVAKKSGRNRVVCFSD 260
           +ALY AK +GRN+ VC +D
Sbjct: 338 EALYKAKLTGRNQ-VCIAD 355


>gi|323492736|ref|ZP_08097880.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
 gi|323313111|gb|EGA66231.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
          Length = 348

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 103/200 (51%), Gaps = 16/200 (8%)

Query: 65  LVENLSLVIISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           LV N SLV ++I       +++  +L+ +  +S   + QL+  D L+G+ N  A   +  
Sbjct: 146 LVINFSLVFMTI-------WVTAHVLEVKRRVSEASLGQLASRDALTGVYNRHALSHNFE 198

Query: 124 SYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
            Y ++     +S++  D+D+FK +ND +GH VGD V++  +  L+        V R+GGE
Sbjct: 199 RYRQESSKLAMSLLILDLDFFKSVNDRYGHDVGDTVLS-QTAALLDSLSDEHLVYRIGGE 257

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EF  A   +    A + A  +R  IE    N    P I +T S G+        + +++ 
Sbjct: 258 EFCVALHDTGLDAAKLKAEQIRNSIEQYCFNSPEEP-IALTASIGVYLCNQYANLESVLR 316

Query: 239 RADQALYVAKKSGRNRV-VC 257
            AD+ LY AK++GRN+V VC
Sbjct: 317 EADKELYHAKQNGRNQVKVC 336


>gi|320184820|gb|EFW59611.1| Putative Heme-regulated two-component response regulator [Shigella
           flexneri CDC 796-83]
          Length = 195

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 16  TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 69

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 70  DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 129

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 130 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 189

Query: 257 CFS 259
            + 
Sbjct: 190 LWK 192


>gi|260362059|ref|ZP_05775055.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
 gi|260902869|ref|ZP_05911264.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|308094488|ref|ZP_05889717.2| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|308095559|ref|ZP_05906895.2| GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|308085029|gb|EFO34724.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|308090635|gb|EFO40330.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|308107811|gb|EFO45351.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|308113814|gb|EFO51354.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
          Length = 454

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 95/167 (56%), Gaps = 7/167 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           K+L ++  ++ +L+  D L+ L N    I   ++L S  + ++++ FDID FK IND +G
Sbjct: 271 KQLTLANQQLLELTLTDPLTKLYNRRHLIERLATLSSLQKNVTVMVFDIDDFKSINDKYG 330

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD+ I  ++D    +    + + R+GGEEFA      SE+EA  LA  +   + +  
Sbjct: 331 HLIGDQAIVAVADTAKSLTDERITLARIGGEEFALVTASLSEKEAETLAKAICSCVYDRP 390

Query: 208 INISSGPSIHITISAGIAERCHKEPISTI-IYRADQALYVAKKSGRN 253
           + + +G +IH+++S G A   ++E    I ++ ADQ +Y  K +G+N
Sbjct: 391 V-LLNGQAIHVSVSLGCA--YYREFKGIINLHEADQLMYCGKMNGKN 434


>gi|260575447|ref|ZP_05843446.1| response regulator receiver modulated diguanylate cyclase
           [Rhodobacter sp. SW2]
 gi|259022367|gb|EEW25664.1| response regulator receiver modulated diguanylate cyclase
           [Rhodobacter sp. SW2]
          Length = 458

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 88/164 (53%), Gaps = 11/164 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+ ID L+GL N    +  L +  E+        +++  D+D FK +ND++GH  GD V
Sbjct: 289 RLAVIDPLTGLYNRRYALPQLAAIAERAQEAGQGFAVMVIDLDRFKAVNDHWGHAAGDAV 348

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++++L         + R+GGEEF      S   +A   A  L  +++   I +  G 
Sbjct: 349 LVEVAERLTENLRKTDLLARIGGEEFLVVLPDSDLTDARATAERLCAVMQERPIQVQGG- 407

Query: 215 SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S+ +T+S G+A        EP++ I+ RAD+AL +AK +GRN+V
Sbjct: 408 SLSVTVSIGLAISNPARQVEPVADIVDRADRALMLAKANGRNKV 451


>gi|163748992|ref|ZP_02156243.1| sensory box/GGDEF domain protein [Shewanella benthica KT99]
 gi|161331368|gb|EDQ02256.1| sensory box/GGDEF domain protein [Shewanella benthica KT99]
          Length = 310

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 7/156 (4%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N + F S L         +     ++  D+D FK +ND++GH +GDKV+   S
Sbjct: 153 DNLTGLYNRNYFNSKLKDIYHQYKRFGHSFCVLMLDLDRFKMVNDSYGHLIGDKVLQEFS 212

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            ++  V      + R GGEEF      +  + A  +A+ +RK +   ++   +   +  T
Sbjct: 213 KKVQQVLREVDLLARFGGEEFIVLLPNTKLEAAKDVADRIRKRVSKQRVLSQNHEPVTFT 272

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S G+AE    +   +II  AD+ALY AK +GRNRV
Sbjct: 273 VSIGVAEIGTDDEKESIIKLADEALYRAKNNGRNRV 308


>gi|144898150|emb|CAM75014.1| GGDEF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 470

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 11/157 (7%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N ++    +         YN   ++V  D+D+FK++ND  GH  GD V+   +
Sbjct: 313 DSLTALPNRASLNERMAKEADRFRRYNRPFAVVLLDLDHFKRVNDELGHLTGDTVLVKFA 372

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
              + V  T   VGR GGEEF      ++ ++A ++   L + +      +        T
Sbjct: 373 TLALQVARTQDLVGRWGGEEFLILCSETTAEQAQVMTERLCRSVRECDFGLGR----RQT 428

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ISAGIA     E I  +++RAD ALY AK +GR++VV
Sbjct: 429 ISAGIAAMRAGETIDVLLHRADLALYAAKNNGRDQVV 465


>gi|88797066|ref|ZP_01112656.1| Bacteriophytochrome (light-regulated signal transduction histidine
           kinase) [Reinekea sp. MED297]
 gi|88779935|gb|EAR11120.1| Bacteriophytochrome (light-regulated signal transduction histidine
           kinase) [Reinekea sp. MED297]
          Length = 324

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 8/164 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+ LLN  A ++ L         Y +  S++  D+DYFK IND +GHP+GD
Sbjct: 158 LEKLAVTDELTDLLNRRAVMARLTGQLQLARRYGKPFSLMMCDLDYFKSINDTYGHPIGD 217

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQINIS 211
           +V+   +D L         VGR+GGEEF      +   EA  +A  L  +  ++  ++  
Sbjct: 218 EVLTVFADHLKQATREVDSVGRVGGEEFLILFPETPLAEAITVAERLCERCRDDRTVSAY 277

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G  I  + S G+ +    +   T++ R D ALY AK SGR+ V
Sbjct: 278 DGTVITFSCSIGVVQCNADDSEKTLLNRVDVALYDAKASGRDTV 321


>gi|148253787|ref|YP_001238372.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1]
 gi|146405960|gb|ABQ34466.1| Putative diguanylate cyclase (GGDEF) with GAF and HAMP domains
           [Bradyrhizobium sp. BTAi1]
          Length = 646

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 78/159 (49%), Gaps = 12/159 (7%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N    I +              +S+V  DID+FK  NDN GH  GD V+  + 
Sbjct: 444 DALTGLNNRRYLIETARRELLRAARSRTPVSVVTLDIDHFKSFNDNHGHEAGDTVLRHIG 503

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L   F       RLGGEEF       + +EAA+ A +LR  +E   I+   G    +T
Sbjct: 504 EILKATFADGEMPCRLGGEEFVVLLPNCTIEEAALRAEELRARVEALNISYGDGMLPRVT 563

Query: 220 ISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRV 255
           IS G+A   + E    +  I+  AD ALY AK+ GRNRV
Sbjct: 564 ISVGVA--AYPEAGIDLPEILRVADGALYRAKQRGRNRV 600


>gi|319786618|ref|YP_004146093.1| diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1]
 gi|317465130|gb|ADV26862.1| diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1]
          Length = 478

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 88/160 (55%), Gaps = 11/160 (6%)

Query: 107 DCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+ LLN   F+ ++         S   + +++  D+D+FK IND  GH  GD+ +  +
Sbjct: 305 DALTRLLNRR-FLPTILRREVALQASTGRQFAVLMLDLDHFKAINDGHGHEAGDRALQHV 363

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIH 217
           +  LV       ++ R GGEEF A  LGS S+ EA  +A+ LR+ I  + + +S G  + 
Sbjct: 364 AAILVENTRGSDYLFRYGGEEFVAV-LGSVSQTEAVAIAHALRRAISGAPLALSDGTRLQ 422

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++ S G+A +        ++ RAD A+Y AK++GR+RVV 
Sbjct: 423 LSASIGVAVQDGHPDYERVLARADAAMYQAKRAGRDRVVV 462


>gi|296273696|ref|YP_003656327.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
 gi|296097870|gb|ADG93820.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
          Length = 518

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 102/204 (50%), Gaps = 12/204 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121
           ++L I+ ITI     +I  +   EL  +Y  + QLS ID L+ L N   +       I +
Sbjct: 308 ITLFILLITIWYYFKHIRKT-ESELNYAYKYVQQLSAIDGLTKLYNKQYYLDNVLKLIQN 366

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEF 180
              +N  +S +  D+D FK+ NDN+GH  GD V+  +S  +   F     +  R+GGEEF
Sbjct: 367 FSRFNSYVSFILIDVDNFKKYNDNYGHLKGDDVLIQVSKIIKNNFKRDTEYCFRVGGEEF 426

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAER--CHKEPISTII 237
              +    E+    +A+ L K I++  +      +   IT+S G+  +   +   I  + 
Sbjct: 427 LIVSASKDEENGNKMADALCKKIQDKNLEHKFNENFGVITVSIGLVTKHISYDIKIDELY 486

Query: 238 YRADQALYVAKKSGRNRVVCFSDI 261
             AD+ALY +K+SGRN+V  F +I
Sbjct: 487 NNADKALYQSKQSGRNKVTVFKEI 510


>gi|253687377|ref|YP_003016567.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251753955|gb|ACT12031.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 235

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 81/151 (53%), Gaps = 4/151 (2%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+ + N  A I  +    E+   +++  DID+FK +ND +GHP GD VI  L  ++  
Sbjct: 84  DPLTSVYNRGAIIERINHALERNQAALIVLDIDHFKLVNDTYGHPTGDAVICDLVSRVQN 143

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           V  T   +GR+GGEEF     G +  +A  LA+ L + +  +++ +S  P   +T S G+
Sbjct: 144 VLNTTSSIGRVGGEEFTILLEGHTLMQAVSLASRLHQDL--NRMPLSVLPQQRVTASFGV 201

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +    K     +   AD ALY AK+ GRNRV
Sbjct: 202 SWAPQKTRFDALYSAADAALYQAKEKGRNRV 232


>gi|37679909|ref|NP_934518.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37198655|dbj|BAC94489.1| GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 320

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 92/183 (50%), Gaps = 20/183 (10%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDY 138
           S + LKE   + + +S++SR D L+GL N + +  SL     ++       S+V FDID+
Sbjct: 142 SKTHLKE---TNHHLSEISRRDGLTGLFNRAFWEQSLKEEFSRMQFLDTPSSLVIFDIDH 198

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++ND +GH  GD+VI   +  L          GR GGEEF      +S  +A   +  
Sbjct: 199 FKKVNDTYGHHAGDEVIRRTASLLKKTARNSDLCGRFGGEEFTVLLPHTSADQARYFSER 258

Query: 199 LRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRN 253
           LRK IE   + +    +I+ TIS G+ E       H E +      AD ALY +K+ GRN
Sbjct: 259 LRKRIEQEIVCVEKF-AINYTISLGVCEFDAKFTSHTEWLKA----ADSALYHSKEGGRN 313

Query: 254 RVV 256
           +  
Sbjct: 314 QTT 316


>gi|95928597|ref|ZP_01311344.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95135387|gb|EAT17039.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 418

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 102/211 (48%), Gaps = 29/211 (13%)

Query: 69  LSLVIISITI-SLLLGYISGSILKELFISYNRISQL-------SRIDCLSGLLNH----- 115
           LS VI ++ I  ++  YI    LK+    Y ++ QL       S  D L+ L N      
Sbjct: 206 LSFVIFTLAILPIIYAYIQA--LKQKNREYQQVHQLYLDQSKRSITDPLTRLYNRFKLDE 263

Query: 116 ---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
              +AF S   +YN   +++  D+DYFK IND +GH VGD V+  ++  L     +   V
Sbjct: 264 ELETAF-SLFQNYNRTFALIMTDLDYFKAINDRYGHQVGDTVLQSIATLLKESSRSADVV 322

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH---ITISAGIAERCH 229
           GR GGEEF      +    A  LA  LR         I+S    H   +T S G+AE   
Sbjct: 323 GRWGGEEFMIICRDADSNGAFHLAEKLR-------TEIASYARKHEYSLTASFGVAEPQT 375

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++ +  ++   D+ALY AK++GRN+ V  SD
Sbjct: 376 QQSLPQLLQSVDEALYAAKRAGRNQTVKASD 406


>gi|295397435|ref|ZP_06807522.1| GGDEF domain protein [Aerococcus viridans ATCC 11563]
 gi|294974336|gb|EFG50076.1| GGDEF domain protein [Aerococcus viridans ATCC 11563]
          Length = 353

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 9/173 (5%)

Query: 93  LFISYNRISQLSRI------DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +++SY   + L ++      D L+ L N       +  +   N+  S++  DID FK++N
Sbjct: 172 IYVSYQFTNDLDKLYQSSVHDSLTALYNARKLEEDLRKISENNDSYSLLVLDIDNFKKLN 231

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGDK +  +   L  +        R GGEEF +     + Q+   LA  + + I
Sbjct: 232 DTYGHLVGDKALEEIGTVLNNLKSDLFDCYRYGGEEFVSLVFDCTGQKTLDLAESIHERI 291

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               +    G  + IT+S G+A R   E + + + RADQALY AK  G+N++V
Sbjct: 292 AEMPLFSEEGEPLKITVSIGVAHRNPHEDMKSTLLRADQALYQAKHRGKNQMV 344


>gi|269960938|ref|ZP_06175308.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834378|gb|EEZ88467.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 626

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 87/176 (49%), Gaps = 23/176 (13%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDIDYFKQINDNFGHP 149
           ++  LS  D L+ L N   F   L  Y   +          +  FDID+FK+IND  GH 
Sbjct: 460 KLRNLSEKDGLTSLWNRRKFEEQLAQYANMVERYPDTPTTCLALFDIDHFKRINDEMGHD 519

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GDKVI  +++ L        FV R+GGEEFA     ++ QEA ++ N LR  +E   +N
Sbjct: 520 EGDKVICGVANTLSNGVRNTDFVARVGGEEFAVIMPHTTTQEAEVVLNRLRVAVE---LN 576

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VC--FSDI 261
                ++ +  S    +R       T  Y+ AD ALY +K +GRNRV +C  F DI
Sbjct: 577 SEKAVTVSVGYSDLTGDR-------TRSYKCADIALYESKSAGRNRVSICHSFDDI 625


>gi|261250126|ref|ZP_05942702.1| GGDEF domain protein [Vibrio orientalis CIP 102891]
 gi|260939242|gb|EEX95228.1| GGDEF domain protein [Vibrio orientalis CIP 102891]
          Length = 474

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 15/171 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +++ +L+  D L+G  N  +F       IS+   +   L+++  DID+FKQ+ND +GH  
Sbjct: 305 HKLRELAATDALTGAFNRRSFYEQTERAISTCSRWKAPLTVILLDIDHFKQVNDQYGHAA 364

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-- 208
           GD+V+  L   +         VGRLGGEEF      +       +A  LR+ +E  +I  
Sbjct: 365 GDEVLIALVKHIQQSTRNMDVVGRLGGEEFGLVLPNTDSVLGFEIAERLRQEVEAMEIYY 424

Query: 209 NISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVV 256
           +I    ++ IT+S G+A   H +   P   ++ R D  LY AK  GRN +V
Sbjct: 425 DIQ---ALKITVSLGMATLPHTQLSTPFDEVLARVDSYLYEAKHQGRNCIV 472


>gi|229526647|ref|ZP_04416051.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|229336805|gb|EEO01823.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
          Length = 326

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 92/183 (50%), Gaps = 15/183 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLN---------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142
           +++ +Y  I   S  D L+GLLN         H+  I+     + KL I   DID+FK I
Sbjct: 132 KIYRNYTVILHESERDKLTGLLNRRTLEDRLRHTFAINPSIEEHHKLWIAMLDIDHFKAI 191

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+FGH +GD+++   + Q+   FG    + R GGEEF       +E +     +  R+ 
Sbjct: 192 NDHFGHMIGDEILLMFAQQMQHYFGPSSQLFRFGGEEFVIIFSSGNEPQIKQQLDGFRQ- 250

Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
               QI   + P I  ++ SAG       + + TI+  AD+ALY AK+ GRN+V C+  +
Sbjct: 251 ----QIRRHNFPRIGELSFSAGFCSLRPGDYLPTILDHADKALYYAKEHGRNQVHCYEQL 306

Query: 262 ENN 264
             N
Sbjct: 307 CEN 309


>gi|190893956|ref|YP_001980498.1| sensory box GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190699235|gb|ACE93320.1| putative sensory box GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 539

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 87/164 (53%), Gaps = 10/164 (6%)

Query: 104 SRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           ++ D L+GL N        SA ++     +  +S+V FD+D+FK+IND  GH  GD V+ 
Sbjct: 351 AQTDLLTGLYNRRGFEVAASALLTQAEHGSRWISVVLFDLDHFKKINDLNGHDAGDAVLR 410

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++      F +   + R GGEEF A    S+   AA++A  +R  IE ++I + SG  +
Sbjct: 411 HVAGVARENFRSFDLLVRHGGEEFLALLPDSTPDGAAVVAERVRLAIEMAEIALPSGERL 470

Query: 217 HITISAGIAERCHK---EPISTIIYRADQALYVAKKSGRNRVVC 257
            +T S G A R +         ++ RAD ALY AK SGRN VV 
Sbjct: 471 KVTASFGCAGRANDGASRNFEDLVKRADLALYAAKASGRNCVVS 514


>gi|66043536|ref|YP_233377.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63254243|gb|AAY35339.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 690

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIV--FFDIDYFKQINDNFGHPVGDKV 154
           Q + ID L+GL N +A+   L       + EK S++    D+D+FK+IND +GH  GDKV
Sbjct: 528 QKALIDPLTGLPNRAAWGERLEREMARWHEEKNSLLVCILDLDHFKRINDGYGHLAGDKV 587

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +++ L        F+ R GGEEF      +       L ++LR  +E+   +   G 
Sbjct: 588 LKIVANVLSKRLRADDFMARFGGEEFVMLLPATPPATGLKLLDELRAAVESCPFHF-KGE 646

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT+S G+      E   T I RADQALY AK++GRNR+
Sbjct: 647 RVTITVSIGMTAFRPSERSDTAIKRADQALYKAKENGRNRI 687


>gi|83310899|ref|YP_421163.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945740|dbj|BAE50604.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Magnetospirillum magneticum AMB-1]
          Length = 622

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 85/172 (49%), Gaps = 27/172 (15%)

Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           QL+  D L+   N   F+ S        G Y   LS++  D+D+FK+IND  GH  GD+ 
Sbjct: 456 QLATTDFLTDACNRRHFMQSTVAEIQRAGRYGRPLSLLMIDLDHFKRINDERGHAAGDEA 515

Query: 155 IA--------FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           +          L DQ +        +GR+GGEEFA A   ++   A ++A  LR  +   
Sbjct: 516 LKAFVVMARDLLRDQDI--------IGRMGGEEFAIALPETALNPALVVAERLRIRLAGL 567

Query: 207 QINISSGPSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRV 255
           Q+ +  G  I ++ S G+AE C     E +   + RAD ALY AK  GRNRV
Sbjct: 568 QVPVGGGEPIILSASFGVAE-CRVGAGEGLEACLGRADAALYRAKAMGRNRV 618


>gi|229153576|ref|ZP_04281754.1| GGDEF domain protein [Bacillus cereus m1550]
 gi|228630180|gb|EEK86831.1| GGDEF domain protein [Bacillus cereus m1550]
          Length = 352

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 102/208 (49%), Gaps = 18/208 (8%)

Query: 65  LVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHSAF 118
           L++ + +V + +  S++ GYI+      +L+  ELF    R+ Q + ID L+GL N   F
Sbjct: 150 LIKEIHIVGLYLISSIITGYITFISANYVLQSNELF---QRMKQYATIDALTGLGNVRQF 206

Query: 119 -------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  IS+    N+   ++  DID+FK +ND +GHP GD+V+  +   L      P  
Sbjct: 207 DLEMNRHISNKNMKNDSFCLLLIDIDHFKYVNDTYGHPAGDEVLKQVGCILRETSQFPDL 266

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
             R GGEEFA            +    +R  +E+    +     I IT+S G++E  ++ 
Sbjct: 267 AFRKGGEEFALLIPNKGLAYGILTGEQIRTAVESHSFQLLDETKIKITVSVGVSE--YEG 324

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
                I  AD ALY +K++GRN+V   S
Sbjct: 325 SPEQFIQAADDALYYSKRNGRNKVSSVS 352


>gi|295699215|ref|YP_003607108.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1002]
 gi|295438428|gb|ADG17597.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1002]
          Length = 771

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 94/177 (53%), Gaps = 30/177 (16%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQINDNFG 147
           F+  ++++QL+  D L+GL N  +F+       E L      S +F DID FK +ND FG
Sbjct: 189 FLLESQLAQLAATDPLTGLQNRRSFVKHAEGRLETLAPGAQISAIFLDIDSFKSLNDRFG 248

Query: 148 HPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR--- 200
           H VGD    +V   L D  V ++ +   V R+GGEEFA            ++  DL    
Sbjct: 249 HAVGDLALFQVAQVLKDA-VALYDS---VSRIGGEEFAL-----------LIDEDLTGAL 293

Query: 201 KIIENSQINISS--GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++ E  +++I++   P  H+T S G+AE    E    ++ RAD+AL  AK++GRNRV
Sbjct: 294 QLAERLRLDIAAIERPDGHLTASFGVAEHRRGESFMVLLDRADEALLRAKQTGRNRV 350


>gi|323164464|gb|EFZ50266.1| diguanylate cyclase domain protein [Shigella sonnei 53G]
          Length = 313

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 134 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 187

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 188 DKFKEINDTWGHNTGDEILRKVSQAFYDNVHSSDYVFRYGGDEFIIVLTEASENETLRTA 247

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 248 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 307

Query: 257 CFS 259
            + 
Sbjct: 308 LWK 310


>gi|146305506|ref|YP_001185971.1| diguanylate cyclase [Pseudomonas mendocina ymp]
 gi|145573707|gb|ABP83239.1| periplasmic/7TM domain sensor diguanylate cyclase [Pseudomonas
           mendocina ymp]
          Length = 601

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 10/171 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L ++  R+S+L+  D L+GL N +A        I+     NE L+++  D+D FK +ND 
Sbjct: 426 LELANQRLSELALQDPLTGLANRTALQQHLEQAIARSQRRNELLAVMLIDLDGFKPVNDQ 485

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD+V+A ++ +L           RLGG+EF    +  + Q AA   +  ++++E 
Sbjct: 486 YGHGFGDQVLAEVARRLRHYLRDADLPARLGGDEF--VVICENVQTAADARDLAKRVLEG 543

Query: 206 SQINIS-SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               I   G ++ +  S GIA    ++  + +I RAD A+Y AK +GRNRV
Sbjct: 544 LDTPIYLEGRAVRVGASIGIALYHGEDDATALIRRADAAMYRAKATGRNRV 594


>gi|15605806|ref|NP_213183.1| hypothetical protein aq_265 [Aquifex aeolicus VF5]
 gi|2982975|gb|AAC06589.1| hypothetical protein aq_265 [Aquifex aeolicus VF5]
          Length = 338

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 86/166 (51%), Gaps = 12/166 (7%)

Query: 101 SQLSRIDCLSGLLNHSAF------ISSLGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDK 153
           S+  ++D L+GLLN          +  L  Y E   SI   DID FK+IND +GH  GDK
Sbjct: 174 SKALKVDPLTGLLNRRVLPYILRDVLELSLYTETPFSIAMVDIDNFKKINDTYGHLFGDK 233

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  ++  +        +V R GGEEF      +  ++A  +   +RK +EN+ I    G
Sbjct: 234 VLKEVAKIIKKNLRRSDYVFRYGGEEFLILMPSTELKDAVRILEKIRKEVENTPI-CWQG 292

Query: 214 PSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRVV 256
             I +TIS G+    +   K P    I  AD+ LY+AK++G+NRVV
Sbjct: 293 KEIRVTISVGVCSDVYNGLKSP-EEYIKCADEKLYLAKRTGKNRVV 337


>gi|89074248|ref|ZP_01160738.1| hypothetical sensory box/GGDEF family protein [Photobacterium sp.
           SKA34]
 gi|89049952|gb|EAR55486.1| hypothetical sensory box/GGDEF family protein [Photobacterium sp.
           SKA34]
          Length = 339

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 15/172 (8%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148
           S  +++ LS  D L+ L N   + + L          ++ +++V FDID+FK++ND +GH
Sbjct: 146 SNEQLTHLSITDRLTQLYNRGHWENCLVEEFEHYQQMHQPMTLVMFDIDHFKKVNDTYGH 205

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD VI  ++D +          GR GGEEF     G++    +     LRK +E   +
Sbjct: 206 VAGDTVIKTMADIVRKAKRQSDIAGRYGGEEFGVILPGTTADMTSYFTERLRKKVEKENV 265

Query: 209 NISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVV 256
            +  G +I++TIS G+   C   P      + I + D ALY +K  GRN+  
Sbjct: 266 -VVDGKTINVTISLGV---CQLHPGITSYESWIEQTDSALYESKNKGRNQTT 313


>gi|294140989|ref|YP_003556967.1| sensory box/GGDEF family protein [Shewanella violacea DSS12]
 gi|293327458|dbj|BAJ02189.1| sensory box/GGDEF family protein [Shewanella violacea DSS12]
          Length = 306

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 12/168 (7%)

Query: 100 ISQLSRIDCLSGLLNHSA---------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +++ +  D L+GL N             I+S G  N   +++  D+D+FKQ+ND  GH V
Sbjct: 142 LTKQASFDDLTGLFNRREGLKQGEVMHKIASRGEGN--FAVLMLDLDHFKQVNDKHGHLV 199

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+ + F+S  L         + R GGEEF     GSSE  A  LA   R  + N+ + +
Sbjct: 200 GDRALQFVSKILTDNSRMSDVLIRYGGEEFMIIISGSSEDGAGALAEYYRASLANNPMIL 259

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             G  + +T+S G++   H + +  +I+ AD ALY AK+S RN V  F
Sbjct: 260 DDGTELRLTVSIGLSYFRH-QSLGQLIHEADTALYEAKRSNRNTVCSF 306


>gi|187477686|ref|YP_785710.1| signaling protein [Bordetella avium 197N]
 gi|115422272|emb|CAJ48796.1| putative signaling protein [Bordetella avium 197N]
          Length = 513

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 85/162 (52%), Gaps = 12/162 (7%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL N   +   I++  SY+  ++I+  DID+FK++ND +GH VGD+V+  LS+ + 
Sbjct: 358 DALTGLANRRVYEICINTWESYHRSVAIIAIDIDHFKKVNDTYGHAVGDEVLKKLSEIMS 417

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   V R+GGEEF   A   S   A  +A  +R  +     N       +ITIS G
Sbjct: 418 SCARAADVVCRIGGEEFLILAPAMSRDSAKEMAERIRVQVSEYDFNTVG----NITISLG 473

Query: 224 IA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +A     C K  +S +   AD  LY AK +GRNRV    ++E
Sbjct: 474 VAVWPYDCSK--LSQLSKMADDMLYQAKANGRNRVETADELE 513


>gi|108761071|ref|YP_633928.1| response regulator/GGDEF domain-containing protein [Myxococcus
           xanthus DK 1622]
 gi|108464951|gb|ABF90136.1| response regulator/GGDEF domain protein [Myxococcus xanthus DK
           1622]
          Length = 347

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 86/178 (48%), Gaps = 13/178 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           KEL      +  L+R D L+GL N  AF   L         Y   LS+V  DID+FK+IN
Sbjct: 165 KELAARREELLALTRTDALTGLSNRRAFEERLNDEFARSRRYGAPLSLVMLDIDHFKRIN 224

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+FGHP GD V+  ++            + R GGEEF A    +   +A  +   +R  I
Sbjct: 225 DSFGHPFGDHVLKAVAQTARARLREVDLLARYGGEEFIALLPETGPADALRVCERVRDAI 284

Query: 204 ---ENSQINISSGPS-IHITISAGIAERCHKE-PISTIIYR-ADQALYVAKKSGRNRV 255
              E   +  S  P  + +T S G+A     + P +  + R AD +LY AK +GRNRV
Sbjct: 285 AALELEHVGGSGKPQCVRLTASLGVATVPSGDLPSAEALLRAADASLYAAKGAGRNRV 342


>gi|307721789|ref|YP_003892929.1| response regulator receiver modulated diguanylate cyclase
           [Sulfurimonas autotrophica DSM 16294]
 gi|306979882|gb|ADN09917.1| response regulator receiver modulated diguanylate cyclase
           [Sulfurimonas autotrophica DSM 16294]
          Length = 427

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 11/165 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            I++ +  D L+GL N + F       +S +  Y   LS+   DID+FK  ND +GH +G
Sbjct: 264 EITKKANHDMLTGLYNRNKFEEVFEYELSQVKRYGYDLSLAIADIDHFKFFNDTYGHLIG 323

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  +++ L     +   + R GGEEF      +S  +A +L    RK++E     ++
Sbjct: 324 DEVLKLVANSLTSCTRSSDTLARWGGEEFVMLFSQTSFDDALVLLEKCRKLVE----GLN 379

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                 IT+S G+      + + +++ RAD+ALY AK +GRN+V+
Sbjct: 380 YKEYGKITLSFGVTSYKEGDTLDSMLQRADEALYEAKANGRNKVI 424


>gi|262372117|ref|ZP_06065396.1| WspR [Acinetobacter junii SH205]
 gi|262312142|gb|EEY93227.1| WspR [Acinetobacter junii SH205]
          Length = 420

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 87/164 (53%), Gaps = 10/164 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            LS+ D L+ + N   F      Y       N+ +S++F DIDYFK  ND +GH +GD+V
Sbjct: 248 HLSQHDELTKVSNRRTFEEMFSYYYDMACKENKSMSVLFIDIDYFKNYNDFYGHQMGDQV 307

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSG 213
           I+ ++  +        F+ R GGEEF      +S Q A  +A ++ K I+   I +  S 
Sbjct: 308 ISSIAKTIKSSIRHMDFIARYGGEEFVVLLPETSAQGAYAVATNIYKAIDRQMIPHEKSL 367

Query: 214 PSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255
            S H+TIS GI        IS   +I+ AD+ALY AK+ GRN++
Sbjct: 368 VSNHVTISLGITVFNGNPKISQELLIHTADKALYRAKQLGRNQI 411


>gi|145299969|ref|YP_001142810.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852741|gb|ABO91062.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 320

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 4/170 (2%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNF 146
           + +L      +S+LS  D L+ L N       L ++      LS++  D+D+FKQ+ND +
Sbjct: 148 IHDLHCMIEEVSRLSCTDPLTELSNRRGAEQQLQAHWLQGRPLSVILCDVDHFKQVNDRY 207

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GHP GD  +  ++  +         + R GGEEF     G+        A  LR+++  S
Sbjct: 208 GHPAGDAALCGVARIMEEQLQEKECLARWGGEEFLLILPGADAARVVSRAEQLRQLLSAS 267

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           QIN        +T+S G A     + +  ++  AD+ALY AK  GRNRV+
Sbjct: 268 QINWHHH-HFSLTMSFGCATLTTGQSLDNLLLVADRALYQAKAQGRNRVL 316


>gi|116253890|ref|YP_769728.1| GGDEF domain-containing regulatory protein [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115258538|emb|CAK09642.1| putative transmembrane sensory box GGDEF domain protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 385

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 90/171 (52%), Gaps = 11/171 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           S N++++L+  D L+G LN       + +LGS  +  S++  DID+FKQ+ND  GH  GD
Sbjct: 215 SRNQLTELAHHDPLTGALNRGGLAQHLPALGS--QPASLLIIDIDHFKQLNDRHGHAAGD 272

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++   +     +  +   + R GG+EF A     S ++A  +A  +R     +   +  
Sbjct: 273 DILRLFASVSRGIMRSDDLLARQGGDEFLAVLKNVSREDAVAIAERIRLAFAAA---VMQ 329

Query: 213 GPSIHI--TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            P + +  T+S G+A R    E    ++ +AD+ALY +K+ GRNRV  F +
Sbjct: 330 RPDLAVFPTLSVGVAARAESGEDFERLMQKADEALYRSKREGRNRVEVFGE 380


>gi|13473612|ref|NP_105180.1| hypothetical protein mll4270 [Mesorhizobium loti MAFF303099]
 gi|14024362|dbj|BAB50966.1| mll4270 [Mesorhizobium loti MAFF303099]
          Length = 403

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 85/162 (52%), Gaps = 10/162 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISS-----LGSYNE--KLSIVFFDIDYFKQINDNFGHPVGD 152
           ++  S  D LS LLN  AF        LG+  +   +++V  D+D+FK INDNFGH  GD
Sbjct: 220 VTSRSETDTLSRLLNRGAFTRQAEQAVLGAMRQGVPVALVIADLDHFKSINDNFGHASGD 279

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +VI   +  L          GR+GGEEFA    G++   A + A   R       + I  
Sbjct: 280 RVIETFAGFLREAAAGHHVAGRIGGEEFAIILPGTNLAAARLFAEGTRSAF--GALPIGG 337

Query: 213 GPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            P+ +  T S G+AE    E I+ ++ RAD+ALY+AK +GR+
Sbjct: 338 LPADNRCTASFGVAELHTGETIADLMRRADEALYLAKNAGRD 379


>gi|259907284|ref|YP_002647640.1| HmsT (Hemin storage system protein) [Erwinia pyrifoliae Ep1/96]
 gi|224962906|emb|CAX54387.1| HmsT (Hemin storage system protein) [Erwinia pyrifoliae Ep1/96]
 gi|283477102|emb|CAY73002.1| Uncharacterized protein yhcK [Erwinia pyrifoliae DSM 12163]
          Length = 365

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 91/185 (49%), Gaps = 7/185 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQ 141
           +  ++++L+        LS +D L+GL N     + L    +K      ++  DID+FK 
Sbjct: 173 TRRLVRQLYEEKETYCDLSMLDPLTGLYNRRGLKNRLADILDKHMGNHYVMLLDIDHFKA 232

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            NDN+GH +GD+ +  +S  +     +   V R GGEEF      ++E  A   A  +R+
Sbjct: 233 YNDNYGHAMGDQALTRVSVAIRDAVRSRDIVTRYGGEEFLVLLTNATESMAIKQAERIRE 292

Query: 202 IIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +   +I    ++  + H+TIS GIA     +     +  AD+ALY+AK  GRNRV+   
Sbjct: 293 FVLGLEIPHRFNNKVATHVTISVGIAP-LMADDFDKALAHADRALYLAKSRGRNRVIHLQ 351

Query: 260 DIENN 264
           D  N 
Sbjct: 352 DALNR 356


>gi|152997839|ref|YP_001342674.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150838763|gb|ABR72739.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 556

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 15/176 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+  LS  D L+ + N  AF       +SS  S    LSI+  D+DYFKQ ND +GH  G
Sbjct: 382 RLESLSLTDGLTNIANRRAFDQRLLVELSSDKSSKYDLSILLIDVDYFKQYNDTYGHING 441

Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D+ +  ++  L  +       V R GGEEF      ++ Q+A ++A  ++++I    INI
Sbjct: 442 DEALQKIASSLESIINKKTDLVARYGGEEFVVILPNTNAQQAEVIAQQMKQVI--GLINI 499

Query: 211 ---SSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              +S  +  IT+S GI  R    K    T++  AD ALY +K  GRN+     +I
Sbjct: 500 EHKTSKIADAITVSIGIVTRVKNGKTDADTLMKSADIALYHSKTQGRNQATHIDNI 555


>gi|104781367|ref|YP_607865.1| diguanylate cyclase [Pseudomonas entomophila L48]
 gi|95110354|emb|CAK15062.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           entomophila L48]
          Length = 348

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 8/173 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIN 143
           ++L +  +R  + + +D L+ L N  A  +              KL  V+ D+D+FK +N
Sbjct: 168 RDLRLEMDREQRKALLDPLTQLWNRGALAAFQDRERRLAEEQGLKLGTVYADLDHFKSVN 227

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD V+   + +L         + R GGEEF A    +  +E  ++A  +R +I
Sbjct: 228 DKHGHAEGDLVLCECARRLRAALRPDDLLVRQGGEEFVALLRVNDREELMLIAERVRLLI 287

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               + +SSGP + +++S G       E I   + RAD  LY AK+ GR+RVV
Sbjct: 288 GGGPVQLSSGP-LRVSVSIGCTLLSDSEEIDDALRRADSGLYAAKQGGRDRVV 339


>gi|323185999|gb|EFZ71356.1| diguanylate cyclase domain protein [Escherichia coli 1357]
          Length = 453

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 274 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 327

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 328 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 387

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 388 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 447

Query: 257 CFS 259
            + 
Sbjct: 448 LWK 450


>gi|82544060|ref|YP_408007.1| hypothetical protein SBO_1567 [Shigella boydii Sb227]
 gi|81245471|gb|ABB66179.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|332095579|gb|EGJ00591.1| diguanylate cyclase domain protein [Shigella boydii 3594-74]
          Length = 208

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 29  TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 82

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 83  DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 142

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 143 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 202

Query: 257 CFS 259
            + 
Sbjct: 203 LWK 205


>gi|212638995|ref|YP_002315515.1| signal transduction diguanylate cyclase [Anoxybacillus flavithermus
           WK1]
 gi|212560475|gb|ACJ33530.1| Signal transduction diguanylate cyclase [Anoxybacillus flavithermus
           WK1]
          Length = 363

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 101/196 (51%), Gaps = 17/196 (8%)

Query: 78  ISLLLGYISGSILKELFISYNRISQ---LSRIDCLSGLLN----HSAFISSLGSYNEK-- 128
           IS++  Y++ +I K++  S   +      +  D L+GL N    H+    ++   NE+  
Sbjct: 166 ISIIATYVTSNICKDIRQSKEMLQHYKAWATTDFLTGLYNVRQFHALLRENIAKANEQQS 225

Query: 129 -LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            L+++ FDID FK +ND++GH  GD ++  L + +  +     F  R GGEEF +  L +
Sbjct: 226 CLALILFDIDRFKCVNDSYGHDGGDVILRHLGELIRSLVPKNGFSFRNGGEEF-SILLPT 284

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQAL 244
            E+EA   A  +R  IE     +    ++HITIS GI+        EP   +  +AD AL
Sbjct: 285 CEREAMAFAEHIRTTIEQHSFFVQQ-QTVHITISIGISVFPTLATNEP--ELFKQADIAL 341

Query: 245 YVAKKSGRNRVVCFSD 260
           Y AK+ GRNR V +  
Sbjct: 342 YEAKQQGRNRTVVYKK 357


>gi|229916734|ref|YP_002885380.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
 gi|229468163|gb|ACQ69935.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
          Length = 559

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 94/196 (47%), Gaps = 13/196 (6%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYN 126
           I++ ++ LL  +S SI  E     NR+   S  D L+GL N  A        ++ + SY 
Sbjct: 364 IAVEVNRLLKTLSWSI--ERIDERNRLQHESLTDPLTGLHNQRALRRWTKERLNDVASY- 420

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             LS+   D+D+FK IND +GH  GD+V+                V R GGEEF      
Sbjct: 421 -PLSVFLIDLDHFKSINDTYGHAFGDEVLIEAGQLFTRSVRATDLVTRYGGEEFVFVFPR 479

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
             E  A ++   +R  ++      + G  I +T S GI      E + T++  AD+A+YV
Sbjct: 480 MDEAAAHLVGEKIRDALKRHDFG-TEGTRITVTASIGIETIYEYEDLDTVLRHADRAMYV 538

Query: 247 -AKKSGRNRVVCFSDI 261
            AK +GR+RV  + D+
Sbjct: 539 GAKFNGRDRVAHYHDL 554


>gi|52840981|ref|YP_094780.1| GGDEF domain-containing protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|54296770|ref|YP_123139.1| hypothetical protein lpp0809 [Legionella pneumophila str. Paris]
 gi|52628092|gb|AAU26833.1| GGDEF domain protein [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|53750555|emb|CAH11957.1| hypothetical protein lpp0809 [Legionella pneumophila str. Paris]
          Length = 516

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 8/156 (5%)

Query: 107 DCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N  ++    + S   +      LS+   DID+FK+INDNFGH  GDKV+  ++
Sbjct: 359 DSLTGLPNRESYDEHILDSFQRWKRSSSALSLAVCDIDHFKRINDNFGHLAGDKVLKKVA 418

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
                   T  F+ R+GGEEF      +S +EA  +   LRK++E+  +       + +T
Sbjct: 419 MIFKSSIRTVDFIARIGGEEFVFIFEQTSSKEAFGILEKLRKLVEDC-LFYYRDKKVDVT 477

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S G+     ++ I ++  RAD A+Y AK +G+NRV
Sbjct: 478 VSFGLTTVTEEDDIESLFMRADNAMYKAKNAGKNRV 513


>gi|307294787|ref|ZP_07574629.1| diguanylate cyclase [Sphingobium chlorophenolicum L-1]
 gi|306879261|gb|EFN10479.1| diguanylate cyclase [Sphingobium chlorophenolicum L-1]
          Length = 354

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 87/165 (52%), Gaps = 9/165 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N  AF  +L    E+       L++ F DID+FK IND  GH  GD+V+ F++
Sbjct: 190 DHLTGLPNRRAFEGTLREELERAHKEGQSLAVAFCDIDHFKLINDTHGHDTGDRVLKFVA 249

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-NSQINISSGPSI-H 217
             L         V R GGEEF     G +  EA    + +R+ +   S +N ++G  +  
Sbjct: 250 GLLAKASNDQCHVARHGGEEFVMLFRGKTAAEACEAVDSVRQDLSTRSLVNRANGERMER 309

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           ++ SAG+A     E     +  AD+ALY+AK+ GRNRV   ++++
Sbjct: 310 VSFSAGVANVLAYEDPRAALKAADRALYLAKEHGRNRVYLAAELD 354


>gi|254478757|ref|ZP_05092126.1| GGDEF domain protein [Carboxydibrachium pacificum DSM 12653]
 gi|214035322|gb|EEB76027.1| GGDEF domain protein [Carboxydibrachium pacificum DSM 12653]
          Length = 553

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 91/173 (52%), Gaps = 10/173 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148
            Y  +++ S  D L+   N   F  +L          NE +S++ FD+D FKQIND +GH
Sbjct: 381 KYYEVTRKSITDPLTKTYNRRYFNDALMENIMRADENNEPVSLIMFDLDNFKQINDTYGH 440

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+V+  ++ ++     +   V R GGEEFA      + ++A ++A  +R  + +  I
Sbjct: 441 LIGDEVLKEVARRIKNNVRSDDIVARFGGEEFAVILPKLTAEQAYMIAERIRTEVSSKPI 500

Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS-GRNRVVCFS 259
               G  I+ITI+ G+A+   K +    ++  AD+ALY   KS GRN++  + 
Sbjct: 501 KTEKG-DIYITITGGVADYPSKADSAEKLVSHADRALYAGGKSKGRNKIAIYE 552


>gi|91228484|ref|ZP_01262407.1| hypothetical protein V12G01_03335 [Vibrio alginolyticus 12G01]
 gi|269965509|ref|ZP_06179627.1| hypothetical protein, GGDEF [Vibrio alginolyticus 40B]
 gi|91187971|gb|EAS74280.1| hypothetical protein V12G01_03335 [Vibrio alginolyticus 12G01]
 gi|269829872|gb|EEZ84103.1| hypothetical protein, GGDEF [Vibrio alginolyticus 40B]
          Length = 402

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 89/168 (52%), Gaps = 10/168 (5%)

Query: 100 ISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I+ LS +D L+GL N  A        +S     ++ +SI+  D+D FK IND++GH VGD
Sbjct: 222 INDLSHLDALTGLYNRRAMEEIVPNLVSKAHKKSQAISIIMTDVDKFKAINDHYGHTVGD 281

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+A +S            + R GG+EF    L    Q+A I+A  +R  +E ++  + S
Sbjct: 282 SVMATISTIFKKHLPESACIVRFGGDEFMIVLL-EKAQQAKIVAEQIRLAVE-TETALQS 339

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  +T+S GI++    + +   +  AD+ALY +K +GRN V  F +
Sbjct: 340 FKT-EVTMSFGISQLSEGQSLQEALAEADEALYSSKHTGRNLVTLFGE 386


>gi|91791807|ref|YP_561458.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91713809|gb|ABE53735.1| GGDEF domain [Shewanella denitrificans OS217]
          Length = 337

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 89/166 (53%), Gaps = 8/166 (4%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNE----KLSIVFFDIDYFKQINDNFGHPVG 151
           S N +  L+ +D L+   N  A      S ++     + I+  D+DYFK IND +GH  G
Sbjct: 168 SENELQTLALLDPLTQHYNRLALSKRFQSLSQTSTLPMCILLLDLDYFKVINDTYGHEAG 227

Query: 152 DKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D V+   + Q+  + G +  F  R+GGEEF          +A  LA  +RK+I +++  +
Sbjct: 228 DIVLKACAKQISSIAGYSDTF--RVGGEEFCVLVQAEHANQAVELAESIRKLISDTEF-L 284

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               ++ +T+S G+A    K  +S ++ +AD+ LY+AK  GRN+V+
Sbjct: 285 FENQNLAVTVSVGVATFEAKMTLSNLLAKADKQLYLAKDLGRNKVM 330


>gi|28900039|ref|NP_799694.1| hypothetical protein VPA0184 [Vibrio parahaemolyticus RIMD 2210633]
 gi|28808322|dbj|BAC61527.1| hypothetical protein, GGDEF domain [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 418

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 83/168 (49%), Gaps = 10/168 (5%)

Query: 100 ISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I+ LS +D L+GL N  A        ++     N  +SIV  D+D FK IND +GH  GD
Sbjct: 238 INDLSHLDALTGLYNRRAMEVIVPNLVNQAREKNTPISIVMTDVDDFKTINDQYGHTTGD 297

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+A ++              R GG+EF    L ++E   A     +R+ IE     ++ 
Sbjct: 298 SVMATIATIFKQTLPESACTVRFGGDEFMIVLLANTENAKA-YTELVRRSIERETSLLAF 356

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                +T+S GI+E    + +   + RAD+ALY +K +GRN+V  F D
Sbjct: 357 KN--QVTMSFGISELMPNDSLQDALTRADEALYCSKHTGRNQVTTFQD 402


>gi|88860890|ref|ZP_01135526.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Pseudoalteromonas tunicata D2]
 gi|88817103|gb|EAR26922.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Pseudoalteromonas tunicata D2]
          Length = 503

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 85/158 (53%), Gaps = 12/158 (7%)

Query: 104 SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           SR D L+ + N  A    L S       Y+ +LSI+  DID+FK +ND +GH  GD+V+ 
Sbjct: 345 SRTDTLTQVGNRIACNEKLESNIAHSERYSTELSIILIDIDHFKNVNDKYGHLTGDQVLI 404

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++  L         + R GGEEF      + +Q+AA LA  LR++   +Q++ S     
Sbjct: 405 QVAQLLKAHIRESDSLFRWGGEEFLIITPNTGQQQAAELAEKLRRL---TQVH-SFHDEF 460

Query: 217 HITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRN 253
           +ITIS GI    H    S ++ +R D+ALY AK SGRN
Sbjct: 461 NITISLGITSYLHARDTSKSLFHRIDKALYQAKNSGRN 498


>gi|296388643|ref|ZP_06878118.1| hypothetical protein PaerPAb_10848 [Pseudomonas aeruginosa PAb1]
          Length = 525

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 8/161 (4%)

Query: 103 LSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N  +F+        +   +      +  DID+FK IND+ GH  GD+ +
Sbjct: 360 LASTDTLTGLHNRHSFLHQAELMLKAAERFRHPCVALMLDIDHFKNINDSHGHLTGDRAL 419

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +++ L         +GRLGGEEFAA        +A  +A  LR  +E  +++   G  
Sbjct: 420 QRVAETLRQGLREVDLLGRLGGEEFAALLPEIGLDQALDVAERLRAGVEALRVSNPDGEP 479

Query: 216 IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + +T+S G+A  R   + + +++ RAD ALY AK  GRNR 
Sbjct: 480 LRMTVSIGVALRRDAGDDLESLLVRADSALYQAKSGGRNRT 520


>gi|237731416|ref|ZP_04561897.1| diguanylate cyclase [Citrobacter sp. 30_2]
 gi|226906955|gb|EEH92873.1| diguanylate cyclase [Citrobacter sp. 30_2]
          Length = 449

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 89/168 (52%), Gaps = 16/168 (9%)

Query: 107 DCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D ++ L N   F ++L       + ++ LSIVF DID+FK +ND +GH  GD+VI  LS+
Sbjct: 285 DPMTRLFNRGYFYNALSNEIKMTAPHKPLSIVFCDIDFFKSVNDTWGHLQGDRVIIKLSE 344

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG--PSIHI 218
            +  +      V R+GGEEFA     ++   A  +A  +RK +E      + G  P I I
Sbjct: 345 IMQRLSRRNDIVARIGGEEFAILLPETNADAAFDIAERIRKHVEQQTQATTKGDFPRI-I 403

Query: 219 TISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           TIS GI      R   E ++     AD+ALY+AK  GRN VV +S  E
Sbjct: 404 TISLGIVTSVDNRSAPEQLADC---ADRALYMAKNRGRNCVVAYSGEE 448


>gi|170079448|ref|YP_001736086.1| sensory transduction protein [Synechococcus sp. PCC 7002]
 gi|169887117|gb|ACB00831.1| sensory transduction system regulatory protein (diguanylate cyclase
           (GGDEF) domain) [Synechococcus sp. PCC 7002]
          Length = 473

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           +E+ +    + +LS +D L+G+ N   F  +L         Y   L+++  DID+FK  N
Sbjct: 291 QEILMLNQELEELSHLDGLTGIANRRMFDLTLTKEWQRAVRYQYPLALMMIDIDFFKNYN 350

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D++GH  GDK I  +S  + ++   P     R GGEEF           A  +A +L K 
Sbjct: 351 DHYGHQKGDKCIQQVSSWVNLMARRPTDLAARYGGEEFVLLLTNVDFASAKNIAQELIKA 410

Query: 203 IENSQINISSGP-SIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I  ++I     P S  ITIS G  +A+   +  +   I++AD+ALY AK  GRNR+V 
Sbjct: 411 ITKAKIPHPKSPISEFITISIGLHVAQPQPQADMGHFIFQADKALYQAKHEGRNRIVT 468


>gi|251800002|ref|YP_003014733.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus sp. JDR-2]
 gi|247547628|gb|ACT04647.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus sp. JDR-2]
          Length = 538

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 83/162 (51%), Gaps = 13/162 (8%)

Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N         A +      +E L+++ FDID+FKQIND +GH VGD+ +  + 
Sbjct: 363 DGLTGIFNRLHFIHLSEALLHQSAEQDEPLALLLFDIDHFKQINDAYGHDVGDRALLHVV 422

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHI 218
           D    +       GR GGEEF  A  G S +EA   A  +R +I   +    +S P + +
Sbjct: 423 DICRQLLRPEDVFGRYGGEEFVVAMPGLSHEEAETAAQRIRSEIAAQTIAAATSEPPLSV 482

Query: 219 TISAGIA---ERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
           T S G+A     C +    I+ ++  AD ALY AK SGRN V
Sbjct: 483 TASFGVAMAGAGCKEAGGGINQLLKAADNALYEAKNSGRNTV 524


>gi|125973398|ref|YP_001037308.1| diguanylate cyclase [Clostridium thermocellum ATCC 27405]
 gi|256004374|ref|ZP_05429355.1| diguanylate cyclase [Clostridium thermocellum DSM 2360]
 gi|281417600|ref|ZP_06248620.1| diguanylate cyclase [Clostridium thermocellum JW20]
 gi|125713623|gb|ABN52115.1| diguanylate cyclase [Clostridium thermocellum ATCC 27405]
 gi|255991658|gb|EEU01759.1| diguanylate cyclase [Clostridium thermocellum DSM 2360]
 gi|281409002|gb|EFB39260.1| diguanylate cyclase [Clostridium thermocellum JW20]
 gi|316940368|gb|ADU74402.1| diguanylate cyclase [Clostridium thermocellum DSM 1313]
          Length = 376

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 9/174 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS------YNEK-LSIVFFDIDYFKQINDNFGHP 149
           + R  +L+R D L+GL N       L        Y++K L+++ FDID FK+ ND +GH 
Sbjct: 186 HQREFKLARTDKLTGLANRHMLDQKLEEEALYCEYSKKPLNVLMFDIDDFKKFNDTYGHI 245

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GDK+++   D +           R GGEEF         ++A  +A+ +R  +E   + 
Sbjct: 246 WGDKLLSLFGDIIKQSIRKTDMAFRYGGEEFMVLIRDLDLEKAKCVADRIRCQLEKQNLF 305

Query: 210 ISSGPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              G ++   T+S GIA+   H + I  ++  AD+ALY AKK G+N VV + +I
Sbjct: 306 SDEGHNMGKATVSCGIAQFPTHSDDIKKVVDYADRALYYAKKIGKNIVVSYDEI 359


>gi|119776102|ref|YP_928842.1| diguanylate cyclase [Shewanella amazonensis SB2B]
 gi|119768602|gb|ABM01173.1| putative diguanylate cyclase (GGDEF domain protein) [Shewanella
           amazonensis SB2B]
          Length = 557

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 7/161 (4%)

Query: 101 SQLSRIDCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            QL+  D L+G+ N  AF      +  L S     +++  DID FK IND  GH VGDKV
Sbjct: 395 QQLAATDPLTGIANRRAFSEQLQRLWHLDSQRRCRALIMIDIDRFKSINDTLGHEVGDKV 454

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  +          GR GGEEF      +SE+EA I+A  +R  IE+      +  
Sbjct: 455 LTDIARVIRYSIRNRDQCGRWGGEEFVVLLASASEEEAGIIAERIRHNIESLSFPAPAN- 513

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + +T S G+           I+ RAD+A+Y AK +G NRV
Sbjct: 514 KLKVTASVGVCLDEGHSRHEDILRRADEAMYHAKDAGGNRV 554


>gi|255598018|ref|XP_002536908.1| conserved hypothetical protein [Ricinus communis]
 gi|223518148|gb|EEF25477.1| conserved hypothetical protein [Ricinus communis]
          Length = 175

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 84/160 (52%), Gaps = 7/160 (4%)

Query: 107 DCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GL+N   F S+L         E+  ++  DID+FK++ND++GH  GDKVI  ++  
Sbjct: 10  DGLTGLMNRKGFDSALHQCLDTGPAEETCVMIADIDFFKKVNDSYGHLFGDKVIQAVARI 69

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI--NISSGPSIHIT 219
           L  V G      R GGEEF      +S   A  +A ++R+ +    I  N++     +IT
Sbjct: 70  LKTVSGNLYTAARYGGEEFVLLLPHTSMDIAHEIAENIRRQVAAITIKNNVTQRLISNIT 129

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           IS G+      E   + I RADQALY +K  GRN+V   S
Sbjct: 130 ISMGVTAYHPGESADSFITRADQALYTSKAQGRNQVTMLS 169


>gi|254225783|ref|ZP_04919388.1| GGDEF family protein [Vibrio cholerae V51]
 gi|254286467|ref|ZP_04961424.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|125621689|gb|EAZ50018.1| GGDEF family protein [Vibrio cholerae V51]
 gi|150423416|gb|EDN15360.1| GGDEF family protein [Vibrio cholerae AM-19226]
          Length = 512

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 84/172 (48%), Gaps = 21/172 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  ++  D L+G  N   F       IS     +  LS+   D+D+FKQ+NDN+GHP 
Sbjct: 351 KRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPA 410

Query: 151 GD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GD    +V+A     +  V GT   + R GGEEF       ++QEA      +R  I   
Sbjct: 411 GDLVLQRVVALCQRHIAQV-GT---LCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMH 466

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
               +S P   +T+S G+ +    E +  +  RADQA+Y AK  GRN+VV  
Sbjct: 467 ----ASQP--QVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVVSL 512


>gi|22298701|ref|NP_681948.1| hypothetical protein tlr1158 [Thermosynechococcus elongatus BP-1]
 gi|22294881|dbj|BAC08710.1| tlr1158 [Thermosynechococcus elongatus BP-1]
          Length = 443

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 10/164 (6%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+ +D L+G  N    +S + +Y  +       L+++ FDID+FK+IND +GH  GD V+
Sbjct: 278 LAWLDPLTGAFNRRFLLSRVEAYESQAATGEALLTVMIFDIDHFKRINDTYGHDQGDVVL 337

Query: 156 AFLSDQLVVVFGTPM--FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
             L+ +   V  +     + R GGEEF      + E +A  +A +L  ++ +  + ++  
Sbjct: 338 RTLAARAKQVLESCQDGILVRWGGEEFVLLFFVAYEDQAKAVAEELCSVVRSQPVELTDQ 397

Query: 214 PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S+ +TIS G+   R  ++ +S  I RADQALY AK  GR+R V
Sbjct: 398 YSLSVTISLGVTLFRGGEQVLSDSIPRADQALYEAKHGGRDRWV 441


>gi|148547630|ref|YP_001267732.1| diguanylate cyclase [Pseudomonas putida F1]
 gi|148511688|gb|ABQ78548.1| diguanylate cyclase [Pseudomonas putida F1]
          Length = 381

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 96/193 (49%), Gaps = 13/193 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSR-IDCLSGLLNHSAFISSLGSYNEK--- 128
           ++S T SL     +   LK      +R++ ++   D L+GL N  AF  +  + + +   
Sbjct: 180 VVSATQSLSSALTTAWRLKHEMQRAHRLAMVASCTDELTGLNNRRAFFDNASAQHAQCRD 239

Query: 129 ----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
               ++++  D+D+FKQIND FGH  GD+V+  +   +          GRLGGEEFA   
Sbjct: 240 AGKFMAVLMLDVDHFKQINDTFGHAAGDQVLQRIGAAISASLRDNDIAGRLGGEEFAILL 299

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQA 243
             +    A  +A  LR +I   ++N    P   +T S G+A  +     +  ++  AD A
Sbjct: 300 PNTPPDTAIEVAERLRALIAKLRVN-DEHP---VTASIGLAFAKAPATELGALLSSADSA 355

Query: 244 LYVAKKSGRNRVV 256
           +Y++K SGRNRV 
Sbjct: 356 MYLSKVSGRNRVT 368


>gi|289625217|ref|ZP_06458171.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|330871345|gb|EGH06054.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 425

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 95/188 (50%), Gaps = 22/188 (11%)

Query: 85  ISGSILKELFISYNRISQLSR---------IDCLSGLLNHSA-------FISSLGSYNEK 128
           + G+I   + IS +  ++L R          D L+GL N  A        I +     + 
Sbjct: 233 LEGTITHYVSISQDVTTRLGREQKLLEIAHSDPLTGLNNRRAAEHTLERLIDTARISGKP 292

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            S++  DID+FK +ND +GHP GD+V+  ++  L           R GGEEF      SS
Sbjct: 293 FSLIIGDIDHFKSVNDRYGHPAGDRVLTSVAVILKQRIRLQDVAARWGGEEFLILVPDSS 352

Query: 189 EQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
              AA LA+ +R+ +E   I N  S     +TIS G+A+    E  +++I RA++ALY A
Sbjct: 353 LDHAAELADRIREGVEGLLIPNTGS-----VTISLGVAQLSPGETAASLIQRAEKALYQA 407

Query: 248 KKSGRNRV 255
           K+ GRNRV
Sbjct: 408 KRRGRNRV 415


>gi|254506530|ref|ZP_05118671.1| sensory box/ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219550403|gb|EED27387.1| sensory box/ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 633

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 93/178 (52%), Gaps = 20/178 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYN---------EKLSIVFFDIDYFKQINDNFGH 148
           NR+ +LS  D L+GL N   F + + S +         E  ++   DID+FK+IND +GH
Sbjct: 464 NRLRELSERDPLTGLWNRRKFDAEMSSLSLKTKRYPNSETATLALLDIDHFKRINDTYGH 523

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD  I  ++  L         V R+GGEEFA     +   EA I+ N +R     + I
Sbjct: 524 DKGDVTIKEVARILTNHLRETDVVARIGGEEFAIIMPHTPLNEAEIVINRVR-----TAI 578

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSDIENNT 265
           +I +  S++ITIS GI E     P +   Y RAD ALY +K  GRN+V   S +E+++
Sbjct: 579 HIET--SLNITISGGITEIG---PTAGNSYKRADIALYESKTLGRNQVNILSVVESDS 631


>gi|315619588|gb|EFV00114.1| diguanylate cyclase domain protein [Escherichia coli 3431]
          Length = 453

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNE---KLSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 274 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 327

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 328 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 387

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV 
Sbjct: 388 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 447

Query: 257 CFS 259
            + 
Sbjct: 448 LWK 450


>gi|91977506|ref|YP_570165.1| response regulator PleD [Rhodopseudomonas palustris BisB5]
 gi|91683962|gb|ABE40264.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris BisB5]
          Length = 457

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 81/162 (50%), Gaps = 9/162 (5%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N     S L       G+  + L+++  DID+FK IND++GH  GD V+   +
Sbjct: 295 DGLTGLHNRRYMESHLATLAEQAGARGKPLALMILDIDFFKSINDSYGHDAGDDVLREFA 354

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
            ++           R GGEEF      +    A ++A  LR+ I      I  G   I +
Sbjct: 355 TRIRKSIRGIDLACRYGGEEFVIVMPETDLHVAQMVAERLRRAIAGEPFGIEKGAKRIEV 414

Query: 219 TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           TIS G++    K EP+  ++ RAD ALY AK  GRNRVV  +
Sbjct: 415 TISIGLSTLERKGEPVRDLLKRADTALYRAKHDGRNRVVAAA 456


>gi|330973628|gb|EGH73694.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 354

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 114/240 (47%), Gaps = 15/240 (6%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV---IISIT 77
           S S    +I  S    ++    + +A   L +  L+P  G++   V  L +    I S++
Sbjct: 97  SLSVAVMIILCSTLLVVYTRDYLLVA--VLAWCILSPAQGVDTDSVATLFMTLFFITSVS 154

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFF 134
           +  +L +     L+ +    ++  +LS  D L+ +LN  A + +L ++   N     +  
Sbjct: 155 LGSVLNHTYTRTLRTVLSLEHQFRELSMTDDLTAILNRRALMQALDNHVLNNSAGYFLML 214

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID FK IND FGH  GD+ +  ++  L    G+  F GR+GGEEF       SE +A  
Sbjct: 215 DIDDFKTINDQFGHDAGDQALRVMAGCLQKTVGSLAF-GRMGGEEFGVILPMCSEDDARD 273

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
              DL + I  S   ++  P   +T SAG+A+       S ++  AD  LY AK+ G++R
Sbjct: 274 YVLDLLECIRKS---LAVSP---LTCSAGLADIPAAADSSAVLKTADINLYKAKRGGKDR 327


>gi|300697085|ref|YP_003747746.1| signal transduction ggdef domain protein [Ralstonia solanacearum
           CFBP2957]
 gi|299073809|emb|CBJ53330.1| putative signal transduction ggdef domain protein [Ralstonia
           solanacearum CFBP2957]
          Length = 373

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 13/178 (7%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           F +  +++  +  D L+G L    F       +     + E L  ++ D+DYFK IND +
Sbjct: 189 FAAEAQLADRANTDHLTGRLARQRFFELGAFAVERARHHGEPLCALYLDVDYFKSINDAW 248

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+ +  LSD+L  V       GRLGG+EFA    G +   A  +   L+  +   
Sbjct: 249 GHAAGDEALVALSDELAGVLRPHDLFGRLGGDEFAVLLPGCNLAAALAVVERLKTAVAAH 308

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +      P   +T+S G A    K+ ++ ++  AD AL  AK+ GRNR VC S    N
Sbjct: 309 R-----HPMGRLTVSVGAAPLRPKQELAHLLADADLALIEAKRRGRNR-VCVSSGSTN 360


>gi|262044333|ref|ZP_06017399.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038392|gb|EEW39597.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 474

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 77/135 (57%), Gaps = 6/135 (4%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           ++ L+++  DID FK++ND  GH  GD V+   + Q+  + G    V R+GGEEFA AA+
Sbjct: 331 DKLLTVMVLDIDGFKRVNDALGHEGGDCVLTQFAQQVRQLVGEQGMVARIGGEEFAVAAV 390

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CH---KEPISTIIYRA 240
             S Q+  +LA  +R  +E+    +   P IH+TIS G+  R   H    E  + ++  A
Sbjct: 391 VDSAQQGYLLAEKIRHGVESQPFGLGQNP-IHLTISLGLETREVGHARITELFNQLLLAA 449

Query: 241 DQALYVAKKSGRNRV 255
           D  +  AK+SGRN++
Sbjct: 450 DDEMVKAKQSGRNQI 464


>gi|153009132|ref|YP_001370347.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188]
 gi|151561020|gb|ABS14518.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188]
          Length = 263

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 79/156 (50%), Gaps = 8/156 (5%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N   F  +L  Y          + ++  D+D+FK +ND +GH +GD V+  ++
Sbjct: 107 DSLTGMQNRRYFDEALKEYLVQFDRIQRPVGLMIIDLDHFKAVNDTYGHDIGDVVLQEVA 166

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V RLGGEEFA  A     +    LAN +RK I   +I++     + +T
Sbjct: 167 RCLKDYTRYHDVVARLGGEEFAVLAPNMDAELMIKLANRIRKAISTLEIDLGD-EKLGVT 225

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S G+A    +E    +  RAD+ LY AK  GRNRV
Sbjct: 226 VSIGLAIWDRRETSKDLYRRADKMLYAAKNMGRNRV 261


>gi|149375436|ref|ZP_01893206.1| hypothetical protein MDG893_16307 [Marinobacter algicola DG893]
 gi|149360141|gb|EDM48595.1| hypothetical protein MDG893_16307 [Marinobacter algicola DG893]
          Length = 397

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 9/167 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNH-SAFISSLGSYNEKL------SIVFFDIDYFKQINDNFGH 148
           S  R+  ++  D L+GL N  S F   + +++  L      +++  D+D+FKQIND +GH
Sbjct: 219 SEQRLRIMAERDGLTGLYNRRSLFREGIRAFDNALQTQSPMAVLMMDLDHFKQINDRWGH 278

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+ + F++  L         +GR+GGEEF      S+E +  I+   L   I N+  
Sbjct: 279 AAGDEALRFVARTLRKELRNDDIIGRIGGEEFTVVLRISAEDDVRIITRRLLDAIANNGR 338

Query: 209 NISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNR 254
            I   P ++++ S G  ER ++    + ++  AD ALY AK  GRNR
Sbjct: 339 EIQGLP-LYLSASIGGVERANRHTTFADMMIEADAALYNAKNKGRNR 384


>gi|89093276|ref|ZP_01166226.1| serine/threonine kinase with two-component sensor domain
            [Oceanospirillum sp. MED92]
 gi|89082572|gb|EAR61794.1| serine/threonine kinase with two-component sensor domain
            [Oceanospirillum sp. MED92]
          Length = 1723

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 59/166 (35%), Positives = 84/166 (50%), Gaps = 10/166 (6%)

Query: 100  ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
            + +L   D L+GL N   F + L             LSIV FD+DYFK  ND +GH  GD
Sbjct: 1548 LKKLVDSDGLTGLANRRCFDTYLARTWLRLRREQNPLSIVMFDVDYFKTFNDTYGHQSGD 1607

Query: 153  KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
              +  L+  +      P   V R GGEEF      + E+ A  +A  +   + + +I + 
Sbjct: 1608 DCLVMLAKTVREQIQRPADLVARYGGEEFIVVLPDTDEEGAMAVAGQICVAVASLKIPHC 1667

Query: 211  SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
            +S  + H+TIS G+A  C   +   ++I  ADQALY AKK GRN+V
Sbjct: 1668 NSVVADHVTISVGVATTCPDTQGPDSLIELADQALYEAKKQGRNQV 1713


>gi|115360197|ref|YP_777335.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
 gi|115285485|gb|ABI91001.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
          Length = 510

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 12/186 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           L+   I+ +++ +L+  D L+GL N   F + L    ++       LS++F D+D+FK  
Sbjct: 326 LRRRQIAESKLYRLAHTDSLTGLDNRGTFDAVLAKEAQRASRSGRPLSVLFVDVDHFKAF 385

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD V+  ++             V R GGEEF      +  + AA +A  +R+
Sbjct: 386 NDYYGHLAGDDVLRRVAQSASRCLRRDSDHVARYGGEEFVVTLPDTDARGAATVAETIRR 445

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            I    I     P  H+T S G A     +   + ++ +AD+ALY AK  GRNRV   SD
Sbjct: 446 AIAGLDIAHGRSPYGHVTTSIGTATATGGRVNAAALLRQADEALYRAKSGGRNRV---SD 502

Query: 261 IENNTC 266
            E +T 
Sbjct: 503 AEASTA 508


>gi|261212996|ref|ZP_05927280.1| GGDEF family protein [Vibrio sp. RC341]
 gi|260838061|gb|EEX64738.1| GGDEF family protein [Vibrio sp. RC341]
          Length = 338

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 95/174 (54%), Gaps = 8/174 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIND 144
           S+LKE      ++ + +  D LSGL N  AF   + +L      +S++  DID+FK +ND
Sbjct: 166 SLLKEQLA---KVQKDALFDSLSGLYNRRAFDGDMFTLIHAGHPVSLIMLDIDHFKILND 222

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD++I  ++ +L  +    +   R GGEEFA  A   S + A   A  +R+ IE
Sbjct: 223 TYGHLFGDQIIRAIAKRLQSLCRDGVTAYRYGGEEFALIAPRKSMRIARQFAESVRRSIE 282

Query: 205 NSQI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              + +  SG S+  IT S G+ E+   + + +++ RAD  LY AK  GRNRV+
Sbjct: 283 KLTVKDRRSGQSVGSITASFGVVEKVDGDSLESLVERADALLYDAKNLGRNRVM 336


>gi|242277738|ref|YP_002989867.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
 gi|242120632|gb|ACS78328.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
          Length = 262

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           N +  LS +D L+GL N           I     +    SI+  D+D FK INDNFG+ V
Sbjct: 85  NDLENLSSVDKLTGLANRLRLDEIFNYEIGKAQRHGNSFSILLLDLDRFKNINDNFGNDV 144

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDKV+   +  L         +GR  GEEF   A     Q A +LA+ +RKII  +    
Sbjct: 145 GDKVLQETAKLLKNNLRKTDTIGRWSGEEFLIIAPEIGHQNAMLLADKIRKIIAGNYYE- 203

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S G    +T S GI+    ++   ++  RAD+AL +AK +GRNRVV
Sbjct: 204 SVGT---VTCSIGISSFHDEDSKESMTDRADRALDMAKDAGRNRVV 246


>gi|239616993|ref|YP_002940315.1| response regulator receiver modulated diguanylate cyclase
           [Kosmotoga olearia TBF 19.5.1]
 gi|239505824|gb|ACR79311.1| response regulator receiver modulated diguanylate cyclase
           [Kosmotoga olearia TBF 19.5.1]
          Length = 469

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 7/164 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           + ID L+ L N  A +S L  Y E        L++   D+D FK+IND +GH  GD V+ 
Sbjct: 305 TEIDFLTSLFNRKATLSRLKEYIELAKRRMLSLTVAMLDVDDFKEINDTYGHLFGDTVLK 364

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +             VGR GGEEF     G    EA      +   + N      +G  I
Sbjct: 365 EIGKIFRNSMRKSDIVGRYGGEEFLIIFPGIKAAEAVEALERVLDELRNYDWRAVTGKPI 424

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +T+SAG+AE      +  ++ +AD  LY AK+SG++R+  + +
Sbjct: 425 KVTVSAGVAEFSDDTTLRELVNKADNELYKAKRSGKDRISVYRE 468


>gi|152970190|ref|YP_001335299.1| putative transport protein [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238894673|ref|YP_002919407.1| putative transport protein [Klebsiella pneumoniae NTUH-K2044]
 gi|330006439|ref|ZP_08305603.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
 gi|150955039|gb|ABR77069.1| putative transport protein [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238546989|dbj|BAH63340.1| putative transport protein [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|328535837|gb|EGF62269.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
          Length = 474

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 77/135 (57%), Gaps = 6/135 (4%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           ++ L+++  DID FK++ND  GH  GD V+   + Q+  + G    V R+GGEEFA AA+
Sbjct: 331 DKLLTVMVLDIDGFKRVNDALGHEGGDCVLTQFAQQVRQLVGEQGMVARIGGEEFAVAAV 390

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CH---KEPISTIIYRA 240
             S Q+  +LA  +R  +E+    +   P IH+TIS G+  R   H    E  + ++  A
Sbjct: 391 VDSAQQGYLLAEKIRHGVESQPFGLGQNP-IHLTISLGLETREVGHARITELFNQLLLAA 449

Query: 241 DQALYVAKKSGRNRV 255
           D  +  AK+SGRN++
Sbjct: 450 DDEMVKAKQSGRNQI 464


>gi|153837362|ref|ZP_01990029.1| ggdef family protein [Vibrio parahaemolyticus AQ3810]
 gi|149749277|gb|EDM60056.1| ggdef family protein [Vibrio parahaemolyticus AQ3810]
          Length = 440

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 95/167 (56%), Gaps = 7/167 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           K+L ++  ++ +L+  D L+ L N    I   ++L S  + ++++ FDID FK IND +G
Sbjct: 257 KQLTLANQQLLELTLTDPLTKLYNRRHLIERLATLSSLQKNVTVMVFDIDDFKSINDKYG 316

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD+ I  ++D    +    + + R+GGEEFA      SE+EA  LA  +   + +  
Sbjct: 317 HLIGDQAIVAVADTAKSLTDERITLARIGGEEFALVTASLSEKEAETLAKAICSCVYDRP 376

Query: 208 INISSGPSIHITISAGIAERCHKEPISTI-IYRADQALYVAKKSGRN 253
           + + +G +IH+++S G A   ++E    I ++ ADQ +Y  K +G+N
Sbjct: 377 V-LLNGQAIHVSVSLGCA--YYREFKGIINLHEADQLMYCGKMNGKN 420


>gi|16129481|ref|NP_416039.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89108363|ref|AP_002143.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           W3110]
 gi|170081189|ref|YP_001730509.1| diguanylate cyclase [Escherichia coli str. K-12 substr. DH10B]
 gi|238900742|ref|YP_002926538.1| putative diguanylate cyclase [Escherichia coli BW2952]
 gi|256022799|ref|ZP_05436664.1| putative diguanylate cyclase [Escherichia sp. 4_1_40B]
 gi|301021666|ref|ZP_07185657.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
 gi|307138172|ref|ZP_07497528.1| predicted diguanylate cyclase [Escherichia coli H736]
 gi|331642106|ref|ZP_08343241.1| putative GGDEF domain protein [Escherichia coli H736]
 gi|20140964|sp|P76147|YNEF_ECOLI RecName: Full=Uncharacterized protein YneF
 gi|1787802|gb|AAC74595.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|85675005|dbj|BAA15205.2| predicted diguanylate cyclase [Escherichia coli str. K12 substr.
           W3110]
 gi|169889024|gb|ACB02731.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238862232|gb|ACR64230.1| predicted diguanylate cyclase [Escherichia coli BW2952]
 gi|260449357|gb|ACX39779.1| diguanylate cyclase [Escherichia coli DH1]
 gi|299881520|gb|EFI89731.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
 gi|315136162|dbj|BAJ43321.1| putative diguanylate cyclase [Escherichia coli DH1]
 gi|323942069|gb|EGB38246.1| GGDEF domain-containing protein [Escherichia coli E482]
 gi|331038904|gb|EGI11124.1| putative GGDEF domain protein [Escherichia coli H736]
          Length = 315

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 151 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 208

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 209 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSI 267

Query: 223 GIAE-RCH----KEPISTIIYRADQALYVAKKSGRNR 254
           G+   R       +  + ++  AD  LY +KK GRNR
Sbjct: 268 GVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304


>gi|325292368|ref|YP_004278232.1| sensory box/GGDEF family protein [Agrobacterium sp. H13-3]
 gi|325060221|gb|ADY63912.1| putative sensory box/GGDEF family protein [Agrobacterium sp. H13-3]
          Length = 325

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 89/178 (50%), Gaps = 8/178 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQ 141
           G  L++L    +R  + +  D L+GL N    +  L      +  + L+++  DID+FK 
Sbjct: 146 GIQLRDLRQERDRALKSALSDELTGLGNRRYAMDILNQMLGPNKAQALAVIIMDIDHFKA 205

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLR 200
           +ND FGH  GD V+   + +L    G    VGR+GGEEF     GS    A + +   L 
Sbjct: 206 VNDRFGHACGDLVLKDFATRLSAAIGRDDLVGRIGGEEFLLVLSGSRMLSAESTMQKLLA 265

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + E S   +S  P    + SAGIA     E  S ++ RAD ALY AK +GRNR V +
Sbjct: 266 TLTEASP--LSDVPDFRYSCSAGIAFADPGESASDVLRRADTALYEAKNTGRNRFVVY 321


>gi|261822569|ref|YP_003260675.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
 gi|261606582|gb|ACX89068.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
          Length = 235

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 81/151 (53%), Gaps = 4/151 (2%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+ + N  A I  +    E+   +++  DID+FKQ+ND +GHP GD VI  L  ++  
Sbjct: 84  DPLTSVYNRGAIIERINHALERNQAALIVLDIDHFKQVNDTYGHPTGDAVICDLVSRVQH 143

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           +  T   +GR+GGEEF     G +  +A  LA+ L   +  +++ +S  P   +T S G+
Sbjct: 144 LLSTTNSIGRVGGEEFTILLEGYTLMQAVALASQLHHDL--NRMPLSVLPQQRVTASFGV 201

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +    K     +   AD ALY AK+ GRNRV
Sbjct: 202 SWAPQKTRFDALYGAADIALYKAKEKGRNRV 232


>gi|239908783|ref|YP_002955525.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239798650|dbj|BAH77639.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 825

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/160 (34%), Positives = 77/160 (48%), Gaps = 8/160 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N     S +  Y E       ++  +  D+DYFKQ+ND +GH  GD V+  LS
Sbjct: 656 DPLTGLHNRRFLDSYVHHYEEISRRTEKRVGFLMVDVDYFKQVNDKYGHLAGDAVLKELS 715

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +           R GGEEF            A++A  +R+ +E     + +G +IH T
Sbjct: 716 GLVRQTVRAADLAVRFGGEEFLILLHEVRPNFTAVVAEKIRQTVEAHAFPLPNGTTIHKT 775

Query: 220 ISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +S G AE           I  AD ALY AK+ GRN+V+CF
Sbjct: 776 VSVGFAEYPTDAASFYKAIKFADVALYKAKEGGRNKVLCF 815


>gi|26990063|ref|NP_745488.1| GGDEF domain-containing protein [Pseudomonas putida KT2440]
 gi|24984989|gb|AAN68952.1|AE016526_12 GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 381

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 96/193 (49%), Gaps = 13/193 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSR-IDCLSGLLNHSAFISSLGSYNEK--- 128
           ++S T SL     +   LK      +R++ ++   D L+GL N  AF  +  + + +   
Sbjct: 180 VVSATQSLSSALTTAWRLKHEMQRAHRLAMVASCTDELTGLNNRRAFFDNASAQHVRCRD 239

Query: 129 ----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
               ++++  D+D+FKQIND FGH  GD+V+  +   +          GRLGGEEFA   
Sbjct: 240 AGTFMAVLMLDVDHFKQINDTFGHAAGDQVLQRIGAAISASLRDNDIAGRLGGEEFAILL 299

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQA 243
             +    A  +A  LR +I   ++N    P   +T S G+A  +     +  ++  AD A
Sbjct: 300 PNTPPDTAIEVAERLRALIAKLRVN-DEHP---VTASIGLAFAKAPATELGALLSSADSA 355

Query: 244 LYVAKKSGRNRVV 256
           +Y++K SGRNRV 
Sbjct: 356 MYLSKVSGRNRVT 368


>gi|114048339|ref|YP_738889.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113889781|gb|ABI43832.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 575

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 11/175 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           +   R  +++R+D L+G+LN  A        F+ +  +      ++ FD+D+FK+IND++
Sbjct: 385 LQKRRFMRMARMDALTGVLNRGAGQDLGENLFVQA-AARGGNFCVILFDLDHFKRINDSY 443

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD  +  + + L           R+GGEEFA     ++E +   +A   R  IE  
Sbjct: 444 GHGTGDWALKKVVEALKSHVRNGDVFARIGGEEFALFLPYANESKGMEVAEQCRSRIEAI 503

Query: 207 QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
             ++ SG    IT S G++    ++  +  +++RAD ALY AK +GRN V C+ D
Sbjct: 504 DTHL-SGHKFTITASFGVSGMTKEDLSLDPLLHRADMALYAAKSNGRNSVFCYED 557


>gi|332185074|ref|ZP_08386823.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
 gi|332014798|gb|EGI56854.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
          Length = 953

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 91/171 (53%), Gaps = 8/171 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL ++  ++ +L+  D L+ L N    ++ + +         E+      D+D+FK+IND
Sbjct: 778 ELRVANEQLDRLASTDPLTNLANRRTLMAKIETIAQCAQKRGEQFVFALLDVDHFKRIND 837

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+++  ++  +         V R GGEE A     +++ EA  +   +R +I 
Sbjct: 838 QHGHGAGDEILVAIAAAIRSGVRAQDCVARYGGEEIAILFPRTAKSEALGIVERVRSMIA 897

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S + ++ G  I +T+SAG+A       I+ +I RAD+ALY AK+ GRNRV
Sbjct: 898 SSPM-MAEGQPIGVTLSAGVAAWRPGRDIADMIRRADEALYRAKRGGRNRV 947


>gi|317153608|ref|YP_004121656.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
 gi|316943859|gb|ADU62910.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
          Length = 369

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 96/185 (51%), Gaps = 23/185 (12%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+R D ++G+ N   F+   G           +LS++  D+D+FK IND  GH VGD
Sbjct: 185 MCRLARTDSMTGMWNRGYFMELAGRELNRARRSGGELSLIMLDVDHFKAINDTHGHDVGD 244

Query: 153 KVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             +A +  +L  V G  +       RLGGEEFA     +S ++A  +A  + + I  + +
Sbjct: 245 --VALM--ELARVIGESVREVDVAARLGGEEFAVMLPDTSAEDACAVAVRIARTIRRAVV 300

Query: 209 NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV------VCFSDI 261
           +   GP + +T+S G+A     K+ + +++  +D ALY AKK+GR+RV      VC   +
Sbjct: 301 DSPRGP-VSMTVSMGLASFEESKDSLDSLLKYSDIALYAAKKNGRDRVETYRRSVCPRSV 359

Query: 262 ENNTC 266
               C
Sbjct: 360 RGVAC 364


>gi|299136568|ref|ZP_07029751.1| diguanylate cyclase [Acidobacterium sp. MP5ACTX8]
 gi|298601083|gb|EFI57238.1| diguanylate cyclase [Acidobacterium sp. MP5ACTX8]
          Length = 505

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 83/167 (49%), Gaps = 10/167 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+++L   D L+G  N  AF       + +   + + LS++  D+D+FKQ+ND  GH  
Sbjct: 324 GRLTELVSTDGLTGAPNRRAFDQRIDVEVRAAHRFAQPLSLLLIDVDHFKQLNDAKGHLA 383

Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD  +  ++  L         F+ R GGEEF      +    AA +A+ L   I N  + 
Sbjct: 384 GDDCLVQIAQALHRALPRATDFLARYGGEEFVVLLPATDGFGAATVAHTLHSAISNLHLE 443

Query: 210 ISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNR 254
             S PS  +T+S GI+      P  T  +I+ ADQALY AK  GRNR
Sbjct: 444 HPSSPSGVVTVSIGISTYDGSVPPDTLELIHTADQALYRAKSLGRNR 490


>gi|254457579|ref|ZP_05071007.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207086371|gb|EDZ63655.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 588

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 79/165 (47%), Gaps = 13/165 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  LS  D L+G+ N   F       I     Y   LS++ FDID+FK +ND  GH VGD
Sbjct: 429 LEHLSVTDALTGIGNRRYFHQKIEEEIHRAKRYQHPLSLIMFDIDFFKHVNDKHGHSVGD 488

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+   +  +  +        R+GGEEF      +   EA  +A  LR  IE  Q     
Sbjct: 489 EVLIEYTKLINSLLREGDVFCRIGGEEFIIILPHALRDEAQKIAEKLRAKIEFCQ----- 543

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              I IT+S G+ E    E I  I  R D ALY AK+SGRN VV 
Sbjct: 544 -KVIPITMSFGVVEYIVGEEIEFIFKRVDDALYKAKESGRNIVVV 587


>gi|170741157|ref|YP_001769812.1| diguanylate cyclase [Methylobacterium sp. 4-46]
 gi|168195431|gb|ACA17378.1| diguanylate cyclase [Methylobacterium sp. 4-46]
          Length = 386

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 73/158 (46%), Gaps = 2/158 (1%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           R++ L+  D L+GL N               +I+  DID+FK IND  GH  GD V+   
Sbjct: 212 RLAHLAGTDPLTGLANRRGLSQLAHGRARPAAILLADIDHFKAINDGHGHEGGDAVLVEF 271

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           + +L           R GGEEF     G+    A  LA  +R   E     +   P I +
Sbjct: 272 ARRLRGSLRARDIAARWGGEEFLVVLHGADPAMAEALAERVRAATEAHPFRVGQDP-IRV 330

Query: 219 TISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T+S G+A  R  +  I   + RAD ALY AK  GRNRV
Sbjct: 331 TVSIGVAILREDEHGIEPALQRADAALYAAKSDGRNRV 368


>gi|95929313|ref|ZP_01312057.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95134811|gb|EAT16466.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 398

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 102/217 (47%), Gaps = 23/217 (10%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
            + L  I    LS V   + + +L G +   IL  L   + R   L+  D L+GL +  A
Sbjct: 185 LWALLLICTAQLSDVQARVPVVVLHGLL---ILIVLVSVFERSYTLAFRDELTGLPSRRA 241

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLG 176
           F+  +   +   S+   DID+FK++ND  GH VGD+V+  ++ +L  V  G   F  R G
Sbjct: 242 FLDFVNRRSSGYSLAIVDIDHFKKVNDTHGHDVGDQVLKRVAGRLAAVSNGGKAF--RYG 299

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-----------------PSIHIT 219
           GEEF         +      + LR+ I ++   +                    PS+ +T
Sbjct: 300 GEEFVVLFYRRDVERVNDALDLLRQSIADTPFVLRQKPRPEKRPRRVVATKDRQPSLRVT 359

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +S G++       +  +I RADQALY AKK+GRNRVV
Sbjct: 360 VSIGVSHWHKGADLDGVIKRADQALYKAKKTGRNRVV 396


>gi|332531216|ref|ZP_08407129.1| GGDEF family regulator [Hylemonella gracilis ATCC 19624]
 gi|332039323|gb|EGI75736.1| GGDEF family regulator [Hylemonella gracilis ATCC 19624]
          Length = 310

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 87/161 (54%), Gaps = 9/161 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           QL+  D L+GL N     + LG+   +       L++   D+D+FKQ+ND +GH VGDKV
Sbjct: 139 QLAITDPLTGLFNRRHVFARLGALFHQARDLRYPLTLAVIDLDHFKQVNDRYGHSVGDKV 198

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   + +          VGR+GGEEF      ++ Q A  +   LR+ +  S + + + P
Sbjct: 199 LVHFAQKFEARRRPLDLVGRIGGEEFLMVLPNTTVQGARQVLARLREDLTQS-LPVPAHP 257

Query: 215 SIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNR 254
            + ++ S+G+A+   ++  +  +Y RAD+ALY AK  GR R
Sbjct: 258 DLALSFSSGLAQMNAQDTEAATLYQRADRALYGAKHEGRAR 298


>gi|327484743|gb|AEA79150.1| GGDEF family protein [Vibrio cholerae LMA3894-4]
          Length = 473

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 21/170 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  ++  D L+G  N   F       IS     +  LS+   D+D+FKQ+NDN+GHP 
Sbjct: 312 KRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPA 371

Query: 151 GD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GD    +V+A     +  V GT   + R GGEEF       ++QEA      +R  I   
Sbjct: 372 GDLVLQRVVALCQRHIAQV-GT---LCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMH 427

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               +S P   +T+S G+ +    E +  +  RADQA+Y AK  GRN+VV
Sbjct: 428 ----ASQP--QVTVSVGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 471


>gi|256393116|ref|YP_003114680.1| diguanylate cyclase [Catenulispora acidiphila DSM 44928]
 gi|256359342|gb|ACU72839.1| diguanylate cyclase [Catenulispora acidiphila DSM 44928]
          Length = 349

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 80/162 (49%), Gaps = 12/162 (7%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+R D L+GL+NH  F  +LG            +S++  DID FK +ND +GHP GD V+
Sbjct: 168 LARADPLTGLVNHRGFEEALGRAQVRHSRDGRPVSLLAIDIDRFKDVNDTWGHPAGDAVL 227

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L+  L   F +   + R+GGEEFA         EA   A  L   +    +       
Sbjct: 228 QELAKLLAAYFRSGDVIARVGGEEFAVLISDCGVHEALRRAQGLLGRVREDSLTWDH--- 284

Query: 216 IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             IT+S G+A    + E    +   AD+ALY AKK+GR+ VV
Sbjct: 285 -RITVSIGVATVPDQVEDFDGLHRSADRALYRAKKAGRDGVV 325


>gi|163749575|ref|ZP_02156822.1| GGDEF family protein [Shewanella benthica KT99]
 gi|161330685|gb|EDQ01622.1| GGDEF family protein [Shewanella benthica KT99]
          Length = 594

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 94/176 (53%), Gaps = 11/176 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHS--------AFISSLGSYNEKLSIVFFDIDYFKQIND 144
           + +   +  QL++ D L+G+ N          +FI +  S  E  S++ FD+D+FK+IND
Sbjct: 403 MTVQKRKYKQLAQYDALTGIFNRGTAQNIAEYSFIKT-ASKREMFSVIMFDLDHFKRIND 461

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH  GD ++  +++ +     +     R G EEFA     + E +A I+A + R +I+
Sbjct: 462 NYGHGTGDWILKKVAEVINKASRSDDVFARFGSEEFALFLPNTDEAKAKIMAEEYRGLIQ 521

Query: 205 NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +    SG +  IT S G++     +  +  +++RAD A+Y +K+ GRN V  + 
Sbjct: 522 SIETRF-SGHNFAITASFGVSTSSEDDLSLDPLLHRADIAMYHSKEQGRNCVTLYK 576


>gi|269963645|ref|ZP_06177968.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831658|gb|EEZ85794.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 480

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 93/171 (54%), Gaps = 9/171 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           ++L ++  ++ +L+  D L+ L N    I   ++L +    L+++ FDID FK IND FG
Sbjct: 297 RQLTLANQQLFELTLTDPLTKLYNRRHLIERLATLSTVKRDLTVMVFDIDDFKSINDQFG 356

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+ I  +++    +    + + R+GGEEFA  ++  S +EA  LA ++   +    
Sbjct: 357 HLAGDQAIVAVANAAKSITDEKVTLARIGGEEFALVSVSLSAEEAQTLACEICTHVNQMP 416

Query: 208 INISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           I +  G +IH++IS G A   +  + P    +  ADQ +Y  K SG+NR V
Sbjct: 417 IPL-DGQNIHVSISLGCAYYPKFDETP---SLQDADQLMYRGKASGKNRAV 463


>gi|291615259|ref|YP_003525416.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans
           lithotrophicus ES-1]
 gi|291585371|gb|ADE13029.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans
           lithotrophicus ES-1]
          Length = 671

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 87/164 (53%), Gaps = 8/164 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + + ++ID L+ L N   F       I     Y + L+++  D+D+FK IND +GH VGD
Sbjct: 504 LERRAQIDALTSLNNRRHFYELAEQEILRTKRYGKPLALMMLDVDHFKDINDTYGHHVGD 563

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  L    +        +GRLGGEEFA     ++  +A   A  LR  +    + +  
Sbjct: 564 TVLQTLGAVCLQTMREIDIIGRLGGEEFAILLPEATAAQAFDAAERLRLAVAAIAMPLEQ 623

Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
           G ++  TIS G+     K+  I+ ++ RAD+A+Y AK+SGRNRV
Sbjct: 624 GQTLSFTISIGVTGLVAKDSDIADMLKRADEAMYQAKRSGRNRV 667


>gi|163847512|ref|YP_001635556.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222525361|ref|YP_002569832.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus sp. Y-400-fl]
 gi|163668801|gb|ABY35167.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222449240|gb|ACM53506.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus sp. Y-400-fl]
          Length = 940

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NHS         ++      + L++   DID+FKQ+ND +GH VGD+V+  L+
Sbjct: 384 DGLTGLFNHSVTQDLLMREVARARRNAQPLAVALLDIDHFKQVNDRYGHQVGDRVLKSLA 443

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         +GR GGEEF      +    AA++ + LR+   + + +   G  + +T
Sbjct: 444 RLLRQRLRATDVIGRYGGEEFLIVMPDTRAGSAAMVIDSLRERFAHIE-HQREGEPLRVT 502

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            SAG+AE         +I +AD ALY AK +GRN+VV
Sbjct: 503 FSAGVAEWHMGLDAGALIEKADAALYQAKHNGRNQVV 539


>gi|257481810|ref|ZP_05635851.1| diguanylate cyclase, putative [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|330986814|gb|EGH84917.1| diguanylate cyclase [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331009445|gb|EGH89501.1| diguanylate cyclase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 686

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIV--FFDIDYFKQINDNFGHPVGDKV 154
           Q + ID L+GL N +A+   L        +EK S++    D+D+FK+IND +GH  GDKV
Sbjct: 524 QKALIDPLTGLPNRAAWGERLEQEMTRWQHEKNSLLVCILDLDHFKRINDGYGHLAGDKV 583

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +++       +  F+ R GGEEF      +       L ++LR  +E+   +   G 
Sbjct: 584 LKIVANVFRKRLRSDDFLARFGGEEFVMLLPATPPGTGLTLLDELRAAVESCPFHFK-GE 642

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT+S G+      E   T I RADQALY AK++GRNRV
Sbjct: 643 RVTITVSIGVTAFRTAERSDTAIKRADQALYKAKENGRNRV 683


>gi|242278405|ref|YP_002990534.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
 gi|242121299|gb|ACS78995.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
          Length = 394

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 99/188 (52%), Gaps = 21/188 (11%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVF 133
           +LG     +  +L  +++ + +++  D L+GL N   F S +         YN  L I  
Sbjct: 208 MLGRTLDDMRTKLDKNFSLMREMAVTDELTGLPNRRGFHSEVEKLLWLSDRYNHPLIIAL 267

Query: 134 FDIDYFKQINDNFGHPVGDKVIA----FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           FDIDYFK IND+FGH VGD+V+     F+S +   +  T +F  R+GGEEF      +S 
Sbjct: 268 FDIDYFKTINDSFGHAVGDEVLKNFAEFISGR---IRKTDLF-ARVGGEEFVLVMPETSR 323

Query: 190 QEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAK 248
            +   L + LR      ++++   P  + +T+S G  +    + +  ++  AD+ALY AK
Sbjct: 324 DDGHKLLDLLR-----HEVSVHEFPHGNTVTVSVGYTDNSGSDTLEELMDIADKALYKAK 378

Query: 249 KSGRNRVV 256
           + GR+R++
Sbjct: 379 QDGRDRII 386


>gi|206890901|ref|YP_002248537.1| diguanylate cyclase [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742839|gb|ACI21896.1| diguanylate cyclase [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 252

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 111/215 (51%), Gaps = 12/215 (5%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF-ISYNRISQLSRID 107
           F+F IG   +   E+IL  +L+  I S+T++LL   I    ++++   S+ ++      D
Sbjct: 31  FIFIIG--GYEKKEFILAISLA-GISSLTVNLLSAKIMKRKMEKIIHYSFEKVETQLYFD 87

Query: 108 CLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+ + N +  I+ L         + + LS+   DID FK INDN+GH  GD+V+  ++ 
Sbjct: 88  ELTSVYNRTTGINRLMEEMARSKRHKQHLSVAMLDIDNFKSINDNYGHLAGDRVLNHIAL 147

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
           Q+  +      V R GGEEF      + E +A +    +R+ I    + I +G  ++IT+
Sbjct: 148 QIKNLLRASDVVSRYGGEEFLIILPETDEIKAFMALERVRENIARRPVKIGNG-KLNITV 206

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S GI E    +  +  I RAD AL  AK+ G+NR+
Sbjct: 207 SIGITEVDINDSSTDAIQRADLALLKAKRDGKNRI 241


>gi|183179475|ref|ZP_02957686.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|183012886|gb|EDT88186.1| GGDEF family protein [Vibrio cholerae MZO-3]
          Length = 512

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 21/170 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  ++  D L+G  N   F       IS     +  LS+   D+D+FKQ+NDN+GHP 
Sbjct: 351 KRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPA 410

Query: 151 GD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GD    +V+A     +  V GT   + R GGEEF       ++QEA      +R  I   
Sbjct: 411 GDLVLQRVVALCQHHIAQV-GT---LCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMH 466

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               +S P   +T+S G+ +    E +  +  RADQA+Y AK  GRN+VV
Sbjct: 467 ----ASQP--QVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 510


>gi|167646710|ref|YP_001684373.1| diguanylate cyclase [Caulobacter sp. K31]
 gi|167349140|gb|ABZ71875.1| diguanylate cyclase [Caulobacter sp. K31]
          Length = 352

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 85/175 (48%), Gaps = 21/175 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ + +  D L+ L N  AF   L             + +   DID+FK  ND +GH  
Sbjct: 173 EQVRRDATTDGLTNLANRKAFDDELDRACSEADEAGTTICLAVLDIDHFKGFNDTWGHQT 232

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI-------- 202
           GD+VI +++  +  V   P F  R GGEEF   A+    + A+I+A  L +I        
Sbjct: 233 GDQVIRYVASVIGRVAAPPRFAARYGGEEF---AMIFPRESASIVAGTLEEIRVEVSSRM 289

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++    N   G    ITIS+G AER   E   +++ RAD ALY +K+ GRNRV  
Sbjct: 290 LKRRSTNEDLGA---ITISSGFAERRPGETGHSVMERADAALYTSKRGGRNRVTA 341


>gi|111223426|ref|YP_714220.1| putative two component sensor serine/threonine kinase [Frankia alni
            ACN14a]
 gi|111150958|emb|CAJ62664.1| Putative two component sensor serine/threonine kinase [Frankia alni
            ACN14a]
          Length = 1826

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 96/185 (51%), Gaps = 16/185 (8%)

Query: 85   ISGSILKELFISYN------RISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSI 131
            I+ +I+ ++ I Y       ++ +L+  D L+GL +   F+       ++  +    +  
Sbjct: 1639 IAQTIIDQVVIGYQNAWLFEKVQRLAATDQLTGLASRRHFLERADHLYAAQAAAGRPVCA 1698

Query: 132  VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
               DID+FK++ND +GH VGD+V+  ++ ++   F     +GR+GGEEFA    G     
Sbjct: 1699 AMVDIDHFKRVNDAYGHLVGDEVLTEVARRIRRAFRDDDLIGRIGGEEFAVLMSGPV-TT 1757

Query: 192  AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250
            A  L   LR  +    I+ S+GP + I +S G+  R   +  +  ++ RAD ALY AK  
Sbjct: 1758 AESLGQRLRNALARDPIDTSAGP-LDIRLSVGLTARSPADGSLRDLLARADAALYEAKHG 1816

Query: 251  GRNRV 255
            GR+RV
Sbjct: 1817 GRDRV 1821


>gi|13470925|ref|NP_102494.1| hypothetical protein mlr0754 [Mesorhizobium loti MAFF303099]
 gi|14021668|dbj|BAB48280.1| mlr0754 [Mesorhizobium loti MAFF303099]
          Length = 428

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 99/196 (50%), Gaps = 9/196 (4%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-- 123
            E LSL+++  +++ + G +S ++ +     ++R + L+  D L+GLLN  A     G  
Sbjct: 231 AEELSLIVVIASMTGI-GALSLALNQGRLARHHRRNALT--DPLTGLLNRRALFDMHGHV 287

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                 ++V FD+D FK IND FGH  GD+V+   + +L           R+GGEEFA  
Sbjct: 288 PVGAFTAVVVFDLDNFKAINDEFGHAAGDEVLKVFARELAGNLRQTDIAARMGGEEFALV 347

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRAD 241
              +  +     A  +R       I   +G S+  T+SAG A    KE +S   ++  AD
Sbjct: 348 LKRTLPETVEDAAERIRTAFATRLIETETG-SLRCTVSAGFAF-GSKEGLSFDKVLSAAD 405

Query: 242 QALYVAKKSGRNRVVC 257
           +ALY AK+ GRNRV  
Sbjct: 406 KALYDAKRGGRNRVTA 421


>gi|148548848|ref|YP_001268950.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas putida
           F1]
 gi|148512906|gb|ABQ79766.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida F1]
          Length = 796

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 99/206 (48%), Gaps = 14/206 (6%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           P  GL ++  E  +  +     +L  GY++   + +L      +  LS  D L+G+ N  
Sbjct: 593 PRAGLRWVRGEA-TPEVGEQGCTLWHGYLTD--ISDLKGVEEELRALSVTDSLTGIHNRR 649

Query: 117 AFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            F   L    E+       L+++  DID+FK+IND FGH VGD+V+  L  ++       
Sbjct: 650 YFQERLKIELERAQRDGLPLAVIMLDIDHFKRINDRFGHAVGDRVLRSLCQRIAQRLRRT 709

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               RLGGEEF     GS   +A +LA +L + + N  +         +T S G+A    
Sbjct: 710 DVFCRLGGEEFMVLCPGSDADQARLLALELWQGVRNVPVEGVG----QVTASFGVAGWRS 765

Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255
            E    ++ RAD  +Y AK++GR+RV
Sbjct: 766 GEGADALLLRADAGVYAAKQAGRDRV 791


>gi|313497514|gb|ADR58880.1| Diguanylate cyclase [Pseudomonas putida BIRD-1]
          Length = 357

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 16/188 (8%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
            L LG++   +  +L     R+S LS  D L+GL NH A+         +         I
Sbjct: 159 PLALGWVCYQLAIKLGDHKRRLSALSLTDSLTGLFNHGAWKDLLQLKFQACKQQQGHAVI 218

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              DID+FK IND FGH VGD V+  LS +L          GR GG+EF      +SE +
Sbjct: 219 ALIDIDHFKTINDTFGHVVGDCVLRQLSAELRRSLREGDQAGRYGGDEFCVILPETSEAQ 278

Query: 192 AAILANDLRKII---ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247
           A      LR+ +    N Q+     P + I++S G++    + E     + +AD+ALY+A
Sbjct: 279 ACQAMERLRERVSSYRNPQL-----PHLRISLSIGLSPFEANLESPEHWLEQADKALYIA 333

Query: 248 KKSGRNRV 255
           K +GR++V
Sbjct: 334 KHAGRDQV 341


>gi|323529489|ref|YP_004231641.1| diguanylate cyclase [Burkholderia sp. CCGE1001]
 gi|323386491|gb|ADX58581.1| diguanylate cyclase [Burkholderia sp. CCGE1001]
          Length = 371

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 87/175 (49%), Gaps = 21/175 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ QL   D L+GL N   F   L         Y+  L+ +F D+D FK+IND +GH  
Sbjct: 188 ERLKQLGMTDPLTGLSNRRYFDERLREELMRAARYSVPLACLFIDVDSFKRINDTYGHQT 247

Query: 151 GDKVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           GD+ +A ++    Q V +  T   V R GGEEF AA L     +A  +A  +R  +E   
Sbjct: 248 GDRALAAVAACVRQQVRLGDT---VARYGGEEF-AALLQGDRADAQTVAERVRAAVEKLA 303

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTI------IYRADQALYVAKKSGRNRV 255
           +    G  I +T+S G+A R     P   +      +  AD+A+Y AK +GRNRV
Sbjct: 304 LLDDDGERIALTVSIGVAARTVSGSPADALALGRAMMDEADRAMYQAKHNGRNRV 358


>gi|222834177|gb|EEE72654.1| predicted protein [Populus trichocarpa]
          Length = 308

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 84/159 (52%), Gaps = 7/159 (4%)

Query: 107 DCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ LLN  AF  +        +   +S++  DID+FK+IND++GH  GD+V+  ++  
Sbjct: 143 DSLTNLLNRRAFQEAAELRLADPHMAPISVLIGDIDHFKRINDSWGHDCGDRVLQAVAQT 202

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L         V R GGEEF    + ++ QEA  +A  +R  +      +++G    +TIS
Sbjct: 203 LQQHVRNDDLVCRFGGEEFVLLLMRTTPQEAERVAQRIRAQLSADGYVLAAGQ--RVTIS 260

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            GIA       ++  + RAD  LY AK++GR+RV   +D
Sbjct: 261 FGIAPVAANTALTDALTRADGLLYAAKQAGRDRVHVATD 299


>gi|298485208|ref|ZP_07003301.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298160196|gb|EFI01224.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 686

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIV--FFDIDYFKQINDNFGHPVGDKV 154
           Q + ID L+GL N +A+   L        +EK S++    D+D+FK+IND +GH  GDKV
Sbjct: 524 QKALIDPLTGLPNRAAWGERLEQEMSKWQHEKNSLLVCILDLDHFKRINDGYGHLAGDKV 583

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +++       +  F+ R GGEEF      +       L ++LR  +E+   +   G 
Sbjct: 584 LKIVANVFRKRLRSDDFLARFGGEEFVMLLPATPPGTGLTLLDELRTAVESCPFHFK-GE 642

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT+S G+      E   T I RADQALY AK++GRNRV
Sbjct: 643 RVTITVSIGVTAFRTAERSDTAIKRADQALYKAKENGRNRV 683


>gi|293603220|ref|ZP_06685653.1| GGDEF domain protein [Achromobacter piechaudii ATCC 43553]
 gi|292818451|gb|EFF77499.1| GGDEF domain protein [Achromobacter piechaudii ATCC 43553]
          Length = 266

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 7/164 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGD 152
           + + S  D L+GLLN  A +  +    E+ S       +   D+D+FK +ND +GH  GD
Sbjct: 97  LEETSSRDPLTGLLNRRALMDMIKQEVERASRSGESFIVAMLDVDHFKAVNDRYGHETGD 156

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  L+  L          GR GGEEF      +    A  + + L   +    I +  
Sbjct: 157 RALVELAGVLRQSLRGGDLCGRWGGEEFLVMLPNTQPDAAQGVMDRLVGAVRGLAIAVGE 216

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              + +T+S G+A+    E  S  + RADQALY+AK+ GR+RV 
Sbjct: 217 NDVLRLTVSIGMAQHQLGETFSETLSRADQALYLAKQDGRDRVA 260


>gi|261250949|ref|ZP_05943523.1| GGDEF family protein [Vibrio orientalis CIP 102891]
 gi|260937822|gb|EEX93810.1| GGDEF family protein [Vibrio orientalis CIP 102891]
          Length = 338

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 5/172 (2%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           +++L      + Q +  D L+ L N  AF   +++L    +K+ ++  DID+FK  ND +
Sbjct: 165 IQQLKSQLAEVQQDALFDSLTSLYNRRAFDGDLNTLCRSEQKMCLILADIDHFKSFNDTY 224

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD VI  ++ ++ +     +   R GGEEFA      S + A   A  LR+ IE  
Sbjct: 225 GHLFGDTVIKAIARRIQLSCRDGIHAYRFGGEEFALIVPNKSLRIARQYAESLRRAIEKL 284

Query: 207 QIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            I    +S    +ITIS G+AE    E  +++I RAD+ LY AK+ GRNRV+
Sbjct: 285 SIKDRRTSEQIGNITISLGVAELQPGETANSLIERADKLLYEAKELGRNRVM 336


>gi|167622059|ref|YP_001672353.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167352081|gb|ABZ74694.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 485

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 8/165 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  ++  D L+G  N  AF     +        +  +S++  DID+FK +ND++GH +G
Sbjct: 319 KLELMASTDKLTGAANRQAFEEHFANSLTRSVLDSRPMSLLLMDIDHFKLVNDSYGHNIG 378

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D VI  +S  L         + R GGEEF       S  +++ LA  +R+++    + ++
Sbjct: 379 DLVIQTVSHMLKSQLKEDDLLCRWGGEEFLILLPNCSLSQSSELAERIRELVAGRLLRVN 438

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G  I++T+S G A+    E    +I R D ALY AK+ GRNRVV
Sbjct: 439 -GCEINVTLSCGAAQHRASETAEDLINRVDIALYQAKEQGRNRVV 482


>gi|149377630|ref|ZP_01895368.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter algicola DG893]
 gi|149358103|gb|EDM46587.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter algicola DG893]
          Length = 376

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 8/162 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           ++ D L+GL N       L +  ++        S++  DID FK +NDN GH VGD+ I 
Sbjct: 211 AKHDALTGLANRREAHEQLETEYQRYLRNSRVFSVLLMDIDLFKSVNDNHGHQVGDETIV 270

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++  L         + R GGEE+      +   EA   AN +R+ I ++ I    G SI
Sbjct: 271 MVARTLQEHSRKVDTLARWGGEEYLVLLPETDTFEAVQTANRIRQTIASTPIETQGG-SI 329

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + TIS G+A     E +  ++ RAD+ALY AK  GRN V  F
Sbjct: 330 NATISVGVATIQGAESVDRLLQRADEALYRAKTLGRNMVCDF 371


>gi|37679687|ref|NP_934296.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37198432|dbj|BAC94267.1| GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 398

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 80/164 (48%), Gaps = 9/164 (5%)

Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + ++S  D L+G  N         A ISS     + L  +  DID+FK +ND +GH  GD
Sbjct: 234 LQEMSLKDNLTGFFNRHGLEQKLPALISSAQHRQQPLIAMMCDIDHFKLVNDTYGHQEGD 293

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++   ++ +           R GGEEF           A  LA  +R  IE SQ     
Sbjct: 294 IILQRCAEAIRAQLPQQHLAFRYGGEEFLIILSQYELVRAKQLAEAIRMTIEQSQF--VQ 351

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            P  H+T+S G+ E    + + +++ RADQALY+AK  GRN+VV
Sbjct: 352 LPERHLTMSFGLTELSTLDNVESMVKRADQALYLAKSQGRNQVV 395


>gi|254226957|ref|ZP_04920522.1| GGDEF family protein [Vibrio cholerae V51]
 gi|125620525|gb|EAZ48894.1| GGDEF family protein [Vibrio cholerae V51]
          Length = 469

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 92/170 (54%), Gaps = 6/170 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
           ++L  +  ++S L++ D L+ + N  +F   L +   +   L+++ FDID FK IND FG
Sbjct: 297 QQLEEANQKLSYLAKTDSLTDIANRRSFFEYLEAEQTRSGSLTLMVFDIDDFKTINDRFG 356

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD  I F+   +     +  +  R+GGEEFA  A G + +E+  LA  + + +   +
Sbjct: 357 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 416

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             +++  S+ +TIS G A       P S  ++ AD  +Y  K++G+N+VV
Sbjct: 417 WVVNAQHSLSLTISLGCAFYLRPARPFS--LHDADSLMYEGKRNGKNQVV 464


>gi|85711554|ref|ZP_01042612.1| serine/threonine kinase with two-component sensor domain [Idiomarina
            baltica OS145]
 gi|85694706|gb|EAQ32646.1| serine/threonine kinase with two-component sensor domain [Idiomarina
            baltica OS145]
          Length = 1632

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 9/165 (5%)

Query: 99   RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151
            ++  L+  D L+ L N   F+S L   ++       + ++V  DID FK IND +GH  G
Sbjct: 1464 QLQHLANTDALTQLPNRRFFMSELQQSHDLFKRKGHQAAVVMMDIDSFKVINDRYGHSAG 1523

Query: 152  DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            D+V+  L+ Q            R+GGEEFA     +   +   +A  LR+ IE   I + 
Sbjct: 1524 DEVLKALAKQFNHAVRMNDIAARIGGEEFALLIRDADMPQVLAIAERLRQAIELDSI-VH 1582

Query: 212  SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            SG  +  T+S GI+      +   +I+ RAD+ALY AK  G+NRV
Sbjct: 1583 SGEEVDYTVSIGISLFETQDDEFESILNRADRALYRAKSLGKNRV 1627


>gi|323948341|gb|EGB44328.1| diguanylate cyclase domain-containing protein [Escherichia coli
           H120]
          Length = 564

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQLLADRRLYLA 550

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 551 KQAGRNR-VCASD 562


>gi|304406093|ref|ZP_07387750.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9]
 gi|304344677|gb|EFM10514.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9]
          Length = 586

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 95/203 (46%), Gaps = 36/203 (17%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQIN 143
           +EL  +  ++ Q++  D L+G  N    +  + S   KL+       I+ FDID FK++N
Sbjct: 374 EELSTANRKLEQMAVTDGLTGCFNRRYLMGKIESELPKLAEHHASFAIMLFDIDLFKKVN 433

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGH  GD V+   + ++  + G    + R GGEEF       + + AA +A  +R  I
Sbjct: 434 DTFGHLAGDAVLVRTAQKIQELIGPHDILARYGGEEFTVFMPNVTSEHAANMAEKIRDEI 493

Query: 204 ENSQINIS--------------------SGPSIHITISAGIAERCHKEP---------IS 234
             +++ IS                    +G  + +T+S G+      +P         + 
Sbjct: 494 ARNEVVISEQHLVGSHHKSEPMSTLALLNGKKLAVTVSMGVVVEHKLKPSKMMDPANYLR 553

Query: 235 TIIYRADQALYVAKKSGRNRVVC 257
            ++  AD+ALY AK +GRN+V+C
Sbjct: 554 QLLAVADEALYEAKNAGRNQVIC 576


>gi|294338710|emb|CAZ87042.1| hypothetical protein; putative membrane protein; putative GGDEF and
           PAS/PAC domains [Thiomonas sp. 3As]
          Length = 530

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 89/162 (54%), Gaps = 7/162 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           ++++++ D L+GL N   F     +      ++  S++  D D+FK++ND  GH VGD V
Sbjct: 362 LTRMTQTDALTGLYNRRGFFERANALLQSARDQAPSLLLIDADHFKRVNDAHGHAVGDTV 421

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  L++++         +GR+GGEEFA     +S + A  LA+ +R  +    + I  G 
Sbjct: 422 LVQLANRMNAALREGDVIGRIGGEEFAVFLPATSLENAYELADRIRLSVSRHALRI-QGL 480

Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + +T+S G+   +  +  +   + RAD A+Y AK++GRNRV
Sbjct: 481 RVPMTLSIGVTVLQLGESTLEAALGRADTAMYQAKQNGRNRV 522


>gi|240140104|ref|YP_002964581.1| putative membrane protein, diguanylate cyclase (GGDEF) domain
           [Methylobacterium extorquens AM1]
 gi|240010078|gb|ACS41304.1| putative membrane protein, diguanylate cyclase (GGDEF) domain
           [Methylobacterium extorquens AM1]
          Length = 621

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 14/182 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           +E+      + +LS  D L+GL N  A  S L           +   ++  D+D+FK  N
Sbjct: 170 REVVQRGEELFRLSTTDVLTGLANRRAIDSVLQELWLANINSGQAFGVILIDVDFFKLYN 229

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMF-VGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD  +A L + +        + +GR GGEEFAA     S ++    A ++R+ 
Sbjct: 230 DRYGHQRGDSCLAALGEAMRGAAEKRRYAIGRFGGEEFAALFQADSAEQVLEFAEEVRQA 289

Query: 203 IENSQINISS--GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +E  QI  ++   P  H+T+S G    A+    +P    I  AD ALYVAK+ GRNR   
Sbjct: 290 VEALQIPHAARRDPLSHVTVSIGAAFSADVAEDKP-ERAISAADDALYVAKEEGRNRARI 348

Query: 258 FS 259
           F+
Sbjct: 349 FN 350


>gi|207724264|ref|YP_002254661.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           MolK2]
 gi|206589480|emb|CAQ36441.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           MolK2]
          Length = 347

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 12/178 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           F +  +++  +  D L+G L    F       +     + E L  ++ D+D+FK IND +
Sbjct: 163 FAAEAQLADRANTDHLTGRLARQRFFELGAFAVERARHHGEPLCALYLDVDHFKSINDAW 222

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+ +  LSD+L  V       GRLGG+EFA    G +  EA  +   L+  +   
Sbjct: 223 GHAAGDEALVALSDELAGVLRPHDLFGRLGGDEFAVLLPGCNLAEALAVVERLKTAVAAH 282

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +      P   +T+S G A    ++ ++ ++  AD AL  AK+ GRNRV   S   N+
Sbjct: 283 R-----HPMGRLTVSVGAAPLRPRQELAHLLADADLALIEAKRRGRNRVCVSSGSAND 335


>gi|153829938|ref|ZP_01982605.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|148874573|gb|EDL72708.1| GGDEF family protein [Vibrio cholerae 623-39]
          Length = 512

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 21/170 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  ++  D L+G  N   F       IS     +  LS+   D+D+FKQ+NDN+GHP 
Sbjct: 351 KRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPA 410

Query: 151 GD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GD    +V+A     +  V GT   + R GGEEF       ++QEA      +R  I   
Sbjct: 411 GDLVLQRVVALCQRHIAQV-GT---LCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMH 466

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               +S P   +T+S G+ +    E +  +  RADQA+Y AK  GRN+VV
Sbjct: 467 ----ASQP--QVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 510


>gi|156741149|ref|YP_001431278.1| PAS/PAC sensor-containing diguanylate cyclase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232477|gb|ABU57260.1| diguanylate cyclase with PAS/PAC sensor [Roseiflexus castenholzii
           DSM 13941]
          Length = 325

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 86/163 (52%), Gaps = 10/163 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISS--------LGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           R+ +L+ +D L+G+ N   FI S        L  Y     ++  DID+FK IND FGH V
Sbjct: 133 RLRELALLDPLTGIGNRR-FIESNTHSRLEELRRYGWPFGVILADIDHFKAINDTFGHLV 191

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  ++  L         VGR GGEEFA  A   S     +LA  LR ++E S + I
Sbjct: 192 GDDVLKMVAHTLAHNVRAFDAVGRWGGEEFAIVAQNVSAGMLLVLAERLRALVEQSTLFI 251

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +  ++H+TIS G A     +    ++ RAD  LY +K++GRN
Sbjct: 252 GA-RNVHVTISLGAAIAHPDDTPLGLLDRADHLLYQSKQNGRN 293


>gi|17548619|ref|NP_521959.1| putative transmembrane protein [Ralstonia solanacearum GMI1000]
 gi|17430867|emb|CAD17549.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum GMI1000]
          Length = 488

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 105/234 (44%), Gaps = 21/234 (8%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           + +F+A      +I+  +     + G+         LV++   ++L + Y+    L+   
Sbjct: 263 YPLFVAVGTATEDIYANWKARAWWIGM---------LVVLFNVVTLAMAYLFAQHLERRI 313

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147
               R ++L+  D L+GL N  A    L +         + LS++  D+D+FK  ND++G
Sbjct: 314 EEQRRHAELAATDALTGLANRRALDERLDAEWRRAARERQPLSVLMIDVDHFKAYNDHYG 373

Query: 148 HPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           HP GD  +  ++  +      P     R GGEEF     GS    A ++A  +R+ I   
Sbjct: 374 HPDGDAALQAVARCIQANLRRPGDLAARYGGEEFCVVLPGSDLDSANVVAETIRRAILVL 433

Query: 207 QINISSGPSIHITISAGIAE---RCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
            I  +   S  +T+S G A        EP  +T+   AD  LY AK SGRNR +
Sbjct: 434 NIPHARSASTALTVSIGAASGTPASSGEPRAATLTKAADAQLYRAKTSGRNRTM 487


>gi|237654503|ref|YP_002890817.1| response regulator receiver modulated diguanylate cyclase [Thauera
           sp. MZ1T]
 gi|237625750|gb|ACR02440.1| response regulator receiver modulated diguanylate cyclase [Thauera
           sp. MZ1T]
          Length = 634

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 93/172 (54%), Gaps = 11/172 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           EL IS  R++  +  D L+ L N  + +++L         + + LS++  DID+FK+IND
Sbjct: 452 ELAISNRRLAHAAMTDLLTNLPNRRSGMNALAKAWAASSRFEQPLSVMMLDIDHFKRIND 511

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH VGD V+  ++  +         + R+GGEEF      +  + A   A  LR+++E
Sbjct: 512 SHGHAVGDTVLRDVAQAIQQSARKDDSMCRMGGEEFLVICPNTDLKAAVQAAERLRRMVE 571

Query: 205 NSQINISSGPS-IHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNR 254
             ++ I +G + I  ++S G+A R         ++  AD+ALY AK++GRNR
Sbjct: 572 --RLRIQAGETEIQTSVSIGVATREVGMTETDALVNAADRALYRAKQAGRNR 621


>gi|221211969|ref|ZP_03584947.1| diguanylate cyclase [Burkholderia multivorans CGD1]
 gi|221168054|gb|EEE00523.1| diguanylate cyclase [Burkholderia multivorans CGD1]
          Length = 525

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 92/185 (49%), Gaps = 12/185 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQ 141
           L++      R++ L+R D L+GL N  A  + L     +L        S++F D D FKQ
Sbjct: 333 LRDNLRKQQRLTDLARTDPLTGLHNRRALDAMLVDACARLQRGDGGSLSVLFIDADRFKQ 392

Query: 142 INDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND +GH  GD  + FL+  +   V        R GGEEF A    +  + A  +A+ +R
Sbjct: 393 YNDRYGHAHGDTALRFLAACIRAHVCRRGDVAARYGGEEFVAVLPDTDARGAMQIADAIR 452

Query: 201 KIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + +E ++++  + P    T+S G A   H        +  RAD+ALY AK  GRNR VC 
Sbjct: 453 RDVERNRLDGFADPVPAFTVSIGCATADHARAASADALARRADRALYTAKHRGRNR-VCH 511

Query: 259 SDIEN 263
           +D+E 
Sbjct: 512 ADVET 516


>gi|258516235|ref|YP_003192457.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779940|gb|ACV63834.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 550

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 103/199 (51%), Gaps = 11/199 (5%)

Query: 73  IISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--- 128
           II   + L+  +++G I   E  I  + I   +R D L+GL NH        + +E+   
Sbjct: 151 IIFTGVMLISAWLTGGITSIEREIREHLIDMANR-DGLTGLYNHRFLQEYFKTLSEETNN 209

Query: 129 ----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
               +S++ FDID+FK  ND FGH  GD+++  +S+ +      P  V R GG+EF    
Sbjct: 210 TVRNISLILFDIDHFKYFNDTFGHTAGDEILLNVSNIVKNHISYPSIVARYGGDEFCILL 269

Query: 185 LGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQ 242
           +      A  LA+++ + +E   I N    P+  I+I+AGIA    H +    +I  ADQ
Sbjct: 270 IDYDLSSAYKLASEMSEKVEQLVIKNTEKLPNGKISITAGIANYPSHTKHCEKLIDLADQ 329

Query: 243 ALYVAKKSGRNRVVCFSDI 261
           ALY AKK+ +N+V  + ++
Sbjct: 330 ALYKAKKTSKNKVELYFNV 348


>gi|17231091|ref|NP_487639.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17132732|dbj|BAB75298.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 344

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/186 (34%), Positives = 95/186 (51%), Gaps = 17/186 (9%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           + K+L  +   +  L+ +D L+GL N   F + L +           LS++  DIDYFK 
Sbjct: 160 VYKQLEAANMALQHLANVDGLTGLANRRRFDNYLNTQWINLVQEGAPLSLILCDIDYFKF 219

Query: 142 INDNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            ND +GHP GD    KV A LS +          V R GGEEFA     +  + A  +A+
Sbjct: 220 YNDQYGHPTGDICLQKVGAVLSYK---AQKHQDLVARYGGEEFAVVMPYTHAKGAIYVAH 276

Query: 198 DLRKIIENSQI-NISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            ++  + + QI +  S  S HIT+S G+A      +   S +I  AD+ALY AK+SGRNR
Sbjct: 277 AIQTSVRDLQIAHDKSAVSQHITLSMGVATITPTWESSPSDLIAAADKALYKAKESGRNR 336

Query: 255 VVCFSD 260
           +  + D
Sbjct: 337 ICQWED 342


>gi|119386689|ref|YP_917744.1| response regulator receiver modulated diguanylate cyclase
           [Paracoccus denitrificans PD1222]
 gi|119377284|gb|ABL72048.1| response regulator receiver modulated diguanylate cyclase
           [Paracoccus denitrificans PD1222]
          Length = 464

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 15/170 (8%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N    +  L     +       L+++  D+D+FKQ+ND  GHP GD V+A ++
Sbjct: 292 DPLTGLHNRRFALPRLAELAAEAQERQGVLAVMLMDLDHFKQVNDIHGHPAGDAVLAGIA 351

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG---PSI 216
            +L         + R+GGEEF A       + A  +A +LR  +  + I +  G     +
Sbjct: 352 ARLAATLPEGALLARIGGEEFLAVLPDCPARAARRVAENLRHAVMAAPIPLPQGCTAAEL 411

Query: 217 HITISAGIAE---RCHKEPI--STIIYRADQALYVAKKSGRNRVVCFSDI 261
            +TIS G+A+     H  P+    ++  AD+AL  AK SGRNR+V  S +
Sbjct: 412 CVTISVGVAQGHGGPHLPPVDPEALLASADRALLNAKSSGRNRIVMASTV 461


>gi|255655190|ref|ZP_05400599.1| putative signaling protein [Clostridium difficile QCD-23m63]
          Length = 220

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 81/153 (52%), Gaps = 10/153 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ + N  +F      Y  K    ++V  DID FK INDN+GH  GD VI  +++ + 
Sbjct: 73  DGLTNVYNRKSFDIMYEKYRAKDDNFALVMIDIDNFKLINDNYGHKFGDVVIKGITNTIC 132

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
           V+      V R GGEEF+      S +E A + +++R  I N + N      + +TISAG
Sbjct: 133 VMLEQDDKVFRYGGEEFSVLIRNKSGEEVADIVDNIRVAIANKKWN----EDVTVTISAG 188

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +A   H      ++  AD+ LY AK+ GRN+VV
Sbjct: 189 VA---HISDSKDVLEEADKNLYKAKQLGRNKVV 218


>gi|170742550|ref|YP_001771205.1| diguanylate cyclase [Methylobacterium sp. 4-46]
 gi|168196824|gb|ACA18771.1| diguanylate cyclase [Methylobacterium sp. 4-46]
          Length = 384

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 10/171 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDN 145
           ++ KE      R+S LS  D L+G+ N         S   + + +++ FD+D+FK++ND 
Sbjct: 206 ALAKERLEWEQRLSALS--DPLTGVCNRRGLEVRAASLLASGRATLLLFDLDHFKRVNDT 263

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH +GD V+         +      + RLGGEEF  A L  ++  A  +A  +R+ +  
Sbjct: 264 YGHAIGDAVLVGFCAAAQALLPPQAVLARLGGEEF--ACLLPADAAAGPIAETIRRAV-- 319

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +     P + IT+S G A       +  ++ RAD ALY AK+ GR+RVV
Sbjct: 320 AALRPDCEPGLRITVSVGAAR--GGTSLERLLARADAALYEAKRLGRDRVV 368


>gi|83859495|ref|ZP_00953016.1| Putative diguanylate cyclase (GGDEF domain) [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852942|gb|EAP90795.1| Putative diguanylate cyclase (GGDEF domain) [Oceanicaulis
           alexandrii HTCC2633]
          Length = 322

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 110/248 (44%), Gaps = 40/248 (16%)

Query: 47  NIFLFYIGLTPFYGLE--------------YILV-------ENLSLVIISITISLLLGYI 85
           +IFL  I L  F GLE              + +V       + L+  + S     L+  I
Sbjct: 73  DIFLTAIELPDFSGLEACWRVKANPETEHIHTMVLSASGQEDKLAESLDSGADDFLVKPI 132

Query: 86  SGSILKELFISYNRISQLSR-------IDCLSGLLNHSAFISSLGSYNEK-------LSI 131
             + LK    + +RI +L++        D L+G  N   F+ +L   +++        S+
Sbjct: 133 DKNELKARMRAASRIVRLTQRMRAEAETDALTGAYNRRVFMRTLEREHKRALDQALPFSV 192

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  D+D+FK+IND  GH  GD+V+      L  +   P  +GRLGGEEFA    G     
Sbjct: 193 LMVDLDFFKKINDTHGHASGDRVLIKTVKTLKALLRPPAMLGRLGGEEFAVLLPGQDADM 252

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST----IIYRADQALYVA 247
           A   A  LR  ++   +    G  I +T S G+A   H   + +    ++  AD  LY A
Sbjct: 253 ALQTAESLRLALQALHVENDDGHPIPVTASMGLAT-LHAGDLESSGEKMLGEADAGLYKA 311

Query: 248 KKSGRNRV 255
           K+ GRN+V
Sbjct: 312 KEGGRNQV 319


>gi|330895603|gb|EGH27911.1| GGDEF domain-containing protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 551

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 89/158 (56%), Gaps = 12/158 (7%)

Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +      S  S  E  S+ F   DID+FK++ND+ GHP+GD+VI  L+
Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRREGKSLCFAMLDIDHFKRVNDSHGHPMGDRVIKSLA 438

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L        F+GR GGEEFA     +  Q A  + +D+R     ++I+  + P+ +  
Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIQSAHGVLDDIRHRF--AEIHYPAQPADLFC 496

Query: 219 TISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T SAG +A   H + +S +  +AD ALY AK +GRNRV
Sbjct: 497 TFSAGVVALGTHDDSLS-LASQADTALYCAKHAGRNRV 533


>gi|73538085|ref|YP_298452.1| GGDEF [Ralstonia eutropha JMP134]
 gi|72121422|gb|AAZ63608.1| GGDEF [Ralstonia eutropha JMP134]
          Length = 400

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 8/175 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  ++  D L+G+++  A+       +++        +++  DID FK +ND +GH  
Sbjct: 215 RRLEAIANTDGLTGVMSRKAWEDMASRALAAGARGGVPPALLIIDIDRFKGVNDTYGHAA 274

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+   +        +   +GRLGGEEFA     +   +A ++A  +R   E   + I
Sbjct: 275 GDAVLKGFASLAGAQVRSTDSLGRLGGEEFAVVLPATRVADAVVIAERIRAGAEQHAVRI 334

Query: 211 SS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
              G  +  TIS G+A     E ++ +  RAD ALY AK  GRNR+V   D ++ 
Sbjct: 335 GEHGTIVRYTISGGVACLRPGETLAQLSARADAALYRAKLEGRNRIVVHEDRQST 389


>gi|308272277|emb|CBX28883.1| hypothetical protein N47_B20290 [uncultured Desulfobacterium sp.]
          Length = 524

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 92/180 (51%), Gaps = 11/180 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           + S+ K+L  +  ++  +S  D L+GL NH  F   L         Y + LS++  D+DY
Sbjct: 328 ADSVAKKLRAANEKLKAVSIRDGLTGLYNHVYFQKQLDIELSRTIRYRKPLSLIMLDLDY 387

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND +GH  GD V+  +S   +          R GGE+F      +  +EAA+LA  
Sbjct: 388 FKVINDTYGHRTGDIVLQKISALFMNQVRISDITARYGGEKFVIILPETELKEAAVLAER 447

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNRV 255
           +R  +E + I   S  +I +TIS G+A       I   S ++  AD ALY +K +GRN++
Sbjct: 448 IRTSVEQNVIRTGS-TAIRVTISIGVATYLPSGNILSKSELLDAADSALYASKHNGRNKL 506


>gi|163789552|ref|ZP_02183990.1| GGDEF domain protein [Carnobacterium sp. AT7]
 gi|159875084|gb|EDP69150.1| GGDEF domain protein [Carnobacterium sp. AT7]
          Length = 366

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 106/204 (51%), Gaps = 13/204 (6%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSA 117
           L YIL+ ++ LV+ S     L+G ++   +++L  S   Y    + +++D L+GL N  A
Sbjct: 161 LVYILIYSIFLVLSS-----LVGILATVFIEDLLKSRSLYLNEKEHAKMDFLTGLYNMRA 215

Query: 118 FISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           F              K +++  DIDYFK IND++GH  GD ++  ++  L V       V
Sbjct: 216 FNKKWRKIEGDQTIAKTALMMVDIDYFKWINDSYGHANGDFILRQVATILKVGAHDNELV 275

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232
            R+GGEEF       S  E   +A+++R  + + +  + +G  I IT+S G+A     + 
Sbjct: 276 YRVGGEEFCLILNDLSYAEQKNIADNIRSSVADKEFLLENGTRIKITVSIGLAASDQNKD 335

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
           +  +   AD+ LY+AK  GRN+V+
Sbjct: 336 MKKLYRLADRCLYMAKNQGRNKVM 359


>gi|157147625|ref|YP_001454944.1| hypothetical protein CKO_03428 [Citrobacter koseri ATCC BAA-895]
 gi|157084830|gb|ABV14508.1| hypothetical protein CKO_03428 [Citrobacter koseri ATCC BAA-895]
          Length = 355

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 131/278 (47%), Gaps = 29/278 (10%)

Query: 11  IWLCH---EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPF--------- 58
           +W  H   + N  + S +TF++  ++   +FI ++ F  NI  F     P          
Sbjct: 81  LWAWHITLKYNAMNHSDYTFLL-IALLCVLFIGSIAFANNIIAFTFHSLPSVLACLWLNG 139

Query: 59  --YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGLLN 114
             +G+  I +  L +  I+I   +   Y   +  ++ +L      ++ LS +D L+GL N
Sbjct: 140 SEHGIRIIYLMALPMAGIAIQHVIQKRYDDFAQQLMYKLLEERETLNGLSMLDPLTGLYN 199

Query: 115 HSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
                + L +      +E+  ++  DID+FK  ND++GH +GD+ +  +S  +     + 
Sbjct: 200 RRGLQNKLNTLLALETHEEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRSR 259

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI----NISSGPSIHITISAGIA 225
             V R GGEEF      +  QEA   A  +R+ + + +I    N+S   +  +TIS GIA
Sbjct: 260 DIVTRFGGEEFMVLLTATDPQEARTTAERIRQKVYDLKIPHMFNVSVATN--VTISVGIA 317

Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
               ++ +   I +AD+ALY AK  GRN ++   ++  
Sbjct: 318 PLLGQD-MEAAIVKADKALYEAKNLGRNNILASDELRT 354


>gi|148658478|ref|YP_001278683.1| diguanylate cyclase [Roseiflexus sp. RS-1]
 gi|148570588|gb|ABQ92733.1| diguanylate cyclase with GAF sensor [Roseiflexus sp. RS-1]
          Length = 681

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 10/163 (6%)

Query: 106 IDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+G+ N   F  ++    ++       L+I+  D+D+FK +ND +GH  GD+V+  +
Sbjct: 511 IDELTGVWNRRTFFENVRREFQRSQRTLHPLAILMIDVDHFKSVNDTYGHAAGDQVLRGV 570

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +++          +GR GGEEFA A   +    A  +A  LR  +E +      G SI +
Sbjct: 571 AERCRNQLRVIDIIGRYGGEEFAVALPETDIHAAGQIAERLRIAVERAPFVTDYG-SISL 629

Query: 219 TISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFS 259
           TIS G A     + ++   +I RAD+ALY+AK+SGRN V  +S
Sbjct: 630 TISVGAAVYHPDDHVTLDAVIDRADRALYIAKRSGRNSVRVWS 672


>gi|71735129|ref|YP_272560.1| diguanylate cyclase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555682|gb|AAZ34893.1| diguanylate cyclase, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320322200|gb|EFW78296.1| diguanylate cyclase, putative [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320331851|gb|EFW87789.1| diguanylate cyclase, putative [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330872977|gb|EGH07126.1| diguanylate cyclase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 686

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIV--FFDIDYFKQINDNFGHPVGDKV 154
           Q + ID L+GL N +A+   L        +EK S++    D+D+FK+IND +GH  GDKV
Sbjct: 524 QKALIDPLTGLPNRAAWGERLEQEMSKWQHEKNSLLVCILDLDHFKRINDGYGHLAGDKV 583

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +++       +  F+ R GGEEF      +       L ++LR  +E+   +   G 
Sbjct: 584 LKIVANVFRKRLRSDDFLARFGGEEFVMLLPATPPGTGLTLLDELRAAVESCPFHFK-GE 642

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT+S G+      E   T I RADQALY AK++GRNRV
Sbjct: 643 RVTITVSIGVTAFRTAERSDTAIKRADQALYRAKENGRNRV 683


>gi|26987891|ref|NP_743316.1| diguanylate cyclase [Pseudomonas putida KT2440]
 gi|24982597|gb|AAN66780.1|AE016306_6 YaiC/YhcK/ArdA family protein [Pseudomonas putida KT2440]
          Length = 357

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 16/188 (8%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
            L LG++   +  +L     R+S LS  D L+GL NH A+         +         I
Sbjct: 159 PLALGWVCYQLAIKLGDHKRRLSALSLTDSLTGLFNHGAWKDLLQLKFQACKQQQGHAVI 218

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              DID+FK IND FGH VGD V+  LS +L          GR GG+EF      +SE +
Sbjct: 219 ALIDIDHFKTINDTFGHVVGDCVLRQLSAELRRSLREGDQAGRYGGDEFCVILPETSEAQ 278

Query: 192 AAILANDLRKII---ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247
           A      LR+ +    N Q+     P + I++S G++  +   E     + +AD+ALY+A
Sbjct: 279 ACQAMERLRERVSSYRNPQL-----PHLRISLSIGLSPFQASLESPEHWLEQADKALYIA 333

Query: 248 KKSGRNRV 255
           K +GR++V
Sbjct: 334 KHAGRDQV 341


>gi|291614011|ref|YP_003524168.1| diguanylate cyclase with GAF sensor [Sideroxydans lithotrophicus
           ES-1]
 gi|291584123|gb|ADE11781.1| diguanylate cyclase with GAF sensor [Sideroxydans lithotrophicus
           ES-1]
          Length = 379

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 93/186 (50%), Gaps = 21/186 (11%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           SI  E  +++ R+  +   D L+G+ N            + +  Y   LS +F DID FK
Sbjct: 174 SICLENSLNHERLKLVGLTDPLTGIYNRRYLETRCQEEAAHVRRYRSPLSCMFLDIDKFK 233

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND+FGH +GDK++  ++ Q+     +   + R GGEEF      +  + A  +A  +R
Sbjct: 234 RINDSFGHNIGDKILCSVTAQIKSQLRSNDVLARYGGEEFVVLLPQTGIRGACDIAERIR 293

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPIST----------IIYRADQALYVAKKS 250
           + +      I     + +TIS G+A+     P+            ++  AD+ALY+AK+S
Sbjct: 294 RTVAEQAFQIGREDELKVTISIGVAQ----APVDADGDERTVAHQLLAAADEALYLAKES 349

Query: 251 GRNRVV 256
           GRN+VV
Sbjct: 350 GRNKVV 355


>gi|307721990|ref|YP_003893130.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
 gi|306980083|gb|ADN10118.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
          Length = 559

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           ++   +  +S  D L+ L N S +       I S   Y +K  ++  DID+FK++ND +G
Sbjct: 393 VTTQELENISTHDSLTSLYNRSEYKRILEKKIKSAQRYGDKFGLIMMDIDFFKRVNDKYG 452

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD+V+   +  L        FV R GGEEF   A  +  +E   L   L+K I  + 
Sbjct: 453 HNVGDEVLKIFASILKEYVREDDFVARWGGEEFIIIANHAGNKELEKLTKKLQKEIAKT- 511

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              S  P+  +  S G+      +   +I  R D ALY+AK++GR++ +
Sbjct: 512 ---SFAPAPQLCASFGLTAYIAGDTEESIFKRVDDALYMAKQTGRDKYI 557


>gi|307131097|ref|YP_003883113.1| putative Heme-regulated two-component response regulator [Dickeya
           dadantii 3937]
 gi|306528626|gb|ADM98556.1| Putative Heme-regulated two-component response regulator [Dickeya
           dadantii 3937]
          Length = 460

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 9/160 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSI--------VFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+ LLN   FI ++      L+I           DID+FK+INDN+GH  G+  +  +
Sbjct: 301 DPLTNLLNRR-FIPTIMRREIALAISSGKPFILAMIDIDHFKKINDNYGHETGNLTLKTI 359

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           + ++     +  +V R GGEEF    + +   +AA++ + +R++I    I  ++   I +
Sbjct: 360 ATKIYESVRSSDYVFRYGGEEFMVLLVETQTSQAAMIFDSIRQLIAGLYIPATAEKGISV 419

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           TIS GIAE  +      +I +AD ALY AK +GRNR+  F
Sbjct: 420 TISVGIAEFDNHPDYQQLIKKADNALYQAKANGRNRIEIF 459


>gi|218531610|ref|YP_002422426.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           chloromethanicum CM4]
 gi|218523913|gb|ACK84498.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           chloromethanicum CM4]
          Length = 667

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 14/182 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           +E+      + +LS  D L+GL N  A  S L           +   ++  D+D+FK  N
Sbjct: 216 REVVQRGEELFRLSTTDVLTGLANRRAIDSVLQELWLANVNSGQAFGVILIDVDFFKLYN 275

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMF-VGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD  +A L + +        + +GR GGEEFAA     S ++    A ++R+ 
Sbjct: 276 DRYGHQRGDSCLAALGEAMRGAADKRRYAIGRFGGEEFAALFQADSAEQVLEFAEEVRQA 335

Query: 203 IENSQINISS--GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +E  QI  ++   P  H+T+S G    A+    +P    I  AD ALYVAK+ GRNR   
Sbjct: 336 VEALQIPHAARRDPLSHVTVSIGAAFSADVADDKP-ERAISAADDALYVAKEEGRNRARI 394

Query: 258 FS 259
           F+
Sbjct: 395 FN 396


>gi|254227901|ref|ZP_04921331.1| ggdef domain protein [Vibrio sp. Ex25]
 gi|262396112|ref|YP_003287965.1| hypothetical protein VEA_000814 [Vibrio sp. Ex25]
 gi|151939397|gb|EDN58225.1| ggdef domain protein [Vibrio sp. Ex25]
 gi|262339706|gb|ACY53500.1| hypothetical protein VEA_000814 [Vibrio sp. Ex25]
          Length = 402

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 105/196 (53%), Gaps = 18/196 (9%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSLGS 124
           +I++++ S+L   I+G +++        I+ LS +D L+GL N  A        ++    
Sbjct: 202 LIVAMSFSMLW-LINGRLIQS-------INDLSHLDALTGLHNRRAMEEIVPNLVNQAHK 253

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
             + +SI+  D+D FK IND++GH VGD V+A ++              R GG+EF    
Sbjct: 254 RKQSISIIMTDMDEFKAINDHYGHTVGDSVMATIAAIFKKHLPESACTVRFGGDEFMIVL 313

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
           L  + Q A I+A  +R  +E ++ ++ S  +  IT+S GI+E    + +  ++  AD+AL
Sbjct: 314 LEKA-QRAKIVAEQIRLAVE-TEASLQSFEN-EITMSFGISELSEGQSLHEVVAEADEAL 370

Query: 245 YVAKKSGRNRVVCFSD 260
           Y +K +GRN+V  F +
Sbjct: 371 YSSKHTGRNQVTLFGE 386


>gi|114568673|ref|YP_755353.1| response regulator receiver modulated diguanylate cyclase
           [Maricaulis maris MCS10]
 gi|114339135|gb|ABI64415.1| response regulator receiver modulated diguanylate cyclase
           [Maricaulis maris MCS10]
          Length = 324

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 82/164 (50%), Gaps = 10/164 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+G  N  AF+  L   +++       LS+V  D+D+FK +ND  GH  GD V
Sbjct: 143 RLAETDALTGAANRRAFMQYLEIQSQRATRDDIPLSVVMIDLDHFKSVNDTHGHATGDTV 202

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +      +         +GRLGGEEF     G+    A I    +R  +E   I+   G 
Sbjct: 203 LIEAVKSIQACLRDNDMLGRLGGEEFCVILPGAGLFSAGIAGERIRAAVEAMTISTDEGV 262

Query: 215 SIHITISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRNRV 255
            + +T S G+A     + IS   T++  AD ALY AK++GRN+V
Sbjct: 263 PVPVTASLGVASLTDGDLISAPDTLLQTADVALYRAKETGRNKV 306


>gi|323492067|ref|ZP_08097229.1| putative sensory box/GGDEF family protein [Vibrio brasiliensis LMG
           20546]
 gi|323313628|gb|EGA66730.1| putative sensory box/GGDEF family protein [Vibrio brasiliensis LMG
           20546]
          Length = 325

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 92/170 (54%), Gaps = 13/170 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           + +L+  D L+G+LN  AF   L         + LS +  DID+FK+IND  GH  GD+V
Sbjct: 141 LRKLADTDELTGILNRRAFTLQLEQDFNNPSGKGLSCLMIDIDHFKEINDQVGHLSGDEV 200

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           I  ++           ++GRLGGEEF      ++  +A  +A  +R+ IE++  ++    
Sbjct: 201 ITQVAHICRDTIRGSDYIGRLGGEEFGVVLTHTNAIQAYDIAERIRESIESTPCHVDE-- 258

Query: 215 SIHI---TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             HI   T+S GIAE       +  ++ +AD+A+Y +K++GRN+V  + D
Sbjct: 259 --HIILPTVSIGIAELNSQVSSVRELMVQADKAMYYSKQTGRNQVTLYYD 306


>gi|258623475|ref|ZP_05718478.1| extracellular solute-binding protein, family 3/GGDEF domain protein
           [Vibrio mimicus VM573]
 gi|258584290|gb|EEW09036.1| extracellular solute-binding protein, family 3/GGDEF domain protein
           [Vibrio mimicus VM573]
          Length = 463

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 90/163 (55%), Gaps = 6/163 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           ++++ LS+ D L+G+ N   F + L     +++ L+++ FDID FK+IND +GH  GD  
Sbjct: 298 HKLTLLSQTDSLTGIHNRHYFFNQLTKERDHSKSLTLMVFDIDDFKRINDTYGHGAGDSA 357

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           I  ++  +       M   R+GGEEFA    G + + + +LA  + + I   ++ ISS  
Sbjct: 358 ICLITACVRSALEPDMKFARIGGEEFAILVHGKTAEASQLLAELICQRIAEKELMISSNT 417

Query: 215 SIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256
            + +TIS G A   +  P  S  ++ AD  +Y AK  G+N+VV
Sbjct: 418 FVSLTISLGCA--FYPSPTESPTLHMADSLMYEAKGKGKNQVV 458


>gi|193071313|ref|ZP_03052231.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           E110019]
 gi|192955355|gb|EDV85840.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           E110019]
          Length = 558

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 545 KQAGRNR-VCASD 556


>gi|114562712|ref|YP_750225.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114334005|gb|ABI71387.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 278

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 84/162 (51%), Gaps = 13/162 (8%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N       L        SY++ LSI   DID+FK IND +GH +GD V+  ++
Sbjct: 114 DSLTGIFNRRYLDRRLKEETQRAQSYSKPLSIFLIDIDHFKNINDKYGHQIGDLVLKNIA 173

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP----- 214
             + +       V R GGEEF      +    +  LA  LR IIEN Q+ + S       
Sbjct: 174 QNIKMSLRESDIVARYGGEEFIVILPLTQVSTSYTLAERLRTIIENIQLALPSESEIDIL 233

Query: 215 SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
           SI +T+S G+A    + +    +I  AD+ALY +K++GRN+V
Sbjct: 234 SIGVTVSVGVAGMTSECKDYQCLIKNADRALYQSKQNGRNQV 275


>gi|289627986|ref|ZP_06460940.1| diguanylate cyclase, putative [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289646454|ref|ZP_06477797.1| diguanylate cyclase, putative [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330866579|gb|EGH01288.1| diguanylate cyclase [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 686

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIV--FFDIDYFKQINDNFGHPVGDKV 154
           Q + ID L+GL N +A+   L        +EK S++    D+D+FK+IND +GH  GDKV
Sbjct: 524 QKALIDPLTGLPNRAAWGERLEQEMSKWQHEKNSLLVCILDLDHFKRINDGYGHLAGDKV 583

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +++       +  F+ R GGEEF      +       L ++LR  +E+   +   G 
Sbjct: 584 LKIVANVFRKRLRSDDFLARFGGEEFVMLLPATPPGTGLTLLDELRTAVESCPFHFK-GE 642

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT+S G+      E   T I RADQALY AK++GRNRV
Sbjct: 643 RVTITVSIGVTAFRTAERSDTAIKRADQALYKAKENGRNRV 683


>gi|322420346|ref|YP_004199569.1| PAS/PAC sensor-containing diguanylate cyclase [Geobacter sp. M18]
 gi|320126733|gb|ADW14293.1| diguanylate cyclase with PAS/PAC sensor [Geobacter sp. M18]
          Length = 300

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 104/215 (48%), Gaps = 25/215 (11%)

Query: 63  YILVENLSLVIISITISLLL---GYISGSILKELFISYN-------RISQLSRIDCLSGL 112
           Y+  ++   + +S+ +S LL   G + G I  ELF           R+ +L ++  L GL
Sbjct: 88  YMHHKDGHRIPVSVRVSPLLDEKGNVLGGI--ELFTDITSMAANTLRVKELEKLALLDGL 145

Query: 113 --LNHSAFIS--------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
             L +  FI          +  YN    I+F D+D+FK++ND +GH VGD+V+ F+++  
Sbjct: 146 THLANRVFIEREIQNRFYEMRRYNVPFGILFIDVDHFKKVNDRYGHDVGDRVLKFVANAF 205

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITIS 221
           V         GR GGEEF         ++   L N LR +IE S   ++ G  I  +T+S
Sbjct: 206 VTNARPFDVYGRWGGEEFIGVMRNIDIEDLEHLGNRLRLLIEKSY--LTHGDEIVSVTVS 263

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G       +   +II RAD  LY +K  GRNR+ 
Sbjct: 264 IGATVAQPGDTTDSIIKRADLLLYQSKAGGRNRLT 298


>gi|254562531|ref|YP_003069626.1| diguanylate cyclase [Methylobacterium extorquens DM4]
 gi|254269809|emb|CAX25782.1| putative membrane protein, diguanylate cyclase (GGDEF) domain
           [Methylobacterium extorquens DM4]
          Length = 675

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 14/182 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           +E+      + +LS  D L+GL N  A  S L           +   ++  D+D+FK  N
Sbjct: 224 REVVQRGEELFRLSTTDVLTGLANRRAIDSVLQELWLANVNSGQAFGVILIDVDFFKLYN 283

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMF-VGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD  +A L + +        + +GR GGEEFAA     S ++    A ++R+ 
Sbjct: 284 DRYGHQRGDSCLAALGEAMRGAADKRRYAIGRFGGEEFAALFQADSAEQVLEFAEEVRQA 343

Query: 203 IENSQINISS--GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +E  QI  ++   P  H+T+S G    A+    +P    I  AD ALYVAK+ GRNR   
Sbjct: 344 VEALQIPHAARRDPLSHVTVSIGAAFSADVADDKP-ERAISAADDALYVAKEEGRNRARI 402

Query: 258 FS 259
           F+
Sbjct: 403 FN 404


>gi|15642222|ref|NP_231855.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|9656782|gb|AAF95368.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
          Length = 512

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 21/170 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  ++  D L+G  N   F       IS     +  LS+   D+D+FKQ+NDN+GHP 
Sbjct: 351 KRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPA 410

Query: 151 GD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GD    +V+A     +  V GT   + R GGEEF       ++QEA      +R  I   
Sbjct: 411 GDLVLQRVVALCQRHIAQV-GT---LCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMH 466

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               +S P   +T+S G+ +    E +  +  RADQA+Y AK  GRN+VV
Sbjct: 467 ----ASQP--QVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 510


>gi|254426835|ref|ZP_05040542.1| GGDEF domain protein [Alcanivorax sp. DG881]
 gi|196193004|gb|EDX87963.1| GGDEF domain protein [Alcanivorax sp. DG881]
          Length = 395

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 15/206 (7%)

Query: 69  LSLVIISITISLLLGYISGSI------LKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           LS   I+ T++  + +++G +      L+       ++  ++  D L+GL N  A     
Sbjct: 181 LSYYWIASTVAFSVPFVAGVLTLVSLLLRRWVYREAQVRAMAVQDPLTGLSNRRALFDQF 240

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                      E LS+   D+D+FKQIND  GH  GD V+  +++ L         +GR+
Sbjct: 241 AHEMARARRTGEALSVCVMDLDHFKQINDRHGHAAGDTVLVRVANLLRECLRETDRIGRI 300

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-- 233
           GGEEF      +  + A  +    R  +  + + +  G  + ++ S G+      E    
Sbjct: 301 GGEEFVLVLPDTGHEGAEKVIERCRAALVGTPVMLDVGEPLTVSASFGVVTALAGEQATE 360

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
           S ++ RAD ALY+AKK GRNRV  +S
Sbjct: 361 SQLVSRADDALYLAKKRGRNRVEFWS 386


>gi|153825311|ref|ZP_01977978.1| GGDEF family protein [Vibrio cholerae MZO-2]
 gi|149740995|gb|EDM55064.1| GGDEF family protein [Vibrio cholerae MZO-2]
          Length = 512

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 21/170 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  ++  D L+G  N   F       IS     +  LS+   D+D+FKQ+NDN+GHP 
Sbjct: 351 KRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPA 410

Query: 151 GD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GD    +V+A     +  V GT   + R GGEEF       ++QEA      +R  I   
Sbjct: 411 GDLVLQRVVALCQRHIAQV-GT---LCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMH 466

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               +S P   +T+S G+ +    E +  +  RADQA+Y AK  GRN+VV
Sbjct: 467 ----ASQP--QVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 510


>gi|126173551|ref|YP_001049700.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|125996756|gb|ABN60831.1| diguanylate cyclase [Shewanella baltica OS155]
          Length = 581

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 11/176 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           +   +  +++R+D L+G+LN  A        F+ +     +   ++ FD+D+FK+IND+F
Sbjct: 389 MQKRKFMRMARMDALTGILNRGAGQELGENLFVQATARGGD-FCVILFDLDFFKRINDSF 447

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD  +  + D L           R+GGEEFA     + E++   +A   R  IE  
Sbjct: 448 GHGTGDWALKKVVDSLKSHIRNGDVFARIGGEEFAILLPYADEEKGMEVAEQCRARIEAI 507

Query: 207 QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                SG    IT S G++     +  +  + +RAD ALY AK +GRN VV +SDI
Sbjct: 508 DTQ-HSGHKFVITASFGVSGLMADDLSLDPLFHRADMALYAAKANGRNAVVRYSDI 562


>gi|134292823|ref|YP_001116559.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
 gi|134135980|gb|ABO57094.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
          Length = 510

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 9/175 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           LK   I+ +++ +L+  D L+G+ N   F + L    ++       LS++F D+D+FK  
Sbjct: 326 LKRRQIAESKLYRLAHTDSLTGVENRGTFDTVLTKEAQRASRSGRPLSVLFVDVDHFKAF 385

Query: 143 NDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND++GH  GD V+  ++      +      V R GGEEF      +  + AA +A+ +R+
Sbjct: 386 NDHYGHLAGDDVLRRVAQTASRCLRRNSDHVARYGGEEFVVTLPDTDARGAATVADAIRR 445

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
            I    I     P  H+T+S G+A     +   +T++  AD+ALY AK  GRNRV
Sbjct: 446 SIAALDIAHERSPYGHLTVSIGVATAVGGRVSAATLLRLADEALYRAKSGGRNRV 500


>gi|94314577|ref|YP_587786.1| putative diguanylate cyclase [Cupriavidus metallidurans CH34]
 gi|93358429|gb|ABF12517.1| putative diguanylate cyclase (GGDEF domain) [Cupriavidus
           metallidurans CH34]
          Length = 395

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 84/163 (51%), Gaps = 6/163 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSAF----ISSLGSYNEKL-SIVFFDIDYFKQINDNFGHPVGD 152
            RI      D L+ L N  +F      ++   N  +  ++  D+D+FK INDN GH  GD
Sbjct: 216 ERIQHERDTDALTRLHNRRSFEEIARETISRANGGVPGLILVDLDFFKLINDNHGHASGD 275

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++   +  +  V G     GRLGGEEFA     ++ +EA  +A ++R  +E ++   + 
Sbjct: 276 AILVEFARIVRRVVGARGIAGRLGGEEFAVLLPRTTGEEAIHIAEEIRATLERARFE-TL 334

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             S  +T S G+A     E +  ++ RAD  LY AK+SGRNRV
Sbjct: 335 PDSPRVTASFGVAVWQPPESLDALMSRADGLLYTAKRSGRNRV 377


>gi|330877047|gb|EGH11196.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 308

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 8/170 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y   +Q +  D L+   N  A   SL         + + LS++  DID+FK++ND +GH 
Sbjct: 140 YRIATQTALRDPLTSTGNRIAMDQSLAREIEISSRHKQPLSLLMLDIDHFKKVNDEYGHH 199

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  L         V R GGEEF      +    A ++   LR+ + N +  
Sbjct: 200 TGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGATAAELIGERLRQAVRNLEFR 259

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               P++ +T+S G +     E   +++ RAD ALYVAK+ GRNR+   S
Sbjct: 260 -ELDPALTMTVSLGCSTLLPTETADSLLRRADNALYVAKREGRNRLAMAS 308


>gi|300702652|ref|YP_003744252.1| diguanylate cyclase [Ralstonia solanacearum CFBP2957]
 gi|299070313|emb|CBJ41605.1| putative diguanylate cyclase (GGDEF domain) [Ralstonia solanacearum
           CFBP2957]
          Length = 457

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 104/197 (52%), Gaps = 12/197 (6%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-SYNE- 127
           S++   + + LL+  ++ ++ + LF ++  + Q S  D L+G+ N S F      +++E 
Sbjct: 252 SMLAPGVLVCLLVWEVT-TLYRRLFEAHVSLQQASTHDALTGIYNRSYFNEQFPRAFDEA 310

Query: 128 -----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFA 181
                  S++  D+D+FK+ ND FGH  GD  +  ++  L  V      F+ R GGEEFA
Sbjct: 311 RRKAQPFSLLMIDVDHFKRYNDTFGHLKGDGCLVTIAAALEGVLRRHAGFIARYGGEEFA 370

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYR 239
                ++ ++A +LA   R+ + + +I   + PS ++TISAG A    +   S   +I  
Sbjct: 371 VVLPDATPRDALLLAESAREAVLHLRIEAPT-PSRYVTISAGCATAMPEASTSLEALIEA 429

Query: 240 ADQALYVAKKSGRNRVV 256
           AD  LY AK +GRN VV
Sbjct: 430 ADATLYRAKAAGRNLVV 446


>gi|294341524|emb|CAZ89941.1| conserved hypothetical protein; putative GGDEF domain and membrane
           protein [Thiomonas sp. 3As]
          Length = 412

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 91/182 (50%), Gaps = 13/182 (7%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFF 134
           L  I G +L    +   R+  L+  D L+GLLN  A    L     SY  K     ++  
Sbjct: 220 LSLIYGGMLMARLV--RRLHDLALKDPLTGLLNRRAAQQLLEREWASYRHKDLPFCVLMI 277

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+IND +GH VGD+V+  L+  L         V R+GGEEF      +    A  
Sbjct: 278 DIDHFKRINDEYGHAVGDRVLTGLATLLREGTRPTDHVARMGGEEFLVFLPQTELPSAQA 337

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253
            A  LR   +++   +     + ITIS G+A+   ++     ++ RAD+ALY AK +GRN
Sbjct: 338 AAERLR---QHTAAWVLQPEELSITISIGVAQAAAEDSAFDDLLIRADRALYAAKSAGRN 394

Query: 254 RV 255
           RV
Sbjct: 395 RV 396


>gi|157375391|ref|YP_001473991.1| sensory box protein [Shewanella sediminis HAW-EB3]
 gi|157317765|gb|ABV36863.1| sensory box/GGDEF domain protein [Shewanella sediminis HAW-EB3]
          Length = 422

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 79/156 (50%), Gaps = 7/156 (4%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N +     L S       Y  + S++  D+D+FKQIND +GH VGD+++   +
Sbjct: 265 DYLTGLRNRNYLDHKLISMSNRFKRYGFRFSLLMIDLDHFKQINDTYGHMVGDQILKCFA 324

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           D    +      + R GGEEFA    G+    A + A  L K I            I  T
Sbjct: 325 DAATALLREGDKIARFGGEEFAVILPGTELYAAKLTATRLCKHISEQAFIGPDEKVIPFT 384

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S G+ E   ++ + +I+ RAD+ALY AK  GRNR+
Sbjct: 385 VSIGVVEFEPEDDVKSIMNRADEALYKAKVGGRNRI 420


>gi|51244082|ref|YP_063966.1| hypothetical protein DP0230 [Desulfotalea psychrophila LSv54]
 gi|50875119|emb|CAG34959.1| hypothetical protein DP0230 [Desulfotalea psychrophila LSv54]
          Length = 440

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 91/177 (51%), Gaps = 12/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           E+ I  +R+   S  D L+GL N           +     Y   +S++  D+D FK +ND
Sbjct: 269 EIEIYTSRLELFSITDSLTGLYNRFRLDDVFLYEVEQAQRYKRSVSLILLDLDKFKSVND 328

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N GH VGD+VI  ++  L         VGR GGEEF      ++ + A ILA+ +R  +E
Sbjct: 329 NHGHQVGDQVIREIARILKESTRVVDTVGRWGGEEFLVICAETTLEGAGILADKIRVSVE 388

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            +   +       +T S G++     +  +++I RAD ALY AK++GRNR VCF ++
Sbjct: 389 ENDFPVVGS----VTCSFGVSSFHPGDNEASMICRADVALYFAKENGRNR-VCFEEL 440


>gi|114331433|ref|YP_747655.1| diguanylate cyclase [Nitrosomonas eutropha C91]
 gi|114308447|gb|ABI59690.1| diguanylate cyclase [Nitrosomonas eutropha C91]
          Length = 551

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 9/164 (5%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +LS  D L+GL N +         ++    ++    ++  DIDYFK IND  GH VGD++
Sbjct: 386 KLSITDGLTGLYNRTKLDTILSEQLARFKRHDRPFCLLMIDIDYFKTINDKLGHIVGDRI 445

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  L+    T  +  R GG+EF      ++   A   A  +R  + ++ +     P
Sbjct: 446 LVTVASVLLKSIRTIDYAARYGGDEFVVILTETNSSAAIKTAERIRAEVNSACLAFKEHP 505

Query: 215 SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           + HIT+S GI +  + +   + +I RAD ALY AK+SGR+RV C
Sbjct: 506 A-HITLSIGITQSYYDDITPNDLIARADAALYEAKESGRDRVHC 548


>gi|270158318|ref|ZP_06186975.1| PAS/GGDEF domain-containing protein [Legionella longbeachae D-4968]
 gi|289163435|ref|YP_003453573.1| regulatory protein (GGDEF, PAS, PAC domains) [Legionella
           longbeachae NSW150]
 gi|269990343|gb|EEZ96597.1| PAS/GGDEF domain-containing protein [Legionella longbeachae D-4968]
 gi|288856608|emb|CBJ10415.1| putative regulatory protein (GGDEF, PAS, PAC domains) [Legionella
           longbeachae NSW150]
          Length = 680

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 81/169 (47%), Gaps = 8/169 (4%)

Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S+LS  D L+ L N        S  +  +   N  L +   DID FK  ND + H  GD
Sbjct: 510 LSELSLHDPLTNLYNRRYLNEILSRELILIARENRTLCVAMLDIDNFKHFNDTYSHLAGD 569

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +++  +   L   F    F  R GGEEF    L ++   A     +LR+ I+N  +    
Sbjct: 570 ELLKAIGKLLKNSFRESDFCVRFGGEEFVVVLLNTTLNNALTKMEELREKIKNITLYFKG 629

Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
               H+TIS G+AE       I  II  AD ALY AK++G++RV+ F+ 
Sbjct: 630 NRLSHVTISIGVAEALKDGASIEEIIKAADHALYAAKQAGKDRVIAFTQ 678


>gi|229020638|ref|ZP_04177372.1| GGDEF domain protein [Bacillus cereus AH1273]
 gi|229026851|ref|ZP_04183178.1| GGDEF domain protein [Bacillus cereus AH1272]
 gi|228734448|gb|EEL85115.1| GGDEF domain protein [Bacillus cereus AH1272]
 gi|228740662|gb|EEL90926.1| GGDEF domain protein [Bacillus cereus AH1273]
          Length = 343

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 110/230 (47%), Gaps = 18/230 (7%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENL---SLVIISITISLLLGYISGSILKE 92
           SIF   + F  N++   I + P Y    IL +++   SL ++   ++    ++S S + +
Sbjct: 118 SIFAKWIWF--NVYSLSILILPLY----ILFKDMYVVSLYLVCCIVAAYFTFVSASYVLQ 171

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
               +  +   + ID L+ L N   F   +  +       N+ L ++  DID+FK +ND 
Sbjct: 172 SNELFQTMKHYATIDALTNLGNVRQFDLEMNRHIDNKYMKNDSLCLLLIDIDHFKYVNDT 231

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GHP GD+V+  +   L+        V R GGEEFA             +   +R  +E 
Sbjct: 232 YGHPAGDEVLKQVGRILLENGPFSNLVFRKGGEEFALLIPKKGLAFGTRIGEQIRLAVEK 291

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               + +G  I IT+S GI+E  +K+     I  AD ALY +K++GRN+V
Sbjct: 292 HSFQLKNGTKIKITVSVGISE--YKKSPEQFIQAADDALYYSKRNGRNQV 339


>gi|254457773|ref|ZP_05071201.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207086565|gb|EDZ63849.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 486

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 101/192 (52%), Gaps = 11/192 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSY 125
           +IIS+  +LL   I   +L+     + ++  L+  D L+ + N   F +      SL   
Sbjct: 288 LIISLIFTLLFAIIIMFVLRNY---HRKLEILADFDSLTEIPNRRNFNTKFEQFLSLHKR 344

Query: 126 NEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           +E+ + +VF DID FK IND  GH +GD+V+  ++  L         + R GGEEF  A 
Sbjct: 345 DERPICLVFMDIDDFKSINDELGHNIGDEVLIQVAKILKNRVRKTDLLSRWGGEEFTIAF 404

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
           + ++  +A  +   +R+ IE ++  +      ++T S G+      + I T+I RAD+A+
Sbjct: 405 IDTNINDAHTITQKIREAIEKNET-LKKTVGYNLTASFGLTACNEYDTIDTVISRADKAM 463

Query: 245 YVAKKSGRNRVV 256
           Y AK+ G+NRVV
Sbjct: 464 YEAKQHGKNRVV 475


>gi|172064518|ref|YP_001812169.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           MC40-6]
 gi|171997035|gb|ACB67953.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           MC40-6]
          Length = 326

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 13/181 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           + +E   +  ++ + +  D L+G+ N   F + LG        Y   LS++ FD+D+FK 
Sbjct: 149 MQREREEAVAKLREHANRDGLTGIANRRFFEARLGDEFARWQRYGGDLSMLLFDLDHFKT 208

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH  GD V+   + ++  +  +    GR GGEEFA     ++  EA  +A+ +R 
Sbjct: 209 INDRFGHAAGDAVLRETARRVASIVRSQDTFGRFGGEEFALLLPCTNLDEAMRVADKVRD 268

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCF 258
            I ++ ++ + G S+ +T S G A  C    ++    ++  AD ALY AK+ GR+R + +
Sbjct: 269 AIGSTPVD-AEGVSVPVTASVGGA--CATPGVAAPDVLVNEADTALYRAKRLGRDRSIAY 325

Query: 259 S 259
           +
Sbjct: 326 A 326


>gi|311696761|gb|ADP99634.1| diguanylate cyclase [marine bacterium HP15]
          Length = 366

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 9/167 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG---SYNEK----LSIVFFDIDYFKQINDNFGHPV 150
            R+  +++ D L+GL N S F  +L    +  E+     ++V  DID+FK +ND  GH  
Sbjct: 184 QRLVDMAQTDALTGLANRSNFQGTLNRTIAEGERSGIGFALVVMDIDHFKVVNDTLGHEA 243

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  +S  L     +  FVGRLGGEEF          +A +L ++LR+ I + ++  
Sbjct: 244 GDFVLKNISRCLTERLRSTDFVGRLGGEEFGLILRDVKPADAFVLMDELRQRISDRELPY 303

Query: 211 SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
                I +T S GIA    H     ++   AD+ LY  K++GRN VV
Sbjct: 304 GDA-RIRVTASFGIAHWPDHGREAESLFRVADRWLYSGKRAGRNCVV 349


>gi|254796867|ref|YP_003081704.1| Response regulator/GGDEF domain protein PleD [Neorickettsia
           risticii str. Illinois]
 gi|254590103|gb|ACT69465.1| Response regulator/GGDEF domain protein PleD [Neorickettsia
           risticii str. Illinois]
          Length = 457

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 9/164 (5%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSL-GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +++ ID L+ L N   F       +++L  S N+  S++  DIDYFK+IND  GH  GD 
Sbjct: 287 KMAVIDPLTSLYNRYYFEKYMDELLATLTKSQNKTFSLMMIDIDYFKKINDACGHLSGDL 346

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISS 212
           V+  L+  L         V + GGEE     +    ++A   A  +RK +E ++ + I+ 
Sbjct: 347 VLKQLATCLKGCLRLNDLVAKFGGEEIVVVLVDIGLEDAFATAERIRKTVEKTEFSTIND 406

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              + +T+S G++E   ++   T+I RAD  LY+AK+ GRNRVV
Sbjct: 407 EVKVPLTVSIGVSEYQPQDTTKTLIGRADANLYIAKEKGRNRVV 450


>gi|317493746|ref|ZP_07952163.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918073|gb|EFV39415.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 354

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 123/257 (47%), Gaps = 29/257 (11%)

Query: 23  SPHTFMI--YFSIFFSIFIATVIFIANIFLFYIGLTP----------FYGLEYILVENLS 70
           S H F++   FS+FF   IA V    N+  F +   P          F+ +  IL   L+
Sbjct: 97  SGHEFLLINLFSVFF---IAAVTLSDNLLAFCLNAIPVAITVIILEDFHNMTRILFV-LA 152

Query: 71  LVIISITISLLLGY----ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------IS 120
           L II++++  ++       +  ++ +L     R S LS ID L+ LLN          +S
Sbjct: 153 LPIIALSLHRVITRRREAFTRQLVNQLERDKARFSDLSMIDPLTTLLNRRGLEFQFHHMS 212

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           +  +   K  +V  DID+FK  ND++GH  GD  +  ++  +     +     R GGEEF
Sbjct: 213 NDCATEHKDFVVMIDIDFFKLYNDHYGHQYGDTALTAIAQIIKEAVRSRDLAVRYGGEEF 272

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH--ITISAGIAERCHKEPISTIIY 238
                 +SE  A  +   +R  +E   +     P+ +  +TISAG++E  +   +   I 
Sbjct: 273 LLILRDASETLAIQICEHIRSHVEQLALINEYQPNGYSVVTISAGLSE-MYNNNLENAIA 331

Query: 239 RADQALYVAKKSGRNRV 255
           RADQALY++K+ GRNRV
Sbjct: 332 RADQALYLSKQKGRNRV 348


>gi|300951001|ref|ZP_07164875.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1]
 gi|300959010|ref|ZP_07171108.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1]
 gi|301644676|ref|ZP_07244658.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|300314377|gb|EFJ64161.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1]
 gi|300449712|gb|EFK13332.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1]
 gi|301076990|gb|EFK91796.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|315619533|gb|EFV00060.1| uncharacterized protein yneF [Escherichia coli 3431]
          Length = 296

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 132 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 189

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 190 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSI 248

Query: 223 GIAE-RCH----KEPISTIIYRADQALYVAKKSGRNR 254
           G+   R       +  + ++  AD  LY +KK GRNR
Sbjct: 249 GVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 285


>gi|262173479|ref|ZP_06041156.1| GGDEF family protein [Vibrio mimicus MB-451]
 gi|261890837|gb|EEY36824.1| GGDEF family protein [Vibrio mimicus MB-451]
          Length = 326

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 15/180 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQI 142
           +++ +Y  I   S  D L+GLLN             I+     N +L I   D+D+FK I
Sbjct: 132 KIYRNYTVILHESERDKLTGLLNRRTLEDRLRNTFAINPSAEENHRLWIAMLDLDHFKAI 191

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+FGH +GD+ +   + Q+   FG    + R GGEEF        EQ      +  R+ 
Sbjct: 192 NDHFGHMIGDETLLMFAQQMQHYFGPSSQLFRFGGEEFVIVFSSGDEQAINRTLDGFRRH 251

Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           I          P I  ++ SAG       + + TI+  AD+ALY AK+ GRN+V C+ ++
Sbjct: 252 IRQHTF-----PRIGELSFSAGFCSLRPGDYLPTILDHADKALYYAKEHGRNQVHCYENL 306


>gi|91794309|ref|YP_563960.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91716311|gb|ABE56237.1| GGDEF domain [Shewanella denitrificans OS217]
          Length = 292

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/181 (35%), Positives = 89/181 (49%), Gaps = 14/181 (7%)

Query: 85  ISGSILKELFISYNRISQ----LSRIDCLSGLLN----HSAFISSLGSYN--EKLSIVFF 134
           +    L+EL  +  R +Q    LS  D L+ L N    +S +I      N  E + ++  
Sbjct: 107 VKNKQLEELRGNLERKNQQLDFLSAHDPLTKLYNRHYFNSQYIDKKQDENNVEPMCLIIM 166

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+DYFK INDNFGH  GD V+A L++ L+        V R GGEEF       + Q A  
Sbjct: 167 DVDYFKLINDNFGHNTGDIVLAKLAELLINTVRGSDVVTRWGGEEFIILCPKLALQSACE 226

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           L   L   I+ +Q        + IT S G+A+R   E I   + RAD+ALY AK  GRN+
Sbjct: 227 LCQRLAIQIQQTQFT----DGVKITCSFGVAQREANESILMCLDRADKALYRAKDGGRNQ 282

Query: 255 V 255
            
Sbjct: 283 T 283


>gi|154248337|ref|YP_001419295.1| diguanylate cyclase [Xanthobacter autotrophicus Py2]
 gi|154162422|gb|ABS69638.1| diguanylate cyclase [Xanthobacter autotrophicus Py2]
          Length = 401

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 19/205 (9%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS-RIDCLSGLLNHSAFISS 121
           Y LV  +S  I+ +   L+L      +LK +  +  R SQ++   D LSGLLN   F S 
Sbjct: 192 YALVSQVSSGILFLATGLIL------LLKSV-QAVVRESQIAAETDVLSGLLNRRGFDSR 244

Query: 122 L-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                  +    ++++  D+D+FK +ND FGH  GD  I   +  L         + RLG
Sbjct: 245 AERLIAQAKGRPVALLILDLDHFKSVNDRFGHSTGDAAIRAFAVLLSRTVPPSALIARLG 304

Query: 177 GEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           GEEFA     +  + A + A  +R     + ++ +       +T+S G+A       +  
Sbjct: 305 GEEFAVLLDRTGLEAARLQAEAIRLATFHHQEVGLPK-----LTVSIGVAAPASSHLLPE 359

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
            + RAD ALY AK++GRNRV C ++
Sbjct: 360 AMERADAALYEAKRAGRNRVCCAAE 384


>gi|320109343|ref|YP_004184933.1| diguanylate cyclase [Terriglobus saanensis SP1PR4]
 gi|319927864|gb|ADV84939.1| diguanylate cyclase [Terriglobus saanensis SP1PR4]
          Length = 389

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 89/175 (50%), Gaps = 16/175 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           N++  L+  D L+ + N  AF+                 S++  D+D+FK+IND FGH  
Sbjct: 214 NKLEYLASTDPLTRIYNRRAFLEWCDREVIKSQRTETPFSLLILDLDHFKRINDLFGHHS 273

Query: 151 GD-KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN---- 205
           GD  +IA +      V G  + +GR GGEEF     G+S + A I+AN +   ++     
Sbjct: 274 GDAALIAVVETMQNAVRGIDI-LGRWGGEEFVILLPGASAEAAMIVANRVCNAVKAMRLP 332

Query: 206 --SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              Q   S  P  H+T+S G++  R  ++ I  I  RAD ALY AK +GRNRV+ 
Sbjct: 333 AFEQKEPSKDPEQHLTVSLGLSTWRGPEDTIKDIARRADSALYQAKAAGRNRVLV 387


>gi|134283795|ref|ZP_01770492.1| diguanylate cyclase [Burkholderia pseudomallei 305]
 gi|134244783|gb|EBA44880.1| diguanylate cyclase [Burkholderia pseudomallei 305]
          Length = 454

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 9/177 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           +L+EL  +  ++  L+  D L+G  N   FI  + S            S++  D+D FK 
Sbjct: 278 VLQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFKT 337

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           INDN+GH VGD V+     Q +V       + R+GGEEF           A+ +A  +R 
Sbjct: 338 INDNYGHQVGDVVLRNFVRQCLVAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRT 397

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
            I N+   I  G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV 
Sbjct: 398 TIANASFGI-DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 453


>gi|78776844|ref|YP_393159.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78497384|gb|ABB43924.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Sulfurimonas denitrificans DSM 1251]
          Length = 659

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 84/167 (50%), Gaps = 13/167 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +++  D L+G+ N   F       +     YN  LS++  DID+FK+IND +GH  GD
Sbjct: 498 LEKMANTDNLTGIYNRRKFEEIIKIEMERSARYNSNLSLIMIDIDHFKRINDTYGHDEGD 557

Query: 153 KVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            VI    + +   +    +FV R GGEEF      +  + A+ILA  LR  IE+  +N  
Sbjct: 558 NVIRKTVEIVSKNIRHLDVFV-RWGGEEFIVLCPQTESKNASILAEKLRVAIES--VNYE 614

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +     IT S G+      E  S+ I R D ALY AK  GRNRVV  
Sbjct: 615 TLGK--ITCSFGVTSYIKDEDKSSFIKRLDTALYSAKDEGRNRVVAL 659


>gi|313499507|gb|ADR60873.1| Diguanylate cyclase [Pseudomonas putida BIRD-1]
          Length = 544

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 14/175 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIND 144
           ++L+E     NR +Q    D L+GL N  +    +S L + N + + +  DID+FK+IND
Sbjct: 376 NLLQERIGRLNRDAQ---TDPLTGLGNRRSLEISLSLLEAENREFAAIALDIDHFKRIND 432

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH VGD+V+  L++ +         + R GGEEF     G++   AA +A  LR  ++
Sbjct: 433 SHGHEVGDQVLRQLAELMRRCCREGDLLCRTGGEEFLILLPGATLNVAAAVAERLRVTVQ 492

Query: 205 NSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              +  S G    +TIS G+     + H EP++  +  AD+ALY AK+ GRNRV 
Sbjct: 493 EMPVE-SVGA---VTISLGVTHWDGKTHGEPMNA-LGEADRALYRAKQEGRNRVA 542


>gi|331668646|ref|ZP_08369494.1| cellulose synthesis regulatory protein [Escherichia coli TA271]
 gi|331063840|gb|EGI35751.1| cellulose synthesis regulatory protein [Escherichia coli TA271]
          Length = 558

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLYQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 545 KQAGRNR-VCASD 556


>gi|237653253|ref|YP_002889567.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
 gi|237624500|gb|ACR01190.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
          Length = 710

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 86/174 (49%), Gaps = 11/174 (6%)

Query: 102 QLSRIDCLSGLLNHSAFI----SSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           QL+  D L+GL N   F+      LG         +++  D+D+FK+IND  GH  GD+V
Sbjct: 523 QLATSDPLTGLWNRRHFVEVVRGELGRVRRNQAPAALLLMDLDFFKRINDTHGHAAGDEV 582

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQINISSG 213
           +   +  +           RLGGEEF A  L S +   A+ A D LR+++ +S  ++ SG
Sbjct: 583 LRHFTATVSAQLREADVFARLGGEEF-AVLLPSIDALGAVRAADRLRRVVADSPASVDSG 641

Query: 214 PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            ++H ++S G        E       RAD+ALY AK +GRNRVV         C
Sbjct: 642 -ALHYSVSIGATMLDAADEGYEAAYARADEALYAAKHAGRNRVVLAPASAGAPC 694


>gi|268680440|ref|YP_003304871.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618471|gb|ACZ12836.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 821

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 8/172 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL +   ++  L+ ID L+ + N   F      Y       N  L I+  DID+ K++ND
Sbjct: 647 ELSLLNAKLKDLANIDELTKIANRRYFFLLATQYFHAAKRNNTPLHILSIDIDWLKKVND 706

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH +GD+V+      +          GR+GGEEF      +  Q A ILA  +R  +E
Sbjct: 707 TYGHAMGDEVLKAFCKHVQSSLRQSDLFGRIGGEEFCVCIQNTPLQGAKILAEKIRHKVE 766

Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S+ +I++     IT+S G++      E I   + R+D+ALY AK  GRN+V
Sbjct: 767 ASRESINNQALPAITVSIGLSSLHPEDEEIFDTLKRSDEALYKAKHHGRNQV 818


>gi|222085608|ref|YP_002544138.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221723056|gb|ACM26212.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 458

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 86/167 (51%), Gaps = 9/167 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL N     + L        +    LSI+  DID FK +ND +GH  GD+V
Sbjct: 291 ELAVTDALTGLNNRRYLDNHLKILFNRSLARGRPLSILITDIDRFKLVNDTYGHDAGDEV 350

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSG 213
           +   + ++           R GGEEF      +  + AA +A  LR  +E + + +  +G
Sbjct: 351 LKEFAARIRSTVRGADLACRYGGEEFVVVMPDTPPEVAAAVAERLRAAVETAPVTLREAG 410

Query: 214 PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +++IT S GI+ R    E    ++ +AD ALY AKK+GRNRVV  +
Sbjct: 411 AALNITASFGISSRLESIETPEQLMKQADLALYEAKKAGRNRVVAAA 457


>gi|153213789|ref|ZP_01948997.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|124115713|gb|EAY34533.1| GGDEF family protein [Vibrio cholerae 1587]
          Length = 512

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 21/170 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  ++  D L+G  N   F       IS     +  LS+   D+D+FKQ+NDN+GHP 
Sbjct: 351 KRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPA 410

Query: 151 GD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GD    +V+A     +  V GT   + R GGEEF       ++QEA      +R  I   
Sbjct: 411 GDLVLQRVVALCQRHIAQV-GT---LCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMH 466

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               +S P   +T+S G+ +    E +  +  RADQA+Y AK  GRN+VV
Sbjct: 467 ----ASQP--QVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 510


>gi|121586234|ref|ZP_01676024.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121726575|ref|ZP_01679824.1| GGDEF family protein [Vibrio cholerae V52]
 gi|147673860|ref|YP_001217741.1| GGDEF family protein [Vibrio cholerae O395]
 gi|153817082|ref|ZP_01969749.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|153820810|ref|ZP_01973477.1| GGDEF family protein [Vibrio cholerae B33]
 gi|227082348|ref|YP_002810899.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|254849354|ref|ZP_05238704.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|297580867|ref|ZP_06942792.1| GGDEF family protein [Vibrio cholerae RC385]
 gi|298500400|ref|ZP_07010205.1| GGDEF family protein [Vibrio cholerae MAK 757]
 gi|121549500|gb|EAX59526.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121631028|gb|EAX63407.1| GGDEF family protein [Vibrio cholerae V52]
 gi|126512350|gb|EAZ74944.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|126521602|gb|EAZ78825.1| GGDEF family protein [Vibrio cholerae B33]
 gi|146315743|gb|ABQ20282.1| GGDEF family protein [Vibrio cholerae O395]
 gi|227010236|gb|ACP06448.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|227014120|gb|ACP10330.1| GGDEF family protein [Vibrio cholerae O395]
 gi|254845059|gb|EET23473.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|297534693|gb|EFH73529.1| GGDEF family protein [Vibrio cholerae RC385]
 gi|297541093|gb|EFH77147.1| GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 512

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 21/170 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  ++  D L+G  N   F       IS     +  LS+   D+D+FKQ+NDN+GHP 
Sbjct: 351 KRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPA 410

Query: 151 GD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GD    +V+A     +  V GT   + R GGEEF       ++QEA      +R  I   
Sbjct: 411 GDLVLQRVVALCQRHIAQV-GT---LCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMH 466

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               +S P   +T+S G+ +    E +  +  RADQA+Y AK  GRN+VV
Sbjct: 467 ----ASQP--QVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 510


>gi|89098311|ref|ZP_01171195.1| GGDEF [Bacillus sp. NRRL B-14911]
 gi|89086860|gb|EAR65977.1| GGDEF [Bacillus sp. NRRL B-14911]
          Length = 454

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 91/173 (52%), Gaps = 13/173 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPV 150
            ++ +L+ ID L+ + N + F    + SLG  +     +S++ FDID+FK+IND +GH  
Sbjct: 274 EQLKELASIDGLTQVYNRTYFMKQSLESLGGISPNGGDVSLIMFDIDHFKKINDEYGHET 333

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V++ ++            +GR GGEEF      +S  EA  LA  +R  +      +
Sbjct: 334 GDLVLSHVARVAKESIRAADVIGRYGGEEFIILLPDTSFDEAYDLAEAIRLNVSEQYTKL 393

Query: 211 SSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
               ++H T+S G++      +   +PI  ++  ADQALY AK++GRN V  F
Sbjct: 394 GQ-VNVHATLSLGVSHMFLFPQVLDDPIQFLMREADQALYAAKRNGRNNVQRF 445


>gi|117920670|ref|YP_869862.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117613002|gb|ABK48456.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 342

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 97/200 (48%), Gaps = 11/200 (5%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----- 118
           ++ E  SL++ + T+   L  + G  ++ L      +S  +  D L+ L N  A+     
Sbjct: 140 VIDEMQSLLVNNQTMEQSLSAM-GQEVQNLKTEMENLSLAAMTDQLTSLHNRRAYEIAIQ 198

Query: 119 --ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
             I      + + S++  DID FK  NDN+GH VGDKV+A+++  L        FV R G
Sbjct: 199 DHIHRAEQQHTRCSLLLIDIDRFKVFNDNYGHQVGDKVLAYVALALKQCVRGDDFVARYG 258

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH---ITISAGIAERCHKEPI 233
           GEEF      +   +A  +A  LR+ I   ++ I     +    IT+S G+A     +  
Sbjct: 259 GEEFVVLLPNTHFHDALQVAETLRERISERRLAIGKDKKLSLGAITVSIGLASLQEGDDA 318

Query: 234 STIIYRADQALYVAKKSGRN 253
            T+  RAD+ALY AK  GRN
Sbjct: 319 DTLFSRADKALYEAKSDGRN 338


>gi|288940332|ref|YP_003442572.1| response regulator receiver modulated diguanylate cyclase
           [Allochromatium vinosum DSM 180]
 gi|288895704|gb|ADC61540.1| response regulator receiver modulated diguanylate cyclase
           [Allochromatium vinosum DSM 180]
          Length = 559

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 11/178 (6%)

Query: 89  ILKELFISYNRISQLSRI---DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDY 138
           ++ E+ +   R+  L  +   D L+GL NH+  +       +S       L +   D+D+
Sbjct: 375 LVTEVHLRAERMRTLRSLMIRDSLTGLFNHNTILQLLKVAMASCQRSGRLLCLAMIDVDH 434

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND  GHP GD+V+  L   L +       VGR GGEEFA    G    +A  + + 
Sbjct: 435 FKAVNDTHGHPTGDQVLMALGRTLRLRLRESDIVGRYGGEEFAVIMTGLDADQAKTIMDS 494

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           LR+        I+ G   H T S G+A        S +I  AD ALY AK++GRNR++
Sbjct: 495 LRESFAAVTF-IADGTEFHCTFSGGLAAFPEYSDPSALIEAADAALYRAKRAGRNRIL 551


>gi|188493935|ref|ZP_03001205.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 53638]
 gi|188489134|gb|EDU64237.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 53638]
          Length = 558

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 545 KQAGRNR-VCASD 556


>gi|330446066|ref|ZP_08309718.1| diguanylate cyclase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490257|dbj|GAA04215.1| diguanylate cyclase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 339

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 89/174 (51%), Gaps = 11/174 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++ LS  D L+ L N   + + L          ++ +++V FDID+FK++ND +GH  G
Sbjct: 149 QLTHLSITDRLTQLYNRGHWENCLSDEFDRYQQLHQPMTLVMFDIDHFKKVNDTYGHVAG 208

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D VI  ++  +          GR GGEEF     G++    +     LRK +E S I + 
Sbjct: 209 DAVIKNIASIVRSAKRQSDIAGRYGGEEFGVILPGTTADMTSYFTERLRKKVEKSSIEV- 267

Query: 212 SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            G +I++TIS GI E  H       + + + D ALY +KK+GRN+    ++  N
Sbjct: 268 DGTAINVTISLGICE-LHSGITNYESWLEQTDSALYESKKNGRNQTTVITEEGN 320


>gi|323493876|ref|ZP_08098993.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
 gi|323311817|gb|EGA64964.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
          Length = 411

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 84/174 (48%), Gaps = 21/174 (12%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +L+  D L+ +    A  S L     + +I   DID+FK  ND +GH  GD V+  ++ +
Sbjct: 236 ELAFKDTLTDIPGRLALESDLRHLGRRYTIAMLDIDHFKSFNDTYGHDTGDDVLKLVASR 295

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP---- 214
           L +V G    V R GGEEF     G    EA      LR  IE+ Q+   N  + P    
Sbjct: 296 LQLVGGRAK-VYRYGGEEFTVLFKGKLADEAQDHLELLRSSIESYQMTLRNQDARPKDDK 354

Query: 215 -------------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                        S+++TIS G+A+      + T++  AD ALY AK+SGRN+V
Sbjct: 355 VGSKKRGGKKNQDSVNVTISIGVADSSESNDVYTVMKSADSALYKAKQSGRNKV 408


>gi|307312459|ref|ZP_07592093.1| diguanylate cyclase [Escherichia coli W]
 gi|306907630|gb|EFN38133.1| diguanylate cyclase [Escherichia coli W]
 gi|315061255|gb|ADT75582.1| predicted diguanylate cyclase [Escherichia coli W]
 gi|323378168|gb|ADX50436.1| diguanylate cyclase [Escherichia coli KO11]
          Length = 564

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 551 KQAGRNR-VCASD 562


>gi|298249633|ref|ZP_06973437.1| diguanylate cyclase [Ktedonobacter racemifer DSM 44963]
 gi|297547637|gb|EFH81504.1| diguanylate cyclase [Ktedonobacter racemifer DSM 44963]
          Length = 697

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 90/180 (50%), Gaps = 10/180 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQIN 143
           +L E+   Y   ++ +  D ++ L NH A +S+L            +I+F D+D FK+IN
Sbjct: 517 LLMEVDRLYREQARAATTDPVTELPNHRAIMSTLNVVFTECRQRTCAILFVDVDRFKRIN 576

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGD ++  +  +L         VGR GGEEFA     ++   A  +A  LR+ +
Sbjct: 577 DRWGHQVGDCILHEVGQRLRASLRADDTVGRYGGEEFAVILRDTNLDLAMSVAERLRRAL 636

Query: 204 ENSQINISS---GPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           E       +       H+TIS GIA    H      ++ RAD A+Y AK++GRN  VC +
Sbjct: 637 EERPCCWQTEGERHETHVTISVGIALYPDHASTPDQLMKRADLAMYRAKQAGRN-CVCIA 695


>gi|229522172|ref|ZP_04411589.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
 gi|229341097|gb|EEO06102.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
          Length = 495

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 21/170 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  ++  D L+G  N   F       IS     +  LS+   D+D+FKQ+NDN+GHP 
Sbjct: 334 KRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPA 393

Query: 151 GD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GD    +V+A     +  V GT   + R GGEEF       ++QEA      +R  I   
Sbjct: 394 GDLVLQRVVALCQRHIAQV-GT---LCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMH 449

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               +S P   +T+S G+ +    E +  +  RADQA+Y AK  GRN+VV
Sbjct: 450 ----ASQP--QVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 493


>gi|206564673|ref|YP_002235436.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
 gi|198040713|emb|CAR56699.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
          Length = 312

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 97/182 (53%), Gaps = 15/182 (8%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           + +E   +  ++ + +  D L+G+ N   F + LG        Y   LS++ FD+D+FK 
Sbjct: 135 MQREREEAVAKLREHANRDGLTGIANRRFFEARLGDEFARWQRYGGDLSVLLFDLDHFKT 194

Query: 142 INDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           IND FGH  GD V+   + ++  +V G   F GR GGEEFA     ++  EA  +A+ +R
Sbjct: 195 INDRFGHAAGDAVLRETARRVASIVRGQDTF-GRFGGEEFALLLPCTNLDEAMRVADKVR 253

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVC 257
             I +  ++ + G S+ +T S G A  C K    T   ++  AD ALY AK+ GR+R V 
Sbjct: 254 DAIGSLPVD-AEGVSVPVTASVGGA--CAKAGALTCDVLVNEADAALYRAKRLGRDRSVA 310

Query: 258 FS 259
           ++
Sbjct: 311 YA 312


>gi|170680876|ref|YP_001743290.1| diguanylate cyclase [Escherichia coli SMS-3-5]
 gi|170518594|gb|ACB16772.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           SMS-3-5]
          Length = 558

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 545 KQAGRNR-VCASD 556


>gi|195952594|ref|YP_002120884.1| diguanylate cyclase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932206|gb|ACG56906.1| diguanylate cyclase [Hydrogenobaculum sp. Y04AAS1]
          Length = 362

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 82/165 (49%), Gaps = 11/165 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + + S  D LS L N + F        +    Y   LS+  FDID FK+IND +GHP+GD
Sbjct: 196 VYEKSTKDQLSNLYNRAKFNDIKNYEFARSRRYKIPLSLCMFDIDDFKKINDTYGHPIGD 255

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KVI  L   ++          R GGEEF      +   EA +    L   I N  I I  
Sbjct: 256 KVIKELGKVVLDNVRKSDIPFRWGGEEFLILFTHTHLNEAKLACEKLLNKIRN--IEIKE 313

Query: 213 GPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G +I   T+S G+ E +   + +   I RAD+ALY AK+SG+NR+
Sbjct: 314 GDNIVKFTVSMGLTELKEEDDSLEKAIERADKALYYAKRSGKNRI 358


>gi|152997497|ref|YP_001342332.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150838421|gb|ABR72397.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 384

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 18/254 (7%)

Query: 16  EKNLESFS--PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI----LVENL 69
           E+N  SF+   H F+     + ++ +  V+FI+ +    IGL  +   +      L+  +
Sbjct: 126 ERNWVSFAFLDHAFLATDVSWSTVLLWCVLFISAL---AIGLAWWLSGDTFRASGLISIV 182

Query: 70  SLVIISITISLLLGY---ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN 126
           SL+I S  +S  + +   +S   L  ++       +++ +D ++ L    A    L   +
Sbjct: 183 SLLIASHFVSSDIQFDALLSAQFLLWIWFLLMESHRMAYLDDMTKLPGRRALNEQLVGLS 242

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           +  +I   D+D+FK+ ND FGH +GDKV+  ++ QL   F +P    R GGEEF     G
Sbjct: 243 KYYAIAMVDVDHFKKFNDTFGHDMGDKVLKSVAAQL-KQFSSPGRAFRFGGEEFTIVFRG 301

Query: 187 SSEQEAAILANDLRKIIENSQINI-----SSGPSIHITISAGIAERCHKEPISTIIYRAD 241
               E   +   +R+ IE++ + +          +++T S G+A     E   +++ RAD
Sbjct: 302 KRLSEVDGILELIRENIESALVEVFDPKKKQETEVNVTASIGVAFAVVGESSDSVLKRAD 361

Query: 242 QALYVAKKSGRNRV 255
           +ALY +KK GRNRV
Sbjct: 362 EALYQSKKKGRNRV 375


>gi|88797380|ref|ZP_01112970.1| diguanylate cyclase (GGDEF domain) [Reinekea sp. MED297]
 gi|88780249|gb|EAR11434.1| diguanylate cyclase (GGDEF domain) [Reinekea sp. MED297]
          Length = 300

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 79/162 (48%), Gaps = 4/162 (2%)

Query: 98  NRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           N+  QLS  D L+GL+N +A+   I    S  +   ++  D+D+FKQIND +GH  GD  
Sbjct: 137 NQYKQLSITDALTGLMNRTAYNQRIEQFVSDQQPYLLMLIDLDHFKQINDRYGHDAGDAA 196

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +   L           R+GGEEFA      S  +A  +A  LR  IE   I      
Sbjct: 197 LKQVGALLGSNSRNQEDCFRVGGEEFAIVLTQCSLSQAESIAERLRTAIETHAIRWQDAE 256

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  T+S G+      E   T    AD ALY AK++GRNRVV
Sbjct: 257 -LSCTVSIGLCLSQTGESPQTTYRHADAALYEAKQNGRNRVV 297


>gi|194430437|ref|ZP_03062920.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B171]
 gi|194411516|gb|EDX27855.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B171]
 gi|323158566|gb|EFZ44580.1| cellulose synthesis regulatory protein [Escherichia coli E128010]
          Length = 558

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 545 KQAGRNR-VCASD 556


>gi|324018838|gb|EGB88057.1| diguanylate cyclase domain protein [Escherichia coli MS 117-3]
 gi|332093088|gb|EGI98152.1| cellulose synthesis regulatory protein [Shigella boydii 5216-82]
          Length = 558

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLYQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 545 KQAGRNR-VCASD 556


>gi|323180792|gb|EFZ66332.1| cellulose synthesis regulatory protein [Escherichia coli 1180]
          Length = 558

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 545 KQAGRNR-VCASD 556


>gi|209523455|ref|ZP_03272010.1| diguanylate cyclase [Arthrospira maxima CS-328]
 gi|209496197|gb|EDZ96497.1| diguanylate cyclase [Arthrospira maxima CS-328]
          Length = 396

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 95/181 (52%), Gaps = 23/181 (12%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEK----LSIVFFDIDYFKQIN 143
           +EL ++  ++ +L+ +D L+GLLN     S L    +Y+++    LSI+  DID+FK+IN
Sbjct: 220 RELLVANKKLEKLATVDELTGLLNRRFLNSRLEQEIAYHQQMGFPLSIMLIDIDHFKKIN 279

Query: 144 DNFGHPVGDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           D FGH  GD V   +A L+++ + V        R GGEEF      S   +A  +A  LR
Sbjct: 280 DQFGHLAGDYVLQKVAKLTNKFLRVNDLAF---RYGGEEFMVLLPRSEISQALDMAEGLR 336

Query: 201 KIIENSQINISSGPS-IHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254
             I     N    PS   IT S GI+E     RC    +  ++ +AD ALY AK  GRN+
Sbjct: 337 VSISQLYFNHPDIPSDFQITASFGISELTKDVRC----LDDLLKQADLALYQAKSQGRNQ 392

Query: 255 V 255
           V
Sbjct: 393 V 393


>gi|186476908|ref|YP_001858378.1| diguanylate cyclase [Burkholderia phymatum STM815]
 gi|184193367|gb|ACC71332.1| diguanylate cyclase [Burkholderia phymatum STM815]
          Length = 559

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 87/185 (47%), Gaps = 31/185 (16%)

Query: 89  ILKELFISYNRI-SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           +L E   S N + S  +R D L+G L+   F       I    +  E L +   D+D+FK
Sbjct: 367 VLAEQLQSANTLLSAEARHDALTGALSRRYFLDLLRHEIERARATGEPLCMAIADLDHFK 426

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           QIND FGH  GD+ +    D           +GRLGGEEF             IL  D  
Sbjct: 427 QINDRFGHAAGDRALEHFVDTCRTALRGSDAIGRLGGEEF------------GILLPDTP 474

Query: 201 -----KIIENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
                +++E  ++ + + P      S+ +++S GI E   ++    II RADQALY AK+
Sbjct: 475 LGTGLEVVERLRVRLKTMPSTKLPQSVGLSVSIGITELSAEDLPERIISRADQALYAAKQ 534

Query: 250 SGRNR 254
            GR+R
Sbjct: 535 GGRDR 539


>gi|74312495|ref|YP_310914.1| hypothetical protein SSON_2013 [Shigella sonnei Ss046]
 gi|114154900|sp|Q3Z0N3|YEDQ_SHISS RecName: Full=Cellulose synthesis regulatory protein
 gi|73855972|gb|AAZ88679.1| conserved hypothetical protein [Shigella sonnei Ss046]
          Length = 569

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 376 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 435

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 436 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 495

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 496 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 555

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 556 KQAGRNR-VCASD 567


>gi|28900331|ref|NP_799986.1| hypothetical protein VPA0476 [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838993|ref|ZP_01991660.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus
           AQ3810]
 gi|260363666|ref|ZP_05776459.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus K5030]
 gi|260880900|ref|ZP_05893255.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus
           AN-5034]
 gi|260896042|ref|ZP_05904538.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus
           Peru-466]
 gi|260903094|ref|ZP_05911489.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus
           AQ4037]
 gi|28808642|dbj|BAC61819.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747537|gb|EDM58473.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus
           AQ3810]
 gi|308087071|gb|EFO36766.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus
           Peru-466]
 gi|308091587|gb|EFO41282.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus
           AN-5034]
 gi|308107778|gb|EFO45318.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus
           AQ4037]
 gi|308114453|gb|EFO51993.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus K5030]
 gi|328470288|gb|EGF41199.1| hypothetical protein VP10329_05807 [Vibrio parahaemolyticus 10329]
          Length = 355

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 83/171 (48%), Gaps = 9/171 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L I   ++  L+  D L+G+ N   F       +S   +   K  +   D+D FK++ND 
Sbjct: 172 LHIQIMKMEHLATTDDLTGIPNRREFMRQIEHRLSEFRTQGIKFHVAILDLDNFKKLNDK 231

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GDK +   ++ +         + R+GGEEFA      S QEA      +R  +E 
Sbjct: 232 FGHDAGDKSLIHAANTIKGHLRECDLLARVGGEEFAIVLRSRSSQEAMDTLETIRNALET 291

Query: 206 SQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
           + I   SG  +  T S G+ + C   +    ++ RAD ALY AK++GRNRV
Sbjct: 292 TTIRY-SGRDMTFTASIGVTQVCGLDDSFEPLVKRADLALYKAKETGRNRV 341


>gi|257866840|ref|ZP_05646493.1| diguanylate cyclase [Enterococcus casseliflavus EC30]
 gi|257872644|ref|ZP_05652297.1| diguanylate cyclase [Enterococcus casseliflavus EC10]
 gi|257800798|gb|EEV29826.1| diguanylate cyclase [Enterococcus casseliflavus EC30]
 gi|257806808|gb|EEV35630.1| diguanylate cyclase [Enterococcus casseliflavus EC10]
          Length = 238

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 121/247 (48%), Gaps = 33/247 (13%)

Query: 30  YFSIF-FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY---- 84
           +F+ F FSIF+  V  + N  LFY      + +       +SL I S+ I  L  Y    
Sbjct: 8   HFTYFRFSIFVTVVSPMLNALLFYRREISVWDV-------VSLGIGSVGIVSLWKYYLQN 60

Query: 85  -------ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDID 137
                  I+  I++    +Y+ ++++     L+  ++  A         ++L +V  D+D
Sbjct: 61  QKNFLEKINTKIIER---NYDELTKVKNFRSLNEDISKLALPEK-----DQLVVVMMDLD 112

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVF--GTP---MFVGRLGGEEFAAAALGSSEQEA 192
           +FK+IND+ GH +G++ ++F S++L+      +P   + V R GGEEF      ++    
Sbjct: 113 HFKRINDHHGHQIGNQALSFFSEKLMTFLYQKSPSHLVEVYRYGGEEFLVLFKENTSDVV 172

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             +  +    + N Q+ + +   + +  SAGI+E      IS   Y+ADQALY AK+ GR
Sbjct: 173 KKIIEEFHLFLSNEQLKLETA-QLTLYFSAGISEAASALDISETFYQADQALYEAKRKGR 231

Query: 253 NRVVCFS 259
           NR + FS
Sbjct: 232 NRTIIFS 238


>gi|218554535|ref|YP_002387448.1| putative diguanylate cyclase [Escherichia coli IAI1]
 gi|218361303|emb|CAQ98887.1| putative diguanylate cyclase [Escherichia coli IAI1]
          Length = 564

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKMCQTHQHPF 430

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 551 KQAGRNR-VCASD 562


>gi|194015663|ref|ZP_03054279.1| putative diguanylate cyclase [Bacillus pumilus ATCC 7061]
 gi|194013067|gb|EDW22633.1| putative diguanylate cyclase [Bacillus pumilus ATCC 7061]
          Length = 529

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 6/163 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
             + + + ID L+ + N S+FI      L    +  +++ FDID+FKQIND  GH +GD+
Sbjct: 354 EELERRAYIDGLTNIFNRSSFIERTQMILEEDAQDTAVMLFDIDFFKQINDTHGHHIGDE 413

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  +              GR GGEEFA      S +EA  +A  +R   E S    +  
Sbjct: 414 ALRHVVTICQQHLQMDDLFGRYGGEEFAICLPHHSFEEACHIAEQIRHSFEMSFFE-NDE 472

Query: 214 PSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRV 255
             + +T S GIA   +   +  T+++ ADQALY++K+ GRN +
Sbjct: 473 EKVRVTASFGIAHTVYDPNVLETLLFEADQALYMSKRQGRNWI 515


>gi|325845181|ref|ZP_08168489.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sp. HGF1]
 gi|325488777|gb|EGC91178.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sp. HGF1]
          Length = 678

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISS-----LGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           Y + + L+R D L+GL N    +         ++N++  ++  DID+FK+IND FGH VG
Sbjct: 501 YKKANYLARYDGLTGLNNRVQVLKKGEQMLKSAHNDRCCVLMLDIDHFKKINDTFGHLVG 560

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+VI  +   L     + + +GR GGEEF     G +E +A + A  +R+ +    +   
Sbjct: 561 DEVIQKVGLLLTKKVNSNIHIGRYGGEEFVIFLQGYTESKALVFAEKIREELLTLSVKRI 620

Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
                 IT S G+ E           I+ AD A+Y +K +GRN+V  +S +EN 
Sbjct: 621 KEHFPSITASFGVYEYEQGSLSAEEGIHFADLAMYYSKTTGRNKVTPYSMLENK 674


>gi|260844354|ref|YP_003222132.1| putative diguanylate cyclase [Escherichia coli O103:H2 str. 12009]
 gi|257759501|dbj|BAI30998.1| predicted diguanylate cyclase [Escherichia coli O103:H2 str. 12009]
          Length = 564

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 551 KQAGRNR-VCASD 562


>gi|167839926|ref|ZP_02466610.1| putative transmembrane transcriptional sensor regulator
           [Burkholderia thailandensis MSMB43]
          Length = 489

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 86/171 (50%), Gaps = 16/171 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           +++L+  D L+GL N  A   +L     +       L+I+F DID+FK+ ND +GH VGD
Sbjct: 316 LARLAGTDSLTGLHNRRALDETLEREWRRAMGGARPLAILFVDIDHFKRYNDTYGHQVGD 375

Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +V+A +S    Q     G    V R GGEEF      +    A ++A  +R  +    I 
Sbjct: 376 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 433

Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                   +T+S G+A    +     PI+ I+  ADQALY AK  GRNR+V
Sbjct: 434 HEGSEVGFVTVSVGVAVWQPDGASAPPIAAIVEAADQALYQAKAGGRNRIV 484


>gi|163852769|ref|YP_001640812.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163664374|gb|ABY31741.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 667

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 14/182 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           +E+      + +LS  D L+GL N  A  S L           +   ++  D+D+FK  N
Sbjct: 216 REVVQRGEELFRLSTTDVLTGLANRRAIDSVLQELWLANVNSGQAFGVILIDVDFFKLYN 275

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMF-VGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD  +A L + +        + +GR GGEEFAA     S ++    A ++R+ 
Sbjct: 276 DRYGHQRGDSCLAALGEAMRGAADKRRYAIGRFGGEEFAALFQADSAEQVLEFAEEVRQA 335

Query: 203 IENSQINISS--GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +E  QI  ++   P  H+T+S G    A+    +P    I  AD ALYVAK+ GRNR   
Sbjct: 336 VEALQIPHAARRDPLSHVTVSIGAAFSADVADDKP-ERAISAADDALYVAKEEGRNRARI 394

Query: 258 FS 259
           F+
Sbjct: 395 FN 396


>gi|56461440|ref|YP_156721.1| signal protein [Idiomarina loihiensis L2TR]
 gi|56180450|gb|AAV83172.1| Signaling protein with membrane-bound sensor domain and GGDEF
           domain [Idiomarina loihiensis L2TR]
          Length = 398

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 90/180 (50%), Gaps = 22/180 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           +++ +L+ ID L+GL    A +S L    ++ ++   D+D+FK+ ND +GH VGD+V+  
Sbjct: 221 DQMLKLAYIDELTGLPQRRALMSQLQHLRKRSAVCMLDVDHFKKFNDRYGHEVGDQVLRL 280

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI--SSGP- 214
           L   L    G   +  R GGEEF      + E++   L   +R  + N  + +   S P 
Sbjct: 281 LGRILKEHGGFKAY--RYGGEEFTLVFFHNDEEKLKNLLESVRSQVANYPLKLREPSRPE 338

Query: 215 ----------------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV-VC 257
                           ++ +TIS G   +   +   +I+ RAD+ LY AKK+GRNRV VC
Sbjct: 339 SKTKGKEARGKKEKSKTVKVTISLGATVKEPDDTADSILKRADENLYSAKKAGRNRVSVC 398


>gi|308070120|ref|YP_003871725.1| response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Paenibacillus polymyxa E681]
 gi|305859399|gb|ADM71187.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Paenibacillus polymyxa E681]
          Length = 299

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 84/157 (53%), Gaps = 12/157 (7%)

Query: 107 DCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F    ++SL S+ E     S++  DID FK IND +GHPVGD V+  L+
Sbjct: 140 DPLTGLKNRRYFQDQLLASLMSFRESGVSFSLLIIDIDRFKSINDTYGHPVGDLVLTNLA 199

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L  +      V R GGEEF      + ++EA   A   R    ++  ++  G    IT
Sbjct: 200 ELLQSMSRDRDIVARYGGEEFVIILPDNDQEEAIHTAERYR----STTASMDWG-EYAIT 254

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +S G+A    ++   TI+++AD ALY +K  GRNRV 
Sbjct: 255 VSIGVATVTQEDTEQTIVHQADLALYASKSGGRNRVT 291


>gi|170737998|ref|YP_001779258.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3]
 gi|169820186|gb|ACA94768.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3]
          Length = 399

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 93/177 (52%), Gaps = 17/177 (9%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +  + Q SR D L+ L N   F       I   G     ++++ FD+D FK+IND FGH 
Sbjct: 218 HGELLQESRTDYLTRLGNRRRFFEEGERAIHEHGIRGLPVTLLAFDLDQFKRINDRFGHK 277

Query: 150 VGDKVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
            GD+V+   +D +  VV   T + + R+GGEEFAA   G   + A+ +A    + + N  
Sbjct: 278 TGDEVLKSFADTVRSVVDAETSVVLARIGGEEFAALLPGYDTRRASTVA----ETVANRF 333

Query: 208 INISSGPS---IHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260
             IS G     I  T+S G+AE  H+   ++ ++  ADQALY AK  G NR+V  +D
Sbjct: 334 AAISHGADDNRIRATVSIGLAESDHETASLTHLLSIADQALYRAKSLGGNRLVHATD 390


>gi|91776259|ref|YP_546015.1| diguanylate cyclase [Methylobacillus flagellatus KT]
 gi|91710246|gb|ABE50174.1| diguanylate cyclase (GGDEF domain) [Methylobacillus flagellatus KT]
          Length = 487

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 10/167 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF---ISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPV 150
           +++  ++  D L+GL N  AF   I    + NE+    L+ +  D+D+FK IND  GH  
Sbjct: 316 DKLETMATTDTLTGLPNRRAFDVVIDVFLNENERARSTLAFILLDVDHFKSINDRLGHLG 375

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  ++  +        F+ R GGEEF  A     E  A +LA  +R  IEN  I  
Sbjct: 376 GDYVLTVVARIIKGNTRAADFICRWGGEEFLIAIKDCDEHNALLLAEKIRSAIENELIAY 435

Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255
             G  + IT S G+     +  E +  ++ RAD+A+Y AK +GRN+V
Sbjct: 436 -QGSQVAITASLGVGVGVARAGEKLEPVLERADKAMYAAKAAGRNQV 481


>gi|83645901|ref|YP_434336.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83633944|gb|ABC29911.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 555

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 91/180 (50%), Gaps = 11/180 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           KEL      + +++  D L+GL N   F + L         Y   L++V  DID+FK IN
Sbjct: 367 KELDKENLELREIAARDSLTGLYNRRFFQNRLNYEFNRAKRYGSGLTLVLLDIDHFKIIN 426

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GHP GD+V+  LS  L     +   + R+GGEEF        ++      + LR  I
Sbjct: 427 DTKGHPAGDEVLIRLSSFLSQSLRSSDLIARIGGEEFCIILPEHLDEGVKTFIDRLR--I 484

Query: 204 ENSQINIS-SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E S ++    G +  +T S G+AE R        I+ +AD+ALY AK++GRNR+V  S +
Sbjct: 485 EISLLDFQHEGEAFQVTCSFGVAEYRNESSHPKDILKKADEALYQAKRTGRNRIVYESAV 544


>gi|88799529|ref|ZP_01115106.1| GGDEF domain protein [Reinekea sp. MED297]
 gi|88777839|gb|EAR09037.1| GGDEF domain protein [Reinekea sp. MED297]
          Length = 377

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 87/175 (49%), Gaps = 15/175 (8%)

Query: 96  SYNRISQLSR-------IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           SY ++++L +        D L+ LLN           +      N+ ++ +  D+D+FK+
Sbjct: 192 SYQKLNELKQDFERQASQDTLTHLLNRRGMRERIRYEVRRSQRNNQPITFILADLDHFKE 251

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND++GH  GD V+  +S  L         + R GGEEF      ++ ++A  LA  +R 
Sbjct: 252 INDHYGHDTGDTVLIQVSQLLQDSVRQQDSIARWGGEEFLFLLPETNARQAMQLAEKIRS 311

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           IIE+  +N S  P +  T+S GIAE    E   + I  AD  LY AK  GRN VV
Sbjct: 312 IIESHPLN-SDQPPLTTTMSFGIAEMLDLENHQSTIAEADNRLYQAKSQGRNCVV 365


>gi|15597967|ref|NP_251461.1| hypothetical protein PA2771 [Pseudomonas aeruginosa PAO1]
 gi|107102313|ref|ZP_01366231.1| hypothetical protein PaerPA_01003372 [Pseudomonas aeruginosa PACS2]
 gi|254241229|ref|ZP_04934551.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|9948852|gb|AAG06159.1|AE004705_1 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|126194607|gb|EAZ58670.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 341

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 103/203 (50%), Gaps = 15/203 (7%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKE----LFISYNRISQLSRIDCLSGLLNHSAF-- 118
           L E   L  +SI   L  GY+    L E    L    +R  + S +D L+ L N + F  
Sbjct: 141 LREGRQLNRLSI---LAEGYLQLRSLTEHTRFLRQEIDREQRKSLLDPLTQLWNRAGFHA 197

Query: 119 -----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                +    + ++++ I++ DID+FK+IND  GH  GD V+   + +L         + 
Sbjct: 198 LHQHELELARASDQRIGIIYSDIDHFKRINDTLGHRAGDSVLREAASRLRAALRPEDLLA 257

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEF A        E  ++AN +R+++E + I+  +G S+ +TISAG       E  
Sbjct: 258 RFGGEEFVAMVRVRETTELTMIANRIRELMEATPIDC-AGTSVPVTISAGCTLAGSGEEP 316

Query: 234 STIIYRADQALYVAKKSGRNRVV 256
              + RAD ALY AK++GRNRVV
Sbjct: 317 ERALARADAALYDAKRAGRNRVV 339


>gi|262165010|ref|ZP_06032748.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio mimicus VM223]
 gi|262027390|gb|EEY46057.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio mimicus VM223]
          Length = 461

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 90/163 (55%), Gaps = 6/163 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           ++++ LS+ D L+G+ N   F + L     +++ L+++ FDID FK+IND +GH  GD  
Sbjct: 296 HKLTLLSQTDSLTGIHNRHYFFNQLTKERDHSKSLTLMVFDIDDFKRINDTYGHGAGDSA 355

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           I  ++  +       M   R+GGEEFA    G + + + +LA  + + I   ++ ISS  
Sbjct: 356 ICLITACVRSALEPDMEFARIGGEEFAILVHGKTAEASQLLAELICQRIAEKELMISSNT 415

Query: 215 SIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256
            + +TIS G A   +  P  S  ++ AD  +Y AK  G+N+VV
Sbjct: 416 FVTLTISLGCA--FYPSPTESPTLHMADSLMYEAKGKGKNQVV 456


>gi|296137225|ref|YP_003644467.1| diguanylate cyclase [Thiomonas intermedia K12]
 gi|295797347|gb|ADG32137.1| diguanylate cyclase [Thiomonas intermedia K12]
          Length = 400

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 91/182 (50%), Gaps = 13/182 (7%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFF 134
           L  I G +L    +   R+  L+  D L+GLLN  A    L     SY  K     ++  
Sbjct: 208 LSLIYGGMLMARLV--RRLHDLALKDPLTGLLNRRAAQQLLEREWASYRHKDLPFCVLMI 265

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+IND +GH VGD+V+  L+  L         V R+GGEEF      +    A  
Sbjct: 266 DIDHFKRINDEYGHAVGDRVLTGLATLLREGTRPTDHVARMGGEEFLVFLPQTELPSAQA 325

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253
            A  LR   +++   +     + ITIS G+A+   ++     ++ RAD+ALY AK +GRN
Sbjct: 326 AAERLR---QHTAAWVLQPEELSITISIGVAQAAAEDSAFDDLLIRADRALYAAKSAGRN 382

Query: 254 RV 255
           RV
Sbjct: 383 RV 384


>gi|86159891|ref|YP_466676.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776402|gb|ABC83239.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 351

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 17/186 (9%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           ++  +L  +  R+ + +  D L+GL N  AF   L         Y++ +S++  D+D+FK
Sbjct: 155 TLQDQLRETQRRLREQTLTDDLTGLKNRRAFDERLQEEFRRAHRYSDPVSLIMIDLDHFK 214

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GHP GD V+   S+QL      P    R GGEEFA     +    A  +A  + 
Sbjct: 215 LVNDRYGHPFGDLVLRGASEQLRASTRDPDICARYGGEEFAVILPKTHLSGALAVAERIW 274

Query: 201 KIIENSQINISSG-----PSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGR 252
           K +      + +G      +I +T S GIA    K+   P + + Y AD+ALY AKK+GR
Sbjct: 275 KELSARSYPVPAGSAEPDTAIQVTASMGIAFYPSKDIGSPEALVRY-ADEALYQAKKAGR 333

Query: 253 NRVVCF 258
           N  +C 
Sbjct: 334 N-TICL 338


>gi|191169238|ref|ZP_03030991.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B7A]
 gi|190900716|gb|EDV60512.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B7A]
          Length = 558

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 545 KQAGRNR-VCASD 556


>gi|309795937|ref|ZP_07690350.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
 gi|308120387|gb|EFO57649.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
          Length = 558

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 545 KQAGRNR-VCASD 556


>gi|293374839|ref|ZP_06621141.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sanguinis
           PC909]
 gi|292646508|gb|EFF64516.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sanguinis
           PC909]
          Length = 634

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 109/222 (49%), Gaps = 27/222 (12%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
           I N ++FY   +    L  IL   +   II+++I ++LG    SI+    + + R+   +
Sbjct: 431 IGNEYIFYAIQSHQNDL--ILQRTIQYRIINMSIFMVLG----SIIIYGILKFVRLVSQN 484

Query: 105 RIDCLSGLLNHSAFIS--------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           R D L+ L N   F            G Y    SI+ FDID FK+IND +GH VGD V+ 
Sbjct: 485 RKDHLTNLYNRRYFDKIYLALKKRKKGHY----SIILFDIDDFKKINDRYGHDVGDAVLM 540

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            L+  +    G   +  R GGEEF   ++  SE+    LA  +R+ +  + ++    P+I
Sbjct: 541 SLAKTVKGELGKREYGFRYGGEEFVILSVDKSEEHVLALAESIREKVAKTIVS----PNI 596

Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             TIS GIA  R H+  + T    AD+ LY +K  G+N +  
Sbjct: 597 QFTISLGIAHSRQHEFSLKT----ADENLYHSKAQGKNTITT 634


>gi|170019712|ref|YP_001724666.1| diguanylate cyclase [Escherichia coli ATCC 8739]
 gi|169754640|gb|ACA77339.1| diguanylate cyclase [Escherichia coli ATCC 8739]
          Length = 564

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKMCQTHQHPF 430

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 551 KQAGRNR-VCASD 562


>gi|193066643|ref|ZP_03047678.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E22]
 gi|192925718|gb|EDV80377.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E22]
          Length = 558

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 545 KQAGRNR-VCASD 556


>gi|323168923|gb|EFZ54603.1| cellulose synthesis regulatory protein [Shigella sonnei 53G]
          Length = 558

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFERLQSLADRRLYLA 544

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 545 KQAGRNR-VCASD 556


>gi|301327744|ref|ZP_07220948.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|300845706|gb|EFK73466.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|320198646|gb|EFW73246.1| hypothetical protein ECoL_04070 [Escherichia coli EC4100B]
          Length = 558

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 545 KQAGRNR-VCASD 556


>gi|264677962|ref|YP_003277869.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           CNB-2]
 gi|262208475|gb|ACY32573.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           CNB-2]
          Length = 384

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 108/239 (45%), Gaps = 17/239 (7%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVII---SITISLLLGYISGSIL 90
           F+  +  T+I IA + ++++G       + ++ + L++ ++    +  S+L+ Y  G   
Sbjct: 145 FWMTWSCTLIAIA-LAVYWVGPQMRMTTDTLIGQFLTVGVMLGAVVRCSVLVTYFRGMQY 203

Query: 91  K------ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDID 137
           +      +L ++  +I  L R D L+GL N    +  L          +    I   DID
Sbjct: 204 RLSASNEKLALALKQIENLVRNDDLTGLANRRGVMDRLQQCIHAAQRRDAPFCIALLDID 263

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FKQ+ND +GH  GD+V+      L          GR GGEEF      +   +A +L  
Sbjct: 264 FFKQVNDRYGHEGGDQVLRAFGQLLSSQIRATDCAGRYGGEEFLLVLCDTPLAQAGVLLE 323

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +R+  E           + +T + G+ +    E    +I RAD A+Y  K +GRNRVV
Sbjct: 324 RIRESTEALPWTQLVHKDLRVTCTLGVTQYRQGETAEALISRADAAMYRGKAAGRNRVV 382


>gi|220926138|ref|YP_002501440.1| diguanylate cyclase/phosphodiesterase [Methylobacterium nodulans
           ORS 2060]
 gi|219950745|gb|ACL61137.1| diguanylate cyclase/phosphodiesterase [Methylobacterium nodulans
           ORS 2060]
          Length = 665

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 130/286 (45%), Gaps = 35/286 (12%)

Query: 8   FLSIWLCHEKNLESFSPH--TFMIYFSIFFSI----------------FIATVIFIANIF 49
            L+++  H  N+  +  +   FM+  ++FF+                 F++T++F    F
Sbjct: 115 LLTVFSAHSANVSYYLAYGTVFMMVSNLFFNFRFRVALLASGLITVIFFVSTLLFFQFPF 174

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL-KELFISYNRISQLSRIDC 108
            +Y+ +   Y L ++L   ++  +      + L  +   I  K+       + +LS  D 
Sbjct: 175 QYYVAIGSLYVLSFVLTIFINWKLNLERYRVFLNSMRAEIRQKQATERGEELLKLSTTDA 234

Query: 109 LSGLLNHSAFISSL----GSYNEK---LSIVFFDIDYFKQINDNFGHPVGDK---VIAFL 158
           L+GLLN  A    L    G++ E+     ++  DIDYFK  ND +GH  GD     +A +
Sbjct: 235 LTGLLNRRAIDQLLSEFWGAWKERSAAFGVILIDIDYFKMFNDYYGHQKGDACLVAVARV 294

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI----NISSGP 214
            +++    G    +GR GGEEF    L  +E + A +A D+R  I+  +I     +    
Sbjct: 295 MEEVAARHGCR--IGRFGGEEFIILLLSETEAQIAAVAEDVRGSIQVLKIPHEARLDHLA 352

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++ ++I A        +    I+  AD+ALY+AK S RN V  F +
Sbjct: 353 TVTVSIGAAFCRGIAADKPERIVTGADRALYLAKDSNRNCVKLFDE 398


>gi|114319852|ref|YP_741535.1| diguanylate cyclase with PAS/PAC sensor [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226246|gb|ABI56045.1| diguanylate cyclase with PAS/PAC sensor [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 686

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 75/158 (47%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      +L             +S+V FD+D+FK++ND  GH  GD+V+  L+
Sbjct: 529 DGLTGLYNRRHTQRALERELRLAARTGHPVSVVLFDLDHFKRVNDTHGHNAGDQVLRQLA 588

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +         VGR GGEEF     G+ E  A  LA  LR  +  ++  I       +T
Sbjct: 589 GLVTERVRDTDIVGRWGGEEFLLVLPGTDETGAGQLAEVLRAYVAEARFPIPD----PVT 644

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IS G A+    E    +  R DQALY AK +GRNR   
Sbjct: 645 ISLGYAQAGADEGADALFKRVDQALYAAKANGRNRAQA 682


>gi|159900729|ref|YP_001546976.1| diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893768|gb|ABX06848.1| diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 717

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y    QL+  D L+GL N   F++ L         YN  LS++  DIDYFKQ NDN+GH 
Sbjct: 553 YTITQQLAITDGLTGLFNQRHFMTMLDREVALAYRYNYPLSLLALDIDYFKQYNDNYGHL 612

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VG+ ++   +  +         V R GGEEF      + +  A +LA  LR  +  ++  
Sbjct: 613 VGNVLLRDFARLICENVRDVDIVSRNGGEEFTIILPKTDQAGAVLLAERLR--VRTAEHL 670

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              G   HIT+S G+A   +     T+  +ADQALY AK SGRN V+ 
Sbjct: 671 FGQG---HITVSVGVATLNNNWDAHTLHDQADQALYRAKNSGRNLVIS 715


>gi|229507700|ref|ZP_04397205.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229512105|ref|ZP_04401584.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229519240|ref|ZP_04408683.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229524220|ref|ZP_04413625.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|229528771|ref|ZP_04418161.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229607204|ref|YP_002877852.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|229332545|gb|EEN98031.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229337801|gb|EEO02818.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|229343929|gb|EEO08904.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229352070|gb|EEO17011.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229355205|gb|EEO20126.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229369859|gb|ACQ60282.1| GGDEF family protein [Vibrio cholerae MJ-1236]
          Length = 495

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 21/170 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  ++  D L+G  N   F       IS     +  LS+   D+D+FKQ+NDN+GHP 
Sbjct: 334 KRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPA 393

Query: 151 GD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GD    +V+A     +  V GT   + R GGEEF       ++QEA      +R  I   
Sbjct: 394 GDLVLQRVVALCQRHIAQV-GT---LCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMH 449

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               +S P   +T+S G+ +    E +  +  RADQA+Y AK  GRN+VV
Sbjct: 450 ----ASQP--QVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 493


>gi|326790479|ref|YP_004308300.1| diguanylate cyclase with GAF sensor [Clostridium lentocellum DSM
           5427]
 gi|326541243|gb|ADZ83102.1| diguanylate cyclase with GAF sensor [Clostridium lentocellum DSM
           5427]
          Length = 707

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 87/178 (48%), Gaps = 10/178 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISS---LGSYNEKLS----IVFFDIDYFKQINDNFGHP 149
           Y++   L   D L+GLLN  A +     L   N K      ++  D DYFKQ+ND +GH 
Sbjct: 531 YHQAEYLGMHDSLTGLLNRGALLKQGEILFKKNHKQHKSTVVMMLDTDYFKQVNDRYGHQ 590

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD+V+  +   L  V     +VGR GGEEF       SE+E   +   ++K +  S   
Sbjct: 591 LGDEVLKKIGKILKKVVRKQDYVGRYGGEEFLVILDDLSEKEVVKVCQRIKKALSESCFE 650

Query: 210 ISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                 I +T+S G    C++  +  S  I  AD ALY AK  GRNR++ +   EN +
Sbjct: 651 TKKDTKIKVTVSGGFY-ICNEYTLNFSDAIQFADHALYRAKLLGRNRMISYCLGENES 707


>gi|323703343|ref|ZP_08114993.1| diguanylate cyclase [Desulfotomaculum nigrificans DSM 574]
 gi|323531706|gb|EGB21595.1| diguanylate cyclase [Desulfotomaculum nigrificans DSM 574]
          Length = 353

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 22/201 (10%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
           N+ L + +I +SL L     +IL +      ++  LS  D L+ L NH  F   L     
Sbjct: 159 NMILELFTIQVSLAL---ENAILNK------KLEALSITDALTRLYNHRYFAEVLQKQIT 209

Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 ++LS++  D+D FK+ ND++GHP GD V+  +    +          R GGEEF
Sbjct: 210 VSRQTKKELSLIMVDMDNFKEYNDSYGHPAGDLVLKLMGKIFMEHIRPGDVAARYGGEEF 269

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYR 239
           A    G+  ++   LA  +R  +E+++      P   +T S GIA    H +  + ++  
Sbjct: 270 ALILPGTPLKDGLALAEKIRLAVESTKF-----PHRLVTASFGIANFPTHCDNPADLLEL 324

Query: 240 ADQALYVAKKSGRNRVVCFSD 260
           ADQALY AK  GRN+V  + D
Sbjct: 325 ADQALYAAKTGGRNQVFIYGD 345


>gi|293446335|ref|ZP_06662757.1| cellulose synthesis regulatory protein [Escherichia coli B088]
 gi|332278877|ref|ZP_08391290.1| cellulose synthesis regulatory protein [Shigella sp. D9]
 gi|291323165|gb|EFE62593.1| cellulose synthesis regulatory protein [Escherichia coli B088]
 gi|332101229|gb|EGJ04575.1| cellulose synthesis regulatory protein [Shigella sp. D9]
          Length = 569

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 376 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 435

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 436 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 495

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 496 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 555

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 556 KQAGRNR-VCASD 567


>gi|284044593|ref|YP_003394933.1| response regulator receiver modulated diguanylate cyclase
           [Conexibacter woesei DSM 14684]
 gi|283948814|gb|ADB51558.1| response regulator receiver modulated diguanylate cyclase
           [Conexibacter woesei DSM 14684]
          Length = 676

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 8/162 (4%)

Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+G+ N S+    L         + E L++   D+D FK +ND +GH +GD V+
Sbjct: 377 LAETDALTGVANRSSSTQKLERLVQLAHRFGEALTLAIIDLDEFKAVNDRYGHALGDAVL 436

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             + D L   F     +GR GGEEF     G + ++A     DL     +       G  
Sbjct: 437 QRMGDVLRQAFRGEDVIGRWGGEEFVVGMYGMTREDAQQRLLDLLAEFTSVPFAADDGEP 496

Query: 216 IHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVV 256
             ++ SAG+A+R    E I+ +   AD ALY AK++GR+RV+
Sbjct: 497 FTVSFSAGVAQRGVDGESITALHRAADAALYRAKEAGRSRVL 538


>gi|229168789|ref|ZP_04296508.1| Sensory box/GGDEF family protein [Bacillus cereus AH621]
 gi|228614637|gb|EEK71743.1| Sensory box/GGDEF family protein [Bacillus cereus AH621]
          Length = 430

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 104/219 (47%), Gaps = 33/219 (15%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           F F +  TP       L E+LS  I+  T            + EL   Y    +L+ ID 
Sbjct: 231 FTFLLRATP-------LPEDLSRFIVKCTE-----------ITELDEIYQEQERLAMIDS 272

Query: 109 LSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ + N   F   L +        +EK++++ FDID FK +ND +GH  GD  +  L+D 
Sbjct: 273 LTEIYNRLKFQQILETEWENVLRNDEKVALILFDIDNFKSVNDTYGHDFGDLALVQLADL 332

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +           R GGEEF      + E+EA  +A  LR  IE  Q    SG S  +T S
Sbjct: 333 MKSKVEDQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF---SGIS-KLTAS 388

Query: 222 AGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCF 258
            G+A   H+  I+   ++ RAD ALY AKK+G+N+V  +
Sbjct: 389 FGVA--LHENGITKEELMQRADIALYEAKKNGKNQVCIY 425


>gi|78062557|ref|YP_372465.1| diguanylate cyclase [Burkholderia sp. 383]
 gi|77970442|gb|ABB11821.1| diguanylate cyclase (GGDEF domain) [Burkholderia sp. 383]
          Length = 602

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 92/171 (53%), Gaps = 17/171 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +++  D L+ L N  AF       + ++ +  +  +++  D+D+FK +ND +GHPVGD
Sbjct: 435 LHRMATTDHLTQLSNRHAFMRQSEAALRAVRTTGQAAAVLMLDLDHFKALNDRWGHPVGD 494

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +   +  L+   G    VGR+GGEEFA    G+    A   A  +++    +++    
Sbjct: 495 RALRHFARLLLAETGPDGIVGRVGGEEFAIVLPGADLDRALAFAQRVQQRAMQARLTHED 554

Query: 213 GPSIHITISAGI-AERCHK----EPISTIIYRADQALYVAKKSGRNRVVCF 258
            P + +T+S GI A R       +P+S    RAD+ALY+AK+ GRNR+  +
Sbjct: 555 QP-VTLTVSIGIDAMRASDFGAYQPLS----RADKALYLAKERGRNRIEVY 600


>gi|330972150|gb|EGH72216.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 690

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIV--FFDIDYFKQINDNFGHPVGDKV 154
           Q + ID L+GL N +A+   L       + EK S++    D+D+FK+IND +GH  GDKV
Sbjct: 528 QKALIDPLTGLPNRAAWGERLEREMARWHEEKNSLLVCILDLDHFKRINDGYGHLAGDKV 587

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +++ L        F+ R GGEEF      +       L ++LR  +E+   +   G 
Sbjct: 588 LKIVANVLGKRLRADDFMARFGGEEFVMLLPATPPATGLKLLDELRAAVESCPFHF-KGE 646

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT+S G+      E   T I RADQALY AK++GRNR+
Sbjct: 647 RVTITVSIGMTAFRPSERSDTAIKRADQALYKAKENGRNRI 687


>gi|262173736|ref|ZP_06041413.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio mimicus MB-451]
 gi|261891094|gb|EEY37081.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio mimicus MB-451]
          Length = 461

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 90/163 (55%), Gaps = 6/163 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           ++++ LS+ D L+G+ N   F + L     +++ L+++ FDID FK+IND +GH  GD  
Sbjct: 296 HKLTLLSQTDSLTGIHNRHYFFNQLTKERDHSKSLTLMVFDIDDFKRINDTYGHGAGDSA 355

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           I  ++  +       M   R+GGEEFA    G + + + +LA  + + I   ++ ISS  
Sbjct: 356 ICLITACVRSALEPDMEFARIGGEEFAILVHGKTAEASQLLAELICQRIAEKELMISSNT 415

Query: 215 SIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256
            + +TIS G A   +  P  S  ++ AD  +Y AK  G+N+VV
Sbjct: 416 FVTLTISLGCA--FYPSPTESPTLHMADSLMYEAKGKGKNQVV 456


>gi|297568215|ref|YP_003689559.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924130|gb|ADH84940.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2]
          Length = 519

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 84/168 (50%), Gaps = 14/168 (8%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            QL+  D L+GL N   F   L           + LS++ FDID+FK++ND +GH  GD 
Sbjct: 348 DQLAGTDQLTGLNNRRRFKELLDQELIRYRRIPKPLSLLIFDIDHFKRVNDTYGHETGDL 407

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  ++  L           R GGEEF      ++ + A  LA  LR+ IE         
Sbjct: 408 VLKEMAQLLQATVRRTDTPARWGGEEFLVLLPATTAEAAMALAEKLRQAIEEHDF----- 462

Query: 214 PSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           P +  +T S G+A     ++  S ++ R D+ALY AK+ GRNRVV ++
Sbjct: 463 PRVGRVTASFGVAAFHDGEQEESALLRRVDKALYQAKRQGRNRVVNWA 510


>gi|260868548|ref|YP_003234950.1| putative diguanylate cyclase [Escherichia coli O111:H- str. 11128]
 gi|257764904|dbj|BAI36399.1| predicted diguanylate cyclase [Escherichia coli O111:H- str. 11128]
          Length = 564

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 551 KQAGRNR-VCASD 562


>gi|256017851|ref|ZP_05431716.1| diguanylate cyclase [Shigella sp. D9]
          Length = 558

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 545 KQAGRNR-VCASD 556


>gi|170720802|ref|YP_001748490.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas putida
           W619]
 gi|169758805|gb|ACA72121.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida W619]
          Length = 796

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 14/206 (6%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           P  GL ++  E  +  +     +L  GY++   + +L      +  LS  D L+G+ N  
Sbjct: 593 PKSGLRWVRGE-ATPEVGEDGCTLWHGYLTD--ISDLKGVEEDLRTLSVTDALTGIHNRR 649

Query: 117 AFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            F   L +        +++L+++  DID+FK+IND +GH VGD V+  L  ++       
Sbjct: 650 YFQERLKAELDRAQRDDQELAVIMLDIDHFKRINDQYGHAVGDHVLRSLCQRIGQRLRRT 709

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               RLGGEEF     GS+ ++A +LA +L + + N  ++        +T S G+A    
Sbjct: 710 DVFCRLGGEEFMVLCPGSNAEQARLLAMELWQGVRNLPVDGVG----KVTASFGVAGWRP 765

Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255
            E    ++ RAD  +Y AK++GR+RV
Sbjct: 766 GEGADALLLRADAGVYAAKQAGRDRV 791


>gi|313681484|ref|YP_004059222.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM
           16994]
 gi|313154344|gb|ADR33022.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM
           16994]
          Length = 458

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 87/173 (50%), Gaps = 10/173 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           + EL+   N + Q +  D L+G+ N   F       I++    N  LS+V FD+D FK +
Sbjct: 284 VDELYSMTNTLEQKAYKDKLTGINNRENFEDIFALEIATAKQNNIPLSLVIFDVDNFKLV 343

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD ++  L   +           R GGEEF      +    A  LA +LRK+
Sbjct: 344 NDTYGHQAGDTILIDLVKLIEDNIKNGDIFARWGGEEFVILTPSTDINGACNLAENLRKL 403

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   Q++  S     +T+S G+A+    +   T+  +AD ALY AKK+GRNRV
Sbjct: 404 V---QLHPFSYVENQMTLSFGVAQLSDDDNKKTLFEKADGALYEAKKNGRNRV 453


>gi|238794811|ref|ZP_04638413.1| Diguanylate cyclase [Yersinia intermedia ATCC 29909]
 gi|238725891|gb|EEQ17443.1| Diguanylate cyclase [Yersinia intermedia ATCC 29909]
          Length = 395

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 101/180 (56%), Gaps = 22/180 (12%)

Query: 89  ILKELFISYNRISQLSRI-------DCLSGLLNHSAFISSLG------SYNEKLSIVFFD 135
           +L+EL +  + ++Q +         D L+GL N + F   L       + +E+L+++F D
Sbjct: 200 LLEELEVWQDHLTQENDFLAHRAAHDSLTGLANRAFFEGRLSRTLSDCAADEQLAVLFID 259

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAA 193
            D+FK+INDN+GH  GD V+  ++D++  +      V RLGG+EFA   A + +++ +  
Sbjct: 260 GDHFKEINDNYGHAAGDLVLTAIADRIRSLLRETDLVARLGGDEFAVLLAPIHNTD-DVL 318

Query: 194 ILANDLRKIIE--NSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKS 250
            +AN   KII+  N  I++  G  I  +IS GIA    H +    ++ RAD+A+Y AKKS
Sbjct: 319 TIAN---KIIDSMNQPIDLVDGSEITTSISIGIAIYPDHAQTPEDLLQRADEAMYQAKKS 375


>gi|217976613|ref|YP_002360760.1| response regulator receiver modulated diguanylate cyclase
           [Methylocella silvestris BL2]
 gi|217501989|gb|ACK49398.1| response regulator receiver modulated diguanylate cyclase
           [Methylocella silvestris BL2]
          Length = 469

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 88/162 (54%), Gaps = 11/162 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++ ID L+GL N   F     S  E+       LS++ FDID+FK +ND  GH  GD++
Sbjct: 290 EMAVIDALTGLHNRRFFDGVFPSLMEEAKRKARPLSVMMFDIDHFKSVNDAHGHEAGDRL 349

Query: 155 IAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  L+ ++  +V G+ MF  RL G+EF      +     A +A  +R  +  +   I   
Sbjct: 350 LQGLAGRVKGLVRGSDMFC-RLSGDEFVILMPDTRVDIGAKVAERVRAGVAGAAFPIGKA 408

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S+  TIS G+AE  H  P   ++  AD+ALY +K++GRNRV
Sbjct: 409 HSLSTTISIGLAESAHAGP--DLLREADRALYRSKEAGRNRV 448


>gi|152999836|ref|YP_001365517.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|151364454|gb|ABS07454.1| diguanylate cyclase [Shewanella baltica OS185]
          Length = 581

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 11/176 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           +   +  +++R+D L+G+LN  A        F+ +     +   ++ FD+D+FK+IND+F
Sbjct: 389 MQKRKFMRMARMDALTGILNRGAGQELGENLFVQATARGGD-FCVILFDLDFFKRINDSF 447

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD  +  + D L           R+GGEEFA     + E++   +A   R  IE  
Sbjct: 448 GHGTGDWALKKVVDSLKSHIRNGDVFARIGGEEFAILLPYADEEKGMEVAEQCRARIEAI 507

Query: 207 QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                SG    IT S G++     +  +  + +RAD ALY AK +GRN VV +SDI
Sbjct: 508 DTQ-HSGHKFVITASFGVSGLMADDLSLDPLFHRADMALYAAKANGRNAVVRYSDI 562


>gi|114778329|ref|ZP_01453188.1| Signaling protein with a GGDEF domain [Mariprofundus ferrooxydans
           PV-1]
 gi|114551431|gb|EAU53987.1| Signaling protein with a GGDEF domain [Mariprofundus ferrooxydans
           PV-1]
          Length = 308

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 8/165 (4%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+ +D L+G  N    ++ L    E         SI   D+D+FKQ+ND +GH +GD V+
Sbjct: 140 LNNLDPLTGAYNRFGMMAFLHEQQELVARGVNSCSIAMLDLDFFKQVNDQYGHKMGDHVL 199

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L+        + R GGEEF A    ++ + A ++A  +RK +E++ I I   P 
Sbjct: 200 TSIASTLLKGLRPYDKLFRYGGEEFVAVFPNTAVESALLVAERVRKYVEDTIIEIDKLP- 258

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + IT+S GIA       +   + +AD A+Y AK++GRN+V  + +
Sbjct: 259 VRITVSVGIAAIDANTSVEISVEQADIAMYTAKQNGRNQVKLWEN 303


>gi|109898002|ref|YP_661257.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109700283|gb|ABG40203.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
          Length = 560

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 78/128 (60%), Gaps = 4/128 (3%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L +++ D+DYFK+INDNFGH  GD+V+  ++  +         VGRLGG+EF A A    
Sbjct: 432 LCLLYIDLDYFKEINDNFGHKAGDQVLRIMAKIIRKQMRDQDAVGRLGGDEFVALAQFED 491

Query: 189 EQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKE-PISTIIYRADQALYV 246
           E+++ IL   + K ++N  INIS+  + I +T S G       E  +S ++ +ADQA+Y+
Sbjct: 492 ERQSEILRERVTKRLKN--INISTDSAQIRVTASVGCVVFSDNEISVSEMLQKADQAMYM 549

Query: 247 AKKSGRNR 254
           +K+  +++
Sbjct: 550 SKRENQDK 557


>gi|325845416|ref|ZP_08168711.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sp. HGF1]
 gi|325488566|gb|EGC90980.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sp. HGF1]
          Length = 634

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 109/222 (49%), Gaps = 27/222 (12%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
           I N ++FY   +    L  IL   +   II+++I ++LG    SI+    + + R+   +
Sbjct: 431 IGNEYIFYAIQSHQNDL--ILQRTIQYRIINMSIFMVLG----SIIIYGILKFVRLVSQN 484

Query: 105 RIDCLSGLLNHSAFIS--------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           R D L+ L N   F            G Y    SI+ FDID FK+IND +GH VGD V+ 
Sbjct: 485 RKDHLTNLYNRRYFDKIYLALKKRKKGHY----SIILFDIDDFKKINDRYGHDVGDAVLM 540

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            L+  +    G   +  R GGEEF   ++  SE+    LA  +R+ +  + ++    P+I
Sbjct: 541 SLAKTVKGELGKREYGFRYGGEEFVILSVDKSEEHVLALAESIREKVAKTIVS----PNI 596

Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             TIS GIA  R H+  + T    AD+ LY +K  G+N +  
Sbjct: 597 QFTISLGIAHSRQHEFSLKT----ADENLYHSKAQGKNTITT 634


>gi|307545291|ref|YP_003897770.1| diguanylate cyclase [Halomonas elongata DSM 2581]
 gi|307217315|emb|CBV42585.1| diguanylate cyclase [Halomonas elongata DSM 2581]
          Length = 572

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 116/253 (45%), Gaps = 38/253 (15%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK-- 91
           FFS+ + T + +A+      GL P++ +  +    L  V+  +TISLL    +   LK  
Sbjct: 331 FFSLLLVTDMAVAH------GLLPWFRVP-VSSGALIFVLALVTISLLEYNRTHQELKRL 383

Query: 92  -------------ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSI 131
                        EL     R+   S  D L+GL N   F   L     +       L++
Sbjct: 384 NLRLEQEVAQRTGELQTLVKRLESFSYTDPLTGLHNRRYFTKLLEQSTAQAQRQGYPLTL 443

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA----AALGS 187
           +  DID+FKQIND +GH  GD V+A ++  L   F     V RLGGEEFA         +
Sbjct: 444 LMIDIDHFKQINDRYGHEAGDSVLAAIAHCLSQYFREADVVCRLGGEEFAVLMHNTETSA 503

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYV 246
            ++ A  L   L   +++ Q  I  GP   +TIS GIA    H      ++  AD+ALY 
Sbjct: 504 VKERAEALLKTLACTVQHHQ-QIPLGP---VTISCGIASYPLHAVNPQALVGLADKALYN 559

Query: 247 AKKSGRNRVVCFS 259
           AK +GR R+  ++
Sbjct: 560 AKHAGRARIHVYA 572


>gi|293376697|ref|ZP_06622920.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sanguinis
           PC909]
 gi|292644654|gb|EFF62741.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sanguinis
           PC909]
          Length = 703

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISS-----LGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           Y + + L+R D L+GL N    +         ++N++  ++  DID+FK+IND FGH VG
Sbjct: 526 YKKANYLARYDGLTGLNNRVQVLKKGEQMLKSAHNDRCCVLMLDIDHFKKINDTFGHLVG 585

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+VI  +   L     + + +GR GGEEF     G +E +A + A  +R+ +    +   
Sbjct: 586 DEVIQKVGLLLTKKVNSNIHIGRYGGEEFVIFLQGYTESKALVFAEKIREELLTLSVKRI 645

Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
                 IT S G+ E           I+ AD A+Y +K +GRN+V  +S +EN 
Sbjct: 646 KEHFPSITASFGVYEYEQGSLSAEEGIHFADLAMYYSKTTGRNKVTPYSMLENK 699


>gi|258624539|ref|ZP_05719481.1| extracellular solute-binding protein, family 3/GGDEF domain protein
           [Vibrio mimicus VM603]
 gi|258583192|gb|EEW07999.1| extracellular solute-binding protein, family 3/GGDEF domain protein
           [Vibrio mimicus VM603]
          Length = 463

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 4/162 (2%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           ++++ LS+ D L+G+ N   F + L     +++ L+++ FDID FK+IND +GH  GD  
Sbjct: 298 HKLTLLSQTDSLTGIHNRHYFFNQLTKERDHSKSLTLMVFDIDDFKRINDTYGHGAGDSA 357

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           I  ++  +       M   R+GGEEFA    G + + +  LA  + + I   ++ ISS  
Sbjct: 358 ICLITACVRSALEPDMEFARIGGEEFAILVHGKTAEASQQLAELICQRIAEKELMISSNT 417

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            + +TIS G A   H    S  ++ AD  +Y AK  G+N+VV
Sbjct: 418 FVTLTISLGCA-FYHSPTESPTLHMADSLMYEAKGKGKNQVV 458


>gi|222085563|ref|YP_002544093.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
 gi|221723011|gb|ACM26167.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
          Length = 466

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 98/194 (50%), Gaps = 19/194 (9%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           +SG +L E    + R   +S  D L+G+LN           +      + K++++ FD+D
Sbjct: 248 LSGRLLMERAERHWRT--ISITDMLTGVLNRRGLQDYLPLVVKKAARGSHKIAVLLFDLD 305

Query: 138 YFKQINDNFGHPVGDKVI---AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           +FK IND +GH  GD V+   A +  Q +   G     GR+GGEEF A    + + EA  
Sbjct: 306 HFKAINDRYGHQTGDTVLAEFARIGRQFIPESGA---FGRMGGEEFIAFIPVADQAEAEA 362

Query: 195 LANDLRKIIENSQINISSGPS-IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252
           +A  +R   E  +  + +G S +  T+S G+A   C       ++  AD+ALY AK++GR
Sbjct: 363 IAETVRA--EVCRAPLLAGQSFVSATVSVGLAIMPCGSANWDRLVSAADRALYAAKRAGR 420

Query: 253 NRVVCFSDIENNTC 266
           N  V F + E +T 
Sbjct: 421 NCTVVFGEAEASTA 434


>gi|242280753|ref|YP_002992882.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio salexigens DSM 2638]
 gi|242123647|gb|ACS81343.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio salexigens DSM 2638]
          Length = 412

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 80/159 (50%), Gaps = 11/159 (6%)

Query: 107 DCLSGLLNHSAFI--------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+GL N   F           + + NE L +V  DID+FK+IND +GH  GD+V+   
Sbjct: 255 DYLTGLWNRRYFFEYGTPIYEQGMTAGNE-LCVVMLDIDHFKKINDTYGHDAGDEVLKDF 313

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           S  L    G    V R GGEEF     G    E      D R+ + +  ++   G  I +
Sbjct: 314 SSLLADYIGDVGLVSRFGGEEFTVLLNGIQADELFDFLEDFREEVGSFSVDF-KGQVITL 372

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           T+S G A     E ++ ++ RAD  LY AK++GRN+V+C
Sbjct: 373 TVSIG-ATANMDESLTVMVSRADDKLYEAKRTGRNKVLC 410


>gi|217974203|ref|YP_002358954.1| diguanylate cyclase [Shewanella baltica OS223]
 gi|217499338|gb|ACK47531.1| diguanylate cyclase [Shewanella baltica OS223]
          Length = 581

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 11/176 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           +   +  +++R+D L+G+LN  A        F+ +     +   ++ FD+D+FK+IND+F
Sbjct: 389 MQKRKFMRMARMDALTGILNRGAGQELGENLFVQATARGGD-FCVILFDLDFFKRINDSF 447

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD  +  + D L           R+GGEEFA     + E++   +A   R  IE  
Sbjct: 448 GHGTGDWALKKVVDSLKSHIRNGDVFARIGGEEFAILLPYADEEKGMEVAEQCRARIEAI 507

Query: 207 QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                SG    IT S G++     +  +  + +RAD ALY AK +GRN VV +SDI
Sbjct: 508 DTQ-HSGHKFVITASFGVSGLMADDLSLDPLFHRADMALYAAKANGRNAVVRYSDI 562


>gi|121596400|ref|YP_988296.1| diguanylate cyclase [Acidovorax sp. JS42]
 gi|120608480|gb|ABM44220.1| diguanylate cyclase [Acidovorax sp. JS42]
          Length = 382

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 7/173 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           +EL  +  +I +L+  D L+GL N    +  +           + L +   D+D+FK +N
Sbjct: 207 RELAAAVEQIRELAVRDELTGLPNRRYMLEMMRLEHARAQRSRQPLLLAQLDLDHFKAVN 266

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD  +   +  +         + R GGEEF      +   +   L   +R  +
Sbjct: 267 DTHGHAAGDVALQSFAQTVHGCVRASDLLARWGGEEFLLLMANTHPADGTRLLERVRATV 326

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             + + +  G  + +T+S G+AE  H E  + ++ RAD ALY AK+ GRNRV+
Sbjct: 327 AATPVALPGGTQLSLTVSVGLAELAHGESTAALLQRADAALYGAKRLGRNRVL 379


>gi|94499135|ref|ZP_01305673.1| hypothetical protein RED65_10114 [Oceanobacter sp. RED65]
 gi|94428767|gb|EAT13739.1| hypothetical protein RED65_10114 [Oceanobacter sp. RED65]
          Length = 378

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 9/162 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+G+ N   F       +++       LS++  DID+FK +ND +GH  GD  +
Sbjct: 202 LASYDPLTGVFNRRGFFDQWQILSKRTHDKSCHLSVMMIDIDHFKHVNDKYGHEAGDAAL 261

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
            +L+D L         + R+GGEEFA    G    +A I+A  LR  I  ++  +     
Sbjct: 262 KWLADLLAHELRENDVLARMGGEEFAVMLPGCESSQAEIVAERLRNCIFKTRF-VYLNQV 320

Query: 216 IHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           I ITIS G I E      I  ++ +AD+ LY AK  GRNR +
Sbjct: 321 IPITISLGFITEDQPITDIKGLLVQADKGLYKAKDLGRNRAM 362


>gi|145298286|ref|YP_001141127.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851058|gb|ABO89379.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 529

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 82/168 (48%), Gaps = 19/168 (11%)

Query: 103 LSRIDCLSGLLNHSAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           LS  D L+G  N   F       L +   ++ +V FD D+FKQ+ND FGH VGD+V+  L
Sbjct: 364 LSSHDALTGTYNRHYFDEFERLHLRAKAREVGVVMFDCDHFKQVNDRFGHEVGDQVLIRL 423

Query: 159 SDQLVVVFGTPMFVG-----RLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISS 212
                V    P+        R GGEEF   A G    E   LA  LR +I E+    I+ 
Sbjct: 424 -----VTLCQPLLKKEDALIRWGGEEFLLLARGREPLEQ--LAERLRLQIAEHPWEEIA- 475

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            P + +TIS G        P+   I+RAD ALY AK +GRNR   + D
Sbjct: 476 -PDLAVTISLGYHHCRAGTPLKEAIHRADLALYQAKANGRNRSEGWQD 522


>gi|194433689|ref|ZP_03065965.1| diguanylate cyclase (GGDEF) domain protein [Shigella dysenteriae
           1012]
 gi|194418118|gb|EDX34211.1| diguanylate cyclase (GGDEF) domain protein [Shigella dysenteriae
           1012]
 gi|332095505|gb|EGJ00521.1| cellulose synthesis regulatory protein [Shigella dysenteriae
           155-74]
          Length = 558

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 545 KQAGRNR-VCASD 556


>gi|302877329|ref|YP_003845893.1| diguanylate cyclase [Gallionella capsiferriformans ES-2]
 gi|302580118|gb|ADL54129.1| diguanylate cyclase [Gallionella capsiferriformans ES-2]
          Length = 454

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 71/127 (55%), Gaps = 5/127 (3%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  DID+FK+IND FGHP GD+V+  LS+++     T     R GGEEF      +  
Sbjct: 330 SVLMLDIDFFKKINDVFGHPFGDEVLKTLSNRVKRRLRTSDVFARWGGEEFVVLLPTADI 389

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
             A++LA  +R  I +S +         +T+S G+AE    E    ++ R D ALY AK 
Sbjct: 390 NAASVLAERIRAEIADSPV-----FEHQVTVSIGVAEYQRGESQEALLQRVDIALYEAKN 444

Query: 250 SGRNRVV 256
           SGRN+VV
Sbjct: 445 SGRNKVV 451


>gi|225850346|ref|YP_002730580.1| response regulator [Persephonella marina EX-H1]
 gi|225645679|gb|ACO03865.1| response regulator [Persephonella marina EX-H1]
          Length = 615

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 9/169 (5%)

Query: 99  RISQLSRIDCLSGLLNH---SAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ + S +D L+GL N       I  L          + I+  D+D+FKQ+ND +GH VG
Sbjct: 439 KLRKQSLVDQLTGLYNRRFLEELIPKLSQQTIRRKSTIGILMVDVDFFKQVNDQYGHDVG 498

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++D L         V R GGEEF    +   + ++  +A  +RK +EN  I+ +
Sbjct: 499 DTVLKRVADILNKSVREADIVVRYGGEEFIVLLVDVEKGKSVEIAEKIRKKVENMVIH-T 557

Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            G ++  T+S G++E  H  +     I  AD ALY AK++GRN+VV F 
Sbjct: 558 DGVTLKKTVSIGVSEFPHDSDRFWQCIKFADIALYRAKETGRNKVVRFE 606


>gi|206576174|ref|YP_002238571.1| putative membrane-bound diguanylate cyclase [Klebsiella pneumoniae
           342]
 gi|288935556|ref|YP_003439615.1| diguanylate cyclase [Klebsiella variicola At-22]
 gi|290509592|ref|ZP_06548963.1| membrane-bound diguanylate cyclase [Klebsiella sp. 1_1_55]
 gi|206565232|gb|ACI07008.1| putative membrane-bound diguanylate cyclase [Klebsiella pneumoniae
           342]
 gi|288890265|gb|ADC58583.1| diguanylate cyclase [Klebsiella variicola At-22]
 gi|289778986|gb|EFD86983.1| membrane-bound diguanylate cyclase [Klebsiella sp. 1_1_55]
          Length = 474

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 77/135 (57%), Gaps = 6/135 (4%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           ++ L+++  DID FK++ND  GH  GD V+   + Q+  +      V R+GGEEFA AA+
Sbjct: 331 DKLLTVMVLDIDGFKRVNDALGHEGGDCVLTQFAQQVRQLVDEQGMVARIGGEEFAVAAV 390

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CH---KEPISTIIYRA 240
             S Q+  +LA  +R  +E+    +   P IH+TIS G+  R   H    E  + ++  A
Sbjct: 391 VDSTQQGYLLAEKIRHGVESQPFGLGQNP-IHLTISMGLETREVGHARITELFNQLLMAA 449

Query: 241 DQALYVAKKSGRNRV 255
           D+ +  AK++GRNR+
Sbjct: 450 DEEMVKAKQTGRNRI 464


>gi|330807327|ref|YP_004351789.1| response regulator, PleD family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375435|gb|AEA66785.1| Putative response regulator, PleD family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 556

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 83/157 (52%), Gaps = 10/157 (6%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +  L           + LS    DID+FK++ND+ GHP+GD+VI  L+
Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRARREGKPLSFAMLDIDHFKRVNDSHGHPMGDRVIKSLA 438

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218
             L        F+GR GGEEFA     +    A  + +++R+    ++I+  + P  +  
Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIDAACKVLDEIRQRF--AEIHYPAQPHDLWC 496

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T SAG+ E         +  +AD+ALY AK +GRNRV
Sbjct: 497 TFSAGVVEMSDDSDSLMMASQADEALYRAKHAGRNRV 533


>gi|324119004|gb|EGC12893.1| diguanylate cyclase domain-containing protein [Escherichia coli
           E1167]
          Length = 564

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLYQTHQHPF 430

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 551 KQAGRNR-VCASD 562


>gi|229916749|ref|YP_002885395.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
 gi|229468178|gb|ACQ69950.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
          Length = 378

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 105/217 (48%), Gaps = 19/217 (8%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI----------DCLSGLLNHS 116
           E  S  +I++   L +GY +G  L  ++    +I +  R+          D L+GL N  
Sbjct: 162 EEPSAYVITLIWFLFIGYATGLFLHIVYGGIRKIERSRRLITKYKEAAYTDTLTGLGNRR 221

Query: 117 AFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            F   +   +E+       ++++  DID+FK +ND +GH  GD ++  L  +L  +    
Sbjct: 222 QFDEEMKRVDEEVFTSPHEIALLLIDIDHFKSVNDTYGHDAGDAILVELGQRLSGIARAD 281

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
             V R GGEEF+      +  +A  +AN     +      +     + +TIS G++    
Sbjct: 282 DMVCRNGGEEFSVLLADCNLPQAISIANRYLTEVSKQPFQLPDEAMLDVTISIGVSSTSE 341

Query: 230 KEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENN 264
           ++ I++  +I +AD  LYVAK++GRNR+  ++  + N
Sbjct: 342 RKVITSAQLIKKADIGLYVAKRNGRNRIGKWNQRKAN 378


>gi|117618387|ref|YP_856882.1| sensory box protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559794|gb|ABK36742.1| sensory box/GGDEF domain protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 431

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 116/253 (45%), Gaps = 26/253 (10%)

Query: 17  KNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI--LVENLSLVII 74
           K LE+  P  F      +F  F  + I             P +    +  L  + S   +
Sbjct: 179 KRLETLLPQRFRANHDGYFKAFSNSPI----------NSRPMHARASVMGLRRDGSEFPL 228

Query: 75  SITISLL-LGYIS--GSILKELFISYNRISQL---SRIDCLSGLLNHSAF-------ISS 121
            +TI+ + LG  +   +IL+++      + +L   +  D L+G+ N   F       +  
Sbjct: 229 EVTIAKINLGQTTEMTAILRDISERARLVEELKVAATTDPLTGIANRRRFDELVKLEMQR 288

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +   +S++  DID+FKQIND +GH  GD+ I  L  ++         +GR GGEEF 
Sbjct: 289 CQRFGHTMSLLLIDIDHFKQINDTYGHQQGDQAILSLVRRVAKQLREVDMLGRWGGEEFI 348

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRA 240
                +S + A   A  +R  +E+    + +G  + +TIS GI A    ++ +  ++ RA
Sbjct: 349 VLLPETSLELAWASAERIRLAVESQLHQLGAGTEVPLTISIGISASLGPQDTVERMVRRA 408

Query: 241 DQALYVAKKSGRN 253
           D ALY+AKK GRN
Sbjct: 409 DTALYLAKKQGRN 421


>gi|229513868|ref|ZP_04403330.1| GGDEF family protein [Vibrio cholerae TMA 21]
 gi|229349049|gb|EEO14006.1| GGDEF family protein [Vibrio cholerae TMA 21]
          Length = 495

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 21/170 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  ++  D L+G  N   F       IS     +  LS+   D+D+FKQ+NDN+GHP 
Sbjct: 334 KRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESNPLSLAVIDLDHFKQVNDNYGHPA 393

Query: 151 GD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GD    +V+A     +  V GT   + R GGEEF       ++QEA      +R  I   
Sbjct: 394 GDLVLQRVVALCQRHIAQV-GT---LCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMH 449

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               +S P   +T+S G+ +    E +  +  RADQA+Y AK  GRN+VV
Sbjct: 450 ----ASQP--QVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 493


>gi|152984917|ref|YP_001347333.1| hypothetical protein PSPA7_1952 [Pseudomonas aeruginosa PA7]
 gi|150960075|gb|ABR82100.1| hypothetical protein PSPA7_1952 [Pseudomonas aeruginosa PA7]
          Length = 306

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 83/158 (52%), Gaps = 8/158 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G  N  A   +LG   E        LS++  DID+FK++ND++GH VGD+ +  ++
Sbjct: 149 DALTGTGNRIAMDQALGRELELARRNLQPLSVLMLDIDHFKRVNDHYGHAVGDEALKAVA 208

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + +         V R GGEEF      +  Q A ++   LR+ +E       +G ++ ++
Sbjct: 209 ETIKDHLRNVDMVFRFGGEEFLVLLSSTPLQAACMVGERLRQAVEELDYR-HAGETLKLS 267

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IS G A+    E    ++ R D+ALY AK+ GRNR+ C
Sbjct: 268 ISLGCADLRPGEGSDDLLRRVDEALYEAKRDGRNRLRC 305


>gi|289548454|ref|YP_003473442.1| diguanylate cyclase [Thermocrinis albus DSM 14484]
 gi|289182071|gb|ADC89315.1| diguanylate cyclase [Thermocrinis albus DSM 14484]
          Length = 401

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 103/196 (52%), Gaps = 11/196 (5%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFIS-YNRISQLSRIDCLSGLLNHSAFISSLGS 124
           ++N S  ++ +    +L  +SG ++K+     Y+R         L   LN    +S +  
Sbjct: 216 MDNYSKTLLHLIQEEMLAVLSGFVIKDPLTGLYSR-------QYLEDYLNKE--MSRVKR 266

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           +   +S++F D+D FK +ND +GH VGD V+   +  L     +     R GG+EF    
Sbjct: 267 HKLVISLLFIDLDDFKWVNDTYGHMVGDVVLKSFASLLKENLRSGDIPVRYGGDEFVVIL 326

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +S + A ++A  +R+ +EN  +  +   SI +T+S G+     ++ +++ + RAD+A+
Sbjct: 327 PHTSAEGAMVVAERIRRAVEN-HVFEAHNVSIKLTVSIGVTPLKEEDDVTSFLERADRAM 385

Query: 245 YVAKKSGRNRVVCFSD 260
           Y AK+ G+NRVV  +D
Sbjct: 386 YCAKREGKNRVVLLND 401


>gi|316935123|ref|YP_004110105.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
 gi|315602837|gb|ADU45372.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
          Length = 741

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 87/171 (50%), Gaps = 20/171 (11%)

Query: 98  NRISQLSR---IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           +R   L+R    D L+GL N S F       ++         S++ FDIDYFK++ND +G
Sbjct: 562 DRTRDLARQAATDALTGLHNRSKFNMRLDEELARSQRTGRPFSLIIFDIDYFKEVNDVYG 621

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS- 206
           HP+GD+V+  LS  +         + R GGEEFA     +    AA  A  LR ++ ++ 
Sbjct: 622 HPMGDQVLIRLSQTVAASVRRADLLARWGGEEFAVLLADTDAAAAAETAKKLRLLVAHTI 681

Query: 207 --QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             Q+         IT S G+A+    +   T++ RAD ALY AK +GRNRV
Sbjct: 682 FEQVG-------SITASFGVAQFMPGDNAETLLARADNALYRAKLNGRNRV 725


>gi|256828941|ref|YP_003157669.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
 gi|256578117|gb|ACU89253.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
          Length = 495

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 101/198 (51%), Gaps = 17/198 (8%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQ----LSRIDCLSGLLNHSAFISSLGS------ 124
           SI + L++  +S ++L    I  NR S+     +  D L+G LN  AF+ S         
Sbjct: 296 SIVLVLVVAGLS-TLLVRGQIRLNRQSRELALAASTDMLTGALNRRAFMESASREFARVC 354

Query: 125 -YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            Y   LS +  D+D+FK +ND +GH  GD V++  +  +      P    R GGEEF   
Sbjct: 355 RYGGHLSCIMIDLDHFKNVNDTYGHAAGDLVLSSSAHYIASRLREPDMFCRYGGEEFVIL 414

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAE-RCHKEPISTIIYRAD 241
             G+    AA +A +LR  +  + +++  G   + +T S G+AE       + T++  AD
Sbjct: 415 LPGTDRNGAATVAEELRAGL--AGLDLQRGDEKLPLTASFGVAEIHAQCATLDTLLSLAD 472

Query: 242 QALYVAKKSGRNRVVCFS 259
           QALY AK++GRNR VC +
Sbjct: 473 QALYEAKENGRNR-VCLA 489


>gi|119478424|ref|ZP_01618409.1| hypothetical protein GP2143_06908 [marine gamma proteobacterium
           HTCC2143]
 gi|119448510|gb|EAW29757.1| hypothetical protein GP2143_06908 [marine gamma proteobacterium
           HTCC2143]
          Length = 375

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 8/172 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIND 144
           SIL++  +   R+ + +  D L+ LLN       +    + ++K+ ++  DID+FK++ND
Sbjct: 204 SILEDSSVQLLRLERAANTDPLTQLLNRRGLDVIVERWVADSDKMGVLLLDIDHFKKVND 263

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           ++GH +GD+ +  +S+ +         V R GGEE       S +      +  LRK + 
Sbjct: 264 DYGHDIGDQALRKISNIIRATSRDDDVVARWGGEELLVITRSSDKPALKEFSERLRKAV- 322

Query: 205 NSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255
            S INI+  P   +T+S G+ +   H+    + + RAD+ALY AK  GRN V
Sbjct: 323 -SDINIAGLPP--LTVSIGVTQHFSHEAFEQSTLVRADEALYTAKNEGRNLV 371


>gi|332534827|ref|ZP_08410651.1| hypothetical protein PH505_bt00140 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035739|gb|EGI72226.1| hypothetical protein PH505_bt00140 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 167

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 86/158 (54%), Gaps = 5/158 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSAFIS-SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           NR+++   ID L+ + N   F   +  + +    I+  DID+FK IND FGH VGD ++ 
Sbjct: 9   NRLARELIIDDLTKVHNRRYFYQHAKDAQHSPYVILIIDIDHFKAINDEFGHDVGDVILK 68

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            L+ +    F       RLGGEEF      ++  +A   +  L  +     INI +  S 
Sbjct: 69  ELATKYDNAFTHQNKFARLGGEEFGGYLPTNNMTQACDFSQQLIDLAHT--INIQN--SR 124

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           H+T+S G+A +   E +  ++ RADQALY+AKKSGR+R
Sbjct: 125 HLTVSIGVAMQTPNELLDKVMKRADQALYLAKKSGRDR 162


>gi|301631717|ref|XP_002944942.1| PREDICTED: hypothetical protein LOC100496669 [Xenopus (Silurana)
           tropicalis]
          Length = 738

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 8/173 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           +L    +R S L+R D L+G LN           I+    +   L +   D+D FK IND
Sbjct: 566 KLQDELDRASTLARHDPLTGTLNRKGLDELMEREIARARRHGTPLCVALLDVDNFKAIND 625

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD  +  L+D           + R GGEEF      +S+ +   +   L++ + 
Sbjct: 626 RVGHDTGDAALVHLADVARSAMRPQDMLARYGGEEFVVVLPETSQAQGIEIMTRLQREL- 684

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +++ + +   I IT S G+A+   +E  + I+ RADQ +Y+AK++G+NRVV 
Sbjct: 685 TTRLFLQNNEKILITFSVGVAQLGTQETSAEILRRADQGMYLAKRTGKNRVVA 737


>gi|242241092|ref|YP_002989273.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Dickeya
           dadantii Ech703]
 gi|242133149|gb|ACS87451.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Dickeya
           dadantii Ech703]
          Length = 678

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 127/247 (51%), Gaps = 22/247 (8%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTP---FYGLEY------ILVENLSLVIIS--ITISLL 81
           +F  +  A VI  A   + YIG +P   ++G         + V  +SL+I+   + IS+L
Sbjct: 170 LFARLAAALVIGAAIAAIQYIGFSPLAHYHGDSVNQRELSVWVSAISLLILGAMLVISML 229

Query: 82  LGYISGSILKE-LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVF 133
                 S L + L  + +++++L+  D L+GL N       L S       + +  ++++
Sbjct: 230 DAQWRASRLTDSLRQANDQLARLAMHDALTGLPNRMQLERELESCLHHARQHRQTFALMY 289

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK +ND +GH +GD+++A ++ +L    G  M + R+GG+EF        E++AA
Sbjct: 290 MDLDGFKIVNDAWGHYLGDQLLAGVTTRLREYLGPGMTLARIGGDEFVLLMRDCGEEQAA 349

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGR 252
            LA+ L + IE  Q    SG ++ +T+S GI+        S  +   AD A+Y  K++GR
Sbjct: 350 ALADKLVQAIE--QPFHQSGYTLRVTLSVGISLFPRDGATSHDLRLNADTAMYSIKQTGR 407

Query: 253 NRVVCFS 259
           N  + +S
Sbjct: 408 NGWIFYS 414


>gi|222110973|ref|YP_002553237.1| diguanylate cyclase [Acidovorax ebreus TPSY]
 gi|221730417|gb|ACM33237.1| diguanylate cyclase [Acidovorax ebreus TPSY]
          Length = 334

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 88/185 (47%), Gaps = 19/185 (10%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL------------GSYNEKLSIVFFDIDYFK 140
           ++ +Y  +   S  D L+GLLN   F                G    +  +   DID+FK
Sbjct: 141 VYQNYQSLLDYSERDALTGLLNRKTFEEQFSRQTGTPASPGEGEDTVRQWLAVIDIDHFK 200

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND FGH  GD+V+  ++++L   F +   + R GGEEF       +  +A      LR
Sbjct: 201 SVNDRFGHLYGDEVLILVANRLRTQFQSQDSIFRFGGEEFVVLLRSLTLAQARQALERLR 260

Query: 201 KIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++         P I HIT+S G A      P+  I+ RADQALY AK+ GRN+V  + 
Sbjct: 261 AAVQTHVF-----PQIGHITVSIGFAATQQGSPVE-ILGRADQALYYAKEHGRNQVCFYE 314

Query: 260 DIENN 264
           D+ N+
Sbjct: 315 DLVNS 319


>gi|118475090|ref|YP_891908.1| diguanylate cyclase [Campylobacter fetus subsp. fetus 82-40]
 gi|118414316|gb|ABK82736.1| diguanylate cyclase [Campylobacter fetus subsp. fetus 82-40]
          Length = 514

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 68/124 (54%), Gaps = 1/124 (0%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           SI FFDID+FK +NDN+GH  GD +++ +   L        FVGR GGEEF      +S+
Sbjct: 386 SICFFDIDHFKIVNDNYGHEAGDTILSTVGKILKKQSRDIDFVGRYGGEEFVVIMPETSK 445

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
             A + A ++   I N +  +  G  I ITIS G+A R   +     + RAD  LY AK 
Sbjct: 446 DNAILFAKNILSNISNFKF-LYRGEDIDITISCGVASRKDSKSDRDTLERADSHLYEAKN 504

Query: 250 SGRN 253
           SGRN
Sbjct: 505 SGRN 508


>gi|84392322|ref|ZP_00991749.1| sensory box/GGDEF family protein [Vibrio splendidus 12B01]
 gi|84376442|gb|EAP93322.1| sensory box/GGDEF family protein [Vibrio splendidus 12B01]
          Length = 422

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 16/161 (9%)

Query: 107 DCLSGLLNHSAFISS------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+G  N +  + +      L    + + I  FD+D+FKQIND  GH VGDKV+     
Sbjct: 268 DPLTGCRNRTEALDTFYDFEWLAQQGKTIHIALFDLDHFKQINDQHGHEVGDKVLIQFVA 327

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP---SIH 217
                 G    + R GGEEF    L    ++ AI  N+    I +  + +   P   ++ 
Sbjct: 328 TANESLGEQYLLYRWGGEEFLLVCL----EQTAIQCNE---SINDFYLAMDQSPWPNALK 380

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +T S G+ +    E I T I RAD+ALY AK +GRN+VV F
Sbjct: 381 VTTSTGVTQLKEHESIRTAIKRADKALYQAKDNGRNQVVTF 421


>gi|109900259|ref|YP_663514.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas atlantica T6c]
 gi|109702540|gb|ABG42460.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas atlantica T6c]
          Length = 965

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 13/178 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +  I  ++  D L+G     AF  SL           E+L+++  +ID FK IND  GH 
Sbjct: 524 HQSIEYMASHDTLTGFYQRQAFEKSLHEAILFAKQQQEELTLLHVNIDQFKAINDTHGHK 583

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  LS  +  +      +GRLGG+EF    +G++ Q + +LAN L   ++  +  
Sbjct: 584 AGDAVLRQLSQLMKKIVSDDGMIGRLGGDEFGILLVGNNAQNSFMLANKLLNAVQVHEFT 643

Query: 210 ISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFSDIENN 264
               P   +T+   I +    + IS+   ++  AD A Y+AKK GRNR+  +S  +  
Sbjct: 644 WEERP---LTLGVSIGQVPWNDTISSSEQLLSMADSACYMAKKHGRNRLHTYSSTDKQ 698


>gi|320159682|ref|YP_004172906.1| putative signaling protein [Anaerolinea thermophila UNI-1]
 gi|319993535|dbj|BAJ62306.1| putative signaling protein [Anaerolinea thermophila UNI-1]
          Length = 520

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 12/175 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           ++Q + +D L+G+ N    I    +  EK        ++V  D+D FKQIND FGH VGD
Sbjct: 346 LNQQATVDALTGVYNRRYLIELGETELEKARQMSLPFTVVLMDLDRFKQINDRFGHAVGD 405

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +  ++        +   VGR GG+EFA    G++E++A  +   L+  +E   +    
Sbjct: 406 HALQEVARCFKAGVRSSDIVGRYGGDEFALILFGATEEQARQVLERLQNCMERLGLQ-EQ 464

Query: 213 GPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           G  +HI+ S G      RC+  P+  ++ RAD ALY AK+ G   +  F+  E  
Sbjct: 465 GEPLHISASFGGVTCNGRCYA-PLDELLRRADHALYRAKEQGGKAIEWFAGEEEE 518


>gi|168184822|ref|ZP_02619486.1| GGDEF/HD domain protein [Clostridium botulinum Bf]
 gi|182672099|gb|EDT84060.1| GGDEF/HD domain protein [Clostridium botulinum Bf]
          Length = 567

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 9/172 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  L   D L+ + NH  F  +L          NE LS++F DIDYFK  ND +GH  G
Sbjct: 189 KLESLVNKDGLTDVYNHRFFHDALSKKVIECEEENEALSMIFIDIDYFKHYNDLYGHQKG 248

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-I 210
           D+V+  + + L         V R GGEEF+     +SE+EA  +A ++R  IE +     
Sbjct: 249 DQVLKTIGEILKNNTRKEDIVARYGGEEFSVLLPNTSEEEAINIAENIRGKIEYTYFEGE 308

Query: 211 SSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261
            + P+ ++T+S GI+   +K      +I  AD ALY AK   +NRV  ++ I
Sbjct: 309 ENQPNGNLTVSMGISVYPYKAKSDMELIKSADDALYRAKFFNKNRVEAYTSI 360


>gi|170698468|ref|ZP_02889540.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
 gi|170136639|gb|EDT04895.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
          Length = 510

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 89/186 (47%), Gaps = 12/186 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           L+   I+ +++ +L+  D L+GL N   F + L    ++       LS++F D+D+FK  
Sbjct: 326 LRRRQIAESKLYRLAHTDSLTGLDNRGTFDAVLAKEAQRASRSGRPLSVLFVDVDHFKAF 385

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD V+  ++             V R GGEEF      +  + AA +A  +R+
Sbjct: 386 NDYYGHLAGDDVLRRVAQSASRCLRRDSDHVARYGGEEFVVTLPDTDARGAATVAEAIRR 445

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSD 260
            I    I     P  H+T S G A        +  + R AD+ALY AK  GRNRV   SD
Sbjct: 446 AIAGLDIAHGRSPYGHVTTSIGTATATGGRVNAAALLRLADEALYRAKSGGRNRV---SD 502

Query: 261 IENNTC 266
            E +T 
Sbjct: 503 AEASTA 508


>gi|148546432|ref|YP_001266534.1| diguanylate cyclase [Pseudomonas putida F1]
 gi|148510490|gb|ABQ77350.1| diguanylate cyclase [Pseudomonas putida F1]
          Length = 357

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 93/188 (49%), Gaps = 16/188 (8%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
            L LG++   +  +L     R+S LS  D L+GL NH A+         +         I
Sbjct: 159 PLALGWVCYQLAIKLGDHKRRLSALSLTDSLTGLFNHGAWKDLLQLKFQACRQRQGHAVI 218

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              DID+FK IND FGH VGD V+  LS +L          GR GG+EF       SE +
Sbjct: 219 ALIDIDHFKTINDTFGHVVGDCVLRQLSAELRRSLREGDQAGRYGGDEFCVILPEISEAQ 278

Query: 192 AAILANDLRKII---ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247
           A  +   LR+ +    N+Q+     P + I++S G++    + E     + +AD+ALY+A
Sbjct: 279 ACQVMERLRERVSSYRNTQL-----PHLRISLSIGLSPFEANLESPEHWLEQADKALYIA 333

Query: 248 KKSGRNRV 255
           K +GR++V
Sbjct: 334 KHAGRDQV 341


>gi|115524045|ref|YP_780956.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
 gi|115517992|gb|ABJ05976.1| diguanylate cyclase with PAS/PAC sensor [Rhodopseudomonas palustris
           BisA53]
          Length = 641

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 5/169 (2%)

Query: 98  NRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +R+++++  D L+GL N      F+    S   +L+++  DID+FK  ND+ GH  GD+ 
Sbjct: 457 SRLAEMATTDSLTGLANRRTLDVFLRREFSSARQLAVLLLDIDHFKGFNDSLGHQAGDEC 516

Query: 155 IAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  ++  L     GTP    R GGEEFA    G  E  A  +A+ +R  +    I   + 
Sbjct: 517 LKKIAVVLAEATDGTPGLSARYGGEEFALVLPGVREDAALAIADAVRLQVRALDIANPAS 576

Query: 214 PSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDI 261
               +T+S GIA +       T ++  ADQALY AK+ GRN  VC S +
Sbjct: 577 DFGCVTVSIGIAIKSPATRNETALLGEADQALYAAKRQGRNCCVCGSTL 625


>gi|323183939|gb|EFZ69326.1| cellulose synthesis regulatory protein [Escherichia coli 1357]
          Length = 558

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 545 KQAGRNR-VCASD 556


>gi|153871720|ref|ZP_02000821.1| diguanylate cyclase/phosphodiesterase [Beggiatoa sp. PS]
 gi|152071815|gb|EDN69180.1| diguanylate cyclase/phosphodiesterase [Beggiatoa sp. PS]
          Length = 578

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 94/185 (50%), Gaps = 10/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFK 140
            I +EL  +   + +L  +D L+ + N   F          S  EK  ++++  D+D+FK
Sbjct: 380 QIEQELHKTNEELQRLVSLDSLTNIANRRRFDEHFDQEWKRSKREKKPITLIMCDVDFFK 439

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GH +GDK +  ++  +      P   V R GGEEFA     +  + A  +A  +
Sbjct: 440 LYNDTYGHQLGDKCLRVIAKAISKQIKRPSDLVARYGGEEFAVILPNTKPEGAVKVAEAI 499

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257
           R  +E+ +I   S P+  +T+S G++    + P S   ++  AD+ALY AKK GRNR V 
Sbjct: 500 RLELEHLKIAHLSSPNKIVTLSLGVSSLPTRPPFSQKILLTLADKALYEAKKRGRNRTVL 559

Query: 258 FSDIE 262
            ++ E
Sbjct: 560 KTEKE 564


>gi|319426296|gb|ADV54370.1| diguanylate cyclase [Shewanella putrefaciens 200]
          Length = 368

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 84/177 (47%), Gaps = 10/177 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
           G  ++ L      +S  +  D L+ L N  A+       I      + + S++  DID F
Sbjct: 188 GQEVQHLKSEMENLSLAAMTDQLTSLYNRRAYEIAIQDHIHRAQEQHSRCSLLIVDIDRF 247

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQ ND +GH +GDKV+A+++  L        FV R GGEEF      +   +A  +A  L
Sbjct: 248 KQFNDTYGHQIGDKVLAYVALALKQCVRGDDFVARYGGEEFVVLLPNTHFHDALQVAETL 307

Query: 200 RKIIENSQINISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           R+ I    + I     +    IT+S G+A     +   T+  RAD+ALY AK  GRN
Sbjct: 308 RERISERHLTIGKDKKLSLGAITVSIGLASLQEGDDAETLFSRADKALYEAKSDGRN 364


>gi|27380234|ref|NP_771763.1| response regulator PleD [Bradyrhizobium japonicum USDA 110]
 gi|27353388|dbj|BAC50388.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 457

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 79/159 (49%), Gaps = 9/159 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N     S L +  E+       L+++  DIDYFK INDN+GH  GD V+   +
Sbjct: 295 DTLTGLHNRRYMESHLATLAEQAATRGKPLALMILDIDYFKSINDNYGHDAGDDVLREFA 354

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHI 218
            ++           R GGEEF      +    A ++A  LR+ I      I  G   I +
Sbjct: 355 VRVRKSIRGIDLACRYGGEEFVIVMPETDLHVAGMVAERLRRSIAGEPFAIHKGTKRIEV 414

Query: 219 TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           TIS G+     K E ++ ++ RAD ALY AK  GRNRVV
Sbjct: 415 TISIGLTTLEQKGEAVTDVLKRADTALYRAKHDGRNRVV 453


>gi|313632317|gb|EFR99362.1| ggdef domain-containing protein [Listeria seeligeri FSL N1-067]
          Length = 175

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/178 (36%), Positives = 95/178 (53%), Gaps = 15/178 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNF 146
           K+LF  Y    Q S +D L+ L N   F   +    +K    ++++  DID+FK IND +
Sbjct: 3   KQLFQKY---EQDSTLDYLTQLSNVRQFDEKINHVVDKSGRQVALLLIDIDFFKNINDTY 59

Query: 147 GHPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           GH  GD   K +AF+  +     G+  F  R GGEEF+   L  S +E    A  +RK  
Sbjct: 60  GHDAGDAILKQLAFILKE-STTDGSEAF--RNGGEEFSLILLDCSVEEGNYFAEHIRKET 116

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSD 260
           E     I SG ++ ITIS G++   ++   S  +++ AD+ALY AK +GRNR VC +D
Sbjct: 117 EEHHFLIPSGQTVKITISIGVSGSHNEVTTSERLFKSADEALYKAKLTGRNR-VCIAD 173


>gi|285019719|ref|YP_003377430.1| signal transduction protein [Xanthomonas albilineans GPE PC73]
 gi|283474937|emb|CBA17436.1| hypothetical signal transduction protein [Xanthomonas albilineans]
          Length = 334

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 73/132 (55%), Gaps = 3/132 (2%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           +E ++++  DID FK IND  GH VGD  +  +++ +      P  + R+GGEEF     
Sbjct: 198 SEPVAVLMVDIDNFKAINDRHGHAVGDIALVTIANLMSQQIHRPDLLARVGGEEFMILVP 257

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQA 243
              E     LA  LR+ IE+  +   SG ++  T+S G  I+ +   E   T++  ADQA
Sbjct: 258 HGDEAAVHALAERLRRTIESQPVPEPSGDTLTCTVSIGYCISIQAQAE-WQTLVVAADQA 316

Query: 244 LYVAKKSGRNRV 255
           LY +K++GRNRV
Sbjct: 317 LYTSKRNGRNRV 328


>gi|289208828|ref|YP_003460894.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
 gi|288944459|gb|ADC72158.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
          Length = 491

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 85/187 (45%), Gaps = 18/187 (9%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNE 127
           SI I LL+ Y    +++E       + QLSR D L+G  N           ++ +   + 
Sbjct: 302 SILIFLLVLYRMSGLIRETQRQAQALEQLSRTDPLTGAANRRHLETVLEDELARVRRLDT 361

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            L++ F D+DYFKQ ND  GH  GD+++  L             + R GGEEF      +
Sbjct: 362 PLALAFIDLDYFKQYNDLHGHAQGDRLLRDLVTAWHQELRPSDTIARYGGEEFVVVLPHT 421

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
              +A  +   LR+   N Q           T SAGIA     E   +++ RADQALY A
Sbjct: 422 GPDQAGTVIERLRQRTPNQQ-----------TCSAGIACAEPMETAESLLRRADQALYRA 470

Query: 248 KKSGRNR 254
           K  GRN+
Sbjct: 471 KDEGRNQ 477


>gi|254492410|ref|ZP_05105582.1| GGDEF domain protein [Methylophaga thiooxidans DMS010]
 gi|224462302|gb|EEF78579.1| GGDEF domain protein [Methylophaga thiooxydans DMS010]
          Length = 336

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 14/163 (8%)

Query: 103 LSRIDCLSGLLNHSAFIS------SLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+ + N  AFI+           NE  + ++  DID FKQIND FGH VGD+V+
Sbjct: 172 LANTDELTDIWNRRAFIAESEKELQRAVRNEHPVCLLMLDIDDFKQINDQFGHEVGDEVL 231

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
                 ++ +  +    GR+GGEEFA     + + EA  LA  +R+ + N   + +    
Sbjct: 232 KLFCHGIMAIKRSYDIFGRIGGEEFAILLPETKQTEAVELAERIREKVANIFFH-TQQQK 290

Query: 216 IHITISAGIAERCHKEPISTI---IYRADQALYVAKKSGRNRV 255
           + IT+S G+   C   P+ T+   + +AD+ LY AK++G+N+V
Sbjct: 291 VGITVSIGV---CQLTPLDTVLSGLNKADKILYTAKRAGKNQV 330


>gi|149377372|ref|ZP_01895117.1| GGDEF domain-like protein [Marinobacter algicola DG893]
 gi|149358384|gb|EDM46861.1| GGDEF domain-like protein [Marinobacter algicola DG893]
          Length = 524

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 8/158 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+LN           I+    Y+ +L++++ D D+FK IND+ GH  GD V+   S
Sbjct: 356 DSLTGVLNRREMTRILEEEIARAKRYDRELALLWIDFDHFKAINDDHGHAAGDSVLKAAS 415

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L     +   VGR GGEEF         +EA   A  LR+++ ++   +  G ++ +T
Sbjct: 416 GLLAESVRSVDSVGRFGGEEFVILLPEMDRREALETAERLRRLVCDTPQPLGHGNTVTMT 475

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           IS G++    H E    +   AD+A+Y AK  GRN+VV
Sbjct: 476 ISIGVSVFPDHGEGADALCAAADRAMYQAKADGRNQVV 513


>gi|160874459|ref|YP_001553775.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160859981|gb|ABX48515.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|315266695|gb|ADT93548.1| diguanylate cyclase [Shewanella baltica OS678]
          Length = 581

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 92/184 (50%), Gaps = 17/184 (9%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDIDY 138
           G + K  F+      +++R+D L+G+LN  A        F+ +     +   ++ FD+D+
Sbjct: 387 GQMQKRKFM------RMARMDALTGILNRGAGQELGENLFVQATARGGD-FCVILFDLDF 439

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND+FGH  GD  +  + D L           R+GGEEFA     + E++   +A  
Sbjct: 440 FKRINDSFGHGTGDWALKKVVDSLKSHIRNGDVFARIGGEEFAILLPYADEEKGMEVAEQ 499

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            R  IE       SG    IT S G++     +  +  + +RAD ALY AK +GRN VV 
Sbjct: 500 CRARIEAIDTQ-HSGHKYVITASFGVSGLMADDLSLDPLFHRADMALYAAKANGRNAVVR 558

Query: 258 FSDI 261
           +SDI
Sbjct: 559 YSDI 562


>gi|116696263|ref|YP_841839.1| GGDEF domain-containing protein [Ralstonia eutropha H16]
 gi|113530762|emb|CAJ97109.1| GGDEF domain protein [Ralstonia eutropha H16]
          Length = 524

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 9/164 (5%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+G+ N   F       ++     ++ L ++  D+D FKQ ND  GH  GD  +  +
Sbjct: 360 IDALTGIRNRRYFQRESIAAVTRACERSQALGLLILDVDQFKQYNDLHGHVAGDDCLRQI 419

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIH 217
           +  L        F  RLGGEEFAA   G++ +E   +A  +  ++ +  I  +  P    
Sbjct: 420 AGALARTLSGEQFCARLGGEEFAAVLPGATREETRDVARRMVAVVRDLGIAHNGTPVQPV 479

Query: 218 ITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +TIS G      + P +  +++RAD A+Y AK++GRNR +   D
Sbjct: 480 VTISVGAVWTVPEAPRLEPLLHRADSAMYRAKRAGRNRFMLDGD 523


>gi|78355933|ref|YP_387382.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218338|gb|ABB37687.1| diguanylate cyclase (GGDEF domain) [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 542

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 89/174 (51%), Gaps = 15/174 (8%)

Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  LS  D L+GL N        +  I++    +   S +  DID+FKQ+ND +GH  GD
Sbjct: 362 LEHLSFCDTLTGLHNRRHLAHEGTRTITACTEADLPCSCLMLDIDFFKQVNDAWGHDAGD 421

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  +     +     R+GGEEFA  A  +    A  LA  +R+ IE++ +  + 
Sbjct: 422 MVLQSVARTISNAVRSKDMTIRMGGEEFAVIAPATDTASAFSLAERIRRNIESTPVQAAD 481

Query: 213 GPSIHITISAGIAERCHKEPI------STIIYRADQALYVAKKSGRNRVVCFSD 260
              I ITIS G+A+     PI        ++ +AD+ALY AKK GRNR   +S+
Sbjct: 482 D-EIRITISIGVAD-MGGAPIFGTTQLDDLLAKADRALYQAKKKGRNRTEIWSE 533


>gi|228998829|ref|ZP_04158415.1| Sensory box/GGDEF family protein [Bacillus mycoides Rock3-17]
 gi|229006344|ref|ZP_04164028.1| Sensory box/GGDEF family protein [Bacillus mycoides Rock1-4]
 gi|228754990|gb|EEM04351.1| Sensory box/GGDEF family protein [Bacillus mycoides Rock1-4]
 gi|228761004|gb|EEM09964.1| Sensory box/GGDEF family protein [Bacillus mycoides Rock3-17]
          Length = 431

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y    QL+ ID L+ + N   F         S    N+ ++++ FDID FK++ND +GH 
Sbjct: 262 YQEQEQLAAIDSLTEIYNRLKFQQLLEEKWKSEKRVNQTMALILFDIDDFKKVNDTYGHD 321

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +     +     R GGE+F    + ++E+EA  +A  LR  IE  Q +
Sbjct: 322 FGDLALIQLAELMKSKIASQHIFARWGGEKFIILVINTTEKEAFQVAESLRFFIETKQFS 381

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             S     +T S G+A          +I RAD ALY AKK+G+N+V  +
Sbjct: 382 SISK----LTASFGVALYEQGMTKEELIQRADIALYEAKKNGKNQVRLY 426


>gi|288549571|ref|ZP_05967457.2| putative GGDEF domain protein [Enterobacter cancerogenus ATCC
           35316]
 gi|288318420|gb|EFC57358.1| putative GGDEF domain protein [Enterobacter cancerogenus ATCC
           35316]
          Length = 471

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 100/196 (51%), Gaps = 10/196 (5%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYN 126
           I ++ I  +L Y   ++ +E  + Y +  Q S  D L+ L N S F  +L       S  
Sbjct: 277 IATLLIIFVLLYDVFNLYRESHLKYQQSYQNSIRDPLTRLYNRSYFYDALNHSLRSASRT 336

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           + +S+V  D+D FK+IND +GH  GDKV+ F++  L+          R+GGEEF      
Sbjct: 337 QPVSVVVSDLDRFKRINDCYGHLQGDKVLKFVARLLMDSVRPDDIAARIGGEEFVLMLAN 396

Query: 187 SSEQEAAILANDLRKIIENSQINISSG--PSIHITISAGIAERCHKEPIS-TIIYRADQA 243
           +    A  +A  +R+ + +   N S    P   ITIS G+      E  + T +  AD+A
Sbjct: 397 TPPDTARQVAERIREKLSSFDKNSSEEQLPE-PITISMGVFTATSAETTAETCVECADKA 455

Query: 244 LYVAKKSGRNRVVCFS 259
           +Y AK++GRNRVV +S
Sbjct: 456 MYEAKETGRNRVVVYS 471


>gi|289209499|ref|YP_003461565.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
 gi|288945130|gb|ADC72829.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
          Length = 307

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 15/166 (9%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N  AF       ++     +  LS++  D+D+FK+IND++GH VGD+++  ++
Sbjct: 140 DELTGLGNRRAFEIQGAKWLADCRRQDRPLSVLAIDLDHFKRINDDYGHAVGDELLRRVA 199

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--------SQINIS 211
           D L         + R+GGEEF A   G+    A   A  +R  I N            + 
Sbjct: 200 DTLRAATRQSDLLVRMGGEEFLAVLPGADLACAMECAERIRTAIANIRATATADDASALQ 259

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S   + +T S G+A       +  +  +AD+ALY AK+SGRNRV+ 
Sbjct: 260 SEGMVKVTASIGVASVGRSTTLQALYQKADEALYAAKQSGRNRVLA 305


>gi|78357722|ref|YP_389171.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78220127|gb|ABB39476.1| diguanylate cyclase (GGDEF domain) [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 252

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 94/197 (47%), Gaps = 21/197 (10%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125
           +++ ++ + +L G I G           R + L  ID L+ L N   F   LG       
Sbjct: 54  MLVGTVLVFMLFGLIIGR-------HERRFAGLCLIDPLTSLFNKRHFDLRLGQEVARHQ 106

Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
             +  + ++  D+D+FK++ND  GH  GD V+  ++  L     T   + R+GGEEFA  
Sbjct: 107 REDSPMCVIMLDLDHFKKVNDTLGHQAGDVVLMAVASTLRGCVRTEDVLARVGGEEFAVV 166

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PI--STIIY 238
              +     A LA  +R  +E   I +  G    I +S G+A  C +    P+    ++ 
Sbjct: 167 VPRTDMHGGAALAERIRAAVEEQIIPVGGGRETTIRVSLGVA--CMEAGSVPVLPHDLME 224

Query: 239 RADQALYVAKKSGRNRV 255
           +AD+ALY AK +GRNRV
Sbjct: 225 QADEALYRAKANGRNRV 241


>gi|117921386|ref|YP_870578.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117613718|gb|ABK49172.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 575

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 11/175 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           +   R  +++R+D L+G+LN  A        F+ +     +   ++ FD+D+FK+IND++
Sbjct: 385 LQKRRFMRMARMDALTGVLNRGAGQDLGENLFVQAAARGGD-YCVILFDLDHFKRINDSY 443

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD  +  + + L           R+GGEEFA     ++E +   +A   R+ +E  
Sbjct: 444 GHGTGDWALKKVVEVLKPHVRNGDVFARIGGEEFALFLPYANESKGMEVAEQCRRRLEAI 503

Query: 207 QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
             ++ SG    IT S G++    ++  +  +++RAD ALY AK +GRN V C+ D
Sbjct: 504 DTHL-SGHKFTITASFGVSGMTKEDLSLDPLLHRADMALYAAKSNGRNSVFCYED 557


>gi|317402392|gb|EFV82964.1| hypothetical protein HMPREF0005_00065 [Achromobacter xylosoxidans
           C54]
          Length = 531

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 85/167 (50%), Gaps = 11/167 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           + + S  D L+ LLN       ++ L +    L+IV  DID+FK IND +GH  GD+ + 
Sbjct: 357 LRRASTTDTLTSLLNRRGLNEAMALLQAAETPLAIVALDIDHFKNINDRYGHAAGDRALQ 416

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            L+  L         V R GGEEF     G+S   A   A  LR  +E  ++   +G   
Sbjct: 417 ILAALLTEGSRGGDTVARSGGEEFVMLMPGASLAAAVGAAERLRLKLE--RLGTDTGLPA 474

Query: 217 HITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            IT+SAG+A  C   H   +  ++ RAD+ALY AK  GRN  VC +D
Sbjct: 475 PITLSAGVA--CYPAHGATLDEVMQRADRALYYAKNHGRN-AVCVAD 518


>gi|188534112|ref|YP_001907909.1| Conserved hypothetical protein YneF [Erwinia tasmaniensis Et1/99]
 gi|188029154|emb|CAO97026.1| Conserved hypothetical protein YneF [Erwinia tasmaniensis Et1/99]
          Length = 464

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 132/264 (50%), Gaps = 24/264 (9%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIF----IANIFLFYIGLTPFYGLEYIL 65
           +IWL    +L    P   +++ +I + +FI  ++     I+ I L    +    G  Y+ 
Sbjct: 201 AIWLGGGGSL--LFPLPALLWCAISYPLFITCLLTMMTGISEIILVAGNVLSIQGKGYLF 258

Query: 66  -VENLS---LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
            +++LS   L + ++ IS L+  +S    K+L     RI++ +  D L+G L  S   + 
Sbjct: 259 RIDSLSSARLGVAAMLISPLIVSLSTISNKKL---VARITRRADYDFLTGALTRSGLSAK 315

Query: 122 L-----GSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           L     G         + +  DID FK IND +GH  GD V+A  ++ L         V 
Sbjct: 316 LDLLVTGRNRPPCFSGAALVIDIDRFKDINDTWGHAAGDYVLAKTAECLRAALPQSALVC 375

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKE 231
           R+GGEEF     G ++  + +LAN LR+ +E +++ + +G  + +T+S GI+     +  
Sbjct: 376 RMGGEEFLILIEGIAQPRSLLLANRLRRHVERNKV-LFNGNDLSVTVSIGISALNISNVN 434

Query: 232 PISTIIYRADQALYVAKKSGRNRV 255
            +   I RAD+ LY+AK SGRN+V
Sbjct: 435 SLDESIMRADEQLYIAKSSGRNQV 458


>gi|308188189|ref|YP_003932320.1| hypothetical protein Pvag_2712 [Pantoea vagans C9-1]
 gi|308058699|gb|ADO10871.1| Uncharacterized protein yneF [Pantoea vagans C9-1]
          Length = 473

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 101/194 (52%), Gaps = 14/194 (7%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----N 126
           L + +I IS L+   S   +++L     R++  +  D L+ LL+ S    SL +     +
Sbjct: 270 LGVATIAISPLIVAASMDAIRQL---NQRLALRANYDFLTRLLSRSGLYESLRAEPIFPD 326

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
            ++ ++  D+DYFK INDNFGH  GD V+  ++ ++  V G    + R GGEEF      
Sbjct: 327 RRVGVILLDVDYFKAINDNFGHDAGDSVLEEIARRMQRVVGKAGRICRFGGEEFVVVLFD 386

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP------ISTIIYRA 240
            + ++   LA  +R+ +   +  +  G +  +T+S G+A     E       I+ +I  A
Sbjct: 387 QNAEKLYFLAEAIRQKMAKEKFWL-QGSTATVTVSLGLAHGSADEATEWHRVINRLISAA 445

Query: 241 DQALYVAKKSGRNR 254
           D+ LY++K++GRN+
Sbjct: 446 DKNLYLSKRNGRNQ 459


>gi|167902129|ref|ZP_02489334.1| diguanylate cyclase [Burkholderia pseudomallei NCTC 13177]
          Length = 281

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 9/177 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           +L+EL  +  ++  L+  D L+G  N   FI  + S            S++  D+D FK 
Sbjct: 105 VLQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFKT 164

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           INDN+GH VGD V+     Q +V       + R+GGEEF           A+ +A  +R 
Sbjct: 165 INDNYGHQVGDVVLRNFVRQCLVAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRT 224

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
            I N+   I  G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV 
Sbjct: 225 TIANASFGI-DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 280


>gi|99080876|ref|YP_613030.1| diguanylate cyclase [Ruegeria sp. TM1040]
 gi|99037156|gb|ABF63768.1| diguanylate cyclase [Ruegeria sp. TM1040]
          Length = 313

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 78/152 (51%), Gaps = 5/152 (3%)

Query: 106 IDCLSGLLNHSAFISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           +D L+G  N         S +  K +++ FD+DYFK +ND +GHP GD V+  ++  +  
Sbjct: 166 LDPLTGCFNRRHLARVAQSQDLSKAALILFDLDYFKSVNDTYGHPTGDFVLRAVTSLVRQ 225

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
             G      R+GGEEF    L S E     LA   R  +++SQI  S      +T +   
Sbjct: 226 FLGPEDLFFRIGGEEFMVLRLRSEEGSTRALAEKCRAALDDSQILSSR----RVTATFSC 281

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           AE   +  I  ++ +AD AL  AK++GRNRVV
Sbjct: 282 AEFDGRTEIEPVLGQADVALLQAKRAGRNRVV 313


>gi|300309602|ref|YP_003773694.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1]
 gi|300072387|gb|ADJ61786.1| GGDEF domain containing protein [Herbaspirillum seropedicae SmR1]
          Length = 384

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 101/196 (51%), Gaps = 11/196 (5%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------S 121
            +SLV  S+ + L+   ++G+   E      RI QL+  D L+GLLN  A  +      +
Sbjct: 186 QISLVEGSMAVMLIALSMTGT---ERHRREERIGQLAARDPLTGLLNRRALQARAPALIA 242

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             S     +++  DID FKQ+ND  GH  GDK++  LS  L  V        RLGG+EFA
Sbjct: 243 QASQAHPGALLLIDIDNFKQVNDLHGHAAGDKLLEALSTLLREVLPDDALAARLGGDEFA 302

Query: 182 AAALGSSEQEAAILANDLRKI-IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                  + + A +   LR+  +  +Q  +++  ++ +++   +      + ++ ++ RA
Sbjct: 303 ILLPDGRQAQVAHIGEQLRQAFVHVTQTAVATPEAVSLSVGVSLFSTAALD-LAGLMARA 361

Query: 241 DQALYVAKKSGRNRVV 256
           D ALY AK++GRN++V
Sbjct: 362 DAALYEAKRAGRNQIV 377


>gi|115376221|ref|ZP_01463463.1| ggdef family protein [Stigmatella aurantiaca DW4/3-1]
 gi|310821744|ref|YP_003954102.1| FHA domain/GGDEF domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|115366794|gb|EAU65787.1| ggdef family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309394816|gb|ADO72275.1| FHA domain/GGDEF domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 292

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 102/199 (51%), Gaps = 16/199 (8%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------- 118
           + N  LV I  TI     +I+G  ++  +  ++ I +L+ +D L+ + N   F       
Sbjct: 99  LRNGDLVKIGRTI---FKFIAGGNIEAAY--HDEIYRLTTMDGLTQVHNRRYFDEQLDRE 153

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           +S    Y   LS+V FD+D+FK IND  GH  GD V+  L+  + V         R GGE
Sbjct: 154 VSRSRRYERVLSLVMFDVDHFKHINDKRGHLAGDYVLKHLASTVRVNIRREDVFARYGGE 213

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTI 236
           EF         +   + A  +R+++E ++  +    +I +TIS G+A  +  H+EP + +
Sbjct: 214 EFGILLPEVDAKGTWLFAEKVRQMVEQARF-VFDKHTIPVTISLGVATLQPEHREP-ADL 271

Query: 237 IYRADQALYVAKKSGRNRV 255
           +  AD+ LY AK +GRNRV
Sbjct: 272 VRAADEKLYEAKNTGRNRV 290


>gi|152964253|ref|YP_001360037.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216]
 gi|151358770|gb|ABS01773.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216]
          Length = 391

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 97/208 (46%), Gaps = 26/208 (12%)

Query: 67  ENLSLVIISITISLLLGYISGSILKE--------LFISYNRISQLSRIDCLSGLLNHSAF 118
           E  ++ ++++ + L+L  +   +L+         L ++ +R   L+  D L+GLLN    
Sbjct: 163 EERAMRVLAVQMVLVLSVVGLFVLRRRLDTAVALLTLARDRADDLAGHDPLTGLLNRRGL 222

Query: 119 ISSLGSYNE------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             +L +             V  D+D+FK +ND  GH  GD V+  ++  L         V
Sbjct: 223 RLALEAAAAGGRGLGPTGAVLLDVDHFKTVNDTLGHDAGDAVLIRIAAVLAATARPTDLV 282

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232
            R+GGEEF   A  +   + A L   LR  +      ++ G    +T+SAG+A  C  EP
Sbjct: 283 ARIGGEEFLVVATATEPGDVARLGERLRAAV------VADGGRPPVTVSAGVAS-CPPEP 335

Query: 233 -----ISTIIYRADQALYVAKKSGRNRV 255
                +  +  RAD+ LY AK +GRNRV
Sbjct: 336 GVPCLVDELQSRADRLLYRAKSTGRNRV 363


>gi|156973148|ref|YP_001444055.1| hypothetical protein VIBHAR_00827 [Vibrio harveyi ATCC BAA-1116]
 gi|156524742|gb|ABU69828.1| hypothetical protein VIBHAR_00827 [Vibrio harveyi ATCC BAA-1116]
          Length = 626

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDIDYFKQINDNFGHP 149
           ++  LS  D L+ L N   F   L  +   L          +  FDIDYFK+IND  GH 
Sbjct: 460 KLRNLSERDGLTNLWNRRKFEEQLSQHANMLERYPNTPTTCLALFDIDYFKRINDEMGHD 519

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+VI  +++ L+       FV R+GGEEFA     ++ +EA ++ N LR  +E     
Sbjct: 520 EGDRVICSVAETLLSGVRNTDFVARVGGEEFAVLMPHTTIEEAEVVLNRLRVAVE----- 574

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VC--FSDI 261
           +S   S  +T+S G ++       S   Y+ AD ALY +K +GRNRV +C  F DI
Sbjct: 575 LSGDGS--VTVSVGYSDLTSDRTRS---YKCADIALYESKSAGRNRVSICHSFDDI 625


>gi|49087236|gb|AAT51434.1| PA2771 [synthetic construct]
          Length = 342

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 103/203 (50%), Gaps = 15/203 (7%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKE----LFISYNRISQLSRIDCLSGLLNHSAF-- 118
           L E   L  +SI   L  GY+    L E    L    +R  + S +D L+ L N + F  
Sbjct: 141 LREGRQLNRLSI---LAEGYLQLRSLTEHTRFLRQEIDREQRKSLLDPLTQLWNRAGFHA 197

Query: 119 -----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                +    + ++++ I++ DID+FK+IND  GH  GD V+   + +L         + 
Sbjct: 198 LHQHELELARASDQRIGIIYSDIDHFKRINDTLGHRAGDSVLREAASRLRAALRPEDLLA 257

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEF A        E  ++AN +R+++E + I+  +G S+ +TISAG       E  
Sbjct: 258 RFGGEEFVAMVRVRETTELTMIANRIRELMEATPIDC-AGTSVPVTISAGCTLAGSGEEP 316

Query: 234 STIIYRADQALYVAKKSGRNRVV 256
              + RAD ALY AK++GRNRVV
Sbjct: 317 ERALARADAALYDAKRAGRNRVV 339


>gi|317051786|ref|YP_004112902.1| diguanylate cyclase [Desulfurispirillum indicum S5]
 gi|316946870|gb|ADU66346.1| diguanylate cyclase [Desulfurispirillum indicum S5]
          Length = 433

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 97/200 (48%), Gaps = 11/200 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           YI+  NL     +  ++  +  ++ + + EL +   R  +L+  D L+ +LN   F+  L
Sbjct: 235 YIVRANLISASANPDVAHQICVVTFANVTELEMEKQRFQELAMRDPLTDILNRKFFVQEL 294

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                    YN   S+V FDID FK +ND +GH VGD V+  +   +          GR 
Sbjct: 295 EREIARSVRYNHTFSLVMFDIDRFKPVNDTYGHQVGDYVLKEVVTLVSFHMRRTDVFGRY 354

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           GGEEF      +  + A  LA  +R+ I++   +       H+T S G+AE  ++     
Sbjct: 355 GGEEFIILLPETGLEGACALAEKIRETIDSHIFDFIE----HLTCSFGVAEFNNELTSFE 410

Query: 236 IIYRADQALYVAKKSGRNRV 255
           +I R D ALY AK +GRNR+
Sbjct: 411 LIKRTDDALYKAKNNGRNRI 430


>gi|152991401|ref|YP_001357123.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
 gi|151423262|dbj|BAF70766.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
          Length = 344

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 105/202 (51%), Gaps = 17/202 (8%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQ----LSRIDCLSGLLNHSAF-------IS 120
           + +SI  + L G+I    L E    Y +I++    LS  D L+ L N   F       I+
Sbjct: 145 IYLSIIAAALFGWIIEQKLFEFAQKYQQITENLYKLSTTDPLTQLYNRRFFFEECTKKIN 204

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                +  ++++  D+D+FKQIND +GH  GD+++   +  L         V R+GGEEF
Sbjct: 205 LAKRKSLPIALLSIDLDHFKQINDQYGHAQGDEILTSFAKILQKSLRGYDIVARMGGEEF 264

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKE-PISTIIY 238
           A   +  +      +AN   KI+EN +  I   PS ++++S GIA  + H+   +  ++ 
Sbjct: 265 AVCIIDENLNNVRFIAN---KILENVR-KIEVAPSNNLSVSIGIAFSKPHENINLQQLLI 320

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
           +AD+ALY AK+ GR+R+  + +
Sbjct: 321 QADKALYRAKERGRDRIEVYEE 342


>gi|152992452|ref|YP_001358173.1| signal transduction response regulator [Sulfurovum sp. NBC37-1]
 gi|151424313|dbj|BAF71816.1| signal transduction response regulator [Sulfurovum sp. NBC37-1]
          Length = 755

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 92/175 (52%), Gaps = 13/175 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQIND 144
           +++    N +  +S ID L+ L N       + S  +++      S++  DID FK IND
Sbjct: 584 RKMSTEKNALEAISMIDSLTELFNRRKIDRLIDSEVKRIRTKGCFSLILIDIDNFKNIND 643

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           ++GH VGD V+  ++  L          GR GGEEF      +S++EAA  A  +R  IE
Sbjct: 644 SYGHDVGDIVLKHIAQILKSSVRKKDSAGRWGGEEFLIVCPDTSKEEAAKFAERIRIAIE 703

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVC 257
           N     S    + +T S G+AE  ++E I  +++I R D+ALY +K+ G+NRV  
Sbjct: 704 NE----SFEKILKVTASVGVAE-YNRENIGDTSLIRRLDKALYDSKRDGKNRVTV 753


>gi|146293192|ref|YP_001183616.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
 gi|145564882|gb|ABP75817.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
          Length = 368

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 84/177 (47%), Gaps = 10/177 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
           G  ++ L      +S  +  D L+ L N  A+       I      + + S++  DID F
Sbjct: 188 GQEVQHLKSEMENLSLAAMTDQLTSLYNRRAYEIAIQDHIHRAQEQHSRCSLLIVDIDRF 247

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQ ND +GH +GDKV+A+++  L        FV R GGEEF      +   +A  +A  L
Sbjct: 248 KQFNDTYGHQIGDKVLAYVALALKQCVRGDDFVARYGGEEFVVLLPNTHFHDALQVAETL 307

Query: 200 RKIIENSQINISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           R+ I    + I     +    IT+S G+A     +   T+  RAD+ALY AK  GRN
Sbjct: 308 RERISERHLTIGKDKKLSLGAITVSIGLASLQEGDDAETLFSRADKALYEAKSDGRN 364


>gi|229181661|ref|ZP_04308986.1| GGDEF domain protein [Bacillus cereus 172560W]
 gi|228601857|gb|EEK59353.1| GGDEF domain protein [Bacillus cereus 172560W]
          Length = 196

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 96/198 (48%), Gaps = 9/198 (4%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121
           + L +IS  I+  + +IS + + +    + ++ Q + ID L+GL N   F       IS+
Sbjct: 1   MGLYLISSIITGYITFISANYVLQSNELFQKMKQYATIDALTGLGNVRQFDLEMNRHISN 60

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
               N+   ++  DID+FK +ND +GHP GD+V+  +   L      P    R GGEEFA
Sbjct: 61  KNMKNDSFCLLLIDIDHFKYVNDTYGHPAGDEVLKQVGCILRETSQFPDLAFRKGGEEFA 120

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                       +    +R  +E+    +     I IT+S G++E  ++      I  AD
Sbjct: 121 LLIPNKGLAYGILTGEQIRTAVESHSFQLLDETKIKITVSVGVSE--YEGSPEQFIQAAD 178

Query: 242 QALYVAKKSGRNRVVCFS 259
            ALY +K++GRN+V   S
Sbjct: 179 DALYYSKRNGRNKVSSVS 196


>gi|206602016|gb|EDZ38498.1| Diguanylate cyclase [Leptospirillum sp. Group II '5-way CG']
          Length = 371

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 92/177 (51%), Gaps = 12/177 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHP 149
            R+ + +  D L+G L   A +S L           +  L +  FDID FK+IND  GH 
Sbjct: 185 TRLKKEALFDNLTGALLRKAGLSELTRRMAQTDRRPDVPLFVALFDIDDFKRINDQDGHQ 244

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+A +++             RLGGEEF     G+S  +   LA +LR+ IE  +I 
Sbjct: 245 SGDRVLAAVAEATRRSIRKGDTFIRLGGEEFLLVFSGNSFDQVRSLAENLRQRIEK-EIQ 303

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           +S G    +T+S G+ +    E +S +++R+DQ +Y AK SG+N+ VC+ +  N   
Sbjct: 304 LSDGSG--VTVSIGLTQYKPGESLSELLHRSDQRMYDAKSSGKNQ-VCWQEPRNGPL 357


>gi|149377694|ref|ZP_01895430.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter algicola DG893]
 gi|149358047|gb|EDM46533.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter algicola DG893]
          Length = 364

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 79/160 (49%), Gaps = 8/160 (5%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GL N       L     +        SIV  D+D FK+IND++GH  GD V+ 
Sbjct: 193 ARTDELTGLSNRRDMQHRLNEEYSRYRRSGHHFSIVLIDLDLFKRINDDYGHDAGDHVLR 252

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             S  +  V        R GGEEF      +S  +A  LA  LR  + +++ +  +G S+
Sbjct: 253 AFSQLMETVIRQTDVAARWGGEEFLILLPDTSLLQALTLAERLRSEVASAEFSF-AGQSM 311

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +TISAGI        +  ++ +AD  LY AK+ GRNRV 
Sbjct: 312 PVTISAGICSIAKTSSVDELLKQADVHLYNAKQDGRNRVA 351


>gi|120598731|ref|YP_963305.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|120558824|gb|ABM24751.1| diguanylate cyclase [Shewanella sp. W3-18-1]
          Length = 368

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 84/177 (47%), Gaps = 10/177 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
           G  ++ L      +S  +  D L+ L N  A+       I      + + S++  DID F
Sbjct: 188 GQEVQHLKSEMENLSLAAMTDQLTSLYNRRAYEIAIQDHIHRAQEQHSRCSLLIVDIDRF 247

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQ ND +GH +GDKV+A+++  L        FV R GGEEF      +   +A  +A  L
Sbjct: 248 KQFNDTYGHQIGDKVLAYVALALKQCVRGDDFVARYGGEEFVVLLPNTHFHDALQVAETL 307

Query: 200 RKIIENSQINISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           R+ I    + I     +    IT+S G+A     +   T+  RAD+ALY AK  GRN
Sbjct: 308 RERISERHLTIGKDKKLSLGAITVSIGLASLQEGDDAETLFSRADKALYEAKSDGRN 364


>gi|89093907|ref|ZP_01166852.1| diguanylate cyclase (GGDEF domain) [Oceanospirillum sp. MED92]
 gi|89081793|gb|EAR61020.1| diguanylate cyclase (GGDEF domain) [Oceanospirillum sp. MED92]
          Length = 197

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/179 (36%), Positives = 95/179 (53%), Gaps = 22/179 (12%)

Query: 93  LFISYNRISQLSRI--DCLSGLLNHSAFISSL------GSYNEKLSIVF-FDIDYFKQIN 143
           L I+ +R+   +R   D L+G LN   F   L        ++ + + +F  DID+FK +N
Sbjct: 20  LRINSDRLEWRARASHDDLTGQLNRRYFFDELPVQIKQHQHDFRPAFLFMLDIDHFKTVN 79

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILAND 198
           DN+GHPVGD+++     ++           RLGGEEFA     A+AL + E  A  L N 
Sbjct: 80  DNYGHPVGDRLLELYGKEINGFLRKDDLGFRLGGEEFALVIHDASALTAVE-AAERLKNQ 138

Query: 199 LRKI-IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           L ++ + ++  NIS       T S GIAE    + + + + RADQALY AK  GRN+VV
Sbjct: 139 LGQLSVVDNHNNISR------TCSIGIAELQRADDVHSWLKRADQALYRAKDQGRNQVV 191


>gi|156933425|ref|YP_001437341.1| hypothetical protein ESA_01243 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531679|gb|ABU76505.1| hypothetical protein ESA_01243 [Cronobacter sakazakii ATCC BAA-894]
          Length = 556

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 15/161 (9%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N  AF            + +E  S++  D+D+FK IND +GH  GDKV+ + +
Sbjct: 395 DTLTRLYNRGAFFERARMAAKTCFAQSEPFSVIQLDLDHFKSINDRYGHQAGDKVLTWAA 454

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L          GR+GGEEF     G++   A  +A  +R+ I + +I +    +I I+
Sbjct: 455 GMLSRSLRAQDVAGRVGGEEFCVILPGTTADGARQVAERIRQRINSQEILVRPDTTIRIS 514

Query: 220 ISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNRV 255
           +S G++E         E + +I   AD  LY+AK+ GRN+V
Sbjct: 515 VSVGVSEARRDGDYDFEHLQSI---ADHRLYLAKQRGRNQV 552


>gi|77361535|ref|YP_341110.1| two-component response regulator [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876446|emb|CAI87668.1| putative two-component response regulator [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 299

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 87/172 (50%), Gaps = 17/172 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+ ID L+ + N      +L          N  LS++  DID+FK+ ND +GH  GD
Sbjct: 130 LEMLASIDGLTEIPNRRNLDENLSREWRKSKRNNTPLSVLLMDIDHFKRYNDTYGHRAGD 189

Query: 153 KVIAFLSDQLVVV--FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
             +  ++  L      G+  F+ R GGEEFAA   G  + EA   AN LR  +  + +NI
Sbjct: 190 DCLKAVAQALAAQCERGSD-FIARYGGEEFAAVLPGVDKAEATGFANKLRNAV--NALNI 246

Query: 211 SSGPSI---HITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   S+   H+TIS G+A  E    E    ++  AD  LY AK+ GRN+VV 
Sbjct: 247 AHKASLNAEHVTISIGVASTENASIETEQALLEEADLGLYAAKEGGRNQVVA 298


>gi|85710375|ref|ZP_01041440.1| hypothetical protein NAP1_15858 [Erythrobacter sp. NAP1]
 gi|85689085|gb|EAQ29089.1| hypothetical protein NAP1_15858 [Erythrobacter sp. NAP1]
          Length = 509

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 8/169 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           + + +LS  D LS L N  A    L S+   +E+++I   D+D FKQ+ND+FGH +GD++
Sbjct: 57  HELEELSETDTLSKLPNRRALHGDLESFSKGDEEVAIALIDLDRFKQVNDHFGHAIGDRL 116

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           I   +  L  + G      RLGG+EFA A  G       IL    R ++E  Q  +  G 
Sbjct: 117 IQECAAMLQNICGDEARCYRLGGDEFAVAMAGRV--SGTILEGMCRSLLEQLQAPVPVGK 174

Query: 215 -SIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             I +  S G++      + P S ++ R+D A+ V+K+ G+ R   F++
Sbjct: 175 YDISVGASIGLSRSTADRRLPSSEMLRRSDVAMSVSKRDGKMRCTWFNE 223


>gi|241767182|ref|ZP_04764937.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
 gi|241362200|gb|EER58262.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
          Length = 273

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 98/210 (46%), Gaps = 31/210 (14%)

Query: 66  VENLSLVIISITISLLLGYIS-----GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           V  LS+V+  +T  LL    +         +EL  +   +   +R D L+GLLN   F +
Sbjct: 71  VHRLSVVLNGMTRRLLAANEAMEEKVRQRTQELEAANRELDTQARSDPLTGLLNRRGFGA 130

Query: 121 SLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L             L++V  D+D+FK IND  GH VGD+V+  L+  L         V 
Sbjct: 131 QLDFALALARRGRRPLAMVALDVDHFKHINDTHGHDVGDQVLQRLASTLRERLRDSDVVA 190

Query: 174 RLGGEEFAA----AALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERC 228
           RLGGEEF A      L  +E  A       R +++   I     P +   T+SAG++   
Sbjct: 191 RLGGEEFVALLPDTDLAGAEATA-------RTLVQT--IAAQEDPVVGRFTVSAGVS--A 239

Query: 229 HKEPIS---TIIYRADQALYVAKKSGRNRV 255
            + P+     ++ R+DQALY AK  GRNRV
Sbjct: 240 LRNPLDNGPALLRRSDQALYEAKGQGRNRV 269


>gi|229916953|ref|YP_002885599.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
 gi|229468382|gb|ACQ70154.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
          Length = 358

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 101/213 (47%), Gaps = 12/213 (5%)

Query: 54  GLTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112
           GLT +     +LV  +S  I I ITI  +  Y+    +KE  IS       +  D L+GL
Sbjct: 151 GLTEYAAYVALLVTLISFPIGILITIMNIDLYLINHRVKEYKIS-------AETDHLTGL 203

Query: 113 LNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            N  A+   +    E+    +++  DID+FKQIND +GH  GD+++   S+ L       
Sbjct: 204 ENRRAWEMQMKKIKERYDTCNVLILDIDHFKQINDRYGHANGDEILKQFSELLHRETRDH 263

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               R+GGEEF       S+ E   +A  +R  I      +     IHI++S GIA    
Sbjct: 264 DIKARIGGEEFGILIPMLSQSEVIGVAERIRSSISKHAFKLLDQQVIHISVSIGIAN-GK 322

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            E +  +++ AD  LY AK SGRNR      +E
Sbjct: 323 SEQLHEMVHLADDCLYQAKNSGRNRTHIHGGVE 355


>gi|167035253|ref|YP_001670484.1| diguanylate cyclase [Pseudomonas putida GB-1]
 gi|166861741|gb|ABZ00149.1| diguanylate cyclase [Pseudomonas putida GB-1]
          Length = 360

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 91/188 (48%), Gaps = 16/188 (8%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
            L LG++   +  +L     R+S LS  D L+GLLNH A+         +         I
Sbjct: 162 PLALGWVCYQLAIKLGDHKRRLSALSLTDSLTGLLNHGAWKDLLLLKFQACKQQQGHAVI 221

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              DID+FK IND FGH VGD V+  LS +L          GR GG+EF      +SE +
Sbjct: 222 ALIDIDHFKTINDTFGHVVGDCVLRQLSVELRRNLREGDQAGRYGGDEFCVILPDTSEAQ 281

Query: 192 AAILANDLRKII---ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247
           A      LR+ +    N Q+     P + I++S G++      E     + +AD+ALY A
Sbjct: 282 ACHAMERLREQVSSYRNPQL-----PHLRISLSIGLSPFEAGLESPEHWLEQADKALYTA 336

Query: 248 KKSGRNRV 255
           K +GR++V
Sbjct: 337 KHAGRDQV 344


>gi|20808701|ref|NP_623872.1| diguanylate cyclase/phosphodiesterase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517340|gb|AAM25476.1| Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF)
           [Thermoanaerobacter tengcongensis MB4]
          Length = 553

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 91/173 (52%), Gaps = 10/173 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148
            Y  +++ S  D L+   N   F  +L          NE +S++ FD+D FKQIND +GH
Sbjct: 381 KYYEVTRKSITDPLTKTYNRRYFNDALMENIMRADENNEPVSLIMFDLDNFKQINDTYGH 440

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+V+  ++ ++     +   V R GGEEFA      + ++A ++A  +R  + +  I
Sbjct: 441 LIGDEVLKEVARRIKNNVRSNDIVARFGGEEFAVILPKLTAEQAYMIAERIRTEVSSKPI 500

Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS-GRNRVVCFS 259
               G  I++TI+ G+A+   K +    ++  AD+ALY   KS GRN++  + 
Sbjct: 501 KTEKG-DIYVTITGGVADYPSKADSAEKLVSHADRALYAGGKSKGRNKIAIYE 552


>gi|296389756|ref|ZP_06879231.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
          Length = 401

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 96/197 (48%), Gaps = 16/197 (8%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ISSLG 123
            LV++  + +L   Y+     +E F+    +  ++  D L+GL+N   +          G
Sbjct: 199 GLVVLICSFAL---YLQDYAQREQFLGRRLLGMMAEQDSLTGLVNRRYYELLAQRALEQG 255

Query: 124 SYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFA 181
           +  EK ++++  D+D FK  ND++GHP GD  +  L   L      P+    RLGGEEFA
Sbjct: 256 AREEKGVALILVDVDDFKAYNDHYGHPAGDAALRQLGVVLRQGARRPLDIAARLGGEEFA 315

Query: 182 AAALGSSEQEAAILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEPISTIIY 238
                S E     +A  LR+ +E      +  S+GP  ++TIS G+A       +  +  
Sbjct: 316 VLLYDSEEGNTLAIAERLRQAVEALGIEHLGSSAGP--YLTISLGVAYSTSGMGLDALYR 373

Query: 239 RADQALYVAKKSGRNRV 255
            AD+ALY AK +GRN V
Sbjct: 374 EADRALYEAKDAGRNAV 390


>gi|209809804|ref|YP_002265343.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238]
 gi|208011367|emb|CAQ81825.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238]
          Length = 525

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 96/192 (50%), Gaps = 9/192 (4%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128
           I  SL + YI   +  +  I +N I +L+  D L+GL+N   F       +     +  K
Sbjct: 334 ILFSLCMSYIIAQLQLKKRIDHNEIRKLAHHDSLTGLINRGYFKKLFHWKMQHARRFESK 393

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L++++ D+D FK +ND+FGH VGD  +  +S  L   F    +V R+GG+EFA      +
Sbjct: 394 LALIYIDLDGFKDLNDSFGHSVGDLALKAISKNLEYAFSINAYVSRIGGDEFAVLIYDVN 453

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVA 247
           + +  I   +    + +  + +     + +  S G+A    H   I+ +++ AD+A+Y  
Sbjct: 454 DTQEVIAQVEAYLYLSHQPLTLDDKQYM-LNTSIGVAFFPEHGTNINALMHNADEAMYYI 512

Query: 248 KKSGRNRVVCFS 259
           K+SG+N    FS
Sbjct: 513 KRSGKNGFQIFS 524


>gi|197336122|ref|YP_002156327.1| ggdef family protein [Vibrio fischeri MJ11]
 gi|197317612|gb|ACH67059.1| ggdef family protein [Vibrio fischeri MJ11]
          Length = 505

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 97/191 (50%), Gaps = 12/191 (6%)

Query: 76  ITISLLLGYISGSILKE-------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125
           +TIS+L+  ++  + ++       L I    +  ++  D L+GLLN  A    +  Y   
Sbjct: 314 LTISMLIAALTSVVTRDKQRIENLLEIRTKELRYMAMHDDLTGLLNRRAIRDVISRYIET 373

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            +  +++ FDID FKQIND +GHP GD V+  +   +    G   +V RLGG+EF+    
Sbjct: 374 KKSFALLCFDIDKFKQINDTYGHPEGDAVLRHIGHLMSETLGNNAYVSRLGGDEFSIVMK 433

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            +S  E  +++  +  ++  S   + +   I  TIS G A     E +  ++  ADQALY
Sbjct: 434 LNSIDELTLISEQIHDLVATSP-TVLNDFDIAQTISLG-AVLWKGESLEGLLKAADQALY 491

Query: 246 VAKKSGRNRVV 256
            +K  GRN+V 
Sbjct: 492 QSKAMGRNQVT 502


>gi|217976674|ref|YP_002360821.1| diguanylate cyclase [Methylocella silvestris BL2]
 gi|217502050|gb|ACK49459.1| diguanylate cyclase [Methylocella silvestris BL2]
          Length = 738

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 76/155 (49%), Gaps = 11/155 (7%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F  +L +       YN  LS+V FDID+FK IND  GH VGD V+  LS
Sbjct: 568 DPLTGLFNRMKFDQALAAEILRANRYNRPLSLVLFDIDHFKNINDLHGHQVGDNVLVQLS 627

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
                       + R GGEEF      S+ Q A   A +LR  I  +    +      +T
Sbjct: 628 RIAAAHIRGTDVLARWGGEEFVILVPESNGQMAYQTAENLRNAIGQAVFEKAGA----VT 683

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            S G+AE    +   ++I RAD A+Y AK  GRN+
Sbjct: 684 CSFGVAEYVDGDAAESLISRADAAMYRAKIKGRNQ 718


>gi|127514309|ref|YP_001095506.1| diguanylate cyclase [Shewanella loihica PV-4]
 gi|126639604|gb|ABO25247.1| diguanylate cyclase [Shewanella loihica PV-4]
          Length = 622

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 94/181 (51%), Gaps = 13/181 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           L+EL  +  ++++ + +D L+G+ N +AF   L +           L+I+  DID FK I
Sbjct: 439 LRELNEANQKLTEQNTVDSLTGVKNRAAFEKRLQAEGRLSRRQQTPLAILMIDIDRFKAI 498

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD+ +  ++  L      P   V R GGEEFA     +S   A  +A  +R 
Sbjct: 499 NDTYGHLAGDQALKTIAQALKEKLRRPSDLVSRFGGEEFAMILPNTSCDGALQVAELMRS 558

Query: 202 IIENSQINISSG-PSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +  S++ ++ G  +I +TIS GI        +    ++ +AD+ALY AK  GRNRV  +
Sbjct: 559 TV--SELPLAWGEQAIPLTISIGICAEVIVDDQHTQLLVDQADKALYRAKHEGRNRVCVY 616

Query: 259 S 259
           S
Sbjct: 617 S 617


>gi|315644133|ref|ZP_07897303.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus vortex V453]
 gi|315280508|gb|EFU43797.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus vortex V453]
          Length = 331

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS----YNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
           +LS  D L+GL N   F   L      YN+     S+   DIDYFK++ND +GH VGD+V
Sbjct: 163 ELSNTDKLTGLKNRRFFQEQLEEQLRLYNQSGRPFSLFLIDIDYFKRVNDTWGHAVGDEV 222

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  L         V R GGEEF     G    EA  +A   R+ + ++     S  
Sbjct: 223 LVDVAGILKSCAREGDVVARYGGEEFVMILPGLDVAEAREIAEQFRRAVNDAIWTTGS-- 280

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              ITIS G+     ++  + ++ +ADQALY +K++GRN+V    D++
Sbjct: 281 ---ITISIGMITATPEDHEAALLQKADQALYASKQNGRNQVTHHVDLK 325


>gi|239832267|ref|ZP_04680596.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239824534|gb|EEQ96102.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 263

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 79/156 (50%), Gaps = 8/156 (5%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N   F  +L  Y       +  + ++  D+D+FK +ND +GH VGD V+   +
Sbjct: 107 DSLTGMQNRRYFDEALKEYLVQFDRIHRPVGLMIIDLDHFKTVNDTYGHDVGDIVLQEAA 166

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V RLGGEEFA  A     +    LAN +RK I   +I++     + +T
Sbjct: 167 RCLRDYTRYHDVVARLGGEEFAVLAPNMDAELMIKLANRIRKAISALEIDLGD-EKLGVT 225

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S G+A    +E    +  RAD+ LY AK  GRNRV
Sbjct: 226 VSIGLAIWDRRETSKDLYRRADKMLYAAKNMGRNRV 261


>gi|237799012|ref|ZP_04587473.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021866|gb|EGI01923.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 308

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+   N  A   SL         + + LS++  DID+FK++ND +GH  GD V+  ++
Sbjct: 150 DSLTDTGNRIAMDQSLAREIEVSRRHKQPLSLLMLDIDHFKKVNDEYGHHTGDDVLKTVA 209

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A ++   LR+ + + +      P++++T
Sbjct: 210 HSLKTQLRNIDRVFRYGGEEFVVILSNTDSDSAELIGERLRQAVRDLEFQ-ELDPTLNMT 268

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +S G +     E   +++ RAD ALYVAK+ GRNR+   S
Sbjct: 269 VSLGCSTLLSTETADSLLRRADNALYVAKRQGRNRLAMAS 308


>gi|254492493|ref|ZP_05105665.1| GGDEF domain protein [Methylophaga thiooxidans DMS010]
 gi|224462385|gb|EEF78662.1| GGDEF domain protein [Methylophaga thiooxydans DMS010]
          Length = 713

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 82/161 (50%), Gaps = 8/161 (4%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F  +L             LS++  DID+FK+ ND +GH  GD  +  ++
Sbjct: 544 DSLTGLRNRRFFDDALSRDIQLAEREQTALSLLICDIDHFKRFNDEYGHEAGDVALQSVA 603

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +L   F       RLGGEEF      +S  +A + A  L + I  + I+  +     +T
Sbjct: 604 AKLKQQFRQSDIPCRLGGEEFVVLMREASLDDARVKAEKLLEAIAENHIDYDNEKLGPLT 663

Query: 220 ISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
           +SAG+A     EP    ++ +AD+ALY AK++GRN VV F 
Sbjct: 664 VSAGVASWRGDEPDAEALLRKADKALYKAKQTGRNCVVVFE 704


>gi|218548932|ref|YP_002382723.1| diguanylate cyclase YddV [Escherichia fergusonii ATCC 35469]
 gi|218356473|emb|CAQ89096.1| putative diguanylate cyclase YddV [Escherichia fergusonii ATCC
           35469]
          Length = 463

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 94/181 (51%), Gaps = 13/181 (7%)

Query: 88  SILKELF--ISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE---KLSIVFFDIDY 138
           ++L+ELF  +S + +     +D L+ LLN     + F   +   N     LS +  D+D 
Sbjct: 284 TLLRELFEEVSKHEVG----MDVLTKLLNRRFLPTIFKREIAHANRVSTPLSTLIIDVDK 339

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE +   +A  
Sbjct: 340 FKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFVIVLTEASENDTLRIAER 399

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 400 IRSRVEKTKLKAANGDDIPLSLSIGAAMFNGHPDYERLIQMADEALYIAKRRGRNRVELW 459

Query: 259 S 259
            
Sbjct: 460 K 460


>gi|242280956|ref|YP_002993085.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
 gi|242123850|gb|ACS81546.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
          Length = 333

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 72/134 (53%), Gaps = 10/134 (7%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIA----FLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           LS++  D+D FK +ND +GH  GD V+      L +        P    R GGEEF    
Sbjct: 202 LSVIMIDVDNFKNVNDTYGHATGDAVLRSVGHILHENSRQGVDIPC---RYGGEEFVILM 258

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQ 242
            GS ++EA I+A  +R   E++ I+   G  I IT S GIA  E C +     ++  AD+
Sbjct: 259 PGSEKREAEIVAERIRAACEDATISAPEG-KIKITASCGIASVEECQEPSADALLNIADK 317

Query: 243 ALYVAKKSGRNRVV 256
            LY AK+SGRNRVV
Sbjct: 318 RLYCAKESGRNRVV 331


>gi|167840639|ref|ZP_02467323.1| two component system fusin protein [Burkholderia thailandensis
           MSMB43]
          Length = 487

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 84/169 (49%), Gaps = 14/169 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +L+R D L+GL N  AF  +L             LS++F DID FK  ND +GH  G
Sbjct: 315 RLQRLARTDALTGLGNRRAFDENLRREWARALRTGRPLSLLFVDIDQFKDYNDGYGHQAG 374

Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D V+  +   L + V      V R GGEEF      +  + A  +A  +R+ + +  I  
Sbjct: 375 DGVLREVGRCLALNVRRAVDDVSRYGGEEFVITLPDTDAKSATAIAEHIRRAVYDLDIQH 434

Query: 211 SSGPSIHITISAGIAER----CHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  P   +T+S G+        H +  +T++  AD ALY AK +GRNRV
Sbjct: 435 AKSPYARVTVSIGLVTSHEHVAHSD--TTLVKMADAALYQAKSTGRNRV 481


>gi|27382262|ref|NP_773791.1| hypothetical protein bll7151 [Bradyrhizobium japonicum USDA 110]
 gi|27355433|dbj|BAC52416.1| bll7151 [Bradyrhizobium japonicum USDA 110]
          Length = 776

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 21/176 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAF------ISSLGSYNEKLS-IVFFDIDYFKQINDNFGHPVG 151
           RIS L+R D L+ L N  +F      + ++  + E+LS ++F D+D FKQ+ND  GHP G
Sbjct: 332 RISHLARYDDLTALPNRVSFRDEIERLLAISHHAERLSALLFVDLDQFKQVNDTLGHPCG 391

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL------RKIIE 204
           D+++  ++++L  +     FV R GG+EF       SS ++AA LA  +      R  I+
Sbjct: 392 DQLLCAVANRLREMLRPEDFVARFGGDEFVVFQQDISSPEDAASLARRIVERLSERYRID 451

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           N  + I +   I +T   GI+         T++  AD ALY AK  GR     F D
Sbjct: 452 NHLVEIGASVGIALTSPDGIS-------ADTLLKNADMALYRAKADGRGTFCFFRD 500


>gi|255747077|ref|ZP_05421022.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262161378|ref|ZP_06030488.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|262167752|ref|ZP_06035454.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|255735479|gb|EET90879.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262023817|gb|EEY42516.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|262028689|gb|EEY47343.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
          Length = 473

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 21/170 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  ++  D L+G  N   F       IS     +  LS+   D+D+FKQ+NDN+GHP 
Sbjct: 312 KRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPA 371

Query: 151 GD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GD    +V+A     +  V GT   + R GGEEF       ++QEA      +R  I   
Sbjct: 372 GDLVLQRVVALCQRHIAQV-GT---LCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMH 427

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               +S P   +T+S G+ +    E +  +  RADQA+Y AK  GRN+VV
Sbjct: 428 ----ASQP--QVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 471


>gi|119489536|ref|ZP_01622297.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106]
 gi|119454615|gb|EAW35762.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106]
          Length = 738

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 90/180 (50%), Gaps = 15/180 (8%)

Query: 93  LFISYNR-ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           L  +YNR + ++S  D L+G  N       L         Y +  S++  DIDYFK+IND
Sbjct: 561 LLQTYNRKLEKISVTDPLTGCFNRLKIEECLQKQESLFNRYQQTFSVILCDIDYFKKIND 620

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD V+  +   L         +GR GGEEF   A  +    A  LA  L + + 
Sbjct: 621 TFGHLAGDAVLMEMVTLLNQRLRDTDILGRWGGEEFMIVAPNTDLSGATTLAEALCQQLA 680

Query: 205 NSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           + +  I+ G   H T S G+AE  H+    IS +I + D+ALY AKK GRN VV + + +
Sbjct: 681 DHEF-ITVG---HQTASFGVAE-FHRGSHSISHLISQVDEALYKAKKKGRNCVVAYQETQ 735


>gi|114707398|ref|ZP_01440295.1| putative transcription regulator (with tandem n-terminal response
           regulator domains) protein [Fulvimarina pelagi HTCC2506]
 gi|114537279|gb|EAU40406.1| putative transcription regulator (with tandem n-terminal response
           regulator domains) protein [Fulvimarina pelagi HTCC2506]
          Length = 454

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 10/173 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L ++  R  +L+ ID L+GL N        S  ++         S++  DID+FK+IND 
Sbjct: 280 LRMTLERTLELAVIDGLTGLHNRRFLNTHMSRAVTEAERRQGTFSLIVADIDHFKRINDT 339

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD V+   + +L           R+GGEEFA     + E+ A + A   R  IE 
Sbjct: 340 YGHDGGDIVLREFARRLEASVRASDLPCRIGGEEFAVLLPNADERTARVTAERFRAAIEA 399

Query: 206 SQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               IS    + +T+S G+A   R  +E +ST++  AD ALY AK +GRN++ 
Sbjct: 400 RPFIISDALELPVTVSVGLAIFPRGGQE-VSTLMRAADAALYRAKSAGRNQIA 451


>gi|219667798|ref|YP_002458233.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2]
 gi|219538058|gb|ACL19797.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2]
          Length = 389

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 81/156 (51%), Gaps = 11/156 (7%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ +LN   FI    +         E+++ +  DID FK+IND +GH VGD V+   +
Sbjct: 228 DGLTNILNRKTFIERSNAVISLYLREQEQIAFLLIDIDDFKKINDKYGHFVGDAVLQDFA 287

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           D L          GR GGEEFA    G+ E++   +A  LR  I NS ++  +G  I+ T
Sbjct: 288 DTLRKQLRDYDLFGRYGGEEFAILLPGTDEKQVKEVAERLRGTIANSSVD--TGLKINYT 345

Query: 220 ISAGIAE-RCHKEPISTIIYR-ADQALYVAKKSGRN 253
           IS G       +E    ++Y+  DQALY+AK  G+N
Sbjct: 346 ISVGYCSITPDQETTIDMLYKLCDQALYMAKAHGKN 381


>gi|291615079|ref|YP_003525236.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1]
 gi|291585191|gb|ADE12849.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1]
          Length = 355

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 113/252 (44%), Gaps = 11/252 (4%)

Query: 20  ESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS 79
           ES     +M+ F I F+  +AT   +  I +  +GLT    L    +  +S  +  I   
Sbjct: 90  ESLHQEVWMMIFPIAFAPIVATRERLIWIVIGAVGLTSVMMLRPEPLTTISTFVFVIAY- 148

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132
           L LG+I+  +++    +  R++ LS ID L+   N           I+      + L+ +
Sbjct: 149 LTLGFITMMLVRHNEQNIERLAHLSIIDPLTRAYNRGYLKDVMVSEINRCRRSGQALTAI 208

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQE 191
             DIDYFK  ND +GH  GD V+  ++D L         +V R GGEEF     G +  E
Sbjct: 209 MLDIDYFKMFNDAYGHLYGDSVLEQVADALKRSAQRAGDYVFRYGGEEFCIITSGLNRDE 268

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKK 249
           +      LR  I    I     P   +T SAG   A    +   S ++  AD ALY AK 
Sbjct: 269 SMQFTEKLRCCILELNIENQRSPHRRLTASAGFWCASDLGEVTPSAMLLNADNALYRAKA 328

Query: 250 SGRNRVVCFSDI 261
           +GR+ VV F ++
Sbjct: 329 AGRDLVVDFDEM 340


>gi|197334284|ref|YP_002156049.1| ggdef domain protein [Vibrio fischeri MJ11]
 gi|197315774|gb|ACH65221.1| ggdef domain protein [Vibrio fischeri MJ11]
          Length = 516

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/179 (38%), Positives = 96/179 (53%), Gaps = 32/179 (17%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNE--KLSIVFFDIDYFKQINDNFGHPV 150
           I+ L+R D L+GL N   F       I S  S N+    SI+  DID+FK+INDN+GH V
Sbjct: 353 INVLNR-DYLTGLYNRGTFHSKVSPLIKSSNSNNKFKPYSIILLDIDFFKRINDNYGHLV 411

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-NSQI- 208
           GDKVIA +   +       +  GR GGEEF             I  ND+  +IE   QI 
Sbjct: 412 GDKVIAIVGRTMAQYPN--VLAGRYGGEEFI----------LFIRDNDIESVIEFTDQIR 459

Query: 209 -NISSGPSIH--ITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             IS+  ++H  IT+SAGI      +P   +  +I +AD+ALY +K +GRN++  + DI
Sbjct: 460 TQISNYNTLHEDITLSAGIT--TINKPNVLLDDVIEQADKALYYSKHNGRNKITHYQDI 516


>gi|251794641|ref|YP_003009372.1| diguanylate cyclase [Paenibacillus sp. JDR-2]
 gi|247542267|gb|ACS99285.1| diguanylate cyclase [Paenibacillus sp. JDR-2]
          Length = 386

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 98/200 (49%), Gaps = 26/200 (13%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125
           L +++I I  +LG I G +L     +   +   +  D L+G LN   F++S   Y     
Sbjct: 192 LYLVTIYILTILG-IMGFMLLWKEKTNQELLHYASYDDLTGALNRRTFMTSAKRYLNHYA 250

Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
              E +S + FDID FK IND +GH +GD V+  ++ ++           R GG+EF   
Sbjct: 251 KKGEAVSYLLFDIDSFKDINDKYGHHIGDLVLQDVTKRIRHYLDKDDLFVRYGGDEFGIL 310

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPS---IHITISAGIA-----ERCHKEPIST 235
             G  EQE++ LA       E  +I + S P+   +  TIS G+      +  H E + T
Sbjct: 311 LPGKGEQESSALA-------ERIKIMLQSAPTTLPVSYTISMGVLTVVPDQHTHMESMYT 363

Query: 236 IIYRADQALYVAKKSGRNRV 255
              + DQALY AK++GRN +
Sbjct: 364 ---KCDQALYTAKRNGRNNI 380


>gi|320158210|ref|YP_004190588.1| sensor histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|319933522|gb|ADV88385.1| sensor histidine kinase [Vibrio vulnificus MO6-24/O]
          Length = 387

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 94/195 (48%), Gaps = 15/195 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128
           I + L LG+    ++    I+   I Q S  D L+ + N  A        +S       +
Sbjct: 199 IMLVLTLGFTFPWMINARLIT--NIYQTSLRDTLTNIYNRRAMEEMIPRELSRASRLGAE 256

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LSI+  D+D+FK+IND +GH VGD+ ++ +   L           R+GGEEF      + 
Sbjct: 257 LSIIILDLDHFKRINDQYGHQVGDQTLSGIGQLLTSQLRKQDISFRIGGEEFLVVLPDTP 316

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISA--GIAERCHKEPISTIIYRADQALYV 246
            + A ++A  LR+ I  ++      P    T +A  G+A+    +    ++ RAD ALY+
Sbjct: 317 IESAVLVAEKLRQKIAETRF----APKQRETWTASFGVAQLITGDDWDALMKRADAALYL 372

Query: 247 AKKSGRNRVVCFSDI 261
           AK  GRNRV   SD+
Sbjct: 373 AKHKGRNRVCEVSDV 387


>gi|225848049|ref|YP_002728212.1| diguanylate cyclase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644455|gb|ACN99505.1| diguanylate cyclase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 437

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 100/194 (51%), Gaps = 17/194 (8%)

Query: 75  SITISLLLGYISGSILKELFI----SYNRISQLSRIDCLSGLLNH-------SAFISSLG 123
           S+ + LLL  I  + LK LFI    S + +S+++  D L+G  N        S   S   
Sbjct: 239 SLAVYLLLKDIENASLKLLFILNRISLDNVSKIALKDSLTGFFNRHMLDVLLSKETSRSK 298

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            +  K+SI+  D+D FK IND +GH VGD+V+   S  +        +  R GGEEF   
Sbjct: 299 RHGYKISILMMDLDNFKNINDIYGHLVGDEVLMHFSRIVKNNLRESDYPFRYGGEEFLIL 358

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQ 242
              + E+ A ++A  +RK +E+ +      P I  IT+S G+ E  + +     I  AD+
Sbjct: 359 LPHTDEEGALVVAERIRKSVESYKF-----PVIERITVSCGVREIKNLDNPYIDIEEADR 413

Query: 243 ALYVAKKSGRNRVV 256
            LY+AKK+G+NR V
Sbjct: 414 YLYIAKKTGKNRCV 427


>gi|167033056|ref|YP_001668287.1| diguanylate cyclase [Pseudomonas putida GB-1]
 gi|166859544|gb|ABY97951.1| diguanylate cyclase [Pseudomonas putida GB-1]
          Length = 523

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 93/175 (53%), Gaps = 14/175 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIND 144
           ++L+E     NR +Q    D L+GL N  +    +S L +     + +  DID+FK++ND
Sbjct: 355 NLLQERIGRLNRDAQ---TDPLTGLGNRRSLEFSLSLLEAEGRAFAAIELDIDHFKRVND 411

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N GH VGD+V+  L++ +         + R GGEEF     G+S + AA +A  LR  ++
Sbjct: 412 NHGHEVGDQVLRRLAELMRRCCREGDLLCRTGGEEFLMLLPGASLEVAAAVAERLRVTVQ 471

Query: 205 NSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++ +     P   +TIS G+A        +P+  +   AD+ALY AK+ GRNRV 
Sbjct: 472 DTPVE----PVGAVTISLGVARWDGDAGSKPMEALGL-ADRALYQAKQQGRNRVA 521


>gi|323497953|ref|ZP_08102962.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
 gi|323316998|gb|EGA70000.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
          Length = 489

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/250 (32%), Positives = 112/250 (44%), Gaps = 42/250 (16%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY-- 97
           A  +F+ N+ + +I + P     Y L             SL  G  S    ++ FISY  
Sbjct: 252 ACFMFVFNLSVVHIMVKPITRARYAL------------DSLSKGQSSQLTDQDTFISYEM 299

Query: 98  ----NRISQL-----SRIDCLSGLLNHSAFIS-----SLGSYNEKL--------SIVFFD 135
               NRI+++      +   L  L  H A  +     SL  +  +L        S+V  D
Sbjct: 300 RDFVNRINEIFNQLELKQKELEWLALHDALTTVGNRRSLQQHWSRLLEGQPRCTSVVLID 359

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           ID+FK  NDN+GH  GDKV+  ++  L         FV R GGEEF       S  ++  
Sbjct: 360 IDFFKPFNDNYGHIEGDKVLQIVAKTLQHCDSDCDKFVARFGGEEFCVILSSDSPIDSIE 419

Query: 195 LANDLRKIIENSQINISSGP-SIHITISAGIAERCH---KEPISTIIYRADQALYVAKKS 250
            AN LR  IE  QI     P S ++TISAG+ E C     + +   I  AD ALY AK+ 
Sbjct: 420 EANQLRVAIEQLQIAHEFSPISSYLTISAGVVE-CRLTSSDKLQDKIRLADAALYAAKQQ 478

Query: 251 GRNRVVCFSD 260
           GRNR+V   D
Sbjct: 479 GRNRLVVHVD 488


>gi|294013361|ref|YP_003546821.1| putative diguanylate cyclase [Sphingobium japonicum UT26S]
 gi|292676691|dbj|BAI98209.1| putative diguanylate cyclase [Sphingobium japonicum UT26S]
          Length = 387

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 93/184 (50%), Gaps = 12/184 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            +LK    S  R ++    D L+GL N  AF  +L           + L++ F DID+FK
Sbjct: 207 QLLKSNLESARRAAEH---DHLTGLPNRRAFEGTLREELAQAQKEGQPLAVAFCDIDHFK 263

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH  GD+V+ F++  L         V R GGEEF     G +  EA    + +R
Sbjct: 264 LINDTHGHDTGDRVLKFVAGLLSKASNDQCHVARHGGEEFVMLFRGKTAAEACEAVDGVR 323

Query: 201 KIIE-NSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + +   S +N S+G  +  ++ SAG+A     E     +  AD+ALY+AK+ GRNRV   
Sbjct: 324 QDLSTRSLVNRSNGERMERVSFSAGVANVLAYEDPRAALKAADRALYLAKEHGRNRVYLA 383

Query: 259 SDIE 262
           ++++
Sbjct: 384 AELD 387


>gi|187929770|ref|YP_001900257.1| diguanylate cyclase [Ralstonia pickettii 12J]
 gi|309781514|ref|ZP_07676250.1| GGDEF domain-containing protein [Ralstonia sp. 5_7_47FAA]
 gi|187726660|gb|ACD27825.1| diguanylate cyclase [Ralstonia pickettii 12J]
 gi|308919927|gb|EFP65588.1| GGDEF domain-containing protein [Ralstonia sp. 5_7_47FAA]
          Length = 555

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 83/158 (52%), Gaps = 9/158 (5%)

Query: 107 DCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+L    F++          +  E L +V  D+D+FK+IND +GH VGD  +   +
Sbjct: 399 DHLTGVLTRRRFLALFDTVLARAHNRAEPLVLVLADLDHFKRINDTWGHAVGDMALQRFA 458

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
                V  +   VGRLGGEEFA     ++ + A  +A  LR  +  +  +  +G  + +T
Sbjct: 459 SLATGVLRSSDLVGRLGGEEFAMVMGRTTLETATEVAERLRTAVAETDESFPTG--LSMT 516

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+      +  S ++ RAD ALY AK+SGRNR V 
Sbjct: 517 VSMGMTGCRPGDTASEMLKRADLALYRAKESGRNRHVA 554


>gi|127513905|ref|YP_001095102.1| diguanylate cyclase [Shewanella loihica PV-4]
 gi|126639200|gb|ABO24843.1| diguanylate cyclase [Shewanella loihica PV-4]
          Length = 650

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 87/161 (54%), Gaps = 8/161 (4%)

Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S L+  D L+ L N          +  S    ++ LSI+ FD D+FK++ND +GH +GD
Sbjct: 485 LSILALTDHLTQLPNRRYTYSKGEGYFKSKDEGHQPLSIILFDADHFKKVNDKYGHDIGD 544

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KV+  L++    +      VGR+GGEEF     G++ ++A  +A  L   +E+S  +   
Sbjct: 545 KVLIALANISNGLMRKQDLVGRVGGEEFLVILPGTTAEQALNVAQRLVTTVESSNFD-DV 603

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             +  +TISAGIA     +    ++ RAD ALY AK SGRN
Sbjct: 604 YMNFKLTISAGIACTDGDKSFEHLLKRADDALYRAKSSGRN 644


>gi|296451175|ref|ZP_06892916.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296880473|ref|ZP_06904435.1| probable signaling protein [Clostridium difficile NAP07]
 gi|296259996|gb|EFH06850.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296428427|gb|EFH14312.1| probable signaling protein [Clostridium difficile NAP07]
          Length = 572

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 81/153 (52%), Gaps = 10/153 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ + N  +F      Y  K    ++V  DID FK INDN+GH  GD VI  +++ + 
Sbjct: 425 DGLTNVYNRKSFDIMYEKYRAKDDNFALVMIDIDNFKLINDNYGHKFGDVVIKGITNTIC 484

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
           V+      V R GGEEF+      S +E A + +++R  I N + N      + +TISAG
Sbjct: 485 VMLEQDDKVFRYGGEEFSVLIRNKSGEEVADIVDNIRVAIANKKWN----EDVTVTISAG 540

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +A   H      ++  AD+ LY AK+ GRN+VV
Sbjct: 541 VA---HISDSKDVLEEADKNLYKAKQLGRNKVV 570


>gi|120601359|ref|YP_965759.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris
           DP4]
 gi|120561588|gb|ABM27332.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris
           DP4]
          Length = 827

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 79/156 (50%), Gaps = 9/156 (5%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N   F             ++  L+++  DID+FK +ND +GH  GD+V+   +
Sbjct: 651 DPLTGVRNRRQFFVDANREFARALRHDSGLAVLMLDIDHFKNVNDLYGHQAGDEVLRAFA 710

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
              V         GRLGGEEFAA    +S +EA   A  LRK +E   + +  G ++  T
Sbjct: 711 ACCVEALRAYDVFGRLGGEEFAALLPAASPEEAMETAERLRKRVERRSV-VYEGTALQCT 769

Query: 220 ISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           +S G+      +     ++ RAD+ALY AK  GRNR
Sbjct: 770 VSVGVTSLAAADLGFDDMLRRADRALYAAKDHGRNR 805


>gi|59711852|ref|YP_204628.1| GGDEF domain-containing protein [Vibrio fischeri ES114]
 gi|59479953|gb|AAW85740.1| GGDEF domain protein [Vibrio fischeri ES114]
          Length = 516

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/179 (38%), Positives = 96/179 (53%), Gaps = 32/179 (17%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNE--KLSIVFFDIDYFKQINDNFGHPV 150
           I+ L+R D L+GL N   F       I S  S N+    SI+  DID+FK+INDN+GH V
Sbjct: 353 INVLNR-DYLTGLYNRGTFHNKVSPLIKSSNSNNKFKPYSIILLDIDFFKRINDNYGHLV 411

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-NSQI- 208
           GDKVIA +   +       +  GR GGEEF             I  ND+  +IE   QI 
Sbjct: 412 GDKVIAIVGRTMAQY--PNVLAGRYGGEEFI----------LFIRDNDIESVIEFTDQIR 459

Query: 209 -NISSGPSIH--ITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             IS+  ++H  IT+SAGI      +P   +  +I +AD+ALY +K +GRN++  + DI
Sbjct: 460 TQISNYNTLHEDITLSAGIT--TINKPNVLLDDVIEQADKALYYSKHNGRNKITHYQDI 516


>gi|27367939|ref|NP_763466.1| sensor histidine kinase [Vibrio vulnificus CMCP6]
 gi|27359512|gb|AAO08456.1|AE016813_208 Sensor histidine kinase [Vibrio vulnificus CMCP6]
          Length = 387

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 9/169 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I Q S  D L+ + N  A        +S       +LSI+  D+D+FK+IND +GH VGD
Sbjct: 221 IYQTSLRDTLTNIYNRRAMEEMIPRELSRASRLGAELSIIILDLDHFKRINDQYGHQVGD 280

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + ++ +   L           R+GGEEF      +  + A ++A  LR+ I  ++     
Sbjct: 281 QTLSGIGQLLTSQLRKQDISFRIGGEEFLVVLPDTPIESAVLVAEKLRQKIAETRFAQKQ 340

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +   T S G+A+    +    ++ RAD ALY+AK  GRNRV   SD+
Sbjct: 341 RET--WTASFGVAQLITGDDWDALMKRADAALYLAKHKGRNRVCEVSDV 387


>gi|91974548|ref|YP_567207.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91681004|gb|ABE37306.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Rhodopseudomonas palustris BisB5]
          Length = 743

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 92/181 (50%), Gaps = 14/181 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           + E + S  +I+ ++R D L+GLLN  AF        + L  + E  S++  D+D FK +
Sbjct: 299 ITERYRSEQQIAHMARHDLLTGLLNRGAFHERMDEACARLRRWGETFSVIMLDLDRFKLV 358

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE--QEAAILANDLR 200
           ND+ GHP GD ++  +  +L         + RLGG+EFA     + +  +EA   A+ + 
Sbjct: 359 NDSLGHPAGDALLRAVVSRLKACIRETDVLARLGGDEFAVLQTRTKDSYEEAVAFADRIV 418

Query: 201 K-IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +I+  +I    G  + I+ SAGIA    H      +I  AD ALY AK +GRN  V F
Sbjct: 419 NCLIDPIEIE---GHQLVISTSAGIALAPQHGTDSDELIKNADLALYQAKAAGRNGYVTF 475

Query: 259 S 259
            
Sbjct: 476 E 476


>gi|269960040|ref|ZP_06174417.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835339|gb|EEZ89421.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 778

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 125/255 (49%), Gaps = 28/255 (10%)

Query: 29  IYFSIFFSIFIA---TVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLLL 82
           ++  +  S  IA   T+  I  +   Y+ L+P   L+  L E   N    I  +     +
Sbjct: 257 VWLELALSFGIASFCTITLIVLVLYRYV-LSPVSKLDKQLREIEANKRTNIEKLNSDDEI 315

Query: 83  GYISG---SILKELFISYNRISQLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFD 135
           G +S     + +EL   Y++   L+  D L+ L N    H      L   +E+L +V+ D
Sbjct: 316 GRLSSRFFDMYEELNNIYHKTKHLAETDHLTQLANRHRFHELATHELADPSEQLWVVYID 375

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVV-------FGTPMFVGRLGGEEFAAAALGSS 188
           +D FK +ND +GH +GDK++   S  +  V         +P F  RL G+EF A  L ++
Sbjct: 376 LDNFKYVNDKYGHELGDKLLQVFSRHIKNVCQKFTQQHNSPCFGARLSGDEF-AILLSTN 434

Query: 189 EQEAAI---LANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQAL 244
           +++A I   LA++L K I N  ++ SS  S  +T S GIA+       I+ ++  AD A+
Sbjct: 435 QKKADIPDMLASELLKPIHN--LSQSSTNSFPVTASVGIAQYPRDGADIAKLLSSADAAM 492

Query: 245 YVAKKSGRNRVVCFS 259
           Y AK+ G+N+   +S
Sbjct: 493 YQAKRGGKNQYAYYS 507


>gi|238756376|ref|ZP_04617687.1| Predicted diguanylate cyclase [Yersinia ruckeri ATCC 29473]
 gi|238705390|gb|EEP97796.1| Predicted diguanylate cyclase [Yersinia ruckeri ATCC 29473]
          Length = 365

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 92/181 (50%), Gaps = 7/181 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQ 141
           +  ++  L+    + S LS ID L+GL N     + LG    +      ++  DID+FK 
Sbjct: 172 TRKLVDHLYDEREKFSDLSMIDPLTGLYNRRGLENRLGMLLAQSPGNHYVLLLDIDHFKA 231

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            NDN+GH +GD+ +  ++  +     +   V R GGEEF       SE+ A+ LA  +R+
Sbjct: 232 YNDNYGHTMGDQALVRVAAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYASQLAERVRQ 291

Query: 202 IIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +    I    +   S  +T+SAGI+   H   +   +  AD+ALY AKK+GRN+V   S
Sbjct: 292 RVLGFDIPHVFNHKVSTTVTLSAGISP-LHPTDLGASLKAADEALYQAKKNGRNKVEFAS 350

Query: 260 D 260
           D
Sbjct: 351 D 351


>gi|228992783|ref|ZP_04152709.1| Sensory box/GGDEF family protein [Bacillus pseudomycoides DSM
           12442]
 gi|228767115|gb|EEM15752.1| Sensory box/GGDEF family protein [Bacillus pseudomycoides DSM
           12442]
          Length = 431

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 102/214 (47%), Gaps = 29/214 (13%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           F+F +  TP       + E+LS  I+  T          + L EL   Y    QL+ ID 
Sbjct: 232 FVFLLRATP-------VPEDLSRFIVKCT--------DITELDEL---YQEQEQLAAIDS 273

Query: 109 LSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ + N   F         S    N+ ++++ FDID FK++ND +GH  GD  +  L++ 
Sbjct: 274 LTEIYNRLKFQQLLEEKWKSEKRVNQMMALILFDIDDFKKVNDTYGHDFGDLALIQLAEL 333

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +     +     R GGE+F    + ++E+EA  +A  LR  IE  Q +  S     +T S
Sbjct: 334 MKSKIASQHIFARWGGEKFIILVINTTEKEAFQVAESLRFFIETKQFSSISK----LTAS 389

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G+A          +I RAD ALY AKK+G+N+V
Sbjct: 390 FGVALYEQGMTKEELIQRADIALYEAKKNGKNQV 423


>gi|254517033|ref|ZP_05129091.1| diguanylate cyclase [gamma proteobacterium NOR5-3]
 gi|219674538|gb|EED30906.1| diguanylate cyclase [gamma proteobacterium NOR5-3]
          Length = 456

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 10/177 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL    NR  +    D L+G  +  A+       +S    Y E   +V  DID+FK++N
Sbjct: 282 EELTQKLNRNREKLMRDTLTGAHSRLAYDEMLAQEMSRYRRYQEPFCLVMLDIDFFKRVN 341

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKI 202
           D FGH  GDK +  ++  +        ++ R+GGEEF    L  +E  AA+ L + +R  
Sbjct: 342 DRFGHAAGDKALQLVASLVSDRIRETDYLFRVGGEEF-VLLLPRTELAAAVPLVDAIRSD 400

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +S  +    P + IT+SAG+      +   TI  RAD A+Y AKK+GR+R+V   
Sbjct: 401 VGDSGFHYDDQP-VQITLSAGVTAMRSDDTPETIFARADDAMYRAKKAGRDRLVTLD 456


>gi|149376833|ref|ZP_01894589.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter algicola DG893]
 gi|149358840|gb|EDM47308.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter algicola DG893]
          Length = 537

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 9/161 (5%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +  L          +++L     DIDYFK++ND FGHP+GD+V+  LS
Sbjct: 379 DSLTGLFNHTHTLHLLDQEIVRARQKDQQLCFAMIDIDYFKKVNDTFGHPIGDRVLRSLS 438

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         +GR GGEEFA     + E +A  + N++R+   +  +  +     ++T
Sbjct: 439 MFLKQRLRKTDHIGRYGGEEFAIILPDTRESDARNVLNEIRERF-SELLQPAGDREFNVT 497

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            S G+A     +    +  RAD+ALY +K  GRN V    D
Sbjct: 498 FSCGVAA-WKGDTSQALCERADKALYRSKAEGRNCVTAAGD 537


>gi|170742454|ref|YP_001771109.1| diguanylate cyclase [Methylobacterium sp. 4-46]
 gi|168196728|gb|ACA18675.1| diguanylate cyclase [Methylobacterium sp. 4-46]
          Length = 353

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 92/176 (52%), Gaps = 11/176 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D L+GL N   F   L    E+ +       ++  DID+FK+ ND +GH  G
Sbjct: 177 RVESLT--DPLTGLGNRKLFEQVLRKSVEEAAANAAPTALIILDIDHFKRFNDVYGHLTG 234

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INI 210
           D+V+  ++  +  +      + R GGEEF       SE +A  LA  +R  +   + +  
Sbjct: 235 DRVLRLVALTMREMVDGRATIARFGGEEFGVIMPCGSEGDAVALAERIRTSVMGRELVKR 294

Query: 211 SSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           SSG S+  +TIS G+A     +   +++ RADQ ++ AK+SGRNRVV  + + + T
Sbjct: 295 SSGESLGRVTISVGVATHRPGDTAVSLLERADQCMFAAKRSGRNRVVVDTAVPDLT 350


>gi|324113244|gb|EGC07219.1| GGDEF domain-containing protein [Escherichia fergusonii B253]
          Length = 460

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 94/181 (51%), Gaps = 13/181 (7%)

Query: 88  SILKELF--ISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE---KLSIVFFDIDY 138
           ++L+ELF  +S + +     +D L+ LLN     + F   +   N     LS +  D+D 
Sbjct: 281 TLLRELFEEVSKHEVG----MDVLTKLLNRRFLPTIFKREIAHANRVSTPLSTLIIDVDK 336

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE +   +A  
Sbjct: 337 FKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFVIVLTEASENDTLRIAER 396

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 397 IRSRVEKTKLKAANGDDIPLSLSIGAAMFNGHPDYERLIQMADEALYIAKRRGRNRVELW 456

Query: 259 S 259
            
Sbjct: 457 K 457


>gi|296332333|ref|ZP_06874794.1| putative diguanylate cyclase or phosphodiesterase [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305673612|ref|YP_003865284.1| putative diguanylate cyclase or phosphodiesterase [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296150251|gb|EFG91139.1| putative diguanylate cyclase or phosphodiesterase [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305411856|gb|ADM36975.1| putative diguanylate cyclase or phosphodiesterase [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 358

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 16/169 (9%)

Query: 104 SRIDCLSGLLNHSAFI--------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +  D L+G+ N   F          +  + + + ++++ DID+FK IND +GH  GD+V+
Sbjct: 191 AHFDFLTGIYNRRKFEEITQVLYEQAANTPHFQFALIYMDIDHFKAINDQYGHHEGDQVL 250

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L  +L           R+GGEEFA      +  +AA +A  +R  + ++ I +++G  
Sbjct: 251 KELGSRLKQSIRNTDPAARIGGEEFAVLLPNCTLDKAAQIAERIRCAVSDTPIRLTNGEE 310

Query: 216 IHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + +TIS G +       H E +  +   ADQ LY AK++GRN+ VCFS+
Sbjct: 311 LSVTISLGASHYPNNTEHPESLPIL---ADQMLYKAKETGRNK-VCFSE 355


>gi|187926855|ref|YP_001893200.1| diguanylate cyclase [Ralstonia pickettii 12J]
 gi|241665184|ref|YP_002983543.1| diguanylate cyclase [Ralstonia pickettii 12D]
 gi|187728609|gb|ACD29773.1| diguanylate cyclase [Ralstonia pickettii 12J]
 gi|240867211|gb|ACS64871.1| diguanylate cyclase [Ralstonia pickettii 12D]
          Length = 338

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 12/175 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           F +   ++  +  D L+G+L    F       +     + E L  ++ D+D+FK IND +
Sbjct: 161 FAAERSLADRANTDHLTGMLARQRFFELGGFAVERARHHAEPLCALYLDVDHFKTINDTW 220

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+ +  LS+ L  V       GRLGG+EFA    G    +   + + ++  +  S
Sbjct: 221 GHAAGDEALVALSEALARVLRPKDLFGRLGGDEFAVLLPGCGLDDTLAVVDRIKAAVAAS 280

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +  +  GP   +TIS G A     + ++ ++  AD  L  AK+ GRNRV   SD+
Sbjct: 281 ESPV--GP---LTISVGAAPLRRGQDLARLLADADVGLMEAKRQGRNRVCVPSDL 330


>gi|150018143|ref|YP_001310397.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052]
 gi|149904608|gb|ABR35441.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052]
          Length = 568

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 80/139 (57%), Gaps = 6/139 (4%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +S++  DID+FK++ND +GH  GD V++  +  +         + R GGEEF A    + 
Sbjct: 434 VSMLVLDIDHFKKVNDTYGHSTGDLVLSETAMIIKQCLRKEDILVRWGGEEFVAVLPFTD 493

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
            +E+ I+A  +R  IEN +    +     IT+S GIAE+   E   +   RAD ALY AK
Sbjct: 494 SKESTIIAETIRLSIENHKFKFVN----KITVSIGIAEKDVVEDFHSWFRRADNALYNAK 549

Query: 249 KSGRNRV-VCFS-DIENNT 265
           ++GRN V +C++ +I NN+
Sbjct: 550 ENGRNTVCICYTNEIRNNS 568


>gi|118467440|ref|YP_886551.1| sensory box/response regulator [Mycobacterium smegmatis str. MC2
           155]
 gi|118168727|gb|ABK69623.1| sensory box/response regulator [Mycobacterium smegmatis str. MC2
           155]
          Length = 615

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 9/172 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPV 150
           +  R+  L+  D L+GL N  A ++ L +         ++++FFD+D  K IND  GH  
Sbjct: 171 AEERLRYLADHDHLTGLYNRRALMAHLEARLAPGQPGPVAVMFFDLDRLKAINDYLGHTA 230

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQIN 209
           GD  I+ L+ +L      P  + RLGG+EF        S  EA  LA  L+ ++   ++ 
Sbjct: 231 GDAFISILAQRLQRGDDAPKLIARLGGDEFVVVPDDPMSLDEATALAYRLQSVLRE-RVT 289

Query: 210 ISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  G  +  T+S GIA+    K+  S ++ RAD A+  AK SG NRV  FSD
Sbjct: 290 V-DGEMLTRTVSIGIAQGIPGKDSTSDVLNRADHAVLTAKGSGGNRVAVFSD 340


>gi|89897267|ref|YP_520754.1| hypothetical protein DSY4521 [Desulfitobacterium hafniense Y51]
 gi|89336715|dbj|BAE86310.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 232

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 109/224 (48%), Gaps = 18/224 (8%)

Query: 48  IFLFYIGLTPFYGL---EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
           +F+  IGL  FY      +++  N +L+I  I +    G  +  +       +N++   +
Sbjct: 6   LFIGMIGLGIFYAWFSHLFMIPLNNNLLIHCIILGFSFGLTNFLLANFYLYKHNKLKNQN 65

Query: 105 RI-------DCLSGLLNHSAFISSLGSYNEKL-SIVFFDIDYFKQINDNFGHPVGDKVIA 156
            I       D L+GLLN  A    L S NE + S++F DID F+  N+ +GH  GD V+ 
Sbjct: 66  EILKSRLTTDKLTGLLNRRALDLELNSSNELIYSVIFIDIDNFRVFNNQYGHKAGDTVLR 125

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +S+ +           R GGEE        +++ A  +A  +R  I+     +S+ P  
Sbjct: 126 KVSETIETTIRVGDRAYRYGGEEIVIILKDCNQKNAQRIAEKIRTRID----MLSNDPYP 181

Query: 217 HITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCF 258
            ITIS G+A  C +  EPI  +I +AD AL  AK +G+NR + F
Sbjct: 182 QITISLGVAS-CSEESEPIQDVIEKADFALLQAKGAGKNRTIVF 224


>gi|226357254|ref|YP_002786994.1| regulator protein [Deinococcus deserti VCD115]
 gi|226319244|gb|ACO47240.1| putative regulator protein, GGDEF domain; putative membrane protein
           [Deinococcus deserti VCD115]
          Length = 361

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 11/157 (7%)

Query: 106 IDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+ + N    +  L S         E L ++ FD+D FK IND +GH  GD+V+   
Sbjct: 206 LDVLTNVANRRQLMLWLTSRQNRAETTGEPLCVILFDLDRFKHINDTYGHDYGDEVLKRT 265

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  +          GR GGEEF      ++  EA  +A  +R  +   + ++     + +
Sbjct: 266 AAAVAGALRRGTLFGRWGGEEFLVVLPATARGEARGVAERIRHSVAEVRYDLP----VQV 321

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T+S G+A+    E +  ++ RAD+A+Y AK +GRN+V
Sbjct: 322 TVSLGVAQAQPGENLQALLKRADEAMYAAKHAGRNQV 358


>gi|326797147|ref|YP_004314967.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
 gi|326547911|gb|ADZ93131.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
          Length = 790

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 122/261 (46%), Gaps = 42/261 (16%)

Query: 31  FSIFFSIF---IATVIFIANIFLFYIGLTPFYGLEYI---LVENLSLVIISITISLLLGY 84
           +S+ F IF   +A V+ +  IF     LTP   L Y+   + +N       IT     G 
Sbjct: 270 YSLIFMIFTGVVAAVLLLLRIFFLNSILTPLNTLSYMTFRIGQNEK-----ITYKAATGV 324

Query: 85  ISGSILKELFISY--------NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
                L+  FIS          ++ Q ++ D L+G  N   F  +L         YN+K 
Sbjct: 325 KEMDELQNRFISMAEKKEQAEKKMIQQAQTDLLTGAGNRERFNKALFEQLREAKVYNQKF 384

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  D+D FK++ND  GH VGD+++   + +L+ +      + RLGG+EF     G++ 
Sbjct: 385 ALLLIDLDLFKEVNDTRGHQVGDEILRITAKRLMALCPKQQLICRLGGDEFIFLLSGTNV 444

Query: 190 QEAAI------LANDLRKIIENSQ--INISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
            +  +      +   +R+  E SQ  I++S    + +    G+ ER        ++  AD
Sbjct: 445 NKEYVHDFCQNIQTQVRQPFEFSQGEIHVSCSIGVAMYPEDGVDER-------EVMAAAD 497

Query: 242 QALYVAKKSGRNRVVCFSDIE 262
           QALY AK++GRN V  F D+E
Sbjct: 498 QALYSAKRAGRNEVKDF-DVE 517


>gi|152996744|ref|YP_001341579.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150837668|gb|ABR71644.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 714

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 80/165 (48%), Gaps = 10/165 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
             + + S  D L+GL N   F       I++     E LS++  DIDYFK  ND +GHP 
Sbjct: 544 EELQRFSYEDELTGLKNRRFFSEVMEHEITAAEQNQEPLSLLICDIDYFKTFNDTYGHPA 603

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+ +  L+  L   F     V RLGGEEF         ++    A +LR  +E +QI  
Sbjct: 604 GDEALKTLASLLSPFFYEGNIVCRLGGEEFVVVMPRVKREDCLRKAEELRAAVEKTQIEY 663

Query: 211 SSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRN 253
                 +ITIS GI+       +P   +  + D ALY AK+SGRN
Sbjct: 664 EGHLLENITISIGISSWPELISDP-RQLFQQTDSALYQAKESGRN 707


>gi|16126093|ref|NP_420657.1| GGDEF family protein [Caulobacter crescentus CB15]
 gi|221234863|ref|YP_002517299.1| two-component response regulator [Caulobacter crescentus NA1000]
 gi|13423291|gb|AAK23825.1| GGDEF family protein [Caulobacter crescentus CB15]
 gi|220964035|gb|ACL95391.1| two-component response regulator [Caulobacter crescentus NA1000]
          Length = 353

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 85/176 (48%), Gaps = 24/176 (13%)

Query: 100 ISQLSR---IDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
           + Q+ R    D L+ L N  AF   L             + +   DID+FK  ND +GH 
Sbjct: 173 LEQVRRDATTDGLTNLANRKAFDDELDRACAEAEEGGTTICLAVLDIDHFKGFNDTWGHQ 232

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI------- 202
            GD+VI +++  +  V   P F  R GGEEF   A+    + A+++A  L +I       
Sbjct: 233 TGDQVIRYVASVIGRVAAPPRFAARYGGEEF---AMIFPREAASVVATTLEEIRVEVSSR 289

Query: 203 -IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            ++    N   G    IT+S+G AER   E   +++ RAD ALY +K+ GRNRV  
Sbjct: 290 MLKRRSTNEDLGA---ITVSSGFAERKPGESGHSVMERADAALYASKRGGRNRVTA 342


>gi|317129799|ref|YP_004096081.1| diguanylate cyclase with GAF sensor [Bacillus cellulosilyticus DSM
           2522]
 gi|315474747|gb|ADU31350.1| diguanylate cyclase with GAF sensor [Bacillus cellulosilyticus DSM
           2522]
          Length = 564

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 14/177 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +Y +  + S    L+ L N   F + L         +++ +I+  D+D+FK+INDN+GH 
Sbjct: 388 NYEKTKKDSERCALTNLFNFRYFENRLLEKYDVPEKDDQFAIILLDLDHFKKINDNYGHQ 447

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS--- 206
            G+ ++  ++  L    GT   + R GGEEF     G + Q A  +A  LR+ IE+    
Sbjct: 448 SGNDILCQVAHLLQESVGTSGVLARYGGEEFVVLLEGDTAQYAEDMAETLRQNIESQLFK 507

Query: 207 ---QINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYV-AKKSGRNRVVCF 258
               +N   G  + IT S G+A +   +     + R AD+A+Y  AK+ GRN+V  +
Sbjct: 508 VSDDLNSGDGKLVRITASIGVATKLENDETGMSVLRNADRAMYTGAKQQGRNKVAYY 564


>gi|94972207|ref|YP_594247.1| diguanylate cyclase [Deinococcus geothermalis DSM 11300]
 gi|94554258|gb|ABF44173.1| diguanylate cyclase, GAF, HAMP domains protein [Deinococcus
           geothermalis DSM 11300]
          Length = 555

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 81/164 (49%), Gaps = 8/164 (4%)

Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q S  D L+GL N        +  ++ +    + LS++  D+D+FKQ ND +GH +GD
Sbjct: 379 LRQQSIRDPLTGLYNRRYLEETFTRELARVQRRRQPLSLLMIDVDHFKQHNDTYGHALGD 438

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++  L+  L   F T   V R GGEEF          +A   A  LR+ +EN  +  + 
Sbjct: 439 TLLRRLATHLQRFFRTEDIVCRYGGEEFVVLLPECDAPQAQARAEALRRSVENLAVTSND 498

Query: 213 GPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
              + +TIS G A    H      ++ RAD ALY AK  GRNRV
Sbjct: 499 AEFVALTISIGGASWPDHATTPEDLLARADAALYRAKHRGRNRV 542


>gi|39936049|ref|NP_948325.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009]
 gi|39649903|emb|CAE28425.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris
           CGA009]
          Length = 383

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 105/215 (48%), Gaps = 13/215 (6%)

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR---I 106
           +F +G++P  G   +  +  S+   ++ +SL +   + ++        + I  L R   +
Sbjct: 170 VFTVGVSPPSGGPLVFAD--SVFWQTLQLSLAVLGAALAMAILAAAVSDLIDDLRRERDL 227

Query: 107 DCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+GLLN   F     + +    E  S++  D+D+FK IND FGH VGD V+  +   L
Sbjct: 228 DHLTGLLNRRGFEEEIAAPMRRAPEGASLILCDVDHFKSINDTFGHDVGDVVLKEIGAIL 287

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITIS 221
                    VGR GGEEFA     +S  +A   A  LR+ I NS+I  + + P   +T S
Sbjct: 288 RKTARKGDLVGRWGGEEFAVFLPDASLSDATECAERLRQTIANSRIPGLDTRP---VTAS 344

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+A        + +   AD  LY+AK SGR+R V
Sbjct: 345 FGVATIREAGDWTALYKLADSRLYLAKASGRDRTV 379


>gi|320201820|gb|EFW76396.1| hypothetical protein ECoL_01053 [Escherichia coli EC4100B]
          Length = 296

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY---NEKLSI--VFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S        E L++  +  DID FK +ND +GH +GD V+  L
Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNTEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      ++++EA      + ++++N  I  S G  I+I
Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 247

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291


>gi|311106854|ref|YP_003979707.1| response regulator receiver modulated diguanylate cyclase
           [Achromobacter xylosoxidans A8]
 gi|310761543|gb|ADP16992.1| response regulator receiver modulated diguanylate cyclase
           [Achromobacter xylosoxidans A8]
          Length = 337

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 11/177 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L  S   + +L+  D L+GL N   F   L +  ++       +S++  D+D+FK  N
Sbjct: 157 QQLLESNMELRRLTNSDGLTGLGNRRYFDEYLNAEWQRARRDGREISMLMIDVDHFKAYN 216

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+ +  +++ +            R GGEEFA    G+    A + A  LR+ 
Sbjct: 217 DTYGHIAGDEALKRVANTIFASCDRSTDLAARFGGEEFALVLPGTPAGSARLAAEKLRRA 276

Query: 203 IENSQI---NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +E  QI   +   GP + ++I    A    ++P + +I  AD+ LY AK+ GRNRVV
Sbjct: 277 VEALQIPQKDTGDGPWLTVSIGTATAVPQGEQPCTDLIQVADRGLYQAKRQGRNRVV 333


>gi|120611590|ref|YP_971268.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
 gi|120590054|gb|ABM33494.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
          Length = 250

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 95/197 (48%), Gaps = 8/197 (4%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           E +L E   LV  S    L +  ++  + +     + R +     D L+G+LN +A I  
Sbjct: 49  ERLLRETRRLVRRSDRAELEMNQLNQQLTELAEQLHYRATH----DPLTGVLNRAAIIEQ 104

Query: 122 LGSYNEKLSI--VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
           +    E  S+  +  DID+FK++ND+FGHPVGD VI  + D+L  V      +GR+GGEE
Sbjct: 105 VNGRFETGSVALIVLDIDHFKKVNDSFGHPVGDSVIRGVVDRLKSVVPGSAQIGRVGGEE 164

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F              +A   R+ IE     +  G    +T S G++              
Sbjct: 165 FTVLLPEEDAMACERVAEAARRAIEGFDFGLPDGS--RVTASFGVSWLPGGCVFDDAYGL 222

Query: 240 ADQALYVAKKSGRNRVV 256
           AD+ALY AK++GRNRVV
Sbjct: 223 ADEALYGAKRAGRNRVV 239


>gi|71737249|ref|YP_275815.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557802|gb|AAZ37013.1| GGDEF domain protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320323358|gb|EFW79446.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327555|gb|EFW83567.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330876550|gb|EGH10699.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 308

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           + + LS++  DID+FK++ND +GH  GD V+  ++  L         V R GGEEF    
Sbjct: 175 HKQPLSLLMLDIDHFKKVNDEYGHHTGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVIL 234

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +    A ++   LR+ + N +      P++ +T+S G +     E   +++ RAD AL
Sbjct: 235 SNTGASSAELIGERLRQAVRNLEFR-ELDPALTMTVSLGCSTLLPTETADSLLRRADNAL 293

Query: 245 YVAKKSGRNRVVCFS 259
           YVAK+ GRNR+   S
Sbjct: 294 YVAKREGRNRLAMAS 308


>gi|51246161|ref|YP_066045.1| hypothetical protein DP2309 [Desulfotalea psychrophila LSv54]
 gi|50877198|emb|CAG37038.1| hypothetical protein DP2309 [Desulfotalea psychrophila LSv54]
          Length = 660

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 108/211 (51%), Gaps = 18/211 (8%)

Query: 63  YILVENLSLVIISITISLLL--GYISGSIL-----KELFISYNRISQLSRIDCLSGLLNH 115
           YI  ++  ++ +S+TIS +   G ++G+I+      E  ++  ++   +  D ++G  N 
Sbjct: 447 YIPQKDGQIIPVSLTISPMYNQGTVTGAIIIFQDIAERLLAEEQLKLAASHDSMTGAKNR 506

Query: 116 SAFISSLG-----SYNEKLSIVFF--DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
           +     +      S  +K +  F   DIDYFK+IND++GH VGD+V+  +S  +      
Sbjct: 507 AELERLMDLEIEQSARKKTACTFLMIDIDYFKKINDSYGHLVGDQVLKEMSHYIRSTLRK 566

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAER 227
               GR GGEEF         Q +  +A  LR  I ENS  N +   +  +T+S G+A  
Sbjct: 567 SDIFGRYGGEEFVIILPQEDLQHSRKIAERLRLGIKENSLQNNTLKKA--MTVSIGLASY 624

Query: 228 C-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             H      I+ +AD+ALY+AKK GR+R+V 
Sbjct: 625 PEHGRTSKDILLQADEALYIAKKQGRDRIVT 655


>gi|309389469|gb|ADO77349.1| diguanylate cyclase [Halanaerobium praevalens DSM 2228]
          Length = 513

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/131 (42%), Positives = 72/131 (54%), Gaps = 4/131 (3%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           YN   + + FDIDYFK +NDN+GH  GD+++  LS+ +          GR GGEEF   A
Sbjct: 384 YNSSFAFIIFDIDYFKNVNDNYGHDEGDRILKELSELIKNNIRQSDHFGRWGGEEFVLLA 443

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +  + A  LA  LRK I  +  N     +  IT S GIA   ++E I  +I RAD AL
Sbjct: 444 PETELKAAYKLAEKLRKAI--AAYNFIQAEN--ITASFGIAVIENEENIEELIKRADNAL 499

Query: 245 YVAKKSGRNRV 255
           Y AK  GRNRV
Sbjct: 500 YRAKAKGRNRV 510


>gi|218548895|ref|YP_002382686.1| hypothetical protein EFER_1540 [Escherichia fergusonii ATCC 35469]
 gi|218356436|emb|CAQ89059.1| conserved hypothetical protein, putative diguanylate cyclase
           (GGDEF) [Escherichia fergusonii ATCC 35469]
          Length = 321

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 6/165 (3%)

Query: 104 SRIDCLSGLLNHSAFISS-----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S     L +  EK  ++  DID FK +ND  GH +GD V+  L
Sbjct: 139 SNMDILTGLPGRRVLDESFDRQLLNAEPEKFYLLLLDIDRFKSVNDTLGHLIGDVVLRTL 198

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           ++ L         V R GGEEF      S++ +A +    + ++I  +QI    G  +HI
Sbjct: 199 AENLATWMRHNESVYRYGGEEFVIMIKASTDVDACMAGLRICELIAGNQIAYPQG-ELHI 257

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T +AGI+     E +  ++ RAD+A+Y  K +GRNR +   + E 
Sbjct: 258 TATAGISRAKPGETLDVVMGRADRAMYQGKLTGRNRCMFMDENEQ 302


>gi|37676066|ref|NP_936462.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37200606|dbj|BAC96432.1| GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 387

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 84/171 (49%), Gaps = 13/171 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I Q S  D L+ + N  A        +S       +LSI+  D+D+FK+IND +GH VGD
Sbjct: 221 IYQTSLRDTLTNIYNRRAMEEMIPRELSRASRLGAELSIIILDLDHFKRINDQYGHQVGD 280

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + ++ +   L           R+GGEEF      +  + A ++A  LR+ I  ++     
Sbjct: 281 QTLSGIGQLLTSQLRKQDISFRIGGEEFLVVLPDTPIESAVLVAEKLRQKIAETRF---- 336

Query: 213 GPSIHITISA--GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            P    T +A  G+A+    +    ++ RAD ALY+AK  GRNRV   SD+
Sbjct: 337 APKQRETWTASFGVAQLITGDDWDALMKRADAALYLAKHKGRNRVCEVSDV 387


>gi|332091306|gb|EGI96395.1| hypothetical protein SB521682_1755 [Shigella boydii 5216-82]
          Length = 296

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY---NEKLSI--VFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S        E L++  +  DID FK +ND +GH +GD V+  L
Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNTEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      ++++EA      + ++++N  I  S G  I+I
Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 247

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291


>gi|325497365|gb|EGC95224.1| diguanylate cyclase YddV [Escherichia fergusonii ECD227]
          Length = 313

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 94/181 (51%), Gaps = 13/181 (7%)

Query: 88  SILKELF--ISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE---KLSIVFFDIDY 138
           ++L+ELF  +S + +     +D L+ LLN     + F   +   N     LS +  D+D 
Sbjct: 134 TLLRELFEEVSKHEVG----MDVLTKLLNRRFLPTIFKREIAHANRVSTPLSTLIIDVDK 189

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE +   +A  
Sbjct: 190 FKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFVIVLTEASENDTLRIAER 249

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +R  +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 250 IRSRVEKTKLKAANGDDIPLSLSIGAAMFNGHPDYERLIQMADEALYIAKRRGRNRVELW 309

Query: 259 S 259
            
Sbjct: 310 K 310


>gi|229072881|ref|ZP_04206079.1| GGDEF domain protein [Bacillus cereus F65185]
 gi|229082626|ref|ZP_04215089.1| GGDEF domain protein [Bacillus cereus Rock4-2]
 gi|228701058|gb|EEL53581.1| GGDEF domain protein [Bacillus cereus Rock4-2]
 gi|228710224|gb|EEL62200.1| GGDEF domain protein [Bacillus cereus F65185]
          Length = 352

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 102/208 (49%), Gaps = 18/208 (8%)

Query: 65  LVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHSAF 118
           L++ + +V + +  S++ GYI+      +L+  ELF    ++ Q + ID L+GL N   F
Sbjct: 150 LIKEIHIVGLYLISSIITGYITFISANYVLQSNELF---QKMKQYATIDALTGLGNVRQF 206

Query: 119 -------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  IS+    N+   ++  DID+FK +ND +GHP GD+V+  +   L      P  
Sbjct: 207 DLEMNRHISNKNMKNDSFCLLLIDIDHFKYVNDTYGHPAGDEVLKQVGCILRETSQFPDL 266

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
             R GGEEFA            +    +R  +E+    +     I IT+S G++E  ++ 
Sbjct: 267 AFRKGGEEFALLIPNKGLAYGILTGEQIRTAVESHSFQLLDETKIKITVSVGVSE--YEG 324

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
                I  AD ALY +K++GRN+V   S
Sbjct: 325 SPEQFIQAADDALYYSKRNGRNKVSSVS 352


>gi|330986672|gb|EGH84775.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 308

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           + + LS++  DID+FK++ND +GH  GD V+  ++  L         V R GGEEF    
Sbjct: 175 HKQPLSLLMLDIDHFKKVNDEYGHHTGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVIL 234

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +    A ++   LR+ + N +      P++ +T+S G +     E   +++ RAD AL
Sbjct: 235 SNTGASSAELIGERLRQAVRNLEFR-ELDPALTMTVSLGCSTLLPAETADSLLRRADNAL 293

Query: 245 YVAKKSGRNRVVCFS 259
           YVAK+ GRNR+   S
Sbjct: 294 YVAKREGRNRLAMAS 308


>gi|262192132|ref|ZP_06050293.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
 gi|262031981|gb|EEY50558.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
          Length = 473

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 21/170 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  ++  D L+G  N   F       IS     +  LS+   D+D+FKQ+NDN+GHP 
Sbjct: 312 KRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESNPLSLAVIDLDHFKQVNDNYGHPA 371

Query: 151 GD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GD    +V+A     +  V GT   + R GGEEF       ++QEA      +R  I   
Sbjct: 372 GDLVLQRVVALCQRHIAQV-GT---LCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMH 427

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               +S P   +T+S G+ +    E +  +  RADQA+Y AK  GRN+VV
Sbjct: 428 ----ASQP--QVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 471


>gi|239994289|ref|ZP_04714813.1| diguanylate cyclase [Alteromonas macleodii ATCC 27126]
          Length = 532

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 88/168 (52%), Gaps = 13/168 (7%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +LS  D L+ + N  AF       I+    Y+  L++V  D+D FK  NDN+GHP GD+ 
Sbjct: 360 RLSLSDPLTNIPNRRAFEMEMEKVIAMSKRYDWPLTVVILDVDSFKLYNDNYGHPKGDEC 419

Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-S 212
           +  ++  L  V+     F  R GGEEF A    + E+ A + A ++R  IE+  I  S S
Sbjct: 420 LKAVAIGLNEVITRNTDFCARYGGEEFVAILPNTDEKGAKVKAEEIRDAIESLGIEHSKS 479

Query: 213 GPSIHITISAGIAE----RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             S  IT S G+A       H   +++I+  AD+ALY AK  GRNR V
Sbjct: 480 TVSPVITASLGVATVNFVNHHNWTLTSILNTADKALYDAKTGGRNRCV 527


>gi|153834214|ref|ZP_01986881.1| sensory box/ggdef family protein [Vibrio harveyi HY01]
 gi|148869402|gb|EDL68408.1| sensory box/ggdef family protein [Vibrio harveyi HY01]
          Length = 626

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDIDYFKQINDNFGHP 149
           ++  LS  D L+ L N   F   L  +   L          +  FDID+FK+IND  GH 
Sbjct: 460 KLRNLSERDGLTNLWNRRKFEEQLAQHANMLERYPNTPTTCLALFDIDHFKRINDEMGHD 519

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+VI  +++ L+       FV R+GGEEFA     ++ QEA ++ N LR  +E     
Sbjct: 520 EGDRVICSVAETLLSGVRNTDFVARVGGEEFAVLMPHTTIQEAEVVLNRLRVAVE----- 574

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VC--FSDI 261
           +S   S  +T+S G ++       S   Y+ AD ALY +K +GRNRV +C  F DI
Sbjct: 575 LSGDGS--VTVSVGYSDLTADRTRS---YKCADIALYESKSAGRNRVSICHSFDDI 625


>gi|206891052|ref|YP_002249724.1| ggdef domain protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742990|gb|ACI22047.1| ggdef domain protein [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 133

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 71/125 (56%), Gaps = 2/125 (1%)

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           FDIDYFK+IND +GH  GDK++  +    +      + +GR GGEEF     G  E E+ 
Sbjct: 2   FDIDYFKKINDTYGHLSGDKILMEIVSLAIEFLPNRLTIGRYGGEEFCIIMPGIEENESF 61

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSG 251
            +    RK +  ++ +  SG +I+++IS G+      +   I  +I + D ALY AK++G
Sbjct: 62  KICEAFRKKVAETEFHTFSGETINLSISIGLTTFYGNKLITIDELIQKVDTALYKAKQTG 121

Query: 252 RNRVV 256
           RNRV+
Sbjct: 122 RNRVI 126


>gi|51473435|ref|YP_067192.1| response regulator PleD [Rickettsia typhi str. Wilmington]
 gi|51459747|gb|AAU03710.1| response regulator protein [Rickettsia typhi str. Wilmington]
          Length = 450

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 78/162 (48%), Gaps = 8/162 (4%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N   F       I      N KL ++  DID FK +ND +GH  GDKV+
Sbjct: 287 LAAKDGLTGLFNRRYFDIHLKQMIEKANKENIKLYLLMCDIDNFKHVNDTYGHQAGDKVL 346

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-P 214
             +S  L         + R GGEEF          +A   A  +R  IE     I     
Sbjct: 347 TIVSRILKNTLRVTDLIARFGGEEFTILLTDIDISKAIETAERIRVKIEYMDFYIEGQIE 406

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  TIS G+ E   +E I +II RAD+A+Y AK +G+N+VV
Sbjct: 407 PLKKTISIGVTEYKKEESIESIIKRADKAMYKAKTTGKNKVV 448


>gi|313499782|gb|ADR61148.1| Diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida BIRD-1]
          Length = 774

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 14/206 (6%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           P  G+ ++  E  +  +     +L  GY++   + +L      +  LS  D L+G+ N  
Sbjct: 571 PRAGMRWVRGEA-TPEVGEQGCTLWHGYLTD--ISDLKGVEEELRALSVTDSLTGIHNRR 627

Query: 117 AFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            F   L    E+       L+++  DID+FK+IND FGH VGD+V+  L  ++       
Sbjct: 628 YFQERLKIELERAQRDGLPLAVIMLDIDHFKRINDRFGHAVGDRVLRSLCQRIAQRLRRT 687

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               RLGGEEF     GS   +A +LA +L + + N  +         +T S G+A    
Sbjct: 688 DVFCRLGGEEFMVLCPGSDADQARLLALELWQGVRNVPVEGVG----QVTASFGVAGWRS 743

Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255
            E    ++ RAD  +Y AK++GR+RV
Sbjct: 744 GEGADALLLRADAGVYAAKQAGRDRV 769


>gi|152973289|ref|YP_001338435.1| putative transmembrane protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150958138|gb|ABR80168.1| putative transmembrane protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 269

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 121/264 (45%), Gaps = 22/264 (8%)

Query: 11  IWLCH--EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           +W  H   K +    PH   +  ++   +FI T+ F  NI  F +   P +    I+ E 
Sbjct: 2   LWAWHVVTKAMLLTPPHFNYLVIALLSILFIGTIAFSNNITAFTLHSLPTFLACLIMAEG 61

Query: 69  ---------LSLVIISITISLLLGYISGS----ILKELFISYNRISQLSRIDCLSGLLNH 115
                      L I  IT+  ++   S +    ++ +L    N ++ LS +D L+GL N 
Sbjct: 62  EQWLRMTYCFMLPIAGITLQNIIQKRSDAFTQGLMDKLMHERNTLNDLSMLDPLTGLYNR 121

Query: 116 SAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
               + L +      +   ++  DID+FK  ND++GH +GD+ +  +S  +     +   
Sbjct: 122 RGLQNRLDTLLALDGDNHYVLLLDIDHFKAYNDHYGHMIGDQALIRVSAAIRNAVRSRDI 181

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN--ISSGPSIHITISAGIAERCH 229
           V R GGEEF      SSE+ A   A  +R+ + + +I    +   + ++TIS G+    +
Sbjct: 182 VARFGGEEFMVLLTNSSEETAWKTAERIRQRVYDLKIPHMFNESVATNVTISIGLTPLIN 241

Query: 230 KEPISTIIYRADQALYVAKKSGRN 253
            + I   + RAD ALY AK  GRN
Sbjct: 242 -DNIEQALARADGALYEAKNKGRN 264


>gi|74312107|ref|YP_310526.1| hypothetical protein SSON_1593 [Shigella sonnei Ss046]
 gi|73855584|gb|AAZ88291.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|323164346|gb|EFZ50151.1| hypothetical protein SS53G_5341 [Shigella sonnei 53G]
          Length = 296

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNH----SAFISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        +F   L + +   L ++  DID FK +ND +GH +GD V+  L
Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNTDPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      ++++EA      + ++++N  I  S G  I+I
Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 247

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291


>gi|126651943|ref|ZP_01724135.1| hypothetical protein BB14905_03420 [Bacillus sp. B14905]
 gi|126591212|gb|EAZ85321.1| hypothetical protein BB14905_03420 [Bacillus sp. B14905]
          Length = 435

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 111/238 (46%), Gaps = 21/238 (8%)

Query: 46  ANIFLFYIGLT-PFYGLEYILVENLSLVIISIT----ISLLLGYISGSILKELFISYNRI 100
           A ++L   G + PF G   +  +   L + + T    IS L     G+ L  +F     +
Sbjct: 193 AKVWLEVTGQSIPFTGESVVKAQEFELDLTNRTYQVRISALQHVNHGNGLLLIFTDMTEV 252

Query: 101 SQLSRI-------DCLSGLLNHSAFISSLG-SYNE------KLSIVFFDIDYFKQINDNF 146
             L R+       D L+ + N  AF      +Y E        ++V  DID+FK +ND +
Sbjct: 253 KNLQRMLEKQAYYDELTQIYNRRAFFQQCNQAYVEAKGTSSSFTVVLMDIDHFKHVNDTY 312

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+V+  +               R GGEEF  A  G +  E   LAN L + IE  
Sbjct: 313 GHAVGDQVLVHVVKACQDELKRGELFARYGGEEFVLALRGCTLVEGEALANKLCQSIELQ 372

Query: 207 QINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            +  + G     TIS G+AE  + +E +  ++ +AD+ALY AK++GRNRV  + D E 
Sbjct: 373 PLKTTEGIIT-TTISCGVAEGTNGEETLYQLLNKADKALYSAKQAGRNRVHVYRDNEK 429


>gi|296128104|ref|YP_003635354.1| diguanylate cyclase/phosphodiesterase [Cellulomonas flavigena DSM
           20109]
 gi|296019919|gb|ADG73155.1| diguanylate cyclase/phosphodiesterase [Cellulomonas flavigena DSM
           20109]
          Length = 580

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 20/165 (12%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R +  + +D L+GL +  A+ ++L       G   + LS+   DID+FK +ND  GH  G
Sbjct: 164 RYASTAGVDALTGLADRRAWDAALEQAIDRRGRRGQPLSLALVDIDHFKLVNDERGHAAG 223

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++   +D    +    M +GR GG+EFA    G +  EA  LA+ L            
Sbjct: 224 DDLLRATADAWRTLDVPGMVLGRRGGDEFAVLLPGRTGAEAHALADRLCAAAPAP----- 278

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                    S G+AE    E ++ ++ R D ALY AK +GR R V
Sbjct: 279 --------ASCGVAEHVEGETVTEVLRRTDTALYAAKAAGRGRTV 315


>gi|73537827|ref|YP_298194.1| GGDEF [Ralstonia eutropha JMP134]
 gi|72121164|gb|AAZ63350.1| GGDEF [Ralstonia eutropha JMP134]
          Length = 297

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 82/170 (48%), Gaps = 6/170 (3%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQIND 144
           L+E      ++   +R D L+GLLN  A         +       S++  D+D FKQIND
Sbjct: 114 LRERASLTEQLEHQARTDSLTGLLNRRALERIAAQPADPAGPSTTSLILMDVDRFKQIND 173

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GHP GD+V+  ++D +  +      + R GGEEFA    G+S  EAA LA  L   I 
Sbjct: 174 RHGHPAGDQVLRAVADLMRDMVDPDHALARFGGEEFAVLVPGASADEAASLAQALCAAIC 233

Query: 205 NSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253
              I ++ G  + +T S G+A      P    +   AD A+Y AK  GRN
Sbjct: 234 AEPIRLADGTRLPVTASFGVATGLSGAPHWPRLFAAADAAMYRAKAEGRN 283


>gi|77360935|ref|YP_340510.1| GGDEF domain-containing protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875846|emb|CAI87067.1| conserved protein of unknown function ; putative GGDEF domain
           protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 298

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 96/192 (50%), Gaps = 19/192 (9%)

Query: 74  ISITISLLLGYISGSILKEL--FISYNRISQLSRIDCLSGLLNHSAFISSL-------GS 124
           +S+ I   L Y   ++L  L   I YNR+ +L+  D L+GL N S F  +L         
Sbjct: 109 LSVAIEKKLQYFHSALLYPLRNAIMYNRVLKLATKDALTGLSNRSQFNDTLLQKLENCRR 168

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV---VFGTPMFVGRLGGEEFA 181
           Y    S++  D+D FKQ+NDNFGH VGD V+   +  LV+   + GT   V R GG+EFA
Sbjct: 169 YQRPFSLMLLDLDSFKQVNDNFGHKVGDDVLKEFA--LVLNSSIRGTDS-VFRFGGDEFA 225

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                       ++A  + + ++NS+I         +T S G      ++  + +  RAD
Sbjct: 226 ILIEDPEFTTNKVIAERIMQRVKNSKI----MAQYSVTTSIGFTLASSQDTENDVFSRAD 281

Query: 242 QALYVAKKSGRN 253
           + LY AK +GRN
Sbjct: 282 KGLYKAKAAGRN 293


>gi|317132906|ref|YP_004092220.1| diguanylate cyclase [Ethanoligenens harbinense YUAN-3]
 gi|315470885|gb|ADU27489.1| diguanylate cyclase [Ethanoligenens harbinense YUAN-3]
          Length = 526

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 6/165 (3%)

Query: 100 ISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           + + +  D L+G+ N   F       L       S+++FD+DYFK+IND  GH  GD+V+
Sbjct: 354 LQEQAERDGLTGIYNRQTFTRLAEQQLRQGAGPWSVLYFDMDYFKRINDTCGHIFGDQVL 413

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
                 +  V G      R GGEEF     G + +EA +LA  +RK +E   + +  G  
Sbjct: 414 CETCTCVAAVIGEKTLFCRAGGEEFMVFLRGYTAKEARLLAEAMRKEVEG-HMFVHEGVI 472

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + +TIS G+    +          ADQ LY AK  GRN V  +S+
Sbjct: 473 VPVTISVGVVT-AYTLTFDDYYRYADQMLYQAKSEGRNCVRVWSE 516


>gi|300717917|ref|YP_003742720.1| diguanylate cyclase [Erwinia billingiae Eb661]
 gi|299063753|emb|CAX60873.1| Putative diguanylate cyclase [Erwinia billingiae Eb661]
          Length = 535

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 10/158 (6%)

Query: 105 RIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           + D ++ LLN     + L    +  +  +++  DID+FK++ND +GH VGD VI  ++DQ
Sbjct: 367 QTDPMTELLNRRGLNAVLEYFLATRQPFAVLAVDIDHFKRVNDTWGHDVGDNVIKSVADQ 426

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITI 220
           L         V R GGEEF     G+    A  +A  +R+ IE  ++     P++ HI+I
Sbjct: 427 LGNSSRQTDVVCRNGGEEFLMIMPGADRDVAMAIAERVRRKIEQLEL-----PTVGHISI 481

Query: 221 SAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           S G+A     E  +  +  +AD ALY AK +GRNRV+ 
Sbjct: 482 SIGVAFWSPDEISMERVFKQADDALYQAKNAGRNRVIA 519


>gi|167571938|ref|ZP_02364812.1| hypothetical protein BoklC_19009 [Burkholderia oklahomensis C6786]
          Length = 444

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 11/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           + LF ++  + + +  D L+ + N S F             +N+ +++V  D+D+FK  N
Sbjct: 256 RRLFDAHASLVRTAAHDALTMVYNRSYFNEQFEKAFRHAHRHNQPIALVMVDVDHFKHYN 315

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD  +  ++  L  V   P  FV R GGEEFA    G+ E+ AA +A  +R+ 
Sbjct: 316 DAFGHLQGDTCLVAVAAALSGVANRPHDFVARYGGEEFAVVLPGTDERGAATIAEQVRQS 375

Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
           +E  +I     P  ++T+SAG A       E    ++  +D ALY AK  GRN
Sbjct: 376 VERLRIAADMPPG-YVTVSAGYATSSGNPFETPEALVAASDAALYRAKMLGRN 427


>gi|170020136|ref|YP_001725090.1| hypothetical protein EcolC_2123 [Escherichia coli ATCC 8739]
 gi|188493480|ref|ZP_03000750.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 53638]
 gi|191165050|ref|ZP_03026894.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B7A]
 gi|193067088|ref|ZP_03048057.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           E110019]
 gi|194431940|ref|ZP_03064230.1| diguanylate cyclase (GGDEF) domain protein [Shigella dysenteriae
           1012]
 gi|209918822|ref|YP_002292906.1| hypothetical protein ECSE_1631 [Escherichia coli SE11]
 gi|218554074|ref|YP_002386987.1| hypothetical protein ECIAI1_1554 [Escherichia coli IAI1]
 gi|218695078|ref|YP_002402745.1| hypothetical protein EC55989_1676 [Escherichia coli 55989]
 gi|300819483|ref|ZP_07099679.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
 gi|300823528|ref|ZP_07103657.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
 gi|300903792|ref|ZP_07121700.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|300917783|ref|ZP_07134428.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
 gi|300927404|ref|ZP_07143124.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|301326495|ref|ZP_07219842.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|309796732|ref|ZP_07691136.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
 gi|312971336|ref|ZP_07785513.1| uncharacterized protein ydeH [Escherichia coli 1827-70]
 gi|169755064|gb|ACA77763.1| diguanylate cyclase [Escherichia coli ATCC 8739]
 gi|188488679|gb|EDU63782.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 53638]
 gi|190904822|gb|EDV64527.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B7A]
 gi|192959678|gb|EDV90112.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           E110019]
 gi|194419848|gb|EDX35927.1| diguanylate cyclase (GGDEF) domain protein [Shigella dysenteriae
           1012]
 gi|209912081|dbj|BAG77155.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218351810|emb|CAU97529.1| conserved hypothetical protein [Escherichia coli 55989]
 gi|218360842|emb|CAQ98411.1| conserved hypothetical protein [Escherichia coli IAI1]
 gi|300404214|gb|EFJ87752.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|300415015|gb|EFJ98325.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
 gi|300416634|gb|EFJ99944.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|300523998|gb|EFK45067.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
 gi|300527982|gb|EFK49044.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
 gi|300846830|gb|EFK74590.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|308119614|gb|EFO56876.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
 gi|310336356|gb|EFQ01550.1| uncharacterized protein ydeH [Escherichia coli 1827-70]
 gi|315253965|gb|EFU33933.1| diguanylate cyclase domain protein [Escherichia coli MS 85-1]
 gi|320179774|gb|EFW54722.1| hypothetical protein SGB_03097 [Shigella boydii ATCC 9905]
 gi|323185949|gb|EFZ71306.1| hypothetical protein ECOK1357_0679 [Escherichia coli 1357]
 gi|332098382|gb|EGJ03355.1| hypothetical protein SD15574_0261 [Shigella dysenteriae 155-74]
          Length = 296

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY---NEKLSI--VFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S        E L++  +  DID FK +ND +GH +GD V+  L
Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNTEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      ++++EA      + ++++N  I  S G  I+I
Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 247

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291


>gi|89896374|ref|YP_519861.1| hypothetical protein DSY3628 [Desulfitobacterium hafniense Y51]
 gi|89335822|dbj|BAE85417.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 394

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 81/156 (51%), Gaps = 11/156 (7%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ +LN   FI    +         E+++ +  DID FK+IND +GH VGD V+   +
Sbjct: 233 DGLTNILNRKTFIERSNAVISLYLREQEQIAFLLIDIDDFKKINDKYGHFVGDAVLQDFA 292

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           D L          GR GGEEFA    G+ E++   +A  LR  I NS ++  +G  I+ T
Sbjct: 293 DTLRKQLRDYDLFGRYGGEEFAILLPGTDEKQVKEVAERLRGTIANSSVD--TGLKINYT 350

Query: 220 ISAGIAE-RCHKEPISTIIYR-ADQALYVAKKSGRN 253
           IS G       +E    ++Y+  DQALY+AK  G+N
Sbjct: 351 ISVGYCSITPDQETTIDMLYKLCDQALYMAKAHGKN 386


>gi|331677429|ref|ZP_08378104.1| putative GGDEF domain protein [Escherichia coli H591]
 gi|331073889|gb|EGI45209.1| putative GGDEF domain protein [Escherichia coli H591]
          Length = 298

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY---NEKLSI--VFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S        E L++  +  DID FK +ND +GH +GD V+  L
Sbjct: 131 SNMDVLTGLPGRRVLDESFDHQLRNTEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 190

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      ++++EA      + ++++N  I  S G  I+I
Sbjct: 191 ATYLASRTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 249

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 250 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 293


>gi|260773583|ref|ZP_05882499.1| sensory box/GGDEF family protein [Vibrio metschnikovii CIP 69.14]
 gi|260612722|gb|EEX37925.1| sensory box/GGDEF family protein [Vibrio metschnikovii CIP 69.14]
          Length = 613

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 89/171 (52%), Gaps = 20/171 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDIDYFKQINDNFGH 148
           N++ +LS  D L+ L N   F   L    E++          +V  DID+FK++ND  GH
Sbjct: 448 NKLRELSEKDSLTQLWNRRKFELELTHQVERIQAEGNAYPVCLVLLDIDFFKRVNDEQGH 507

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+VI  ++  L        F+ R+GGEEFA     +  ++A       ++IIE  + 
Sbjct: 508 DQGDRVIIDVARLLTQHLRRYDFIARIGGEEFAVIMPSTRIEQA-------QQIIERLRG 560

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCF 258
            + + P + +T+SAGI +       +T  Y+ AD ALY +KKSGRN+V  F
Sbjct: 561 AVEAEPHLSVTVSAGITDLTLD---ATRSYKCADIALYESKKSGRNQVSTF 608


>gi|134095065|ref|YP_001100140.1| hypothetical protein HEAR1864 [Herminiimonas arsenicoxydans]
 gi|133738968|emb|CAL62016.1| Conserved hypothetical protein, putative GGDEF domain
           [Herminiimonas arsenicoxydans]
          Length = 524

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 85/172 (49%), Gaps = 8/172 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSA----FISSLGSYNEK---LSIVFFDIDYFKQINDN 145
           L     ++S+L R D L+G LN       F   L     +   L I   D+D FK+IND 
Sbjct: 351 LETKLEQMSELVREDQLTGSLNRRGLEDIFERELARAERRGTPLCIAMLDLDDFKKINDK 410

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD+ +  L   +     +   + R GGEEF      +   EA      L++ +  
Sbjct: 411 YGHSAGDEALIHLVRVIKETLRSMDVIARFGGEEFLIVLPDTGMDEAVQTVTRLQREL-T 469

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            QI + +   + +T SAG+A R  +E    +I RAD+ALY AK++G+NRVV 
Sbjct: 470 KQIFMHNHTRLLMTFSAGVALRNEREDQRAMIERADKALYEAKRTGKNRVVA 521


>gi|330969422|gb|EGH69488.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 551

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 85/157 (54%), Gaps = 10/157 (6%)

Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +      S  S  E   + F   DID+FK++ND+ GHP+GD+VI  L+
Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRREDKPLCFAMLDIDHFKKVNDSHGHPMGDRVIKSLA 438

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L        F+GR GGEEFA     +  Q A  + +D+R     ++I+  + P+ +  
Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIQSAHRVLDDIRHRF--AEIHYPAQPADLFC 496

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T SAG+      +   ++  +AD ALY AK +GRNRV
Sbjct: 497 TFSAGVVSLGAHDDSLSLASQADTALYCAKHAGRNRV 533


>gi|317483714|ref|ZP_07942661.1| GGDEF domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316925030|gb|EFV46169.1| GGDEF domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 308

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 88/187 (47%), Gaps = 19/187 (10%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139
           G+ L+E      +   LS  D L+GL N   F++             + +S +  DID+F
Sbjct: 113 GNTLQENRRLIEKYRNLSLTDMLTGLPNRRGFLALAEKSFARASRKRQSISFIMADIDHF 172

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND  GH  GD+V+  ++ + +          R GGEEF      +    AA++A  L
Sbjct: 173 KKVNDRHGHEAGDEVLRVVAQRFLDCLRVEDICCRYGGEEFLVMLYDTDVIRAALVAERL 232

Query: 200 RKIIENSQINISSGPSIHITISAGIAE----------RCHKEPISTIIYRADQALYVAKK 249
           RK I    I+ + G  I + IS G+ E          +CH E I   +  +D  LY AKK
Sbjct: 233 RKSIAGKPIS-TRGEEIRVAISLGVTEVVAADYAGTRKCHAE-IRRAVQVSDAFLYKAKK 290

Query: 250 SGRNRVV 256
           +GRNRV 
Sbjct: 291 AGRNRVA 297


>gi|257485856|ref|ZP_05639897.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|298488009|ref|ZP_07006046.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298157288|gb|EFH98371.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|331012942|gb|EGH92998.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 308

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           + + LS++  DID+FK++ND +GH  GD V+  ++  L         V R GGEEF    
Sbjct: 175 HKQPLSLLMLDIDHFKKVNDEYGHHTGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVIL 234

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +    A ++   LR+ + N +      P++ +T+S G +     E   +++ RAD AL
Sbjct: 235 SNTGASSAELIGERLRQAVRNLEFR-ELDPALTMTVSLGCSTLLPAETADSLLRRADNAL 293

Query: 245 YVAKKSGRNRVVCFS 259
           YVAK+ GRNR+   S
Sbjct: 294 YVAKREGRNRLAMAS 308


>gi|241663896|ref|YP_002982256.1| diguanylate cyclase [Ralstonia pickettii 12D]
 gi|240865923|gb|ACS63584.1| diguanylate cyclase [Ralstonia pickettii 12D]
          Length = 555

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 83/158 (52%), Gaps = 9/158 (5%)

Query: 107 DCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+L    F++          +  E L +V  D+D+FK+IND +GH VGD  +   +
Sbjct: 399 DHLTGVLTRRRFLALFDTVLARAHNRAEPLVLVLADLDHFKRINDTWGHAVGDMALQRFA 458

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
                V  +   VGRLGGEEFA     ++ + A  +A  LR  +  +  +  +G  + +T
Sbjct: 459 SLATGVLRSSDLVGRLGGEEFAMVMGRTTLETATEVAERLRTAVAETDESFPTG--LSMT 516

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+      +  S ++ RAD ALY AK+SGRNR V 
Sbjct: 517 VSMGMTVCRPGDTASEMLKRADLALYRAKESGRNRHVA 554


>gi|170699368|ref|ZP_02890415.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           IOP40-10]
 gi|170135740|gb|EDT04021.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           IOP40-10]
          Length = 322

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 93/179 (51%), Gaps = 9/179 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           + +E   +  ++ + +  D L+G+ N   F + LG        Y   LS++ FD+D+FK 
Sbjct: 145 MQREREEAVAKLREHANRDGLTGIANRRFFEARLGDEFARWQRYGGDLSMLLFDLDHFKT 204

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH  GD V+   + ++  +       GR GGEEFA     ++  EA  +A+ LR 
Sbjct: 205 INDRFGHAAGDAVLRETARRVASIVRAQDTFGRFGGEEFALLLPCTNLDEAMRVADKLRD 264

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTI-IYRADQALYVAKKSGRNRVVCFS 259
            I ++ ++ + G S+ +T S G A        S + +  AD ALY AK+ GR+R + ++
Sbjct: 265 AIGSTPVD-AEGVSVPVTASVGGACATVGATASDVLVNEADTALYRAKRLGRDRSIAYT 322


>gi|262392421|ref|YP_003284275.1| sensory box/GGDEF family protein [Vibrio sp. Ex25]
 gi|262336015|gb|ACY49810.1| sensory box/GGDEF family protein [Vibrio sp. Ex25]
          Length = 626

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 89/176 (50%), Gaps = 23/176 (13%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHP 149
           ++  LS  D L+GL N   F   L  Y         +    +  FDID+FK+IND  GH 
Sbjct: 460 KLRNLSEKDGLTGLWNRRKFEEQLAQYAGIIERYPDSPPACLALFDIDHFKRINDELGHD 519

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GDKVI  +++ L+    +  FV R+GGEEFA     ++ +EA ++ N LR       + 
Sbjct: 520 EGDKVICSVAETLLKEVRSTDFVSRVGGEEFAVIMPHTTLEEAEVVLNRLR-------VA 572

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VC--FSDI 261
           +       IT+SAG ++        T  Y+ AD ALY +K +GRN V +C  F DI
Sbjct: 573 VQLRSDRAITVSAGYSDLTSDR---TRTYKCADIALYESKSAGRNCVSLCHSFDDI 625


>gi|255524596|ref|ZP_05391550.1| diguanylate cyclase [Clostridium carboxidivorans P7]
 gi|296185753|ref|ZP_06854160.1| diguanylate cyclase (GGDEF) domain protein [Clostridium
           carboxidivorans P7]
 gi|255511749|gb|EET88035.1| diguanylate cyclase [Clostridium carboxidivorans P7]
 gi|296049581|gb|EFG89008.1| diguanylate cyclase (GGDEF) domain protein [Clostridium
           carboxidivorans P7]
          Length = 393

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 10/170 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  LS  D L+GLLN   F       +  L    +  +++  DIDYFK +ND  GHP+G
Sbjct: 222 KLDYLSNHDILTGLLNRRCFSAQASEKMKILTETKKAAALILVDIDYFKDVNDKLGHPIG 281

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+   S   +        + R GGEEF      +S  EA ++A  +R  I+++ I ++
Sbjct: 282 DIVLKETSRIFMEHIKPNDLITRWGGEEFLVFLFDTSIDEAYVIAEKIRVAIQDNVI-VT 340

Query: 212 SGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I IT S GI+  +    E        AD ALY AK+ GRN+VV  S
Sbjct: 341 DKIQIKITASFGISLLKDNFSESFDASYKSADVALYQAKEQGRNKVVIAS 390


>gi|163793886|ref|ZP_02187860.1| Hypothetical protein ydeH [alpha proteobacterium BAL199]
 gi|159180997|gb|EDP65514.1| Hypothetical protein ydeH [alpha proteobacterium BAL199]
          Length = 305

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 7/165 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDK 153
           + +S +D L+G       +  L    ++         +   DID FK IND  GH VGD 
Sbjct: 132 AAISDLDPLTGAQTRQVMLRDLKREVQRARRSGTPGCLAIADIDRFKSINDGHGHAVGDS 191

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+A +S  L+        V R GGEEF      +  +EA  + + +R+ I    + I  G
Sbjct: 192 VLAAVSGLLIESLRPYDSVYRYGGEEFLLCLPETGPEEARRVLDRVRERIAGHPVMIDGG 251

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            ++ +TIS G+     + P+  +I RAD+ALY+AK+SGRNRV  +
Sbjct: 252 KNLVVTISFGLTLMTPRRPLEELIDRADRALYLAKESGRNRVEVW 296


>gi|330889354|gb|EGH22015.1| GGDEF domain-containing protein [Pseudomonas syringae pv. mori str.
           301020]
          Length = 220

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           + + LS++  DID+FK++ND +GH  GD V+  ++  L         V R GGEEF    
Sbjct: 87  HKQPLSLLMLDIDHFKKVNDEYGHHTGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVIL 146

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +    A ++   LR+ + N +      P++ +T+S G +     E   +++ RAD AL
Sbjct: 147 SNTGASSAELIGERLRQAVRNLEFR-ELDPALTMTVSLGCSTLLPAETADSLLRRADNAL 205

Query: 245 YVAKKSGRNRVVCFS 259
           YVAK+ GRNR+   S
Sbjct: 206 YVAKREGRNRLAMAS 220


>gi|262396686|ref|YP_003288539.1| GGDEF domain protein [Vibrio sp. Ex25]
 gi|262340280|gb|ACY54074.1| GGDEF domain protein [Vibrio sp. Ex25]
          Length = 327

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 84/179 (46%), Gaps = 9/179 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQINDN 145
           L I   ++  L+  D L+G+ N   F+    S L  Y  +     +   D+D FK +ND 
Sbjct: 150 LHIQIMKMEHLATTDDLTGIPNRREFMRQIESRLTEYRTQGIDFHVAILDLDNFKSLNDR 209

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GDK +    + +         + R+GGEEFA      S QEA      +R  +E 
Sbjct: 210 FGHDAGDKSLIHAVNTIQSHLLDCDLLARVGGEEFAIVLRSRSSQEALNTLETIRNALET 269

Query: 206 SQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + I   SG  +  T S G+ + C   +    ++ RAD ALY AK++GRNRV      EN
Sbjct: 270 TTIQ-HSGRDMSFTASIGVTQVCSLDDSFEPLVKRADLALYKAKETGRNRVEVHKTEEN 327


>gi|224373299|ref|YP_002607671.1| ggdef domain protein [Nautilia profundicola AmH]
 gi|223588497|gb|ACM92233.1| ggdef domain protein [Nautilia profundicola AmH]
          Length = 549

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 87/165 (52%), Gaps = 14/165 (8%)

Query: 107 DCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N           I++    NEKL+ +  D+DYFK +ND +GH  GD V+  L+
Sbjct: 379 DPLTNLFNRRHLENILPMLIAAAQRRNEKLAFLMIDMDYFKTVNDTYGHKAGDTVLKTLA 438

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHI 218
           + L+        V R GGEEF          E AI +A  +R  IEN++I + +   I  
Sbjct: 439 NILINNVRKSDIVIRYGGEEFLIILQNIKSYEDAINIAEKIRTSIENTKIQLDN-TVIQK 497

Query: 219 TISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           TIS GI+   E C K+    I Y AD ALY AK++GRN+VV F +
Sbjct: 498 TISIGISLFPEHC-KQGWECIKY-ADIALYKAKENGRNQVVLFHE 540


>gi|66047604|ref|YP_237445.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63258311|gb|AAY39407.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 551

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 85/157 (54%), Gaps = 10/157 (6%)

Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +      S  S  E   + F   DID+FK++ND+ GHP+GD+VI  L+
Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRREDKPLCFAMLDIDHFKKVNDSHGHPMGDRVIKSLA 438

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L        F+GR GGEEFA     +  Q A  + +D+R     ++I+  + P+ +  
Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIQSAHRVLDDIRHRF--AEIHYPAQPADLFC 496

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T SAG+      +   ++  +AD ALY AK +GRNRV
Sbjct: 497 TFSAGVVSLGAHDDSLSLASQADTALYCAKHAGRNRV 533


>gi|283778699|ref|YP_003369454.1| diguanylate cyclase [Pirellula staleyi DSM 6068]
 gi|283437152|gb|ADB15594.1| diguanylate cyclase [Pirellula staleyi DSM 6068]
          Length = 500

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 8/157 (5%)

Query: 104 SRIDCLSGLLNHSAFISSLG------SYNEKLS-IVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+ + N  AF   L        +N+ +S ++  D+D+FK+ ND  GH  GD+V+ 
Sbjct: 121 ARTDALTQVANRRAFDDELRRCLSERDHNKTVSTLMILDVDHFKKFNDTHGHQAGDEVLR 180

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++  L   F +   V R GGEEFA    G S     I A   R+ +  +      G S+
Sbjct: 181 GVARVLRNAFSSAELVARYGGEEFAIVFPGVSFAACQISAEKARQAVATANFRF-QGKSL 239

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +T SAG++E    +     I RAD+ALY +KK+GRN
Sbjct: 240 SVTASAGLSELLPTDNEQEWIRRADEALYASKKAGRN 276


>gi|260867979|ref|YP_003234381.1| hypothetical protein ECO111_1938 [Escherichia coli O111:H- str.
           11128]
 gi|257764335|dbj|BAI35830.1| conserved predicted protein [Escherichia coli O111:H- str. 11128]
 gi|323176647|gb|EFZ62239.1| hypothetical protein ECOK1180_5349 [Escherichia coli 1180]
          Length = 296

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY---NEKLSI--VFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S        E L++  +  DID FK +ND +GH +GD V+  L
Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNTEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      ++++EA      + ++++N  I  S G  I+I
Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 247

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291


>gi|254502053|ref|ZP_05114204.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
 gi|222438124|gb|EEE44803.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
          Length = 398

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 8/169 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           +L  ++ ++   +  D L+G+LN  A  + L S           L ++  D+D+FK IND
Sbjct: 223 QLMEAHQKLKDQAMHDALTGVLNRGAIFNLLESELCKAARTQAPLVVIMADLDHFKSIND 282

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD+V+  ++  +         VGR GGEEF     G+    A  +A  +R  + 
Sbjct: 283 RFGHLAGDEVLRTVAATIKDTLRGYDHVGRYGGEEFLILLSGTDTNMAVDVAERIRGTVA 342

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           N +I    GP I  TIS G+A          +I RAD ALY AK+ GRN
Sbjct: 343 NLEIMHKDGP-IRPTISQGLALSDPSGTAEQVIARADAALYKAKEDGRN 390


>gi|190891316|ref|YP_001977858.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190696595|gb|ACE90680.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|327194838|gb|EGE61672.1| two-component response regulator protein [Rhizobium etli CNPAF512]
          Length = 457

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 11/178 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
            L  S  +  +L+  D L+GL N     + L        +    LS++  DID FKQ+ND
Sbjct: 280 RLRASVKQTIELAVTDPLTGLYNRRYLDNHLNVLFNRSMARGRPLSVLITDIDRFKQVND 339

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+   ++++           R GGEEF  A   +S + AA +A  LR  +E
Sbjct: 340 TYGHDGGDEVLREFANRVRSTIRGADLACRYGGEEFVVAMPDTSPEVAAAVAERLRAAVE 399

Query: 205 NSQINIS-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++   +  +G ++++T S GIA R      P   ++ +AD ALY AK +GRNRVV  +
Sbjct: 400 SAPFMLKHAGQALNVTASFGIASRMGSVLTP-DQLMKQADLALYEAKNTGRNRVVAAA 456


>gi|171317239|ref|ZP_02906438.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           MEX-5]
 gi|171097614|gb|EDT42449.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           MEX-5]
          Length = 322

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 9/179 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           + +E   +  ++ + +  D L+G+ N   F + LG        Y   LS++ FD+D+FK 
Sbjct: 145 MQREREEAVAKLREHANCDGLTGIANRRFFEARLGDEFARWQRYGGDLSMLLFDLDHFKT 204

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH  GD V+   + ++  +  +    GR GGEEFA     ++  EA  +A+ +R 
Sbjct: 205 INDRFGHAAGDAVLRETARRVASIVRSQDTFGRFGGEEFALLLPCTNLDEAMRVADKVRD 264

Query: 202 IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I ++ ++ + G S+ +T S G A           ++  AD ALY AK+ GR+R + ++
Sbjct: 265 AIGSTPVD-AEGVSVPVTASVGGACATVGATAFDVLVNEADTALYRAKRLGRDRSIAYA 322


>gi|323220721|gb|EGA05165.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
          Length = 185

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 89/177 (50%), Gaps = 10/177 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGS----YNEK---LSIVFFDIDYFKQINDN 145
           +F+  N +   +  D L+ L N  A           Y E     S++  D+DYFK +ND 
Sbjct: 2   MFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAKRYREARQPFSVIQLDLDYFKSVNDR 61

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GD+V++  +  +          GR+GGEEF     G+++ +A  +A  +R+ I +
Sbjct: 62  FGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEFCIVLPGATKTQALQIAERIRQRIND 121

Query: 206 SQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +I ++   ++ I+ S GI  AE         +   AD+ LY AK+SGRNR +C SD
Sbjct: 122 KEILVTKSTTLRISASMGISSAEEYGDYDFEQLQSLADKRLYYAKQSGRNR-ICASD 177


>gi|296158019|ref|ZP_06840852.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. Ch1-1]
 gi|295891787|gb|EFG71572.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. Ch1-1]
          Length = 777

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 111/235 (47%), Gaps = 15/235 (6%)

Query: 38  FIA-TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96
           F+A + +F A  +    G    + +E ++   + +V I +  S +  +      +  F+ 
Sbjct: 134 FVAGSALFYATAYALLFGEPLTHDVEIVVW--MWVVAIGVPTSAVFHFGFYRFRRNHFLL 191

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++++QL+  D L+GL N  +F+          +   ++S +F DID FK +ND FGH V
Sbjct: 192 ESQLAQLAATDPLTGLQNRRSFVKHAERRLDTLAPETRISAIFLDIDNFKSLNDRFGHAV 251

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD  +  ++  L+        V R+GGEEF A  L      A  LA  LR  I   +   
Sbjct: 252 GDHALYEVAHALMEEASADDSVSRIGGEEF-ALLLCDGLTGALHLAERLRLAIAAIER-- 308

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
              P   +T S G+AE    E I  ++ RAD+AL  AK SGRNRV     +  + 
Sbjct: 309 ---PDGQLTASFGVAEHRSGESIMMLLDRADEALLRAKHSGRNRVCAERPLPRDA 360


>gi|255624521|ref|XP_002540486.1| conserved hypothetical protein [Ricinus communis]
 gi|223495390|gb|EEF21896.1| conserved hypothetical protein [Ricinus communis]
          Length = 141

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 75/131 (57%), Gaps = 6/131 (4%)

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK IND +GHP GD+V+   +  +         +GRLGGEEFA     +S +EA
Sbjct: 1   MLDIDFFKVINDTYGHPQGDQVLVACARTIENTIREKDLLGRLGGEEFAVVLPNTSLEEA 60

Query: 193 AILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKEPIST--IIYR-ADQALYVAK 248
            ++A  +R +I E S        S H TIS GI+  C  E I    ++Y+ AD ALY AK
Sbjct: 61  RVIAERIRVRIAELSFYTTQRIQSFHTTISIGIS--CATETIYAYELLYKHADLALYEAK 118

Query: 249 KSGRNRVVCFS 259
           +SGRN V+ +S
Sbjct: 119 QSGRNLVITYS 129


>gi|149176926|ref|ZP_01855535.1| probable response regulatory protein [Planctomyces maris DSM 8797]
 gi|148844181|gb|EDL58535.1| probable response regulatory protein [Planctomyces maris DSM 8797]
          Length = 691

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 11/172 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG---------SYNEKLSIVFFDIDYFKQINDNFG 147
           YN +   + +D L+ + N     + L             E LS++F D D+FK IND++G
Sbjct: 379 YNDLKLAASLDALTSVANRGELETQLAIMLSRIQKEQNPEPLSLIFIDADHFKNINDSYG 438

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+V+  L+        +   VGR GGEEF      ++ + A   A  LR  + N  
Sbjct: 439 HSTGDEVLVELARLFQHETYSGELVGRYGGEEFVILCPETALEHAVKKAERLRLAVSN-- 496

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + + +  +I +T S G+++    + + ++ +RAD ALY AK++GRN+V   +
Sbjct: 497 LKMENQSNIRVTASFGVSQYEPGDSLESLFHRADSALYQAKETGRNKVRALT 548


>gi|149190179|ref|ZP_01868454.1| GGDEF family protein [Vibrio shilonii AK1]
 gi|148835926|gb|EDL52888.1| GGDEF family protein [Vibrio shilonii AK1]
          Length = 412

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 88/176 (50%), Gaps = 21/176 (11%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           Q++  D L+ +    A    +     K ++   D+D+FK+ ND +GH  GD V+  ++ +
Sbjct: 236 QMAFNDRLTNIPGRRALEMDMKHLGRKFTVAMLDVDHFKKFNDTYGHDTGDDVLKLVASR 295

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI----------- 210
           ++ V G    V R GGEEF     G + +++ +  ++LR+ I + ++ I           
Sbjct: 296 MLSVGGNAR-VYRYGGEEFTILFKGKTAKDSKVYLDELREKIADYEMVIRNNAERPNDNK 354

Query: 211 ---------SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                    + G ++ IT+S G A+    +    ++ +AD+ALY AK+ GRN+V C
Sbjct: 355 KGAKQRSASNKGSTVSITVSIGAADSKSTKKPEEVLKKADKALYSAKEKGRNQVQC 410


>gi|90407481|ref|ZP_01215664.1| GGDEF domain protein [Psychromonas sp. CNPT3]
 gi|90311402|gb|EAS39504.1| GGDEF domain protein [Psychromonas sp. CNPT3]
          Length = 493

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 86/172 (50%), Gaps = 20/172 (11%)

Query: 101 SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           S+L+ +D L+ + N  A+   L         Y   L I   D+D+FK+IND FGH  GDK
Sbjct: 319 SELAHLDFLTKIPNREAWSERLTFEFSRYQRYQNPLKIAIIDMDHFKRINDQFGHLAGDK 378

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           VI  ++  L        F+ R GGEEFA      + ++A  +   L+K+       I+S 
Sbjct: 379 VINVVAQTLKKSLRNTDFIARYGGEEFAILLPEITNEQAVDV---LQKLC----AKIASI 431

Query: 214 P------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           P      +I ITIS G A     + I +   RAD ALY AK  GRN+VV F+
Sbjct: 432 PFKFKKDNISITISIGCASFDKGDNIDSAFERADNALYKAKNGGRNQVVFFA 483


>gi|329898138|ref|ZP_08272339.1| Alkyl hydroperoxide reductase subunit C-like protein [gamma
           proteobacterium IMCC3088]
 gi|328920893|gb|EGG28326.1| Alkyl hydroperoxide reductase subunit C-like protein [gamma
           proteobacterium IMCC3088]
          Length = 705

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 98/191 (51%), Gaps = 11/191 (5%)

Query: 73  IISITIS-LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
           ++S+ +S L+L Y++    +   ++  +  +L++ D L+G+ + + F        + LGS
Sbjct: 336 LVSLLVSGLVLVYVNQQKARNQRLAEAK--RLAQTDHLTGVWSRAGFEEGLEALRARLGS 393

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
               L I   D+D+FK IND +GH  GD V+  L+  +         + R GGEEF    
Sbjct: 394 DVRHLGICLLDVDHFKHINDTWGHATGDTVLRELAKVVKRELRDYDLLARWGGEEFVIML 453

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
            G S Q A  +A  +R+ + +   +   G S+ +TIS G+     K  +   + RAD A+
Sbjct: 454 EGVSSQVAKNVAERIRQAVASHVFSTELGQSVDVTISMGVT-LMSKGSLDQALERADNAM 512

Query: 245 YVAKKSGRNRV 255
           Y+AK  GRN+V
Sbjct: 513 YLAKTEGRNQV 523


>gi|330815349|ref|YP_004359054.1| Diguanylate cyclase [Burkholderia gladioli BSR3]
 gi|327367742|gb|AEA59098.1| Diguanylate cyclase [Burkholderia gladioli BSR3]
          Length = 394

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 1/134 (0%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            + LS++  D+D+FK IND +GH  GD V+   +D +         +GRLGGEEFA    
Sbjct: 250 GKPLSLLLVDLDHFKSINDTYGHAGGDNVLREFTDLMRSRLRGGDALGRLGGEEFAILLP 309

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            ++  +A  +A  LR  +   ++  ++G   + T S G+A R   E +  +  RADQALY
Sbjct: 310 NTTLADAYRIAERLRDEVSRHEVVTATGLCSYST-SGGLASRQPGETLEQLAARADQALY 368

Query: 246 VAKKSGRNRVVCFS 259
            AK +GRNRV   S
Sbjct: 369 DAKVAGRNRVCLHS 382


>gi|260777494|ref|ZP_05886388.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607160|gb|EEX33434.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 385

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 15/161 (9%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N  A        I+    + + LS++  DID+FK++ND +GH  GD+V+    
Sbjct: 228 DELTQLYNRRALEELLPKEIARSSRHKQPLSVLLLDIDHFKKVNDTYGHQAGDRVLRTTG 287

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSI 216
             L++         R GGEEF      +  ++A I+A  LR+ I+ +++   N+ S    
Sbjct: 288 KLLILQTRKDDLSFRYGGEEFLVLLPNTDVEKAVIVAEKLREAIKRARMLPTNVDS---- 343

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             T S G+ +   ++   T I RADQALY AK++GRN+V  
Sbjct: 344 -CTASFGVTQFNGEDDWQTAIERADQALYSAKENGRNQVTA 383


>gi|193214078|ref|YP_001995277.1| diguanylate cyclase/serine/threonine protein kinase [Chloroherpeton
           thalassium ATCC 35110]
 gi|193087555|gb|ACF12830.1| diguanylate cyclase and serine/threonine protein kinase with TPR
           repeats [Chloroherpeton thalassium ATCC 35110]
          Length = 606

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 10/175 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           +L+ L      + +L   D L+GL N   F             Y   LSI   DID+FK+
Sbjct: 432 LLERLREQAETLERLVTYDGLTGLANRRHFDEQFEYEFRRTRRYKRPLSIAMSDIDFFKK 491

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +NDNF H VGD+V+  ++            V R GGEEF      ++++ A   A  +RK
Sbjct: 492 VNDNFSHQVGDEVLKKVASIFRENVRAGDLVARYGGEEFVFIFTETNKESAIRAAEKIRK 551

Query: 202 IIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            IE+    N+ +G  + +TIS G+AE    +    +I  AD  LY AK++GRN+V
Sbjct: 552 AIEDYDWSNVHAG--LKVTISIGVAEDAGFDGCDELIAAADSKLYEAKRNGRNQV 604


>gi|28868945|ref|NP_791564.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213968727|ref|ZP_03396869.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
 gi|301381342|ref|ZP_07229760.1| GGDEF domain protein [Pseudomonas syringae pv. tomato Max13]
 gi|302060232|ref|ZP_07251773.1| GGDEF domain protein [Pseudomonas syringae pv. tomato K40]
 gi|302130021|ref|ZP_07256011.1| GGDEF domain protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28852185|gb|AAO55259.1| GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926660|gb|EEB60213.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
 gi|331016835|gb|EGH96891.1| GGDEF domain protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 308

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           + + LS++  DID+FK++ND +GH  GD V+  ++  L         V R GGEEF    
Sbjct: 175 HKQPLSLLMLDIDHFKKVNDEYGHHTGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVIL 234

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +    A ++   LR+ + N +      P++ +T+S G +     E   +++ RAD AL
Sbjct: 235 SNTGATAAELIGERLRQAVRNLEFR-ELDPALTMTVSLGCSTLLPTETADSLLRRADNAL 293

Query: 245 YVAKKSGRNRVVCFS 259
           YVAK+ GRNR+   S
Sbjct: 294 YVAKREGRNRLAMAS 308


>gi|260774238|ref|ZP_05883153.1| GGDEF family protein [Vibrio metschnikovii CIP 69.14]
 gi|260611199|gb|EEX36403.1| GGDEF family protein [Vibrio metschnikovii CIP 69.14]
          Length = 338

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 87/167 (52%), Gaps = 11/167 (6%)

Query: 101 SQLSRI------DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVG 151
           SQL+ +      D L GL N  AF + L +     + LSI+  DID+FK  ND+FGH  G
Sbjct: 170 SQLAEVQKDALFDPLCGLYNRRAFNNDLLAMLHAQQALSIILLDIDHFKSYNDDFGHLFG 229

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           D V+  ++ ++       M   R GGEEF       + + A   A  +R+ IE   + + 
Sbjct: 230 DSVLRAIAKRIQGNCREAMTAYRFGGEEFVILLPNMTLRSARQFAESVRRSIEKLSVRDR 289

Query: 211 SSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            SG  I +IT S G+AE    E   T++ RAD+ LY AK  GRNRV+
Sbjct: 290 RSGQQIGNITASFGVAEYQSLEAADTLVDRADKMLYQAKNLGRNRVM 336


>gi|224373793|ref|YP_002608165.1| diguanylate cyclase/phosphodiesterase [Nautilia profundicola AmH]
 gi|223589128|gb|ACM92864.1| diguanylate cyclase/phosphodiesterase [Nautilia profundicola AmH]
          Length = 686

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 101/199 (50%), Gaps = 21/199 (10%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSR--------IDCLSGLLNHSAFISSLGSY 125
           IS+ I++ + Y+   I+ +LF  Y++  Q  +         D L+GL N   F+  L   
Sbjct: 217 ISMIITMFIMYLLSIIVNKLFRVYDKTIQSEKHKLFIRANFDALTGLCNRECFMQKLKDA 276

Query: 126 -------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                  N+K +++F DIDYFKQIND  GH VGDKV+  L+++L         V R GG+
Sbjct: 277 YYDSIRNNKKFAVLFIDIDYFKQINDTDGHKVGDKVLKILAERLKKSVRKTDVVSRFGGD 336

Query: 179 EFAAAALGSSEQEAAILANDLRKIIE--NSQINISSGPSIHITISAGIA-ERCHKEPIST 235
           EF          E  I+    ++I+E    +I I+S    ++T S GI+    + E +  
Sbjct: 337 EFLVLLKDIHSIEDVIIYT--QRILEEIKKEIEINS-KKYYVTGSIGISIYPDNGEDLDK 393

Query: 236 IIYRADQALYVAKKSGRNR 254
           +I  AD A+Y +K  G++R
Sbjct: 394 LIIYADIAMYQSKNDGKDR 412


>gi|254458008|ref|ZP_05071435.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207085401|gb|EDZ62686.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 628

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 87/166 (52%), Gaps = 11/166 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ +LSR D L+ + N       L S        NE  SI+  DID+FK +ND++GH VG
Sbjct: 463 KLQKLSRTDQLTKVSNRMHIDDVLQSQYYRFYRDNELTSIILLDIDFFKSVNDDYGHIVG 522

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D VI   +  L         +GR GGEEF      ++  +A  LAN L+KII   Q N S
Sbjct: 523 DSVIIEFAKILQSSIRKGDILGRWGGEEFLIILPHTNLDQAMQLANKLQKII--FQNNFS 580

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +    H T S G++       + T+I  AD+ALY++K++GRN V  
Sbjct: 581 TVK--HKTASFGVSTFERGMSVETLIDSADKALYLSKENGRNCVTS 624


>gi|254229043|ref|ZP_04922463.1| ggdef domain protein [Vibrio sp. Ex25]
 gi|151938334|gb|EDN57172.1| ggdef domain protein [Vibrio sp. Ex25]
          Length = 349

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 84/179 (46%), Gaps = 9/179 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQINDN 145
           L I   ++  L+  D L+G+ N   F+    S L  Y  +     +   D+D FK +ND 
Sbjct: 172 LHIQIMKMEHLATTDDLTGIPNRREFMRQIESRLTEYRTQGIDFHVAILDLDNFKSLNDR 231

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GDK +    + +         + R+GGEEFA      S QEA      +R  +E 
Sbjct: 232 FGHDAGDKSLIHAVNTIQSHLLDCDLLARVGGEEFAIVLRSRSSQEALNTLETIRNALET 291

Query: 206 SQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + I   SG  +  T S G+ + C   +    ++ RAD ALY AK++GRNRV      EN
Sbjct: 292 TTIQ-HSGRDMSFTASIGVTQVCSLDDSFEPLVKRADLALYKAKETGRNRVEVHKTEEN 349


>gi|255616822|ref|XP_002539786.1| conserved hypothetical protein [Ricinus communis]
 gi|223502391|gb|EEF22597.1| conserved hypothetical protein [Ricinus communis]
          Length = 204

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 86/173 (49%), Gaps = 11/173 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQINDNFGH 148
           S   I  L+  D L+ + N  AF+      L +       L+ +  DID+FKQIND +GH
Sbjct: 19  SDREIRTLAMTDPLTKIFNRRAFMIQAEKELAAAERSGLPLAFLMLDIDHFKQINDKYGH 78

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+V+  + + L         +GR GGEEF A   G+  Q A  LA  LR  +  ++I
Sbjct: 79  AAGDEVLVRIVEVLSSHLRKQDTLGRYGGEEFCALLPGTDAQGAMALAEKLRLEVAMTRI 138

Query: 209 NISSGPSIHITISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRNRVVCF 258
            +    S+ +T+S G +   H  P      ++  AD+ALY AK  GRNR + +
Sbjct: 139 EVEEN-SLGLTLSIGGSTWEHLGPTKDYRELMEEADRALYQAKTGGRNRSLLY 190


>gi|331647059|ref|ZP_08348153.1| putative GGDEF domain protein [Escherichia coli M605]
 gi|331043842|gb|EGI15978.1| putative GGDEF domain protein [Escherichia coli M605]
          Length = 298

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S            L ++  DID FK +ND +GH +GD V+  L
Sbjct: 131 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 190

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      ++++EA      + ++++N  I  S G  I+I
Sbjct: 191 ATYLASWTRDYETVYRYGGEEFIIIVKATNDEEACRAGVRICQLVDNHAITHSEG-HINI 249

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 250 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 293


>gi|304409422|ref|ZP_07391042.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|307303780|ref|ZP_07583533.1| diguanylate cyclase [Shewanella baltica BA175]
 gi|304351940|gb|EFM16338.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|306912678|gb|EFN43101.1| diguanylate cyclase [Shewanella baltica BA175]
          Length = 581

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 92/184 (50%), Gaps = 17/184 (9%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDIDY 138
           G + K  F+      +++R+D L+G+LN  A        F+ +     +   ++ FD+D+
Sbjct: 387 GQMQKRKFM------RMARMDALTGILNRGAGQELGENLFVQATARGGD-FCVILFDLDF 439

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND+FGH  GD  +  + D L           R+GGEEFA     + E++   +A  
Sbjct: 440 FKRINDSFGHGSGDWALKKVVDSLKSHIRNGDVFARIGGEEFAILLPYADEEKGMEVAEQ 499

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            R  IE       SG    IT S G++     +  +  + +RAD ALY AK +GRN VV 
Sbjct: 500 CRARIEAIDTQ-HSGHKFVITASFGVSGLMADDLSLDPLFHRADMALYAAKANGRNAVVR 558

Query: 258 FSDI 261
           +SDI
Sbjct: 559 YSDI 562


>gi|225850678|ref|YP_002730912.1| signal transduction response regulator [Persephonella marina EX-H1]
 gi|225645562|gb|ACO03748.1| signal transduction response regulator [Persephonella marina EX-H1]
          Length = 430

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 98/194 (50%), Gaps = 16/194 (8%)

Query: 78  ISLLLGYISGSILKELFISY------NRISQLSRIDCLSGLLNHSAFISSLGSY------ 125
           I+LL  YI+   L   F+S        R  + + +D L+G+LN       L +       
Sbjct: 237 INLLFDYINLQKLSAQFLSLLTVKIAVRSVEDANVDPLTGVLNRRPMEFILNNQYQISKI 296

Query: 126 -NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
            N  +SI   DID FK+IND++GH VGD VI  +S  L         + R GGEEF    
Sbjct: 297 SNRPVSIALLDIDDFKKINDSYGHLVGDCVIKQVSSILQKSLRKSDLIFRFGGEEFLIFM 356

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQ 242
             + +++A  +   LRK IE   I I    +I +T+S G+  A     E ++ II RAD+
Sbjct: 357 PFTEKRDAFKVMEKLRKKIEEKDI-ICGKNTIKVTVSVGVEGATLHPNETVNDIIERADK 415

Query: 243 ALYVAKKSGRNRVV 256
            +  AK++G+N+VV
Sbjct: 416 KMLRAKRTGKNKVV 429


>gi|157145252|ref|YP_001452571.1| hypothetical protein CKO_00988 [Citrobacter koseri ATCC BAA-895]
 gi|157082457|gb|ABV12135.1| hypothetical protein CKO_00988 [Citrobacter koseri ATCC BAA-895]
          Length = 538

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 103/202 (50%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------IS 120
           L L+    T+ LL+ ++    ++  +F+  + +   +  D L+ L N  A        I 
Sbjct: 328 LGLLWALFTMMLLISWVVIRKMVSNMFVLQSSLQWQAWHDPLTRLYNRGALFERARVLIQ 387

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 +  S++  D+D+FK +ND FGH  GD+V++  +  +     +    GR+GGEEF
Sbjct: 388 RCHEQRQPFSVIQIDLDHFKSVNDRFGHQAGDRVLSHAAGLISGTIRSHDLAGRVGGEEF 447

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G++  +AA +A  +R+ + + +I I+ G ++ I+ S G+  A+         +  
Sbjct: 448 CIVLPGTTLVQAAQIAERIRQRVNDKEILIAKGTTLRISASLGVSGAQENGDYDFEQLQS 507

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRN+ VC  D
Sbjct: 508 LADRRLYLAKQAGRNQ-VCVRD 528


>gi|120553001|ref|YP_957352.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120322850|gb|ABM17165.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 565

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 92/182 (50%), Gaps = 17/182 (9%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           +EL  +  ++  +S  D L+ + N   F   L +       +  +LS++  DID+FKQ+N
Sbjct: 377 EELEQANEQLRAISLTDGLTHVANRRRFDEKLETEWNRALRHEHELSLILLDIDHFKQVN 436

Query: 144 DNFGHPVGDKVI----AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           D FGH VGD  +    + LSD+   V  +   V R GGEEFA     +    A  +A  +
Sbjct: 437 DRFGHLVGDDCLVALASILSDE---VQRSGDLVARYGGEEFAILLPTTDVAGAQQVAERM 493

Query: 200 RKIIENSQINISSGPS-IHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256
           R  +  + +N     S + +TIS G+A      +     +I RAD+ALY AK  GRNRVV
Sbjct: 494 RLSVARTPVNSGEHMSPVSLTISLGVATLTPNRQSDCQELIRRADEALYAAKSDGRNRVV 553

Query: 257 CF 258
            +
Sbjct: 554 VW 555


>gi|117924687|ref|YP_865304.1| cyclic nucleotide-binding protein [Magnetococcus sp. MC-1]
 gi|117608443|gb|ABK43898.1| cyclic nucleotide-binding protein [Magnetococcus sp. MC-1]
          Length = 320

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 9/167 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
           ++   +++D L+G+ N   F  S+     +       LS++  D+D+FK+ ND  GH  G
Sbjct: 151 KLETFAKVDPLTGIYNRRWFDESMQRQMRRVEHSQNPLSLIMLDVDHFKRYNDTHGHQGG 210

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+ +  L+  + +         R GGEEFA     +      ++A  LR  +E  +I   
Sbjct: 211 DEALIALAHTISLHLRPGDIAARYGGEEFAVVLPDTDAVSGRMIAERLRTAVEALEIKDD 270

Query: 212 SGPSIH-ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            G S+  ITIS G+A+     + +S +I  AD ALY AK  GRNRVV
Sbjct: 271 EGNSLSGITISLGVAQTSGTVDSVSELIATADAALYQAKNQGRNRVV 317


>gi|300923880|ref|ZP_07139896.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|300419877|gb|EFK03188.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
          Length = 302

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 109 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 168

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 169 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 228

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 229 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 288

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 289 KQAGRNR-VCASD 300


>gi|299530167|ref|ZP_07043593.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           S44]
 gi|298721824|gb|EFI62755.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           S44]
          Length = 306

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 7/173 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           ++L ++  +I  L R D L+GL N    +  L          +    I   DID+FKQ+N
Sbjct: 132 EKLALALKQIENLVRNDDLTGLANRRGVMDRLQQCIHAAQRRDAPFCIALLDIDFFKQVN 191

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD+V+      L          GR GGEEF      +   +A +L   +R+  
Sbjct: 192 DRYGHEGGDQVLRAFGQLLSSQIRATDCAGRYGGEEFLLVLCDTPLAQAGVLLERIREST 251

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E           + +T + G+ +    E    +I RAD A+Y  K +GRNRVV
Sbjct: 252 EALPWTQLVHKDLRVTCTLGVTQYRQGETAEALISRADAAMYRGKAAGRNRVV 304


>gi|54022105|ref|YP_116347.1| hypothetical protein nfa1410 [Nocardia farcinica IFM 10152]
 gi|54013613|dbj|BAD54983.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 618

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 20/169 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
            R++  + ID L+GLLN   F  +L +         + L++V  D+D F++IND+ GH  
Sbjct: 180 TRMASEADIDVLTGLLNRRGFDRALNTAIEHATRSGQGLALVLVDLDRFQKINDHLGHRA 239

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  ++D    +      + R GG+ FA     ++EQ A +L   LR  +       
Sbjct: 240 GDAVLQRVADTWSKLLAPDQRLARYGGDAFALLLPNTTEQAAILLTEQLRAAVTTG---- 295

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                     SAG+      E  S ++ RAD  LY AK++GRNR V  S
Sbjct: 296 ---------CSAGVTSWQPGESGSLLVSRADVGLYRAKQAGRNRTVLES 335


>gi|221197231|ref|ZP_03570278.1| diguanylate cyclase [Burkholderia multivorans CGD2M]
 gi|221203903|ref|ZP_03576921.1| diguanylate cyclase [Burkholderia multivorans CGD2]
 gi|221176069|gb|EEE08498.1| diguanylate cyclase [Burkholderia multivorans CGD2]
 gi|221183785|gb|EEE16185.1| diguanylate cyclase [Burkholderia multivorans CGD2M]
          Length = 508

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 9/170 (5%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFG 147
           ++  ++ +L+R D L+GL N  AF ++L     +       LS++F D+D+FK  ND +G
Sbjct: 329 VAEAKLYRLARTDSLTGLDNRGAFDAALAQEARRAARSGRPLSVLFVDVDHFKAYNDYYG 388

Query: 148 HPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  GD V+  ++             + R GGEEF      +  Q AA +A  +R+ I   
Sbjct: 389 HLAGDDVLRRVAQCASGCLRRATDHIARYGGEEFVVTLPDTDAQGAATVAEGIRRAIAAL 448

Query: 207 QINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
            I     P  H+T S G A   + +   +T++  AD ALY AK  GRNRV
Sbjct: 449 GIEHVKSPYGHVTASIGTATDAYGRMDAATLLQLADDALYRAKYGGRNRV 498


>gi|330964791|gb|EGH65051.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 308

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 8/170 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y   +Q +  D L+   N  A   SL         + + LS++  DID+FK++ND +GH 
Sbjct: 140 YRIATQTALRDPLTSTGNRIAMDQSLAREIEISSRHKQPLSLLMLDIDHFKKVNDEYGHH 199

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  L         V R GGEEF      +    A ++   LR+ + N +  
Sbjct: 200 TGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGVTAAELIGERLRQAVRNLEFR 259

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               P++ +T+S G +     E   +++ RAD ALYVAK+ GRNR+   S
Sbjct: 260 -ELDPALTMTVSLGCSTLLPTETADSLLRRADNALYVAKREGRNRLAMAS 308


>gi|319957354|ref|YP_004168617.1| response regulator receiver modulated diguanylate cyclase
           [Nitratifractor salsuginis DSM 16511]
 gi|319419758|gb|ADV46868.1| response regulator receiver modulated diguanylate cyclase
           [Nitratifractor salsuginis DSM 16511]
          Length = 430

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 91/181 (50%), Gaps = 21/181 (11%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           S + EL  S +   + ++ D L+GL N  AF       I    S N +LS++  D+D+FK
Sbjct: 249 SEITELISSRDFYRKQAKRDELTGLNNRFAFNRKFESLIPKALSENGQLSMILIDLDHFK 308

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GDKV+  ++  L    G   F+ R GGEEF   +  S + EA  LA ++R
Sbjct: 309 AINDRYGHDFGDKVLTDVARVLEQCIGPKDFLARWGGEEFVVLSQRSLD-EAIELAEEIR 367

Query: 201 KIIENSQINISSGPSIHITISAGI------AERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + I   +I   +G  +H +           A   HK     +  RAD+ALY AK  GRNR
Sbjct: 368 RKI--MEIKYENGVQLHCSCGVSTLNPEEDARDAHK-----MFRRADKALYQAKNLGRNR 420

Query: 255 V 255
           V
Sbjct: 421 V 421


>gi|239995920|ref|ZP_04716444.1| GGDEF domain protein [Alteromonas macleodii ATCC 27126]
          Length = 329

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 85/159 (53%), Gaps = 9/159 (5%)

Query: 104 SRIDCLSGLLNHSAF------ISSLGSYNEKLSI-VFFDIDYFKQINDNFGHPVGDKVIA 156
           SR+D L+GL N   +      +  L    EK S  +  DID+FK+IND +GH  GDKVI 
Sbjct: 162 SRVDGLTGLYNRRYWQERFDEMHKLCVRREKPSTALMLDIDHFKRINDTYGHQAGDKVIK 221

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            L+  +          GR GGEEFA     SS ++A I+A  +R++ +   +    G SI
Sbjct: 222 MLAALIKRCVRETDLAGRYGGEEFAIILNDSSVEDAKIVAERIRQLAQRLVVE-HEGESI 280

Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
             T+S G+A+     +     +  ADQALY AK++GRN+
Sbjct: 281 SFTVSLGLAQFSPDFKGAMAWLECADQALYEAKENGRNQ 319


>gi|254516333|ref|ZP_05128392.1| diguanylate cyclase (ggdef domain) [gamma proteobacterium NOR5-3]
 gi|219674756|gb|EED31123.1| diguanylate cyclase (ggdef domain) [gamma proteobacterium NOR5-3]
          Length = 515

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 17/178 (9%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           +EL      + +++  D L+GL N     ++L +       Y+ +  +   DID FK++N
Sbjct: 337 EELKAKNQELEKIAGTDVLTGLCNRLKLDAALKNEIDRADRYSLEFGVALADIDNFKRVN 396

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D++GH +GD V+  ++D L          GR GGEEF     G+S       AND+ K+I
Sbjct: 397 DSYGHQIGDDVLVGIADVLQNNLRKTDIAGRWGGEEFLIICPGTS-------ANDMLKLI 449

Query: 204 ENSQINISSGP---SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           E+ ++ I       +   T+S GI      +  ++I  RADQALY AK +G+N+V  +
Sbjct: 450 ESLRVKIEQYDFPIAGKQTVSVGITSYFPLDSAASITKRADQALYEAKGAGKNKVTQY 507


>gi|167031165|ref|YP_001666396.1| diguanylate cyclase [Pseudomonas putida GB-1]
 gi|166857653|gb|ABY96060.1| diguanylate cyclase [Pseudomonas putida GB-1]
          Length = 642

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 84/161 (52%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG----SYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q + +D L+GL N +A+   +      + E    L++   D+D+FK+IND++GH  GDKV
Sbjct: 480 QKALLDPLTGLPNRAAWSERVEREMLDWQENGGHLAMAILDLDHFKRINDSYGHLAGDKV 539

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++DQL        F+ R GGEEF      +    AA +A  LR  +E    +   G 
Sbjct: 540 LKIVADQLRKRLRGRDFIARFGGEEFVLLLPQTPPAAAAQVAELLRATVEACPFHF-KGE 598

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT S G+      E    ++ RAD ALY AK+ GRNRV
Sbjct: 599 RVVITTSIGLGAFRPGERSDQVLKRADAALYRAKEHGRNRV 639


>gi|172062135|ref|YP_001809787.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
 gi|171994652|gb|ACB65571.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
          Length = 452

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 91/179 (50%), Gaps = 14/179 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142
           + LF ++  + + S  D L+G  N        H+ F+ +     E LS++  D+D+FK  
Sbjct: 275 QRLFEAHTMLIRSSARDGLTGAFNRSHFNDHFHTLFLQAR-RQGEPLSLLMVDVDHFKAY 333

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD  +  +++ L      P   V R GGEEFA     +  + A ++A ++R+
Sbjct: 334 NDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEFAIVLPNTGARGARLVAEEVRE 393

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVC 257
            +    + + S P+  +++S G A     E +ST   +I  AD ALY AK  GRNRVV 
Sbjct: 394 AVLRLDLAMPSSPAGRVSVSVGCATVSADE-LSTPDALIEAADAALYRAKDGGRNRVVA 451


>gi|330830020|ref|YP_004392972.1| PAS:GGDEF domain-containing protein [Aeromonas veronii B565]
 gi|328805156|gb|AEB50355.1| PAS:GGDEF domain protein [Aeromonas veronii B565]
          Length = 650

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 6/158 (3%)

Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GLLN    + SL +Y    E+ ++VF D+D FK +NDN+GH  GD+++  ++ +L 
Sbjct: 221 DSLTGLLNRYGLMKSLEAYCGLGERFALVFMDLDNFKLVNDNYGHKAGDRLLERVAGRLK 280

Query: 164 VVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
            +    + + RLGG+EF A   LG+    A  +A+ +   +    + +S  P + I  S 
Sbjct: 281 QICPRDVELARLGGDEFTALVPLGNQGDRAQEVADQMLSQM-TKPLQLSGLPEVTIGGSI 339

Query: 223 GIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           GIA      +    +I RAD A+Y AK+ GR R   F+
Sbjct: 340 GIAIYPDDADDGDNLITRADMAMYQAKQMGRLRWQRFT 377


>gi|306813466|ref|ZP_07447656.1| hypothetical protein ECNC101_16212 [Escherichia coli NC101]
 gi|305853211|gb|EFM53651.1| hypothetical protein ECNC101_16212 [Escherichia coli NC101]
          Length = 296

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 2/135 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L ++  DID FK +ND +GH +GD V+  L+  L         V R GGEEF      ++
Sbjct: 159 LYLMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVYRYGGEEFIIIVKATN 218

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           ++EA      + ++++N  I  S G  I+IT++AG++    +EP+  +I RAD+A+Y  K
Sbjct: 219 DEEACRAGVRICQLVDNHAITHSEG-HINITVTAGVSRAFPEEPLDVVIGRADRAMYEGK 277

Query: 249 KSGRNRVVCFSDIEN 263
           ++GRNR + F D +N
Sbjct: 278 QTGRNRCM-FIDEQN 291


>gi|209525930|ref|ZP_03274464.1| diguanylate cyclase with PAS/PAC and GAF sensors [Arthrospira maxima
            CS-328]
 gi|209493607|gb|EDZ93928.1| diguanylate cyclase with PAS/PAC and GAF sensors [Arthrospira maxima
            CS-328]
          Length = 1041

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 103/206 (50%), Gaps = 12/206 (5%)

Query: 72   VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124
            ++  +T  L +    G +  +L I++  + ++  +D L+G+ N   F          L  
Sbjct: 835  MLKQLTEQLAIAIQQGELYHQLQIAHEELEKVYNLDSLTGIANRRHFDHILQQEWLQLQR 894

Query: 125  YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAA 183
              + LSI+  DIDYFK  ND +GH  GDK +  +++ +      P   V R GGEEF   
Sbjct: 895  EKQPLSIIMCDIDYFKCYNDTYGHIAGDKCLQRVANAIKNSLKRPRDLVARYGGEEFVIL 954

Query: 184  ALGSSEQEAAILANDLRKIIENSQINISSGPS--IHITISAGIAER--CHKEPISTIIYR 239
               +  +    ++  +++ +    +   + P+    +T+S GIA +   HK+  + +++ 
Sbjct: 955  LPNTPIEGGLEISQQIQEAVFKLNMQPGAIPANFQRVTVSMGIASKIPSHKQSPTQLLFD 1014

Query: 240  ADQALYVAKKSGRNRVVCFSDIENNT 265
            AD+ALY AK +GRN+ V  +  E+N+
Sbjct: 1015 ADRALYQAKNNGRNQYVIANYPEHNS 1040


>gi|71909382|ref|YP_286969.1| PAS:GGDEF [Dechloromonas aromatica RCB]
 gi|71849003|gb|AAZ48499.1| PAS:GGDEF protein [Dechloromonas aromatica RCB]
          Length = 328

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 92/172 (53%), Gaps = 11/172 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q + +D L+GL N  +F   L         Y E ++++  D+DYFK+ ND +GH  GD
Sbjct: 155 LQQQATMDGLTGLANRRSFDEKLHVEWSRSQRYGEPIALILADVDYFKRYNDCYGHQGGD 214

Query: 153 KVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  ++  L   VF       R GGEEFA    G+  Q A  +A  LR  +E S + + 
Sbjct: 215 ECLKAVAGILRREVFRPTDMAARYGGEEFAIILPGTDLQGALTVAERLRADMERSALPHA 274

Query: 211 SSGPSIHITISAGIAE-RCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSD 260
           +S  S  +T+S G+A     +E +S T++ +AD+ALY AK SGRN V    D
Sbjct: 275 ASEVSPWVTLSIGVAAIVPDREALSATLVAKADRALYKAKGSGRNVVRAGGD 326


>gi|46581471|ref|YP_012279.1| GAF domain/sensory box/EAL domain-containing protein [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450893|gb|AAS97539.1| GAF domain/sensory box/EAL domain protein [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311235123|gb|ADP87977.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfovibrio
           vulgaris RCH1]
          Length = 827

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 2/131 (1%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           ++  L+++  DID+FK +ND +GH  GD+V+   +   V         GRLGGEEFAA  
Sbjct: 676 HDSGLAVLMLDIDHFKNVNDLYGHQAGDEVLRAFAACCVEALRAYDVFGRLGGEEFAALL 735

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQA 243
             +S +EA   A  LRK +E   + +  G ++  T+S G+      +     ++ RAD+A
Sbjct: 736 PAASPEEAMETAERLRKRVERRSV-VYEGTALQCTVSVGVTSLAAADLGFDDMLRRADRA 794

Query: 244 LYVAKKSGRNR 254
           LY AK  GRNR
Sbjct: 795 LYAAKDHGRNR 805


>gi|85715174|ref|ZP_01046158.1| hypothetical protein NB311A_01280 [Nitrobacter sp. Nb-311A]
 gi|85698089|gb|EAQ35962.1| hypothetical protein NB311A_01280 [Nitrobacter sp. Nb-311A]
          Length = 264

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 93/177 (52%), Gaps = 10/177 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---------SIVFFDIDY 138
           S L++L I++ ++  ++  D L+   N +AF + + +Y +++         +++  D+D+
Sbjct: 74  SKLRQLAIAHEQLMVIASTDGLTSCFNRAAFTTLVDAYLDRVDRQEKGGEGALLVMDVDH 133

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +NDNFGH +GD+ +  ++  +         VGR+GGEEF+    G +     ++A  
Sbjct: 134 FKNVNDNFGHDMGDEALKLIAQSIKSTLREVDLVGRMGGEEFSVFLPGIAPDRVVMVAER 193

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +R+ ++        G   +++IS G A        S +   AD+ LY AK+ GR+RV
Sbjct: 194 IRETVKAVNF-CPQGIPCNLSISIGGATYVRTASFSELYKLADKLLYDAKRQGRDRV 249


>gi|315297436|gb|EFU56715.1| diguanylate cyclase domain protein [Escherichia coli MS 16-3]
          Length = 296

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S            L ++  DID FK +ND +GH +GD V+  L
Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      ++++EA      + ++++N  I  S G  I+I
Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKATNDEEACRAGVRICQLVDNHAITHSEG-HINI 247

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291


>gi|309388474|gb|ADO76354.1| diguanylate cyclase [Halanaerobium praevalens DSM 2228]
          Length = 843

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 9/173 (5%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +++ ++ +LS  D L+ L NHS F   L   + EK S+   DID FK  ND +GH  GD+
Sbjct: 675 LNHQKVKKLSVTDGLTKLYNHSYFDQELAKKDGEKYSVAILDIDNFKDFNDLYGHQAGDQ 734

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-- 211
           V+  LS+ L         V R GGEEF        EQE  IL   +++++E  + N+   
Sbjct: 735 VLKKLSELLKSAVRQKDIVARYGGEEF-VIYFSIIEQE--ILLQVIKRLMEKIR-NLEVC 790

Query: 212 -SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
                + +T+S GIA  +   +   ++I +AD ALY+AK SGR++     +I+
Sbjct: 791 FEDKKLGVTVSMGIAINKSGNDSAESLIKKADNALYIAKGSGRDQFKFHKNID 843


>gi|311279833|ref|YP_003942064.1| diguanylate cyclase [Enterobacter cloacae SCF1]
 gi|308749028|gb|ADO48780.1| diguanylate cyclase [Enterobacter cloacae SCF1]
          Length = 312

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 84/155 (54%), Gaps = 6/155 (3%)

Query: 107 DCLSGL----LNHSAFISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GL    +   +F + L   ++ KL I+  DID+FK+IND +GH VGD V+   +++
Sbjct: 132 DTLTGLPLRRILDESFDAQLSDESDGKLYILLLDIDHFKRINDTWGHLVGDGVLRAFAEK 191

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L     +   V R GGEEF       S+ EA      + + I + QI++     I IT++
Sbjct: 192 LRASTRSYEPVYRYGGEEFIVILKAHSQHEACRTGLRITQAIADYQIHVEPH-EIRITVT 250

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+      EP+   + RAD A+Y+ K+SGRNR +
Sbjct: 251 CGLTPVQQGEPLHRALERADAAMYMGKQSGRNRCM 285


>gi|300907296|ref|ZP_07124947.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|301306137|ref|ZP_07212214.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|300400932|gb|EFJ84470.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|300838637|gb|EFK66397.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|315253470|gb|EFU33438.1| diguanylate cyclase domain protein [Escherichia coli MS 85-1]
          Length = 460

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 93/183 (50%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136
           ++L+ELF       ++SR    +D L+ LLN     + F   +   N     LS++  D+
Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A
Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +++  ++G  I +++S G A          +I  AD+ALY+ K+ GRNRV 
Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYITKRRGRNRVE 454

Query: 257 CFS 259
            + 
Sbjct: 455 LWK 457


>gi|187920674|ref|YP_001889706.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
 gi|187719112|gb|ACD20335.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
          Length = 371

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 91/186 (48%), Gaps = 24/186 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ QL   D L+GL N   F   +         Y   ++ +F DID FK+IND +GH  
Sbjct: 188 ERLKQLGMTDSLTGLANRRYFDERMREEIMRACRYGVPVACLFIDIDSFKRINDTYGHQT 247

Query: 151 GDKVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           GD+ +A ++    Q V +  T   V R GGEEF AA L     +A  +A  +R  +E   
Sbjct: 248 GDRALAAVAACVRQQVRLGDT---VARYGGEEF-AALLQGDRADALTVAERVRLAVERLA 303

Query: 208 INISSGPSIHITISAGIAERC-HKEPI------STIIYRADQALYVAKKSGRNRV---VC 257
           +    G  I +T+S G+A R     P         ++  AD+A+Y AK++GRNR+   V 
Sbjct: 304 LQDDHGERIVLTVSIGVAARTISGTPAEAAKLGGAMMEEADRAMYQAKRNGRNRIEALVK 363

Query: 258 FSDIEN 263
             D+E 
Sbjct: 364 AGDVET 369


>gi|288923860|ref|ZP_06417943.1| diguanylate cyclase [Frankia sp. EUN1f]
 gi|288344799|gb|EFC79245.1| diguanylate cyclase [Frankia sp. EUN1f]
          Length = 1228

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 10/168 (5%)

Query: 97   YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
            Y      +  D L+GL N   F+             +   S    D+D FKQ+ND  GH 
Sbjct: 1059 YEEARHSAATDPLTGLPNRRHFVEQATVEADARLPADRPTSAAMIDVDRFKQVNDLHGHA 1118

Query: 150  VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            VGD+V+  ++ ++          GRLGGEEFA    G  +   A L   +R  +    + 
Sbjct: 1119 VGDEVLVEIAHRIERCLRRGDLAGRLGGEEFAVLVTGGPDVAHA-LGERVRLAVCERPVQ 1177

Query: 210  ISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
             S+GP +H+T+S G A     EP ++ ++  ADQ+LY AK +GRN+ V
Sbjct: 1178 TSAGP-LHVTVSVGTATVDPDEPSLAAVLAHADQSLYAAKSAGRNQTV 1224


>gi|241205122|ref|YP_002976218.1| response regulator receiver modulated diguanylate cyclase
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240859012|gb|ACS56679.1| response regulator receiver modulated diguanylate cyclase
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 443

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 91/177 (51%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKL------SIVFFDIDYFKQIND 144
           E      ++   +  D L+GL N   F  +     NE L      S+   DID+FK++ND
Sbjct: 261 ETLAQMRQLRAAAACDYLTGLYNRRYFYDNGPKLVNECLRLKVPSSVAILDIDHFKRLND 320

Query: 145 NFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH +GDKV+  ++++L  +F G+   + RLGGEEFA          A  L +++R  I
Sbjct: 321 TYGHEIGDKVLKAVANRLFTIFEGSDNLLSRLGGEEFAILFPQMDSAAATKLCDEIRSDI 380

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              ++  +    + +TIS GIAE    E     +  ADQ LY+AK  GRN+V  +SD
Sbjct: 381 SRLKVT-ADDEELGVTISIGIAEIAGYETFENYLNAADQFLYMAKHRGRNQV--YSD 434


>gi|241204911|ref|YP_002976007.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858801|gb|ACS56468.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 417

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 12/188 (6%)

Query: 88  SILKELF-ISYNRIS--QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           SIL+EL   + +RI   Q + ID L+  +   AF       IS    +   LS + FDID
Sbjct: 153 SILEELAGAAMDRIELMQSAAIDSLTEAMTRRAFKQEADQLISLALRHKHDLSCIVFDID 212

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK++ND  GH  GD+V+  ++             GRLGGEEFA        + AA +A 
Sbjct: 213 HFKKVNDTHGHAAGDEVLKAVASTCKTTLRAGDLFGRLGGEEFAVILPHVDREGAAAVAE 272

Query: 198 DLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            LR  + +  I    G ++ +T S G  A     + I T++ +AD A+Y AK  GRNR V
Sbjct: 273 KLRAAVASHIIRGDHG-ALTVTASFGTSALSIVSKEIETLLAQADGAMYQAKHGGRNRCV 331

Query: 257 CFSDIENN 264
            +S I  +
Sbjct: 332 SWSSIHAD 339


>gi|86747317|ref|YP_483813.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
 gi|86570345|gb|ABD04902.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Rhodopseudomonas palustris HaA2]
          Length = 743

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 92/181 (50%), Gaps = 14/181 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           + E + S  +I+ ++R D L+GLLN  AF        + L  + E  S++  D+D FK +
Sbjct: 299 ITERYRSEQQIAHMARHDLLTGLLNRGAFHERMDEACARLRRWGETFSVIMLDLDRFKLV 358

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE--QEAAILANDLR 200
           ND+ GHP GD ++  +  +L         + RLGG+EFA     + +   EA   A+ + 
Sbjct: 359 NDSLGHPAGDALLRAVVSRLKACIRETDVLARLGGDEFAVLQTRTKDSYNEAVAFADRIV 418

Query: 201 K-IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +I+  +I+   G  + I+ SAGIA    H      +I  AD ALY AK +GRN  V F
Sbjct: 419 NCLIDPIEID---GHQLVISTSAGIALAPQHGTDSDELIKNADLALYRAKAAGRNGYVTF 475

Query: 259 S 259
            
Sbjct: 476 E 476


>gi|120553201|ref|YP_957552.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120323050|gb|ABM17365.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 339

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 90/181 (49%), Gaps = 31/181 (17%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL--GSYNEKLS-----IVFFDIDYFKQINDNFGHPV 150
            R+ QL+ ID L+G+ N  +    L   + N + S     +V  DID+FK+IND +GH V
Sbjct: 160 RRLEQLATIDPLTGVKNRRSMDEELDVAAANAERSGLPYALVLLDIDHFKKINDEYGHGV 219

Query: 151 GDKVIAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           GD V+  L          SDQL           R GGEEF     G        + N+L+
Sbjct: 220 GDDVLTELVALLESNTRRSDQLF----------RYGGEEFVLLLPGVDGVNLRAVMNNLQ 269

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +++    +    GP   +T S G+A   H E + + + RAD ALY AK++GR+R+V   +
Sbjct: 270 QVLRK-YLKHPGGP---VTASFGVALLGHGESVDSWLARADNALYTAKETGRDRIVYAEE 325

Query: 261 I 261
           +
Sbjct: 326 V 326


>gi|254701220|ref|ZP_05163048.1| GGDEF domain protein [Brucella suis bv. 5 str. 513]
 gi|261751759|ref|ZP_05995468.1| predicted protein [Brucella suis bv. 5 str. 513]
 gi|261741512|gb|EEY29438.1| predicted protein [Brucella suis bv. 5 str. 513]
          Length = 386

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 84/169 (49%), Gaps = 18/169 (10%)

Query: 101 SQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           S+ S ID LS + N   F   +         +   +I+  D+DYFK++ND +GH  GD+V
Sbjct: 219 SEQSEIDALSQIYNRRGFDRHVMRRLMRKGPDTPYAIIMSDLDYFKRVNDTYGHDCGDRV 278

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213
           I      L      P    R+GGEEF     G+     A+ A+DL + +  +   +S SG
Sbjct: 279 IEAFGGLLRTHLPKPAVAARMGGEEFVVFMPGAD----AVAAHDLAQTLRTTMTALSFSG 334

Query: 214 PSIHI--TISAGIAE-RCHKEPISTIIY----RADQALYVAKKSGRNRV 255
            +     T S G+AE R  +    TI Y    RAD ALY AKK+GRNRV
Sbjct: 335 DAAEWMPTASFGVAEHRVGEGLYDTIRYDTIRRADGALYEAKKAGRNRV 383


>gi|253701549|ref|YP_003022738.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M21]
 gi|251776399|gb|ACT18980.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M21]
          Length = 306

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 95/182 (52%), Gaps = 20/182 (10%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S+  EL  +  ++ +L+ ID L+ L N       L S         E LS+V  DIDYFK
Sbjct: 126 SLQDELKKANEQLKRLTNIDHLTNLFNRRYLSEILESEFFRARRNRENLSLVIIDIDYFK 185

Query: 141 QINDNFGHPVGDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            +ND++GH  GD V   +A L+ Q +  + +     R GGEEF     G+S Q A ++A 
Sbjct: 186 NVNDSYGHQNGDVVLASVAGLAQQQLRAYDS---AARYGGEEFVLVLPGTSLQGAEMVAE 242

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRN 253
            LR+ +       S    + +TISAG+A      P    I ++  +AD+ALY AK++GRN
Sbjct: 243 RLRQSVLEFGFP-SPMEDLTLTISAGVA--TFPSPSIDNIDSLFRQADEALYRAKQTGRN 299

Query: 254 RV 255
           RV
Sbjct: 300 RV 301


>gi|34495986|ref|NP_900201.1| hypothetical protein CV_0531 [Chromobacterium violaceum ATCC 12472]
 gi|34101840|gb|AAQ58208.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 400

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 99/200 (49%), Gaps = 26/200 (13%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121
           L + II+  +++LL  +    L ++     ++  L+  D L+ L N   +       +++
Sbjct: 202 LVMWIIASAMAILLVRLLHKWLGQMRSLMQKLEALAGTDELTQLPNRRTWDIQIEMMLAT 261

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM----FVGRLGG 177
              Y + +++  FD+D+FKQ ND++GHP GD+++     ++ V+  + M       R GG
Sbjct: 262 ARRYRQPIAVALFDLDHFKQFNDSYGHPEGDRLLR----EVAVLIKSRMRQSDLFARFGG 317

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EEF  A +  +  +AA     LR  + + Q           T S G+      E I + +
Sbjct: 318 EEFVLALMDCNLDQAAARIESLRGNLPDQQ-----------TFSVGVTVWLEGERIHSTL 366

Query: 238 YRADQALYVAKKSGRNRVVC 257
            RAD+ALY+AK  GR+RVV 
Sbjct: 367 ARADKALYLAKNGGRDRVVS 386


>gi|322835424|ref|YP_004215450.1| diguanylate cyclase [Rahnella sp. Y9602]
 gi|321170625|gb|ADW76323.1| diguanylate cyclase [Rahnella sp. Y9602]
          Length = 374

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 111/203 (54%), Gaps = 25/203 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125
           L ++I+S+ IS LL  I+G  L+ L       ++ +  D L+G L   AF +   SY   
Sbjct: 185 LIIIILSMVISYLLSLIAGGYLRVL-------NEYASKDGLTGCLRREAFYAK-ASYELE 236

Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                N   S++  D+D+ + +N+ +GH  GD  I+ +++ ++       FVGR+GG+EF
Sbjct: 237 KSKKNNVPFSVLVIDLDHLRDVNNTYGHAKGDTAISLIAETILKSLRGTDFVGRVGGDEF 296

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIY 238
                 ++  +A ++AN +R  +++ +++      + +++S GI++ C K+   +  II 
Sbjct: 297 IVILKDTTPADALLIANRIRHSVKSLKLD-----DLSLSVSIGISQ-CEKQNATLQEIIS 350

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
           +AD  LY+AK+  RN VV  +DI
Sbjct: 351 KADTNLYLAKRQ-RNEVVFENDI 372


>gi|159897326|ref|YP_001543573.1| diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890365|gb|ABX03445.1| diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 408

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 87/168 (51%), Gaps = 11/168 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S L+ ID L+G+ N  A        I+      +  +++  DID FKQIND +GH  GD
Sbjct: 214 LSALASIDVLTGIANRRAINEYLEQAIAKWRRNQQGFAVIMLDIDCFKQINDRYGHHAGD 273

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L         +GR GGEEF       + Q+A ++A  LR+ I+  Q  + +
Sbjct: 274 SVLRHIALVLSEQVRINDLIGRWGGEEFLLIVDADTIQQATLMAERLRQAIQQ-QPTVWN 332

Query: 213 GPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              I  T+S GIA  C  H    + ++  AD ALY AK++G+NR + +
Sbjct: 333 DQVIQHTVSIGIAV-CGMHGFNEAQLLTAADLALYEAKETGKNRWIVY 379


>gi|89902786|ref|YP_525257.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
 gi|89347523|gb|ABD71726.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
          Length = 447

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 8/169 (4%)

Query: 90  LKELFISYNRISQLSR--IDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           LKEL +        +R   D  S LL   A       +   +S++  D+DYFK IND+F 
Sbjct: 283 LKELSVRDPLTQMFNRRYFDEQSALLYQQAM-----RHGWSVSVMVGDLDYFKSINDDFS 337

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD+V+  ++  L     +   V R GGEEF  A   S+ Q+AAI    LR  IE   
Sbjct: 338 HAIGDEVLRRVALILRKNTRSTDIVARYGGEEFVIAFPESTVQQAAIRCEALRAAIEQHT 397

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                 P + +T+S G+ +   +  I  ++  AD+ LY AK+SGRNRVV
Sbjct: 398 WQ-EVHPELRVTMSMGLCDDTKRGSIEKMLAAADEGLYEAKRSGRNRVV 445


>gi|54308256|ref|YP_129276.1| GGDEF family protein [Photobacterium profundum SS9]
 gi|46912684|emb|CAG19474.1| hypothetical GGDEF family protein [Photobacterium profundum SS9]
          Length = 339

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 79/155 (50%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+G+LN  AF      Y   N  LS +  DID FK  ND FGH +GD+V+  ++ +L 
Sbjct: 182 DALTGILNRRAFDRDFQHYIESNTPLSFILLDIDKFKDFNDKFGHLMGDQVLKTIARRLK 241

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIH-ITIS 221
           V         R GGEEFA       +  A   A   R+  E  S I+  +G  ++ IT S
Sbjct: 242 VNCRDYAQAYRFGGEEFAIILPHKMKASARQQAETFRRAFERISVIDKKTGQRVNSITAS 301

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+AE+   E    +I RAD  +  AKK GRNRV+
Sbjct: 302 FGVAEKQPNESGECLIDRADSFMNQAKKLGRNRVL 336


>gi|114561977|ref|YP_749490.1| diguanylate cyclase with PAS/PAC sensor [Shewanella frigidimarina
           NCIMB 400]
 gi|114333270|gb|ABI70652.1| diguanylate cyclase with PAS/PAC sensor [Shewanella frigidimarina
           NCIMB 400]
          Length = 374

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 13/171 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           YN++  L+  D L+GL N  AF  +L +       +++ L ++  D+DYFK  ND +GH 
Sbjct: 201 YNKLRHLAHTDKLTGLSNRHAFDDALQTNWNDSINHDQPLCLIIIDVDYFKMFNDQYGHV 260

Query: 150 VGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQ 207
            GDK +  ++  L  V  +      R GGEEF      S+   A  +A ++ R+I + S 
Sbjct: 261 NGDKCLQKIAQVLAEVLPSNNAMAARYGGEEFVVILPNSNPLTAEYIAKNIQRRINQLSF 320

Query: 208 INISSGPSIHITISAGIA-ERC--HKEPISTIIYRADQALYVAKKSGRNRV 255
            +I       I++S GIA ER   ++ P + ++  AD ALY AK +GRNR+
Sbjct: 321 TDIGLPAQTKISVSQGIACERSGQYRTP-TALVCAADTALYRAKSTGRNRI 370


>gi|324119325|gb|EGC13212.1| GGDEF domain-containing protein [Escherichia coli E1167]
          Length = 298

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S            L ++  DID FK +ND +GH +GD V+  L
Sbjct: 131 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDQFKLVNDTYGHLIGDVVLRTL 190

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      ++++EA      + ++++N  I  S G  I+I
Sbjct: 191 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 249

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 250 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 293


>gi|323497617|ref|ZP_08102634.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
 gi|323317366|gb|EGA70360.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
          Length = 427

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 95/173 (54%), Gaps = 15/173 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-SYNEK------LSIVFFDIDYFKQI 142
           LKE  I +   ++L+  D L+G +N  A    L  +Y+E       LS+++ DID+FK I
Sbjct: 259 LKEQNIHF---AELASRDALTGAMNRHAIRDWLDKNYDETNKLSKTLSVLYLDIDHFKSI 315

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH +GD ++   +  ++        + R GGEEF     G   +EA+ LA  +R+ 
Sbjct: 316 NDLYGHSMGDDILREFTMVVLSSLSASERLVRWGGEEFVVFCPGRGLEEASELAEQIRRK 375

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E ++I I       +T S G+A    +E  S ++ RAD+ALY AK+ GRNRV
Sbjct: 376 VE-ARIWIHGDK---LTTSIGVAT-LGEERTSDMLIRADEALYSAKRLGRNRV 423


>gi|325981379|ref|YP_004293781.1| response regulator receiver modulated diguanylate cyclase
           [Nitrosomonas sp. AL212]
 gi|325530898|gb|ADZ25619.1| response regulator receiver modulated diguanylate cyclase
           [Nitrosomonas sp. AL212]
          Length = 651

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 93/174 (53%), Gaps = 11/174 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL ++  ++   +  D L+ L N  + + +L           + + I+  DID+FK IND
Sbjct: 453 ELAVTNRKLEYYALTDMLTELPNRRSGMETLSETWSIANRSGQLMVIMLIDIDHFKSIND 512

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF-AAAALGSSEQEAAIL-ANDLRKI 202
           N+GH +GDKV+  +S  +           R+GGEEF     LG+++ +++IL A  LR  
Sbjct: 513 NYGHSIGDKVLKEVSSIIRKTARKGDTFCRMGGEEFLVVCQLGNADVKSSILFAERLRHQ 572

Query: 203 IENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           I   QIN+     I ITIS GIA +  +      ++  AD+ALY AK +GRNRV
Sbjct: 573 ISQQQINVDE-IHIQITISIGIALKEINMRNEDHLVIAADKALYAAKNAGRNRV 625


>gi|167564771|ref|ZP_02357687.1| hypothetical protein BoklE_19615 [Burkholderia oklahomensis EO147]
          Length = 444

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 11/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           + LF ++  + + +  D L+ + N S F             +N+ +++V  D+D+FK  N
Sbjct: 256 RRLFDAHASLVRTAAHDALTMVYNRSYFNEQFEKAFRHAHRHNQPIALVMVDVDHFKHYN 315

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD  +  ++  L  V   P  FV R GGEEFA    G+ E+ AA +A  +R+ 
Sbjct: 316 DAFGHLQGDTCLVAVAAALSGVANRPNDFVARYGGEEFAVVLPGTDERGAATIAEQVRQS 375

Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
           +E  +I     P  ++T+SAG A       E    ++  +D ALY AK  GRN
Sbjct: 376 VERLRIAADMPPG-YVTVSAGYATSSGNPFETPEALVAASDAALYRAKMLGRN 427


>gi|91778092|ref|YP_553300.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
 gi|91690752|gb|ABE33950.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
          Length = 790

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 88/178 (49%), Gaps = 12/178 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFG 147
           F+  ++++QL+  D L+GL N  +F+          +   ++S +F DID FK +ND FG
Sbjct: 202 FLLESQLAQLAATDPLTGLQNRRSFVKQAERRLDTLAPETRISAIFLDIDNFKSLNDRFG 261

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD  +  ++  L+        V R+GGEEF A  L      A  LA  LR  I   +
Sbjct: 262 HAVGDHALYEVAHALMEEASADDSVSRIGGEEF-ALLLCDGLTGALHLAERLRLAIAAIE 320

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                 P   +T S G+AE    E I  ++ RAD+AL  AK SGRNRV     +  + 
Sbjct: 321 R-----PDGQLTASFGVAEHRSGESIMMLLDRADEALLRAKHSGRNRVCAERPLPRDA 373


>gi|27383111|ref|NP_774640.1| hypothetical protein blr8000 [Bradyrhizobium japonicum USDA 110]
 gi|27356285|dbj|BAC53265.1| blr8000 [Bradyrhizobium japonicum USDA 110]
          Length = 865

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 64/189 (33%), Positives = 94/189 (49%), Gaps = 14/189 (7%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDY 138
           LG     +L  L  S  RI QL+  D +S L N         +L    E  ++ F D+D 
Sbjct: 398 LGLAFERMLTHLRASTQRIRQLAFYDTVSRLPNREKMRVDAPALIGAEEGAALFFLDLDG 457

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-----RLGGEEFAAAALGSSEQEAA 193
           FK IND FGH  GD+++  ++++L  +  T    G     R+GG+EF A   G    EAA
Sbjct: 458 FKSINDTFGHKAGDELLRMVAERLSNLLMTKGAAGKCLLARVGGDEFVAIIAGVKTVEAA 517

Query: 194 ILANDLRKIIENSQINI---SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
            L+   R++IE  Q++    S+  +I ++I   I    H      ++ RAD A+YVAK S
Sbjct: 518 SLS--AREMIETLQVSFKLQSNHATIGVSIGIAICP-THGTTYDDLLIRADLAMYVAKSS 574

Query: 251 GRNRVVCFS 259
           GRN    F+
Sbjct: 575 GRNTYAFFT 583


>gi|331652907|ref|ZP_08353912.1| putative GGDEF domain protein [Escherichia coli M718]
 gi|331049005|gb|EGI21077.1| putative GGDEF domain protein [Escherichia coli M718]
          Length = 298

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S            L ++  DID FK +ND +GH +GD V+  L
Sbjct: 131 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 190

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      ++++EA      + ++++N  I  S G  I+I
Sbjct: 191 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 249

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 250 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 293


>gi|114798852|ref|YP_760979.1| response regulator PleD [Hyphomonas neptunium ATCC 15444]
 gi|114739026|gb|ABI77151.1| response regulator PleD [Hyphomonas neptunium ATCC 15444]
          Length = 455

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 111/251 (44%), Gaps = 24/251 (9%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLE-------YILVENLSLVI 73
           SF P   + +F +       +VI I +    +       GLE        I ++   L  
Sbjct: 208 SFDPLKLIAHFKMNPVTRSISVILICDP---HDKAKALRGLEIGASDMITIPIDRQELAA 264

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYN 126
              T +    YI   IL++     +R  +LS ID L+GL N          F+      N
Sbjct: 265 RIRTQTRRTRYID--ILRQ---RVDRGLELSVIDQLTGLHNRRYMNGQLEQFMQRAARGN 319

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           + LS++  DID+FK +ND  GH  GD V+  +  +L         V R GGEEF      
Sbjct: 320 QPLSLMMTDIDHFKAVNDTHGHQAGDDVLREIGKRLRANVRPTDVVCRTGGEEFVVLMPN 379

Query: 187 SSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAE-RCHKEPISTIIYRADQAL 244
           +    A   A  +RK +   +  +  G  ++ IT+SAG++  +   +    +++RAD AL
Sbjct: 380 TPGDLACAAAERIRKAVAAEEFPVLGGSQNLRITVSAGVSTLQGAGDTTDDLMHRADTAL 439

Query: 245 YVAKKSGRNRV 255
           Y AK  GRNRV
Sbjct: 440 YQAKTGGRNRV 450


>gi|154174844|ref|YP_001408521.1| diguanylate cyclase [Campylobacter curvus 525.92]
 gi|112803042|gb|EAU00386.1| diguanylate cyclase [Campylobacter curvus 525.92]
          Length = 523

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 8/160 (5%)

Query: 104 SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S+ D L+ +    A +S +         Y    SI F DID+FK+IND +GH  GD +++
Sbjct: 360 SKEDFLTKVATKRALMSEIQKIEEAYKRYGTDYSICFVDIDFFKKINDTYGHEAGDVILS 419

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++  L        F+GR GGEEF      +S  +    A+ LR +IEN +  I    +I
Sbjct: 420 SVAQVLKKYARKIDFIGRYGGEEFVILLPSTSLNDGVKFADKLRLMIENFKF-IYKTETI 478

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            ++IS+G+A R      +  +  AD+ LY AK+ GRN+V+
Sbjct: 479 KVSISSGVATRSANLNDTMTLENADKMLYAAKQGGRNQVM 518


>gi|126090205|ref|YP_001041686.1| hypothetical protein Sbal_4568 [Shewanella baltica OS155]
 gi|126174498|ref|YP_001050647.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|125997703|gb|ABN61778.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|125999861|gb|ABN63931.1| hypothetical protein Sbal_4568 [Shewanella baltica OS155]
          Length = 325

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 10/162 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG----SYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
            L+  D L+G LN     + L      Y ++    S++  DID+FK +NDNFGH +GD++
Sbjct: 164 HLANTDELTGALNRKQLKTKLELSVYEYQQQQIPASLLLIDIDFFKMVNDNFGHIMGDQL 223

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   S  +         + R GGEEF      +  + AAI+A DLR+ IE     +   P
Sbjct: 224 LNKFSQHIQKKIRKDDLLFRFGGEEFLILLPNTQFESAAIVAEDLRRSIEEQHF-LDQHP 282

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              +T S G+A+    + + T +   D  LY AK +GRN VV
Sbjct: 283 --QVTCSIGVADLRQADTLDTWLKTCDNLLYTAKNAGRNCVV 322


>gi|330806679|ref|YP_004351141.1| diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327374787|gb|AEA66137.1| Putative diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 374

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 86/165 (52%), Gaps = 14/165 (8%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-YNE------KLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++ ++ D L+GL +  AF       YNE       L  V  D+D+FK IND +GH VGD+
Sbjct: 213 TRAAQTDELTGLKSRRAFFEHAQQLYNECKAKRQGLCAVMLDMDHFKHINDTYGHQVGDQ 272

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  +   +   F      GRLGGEEFA     +S + A  +A  L   I    I     
Sbjct: 273 VLRQMGTVISSSFRATDIHGRLGGEEFAILLPDTSIEVATQIAERLIDTIAGLTIE---- 328

Query: 214 PSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           P  HI+ S G+A  E C+K+ + +++  AD+ALY AK  GRNRV 
Sbjct: 329 PVHHISASLGVASTEACNKD-LHSLMNDADKALYRAKALGRNRVA 372


>gi|331642120|ref|ZP_08343255.1| putative GGDEF domain protein [Escherichia coli H736]
 gi|323942082|gb|EGB38259.1| GGDEF domain-containing protein [Escherichia coli E482]
 gi|323947870|gb|EGB43866.1| GGDEF domain-containing protein [Escherichia coli H120]
 gi|331038918|gb|EGI11138.1| putative GGDEF domain protein [Escherichia coli H736]
          Length = 298

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S            L ++  DID FK +ND +GH +GD V+  L
Sbjct: 131 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 190

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      ++++EA      + ++++N  I  S G  I+I
Sbjct: 191 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 249

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 250 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 293


>gi|285018815|ref|YP_003376526.1| sensor protein [Xanthomonas albilineans GPE PC73]
 gi|283474033|emb|CBA16534.1| hypothetical sensor protein [Xanthomonas albilineans]
          Length = 374

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 83/164 (50%), Gaps = 14/164 (8%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GLLN  A+ ++L    E        LS+   D+DYFK IND  GH  GD+V+ 
Sbjct: 218 ARTDPLTGLLNRRAYATALMVEVESAQVNAAALSVAILDLDYFKSINDLHGHDKGDEVLL 277

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            L+  L V       V R GGEEFA        ++A      LR+  E   + +     +
Sbjct: 278 ALAQMLRVHAPPDCLVARYGGEEFAILLPWMQTEQAVHTCEMLRE--ETGLLRL----GV 331

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +T S G+A     E    ++ RADQALY AK++GR+  VC ++
Sbjct: 332 PLTASIGVATLRAPESAEQLLKRADQALYQAKRAGRD-CVCLAE 374


>gi|157963010|ref|YP_001503044.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157848010|gb|ABV88509.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
          Length = 627

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 83/165 (50%), Gaps = 11/165 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           +S L+  D L+ L N     +   +Y E+       LS++ FDIDYFK IND FGH VGD
Sbjct: 462 LSALALTDDLTQLPNRRYIYAKAQTYFEQAQRTESPLSVITFDIDYFKLINDKFGHEVGD 521

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +  L+D    V  T     R+GGEEF      +   +   +A  L   +     + S 
Sbjct: 522 HALKLLADTCREVLATQYKTARIGGEEFLVILPDTDLAQGYKIAQALVHSVRYG--DFSQ 579

Query: 213 GPS-IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            PS   +TISAG+A        +S ++ +ADQALY+AK  GRN+ 
Sbjct: 580 LPSGFSMTISAGVASLSTADSKLSLLLKKADQALYIAKTEGRNQA 624


>gi|94499228|ref|ZP_01305766.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Oceanobacter sp. RED65]
 gi|94428860|gb|EAT13832.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Oceanobacter sp. RED65]
          Length = 375

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 11/175 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYF 139
           G   ++L  + ++I +L+  D L+GL N    +  L            + ++ F D+D+F
Sbjct: 181 GERHRQLKGAMSKIEELAITDELTGLYNRRHVMEILNQQRALANRSQYRFTVCFLDLDHF 240

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND +GHP GDKV+   +  +           R+GGEEF      + +++A  +   +
Sbjct: 241 KKVNDQYGHPFGDKVLKRFASLVRTSLREVDIGARIGGEEFILILADTCQEDAHEV---V 297

Query: 200 RKIIENSQINI-SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           R++ +  Q  +     S+ +T+SAGI E    E +  +I RAD+ LY AK+ GRN
Sbjct: 298 RRMAQRWQQTLFEPHESLVMTLSAGITEFHPPETLEAMIERADELLYEAKRDGRN 352


>gi|295798123|emb|CAX68956.1| two component sensor with CHASE2 and GGDEF domain [uncultured
           bacterium]
          Length = 559

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 128/268 (47%), Gaps = 38/268 (14%)

Query: 27  FMIYFSIFFSIF-----------IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIIS 75
           F+I F  FF I            + TVI +A I LF I    FY  +  L+ +++L+ I 
Sbjct: 285 FLISFMGFFIILSLALLVSAMFGVLTVILLA-IILFGIS---FYLFQQQLIFDITLMYIG 340

Query: 76  ITISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHS----AFISSLGSYN--- 126
           + ++L    I   I +E  LF+   R+ + S  D L+G  +         S +G  +   
Sbjct: 341 LVLTL----IGAVIYREGQLFLENLRLREESSRDPLTGFYSRRFMELKLKSEVGRLSRGF 396

Query: 127 ---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
              +++S++  D+D FK +ND+FGH  GD+V+  ++  +         + R GG+EF   
Sbjct: 397 HSAKEVSVIMIDLDNFKLVNDSFGHAEGDRVLKTMAQSIRNSVRKEEVICRFGGDEFCVI 456

Query: 184 ALGSSEQEAAILANDLRKIIEN----SQINISSGPSIHITISAGIAERCHKEPIST--II 237
              +  ++A   A  LR++I N    S        +I +T S G+A     + +    ++
Sbjct: 457 LPNTELKDATRFAEKLRQLIANNPDLSYRTAGGTDTIRVTGSIGVASVSGTKAMEPGGLL 516

Query: 238 YRADQALYVAKKSGRNRVVCFSDIENNT 265
             ADQALY AKK GRNR VC  D + +T
Sbjct: 517 KAADQALYRAKKGGRNR-VCVYDPKQDT 543


>gi|307725816|ref|YP_003909029.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1003]
 gi|307586341|gb|ADN59738.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1003]
          Length = 667

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 95/182 (52%), Gaps = 11/182 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYF 139
           SG+ + E  ++  R++QL+  D L+GL N +A    + S        E + ++F D+D F
Sbjct: 220 SGTDITEERLAQERLTQLANTDSLTGLANRNAIQDKIRSAIEEAAPGESVGVLFLDLDNF 279

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND++GH  GD++I  +S  +         + RLGG+EF   A   + QE    A   
Sbjct: 280 KKVNDHYGHVFGDRLIRDVSAAIGACLNEGDTLARLGGDEFIVLAAKGTAQELEATA--- 336

Query: 200 RKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++I+E  +   S G   ++   S GIA    H + + ++I  AD A+YVAK +G+     
Sbjct: 337 QRILERMRTPFSLGLVEVYTGCSIGIARYPEHGDNLESLIRSADTAMYVAKDAGKRTHRV 396

Query: 258 FS 259
           FS
Sbjct: 397 FS 398


>gi|83747622|ref|ZP_00944658.1| Hypothetical Protein RRSL_02307 [Ralstonia solanacearum UW551]
 gi|83725674|gb|EAP72816.1| Hypothetical Protein RRSL_02307 [Ralstonia solanacearum UW551]
          Length = 487

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 11/198 (5%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125
           LV++   ++L + Y+    L+       R ++L+  D L+GL N  A    L +      
Sbjct: 290 LVVLFNVVTLAMAYLFAQHLERRIEEQRRHAELAATDALTGLANRRALDERLDAEWRRAA 349

Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAA 182
              + LS++  D+D+FK  ND +GHP GD  +  ++  +      P     R GGEEF  
Sbjct: 350 RERQPLSVLMIDVDHFKAYNDQYGHPDGDVALQAVARCIQANLRRPGDLAARYGGEEFCV 409

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE---RCHKEPISTIIYR 239
              GS    A ++A  +R  I+   I  +   +  +T+S G A       ++  +T+   
Sbjct: 410 VLPGSDLGSANVVAETIRHAIQALDIPHARSDAAVLTVSIGAASGTPASGEQRTATLTKA 469

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD  LY AK SGRNR V 
Sbjct: 470 ADAQLYRAKTSGRNRTVA 487


>gi|53715877|ref|YP_106612.1| GGDEF domain-containing protein [Burkholderia mallei ATCC 23344]
 gi|53723359|ref|YP_112344.1| hypothetical protein BPSS2342 [Burkholderia pseudomallei K96243]
 gi|67639151|ref|ZP_00438046.1| diguanylate cyclase [Burkholderia mallei GB8 horse 4]
 gi|76817799|ref|YP_336650.1| GGDEF domain-containing protein [Burkholderia pseudomallei 1710b]
 gi|121597761|ref|YP_990732.1| diguanylate cyclase [Burkholderia mallei SAVP1]
 gi|124381784|ref|YP_001025215.1| diguanylate cyclase [Burkholderia mallei NCTC 10229]
 gi|126442656|ref|YP_001064270.1| diguanylate cyclase [Burkholderia pseudomallei 668]
 gi|126446548|ref|YP_001079570.1| diguanylate cyclase [Burkholderia mallei NCTC 10247]
 gi|126456856|ref|YP_001077194.1| diguanylate cyclase [Burkholderia pseudomallei 1106a]
 gi|134281915|ref|ZP_01768622.1| diguanylate cyclase [Burkholderia pseudomallei 305]
 gi|166998968|ref|ZP_02264818.1| diguanylate cyclase [Burkholderia mallei PRL-20]
 gi|167721876|ref|ZP_02405112.1| diguanylate cyclase [Burkholderia pseudomallei DM98]
 gi|167744411|ref|ZP_02417185.1| diguanylate cyclase [Burkholderia pseudomallei 14]
 gi|167821605|ref|ZP_02453285.1| diguanylate cyclase [Burkholderia pseudomallei 91]
 gi|167829949|ref|ZP_02461420.1| diguanylate cyclase [Burkholderia pseudomallei 9]
 gi|167851402|ref|ZP_02476910.1| diguanylate cyclase [Burkholderia pseudomallei B7210]
 gi|167900048|ref|ZP_02487449.1| diguanylate cyclase [Burkholderia pseudomallei 7894]
 gi|167924550|ref|ZP_02511641.1| diguanylate cyclase [Burkholderia pseudomallei BCC215]
 gi|226199207|ref|ZP_03794767.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9]
 gi|242312012|ref|ZP_04811029.1| diguanylate cyclase [Burkholderia pseudomallei 1106b]
 gi|254177165|ref|ZP_04883821.1| diguanylate cyclase [Burkholderia mallei ATCC 10399]
 gi|254182411|ref|ZP_04889005.1| diguanylate cyclase [Burkholderia pseudomallei 1655]
 gi|254186964|ref|ZP_04893479.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237]
 gi|254192528|ref|ZP_04898967.1| diguanylate cyclase [Burkholderia pseudomallei S13]
 gi|254203631|ref|ZP_04909992.1| diguanylate cyclase [Burkholderia mallei FMH]
 gi|254205499|ref|ZP_04911852.1| diguanylate cyclase [Burkholderia mallei JHU]
 gi|254263051|ref|ZP_04953916.1| diguanylate cyclase [Burkholderia pseudomallei 1710a]
 gi|254356215|ref|ZP_04972492.1| diguanylate cyclase [Burkholderia mallei 2002721280]
 gi|52213773|emb|CAH39828.1| hypothetical protein BPSS2342 [Burkholderia pseudomallei K96243]
 gi|52421847|gb|AAU45417.1| GGDEF domain protein [Burkholderia mallei ATCC 23344]
 gi|76582272|gb|ABA51746.1| GGDEF domain protein [Burkholderia pseudomallei 1710b]
 gi|121225559|gb|ABM49090.1| diguanylate cyclase [Burkholderia mallei SAVP1]
 gi|126222147|gb|ABN85652.1| diguanylate cyclase [Burkholderia pseudomallei 668]
 gi|126230624|gb|ABN94037.1| diguanylate cyclase [Burkholderia pseudomallei 1106a]
 gi|126239402|gb|ABO02514.1| diguanylate cyclase [Burkholderia mallei NCTC 10247]
 gi|134246977|gb|EBA47064.1| diguanylate cyclase [Burkholderia pseudomallei 305]
 gi|147745870|gb|EDK52949.1| diguanylate cyclase [Burkholderia mallei FMH]
 gi|147755085|gb|EDK62149.1| diguanylate cyclase [Burkholderia mallei JHU]
 gi|148025198|gb|EDK83367.1| diguanylate cyclase [Burkholderia mallei 2002721280]
 gi|157934647|gb|EDO90317.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237]
 gi|160698205|gb|EDP88175.1| diguanylate cyclase [Burkholderia mallei ATCC 10399]
 gi|169649286|gb|EDS81979.1| diguanylate cyclase [Burkholderia pseudomallei S13]
 gi|184212946|gb|EDU09989.1| diguanylate cyclase [Burkholderia pseudomallei 1655]
 gi|225928614|gb|EEH24641.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9]
 gi|238519695|gb|EEP83163.1| diguanylate cyclase [Burkholderia mallei GB8 horse 4]
 gi|242135251|gb|EES21654.1| diguanylate cyclase [Burkholderia pseudomallei 1106b]
 gi|243064789|gb|EES46975.1| diguanylate cyclase [Burkholderia mallei PRL-20]
 gi|254214053|gb|EET03438.1| diguanylate cyclase [Burkholderia pseudomallei 1710a]
 gi|261826501|gb|ABM99648.2| diguanylate cyclase [Burkholderia mallei NCTC 10229]
          Length = 311

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 87/168 (51%), Gaps = 9/168 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ + +  D L+G+ N   F        S    Y   LS++ FD+D+FK IND FGH VG
Sbjct: 144 KLQEYANRDGLTGIANRRFFEARLRDEFSRWQRYGGNLSVLLFDLDHFKTINDRFGHVVG 203

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++ ++  V  +    GR GGEEFA     +S  EA ++A  +R+ I ++ I  +
Sbjct: 204 DNVLRVMAQRVADVVRSQDTFGRFGGEEFALLLPCTSLDEAMLVAEKIRQTIGSTPIE-A 262

Query: 212 SGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCF 258
            G  + +T S G A          T++  AD ALY AK+ GRN  V F
Sbjct: 263 EGVRVPVTASVGGAAAHAGALTHETLVNEADAALYRAKRQGRNCSVAF 310


>gi|149912251|ref|ZP_01900827.1| probable GGDEF family regulatory protein [Moritella sp. PE36]
 gi|149804672|gb|EDM64726.1| probable GGDEF family regulatory protein [Moritella sp. PE36]
          Length = 331

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 25/177 (14%)

Query: 104 SRIDCLSGLLNHSAFISSL------GSYNEKLS---------IVFFDIDYFKQINDNFGH 148
           +R+D L+ LLN   F S L        +NE+           +   DID FKQ+ND FGH
Sbjct: 145 NRLDPLTELLNRQTFESKLMEVIAGHDHNERREQSDEHCAWYLGMLDIDNFKQVNDQFGH 204

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--- 205
            +GD+V+  ++  +   F +  ++ R GGEEF+     ++E  A ++   LR +I     
Sbjct: 205 VIGDEVLILIARLIKTNFRSQDYIFRYGGEEFSVLFKCAAEDIAVLILERLRGMIAQYIF 264

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            Q+         ITIS G  E      +ST++ +AD ALY +K++GRN+V  F  IE
Sbjct: 265 PQVGT-------ITISIGFTELESGRVLSTLVQQADVALYDSKRAGRNKVTNFKKIE 314


>gi|78486276|ref|YP_392201.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78364562|gb|ABB42527.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2]
          Length = 775

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 94/201 (46%), Gaps = 21/201 (10%)

Query: 70  SLVIISITISLLLGYIS------GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
            + I+   I LLLG  +          K+L  +  ++S LS  D L+G+ N       L 
Sbjct: 576 QMTIVLAPILLLLGVFAFFNRKLRQTQKKLQETNKQLSILSVTDHLTGVYNRQYLDQRLD 635

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
           S       Y    S++  D+D FK++ND FGH VGD+V+   +  +          GR G
Sbjct: 636 SEVERVNRYGSTFSVIMMDLDNFKKVNDKFGHLVGDEVLVVFAQTVEKEIRKIDIFGRWG 695

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPIS 234
           GEEF      +    A  L   +RK IE+     NIS       T+S G+AE    E I+
Sbjct: 696 GEEFILICPETPLTHAIQLGKKVRKSIESQDYPENISQ------TVSLGVAEYQTGEAIN 749

Query: 235 TIIYRADQALYVAKKSGRNRV 255
             + RADQ LY AK+ GRN+V
Sbjct: 750 DCLNRADQNLYKAKQLGRNQV 770


>gi|323498567|ref|ZP_08103560.1| hypothetical protein VISI1226_09849 [Vibrio sinaloensis DSM 21326]
 gi|323316456|gb|EGA69474.1| hypothetical protein VISI1226_09849 [Vibrio sinaloensis DSM 21326]
          Length = 597

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 86/160 (53%), Gaps = 4/160 (2%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +++L+R D L+G+LN  A ++    L   N    +   D+D FKQ+ND  GH +GD+++ 
Sbjct: 434 LTRLAREDSLTGVLNRRALVNGAEELRRLNASCCVCMMDLDDFKQVNDICGHAIGDEILI 493

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPS 215
                +     +   +GRLGGEEFA     +S  +A  +A  +R  +E+     + S  +
Sbjct: 494 AFCQAVNCEIRSSDVLGRLGGEEFALLLPETSLDDALQIAERIRLRVEHELAGKLCSSHA 553

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +T+S G+ +    +P +  + +AD  LY AK +GRN++
Sbjct: 554 RPVTVSMGLVDWPKDQPFAQALIKADNCLYQAKHNGRNQI 593


>gi|290510614|ref|ZP_06549984.1| membrane-associated diguanylate cyclase [Klebsiella sp. 1_1_55]
 gi|289777330|gb|EFD85328.1| membrane-associated diguanylate cyclase [Klebsiella sp. 1_1_55]
          Length = 379

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 89/162 (54%), Gaps = 5/162 (3%)

Query: 98  NRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            R+  ++  D L+G  N    +AF++ L      L+++  D+DYFK+ ND++GH  GD  
Sbjct: 215 QRLESIANRDALTGTANRRALNAFLAQLWEQKAPLALIMIDVDYFKRYNDHYGHQAGDDC 274

Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212
           ++ ++  L + V      V R GGEEF  A  G S   A ++A  +++ I ++ + + +S
Sbjct: 275 LSSVAQVLKMAVRAEDDLVARYGGEEFVVALPGVSLAHATVIAERIQQKIHDAALPHEAS 334

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +  +T+S G+       P+ T+I RAD ALY AK  GRN+
Sbjct: 335 AVAAVVTVSMGVVASDGTVPMETLIARADSALYQAKNKGRNQ 376


>gi|254489862|ref|ZP_05103057.1| GGDEF domain protein [Methylophaga thiooxidans DMS010]
 gi|224464947|gb|EEF81201.1| GGDEF domain protein [Methylophaga thiooxydans DMS010]
          Length = 317

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 94/172 (54%), Gaps = 10/172 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+G+LN  A  +S            + +SI   DID+FK+IND FGH  GD
Sbjct: 135 LEKLAYYDELTGVLNRRAGNASFQVEMDRAIRKEQNVSIAMVDIDHFKKINDAFGHQTGD 194

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+   S  L         V R GGEEF   A  +++ EA+ L   +R+ +  +QI   +
Sbjct: 195 EVLRVFSRVLRQTMRPYDIVCRYGGEEFMLIAEINNKDEASDLFERVRETVSTTQIR-HA 253

Query: 213 GPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             +I+IT S G+     +    + +++ +AD+ALY AK +GRN+V+  +D++
Sbjct: 254 NQTINITASFGVHVVIPRTDMILKSLVQKADEALYEAKSAGRNKVIISADLD 305


>gi|209695594|ref|YP_002263523.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238]
 gi|208009546|emb|CAQ79838.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238]
          Length = 490

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 84/165 (50%), Gaps = 7/165 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGD 152
           +S N    L++ D ++GL N   F  SL     K  + F  +DID FKQIND FGH VGD
Sbjct: 326 LSQNYYRDLAKQDPMTGLYNRRGFEMSLQDRVVKKFVGFAIYDIDDFKQINDVFGHDVGD 385

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + I +++  L         V R GGEEF       S +    +   +RK I++S   I S
Sbjct: 386 EAIKYVARMLTKSVRDSDIVSRFGGEEFVICINADSRETLENVCERVRKSIQDSSGKIVS 445

Query: 213 GPSIHITISAGIA-ERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
           G     T+S G++    H++     II +AD  LY AK+ G+NRV
Sbjct: 446 GG---FTVSGGVSIIDSHQDFSFEHIIKKADDLLYKAKEDGKNRV 487


>gi|207739701|ref|YP_002258094.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           IPO1609]
 gi|206593083|emb|CAQ59989.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           IPO1609]
          Length = 460

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 11/198 (5%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125
           LV++   ++L + Y+    L+       R ++L+  D L+GL N  A    L +      
Sbjct: 263 LVVLFNVVTLAMAYLFAQHLERRIEEQRRHAELAATDALTGLANRRALDERLDAEWRRAA 322

Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAA 182
              + LS++  D+D+FK  ND +GHP GD  +  ++  +      P     R GGEEF  
Sbjct: 323 RERQPLSVLMIDVDHFKAYNDQYGHPDGDVALQAVARCIQANLRRPGDLAARYGGEEFCV 382

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE---RCHKEPISTIIYR 239
              GS    A ++A  +R  I+   I  +   +  +T+S G A       ++  +T+   
Sbjct: 383 VLPGSDLGSANVVAETIRHAIQALDIPHARSDAAVLTVSIGAASGTPASGEQRTATLTKA 442

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD  LY AK SGRNR V 
Sbjct: 443 ADAQLYRAKTSGRNRTVA 460


>gi|167566764|ref|ZP_02359680.1| two component system fusin protein [Burkholderia oklahomensis
           EO147]
          Length = 491

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +L+R D L+GL N  AF  +L          +  LS++F DID FK  ND +GH  G
Sbjct: 319 RLQRLARTDALTGLGNRRAFDENLRREWARALRSSRPLSLLFVDIDQFKNYNDCYGHQAG 378

Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D V+  ++  L + V      V R GGEEF      +  + A+ +A  LR+ + +  I  
Sbjct: 379 DDVLREVARCLALNVRRAADDVSRYGGEEFVITLPDTDAKSASAIAEHLRRAVYDLDIEH 438

Query: 211 SSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNRV 255
              P   +T+S G+    H   +   + ++  AD ALY AK +GRNRV
Sbjct: 439 EKSPYRRVTVSIGLVT-SHDNAMHSDTALVKMADAALYQAKSTGRNRV 485


>gi|313108490|ref|ZP_07794494.1| putative sensory box/GGDEF domain-containing protein [Pseudomonas
           aeruginosa 39016]
 gi|310880996|gb|EFQ39590.1| putative sensory box/GGDEF domain-containing protein [Pseudomonas
           aeruginosa 39016]
          Length = 307

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 8/158 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G  N  A   +LG   E        LS++  DID+FK++ND++GH VGD+ +  ++
Sbjct: 150 DALTGTGNRIAMDQALGRELELARRNLQPLSVLMLDIDHFKRVNDHYGHTVGDEALKAVA 209

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + +         V R GGEEF      +  Q A ++   LR+ +E       +G  + ++
Sbjct: 210 ETIKDHLRNVDMVFRFGGEEFLVLLSSTPLQAACMVGERLRQAVEELDYR-HAGEPLKLS 268

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IS G A+    E    ++ R D+ALY AK+ GRNR+ C
Sbjct: 269 ISLGCADLRPGEGSDDLLRRVDEALYEAKRDGRNRLRC 306


>gi|303246207|ref|ZP_07332488.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
 gi|302492603|gb|EFL52474.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
          Length = 427

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 79/157 (50%), Gaps = 11/157 (7%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N +    +L     +       L ++ FDID+FK +ND+ GH  GD V+A L+
Sbjct: 274 DALTGIANRAGIDEALARERNRAARNAKPLCVIMFDIDHFKDVNDSLGHQAGDAVLAALT 333

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +  +      +GR GGEEF   A  +  ++  +LA  LR  +E      +      +T
Sbjct: 334 GLVSGLVRGHDILGRYGGEEFLVVAPETDMEQGRLLAERLRAAVEAHAFPAAG----KVT 389

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S G+A     E    ++ RAD ALY AK++GRNRV 
Sbjct: 390 CSFGLAMLDADESAHALVARADAALYRAKETGRNRVA 426


>gi|300940085|ref|ZP_07154694.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
 gi|300455097|gb|EFK18590.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
          Length = 296

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNH----SAFISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        +F   L + +   L ++  DID FK +ND +GH +GD V+  L
Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNADPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      ++++EA      + ++++N  I  S G  I+I
Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGIRICQLVDNHAITHSEG-HINI 247

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 248 TVTAGVSRAFSEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291


>gi|256829500|ref|YP_003158228.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
 gi|256578676|gb|ACU89812.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
          Length = 483

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 73/141 (51%), Gaps = 4/141 (2%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           + ++LS++  D+DYFK IND +GH  GD V+  +   L        F  R GGEEF    
Sbjct: 340 HQDELSLMMIDLDYFKSINDTYGHQAGDMVLQEVGKILNNTLRESDFPARYGGEEFVVIL 399

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQ 242
             + E +A ILA  LR  I  +    S      +T S GIA  + C   P  T++  AD 
Sbjct: 400 PQTREDQAWILAERLRSQIGQTFFR-SQKKRFRVTASIGIAGIKPCALTPPETLLRNADT 458

Query: 243 ALYVAKKSGRNRVVCFSDIEN 263
           ALY AK +GRN +VC S IE 
Sbjct: 459 ALYQAKTNGRN-MVCCSAIEE 478


>gi|157961509|ref|YP_001501543.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella pealeana ATCC 700345]
 gi|157846509|gb|ABV87008.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella pealeana ATCC 700345]
          Length = 400

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 83/150 (55%), Gaps = 8/150 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ + + +D L+ + N   F       ++ +      LS+   DID+FK++ND++GH VG
Sbjct: 248 RLWEQANLDYLTNVYNRRYFFNLYQEKLTEIAQKQGTLSLALLDIDFFKKVNDSYGHDVG 307

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+   S++L   F     V R+GGEEF     G + ++A  L +  R  +E + I  S
Sbjct: 308 DEVLIEFSNRLQQSFSQHFNVARIGGEEFVVGFKGLNVEKAYALLDSFRMQLEANPIETS 367

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRAD 241
            G  ++I++S+G+AE  H E +  ++ RAD
Sbjct: 368 KG-MLNISVSSGVAEFTHTENVDELLNRAD 396


>gi|254786722|ref|YP_003074151.1| GGDEF domain-containing protein [Teredinibacter turnerae T7901]
 gi|237686025|gb|ACR13289.1| GGDEF domain protein [Teredinibacter turnerae T7901]
          Length = 566

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 8/172 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQIN 143
           K L  +  ++  ++  D L+ L     F   L      + NE+  L+++  DID FK IN
Sbjct: 392 KSLEEASRKLFTIATTDHLTQLATRGYFFQRLNEEINRALNEQSSLALLELDIDNFKNIN 451

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+FGHP GD VI  ++        +   +GR+GGEEFA      ++  A  +AN LR+  
Sbjct: 452 DSFGHPAGDAVIQHMAAICRECVRSNDIIGRIGGEEFAIGLPNCTKSAALEIANTLRRRC 511

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            N  +   S  +I  T S G+     ++ I  ++   D+ALY AKK+GRNRV
Sbjct: 512 ANEGLTYGS-KTIRFTCSIGVTLLNGRDNIQDLLGVVDKALYAAKKAGRNRV 562


>gi|254457171|ref|ZP_05070599.1| response regulator [Campylobacterales bacterium GD 1]
 gi|207085963|gb|EDZ63247.1| response regulator [Campylobacterales bacterium GD 1]
          Length = 683

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 95/171 (55%), Gaps = 11/171 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+  LS  D L+GLLN +  I        S   ++ K+ ++F D+D FK++ND  GH  G
Sbjct: 512 RLEHLSMTDKLTGLLNRNGLIENFEIFQKSAQRFDRKMGLMFIDLDGFKKVNDTLGHAAG 571

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  +SD+L  +  +     R+GG+EF         ++   L++  ++I+++  I +S
Sbjct: 572 DEVLIIISDRLQSMSRSNEIAVRIGGDEF--VIFIPEYEDIDELSSLSQRILDSFSIPLS 629

Query: 212 -SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                + I +S GIA   ++E +  I+ RAD+A+Y  KKSG++    F+DI
Sbjct: 630 IKDGEVSIGMSIGIATADNRETLDEILSRADEAMYKVKKSGKDG-YAFADI 679


>gi|116252627|ref|YP_768465.1| GGDEF domain-containing protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115257275|emb|CAK08370.1| putative GGDEF domain and response regulator two component
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 443

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 91/177 (51%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKL------SIVFFDIDYFKQIND 144
           E      ++   +  D L+GL N   F  +     NE L      S+   DID+FK++ND
Sbjct: 261 ETLAQMRQLRAAAACDYLTGLYNRRYFYDNGPKLVNECLRLKVPSSVAILDIDHFKRLND 320

Query: 145 NFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH +GDKV+  ++++L  +F G+   + RLGGEEFA          A  L +++R  I
Sbjct: 321 TYGHEIGDKVLKAVANRLFTIFEGSDNLLSRLGGEEFAILFPQMDSAAATKLCDEIRSDI 380

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              ++  +    + +TIS GIAE    E     +  ADQ LY+AK  GRN+V  +SD
Sbjct: 381 SRLKVT-ADDEELGVTISIGIAEIAGYETFENYLNAADQFLYMAKHRGRNQV--YSD 434


>gi|91210783|ref|YP_540769.1| hypothetical protein UTI89_C1760 [Escherichia coli UTI89]
 gi|117623760|ref|YP_852673.1| hypothetical protein APECO1_658 [Escherichia coli APEC O1]
 gi|237705511|ref|ZP_04535992.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91072357|gb|ABE07238.1| hypothetical protein YdeH [Escherichia coli UTI89]
 gi|115512884|gb|ABJ00959.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|226900268|gb|EEH86527.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|323956736|gb|EGB52471.1| GGDEF domain-containing protein [Escherichia coli H263]
          Length = 298

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 2/135 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L ++  DID FK +ND +GH +GD V+  L+  L         V R GGEEF      ++
Sbjct: 161 LYLMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVYRYGGEEFIIIVKATN 220

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           ++EA      + ++++N  I  S G  I+IT++AG++    +EP+  +I RAD+A+Y  K
Sbjct: 221 DEEACRAGVRICQLVDNHAITHSEG-HINITVTAGVSRAFPEEPLDVVIGRADRAMYEGK 279

Query: 249 KSGRNRVVCFSDIEN 263
           ++GRNR + F D +N
Sbjct: 280 QTGRNRCM-FIDEQN 293


>gi|26247818|ref|NP_753858.1| hypothetical protein c1963 [Escherichia coli CFT073]
 gi|26108220|gb|AAN80420.1|AE016760_279 Hypothetical protein ydeH [Escherichia coli CFT073]
          Length = 298

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 2/135 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L ++  DID FK +ND +GH +GD V+  L+  L         V R GGEEF      ++
Sbjct: 161 LYLMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVYRYGGEEFIIIVKATN 220

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           ++EA      + ++++N  I  S G  I+IT++AG++    +EP+  +I RAD+A+Y  K
Sbjct: 221 DEEACRAGVRICQLVDNHAITHSEG-HINITVTAGVSRAFPEEPLDVVIGRADRAMYEGK 279

Query: 249 KSGRNRVVCFSDIEN 263
           ++GRNR + F D +N
Sbjct: 280 QTGRNRCM-FIDEQN 293


>gi|224372548|ref|YP_002606920.1| diguanylate cyclase [Nautilia profundicola AmH]
 gi|223589976|gb|ACM93712.1| diguanylate cyclase [Nautilia profundicola AmH]
          Length = 400

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 12/162 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++ +  +ID L+G  N      SL +    NEK SIV  DID+FK+IND +GH +GD+++
Sbjct: 247 KVKRQLQIDPLTGAYNRMFLEGSLENIFNINEKKSIVMIDIDHFKKINDTYGHQIGDEIL 306

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
               + +         + R GGEEF      ++++EA I+   +RK       N+     
Sbjct: 307 IHFVNTIKNTIRKSDLLIRYGGEEFMLYMPDTTKEEAMIVMYKIRK-------NLRPCNG 359

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I  + SAGIA+    E ++ ++  AD+ LY AK  GRN+++ 
Sbjct: 360 IKYSFSAGIADEG--ETLAEMVKIADRRLYKAKYEGRNKIIA 399


>gi|215486748|ref|YP_002329179.1| hypothetical protein E2348C_1656 [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312966672|ref|ZP_07780892.1| uncharacterized protein ydeH [Escherichia coli 2362-75]
 gi|215264820|emb|CAS09204.1| predicted protein [Escherichia coli O127:H6 str. E2348/69]
 gi|281178642|dbj|BAI54972.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|312288782|gb|EFR16682.1| uncharacterized protein ydeH [Escherichia coli 2362-75]
 gi|330911378|gb|EGH39888.1| hypothetical protein ECAA86_01735 [Escherichia coli AA86]
          Length = 296

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S            L ++  DID FK +ND +GH +GD V+  L
Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      ++++EA      + ++++N  I  S G  I+I
Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKATNDEEACRAGVRICQLVDNHAITHSEG-HINI 247

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291


>gi|152990443|ref|YP_001356165.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
 gi|151422304|dbj|BAF69808.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
          Length = 483

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 82/168 (48%), Gaps = 8/168 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFG 147
           LK+  I  + +   +  D L+ L N  A  S L +   N +  I+F DID+FK  ND +G
Sbjct: 319 LKQSHIYIDTLKDAALKDSLTHLFNRRALKSFLKTLKPNSRFGIIFCDIDHFKNFNDRYG 378

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+V+  ++  L        F+ R GGEEF       S ++    A  +R+ IEN  
Sbjct: 379 HDKGDEVLQEVAKTLSKFVRKDDFLARWGGEEFLIVLPNISLEDLKNRAEKMRQAIENIS 438

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +I    S  +T+    +       I   I RAD+ALY AK+ GRNRV
Sbjct: 439 KDIPVTCSFGVTVCEDASH------IDECIKRADEALYRAKEKGRNRV 480


>gi|114566146|ref|YP_753300.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114337081|gb|ABI67929.1| response regulator receiver modulated diguanylate cyclase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 301

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 10/158 (6%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ NH+  ++ L          N  L+++  D+D+FK++ND +GH  GD V+  ++
Sbjct: 142 DLLTGIFNHAKILNILEKELYRAKRQNSNLAVIMGDLDHFKKVNDTYGHMAGDAVLVEVA 201

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            ++         + R GGEEF     G S +EA I+AN +   I    +  +S P I +T
Sbjct: 202 LRMKNTIRLYDSICRYGGEEFLLVLPGCSTEEAIIIANRILGSISQEPVVFNSTP-IAVT 260

Query: 220 ISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRV 255
           IS G+A +    K   + ++  AD ALY AK++GRNRV
Sbjct: 261 ISLGVAMKAAGDKTTAAELVQLADAALYKAKQNGRNRV 298


>gi|254458947|ref|ZP_05072370.1| response regulator PleD [Campylobacterales bacterium GD 1]
 gi|207084218|gb|EDZ61507.1| response regulator PleD [Campylobacterales bacterium GD 1]
          Length = 424

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 79/157 (50%), Gaps = 11/157 (7%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+ + N + F       I     Y E LS+V  DIDYFK IND +GH VGD +++ L
Sbjct: 269 IDELTNIANRAKFNQILDIEIKKFKRYKENLSLVMLDIDYFKSINDTYGHQVGDIILSSL 328

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           S+ +           R GGEEF      +  Q A   A  +R+ I+          +++I
Sbjct: 329 SNLISSNIRDVDLFARWGGEEFVILLPNTDLQSAISFAEHIREYIQEYHFT----NNLNI 384

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T S GI+E   K+    ++ R D ALY AK+ GRNRV
Sbjct: 385 TCSFGISEINEKDTGENLLKRVDDALYRAKRMGRNRV 421


>gi|88608688|ref|YP_506396.1| response regulator PleD [Neorickettsia sennetsu str. Miyayama]
 gi|88600857|gb|ABD46325.1| response regulator/GGDEF domain protein [Neorickettsia sennetsu
           str. Miyayama]
          Length = 456

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 9/164 (5%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSL-GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +++ ID L+ L N   F       +++L  S N+  S++  DIDYFK+IND  GH  GD 
Sbjct: 287 KMAVIDPLTSLYNRYYFEKYMDELLATLTKSQNKTFSLMMIDIDYFKKINDVCGHLSGDL 346

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISS 212
           V+  L+  L         V + GGEE     +    ++A   A  +RK +E ++ + I+ 
Sbjct: 347 VLKQLAACLKGCLRLNDLVAKFGGEEIVVVLVDVGLEDAFDTAERIRKTVEKTEFSTIND 406

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              + +T+S G++E   ++   T+I RAD  LY+AK+ GRNRVV
Sbjct: 407 EVKVPLTVSIGVSEYQPQDTTKTLIGRADANLYIAKEKGRNRVV 450


>gi|109898237|ref|YP_661492.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109700518|gb|ABG40438.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
          Length = 346

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 9/170 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF------ISSLGS-YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D L+GL N          +S+L + +N  L++V FD+D FK IND  GH VG
Sbjct: 174 RLLSLAGTDPLTGLANRMKLNEGFQQLSALATRHNTPLTVVLFDLDLFKTINDVHGHSVG 233

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D  +  ++  L         + R GGEEFA   + +  ++     ++LRK + ++  + +
Sbjct: 234 DDALRHVATFLRKNTRKTDLLARFGGEEFALIMVATPIEKGFTQVDELRKKLMSTPFS-T 292

Query: 212 SGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +   I IT+SAG++      E ++ ++ +AD+ LY AK++GRN+V+   D
Sbjct: 293 TKCDIKITLSAGLSTYGADGEDLNQLLNKADRRLYYAKENGRNQVIAHDD 342


>gi|288940345|ref|YP_003442585.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
 gi|288895717|gb|ADC61553.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
          Length = 499

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 86/175 (49%), Gaps = 11/175 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL    + +   S  D L+GL N       L         Y   L+++ FD+D FK+I
Sbjct: 307 ISELKAIQDELRAASFTDPLTGLYNRRYLYQRLAHEIDLANRYKHPLAVILFDLDLFKRI 366

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH VGD V+  +S  L          GR GGEEF      +   EA  +A  +R  
Sbjct: 367 NDTFGHGVGDDVLVCVSGTLKSCIREVDVAGRHGGEEFLVILPHADLTEATEVAERIRAS 426

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  +QI+ S    +  TIS G+A+ C  E +   +  AD+ LY+AK SGRNR++ 
Sbjct: 427 V--AQISWSV-EGLAATISGGVAQHC-GESLDAFLDVADRRLYMAKDSGRNRILA 477


>gi|225872196|ref|YP_002753651.1| sensory box-containing diguanylate cyclase [Acidobacterium
           capsulatum ATCC 51196]
 gi|225792180|gb|ACO32270.1| sensory box-containing diguanylate cyclase [Acidobacterium
           capsulatum ATCC 51196]
          Length = 627

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 90/180 (50%), Gaps = 10/180 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           + +  +Y  +  L+ ID L+G+ N   F   L +  ++        +++  D+D+FK  N
Sbjct: 432 ERMQTAYLELQALAEIDALTGVANRRHFDKVLDAEWKRAIRTGAPTALLLIDVDWFKNYN 491

Query: 144 DNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD  +  ++  + V +  +   V R GGEEFA     + E  AA L   +R+ 
Sbjct: 492 DIYGHLEGDVCLRSIATWISVCIHRSTDLVARFGGEEFALILPDTDEAGAAALGERIREE 551

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSD 260
           IE  ++        HITISAG A        S   +I  AD+ALY AK SGRNRV+  SD
Sbjct: 552 IEARKVVHRGNEYGHITISAGCASLMPMRGTSGTLLIDAADKALYRAKSSGRNRVMRASD 611


>gi|82776861|ref|YP_403210.1| hypothetical protein SDY_1590 [Shigella dysenteriae Sd197]
 gi|309788737|ref|ZP_07683333.1| uncharacterized protein ydeH [Shigella dysenteriae 1617]
 gi|81241009|gb|ABB61719.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|308923371|gb|EFP68882.1| uncharacterized protein ydeH [Shigella dysenteriae 1617]
          Length = 296

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S            L ++  DID FK +ND +GH +GD V+  L
Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      ++++EA      + ++++N  I+ S G  I+I
Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAISHSEG-HINI 247

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291


>gi|325272232|ref|ZP_08138652.1| diguanylate cyclase [Pseudomonas sp. TJI-51]
 gi|324102638|gb|EGC00065.1| diguanylate cyclase [Pseudomonas sp. TJI-51]
          Length = 473

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 87/170 (51%), Gaps = 20/170 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE--------KLSIVFFDIDYFKQINDNFGHPV 150
           R++  + ID L+G L+ SAF     +  +         L+++  DID+FK IND  GH V
Sbjct: 297 RLAHQATIDHLTGALSRSAFTRRANALLDSRQHAQALPLTLMMLDIDHFKSINDAHGHAV 356

Query: 151 GDKVI----AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GD+V+      L DQL       +F  RLGGEEF     G + + A   A  LR+ +++ 
Sbjct: 357 GDQVLRQFAGALQDQL---HNNELF-ARLGGEEFVVVMPGLAPERATFTAERLRRAVQDL 412

Query: 207 QINISSGPSIHITISAGIA--ERCHKEP-ISTIIYRADQALYVAKKSGRN 253
            + +     + IT+S G+A  E     P +  ++  ADQALY AK  GRN
Sbjct: 413 HV-VQDDKCLQITVSIGVAGCEAHMPSPSLDLLLASADQALYRAKAHGRN 461


>gi|307721441|ref|YP_003892581.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
 gi|306979534|gb|ADN09569.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
          Length = 615

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 8/169 (4%)

Query: 99  RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++   S  D ++GL N          F S     N   S++  D+D+FK++ND +GH +G
Sbjct: 437 KLRDTSLRDAMTGLYNRRFLEEFIDTFASQAKRENTTYSVMMLDVDFFKKVNDTYGHDIG 496

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DKVIA + + L           R GGEEF      ++++    +A+ +         ++ 
Sbjct: 497 DKVIAKIGEVLHNSIRESDLAIRYGGEEFVVLLHNATDEGTQKIASKIHSEFAKLTFDVG 556

Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +G +I  T+S GIA+     + I   I  AD ALYVAK +GRN++V ++
Sbjct: 557 NGKTIQKTMSIGIAKFPRDGDSIWKCIKYADTALYVAKTTGRNKIVEYT 605


>gi|293414888|ref|ZP_06657531.1| ydeH protein [Escherichia coli B185]
 gi|291432536|gb|EFF05515.1| ydeH protein [Escherichia coli B185]
          Length = 296

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S            L ++  DID FK +ND +GH +GD V+  L
Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      ++++EA      + ++++N  I+ S G  I+I
Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAISHSEG-HINI 247

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291


>gi|262044987|ref|ZP_06018029.1| membrane-associated diguanylate cyclase [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|330006974|ref|ZP_08305822.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
 gi|259037714|gb|EEW38943.1| membrane-associated diguanylate cyclase [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|328535592|gb|EGF62046.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
          Length = 269

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 121/264 (45%), Gaps = 22/264 (8%)

Query: 11  IWLCH--EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           +W  H   K +    PH   +  ++   +FI T+ F  NI  F +   P +    I+ E 
Sbjct: 2   LWAWHVVTKAMLLTPPHFNYLVIALLSILFIGTIAFSNNITAFTLHSLPTFLACLIMAEG 61

Query: 69  ---------LSLVIISITISLLLGYISGS----ILKELFISYNRISQLSRIDCLSGLLNH 115
                      L I  IT+  ++   S +    ++ +L    N ++ LS +D L+GL N 
Sbjct: 62  EQWLRMTYCFMLPIAGITLQNIIQKRSDAFTQGLMDKLMHERNTLNDLSMLDPLTGLYNR 121

Query: 116 SAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
               + L +      +   ++  DID+FK  ND++GH +GD+ +  +S  +     +   
Sbjct: 122 RGLQNRLDTLLALDGDNHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRNAVRSRDI 181

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN--ISSGPSIHITISAGIAERCH 229
           V R GGEEF      SSE+ A   A  +R+ + + +I    +   + ++TIS G+    +
Sbjct: 182 VARFGGEEFMVLLTNSSEETAWKTAERIRQRVYDLKIPHMFNESVATNVTISIGLTPLIN 241

Query: 230 KEPISTIIYRADQALYVAKKSGRN 253
            + I   + RAD ALY AK  GRN
Sbjct: 242 -DNIEQALARADGALYEAKNKGRN 264


>gi|157962568|ref|YP_001502602.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157847568|gb|ABV88067.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
          Length = 261

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 125/270 (46%), Gaps = 30/270 (11%)

Query: 3   RSLKDFLSIWLCHE-KNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL 61
           RS + +L   + H  +NL        +   S+ FS+FI  + F     L   G    Y +
Sbjct: 6   RSARRYLVQRMRHIIQNLGRLKVVLLITALSVSFSVFITFLAF----SLRQTG--AVYNI 59

Query: 62  EYILVENLSLVIISIT----ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
            + L   + L I  I     ISLL+     S+ KE+ +       L+ +D L+ LLN  A
Sbjct: 60  AFFLATFIPLTIAPIVSWPLISLLMKV--DSLEKEMRL-------LASLDPLTELLNRRA 110

Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           F      Y  +       LS++  D+D FK IND +GH  GD V+   S  +     T  
Sbjct: 111 FFRDAELYIHRAKQEGRMLSVIALDLDKFKAINDCYGHSAGDAVLRHFSTTIRANCRTSD 170

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            +GRLGGEEFA     +S   A  LA  L + +  + I      ++  T+S G+     +
Sbjct: 171 LMGRLGGEEFALLLPNTSASAAYALAERLHQALRLTAIQYGHS-TMRYTVSIGVISVVPQ 229

Query: 231 EP--ISTIIYRADQALYVAKKSGRNRVVCF 258
           +   I  ++ +AD++LY+AK++GRN  V F
Sbjct: 230 KTDNIEALLNKADRSLYLAKETGRNCTVVF 259


>gi|49083990|gb|AAT51164.1| PA3177 [synthetic construct]
          Length = 308

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 8/158 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G  N  A   +LG   E        LS++  DID+FK++ND++GH VGD+ +  ++
Sbjct: 150 DALTGTGNRIAMDQALGRELELARRNLQPLSVLMLDIDHFKRVNDHYGHAVGDEALKAVA 209

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + +         V R GGEEF      +  Q A ++   LR+ +E       +G  + ++
Sbjct: 210 ETIKDHLRNVDMVFRFGGEEFLVLLSSTPLQAACMVGERLRQAVEELDYR-HAGEPLKLS 268

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IS G A+    E    ++ R D+ALY AK+ GRNR+ C
Sbjct: 269 ISLGCADLRPGEGSDDLLRRVDEALYEAKRDGRNRLRC 306


>gi|15598373|ref|NP_251867.1| hypothetical protein PA3177 [Pseudomonas aeruginosa PAO1]
 gi|107102707|ref|ZP_01366625.1| hypothetical protein PaerPA_01003773 [Pseudomonas aeruginosa PACS2]
 gi|116051166|ref|YP_790003.1| sensory box GGDEF domain-containing protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218890631|ref|YP_002439495.1| putative sensory box/GGDEF domain protein [Pseudomonas aeruginosa
           LESB58]
 gi|254236139|ref|ZP_04929462.1| hypothetical protein PACG_02103 [Pseudomonas aeruginosa C3719]
 gi|254241864|ref|ZP_04935186.1| hypothetical protein PA2G_02585 [Pseudomonas aeruginosa 2192]
 gi|9949295|gb|AAG06565.1|AE004742_1 hypothetical protein PA3177 [Pseudomonas aeruginosa PAO1]
 gi|115586387|gb|ABJ12402.1| putative sensory box/GGDEF domain protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126168070|gb|EAZ53581.1| hypothetical protein PACG_02103 [Pseudomonas aeruginosa C3719]
 gi|126195242|gb|EAZ59305.1| hypothetical protein PA2G_02585 [Pseudomonas aeruginosa 2192]
 gi|218770854|emb|CAW26619.1| putative sensory box/GGDEF domain protein [Pseudomonas aeruginosa
           LESB58]
          Length = 307

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 8/158 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G  N  A   +LG   E        LS++  DID+FK++ND++GH VGD+ +  ++
Sbjct: 150 DALTGTGNRIAMDQALGRELELARRNLQPLSVLMLDIDHFKRVNDHYGHAVGDEALKAVA 209

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + +         V R GGEEF      +  Q A ++   LR+ +E       +G  + ++
Sbjct: 210 ETIKDHLRNVDMVFRFGGEEFLVLLSSTPLQAACMVGERLRQAVEELDYR-HAGEPLKLS 268

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IS G A+    E    ++ R D+ALY AK+ GRNR+ C
Sbjct: 269 ISLGCADLRPGEGSDDLLRRVDEALYEAKRDGRNRLRC 306


>gi|300313032|ref|YP_003777124.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1]
 gi|300075817|gb|ADJ65216.1| GGDEF domain containing protein [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 89/179 (49%), Gaps = 11/179 (6%)

Query: 86  SGSILKELFISYNRISQLS-------RIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDI 136
           S    +EL     R+ QLS       R D L+G LN  A         +K  +S+V  DI
Sbjct: 56  SDRTERELNQLNARLQQLSDELDYKARHDNLTGALNRGAVFERAHQVLQKSPMSLVVLDI 115

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND FGHP GD VI  L  +L         +GR+GGEEF     G + + A +LA
Sbjct: 116 DFFKRINDEFGHPTGDAVIRELVARLRTTVDGVGVIGRVGGEEFTILLPGMALEPAVVLA 175

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +R+ I   +      P+  +T S G+A             RADQALY AK+SGRNRV
Sbjct: 176 GRIRQAIAGERFGCL--PARPVTSSFGVAWATAGSDFEQAYARADQALYQAKRSGRNRV 232


>gi|237755618|ref|ZP_04584232.1| ggdef domain protein [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692213|gb|EEP61207.1| ggdef domain protein [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 411

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 101/202 (50%), Gaps = 20/202 (9%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y ++ N+  ++I I    L  Y++   +K         S++S ID L+G  N  +F + +
Sbjct: 223 YFMILNIQNIVIWIGNEFL--YLNTKFIK---------SEMS-IDPLTGAFNRRSFETII 270

Query: 123 GSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
               E        +++   D+DYFK+IND FGH  GD+ +    + +        +V R+
Sbjct: 271 QKLLEISQITDAPITLAMADLDYFKKINDTFGHLTGDEALKHFVNIIKRNLRKSDYVFRI 330

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           GGEEF      +  ++A  +   +RK +E + +    G  I IT S G+AE    + I+ 
Sbjct: 331 GGEEFLILLPNTELKDAVEIVERIRKDLEENPLYFD-GKEIKITASFGLAEVDKNKYINE 389

Query: 236 IIYRADQALYVAKKSGRNRVVC 257
           II  AD+ LY AK+ GRNRVV 
Sbjct: 390 IIKEADEKLYKAKELGRNRVVV 411


>gi|159897975|ref|YP_001544222.1| diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159891014|gb|ABX04094.1| diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 1774

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 9/167 (5%)

Query: 97   YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
            + ++ +L+  D L+ + N   F            S +  LS +  D+D+FK++ND++GH 
Sbjct: 1606 FGQVQRLAITDSLTQVSNRRHFFELAERQWILTCSSDHPLSAMMLDVDHFKRVNDSYGHS 1665

Query: 150  VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            VGD V+  ++D           +GR GGEEFA     +    A  +A  LR  I N  IN
Sbjct: 1666 VGDLVLRTVADLCRANLRPSDLLGRYGGEEFAILLPDTDVSAALTIAERLRVAIANHVIN 1725

Query: 210  ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
                 SI++T+S G+      +  +++++ RAD+ LY+AK++GR+RV
Sbjct: 1726 HEQA-SINLTVSIGVTGLSKDDNSVASLLDRADRGLYIAKETGRDRV 1771


>gi|110641699|ref|YP_669429.1| hypothetical protein ECP_1521 [Escherichia coli 536]
 gi|191174140|ref|ZP_03035653.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli F11]
 gi|300978589|ref|ZP_07174335.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1]
 gi|300989311|ref|ZP_07178930.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1]
 gi|301050200|ref|ZP_07197094.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1]
 gi|331657535|ref|ZP_08358497.1| putative GGDEF domain protein [Escherichia coli TA206]
 gi|110343291|gb|ABG69528.1| hypothetical protein YdeH [Escherichia coli 536]
 gi|190905558|gb|EDV65184.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli F11]
 gi|300298090|gb|EFJ54475.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1]
 gi|300308135|gb|EFJ62655.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1]
 gi|300407360|gb|EFJ90898.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1]
 gi|315291875|gb|EFU51227.1| diguanylate cyclase domain protein [Escherichia coli MS 153-1]
 gi|320195527|gb|EFW70152.1| hypothetical protein EcoM_01952 [Escherichia coli WV_060327]
 gi|323187195|gb|EFZ72509.1| hypothetical protein ECRN5871_4578 [Escherichia coli RN587/1]
 gi|324006909|gb|EGB76128.1| diguanylate cyclase domain protein [Escherichia coli MS 57-2]
 gi|324014811|gb|EGB84030.1| diguanylate cyclase domain protein [Escherichia coli MS 60-1]
 gi|331055783|gb|EGI27792.1| putative GGDEF domain protein [Escherichia coli TA206]
          Length = 296

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 2/135 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L ++  DID FK +ND +GH +GD V+  L+  L         V R GGEEF      ++
Sbjct: 159 LYLMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVYRYGGEEFIIIVKATN 218

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           ++EA      + ++++N  I  S G  I+IT++AG++    +EP+  +I RAD+A+Y  K
Sbjct: 219 DEEACRAGVRICQLVDNHAITHSEG-HINITVTAGVSRAFPEEPLDVVIGRADRAMYEGK 277

Query: 249 KSGRNRVVCFSDIEN 263
           ++GRNR + F D +N
Sbjct: 278 QTGRNRCM-FIDEQN 291


>gi|296388339|ref|ZP_06877814.1| putative sensory box/GGDEF domain protein [Pseudomonas aeruginosa
           PAb1]
          Length = 307

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 8/158 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G  N  A   +LG   E        LS++  DID+FK++ND++GH VGD+ +  ++
Sbjct: 150 DALTGTGNRIAMDQALGRELELARRNLQPLSVLMLDIDHFKRVNDHYGHTVGDEALKAVA 209

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + +         V R GGEEF      +  Q A ++   LR+ +E       +G  + ++
Sbjct: 210 ETIKDHLRNVDMVFRFGGEEFLVLLSSTPLQAACMVGERLRQAVEELDYR-HAGEPLKLS 268

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IS G A+    E    ++ R D+ALY AK+ GRNR+ C
Sbjct: 269 ISLGCADLRPGEGSDDLLRRVDEALYEAKRDGRNRLRC 306


>gi|162450035|ref|YP_001612402.1| FHA/GGDEF domain-containing protein [Sorangium cellulosum 'So ce
           56']
 gi|161160617|emb|CAN91922.1| FHA and GGDEF domain protein [Sorangium cellulosum 'So ce 56']
          Length = 310

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 14/161 (8%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+   N   F+  L +       +   LS++ FD+D+FK+IND FGH  GD V+A ++
Sbjct: 146 DALTKAFNKKYFLDRLETEVSYARRHGAHLSLLMFDVDHFKRINDTFGHLAGDYVLARIA 205

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
                   T     R GGEEF     G   + A IL   LR +IE S      G  +  T
Sbjct: 206 KIASHTVRTEDVFARYGGEEFGILCRGVGLENAGILGERLRLLIEGSVFE-HEGVRMPTT 264

Query: 220 ISAGIAERCHKE-PIST---IIYRADQALYVAKKSGRNRVV 256
           IS G+A   H E  + T   +I  AD+ALY AK++GRNRV+
Sbjct: 265 ISVGVA--AHPELAVQTGMELIAAADEALYEAKRTGRNRVL 303


>gi|271502301|ref|YP_003335327.1| hemerythrin-like metal-binding domain-containing diguanylate
           cyclase [Dickeya dadantii Ech586]
 gi|270345856|gb|ACZ78621.1| diguanylate cyclase with hemerythrin-like metal-binding domain
           protein [Dickeya dadantii Ech586]
          Length = 521

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 108/210 (51%), Gaps = 12/210 (5%)

Query: 64  ILVENLSLVIISI-TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH------- 115
           +L  + +L II++ +++ LL   +G I+     S +  S + R D L+G  N        
Sbjct: 178 LLASSPALTIINVASLATLLFIANGLIMMTKDRSDHLNSLMLRQDNLTGCWNRIRVQEIA 237

Query: 116 SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
              +  L  Y   +S++ FD+D+FK++ND++GH  GD+V+   +        T   +GR 
Sbjct: 238 RQEMDRLERYGYPVSLLMFDLDHFKKVNDDYGHATGDEVLKAFAYIARTTLRTTDVLGRW 297

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           GGEEF A    +    A + A  +R+ +E+ +   S G  + +T S GIA     +   +
Sbjct: 298 GGEEFVAILPSTGIGGAILTAERIRQALESQR--FSHG--LQVTTSIGIAVCQSTDHWES 353

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            + RAD ALY AK +GRNRV   + I +N+
Sbjct: 354 WLSRADSALYRAKAAGRNRVETEALIVDNS 383


>gi|239787440|emb|CAX83912.1| Diguanylate cyclase [uncultured bacterium]
          Length = 342

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 88/171 (51%), Gaps = 9/171 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           E  ++Y  +   +R D L+GL+N   F       ++    + + L++   D+D+FK IND
Sbjct: 172 ERALAYEDLYDQARRDALTGLVNRRVFEERADVEMAHAQRHKQPLTLACLDLDFFKVIND 231

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+ +  +S            + R+GG+EFA     +S + AA+L   L K + 
Sbjct: 232 RLGHAEGDQALKTVSQTFTKTVRDSDLLARVGGDEFAMILPNTSLENAALLMERLCKAVR 291

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              + IS+  S  + +S GIA    ++ + +   RAD ALY AK++GR++V
Sbjct: 292 --ALQISAPDSAPLGVSVGIASWNTEDSLESWWQRADAALYRAKEAGRSQV 340


>gi|171318964|ref|ZP_02908093.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
 gi|171095807|gb|EDT40757.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
          Length = 510

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 89/186 (47%), Gaps = 12/186 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           L+   ++ +++ +L+  D L+GL N   F + L    ++       LS++F D+D+FK  
Sbjct: 326 LRRRQLAESKLYRLAHTDSLTGLDNRGTFDAVLAKEAQRASRSGRPLSVLFVDVDHFKAF 385

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD V+  ++             V R GGEEF      +  + AA +A  +R+
Sbjct: 386 NDYYGHLAGDDVLRRIAQTASRCLRRDSDHVARYGGEEFVVTLPDTDARGAATVAEAIRR 445

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSD 260
            I    I     P  H+T S G A        +  + R AD+ALY AK  GRNRV   SD
Sbjct: 446 AIAGLDIAHGRSPYGHVTTSIGTATATGGRVNAAALLRLADEALYRAKSGGRNRV---SD 502

Query: 261 IENNTC 266
            E +T 
Sbjct: 503 AEASTA 508


>gi|157803455|ref|YP_001492004.1| response regulator PleD [Rickettsia canadensis str. McKiel]
 gi|157784718|gb|ABV73219.1| response regulator PleD [Rickettsia canadensis str. McKiel]
          Length = 450

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 79/162 (48%), Gaps = 8/162 (4%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  DCL+GL N   F       I      + KL ++  DID FK +ND +GH  GDK++
Sbjct: 287 LAAKDCLTGLFNRRYFDIHLKQMIEKANKESIKLYLLMCDIDNFKYVNDTYGHQAGDKIL 346

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-P 214
             +S  L         + R GGEEF          +A   A  +R  IE    +I     
Sbjct: 347 TIVSRILKNNLRVTDLIARFGGEEFTILLTDIDISKAIETAERVRVKIEYMDFHIEDQIE 406

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  TIS G+ E   +E I + I RAD A+Y AK++G+N+VV
Sbjct: 407 PLKKTISIGVTEYKKEESIESFIARADNAMYEAKRTGKNKVV 448


>gi|91782447|ref|YP_557653.1| diguanylate cyclase [Burkholderia xenovorans LB400]
 gi|91686401|gb|ABE29601.1| Putative diguanylate cyclase (GGDEF domain) [Burkholderia
           xenovorans LB400]
          Length = 563

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 86/183 (46%), Gaps = 27/183 (14%)

Query: 90  LKELFISYNRI-SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           L E   S N + S  +R D L+G L+   F+  L          NE L +   D+D+FKQ
Sbjct: 372 LAEQLQSANTLLSAEARHDALTGALSRRYFLDLLRREIERAHLGNEPLCMAIADLDHFKQ 431

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-- 199
           IND FGH  GD+ +    D           +GRLGGEEF             + A DL  
Sbjct: 432 INDRFGHAAGDRALEHFVDTCRAELRGADAIGRLGGEEFG----------LLLPATDLAG 481

Query: 200 -RKIIENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            R+++E  ++ + + P      S+ +++S GI E    +    I+ RAD ALY AK  GR
Sbjct: 482 GREVVERLRLRLKAMPSPKLPASVGLSVSIGITELSADDLPERIMSRADTALYAAKSGGR 541

Query: 253 NRV 255
           +R 
Sbjct: 542 DRT 544


>gi|39936195|ref|NP_948471.1| response regulator PleD [Rhodopseudomonas palustris CGA009]
 gi|192291911|ref|YP_001992516.1| response regulator PleD [Rhodopseudomonas palustris TIE-1]
 gi|39650050|emb|CAE28573.1| putative diguanylate cyclase (GGDEF) with response regulator
           receiver domain [Rhodopseudomonas palustris CGA009]
 gi|192285660|gb|ACF02041.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris TIE-1]
          Length = 457

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 81/162 (50%), Gaps = 9/162 (5%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N     S L       G+  + L+++  DID+FK IND++GH  GD V+   +
Sbjct: 295 DGLTGLHNRRYMESHLATLAEQAGARGKPLALMILDIDFFKSINDSYGHDAGDDVLREFA 354

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218
            ++           R GGEEF      +    A ++A  LR+ I      I  G   I +
Sbjct: 355 LRIKKSIRGIDLACRYGGEEFVIVMPETDLHVAQMVAERLRRAIAGEPFAIEKGTRRIEV 414

Query: 219 TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           TIS G++    K EPI  ++ RAD ALY AK  GRNRVV  +
Sbjct: 415 TISIGLSTLERKGEPIPDLLKRADTALYRAKHDGRNRVVAAA 456


>gi|307609050|emb|CBW98481.1| hypothetical protein LPW_03181 [Legionella pneumophila 130b]
          Length = 709

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 70/134 (52%), Gaps = 3/134 (2%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +I+  D+D+FK+IND FGH  GD V+  L   L           R GGEEF         
Sbjct: 575 AILMLDLDHFKKINDTFGHDAGDLVLKELGQILNSDIRLGDIAARYGGEEFVLLLYDIDA 634

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247
           Q A + A +LR  I N Q+   + P   IT S GI+      K P + +I  AD+ALY A
Sbjct: 635 QAAKMKAENLRSAISNLQVKYGAQPVGQITASIGISVYPDDAKSP-AEVIEAADKALYQA 693

Query: 248 KKSGRNRVVCFSDI 261
           K  GRN+V+ FS+I
Sbjct: 694 KNKGRNKVILFSEI 707


>gi|117624095|ref|YP_853008.1| hypothetical protein APECO1_994 [Escherichia coli APEC O1]
 gi|218558812|ref|YP_002391725.1| diguanylate cyclase [Escherichia coli S88]
 gi|115513219|gb|ABJ01294.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|218365581|emb|CAR03308.1| putative diguanylate cyclase [Escherichia coli S88]
          Length = 564

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            +AA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 491 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 551 KQAGRNR-VCASD 562


>gi|193064273|ref|ZP_03045356.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E22]
 gi|194425773|ref|ZP_03058329.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B171]
 gi|260843844|ref|YP_003221622.1| hypothetical protein ECO103_1673 [Escherichia coli O103:H2 str.
           12009]
 gi|192929121|gb|EDV82732.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E22]
 gi|194415828|gb|EDX32094.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B171]
 gi|257758991|dbj|BAI30488.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009]
 gi|323163359|gb|EFZ49186.1| hypothetical protein ECE128010_0436 [Escherichia coli E128010]
          Length = 296

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S            L ++  DID FK +ND +GH +GD V+  L
Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      ++++EA      + ++++N  I  S G  I+I
Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 247

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291


>gi|16129494|ref|NP_416052.1| diguanylate cyclase, required for pgaD induction [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89108376|ref|AP_002156.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110]
 gi|157158898|ref|YP_001462827.1| hypothetical protein EcE24377A_1744 [Escherichia coli E24377A]
 gi|170081202|ref|YP_001730522.1| hypothetical protein ECDH10B_1666 [Escherichia coli str. K-12
           substr. DH10B]
 gi|238900756|ref|YP_002926552.1| hypothetical protein BWG_1355 [Escherichia coli BW2952]
 gi|256018237|ref|ZP_05432102.1| hypothetical protein ShiD9_04932 [Shigella sp. D9]
 gi|256022785|ref|ZP_05436650.1| hypothetical protein E4_05399 [Escherichia sp. 4_1_40B]
 gi|293445945|ref|ZP_06662367.1| hypothetical protein ECCG_00091 [Escherichia coli B088]
 gi|300951017|ref|ZP_07164890.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1]
 gi|300959026|ref|ZP_07171122.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1]
 gi|301029209|ref|ZP_07192322.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
 gi|301644661|ref|ZP_07244645.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|307138186|ref|ZP_07497542.1| hypothetical protein EcolH7_08661 [Escherichia coli H736]
 gi|307310919|ref|ZP_07590565.1| diguanylate cyclase [Escherichia coli W]
 gi|331667947|ref|ZP_08368804.1| putative GGDEF domain protein [Escherichia coli TA271]
 gi|332279288|ref|ZP_08391701.1| conserved hypothetical protein [Shigella sp. D9]
 gi|2851425|sp|P31129|YDEH_ECOLI RecName: Full=Diguanylate cyclase YdeH; Short=DGC
 gi|1787816|gb|AAC74608.1| diguanylate cyclase, required for pgaD induction [Escherichia coli
           str. K-12 substr. MG1655]
 gi|85675013|dbj|BAA18882.2| conserved hypothetical protein [Escherichia coli str. K12 substr.
           W3110]
 gi|157080928|gb|ABV20636.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           E24377A]
 gi|169889037|gb|ACB02744.1| conserved protein [Escherichia coli str. K-12 substr. DH10B]
 gi|238860312|gb|ACR62310.1| conserved protein [Escherichia coli BW2952]
 gi|260449343|gb|ACX39765.1| diguanylate cyclase [Escherichia coli DH1]
 gi|291322775|gb|EFE62203.1| hypothetical protein ECCG_00091 [Escherichia coli B088]
 gi|299877845|gb|EFI86056.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
 gi|300314321|gb|EFJ64105.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1]
 gi|300449692|gb|EFK13312.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1]
 gi|301077027|gb|EFK91833.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|306909097|gb|EFN39593.1| diguanylate cyclase [Escherichia coli W]
 gi|315060816|gb|ADT75143.1| conserved protein [Escherichia coli W]
 gi|315136175|dbj|BAJ43334.1| hypothetical protein ECDH1ME8569_1478 [Escherichia coli DH1]
 gi|323378616|gb|ADX50884.1| diguanylate cyclase [Escherichia coli KO11]
 gi|324020237|gb|EGB89456.1| diguanylate cyclase domain protein [Escherichia coli MS 117-3]
 gi|331064911|gb|EGI36813.1| putative GGDEF domain protein [Escherichia coli TA271]
 gi|332101640|gb|EGJ04986.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 296

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S            L ++  DID FK +ND +GH +GD V+  L
Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      ++++EA      + ++++N  I  S G  I+I
Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 247

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291


>gi|293605320|ref|ZP_06687705.1| diguanylate cyclase [Achromobacter piechaudii ATCC 43553]
 gi|292816259|gb|EFF75355.1| diguanylate cyclase [Achromobacter piechaudii ATCC 43553]
          Length = 382

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 125/252 (49%), Gaps = 17/252 (6%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           +W C  + L++ +P  F++  +   ++F A   F A +  + + L   YG    L  +  
Sbjct: 138 MWRC--EPLKALAPRRFVVAITGIHALFYA---FRALLLPWLVSL---YGASAQLAASNI 189

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYN 126
            +   +  S+LL      +++E   ++ ++ + S+ D L+ L N   F       L ++ 
Sbjct: 190 TMYEGVLYSVLLPMALLKLVRE--EAHGQLVRESQTDYLTRLGNRRWFFEEGARLLRAHG 247

Query: 127 EK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
            +  ++++ FD+D+FK IND  GH  GD+V+   +D    V G  + + R+GGEEFAA  
Sbjct: 248 AQGPVAVLAFDLDHFKSINDRHGHQTGDQVLKVFADIAQEVAGPNVLLARIGGEEFAALL 307

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQA 243
           +G + ++A  L   + +    +    +    I  T+S G+A    +  P++  +  AD+A
Sbjct: 308 MGDAARQAQSLGESVARRFAGTASERADRSEIRATVSIGLARFDDNAPPLADSLAAADRA 367

Query: 244 LYVAKKSGRNRV 255
           LY AK  G NR+
Sbjct: 368 LYRAKSLGGNRL 379


>gi|188581430|ref|YP_001924875.1| diguanylate cyclase [Methylobacterium populi BJ001]
 gi|179344928|gb|ACB80340.1| diguanylate cyclase [Methylobacterium populi BJ001]
          Length = 406

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 13/177 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  R   LS+ D L+GL N  A    L ++      ++++  DID+FK+ ND+ GHP GD
Sbjct: 221 ARQRFQDLSQTDALTGLPNRRALDLCLDAWLSNGGSVAMLMIDIDHFKRFNDSLGHPEGD 280

Query: 153 KVIAFLSDQLVV-VFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
             +  +++ L    F        R GGEEFA     +   EAA LA+DL + +    +  
Sbjct: 281 ICLRRVAETLAASTFAREDCLCARYGGEEFAVVLKEAGRAEAARLADDLVRAVAALGLRH 340

Query: 211 SSGPSIH--ITISAGIAERC------HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                ++  +T S G+A          ++P + ++  AD+ALY+AK+ GRNR V + 
Sbjct: 341 PGRRDMYRIVTASIGVASTEPAGAGFREDPKAALVTMADRALYMAKQGGRNRAVVYD 397


>gi|117920851|ref|YP_870043.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117613183|gb|ABK48637.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 341

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 82/160 (51%), Gaps = 6/160 (3%)

Query: 107 DCLSGLLNHSAFISSLG----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+G LN  AF + L        E   ++  DID+FK  NDN+GH +GD+V+  +S +L
Sbjct: 182 DALTGCLNRRAFDADLAGMLAQAPEGTCLILVDIDHFKAFNDNYGHQLGDQVLKAVSKRL 241

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITI 220
                    + R GGEEFA     S  + A  LA  +R+ +E   +          +IT 
Sbjct: 242 QEACRDGCKLYRFGGEEFAIIVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDQRIDNITA 301

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           S G+A+   K+    +I RAD  LY AK+ GRNRV+  S+
Sbjct: 302 SFGVAQWQEKQVAIHLIERADMLLYEAKRLGRNRVMPMSN 341


>gi|256823494|ref|YP_003147457.1| diguanylate cyclase [Kangiella koreensis DSM 16069]
 gi|256797033|gb|ACV27689.1| diguanylate cyclase [Kangiella koreensis DSM 16069]
          Length = 700

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 11/174 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISS------LGSYNEK-LSIVFFDIDYFKQIND 144
           EL     R+ ++S  D L+ + N   F ++      L   N   L+    DID+FK++ND
Sbjct: 523 ELIAMNERLEKMSVEDELTKIYNRRGFEAAANEAFKLACRNRTALTFAMLDIDHFKRVND 582

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH VGD+ I  ++ +L  VF     F  R GGEEF     G +  +   +   LRK I
Sbjct: 583 TWGHVVGDECIVMVAKELKKVFLRETDFYARYGGEEFVVLLTGGNTDKHCRMLEQLRKDI 642

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
           EN ++ +  G +I +T+S G+        IS   ++ +AD+ LY +K  GRNR+
Sbjct: 643 ENHKVAV-DGENISLTVSIGVFSLKEDFNISYHQLVSKADKLLYQSKTEGRNRI 695


>gi|307944421|ref|ZP_07659761.1| diguanylate cyclase [Roseibium sp. TrichSKD4]
 gi|307772170|gb|EFO31391.1| diguanylate cyclase [Roseibium sp. TrichSKD4]
          Length = 723

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 12/170 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ Q++  D L+ + N  AF       I+         S++  D+D+FK+INDNFGH VG
Sbjct: 548 RLEQIASTDDLTKIFNRRAFFKLAARDIARFRRTGTTFSVLMIDVDHFKKINDNFGHAVG 607

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-NSQINI 210
           D V+   +D +          GR+GGEEF      +  + A ++A  LR+ IE N  ++ 
Sbjct: 608 DAVLKKFADIIAPSLRAVDIFGRIGGEEFCVILHNTGVENALLVAERLREEIEVNCMVSP 667

Query: 211 SSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
              P    T S GI+E    +   ++I+ RAD ALY +K +GRN+    S
Sbjct: 668 MQKPP---TCSIGISEISATDVEFTSILQRADAALYQSKHTGRNKSTIHS 714


>gi|209549745|ref|YP_002281662.1| response regulator receiver modulated diguanylate cyclase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535501|gb|ACI55436.1| response regulator receiver modulated diguanylate cyclase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 443

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 91/177 (51%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKL------SIVFFDIDYFKQIND 144
           E      ++   +  D L+GL N   F  +     NE L      S+   DID+FK++ND
Sbjct: 261 ETLAQMRQLRAAAACDYLTGLYNRRYFYDNGPKLVNECLRLKVPSSVAILDIDHFKRLND 320

Query: 145 NFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH +GDKV+  ++++L  +F G+   + RLGGEEFA          A  L +++R  I
Sbjct: 321 TYGHEIGDKVLKAVANRLFTIFEGSDNLLSRLGGEEFAILFPQMDSAAATKLCDEIRSDI 380

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              ++  +    + +TIS GIAE    E     +  ADQ LY+AK  GRN+V  FSD
Sbjct: 381 SRLKV-TADDEELGVTISIGIAEIEGYETFENYLNAADQFLYMAKHRGRNQV--FSD 434


>gi|91211175|ref|YP_541161.1| hypothetical protein UTI89_C2157 [Escherichia coli UTI89]
 gi|114154897|sp|Q1RAI4|YEDQ_ECOUT RecName: Full=Cellulose synthesis regulatory protein
 gi|91072749|gb|ABE07630.1| hypothetical protein UTI89_C2157 [Escherichia coli UTI89]
          Length = 569

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 376 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 435

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 436 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 495

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            +AA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 496 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 555

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 556 KQAGRNR-VCASD 567


>gi|331663040|ref|ZP_08363950.1| putative GGDEF domain protein [Escherichia coli TA143]
 gi|331058839|gb|EGI30816.1| putative GGDEF domain protein [Escherichia coli TA143]
          Length = 296

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S            L ++  DID FK +ND +GH +GD V+  L
Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      ++++EA      + ++++N  I  S G  I+I
Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 247

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291


>gi|294102208|ref|YP_003554066.1| diguanylate cyclase [Aminobacterium colombiense DSM 12261]
 gi|293617188|gb|ADE57342.1| diguanylate cyclase [Aminobacterium colombiense DSM 12261]
          Length = 366

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 111/234 (47%), Gaps = 22/234 (9%)

Query: 39  IATVIFIANIF----LFYIGLTPFYGLEYILVENLSLVIISIT--ISLLLG---YISGSI 89
           I +++ IA+ F    LFY+         +IL+   ++VI  I   IS  L    ++ G I
Sbjct: 138 ILSILLIAHGFFVGTLFYVQSNTSVIQNHILISTGAVVIAFIVSRISFQLKTRTFLDGKI 197

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           ++E       +  LS  D ++GL NH      L         Y+  LS+  FD+D FK +
Sbjct: 198 IEE---QLETLKDLSIRDSMTGLYNHKHICQRLEEEIRRAFRYDSPLSVGIFDLDGFKNV 254

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH  GD VI  ++  +++ F     +GR GG+EF      ++ + A   +   RK 
Sbjct: 255 NDTFGHQEGDVVILRVAQTMILTFRNTDILGRYGGDEFLVILPETNLESAVTCSERFRK- 313

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             N    +    +  ++IS G+A     +   ++I RAD  LY AKK G+N +V
Sbjct: 314 --NLLERLQGTRNDLLSISGGVATLKKDDSAQSLIQRADTLLYEAKKLGKNTIV 365


>gi|294140101|ref|YP_003556079.1| response regulator [Shewanella violacea DSS12]
 gi|293326570|dbj|BAJ01301.1| response regulator [Shewanella violacea DSS12]
          Length = 306

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 84/171 (49%), Gaps = 13/171 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
           +++  ++  D L+ L N    I S  S       +   LS++  DID+FK IND FGH V
Sbjct: 129 DQLRNMALHDQLTKLYNRHFLIESAASKLAYVDRHGNDLSVLMIDIDFFKHINDQFGHHV 188

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  ++D L         V R GGEEF       S + A   A  LR     +QI  
Sbjct: 189 GDRVLKAIADILKTGNRREDVVARFGGEEFVVLLEHCSLKSAVEKAESLR-----AQIEA 243

Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                I +T S G+A+   H++    ++ RAD A+Y AK  GRNRVV   D
Sbjct: 244 LEPMGIAVTASFGVAQLMKHEQTFVELLSRADAAVYQAKDLGRNRVVAAED 294


>gi|289675727|ref|ZP_06496617.1| GGDEF [Pseudomonas syringae pv. syringae FF5]
 gi|330976813|gb|EGH76847.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 551

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 88/158 (55%), Gaps = 12/158 (7%)

Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +      S  S  E   + F   DID+FK++ND+ GHP+GD+VI  L+
Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRREGKPLCFAMLDIDHFKRVNDSHGHPMGDRVIKSLA 438

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L        F+GR GGEEFA     +  Q A  + +D+R     ++I+  + P+ +  
Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIQSAHGVLDDIRHRF--AEIHYPAQPADLFC 496

Query: 219 TISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T SAG +A   H + +S +  +AD ALY AK +GRNRV
Sbjct: 497 TFSAGVVALGAHDDSLS-LASQADTALYCAKHAGRNRV 533


>gi|256821347|ref|YP_003145310.1| diguanylate cyclase [Kangiella koreensis DSM 16069]
 gi|256794886|gb|ACV25542.1| diguanylate cyclase [Kangiella koreensis DSM 16069]
          Length = 688

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 87/161 (54%), Gaps = 10/161 (6%)

Query: 103 LSRIDCLSGLLNHS----AFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N      A    + S N+    LSI+ +DID+FK +ND  GH VGD V+
Sbjct: 526 LAHTDSLTGLANRRQIERALKREMESSNQSGKPLSILMYDIDHFKVVNDIHGHSVGDVVL 585

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INISSGP 214
             LS+    +      +GR GGEEF A    ++  +A  +A  L++ ++  Q   I S  
Sbjct: 586 TNLSNFSKELLRDNDVLGRTGGEEFLAVLPNANLDQAIQVAKRLQQEVDLKQYTEIES-- 643

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++ TIS G+ E    E +   + R D+ALY AK++GRNRV
Sbjct: 644 ELNATISVGVTEYKQGEHMDEFLRRVDEALYQAKENGRNRV 684


>gi|308126563|ref|ZP_05910869.2| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|308109794|gb|EFO47334.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 369

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 21/172 (12%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHP 149
           ++  LS  D L+GL N   F   L  Y              +  FDID+FK+IND  GH 
Sbjct: 203 QLRNLSEKDGLTGLWNRRKFEEQLTHYANIVERYPDTPTTCLALFDIDHFKRINDERGHD 262

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GDKVI  +++ L+    T  FV R+GGEEFA     ++ +EA ++ N LR       + 
Sbjct: 263 EGDKVICSVAETLLREVRTTDFVSRVGGEEFAVIMPHTTVKEAEVVLNRLR-------VA 315

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VCFS 259
           +    ++ +T+SAG ++       S   Y+ AD ALY +K +GRN V +C S
Sbjct: 316 VQLRSNMTVTVSAGYSDLTADRTRS---YKCADIALYESKSAGRNCVSLCHS 364


>gi|300931169|ref|ZP_07146515.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
 gi|300461002|gb|EFK24495.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
          Length = 558

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQACHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 545 KQAGRNR-VCASD 556


>gi|257056862|ref|YP_003134694.1| diguanylate cyclase (GGDEF) domain-containing protein
           [Saccharomonospora viridis DSM 43017]
 gi|256586734|gb|ACU97867.1| diguanylate cyclase (GGDEF) domain-containing protein
           [Saccharomonospora viridis DSM 43017]
          Length = 409

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 117/255 (45%), Gaps = 36/255 (14%)

Query: 35  FSIFIATVIFIANIFLFYIGL-----TPFYGLEYILVENLSLVIISITISLLLGYISG-- 87
           F + +AT +    + + Y+G      +P   +  +L      ++ +IT  L  G ++   
Sbjct: 150 FGLILATALVYEGVQVLYVGGILALGSPSPTVRTVLGSKADNLLEAITTGL--GAVTAVL 207

Query: 88  --------SILKELFISYNRISQLSRI------DCLSGLLNHSAFISS-------LGSYN 126
                   +I+  + + +NR+++L ++      D  +GLLN   +  S       +    
Sbjct: 208 VVTMPPAVAIMAVVTVVFNRLAELDQLQDAVVTDPKTGLLNMRGWTESAERALNRVRRSG 267

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             L+++  D+D+FKQIND FGHP GD  +A +++ L  V      VGR GGEEF      
Sbjct: 268 STLAVLMVDLDHFKQINDTFGHPAGDDALAAVANALSSVTRPADLVGRFGGEEFLLLLPN 327

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE------RCHKEPISTIIYRA 240
           +    A + A  +R  I   +I  +      +TIS   A         H + +  ++  A
Sbjct: 328 ADAAAAELAAERVRTTIAALRIPTTDKRGAQVTISGRTASIGIAVFPRHADDLDGLLQAA 387

Query: 241 DQALYVAKKSGRNRV 255
           D A+Y AK++GRNR+
Sbjct: 388 DTAVYDAKEAGRNRI 402


>gi|167573836|ref|ZP_02366710.1| ggdef domain protein [Burkholderia oklahomensis C6786]
          Length = 487

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +L+R D L+GL N  AF  +L          +  LS++F DID FK  ND +GH  G
Sbjct: 315 RLQRLARTDSLTGLGNRRAFDENLRREWARALRSSRPLSLLFVDIDQFKNYNDCYGHQAG 374

Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D V+  ++  L + V      V R GGEEF      +  + A+ +A  LR+ + +  I  
Sbjct: 375 DDVLREVARCLALNVRRAADDVSRYGGEEFVITLPDTDAKSASAIAEHLRRAVYDLDIEH 434

Query: 211 SSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNRV 255
              P   +T+S G+    H   +   + ++  AD ALY AK +GRNRV
Sbjct: 435 EKSPYRRVTVSIGLVT-SHDNAMHSDTALVKMADAALYQAKSTGRNRV 481


>gi|260779022|ref|ZP_05887914.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605186|gb|EEX31481.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 380

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 90/175 (51%), Gaps = 11/175 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           K+L  +  ++ +LS  D L+ L N    I  L +Y        E L  +  D D FKQ+N
Sbjct: 193 KQLSKANKQLEELSLTDPLTQLPNRRCAIRKLKAYWHESTLNQEPLVCIMIDADNFKQVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GD+++  L+  L   F +   V RLGG+EF      +  +  A +A   R+I+
Sbjct: 253 DSAGHDAGDRLLVELAQTLNDSFRSDDLVCRLGGDEFFVICPNTDVEGGAHVAEQTRQIV 312

Query: 204 ENSQINISSGPSIHI-TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             +Q+ + +G  I   +IS G+AER ++    + +I  AD A+Y AK  GRN V 
Sbjct: 313 --AQMRVPAGDDIWCGSISVGVAERTYEMRDFNDLIKGADNAVYKAKSQGRNCVA 365


>gi|238751566|ref|ZP_04613057.1| Diguanylate cyclase [Yersinia rohdei ATCC 43380]
 gi|238710284|gb|EEQ02511.1| Diguanylate cyclase [Yersinia rohdei ATCC 43380]
          Length = 370

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 3/154 (1%)

Query: 106 IDCLSGLLNHSAFISSLGS-YNEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           ID L+ L N ++    L + YN + +  ++  D+D+FK +ND +GH  GD +++ +   L
Sbjct: 196 IDKLTQLNNRASVDYRLTTIYNNRQACGLMILDLDHFKFVNDTYGHDAGDVMLSEIGRLL 255

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                   FVGR GGEEF         Q    +A  +R+++EN  + + SG  I  T+S 
Sbjct: 256 TEAIRDEDFVGRYGGEEFIIITHRHEPQTITAVAERIRQLVENLTVELPSGEKIKATMSI 315

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G +       +   +  AD+ALY AK+ GRN+VV
Sbjct: 316 GASLYLPGMSMLKALKMADEALYQAKRQGRNQVV 349


>gi|218558443|ref|YP_002391356.1| hypothetical protein ECS88_1617 [Escherichia coli S88]
 gi|218365212|emb|CAR02932.1| conserved hypothetical protein [Escherichia coli S88]
 gi|294489729|gb|ADE88485.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           IHE3034]
 gi|307626941|gb|ADN71245.1| hypothetical protein UM146_09310 [Escherichia coli UM146]
 gi|315286286|gb|EFU45722.1| diguanylate cyclase domain protein [Escherichia coli MS 110-3]
 gi|323952556|gb|EGB48428.1| GGDEF domain-containing protein [Escherichia coli H252]
          Length = 296

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 2/135 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L ++  DID FK +ND +GH +GD V+  L+  L         V R GGEEF      ++
Sbjct: 159 LYLMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVYRYGGEEFIIIVKATN 218

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           ++EA      + ++++N  I  S G  I+IT++AG++    +EP+  +I RAD+A+Y  K
Sbjct: 219 DEEACRAGVRICQLVDNHAITHSEG-HINITVTAGVSRAFPEEPLDVVIGRADRAMYEGK 277

Query: 249 KSGRNRVVCFSDIEN 263
           ++GRNR + F D +N
Sbjct: 278 QTGRNRCM-FIDEQN 291


>gi|90578701|ref|ZP_01234511.1| hypothetical sensory box/GGDEF family protein [Vibrio angustum S14]
 gi|90439534|gb|EAS64715.1| hypothetical sensory box/GGDEF family protein [Vibrio angustum S14]
          Length = 339

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 15/172 (8%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148
           S  +++ LS  D L+ L N   + + L          ++ +++V FDID+FK +ND +GH
Sbjct: 146 SNEQLTHLSITDRLTQLYNRGHWENCLVEEFEHYQQMHQPMTLVMFDIDHFKNVNDTYGH 205

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD VI  ++D +          GR GGEEF     G++    +     LRK +E + +
Sbjct: 206 VAGDAVIKTIADIVRKAKRQSDIAGRYGGEEFGVILPGTTADMTSYFTERLRKKVERANV 265

Query: 209 NISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVV 256
            +  G +I++TIS G+   C   P      + + + D ALY +K  GRN+  
Sbjct: 266 -VVDGKTINVTISLGV---CQLHPGITNYESWLEQTDSALYESKNKGRNQTT 313


>gi|254227594|ref|ZP_04921025.1| FOG: EAL domain containing protein [Vibrio sp. Ex25]
 gi|262395643|ref|YP_003287496.1| C-di-GMP phosphodiesterase A-related protein [Vibrio sp. Ex25]
 gi|151939636|gb|EDN58463.1| FOG: EAL domain containing protein [Vibrio sp. Ex25]
 gi|262339237|gb|ACY53031.1| C-di-GMP phosphodiesterase A-related protein [Vibrio sp. Ex25]
          Length = 788

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 99/188 (52%), Gaps = 20/188 (10%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFDIDYFKQIN 143
            + +EL I Y +  +L+  D L+ L N    H      L S ++ L +++ D+D FK +N
Sbjct: 324 DMYEELNIIYKKTKRLAETDHLTQLANRHRFHELATRELVSPSQHLWVIYVDLDNFKYVN 383

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-------FGTPMFVGRLGGEEFAAAALGSSEQEAA--- 193
           D +GH +GD ++   S  +  V       + +P F  RL G+EF  A L SS Q+A    
Sbjct: 384 DKYGHELGDNLLKVFSSHIKNVCQKFSHDYDSPCFAARLSGDEF--AILLSSNQDAQRLP 441

Query: 194 -ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSG 251
            +LA++L K I N  ++ S   S  +T S GIA+       ++ ++  AD A+Y AK++G
Sbjct: 442 DLLASELLKPISN--LSPSWSNSFPVTASVGIAQYPQDGTDVAKLLSSADAAMYQAKRAG 499

Query: 252 RNRVVCFS 259
           +N+   +S
Sbjct: 500 KNQYAYYS 507


>gi|119773920|ref|YP_926660.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B]
 gi|119766420|gb|ABL98990.1| GGDEF domain protein [Shewanella amazonensis SB2B]
          Length = 592

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 99/201 (49%), Gaps = 17/201 (8%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSL 122
           S ++I++   + LG   G+     + S  R+ QL+  D L+GL +   F       +   
Sbjct: 385 SRLLIAVLFCITLGL--GTWGWHSWQSQRRLKQLAEFDSLTGLFSRGHFTQVSLSAVEYA 442

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEE 179
            + N  +S +  D+D FKQIND  GH  GD   K +A +  + V  +      GR+GGEE
Sbjct: 443 KTLNAPISCILLDVDKFKQINDRLGHATGDWALKEVARICKEQVREY---EIFGRIGGEE 499

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIY 238
           F         + A  LAN + + +  +  + +SG    +T S G+ +       +  ++ 
Sbjct: 500 FCLLLPECELKHATDLANAMCQALRGADTS-ASGHKFELTASFGVTDNARAGYSLDKLMA 558

Query: 239 RADQALYVAKKSGRNRVVCFS 259
           +AD+A+Y AKK GRN+V C+S
Sbjct: 559 QADKAMYSAKKQGRNQVQCYS 579


>gi|302878330|ref|YP_003846894.1| diguanylate cyclase [Gallionella capsiferriformans ES-2]
 gi|302581119|gb|ADL55130.1| diguanylate cyclase [Gallionella capsiferriformans ES-2]
          Length = 599

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 85/172 (49%), Gaps = 8/172 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQIND 144
           +L    + +S+L   D L+G LN     ++       +   +E L I   DID FK++ND
Sbjct: 426 KLEKELSEVSELVHQDQLTGALNRRGLDAAFDRESRRVDRSHESLCIALLDIDNFKRLND 485

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGDK +  L   +         V R GGEEF       +  EAA+    L++ + 
Sbjct: 486 TMGHQVGDKALIHLCHVIKEALRPSDSVARYGGEEFVLILPDVTLAEAALTVERLQREL- 544

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             Q  +     I +T SAG+A+    E    +I RAD+A+Y AK++G+NRVV
Sbjct: 545 TKQFFMHENDRILVTFSAGVAQLAPNESQEELIGRADKAMYQAKQTGKNRVV 596


>gi|261340977|ref|ZP_05968835.1| YaiC/YhcK/ArdA family protein [Enterobacter cancerogenus ATCC
           35316]
 gi|288316842|gb|EFC55780.1| YaiC/YhcK/ArdA family protein [Enterobacter cancerogenus ATCC
           35316]
          Length = 367

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 108/224 (48%), Gaps = 22/224 (9%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI 100
           T+    NI  F  G     GLE+     L+L ++ I   +L  ++S      L     R+
Sbjct: 153 TLHLTGNIITFAPG-----GLEW----GLTLPVL-ILYPMLFAWVSHQTAIRLAEHKRRL 202

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDK 153
             +S  D ++G+ N   + + L +  E+        +I+  DID+FK IND +GH VGD+
Sbjct: 203 ELMSSRDGMTGVYNRRHWENLLRNEYEQCRRSHREATILLIDIDHFKGINDTWGHDVGDE 262

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISS 212
            I  ++ QL +      F+GR GG+EFA    G+   E+AI A  + ++ E  + + +  
Sbjct: 263 AIIAITRQLQMSLRAGDFIGRFGGDEFAVIMSGTP-AESAIAA--MSRVHERLNHMTLPR 319

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            P + + IS G+A  R         +  AD ALY AK +GR R 
Sbjct: 320 APGVRLRISVGVAPWRTQFGHYREWLKAADVALYKAKNAGRGRT 363


>gi|254506497|ref|ZP_05118639.1| diguanylate cyclase [Vibrio parahaemolyticus 16]
 gi|219550671|gb|EED27654.1| diguanylate cyclase [Vibrio parahaemolyticus 16]
          Length = 325

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 9/167 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +LS  D L+ +LN  AF+  L           E +S +  DID+FK+IND  GH  GD
Sbjct: 138 LKRLSETDELTKVLNRRAFMLELDQAFMAARQAKEHVSCLMIDIDHFKEINDQVGHLSGD 197

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +VIA ++        +   +GRLGGEEF          +A  +A  +R+ IE +   +  
Sbjct: 198 EVIAHVARICQQQIRSSDAIGRLGGEEFGIMLSKIGAIQAYDIAERIRESIETTPCEV-D 256

Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           G  I  T+S GIAE       + T++ +AD+A+Y +K +GRN+V  +
Sbjct: 257 GKLIFPTVSIGIAEADDTLSDVKTLLVQADKAMYYSKHTGRNQVTIY 303


>gi|166364040|ref|YP_001656313.1| two-component response regulator [Microcystis aeruginosa NIES-843]
 gi|166086413|dbj|BAG01121.1| two-component response regulator [Microcystis aeruginosa NIES-843]
          Length = 310

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 9/165 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ +L R D L+G+ N    +            Y+   S++F DID+FK IND FGH +G
Sbjct: 141 QLEKLVRTDSLTGVNNRREILYLGEKEFQRCRRYHRYFSVLFIDIDHFKHINDTFGHTLG 200

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           +K +  ++  +          GR GGEEF A    ++ ++AA  A  + ++I    I ++
Sbjct: 201 NKTLITVAGAIKTCLRQVDSFGRFGGEEFVAILPETNLEDAATTAQRICQVINKLNIELA 260

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
               + +T S G+A        +  +I RAD A++ AK  GRNRV
Sbjct: 261 Q-QKVRVTASIGVATFSPQDNNLEEVIERADHAMFAAKNQGRNRV 304


>gi|85712024|ref|ZP_01043078.1| Signaling protein with a sensor domain and GGDEF domain [Idiomarina
           baltica OS145]
 gi|85694210|gb|EAQ32154.1| Signaling protein with a sensor domain and GGDEF domain [Idiomarina
           baltica OS145]
          Length = 518

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 80/165 (48%), Gaps = 9/165 (5%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N +A    +           E +SI   DID+FK+INDNFGH  GDK +  ++
Sbjct: 355 DSLTKLPNRAALEERMRVEEQRFKRTKEPVSIAVLDIDFFKRINDNFGHSAGDKTLQVIA 414

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L        FV R GGEEF      +   +A        + I N      S   I IT
Sbjct: 415 SMLRKAVNESDFVCRYGGEEFVVLFPNTPIADAQARLEKACERIRNIPFKFRS-EDIRIT 473

Query: 220 ISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +S GIAE     + ++++   AD ALY AKK+GRN++V  S + N
Sbjct: 474 VSVGIAELQQVNQSLTSLFETADNALYEAKKTGRNKIVLASAVSN 518


>gi|114048947|ref|YP_739497.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113890389|gb|ABI44440.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 324

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 86/170 (50%), Gaps = 9/170 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +L  +  ++ +LS+ D L+ L N   +   L         Y+   S+V  DID+FK+IND
Sbjct: 144 QLKAANEQLERLSQTDGLTQLHNRRHWQQCLEHEFDLYARYSGMSSLVMIDIDHFKRIND 203

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GDKVI  ++  L         VGR GGEEFA     +   +A      LR+ I 
Sbjct: 204 TYGHVAGDKVIQHIAHILSHSLRETDCVGRYGGEEFAVVMPNTCGADALNFTERLRERIA 263

Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
           +S I +  G  I +T+S G+ E   H    S  I  +D+ALY AK+ GRN
Sbjct: 264 DSTI-VYEGLKIKVTVSLGVCEIGKHITSSSGWISCSDKALYEAKQKGRN 312


>gi|328471925|gb|EGF42802.1| putative sensory box/GGDEF family protein [Vibrio parahaemolyticus
           10329]
          Length = 626

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 21/172 (12%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHP 149
           ++  LS  D L+GL N   F   L  Y              +  FDID+FK+IND  GH 
Sbjct: 460 QLRNLSEKDGLTGLWNRRKFEEQLTHYANIVERYPDTPTTCLALFDIDHFKRINDERGHD 519

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GDKVI  +++ L+    T  FV R+GGEEFA     ++ +EA ++ N LR       + 
Sbjct: 520 EGDKVICSVAETLLREVRTTDFVSRVGGEEFAVIMPHTTVKEAEVVLNRLR-------VA 572

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VCFS 259
           +    ++ +T+SAG ++       S   Y+ AD ALY +K +GRN V +C S
Sbjct: 573 VQLRSNMTVTVSAGYSDLTADRTRS---YKCADIALYESKSAGRNCVSLCHS 621


>gi|291286731|ref|YP_003503547.1| diguanylate cyclase with PAS/PAC sensor [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290883891|gb|ADD67591.1| diguanylate cyclase with PAS/PAC sensor [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 303

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 83/178 (46%), Gaps = 7/178 (3%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHS-AFISSLGSYNEKL------SIVFFDID 137
           +S +   EL     ++ +    D L+ + N   A I+     NE L      S+ F DID
Sbjct: 123 LSKNTHGELICELEKLKEEVYTDTLTSIGNRKYAEITLTRRINEWLDVGIPFSVFFLDID 182

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND +GH  GDKV+  +   L     +     R GGEEF   A   +      +A 
Sbjct: 183 DFKTVNDTYGHDTGDKVLKMVGKSLTGTLRSMDVACRWGGEEFVIIAPNLTPASTRAVAE 242

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            LR  IE S I+      I IT+S G       +   ++I RAD A+Y +K+SG+NRV
Sbjct: 243 RLRIFIEKSWIHAGDNKEISITVSVGCTVCKGNDTPESVIKRADSAMYKSKQSGKNRV 300


>gi|209550963|ref|YP_002282880.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209536719|gb|ACI56654.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 385

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 91/171 (53%), Gaps = 11/171 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           S N++++L+  D L+G LN       + +LGS  + +S++  DID+FKQ+ND  GH  GD
Sbjct: 215 SRNQLTELAHHDPLTGALNRGGLAQRLPALGS--QPVSLLIIDIDHFKQLNDRHGHASGD 272

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++   +     + G+   + R GG+EF       S Q+A  +A  +R     + ++   
Sbjct: 273 DILRLFASVSRSIMGSNDLLARQGGDEFLVVLKDVSGQDAVAIAERIRLAFAAAVLH--- 329

Query: 213 GPSIHI--TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            P + +  T+S G+A R         +I +AD+ALY +K+ GRNRV  F +
Sbjct: 330 QPDLAVFPTLSIGVATRGKSGGDFEQLIKKADEALYRSKREGRNRVKAFGE 380


>gi|170736188|ref|YP_001777448.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3]
 gi|169818376|gb|ACA92958.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3]
          Length = 510

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 9/176 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           LK    +  ++ +L+  D L+GL N   F + L    ++       LS++F D+D+FK  
Sbjct: 326 LKRRQEAEAKLYRLAHTDSLTGLDNRGTFDTVLAKETQRASRSGRPLSVLFVDVDHFKAF 385

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GHP GD V+  ++  L          V R GGEEF      +    AA +A  +R+
Sbjct: 386 NDYYGHPAGDDVLRQVAQSLSRCLRRDSDHVARYGGEEFVVTLPDTDGPGAATVAEGIRR 445

Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
            I    I         +T+S G A     +   +T++ RAD+ALY AK  GRNRV+
Sbjct: 446 AIAELGIEHVKSQYGRVTVSIGTATADDGRMNAATLLRRADEALYRAKSGGRNRVL 501


>gi|89092064|ref|ZP_01165019.1| diguanylate cyclase (GGDEF domain) [Oceanospirillum sp. MED92]
 gi|89083799|gb|EAR63016.1| diguanylate cyclase (GGDEF domain) [Oceanospirillum sp. MED92]
          Length = 716

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 90/196 (45%), Gaps = 26/196 (13%)

Query: 85  ISGSILKELFISYNRI---------------SQLSRIDCLSGLLNH-------SAFISSL 122
           + G IL  L I  NR+               ++ +  D L+GL N           I+S 
Sbjct: 525 VGGLILMGLLIYRNRVISSYNSKLMNLNELLAKQATTDHLTGLSNRYLINQEMEKAIASA 584

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
             Y   L+++ FD+D FKQIND FGH  GD V+  +S  L+        +GR GGEEF  
Sbjct: 585 SRYETPLALILFDLDLFKQINDQFGHQAGDAVLQEVSQLLISESRQADTLGRWGGEEFIM 644

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
               +    A ++AN   KI E+++    S     IT SAG       E    +I R D 
Sbjct: 645 LCPHTDLNGAKLIAN---KICESTKAKKYS-VDFPITFSAGATVYIQGESHHELIKRVDD 700

Query: 243 ALYVAKKSGRNRVVCF 258
           ALY AK SGR+++V  
Sbjct: 701 ALYQAKNSGRDKIVSL 716


>gi|15597048|ref|NP_250542.1| hypothetical protein PA1851 [Pseudomonas aeruginosa PAO1]
 gi|107101284|ref|ZP_01365202.1| hypothetical protein PaerPA_01002318 [Pseudomonas aeruginosa PACS2]
 gi|254234946|ref|ZP_04928269.1| hypothetical protein PACG_00822 [Pseudomonas aeruginosa C3719]
 gi|254240244|ref|ZP_04933566.1| hypothetical protein PA2G_00887 [Pseudomonas aeruginosa 2192]
 gi|9947839|gb|AAG05240.1|AE004611_5 hypothetical protein PA1851 [Pseudomonas aeruginosa PAO1]
 gi|126166877|gb|EAZ52388.1| hypothetical protein PACG_00822 [Pseudomonas aeruginosa C3719]
 gi|126193622|gb|EAZ57685.1| hypothetical protein PA2G_00887 [Pseudomonas aeruginosa 2192]
          Length = 401

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 95/197 (48%), Gaps = 16/197 (8%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ISSLG 123
            LV++  + +L   Y+     +E F+    +  ++  D L+GL+N   +          G
Sbjct: 199 GLVVLICSFAL---YLQDYAQREQFLGRRLLGMMAEQDSLTGLVNRRYYELLAQRALEQG 255

Query: 124 SYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFA 181
           +  EK ++++  D+D FK  ND++GHP GD  +  L   L      P+    RLGGEEFA
Sbjct: 256 AREEKGVALILVDVDDFKAYNDHYGHPAGDAALRQLGVVLRQGARRPLDIAARLGGEEFA 315

Query: 182 AAALGSSEQEAAILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEPISTIIY 238
                S E     +A  LR+ +E      +  S+GP   +TIS G+A       +  +  
Sbjct: 316 VLLYDSEEGNTLAIAERLRQAVEALGIEHLGSSAGPC--LTISLGVAYSTSGMGLDALYR 373

Query: 239 RADQALYVAKKSGRNRV 255
            AD+ALY AK +GRN V
Sbjct: 374 EADRALYEAKDAGRNAV 390


>gi|113968915|ref|YP_732708.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|117919023|ref|YP_868215.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|113883599|gb|ABI37651.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|117611355|gb|ABK46809.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 324

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 86/170 (50%), Gaps = 9/170 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +L  +  ++ +LS+ D L+ L N   +   L         Y+   S+V  DID+FK+IND
Sbjct: 144 QLKAANEQLERLSQTDGLTQLHNRRHWQQCLEHEFDLHARYSGMSSLVMIDIDHFKRIND 203

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GDKVI  ++  L         VGR GGEEFA     +   +A      LR+ I 
Sbjct: 204 TYGHVAGDKVIQHIAHILSHSLRETDCVGRYGGEEFAVVMPNTCGADALNFTERLRERIA 263

Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
           +S I +  G  I +T+S G+ E   H    S  I  +D+ALY AK+ GRN
Sbjct: 264 DSTI-VYEGLKIKVTVSLGVCEIGKHITSSSGWISCSDKALYEAKQKGRN 312


>gi|332561061|ref|ZP_08415379.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhodobacter sphaeroides WS8N]
 gi|332274859|gb|EGJ20175.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhodobacter sphaeroides WS8N]
          Length = 878

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 6/171 (3%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           S  R+ + +  D L+GL N  A   ++ +        ++V  D+D FK +ND   H  GD
Sbjct: 446 SAERLRRQAAEDPLTGLANRRALADAVETRLTEAAPFALVMLDLDNFKAVNDLQRHDTGD 505

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+   +D+L  V G    V R+GG+EF   A G+    A  LA  LR  I ++ I +  
Sbjct: 506 AVLRIAADRLRAVAGADCLVARMGGDEFMVLAPGTDAASAPRLAEALRAAI-SAPIEVGR 564

Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            P +H+  SAGIA    H   ++ ++  AD AL+ AK++GRNR V  S  +
Sbjct: 565 QP-VHLAASAGIALHPDHGTSMALLMTGADIALHAAKRAGRNRSVLLSQAQ 614


>gi|288961767|ref|YP_003452077.1| two-component response regulator, modulated diguanylate cyclase
           [Azospirillum sp. B510]
 gi|288914047|dbj|BAI75533.1| two-component response regulator, modulated diguanylate cyclase
           [Azospirillum sp. B510]
          Length = 498

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 101/208 (48%), Gaps = 19/208 (9%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISS 121
           E   L+++   ++   G ++G I     I+  R     + +L+  D LSG  N    +  
Sbjct: 288 EPRELLVVKRPLTASDGEVTGVIGIATDITERRRMEHELHRLATTDPLSGAHNRRHILDL 347

Query: 122 L--------GSYNEKLSI-----VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
           L        G    + ++     +  DID+FK+IND+ GH  GD  I    +++      
Sbjct: 348 LDRLLTGQGGGAETRQTVGAACLIMLDIDHFKRINDDLGHAAGDVAIRSTVEEIRNHLRA 407

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-R 227
              +GR+GGEEFA     +S  + A++A  LRK +    I +S G    +T S G+ E R
Sbjct: 408 TDQIGRIGGEEFAILLPETSGTDGAVIAERLRKGLAALVIVLSDGRRFQMTGSFGLTEVR 467

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRV 255
              + + +++ RADQALY AK  GRNRV
Sbjct: 468 PLGDTVESVLGRADQALYRAKALGRNRV 495


>gi|94314500|ref|YP_587709.1| diguanylate cyclase (GGDEF) domain-containing protein [Cupriavidus
           metallidurans CH34]
 gi|93358352|gb|ABF12440.1| conserved hypothetical protein [Cupriavidus metallidurans CH34]
          Length = 548

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 9/160 (5%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+G+ N   F       ++       ++ ++  D+D FKQ ND +GHP GD+ +  +
Sbjct: 377 VDALTGIPNRRYFQRESHAAVTRAYERGTEIGLLILDVDLFKQFNDLYGHPRGDECLRQV 436

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIH 217
           +  L  V     F  RLGGEEFA     S+ +E   +A  +   +    I     P    
Sbjct: 437 ATALTCVLDGTQFCARLGGEEFAVVLPDSTSEETRTIARRMVAAVRELGIPHHGTPVQPF 496

Query: 218 ITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
           +TIS G        P +  +++RAD A+Y AK++GRNR V
Sbjct: 497 VTISVGAVCAVPDAPRLEPLLHRADSAMYRAKRAGRNRYV 536


>gi|28897128|ref|NP_796733.1| putative sensory box/GGDEF family protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260361701|ref|ZP_05774728.1| PAS domain protein [Vibrio parahaemolyticus K5030]
 gi|260878040|ref|ZP_05890395.1| sensory box/GGDEF family protein [Vibrio parahaemolyticus AN-5034]
 gi|260896935|ref|ZP_05905431.1| sensory box/GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|28805337|dbj|BAC58617.1| putative sensory box/GGDEF family protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308088738|gb|EFO38433.1| sensory box/GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|308090088|gb|EFO39783.1| sensory box/GGDEF family protein [Vibrio parahaemolyticus AN-5034]
 gi|308115493|gb|EFO53033.1| PAS domain protein [Vibrio parahaemolyticus K5030]
          Length = 626

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 21/172 (12%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHP 149
           ++  LS  D L+GL N   F   L  Y              +  FDID+FK+IND  GH 
Sbjct: 460 QLRNLSEKDGLTGLWNRRKFEEQLTHYANIVERYPDTPTTCLALFDIDHFKRINDERGHD 519

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GDKVI  +++ L+    T  FV R+GGEEFA     ++ +EA ++ N LR       + 
Sbjct: 520 EGDKVICSVAETLLREVRTTDFVSRVGGEEFAVIMPHTTVKEAEVVLNRLR-------VA 572

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VCFS 259
           +    ++ +T+SAG ++       S   Y+ AD ALY +K +GRN V +C S
Sbjct: 573 VQLRSNMTVTVSAGYSDLTADRTRS---YKCADIALYESKSAGRNCVSLCHS 621


>gi|126463806|ref|YP_001044919.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhodobacter sphaeroides ATCC 17029]
 gi|126105617|gb|ABN78147.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 878

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 6/171 (3%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           S  R+ + +  D L+GL N  A   ++ +        ++V  D+D FK +ND   H  GD
Sbjct: 446 SAERLRRQAAEDPLTGLANRRALADAVETRLTEAAPFALVMLDLDNFKAVNDLQRHDTGD 505

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+   +D+L  V G    V R+GG+EF   A G+    A  LA  LR  I ++ I +  
Sbjct: 506 AVLRIAADRLRAVAGADCLVARMGGDEFMVLAPGTDAASAPRLAEALRAAI-SAPIEVGR 564

Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            P +H+  SAGIA    H   ++ ++  AD AL+ AK++GRNR V  S  +
Sbjct: 565 QP-VHLAASAGIALHPDHGTSMALLMTGADIALHAAKRAGRNRSVLLSQAQ 614


>gi|298247691|ref|ZP_06971496.1| diguanylate cyclase [Ktedonobacter racemifer DSM 44963]
 gi|297550350|gb|EFH84216.1| diguanylate cyclase [Ktedonobacter racemifer DSM 44963]
          Length = 553

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 11/204 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------ 123
           S++I+ I   +L  +   ++ ++L     ++  L+  D L+G+ NH   ++ L       
Sbjct: 344 SILIVLILRQVLATHELNNLKRDLQEKNAQLDTLAASDPLTGVSNHRTLVTRLDEEVARA 403

Query: 124 -SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
            +     S++F DID+FK IND +GH  GD V+  ++ ++  +  +   +GR GGEEF A
Sbjct: 404 KAQQAPCSVLFMDIDHFKAINDQYGHSTGDLVLCQVARRVASILRSEDCLGRWGGEEFLA 463

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRAD 241
              G     A  +A  +R  ++  Q  ++S  ++ +T S GIA           +I  AD
Sbjct: 464 VLPGQDLCSAYEVAEMIR--MQVLQQVVASEKNLRVTCSLGIATYPQTAASRDGLINAAD 521

Query: 242 QALYVAKKSGRNRVVCFSDIENNT 265
           QA+Y AK+ GRN+  C + ++ +T
Sbjct: 522 QAMYEAKRLGRNQ-TCLAKLKKDT 544


>gi|119484393|ref|ZP_01619010.1| hypothetical protein L8106_01707 [Lyngbya sp. PCC 8106]
 gi|119457867|gb|EAW38990.1| hypothetical protein L8106_01707 [Lyngbya sp. PCC 8106]
          Length = 466

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 133/258 (51%), Gaps = 23/258 (8%)

Query: 19  LESFSPHTFMIYFSIFFSIFIA-TVIFIANIFLFYIGLT----PFYGLEYILVENLSLVI 73
           L +F  + F+++  + F    A T IFI + F  + G+T    PF  +   L+  L LV 
Sbjct: 214 LPAFLVYPFLVWAPLRFETRGASTAIFIISGFALF-GVTHQVGPF--ISPSLLNTLILVW 270

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YN 126
           + + ++ ++  +  + + EL  + + + QL+  D L+GL N    +  L         YN
Sbjct: 271 LFVNVAAIVSLVLAASIGELKTAKHYLEQLALHDSLTGLDNRLLLMEKLAESLATVQRYN 330

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
            + +I++ D+D FK IND FGH  GD V+  ++ +L         V RLGG+EF      
Sbjct: 331 TQSAIIYLDLDGFKPINDTFGHEAGDFVLIEVAKRLRSCVREVDTVARLGGDEFVVLLHN 390

Query: 187 SSEQEAAILANDLRKIIE--NSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQ 242
            S+ +      D  +I+E  N+ IN+  G ++++ +S GIA   +  K P   ++  AD+
Sbjct: 391 LSDTDTVQQIAD--RIVETINASINL-FGTTVNVGVSMGIALIPQDGKYP-HQLLKNADK 446

Query: 243 ALYVAKKSGRNRVVCFSD 260
           A+Y+AK+ G+N+   FS+
Sbjct: 447 AMYLAKQQGKNQYQFFSE 464


>gi|107026991|ref|YP_624502.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
 gi|116691812|ref|YP_837345.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
 gi|105896365|gb|ABF79529.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
 gi|116649812|gb|ABK10452.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
          Length = 510

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 9/176 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           LK    +  ++ +L+  D L+GL N   F + L    ++       LS++F D+D+FK  
Sbjct: 326 LKRRQEAEAKLYRLAHTDSLTGLDNRGTFDTVLAKETQRASRSGRPLSVLFVDVDHFKAF 385

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GHP GD V+  ++  L          V R GGEEF      +    AA +A  +R+
Sbjct: 386 NDYYGHPAGDDVLRQVAQSLSRCLRRDSDHVARYGGEEFVVTLPDTDGPGAATVAEGIRR 445

Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
            I    I         +T+S G A     +   +T++ RAD+ALY AK  GRNRV+
Sbjct: 446 AIAELGIEHVKSQYGRVTVSIGTATADDGRMNAATLLRRADEALYRAKSGGRNRVL 501


>gi|323499312|ref|ZP_08104289.1| sensory box/GGDEF family protein [Vibrio sinaloensis DSM 21326]
 gi|323315700|gb|EGA68734.1| sensory box/GGDEF family protein [Vibrio sinaloensis DSM 21326]
          Length = 303

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 81/164 (49%), Gaps = 11/164 (6%)

Query: 99  RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++++L+  D L+ L N        S+  +     N  LS +  DID+FKQIND  GH  G
Sbjct: 139 QLAELANTDELTKLCNRRKLWQFFSSAFNRATQDNHPLSCILIDIDFFKQINDCHGHDFG 198

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+VI  L+D +          GR+GGEEF      +   EA  +A  LR    NS +N  
Sbjct: 199 DQVIVELADMIRHNLRETDCCGRIGGEEFLIVLDHTHATEAFDIAERLRLAFHNSPLNKP 258

Query: 212 SGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNR 254
             P    +IS G+ E    +     +Y RADQALY AK  GRN+
Sbjct: 259 KAP---FSISCGVTELVDNDGDFFALYRRADQALYDAKHKGRNQ 299


>gi|301018607|ref|ZP_07182959.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
 gi|300399649|gb|EFJ83187.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
          Length = 303

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S            L ++  DID FK +ND +GH +GD V+  L
Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      ++++EA      + ++++N  I  S G  I+I
Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGIRICQLVDNHAITHSEG-HINI 247

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291


>gi|222033280|emb|CAP76020.1| Uncharacterized protein ydeH [Escherichia coli LF82]
 gi|312946119|gb|ADR26946.1| hypothetical protein NRG857_07610 [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 296

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 2/135 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L ++  DID FK +ND +GH +GD V+  L+  L         V R GGEEF      ++
Sbjct: 159 LYLMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVYRYGGEEFIIIVKAAN 218

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           ++EA      + ++++N  I  S G  I+IT++AG++    +EP+  +I RAD+A+Y  K
Sbjct: 219 DEEACRAGVRICQLVDNHAITHSEG-HINITVTAGVSRAFPEEPLDVVIGRADRAMYEGK 277

Query: 249 KSGRNRVVCFSDIEN 263
           ++GRNR + F D +N
Sbjct: 278 QTGRNRCM-FIDEQN 291


>gi|149928083|ref|ZP_01916330.1| GGDEF domain [Limnobacter sp. MED105]
 gi|149823169|gb|EDM82406.1| GGDEF domain [Limnobacter sp. MED105]
          Length = 347

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 96/198 (48%), Gaps = 19/198 (9%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SA 117
           L+  L ++I S+    L  +   ++ K   +    +S  +  D L+GLLN        SA
Sbjct: 153 LILTLVVLIHSVGFVSLTLWRQSTLRKRFAVELLHLSNQACSDPLTGLLNRRGWQDMSSA 212

Query: 118 FISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
           ++  +   N+ + S+   DIDYFKQ ND +GH  GD  +   ++ L   F     + R+G
Sbjct: 213 YLRRMQRENQLQGSVAIIDIDYFKQYNDTYGHEAGDIRLREFAETLRTNFRPGDLIARVG 272

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236
           GEEFA      +       A+D ++I++  ++N        +  SAGI +  H + I   
Sbjct: 273 GEEFAVLLPNCT-------ADDTQRIVDRIRLN----GCCKVGFSAGICDISHTDSIDRT 321

Query: 237 IYRADQALYVAKKSGRNR 254
           + +AD ALY AK  GRNR
Sbjct: 322 MAQADHALYQAKNKGRNR 339


>gi|307720381|ref|YP_003891521.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978474|gb|ADN08509.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica
           DSM 16294]
          Length = 519

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 83/177 (46%), Gaps = 11/177 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           +G  + E  +   ++ +L+ ID L+G+ N   F       I     Y   LS++ FD+D 
Sbjct: 344 TGKDVTEQMLLEEKLRELAAIDKLTGISNRLRFDEVLQFSIDRAKRYKVNLSVILFDVDK 403

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++ND +GH  GD V+  ++            + R GG+EF          EA IL   
Sbjct: 404 FKKVNDTYGHLCGDDVLKMIAKIGHDSIRKSDLIARWGGDEFIILQSNIPSDEAQILVER 463

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           LR  IE+            +T+S G+      +   ++I RAD ALY AK+ GRNRV
Sbjct: 464 LRHNIESYNFKDVG----KVTVSFGVTHFKEDDTKESLIKRADDALYEAKEHGRNRV 516


>gi|300856234|ref|YP_003781218.1| putative response regulator [Clostridium ljungdahlii DSM 13528]
 gi|300436349|gb|ADK16116.1| predicted response regulator [Clostridium ljungdahlii DSM 13528]
          Length = 302

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 93/173 (53%), Gaps = 18/173 (10%)

Query: 98  NRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           N I++L  +D L+ + N         +  I SL + N+ LS++  DID+FK++ND +GH 
Sbjct: 135 NHINELIVLDPLTQVFNKRFIYERLPADIIKSLLN-NKPLSLIMADIDFFKKVNDIYGHV 193

Query: 150 VGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            GD+V+  ++  L   V     +  R GGEEF      +SE  A  +A  +RK IEN+ I
Sbjct: 194 AGDEVLKVIASILSASVRKDVDWTARYGGEEFIICLKNASEDTAVKVAEKMRKAIENTII 253

Query: 209 NISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           N   G SI +T S G+     E  ++E    +I   D+ LY AK +GRN+V+ 
Sbjct: 254 NY-EGASIKVTASFGVKTLFNENLNEED---LIKEVDKKLYEAKNAGRNKVIA 302


>gi|299771037|ref|YP_003733063.1| WspR [Acinetobacter sp. DR1]
 gi|298701125|gb|ADI91690.1| WspR [Acinetobacter sp. DR1]
          Length = 420

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 89/175 (50%), Gaps = 10/175 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           K L I  + +  LS+ D L+ + N   F      +          L+++F DID+FK  N
Sbjct: 235 KILRIEASELLHLSQQDALTKISNRRTFDEMFDFFYYRAKQEQRPLAVLFIDIDFFKNYN 294

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH +GDKVI+ ++  +        FV R GGEEF      +  Q A  +A ++ K I
Sbjct: 295 DFYGHQMGDKVISSIASAIKNSIRHVDFVARYGGEEFVVLLPKTPAQGAYAVAANIYKAI 354

Query: 204 ENSQI-NISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           E   I + +S  S H+TIS G  +     K     +I+ ADQALY AK+ GRN++
Sbjct: 355 ERQAIPHAASLVSTHVTISLGFTVYTEGLKVTQENLIHAADQALYRAKQLGRNQI 409


>gi|238928087|ref|ZP_04659847.1| GGDEF domain protein [Selenomonas flueggei ATCC 43531]
 gi|238884047|gb|EEQ47685.1| GGDEF domain protein [Selenomonas flueggei ATCC 43531]
          Length = 600

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 12/166 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGD 152
           + +   ID L+G+ N + F S++  +          LS+V FDID+FK IND +GH  GD
Sbjct: 401 VKKRMEIDPLTGVYNRNRFPSAISDFTRIAQNTGAPLSLVMFDIDHFKSINDTYGHDAGD 460

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+   +  +         + R GGEEF    L     +A   AN +R+ +  + +  + 
Sbjct: 461 EVLFGFAQTIRSFLDRRHILIRWGGEEFILLCLHYDGAKAQAFANQIREGVAKAWLLTAQ 520

Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                +T S GI       +  + ++ RAD ALY +K+ GRNR+ C
Sbjct: 521 ----QVTCSGGIGVWHGPDDDATALVKRADTALYASKEGGRNRISC 562


>gi|312880837|ref|ZP_07740637.1| diguanylate cyclase with extracellular sensor [Aminomonas
           paucivorans DSM 12260]
 gi|310784128|gb|EFQ24526.1| diguanylate cyclase with extracellular sensor [Aminomonas
           paucivorans DSM 12260]
          Length = 648

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 91/190 (47%), Gaps = 19/190 (10%)

Query: 86  SGSILKELFISYNRISQL----SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFF 134
           +G+ L +LF+    + +     ++ D L+G  N  AF  ++         Y   LS+V  
Sbjct: 449 AGASLIDLFLLRRDMEEQLLHQAQTDPLTGATNRRAFFEAVAREMHRSRRYGVPLSLVVL 508

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK++ND FGH  GD V+  L             +GRLGGEEF      +  +EA  
Sbjct: 509 DVDLFKRVNDRFGHDAGDTVLQRLVIAARNTLRQEDVLGRLGGEEFGILLPETPLKEACA 568

Query: 195 LANDLRKIIEN------SQINISSGPSIHITISAGIA-ERCHKEPISTIIY-RADQALYV 246
            A  +R  +EN      +      G    +T S G+A  R  K+  +  +Y RAD+ LY 
Sbjct: 569 AAERVRMAVENLRPLPSAPCPAGKGTEPRVTASFGVASHRPEKDEDAQSLYRRADKNLYR 628

Query: 247 AKKSGRNRVV 256
           AK +GRNR+V
Sbjct: 629 AKAAGRNRIV 638


>gi|310768330|gb|ADP13280.1| putative signal transduction protein [Erwinia sp. Ejp617]
          Length = 527

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 93/179 (51%), Gaps = 8/179 (4%)

Query: 85  ISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDY 138
           I  ++L  + + +++I +L   ++ D ++GLLN     + LG   S  +  +++  DID 
Sbjct: 334 IKRAMLAGIALVHDKIGRLKSEAQTDPMTGLLNRRGLDAVLGYFFSTKQPFAVLALDIDR 393

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND FGH  GD VI  ++ QL +       + R GGEEF     G+    A ++A  
Sbjct: 394 FKSVNDAFGHAAGDTVIKTVAHQLELGARQADVLCRNGGEEFLMLLPGADRDRALMVAER 453

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +RK IE  Q+ + +  ++ I+I          E +     +AD+ALY AK +GRN VV 
Sbjct: 454 VRKRIE--QLRMEAAGNVTISIGISFWSSDSGEDMHCAFGQADEALYRAKNAGRNCVVV 510


>gi|296135372|ref|YP_003642614.1| diguanylate cyclase/phosphodiesterase [Thiomonas intermedia K12]
 gi|295795494|gb|ADG30284.1| diguanylate cyclase/phosphodiesterase [Thiomonas intermedia K12]
          Length = 780

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 10/167 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GLLN       L   +++        ++V FD+D+FK IND FGH  GD V
Sbjct: 357 RLANQDSLTGLLNRRGMGEYLQRAHDRARDHGIGYALVLFDLDHFKLINDGFGHAAGDAV 416

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  L         V R GGEEF      SS Q A   A  LR++I ++++++  G 
Sbjct: 417 LQQVAHLLQTRVRKEDQVARWGGEEFLVLLPDSSLQTAHATAEKLRELISHTRMSV-GGA 475

Query: 215 SIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFS 259
            + +T S G++      P+++  ++ + D ALY AK  GRNRV  F 
Sbjct: 476 ELRLTASFGVSAWEPGGPLASAELLGQCDSALYNAKAGGRNRVKQFE 522


>gi|224826765|ref|ZP_03699865.1| diguanylate cyclase [Lutiella nitroferrum 2002]
 gi|224600985|gb|EEG07168.1| diguanylate cyclase [Lutiella nitroferrum 2002]
          Length = 515

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 85/170 (50%), Gaps = 7/170 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNF 146
           ++ +    NR  Q S  D L+GL N     S L  +    +  +++  DID+FK +ND++
Sbjct: 346 MRAMQQQLNRFRQESNTDALTGLGNRRELDSVLDDWKYSRQPFAVLMIDIDFFKSVNDSY 405

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+ +  L+  +         V R+GGEEF     G+    A  +A  L   +E  
Sbjct: 406 GHDTGDQALTALAQLMRDSAREGDVVCRMGGEEFVMLLPGADAIGAERVAERLCSRVEAY 465

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++      ++ I ++AGIA+    E    ++  AD ALY AK+ GRNRVV
Sbjct: 466 RVPGLPALTVSIGVAAGIAD----ETPEALLREADDALYQAKQQGRNRVV 511


>gi|221369404|ref|YP_002520500.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodobacter sphaeroides KD131]
 gi|221162456|gb|ACM03427.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodobacter sphaeroides KD131]
          Length = 881

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 6/171 (3%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           S  R+ + +  D L+GL N  A   ++ +        ++V  D+D FK +ND   H  GD
Sbjct: 449 SAERLRRQAAEDPLTGLANRRALADAVETRLTEAAPFALVMLDLDNFKAVNDLQRHDTGD 508

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+   +D+L  V G    V R+GG+EF   A G+    A  LA  LR  I ++ I +  
Sbjct: 509 AVLRIAADRLRAVAGADCLVARMGGDEFMVLAPGTDAASAPRLAEALRAAI-SAPIEVGR 567

Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            P +H+  SAGIA    H   ++ ++  AD AL+ AK++GRNR V  S  +
Sbjct: 568 QP-VHLAASAGIALHPEHGTSMALLMTGADIALHAAKRAGRNRSVLLSQAQ 617


>gi|77465404|ref|YP_354907.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides 2.4.1]
 gi|77389822|gb|ABA81006.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides 2.4.1]
          Length = 881

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 6/171 (3%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           S  R+ + +  D L+GL N  A   ++ +        ++V  D+D FK +ND   H  GD
Sbjct: 449 SAERLRRQAAEDPLTGLANRRALADAVETRLTEAAPFALVMLDLDNFKAVNDLQRHDTGD 508

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+   +D+L  V G    V R+GG+EF   A G+    A  LA  LR  I ++ I +  
Sbjct: 509 AVLRIAADRLRAVAGADCLVARMGGDEFMVLAPGTDAASAPRLAEALRAAI-SAPIEVGR 567

Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            P +H+  SAGIA    H   ++ ++  AD AL+ AK++GRNR V  S  +
Sbjct: 568 QP-VHLAASAGIALHPEHGTSMALLMTGADIALHAAKRAGRNRSVLLSQAQ 617


>gi|311696984|gb|ADP99857.1| membrane protein containing diguanylate cyclase, predicted domains
           [marine bacterium HP15]
          Length = 396

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 119/241 (49%), Gaps = 36/241 (14%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPF--YGL-EYILVENLSLVIISITISLLLGYISG 87
           F I  ++ +A V+ IA   +   G  P   +GL + ILV +L LV             S 
Sbjct: 163 FGIHGTLMMAQVLVIA---VSVTGSAPLDLHGLLKLILVNHLLLV-------------SA 206

Query: 88  SILKELFISYNRISQ----LSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136
           + +    +++ R  Q    L+  D L+ L N  AF        EK       ++++  D+
Sbjct: 207 TAMALPLLAFTRAEQALVALAERDGLTQLFNRRAFYREGNLAFEKAREDGSLITVLMIDL 266

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA--AI 194
           D+FKQIND +GH  GD+V+  +++ +         +GR+GGEEF AA L ++ +EA  A+
Sbjct: 267 DHFKQINDRWGHATGDEVLRIVANLMKAELRDDDIIGRVGGEEF-AAVLRNNNREAIEAV 325

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
               L++I+E  +     G  +H++ S G A         S ++  AD+ALY AK +GRN
Sbjct: 326 TGRLLQRIVEAGR--GVDGVPVHLSASIGGASLALEHAAFSDVMASADRALYQAKHNGRN 383

Query: 254 R 254
           R
Sbjct: 384 R 384


>gi|311108951|ref|YP_003981804.1| diguanylate cyclase [Achromobacter xylosoxidans A8]
 gi|310763640|gb|ADP19089.1| diguanylate cyclase, GGDEF domain protein 19 [Achromobacter
           xylosoxidans A8]
          Length = 533

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 10/172 (5%)

Query: 98  NRISQLSR---IDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            RI +LS     D ++GL+N       +++L    +  + +  D+D+FK +ND FGH  G
Sbjct: 357 RRIDKLSSDTITDPMTGLINRRGLALQVTALQRAQQPFAALALDLDHFKLVNDTFGHAAG 416

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  L+  L           R+GGEEF      +S   A  +A  +R    +  +   
Sbjct: 417 DQVLIALAGILRTCIRAEDAPCRVGGEEFLILMPDASRDTAGKVAERIRAATASQVMPQG 476

Query: 212 SGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            G    +T+S GIA     +P I  ++ +ADQALY AK SGR+RV  +S +E
Sbjct: 477 VG---QVTVSIGIALWPSDDPDIDKVLAKADQALYRAKHSGRDRVEAWSAVE 525


>gi|296124056|ref|YP_003631834.1| diguanylate cyclase [Planctomyces limnophilus DSM 3776]
 gi|296016396|gb|ADG69635.1| diguanylate cyclase [Planctomyces limnophilus DSM 3776]
          Length = 690

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 77/132 (58%), Gaps = 2/132 (1%)

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
           S NE  S++F D D+FK IND  GH VGD+V+  L+  L     +   +GR GGEEF   
Sbjct: 408 SQNEVFSVIFVDADHFKSINDKHGHTVGDQVLVELARLLQHESYSGEIIGRYGGEEFIVL 467

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              +  + A   +   R  I++  +  +  PS+ IT S G+++  + + +++++ RAD+A
Sbjct: 468 CPATDVELAVRKSERFRMSIQS--MRFADYPSLRITASFGVSQVVNGDTVASLVERADKA 525

Query: 244 LYVAKKSGRNRV 255
           LY AK++GRNR 
Sbjct: 526 LYQAKQTGRNRT 537


>gi|83312105|ref|YP_422369.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82946946|dbj|BAE51810.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Magnetospirillum magneticum AMB-1]
          Length = 562

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 11/157 (7%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +  L +        N KL +   D+D FK +ND +GHP GD+V+  L+
Sbjct: 400 DGLTGLFNHTFIVQYLDTALAAARRENGKLCVAMIDVDLFKSVNDTYGHPTGDQVLVALA 459

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L     T   +GR GGEEF       S +E   + N LR+  + +++   SG      
Sbjct: 460 RLLQQRLRTNDLIGRYGGEEFVVVMQNVSLKEGMTVMNGLRE--DFARLKFQSGDQFFSC 517

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T S GI+ R  +     +I  AD+ALY AK++GRNR+
Sbjct: 518 TFSGGIS-RFPEIAGDRLIEAADKALYEAKQAGRNRI 553


>gi|88860392|ref|ZP_01135030.1| cyclic nucleotide phosphodiesterase, putative [Pseudoalteromonas
           tunicata D2]
 gi|88817590|gb|EAR27407.1| cyclic nucleotide phosphodiesterase, putative [Pseudoalteromonas
           tunicata D2]
          Length = 618

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 101/195 (51%), Gaps = 17/195 (8%)

Query: 70  SLVIISITISLLLGYISGSILK--ELFISYNRISQLSR----IDCLSGLLNHSAFISSLG 123
           S+V + + I+++L   +  + K   L  + + ++Q++     ++CL+ L      I    
Sbjct: 430 SIVSLCLVITVVLALYARKVSKINHLRATTDELTQIANRRHILNCLNRL------IKGAN 483

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
              + L I   DIDYFK+INDNFGH  GD V+  ++            +GRLGGEEF   
Sbjct: 484 KTKQPLCIAMLDIDYFKKINDNFGHLAGDLVLVEVAQVAQSCLRKHDLMGRLGGEEFLFV 543

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA--GIAERCH-KEPISTIIYRA 240
              +++Q+A  +   +R  +    I I +  S H+T+S   GI+      E + ++I RA
Sbjct: 544 LPNTTQQQARTVCESIRNALHT--IAIDNDESGHLTVSGSFGISILSKADEKVESLIQRA 601

Query: 241 DQALYVAKKSGRNRV 255
           D ALY AK +GR+++
Sbjct: 602 DTALYQAKNNGRDQI 616


>gi|83746369|ref|ZP_00943421.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551]
 gi|207721977|ref|YP_002252415.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           MolK2]
 gi|207744678|ref|YP_002261070.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           IPO1609]
 gi|83726910|gb|EAP74036.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551]
 gi|206587150|emb|CAQ17734.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           MolK2]
 gi|206596085|emb|CAQ63012.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           IPO1609]
          Length = 457

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 104/197 (52%), Gaps = 12/197 (6%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-SYNE- 127
           S++   + + LL+  ++ ++ + LF +   + Q S  D L+G+ N S F      +++E 
Sbjct: 252 SMLAPGVLVCLLVWEVT-TLYRRLFEANVSLQQASTHDALTGIYNRSYFNEQFPRAFDEA 310

Query: 128 -----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFA 181
                  S++  D+D+FK+ ND FGH  GD  +  ++  L  V+     F+ R GGEEFA
Sbjct: 311 RRKAQPFSLLMIDVDHFKRYNDTFGHLKGDGCLVTIAAALEGVLRRRAGFIARYGGEEFA 370

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYR 239
                ++ ++A +LA   R+ + + +I   + PS ++TISAG A    +   S   +I  
Sbjct: 371 VVLPDATPRDALLLAESAREAVLHLRIEAPT-PSRYVTISAGCATAMPEASTSLEALIEA 429

Query: 240 ADQALYVAKKSGRNRVV 256
           AD  LY AK +GRN VV
Sbjct: 430 ADATLYRAKAAGRNLVV 446


>gi|89896138|ref|YP_519625.1| hypothetical protein DSY3392 [Desulfitobacterium hafniense Y51]
 gi|219670556|ref|YP_002460991.1| diguanylate cyclase with PAS/PAC sensor [Desulfitobacterium
           hafniense DCB-2]
 gi|89335586|dbj|BAE85181.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219540816|gb|ACL22555.1| diguanylate cyclase with PAS/PAC sensor [Desulfitobacterium
           hafniense DCB-2]
          Length = 331

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 10/173 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDID 137
           I+ +   EL  S +    L+R D L+  LN  AFI  L           E  +++  DID
Sbjct: 149 IAKNAEDELRKSRDNAEVLARTDYLTKTLNRRAFIERLQEELERTKRTQEGFAMILVDID 208

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           YFK++ND FGH  GD V+   +D L        F+GR GGEEF      +  ++AA++A 
Sbjct: 209 YFKKVNDQFGHLAGDYVLQKFADCLSNNVRPYDFIGRYGGEEFIICLPDTDVEQAALVAE 268

Query: 198 DLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAK 248
            +R+ +E  +++      I +T S G+A  +    + +  +I +AD A+YVAK
Sbjct: 269 RMRESVEALEVDYLHA-QIKVTGSFGVAVYDSHSSDTLDELIEKADGAMYVAK 320


>gi|118591123|ref|ZP_01548522.1| sensory box/response regulator [Stappia aggregata IAM 12614]
 gi|118436199|gb|EAV42841.1| sensory box/response regulator [Stappia aggregata IAM 12614]
          Length = 333

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 114/269 (42%), Gaps = 20/269 (7%)

Query: 6   KDFLSIWLCHEKNLESF--SPHTFMIYFSIF--FSIFIATVIFIANIFLFYIGLTPFYGL 61
           KD   I+    K  ESF   P   +   S++      +A V   A+  L   G    Y  
Sbjct: 63  KDRAGIYSGCNKAFESFIGLPANKVRGASVYDVAPEELAKVYEAADEELMQRGGVQIYEA 122

Query: 62  EYILVENLSLVII---SITISLLLGYISGSILKELFISYNRI--SQLSRI---DCLSGLL 113
           E    +     +    ++T   + G ++G     L I+  +    QL R    D L+   
Sbjct: 123 EVCYADGKYRTVTFHKAVTRDPVSGEVNGLAGSMLDITERKRLEEQLKRAAERDALTDAY 182

Query: 114 NHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N   F     S  ++       LSI+  D+D+FKQIND FGH  GD  +  +   L  V 
Sbjct: 183 NRRRFFELADSAEDRAKKTSASLSILVLDVDHFKQINDRFGHACGDAALNHIVGLLKNVL 242

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
             P    R GGEEF          +A  +A  +R  +E +  ++     I + +S G+A 
Sbjct: 243 QAPHIFARAGGEEFYCLLEECGLDDAFTIAERIRGAVETTP-HMHGEQVIPMRVSIGVAS 301

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRV 255
               E +S  I RAD ALY AK++GRNRV
Sbjct: 302 VADGEKVSQTIARADDALYCAKQAGRNRV 330


>gi|146309329|ref|YP_001189794.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas mendocina ymp]
 gi|145577530|gb|ABP87062.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas mendocina ymp]
          Length = 554

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 82/165 (49%), Gaps = 9/165 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LSR D L+GLL H      +            + S+V  DID+FK++ND  GH  GD VI
Sbjct: 392 LSR-DSLTGLLKHGDIKEQVAIELERALRSGARASVVMLDIDHFKRVNDEHGHAAGDNVI 450

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L++ L         +GR GGEEF A     + Q+A ++ +++R+     +  I+ G  
Sbjct: 451 RALANLLRQRLRRVDSLGRYGGEEFLAVLPDCTPQQARMILDEIRERFAELRF-IADGGE 509

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              T+SAGIA          +  RAD+ALY AK  GRN+V    D
Sbjct: 510 FSCTLSAGIAGTDVHSNAEQLRERADKALYAAKHGGRNQVQIADD 554


>gi|313201708|ref|YP_004040366.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688]
 gi|312441024|gb|ADQ85130.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688]
          Length = 783

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 97/199 (48%), Gaps = 24/199 (12%)

Query: 77  TISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           TI +L GY +   + ++   S   I + +  D L+GL N   F   L         + + 
Sbjct: 310 TIIVLRGYRLKREVARQAAASQKLIWKQANYDFLTGLPNRPMFHKQLAEEIHKSLQHQQP 369

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALG 186
           L ++F D+D FKQIND  GH +GDK++     ++  V      + RLGG+EF    + + 
Sbjct: 370 LVLMFLDLDNFKQINDQLGHSIGDKLLVETGARIAAVARDCTLLARLGGDEFTIVLSNVQ 429

Query: 187 SSEQEAAILANDLRKI-----IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRA 240
           + +Q   +    LR++     IEN          +++T S GIA    H   + T++  A
Sbjct: 430 NQQQVEWLCERILRQVSLPFTIENH--------VVYVTTSIGIASFPEHSRDVETLMKYA 481

Query: 241 DQALYVAKKSGRNRVVCFS 259
           DQA+Y AK+ GRNR   FS
Sbjct: 482 DQAMYEAKRLGRNRYQFFS 500


>gi|224826006|ref|ZP_03699109.1| diguanylate cyclase with PAS/PAC sensor [Lutiella nitroferrum 2002]
 gi|224601643|gb|EEG07823.1| diguanylate cyclase with PAS/PAC sensor [Lutiella nitroferrum 2002]
          Length = 650

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 11/167 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           QL R D L+G+ N      +L        +  + ++++  D D+FK+IND +GH  GD V
Sbjct: 473 QLVR-DPLTGVFNRRYLDDALPRVLAHTLALGKPVALLMLDADHFKRINDTYGHKAGDCV 531

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           ++ L  +L     +   V R GGEEF     G S + A   A  LRK+++   I      
Sbjct: 532 LSTLGARLRDSLRSNDMVCRYGGEEFLIVLPGMSLEHAIAKAEQLRKVVQQWPIEALDH- 590

Query: 215 SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++++T+S G+A    H E   ++++ AD ALYVAK SGR+R +C ++
Sbjct: 591 TLNVTVSIGVACSPLHAEDAESLVHAADTALYVAKSSGRDR-LCVAE 636


>gi|153213558|ref|ZP_01948848.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|124115894|gb|EAY34714.1| GGDEF family protein [Vibrio cholerae 1587]
          Length = 489

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 98/188 (52%), Gaps = 12/188 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSI 131
           + ++L+  +++G +L  L   ++R   +QL+  D ++GLLN     S L    +++ L+I
Sbjct: 306 LVVALVYLFLTG-VLIYLNTRWDRQHYAQLAARDPMTGLLNRRGMESFLKGKRHSQYLAI 364

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQ 190
              DID FKQIND +GH +GD+VI ++ +Q+     +   V R GGEEF         EQ
Sbjct: 365 AVLDIDDFKQINDAYGHDMGDRVICYIGEQIENHIRSSDAVARFGGEEFVVYVTAKEKEQ 424

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAK 248
              I+      +  +S + + SG     T+S GI   E         +   AD+ LYVAK
Sbjct: 425 ITRIMQRIFDAVCRDSPLILESG----FTVSGGIEVVESTTDRSFEDLFKAADEKLYVAK 480

Query: 249 KSGRNRVV 256
            SG+N++V
Sbjct: 481 TSGKNQLV 488


>gi|116695531|ref|YP_841107.1| putative GGDEF family protein [Ralstonia eutropha H16]
 gi|113530030|emb|CAJ96377.1| Putative GGDEF family protein [Ralstonia eutropha H16]
          Length = 601

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 6/178 (3%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF--ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           L+E      ++   +R D L+GLLN  A   +++  + ++  S+V  D+D FKQIND  G
Sbjct: 421 LRERASLTEQLEHQARTDSLTGLLNRRALELVAAQYAAHDSASLVLIDVDRFKQINDRHG 480

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+V+  ++  +  +      + R GGEEFA         EAA LA  LR  I +  
Sbjct: 481 HAAGDQVLRDIAAMMRALVPPEGVLARFGGEEFALLLPHGRPGEAAALAETLRAEIASRP 540

Query: 208 INISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           + +S    + +T S G+A  R  +     +   AD A+Y AK  GRN   C  + +  
Sbjct: 541 VFLSGSTQLCVTASFGVAIGRGGERHWQRLFGAADAAMYRAKAEGRN---CVREAQRE 595


>gi|301305873|ref|ZP_07211957.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|300838878|gb|EFK66638.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
          Length = 293

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 6/158 (3%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY---NEKLSI--VFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S        E L++  +  DID FK +ND +GH +GD V+  L
Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNTEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      ++++EA      + ++++N  I  S G  I+I
Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 247

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR +
Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM 285


>gi|194367772|ref|YP_002030382.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
 gi|194350576|gb|ACF53699.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
          Length = 426

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 110/236 (46%), Gaps = 40/236 (16%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI 100
           T + +A + L++  + P   L+ +L+  LS        +LLL  + G++L+E F      
Sbjct: 196 TAMLLALLCLWW--MLPRVFLQPVLLPALSCA------ALLL--VLGAMLQESF------ 239

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
             ++  D L+GL    AF  +L       SI   D+D+FK  ND  GH  GD V+  ++ 
Sbjct: 240 -HMAFRDELTGLPGRRAFNETLQRARGTYSIAMVDVDHFKSFNDTHGHDTGDDVLRLVAS 298

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---------- 210
           +L  V G      R GGEEFA   L             LR+ IE++++ +          
Sbjct: 299 RLAKV-GDGGRAFRYGGEEFAVVFLDRPAAACVDAVEALRQSIEDTRMQLRDRSTRSRDD 357

Query: 211 ----------SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
                      SG  + +T+S G+A+ R  + P + ++  ADQALY AK  GRN+V
Sbjct: 358 EAGRQQRGRGGSGQVVQVTVSIGLADSRVDQRP-TAVVKAADQALYAAKDGGRNQV 412


>gi|117618921|ref|YP_855815.1| response regulator PleD (Stalked cell
           differentiation-controllingprotein) [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117560328|gb|ABK37276.1| response regulator PleD (Stalked cell
           differentiation-controllingprotein) [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 379

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 12/171 (7%)

Query: 98  NRISQLSR---IDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFG 147
           N + QL R    D L+G++N    +  L      +       +++  D+D FK+IND FG
Sbjct: 191 NMLLQLYRESTTDELTGMMNRRLLMKQLEKARMSMIRKQAPFAVLLLDLDRFKRINDTFG 250

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENS 206
           H  GD V+  ++  L       M +GR GGEEFA      +E  +A  +A  LR  +E  
Sbjct: 251 HLAGDAVLKEVAATLAEQLEPGMVLGRYGGEEFAILLPNCAELAQAKRVAERLRVAVEAR 310

Query: 207 QI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            + + +S   + +T+S G+      E +  ++ RAD+ LY+AK +GRN VV
Sbjct: 311 LVKSPTSDELLEVTVSIGLTLALRGEGVEDLLNRADECLYMAKMAGRNCVV 361


>gi|90411613|ref|ZP_01219623.1| hypothetical GGDEF family protein [Photobacterium profundum 3TCK]
 gi|90327503|gb|EAS43856.1| hypothetical GGDEF family protein [Photobacterium profundum 3TCK]
          Length = 339

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 80/155 (51%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+G+LN  AF      Y   N  LS++  DID FK  NDNFGH +GD+V+  ++ +L 
Sbjct: 182 DALTGILNRRAFERDFQHYIENNTPLSLILLDIDKFKDFNDNFGHLMGDQVLKTIARRLK 241

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIH-ITIS 221
                     R GGEEFA       +  A   A   R+  E  S I+  +G  ++ IT S
Sbjct: 242 ESCRDYAQAYRFGGEEFAIILPHKMKASARQQAETFRRAFERISVIDKKTGQRVNSITAS 301

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+AE+   E    +I RAD  +  AK+ GRNRV+
Sbjct: 302 FGVAEKQPNESGECLIDRADTFMNQAKQLGRNRVL 336


>gi|120598163|ref|YP_962737.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|120558256|gb|ABM24183.1| diguanylate cyclase [Shewanella sp. W3-18-1]
          Length = 578

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 86/174 (49%), Gaps = 11/174 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  ++  D L+G  N     + +         +   LSIV FDID FKQ ND +GH +G
Sbjct: 400 QVKAMAETDGLTGCYNRRYLDNQIEKELLYANDHQVPLSIVMFDIDNFKQFNDRYGHVIG 459

Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D+ +  + +    +   P   + R GGEEF         ++A  +A  LR+ I + +I  
Sbjct: 460 DQCLKQIVNAAKSILQRPTDTLARYGGEEFMILLPSRHLEDAYKIAEHLRETIIDLKIPH 519

Query: 211 SSGPSIHI-TISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDI 261
              P   I TISAGI      EP+ T  +I RAD+ALY AK +GRNR     +I
Sbjct: 520 EDSPHAGIVTISAGITCWHPPEPLDTNSLIKRADEALYHAKLTGRNRTETLINI 573


>gi|262274946|ref|ZP_06052757.1| sensory box/GGDEF family protein [Grimontia hollisae CIP 101886]
 gi|262221509|gb|EEY72823.1| sensory box/GGDEF family protein [Grimontia hollisae CIP 101886]
          Length = 580

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 11/169 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +LS +D L+ + N  +F   L           E LS++F DIDYFK  NDN+GH  GD
Sbjct: 405 LEELSFVDGLTKVANRRSFDEQLVKMWHAHIREKEPLSLIFCDIDYFKPYNDNYGHQQGD 464

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           + +  ++D    V   P+  V R GGEEFA     ++E+   ++A ++ + ++ + I  +
Sbjct: 465 EALRQVADVFQRVTRRPLDAVARYGGEEFAILLPNTTEEGVLVVAQNIAEELQKAAIPHA 524

Query: 212 -SGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            S  +  IT+S GIA       +    ++  ADQALY AK +GRN++V 
Sbjct: 525 FSKVADRITLSQGIATLRPVAGQDYGDLVSLADQALYCAKNAGRNQIVS 573


>gi|134099798|ref|YP_001105459.1| diguanylate cyclase/phosphodiesterase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291005611|ref|ZP_06563584.1| diguanylate cyclase/phosphodiesterase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133912421|emb|CAM02534.1| diguanylate cyclase/phosphodiesterase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 516

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 109/237 (45%), Gaps = 30/237 (12%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           ++  ++ +   IAT +FIA   L  + LT F   E + V  + LVI     +LL      
Sbjct: 285 VVQLAVPYLPLIATALFIAAGLLAGLTLTRFQ--ECVFVALMGLVISRQLATLL------ 336

Query: 88  SILKELFISYNRISQLSRI----DCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYF 139
                     NR+ + +      D L+G+ N + F+     SL      + + F D+D F
Sbjct: 337 --------ENNRLLRRAEYEALHDPLTGVANRTLFLHWLERSLADCRRPIVLAFCDLDDF 388

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++NDNFGH  GD V+   + +L    G    V RLGG+EFA       E         L
Sbjct: 389 KEVNDNFGHAAGDLVLTSAARRLTRCAGADDLVARLGGDEFAVVLHNVHEPLEEAGQRLL 448

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRN 253
           R + E   +N   G  + ++ S G+      +P++   T++  AD A+YVAK+ G+N
Sbjct: 449 RALQEPHDLN---GRPLVVSASVGMTYLSPDQPVAGTDTLMRWADSAMYVAKRRGKN 502


>gi|116251496|ref|YP_767334.1| response regulator PleD [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256144|emb|CAK07225.1| putative two-component response regulator with GGDEF sensory box
           protein [Rhizobium leguminosarum bv. viciae 3841]
          Length = 457

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 11/176 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
            L  S  +  +L+  D L+GL N     + L        +    LS++  DID FK +ND
Sbjct: 280 RLRASVKQTIELAVTDPLTGLYNRRYLDNHLNVLFNRSMARGRPLSVLITDIDRFKHVND 339

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+   S+++           R GGEEF      +S + AA +A  LR  IE
Sbjct: 340 TYGHDGGDEVLREFSNRVRSTIRGADLACRYGGEEFVVVMPDTSPEIAAAVAERLRAAIE 399

Query: 205 NSQINIS-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
           N+   +  +G ++++T S GIA R      P   ++ +AD ALY AK +GRNRVV 
Sbjct: 400 NAPFMLKHAGEALNVTASFGIASRITSVLTP-DQLMKQADLALYEAKNTGRNRVVA 454


>gi|83593563|ref|YP_427315.1| response regulator receiver modulated diguanylate cyclase
           [Rhodospirillum rubrum ATCC 11170]
 gi|83576477|gb|ABC23028.1| response regulator receiver modulated diguanylate cyclase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 550

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 11/167 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           ++++ R D LS L  HS  +  L       G     LS    D+D+FK IN   GH  GD
Sbjct: 381 LAEMMRRDGLSRLFTHSTILDGLEREGARAGRTGAPLSFALLDLDHFKAINQTHGHATGD 440

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +VI  L+  +         +GR GGEEFA    G+  ++A  +  DLR +     +   +
Sbjct: 441 QVIVTLARVMRRALRGCDLLGRCGGEEFAVILPGTPAEQAVGVIEDLRALFRGQTLRAPT 500

Query: 213 GPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVV 256
           G  +  T SAG+A      P    + +   AD+AL  AK  GR+RVV
Sbjct: 501 G-EVRATFSAGVAGTPAGAPPLSATALFTAADKALAEAKARGRDRVV 546


>gi|52840485|ref|YP_094284.1| sensor histidine kinase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52627596|gb|AAU26337.1| sensor histidine kinase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 709

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 71/134 (52%), Gaps = 3/134 (2%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +I+  D+D+FK+IND FGH  GD V+  L   L           R GGEEF       + 
Sbjct: 575 AILMLDLDHFKKINDTFGHDAGDLVLKELGQILNNDIRLGDIAARYGGEEFVLLLYDINA 634

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247
           Q A + A +LR  I N Q+   + P   IT S GI+      K P + +I  AD+ALY A
Sbjct: 635 QAAKMKAENLRSAISNLQVKYGAQPVGQITASIGISVYPDDAKSP-AEVIEAADKALYQA 693

Query: 248 KKSGRNRVVCFSDI 261
           K  GRN+V+ FS+I
Sbjct: 694 KNKGRNKVILFSEI 707


>gi|54293235|ref|YP_125650.1| hypothetical protein lpl0283 [Legionella pneumophila str. Lens]
 gi|53753067|emb|CAH14514.1| hypothetical protein lpl0283 [Legionella pneumophila str. Lens]
          Length = 709

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 70/134 (52%), Gaps = 3/134 (2%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +I+  D+D+FK+IND FGH  GD V+  L   L           R GGEEF         
Sbjct: 575 AILMLDLDHFKKINDTFGHDAGDLVLKELGQILNSDIRLGDIAARYGGEEFVLLLYDIDA 634

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247
           Q A + A +LR  I N Q+   + P   IT S GI+      K P + +I  AD+ALY A
Sbjct: 635 QAAKMKAENLRSAISNLQVKYGAQPVGQITASIGISVYPDDAKSP-AEVIEAADKALYQA 693

Query: 248 KKSGRNRVVCFSDI 261
           K  GRN+V+ FS+I
Sbjct: 694 KNKGRNKVILFSEI 707


>gi|331683006|ref|ZP_08383614.1| putative GGDEF domain protein [Escherichia coli H299]
 gi|331079827|gb|EGI51017.1| putative GGDEF domain protein [Escherichia coli H299]
          Length = 298

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S            L ++  DID FK +ND +GH +GD V+  L
Sbjct: 131 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 190

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      ++++EA      + ++++N  I  S G  I+I
Sbjct: 191 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGIRICQLVDNHAIKHSEG-HINI 249

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 250 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 293


>gi|293405020|ref|ZP_06649012.1| hypothetical protein ECGG_00352 [Escherichia coli FVEC1412]
 gi|298380669|ref|ZP_06990268.1| ydeH protein [Escherichia coli FVEC1302]
 gi|291427228|gb|EFF00255.1| hypothetical protein ECGG_00352 [Escherichia coli FVEC1412]
 gi|298278111|gb|EFI19625.1| ydeH protein [Escherichia coli FVEC1302]
 gi|323964115|gb|EGB59602.1| GGDEF domain-containing protein [Escherichia coli M863]
          Length = 298

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S            L ++  DID FK +ND +GH +GD V+  L
Sbjct: 131 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 190

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      ++++EA      + ++++N  I  S G  I+I
Sbjct: 191 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGIRICQLVDNHAITHSEG-HINI 249

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 250 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 293


>gi|209548893|ref|YP_002280810.1| response regulator PleD [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534649|gb|ACI54584.1| response regulator receiver modulated diguanylate cyclase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 457

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 91/178 (51%), Gaps = 11/178 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
            L  S  +  +L+  D L+GL N     + L        +    LS++  DID FKQ+ND
Sbjct: 280 RLRASVKQTIELAVTDPLTGLYNRRYLDNHLNVLFNRSMARGRPLSVLITDIDRFKQVND 339

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+   ++++           R GGEEF      +S + AA +A  LR  +E
Sbjct: 340 TYGHDGGDEVLREFANRVRSTIRGADLACRYGGEEFVVVMPDTSPEIAAAVAERLRAAVE 399

Query: 205 NSQINIS-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           N+   +  +G ++++T S GIA R      P   ++ +AD ALY AK +GRNRVV  +
Sbjct: 400 NAPFLLKHAGEALNVTASFGIASRIGSVLTP-DQLMKQADLALYEAKNTGRNRVVAAA 456


>gi|220927155|ref|YP_002502457.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium nodulans ORS 2060]
 gi|219951762|gb|ACL62154.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium nodulans ORS 2060]
          Length = 457

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 97/194 (50%), Gaps = 16/194 (8%)

Query: 81  LLGYISGSILKELFISYNRIS-----QLSRIDCLSGLLNHSAFISSL-GSYNE------K 128
           L+  I   + ++ F    R S     +L+  D L+GL N   F S L G + E       
Sbjct: 264 LVARIRTQVRRKRFAHALRESVQASMELAVTDGLTGLHNRRYFDSHLAGLFREAVLRGRP 323

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           ++++  DID FK IND FGH  GD+V+   +D++         V R GGEE       + 
Sbjct: 324 IALLLLDIDRFKTINDGFGHDAGDEVLRQFADRIRAHTRGIDIVARFGGEEIVVVVPDAG 383

Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPI--STIIYRADQALY 245
              A  +A  +R+ IE +   I  G  +I +T+S G+A R H +    + ++ RAD ALY
Sbjct: 384 LDGAQQVAERIRERIEAAPFTIHGGTRTIDVTVSVGVAVR-HPDDAGPADLLKRADVALY 442

Query: 246 VAKKSGRNRVVCFS 259
            AK+ GRNRVV  +
Sbjct: 443 QAKQEGRNRVVAAA 456


>gi|118578561|ref|YP_899811.1| response regulator receiver modulated diguanylate cyclase
           [Pelobacter propionicus DSM 2379]
 gi|118501271|gb|ABK97753.1| response regulator receiver modulated diguanylate cyclase
           [Pelobacter propionicus DSM 2379]
          Length = 304

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 10/160 (6%)

Query: 104 SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+G+ N   FI+   +       +   LSI+  DID+FK +ND FGH  GD+V+ 
Sbjct: 142 ARTDHLTGIANRWEFINRFNTEKGRAERHGTPLSIIIADIDHFKSVNDTFGHNAGDRVLR 201

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPS 215
            +++ +          GR GGEEF      ++   AA +A  LR+ +  S+++I   G S
Sbjct: 202 SVANAISSSIRVEDACGRWGGEEFMLLLPDTNLDAAARVAEKLRQAV--SELSIPWEGES 259

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           I +T+S G+ +      +   I   D ALY AK  GRNRV
Sbjct: 260 IAVTLSMGVGQFRPGMTLDECIQPVDHALYRAKTGGRNRV 299


>gi|313110553|ref|ZP_07796438.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|310882940|gb|EFQ41534.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 401

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 95/197 (48%), Gaps = 16/197 (8%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ISSLG 123
            LV++  + +L   Y+     +E F+    +  ++  D L+GL+N   +          G
Sbjct: 199 GLVVLICSFAL---YLQDYAQREQFLGRRLLGMMAEQDSLTGLVNRRYYELLAQRALEQG 255

Query: 124 SYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFA 181
           +  EK ++++  D+D FK  ND++GHP GD  +  L   L      P+    RLGGEEFA
Sbjct: 256 AREEKGVALILVDVDDFKAYNDHYGHPAGDAALRQLGVVLRQGARRPLDIAARLGGEEFA 315

Query: 182 AAALGSSEQEAAILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEPISTIIY 238
                S E     +A  LR+ +E      +  S+GP   +TIS G+A       +  +  
Sbjct: 316 VLLYDSEEGNTLAIAERLRQAVEALGIEHLGSSAGPC--LTISLGVAYSTSGMGLDALYR 373

Query: 239 RADQALYVAKKSGRNRV 255
            AD+ALY AK +GRN V
Sbjct: 374 EADRALYEAKDAGRNAV 390


>gi|237811708|ref|YP_002896159.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346]
 gi|237504258|gb|ACQ96576.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346]
          Length = 466

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 9/177 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           +L+EL  +  ++  L+  D L+G  N   FI  + S            S++  D+D FK 
Sbjct: 290 VLQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFKT 349

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           INDN+GH VGD V+     Q +        + R+GGEEF           A+ +A  +R 
Sbjct: 350 INDNYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRT 409

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
            I N+   I  G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV 
Sbjct: 410 TIANASFGI-DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 465


>gi|218705019|ref|YP_002412538.1| hypothetical protein ECUMN_1803 [Escherichia coli UMN026]
 gi|293409883|ref|ZP_06653459.1| conserved hypothetical protein [Escherichia coli B354]
 gi|300897826|ref|ZP_07116216.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1]
 gi|218432116|emb|CAR13004.1| conserved hypothetical protein [Escherichia coli UMN026]
 gi|284921422|emb|CBG34490.1| putative signal transduction protein [Escherichia coli 042]
 gi|291470351|gb|EFF12835.1| conserved hypothetical protein [Escherichia coli B354]
 gi|300358455|gb|EFJ74325.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1]
 gi|327254193|gb|EGE65822.1| hypothetical protein ECSTEC7V_1624 [Escherichia coli STEC_7v]
          Length = 296

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S            L ++  DID FK +ND +GH +GD V+  L
Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      ++++EA      + ++++N  I  S G  I+I
Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGIRICQLVDNHAITHSEG-HINI 247

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291


>gi|254457006|ref|ZP_05070434.1| diguanylate cyclase with PAS/PAC sensor [Campylobacterales
           bacterium GD 1]
 gi|207085798|gb|EDZ63082.1| diguanylate cyclase with PAS/PAC sensor [Campylobacterales
           bacterium GD 1]
          Length = 598

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 91/178 (51%), Gaps = 11/178 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDID 137
           IS + ++       RI +LS  D L+ L N        +  +++ G YN   S++  DID
Sbjct: 420 ISYTAIRHDITDKKRIEELSITDRLTQLYNRLKLDEIFAMKLATAGRYNTNFSVIIIDID 479

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           YFK +ND +GH  GD V+   ++ +         VGR GGEEF   +  +    A  L+ 
Sbjct: 480 YFKLVNDTWGHQAGDDVLREFAEIIKNNARETDIVGRWGGEEFLILSSDTDLDGAIKLSE 539

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            LR+++  S  N S     + T S G++     +   T++ RAD+ALY AK++GRNRV
Sbjct: 540 KLREMV--SLFNFSFAG--YKTASFGVSSYHPGDDEKTMVKRADEALYRAKENGRNRV 593


>gi|77361562|ref|YP_341137.1| hypothetical protein PSHAa2647 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876473|emb|CAI87695.1| conserved protein of unknown function with GGDEF domain
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 368

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 102/210 (48%), Gaps = 28/210 (13%)

Query: 74  ISITISLLLGYISGSIL---------KELFISYNRIS-------QLSRIDCLSGLLNHSA 117
           I+I +S L  +I  SI          K  F +Y+ +S       QL+  D L+GL N   
Sbjct: 147 ITIGLSALFNFIEVSIAHVLLFRFYEKTRFSAYSHLSKRNAEIKQLAETDKLTGLYNRQK 206

Query: 118 F---ISSLGSYN---EKLSIVFF-DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           F   +S L S N    K +IV   DID+FK++ND +GH  GD V++  ++ L        
Sbjct: 207 FDFELSQLLSENNNERKSNIVMICDIDHFKKVNDTYGHLAGDNVLSEFANILQNKLTNSA 266

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            + R GGEEF      SS   A   A +LR  I    I+  +     +TIS GIA+    
Sbjct: 267 LIARWGGEEFTIILRDSSLDNAINEAEELRAFIATHLIDNRA-----LTISIGIAKAHVD 321

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +    ++ RAD+ALY AK  GR++V   SD
Sbjct: 322 DTALHLLERADKALYKAKLQGRDQVCVASD 351


>gi|78059845|ref|YP_366420.1| diguanylate cyclase [Burkholderia sp. 383]
 gi|77964395|gb|ABB05776.1| diguanylate cyclase (GGDEF domain) [Burkholderia sp. 383]
          Length = 467

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 8/176 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L+ L  +  ++  L+  D L+G  N   FI S+ +            S++  D+D+FK I
Sbjct: 291 LQALQRTNEKLEHLAATDPLTGATNRRQFIESVEAEIHRAKRNGAPFSLLALDLDHFKAI 350

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND++GH  GD+V+    D+ V        V R+GGEEF      ++   A  +   +R  
Sbjct: 351 NDSYGHQAGDQVLQRFVDKCVDAIRPYDGVARVGGEEFMVLLPQAALDTAQSIGERIRAA 410

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           I  +      G  I +T+S G +E     E I  I+ +AD+ LY AK  GRN+VV 
Sbjct: 411 IAGAPFEAGIGEPIKVTVSVGASEFGRDGETIDAILRKADERLYRAKHLGRNQVVA 466


>gi|21233187|ref|NP_639104.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66770127|ref|YP_244889.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188993335|ref|YP_001905345.1| diguanylate cyclase domain protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21115037|gb|AAM43016.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575459|gb|AAY50869.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167735095|emb|CAP53307.1| diguanylate cyclase domain protein [Xanthomonas campestris pv.
           campestris]
          Length = 483

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 17/169 (10%)

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GL N   F       + ++       S++  D+DYFKQ ND +GHP GD+ + 
Sbjct: 312 ARNDHLTGLANRRGFDRAFERLLPAVRDGTRGASVLMLDVDYFKQYNDRYGHPQGDQCLR 371

Query: 157 FLSDQL--VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
            ++  L  VV  G  + V R GGEEFA     +    AA +A  L++ +    I+ +  P
Sbjct: 372 DIAAALRSVVTRGEDV-VARYGGEEFALLLPDTDLPGAAEVARRLQERLAAMPISHAGSP 430

Query: 215 SIHITISAGI----AERCHKEPI---STIIYRADQALYVAKKSGRNRVV 256
              IT+S G+     + C  +       ++ RAD+ALY AK  GRNRV 
Sbjct: 431 CARITVSIGVTALQPQECQVQDARVREAVMARADRALYQAKNQGRNRVA 479


>gi|330505540|ref|YP_004382409.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas mendocina NK-01]
 gi|328919826|gb|AEB60657.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas mendocina NK-01]
          Length = 558

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 81/160 (50%), Gaps = 9/160 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LSR D L+GLL H      +           ++ S+V  DID+FK++ND  GH  GD VI
Sbjct: 391 LSR-DSLTGLLKHGDIKEQVAIELERALRTGDRASVVMLDIDHFKRVNDEHGHAAGDNVI 449

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L++ L         +GR GGEEF A     + Q+A  + +++R+     +  I+ G  
Sbjct: 450 RALANLLRQRLRRIDSLGRYGGEEFLAVLPDCTPQQAKQIVDEIRERFAELRF-IADGGE 508

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              T+SAG+A          +  RAD+ALY AK  GRN+V
Sbjct: 509 FSCTLSAGVAGTDVHSQAEQLRERADKALYAAKHGGRNQV 548


>gi|330502303|ref|YP_004379172.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328916589|gb|AEB57420.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 489

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 8/165 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            RI+ L+  D L+ L N   F       +      +  L  V  D+D FKQIND  GH  
Sbjct: 322 QRIAALATTDSLTNLPNRRGFELHVEQALQEAQRDSSPLCAVMLDLDNFKQINDRHGHLA 381

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+   +++L         + R GGEEF      +    A  LA  LR+   + +  +
Sbjct: 382 GDEVLRSFAERLRAALRQSDILCRWGGEEFILLLKNTDRHAAHELAEKLRQHCADQRYPM 441

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             G ++ +T+S G+++    E +  ++ R D+ALY AK++GR+RV
Sbjct: 442 -DGEALQVTVSLGLSQWQPGEALHDLLSRTDRALYRAKQAGRDRV 485


>gi|268679957|ref|YP_003304388.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617988|gb|ACZ12353.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 259

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 10/168 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148
           SY +I +LS  D L+ L N   F++      +K       L +V  D+D FK INDNFGH
Sbjct: 86  SYLQIEELSHFDGLTKLYNRLMFVTLFQKEIQKVKRSKKCLFLVIIDLDDFKSINDNFGH 145

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD  I   +  L  +      +GR GG+EF    +   +  A+   N +        +
Sbjct: 146 LIGDLAIKTTASTLKTILRNSDTIGRFGGDEFVICIVDHDKDAASHTVNRILNEFNQKSL 205

Query: 209 NISSGPS---IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            I+       +HI +S G      ++  +T++ RADQALY++K++G+N
Sbjct: 206 PITRNDQPHELHINLSIGYTMYKIEDDFTTMLQRADQALYISKEAGKN 253


>gi|207728382|ref|YP_002256776.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           MolK2]
 gi|206591628|emb|CAQ57240.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           MolK2]
          Length = 461

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 12/199 (6%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125
           LV++   ++L + Y+    L+       R ++L+  D L+GL N  A    L +      
Sbjct: 263 LVVLFNVVTLAMAYLFAQHLERRIEEQRRHAELAATDALTGLANRRALDERLDAEWRRAA 322

Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAA 182
              + LS++  D+D+FK  ND +GHP GD  +  ++  +      P     R GGEEF  
Sbjct: 323 RERQPLSVLMIDVDHFKAYNDQYGHPDGDVALQAVARCIQANLRRPGDLAARYGGEEFCV 382

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE----RCHKEPISTIIY 238
              GS    A ++A  +R  I+   I  +   +  +T+S G A        ++  +T+  
Sbjct: 383 VLPGSDLGSANVVAETIRHAIQALDIPHARSDAAVLTVSIGAASGTPAASGEQRTATLTK 442

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD  LY AK SGRNR V 
Sbjct: 443 AADAQLYRAKTSGRNRTVA 461


>gi|119947315|ref|YP_944995.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
 gi|119865919|gb|ABM05396.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
          Length = 727

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 96/174 (55%), Gaps = 24/174 (13%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148
           +  ++++L++ DCL+GL N + F S L            KL+++F D+D FKQ+ND+ GH
Sbjct: 267 TEQQLTRLAQYDCLTGLPNRALFTSLLSQAISRSDRRKNKLALLFLDLDRFKQVNDSLGH 326

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIE-- 204
            VGD ++  ++ +L +       V RLGG+EF      + S   +AA LA   +K+I   
Sbjct: 327 DVGDLLLQQVAQRLQLATLEGGTVSRLGGDEFMVILEEVNSESHKAAKLA---QKMITSL 383

Query: 205 NSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRN 253
           ++  NI  G  + I+ S GIA      +C    I +++ RAD A+Y AK+ GRN
Sbjct: 384 DAPFNI-LGREVLISTSIGIALCSGSTQC----IDSLLKRADMAMYRAKEQGRN 432


>gi|67643392|ref|ZP_00442138.1| diguanylate cyclase [Burkholderia mallei GB8 horse 4]
 gi|124384520|ref|YP_001026640.1| GGDEF domain-containing protein [Burkholderia mallei NCTC 10229]
 gi|126448347|ref|YP_001080078.1| GGDEF domain-containing protein [Burkholderia mallei NCTC 10247]
 gi|167893684|ref|ZP_02481086.1| diguanylate cyclase [Burkholderia pseudomallei 7894]
 gi|167910371|ref|ZP_02497462.1| diguanylate cyclase [Burkholderia pseudomallei 112]
 gi|254177876|ref|ZP_04884531.1| GGDEF domain protein [Burkholderia mallei ATCC 10399]
 gi|254197206|ref|ZP_04903628.1| diguanylate cyclase [Burkholderia pseudomallei S13]
 gi|254201642|ref|ZP_04908006.1| diguanylate cyclase [Burkholderia mallei FMH]
 gi|254206974|ref|ZP_04913325.1| diguanylate cyclase [Burkholderia mallei JHU]
 gi|254261114|ref|ZP_04952168.1| diguanylate cyclase [Burkholderia pseudomallei 1710a]
 gi|254358890|ref|ZP_04975163.1| diguanylate cyclase [Burkholderia mallei 2002721280]
 gi|124292540|gb|ABN01809.1| diguanylate cyclase (GGDEF) domain protein [Burkholderia mallei
           NCTC 10229]
 gi|126241217|gb|ABO04310.1| diguanylate cyclase (GGDEF) domain protein [Burkholderia mallei
           NCTC 10247]
 gi|147747536|gb|EDK54612.1| diguanylate cyclase [Burkholderia mallei FMH]
 gi|147752516|gb|EDK59582.1| diguanylate cyclase [Burkholderia mallei JHU]
 gi|148028017|gb|EDK86038.1| diguanylate cyclase [Burkholderia mallei 2002721280]
 gi|160698915|gb|EDP88885.1| GGDEF domain protein [Burkholderia mallei ATCC 10399]
 gi|169653947|gb|EDS86640.1| diguanylate cyclase [Burkholderia pseudomallei S13]
 gi|238524736|gb|EEP88167.1| diguanylate cyclase [Burkholderia mallei GB8 horse 4]
 gi|254219803|gb|EET09187.1| diguanylate cyclase [Burkholderia pseudomallei 1710a]
          Length = 454

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 9/177 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           +L+EL  +  ++  L+  D L+G  N   FI  + S            S++  D+D FK 
Sbjct: 278 VLQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFKT 337

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           INDN+GH VGD V+     Q +        + R+GGEEF           A+ +A  +R 
Sbjct: 338 INDNYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRT 397

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
            I N+   I  G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV 
Sbjct: 398 TIANASFGI-DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 453


>gi|320353862|ref|YP_004195201.1| PAS/PAC sensor-containing diguanylate cyclase and hemerythrin-like
           metal-binding domain-containing protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320122364|gb|ADW17910.1| diguanylate cyclase with PAS/PAC sensor and hemerythrin-like
           metal-binding domain protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 817

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/134 (36%), Positives = 75/134 (55%), Gaps = 6/134 (4%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           + + LS +  DID+FK+IND  GH +GD+V+  +S   + +  +     RLGGEEF    
Sbjct: 515 FKQPLSFLLVDIDWFKRINDAHGHDIGDEVLKTMSRACMGLLRSIDLFSRLGGEEFGILL 574

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI---IYRAD 241
           + +  +   + A  LR  +E  ++    GP I  T+S G+A     + + T+   I +AD
Sbjct: 575 VNTGREGGHVFAERLRHHLEQLEVACPGGP-IRFTVSIGLA--VSDDTVGTVNDLIKQAD 631

Query: 242 QALYVAKKSGRNRV 255
            ALYVAK +GRNRV
Sbjct: 632 LALYVAKANGRNRV 645


>gi|241762869|ref|ZP_04760932.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
 gi|241368044|gb|EER62249.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
          Length = 413

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 97/200 (48%), Gaps = 18/200 (9%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLG 123
           LV +  L+ +++ +SL       S++ E     NR +  L+  D L+ L+N   F   L 
Sbjct: 218 LVGSFLLLFVALNLSL------SSLVIEPMARLNRKLEDLATKDFLTDLVNRRRFFERLE 271

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
           +           LS+V FDID+FK+IND FGH  GD V+   + ++  +  +     R G
Sbjct: 272 AEMANTRIKKGSLSVVMFDIDFFKRINDTFGHDSGDVVLKHTALRVRELLRSSDCAARFG 331

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236
           GEEF      +    A  +A  +R  I  +  +       H++ S G+A   H+E    +
Sbjct: 332 GEEFIILLKETPLDAAMAMAEAVRARIAGAPFDAVG----HVSASFGVASWDHQEDSHAL 387

Query: 237 IYRADQALYVAKKSGRNRVV 256
           I RAD ALYVAK  GRN VV
Sbjct: 388 IKRADAALYVAKSRGRNCVV 407


>gi|310780162|ref|YP_003968494.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
 gi|309749485|gb|ADO84146.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
          Length = 540

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 8/162 (4%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G  N   F       +  +  Y+    ++  DID+FK+ ND +GH  GD V+    
Sbjct: 371 DFLTGSYNRKGFTKIANLELERMKRYDIDACVMMMDIDFFKKFNDTYGHACGDFVLRSFV 430

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +         +GR GGEEF      +  + A + A  +RK++E  ++      S++IT
Sbjct: 431 RVVTKNVRLSDIIGRWGGEEFLVLLPETDYKGALLAAEKVRKMVER-EVFYYHKQSLNIT 489

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           ++ G++    ++P+   +  AD A+Y  K+ GRNRVV F DI
Sbjct: 490 VTIGVSTLNVRKPLEKAVAEADAAMYRGKEDGRNRVVGFQDI 531


>gi|297538018|ref|YP_003673787.1| diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297257365|gb|ADI29210.1| diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301]
          Length = 710

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDK 153
           S+L+ +D L+ L N  A +  L +   +       L++ F D+D FKQIND  GH VGD 
Sbjct: 266 SRLALVDTLTQLPNRRALMQHLEAATRRCDRNGASLAVAFIDVDNFKQINDTLGHQVGDL 325

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINIS 211
            +  ++ +LV        V R+GG+EF A    + S E    ++   +  + E+  IN S
Sbjct: 326 ALQKVARRLVTAVRGCDEVARIGGDEFIAIIEEVDSYEDCITVIERMVSAVRESCTINHS 385

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
               +H++ISAG+A       I  +I  AD A+Y AKK G+N+
Sbjct: 386 ---EVHLSISAGVAIYPKDGNIQQLISAADTAMYRAKKDGKNQ 425


>gi|227113168|ref|ZP_03826824.1| putative signaling membrane protein [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 255

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 90/182 (49%), Gaps = 12/182 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           LGY++ +   +L      + ++S  D +S L N   +   L         Y    ++V F
Sbjct: 73  LGYVTYATALKLAEHKRMLMEVSIHDGMSSLYNRHHWERLLKHEYDICQRYKRTATLVLF 132

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK  NDNFGH VGD+ I  L+ +L   F     +GR GG+EFA     +S  EA  
Sbjct: 133 DIDHFKAFNDNFGHNVGDQAILLLARELTSGFRETDVIGRFGGDEFAVILPQTSAGEALD 192

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGR 252
             N +R+ +    +N +  P + + +S GIAE    E +  + +   AD ALY AK  GR
Sbjct: 193 AVNRIRESLSLKFLNQT--PQLAVFVSVGIAE-ISPEMVQYMDWLKAADMALYRAKNKGR 249

Query: 253 NR 254
            R
Sbjct: 250 RR 251


>gi|170721603|ref|YP_001749291.1| diguanylate cyclase [Pseudomonas putida W619]
 gi|169759606|gb|ACA72922.1| diguanylate cyclase [Pseudomonas putida W619]
          Length = 532

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 16/188 (8%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKL 129
           + +I  +LL G     +L+E F    ++ Q ++ D L+GL N  A    + +L   +   
Sbjct: 340 VAAIRRALLTGE---QLLQEKF---GKLRQQAQSDALTGLANRRAMQLALDALMQSSRAF 393

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID+FK++ND FGH  GD+V+  L++ L           R+GGEEF      +  
Sbjct: 394 AVLALDIDHFKRVNDTFGHDAGDEVLKHLAELLRHNSRQDDLPCRVGGEEFTMLLPDTGL 453

Query: 190 QEAAILANDLRKIIENSQINISSGPSI-HITISAGIA-ERCHKEPISTIIYRADQALYVA 247
            +A  +A  +R  +E      +  P +  +T+S G+A  R   +   +++ +AD+ LY A
Sbjct: 454 ADARRIAERIRSAVEQ-----ADSPHVGKLTVSIGVACRRPDTQQAGSVLKQADEQLYKA 508

Query: 248 KKSGRNRV 255
           K +GRNRV
Sbjct: 509 KHNGRNRV 516


>gi|326386387|ref|ZP_08208010.1| diguanylate cyclase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326209048|gb|EGD59842.1| diguanylate cyclase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 505

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+R D L+GL N    + ++ +        +   +++  D+D FK IND  GH VGD+V
Sbjct: 315 ELARRDPLTGLRNRRGLVEAVDAMIGQGEDEHSPFALLLVDVDKFKTINDTHGHEVGDQV 374

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  L+ +L    G    V R GGEEFA   +G S       A+ +R+ +         GP
Sbjct: 375 LCRLAGRLSRWDGAMCAVARFGGEEFAMVVVGLSGPVLTQFADRVRQEVA----ECDHGP 430

Query: 215 SIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++  +T+S GIAE        ++   AD+ALY AK++GRN V+
Sbjct: 431 ALRAVTVSIGIAEARGAADFQSLYRLADEALYRAKQAGRNCVM 473


>gi|294490786|gb|ADE89542.1| diguanylate cyclase [Escherichia coli IHE3034]
 gi|307626569|gb|ADN70873.1| putative diguanylate cyclase [Escherichia coli UM146]
 gi|323952448|gb|EGB48321.1| diguanylate cyclase domain-containing protein [Escherichia coli
           H252]
          Length = 558

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            +AA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 545 KQAGRNR-VCASD 556


>gi|288956938|ref|YP_003447279.1| GGDEF domain-containing protein [Azospirillum sp. B510]
 gi|288909246|dbj|BAI70735.1| GGDEF domain-containing protein [Azospirillum sp. B510]
          Length = 385

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 109/224 (48%), Gaps = 14/224 (6%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102
           +F A + LF     P+  LE+ +      ++ +  I++L+  I+         +  +++ 
Sbjct: 170 LFGAGVILFVADFVPWLALEFFVQ-----ILGNFAIAILIYNIATDR------AERKLAL 218

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF-DIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           ++ +D L+G+ N         S+      +F+ D+D+FK+IND FGH  GD V+  ++  
Sbjct: 219 MAELDSLTGIGNRRWLEKMAPSHLSPGDTIFYIDLDHFKRINDRFGHAAGDTVLVAVAAT 278

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L  +      + R+GGEEF          EA  +A  +R+ I+         P + +T S
Sbjct: 279 LRNLKRPEDVLARMGGEEFLLFLAELRVSEALTIAERIREAIQAIPFQYQGIP-LGVTAS 337

Query: 222 AGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            G+A+   + EP   +++ AD ALY AK  GRNRVV  S +  +
Sbjct: 338 IGVAQVSRQGEPWPELVHAADMALYEAKHGGRNRVVHASQVSQD 381


>gi|284046377|ref|YP_003396717.1| diguanylate cyclase [Conexibacter woesei DSM 14684]
 gi|283950598|gb|ADB53342.1| diguanylate cyclase [Conexibacter woesei DSM 14684]
          Length = 530

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 15/176 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFK 140
           S L+ L ++ +R    +  D L+GL N  A   +L       + +E+ L++V  D+D+FK
Sbjct: 343 SGLRTLALAQSR----AMTDALTGLPNRWALQDALKRMLAQAARSERPLALVLLDLDHFK 398

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND +GH  GD  +A + D L+          R GGEEFA     +S + A  +A  LR
Sbjct: 399 QLNDTYGHDAGDTALAAVGDALLTGLRESDMAARSGGEEFAVLLPDTSLEGAVAVAEQLR 458

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
             I    + +   P   +T S G+A    H      ++  AD+ALY AK++GRNRV
Sbjct: 459 AAIAAVDLPL---PGASLTASFGVAVLPLHAVDADGLMRVADRALYAAKRAGRNRV 511


>gi|261253438|ref|ZP_05946011.1| GGDEF family protein [Vibrio orientalis CIP 102891]
 gi|260936829|gb|EEX92818.1| GGDEF family protein [Vibrio orientalis CIP 102891]
          Length = 269

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 93/169 (55%), Gaps = 13/169 (7%)

Query: 95  ISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           + ++   +L+  D ++GLLN     AF+ ++  +N+ +++  FDID FK INDN+GH VG
Sbjct: 106 VEHDYFKELAAKDPMTGLLNRRGLKAFLKTV-QHNDYVALAVFDIDNFKAINDNYGHDVG 164

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D VI+ ++DQ+ +         R+GGEEF     G+   + A+L   + ++     I  +
Sbjct: 165 DVVISHVADQITINIRHSDVAARIGGEEFVIYMSGN---DKALLQKGMSRV--QQAIVAT 219

Query: 212 SGPSIH--ITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S  ++    TIS G  I  +  +    T+   AD+ LY AK +G++++V
Sbjct: 220 SADAVENGFTISGGVEIVTKSEERGFDTLFKAADEKLYQAKTTGKDKLV 268


>gi|260598464|ref|YP_003211035.1| putative diguanylate cyclase YedQ [Cronobacter turicensis z3032]
 gi|260217641|emb|CBA31947.1| Cellulose synthesis regulatory protein [Cronobacter turicensis
           z3032]
          Length = 524

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 16/163 (9%)

Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N  AF         +  +     S++  D+D+FK IND +GH  GDKV+ + +
Sbjct: 363 DTLTRLYNRGAFFERARLAAKTCDAQQAPFSVIQLDLDHFKSINDRYGHQAGDKVLTWAA 422

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L          GR+GGEEF     G+  + A  +A  +R+ I + +I +    +I I+
Sbjct: 423 GMLSRSLRAEDIAGRVGGEEFCIILPGTPSEGARQVAERIRQRINSQEILVRPDTTIRIS 482

Query: 220 ISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNRVVC 257
           +S GI+E         E + +I   AD+ LY+AK+ GRN +VC
Sbjct: 483 VSVGISEALRDGDYDFEHLQSI---ADRRLYLAKQRGRN-LVC 521


>gi|253999666|ref|YP_003051729.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4]
 gi|253986345|gb|ACT51202.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4]
          Length = 765

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 97/199 (48%), Gaps = 24/199 (12%)

Query: 77  TISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           TI +L GY +   + ++   S   I + +  D L+GL N   F   L         + + 
Sbjct: 292 TIIVLRGYRLKREVARQAAASQKLIWKQANYDFLTGLPNRPMFHKQLAEEIHKSLQHQQP 351

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALG 186
           L ++F D+D FKQIND  GH +GDK++     ++  V      + RLGG+EF    + + 
Sbjct: 352 LVLMFLDLDNFKQINDQLGHSIGDKLLVETGARIAAVARDCTLLARLGGDEFTIVLSNVQ 411

Query: 187 SSEQEAAILANDLRKI-----IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRA 240
           + +Q   +    LR++     IEN          +++T S GIA    H   + T++  A
Sbjct: 412 NQQQVEWLCERILRQVSLPFTIENH--------VVYVTTSIGIASFPEHSRDVETLMKYA 463

Query: 241 DQALYVAKKSGRNRVVCFS 259
           DQA+Y AK+ GRNR   FS
Sbjct: 464 DQAMYEAKRLGRNRYQFFS 482


>gi|94268924|ref|ZP_01291323.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451412|gb|EAT02262.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 333

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 96/184 (52%), Gaps = 20/184 (10%)

Query: 90  LKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
           LKE     NR +++LS  D L+GL N  +F  +L +   +       L+++  DID FKQ
Sbjct: 149 LKEQLEEANRKLNELSLTDGLTGLANRRSFQEALQTEWRRAMRNRHFLTLILADIDSFKQ 208

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILA 196
            ND +GH  GD  +     Q+  V  +P+      V R GGEEFA     +  +    LA
Sbjct: 209 FNDTYGHVAGDDCLV----QIAKVIKSPLMRSSDLVARYGGEEFAILLPDTDLKGGEHLA 264

Query: 197 NDLRKIIENSQIN-ISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRN 253
            ++R+ +E  +I+  +S    H+T+S G+A    +  +    ++  AD+ALY AK+ GRN
Sbjct: 265 EEIRREVEQLEIDHENSATGAHVTMSFGVASVVPRLDLVELDLVCAADKALYAAKEDGRN 324

Query: 254 RVVC 257
           +V+ 
Sbjct: 325 QVLT 328


>gi|15642917|ref|NP_227958.1| response regulator [Thermotoga maritima MSB8]
 gi|4980635|gb|AAD35236.1|AE001699_13 response regulator [Thermotoga maritima MSB8]
          Length = 450

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 88/166 (53%), Gaps = 24/166 (14%)

Query: 104 SRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           S  D L+GL N  A   F+  +    + +++   DID FK+IND FGHPVGD+V+  +++
Sbjct: 295 SETDGLTGLFNKRAIMRFLEEVLRSEKNIAVAMMDIDDFKKINDTFGHPVGDEVLRVVAN 354

Query: 161 QL--VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS------ 212
            L   V  G    VGR GGEEF      + E++A +      K ++N   NI +      
Sbjct: 355 ILRETVKIGK---VGRYGGEEF-MVVFETGERDAVV------KTMDNIMENIRNFDWQKI 404

Query: 213 -GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G    +T+S G+A  +    P+  +I  AD+ LY AK+SG++R V
Sbjct: 405 FGSEKKVTLSGGVAFSKKESSPVE-LIEEADKKLYTAKRSGKDRYV 449


>gi|325983256|ref|YP_004295658.1| diguanylate cyclase [Nitrosomonas sp. AL212]
 gi|325532775|gb|ADZ27496.1| diguanylate cyclase [Nitrosomonas sp. AL212]
          Length = 373

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 19/183 (10%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           ++  RI ++S  D L+   N   F       I+    +N+ L  +F D+D+FK+IND+ G
Sbjct: 190 LNQQRIKEISYQDALTQAYNRRYFDLRLKDEIARCIRWNDDLICMFLDVDHFKKINDSHG 249

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  +   +     +   V R GGEEF  A   ++   A  +A  LRK I +S 
Sbjct: 250 HQTGDSVLRHMVSLIKEQVRSCDIVARYGGEEFVVALPSTTLHAAHEIAERLRKAICSSA 309

Query: 208 INISSGPSIHITISAGIAERCHKEPI----------STIIYRADQALYVAKKSGRNRVVC 257
           I I     ++I++S G+A      P+          +T++ RAD+ALY AK+ GRN+VV 
Sbjct: 310 I-ILYDKQLNISVSIGMAS-LRDLPVALQQDADFICTTLLERADKALYEAKEGGRNQVVV 367

Query: 258 FSD 260
           +++
Sbjct: 368 YTN 370


>gi|322384357|ref|ZP_08058055.1| diguanylate cyclase-related-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321150859|gb|EFX44296.1| diguanylate cyclase-related-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 567

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 123/247 (49%), Gaps = 27/247 (10%)

Query: 18  NLESFSPHTFMIYFSIFFSIFIATVIFIANI--FLFYIGLTPFYGLEYILVENLSLVIIS 75
           N E +S  + ++  +   S+ ++ ++   N+   +  +   P+Y   Y   EN  L    
Sbjct: 334 NYEKYSVKSKIMEMTGSRSLMVSPILIADNVVGIIHVVHQNPYY-FSY---ENYKL---- 385

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL-LNH--SAFISSLGSYNEKLSIV 132
             +  L G+I  ++       +  + ++   D L+GL + H     I ++   +   +++
Sbjct: 386 --LQTLSGHIGLAMANATL--HAEVQRMVITDNLTGLYVRHYLDGQIKTMQKQDAIGTLI 441

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID FKQIND FGH VGD ++  +SD +  +        R GGEE A     +S+ E 
Sbjct: 442 LVDIDCFKQINDTFGHQVGDSILIQVSDIVRSMIREQDITARWGGEELAIYLPVTSKNEG 501

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPIS--TIIYRADQALYVAKK 249
             +A+++R  I        + PS  +T+S G+A+ +   + IS  ++ Y+AD ALY AK+
Sbjct: 502 MQMADEIRTAIMQ-----KTSPS--VTVSCGVADWKSTDDKISVESLFYKADMALYEAKR 554

Query: 250 SGRNRVV 256
           SG+NRVV
Sbjct: 555 SGKNRVV 561


>gi|319783866|ref|YP_004143342.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169754|gb|ADV13292.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 391

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 86/154 (55%), Gaps = 6/154 (3%)

Query: 107 DCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+GLLN  A  S  G  S+   +SIV FD+D+FK+ ND +GHPVGD+V+   +  ++ 
Sbjct: 222 DPLTGLLNRRALTSLYGERSFGPFMSIVMFDLDHFKRTNDVYGHPVGDQVLCRFA-AVIK 280

Query: 165 VFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
            +  P     RLGGEEFA      ++++A  LA+ +  +   ++I  +    +  T+S G
Sbjct: 281 KYARPGVDAFRLGGEEFAVVMSRMTDEKAYDLASKI-GVAFGAEIVPTQLGKLRSTVSGG 339

Query: 224 IA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           I         +  ++  AD ALY AK++GRN V+
Sbjct: 340 IGFGEASGSSLDNVLTEADAALYAAKRAGRNCVI 373


>gi|313681649|ref|YP_004059387.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313154509|gb|ADR33187.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 511

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 10/177 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
           G  +  L     + +Q SR D L+ L N  A    L         +     +   D+D+F
Sbjct: 334 GKKIATLEAELAQATQASREDFLTKLFNKRAIEEYLNLKEAEYERHGHSFCVAMLDLDHF 393

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILAND 198
           K +ND +GH  GD V+   +  L +       VGR GGEEF  A LG ++ E A I    
Sbjct: 394 KAVNDTYGHEAGDAVLIAFAKILKLEARNSDIVGRYGGEEF-LAILGDTDLEGAKIFCEK 452

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +R  +E +   +  G  I ++IS G+A+R +   +  +I  AD+ LY AK+ GRNRV
Sbjct: 453 VRAHVEQAHF-MYQGQRIAVSISIGVAQRSNFPSLKALISGADERLYDAKRKGRNRV 508


>gi|53724041|ref|YP_104559.1| GGDEF domain-containing protein [Burkholderia mallei ATCC 23344]
 gi|76810683|ref|YP_332955.1| GGDEF domain-containing protein [Burkholderia pseudomallei 1710b]
 gi|121600931|ref|YP_992557.1| GGDEF domain-containing protein [Burkholderia mallei SAVP1]
 gi|126441685|ref|YP_001058461.1| diguanylate cyclase [Burkholderia pseudomallei 668]
 gi|126454383|ref|YP_001065722.1| diguanylate cyclase [Burkholderia pseudomallei 1106a]
 gi|217423756|ref|ZP_03455257.1| diguanylate cyclase [Burkholderia pseudomallei 576]
 gi|242315781|ref|ZP_04814797.1| diguanylate cyclase [Burkholderia pseudomallei 1106b]
 gi|251767734|ref|ZP_04820230.1| diguanylate cyclase [Burkholderia mallei PRL-20]
 gi|254188320|ref|ZP_04894831.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237]
 gi|52427464|gb|AAU48057.1| GGDEF domain protein [Burkholderia mallei ATCC 23344]
 gi|76580136|gb|ABA49611.1| GGDEF domain protein [Burkholderia pseudomallei 1710b]
 gi|121229741|gb|ABM52259.1| GGDEF domain protein [Burkholderia mallei SAVP1]
 gi|126221178|gb|ABN84684.1| diguanylate cyclase [Burkholderia pseudomallei 668]
 gi|126228025|gb|ABN91565.1| diguanylate cyclase [Burkholderia pseudomallei 1106a]
 gi|157935999|gb|EDO91669.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237]
 gi|217393614|gb|EEC33635.1| diguanylate cyclase [Burkholderia pseudomallei 576]
 gi|242139020|gb|EES25422.1| diguanylate cyclase [Burkholderia pseudomallei 1106b]
 gi|243061853|gb|EES44039.1| diguanylate cyclase [Burkholderia mallei PRL-20]
          Length = 466

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 9/177 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           +L+EL  +  ++  L+  D L+G  N   FI  + S            S++  D+D FK 
Sbjct: 290 VLQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFKT 349

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           INDN+GH VGD V+     Q +        + R+GGEEF           A+ +A  +R 
Sbjct: 350 INDNYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRT 409

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
            I N+   I  G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV 
Sbjct: 410 TIANASFGI-DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 465


>gi|54296270|ref|YP_122639.1| hypothetical protein lpp0299 [Legionella pneumophila str. Paris]
 gi|53750055|emb|CAH11447.1| hypothetical protein lpp0299 [Legionella pneumophila str. Paris]
          Length = 609

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 70/134 (52%), Gaps = 3/134 (2%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +I+  D+D+FK+IND FGH  GD V+  L   L           R GGEEF         
Sbjct: 475 AILMLDLDHFKKINDTFGHDAGDLVLKELGQILNSDIRLGDIAARYGGEEFVLLLYDIDA 534

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247
           Q A + A +LR  I N Q+   + P   IT S GI+      K P + +I  AD+ALY A
Sbjct: 535 QAAKMKAENLRSAISNLQVKYGAQPVGQITASIGISVYPDDAKSP-AEVIEAADKALYQA 593

Query: 248 KKSGRNRVVCFSDI 261
           K  GRN+V+ FS+I
Sbjct: 594 KNKGRNKVILFSEI 607


>gi|53718944|ref|YP_107930.1| hypothetical protein BPSL1306 [Burkholderia pseudomallei K96243]
 gi|52209358|emb|CAH35303.1| putative membrane protein [Burkholderia pseudomallei K96243]
          Length = 454

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 9/177 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           +L+EL  +  ++  L+  D L+G  N   FI  + S            S++  D+D FK 
Sbjct: 278 VLQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFKT 337

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           INDN+GH VGD V+     Q +        + R+GGEEF           A+ +A  +R 
Sbjct: 338 INDNYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRT 397

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
            I N+   I  G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV 
Sbjct: 398 TIANASFGI-DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 453


>gi|311278102|ref|YP_003940333.1| diguanylate cyclase [Enterobacter cloacae SCF1]
 gi|308747297|gb|ADO47049.1| diguanylate cyclase [Enterobacter cloacae SCF1]
          Length = 460

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 15/176 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHS----------AFISSLGSYNEKLSIVFFDID 137
           ++L+ELF    R  Q   ID L+ LLN            A+ S  G+    LSI+  D+D
Sbjct: 281 TLLRELFEEVAR--QEVGIDVLTKLLNRRFLPPIFKREVAYASRTGT---PLSILVIDVD 335

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK IND +GH  GD V+  +S        +  +V R GG+EF      +S  E   LA 
Sbjct: 336 KFKGINDTWGHHTGDDVLRRISQVFYDNVRSSDYVFRYGGDEFIVMLTEASGSETLQLAE 395

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +R+ +E  ++   +G +I +++S G A          +I  AD+ALY+AKK GRN
Sbjct: 396 RIRRRVEKIKMQSPTGDAIPLSLSIGAAMFSGHPDYEHLIRNADEALYIAKKRGRN 451


>gi|302337056|ref|YP_003802262.1| diguanylate cyclase [Spirochaeta smaragdinae DSM 11293]
 gi|301634241|gb|ADK79668.1| diguanylate cyclase [Spirochaeta smaragdinae DSM 11293]
          Length = 353

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/139 (38%), Positives = 73/139 (52%), Gaps = 9/139 (6%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           SI+  DID+FK++ND +GH  GD+VI  +S  +           R GGEEF        E
Sbjct: 216 SIIMLDIDHFKKVNDTYGHTAGDEVIKSVSRIIRDNLRQQDMGVRYGGEEFLVFLEEVPE 275

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-----ISTIIYRADQAL 244
             A  +A  LRK +      + +  S  +TISAG+A   H  P     I   I+RAD AL
Sbjct: 276 TTAYDIAERLRKKVGTCHEELMAC-SEQVTISAGVA---HYRPSVDKNIEACIHRADVAL 331

Query: 245 YVAKKSGRNRVVCFSDIEN 263
           Y +K++GRNR  C S+IE 
Sbjct: 332 YYSKRNGRNRTTCASEIEQ 350


>gi|153839376|ref|ZP_01992043.1| sensory box/ggdef family protein [Vibrio parahaemolyticus AQ3810]
 gi|149747098|gb|EDM58086.1| sensory box/ggdef family protein [Vibrio parahaemolyticus AQ3810]
          Length = 488

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 21/172 (12%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHP 149
           ++  LS  D L+GL N   F   L  Y              +  FDID+FK+IND  GH 
Sbjct: 322 QLRNLSEKDGLTGLWNRRKFEEQLTHYANIVERYPDTPTTCLALFDIDHFKRINDERGHD 381

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GDKVI  +++ L+    T  FV R+GGEEFA     ++ +EA ++ N LR       + 
Sbjct: 382 EGDKVICSVAETLLREVRTTDFVSRVGGEEFAVIMPHTTVKEAEVVLNRLR-------VA 434

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VCFS 259
           +    ++ +T+SAG ++       S   Y+ AD ALY +K +GRN V +C S
Sbjct: 435 VQLRSNMTVTVSAGYSDLTADRTRS---YKCADIALYESKSAGRNCVSLCHS 483


>gi|150017320|ref|YP_001309574.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Clostridium beijerinckii NCIMB 8052]
 gi|149903785|gb|ABR34618.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Clostridium beijerinckii NCIMB 8052]
          Length = 981

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 93/185 (50%), Gaps = 12/185 (6%)

Query: 85  ISGSI--LKELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEKLSIVFF-D 135
           I+GSI  + E  IS +RI  ++  D L+ L N + F++       L +Y  K  IVFF D
Sbjct: 537 ITGSIRDISERKISEDRIKFMAFYDSLTKLPNRTLFMNRLNEQLQLSNYANKQGIVFFID 596

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D FK IND  GH  GDK++  L+ Q   +      + RLGG+EF      S E E    
Sbjct: 597 LDNFKNINDTMGHEYGDKLLISLAKQFENLIEEKDTISRLGGDEFILLHPDSKEDEIQTY 656

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
           AN L  + +  ++       ++IT S GIA         STI+  AD A+Y AK+ G+NR
Sbjct: 657 ANKLLGLFD--KVFKIDNKHMYITASVGIALYPKDGRDSSTILRNADAAMYRAKELGKNR 714

Query: 255 VVCFS 259
              F 
Sbjct: 715 FSLFD 719


>gi|296134751|ref|YP_003641993.1| diguanylate cyclase with PAS/PAC sensor [Thiomonas intermedia K12]
 gi|295794873|gb|ADG29663.1| diguanylate cyclase with PAS/PAC sensor [Thiomonas intermedia K12]
          Length = 530

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 88/162 (54%), Gaps = 7/162 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           ++++++ D L+G  N   F     +      ++  S++  D D+FK++ND  GH VGD V
Sbjct: 362 LTRMTQTDALTGFYNRRGFFERANALLQSARDQAPSLLLIDADHFKRVNDTHGHAVGDTV 421

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  L++++         +GR+GGEEFA     +S + A  LA+ +R  +    + I  G 
Sbjct: 422 LVQLANRMNAALREGDVIGRIGGEEFAVFLPTTSLENAYELADRIRLSVSRHALRI-QGL 480

Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + +T+S G+   +  +  +   + RAD A+Y AK++GRNRV
Sbjct: 481 RVPMTLSIGVTVLQPGESTLEAALGRADTAMYQAKQNGRNRV 522


>gi|242280249|ref|YP_002992378.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
 gi|242123143|gb|ACS80839.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
          Length = 383

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 94/183 (51%), Gaps = 13/183 (7%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFD 135
           Y  G  L+  + +   + +L  +D L+G+ +           F S+L  +N KLS++  D
Sbjct: 187 YTFGRSLRREYAAMEDLKKLVAVDELTGVCSRRRVLEAGDCIFKSAL-RFNNKLSVLMMD 245

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK++ND+ GH VGD+V+   + +   V       GRLGGEEF      S   +   +
Sbjct: 246 IDHFKKVNDDHGHCVGDEVLKETASRCSDVLREVDHFGRLGGEEFLVILPHSGVHDGIKV 305

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  LR  +      +     + +++S G+AE R H +   ++I  AD+ LY AKK GR+ 
Sbjct: 306 AERLRSCVRERMFKVGES-YLPVSVSIGVAELRGHGD-FKSLIQEADEQLYRAKKCGRD- 362

Query: 255 VVC 257
           +VC
Sbjct: 363 LVC 365


>gi|302185175|ref|ZP_07261848.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 551

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 85/157 (54%), Gaps = 10/157 (6%)

Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +      S  S  E   + F   DID+FK++ND+ GHP+GD+VI  L+
Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRREGKPLCFAMLDIDHFKRVNDSHGHPMGDRVIKSLA 438

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L        F+GR GGEEFA     +  Q A  + +D+R     ++I+  + P+ +  
Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIQSAHKVLDDIRHRF--AEIHYPAQPADLFC 496

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T SAG+      +   ++  +AD ALY AK +GRNRV
Sbjct: 497 TFSAGVVSLGANDDSLSLASQADTALYRAKHAGRNRV 533


>gi|258625533|ref|ZP_05720422.1| sensory box/GGDEF family protein [Vibrio mimicus VM603]
 gi|258582177|gb|EEW07037.1| sensory box/GGDEF family protein [Vibrio mimicus VM603]
          Length = 308

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 86/171 (50%), Gaps = 13/171 (7%)

Query: 98  NRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
            ++ QL+  D L+ L N         SAF  +  S  + LS +  DID FKQIND+FGH 
Sbjct: 138 EQLYQLANTDALTQLCNRRKLWADFRSAFARAKHS-KQPLSCISIDIDNFKQINDHFGHD 196

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+ FL+     +       GR+GGEEF      +    A  LA  +R+    SQ +
Sbjct: 197 KGDEVLCFLAQLFYELTSEHHICGRVGGEEFIIVLEDTPVATAFALAEQIRQRF--SQHS 254

Query: 210 ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                  H+ + AG+A  R      + I  R+DQALY AK+SGRNR   ++
Sbjct: 255 FFEQKE-HVYLCAGVATMRLSDHDFTDIYRRSDQALYQAKRSGRNRCCIYN 304


>gi|229592177|ref|YP_002874296.1| hypothetical protein PFLU4782 [Pseudomonas fluorescens SBW25]
 gi|229364043|emb|CAY51618.1| putative membrane protein [Pseudomonas fluorescens SBW25]
          Length = 352

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 86/175 (49%), Gaps = 22/175 (12%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S LSRID L+GLLNH ++   L              +I   DID+FK+IND  GH VGD
Sbjct: 180 LSALSRIDSLTGLLNHGSWKDLLHLKFHKCQQQQSHATIALIDIDHFKRINDTHGHIVGD 239

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII---ENSQIN 209
            V+  LS +L          GR GG+EF         ++AA +   +R+      N QI 
Sbjct: 240 AVLRQLSLELRRNLRENDLAGRYGGDEFCVILPQMPLEQAAQVMERMRETFSNYRNPQI- 298

Query: 210 ISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVVCFSD 260
               P + +++S G+A     +P     +  +  AD+ALY AK +GRNRV    D
Sbjct: 299 ----PELRVSLSIGLAG---FQPSFTNAAMWLNAADRALYAAKDTGRNRVSVSDD 346


>gi|218689426|ref|YP_002397638.1| hypothetical protein ECED1_1665 [Escherichia coli ED1a]
 gi|218426990|emb|CAR07862.2| conserved hypothetical protein [Escherichia coli ED1a]
          Length = 296

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 2/135 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L ++  DID FK +ND +GH +GD V+  L+  L         V R GGEEF      ++
Sbjct: 159 LYLMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVYRYGGEEFIIIVKATN 218

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           ++EA      + ++++N  I  S G  I+IT++AG++    +EP+  +I RAD+A+Y  K
Sbjct: 219 DEEACRAGVRICQLVDNHAITHSEG-HINITVTAGVSRAFPEEPLDVLIGRADRAMYEGK 277

Query: 249 KSGRNRVVCFSDIEN 263
           ++GRNR + F D +N
Sbjct: 278 QTGRNRCM-FIDEQN 291


>gi|116252403|ref|YP_768241.1| GGDEF domain/EAL domain-containing protein [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115257051|emb|CAK08145.1| putative GGDEF/GAF domain sensory box protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 417

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 92/187 (49%), Gaps = 12/187 (6%)

Query: 89  ILKELF-ISYNRIS--QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           IL+EL   + +RI   Q + ID L+  +   AF       IS    +   LS + FDID+
Sbjct: 154 ILEELAGAAMDRIELMQSAAIDSLTEAMTRRAFKQEAEQLISLALRHKHDLSCIVFDIDH 213

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++ND  GH  GD+V+  ++             GRLGGEEFA        + AA +A  
Sbjct: 214 FKKVNDTHGHAAGDEVLKAVASTCKTTLRAGDLFGRLGGEEFAVILPHVDREGAAAVAEK 273

Query: 199 LRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           LR  I  SQI       + +T S G  A     + I T++ +AD A+Y AK  GRNR V 
Sbjct: 274 LRAAI-ASQIIRGDHGDLTVTASFGTSALSIVSKEIETLLAQADAAMYQAKHGGRNRCVS 332

Query: 258 FSDIENN 264
           +S I  +
Sbjct: 333 WSSIHAD 339


>gi|78777468|ref|YP_393783.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78498008|gb|ABB44548.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM
           1251]
          Length = 318

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 10/175 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFK 140
           ++ EL      + + S +D L+ + N  +  S L          Y++ L ++  DID FK
Sbjct: 141 VITELHQKVKILEETSNLDPLTKVFNRRSLSSYLQEVCSNKSLPYDD-LHVMMLDIDNFK 199

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GDK++ F+S+ L         + R GGEEF      +S+ +   +AN L 
Sbjct: 200 SINDKYGHIAGDKILIFISNILRKTLRDGDKIFRYGGEEFTIVINRNSDDQCEQIANRLL 259

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +I ++ + I  G  I +T S G+ +    +   +++ RAD+ALYV+KKSG+N V
Sbjct: 260 HLISSNNL-IYMGERISVTASIGVTKLKEHDTPDSLLSRADKALYVSKKSGKNMV 313


>gi|116049803|ref|YP_791390.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892192|ref|YP_002441059.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|115585024|gb|ABJ11039.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218772418|emb|CAW28200.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
          Length = 401

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 95/197 (48%), Gaps = 16/197 (8%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ISSLG 123
            LV++  + +L   Y+     +E F+    +  ++  D L+GL+N   +          G
Sbjct: 199 GLVVLICSFAL---YLQDYAQREQFLGRRLLGMMAEQDSLTGLVNRRYYELLAQRALEQG 255

Query: 124 SYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFA 181
           +  EK ++++  D+D FK  ND++GHP GD  +  L   L      P+    RLGGEEFA
Sbjct: 256 AREEKGVALILVDVDDFKAYNDHYGHPAGDAALRQLGVVLRQGARRPLDIAARLGGEEFA 315

Query: 182 AAALGSSEQEAAILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEPISTIIY 238
                S E     +A  LR+ +E      +  S+GP   +TIS G+A       +  +  
Sbjct: 316 VLLYDSEEGNTLAIAERLRQAVEALGIEHLGSSAGPC--LTISLGVAYSTSGMGLDALYR 373

Query: 239 RADQALYVAKKSGRNRV 255
            AD+ALY AK +GRN V
Sbjct: 374 EADRALYEAKDAGRNAV 390


>gi|296132855|ref|YP_003640102.1| diguanylate cyclase [Thermincola sp. JR]
 gi|296031433|gb|ADG82201.1| diguanylate cyclase [Thermincola potens JR]
          Length = 383

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 120/249 (48%), Gaps = 16/249 (6%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITI 78
           +E  SP  F    +++  + ++  +   N  + ++ +   Y  + +  + ++LV    + 
Sbjct: 127 MEKKSPSFFGPEHNLYIPLLMSVPLVSRNKVIGFVNIHSMYQNKSLTPDKIALVNALASQ 186

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
           + +   IS + L      +N + + + ID  + L N   F       I+   +    LS+
Sbjct: 187 ASIA--ISNAQL------FNAMKEQATIDPCTNLFNFRYFQQKLDEEINKAAANGTALSL 238

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK++ND +GH  GD+V+  +S  L     +   V R GGEEFA      +++ 
Sbjct: 239 IILDIDFFKKVNDTYGHLYGDQVLHEISKILKSNVRSEDTVCRYGGEEFAIIFPNCTQKI 298

Query: 192 AAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           A  +A  +R  IE +  N   G     +T+S G+AE       + +I+RAD +LY AK +
Sbjct: 299 AERIAERIRAKIEETTANDRRGIFKSPVTVSIGVAEYTPDINKTMLIHRADCSLYYAKNT 358

Query: 251 GRNRVVCFS 259
           GRNRV  + 
Sbjct: 359 GRNRVCGYD 367


>gi|229192257|ref|ZP_04319222.1| Sensory box/GGDEF family protein [Bacillus cereus ATCC 10876]
 gi|228591207|gb|EEK49061.1| Sensory box/GGDEF family protein [Bacillus cereus ATCC 10876]
          Length = 431

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 87/176 (49%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL  +Y    +L+ ID L+ + N   F   L          +EK++I+ FDID FK +
Sbjct: 255 ITELDETYQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTV 314

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 315 NDTYGHDFGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 374

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q    +G S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 375 IETKQF---TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 426


>gi|163758632|ref|ZP_02165719.1| hypothetical protein HPDFL43_14452 [Hoeflea phototrophica DFL-43]
 gi|162283922|gb|EDQ34206.1| hypothetical protein HPDFL43_14452 [Hoeflea phototrophica DFL-43]
          Length = 566

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 10/169 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFF-DIDYFKQINDNFGHPVGDK 153
           ++Q  R D L+G LN   F+++  S  E     + + +F  DID+FKQ+ND  GHP+GD+
Sbjct: 131 VAQFER-DALTGALNRERFVTATKSVLEVRGRKRFAALFLVDIDHFKQVNDTHGHPIGDR 189

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+ F + QL   F    +VGRLGG+EFA     S     A       + +E     +  G
Sbjct: 190 VLCFFAQQLEASF-PDGWVGRLGGDEFAVFVEHSDPITEAFAQKRCSEFVERLAQGLDIG 248

Query: 214 PS-IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              + ++ S GIA    H +    ++  AD ALY +KK+GR +   +++
Sbjct: 249 TQRLMVSASVGIAMAPRHGKTWGALVANADMALYASKKNGRAQSTMYAE 297


>gi|254478046|ref|ZP_05091430.1| PAS fold family protein [Carboxydibrachium pacificum DSM 12653]
 gi|214036050|gb|EEB76740.1| PAS fold family protein [Carboxydibrachium pacificum DSM 12653]
          Length = 692

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 11/154 (7%)

Query: 107 DCLSGLLNHSAFISSLGS------YNEKL-SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ + N   F+  L         N+KL S++ FD+D+FK +ND FGH  GD V+  ++
Sbjct: 538 DPLTNIYNRRFFMQMLEQEIERVKRNKKLFSLIMFDLDHFKNVNDRFGHAAGDMVLKSVA 597

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           D +        +  R GGEEF      +S   AA LA +LRK I  ++++        +T
Sbjct: 598 DTVKGRIRKTDYFARWGGEEFIILLPETSLNNAAELAEELRKKISETELDGIG----KVT 653

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            S G+ E  + + + T++ R D ALY AK SGRN
Sbjct: 654 ASFGVTEYRNTDTVDTVLLRVDGALYEAKGSGRN 687


>gi|167577730|ref|ZP_02370604.1| GGDEF domain protein [Burkholderia thailandensis TXDOH]
          Length = 504

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 10/178 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQI 142
           L++   + +R+ +LSR D L+GL N  A   +L S   +L       SI+F D D+FK+ 
Sbjct: 319 LRDRTAARDRLLELSRTDPLTGLGNRRALDDALQSEWARLQRNDSCLSILFIDADHFKRY 378

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND  GH  GD  +  L+  +    G +     R GGEEF A    + E  AA +A  +R 
Sbjct: 379 NDAHGHAQGDLALKRLAACIARHAGRSGDLAARYGGEEFVAILPDADETAAARIAESIRA 438

Query: 202 IIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I ++    ++ P    T+S G   A R     +   +  AD ALY AK  GR+R V 
Sbjct: 439 GIRDATRAGATPPIPRFTVSVGCATARRGAHASLDAFVRAADDALYRAKADGRDRTVA 496


>gi|254180255|ref|ZP_04886854.1| diguanylate cyclase [Burkholderia pseudomallei 1655]
 gi|184210795|gb|EDU07838.1| diguanylate cyclase [Burkholderia pseudomallei 1655]
          Length = 454

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 9/177 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           +L+EL  +  ++  L+  D L+G  N   FI  + S            S++  D+D FK 
Sbjct: 278 VLQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFKT 337

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           INDN+GH VGD V+     Q +        + R+GGEEF           A+ +A  +R 
Sbjct: 338 INDNYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRT 397

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
            I N+   I  G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV 
Sbjct: 398 TIANASFGI-DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 453


>gi|223039876|ref|ZP_03610160.1| 3-deoxy-d-manno-octulosonic-acid transferase [Campylobacter rectus
           RM3267]
 gi|222878885|gb|EEF13982.1| 3-deoxy-d-manno-octulosonic-acid transferase [Campylobacter rectus
           RM3267]
          Length = 417

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 8/171 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           E   + N+I+  +  D L+G+ N   F  ++  Y        E   +   DID+FK+IND
Sbjct: 245 EAMENINQIADFANKDFLTGVYNRRYFYENMNEYVAYAEEHMEPYVVAMLDIDHFKKIND 304

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GDKV+  L+ +L+        + R GGEEF       S ++A     +LR  I 
Sbjct: 305 THGHNSGDKVLKTLAKKLIDETKGDDLIARFGGEEFCIILKDISNEDAVKFFVNLRANIA 364

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           N ++ +     I  T+S G+A       +  ++  AD+ALY AK++GRNRV
Sbjct: 365 NCKVQLKK-EQISFTVSIGVAFSRSDYRLDELLELADEALYRAKENGRNRV 414


>gi|152999827|ref|YP_001365508.1| PAS/PAC and GAF sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|151364445|gb|ABS07445.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS185]
          Length = 921

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 10/171 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++ L+  D L+ L N   F+  L          N +L+ V  D+D FK IND+FGH +G
Sbjct: 492 QLTHLAYFDPLTHLPNRMKFMMQLKQEVRQAKRLNLQLATVMIDVDLFKHINDSFGHSIG 551

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINI 210
           D+++  L+ +L    G    + R+GG+EF A   G    E A +A N LR++ E   I +
Sbjct: 552 DEMLVELAKRLRSQVGDQDVLSRIGGDEFVALISGIDNNEDATVAINQLRQVFEQPFI-V 610

Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           S+G  + +T S G++   +      T++  AD A+Y AK  GRN    +++
Sbjct: 611 STGDHLRLTASMGVSLYPNDGTDADTLLRNADAAMYRAKNDGRNNYAFYTE 661


>gi|113971525|ref|YP_735318.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|114046280|ref|YP_736830.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113886209|gb|ABI40261.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113887722|gb|ABI41773.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 646

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 22/207 (10%)

Query: 67  ENLSLVIISITISLLLGYISGSILK--ELF----ISYNR-ISQLSRIDCLSGLLNHSAFI 119
           + L+L+  + ++ L++  ++G IL    LF    +  NR +  ++  D L+ L N     
Sbjct: 433 QELALLEKNKSLQLIILLLTGCILAIVSLFAYKQVHRNRHLQTIALTDYLTQLPNRRHIY 492

Query: 120 SSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           +    Y ++       LS++ FD DYFK+INDNFGH +GD+ +  ++     +      +
Sbjct: 493 AQAEQYFQQALKQKTPLSVIIFDADYFKKINDNFGHEIGDQALLTIAQACKELTADRNLI 552

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAE----- 226
           GR+GGEEF      ++ +    LA++L+ +I     IN+     + +T+SAG+A      
Sbjct: 553 GRIGGEEFLILLPNTTAERVWELAHELQSLISRYGAINLPE--ELKLTVSAGVATLSPEA 610

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRN 253
           +   +  + ++ RAD ALY AK +GRN
Sbjct: 611 KPQDDSFARLLKRADNALYEAKNAGRN 637


>gi|293409805|ref|ZP_06653381.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470273|gb|EFF12757.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 365

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 5/162 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
           NR+  L+  D L+G+ N  A  S L    +     +++  D+D+FK+ ND +GHP GD+ 
Sbjct: 201 NRLDALAHRDPLTGIANRRAMNSILHDAMDNGGSFALIMLDVDFFKRYNDTYGHPAGDRC 260

Query: 155 IAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212
           +  ++D L      +   V R GGEEFA     ++  EA  +A  +++ ++ + I + +S
Sbjct: 261 LIQVADALQRSTRQSEDVVVRYGGEEFAIILFNATLPEAETVAARVKQELKLAAIPHQAS 320

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +  +T+S GI      +    II  AD ALY AK+SGRNR
Sbjct: 321 AVNAFVTVSQGITCSAPAKTAEQIISDADAALYRAKESGRNR 362


>gi|259414773|ref|ZP_05738696.1| diguanylate cyclase with GAF sensor [Silicibacter sp. TrichCH4B]
 gi|259349224|gb|EEW60971.1| diguanylate cyclase with GAF sensor [Silicibacter sp. TrichCH4B]
          Length = 603

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 89/195 (45%), Gaps = 23/195 (11%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS----AFI 119
           ++ EN++L  +++ +S                  NR+SQL   D L+GLLN      AF 
Sbjct: 415 LIAENVALAAVNLNLS------------------NRLSQLVGYDPLTGLLNRRSLDLAFC 456

Query: 120 SSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
              G+      + +  DID+FK IND FGH  GD+VI   S  L    G      R GGE
Sbjct: 457 KYAGAPPALPTACLIIDIDHFKSINDGFGHEAGDEVIKSFSGLLAATVGDRGTCYRFGGE 516

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EF    LG  +  A  +A D+R                 ITISAG+A       + T++ 
Sbjct: 517 EFVVLLLGQDDTIAFEIAEDIRTRTAFMAFTYRGQSLGKITISAGLAVASSNGSMETLLS 576

Query: 239 RADQALYVAKKSGRN 253
           RAD AL  AK +GR+
Sbjct: 577 RADAALLRAKSAGRD 591


>gi|241258759|ref|YP_002978643.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240863229|gb|ACS60892.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 551

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/155 (38%), Positives = 82/155 (52%), Gaps = 7/155 (4%)

Query: 106 IDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +D L+GL N     S   +L S     SI   D+D+FK IND+F H +GD+V++ +   L
Sbjct: 399 LDALTGLYNRKYLDSRFKALTSEKRPYSIAMLDVDHFKSINDDFSHMIGDRVLSAIGTIL 458

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITIS 221
                      R GGEEF     G+  + AA L   LR  IE    + I +G  +H+TIS
Sbjct: 459 RSQLRVTDQAIRFGGEEFVVLFAGAP-RGAADLCERLRSAIERWDWSEICNG--LHVTIS 515

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+A     +  + I+  ADQ LY AKK+GRNRVV
Sbjct: 516 IGVAGTLSAKSPNEILAIADQNLYAAKKTGRNRVV 550


>gi|157377093|ref|YP_001475693.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157319467|gb|ABV38565.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 340

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 9/167 (5%)

Query: 98  NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  ++  D L+GL N             S  S +  L ++  D+D+FK +NDN+GH V
Sbjct: 173 ERLQNMAARDPLTGLYNRLHLESVFEQITQSESSPDSSLFMLLIDLDHFKSVNDNYGHEV 232

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDKV+  +++ +    G   +  R+GGEEF     G++      +A  L+  IE S +++
Sbjct: 233 GDKVLVRVAELIKQTIGENDWGFRVGGEEFCLLLPGTNHASVQEVAQRLQLAIEGSAVSV 292

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
                +  T S GIA+      +   +YR AD+ LY AK+ GRN VV
Sbjct: 293 GE-HKVSTTASIGIAQWPESGELMQALYRTADRRLYRAKEQGRNCVV 338


>gi|333029105|ref|ZP_08457168.1| hypothetical protein STTU_p0142 [Streptomyces sp. Tu6071]
 gi|332742313|gb|EGJ72755.1| hypothetical protein STTU_p0142 [Streptomyces sp. Tu6071]
          Length = 225

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 76/152 (50%), Gaps = 8/152 (5%)

Query: 107 DCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+GLL    + +     L  + +  ++V  D D+FKQIND  GH  GD V+A L  +L
Sbjct: 45  DPLTGLLRRDTYTARARRILARHGDNTTVVMVDADHFKQINDRDGHEAGDAVLAALGQRL 104

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
               G     GRLGG+EFA A    +E  A  L   +R +  ++ + +  G  I + +S 
Sbjct: 105 TAWAGPRAVCGRLGGDEFAVALPLPAEHRAERLEQLVRAL--HAPVRLDDGRLIQVAVSV 162

Query: 223 GIA--ERCHKEPISTIIYRADQALYVAKKSGR 252
           G A  +  H   ++ +   +D ALY  K +GR
Sbjct: 163 GAATTDTLHTRDLAALQRASDAALYDGKHTGR 194


>gi|332702253|ref|ZP_08422341.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552402|gb|EGJ49446.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 554

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 86/167 (51%), Gaps = 10/167 (5%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           S L+R D L+ LLNH++    L S          +L+    D+D+FK +ND +GH VGDK
Sbjct: 386 SMLTR-DSLTNLLNHTSLKIRLESECSRARRIGARLAFAMIDLDHFKNVNDTYGHLVGDK 444

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISS 212
           V+  L+  L         VGR GGEEFA   L   +++ AA L + +R    +   + + 
Sbjct: 445 VLKILAKVLKQRLRVSDVVGRYGGEEFAVILLDIDDRDHAAELLDRIRAAFADMDQS-AD 503

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           G +  +T S GIA         T+   AD+ALY  K+ GRNRVV  S
Sbjct: 504 GATFRVTFSCGIATFPEFPDAHTLADAADRALYEGKRLGRNRVVLAS 550


>gi|188591141|ref|YP_001795741.1| diguanylate cyclase (ggdef domain) [Cupriavidus taiwanensis LMG
           19424]
 gi|170938035|emb|CAP63019.1| putative diguanylate cyclase (GGDEF domain) [Cupriavidus
           taiwanensis LMG 19424]
          Length = 390

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 69/128 (53%), Gaps = 1/128 (0%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            EKLS++  D+DYFK INDN+GH  GD V+  +   +           RLGGEEF     
Sbjct: 250 GEKLSVLLCDLDYFKFINDNYGHSAGDAVLTQVGRIIAAGIRRRDIAARLGGEEFVVLLP 309

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            +  + A  LA  LR+ +E + +++  G   ++T S G+A     E +  ++ RAD  LY
Sbjct: 310 DTPHEAALQLAERLRQTLEQTSMDVLPGMG-NVTASFGVATLRPGEDLEALLMRADNVLY 368

Query: 246 VAKKSGRN 253
            AK +GRN
Sbjct: 369 AAKNNGRN 376


>gi|170697745|ref|ZP_02888832.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
 gi|170137360|gb|EDT05601.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
          Length = 452

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 90/179 (50%), Gaps = 14/179 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142
           + LF ++  + + S  D L+G  N        H+ F+ +     E LS++  D+D+FK  
Sbjct: 275 QRLFEAHTMLIRSSARDGLTGAFNRSHFNDHFHTLFLQAR-RQGEPLSLLMVDVDHFKAY 333

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD  +  +++ L      P   V R GGEEFA     +  + A ++A + R+
Sbjct: 334 NDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEFAIVLPNTGARGARLVAEEARE 393

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVC 257
            +    + + S P+  +++S G A     E +ST   +I  AD ALY AK  GRNRVV 
Sbjct: 394 AVLRLDLAMPSSPAGRVSVSVGCATVSADE-LSTPDALIEAADAALYRAKDGGRNRVVA 451


>gi|152980290|ref|YP_001353520.1| hypothetical protein mma_1830 [Janthinobacterium sp. Marseille]
 gi|151280367|gb|ABR88777.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 417

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
           G +   LS++  D+D+FK+IND +GH  GD+V+   +            +GRLGGEEF  
Sbjct: 270 GKFGRPLSLLIIDLDHFKRINDTYGHAGGDEVLREFARMTRASLRDGDALGRLGGEEFGI 329

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGP--SIHITISAGIAERCHKEPISTIIYRA 240
               +    A  +A  LR   E+S+ ++ SG     H +IS GIA     E    +  RA
Sbjct: 330 LLPNTDTVGALAIARRLR---EDSERHLISGTFGECHYSISIGIATWRDGENFDRLSIRA 386

Query: 241 DQALYVAKKSGRNRVV 256
           D+ALY AK SGRNRV+
Sbjct: 387 DRALYTAKNSGRNRVL 402


>gi|149184376|ref|ZP_01862694.1| GGDEF domain protein [Erythrobacter sp. SD-21]
 gi|148831696|gb|EDL50129.1| GGDEF domain protein [Erythrobacter sp. SD-21]
          Length = 243

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 108/233 (46%), Gaps = 17/233 (7%)

Query: 33  IFFSIFIATVIFIANIF--LFYIGLTPFYGLEYILVENLSLVI---ISITISLLLGYISG 87
           I  +  IA ++   ++F  L  +   P  G   +L  +L++ I    ++ ++L++   + 
Sbjct: 2   IRSTAIIAGILTAGSLFCTLIVMAFRPSDGEHVVLALSLAVAIPLVCAVPVALVVASQA- 60

Query: 88  SILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQIN 143
               E+    NR ++  +  D L+ L N   F   +G   E     +++  D+D FKQ+N
Sbjct: 61  ----EVLARLNRQLAYEASHDALTDLPNRREFFDEIGRRLESGGGGTVLLADVDRFKQVN 116

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GD+ +  L+        +   V RLGGEEF      +S      +A  LRK +
Sbjct: 117 DHHGHHTGDEALRALARLFAREIASDGLVARLGGEEFGVLIPDTSLARGHEVAERLRKTV 176

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV 255
           E    +   G    +TIS GI   C +E  S    R AD ALY AK  GRNRV
Sbjct: 177 EAQDFHSPEGNRFPLTISIGID--CLRERESAYPLRGADSALYAAKSEGRNRV 227


>gi|170744709|ref|YP_001773364.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium sp. 4-46]
 gi|168198983|gb|ACA20930.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium sp. 4-46]
          Length = 457

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 87/165 (52%), Gaps = 9/165 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL N   F S L G + E       L+++  DID FK IND+FGH  GD+V
Sbjct: 290 ELAVTDGLTGLHNRRYFDSHLAGLFRETSLRGRPLALLLLDIDRFKAINDSFGHDAGDEV 349

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   +D++         V R GGEE       +    A  +A  +R+ IE +   +  G 
Sbjct: 350 LRQFADRIRAHTRGIDIVARFGGEEIVVVVPDTGLDGAGQVAERIRERIEATPFLVHGGT 409

Query: 215 -SIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVC 257
             I +T+S G+A R   + + + ++ RAD ALY AK+ GRNRVV 
Sbjct: 410 RGIDVTVSIGLAVRHPDDALPADLLKRADVALYRAKQEGRNRVVA 454


>gi|262173335|ref|ZP_06041012.1| GGDEF family protein [Vibrio mimicus MB-451]
 gi|261890693|gb|EEY36680.1| GGDEF family protein [Vibrio mimicus MB-451]
          Length = 338

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 86/155 (55%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D LSGL N  AF     +L   +  + ++  DID+FK +ND +GH  GD++I  ++ +L 
Sbjct: 182 DSLSGLYNRRAFDGDMFTLIHADHPVCLIMLDIDHFKALNDTYGHLFGDQIIRAIAKRLQ 241

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221
            +    +   R GGEEFA      S + A   A  +R+ IE   + +  SG S+ +IT S
Sbjct: 242 SLCRDGVTAYRYGGEEFALITPNKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGNITAS 301

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ E+   + + +++ RAD+ LY AK  GRNRV+
Sbjct: 302 FGVVEKIDGDSLESLVGRADRLLYEAKNLGRNRVM 336


>gi|253699922|ref|YP_003021111.1| diguanylate cyclase [Geobacter sp. M21]
 gi|251774772|gb|ACT17353.1| diguanylate cyclase [Geobacter sp. M21]
          Length = 432

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 13/179 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           L+EL  +   +   +  D ++G+LN   F   L S       Y   L+I+F D+D FK I
Sbjct: 253 LQELKQANALLESQATTDPVTGILNRRKFCELLESAIQESKRYGLPLAIIFLDVDRFKPI 312

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-K 201
           ND +GH  GD V+  L+  +  +        R GGEEF      +  + A +LA  +R +
Sbjct: 313 NDTYGHDAGDSVLRELAGLVSGMIRKTDIFARFGGEEFVLVVHNNDGRTARMLAEKIRSR 372

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + ++S I++       +T S G+A     +   +++ RADQA+Y AK +GRNRV    D
Sbjct: 373 VSQHSFIHVG-----QVTASFGVARLEPGDTPESLVKRADQAMYSAKHAGRNRVETCCD 426


>gi|170734510|ref|YP_001766457.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3]
 gi|169817752|gb|ACA92335.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3]
          Length = 452

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 93/178 (52%), Gaps = 14/178 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142
           ++LF ++  + + S  D L+G  N        H+ F+ +     E LS++  D+D+FK  
Sbjct: 275 QQLFEAHATLIRSSARDGLTGAFNRSHFNDHFHTLFLQAR-RQGEPLSLLMVDVDHFKAY 333

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD  +  +++ L      P   V R GGEEFA     +  + A ++A+++R+
Sbjct: 334 NDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEFAIVLPNTGARGARVVADEVRE 393

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256
            +    + +   P+  +++S G A     + +ST   +I  AD ALY AK +GRNRVV
Sbjct: 394 AVLRLDLAMPDSPAGRVSVSVGCAT-VSADDLSTPDALIEAADAALYRAKDAGRNRVV 450


>gi|88859173|ref|ZP_01133814.1| sensory box/GGDEF domain protein [Pseudoalteromonas tunicata D2]
 gi|88819399|gb|EAR29213.1| sensory box/GGDEF domain protein [Pseudoalteromonas tunicata D2]
          Length = 426

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 90/166 (54%), Gaps = 14/166 (8%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+ ID L+ L N  +F +   S       +  K  I+  D+DYFK IND+FGH VGD+V
Sbjct: 262 RLASIDELTQLANRRSFTTQGNSELARFLRHGCKFVILLLDLDYFKNINDSFGHAVGDEV 321

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA----NDLRKIIENSQINI 210
           +  +S+  V       FV R+GGEEFA     +  + A ++A    N+++KII N+    
Sbjct: 322 LIAVSNCFVDTVRELDFVSRIGGEEFAIILPKTDVKAAYVIAERIRNNIKKIIVNTPFCQ 381

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               SI I +S   AE      +  I+ RAD+ALY AK +GR+ V+
Sbjct: 382 VKNLSISIGLSIVKAEDSE---LDHILLRADKALYEAKSAGRDCVI 424


>gi|307720988|ref|YP_003892128.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica
           DSM 16294]
 gi|306979081|gb|ADN09116.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica
           DSM 16294]
          Length = 520

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 83/177 (46%), Gaps = 11/177 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           +G  + E  +   ++ +L+ ID L+G+ N   F       I     Y   LS++ FD+D 
Sbjct: 344 TGKDVTEQMLLEEKLRELAAIDKLTGISNRLRFDEVLQFSIDRAKRYKVNLSVILFDVDK 403

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++ND +GH  GD V+  ++            + R GG+EF          EA IL   
Sbjct: 404 FKKVNDTYGHLCGDDVLKMIAKIGHDSIRKSDLIARWGGDEFIILQSDIPSDEAQILVER 463

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           LR  IE+            +T+S G+      +   ++I RAD ALY AK+ GRNRV
Sbjct: 464 LRHNIESYNFKDVG----KVTVSFGVTHFKEDDTKESLIKRADDALYEAKEHGRNRV 516


>gi|242280925|ref|YP_002993054.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens
           DSM 2638]
 gi|242123819|gb|ACS81515.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens
           DSM 2638]
          Length = 299

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 87/189 (46%), Gaps = 20/189 (10%)

Query: 82  LGYISGSILKELFISYNR----------ISQLSRIDCLSGLLNHS-------AFISSLGS 124
           LG I+G+   E+F   N           + Q +  D L+G+ N          F  S+  
Sbjct: 108 LGQITGAA--EIFTEVNEKTDLAYDLELLRQEAMTDPLTGMANRRYMDQAAVHFEESIKH 165

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
             + L ++F DID FK +ND FGH  GDK +  ++  ++          R GGEEF    
Sbjct: 166 EKQSLGVLFVDIDNFKSVNDRFGHDTGDKALTMVAKTMLSALRPTDIASRWGGEEFVIFV 225

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
                ++   LA  +RK+IE S I+     SI +T S G       E I + I RAD+  
Sbjct: 226 PHVDAEKLGSLAERIRKLIELSWIDTEKA-SISVTASIGGTIVKPNETICSAIKRADEKA 284

Query: 245 YVAKKSGRN 253
           Y+ K+SGRN
Sbjct: 285 YLCKQSGRN 293


>gi|296159050|ref|ZP_06841877.1| diguanylate cyclase [Burkholderia sp. Ch1-1]
 gi|295890611|gb|EFG70402.1| diguanylate cyclase [Burkholderia sp. Ch1-1]
          Length = 563

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 86/183 (46%), Gaps = 27/183 (14%)

Query: 90  LKELFISYNRI-SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           L E   S N + S  +R D L+G L+   F+  L          NE L +   D+D+FKQ
Sbjct: 372 LAEQLQSANTLLSAEARHDALTGALSRRYFLDLLRHEIERARVSNEPLCMAIADLDHFKQ 431

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-- 199
           IND FGH  GD+ +    D           +GRLGGEEF             + A DL  
Sbjct: 432 INDRFGHAAGDRALEHFVDTCRAELRGADAIGRLGGEEFG----------LLLPATDLAG 481

Query: 200 -RKIIENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            R+++E  ++ + + P      S+ +++S GI E    +    I+ RAD ALY AK  GR
Sbjct: 482 GREVVERLRLRLKAMPSPKLPASVGLSVSIGITELSADDLPERIMSRADTALYAAKSGGR 541

Query: 253 NRV 255
           +R 
Sbjct: 542 DRT 544


>gi|258513411|ref|YP_003189633.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257777116|gb|ACV61010.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 738

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 9/173 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQINDNFGHPVGD 152
           +I  L+  D L+ + N      SL  Y  K       +++  D+D FK +ND  GH  GD
Sbjct: 305 QIKHLATHDYLTNIPNRYYLEESLKRYVAKAKRGTTSALLLLDLDNFKLVNDTKGHVAGD 364

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +++   +  L         + RLGG+EFA    G S  EA  +A  LR +I+N  I +S 
Sbjct: 365 ELLIIFTKILKANLREEDLLTRLGGDEFAVLLEGISINEATEIAEKLRAVIDNQTIALSL 424

Query: 213 -GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                ++T+S G++      +PI  I+ +AD+ALY+AK+SGRNRV+    +E+
Sbjct: 425 INVRFNLTVSIGLSMVDGSMDPIQ-ILSQADRALYIAKESGRNRVITIKGVED 476


>gi|167825369|ref|ZP_02456840.1| diguanylate cyclase [Burkholderia pseudomallei 9]
 gi|226198621|ref|ZP_03794187.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9]
 gi|225929364|gb|EEH25385.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9]
          Length = 454

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
            +L+EL  +  ++  L+  D L+G  N   FI  + S            S++  D+D FK
Sbjct: 277 GVLQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFK 336

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            INDN+GH VGD V+     Q +        + R+GGEEF           A+ +A  +R
Sbjct: 337 TINDNYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVR 396

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
             I N+   I  G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV 
Sbjct: 397 TTIANASFGI-DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 453


>gi|153010924|ref|YP_001372138.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188]
 gi|151562812|gb|ABS16309.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188]
          Length = 381

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 78/162 (48%), Gaps = 6/162 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--SIVFFDIDYFKQINDNFGHPVGDKVI 155
            R +  +R D L+GLLN  A    L     +L  S+V FD+D FK IND  GH VGD+V+
Sbjct: 214 RRHANEARTDSLTGLLNRRALYDVLDDNELQLGDSVVIFDLDAFKSINDTHGHIVGDEVL 273

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              S  L         + R+GGEEF          +   LA+ +RK         S+G  
Sbjct: 274 YTFSGVLRSHVKGAALISRIGGEEFVLILRQKHNSDVLALADTIRKAFSAIVFEASAG-D 332

Query: 216 IHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255
              T SAGIA  C    E   T+  RAD ALY AK  GRN+V
Sbjct: 333 FSTTTSAGIA-FCMPGNEDFQTVFRRADAALYRAKHLGRNKV 373


>gi|299068784|emb|CBJ40024.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum CMR15]
          Length = 488

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 106/235 (45%), Gaps = 21/235 (8%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           + +F+A      +I+  +     + G+         LV++   ++L + Y+    L+   
Sbjct: 263 YPLFVAVGTATEDIYANWKARAWWIGM---------LVVLFNVVTLAMAYLFAQHLERRI 313

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147
               R ++L+  D L+GL N  A    L +         + LS++  D+D+FK  ND++G
Sbjct: 314 EEQRRHAELAATDALTGLANRRALDERLDAEWRRAARERQPLSVLMIDVDHFKAYNDHYG 373

Query: 148 HPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           HP GD  +  ++  +      P     R GGEEF     GS    A+++A  +R  I   
Sbjct: 374 HPDGDAALQAVARCIQANLRRPGDLATRYGGEEFCVVLPGSDLDSASVVAETIRHAILVL 433

Query: 207 QINISSGPSIHITIS----AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I  +   S  +T+S    +G+     ++  +T+   AD  LY AK SGRNR + 
Sbjct: 434 NIPHARSASAVLTVSIGAASGMPASSGEQRAATLTRAADAQLYRAKTSGRNRTMS 488


>gi|115359701|ref|YP_776839.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           AMMD]
 gi|115284989|gb|ABI90505.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           AMMD]
          Length = 324

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 9/179 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           + +E   +  ++ + +  D L+G+ N   F + LG        Y   LS++ FD+D+FK 
Sbjct: 147 MQREREEAVAKLREHANRDGLTGIANRRFFEARLGDEFARWQRYGGDLSMLLFDLDHFKT 206

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH  GD V+   + ++  +  +    GR GGEEFA     ++  EA  +A+ +R 
Sbjct: 207 INDRFGHAAGDAVLRETARRVASIVRSQDTFGRFGGEEFALLLPCTNLDEAMRVADKVRD 266

Query: 202 IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I ++ ++ + G S+ +T S G A           ++  AD ALY AK+ GR+R + ++
Sbjct: 267 AIGSTPVD-AEGVSVPVTASVGGACATVGATAPDVLVNEADTALYRAKRLGRDRSIAYT 324


>gi|330820549|ref|YP_004349411.1| Diguanylate cyclase [Burkholderia gladioli BSR3]
 gi|327372544|gb|AEA63899.1| Diguanylate cyclase [Burkholderia gladioli BSR3]
          Length = 505

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 12/161 (7%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N  +  +SL             L+I+F DID+FK+ ND +GH +GD+V+A +S
Sbjct: 339 DSLTGLPNRRSLDASLEREWRRAVRARRPLAILFVDIDHFKRYNDEYGHTLGDEVLASVS 398

Query: 160 DQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
            ++      +   V R GGEEF      +    A  +A  +R  +    I  +   S ++
Sbjct: 399 ARIAQQALRSHDVVARYGGEEFVVVLPDTDSAGARTVAERIRDSVRQLGIEHAGAESGYV 458

Query: 219 TISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T+S G+A    +  +   ++ +I  ADQALY AK SGRNRV
Sbjct: 459 TVSVGVATWRPDAGYPTNVAVVIDAADQALYRAKASGRNRV 499


>gi|323490722|ref|ZP_08095924.1| GGDEF domain-containing protein [Planococcus donghaensis MPA1U2]
 gi|323395604|gb|EGA88448.1| GGDEF domain-containing protein [Planococcus donghaensis MPA1U2]
          Length = 410

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 8/191 (4%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           L+L  I  ++L +  +     ++L  ID  +G+ N+  F   +          N  LS++
Sbjct: 211 LILFLIVPALLLQNLLQKANSAELIYIDAKTGIYNYRHFDEKINELYKKSQKNNTSLSLI 270

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F D+D+ + IN+ +GH  GD  I  +         +   V R GGEEF      +++ EA
Sbjct: 271 FGDMDFLRNINNTYGHSTGDTAIIAVGKVFKQSQKSKFTVARFGGEEFVMLLPETTKAEA 330

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSG 251
              A ++R+ ++N  +   +   + +TIS G+A        I ++I  AD+ALY AK+ G
Sbjct: 331 FCQAEEIRQNVQNLDVRSEANEKVSLTISLGVATYPEDATDIHSLIKTADEALYEAKRKG 390

Query: 252 RNRVVCFSDIE 262
           RNRV  +   E
Sbjct: 391 RNRVSLYEVAE 401


>gi|302877367|ref|YP_003845931.1| response regulator receiver modulated diguanylate cyclase
           [Gallionella capsiferriformans ES-2]
 gi|302580156|gb|ADL54167.1| response regulator receiver modulated diguanylate cyclase
           [Gallionella capsiferriformans ES-2]
          Length = 632

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 8/169 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           EL +S  R+  L+  D L+GL N    +  L             +  +  DID+FK +ND
Sbjct: 460 ELALSNKRLQTLALTDALTGLPNRRYGMERLEQEWAIAMRAGRPVCCMMVDIDHFKAVND 519

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH +GD+ +  ++  L         V RLGGEEF      S  +     A  LR+ + 
Sbjct: 520 NYGHQLGDEALKLVALSLQQAARKQDVVCRLGGEEFMVICPDSDLRAGYTYAERLRQHVA 579

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
              I  + G S+ +T+S G+ +  + +    ++++AD  LY AK SGRN
Sbjct: 580 AQPIQ-AQGKSLQLTVSIGLTDNANLDSTEAMLHQADTRLYAAKASGRN 627


>gi|254298091|ref|ZP_04965544.1| diguanylate cyclase [Burkholderia pseudomallei 406e]
 gi|157807902|gb|EDO85072.1| diguanylate cyclase [Burkholderia pseudomallei 406e]
          Length = 454

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
            +L+EL  +  ++  L+  D L+G  N   FI  + S            S++  D+D FK
Sbjct: 277 GVLQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFK 336

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            INDN+GH VGD V+     Q +        + R+GGEEF           A+ +A  +R
Sbjct: 337 TINDNYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVR 396

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
             I N+   I  G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV 
Sbjct: 397 TTIANASFGI-DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 453


>gi|261210905|ref|ZP_05925195.1| GGDEF family protein [Vibrio sp. RC341]
 gi|260839880|gb|EEX66480.1| GGDEF family protein [Vibrio sp. RC341]
          Length = 443

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 91/166 (54%), Gaps = 15/166 (9%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+G+LN  AF   L          N KL+++FFD+D FK+IND  GH VGD V+
Sbjct: 269 LSERDSLTGILNRRAFKQQLSQALVKAKRSNMKLALLFFDLDKFKEINDTKGHEVGDIVL 328

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-P 214
             ++ +L        F GRLGG+EF    L   +  + +L N   ++++  QI I +   
Sbjct: 329 QQIAQRLKGTIREADFCGRLGGDEF-VVCLDILQDHSGVL-NKAYQLLDKLQIPIQANEE 386

Query: 215 SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S++I +S GIA   E+  +  +S ++  AD+A+YVAK    + + C
Sbjct: 387 SLNIGVSIGIALYPEQASQ--MSELLRIADEAMYVAKHQSGSTIYC 430


>gi|325284815|ref|YP_004264277.1| diguanylate cyclase [Deinococcus proteolyticus MRP]
 gi|324316530|gb|ADY27642.1| diguanylate cyclase [Deinococcus proteolyticus MRP]
          Length = 355

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 107/238 (44%), Gaps = 29/238 (12%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR 99
           A ++F+ +IF F+       G+         L  +S  I+LLL +  GS   EL     R
Sbjct: 128 AYLVFLVSIFYFH-------GVH-------QLPYLSAGITLLLLHYVGSHSYELLNVRQR 173

Query: 100 ISQLSRI---DCLSGLLNHSAFISSLGSYNEKL---------SIVFFDIDYFKQINDNFG 147
              L+ +   D L+GLLN       L    +++         +++  DID+FK IND  G
Sbjct: 174 AQHLAHLAAYDHLTGLLNRYGMEEKLRELWDRVQSHGNGDDATLLLLDIDHFKAINDQHG 233

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD+V+  +S  L         VGR GGEEF       S  EA +L + L   +  + 
Sbjct: 234 HDVGDRVLRRVSRALTEACPEGQ-VGRWGGEEFLVVLPPISPSEAKLLPSRLTACLAATG 292

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             I  G    +T+S G  +    + +  +I  ADQ LY AK+ GR+RV   S     T
Sbjct: 293 RAIPGGQP--VTLSGGGVQFSEADSLPQLIALADQRLYAAKRLGRDRVEWSSAANPQT 348


>gi|317049092|ref|YP_004116740.1| diguanylate cyclase [Pantoea sp. At-9b]
 gi|316950709|gb|ADU70184.1| diguanylate cyclase [Pantoea sp. At-9b]
          Length = 570

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 84/159 (52%), Gaps = 8/159 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+    + D ++ LLN     + L    +  +  +++  DID+FK++NDNFGH VGD+VI
Sbjct: 400 RLKSEVQTDPMTNLLNRRGLGAVLDYFHAMRQPFAVLALDIDHFKRVNDNFGHDVGDEVI 459

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L         V R GGEEF     G+  +EA  LA  LRK I ++ I+      
Sbjct: 460 KKVAQALRNSARQTDVVCRNGGEEFLMLLPGTPAEEARHLAERLRKNIADNWIDKVG--- 516

Query: 216 IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
            +ITIS GIA  +  K      + +AD ALY AK +GRN
Sbjct: 517 -NITISVGIALWQPEKGTQEQSLKQADAALYQAKNAGRN 554


>gi|163849939|ref|YP_001637982.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163661544|gb|ABY28911.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 574

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 85/179 (47%), Gaps = 9/179 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQI 142
           ++ L    + +  L+  D L+GLLN  AF+       S    Y   + ++  DID+FK++
Sbjct: 387 VRRLGADLHAMQVLADTDALTGLLNRRAFLPLANDAMSYFMRYRRSICVLMIDIDHFKRV 446

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD+VI  +   +         V R GGEEF      +  Q A I A  +R+ 
Sbjct: 447 NDLYGHAAGDEVIRQVGRIIRDAIRATDKVARFGGEEFVVLLRETDLQGAVIFAERIRQT 506

Query: 203 IENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  +      G  +  TIS G+A      + I   I RAD+ALY AK  GRN V  F D
Sbjct: 507 VAGTVFE-PEGQCLRATISIGMAGAEVTDDDIDHTIERADRALYAAKSGGRNCVRTFED 564


>gi|217974216|ref|YP_002358967.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella baltica OS223]
 gi|217499351|gb|ACK47544.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS223]
          Length = 921

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 89/171 (52%), Gaps = 10/171 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++ L+  D L+ L N   F+  L          N +L+ V  D+D FK IND+FGH +G
Sbjct: 492 QLTHLAYFDPLTHLPNRMKFMMQLKQEVRQAKRLNLQLATVMIDVDLFKHINDSFGHSIG 551

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINI 210
           D+++  L+ +L    G    + R+GG+EF A   G    E A +A N LR++ E   I +
Sbjct: 552 DEMLVELAKRLRSQVGDQDVLSRIGGDEFVALISGIDNSEDATVAINQLRQVFEQPFI-V 610

Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           S+G  + +T S G++          T++  AD A+Y AK  GRN    +++
Sbjct: 611 STGDHLRLTASMGVSLYPSDGADADTLLRNADAAMYRAKNDGRNNYAFYTE 661


>gi|71282021|ref|YP_267299.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71147761|gb|AAZ28234.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 613

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 108/220 (49%), Gaps = 14/220 (6%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L     L  I V N+ L+I  +T+ +++  I G+    L+ S+ R+  LS  D L+G+ N
Sbjct: 387 LAAEQALSNIKVANIQLIITVMTLIIIMLIIWGA---RLWRSHKRVKALSEYDELTGIYN 443

Query: 115 HSAF----ISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
              F    +S+L    S  + LS++ FD+D FK+INDNFGH  GD  +         +  
Sbjct: 444 RRHFTQIAVSTLKYCQSAEQDLSLIMFDLDNFKKINDNFGHICGDWALKETIRVCETIGR 503

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDLRKIIENSQINISSGPSIHITISAGIAE 226
                 RLGGEEF    L S   E A+L A   R  IEN+ I   SG    IT S G+ +
Sbjct: 504 KNDIFSRLGGEEF-CILLPSCNIEVAVLRAESCRAAIENT-ITEESGNDFSITASFGVTD 561

Query: 227 RCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                  +  ++  AD A Y +K +GRNRV  F   E+ T
Sbjct: 562 VARSGYNLEKLLIDADFAAYESKHAGRNRVTVFEPQEDET 601


>gi|61657342|emb|CAI44260.1| respons regulator [Thermotoga naphthophila RKU-10]
          Length = 479

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 8/158 (5%)

Query: 104 SRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           S  D L+GL N  A   F+  +    + +++   DID FK+IND FGHPVGD+V+  +++
Sbjct: 324 SETDGLTGLFNKRAIMRFLEEVLRSGKNIAVAMMDIDDFKKINDTFGHPVGDEVLRAVAN 383

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINISSGPSIHIT 219
            L     +   VGR GGEEF      + E++A +   N + + I N       G    +T
Sbjct: 384 ILRETVKSGK-VGRYGGEEF-MVVFETGERDAVVKTMNSIMENIRNFDWQKIFGSEKKVT 441

Query: 220 ISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +S G+A  +    P+  +I  AD+ LY AK+SG++R V
Sbjct: 442 LSGGVAFSKKESSPVE-LIEEADKKLYTAKRSGKDRYV 478


>gi|238752511|ref|ZP_04613986.1| hypothetical protein yrohd0001_19570 [Yersinia rohdei ATCC 43380]
 gi|238709274|gb|EEQ01517.1| hypothetical protein yrohd0001_19570 [Yersinia rohdei ATCC 43380]
          Length = 415

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 82/159 (51%), Gaps = 13/159 (8%)

Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N   F        +    YN+  S++  D+D+FK IND  GH  GD+V+  L+
Sbjct: 260 DPLTNLGNRRQFFPLVEQAYTQSQRYNQNFSLILLDVDHFKSINDQLGHHKGDEVLILLA 319

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHI 218
             L  +      V R GGEEFA     ++ Q A  LA  +R+ I+   Q N+ +     +
Sbjct: 320 RTLESIVRESDSVFRWGGEEFAILLPLTNLQGALQLAESIRETIQMICQPNLPT-----L 374

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           T+S G+A+    E   ++  R D+ALY AK +GRNRV+ 
Sbjct: 375 TVSLGVAQHQVGEDTDSLFKRMDEALYRAKAAGRNRVLA 413


>gi|149925096|ref|ZP_01913407.1| FHA/GGDEF domain protein [Plesiocystis pacifica SIR-1]
 gi|149814024|gb|EDM73657.1| FHA/GGDEF domain protein [Plesiocystis pacifica SIR-1]
          Length = 307

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 10/162 (6%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N   F + L S       + + LS+V FDID+FKQIND++GH  GD V+  L+
Sbjct: 138 DRLTGVFNRGYFNNRLESDVAFALRHGKPLSLVIFDIDFFKQINDDYGHAAGDAVLRDLA 197

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           +++     +     R GGEEF           A+  AN +++++      + +G  I I+
Sbjct: 198 ERVQGTTRSEDIFARYGGEEFVLICRDVDALRASRAANRIKELVSGKPFRL-AGRDIEIS 256

Query: 220 ISAGIAERCH-KEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
           +S G+++     EP    ++  AD ALY AK++GRNRV  + 
Sbjct: 257 VSLGVSDLSMLLEPSAQALVEAADSALYAAKRNGRNRVEIYD 298


>gi|77460528|ref|YP_350035.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1]
 gi|77384531|gb|ABA76044.1| putative GGDEF domain membrane protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 350

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 100/210 (47%), Gaps = 16/210 (7%)

Query: 59  YGLEYILVENLSLVIISITI----SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           +G+ + L    + V   + +     L LG +   +  +L      +S LSR D L+GLLN
Sbjct: 135 FGVHFTLTATQTQVWACLPMLTLYPLALGMVCYRLAIKLAEHKRTLSALSRTDSLTGLLN 194

Query: 115 HSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
           H A+   L         +N +  +   DID+FK IND++GH VGD V+  LS +L  V  
Sbjct: 195 HGAWKDLLHLKFQQCRQHNSQAILALIDIDHFKSINDSYGHIVGDAVLRQLSHELKFVLD 254

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
                GR GG+EF          +A  L   LR+ ++  +    S   + +++S G+A R
Sbjct: 255 ESKLAGRYGGDEFCVILPNLPLSKAEALMEQLRQALDRYRHPDVS--ELRVSLSIGLA-R 311

Query: 228 CHKEPISTIIY--RADQALYVAKKSGRNRV 255
                   + +   +D+ALY AK +GRN +
Sbjct: 312 YQTSYADALEWFEDSDKALYTAKHTGRNTI 341


>gi|315266684|gb|ADT93537.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS678]
          Length = 920

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 10/171 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++ L+  D L+ L N   F+  L          N +L+ V  D+D FK IND+FGH +G
Sbjct: 491 QLTHLAYFDPLTHLPNRMKFMMQLKQEVRQAKRLNLQLATVMIDVDLFKHINDSFGHSIG 550

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINI 210
           D+++  L+ +L    G    + R+GG+EF A   G    E A +A N LR++ E   I +
Sbjct: 551 DEMLVELAKRLRSQVGDQDVLSRIGGDEFVALISGIDNNEDATVAINQLRQVFEQPFI-V 609

Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           S+G  + +T S G++   +      T++  AD A+Y AK  GRN    +++
Sbjct: 610 STGDHLRLTASMGVSLYPNDGTDADTLLRNADAAMYRAKNDGRNNYAFYTE 660


>gi|307726170|ref|YP_003909383.1| diguanylate cyclase [Burkholderia sp. CCGE1003]
 gi|307586695|gb|ADN60092.1| diguanylate cyclase [Burkholderia sp. CCGE1003]
          Length = 607

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 93/190 (48%), Gaps = 25/190 (13%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S +  L +    +  L+  D L+GL N + F+  L           E L+++F D+D FK
Sbjct: 394 SQMDALHVKQRELVHLATHDVLTGLPNRTLFMEKLERAIQDATRRREGLAVLFVDLDRFK 453

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA------I 194
           QIND FGH VGDKV+  ++ +L  V  +   V RLGG+EF     G    EAA      I
Sbjct: 454 QINDQFGHSVGDKVLVAVARRLKQVLHSADVVARLGGDEFIVLIEGPRSAEAAPGVASRI 513

Query: 195 LANDLRKIIENSQINISSGPSIHITI---SAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           +     +I+ + Q  ++ G SI I+     +G AE         ++  AD A+YVAK  G
Sbjct: 514 MTTLNEEIVMDGQ-GMTVGASIGISQFPDDSGTAE--------ELLLNADAAMYVAKSGG 564

Query: 252 RNRVVCFSDI 261
           R   + + D+
Sbjct: 565 RCAYLRYQDV 574


>gi|218509426|ref|ZP_03507304.1| probable two-component response regulator protein [Rhizobium etli
           Brasil 5]
          Length = 379

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 91/177 (51%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKL------SIVFFDIDYFKQIND 144
           E      ++   +  D L+GL N   F  +     NE L      S+   DID+FK++ND
Sbjct: 197 ETLAQMRQLRAAAACDYLTGLYNRRYFYDNGPKLVNECLRLKVPSSVAILDIDHFKRLND 256

Query: 145 NFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH +GDKV+  ++++L  +F G+   + RLGGEEFA          A  L +++R  I
Sbjct: 257 TYGHEIGDKVLKAVANRLFTIFEGSDNLLSRLGGEEFAILFPQMDSAAATKLCDEIRSDI 316

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              ++  +    + +TIS GIAE    E     +  ADQ LY+AK  GRN+V  +SD
Sbjct: 317 SRLKV-TADDEELGVTISIGIAEIGGYETFENYLNAADQFLYMAKHRGRNQV--YSD 370


>gi|134283392|ref|ZP_01770092.1| ggdef domain protein [Burkholderia pseudomallei 305]
 gi|134245141|gb|EBA45235.1| ggdef domain protein [Burkholderia pseudomallei 305]
          Length = 454

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 85/175 (48%), Gaps = 9/175 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           LKEL  +  ++  L+  D L+G  N   FI  + S            S++  D+D FK I
Sbjct: 279 LKELQHTNQKLEYLASTDPLTGASNRRKFIEQMQSEIARAKCDGTAFSLLALDLDNFKTI 338

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           NDN+GH +GD V+     + V        + R+GGEEF           A+ +A  +R  
Sbjct: 339 NDNYGHQIGDVVLRNFVRRCVAAIRPCDHIARVGGEEFMVLLPRMFADAASEIAERVRAA 398

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           I N+   I  G  I +T+S G+++     + +  II  AD+ LY AK  GRNRVV
Sbjct: 399 IANASFGI-GGKRIGVTVSIGVSQYGRDGDTLDDIINAADKLLYRAKNEGRNRVV 452


>gi|160874448|ref|YP_001553764.1| PAS/PAC and GAF sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|160859970|gb|ABX48504.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS195]
          Length = 921

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 10/171 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++ L+  D L+ L N   F+  L          N +L+ V  D+D FK IND+FGH +G
Sbjct: 492 QLTHLAYFDPLTHLPNRMKFMMQLKQEVRQAKRLNLQLATVMIDVDLFKHINDSFGHSIG 551

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINI 210
           D+++  L+ +L    G    + R+GG+EF A   G    E A +A N LR++ E   I +
Sbjct: 552 DEMLVELAKRLRSQVGDQDVLSRIGGDEFVALISGIDNNEDATVAINQLRQVFEQPFI-V 610

Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           S+G  + +T S G++   +      T++  AD A+Y AK  GRN    +++
Sbjct: 611 STGDHLRLTASMGVSLYPNDGTDADTLLRNADAAMYRAKNDGRNNYAFYTE 661


>gi|126173489|ref|YP_001049638.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS155]
 gi|125996694|gb|ABN60769.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS155]
          Length = 921

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 10/171 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++ L+  D L+ L N   F+  L          N +L+ V  D+D FK IND+FGH +G
Sbjct: 492 QLTHLAYFDPLTHLPNRMKFMMQLKQEVRQAKRLNLQLATVMIDVDLFKHINDSFGHSIG 551

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINI 210
           D+++  L+ +L    G    + R+GG+EF A   G    E A +A N LR++ E   I +
Sbjct: 552 DEMLVELAKRLRSQVGDQDVLSRIGGDEFVALISGIDNNEDATVAINQLRQVFEQPFI-V 610

Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           S+G  + +T S G++   +      T++  AD A+Y AK  GRN    +++
Sbjct: 611 STGDHLRLTASMGVSLYPNDGTDADTLLRNADAAMYRAKNDGRNNYAFYTE 661


>gi|301025565|ref|ZP_07189090.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
 gi|300395946|gb|EFJ79484.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
          Length = 346

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 5/162 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
           NR+  L+  D L+G+ N  A  S L    +     +++  D+D+FK+ ND +GHP GD+ 
Sbjct: 182 NRLDALAHRDPLTGIANRRAMNSILHDAMDNGGSFALIMLDVDFFKRYNDTYGHPAGDRC 241

Query: 155 IAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212
           +  ++D L      +   V R GGEEFA     ++  EA  +A  +++ ++ + I + +S
Sbjct: 242 LIQVADALQRSTRQSEDVVVRYGGEEFAIILFNATLPEAETVAARVKQELKLAAIPHQAS 301

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +  +T+S GI      +    II  AD ALY AK+SGRNR
Sbjct: 302 AVNAFVTVSQGITCSAPAKTAEQIISDADAALYRAKESGRNR 343


>gi|157165714|ref|YP_001467045.1| GGDEF domain-containing protein [Campylobacter concisus 13826]
 gi|112800429|gb|EAT97773.1| diguanylate cyclase [Campylobacter concisus 13826]
          Length = 524

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 83/160 (51%), Gaps = 8/160 (5%)

Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S+ D L+ +    A +S +         Y    SI F DID+FK+IND +GH  GD +++
Sbjct: 359 SKEDFLTKVATKRALMSEIQRIEEAYKRYGTDYSICFVDIDFFKKINDTYGHEAGDVILS 418

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++  L        FVGR GGEEF      +S ++       LR +IEN +  I     I
Sbjct: 419 AVAQVLKKNARKVDFVGRYGGEEFVILLPSTSLKDGVRFGEKLRSMIENFKF-IYKNERI 477

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +TIS+G+A R      +  +  AD+ LY++K+ GRN+V+
Sbjct: 478 KVTISSGVATRSANLSDTMTLEGADKMLYLSKEGGRNQVM 517


>gi|114562656|ref|YP_750169.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114333949|gb|ABI71331.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 341

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 6/156 (3%)

Query: 107 DCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+ +LN  AF     + +GS      ++  DID+FK  NDNFGH +GD V+  ++ ++
Sbjct: 182 DALTNVLNRRAFNTDIEAQIGSAPAGTCMILIDIDHFKTFNDNFGHQLGDLVLKTVAKRI 241

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITI 220
                  + + R GGEEFA     S  + A  LA  +R+ +E   +       +   IT 
Sbjct: 242 QEACRDGIKLYRFGGEEFAIIVPSSQFRVARQLAEGIRRALEKLSVKDRRSDKVIDSITA 301

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S G+AE   K+ +S +I   D+ LY AK+ GRNRV+
Sbjct: 302 SFGVAEWKAKQSVSQLIEATDKLLYEAKRLGRNRVM 337


>gi|311279104|ref|YP_003941335.1| diguanylate cyclase [Enterobacter cloacae SCF1]
 gi|308748299|gb|ADO48051.1| diguanylate cyclase [Enterobacter cloacae SCF1]
          Length = 564

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 9/160 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N           + S     + ++++  D+D FK IND FGH  GD+V+A  +
Sbjct: 398 DGLTRLFNRGTLFERANTAMKSCREQQKPIAVIQMDLDCFKSINDRFGHQAGDRVLAHTA 457

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +    G+    GR+GGEEF     G++++ A + A  +R+ I + ++ +  G  + I+
Sbjct: 458 GLISSRIGSADLAGRVGGEEFCIVLPGATKEAACLTAERIRERINSRELLLGKGVMLRIS 517

Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            S G+  ++   +  +  +   AD+ LY AK+ GRNRV C
Sbjct: 518 ASFGVSGSDESGQYDVEFLQSVADKRLYQAKQDGRNRVCC 557


>gi|269102594|ref|ZP_06155291.1| GGDEF family protein [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268162492|gb|EEZ40988.1| GGDEF family protein [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 434

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKL----SIVFFDIDYFKQIN 143
           K LF    R  +L+ ID L+   N +A   ++  +  +++ +    S+++ DID+FK+IN
Sbjct: 263 KVLFEKSLRFEELAYIDPLTKAKNRNAVSDWVRQVVEHSKDMAQPFSVIYIDIDFFKKIN 322

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD+V+A  +D L         + R GGEEF      +S    A  A  LR+ I
Sbjct: 323 DKYGHGRGDEVLAKFADLLRRNIDKSDMLVRWGGEEFVVFCPSTSLGVVAEKAELLREAI 382

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              Q     G    +T S G+A+    E  + ++ RAD+ALY AK+ GRNRV
Sbjct: 383 AEYQW----GNEFSVTCSLGVAQ-LENEEFNRLMERADEALYKAKERGRNRV 429


>gi|258622540|ref|ZP_05717562.1| sensory box/GGDEF family protein [Vibrio mimicus VM573]
 gi|258585240|gb|EEW09967.1| sensory box/GGDEF family protein [Vibrio mimicus VM573]
          Length = 308

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 86/171 (50%), Gaps = 13/171 (7%)

Query: 98  NRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
            ++ QL+  D L+ L N         SAF  +  S  + LS +  DID FKQIND+FGH 
Sbjct: 138 EQLYQLANTDALTQLCNRRKLWADFRSAFARAKHS-KQPLSCISIDIDNFKQINDHFGHD 196

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+ FL+     +       GR+GGEEF      +    A  LA  +R+    SQ +
Sbjct: 197 KGDEVLCFLAQLFYELTSEHHICGRVGGEEFIIVLEDTPVATAFALAEQIRQRF--SQHS 254

Query: 210 ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                  H+ + AG+A  R      + I  R+DQALY AK+SGRNR   ++
Sbjct: 255 FFEQKE-HVYLCAGVATMRLSDHDFTDIYRRSDQALYQAKRSGRNRCCIYN 304


>gi|149377858|ref|ZP_01895588.1| probable transmembrane protein [Marinobacter algicola DG893]
 gi|149357860|gb|EDM46352.1| probable transmembrane protein [Marinobacter algicola DG893]
          Length = 784

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 85/168 (50%), Gaps = 9/168 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLS---IVFFDIDYFKQINDNFGHPV 150
            R+S  +  D L+GLLN  AF SSL       N+K +   ++  D+DYFK +ND  GH +
Sbjct: 608 ERLSWEATHDSLTGLLNRRAFNSSLVKCLADANKKTAASVMMLIDLDYFKPVNDEGGHLL 667

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD ++  LSD L         V RLGG+EF        +Q A  LA  +R  IE  +I  
Sbjct: 668 GDDLLGRLSDLLTQSVRQSDTVARLGGDEFGIILPACGQQRAVELAEKIRAGIEAMRIE- 726

Query: 211 SSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
             G +  +T S G+ E    +     ++ RAD+  Y AK  GRNRVV 
Sbjct: 727 QDGKTFGVTASIGLTEMSDADTGPREVVARADEGTYAAKAQGRNRVVA 774


>gi|113868397|ref|YP_726886.1| GGDEF domain-containing protein [Ralstonia eutropha H16]
 gi|113527173|emb|CAJ93518.1| GGDEF domain protein [Ralstonia eutropha H16]
          Length = 419

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 12/171 (7%)

Query: 94  FISYNRISQL----SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
            ++++R+ ++    +R D L+ +L   AF   L +         + L++ F D+D+FK I
Sbjct: 218 LMAHDRLRRMLERRARHDDLTDVLLRGAFWEELEAACLRAERQRKPLTVAFVDLDHFKAI 277

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD V+   + QL   FG     GRLGGEEFA     ++ ++  +    L   
Sbjct: 278 NDVYGHLAGDSVLRHFAGQLRKNFGQLEVAGRLGGEEFAILMPDTALEQGRLACLRLATA 337

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +  +       P I  T+S G+A R   E    ++ RAD+ALY AK  GRN
Sbjct: 338 VRATPCPSEPDP-IAYTVSIGLAARQPGEGADALMRRADRALYDAKLKGRN 387


>gi|83716350|ref|YP_438601.1| GGDEF domain-containing protein [Burkholderia thailandensis E264]
 gi|83650175|gb|ABC34239.1| GGDEF domain protein [Burkholderia thailandensis E264]
          Length = 507

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 17/187 (9%)

Query: 85  ISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIV 132
           + G+ L    + + R     + +L+R D L+GL N  AF  +L S           LS++
Sbjct: 316 VGGTALLSRELRWRRHAELHLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLL 375

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQE 191
           F DID FK  ND++GH  GD V+  +   L + V      V R GGEEF         + 
Sbjct: 376 FVDIDQFKAYNDHYGHQAGDDVLREVGRCLALNVRRAADDVSRYGGEEFVITLPDIDAKS 435

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAK 248
           AA +A  +R+ + +  I     P   +T+S G+    H+      +T++  AD ALY AK
Sbjct: 436 AAAIAEHIRRAVYDLDIEHVRSPYARVTVSIGLVT-SHEHAAHSDTTLVKMADAALYQAK 494

Query: 249 KSGRNRV 255
            +GRNRV
Sbjct: 495 STGRNRV 501


>gi|298292251|ref|YP_003694190.1| diguanylate cyclase [Starkeya novella DSM 506]
 gi|296928762|gb|ADH89571.1| diguanylate cyclase [Starkeya novella DSM 506]
          Length = 414

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 86/173 (49%), Gaps = 8/173 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISS------LG-SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+GL N    I        LG +  ++ S++  DID FK INDN GH  GD
Sbjct: 236 LRHLAVSDPLTGLWNRRRLIEEGQRELELGATAGKECSLLIVDIDRFKSINDNHGHAAGD 295

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  ++ + +        + R+GGEEFA    G+S  EA  +A  L + I    + I  
Sbjct: 296 EVLRTVAQRGLSQLRRSDVMARIGGEEFAVLLPGTSALEARTIAARLLRAI-RVPVVIGD 354

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
              I +T S G      ++ +  ++ R D+ALY AK  GRNRVV   DI   T
Sbjct: 355 DVVIEVTASIGGTGSTPEDDMDALMARCDRALYAAKTGGRNRVVFDDDISPPT 407


>gi|258625575|ref|ZP_05720463.1| GGDEF family protein [Vibrio mimicus VM603]
 gi|258582168|gb|EEW07029.1| GGDEF family protein [Vibrio mimicus VM603]
          Length = 326

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 15/180 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQI 142
           +++ +Y  I   S  D L+GLLN             I+     N +L I   D+D+FK I
Sbjct: 132 KIYRNYTVILHESERDKLTGLLNRRTLEDRLRNTFAINPSAEGNHQLWIAMLDLDHFKAI 191

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+FGH +GD+++   + Q+   FG    + R GGEEF        EQ      +  R+ 
Sbjct: 192 NDHFGHMIGDEILLMFAQQMQHYFGPSSQLFRFGGEEFVIVFSSGDEQAINRTLDGFRRH 251

Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           I          P I  ++ SAG       + + TI+  AD+ALY AK+ GR++V C+ ++
Sbjct: 252 IRQHTF-----PRIGELSFSAGFCSLRPGDYLPTILDHADKALYYAKEHGRDQVHCYENL 306


>gi|257094919|ref|YP_003168560.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257047443|gb|ACV36631.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 530

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 25/173 (14%)

Query: 98  NR-ISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------------SIVFFDIDYFKQI 142
           NR ++QL+++D L+GL N         S NE+L              +++F DID+FK+I
Sbjct: 365 NRELAQLAQVDALTGLQNRK-------SANERLRLEFLRLQRSSNPYAVLFMDIDFFKEI 417

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD+V+  ++  L        FV R GGEEF A    ++ + A  +A  +R  
Sbjct: 418 NDTYGHETGDQVLRHMATVLTASLRQTDFVARYGGEEFLAILSETNAEGALTIAEIVRSS 477

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +       +   ++ I ++  + E   +E   + + RAD ALY AK+ GRN V
Sbjct: 478 VAQQAFPGARQVTLSIGVAMALGEDKDEE---SAVRRADTALYRAKEDGRNAV 527


>gi|229587663|ref|YP_002869782.1| hypothetical protein PFLU0085 [Pseudomonas fluorescens SBW25]
 gi|229359529|emb|CAY46370.1| conserved GGDEF domain protein [Pseudomonas fluorescens SBW25]
          Length = 684

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 86/163 (52%), Gaps = 8/163 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q + ID L+GL N +A+   L     +++++   LS+   D+D+FK+IND +GH  GD+V
Sbjct: 522 QKALIDPLTGLPNRAAWSERLDHEVNAWHQRGNSLSLAMLDLDHFKRINDGYGHLAGDRV 581

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +++ L        F+ R GGEEF      SS  +A      LR  IE    +    P
Sbjct: 582 LKIIANVLRKRLRPTDFIARFGGEEFVLLMPDSSLADALAAVEVLRGAIEACPFHFKGEP 641

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + IT+S G+A+    E     + RAD ALY AK +GRN+V  
Sbjct: 642 -VTITVSMGVAQFQPGERSDLALKRADAALYRAKAAGRNQVQA 683


>gi|78221296|ref|YP_383043.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter metallireducens GS-15]
 gi|78192551|gb|ABB30318.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter metallireducens GS-15]
          Length = 314

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 87/173 (50%), Gaps = 10/173 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           EL  S   +  LS  D L+ L N    +  +    ++       LS+V  DIDYFK+IND
Sbjct: 130 ELKRSNEMLRTLSITDPLTHLHNRRHLMEMVDKEFQRSSRKGAPLSLVILDIDYFKKIND 189

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+  L+D +     +     R GGEEF      +  QEA  +A  LR  ++
Sbjct: 190 TYGHQEGDRVLTILADIVRRRLRSYDLAARYGGEEFVLLLPETPVQEALSIAERLRLEVQ 249

Query: 205 NSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                 S G  + ITIS G+A       E I ++  +AD+ALY AK+ GRNRV
Sbjct: 250 EHVFEGSLG-GLVITISLGVATYPSSRVESIDSLFRQADEALYRAKQGGRNRV 301


>gi|254248940|ref|ZP_04942260.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
 gi|124875441|gb|EAY65431.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
          Length = 510

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 9/176 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           LK    +  ++ +L+  D L+GL N   F + L    ++       LS++F D+D+FK  
Sbjct: 326 LKRRQDAEAKLYRLAHTDSLTGLDNRGTFDTVLAKETQRASRSGRPLSVLFVDVDHFKAF 385

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GHP GD V+  ++  L          V R GGEEF      +    AA +A  +R+
Sbjct: 386 NDYYGHPAGDDVLRQVAQSLSRCLRRDSDQVARYGGEEFVVTLPDTDGPGAATVAEGIRR 445

Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
            I    I         +T+S G A     +   +T++ RAD+ALY AK  GRNRV+
Sbjct: 446 AISELGIEHVKSQYGRVTVSIGTATADDGRMNAATLLRRADEALYRAKSGGRNRVL 501


>gi|330831120|ref|YP_004394072.1| GGDEF domain-containing protein [Aeromonas veronii B565]
 gi|328806256|gb|AEB51455.1| GGDEF domain protein [Aeromonas veronii B565]
          Length = 614

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 95/188 (50%), Gaps = 11/188 (5%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEK 128
           + + +L G ++   +  L     R+ +L+  D L+G+ N        S  ++        
Sbjct: 426 LVVMVLCGVLALLTMGWLLDRNRRMRRLAFTDELTGINNRRRVLRQGSDMLALARRQGTP 485

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
             ++ FDID+FK+IND  GH  GD+V+ ++S            +GR GGEEF      +S
Sbjct: 486 FCLLVFDIDHFKRINDTLGHHQGDRVLQWVSRAADRQLRHQDQLGRTGGEEFLILLPDTS 545

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247
            +EA  +A  +R  + N  +    G S  +TIS G A  R   + ++ +I RAD ALY A
Sbjct: 546 LEEACRVAERIRHTVANRAL---PGMSYPVTISIGCASLRDDDQDLAALIQRADNALYRA 602

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 603 KEAGRNRV 610


>gi|297539643|ref|YP_003675412.1| diguanylate cyclase [Methylotenera sp. 301]
 gi|297258990|gb|ADI30835.1| diguanylate cyclase [Methylotenera sp. 301]
          Length = 327

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 97/186 (52%), Gaps = 8/186 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDID 137
           ++  + ++L  +  +   L+RID L+   N  AF  ++    E          +V  DID
Sbjct: 136 VNKELEQKLRDAKQKAETLARIDPLTNAYNRRAFFENVPRALEGALRKVTPFCLVMVDID 195

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FKQ+ND +GH  GD+ +  L + + +       + R GG+EF    L  ++++AA L +
Sbjct: 196 HFKQLNDVYGHNRGDEALTSLIEIMKINARASDLLYRFGGDEFVMVLLDCTDEQAAELIH 255

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +R  +  S I  S   +I +T S G+++      I ++++ AD+ALY  K  GR+RV  
Sbjct: 256 RIRVGLTASPIR-SGSTNILLTCSFGVSQARPDSTIESLMHEADEALYAGKSEGRDRVKL 314

Query: 258 FSDIEN 263
           + +++N
Sbjct: 315 YRNLKN 320


>gi|294341946|emb|CAZ90375.1| hypothetical protein; putative membrane protein [Thiomonas sp. 3As]
          Length = 523

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 11/172 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++  L+  D L+GL N   F       + +  +      I+  D+D+FKQIND +GHPV
Sbjct: 354 QQLRALAHTDPLTGLQNRRGFFAMVEHALRTRPAGQPGPCIMLIDLDHFKQINDRYGHPV 413

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+++   +  ++ +        R+GGEEF      +   +A  +A  +R+ +       
Sbjct: 414 GDEILVEFAQVVLSLLREGDVFARMGGEEFCILLAHTRASQALEVAERVREFVAAHPFQT 473

Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           S+G  + +++S GIA  C    + I  ++  ADQA+Y AK+ GRNR   + D
Sbjct: 474 SAG-VVRLSLSLGIAG-CDAPVQSIDRVLSMADQAMYRAKQGGRNRTELYCD 523


>gi|170681992|ref|YP_001743683.1| hypothetical protein EcSMS35_1629 [Escherichia coli SMS-3-5]
 gi|218700190|ref|YP_002407819.1| hypothetical protein ECIAI39_1839 [Escherichia coli IAI39]
 gi|170519710|gb|ACB17888.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           SMS-3-5]
 gi|218370176|emb|CAR17970.1| conserved hypothetical protein [Escherichia coli IAI39]
          Length = 296

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S            L ++  DID FK +ND +GH +GD V+  L
Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF       +++EA      + ++++N  I  S G  I+I
Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKADNDEEACRAGIRICQLVDNHAITHSEG-HINI 247

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291


>gi|39998465|ref|NP_954416.1| GGDEF/response regulator receiver domain-containing protein
           [Geobacter sulfurreducens PCA]
 gi|39985412|gb|AAR36766.1| GGDEF/response regulator receiver domain protein [Geobacter
           sulfurreducens PCA]
 gi|298507409|gb|ADI86132.1| response receiver-modulated diguanylate cyclase [Geobacter
           sulfurreducens KN400]
          Length = 308

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 94/180 (52%), Gaps = 16/180 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           EL  S   + +LS  D L+ L N    +  +    ++       LS+V  DIDYFK+IND
Sbjct: 130 ELKRSNELLRKLSITDPLTHLHNRRHLMEMVDKEFQRASRKGGALSLVILDIDYFKKIND 189

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GDKV+  L+D + +   +     R GGEEF      +  QEA  +A  LR  ++
Sbjct: 190 TYGHQEGDKVLVALADIVRLRLRSYDVAARYGGEEFVLLLPETPLQEAQAIAERLRLEVQ 249

Query: 205 NSQINISSGPSIH---ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +   ++  G S+H   ITIS G+A       E   ++  +AD+ALY AK++GRNRV   S
Sbjct: 250 D---HVFDG-SLHGQVITISLGVATYPSPRIEGTDSLFRQADEALYRAKQNGRNRVELMS 305


>gi|330810628|ref|YP_004355090.1| diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378736|gb|AEA70086.1| putative diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 361

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 87/187 (46%), Gaps = 21/187 (11%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-----------SIV 132
           YI G   +EL         LSR D L+GLLNH A+   L    ++            +I 
Sbjct: 171 YILGRQKRELLA-------LSRTDSLTGLLNHGAWKDRLNEEFQRCQRHPNDGAGRGAIA 223

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK IND +GH  GD V+  L   L         VGR GG+EF       +   A
Sbjct: 224 LIDIDHFKAINDTYGHVAGDIVLRQLGKMLKQNLRAADVVGRYGGDEFCVILPDLTLHNA 283

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSG 251
               + LR+    + ++    P++ +++S G+A        +T  +  ADQALY AK  G
Sbjct: 284 VQAMDGLRERF--ATLSYEQNPALKVSLSIGLAAFNPAYGDATHWLNDADQALYEAKTGG 341

Query: 252 RNRVVCF 258
           RNRV C+
Sbjct: 342 RNRVTCY 348


>gi|189424367|ref|YP_001951544.1| diguanylate cyclase [Geobacter lovleyi SZ]
 gi|189420626|gb|ACD95024.1| diguanylate cyclase [Geobacter lovleyi SZ]
          Length = 237

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 86/175 (49%), Gaps = 9/175 (5%)

Query: 90  LKELFISYNRISQL-SRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQ 141
           L+   ++ NR   L +RID ++GL N  A +       S    +    SI+  D+DYFK+
Sbjct: 61  LQTQLVNMNRSLDLATRIDPMTGLANRRAIMEMIEQEFSRAHRHQRPASIIMADLDYFKK 120

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  G   GD V+  +S  L           R GGEEF      +    A  +AN +R+
Sbjct: 121 VNDTHGFNTGDDVLVEVSRVLRGCLRNEDICSRWGGEEFLVLLPETQLDGALAVANKIRE 180

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  ++  ++  P I +TIS G+ E    + I   I RADQAL+ AK  GRNR +
Sbjct: 181 SVAMTEFKVNR-PGIQLTISLGVCEYKPDQNIFEAISRADQALFQAKLGGRNRAI 234


>gi|108763732|ref|YP_631891.1| GAF domain/GGDEF domain-containing protein [Myxococcus xanthus DK
           1622]
 gi|108467612|gb|ABF92797.1| GAF domain/GGDEF domain protein [Myxococcus xanthus DK 1622]
          Length = 710

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 15/172 (8%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y ++ +++  D L+GL NH  F       ++    Y  K S++  D+D+FK +ND +GHP
Sbjct: 526 YEQMERMATTDGLTGLYNHRTFQAKADEVLAQSRRYQRKFSLILTDVDHFKSVNDTYGHP 585

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+  ++  +  +      V R GGEEF      +  + A  ++  +R+ ++     
Sbjct: 586 TGDQVLKGVARIIKTMARDTDIVARYGGEEFVIIMPETDAKGAFTISERIREAVKAEVFQ 645

Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              GP + IT+S GIA        K+    +I  ADQ LY +K++GRN+ V 
Sbjct: 646 TEMGP-LRITMSLGIATFPDSAMEKQ---QLIDLADQCLYHSKRNGRNQSVT 693


>gi|309779657|ref|ZP_07674416.1| ggdef domain protein [Ralstonia sp. 5_7_47FAA]
 gi|308921598|gb|EFP67236.1| ggdef domain protein [Ralstonia sp. 5_7_47FAA]
          Length = 459

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 95/184 (51%), Gaps = 21/184 (11%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           + L  + +R+ + S +D L+ + N  AF     + +++       LS++  DID+FKQIN
Sbjct: 277 RALMAANHRLERQSLLDGLTQVGNRQAFDRCWAAESKRARRTGQPLSVLMVDIDHFKQIN 336

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGT-PM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           D +GH  GD  +  +++ L  V G  P   V R GGEEF      +    A ++A  +R+
Sbjct: 337 DTYGHGRGDACLVEVANILSRVAGKRPTDLVARYGGEEFVVLLADTERSRAKVIAEQVRR 396

Query: 202 IIENSQINISSGPSIH--ITISAGI---AERCHKEPI----STIIYRADQALYVAKKSGR 252
            +E + +     PS+   +T+S G+   A      P+    S  + +AD ALY AK++GR
Sbjct: 397 AVEQAAL---PAPSVRGVVTVSIGVAAYAPSADHAPVADATSEALMQADMALYDAKRAGR 453

Query: 253 NRVV 256
           N V+
Sbjct: 454 NAVM 457


>gi|330829722|ref|YP_004392674.1| sensory box/GGDEF domain-containing protein [Aeromonas veronii
           B565]
 gi|328804858|gb|AEB50057.1| Sensory box/GGDEF domain protein [Aeromonas veronii B565]
          Length = 431

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 114/253 (45%), Gaps = 26/253 (10%)

Query: 17  KNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI--LVENLSLVII 74
           K LE+  P  F      +F  F ++ I             P +    +  L  + S   +
Sbjct: 179 KRLETLLPQRFRANHETYFKAFSSSPI----------NSRPMHARASVMGLRRDGSEFPL 228

Query: 75  SITISLL-LGYIS--GSILKELFISYNRISQL---SRIDCLSGLLNHSAF-------ISS 121
            +TI+ + LG  +   +IL+++      + +L   +  D L+G+ N   F       +  
Sbjct: 229 EVTIAKINLGPTTEMTAILRDISERARLVEELKVAATTDPLTGIANRRRFNELVNAEMQR 288

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +   +S++  DID+FK++ND FGH  GD  I  L  ++         +GR GGEEF 
Sbjct: 289 CQRFGHTMSLLLIDIDHFKEVNDTFGHQQGDLAILSLVKRISKQLREVDMLGRWGGEEFI 348

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRA 240
                +S + A   A  +R  IE+    +     I +TIS GI A +   + +  ++ RA
Sbjct: 349 VLLPETSLELAWASAERIRLAIESQHHALEGALEISLTISIGISASKGSHDTVEKMVRRA 408

Query: 241 DQALYVAKKSGRN 253
           D ALY+AKK GRN
Sbjct: 409 DTALYLAKKQGRN 421


>gi|152982708|ref|YP_001353141.1| hypothetical protein mma_1451 [Janthinobacterium sp. Marseille]
 gi|151282785|gb|ABR91195.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 528

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L +   ++S+L R D L+G LN           I+        L I   D+D FK+IND 
Sbjct: 356 LELQLEQMSELVREDQLTGSLNRRGLDDVLEREIARADRRASPLCIAMLDLDDFKKINDK 415

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD+ +  L   +     T   + R GGEEF      +  +EA +    L++ +  
Sbjct: 416 YGHMAGDEALIHLVRVIKDTLRTMDVIARFGGEEFLIVLPDTPLEEAILTITRLQREL-T 474

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            QI + +   + +T SAG+A R  +E  + ++ RAD ALY AKK+G+NRV+
Sbjct: 475 KQIFMHNHTRLLMTFSAGVALRKEREDQAAMVKRADIALYEAKKAGKNRVI 525


>gi|303246638|ref|ZP_07332916.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
 gi|302491978|gb|EFL51856.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
          Length = 730

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 79/162 (48%), Gaps = 8/162 (4%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F  +L             LS++  DIDYFK  ND++GH  GD+ + FL+
Sbjct: 569 DALTGLKNRRFFDDALEREIAQALKQQSDLSLIMLDIDYFKFFNDSYGHAAGDEALRFLA 628

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           +Q+   F     + R GGEEF      +   E      +L + I  S I  +      IT
Sbjct: 629 EQMNKTFRHTDIICRYGGEEFVILMPHAKASECHARVLELLQTIARSTIQYAGRDLGTIT 688

Query: 220 ISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +S GI+      E    ++  AD+ALY AK+ GRNRVV + +
Sbjct: 689 LSVGISSWPSFVENPQELLSHADRALYQAKERGRNRVVLYGE 730


>gi|256831247|ref|YP_003159975.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
 gi|256580423|gb|ACU91559.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
          Length = 345

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 94/185 (50%), Gaps = 29/185 (15%)

Query: 102 QLSRIDCLSGLLNHSAF----ISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           ++S  D L+ L N  AF     ++L  Y      +S++F DID+FK  ND++GH +GD+ 
Sbjct: 163 EMSYTDSLTKLSNRRAFDRYYQTTLVEYMVTGNPMSLMFLDIDHFKDFNDSYGHRIGDQA 222

Query: 155 IAFLSDQLV---VVFGT----PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--- 204
           +  ++ +L      +GT      F  R GGEEF     G    EAA  A +LR IIE   
Sbjct: 223 LVTVASKLTGYAQKYGTVPNRSFFPARFGGEEFVVVLPGVGLGEAAEDAENLRTIIEDYN 282

Query: 205 ------NSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255
                 N Q+ +  G  I IT+S G+AE       E  + ++  AD+A+Y AK  GRNRV
Sbjct: 283 FIIRDHNGQV-LQKG--IKITVSIGVAELKKDWADEAGARLLDEADKAMYRAKGRGRNRV 339

Query: 256 VCFSD 260
              ++
Sbjct: 340 CTMNE 344


>gi|157147009|ref|YP_001454328.1| diguanylate cyclase AdrA [Citrobacter koseri ATCC BAA-895]
 gi|157084214|gb|ABV13892.1| hypothetical protein CKO_02786 [Citrobacter koseri ATCC BAA-895]
          Length = 365

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 97/199 (48%), Gaps = 23/199 (11%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSL 122
           SL +I I   LL  ++S     +L     R+  +S  D ++G+ N   +         + 
Sbjct: 171 SLPVIVI-YPLLFAWVSYQTATKLAEHKRRLQVMSMRDGMTGVYNRRHWEILLRNEFDNC 229

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
             Y+   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA 
Sbjct: 230 RRYHRDATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQMTLRGSDVIGRFGGDEFAV 289

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII--YR- 239
              G+    A    + + + +  + + +   P + + IS G+A      P++T I  YR 
Sbjct: 290 IMCGTPADNAIAAMSRVHERL--NALRLPCAPQVILRISVGVA------PLTTQIGHYRE 341

Query: 240 ----ADQALYVAKKSGRNR 254
               AD ALY AK +GRNR
Sbjct: 342 WLKSADMALYKAKNAGRNR 360


>gi|330821779|ref|YP_004350641.1| diguanylate cyclase/phosphodiesterase [Burkholderia gladioli BSR3]
 gi|327373774|gb|AEA65129.1| diguanylate cyclase/phosphodiesterase [Burkholderia gladioli BSR3]
          Length = 1065

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 64/175 (36%), Positives = 89/175 (50%), Gaps = 14/175 (8%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGH 148
           S  RI  L+  D L+ L N + F   LG+  E       +L+++F D+D FK IND FGH
Sbjct: 621 SEARIQFLAEHDVLTELPNRALFTRRLGTAIEQARHNDSRLAVLFIDLDRFKDINDTFGH 680

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKII-EN 205
             GD ++  +S +L+        V RLGG+EF       GS+   A +L   L  ++ E 
Sbjct: 681 HAGDGLLRSVSQRLLQSVRAGDTVSRLGGDEFTVLLGGAGSAADVAHLLDERLLPLMQEP 740

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            QI    G ++ +  S GIA    H E I T++  AD A+Y AK  GRN V  FS
Sbjct: 741 HQI---GGMTLQVACSIGIALYPDHGEDIETLMQNADAAMYRAKSGGRNLVKFFS 792


>gi|313617752|gb|EFR89993.1| ggdef domain-containing protein [Listeria innocua FSL S4-378]
          Length = 183

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 11/176 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISS-LGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           K+LF  Y + S L  +  LS +      I+  + + + +++++  DIDYFK IND +GH 
Sbjct: 11  KQLFQKYEQDSTLDYLTRLSNVRQFDEKINHVMDAGSRQVTLMLIDIDYFKNINDTYGHD 70

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GD ++     QL ++       G    R GGEEF+   L    ++    A  +RK  E 
Sbjct: 71  AGDAILK----QLAIILKRNTSDGSEAFRNGGEEFSIVLLDCPIEKGNFFAEQVRKETEE 126

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSD 260
               I SG  + ITIS G++        S  +++ AD+ALY AK +GRNR VC +D
Sbjct: 127 HDFMIPSGKLVKITISVGVSSSKDGANTSEGLFKSADEALYKAKLTGRNR-VCIAD 181


>gi|316933637|ref|YP_004108619.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris DX-1]
 gi|315601351|gb|ADU43886.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris DX-1]
          Length = 457

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 9/167 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N     S L +  E+       L+++  DID+FK IND++GH  GD V
Sbjct: 290 EMAITDGLTGLHNRRYMESHLATLAEQASARGKPLALMILDIDFFKSINDSYGHDAGDDV 349

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   + ++           R GGEEF      +    A ++A  LR+ I      +  G 
Sbjct: 350 LREFALRIKKSIRGIDLACRYGGEEFVIVMPETDLHVAQMVAERLRRAIAGEPFAVEKGT 409

Query: 215 -SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I +TIS G++    K EPI  ++ RAD ALY AK  GRNRVV  +
Sbjct: 410 RRIEVTISIGLSTLERKGEPIPDLLKRADTALYRAKHDGRNRVVAAA 456


>gi|213021826|ref|ZP_03336273.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 141

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 76/134 (56%), Gaps = 3/134 (2%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF     G++
Sbjct: 1   MSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEFCIVLPGAT 60

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYV 246
           + +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +   AD+ LY 
Sbjct: 61  KAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQSLADKRLYY 120

Query: 247 AKKSGRNRVVCFSD 260
           AK+SGRNR +C SD
Sbjct: 121 AKQSGRNR-ICASD 133


>gi|167615088|ref|ZP_02383723.1| GGDEF domain protein [Burkholderia thailandensis Bt4]
 gi|257141662|ref|ZP_05589924.1| GGDEF domain-containing protein [Burkholderia thailandensis E264]
          Length = 487

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 91/188 (48%), Gaps = 19/188 (10%)

Query: 85  ISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIV 132
           + G+ L    + + R     + +L+R D L+GL N  AF  +L S           LS++
Sbjct: 296 VGGTALLSRELRWRRHAELHLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLL 355

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQE 191
           F DID FK  ND++GH  GD V+  +   L + V      V R GGEEF         + 
Sbjct: 356 FVDIDQFKAYNDHYGHQAGDDVLREVGRCLALNVRRAADDVSRYGGEEFVITLPDIDAKS 415

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVA 247
           AA +A  +R+ + +  I     P   +T+S G+        H +  +T++  AD ALY A
Sbjct: 416 AAAIAEHIRRAVYDLDIEHVRSPYARVTVSIGLVTSHEHAAHSD--TTLVKMADAALYQA 473

Query: 248 KKSGRNRV 255
           K +GRNRV
Sbjct: 474 KSTGRNRV 481


>gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans]
 gi|133738843|emb|CAL61890.1| conserved hypothetical protein, GGDEF domain [Herminiimonas
           arsenicoxydans]
          Length = 519

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 82/165 (49%), Gaps = 14/165 (8%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F ++L             L+++  D+D+FK+ ND +GHP GD+ +  +S
Sbjct: 350 DSLTGLANRRRFDAALDDEFARAMRNQTSLALIMLDVDHFKKYNDRYGHPQGDECLKEIS 409

Query: 160 DQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             L      T   V R GGEEF     G+    AA +A  +R  I+   +  +  P   +
Sbjct: 410 KILKTATARTGDLVARYGGEEFVILLPGTDRAGAAAVAERVRLAIQALNMEHAETPDGIV 469

Query: 219 TISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           T S GIA    +R    P   +++ ADQALY AK+ GRN+  C S
Sbjct: 470 TASLGIAALIPQRQQNSP-QQLVHAADQALYKAKEDGRNQ-SCIS 512


>gi|332188402|ref|ZP_08390126.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
 gi|332011548|gb|EGI53629.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
          Length = 339

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 92/196 (46%), Gaps = 23/196 (11%)

Query: 82  LGYISGSILKELFISYNRISQLS-----------------RIDCLSGLLNHSAFISSLGS 124
           L  ++G +L+ +  S  R+ Q +                 R D L+GL N  AF  S+G 
Sbjct: 142 LAKLTGEMLERIHDSERRLEQATAEADALREKLVEARASARRDPLTGLANRLAFNESIGQ 201

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                E   +   D+D FK+IND  GH VGD+V+  +  Q++   G    V R GGEEFA
Sbjct: 202 CFQSPESCYLALCDVDRFKRINDEHGHAVGDRVLNAIG-QILSEEGRGHLVCRHGGEEFA 260

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINI-SSGPSI-HITISAGIAERCHKEPISTIIYR 239
                 +  EA  L +  R  +   ++ +  +G +I  +T SAGI      +   T+  R
Sbjct: 261 ILMTKLTMTEARALIDRARDAVREKRLRVRETGEAIGEVTFSAGITAFRPDDTHETVFAR 320

Query: 240 ADQALYVAKKSGRNRV 255
           AD  LY AK  GRNR+
Sbjct: 321 ADALLYRAKNEGRNRI 336


>gi|296161321|ref|ZP_06844129.1| diguanylate cyclase [Burkholderia sp. Ch1-1]
 gi|295888479|gb|EFG68289.1| diguanylate cyclase [Burkholderia sp. Ch1-1]
          Length = 607

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 91/178 (51%), Gaps = 11/178 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L      +  L+  D L+GL N   F+  L           E L+++F D+D FKQIND 
Sbjct: 399 LHAKQRELVHLATHDVLTGLPNRVLFMEKLENAIEEAARRQECLAVLFVDLDRFKQINDQ 458

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIE 204
           FGH VGDKV+A ++ +L  V  +   V RLGG+EF     G   QEAA  +A+ +   + 
Sbjct: 459 FGHSVGDKVLAAVARRLKQVLCSADVVARLGGDEFIVLIEGPRSQEAAPAIASRIMATL- 517

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261
           N ++ I  G S+ +  S GI++       +  ++  AD A+Y AK  GR   + + D+
Sbjct: 518 NEEVRI-DGQSMTVGASIGISQFPDDSGTAEELLLNADAAMYAAKSGGRCAYLRYHDV 574


>gi|304395221|ref|ZP_07377105.1| diguanylate cyclase [Pantoea sp. aB]
 gi|304357474|gb|EFM21837.1| diguanylate cyclase [Pantoea sp. aB]
          Length = 402

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 10/154 (6%)

Query: 107 DCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N +AF +      +L S NE+ +++F D D FK INDN+GH  GD+V+  +  
Sbjct: 250 DPLTGLANRTAFSARLTQLLALQSANERFALLFLDGDRFKSINDNWGHAAGDEVLKAIGS 309

Query: 161 QLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +L+        V RLGG+EFA   ++    EQ   ++ N    I E  +I+I+ G  I  
Sbjct: 310 RLLSQASEQDLVARLGGDEFAMLVSSRTRDEQLQQLMQNIHDAISE--EISIAEGLPIKT 367

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           +++ G A     + + +I+ RAD  +Y  K+  +
Sbjct: 368 SMTIGYAWSQQGDTVESILERADMNMYKNKRKNK 401


>gi|302341745|ref|YP_003806274.1| periplasmic/7TM domain sensor diguanylate cyclase [Desulfarculus
           baarsii DSM 2075]
 gi|301638358|gb|ADK83680.1| periplasmic/7TM domain sensor diguanylate cyclase [Desulfarculus
           baarsii DSM 2075]
          Length = 576

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 8/164 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +LS+ D L+GL N   F   L             L ++  D+D FK  NDN GHP GD
Sbjct: 411 LGRLSQTDGLTGLFNKRHFDQELLAQVRRASESGAPLCLLMLDVDDFKAFNDNHGHPAGD 470

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  L++ +           R GGEEFA      S ++AA +   +R+         + 
Sbjct: 471 QVLQALAETIRASLRQADAAFRYGGEEFAVLLPDMSAEQAAAVGQRIRQTFACQSFLTAH 530

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G ++   +S G+A     E  ++++ RAD ALY AK+ G+NR+ 
Sbjct: 531 G-AVSCGVSLGLACLGQGEDAASLLRRADAALYQAKRQGKNRLA 573


>gi|86358136|ref|YP_470028.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86282238|gb|ABC91301.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 443

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 91/177 (51%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKL------SIVFFDIDYFKQIND 144
           E      ++   +  D L+GL N   F  +     NE L      S+   DID+FK++ND
Sbjct: 261 ETLAQMRQLRAAAACDYLTGLYNRRYFYDNGPKLVNECLRLKVPSSVAILDIDHFKRLND 320

Query: 145 NFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH +GDKV+  ++++L  +F G+   + RLGGEEFA          A  L +++R  I
Sbjct: 321 TYGHEIGDKVLKAVANRLFTIFEGSDNLLSRLGGEEFAILFPQMDSAAATKLCDEIRSDI 380

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              ++  +    + +TIS GIAE    E     +  ADQ LY+AK  GRN+V  +SD
Sbjct: 381 SRLKVT-ADDEDLGVTISIGIAEIGGYETFENYLNAADQFLYMAKHRGRNQV--YSD 434


>gi|59712868|ref|YP_205644.1| GGDEF domain-containing protein [Vibrio fischeri ES114]
 gi|59480969|gb|AAW86756.1| GGDEF domain protein [Vibrio fischeri ES114]
          Length = 631

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 94/193 (48%), Gaps = 23/193 (11%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---------EKLSI 131
           ++ YI  +  KEL      +  LS  D LSG  N   F   L +            +  +
Sbjct: 450 IISYIDITKRKEL---EKELRYLSEKDVLSGCWNRRKFEFELENQTLLTQRYYPAHQCCL 506

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              DID FK+IND  GH VGD+VI  +SD L        FV R+GGEEFA     ++  +
Sbjct: 507 AILDIDLFKRINDTKGHDVGDQVIRLVSDILNNGSRETDFVARIGGEEFAIIMPHTTLMD 566

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKS 250
           A ++ N LR       + +S     H+TIS G+ +  H +  +   Y+ AD ALY +K +
Sbjct: 567 AEMVVNRLR-------VAVSQLEEYHVTISGGLTDLGHSKKDA---YKCADLALYESKTN 616

Query: 251 GRNRVVCFSDIEN 263
           GRN+V   S +E+
Sbjct: 617 GRNQVSICSSLED 629


>gi|114046737|ref|YP_737287.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-7]
 gi|113888179|gb|ABI42230.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-7]
          Length = 878

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 10/174 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148
           S  +++ L+  D L+ L N    +  L          N +L+ VF D+D FK IND+FGH
Sbjct: 444 SEAQLAHLAYFDPLTHLPNRMKLMMQLKQELRHAKRLNAQLATVFIDVDLFKHINDSFGH 503

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQ 207
            +GD+++  L+ +L         + R+GG+EF A   G  S ++AA   N LR++ E   
Sbjct: 504 SIGDEMLVELAKRLRCRLQEQDVLSRIGGDEFVALISGIQSHEDAAAAINQLRQVFEQPF 563

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + +S+G  + +T S G++   +      T++  AD A+Y AK  GRN    +++
Sbjct: 564 V-VSTGDHLRLTASMGVSIYPNDGSNADTLLRNADAAMYRAKSEGRNNFAFYTE 616


>gi|330890981|gb|EGH23642.1| diguanylate cyclase [Pseudomonas syringae pv. mori str. 301020]
          Length = 686

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 85/161 (52%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIV--FFDIDYFKQINDNFGHPVGDKV 154
           Q + ID L+GL N +A+   L        +EK S++    D+D+FK+IND +GH  GDKV
Sbjct: 524 QKALIDPLTGLPNRAAWGERLEQEMSKWQHEKNSLLVCILDLDHFKRINDGYGHLAGDKV 583

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +++       +  F+ R GGEEF      +         ++LR  +E+   +   G 
Sbjct: 584 LKIVANVFRKRLRSDDFLARFGGEEFVMLLPATPPGTGLTQLDELRTAVESCPFHFK-GE 642

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT+S G+      E   T I RADQALY AK++GRNRV
Sbjct: 643 RVTITVSIGVTAFRTAERSDTAIKRADQALYKAKENGRNRV 683


>gi|218778804|ref|YP_002430122.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760188|gb|ACL02654.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 415

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 81/165 (49%), Gaps = 9/165 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
             +  LS  D L+GL N   F        +S      K+++   DIDYFK++ND  GH V
Sbjct: 250 QEVKDLSSKDFLTGLYNRRYFFDLGKKIHASALREKTKIAVATVDIDYFKRVNDTHGHDV 309

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VI  +S+ L         V R GGEEF       +  ++  L   +R+ I++S I +
Sbjct: 310 GDLVIQSVSNILANACRETDIVSRFGGEEFCILTPNITPADSLKLFERVRQTIQDSVIQV 369

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             G  I +T S G+     K  +  +I R+DQ LY AK  GRN+V
Sbjct: 370 -QGADIRVTASIGVCSTLLK-TLDDMIVRSDQMLYRAKNQGRNKV 412


>gi|148269917|ref|YP_001244377.1| response regulator receiver modulated diguanylate cyclase
           [Thermotoga petrophila RKU-1]
 gi|281412202|ref|YP_003346281.1| response regulator receiver modulated diguanylate cyclase
           [Thermotoga naphthophila RKU-10]
 gi|147735461|gb|ABQ46801.1| response regulator receiver modulated diguanylate cyclase
           [Thermotoga petrophila RKU-1]
 gi|281373305|gb|ADA66867.1| response regulator receiver modulated diguanylate cyclase
           [Thermotoga naphthophila RKU-10]
          Length = 450

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 8/158 (5%)

Query: 104 SRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           S  D L+GL N  A   F+  +    + +++   DID FK+IND FGHPVGD+V+  +++
Sbjct: 295 SETDGLTGLFNKRAIMRFLEEVLRSGKNIAVAMMDIDDFKKINDTFGHPVGDEVLRAVAN 354

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINISSGPSIHIT 219
            L     +   VGR GGEEF      + E++A +   N + + I N       G    +T
Sbjct: 355 ILRETVKSGK-VGRYGGEEF-MVVFETGERDAVVKTMNSIMENIRNFDWQKIFGSEKKVT 412

Query: 220 ISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +S G+A  +    P+  +I  AD+ LY AK+SG++R V
Sbjct: 413 LSGGVAFSKKESSPVE-LIEEADKKLYTAKRSGKDRYV 449


>gi|170724556|ref|YP_001758582.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169809903|gb|ACA84487.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
          Length = 398

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 20/168 (11%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+GL +  A  + + S   K ++   DID+FK+ ND +GH VGD+V+  ++ ++  V 
Sbjct: 230 DELTGLASRRALYNLVLSLGRKYTVAMLDIDHFKKFNDTYGHDVGDQVLKLVASKIAEVT 289

Query: 167 GTPMFVGRLGGEEFA---------------AAALGSSEQEAAILANDLRKIIENSQINIS 211
           G      R GGEEF                       E+   +L ++ RK    ++ N +
Sbjct: 290 GGGK-AFRYGGEEFTIVFSRKDLSSVLPHLEKVRKEIEKYDIVLRDEKRKKQTKAKRNKA 348

Query: 212 ----SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               S   +++TIS G+A+  H+E     +  AD+ALY AKK GRN++
Sbjct: 349 QERNSKRVVNVTISIGVADHQHRESFEQTMKEADKALYRAKKKGRNQL 396


>gi|163851915|ref|YP_001639958.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163663520|gb|ABY30887.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 474

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 93/186 (50%), Gaps = 10/186 (5%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE---KLSI 131
           ++LL  + G  L+        +++L++ D L+GL N     + F  + G+       L++
Sbjct: 286 TVLLSLLFGRELRRSAAMQAELARLAQTDVLTGLPNRRHFETVFAQAWGTSRRTGAPLAL 345

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQ 190
           +  D D+FK+ ND +GH VGD V+  L+D L      P   V R+GGEEFA    G+   
Sbjct: 346 ILIDADHFKRYNDRYGHAVGDAVLRGLADSLSASVRRPGDLVARVGGEEFAVLLPGTDHD 405

Query: 191 EAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            A  ++  + + I   +  ++  GP   +T+S G+A       +  +  RAD ALY AK 
Sbjct: 406 GAMRVSETIHQAIAGFAMPSVGIGPGT-VTVSLGLAVDSGGGTVEDLYRRADAALYEAKA 464

Query: 250 SGRNRV 255
            GRN+ 
Sbjct: 465 GGRNQT 470


>gi|119486060|ref|ZP_01620122.1| hypothetical protein L8106_06050 [Lyngbya sp. PCC 8106]
 gi|119456835|gb|EAW37963.1| hypothetical protein L8106_06050 [Lyngbya sp. PCC 8106]
          Length = 569

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 86/175 (49%), Gaps = 21/175 (12%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  LS  D L+GL N   F          LG  N  LS++  DIDYFK  ND +GHP GD
Sbjct: 388 LKSLSETDELTGLANRRWFNNMIEQEWQRLGHQNNSLSLLLVDIDYFKVYNDLYGHPAGD 447

Query: 153 KVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
             +  ++  L   V  +   V R GGEEFA     S+ Q    +A  ++K I+  QI + 
Sbjct: 448 VCLQKIAQALTECVNRSTDLVSRYGGEEFAILLPMSNNQGGVQVAQRIQKQIKALQITVK 507

Query: 212 SG-----PSIHITISAGIAERCHKEPISTIIYR-----ADQALYVAKKSGRNRVV 256
           +      P   +T+S G+A      P S   +R     AD++LY +K++GRNR+ 
Sbjct: 508 NSQIICFPEDVVTVSIGVASII---PSSDFNWRDLVEAADRSLYESKRTGRNRIT 559


>gi|116333211|ref|YP_794738.1| Signal transduction diguanylate cyclase [Lactobacillus brevis ATCC
           367]
 gi|116098558|gb|ABJ63707.1| Signal transduction diguanylate cyclase [Lactobacillus brevis ATCC
           367]
          Length = 326

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 91/169 (53%), Gaps = 12/169 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R++  +  D L+ + N+ AF +          + ++ L+++ FDID+FKQ+ND +GH  G
Sbjct: 157 RLTYTTNFDELTHVNNYFAFKNDFEEQFAHSRTTDQPLTLMLFDIDHFKQVNDTYGHLAG 216

Query: 152 DKVIAFLSDQLVVVFG---TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           D V++  +  +    G     + + R GGEEF     G + ++AA L + + + +  +  
Sbjct: 217 DYVLSHTAQLVTKQLGELDDTLHLYRTGGEEFTILFTGYTTEQAAPLVHSIAQRVREAHF 276

Query: 209 NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +   G  I I+ISAG+ +     +    I +RAD+ LY +K++GR+RV 
Sbjct: 277 S-HDGHQISISISAGVTQLHTDDDQRVDIFHRADRNLYHSKQTGRDRVT 324


>gi|120554700|ref|YP_959051.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120324549|gb|ABM18864.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 629

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 8/177 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           + ++EL  +  +++ +S  D L+GL N     + L             LS+   D D+FK
Sbjct: 436 NTMRELEQANRKLASISLNDALTGLYNRRHMDNLLPELCREARRTGNPLSLALIDADHFK 495

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDL 199
           +IND +GH  GD+ +  ++  L      P  V  R GGEEFA    G+    A  L   +
Sbjct: 496 RINDTWGHDFGDQCLKQIAGILDEHVKRPRDVAIRFGGEEFALLLPGTDLDGARTLCLAI 555

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            K +  + +      + H+T+SAGIAE    +  S +  +AD+ALY AK +GR+++V
Sbjct: 556 LKAMRKTPLIAPGNETFHLTLSAGIAELATGQEPSDLFRKADEALYQAKGAGRDQIV 612


>gi|264676521|ref|YP_003276427.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262207033|gb|ACY31131.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 473

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 6/134 (4%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            +  +I+  D+D+FKQIND+FGH  GD+++   S  L  V      VGR+GGEEFA A  
Sbjct: 337 GQPFAILMLDLDHFKQINDSFGHAGGDQLLRSFSQTLSQVLRAQDIVGRMGGEEFAVALP 396

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE----RCHKEPISTIIYRAD 241
                 A  +A  + + I   ++ ++   ++  T+S G+      + H+  +  ++ +AD
Sbjct: 397 KVDASAAQEIAKRINRAIRELRVPMNDK-TMSATVSIGLVHTTSLQAHQS-LDMLLLQAD 454

Query: 242 QALYVAKKSGRNRV 255
           QALY AK +GRNRV
Sbjct: 455 QALYEAKAAGRNRV 468


>gi|229019255|ref|ZP_04176083.1| Sensory box/GGDEF family protein [Bacillus cereus AH1273]
 gi|229025500|ref|ZP_04181910.1| Sensory box/GGDEF family protein [Bacillus cereus AH1272]
 gi|228735782|gb|EEL86367.1| Sensory box/GGDEF family protein [Bacillus cereus AH1272]
 gi|228742038|gb|EEL92210.1| Sensory box/GGDEF family protein [Bacillus cereus AH1273]
          Length = 430

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 84/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ ID L+ + N   F   L +        +EK++++ FDID FK +ND +GH 
Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILETEWENVIRNDEKIALILFDIDNFKSVNDTYGHD 320

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L+D +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 321 FGDLALVQLADLMKSKVEHQHIFARWGGEEFIILVTDTVEKEAFQVAESLRFFIETKQF- 379

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             SG S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 380 --SGIS-KLTASFGVALYEQGITKEELMQRADIALYEAKKNGKNQVCIY 425


>gi|311280752|ref|YP_003942983.1| diguanylate cyclase [Enterobacter cloacae SCF1]
 gi|308749947|gb|ADO49699.1| diguanylate cyclase [Enterobacter cloacae SCF1]
          Length = 565

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 83/175 (47%), Gaps = 7/175 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFK 140
           G  L+E       + + S  D L+ L N  AF +   +  ++ S      ++  D+D FK
Sbjct: 388 GDKLQEQTRLSRTLKRQSEEDPLTHLYNRRAFDARATALLQQASHHFPAWLIMLDVDRFK 447

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GHP GD+V+  L+  L         +GRLGGEEFA        +  A     ++
Sbjct: 448 SINDTWGHPTGDEVLVGLATTLKTFSRPGDVIGRLGGEEFAVMFRAQGHESVAGYTQRIQ 507

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             I        +G    IT S G++    + P+S ++  AD ALY AK SGR+R+
Sbjct: 508 AEIRKLAFQGPNGEPFQITASFGVSVGWQR-PLSELMSEADAALYEAKNSGRDRI 561


>gi|297569300|ref|YP_003690644.1| response regulator receiver modulated diguanylate cyclase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925215|gb|ADH86025.1| response regulator receiver modulated diguanylate cyclase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 337

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 19/172 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+++LS  D L+GL N   F  ++ +           L++V  DID FKQ NDNFGH VG
Sbjct: 159 RLNELSLTDALTGLANRRCFQETIHTEWRRAMRNRHPLTLVLGDIDSFKQFNDNFGHLVG 218

Query: 152 DKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           D+ +     ++  V  +P+        R GGEEF      +  +    LA  +R+ +E  
Sbjct: 219 DECLV----RIAAVIRSPLMRPSDLAARFGGEEFVILLPETDLEGGRHLAETVRQEVEKM 274

Query: 207 QI-NISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255
            + +  SG  + +T+S G++    +   S   +I  AD+ALYVAK+ GRNRV
Sbjct: 275 SVEHPESGTRLQLTMSFGVSSVVPQPEFSEQDLICAADKALYVAKEGGRNRV 326


>gi|146308555|ref|YP_001189020.1| diguanylate cyclase [Pseudomonas mendocina ymp]
 gi|145576756|gb|ABP86288.1| diguanylate cyclase [Pseudomonas mendocina ymp]
          Length = 365

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 95/200 (47%), Gaps = 21/200 (10%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------IS 120
           +L  ++ S +  LL  ++     K +F+  +R++  + +D L+GL N S         I+
Sbjct: 172 HLIWILASFSFGLLSAFLLERAHKRMFLHQDRLALSASLDGLTGLWNRSRMERFLVEEIA 231

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI----AFLSDQLVVVFGTPMFVGRLG 176
               Y    S+V  DID+FK +ND  GH VGD V+      L D + V+      VGRLG
Sbjct: 232 RANRYGTPFSVVLIDIDHFKSVNDTHGHAVGDSVLRQFATLLRDSVRVLDK----VGRLG 287

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPIST 235
           GEEF          E               +IN  +   +   T S GIAE    E + +
Sbjct: 288 GEEFLIVL-----PENDAAQAKQAVQALQQRINGFAFDRVQRKTASFGIAEYRPGESLDS 342

Query: 236 IIYRADQALYVAKKSGRNRV 255
           ++ RADQA+Y AK SGR+R+
Sbjct: 343 LLERADQAMYRAKASGRDRI 362


>gi|104783790|ref|YP_610288.1| diguanylate cyclase [Pseudomonas entomophila L48]
 gi|95112777|emb|CAK17505.1| putative diguanylate cyclase (GGDEF domain)/response regulator
           [Pseudomonas entomophila L48]
          Length = 538

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 84/158 (53%), Gaps = 10/158 (6%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +  L           + LS    DID+FK+IND  GHP+GD+VI  L+
Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRARREEQPLSFAMLDIDHFKKINDRHGHPMGDRVIKSLA 438

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218
             L        ++GR GGEEFA     ++ + A  + +++R+    ++I+  + P  +  
Sbjct: 439 LFLKQRLRKTDYIGRYGGEEFAIVMPNTALEAAHKVLDEIRRRF--AEIHYPAQPHDLQC 496

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T SAG+ +        T+   AD+ALY AK +GRN VV
Sbjct: 497 TFSAGVVQLDDNLDALTMASAADEALYRAKHAGRNCVV 534


>gi|320335163|ref|YP_004171874.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Deinococcus maricopensis DSM 21211]
 gi|319756452|gb|ADV68209.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Deinococcus maricopensis DSM 21211]
          Length = 899

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 2/153 (1%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           +  D L+GL N   F + L +      ++  D D+FK++ND FGH VGD+V+  ++  L+
Sbjct: 196 AHTDALTGLNNRRLFTAHLEALRPGDHLILVDADHFKRVNDVFGHDVGDEVLQGIAQALI 255

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                     RLGGEEFA    G S  +A  +A          ++   +G ++ +T S G
Sbjct: 256 TSAPPGTRAYRLGGEEFALIVPGRSGAQALKVAQACWAAARTPRVQ--AGQTLRVTCSVG 313

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +A+    E  +    RAD ALY AK +GR++VV
Sbjct: 314 VADVLPGEAPAATYKRADAALYAAKTAGRDQVV 346


>gi|297545361|ref|YP_003677663.1| GAF sensor-containing diguanylate cyclase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296843136|gb|ADH61652.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 554

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 10/172 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y  +++ S  D L+   N   F  +L          +E +S++ FD+D FK IND +GH 
Sbjct: 383 YYEVTKKSITDPLTKTYNRRYFNDALMENIMRADENSEPVSLIMFDLDNFKLINDTYGHL 442

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD+V+  ++ ++     +   V R GGEEFA      + ++A  +A  +R  + +  + 
Sbjct: 443 IGDEVLKEVAKRIKNNVRSDDIVARFGGEEFAVILPKLTAEQAYTIAERIRSEVSSKPVK 502

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS-GRNRVVCFS 259
              G  IHITI+ G+A+   K +    +I  AD+ALY   KS GRN++  + 
Sbjct: 503 TEKG-DIHITITGGVADYPRKADSAEKLISHADRALYAGGKSKGRNKIAIYE 553


>gi|221369518|ref|YP_002520614.1| Diguanylate cyclase with GAF sensor [Rhodobacter sphaeroides KD131]
 gi|221162570|gb|ACM03541.1| Diguanylate cyclase with GAF sensor [Rhodobacter sphaeroides KD131]
          Length = 326

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 86/163 (52%), Gaps = 9/163 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q++  D L+G +    +++++            + +IV FD+D+FK IND  GH VGD
Sbjct: 161 LRQIALSDALTGAMTRRGWLAAVEKEMARGARQGTQAAIVLFDVDHFKTINDTHGHAVGD 220

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  L+ + ++  G    +GR+GGEEFA     +   EA  LA  LR+   ++ I + +
Sbjct: 221 AVLQALTRRCLLHLGPADALGRIGGEEFAVLVPDAGLPEAMELAERLRRSFSDAPIEV-A 279

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254
           G ++ +T S G+           + +  AD+ LY AK +GRNR
Sbjct: 280 GQALRVTASFGVQGLDADTGNAGSWLAAADRRLYEAKAAGRNR 322


>gi|172087714|ref|YP_204898.2| GGDEF domain-containing protein [Vibrio fischeri ES114]
 gi|171902306|gb|AAW86010.2| GGDEF domain protein [Vibrio fischeri ES114]
          Length = 482

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 98/191 (51%), Gaps = 12/191 (6%)

Query: 76  ITISLLLGYISGSILKE-------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125
           +TIS+L+  ++  + ++       L I    +  ++  D L+GLLN  A    +  Y   
Sbjct: 291 LTISMLIAALTSVVTRDKQRIENLLEIRTKELRYMAMHDDLTGLLNRRAIRDVITRYIEA 350

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            +  +++ FDID FKQIND +GHP GD+V+  +   +    G  + V RLGG+EF+    
Sbjct: 351 EKPFALLCFDIDKFKQINDTYGHPEGDEVLRHIGHLMSETLGNNVHVSRLGGDEFSIVLK 410

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            ++  E  +++  +  ++  S   + +   I  TIS G A     E +  ++  ADQALY
Sbjct: 411 LNNIDELTLISEQIHDLVATSP-TVFNDFEIAQTISLG-AVLWQGETLEELLKAADQALY 468

Query: 246 VAKKSGRNRVV 256
            +K  GRN+V 
Sbjct: 469 QSKTMGRNQVT 479


>gi|167576912|ref|ZP_02369786.1| GGDEF domain protein [Burkholderia thailandensis TXDOH]
          Length = 487

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 91/188 (48%), Gaps = 19/188 (10%)

Query: 85  ISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIV 132
           + G+ L    + + R     + +L+R D L+GL N  AF  +L S           LS++
Sbjct: 296 VGGTALLSRELRWRRHAELHLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLL 355

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQE 191
           F DID FK  ND++GH  GD V+  +   L + V      V R GGEEF         + 
Sbjct: 356 FVDIDQFKAYNDHYGHQAGDDVLREVGRCLALNVRRAADDVSRYGGEEFVITLPDIDAKS 415

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVA 247
           AA +A  +R+ + +  I     P   +T+S G+        H +  +T++  AD ALY A
Sbjct: 416 AAAIAEHIRRAVYDLDIEHVRSPYARVTVSIGLVTSHEHAAHSD--TTLVKMADAALYQA 473

Query: 248 KKSGRNRV 255
           K +GRNRV
Sbjct: 474 KSTGRNRV 481


>gi|115372346|ref|ZP_01459655.1| ggdef family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115370559|gb|EAU69485.1| ggdef family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 237

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 81/159 (50%), Gaps = 11/159 (6%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N   F+  L         Y+  LS++ FDID+FK+IND  GH  GD V+  L+
Sbjct: 80  DGLTGVSNKRYFLEYLEREMGRSHRYHRALSLMIFDIDHFKKINDVHGHLAGDHVLRELA 139

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +  +        R GGEEFA        ++A + A  +RK+IE           I +T
Sbjct: 140 QSVKRLVRREQCFARYGGEEFALVMPEDGPEKARLFAEKIRKLIEERTFMFED-KEIPVT 198

Query: 220 ISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVV 256
           IS G+A+      EP +  I  +D  LY AKK+GRNRVV
Sbjct: 199 ISIGVADMTADMTEP-TQFIKVSDANLYRAKKAGRNRVV 236


>gi|74318230|ref|YP_315970.1| diguanylate cyclase [Thiobacillus denitrificans ATCC 25259]
 gi|74057725|gb|AAZ98165.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 501

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 100/184 (54%), Gaps = 12/184 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS----SLG--SYNEKLSIVFFDIDYFKQINDN 145
           +L     ++  LS  D L+GL N  AF +    +LG      ++++V  DIDYFK+IND+
Sbjct: 320 QLQAQREQLEHLSLTDPLTGLPNRRAFETRFPQALGFAGRGLRIALVLLDIDYFKRINDS 379

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH VGD+V+  L+  L  +        RL G+EF    +  ++ + A +A   R++ ++
Sbjct: 380 FGHGVGDQVLLALAQTLKALTRRADLPARLAGDEF---VILLADLDTAGVALWYRRLADH 436

Query: 206 SQINISS-GPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            +  +++ G  I   ISAG     R  ++ ++  + RAD+ALY AK SGRN++V  + ++
Sbjct: 437 FRSELAALGLDIQTGISAGQTWLRRTSRDTMNDALGRADRALYQAKASGRNQIVIDAPLD 496

Query: 263 NNTC 266
               
Sbjct: 497 ETGA 500


>gi|26988822|ref|NP_744247.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida KT2440]
 gi|24983624|gb|AAN67711.1|AE016402_3 sensory box protein [Pseudomonas putida KT2440]
          Length = 800

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 55/160 (34%), Positives = 81/160 (50%), Gaps = 11/160 (6%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+G+ N   F   L    E+       L+++  DID+FK+IND FGH VGD+V+
Sbjct: 640 LSVTDSLTGIHNRRYFQERLKIELERAQRDGLPLAVIMLDIDHFKRINDRFGHAVGDRVL 699

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L  ++           RLGGEEF     GS   +A +LA +L + + N  +       
Sbjct: 700 RSLCQRIAQRLRRTDVFCRLGGEEFMVLCPGSDANQARLLALELWQGVRNVPVEGVG--- 756

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +T S G+A     E    ++ RAD  +Y AK++GR+RV
Sbjct: 757 -QVTASFGVAGWRSGEGADALLLRADAGVYAAKQAGRDRV 795


>gi|323489040|ref|ZP_08094276.1| diguanylate cyclase with PAS/PAC sensor [Planococcus donghaensis
           MPA1U2]
 gi|323397265|gb|EGA90075.1| diguanylate cyclase with PAS/PAC sensor [Planococcus donghaensis
           MPA1U2]
          Length = 197

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 93/184 (50%), Gaps = 13/184 (7%)

Query: 85  ISGSILKELFISYNRISQL-----SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132
           + G +++ + I+  ++++L     +  D L+ L N   F       + S    N  +S++
Sbjct: 13  VEGVVIRHVDITQQKLTELQLKEHAEKDSLTSLFNRRYFQEQLKKEVRSAHQKNTPISLL 72

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           + D D FK+IND +GHP GD+V+  L+ Q+           R+GG+EFA     +++ + 
Sbjct: 73  YIDTDNFKEINDTYGHPTGDQVLKQLAMQITKFTRPSDTTARIGGDEFAVILPNTNKADL 132

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            ++A  L + I+N  I       I +T+S G     +   ++ +I   D ALY AK  G+
Sbjct: 133 ELIATRLSQEIQNLNIQ-EQNRQIDVTVSIGGKSFTNNSSLNCMIEWVDDALYAAKDKGK 191

Query: 253 NRVV 256
           N+VV
Sbjct: 192 NQVV 195


>gi|289579196|ref|YP_003477823.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter italicus
           Ab9]
 gi|289528909|gb|ADD03261.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter italicus
           Ab9]
          Length = 554

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 10/172 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y  +++ S  D L+   N   F  +L          +E +S++ FD+D FK IND +GH 
Sbjct: 383 YYEVTKKSITDPLTKTYNRRYFNDALMENIMRADENSEPVSLIMFDLDNFKLINDTYGHL 442

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD+V+  ++ ++     +   V R GGEEFA      + ++A  +A  +R  + +  + 
Sbjct: 443 IGDEVLKEVAKRIKNNVRSDDIVARFGGEEFAVILPKLTAEQAYTIAERIRSEVSSKPVK 502

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS-GRNRVVCFS 259
              G  IHITI+ G+A+   K +    +I  AD+ALY   KS GRN++  + 
Sbjct: 503 TEKG-DIHITITGGVADYPRKADSAEKLISHADRALYAGGKSKGRNKIAIYE 553


>gi|218463678|ref|ZP_03503769.1| two-component response regulator protein [Rhizobium etli Kim 5]
          Length = 415

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 87/162 (53%), Gaps = 11/162 (6%)

Query: 107 DCLSGLLNHSAFISSLGSY-NEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F  +     NE L      S+   DID+FK++ND +GH +GDKV+  ++
Sbjct: 248 DYLTGLYNRRYFYDNGPKLVNECLRLKVPSSVAILDIDHFKRLNDTYGHEIGDKVLKAVA 307

Query: 160 DQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           ++L  +F G+   + RLGGEEFA          A  L +++R  I   ++  +    + +
Sbjct: 308 NRLFTIFEGSDNLLSRLGGEEFAILFPQMDSAAATKLCDEIRSDISRLKVT-ADDEDLGV 366

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           TIS GIAE    E     +  ADQ LY+AK  GRN+V  +SD
Sbjct: 367 TISIGIAEIGGYETFENYLNAADQFLYMAKHRGRNQV--YSD 406


>gi|190892205|ref|YP_001978747.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190697484|gb|ACE91569.1| probable two-component response regulator protein [Rhizobium etli
           CIAT 652]
          Length = 443

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 91/177 (51%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKL------SIVFFDIDYFKQIND 144
           E      ++   +  D L+GL N   F  +     NE L      S+   DID+FK++ND
Sbjct: 261 ETLAQMRQLRAAAACDYLTGLYNRRYFYDNGPKLVNECLRLKVPSSVAILDIDHFKRLND 320

Query: 145 NFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH +GDKV+  ++++L  +F G+   + RLGGEEFA          A  L +++R  I
Sbjct: 321 TYGHEIGDKVLKAVANRLFTIFEGSDNLLSRLGGEEFAILFPQMDSAAATKLCDEIRSDI 380

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              ++  +    + +TIS GIAE    E     +  ADQ LY+AK  GRN+V  +SD
Sbjct: 381 SRLKVT-ADDEELGVTISIGIAEIGGYETFENYLNAADQFLYMAKHRGRNQV--YSD 434


>gi|170728486|ref|YP_001762512.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169813833|gb|ACA88417.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
          Length = 366

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 119/254 (46%), Gaps = 31/254 (12%)

Query: 25  HTFMIYFSIFFSIFI-------ATVIFIANIFLFYI-------GLTPFYGLEYILVENLS 70
           H + + F+I  + F        + ++FI N+ L++         L   Y L+   +  L 
Sbjct: 113 HYYFLLFAIIPAAFFEISQWRSSAILFITNLSLYFFFQLNGWEALPEIYELQAQQLNLLR 172

Query: 71  LVIIS---ITISLLLGYISGSILKELFISYNRI--SQLSRIDCLSGLLNHSAFISSL--- 122
           ++++     TI LLL      ++ E +   N I   +L+  D L+ L N   FI ++   
Sbjct: 173 VIMVGSSVFTIILLL------LISERYSERNEIFLEKLANTDPLTSLNNRRHFIDNVQQQ 226

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                ++ L++   DID+FKQIND  GH  GD+ +  +S  L    G    + R+GGEEF
Sbjct: 227 LAKKLDQNLALAIIDIDHFKQINDTGGHDAGDEALKHISQILSKHVGEKELLARIGGEEF 286

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
           A   + S+ + A    + L +  EN+           IT S G+     ++ +  ++  A
Sbjct: 287 AILYIESTAELATKKGDALLRQFENTPFYYFE-KEYKITASIGLCLFTGQQDLDQVMREA 345

Query: 241 DQALYVAKKSGRNR 254
           D+ALY AK+ GRNR
Sbjct: 346 DEALYQAKEGGRNR 359


>gi|186470385|ref|YP_001861703.1| diguanylate cyclase [Burkholderia phymatum STM815]
 gi|184196694|gb|ACC74657.1| diguanylate cyclase [Burkholderia phymatum STM815]
          Length = 241

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 4/167 (2%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGH 148
           +E+     +++  +  D L+G+ N SA I        ++   ++  DID FK++ND+FGH
Sbjct: 72  REMQALAQQLAHRATHDALTGVFNRSAVIERTTKVLRHDSAVMIILDIDEFKRVNDDFGH 131

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           P GD VI  + + L  + G   F+GR+GGEEF          EA   A  +R+ I   + 
Sbjct: 132 PAGDAVIMGIVECLRRIVGERGFIGRVGGEEFTVLLPAHEPAEALRQAEKMREAI--GRH 189

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +S     +T S G++         T    AD ALY AK+ GRNRV
Sbjct: 190 VFASPVDRRVTASFGVSANPPGTDFDTAYGFADAALYRAKRGGRNRV 236


>gi|326387022|ref|ZP_08208632.1| two component response regulator [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326208203|gb|EGD59010.1| two component response regulator [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 440

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 15/187 (8%)

Query: 84  YISGSILKELFISYNRISQLSRI------DCLSGLLNHSAF-------ISSLGSYNEKLS 130
           YI+  +L  +  + + I Q+ R+      D L+GL N  AF       +  L + N   S
Sbjct: 247 YIAEEVLCRVENNIDTIKQMKRLRHLAERDPLTGLYNRRAFFERAYKILDGLKAGNAPGS 306

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSE 189
           +   DID+FK +ND +GH  GD  +  +++ L+       F+  RLGGEEF         
Sbjct: 307 LAILDIDHFKTVNDTYGHDCGDVALNAVANVLLTTAQERGFLTARLGGEEFVMMFHHRDS 366

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            +   L  D+R+ IE   +     P I +T S G++    +E +  ++  ADQ LY+AK 
Sbjct: 367 TQVFALCEDIRQAIEACDVRSEEAP-IALTASIGVSVIHLEEGMDNLLNAADQMLYLAKL 425

Query: 250 SGRNRVV 256
            GRNRV+
Sbjct: 426 QGRNRVI 432


>gi|323204003|gb|EFZ89020.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
          Length = 365

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 25/203 (12%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
            LSL++I +   LL  ++S     +L     R+  +S  D ++G+ N   +   L +   
Sbjct: 169 TLSLLVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 227

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               ++ + +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EF
Sbjct: 228 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 287

Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237
           A    G+   ++AI A  + ++ E  + + +   P + + IS G+A      P++  I  
Sbjct: 288 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 338

Query: 238 YR-----ADQALYVAKKSGRNRV 255
           YR     AD ALY AK +GRNR 
Sbjct: 339 YREWLKSADMALYKAKNAGRNRT 361


>gi|293394471|ref|ZP_06638767.1| ornithine decarboxylase [Serratia odorifera DSM 4582]
 gi|291422936|gb|EFE96169.1| ornithine decarboxylase [Serratia odorifera DSM 4582]
          Length = 403

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 122/252 (48%), Gaps = 26/252 (10%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN-LSLV-IISITISLL 81
           P T  + FS     +++ ++    +FLF + +      E I++    SLV + S  + L+
Sbjct: 149 PLTVALMFSSLIPFYLSPML----LFLFSVPILSMVIGENIVIRGAFSLVNLASYALILI 204

Query: 82  LGYISGSILKELFISY-----------NRISQLSRIDCLSGLLNHSAF-------ISSLG 123
           L Y +  +L++ F+              R+S+L+  D L+GL N   F        +   
Sbjct: 205 LIYSAKRMLEKWFMLAMERERENQRLIERLSKLAHRDPLTGLSNRRYFNAYFDSVFARES 264

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ-LVVVFGTPMFVGRLGGEEFAA 182
           S  E  S++  D+DYFK+ ND++GH  GD+ +  L++  L  V  +   V R GGEEF  
Sbjct: 265 SGVEHFSVILIDVDYFKKYNDHYGHQAGDECLVRLAECFLRCVRRSQDLVARYGGEEFII 324

Query: 183 AALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
               S  +EA  +A  ++  +   QI +  SG S  +++S GIA+         +I  AD
Sbjct: 325 LLPKSDRREAMAVAERIKTQVAALQIPHAQSGVSPWVSVSQGIAQWRPGVDKERLIASAD 384

Query: 242 QALYVAKKSGRN 253
           +ALY AK  GR+
Sbjct: 385 RALYQAKSQGRS 396


>gi|26989136|ref|NP_744561.1| diguanylate cyclase [Pseudomonas putida KT2440]
 gi|24983971|gb|AAN68025.1|AE016435_2 GGDEF family protein [Pseudomonas putida KT2440]
          Length = 544

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 14/175 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIND 144
           ++L+E     NR +Q    D L+GL N  +    +S L +   + + +  DID+FK+IND
Sbjct: 376 NLLQERIGRLNRDAQ---TDPLTGLGNRRSLEISLSLLEAEKREFAAIALDIDHFKRIND 432

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH VGD+V+  L++ +         + R GGEEF     G++   AA +A  LR  ++
Sbjct: 433 SHGHDVGDQVLRQLAELMRRCCREGDLLCRTGGEEFLILLPGATLNVAAAVAERLRVTVQ 492

Query: 205 NSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              +  S G    +TIS G+       H EP+S  +  AD+ALY AK+ GRNRV 
Sbjct: 493 EMPVE-SVGA---VTISLGVTHWDGETHGEPMSA-LGEADRALYRAKQEGRNRVA 542


>gi|330953521|gb|EGH53781.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 308

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 73/135 (54%), Gaps = 1/135 (0%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           + + LS++  DID+FK++ND +GH  GD V+  ++  L         V R GGEEF    
Sbjct: 175 HKQPLSLLMLDIDHFKKVNDEYGHHTGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVIL 234

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +  + A ++   L + + N +    S P++ +T+S G +     E   +++ RAD AL
Sbjct: 235 SNTGAESAELIGQRLCQAVRNLEFRELS-PALTMTVSLGCSTLLPTETADSLLRRADNAL 293

Query: 245 YVAKKSGRNRVVCFS 259
           YVAK+ GRNR+   S
Sbjct: 294 YVAKREGRNRIAMAS 308


>gi|311279563|ref|YP_003941794.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae SCF1]
 gi|308748758|gb|ADO48510.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae SCF1]
          Length = 720

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 106/203 (52%), Gaps = 12/203 (5%)

Query: 73  IISITISLLLGYI--SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125
           I+++   L+L +I  S   L +L     +  +++  D LS L N  A I  L        
Sbjct: 267 IVALAAGLILFFIVLSSLGLYKLARGEKQAREIALTDWLSHLPNRRALIEQLERVRKHGD 326

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           +E  ++VF D+D FK +ND +GH VGD +I  ++  L  +      + R+GG+EFA    
Sbjct: 327 DELKTVVFIDLDGFKDVNDIYGHDVGDALIVHIAHTLHALVPDDGMLARMGGDEFAMTLG 386

Query: 186 GS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQA 243
           G+ SEQ AA  A  +   + NS + I  G +IHI+ S GIA    +E   S +  RAD A
Sbjct: 387 GALSEQHAAAFAGSVLDFL-NSPLRI-RGRTIHISASIGIASGILRECTTSELFRRADIA 444

Query: 244 LYVAKKSGRNRVVCFSDIENNTC 266
           +Y +K +G+ R+  + D E N+ 
Sbjct: 445 MYHSKITGKGRITHY-DAELNSA 466


>gi|260887989|ref|ZP_05899252.1| GGDEF domain protein [Selenomonas sputigena ATCC 35185]
 gi|330838531|ref|YP_004413111.1| diguanylate cyclase [Selenomonas sputigena ATCC 35185]
 gi|260862240|gb|EEX76740.1| GGDEF domain protein [Selenomonas sputigena ATCC 35185]
 gi|329746295|gb|AEB99651.1| diguanylate cyclase [Selenomonas sputigena ATCC 35185]
          Length = 648

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 104/219 (47%), Gaps = 14/219 (6%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQL 103
           F  ++F +   +TPF  L +++      V+ +I + +     S ++ K L        + 
Sbjct: 387 FQYHLFAWDTYITPFALLSFVV-----FVLSTIRMRIRDEVRSEAVQKSLENEIVEAKEK 441

Query: 104 SRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           ++ID L+   N   F  +   +       +  L+ +  DID+FK++ND++GH  GD V++
Sbjct: 442 AQIDPLTRCFNRYKFNDTFPEWVKVAQNTDGHLAFMILDIDFFKRVNDDYGHDEGDHVLS 501

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             +  L         + R GGEEF    L  S +EA I AN LR+ I  +Q  I +   I
Sbjct: 502 SFAGILHTSLDRRHLLVRWGGEEFVILCLHYSLKEAEIFANHLRERI--AQAPICNYRPI 559

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +I         K+ +  ++ RAD ALY AK+ GRN V
Sbjct: 560 QCSIGVSRWHGVQKDTVEALLKRADDALYRAKQEGRNCV 598


>gi|115377475|ref|ZP_01464677.1| ggdef domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365519|gb|EAU64552.1| ggdef domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 312

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 11/171 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + QLS +D L+ L NH  F   L         Y++ L ++  D+D+FK+IND  GHPVGD
Sbjct: 127 LQQLSVLDGLTQLHNHRYFQERLREEFRCAQRYDDALCLILLDLDFFKEINDRHGHPVGD 186

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L         V R GGEEFA     +    A  +A  + K +    +    
Sbjct: 187 TVLCEVARILQQSVRETDIVARYGGEEFAVLLPRTHLAGAITVAERVWKGVAGQPMGADG 246

Query: 213 GPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDI 261
             ++ IT S G++   H+  ++   ++  AD+ALY AK+ GRNRV   S I
Sbjct: 247 --ALRITASLGVSGFPHRTVLTPEQLLLTADEALYRAKREGRNRVCLHSPI 295


>gi|89092170|ref|ZP_01165125.1| Signaling protein with a sensor domain, CHASE, GGDEF and EAL
           domains [Oceanospirillum sp. MED92]
 gi|89083905|gb|EAR63122.1| Signaling protein with a sensor domain, CHASE, GGDEF and EAL
           domains [Oceanospirillum sp. MED92]
          Length = 731

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 103/200 (51%), Gaps = 14/200 (7%)

Query: 73  IISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS----- 124
           +++  +SL  G   Y+  +  +E   +    +  +  D L+GL N   F   L S     
Sbjct: 272 LVAFLVSLATGMAAYLIATNYREKLQAIETATYRANYDVLTGLSNRYHFSQQLQSLIYEH 331

Query: 125 --YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
             +    ++ F D+DYFK++NDN+GHP GD+++   + ++V +  +   + RL G+EF  
Sbjct: 332 QRHGHMFALFFIDLDYFKEVNDNWGHPAGDELLRLFAHRMVSIVRSDDLIARLAGDEFVI 391

Query: 183 AALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRA 240
                 S  +A +LA  L+  +E  +  + +G  + +T S GIA        +  ++  A
Sbjct: 392 VLKDLESATQAELLAEKLQ--LELGEPYLINGQYLSVTHSLGIAMYPADGGSMELLLQNA 449

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D+A+Y AK++G+NR+  F+D
Sbjct: 450 DRAMYEAKRAGKNRIFFFND 469


>gi|313681790|ref|YP_004059528.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313154650|gb|ADR33328.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 312

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 88/160 (55%), Gaps = 8/160 (5%)

Query: 107 DCLSGLLNHSAFISSLGS-----YNEKLSIVFF--DIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ + N   F   + S      +++LS+V    DID FK +ND +G+  GDKV+ F++
Sbjct: 153 DPLTKVGNRQGFSEDIESSIEAGASKQLSMVLMMMDIDNFKFLNDEYGYVAGDKVLYFIA 212

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +  +  +   V R GGEEFA         +A  +A+ +R  IE S++ I SG ++H+T
Sbjct: 213 QTIKGMIRSGDKVYRFGGEEFAVVLNRCDVAQAQAIADKIRLKIEKSRL-IYSGKNVHVT 271

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +S G+      + +  +I RAD+ALY AKKS +N  V F 
Sbjct: 272 VSVGVTVHQAGDTLDDLIGRADKALYCAKKSNKNCTVLFD 311


>gi|293605461|ref|ZP_06687843.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292816189|gb|EFF75288.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 404

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 7/165 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-SYNEK----LSIVFFDIDYFKQINDNFGHPVGD 152
           + +  ++  D ++ LLN    + +L  S+N +      ++  D+D+FK+IND +GH  GD
Sbjct: 217 DSLRNMAARDPMTDLLNRRGLLEALTQSFNARNAGPARLLLLDVDHFKRINDTYGHQAGD 276

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
           +VI  ++D L          GR+GGEEF A  L +       LA  LR  +E   IN++ 
Sbjct: 277 EVICQVADILRSTVRRGDLTGRIGGEEFVAVFLDADGDRVIHLAERLRASVEGHVINVAG 336

Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
           S  ++  T++ GI+   H    +   +  AD ALY  K +GR R+
Sbjct: 337 SAGALRCTVTIGISPPFHGVHDLEEALRHADAALYRGKAAGRYRI 381


>gi|227326717|ref|ZP_03830741.1| putative signaling membrane protein [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 353

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 90/185 (48%), Gaps = 12/185 (6%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
            + LGY++ +   +L      + ++S  D ++ L N   +         S   Y    ++
Sbjct: 168 PIFLGYVTYTTALKLAEHKRMLMEVSIHDGMTSLYNRHHWERLLKHEYDSCQRYKRTATL 227

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           V FDID+FK  NDNFGH VGD+ I  L+ +L   F     +GR GG+EFA     +S  E
Sbjct: 228 VLFDIDHFKAFNDNFGHNVGDQAILLLARELTSGFRETDVIGRFGGDEFAVILPQTSAGE 287

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKK 249
           A    N +R+ +    +N +  P + + +S GIAE    E    I +   AD ALY AK 
Sbjct: 288 ALDAVNRIRESLSLKFLNQT--PQLAVFVSVGIAE-ISPEMGQYIDWLKTADMALYRAKN 344

Query: 250 SGRNR 254
            GR R
Sbjct: 345 KGRRR 349


>gi|118590829|ref|ZP_01548229.1| sensory box/GGDEF domain/EAL domain protein [Stappia aggregata IAM
           12614]
 gi|118436351|gb|EAV42992.1| sensory box/GGDEF domain/EAL domain protein [Stappia aggregata IAM
           12614]
          Length = 387

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 119/245 (48%), Gaps = 16/245 (6%)

Query: 26  TFMIYFSIFFSIFIATV-IFIANIFLFYIG-LTPFYGLEYILVENLSL---VIISITISL 80
           T  IY S  F   I+++ + +A +FL   G L   +GL     +   +   VI+ I +  
Sbjct: 132 TITIYASKPFRGLISSIGLILAFVFLAAEGTLRTVHGLVSGAPQGPGMIDDVIVDIHLMC 191

Query: 81  LLGYISGSILKELFISY----NRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSI 131
            L +IS +    L +S+    NR  + +R D L+G  N   F + L      +  +   +
Sbjct: 192 ALVFISLTGAFSLALSFELAANRNREDARRDPLTGAFNRREFQARLENLLKETPKDDFGL 251

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           V FD+D+FKQ+ND FGH  GD+ +  +  ++           RLGGEEFA      S + 
Sbjct: 252 VHFDLDHFKQVNDRFGHVAGDEALVRVCSEVKAHLRQNDCFARLGGEEFAVLLPSISREN 311

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250
           A  +A  LR+ I   +   +     ++T SAG+      K P + ++   DQ+LY +K++
Sbjct: 312 AYRVAERLRERIAGLRFEFAPR-EFNLTASAGVYHGNGSKLPSNELLKTVDQSLYQSKRT 370

Query: 251 GRNRV 255
           GRNRV
Sbjct: 371 GRNRV 375


>gi|51246372|ref|YP_066256.1| sensory transduction system, regulatory protein [Desulfotalea
           psychrophila LSv54]
 gi|50877409|emb|CAG37249.1| probable sensory transduction system, regulatory protein
           [Desulfotalea psychrophila LSv54]
          Length = 526

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 110/207 (53%), Gaps = 22/207 (10%)

Query: 71  LVIISITISLLLGYISGSIL--KELFISYNRISQLSRI-------DCLSGLLNHSAFISS 121
           ++  S+   +L   +  S+L  ++L    N + +++R        D L+G+ N     + 
Sbjct: 317 IIFTSVVAFVLRAIVKKSVLTQEKLLEKKNELQEVNRKLKLVSSSDGLTGVFNRRTMDNF 376

Query: 122 LG-----SYNEKLSIVFF--DIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVG 173
           L      +  EK SI F   DID FK  NDN+GH  GD+ +  +++QL  +   +   V 
Sbjct: 377 LSREWARAMREKSSISFIMADIDNFKLYNDNYGHLTGDECLKKVAEQLRKIPHRSTDLVA 436

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEP 232
           R GGEEF+   L ++  +AA +A D R+ IE+ QI  +  P+ + +TISAG++    K  
Sbjct: 437 RYGGEEFSLVLLNTT--DAASVAEDCRRAIEDLQIAHAFSPTSNVVTISAGVSTCIPKSG 494

Query: 233 I--STIIYRADQALYVAKKSGRNRVVC 257
           +  S ++  AD+ALY AK+ GRNR+  
Sbjct: 495 MDSSLLVAAADKALYRAKRLGRNRIAT 521


>gi|229591092|ref|YP_002873211.1| putative transmembrane sensory box GGDEF domain protein
           [Pseudomonas fluorescens SBW25]
 gi|229362958|emb|CAY49889.1| putative transmembrane sensory box GGDEF domain protein
           [Pseudomonas fluorescens SBW25]
          Length = 352

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/190 (34%), Positives = 88/190 (46%), Gaps = 10/190 (5%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---- 129
           I +   L LG+I       L      +  LSR D LSGLLNH A+   L    ++     
Sbjct: 154 ILMVYPLALGWICYRQAVTLARHKRELLALSRTDSLSGLLNHGAWKDHLELEFQRCRRGC 213

Query: 130 ---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
              +I   DID+FK IND +GH  GD V+  LS  L          GR GG+EF     G
Sbjct: 214 AGAAIALIDIDHFKIINDTYGHVTGDIVLRQLSKVLRQNLRATDLAGRYGGDEFCVILPG 273

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALY 245
                A  + + LR     + +  +  P++  ++S G+A        ST  +  ADQALY
Sbjct: 274 MPLNRATEVMDALRDRF--NALAYAQDPTLRASLSIGLAPYQPSHADSTHWLNDADQALY 331

Query: 246 VAKKSGRNRV 255
            AK SGRNRV
Sbjct: 332 EAKSSGRNRV 341


>gi|127512610|ref|YP_001093807.1| diguanylate cyclase with PAS/PAC sensor [Shewanella loihica PV-4]
 gi|126637905|gb|ABO23548.1| diguanylate cyclase with PAS/PAC sensor [Shewanella loihica PV-4]
          Length = 496

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 116 SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
           +A IS        L++  FDID+FK +ND  GH VGD V+  ++           FVGR 
Sbjct: 356 AAAISRSNRQQTPLAVCIFDIDHFKAVNDKHGHLVGDDVLQRVAKIFSDAIRKTDFVGRW 415

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           GGEEF      + ++ A   A+ LR+ ++     I     + IT+SAG++  C  +    
Sbjct: 416 GGEEFVIILEDTDKEGAKHFADKLRQEVKRRSQGIDF--PVAITLSAGVSVYCQDDKQDC 473

Query: 236 IIYRADQALYVAKKSGRNRVV 256
           +   ADQALY AK+SGR+ VV
Sbjct: 474 LFNHADQALYRAKESGRDCVV 494


>gi|304409412|ref|ZP_07391032.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS183]
 gi|307303770|ref|ZP_07583523.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica BA175]
 gi|304351930|gb|EFM16328.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS183]
 gi|306912668|gb|EFN43091.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica BA175]
          Length = 920

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 89/171 (52%), Gaps = 10/171 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++ L+  D L+ L N   F+  L          N +L+ V  D+D FK IND+FGH +G
Sbjct: 491 QLTHLAYFDPLTHLPNRMKFMMQLKQEVRQAKRLNLQLATVMIDVDLFKHINDSFGHSIG 550

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINI 210
           D+++  L+ +L    G    + R+GG+EF A   G    E A +A N LR++ E   I +
Sbjct: 551 DEMLVELAKRLRSQVGDQDVLSRIGGDEFVALISGIDNSEDATVAINQLRQVFEQPFI-V 609

Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           S+G  + +T S G++          T++  AD A+Y AK  GRN    +++
Sbjct: 610 STGDHLRLTASMGVSLYPSDGTDADTLLRNADAAMYRAKNDGRNNYAFYTE 660


>gi|258405321|ref|YP_003198063.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
 gi|257797548|gb|ACV68485.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
          Length = 457

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 11/165 (6%)

Query: 101 SQLSRI---DCLSGLLNHSAFIS----SLGSY---NEKLSIVFFDIDYFKQINDNFGHPV 150
            QL+RI   D L+ +     F+     +L  +   +  L++   DID+FKQIND +GH  
Sbjct: 285 EQLARIATTDSLTNVSTRQHFMELANRALAQHLRNSRPLTVCMLDIDHFKQINDTYGHGT 344

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+ +A+ ++ +         +GR GGEEF      + + EA  +A+ +R  +     + 
Sbjct: 345 GDRALAWFAETVSGELRATDIIGRFGGEEFCIVLPETDQDEAQQVAHRIRTAVTGGS-SA 403

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++ P   IT+S GIA       +  +I  AD+ALY AK  GRNR 
Sbjct: 404 AASPIPPITVSIGIALADTPASMEAVIQLADRALYAAKAKGRNRA 448


>gi|167463624|ref|ZP_02328713.1| hypothetical protein Plarl_13894 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 380

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 13/156 (8%)

Query: 107 DCLSGL-LNH--SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL + H     I ++   +   +++  DID FKQIND FGH VGD ++  +SD + 
Sbjct: 226 DNLTGLYVRHYLDGQIKTMQKQDAIGTLILVDIDCFKQINDTFGHQVGDSILIQVSDIVR 285

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
            +        R GGEE A     +S+ E   +A+++R  I        + PS  +T+S G
Sbjct: 286 SMIREQDITARWGGEELAIYLPVTSKNEGMQMADEIRTAIMQ-----KTSPS--VTVSCG 338

Query: 224 IAE-RCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
           +A+ +   + IS  ++ Y+AD ALY AK+SG+NRVV
Sbjct: 339 VADWKSTDDKISVESLFYKADMALYEAKRSGKNRVV 374


>gi|170288602|ref|YP_001738840.1| response regulator receiver modulated diguanylate cyclase
           [Thermotoga sp. RQ2]
 gi|170176105|gb|ACB09157.1| response regulator receiver modulated diguanylate cyclase
           [Thermotoga sp. RQ2]
          Length = 450

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 8/158 (5%)

Query: 104 SRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           S  D L+GL N  A   F+  +    + +++   DID FK+IND FGHPVGD+V+  +++
Sbjct: 295 SETDGLTGLFNKRAIMRFLEEVLRSGKNIAVAMMDIDDFKKINDTFGHPVGDEVLRAVAN 354

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINISSGPSIHIT 219
            L     +   VGR GGEEF      + E++A +   N + + I N       G    +T
Sbjct: 355 ILRETVKSGK-VGRYGGEEF-MVVFETGERDAVVKTMNSIMENIRNFDWQKIFGSEKKVT 412

Query: 220 ISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +S G+A  +    P+  +I  AD+ LY AK+SG++R V
Sbjct: 413 LSGGVAFSKKESSPVE-LIEEADKKLYTAKRSGKDRYV 449


>gi|157373984|ref|YP_001472584.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157316358|gb|ABV35456.1| putative diguanylate cyclase (GGDEF domain) [Shewanella sediminis
           HAW-EB3]
          Length = 578

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 109/225 (48%), Gaps = 21/225 (9%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           G  PF  L Y   E + ++I  + ++L L     +  +E  I+ ++    ++ID L+GL 
Sbjct: 362 GFIPFTDLTYRAAE-IGIIIDIVLLALALAVKFRATEREKLIAEHQ----AKIDPLTGLK 416

Query: 114 NHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
           N  AF     S+ ++      +S++  DIDYFK IND +GH VGD+V+   +  L     
Sbjct: 417 NRRAFYEITPSFWKQKRTRVGVSMIIIDIDYFKAINDTYGHTVGDEVLVQFATLLNKNLR 476

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
               V R GGEEF      +  +EA+ ++  L + I      I+    + +T S G+A  
Sbjct: 477 QQDIVARWGGEEFILLLPKTRLKEASTISKHLCESISKHAF-IADRNELQVTASIGLA-- 533

Query: 228 CHKEP----ISTIIYRADQALYVAKKSGRNRVVC--FSDIENNTC 266
            H  P    +  +I  ADQ LY AK+ G+N++      D+   TC
Sbjct: 534 -HGSPAQFTLEQLISLADQQLYRAKQRGKNQISYENSPDVPGGTC 577


>gi|324010125|gb|EGB79344.1| diguanylate cyclase domain protein [Escherichia coli MS 57-2]
          Length = 364

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 103/199 (51%), Gaps = 25/199 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKSGR 252
           R     AD ALY AKK+ R
Sbjct: 346 REWLKSADLALYKAKKARR 364


>gi|218900540|ref|YP_002448951.1| ggdef family protein [Bacillus cereus G9842]
 gi|218541164|gb|ACK93558.1| ggdef family protein [Bacillus cereus G9842]
          Length = 352

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 26/208 (12%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRI----------SQLSRIDCLSGLLN 114
           L++++++V + +  S++ GYI+       FIS N +           Q + +D L+GL N
Sbjct: 150 LIKDINIVGLYLISSIITGYIT-------FISANYVLQSNELFQTMKQYATVDALTGLGN 202

Query: 115 HSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
              F       IS+    N+ L ++  DID+FK +ND +GHP GD+V+  +   L     
Sbjct: 203 VRQFDLEMNRHISNKNMKNDSLCLLLIDIDHFKYVNDTYGHPAGDEVLKQVGCILRETSQ 262

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
            P    R GGEEFA             +   +   +E+    +  G  I IT+S G++E 
Sbjct: 263 FPDLAFRKGGEEFALLIPNKGLAYGIRMGEQICIAVESHPFQLLDGTKIKITVSVGVSE- 321

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++      I  AD ALY +K++GRN+V
Sbjct: 322 -YEGSSEQFIQAADDALYYSKRNGRNKV 348


>gi|329891029|ref|ZP_08269372.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328846330|gb|EGF95894.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 454

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 87/158 (55%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+  LN   F+SS+         + +  LS++  D+D+FK+IND  GHPVGD+V+  +
Sbjct: 292 DPLTRALNRR-FLSSILSREIGFANANHTPLSVLLLDVDHFKRINDTHGHPVGDEVLRQV 350

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           ++ +        FV R GGEEF    + +S  +AA +A  +R  +    I  +  P   I
Sbjct: 351 AEAVTENVRPSDFVFRYGGEEFLVVLVETSLHQAATIAERMRLALAAKPIAAAGLPPFSI 410

Query: 219 TISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T S G+ A R H +  + +I  AD ALY AK++GRNRV
Sbjct: 411 TASIGVAAHRGHPDE-NYLIKAADDALYRAKQNGRNRV 447


>gi|313673240|ref|YP_004051351.1| response regulator receiver modulated diguanylate cyclase
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939996|gb|ADR19188.1| response regulator receiver modulated diguanylate cyclase
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 428

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 11/172 (6%)

Query: 92  ELFISYNRISQLSRI-DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++  + N++  +S I D L+ L N   F  ++          N + SI+  DID+FK+IN
Sbjct: 257 DMLDAKNKLLTISSITDDLTKLYNRRFFWETIEKEHKRHNRINSEYSIIMLDIDHFKKIN 316

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           DNFGH  GD V++ ++  L         V R GGEEF      + ++ A ++AN +   I
Sbjct: 317 DNFGHGTGDLVLSDVAFSLKNSVRNTDIVARYGGEEFIVLLPDTKKENAIVVANKILNSI 376

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               ++  S P   IT+S G+A     +    II  AD+ LY AK +GRNR+
Sbjct: 377 REIPVHFRSEP---ITVSIGLASSREGDNYEKIISLADERLYKAKNNGRNRI 425


>gi|312884767|ref|ZP_07744468.1| diguanylate cyclase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367680|gb|EFP95231.1| diguanylate cyclase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 325

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 96/177 (54%), Gaps = 7/177 (3%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-SYNEKLSIV----FFDIDYFKQIND 144
           + + ++    + +L+  D L+ +LN  AF   L  ++N+  + V      DID+FK+IND
Sbjct: 131 ITQTYMDEKELRRLADTDELTQVLNRRAFTRHLEHAFNDSTTTVVSCLMIDIDHFKEIND 190

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+VI  ++        +  ++GRLGGEEF      ++  +A  +A  +R+ + 
Sbjct: 191 RVGHLSGDEVITQVARICKDNIRSNDYIGRLGGEEFGIMLNRTNAIQAYDVAERIREAVA 250

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +S  +I  G  I  T+S GIAE   H   +  ++  AD+A+Y +K++GRN+V    D
Sbjct: 251 SSSCHI-DGHIIVPTVSIGIAELTEHVTSVRELMVNADKAMYYSKQTGRNQVTVHHD 306


>gi|229086612|ref|ZP_04218781.1| Sensory box/GGDEF family protein [Bacillus cereus Rock3-44]
 gi|228696694|gb|EEL49510.1| Sensory box/GGDEF family protein [Bacillus cereus Rock3-44]
          Length = 431

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 101/213 (47%), Gaps = 15/213 (7%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112
           I +  F G E+I +    L   S+   L    +  + + EL   Y    QL+  D L+ +
Sbjct: 222 IKMYNFEGEEFIFL----LRAASVPEDLSRFIVKCTDITELDELYQEQEQLAAFDPLTEI 277

Query: 113 LNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N   F   L          N  ++++ FDID FK++ND +GH  GD  +  L++ +   
Sbjct: 278 YNRLKFQQLLEEKWKSEERINRTMALILFDIDDFKKVNDTYGHDFGDLALIQLAELMKSK 337

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
            G+     R GGE+F+   + ++E+E   +A  LR  IE  Q +  S     +T S G+A
Sbjct: 338 MGSQHIFARWGGEKFSILVINTTEKEVFQVAESLRFFIETKQFSSISK----LTASFGVA 393

Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                     +I RAD ALY AKK+G+N+V  +
Sbjct: 394 LYEQGITKEELIQRADIALYEAKKNGKNQVRLY 426


>gi|205358891|ref|ZP_02665133.2| AdrA protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205340080|gb|EDZ26844.1| AdrA protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
          Length = 365

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
            LSL +I I   LL  ++S     +L     R+  +S  D ++G+ N   +   L +   
Sbjct: 169 TLSLPVI-ILYPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 227

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               ++ + +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EF
Sbjct: 228 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 287

Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237
           A    G+   ++AI A  + ++ E  + + +   P + + IS G+A      P++  I  
Sbjct: 288 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 338

Query: 238 YR-----ADQALYVAKKSGRNRV 255
           YR     AD ALY AK +GRNR 
Sbjct: 339 YREWLKSADMALYKAKNAGRNRT 361


>gi|149191412|ref|ZP_01869663.1| hypothetical protein VSAK1_22129 [Vibrio shilonii AK1]
 gi|148834761|gb|EDL51747.1| hypothetical protein VSAK1_22129 [Vibrio shilonii AK1]
          Length = 395

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/193 (35%), Positives = 97/193 (50%), Gaps = 21/193 (10%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
           +I+SI+ S+L   I+G  +K        I+ LS  D L+ L N  A        +    +
Sbjct: 202 LIVSISFSMLW-MINGRQVKA-------INALSYFDPLTQLGNRRALEVYIEEDLPKQLA 253

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD--QLVVVFGTPMFVGRLGGEEFAA 182
               +S++  DID+FK IND +GH  GDKVI  +SD  Q  +  G   F  R GG+E   
Sbjct: 254 RGTNVSVIMLDIDFFKMINDRYGHIAGDKVIRKVSDIIQDSLNGGNTTF--RFGGDEIMV 311

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
                   +A  LA  LR  +E    NI  G    I+ S G+A+    E   +++ RAD+
Sbjct: 312 VLYDMDLHQARALAEQLRLRVEKYG-NI-KGEEFSISCSFGVAQLVDDESWDSLVGRADK 369

Query: 243 ALYVAKKSGRNRV 255
           ALY AK+SGRN+V
Sbjct: 370 ALYEAKESGRNKV 382


>gi|146305770|ref|YP_001186235.1| diguanylate cyclase [Pseudomonas mendocina ymp]
 gi|145573971|gb|ABP83503.1| diguanylate cyclase [Pseudomonas mendocina ymp]
          Length = 375

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 85/167 (50%), Gaps = 15/167 (8%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LSR D L+ L N   F       +++     E LS+V  DID+FK++ND  GH  GD  +
Sbjct: 209 LSRTDSLTQLGNRYQFNNLFPSLVANALRQGEPLSLVLLDIDFFKKVNDEHGHAGGDACL 268

Query: 156 AFLSDQLVVVF---GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +  ++++  VF   G  +   RLGGEEF     G++  +A  +A   R+ +E+  + ++ 
Sbjct: 269 SAFAERMRQVFRRDGDALL--RLGGEEFGVLLPGTTLAQAREMAERFRQELESEGLQLAD 326

Query: 213 GPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              + +T S G+   ++           R D ALY AK+ GRNR+V 
Sbjct: 327 -QCLKLTTSLGVGSFDKRQDSDADAFFRRVDSALYRAKREGRNRLVA 372


>gi|87118234|ref|ZP_01074133.1| PAS:GGDEF protein [Marinomonas sp. MED121]
 gi|86165868|gb|EAQ67134.1| PAS:GGDEF protein [Marinomonas sp. MED121]
          Length = 299

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 9/172 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           E   + N++ +LSR D L+GL+N   F            + N   S++  DIDYFK+IND
Sbjct: 125 EYIYTQNKLEELSRTDPLTGLINRRVFDEMAEKEFYRYQNQNIHYSLLALDIDYFKRIND 184

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD V+A  S        +   + R+GGEEF      + +  A  +A  LR+ I 
Sbjct: 185 KYGHLTGDYVLASFSTLCEKNIRSQDKIARIGGEEFCIILPATDKVGAIEVAEKLRRAIS 244

Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           N++        I +T+S G+++ +        ++ RAD+ LY AK  GRN+V
Sbjct: 245 NARFK-QDEHEIAVTVSIGVSQVKMSDYDYVAMLKRADENLYRAKHQGRNQV 295


>gi|312962171|ref|ZP_07776663.1| GGDEF domain protein [Pseudomonas fluorescens WH6]
 gi|311283508|gb|EFQ62097.1| GGDEF domain protein [Pseudomonas fluorescens WH6]
          Length = 310

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 71/128 (55%), Gaps = 1/128 (0%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS++  DID+FK IND +GH  GD V+  ++  +         V R GGEEF      +S
Sbjct: 181 LSLLMLDIDHFKNINDTYGHAAGDNVLRTVATAIKSQLRNVDMVFRFGGEEFLILLSNTS 240

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
            + AA++   LR+  + +Q   + G  I +T+S G +     E   +++ RAD ALYVAK
Sbjct: 241 REAAAMVGERLRQAAQ-TQDYWAEGERIALTVSLGCSTLLAAESAESLLRRADNALYVAK 299

Query: 249 KSGRNRVV 256
           + GRNR+ 
Sbjct: 300 REGRNRLA 307


>gi|197337919|ref|YP_002157933.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
 gi|197315171|gb|ACH64620.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
          Length = 444

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 6/160 (3%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           Y ++S +   D ++G      +   L +  E  S +  DID+FK++ND +GH  GD VI 
Sbjct: 282 YVKVSIMRSYDHMTGFYRRDFYEPKLKAL-ESASFLMIDIDHFKRVNDTYGHDFGDIVIQ 340

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +S ++           R GGEEF        + +    A  +RK+IEN  I+      I
Sbjct: 341 QVSYRIKNCIRVNDIAIRWGGEEFIVIFQKIDQDDLMNKAEVIRKVIENKSID-----GI 395

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +ITIS G A++   E ++ +I RAD ALY +K +GRNRV 
Sbjct: 396 NITISIGGAKQRDFESVNEVIKRADAALYDSKNTGRNRVT 435


>gi|163742996|ref|ZP_02150379.1| diguanylate cyclase, putative/response regulator [Phaeobacter
           gallaeciensis 2.10]
 gi|161383679|gb|EDQ08065.1| diguanylate cyclase, putative/response regulator [Phaeobacter
           gallaeciensis 2.10]
          Length = 476

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 29/176 (16%)

Query: 107 DCLSGLLNH---SAFISSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GL N      F+  + S +    E  +++  D+D+FKQIND +GHPVGD V+   +
Sbjct: 296 DPMTGLFNRRYAKPFLERVASTSAKTGETFAVMLADLDHFKQINDLYGHPVGDAVLIEAA 355

Query: 160 DQLVVVFGTPMFVGRLGGEEF--AAAALGSSEQEAAILANDLRKIIENSQINISS-GPSI 216
            +L         + R+GGEEF     A+G +  EAA  A+DL   I +   +I      I
Sbjct: 356 KRLQTALRPVDLLARVGGEEFMIVMPAIGEAMAEAA--ASDLCNRINSKPFHIRGVDAPI 413

Query: 217 HITISAGI-----------------AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           H+TIS G+                 A + H   +S +I  AD+ALY AK +GRN+V
Sbjct: 414 HVTISIGVVIGGRAAAVDQRDGIDLAPQDHDSAVSALITNADRALYSAKHAGRNQV 469


>gi|146307747|ref|YP_001188212.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas mendocina ymp]
 gi|145575948|gb|ABP85480.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas mendocina ymp]
          Length = 717

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 95/187 (50%), Gaps = 14/187 (7%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           ++   + EL  +  ++  L+  D L+ L N +  I+ L         ++ + +++F D+D
Sbjct: 263 LTARDISELKQAQAQVQHLAYHDALTNLPNRAMLINRLTQQIALLKRHDMRSALLFIDLD 322

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK IND+ GHPVGD V+  ++ +L         V RLGG+EF     G   + + +   
Sbjct: 323 HFKHINDSLGHPVGDAVLRLVTARLEATVRLEDTVARLGGDEFVVLLCGLQGKRSEV-TR 381

Query: 198 DLRKIIEN-----SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSG 251
            +R++ E      ++  +  G  + +T S GIA    H E  + ++ RAD ALY AK SG
Sbjct: 382 QVRQVAEKLRHLLAEPMLLDGHHLQVTPSIGIALIPDHGETPADLLKRADIALYRAKDSG 441

Query: 252 RNRVVCF 258
           RN +  F
Sbjct: 442 RNAIQLF 448


>gi|296445716|ref|ZP_06887670.1| diguanylate cyclase [Methylosinus trichosporium OB3b]
 gi|296256819|gb|EFH03892.1| diguanylate cyclase [Methylosinus trichosporium OB3b]
          Length = 378

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 91/183 (49%), Gaps = 12/183 (6%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFF 134
           +LG    ++ KE   +   I+ +S  D L+G+ N  AF  ++       S  +K +++ F
Sbjct: 197 ILGVTLVALSKERLANRREIAAMS--DPLTGVANRRAFDRAIERATKSASVKQKSAVLVF 254

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND FGH VGD+++    +           + R+GGEEFAA    +    A  
Sbjct: 255 DLDNFKDINDRFGHAVGDQILTVFGEAATRNIRANDMLARIGGEEFAALLCPADRNVALA 314

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRN 253
           +A  +R    ++   ++ G     T+S G+A    + P      R AD ALY AK SGRN
Sbjct: 315 VAERIRLAFIDAASVLAEG---QATVSIGVALVEGRAPDYRETTRAADAALYRAKASGRN 371

Query: 254 RVV 256
           RVV
Sbjct: 372 RVV 374


>gi|152996746|ref|YP_001341581.1| putative periplasmic ligand-binding sensor protein [Marinomonas sp.
           MWYL1]
 gi|150837670|gb|ABR71646.1| putative periplasmic ligand-binding sensor protein [Marinomonas sp.
           MWYL1]
          Length = 965

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 79/156 (50%), Gaps = 8/156 (5%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N  AF   L          +  L+++  DID+FK+IND++ H +GDK I  L+
Sbjct: 807 DKLTGLPNRRAFDKWLSEKFIQAKQQHTPLALIIMDIDHFKKINDHYSHLIGDKAIKALA 866

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            QL+ +    +   R GGEEF       ++   A    +LR  IE    +      + +T
Sbjct: 867 KQLLQLADHQIHAARWGGEEFTLMIKDMNDANVAAYCENLRNSIETYDYS-DIAADLTMT 925

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S G+A     E    ++  ADQALY AK+ GRNRV
Sbjct: 926 VSMGVAFSHQVENYQDLLRLADQALYRAKEQGRNRV 961


>gi|300785226|ref|YP_003765517.1| GGDEF domain-containing diguanylate cyclase [Amycolatopsis
           mediterranei U32]
 gi|299794740|gb|ADJ45115.1| GGDEF domain-containing diguanylate cyclase [Amycolatopsis
           mediterranei U32]
          Length = 396

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 8/168 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +  +++   +R D  +GLLN    H     +L     ++ ++  D+D+FK+IND  GHPV
Sbjct: 225 VQLDQLKLAARTDQRTGLLNAIAWHEQAEHALERTRGRIGVLMIDLDWFKRINDTHGHPV 284

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+A ++  L         VGR GGEEFA       E E   +A  +R  I   +I  
Sbjct: 285 GDDVLAEVATVLTRTVRRGDTVGRYGGEEFAVLLPDVDEAEVRAIAERIRLRIRGLRITA 344

Query: 211 SSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRV 255
            +G ++ ++ + G A     EP   +  +I  AD ALY  KK+GR+RV
Sbjct: 345 PTGEAVTLSATIGAALDP-AEPGAGLDEMIRAADDALYAGKKAGRDRV 391


>gi|220935751|ref|YP_002514650.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997061|gb|ACL73663.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 568

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 88/174 (50%), Gaps = 24/174 (13%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISS----LGSYNEK---LSIVFFDIDYFKQINDNFGHPV 150
            +++ L+  D L+GL N  +F  +    LG          +   D+D+FK +ND  GH  
Sbjct: 398 QQLAHLATTDPLTGLANRRSFFEAAERELGRSRRAGYATVVAMLDLDHFKDVNDTHGHAA 457

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+++  +S  LV        VGRLGGEEF    +  S   A       R+I+E  +  +
Sbjct: 458 GDRILELVSRVLVKELRDADLVGRLGGEEFGLLLVDVSVAHA-------REIVERIRTRV 510

Query: 211 ---SSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVVC 257
               +G  + +T+SAGIA+ C  +P    +   +  AD+ALY AK+ GRNRV+ 
Sbjct: 511 MHCDTGLDLSVTLSAGIAD-C--DPAMLGLDVAMALADRALYEAKRQGRNRVIT 561


>gi|194451887|ref|YP_002044417.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194410191|gb|ACF70410.1| AdrA protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
          Length = 370

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
            LSL +I I   LL  ++S     +L     R+  +S  D ++G+ N   +   L +   
Sbjct: 174 TLSLPVI-ILYPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               ++ + +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EF
Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 292

Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237
           A    G+   ++AI A  + ++ E  + + +   P + + IS G+A      P++  I  
Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343

Query: 238 YR-----ADQALYVAKKSGRNRV 255
           YR     AD ALY AK +GRNR 
Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366


>gi|158338089|ref|YP_001519265.1| response regulator receiver modulated diguanylate cyclase protein
           [Acaryochloris marina MBIC11017]
 gi|158308330|gb|ABW29947.1| response regulator receiver modulated diguanylate cyclase protein,
           putative [Acaryochloris marina MBIC11017]
          Length = 330

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 92/175 (52%), Gaps = 11/175 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           EL ++ +++ ++S ID L+ + N   F S        +    + LS++  D+D+FK  ND
Sbjct: 148 ELKVANHKLEKISAIDSLTHINNRRRFDSIFLAEWIRMMRERQPLSLILCDVDHFKAYND 207

Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GHP GDK +  ++  +  V   +   V R GGEEF      + +  A  +A  +R  I
Sbjct: 208 TYGHPAGDKCLQQVARAISTVAKRSADCVARYGGEEFVVVLPNTDQSGAVHVAEAIRTEI 267

Query: 204 ENSQI-NISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRV 255
           E   I + SS  S ++++S G+A     + I  S +I   DQALY+AKK GRNR 
Sbjct: 268 EALSIPHCSSTVSQYVSLSLGVASIIPSKAIAPSQLIELTDQALYMAKKRGRNRT 322


>gi|163851175|ref|YP_001639218.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163662780|gb|ABY30147.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 417

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 127/263 (48%), Gaps = 26/263 (9%)

Query: 4   SLKDFLSIW--LCHEKNLESFSPHTFMIYFSIFFSIFIAT--VIFIANIFLFYIGLTPFY 59
           +L   L +W  L    ++  ++ +  ++ F  +F  F+ T  VI  AN  L     +P  
Sbjct: 130 ALSTALCMWEILRTPASMRLWTQYIVLLGFGGYFIAFLLTIGVIHFANERL----ASPES 185

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G+  +L +    V I +      GY++  ++ E   ++ ++S+L+  D L+GL N     
Sbjct: 186 GIYSLLFDLWCGVFIQV------GYLA--MVSER--AHLKLSRLADTDPLTGLANRRGLF 235

Query: 120 SSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           ++L           + +I+  DID+FK IND +GH  GD  +   +++L  V      V 
Sbjct: 236 AALSQRAGLSPSPPRCAILLADIDHFKAINDTYGHDGGDAALVGFAERLRGVMRKDDLVA 295

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEP 232
           R GGEEF      +    AA +A  LRK        + +G ++ +T S G+A     +E 
Sbjct: 296 RWGGEEFLVVLDQADATAAATVAERLRKSAAGQPFTV-NGAAVTVTASIGVAVVAAGEER 354

Query: 233 ISTIIYRADQALYVAKKSGRNRV 255
           I   + RAD ALY AK++GRNRV
Sbjct: 355 IDAALSRADAALYAAKRAGRNRV 377


>gi|78777234|ref|YP_393549.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78497774|gb|ABB44314.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Sulfurimonas denitrificans DSM 1251]
          Length = 427

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 86/180 (47%), Gaps = 27/180 (15%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLS----IVFFDIDYFK 140
            +L EL+I+          D L+ L N + F   I+ +  +  K      +V  DID+FK
Sbjct: 264 KLLAELYIT----------DSLTKLYNRAYFDETINMIVKHQRKADSDFILVLVDIDHFK 313

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH VGD+V+  ++  L         + R GGEEF             I  N+ +
Sbjct: 314 LINDTYGHQVGDEVLVAIAKTLKGSLRDNDLIARWGGEEFVIML-------KNITLNEAK 366

Query: 201 KIIENSQINISSG---PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            IIE  ++NI +     +I +T S G+ +    E    I  RAD ALY AKK GRNRVV 
Sbjct: 367 TIIEKVRVNIQNSIIRDNIKVTASFGLTKYIINEDSKEIFKRADDALYEAKKDGRNRVVV 426


>gi|325921139|ref|ZP_08183010.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           gardneri ATCC 19865]
 gi|325548411|gb|EGD19394.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           gardneri ATCC 19865]
          Length = 959

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 8/174 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           +L  L I  +   + +  D L+GL N   F       IS        L +   DID+FK+
Sbjct: 784 LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSGRSLVLAILDIDHFKR 843

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND++ H  GD V+  +   L+          RLGGEEFA     +S +EA  L   +R 
Sbjct: 844 INDHYSHASGDAVLHEVGVLLIAAARASDLPARLGGEEFALLLADTSLEEAQALCLRIRA 903

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +    Q +      + +T SAG+AE    +  S+++ RAD ALY AK +GR+R+
Sbjct: 904 LFHARQ-DWGGVDGLQVTFSAGVAELRDDDTGSSLMQRADHALYEAKSAGRDRI 956


>gi|264680167|ref|YP_003280076.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262210682|gb|ACY34780.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 521

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 89/180 (49%), Gaps = 10/180 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           L+    + + ++ L+R D L+GL N       L     +        S++F DID FK  
Sbjct: 320 LQRRIHAESELALLARTDGLTGLNNRRRLDEMLDQEWHRARRNHSIFSLLFVDIDRFKVY 379

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD VIA ++  +      P     R GGEEF      +S + A+ LA  +R 
Sbjct: 380 NDTYGHQAGDDVIATIAQCIGDNIRRPGDIAARYGGEEFIVVLPDTSLEGASCLAESIRA 439

Query: 202 IIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +    +  S     +IT+S G A  E  H   ++++I  AD+ALY AK +GRN+VV F+
Sbjct: 440 AVSQLSVEHSGSEFGYITVSIGCAAWEPEHDADVASVIRSADEALYKAKTTGRNKVVVFT 499


>gi|238894037|ref|YP_002918771.1| hypothetical protein KP1_1983 [Klebsiella pneumoniae NTUH-K2044]
 gi|238546353|dbj|BAH62704.1| putative membrane protein [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 306

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 80/154 (51%), Gaps = 13/154 (8%)

Query: 107 DCLSGLLNHSAFISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           D L+ L N   FI ++   +   L ++  DID+FK+IND++GH VGD+V+  L  QL  +
Sbjct: 151 DELTQLPNRRFFIDTIREKSGHALGLMILDIDFFKKINDSWGHLVGDEVLFSLGKQLAKL 210

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL----RKIIENSQINISSGPSIHITIS 221
               +   R+GGEEFA    G SE E   LA  +    R I+ N Q  +S        IS
Sbjct: 211 TSEQVQPARIGGEEFAIIVDGLSEPELHALAQSILANARTILINHQTPLS--------IS 262

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G+      E   T I + D+ALY AK +GR RV
Sbjct: 263 IGVGTWRPGEAQETFIRKVDEALYKAKHNGRGRV 296


>gi|238026056|ref|YP_002910287.1| diguanylate cyclase [Burkholderia glumae BGR1]
 gi|237875250|gb|ACR27583.1| Diguanylate cyclase [Burkholderia glumae BGR1]
          Length = 395

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 75/139 (53%), Gaps = 1/139 (0%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              LS++  D+D+FK IND +GH  GD V+   ++ ++        +GRLGGEEFA    
Sbjct: 250 GTPLSLLLIDLDHFKSINDTYGHAGGDAVLREFAELMLQKLRGGDALGRLGGEEFAVLLP 309

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            ++  +A  +A+ LR  +    +  ++G   + T S G+A R   E    +  RAD+ALY
Sbjct: 310 RTTLSDALRIADRLRDEVSRHTVETAAGLCSYST-SGGLASRMPGETFEQMSARADRALY 368

Query: 246 VAKKSGRNRVVCFSDIENN 264
            AK SGRNRV   + +  +
Sbjct: 369 DAKVSGRNRVCAHAGMSQS 387


>gi|188997461|ref|YP_001931712.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932528|gb|ACD67158.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 800

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 75/131 (57%), Gaps = 2/131 (1%)

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           +K +I+  D+D FK+IND FGH +GD+++  +   L  +      +GR GGEEF   +  
Sbjct: 414 KKFAILMLDMDDFKRINDTFGHDLGDEILKEIVKILKNIRRQQDIIGRYGGEEFIILSPD 473

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALY 245
           +  +EA  +A D+RK I    + +     I+I++S GIAE   H    S ++  AD ALY
Sbjct: 474 ADGKEALNIAEDIRKAISEKPVVVRDN-KIYISVSIGIAEFPIHGNSPSELLKAADIALY 532

Query: 246 VAKKSGRNRVV 256
            AKK G+N+ V
Sbjct: 533 KAKKEGKNKAV 543


>gi|157373721|ref|YP_001472321.1| GGDEF domain-containing protein [Shewanella sediminis HAW-EB3]
 gi|157316095|gb|ABV35193.1| GGDEF domain [Shewanella sediminis HAW-EB3]
          Length = 625

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 9/171 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L IS   +   ++ D L+GL N           I       +  S++ FDID FK IND 
Sbjct: 449 LLISRRTLKVRAQTDFLTGLANRGHTFKKGQKIIEKTIKKQQPASVIMFDIDDFKSINDR 508

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH +GD  I  +S +          VGR+GGEEF      +S+ EA  +A+ LR  IE 
Sbjct: 509 YGHHIGDLAIKSVSKRTRRWLKKHDLVGRIGGEEFLIVLENTSQTEAYDIADRLRHNIE- 567

Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            Q       ++ +TIS G+A    H   +  ++ +AD ALY AK SG+N+V
Sbjct: 568 EQFFQFDDVTVELTISLGVAALNEHTTTLIGLMKQADDALYRAKFSGKNKV 618


>gi|152964407|ref|YP_001360191.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216]
 gi|151358924|gb|ABS01927.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216]
          Length = 494

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 84/177 (47%), Gaps = 32/177 (18%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           + + +R D L+GL N +AF  +L    G    + S+ F D+D FK +ND  GH  GD+V+
Sbjct: 332 LRRQARTDALTGLANRTAFGEALDRAAGDPTARFSVAFVDLDDFKAVNDGRGHAAGDEVL 391

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-------------KI 202
             ++ +L           RLGG+EF            A+L  DLR              +
Sbjct: 392 RAVAARLRAAVREEDLCARLGGDEF------------AVLLRDLRGECVDALTARLAGAV 439

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +E   I ++ GP + +  S G+A R   E    ++  AD A+Y AK +GRNRV  F 
Sbjct: 440 VE--PIPVAGGP-VRVGASVGVAHRGPGEDAEQVLQHADVAMYAAKAAGRNRVRVFG 493


>gi|330939651|gb|EGH42955.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 308

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 8/170 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y   +Q +  D L+   N  A   SL         + + LS++  DID+FK++ND +GH 
Sbjct: 140 YRIATQTALRDPLTSTGNRIAMDQSLAREIEISRRHKQPLSLLMLDIDHFKKVNDEYGHH 199

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  L         V R GGEEF      +    A ++   L + + N +  
Sbjct: 200 TGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGADSAELIGQRLCQAVRNLEFR 259

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             S P++ +T+S G +     E   +++ RAD ALYVAK+ GRNR+   S
Sbjct: 260 ELS-PALTMTVSLGCSTLLPTETADSLLRRADNALYVAKREGRNRIAMAS 308


>gi|262164399|ref|ZP_06032137.1| GGDEF family protein [Vibrio mimicus VM223]
 gi|262026779|gb|EEY45446.1| GGDEF family protein [Vibrio mimicus VM223]
          Length = 326

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 15/180 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQI 142
           +++ +Y  I   S  D L+GLLN             I+     N +L I   D+D+FK I
Sbjct: 132 KIYRNYTVILHESERDKLTGLLNRRTLEDRLRNTFAINPSAEGNHQLWIAMLDLDHFKAI 191

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+FGH +GD+++   + Q+   FG    + R GGEEF        EQ      +  R+ 
Sbjct: 192 NDHFGHMIGDEILLMFAQQMQHYFGPSSQLFRFGGEEFVIVFSTGDEQAINRTLDGFRRH 251

Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           I          P I  ++ SAG       + + TI+  AD+ALY AK+ GR++V C+ ++
Sbjct: 252 IRQHTF-----PRIGELSFSAGFCSLRPGDYLPTILDHADKALYYAKEHGRDQVHCYENL 306


>gi|239909013|ref|YP_002955755.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239798880|dbj|BAH77869.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 555

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 8/165 (4%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G  N   F        +  G     L++   D+D+FK +ND  GHPVGD+++  +S
Sbjct: 375 DALTGCANRRRFGEAVAMAAAEAGRSGAPLALAMIDLDHFKLVNDRHGHPVGDRMLRHVS 434

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +         + RLGGEEFA    G  E  A    + +R  I  + +++  G  +  T
Sbjct: 435 GLIRGRLRPGELLARLGGEEFAVLLPGLDEAAARSRMDAVRLEIAATPLSV-DGLDVPQT 493

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +S G+      +P+  +   AD ALY+AKK GR++VV  S ++  
Sbjct: 494 VSVGVTADTGGKPVQELQREADMALYLAKKCGRDQVVAASCVDTR 538


>gi|27367856|ref|NP_763383.1| putative two-component response regulator and GGDEF family protein
           YeaJ [Vibrio vulnificus CMCP6]
 gi|27359429|gb|AAO08373.1| Putative two-component response regulator and GGDEF family protein
           YeaJ [Vibrio vulnificus CMCP6]
          Length = 451

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 12/166 (7%)

Query: 96  SYNRISQLSRI------DCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNF 146
           S  R  QL  +      D L+GL N   F  +L      + + +++  D D FK IND F
Sbjct: 289 SKTRKQQLDEVSSEVIKDELTGLHNRKIFNDTLFKDTLEDSQYTVIAIDGDGFKNINDTF 348

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+VI  +   +   F    F+ R GG+EF A       ++A+ L   L++ ++NS
Sbjct: 349 GHHVGDEVICQVGKSMKATFRRGDFLIRTGGDEFLAILPDCDHRKASELVGKLKQHLKNS 408

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            +       + I +SAG+A R   E +  ++ +AD+ALY AK+S R
Sbjct: 409 TLPY---KDLTIAVSAGVATRAQGETLQELMMQADEALYKAKESRR 451


>gi|51244314|ref|YP_064198.1| hypothetical protein DP0462 [Desulfotalea psychrophila LSv54]
 gi|50875351|emb|CAG35191.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 481

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 104/198 (52%), Gaps = 20/198 (10%)

Query: 72  VIISITISLLLGYISGSILKELFISY-------NRISQLSRIDCLSGLLNHSAF---ISS 121
           ++I++ ISL+   I+G IL   F +Y        ++ +++  D L+G+ N   F    + 
Sbjct: 285 LMINLGISLI---ITGIIL---FFAYLTIGGYQRKLEEMATTDSLTGIANRQIFDILFNQ 338

Query: 122 LGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
           +  ++ +    LS + FD+D+FK+IND++GHP GD ++  +S     +      + R GG
Sbjct: 339 MSKHSRRQGWPLSAIMFDLDHFKKINDSYGHPAGDLILKAVSQIAQNILRDSDILCRWGG 398

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EEF       +  +A  +A  +R+ +E +   I +   I IT S G+      +    +I
Sbjct: 399 EEFLILLPNCNTAQAQGVAEKIRQGLETASELIYNQQLISITASFGLTTLQDYDSKDELI 458

Query: 238 YRADQALYVAKKSGRNRV 255
            RAD ALY AK++GRNRV
Sbjct: 459 KRADIALYAAKENGRNRV 476


>gi|90424799|ref|YP_533169.1| response regulator PleD [Rhodopseudomonas palustris BisB18]
 gi|90106813|gb|ABD88850.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris BisB18]
          Length = 457

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 9/167 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N     + L +  E+       L+++  DID+FK IND++GH  GD V
Sbjct: 290 EMAITDGLTGLHNRRYMETHLATLAEQAGVRGKPLALMMLDIDFFKAINDSYGHDAGDDV 349

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   + ++           R GGEEF      +    A ++A  LR+ I      I  G 
Sbjct: 350 LREFAVRIRKSIRGIDLACRYGGEEFVVVMPETDLAVAGMVAERLRRAIAGELFAIEKGA 409

Query: 215 S-IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I +TIS G++    K EPI+ ++ RAD ALY AK  GRNRVV  +
Sbjct: 410 KRIEVTISIGLSTLEKKGEPIADVLKRADVALYRAKHDGRNRVVATA 456


>gi|157825448|ref|YP_001493168.1| response regulator PleD [Rickettsia akari str. Hartford]
 gi|157799406|gb|ABV74660.1| response regulator PleD [Rickettsia akari str. Hartford]
          Length = 450

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 90/191 (47%), Gaps = 13/191 (6%)

Query: 79  SLLLGYISGSILKELFIS--YNRISQ---LSRIDCLSGLLNHSAF-------ISSLGSYN 126
           S LL  I   + ++ +    +N + Q   L+  D L+GL N   F       I    + +
Sbjct: 258 SELLARIRTQLRRKQYQDNLHNDLEQSVNLAAKDGLTGLFNRRYFDIHLKQMIEKANNES 317

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
            KL ++  DID FK +ND +GH  GDKV+  +S  L         + R GGEEF      
Sbjct: 318 IKLYLLMCDIDNFKHVNDTYGHQAGDKVLTIVSRILKNTLRVTDLIARFGGEEFTILLTD 377

Query: 187 SSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAERCHKEPISTIIYRADQALY 245
               +A   A  +R  IE    +I      +  TIS G+ E    E I + I RAD+A+Y
Sbjct: 378 IDISKAIETAERIRVKIEYMDFHIEDQIEPLQKTISIGVTEYKKAESIESFIERADKAMY 437

Query: 246 VAKKSGRNRVV 256
            AK +GRN+VV
Sbjct: 438 EAKTTGRNKVV 448


>gi|171316354|ref|ZP_02905574.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
 gi|171098483|gb|EDT43285.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
          Length = 452

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 91/178 (51%), Gaps = 14/178 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142
           + LF ++  + + S  D L+G  N        H+ F+ +     E LS++  D+D+FK  
Sbjct: 275 QRLFEAHTILIRSSARDGLTGAFNRSHFNDHFHTLFLQAR-RQGEPLSLLMVDVDHFKAY 333

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD  +  +++ L      P   V R GGEEFA     +  + A ++A + R+
Sbjct: 334 NDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEFAIVLPNTGARGARLVAEEARE 393

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256
            +    + + S P+  +++S G A     E +ST   +I  AD ALY AK +GRNRVV
Sbjct: 394 AVLRLDLAMPSSPAGRVSVSVGCATVSADE-LSTPDALIEAADAALYRAKDAGRNRVV 450


>gi|197119303|ref|YP_002139730.1| diguanylate cyclase heme-binding site [Geobacter bemidjiensis Bem]
 gi|197088663|gb|ACH39934.1| diguanylate cyclase, putative heme-binding site [Geobacter
           bemidjiensis Bem]
          Length = 432

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 13/179 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           L+EL  +   +   +  D ++G+LN       L S       Y   L+++FFD+D FK I
Sbjct: 253 LQELKQANALLQSQATTDPVTGILNRRKCCELLESAIMESKRYGLPLALIFFDVDRFKSI 312

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-K 201
           ND +GH  GD V+  L+  +  +        R GGEEF      +  + A +LA  +R +
Sbjct: 313 NDTYGHDAGDSVLRELAGLVSGMIRKTDIFSRFGGEEFVLVVHNNDGRTARMLAEKIRSR 372

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + ++S I++       +T S G+A     +   +++ RADQA+Y AK +GRNRV    D
Sbjct: 373 VSQHSFIHVG-----QVTASFGVARLYPDDSAESLVKRADQAMYSAKHAGRNRVESLCD 426


>gi|126725221|ref|ZP_01741064.1| two component diguanylate cyclase [Rhodobacterales bacterium
           HTCC2150]
 gi|126706385|gb|EBA05475.1| two component diguanylate cyclase [Rhodobacterales bacterium
           HTCC2150]
          Length = 134

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 1/129 (0%)

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  D+D+FKQ+ND +GH  GD V+  +S +L         + R GGEEF A    ++++ 
Sbjct: 1   MLLDLDHFKQVNDKYGHVAGDIVLTEVSARLKANLRHIDLISRFGGEEFLAILTDTTKER 60

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKS 250
           A I+A  LR++I+   + ++ G +I +T+S G+A    +    + ++  AD ALY +K  
Sbjct: 61  AVIVAERLRRLIQEQPVCLADGTNIQVTVSIGMALSDANSAQCAAMLKDADGALYASKAE 120

Query: 251 GRNRVVCFS 259
           GRN V   S
Sbjct: 121 GRNLVTIAS 129


>gi|237730985|ref|ZP_04561466.1| inner membrane protein yeaI [Citrobacter sp. 30_2]
 gi|226906524|gb|EEH92442.1| inner membrane protein yeaI [Citrobacter sp. 30_2]
          Length = 473

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 5/156 (3%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D ++ + N   F  SL S   K  + ++  DID FK+IND +GH  GD+VI  + D +  
Sbjct: 316 DAMTKIYNRKLFYKSLKSSLAKGTVCVMVLDIDKFKRINDTYGHQEGDRVIISIVDIVNK 375

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAG 223
                    R+GGEEFA     + + EA ++A  +R+ +EN + I  S      +TIS G
Sbjct: 376 SIRDTDIFARVGGEEFAILLKCNDKDEAIVVAERIRRNVENGTTIPNSYNLKEKMTISIG 435

Query: 224 I-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   +   E    ++  AD ALY AK SGRN+ VC+
Sbjct: 436 VYCSKIDDESADKVVSYADAALYEAKNSGRNK-VCY 470


>gi|322614666|gb|EFY11595.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620185|gb|EFY17057.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623479|gb|EFY20318.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629223|gb|EFY26002.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631943|gb|EFY28697.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637319|gb|EFY34021.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642005|gb|EFY38615.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646232|gb|EFY42746.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322652501|gb|EFY48855.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653336|gb|EFY49669.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660515|gb|EFY56751.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664667|gb|EFY60860.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669280|gb|EFY65430.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322670826|gb|EFY66959.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678936|gb|EFY74991.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681964|gb|EFY77989.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685207|gb|EFY81204.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323194445|gb|EFZ79640.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323197019|gb|EFZ82161.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323206911|gb|EFZ91864.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210319|gb|EFZ95211.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323214561|gb|EFZ99312.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323223118|gb|EGA07461.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227067|gb|EGA11248.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230115|gb|EGA14235.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233853|gb|EGA17942.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323238453|gb|EGA22511.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244141|gb|EGA28150.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246301|gb|EGA30284.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251927|gb|EGA35790.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257924|gb|EGA41603.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261063|gb|EGA44655.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265007|gb|EGA48506.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272570|gb|EGA55977.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 370

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 25/203 (12%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
            LSL++I +   LL  ++S     +L     R+  +S  D ++G+ N   +   L +   
Sbjct: 174 TLSLLVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               ++ + +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EF
Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 292

Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237
           A    G+   ++AI A  + ++ E  + + +   P + + IS G+A      P++  I  
Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343

Query: 238 YR-----ADQALYVAKKSGRNRV 255
           YR     AD ALY AK +GRNR 
Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366


>gi|296272932|ref|YP_003655563.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
 gi|296097106|gb|ADG93056.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
          Length = 610

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 80/135 (59%), Gaps = 2/135 (1%)

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           +K+ ++  D+D+FK +ND +GH +GDKV+  LS  L         + R GGEEF    +G
Sbjct: 466 KKIGLLMLDMDHFKAVNDEYGHDIGDKVLKSLSRILEENVRESDIIVRYGGEEFMVLLIG 525

Query: 187 SSEQEAAI-LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQAL 244
              +E+A+ +A+ +   +  ++IN+ +G +I  T+S G++       +  T++  +D AL
Sbjct: 526 VDSEESAMNIAHKIGAKVRENEINVYAGTTIKKTVSIGLSMFPDDSSLFETVVKNSDIAL 585

Query: 245 YVAKKSGRNRVVCFS 259
           Y AK SGR++VV FS
Sbjct: 586 YEAKSSGRDKVVRFS 600


>gi|254560871|ref|YP_003067966.1| diguanylate cyclase [Methylobacterium extorquens DM4]
 gi|254268149|emb|CAX24038.1| putative diguanylate cyclase with GGDEF motif; putative membrane
           protein [Methylobacterium extorquens DM4]
          Length = 417

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 127/263 (48%), Gaps = 26/263 (9%)

Query: 4   SLKDFLSIW--LCHEKNLESFSPHTFMIYFSIFFSIFIAT--VIFIANIFLFYIGLTPFY 59
           +L   L +W  L    ++  ++ +  ++ F  +F  F+ T  VI  AN  L     +P  
Sbjct: 130 ALSTALCMWEILRTPASMRLWTQYIVLLGFGGYFIAFLLTIGVIHFANERL----ASPES 185

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G+  +L +    V I +      GY++  ++ E   ++ ++S+L+  D L+GL N     
Sbjct: 186 GIYSLLFDLWCGVFIQV------GYLA--MVSER--AHLKLSRLADTDPLTGLANRRGLF 235

Query: 120 SSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           ++L           + +I+  DID+FK IND +GH  GD  +   +++L  V      V 
Sbjct: 236 AALSQRAGLSPSPPRCAILLADIDHFKAINDTYGHDGGDAALVGFAERLRGVMRKDDLVA 295

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEP 232
           R GGEEF      +    AA +A  LRK        + +G ++ +T S G+A     +E 
Sbjct: 296 RWGGEEFLVVLDQADATAAATVAERLRKSAAGQPFTV-NGAAVTVTASIGVAVVAAGEER 354

Query: 233 ISTIIYRADQALYVAKKSGRNRV 255
           I   + RAD ALY AK++GRNRV
Sbjct: 355 IDAALSRADAALYAAKRAGRNRV 377


>gi|238762994|ref|ZP_04623961.1| Diguanylate cyclase [Yersinia kristensenii ATCC 33638]
 gi|238698752|gb|EEP91502.1| Diguanylate cyclase [Yersinia kristensenii ATCC 33638]
          Length = 372

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 3/164 (1%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +Y  +   + ID L+ L N ++    ++++ S  +   ++  D+D+FK +ND +GH  GD
Sbjct: 186 AYFAMKSRANIDKLTQLNNRASVEYRLATIHSTRQACGLLILDLDHFKLVNDTYGHDGGD 245

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++  +   L+ V     FVGR GGEEF         Q    +A  +R+ +EN ++ ++ 
Sbjct: 246 ILLTEVGRLLMSVTRDEDFVGRYGGEEFIIITHSHDPQTIKAVAERIRQCVENLEVQLAD 305

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  I  T S G +       +   +   D+ALY AK  GRNRVV
Sbjct: 306 GRKIKATTSIGASLYLPGMSMLKALKMTDEALYQAKGQGRNRVV 349


>gi|207739005|ref|YP_002257398.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           IPO1609]
 gi|206592376|emb|CAQ59282.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           IPO1609]
          Length = 347

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 12/178 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           F +  +++  +  D L+G L    F       +     + E L  ++ D+D+FK IND +
Sbjct: 163 FAAEAQLADRANTDHLTGRLARQRFFELGAFAVERARHHGEPLCALYLDVDHFKSINDAW 222

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+ +  LSD+L  V       GRLGG+EFA    G +   A  +   L+  +   
Sbjct: 223 GHAAGDEALVALSDELAGVLRPHDLFGRLGGDEFAVLLPGCNLAAALAVVERLKTAVAAH 282

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +      P   +T+S G A    ++ ++ ++  AD AL  AK+ GRNRV   S   N+
Sbjct: 283 R-----HPMGRLTVSVGAAPLRPRQELAHLLADADLALIEAKRRGRNRVCVSSGSAND 335


>gi|149187081|ref|ZP_01865387.1| hypothetical protein ED21_23488 [Erythrobacter sp. SD-21]
 gi|148829292|gb|EDL47737.1| hypothetical protein ED21_23488 [Erythrobacter sp. SD-21]
          Length = 645

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 91/182 (50%), Gaps = 17/182 (9%)

Query: 93  LFISYNRISQLSR-------IDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQ 141
           L +  NR     R        D L+G+ N  A   +LG +  K    ++I   D+D FK 
Sbjct: 204 LEVERNRARDAERSAQKQASTDPLTGIANRRALTRALGDHTSKEAGDIAIASIDLDGFKP 263

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLR 200
           IND FGH  GD  +A ++ +LV  FG+   V R+GG+EFA   +G   +  A+ A  +L 
Sbjct: 264 INDVFGHDTGDIALACIATRLVEKFGSESLVARMGGDEFAILWMGPGARTNALSALPELT 323

Query: 201 KIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             I  S+   + G ++ I    G+A  +   +EP S ++ +AD ALY AK  G  +   F
Sbjct: 324 AAI--SEPLEAGGRTLRIGGCVGVAMGDGSGQEP-SALLSQADAALYEAKAKGSGKSAVF 380

Query: 259 SD 260
           SD
Sbjct: 381 SD 382


>gi|148556371|ref|YP_001263953.1| diguanylate cyclase [Sphingomonas wittichii RW1]
 gi|148501561|gb|ABQ69815.1| diguanylate cyclase [Sphingomonas wittichii RW1]
          Length = 343

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 89/159 (55%), Gaps = 8/159 (5%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           ++ D L+ LLN  AF  ++ ++   L      S+ F D+D+FK IND +GH +GD V+  
Sbjct: 180 AKQDHLTRLLNLRAFREAMQAHAGDLRPDGGFSVAFVDVDHFKAINDRYGHAIGDAVLVA 239

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           L+  L      P  V R+GGEEFA    G+   EAA  A  +R  +   Q++ + G ++ 
Sbjct: 240 LARTLEAAVRAPGEVARIGGEEFAILLPGADLAEAAPAAERMRAAVAAMQVD-AGGATLS 298

Query: 218 ITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +T+S G+ A R   + I  ++  AD A+Y AK+ GRNRV
Sbjct: 299 VTVSIGLAASRSSFDTIDALLQAADAAMYEAKRGGRNRV 337


>gi|83749693|ref|ZP_00946673.1| Hypothetical Protein RRSL_00567 [Ralstonia solanacearum UW551]
 gi|83723655|gb|EAP70853.1| Hypothetical Protein RRSL_00567 [Ralstonia solanacearum UW551]
          Length = 373

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 12/178 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           F +  +++  +  D L+G L    F       +     + E L  ++ D+D+FK IND +
Sbjct: 189 FAAEAQLADRANTDHLTGRLARQRFFELGAFAVERARHHGEPLCALYLDVDHFKSINDAW 248

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+ +  LSD+L  V       GRLGG+EFA    G +   A  +   L+  +   
Sbjct: 249 GHAAGDEALVALSDELAGVLRPHDLFGRLGGDEFAVLLPGCNLAAALAVVERLKTAVAAH 308

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +      P   +T+S G A    ++ ++ ++  AD AL  AK+ GRNRV   S   N+
Sbjct: 309 R-----HPMGRLTVSVGAAPLRPRQELAHLLADADLALIEAKRRGRNRVCVSSGSAND 361


>gi|311108884|ref|YP_003981737.1| diguanylate cyclase [Achromobacter xylosoxidans A8]
 gi|310763573|gb|ADP19022.1| diguanylate cyclase, GGDEF domain protein 18 [Achromobacter
           xylosoxidans A8]
          Length = 588

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 14/182 (7%)

Query: 86  SGSILKELFISYNRISQ----LSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVF 133
           + + +++L +  +R+ Q    ++  D L+GLLN  AF   L +          + L+ + 
Sbjct: 399 NAAAVRKLELERDRLIQDLAIMAETDFLTGLLNRRAFEKRLEAALDDMRHDDGDGLTFIL 458

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           FD+D+FK IND  GH  GD+ +  ++D     F     V R+GGEEFAA       +   
Sbjct: 459 FDLDHFKSINDTHGHATGDEALKTVADLCRSTFRQSDVVARVGGEEFAALCRSRRPEPVR 518

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSG 251
            +A  +R  I  +QI+        +T S G+A     +   +  +  RAD+ LY AK +G
Sbjct: 519 DVAERMRLNIARTQISAGGAARFSMTASFGVAHARSGDTAALENLSRRADELLYKAKLNG 578

Query: 252 RN 253
           RN
Sbjct: 579 RN 580


>gi|240138328|ref|YP_002962800.1| putative diguanylate cyclase with GGDEF motif; putative membrane
           protein [Methylobacterium extorquens AM1]
 gi|240008297|gb|ACS39523.1| putative diguanylate cyclase with GGDEF motif; putative membrane
           protein [Methylobacterium extorquens AM1]
          Length = 417

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 127/263 (48%), Gaps = 26/263 (9%)

Query: 4   SLKDFLSIW--LCHEKNLESFSPHTFMIYFSIFFSIFIAT--VIFIANIFLFYIGLTPFY 59
           +L   L +W  L    ++  ++ +  ++ F  +F  F+ T  VI  AN  L     +P  
Sbjct: 130 ALSTALCMWEILRTPASMRLWTQYIVLLGFGGYFIAFLLTIGVIHFANERL----ASPES 185

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G+  +L +    V I +      GY++  ++ E   ++ ++S+L+  D L+GL N     
Sbjct: 186 GIYSLLFDLWCGVFIQV------GYLA--MVSER--AHLKLSRLADTDPLTGLANRRGLF 235

Query: 120 SSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           ++L           + +I+  DID+FK IND +GH  GD  +   +++L  V      V 
Sbjct: 236 AALSQRAGLSPSPPRCAILLADIDHFKAINDTYGHDGGDAALVGFAERLRGVMRKDDLVA 295

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEP 232
           R GGEEF      +    AA +A  LRK        + +G ++ +T S G+A     +E 
Sbjct: 296 RWGGEEFLVVLDQADATAAATVAERLRKSAAGQPFTV-NGAAVTVTASIGVAVVAAGEER 354

Query: 233 ISTIIYRADQALYVAKKSGRNRV 255
           I   + RAD ALY AK++GRNRV
Sbjct: 355 IDAALSRADAALYAAKRAGRNRV 377


>gi|323702872|ref|ZP_08114530.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Desulfotomaculum nigrificans DSM 574]
 gi|323532130|gb|EGB22011.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Desulfotomaculum nigrificans DSM 574]
          Length = 808

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 13/171 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGD 152
           + QLS  D L+   N   F   L    E       K S++  DID FK IND FGH  GD
Sbjct: 643 LRQLSVTDVLTNAYNRRYFTQKLEEEIERAKRADRKFSLIILDIDRFKSINDRFGHNAGD 702

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  +++ +         + R GGEEF      ++ + AA LA +LR+ +  SQ++I  
Sbjct: 703 LVLKSIAELIKNRIRKIDTLARWGGEEFVILLPDTTVKNAARLAEELRESL--SQMDI-- 758

Query: 213 GPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            P + H+T S G+A  C  + + T++ +AD  +Y AK +GRN V   ++ E
Sbjct: 759 -PGVGHVTASFGVAGYCPGDMVDTLVNKADNMMYEAKAAGRNCVRYMNECE 808


>gi|206578784|ref|YP_002239380.1| putative membrane-bound diguanylate cyclase [Klebsiella pneumoniae
           342]
 gi|288936230|ref|YP_003440289.1| diguanylate cyclase [Klebsiella variicola At-22]
 gi|290510714|ref|ZP_06550084.1| membrane-bound diguanylate cyclase [Klebsiella sp. 1_1_55]
 gi|206567842|gb|ACI09618.1| putative membrane-bound diguanylate cyclase [Klebsiella pneumoniae
           342]
 gi|288890939|gb|ADC59257.1| diguanylate cyclase [Klebsiella variicola At-22]
 gi|289777430|gb|EFD85428.1| membrane-bound diguanylate cyclase [Klebsiella sp. 1_1_55]
          Length = 306

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 80/154 (51%), Gaps = 13/154 (8%)

Query: 107 DCLSGLLNHSAFISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           D L+ L N   FI ++   +   L ++  DID+FK+IND++GH VGD+V+  L  QL  +
Sbjct: 151 DELTQLPNRRFFIDTIREKSGHALGLMILDIDFFKKINDSWGHLVGDEVLFSLGKQLAKL 210

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL----RKIIENSQINISSGPSIHITIS 221
               +   R+GGEEFA    G SE E   LA  +    R I+ N Q  +S        IS
Sbjct: 211 TSEQVQPARIGGEEFAIIVDGLSEPELHALAQSILANARTILINHQTPLS--------IS 262

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G+      E   T I + D+ALY AK +GR RV
Sbjct: 263 IGVGTWRPGEAQETFIRKVDEALYKAKHNGRGRV 296


>gi|190575817|ref|YP_001973662.1| putative GGDEF signaling/response regulator protein
           [Stenotrophomonas maltophilia K279a]
 gi|190013739|emb|CAQ47374.1| putative GGDEF signaling/response regulator protein
           [Stenotrophomonas maltophilia K279a]
          Length = 526

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 100/200 (50%), Gaps = 17/200 (8%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNE------K 128
           +  +L  G  S  +  +L      + QL+R D L+G+ N   F + L S +N       +
Sbjct: 323 VVATLGFGLRSVLLQTDLLERQAALDQLARQDGLTGVANRREFDARLTSEWNRARRSGTE 382

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187
           L ++  DID+FK  ND  GHP GD+ +  ++  L  + G     V R GGEEFA    GS
Sbjct: 383 LGLLLVDIDHFKAFNDQHGHPAGDRCLQAVAGVLKAIAGRGGDSVARYGGEEFAVIVPGS 442

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQAL 244
                  LA  LR+ +E   + +  GP   ++IS G+    H   +++   ++  AD  L
Sbjct: 443 PLSGVLALAERLREAVE--ALPLPEGP---VSISVGVGY-LHPPALASADQLLADADAGL 496

Query: 245 YVAKKSGRNRVVCFSDIENN 264
           Y AK++GRN+V+  + + ++
Sbjct: 497 YAAKRAGRNQVILHAHVLDD 516


>gi|152989885|ref|YP_001355607.1| hypothetical protein NIS_0135 [Nitratiruptor sp. SB155-2]
 gi|151421746|dbj|BAF69250.1| hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 622

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 86/160 (53%), Gaps = 11/160 (6%)

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           ++ D L+ L N SA+       +S    Y    S++  DID+FK+IND +GH  GDKV+ 
Sbjct: 462 AQTDVLTNLPNRSAYQMKLEEQMSLFERYQTVFSMLCIDIDHFKKINDTYGHKAGDKVLQ 521

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++  +     +   V R+GGEEF A    +    A   A  LR +I++ Q+ +    S 
Sbjct: 522 EVAKIMRKTLRSSDTVFRIGGEEFVALLPETDLVAAKQAAQKLRTMIQD-QMKLG---SY 577

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++T+S G+ +    +   +I  R D+ LY AK++GRN+VV
Sbjct: 578 NVTVSIGVTQVNFDDTYDSIFMRCDKCLYHAKQNGRNQVV 617


>gi|74318041|ref|YP_315781.1| response regulator receiver modulated diguanylate cyclase
           [Thiobacillus denitrificans ATCC 25259]
 gi|74057536|gb|AAZ97976.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 632

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 91/184 (49%), Gaps = 25/184 (13%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            I  EL ++  R++  +  D L+GL N  + +  L          +  L+++  DID+FK
Sbjct: 445 QIAAELAVANRRLANAALTDALTGLPNRRSAMDQLEQAWSAAARADTPLAVMVVDIDHFK 504

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF--------AAAALGSSEQEA 192
            IND  GH +GDKV+   ++ L         V R+GGEEF         AAA+ S+E+  
Sbjct: 505 HINDTHGHALGDKVLREAANALRASSRREDSVCRIGGEEFLVICPNTDLAAAMQSAER-- 562

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSG 251
                 LR  +   +I +       IT S G+A R +    I  ++  ADQALY AK++G
Sbjct: 563 ------LRATLSARRIAVGEAECT-ITASIGVAVREYDTADIDGLVSAADQALYAAKEAG 615

Query: 252 RNRV 255
           RN+V
Sbjct: 616 RNQV 619


>gi|127513928|ref|YP_001095125.1| diguanylate cyclase [Shewanella loihica PV-4]
 gi|126639223|gb|ABO24866.1| diguanylate cyclase [Shewanella loihica PV-4]
          Length = 585

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 95/198 (47%), Gaps = 16/198 (8%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS---SLGSY 125
           +SL+I  IT+     Y S +I K       R+ QL+  D L+ + N   F     S  +Y
Sbjct: 378 ISLLIAIITLLGFWAYKSWTIQK-------RLKQLAEYDALTHVFNRGHFTQVAQSALTY 430

Query: 126 NE----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
            E     LS + FD+D FKQIND +GH +GD V+  ++              R+GGEEF 
Sbjct: 431 CESSEVDLSYILFDLDNFKQINDKYGHAIGDWVLKKVAKACQAQGRKNDIFARIGGEEFC 490

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRA 240
            A  G   Q A  LA   RK I       ++G    +T S GI + +     +  +I  A
Sbjct: 491 IALPGCDLQTAVKLAEACRKAIAGIDCG-ATGHEFEVTASFGITDTQMSGYKLERLINDA 549

Query: 241 DQALYVAKKSGRNRVVCF 258
           D A+Y +K++GR+R+  F
Sbjct: 550 DSAMYQSKETGRDRICIF 567


>gi|283785264|ref|YP_003365129.1| diguanylate cyclase YddV [Citrobacter rodentium ICC168]
 gi|282948718|emb|CBG88310.1| diguanylate cyclase YddV [Citrobacter rodentium ICC168]
          Length = 460

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 92/179 (51%), Gaps = 9/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE---KLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN     + F   +   N     LSI+  D+D FK
Sbjct: 281 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRAGTPLSILIIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +++ +   +A  +R
Sbjct: 339 EINDTWGHNTGDEILRRVSQAFYDNVRSSDYVFRYGGDEFIIVLTEATQADTLRIAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +E ++I    G +I +++S G A          +I  AD+ALY AK+ GRNRV  +S
Sbjct: 399 LRVEKTKIKSPDGATIPLSLSIGAAMFNGHPDYERLIQIADEALYTAKRQGRNRVELWS 457


>gi|158338091|ref|YP_001519267.1| PAS sensor diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158308332|gb|ABW29949.1| PAS sensor diguanylate cyclase, putative [Acaryochloris marina
           MBIC11017]
          Length = 600

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 100/195 (51%), Gaps = 18/195 (9%)

Query: 79  SLLLGYISGSIL---KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEK 128
            L L Y + ++L   ++L I+   + +L+ +D L+ + N   F S        L    + 
Sbjct: 131 QLELQYKNTTLLALSEQLEIANRELERLATMDGLTRVYNRRQFDSVFEREWHRLCREEQP 190

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187
           LS++  D+D+FK  ND +GH  GD+ +  ++  +  +   P   V R GGEEF      +
Sbjct: 191 LSVILGDVDHFKAYNDAYGHQAGDQCLQQVAQAIARIAQRPADCVARYGGEEFVVLLPNT 250

Query: 188 SEQEAAILANDLRKIIENSQINI---SSGPSIHITISAGIAERCHKE--PISTIIYRADQ 242
               A  +A  +R+ +E  ++NI   +S  S HI++S G+A     E  P S++I  ADQ
Sbjct: 251 DLSGALHVAEAIREEVE--ELNIPHRNSSVSKHISLSLGVASLIPNEDIPASSLIQSADQ 308

Query: 243 ALYVAKKSGRNRVVC 257
           ALY AK  GRN+V  
Sbjct: 309 ALYTAKDLGRNQVTA 323


>gi|53716656|ref|YP_105660.1| GGDEF domain-containing protein [Burkholderia mallei ATCC 23344]
 gi|254173944|ref|ZP_04880607.1| GGDEF domain protein [Burkholderia mallei ATCC 10399]
 gi|254200460|ref|ZP_04906825.1| putative diguanylate cyclase [Burkholderia mallei FMH]
 gi|254204485|ref|ZP_04910838.1| putative diguanylate cyclase [Burkholderia mallei JHU]
 gi|52422626|gb|AAU46196.1| GGDEF domain protein [Burkholderia mallei ATCC 23344]
 gi|147748072|gb|EDK55147.1| putative diguanylate cyclase [Burkholderia mallei FMH]
 gi|147754071|gb|EDK61135.1| putative diguanylate cyclase [Burkholderia mallei JHU]
 gi|160694991|gb|EDP84961.1| GGDEF domain protein [Burkholderia mallei ATCC 10399]
          Length = 489

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 16/171 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++L+  D L+GL N  A   +L          +  L+I+F DID+FK+ ND +GH VGD
Sbjct: 316 LARLAGTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGD 375

Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +V+A +S    Q     G    V R GGEEF      +    A ++A  +R  +    I 
Sbjct: 376 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 433

Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                   +T+S G+A    +      I+ I+  ADQALY AK  GRNRVV
Sbjct: 434 HEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAADQALYRAKADGRNRVV 484


>gi|291287174|ref|YP_003503990.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809]
 gi|290884334|gb|ADD68034.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809]
          Length = 313

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 9/165 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q+++ D L+ L NHS F   L         YN   +I   D+D+FK++ND +GH  GD
Sbjct: 143 LEQMAKKDGLTMLFNHSYFKDKLKDEMVRSERYNNCFTIAILDLDFFKRVNDQYGHVKGD 202

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+   ++ +           R GGEEFA     +   +A ++ + +R+ + N+ I  S 
Sbjct: 203 EVLKAFANIIKETVRNTDIAARYGGEEFAIIFTETDITDAVVVLDRIREKLNNT-IFSSE 261

Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
                +T SAG+ E       +  ++  AD+ALY++K  GRNR  
Sbjct: 262 TVCFKVTFSAGVTEYSKSYRDVEYMVNIADKALYISKSEGRNRTT 306


>gi|218530043|ref|YP_002420859.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
 gi|218522346|gb|ACK82931.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
          Length = 417

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 127/263 (48%), Gaps = 26/263 (9%)

Query: 4   SLKDFLSIW--LCHEKNLESFSPHTFMIYFSIFFSIFIAT--VIFIANIFLFYIGLTPFY 59
           +L   L +W  L    ++  ++ +  ++ F  +F  F+ T  VI  AN  L     +P  
Sbjct: 130 ALSTALCMWEILRTPASMRLWTQYIVLLGFGGYFIAFLLTIGVIHFANERL----ASPES 185

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G+  +L +    V I +      GY++  ++ E   ++ ++S+L+  D L+GL N     
Sbjct: 186 GIYSLLFDLWCGVFIQV------GYLA--MVSER--AHLKLSRLADTDPLTGLANRRGLF 235

Query: 120 SSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           ++L           + +I+  DID+FK IND +GH  GD  +   +++L  V      V 
Sbjct: 236 AALSQRAGLSPSPPRCAILLADIDHFKAINDTYGHDGGDAALVGFAERLRGVMRKDDLVA 295

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEP 232
           R GGEEF      +    AA +A  LRK        + +G ++ +T S G+A     +E 
Sbjct: 296 RWGGEEFLVVLDQADATAAATVAERLRKSAAGQPFTV-NGAAVTVTASIGVAVVAAGEER 354

Query: 233 ISTIIYRADQALYVAKKSGRNRV 255
           I   + RAD ALY AK++GRNRV
Sbjct: 355 IDAALSRADAALYAAKRAGRNRV 377


>gi|152970532|ref|YP_001335641.1| hypothetical protein KPN_01980 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150955381|gb|ABR77411.1| hypothetical protein KPN_01980 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 391

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 27/167 (16%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+ L N S F  +L     K      LS++  D+D+FK+IND++GH  GDKVI F + 
Sbjct: 232 DPLTRLYNRSFFYDTLNQQLAKVNAQHPLSVLISDLDHFKRINDSYGHVAGDKVIQFAAS 291

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            L           R+GGEEFA   + + E+EA  +A  +R  +   + ++       +TI
Sbjct: 292 VLESHSRVDDAAARIGGEEFALLLVNTGEKEAQAIAERIRLAVSAGESHLPE----RMTI 347

Query: 221 SAGI---------AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S G+         AE C        + RAD+A+Y AK +GRN+V+ +
Sbjct: 348 SMGVYTTYDNSVTAEAC--------VQRADEAMYEAKNNGRNQVIVW 386


>gi|115353263|ref|YP_775102.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
 gi|115283251|gb|ABI88768.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
          Length = 452

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 14/179 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142
           + LF ++  + + S  D L+G  N        H+ F+ +     E LS++  D+D+FK  
Sbjct: 275 QRLFEAHTMLIRSSARDGLTGAFNRSHFNDHFHTLFLQAR-RQGEPLSLLMVDVDHFKAY 333

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD  +  +++ L      P   V R GGEEFA     +  + A ++A + R+
Sbjct: 334 NDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEFAIVLPNTGARGARLVAEEARE 393

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVC 257
            +    + + S P+  +++S G A     E +ST   ++  AD ALY AK  GRNRVV 
Sbjct: 394 AVLRLDLAMPSSPAGRVSVSVGCATVSAAE-LSTPDALVEAADAALYRAKDGGRNRVVA 451


>gi|310827595|ref|YP_003959952.1| hypothetical protein ELI_2006 [Eubacterium limosum KIST612]
 gi|308739329|gb|ADO36989.1| hypothetical protein ELI_2006 [Eubacterium limosum KIST612]
          Length = 324

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 89/161 (55%), Gaps = 8/161 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGDKV 154
           N + +L+++D L+GLLN  +    + +  E+ +   ++  DID FK+IND FGH  GD V
Sbjct: 161 NELRRLAQLDSLTGLLNRVSVEQEINTRLEQGTGGVLMMIDIDDFKEINDVFGHLAGDTV 220

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSG 213
           +  LSD++   FG    +GR+GG+EF   A   +++      A    +I+    ++I   
Sbjct: 221 LKVLSDRIRESFGGQSIMGRVGGDEFVVFAEKMADRAGIGQTAQQFCEIVTQPVMDI--- 277

Query: 214 PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           P   IT+S GI++   +    S ++  ADQALY  KK+ +N
Sbjct: 278 PDCSITVSIGISQSPDNGSSYSALVRSADQALYARKKNSKN 318


>gi|238892956|ref|YP_002917690.1| putative transmembrane protein [Klebsiella pneumoniae NTUH-K2044]
 gi|238545272|dbj|BAH61623.1| putative transmembrane protein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 348

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 121/264 (45%), Gaps = 22/264 (8%)

Query: 11  IWLCH--EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           +W  H   K +    PH   +  ++   +FI T+ F  NI  F +   P +    I+ E 
Sbjct: 81  LWAWHVVTKAMLLTPPHFNYLVIALLSILFIGTIAFSNNITAFTLHSLPTFLACLIMAEG 140

Query: 69  ---------LSLVIISITISLLLGYISGS----ILKELFISYNRISQLSRIDCLSGLLNH 115
                      L I  IT+  ++   S +    ++ +L    N ++ LS +D L+GL N 
Sbjct: 141 EQWLRMTYCFMLPIAGITLQNIIQKRSDAFTQGLMDKLMHERNTLNDLSMLDPLTGLYNR 200

Query: 116 SAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
               + L +      +   ++  DID+FK  ND++GH +GD+ +  +S  +     +   
Sbjct: 201 RGLQNRLDTLLALDGDNHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRNAVRSRDI 260

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN--ISSGPSIHITISAGIAERCH 229
           V R GGEEF      SSE+ A   A  +R+ + + +I    +   + ++TIS G+    +
Sbjct: 261 VARFGGEEFMVLLTNSSEETAWKTAERIRQRVYDLKIPHMFNESVATNVTISIGLTPLIN 320

Query: 230 KEPISTIIYRADQALYVAKKSGRN 253
            + I   + RAD ALY AK  GRN
Sbjct: 321 -DNIEQALARADGALYEAKNKGRN 343


>gi|307945479|ref|ZP_07660815.1| GGDEF family protein [Roseibium sp. TrichSKD4]
 gi|307771352|gb|EFO30577.1| GGDEF family protein [Roseibium sp. TrichSKD4]
          Length = 262

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 101/225 (44%), Gaps = 5/225 (2%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
           + + F   I  +I +A   L    L P   LE       S+ +I++ +S  +   +   +
Sbjct: 14  WDVLFWTTITVLIALATTGLIGWILLP---LEVFAAAAPSMFLIALFLSSCMSLFACRQI 70

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF-DIDYFKQINDNFGHP 149
             L +++  I  L   D L+G      F  +        ++V   D+D+FK IND FGHP
Sbjct: 71  MHLQLAHKTIKLLHATDALTGTTTRRRFFEAQAETQAAPAVVMMVDVDHFKSINDRFGHP 130

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+V+  ++  L+       +V R+G EEF         ++A  LA DL   +   +  
Sbjct: 131 VGDEVLVQIAGTLMENVRDRDWVVRMGWEEFLVFLPELDWRKAQELATDLCSDVARLRFE 190

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           I     I ++IS G+AE      I   I  ADQA   AK  GRNR
Sbjct: 191 IDEH-EIDVSISIGLAEHDAANTIDGAIQAADQAPLKAKADGRNR 234


>gi|261211344|ref|ZP_05925632.1| GGDEF family protein [Vibrio sp. RC341]
 gi|260839299|gb|EEX65925.1| GGDEF family protein [Vibrio sp. RC341]
          Length = 456

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 100/217 (46%), Gaps = 29/217 (13%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKEL---------FISYN-RISQLSRIDCLSGL 112
           YI+VE        I    +LG ++ S L  +         F  Y  R+  ++  D L+G 
Sbjct: 248 YIIVEQKDEFNQDIWFKAMLGNLAISALVAIAVLGLAQMSFRGYQKRLEDMAVRDKLTGA 307

Query: 113 LNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV---IAFLSDQL 162
            +   F       IS+       LS+   D+D+FKQ+NDN+GHPVGD V   +  +  + 
Sbjct: 308 YSRQVFEELVEEAISNATKELHPLSLAVIDLDHFKQVNDNYGHPVGDLVLQRVVGICQRH 367

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
           +   GT   + R GGEEF         QEA      +R  I      +SS P   +T+S 
Sbjct: 368 IEQVGT---LCRWGGEEFVVLLPDMPLQEAYQRMEQIRHDI----AVMSSKP--QVTVSI 418

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           G+ E    E +  +  RADQA+Y AK  GRN+VV  S
Sbjct: 419 GVVEYSPNESLLQLFNRADQAMYTAKNEGRNKVVGLS 455


>gi|260777598|ref|ZP_05886491.1| sensory box/GGDEF family protein [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605611|gb|EEX31896.1| sensory box/GGDEF family protein [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 621

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 79/168 (47%), Gaps = 24/168 (14%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG---------SYNEKLSIVFFDIDYFKQINDNFGH 148
           NR+ ++S  D ++GL N   F   +          S+ E       DID+FK++ND  GH
Sbjct: 452 NRLREMSEKDSMTGLWNRRKFDQEMAAQCAKSKRYSHAEPTCFAIVDIDHFKRVNDRLGH 511

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII---EN 205
             GDK+I  +   L        F+ R+GGEEFA     +  QEA I+ N LR  +    +
Sbjct: 512 DEGDKIIKSVGTVLSDHLRETDFIARIGGEEFAIIMPHTRIQEAEIVTNRLRTSVSLQHD 571

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            QI +S G    +T   G  E  +K        RAD ALY +K  GRN
Sbjct: 572 EQITVSVG----VTDMDGSVENTYK--------RADVALYESKSLGRN 607


>gi|260464198|ref|ZP_05812391.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075]
 gi|259030001|gb|EEW31284.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075]
          Length = 393

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 81/156 (51%), Gaps = 8/156 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D LSGLLN   F       + +       +++V  D+D+FK +ND  GH  GD+VIA  +
Sbjct: 220 DPLSGLLNRRGFEERAARLLETCARAKFPVALVLADLDHFKALNDVHGHAAGDRVIADFA 279

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +L    GT    GR+GGEEFA     S    A + A  +R +     ++    P   +T
Sbjct: 280 AKLQAAAGTRGAAGRIGGEEFAVLLPLSDLASARLFAEAVRTLYSAGSVD-GLPPGTKVT 338

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+A R   E +  ++ RAD+ALY AKK+GR+ V
Sbjct: 339 ASFGVAARSGGEALEPLMRRADEALYKAKKNGRDSV 374


>gi|317048618|ref|YP_004116266.1| diguanylate cyclase [Pantoea sp. At-9b]
 gi|316950235|gb|ADU69710.1| diguanylate cyclase [Pantoea sp. At-9b]
          Length = 550

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 10/172 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R++  +  D L+ LLN SAF                 LS++  D+D+FK++ND +GH  
Sbjct: 380 ERLTWRANYDGLTRLLNRSAFFEQFVAQAAHCQQLQRPLSVIQLDVDHFKKVNDTWGHHA 439

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+ +  ++  +          GR+GGEEF      ++  EA+ +A  +R  +    I +
Sbjct: 440 GDQALIRVASVISHTLRKYDVAGRIGGEEFCIVLPETTLAEASAVAERIRARLAAKTILV 499

Query: 211 SSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++  + +IT+SAG+  +E        ++  +AD  LY+AK +GRNR VC +D
Sbjct: 500 NASTTFNITLSAGVTSSEEQGDYDAESLQAKADSRLYLAKTNGRNR-VCSAD 550


>gi|307154701|ref|YP_003890085.1| PAS/PAC and GAF sensors-containing diguanylate cyclase [Cyanothece
           sp. PCC 7822]
 gi|306984929|gb|ADN16810.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp.
           PCC 7822]
          Length = 679

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 16/163 (9%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N     +S+          N  L ++  DID+FK+ ND +GH  GD VI  + 
Sbjct: 506 DPLTGLFNRRYLEASMIRELHRATRNNNSLGVIILDIDHFKRFNDTWGHHAGDAVIKVMG 565

Query: 160 DQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L           R GGEEF      A+L  +E+ A  L  +++ +  N Q+      S
Sbjct: 566 KLLQENVRESDIACRYGGEEFIIILPDASLEDTEKRAKQLQTNIKTL--NVQVRDQKLES 623

Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             IT+S G+A    H +    +++RAD+ALY AK+ GR+R+VC
Sbjct: 624 --ITVSMGVASFPKHGDSYELLLHRADEALYQAKQQGRDRIVC 664


>gi|121535140|ref|ZP_01666956.1| diguanylate cyclase [Thermosinus carboxydivorans Nor1]
 gi|121306249|gb|EAX47175.1| diguanylate cyclase [Thermosinus carboxydivorans Nor1]
          Length = 794

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 88/177 (49%), Gaps = 20/177 (11%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           YN++  ++  D L+GL N   F   L        +    LS++ FD+D FK  ND +GH 
Sbjct: 615 YNQVKAMALSDGLTGLANRRNFDMFLKAELRRSFTLKRPLSLIMFDLDKFKTYNDTYGHL 674

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GDK++A + + L     +     R GGEEF+      +  EA  +A  LR+I+E +   
Sbjct: 675 TGDKLLAQIGEILRHNVRSIDLPARYGGEEFSIILPECTNAEALAIAEKLRQIVEETHFP 734

Query: 210 ISSGP-SIHITISAGIAERCHKEPIST---------IIYRADQALYVAKKSGRNRVV 256
            + G  +  IT S G+A     +P  T         +I  AD+ALY AK+ GRNRVV
Sbjct: 735 DNLGAFTARITASLGVATY---DPAITSGGVPDMEDLIAWADKALYQAKQQGRNRVV 788


>gi|304408640|ref|ZP_07390261.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|307305469|ref|ZP_07585217.1| diguanylate cyclase [Shewanella baltica BA175]
 gi|304352461|gb|EFM16858.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|306911772|gb|EFN42197.1| diguanylate cyclase [Shewanella baltica BA175]
          Length = 325

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 79/162 (48%), Gaps = 10/162 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG----SYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
            L+  D L+G LN     + L      Y ++    S++  DID+FK +NDNFGH +GD++
Sbjct: 164 HLANTDELTGALNRKPLKTKLELSVYEYQQQQIPASLLLIDIDFFKMVNDNFGHIMGDQL 223

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   S  +         + R GGEEF      +  + AAI+A DLR+ IE          
Sbjct: 224 LNKFSQHIQKKIRKDDLLFRFGGEEFLILLPNTQFESAAIVAEDLRRSIEEQHF---LDQ 280

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              +T S G+A+    + + T +   D  LY AK +GRN VV
Sbjct: 281 HTQVTCSIGVADLRQADTLDTWLKTCDNLLYTAKNAGRNCVV 322


>gi|289677142|ref|ZP_06498032.1| GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 308

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 8/170 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y   +Q +  D L+   N  A   SL         + + LS++  DID+FK++ND +GH 
Sbjct: 140 YRIATQTALRDPLTSTGNRIAMDQSLAREIEISRRHKQPLSLLMLDIDHFKKVNDEYGHH 199

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  L         V R GGEEF      +    A ++   L + + N +  
Sbjct: 200 TGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGADSAELIGQRLCQAVRNLEFR 259

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             S P++ +T+S G +     E   +++ RAD ALYVAK+ GRNR+   S
Sbjct: 260 ELS-PALTMTVSLGCSTLLPTETADSLLRRADNALYVAKREGRNRIAMAS 308


>gi|256823744|ref|YP_003147707.1| diguanylate cyclase with TPR repeats [Kangiella koreensis DSM
           16069]
 gi|256797283|gb|ACV27939.1| diguanylate cyclase with TPR repeats [Kangiella koreensis DSM
           16069]
          Length = 624

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 9/164 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q++  D L+ + N      +L       G   +  S++ FDID+FK IND FGH +GD+V
Sbjct: 459 QMAFTDNLTKMPNRRHVFRTLELQHKASGPGRKTYSVILFDIDFFKSINDRFGHNIGDRV 518

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           I    D    V      +GR+GGEEF      +  + A  +A  LR+  E         P
Sbjct: 519 IQSTRDICEAVLRETDTIGRIGGEEFLILLPDTELKAAYNIAERLREYFETYNFE-DIAP 577

Query: 215 SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + +T S G+ E     E +  ++ RAD+ LY AK  GRN+V+ 
Sbjct: 578 GLTVTSSFGVTEYLPEDETLDLVVNRADRLLYKAKNEGRNQVMA 621


>gi|170724153|ref|YP_001751841.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas putida
           W619]
 gi|169762156|gb|ACA75472.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida W619]
          Length = 328

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 78/130 (60%), Gaps = 4/130 (3%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+ +  DID FKQIND++GH  GD+V+  ++D    V       GR+GGEEFAA   G +
Sbjct: 199 LAFLLLDIDDFKQINDSYGHQEGDQVLQRIADSGKAVLRRGDLFGRIGGEEFAAVFPGCN 258

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAE-RCHKEPISTIIYRADQALYV 246
            Q A  +A  L++ I+  +++ S G  ++ +T+S G+       + + ++  RAD A+Y 
Sbjct: 259 AQVAEQIAERLQREIQ--RLSFSHGEQVYGVTVSQGLTGLTAEDDSLDSLFARADAAMYR 316

Query: 247 AKKSGRNRVV 256
           AK+ G+N++V
Sbjct: 317 AKRQGKNQIV 326


>gi|88859519|ref|ZP_01134159.1| Putative diguanylate cyclase (GGDEF domain) [Pseudoalteromonas
           tunicata D2]
 gi|88818536|gb|EAR28351.1| Putative diguanylate cyclase (GGDEF domain) [Pseudoalteromonas
           tunicata D2]
          Length = 394

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 9/171 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L IS  ++ +L+  D L+ +LN  +F       +S        +S +  D+D FK++ND 
Sbjct: 223 LQISNEKLKELASKDSLTQVLNRGSFFEMAQQLLSLAQRQKSTVSFILMDLDLFKEVNDT 282

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GDKV+   +  +  +      V R+GGEEFA     +   +A  +AN +R+ I +
Sbjct: 283 FGHFAGDKVLIHCTQTIQSLLRKSDLVARVGGEEFAVFLPDTGLDDAYRIANTIRQTIAD 342

Query: 206 SQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S + I +  +I  T+S G+       E I  +  R D  LY AK  GR+RV
Sbjct: 343 STLEIDN-KTIAYTLSIGVVCSEPDDELIDELFKRVDLKLYGAKDKGRDRV 392


>gi|330446061|ref|ZP_08309713.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490252|dbj|GAA04210.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 450

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 86/166 (51%), Gaps = 6/166 (3%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           YN+I +    D ++  L    +   +  ++  + ++  DID+FK IND +GH VGD VI 
Sbjct: 289 YNKIFKQYYFDNMTSFLRRDHYEQKIQKFSN-MDVIICDIDHFKSINDTYGHDVGDIVIE 347

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++ ++           R GGEEF     G + +     A  +RK + +  IN      I
Sbjct: 348 QVAKKIRNCIRKKDIAIRWGGEEFVIIFSGLNGEAIKNKAEQIRKAVCHEPIN-----QI 402

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           ++T+S G A +   E I   + RAD+ALY++K SGRN+V   S+++
Sbjct: 403 NVTLSCGCANQHDGEKIIDTLERADKALYLSKSSGRNQVTYHSEMK 448


>gi|152997862|ref|YP_001342697.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150838786|gb|ABR72762.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 426

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 9/173 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIN 143
           ++L I   ++  L+  D L+ +LN  +F  +     E       K S +  D+D+FK+IN
Sbjct: 253 EDLQILNEKLKYLATRDSLTDVLNRGSFFETAQQLLELSQRQKSKASFILMDLDFFKRIN 312

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH +GDKV+   +  L         +GR+GGEEFA     +    A  LA+ +R+ I
Sbjct: 313 DTYGHFIGDKVLIHFTQTLQGFLRKSDLLGRVGGEEFAIFLPDTGLDAACQLADKIRQTI 372

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255
            ++ + +  G ++  T+S G+     ++  I  +  R D  LY AK  GR+RV
Sbjct: 373 SDAALEV-EGKTVTYTVSLGVESSGPEDQLIDELFKRVDLKLYGAKDKGRDRV 424


>gi|77361379|ref|YP_340954.1| hypothetical protein PSHAa2463 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876290|emb|CAI87512.1| putative membrane protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 325

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 18/172 (10%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++L+  D L+G LN  A        IS    YN    + F D+D+FK++ND FGH  GD
Sbjct: 161 LAELNSTDPLTGALNRRALNDDTLAAISRAERYNSTYLLAFLDLDFFKKVNDEFGHAEGD 220

Query: 153 KVIAFLSDQLVVVFGTPMF----VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           +V+     QLV +  + +     + R GGEEF         +E     N LR+ I+N ++
Sbjct: 221 RVL----KQLVSITNSHIRESDKLYRFGGEEFVLIIPEIPPKEQVSFINKLRETIKN-EL 275

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              +G S  +T+S G+A       +++   RAD A+Y AKK GR+  V   D
Sbjct: 276 KTPAGNS--VTVSFGVAAWVPGTTVASWFKRADDAMYQAKKQGRDCAVFSKD 325


>gi|251790367|ref|YP_003005088.1| diguanylate cyclase [Dickeya zeae Ech1591]
 gi|247538988|gb|ACT07609.1| diguanylate cyclase [Dickeya zeae Ech1591]
          Length = 519

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 105/223 (47%), Gaps = 33/223 (14%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR-----------------ID 107
           L EN+  ++I+I + L + +  G +LK++ ++      +SR                 ID
Sbjct: 297 LTENMPAMVINIMVLLAMFFSGGFVLKQVRLTVRNKEAISRLHQEESNKNKVLQKLALID 356

Query: 108 CLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+ L N   F       ++        LS++  D+D+FK+ ND +GH +GD+ +  L  
Sbjct: 357 PLTKLANRRRFDLYLEQSLARARDEGSPLSLIMLDVDFFKRYNDTYGHVLGDRCLTQLGG 416

Query: 161 QL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI----LANDLRKIIENSQINISSGPS 215
            L  V         R GGEEFA    G + ++AA+    + +D+R+     + ++   P 
Sbjct: 417 VLSAVSLPDGALTARYGGEEFAIILPGMNGEQAAVYGERVVSDVRRCALPHEASLL--PE 474

Query: 216 IHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVV 256
             +T+S G+       P  I  +   ADQALY+AKK GR+R V
Sbjct: 475 QVVTVSVGVYSHSSDNPCDIQRLKEGADQALYLAKKKGRDRCV 517


>gi|90019727|ref|YP_525554.1| hypothetical protein Sde_0078 [Saccharophagus degradans 2-40]
 gi|89949327|gb|ABD79342.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 565

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N  A+       +     Y   L++   D+D+FK+IND FGH  GDKV+  ++
Sbjct: 407 DPLTSLPNREAYNERAFHELHRFKRYGHPLTLAVCDLDHFKKINDTFGHQAGDKVLKLVA 466

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +        FV R GGEEF      +  ++A  + + +R  I  +       P + IT
Sbjct: 467 QVVSTRLRNVDFVARYGGEEFVLVMPETDAEQAKTVLDKMRAAIAKTPFRFKDSP-VTIT 525

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +S GI +   ++ + +   RAD+ALY AK +GRN+ V
Sbjct: 526 MSFGIVQFRGEDSVESAFARADKALYEAKANGRNQCV 562


>gi|309774556|ref|ZP_07669582.1| putative HAMP domain/GAF domain/GGDEF domain protein
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917671|gb|EFP63385.1| putative HAMP domain/GAF domain/GGDEF domain protein
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 551

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 83/166 (50%), Gaps = 22/166 (13%)

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S  D LSG+ N SA        + S       +  +  DID FKQIND FGH  GD+VI 
Sbjct: 392 SSYDYLSGIYNRSALMQYGEDMLQSARRQAHSIGALMMDIDDFKQINDTFGHMQGDEVIR 451

Query: 157 FLSDQLVVVFGTPM---FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
               Q+  +         + R GGEEF       S+QE   LA D+R   E  +I+  + 
Sbjct: 452 ----QVTAIMKQKQRHGIIARFGGEEFILLIDQLSKQELYELAEDIRYACETCEISFENA 507

Query: 214 PSIHITISAGIAERCHKE-PIST---IIYRADQALYVAKKSGRNRV 255
            SIH TIS G    C++E P ST   +   ADQ LY+AK++G+N V
Sbjct: 508 -SIHFTISIGC---CYQEQPASTLKELFNEADQRLYIAKRNGKNYV 549


>gi|238917938|ref|YP_002931455.1| hypothetical protein EUBELI_02026 [Eubacterium eligens ATCC 27750]
 gi|238873298|gb|ACR73008.1| Hypothetical protein EUBELI_02026 [Eubacterium eligens ATCC 27750]
          Length = 342

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 107/202 (52%), Gaps = 7/202 (3%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           P Y +   ++ ++ L   +I++S  L Y +  I+  +  S  +++ ++ ID L+ L +  
Sbjct: 145 PLYEINKTII-SVMLACNAISVSAFLIYYTKVIVDLVIESEKKLNSIANIDLLTDLYSRR 203

Query: 117 AFISSLGSYN--EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
             I+ L  Y+  ++  +   D+D FK+IND +GH  GD V+ F++ ++  +    + + R
Sbjct: 204 YMINYLEEYDADDEGWLAMADVDDFKKINDTYGHNCGDYVLNFIAQKMKNICSNCV-ISR 262

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
            GGEEF     G+ +    +L   LR+ IENS+  I     I+I+++ G+A+R     I 
Sbjct: 263 WGGEEFLIHN-GTHDSTHEVLEK-LRREIENSEC-IYKQQKINISLTIGVAQRNADGDIE 319

Query: 235 TIIYRADQALYVAKKSGRNRVV 256
             I  AD  LY  K +G+N VV
Sbjct: 320 EWIKSADDRLYYGKNNGKNMVV 341


>gi|27380975|ref|NP_772504.1| hypothetical protein bll5864 [Bradyrhizobium japonicum USDA 110]
 gi|27354141|dbj|BAC51129.1| bll5864 [Bradyrhizobium japonicum USDA 110]
          Length = 799

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 90/168 (53%), Gaps = 22/168 (13%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +IS ++R D L+GL N   F   L       GS  ++L+++  D+D+FK IND+ GHP+G
Sbjct: 368 KISHMARHDALTGLPNRVLFHEQLEQGLRRTGS-GDQLAVLCLDLDHFKDINDSLGHPIG 426

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKI------IE 204
           D ++  +  +L    G    V RLGG+EFA   +G SE+ AA  LA  L ++      I+
Sbjct: 427 DALLKEVGRRLKATVGESDTVARLGGDEFAVVQIGRSEEAAARCLAGRLVEVISAPYEID 486

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           + QI I  G SI I++S        +     ++  AD ALY AK  GR
Sbjct: 487 DHQIVI--GVSIGISLSPQDGSNADE-----LLKNADLALYRAKADGR 527


>gi|317493110|ref|ZP_07951534.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919232|gb|EFV40567.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 395

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 5/161 (3%)

Query: 99  RISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+  ++  D L+G  N  +   F+       E  +++  D+DYFK+ ND++GH  GD  +
Sbjct: 232 RLDVMAHQDVLTGTANRRSMENFLDDALLQAEPFALLMLDVDYFKRYNDHYGHQAGDACL 291

Query: 156 AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSG 213
             ++D +     TP   V R GGEEF      SS  +A  +A  ++  + E S  + +S 
Sbjct: 292 VKVADIVKTSVRTPADLVARYGGEEFVIVLPASSLDDAVRVAERIQTNLREISLPHAASE 351

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            S  +T+S GI      +    II RAD+ALY AK+ GRNR
Sbjct: 352 VSEMVTVSMGITLSKDGDSAYGIIARADEALYRAKQQGRNR 392


>gi|297539182|ref|YP_003674951.1| diguanylate cyclase [Methylotenera sp. 301]
 gi|297258529|gb|ADI30374.1| diguanylate cyclase [Methylotenera sp. 301]
          Length = 413

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 101/184 (54%), Gaps = 15/184 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYF 139
           ++LK+LF S   +S+L+  D L+GL N          AF ++  S    ++I+F D+DYF
Sbjct: 226 NLLKQLFESTTVLSELAYYDALTGLPNRRLLDDRAAQAFKAAKRS-KHMVAIMFLDLDYF 284

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K +ND++GH VGD+++  ++ +L  +  T   V R+GG+EF         EQ+A + A  
Sbjct: 285 KAVNDDYGHEVGDQLLVSVAGRLKELLRTDDTVARIGGDEFVILLPKVDDEQQATVAAEK 344

Query: 199 LRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + K +  ++     G  + I  S G+A   +    P + ++  AD+A+Y AK+ GRN  V
Sbjct: 345 IIKAL--TKPFEVEGKMLEIGGSLGVAIYSKSGATP-ANLLKCADEAMYSAKRLGRNMFV 401

Query: 257 CFSD 260
            ++D
Sbjct: 402 VYAD 405


>gi|296534717|ref|ZP_06897101.1| sensory box/GGDEF family protein [Roseomonas cervicalis ATCC 49957]
 gi|296264955|gb|EFH11196.1| sensory box/GGDEF family protein [Roseomonas cervicalis ATCC 49957]
          Length = 507

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 99/217 (45%), Gaps = 16/217 (7%)

Query: 56  TPFYGL--------EYILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRI 106
            PF GL          I+V   S V +      LLGY      + E      RI+ ++R 
Sbjct: 107 APFSGLLNRNRHADGRIVVLETSGVPLLAEDGALLGYRGVDRDVTEREARTARIAWMARH 166

Query: 107 DCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL N   F S L    +  E   ++  D+DYFK++ND  GH  GD ++  ++++L 
Sbjct: 167 DSLTGLANRMEFQSRLEDRLARGEPAGLLLLDLDYFKEVNDQLGHASGDVLLRQVAERLT 226

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
            +        RLGG+EFAA      EQ  A+       + E  Q++   G    + +S G
Sbjct: 227 GLLPEGSLGARLGGDEFAALLAAGPEQAQAVAQRLAAALCEPYQLD---GHRAVVGVSCG 283

Query: 224 IA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +A    H   +S ++  AD ALY AK+ GR  V  + 
Sbjct: 284 LALAPRHAGSVSALLRCADLALYQAKQEGRGHVCLYG 320


>gi|192359905|ref|YP_001983808.1| GGDEF domain-containing protein [Cellvibrio japonicus Ueda107]
 gi|190686070|gb|ACE83748.1| GGDEF domain protein [Cellvibrio japonicus Ueda107]
          Length = 547

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 82/174 (47%), Gaps = 15/174 (8%)

Query: 99  RISQLSRI---DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           R  QLS     D L+GLL HS         +S      E LS+V  D+D+FK IND++GH
Sbjct: 373 RCRQLSDALDRDSLTGLLKHSRIKELVDLELSRAQRSGEPLSLVMLDLDHFKHINDSYGH 432

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GDKVI  ++  L         +GR GGEEF          EA  L + +R+  +    
Sbjct: 433 SAGDKVIRAMAHLLRQRLRKTDSLGRYGGEEFLIVLPRCGPDEAFKLVDKVRRHFQEIPF 492

Query: 209 NISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCFS 259
               G    +T SAGIA  C         T++  AD+ALY AK  GR+RV  + 
Sbjct: 493 Q-HQGCHFRVTTSAGIAS-CGASGAMAADTLLQAADEALYEAKHQGRDRVCIYQ 544


>gi|167567078|ref|ZP_02359994.1| GGDEF domain protein [Burkholderia oklahomensis EO147]
 gi|167571819|ref|ZP_02364693.1| GGDEF domain protein [Burkholderia oklahomensis C6786]
          Length = 311

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 86/168 (51%), Gaps = 9/168 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ + +  D L+G+ N   F + L         Y   LS++ FD+D+FK IND FGH VG
Sbjct: 144 KLQEYANRDGLTGIANRRFFEARLRDEFERWQRYGGNLSVLLFDLDHFKAINDRFGHVVG 203

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++ ++  V       GR GGEEFA     +S  EA  +A  +R+ I N+ I  +
Sbjct: 204 DNVLRVMARRVADVVRLQDTFGRFGGEEFALLLPCTSLDEAMHVAEKIRQTIGNTPIE-A 262

Query: 212 SGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCF 258
            G  + +T S G A          T++  AD ALY AK+ GRN  V F
Sbjct: 263 EGVRVPVTASVGGAAAHAGALTHETLVNEADAALYRAKRQGRNCSVAF 310


>gi|154253256|ref|YP_001414080.1| response regulator receiver modulated diguanylate cyclase
           [Parvibaculum lavamentivorans DS-1]
 gi|154157206|gb|ABS64423.1| response regulator receiver modulated diguanylate cyclase
           [Parvibaculum lavamentivorans DS-1]
          Length = 457

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 9/165 (5%)

Query: 102 QLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL N        +  +    +  + ++++ FDIDYFK +ND  GH  GD+V
Sbjct: 290 ELAITDGLTGLYNRRYMEGHLATLVDDAANTGKPVALLIFDIDYFKAVNDTHGHQAGDEV 349

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213
           +   +D++           RLGGEEF      +    A  +A  LR+ +      +  +G
Sbjct: 350 LKEFADRISANVRGIDLACRLGGEEFVVVMPDTDLTYAMTVAERLRQGVALRPFKLDETG 409

Query: 214 PSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            ++ +T+S GIA      +  + ++ RADQ LY AK+ GRNRVV 
Sbjct: 410 RTLDVTVSIGIAVTEGPNDTAAKLLGRADQGLYRAKRDGRNRVVA 454


>gi|290509423|ref|ZP_06548794.1| sensory box-containing diguanylate cyclase [Klebsiella sp. 1_1_55]
 gi|289778817|gb|EFD86814.1| sensory box-containing diguanylate cyclase [Klebsiella sp. 1_1_55]
          Length = 418

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 81/161 (50%), Gaps = 12/161 (7%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GLLN   F   + +     +   ++  DID+FK IND  GH  GD+V+  +S  L 
Sbjct: 256 DPLTGLLNRREFYRLVEAPSFIAQGFCLLLIDIDHFKSINDIHGHQKGDEVLLVISRILE 315

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   + R GGEEF      S    A ILA  +R+ +   Q       ++ +T+S G
Sbjct: 316 TSVDREDKIYRWGGEEFLLFLPHSPIARALILAEGIRQAVSEYQ-------TLSVTVSIG 368

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRV--VCFSDIE 262
           +AE    E I  +  R D+ALYVAK  GRNRV  + F ++E
Sbjct: 369 VAEHHDGEAIDQLFSRVDKALYVAKNGGRNRVSRLPFENVE 409


>gi|289577851|ref|YP_003476478.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Thermoanaerobacter italicus Ab9]
 gi|289527564|gb|ADD01916.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Thermoanaerobacter italicus Ab9]
          Length = 669

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 79/154 (51%), Gaps = 11/154 (7%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ + N   F+  L    E++       S++ FD+D+FK +ND FGH VGD V+  ++
Sbjct: 515 DPLTNIYNRRFFMQMLEQEIERVKRNKKPFSLIMFDLDHFKNVNDRFGHAVGDMVLKSVA 574

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           D +        +  R GGEEF      +S   A  LA  LRK I  ++++        +T
Sbjct: 575 DTVKGRIRKTDYFARWGGEEFIILLPETSLNNAVDLAEGLRKKISETELDGIG----KVT 630

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            S G+ E    + I TI+ RAD  LY AK++GRN
Sbjct: 631 ASFGVTEYRDTDTIDTILLRADNMLYEAKRAGRN 664


>gi|254784735|ref|YP_003072163.1| GGDEF domain-containing protein [Teredinibacter turnerae T7901]
 gi|237686237|gb|ACR13501.1| GGDEF domain protein [Teredinibacter turnerae T7901]
          Length = 436

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 91/173 (52%), Gaps = 12/173 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE---KLSIVFFDIDYFK 140
           SI K L +   +   L++ D L+GLLN        ++ L ++      ++ V  D+DYFK
Sbjct: 263 SINKLLNLQNKQFEDLAKTDQLTGLLNRIGIREPLLAGLNAWKHTQTPMAFVLIDLDYFK 322

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GH VGD+V+   ++ +        +V R GGEEF      +S  +A  +A  LR
Sbjct: 323 MVNDRYGHDVGDQVLRKSAELVRSNVRESDYVARWGGEEFLLMLPDTSLTQAEQIAEMLR 382

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             +E +QI+ ++     IT S G+A    ++ +  +   AD ALY AK++GRN
Sbjct: 383 SKLETAQIHTATT----ITASFGVAA-LKEDNLDNLFKAADDALYKAKQNGRN 430


>gi|254516869|ref|ZP_05128927.1| diguanylate cyclase [gamma proteobacterium NOR5-3]
 gi|219674374|gb|EED30742.1| diguanylate cyclase [gamma proteobacterium NOR5-3]
          Length = 399

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 14/190 (7%)

Query: 82  LGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSI 131
           LG I+ S+     +L  +  +++ L+ ID L+GL N      +L     +       LS+
Sbjct: 209 LGQITNSLRDRNLQLQEARRQLTDLANIDELTGLGNRRLINQTLREEVNRARRSHGWLSV 268

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQ 190
           +  D+D+FK+ ND +GHP GD+V+  + D +         V GR GGEEF     G+   
Sbjct: 269 ILIDVDFFKKYNDTYGHPAGDEVLRRIGDIMQRATARAGEVAGRYGGEEFILVLPGARAP 328

Query: 191 EAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVA 247
           EA   A  L+ ++    I + +S  S  I+IS G+      E +    ++ RAD ALY A
Sbjct: 329 EALKTAERLKLLVHEENIPHGASEVSDRISISQGVLSIMPDEEVDPGVLVDRADAALYEA 388

Query: 248 KKSGRNRVVC 257
           K+ GRN++  
Sbjct: 389 KREGRNKIAV 398


>gi|206578826|ref|YP_002240676.1| diguanylate cyclase [Klebsiella pneumoniae 342]
 gi|288937375|ref|YP_003441434.1| diguanylate cyclase [Klebsiella variicola At-22]
 gi|206567884|gb|ACI09660.1| diguanylate cyclase [Klebsiella pneumoniae 342]
 gi|288892084|gb|ADC60402.1| diguanylate cyclase [Klebsiella variicola At-22]
          Length = 464

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 84/173 (48%), Gaps = 8/173 (4%)

Query: 89  ILKELFISYNRISQLSR-IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           I  +L + ++ +SQ+    D L+ LLN       L         Y+  L++   DID+FK
Sbjct: 283 ISSQLGVLFSSLSQMQNGKDALTSLLNRRYLPVVLKHEVTLAIEYDLPLTVAIIDIDFFK 342

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH VGD+ I  ++D L     +  ++ R GGEEF    + +   EA  L   LR
Sbjct: 343 EINDKWGHMVGDRAIKHVADLLSDNIRSSDYLFRYGGEEFLLVLVETRAAEAFPLLERLR 402

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           K I     N+     I IT S G A        + ++  AD ALY AK+ GRN
Sbjct: 403 KKIGQLAFNVGGDTQIPITASIGFAAHTGHPDYNLLLRDADNALYAAKREGRN 455


>gi|332306393|ref|YP_004434244.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173722|gb|AEE22976.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 350

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 9/176 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF------ISSLGS-YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D L+GL N          +S+L + +N  L++V FD+D FK IND  GH VG
Sbjct: 174 RLLSLAGTDPLTGLANRMKLNEGFQQLSALATRHNAPLTLVLFDLDLFKTINDVHGHSVG 233

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D  +  +++ L         + R GGEEFA   + +  +E       LRK +  +  + +
Sbjct: 234 DDALRHVANFLQTNTRKTDLLARFGGEEFALLMVATDLEEGYGQIEALRKRLMITPFS-T 292

Query: 212 SGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           +   I IT+SAG++   C  + ++ +I +AD+ LY AK++GRN+V+      N   
Sbjct: 293 AKCDIQITLSAGLSTYGCDGKSLNQLIAKADKRLYHAKENGRNQVIAHDPDTNQKA 348


>gi|317406315|gb|EFV86552.1| signaling/response regulator protein [Achromobacter xylosoxidans
           C54]
          Length = 351

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           ++L  S   + +L+  D L+GL N   F   L +          ++S++  D+D+FK  N
Sbjct: 157 QQLLESNMELRRLTNSDGLTGLGNRRYFDEYLNAEWLRARRDGREISMLMIDVDHFKSYN 216

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+ +  +++ +            R GGEEFA    G+    A + A  LR+ 
Sbjct: 217 DTYGHIAGDEALKRVANTIFASCDRSTDLAARFGGEEFALVLPGTPAGSARLAAEKLRRA 276

Query: 203 IENSQI---NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +E  QI   +   GP + ++I    A     +P + +I  AD+ LY AK+ GRNRVV
Sbjct: 277 VEAMQIPQKDNGGGPWLTVSIGTATAVPVVDQPCTDLIQIADRGLYQAKRQGRNRVV 333


>gi|222149934|ref|YP_002550891.1| two component response regulator [Agrobacterium vitis S4]
 gi|221736916|gb|ACM37879.1| two component response regulator [Agrobacterium vitis S4]
          Length = 296

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 19/242 (7%)

Query: 32  SIFFSIFIATVIFIANIFL-FYIGLTPFYGLEYILV---ENLSLVIISITISLLLGYISG 87
           SI   + I+T+   A   L  +  + P   L + +    +  + V I++     +G ++ 
Sbjct: 49  SILLVLLISTLAGTAGCLLSLWRIIQPLRQLNHSIARYRQEGAPVTIAVKTKDEIGTVAQ 108

Query: 88  SI---LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDI 136
           ++   + EL  S   ++  +  D L+GL N   FI + G+          + + ++ FD+
Sbjct: 109 AVSALVTELDCSLKTLTLQANTDPLTGLANRR-FILARGTEALDETRRSGDPMCLLLFDL 167

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK IND FGH  GDK +   +  +          GR+GGEEF     G++  +A  +A
Sbjct: 168 DHFKGINDAFGHETGDKALIAAAQTIRSNLRPNDLAGRIGGEEFCVLLPGTNLVQAQAIA 227

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             LR  +EN  I +       IT S G+A+   H       +   D ALY AK+ GRNR+
Sbjct: 228 ERLRTCLEN--ICLEPLAPGRITASFGLAQSADHFSTFQKFMAATDMALYRAKQHGRNRI 285

Query: 256 VC 257
            C
Sbjct: 286 HC 287


>gi|188580802|ref|YP_001924247.1| diguanylate cyclase [Methylobacterium populi BJ001]
 gi|179344300|gb|ACB79712.1| diguanylate cyclase [Methylobacterium populi BJ001]
          Length = 416

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 7/163 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++S+L+  D L+GL N     +++G  +      + +I+  DID+FK IND +GH  GD 
Sbjct: 215 KLSRLAETDPLTGLANRRGLFTAIGRRSGPGGALRCAILLADIDHFKSINDTYGHDGGDA 274

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +   +++L  V      + R GGEEF      +    A  +A  LR+       ++ +G
Sbjct: 275 ALIGFAERLRSVMRKDDIIARWGGEEFLVVLDQADAAAATAVAERLRRTAAGQPFSV-NG 333

Query: 214 PSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++ +T S G++     +E I   + RAD ALY AKK GRNRV
Sbjct: 334 AALTVTASIGVSIVAAGEERIDAALSRADAALYAAKKGGRNRV 376


>gi|152976454|ref|YP_001375971.1| diguanylate cyclase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025206|gb|ABS22976.1| diguanylate cyclase [Bacillus cytotoxicus NVH 391-98]
          Length = 431

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ ID L+ + N   F         S     +K++++FFDID FK++ND +GH 
Sbjct: 262 YQEQERLATIDTLTEIYNRLKFQQILEEVWKSAQRNRQKIALIFFDIDDFKKVNDTYGHD 321

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +     +     R GGEEF      ++E+EA  +A  LR  IE  Q +
Sbjct: 322 FGDLALIQLAELVKTKIDSKYTFARWGGEEFVILVTDTTEKEAFQVAESLRFFIETKQFS 381

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             S     +T S G+A          +I RAD ALY AK++G+N+V
Sbjct: 382 SISK----LTASFGVALYEQGITKEELIQRADIALYEAKQNGKNQV 423


>gi|307592366|ref|YP_003899957.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
 gi|306986011|gb|ADN17891.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
          Length = 813

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/131 (32%), Positives = 73/131 (55%), Gaps = 1/131 (0%)

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           +   +   D+D+FK++ND +GH  GD V+++    L   F +   +GR GGEEF    +G
Sbjct: 674 QPFCLAILDLDHFKRVNDQYGHETGDLVLSYFGQLLNKSFRSQDIIGRWGGEEFVVGMIG 733

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALY 245
            ++ E +    ++ + + N     ++G S  +T S GIA+ R +   +  +   ADQALY
Sbjct: 734 MTKLEGSKRLENILEKLNNYLFVAANGTSFRVTFSGGIAQLRENGNELQMLYTAADQALY 793

Query: 246 VAKKSGRNRVV 256
            AK++GR R++
Sbjct: 794 QAKEAGRRRII 804


>gi|145298274|ref|YP_001141115.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851046|gb|ABO89367.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 379

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 12/171 (7%)

Query: 98  NRISQLSR---IDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFG 147
           N + QL R    D L+G++N    +  L          +   +++  D+D FK+IND FG
Sbjct: 191 NMLLQLYRESTTDELTGMMNRRLLMKQLDKARVTMDHKHSPFAVMLLDLDRFKRINDTFG 250

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENS 206
           H  GD V+  ++  L       M +GR GGEEFA       E  +A  +A  LR  +E  
Sbjct: 251 HLAGDAVLKEVAATLAEQLEPGMVLGRYGGEEFAILLPRCGELAQAKRVAERLRVAVEAR 310

Query: 207 QI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            + + +S   + +T+S G+      E +  ++ RAD+ LY+AK +GRN VV
Sbjct: 311 LVKSPTSDELLEVTVSIGLTLAQRGESVEDLLNRADECLYMAKMAGRNCVV 361


>gi|167033489|ref|YP_001668720.1| diguanylate cyclase [Pseudomonas putida GB-1]
 gi|166859977|gb|ABY98384.1| diguanylate cyclase [Pseudomonas putida GB-1]
          Length = 363

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 118/228 (51%), Gaps = 22/228 (9%)

Query: 44  FIANIFLFYIGLTPFY--GLEYILVENLSLVIISITISLLLGY----ISGSILKELFISY 97
           F + + + ++ L PFY   +E   +E   LV  ++ +S L+ Y       + L   ++S 
Sbjct: 139 FFSAMVITWVMLNPFYHTRIEPDALEGAMLVSYAVFLSGLITYSYLQTRKAKLHNFYLSR 198

Query: 98  NRISQLSRIDCLSGLLNHSAFISS------LGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
             + Q + +D L+ + N  +F++       L +  + L++V  DID FK++ND FGH +G
Sbjct: 199 VLLEQ-AYVDALTEIPNRRSFMAKTEQQLKLATPGQYLAMV--DIDNFKKVNDRFGHDIG 255

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++  +        F  RLGGEEFA    G  +Q A      +  ++   + +  
Sbjct: 256 DEVLRRVALHIKAAMVDSEF-ARLGGEEFAIFLEGLDQQGA---EQQMEALVRRVREDAG 311

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + P   +TIS G+A+    + ++  + +ADQALY AK +G++R V ++
Sbjct: 312 THP---VTISIGLAQVSAGDTLTMALIKADQALYEAKHTGKDRFVLWT 356


>gi|159898911|ref|YP_001545158.1| TPR repeat-containing diguanylate cyclase and serine/threonine
           protein kinase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159891950|gb|ABX05030.1| diguanylate cyclase and serine/threonine protein kinase with TPR
           repeats [Herpetosiphon aurantiacus ATCC 23779]
          Length = 600

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 89/168 (52%), Gaps = 11/168 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++++ ++ D L+ +LN       +        +  +  + + FDID+FK IND++GH  G
Sbjct: 424 QLAEWAKTDSLTEILNRRGLYEQIDLALQHQQTDAQGWAWIMFDIDFFKAINDSYGHDSG 483

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++ +  +V       GR GGEEF      +S QEA ++A  LR  I N+   + 
Sbjct: 484 DEVLRGIAQRARLVLRHSDVFGRYGGEEFLVFLPHTSMQEAIVIAERLRTAIANTPY-VV 542

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              ++++TIS GIA     +    +   ADQALY +K +GRN   C++
Sbjct: 543 KQTAVNVTISLGIAWTEQVDDPERLTQLADQALYRSKAAGRN---CYT 587


>gi|91777942|ref|YP_553150.1| diguanylate cyclase [Burkholderia xenovorans LB400]
 gi|91690602|gb|ABE33800.1| Putative diguanylate cyclase (GGDEF domain) [Burkholderia
           xenovorans LB400]
          Length = 604

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 11/178 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDN 145
           L      +  L+  D L+GL N   F+  L +         E+L+++F D+D FKQIND 
Sbjct: 399 LHAKQRELVHLATHDVLTGLPNRVLFMEKLENAIDEAMRRQERLAVLFVDLDRFKQINDQ 458

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIE 204
           FGH VGDKV+A ++ +L  V  +   V RLGG+EF     G    EAA  +A+ +   + 
Sbjct: 459 FGHSVGDKVLATVAHRLKQVLWSEDVVARLGGDEFIVLIEGPRSGEAAPAIASRIMATL- 517

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261
           N ++ +  G S+ +  S GI++       +  ++  AD A+Y AK  GR   + + D+
Sbjct: 518 NEEVRV-DGQSMTVGASIGISQFPEDSGTAEELLLNADAAMYAAKSGGRCAYMRYHDV 574


>gi|158422828|ref|YP_001524120.1| diguanylate cyclase [Azorhizobium caulinodans ORS 571]
 gi|158329717|dbj|BAF87202.1| diguanylate cyclase [Azorhizobium caulinodans ORS 571]
          Length = 402

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 8/171 (4%)

Query: 93  LFISYNRISQLSRIDCLSG----LLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           +F+  +R++    +  LS     L+  SA + S  +    +S++  D+D+FK IND FGH
Sbjct: 208 MFMVLDRMASCDELTELSNRRSLLMGASALLRSALASGRPVSVLLVDLDHFKSINDRFGH 267

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+V+   +     +      VGR GGEEF      +    A ++A  LR+ + +   
Sbjct: 268 RTGDQVLRAFAQVARKLLRRGDLVGRYGGEEFCLVLKDAGSDVACVMAERLRRQVMDDLR 327

Query: 209 NISSGPSIHITISAGIAERCHKEPISTI---IYRADQALYVAKKSGRNRVV 256
            +  G ++  T++ G+A     + ++ I   I  AD ALY AK  GRNRVV
Sbjct: 328 EV-EGHAVEATVAIGVASLEAGQRVAGIDRMIDAADHALYAAKDGGRNRVV 377


>gi|167898437|ref|ZP_02485838.1| putative transmembrane transcriptional sensor regulator
           [Burkholderia pseudomallei 7894]
 gi|167906789|ref|ZP_02493994.1| putative transmembrane transcriptional sensor regulator
           [Burkholderia pseudomallei NCTC 13177]
 gi|167915143|ref|ZP_02502234.1| putative transmembrane transcriptional sensor regulator
           [Burkholderia pseudomallei 112]
 gi|167922980|ref|ZP_02510071.1| putative transmembrane transcriptional sensor regulator
           [Burkholderia pseudomallei BCC215]
 gi|254183668|ref|ZP_04890260.1| diguanylate cyclase [Burkholderia pseudomallei 1655]
 gi|184214201|gb|EDU11244.1| diguanylate cyclase [Burkholderia pseudomallei 1655]
          Length = 489

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 16/171 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++L+  D L+GL N  A   +L          +  L+I+F DID+FK+ ND +GH VGD
Sbjct: 316 LARLAGTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGD 375

Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +V+A +S    Q     G    V R GGEEF      +    A ++A  +R  +    I 
Sbjct: 376 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 433

Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                   +T+S G+A    +      I+ I+  ADQALY AK  GRNRVV
Sbjct: 434 HEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAADQALYQAKADGRNRVV 484


>gi|53722321|ref|YP_111306.1| regulatory protein [Burkholderia pseudomallei K96243]
 gi|124381509|ref|YP_001024075.1| GGDEF domain-containing protein [Burkholderia mallei NCTC 10229]
 gi|167003134|ref|ZP_02268924.1| putative diguanylate cyclase [Burkholderia mallei PRL-20]
 gi|167723858|ref|ZP_02407094.1| GGDEF domain protein [Burkholderia pseudomallei DM98]
 gi|167742825|ref|ZP_02415599.1| GGDEF domain protein [Burkholderia pseudomallei 14]
 gi|167820003|ref|ZP_02451683.1| GGDEF domain protein [Burkholderia pseudomallei 91]
 gi|167849835|ref|ZP_02475343.1| GGDEF domain protein [Burkholderia pseudomallei B7210]
 gi|254193579|ref|ZP_04900013.1| diguanylate cyclase [Burkholderia pseudomallei S13]
 gi|254356715|ref|ZP_04972990.1| putative diguanylate cyclase [Burkholderia mallei 2002721280]
 gi|52212735|emb|CAH38767.1| putative regulatory protein [Burkholderia pseudomallei K96243]
 gi|124289529|gb|ABM98798.1| diguanylate cyclase (GGDEF) domain protein [Burkholderia mallei
           NCTC 10229]
 gi|148025742|gb|EDK83865.1| putative diguanylate cyclase [Burkholderia mallei 2002721280]
 gi|169650332|gb|EDS83025.1| diguanylate cyclase [Burkholderia pseudomallei S13]
 gi|243061284|gb|EES43470.1| putative diguanylate cyclase [Burkholderia mallei PRL-20]
          Length = 489

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 16/171 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++L+  D L+GL N  A   +L          +  L+I+F DID+FK+ ND +GH VGD
Sbjct: 316 LARLAGTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGD 375

Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +V+A +S    Q     G    V R GGEEF      +    A ++A  +R  +    I 
Sbjct: 376 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 433

Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                   +T+S G+A    +      I+ I+  ADQALY AK  GRNRVV
Sbjct: 434 HEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAADQALYRAKADGRNRVV 484


>gi|310819572|ref|YP_003951930.1| FHA domain/GGDEF domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309392644|gb|ADO70103.1| FHA domain/GGDEF domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 293

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 81/159 (50%), Gaps = 11/159 (6%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N   F+  L         Y+  LS++ FDID+FK+IND  GH  GD V+  L+
Sbjct: 136 DGLTGVSNKRYFLEYLEREMGRSHRYHRALSLMIFDIDHFKKINDVHGHLAGDHVLRELA 195

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +  +        R GGEEFA        ++A + A  +RK+IE           I +T
Sbjct: 196 QSVKRLVRREQCFARYGGEEFALVMPEDGPEKARLFAEKIRKLIEERTFMFED-KEIPVT 254

Query: 220 ISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVV 256
           IS G+A+      EP +  I  +D  LY AKK+GRNRVV
Sbjct: 255 ISIGVADMTADMTEP-TQFIKVSDANLYRAKKAGRNRVV 292


>gi|261409758|ref|YP_003245999.1| diguanylate cyclase [Paenibacillus sp. Y412MC10]
 gi|261286221|gb|ACX68192.1| diguanylate cyclase [Paenibacillus sp. Y412MC10]
          Length = 370

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 103/201 (51%), Gaps = 13/201 (6%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNE 127
           V+ ++ I +L  YI+ S   +LF+   + ++   +  L  L      +S        ++E
Sbjct: 170 VLATVVIYMLTEYINTS--NKLFLQMKKNAETDYLTSLHNLRQFEQLLSERFLEAQHFSE 227

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           +L ++  DID+FKQIND +GH  GD V+  LS  L     +   V R GGEEF+     +
Sbjct: 228 RLGVLVVDIDHFKQINDTYGHAAGDVVLQQLSKVLRDHSRSFDEVSRNGGEEFSVLVPEA 287

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-----IIYRADQ 242
           +  E A +A  +R  +E+    +  G  + IT+S G A   H + I +     ++ +AD+
Sbjct: 288 TIDETAAIAERIRAAVEDHVFTLEDGAKLRITVSIGAA--VHPDTIRSKNAKELLQQADR 345

Query: 243 ALYVAKKSGRNRVVCFSDIEN 263
            LY AK+SGRNRV    +I +
Sbjct: 346 ELYRAKESGRNRVCSAPEIND 366


>gi|149185040|ref|ZP_01863357.1| putative response regulator [Erythrobacter sp. SD-21]
 gi|148831151|gb|EDL49585.1| putative response regulator [Erythrobacter sp. SD-21]
          Length = 295

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 87/177 (49%), Gaps = 12/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHS--------AFISSLGSYNEKLSIVFFDIDYFKQIN 143
           +L  S  R+++LS  D L+ L N           +  S      + +I+  DID FK+IN
Sbjct: 113 DLEQSNRRLTELSMQDPLTDLANRRWAEKAFERHYALSPAEAPGQTAILLIDIDRFKEIN 172

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH VGD+ +  +++ L     GT     R GGEEF          EA   A ++R  
Sbjct: 173 DRWGHDVGDRGLQAVAEVLRHAASGTSGLAARFGGEEFVILLRVDGPGEARRFAEEVRAS 232

Query: 203 IENSQINISSGP-SIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVV 256
           IE  +I + S P  +  T+S G+     +E   +S ++ RAD+ LY AK  GRNR V
Sbjct: 233 IERIEIEVDSPPRKLGCTVSIGVVVHAGEEKPSLSKLLKRADKVLYQAKSDGRNRSV 289


>gi|119470567|ref|ZP_01613270.1| putative two-component response regulator [Alteromonadales
           bacterium TW-7]
 gi|119446268|gb|EAW27545.1| putative two-component response regulator [Alteromonadales
           bacterium TW-7]
          Length = 299

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 8/135 (5%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGS 187
           LS++  DIDYFK+ ND +GH  GD+ +  ++  L+        F+ R GGEEFAA     
Sbjct: 166 LSVLLMDIDYFKRYNDTYGHRAGDECLKKVAQSLLAQCKRGSDFIARYGGEEFAAILPDV 225

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIH---ITISAGIA--ERCHKEPISTIIYRADQ 242
           S++EA   AN LR  +  +++NI    S++   ITIS G+A  E        +++  AD 
Sbjct: 226 SKEEAIAFANKLRNAV--NKLNIEHKTSLNAQCITISIGVATMEDGRSTSEHSLLEEADL 283

Query: 243 ALYVAKKSGRNRVVC 257
            LY AK++GRNRVV 
Sbjct: 284 GLYEAKEAGRNRVVA 298


>gi|152994324|ref|YP_001339159.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150835248|gb|ABR69224.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 362

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 83/158 (52%), Gaps = 6/158 (3%)

Query: 107 DCLSGLLNHSAFISSLGSYN--EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+ + N       LG  N  +K++++  D+D+FKQIND  GH +GD+V+  ++ +L  
Sbjct: 204 DYLTDIYNRRGLDLWLGQLNHDDKVAVLLIDVDHFKQINDRHGHSIGDRVLVEVASRLRT 263

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           ++     + R GGEEFA   +         + +    + +++   +       IT+S G+
Sbjct: 264 IYFEKHTIARWGGEEFAVVLVNPKTNTLPFIGS----MFQHALGTLPYKSVGKITVSVGV 319

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +   H +    +I +AD+ALY AK +GR++ V ++ I 
Sbjct: 320 SSIAHHDNFLDLINQADKALYTAKDNGRDQAVMYNRIH 357


>gi|163849434|ref|YP_001637478.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222527438|ref|YP_002571909.1| diguanylate cyclase with PAS/PAC sensor [Chloroflexus sp. Y-400-fl]
 gi|163670723|gb|ABY37089.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222451317|gb|ACM55583.1| diguanylate cyclase with PAS/PAC sensor [Chloroflexus sp. Y-400-fl]
          Length = 721

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 106/224 (47%), Gaps = 39/224 (17%)

Query: 59  YGLEYILVENLS----LVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLL 113
           YGL +I  E L     +V+   TI L L  +   + L+E  I          ID L+GL 
Sbjct: 509 YGLLHIAGEELPRSELIVMTGDTIKLALSNLELRATLREQAI----------IDPLTGLY 558

Query: 114 NHSAFISSLG-----SYNEKL--SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N     SSL      +  E+L  +I   DID+FKQ ND +GH  GD     L  +L V+F
Sbjct: 559 NRRYLESSLPRELHRAQREQLPLTIAMIDIDHFKQFNDTYGHDAGD----VLLRELAVIF 614

Query: 167 GTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS---GPSIHIT 219
              +       R GGEEF     G + + A      L   ++  +I  ++   GP   +T
Sbjct: 615 REHLRQSDLACRYGGEEFVLILPGVNRETARTRLQQLANTVQQRRITFANQLIGP---VT 671

Query: 220 ISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           IS G    ER     I+T+I  AD ALY AK+ GRNRV+ F+D+
Sbjct: 672 ISIGYITYERGEYH-ITTLIQSADAALYAAKRGGRNRVIDFADL 714


>gi|238562057|ref|ZP_00441046.2| diguanylate cyclase [Burkholderia mallei GB8 horse 4]
 gi|238523405|gb|EEP86844.1| diguanylate cyclase [Burkholderia mallei GB8 horse 4]
          Length = 499

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 16/171 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++L+  D L+GL N  A   +L          +  L+I+F DID+FK+ ND +GH VGD
Sbjct: 326 LARLAGTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGD 385

Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +V+A +S    Q     G    V R GGEEF      +    A ++A  +R  +    I 
Sbjct: 386 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 443

Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                   +T+S G+A    +      I+ I+  ADQALY AK  GRNRVV
Sbjct: 444 HEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAADQALYRAKADGRNRVV 494


>gi|152996275|ref|YP_001341110.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150837199|gb|ABR71175.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 545

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 65/186 (34%), Positives = 93/186 (50%), Gaps = 17/186 (9%)

Query: 84  YISGSILKELFIS-----YNRISQLSR---IDCLSGLLNHSAF---ISSLGSYNEKLSIV 132
           Y+    LK+  +S     +N+I +L R    D L+G  N  AF   +  L       S++
Sbjct: 362 YVESLGLKKAMLSGVKLIHNQIGELKRDAETDPLTGANNRRAFEFKLKQLALLEVPFSVL 421

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DIDYFK+INDN+GH VGD V+   +  L         V R GGEEF      +S ++A
Sbjct: 422 ALDIDYFKRINDNYGHSVGDDVLKQQTQILNRFCRDGDMVTRTGGEEFILLLKETSIEDA 481

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKS 250
            ++A  LR  I     ++      +IT+S GIA     + IS    +  AD+ALY AK+ 
Sbjct: 482 FLVAERLRIAISEETFDVVG----NITVSIGIAAWAISDGISIEKTLSLADKALYQAKEQ 537

Query: 251 GRNRVV 256
           GRNR +
Sbjct: 538 GRNRCI 543


>gi|118588446|ref|ZP_01545855.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Stappia
           aggregata IAM 12614]
 gi|118439152|gb|EAV45784.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Stappia
           aggregata IAM 12614]
          Length = 723

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 89/166 (53%), Gaps = 12/166 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGD 152
           + +++ ID L+ +LN  AF+    +  ++        + V  DID FKQIND +GH  GD
Sbjct: 548 LERVASIDDLTQILNRRAFLERANTEVQRFRRTKRPFTAVMMDIDKFKQINDLYGHATGD 607

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINIS 211
           +V+   +D +     +    GR+GGEEF      +  ++A ++   LR +II   Q++I 
Sbjct: 608 EVLRKFADTVSSALRSVDIFGRVGGEEFCMILHNADLEDAMLVCERLRQRIIAECQLDIV 667

Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
                 +T S G+A    ++   ST++ +AD ALY AK +GRN+ V
Sbjct: 668 KQT---VTCSMGLAAVAREDLEFSTLMQKADTALYEAKSTGRNKCV 710


>gi|331682933|ref|ZP_08383541.1| putative GGDEF domain protein [Escherichia coli H299]
 gi|331079754|gb|EGI50944.1| putative GGDEF domain protein [Escherichia coli H299]
          Length = 349

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 5/162 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
           NR+  L+  D L+G+ N  A  S L    +     +++  D+D+FK+ ND +GHP GD+ 
Sbjct: 185 NRLDALAHRDPLTGIANRRAMNSILHDAIDNGGSFALIMLDVDFFKRYNDTYGHPAGDRC 244

Query: 155 IAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212
           +  ++D L      +   V R GGEEFA     ++  EA  +A  +++ ++ + I + +S
Sbjct: 245 LIQVADALQRSTRQSEDVVVRYGGEEFAIILFNATLPEAETVAARVKQELKLAAIPHQAS 304

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +  +T+S GI      +    II  AD ALY AK+SGRNR
Sbjct: 305 AVNAFVTVSQGITCSAPAKTAEQIISDADAALYRAKESGRNR 346


>gi|255262458|ref|ZP_05341800.1| response regulator receiver modulated diguanylate cyclase
           [Thalassiobium sp. R2A62]
 gi|255104793|gb|EET47467.1| response regulator receiver modulated diguanylate cyclase
           [Thalassiobium sp. R2A62]
          Length = 459

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 12/161 (7%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N    +  L    E+        +++  DID+FK +ND +GH  GD V+  ++
Sbjct: 292 DPLTGLFNRRYAMPHLERIAERAKESGREFAVMMLDIDHFKSVNDKYGHRAGDAVLIEVA 351

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHI 218
            +L         + R+GGEEF      ++++EA I A  LR +++++  +I   G  + +
Sbjct: 352 RRLRNNLRLIDLIARVGGEEFLVTLPETTQEEAEIAAQRLRSVVDDTPFHIPQLGMPVPV 411

Query: 219 TISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T+S G+A    E     P   +  RAD ALY AK +GRN V
Sbjct: 412 TLSIGVAMSGDEALLTPPFDHLFGRADAALYSAKNAGRNTV 452


>gi|206580868|ref|YP_002238397.1| sensory box-containing diguanylate cyclase [Klebsiella pneumoniae
           342]
 gi|288935373|ref|YP_003439432.1| diguanylate cyclase with PAS/PAC sensor [Klebsiella variicola
           At-22]
 gi|206569926|gb|ACI11702.1| sensory box-containing diguanylate cyclase [Klebsiella pneumoniae
           342]
 gi|288890082|gb|ADC58400.1| diguanylate cyclase with PAS/PAC sensor [Klebsiella variicola
           At-22]
          Length = 418

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 81/161 (50%), Gaps = 12/161 (7%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GLLN   F   + +     +   ++  DID+FK IND  GH  GD+V+  +S  L 
Sbjct: 256 DPLTGLLNRREFYRLVEAPSFIAQGFCLLLIDIDHFKSINDIHGHQKGDEVLLVISRILE 315

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   + R GGEEF      S    A ILA  +R+ +   Q       ++ +T+S G
Sbjct: 316 TSVDREDKIYRWGGEEFLLFLPHSPIARALILAEGIRQAVSEYQ-------TLSVTVSIG 368

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRV--VCFSDIE 262
           +AE    E I  +  R D+ALYVAK  GRNRV  + F ++E
Sbjct: 369 VAEHHDGEAIDQLFSRVDKALYVAKNGGRNRVSRLPFENVE 409


>gi|121597126|ref|YP_990000.1| GGDEF domain-containing protein [Burkholderia mallei SAVP1]
 gi|126446618|ref|YP_001078531.1| GGDEF domain-containing protein [Burkholderia mallei NCTC 10247]
 gi|126456805|ref|YP_001075789.1| diguanylate cyclase [Burkholderia pseudomallei 1106a]
 gi|242312649|ref|ZP_04811666.1| diguanylate cyclase [Burkholderia pseudomallei 1106b]
 gi|121224924|gb|ABM48455.1| GGDEF domain protein [Burkholderia mallei SAVP1]
 gi|126230573|gb|ABN93986.1| diguanylate cyclase [Burkholderia pseudomallei 1106a]
 gi|126239472|gb|ABO02584.1| diguanylate cyclase (GGDEF) domain protein [Burkholderia mallei
           NCTC 10247]
 gi|242135888|gb|EES22291.1| diguanylate cyclase [Burkholderia pseudomallei 1106b]
          Length = 499

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 16/171 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++L+  D L+GL N  A   +L          +  L+I+F DID+FK+ ND +GH VGD
Sbjct: 326 LARLAGTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGD 385

Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +V+A +S    Q     G    V R GGEEF      +    A ++A  +R  +    I 
Sbjct: 386 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 443

Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                   +T+S G+A    +      I+ I+  ADQALY AK  GRNRVV
Sbjct: 444 HEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAADQALYRAKADGRNRVV 494


>gi|76818658|ref|YP_335474.1| GGDEF domain-containing protein [Burkholderia pseudomallei 1710b]
 gi|76583131|gb|ABA52605.1| GGDEF domain protein [Burkholderia pseudomallei 1710b]
          Length = 484

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 16/171 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++L+  D L+GL N  A   +L          +  L+I+F DID+FK+ ND +GH VGD
Sbjct: 311 LARLAGTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGD 370

Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +V+A +S    Q     G    V R GGEEF      +    A ++A  +R  +    I 
Sbjct: 371 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 428

Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                   +T+S G+A    +      I+ I+  ADQALY AK  GRNRVV
Sbjct: 429 HEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAADQALYRAKADGRNRVV 479


>gi|89093269|ref|ZP_01166219.1| Putative diguanylate cyclase (GGDEF domain) [Oceanospirillum sp.
           MED92]
 gi|89082565|gb|EAR61787.1| Putative diguanylate cyclase (GGDEF domain) [Oceanospirillum sp.
           MED92]
          Length = 577

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 84/171 (49%), Gaps = 14/171 (8%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            QL+  D L+GL N   F   +         ++ +L ++  DID+FK IND  GH  GD 
Sbjct: 407 QQLADRDQLTGLYNRRGFDKVMEPVFGNAYRHHRELCLLVLDIDHFKAINDRHGHGYGDL 466

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  L+  L         + R GGEEF      ++  EA  LA  L + I N ++    G
Sbjct: 467 VLTDLAKVLQHELRAGDLIARWGGEEFLLLLPETNHMEAVTLAERLIRNISNREVE-GDG 525

Query: 214 PSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNRVVCFSDI 261
              H T+S GIAE   K PI     ++  AD+ LY AK++GRN+  C+  +
Sbjct: 526 VQEHYTVSIGIAEL--KPPIVSFKQLLVEADKHLYRAKETGRNK-ACYQQV 573


>gi|323705617|ref|ZP_08117191.1| diguanylate cyclase with GAF sensor [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535094|gb|EGB24871.1| diguanylate cyclase with GAF sensor [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 554

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 10/171 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y  IS+ S  D L+   N   F       I+        +S++  D+D FKQIND +GH 
Sbjct: 383 YFEISKRSITDPLTKTYNRRFFDQILHDSIAKSSIEKTPVSLIMLDVDRFKQINDTYGHM 442

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD V+  ++ ++         V R GGEEF+      + ++A ++A  +R  + +  I 
Sbjct: 443 VGDAVLREIASRIKSCVRNNDIVARYGGEEFSVILPNLTAEQACVIAERIRYEVSSKPIK 502

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA-KKSGRNRVVCF 258
             +G  I+IT+SAG+A+  +K E    +I  AD+ALY   K  GR+RV  +
Sbjct: 503 TDAG-DINITVSAGVADFPNKAESAEKLISHADRALYAGCKTKGRDRVAVY 552


>gi|303242086|ref|ZP_07328577.1| diguanylate cyclase [Acetivibrio cellulolyticus CD2]
 gi|302590380|gb|EFL60137.1| diguanylate cyclase [Acetivibrio cellulolyticus CD2]
          Length = 376

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 9/174 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL------GSY-NEKLSIVFFDIDYFKQINDNFGHP 149
           + R  +L+R D L+GL N   F   L        Y  + L+++ FDID FK+ ND +GH 
Sbjct: 186 HKREFKLARTDKLTGLANRHYFDQKLEEEALYADYARQPLNVLMFDIDNFKKFNDTYGHI 245

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GDK+++   D ++          R GGEEF         +    + + +R  +E   +N
Sbjct: 246 WGDKLLSMFGDIVMQNIRKTDIPVRYGGEEFIVLIGDLDLEMVKSIGDRIRGQLEKQNLN 305

Query: 210 I-SSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           + S      +T+S GIA+   H + I  +I  AD+ALY AK+ G+N VV + +I
Sbjct: 306 MGSEHTKCKVTVSCGIAQYPTHSKDIKEVIDFADKALYYAKEIGKNIVVSYDEI 359


>gi|290512759|ref|ZP_06552125.1| diguanylate cyclase [Klebsiella sp. 1_1_55]
 gi|289775100|gb|EFD83102.1| diguanylate cyclase [Klebsiella sp. 1_1_55]
          Length = 464

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 84/173 (48%), Gaps = 8/173 (4%)

Query: 89  ILKELFISYNRISQLSR-IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           I  +L + ++ +SQ+    D L+ LLN       L         Y+  L++   DID+FK
Sbjct: 283 ISSQLGVLFSSLSQMQNGKDALTSLLNRRYLPVVLKHEVTLAIEYDLPLTVAIIDIDFFK 342

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH VGD+ I  ++D L     +  ++ R GGEEF    + +   EA  L   LR
Sbjct: 343 EINDKWGHMVGDRAIKHVADLLSDNIRSSDYLFRYGGEEFLLVLVETRAAEAFPLLERLR 402

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           K I     N+     I IT S G A        + ++  AD ALY AK+ GRN
Sbjct: 403 KKIGQLAFNVGGDTQIPITASIGFAAHTGHPDYNLLLRDADNALYAAKREGRN 455


>gi|46579353|ref|YP_010161.1| GGDEF domain-containing protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603088|ref|YP_967488.1| diguanylate cyclase [Desulfovibrio vulgaris DP4]
 gi|46448767|gb|AAS95420.1| GGDEF domain protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|120563317|gb|ABM29061.1| diguanylate cyclase [Desulfovibrio vulgaris DP4]
 gi|311233179|gb|ADP86033.1| diguanylate cyclase [Desulfovibrio vulgaris RCH1]
          Length = 243

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 89/166 (53%), Gaps = 10/166 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFFDIDYFKQINDNFGHPVG 151
           R+ +LS +D L+GL N  +F ++L      +  +   ++++  D+D+FK +ND +GH  G
Sbjct: 75  RLERLSLVDPLTGLYNRRSFETALEKEMARWRRREAPVALLMLDLDHFKLVNDTWGHQAG 134

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  L+  L           R+GGEEFA      +  EA   A  LR ++     +I 
Sbjct: 135 DRVLQTLARLLSSTVRIEDLPARVGGEEFAVIMPEVTGDEAYQAAERLRLVVAGHLFDIG 194

Query: 212 SGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              SI + +S G+A  E  +    +T++  AD+ALY AK+ GR+RV
Sbjct: 195 V-ESIEVRVSIGVACTEMQNVADGATLVRLADEALYRAKQRGRDRV 239


>gi|326797145|ref|YP_004314965.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
 gi|326547909|gb|ADZ93129.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
          Length = 643

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 89/175 (50%), Gaps = 12/175 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           KE+     ++ +LSR D L+ LLN   F+ +L      NE  S++F D+D FK IND  G
Sbjct: 218 KEIEDRTKQLDRLSRFDSLTNLLNRYGFLKALKRVQIENEHYSLMFMDLDGFKSINDRLG 277

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS--EQEAAILANDLRKIIEN 205
           H VGD ++   + +L+        VGR GG+EF    L     EQ+A  L  D+ +    
Sbjct: 278 HAVGDDLLQQAAARLMSSLNERDLVGRWGGDEFLVLTLDREGLEQKANGLIEDISRPYVI 337

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +++N+S G +I      G+A    H      +I  AD A+Y  KK+ + +V  FS
Sbjct: 338 NRMNLSIGVTI------GVAHYPEHGRSYDLLIQNADIAMYQQKKAEKGQVGFFS 386


>gi|293606786|ref|ZP_06689137.1| sensory box/GGDEF domain protein [Achromobacter piechaudii ATCC
           43553]
 gi|292814790|gb|EFF73920.1| sensory box/GGDEF domain protein [Achromobacter piechaudii ATCC
           43553]
          Length = 561

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 10/165 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPVG 151
           + +L+  D L+ L N   F+S + +   ++        +++  D+D+FK IND +GH +G
Sbjct: 392 LRELAATDALTTLPNRRHFMSRIAAELARIKGQGGLGSAVLMCDLDHFKHINDTWGHAIG 451

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+   ++ L         VGR+GGEEFA     +  + A + A ++++ I ++  + S
Sbjct: 452 DGVLQHFANTLRAQLREIDLVGRIGGEEFAVVLPDTDIERAHLFARNVQRQIADAPYS-S 510

Query: 212 SGPSIHITISAGIAERCHKEPISTI-IYRADQALYVAKKSGRNRV 255
            G  I +T+S GI+    K+  + I + R+D+ALY AK+ GRNR+
Sbjct: 511 GGRHIPLTVSIGISALHGKDEDAEIALSRSDRALYYAKRRGRNRI 555


>gi|289642348|ref|ZP_06474496.1| diguanylate cyclase [Frankia symbiont of Datisca glomerata]
 gi|289507880|gb|EFD28831.1| diguanylate cyclase [Frankia symbiont of Datisca glomerata]
          Length = 413

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 77/139 (55%), Gaps = 1/139 (0%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L++   D+D+FK IND++GHP GD+V+A +S +L         + R GGEEFA  A    
Sbjct: 243 LALFIIDVDHFKAINDHYGHPAGDRVLAEISVRLRGTTRLGDVLARYGGEEFALLAPNVH 302

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVA 247
             E +++A  +R  +  S I +++  S+  T+S G  A   H      ++  AD+ALY A
Sbjct: 303 LDELSVVAERMRTRVAASPITVNADISLFATVSVGACAFPVHVSDQVELVGMADRALYRA 362

Query: 248 KKSGRNRVVCFSDIENNTC 266
           K  GR+R V + D+ + T 
Sbjct: 363 KALGRDRTVVWDDVASATA 381


>gi|71280966|ref|YP_269111.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71146706|gb|AAZ27179.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 415

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 16/165 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----------IVFFDIDYFKQINDNFGHP 149
           + +L+  D L+G+ N  AF   L   NE+LS          ++  D+D+FK IND +GH 
Sbjct: 242 LEKLAYTDSLTGVANRCAF---LQVSNEELSRSRRLSYDVCVMMLDLDHFKVINDTYGHD 298

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GDKV+  +S+ +         +GR+GGEEFA  A G  +     LA+ L++ I  + ++
Sbjct: 299 AGDKVLKQVSEAMNNCLRKEDTLGRIGGEEFAIIAPGVDKGGMHKLASRLQQSI--ALLD 356

Query: 210 ISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            S  P + +IT+S G  +  + E     + RAD+ LY AK SGRN
Sbjct: 357 FSFLPENKNITVSIGYTKVSNDEDFKEALKRADKYLYSAKNSGRN 401


>gi|330501427|ref|YP_004378296.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas mendocina NK-01]
 gi|328915713|gb|AEB56544.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas mendocina NK-01]
          Length = 411

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 13/164 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + + ++ D L+GL N  AF       +      + ++S+   D+D+FKQIND FGH  GD
Sbjct: 252 LKKAAQFDALTGLNNRRAFYEQGLKMLQQAQRESREVSVAMLDLDHFKQINDGFGHASGD 311

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +   +  +   F   M +GRLGGEEFA   L  +E  A  L + LR+        + +
Sbjct: 312 SALVVFARAMNNAF-PDMLLGRLGGEEFALLTLHGAEHVAQAL-DRLRRQCAGLHYTVGA 369

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            P   ++ SAG+ +    E + ++++ AD  LY AK+ GR R V
Sbjct: 370 PP---LSFSAGLYQ-GEPEDLESLLHEADIRLYRAKQQGRARTV 409


>gi|318060875|ref|ZP_07979596.1| hypothetical protein SSA3_23223 [Streptomyces sp. SA3_actG]
 gi|318075938|ref|ZP_07983270.1| hypothetical protein SSA3_04305 [Streptomyces sp. SA3_actF]
          Length = 210

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 21/191 (10%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNE 127
           +L  ++  + L  G+ + ++     +S       +R D L+GL    AF         +E
Sbjct: 4   TLTALTAAVPLAAGWTAHAVALRRGLSR------ARRDPLTGLWTRDAFTRKARRLLRDE 57

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA---A 184
           +  +V  D+D FKQ+ND +GH  GD ++A ++ +L    G     GRLGG+EFAA    A
Sbjct: 58  RAVVVLADVDRFKQVNDRYGHAAGDALLASVARRLAHAAGRAGVCGRLGGDEFAAVLIDA 117

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRAD 241
            G++    A+L   L +  E     +++      T+S G   R    P   +S ++ RAD
Sbjct: 118 DGTAADLLALLHGVLARPAEGQPAEVAT------TVSLGWV-RAADHPGGDLSALLARAD 170

Query: 242 QALYVAKKSGR 252
           +ALY AK++ R
Sbjct: 171 EALYQAKQADR 181


>gi|313682782|ref|YP_004060520.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM
           16994]
 gi|313155642|gb|ADR34320.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM
           16994]
          Length = 568

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 94/180 (52%), Gaps = 18/180 (10%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFD 135
           L  IS S+L+ELF+  N+       D L+G+LN   F      Y+E       + I+  D
Sbjct: 397 LNDISQSLLRELFLK-NKAYH----DPLTGVLNRQYFYDY---YDENRRNIVTMGIIMID 448

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +DYFK+IND +GH +GD+V+   ++ +         + R GGEEF      +   +   +
Sbjct: 449 LDYFKKINDVYGHSMGDEVLKRSAEAIQNSIRNDDTLIRWGGEEFIVLVNTAKNSQLISV 508

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  +R+ +  S+I I + P +  +I A +      EP  T I RAD+ALY AK +GRNR+
Sbjct: 509 SEHIRRTV--SEIVIETIPPVTASIGATLL--LEGEPFKTAIERADKALYDAKANGRNRI 564


>gi|312196611|ref|YP_004016672.1| diguanylate cyclase [Frankia sp. EuI1c]
 gi|311227947|gb|ADP80802.1| diguanylate cyclase [Frankia sp. EuI1c]
          Length = 534

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 81/157 (51%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAFISSLG----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+GL N   F+  L      + E+++++F D+D FK++ND +GH  GD V+   S +L
Sbjct: 369 DALTGLANRKLFLERLAVAGQRHGERMALLFCDLDGFKRVNDVYGHKAGDAVLRVTSARL 428

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
           +          RLGG+EFA    G+  +EA   A  +   +       S    I I++ A
Sbjct: 429 LGCIREQDLAARLGGDEFAVLLDGAGREEAGQAAGRIVGAMRRPVHVESRDYLIGISVGA 488

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +      +  +++RAD A+Y AK++G++   CF+
Sbjct: 489 AVVDPAGPTDVEALVHRADAAMYRAKRAGKS---CFA 522


>gi|288936330|ref|YP_003440389.1| diguanylate cyclase [Klebsiella variicola At-22]
 gi|288891039|gb|ADC59357.1| diguanylate cyclase [Klebsiella variicola At-22]
          Length = 379

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 89/162 (54%), Gaps = 5/162 (3%)

Query: 98  NRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            R+  ++  D L+G  N    +AF++ L      L+++  D+DYFK+ ND++GH  GD  
Sbjct: 215 QRLESIANRDALTGTANRRALNAFLAQLWEQKAPLALIMIDVDYFKRYNDHYGHQAGDDC 274

Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212
           ++ ++  L + V      V R GGEEF  +  G S   A ++A  +++ I ++ + + +S
Sbjct: 275 LSSVAQVLKMAVRAEDDLVARYGGEEFVVSLPGVSLAHATVIAERIQQKIHDAALPHEAS 334

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +  +T+S G+       P+ T+I RAD ALY AK  GRN+
Sbjct: 335 AVAAVVTVSMGVVASDGTVPMETLIARADSALYQAKNKGRNQ 376


>gi|163783179|ref|ZP_02178173.1| hypothetical protein HG1285_14184 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881513|gb|EDP75023.1| hypothetical protein HG1285_14184 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 278

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 98/185 (52%), Gaps = 24/185 (12%)

Query: 80  LLLGYISGS-ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------- 130
           +L+G I+G+ ILK L        + + ID L+GL N       L   N+KLS        
Sbjct: 105 ILVGIITGTDILKGL-------PRFALIDPLTGLENRRV----LDYLNQKLSRQKAKDLF 153

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F DID FK+IND +GH  GDKV+  +++ ++    T   V R GGEE         E+
Sbjct: 154 VLFIDIDDFKKINDTYGHVFGDKVLKKVAEAILSSVRTYDNVIRYGGEEIVVVLHRVDER 213

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           EA  +AN +R  + +  I     P + +++S GIA   ++  +   I  AD+A+Y AK+ 
Sbjct: 214 EAVEIANRIRDHVRS--IKFKEHPEVRVSVSIGIA--PYRGSLLKTIELADKAMYQAKRK 269

Query: 251 GRNRV 255
           G++RV
Sbjct: 270 GKDRV 274


>gi|117924782|ref|YP_865399.1| response regulator receiver modulated diguanylate cyclase
           [Magnetococcus sp. MC-1]
 gi|117608538|gb|ABK43993.1| response regulator receiver modulated diguanylate cyclase
           [Magnetococcus sp. MC-1]
          Length = 555

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 11/184 (5%)

Query: 86  SGSILKELFISYNRISQLSRI---DCLSGLLNHS-------AFISSLGSYNEKLSIVFFD 135
           + +++ E+ +   R+  L  +   D L+GL NH+       + I+S    N        D
Sbjct: 372 ADTLIAEVSMRAERMRTLRSLMIRDSLTGLYNHTTTKHFLDSEIASASRRNSTTCFAMID 431

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +DYFK++ND +GH +GD+V+  LS  L         VGR GGEEFA        + A  +
Sbjct: 432 LDYFKKVNDTYGHAMGDQVLVALSRLLQQRVRQSDVVGRYGGEEFAVVLTDIDLERAKAI 491

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + LR+     +   ++G     + S G+A     E    I   AD+ALY AK+ GRN+V
Sbjct: 492 LDQLREDFARVKF-FANGIEFTCSFSCGVAAFPRLETALEIGEAADKALYQAKREGRNQV 550

Query: 256 VCFS 259
           V F 
Sbjct: 551 VAFQ 554


>gi|329923455|ref|ZP_08278937.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
 gi|328941347|gb|EGG37641.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
          Length = 370

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 103/201 (51%), Gaps = 13/201 (6%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNE 127
           V+ ++ I +L  YI+ S   +LF+   + ++   +  L  L      +S        ++E
Sbjct: 170 VLATVVIYMLTEYINTS--NKLFLQMKKNAETDYLTSLHNLRQFEQLLSERFLEAQHFSE 227

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           +L ++  DID+FKQIND +GH  GD V+  LS  L     +   V R GGEEF+     +
Sbjct: 228 RLGVLVVDIDHFKQINDTYGHAAGDVVLQQLSKVLRDHSRSFDEVSRNGGEEFSVLVPEA 287

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-----IIYRADQ 242
           +  E A +A  +R  +E+    +  G  + IT+S G A   H + I +     ++ +AD+
Sbjct: 288 TIDETAAIAERIRAAVEDHVFTLEDGAKLRITVSIGAA--VHPDTIRSKNAKELLQQADR 345

Query: 243 ALYVAKKSGRNRVVCFSDIEN 263
            LY AK+SGRNRV    +I +
Sbjct: 346 ELYRAKESGRNRVCSAPEIND 366


>gi|299065300|emb|CBJ36468.1| putative diguanylate cyclase (GGDEF domain) [Ralstonia solanacearum
           CMR15]
          Length = 437

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 92/179 (51%), Gaps = 11/179 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           ++ + LF ++  + QLS  D L+G+ N S F   L              S+V  D+D+FK
Sbjct: 249 TLYRRLFEAHVSLQQLSMHDALTGIYNRSYFNDQLPRVFDEARRRGRPFSLVMIDVDHFK 308

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199
           + ND FGH  GD  +A ++  L  V      F+ R GGEEFA     +S ++A +LA   
Sbjct: 309 RYNDTFGHLKGDGCLAAIASALEGVMPRHTGFIARYGGEEFALVLPDASPRDALLLAESA 368

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
           R+ + + ++  +  PS ++TISAG A        S   ++  AD  LY AK +GRN VV
Sbjct: 369 REAVLHLRLE-APAPSRYVTISAGCATAAPGSAASLDALVAAADATLYRAKAAGRNLVV 426


>gi|296274666|ref|YP_003657297.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
 gi|296098840|gb|ADG94790.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
          Length = 308

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 10/166 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +LS  D L+ L N   F  +  +        N  +SI+  D+D FK IND +GH +GD
Sbjct: 141 LKELSSKDPLTQLYNRRYFTEAANTMQSLSIRNNHHISIIILDVDNFKNINDTYGHSIGD 200

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KVI  LS  L         V R GGEEF      +S   A  +A ++R+ +++  + +  
Sbjct: 201 KVIVSLSRILENNCRKSDIVARFGGEEFVILLYNTSLAFAQSVAENIRQNVQDYFVEVKE 260

Query: 213 GPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVV 256
                 T+S G+A+   +  + I + I RAD+ALY AK+SG+N+V+
Sbjct: 261 -EKFSFTLSLGVAQFDAQIDKDIESTINRADKALYNAKESGKNKVI 305


>gi|39996654|ref|NP_952605.1| GGDEF domain-containing protein [Geobacter sulfurreducens PCA]
 gi|39983535|gb|AAR34928.1| GGDEF domain protein [Geobacter sulfurreducens PCA]
 gi|298505667|gb|ADI84390.1| diguanylate cyclase [Geobacter sulfurreducens KN400]
          Length = 389

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 82/177 (46%), Gaps = 8/177 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDID 137
           IS S   +L     R+  ++R D L+GL NH   +  L +   +        SIV  DID
Sbjct: 204 ISDSYQSQLRELNARLELMARTDLLTGLANHWEMVMRLAAEQSRSERNGKVFSIVLADID 263

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK++ND  GH  GD+VI  ++D L           R GGEEF      +    A  +A 
Sbjct: 264 HFKKVNDTHGHQAGDRVIRGIADTLRTNIRREDICSRWGGEEFLIILPEADLPRAGAVAA 323

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            L   + N+ +    G  I +T+S G         +  +I R D ALY AK +GR+R
Sbjct: 324 KLLAKVRNTVVPW-DGRDIRVTVSIGYGTSEPGMSVDELIRRVDDALYSAKAAGRDR 379


>gi|148656082|ref|YP_001276287.1| diguanylate cyclase [Roseiflexus sp. RS-1]
 gi|148568192|gb|ABQ90337.1| diguanylate cyclase with GAF sensor [Roseiflexus sp. RS-1]
          Length = 733

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 90/172 (52%), Gaps = 17/172 (9%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHP 149
           +  +  L+  D L+GL N   F+S+     E+       L ++  D+D FK+IND+FGHP
Sbjct: 555 FEEVQYLAITDPLTGLYNRRYFLSAARRELERAHRHHSPLVVIIADLDDFKRINDDFGHP 614

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+ +   SD L     +   V R GGEEF      + E     +   +R +   SQ  
Sbjct: 615 VGDRALRAFSDLLRRELRSIDLVARYGGEEFILLLPETDENGGVQVVERVRLLW--SQTT 672

Query: 210 ISSGPSI-HITISAGIAERCHKEP-----ISTIIYRADQALYVAKKSGRNRV 255
           I++G  +  +T S G+A   + EP     I T++ RAD+AL  AK++G+NR+
Sbjct: 673 IATGQGVARMTSSFGMA--VYAEPFDGMSIDTLVARADEALLCAKQAGKNRL 722


>gi|88857357|ref|ZP_01132000.1| hypothetical protein PTD2_02316 [Pseudoalteromonas tunicata D2]
 gi|88820554|gb|EAR30366.1| hypothetical protein PTD2_02316 [Pseudoalteromonas tunicata D2]
          Length = 513

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 92/189 (48%), Gaps = 29/189 (15%)

Query: 87  GSILKELFISYNRISQL---SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136
            S+ KE  I   R+++    S  D L+ L N +AF        +S    N+ L +V  D+
Sbjct: 332 DSLEKETSIYRERLAEQKFKSLQDSLTKLPNRAAFDERFQLEFNSFKRNNKNLCLVVIDV 391

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND+FGH  GDK +  ++  L        F+ R GGEEF      +         
Sbjct: 392 DHFKRINDSFGHSAGDKTLQVIASALKKTVRNTDFIARFGGEEFIIIMPDT--------- 442

Query: 197 NDLRKII---ENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVA 247
            DL++II   E  +  I + P      S+ ITIS G  +    +    +  RAD ALY A
Sbjct: 443 -DLKQIIQPLEKIRKAIKAIPFKFKDTSVQITISIGATQFMSVDTTQEVFDRADDALYEA 501

Query: 248 KKSGRNRVV 256
           K++GR+R+V
Sbjct: 502 KRTGRDRLV 510


>gi|253559457|gb|ACT32418.1| putative diguanylate cyclase [Pseudomonas fluorescens]
          Length = 691

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 80/157 (50%), Gaps = 8/157 (5%)

Query: 106 IDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+GL N +A+   L         +   L +   D+D+FK+INDN+GH  GD+V+  +
Sbjct: 533 VDPLTGLPNRAAWSERLEHEVVQWQRHGNSLLLAMLDLDHFKRINDNYGHLAGDRVLKLI 592

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L        F+ R GGEEF      +     A LA  LR  IE    +    P + +
Sbjct: 593 ASVLRKRLRGGDFIARFGGEEFILLVPDTPLAAGAKLAEALRLAIEACPFHFKGEP-VTV 651

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T+S G+      E   +++ RADQALY AK +GRNR+
Sbjct: 652 TVSIGLTAFKPGEHSDSVLKRADQALYRAKNAGRNRI 688


>gi|217419172|ref|ZP_03450679.1| diguanylate cyclase [Burkholderia pseudomallei 576]
 gi|217398476|gb|EEC38491.1| diguanylate cyclase [Burkholderia pseudomallei 576]
          Length = 499

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 16/171 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++L+  D L+GL N  A   +L          +  L+I+F DID+FK+ ND +GH VGD
Sbjct: 326 LARLAGTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGD 385

Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +V+A +S    Q     G    V R GGEEF      +    A ++A  +R  +    I 
Sbjct: 386 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 443

Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                   +T+S G+A    +      I+ I+  ADQALY AK  GRNRVV
Sbjct: 444 HEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAADQALYQAKADGRNRVV 494


>gi|167840992|ref|ZP_02467676.1| GGDEF domain protein [Burkholderia thailandensis MSMB43]
          Length = 311

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 9/168 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ + +  D L+G+ N   F        S    Y   LS++ FD+D+FK IND FGH VG
Sbjct: 144 KLQEYANRDGLTGIANRRFFEARLRDEFSRWQRYGGNLSVLLFDLDHFKTINDRFGHVVG 203

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++ ++  V  +    GR GGEEFA     +S  EA  +A  +R+ I ++ I  +
Sbjct: 204 DNVLRMMAQRVADVVRSQDTFGRFGGEEFALLLPCTSLDEAMHVAEKIRQTIGSTPIE-A 262

Query: 212 SGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCF 258
            G  + +T S G A          T++  AD ALY AK+ GRN  V F
Sbjct: 263 EGVRVPVTASVGGAAAHAGALTHETLVNEADAALYRAKRQGRNCSVAF 310


>gi|146306873|ref|YP_001187338.1| diguanylate cyclase [Pseudomonas mendocina ymp]
 gi|145575074|gb|ABP84606.1| diguanylate cyclase [Pseudomonas mendocina ymp]
          Length = 308

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 74/130 (56%), Gaps = 1/130 (0%)

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           + LS++  DID+FK IND+ GH +GD+V+  ++  L         V R GGEEF     G
Sbjct: 177 QPLSLLMLDIDHFKVINDSHGHALGDEVLKAVAQTLKNQLRNIDMVFRYGGEEFLVILSG 236

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
           ++ + AA++   LR  +   Q  + +G  I ++IS G A     E   +++ RAD ALYV
Sbjct: 237 TNREGAALVGERLRFAVLELQC-LDAGRPIEVSISLGCASLLPGESGESLLRRADSALYV 295

Query: 247 AKKSGRNRVV 256
           AK+ GRNR+ 
Sbjct: 296 AKREGRNRLT 305


>gi|209694808|ref|YP_002262736.1| putative response regulator [Aliivibrio salmonicida LFI1238]
 gi|208008759|emb|CAQ78956.1| putative response regulator [Aliivibrio salmonicida LFI1238]
          Length = 443

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 95/177 (53%), Gaps = 21/177 (11%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQI 142
           LKE  + +   ++L+  D L+G  N +A    L   ++++       S+++ DID+FK I
Sbjct: 262 LKEKNVEF---AELAHRDSLTGARNRNAVRDWLDRMSQQVRWGKQQFSVIYIDIDFFKGI 318

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFG---TPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           ND  GH VGD +   L + ++VV G   T  F+ R GGEEF   +  +   +A   A  +
Sbjct: 319 NDKLGHQVGDDI---LREFVLVVTGSIKTTDFLVRWGGEEFIVFSPQTGLDQAFEKAEHI 375

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R+ +E+     +      +T S G+AE  + E IS +I RAD ALY AK  GRNRVV
Sbjct: 376 RRTVEHHLWCHNES----LTCSFGVAEMGN-ERISEVIARADDALYKAKNQGRNRVV 427


>gi|310823301|ref|YP_003955659.1| response regulator/ggdef domain-containing protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396373|gb|ADO73832.1| Response regulator/GGDEF domain protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 349

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 11/171 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + QLS +D L+ L NH  F   L         Y++ L ++  D+D+FK+IND  GHPVGD
Sbjct: 164 LQQLSVLDGLTQLHNHRYFQERLREEFRCAQRYDDALCLILLDLDFFKEINDRHGHPVGD 223

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L         V R GGEEFA     +    A  +A  + K +    +    
Sbjct: 224 TVLCEVARILQQSVRETDIVARYGGEEFAVLLPRTHLAGAITVAERVWKGVAGQPMGADG 283

Query: 213 GPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDI 261
             ++ IT S G++   H+  ++   ++  AD+ALY AK+ GRNRV   S I
Sbjct: 284 --ALRITASLGVSGFPHRTVLTPEQLLLTADEALYRAKREGRNRVCLHSPI 332


>gi|294637097|ref|ZP_06715411.1| putative membrane protein [Edwardsiella tarda ATCC 23685]
 gi|291089725|gb|EFE22286.1| putative membrane protein [Edwardsiella tarda ATCC 23685]
          Length = 331

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 102/197 (51%), Gaps = 11/197 (5%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           ++ +L+ +L  V+ S+ + L+  +  G  L+ L     R+  L+  D L+ L N   F S
Sbjct: 116 VQPVLLGDLEDVLHSLGM-LIGAWGGGYTLRYLARVRARLRYLAMFDDLTALPNRRHFYS 174

Query: 121 SLGSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
            L S  +  ++ ++  D+D+FK++ND FGH VGD+V+      L   F    F  R+GGE
Sbjct: 175 YLMSRPQPRQIGLLIIDLDHFKRVNDEFGHTVGDRVLFQFGRLLRAEFTHHAFPARIGGE 234

Query: 179 EFAAAALGSSEQE--AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236
           EFA       EQ   A++ A+  R +   S I I+    + ++I  GI+     E + + 
Sbjct: 235 EFALVL----EQSDCASVTASAQRLLQRASMIRIAEERMLSVSIGVGIS--TPDEMLESF 288

Query: 237 IYRADQALYVAKKSGRN 253
           I+R D ALY AK +GR 
Sbjct: 289 IHRVDDALYQAKGAGRG 305


>gi|192361381|ref|YP_001983020.1| response regulator [Cellvibrio japonicus Ueda107]
 gi|190687546|gb|ACE85224.1| response regulator [Cellvibrio japonicus Ueda107]
          Length = 587

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 97/183 (53%), Gaps = 21/183 (11%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           ++L+ S+ R+  L+  D L+GL N   F  SL +        +++L+++F D+D FK IN
Sbjct: 128 RQLYDSHQRLRSLAENDSLTGLANRYYFDESLRAAIARAKRQHDQLALLFLDLDNFKLIN 187

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSE---QEAAILAND 198
           D+ GH VGD+V+  ++ +L+ V      V RLGG+EFA  A    + E   Q A  + +D
Sbjct: 188 DSLGHVVGDEVLKEVAQRLLNVVRAGDVVCRLGGDEFAILAHHFDTEESISQLAQRILDD 247

Query: 199 LRK--IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           LR   +I N++  IS+   I     AG          S ++  AD A+Y AK+ GRN   
Sbjct: 248 LRSPIVIGNTEHCISTSIGIATYPDAG-------NSASDLLKAADMAMYRAKQDGRNNFQ 300

Query: 257 CFS 259
            FS
Sbjct: 301 FFS 303


>gi|189425520|ref|YP_001952697.1| diguanylate cyclase [Geobacter lovleyi SZ]
 gi|189421779|gb|ACD96177.1| diguanylate cyclase [Geobacter lovleyi SZ]
          Length = 637

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 10/164 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +L+  D L+G  N   F       IS    +  +LS++  D+D FK+IND  GH  
Sbjct: 469 QQLQRLAETDPLTGTANRRRFYDVLTVEISRSLRHGRQLSVLMLDLDNFKEINDTNGHDT 528

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD++++ L   L  V  T   +GR GG+EF   A  +   EA +LA  L   +     + 
Sbjct: 529 GDRILSRLVALLGDVLRTSDLLGRSGGDEFLILAPETDAVEARMLAEKLLVAVREGLRDP 588

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            +G    +++S G A   + +    ++ RADQALY AK+ GRNR
Sbjct: 589 LAG---QVSVSIGAATLLNGDGPDDLVKRADQALYRAKQYGRNR 629


>gi|320175456|gb|EFW50555.1| diguanylate cyclase GGDEF domain protein [Shigella dysenteriae CDC
           74-1112]
          Length = 558

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND F H  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFSHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 545 KQAGRNR-VCASD 556


>gi|152989140|ref|YP_001348801.1| hypothetical protein PSPA7_3441 [Pseudomonas aeruginosa PA7]
 gi|150964298|gb|ABR86323.1| membrane protein, putative [Pseudomonas aeruginosa PA7]
          Length = 401

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 93/197 (47%), Gaps = 16/197 (8%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSL 122
            LV++  + +L   Y+     +E F+    +  ++  D L+GL+N   +       +   
Sbjct: 199 GLVVLICSFAL---YLQDYAQREQFLGRRLLGMMAEQDSLTGLVNRRYYELLAQRALEQG 255

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFA 181
               + ++++  D+D FK  ND++GHP GD  +  L   L      PM    RLGGEEFA
Sbjct: 256 TREGKGVALILVDVDDFKAYNDHYGHPAGDAALHRLGAVLRQGARRPMDIAARLGGEEFA 315

Query: 182 AAALGSSEQEAAILANDLRKIIENSQI---NISSGPSIHITISAGIAERCHKEPISTIIY 238
                S E     +A  LR+ +E   I     S+GP   +TIS G+A       +  +  
Sbjct: 316 VLLYDSEEGNTLAIAERLRQAVEALGIEHRRSSAGPC--LTISLGVAYSTSGMGLDALYR 373

Query: 239 RADQALYVAKKSGRNRV 255
            AD+ALY AK +GRN V
Sbjct: 374 EADRALYEAKDAGRNMV 390


>gi|313498951|gb|ADR60317.1| Diguanylate cyclase [Pseudomonas putida BIRD-1]
          Length = 503

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 10/175 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           ++L  S  ++  L+  D L+GL N   F  +L             L+++  DID+FK+ N
Sbjct: 322 QQLLESNQQLESLAMHDALTGLANRRCFDEALTQEIRMAHRNGTPLALLMIDIDHFKRYN 381

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GHP GD  +  ++  L      P   + R GGEE A     +    AA++A  + + 
Sbjct: 382 DTYGHPAGDACLQQMAYLLSSCIRRPRDLLARYGGEEMAVILPDTDIDGAAVVARLMHER 441

Query: 203 IENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +    +     P  H+T S GIA  +    +   ++I RAD+ALY+AK++GRNR+
Sbjct: 442 LTLQPVPHEGSPFGHVTASIGIACSDGTTLDSPPSLIERADRALYIAKQAGRNRL 496


>gi|229526422|ref|ZP_04415826.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio cholerae bv. albensis VL426]
 gi|229336580|gb|EEO01598.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio cholerae bv. albensis VL426]
          Length = 367

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 100/191 (52%), Gaps = 8/191 (4%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-- 128
           L+++S  I +L   ++    K+L     ++  LS  D L+ + N   F+  L +  +   
Sbjct: 176 LIVLSSYIVILKRSVAEQT-KQLREMNTQLMTLSNTDSLTNIHNRRYFMMQLNNIQKTQC 234

Query: 129 -LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            ++++ FD+D FK INDNFGH +GD+VI F++ Q   +      + R+GGEEFA  A   
Sbjct: 235 GITLIIFDLDNFKSINDNFGHDLGDQVIQFVARQAKKLISNDQTIARIGGEEFAVIACFP 294

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYV 246
           + + A   A  L   I     + ++ P +  +T+S G+A    K   S  +  AD ALY 
Sbjct: 295 TVETAENFAQTLVTTIREQ--SRTTFPQLGLVTVSIGLA-YYPKPQESYDLVSADNALYQ 351

Query: 247 AKKSGRNRVVC 257
           AK +G++RVV 
Sbjct: 352 AKNAGKDRVVS 362


>gi|291287747|ref|YP_003504563.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809]
 gi|290884907|gb|ADD68607.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809]
          Length = 434

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 11/165 (6%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS+ D L+ + N + F       +  +  Y + +SI+  D+DYFK++ND +GH VGDKV+
Sbjct: 267 LSQQDPLTKIYNRTKFFEEVEKELDRVSRYGQDMSILMIDVDYFKEVNDQYGHLVGDKVL 326

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L+  +           R GGEEFA     ++++ A   A+ +R+ +     +      
Sbjct: 327 IELTQIIRQNIRKSDVFARYGGEEFALLMPMTAQKGAREKADLIREAVSTHNFDKCG--- 383

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +T S G+A     + + + + +AD ALY AK+SGRN V  F +
Sbjct: 384 -RVTCSFGVATYAEGDTVDSFVQKADIALYNAKESGRNMVQVFEE 427


>gi|171057748|ref|YP_001790097.1| diguanylate cyclase [Leptothrix cholodnii SP-6]
 gi|170775193|gb|ACB33332.1| diguanylate cyclase [Leptothrix cholodnii SP-6]
          Length = 366

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 80/165 (48%), Gaps = 14/165 (8%)

Query: 101 SQLSRI---DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
           ++LSRI   D L+G+ N   F  ++G+   K       LS++ FD+D+FK +ND FGH  
Sbjct: 202 AELSRIAITDALTGVWNRRHFEQTIGAERAKAQRHHTPLSLLLFDVDHFKALNDQFGHQA 261

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  L+  +         + R GGEEFA         +A  LA  LR ++     + 
Sbjct: 262 GDQVLTELARLVGRSLRDGDVLARWGGEEFAVILHHCPAADALRLAEKLRGLVAGHAFDR 321

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                  +T S G+AE    E +     R D ALY AK  GRN V
Sbjct: 322 VG----TVTASFGVAELQPDETLDAWFRRVDLALYAAKSGGRNAV 362


>gi|153953341|ref|YP_001394106.1| signal transduction protein [Clostridium kluyveri DSM 555]
 gi|219853970|ref|YP_002471092.1| hypothetical protein CKR_0627 [Clostridium kluyveri NBRC 12016]
 gi|146346222|gb|EDK32758.1| Predicted signal transduction protein [Clostridium kluyveri DSM
           555]
 gi|219567694|dbj|BAH05678.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 354

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 91/172 (52%), Gaps = 17/172 (9%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHP 149
           YN+I + S+ D L+GL   + F S +    EK+       +I+  DID FK+ NDNFGH 
Sbjct: 189 YNKIKENSQKDFLTGLFTRNYFFSVIK---EKIKNCGCGFAIIMVDIDNFKRFNDNFGHQ 245

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEE---FAAAALGSSEQEAAILANDLRKIIENS 206
            GD V+  +S+ +         V R GGEE   +     G+ +    +    +RK IE+ 
Sbjct: 246 YGDVVLKTVSNIIKSSLRKEDLVARYGGEEIIIYMYDIKGTLDVYNRMTT--IRKRIEDE 303

Query: 207 QINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I  +   S H+T+S GI+    ++E +  +I +AD  LY AK +G+N+VVC
Sbjct: 304 LIEYNENSS-HVTVSMGISISSNNEENVEDMIRKADVNLYKAKNTGKNKVVC 354


>gi|33594381|ref|NP_882025.1| hypothetical protein BP3507 [Bordetella pertussis Tohama I]
 gi|33564456|emb|CAE43767.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332383792|gb|AEE68639.1| hypothetical protein BPTD_3456 [Bordetella pertussis CS]
          Length = 475

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 78/157 (49%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHS---AFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ LLN       +S   +Y  K    LS++  DIDYFK IND  GH  GD V+  ++
Sbjct: 297 DTLTRLLNRKYLHVVLSKEVAYARKTGVPLSVLVADIDYFKSINDAHGHDAGDFVLQQVA 356

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +        +  RLGGEEF    + +   +A  +A  LR+ I+     +  G  + +T
Sbjct: 357 SLIASYSRGGDYTFRLGGEEFLVVLVDADGTQALNVAEALRRRIQEKATVLPDGGEVRLT 416

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +S G+A          ++ RADQALY AK  GRNR V
Sbjct: 417 LSIGVAAHDRHPDYQRLLKRADQALYAAKSGGRNRCV 453


>gi|187733517|ref|YP_001879735.1| diguanylate cyclase (GGDEF) domain-containing protein [Shigella
           boydii CDC 3083-94]
 gi|187430509|gb|ACD09783.1| diguanylate cyclase (GGDEF) domain protein [Shigella boydii CDC
           3083-94]
          Length = 558

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND F H  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFSHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 545 KQAGRNR-VCASD 556


>gi|238895023|ref|YP_002919757.1| hypothetical protein KP1_3053 [Klebsiella pneumoniae NTUH-K2044]
 gi|238547339|dbj|BAH63690.1| hypothetical protein KP1_3053 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 489

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 27/167 (16%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+ L N S F  +L     K      LS++  D+D+FK+IND++GH  GDKVI F + 
Sbjct: 330 DPLTRLYNRSFFYDTLNQQLAKVNAQHPLSVLISDLDHFKRINDSYGHVAGDKVIQFAAS 389

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            L           R+GGEEFA   + + E+EA  +A  +R  +   + ++       +TI
Sbjct: 390 VLESHSRVDDAAARIGGEEFALLLVNTGEKEAQAIAERIRLAVSAGESHLPE----RMTI 445

Query: 221 SAGI---------AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S G+         AE C        + RAD+A+Y AK +GRN+V+ +
Sbjct: 446 SMGVYTTYDNSVTAEAC--------VQRADEAMYEAKNNGRNQVIVW 484


>gi|218681657|ref|ZP_03529458.1| response regulator PleD [Rhizobium etli CIAT 894]
          Length = 173

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 11/166 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL N     + L        +    LS++  DID FKQ+ND FGH  GD+V
Sbjct: 6   ELAVTDPLTGLYNRRYLDNHLNVLFNRSMARGRPLSVLITDIDRFKQVNDTFGHDGGDEV 65

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213
           +   + ++           R GGEEF      +S + AA +A  LR  +E++   +  +G
Sbjct: 66  LREFASRVRSTIRGADLACRYGGEEFVVVMPDTSPEIAATVAERLRAAVESTPFMLKRAG 125

Query: 214 PSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
            ++++T S GIA R      P   ++ +AD ALY AK +GRNRVV 
Sbjct: 126 EALNVTASFGIASRIAAVLTP-DQLMKQADLALYEAKNTGRNRVVA 170


>gi|115380215|ref|ZP_01467239.1| ggdef domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115362782|gb|EAU61993.1| ggdef domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 642

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 15/169 (8%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           QL+  D L+G+ N     + +         Y   LSI+  D+DYFK++ND  GH  GD+ 
Sbjct: 442 QLTMTDPLTGVPNRRHLFTRMEQELARAERYQTPLSILMVDVDYFKRLNDAAGHRAGDET 501

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS-QINISSG 213
           +  + D L         + R GGEEF      +S+ +A  +   LR+ + ++  +  SS 
Sbjct: 502 LRKVCDVLRTRVRKVDTLARYGGEEFMILLPQTSKADALEVGEKLRRAVADAPSLTSSSQ 561

Query: 214 PSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           P+ H+TIS G+A    +  H++    ++  +D ALY +K+ GRN+V  +
Sbjct: 562 PTGHVTISIGVACYPVDATHQD---MLMDCSDSALYASKRGGRNKVTAY 607


>gi|114775693|ref|ZP_01451261.1| GGDEF domain protein [Mariprofundus ferrooxydans PV-1]
 gi|114553804|gb|EAU56185.1| GGDEF domain protein [Mariprofundus ferrooxydans PV-1]
          Length = 450

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 94/175 (53%), Gaps = 16/175 (9%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----------LSIVFFDIDYFKQIND 144
           ++++R+ +L+ +D L+ + N    ++ L   NE+          L ++ FDID+FK++ND
Sbjct: 279 LTHDRLQKLAALDPLTAIYNRRFGLARL---NEEFSRAVRTTGHLGVMMFDIDHFKKVND 335

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGD+V+  ++            + R GGEEF      +S++ +  +   +R ++E
Sbjct: 336 TYGHLVGDRVLIQVTKTARAALREGDILMRYGGEEFLVILPVASKENSRDIGERMRHMVE 395

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVC 257
            + +       IH+TIS G+      E      ++  AD+ALY+AK+SGRN+V+ 
Sbjct: 396 ETSVT-DGDQVIHVTISIGVTSYPELEVAGEQDLVKCADEALYLAKESGRNKVIV 449


>gi|33597102|ref|NP_884745.1| hypothetical protein BPP2514 [Bordetella parapertussis 12822]
 gi|33566553|emb|CAE37809.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 475

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 78/157 (49%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHS---AFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ LLN       +S   +Y  K    LS++  DIDYFK IND  GH  GD V+  ++
Sbjct: 297 DTLTRLLNRKYLHVVLSKEVAYARKTGVPLSVLVADIDYFKSINDAHGHDAGDFVLQQVA 356

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +        +  RLGGEEF    + +   +A  +A  LR+ I+     +  G  + +T
Sbjct: 357 SLIASYSRGGDYTFRLGGEEFLVVLVDADGTQALNVAEALRRRIQEKATVLPDGGEVRLT 416

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +S G+A          ++ RADQALY AK  GRNR V
Sbjct: 417 LSIGVAAHDRHPDYQRLLKRADQALYAAKPGGRNRCV 453


>gi|291618849|ref|YP_003521591.1| PleD [Pantoea ananatis LMG 20103]
 gi|291153879|gb|ADD78463.1| PleD [Pantoea ananatis LMG 20103]
 gi|327395201|dbj|BAK12623.1| response regulator PleD [Pantoea ananatis AJ13355]
          Length = 236

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 83/153 (54%), Gaps = 8/153 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL--SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+ + N SA I  +    ++   +++  DID+FK+IND +GHPVGDKVI  L  +  +
Sbjct: 85  DPLTDVWNRSAIIQRISDTLDQAPAALIILDIDFFKRINDEYGHPVGDKVICELVQR--I 142

Query: 165 VFGTPMF--VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
              TP    +GR+GGEEF      +   +A I+A  +   +  S +N  + P   +T S 
Sbjct: 143 QRNTPAIASIGRIGGEEFTIMLPNTWLGDAVIVAGAILASLNASPLN--ALPERLVTASL 200

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G++         T+  +AD ALY AKK GRNRV
Sbjct: 201 GVSWGAAGTRFETLYTQADAALYDAKKHGRNRV 233


>gi|317154951|ref|YP_004122999.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
 gi|316945202|gb|ADU64253.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
          Length = 498

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 97/209 (46%), Gaps = 21/209 (10%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           P Y L    VE     +  + ++L     +  I KE+ +  +R       D L+ + N  
Sbjct: 289 PDYRLGRDQVETFRSAVNHLGLALR----NALIFKEVKLRADR-------DGLTRIYNRH 337

Query: 117 AF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
           +F       I     YN  LS++  D+D+FKQ+ND +GH  GD V+  + + L   F T 
Sbjct: 338 SFDERLIYEIKRRRRYNHDLSLLMVDLDHFKQVNDTYGHKAGDMVLRKVGEILTETFRTT 397

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ER 227
               R GGEEF      +SE+ A  LA  +R+ I+        G    +T S G+A  E 
Sbjct: 398 DLAARYGGEEFVVLLPHTSEEAAWKLAERIRESIQGCVFRF-DGHEFSVTASIGVASVEA 456

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVV 256
                   ++ +AD+ALY AK +GRN VV
Sbjct: 457 GALTRDDDLLIKADKALYKAKNNGRNMVV 485


>gi|225872136|ref|YP_002753591.1| GGDEF domain protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793220|gb|ACO33310.1| GGDEF domain protein [Acidobacterium capsulatum ATCC 51196]
          Length = 532

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 86/172 (50%), Gaps = 13/172 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148
           +  R  +LS ID L+ + N   F  ++ +           LS++  D+D+FK +ND +GH
Sbjct: 331 AMQRFQELSYIDPLTKVANRRQFEETMTTEWYRAMRRTAPLSLLMLDLDHFKLLNDTYGH 390

Query: 149 PVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
             GD  +   +  L          + R GGEEFAA       ++A  +A  LR  IE+  
Sbjct: 391 LRGDDCLMISAQTLSSRLKRAGELLARYGGEEFAAVLPDVKLEDAMQVAETLRSAIESMD 450

Query: 208 INISSGPSI-HITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRV 255
           I  S  P+   +TIS G+A  C+      I  ++  ADQALY AK++GRNRV
Sbjct: 451 IANSQSPNGGRLTISVGVAV-CYPTANLSIEQLVDTADQALYAAKQAGRNRV 501


>gi|237507666|ref|ZP_04520381.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346]
 gi|254191152|ref|ZP_04897657.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237]
 gi|254263742|ref|ZP_04954607.1| diguanylate cyclase [Burkholderia pseudomallei 1710a]
 gi|254301806|ref|ZP_04969249.1| diguanylate cyclase [Burkholderia pseudomallei 406e]
 gi|157811571|gb|EDO88741.1| diguanylate cyclase [Burkholderia pseudomallei 406e]
 gi|157938825|gb|EDO94495.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237]
 gi|234999871|gb|EEP49295.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346]
 gi|254214744|gb|EET04129.1| diguanylate cyclase [Burkholderia pseudomallei 1710a]
          Length = 506

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 16/171 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++L+  D L+GL N  A   +L          +  L+I+F DID+FK+ ND +GH VGD
Sbjct: 333 LARLAGTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGD 392

Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +V+A +S    Q     G    V R GGEEF      +    A ++A  +R  +    I 
Sbjct: 393 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 450

Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                   +T+S G+A    +      I+ I+  ADQALY AK  GRNRVV
Sbjct: 451 HEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAADQALYRAKADGRNRVV 501


>gi|86749533|ref|YP_486029.1| response regulator PleD [Rhodopseudomonas palustris HaA2]
 gi|86572561|gb|ABD07118.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris HaA2]
          Length = 457

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 83/167 (49%), Gaps = 9/167 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N     S L       GS  + L+++  DID+FK IND +GH  GD V
Sbjct: 290 EMAITDGLTGLHNRRYMESHLATLAEQAGSRGKPLALMILDIDFFKAINDTYGHDAGDDV 349

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG- 213
           +   + ++           R GGEEF      +  Q A ++A  LR+ I      I  G 
Sbjct: 350 LREFAVRIKKSIRGIDLACRYGGEEFVIVMPETDLQVAQMVAERLRRAIAGEPFAIEKGT 409

Query: 214 PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I +TIS G++    K E +  ++ RAD ALY AK  GRNRVV  +
Sbjct: 410 KRIAVTISIGLSTLERKGEAVRDLLKRADTALYRAKHDGRNRVVAAA 456


>gi|144897254|emb|CAM74118.1| GGDEF domain [Magnetospirillum gryphiswaldense MSR-1]
          Length = 378

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 8/162 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N + F+              + L+ V  DID+FK +ND++GH  GD+V
Sbjct: 218 RMATEDALTGLSNRATFMQRAAECWRLHARLKQPLAAVMMDIDHFKMVNDHYGHAAGDEV 277

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +   L          GR+GGEEFA    GS   EA ++A  +R  I      +++G 
Sbjct: 278 LRLVGTVLHDHLREVDICGRMGGEEFAILLPGSGRDEAELVAERVRCAIAALVPQVAAG- 336

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            + ++ S G++     + +  ++  AD  LY AK+SGR+RVV
Sbjct: 337 MVRVSASLGVSVAEPGQTLEQLLSVADVNLYRAKQSGRDRVV 378


>gi|33600945|ref|NP_888505.1| hypothetical protein BB1960 [Bordetella bronchiseptica RB50]
 gi|33575380|emb|CAE32457.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 475

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 78/157 (49%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHS---AFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ LLN       +S   +Y  K    LS++  DIDYFK IND  GH  GD V+  ++
Sbjct: 297 DTLTRLLNRKYLHVVLSKEVAYARKTGVPLSVLVADIDYFKSINDAHGHDAGDFVLQQVA 356

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +        +  RLGGEEF    + +   +A  +A  LR+ I+     +  G  + +T
Sbjct: 357 SLIASYSRGGDYTFRLGGEEFLVVLVDADGTQALNVAEALRRRIQEKATVLPDGGEVRLT 416

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +S G+A          ++ RADQALY AK  GRNR V
Sbjct: 417 LSIGVAAHDRHPDYQRLLKRADQALYAAKSGGRNRCV 453


>gi|148545487|ref|YP_001265589.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas putida
           F1]
 gi|148509545|gb|ABQ76405.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida F1]
          Length = 342

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 79/130 (60%), Gaps = 4/130 (3%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+ +  DID FK+IND++GH  GD+V+  ++D    V       GR+GGEEFAA   G +
Sbjct: 213 LAFLLLDIDDFKRINDSYGHQEGDQVLQHIADSGKAVLRRGDLFGRIGGEEFAAVFPGCN 272

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKE-PISTIIYRADQALYV 246
            Q A  +A  L++ I++  ++ S G   + +T+S G+ E   ++  + ++  RAD A+Y 
Sbjct: 273 AQVAEQIAERLQRQIQH--LSFSHGQQTYGVTVSQGLTELTDEDVALDSLYARADAAMYQ 330

Query: 247 AKKSGRNRVV 256
           AK+ G+N++V
Sbjct: 331 AKRQGKNQIV 340


>gi|261211720|ref|ZP_05926007.1| GGDEF domain protein [Vibrio sp. RC341]
 gi|260839070|gb|EEX65702.1| GGDEF domain protein [Vibrio sp. RC341]
          Length = 352

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 9/173 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGD 152
           N +  L+  D L+G  N  +  +S   + +      LS++  D+D+FK IND +GH  GD
Sbjct: 172 NSLLYLASRDPLTGAHNRLSLTTSFHHFEQFSDQTSLSLLVIDLDFFKLINDQYGHDTGD 231

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KV+   +  L  V G      R+GGEEF       S ++A  +   LR II  SQ   + 
Sbjct: 232 KVLVETTRLLAQVVGDSNLY-RIGGEEFCVTLFDQSLEQAEKVCERLRTII--SQHLFAF 288

Query: 213 G-PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           G   + +TIS G+ E    + ++ ++  AD  LY AKK+GRN+V  F   + N
Sbjct: 289 GDKRVQVTISIGVCEYQPGDQLNDLLKFADIELYRAKKAGRNQVRLFQHAQFN 341


>gi|239833976|ref|ZP_04682304.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239822039|gb|EEQ93608.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 461

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 9/170 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S NR   ++  D L+GL N           ++        LS++  D D+FK+IND FGH
Sbjct: 288 SLNRTITMAVTDSLTGLHNRRYLDTHMPVLLTRAMGRERPLSVIMLDFDHFKRINDQFGH 347

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+   + +L         + R GGEEF      S  + A  +A  +R  +  +  
Sbjct: 348 DAGDDVLREFAARLRKNIRGMDLLCRYGGEEFVVVLPDSDVEAARAVAERIRTAVSEAPF 407

Query: 209 NISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++++G   +++T+S GIA  R   +    +  R D ALY AKK GRNR+V
Sbjct: 408 SVANGKHKVNLTVSMGIAGLRLIGDSAEALFSRTDAALYQAKKGGRNRIV 457


>gi|156936597|ref|YP_001440511.1| hypothetical protein ESA_pESA3p05478 [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534851|gb|ABU79675.1| hypothetical protein ESA_pESA3p05478 [Cronobacter sakazakii ATCC
           BAA-894]
          Length = 525

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 90/186 (48%), Gaps = 21/186 (11%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL  +      ++  D L+GL N   F ++L        +    +S++  DID+FK+ ND
Sbjct: 331 ELLKANQTFKSMAMADSLTGLANRRKFDTTLAKVLADAAATGSPVSLIMLDIDFFKRYND 390

Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           + GH  GD  +  +S+ L +V   T   V R GGEEFA     ++ +EA  LA     ++
Sbjct: 391 SRGHAAGDACLRLISNTLQMVTLRTSDLVARYGGEEFAIVLPDTTGEEALALAQRAVCMV 450

Query: 204 ENSQINISSG--PSIHITISAGIAERCH-------KEPISTIIYRADQALYVAKKSGRNR 254
               +   S   P   +TISAG    CH       ++  S +I  AD ALY+AK  GRN+
Sbjct: 451 REKHLPHPSTDLPEQIVTISAG----CHTVRGNGREDAFSVLIRGADTALYLAKNHGRNQ 506

Query: 255 VVCFSD 260
              FS+
Sbjct: 507 AYRFSN 512


>gi|119488985|ref|ZP_01621920.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Phytochrome (GAF) sensor [Lyngbya sp. PCC
           8106]
 gi|119454941|gb|EAW36084.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF &  EAL
           domains) with Phytochrome (GAF) sensor [Lyngbya sp. PCC
           8106]
          Length = 628

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 101/196 (51%), Gaps = 19/196 (9%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNE------ 127
            +T  + +      + ++L I+   + +++  D L+ + N   F   L   +N       
Sbjct: 432 QLTTPIAVAIQQAELYEQLKIANQELEKMAMTDGLTLVANRRFFDKILSQEWNRLRREIG 491

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            LS++  DIDYFK+ ND +GH  GD    KV   L ++   V  +   V R GGEEF A 
Sbjct: 492 TLSLIICDIDYFKRYNDTYGHLAGDSCLKKVAQVLQEE---VKRSGDLVARYGGEEF-AI 547

Query: 184 ALGSSEQEAAILANDL--RKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYR 239
            L  ++ E AIL +++   K+      +  S  + ++TIS G+A    + P+   T+I R
Sbjct: 548 LLPKTDLEGAILVSEVICSKVRALQITHEKSLVAPYVTISVGVASTIPEPPLIPKTLILR 607

Query: 240 ADQALYVAKKSGRNRV 255
           ADQALY AKK+GRNRV
Sbjct: 608 ADQALYEAKKNGRNRV 623


>gi|71281361|ref|YP_267569.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71147101|gb|AAZ27574.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 333

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 82/160 (51%), Gaps = 4/160 (2%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           Q + +D L+GLLN       L   S+ +  S +  DID+FK++ND FGH +GDKVI  ++
Sbjct: 173 QEALVDSLTGLLNRRGCDEKLQNLSHADTHSSLAIDIDHFKKVNDTFGHFIGDKVIQRIA 232

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--H 217
             +    G      R GGEEF      +   EA  +A  +R  I   ++      +    
Sbjct: 233 KTIQSHIGEQDLAVRFGGEEFVVVMTNTPLAEAKNIAEKIRIGISKMRLKQRDTNTFLPP 292

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I++S GIA+  +    +T+  +AD ALY AK SGRN  +C
Sbjct: 293 ISVSIGIAQNDNISEWTTLFEQADTALYQAKNSGRNCCIC 332


>gi|333006522|gb|EGK26025.1| hypothetical protein SFK272_2227 [Shigella flexneri K-272]
 gi|333019049|gb|EGK38340.1| hypothetical protein SFK227_1705 [Shigella flexneri K-227]
          Length = 138

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 6/129 (4%)

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DIDYFK INDN+GH  GDKV++  +  +  + G    V R+GGEEFA A    +  +
Sbjct: 1   MLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVD 60

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYV 246
             ++A  +RK +E          ++++T+S G+       R   +  + ++  AD  LY 
Sbjct: 61  GLLMAEKIRKGVELQPFTWQQ-KTLYLTVSIGVGSGRASYRTLTDDFNKLMVEADTCLYR 119

Query: 247 AKKSGRNRV 255
           +KK GRNR 
Sbjct: 120 SKKDGRNRT 128


>gi|332305139|ref|YP_004432990.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172468|gb|AEE21722.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 358

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 106/230 (46%), Gaps = 32/230 (13%)

Query: 56  TPFYGLEYILVENLSLVIISITISLLLGYISG-------------SILKELFISYNRISQ 102
           T F   EYI + ++ LV         L YISG              I  EL      +  
Sbjct: 138 TGFLTEEYIPLASMMLV--------FLLYISGIGIRSNREYRRSFDIEIELEAQRKELET 189

Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L++ D L+ + N   F             +  +++I+  D+D+FK IND  GH  GD  +
Sbjct: 190 LNQTDALTSIYNRGYFNQHFEDQWQYAMRHELEIAILLIDVDHFKAINDTHGHLAGDACL 249

Query: 156 AFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
             L+  +       + V  R GGEEF     G + ++A  +A  + + I++ +  +  G 
Sbjct: 250 VNLAYAINKTVNRAIDVAARYGGEEFVVLLSGCNTEQARSMAQKIEQAIQDHKF-VHEGT 308

Query: 215 SIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            I +T+S GIA    K  +  ST+I +ADQALY AK  GRNR + F++ E
Sbjct: 309 VIPVTVSIGIATTMPKPKQKSSTLIDQADQALYQAKAQGRNRSIVFTEDE 358


>gi|291525565|emb|CBK91152.1| diguanylate cyclase (GGDEF) domain [Eubacterium rectale DSM 17629]
          Length = 1021

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 26/172 (15%)

Query: 106 IDCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +D L+G  NH AF     S +     KL  V  D+D FK +ND  GH VGD+V++     
Sbjct: 143 LDSLTGTYNHLAFENKCTSLIRQKGTKLLFVMLDVDDFKIVNDTLGHNVGDRVLSQTGQV 202

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILANDLRKII----ENSQINISS 212
           L    G    VGRLGG+EFAA   G  + +A       L+  L+ II     ++ I +++
Sbjct: 203 LKEAVGANGIVGRLGGDEFAAIVFGLEDSDAVDEFCVKLSGRLKNIIFDMEYSASIGMTT 262

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           G    +T                + Y ADQA+Y +K+ G+NR+  F+ I  N
Sbjct: 263 GDDRELT-------------FKDLYYEADQAMYYSKRQGKNRISFFNSIRKN 301


>gi|254491042|ref|ZP_05104223.1| GGDEF domain protein [Methylophaga thiooxidans DMS010]
 gi|224463555|gb|EEF79823.1| GGDEF domain protein [Methylophaga thiooxydans DMS010]
          Length = 310

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 86/159 (54%), Gaps = 10/159 (6%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N SA+ ++L         +   LS++  DID FK IND++GH  GD+ +  ++
Sbjct: 147 DNLTGLGNRSAYETNLTREIDIARRHQTPLSLLVMDIDNFKNINDSYGHNSGDRALKVVA 206

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218
           D +V          R GGEEF    LG+++ +AA L  + R  I  SQI  + G  +   
Sbjct: 207 DTVVQALRLSDACYRFGGEEFTIL-LGNTDIKAARLVAE-RIRIAVSQILCNDGKQNFSF 264

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           T S GIA+   +E    +  RAD ALY AK++GRN  VC
Sbjct: 265 TASLGIAQLHQREQGYHLFERADMALYQAKQTGRNLTVC 303


>gi|78776914|ref|YP_393229.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78497454|gb|ABB43994.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM
           1251]
          Length = 516

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 93/173 (53%), Gaps = 11/173 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIV----FFDIDYFKQINDNFGHPV 150
           ++I +L+  D ++ L N   F     +Y   N++   V      DID+FK+ ND +GH  
Sbjct: 337 DKIEELTITDGMTSLYNRRYFDEIFDNYLRSNQRTKQVPVFIIMDIDHFKEYNDTYGHQA 396

Query: 151 GDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI- 208
           GD  I  +S  +         +  RLGGEEF     G +  EA  LA+D+RK IEN +I 
Sbjct: 397 GDVAIKIVSKVMKTFLKRATDMAFRLGGEEFGILCSGINAIEALHLAHDIRKGIENEKIE 456

Query: 209 NISSGPSIHITISAGIAERCHKEPISTI-IYR-ADQALYVAKKSGRNRVVCFS 259
           + SS  + ++TIS GI      +  ST  IYR AD+ALY AK++GRN+ V + 
Sbjct: 457 HKSSKVNEYLTISIGIIVIEEGKINSTKEIYRCADKALYKAKENGRNQAVLYD 509


>gi|78043169|ref|YP_359730.1| response regulator/sensory box protein/GGDEF domain-containing
           protein [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995284|gb|ABB14183.1| response regulator/sensory box protein/GGDEF domain protein
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 668

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 93/190 (48%), Gaps = 21/190 (11%)

Query: 86  SGSILKELFISY-------NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSI 131
           SG  L E FI          ++ +LS  D L+   N   F   L    E+        ++
Sbjct: 480 SGEKLIETFIDLTERKKLEEQLYRLSITDYLTQAYNRRYFTEMLEREIERAKRTKMPFAL 539

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK +ND FGH  GD V+  L++ +         + R GGEEF      +  ++
Sbjct: 540 IMLDIDHFKNVNDRFGHAAGDLVLKTLANLIKNRIRQTDCLARWGGEEFVILLPNTPVEK 599

Query: 192 AAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           AA LA +LR+     Q+++   P +  +T S G+   C  + + T++ RADQ LY AK S
Sbjct: 600 AAGLAEELRE-----QLSMLEIPGVGRVTASFGVTGYCPGDTLDTLLMRADQMLYTAKAS 654

Query: 251 GRNRVVCFSD 260
           GRN  V FS+
Sbjct: 655 GRN-CVRFSE 663


>gi|332304894|ref|YP_004432745.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172223|gb|AEE21477.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 382

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 93/178 (52%), Gaps = 11/178 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           ++L+EL      + +L+  D L+ L N   F + L         Y   LS++  D+D FK
Sbjct: 195 TVLQELHDKNQLLEELAVQDPLTKLYNRRYFTNKLEIETARSLRYQHPLSLLIVDVDDFK 254

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           QINDN GH VGD+V+  +++ +         V R GG+EF    + +  +++  +AN + 
Sbjct: 255 QINDNDGHLVGDEVLVEIANLITQQMRADDVVCRYGGDEFVILLVEACAEQSKEIANRIC 314

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + IE+      S     +T+S G A+    +P+   + +ADQ +Y++KK G+N+V  F
Sbjct: 315 ESIEHCSFRRVSA---KVTVSIGYAQYV-GQPLGDFMQQADQMMYMSKKRGKNQVAFF 368


>gi|330501736|ref|YP_004378605.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328916022|gb|AEB56853.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 386

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 15/178 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           +L    +++  LSR D L+ L N   F       +++     E LS+V  DID+FK++ND
Sbjct: 209 KLLEQQSQLDLLSRTDSLTQLGNRYQFNNLFPSLVANAVRQGEPLSLVLMDIDFFKKVND 268

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GH  GD  ++  ++++  VF      + RLGGEEF     G++  +A  LA   R+ +
Sbjct: 269 EHGHAGGDACLSAFAERMRKVFRRDADALLRLGGEEFGVLLPGTTLAQAWDLAEHFRQEL 328

Query: 204 ENSQINISSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           E   + + +G  + +T S G+   C    H         R D ALY AK+ GRNR+V 
Sbjct: 329 EAEGL-LLAGQRLTLTTSLGVG--CFSSRHDGDADAFFKRVDGALYRAKREGRNRLVA 383


>gi|310657418|ref|YP_003935139.1| hypothetical protein CLOST_0104 [Clostridium sticklandii DSM 519]
 gi|308824196|emb|CBH20234.1| protein of unknown function [Clostridium sticklandii]
          Length = 563

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 11/162 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSL------GSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q +  D L+G  N S            G  N E  S++ FD+D+FKQIND +GH  GD V
Sbjct: 263 QRAMRDSLTGAYNRSYLKEKFSKEFLKGCKNGETFSVILFDLDFFKQINDEYGHQKGDLV 322

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   +D +  +      + R GGEEF     G+  +EA I+A  +R+ +E  ++    G 
Sbjct: 323 LKGTADLVSKLIRKTDVLCRWGGEEFLVMLPGAHLEEATIVAEKIRREVETLRV---KGV 379

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              IT S G+ +  +++   ++  R D +LY+AK +GRN+VV
Sbjct: 380 K-KITSSFGVTQCQNEDTEDSLFKRVDNSLYLAKLTGRNKVV 420


>gi|297516585|ref|ZP_06934971.1| diguanylate cyclase [Escherichia coli OP50]
          Length = 176

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 7/161 (4%)

Query: 106 IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+ LLN     + F   +   N     LS++  D+D FK+IND +GH  GD+++  +
Sbjct: 13  MDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFKEINDTWGHNTGDEILRKV 72

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           S        +  +V R GG+EF      +SE E    A  +R  +E +++  ++G  I +
Sbjct: 73  SQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIRSRVEKTKLKAANGEDIAL 132

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++S G A          +I  AD+ALY+AK+ GRNRV  + 
Sbjct: 133 SLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELWK 173


>gi|291528332|emb|CBK93918.1| diguanylate cyclase (GGDEF) domain [Eubacterium rectale M104/1]
          Length = 1021

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 26/172 (15%)

Query: 106 IDCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +D L+G  NH AF     S +     KL  V  D+D FK +ND  GH VGD+V++     
Sbjct: 143 LDSLTGTYNHLAFENKCTSLIRQKGTKLLFVMLDVDDFKIVNDTLGHNVGDRVLSQTGQV 202

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILANDLRKII----ENSQINISS 212
           L    G    VGRLGG+EFAA   G  + +A       L+  L+ II     ++ I +++
Sbjct: 203 LKEAVGANGIVGRLGGDEFAAIVFGLEDSDAVDEFCVKLSGRLKNIIFDMEYSASIGMTT 262

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           G    +T                + Y ADQA+Y +K+ G+NR+  F+ I  N
Sbjct: 263 GDDRELT-------------FKDLYYEADQAMYYSKRQGKNRISFFNSIRKN 301


>gi|255318315|ref|ZP_05359550.1| diguanylate cyclase [Acinetobacter radioresistens SK82]
 gi|262379059|ref|ZP_06072215.1| response regulator [Acinetobacter radioresistens SH164]
 gi|255304627|gb|EET83809.1| diguanylate cyclase [Acinetobacter radioresistens SK82]
 gi|262298516|gb|EEY86429.1| response regulator [Acinetobacter radioresistens SH164]
          Length = 445

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 95/196 (48%), Gaps = 17/196 (8%)

Query: 78  ISLLLGYISGSILKELFISYNRI-SQLSR-------IDCLSGLLNHSAFISSL------- 122
           ISL  G I+ +I      S NRI SQL R        D L+  L    F+ S        
Sbjct: 247 ISLRFGIITMAIAPLTVSSINRIRSQLIRELQHHVAHDELTASLTRRQFMRSAHLLLRQR 306

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
              ++ L+++  DID+FK IND +GH  GD+ +   +  +          GRLGGEEFA 
Sbjct: 307 TQESQSLAVLMLDIDHFKLINDKYGHQAGDEALRACAAVIRRSLRGYDLFGRLGGEEFAI 366

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRA 240
             L     EA  +A  +R+ ++   I + +     I IS G+       P  I  ++++A
Sbjct: 367 VLLDVGPAEAFEIAERIRETLKTHIIQLDAETQFSIRISIGLTLFNPAVPHNIEALLHKA 426

Query: 241 DQALYVAKKSGRNRVV 256
           D ALY AK+SGR+RVV
Sbjct: 427 DLALYEAKRSGRDRVV 442


>gi|162451174|ref|YP_001613541.1| GGDEF domain-containing protein [Sorangium cellulosum 'So ce 56']
 gi|161161756|emb|CAN93061.1| GGDEF domain protein [Sorangium cellulosum 'So ce 56']
          Length = 298

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 10/169 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +  I +L   D L+ + N  +F       +S    Y+  L+++ FDID+FK IND  GH 
Sbjct: 131 HEEIYRLMTFDGLTQVHNKRSFEVALEREVSRACRYHRHLALIMFDIDHFKNINDTRGHL 190

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++            + R+GGEEFA      +   A ++A  LR ++E +   
Sbjct: 191 TGDAVLRQMAALAAANVRRDDILARVGGEEFALLVPEIAVDSARLVAEKLRALVERTPFR 250

Query: 210 ISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
              G  + +T S G+A      P+S   +  RAD+ LY AKK+GRNRV+
Sbjct: 251 FEDG-EVAVTASFGVAGVTPDAPVSPMELYRRADERLYHAKKAGRNRVM 298


>gi|170769350|ref|ZP_02903803.1| diguanylate cyclase domain protein [Escherichia albertii TW07627]
 gi|170121674|gb|EDS90605.1| diguanylate cyclase domain protein [Escherichia albertii TW07627]
          Length = 564

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +F+  + +   +  D L+ L N  A             ++    
Sbjct: 371 TMLLISWYVIRRMVSNMFVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHKHPF 430

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           SI+  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G++ 
Sbjct: 431 SIIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISHSLRAQDVAGRVGGEEFCVVLPGTNL 490

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            +A  +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 491 AQAKDVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 551 KQAGRNR-VCASD 562


>gi|148975952|ref|ZP_01812741.1| GGDEF domain protein [Vibrionales bacterium SWAT-3]
 gi|145964697|gb|EDK29950.1| GGDEF domain protein [Vibrionales bacterium SWAT-3]
          Length = 656

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 76/135 (56%), Gaps = 8/135 (5%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S+   D+DYFKQ+ND  GH VGD+V+  ++ ++     +   V R GGEEF     GS +
Sbjct: 522 SLAILDLDYFKQVNDTHGHDVGDQVLVEVARRIQQHLFSSDVVARWGGEEFVLLLSGSLD 581

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-----ADQAL 244
            +  +  + +R  I  + I+  SGP + I+ S G +    ++ ++   Y+     AD AL
Sbjct: 582 PQQQL--DIIRMAIAQTPIDTPSGP-LDISTSIGASVSIAQDQLNRDTYKKHLKVADDAL 638

Query: 245 YVAKKSGRNRVVCFS 259
           Y AK+SGRNRVVC +
Sbjct: 639 YQAKESGRNRVVCVA 653


>gi|126443971|ref|YP_001062835.1| putative transmembrane transcriptional sensor regulator
           [Burkholderia pseudomallei 668]
 gi|134282461|ref|ZP_01769165.1| diguanylate cyclase [Burkholderia pseudomallei 305]
 gi|126223462|gb|ABN86967.1| putative transmembrane transcriptional sensor regulator
           [Burkholderia pseudomallei 668]
 gi|134246018|gb|EBA46108.1| diguanylate cyclase [Burkholderia pseudomallei 305]
          Length = 506

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 16/171 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++L+  D L+GL N  A   +L          +  L+I+F DID+FK+ ND +GH VGD
Sbjct: 333 LARLAGTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGD 392

Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +V+A +S    Q     G    V R GGEEF      +    A ++A  +R  +    I 
Sbjct: 393 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 450

Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                   +T+S G+A    +      I+ I+  ADQALY AK  GRNRVV
Sbjct: 451 HEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAADQALYQAKADGRNRVV 501


>gi|110636309|ref|YP_676517.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Mesorhizobium sp. BNC1]
 gi|110287293|gb|ABG65352.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Chelativorans sp. BNC1]
          Length = 730

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 89/188 (47%), Gaps = 19/188 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL  S  R   L+  D L+GL N +   S L            + +++  D+D FK +ND
Sbjct: 290 ELQESEGRARHLAFHDWLTGLPNRARLESRLDDILADLLPGQAEAAVLLLDLDRFKNVND 349

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKI 202
             GH  GD+VI   + +L  + G    V RLGG+EFA      +  EAA   +D  L   
Sbjct: 350 TLGHRAGDQVIQQTARRLKDIVGNTGLVARLGGDEFAIVIASRNAVEAASELSDRVLAAF 409

Query: 203 IENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           I   Q+    G + HI +S GIA       H+E    I+ +AD ALY AKK GR R   F
Sbjct: 410 IPPFQLE---GDTAHIGVSIGIATAPEAALHRE---EILRKADIALYEAKKQGRGRYELF 463

Query: 259 SDIENNTC 266
           S   ++T 
Sbjct: 464 SRTMDDTV 471


>gi|320535327|ref|ZP_08035446.1| diguanylate cyclase domain protein [Treponema phagedenis F0421]
 gi|320147827|gb|EFW39324.1| diguanylate cyclase domain protein [Treponema phagedenis F0421]
          Length = 366

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 2/128 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LSI+  DID+FK+IND +GH  GD V+  ++  +     T     R GGEEF      ++
Sbjct: 232 LSILMLDIDFFKKINDTYGHACGDLVLQQVAKIIQSCTRTGDMAARYGGEEFIVMLYNTN 291

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247
            +EA  +A  +R +I++  I  +    + +TIS G+A    K E +  ++ RAD ALY +
Sbjct: 292 SKEAQKIAERIRTLIQDLSIQYNEF-EVRVTISIGVATFLQKMESLKNLLERADIALYQS 350

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 351 KENGRNRV 358


>gi|302340686|ref|YP_003805892.1| diguanylate cyclase [Spirochaeta smaragdinae DSM 11293]
 gi|301637871|gb|ADK83298.1| diguanylate cyclase [Spirochaeta smaragdinae DSM 11293]
          Length = 398

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 79/164 (48%), Gaps = 11/164 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + ++S  D L+GL N       L         Y  K +++  DID+FK+IND +GH  GD
Sbjct: 235 LKRISVKDELTGLYNRRKIDDLLKHEWERTIRYKTKFTVIMMDIDHFKKINDTYGHDAGD 294

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  LS  L+         GR GGEEF      +   ++ ILA   R  I  S+  I  
Sbjct: 295 LVLKKLSRILLDNIRKADSCGRWGGEEFLIICQEADCHQSLILAERFRDTI--SKHRIPD 352

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            PS  +T S GIA       I T++  AD  LY AK  GRNRVV
Sbjct: 353 LPS--VTASFGIASSEESSSIQTLLKAADSRLYEAKLQGRNRVV 394


>gi|241764147|ref|ZP_04762182.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii
           2AN]
 gi|241366484|gb|EER60984.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii
           2AN]
          Length = 418

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 81/155 (52%), Gaps = 11/155 (7%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N       L         +   LS++  DID+FK++ND FGHPVGD+V+  ++
Sbjct: 258 DPLTGLHNRRGGEKILAEAQADARKHGRPLSLLVCDIDHFKRVNDRFGHPVGDRVLRDVA 317

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L +   +   V R GGEEF       +E  AA LA  +R  + ++  +   G    +T
Sbjct: 318 CMLRLAVRSRDAVIRWGGEEFVIVLDSCTEARAAELAERIRGRV-DAHRDAEVGA---LT 373

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +S G+A     E +  ++ RAD ALY AK+ GRNR
Sbjct: 374 LSMGLATLLGGETVQQLVGRADAALYDAKRGGRNR 408


>gi|114320677|ref|YP_742360.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227071|gb|ABI56870.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 237

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 93/209 (44%), Gaps = 35/209 (16%)

Query: 74  ISITISLLLGYISGSIL--------KELFISYNRISQLSRIDCLSGLLNHSAF------- 118
           I++ I+    Y  G  L         E      RI  L+  D L+G++N   F       
Sbjct: 34  ITVEITTNAAYYKGVKLIFCNCRDITERKRDQERIRYLATTDALTGIMNRGEFTRHLTKE 93

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           I     +N  +++V +D+D+FK++ND +GH  GD+V+     Q+           R GGE
Sbjct: 94  IERAARFNRPVAVVMYDLDHFKRVNDTYGHDAGDEVLKTAVAQVNNAIRRVDVHARWGGE 153

Query: 179 EF--------AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
           EF         AAA+ S+E+  A +A    K  E             +T S G+     +
Sbjct: 154 EFILLLPETDLAAAVKSAERLRAAIAEHPFKQPER------------VTASFGVTTLGPR 201

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +    +I RAD ALY+AK +GRNRV   S
Sbjct: 202 DRFDVLIKRADDALYLAKHAGRNRVEALS 230


>gi|109899867|ref|YP_663122.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109702148|gb|ABG42068.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
          Length = 561

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 15/175 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGD 152
           + +LS +D L+G+ N  A    L      +  EK  LS++  D+DYFK  NDN+GH  GD
Sbjct: 386 LQELSLLDGLTGIPNRRALDERLERELRLANREKWSLSLLMIDVDYFKLYNDNYGHAAGD 445

Query: 153 KVIAFLSDQLVVVFGTPM--FVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQIN 209
             +  ++ QL+  F      F  R GGEEF    L +++++ AI +A  L + + ++ + 
Sbjct: 446 TALVAIA-QLLERFAQRSGDFAARYGGEEF-VFILPNTDKDGAIRVATALLEAVRDANLE 503

Query: 210 ISSGPS-IHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDI 261
               P   H+TIS G++    ++P     +   AD ALY AK+SGR+R+V +SDI
Sbjct: 504 HKYSPKEEHLTISIGVSTCQPQDPKDADYVQRLADHALYSAKQSGRDRMVHYSDI 558


>gi|226944371|ref|YP_002799444.1| GGDEF protein [Azotobacter vinelandii DJ]
 gi|226719298|gb|ACO78469.1| GGDEF protein [Azotobacter vinelandii DJ]
          Length = 318

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 95/179 (53%), Gaps = 17/179 (9%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFK 140
           I +EL  + ++   L+ +D L+GL N  AF   LG             ++++ FD+D+FK
Sbjct: 140 IEEELAAAKHQAEALAHVDELTGLNNRRAFFQ-LGLQAFRQAARAAGPIAVIMFDLDHFK 198

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           QIND  GH VGDKV+  +++ +          GRLGGEEFA     ++  EA   A  LR
Sbjct: 199 QINDAHGHLVGDKVLVAVANGMRSQIREADIAGRLGGEEFALILPETTLSEALTAAERLR 258

Query: 201 KIIENSQINISSGPSIHI--TISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
            +I  +++   +  SIHI  T S G+A  C      +  ++  AD  LY AK++GRNRV
Sbjct: 259 GVIAATRL---AHGSIHIQCTSSFGVAV-CEDGSLDLEHMLSLADAGLYKAKRNGRNRV 313


>gi|330958634|gb|EGH58894.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 533

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 117/249 (46%), Gaps = 26/249 (10%)

Query: 25  HTFMIYFSIFFSIFIATVIF---IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL 81
           + + + +  FFSIF+  V++   + ++ ++ + L   Y  ++   E    V+ S   +LL
Sbjct: 13  YLYTVLWLYFFSIFLLAVVWEFKLESVAMYMLNLP--YDPDFEDAERWRFVLTSTGFALL 70

Query: 82  LGYIS----GSILKELFISYNRI-------SQLSRIDCLSGLLN----HSAFISSLGSYN 126
              +       +++ L  SYN +         L+R D LSGLLN    H   ++ L   +
Sbjct: 71  SMVVPFILLMRLMQRLQGSYNDLLAAQALSDSLARHDPLSGLLNRRVFHEQLVARLQQAS 130

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAAL 185
            + ++   D+D FK IND  GH VGD  I  ++D L     G    V RLGG+EF  A  
Sbjct: 131 VQTAVFLIDLDKFKLINDTHGHAVGDAAICAVADSLREATMGWQASVARLGGDEFGLAVS 190

Query: 186 GS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQA 243
           G  S+ E A LA     ++ N   + +  P + ++ + G+A           ++ RAD A
Sbjct: 191 GDFSQIELATLAE---SVLANIAASSACLPRMTLSATLGVAISPLDGSDAEILLQRADSA 247

Query: 244 LYVAKKSGR 252
           +Y  K SGR
Sbjct: 248 MYRGKNSGR 256


>gi|301644585|ref|ZP_07244575.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|301077093|gb|EFK91899.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
          Length = 558

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 545 KQAGRNRV 552


>gi|293609140|ref|ZP_06691443.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829713|gb|EFF88075.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 473

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 81/159 (50%), Gaps = 11/159 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL-----SIVFF--DIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+  L    F+ S+    EK+     +  FF  D+D+FKQ+NDN+GH +GD+ +    
Sbjct: 312 DELTSSLTRRQFLQSVRLLQEKVQKENKTSAFFMLDVDHFKQVNDNYGHQIGDRALQTCV 371

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +  +      +GR GGEEFA     ++++ A  LA  +R  I    I I     I I 
Sbjct: 372 TTIQNILHPHDLLGRFGGEEFAIFIADTTKESAFELAEQIRIKISQQPIYIYGKLPIFIQ 431

Query: 220 ISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S GI   +   H+  I ++   AD ALY AK+ GRNRV
Sbjct: 432 VSIGISLYSPSSHRA-IESLFKEADDALYQAKRQGRNRV 469


>gi|290509678|ref|ZP_06549049.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Klebsiella sp. 1_1_55]
 gi|289779072|gb|EFD87069.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Klebsiella sp. 1_1_55]
          Length = 720

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 109/225 (48%), Gaps = 11/225 (4%)

Query: 46  ANIFLFYIGLTP-FYGLEYILVENLSLVIIS-ITISLLLGYI--SGSILKELFISYNRIS 101
           A+  L Y+   P   G E     + S+ +I+ +  SL+L +I  S   + +L     +  
Sbjct: 239 ADEVLGYLAWQPRLPGAEAAQASSGSMGLIAGVAASLILLFILFSSLGMYKLARGERQAR 298

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +++ ID LS L N  A +  L    E        +VF D+D FK +NDN+GH VGD +I 
Sbjct: 299 EIAMIDWLSRLPNRRALLLRLSQVCETGKHDIQCVVFIDLDGFKDVNDNYGHDVGDALIR 358

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++  L     T   + R+GG+EFA A  G+   + A         +  + + +S    I
Sbjct: 359 HIASALQTRVPTGAMLARMGGDEFAMAVSGAKAIDRAAAFAWAALELLKAPVTLSK-RKI 417

Query: 217 HITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSD 260
           +I  S GIA     E  ST ++ RAD A+Y AKKSG+ R   + D
Sbjct: 418 YIGASIGIASGAPAECSSTELFRRADIAMYHAKKSGKGRTAWYDD 462


>gi|258623913|ref|ZP_05718866.1| sensory box/GGDEF family protein [Vibrio mimicus VM603]
 gi|258583707|gb|EEW08503.1| sensory box/GGDEF family protein [Vibrio mimicus VM603]
          Length = 628

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 89/175 (50%), Gaps = 20/175 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDIDYFKQINDNFGH 148
           NR+ +LS  D L+ L N   F  ++     K+          +   DID+FK+IND FGH
Sbjct: 459 NRLRELSEKDALTDLWNRRKFDQAIHLECAKVRRYPNLAQTCLAIVDIDHFKRINDKFGH 518

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+V+  +++ +        F+ R+GGEEFA     +S +EA  + N +R  I ++Q 
Sbjct: 519 SEGDRVLRGVTNSIQEQLRESDFIARIGGEEFAIIFPYTSIEEAERVLNRVRLYIASTQP 578

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSDIE 262
           +        +TIS G+ + C    I    Y RAD ALY +K SGRN++   +  E
Sbjct: 579 H-------DVTISGGVTDLC---AIPDQSYKRADLALYESKSSGRNQISILTQAE 623


>gi|152997763|ref|YP_001342598.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150838687|gb|ABR72663.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 368

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 4/167 (2%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL--GSYNEKLSIVFFDIDYFKQINDNFGH 148
           +EL  +  ++  ++ ID L+ LLN    +  L   SY+    ++  D+D+FK+IND +GH
Sbjct: 201 QELKETSAKLKLVAYIDALTELLNRRGMLQRLETSSYH-NFHLLLADVDFFKRINDGYGH 259

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD  ++ L+  + +         R GGEEF  A    SE EA  LA  +RK +E+ + 
Sbjct: 260 DAGDYALSQLAKIIQMSIPEGGLASRWGGEEFLIAVCDCSESEAFALAESIRKDVEDYEF 319

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                    +T+S G+A       +   I  AD  LY AK++GRNR 
Sbjct: 320 EYLD-QKFRMTLSFGMATMNESTSLREAITIADSRLYGAKRAGRNRT 365


>gi|91778946|ref|YP_554154.1| RNase II stability modulator [Burkholderia xenovorans LB400]
 gi|91691606|gb|ABE34804.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
          Length = 667

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 11/182 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYF 139
           SG+ + E  ++  R+++L+  D L+GL N +A    +       +  E + ++F D+D F
Sbjct: 220 SGTDITEERLAQERLTELANTDSLTGLANRNAIQDRIRAAIEDATPGEAVGVLFLDLDNF 279

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND++GH  GD++I  +S  + +       + RLGG+EF   A   +  E  + A   
Sbjct: 280 KKVNDHYGHVFGDRLIRDVSSAISLCLNEGDTLARLGGDEFIVLAARGTAHELEVTA--- 336

Query: 200 RKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++I+E  +   S G   ++   S GIA    H + + ++I  AD A+YVAK  G+     
Sbjct: 337 QRILERMRTPFSLGLVEVYTGCSIGIARYPEHGDSLESLIRSADTAMYVAKDEGKRTHRV 396

Query: 258 FS 259
           FS
Sbjct: 397 FS 398


>gi|26989228|ref|NP_744653.1| GAF domain/GGDEF domain-containing protein [Pseudomonas putida
           KT2440]
 gi|24984071|gb|AAN68117.1|AE016443_8 GAF domain/GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 345

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 82/171 (47%), Gaps = 8/171 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEK---LSIVFFDIDYFKQINDN 145
           L +  +R  + + +D L+ L N  A  +     L    E+   L  V+ D+D FK +ND 
Sbjct: 170 LRVEMDRGQRRALLDPLTQLWNRGALAAFQNRELRLAEERGLQLGAVYADLDRFKSVNDE 229

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GDKV+   + +L         + R GGEEF A       QE A +A  LR+ I +
Sbjct: 230 HGHDAGDKVLCECARRLRATLRPDDLLVRQGGEEFVALLRVKDSQELAQIAERLRQSIGS 289

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +   +  GP   +T+S G A     E I   I RAD  LY AK  GR++VV
Sbjct: 290 APFLLPGGPR-KMTMSIGCALLTQGEQIDDAIKRADGGLYAAKHGGRDQVV 339


>gi|120556349|ref|YP_960700.1| response regulator receiver modulated diguanylate cyclase
           [Marinobacter aquaeolei VT8]
 gi|120326198|gb|ABM20513.1| response regulator receiver modulated diguanylate cyclase
           [Marinobacter aquaeolei VT8]
          Length = 539

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 11/155 (7%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +  L          ++ +     DID+FK++ND FGHP+GD+++  LS
Sbjct: 381 DSLTGLFNHTHTLHLLEQEIVRARQKDQPMCFAMIDIDFFKKVNDTFGHPIGDRILRSLS 440

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218
             L         +GR GGEEFA     +   +A  + N++R+    S++   +G    ++
Sbjct: 441 MFLKQRLRKTDHIGRYGGEEFAIILPNTRPGDARNVLNEIRERF--SELTQQAGDREFNV 498

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           T S GIA+    E    +  RAD+ALY +K+ GRN
Sbjct: 499 TFSCGIAD-WQGETAQALCERADRALYTSKEHGRN 532


>gi|150389362|ref|YP_001319411.1| diguanylate cyclase [Alkaliphilus metalliredigens QYMF]
 gi|149949224|gb|ABR47752.1| diguanylate cyclase [Alkaliphilus metalliredigens QYMF]
          Length = 381

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 11/182 (6%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFD 135
            Y++G   ++ F+    + ++S  D L+G+ N   F       I     Y   LS V  D
Sbjct: 189 AYMTGFYKRKQFVDSRELLRVSITDPLTGIYNRGKFNEELNRWIDYCNRYENALSFVMLD 248

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID FK++ND +GH +GD+VI  +   +           R GGEEF      +   +A  +
Sbjct: 249 IDDFKRVNDGYGHLIGDRVIQNIVLTIKKGIRNTDIFARWGGEEFVILLPNTDTDQAMEM 308

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              +R  I+N++         +IT S G+      E   +++ RAD+ LY AK  G+N V
Sbjct: 309 MERMRVCIQNTK----HDKVENITCSFGLVALRKSENAESLLQRADKLLYDAKNCGKNAV 364

Query: 256 VC 257
           +C
Sbjct: 365 IC 366


>gi|157155861|ref|YP_001463257.1| diguanylate cyclase [Escherichia coli E24377A]
 gi|157077891|gb|ABV17599.1| diguanylate cyclase [Escherichia coli E24377A]
          Length = 558

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNSGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRVVCFSD 260
           K++GRN +VC SD
Sbjct: 545 KQAGRN-LVCASD 556


>gi|323972745|gb|EGB67945.1| diguanylate cyclase domain-containing protein [Escherichia coli
           TA007]
          Length = 564

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYEFEQLQSLADRRLYLA 550

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 551 KQAGRNRV 558


>gi|315136592|dbj|BAJ43751.1| putative diguanylate cyclase [Escherichia coli DH1]
          Length = 558

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 545 KQAGRNRV 552


>gi|261252650|ref|ZP_05945223.1| GGDEF family protein [Vibrio orientalis CIP 102891]
 gi|260936041|gb|EEX92030.1| GGDEF family protein [Vibrio orientalis CIP 102891]
          Length = 368

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 89/174 (51%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           K+L     ++ +L+  D L+ L N    I  L +Y       +E L  +  D+DYFKQ+N
Sbjct: 193 KQLSRVNKQLEELTLTDSLTQLPNRRCAIRKLKAYWQESAENDEPLVCIMIDVDYFKQVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+++  L+  L   F +   V RLGG+EF      +  +    +A  +R  +
Sbjct: 253 DTAGHDAGDRLLVELAQTLADSFRSDDLVCRLGGDEFFVICPNTESEGGVHIAERVRHKV 312

Query: 204 ENSQINISSGPSI-HITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             +Q+ +  G S+   +IS G+ ER  +    + +I  AD A+Y AK +GRNRV
Sbjct: 313 --NQMLVPVGDSVWRGSISVGVGERTPEMIDFNNLIKAADNAVYKAKSAGRNRV 364


>gi|251780630|ref|ZP_04823550.1| GGDEF domain protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243084945|gb|EES50835.1| GGDEF domain protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 695

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 9/172 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           +N +   ++ D L+G+ N +  ++   +         +  SI+  D+D+FKQINDN+GH 
Sbjct: 523 FNTVEHFAKYDSLTGMFNRNVILTQGENILNNRLETKQNFSIIMIDVDFFKQINDNYGHD 582

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-I 208
           +GD V+  +S  +        ++GR GGEEF       +  EA  +A+ +R  +EN +  
Sbjct: 583 IGDIVLKDVSSIIKNEIRNTDYLGRYGGEEFLVLLPNINLDEAKKIADRIRISVENYKYY 642

Query: 209 NISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++S     +T+S G+ E    E      + +AD+ALY+AK  GRN  + +S
Sbjct: 643 YLTSEKYNRVTLSLGVYEFNKNEFDFFEGVKKADKALYMAKSLGRNMAIEYS 694


>gi|228922797|ref|ZP_04086095.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836852|gb|EEM82195.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 430

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ ID L+ + N   F   L          +EK++I+ FDID FK +ND +GH 
Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRTDEKIAIILFDIDNFKTVNDTYGHD 320

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 321 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 379

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +G S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 380 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 425


>gi|254480904|ref|ZP_05094150.1| GGDEF domain protein [marine gamma proteobacterium HTCC2148]
 gi|214038699|gb|EEB79360.1| GGDEF domain protein [marine gamma proteobacterium HTCC2148]
          Length = 610

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 85/172 (49%), Gaps = 8/172 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           +L  +  R+++ +R+D L+GLLN   F       I  +    +  S+V  D+D FK  ND
Sbjct: 429 DLSAANRRLAEAARVDHLTGLLNRRGFTEEAETEIRRMFRSGKSFSLVLTDVDNFKSFND 488

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD V+  ++  L         + R GGEEF      +  + AA LA  LR+ I 
Sbjct: 489 RHGHVCGDHVLKRMASILEERTRDVDRIARWGGEEFILLLPETETEGAANLAEKLRESIA 548

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +     +   + IT++ GIA     E + T I RAD ALY  K+ GRN+V+
Sbjct: 549 ENVFEFDN-QRLKITMTFGIASFRRGESLDTCIARADTALYHGKEGGRNKVM 599


>gi|167615849|ref|ZP_02384484.1| GGDEF domain protein [Burkholderia thailandensis Bt4]
 gi|257142438|ref|ZP_05590700.1| GGDEF domain-containing protein [Burkholderia thailandensis E264]
          Length = 489

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 86/171 (50%), Gaps = 16/171 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           +++L+  D L+GL N  A   +L     +       L+I+F DID+FK+ ND +GH VGD
Sbjct: 316 LARLAGTDSLTGLHNRRALDETLEREWRRAVGGERPLAILFVDIDHFKRYNDTYGHQVGD 375

Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +V+A +S    Q     G    V R GGEEF      +    A ++A  +R  +    I 
Sbjct: 376 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 433

Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                   +T+S G+A    +      I+ I+  ADQALY AK +GRNRVV
Sbjct: 434 HEGSEVGFVTVSVGVAVWQPDGARAPHIAAIVEAADQALYQAKAAGRNRVV 484


>gi|238783276|ref|ZP_04627301.1| Diguanylate cyclase [Yersinia bercovieri ATCC 43970]
 gi|238715869|gb|EEQ07856.1| Diguanylate cyclase [Yersinia bercovieri ATCC 43970]
          Length = 372

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 3/164 (1%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +Y  +   + ID L+ L N ++    ++++ S      ++  D+D+FK +ND +GH  GD
Sbjct: 186 AYFAMKNRANIDKLTQLNNRASVDYRLNAIHSSRLACGLMILDLDHFKSVNDTYGHDGGD 245

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++  +   L        FVGR GGEEF         Q    +A  +R+ +EN  + +S 
Sbjct: 246 LLLTEVGKLLTSTIRDEDFVGRFGGEEFIVITHSHDPQAIKAVAERIRRRVENLDVELSD 305

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  I  TIS G +       +   I   D+ALY AK  GRN+VV
Sbjct: 306 GRKIEATISIGASLYLPGMSMLKAIKMTDEALYQAKNQGRNQVV 349


>gi|119357129|ref|YP_911773.1| diguanylate cyclase [Chlorobium phaeobacteroides DSM 266]
 gi|119354478|gb|ABL65349.1| diguanylate cyclase [Chlorobium phaeobacteroides DSM 266]
          Length = 424

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 95/185 (51%), Gaps = 9/185 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           S+ +++ +   ++ +L   D  + L N+  F       +     ++ K+S+   DID+FK
Sbjct: 235 SLCEDVAVKSKKLDELFIRDEKTTLYNYRYFKEHLIIDVERAKRFDYKVSLAMIDIDHFK 294

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q ND  GH  GD+V+  L+D +V    +     R GGEEFA     ++ + A+ +A  LR
Sbjct: 295 QYNDANGHIAGDQVLGRLADVIVSQCRSSDVPSRFGGEEFAVLFPKTAHETASSIAERLR 354

Query: 201 KIIENSQI-NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +I    I +    PS  +T+S GIA          T+I  AD+ALY AK +GRN V+ F
Sbjct: 355 MVICAEPIPHEKHQPSGRLTVSIGIATFPDDAADWYTLINNADRALYHAKAAGRNMVIAF 414

Query: 259 SDIEN 263
           S I+ 
Sbjct: 415 SSIDQ 419


>gi|332994633|gb|AEF04688.1| Signaling protein with a acyltransferase and GGDEF domains
           [Alteromonas sp. SN2]
          Length = 635

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 94/180 (52%), Gaps = 17/180 (9%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           L+EL      + +L+ ID L+G+ N   F   L S   +       LSI   DID+FK+I
Sbjct: 454 LRELSEVNQELERLTAIDPLTGINNRRHFDKKLKSEGRRSRREQTPLSIAVIDIDHFKRI 513

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILAND 198
           ND +GH  GD  +  ++    ++ G  + +     R+GGEEFA     +    A  +   
Sbjct: 514 NDKYGHAGGDACLIHITG---IIQGMLLRLSDDLCRIGGEEFALILPNTDSDGAYHVVEA 570

Query: 199 LRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +R  IE S I +  G +I +TISAG+A      ++  + ++  AD+ LY AK+SGRN+V+
Sbjct: 571 IRDRIEKSPI-MFDGEAIQLTISAGLATSIITDEDHAAALLRLADEQLYAAKESGRNKVL 629


>gi|302383482|ref|YP_003819305.1| response regulator receiver modulated diguanylate cyclase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302194110|gb|ADL01682.1| response regulator receiver modulated diguanylate cyclase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 454

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 88/167 (52%), Gaps = 9/167 (5%)

Query: 102 QLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N         AF+       E +S++  DID+FK++ND FGH  GD+V
Sbjct: 287 EMAVTDALTGLHNRRYMAGQLQAFVGRAALGGEPVSVLVLDIDHFKKVNDGFGHDAGDEV 346

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   + +L           RLGGEEF     G++ ++A  +A  +R+ + ++   +  G 
Sbjct: 347 LREFAVRLATNVRAVDLPCRLGGEEFVVVMPGTTIEDAHRIAERIRRDVGSTPFRVMGGR 406

Query: 215 S-IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             + +TIS G+A      +    ++ RAD+ +Y AK SGR++V+  +
Sbjct: 407 EHLTVTISIGVAASTGPGDTPDALLKRADEGVYEAKASGRDKVIARA 453


>gi|229525716|ref|ZP_04415121.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|229339297|gb|EEO04314.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
          Length = 502

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 9/161 (5%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +QL+  D ++GLLN     S L    +++ L+I   DID FKQIND +GH +GD+VI ++
Sbjct: 345 AQLAARDPMTGLLNRRGMESFLKGKRHSQYLAIAVLDIDDFKQINDAYGHDMGDRVICYI 404

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            +Q+     +   V R GGEEF         EQ   I+      +  +S + +  G    
Sbjct: 405 GEQIENHIRSSDAVARFGGEEFVVYVTAKEKEQITRIMQRIFDAVCRDSPLILEPG---- 460

Query: 218 ITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            TIS GI   E         +   AD+ LYVAK SG+N++V
Sbjct: 461 FTISGGIEVVESTTDRSFEDLFKAADEKLYVAKTSGKNQLV 501


>gi|124515926|gb|EAY57435.1| Diguanylate cyclase [Leptospirillum rubarum]
          Length = 372

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 12/171 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHP 149
            R+ + +  D L+G L   A +S L           +  L +  FDID FK+IND  GH 
Sbjct: 186 TRLKKEALFDNLTGALLRKAGLSELTRRMAQTDRRPDVPLFVALFDIDDFKRINDQDGHQ 245

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+A +++             RLGGEEF     G+S  +   LA +LR+ IE  +I 
Sbjct: 246 SGDRVLAAVAEATRRTIRKGDTFIRLGGEEFLLVFSGNSFDQVRSLAENLRQRIEK-EIQ 304

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +S G    +T+S G+ +    E +S +++R+DQ +Y AK SG+N+ VC+ +
Sbjct: 305 LSDGSG--VTVSIGLTQYKIGESLSELLHRSDQLMYDAKASGKNQ-VCWQE 352


>gi|189010637|ref|ZP_03006404.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4076]
 gi|189403615|ref|ZP_03007156.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4486]
 gi|189404557|ref|ZP_03007505.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4501]
 gi|208819162|ref|ZP_03259482.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4042]
 gi|217329047|ref|ZP_03445128.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. TW14588]
 gi|188999250|gb|EDU68236.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4076]
 gi|189359663|gb|EDU78082.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4486]
 gi|189364944|gb|EDU83360.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4501]
 gi|208739285|gb|EDZ86967.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4042]
 gi|217318394|gb|EEC26821.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. TW14588]
 gi|320191929|gb|EFW66576.1| hypothetical protein ECoD_01340 [Escherichia coli O157:H7 str.
           EC1212]
 gi|320641804|gb|EFX11192.1| putative diguanylate cyclase YedQ [Escherichia coli O157:H7 str.
           G5101]
 gi|326342366|gb|EGD66147.1| hypothetical protein ECoA_03441 [Escherichia coli O157:H7 str.
           1044]
 gi|326344870|gb|EGD68617.1| hypothetical protein ECF_01448 [Escherichia coli O157:H7 str. 1125]
          Length = 558

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 545 KQAGRNRV 552


>gi|188590037|ref|YP_001922342.1| putative ggdef domain protein [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188500318|gb|ACD53454.1| diguanylate cyclase (GGDEF) domain protein [Clostridium botulinum
           E3 str. Alaska E43]
          Length = 695

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 9/172 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           +N +   ++ D L+G+ N +  ++   +         +  SI+  D+D+FKQINDN+GH 
Sbjct: 523 FNTVEHFAKYDSLTGMFNRNVILTQGENILNNRLETKQNFSIIMIDVDFFKQINDNYGHD 582

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-I 208
           +GD V+  +S  +        ++GR GGEEF       +  EA  +A+ +R  +EN +  
Sbjct: 583 IGDIVLKDVSSIIKNEIRNTDYLGRYGGEEFLVLLPNINLDEAKKIADRIRISVENYKYY 642

Query: 209 NISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++S     +T+S G+ E    E      + +AD+ALY+AK  GRN  + +S
Sbjct: 643 YLTSEKYNRVTLSLGVYEFNKNEFDFFEGVKKADKALYMAKSLGRNMAIEYS 694


>gi|167577724|ref|ZP_02370598.1| GGDEF domain protein [Burkholderia thailandensis TXDOH]
          Length = 489

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 86/171 (50%), Gaps = 16/171 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           +++L+  D L+GL N  A   +L     +       L+I+F DID+FK+ ND +GH VGD
Sbjct: 316 LARLAGTDSLTGLHNRRALDETLEREWRRAVGGERPLAILFVDIDHFKRYNDTYGHQVGD 375

Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +V+A +S    Q     G    V R GGEEF      +    A ++A  +R  +    I 
Sbjct: 376 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 433

Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                   +T+S G+A    +      I+ I+  ADQALY AK +GRNRVV
Sbjct: 434 HEGSEVGFVTVSVGVAVWQPDGARAPHIAAIVEAADQALYQAKAAGRNRVV 484


>gi|86607232|ref|YP_475995.1| response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86555774|gb|ABD00732.1| response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 332

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 13/181 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEK----LSIVFFDIDYF 139
           ++L      +  LS  D L+G LN  A   +L       G   +     L ++  D+DYF
Sbjct: 141 RQLRARNELLESLSLTDPLTGALNRRALDQALPHLLKQVGPREQARYRYLCLLMMDVDYF 200

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQ+ND +GH +GD V+  +  +L         + R GGEEF     G +       A  L
Sbjct: 201 KQVNDTYGHYIGDCVLQAIVGRLHNQLRPSSLLYRYGGEEFVCVTPGLNPARCHRYAESL 260

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257
           R+ I +  I ++   S+ +TIS G        P++    + +AD+ALY AK++GRNRV  
Sbjct: 261 RRAIASRPIEVAPQRSLPVTISIGGIVLSEDGPLAPEAALQKADEALYQAKQAGRNRVHL 320

Query: 258 F 258
           F
Sbjct: 321 F 321


>gi|117926705|ref|YP_867322.1| diguanylate cyclase [Magnetococcus sp. MC-1]
 gi|117610461|gb|ABK45916.1| diguanylate cyclase [Magnetococcus sp. MC-1]
          Length = 513

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 82/167 (49%), Gaps = 11/167 (6%)

Query: 107 DCLSGLLNHSAFISS-----LGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+GL N+  F+       + S   K   LS++  D+D+FK +ND  GH VGD V+  L
Sbjct: 335 DPLTGL-NNRRFLEEYERTIVASSQRKEMFLSVLMMDLDHFKMVNDTHGHQVGDAVLKSL 393

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L+        V R GGEEF              +A  +R+ +E  +IN+  G  +  
Sbjct: 394 AGVLMQQTRASDLVVRYGGEEFMVVLQNERPHMGNQIAEKIRETVERLKINVPGG-CLQK 452

Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           TIS G+AE          ++ +AD ALY AK+ GRNRV+  S  E  
Sbjct: 453 TISIGVAEFPTDGTDFDDVVEKADMALYRAKEQGRNRVISHSASETE 499


>gi|332531461|ref|ZP_08407365.1| diguanylate cyclase [Hylemonella gracilis ATCC 19624]
 gi|332039130|gb|EGI75552.1| diguanylate cyclase [Hylemonella gracilis ATCC 19624]
          Length = 406

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 89/191 (46%), Gaps = 14/191 (7%)

Query: 90  LKELFISYN----RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           L+E +   N    R+ + +  D L+GL N           ++   +    L++V  D+D+
Sbjct: 215 LREQYKKINALQARLREQAVRDPLTGLYNRRHLGEVLEPELARCRAARSSLAVVLIDVDH 274

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND  GH VGD V+  L+  +         V R GGEEF       S + AA  A  
Sbjct: 275 FKCINDTRGHAVGDLVLQSLAQLMQRHVRAQDMVFRYGGEEFLLLLPDISLETAAQRAEA 334

Query: 199 LRKIIENSQINISS--GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           LR     + + +S+   P + +T+S G+A    H E    +I  ADQALY AK+ GRNR 
Sbjct: 335 LRTAFGQTPMRVSAKEAPPLTVTLSCGVAAFPLHAEQGEALISCADQALYAAKRQGRNRT 394

Query: 256 VCFSDIENNTC 266
             +    +  C
Sbjct: 395 QVWQPGAHAVC 405


>gi|253998194|ref|YP_003050257.1| diguanylate cyclase [Methylovorus sp. SIP3-4]
 gi|313200264|ref|YP_004038922.1| diguanylate cyclase [Methylovorus sp. MP688]
 gi|253984873|gb|ACT49730.1| diguanylate cyclase [Methylovorus sp. SIP3-4]
 gi|312439580|gb|ADQ83686.1| diguanylate cyclase [Methylovorus sp. MP688]
          Length = 331

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 105/211 (49%), Gaps = 24/211 (11%)

Query: 67  ENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ 118
           +N  L +I +T   + G+  I+G +L +++ ++  +   +  D L+GLLN   F      
Sbjct: 107 KNKPLAVIGVTAPEVAGFDQITGMLL-QVYQNFIALINDNEQDTLTGLLNRKTFEHKVNK 165

Query: 119 -ISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            ++ + + +++          +  FDID+FK +ND +GH +GD+V+   + Q+       
Sbjct: 166 VVTRVQNRHQREDDALGLHYYMAIFDIDHFKLVNDRYGHLLGDEVLLLFAQQMTYSLRDH 225

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERC 228
             + R GGEEF A      +QE  ++ +  R+ +   +      P +  IT+SAG  E  
Sbjct: 226 DLLFRFGGEEFVAIFECHDQQEMQMVLDRFRERVAEFEF-----PQVGRITVSAGYTEIM 280

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +  S II RAD ALY AK  GRNRV  + 
Sbjct: 281 AYDVSSHIIDRADVALYYAKHHGRNRVCNYE 311


>gi|253700790|ref|YP_003021979.1| diguanylate cyclase with GAF sensor [Geobacter sp. M21]
 gi|251775640|gb|ACT18221.1| diguanylate cyclase with GAF sensor [Geobacter sp. M21]
          Length = 713

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 84/174 (48%), Gaps = 9/174 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           E+     R  QLS  D L+GL N     + L     +       L+++F D+D+FK  ND
Sbjct: 501 EVLEESERFEQLSVTDALTGLYNRRFLKNRLEEELNRSIRQGLNLTVIFIDLDFFKNYND 560

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD  +   ++ +         V R GGEEF A   G+S+ EA I+A  +R  IE
Sbjct: 561 LCGHLAGDDALRITAEIIKASLRDMDIVARYGGEEFCAVLPGTSKVEAMIVAERIRSEIE 620

Query: 205 NSQINISSG-PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             +    S  P + +T S G+A         + +++ +D ALY AK  GRNR+V
Sbjct: 621 REKFPGESEIPQVRLTASLGVASFPEDGRTFTALVHASDVALYEAKAGGRNRIV 674


>gi|77163852|ref|YP_342377.1| two component diguanylate cyclase [Nitrosococcus oceani ATCC 19707]
 gi|254435846|ref|ZP_05049353.1| HDOD domain family [Nitrosococcus oceani AFC27]
 gi|76882166|gb|ABA56847.1| response regulator receiver modulated diguanylate cyclase
           [Nitrosococcus oceani ATCC 19707]
 gi|207088957|gb|EDZ66229.1| HDOD domain family [Nitrosococcus oceani AFC27]
          Length = 661

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 10/182 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFFDIDYFKQI 142
           L +L ++  R+ Q++  D L+GL N    +  +      Y       S +  D+D+FK++
Sbjct: 459 LADLAVANRRLGQMAMTDSLTGLPNRRYAMERMEQAWAEYERNQTPFSCLVMDLDFFKRV 518

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH +GD V+  +++       +   + RLGGEEF      +   EA  +A  LR+ 
Sbjct: 519 NDQYGHEIGDSVLLEIANVFRGSARSSDIICRLGGEEFLVVCPHTVATEAFQVAERLRRA 578

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDI 261
           +E     +    S+ +++S G+A           +YR ADQALY AK++GRNR VC +  
Sbjct: 579 VEEHSWTMLDSTSV-LSVSIGLAASSEGMQHWNDLYRLADQALYQAKRNGRNR-VCMAPS 636

Query: 262 EN 263
            N
Sbjct: 637 PN 638


>gi|294339478|emb|CAZ87837.1| hypothetical protein; putative EAL and GGDEF domains; putative
           membrane protein [Thiomonas sp. 3As]
          Length = 780

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 10/167 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GLLN       L   +++        ++V FD+D+FK IND FGH  GD V
Sbjct: 357 RLANQDSLTGLLNRRGMGEYLQRAHDRARDHGIGYALVLFDLDHFKLINDGFGHAAGDAV 416

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  L         V R GGEEF      SS + A   A  LR++I ++++++  G 
Sbjct: 417 LQQVAHLLQTRVRKEDQVARWGGEEFLVLLPDSSLETAHATAEKLRELISHTRMSV-GGA 475

Query: 215 SIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFS 259
            + +T S G++      P+++  ++ + D ALY AK  GRNRV  F 
Sbjct: 476 ELRLTASFGVSAWEPGGPLTSAELLGQCDSALYNAKAGGRNRVKQFE 522


>gi|170722098|ref|YP_001749786.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619]
 gi|169760101|gb|ACA73417.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619]
          Length = 533

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 91/168 (54%), Gaps = 9/168 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFG 147
           +EL  S  ++ +L+  D ++GL N   F   L       + L+++  DID FKQ+ND+ G
Sbjct: 92  RELRSSQAQLERLAHYDTITGLPNRVLFQQQLADAILQGDGLAVLMLDIDGFKQVNDSLG 151

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD ++   + + +    +   V RLGG+EF     G+  Q +  +A+ LR +     
Sbjct: 152 HAMGDLLLQQATARFLQELASADRVCRLGGDEFVFMLRGTQGQVSHQVAHLLRCLQRPFD 211

Query: 208 INISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRN 253
           +N   G +  +T S G+A RC  H E + +++  AD A+Y AK+SGRN
Sbjct: 212 LN---GSTALVTGSIGLA-RCPQHGEDVGSLLRHADTAMYAAKESGRN 255


>gi|160875204|ref|YP_001554520.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160860726|gb|ABX49260.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|315267397|gb|ADT94250.1| diguanylate cyclase [Shewanella baltica OS678]
          Length = 325

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 79/162 (48%), Gaps = 10/162 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS----YNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
            L+  D L+G LN     + L      Y ++    S++  DID+FK +NDNFGH +GD++
Sbjct: 164 HLANTDELTGALNRKQLKTKLEQSVYEYQQQQIPASLLLIDIDFFKTVNDNFGHIIGDQL 223

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   S  +         + R GGEEF      +  + AAI+A DLR+ IE          
Sbjct: 224 LNKFSQHIQKKIRKDDLLFRFGGEEFLILLPNTQFESAAIVAEDLRRSIEEQHF---LDQ 280

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              +T S G+A+    + + T +   D  LY AK +GRN VV
Sbjct: 281 HTQVTCSIGVADLRQADTLDTWLKTCDNLLYSAKNAGRNCVV 322


>gi|83716605|ref|YP_439319.1| GGDEF domain-containing protein [Burkholderia thailandensis E264]
 gi|83650430|gb|ABC34494.1| GGDEF domain protein [Burkholderia thailandensis E264]
          Length = 506

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 86/171 (50%), Gaps = 16/171 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           +++L+  D L+GL N  A   +L     +       L+I+F DID+FK+ ND +GH VGD
Sbjct: 333 LARLAGTDSLTGLHNRRALDETLEREWRRAVGGERPLAILFVDIDHFKRYNDTYGHQVGD 392

Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +V+A +S    Q     G    V R GGEEF      +    A ++A  +R  +    I 
Sbjct: 393 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 450

Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                   +T+S G+A    +      I+ I+  ADQALY AK +GRNRVV
Sbjct: 451 HEGSEVGFVTVSVGVAVWQPDGARAPHIAAIVEAADQALYQAKAAGRNRVV 501


>gi|310822354|ref|YP_003954712.1| hypothetical protein STAUR_5113 [Stigmatella aurantiaca DW4/3-1]
 gi|309395426|gb|ADO72885.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 656

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 15/169 (8%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           QL+  D L+G+ N     + +         Y   LSI+  D+DYFK++ND  GH  GD+ 
Sbjct: 456 QLTMTDPLTGVPNRRHLFTRMEQELARAERYQTPLSILMVDVDYFKRLNDAAGHRAGDET 515

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS-QINISSG 213
           +  + D L         + R GGEEF      +S+ +A  +   LR+ + ++  +  SS 
Sbjct: 516 LRKVCDVLRTRVRKVDTLARYGGEEFMILLPQTSKADALEVGEKLRRAVADAPSLTSSSQ 575

Query: 214 PSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           P+ H+TIS G+A    +  H++    ++  +D ALY +K+ GRN+V  +
Sbjct: 576 PTGHVTISIGVACYPVDATHQD---MLMDCSDSALYASKRGGRNKVTAY 621


>gi|271499827|ref|YP_003332852.1| diguanylate cyclase [Dickeya dadantii Ech586]
 gi|270343382|gb|ACZ76147.1| diguanylate cyclase [Dickeya dadantii Ech586]
          Length = 354

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 10/187 (5%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SI 131
            +L+G ++     +L     ++ ++S++D ++ L N   +   L S  E         ++
Sbjct: 169 PILVGLVTYRTAIKLAEHKRQLREISQLDGMTRLYNRHHWEQLLKSEFELCVHCPQVATL 228

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              DID+FK+IND+FGH VGD VI  LS  +          GR GG+EF      ++  E
Sbjct: 229 ALLDIDHFKRINDSFGHHVGDDVILLLSRGIKSTLRQSDITGRFGGDEFGMVLPQTATAE 288

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250
           A  +   LR+ +   Q++    P++ ++IS G+ E     E     +  AD ALY AK +
Sbjct: 289 AEHIIQQLREYLHGIQLH--QAPALQVSISVGLVEFHPGMEDYRVWLKAADTALYQAKDN 346

Query: 251 GRNRVVC 257
           GR   VC
Sbjct: 347 GRGCTVC 353


>gi|218689950|ref|YP_002398162.1| putative diguanylate cyclase [Escherichia coli ED1a]
 gi|218427514|emb|CAR08409.2| putative diguanylate cyclase [Escherichia coli ED1a]
          Length = 564

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 551 KQAGRNRV 558


>gi|162145995|ref|YP_001600453.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161784569|emb|CAP54106.1| putative signalling protein, GGDEF family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 390

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 4/134 (2%)

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
           +  + +S++ FDID+FK IND  GH +GD V+   +  +    G    +GRLGGEEFA  
Sbjct: 247 TVGQPVSLLIFDIDHFKSINDIHGHAMGDAVLKLFARAMGEEVGQEAIMGRLGGEEFAML 306

Query: 184 ALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRAD 241
             GS    A A   N  R+    +  +    P +H+T+S G+ E R  +  +  ++  AD
Sbjct: 307 LPGSDRATARAAGQNIARRFTALAAQDFR--PPLHVTVSVGLTEVRTSRMTLDDLLAAAD 364

Query: 242 QALYVAKKSGRNRV 255
            ALY AK  GRNR+
Sbjct: 365 GALYQAKTLGRNRI 378


>gi|194439573|ref|ZP_03071646.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 101-1]
 gi|194421482|gb|EDX37496.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 101-1]
 gi|332343681|gb|AEE57015.1| cellulose synthesis regulatory protein [Escherichia coli UMNK88]
          Length = 558

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYEFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 545 KQAGRNRV 552


>gi|114562278|ref|YP_749791.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114333571|gb|ABI70953.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 576

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 93/180 (51%), Gaps = 19/180 (10%)

Query: 94  FISYNRISQLSRIDCLSGLLNH--------SAFISS--LGSYNEKLSIVFFDIDYFKQIN 143
           ++  N+  + ++ D L+G+ N         + FI +  LG   E  S++  D+D FK IN
Sbjct: 400 WMQRNQFMKQAQRDGLTGIFNRRTGQEMAENEFIQAQMLG---ESFSVLLMDLDLFKNIN 456

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD V+  ++  +  +        R+GGEEFA      +E  A   A  +R  I
Sbjct: 457 DQYGHATGDWVLKKVTHVIGDMLKPTHIFTRMGGEEFAIFMPKQTEDIAVEFAEQIRNAI 516

Query: 204 ENSQINIS-SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260
            N  IN   SG    +T+S G++    K+ +S   +I RAD ALY AK +GRN V+C++D
Sbjct: 517 AN--INTRFSGHDFTVTVSCGVSS-VDKDDLSLDPLIRRADLALYKAKHNGRNCVICYND 573


>gi|319786513|ref|YP_004145988.1| diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1]
 gi|317465025|gb|ADV26757.1| diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1]
          Length = 496

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 19/171 (11%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++ +R D L+G+ N      +L        +    LSI F D+D FKQIND  GH VGD
Sbjct: 325 LTEQARRDPLTGVYNRMQLEEALEREFSAAVAAGHPLSIAFVDLDDFKQINDRHGHLVGD 384

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+   +  L  +  +   V R GGEEF      S+E  A  +   +      + + +  
Sbjct: 385 QVLRQFAQTLQRMLRSTDLVARYGGEEFLVVLAHSNEAAATRVLQRILDETARTPMAVVD 444

Query: 213 GPSIHITISAGIAER--------CHKEPISTIIYRADQALYVAKKSGRNRV 255
           G  +++T SAG+A R        C +    +++  ADQALY+AK+ GRN+V
Sbjct: 445 GHPLYVTFSAGVATRDGEHGQFTCPR----SLVQAADQALYLAKRRGRNQV 491


>gi|304410681|ref|ZP_07392299.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|304351165|gb|EFM15565.1| diguanylate cyclase [Shewanella baltica OS183]
          Length = 640

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 16/148 (10%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++ FD D+FK+INDNFGH  GD+ +  ++    V+ G    +GR+GGEEF      +  
Sbjct: 496 SVIIFDADHFKKINDNFGHEQGDRALLTIASAGKVLTGNKDLIGRIGGEEFLILLPNTDA 555

Query: 190 QEAAILANDLRKIIENSQINISSGPS-IHITISAGIA--------ERCHKEP-ISTIIYR 239
           + A  LA+ L+  I  S++     P+ + +T+SAG+A        E  +++   ++++ R
Sbjct: 556 ERACELAHQLQAHI--SRLGAEDLPAELKLTVSAGVATLAPQTNTENTYQDKDFASLLKR 613

Query: 240 ADQALYVAKKSGRNRVVCFSDIENN-TC 266
           AD ALY AK +GRN   C    +N  TC
Sbjct: 614 ADDALYEAKNAGRN---CVKAAKNEATC 638


>gi|300818624|ref|ZP_07098832.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
 gi|300528796|gb|EFK49858.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
          Length = 558

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 545 KQAGRNRV 552


>gi|222109122|ref|YP_002551387.1| GGDEF domain-containing protein [Agrobacterium vitis S4]
 gi|221738396|gb|ACM39261.1| GGDEF domain-containing protein [Agrobacterium vitis S4]
          Length = 245

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 86/173 (49%), Gaps = 9/173 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNF 146
           L +L  +Y  +   SR D L+G L  SAF+  L   +++    +++F D+D+FK IND +
Sbjct: 75  LNKLADAYETLRIQSRRDGLTGALTRSAFMEDLALTSQRGGTGALLFLDLDHFKSINDRY 134

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+ +      L          GRLGGEEF         ++      ++R+ I   
Sbjct: 135 GHATGDEALRRTGLVLARYKSQSDVAGRLGGEEFGLFQSDLKFEQMRDRCEEVREEIARI 194

Query: 207 QINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVV 256
            ++  SG  + I+ S G    CH +P   +S  +  AD+ LY AK  GRNRVV
Sbjct: 195 VLHAPSGSQVRISASIGA---CHCDPGFDLSDCLKAADKNLYQAKALGRNRVV 244


>gi|161504899|ref|YP_001572011.1| hypothetical protein SARI_03028 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866246|gb|ABX22869.1| hypothetical protein SARI_03028 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 308

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 117/250 (46%), Gaps = 20/250 (8%)

Query: 32  SIFFSIFIATVIFIANIFLFYIGLTPF-----------YGLEYILVENLSLVIISITISL 80
           S+   +FI ++ F ANI  F +   P             GL  + +  L +V I+I   +
Sbjct: 58  SLLSVLFIGSIAFSANIVAFTLYALPSVALCLWLNGNEQGLRILYLMALPMVGIAIQHII 117

Query: 81  LLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFF 134
              Y   +  ++ +L      ++ LS +D L+GL N     S L +     S    ++  
Sbjct: 118 QKRYDNFAQQLMFKLLAERETLNSLSMLDPLTGLYNRRGLQSRLDTLQALDSHEHYVLLL 177

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK  ND++GH +GD+ +  +S  +     +   V R GGEEF      +  Q+A  
Sbjct: 178 DIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTATEPQQARA 237

Query: 195 LANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            A  +R+ + + +I      S+  ++T+S GIA    +  I   I +AD+ALY AK  GR
Sbjct: 238 TAERIRQKVYDLKIPHMFNESVATNVTVSIGIAPLADRN-IGDAIEKADKALYEAKHLGR 296

Query: 253 NRVVCFSDIE 262
           N ++   D+ 
Sbjct: 297 NHILVSGDLH 306


>gi|117919610|ref|YP_868802.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. ANA-3]
 gi|117611942|gb|ABK47396.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. ANA-3]
          Length = 878

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 90/174 (51%), Gaps = 10/174 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148
           S  +++ L+  D L+ L N    +  L          N +L+ VF D+D FK IND+FGH
Sbjct: 444 SEAQLAHLAYFDPLTHLPNRMKLMMQLKQELRHAKRLNAQLATVFIDVDLFKHINDSFGH 503

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQ 207
            +GD+++  L+ +L         + R+GG+EF A   G  S ++AA   N LR++ E   
Sbjct: 504 SIGDEMLVELAKRLRSQLQEQDVLSRIGGDEFVALISGIQSHEDAAAAINQLRQVFEQPF 563

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + +S+G  + +T S G++          T++  AD A+Y AK  GRN    +++
Sbjct: 564 V-VSTGDHLRLTASMGVSIYPDDGSNADTLLRNADAAMYRAKSEGRNNFAFYTE 616


>gi|330806706|ref|YP_004351168.1| diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327374814|gb|AEA66164.1| Putative diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 700

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 79/157 (50%), Gaps = 8/157 (5%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+GL N +A+       ++    +   L +   D+D+FK+INDN+GH  GD+V+  +
Sbjct: 542 IDPLTGLPNRAAWSERLEHEVAQWQQHGNSLLLAMLDLDHFKRINDNYGHLAGDRVLKLI 601

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L        F+ R GGEEF      +     A LA  LR  IE    +    P + +
Sbjct: 602 ASVLRKRLRGGDFIARFGGEEFVLLVPNTPLVAGAKLAEALRLAIEACPFHFKGEP-VTV 660

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T+S G+      E    ++ RADQALY AK SGRN V
Sbjct: 661 TVSIGLTAFKPGEHSDLVLKRADQALYRAKNSGRNHV 697


>gi|260219441|emb|CBA26286.1| hypothetical protein Csp_E33740 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 530

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 14/180 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           S+L  L     ++  +SR D L+G+ N           +S L  + + LS++  D+D+FK
Sbjct: 348 SLLLVLHEQVRKLESMSRTDSLTGIANRRKLDERLPLEMSRLARHADPLSLLLIDVDHFK 407

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           + ND +GHP GD  +  ++  L           R GGEEF  A L  +  EA  LA   +
Sbjct: 408 KYNDLYGHPEGDVALKKVASVLAACSRQQDLAARFGGEEF--AILLPNTDEAGALAVAEK 465

Query: 201 KIIENSQINI---SSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRV 255
            ++E S++ I    S  S  +++S G       +P     +I +AD+ALYVAK+ GR R 
Sbjct: 466 IMLEMSKLEIPHAQSPTSPRLSVSVGGTTWSEVQPGGAGALISQADKALYVAKRDGRMRA 525


>gi|144901349|emb|CAM78213.1| GGDEF domain protein [Magnetospirillum gryphiswaldense MSR-1]
          Length = 288

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 91/184 (49%), Gaps = 13/184 (7%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIV 132
           L  G  + S+ +E++ +      L+ +D L+GL N  +  + L    ++       LS+ 
Sbjct: 108 LSFGATAQSLEREVWKA------LATVDPLTGLSNRQSMRTHLMGERDRAIRQKLPLSLA 161

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK+IND FGH  GDKV+  ++  L         V R GGEEF     G++ +  
Sbjct: 162 LADIDHFKKINDGFGHSQGDKVLRAVAAVLKATVRPYDVVYRYGGEEFLLCLPGTNAENG 221

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           A++   +R  I   ++    G  I +T + GIAE      +   I  AD+ALY  K  GR
Sbjct: 222 ALVLERIRAAIAALELTDDRGTPIPVTATFGIAEINADLSVDDAIELADRALYDGKLGGR 281

Query: 253 NRVV 256
           N+VV
Sbjct: 282 NKVV 285


>gi|82776357|ref|YP_402706.1| hypothetical protein SDY_1050 [Shigella dysenteriae Sd197]
 gi|309789418|ref|ZP_07684008.1| cellulose synthesis regulatory protein [Shigella dysenteriae 1617]
 gi|81240505|gb|ABB61215.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|308922812|gb|EFP68329.1| cellulose synthesis regulatory protein [Shigella dysenteriae 1617]
          Length = 558

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 545 KQAGRNRV 552


>gi|300920176|ref|ZP_07136625.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
 gi|300412798|gb|EFJ96108.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
          Length = 558

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 545 KQAGRNRV 552


>gi|238923509|ref|YP_002937025.1| hypothetical protein EUBREC_1129 [Eubacterium rectale ATCC 33656]
 gi|238875184|gb|ACR74891.1| hypothetical protein EUBREC_1129 [Eubacterium rectale ATCC 33656]
          Length = 1021

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 26/172 (15%)

Query: 106 IDCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +D L+G  NH AF     S +     KL  V  D+D FK +ND  GH VGD+V++     
Sbjct: 143 LDSLTGTYNHLAFENKCTSLIRQKGTKLLFVMLDVDDFKIVNDTLGHNVGDRVLSQTGQV 202

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILANDLRKII----ENSQINISS 212
           L    G    VGRLGG+EFAA   G  + +A       L+  L+ II     ++ I +++
Sbjct: 203 LKEAVGANGIVGRLGGDEFAAIVFGLEDSDAVDEFCVKLSGRLKNIIFDMEYSASIGMTT 262

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           G    +T                + Y ADQA+Y +K+ G+NR+  F+ I  N
Sbjct: 263 GDDRELT-------------FKDLYYEADQAMYYSKRQGKNRISFFNSIRKN 301


>gi|145298745|ref|YP_001141586.1| GGDEF/EAL protein [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142851517|gb|ABO89838.1| GGDEF/EAL protein [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 625

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 84/158 (53%), Gaps = 6/158 (3%)

Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GLLN    + SL +Y     + ++VF D+D FK +NDN+GH  GD+++  ++ +L 
Sbjct: 221 DSLTGLLNRYGLMKSLEAYCGMGGRFALVFMDLDNFKLVNDNYGHKAGDRLLERVAGRLK 280

Query: 164 VVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
            V    + + RLGG+EF A   L  S   A  +A DL        + +S  P + I  S 
Sbjct: 281 QVCPRDVELARLGGDEFTALVPLAHSSDRAQEVA-DLMLSQMTKPLQLSGVPEVTIGGSI 339

Query: 223 GIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           GIA      +   T+I RAD A+Y AK+ GR R   F+
Sbjct: 340 GIAIYPDDADDGDTLITRADMAMYQAKQMGRLRWQRFT 377


>gi|24375197|ref|NP_719240.1| extracellular solute-binding protein [Shewanella oneidensis MR-1]
 gi|24349982|gb|AAN56684.1|AE015804_6 extracellular solute-binding protein, family 3/GGDEF domain protein
           [Shewanella oneidensis MR-1]
          Length = 461

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 6/170 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFG 147
           ++L  + ++++ L++ D L+G+ N   F + L    +    L+++ FDID FK IND +G
Sbjct: 289 RQLEDANHKLTLLAQTDSLTGIHNRHYFFNQLSDTQDLASSLTLIVFDIDDFKSINDTYG 348

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD  I  ++  +  V    M   R+GGEEFA  A   S Q +  LA  + + I   +
Sbjct: 349 HSAGDNAICLITTCVREVLEPEMQFARIGGEEFAILARDKSAQASQQLAKRICQQIAQKK 408

Query: 208 INISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVV 256
           + ++S   I +T+S G A   +  P +   +  AD  +Y AK+ G+N+ V
Sbjct: 409 LPLASNTLISLTVSLGCA--FYPTPDNPFTLNAADSLMYEAKRKGKNQAV 456


>gi|88799699|ref|ZP_01115274.1| GGDEF domain protein [Reinekea sp. MED297]
 gi|88777593|gb|EAR08793.1| GGDEF domain protein [Reinekea sp. MED297]
          Length = 315

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 10/178 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L++L  S   +S++++ D L+ + N   FI ++         Y    S    D+D FK I
Sbjct: 131 LQQLESSVETLSEIAQTDELTHVANRRGFIQTVERELDRCRRYETPASFALLDLDLFKPI 190

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRK 201
           ND +GH VGD+ +  ++D +         +GR+GG+EF A  L  +EQE+A+ + + +R 
Sbjct: 191 NDRYGHQVGDQALIHVADVVSSHLRPYDTLGRIGGDEF-AIFLRETEQESAVDVCDRIRL 249

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +E+S   I + P + + +S G+  R +      +   AD ALY AK  GRN VV F 
Sbjct: 250 AVESSPFLIENQPVV-LRLSFGVTTRTNATGFEQLYKEADIALYRAKSRGRNCVVLFD 306


>gi|150389941|ref|YP_001319990.1| diguanylate cyclase with PAS/PAC sensor [Alkaliphilus
           metalliredigens QYMF]
 gi|149949803|gb|ABR48331.1| diguanylate cyclase with PAS/PAC sensor [Alkaliphilus
           metalliredigens QYMF]
          Length = 330

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 13/165 (7%)

Query: 103 LSRIDCLSGLLNHSAFISSLGS----YNEK--------LSIVFFDIDYFKQINDNFGHPV 150
           LS ID LSGL NH  F   L      Y  +         S++ FD+D FK IND  GH +
Sbjct: 166 LSAIDSLSGLYNHRHFFEELNKAFELYTRQKEEGSSHGFSVILFDVDNFKVINDKHGHLM 225

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VI  + + +     +     R GG+EFA     +S ++A  +A  +R  I+N+ I  
Sbjct: 226 GDVVIRQIGEIMKRNTRSTDSCFRYGGDEFAILLPNTSIEDARRIAEKMRVAIKNTAI-A 284

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S    + IT+S G+A  C  + +  +  ++D+ LY +K +G+N V
Sbjct: 285 SEHSELKITVSLGVASCCEAKSVKDLFRKSDEKLYCSKNTGKNMV 329


>gi|331653368|ref|ZP_08354373.1| cellulose synthesis regulatory protein [Escherichia coli M718]
 gi|331049466|gb|EGI21538.1| cellulose synthesis regulatory protein [Escherichia coli M718]
          Length = 564

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 551 KQAGRNRV 558


>gi|227820812|ref|YP_002824782.1| putative transmembrane response regulator protein with GGDEF domain
           [Sinorhizobium fredii NGR234]
 gi|227339811|gb|ACP24029.1| putative transmembrane response regulator protein with GGDEF domain
           [Sinorhizobium fredii NGR234]
          Length = 454

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 97/189 (51%), Gaps = 11/189 (5%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIV 132
           + LL     S + EL  +  R+ +L+R D L+G+ N    + +L      G      +++
Sbjct: 257 TFLLELRDRSRVAELADANARLERLARTDPLTGISNRRWMMETLDHLWSDGMERRGCAML 316

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQE 191
             DID FK +ND  GH  GD+ +  ++  +   V      V R GGEEF     G  E+E
Sbjct: 317 MCDIDEFKNLNDRLGHAEGDRCLVKVAGIIQSSVRRNRDHVARYGGEEFLIVLPGVDERE 376

Query: 192 AAILANDLRKIIENSQI-NISSGPSIHITISAGIA-ERCHKE--PISTIIYRADQALYVA 247
           A  +   +R  +E + + N +S    ++T+S G+A +R   E  P   +  +AD ALY+A
Sbjct: 377 AIAMGERIRGSVEAASLPNPASRVLPYVTLSIGVAAQRPGDEIIPPERLQNQADAALYLA 436

Query: 248 KKSGRNRVV 256
           K++GRNRVV
Sbjct: 437 KQAGRNRVV 445


>gi|297584311|ref|YP_003700091.1| response regulator receiver modulated diguanylate cyclase [Bacillus
           selenitireducens MLS10]
 gi|297142768|gb|ADH99525.1| response regulator receiver modulated diguanylate cyclase [Bacillus
           selenitireducens MLS10]
          Length = 454

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 13/171 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI +   +D L+G  N +   + L           +  S+   DID+FK++ND +GH  G
Sbjct: 143 RIDKAVLVDELTGTFNRTYMKTKLHEMIAWYKRTEDPGSVAILDIDHFKKVNDRYGHATG 202

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+   +D +         V R GGEEF      +  ++A  +   +RK +E++  +  
Sbjct: 203 DQVLKTFADIMREETRESDIVCRYGGEEFVVLLPNTCPEDAETVIERVRKHVESTPHD-- 260

Query: 212 SGPSI-HITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           SG  I H+T S GI        +P   ++++ADQALY AK  GRNR+  F 
Sbjct: 261 SGEGIFHVTFSTGITFISSGDADP-EQLVHQADQALYQAKNDGRNRIRHFD 310


>gi|15831948|ref|NP_310721.1| hypothetical protein ECs2694 [Escherichia coli O157:H7 str. Sakai]
 gi|168752213|ref|ZP_02777235.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4113]
 gi|168758269|ref|ZP_02783276.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4401]
 gi|168778100|ref|ZP_02803107.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4196]
 gi|168801731|ref|ZP_02826738.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC508]
 gi|195939262|ref|ZP_03084644.1| hypothetical protein EscherichcoliO157_23048 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208810635|ref|ZP_03252511.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4206]
 gi|208816680|ref|ZP_03257800.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4045]
 gi|209398052|ref|YP_002271072.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4115]
 gi|254793606|ref|YP_003078443.1| putative diguanylate cyclase [Escherichia coli O157:H7 str.
           TW14359]
 gi|291283132|ref|YP_003499950.1| Cellulose synthesis regulatory protein [Escherichia coli O55:H7
           str. CB9615]
 gi|20140592|sp|Q8XB92|YEDQ_ECO57 RecName: Full=Cellulose synthesis regulatory protein
 gi|13362162|dbj|BAB36117.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187766826|gb|EDU30670.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4196]
 gi|188013902|gb|EDU52024.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4113]
 gi|189354892|gb|EDU73311.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4401]
 gi|189376152|gb|EDU94568.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC508]
 gi|208725151|gb|EDZ74858.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4206]
 gi|208731023|gb|EDZ79712.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4045]
 gi|209159452|gb|ACI36885.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4115]
 gi|209766718|gb|ACI81671.1| hypothetical protein ECs2694 [Escherichia coli]
 gi|209766720|gb|ACI81672.1| hypothetical protein ECs2694 [Escherichia coli]
 gi|209766722|gb|ACI81673.1| hypothetical protein ECs2694 [Escherichia coli]
 gi|209766724|gb|ACI81674.1| hypothetical protein ECs2694 [Escherichia coli]
 gi|209766726|gb|ACI81675.1| hypothetical protein ECs2694 [Escherichia coli]
 gi|254593006|gb|ACT72367.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str.
           TW14359]
 gi|290763005|gb|ADD56966.1| Cellulose synthesis regulatory protein [Escherichia coli O55:H7
           str. CB9615]
 gi|320647162|gb|EFX15995.1| putative diguanylate cyclase YedQ [Escherichia coli O157:H- str.
           493-89]
 gi|320652447|gb|EFX20745.1| putative diguanylate cyclase YedQ [Escherichia coli O157:H- str. H
           2687]
 gi|320658049|gb|EFX25811.1| putative diguanylate cyclase YedQ [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658620|gb|EFX26314.1| putative diguanylate cyclase YedQ [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 564

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 551 KQAGRNRV 558


>gi|126463917|ref|YP_001045030.1| diguanylate cyclase [Rhodobacter sphaeroides ATCC 17029]
 gi|126105728|gb|ABN78258.1| diguanylate cyclase with GAF sensor [Rhodobacter sphaeroides ATCC
           17029]
          Length = 325

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 86/163 (52%), Gaps = 9/163 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q++  D L+G +    +++++            + +IV FD+D+FK IND  GH VGD
Sbjct: 160 LRQIALSDALTGAMTRRGWLAAVEKEMARGARQGTQAAIVLFDVDHFKTINDTHGHAVGD 219

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  L+ + ++  G    +GR+GGEEFA     +   EA  LA  LR+   ++ I + +
Sbjct: 220 AVLQALTRRCLLHLGPADALGRIGGEEFAVLVPDAGLPEAMELAERLRRSFSDAPIEV-A 278

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254
           G ++ +T S G+           + +  AD+ LY AK +GRNR
Sbjct: 279 GHALRVTASFGVQGLDGDTGTAGSWLAAADRRLYEAKAAGRNR 321


>gi|325914450|ref|ZP_08176796.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325539340|gb|EGD10990.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 326

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 15/178 (8%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL---------GSYNEKLSIVFFDIDYFKQIND 144
           F +Y  +   ++ D L+GL N   F   +            N+++ +   DID+FK++ND
Sbjct: 135 FQNYRSLLDDAQRDALTGLRNRKTFDDVILRLFAGGADAPANDQVWLGIVDIDHFKRVND 194

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD+V+  ++  +   F     + R GGEEF     G     A  L    R  + 
Sbjct: 195 TFGHLYGDEVLLLVAQLMQRAFRQDDLLFRFGGEEFVIVLRGVDRDVAVSLFERFRLAVA 254

Query: 205 NSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                    P +  +T+S GI E  H   IS ++  AD+ALY AK+ GRNR V +S++
Sbjct: 255 EHVF-----PQVGQVTLSTGIVELTHGRLISQLLDEADKALYWAKQHGRNRAVVYSEL 307


>gi|303246773|ref|ZP_07333050.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
 gi|302491790|gb|EFL51670.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
          Length = 531

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 84/171 (49%), Gaps = 16/171 (9%)

Query: 98  NRISQLSRI---DCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
            RI +  R+   D L+GL N           +++        S +  D+D+FK +ND  G
Sbjct: 355 GRIEEAERLSVQDALTGLYNRRFLFSGGMKLLAASQRSGRPCSCLMLDVDHFKTVNDTHG 414

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+V+  L   L         V R GGEEFA    G+   +AA+LA   R  +  + 
Sbjct: 415 HTAGDQVLVHLGRVLSGCVRKSDLVARYGGEEFAVLLTGADVAQAAMLAERFRHALSGAP 474

Query: 208 INISSGPSIHITISAGIAE-RCHKE----PISTIIYRADQALYVAKKSGRN 253
             + +  ++ +T+S G+A  R   E    P+  ++ RAD+ALYVAK +GRN
Sbjct: 475 CMVEN-RALVVTVSIGVAALRDQVEYGETPLDDLLARADKALYVAKAAGRN 524


>gi|293608824|ref|ZP_06691127.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829397|gb|EFF87759.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325121409|gb|ADY80932.1| two-component system, PleD related family, response regulator
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 420

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 90/173 (52%), Gaps = 10/173 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEK--LSIVFFDIDYFKQINDN 145
           L I  + +  LS+ D L+ + N   F      +      EK  L+++F DID+FK  ND 
Sbjct: 237 LRIEASELLHLSQQDALTNISNRRTFDEMFDFFYYRAKQEKRPLAVLFIDIDFFKNYNDF 296

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH +GDKVI+ ++  +        FV R GGEEF      +  Q A  +A ++ K IE 
Sbjct: 297 YGHQMGDKVISSIAAAIKNSIRHVDFVARYGGEEFVVLLPKTPAQGAYAVAANIYKAIER 356

Query: 206 SQI-NISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             I + +S  S H+TIS G  +     K     +I+ ADQALY AK+ GRN++
Sbjct: 357 QAIPHAASLVSKHVTISLGFTVYTEGFKVNQEKLIHAADQALYRAKQLGRNQI 409


>gi|258620822|ref|ZP_05715857.1| sensory box/GGDEF family protein [Vibrio mimicus VM573]
 gi|258587020|gb|EEW11734.1| sensory box/GGDEF family protein [Vibrio mimicus VM573]
          Length = 628

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 89/175 (50%), Gaps = 20/175 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDIDYFKQINDNFGH 148
           NR+ +LS  D L+ L N   F  ++     K+          +   DID+FK+IND FGH
Sbjct: 459 NRLRELSEKDALTDLWNRRKFDQAIHLECAKVRRYPNLAQTCLAIVDIDHFKRINDKFGH 518

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+V+  +++ +        F+ R+GGEEFA     +S +EA  + N +R  I ++Q 
Sbjct: 519 SEGDRVLRGVANSIQEQLRESDFIARIGGEEFAIIFPYTSIEEAERVLNRVRLYIASTQP 578

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSDIE 262
           +        +TIS G+ + C    I    Y RAD ALY +K SGRN++   +  E
Sbjct: 579 H-------DVTISGGVTDLC---AIPDQSYKRADLALYESKSSGRNQISILTQAE 623


>gi|213585868|ref|ZP_03367694.1| hypothetical protein SentesTyph_33212 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 182

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 83/163 (50%), Gaps = 10/163 (6%)

Query: 107 DCLSGLLNHSAFISSLGS----YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N  A           Y E     S++  D+DYFK +ND FGH  GD+V++  +
Sbjct: 13  DPLTRLYNRGALFEKASRLAKRYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAA 72

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +          GR+GGEEF     G+++ +A  +A  +R+ I + +I ++   ++ I+
Sbjct: 73  GLIGSTIRAHDIAGRVGGEEFCIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRIS 132

Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            S GI  AE         +   AD+ LY AK+SGRNR +C SD
Sbjct: 133 ASMGISSAEEYGDYDFEQLQSLADKRLYYAKQSGRNR-ICASD 174


>gi|114154898|sp|Q32HJ0|YEDQ_SHIDS RecName: Full=Cellulose synthesis regulatory protein
          Length = 564

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 551 KQAGRNRV 558


>gi|42522950|ref|NP_968330.1| GGDEF domain-containing protein [Bdellovibrio bacteriovorus HD100]
 gi|39574146|emb|CAE79323.1| GGDEF domain protein [Bdellovibrio bacteriovorus HD100]
          Length = 408

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 81/158 (51%), Gaps = 9/158 (5%)

Query: 105 RIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           R D L+G  N  ++   +  Y        + ++++  DID+FK+IND++GH +GD V+  
Sbjct: 239 RKDHLTGAHNRRSYDEQIRRYLQLHEIDKDPMTLIIMDIDFFKKINDSYGHDIGDFVLQE 298

Query: 158 LSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
               +   F     F+ RLGGEEFA    G   Q A  +A +    I   ++ +     I
Sbjct: 299 CVRLIQESFSREEDFIARLGGEEFAVILPGCDAQAAVRMAEEAMNRI-RKEVFVHEKFEI 357

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             T+S GIAE    E    +  RAD+ALY +K++GRN+
Sbjct: 358 RFTVSLGIAEVMPGEKADALYKRADEALYESKQTGRNK 395


>gi|116623704|ref|YP_825860.1| response regulator receiver modulated diguanylate cyclase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116226866|gb|ABJ85575.1| response regulator receiver modulated diguanylate cyclase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 325

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 87/181 (48%), Gaps = 9/181 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
            + +EL  +   + + +  D L+GLLN ++ +  L             +S++  D+D FK
Sbjct: 143 DLQEELLKAREALREQATHDGLTGLLNRTSILEKLDDELSRAARDGSSVSVLMVDLDRFK 202

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND  GH  GD V+   S +L         VGR GGEEF     G  +  A + A  LR
Sbjct: 203 SVNDTQGHLAGDAVLREASSRLRSASRRYDSVGRYGGEEFLVVLPGCEKAAAELQAERLR 262

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + I  +     S P + +T S G+A   H  P   +I  AD ALY AK  GRNRVV  ++
Sbjct: 263 EAIGGTPFRADSRP-LAMTCSIGLACSSHCAP-EDLIREADDALYQAKAGGRNRVVAHTE 320

Query: 261 I 261
           +
Sbjct: 321 L 321


>gi|320668518|gb|EFX35345.1| putative diguanylate cyclase YedQ [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 558

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 545 KQAGRNRV 552


>gi|189405270|ref|ZP_03007744.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC869]
 gi|189371044|gb|EDU89460.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC869]
          Length = 558

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 545 KQAGRNRV 552


>gi|288958709|ref|YP_003449050.1| two-component response regulator modulated diguanylate cyclase
           [Azospirillum sp. B510]
 gi|288911017|dbj|BAI72506.1| two-component response regulator modulated diguanylate cyclase
           [Azospirillum sp. B510]
          Length = 464

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 9/176 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           + L  +Y +   ++  D L+G+ N     + L    E+       +S++ FDID+FK +N
Sbjct: 280 ERLRSNYEQSLSMALTDSLTGVFNRRYVNAHLPRLLERAIDSHKPVSVLMFDIDHFKVVN 339

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH +GD+V+  +S +      T   V RLGGEEF      +  + A I+A  LR  I
Sbjct: 340 DTYGHAIGDEVLREVSARSSRNLRTFDLVARLGGEEFIVILPDTDGEAALIVAERLRSRI 399

Query: 204 ENSQINISSGP-SIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
            ++   +SS    I++T+S GI+      +    +I RAD+ALY AK+SGRN V+ 
Sbjct: 400 ADTPFAVSSERGEINVTVSIGISIGGRLGDTAEGLIRRADEALYEAKRSGRNCVIA 455


>gi|89108787|ref|AP_002567.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           W3110]
 gi|90111360|ref|NP_416465.2| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|170081599|ref|YP_001730919.1| diguanylate cyclase [Escherichia coli str. K-12 substr. DH10B]
 gi|238901160|ref|YP_002926956.1| putative diguanylate cyclase [Escherichia coli BW2952]
 gi|253773096|ref|YP_003035927.1| diguanylate cyclase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|20140530|sp|P76330|YEDQ_ECOLI RecName: Full=Probable diguanylate cyclase YedQ; Short=DGC;
           AltName: Full=Cellulose synthesis regulatory protein
 gi|1736626|dbj|BAA15784.1| predicted diguanylate cyclase [Escherichia coli str. K12 substr.
           W3110]
 gi|87082007|gb|AAC75022.2| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|169889434|gb|ACB03141.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238862233|gb|ACR64231.1| predicted diguanylate cyclase [Escherichia coli BW2952]
 gi|253324140|gb|ACT28742.1| diguanylate cyclase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|260448932|gb|ACX39354.1| diguanylate cyclase [Escherichia coli DH1]
          Length = 564

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 551 KQAGRNRV 558


>gi|298528055|ref|ZP_07015459.1| diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511707|gb|EFI35609.1| diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 486

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 76/135 (56%), Gaps = 3/135 (2%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS++  D+D+FK +ND +GH  GD V+  + + LV       F  R GGEEF      ++
Sbjct: 345 LSLIMLDLDHFKTLNDTYGHVTGDMVLRKIGEILVDTVRETDFPARYGGEEFVILLPETT 404

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYV 246
           E++A +L   +R+ I  ++  +  G    IT S G+A  +     P  T++ +ADQALY+
Sbjct: 405 EEQAWLLGQRIRQKIGQTEFEV-QGKKFSITASLGVASIKPGPLTPKDTLVEQADQALYL 463

Query: 247 AKKSGRNRVVCFSDI 261
           +K +GRN V   +D+
Sbjct: 464 SKFNGRNMVCTSADV 478


>gi|209548401|ref|YP_002280318.1| diguanylate cyclase with PAS/PAC sensor [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209534157|gb|ACI54092.1| diguanylate cyclase with PAS/PAC sensor [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 622

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 9/166 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  L+  D L+G+ N   F        + +      LS++  D+D+FK  ND +GH  G
Sbjct: 447 KMKGLADTDALTGIANRRVFNEAISEEFARVRRAESSLSLLLIDVDHFKAYNDTYGHLEG 506

Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D  +  + + L  +   P     R GGEEFA    G+    A  LA  LR  +    I  
Sbjct: 507 DNCLRMIGEILRSIAKRPSDLAARFGGEEFAILLPGTDRDGALRLARMLRSALHRRAIPH 566

Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
           S      +T+S G+A  C +    + ++  ADQALY AKK GR+RV
Sbjct: 567 SESSKAIVTVSIGVANICDRFATPAELVSAADQALYAAKKHGRDRV 612


>gi|157161011|ref|YP_001458329.1| hypothetical protein EcHS_A1625 [Escherichia coli HS]
 gi|157066691|gb|ABV05946.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli HS]
          Length = 296

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S            L ++  DID FK +ND +GH +GD V+  L
Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      ++++EA      + ++++N  I  S G + +I
Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEGHN-NI 247

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291


>gi|299531333|ref|ZP_07044743.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298720740|gb|EFI61687.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 473

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 6/136 (4%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            +  +I+  D+D+FKQIND+FGH  GD+++   S  L  V      VGR+GGEEFA A  
Sbjct: 337 GQPFAILMLDLDHFKQINDSFGHAGGDQLLRSFSQTLSQVLRAQDIVGRMGGEEFAVALP 396

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE----RCHKEPISTIIYRAD 241
                 A  +A  + + I   ++ ++   ++  T+S G+      + H+  +  ++  AD
Sbjct: 397 KVDATAAQEIAKRINRAIRELRVPMNDK-TMSATVSIGLVHTSRLQAHQS-LDLLLQDAD 454

Query: 242 QALYVAKKSGRNRVVC 257
           QALY AK SGR+RVV 
Sbjct: 455 QALYDAKASGRDRVVA 470


>gi|262193544|ref|YP_003264753.1| diguanylate cyclase [Haliangium ochraceum DSM 14365]
 gi|262076891|gb|ACY12860.1| diguanylate cyclase [Haliangium ochraceum DSM 14365]
          Length = 303

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 9/172 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y  I +++ ID L+G+ N   F       I+    +   L+++ FDID+FKQIND  GH 
Sbjct: 127 YEEIYRMTIIDGLTGVHNKRYFVEFLEREIARCARHQRPLTLLMFDIDHFKQINDTHGHL 186

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  +S +L         + R GGEEFAA    +           +R+++      
Sbjct: 187 TGDYVLKEMSRRLRERIRKEELLARYGGEEFAAVLPETDHVGGMTFGEQIRQLVGGEPFE 246

Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
              G    +TIS G+     +   +   I  AD  LY AK+SGRNRV+   +
Sbjct: 247 Y-EGDRFQVTISVGVHTLYGQSLDVKGFIKHADDNLYRAKRSGRNRVIGMDN 297


>gi|254457390|ref|ZP_05070818.1| response regulator PleD [Campylobacterales bacterium GD 1]
 gi|207086182|gb|EDZ63466.1| response regulator PleD [Campylobacterales bacterium GD 1]
          Length = 292

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 87/159 (54%), Gaps = 15/159 (9%)

Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N +  +       S     N+KLS++  DID+FK +ND  GH  GD V+  ++
Sbjct: 138 DQLTGLYNRNHLVLEGERKFSRAFRKNDKLSVMMIDIDHFKIVNDTHGHLTGDLVLKEVA 197

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L+    T  F  R GGEEF     G S+++A   A  LRK IE  ++N +    I +T
Sbjct: 198 SLLIQDNRTEDFSARFGGEEFIVVLDGCSKEDAKEKAETLRKKIE--ELNPA---DIKVT 252

Query: 220 ISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
            S GI+E  +KE  S  +++  AD ALY AK SGRN VV
Sbjct: 253 ASFGISE-LNKEHNSFESLLRAADSALYSAKSSGRNCVV 290


>gi|116248992|ref|YP_764833.1| GGDEF domain-containing regulatory protein [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115253642|emb|CAK12035.1| putative transmembrane GGDEF domain regulatory protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 428

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 103/197 (52%), Gaps = 20/197 (10%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKL------SI 131
           + LL     S L EL  + +++  L+R D L+G+ N  + + +L   ++E L      ++
Sbjct: 228 TFLLELRDRSRLAELTDANSQLELLARTDPLTGVANRRSMMETLHYFWSEDLKRTSGAAM 287

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF-----VGRLGGEEFAAAALG 186
           +  DID FK +NDN GH  GD+ +     ++  +  + M      V R GGEEF     G
Sbjct: 288 LMCDIDDFKHLNDNLGHAEGDRCLV----KVAGIIQSSMRDERDQVARYGGEEFLVFLPG 343

Query: 187 SSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIST---IIYRADQ 242
           S EQEA ++A  +R  +E + + N +S     +T+S G+A       + +   +  +AD 
Sbjct: 344 SDEQEAGVIAERIRSRVEAASLPNPTSRVGPWVTVSIGVAILMQNSGLVSAEHMQRQADA 403

Query: 243 ALYVAKKSGRNRVVCFS 259
           ALY+AKK+GRN VV  +
Sbjct: 404 ALYLAKKTGRNCVVVHA 420


>gi|325121080|gb|ADY80603.1| response regulator PleD [Acinetobacter calcoaceticus PHEA-2]
          Length = 423

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 81/159 (50%), Gaps = 11/159 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL-----SIVFF--DIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+  L    F+ S+    EK+     +  FF  D+D+FKQ+NDN+GH +GD+ +    
Sbjct: 262 DELTSSLTRRQFLQSVRLLQEKVQKENKTSAFFMLDVDHFKQVNDNYGHQIGDRALQTCV 321

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +  +      +GR GGEEFA     ++++ A  LA  +R  I    I I     I I 
Sbjct: 322 TTIQNILHPHDLLGRFGGEEFAIFIADTTKESAFELAEQIRIKISQQPIYIYGKLPIFIQ 381

Query: 220 ISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S GI   +   H+  I ++   AD ALY AK+ GRNRV
Sbjct: 382 VSIGISLYSPSSHRA-IESLFKEADDALYQAKRQGRNRV 419


>gi|262164933|ref|ZP_06032671.1| sensory box/GGDEF family protein [Vibrio mimicus VM223]
 gi|262027313|gb|EEY45980.1| sensory box/GGDEF family protein [Vibrio mimicus VM223]
          Length = 628

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 88/175 (50%), Gaps = 20/175 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDIDYFKQINDNFGH 148
           NR+ +LS  D L+ L N   F  ++     K+          +   DID+FK+IND FGH
Sbjct: 459 NRLRELSEKDALTDLWNRRKFDQAIHLECAKVRRYPNLAQTCLAIVDIDHFKRINDKFGH 518

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+V+  ++  +        F+ R+GGEEFA     +  +EA  + N +R  I ++Q 
Sbjct: 519 SEGDRVLRGVATSIQEQLRESDFIARIGGEEFAIIFPYTLIEEAERVLNRVRLYIASTQP 578

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSDIE 262
           +        +TIS G+ + C   PI    Y RAD ALY +K SGRN++   +  E
Sbjct: 579 H-------DVTISGGVTDLC---PIPDQSYKRADLALYESKSSGRNQISILTKAE 623


>gi|167828385|ref|ZP_02459856.1| putative transmembrane transcriptional sensor regulator
           [Burkholderia pseudomallei 9]
          Length = 489

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 84/171 (49%), Gaps = 16/171 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++L+  D L+GL N  A   +L          +  L+I+F DID+FK+ ND +GH VGD
Sbjct: 316 LARLAGTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGD 375

Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +V+A +S    Q     G    V R GGEEF      +    A ++A  +R  +    I 
Sbjct: 376 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 433

Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                   +T+S G+A    +      I  I+  ADQALY AK  GRNRVV
Sbjct: 434 HEGSEVGFVTVSVGVAVWHPDGASAPHIDAIVEAADQALYQAKADGRNRVV 484


>gi|189424637|ref|YP_001951814.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
 gi|189420896|gb|ACD95294.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
          Length = 631

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 17/174 (9%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           E   +   I +L+  D L+GL N        +  ++  G YNE ++I+F D+D FK++ND
Sbjct: 181 ERRAAAEEIERLAFFDSLTGLPNRVLLKDRLAQLLTRAGRYNEMVAILFIDLDRFKEVND 240

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAILANDL 199
             GH  GD+++  +S++L     +   V RLGG+EF     G +E++     AA L   L
Sbjct: 241 TLGHGTGDQLLQVVSERLTACLRSCDTVARLGGDEFVVLLPGITERDCVGDIAAKLLQSL 300

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            K ++     + +  SI I++          + +ST+   AD A+Y AK+ GRN
Sbjct: 301 CKPVQLDAREVFTSGSIGISLWP-----IDGDSVSTLFKNADTAMYHAKEQGRN 349


>gi|113969504|ref|YP_733297.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-4]
 gi|113884188|gb|ABI38240.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-4]
          Length = 878

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 90/174 (51%), Gaps = 10/174 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148
           S  +++ L+  D L+ L N    +  L          N +L+ VF D+D FK IND+FGH
Sbjct: 444 SEAQLAHLAYFDPLTHLPNRMKLMMQLKQELRHAKRLNAQLATVFIDVDLFKHINDSFGH 503

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQ 207
            +GD+++  L+ +L         + R+GG+EF A   G  S ++AA   N LR++ E   
Sbjct: 504 SIGDEMLVELAKRLRSQLQEQDVLSRIGGDEFVALISGIQSHEDAAAAINQLRQVFEQPF 563

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + +S+G  + +T S G++          T++  AD A+Y AK  GRN    +++
Sbjct: 564 V-VSTGDHLRLTASMGVSIYPDDGSNADTLLRNADAAMYRAKSEGRNNFAFYTE 616


>gi|23006783|ref|ZP_00048946.1| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 308

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 91/199 (45%), Gaps = 8/199 (4%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
           V++   +++L   + G  L+        +++LSR D L+GL N   F         +   
Sbjct: 86  VVVLCGLTVLFSLLLGQQLRRSTAMQAELTRLSRTDSLTGLPNRRHFEEFFERAWKAAAR 145

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAA 183
             + L+++  D+D+FK  ND FGH VGD V+  ++  L      P     R+GGEEF   
Sbjct: 146 ERKPLALLIVDVDHFKGYNDRFGHAVGDTVLKGIAHSLTASLHRPQDLPARVGGEEFVVL 205

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
             G+    A  +A  +   +    +  S      +T+S G+A    K     +  RAD +
Sbjct: 206 LPGTDRAGALQVAERIHAAVAGFALPSSGIACGTLTVSIGLAVGNGKGATRDLYARADAS 265

Query: 244 LYVAKKSGRNRVVCFSDIE 262
           LY AK+ GRN+  C  + +
Sbjct: 266 LYEAKRGGRNQTKCADEAD 284


>gi|332308438|ref|YP_004436289.1| periplasmic/7TM domain sensor diguanylate cyclase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332175767|gb|AEE25021.1| periplasmic/7TM domain sensor diguanylate cyclase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 631

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 98/190 (51%), Gaps = 20/190 (10%)

Query: 92  ELFISYNRISQLSR-------IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           EL I+   +S+++R       +D L+G+ N   F       +        +L +   DID
Sbjct: 443 ELEIALRELSEINRELEEKNTLDALTGIRNRRYFDKKYLAEVRRSRRERTELVVAMIDID 502

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILA 196
           +FK++ND  GH VGD  I F++++L      P   V R GGEEF+     +  Q A  L 
Sbjct: 503 HFKKVNDEHGHLVGDDCIKFVAERLKKTLKRPSDDVCRYGGEEFSVIMPSTDIQGAHDLL 562

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNR 254
           + LR  I+N+ +  S+G ++++T+S G+A      ++    +I  ADQ LY AK +GRN 
Sbjct: 563 DHLRLEIQNTPV-YSAGVAVNLTVSIGLASAIMDPQQSEDVLIGFADQLLYQAKNNGRNC 621

Query: 255 VVC--FSDIE 262
           +V   F D E
Sbjct: 622 IVAQKFPDSE 631


>gi|316933799|ref|YP_004108781.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
 gi|315601513|gb|ADU44048.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
          Length = 405

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 80/155 (51%), Gaps = 6/155 (3%)

Query: 106 IDCLSGLLNHSAFISSLGS----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +D L+GLLN   F + + +      E  +++  D+D+FK IND+FGH VGD V+  +   
Sbjct: 249 LDHLTGLLNRRGFEAEIAAPMRRAPEGAALILCDVDHFKSINDSFGHDVGDVVLQEIGAI 308

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L         VGR GGEEFA     +S  +A   A  LR+ I NS+  I    S  +T S
Sbjct: 309 LRRTARKGDLVGRWGGEEFAVFLPDASRSDAVECAERLRQTIANSR--IPGLDSRSVTAS 366

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+A        + +   AD  LY+AK +GR+R V
Sbjct: 367 FGVATIREVGDWAALYKLADSRLYLAKAAGRDRTV 401


>gi|262173913|ref|ZP_06041590.1| sensory box/GGDEF family protein [Vibrio mimicus MB-451]
 gi|261891271|gb|EEY37258.1| sensory box/GGDEF family protein [Vibrio mimicus MB-451]
          Length = 628

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 89/175 (50%), Gaps = 20/175 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDIDYFKQINDNFGH 148
           NR+ +LS  D L+ L N   F  ++     K+          +   DID+FK+IND FGH
Sbjct: 459 NRLRELSEKDALTDLWNRRKFDQAIHLECAKVRRYPNLAQTCLAIVDIDHFKRINDKFGH 518

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+V+  +++ +        F+ R+GGEEFA     +S +EA  + N +R  I ++Q 
Sbjct: 519 SEGDRVLRGVANSIQEQLRESDFIARIGGEEFAIIFPYTSIEEAERVLNRVRLYIASTQP 578

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSDIE 262
           +        +TIS G+ + C    I    Y RAD ALY +K SGRN++   +  E
Sbjct: 579 H-------DVTISGGVTDLC---AIPDQSYKRADLALYESKSSGRNQISILTQAE 623


>gi|209919377|ref|YP_002293461.1| hypothetical protein ECSE_2186 [Escherichia coli SE11]
 gi|209912636|dbj|BAG77710.1| conserved hypothetical protein [Escherichia coli SE11]
          Length = 564

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKMCQTHQHPF 430

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 551 KQAGRNRV 558


>gi|149378217|ref|ZP_01895932.1| diguanylate cyclase [Marinobacter algicola DG893]
 gi|149357507|gb|EDM46014.1| diguanylate cyclase [Marinobacter algicola DG893]
          Length = 573

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 93/189 (49%), Gaps = 14/189 (7%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEK 128
           T++  L + +  + +++    + +++L+RID L+GL N      +L           N  
Sbjct: 378 TMTDTLAHSTRELERKVAQRTDELNRLARIDALTGLKNRRGLDEALDEEIQRAKRQNNTG 437

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
             +++ DID+FK IND  GH  GD ++  ++  L          GR GG+EF        
Sbjct: 438 FGLIWLDIDHFKAINDELGHQAGDDILCRVALWLKAGVRPYDHPGRWGGDEFVVVLSPCD 497

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247
           E     +A  +R+ IE    +I +G  + +++   +   C   + + TI+ +ADQALY  
Sbjct: 498 EDTLCQIAARIRETIERD--SIRTGTPVTVSVGGYL---CQPGDDVDTILRQADQALYRV 552

Query: 248 KKSGRNRVV 256
           K+ GRN+V+
Sbjct: 553 KQQGRNKVL 561


>gi|118593567|ref|ZP_01550944.1| GGDEF domain protein [Stappia aggregata IAM 12614]
 gi|118433785|gb|EAV40445.1| GGDEF domain protein [Stappia aggregata IAM 12614]
          Length = 307

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 112/244 (45%), Gaps = 15/244 (6%)

Query: 24  PHTFMIYFSIFFSIFIATV----IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS 79
           P   +++  + + +F  T+    I +  + +   GL     L+   ++ ++LV I + IS
Sbjct: 61  PVPALLWCGLVYPVFPTTILTLCIGVWGLVILSNGLGDSASLQ---LDVMTLVSIRLGIS 117

Query: 80  L--LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVF 133
           L  L   +   + +       R+  L+  D L+ +LN +AF       L       +++ 
Sbjct: 118 LVALAPIMLSCVTQNRNALVGRLQYLATHDQLTNVLNRNAFREEAARRLALGTSGFALLM 177

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK +ND  GH  GD V+     ++         +GR+GGEEFA       + +A 
Sbjct: 178 VDLDDFKAVNDTHGHATGDTVLVNFVHRVKNTLPPGSLLGRMGGEEFAVLIPDCRQVDAV 237

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSG 251
             A ++R+ +    +    G  + +T S G+   E    + + T++  AD+  Y+AKK G
Sbjct: 238 AEAENIRQSVGTEPVPAGDGKEVRVTASLGVVAVEHGDADSLDTLLAEADRLCYLAKKRG 297

Query: 252 RNRV 255
           RNRV
Sbjct: 298 RNRV 301


>gi|77465514|ref|YP_355017.1| diguanylate cyclase with GAF sensor [Rhodobacter sphaeroides 2.4.1]
 gi|77389932|gb|ABA81116.1| diguanylate cyclase with GAF sensor [Rhodobacter sphaeroides 2.4.1]
          Length = 326

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 86/163 (52%), Gaps = 9/163 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q++  D L+G +    +++++            + +IV FD+D+FK IND  GH VGD
Sbjct: 161 LRQIALSDALTGAMTRRGWLAAVEKEMARGARQGTQAAIVLFDVDHFKAINDTHGHAVGD 220

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  L+ + ++  G    +GR+GGEEFA     +   EA  LA  LR+   ++ I + +
Sbjct: 221 AVLQALTRRCLLHLGPADALGRIGGEEFAVLVPDAGLPEAMELAERLRRSFSDAPIEV-A 279

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254
           G ++ +T S G+           + +  AD+ LY AK +GRNR
Sbjct: 280 GQALRVTASFGVQGLDGDTGNAGSWLAAADRRLYEAKAAGRNR 322


>gi|331677837|ref|ZP_08378512.1| cellulose synthesis regulatory protein [Escherichia coli H591]
 gi|331074297|gb|EGI45617.1| cellulose synthesis regulatory protein [Escherichia coli H591]
          Length = 564

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 551 KQAGRNRV 558


>gi|260221858|emb|CBA30840.1| hypothetical protein Csp_C25570 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 600

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 9/175 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L ++  R+  LS +D L+G+ N   F        + L    + L++V  D+D+FK+ N
Sbjct: 419 RQLQVANERLEALSMVDGLTGIANRRHFDQVLHKEWTRLERAGQPLALVMLDVDWFKRYN 478

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+FGH  GD+ +  ++  +  V      V R GGEEF   A G+   +A  +A      +
Sbjct: 479 DHFGHQAGDECLRAVAQAISGVSRASDLVARYGGEEFVIIAPGTDGPQALQMAQRACDAV 538

Query: 204 ENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256
               +         +T+S G+A       + +  ++ +AD ALY AK  GRNRVV
Sbjct: 539 RALGMPHPLAYEAVVTVSCGVAVTVPGPDDSLENLLGQADDALYEAKAQGRNRVV 593


>gi|229590226|ref|YP_002872345.1| putative GGDEF domain signaling protein [Pseudomonas fluorescens
           SBW25]
 gi|229362092|emb|CAY48994.1| putative GGDEF domain signalling protein [Pseudomonas fluorescens
           SBW25]
          Length = 388

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 12/164 (7%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDK 153
           ++ ++ D L+GL+N  AF        E+       L  +  D+D+FKQIND +GH  GD+
Sbjct: 226 TRAAQTDELTGLMNRRAFFEHAQVLYEQCRHNRQPLCALMMDMDHFKQINDTYGHQAGDQ 285

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  +   +   F      GRLGGEEFA     +S   A  +A  L K I      ++S 
Sbjct: 286 VLRQIGGVISASFRQADVYGRLGGEEFAVLLPNTSLDTARTIAEQLVKAIS----GLASE 341

Query: 214 PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           P   ++ S G+A      + +  ++  AD+ALY AK  GRN+V 
Sbjct: 342 PVHGLSASLGVASTHTQDQDLHGLMNTADKALYRAKAQGRNQVA 385


>gi|288573662|ref|ZP_06392019.1| diguanylate cyclase with PAS/PAC sensor [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288569403|gb|EFC90960.1| diguanylate cyclase with PAS/PAC sensor [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 565

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 9/167 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            ++ +++ ID L+G+LN   F       +      L ++ FD+D FK +ND  GH  GD+
Sbjct: 400 KKLEKMASIDKLTGILNRQRFEFLLQEKMDRKRLPLCLIMFDLDRFKDLNDARGHLEGDR 459

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +   S+ +          GR GG+EF  A L     ++ I+A DLRK I ++  +   G
Sbjct: 460 ALVLASEAVSGRLRMGDLFGRWGGDEFMVA-LEQDLDKSLIVAEDLRKRICDALGDGFQG 518

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
               +T S G+A    +  +  +   AD+ALY AKK GRNRVV F D
Sbjct: 519 ----VTASFGLALWNGRASLENLSNMADEALYRAKKDGRNRVVVFDD 561


>gi|254457525|ref|ZP_05070953.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207086317|gb|EDZ63601.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 491

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 16/183 (8%)

Query: 80  LLLGYISGSILKELFISYNRISQLS---RIDCLSGLLNHSA---FISSLGSYNEKLSIVF 133
           LL+ +I      +L  +Y  I +L      D L+G+ N ++   F+ +   +  K +I+F
Sbjct: 310 LLIYFIFTRYSNKLISAYENIQELEIAVDTDALTGINNRTSLDSFLKANVKHENKYAIIF 369

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK IND +GH VGD ++  L++ ++       F  R GGEEF      +S Q A 
Sbjct: 370 LDIDHFKNINDTYGHDVGDTILKELANIILKSIRLDDFFARWGGEEFVIVLKTNSIQNAV 429

Query: 194 ILANDLRKIIENSQINISSG---PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
                  KI +N + NI S     SI +T S G+      + +  ++ RAD+ LY AK +
Sbjct: 430 -------KITKNIRENIHSTLFHNSIPVTCSFGVTMIDRPDDLDMVLKRADKLLYDAKDA 482

Query: 251 GRN 253
           GR+
Sbjct: 483 GRD 485


>gi|85714378|ref|ZP_01045366.1| diguanylate cyclase/phophodiesterase [Nitrobacter sp. Nb-311A]
 gi|85698825|gb|EAQ36694.1| diguanylate cyclase/phophodiesterase [Nitrobacter sp. Nb-311A]
          Length = 761

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 13/169 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           RIS L+R D L+ L N  +F       + S    +   +++F D+D FKQIND  GHP G
Sbjct: 319 RISHLARFDSLTDLPNRLSFRDEIERLLESPTDRSRLSALLFIDLDQFKQINDTLGHPCG 378

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQIN 209
           D+++  ++D+L  +     FV R GG+EF      + S E+ AA+    + ++ E  +++
Sbjct: 379 DRLLCIVADRLRGMLRPEDFVARFGGDEFVVFQQNIQSPEEAAALSRRIVERLTERYEVD 438

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 + I  S GIA          ++  AD ALY AK  GR    CF
Sbjct: 439 RH---LVEIGASIGIALTSPGATADNLLKHADMALYRAKADGRG-TFCF 483


>gi|254418028|ref|ZP_05031752.1| GGDEF domain protein [Brevundimonas sp. BAL3]
 gi|196184205|gb|EDX79181.1| GGDEF domain protein [Brevundimonas sp. BAL3]
          Length = 453

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 9/165 (5%)

Query: 102 QLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N         A +         ++++  DID+FK +ND FGH  GD+V
Sbjct: 286 EMAVTDALTGLHNRRYMTGQLRALVGRAAHGGATVAVLVLDIDHFKSVNDGFGHDAGDEV 345

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +A  + +L           R+GGEEF     G+S ++A I+A  +R+ I ++   +  G 
Sbjct: 346 LAEFAVRLATNVRAVDVPCRMGGEEFVVVMPGASLEDARIVAERIRRDIASAPFRVMGGK 405

Query: 215 S-IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
             + ITIS G+A      +    ++ RAD+ +Y AK  GRN+V+ 
Sbjct: 406 ELLTITISIGVAATTGAGDTPEALLKRADEGVYEAKAGGRNKVIA 450


>gi|186473821|ref|YP_001861163.1| diguanylate cyclase [Burkholderia phymatum STM815]
 gi|184196153|gb|ACC74117.1| diguanylate cyclase [Burkholderia phymatum STM815]
          Length = 511

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 9/166 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQINDNFG 147
           S  RI  L+R D L+GL N   F   L         S   + ++ + D+D FK +NDN G
Sbjct: 335 SEARILHLARHDPLTGLANRREFHDRLKLMLSAAPASAASRAAVFYLDLDGFKNVNDNLG 394

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+V+  ++ +L           RLGG+EFA     S+    A +A  + +++    
Sbjct: 395 HGAGDEVLTMVAARLEQTLRDGELAARLGGDEFAVIVRDSTPLVVATIARRIIRVVSRP- 453

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             +++G ++ I  S GIA     + +  +I RAD+ALY AK++G+ 
Sbjct: 454 YRLAAGRTVSIGTSIGIALSAPDDAVDALISRADEALYAAKQAGKG 499


>gi|120597606|ref|YP_962180.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|146294255|ref|YP_001184679.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
 gi|120557699|gb|ABM23626.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|145565945|gb|ABP76880.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
 gi|319427617|gb|ADV55691.1| diguanylate cyclase [Shewanella putrefaciens 200]
          Length = 362

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 123/247 (49%), Gaps = 12/247 (4%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIF--LFYIGLTPFYGLEYILVENLSLVIISI 76
           L +  P    I+  +F+ +  A +I +  +   +++I   P+Y     ++     + +  
Sbjct: 114 LATIPPSFASIFKPLFYKLIQALIIIVFFLICDIWFIDYEPYYLYSDEMISLFRHINVLG 173

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------L 129
             +LL G +S +  + +  +   +  ++  D L+GL+N  +  + +     +       +
Sbjct: 174 ACALLAG-VSYAYSQIVMSAITALRNVANTDELTGLINRRSLTALIDREAARTLRTHASM 232

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S+V  DIDYFK+IND++GH  GD V+  +++ L  V      V R GGEEF      +  
Sbjct: 233 SLVLCDIDYFKRINDSYGHAAGDHVLVNVANLLQGVLREYDVVARWGGEEFLLLLPNTDI 292

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            EA  +A  LR+I+  S ++     +I +T++ G+A    +   ST+  RAD+ALY  K+
Sbjct: 293 IEAMKVAERLREIVACSHLSFEE-QTIPVTMTLGVAVLGDENWHSTLA-RADEALYRGKR 350

Query: 250 SGRNRVV 256
            GRN VV
Sbjct: 351 QGRNCVV 357


>gi|308048602|ref|YP_003912168.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
 gi|307630792|gb|ADN75094.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
          Length = 381

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 11/169 (6%)

Query: 98  NRISQLSR---IDCLSGLLN------HSAFISSLGSYN-EKLSIVFFDIDYFKQINDNFG 147
           NR   L R    D L+GL N      H    S     N + L++V  D+D+FK++ND +G
Sbjct: 197 NRACNLERNALKDPLTGLYNRAFLQQHLMLTSERAKRNGQPLAVVMLDLDFFKRVNDRYG 256

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD+V+A  S +L         + R GGEEF      +S +EA  +   L + I+   
Sbjct: 257 HGVGDRVLAAFSQRLNAGLRAGDLLARYGGEEFCLVLSQTSLEEAKTVLAKLHERIQAEP 316

Query: 208 INISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++ +   I +T SAG+   +   +    ++ RAD  L  AK++GR+R 
Sbjct: 317 FDVGAEHPISLTFSAGVCVLQGQDDTPQALLERADHWLLHAKRAGRDRT 365


>gi|226358101|ref|YP_002787840.1| metal dependent phosphohydrolase [Deinococcus deserti VCD115]
 gi|226319744|gb|ACO47738.1| putative metal dependent phosphohydrolase [Deinococcus deserti
            VCD115]
          Length = 1152

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 14/166 (8%)

Query: 100  ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
            + + SR D L+G+ N      +L + + +       LS++  DID+FK +ND F HPVGD
Sbjct: 989  LQRQSREDGLTGVYNRRYIEEALATEHSRHRQTHRTLSLLMIDIDHFKAVNDKFSHPVGD 1048

Query: 153  KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN---SQIN 209
            +V+  ++            VGR GGEEF      ++  +A  +A  +R+++E     +I+
Sbjct: 1049 EVLRRIAKLFKATCRAHDLVGRYGGEEFLIILPDTTVPQAIEVAERIRRLVEEYPWREIH 1108

Query: 210  ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                P +H+T+S G+  R        ++   D+ LY AK  GRNRV
Sbjct: 1109 ----PKLHVTLSLGVCGRMDVANHERLLSLVDEKLYEAKHGGRNRV 1150


>gi|261254626|ref|ZP_05947159.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str.
           FRIK966]
          Length = 564

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 551 KQAGRNRV 558


>gi|182417814|ref|ZP_02949128.1| ggdef/hd domain protein [Clostridium butyricum 5521]
 gi|237669067|ref|ZP_04529051.1| ggdef/hd domain protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182378277|gb|EDT75809.1| ggdef/hd domain protein [Clostridium butyricum 5521]
 gi|237657415|gb|EEP54971.1| ggdef/hd domain protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 558

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 82/169 (48%), Gaps = 9/169 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  +  ID L+ L NH  F  SL          N  +S++F DIDYFK  ND +GH  G
Sbjct: 186 KLENMINIDGLTELYNHRYFCDSLAEEIKIGEKENSPVSMIFIDIDYFKNYNDIYGHQKG 245

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-I 210
           D V+  +   +    G      R GGEEFA     ++E  A  +A  LRK IEN+     
Sbjct: 246 DYVLKKIGKIIKSSIGNQHISARYGGEEFAIILPDTTEDMAVNIAESLRKKIENTYFEGE 305

Query: 211 SSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCF 258
            + P+  +T+S G++    K      +I  AD ALY AK   +NRV  +
Sbjct: 306 ENQPNGKLTVSMGVSVYPDKARSDIELIKSADDALYRAKFFYKNRVETY 354


>gi|168232352|ref|ZP_02657410.1| AdrA protein [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194468530|ref|ZP_03074514.1| AdrA protein [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194454894|gb|EDX43733.1| AdrA protein [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205333325|gb|EDZ20089.1| AdrA protein [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 370

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
            LSL +I +   LL  ++S     +L     R+  +S  D ++G+ N   +   L +   
Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               ++ + +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EF
Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 292

Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237
           A    G+   ++AI A  + ++ E  + + +   P + + IS G+A      P++  I  
Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343

Query: 238 YR-----ADQALYVAKKSGRNRV 255
           YR     AD ALY AK +GRNR 
Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366


>gi|70733599|ref|YP_257239.1| diguanylate cyclase [Pseudomonas fluorescens Pf-5]
 gi|68347898|gb|AAY95504.1| diguanylate cyclase, putative [Pseudomonas fluorescens Pf-5]
          Length = 727

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSL----GSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q + ID L+GL N +A+   L    G + +    L +   D+D+FK+INDN+GH  GDKV
Sbjct: 565 QKALIDPLTGLPNRAAWSERLEHEVGQWQQHGNSLLLAMLDLDHFKRINDNYGHLAGDKV 624

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +++ L        F+ R GGEEF      +       +   LR  IE    +    P
Sbjct: 625 LKIIANVLRKRLRGSDFIARFGGEEFVLLLPNTPWPVGVRIVEALRAAIEACPFHFKGEP 684

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT+S G++     +    +I RADQALY AK +GRNRV
Sbjct: 685 -VTITVSVGLSAFKAGDRSDLVIKRADQALYRAKDAGRNRV 724


>gi|56414460|ref|YP_151535.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|168237493|ref|ZP_02662551.1| AdrA protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194734843|ref|YP_002113415.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197363381|ref|YP_002143018.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|204927093|ref|ZP_03218295.1| AdrA protein [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|56128717|gb|AAV78223.1| adrA protein [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. ATCC 9150]
 gi|194710345|gb|ACF89566.1| AdrA protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197094858|emb|CAR60391.1| adrA protein [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. AKU_12601]
 gi|197289544|gb|EDY28907.1| AdrA protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204323758|gb|EDZ08953.1| AdrA protein [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 370

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
            LSL +I +   LL  ++S     +L     R+  +S  D ++G+ N   +   L +   
Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               ++ + +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EF
Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 292

Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237
           A    G+   ++AI A  + ++ E  + + +   P + + IS G+A      P++  I  
Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343

Query: 238 YR-----ADQALYVAKKSGRNRV 255
           YR     AD ALY AK +GRNR 
Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366


>gi|293415265|ref|ZP_06657908.1| cellulose synthesis regulatory protein [Escherichia coli B185]
 gi|291432913|gb|EFF05892.1| cellulose synthesis regulatory protein [Escherichia coli B185]
          Length = 564

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 551 KQAGRNRV 558


>gi|283781774|ref|YP_003372529.1| diguanylate cyclase and metal dependent phosphohydrolase [Pirellula
           staleyi DSM 6068]
 gi|283440227|gb|ADB18669.1| diguanylate cyclase and metal dependent phosphohydrolase [Pirellula
           staleyi DSM 6068]
          Length = 779

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 77/142 (54%), Gaps = 2/142 (1%)

Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           H+ ++ S        S++  DIDYFK+INDNFGH  GD+V+   +  L         V R
Sbjct: 438 HATYVQSHRDRRLPFSLIICDIDYFKRINDNFGHQAGDEVLQSFAALLRRHTRPGDLVAR 497

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
            GGEEF    +      A   A +LR+  E ++  +++  +  IT S G+ E  + +   
Sbjct: 498 YGGEEFVLLCIDCDNTAATRRAEELRR--ELAEFPMAALGNKSITASFGVTELQNGDTPE 555

Query: 235 TIIYRADQALYVAKKSGRNRVV 256
           T++ RAD+ALY AK+SGRN V+
Sbjct: 556 TMLRRADRALYQAKESGRNTVI 577


>gi|229162983|ref|ZP_04290939.1| Sensory box/GGDEF family protein [Bacillus cereus R309803]
 gi|228620389|gb|EEK77259.1| Sensory box/GGDEF family protein [Bacillus cereus R309803]
          Length = 431

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ ID L+ + N   F   L +        +EK++++ FDID FK++ND +GH 
Sbjct: 262 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDNVIRNDEKIALILFDIDNFKKVNDTYGHD 321

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 322 FGDLALVQLAELMKSKVEQQHVFARWGGEEFIILVTDTVEKEAFQVAESLRFFIETKQF- 380

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             SG S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 381 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCVY 426


>gi|209809304|ref|YP_002264842.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238]
 gi|208010866|emb|CAQ81267.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238]
          Length = 446

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 9/166 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++N   +L + D ++G      +   L       S++  DID+FK+IND +GH +GD+VI
Sbjct: 284 NFNHRKKLVQFDRMTGFYRRDFYEKRLQKKTSH-SLLLIDIDHFKRINDTYGHKIGDEVI 342

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++ +++          R GGEEF  A    ++ + AI A+ +R +IE  +I       
Sbjct: 343 QEVAVRILNQIRPKDIAVRWGGEEFIVAFEPLTDDQLAIKADLIRAVIEKHEI-----KG 397

Query: 216 IHITIS-AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           I +TIS  G+  R      S    RAD ALY +K+SGRN+V   SD
Sbjct: 398 IEVTISIGGVVSR--DTSFSYAYKRADAALYTSKESGRNKVTIVSD 441


>gi|206578608|ref|YP_002239482.1| membrane-associated diguanylate cyclase [Klebsiella pneumoniae 342]
 gi|206567666|gb|ACI09442.1| membrane-associated diguanylate cyclase [Klebsiella pneumoniae 342]
          Length = 379

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 89/162 (54%), Gaps = 5/162 (3%)

Query: 98  NRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            R+  ++  D L+G  N    +AF++ L      L+++  D+DYFK+ ND++GH  GD  
Sbjct: 215 QRLESIANRDALTGTANRRALNAFLAQLWEQKAPLALMMIDVDYFKRYNDHYGHQAGDDC 274

Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212
           ++ ++  L + V      V R GGEEF  +  G S   A ++A  +++ I ++ + + +S
Sbjct: 275 LSSVAQVLKMAVRAEDDLVARYGGEEFVVSLPGVSLAHATVIAERIQQKIHDAALPHEAS 334

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +  +T+S G+       P+ T+I RAD ALY AK  GRN+
Sbjct: 335 AVAAVVTVSMGVVASDGTVPMETLIARADSALYQAKNKGRNQ 376


>gi|148557273|ref|YP_001264855.1| diguanylate cyclase [Sphingomonas wittichii RW1]
 gi|148502463|gb|ABQ70717.1| diguanylate cyclase [Sphingomonas wittichii RW1]
          Length = 419

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 95/203 (46%), Gaps = 19/203 (9%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y  +  L L  +++   +   Y+ G  L E      ++   +  D L+G  N  A + + 
Sbjct: 218 YTYIVFLGLPAMTVGAGIFSLYLMGGDLAE------KLRLTAETDSLTGAPNRRA-VEAA 270

Query: 123 GSY--------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           GS            LSI   D+D+FK+IND  GH  GD+V+  L+D      G     GR
Sbjct: 271 GSRMMEEARATGRPLSIAICDVDHFKEINDLHGHGHGDEVLCRLTDLFRDQLGAADHYGR 330

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI- 233
            GGEEF     GS  + A IL   LR  I   QI       + +T S G+A     + I 
Sbjct: 331 FGGEEFVLLFPGSDAETARILVEALRTRIMAVQIGDL---PLRLTASFGVAAMGADDHIL 387

Query: 234 STIIYRADQALYVAKKSGRNRVV 256
           + I+ RAD+ALY +K++GRNR  
Sbjct: 388 ADILKRADRALYASKENGRNRTT 410


>gi|15802390|ref|NP_288416.1| hypothetical protein Z3047 [Escherichia coli O157:H7 EDL933]
 gi|12516062|gb|AAG56970.1|AE005417_12 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
          Length = 564

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  B L+ L N  A             ++    
Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHBTLTRLYNRGALFEKARPLAKLCQTHQHPF 430

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLIXSSLRAQDVAGRVGGEEFCVILPGASL 490

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 551 KQAGRNRV 558


>gi|83951362|ref|ZP_00960094.1| GGDEF [Roseovarius nubinhibens ISM]
 gi|83836368|gb|EAP75665.1| GGDEF [Roseovarius nubinhibens ISM]
          Length = 290

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 7/230 (3%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            F++ + T   +  + L  + + P      ILV +    +I+I++++ + Y  G  +  +
Sbjct: 13  LFAVVV-TACALTGVHLMQLVIYPPDLWRQILVTS---TVITISMAMPIAYFVGLQMAAV 68

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG-SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
                ++      D L+   +   F   +G + N  L ++  DID+FK +ND +GH  GD
Sbjct: 69  ERLTAQLEHAVNHDALTATCSRLRFYEEVGKARNWPLMLIATDIDHFKGVNDQYGHQAGD 128

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +   +  LV        V R GGEEF       +E EA   A  LR  +   +  +  
Sbjct: 129 AALRQFAQCLVRNCREDDIVARFGGEEFIILLRAETEPEALATAERLRSWVAAREF-VLD 187

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           G  +HIT S G+A       I   ++ +D ALY AK++GRNR VC  D E
Sbjct: 188 GHVVHITASFGVARAEDAASIDRAMHASDLALYRAKEAGRNR-VCAYDAE 236


>gi|260777430|ref|ZP_05886324.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607096|gb|EEX33370.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 338

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 90/172 (52%), Gaps = 5/172 (2%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           ++ L      + Q +  D L+ L N  +F   + +L    +K+ ++  DID+FK  ND +
Sbjct: 165 IQRLKTQLAEVQQDALFDGLTSLYNRRSFDNDLDTLCRSEQKICLILADIDHFKSYNDTY 224

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD VI  ++ +L +     +   R GGEEFA        + A   A  LR+ +E  
Sbjct: 225 GHLFGDAVIKGIAKRLQISSRDGIHAYRFGGEEFALIMPNKQLRIARQFAESLRRSVEKL 284

Query: 207 QI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            I +  SG  + +IT S G+AE    E  ++II RAD+ LY AK+ GRNRV+
Sbjct: 285 SIKDRRSGKQVGNITASFGVAELQPGEMPNSIIERADKLLYEAKQLGRNRVM 336


>gi|256752477|ref|ZP_05493334.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256748612|gb|EEU61659.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 486

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 10/172 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y  +++ S  D L+   N   F  +L          +E +S++ FD+D FK IND +GH 
Sbjct: 315 YYEVTKKSITDPLTKTYNRRYFNDALMENIMRADETSEPVSLIMFDLDNFKLINDTYGHL 374

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+V+  ++ ++     +   V R GGEEFA      + ++A ++A  +R  + +  I 
Sbjct: 375 VGDEVLKEVAKRIKNNVRSDDIVARFGGEEFAVILPKLTAEQAYMIAERIRNEVSSRPIR 434

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS-GRNRVVCFS 259
              G  I++TI+ G+A+   K +    +I  AD+ALY   KS GRN++  + 
Sbjct: 435 TDKG-DIYVTITGGVADYPEKADSAEKLISHADRALYAGGKSKGRNKIAIYE 485


>gi|205351698|ref|YP_002225499.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205271479|emb|CAR36296.1| adrA protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326626730|gb|EGE33073.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 370

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
            LSL +I +   LL  ++S     +L     R+  +S  D ++G+ N   +   L +   
Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               ++ + +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EF
Sbjct: 233 HSRHHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 292

Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237
           A    G+   ++AI A  + ++ E  + + +   P + + IS G+A      P++  I  
Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343

Query: 238 YR-----ADQALYVAKKSGRNRV 255
           YR     AD ALY AK +GRNR 
Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366


>gi|197251011|ref|YP_002145365.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197214714|gb|ACH52111.1| AdrA protein [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
          Length = 370

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
            LSL +I +   LL  ++S     +L     R+  +S  D ++G+ N   +   L +   
Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               ++ + +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EF
Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 292

Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237
           A    G+   ++AI A  + ++ E  + + +   P + + IS G+A      P++  I  
Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343

Query: 238 YR-----ADQALYVAKKSGRNRV 255
           YR     AD ALY AK +GRNR 
Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366


>gi|58039152|ref|YP_191116.1| sensor histidine kinase [Gluconobacter oxydans 621H]
 gi|58001566|gb|AAW60460.1| Sensor histidine kinase [Gluconobacter oxydans 621H]
          Length = 401

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 85/163 (52%), Gaps = 7/163 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R  +L   D LSG  N  AF + L   G      +++  DID+FK IND  GH VGD++I
Sbjct: 217 RQQELILQDPLSGGSNRRAFQAWLENDGKICAHEALLMVDIDHFKSINDAHGHAVGDQII 276

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +      +   P  + R+GG+EF       S  E    A+ LRK   +++  +  G +
Sbjct: 277 IAMGRVCTDILYPPTVLFRIGGDEFVVVFQCDSLDEMLATAHRLRKAF-STETRLIGGGA 335

Query: 216 IHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256
           +  T+S G A  C     P + ++ +AD ALY+AK+SGRNRVV
Sbjct: 336 VTATLSIG-AALCPGRGIPRTELLAQADNALYIAKQSGRNRVV 377


>gi|16763765|ref|NP_459380.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167992228|ref|ZP_02573326.1| AdrA protein [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|197262292|ref|ZP_03162366.1| AdrA protein [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|7242806|emb|CAB77394.1| AdrA protein [Salmonella typhimurium]
 gi|16418888|gb|AAL19339.1| putative diguanylate cyclase/phosphodiesterase domain 1 [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|197240547|gb|EDY23167.1| AdrA protein [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|205329537|gb|EDZ16301.1| AdrA protein [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261245668|emb|CBG23464.1| adrA protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267992090|gb|ACY86975.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301156997|emb|CBW16480.1| adrA protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312911416|dbj|BAJ35390.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321225108|gb|EFX50169.1| Protein YaiC [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323128700|gb|ADX16130.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332987333|gb|AEF06316.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 370

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
            LSL +I +   LL  ++S     +L     R+  +S  D ++G+ N   +   L +   
Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               ++ + +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EF
Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 292

Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237
           A    G+   ++AI A  + ++ E  + + +   P + + IS G+A      P++  I  
Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343

Query: 238 YR-----ADQALYVAKKSGRNRV 255
           YR     AD ALY AK +GRNR 
Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366


>gi|84391221|ref|ZP_00991552.1| GGDEF family protein [Vibrio splendidus 12B01]
 gi|84376510|gb|EAP93388.1| GGDEF family protein [Vibrio splendidus 12B01]
          Length = 352

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 90/166 (54%), Gaps = 18/166 (10%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDK 153
           S+ +  D L+G+LN  A    L   ++       KLS+++ DIDYFK +ND +GH +GD 
Sbjct: 192 SEKAHRDELTGILNRHAIRDWLKMQSQQVKQGHGKLSMLYLDIDYFKSVNDKYGHQMGDH 251

Query: 154 VIAFLSDQLVV---VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           ++   S  +VV   +  T   V R GGEEF      +   EA   A  +R ++ +  + +
Sbjct: 252 ILREFS--MVVGSSISATDKLV-RWGGEEFIVFCPETDLGEAQRKAEKIRLLV-SQHLWV 307

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              P   +T S GIAE   +E ++  I RAD+ALY AK SGRN+V+
Sbjct: 308 HGDP---LTCSIGIAE-MKQERVTETIARADEALYQAKHSGRNQVI 349


>gi|330953037|gb|EGH53297.1| response regulator, putative/diguanylate cyclase [Pseudomonas
           syringae Cit 7]
          Length = 302

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 83/157 (52%), Gaps = 10/157 (6%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +  L           + L     DID+FK++ND+ GHP+GD+VI  L+
Sbjct: 130 DSLTGLYNHTHILQLLEDCCFRSRREGKPLCFAMLDIDHFKRVNDSHGHPMGDRVIKSLA 189

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218
             L        F+GR GGEEFA     +  Q A  + +D+R+    ++I+  + P  +  
Sbjct: 190 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIQSAHRVLDDIRQRF--AEIHYPAQPVDLFC 247

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T SAG+      +   ++  +AD ALY AK +GRN+V
Sbjct: 248 TFSAGVVSLGANDDSLSLASQADAALYCAKHAGRNQV 284


>gi|300022157|ref|YP_003754768.1| response regulator receiver modulated diguanylate cyclase
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523978|gb|ADJ22447.1| response regulator receiver modulated diguanylate cyclase
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 456

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 76/164 (46%), Gaps = 10/164 (6%)

Query: 102 QLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +LS  D L+GL N           +S        LS++  DID+FK +ND  GH  GD V
Sbjct: 290 ELSVTDSLTGLHNRRYMEGHLRTLVSEAIRTGRSLSMLVADIDHFKDVNDTHGHDAGDAV 349

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   S +L           RLGGEEF      +    A  +   LR  +   +  I  G 
Sbjct: 350 LKEFSVRLKRNTRGVDLACRLGGEEFVIIMPDTDLDRAYQIGERLRACVAADEFTIDGGQ 409

Query: 215 SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S+ +T S GIA  E     P  ++  RAD ALY AK+ GRNRVV
Sbjct: 410 SVRVTASVGIATLESPQDTP-ESMFKRADNALYKAKRRGRNRVV 452


>gi|78485130|ref|YP_391055.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78363416|gb|ABB41381.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2]
          Length = 502

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 85/159 (53%), Gaps = 12/159 (7%)

Query: 104 SRIDCLSGLLNHSAF---ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           S ID L+   N   F   +  L  Y +    +S++F+DID+FKQIND  GH VGD+++  
Sbjct: 346 SEIDELTQAYNRRYFNQKLRQLLHYQDNRHPVSVMFYDIDFFKQINDTHGHLVGDEILKS 405

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-I 216
           LS  +     +   + R GGEEFA     +  Q+A   A +LR+ +E       + P+ +
Sbjct: 406 LSHFIRGHLRSEDILVRWGGEEFAVVLKEAHLQQAVEKAEELRQAVEE-----KTWPNDV 460

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +TIS  + E    + + ++  R D  LY AK+SGRNRV
Sbjct: 461 KMTISISVIELHENDNLKSLQARLDDLLYNAKESGRNRV 499


>gi|66046882|ref|YP_236723.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63257589|gb|AAY38685.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 308

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           + + LS++  DID+FK++ND +GH  GD V+  ++  L         V R GGEEF    
Sbjct: 175 HKQPLSLLMLDIDHFKKVNDEYGHHTGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVIL 234

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +    A ++   L + + N +    S P++ +T+S G +     E   +++ RAD AL
Sbjct: 235 SNTGADSAELIGQRLCQAVRNLEFRELS-PALTMTVSLGCSTLLPTETADSLLRRADNAL 293

Query: 245 YVAKKSGRNRVVCFS 259
           YVAK+ GRNR+   S
Sbjct: 294 YVAKREGRNRIAMAS 308


>gi|167916704|ref|ZP_02503795.1| diguanylate cyclase [Burkholderia pseudomallei 112]
 gi|217424330|ref|ZP_03455829.1| diguanylate cyclase [Burkholderia pseudomallei 576]
 gi|237509235|ref|ZP_04521950.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346]
 gi|254296646|ref|ZP_04964102.1| diguanylate cyclase [Burkholderia pseudomallei 406e]
 gi|157806512|gb|EDO83682.1| diguanylate cyclase [Burkholderia pseudomallei 406e]
 gi|217392795|gb|EEC32818.1| diguanylate cyclase [Burkholderia pseudomallei 576]
 gi|235001440|gb|EEP50864.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346]
          Length = 311

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 9/168 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ + +  D L+G+ N   F        S    Y   LS++ FD+D+FK IND FGH VG
Sbjct: 144 KLQEYANRDGLTGIANRRFFEARLRDEFSRWQRYGGNLSVLLFDLDHFKTINDRFGHVVG 203

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++ ++  V  +    GR GGEEFA     +S  EA  +A  +R+ I ++ I  +
Sbjct: 204 DNVLRVMAQRVADVVRSQDTFGRFGGEEFALLLPCTSLDEAMHVAEKIRQTIGSTPIE-A 262

Query: 212 SGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCF 258
            G  + +T S G A          T++  AD ALY AK+ GRN  V F
Sbjct: 263 EGVRVPVTASVGGAAAHAGALTHETLVNEADAALYRAKRQGRNCSVAF 310


>gi|315445287|ref|YP_004078166.1| diguanylate cyclase (GGDEF) domain-containing protein
           [Mycobacterium sp. Spyr1]
 gi|315263590|gb|ADU00332.1| diguanylate cyclase (GGDEF) domain-containing protein
           [Mycobacterium sp. Spyr1]
          Length = 612

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 98/190 (51%), Gaps = 14/190 (7%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-GSYNE----KLSIV 132
           I+ L   +   +  E  + Y     L+  D L+GL N  A +S L G   E     +S +
Sbjct: 158 IASLFAQVQARVEAETQLRY-----LAEHDDLTGLNNRRALLSHLDGRLAEGQPGPVSAL 212

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           FFD+D  K IND  GH  GD  I  L+++L         + RLGG+EF     G  + EA
Sbjct: 213 FFDLDRLKAINDYLGHTAGDWFIRVLAERLREGADPRALIARLGGDEFVVVPAGPMDGEA 272

Query: 193 A-ILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKS 250
           A +LA+ L+  ++  +++I  G  +  T+S G+A     ++  S ++ RADQA+  AK S
Sbjct: 273 AELLAHHLQSTLKE-RVSI-DGEMLTRTVSIGVAVGIPGQDTTSDLLRRADQAVLTAKNS 330

Query: 251 GRNRVVCFSD 260
           G NRV  F++
Sbjct: 331 GGNRVTVFTE 340


>gi|283852505|ref|ZP_06369773.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio sp. FW1012B]
 gi|283572113|gb|EFC20105.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio sp. FW1012B]
          Length = 433

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 80/171 (46%), Gaps = 11/171 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           +L +    +  L+ +D L+  +N       LG        Y   LS+V  DID FK IND
Sbjct: 256 DLELERRELLDLANLDPLTRAMNRRKLTEVLGDEAARAARYRSPLSVVLLDIDRFKAIND 315

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD V+  L+ +L         + R GGEEF   A G + Q A  LA  LR  + 
Sbjct: 316 THGHAVGDAVLVELAARLRAGLRQVDRLARYGGEEFVVVAPGINGQGAYDLAERLRLAVG 375

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + +          +T S G+A     +    ++ RAD+ALY AK  GRN+V
Sbjct: 376 DKEFAGVG----RVTASFGVAGHVPGQEPEAMLRRADEALYRAKNGGRNKV 422


>gi|242238650|ref|YP_002986831.1| diguanylate cyclase [Dickeya dadantii Ech703]
 gi|242130707|gb|ACS85009.1| diguanylate cyclase [Dickeya dadantii Ech703]
          Length = 371

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 10/176 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ ++S  D ++ L N   +   L         Y    ++   D+D+FK INDNFGH V
Sbjct: 188 RRLKEMSIHDGMTRLYNRQHWEQLLQNEFDICARYQRVATLALLDVDHFKTINDNFGHHV 247

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD  +  LS+ L         +GR GG+EF      +   EA ++   LR+ +E+ Q++ 
Sbjct: 248 GDDALLLLSNGLKSTLRQADIIGRFGGDEFGIVFPETRVDEARLVVERLREYLESVQLHH 307

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDIENNT 265
           +  P + I ISAG+ +   +        R AD ALY AK  GR   VC   +   T
Sbjct: 308 T--PLLRIGISAGLVQFSSEMSDHRAWMRAADMALYQAKNRGRGCSVCVDSLSAAT 361


>gi|290894266|ref|ZP_06557234.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J2-071]
 gi|290556205|gb|EFD89751.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J2-071]
          Length = 375

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 95/190 (50%), Gaps = 15/190 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +LL+ Y    I K   +  N +++ +  D L+ L N   F    G          + LS+
Sbjct: 184 ALLVFYACNYIDKSNLVIQN-LTETAMTDSLTNLPNMRFFTQQFGWIFTKSQKRKKSLSL 242

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ 190
              DID+FK+IND  GH  G+ V+A  S  L    F       R+GGEEFA        +
Sbjct: 243 FIIDIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTE 302

Query: 191 EAAILANDLRKIIENSQI--NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247
           +AA++A+  R+ +E ++   N +SG    +T+S G+A    H     ++   ADQALY A
Sbjct: 303 QAALIADFFREEVERAKFPYNPASG---KVTVSIGVASASSHFSTTESLFEAADQALYQA 359

Query: 248 KKSGRNRVVC 257
           K+SGRN++  
Sbjct: 360 KQSGRNQIAV 369


>gi|152991282|ref|YP_001357004.1| two-component response regulator [Nitratiruptor sp. SB155-2]
 gi|151423143|dbj|BAF70647.1| two-component response regulator [Nitratiruptor sp. SB155-2]
          Length = 414

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 13/171 (7%)

Query: 95  ISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           + +++I +L+  D L+G  N             +     + +SI   D+D+FKQIND FG
Sbjct: 247 VQFHKIKELAIKDALTGCYNRYYLFDMGQKLFENFKRQQKPVSIAILDLDHFKQINDTFG 306

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENS 206
           H +GD+V+      L        FV R GGEEF       S+++A  I+   +RK +   
Sbjct: 307 HSIGDEVLRHFGQILQNSLRQGDFVVRYGGEEFVIFFGNCSKEDAKRIVEERIRKRVHED 366

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I    G +++   S GI +   +E ++ +I +AD+ LY+AKK+   R VC
Sbjct: 367 CIMTDDGQNVYYNFSCGICD--SEEQLNQLIKKADEKLYMAKKT---RGVC 412


>gi|193215888|ref|YP_001997087.1| diguanylate cyclase [Chloroherpeton thalassium ATCC 35110]
 gi|193089365|gb|ACF14640.1| diguanylate cyclase [Chloroherpeton thalassium ATCC 35110]
          Length = 440

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 89/178 (50%), Gaps = 9/178 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           KE+    N ++Q+   D  + L N   F       ++    +NE LS++  D+D FK  N
Sbjct: 259 KEVEEKTNELNQMVITDEKTKLFNFRHFKQEFLIEVARAKRFNEPLSLIMIDVDKFKHYN 318

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH +GD+V+  +S  L           R GGEEFAA    +  +EA  +A  +R  I
Sbjct: 319 DTNGHMLGDQVLIKVSALLKKECRETDVPARFGGEEFAALLPRTDAKEAFQVAERIRSSI 378

Query: 204 ENSQI-NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           E S+  N  + P  ++T S G+A           +I  AD+ALY AK++GRNRV  +S
Sbjct: 379 ETSEFENQKAQPGGNLTASLGVATFPFDAYDAEALIIAADEALYRAKENGRNRVEVYS 436


>gi|183222726|ref|YP_001840722.1| hypothetical protein LEPBI_I3382 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912758|ref|YP_001964313.1| GGDEF domain-containing protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167777434|gb|ABZ95735.1| GGDEF domain protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167781148|gb|ABZ99446.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 305

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 88/168 (52%), Gaps = 7/168 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           N + +L+ +D L+ L N  +F       I+++   N +  +   DID+FK IND +GH +
Sbjct: 136 NSLKRLAYMDELTMLPNRRSFADTLQKTIATVKRRNRESVLAVMDIDHFKVINDTYGHDI 195

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  +++  V        VGRLGGEEF      ++ + A I+ + LR+ +E  +  I
Sbjct: 196 GDLVLKKMANIFVDCLREEDTVGRLGGEEFGCILPDTTTEGATIVLDRLRESVETHRFFI 255

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                ++IT+S G  +    +    ++  AD ALY AK  GRNR+  +
Sbjct: 256 FDNYYLNITLSIGYTKVHPIQKPEEVLKFADIALYQAKNHGRNRIQVY 303


>gi|71280694|ref|YP_267379.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71146434|gb|AAZ26907.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 626

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 1/129 (0%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++FFD DYFK +ND  GH +GD+V+  L++    V      VGR+GGEEF      +  
Sbjct: 499 SLIFFDADYFKLVNDELGHNIGDQVLICLANIASNVIRKGDVVGRVGGEEFIILLPDTDI 558

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
             A  +AN L   IE  + +I S   +  T+SAG+     +  +S ++++AD+ALY AK 
Sbjct: 559 DTALSIANRLLTNIEQYEWSIISN-DLTQTVSAGVVSYQGENDLSELLFKADKALYEAKA 617

Query: 250 SGRNRVVCF 258
           +GRN +  F
Sbjct: 618 AGRNHIKTF 626


>gi|86145434|ref|ZP_01063765.1| sensory box/GGDEF family protein [Vibrio sp. MED222]
 gi|85837011|gb|EAQ55131.1| sensory box/GGDEF family protein [Vibrio sp. MED222]
          Length = 434

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 83/175 (47%), Gaps = 20/175 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSY--NEKLSIVFFDIDYFKQINDNFGH 148
           N++  LS  D LSG  N   F        S +  Y   E+  +   DID+FK+IND FGH
Sbjct: 265 NKLRNLSEKDALSGCWNRRKFDLELRDECSRVSRYPTREQSCLAILDIDHFKRINDRFGH 324

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GDK I  ++  L        FV R+GGEEF      ++ QEA  + N LR  +     
Sbjct: 325 DYGDKAIQIVAQVLQRECRDTDFVARIGGEEFGVILPHTTPQEADYVLNRLRIAVSIEFD 384

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDIE 262
           N+       +TIS GI      EP   + Y+ AD ALY AK  GRN V  F D E
Sbjct: 385 NV-------VTISGGITN-LTSEP--ALNYKCADLALYEAKAVGRNNVCLFLDSE 429


>gi|218670355|ref|ZP_03520026.1| diguanylate cyclase [Rhizobium etli GR56]
          Length = 169

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 77/131 (58%), Gaps = 5/131 (3%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++ FD+D+FK++ND FGH  GD V+   +          +F GR+GGEEFAA A  S +
Sbjct: 1   AVILFDLDHFKRVNDRFGHQAGDAVLTAFARMARQYIPNHIF-GRMGGEEFAAFAAVSDQ 59

Query: 190 QEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEP-ISTIIYRADQALYVA 247
            EA  +A  +R   E  ++ +S+G +I  +T+S GIA     E  I  +I  AD+ALY A
Sbjct: 60  MEAEAIAEAIR--TEFCRLPVSTGEAIVPVTVSIGIALAASIEANIDKLISAADRALYAA 117

Query: 248 KKSGRNRVVCF 258
           K +GRN  V F
Sbjct: 118 KAAGRNCTVTF 128


>gi|168261188|ref|ZP_02683161.1| AdrA protein [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|207855867|ref|YP_002242518.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|238911482|ref|ZP_04655319.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|205350031|gb|EDZ36662.1| AdrA protein [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|206707670|emb|CAR31954.1| adrA protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 370

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
            LSL +I +   LL  ++S     +L     R+  +S  D ++G+ N   +   L +   
Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               ++ + +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EF
Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 292

Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237
           A    G+   ++AI A  + ++ E  + + +   P + + IS G+A      P++  I  
Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343

Query: 238 YR-----ADQALYVAKKSGRNRV 255
           YR     AD ALY AK +GRNR 
Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366


>gi|91793938|ref|YP_563589.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91715940|gb|ABE55866.1| GGDEF domain [Shewanella denitrificans OS217]
          Length = 621

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 13/195 (6%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS-------AF 118
           +  LSL +  + +++LLG++       L+ S       S+ D L+G+ + S         
Sbjct: 428 ITRLSLWLFVLLVAILLGFLGF-----LYQSRRFFKHRSQTDFLTGIASRSFTMEEGAKA 482

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           + +     + L++V  DID FK IND++GH +GD  I  ++ +          +GR+GGE
Sbjct: 483 LETCHKLKQPLAVVMLDIDNFKHINDSYGHDIGDMAIRAVAQRAKHWLKRNDILGRIGGE 542

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EF      +++QEA ++A  LR  I N ++    G  +  +IS G+A    ++  +  + 
Sbjct: 543 EFLLVLPNNNQQEALLIAERLRVSI-NEKLFKFKGVELKFSISLGVALSKPQQGFNEQVK 601

Query: 239 RADQALYVAKKSGRN 253
            AD ALY AK +GRN
Sbjct: 602 NADLALYQAKNAGRN 616


>gi|16119598|ref|NP_396304.1| hypothetical protein Atu5372 [Agrobacterium tumefaciens str. C58]
 gi|15162162|gb|AAK90745.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 411

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 82/179 (45%), Gaps = 10/179 (5%)

Query: 96  SYNRISQLSR---IDCLSGLLNHSAFISSLGSYN-EKL-----SIVFFDIDYFKQINDNF 146
           +Y  I +  R   +D L+ LLN     + L S   E+L     +I+  DID+FK IND F
Sbjct: 206 TYEAIEKYRRYANLDPLTNLLNRRGLDAVLASAQGERLKKPATAIILADIDHFKAINDRF 265

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD VI      +     T   V RLGGEEFA     +   +A   A  +R+     
Sbjct: 266 GHSFGDLVIKRFGALVQSHTTTQGCVARLGGEEFAVLLPDTCLDDAIAAAEKMRRSFAAE 325

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           +       S   T S G+A     E +ST   RADQ LY AK+ GRNRV     +   T
Sbjct: 326 RWPCDRKES-EFTASFGVALVEDGEALSTAFERADQFLYAAKRMGRNRVAAAKHVWRET 383


>gi|299771420|ref|YP_003733446.1| response regulator [Acinetobacter sp. DR1]
 gi|298701508|gb|ADI92073.1| response regulator [Acinetobacter sp. DR1]
          Length = 472

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 80/159 (50%), Gaps = 11/159 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL-----SIVFF--DIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+  L    F+ S+    EK+     +  FF  D+D+FKQ+NDN+GH +GD+ +    
Sbjct: 311 DELTSSLTRRQFLQSVRLLQEKVHKENKTSAFFMLDVDHFKQVNDNYGHQIGDRALQTCV 370

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +  +      +GR GGEEFA     ++++ A  LA  +R  I    I I     I I 
Sbjct: 371 TTIQNILHPHDLLGRFGGEEFAIFIADTTKESAFDLAEQIRIKISQQPIYIYGKLPIFIQ 430

Query: 220 ISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S GI   +   H+  I  +   AD ALY AK+ GRNRV
Sbjct: 431 VSIGISLYSPSSHRA-IENLFKEADDALYQAKRQGRNRV 468


>gi|299132243|ref|ZP_07025438.1| diguanylate cyclase [Afipia sp. 1NLS2]
 gi|298592380|gb|EFI52580.1| diguanylate cyclase [Afipia sp. 1NLS2]
          Length = 344

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 9/186 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-----ISSLGSYN--EKLSIVFFDIDYFKQI 142
           L  +  S     + ++ D L+ L N  A      ++ + +    + LS++  DID+FK+ 
Sbjct: 157 LDTIRTSLRDAEERAKTDTLTALPNRRALEEFFRVAQMRAMEVEDPLSLLMLDIDHFKKF 216

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH VGD+VI  ++  L           R GGEE  A   G+       +A  +R  
Sbjct: 217 NDTYGHSVGDQVIRLIASVLRERVRENDLPARYGGEELIAVLPGADLATCHEVAERIRTT 276

Query: 203 IENSQI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +    +   S+G S+  I++S G+A+    E ++T+I R D+ALY AK  GRN VV   D
Sbjct: 277 VAGCHLTRRSTGESLPDISVSIGVAQFRPGESMATLIERCDRALYKAKAQGRNCVVSEDD 336

Query: 261 IENNTC 266
           + +  C
Sbjct: 337 LTDADC 342


>gi|325982814|ref|YP_004295216.1| diguanylate cyclase [Nitrosomonas sp. AL212]
 gi|325532333|gb|ADZ27054.1| diguanylate cyclase [Nitrosomonas sp. AL212]
          Length = 558

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 15/170 (8%)

Query: 103 LSRIDCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+GL N +         L  Y       +++  D+D+FK  NDN GH  GD+VI
Sbjct: 385 LSVTDSLTGLYNRNKLNVIISDQLARYERNKRPFAVLMIDVDHFKTFNDNLGHVAGDEVI 444

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
           A ++ ++        F  R GG+EF      ++  EA   A  +R  + N   + S   +
Sbjct: 445 AAVAKKISQSIRNVDFAARYGGDEFIIILTETAVNEAMKTAERIRAQVANVHCS-SLNKT 503

Query: 216 IHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           + +T+S GI      EP    ++T++ R D ALY AK+SGRN+V C + I
Sbjct: 504 LRVTLSIGI---IQSEPEDISLTTLLARVDSALYQAKRSGRNQVHCVAPI 550


>gi|256828284|ref|YP_003157012.1| PAS/PAC sensor-containing diguanylate cyclase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577460|gb|ACU88596.1| diguanylate cyclase with PAS/PAC sensor [Desulfomicrobium baculatum
           DSM 4028]
          Length = 572

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 24/172 (13%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +L+  D L+GL N   F+  + +       + + L +   DID FK++ND  GH VG
Sbjct: 400 RLERLANTDELTGLPNRRHFLECVRAEMTRSRRFGKSLCVAMVDIDDFKKVNDTHGHGVG 459

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--------AAALGSSEQEAAILANDLRKII 203
           D  +  ++  +  +      VGRLGGEEF         AA + ++E+    LA     ++
Sbjct: 460 DLALRHVAQTINGLRRAVDVVGRLGGEEFCVLFPEAGLAAGITAAERVRKALAE---AVL 516

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           E+  + +       +T+S G+AE    E +  ++ R+D+ALY AK++G+NRV
Sbjct: 517 EHGDLRL------RLTVSIGLAEYSGDESLDGLLRRSDEALYEAKRTGKNRV 562


>gi|153010998|ref|YP_001372212.1| response regulator PleD [Ochrobactrum anthropi ATCC 49188]
 gi|151562886|gb|ABS16383.1| response regulator receiver modulated diguanylate cyclase
           [Ochrobactrum anthropi ATCC 49188]
          Length = 461

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 9/170 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S NR   ++  D L+GL N           ++        LS++  D D+FK+IND +GH
Sbjct: 288 SLNRTITMAVTDSLTGLHNRRYLDTHMPVLLTRAMGRERPLSVIMLDFDHFKRINDQYGH 347

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+   + +L         + R GGEEF      S  + A  +A  +R  + ++  
Sbjct: 348 DAGDDVLREFATRLRKNIRGMDLMCRYGGEEFVVVLPDSDVEAAKAVAERIRIAVSDTPF 407

Query: 209 NISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +++G   +++TIS G+A  R   +    +  R D ALY AKK GRNR+V
Sbjct: 408 AVANGKHKVNLTISMGVAGLRLMGDSADALFSRTDAALYQAKKGGRNRIV 457


>gi|13474502|ref|NP_106071.1| hypothetical protein mlr5400 [Mesorhizobium loti MAFF303099]
 gi|14025256|dbj|BAB51857.1| mlr5400 [Mesorhizobium loti MAFF303099]
          Length = 416

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 10/168 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-----SYNEKL--SIVFFDIDYFKQINDNFGHPVGD 152
           + Q +  D ++G+L+  AFI   G     +  ++   S + FD+D+FK +NDNFGH  GD
Sbjct: 169 LRQHASSDAVTGVLSRRAFIDQGGKAFALARRQRFDFSCIVFDVDHFKSVNDNFGHAAGD 228

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KV++ +  Q           GR+GGEEF A  L +    A   A  LR  IE  +I    
Sbjct: 229 KVLSGVGRQCGAALRDVDIFGRVGGEEF-AVLLYTGRNGALESAERLRGTIETMRIT-HG 286

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              + +T S G+A        +  +I RAD A+Y +K +GRNR+  ++
Sbjct: 287 AQEMQVTASFGVASFDPATSGLPELIERADAAMYRSKHAGRNRITAWN 334


>gi|330874570|gb|EGH08719.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 677

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 81/157 (51%), Gaps = 8/157 (5%)

Query: 106 IDCLSGLLNHSAFISSLGS-----YNEKLSIV--FFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+GL N +A+   L         EK S++    D+D+FK+IND +GH  GDKV+  +
Sbjct: 519 IDPLTGLPNRAAWGERLEQEMADWQREKNSLLVCILDLDHFKRINDGYGHLAGDKVLKIV 578

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           ++          F+ R GGEEF      +       L ++LR  +E    +   G  + I
Sbjct: 579 ANVFKKRLRPADFLARFGGEEFVMLLPATPPGTGLTLLDELRTAVELCPFHFK-GERVTI 637

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T+S G+      E   T I RADQALY AK++GRNRV
Sbjct: 638 TVSIGVTALRTGERSDTAIKRADQALYKAKENGRNRV 674


>gi|298505517|gb|ADI84240.1| sensor diguanylate cyclase, PAS domain-containing [Geobacter
           sulfurreducens KN400]
          Length = 300

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 10/168 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
           + + QL  +D L+G+ N       L S       Y     ++  D+D+FK+IND+FGH +
Sbjct: 134 DELQQLVFLDPLTGVANRRYIQMYLQSKFDEMFRYGWPFGVMLLDLDHFKEINDSFGHQM 193

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD ++   +  L     +   +GR GGEEF A      E+    +A   R+++E S + +
Sbjct: 194 GDDLLKMAARTLRNAVRSYDLIGRWGGEEFIAIITNVREKRLCEMAERFRRLVEESSMTV 253

Query: 211 SSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             G +I  +T+S G       + + +++ R D+ LY +K +GRN V C
Sbjct: 254 --GDNIARVTVSIGATLATSDDTVGSLLKRTDELLYRSKGAGRNCVTC 299


>gi|296137587|ref|YP_003644829.1| diguanylate cyclase [Thiomonas intermedia K12]
 gi|295797709|gb|ADG32499.1| diguanylate cyclase [Thiomonas intermedia K12]
          Length = 523

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 11/172 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++  L+  D L+GL N   F       + +  +      I+  D+D+FKQIND +GHPV
Sbjct: 354 QQLRALAHTDPLTGLQNRRGFFAMVEHALRTRPAGQPGPCIMLIDLDHFKQINDRYGHPV 413

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+++   +  ++ +        R+GGEEF          +A  +A  +R+ +       
Sbjct: 414 GDEILVEFAQVVLSLLREGDVFARMGGEEFCILLAHMRASQALEVAERVREFVAAHPFQT 473

Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           S+G  + +++S GIA  C    + I  ++  ADQA+Y AK+ GRNR   + D
Sbjct: 474 SAG-VVRLSLSLGIAG-CDAPVQSIDRVLSMADQAMYRAKQGGRNRTELYCD 523


>gi|194292813|ref|YP_002008720.1| diguanylate cyclase (ggdef domain) [Cupriavidus taiwanensis LMG
           19424]
 gi|193226717|emb|CAQ72668.1| putative diguanylate cyclase (GGDEF domain) [Cupriavidus
           taiwanensis LMG 19424]
          Length = 528

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 78/164 (47%), Gaps = 9/164 (5%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+G+ N   F       ++      + L ++  D+D FKQ ND  GH  GD  +  +
Sbjct: 364 IDALTGIRNRRYFQRESIAAVTRACERGQPLGLLILDVDQFKQYNDLHGHMAGDDCLRQI 423

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIH 217
           +  +  V     F  RLGGEEFAA   G+S  E   LA  +   +    I     P    
Sbjct: 424 AGAISGVLHGEQFCARLGGEEFAAVLPGASRDETRELARRMVAAVRELGIAHQGTPVQPV 483

Query: 218 ITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +TIS G      + P +  +++RAD A+Y AK++GRNR +   D
Sbjct: 484 VTISVGAVWAVPEAPRLEPLLHRADSAMYRAKRAGRNRFMLDGD 527


>gi|124266212|ref|YP_001020216.1| diguanylate cyclase [Methylibium petroleiphilum PM1]
 gi|124258987|gb|ABM93981.1| diguanylate cyclase [Methylibium petroleiphilum PM1]
          Length = 351

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 6/162 (3%)

Query: 104 SRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           ++ D L+GL N  +F       L      +S+V  DID+FK +ND  GH  GD+V+  ++
Sbjct: 176 AQTDSLTGLHNRRSFEQHIAKFLADREAAMSLVLVDIDHFKLVNDTHGHLFGDQVLMAVA 235

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--H 217
             L           R+GGEEFA     +  + A  LA  +R  I NS+I   +       
Sbjct: 236 RVLKESVRNDDLAARIGGEEFALLLPSTPLKGAVELAERIRTSIANSRIRRRNSEQQVGQ 295

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           IT+S G+A+    +   +   RAD+ALY +K+ GRNRV   S
Sbjct: 296 ITVSLGVADLWPSDNGESWFSRADEALYASKREGRNRVTAPS 337


>gi|72162617|ref|YP_290274.1| hypothetical protein Tfu_2218 [Thermobifida fusca YX]
 gi|71916349|gb|AAZ56251.1| GGDEF [Thermobifida fusca YX]
          Length = 448

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 27/176 (15%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           + ++   +R D  +GLLN  A+       ++        L+++  DID+FK++ND  GH 
Sbjct: 258 FQQLQTAARTDPKTGLLNAVAWERVAKTELTRALRTGCPLAVLIIDIDHFKKVNDTHGHL 317

Query: 150 VGDKVI----AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           VGD+V+      LS QL      P   +GR GGEEF     G+   EA   A  LR    
Sbjct: 318 VGDQVLLNVATMLSQQL-----RPYDVIGRFGGEEFVVLLPGADMAEACRTAERLR---- 368

Query: 205 NSQINISSGP----SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +Q+   + P    +I +T+S G+A  R H   +  ++  AD ALY AK SGR+RV
Sbjct: 369 -TQVGRMAQPINDITITVTVSIGVALLRVHGRDLLELMAAADLALYRAKDSGRDRV 423


>gi|167036757|ref|YP_001664335.1| GAF sensor-containing diguanylate cyclase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115180|ref|YP_004185339.1| diguanylate cyclase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166855591|gb|ABY93999.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928271|gb|ADV78956.1| diguanylate cyclase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 554

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 10/172 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y  +++ S  D L+   N   F  +L          +E +S++ FD+D FK IND +GH 
Sbjct: 383 YYEVTKKSITDPLTKTYNRRYFNDALMENIMRADETSEPVSLIMFDLDNFKLINDTYGHL 442

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+V+  ++ ++     +   V R GGEEFA      + ++A ++A  +R  + +  I 
Sbjct: 443 VGDEVLKEVAKRIKNNVRSDDIVARFGGEEFAVILPKLTAEQAYMIAERIRNEVSSRPIR 502

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS-GRNRVVCFS 259
              G  I++TI+ G+A+   K +    +I  AD+ALY   KS GRN++  + 
Sbjct: 503 TDKG-DIYVTITGGVADYPEKADSAEKLISHADRALYAGGKSKGRNKIAIYE 553


>gi|226198081|ref|ZP_03793653.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9]
 gi|225929957|gb|EEH25972.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9]
          Length = 499

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 84/171 (49%), Gaps = 16/171 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++L+  D L+GL N  A   +L          +  L+I+F DID+FK+ ND +GH VGD
Sbjct: 326 LARLAGTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGD 385

Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +V+A +S    Q     G    V R GGEEF      +    A ++A  +R  +    I 
Sbjct: 386 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 443

Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                   +T+S G+A    +      I  I+  ADQALY AK  GRNRVV
Sbjct: 444 HEGSEVGFVTVSVGVAVWHPDGASAPHIDAIVEAADQALYQAKADGRNRVV 494


>gi|254457121|ref|ZP_05070549.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Campylobacterales bacterium GD 1]
 gi|207085913|gb|EDZ63197.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Campylobacterales bacterium GD 1]
          Length = 648

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 95/171 (55%), Gaps = 15/171 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+  ++  D L+ L N   F       I+      +K+++ + D+D FK++ND +GH VG
Sbjct: 472 RLEHMAHYDMLTNLPNRVLFSDRMHQAIAQTARREQKIAVAYIDLDGFKEVNDRYGHDVG 531

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-NSQINI 210
           DK++  L++++  +      + R+GG+EF A  +  S++E+ I    L++++E  SQ   
Sbjct: 532 DKLLILLAERMSNLLREGDSISRVGGDEFVALLIDISDKESVISF--LKRLLEVTSQAVE 589

Query: 211 SSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFS 259
               S++++ S G+     KE   +  II +ADQA+Y AK SG+N   C++
Sbjct: 590 IDDLSLNVSASIGVTFYPQKELLDVDQIIRQADQAMYRAKLSGKN---CYN 637


>gi|206558832|ref|YP_002229592.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
 gi|198034869|emb|CAR50741.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
          Length = 452

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 92/178 (51%), Gaps = 14/178 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142
           ++LF ++  + + S  D L+G  N        H+ F+ +     E LS++  D+D FK  
Sbjct: 275 QQLFEAHATLIRSSARDGLTGAFNRSHFNDHFHTLFLQAR-RQGEPLSLLMVDVDRFKAY 333

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD  +  +++ L      P   V R GGEEFA     +  + A ++A+++R+
Sbjct: 334 NDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEFAIVLPNTGARGARVVADEVRE 393

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256
            +    + +   P+  +++S G A     + +ST   +I  AD ALY AK +GRNRVV
Sbjct: 394 AVLRLDLAMPDSPAGRVSVSVGCAT-VSADDLSTPDALIEAADAALYRAKDAGRNRVV 450


>gi|156933994|ref|YP_001437910.1| hypothetical protein ESA_01820 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532248|gb|ABU77074.1| hypothetical protein ESA_01820 [Cronobacter sakazakii ATCC BAA-894]
          Length = 480

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 13/168 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVG 151
           +IS+ +  D L+G+ + S    +L   +         L ++  D+D+FK INDN+GH  G
Sbjct: 296 QISRRANYDHLTGVYSRSGLFEALARDDANPALAGRPLCVMLMDLDHFKSINDNYGHECG 355

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+A    +L  + G    V R+GGEEF       +   A  LA  +R+ +    + + 
Sbjct: 356 DAVLAVFGQKLREITGEAGRVARMGGEEFVVVCPNITLDRACHLAETIRQQVAGQPV-VC 414

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYR----ADQALYVAKKSGRNR 254
            G S+  +IS G+  +   +E +S    R    AD  LY +K+ GRNR
Sbjct: 415 EGKSVSFSISIGLGYDAAPRERVSDAFTRLMREADTLLYQSKRQGRNR 462


>gi|150377268|ref|YP_001313863.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae
           WSM419]
 gi|150031815|gb|ABR63930.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae
           WSM419]
          Length = 729

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 10/170 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           S   ++ L+R D L+GL N ++F  SL       + ++  ++++ D+D FKQ+ND  GHP
Sbjct: 296 SQAELNHLARHDPLTGLANRASFNQSLAQAVASSAADQANALLYLDLDRFKQVNDTLGHP 355

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+++  ++ +L+    +   + R+GG+EF      + ++E   L + L   I      
Sbjct: 356 VGDRLMVAVAKRLMET-ASAGVISRIGGDEFTIVVERTRQEEVEKLCDSLIAAIRQP-FE 413

Query: 210 ISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           I   P  I ++I   +A     +P+  I  +AD ALY AK +GRNR   F
Sbjct: 414 IDGQPILIGLSIGVAVATGNDADPVE-ITRKADIALYHAKSAGRNRYAVF 462


>gi|330972351|gb|EGH72417.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 308

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           + + LS++  DID+FK++ND +GH  GD V+  ++  L         V R GGEEF    
Sbjct: 175 HKQPLSLLMLDIDHFKKVNDEYGHHTGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVIL 234

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +    A ++   L + + N +    S P++ +T+S G +     E   +++ RAD AL
Sbjct: 235 SNTGADSAELIGQRLCQAVRNLEFRELS-PALTMTVSLGCSTLLPTETADSLLRRADNAL 293

Query: 245 YVAKKSGRNRVVCFS 259
           YVAK+ GRNR+   S
Sbjct: 294 YVAKREGRNRIAMAS 308


>gi|302187659|ref|ZP_07264332.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 308

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           + + LS++  DID+FK++ND +GH  GD V+  ++  L         V R GGEEF    
Sbjct: 175 HKQPLSLLMLDIDHFKKVNDEYGHHTGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVIL 234

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +    A ++   L + + N +    S P++ +T+S G +     E   +++ RAD AL
Sbjct: 235 SNTGADSAELIGQRLCQAVRNLEFRELS-PALTMTVSLGCSTLLPTETADSLLRRADNAL 293

Query: 245 YVAKKSGRNRVVCFS 259
           YVAK+ GRNR+   S
Sbjct: 294 YVAKREGRNRIAMAS 308


>gi|149377541|ref|ZP_01895281.1| diguanylate cyclase [Marinobacter algicola DG893]
 gi|149358154|gb|EDM46636.1| diguanylate cyclase [Marinobacter algicola DG893]
          Length = 365

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 112/216 (51%), Gaps = 22/216 (10%)

Query: 55  LTPFYGLEYI-----LVENLSLVIISITISLLLGYIS--GSILKELFISYNRISQLSRID 107
           +T ++ LE++     +++ L++V+ +I   L+LG+I    +  +E   +  ++  L++ D
Sbjct: 140 ITFYFHLEFVADAGGVIDLLNMVLCAI---LMLGFIHLYETRREE---AEQKLFTLAQTD 193

Query: 108 CLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+GL N + F S+L              ++V  DID+FK +ND  GH  GD V+  +  
Sbjct: 194 ALTGLANRANFQSTLDRTLAECARSGSGFALVIMDIDHFKVVNDTMGHDAGDHVLQNIGK 253

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
           QL         VGRLGGEEF         +++  L ++LR+ I +S++       I +T 
Sbjct: 254 QLTERLRITDAVGRLGGEEFGLILRDVKLEDSFQLMDELRQRIADSELPYGDA-LIRVTA 312

Query: 221 SAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
           S GIA    H     T+   AD+ L+ +K++GRNRV
Sbjct: 313 SFGIAHYPDHAIEAETLFRIADRCLFSSKRAGRNRV 348


>gi|91791817|ref|YP_561468.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91713819|gb|ABE53745.1| diguanylate cyclase [Shewanella denitrificans OS217]
          Length = 641

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 91/177 (51%), Gaps = 13/177 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEK----LSIVFFDIDYFKQI 142
           L+EL     ++ + + +D L+G+ N +AF   L   G  + +    ++I+  DID FK I
Sbjct: 459 LRELNDVNQKLLEQTTLDSLTGVKNRNAFDKRLVAEGRISRRQQTPMAILMLDIDKFKSI 518

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD  I  ++  L      P   V R GGEEFA     +    A I+A  +R 
Sbjct: 519 NDEFGHLGGDHCIQSIAKVLTEQLKRPTDLVSRFGGEEFAIILPNTDLDGAMIVAETVRA 578

Query: 202 IIENSQINISSGP---SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I+  Q+     P   S  + +SA + E   + PI  ++  AD+ALY AK++GRNR+
Sbjct: 579 SIDELQLVWDEKPMKISASLGVSAAVIE-SDEHPIE-LLELADKALYQAKRNGRNRI 633


>gi|24375348|ref|NP_719391.1| cyclic nucleotide phosphodiesterase, putative [Shewanella
           oneidensis MR-1]
 gi|24350166|gb|AAN56835.1|AE015818_11 cyclic nucleotide phosphodiesterase, putative [Shewanella
           oneidensis MR-1]
          Length = 631

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 102/206 (49%), Gaps = 21/206 (10%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI---DCLSGLLNHSAFIS 120
           +L +N SL +I   I LL G I  ++    +   +R  QL  I   D L+ L N     +
Sbjct: 422 LLEKNKSLQLI---ILLLTGCILATVSLFAYKQVHRNRQLQTIALTDYLTQLPNRRHIYA 478

Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
               Y +         SI+ FD D+FK+INDNFGH +GD+ +  +++    +      VG
Sbjct: 479 QAEQYFQLALKQQIPFSIIIFDADHFKKINDNFGHEIGDQALLTIAEASKTLTTDRNLVG 538

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIA-----ER 227
           R+GGEEF      +    A  LA++L+ +I     IN+     + +T+SAG+A       
Sbjct: 539 RIGGEEFLILLPNTDADRAWKLAHELQTLITRFGAINLPV--ELKLTVSAGVATLPIQSE 596

Query: 228 CHKEPISTIIYRADQALYVAKKSGRN 253
              +  + ++ RAD ALY AK +GRN
Sbjct: 597 LQDQNFARLLKRADNALYEAKNAGRN 622


>gi|325917835|ref|ZP_08180014.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325535946|gb|EGD07763.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 988

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 10/156 (6%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN +  +++L        +    L++V  D+D+FK +ND  GH  GD V+A + 
Sbjct: 818 DELTGLLNRAGILAALRDMLRNADATARPLAVVLIDLDHFKLVNDQHGHLAGDAVLAGVG 877

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +L  +      +GR GGEE  A   G + +    L    R I  +  I+   G  +H+T
Sbjct: 878 RRLDTLVRGDDRIGRYGGEELLALLPGLTHEATHRLDALHRGICGDYPID---GGWLHVT 934

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+A     E +  ++ RAD ALY AK+SGRNR+
Sbjct: 935 CSIGVAWFAPGETLEQLLARADTALYSAKRSGRNRI 970


>gi|313673627|ref|YP_004051738.1| diguanylate cyclase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940383|gb|ADR19575.1| diguanylate cyclase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 403

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 82/158 (51%), Gaps = 8/158 (5%)

Query: 107 DCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N           I  L  Y  K S++F DID FK+IND +GH VGD V+ +L+
Sbjct: 246 DPLTGLFNRKFMMKKIEEEIERLKRYGSKFSVIFLDIDNFKRINDVYGHIVGDFVLKYLA 305

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + +        +  R GGEE       ++ + A   +  L +I+ N+     +   + IT
Sbjct: 306 NIIKSELRKVDYAFRYGGEEMVILLSETNLENALKFSERLLEIVRNTIFKYKT-EDLKIT 364

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+AE    E I  +I RAD A+  AK++G++RVV 
Sbjct: 365 VSIGVAEFKPGETIEQLIERADMAMLKAKQAGKDRVVS 402


>gi|300924100|ref|ZP_07140094.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|300419696|gb|EFK03007.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
          Length = 362

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 102/197 (51%), Gaps = 25/197 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II +   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPII-VVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTPA-ESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKS 250
           R     AD ALY AKK+
Sbjct: 346 REWLKSADLALYKAKKA 362


>gi|326319540|ref|YP_004237212.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323376376|gb|ADX48645.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 402

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 16/177 (9%)

Query: 93  LFISYNRIS----QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           +F++ +R      +++  D L+ + N  A I++L           E LS++  DID+FK+
Sbjct: 205 IFMARDRADAANERMAARDPLTDVPNRRATIAALDRCVAQAVRSGEPLSVMMLDIDHFKR 264

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH  GD+V+  + D L     +   +GR GGEEF      +    A +LA +LR 
Sbjct: 265 INDGLGHLAGDQVLCGVVDVLGERLRSQDLIGRYGGEEFLVLLPRTPLAGALVLAGELRA 324

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRV 255
            +E +      G ++ +T+S G+A     EP      ++  AD+A+Y AK++GRN+V
Sbjct: 325 AVEQAHFEF-VGRTVPVTLSIGVAGGV-LEPGDRWDGLVAAADEAMYRAKRAGRNQV 379


>gi|200390604|ref|ZP_03217215.1| AdrA protein [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|199603049|gb|EDZ01595.1| AdrA protein [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 365

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
            LSL +I +   LL  ++S     +L     R+  +S  D ++G+ N   +   L +   
Sbjct: 169 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 227

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               ++ + +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EF
Sbjct: 228 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 287

Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237
           A    G+   ++AI A  + ++ E  + + +   P + + IS G+A      P++  I  
Sbjct: 288 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 338

Query: 238 YR-----ADQALYVAKKSGRNRV 255
           YR     AD ALY AK +GRNR 
Sbjct: 339 YREWLKSADMALYKAKNAGRNRT 361


>gi|161615434|ref|YP_001589399.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161364798|gb|ABX68566.1| hypothetical protein SPAB_03205 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 370

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
            LSL +I +   LL  ++S     +L     R+  +S  D ++G+ N   +   L +   
Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               ++ + +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EF
Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 292

Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237
           A    G+   ++AI A  + ++ E  + + +   P + + IS G+A      P++  I  
Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343

Query: 238 YR-----ADQALYVAKKSGRNRV 255
           YR     AD ALY AK +GRNR 
Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366


>gi|194436522|ref|ZP_03068623.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 101-1]
 gi|253773497|ref|YP_003036328.1| hypothetical protein ECBD_2104 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161589|ref|YP_003044697.1| hypothetical protein ECB_01494 [Escherichia coli B str. REL606]
 gi|300929009|ref|ZP_07144507.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
 gi|194424554|gb|EDX40540.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 101-1]
 gi|242377281|emb|CAQ32022.1| diguanylate cyclase [Escherichia coli BL21(DE3)]
 gi|253324541|gb|ACT29143.1| diguanylate cyclase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973490|gb|ACT39161.1| hypothetical protein ECB_01494 [Escherichia coli B str. REL606]
 gi|253977701|gb|ACT43371.1| hypothetical protein ECD_01494 [Escherichia coli BL21(DE3)]
 gi|300463022|gb|EFK26515.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
          Length = 296

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S            L ++  DID FK +ND +GH  GD V+  L
Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLTGDVVLRTL 188

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      +++++A      + ++++N  I  S G  I+I
Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEDACRAGVRICQLVDNHAITHSEG-HINI 247

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291


>gi|332308909|ref|YP_004436759.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332176238|gb|AEE25491.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 386

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 84/182 (46%), Gaps = 19/182 (10%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           LFI       ++  D L+G+ +  A         ++ ++   D+D+FK+ ND +GH  GD
Sbjct: 203 LFIVLKESHNMAYRDQLTGISSRRAMEVQASGLGKRFAVAMCDVDHFKKFNDTYGHDTGD 262

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---- 208
            V+  ++ +L  V G  +   R GGEEF       S QEA      LR  I N  +    
Sbjct: 263 DVLRLVAKKLACVGGGGL-TYRYGGEEFCIIFKNKSGQEAFPYIEPLRLTIANYTLILRD 321

Query: 209 --------------NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
                         ++    S+ +T+S GIAE    E    ++ RADQ LY AK++GRN 
Sbjct: 322 KDRKQHTKEMRGISDVQGQQSVCVTMSFGIAETLSGEKFEDVLKRADQRLYNAKEAGRNC 381

Query: 255 VV 256
           V+
Sbjct: 382 VM 383


>gi|330952070|gb|EGH52330.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 690

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q + ID L+GL N +A+       +  + E+   L +   D+D+FK+IND +GH  GDKV
Sbjct: 528 QKALIDPLTGLPNRAAWGERLEQEMARWQEEKNSLLVCILDLDHFKRINDGYGHLAGDKV 587

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +++          F+ R GGEEF      +       L ++LR  +E+   +   G 
Sbjct: 588 LKIVANVFSKRLRANDFLARFGGEEFVMLLPATPPATGLTLLDELRAAVESCPFHFK-GE 646

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT+S G+      E   T I RADQALY AK++GRNR+
Sbjct: 647 RVTITVSIGLTAFRPGERSDTAIKRADQALYKAKENGRNRI 687


>gi|258405563|ref|YP_003198305.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
 gi|257797790|gb|ACV68727.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
          Length = 315

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 10/168 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ +++R+D L+GL N    + SL       G    ++++   D+D+FK +ND +GH  G
Sbjct: 146 QLEEMTRLDPLTGLANRRHLMESLSRELSRCGRSGSQVTVAILDLDHFKVVNDTYGHLCG 205

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+   + +L  +      VGR GGEEF      +S +    +   LRK +  + +   
Sbjct: 206 DQVLIHTAKRLESMLRQYDLVGRYGGEEFCVILPETSLKSGFEIVERLRKAVAATPVPYE 265

Query: 212 SGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257
               I +T+SAG A     E +ST  ++  ADQ LY AK +GR+ V C
Sbjct: 266 D-LEIPLTVSAGCACTEDMECLSTDALLLSADQYLYKAKDAGRDCVQC 312


>gi|218549243|ref|YP_002383034.1| diguanylate cyclase, GGDEF protein [Escherichia fergusonii ATCC
           35469]
 gi|218356784|emb|CAQ89412.1| putative diguanylate cyclase, GGDEF protein [Escherichia fergusonii
           ATCC 35469]
          Length = 463

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 78/161 (48%), Gaps = 15/161 (9%)

Query: 107 DCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N S F + L        N+   ++  DID+FK +ND +GHP GDKVI  + D 
Sbjct: 296 DPLTNIFNRSHFFNELKGQVNSGDNKPFCVMIMDIDHFKSVNDTWGHPEGDKVIKAVVDI 355

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216
           +         + R+GGEEF         +E   LA  +RK +E     N Q  I+   +I
Sbjct: 356 IGKSIRPDDVLARVGGEEFGVMLTHLERKEGEELAERIRKNVEQLTDNNPQYAIAQKVTI 415

Query: 217 HITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
            I +     +  H       IYR AD ALY AK +GRN+V+
Sbjct: 416 SIGVVVTQGDVLHPND----IYRLADNALYNAKATGRNKVI 452


>gi|91226388|ref|ZP_01261187.1| hypothetical protein V12G01_06266 [Vibrio alginolyticus 12G01]
 gi|91189202|gb|EAS75482.1| hypothetical protein V12G01_06266 [Vibrio alginolyticus 12G01]
          Length = 349

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 9/171 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQINDN 145
           L I   ++  L+  D L+G+ N   F+    S L  Y  +     +   D+D FK +ND 
Sbjct: 172 LHIQIMKMEHLATTDDLTGIPNRREFMRQIESRLNEYRTQGIDFHVAILDLDNFKSLNDR 231

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GDK +    + +         + R+GGEEFA      S Q+A      +R  +E 
Sbjct: 232 FGHDAGDKSLIHAVNTIKSHLLDCDLLARVGGEEFAIVLRSRSSQQALDTLETIRNALET 291

Query: 206 SQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
           + +   SG  +  T S G+ + C   +    ++ RAD ALY AK++GRNRV
Sbjct: 292 TTVQ-HSGCDMSFTASIGVTQVCRLDDSFEPLVKRADLALYKAKETGRNRV 341


>gi|62178996|ref|YP_215413.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|167551810|ref|ZP_02345563.1| AdrA protein [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|224582221|ref|YP_002636019.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|62126629|gb|AAX64332.1| putative diguanylate cyclase/phosphodiesterase domain 1 [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|205323419|gb|EDZ11258.1| AdrA protein [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|224466748|gb|ACN44578.1| adrA protein [Salmonella enterica subsp. enterica serovar Paratyphi
           C strain RKS4594]
 gi|322713453|gb|EFZ05024.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 370

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
            LSL +I +   LL  ++S     +L     R+  +S  D ++G+ N   +   L +   
Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               ++ + +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EF
Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 292

Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237
           A    G+   ++AI A  + ++ E  + + +   P + + IS G+A      P++  I  
Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343

Query: 238 YR-----ADQALYVAKKSGRNRV 255
           YR     AD ALY AK +GRNR 
Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366


>gi|330447646|ref|ZP_08311294.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491837|dbj|GAA05791.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 429

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 67/125 (53%), Gaps = 5/125 (4%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  DID+FK+IND +GH  GDKVI +L+  L  +      V R GGEEF       S+
Sbjct: 306 SLILLDIDHFKRINDQYGHDEGDKVIKYLAKNLNQLNSNSTRVFRWGGEEFLIVLPKLSK 365

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           +    L N    I  N    +  G    +TIS G+ E+  +E I   IYRAD ALY +K 
Sbjct: 366 KA---LLNKAESIRTNLDYTLQDGS--RVTISLGVTEQKREESIFQAIYRADIALYQSKF 420

Query: 250 SGRNR 254
            GRN+
Sbjct: 421 QGRNK 425


>gi|325003401|ref|ZP_08124513.1| GGDEF domain-containing diguanylate cyclase [Pseudonocardia sp. P1]
          Length = 419

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 97/185 (52%), Gaps = 21/185 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLS--IVFFDIDYFKQINDNFGHPV 150
            ++   +  D  +GLLN  ++ S       G+  +  +  ++  D+DYFK++ND +GH V
Sbjct: 226 RQLETRAETDEKTGLLNPDSWRSRAQRGLAGAERDGAAAGVLILDLDYFKEVNDRYGHLV 285

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA----ALGSSEQEAAI--LANDLRKIIE 204
           GD V+  +++ +          GR GGEEF  A      G+   EAA+  +   +R+ +E
Sbjct: 286 GDAVLQAVAEVISREVRDGDVAGRFGGEEFVIALGPVRPGNDGGEAAVREVGERIRRRVE 345

Query: 205 NSQINISSGPSI---HITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             Q+ +S+ P++    +T+S G A      + + T++  AD+ALY AK++GRNRV     
Sbjct: 346 TLQVQVSAAPTLVIEELTVSIGAALYPSTADELDTLLAIADEALYAAKRAGRNRV----Q 401

Query: 261 IENNT 265
           + N T
Sbjct: 402 VRNGT 406


>gi|307300872|ref|ZP_07580647.1| diguanylate cyclase [Sinorhizobium meliloti BL225C]
 gi|306904406|gb|EFN34991.1| diguanylate cyclase [Sinorhizobium meliloti BL225C]
          Length = 414

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 12/180 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL  +  R+ +L++ D L+G+ N    + +L              +++  DID FK +ND
Sbjct: 229 ELADANARLERLAKTDPLTGIANRRWMMETLNRLWSSGAERRPGTAMLMCDIDDFKSLND 288

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GH  GD+ +  ++  +   V      V R GGEEF     G++E+ A   A  +R  +
Sbjct: 289 RLGHAEGDRCLVKVAGIIQSSVRRNRDHVARYGGEEFLVVLPGANEEAAVATAERIRASV 348

Query: 204 ENSQI-NISSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNRVVCFS 259
           E + + N +S  + ++T+S G+A +   E I     +  +AD ALY+AK++GRNRVV + 
Sbjct: 349 EAASLPNPASRVAPYVTLSIGVAAQAPGEEIVAPEKLQNQADAALYLAKQAGRNRVVLYQ 408


>gi|299534010|ref|ZP_07047362.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298717919|gb|EFI58924.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 501

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 87/177 (49%), Gaps = 10/177 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           LK    + + ++ L+R D L+GL N       L     +        S++F DID FK  
Sbjct: 300 LKRRIHAESELALLARTDGLTGLNNRRRLDEMLDQEWHRARRNHSIFSLLFVDIDRFKAY 359

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD VIA ++  +      P     R GGEEF      +S + A+ LA  +R 
Sbjct: 360 NDTYGHQAGDDVIATIAKCIGDNIRRPGDIAARYGGEEFIVVLPDTSLEGASCLAESIRA 419

Query: 202 IIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +    +  S     +IT+S G A  E  H   ++++I  AD+ALY AK +GRN+VV
Sbjct: 420 AVSQLSVEHSGSEFGYITVSIGCAAWEPEHDADVASVIRSADEALYKAKTTGRNKVV 476


>gi|258622470|ref|ZP_05717492.1| GGDEF family protein [Vibrio mimicus VM573]
 gi|258585170|gb|EEW09897.1| GGDEF family protein [Vibrio mimicus VM573]
          Length = 338

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D LSGL N  AF     +L   +  + ++  DID+FK +ND +GH  GD++I  ++ +L 
Sbjct: 182 DSLSGLYNRRAFDGDMFTLIHADHPVCLIMLDIDHFKALNDTYGHLFGDQIIRAIAKRLQ 241

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221
            +    +   R GGEEFA      S + A   A  +R+ IE   + +  SG S+ +IT S
Sbjct: 242 SLCRDGVTAYRYGGEEFALITPNKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGNITAS 301

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ E+   + + +++ RAD  LY AK  GRNRV+
Sbjct: 302 FGVVEKIDGDSLESLVGRADGLLYEAKNLGRNRVM 336


>gi|258514041|ref|YP_003190263.1| diguanylate cyclase [Desulfotomaculum acetoxidans DSM 771]
 gi|257777746|gb|ACV61640.1| diguanylate cyclase [Desulfotomaculum acetoxidans DSM 771]
          Length = 236

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 20/193 (10%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125
           LV + I    + G + G I+  L+       + + +D L+GL N + F   L +      
Sbjct: 39  LVFLFIFFQTIAGLVLGRIINNLY-------KQAYVDFLTGLYNKNYFNKKLTNELKKTQ 91

Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
             N  LS++  DID FK INDN+GH +GDKVI+ L++ L         + R GGEEF   
Sbjct: 92  NSNSVLSLLIIDIDNFKGINDNYGHVMGDKVISALTNVLRQNLRGVDILSRWGGEEFTVI 151

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              ++ + AA  A  LR IIE++  N+  G    +T+S G+A          ++ +AD+A
Sbjct: 152 LPETNTEGAAASAERLRNIIEDT--NLFCGK---VTVSIGVASTNGHIDKDILVAQADKA 206

Query: 244 LYVAKKSGRNRVV 256
           LY AK+  RN VV
Sbjct: 207 LYKAKEK-RNTVV 218


>gi|297519532|ref|ZP_06937918.1| hypothetical protein EcolOP_17952 [Escherichia coli OP50]
          Length = 296

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S            L ++  DID FK +ND +GH  GD V+  L
Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLTGDVVLRTL 188

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      +++++A      + ++++N  I  S G  I+I
Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEDACRAGVRICQLVDNHAITHSEG-HINI 247

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291


>gi|262279764|ref|ZP_06057549.1| WspR [Acinetobacter calcoaceticus RUH2202]
 gi|262260115|gb|EEY78848.1| WspR [Acinetobacter calcoaceticus RUH2202]
          Length = 420

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 10/173 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L I  + +  LS+ D L+ + N   F      +          L+++F DID+FK  ND 
Sbjct: 237 LRIEASELLHLSQQDALTKISNRRTFDEMFDFFYYRAKQEQRPLAVLFIDIDFFKNYNDC 296

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH +GDKVI+ ++  +        FV R GGEEF      +  Q A  +A ++ K IE 
Sbjct: 297 YGHQMGDKVISSIASAIKNSIRHVDFVARYGGEEFVVLLPKTPAQGAYAVAANIYKAIER 356

Query: 206 SQI-NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
             I + +S  S H+TIS G         ++   +I+ ADQALY AK+ GRN++
Sbjct: 357 QAIPHAASLVSQHVTISLGFTVYTEGLRVTQENLIHAADQALYRAKQLGRNQI 409


>gi|261227550|ref|ZP_05941831.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str.
           FRIK2000]
          Length = 600

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 407 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 466

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 467 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 526

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 527 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 586

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 587 KQAGRNRV 594


>gi|197335681|ref|YP_002156460.1| ggdef domain protein [Vibrio fischeri MJ11]
 gi|197317171|gb|ACH66618.1| ggdef domain protein [Vibrio fischeri MJ11]
          Length = 490

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 93  LFISYNRISQ-----LSRIDCLSGLLNHSAFISSLGSYNEKLSIVF--FDIDYFKQINDN 145
           +F   +R+SQ     L++ D ++GL N   F  SL     K  + F  +DID FKQIND 
Sbjct: 319 MFYYQSRVSQKYYRDLAKQDPMTGLYNRRGFEMSLQDRVVKKYVGFAIYDIDDFKQINDV 378

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH VGD+ I +++  L         V R GGEEF       S      +   +RK I++
Sbjct: 379 FGHDVGDEAIKYVARMLNKSVRDSDIVSRFGGEEFVICINAESRNSLESVCERVRKSIQD 438

Query: 206 SQINISSGPSIHITISAGIAE-RCHKE-PISTIIYRADQALYVAKKSGRNRV 255
           S   +  G     T+S G+     H+E     +I +AD  LY AK+ G+NRV
Sbjct: 439 SSGKVVKGG---FTVSGGVTVIDSHQEFSFEHVIKKADALLYKAKQDGKNRV 487


>gi|330830637|ref|YP_004393589.1| response regulator PleD [Aeromonas veronii B565]
 gi|328805773|gb|AEB50972.1| Response regulator PleD [Aeromonas veronii B565]
          Length = 373

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 9/167 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVG 151
           R+ + S  D L+G++N    +  L     +L       +++  D+D FK+IND +GH  G
Sbjct: 195 RLYRESTTDELTGMMNRRLLMKQLEQARIRLQLKKKPFAVMLLDLDRFKRINDIYGHLAG 254

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQI-N 209
           D V+  ++  L       M +GR GGEEFA      ++   A+ +A  LR  +E   + +
Sbjct: 255 DAVLKEVATTLGEQLEPDMVLGRYGGEEFAILMHNCADPALASKMAERLRIAVEARLVKS 314

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +S   + +T+S GIA     + I  +I RAD+ LY AK +GRN VV
Sbjct: 315 PTSDELLEVTVSIGIAMARSDDTIDILINRADECLYQAKMAGRNCVV 361


>gi|260220639|emb|CBA28380.1| hypothetical protein Csp_A06980 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 774

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 13/180 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           S + E   S N + QL+  D L+GL N      F++   +    L+++  D+D FK IND
Sbjct: 332 SDVTEKVQSTNLLRQLAHTDSLTGLTNRFKLREFLTEKVAGKHPLALLSIDLDRFKAIND 391

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND----L 199
             GH VGD V+  ++ +L    G    + RLGG+EFA   +   + Q+A  L       L
Sbjct: 392 RHGHSVGDDVLRLIAQRLRQQLGPQTMIARLGGDEFAVVLVEPGDIQQAPTLGRRVVHLL 451

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++ ++ S   ++ G S+ +TIS     R     +  ++ +AD ALY AK +GR + V ++
Sbjct: 452 QEPLDISVRRLTVGGSVGLTIS-----RGDVVTLDELMVQADIALYAAKDAGRGQCVAYT 506


>gi|302878209|ref|YP_003846773.1| response regulator receiver modulated diguanylate cyclase
           [Gallionella capsiferriformans ES-2]
 gi|302580998|gb|ADL55009.1| response regulator receiver modulated diguanylate cyclase
           [Gallionella capsiferriformans ES-2]
          Length = 635

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 8/169 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           EL +S  R+  L+  D L+GL N    +  L             +  +  DID+FK IND
Sbjct: 463 ELALSNKRLQALAVTDALTGLPNRRYMMERLEQEWALATRAGRPVCCMMVDIDHFKMIND 522

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH +GD+ +  ++  L         + R+GGEEF      S  +   I A  LR+ + 
Sbjct: 523 TYGHQLGDEALKLVASSLQQAMRKQDVLCRVGGEEFMVICPDSDNKAGFIYAERLRQHVA 582

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
              + ++SG S+ +T+S G+A+         ++++AD  LY AK +GRN
Sbjct: 583 FQPV-LASGKSLRLTVSIGLADNAGLASPEAMMHQADLRLYAAKAAGRN 630


>gi|289207324|ref|YP_003459390.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
 gi|288942955|gb|ADC70654.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
          Length = 355

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 15/184 (8%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIV 132
           L  ++    LK  F+    ++  +++D L+ L N  A I  L          Y +  S++
Sbjct: 175 LSAFVLERALKLTFLQQRELAHSAQVDELTSLSNR-AHIEQLFEEECARTERYGQPFSVI 233

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DIDYFK +ND +GH  GD V+   ++ L         +GR+GGEEF      +  ++A
Sbjct: 234 LIDIDYFKAVNDTWGHRTGDTVLKQFAELLRQNLRKVDAIGRIGGEEFFVLLPQTDAEQA 293

Query: 193 AILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              A DL      ++IN     ++   T S G+ E    E       RADQALY AKK+G
Sbjct: 294 QAAARDL-----QARINAFDFDAVGRRTASFGVTEYRPGERRVDTFDRADQALYAAKKNG 348

Query: 252 RNRV 255
           RNR+
Sbjct: 349 RNRI 352


>gi|254501785|ref|ZP_05113936.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
 gi|222437856|gb|EEE44535.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
          Length = 479

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 102/207 (49%), Gaps = 15/207 (7%)

Query: 71  LVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-----ISSL 122
           + ++S+T+  L   + +  G + + L  S  +   L+  D LSGL N   F      S+ 
Sbjct: 258 IAMLSLTLGALAFGIAWRIGQLTRSLQKSEEQNRYLALHDNLSGLANRLQFNRVLETSTA 317

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
              N++ +++  D+D FK +ND +GH  GD VI  ++ +L  V G P  V R+GG+EF  
Sbjct: 318 DLPNKRFAVLHCDLDKFKAVNDTYGHAAGDTVIKIMAKRLNEVVGKPGLVCRIGGDEFMV 377

Query: 183 AALGSSEQEAAILANDLRKIIENS--QINISSGPSIHITISAG--IAERCHKEPISTIIY 238
              G + ++   L    R +I  +   I I  G + H+ +S G  +A     EP   ++ 
Sbjct: 378 IYRGGTSRKD--LDTLCRALINKALLPIQIEGGNTAHVGLSIGVAVAPADGTEP-EDLVA 434

Query: 239 RADQALYVAKKSGRNRVVCFSDIENNT 265
           R+D ALY AK  GR     + D+  +T
Sbjct: 435 RSDAALYRAKDRGRGVHAFYEDLLKDT 461


>gi|168819011|ref|ZP_02831011.1| AdrA protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205344077|gb|EDZ30841.1| AdrA protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320084658|emb|CBY94449.1| Protein adrA [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 370

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
            LSL +I +   LL  ++S     +L     R+  +S  D ++G+ N   +   L +   
Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               ++ + +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EF
Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 292

Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237
           A    G+   ++AI A  + ++ E  + + +   P + + IS G+A      P++  I  
Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343

Query: 238 YR-----ADQALYVAKKSGRNRV 255
           YR     AD ALY AK +GRNR 
Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366


>gi|159045360|ref|YP_001534154.1| response regulator [Dinoroseobacter shibae DFL 12]
 gi|157913120|gb|ABV94553.1| response regulator [Dinoroseobacter shibae DFL 12]
          Length = 462

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 89/169 (52%), Gaps = 12/169 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
           +R+ Q + ID L+GL N    +  L +  ++        +++  D D+FK+IND +GH  
Sbjct: 286 DRLRQ-AVIDPLTGLYNRRFALGQLSNIAQEALKTHRTFAVLLLDFDHFKKINDAYGHAA 344

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDKV+A  +  L     +   + R+GGEEF      +   EA  +A  LR  I++  I +
Sbjct: 345 GDKVLAETATLLRTRLRSLDVIARIGGEEFLMVLPDTDLDEARRVAERLRASIDDHPIAL 404

Query: 211 SSGP-SIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRV 255
             G  SI +TIS G+A      P   +S ++  AD+ALY AK  GRN+V
Sbjct: 405 PHGKGSIPVTISIGLAIGGAAAPEASVSELLETADRALYAAKSEGRNQV 453


>gi|118588080|ref|ZP_01545490.1| putative kinase/esterase [Stappia aggregata IAM 12614]
 gi|118439702|gb|EAV46333.1| putative kinase/esterase [Stappia aggregata IAM 12614]
          Length = 513

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 99/192 (51%), Gaps = 16/192 (8%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSY 125
           + I++  ++  +  +S S+ +    S  +    +R D L+GL N   F   L     G  
Sbjct: 301 IAIVAFALATKISRLSASLEE----SERKNRYFARHDALTGLANRHHFSDCLSFSLDGLP 356

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           +   SI   D+D FK +ND +GH  GD+VI  ++D+L ++ G    V R+GG+EF     
Sbjct: 357 DRGFSIFACDLDRFKPVNDTYGHEAGDRVICAVADRLRLLVGENGVVSRIGGDEFIVLLT 416

Query: 186 GSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRAD 241
              +++A A LA D+ + I +  I+I  G  + I +S GIA   E    E    +I  AD
Sbjct: 417 QQMDRDALAALAGDICRSIADP-IDIDGGHKVGIGVSIGIASAPESGMSE--QDLIRMAD 473

Query: 242 QALYVAKKSGRN 253
            ALY AK++GRN
Sbjct: 474 MALYRAKETGRN 485


>gi|91204236|emb|CAJ71889.1| hypothetical protein kustc1144 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 483

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 13/172 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFI-SSLGSYNEK------LSIVFFDIDYFKQINDNFGH 148
           +Y    +++ +D L+ L     F+ SS   Y +        SI+  DID+FK  ND +GH
Sbjct: 191 NYEHAQKVAMVDELTSLYTRRYFLESSQREYRQAERRGEFFSIIMVDIDHFKYFNDTYGH 250

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS-Q 207
            +GD+V+  L+  L +       + R GGEEF     G+++  A   A  LR  IE    
Sbjct: 251 LLGDEVLRKLASVLKLNARQSDVIARYGGEEFIILLPGTNKPGAVASAEKLRSAIEKKLA 310

Query: 208 INISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVV 256
           I +  G    +TI+AG+A  C+ E    +  +   AD+ LY+ KKSGRN++V
Sbjct: 311 IEVGGGHKEKVTITAGVA--CYPEDGNNVEEVTASADRFLYLGKKSGRNKIV 360


>gi|127513682|ref|YP_001094879.1| diguanylate cyclase [Shewanella loihica PV-4]
 gi|126638977|gb|ABO24620.1| diguanylate cyclase [Shewanella loihica PV-4]
          Length = 518

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 78/163 (47%), Gaps = 8/163 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +L+ +D L+ L N +A    +         +   L +   DID+FK INDNFGH  GDK
Sbjct: 354 QKLNLLDTLTQLPNRAALEERMEQEFRNYQRHRHPLWVAVADIDHFKSINDNFGHSTGDK 413

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  ++  L        FV R GGEEF       S  +   L N +R+ ++N      + 
Sbjct: 414 TLQVIAMALKNSLRESEFVARYGGEEFVLLIPDVSANDIEQLLNRVREKVKNIPFKFKN- 472

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I +T+S G A+    E IS    RAD ALY AK   R+RV+
Sbjct: 473 QRITVTVSIGAAQILENEQISETFERADAALYKAKHESRDRVI 515


>gi|238789818|ref|ZP_04633600.1| hypothetical protein yfred0001_29710 [Yersinia frederiksenii ATCC
           33641]
 gi|238722177|gb|EEQ13835.1| hypothetical protein yfred0001_29710 [Yersinia frederiksenii ATCC
           33641]
          Length = 499

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 81/156 (51%), Gaps = 9/156 (5%)

Query: 104 SRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           ++ D ++GL N     ++L       +  S++  DID+FK IND +GH VGD+VI  L+ 
Sbjct: 346 AQTDPMTGLYNRRGLATTLEPISQLEQHFSVIALDIDHFKAINDTYGHDVGDEVIKQLAV 405

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-IT 219
           Q+         + R GGEEF     G++   A  +A+ LR  +E   I     P+I  IT
Sbjct: 406 QIRESSRDTDILCRSGGEEFLMLLPGTTPDVAIQVAHRLRHNVEMMVI-----PNIRPIT 460

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           IS G+A           + RAD+ALY AK  GRNRV
Sbjct: 461 ISLGVAYWSGDGIPEDALKRADEALYRAKDQGRNRV 496


>gi|229152247|ref|ZP_04280440.1| Sensory box/GGDEF family protein [Bacillus cereus m1550]
 gi|228631209|gb|EEK87845.1| Sensory box/GGDEF family protein [Bacillus cereus m1550]
          Length = 431

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ ID L+ + N   F   L          +EK++I+ FDID FK +ND +GH 
Sbjct: 262 YQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTVNDTYGHD 321

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 322 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 380

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +G S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 381 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 426


>gi|153002144|ref|YP_001367825.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|151366762|gb|ABS09762.1| diguanylate cyclase [Shewanella baltica OS185]
          Length = 672

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 16/148 (10%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++ FD D+FK+INDNFGH +GD+ +  ++     + G    +GR+GGEEF      +  
Sbjct: 528 SVIIFDADHFKKINDNFGHELGDRALLTIASAGKALTGNKDLIGRIGGEEFLILLPNTDA 587

Query: 190 QEAAILANDLRKIIENSQINISSGPS-IHITISAGIA--------ERCHKEP-ISTIIYR 239
           + A  LA+ L+  I  S++     P+ + +T+SAG+A        E  +++   ++++ R
Sbjct: 588 ERACELAHQLQAHI--SRLGAEDLPTELKLTVSAGVATLAPQTNIENTYQDKDFASLLKR 645

Query: 240 ADQALYVAKKSGRNRVVCFSDIENN-TC 266
           AD ALY AK +GRN   C    +N  TC
Sbjct: 646 ADDALYEAKNAGRN---CVKAAKNEATC 670


>gi|221067706|ref|ZP_03543811.1| diguanylate cyclase [Comamonas testosteroni KF-1]
 gi|220712729|gb|EED68097.1| diguanylate cyclase [Comamonas testosteroni KF-1]
          Length = 400

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 119/248 (47%), Gaps = 20/248 (8%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           +++ SI F+ +     F     ++ +G +    L       L+LV I +  SLL   +  
Sbjct: 154 LLWLSIIFTAYT----FTRPALIWLLGYSDLRSLPRSPYWILTLVSI-LNFSLLFTVVMT 208

Query: 88  SI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQ 141
           +I +KE   + +++ +    D L+ +LN  +F        +      ++++  DID+FK+
Sbjct: 209 AIAVKE---TVDKLRKERDFDALTQVLNRRSFQEHAQKRLDDPRLYPMAVLACDIDHFKR 265

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH  GDKV+  +S  L         V R GGEEF     G +  +A ++A  +++
Sbjct: 266 INDAWGHERGDKVLQLVSATLQNNVREQDLVARFGGEEFVMLLTGITPCDAELIAQRIQR 325

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV----VC 257
            + +    + SGP   +T+S GI+       +   +  ADQ LY AK +GR+RV    V 
Sbjct: 326 DLGSKNPVLPSGP--KLTMSFGISSITKSFQLEQALKEADQLLYQAKNAGRDRVHVSGVV 383

Query: 258 FSDIENNT 265
           + D  + T
Sbjct: 384 YPDSSDKT 391


>gi|289207789|ref|YP_003459855.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
 gi|288943420|gb|ADC71119.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
          Length = 291

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 106/232 (45%), Gaps = 26/232 (11%)

Query: 48  IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI- 106
           I +F +G   F  L + L  ++  +++ I I LL G    S++   + S   I +++R+ 
Sbjct: 47  IPIFTLGYLGFIPLNWGLYHSIPDLLVPI-IFLLGGSFVCSVVLLTYSSVESIRRITRLE 105

Query: 107 -----DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
                D L+GL N       L         Y + LS+V  DID FK IND  GH  GD +
Sbjct: 106 HESITDPLTGLFNRRHMDRRLDEEVARSRRYGQPLSVVMLDIDEFKGINDRLGHLAGDYI 165

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS--- 211
           +  ++ +L           R GGEEF   A  + +  A  LA  LR  I  + I +    
Sbjct: 166 LESIAQRLRQNLRRVDLAARFGGEEFVVIAPHTDQDAALQLAEKLRSEIAQTPIILKGHE 225

Query: 212 -----SGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNR 254
                +   +++T+S G+A    E   ++    ++ RAD ALY AK  GRNR
Sbjct: 226 HVPPCAPDELYVTVSVGVASLNIEPDSRDNADFLLQRADDALYRAKAGGRNR 277


>gi|197117720|ref|YP_002138147.1| response receiver-modulated diguanylate cyclase [Geobacter
           bemidjiensis Bem]
 gi|197087080|gb|ACH38351.1| response receiver-modulated diguanylate cyclase [Geobacter
           bemidjiensis Bem]
          Length = 306

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 20/182 (10%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S+  EL  +  ++ +L+ ID L+ L N       L S         E LS+V  DIDYFK
Sbjct: 126 SLQDELKKANEQLKRLTNIDHLTNLFNRRYLTEVLESEFFRARRNRENLSLVIIDIDYFK 185

Query: 141 QINDNFGHPVGDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            +ND +GH  GD V   +A L+ + +  + +     R GGEEF     G+S +   ++A 
Sbjct: 186 NVNDTYGHQNGDVVLASVAGLAQKQLRAYDS---AARYGGEEFVLVLPGTSLEGGKMVAE 242

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRN 253
            LR+ +       S    + +TISAG+A      P    I ++  +AD+ALY AK++GRN
Sbjct: 243 RLRQAVLEFAFP-SPMEDLTLTISAGVA--TFPSPSIDNIDSLFRQADEALYRAKQTGRN 299

Query: 254 RV 255
           RV
Sbjct: 300 RV 301


>gi|59712246|ref|YP_205022.1| GGDEF domain-containing protein [Vibrio fischeri ES114]
 gi|59480347|gb|AAW86134.1| GGDEF domain protein [Vibrio fischeri ES114]
          Length = 490

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 93  LFISYNRISQ-----LSRIDCLSGLLNHSAFISSLGSYNEKLSIVF--FDIDYFKQINDN 145
           +F   +R+SQ     L++ D ++GL N   F  SL     K  + F  +DID FKQIND 
Sbjct: 319 MFYYQSRVSQKYYRDLAKQDPMTGLYNRRGFEMSLQDRVVKKYVGFAIYDIDDFKQINDV 378

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH VGD+ I +++  L         V R GGEEF       S      +   +RK I++
Sbjct: 379 FGHDVGDEAIKYVARMLNKSVRDSDIVSRFGGEEFVICINAESRNSLESVCERVRKSIQD 438

Query: 206 SQINISSGPSIHITISAGIAE-RCHKE-PISTIIYRADQALYVAKKSGRNRV 255
           S   +  G     T+S G+     H+E     +I +AD  LY AK+ G+NRV
Sbjct: 439 SSGKVVKGG---FTVSGGVTVIDSHQEFSFEHVIKKADALLYKAKQDGKNRV 487


>gi|83643204|ref|YP_431639.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631247|gb|ABC27214.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 578

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 90/183 (49%), Gaps = 24/183 (13%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           SG + + L I   R    +  D L+ L N  A+ + +         Y   L++V  DID 
Sbjct: 402 SGEVRERLEIERAR----ALTDALTALPNREAYENRVRDEFERWRRYGNPLTLVVADIDR 457

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++ND FGH  GDKVI  +  ++        F+ R GGEEF        E  A+I A  
Sbjct: 458 FKEVNDKFGHLAGDKVIQLIGKEVSRRIRKTDFIARYGGEEFVVLL---PETPASIAA-- 512

Query: 199 LRKIIENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             ++++ ++  IS  P       + IT+S G+ E      +  +  +ADQALY AK+SGR
Sbjct: 513 --EVMDKTREMISRLPFHFRNEKVRITMSFGVCEFHGDATVQGVFEKADQALYKAKRSGR 570

Query: 253 NRV 255
           N+V
Sbjct: 571 NQV 573


>gi|326797287|ref|YP_004315107.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326548051|gb|ADZ93271.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 590

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 86/171 (50%), Gaps = 25/171 (14%)

Query: 102 QLSRIDCLSGLLNHSAF-----ISSLGSYNEKLSIVFF--DIDYFKQINDNFGHPVGDKV 154
           + S  D L+GL N   F      + L +  +  SI F   DID+FK++ND FGH VGD+ 
Sbjct: 430 EQSNQDELTGLYNRRGFNVGFDRALLTAQQQSRSIAFVICDIDHFKRVNDLFGHTVGDQA 489

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK------IIENSQI 208
           +  ++D L         V R GGEEFA   +G S++E     N +R+      + EN   
Sbjct: 490 LQVVADVLKSQVRQHDIVARYGGEEFALVMVGMSQEEILSRLNKVRQAFLERPVCENH-- 547

Query: 209 NISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
                   HIT+S GIA R +       T+I  AD+ LY AK +GR+++V 
Sbjct: 548 --------HITMSFGIAYRNNSASHAPQTLITEADEKLYQAKNTGRDKIVA 590


>gi|291286797|ref|YP_003503613.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809]
 gi|290883957|gb|ADD67657.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809]
          Length = 396

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 1/127 (0%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           I+  DIDYFK +NDN+GH +GD+V+  L+  L        F  R GGEEF         +
Sbjct: 270 IMLVDIDYFKNVNDNYGHLIGDQVLKHLAKLLKDSIRKTDFAFRYGGEEFLIMLTNVDVR 329

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
            A  +A  +RK ++ +  ++    S ++T S GIA     +   ++I RAD+ LY AK++
Sbjct: 330 NATHVAEQIRKKLKETNFSLKEN-SFNVTASFGIALFEKDDTQESVIKRADERLYKAKQT 388

Query: 251 GRNRVVC 257
           GRN++V 
Sbjct: 389 GRNKIVS 395


>gi|206970971|ref|ZP_03231922.1| putative sensory box/GGDEF family protein [Bacillus cereus AH1134]
 gi|206733743|gb|EDZ50914.1| putative sensory box/GGDEF family protein [Bacillus cereus AH1134]
          Length = 430

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ ID L+ + N   F   L          +EK++I+ FDID FK +ND +GH 
Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTVNDTYGHD 320

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 321 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 379

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +G S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 380 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 425


>gi|126667729|ref|ZP_01738697.1| response regulator receiver domain protein (CheY-like)
           [Marinobacter sp. ELB17]
 gi|126627832|gb|EAZ98461.1| response regulator receiver domain protein (CheY-like)
           [Marinobacter sp. ELB17]
          Length = 511

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 90/176 (51%), Gaps = 13/176 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           EL  +   +  +S  D L+GL N   F + L          ++ +S+V  DIDYFK  ND
Sbjct: 329 ELNKTKRELETISLTDALTGLANRRHFDAYLEQEWSRALRQSQPISMVMLDIDYFKAFND 388

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GHP GD+ +  ++  L  V   P     R GGEEF  A +    Q+AA +A   R  I
Sbjct: 389 AYGHPRGDQCLKQVARALEQVMRRPTDLAARYGGEEF--ALVLPDTQDAATVAEACRVAI 446

Query: 204 ENSQI-NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +   I +  SG +  ITIS G+       K   + +I +AD ALY AK++GRN+V+
Sbjct: 447 QALGIVHEFSGVAPVITISVGVCSLVPTRKMSPAVLIQQADDALYDAKEAGRNQVL 502


>gi|330504721|ref|YP_004381590.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328919007|gb|AEB59838.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 367

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 96/199 (48%), Gaps = 19/199 (9%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           +L  ++ S +  LL  ++     K +F+  + ++  + ID L+GL N +  +  L     
Sbjct: 174 HLIWILASFSFGLLSAFLLEKAHKRMFLHQDSLALSANIDSLTGLWNRARTLHFLVEEAA 233

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI----AFLSDQLVVVFGTPMFVGRLG 176
               Y    S+V  DID+FK +ND  GH +GD V+      L + + VV      VGRLG
Sbjct: 234 RANRYGTPFSVVLIDIDHFKSVNDTHGHAIGDSVLRQFAGLLRNGVRVVDK----VGRLG 289

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236
           GEEF      +  + A      L+K I     +     S     S GIAE    E + ++
Sbjct: 290 GEEFLIVLPETDVEHAERAVQVLQKRINGFSFDRVERKS----ASFGIAEYRPGESLDSL 345

Query: 237 IYRADQALYVAKKSGRNRV 255
           + RADQA+Y AK +GR+R+
Sbjct: 346 MERADQAMYQAKANGRDRI 364


>gi|325914022|ref|ZP_08176378.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325539791|gb|EGD11431.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 324

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 78/163 (47%), Gaps = 11/163 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY------NEKL-SIVFFDIDYFKQINDNFGHPVGD 152
           + +L+ +D L+GL N      +L          E+L S++  D+D+FK++ND +GH  GD
Sbjct: 162 LEELASLDALTGLPNRRMLERALTHQIDQRQPQERLNSLIILDLDHFKEVNDLYGHAAGD 221

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             ++ L+  L      P  V R GGEEF       S  E       LRK+I N       
Sbjct: 222 AALSDLATILRYEVREPHQVFRFGGEEFVVLLRAGSLAELEAATERLRKVIRNGL----R 277

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           GP   IT+S G A    +        RAD ALY+AK SGR+ V
Sbjct: 278 GPGGRITVSLGAARHDGETHWQDWFSRADAALYLAKNSGRDSV 320


>gi|325497330|gb|EGC95189.1| hypothetical protein ECD227_1427 [Escherichia fergusonii ECD227]
          Length = 321

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 6/165 (3%)

Query: 104 SRIDCLSGLLNHSAFISS-----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S     L +  +K  ++  DID FK +ND  GH +GD V+  L
Sbjct: 139 SNMDILTGLPGRRVLDESFDRQLLNAEPDKFYLLLLDIDRFKSVNDTLGHLIGDVVLRTL 198

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           ++ L         V R GGEEF      +++ +A +    + ++I  +QI    G  +HI
Sbjct: 199 AENLATWMRHNESVYRYGGEEFVIMIKAATDVDACMAGLRICELIAGNQIAYPQG-ELHI 257

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T +AGI+     E +  ++ RAD+A+Y  K +GRNR +   + E 
Sbjct: 258 TATAGISRAKPGETLDVVMGRADRAMYQGKLTGRNRCMFMDENEQ 302


>gi|307266387|ref|ZP_07547925.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|326391146|ref|ZP_08212692.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter ethanolicus
           JW 200]
 gi|306918623|gb|EFN48859.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|325992845|gb|EGD51291.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 554

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 10/172 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y  +++ S  D L+   N   F  +L          +E +S++ FD+D FK IND +GH 
Sbjct: 383 YYEVTKKSITDPLTKTYNRRYFNDALMENIMRADETSEPVSLIMFDLDNFKLINDTYGHL 442

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+V+  ++ ++     +   V R GGEEFA      + ++A ++A  +R  + +  I 
Sbjct: 443 VGDEVLKEVAKRIKNNVRSDDIVARFGGEEFAVILPKLTAEQAYMIAERIRNEVSSRPIR 502

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS-GRNRVVCFS 259
              G  I++TI+ G+A+   K +    +I  AD+ALY   KS GRN++  + 
Sbjct: 503 TDKG-DIYVTITGGVADYPEKADSAEKLISHADRALYAGGKSKGRNKIAIYE 553


>gi|114561982|ref|YP_749495.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114333275|gb|ABI70657.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 321

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ +L+  D L+GL N  +F S           Y +  S++  DID FK++ND +GH VG
Sbjct: 158 KLERLANTDPLTGLFNRRSFTSFCEHEFFRATRYFQPFSLMIIDIDLFKKVNDTYGHLVG 217

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+VI  +++           + R+GGEEFA     +    A +LA  LR+     Q    
Sbjct: 218 DEVIKRVANICNEHVREADVLARIGGEEFAILLPDTDIDSAYVLAERLREA--QQQYEEQ 275

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
             PS  ITIS G+A  R   +    I  RAD+ALY +K  GRN V
Sbjct: 276 KTPS--ITISIGVATLRSQDKAFLEIFKRADKALYSSKNVGRNSV 318


>gi|323937364|gb|EGB33642.1| GGDEF domain-containing protein [Escherichia coli E1520]
 gi|323962309|gb|EGB57898.1| GGDEF domain-containing protein [Escherichia coli H489]
 gi|323973712|gb|EGB68887.1| GGDEF domain-containing protein [Escherichia coli TA007]
          Length = 298

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S            L ++  DID FK +ND +GH  GD V+  L
Sbjct: 131 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLTGDVVLRTL 190

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      +++++A      + ++++N  I  S G  I+I
Sbjct: 191 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEDACRAGVRICQLVDNHAITHSEG-HINI 249

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 250 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 293


>gi|316933824|ref|YP_004108806.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           DX-1]
 gi|315601538|gb|ADU44073.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           DX-1]
          Length = 861

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 56/163 (34%), Positives = 85/163 (52%), Gaps = 13/163 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFFDIDYFKQINDNFGHPVG 151
           +RI  L+  D L+GL N S+F   LG   E      +L++++ DID FK +ND  GHPVG
Sbjct: 423 SRIHHLAHYDDLTGLPNRSSFRKHLGDALELIEPGDQLALLYIDIDEFKIVNDTLGHPVG 482

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQIN 209
           D+++  ++++L        +V RLGG+EFA   A   +     A L   LR+  + +   
Sbjct: 483 DQLLKCIAERLQRCLAQADYVARLGGDEFAVVMADATTVRDLVATLQLALRETFDCAGHV 542

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           IS   SI I ++       +   +  +I +AD ALY AK  GR
Sbjct: 543 ISPDASIGIALAPE-----NGREVDDLIAKADLALYAAKSEGR 580


>gi|258514935|ref|YP_003191157.1| diguanylate cyclase with PAS/PAC sensor [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778640|gb|ACV62534.1| diguanylate cyclase with PAS/PAC sensor [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 512

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 14/165 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           ++ L+  D L+G+ N   F       +S    YN   S++  D+D+FKQINDN+GH  GD
Sbjct: 344 LNHLASRDALTGVYNRRYFAELSSLELSKSRRYNMPASLIILDLDFFKQINDNYGHQAGD 403

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINI 210
            V+  ++D       +   +GR GGEEF      +  ++  +++N   +I+ N  S +  
Sbjct: 404 TVLKEIADICRKSIRSIDILGRYGGEEFVIFLPNTKLEDCRMVSN---RILNNIASAVIC 460

Query: 211 SSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
             G SI +T S G +  E    E +   +  ADQALY AK  GRN
Sbjct: 461 YEGKSIKVTASIGTSGVEFVSDENLDHFLKTADQALYQAKLDGRN 505


>gi|296135034|ref|YP_003642276.1| diguanylate cyclase/phosphodiesterase [Thiomonas intermedia K12]
 gi|295795156|gb|ADG29946.1| diguanylate cyclase/phosphodiesterase [Thiomonas intermedia K12]
          Length = 801

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 13/201 (6%)

Query: 69  LSLVIISITISLLLGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
           L+++    T+ + +   S +++K+   L  ++  + + +  D L+GL N   F+  L   
Sbjct: 167 LTVLAFGATLMMTVEGFSRALIKDNLRLTKAFKALRRFALRDELTGLANRRIFLDHLNEL 226

Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                N+ L+I   D+D FK +ND  GH +GD+++  +  +L  V      + R GG+EF
Sbjct: 227 MQRRPNQTLTIGLMDLDRFKSVNDRLGHIIGDQLLVAVGQRLRGVLREGDLLARFGGDEF 286

Query: 181 AAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STII 237
                G S+EQ+ + +A  L   IE     I  G S+ I +S G+  +    P+   T++
Sbjct: 287 VVLLPGYSTEQQLSYIAKRLVNCIEAP--FIIQGNSLQIGLSLGLVVQQPDAPVDAQTLV 344

Query: 238 YRADQALYVAKKSGRNRVVCF 258
            RAD A+Y AKK+GR +   F
Sbjct: 345 RRADMAMYAAKKNGRQQYRIF 365


>gi|229514151|ref|ZP_04403612.1| sensory box/GGDEF family protein [Vibrio cholerae TMA 21]
 gi|229348131|gb|EEO13089.1| sensory box/GGDEF family protein [Vibrio cholerae TMA 21]
          Length = 627

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 18/174 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKL--SIVFFDIDYFKQINDNFGH 148
           NR+ +LS  D L+ L N   F  ++         Y ++   S+   DID+FK+IND FGH
Sbjct: 458 NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSSLAIIDIDHFKRINDKFGH 517

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+  ++  +        F+ R+GGEEFA     +S +EA  + N +R       +
Sbjct: 518 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVR-------L 570

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +I+S     +T+S G+ + C     S    RAD ALY +K SGRN++   + +E
Sbjct: 571 HIASLHHQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTAME 622


>gi|281417537|ref|ZP_06248557.1| diguanylate cyclase with TPR repeats [Clostridium thermocellum JW20]
 gi|281408939|gb|EFB39197.1| diguanylate cyclase with TPR repeats [Clostridium thermocellum JW20]
          Length = 1826

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 8/130 (6%)

Query: 128  KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            ++SI+  DID FK INDN+GH  GD++++ + + L+          R GGEEF      +
Sbjct: 1516 QMSIIMIDIDKFKSINDNYGHQKGDEILSKVGNILLKNIRPTDICCRYGGEEFVIILPDT 1575

Query: 188  SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQAL 244
               EA  LA  LR  +E +++    G    +TIS GI+  C   H    + +I +ADQAL
Sbjct: 1576 GPSEAEALAERLRSTVEKARL---MGQGNSLTISLGIS--CYPKHGSIRNELIEKADQAL 1630

Query: 245  YVAKKSGRNR 254
            Y AK+SGRNR
Sbjct: 1631 YHAKESGRNR 1640


>gi|39998060|ref|NP_954011.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
 gi|39985005|gb|AAR36361.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
 gi|298507001|gb|ADI85724.1| sensor diguanylate cyclase, PAS domain-containing [Geobacter
           sulfurreducens KN400]
          Length = 315

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 8/161 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+ + N      SL S  E++        I+F D+D+FKQIND  GH  GD
Sbjct: 135 LQRLALCDPLTTIANRRYVEMSLNSRLEEMRRYGWHFGILFLDVDHFKQINDTHGHDTGD 194

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  ++  LV    +   VGR GGEEF A     S ++   +A+  R ++E S   +  
Sbjct: 195 RVLKMVAKTLVNSARSFDVVGRWGGEEFIAVLANISRRQLPRIADRFRHLVEQSSFRLDD 254

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
              + +T+S G       + + +++ RAD  +Y +K++GRN
Sbjct: 255 -RLLRVTVSVGATMSHLDDTVESLVQRADTLMYRSKQAGRN 294


>gi|33602551|ref|NP_890111.1| hypothetical protein BB3576 [Bordetella bronchiseptica RB50]
 gi|33576990|emb|CAE34070.1| putative conserved membrane protein [Bordetella bronchiseptica
           RB50]
          Length = 540

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 12/174 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQIND 144
           ++ +++   + ++ Q S  D L+GLLN      ++ +    +  ++++  DID FK IND
Sbjct: 345 AVRRKIGTKFEQLRQDSLTDPLTGLLNRRGLEEYLRNTPWQDGAMTVLALDIDRFKIIND 404

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+VI  L+  L     T   + RLGGEEFA         +A  LA  +R+ IE
Sbjct: 405 THGHAAGDEVIQSLAGILRSSARTKDVLARLGGEEFAVLLPDVDVPQAPQLAERIRRSIE 464

Query: 205 NSQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRV 255
            +         +  T+S G+A  C   H   +  ++  AD+ALY AK  GRNR 
Sbjct: 465 AAPTEA----GVSYTVSIGVA--CYPAHGASLEAVMRCADEALYAAKAGGRNRT 512


>gi|317970197|ref|ZP_07971587.1| diguanylate cyclase [Synechococcus sp. CB0205]
          Length = 159

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 78/145 (53%), Gaps = 12/145 (8%)

Query: 120 SSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
             +G +N+      +   DID FK IND +GHP GD+VI  LS     V  +   +GRLG
Sbjct: 4   QQIGQFNQNHCLCVVALIDIDRFKSINDTYGHPAGDEVICQLSTLFRDVIPSGDLIGRLG 63

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER-----CHKE 231
           G+EFA   L S+E+ AA+L + LR+ +      ++ G  +  T+S G+A+      C+  
Sbjct: 64  GDEFAVLMLESAEEAAAVLES-LRRQVAARSWRLNDGSLVQFTLSIGMADSRLARVCN-- 120

Query: 232 PISTIIYRADQALYVAKKSGRNRVV 256
            I  ++  AD  LY AK +G N +V
Sbjct: 121 -IDELLAAADVGLYAAKGNGGNNLV 144


>gi|298291635|ref|YP_003693574.1| diguanylate cyclase [Starkeya novella DSM 506]
 gi|296928146|gb|ADH88955.1| diguanylate cyclase [Starkeya novella DSM 506]
          Length = 381

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 7/154 (4%)

Query: 107 DCLSGLLNHSAFISS-----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ LLN   F        +  +    S++F DID+FK+IND  GH  GD VI  + + 
Sbjct: 228 DHLTPLLNRRGFEEEANRRLVALHGAPASLIFCDIDHFKKINDGHGHAAGDAVIRAVGEL 287

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +          GR+GGEEF         ++A  LA  LR  I    + ++   +  +  S
Sbjct: 288 IAGELRREDCAGRIGGEEFVILLARGGLEDARALAERLRTRI--GALEVAPLAAGALAAS 345

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            GIAE    EP+  ++ RAD+ LY AK+ GRN+V
Sbjct: 346 FGIAEAGPDEPLDEVMERADERLYRAKRGGRNQV 379


>gi|294637645|ref|ZP_06715924.1| sensory box/GGDEF family protein [Edwardsiella tarda ATCC 23685]
 gi|291089200|gb|EFE21761.1| sensory box/GGDEF family protein [Edwardsiella tarda ATCC 23685]
          Length = 452

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 92/186 (49%), Gaps = 23/186 (12%)

Query: 88  SILKELFISYNRISQLSR-------IDCLSGLLNHSAFISS----LGSYNEKLSIVFFDI 136
           + L+EL     ++ +L++       ID L+G+ N  + I      L      +++  FD+
Sbjct: 264 TALRELAAQREQLERLNQALTLQANIDYLTGIRNRRSLIQQFAAMLAQSGSLVALALFDL 323

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAIL 195
           DYFK  ND +GH  GD+ + + +D L   F  P   +GR GGEEF    L S+E     L
Sbjct: 324 DYFKHYNDTYGHQAGDEALVYFADALRHHFREPESLIGRFGGEEF--IVLCSAEHACGAL 381

Query: 196 A--NDLRKIIENSQINISSGPSIHITISAG--IAERCHKEP--ISTIIYRADQALYVAKK 249
           A  + LR+ ++        G   H+T+S G  +  R    P     +++ AD+ LY AK 
Sbjct: 382 ARLDSLRETLDYGSDKALQG---HLTVSIGCVLLPRQSVTPNDFDALVHHADEMLYQAKN 438

Query: 250 SGRNRV 255
           SGRNR+
Sbjct: 439 SGRNRL 444


>gi|257094363|ref|YP_003168004.1| diguanylate cyclase with hemerythrin-like metal-binding
           domain-containing protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046887|gb|ACV36075.1| diguanylate cyclase with hemerythrin-like metal-binding domain
           protein [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 483

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 83/173 (47%), Gaps = 13/173 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL  +   + Q++  D L+G  N           +  L  Y++ LS++  DID+FK IN
Sbjct: 152 QELQQTVVELEQVAGTDKLTGAWNRRRIEECVRSEMDRLNRYDQPLSLLVVDIDHFKAIN 211

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+V+  ++  L         + R GGEEF      +    AA+LA  LR   
Sbjct: 212 DQHGHGAGDQVLQAVTALLQSRLRGTDALARWGGEEFVVVCPNTGRSTAALLAERLR--- 268

Query: 204 ENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              QI  +  P I  +T+S G AE    +       RAD+ALY AK  GRN+V
Sbjct: 269 --GQIASADFPLIGQLTVSIGAAECSPGDTWEEWFQRADEALYRAKTGGRNQV 319


>gi|171319581|ref|ZP_02908678.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           MEX-5]
 gi|171095192|gb|EDT40187.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           MEX-5]
          Length = 516

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 11/163 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           I  L+R D L+GL N     + LG          +  L++++ D+D FK IND FGH  G
Sbjct: 338 IRHLARHDALTGLPNRHELHAELGRRLAHRPRVPSPALAVMYLDLDGFKAINDRFGHQAG 397

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++++L           R+GG+EF  A   ++ Q  +ILA  + + I ++   +S
Sbjct: 398 DEVLTLVAERLGKTLPPGELAARIGGDEFVVAIDDTTMQACSILAARIIRQI-SAPYTLS 456

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
            G ++ + IS GIA +  H  P   +I +AD ALY AK  G+ 
Sbjct: 457 IGATVSLGISIGIALDDGHGSP-DELIRQADSALYDAKSGGKG 498


>gi|188586921|ref|YP_001918466.1| diguanylate cyclase with GAF sensor [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351608|gb|ACB85878.1| diguanylate cyclase with GAF sensor [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 597

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 8/175 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGS----YNEK-LSIVFFDIDYFKQINDNFGHP 149
           + + ++  L+  D  + L N+  F   L      Y E+ L+++  DID FK  ND FGHP
Sbjct: 392 LHHQKVEDLAVTDEKTNLYNYRYFYKQLEQAIYDYPERSLTMLMIDIDDFKLYNDRFGHP 451

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI- 208
            GD+V+  +S  L           R GGEEF+   LG+   EA  +A  +R  I N    
Sbjct: 452 AGDEVLEIISKLLKDNIRDRDIACRYGGEEFSVLLLGARGIEAEKIAERIRSAIANYPFP 511

Query: 209 NISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYV-AKKSGRNRVVCFSDI 261
                P + +T+S G AE       S  ++ ++DQALY+ +KK G+NRV  F  I
Sbjct: 512 GDEKTPKVKLTVSIGGAEYPQDGTSSMDLMRKSDQALYLGSKKQGKNRVSMFKKI 566


>gi|71906348|ref|YP_283935.1| response regulator receiver modulated diguanylate cyclase
           [Dechloromonas aromatica RCB]
 gi|71845969|gb|AAZ45465.1| response regulator receiver modulated diguanylate cyclase
           [Dechloromonas aromatica RCB]
          Length = 322

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 104/211 (49%), Gaps = 20/211 (9%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G +  L + +S V++   +  +L   +    +E+   + ++ +++ +D L+G+ N   F 
Sbjct: 115 GADDFLYKPVSEVVLLAKVRAMLRIATRQ--QEICAVHRQLKEIAILDSLTGIPNRRHFD 172

Query: 120 SSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD----KVIAFLSDQLVVVFGT 168
            +L +  ++       LSIV  D+D+FKQ ND +GH  GD     V + LS+ L  V  T
Sbjct: 173 DTLAAEWKRCIRTETPLSIVISDVDFFKQFNDIYGHQAGDVCLKAVASSLSESLFRVEDT 232

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
              V R GGEEF A   G+    A  +A  +R+   +  I    G    I+ S G+A  C
Sbjct: 233 ---VARYGGEEFVAILPGTDANGAYAVAERMRQSARDLCIPHERGIDGRISCSFGVASTC 289

Query: 229 ---HKEPISTIIYRADQALYVAKKSGRNRVV 256
               K P   ++  AD  LY AK++GRNRV 
Sbjct: 290 PSADKAP-QQLLRTADAGLYAAKRAGRNRVA 319


>gi|324114240|gb|EGC08213.1| GGDEF domain-containing protein [Escherichia fergusonii B253]
          Length = 452

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 78/161 (48%), Gaps = 15/161 (9%)

Query: 107 DCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N S F + L        N+   ++  DID+FK +ND +GHP GDKVI  + D 
Sbjct: 285 DPLTNIFNRSYFFNELKGQVNSGDNKPFCVMIMDIDHFKSVNDTWGHPEGDKVIKAVVDI 344

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216
           +         + R+GGEEF         +E   LA  +RK +E     N Q  I+   +I
Sbjct: 345 IGKSIRPDDVLARVGGEEFGVMLTHLERKEGEELAERIRKNVEQLTDNNPQYAIAQKVTI 404

Query: 217 HITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
            I +     +  H       IYR AD ALY AK +GRN+V+
Sbjct: 405 SIGVVVTQGDVLHPND----IYRLADNALYNAKATGRNKVI 441


>gi|313498686|gb|ADR60052.1| GGDEF domain-containing protein [Pseudomonas putida BIRD-1]
          Length = 343

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 94/193 (48%), Gaps = 13/193 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSR-IDCLSGLLNHSAFISSLGSYNEK--- 128
           ++S T SL     +   LK      +R++ ++   D L+GL N  AF  +  + + +   
Sbjct: 142 VVSATQSLSSALTTAWRLKHEMQRAHRLAMVASCTDELTGLNNRRAFFDNASAQHVRCRD 201

Query: 129 ----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
               ++++  D+D+FKQIND FGH  GD+V+  +   +          GRLGGEEFA   
Sbjct: 202 TGTFMAVLMLDVDHFKQINDTFGHAAGDQVLQRIGAAISTSLRDNDIAGRLGGEEFAILL 261

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQA 243
             +    A  +A  LR  I    +N    P   +T S G+A  +     +  ++  AD A
Sbjct: 262 PNTPPDTAIEVAERLRARIAKLCVN-EQHP---VTASIGLAFAKAPATELGALLSSADSA 317

Query: 244 LYVAKKSGRNRVV 256
           +Y++K SGRNRV 
Sbjct: 318 MYLSKVSGRNRVT 330


>gi|225376136|ref|ZP_03753357.1| hypothetical protein ROSEINA2194_01773 [Roseburia inulinivorans DSM
           16841]
 gi|225212031|gb|EEG94385.1| hypothetical protein ROSEINA2194_01773 [Roseburia inulinivorans DSM
           16841]
          Length = 360

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 104/204 (50%), Gaps = 12/204 (5%)

Query: 64  ILVENLSLVII--SITISLLLGYISGSILKELFISYN-RISQLSRIDCLSGLLNHSAFIS 120
           +L++ L+ + I   IT  +++       +++  + YN ++ +L+ +D L+GL N  +   
Sbjct: 157 VLIQILNTIFIFAQITAVMIIFTKDAQKMEQKLVRYNTKLQKLASVDALTGLWNRRSMWE 216

Query: 121 SLGS--YNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
            + +  Y+ ++      SI   DID+FK+IND +GH  GDKV+  ++   +    T   V
Sbjct: 217 YIRAVEYDYEVGNAGFVSIAIADIDFFKKINDTYGHDAGDKVLKAVAGLFMDKMKTYGRV 276

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232
            R GGEEF     G +   A     ++   I    +   +   I IT++ G+ E    + 
Sbjct: 277 CRWGGEEFLFVFYGRNGDAAYDALQEIYDEIHRLTVPYEN-EEIRITMTFGLEEYDQNDG 335

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
           + T I RAD+ LY  K++GR+++V
Sbjct: 336 METAIRRADEKLYQGKETGRDKIV 359


>gi|218233425|ref|YP_002368848.1| putative sensory box/GGDEF family protein [Bacillus cereus B4264]
 gi|228960311|ref|ZP_04121964.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296504538|ref|YP_003666238.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
 gi|218161382|gb|ACK61374.1| putative sensory box/GGDEF family protein [Bacillus cereus B4264]
 gi|228799335|gb|EEM46299.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296325590|gb|ADH08518.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
          Length = 430

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ ID L+ + N   F   L          +EK++I+ FDID FK +ND +GH 
Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRNDEKIAIILFDIDNFKTVNDTYGHD 320

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 321 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 379

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +G S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 380 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 425


>gi|125973335|ref|YP_001037245.1| diguanylate cyclase [Clostridium thermocellum ATCC 27405]
 gi|125713560|gb|ABN52052.1| diguanylate cyclase [Clostridium thermocellum ATCC 27405]
          Length = 1826

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 8/130 (6%)

Query: 128  KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            ++SI+  DID FK INDN+GH  GD++++ + + L+          R GGEEF      +
Sbjct: 1516 QMSIIMIDIDKFKSINDNYGHQKGDEILSKVGNILLKNIRPTDICCRYGGEEFVIILPDT 1575

Query: 188  SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQAL 244
               EA  LA  LR  +E +++    G    +TIS GI+  C   H    + +I +ADQAL
Sbjct: 1576 GPSEAEALAERLRSTVEKARL---MGQGNSLTISLGIS--CYPKHGSIRNELIEKADQAL 1630

Query: 245  YVAKKSGRNR 254
            Y AK+SGRNR
Sbjct: 1631 YHAKESGRNR 1640


>gi|330502902|ref|YP_004379771.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328917187|gb|AEB58018.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 644

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 91/179 (50%), Gaps = 12/179 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L++L  +  R+++L+R D L+GL N       L           + L+I+  D+D+FKQ+
Sbjct: 460 LQQLSNANLRLAELNRRDGLTGLFNRQTLSEELARACARAERSRQSLAILMMDLDHFKQV 519

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRK 201
           ND  GH  GD  +   + ++     +   + R GGEEF  A L S++   A+ LA  LR+
Sbjct: 520 NDRHGHLAGDACLRHAAQRIQQRLRSSDLLARFGGEEF-VALLDSTDLTGALDLAEQLRE 578

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCF 258
            I  +  +     SI +++S G+      +P      +  AD+ALY AK  GRNRVV +
Sbjct: 579 DIARTPCSYQQ-QSIPLSLSIGLHAGVPSDPCCGEHWLELADRALYRAKSDGRNRVVSY 636


>gi|309780685|ref|ZP_07675426.1| periplasmic sensor diguanylate cyclase (GGDEF domain) [Ralstonia
           sp. 5_7_47FAA]
 gi|308920367|gb|EFP66023.1| periplasmic sensor diguanylate cyclase (GGDEF domain) [Ralstonia
           sp. 5_7_47FAA]
          Length = 585

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 9/163 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           +S+++  D L+ LLN  AF    G+  +        ++++ FDID+FK+IND +GH VGD
Sbjct: 405 LSRMAETDPLTQLLNRRAFEDRAGAMCKSPQPKARLIALIMFDIDHFKRINDTYGHAVGD 464

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  ++        +   V R+GGEEFA      S  +A  +A+ LR  I    +   +
Sbjct: 465 EALRTVARLCRAEGPSADMVARIGGEEFAVMVWADSLAQARAVADHLRHRIAEVTVPTGT 524

Query: 213 GPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRN 253
                +T S G+  A       +  ++ RAD  LY AK +GRN
Sbjct: 525 DLPCRMTASFGVAAAPAADGPQLEPLLRRADHLLYAAKLAGRN 567


>gi|153000773|ref|YP_001366454.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|151365391|gb|ABS08391.1| diguanylate cyclase [Shewanella baltica OS185]
          Length = 342

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 10/177 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
           G  ++ L      +S  +  D L+ L N  A+  S+         +  + S++  DID F
Sbjct: 162 GQEVQNLKSEMENLSLAAMTDQLTSLHNRRAYELSIQDQIYLPQDHQTRCSLLLIDIDNF 221

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND +GH  GDKV+A+++  L        FV R GGEEF      +   +A  +A +L
Sbjct: 222 KAFNDTYGHLTGDKVLAYVALALKQCVRGDDFVARYGGEEFVVVLPNTHFHDALQVAENL 281

Query: 200 RKIIENSQINISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           R+ I   ++ I     +    IT+S G+A     +   T+  RAD+ALY AK  GRN
Sbjct: 282 RERISERRLTIGKDKKLSLGAITVSIGLASLQQGDDAETLFSRADKALYQAKAEGRN 338


>gi|160875482|ref|YP_001554798.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|217973268|ref|YP_002358019.1| diguanylate cyclase [Shewanella baltica OS223]
 gi|304408814|ref|ZP_07390435.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|307302817|ref|ZP_07582572.1| diguanylate cyclase [Shewanella baltica BA175]
 gi|160861004|gb|ABX49538.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|217498403|gb|ACK46596.1| diguanylate cyclase [Shewanella baltica OS223]
 gi|304352635|gb|EFM17032.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|306913177|gb|EFN43599.1| diguanylate cyclase [Shewanella baltica BA175]
 gi|315267669|gb|ADT94522.1| diguanylate cyclase [Shewanella baltica OS678]
          Length = 342

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 10/177 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
           G  ++ L      +S  +  D L+ L N  A+  S+         +  + S++  DID F
Sbjct: 162 GQEVQNLKSEMENLSLAAMTDQLTSLHNRRAYELSIQDQIYLSQDHQTRCSLLLIDIDNF 221

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND +GH  GDKV+A+++  L        FV R GGEEF      +   +A  +A +L
Sbjct: 222 KAFNDTYGHLTGDKVLAYVALALKQCVRGDDFVARYGGEEFVVVLPNTHFHDALQVAENL 281

Query: 200 RKIIENSQINISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           R+ I   ++ I     +    IT+S G+A     +   T+  RAD+ALY AK  GRN
Sbjct: 282 RERISERRLTIGKDKKLSLGAITVSIGLASLQQGDDAETLFSRADKALYQAKAEGRN 338


>gi|30022131|ref|NP_833762.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 14579]
 gi|229047736|ref|ZP_04193316.1| Sensory box/GGDEF family protein [Bacillus cereus AH676]
 gi|29897688|gb|AAP10963.1| Sensory box/GGDEF family protein [Bacillus cereus ATCC 14579]
 gi|228723528|gb|EEL74893.1| Sensory box/GGDEF family protein [Bacillus cereus AH676]
          Length = 431

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ ID L+ + N   F   L          +EK++I+ FDID FK +ND +GH 
Sbjct: 262 YQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRNDEKIAIILFDIDNFKTVNDTYGHD 321

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 322 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 380

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +G S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 381 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 426


>gi|269966127|ref|ZP_06180217.1| hypothetical protein VMC_16470 [Vibrio alginolyticus 40B]
 gi|269829274|gb|EEZ83518.1| hypothetical protein VMC_16470 [Vibrio alginolyticus 40B]
          Length = 361

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 9/171 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NE------KLSIVFFDIDYFKQINDN 145
           L I   ++  L+  D L+G+ N   F+  + S  NE         +   D+D FK +ND 
Sbjct: 184 LHIQIMKMEHLATTDDLTGIPNRREFMRQIESRLNEYRIQGIDFHVAILDLDNFKSLNDR 243

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GDK +    + +         + R+GGEEFA      S Q+A      +R  +E 
Sbjct: 244 FGHDAGDKSLIHAVNTIKSHLLDCDLLARVGGEEFAIVLRSRSSQQALDTLETIRNALET 303

Query: 206 SQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
           + +   SG  +  T S G+ + C   +    ++ RAD ALY AK++GRNRV
Sbjct: 304 TTVQ-HSGCDMSFTASIGVTQVCRLDDSFEPLVKRADLALYKAKETGRNRV 353


>gi|261253187|ref|ZP_05945760.1| GGDEF family protein [Vibrio orientalis CIP 102891]
 gi|260936578|gb|EEX92567.1| GGDEF family protein [Vibrio orientalis CIP 102891]
          Length = 323

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 15/168 (8%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNE---------KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           S  D L+GLLN       L    +          + +   D+D+FK IND FGH +GD+V
Sbjct: 142 SERDKLTGLLNRRTLEERLTRCFDLVPGDVDGLNMWVAIIDLDHFKNINDTFGHMIGDEV 201

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   + Q+   F     + R GGEEF        +Q+      + R +IE  +      P
Sbjct: 202 LLLFAQQMQNYFCNNEQLFRFGGEEFVIIFPPQEKQQVLNTLENFRSLIEQYRF-----P 256

Query: 215 SIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            ++ +T S G+      + + TI+  AD+ALY AK+SGRN++ C+ D+
Sbjct: 257 QVNKVTFSCGLCVISRTQYLPTILDHADKALYFAKESGRNQIQCYEDL 304


>gi|256005442|ref|ZP_05430405.1| diguanylate cyclase and serine/threonine protein kinase with TPR
            repeats [Clostridium thermocellum DSM 2360]
 gi|255990582|gb|EEU00701.1| diguanylate cyclase and serine/threonine protein kinase with TPR
            repeats [Clostridium thermocellum DSM 2360]
 gi|316940432|gb|ADU74466.1| diguanylate cyclase with TPR repeats [Clostridium thermocellum DSM
            1313]
          Length = 1826

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 8/130 (6%)

Query: 128  KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            ++SI+  DID FK INDN+GH  GD++++ + + L+          R GGEEF      +
Sbjct: 1516 QMSIIMIDIDKFKSINDNYGHQKGDEILSKVGNILLKNIRPTDICCRYGGEEFVIILPDT 1575

Query: 188  SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQAL 244
               EA  LA  LR  +E +++    G    +TIS GI+  C   H    + +I +ADQAL
Sbjct: 1576 GPSEAEALAERLRSTVEKARL---MGQGNSLTISLGIS--CYPKHGSIRNELIEKADQAL 1630

Query: 245  YVAKKSGRNR 254
            Y AK+SGRNR
Sbjct: 1631 YHAKESGRNR 1640


>gi|153002516|ref|YP_001368197.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|151367134|gb|ABS10134.1| diguanylate cyclase [Shewanella baltica OS185]
          Length = 605

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 10/177 (5%)

Query: 89  ILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQIND 144
           +L++  +S N ++ +++  D L+GL N   F   L +  +  +   ++  D+DYFK  ND
Sbjct: 424 VLQQALVSANTQLKEMAETDELTGLANRRPFTERLEAVLQTKTPAGLLMLDVDYFKSYND 483

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
            +GH  GD V+  ++D LV     P    + R+GGEEFA      S  +   +A  L  +
Sbjct: 484 TYGHIEGDLVLKRVADALVQCDILPHNALLARIGGEEFALVVEHVSPAQLTAIATQLCYL 543

Query: 203 IENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E   I   + P   +TIS G      ++     +  ++ RAD  LY AK  GRNRV
Sbjct: 544 VEQLSIPHQASPLAVVTISIGCVFLPLDKVSGLKMPDVLRRADVCLYRAKDKGRNRV 600


>gi|295106345|emb|CBL03888.1| diguanylate cyclase (GGDEF) domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 327

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 15/168 (8%)

Query: 95  ISYNR-ISQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           ++Y++ + + + +D ++GL NH AF      +L       +    D+D FK +ND  GHP
Sbjct: 164 LAYSKALERRAELDPMTGLFNHVAFEGHVCEALARGASGGTFFMIDLDDFKLVNDTLGHP 223

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA---AALGSSEQEAAILANDLRKIIENS 206
            GD+VI   +D L  VF    +VGR+GG+EFAA     L  ++ EA       R ++E  
Sbjct: 224 EGDRVIVEFADVLSDVFAQDAYVGRMGGDEFAAFVECPLSVAQAEAKA-----RTLVE-- 276

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +    S   + +  S G+A     +    + + AD+ALY +K++G+ R
Sbjct: 277 RWTACSDGRVRLGCSVGLASVARDQTFFDLYHAADKALYASKRNGKGR 324


>gi|222112638|ref|YP_002554902.1| diguanylate cyclase [Acidovorax ebreus TPSY]
 gi|221732082|gb|ACM34902.1| diguanylate cyclase [Acidovorax ebreus TPSY]
          Length = 342

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 7/173 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           +EL  +  +I +L+  D L+GL N    +  +           + L +   D+D+FK +N
Sbjct: 167 RELAAAVEQIRELAIRDELTGLPNRRCMLEMMRLEHARAQRSRQPLLLAQLDLDHFKAVN 226

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD  +   +  +         + R GGEEF      +   +   L   +R  +
Sbjct: 227 DTHGHAAGDVALQSFAQTVHGCVRASDLLARWGGEEFLLLMANTHPADGTRLLERVRATV 286

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             + + +  G  + +T+S G+AE    E  + ++ RAD ALY AK+ GRNRV+
Sbjct: 287 AATPVALPGGTQLSLTVSVGLAELAPGESTAALLQRADAALYGAKRLGRNRVL 339


>gi|170289593|ref|YP_001739831.1| diguanylate cyclase [Thermotoga sp. RQ2]
 gi|170177096|gb|ACB10148.1| diguanylate cyclase [Thermotoga sp. RQ2]
          Length = 443

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 12/176 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L EL+    ++ +++  D L+GL N + F       +      N  LS +  D+D FK
Sbjct: 246 ALLFELYEEKEKLKEIAHRDSLTGLFNRAFFNEWIQDQVRKAQFQNVPLSFIMIDVDNFK 305

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           QIND +GH  GDKV+ F++  +     +  F  R GG+EF      +S+Q+A  +A+ +R
Sbjct: 306 QINDTYGHLTGDKVLRFVARCISDSIRSSDFAVRYGGDEFLVVLYNTSKQQAEQVASRIR 365

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + I N     S    + + IS G+AE    +     + +AD+ +Y  K+  ++ VV
Sbjct: 366 EKIRN-----SDELGVDVDISYGVAELKPGDNYLKFLQKADEEMYGMKRERKSPVV 416


>gi|145298067|ref|YP_001140908.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850839|gb|ABO89160.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 511

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 85/164 (51%), Gaps = 31/164 (18%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI---AFLSD 160
           D L+GL N       +++L   N +  +   DID FK+IND +GHP+GD V+   A L +
Sbjct: 361 DALTGLYNRRHLEETLATLHKDNHQYILAIIDIDNFKRINDTYGHPIGDAVLKRTAQLGN 420

Query: 161 QLVVVFGTPMFVGRLGGEEFAA----AALGSSEQ-----EAAILANDLRKIIENSQINIS 211
           QL+    T   + R GGEEF A      + S++Q      A++   D R+          
Sbjct: 421 QLLEEHAT---LCRFGGEEFVAIFEQTDIASAQQLMELWRASMGQQDWRE---------- 467

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             P + ++ S GIAE     P S ++ RAD ALY AK++G+NR+
Sbjct: 468 --PGLSVSFSGGIAESLDTPPDS-VMARADAALYQAKQTGKNRL 508


>gi|119896627|ref|YP_931840.1| PAS/PAC/GGDEF-domain-containing protein [Azoarcus sp. BH72]
 gi|119669040|emb|CAL92953.1| PAS/PAC/GGDEF-domain containing protein [Azoarcus sp. BH72]
          Length = 420

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 87/179 (48%), Gaps = 16/179 (8%)

Query: 88  SILKELFISYNRISQLSRI---DCLSGLLNHSAFISSL-----GSYNE--KLSIVFFDID 137
           S+ K+L     R   L  I   D L+GL N  A   +L      ++ E   LS++  DID
Sbjct: 240 SVSKDLTERIERERALQEIASRDPLTGLYNRRAGEQALELQVQAAHAEGTALSLIIGDID 299

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK IND  GHP GD+V+A + + L     +     R GGEEF           A  LA 
Sbjct: 300 HFKSINDRHGHPAGDRVLAGVGEALRGAVRSRDLAVRWGGEEFVVLVPECGAARALELAE 359

Query: 198 DLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            LR  +   Q      P++  +T+S G+A     E  + ++ RAD+ALY AK  GR+RV
Sbjct: 360 RLRSSVAGLQF-----PAVGRVTMSLGLATLVAGETAAGLVMRADRALYRAKHGGRDRV 413


>gi|77920093|ref|YP_357908.1| GGDEF domain-containing protein [Pelobacter carbinolicus DSM 2380]
 gi|77546176|gb|ABA89738.1| FOG: GGDEF domain containing protein [Pelobacter carbinolicus DSM
           2380]
          Length = 367

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 89/170 (52%), Gaps = 15/170 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S L+R+D L+ + N  AF  +L             LS+V  DID FK+ ND++GH  GD
Sbjct: 188 LSHLARVDALTQIPNRRAFDEALQAEWGRLAREEGPLSLVLCDIDCFKKYNDHYGHQAGD 247

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQIN 209
           KV+  +++ L      P     R GGEEFA     +  + A  +A   R+ +E+   Q  
Sbjct: 248 KVLRRVAEALADCARRPADLASRYGGEEFALLLPQTPLEGALSVAEKARQAVEDLALQHP 307

Query: 210 ISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            SS   I +T+S G+A      H  P +T+I  AD+ALY AK + RNRVV
Sbjct: 308 TSSVKPI-LTLSLGVASVIPSLHIAP-TTLIESADKALYQAKNADRNRVV 355


>gi|78358088|ref|YP_389537.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78220493|gb|ABB39842.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 398

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 87/181 (48%), Gaps = 25/181 (13%)

Query: 100 ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S ++R D L+GL N   F+ +       + S    LS++  DID+FK++ND +GH  GD
Sbjct: 201 LSHMARTDPLTGLNNRRFFMEAARAEVERMQSSGRPLSLLMLDIDHFKRVNDTWGHDAGD 260

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN------- 205
            V+  LS  L           RLGGEEFA     +   EA   A  LR+ +         
Sbjct: 261 MVLKQLSCCLAETMRGQDVCARLGGEEFAVLLPETGHAEACRAAETLRQAVAGMAFAGHG 320

Query: 206 ----SQINI----SSGPSI--HITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
               S + +    S+G ++     +  G+A   C  + +  ++ RAD ALY AKK+GRNR
Sbjct: 321 FSVTSSLGLTTLDSAGHAVSGQRPVPGGVAVSACCGQVVEILLKRADIALYAAKKNGRNR 380

Query: 255 V 255
            
Sbjct: 381 T 381


>gi|16330352|ref|NP_441080.1| hypothetical protein sll1687 [Synechocystis sp. PCC 6803]
 gi|1652841|dbj|BAA17760.1| sll1687 [Synechocystis sp. PCC 6803]
          Length = 970

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 83/173 (47%), Gaps = 12/173 (6%)

Query: 99  RISQLSRIDCLSGLLN----HSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+   S  D L+GL N       F+  +G    YN  + ++  DID+FKQ ND  GH  G
Sbjct: 796 RLENQSIRDPLTGLFNRRYLEQFFLQEIGRAKRYNHSIGVIMGDIDHFKQFNDQLGHDAG 855

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  +   L           R GGEE       +S ++  + A  LR+ I + ++   
Sbjct: 856 DHVLKTIGRILQSNIRGSDIACRYGGEEMTIVLPQTSLEDTLVKAESLRQAIASMEVEYK 915

Query: 212 SGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                 +T+S G+A  C   H E +  II  AD+ALY AK +GRNRVV   ++
Sbjct: 916 GKELGTLTVSLGVA--CYPNHGETMVNIIQAADRALYQAKAAGRNRVVMADEV 966


>gi|332161457|ref|YP_004298034.1| putative inner membrane protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318605434|emb|CBY26932.1| GGDEF family protein [Yersinia enterocolitica subsp. palearctica
           Y11]
 gi|325665687|gb|ADZ42331.1| putative inner membrane protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330863226|emb|CBX73352.1| hypothetical protein YEW_LN48910 [Yersinia enterocolitica W22703]
          Length = 372

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 3/164 (1%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGD 152
           +Y  +   + ID L+ L N S+    L S N   +   ++  D+D+FK +ND +GH  GD
Sbjct: 186 AYFAMKDRANIDKLTQLNNRSSADYRLNSINHNRQACGLLILDLDHFKSVNDTYGHDAGD 245

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++  +   L+       FVGR GGEEF         Q   ++A  +R+ +E+  + +  
Sbjct: 246 ILLTEVGKLLMTAVRDEDFVGRYGGEEFIIITHSHDPQAIKVVAERIRQRVESLDVQLPD 305

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  +  TIS G +       +   +   D+ALY AK  GRN+VV
Sbjct: 306 GRKVKATISIGASLFLPGMSMLKALKMTDEALYQAKNQGRNQVV 349


>gi|300696967|ref|YP_003747628.1| signal transduction ggdef domain transmembrane protein [Ralstonia
           solanacearum CFBP2957]
 gi|299073691|emb|CBJ53211.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum CFBP2957]
          Length = 488

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 89/199 (44%), Gaps = 12/199 (6%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------G 123
           LV++   ++L + Y+    L+       R ++L+  D L+GL N  A    L        
Sbjct: 290 LVVLFNVVTLAMAYLFAQHLERRIEEQRRHAELAATDALTGLANRRALDERLEAEWRRAA 349

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAA 182
              + LS++  D+D+FK  ND +GHP GD  +  ++  +      P     R GGEEF  
Sbjct: 350 RERQPLSVLMIDVDHFKAYNDQYGHPDGDVALQAVARCIQANLRRPGDLAARYGGEEFCV 409

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIY 238
              GS    A ++A  +R  I+   I  +   +  +T+S G A            +T+  
Sbjct: 410 VLPGSDLGSANVVAETIRHAIQALDIPHARSDAAVLTVSIGAASGTPAAAGELRTATLTK 469

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD  LY AK SGRNR V 
Sbjct: 470 AADAQLYRAKTSGRNRTVA 488


>gi|288935650|ref|YP_003439709.1| diguanylate cyclase/phosphodiesterase [Klebsiella variicola At-22]
 gi|288890359|gb|ADC58677.1| diguanylate cyclase/phosphodiesterase [Klebsiella variicola At-22]
          Length = 718

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 110/226 (48%), Gaps = 13/226 (5%)

Query: 46  ANIFLFYIGLTP-FYGLEYILVENLSLVIIS-ITISLLLGYI--SGSILKELFISYNRIS 101
           A   L Y+   P   G E     + S+ +I+ +  SL+L +I  S   + +L     +  
Sbjct: 237 AGEVLGYLAWQPRLPGAEAAQASSGSMGLIAGVAASLILLFILFSSLGMYKLARGERQAR 296

Query: 102 QLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +++ ID LS L N  A +  L      G ++ +  +VF D+D FK +NDN+GH VGD +I
Sbjct: 297 EIAMIDWLSRLPNRRALLLRLSQVCETGKHDNQ-CVVFIDLDGFKDVNDNYGHDVGDALI 355

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L     T   + R+GG+EFA A  G    + A         +  + + +S    
Sbjct: 356 RHIASALQTRVPTGAMLARMGGDEFAMAVSGEKAIDRAAAFAWAALELLKAPVTLSK-RK 414

Query: 216 IHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSD 260
           I+I  S GIA     E  ST ++ RAD A+Y AKKSG+ R   + D
Sbjct: 415 IYIGASIGIASGAPAECSSTELFRRADIAMYHAKKSGKGRTAWYDD 460


>gi|113866435|ref|YP_724924.1| hypothetical protein H16_A0406 [Ralstonia eutropha H16]
 gi|113525211|emb|CAJ91556.1| Hypothetical protein with GGDEF domain [Ralstonia eutropha H16]
          Length = 390

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 3/129 (2%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            + LS++  D+D+FK INDN+GH  GD V+A +   +           RLGGEEF     
Sbjct: 250 GKPLSVLLCDLDFFKFINDNYGHSAGDAVLAQIGRIIAAGIRRRDIAARLGGEEFVVLLP 309

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYRADQAL 244
            +    A  LA  LR+ +E++++++   P +H +T S G+A     E +  ++ RAD  L
Sbjct: 310 DTPPDAALHLAERLRQTLESTEMDVL--PGMHTVTASFGVATLRPGEDLEALLMRADNVL 367

Query: 245 YVAKKSGRN 253
           Y AK  GRN
Sbjct: 368 YAAKNKGRN 376


>gi|104781787|ref|YP_608285.1| diguanylate cyclase [Pseudomonas entomophila L48]
 gi|95110774|emb|CAK15487.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           entomophila L48]
          Length = 519

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 10/173 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L  S  ++ +L+ ID L+GL N   F  +L             L+++  DID+FK+ N
Sbjct: 322 QQLLDSNQQLERLANIDALTGLANRRCFDETLVLEARRAQRNGTPLALLMIDIDHFKRYN 381

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGHP GD  +  ++  L      P   + R GGEE A     +    AA++A  + + 
Sbjct: 382 DTFGHPAGDACLQRVAKVLATCIRRPSDLLARYGGEEMAVILPDTDSGGAAVVAQLMLER 441

Query: 203 IENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRN 253
           + +  I+    P   +T+S G+  A     +   +++  ADQALY AK +GR+
Sbjct: 442 LAHETIDHPGSPFGRVTVSVGVSSAPGAQLDGWQSLLAAADQALYRAKDAGRD 494


>gi|15805298|ref|NP_293990.1| hypothetical protein DR_0267 [Deinococcus radiodurans R1]
 gi|6457939|gb|AAF09850.1|AE001888_3 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 511

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 109/220 (49%), Gaps = 12/220 (5%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102
           + ++   L   G++P +  + I +  ++L ++ +     +G+ S  + ++L      +  
Sbjct: 289 MIVSGFLLLRSGVSPQFPHKQIEIWTVALFVVVMLRQAFVGWESARLNQQLARQAQELHH 348

Query: 103 LSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           L+  D L+GL N +AF   L         + L++++ D++ FK +ND  GH  GD+ +A 
Sbjct: 349 LAFHDALTGLHNRAAFEDELQRQLHVPRPQPLALLYLDLNNFKPVNDTLGHAAGDQALAQ 408

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENS-QINISSGPS 215
           ++ +L        FV RLGG+EFA       +++AA  A + +R  +E   Q+       
Sbjct: 409 VAQRLQAALPAGTFVARLGGDEFAVLLTSIPDEDAAWAAEEQIRAALERPMQLGEH---V 465

Query: 216 IHITISAGIAERCHKEP-ISTIIYR-ADQALYVAKKSGRN 253
           +H++ + G+      E  +  I++R ADQA+Y  K S  +
Sbjct: 466 VHLSAAVGVTLAPAGEAVVPEILWREADQAMYRVKHSASD 505


>gi|33597703|ref|NP_885346.1| hypothetical protein BPP3175 [Bordetella parapertussis 12822]
 gi|33574131|emb|CAE38460.1| putative conserved membrane protein [Bordetella parapertussis]
          Length = 540

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 12/174 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQIND 144
           ++ +++   + ++ Q S  D L+GLLN      ++ +    +  ++++  DID FK IND
Sbjct: 345 AVRRKIGTKFEQLRQDSLTDPLTGLLNRRGLEEYLRNTPWQDGAMTVLALDIDRFKIIND 404

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+VI  L+  L     T   + RLGGEEFA         +A  LA  +R+ IE
Sbjct: 405 THGHAAGDEVIQSLAGILRSSARTKDVLARLGGEEFAVLLPDVDVPQAPQLAERIRRSIE 464

Query: 205 NSQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRV 255
            +         +  T+S G+A  C   H   +  ++  AD+ALY AK  GRNR 
Sbjct: 465 AAPTEA----GVSYTVSIGVA--CYPAHGASLEAVMRCADEALYAAKAGGRNRT 512


>gi|86147497|ref|ZP_01065808.1| GGDEF family protein [Vibrio sp. MED222]
 gi|85834665|gb|EAQ52812.1| GGDEF family protein [Vibrio sp. MED222]
          Length = 422

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 90/166 (54%), Gaps = 18/166 (10%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDK 153
           S+ +  D L+G+LN  A    L   ++       KLS+++ DIDYFK +ND +GH +GD 
Sbjct: 262 SEKAHRDELTGILNRHAIRDWLKMQSQQVKQGHGKLSMIYLDIDYFKSVNDKYGHLMGDH 321

Query: 154 VIAFLSDQLVV---VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           ++   S  +VV   +  T   V R GGEEF      +   EA   A  +R ++  SQ   
Sbjct: 322 ILREFS--MVVGSSISATDKLV-RWGGEEFIVFCPETEAGEAQRKAEKIRLLV--SQHLW 376

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             G S  +T S GIAE   +E ++  I RAD+ALY AK SGRN+V+
Sbjct: 377 IHGDS--LTCSIGIAE-MKQERVTETIARADEALYQAKHSGRNQVI 419


>gi|30249141|ref|NP_841211.1| hypothetical protein NE1154 [Nitrosomonas europaea ATCC 19718]
 gi|30180460|emb|CAD85065.1| Domain of unknown function, DUF9:HAMP domain [Nitrosomonas europaea
           ATCC 19718]
          Length = 555

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 81/164 (49%), Gaps = 9/164 (5%)

Query: 102 QLSRIDCLSGLLNHSAF----ISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +LS  D L+ L N +      I  L  +   +    ++  D+D+FK IND  GH  GDK+
Sbjct: 385 KLSITDGLTSLYNRAKLNTILIEQLARFKRNDRTFCLLMIDVDHFKTINDKLGHITGDKI 444

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  L+    T  +  R GG+EF A    ++   A   A  +R  +  +   +   P
Sbjct: 445 LITVASALLKSIRTIDYAARYGGDEFMAILTETNSSAAIKTAERIRSEVSAACSALEEHP 504

Query: 215 SIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVC 257
            I IT+S GI +  H +     +I RAD ALY AKK GRNRV C
Sbjct: 505 -IQITLSIGITQSHHDDTTPGDLIARADVALYEAKKRGRNRVYC 547


>gi|325276663|ref|ZP_08142393.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas sp. TJI-51]
 gi|324098207|gb|EGB96323.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas sp. TJI-51]
          Length = 451

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 81/157 (51%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +  L           + LS    DID+FK+IND  GHP+GD+VI  L+
Sbjct: 292 DSLTGLYNHTHILQLLEDCSFRARREQQPLSFAMLDIDHFKKINDRHGHPMGDRVIKSLA 351

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L        F+GR GGEEFA     ++ + A  + +++R+   +  I  +    +  T
Sbjct: 352 LFLKQRLRKTDFIGRYGGEEFAIVMPNTALEAAHKVLDEIRRRFADI-IYPAQPQDLQCT 410

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            SAG+ +        T+   AD+ALY AK +GRN VV
Sbjct: 411 FSAGVVQMDEGLDALTMASAADEALYRAKHAGRNCVV 447


>gi|317053094|ref|YP_004119448.1| diguanylate cyclase [Pantoea sp. At-9b]
 gi|316953421|gb|ADU72892.1| diguanylate cyclase [Pantoea sp. At-9b]
          Length = 459

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 11/177 (6%)

Query: 87  GSILKELFISYNRISQLSR-IDCLSGLLNHS------AFISSLGSYNE-KLSIVFFDIDY 138
           G+ ++ LF   N +S +    D L+ LLN            SL   N   LS+   D+D+
Sbjct: 283 GTYMEMLF---NDVSHMQDGKDALTNLLNKRYLPIVLKHEVSLAMENHLPLSVAIIDVDF 339

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++ND +GH VGD+ +  +++ L        +V R GGEEF    + +   EA  L   
Sbjct: 340 FKKVNDEWGHSVGDRALTHIANLLSDNIRASDYVFRYGGEEFMIVLVEAGRSEAYTLLER 399

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +R+I+ ++     SG  + +T+S G          + ++ RAD ALY AK++GRNR+
Sbjct: 400 IRRIVSSTPFEAVSGKILPLTVSIGYTVHDGHPDYNQLLNRADVALYQAKRNGRNRI 456


>gi|330446058|ref|ZP_08309710.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490249|dbj|GAA04207.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 276

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 81/159 (50%), Gaps = 7/159 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           S +D L+GL N SAF  SL  Y  K    F DID+FK+IND +GH +GD+ I   +  L 
Sbjct: 116 SSLDVLTGLPNRSAF-KSLKPYRSKQVFCFLDIDHFKRINDTYGHDIGDRAIRAFAHCLS 174

Query: 164 VVFGTPMFVGRLGGEEFAAAALG--SSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                     R GGEEF        S E +  ++   LR+ I+   I+I   P    T+S
Sbjct: 175 QNIRKSDIAFRWGGEEFLLILREGISEEIDPFLILESLRRRIQ--AIDIIDIPK--FTVS 230

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            G  +      +  +I +AD ALY +K++GRN+V  + D
Sbjct: 231 IGYCDYDDNVDVKDLINKADLALYESKRTGRNKVTRYKD 269


>gi|309701798|emb|CBJ01110.1| putative signal transduction protein [Escherichia coli ETEC H10407]
          Length = 261

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S       +    L ++  DID FK +ND +GH  GD V+  L
Sbjct: 94  SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLTGDVVLRTL 153

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      +++++A      + ++++N  I  S G  I+I
Sbjct: 154 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEDACRAGVRICQLVDNHAITHSEG-HINI 212

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 213 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 256


>gi|308050711|ref|YP_003914277.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
 gi|307632901|gb|ADN77203.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
          Length = 514

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 94/182 (51%), Gaps = 18/182 (9%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           S+++ L     ++SQL+R D L+GL N  A           L  +   L+++  DID+FK
Sbjct: 319 SLMRMLAQQREQLSQLARTDALTGLANRRAMEEFLDEEWRRLCRHQRGLALMMVDIDHFK 378

Query: 141 QINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           Q ND+FGH  GD+V+A ++  L  V         R GGEEF  A       E   LA  +
Sbjct: 379 QFNDHFGHGTGDEVLAKVARVLESVTRRGGELASRWGGEEFVLAITEPKRDELERLAEVV 438

Query: 200 RKIIENSQINIS-SGPSIHITISAGIA-ERCHKEPIS------TIIYRADQALYVAKKSG 251
            + I   Q+ IS SG S  +T+S GIA     ++P++       ++ +AD+ALY  K +G
Sbjct: 439 AQRI--GQLPISASGISQRLTVSIGIAFVPAGQDPVALGLNLNEMMEQADRALYRVKSAG 496

Query: 252 RN 253
           R+
Sbjct: 497 RD 498


>gi|212637114|ref|YP_002313639.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212558598|gb|ACJ31052.1| GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 623

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 76/129 (58%), Gaps = 4/129 (3%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +S++ FDID FK IND++GH +GD  I   + ++         +GR+GGEEF      +S
Sbjct: 490 VSVIIFDIDNFKSINDHYGHHIGDLTIQATTKRIQRWLKEQDLLGRIGGEEFLIILPDTS 549

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYV 246
            +EAA ++  +RK + +       G  + +TIS GIA   H++   +S ++  ADQALY 
Sbjct: 550 GEEAAAISERIRKAVASQPFQF-DGIKLELTISLGIA-VLHEQATTLSELVIEADQALYK 607

Query: 247 AKKSGRNRV 255
           AK SG+N+V
Sbjct: 608 AKFSGKNKV 616


>gi|324113280|gb|EGC07255.1| GGDEF domain-containing protein [Escherichia fergusonii B253]
          Length = 311

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 6/165 (3%)

Query: 104 SRIDCLSGLLNHSAFISS-----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S     L +  +K  ++  DID FK +ND  GH +GD V+  L
Sbjct: 129 SNMDILTGLPGRRVLDESFDRQLLNAEPDKFYLLLLDIDRFKSVNDTLGHLIGDVVLRTL 188

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           ++ L         V R GGEEF      S++ +A +    + ++I  +QI    G  +HI
Sbjct: 189 AENLATWMRHNESVYRYGGEEFVIMIKASTDVDACMAGLRICELIAGNQIAYPQG-ELHI 247

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T +AGI+     E +  ++ R+D+A+Y  K +GRNR +   + E 
Sbjct: 248 TATAGISRAKPGETLDVVMGRSDRAMYQGKLTGRNRCMFMDENEQ 292


>gi|229111519|ref|ZP_04241070.1| Sensory box/GGDEF family protein [Bacillus cereus Rock1-15]
 gi|229129325|ref|ZP_04258296.1| Sensory box/GGDEF family protein [Bacillus cereus BDRD-Cer4]
 gi|229146619|ref|ZP_04274986.1| Sensory box/GGDEF family protein [Bacillus cereus BDRD-ST24]
 gi|228636789|gb|EEK93252.1| Sensory box/GGDEF family protein [Bacillus cereus BDRD-ST24]
 gi|228653930|gb|EEL09797.1| Sensory box/GGDEF family protein [Bacillus cereus BDRD-Cer4]
 gi|228671901|gb|EEL27194.1| Sensory box/GGDEF family protein [Bacillus cereus Rock1-15]
          Length = 415

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ ID L+ + N   F   L          +EK++I+ FDID FK +ND +GH 
Sbjct: 246 YQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRNDEKIAIILFDIDNFKTVNDTYGHD 305

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 306 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 364

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +G S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 365 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 410


>gi|121726265|ref|ZP_01679555.1| GGDEF family protein [Vibrio cholerae V52]
 gi|121631211|gb|EAX63584.1| GGDEF family protein [Vibrio cholerae V52]
          Length = 489

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 12/188 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSI 131
           + ++L+  +++G +L  L   ++R   +QL+  D ++GLLN     S L    +++ L+I
Sbjct: 306 LVVALVYLFLTG-VLIYLNTRWDRQHYAQLAARDPMTGLLNRRGMESFLKGKRHSQYLAI 364

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQ 190
              DID FKQIND +GH +GD+VI ++ +Q+     +   V R GGEEF         EQ
Sbjct: 365 AVLDIDDFKQINDAYGHDMGDRVICYIGEQIENHIRSSDAVARFGGEEFVVYVTAKEKEQ 424

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAK 248
              I+      +   S + +  G     TIS GI   E         +   AD+ LYVAK
Sbjct: 425 ITRIMQRIFDAVCRESPLILEPG----FTISGGIEVVESTTDRSFEDLFKAADEKLYVAK 480

Query: 249 KSGRNRVV 256
            SG+N++V
Sbjct: 481 TSGKNQLV 488


>gi|271499872|ref|YP_003332897.1| diguanylate cyclase [Dickeya dadantii Ech586]
 gi|270343427|gb|ACZ76192.1| diguanylate cyclase [Dickeya dadantii Ech586]
          Length = 519

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 110/228 (48%), Gaps = 43/228 (18%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR-----------------ID 107
           L EN+S ++I++ + L + ++   +LK++  +      +SR                 ID
Sbjct: 297 LKENISAIVINLMVLLAMFFLGNFVLKQVRQTVKNKDAISRLHQEESDKNKILQKLALID 356

Query: 108 CLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+ L N   F      SL    ++   LS++  D+D+FK+ ND +GH +GD+ +    +
Sbjct: 357 PLTKLANRRRFDLYLEQSLNRARDEGGPLSLIMLDVDFFKRYNDTYGHVLGDRCL----N 412

Query: 161 QLVVVFGT-PM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-----NI 210
           QL  V  + P+       R GGEEFA    G + ++AA+      K++EN +        
Sbjct: 413 QLGSVLNSLPLPDNALAARYGGEEFAIILPGMNGEQAAVYG---EKVVENIRCCALPHEA 469

Query: 211 SSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVV 256
           S  P   +T+S G+    +  P  I  +   ADQALY+AKK GRNR V
Sbjct: 470 SLLPEQVVTVSVGVYSHSNDNPCDIQRLKEGADQALYLAKKKGRNRCV 517


>gi|229826369|ref|ZP_04452438.1| hypothetical protein GCWU000182_01741 [Abiotrophia defectiva ATCC
           49176]
 gi|229789239|gb|EEP25353.1| hypothetical protein GCWU000182_01741 [Abiotrophia defectiva ATCC
           49176]
          Length = 746

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 10/169 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
           +++  LS +D L+ + N   F   +  Y +K       LS+  FDIDYFK  ND++GH  
Sbjct: 563 HKLEALSYLDGLTQISNRRDFEKKILGYLQKSREQGISLSLFMFDIDYFKFYNDSYGHLE 622

Query: 151 GDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD  +  ++  +   F     +  R GGEEF AA LG +E+E+ +L N +R+ +    I 
Sbjct: 623 GDNALKTVATIIQKHFSEAGGISARFGGEEFIAACLGLNEEESILLGNKIREDVFAQDIL 682

Query: 210 ISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVV 256
               P   ++IS GI+     E +  S ++  AD +LY AK+ G+NRVV
Sbjct: 683 NEKAPLKKLSISIGISYYNGLEELKKSFVMRWADVSLYQAKQDGKNRVV 731


>gi|213619026|ref|ZP_03372852.1| hypothetical protein SentesTyp_22195 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 152

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 3/137 (2%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            +  S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF     
Sbjct: 9   RQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEFCIVLP 68

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQA 243
           G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +   AD+ 
Sbjct: 69  GATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQSLADKR 128

Query: 244 LYVAKKSGRNRVVCFSD 260
           LY AK+SGRNR +C SD
Sbjct: 129 LYYAKQSGRNR-ICASD 144


>gi|69953820|gb|AAZ04316.1| sensory box histidine kinase [Thermotoga sp. RQ2]
          Length = 449

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 12/176 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L EL+    ++ +++  D L+GL N + F       +      N  LS +  D+D FK
Sbjct: 252 ALLFELYEEKEKLKEIAHRDSLTGLFNRAFFNEWIQDQVRKAQFQNVPLSFIMIDVDNFK 311

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           QIND +GH  GDKV+ F++  +     +  F  R GG+EF      +S+Q+A  +A+ +R
Sbjct: 312 QINDTYGHLTGDKVLRFVARCISDSIRSSDFAVRYGGDEFLVVLYNTSKQQAEQVASRIR 371

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + I N     S    + + IS G+AE    +     + +AD+ +Y  K+  ++ VV
Sbjct: 372 EKIRN-----SDELGVDVDISYGVAELKPGDNYLKFLQKADEEMYGMKRERKSPVV 422


>gi|302670397|ref|YP_003830357.1| GGDEF domain-containing protein [Butyrivibrio proteoclasticus B316]
 gi|302394870|gb|ADL33775.1| GGDEF domain-containing protein [Butyrivibrio proteoclasticus B316]
          Length = 589

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 13/173 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  + + + Q +  D L+GL N         + I++  +    + +   DID FK +ND
Sbjct: 418 ELRQANDELRQAADTDALTGLSNRRVIDKVVRSTIATFKTMGIDIVLGIADIDDFKVVND 477

Query: 145 NFGHPVGDKVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
            +GH  GDK++  +SD L   +       +GR GGEEF       S +EA  L +++R+ 
Sbjct: 478 TYGHAEGDKILVAISDMLNEQICRIPSSLIGRWGGEEFLFMCPRVSIEEARDLLDEIRQK 537

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           I +++     G   H TIS G+ E  + +    +  RADQALY AK SG+NR+
Sbjct: 538 IADTEF----GAIGHRTISVGMTEFKNDDSADDVFCRADQALYEAKGSGKNRI 586


>gi|206579319|ref|YP_002238717.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Klebsiella pneumoniae 342]
 gi|206568377|gb|ACI10153.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Klebsiella pneumoniae 342]
          Length = 718

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 108/225 (48%), Gaps = 11/225 (4%)

Query: 46  ANIFLFYIGLTP-FYGLEYILVENLSLVIIS-ITISLLLGYI--SGSILKELFISYNRIS 101
           A   L Y+   P   G E     + S+ +I+ +  SL+L +I  S   + +L     +  
Sbjct: 237 AGEVLGYLAWQPRLPGAEAAQASSGSMGLIAGVAASLILLFILFSSLGMYKLARGERQAR 296

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +++ ID LS L N  A +  L    E        +VF D+D FK +NDN+GH VGD +I 
Sbjct: 297 EIAMIDWLSRLPNRRALLLRLSQVCETGKHDIQCVVFIDLDGFKDVNDNYGHDVGDALIR 356

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++  L     T   + R+GG+EFA A  G+   + A         +  + + +S    I
Sbjct: 357 HIASALQTRVPTGAMLARMGGDEFAMAVSGAKAIDRAAAFAWAALELLKAPVTLSK-RKI 415

Query: 217 HITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSD 260
           +I  S GIA     E  ST ++ RAD A+Y AKKSG+ R   + D
Sbjct: 416 YIGASIGIASGAPAECSSTELFRRADIAMYHAKKSGKGRTAWYDD 460


>gi|218530666|ref|YP_002421482.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
 gi|218522969|gb|ACK83554.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
          Length = 508

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 96/187 (51%), Gaps = 12/187 (6%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE---KLSI 131
           ++LL  + G  L+        +++L++ D L+GL N     + F  + G+       L++
Sbjct: 320 TVLLSLLFGRELRRSAAMQAELARLAQTDVLTGLPNRRHFETVFAQAWGTSRRTGAPLAL 379

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQ 190
           +  D D+FK+ ND +GH VGD V+  L+D L      P   V R+GGEEF A  L ++++
Sbjct: 380 ILIDADHFKRYNDRYGHAVGDAVLRGLADSLSASVRRPGDLVARVGGEEF-AVLLPATDR 438

Query: 191 EAAILANDL--RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           + A+  ++   R I   +  ++  GP   +T+S G+A          +  RAD ALY AK
Sbjct: 439 DGAMRVSETIHRAITGFAMPSVGIGPGT-VTVSLGLAVDSGGGTAEDLYRRADAALYEAK 497

Query: 249 KSGRNRV 255
             GRN+ 
Sbjct: 498 AGGRNQT 504


>gi|91774784|ref|YP_544540.1| diguanylate cyclase [Methylobacillus flagellatus KT]
 gi|91708771|gb|ABE48699.1| diguanylate cyclase [Methylobacillus flagellatus KT]
          Length = 469

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 118/244 (48%), Gaps = 17/244 (6%)

Query: 32  SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK 91
           +IF SI  A +  + ++    I  TPF    + +   LSL   +  +++L+  +S    +
Sbjct: 216 TIFLSI--AALSHLCHVSHLLIDNTPFSA-NWYMAHLLSLFSFTTLLAVLILQLS-QFTR 271

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +L  S+  + + +  D L+G+ N   F  +              +S++  DID+FK  ND
Sbjct: 272 DLADSHAYLMEKAHKDSLTGIYNRGYFDETAELEWRRAQRNGTPISLLMLDIDHFKGYND 331

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            FGH  GDK +  ++  L      P  FV R GGEEF      ++ +    +A  L   +
Sbjct: 332 QFGHVKGDKCLKKIAQALHANMQRPGDFVARFGGEEFVVLLPATTAEGCHAMAQKLHLAV 391

Query: 204 ENSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  ++ IS+G    +++S G A          I+ ++ +AD ALY AK+ GRNR+V + D
Sbjct: 392 Q--KLKISAGDHRRVSVSIGHATWNGPYENGSINELLSQADLALYTAKRLGRNRIVRYED 449

Query: 261 IENN 264
           + ++
Sbjct: 450 LAHS 453


>gi|78223628|ref|YP_385375.1| diguanylate cyclase [Geobacter metallireducens GS-15]
 gi|78194883|gb|ABB32650.1| diguanylate cyclase (GGDEF domain) [Geobacter metallireducens
           GS-15]
          Length = 353

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 92/176 (52%), Gaps = 11/176 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +R+  LS  D L+GL N   F     + +     +  S++  D+D FK++ND +GH  GD
Sbjct: 181 DRLKNLSMRDHLTGLYNRRVFEAMLEVEARKRTTKPFSLLLIDLDDFKRVNDTYGHGAGD 240

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  ++  L + F     V R GGEEF      +S+  A ++A   R+ +    + ++ 
Sbjct: 241 QVLVAVAKMLRLSFRKSDVVSRYGGEEFGVLLPDTSQDSARVVAERFRQNVATLSLPVNK 300

Query: 213 GPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
              I  T+S GIA    R   E ++ +I  AD+ALY AK +G+NR VC S +  N+
Sbjct: 301 -EKIMPTVSVGIASVTLRLGIE-VADVIEEADRALYQAKVTGKNR-VCSSLLGENS 353


>gi|325294684|ref|YP_004281198.1| diguanylate cyclase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065132|gb|ADY73139.1| diguanylate cyclase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 547

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 7/158 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           ++ L R + +  L+      S    Y+   S++  DID FK+IND +GH +GDKV+  ++
Sbjct: 394 LTDLYRRELVKELIEKEFHRSKRYGYH--FSVLMIDIDDFKKINDTYGHLLGDKVLKKVA 451

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + +           R GGEEF      ++ + A  +A+ +RK +E ++I+      I  +
Sbjct: 452 EIIKNELRKSDIPIRYGGEEFLIILPHTNLEAARKIADRIRKAVEKTEID-----GIKTS 506

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A+      +  II +ADQALY AK+ G+N+VV 
Sbjct: 507 VSIGVADNSLSRKLEDIIKKADQALYTAKRMGKNKVVV 544


>gi|307320013|ref|ZP_07599435.1| diguanylate cyclase [Sinorhizobium meliloti AK83]
 gi|306894390|gb|EFN25154.1| diguanylate cyclase [Sinorhizobium meliloti AK83]
          Length = 414

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 12/180 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL  +  R+ +L++ D L+G+ N    + +L              +++  DID FK +ND
Sbjct: 229 ELADANARLERLAKTDPLTGIANRRWMMETLNRLWSTGAERRPGTAMLMCDIDDFKSLND 288

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GH  GD+ +  ++  +   V      V R GGEEF     G++E+ A   A  +R  +
Sbjct: 289 RLGHAEGDRCLVKVAGIIQSSVRRNRDHVARYGGEEFLVVLPGANEEAAVATAERIRASV 348

Query: 204 ENSQI-NISSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNRVVCFS 259
           E + + N +S  + ++T+S G+A +   E I     +  +AD ALY+AK++GRNRVV + 
Sbjct: 349 EAASLPNPASRVAPYVTLSIGVAAQAPGEEIVAPEKLQNQADAALYLAKQAGRNRVVLYQ 408


>gi|261340900|ref|ZP_05968758.1| putative GGDEF domain protein [Enterobacter cancerogenus ATCC
           35316]
 gi|288316954|gb|EFC55892.1| putative GGDEF domain protein [Enterobacter cancerogenus ATCC
           35316]
          Length = 513

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 104/203 (51%), Gaps = 17/203 (8%)

Query: 72  VIISITISLLLGYISGSILKELFISY----NRISQLSRI-----DCLSGLLNHSAF---I 119
           V+++I  ++  G +S +   E  +S+    N+  +L+ +     D L+G  N  AF   +
Sbjct: 315 VLMNIINAIKTGDVSQAPRLESMLSHTIQSNKERELAYVRQATHDALTGCKNRRAFDNDM 374

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ-LVVVFGTPMFVGRLGGE 178
           + L + ++  ++   DID FK IND +GH  GD V+  ++ + L V+    + V R GGE
Sbjct: 375 AELMNNHQPFALALVDIDNFKSINDTWGHLSGDIVLRNVAREGLQVMQPHSVSVYRYGGE 434

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EFA        + +  L    R  +E  +    +   +H+T SAG+ E    EP+   + 
Sbjct: 435 EFAVIFQAERSEASRQLLEAWRSAVEQREWREDN---LHVTFSAGLGE-WQFEPLEQFVG 490

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
           R D ALY AK+ G+NR++  S+I
Sbjct: 491 RVDAALYQAKQQGKNRILLTSEI 513


>gi|255594865|ref|XP_002536183.1| conserved hypothetical protein [Ricinus communis]
 gi|223520571|gb|EEF26198.1| conserved hypothetical protein [Ricinus communis]
          Length = 394

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 12/170 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +LS+ D L+GLLN  A        +++  + +   +I+ FDID+FK IND +GH VGD
Sbjct: 207 LRRLSQTDALTGLLNRRALEDAVEELLATPTARSRGFAIIMFDIDHFKSINDRYGHAVGD 266

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+   +  L           R GGEEF       +E  A   A  LR+ +  +Q  +S 
Sbjct: 267 MVLQRTAQILGPCLRAADLFARYGGEEFIVVMGDVTEASARSTAERLRETL--AQAVVSD 324

Query: 213 GPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              + +T S G+    +C  E    ++  AD  LY AK++GRN +VC S+
Sbjct: 325 EHGLKVTASFGVDWQAQCMFENWEKLVVVADNRLYQAKRNGRN-LVCSSE 373


>gi|15641117|ref|NP_230749.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|147673586|ref|YP_001216572.1| GGDEF family protein [Vibrio cholerae O395]
 gi|153816912|ref|ZP_01969579.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|227081277|ref|YP_002809828.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|229505300|ref|ZP_04394810.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229511030|ref|ZP_04400509.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229518151|ref|ZP_04407595.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229608319|ref|YP_002878967.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254848234|ref|ZP_05237584.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255745517|ref|ZP_05419465.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262158408|ref|ZP_06029524.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|262170270|ref|ZP_06037957.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|298498791|ref|ZP_07008598.1| GGDEF family protein [Vibrio cholerae MAK 757]
 gi|9655574|gb|AAF94263.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|126512499|gb|EAZ75093.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|146315469|gb|ABQ20008.1| GGDEF family protein [Vibrio cholerae O395]
 gi|227009165|gb|ACP05377.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|227012920|gb|ACP09130.1| GGDEF family protein [Vibrio cholerae O395]
 gi|229344866|gb|EEO09840.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229350995|gb|EEO15936.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229357523|gb|EEO22440.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229370974|gb|ACQ61397.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254843939|gb|EET22353.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255736592|gb|EET91989.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262021285|gb|EEY39999.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|262029849|gb|EEY48497.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|297543124|gb|EFH79174.1| GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 489

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 12/188 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSI 131
           + ++L+  +++G +L  L   ++R   +QL+  D ++GLLN     S L    +++ L+I
Sbjct: 306 LVVALVYLFLTG-VLIYLNTRWDRQHYAQLAARDPMTGLLNRRGMESFLKGKRHSQYLAI 364

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQ 190
              DID FKQIND +GH +GD+VI ++ +Q+     +   V R GGEEF         EQ
Sbjct: 365 AVLDIDDFKQINDAYGHDMGDRVICYIGEQIENHIRSSDAVARFGGEEFVVYVTAKEKEQ 424

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAK 248
              I+      +   S + +  G     TIS GI   E         +   AD+ LYVAK
Sbjct: 425 ITRIMQRIFDAVCRESPLILEPG----FTISGGIEVVESTTDRSFEDLFKAADEKLYVAK 480

Query: 249 KSGRNRVV 256
            SG+N++V
Sbjct: 481 TSGKNQLV 488


>gi|238764807|ref|ZP_04625749.1| hypothetical protein ykris0001_29190 [Yersinia kristensenii ATCC
           33638]
 gi|238697005|gb|EEP89780.1| hypothetical protein ykris0001_29190 [Yersinia kristensenii ATCC
           33638]
          Length = 415

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 72/134 (53%), Gaps = 6/134 (4%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           Y +  S++  D+D+FK IND  GH  GD+V+ FL+  L  +      V R GGEEF    
Sbjct: 286 YGQHFSLILLDVDHFKSINDQLGHHKGDEVLIFLARTLESIIRECDIVFRWGGEEFTILL 345

Query: 185 LGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
             ++   A  LA  +R+ IE   Q N+       +T+S G+A+    E   ++  R D+A
Sbjct: 346 PSTNLDGALQLAESIRETIEMICQPNLP-----QLTVSIGVAQHQVGEDTDSLFKRMDEA 400

Query: 244 LYVAKKSGRNRVVC 257
           LY AK SGRNRV+ 
Sbjct: 401 LYRAKASGRNRVLA 414


>gi|51245978|ref|YP_065862.1| hypothetical protein DP2126 [Desulfotalea psychrophila LSv54]
 gi|50877015|emb|CAG36855.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 652

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 10/169 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFIS--------SLGSYNEKLSIVFFDIDYFKQINDNFG 147
           S  ++ +L+  D L+GL N S               S    LS+V  DIDYFK+IND  G
Sbjct: 482 SREKLQRLATTDSLTGLCNRSQLFEIAEAELERQRHSSEHNLSLVMLDIDYFKKINDAHG 541

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+   +D             R+GGEEF     G+  + A  +A   R ++E + 
Sbjct: 542 HAAGDLVLKAFADIGRKYLRDVDVFARIGGEEFIILLPGTDIKVALKIAERFRALVEKNP 601

Query: 208 INISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + ++    I  T+S G+ A    ++    +++ AD ALYVAK+ GRNRV
Sbjct: 602 VMVNE-KEIAFTVSFGVTAWNGIEQTFEEVLHEADSALYVAKEKGRNRV 649


>gi|134297395|ref|YP_001121130.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
 gi|134140552|gb|ABO56295.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
          Length = 452

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 14/188 (7%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIV 132
           +L +    + ++LF ++  + + S  D L+G  N        H+ F+ +    +E LS++
Sbjct: 265 VLAWEVTKLYQQLFEAHTTLVRSSARDGLTGAFNRSHFNDHFHTLFLQAR-RQSEPLSLL 323

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQE 191
             D+D+FK  ND FGH  GD  +  ++  L      P   V R GGEEFA     +  + 
Sbjct: 324 MVDVDHFKAYNDAFGHVKGDACLIAVAQALAGAVRRPADIVARYGGEEFAIVLPNTGARG 383

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAK 248
           A I+A++ R+ +    + + S P+  +++S G A     E +ST   +I  AD ALY AK
Sbjct: 384 ARIVADEAREAVLRLDLPMPSSPTGRVSVSIGCATVSADE-LSTPDALIEAADGALYRAK 442

Query: 249 KSGRNRVV 256
            +GRN VV
Sbjct: 443 DAGRNCVV 450


>gi|320184493|gb|EFW59297.1| hypothetical protein SGF_03332 [Shigella flexneri CDC 796-83]
 gi|332096938|gb|EGJ01927.1| cellulose synthesis regulatory protein domain protein [Shigella
           boydii 3594-74]
          Length = 312

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 10/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 119 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 178

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND F H  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 179 SVIQVDLDHFKAINDRFSHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 238

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 239 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEEAGDYDFEQLQSLADRRLYLA 298

Query: 248 KKSGRNRVVCFSD 260
           K++GRNR VC SD
Sbjct: 299 KQAGRNR-VCASD 310


>gi|297585556|ref|YP_003701336.1| 7TM domain sensor diguanylate cyclase [Bacillus selenitireducens
           MLS10]
 gi|297144013|gb|ADI00771.1| 7TM domain sensor diguanylate cyclase [Bacillus selenitireducens
           MLS10]
          Length = 615

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/179 (36%), Positives = 89/179 (49%), Gaps = 16/179 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL  +   +  LS +D L+GL N   F       +      N KL +V  DID +K  N
Sbjct: 434 EELNDTMKHLKTLSELDGLTGLPNRRMFDEDLITVVKETMDENGKLGLVMLDIDNYKNYN 493

Query: 144 DNFGHPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           D +GH  GD   K +A L  Q V+       V R GGEEFA     +SE E   LA  +R
Sbjct: 494 DFYGHLQGDDCLKEVATLFKQ-VIKEEDSAEVYRYGGEEFAVLVKEASEAETYALAEQIR 552

Query: 201 KIIENSQI-NISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           K +E + I +  S     +T+SAG+A    R    P   ++ +AD ALY AK+SG+N V
Sbjct: 553 KRVEEAAIPHEQSDVQNRLTVSAGVAVLQARDLHSP-EKLLEQADAALYQAKRSGKNTV 610


>gi|114046788|ref|YP_737338.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113888230|gb|ABI42281.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 578

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 12/200 (6%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYN 126
           + IT +L L  +  S L+ L     ++  ++  D L+G  N     S +         +N
Sbjct: 376 MPITDNLELQQMVSS-LETLKTYAAQVKAMAETDGLTGCYNRRYLDSQIKKELSYANDHN 434

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAAL 185
             LS+V FDID FK+ ND +GH  GD+ +  + D    +   P   + R GGEEF     
Sbjct: 435 MPLSVVMFDIDNFKEFNDKYGHVAGDQCLKQVVDAAKSILQRPTDILARYGGEEFTLLLP 494

Query: 186 GSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQ 242
            S  ++A  +A  LR+ I+E +  + SS  S  +TIS GIA  +       + +I  AD+
Sbjct: 495 SSHCEDAYRIAERLRETIMELAIPHQSSSHSGVVTISLGIACWQPAQSLDANLVISDADE 554

Query: 243 ALYVAKKSGRNRVVCFSDIE 262
           ALY AK++GRNR +     E
Sbjct: 555 ALYQAKQAGRNRTIALRHPE 574


>gi|326795320|ref|YP_004313140.1| response regulator receiver modulated diguanylate cyclase
           [Marinomonas mediterranea MMB-1]
 gi|326546084|gb|ADZ91304.1| response regulator receiver modulated diguanylate cyclase
           [Marinomonas mediterranea MMB-1]
          Length = 304

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 9/173 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           +L  +  ++  L+  D L+GL N   F  SL         Y+  LSI   DID+FK++ND
Sbjct: 131 QLLQANRKLEALATTDFLTGLSNRRCFERSLDDEIAKAKRYDIPLSIAILDIDHFKRVND 190

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           ++GH  GD V++ ++ +L         + R+GGEEF A  L S+  E AI+A +  +I+ 
Sbjct: 191 SYGHDAGDLVLSSVAARLQAGARKGDVLARIGGEEF-AICLPSTTLEQAIVACERYRIVL 249

Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +S+          IT+SAGIA           ++  AD+ LY AK+ GR+R+V
Sbjct: 250 SSEPLSYGCDEFTITLSAGIASMDVDHASKHDLMKAADELLYRAKQEGRDRIV 302


>gi|320194332|gb|EFW68963.1| hypothetical protein EcoM_03251 [Escherichia coli WV_060327]
          Length = 558

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKL 129
           T+ LL  Y+   ++  +++  + +   +  D L+ L N  A              +    
Sbjct: 365 TMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQMHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH VGD+V++  +  +          GR+GGEEF     G++ 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQVGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGANL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            +AA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 545 KQAGRNRV 552


>gi|308274522|emb|CBX31121.1| hypothetical protein N47_E46330 [uncultured Desulfobacterium sp.]
          Length = 341

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/127 (40%), Positives = 73/127 (57%), Gaps = 4/127 (3%)

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID FK +ND +GH  GD V++ +S+ +  V      +GR GGEEF A + GS    
Sbjct: 214 LMIDIDRFKSVNDTYGHQAGDYVLSNISEVITSVKRIEDEIGRYGGEEFYAISHGSI-HN 272

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKK 249
               A  LRK +E +   + +G  I+ITIS G+A     E +    +I  AD+ LY+AK+
Sbjct: 273 GREFAERLRKKVEKTDF-VYNGRRINITISIGVASAGELEKVDARNLIELADKRLYMAKQ 331

Query: 250 SGRNRVV 256
           SGRNR+V
Sbjct: 332 SGRNRIV 338


>gi|304412077|ref|ZP_07393687.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella baltica OS183]
 gi|307305972|ref|ZP_07585718.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella baltica BA175]
 gi|304349627|gb|EFM14035.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella baltica OS183]
 gi|306911465|gb|EFN41891.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella baltica BA175]
          Length = 1215

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 10/182 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + E  +S  RI  L+  D L+ L N  +  S L        + + +++++F D+D+FK I
Sbjct: 776 ISERKVSEERIHFLAHHDSLTLLPNRLSLQSRLEVVFREALASDSQIAVMFIDMDHFKNI 835

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH VGD+++  ++ +L  + G    V RLGG+EF  A   ++  E A LA  LR  
Sbjct: 836 NDTLGHHVGDQLLLEVARRLKNIVGDTDTVARLGGDEFVVALSNTNHDEVASLAEALRSG 895

Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +  SQ  I +  ++H + S GI+      + +  ++  AD A+Y AK +GRN    F+  
Sbjct: 896 L--SQTYIINNQALHSSPSIGISLFPTDGDSVEALMKNADMAMYRAKSAGRNNYQFFTAA 953

Query: 262 EN 263
            N
Sbjct: 954 MN 955


>gi|296273906|ref|YP_003656537.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
 gi|296098080|gb|ADG94030.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
          Length = 478

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 82/164 (50%), Gaps = 8/164 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAF----ISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVG 151
           ++  L+  D L+ L N   F      SL  +       SI+FFD+D FK +NDN+GH VG
Sbjct: 312 KLENLASYDSLTNLHNRRTFNDFFEKSLKQFKRDKIPKSIIFFDLDDFKLVNDNYGHLVG 371

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++  L +       + R GGEEF      S  ++   +A  L+   EN  I ++
Sbjct: 372 DDVLKRIAAILKLQIRDSDNIARWGGEEFLILLNNSDLEQTFDIAQKLKNCFEND-IELN 430

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +     IT S G++     + I  II RAD+ LY  K SG+NRV
Sbjct: 431 NLVKEGITASFGVSTFKEDDTIEKIISRADKTLYKVKNSGKNRV 474


>gi|209966687|ref|YP_002299602.1| diguanylate cyclase, putative [Rhodospirillum centenum SW]
 gi|209960153|gb|ACJ00790.1| diguanylate cyclase, putative [Rhodospirillum centenum SW]
          Length = 383

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 11/166 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ + +RID L+GL N           +     +   LS++  D+D+FK++ND  GH  G
Sbjct: 192 RLEEEARIDPLTGLANRRRLEEQADLEVERARRFGRPLSVLMLDLDHFKRVNDEHGHARG 251

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D +++ L+              R GG+EF A    ++  +A  LA  LR ++E     + 
Sbjct: 252 DALMSALATLCRRALRQTDLFARAGGDEFVALLPETALDDATTLAERLRTLVEAEP--LL 309

Query: 212 SGP-SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255
            GP  +  T+S G+A    H    + ++  AD ALY AK +GRNRV
Sbjct: 310 RGPVPVGATVSIGVATYVAHGRSWAAMLQAADDALYRAKAAGRNRV 355


>gi|288941124|ref|YP_003443364.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
 gi|288896496|gb|ADC62332.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
          Length = 437

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 84/166 (50%), Gaps = 13/166 (7%)

Query: 106 IDCLSGLLNHSAFISSLGSYNE--KLS-----IVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+ L N  AF   L    E  KLS     ++  D D+FK++ND +GHP GD V+  L
Sbjct: 274 LDGLTRLYNRKAFDRQLERVFELCKLSGQSACLLMIDADHFKRVNDEYGHPAGDTVLKRL 333

Query: 159 SDQLVVVFGTPM---FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
           ++      G P    FV R GGEEFAA    +S + A  LA  L   I   +I    G  
Sbjct: 334 AN--CCTKGFPRKSDFVARYGGEEFAAILQDTSLKSALPLAQRLLDTIRIMRIE-HEGLE 390

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           + IT+S GIAE          +  AD ALY AKK GR+R+V   ++
Sbjct: 391 LDITVSIGIAELGTLASAEHWLKMADGALYAAKKGGRDRIVTAPEM 436


>gi|23015028|ref|ZP_00054818.1| COG3706: Response regulator containing a CheY-like receiver domain
           and a GGDEF domain [Magnetospirillum magnetotacticum
           MS-1]
          Length = 562

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 83/157 (52%), Gaps = 11/157 (7%)

Query: 107 DCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+         +++    N KL +V  D+D FK +ND +GHP GD+V+  L+
Sbjct: 400 DGLTGLFNHTFIAQYLETSLAAARRENGKLCVVMIDVDLFKSVNDTYGHPAGDQVLVALA 459

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L     T   +GR GGEEF       S +E+  + N LR+  + +++    G      
Sbjct: 460 RLLQQRLRTNDLIGRYGGEEFVIIMQNVSLKESLTIVNGLRE--DFARLKFQCGDQFFSC 517

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T S GIA R  +     ++  AD+ALY AK++GRNR+
Sbjct: 518 TFSGGIA-RFPEIAGDRLMEAADKALYEAKQTGRNRI 553


>gi|311696781|gb|ADP99654.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [marine bacterium HP15]
          Length = 785

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 86/170 (50%), Gaps = 13/170 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+S  +  D L+ LLN  AF +SL       G  + +  ++  D+DYFK +ND  GH +
Sbjct: 612 ERLSWEATHDSLTQLLNRRAFNASLVRSLGEAGRQDARSVLMLIDLDYFKPVNDEGGHLL 671

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQI 208
           GD ++  L+D           V RLGG+EF     A G +  EA  LA  +R  +E  +I
Sbjct: 672 GDDLLKRLADLFKDAVRQSDTVARLGGDEFGIILPACGMTRAEA--LAERIRADVEALRI 729

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
               G S  +T S G+ E   ++     ++ RAD+  Y+AK  GRNRVV 
Sbjct: 730 E-HDGRSFGVTTSIGLTELTAEDSGPREVMARADEGSYIAKSRGRNRVVV 778


>gi|291565903|dbj|BAI88175.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 298

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 9/166 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +   + +L+  D L+G+ N    +            YN   S++  DID+FK IND
Sbjct: 134 ELKQALVELEKLATTDALTGIANRRHLLVLGEREFQRTHRYNNPFSVLMIDIDHFKLIND 193

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH +GDK +  ++   V         GR GGEEF      +   EA ++A  +R+ I 
Sbjct: 194 NYGHNIGDKALKIMAAVTVNALRKVDIFGRFGGEEFVVFLPETKADEALVVAERIREAIA 253

Query: 205 NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKK 249
            + I +    +IHIT+S G+      E  +  ++  AD+ALY AKK
Sbjct: 254 TTPIYVDDQ-TIHITVSIGVTIYNSSEISLDGLLMEADKALYDAKK 298


>gi|212704840|ref|ZP_03312968.1| hypothetical protein DESPIG_02907 [Desulfovibrio piger ATCC 29098]
 gi|212671802|gb|EEB32285.1| hypothetical protein DESPIG_02907 [Desulfovibrio piger ATCC 29098]
          Length = 533

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 87/176 (49%), Gaps = 13/176 (7%)

Query: 101 SQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD----K 153
           S++S +D L+G+ N  A    ++ L    + +S++  D+D FK  ND  GH  GD    +
Sbjct: 354 SRMSLMDSLTGIPNRRALDMRLADLAELRQTVSLIMLDVDLFKIYNDTLGHQEGDACLHR 413

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V   + D L    G    + R GGEEFA    G   + A  +A  LR+ +E   I     
Sbjct: 414 VAQAMRDGL---RGGDREIFRYGGEEFAVVLDGVPPEHALHVAERLRQAVEQLGIPHPGS 470

Query: 214 PSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFSDI-ENNTC 266
           P+  +TIS G+A      P  +  ++  AD ALY AK+ GRNRV    +I + + C
Sbjct: 471 PAGRVTISLGVAAVGELTPEILPRLLETADSALYSAKEHGRNRVHLAGEIVKKSAC 526


>gi|182417212|ref|ZP_02948572.1| putative diguanylate cyclase/phosphodiesterase domain [Clostridium
           butyricum 5521]
 gi|237665980|ref|ZP_04525968.1| diverse intracellular signalling/diguanylate cyclase (GGDEF) domain
           protein [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378937|gb|EDT76446.1| putative diguanylate cyclase/phosphodiesterase domain [Clostridium
           butyricum 5521]
 gi|237658927|gb|EEP56479.1| diverse intracellular signaling/diguanylate cyclase (GGDEF) domain
           protein [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 570

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 12/165 (7%)

Query: 100 ISQLSRI--DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           I +L ++  D L+ L N+       S  I     +NEK S++  DID FK IND +GH  
Sbjct: 401 IKKLEKLNTDGLTSLFNNKYIKILLSNMIDRYIYWNEKFSVIMIDIDNFKSINDTYGHLY 460

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+VI  ++  L+ +     + GR GG+EF      +SE+EA  +  D+ K I+  ++N 
Sbjct: 461 GDRVILDVATILIYISDNKGYAGRFGGDEFILILPNTSEEEAINIGKDIMKKID--RLNT 518

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +     I++S G+ E    + I   +  AD A+Y +K +G+N++
Sbjct: 519 LTESERPISLSIGVYENTC-DNIHDCMNNADSAMYKSKTNGKNQI 562


>gi|308069062|ref|YP_003870667.1| response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Paenibacillus polymyxa E681]
 gi|305858341|gb|ADM70129.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Paenibacillus polymyxa E681]
          Length = 374

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 91/187 (48%), Gaps = 11/187 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIV---FFDID 137
           Y +    +EL IS   IS++S  D L+ L NH     F      Y E+ +I+     DID
Sbjct: 189 YKTKRAQQELMISNAIISKMSMTDGLTKLYNHLSFQNFYEKALEYAEQGAIIHLALVDID 248

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK+IND +GH  GDK++  +S  +           R GGEEFA      + +EA  +  
Sbjct: 249 NFKKINDTYGHQFGDKILETISQIITEQITANDIAARYGGEEFAILMFEHTFEEAYQIVE 308

Query: 198 DLRKIIENSQINISSGPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNR 254
           ++R+ +E           + +T+S G+    E  +K+       +AD  LY AK+SG+N+
Sbjct: 309 NIRREVEKMTFQ-EKLQLVSVTVSIGLKSYTEEMNKDK-DVFFQQADDYLYQAKRSGKNK 366

Query: 255 VVCFSDI 261
           +V  + I
Sbjct: 367 IVALNHI 373


>gi|239993546|ref|ZP_04714070.1| GGDEF domain protein [Alteromonas macleodii ATCC 27126]
          Length = 371

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/132 (38%), Positives = 69/132 (52%), Gaps = 2/132 (1%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
             K S+   DID FK IND  GH  GD+V+  +S            + R GGEEF     
Sbjct: 229 KRKFSVAIADIDRFKSINDTLGHEQGDEVLRQISKVFSSRLRGQDILARWGGEEFMFIFT 288

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            + E  A     ++R I+ N+ +NI+ G  IH+T S G++E      IS  + RADQALY
Sbjct: 289 DTDEAGAVNALENIRDILNNAPLNIN-GSEIHVTSSFGVSEVNPDIDISCAVRRADQALY 347

Query: 246 VAKKSGRNRVVC 257
            AK +GR+  VC
Sbjct: 348 YAKDNGRD-CVC 358


>gi|269791775|ref|YP_003316679.1| response regulator receiver modulated diguanylate cyclase
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099410|gb|ACZ18397.1| response regulator receiver modulated diguanylate cyclase
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 917

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 65/183 (35%), Positives = 94/183 (51%), Gaps = 11/183 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-----LGSYNE--KLSIV 132
           L L  +SG+ + E+     ++  ++R D L+GLLN  A I         S  E   LS+ 
Sbjct: 733 LTLRVLSGTRVMEV---QRKLRFMARHDQLTGLLNRRAVIEMEEREMARSVREGGSLSVA 789

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID FK IND +GH  GD+V+  ++ ++         VGR GGEEF     G+S  +A
Sbjct: 790 MMDIDRFKAINDTYGHLAGDQVLREVARRVGSKLRVYDVVGRYGGEEFLLILPGASLGDA 849

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             L   +R  I  S+  +  G  I +T S G+AE   +  +  +   ADQALY+AK SGR
Sbjct: 850 KRLCERMRSAI-GSEPVLYDGLQIPVTASFGVAEFVPQLTVDQLNNLADQALYLAKASGR 908

Query: 253 NRV 255
           + V
Sbjct: 909 DAV 911


>gi|227886072|ref|ZP_04003877.1| conserved hypothetical protein [Escherichia coli 83972]
 gi|227837001|gb|EEJ47467.1| conserved hypothetical protein [Escherichia coli 83972]
 gi|307553542|gb|ADN46317.1| C-terminal part of putative diguanylate cyclase [Escherichia coli
           ABU 83972]
          Length = 135

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 77/132 (58%), Gaps = 2/132 (1%)

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID FK +ND +GH +GD V+  L+  L         V R GGEEF      ++++E
Sbjct: 1   MLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVYRYGGEEFIIIVKATNDEE 60

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A      + ++++N  I  S G  I+IT++AG++    +EP+  +I RAD+A+Y  K++G
Sbjct: 61  ACRAGVRICQLVDNHAITHSEG-HINITVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTG 119

Query: 252 RNRVVCFSDIEN 263
           RNR + F D +N
Sbjct: 120 RNRCM-FIDEQN 130


>gi|148555580|ref|YP_001263162.1| diguanylate cyclase [Sphingomonas wittichii RW1]
 gi|148500770|gb|ABQ69024.1| diguanylate cyclase [Sphingomonas wittichii RW1]
          Length = 390

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 12/173 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+G+ N   F       I +     + LS+V  DID FK IND +GH VGD
Sbjct: 220 MRTLATSDMLTGVYNRRGFEDAAERAIRNAHRQRQPLSVVVADIDGFKAINDRYGHGVGD 279

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +   + ++  +      +GR+GGEEFA   + +  Q+A  +   +R+ I    +   S
Sbjct: 280 RALRHFASRIERLVRRGDLIGRIGGEEFALLLVNTRPQDAVEVVERIRRDIAAMPV---S 336

Query: 213 GPS-IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           GP  + +T S G+   R     +++++ RAD+ALY +K  GR+RV    ++E 
Sbjct: 337 GPDRVVMTASFGLTGLRPGDISLASLLARADRALYRSKLDGRDRVTSAEELEE 389


>gi|160876864|ref|YP_001556180.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160862386|gb|ABX50920.1| diguanylate cyclase [Shewanella baltica OS195]
          Length = 672

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 78/134 (58%), Gaps = 12/134 (8%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++ FD D+FK+INDNFGH +GD+ +  ++     + G    +GR+GGEEF      +  
Sbjct: 528 SVIIFDADHFKKINDNFGHELGDRALLTIASASQALTGNKDLIGRIGGEEFLILLPNTDA 587

Query: 190 QEAAILANDLRKIIENSQINISSGPS-IHITISAGIA--------ERCHKEP-ISTIIYR 239
           + A  LA+ L+  I  S++     P+ + +T+SAG+A        E  +++   ++++ R
Sbjct: 588 ERACELAHQLQAHI--SRLGAEDLPAELKLTVSAGVATLAPQKKTENTYQDKDFASLLKR 645

Query: 240 ADQALYVAKKSGRN 253
           AD ALY AK +GRN
Sbjct: 646 ADDALYEAKNAGRN 659


>gi|242240353|ref|YP_002988534.1| diguanylate cyclase [Dickeya dadantii Ech703]
 gi|242132410|gb|ACS86712.1| diguanylate cyclase [Dickeya dadantii Ech703]
          Length = 241

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 81/151 (53%), Gaps = 4/151 (2%)

Query: 107 DCLSGLLNHSAFIS--SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+ + N SA I    L   +E+ +++  DID+FK+IND +GHP GD VI  L  ++  
Sbjct: 84  DPLTDVFNRSAIIDLIDLALEHEQAALIVLDIDHFKKINDTYGHPTGDAVICALIGRIRD 143

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           V      +GR+GGEEF     G S  +A  LA  +   + ++ ++  + P   +T S GI
Sbjct: 144 VLQGKGSIGRVGGEEFTILLDGYSLMQAVELAEHIHASLNHTPLD--ALPEYLVTASFGI 201

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +    +     +   AD ALY AK +GRNRV
Sbjct: 202 SWAPPQAHFDELYSAADIALYQAKNAGRNRV 232


>gi|148555510|ref|YP_001263092.1| diguanylate cyclase [Sphingomonas wittichii RW1]
 gi|148500700|gb|ABQ68954.1| diguanylate cyclase [Sphingomonas wittichii RW1]
          Length = 343

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 96/178 (53%), Gaps = 15/178 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-GSYNEK------LSIVFFDIDYFK 140
           ++ K+L  ++ + +     D L+GL N  A    L G++         L++   DID+FK
Sbjct: 167 AMRKDLAAAHRKANS----DPLTGLPNRRALDQHLRGAFENARRAATPLALAICDIDHFK 222

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILANDL 199
           Q ND  GH +GD+VI F++  L       +FV R GGEEF      G++ +  A L + +
Sbjct: 223 QFNDTHGHQIGDEVIKFVASSLGRAASGDVFVARYGGEEFVMVFERGAAAKAMATL-DKI 281

Query: 200 RKIIENSQINIS-SGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           R  I   ++ ++ +G S+  ++ S G+A    ++   +I+ RAD ALY AK+ GRNR+
Sbjct: 282 RAAIAARELKVTHTGQSLGRLSFSGGLAALDLQDSPGSILKRADAALYRAKQDGRNRI 339


>gi|27365600|ref|NP_761128.1| GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|27361748|gb|AAO10655.1| GGDEF family protein [Vibrio vulnificus CMCP6]
          Length = 439

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 14/183 (7%)

Query: 78  ISLLLGYISGS--ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIV 132
           I LLL    G+   L +L  +  ++ ++S +D LSGL N+  F++ +       E    V
Sbjct: 262 IPLLLAITVGACYYLYKLNKAQKKLKEISYLDPLSGL-NNRHFLAEVVKQQLPLEHYYAV 320

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK +ND +GH +GD+VI  ++  +        +  R+GGEEF       S  EA
Sbjct: 321 MLDIDHFKSVNDRYGHDIGDQVIRRVAKVVKSRIRVSDYAFRIGGEEFLLLVKTPSSNEA 380

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             +   +R+ +E    N++  P  H+T+S G      +  +   I  AD  LY AK++GR
Sbjct: 381 RQVCERIRQDVE----NMTQAP--HVTVSIGFT--ALQTQLDETIRMADSHLYEAKRNGR 432

Query: 253 NRV 255
           NRV
Sbjct: 433 NRV 435


>gi|114561281|ref|YP_748794.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114332574|gb|ABI69956.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 426

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 90/173 (52%), Gaps = 8/173 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151
           ++++L+  D L+GL N  + ++ L   +          S++  D+D+FK+IND +GH  G
Sbjct: 239 KVARLANKDQLTGLWNRHSLLNKLEEVDALWLRNGLAYSLMVLDLDHFKRINDTYGHLAG 298

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+   +D L        FV R GGEEF      ++++EA I+A  +++ I  + + + 
Sbjct: 299 DMVLKNTADILQKSLRKIDFVCRYGGEEFLIILPLTNKKEAQIVAEKVQQKINENTV-LW 357

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
               I+ T+S G A       I  ++  AD A+Y+AK  GRN +     +E++
Sbjct: 358 QKTHINTTLSIGYATCKTHLSIEQLLQLADDAMYLAKSKGRNTICSMDAMEDS 410


>gi|117923620|ref|YP_864237.1| diguanylate cyclase [Magnetococcus sp. MC-1]
 gi|117607376|gb|ABK42831.1| diguanylate cyclase [Magnetococcus sp. MC-1]
          Length = 464

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 12/178 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           L+++     +  + S  D L+ + N  A   SL         Y E LS++  D+D+FK+I
Sbjct: 274 LQQVQDDLKKAKEESLTDPLTQVANRRALFQSLTRETARTRRYGEPLSLIIIDLDHFKKI 333

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GHPVGD+V+  ++     +      + R GGEEF A    ++  +A   A  +R  
Sbjct: 334 NDTYGHPVGDRVLKEVAGHARALLRDSDTLARYGGEEFVALLPETTLPQAMEKAEQIRLS 393

Query: 203 IENSQINISSGPSIHITISAGIAE----RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +   +  +  G S+ I+ S G+A+              ++RADQALY AK  GRN V+
Sbjct: 394 VAAMRFKL-KGESLSISASLGVAQLDDGASQDANNEAFVHRADQALYRAKSGGRNCVI 450


>gi|330719540|gb|EGG98139.1| GGDEF domain protein [gamma proteobacterium IMCC2047]
          Length = 176

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 80/171 (46%), Gaps = 25/171 (14%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVV 165
           D L+GLL   A    L   N +  IV  D+D+FK+ ND  GH VGD+V+  L+ QL    
Sbjct: 5   DELTGLLGRRALNERLLRLNGRYCIVMVDVDHFKKFNDTHGHEVGDQVLKMLAGQLEKTT 64

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQE--------------------AAILANDLRKIIEN 205
            GT  +  R GGEEF     G +  +                         ND +K  + 
Sbjct: 65  GGTKAY--RYGGEEFTLIFEGKTAAQIEPHLEALRGRVADYPMQIRGNNRPNDSKKGKKQ 122

Query: 206 SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
                 SGP + +TIS G A +  K    + +I  AD+ALY AKKSGRNRV
Sbjct: 123 RAKGKGSGP-LKVTISLGAAVKTDKLRTSAQVIEAADKALYSAKKSGRNRV 172


>gi|330824934|ref|YP_004388237.1| diguanylate cyclase [Alicycliphilus denitrificans K601]
 gi|329310306|gb|AEB84721.1| diguanylate cyclase [Alicycliphilus denitrificans K601]
          Length = 561

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 96/178 (53%), Gaps = 21/178 (11%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           + L ++  R+ +LS  D L+GL N   F   L    ++       L+++  D+D+FKQ N
Sbjct: 378 EALTLANQRLEELSTTDSLTGLANRRHFDDILAKEWQRARRLRHPLALLMIDVDHFKQFN 437

Query: 144 DNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LAND 198
           D +GH  GD    +V   L  +L+    T     R GGEEF  A + S + E A+ +A  
Sbjct: 438 DTYGHLAGDDCLRQVAQILKQRLLRGSDT---AARFGGEEF--AVITSMDLEGALHIAEL 492

Query: 199 LRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRN 253
           +R+ +EN  +++    ++H+++S G++       + P + +I  AD+ALY AK++GRN
Sbjct: 493 IRQDVENHPVSVDGVDAVHVSVSIGLSALVPDGSRSP-AQLISLADEALYRAKRAGRN 549


>gi|260597954|ref|YP_003210525.1| hypothetical protein CTU_21620 [Cronobacter turicensis z3032]
 gi|260217131|emb|CBA30932.1| Uncharacterized protein yneF [Cronobacter turicensis z3032]
          Length = 445

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 13/169 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVG 151
           +IS+ +  D L+G+ + S    +L   +         L ++  D+D+FK INDN+GH  G
Sbjct: 261 QISRRANYDHLTGVYSRSGLFEALARDDNNPALAGRPLCVMLMDLDHFKSINDNYGHECG 320

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+A   ++L  + G    V R+GGEEF       +   A  LA  LR+ +    + + 
Sbjct: 321 DAVLATFGEKLRELTGDAGRVARMGGEEFVVVCPDMTLDRACQLAETLRQQVAGEPV-VC 379

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYR----ADQALYVAKKSGRNRV 255
            G ++  ++S G+  E   ++ +S    R    AD  LY +K+ GRNR 
Sbjct: 380 EGQTLSFSVSIGLGYEAAPQDRVSDTFTRLMREADSLLYQSKREGRNRT 428


>gi|146308192|ref|YP_001188657.1| diguanylate cyclase [Pseudomonas mendocina ymp]
 gi|145576393|gb|ABP85925.1| diguanylate cyclase [Pseudomonas mendocina ymp]
          Length = 518

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 83/180 (46%), Gaps = 13/180 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           +EL  +  R+  L+  D L+GL N  +F  +L             LS++  DID FK+ N
Sbjct: 321 EELLDANARLEVLASQDALTGLANRRSFDQTLEVEIRRAQRRGSPLSLMLLDIDLFKRYN 380

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD  +  ++D L      P     R GGEE A        + A  +A    + 
Sbjct: 381 DRYGHVAGDACLRAVADVLRQCMRRPGDLAARYGGEELAVILPNVDIEGAQTVARTFMQA 440

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPIST-----IIYRADQALYVAKKSGRNRVVC 257
           +E   +     P   +T+SAG+A        S+     +I  ADQALY AK +GRNR+ C
Sbjct: 441 LEQRHLAHQGSPFQRVTVSAGVASLVPDAGDSSAQALALIRAADQALYRAKSNGRNRLEC 500


>gi|330505401|ref|YP_004382270.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328919687|gb|AEB60518.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 383

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 71/134 (52%), Gaps = 1/134 (0%)

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
           LG+  + LS++  DID+FKQ NDN GH  GD+V+      L     +   +GR GGEEF 
Sbjct: 248 LGNLRQPLSLLLLDIDHFKQANDNLGHQGGDEVLKHFVRTLSANLRSNEPLGRYGGEEFI 307

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                   + A I A  LR+ +  +    S G    IT S G A   ++E +  ++ RAD
Sbjct: 308 ILLRDVDVESARITAERLRRCVAEAPYRHSQG-DYPITTSIGHATAHNQESLEQLLQRAD 366

Query: 242 QALYVAKKSGRNRV 255
            ALY AK+ GRNRV
Sbjct: 367 TALYRAKREGRNRV 380


>gi|15614797|ref|NP_243100.1| response regulatory protein (sensory transduction system) [Bacillus
           halodurans C-125]
 gi|10174853|dbj|BAB05953.1| response regulatory protein (sensory transduction system) [Bacillus
           halodurans C-125]
          Length = 314

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 8/169 (4%)

Query: 98  NRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +LSR+D L+ L+N         A I+    +    ++   DID+FK IND +GH  
Sbjct: 146 QKVDRLSRVDFLTNLMNRRDMQEKIRAEINRSIRHGRSFTLAIVDIDFFKNINDTYGHDC 205

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+      L     +  +V R GGEEF      +  +E       +R+ I  S + I
Sbjct: 206 GDHVLKHFVSTLKNSVRSSDYVSRWGGEEFLLLFPETKLEEGKRACEKIRQKINESPV-I 264

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             G SI IT + GI+E      I  +I  AD ALY  KK+G+N+VV  S
Sbjct: 265 YKGMSISITATFGISEYRPSVRIEELIKAADDALYKGKKTGKNQVVVQS 313


>gi|17230996|ref|NP_487544.1| hypothetical protein alr3504 [Nostoc sp. PCC 7120]
 gi|17132637|dbj|BAB75203.1| alr3504 [Nostoc sp. PCC 7120]
          Length = 307

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 89/173 (51%), Gaps = 12/173 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           +L +L  +   + +L+R D L+GL N   F+  + S       + E L++ +FD+D FKQ
Sbjct: 117 LLSQLKTTLINLEKLARTDNLTGLTNRGFFLDIVNSEIEKSLRHREPLTLAYFDVDNFKQ 176

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH  GD+++  ++            + RLGG+EFA     +S + A ++ + L  
Sbjct: 177 INDQFGHSFGDRLLQIIAKSTTNTLRKIDVIARLGGDEFAILLPRTSYESAEVVLHRLHT 236

Query: 202 IIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRN 253
           ++  S        ++ +T S G I      + ++ II  AD  +Y+AKK G+N
Sbjct: 237 VLLASM----KKENLSVTFSIGAITFNNPPKSVAEIIEIADNLMYLAKKKGKN 285


>gi|303245955|ref|ZP_07332237.1| serine/threonine protein kinase [Desulfovibrio fructosovorans JJ]
 gi|302492738|gb|EFL52606.1| serine/threonine protein kinase [Desulfovibrio fructosovorans JJ]
          Length = 1719

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 62/174 (35%), Positives = 89/174 (51%), Gaps = 16/174 (9%)

Query: 91   KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
            KEL      + +LS  D L+G+ N  +        I         L+I+  D+D FK +N
Sbjct: 1549 KELNRKNLALQRLSTTDQLTGVYNRRSIEDRLRHEIEHCRDNESSLAIILLDVDCFKDVN 1608

Query: 144  DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL--ANDLRK 201
            D FGH VGD V+  ++  +     +  F GR GGEEF       SE  + +L  A  LRK
Sbjct: 1609 DTFGHNVGDTVLVDIAVTIGRNVRSTDFFGRWGGEEFMVVV---SEFVSNVLPFAERLRK 1665

Query: 202  IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++E  + + ++G    +T S G+A     E  S  + RADQALY AK++GRNRV
Sbjct: 1666 VLEKKR-HPTAG---KVTASLGVALYLPGETPSQFVSRADQALYRAKENGRNRV 1715


>gi|322418716|ref|YP_004197939.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M18]
 gi|320125103|gb|ADW12663.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M18]
          Length = 312

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 102/186 (54%), Gaps = 28/186 (15%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--GSY------NEKLSIVFFDIDYF 139
           S+  EL  +  ++ +L+ ID L+GL N   ++S +  G +       E LS+V  DID+F
Sbjct: 126 SLQDELKKANEQLKRLTNIDHLTGLFNRR-YLSEILEGEFFRARRNRESLSLVIIDIDFF 184

Query: 140 KQINDNFGHPVGDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           K +ND++GH  GD V   +A L+ Q +  + +     R GGEEF     G+S +   + A
Sbjct: 185 KNVNDSYGHQNGDVVLASVAGLAQQQMRAYDS---AARYGGEEFVLVFPGTSLEGGVVAA 241

Query: 197 NDLRKIIENSQINIS-SGP--SIHITISAGIAERCHKEP----ISTIIYRADQALYVAKK 249
             LR+ +    ++ S   P   + +TISAG+A   +  P    + ++  +AD+ALY AK+
Sbjct: 242 ERLRQAV----LDFSFPAPLEDLTLTISAGVA--SYPSPLVDNVDSLFRQADEALYRAKQ 295

Query: 250 SGRNRV 255
           +GRNRV
Sbjct: 296 NGRNRV 301


>gi|228954329|ref|ZP_04116355.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229071549|ref|ZP_04204767.1| Sensory box/GGDEF family protein [Bacillus cereus F65185]
 gi|229081301|ref|ZP_04213804.1| Sensory box/GGDEF family protein [Bacillus cereus Rock4-2]
 gi|228701923|gb|EEL54406.1| Sensory box/GGDEF family protein [Bacillus cereus Rock4-2]
 gi|228711485|gb|EEL63442.1| Sensory box/GGDEF family protein [Bacillus cereus F65185]
 gi|228805261|gb|EEM51854.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 415

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ ID L+ + N   F   L          +EK++I+ FDID FK +ND +GH 
Sbjct: 246 YQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTVNDTYGHD 305

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 306 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 364

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +G S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 365 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 410


>gi|239820804|ref|YP_002947989.1| diguanylate cyclase with PAS/PAC sensor [Variovorax paradoxus S110]
 gi|239805657|gb|ACS22723.1| diguanylate cyclase with PAS/PAC sensor [Variovorax paradoxus S110]
          Length = 1007

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 8/165 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
           R+  L++ID L+GL N + F + LG   ++       +++++ DID FKQIND FGH  G
Sbjct: 831 RLVGLAQIDPLTGLANRAGFEARLGEAMDRSRSAGALMALMYLDIDGFKQINDQFGHQTG 890

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++   S +L     +     RLGG+EF     G    + A+ A     +   +   + 
Sbjct: 891 DELLKAFSGRLSQGLRSSDVRARLGGDEFTVIMEGLPHADIAVAAATKLVLAMQTPFTVE 950

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              +I++T S G+A  +      + ++ +AD+ LY AK++GRN V
Sbjct: 951 PQRTINVTASIGLAFYQGGAATSAALVKQADEMLYRAKRAGRNNV 995


>gi|89093489|ref|ZP_01166437.1| GGDEF protein [Oceanospirillum sp. MED92]
 gi|89082179|gb|EAR61403.1| GGDEF protein [Oceanospirillum sp. MED92]
          Length = 385

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 94/185 (50%), Gaps = 12/185 (6%)

Query: 81  LLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIV 132
           +LG I+G + + +L +      Q +R D L+GL N    +  L          ++ LS++
Sbjct: 199 VLGLIAGWAAVNQLNMLLGLYRQATR-DPLTGLANRRQAMEQLSGDMKLMREKSKPLSVL 257

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF--VGRLGGEEFAAAALGSSEQ 190
            FD+D FK  ND +GH  GD V+   + +++  F       V R GGEEF     G   +
Sbjct: 258 LFDLDKFKSFNDTYGHAAGDIVLQRFA-KVMRKFARKRLDLVCRYGGEEFLMVLPGLDAE 316

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +A  +A  +R    + Q+   +G  I  T S G+AE   ++ I +++  +D ALY AK +
Sbjct: 317 QAGEVAEKIRLACYDEQVKTPTGERIGFTTSIGVAELKAEDTIDSLLQHSDDALYEAKGT 376

Query: 251 GRNRV 255
           GR++V
Sbjct: 377 GRDKV 381


>gi|323186711|gb|EFZ72033.1| cellulose synthesis regulatory protein [Escherichia coli RN587/1]
          Length = 558

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKL 129
           T+ LL  Y+   ++  +++  + +   +  D L+ L N  A              +    
Sbjct: 365 TMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQMHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH VGD+V++  +  +          GR+GGEEF     G++ 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQVGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGANL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            +AA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 545 KQAGRNRV 552


>gi|291617346|ref|YP_003520088.1| YdaM [Pantoea ananatis LMG 20103]
 gi|291152376|gb|ADD76960.1| YdaM [Pantoea ananatis LMG 20103]
          Length = 526

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 90/185 (48%), Gaps = 16/185 (8%)

Query: 84  YISGSILKELFISY-NRISQLSRI-------DCLSGLLNHSAFISSLGSY---NEKLSIV 132
           Y     LK+ F++Y N I++   I       D L+ L N   F      Y     + S+ 
Sbjct: 337 YKESDRLKKSFLAYSNTINKTLAILRDDAITDHLTKLYNRRGFEQLTAPYLSAKNEHSLA 396

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            FDIDYFK+IND++GH +GDK +  ++  L     T   V R GGEEF      +   EA
Sbjct: 397 SFDIDYFKRINDHYGHDIGDKTLVAVAMFLKKGCRTNDIVCRFGGEEFVVFFPNTQISEA 456

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
             +AN +R+ I  +Q +        +TISAG+     HK  I   +   DQ LY AK  G
Sbjct: 457 ESIANRIREHIACAQFSEIG----KMTISAGVESLAHHKNDIEETLLSVDQWLYQAKHEG 512

Query: 252 RNRVV 256
           RNRVV
Sbjct: 513 RNRVV 517


>gi|229180323|ref|ZP_04307666.1| Sensory box/GGDEF family protein [Bacillus cereus 172560W]
 gi|228603070|gb|EEK60548.1| Sensory box/GGDEF family protein [Bacillus cereus 172560W]
          Length = 415

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ ID L+ + N   F   L          +EK++I+ FDID FK +ND +GH 
Sbjct: 246 YQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTVNDTYGHD 305

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 306 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 364

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +G S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 365 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 410


>gi|224371113|ref|YP_002605277.1| sensory box histidine kinase (GGDEF domain protein) [Desulfobacterium
            autotrophicum HRM2]
 gi|223693830|gb|ACN17113.1| sensory box histidine kinase (GGDEF domain protein) [Desulfobacterium
            autotrophicum HRM2]
          Length = 1268

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 58/165 (35%), Positives = 84/165 (50%), Gaps = 13/165 (7%)

Query: 99   RISQLSRIDCLSGLLNH----SAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVG 151
            ++ QLS  D L+GL N        +  +G    YN  LS++  DID FKQ+ND  GH  G
Sbjct: 1105 KLEQLSVTDRLTGLYNRMKIDDTLLEEIGRVLRYNYPLSLILMDIDLFKQVNDTHGHQAG 1164

Query: 152  DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            D V+  ++  +     +    GR GGEEF      +  + A  LA  LR+ I        
Sbjct: 1165 DAVLIQMAKTMDKNIRSTDICGRWGGEEFMVICPHTDLKGALSLAEHLRESIARQIF--- 1221

Query: 212  SGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              P  I  T S G+A+  + +  + +I RAD+A+Y+AK+ GRNRV
Sbjct: 1222 --PHVITQTGSFGVAQYGNGDSEADLIARADRAMYLAKEGGRNRV 1264


>gi|149911271|ref|ZP_01899893.1| GGDEF domain protein [Moritella sp. PE36]
 gi|149805656|gb|EDM65656.1| GGDEF domain protein [Moritella sp. PE36]
          Length = 727

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 12/169 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           ++  +L+  D L+G LN   F       I       +KLS++  DID+FK IND +GH  
Sbjct: 558 DKYRELASRDTLTGALNRRKFNLILKQEIGFAKQDKQKLSLLLLDIDHFKNINDAYGHGG 617

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+    D       +   V R+GGEEFA     ++  +A I+A  LR  +  S++ +
Sbjct: 618 GDQVLRDFYDACFNSVKSSDIVARIGGEEFAILMPETNSTQAHIIAERLRHNV--SKLQV 675

Query: 211 SSGP-SIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256
             G  +I +T+S G+A+    + ++    I   D+ALY AK +GRN V+
Sbjct: 676 PYGQDNIRLTVSIGLAQWQEYDSLNAKEFIAHTDKALYQAKDNGRNCVI 724


>gi|121591285|ref|ZP_01678580.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121546869|gb|EAX57027.1| GGDEF family protein [Vibrio cholerae 2740-80]
          Length = 377

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 12/188 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSI 131
           + ++L+  +++G +L  L   ++R   +QL+  D ++GLLN     S L    +++ L+I
Sbjct: 194 LVVALVYLFLTG-VLIYLNTRWDRQHYAQLAARDPMTGLLNRRGMESFLKGKRHSQYLAI 252

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQ 190
              DID FKQIND +GH +GD+VI ++ +Q+     +   V R GGEEF         EQ
Sbjct: 253 AVLDIDDFKQINDAYGHDMGDRVICYIGEQIENHIRSSDAVARFGGEEFVVYVTAKEKEQ 312

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAK 248
              I+      +   S + +  G     TIS GI   E         +   AD+ LYVAK
Sbjct: 313 ITRIMQRIFDAVCRESPLILEPG----FTISGGIEVVESTTDRSFEDLFKAADEKLYVAK 368

Query: 249 KSGRNRVV 256
            SG+N++V
Sbjct: 369 TSGKNQLV 376


>gi|294140613|ref|YP_003556591.1| GGDEF domain-containing protein [Shewanella violacea DSS12]
 gi|293327082|dbj|BAJ01813.1| GGDEF domain protein [Shewanella violacea DSS12]
          Length = 341

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 105/211 (49%), Gaps = 18/211 (8%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKE------LFISYNRISQLSRIDCLSGLLN 114
           LE +L    SLV  S  I     Y +G + K       L     +  Q+   D L+G+ N
Sbjct: 130 LEKVLGIVRSLVKESDDIRSSTQYFTGQLSKAQQEINALKQQLEKSEQIMLYDALTGIFN 189

Query: 115 HSAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
             AF +    SL    + L ++  DID+FK+ NDN+GH +GD+V+  ++ +L        
Sbjct: 190 RRAFDNDLRGSLSQSPDGLCLILADIDHFKEFNDNYGHQLGDQVLKVVAKRLQASCRDGA 249

Query: 171 FVGRLGGEEFA----AAALGSSEQEAAILANDLRKI-IENSQINISSGPSIHITISAGIA 225
            + R GGEEFA     + LGSS   A  +   L KI +++ + ++       IT S G+A
Sbjct: 250 KLYRYGGEEFAVIIPKSQLGSSRHLAEAMRRGLEKITLKDRRKDVRIN---KITASFGVA 306

Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +       + +I +AD+ LY AK+ GRNRV+
Sbjct: 307 QWNKNLEGAELIEQADKLLYEAKRLGRNRVM 337


>gi|189424903|ref|YP_001952080.1| diguanylate cyclase with GAF sensor [Geobacter lovleyi SZ]
 gi|189421162|gb|ACD95560.1| diguanylate cyclase with GAF sensor [Geobacter lovleyi SZ]
          Length = 356

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 12/179 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           +Y R+S+L   D L+GL N   F       +     Y  ++S++FFD+D+FK++ND FGH
Sbjct: 177 NYRRVSELVVTDDLTGLHNARHFHELLEYELERSRRYKSQVSLLFFDLDHFKEVNDRFGH 236

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VG ++IA +   +     +     R GG+E+      + +Q A  +A +L +       
Sbjct: 237 LVGSRMIAEVGHLVKRHIRSSDRAARYGGDEYVVVLPNTGKQGALSVATNLLERFRAHLF 296

Query: 209 NISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
              S   + IT S G A   +  H    +++I  AD A+Y AK++GRNRV  FS  E  
Sbjct: 297 LTDSNERVPITASFGAATFPDDAHDR--TSLIRAADSAMYEAKEAGRNRVEYFSGNETK 353


>gi|92114132|ref|YP_574060.1| diguanylate cyclase with PAS/PAC and GAF sensors [Chromohalobacter
           salexigens DSM 3043]
 gi|91797222|gb|ABE59361.1| diguanylate cyclase with PAS/PAC and GAF sensors [Chromohalobacter
           salexigens DSM 3043]
          Length = 574

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 98/196 (50%), Gaps = 12/196 (6%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---N 126
           SL+++    S  L ++  ++ ++L  +   ISQ    D L+GLLN   F  ++  +    
Sbjct: 374 SLIVVLRDRSPYLQHLR-TVTRKLAKAEEMISQ----DALTGLLNRFGFKQAIDEFMVEA 428

Query: 127 EK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
           E+    +++  DID+FK IND +GH +GD+ +  ++ +L         V R GGEEF   
Sbjct: 429 ERGVPFALLIADIDHFKDINDTYGHQLGDEALKIVASRLAEQLRDGDAVARYGGEEF-CM 487

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
            +   E     +A  +R+ +  + + +  G  + +TIS G           ++  RAD+A
Sbjct: 488 LMTVPEDRVVEVAERIRRTVAATPVTLDDGKELALTISIGATYHTPGLDEDSMFERADEA 547

Query: 244 LYVAKKSGRNRVVCFS 259
           LY AK+ GRNR V  +
Sbjct: 548 LYEAKEYGRNRTVMLN 563


>gi|260464199|ref|ZP_05812392.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075]
 gi|259030002|gb|EEW31285.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075]
          Length = 414

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 84/158 (53%), Gaps = 10/158 (6%)

Query: 104 SRIDCLSGLLNHSAF-----ISSLGSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S +D LSGL N   F     ++ LG+  +   +++V  D+D+FK IND FGH  GD+VI 
Sbjct: 235 SEVDTLSGLFNRGGFTRQAELAVLGAVRQGVPVALVIADLDHFKSINDGFGHASGDRVIE 294

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             +  L          GR+GGEEFA    G++   A + A   R       + I   P+ 
Sbjct: 295 TFAGLLREAAAGHHAAGRIGGEEFAIILTGTNLAGARLFAEGTRSAF--GTLPIDGLPAD 352

Query: 217 H-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +  T S G+AE    E ++ ++ RAD+ALY+AK +GR+
Sbjct: 353 NRCTASFGVAELHPGETVADLMRRADEALYLAKNAGRD 390


>gi|257139582|ref|ZP_05587844.1| GGDEF domain-containing protein [Burkholderia thailandensis E264]
          Length = 466

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 9/176 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L+EL  +  ++  L+  D L+G  N   FI  + +            S++  D+D FK I
Sbjct: 291 LQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQAEIARAKRDGTAFSLLALDLDNFKTI 350

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           NDN+GH VGD V+     Q +        + R+GGEEF           A+ +A  +R  
Sbjct: 351 NDNYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRTT 410

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           I N+   I  G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV 
Sbjct: 411 IANASFGI-DGTHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 465


>gi|152983813|ref|YP_001346820.1| two-component response regulator [Pseudomonas aeruginosa PA7]
 gi|150958971|gb|ABR80996.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 327

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L   D L+GL NH  F   L            +LS++  D+DYFK  ND FGH  GD
Sbjct: 148 LQRLMNSDGLTGLSNHRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGD 207

Query: 153 KVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  ++  +      +     R GGEEFA    G+S   A +LA  +R+ +E+ QI + 
Sbjct: 208 EALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHD 267

Query: 211 SSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              P  H+T+S G++        +    +I  ADQALY AK +GRN+V
Sbjct: 268 QPRPGSHLTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGRNQV 315


>gi|118588079|ref|ZP_01545489.1| putative kinase/esterase [Stappia aggregata IAM 12614]
 gi|118439701|gb|EAV46332.1| putative kinase/esterase [Stappia aggregata IAM 12614]
          Length = 486

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 101/201 (50%), Gaps = 19/201 (9%)

Query: 70  SLVIISITISLLLGYIS-------GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           ++V + + +SL LG ++       G +   L  S ++   L+  D L+GL N   F   L
Sbjct: 254 TIVPVIVILSLALGALAFGIAWRIGQLTTSLQASEHQNRYLALHDTLTGLANRLQFNRVL 313

Query: 123 GSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
            S      ++  +++  D+D FK +ND FGH  GD VI  ++++L    G P  V R+GG
Sbjct: 314 ESSVKNLPDKPFAVIHCDLDKFKAVNDTFGHAAGDIVIRTMAERLTTAVGKPGLVCRIGG 373

Query: 178 EEFAAAALGSSEQEAAILANDL-RKIIENSQ--INISSGPSIHITISAGIAERCHKEPIS 234
           +EF     GS  +E  I   DL R ++   +  + ISSG    I +S GIA        +
Sbjct: 374 DEFMVIYRGSVTREGLI---DLSRALVAAGELPVPISSGEIAQIGLSVGIAIAPKDGSTA 430

Query: 235 T-IIYRADQALYVAKKSGRNR 254
             ++ R+D ALY +KK GR R
Sbjct: 431 ELLVTRSDAALYQSKKLGRGR 451


>gi|157369976|ref|YP_001477965.1| diguanylate cyclase [Serratia proteamaculans 568]
 gi|157321740|gb|ABV40837.1| diguanylate cyclase [Serratia proteamaculans 568]
          Length = 568

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 3/157 (1%)

Query: 106 IDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +D L+ + N   F     SL + +  L+    DID FK +NDN+GH +GD+V+      L
Sbjct: 407 LDPLTNIYNRRKFFRECESLAASSYPLAFCLIDIDNFKNLNDNYGHHIGDQVLVAFGKLL 466

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
              F +     R GGEEFA      + + A  + + LR+      + ++ G  +  T S 
Sbjct: 467 QSTFRSSDIFCRYGGEEFAVILGNCTLENAREVISKLRERTHQFTLTLADGQKVRFTTSC 526

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           GIA+      + T I +AD+ALY +K +G++R+  ++
Sbjct: 527 GIAQVSDIRLLPTAIKQADEALYFSKNNGKDRIGIYT 563


>gi|70729605|ref|YP_259344.1| YaiC/YhcK/ArdA family protein [Pseudomonas fluorescens Pf-5]
 gi|68343904|gb|AAY91510.1| YaiC/YhcK/ArdA family protein [Pseudomonas fluorescens Pf-5]
          Length = 360

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 84/188 (44%), Gaps = 12/188 (6%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SI 131
            L LGYI       L      +  LSR D L+GLLNH A+   L    ++        +I
Sbjct: 162 PLALGYICYQQAVTLGRHKRELLALSRTDSLTGLLNHGAWKDQLEIEFQRCKRQAHGGAI 221

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              DID+FK IND +GH  GD V+  LS  L          GR GG+EF           
Sbjct: 222 ALIDIDHFKAINDTYGHVAGDVVLRQLSKLLRQNLRVSDQAGRYGGDEFCVILPDVPLAH 281

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKK 249
           AA L   LR       +     P++ +++S G+A     H + +   +  ADQALY AK 
Sbjct: 282 AAELMEALRGRF--GALGYEQSPALQVSLSIGLAAFNPLHDDAMG-WLNDADQALYAAKT 338

Query: 250 SGRNRVVC 257
            GRN V C
Sbjct: 339 CGRNNVTC 346


>gi|320529393|ref|ZP_08030481.1| diguanylate cyclase domain protein [Selenomonas artemidis F0399]
 gi|320138359|gb|EFW30253.1| diguanylate cyclase domain protein [Selenomonas artemidis F0399]
          Length = 591

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 18/180 (10%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL  +  R+SQL+  D L+ LLN           +         L+++  DID+FK +N
Sbjct: 411 EELNSANRRLSQLASRDALTNLLNRREMERLLQEAVRDAQENRTLLTVMLMDIDHFKGVN 470

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGDKV+  ++D +           R GG+EF     G++ + A  +   +R+ +
Sbjct: 471 DTYGHDVGDKVLLTVADAISGTIRGSDAGCRWGGDEFFVILQGATLELAGRVGERIRRRV 530

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPIS----TIIYRADQALYVAKKSGRNRVVCFS 259
           E +++        ++T+S G+A   H +P       +   AD+ALY AKK GRN V C  
Sbjct: 531 EAAKMAFDG----NVTVSIGVA---HFDPERDNELQLFKNADEALYRAKKEGRNAVYCLG 583


>gi|75762353|ref|ZP_00742230.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74490163|gb|EAO53502.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 386

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ +D L+ + N   F   L          +EK++I+ FDID FK +ND +GH 
Sbjct: 217 YQEQERLAMVDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTVNDTYGHD 276

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 277 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 335

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +G S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 336 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 381


>gi|298292287|ref|YP_003694226.1| diguanylate cyclase [Starkeya novella DSM 506]
 gi|296928798|gb|ADH89607.1| diguanylate cyclase [Starkeya novella DSM 506]
          Length = 393

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 84/182 (46%), Gaps = 10/182 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQI 142
           I+ EL     R  +L R D LSG+L+ +AF+    +        E+  +V  D+D+FK I
Sbjct: 210 IIAELMAETAR--RLER-DSLSGVLSRAAFMERAAALLAALRPEERACLVMCDLDHFKSI 266

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH  GD+VI      L          GR+GGEEF          EA      +R  
Sbjct: 267 NDRFGHAAGDEVIRAFGGVLAERASVGALCGRIGGEEFCLLLPEGDVGEAQRRIEAVRSA 326

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           ++  +  +  G  I +T S G+A     E I   + RAD ALY AK +GR+R +   D  
Sbjct: 327 MDRLRYALVPG-EIRVTASFGLAVTGRGEHIDEALRRADLALYAAKAAGRDRHMLAQDAP 385

Query: 263 NN 264
             
Sbjct: 386 ER 387


>gi|110834123|ref|YP_692982.1| GGDEF domain-containing protein [Alcanivorax borkumensis SK2]
 gi|110647234|emb|CAL16710.1| GGDEF domain protein [Alcanivorax borkumensis SK2]
          Length = 364

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 78/172 (45%), Gaps = 9/172 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           + L  ++NR+S ++  D L+GL N   F+  L          N  L +   D+D+FKQ+N
Sbjct: 191 RRLHEAHNRLSAIAVRDDLTGLYNRRHFLERLEEEMSRANRENNPLHLAIIDLDHFKQVN 250

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD V+   +    +       + R GGEEF      +S Q        LR   
Sbjct: 251 DTYGHHAGDDVLHRFAQLAAMGLRKSDLLARYGGEEFVVLFPHTSTQACQAAMERLRNRF 310

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +Q + S    +    SAG+      E     I RAD+ALY AK  GRNR+
Sbjct: 311 --AQQHYSFSGDLRSKFSAGLTPYQPGESAEEFIKRADRALYQAKDLGRNRI 360


>gi|24373054|ref|NP_717097.1| GGDEF family protein [Shewanella oneidensis MR-1]
 gi|24347227|gb|AAN54541.1|AE015592_14 GGDEF family protein [Shewanella oneidensis MR-1]
          Length = 596

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 11/175 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           +   R  +++++D L+G+LN  A        F+ +  +      ++ FD+D+FK+IND++
Sbjct: 405 LQKRRFMRMAKMDALTGVLNRGAGQDLGENMFVQA-AARGGDYCVILFDLDHFKRINDSY 463

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD  +  + + L           R+GGEEFA     ++E +   +A   R  IE  
Sbjct: 464 GHGTGDWALKKVVEVLKPHIRNGDVFARIGGEEFALFLPYANEAKGLDVAEQCRSRIEAI 523

Query: 207 QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
             ++ SG    IT S G++     +  +  +++RAD ALY AK +GRN V C+ D
Sbjct: 524 DTHL-SGHKFTITASFGVSGMTKDDLSLDPLLHRADMALYAAKSNGRNCVSCYQD 577


>gi|114049063|ref|YP_739613.1| diguanylate cyclase with GAF sensor [Shewanella sp. MR-7]
 gi|113890505|gb|ABI44556.1| diguanylate cyclase with GAF sensor [Shewanella sp. MR-7]
          Length = 345

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 19/180 (10%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFF---DIDYFKQINDN 145
           L +    +  L+  D L+G  N   F    + ++ +++EK  + +F   DID+FK +ND 
Sbjct: 170 LRLQLKELEYLASTDHLTGAGNRRVFTQKILQAIDTFHEKGQLFYFGLLDIDHFKMLNDQ 229

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVG-----RLGGEEFAAAALGSSEQEAAILANDLR 200
           FGH  GD V+     Q +V     M        R+GGEEFA      +E E     ND+R
Sbjct: 230 FGHTAGDYVL-----QKIVAISEAMMTSSAELFRIGGEEFAIIFPEQTEYEPMQFFNDIR 284

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           + I  + ++    P I +++S G       +    +++ R+D+ALY AK +GRNRVV F+
Sbjct: 285 EAIAKAALDFDGIP-ISVSVSIGFTTMSTADYAPESLLRRSDKALYQAKLAGRNRVVMFN 343


>gi|332991692|gb|AEF01747.1| diguanylate cyclase/phosphodiesterase [Alteromonas sp. SN2]
          Length = 668

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 13/171 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVG 151
           ++ +L+  D L+GL N    + SL      +  EK  ++++F D+D FKQ+ND++GH  G
Sbjct: 233 QMEKLANFDTLTGLPNRQYLMKSLSIELARAKREKSQVALMFLDLDGFKQVNDSYGHDAG 292

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG--SSEQEAAILANDLRKIIENSQIN 209
           DK++  +S ++         VGRLGG+EF    +G  ++ Q  AI    + KI +   I+
Sbjct: 293 DKLLCGISSEISDAMRDGDVVGRLGGDEFLIILVGNPTNSQLEAIAKRLISKITKLDHID 352

Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
              G  +  ++S GIA     +   ST++  AD A+Y AK  G+ R V F+
Sbjct: 353 ---GWRVDPSVSIGIALATDSDYAASTLVTNADVAMYKAKNEGKGRYVWFT 400


>gi|323699407|ref|ZP_08111319.1| diguanylate cyclase [Desulfovibrio sp. ND132]
 gi|323459339|gb|EGB15204.1| diguanylate cyclase [Desulfovibrio desulfuricans ND132]
          Length = 395

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 11/193 (5%)

Query: 74  ISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHS-------AFISSLG 123
           I IT    LG ++ +   + +EL      +S+L+ ID  + L N          F  S  
Sbjct: 201 IEITSDDELGELAENYNLMSRELARCRFELSELAVIDPQTNLYNRRHFDEQARQFFESAR 260

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            Y + +S++  D+D+F+ +NDNF   VGD V+  +++           V R GGEEF   
Sbjct: 261 RYEQPMSVMMGDLDHFRVLNDNFSREVGDMVLEKVAELFTRHTRKSDVVARYGGEEFVVL 320

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              ++   AAI   ++R+ +E    +    P + +TIS G+A+    +  ++++ RADQ 
Sbjct: 321 FTNTARDRAAIACENIRRAVEAYPWD-EFHPGLKVTISMGLADNVDLDSAASMVSRADQY 379

Query: 244 LYVAKKSGRNRVV 256
           L  AK  GRN+V 
Sbjct: 380 LSAAKAGGRNQVA 392


>gi|315269068|gb|ADT95921.1| diguanylate cyclase [Shewanella baltica OS678]
          Length = 640

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 78/134 (58%), Gaps = 12/134 (8%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++ FD D+FK+INDNFGH +GD+ +  ++     + G    +GR+GGEEF      +  
Sbjct: 496 SVIIFDADHFKKINDNFGHELGDRALLTIASASQALTGNKDLIGRIGGEEFLILLPNTDA 555

Query: 190 QEAAILANDLRKIIENSQINISSGPS-IHITISAGIA--------ERCHKEP-ISTIIYR 239
           + A  LA+ L+  I  S++     P+ + +T+SAG+A        E  +++   ++++ R
Sbjct: 556 ERACELAHQLQAHI--SRLGAEDLPAELKLTVSAGVATLAPQKKTENTYQDKDFASLLKR 613

Query: 240 ADQALYVAKKSGRN 253
           AD ALY AK +GRN
Sbjct: 614 ADDALYEAKNAGRN 627


>gi|237746066|ref|ZP_04576546.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacter formigenes HOxBLS]
 gi|229377417|gb|EEO27508.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacter formigenes HOxBLS]
          Length = 1049

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 62/172 (36%), Positives = 86/172 (50%), Gaps = 11/172 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D L+GL N +         IS     +E L+++F D+D FK +ND+ GH VG
Sbjct: 614 RVQWLAHFDPLTGLPNRTLLHIRSNLAISLAQRRHEPLALMFLDLDNFKNVNDSLGHGVG 673

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++   S +LV        + RLGG+EF     G+    AA LA  L  I    Q NI 
Sbjct: 674 DELLKQFSQRLVNAVREQDTISRLGGDEFVLVLPGTDTDGAAYLAERLLNIAAR-QYNIE 732

Query: 212 SGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
               I++T+S GIA          T+   AD A+Y AK+SGRN   CF   E
Sbjct: 733 RH-EINLTVSIGIAMYPTDGTDFDTLWRSADAAMYRAKQSGRND-YCFFTTE 782


>gi|228909876|ref|ZP_04073697.1| Sensory box/GGDEF family protein [Bacillus thuringiensis IBL 200]
 gi|228849711|gb|EEM94544.1| Sensory box/GGDEF family protein [Bacillus thuringiensis IBL 200]
          Length = 430

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ +D L+ + N   F   L          +EK++I+ FDID FK +ND +GH 
Sbjct: 261 YQEQERLAMVDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTVNDTYGHD 320

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 321 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 379

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +G S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 380 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 425


>gi|289811671|ref|ZP_06542300.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 163

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 3/137 (2%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            +  S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF     
Sbjct: 20  RQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEFCIVLP 79

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQA 243
           G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +   AD+ 
Sbjct: 80  GATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQSLADKR 139

Query: 244 LYVAKKSGRNRVVCFSD 260
           LY AK+SGRNR +C SD
Sbjct: 140 LYYAKQSGRNR-ICASD 155


>gi|255589233|ref|XP_002534887.1| conserved hypothetical protein [Ricinus communis]
 gi|223524420|gb|EEF27496.1| conserved hypothetical protein [Ricinus communis]
          Length = 297

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 77/162 (47%), Gaps = 19/162 (11%)

Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S  D LSGL N    +SSL         Y    S++ FDID+FK+IND  GH  GDK I 
Sbjct: 144 SETDSLSGLANRRKLMSSLTEHFELFARYTTPASVLIFDIDHFKRINDAHGHLAGDKAIV 203

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPS 215
             +D             RLGG+EF      +   +A  +A  LR +I E +         
Sbjct: 204 TTADICRRELRATDVPARLGGDEFVVLMPHTDSAQALPIAERLRLRIAEQAG-------- 255

Query: 216 IHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
              TIS G++E    +     ++ RAD ALY AK+ GR+R+V
Sbjct: 256 --ATISGGLSEMTRGDLSYEDVLKRADDALYRAKRDGRDRIV 295


>gi|168465468|ref|ZP_02699350.1| AdrA protein [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195631582|gb|EDX50102.1| AdrA protein [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 370

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
            LSL +I +   LL  ++S     +L     R+  +S  D ++G+ N   +   L +   
Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               ++ + +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EF
Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQLTLRGSDIIGRFGGDEF 292

Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237
           A    G+   ++AI A  + ++ E  + + +   P + + IS G+A      P++  I  
Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343

Query: 238 YR-----ADQALYVAKKSGRNRV 255
           YR     AD ALY AK +GRNR 
Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366


>gi|218780099|ref|YP_002431417.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01]
 gi|218761483|gb|ACL03949.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01]
          Length = 249

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 15/178 (8%)

Query: 97  YNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           ++R+  L+  D L+GL N        S  IS        L     D+D+FK +ND +GH 
Sbjct: 75  FHRMRMLAAYDELTGLYNRRVGKMRLSEEISRSERRGSPLCAAMLDLDHFKAVNDTYGHQ 134

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+  +             + R GGEE  A   G+  ++A  +   LR  + +  +N
Sbjct: 135 AGDRVLRHVCRIFRECLRAEDILIRYGGEEILAVMPGTELEDACDILERLRASVADEPLN 194

Query: 210 ISSGPSIHITISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              G  I +T+SAG A R H+         +++  AD+ LY+AK+ GRN+VVCF D+E
Sbjct: 195 -HKGRCIPVTVSAGAA-RLHEAGDGPNDAGSLVALADRRLYMAKQKGRNQVVCF-DLE 249


>gi|218530687|ref|YP_002421503.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
 gi|218522990|gb|ACK83575.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
          Length = 405

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 42/268 (15%)

Query: 9   LSIWLCHEKNLESFSPHT---------FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY 59
           L+IW   ++ L S  P           + I   + F++ I   + IA         +P++
Sbjct: 136 LTIWQGRDEPLVSRYPALVLLATYAGLYWIRLPLAFTMPIPASVAIA---------SPWF 186

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
            +         L       S+ + ++  ++ KE      R++  +  D L+G+ N  A +
Sbjct: 187 AI---------LCFAGTLFSVAIAFVFMALTKERAEREQRLA--AETDSLTGIANRRALV 235

Query: 120 SSLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIA---FLSDQLVVVFGTPMFV-G 173
           +    +          FD+D+FK +ND +GH VGD V+A    ++D L+     P  V G
Sbjct: 236 AGAERHLAVAPAALLLFDLDHFKAVNDRYGHSVGDAVLAAFCHVADPLL----PPGAVFG 291

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEP 232
           R+GGEEFA       E+ A  +A D+R  I  ++      P + I +S G+A        
Sbjct: 292 RMGGEEFACLLPRLDERAAMRVAEDVRAAI--ARFAHPDYPELAIRVSVGVAAESQIGGS 349

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  ++ RAD ALY AK +GR+RVV   +
Sbjct: 350 LDYLLRRADDALYQAKHAGRDRVVAAGE 377


>gi|157375214|ref|YP_001473814.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157317588|gb|ABV36686.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 343

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 78/161 (48%), Gaps = 10/161 (6%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+ L N  AF       +  L    E   ++  DID+FKQ NDN GH +GDKV+
Sbjct: 178 LALTDQLTSLHNRRAFEEEVLIHMQRLTKTQESSCLLVIDIDHFKQFNDNHGHVIGDKVL 237

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
            +++  L        FV R GGEEF      +   +A I+A  LR  I + ++ +     
Sbjct: 238 TYIALALNQAVKGSDFVARYGGEEFVVLLPDTELADALIVAEQLRSKIADRKLTVGKDKK 297

Query: 216 I---HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +    IT+S G A     +   +   RAD+ALY AK  GRN
Sbjct: 298 LSLGSITVSIGAATLNISDDRESYFVRADEALYRAKSCGRN 338


>gi|81300620|ref|YP_400828.1| diguanylate cyclase [Synechococcus elongatus PCC 7942]
 gi|81169501|gb|ABB57841.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Synechococcus
            elongatus PCC 7942]
          Length = 1037

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 11/169 (6%)

Query: 98   NRISQLSRIDCLSGLLNHSAFISSLGS---------YNEKLSIVFFDIDYFKQINDNFGH 148
             ++ Q +  D L+G+LN   FI+   +          +  LS+V  DID+FK IND++GH
Sbjct: 859  QKLQQQATTDALTGILNRRQFITLAQAELNRIYRIQRDTSLSLVIIDIDHFKTINDSYGH 918

Query: 149  PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             VGD+V+   ++             RLGG+EF      ++ ++A  + + +R+++    +
Sbjct: 919  TVGDQVLILWTNICQQNIREVDIFARLGGDEFVLMLPETNGKQAYQVMDRIRQLVIQQSL 978

Query: 209  NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            ++    +I ITIS GIA    +   +   + RAD+ALY AK+ GR+R++
Sbjct: 979  HLPQ-QAIAITISVGIAVWTPEILTLDQFLERADRALYQAKQQGRDRII 1026


>gi|120555025|ref|YP_959376.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120324874|gb|ABM19189.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 630

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           ++L I   ++ +LS  D L+GL N   F     S       + E LS++  DID+FK  N
Sbjct: 442 RDLEILNEQLLELSATDPLTGLKNRGHFDKKFQSDVVHAYRFEETLSLLIVDIDHFKGFN 501

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH VGD  +  ++D +      P     R GGEEF      + E  A  +A  +R+ 
Sbjct: 502 DTYGHLVGDDCLKMVADCIKQHVTRPQDLAARYGGEEFVVLLPDTPEAGACRVAELIRED 561

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257
           I+     +S    +H+T+S G+      +  +T  +   AD ALY AK  GRNRVV 
Sbjct: 562 IQKMAFRVSDQ-VLHLTVSIGVCSCAPSQADATKALFACADGALYRAKAEGRNRVVA 617


>gi|326797050|ref|YP_004314870.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326547814|gb|ADZ93034.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 300

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 110/246 (44%), Gaps = 22/246 (8%)

Query: 32  SIFFSIFI-ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
           SIFF  +I  TVI +       + L    G +   V N+ LV  SI  S+        + 
Sbjct: 55  SIFFESYIRPTVISLGECQEVQLSLIAKAGEKVPAVANIKLVGSSIYWSIYTAVARDKLY 114

Query: 91  KELFI-------SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDI 136
           +EL +          ++++L+RID L+ L N  A    L    E+L       S +  DI
Sbjct: 115 QELLLVRDQLEEETQKLTKLTRIDPLTRLRNRRAAFDDLNDLIERLKRQFVPASFIMIDI 174

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK++ND FGH  GD V+  ++  L           R GGEEF      SS +E     
Sbjct: 175 DWFKKLNDKFGHQYGDDVLVKVAAILQSSTKVRDISARWGGEEFLVVLYDSSIEETRAFC 234

Query: 197 NDLRKIIENSQIN--ISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGR 252
             L   IE S +N  I    S+ + +SA  ++   C  E I   +  AD ALY AK +GR
Sbjct: 235 KRLH--IEMSLLNASIEGEVSVSVGVSALKSDNLVCI-ELIENCLKEADVALYEAKSNGR 291

Query: 253 NRVVCF 258
           NR   F
Sbjct: 292 NRTEYF 297


>gi|153000568|ref|YP_001366249.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|151365186|gb|ABS08186.1| diguanylate cyclase [Shewanella baltica OS185]
          Length = 325

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 79/162 (48%), Gaps = 10/162 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG----SYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
            L+  D L+G LN     + L      Y ++    S++  DID+FK +NDNFGH +GD++
Sbjct: 164 HLANTDELTGALNRKQLKTKLELSVYEYQQQQIPASLLLIDIDFFKMVNDNFGHIMGDQL 223

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   S  +         + R GGEEF      +  + AAI+A DLR+ IE          
Sbjct: 224 LNKFSQHIQKKIRKDDLLFRFGGEEFLILLPNTQFESAAIVAEDLRRSIEEQHF---LDQ 280

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              +T S G+A+    + + T +   D  LY AK +GRN VV
Sbjct: 281 HTQVTCSIGVADLRQADTLDTWLKTCDNLLYNAKNAGRNCVV 322


>gi|160897594|ref|YP_001563176.1| diguanylate cyclase [Delftia acidovorans SPH-1]
 gi|160363178|gb|ABX34791.1| diguanylate cyclase [Delftia acidovorans SPH-1]
          Length = 583

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 18/163 (11%)

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GLLN   F       ++        LS++  D+D+FK+IND  GH +GD V+ 
Sbjct: 424 ARSDPLTGLLNRRGFDFQLDFAMALARRSGRPLSVLVIDVDHFKRINDQHGHDMGDAVLR 483

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            L+    +       + R+GGEEF A    ++   A ++A  LR+++  +       P  
Sbjct: 484 TLARAFRMRLRESDVLARMGGEEFLALLPDTTADAAVVIAEQLRELLATT-------PMA 536

Query: 217 H---ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           H   +T S G+A  R   +  + ++ R D+ALY AK +GRN V
Sbjct: 537 HGEPVTASVGVATLRGTTDTATAMLRRGDEALYEAKGAGRNNV 579


>gi|94501436|ref|ZP_01307955.1| sensory transduction protein kinase [Oceanobacter sp. RED65]
 gi|94426401|gb|EAT11390.1| sensory transduction protein kinase [Oceanobacter sp. RED65]
          Length = 371

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 15/163 (9%)

Query: 106 IDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           +D L+G+    A    L +  +   +   D+D+FK+ ND  GH VGD V+  ++  +   
Sbjct: 207 VDELTGIAGRRALEFKLKTLPKHYYLAMLDVDHFKKFNDTHGHQVGDDVLRTVAKLISQT 266

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII-------------ENSQINISS 212
                +  R GGEEFA      +  E      + RK I             +NS+   S 
Sbjct: 267 RQAKAY--RYGGEEFALVFKNGAVSEIVACLEETRKAIAEYPLYPKSRKRDKNSRGKGSQ 324

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              +HIT+S G+A++   E    +I RAD+ALY AKK GRNR+
Sbjct: 325 RKPLHITVSFGLAQQHKGESHPQVIERADKALYQAKKKGRNRI 367


>gi|198242044|ref|YP_002214338.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197936560|gb|ACH73893.1| AdrA protein [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
          Length = 370

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
            LSL +I +   LL  ++S     +L     R+  +S  D ++G+ N   +   L +   
Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               ++ + +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EF
Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQLTLRGSDIIGRFGGDEF 292

Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237
           A    G+   ++AI A  + ++ E  + + +   P + + IS G+A      P++  I  
Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343

Query: 238 YR-----ADQALYVAKKSGRNRV 255
           YR     AD ALY AK +GRNR 
Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366


>gi|78778209|ref|YP_394524.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78498749|gb|ABB45289.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM
           1251]
          Length = 249

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 9/160 (5%)

Query: 107 DCLSGLLNH---SAFISS---LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N    + F+     L   N   +++F DID FK+IND  GH  GD ++  L+ 
Sbjct: 87  DGLTGLYNRHYLNDFLEKFNILQKENSMFAVIFIDIDKFKEINDTIGHLAGDCILKSLAL 146

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
           +L  +      + R GGEEF       SE+     A  +R+ I+NS   I     ++ITI
Sbjct: 147 RLKYLTQDADILCRYGGEEFVIICSDISEENIVQKAQKIREEIQNS---IFECEHVNITI 203

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           S G++       I++++  AD+ALY+AKKSGRN V  F +
Sbjct: 204 SIGLSFGKKGCDINSVLNEADEALYMAKKSGRNCVSVFDN 243


>gi|119775539|ref|YP_928279.1| sensory box protein [Shewanella amazonensis SB2B]
 gi|119768039|gb|ABM00610.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella amazonensis SB2B]
          Length = 751

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 95/181 (52%), Gaps = 12/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           S+LK+   +   ++QL+  D L+ L N S         I    +   +L+++  D+D FK
Sbjct: 313 SLLKQ---TEAEVAQLAWHDPLTRLPNRSKLTTISQQQIKLAANRKTRLALLLIDVDLFK 369

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND+FGH  GDKV+  LS++L  + G    + R+GG+EF          +  ++ + ++
Sbjct: 370 HINDSFGHLAGDKVLLSLSERLAALLGAEDTLARIGGDEFVLLTQVRRRDDIPVILSAIQ 429

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  + S  + S G S+ ++ S GIA      +   T++  AD A+Y AK+ GRNR   ++
Sbjct: 430 RAFDTS-FDTSEGESVRLSASIGIAVYPDDGDNPDTLLKNADAAMYRAKQQGRNRHAFYT 488

Query: 260 D 260
           +
Sbjct: 489 E 489


>gi|329897318|ref|ZP_08272036.1| GGDEF family protein [gamma proteobacterium IMCC3088]
 gi|328921249|gb|EGG28648.1| GGDEF family protein [gamma proteobacterium IMCC3088]
          Length = 472

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 5/159 (3%)

Query: 103 LSRIDCLSGLLNHS-AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+++D   GL + + + +S     N+ + +   DID+FK +ND  GH VGD+V+A  +++
Sbjct: 311 LTQLDNRRGLEDKARSLLSRPVDVNKPVVVALLDIDHFKLLNDQHGHQVGDQVLAEFAER 370

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS----IH 217
           L     +   VGR GGEEF     G   Q A     +L  +I +         +    + 
Sbjct: 371 LRAFCRSHDLVGRWGGEEFMLILEGLDRQAARARVQELHTMIGSRPFYCEGEAAQTFYVD 430

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +T + G+A     +   ++I RAD+ALY  K+ GRN+VV
Sbjct: 431 VTATVGVAYYRSDDTFDSVISRADRALYRGKEQGRNQVV 469


>gi|327188359|gb|EGE55576.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 783

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 14/179 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  S +R  + +  D L+GLLN   F       I++  +  ++L+ +F D+D FK IND
Sbjct: 336 ELKASEDRNHRQAITDHLTGLLNRQGFEAVLDSKIAAADAAGQELACLFVDLDRFKWIND 395

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKII 203
           N GH  GDK +  L ++L           RLGG+EFA       +E+ A  +   +  I 
Sbjct: 396 NMGHAAGDKALIELVERLKTHLAPSDEAARLGGDEFAILLPAKDAERRAKAMCEQIASIF 455

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDI 261
           E         P +H++ S GIA   H    +  ++ ++D A+Y  K+ G+N    F ++
Sbjct: 456 ET-----PFAPDMHLSASIGIAIYPHHAATAAELLQKSDMAMYAKKRDGKNGAQLFDNV 509


>gi|312915648|dbj|BAJ39622.1| hypothetical protein STMDT12_C46790 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
          Length = 354

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 118/250 (47%), Gaps = 20/250 (8%)

Query: 32  SIFFSIFIATVIFIANIFLFYI-GLTPF----------YGLEYILVENLSLVIISITISL 80
           S+   +FI ++ F ANI  F +  L P            GL  + +  L +V I+I   +
Sbjct: 104 SLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWLNGNEQGLRILYLLTLPMVGIAIQHVI 163

Query: 81  LLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFF 134
              Y   +  ++ +L      ++ LS +D L+GL N     + L +     S    ++  
Sbjct: 164 QKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGLYNRRGLQNRLDTLQAPGSHEHYVLLL 223

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK  ND++GH +GD+ +  +S  +     +   V R GGEEF      +  Q+A  
Sbjct: 224 DIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTTAEPQQARA 283

Query: 195 LANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            A  +R+ + + +I      S+  ++T+S GIA    +  I   I +AD+ALY AK  GR
Sbjct: 284 TAERIRQEVYDLKIPHMFNESVATNVTVSIGIAPLTDRN-IGDAIEKADKALYEAKHLGR 342

Query: 253 NRVVCFSDIE 262
           N ++   D+ 
Sbjct: 343 NHILVSDDMR 352


>gi|217418926|ref|ZP_03450433.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 576]
 gi|217398230|gb|EEC38245.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 576]
          Length = 688

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 4/127 (3%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186
           KL+I+F D+D FK IND+ GHP GD+V+   S +L+        V RLGG+EF       
Sbjct: 288 KLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESV 347

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245
           SS+ EAA +A D+ + +   + N   G ++ +T S GIA      +   T++  AD A+Y
Sbjct: 348 SSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGDTADTLLRHADAAMY 405

Query: 246 VAKKSGR 252
            AK+SGR
Sbjct: 406 AAKRSGR 412


>gi|167827626|ref|ZP_02459097.1| hypothetical protein Bpseu9_28352 [Burkholderia pseudomallei 9]
 gi|226195020|ref|ZP_03790611.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei Pakistan 9]
 gi|225932825|gb|EEH28821.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei Pakistan 9]
          Length = 688

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 4/127 (3%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186
           KL+I+F D+D FK IND+ GHP GD+V+   S +L+        V RLGG+EF       
Sbjct: 288 KLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESV 347

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245
           SS+ EAA +A D+ + +   + N   G ++ +T S GIA      +   T++  AD A+Y
Sbjct: 348 SSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGDTADTLLRHADAAMY 405

Query: 246 VAKKSGR 252
            AK+SGR
Sbjct: 406 AAKRSGR 412


>gi|16767795|ref|NP_463410.1| hypothetical protein STM4551 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16423119|gb|AAL23369.1| putative diguanylate cyclase/phosphodiesterase domain 1 containing
           protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
          Length = 354

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 118/250 (47%), Gaps = 20/250 (8%)

Query: 32  SIFFSIFIATVIFIANIFLFYI-GLTPF----------YGLEYILVENLSLVIISITISL 80
           S+   +FI ++ F ANI  F +  L P            GL  + +  L +V I+I   +
Sbjct: 104 SLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWLNGNEQGLRILYLLTLPMVGIAIQHVI 163

Query: 81  LLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFF 134
              Y   +  ++ +L      ++ LS +D L+GL N     + L +     S    ++  
Sbjct: 164 QKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGLYNRRGLQNRLDTLQAPGSHEHYVLLL 223

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK  ND++GH +GD+ +  +S  +     +   V R GGEEF      +  Q+A  
Sbjct: 224 DIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTTAEPQQARA 283

Query: 195 LANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            A  +R+ + + +I      S+  ++T+S GIA    +  I   I +AD+ALY AK  GR
Sbjct: 284 TAERIRQEVYDLKIPHMFNESVATNVTVSIGIAPLTDRN-IGDAIEKADKALYEAKHLGR 342

Query: 253 NRVVCFSDIE 262
           N ++   D+ 
Sbjct: 343 NHILVSDDMR 352


>gi|163941785|ref|YP_001646669.1| diguanylate cyclase [Bacillus weihenstephanensis KBAB4]
 gi|229134854|ref|ZP_04263661.1| Sensory box/GGDEF family protein [Bacillus cereus BDRD-ST196]
 gi|163863982|gb|ABY45041.1| diguanylate cyclase [Bacillus weihenstephanensis KBAB4]
 gi|228648529|gb|EEL04557.1| Sensory box/GGDEF family protein [Bacillus cereus BDRD-ST196]
          Length = 430

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 99/217 (45%), Gaps = 29/217 (13%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           F F +  TP       L E+LS  I+  T            + EL   Y    +L+ ID 
Sbjct: 231 FTFLLRATP-------LPEDLSRFIVKCTE-----------ITELDEIYQEQERLAMIDS 272

Query: 109 LSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ + N   F   L +        +EK++++ FDID FK +ND +GH  GD  +  L+D 
Sbjct: 273 LTEIYNRLKFQQILETEWENVLRNDEKVALILFDIDNFKSVNDTYGHDFGDLALVQLADL 332

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +           R GGEEF      + E+EA  +A  LR  IE       SG S  +T S
Sbjct: 333 MKSKVEDQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKHF---SGIS-KLTAS 388

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 389 FGVALYEQGITREELMQRADIALYEAKKNGKNQVCIY 425


>gi|126174323|ref|YP_001050472.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|125997528|gb|ABN61603.1| diguanylate cyclase [Shewanella baltica OS155]
          Length = 342

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 10/177 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
           G  ++ L      +S  +  D L+ L N  A+  S+         +  + S++  DID F
Sbjct: 162 GQEVQNLKSEMENLSLAAMTDQLTSLHNRRAYELSIQDQIYLSQDHQTRCSLLLIDIDNF 221

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND +GH  GDKV+A+++  L        FV R GGEEF      +   +A  +A +L
Sbjct: 222 KAFNDTYGHLTGDKVLAYVALALKQCVRGDDFVARYGGEEFVVVLPNTHFHDALQVAENL 281

Query: 200 RKIIENSQINISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           R+ I   ++ I     +    IT+S G+A     +   T+  RAD+ALY AK  GRN
Sbjct: 282 RERISERRLTIGKDKKLSLGAITVSIGLASLQQGDDAETLFGRADKALYQAKAEGRN 338


>gi|107024091|ref|YP_622418.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
 gi|116691177|ref|YP_836800.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
 gi|105894280|gb|ABF77445.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
 gi|116649266|gb|ABK09907.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
          Length = 452

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 14/178 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142
           ++LF ++  + + S  D L+G  N        H+ F+ +     E LS++  D+D FK  
Sbjct: 275 QQLFEAHATLIRSSARDGLTGAFNRSHFNDHFHTLFLQAR-RQGEPLSLLMVDVDRFKAY 333

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD  +  +++ L      P   V R GGEEFA     +  + A ++A+++R 
Sbjct: 334 NDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEFAIVLPNTGARGARVVADEVRD 393

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256
            +    + +   P+  +++S G A     + +ST   +I  AD ALY AK +GRNRVV
Sbjct: 394 AVLRLDLAMPDSPAGRVSVSVGCAT-VSADDLSTPDALIEAADAALYRAKDAGRNRVV 450


>gi|309388336|gb|ADO76216.1| response regulator receiver modulated diguanylate cyclase
           [Halanaerobium praevalens DSM 2228]
          Length = 333

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 93/176 (52%), Gaps = 14/176 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +++ +D L+G+ N   F  +L            +L+++  DID+FKQ ND +GH  
Sbjct: 156 KKLEKMALVDGLTGISNRRLFDKTLKKELKRARRKETELALIMLDIDHFKQYNDTYGHQE 215

Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD+ +  ++  L         F  R GGEEFA     +++  A  +A D+RK I   ++ 
Sbjct: 216 GDECLKEIASVLEANSKRASDFAARYGGEEFAVILPDTAKGGALKIAEDIRKDIMALKLE 275

Query: 210 ISSGP-SIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             + P + ++T+S G++         ++ I + I +ADQALY AK++GRN+ V + 
Sbjct: 276 HKNSPIAEYVTVSLGVSSLQVKTEVSQKLIKSFIDKADQALYQAKETGRNKTVYYD 331


>gi|302669367|ref|YP_003832517.1| GGDEF domain-containing protein [Butyrivibrio proteoclasticus B316]
 gi|302397031|gb|ADL35935.1| GGDEF domain-containing protein [Butyrivibrio proteoclasticus B316]
          Length = 547

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 88/179 (49%), Gaps = 8/179 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQINDN 145
           I+  L+ S  R S+++R D L+ L N    +  L  +    +    +  D+D+FK IND 
Sbjct: 369 IIAHLYYSNKRRSRVARTDFLTQLPNRLKVMELLSQFEANKTPYGFIMLDVDHFKDINDT 428

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH VGD+VI  ++ +L  + G      RLGG+EF A     + Q A  L   +  +++ 
Sbjct: 429 YGHKVGDEVIRMVAGRLQSLTGDGTIFARLGGDEFCAIFQEPTSQSAVRLCESIIDVMKP 488

Query: 206 SQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
                +S   + IT+S G A       EP   + Y AD+ALYV K  GRN    F  I+
Sbjct: 489 EF--ATSACILQITVSVGCALYPEDVSEPDKLMEY-ADKALYVTKDRGRNGYTLFGSID 544


>gi|194446449|ref|YP_002039624.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194405112|gb|ACF65334.1| AdrA protein [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 370

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
            LSL +I +   LL  ++S     +L     R+  +S  D ++G+ N   +   L +   
Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               ++ + +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EF
Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQLTLRGSDIIGRFGGDEF 292

Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237
           A    G+   ++AI A  + ++ E  + + +   P + + IS G+A      P++  I  
Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343

Query: 238 YR-----ADQALYVAKKSGRNRV 255
           YR     AD ALY AK +GRNR 
Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366


>gi|218899205|ref|YP_002447616.1| putative sensory box/GGDEF family protein [Bacillus cereus G9842]
 gi|218545137|gb|ACK97531.1| putative sensory box/GGDEF family protein [Bacillus cereus G9842]
          Length = 430

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ +D L+ + N   F   L          +EK++I+ FDID FK +ND +GH 
Sbjct: 261 YQEQERLAMVDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTVNDTYGHD 320

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 321 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 379

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +G S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 380 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 425


>gi|90422977|ref|YP_531347.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
 gi|90104991|gb|ABD87028.1| diguanylate cyclase (GGDEF domain) [Rhodopseudomonas palustris
           BisB18]
          Length = 307

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 78/165 (47%), Gaps = 10/165 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  L+  D L+GL NH  F       I       E LS +  D+D+FK IND++GH  GD
Sbjct: 145 IVALTLTDSLTGLGNHRRFEQELSTEIKRFARTAEPLSALMVDLDHFKAINDSYGHDAGD 204

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KV+A  +  L           R+GGEEF      +  Q+A + A  +R  +    I  +S
Sbjct: 205 KVLAAFAALLRAQIRATEIAARIGGEEFVVLMPHTGLQQAMLTAERIRTALAAVPIPPAS 264

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            P   +T S G+A     E     + R D ALY AK SGRN VV 
Sbjct: 265 QP---VTASFGVATLATAESRDAFMRRVDCALYAAKHSGRNCVVA 306


>gi|323484784|ref|ZP_08090141.1| hypothetical protein HMPREF9474_01892 [Clostridium symbiosum
           WAL-14163]
 gi|323401890|gb|EGA94231.1| hypothetical protein HMPREF9474_01892 [Clostridium symbiosum
           WAL-14163]
          Length = 611

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/179 (36%), Positives = 99/179 (55%), Gaps = 16/179 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQ 141
           ISG   KE+    N +S LS  D L+GL+N  AF+  + +  E+ +  FF   D+D FK 
Sbjct: 434 ISGRKAKEM----NLLS-LSCTDALTGLMNREAFVGRVDTLIEEKNKGFFFMIDVDNFKM 488

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD  +A + + L   F     V R+GG+EFAA    +S+ E A    +L  
Sbjct: 489 VNDTKGHEAGDGCLARIGELLRQSFRDYDPVARIGGDEFAAFMSDTSDIENAQKKAEL-- 546

Query: 202 IIENSQINISSGP-SIHITISAGIAERCHKEPIS-TIIYR-ADQALYVAKKSGRNRVVC 257
           I+  S++  S G   + +++S GIA  C  +  S   +YR AD A+Y+AK+ G+NR +C
Sbjct: 547 IL--SKLKHSQGEGEMEMSVSIGIAA-CPDDGQSYQELYRNADHAMYLAKREGKNRFIC 602


>gi|254524374|ref|ZP_05136429.1| two-component system response regulator [Stenotrophomonas sp.
           SKA14]
 gi|219721965|gb|EED40490.1| two-component system response regulator [Stenotrophomonas sp.
           SKA14]
          Length = 452

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 9/168 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+GL N   F+         L  + + +++   DID+FK IND +GH  GD
Sbjct: 273 LQDLATRDFLTGLPNRRCFLEQSQRQLPQLQLHGQCVAVAMIDIDHFKHINDTYGHEAGD 332

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +  ++  +     +   + R GGEEF        + EA +   +LR+ I   +++I S
Sbjct: 333 DALRAVAGAVAAHARSQDLIARFGGEEFCLLVPDMEQDEALLYFEELRQRIAALEVDIGS 392

Query: 213 GPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++ +T+S G+   R  ++ +  +I  AD+ LY+AK  GRNRV C +
Sbjct: 393 A-TLRMTVSIGLCCLRPQRDALHRLISEADRQLYLAKAGGRNRVSCTT 439


>gi|95928328|ref|ZP_01311076.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95135599|gb|EAT17250.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 481

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 8/163 (4%)

Query: 99  RISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +++  D L+ + N  A              +    S++ FD+D FKQIND  GH  G
Sbjct: 313 RLEEMALTDKLTRIANRQAIDLHLQQLFKEQQRHQVPFSVILFDLDNFKQINDTHGHIAG 372

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  +++ +         VGR GGEEF          +A   A  +R  I++  I   
Sbjct: 373 DAVLQNIANIVTTELRDCDVVGRWGGEEFLVLLKHCQLDDALKRAESIRLAIQSYAIGFE 432

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
              +++ T S G+ E   ++  +T++ RADQALY+AK++G+NR
Sbjct: 433 E-QTLYTTASFGVVEYRDQDDHNTLLKRADQALYIAKQNGKNR 474


>gi|92118971|ref|YP_578700.1| diguanylate cyclase/phosphodiesterase [Nitrobacter hamburgensis
           X14]
 gi|91801865|gb|ABE64240.1| diguanylate cyclase/phosphodiesterase [Nitrobacter hamburgensis
           X14]
          Length = 781

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 13/169 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAF------ISSLGSYNEKLS-IVFFDIDYFKQINDNFGHPVG 151
           +IS L+R D L+ L N  +F      + ++ +   +LS ++F D+D FKQIND  GHP G
Sbjct: 337 KISHLARFDSLTELPNRLSFRDEIERLLAIANSESRLSALLFIDLDQFKQINDTLGHPCG 396

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQIN 209
           D+++  ++D+L  +     FV R GG+EF      + S+E+ AA+    + ++ E  +I+
Sbjct: 397 DRLLCIVADRLRGMLRPDDFVARFGGDEFVVFQQNIQSAEEAAALSRRVVERLTERYEID 456

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 + I  S GIA          ++ +AD ALY AK  GR    CF
Sbjct: 457 RH---LVEIGASIGIALTSPGVTADNLLKQADMALYRAKAGGRG-TFCF 501


>gi|324016617|gb|EGB85836.1| diguanylate cyclase domain protein [Escherichia coli MS 117-3]
          Length = 362

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 102/197 (51%), Gaps = 25/197 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345

Query: 239 R-----ADQALYVAKKS 250
           R     AD ALY AKK+
Sbjct: 346 REWLKSADLALYKAKKA 362


>gi|320108085|ref|YP_004183675.1| PAS/PAC sensor-containing diguanylate cyclase [Terriglobus
           saanensis SP1PR4]
 gi|319926606|gb|ADV83681.1| diguanylate cyclase with PAS/PAC sensor [Terriglobus saanensis
           SP1PR4]
          Length = 310

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 88/187 (47%), Gaps = 16/187 (8%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           S   + E  +   ++S L+  D L+G+ N  AF  +L            ++S++  DID 
Sbjct: 116 SARDISERKLLEEKLSALALTDGLTGIANRRAFDEALEREWKRTLREGSQMSLLLLDIDR 175

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ ND +GH VGD  +  ++  +V V  +   V R GGEE A          A  +A  
Sbjct: 176 FKQFNDQYGHQVGDDCLRTVASLIVGVVRSTDIVARYGGEEIAIILPAPDRSGAMEIAEK 235

Query: 199 LRKIIENSQINISSGPSIH--ITISAGIAERCHKE------PISTIIYRADQALYVAKKS 250
           +R  +E+ QI     P     +T+S GIA    ++      P S ++  AD ALY AK  
Sbjct: 236 VRAAVESLQITHEGNPEGGNLVTVSIGIATALARQGGTIRMPESLLLA-ADNALYKAKHE 294

Query: 251 GRNRVVC 257
           GRNRV  
Sbjct: 295 GRNRVAT 301


>gi|307717735|ref|YP_003873267.1| hypothetical protein STHERM_c00180 [Spirochaeta thermophila DSM
           6192]
 gi|306531460|gb|ADN00994.1| hypothetical protein STHERM_c00180 [Spirochaeta thermophila DSM
           6192]
 gi|315187351|gb|EFU21107.1| diguanylate cyclase [Spirochaeta thermophila DSM 6578]
          Length = 346

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/133 (42%), Positives = 81/133 (60%), Gaps = 11/133 (8%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM--FVGRLGGEEFAAAALG 186
           LS++  D+D+FK++ND +GH  GDKV+  ++   V+ F T       R GGEEF A  L 
Sbjct: 217 LSLIMADLDHFKRLNDTYGHLAGDKVLQEIAR--VIHFHTRKNDIAARYGGEEF-AVLLP 273

Query: 187 SSEQEAAI-LANDLRKIIENSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQ 242
            +  EAA+ +A+ +R  +E+ +I    G  +HITIS G+A+   R    P    I RAD+
Sbjct: 274 HTPLEAAVGIADRIRIAVEHLEIPY-GGAVMHITISLGVAQYDPRRDATP-EDFIERADK 331

Query: 243 ALYVAKKSGRNRV 255
           ALY+AK+ GRNRV
Sbjct: 332 ALYMAKEKGRNRV 344


>gi|228980720|ref|ZP_04141025.1| Sensory box/GGDEF family protein [Bacillus thuringiensis Bt407]
 gi|228778889|gb|EEM27151.1| Sensory box/GGDEF family protein [Bacillus thuringiensis Bt407]
 gi|326941817|gb|AEA17713.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 386

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ +D L+ + N   F   L          +EK++I+ FDID FK +ND +GH 
Sbjct: 217 YQEQERLAMVDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTVNDTYGHD 276

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 277 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 335

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +G S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 336 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 381


>gi|213966927|ref|ZP_03395077.1| diguanylate cyclase/phosphodiesterase [Pseudomonas syringae pv.
           tomato T1]
 gi|301385112|ref|ZP_07233530.1| GGDEF [Pseudomonas syringae pv. tomato Max13]
 gi|213928249|gb|EEB61794.1| diguanylate cyclase/phosphodiesterase [Pseudomonas syringae pv.
           tomato T1]
          Length = 533

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 120/258 (46%), Gaps = 35/258 (13%)

Query: 23  SPHT-----FMIYFSIFFSIFIATVIF---IANIFLFYIGLTPFYGLEYILVENLSLVII 74
           SP T     + + +   FSIF+  V++   + ++ ++ + L   Y  ++   E    V+ 
Sbjct: 6   SPRTVRKYLYTVLWFYLFSIFLLAVVWEFKLESLAMYAMDLP--YDPDFEDAERWRFVLT 63

Query: 75  SITISLLLGYISGSILKELFI----SYNRI-------SQLSRIDCLSGLLN----HSAFI 119
           S   +LL   +   +LK L      SYN +         L+R D LSGLLN    H   +
Sbjct: 64  STAFALLSMVVPFILLKRLMQRLQSSYNDLLVAQALSDSLARHDPLSGLLNRRVFHEQLV 123

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGE 178
           + L   + + ++   D+D FK IND  GH VGD  I  +++ L     G    V RLGG+
Sbjct: 124 ARLQQESTRTAVFLIDLDKFKLINDTHGHAVGDAAICAVAESLRDATAGWQASVARLGGD 183

Query: 179 EFAAAALGSSEQ-EAAILANDLRKIIENSQINISSG--PSIHITISAGIA-ERCHKEPIS 234
           EF  A  G   Q E A LA ++      ++I +SS   P + ++ + G+A          
Sbjct: 184 EFGLAVSGDFNQFELATLAENVL-----AKIALSSAVLPRVILSATLGVAISPLDGSDAE 238

Query: 235 TIIYRADQALYVAKKSGR 252
            ++ RAD A+Y  K SGR
Sbjct: 239 VLLQRADSAMYRGKHSGR 256


>gi|121535227|ref|ZP_01667042.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Thermosinus carboxydivorans Nor1]
 gi|121306218|gb|EAX47145.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Thermosinus carboxydivorans Nor1]
          Length = 553

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 86/169 (50%), Gaps = 14/169 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGD 152
           + QLS  D L+ + N   F+  L    E       K S+V  DID FK IND FGH  GD
Sbjct: 388 LRQLSVTDSLTNVYNRRYFVQKLEEEIERAKRAGSKFSLVMLDIDRFKSINDRFGHNAGD 447

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  +++ +         + R GGEEF      ++  +A +L  +LR+ +  SQ++I  
Sbjct: 448 LVLKSMAEMIKNRIRKIDTLARWGGEEFVMLLPETTVNKAVVLVEELRESL--SQMDI-- 503

Query: 213 GPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            P +  +T S G+   C  + I T++ R D  +Y AK +GRN  V +SD
Sbjct: 504 -PGVGRVTASFGVVGYCPGDTIDTLMQRVDALMYEAKAAGRN-CVRYSD 550


>gi|15604107|ref|NP_220622.1| response regulator PleD [Rickettsia prowazekii str. Madrid E]
 gi|3860799|emb|CAA14699.1| unknown [Rickettsia prowazekii]
 gi|292571833|gb|ADE29748.1| Regulatory components of sensory transduction system [Rickettsia
           prowazekii Rp22]
          Length = 450

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 77/162 (47%), Gaps = 8/162 (4%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N   F       I      N KL ++  DID FK +ND +GH  GDKV+
Sbjct: 287 LAAKDGLTGLFNRRYFDIHLKQMIEKANKENIKLYLLMCDIDNFKHVNDTYGHQAGDKVL 346

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-P 214
             +S  L         + R GGEEF          +A   A  +R  IE     I     
Sbjct: 347 TTVSRILKNTLRVTDLIARFGGEEFTILLTDIDISKAIETAERVRVKIEYMDFYIEGQIE 406

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  TIS G+ E   +E I + I RAD+A+Y AK +G+N+VV
Sbjct: 407 PLKKTISIGVTEYKKEESIESFIKRADKAMYEAKTTGKNKVV 448


>gi|148256883|ref|YP_001241468.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Bradyrhizobium sp. BTAi1]
 gi|146409056|gb|ABQ37562.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Bradyrhizobium sp. BTAi1]
          Length = 833

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 96/179 (53%), Gaps = 11/179 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE----KLSIVFFDIDYFKQINDNF 146
           ++L ++  R+ +L++ D L+GL N + F+  +   N+    + ++   D+D FK +ND+ 
Sbjct: 360 RQLALANRRVLELAQTDALTGLANRAFFLEEMERINDEKGGRFTVFLLDLDRFKNVNDSL 419

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LANDLRKII- 203
           GH  GD+++  ++ +L         + RLGG+EFA    G S+Q A+   LA  + ++I 
Sbjct: 420 GHGAGDELLVQVAQRLRSQLREEDVLARLGGDEFALIQAGFSDQRASATELAQRITRLIA 479

Query: 204 ENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E  QI   SG  + I  S GI+    H      ++ +AD ALY +K +GR+    + D+
Sbjct: 480 EPFQI---SGQRVEIGTSIGISLAPQHGRDQEHLLKKADLALYRSKSAGRSCYTMYDDV 535


>gi|229013254|ref|ZP_04170395.1| Sensory box/GGDEF family protein [Bacillus mycoides DSM 2048]
 gi|228748021|gb|EEL97885.1| Sensory box/GGDEF family protein [Bacillus mycoides DSM 2048]
          Length = 430

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 99/217 (45%), Gaps = 29/217 (13%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           F F +  TP       L E+LS  I+  T            + EL   Y    +L+ ID 
Sbjct: 231 FTFLLRATP-------LPEDLSRFIVKCTE-----------ITELDEIYQEQERLAMIDS 272

Query: 109 LSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ + N   F   L +        +EK++++ FDID FK +ND +GH  GD  +  L+D 
Sbjct: 273 LTEIYNRLKFQQILETEWENVLRNDEKVALILFDIDNFKSVNDTYGHDFGDLALVQLADL 332

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +           R GGEEF      + E+EA  +A  LR  IE       SG S  +T S
Sbjct: 333 MKSKVEDQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKHF---SGIS-KLTAS 388

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 389 FGVALYEQGITREELMQRADIALYEAKKNGKNQVCIY 425


>gi|256377498|ref|YP_003101158.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Actinosynnema mirum DSM 43827]
 gi|255921801|gb|ACU37312.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Actinosynnema mirum DSM 43827]
          Length = 673

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 7/167 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++ +  L+  D L+GL N  A    L    +     S++  D+D FK +ND  GH VGD+
Sbjct: 233 HDELLALAEQDPLTGLANRRAVTRELERRLATGGTGSLLLLDLDNFKDVNDLRGHAVGDR 292

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  L+  L         +GRLGG+EFA     +   +AA +A  LR  I  +++ +++ 
Sbjct: 293 LMRALAAALRTRLEPEHLIGRLGGDEFAVVLPDTGPADAARVAEHLRDTI--ARLPLAT- 349

Query: 214 PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           P+   TIS G+A      +    ++  AD ALY +K +GRNRV  + 
Sbjct: 350 PATRTTISTGVAGYGTSGDTWELVLANADLALYASKAAGRNRVTVYE 396


>gi|153802148|ref|ZP_01956734.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|153824919|ref|ZP_01977586.1| GGDEF family protein [Vibrio cholerae MZO-2]
 gi|254225499|ref|ZP_04919109.1| GGDEF family protein [Vibrio cholerae V51]
 gi|124122341|gb|EAY41084.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|125621969|gb|EAZ50293.1| GGDEF family protein [Vibrio cholerae V51]
 gi|149741431|gb|EDM55461.1| GGDEF family protein [Vibrio cholerae MZO-2]
          Length = 489

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 12/188 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSI 131
           + ++L+  +++G +L  L   ++R   +QL+  D ++GLLN     S L    +++ L+I
Sbjct: 306 LVVALVYLFLTG-VLIYLNTRWDRQHYAQLAARDPMTGLLNRRGMESFLKGKRHSQYLAI 364

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQ 190
              DID FKQIND +GH +GD+VI ++ +Q+     +   V R GGEEF         EQ
Sbjct: 365 AVLDIDDFKQINDAYGHDMGDRVICYIGEQIENHIRSSDAVARFGGEEFVVYVTAKEKEQ 424

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAK 248
              I+      +   S + +  G     T+S GI   E         +   AD+ LYVAK
Sbjct: 425 ITRIMQRIFDAVCRESPLILEPG----FTVSGGIEVVESTTDRSFEDLFKAADEKLYVAK 480

Query: 249 KSGRNRVV 256
            SG+N++V
Sbjct: 481 TSGKNQLV 488


>gi|300312514|ref|YP_003776606.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1]
 gi|300075299|gb|ADJ64698.1| GGDEF domain protein [Herbaspirillum seropedicae SmR1]
          Length = 346

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 82/159 (51%), Gaps = 19/159 (11%)

Query: 107 DCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+G+ N   F+  L              +  DID FK+IND+FGH  GD+ +   +  
Sbjct: 195 DPLTGIDNRRRFMQQLPIILQAGQPSDACFLMIDIDNFKKINDDFGHASGDEALILTARA 254

Query: 162 LVVVFGTPMFVGRLGGEEFAAA----ALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +     +   +GR+GGEEF  A     L  +EQ AA L  ++R      QI+I + P   
Sbjct: 255 MQSAL-SEGALGRMGGEEFGIALSGGGLAHAEQVAAKLLQEVR------QIHIHARP--- 304

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +T+S GIA       +S ++  ADQALY AK++G++R V
Sbjct: 305 LTVSIGIARATDHSSVSKVLSAADQALYQAKRAGKDRYV 343


>gi|229494653|ref|ZP_04388413.1| diguanylate cyclase [Rhodococcus erythropolis SK121]
 gi|229318446|gb|EEN84307.1| diguanylate cyclase [Rhodococcus erythropolis SK121]
          Length = 348

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 94/192 (48%), Gaps = 11/192 (5%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------ 127
           +S T+  L  ++ G++ + L ++  R  +L+  D L+ L N   F+  +  Y+       
Sbjct: 121 VSATVIWLPVFMIGALRRSLVLTQARYRELAHTDPLTNLPNRRGFLDRIERYHRTSTVSS 180

Query: 128 -KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
            ++  +  D+D+FKQIND FGH  GD+ +  +   +       + + R GGEEF A    
Sbjct: 181 AQVGFLMIDVDHFKQINDLFGHSAGDQTLRSVVAAITRTATARVLIARSGGEEFVAFFAA 240

Query: 187 SSEQEAAILANDLR-KIIENSQINISSGPSIHITIS--AGIAERCHKEPISTIIYRADQA 243
           +   +   LA  +R  + E+  + +S G +I+ T+   AG  +    E    + +RAD  
Sbjct: 241 ADVDDVMTLAERIRASVAESCDVTVSIG-AIYCTLDDHAGSPDMSLGELTDLLTHRADAL 299

Query: 244 LYVAKKSGRNRV 255
           +Y AK  GRN V
Sbjct: 300 MYAAKAEGRNTV 311


>gi|167723092|ref|ZP_02406328.1| hypothetical protein BpseD_28998 [Burkholderia pseudomallei DM98]
          Length = 688

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 4/127 (3%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186
           KL+I+F D+D FK IND+ GHP GD+V+   S +L+        V RLGG+EF       
Sbjct: 288 KLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESV 347

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245
           SS+ EAA +A D+ + +   + N   G ++ +T S GIA      +   T++  AD A+Y
Sbjct: 348 SSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGDTADTLLRHADAAMY 405

Query: 246 VAKKSGR 252
            AK+SGR
Sbjct: 406 AAKRSGR 412


>gi|4732058|gb|AAD28578.1|AF121341_2 putative response regulator CelR2 [Rhizobium leguminosarum]
          Length = 457

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 11/176 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
            L  S  +  +L+  D L+GL N     + L        +    LS++  DID FK +ND
Sbjct: 280 RLRASVKQTIELAVTDPLTGLYNRRYLDNHLNVLFNRSMARGRPLSVLITDIDRFKHVND 339

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+   S ++           R GGEEF      +S + AA +A  LR  IE
Sbjct: 340 TYGHDGGDEVLREFSSRVRSTIRGADLACRYGGEEFVVVMPDTSPEIAAAVAERLRAAIE 399

Query: 205 NSQINIS-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++   +  SG ++++T S GIA R      P   ++ +AD ALY AK +GRNRVV 
Sbjct: 400 SAPFMLKHSGEALNVTASFGIASRIASVLTP-GQLMKQADLALYEAKNTGRNRVVA 454


>gi|325282742|ref|YP_004255283.1| diguanylate cyclase [Deinococcus proteolyticus MRP]
 gi|324314551|gb|ADY25666.1| diguanylate cyclase [Deinococcus proteolyticus MRP]
          Length = 607

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 8/168 (4%)

Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q S  D L+GL N        +A ++   S  E LS++  D+D+FK+ ND FGH  GD
Sbjct: 421 LRQQSIRDALTGLYNRRYYEDHLAASVARALSSGEPLSLLALDVDHFKRFNDTFGHDAGD 480

Query: 153 KVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            V+  +   L      T     R GGEEFA    G    EA   A+ LR  + +  +  +
Sbjct: 481 AVLVRVGAALREAAQRTGEAACRPGGEEFALLLPGVDAAEALRRADALRAEVASWTLKHA 540

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                 +TIS G+A        +++  +AD+ALY AK++GRNRV+ +S
Sbjct: 541 GLSLGRVTISVGVASLEQGGTPASLARQADEALYAAKRAGRNRVLAWS 588


>gi|291618996|ref|YP_003521738.1| YneF [Pantoea ananatis LMG 20103]
 gi|291154026|gb|ADD78610.1| YneF [Pantoea ananatis LMG 20103]
          Length = 510

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 102/194 (52%), Gaps = 14/194 (7%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG----SYN 126
           L + +I +S L+  +S   +++L     R++  +  D L+ LL+ S     L     S  
Sbjct: 306 LGVATIALSPLIVAVSMDAIRQL---NERLALRADYDFLTQLLSRSGLYEHLRNEACSEQ 362

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
            ++ ++  D+DYFK +NDNFGH  GD+V+  ++ ++  + G    + R GGEEF      
Sbjct: 363 RQVGVILLDVDYFKSVNDNFGHDAGDRVLEEIARRISPLVGNHGHICRFGGEEFVIVQFD 422

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK------EPISTIIYRA 240
            S +    LA  +R+ I   +  +  G ++ +T+S G+A    +      E ++ +I  A
Sbjct: 423 LSPEMIYSLAEGIRQSIVKEKF-LLHGNAVTVTVSLGLAYGQAQPGVEWAETVNRLISAA 481

Query: 241 DQALYVAKKSGRNR 254
           D+ LY++K++GRN+
Sbjct: 482 DKNLYISKRNGRNQ 495


>gi|291279342|ref|YP_003496177.1| hypothetical protein DEFDS_0949 [Deferribacter desulfuricans SSM1]
 gi|290754044|dbj|BAI80421.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 435

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 85/170 (50%), Gaps = 12/170 (7%)

Query: 100 ISQLSRI-----DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           +SQ SR      D L+ + N   F       I S   +    S++ FDID FK+INDNFG
Sbjct: 263 LSQKSRQQEIVSDYLTKIYNRKFFDETLKYTIKSSKRHKTPYSLISFDIDNFKKINDNFG 322

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  LS+ +           R+GGEEFA     ++ + A+ILA  +R+ +EN  
Sbjct: 323 HDKGDTVLIELSNIVKSNLRQSDIFARIGGEEFAIILPQTNFKGASILAEKIREHVENHH 382

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + +   ++ I++     E       +T+    D ALY AKK G+NRVV 
Sbjct: 383 FSFNKEYTVTISLGLISIEEDFDVDFNTLYKLVDNALYQAKKEGKNRVVA 432


>gi|260776362|ref|ZP_05885257.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607585|gb|EEX33850.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 488

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 98/200 (49%), Gaps = 18/200 (9%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH---SAF 118
           +Y L+   SL I+ +T+   L Y++  + +  F       +L+  D ++GLLN     AF
Sbjct: 301 KYSLIVTGSLYILLVTV---LFYVNTRVERSYF------RELAARDPMTGLLNRRGMEAF 351

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           + +  +++E L++   DID FK IND +GH VGD  I F+++Q+         V R GGE
Sbjct: 352 LRNT-THSEYLALSVLDIDNFKSINDAYGHDVGDDAICFMAEQIEKNIRDSDAVARFGGE 410

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG--IAERCHKEPISTI 236
           EF     G   ++  +    +R+ I     N+  G     T+S G  I           +
Sbjct: 411 EFVVYLRGRDVEKMRMTMERVREAISRYSANVVEGG---FTVSGGVEIVRTEENSDFERL 467

Query: 237 IYRADQALYVAKKSGRNRVV 256
              AD+ LY AK SG+NR+V
Sbjct: 468 FKAADEKLYEAKNSGKNRLV 487


>gi|206579932|ref|YP_002240580.1| membrane-associated diguanylate cyclase [Klebsiella pneumoniae 342]
 gi|288937275|ref|YP_003441334.1| diguanylate cyclase [Klebsiella variicola At-22]
 gi|290512679|ref|ZP_06552045.1| membrane-associated diguanylate cyclase [Klebsiella sp. 1_1_55]
 gi|206568990|gb|ACI10766.1| membrane-associated diguanylate cyclase [Klebsiella pneumoniae 342]
 gi|288891984|gb|ADC60302.1| diguanylate cyclase [Klebsiella variicola At-22]
 gi|289775020|gb|EFD83022.1| membrane-associated diguanylate cyclase [Klebsiella sp. 1_1_55]
          Length = 348

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 121/267 (45%), Gaps = 22/267 (8%)

Query: 8   FLSIWLCH--EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYIL 65
           F  +W  H   K +    PH   +  ++   +FI T+ F  NI  F +   P + +  I+
Sbjct: 78  FGMLWAWHVVAKAMLLTPPHFNYLVIALLSILFIGTIAFSNNITAFTLHSLPTFLICLIM 137

Query: 66  VEN---------LSLVIISITISLLL----GYISGSILKELFISYNRISQLSRIDCLSGL 112
            E            L I  IT+  ++       +  ++ +L    N ++ LS +D L+GL
Sbjct: 138 SEGEQWLRMTYCFVLPIAGITLQNIIQKRNDAFTQGLMDKLMQERNTLNDLSMLDPLTGL 197

Query: 113 LNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +      +   ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 198 YNRRGLQNRLDTLLALDGDNHFVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRNAVRS 257

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN--ISSGPSIHITISAGIAE 226
              V R GGEEF      SSE+ A   A  +R+ + + +I    +   + ++TIS G+  
Sbjct: 258 RDIVARFGGEEFMVLLTNSSEETAWQAAERIRQRVYDLKIPHMFNESVATNVTISIGLTP 317

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRN 253
               + I   + RAD ALY AK  GRN
Sbjct: 318 LI-DDNIEQALARADGALYEAKNKGRN 343


>gi|254246830|ref|ZP_04940151.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
 gi|124871606|gb|EAY63322.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
          Length = 460

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 14/178 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142
           ++LF ++  + + S  D L+G  N        H+ F+ +     E LS++  D+D FK  
Sbjct: 283 QQLFEAHATLIRSSARDGLTGAFNRSHFNDHFHTLFLQAR-RQGEPLSLLMVDVDRFKAY 341

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD  +  +++ L      P   V R GGEEFA     +  + A ++A+++R 
Sbjct: 342 NDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEFAIVLPNTGARGARVVADEVRD 401

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256
            +    + +   P+  +++S G A     + +ST   +I  AD ALY AK +GRNRVV
Sbjct: 402 AVLRLDLAMPDSPAGRVSVSVGCATVAADD-LSTPDALIEAADAALYRAKDAGRNRVV 458


>gi|90410000|ref|ZP_01218017.1| hypothetical protein P3TCK_04516 [Photobacterium profundum 3TCK]
 gi|90329353|gb|EAS45610.1| hypothetical protein P3TCK_04516 [Photobacterium profundum 3TCK]
          Length = 291

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 92/179 (51%), Gaps = 11/179 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQ 141
           S++ +      ++  L+  D L+GL N   FI +       GS +E  S+   DID FK 
Sbjct: 111 SVVTDRIQREKQLINLAARDELTGLFNRRYFIETYNTLIKSGSIHE-YSMAIVDIDLFKN 169

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND++GH  GDK++  +++ +         + RLGGEEF       S  +       LR 
Sbjct: 170 VNDSYGHLAGDKMLTHIANTVSESMNEDEHIARLGGEEFVLLLKEGSHVKLVSRLETLRD 229

Query: 202 IIENSQINISSG---PS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            I+N ++++ S    PS I  T+S G+ +        +  ++AD+ALY AK++GRN+VV
Sbjct: 230 TIQNQKVSVLSTHNVPSVISCTVSIGLTKIMKNTTFKSSYFKADRALYQAKRNGRNQVV 288


>gi|24251273|gb|AAN46193.1| unknown protein [Synechococcus elongatus PCC 7942]
          Length = 960

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 11/169 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS---------YNEKLSIVFFDIDYFKQINDNFGH 148
            ++ Q +  D L+G+LN   FI+   +          +  LS+V  DID+FK IND++GH
Sbjct: 782 QKLQQQATTDALTGILNRRQFITLAQAELNRIYRIQRDTSLSLVIIDIDHFKTINDSYGH 841

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+V+   ++             RLGG+EF      ++ ++A  + + +R+++    +
Sbjct: 842 TVGDQVLILWTNICQQNIREVDIFARLGGDEFVLMLPETNGKQAYQVMDRIRQLVIQQSL 901

Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           ++    +I ITIS GIA    +   +   + RAD+ALY AK+ GR+R++
Sbjct: 902 HLPQ-QAIAITISVGIAVWTPEILTLDQFLERADRALYQAKQQGRDRII 949


>gi|42525094|ref|NP_970474.1| hypothetical protein Bd3766 [Bdellovibrio bacteriovorus HD100]
 gi|39577305|emb|CAE81128.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
          Length = 627

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 17/170 (10%)

Query: 99  RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +L+  D L+ + N           IS+     + +S+V FDID+FK+IND FGH VG
Sbjct: 456 RMRELAMTDELTRIPNRRHVLEYAQQSISTCQRQGKSMSVVIFDIDHFKRINDTFGHAVG 515

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+VI  +++   +       +GR+GGEEF      +    A  +A  LR+ I  S  + +
Sbjct: 516 DEVIKRVAEIGKMALRKGDMIGRIGGEEFLLILPFTEPLPAKEVAERLRREI--SLYDFT 573

Query: 212 S-GPSIHITISAGIAERCH-----KEPISTIIYRADQALYVAKKSGRNRV 255
              P++ +T+SAG++  C+     +  I ++I +AD+ALY  K++GRN V
Sbjct: 574 DLAPNLTVTVSAGVS--CYTATDKQGHIDSLIQQADEALYSVKQNGRNGV 621


>gi|88857654|ref|ZP_01132297.1| sensory box protein [Pseudoalteromonas tunicata D2]
 gi|88820851|gb|EAR30663.1| sensory box protein [Pseudoalteromonas tunicata D2]
          Length = 725

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 93/173 (53%), Gaps = 11/173 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S   I Q +  D L+GL N + F       IS    Y +K ++ F D+D+FK++ND  GH
Sbjct: 284 SQQMIWQQANFDHLTGLPNRNMFTERLKQEISESKRYQQKFALFFIDLDHFKEVNDTLGH 343

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+++  ++++L ++      +GR+GG+EF   AL     +   + +  +K+I+  ++
Sbjct: 344 GAGDQLLIEVAERLQLILRESDTIGRIGGDEF--TALIPHINQTCDIDSLAQKLIQTIEL 401

Query: 209 NIS-SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                G SI I+ S GI     H E I  ++  ADQA+Y +K++GR R   F+
Sbjct: 402 PFYIDGESIFISASIGITLFPDHSEKIDELLKFADQAMYRSKENGRKRFSYFT 454


>gi|120556492|ref|YP_960843.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120326341|gb|ABM20656.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 364

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 8/159 (5%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GL N       L +            S+V  D+D FK+IND+FGH  GD+V+ 
Sbjct: 190 ARTDELTGLANRRDMQGRLNTEFSRFERSGHHFSVVLIDLDLFKRINDDFGHDAGDEVLR 249

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             +D +  +        R GGEEF      ++  +A  LA  LR  +  ++ +     ++
Sbjct: 250 QFADLVRQMVRQSDVAARWGGEEFLLLLPDTTLLQALTLAERLRAEVAATRFHHRE-QTL 308

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +TISAG+        I+ ++ +AD  LY AK+SGRNR+
Sbjct: 309 PVTISAGVCSISKSGSINELLKQADVQLYNAKESGRNRI 347


>gi|326622086|gb|EGE28431.1| AdrA protein [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 365

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
            LSL +I +   LL  ++S     +L     R+  +S  D ++G+ N   +   L +   
Sbjct: 169 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 227

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               ++ + +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EF
Sbjct: 228 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQLTLRGSDIIGRFGGDEF 287

Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237
           A    G+   ++AI A  + ++ E  + + +   P + + IS G+A      P++  I  
Sbjct: 288 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 338

Query: 238 YR-----ADQALYVAKKSGRNRV 255
           YR     AD ALY AK +GRNR 
Sbjct: 339 YREWLKSADMALYKAKNAGRNRT 361


>gi|313895972|ref|ZP_07829526.1| diguanylate cyclase (GGDEF) domain protein [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312975397|gb|EFR40858.1| diguanylate cyclase (GGDEF) domain protein [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 591

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 18/180 (10%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL  +  R+SQL+  D L+ LLN           +         L+++  DID+FK +N
Sbjct: 411 EELNSANRRLSQLASRDALTNLLNRREMERLLQEAVRDAQENRTLLTVMLMDIDHFKGVN 470

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGDKV+  ++D +           R GG+EF     G++ + A  +   +R+ +
Sbjct: 471 DTYGHDVGDKVLLTVADAISGTIRGSDAGCRWGGDEFFVILQGATLELAGRVGERIRRRV 530

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPIS----TIIYRADQALYVAKKSGRNRVVCFS 259
           E +++        ++T+S G+A   H +P       +   AD+ALY AKK GRN V C  
Sbjct: 531 EAAKMAFDG----NVTVSIGVA---HFDPERDNELQLFKNADEALYRAKKEGRNAVYCLG 583


>gi|307824674|ref|ZP_07654898.1| diguanylate cyclase/phosphodiesterase [Methylobacter tundripaludum
           SV96]
 gi|307734328|gb|EFO05181.1| diguanylate cyclase/phosphodiesterase [Methylobacter tundripaludum
           SV96]
          Length = 734

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 8/164 (4%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F       I     +  + S++  D+D FK IND++GHP GD  +  ++
Sbjct: 310 DPLTGLHNRRQFNDILHYEIGRSERHKHEFSVLMLDLDDFKDINDSYGHPTGDTALCAIA 369

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           D L+          R+GG+EFA     +  + A ++A ++ + +    I  S G   H+T
Sbjct: 370 DALLEHTRNGDLCARIGGDEFAIILTETGPEGARVVAENVSRALREMAITSSQGNRFHLT 429

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +S G+       + I T++   D A+Y AK  G++ V  F   E
Sbjct: 430 VSIGVTSYPVDGQTIDTLLEGVDAAMYKAKDMGKDSVCTFDATE 473


>gi|229098515|ref|ZP_04229456.1| Sensory box/GGDEF family protein [Bacillus cereus Rock3-29]
 gi|229117541|ref|ZP_04246913.1| Sensory box/GGDEF family protein [Bacillus cereus Rock1-3]
 gi|228665861|gb|EEL21331.1| Sensory box/GGDEF family protein [Bacillus cereus Rock1-3]
 gi|228684837|gb|EEL38774.1| Sensory box/GGDEF family protein [Bacillus cereus Rock3-29]
          Length = 430

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ ID L+ + N   F   L          +EK++I+ FDID FK +ND +GH 
Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILEVEWDNVIRNDEKMAIILFDIDNFKTVNDTYGHD 320

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 321 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 379

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             SG S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 380 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCIY 425


>gi|187927638|ref|YP_001898125.1| diguanylate cyclase [Ralstonia pickettii 12J]
 gi|187724528|gb|ACD25693.1| diguanylate cyclase [Ralstonia pickettii 12J]
          Length = 585

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 13/165 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           +S+++  D L+ LLN  AF    G+  +        ++++ FDID+FK+IND +GH VGD
Sbjct: 405 LSRMAETDPLTQLLNRRAFEDRAGAMCKSPQPKARLIALIMFDIDHFKRINDTYGHAVGD 464

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  ++        +   V R+GGEEFA      S  +A  +A+ LR  I  +++ + +
Sbjct: 465 EALRTVARLCRSEGPSADMVARIGGEEFAVMVWADSLAQARAVADHLRHRI--AEVTVPT 522

Query: 213 GPSIHITISA----GIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           G  +  +++A      A       +  ++ RAD  LY AK +GRN
Sbjct: 523 GTDLPCSMTASFGVAAAPAADGPELEPLLRRADHLLYAAKLAGRN 567


>gi|16263692|ref|NP_436485.1| Diguanylate cyclase [Sinorhizobium meliloti 1021]
 gi|14524407|gb|AAK65897.1| Diguanylate cyclase [Sinorhizobium meliloti 1021]
          Length = 448

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 12/180 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL  +  R+ +L++ D L+G+ N    + +L              +++  DID FK +ND
Sbjct: 263 ELADANARLERLAKTDPLTGIANRRWMMETLNRLWSSGAERRPGTAMLMCDIDDFKSLND 322

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GH  GD+ +  ++  +   V      V R GGEEF     G++E+ A   A  +R  +
Sbjct: 323 RLGHAEGDRCLVKVAGIIQSSVRRNRDHVARYGGEEFLVVLPGANEEAAVATAERIRASV 382

Query: 204 ENSQI-NISSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNRVVCFS 259
           E + + N +S  + ++T+S G+A +   E I     +  +AD ALY+AK++GRNRVV + 
Sbjct: 383 EAASLPNPASRVAPYVTLSIGVAAQAPGEEIVAPEKLQNQADAALYLAKQAGRNRVVLYQ 442


>gi|89094787|ref|ZP_01167721.1| diguanylate cyclase (GGDEF domain) [Oceanospirillum sp. MED92]
 gi|89080952|gb|EAR60190.1| diguanylate cyclase (GGDEF domain) [Oceanospirillum sp. MED92]
          Length = 474

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 13/165 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  ++  D L+GL N +         ++    YN    +V  D+D+FK++ND++GH VG
Sbjct: 314 KLELMATTDKLTGLYNRTKIDELLQNELNRTERYNHDFGVVMIDVDFFKEVNDHYGHHVG 373

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INI 210
           D+V+   +D L        + GR GG+EF      +  +   ++A+ L   I N + + I
Sbjct: 374 DEVLKEYADILSNEIRRTDYAGRWGGDEFIVICPETDIEGLKLIASKLCDAIANHEFVVI 433

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             G     T S GI+     + I+T++ RAD+ALY AK  GRN V
Sbjct: 434 GDG-----TASLGISTPQDGDTITTLLNRADKALYQAKNDGRNTV 473


>gi|94311111|ref|YP_584321.1| diguanylate cyclase [Cupriavidus metallidurans CH34]
 gi|93354963|gb|ABF09052.1| diguanylate cyclase (GGDEF domain protein) [Cupriavidus
           metallidurans CH34]
          Length = 416

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 91/185 (49%), Gaps = 17/185 (9%)

Query: 94  FISYNRISQL----SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
            ++++R+ Q+    +R D L+ +L+  AF   L           + L++ F D+D+FK I
Sbjct: 222 LMAHDRLRQIIERRARHDDLTDVLSRGAFWEELELACKQAERSRKPLTVAFMDLDHFKAI 281

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD V+   +  L  V      +GRLGGEEFA     +  +    ++  L  +
Sbjct: 282 NDLYGHLAGDSVLRHFAGLLRKVAAPDSVIGRLGGEEFAIVMPATGLETGRAISVRLSAL 341

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS--D 260
           +  +       P I  T+S G+AE    E    ++ R+D+ALY AK+ GRN   C S  D
Sbjct: 342 VRATPCPSEPDP-IAYTVSIGMAEWQLGENADAVMRRSDRALYDAKQMGRN---CVSSHD 397

Query: 261 IENNT 265
            E  T
Sbjct: 398 AEEFT 402


>gi|332529343|ref|ZP_08405304.1| PAS family GGDEF/EAL protein [Hylemonella gracilis ATCC 19624]
 gi|332041141|gb|EGI77506.1| PAS family GGDEF/EAL protein [Hylemonella gracilis ATCC 19624]
          Length = 772

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 17/172 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           + +L+  D L+GL N      +L    +    L+++  D+D FK +NDN GH  GD V+ 
Sbjct: 344 LRRLAHTDSLTGLANRFMLRDTLNRLIAQKRPLALLAIDLDRFKAVNDNHGHSAGDAVLQ 403

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILANDLRKIIENSQINIS 211
            ++++L     T   + RLGG+EFA      A L  ++  A  + + L + +E    ++ 
Sbjct: 404 AVAERLRAHLPTEALLARLGGDEFAVVLSEPADLPKADTLAQRVVDALAQPVEIGSRSLR 463

Query: 212 SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSDI 261
            G S+ +T         H EP+S   ++ +AD A+Y AK+SGR R   ++ +
Sbjct: 464 IGASVGLTTR-------HNEPVSLDGLLVQADMAMYAAKESGRGRWARYTPL 508


>gi|240139060|ref|YP_002963535.1| diguanylate cyclase precursor with GGDEF motif; putative membrane
           protein [Methylobacterium extorquens AM1]
 gi|240009032|gb|ACS40258.1| diguanylate cyclase precursor with GGDEF motif; putative membrane
           protein [Methylobacterium extorquens AM1]
          Length = 405

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 42/268 (15%)

Query: 9   LSIWLCHEKNLESFSPHT---------FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY 59
           L+IW   ++ L S  P           + I   + F++ I   + IA         +P++
Sbjct: 136 LTIWQGRDEPLVSRYPALVLLATYAGLYWIRLPLAFTMPIPASVAIA---------SPWF 186

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
            +         L       S+ + ++  ++ KE      R++  +  D L+G+ N  A +
Sbjct: 187 AI---------LCFAGTLFSVAIAFVFMALTKERAEREQRLA--AETDSLTGIANRRALV 235

Query: 120 SSLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIA---FLSDQLVVVFGTPMFV-G 173
           +    +          FD+D+FK +ND +GH VGD V+A    ++D L+     P  V G
Sbjct: 236 AGAERHLAVAPAALLLFDLDHFKAVNDRYGHSVGDAVLAAFCHVADPLL----PPGAVFG 291

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEP 232
           R+GGEEFA       E+ A  +A D+R  I  ++      P + I +S G+A        
Sbjct: 292 RMGGEEFACLLPRLDERAAMRVAEDVRAAI--ARFAHPDYPELAIRVSVGVAAESQIGGS 349

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  ++ RAD ALY AK +GR+RVV   +
Sbjct: 350 LDYLLRRADDALYQAKHAGRDRVVAAGE 377


>gi|205359321|ref|ZP_02668878.2| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205337060|gb|EDZ23824.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
          Length = 308

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 22/276 (7%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58
           F  IW  H      +   + F  +  S+   +FI ++ F ANI  F +  L P       
Sbjct: 32  FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 91

Query: 59  ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112
                GL  + +  L +V I+I   +   Y   +  ++ +L      ++ LS +D L+GL
Sbjct: 92  NGNEQGLRILYLLALPMVGIAIQHVIQKSYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 151

Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +     S    ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 152 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 211

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      +  Q+A   A  +R+ + + +I      S+  ++T+S GIA 
Sbjct: 212 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 271

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              +  I   I +AD+ALY AK  GRN ++   D+ 
Sbjct: 272 LTDRN-IGDAIEKADKALYEAKHLGRNHILVSDDMR 306


>gi|254410216|ref|ZP_05023996.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196183252|gb|EDX78236.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 327

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
            + ++L  +   + +L+ +D L+G+ N   F   L             LS++  DID+FK
Sbjct: 145 QLYQKLEQANRELQRLATLDGLTGVANRRRFDQYLDDEWWRMIREESPLSLILCDIDFFK 204

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199
           + ND +GH  GD  +  ++D L       +  V R GGEEFA     ++   A+++A +L
Sbjct: 205 KYNDTYGHQAGDACLRRVADALRFCAKRSVDLVARYGGEEFAIVLPNTTTIGASLVAEEL 264

Query: 200 RKIIENSQI-NISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256
           R ++   +I + +S  S ++T+S G+A    +   P + ++  AD ALY AK SGRNR V
Sbjct: 265 RSLVHGLKITHAASAISEYVTLSLGVASLYPEPDTPPAKLVAEADMALYQAKASGRNRYV 324

Query: 257 C 257
            
Sbjct: 325 A 325


>gi|126657184|ref|ZP_01728350.1| GGDEF family protein [Cyanothece sp. CCY0110]
 gi|126621455|gb|EAZ92166.1| GGDEF family protein [Cyanothece sp. CCY0110]
          Length = 509

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 109/223 (48%), Gaps = 29/223 (13%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILK-------------ELFISYNRISQL 103
           PFY L  + +  +  +II+    LL+  ++ ++L+             +L  +   +S+L
Sbjct: 265 PFYSLSMLWI-TIGGIIIAFLTGLLIFSLTKTLLQLNQEIKERKEVELQLTKTNKELSKL 323

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           + +D L+ + N   F        + L    E LS++  D+DYFK+ ND +GHP GD+ + 
Sbjct: 324 ASLDGLTQIANRYYFDTYLKKEWNRLSRQREPLSLILCDVDYFKKYNDRYGHPQGDECLK 383

Query: 157 FLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGP 214
            ++  +      P     R GGEEFA     ++   A  +A +L+K I N ++ +  S  
Sbjct: 384 QVAKAIEKAAQRPADLAARFGGEEFAMILPKTNLDGAIKVAKNLQKYISNLKLEHKQSQI 443

Query: 215 SIHITISAGIAE-RCHKEPI---STIIYRADQALYVAKKSGRN 253
           + +IT+S GIA   CH  P      +I  AD ALY +K  GRN
Sbjct: 444 NQYITLSIGIAHTHCH--PFYSSQKLIDAADHALYRSKNKGRN 484


>gi|257094362|ref|YP_003168003.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257046886|gb|ACV36074.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 357

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 10/176 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQIN 143
           ++L     R  + + ID L+GL N   F  +L +  E+ +       ++  D+D FK++N
Sbjct: 164 QQLRQEVARAREEALIDGLTGLSNRKGFDLALTTCLEQATPEMPGPCLLMIDLDNFKRLN 223

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+V++ +   L           R GGEEFA     +    A  LA  LR ++
Sbjct: 224 DGLGHVFGDRVLSSVGQILRANVKGKDTAARYGGEEFAVILPQTPRGGAIGLAEALRALV 283

Query: 204 ENSQINI--SSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             S+I      GP I +IT+S G+A+    E  +  + RAD+ALY+AK  GRNRV+
Sbjct: 284 AASRIRRVGDEGPLIGNITVSIGVADYLAGESPTDFVNRADRALYLAKTQGRNRVI 339


>gi|254561654|ref|YP_003068749.1| diguanylate cyclase [Methylobacterium extorquens DM4]
 gi|254268932|emb|CAX24893.1| diguanylate cyclase precursor with GGDEF motif; putative membrane
           protein [Methylobacterium extorquens DM4]
          Length = 405

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 42/268 (15%)

Query: 9   LSIWLCHEKNLESFSPHT---------FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY 59
           L+IW   ++ L S  P           + I   + F++ I   + IA         +P++
Sbjct: 136 LTIWQGRDEPLVSRYPALVLLATYAGLYWIRLPLAFTMPIPASVAIA---------SPWF 186

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
            +         L       S+ + ++  ++ KE      R++  +  D L+G+ N  A +
Sbjct: 187 AI---------LCFAGTLFSVAIAFVFMALTKERAEREQRLA--AETDSLTGIANRRALV 235

Query: 120 SSLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIA---FLSDQLVVVFGTPMFV-G 173
           +    +          FD+D+FK +ND +GH VGD V+A    ++D L+     P  V G
Sbjct: 236 AGAERHLAVAPAALLLFDLDHFKAVNDRYGHSVGDAVLAAFCHVADPLL----PPGAVFG 291

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEP 232
           R+GGEEFA       E+ A  +A D+R  I  ++      P + I +S G+A        
Sbjct: 292 RMGGEEFACLLPRLDERAAMRVAEDVRAAI--ARFAHPDYPELAIRVSVGVAAESQIGGS 349

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  ++ RAD ALY AK +GR+RVV   +
Sbjct: 350 LDYLLRRADDALYQAKHAGRDRVVAAGE 377


>gi|224586375|ref|YP_002640174.1| hypothetical protein SPC_4690 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224470903|gb|ACN48733.1| hypothetical protein SPC_4690 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 354

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 118/250 (47%), Gaps = 20/250 (8%)

Query: 32  SIFFSIFIATVIFIANIFLFYI-GLTPF----------YGLEYILVENLSLVIISITISL 80
           S+   +FI ++ F ANI  F +  L P            GL  + +  L +V I+I   +
Sbjct: 104 SLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWLNGNEQGLRILYLLALPMVGIAIQHVI 163

Query: 81  LLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFF 134
              Y   +  ++ +L      ++ LS +D L+GL N     + L +     S    ++  
Sbjct: 164 QKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGLYNRRGLQNRLDTLQAPGSHEHYVLLL 223

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK  ND++GH +GD+ +  +S  +     +   V R GGEEF      +  Q+A  
Sbjct: 224 DIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTTAEPQQARA 283

Query: 195 LANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            A  +R+ + + +I    +   + ++TIS GIA    +  I   I +AD+ALY AK  GR
Sbjct: 284 TAERIRQEVYDLKIPHMFNESVATNVTISIGIAPLTDRN-IGDAIEKADKALYEAKHLGR 342

Query: 253 NRVVCFSDIE 262
           N ++   D+ 
Sbjct: 343 NHILVSDDMR 352


>gi|168234685|ref|ZP_02659743.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194738368|ref|YP_002117468.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194713870|gb|ACF93091.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197291857|gb|EDY31207.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 304

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 22/276 (7%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58
           F  IW  H      +   + F  +  S+   +FI ++ F ANI  F +  L P       
Sbjct: 28  FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 87

Query: 59  ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112
                GL  + +  L +V I+I   +   Y   +  ++ +L      ++ LS +D L+GL
Sbjct: 88  NGNEQGLRILYLLALPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 147

Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +     S    ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 148 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 207

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      +  Q+A   A  +R+ + + +I      S+  ++T+S GIA 
Sbjct: 208 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 267

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              +  I   I +AD+ALY AK  GRN ++   D+ 
Sbjct: 268 LADRN-IGDAIEKADKALYEAKHLGRNHILVSDDMR 302


>gi|39997411|ref|NP_953362.1| response regulator [Geobacter sulfurreducens PCA]
 gi|39984302|gb|AAR35689.1| response regulator [Geobacter sulfurreducens PCA]
 gi|298506348|gb|ADI85071.1| response receiver-modulated diguanylate cyclase [Geobacter
           sulfurreducens KN400]
          Length = 301

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 83/157 (52%), Gaps = 9/157 (5%)

Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G++N  A I       S +      LSI   DID+FK++ND +GH  GD+V+    
Sbjct: 142 DPLTGVMNRRAIIDHLEKELSRVKRDGGSLSIGILDIDHFKRVNDRYGHQTGDEVLCGCV 201

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L  +      +GRLGGEEF   A G+ + +   L   LR  I +++    + P + +T
Sbjct: 202 GVLGGLLRDYDLLGRLGGEEFLVVAPGTGD-DCNHLYERLRAAIASTKFTSRAKP-VSVT 259

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +S G+A       +  ++  AD ALY AK+SGR+RVV
Sbjct: 260 VSIGVAACDGTAGLDELLAAADDALYRAKRSGRDRVV 296


>gi|330952727|gb|EGH52987.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 355

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 112/240 (46%), Gaps = 15/240 (6%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV---IISIT 77
           S S    +I  S    ++    + +A   L +  L+P  GL+   V  L +    I S++
Sbjct: 97  SLSVAVMIILCSTLLVVYTRDYLLVA--VLAWCILSPAQGLDTDSVATLFMTLFFITSVS 154

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFF 134
           +  ++ +     L+ +    ++  +LS  D L+ +LN  A + +L  +   N     +  
Sbjct: 155 LGSVMNHTYTRTLRTVLSLEHQFRELSLTDDLTPILNRRALMQALDKHVLNNSAGYFLML 214

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID FK IND FGH  GD+ +  ++  L    G+  F GR+GGEEF       SE EA  
Sbjct: 215 DIDDFKTINDQFGHDAGDQALRVMAGCLQKTVGSLAF-GRMGGEEFGVILPMCSEDEARE 273

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
              +L   I  S   ++  P   +T SAG+A+       S ++  AD  LY AK+ G++R
Sbjct: 274 YVLNLLDCIRKS---LAVSP---LTCSAGLADIPAAVDSSEVLKTADINLYQAKRGGKDR 327


>gi|297566221|ref|YP_003685193.1| diguanylate cyclase [Meiothermus silvanus DSM 9946]
 gi|296850670|gb|ADH63685.1| diguanylate cyclase [Meiothermus silvanus DSM 9946]
          Length = 247

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 100/192 (52%), Gaps = 11/192 (5%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYN 126
           I+ + I+ +  Y    ++ +L  +Y+ + +LS  D L+   N   FI       ++   +
Sbjct: 51  IVPLIIAPVFSYFQLRLIAQLEQAYSELHRLSITDYLTNTHNRRYFIQQAQQMFAMAQRD 110

Query: 127 EK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            K LS++ FD D FK+IND  GH VGD+V+A +++           V R GGEEFA    
Sbjct: 111 LKPLSVLLFDADDFKKINDTHGHLVGDQVLARIAEVTRAHVRKGDLVARYGGEEFAVLLP 170

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQA 243
            +   EA  +A  + + I N+ +  +  P I  T+S G+   E  H+  +  ++ +AD A
Sbjct: 171 NTQIPEALEVAMRIHQEILNNPVTYAGSP-IVATVSMGVVALELSHRT-LDELLAKADGA 228

Query: 244 LYVAKKSGRNRV 255
           LY AK +G+NR+
Sbjct: 229 LYRAKNTGKNRI 240


>gi|167582365|ref|ZP_02375239.1| GGDEF domain protein [Burkholderia thailandensis TXDOH]
          Length = 454

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 9/176 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L+EL  +  ++  L+  D L+G  N   FI  + +            S++  D+D FK I
Sbjct: 279 LQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQAEIARAKRDGTAFSLLALDLDNFKTI 338

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           NDN+GH VGD V+     Q +        + R+GGEEF           A+ +A  +R  
Sbjct: 339 NDNYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRTT 398

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           I N+   I  G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV 
Sbjct: 399 IANASFGI-DGTHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 453


>gi|26987301|ref|NP_742726.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas putida KT2440]
 gi|24981947|gb|AAN66190.1|AE016246_7 response regulator [Pseudomonas putida KT2440]
          Length = 451

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 82/158 (51%), Gaps = 10/158 (6%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +  L           + LS    DID+FK+IND  GHP+GD+VI  L+
Sbjct: 292 DSLTGLYNHTHILQLLEDCSFRARREQQPLSFAMLDIDHFKKINDRHGHPMGDRVIKSLA 351

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218
             L        F+GR GGEEFA     ++   A  + +++R+    ++I   + P  +  
Sbjct: 352 LFLKQRLRKTDFIGRYGGEEFAIVMPNTALDAAHKVLDEIRRRF--AEILYPAQPRDLQC 409

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T SAG+ +        T+   AD+ALY AK +GRN VV
Sbjct: 410 TFSAGVVQLDEGLDALTMASAADEALYRAKHAGRNCVV 447


>gi|171319506|ref|ZP_02908608.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
 gi|171095278|gb|EDT40266.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
          Length = 492

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 92/194 (47%), Gaps = 14/194 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128
           I +S++LG    + L+    + + +  L+R D L+GL N  +F   L     +       
Sbjct: 300 IAVSVMLG----TQLRRRMRAESELVLLARTDGLTGLNNRRSFGEVLDREWRRARRSRSV 355

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187
            S++F D+D FK  ND +GH  GD  +A ++  +      P     R GGEEF      +
Sbjct: 356 FSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTAARYGGEEFVVLLPDT 415

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALY 245
            E  AA +A  +R  I+   +  +     H+T S G+A       E   ++I  AD+ALY
Sbjct: 416 PETGAAQIAERIRAAIDELALEHAGSEHGHVTASIGLASWTPEEDEEAGSVIKAADEALY 475

Query: 246 VAKKSGRNRVVCFS 259
            AK +GRN+V  F 
Sbjct: 476 YAKAAGRNKVAAFQ 489


>gi|217975287|ref|YP_002360038.1| PAS/PAC and Chase sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS223]
 gi|217500422|gb|ACK48615.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella baltica OS223]
          Length = 1215

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 10/182 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + E  +S  RI  L+  D L+ L N  +  S L        + + +++++F D+D+FK I
Sbjct: 776 ISERKVSEERIHFLAHHDSLTLLPNRLSLQSRLEVVFREALASDSQIAVMFIDMDHFKNI 835

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH VGD+++  ++ +L  + G    V RLGG+EF  A   ++  E A LA  LR  
Sbjct: 836 NDTLGHHVGDQLLLEVARRLKNIVGDTDTVARLGGDEFVVALSDTNHDEVASLAEALRSG 895

Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +  SQ  I +  ++H + S GI+      + +  ++  AD A+Y AK +GRN    F+  
Sbjct: 896 L--SQTYIINNQALHSSPSIGISLFPTDGDSVEALMKNADMAMYRAKSAGRNNYQFFTAA 953

Query: 262 EN 263
            N
Sbjct: 954 MN 955


>gi|153002714|ref|YP_001368395.1| PAS/PAC and Chase sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|151367332|gb|ABS10332.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella baltica OS185]
          Length = 1215

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 10/182 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + E  +S  RI  L+  D L+ L N  +  S L        + + +++++F D+D+FK I
Sbjct: 776 ISERKVSEERIHFLAHHDSLTLLPNRLSLQSRLEVVFREALASDSQIAVMFIDMDHFKNI 835

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH VGD+++  ++ +L  + G    V RLGG+EF  A   ++  E A LA  LR  
Sbjct: 836 NDTLGHHVGDQLLLEVARRLKNIVGDTDTVARLGGDEFVVALSDTNHDEVASLAEALRSG 895

Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +  SQ  I +  ++H + S GI+      + +  ++  AD A+Y AK +GRN    F+  
Sbjct: 896 L--SQTYIINNQALHSSPSIGISLFPTDGDSVEALMKNADMAMYRAKSAGRNNYQFFTAA 953

Query: 262 EN 263
            N
Sbjct: 954 MN 955


>gi|170721412|ref|YP_001749100.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida W619]
 gi|169759415|gb|ACA72731.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida W619]
          Length = 699

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 88/179 (49%), Gaps = 17/179 (9%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVF-FDIDYFKQIND 144
           E   ++ +I  ++  D L+GL N + F   L      G  N+KL+     D+D FK IND
Sbjct: 264 EELAAHAQIHHMAHHDALTGLPNRTLFNERLKQALVRGHQNDKLTAALCLDLDNFKNIND 323

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH  GDK++  L  +L         + RLGG+EFA    G   +EAA   N  +++IE
Sbjct: 324 SLGHAFGDKLLRALGKRLRRELREQDTLARLGGDEFAVVLTGLDGREAAC--NTAKRLIE 381

Query: 205 NS----QINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 QI    G    + +S GIA      E    ++  AD ALY AK++GRNR  CF
Sbjct: 382 AICPPFQI---EGHQFTVGVSIGIAIAPDDNEQAEQLLGYADMALYEAKRNGRNRYECF 437


>gi|89092611|ref|ZP_01165564.1| serine/threonine kinase with two-component sensor domain
            [Oceanospirillum sp. MED92]
 gi|89083123|gb|EAR62342.1| serine/threonine kinase with two-component sensor domain
            [Oceanospirillum sp. MED92]
          Length = 1752

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 6/160 (3%)

Query: 104  SRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            +  D L+G+LN  A +     Y     +E + +   D+DYFK++ND + H  GD+V+   
Sbjct: 1593 AHTDPLTGILNRRAVLDLSSQYKKAAEDESVFVAMLDLDYFKRLNDTYSHSAGDQVLKAF 1652

Query: 159  SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
            + ++  +        R+GGEEF       SE++A ++   +R+ I    +   S   + +
Sbjct: 1653 ASEVSGLLRDGDVFARMGGEEFLVMLSVGSEEQAELILQRIREKIAMMTVPFDS-VDLKV 1711

Query: 219  TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            T+S G A          + ++AD ALY AK  GRN VVC 
Sbjct: 1712 TVSIGFAAWSSDAEFKQVTHQADLALYEAKGRGRNMVVCL 1751


>gi|260767442|ref|ZP_05876379.1| sensory box/GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260617554|gb|EEX42736.1| sensory box/GGDEF family protein [Vibrio furnissii CIP 102972]
          Length = 606

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 87/173 (50%), Gaps = 21/173 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS---------YNEKLSIVFFDIDYFKQINDNFGH 148
           N++ +LS  D L+ L N   F   L +         +N    +V  DID+FK+IND  GH
Sbjct: 439 NQLRELSEKDSLTHLWNRRKFEQELQTQTQLVERYAHNHDACLVLIDIDFFKRINDEQGH 498

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+VI  ++  L     +  F+ R+GGEEFA     ++  EA  + + LR  +   Q 
Sbjct: 499 DQGDRVIIQVAQILTHQLRSTDFIARIGGEEFAVIMPHTAIDEAHRVVDRLRAAVAIDQ- 557

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VCFS 259
                 S+ +TISAG+ +       S   Y+ AD ALY +K  GRNRV VC S
Sbjct: 558 ------SLTVTISAGVTDLTFDSNRS---YKCADIALYESKTLGRNRVSVCHS 601


>gi|218780676|ref|YP_002431994.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762060|gb|ACL04526.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 309

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 87/170 (51%), Gaps = 12/170 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ +L+  D L+ L N   F  +L         Y   LS++ FDID FK  ND +GH  G
Sbjct: 136 KLQELAVTDGLTKLYNSRHFYETLDVEIRRARRYGRPLSLLLFDIDKFKNFNDTYGHIEG 195

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ--IN 209
           D+ +A ++  +           R GGEEF      + E+EA  +    +++ E ++  ++
Sbjct: 196 DRALARIARAVQDCIRLTDTAFRYGGEEFTVLMPETDEEEALGVG---QRVCEEARDLVH 252

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              G  +H+TIS G+ +    E ++ ++ R D+A+Y AK++G N+V   S
Sbjct: 253 RVDGKDVHLTISVGVTQCIPGEDLADMVKRVDEAMYKAKRAGGNQVAALS 302


>gi|194447645|ref|YP_002048574.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194405949|gb|ACF66168.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
          Length = 354

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 118/250 (47%), Gaps = 20/250 (8%)

Query: 32  SIFFSIFIATVIFIANIFLFYI-GLTPF----------YGLEYILVENLSLVIISITISL 80
           S+   +FI ++ F ANI  F +  L P            GL  + +  L +V I+I   +
Sbjct: 104 SLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWLNGNEQGLRILYLLALPMVGIAIQHVI 163

Query: 81  LLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFF 134
              Y   +  ++ +L      ++ LS +D L+GL N     + L +     S    ++  
Sbjct: 164 QKSYDNFAQQLMFKLLAERETLNGLSMLDPLTGLYNRRGLQNRLDTLQAPGSHEHYVLLL 223

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK  ND++GH +GD+ +  +S  +     +   V R GGEEF      +  Q+A  
Sbjct: 224 DIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTTAEPQQARA 283

Query: 195 LANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            A  +R+ + + +I      S+  ++T+S GIA    +  I   I +AD+ALY AK  GR
Sbjct: 284 TAERIRQEVYDLKIPHMFNESVATNVTVSIGIAPLTDRN-IGDAIEKADKALYEAKHLGR 342

Query: 253 NRVVCFSDIE 262
           N ++   D+ 
Sbjct: 343 NHILVSDDMR 352


>gi|114797892|ref|YP_760661.1| diguanylate cyclase [Hyphomonas neptunium ATCC 15444]
 gi|114738066|gb|ABI76191.1| diguanylate cyclase [Hyphomonas neptunium ATCC 15444]
          Length = 291

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 90/175 (51%), Gaps = 16/175 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ +++  D L+GLLN   FI       S +    +  +IV  D+D+FK++ND +GH  
Sbjct: 76  RRLEEMAWTDALTGLLNRRFFIHAAEEERSRMRRTKQSAAIVLIDLDHFKEVNDLYGHSG 135

Query: 151 GDKVI----AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GD V+    A    +L   F     +GR GGEEF       S++ A I+   LR+ IE +
Sbjct: 136 GDLVLKEIAAIAHSELRGPFDR---LGRWGGEEFVVLLSCVSKEHAMIVCERLRRRIEAA 192

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            I +     + +T S G+     + P++  I  AD ALY  K+ GRN+V+ F D+
Sbjct: 193 TIFVGDK-EVSVTASFGLCMMSPETPLNAAIDCADGALYEVKRLGRNKVL-FRDV 245


>gi|113969555|ref|YP_733348.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113884239|gb|ABI38291.1| diguanylate cyclase [Shewanella sp. MR-4]
          Length = 578

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 99/200 (49%), Gaps = 12/200 (6%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYN 126
           + IT +L L  +  S L+ L     ++  ++  D L+G  N     S +         +N
Sbjct: 376 MPITDNLELQQMVSS-LETLKTYAAQVKAMAETDGLTGCYNRRYLDSQIKKELSYANDHN 434

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAAL 185
             LS+V FDID FK+ ND +GH  GD+ +  + D    +   P   + R GGEEF     
Sbjct: 435 MPLSVVMFDIDNFKEFNDKYGHVAGDQCLKQVVDAAKSILQRPTDILARYGGEEFTLLLP 494

Query: 186 GSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQ 242
            S  ++A  +A  LR+ I+E +  + SS  S  +TIS G+A  +       + +I  AD+
Sbjct: 495 SSHCEDAYRIAERLRETIMELAIPHQSSSHSGVVTISLGVACWQPAQSLDANLVISDADE 554

Query: 243 ALYVAKKSGRNRVVCFSDIE 262
           ALY AK++GRNR +     E
Sbjct: 555 ALYQAKQAGRNRTIALRHPE 574


>gi|296238978|gb|ADH01501.1| diguanylate cyclase [Pseudomonas sp. 2663]
          Length = 467

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 8/176 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYN-EKLSIVFFDIDYFKQI 142
           L+EL  +  ++  ++  D L+G  N   FI  +        +N    S++  D+D+FK I
Sbjct: 291 LQELQRTNEKLEHMAATDPLTGAANRRQFIDRVEAEIARAKHNGAPFSLLALDLDHFKII 350

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND++GH  GD+V+     +          V R+GGEEF      ++   A  +   +R  
Sbjct: 351 NDSYGHQAGDRVLQRFVTKCRDAIRPFDGVARVGGEEFMVLLPQAALDTARSIGERIRAA 410

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           I  +      G  I +T+S G++E     E I  I+ +AD+ LY AK  GRNRVV 
Sbjct: 411 IAGTPFEADIGQPIEVTVSIGVSEFGRDGETIDAILRKADERLYHAKHQGRNRVVA 466


>gi|218709190|ref|YP_002416811.1| GGDEF family protein [Vibrio splendidus LGP32]
 gi|218322209|emb|CAV18323.1| GGDEF family protein [Vibrio splendidus LGP32]
          Length = 431

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 90/166 (54%), Gaps = 18/166 (10%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDK 153
           S+ +  D L+G+LN  A    L   ++       KLS+++ DIDYFK +ND +GH +GD 
Sbjct: 271 SEKAHRDELTGVLNRHAIRDWLKMQSQQVKQGHGKLSMLYLDIDYFKSVNDKYGHLMGDH 330

Query: 154 VIAFLSDQLVV---VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           ++   S  +VV   +  T   V R GGEEF      +   EA   A  +R ++  SQ   
Sbjct: 331 ILREFS--MVVGSSISATDKLV-RWGGEEFIVFCPETEAGEAQRKAEKIRLLV--SQHLW 385

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             G S  +T S GIAE   +E ++  I RAD+ALY AK SGRN+V+
Sbjct: 386 IHGDS--LTCSIGIAE-MKQERVTETIARADEALYQAKHSGRNQVI 428


>gi|212633447|ref|YP_002309972.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212554931|gb|ACJ27385.1| GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 322

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 78/162 (48%), Gaps = 15/162 (9%)

Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS+ID L+ L N   +   +         Y ++ ++V  DID FK IND +GH  GDKVI
Sbjct: 155 LSQIDGLTQLYNRRHWQLCMQKEFDRNSRYGDETTLVMLDIDNFKLINDTYGHQAGDKVI 214

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +S  +          GR GGEEF      +    A   A  LRK +E S+  +     
Sbjct: 215 QNVSHLIKKSLRETDCAGRYGGEEFGVVLANTPAANALFFAERLRKKVEQSET-VFDEQI 273

Query: 216 IHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRN 253
           I +TIS GI   C  +P        +  ADQALY AK+SGRN
Sbjct: 274 IKVTISIGI---CDIQPEVLTSEAWLCLADQALYQAKESGRN 312


>gi|119490770|ref|ZP_01623102.1| PleD-like protein [Lyngbya sp. PCC 8106]
 gi|119453754|gb|EAW34912.1| PleD-like protein [Lyngbya sp. PCC 8106]
          Length = 1252

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 57/165 (34%), Positives = 81/165 (49%), Gaps = 12/165 (7%)

Query: 107  DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
            D L+GL N      SL     +       + IV  DID+FK+ ND FGH  GD+V+  ++
Sbjct: 1089 DALTGLFNRRYLEESLEQEIHRARRNHYSVGIVMIDIDHFKRFNDQFGHDAGDEVLKTVA 1148

Query: 160  DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
              L     +     R GGEE       +S  +    +  +R +IE+ Q++  +     IT
Sbjct: 1149 RLLQGSIRSSDIACRYGGEELTLILPEASLSDTQARSEQIRYMIEHLQLHYENQSLGSIT 1208

Query: 220  ISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             S G+A  C   H E +  ++  AD ALY AK  GRNRVVC +DI
Sbjct: 1209 ASFGVA--CFPEHGETLEAVLRIADTALYQAKALGRNRVVCATDI 1251


>gi|90406947|ref|ZP_01215138.1| GGDEF family protein [Psychromonas sp. CNPT3]
 gi|90311989|gb|EAS40083.1| GGDEF family protein [Psychromonas sp. CNPT3]
          Length = 339

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 85/156 (54%), Gaps = 6/156 (3%)

Query: 107 DCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+GLLN  AF + L ++     + L ++  DID+FK+ ND +GH +GD+V+  +  + 
Sbjct: 182 DSLTGLLNRYAFDTELSTFLSTKADGLCLILADIDHFKKFNDQWGHLLGDQVLKAVGRKF 241

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITI 220
                      R GGEEF      ++ + A   A  LR++IE   + +  SG  I +I+ 
Sbjct: 242 NESMRDGTTAYRFGGEEFVILLPKTNLRLARHFAESLRRLIEKLNLKDKRSGQMIDNISA 301

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S G+ E    E +++ I RAD  LY AK+ GRNRV+
Sbjct: 302 SFGVVEFQKGESLTSFIARADTFLYEAKRLGRNRVL 337


>gi|261251755|ref|ZP_05944329.1| hypothetical protein VIA_001776 [Vibrio orientalis CIP 102891]
 gi|260938628|gb|EEX94616.1| hypothetical protein VIA_001776 [Vibrio orientalis CIP 102891]
          Length = 588

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 81/160 (50%), Gaps = 7/160 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            +L   D ++ L N       L  +   E + +   DID+FK++ND+ GH VGD+VI   
Sbjct: 426 KKLRSKDVMTHLDNKLTLREKLDKHIDKEDVYLAIIDIDHFKRVNDSLGHLVGDQVIIHT 485

Query: 159 SDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
           +D +   F  P  + V R GGEEF      + E +A       R ++E S++     P +
Sbjct: 486 ADLMKKCFPKPNSLSVARFGGEEFCVLFRANDENDAYEQCEMFRHLVEKSKLVCDDVP-V 544

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             T+S GI      + IS  + RAD+ALY AK  GRN+VV
Sbjct: 545 QYTVSIGITLNRDSQHIS--VGRADKALYQAKGLGRNQVV 582


>gi|153824489|ref|ZP_01977156.1| sensory box/GGDEF family protein [Vibrio cholerae MZO-2]
 gi|149742043|gb|EDM56072.1| sensory box/GGDEF family protein [Vibrio cholerae MZO-2]
          Length = 642

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 18/174 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS--IVFFDIDYFKQINDNFGH 148
           NR+ +LS  D L+ L N   F  ++         Y ++    +   DID+FK+IND FGH
Sbjct: 473 NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGH 532

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+  ++  +        F+ R+GGEEFA     +S +EA  + N +R       +
Sbjct: 533 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVR-------L 585

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +I+S     +T+S G+ + C     S    RAD ALY +K SGRN++   + +E
Sbjct: 586 HIASLHDQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTTME 637


>gi|56752291|ref|YP_172992.1| hypothetical protein syc2282_c [Synechococcus elongatus PCC 6301]
 gi|56687250|dbj|BAD80472.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 1037

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 11/172 (6%)

Query: 98   NRISQLSRIDCLSGLLNHSAFISSLGS---------YNEKLSIVFFDIDYFKQINDNFGH 148
             ++ Q +  D L+G+LN   FI+   +          +  LS+V  DID+FK IND++GH
Sbjct: 859  QKLQQQATTDALTGILNRRQFITLAQAELNRIYRIQRDTSLSLVIIDIDHFKTINDSYGH 918

Query: 149  PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             VGD+V+   ++             RLGG+EF      ++ ++A  + + +R+++    +
Sbjct: 919  TVGDQVLILWTNICQQNIREVDIFARLGGDEFVLMLPETNGKQAYQVMDRIRQLVIQQSL 978

Query: 209  NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++    +I ITIS GIA    +   +   + RAD+ALY AK+ GR+R++   
Sbjct: 979  HLPQ-QAIAITISVGIAVWTPEILTLDQFLERADRALYQAKQQGRDRIILLD 1029


>gi|325284734|ref|YP_004264197.1| diguanylate cyclase [Deinococcus proteolyticus MRP]
 gi|324316223|gb|ADY27337.1| diguanylate cyclase [Deinococcus proteolyticus MRP]
          Length = 369

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 111/239 (46%), Gaps = 30/239 (12%)

Query: 47  NIFLFYIGLTPFYGLEYILVEN---------LSLVIISITISLLLGYISGSILKELFISY 97
            IFL  + L P  GL  +++ N           L+I+++   L++  +    +K   I  
Sbjct: 133 GIFLGLVSLAP-NGLPLVMLPNGMQLLQQVYPPLLILNVAAFLIVALVLRDRIK--LIKL 189

Query: 98  NRISQL-SRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           N + Q  +R D LSGL N   F   L +      ++  DID+FK+IND +GH VGD+VI 
Sbjct: 190 NAMFQRQARQDALSGLFNRRQFDLDLLALRTGDLLLMVDIDHFKRINDTYGHAVGDQVIT 249

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFA----AAALGSSEQEAAILANDLRKIIENSQINISS 212
            + + L           R GGEEF        +G+ E    ++A  +R  IE + +++ S
Sbjct: 250 AVGELLRSNLRASDSAYRYGGEEFVLLVHQPQIGTPE----LIAERIRDHIEQTPLSVPS 305

Query: 213 ------GP---SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
                  P   ++H+T S G A           +  ADQALY AK+ GRNR V   + +
Sbjct: 306 LNGLQGDPATFTLHLTASLGGARHMAGTDPQHTLALADQALYQAKQGGRNRWVLHPEPQ 364


>gi|320156603|ref|YP_004188982.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
 gi|319931915|gb|ADV86779.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
          Length = 443

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 90/169 (53%), Gaps = 26/169 (15%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++L+  D L+G +N  A  + L           E+LS+++ D+D FK++ND +GH +GD 
Sbjct: 273 AELAHRDALTGAMNRHAVRTWLEKKARTVRWGQEQLSVLYLDLDKFKRVNDRYGHQMGDD 332

Query: 154 VIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           ++     + V+V  + +  G    R GGEEF      ++ Q+A   A  +RK       N
Sbjct: 333 ILR----EFVLVVASSLEEGERLVRWGGEEFIVFLPETTLQQAVEKAEMIRK-------N 381

Query: 210 ISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S+   +H   +T S G+A+   +E ++  + RAD ALY AK  GRNRV
Sbjct: 382 VSNHLWVHGGMLTCSIGVAQ-MQEERVTEFLARADDALYQAKHRGRNRV 429


>gi|302186094|ref|ZP_07262767.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 533

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 115/255 (45%), Gaps = 29/255 (11%)

Query: 23  SPHTFMIYFSIF-----FSIFIATVIF---IANIFLFYIGLTPFYGLEYILVENLSLVII 74
           +PH    Y         FSIF+  V +   + ++ +  +GL   Y  ++   E    V+ 
Sbjct: 6   TPHMVRKYLYTLLWFYVFSIFLFAVAWEFELESVAMAAMGLP--YDQDFESAERWRFVLT 63

Query: 75  SI---TISLLLGYIS-GSILKELFISYNRI-------SQLSRIDCLSGLLN----HSAFI 119
           S     +S+++ +I    +++ L  SYN +         L+R D LSGLLN    H   +
Sbjct: 64  STGFAVLSMIVPFILLKRLMQRLHRSYNDLLESQALSESLARHDPLSGLLNRRVFHEQLV 123

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGE 178
           + L     + ++   D+D FK IND  GH  GD  I  +++ L     G    V RLGG+
Sbjct: 124 ARLQQPATQTAVFLIDLDKFKLINDTHGHAAGDAAICAVAESLRDATVGWQASVARLGGD 183

Query: 179 EFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EF  A  G  S  E A LA  +   I  S + +  G +   T+ A IA     +P   ++
Sbjct: 184 EFGLAVSGDFSHAELAPLAESILAKIAASSVGL-PGVAFSATLGAAIAPMDSSDP-DILL 241

Query: 238 YRADQALYVAKKSGR 252
            RAD A+Y  K  GR
Sbjct: 242 QRADSAMYRGKTGGR 256


>gi|153828167|ref|ZP_01980834.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|148876409|gb|EDL74544.1| GGDEF family protein [Vibrio cholerae 623-39]
          Length = 489

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 12/188 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSI 131
           + ++L+  +++G +L  L   ++R   +QL+  D ++GLLN     S L    +++ L+I
Sbjct: 306 LVVALVYLFLTG-VLIYLNTRWDRQHYAQLAARDPMTGLLNRRGMESFLKGKRHSQYLAI 364

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQ 190
              DID FKQIND +GH +GD+VI ++ +Q+     +   V R GGEEF         EQ
Sbjct: 365 AVLDIDDFKQINDAYGHDMGDRVICYIGEQIENHIRSSDAVARFGGEEFVVYVTAKEKEQ 424

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAK 248
              I+      +   S + +  G     T+S GI   E         +   AD+ LYVAK
Sbjct: 425 ITRIMQRIFDAVCRESPLILEPG----FTVSGGIEVVESTTDRSFEDLFKAADEKLYVAK 480

Query: 249 KSGRNRVV 256
            SG+N++V
Sbjct: 481 TSGKNQLV 488


>gi|123443561|ref|YP_001007534.1| hypothetical protein YE3362 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090522|emb|CAL13391.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 414

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 73/134 (54%), Gaps = 6/134 (4%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           Y +  S++  D+D+FK IND  GH  GD+V+ FL+  L  +      V R GGEEF    
Sbjct: 285 YGQNFSLILLDVDHFKNINDQLGHHKGDEVLIFLARTLESIIRECDIVFRWGGEEFTILL 344

Query: 185 LGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
             ++ + A  LA  +R+ I+   Q N+       +T+S G+A+    E   ++  R D+A
Sbjct: 345 PSTNLKGALQLAESIRETIQMICQPNLP-----QLTVSIGVAQHQVGEDTDSLFKRMDEA 399

Query: 244 LYVAKKSGRNRVVC 257
           LY AK SGRNRV+ 
Sbjct: 400 LYRAKASGRNRVLA 413


>gi|73538785|ref|YP_299152.1| GGDEF [Ralstonia eutropha JMP134]
 gi|72122122|gb|AAZ64308.1| GGDEF [Ralstonia eutropha JMP134]
          Length = 413

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 93/190 (48%), Gaps = 18/190 (9%)

Query: 78  ISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129
           I++LLG    +++  E  I+ N     +R+D L+GLLN  A        ++      + L
Sbjct: 201 IAVLLGLFGFTVMAMEQIIANNESG--ARVDALTGLLNRGALDMSALSLVARWQRDGQSL 258

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S +  DID+FKQ+ND FGH  GD V+  ++  L          GR GGEEF      + E
Sbjct: 259 SCLVIDIDHFKQVNDTFGHHAGDAVLREVAQALDNSRRASDVAGRYGGEEFCILCPHTDE 318

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-----ADQAL 244
            +A  LAN   +I+   +     G     ++S G+A+         +++R     AD+AL
Sbjct: 319 HQATALAN---RILRKVRAIPLPGKECFASVSIGVAQLHGATGSKELLWRTLFADADRAL 375

Query: 245 YVAKKSGRNR 254
           Y AK+ GR+R
Sbjct: 376 YQAKQQGRDR 385


>gi|114562205|ref|YP_749718.1| diguanylate cyclase/phosphodiesterase [Shewanella frigidimarina NCIMB
            400]
 gi|114333498|gb|ABI70880.1| diguanylate cyclase/phosphodiesterase [Shewanella frigidimarina NCIMB
            400]
          Length = 1276

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 67/209 (32%), Positives = 106/209 (50%), Gaps = 24/209 (11%)

Query: 63   YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
            Y L+ + +++I+   I +L G      +KEL       S+ +  D L+GL N   F   L
Sbjct: 806  YALIASGTIIIL---IMILFGLSRIKQMKEL-------SRRANFDSLTGLANRFHFNQQL 855

Query: 123  G-----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                   YN   ++VF D+D+FK++ND+ GH VGD++I  +  +L         + RLGG
Sbjct: 856  SLLMSNPYNTA-AVVFIDLDHFKEVNDSMGHDVGDELIIQVGKRLQHCLSQQDVLARLGG 914

Query: 178  EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH---ITISAGIAERCHKE--- 231
            +EF  A +   EQ AA +  DL  IIE  +  ++ G  I+   +  SA I   C  +   
Sbjct: 915  DEF--ALIIPYEQVAADVNRDLVNIIERVRQTLNKGYQINQYWLNSSASIGVACFPDDGK 972

Query: 232  PISTIIYRADQALYVAKKSGRNRVVCFSD 260
               T++  AD A+Y AK++GRN    F++
Sbjct: 973  DAKTLLKHADTAMYAAKQNGRNGSYFFNE 1001


>gi|326796818|ref|YP_004314638.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326547582|gb|ADZ92802.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 364

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 10/162 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+  ++  D L+GL N       + S+    E  S+   DID FK INDNFGH  GD V+
Sbjct: 207 RLKDMAERDPLTGLQNRLVLEKEIRSHIQSEEPFSLALIDIDRFKAINDNFGHNYGDHVL 266

Query: 156 AFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
              S+ L     +   +G R GGEEF     G+ +         L ++   +  N+  GP
Sbjct: 267 CAFSELLKDTAKSYAGLGIRQGGEEFILFISGTIDPTFNATVELLNRL---ASANLEHGP 323

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              I+ SAG+ E   +E   T++ RAD  +Y AK+ GRNRV+
Sbjct: 324 ---ISFSAGVVEWDDREDQITLLKRADDLMYAAKEQGRNRVL 362


>gi|315181222|gb|ADT88136.1| sensory box/ggdef family protein [Vibrio furnissii NCTC 11218]
          Length = 606

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 87/173 (50%), Gaps = 21/173 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS---------YNEKLSIVFFDIDYFKQINDNFGH 148
           N++ +LS  D L+ L N   F   L +         +N    +V  DID+FK+IND  GH
Sbjct: 439 NQLRELSEKDSLTHLWNRRKFEQELQTQTQLVERYAHNHDACLVLIDIDFFKRINDEQGH 498

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+VI  ++  L     +  F+ R+GGEEFA     ++  EA  + + LR  +   Q 
Sbjct: 499 DQGDRVIIQVAQILTHQLRSTDFIARIGGEEFAVIMPHTAIDEAHRVVDRLRAAVAIDQ- 557

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VCFS 259
                 S+ +TISAG+ +       S   Y+ AD ALY +K  GRNRV VC S
Sbjct: 558 ------SLTVTISAGVTDLTFDSNRS---YKCADIALYESKTLGRNRVSVCHS 601


>gi|331647549|ref|ZP_08348641.1| cellulose synthesis regulatory protein [Escherichia coli M605]
 gi|330911761|gb|EGH40271.1| hypothetical protein ECAA86_02120 [Escherichia coli AA86]
 gi|331043273|gb|EGI15411.1| cellulose synthesis regulatory protein [Escherichia coli M605]
          Length = 558

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 9/185 (4%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           LL  Y+   ++  +++  + +   +  D L+ L N  A             ++    S++
Sbjct: 368 LLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAKLCQTHQHPFSVI 427

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK IND FGH VGD+V++  +  +          GR+GGEEF     G++  +A
Sbjct: 428 QVDLDHFKAINDRFGHQVGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGANLTQA 487

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKS 250
           A +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+AK++
Sbjct: 488 AEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQA 547

Query: 251 GRNRV 255
           GRNRV
Sbjct: 548 GRNRV 552


>gi|288871273|ref|ZP_06117056.2| sensory box/response regulator [Clostridium hathewayi DSM 13479]
 gi|288864046|gb|EFC96344.1| sensory box/response regulator [Clostridium hathewayi DSM 13479]
          Length = 363

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 13/178 (7%)

Query: 90  LKELFISYNRISQL---SRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIN 143
           L ++     R  QL   S  D L+G+ N +AF   +        + S+   DID FK +N
Sbjct: 192 LDDISKQKEREEQLLFQSTRDGLTGIYNKTAFEYMMEETLKRGSRGSLYMIDIDNFKDVN 251

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKI 202
           D +GHP GD+++    + L  +F     +GR+GG+EF   +  G ++ +A  L N     
Sbjct: 252 DQYGHPAGDRILVKTGELLREIFRDSDLIGRVGGDEFVVYSESGDTKMKALRLLNGTADF 311

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +  ++ IS   SI I  S G  +  ++E  S    RADQA+Y AK+ G+NR+  + +
Sbjct: 312 SKEGELRISV--SIGIASSTGNPDEEYQELFS----RADQAMYRAKQEGKNRIAWYEE 363


>gi|281179017|dbj|BAI55347.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 569

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 9/185 (4%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           LL  Y+   ++  +++  + +   +  D L+ L N  A             ++    S++
Sbjct: 379 LLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAKLCQTHQHPFSVI 438

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK IND FGH VGD+V++  +  +          GR+GGEEF     G++  +A
Sbjct: 439 QVDLDHFKAINDRFGHQVGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGANLTQA 498

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKS 250
           A +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+AK++
Sbjct: 499 AEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQA 558

Query: 251 GRNRV 255
           GRNRV
Sbjct: 559 GRNRV 563


>gi|218676573|ref|YP_002395392.1| Similar to sensory box/GGDEF family protein [Vibrio splendidus
           LGP32]
 gi|218324841|emb|CAV26570.1| Similar to sensory box/GGDEF family protein [Vibrio splendidus
           LGP32]
          Length = 634

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 83/175 (47%), Gaps = 20/175 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSY--NEKLSIVFFDIDYFKQINDNFGH 148
           N++  LS  D LSG  N   F        S +  Y   E+  +   DID+FK+IND FGH
Sbjct: 465 NKLRNLSEKDALSGCWNRRKFDLELRDECSRVSRYPTREQSCLAILDIDHFKRINDRFGH 524

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GDK I  ++  L        FV R+GGEEF      ++ +EA  + N LR  I     
Sbjct: 525 DYGDKAIQIVAQVLQRECRDTDFVARIGGEEFGVILPHTTPKEADYVLNRLRIAISIEFD 584

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDIE 262
           N+       +TIS GI      EP   + Y+ AD ALY AK  GRN V  F D E
Sbjct: 585 NV-------VTISGGIT-NLTSEP--ALNYKCADLALYEAKAVGRNNVCLFLDSE 629


>gi|197119468|ref|YP_002139895.1| response receiver-modulated diguanylate cyclase [Geobacter
           bemidjiensis Bem]
 gi|197088828|gb|ACH40099.1| response receiver-modulated diguanylate cyclase [Geobacter
           bemidjiensis Bem]
          Length = 458

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           YN    L  ID L+GL N+          +     Y   LS++F DID FK +ND FGH 
Sbjct: 282 YNFAKDLLYIDELTGLYNYRYLDVVLERELKRSERYGSNLSVLFLDIDLFKSVNDTFGHL 341

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +G +V+  +   L         V R GG+E+    + +    AAI+A  +RK++E    +
Sbjct: 342 IGSRVLREIGSLLRKSVRDVDAVIRYGGDEYTIVLVETGLDGAAIVAERIRKMVEAHTFS 401

Query: 210 ISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNR 254
            + G SI +T+S G A  C  +  ST   ++  ADQA+Y  K +G+N+
Sbjct: 402 KADGLSIKLTVSLGYA--CSPDDASTKTELLEMADQAMYRGKAAGKNK 447


>gi|86147225|ref|ZP_01065540.1| hypothetical protein MED222_17708 [Vibrio sp. MED222]
 gi|85834940|gb|EAQ53083.1| hypothetical protein MED222_17708 [Vibrio sp. MED222]
          Length = 471

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 98/202 (48%), Gaps = 19/202 (9%)

Query: 69  LSLVIISITISLLLGYISGSILKELFIS--YNRISQLSRIDCLSGLLNHSAFISSLGSYN 126
           L L  + + I L L +IS   L   +    + R+  L+ +D L+GL N   F + L + N
Sbjct: 269 LELERVQLLILLALYFISALWLWRFYTKQEHKRLKNLAMLDPLTGLYNRRGFEARLLNQN 328

Query: 127 EK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           E+  + +  FDID FK +ND +GH VGD+VI  ++  ++        V R GGEEF  A 
Sbjct: 329 EEPIIGVGVFDIDDFKVVNDQYGHKVGDEVICHVAQLMLNSVRQKDIVARFGGEEFVVAI 388

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG-----------IAERCHKEPI 233
            G S +  + +   ++  I       ++G  I+I++S G           I      + I
Sbjct: 389 TGESSELLSSIFERIQNDISLQSYRCATGDKINISVSGGATLYSLFKFDSIGHLWENQSI 448

Query: 234 STIIYRADQALYVAKKSGRNRV 255
            +    +D+ LY AK +G+N+V
Sbjct: 449 RS----SDEQLYKAKAAGKNQV 466


>gi|296131952|ref|YP_003639199.1| diguanylate cyclase [Thermincola sp. JR]
 gi|296030530|gb|ADG81298.1| diguanylate cyclase [Thermincola potens JR]
          Length = 222

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 104/220 (47%), Gaps = 21/220 (9%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           F   ++  A +FL  I    F+   Y L +   L +    I  ++  I G ++K      
Sbjct: 8   FAPAILLSAGLFLLTI---TFFADRYYLGQQGYLWLPMAIIQTVISTICGILIK------ 58

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVI 155
            R+++ +  D L+GL N   F + L     K  +S++  D+D FK IND +GH VGD+V+
Sbjct: 59  -RLNREANTDALTGLHNRKYFYTKLSELKTKGPISLLLIDLDDFKSINDTYGHIVGDQVL 117

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN---SQINISS 212
              ++ L         + R GGEEFA     +  QEA  +A+ +R  +EN   S  NI+ 
Sbjct: 118 QQFAEILRRNTRKDDVIARWGGEEFAVILPQTDTQEAIKVASRIRTAVENHLFSYENITC 177

Query: 213 GPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKS 250
                IT+S GI     K    I   +  AD+ALY AK+ 
Sbjct: 178 ----RITVSVGITSTREKADTGIEQFVKVADEALYRAKEK 213


>gi|145589357|ref|YP_001155954.1| diguanylate cyclase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047763|gb|ABP34390.1| diguanylate cyclase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 274

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 76/142 (53%), Gaps = 8/142 (5%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           N  ++ +  DID+FK++ND +GHP GD V+  L+             GR+GGEEF     
Sbjct: 132 NIPVAFLMLDIDHFKKVNDQYGHPAGDLVLQSLTKYCQGELRVVDIFGRVGGEEFLIVLP 191

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--------ERCHKEPISTII 237
            SSE  A  +A  LRK I +S   +  G  + IT+S GIA        E   K  +++  
Sbjct: 192 ESSEALAFDVAERLRKKIASSVAVVVDGHEVFITVSIGIAIFDPVLNGEIRPKVILNSGY 251

Query: 238 YRADQALYVAKKSGRNRVVCFS 259
            RAD+ALY+AK +GRNR   +S
Sbjct: 252 KRADEALYLAKSNGRNRTESWS 273


>gi|254448481|ref|ZP_05061941.1| diguanylate cyclase [gamma proteobacterium HTCC5015]
 gi|198261864|gb|EDY86149.1| diguanylate cyclase [gamma proteobacterium HTCC5015]
          Length = 595

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 82/168 (48%), Gaps = 11/168 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
            ++ +LS  D L+GL N  +    L    ++       LS +  DID FK  ND  GH V
Sbjct: 416 EKLEKLSNTDSLTGLNNRRSLDELLAMEVKRTCRTGAPLSAMMMDIDRFKAFNDTHGHQV 475

Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD  +  ++  +      P   VGR GGEEF      +    A I+A  +R  +EN    
Sbjct: 476 GDACLKAVAGVIASTAQRPSDVVGRYGGEEFCVLLPDTPLDGAQIIAERIRAAVENLDFT 535

Query: 210 ISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + SG  + +TIS G++E   C  +    ++  AD+ALY AK +GRN V
Sbjct: 536 V-SGQRVPVTISIGVSELTYCASDSGKALVEAADEALYSAKSAGRNCV 582


>gi|145297797|ref|YP_001140638.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850569|gb|ABO88890.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 626

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 91/170 (53%), Gaps = 15/170 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHP 149
            ++ QL+  D L+G+ N    I + G           + L ++  DID+FKQ+ND  GH 
Sbjct: 458 RKLRQLAMTDELTGIHNRRQ-IQAKGEVLFRQARDNGKPLCVLILDIDHFKQVNDTLGHH 516

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD+V+  ++  +         VGR GGEEF      +  +EA  +A  +R   E S+++
Sbjct: 517 MGDRVLTAVASCIGAQMRHLDRVGRHGGEEFLVLLPDTRMEEALEVAERIRH--EVSRLH 574

Query: 210 ISSGPSIH-ITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVV 256
           I   P  H + +S G AE C    E +  +I RAD+A+Y AK++GRN+V+
Sbjct: 575 IEEMPEGHPVHVSIGCAE-CSLLDESLGDLIKRADEAMYRAKQAGRNQVM 623


>gi|89902139|ref|YP_524610.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Rhodoferax ferrireducens T118]
 gi|89346876|gb|ABD71079.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 860

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I +L+  D L+ L N S         +S      E L+++F D+D+FK IND  GH VGD
Sbjct: 431 IQKLAYFDALTSLPNRSLLNDRIRHALSEADRRQESLALMFLDLDHFKNINDTLGHGVGD 490

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +++  L+ ++  V      V RLGG+EF      +  + AA +A   +K+++   + +  
Sbjct: 491 QLLVALAARMQSVVREQDTVARLGGDEFILLLPDTGSKGAARVA---QKLLQTISLPVQI 547

Query: 213 GP-SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           GP  + +T S GIA+     + + T+  RAD A+Y AK+SGRN
Sbjct: 548 GPHELTVTPSMGIAQYPRDGDDLETLSRRADIAMYRAKQSGRN 590


>gi|326626235|gb|EGE32580.1| Putative membrane protein [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 304

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 22/276 (7%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58
           F  IW  H      +   + F  +  S+   +FI ++ F ANI  F +  L P       
Sbjct: 28  FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 87

Query: 59  ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112
                GL  + +  L +V I+I   +   Y   +  ++ +L      ++ LS +D L+GL
Sbjct: 88  NGNEQGLRILYLLALPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 147

Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +     S    ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 148 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 207

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      +  Q+A   A  +R+ + + +I      S+  ++T+S GIA 
Sbjct: 208 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 267

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              +  I   I +AD+ALY AK  GRN ++   D+ 
Sbjct: 268 LTDRN-IGDAIEKADKALYEAKHLGRNHILVSDDMR 302


>gi|187923126|ref|YP_001894768.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
 gi|187714320|gb|ACD15544.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
          Length = 563

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 86/183 (46%), Gaps = 27/183 (14%)

Query: 90  LKELFISYNRI-SQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           L E   S N + S  +R D L+G L+   F+  L        + NE L +   D+D+FKQ
Sbjct: 372 LAEQLQSANTLLSAEARHDALTGALSRRYFLDLLRHEIERAHAGNEPLCMAIADLDHFKQ 431

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-- 199
           IND FGH  GD+ +    D           +GRLGGEEF             + A DL  
Sbjct: 432 INDRFGHAAGDRALEHFVDTCRAELRGADAIGRLGGEEFG----------LLLPATDLAG 481

Query: 200 -RKIIENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             +++E  ++ + + P      S+ +++S GI E    +    I+ RAD ALY AK  GR
Sbjct: 482 GHEVVERLRLRLKAMPSPKLPASVGLSVSIGITELSPDDLPERIMSRADMALYAAKSGGR 541

Query: 253 NRV 255
           +R 
Sbjct: 542 DRT 544


>gi|293396625|ref|ZP_06640901.1| cellulose synthesis regulatory protein [Serratia odorifera DSM
           4582]
 gi|291420889|gb|EFE94142.1| cellulose synthesis regulatory protein [Serratia odorifera DSM
           4582]
          Length = 561

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 13/161 (8%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N  AF       +    + N   S++  D+D+FK +ND +GH  GD+ +A  +
Sbjct: 394 DTLTRLYNRGAFFEKAYAIVEKCRAINRPYSVIQIDLDHFKFVNDCYGHLTGDRTLATTA 453

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             ++        VGR+GGEEF     G+++  A+ +A  +R  +E + I       I +T
Sbjct: 454 RLVLGAVRQHDVVGRVGGEEFCVILPGTTKSVASQIAERIRASLEGAMILTDDNLPIGVT 513

Query: 220 ISAGIAERCHKEPISTIIYR----ADQALYVAKKSGRNRVV 256
            S G+A  C  E  ST +      AD+ LY AKK+GRN+V+
Sbjct: 514 ASLGVA--CADEDGSTALNDLRMIADRRLYTAKKNGRNQVI 552


>gi|71908493|ref|YP_286080.1| GGDEF [Dechloromonas aromatica RCB]
 gi|71848114|gb|AAZ47610.1| GGDEF protein [Dechloromonas aromatica RCB]
          Length = 410

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 10/173 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           EL  +   I +LS ID L+G  N   F   +         Y   L+++F DID+FK+IND
Sbjct: 237 ELESALAAIHRLSTIDPLTGCFNRRLFNERIQEELDRAIRYQRALAVIFCDIDHFKRIND 296

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GH +GD+V+   ++     + G   +V R GGEEF      +S   A   A  LR  +
Sbjct: 297 TCGHLLGDQVLQEAAECFRRELRGHIDWVARYGGEEFVIVLPETSLPAAIATAERLRLAL 356

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             S + +   P + +T S G+ +    E +  ++ RAD  LY AK +GRN+ +
Sbjct: 357 TESMVALL--PGLTVTASFGVTQHVPGETVQELLQRADNQLYAAKAAGRNQTL 407


>gi|37680252|ref|NP_934861.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37198999|dbj|BAC94832.1| GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 439

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 14/183 (7%)

Query: 78  ISLLLGYISGS--ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIV 132
           I LLL    G+   L +L  +  ++ ++S +D LSGL N+  F++ +       E    V
Sbjct: 262 IPLLLAITVGACYYLYKLNKAQKKLKEISYLDPLSGL-NNRHFLAEVEKQQLPLEHYYAV 320

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK +ND +GH +GD+VI  ++  +        +  R+GGEEF       S  EA
Sbjct: 321 MLDIDHFKSVNDRYGHDIGDQVIRRVAKVVKSRIRVSDYAFRIGGEEFLLLVKTPSSNEA 380

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             +   +R+ +E    N++  P  H+T+S G      +  +   I  AD  LY AK++GR
Sbjct: 381 RQVCERIRQDVE----NMTQAP--HVTVSIGFT--ALQTQLDETIRIADSHLYDAKRNGR 432

Query: 253 NRV 255
           NRV
Sbjct: 433 NRV 435


>gi|84387083|ref|ZP_00990105.1| GGDEF family protein [Vibrio splendidus 12B01]
 gi|84377944|gb|EAP94805.1| GGDEF family protein [Vibrio splendidus 12B01]
          Length = 486

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 16/196 (8%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQ-------LSRIDCLSGLLNHSAFISSLGS- 124
           I+  TISLLL YI    ++E    Y  I +       L+  D L+ + N  AF   LG  
Sbjct: 292 IVGTTISLLLAYIVNLQIREKERLYRMIDERTEELRFLANHDSLTEIYNRRAFNKMLGQS 351

Query: 125 --YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
              ++  S++ FD+D FK+IND FGHP GD ++  +   + V   +   + R+GG+EF  
Sbjct: 352 IQRDKPFSLIVFDVDKFKEINDKFGHPAGDALLIHVIKVISVSLKSGDNLFRMGGDEF-- 409

Query: 183 AALGSSEQEAAILANDLRKIIEN-SQINIS-SGPSIHITISAGIAERCHKEPISTIIYRA 240
             + SS  E   L+  L  I+E  S+ +   SG  +  T+S G   R + E I  ++ + 
Sbjct: 410 -GIISSITEHDSLSRYLECILETVSESHCEHSGQLLSCTLSIGATIRTN-EDIEALLQKT 467

Query: 241 DQALYVAKKSGRNRVV 256
           D  LY++K +GRNRV 
Sbjct: 468 DSMLYLSKSNGRNRVT 483


>gi|113968797|ref|YP_732590.1| diguanylate cyclase with GAF sensor [Shewanella sp. MR-4]
 gi|113883481|gb|ABI37533.1| diguanylate cyclase with GAF sensor [Shewanella sp. MR-4]
          Length = 345

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 19/180 (10%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFF---DIDYFKQINDN 145
           L +    +  L+  D L+G  N   F    + ++ +++EK  + +F   DID+FK +ND 
Sbjct: 170 LRLQLKELEYLASTDHLTGAGNRRVFTQKILQAIETFHEKGQLFYFGLLDIDHFKMLNDQ 229

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVG-----RLGGEEFAAAALGSSEQEAAILANDLR 200
           FGH  GD V+     Q +V     M        R+GGEEFA      +E E     ND+R
Sbjct: 230 FGHTAGDYVL-----QKIVAISEAMMTSSAELFRIGGEEFAIIFPEQTEYEPMQFFNDIR 284

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           + I  + ++    P I +++S G       +    +++ R+D+ALY AK +GRNRVV F+
Sbjct: 285 EAIAKAALDFDGIP-ISVSVSIGFTTMSTADYAPESLLRRSDKALYQAKLAGRNRVVMFN 343


>gi|332992852|gb|AEF02907.1| GGDEF/GAF domain-containing protein [Alteromonas sp. SN2]
          Length = 496

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 92/176 (52%), Gaps = 11/176 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           +EL  +  ++++L+ ID L+G+ N   F  +L    E+       LS++F D+D+FK  N
Sbjct: 310 QELIEANAKLAKLANIDGLTGIANRRLFDDTLQRDIERSVLSKTPLSLLFIDVDHFKNYN 369

Query: 144 DNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD  +  +++ +     G    V R GGEEFA     ++   A  +A  +R+ 
Sbjct: 370 DCYGHVAGDDALISVAEIIKKTCIGNDDAVARYGGEEFAVIMPSTNLSAALKVAERIRRN 429

Query: 203 IENSQINIS-SGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRV 255
           IE + I    S  +  +T S G+A      P+  +  I +AD ALY+AK  GRNRV
Sbjct: 430 IEQAAIPFKLSAYNNRLTASLGVATMAFDHPVCPNEFIKQADAALYLAKSLGRNRV 485


>gi|229157628|ref|ZP_04285703.1| Sensory box/GGDEF family protein [Bacillus cereus ATCC 4342]
 gi|228625585|gb|EEK82337.1| Sensory box/GGDEF family protein [Bacillus cereus ATCC 4342]
          Length = 430

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 84/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ ID L+ + N   F   L +        NE ++++ FDID FK +ND +GH 
Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAVNDTYGHD 320

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      ++E+EA  +A  LR  IE  Q  
Sbjct: 321 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTAEKEAFQVAESLRFFIETKQF- 379

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             SG S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 380 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCVY 425


>gi|222149457|ref|YP_002550414.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221736440|gb|ACM37403.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 626

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 103/212 (48%), Gaps = 19/212 (8%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           LE ++    S  I S  +++     S  +L+E       + +L+  D L+ L N   F  
Sbjct: 415 LETVITRVRSFDISSGMVAVTRDVTSQRLLQE------ELDRLANTDELTQLSNKRHFNR 468

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF--GTPMF 171
            L S + +       LS++  D+D FK  ND +GH  GD  +  +S ++      GT + 
Sbjct: 469 QLKSLSAEARMVGTPLSLLVVDVDKFKLFNDTYGHLPGDNCLRKISTEIAAAIRPGTDL- 527

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAER--C 228
             R GGEE      G +  +A  +  ++R+ I   +I +  + P  H+T+S G+AE+   
Sbjct: 528 AARYGGEEIVILLPGKTASQAHQVGEEIRQRIAALEIIHQKNLPWGHVTVSIGVAEQSPA 587

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           H E    +  +AD+ LY AK SGRN+VV F +
Sbjct: 588 HDETDEALFVKADKCLYTAKNSGRNKVVSFDE 619


>gi|209552386|ref|YP_002284301.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209539498|gb|ACI59430.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 546

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 83/160 (51%), Gaps = 15/160 (9%)

Query: 106 IDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA----FL 158
           +D L+GL N     S    L S     SI   D+D+FK +NDNF H +GD+V++     L
Sbjct: 394 LDALTGLYNRKYLDSRFKELTSEKRPYSIAMLDVDHFKSVNDNFSHMIGDQVLSAIGTIL 453

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIH 217
            +QL +   T   + R GGEEF    L  + + AA +   LR  +E  Q N S     + 
Sbjct: 454 RNQLRI---TDQAI-RFGGEEF-VVLLAGTPRGAADVCERLRTAVE--QWNWSEICNGLR 506

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +TIS G+A        + I+  ADQ LY AKK+GRNRVV 
Sbjct: 507 VTISIGVANTLSASAPNEILAIADQNLYTAKKTGRNRVVA 546


>gi|163783656|ref|ZP_02178644.1| hypothetical protein HG1285_12732 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881061|gb|EDP74577.1| hypothetical protein HG1285_12732 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 336

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 99/188 (52%), Gaps = 14/188 (7%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFF 134
           L +I   I+KE  +   R+ + + ID L+GL N        +  I+    Y   +S++ F
Sbjct: 150 LAFIFSFIVKEE-LEKKRLLEKAIIDHLTGLYNRFYLEEAGAREIARAKRYGFPISLIMF 208

Query: 135 DIDYFKQINDNFGHPVGDKV-IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           D+D FKQ+ND +GH VGD+V + F S     V  T M V R GGEEF      +  +EA 
Sbjct: 209 DLDNFKQVNDTYGHQVGDRVLVKFASIVSSNVRSTDMPV-RYGGEEFVVLLPHTYPEEAV 267

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSG 251
            +A  +R+  E        G  + +T+SAGI+  C+    S   +I  AD+A+Y AK+ G
Sbjct: 268 KVAERIREEFEKFLFRF-EGEVMRLTVSAGIS-FCNSGECSLGELIQMADKAMYEAKEKG 325

Query: 252 RNRVVCFS 259
           +NR+  FS
Sbjct: 326 KNRIEVFS 333


>gi|158336078|ref|YP_001517252.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158306319|gb|ABW27936.1| diguanylate cyclase (GGDEF) [Acaryochloris marina MBIC11017]
          Length = 126

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 73/129 (56%), Gaps = 4/129 (3%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +++   DID+FK IND FGH  GD+V+  +S  L         V R+GGEEF     GS 
Sbjct: 1   MTLASLDIDHFKAINDAFGHATGDQVLRDISGLLKERLRRVDQVFRIGGEEFLLLFYGSD 60

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
            +   ++A +LR +I  SQ  +   P   +T+S G+A    KE  +T + R+D  LY AK
Sbjct: 61  TESGYLVAEELRHLI-GSQPFL---PDHSVTVSIGVATLHPKEDWTTWMQRSDDYLYRAK 116

Query: 249 KSGRNRVVC 257
            +GRN+V+C
Sbjct: 117 SAGRNQVMC 125


>gi|313496937|gb|ADR58303.1| Response regulator receiver modulated diguanylate cyclase
           [Pseudomonas putida BIRD-1]
          Length = 451

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 82/158 (51%), Gaps = 10/158 (6%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +  L           + LS    DID+FK+IND  GHP+GD+VI  L+
Sbjct: 292 DSLTGLYNHTHILQLLEDCSFRARREQQPLSFAMLDIDHFKKINDRHGHPMGDRVIKSLA 351

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218
             L        F+GR GGEEFA     ++   A  + +++R+    ++I   + P  +  
Sbjct: 352 LFLKQRLRKTDFIGRYGGEEFAIVMPNTALDAAHKVLDEIRRRF--AEILYPAQPRDLQC 409

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T SAG+ +        T+   AD+ALY AK +GRN VV
Sbjct: 410 TFSAGVVQLDEGLDALTMASAADEALYRAKHAGRNCVV 447


>gi|222149526|ref|YP_002550483.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221736508|gb|ACM37471.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 909

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 57/162 (35%), Positives = 81/162 (50%), Gaps = 10/162 (6%)

Query: 107 DCLSGLLN------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N      H A I  L    + ++++  D+D FK+IND  GH  GD ++   + 
Sbjct: 480 DPLTGLANRRFLDRHLAEIEDLRGNGKSVALLHIDLDRFKEINDTLGHAAGDAMLRHAAS 539

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSGPSIHIT 219
           Q+        F  R+GG+EF       S Q AA IL   L   I N  I+   G    ++
Sbjct: 540 QINAHMSPGDFAARIGGDEFVVVKHDESSQAAARILGETLIDAI-NQPIHW-EGQECRVS 597

Query: 220 ISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260
            S GIA+ C+  P +   +  AD ALY AK+ G+NR+  FSD
Sbjct: 598 ASIGIAQSCNNHPHLEQALINADIALYEAKRRGKNRLEFFSD 639


>gi|218962106|ref|YP_001741881.1| hypothetical protein CLOAM1846 [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730763|emb|CAO81675.1| hypothetical protein CLOAM1846 [Candidatus Cloacamonas
           acidaminovorans]
          Length = 578

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 88/180 (48%), Gaps = 24/180 (13%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y ++ +LS  D L+GL N      +L         +N  +     DID+FK +NDN+GH 
Sbjct: 396 YEKVGELSLTDSLTGLRNRRYLEGNLFQMVILAARHNVPVCFSMIDIDFFKLVNDNYGHL 455

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE----- 204
            GD V+  L+  L   F     V R GG+EF      S ++ +  +  DLR+ IE     
Sbjct: 456 AGDFVLKELARILNSEFRKSDVVIRYGGDEFLVILFDSDQRLSYSIMEDLRQKIEAYSFD 515

Query: 205 -NSQINISSGPSIHITISAGIAERCH--KEP--ISTIIYRADQALYVAKKSGRNRVVCFS 259
            N+QI       I  TIS GIA   H   +P  ++  I  ADQA YVAK +GRNRV  + 
Sbjct: 516 YNNQI-------ITFTISIGIACDFHISSQPKNLAKCIACADQACYVAKTNGRNRVELYQ 568


>gi|330967757|gb|EGH68017.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 355

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 114/237 (48%), Gaps = 21/237 (8%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLE-----YILVENLSLVIISITISLL 81
            +I  S    ++    +F++   L +I L+P  G++     Y+ +  +   + SI + ++
Sbjct: 103 MIILCSTLLVVYTRDYLFVS--VLSWIILSPAQGIDTDSAAYVFM--MLFFVSSIALGVV 158

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDY 138
           L + +   L+++    +R  +LS  D L+ +LN  A + +L  +   N     +  DID 
Sbjct: 159 LNHTNTRTLRKVLTLESRFRELSLTDDLTDILNRRALMLALDEHVANNSGSYFLMLDIDN 218

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND FGH  GD+V+  ++  L    G+  F GR+GGEEF      S E  A      
Sbjct: 219 FKTINDQFGHDAGDEVLRLMASCLQQTPGSLAF-GRMGGEEFGVILPVSGEPVACDYVLR 277

Query: 199 LRKIIENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           L   I  S       P++  +T SAG+A+       S ++  AD  +Y AK+ G++R
Sbjct: 278 LLDTIRRS-------PTVSPLTCSAGLADIDANSTSSQVLKTADVNMYQAKREGKDR 327


>gi|320105448|ref|YP_004181038.1| diguanylate cyclase with beta propeller sensor [Terriglobus saanensis
            SP1PR4]
 gi|319923969|gb|ADV81044.1| diguanylate cyclase with beta propeller sensor [Terriglobus saanensis
            SP1PR4]
          Length = 1050

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 8/169 (4%)

Query: 92   ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
            +L ++ + ++QL+  D L+ L N   FI+ L +         +  S++  DID+FK +ND
Sbjct: 867  KLQVANSLLNQLASRDSLTNLFNRRHFIALLDTELARSKRTAQTFSLLLLDIDHFKSVND 926

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             +GH  GD VI  ++ ++         + R GGEE+      ++  +A  LA  +   I 
Sbjct: 927  TYGHLAGDTVIQTIAARISTSLRATDTLARFGGEEYIVLLPNTAVPQATALALRILSAIA 986

Query: 205  NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            ++ I I  G  I+ ++S G AE   K   + ++ RAD ALY AK+ GRN
Sbjct: 987  STPIEI-EGFLINASVSIGCAEADIKGTTTMLLERADLALYAAKRGGRN 1034


>gi|193216167|ref|YP_001997366.1| diguanylate cyclase [Chloroherpeton thalassium ATCC 35110]
 gi|193089644|gb|ACF14919.1| diguanylate cyclase [Chloroherpeton thalassium ATCC 35110]
          Length = 437

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 109/249 (43%), Gaps = 18/249 (7%)

Query: 23  SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL 82
            P   + YF  +   ++A    ++      I L   +  EY + EN+      I    LL
Sbjct: 194 DPAKSLEYFEAYHKFYLAFDAELSVSKPLEIVLDTCHSKEYHISENVQRAYEEIKKYNLL 253

Query: 83  GYISGSILKELFISYNRISQLSRI---DCLSGLLNHSAFISSLG-------SYNEKLSIV 132
                   K +     RI  L R    D L+GL N       L         Y   L++V
Sbjct: 254 YAELSQQCKLVEEHKERIKTLERQIREDSLTGLQNRRYLDLQLSLEFERARRYGNNLTLV 313

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FKQIND F H +GDKV+  ++            + R GGEEF      +  + A
Sbjct: 314 MADIDHFKQINDRFSHLIGDKVLKEIAKIFRRRCRRIDIIARYGGEEFVLLLPMTDAENA 373

Query: 193 AILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            ++   +R  IEN   S+I+    P + +TIS GI++    E    ++  AD+ LY AK 
Sbjct: 374 YMVCERIRVAIENYHWSKIH----PELSVTISMGISDSLGIENNHDLLAAADKKLYEAKN 429

Query: 250 SGRNRVVCF 258
           SGRNR VC+
Sbjct: 430 SGRNR-VCY 437


>gi|87307282|ref|ZP_01089427.1| hypothetical protein DSM3645_17205 [Blastopirellula marina DSM
           3645]
 gi|87290022|gb|EAQ81911.1| hypothetical protein DSM3645_17205 [Blastopirellula marina DSM
           3645]
          Length = 336

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 16/157 (10%)

Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           SR D L+GL N  A   SL         Y+   ++  FD+D+FK++ND  GH  GD+V+ 
Sbjct: 131 SRTDPLTGLSNRRALDDSLENMIGMKSRYDFTFTLCIFDVDHFKRVNDQHGHLHGDRVLV 190

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +S+ +         V R GGEEF      +    A I A  LR          S+   +
Sbjct: 191 EVSNLIDNCVRETDIVTRYGGEEFVVLMPSTDVYGACIFAERLR---------TSAEAQL 241

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +TIS G+A+   ++   T++ RAD ALY AK +GRN
Sbjct: 242 GVTISGGLAQVRREDEARTLLARADAALYRAKANGRN 278


>gi|330861522|emb|CBX71732.1| hypothetical protein YEW_BX08280 [Yersinia enterocolitica W22703]
          Length = 439

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 11/171 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQIND 144
           K L    + ++  +  D L+GL N + F   L         NE ++++F D D FK+IND
Sbjct: 237 KHLTQENDSLAHRAAHDSLTGLANRAYFEGRLSRTLSDCKTNEHVAVLFLDGDRFKEIND 296

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKI 202
           N+GH  GD V+  ++D+L  +      V RLGG+EFA   A + +++ +  I+AN++ K 
Sbjct: 297 NYGHAAGDVVLTTIADRLRALLRESDLVARLGGDEFAILLAPIYNTD-DVLIIANNIIKS 355

Query: 203 IENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252
           +    I +  G  I  ++S G+A    H +    ++ RAD+A+Y AKK  R
Sbjct: 356 M-TQPITLPDGSEIITSLSIGVAIYPDHAQTPDELLQRADEAMYQAKKGFR 405


>gi|326424077|ref|NP_761617.2| GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|319999455|gb|AAO11144.2| GGDEF family protein [Vibrio vulnificus CMCP6]
          Length = 442

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 90/169 (53%), Gaps = 26/169 (15%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++L+  D L+G +N  A  + L           E+LS+++ D+D FK++ND +GH +GD 
Sbjct: 272 AELAHRDALTGAMNRHAVRTWLEKKARTVRWGQEQLSVLYLDLDKFKRVNDRYGHQMGDD 331

Query: 154 VIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           ++     + V+V  + +  G    R GGEEF      ++ Q+A   A  +RK       N
Sbjct: 332 ILR----EFVLVVASSLEEGERLVRWGGEEFIVFLPETTLQQAVEKAEMIRK-------N 380

Query: 210 ISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S+   +H   +T S G+A+   +E ++  + RAD ALY AK  GRNRV
Sbjct: 381 VSNHLWVHGGMLTCSIGVAQ-MQEERVTEFLARADDALYQAKHRGRNRV 428


>gi|323525235|ref|YP_004227388.1| diguanylate cyclase [Burkholderia sp. CCGE1001]
 gi|323382237|gb|ADX54328.1| diguanylate cyclase [Burkholderia sp. CCGE1001]
          Length = 563

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 87/185 (47%), Gaps = 31/185 (16%)

Query: 90  LKELFISYNRI-SQLSRIDCLSG---------LLNHSAFISSLGSYNEKLSIVFFDIDYF 139
           L E   S N + S  +R D L+G         LL H    + LG  N+ L +   D+D+F
Sbjct: 372 LAEQLQSANTLLSAEARHDALTGALSRRYFLDLLRHEIDRAHLG--NQPLCMAIADLDHF 429

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQIND FGH  GD+ +    D           +GRLGGEEF             + A DL
Sbjct: 430 KQINDRFGHAAGDRALEHFVDTCRAELRGADAIGRLGGEEFG----------LLLPATDL 479

Query: 200 ---RKIIENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
              R+++E  ++ + + P      S+ +++S GI E    +    I+ RAD ALY AK  
Sbjct: 480 AGGREVVERLRLRLKAVPSAQLPASVTLSVSIGITELSVDDLPERIMSRADTALYAAKTG 539

Query: 251 GRNRV 255
           GR+R 
Sbjct: 540 GRDRT 544


>gi|229529806|ref|ZP_04419196.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229333580|gb|EEN99066.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|327483809|gb|AEA78216.1| GGDEF family protein [Vibrio cholerae LMA3894-4]
          Length = 489

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 12/188 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSI 131
           + ++L+  +++G +L  L   ++R   +QL+  D ++GLLN     S L    +++ L+I
Sbjct: 306 LVVALVYLFLTG-VLIYLNTRWDRQHYAQLAARDPMTGLLNRRGMESFLKGKRHSQYLAI 364

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQ 190
              DID FKQIND +GH +GD+VI ++ +Q+     +   V R GGEEF         EQ
Sbjct: 365 AVLDIDDFKQINDAYGHDMGDRVICYIGEQIENHIRSSDAVARFGGEEFVVYVTAKEKEQ 424

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAK 248
              I+      +   S + +  G     T+S GI   E         +   AD+ LYVAK
Sbjct: 425 ITRIMQRIFDAVCRESPLILGPG----FTVSGGIEVVESTTDRSFEDLFKAADEKLYVAK 480

Query: 249 KSGRNRVV 256
            SG+N++V
Sbjct: 481 TSGKNQLV 488


>gi|332306120|ref|YP_004433971.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173449|gb|AEE22703.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 408

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 19/167 (11%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+G+ +  A +  + +   K  +V  DID+FK+ ND +GH VGD+V+  ++ +L  + 
Sbjct: 236 DELTGVPSRRALMQYVNTLGRKYVVVMADIDHFKKFNDTYGHDVGDEVLKLVASRLNRIG 295

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------------ 214
           G      R GGEEF       + Q+A      +R++I +  I +   P            
Sbjct: 296 GGGK-AFRFGGEEFIMIFPRKTPQQALPFVEQIRQLIADYPIALREKPRPKKAPKRGTGK 354

Query: 215 -----SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
                ++ IT S GIA+R  +    S I+ +AD ALY AKK+GRN V
Sbjct: 355 PNQGKTVKITASFGIAKRSSEFNQFSDIMKQADIALYAAKKAGRNCV 401


>gi|260768520|ref|ZP_05877454.1| GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260616550|gb|EEX41735.1| GGDEF family protein [Vibrio furnissii CIP 102972]
          Length = 280

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 101/213 (47%), Gaps = 16/213 (7%)

Query: 48  IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107
           +FLF+   +  Y L  ++V    L I+S+   L L +       E+   Y+R       D
Sbjct: 77  MFLFHQFHSKVYFLSGVVVGQNLLTIVSLGAMLSLFFYD-----EIEWHYHRAIH----D 127

Query: 108 CLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            L+G+ N   F+      L       +I   D+D+FKQ+ND+FGH VGD+ +  ++  + 
Sbjct: 128 ELTGIFNRRYFMEQAERRLKQAKAHYTIAIIDVDHFKQVNDSFGHDVGDRALEAIAQLMH 187

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
             F   + V R GGEEF     GS E E           + N  + I  G  + +T+S G
Sbjct: 188 RQFRHDL-VARYGGEEFVVLLAGSIE-ETRFKLERFNHEVANHAMEI-YGHHVDLTVSIG 244

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +A    ++ +   + +AD ALY AK  GRNR+V
Sbjct: 245 MASVASEQHLHQALKQADIALYDAKGKGRNRLV 277


>gi|126665177|ref|ZP_01736160.1| sensory box/GGDEF domain protein [Marinobacter sp. ELB17]
 gi|126630547|gb|EBA01162.1| sensory box/GGDEF domain protein [Marinobacter sp. ELB17]
          Length = 429

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 15/163 (9%)

Query: 102 QLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++ R D L+G L  +A        ++   GS    +SIV  DID+FKQ+ND +GH  GD 
Sbjct: 261 EMVRFDGLTGALTRTAGELALEKAYMQHRGS-KLPMSIVMADIDHFKQVNDRWGHAAGDI 319

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS-QINISS 212
           V+  ++  ++        V R GGEEF     G +  +  +LA   ++ ++N    N+  
Sbjct: 320 VLRAVTSTMIATLRANDTVIRWGGEEFLLIFGGCNLDQGLLLAERCQQAVQNKHHENVG- 378

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               ++T+S G+ E   +E ++ +I R D+ALY AK SGRN+ 
Sbjct: 379 ----YVTVSIGLGELQPEEALADLIERVDKALYSAKTSGRNQT 417


>gi|322832370|ref|YP_004212397.1| diguanylate cyclase [Rahnella sp. Y9602]
 gi|321167571|gb|ADW73270.1| diguanylate cyclase [Rahnella sp. Y9602]
          Length = 304

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 95/195 (48%), Gaps = 17/195 (8%)

Query: 66  VENLS----LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           +E+LS    +V +S  I  ++ Y++          Y+ +S  S  D L+ L N   F ++
Sbjct: 117 LEDLSKLAGMVCVSAGIYFIVRYVNNK--------YSDMSINSFRDELTRLPNRRYFKNA 168

Query: 122 LGSYNEKLSIVFF-DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           L   +     VF  DID+FK IND +GH +GD V+   S  L  +F   +   R+GGEEF
Sbjct: 169 LMDLDNVSVYVFLIDIDFFKNINDKYGHYIGDDVLRAFSLMLSELFKNNVIAARVGGEEF 228

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
           A     S  +EA ++A  +   +    IN      I  T+S G   +   E   ++  R 
Sbjct: 229 AVIVQTSVFEEARLMAEKILVHVRELVIN----DEIRFTVSIGAGIKKENESQESLFRRI 284

Query: 241 DQALYVAKKSGRNRV 255
           D ALY AK SGRNRV
Sbjct: 285 DIALYQAKHSGRNRV 299


>gi|256830365|ref|YP_003159093.1| diguanylate cyclase with beta propeller sensor [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579541|gb|ACU90677.1| diguanylate cyclase with beta propeller sensor [Desulfomicrobium
           baculatum DSM 4028]
          Length = 977

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 19/201 (9%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           L L +  +  SLLL  +  + +++     + +  L   D L+G+ N   F   L +    
Sbjct: 771 LFLALTFLISSLLLARLQTARIRK-----DMLENLVMQDPLTGVPNRRKFQEVLAAEKSR 825

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEF 180
               N ++S++  DIDYFK  ND FGH  GD  +  ++  L      P  FVGR GGEEF
Sbjct: 826 CKRSNHQISVLMIDIDYFKGFNDRFGHQAGDLALRSVAQTLNATLKRPEDFVGRYGGEEF 885

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEP--ISTII 237
                 ++   A  +A  +++ +  + I     P S  IT+S GI+    +    I + +
Sbjct: 886 VVVLPSTNRSGAERVAQKIQQALFLTNIPYPGSPLSDRITVSLGISTFSPQTDLHIDSGL 945

Query: 238 YRADQALYVAKKSGRNRVVCF 258
           + ADQALY AK++GRN   CF
Sbjct: 946 FSADQALYQAKRNGRN---CF 963


>gi|228967077|ref|ZP_04128113.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228792446|gb|EEM40012.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 415

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ +D L+ + N   F   L          +EK++I+ FDID FK +ND +GH 
Sbjct: 246 YQEQERLAMVDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTVNDTYGHD 305

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 306 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 364

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +G S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 365 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 410


>gi|218676505|ref|YP_002395324.1| GGDEF family protein [Vibrio splendidus LGP32]
 gi|218324773|emb|CAV26448.1| GGDEF family protein [Vibrio splendidus LGP32]
          Length = 438

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 75/156 (48%), Gaps = 10/156 (6%)

Query: 107 DCLSGLLNHSAFISS------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+G  N +  + +      L    + + I  FD+D+FKQIND  GH VGDKV+     
Sbjct: 284 DPLTGCRNRTEALDAFYDFEWLAQQGKTIHIALFDLDHFKQINDQHGHEVGDKVLIQFVA 343

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
                 G    + R GGEEF    L  +  +     N+L   I+ S        ++ +T 
Sbjct: 344 TANESLGEQYLLYRWGGEEFLLVCLEQTALQCNEAINNLYLAIDQS----VWPKALKVTT 399

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S G+ +    E I + I RAD+ALY AK +GRN+V 
Sbjct: 400 STGVTQLKQHESIRSAIKRADKALYQAKDNGRNQVA 435


>gi|89093127|ref|ZP_01166078.1| GGDEF domain protein [Oceanospirillum sp. MED92]
 gi|89082777|gb|EAR61998.1| GGDEF domain protein [Oceanospirillum sp. MED92]
          Length = 379

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 31/208 (14%)

Query: 76  ITISLLLGYISGSILKELFISYNRIS----------QLSRIDCLSGLLNHSAFISSLGSY 125
           I+  ++L + +  ++  LF+S + I+          +++ ID L+ +    A    L + 
Sbjct: 150 ISALIMLSWFNQPMISGLFVSASLIALAISVVQNSYRMAFIDELTSIPARRALQDKLSTL 209

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            +K ++   DID+FK+ ND +GH VGD+V+  ++ +L  V G      R GGEEF     
Sbjct: 210 GKKYTLAMCDIDHFKKFNDTYGHDVGDQVLKMVAAKLNQVSGGGKAY-RYGGEEFTLVFP 268

Query: 186 GSSEQEAAILANDLRKIIENSQINI--SSGPS-----------------IHITISAGIAE 226
           G +E EA      LR+ I N  ++I   + P                  + +TIS G  E
Sbjct: 269 GKNEAEALPYIEQLRETIANYPMHIRNQNRPDDNEQGQKMRSKEDDSEIVSVTISIGFCE 328

Query: 227 RCHKEP-ISTIIYRADQALYVAKKSGRN 253
           +  + P    +I +AD+ALY +KK+GRN
Sbjct: 329 KTAEIPDPHAVIKKADEALYTSKKNGRN 356


>gi|332160221|ref|YP_004296798.1| hypothetical protein YE105_C0597 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664451|gb|ADZ41095.1| hypothetical protein YE105_C0597 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 448

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 11/171 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQIND 144
           K L    + ++  +  D L+GL N + F   L         NE ++++F D D FK+IND
Sbjct: 246 KHLTQENDSLAHRAAHDSLTGLANRAYFEGRLSRTLSDCKTNEHVAVLFLDGDRFKEIND 305

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKI 202
           N+GH  GD V+  ++D+L  +      V RLGG+EFA   A + +++ +  I+AN++ K 
Sbjct: 306 NYGHAAGDVVLTTIADRLRALLRESDLVARLGGDEFAILLAPIYNTD-DVLIIANNIIKS 364

Query: 203 IENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252
           +    I +  G  I  ++S G+A    H +    ++ RAD+A+Y AKK  R
Sbjct: 365 M-TQPITLPDGSEIITSLSIGVAIYPDHAQTPDELLQRADEAMYQAKKGFR 414


>gi|260776227|ref|ZP_05885122.1| putative virulence-mediating protein VirC [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260607450|gb|EEX33715.1| putative virulence-mediating protein VirC [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 634

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 98/196 (50%), Gaps = 13/196 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--- 129
           I+ IT+   L Y+    L ++      +   +  D L+GL N   +I +  S ++ +   
Sbjct: 438 ILFITLFFALAYLVIRRLWKMKRITKELESQNTTDPLTGLANRR-YIENWLSQSDNVQQH 496

Query: 130 ---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
              ++   DID+FKQ ND  GH VGD V+   ++QL     +   + R GGEEF      
Sbjct: 497 KSYALSVIDIDHFKQFNDTHGHDVGDTVLKATANQLKNNTRSHDIIARWGGEEFVMIIPI 556

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST----IIYRADQ 242
            +          LRK +E+ +I+I    S+ +TIS G  + CH + I T    +  +AD+
Sbjct: 557 DNVHTVEETLERLRKSVESHKIHIDED-SLAVTISVG-TQLCHYQDIETDWDRVFRKADK 614

Query: 243 ALYVAKKSGRNRVVCF 258
           ALY AK+SGRN+ + F
Sbjct: 615 ALYQAKQSGRNKCITF 630


>gi|87120134|ref|ZP_01076030.1| probable sensory transduction system regulatory protein
           [Marinomonas sp. MED121]
 gi|86164836|gb|EAQ66105.1| probable sensory transduction system regulatory protein
           [Marinomonas sp. MED121]
          Length = 549

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 93/174 (53%), Gaps = 18/174 (10%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  LS +D L+ + N   +  +L          +E LS++ FDID FK+ NDN+GH  G
Sbjct: 374 KLKVLSELDPLTRIANRRLYNRTLIKEIAMAKRTSEPLSLLVFDIDDFKKYNDNYGHDNG 433

Query: 152 DKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-N 209
           D ++  ++  L   +  T  FV R GGEEF A    + E+ A ++A  +R  IE   + +
Sbjct: 434 DVILQEVAKILTNSITRTTDFVARYGGEEFVAILPATDEKGAFLVAERVRINIEAENLEH 493

Query: 210 ISSGPSIHITISAGI-----AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           I S     +T+S GI     A+ C KE    +  +AD ALY AK+ GRN+V+ +
Sbjct: 494 IHSSVLPCVTVSVGIATLKGAQLCKKE----LFQQADLALYKAKEGGRNQVITY 543


>gi|94984904|ref|YP_604268.1| diguanylate cyclase [Deinococcus geothermalis DSM 11300]
 gi|94555185|gb|ABF45099.1| diguanylate cyclase [Deinococcus geothermalis DSM 11300]
          Length = 385

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 12/164 (7%)

Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + + +R D L+GL N           +  LG  +    ++  D+D+FK IND  GHP GD
Sbjct: 211 LERQARTDPLTGLPNRRVLYQEIEQLLLDLGRGSPG-GVILLDLDHFKAINDTHGHPTGD 269

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+      L +   +   +GR GGEEF      +  +   ++A  LR  ++N+   ++ 
Sbjct: 270 DVLVQTGQLLRLDLRSEDILGRWGGEEFMVVLPATPAEGIGLVAERLRARLQNTPHPVAG 329

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                +T S G+A     +    +  RAD ALY AK+ GRNRVV
Sbjct: 330 ----IVTASFGVAAARPGDTFGELTTRADGALYRAKQGGRNRVV 369


>gi|332160521|ref|YP_004297098.1| hypothetical protein YE105_C0899 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318607010|emb|CBY28508.1| GGDEF family protein [Yersinia enterocolitica subsp. palearctica
           Y11]
 gi|325664751|gb|ADZ41395.1| hypothetical protein YE105_C0899 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330863664|emb|CBX73770.1| uncharacterized protein ydaM [Yersinia enterocolitica W22703]
          Length = 414

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 73/134 (54%), Gaps = 6/134 (4%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           Y +  S++  D+D+FK IND  GH  GD+V+ FL+  L  +      V R GGEEF    
Sbjct: 285 YGQNFSLILLDVDHFKNINDQLGHHKGDEVLIFLARTLESIIRECDIVFRWGGEEFTILL 344

Query: 185 LGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
             ++ + A  LA  +R+ I+   Q N+       +T+S G+A+    E   ++  R D+A
Sbjct: 345 PSTNLKGALQLAESIRETIQMICQPNLP-----QLTVSIGVAQHQVGEDTDSLFKRMDEA 399

Query: 244 LYVAKKSGRNRVVC 257
           LY AK SGRNRV+ 
Sbjct: 400 LYRAKASGRNRVLA 413


>gi|309779288|ref|ZP_07674050.1| response regulator WspR [Ralstonia sp. 5_7_47FAA]
 gi|308921846|gb|EFP67481.1| response regulator WspR [Ralstonia sp. 5_7_47FAA]
          Length = 371

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 83/177 (46%), Gaps = 11/177 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+GL N        SA           LS +  D+D FK  N
Sbjct: 184 QQLLEANLELRRLTNSDGLTGLANRRYLDEYLSAEWRRGAREGTTLSFLMIDVDNFKLYN 243

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+ +  +   +    G P     R GGEEFA    G+S +    LA  +R  
Sbjct: 244 DTYGHVAGDEALKRIGSTVEACLGRPGDLAARFGGEEFAVVLPGNSAEGLKQLAEKIRSA 303

Query: 203 IENSQI---NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           IE  Q+   + S+G  + ++I   +    H  P +T+I  AD ALY AK  G+NR V
Sbjct: 304 IEALQVPHMHSSTGGYVTVSIGGAVVTPMHDVPTTTLIEAADLALYQAKHEGKNRAV 360


>gi|228902555|ref|ZP_04066706.1| Sensory box/GGDEF family protein [Bacillus thuringiensis IBL 4222]
 gi|228856996|gb|EEN01505.1| Sensory box/GGDEF family protein [Bacillus thuringiensis IBL 4222]
          Length = 415

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ +D L+ + N   F   L          +EK++I+ FDID FK +ND +GH 
Sbjct: 246 YQEQERLAMVDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTVNDTYGHD 305

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 306 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 364

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +G S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 365 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 410


>gi|256822028|ref|YP_003145991.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Kangiella koreensis DSM 16069]
 gi|256795567|gb|ACV26223.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Kangiella koreensis DSM 16069]
          Length = 1128

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 18/171 (10%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFG 147
           I+  +I QLS  D L+GLL        L      S+ +K  +++++ D+D FK IND+ G
Sbjct: 687 IAEEKIHQLSNYDQLTGLLKREMLEERLQQLLDDSFKQKQAMTVMWLDLDNFKTINDSLG 746

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--- 204
           H VGD ++  ++++L    G    + R+ G+ FAA    ++E  AA++A ++ ++++   
Sbjct: 747 HQVGDLILIEVANRLRFELGKQSIISRIAGDTFAAVLPLTNEHSAALIAKNVLEVVQRQI 806

Query: 205 --NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             NS I +S  PSI + IS    +   K     +I  A+ A+Y AK  GRN
Sbjct: 807 KFNSHI-LSISPSIGLAISPNDGQSADK-----LIMCAETAMYRAKHDGRN 851


>gi|167623669|ref|YP_001673963.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167353691|gb|ABZ76304.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 341

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 85/162 (52%), Gaps = 12/162 (7%)

Query: 107 DCLSGLLNHSAFISSLGS----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+  LN  AF   L      + + L ++  DID+FK  ND +GH +GD+V+  ++ +L
Sbjct: 182 DALTNSLNRRAFNKDLKGIIELHPQGLCLIIADIDHFKVFNDTYGHQLGDQVLKAVTKRL 241

Query: 163 VVVFGTPMFVGRLGGEEFA----AAALGSSEQEAAILANDLRKIIENSQINISSGPSI-H 217
                    + R GGEEFA     + LG + Q A  +   L K+I   +     G +I +
Sbjct: 242 TEACQDGTKLYRFGGEEFALIVPKSQLGRARQLAESMRRSLEKLILKDR---RKGDTINN 298

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I+ S G+AE    +  + +I RAD+ LY AK+ GRNRV+  S
Sbjct: 299 ISASFGVAEYQLNDTDNQLIERADKQLYEAKRLGRNRVMPIS 340


>gi|317402689|gb|EFV83242.1| signaling protein [Achromobacter xylosoxidans C54]
          Length = 265

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 8/164 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGD 152
           + + SR D L+GLLN  A +  +    ++ +       +   D+D+FK +ND +GH VGD
Sbjct: 97  LEETSRRDPLTGLLNRRALMELIKQEVQRAARGGQAFVVAMLDVDHFKAVNDRYGHEVGD 156

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  L+  +          GR GGEEF      +  + A  + + L   +    I++ +
Sbjct: 157 RALVELAGAMRHSVREYDLCGRWGGEEFLVLLPATPPETAQGVMDRLVGAVRALAIDVGA 216

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              + +T+S G+A     E  S  + RADQALY+AK+ GR+RV 
Sbjct: 217 D-VLRLTVSIGMAYHQLGETFSETLSRADQALYLAKQDGRDRVA 259


>gi|119962393|ref|YP_949721.1| GGDEF domain-containing protein [Arthrobacter aurescens TC1]
 gi|119949252|gb|ABM08163.1| putative GGDEF domain protein [Arthrobacter aurescens TC1]
          Length = 400

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 88/174 (50%), Gaps = 14/174 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            ++ + +  D L+GLLN  AF+       +  +  +  +++  D+DYFK IND  GH  G
Sbjct: 223 TKLKERAERDHLTGLLNRGAFLGLAAKELAGPASRQGGALILADLDYFKAINDEHGHAAG 282

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D  +   ++       +   VGR GGEEF     G+++Q A  +A+++ +     +++  
Sbjct: 283 DAALCAFAEACTASVRSTDLVGRYGGEEFILFLPGATQQRAEAIASEISR-----RLSSM 337

Query: 212 SGPS--IHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +GP      T+S G+       P ++ +I  AD ALY AK  GRNRVV    ++
Sbjct: 338 AGPDGLPFPTVSYGVTSTGTGTPDLAFMINVADAALYTAKGQGRNRVVGADSVD 391


>gi|120553236|ref|YP_957587.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120323085|gb|ABM17400.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 504

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 105/210 (50%), Gaps = 15/210 (7%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F+G++ +   +    +  + I ++ G +SG++ +   +  + ++Q  R D L+GL N   
Sbjct: 291 FFGVDSLSRRSWRRDMADLLI-IVSGLLSGALERNR-LEEDLLNQSIR-DPLTGLHNRRY 347

Query: 118 FISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
            +  L         + ++  +  FDID+FK+INDN GH  GD+V+   +D L+    T  
Sbjct: 348 LMPRLDEILAASNRHGDRFCLAMFDIDHFKRINDNLGHLAGDQVLMRFTDVLLAHTRTTD 407

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERC 228
            V R GGEEF     G +E+E   L   + + +   +  +  G ++ +T+SAG       
Sbjct: 408 VVSRFGGEEFLVVFTGVTEREVQTLVMRIMEAVREEEW-LVDGKALTVTVSAGAVCVSEL 466

Query: 229 HKEPIS--TIIYRADQALYVAKKSGRNRVV 256
             EP +   +I RAD  LY AK  GR+ +V
Sbjct: 467 TDEPATPEALIARADDRLYQAKDGGRDCLV 496


>gi|300716926|ref|YP_003741729.1| RNase II stability modulator [Erwinia billingiae Eb661]
 gi|299062762|emb|CAX59882.1| RNase II stability modulator [Erwinia billingiae Eb661]
          Length = 660

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A   ++         +++ IV+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRVLANTDTITGLPNRNAINHAIAEALEQRVEQQIGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILA 196
           ++ND +GH  GD+++  +S  ++        + RLGG+EF     AA+  S E  A+ + 
Sbjct: 279 KVNDAYGHMFGDQLLQAVSLAILSCLDKDQTLARLGGDEFIVLATAASQASLEAMASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + L++      I + SG SI I +S       H E   +++  AD A+Y AK++GR +  
Sbjct: 339 DRLKQPFRIGLIEVYSGCSIGIAVSP-----QHGEDKESLMRNADTAMYTAKENGRGKFC 393

Query: 257 CFS 259
            FS
Sbjct: 394 IFS 396


>gi|262192355|ref|ZP_06050509.1| GGDEF domain protein [Vibrio cholerae CT 5369-93]
 gi|262031781|gb|EEY50365.1| GGDEF domain protein [Vibrio cholerae CT 5369-93]
          Length = 261

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 118/265 (44%), Gaps = 31/265 (11%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           IW C       F P  F I+ S  F+   + +  I    + Y          + L +  +
Sbjct: 6   IWSC-------FVPILFYIFTSARFAFVTSCLFLIIQSNIIY----------WQLQQTGA 48

Query: 71  LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLG-- 123
            +  S+ + L   YI   ++  ++    R     +  L+  D L+G  N  +  +S    
Sbjct: 49  AISWSVLLHLCFAYIGIWVVAHVYEDNRRKIENSLLYLASRDPLTGAHNRLSLTTSFQHF 108

Query: 124 -SYNEKLSIVFF--DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
             +N++ S+     D+D+FK IND FGH  GDKV+   +     V G      R+GGEEF
Sbjct: 109 ERFNDQTSLCLLVIDLDFFKSINDQFGHDTGDKVLMETTRLFTQVVGDNNLY-RIGGEEF 167

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYR 239
                  S ++A  +   LR I+  SQ   + G   + +TIS G+ E    + ++ ++  
Sbjct: 168 CVTLFDQSLEQAGRVCERLRAIV--SQHLFAFGEKRVQVTISIGVCEYQAGDQLNDLLKF 225

Query: 240 ADQALYVAKKSGRNRVVCFSDIENN 264
           AD  LY AKK+GRN+V  F    +N
Sbjct: 226 ADMELYRAKKAGRNQVRLFRHGSSN 250


>gi|90407639|ref|ZP_01215819.1| sensory box/GGDEF family protein [Psychromonas sp. CNPT3]
 gi|90311230|gb|EAS39335.1| sensory box/GGDEF family protein [Psychromonas sp. CNPT3]
          Length = 325

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 11/171 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDN 145
           L  ++ ++   S  D L+ L NH  +               + +S++  DID+FK IND 
Sbjct: 144 LHEAHKKLEHDSHTDSLTQLHNHGFWKECCQQEYKRYIRTQQNVSLLMIDIDHFKNINDT 203

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GHP GDKV+  ++  +     +    GR GGEEF+   + S  ++A ++A  +  +I+ 
Sbjct: 204 YGHPFGDKVLQDVAQAIQQQMRSIDIAGRYGGEEFSVLLIDSDLEQAKVVAKRISDVIKA 263

Query: 206 SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
                     I +TIS GIA    K E     I  AD+ LY+AK +GR+++
Sbjct: 264 LSF---KDKEIELTISIGIASLNKKIESYQQWINIADKGLYIAKNAGRDQI 311


>gi|67459442|ref|YP_247066.1| response regulator PleD [Rickettsia felis URRWXCal2]
 gi|67004975|gb|AAY61901.1| Regulatory components of sensory transduction system [Rickettsia
           felis URRWXCal2]
          Length = 450

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 78/162 (48%), Gaps = 8/162 (4%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N   F       I      + KL ++  DID FK +ND +GH  GDKV+
Sbjct: 287 LAAKDGLTGLFNRRYFDIHLKQMIEKANKESIKLYLLMCDIDNFKHVNDTYGHQAGDKVL 346

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-P 214
             +S  L         + R GGEEF          +A   A  +R  IE    +I     
Sbjct: 347 TIVSRILKNTLRVTDLIARFGGEEFTILLTDIDISKAIETAERVRVKIEYMDFHIEDQIE 406

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  TIS G+ E   +E I + I RAD+A+Y AK +G+N+VV
Sbjct: 407 PLKKTISIGVTEYKKEESIESFIERADKAMYEAKTTGKNKVV 448


>gi|15806110|ref|NP_294814.1| GGDEF family protein [Deinococcus radiodurans R1]
 gi|6458824|gb|AAF10664.1|AE001959_4 GGDEF family protein [Deinococcus radiodurans R1]
          Length = 356

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 91/196 (46%), Gaps = 13/196 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRI---------DCLSGLLNHSAFISSLG 123
           ++++ + LL+   +G  L  L I  NR   LS I         D LS L N   F     
Sbjct: 158 LLTVYLPLLVVTYAG-FLVSLGIQRNRYRLLSLIATYEQQAHQDALSDLPNRRQFDLDFV 216

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
             +    +   DID+FK+IND +GH  GD+V+  L   L     +     R GGEEFA  
Sbjct: 217 RMDVGDLLCLVDIDHFKKINDTYGHAAGDEVLTQLGGVLKGRLRSHDQAYRYGGEEFAVI 276

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
                     +LA  LR+ +E++     +G    +T+S G+  R    P+ T    ADQA
Sbjct: 277 FRSPGNAAPELLAERLRQAVEHTSFTALAGHP--LTVSIGVTRRG-AAPLDTCFLEADQA 333

Query: 244 LYVAKKSGRNRVVCFS 259
           LY AK +GRN+V  + 
Sbjct: 334 LYAAKTAGRNQVRVWP 349


>gi|117924448|ref|YP_865065.1| diguanylate cyclase [Magnetococcus sp. MC-1]
 gi|117608204|gb|ABK43659.1| diguanylate cyclase [Magnetococcus sp. MC-1]
          Length = 634

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 82/163 (50%), Gaps = 10/163 (6%)

Query: 106 IDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D ++GL N        +   S      +K+ ++  D+D+FKQ+ND +GH VGD V+   
Sbjct: 464 VDPMTGLHNRRFLQECANNLCSGSQRRGKKIGLLMCDLDFFKQVNDTYGHDVGDSVLKIT 523

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           S+ L         V R GGEEF    +     E   LA  +RK IE ++  +   P +  
Sbjct: 524 SEILQNSVRQSDLVVRFGGEEFIIILVDIESDEVMGLAEKIRKQIEATEFPVPGKPPLKK 583

Query: 219 TISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFS 259
           TIS GI+     E     T+ Y AD ALY AK++GRN+ V F+
Sbjct: 584 TISIGISVYPDDEDGFWKTLKY-ADVALYKAKENGRNQSVRFT 625


>gi|320155997|ref|YP_004188376.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
 gi|319931309|gb|ADV86173.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
          Length = 439

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 14/183 (7%)

Query: 78  ISLLLGYISGS--ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIV 132
           I LLL    G+   L +L  +  ++ ++S +D LSGL N+  F++ +       E    V
Sbjct: 262 IPLLLAITVGACYYLYKLNKAQKKLKEISYLDPLSGL-NNRHFLAEVEKQQLPLEHYYAV 320

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK +ND +GH +GD+VI  ++  +        +  R+GGEEF       S  EA
Sbjct: 321 MLDIDHFKSVNDRYGHDIGDQVIRRVAKVVKSRIRVSDYAFRIGGEEFLLLVKTPSSNEA 380

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             +   +R+ +E    N++  P  H+T+S G      +  +   I  AD  LY AK++GR
Sbjct: 381 RQVCERIRQDVE----NMTQAP--HVTVSIGFT--ALQTQLDETIRIADSHLYDAKRNGR 432

Query: 253 NRV 255
           NRV
Sbjct: 433 NRV 435


>gi|289670070|ref|ZP_06491145.1| putative sensor protein [Xanthomonas campestris pv. musacearum
            NCPPB4381]
          Length = 1012

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 7/174 (4%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            +L  L I  +   + +  D L+GL N   F       IS        L +   DID+FK+
Sbjct: 836  LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSARPLVLAILDIDHFKR 895

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            IND++ H  GD V+  +   L           RLGGEEFA     ++ +EA  L   +R 
Sbjct: 896  INDHYSHASGDAVLHEVGVLLTAAARASDLPARLGGEEFALLLADTTLEEAQALCLRIRA 955

Query: 202  IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +         S   + +T SAG+AE    +  S+++ RAD ALY AK +GR+R+
Sbjct: 956  LFHARHDWWGSVEGLQVTFSAGVAELRDDDTGSSLMQRADHALYEAKSAGRDRI 1009


>gi|228941196|ref|ZP_04103749.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974128|ref|ZP_04134698.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228785468|gb|EEM33477.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818355|gb|EEM64427.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 415

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ +D L+ + N   F   L          +EK++I+ FDID FK +ND +GH 
Sbjct: 246 YQEQERLAMVDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTVNDTYGHD 305

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 306 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 364

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +G S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 365 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 410


>gi|221633786|ref|YP_002523012.1| putative sensory box protein [Thermomicrobium roseum DSM 5159]
 gi|221155589|gb|ACM04716.1| putative sensory box protein [Thermomicrobium roseum DSM 5159]
          Length = 1056

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 87/166 (52%), Gaps = 8/166 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++ +L+  D L+G+ N ++ ++ L       E  + +  D+D FK +ND FGH VGD ++
Sbjct: 594 QLERLATTDELTGIANRASLLAHLDHVARAGEPFAALLIDLDGFKAVNDTFGHLVGDALL 653

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++ +L         VGRLGG+EF   A     + A  LAN  R ++  +      G +
Sbjct: 654 REVAQRLRRSVRQDDLVGRLGGDEFLVLARVQDTEGARELAN--RILVALTHPFRIDGQT 711

Query: 216 IHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFS 259
           IH+  S GIA  C   P  T  I+  AD ALY AK+ G+ RVV FS
Sbjct: 712 IHLGGSVGIA-FCDGRPCDTTEILRAADLALYEAKRRGKGRVVLFS 756


>gi|167836162|ref|ZP_02463045.1| GGDEF domain protein [Burkholderia thailandensis MSMB43]
          Length = 466

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 9/175 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L+EL  +  ++  L+  D L+G  N   FI  + +            S++  D+D FK I
Sbjct: 291 LQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQAEIARAKRDGTAFSLLALDLDNFKTI 350

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           NDN+GH VGD V+     Q +        + R+GGEEF           A+ +A  +R  
Sbjct: 351 NDNYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRTT 410

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           I N+   I  G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV
Sbjct: 411 IANAPFGI-DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVV 464


>gi|293410312|ref|ZP_06653888.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470780|gb|EFF13264.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 569

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 376 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 435

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 436 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 495

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            +AA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 496 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 555

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 556 KQAGRNRV 563


>gi|218885613|ref|YP_002434934.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756567|gb|ACL07466.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 498

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 10/176 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y  +   +  D L+ L N  +    L +       Y   ++++  D+D+FK IND +GH 
Sbjct: 319 YREVKLQADHDALTRLHNRRSLDERLRTEFERHRRYGHSMTLLLLDLDHFKAINDTYGHL 378

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  L+D L     T  F  R GGEEF      + E +  +LA  LR  IE  ++ 
Sbjct: 379 AGDAVLRELADVLRHSIRTTDFAARYGGEEFVVILPHTEEAQGHMLAERLRHRIEQCRVQ 438

Query: 210 ISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
              G  +  T+S G+A         +  ++  AD+ALY+AK +GRN V   S  E+
Sbjct: 439 -HHGVQLSATVSIGVAGFSPGAFANVEELVREADRALYLAKANGRNVVCTMSGCED 493


>gi|78484454|ref|YP_390379.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78362740|gb|ABB40705.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2]
          Length = 461

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 10/179 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           +++  +++ ID L+ + N    +  L             LS+   DID+FK +ND +GH 
Sbjct: 284 HSKFQKMAAIDSLTAIYNRRFGMDRLREDFSRAVREQSSLSLAMVDIDHFKSVNDTYGHL 343

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGDK I  ++  +         V R GGEEF     G+S   A  +   +R  ++++   
Sbjct: 344 VGDKAIKLIATIIKKTLREGDIVVRYGGEEFLMILHGASSTNARNVCERIRHQVKDTFFK 403

Query: 210 ISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
                 I +T+S GIA    ++      +I+ ADQALY AK+ GRNRVV F  +     
Sbjct: 404 -EGNQQIQLTVSIGIAAYPEQQAGDEMALIHMADQALYYAKEGGRNRVVPFRKVNEEVA 461


>gi|117918906|ref|YP_868098.1| diguanylate cyclase with GAF sensor [Shewanella sp. ANA-3]
 gi|117611238|gb|ABK46692.1| diguanylate cyclase with GAF sensor [Shewanella sp. ANA-3]
          Length = 347

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 11/193 (5%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEKLS 130
           +I +  L  +I  +I   L +    +  L+  D L+G  N   F      ++  ++E   
Sbjct: 154 AIELQCLANWIGLNI--SLRLQLKELEYLASTDHLTGAANRRVFTQKIRQAMTEFHENGQ 211

Query: 131 IVFF---DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
             FF   DID+FK +ND FGH  GD V+  +      +  +P    R+GGEEFA      
Sbjct: 212 SFFFGLMDIDHFKMLNDQFGHSAGDYVLQRIVAISETMMTSPGKFFRIGGEEFAIIFPEQ 271

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYV 246
           SE E     ND+R+ I  + ++    P I +++S G  A   H     +++ R+D+ALY 
Sbjct: 272 SEYEPLRFFNDIREAIALAAMDYDGIP-ISVSVSIGFTAMHIHDNTPESLLRRSDKALYQ 330

Query: 247 AKKSGRNRVVCFS 259
           AK +GRNRV+ F+
Sbjct: 331 AKLAGRNRVLMFN 343


>gi|322615719|gb|EFY12639.1| hypothetical protein SEEM315_11144 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618780|gb|EFY15669.1| hypothetical protein SEEM971_11408 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322621806|gb|EFY18656.1| hypothetical protein SEEM973_16867 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627531|gb|EFY24322.1| hypothetical protein SEEM974_12706 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322630838|gb|EFY27602.1| hypothetical protein SEEM201_04083 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637944|gb|EFY34645.1| hypothetical protein SEEM202_04839 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642214|gb|EFY38822.1| hypothetical protein SEEM954_00677 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645804|gb|EFY42327.1| hypothetical protein SEEM054_14318 [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651099|gb|EFY47484.1| hypothetical protein SEEM675_13292 [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656645|gb|EFY52933.1| hypothetical protein SEEM965_17245 [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659930|gb|EFY56173.1| hypothetical protein SEEM19N_09329 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322661861|gb|EFY58077.1| hypothetical protein SEEM801_15151 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666393|gb|EFY62571.1| hypothetical protein SEEM507_04169 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672812|gb|EFY68923.1| hypothetical protein SEEM877_16519 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676241|gb|EFY72312.1| hypothetical protein SEEM867_15728 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680726|gb|EFY76764.1| hypothetical protein SEEM180_13498 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684380|gb|EFY80384.1| hypothetical protein SEEM600_16622 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194282|gb|EFZ79479.1| hypothetical protein SEEM581_16595 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197429|gb|EFZ82569.1| hypothetical protein SEEM501_12216 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201454|gb|EFZ86518.1| hypothetical protein SEEM460_20601 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205968|gb|EFZ90930.1| hypothetical protein SEEM020_10035 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212980|gb|EFZ97782.1| hypothetical protein SEEM6152_11543 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215352|gb|EGA00096.1| hypothetical protein SEEM0077_06758 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323223317|gb|EGA07654.1| hypothetical protein SEEM0047_19617 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226156|gb|EGA10373.1| hypothetical protein SEEM0055_17980 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228809|gb|EGA12938.1| hypothetical protein SEEM0052_04145 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236580|gb|EGA20656.1| hypothetical protein SEEM3312_19846 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239920|gb|EGA23967.1| hypothetical protein SEEM5258_01445 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242033|gb|EGA26062.1| hypothetical protein SEEM1156_13742 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247819|gb|EGA31756.1| hypothetical protein SEEM9199_13999 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251541|gb|EGA35412.1| hypothetical protein SEEM8282_18017 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323258092|gb|EGA41769.1| hypothetical protein SEEM8283_07171 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263765|gb|EGA47286.1| hypothetical protein SEEM8284_08439 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265641|gb|EGA49137.1| hypothetical protein SEEM8285_06025 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270086|gb|EGA53534.1| hypothetical protein SEEM8287_18206 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 354

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 118/250 (47%), Gaps = 20/250 (8%)

Query: 32  SIFFSIFIATVIFIANIFLFYI-GLTPF----------YGLEYILVENLSLVIISITISL 80
           S+   +FI ++ F ANI  F +  L P            GL  + +  L +V I+I   +
Sbjct: 104 SLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWLNGNEQGLRILYLLALPMVGIAIQHVI 163

Query: 81  LLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFF 134
              Y   +  ++ +L      ++ LS +D L+GL N     + L +     S    ++  
Sbjct: 164 QKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGLYNRRGLQNRLDTLQAPGSHEHYVLLL 223

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK  ND++GH +GD+ +  +S  +     +   V R GGEEF      +  Q+A  
Sbjct: 224 DIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTTAEPQQARA 283

Query: 195 LANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            A  +R+ + + +I      S+  ++T+S GIA    +  I   I +AD+ALY AK  GR
Sbjct: 284 TAERIRQEVYDLKIPHMFNESVATNVTVSIGIAPLTDRN-IGNAIEKADKALYEAKHLGR 342

Query: 253 NRVVCFSDIE 262
           N ++   D+ 
Sbjct: 343 NHILVSDDMR 352


>gi|318607213|emb|CBY28711.1| inner membrane protein YfiN [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 453

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 11/171 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQIND 144
           K L    + ++  +  D L+GL N + F   L         NE ++++F D D FK+IND
Sbjct: 246 KHLTQENDSLAHRAAHDSLTGLANRAYFEGRLSRTLSDCKTNEHVAVLFLDGDRFKEIND 305

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKI 202
           N+GH  GD V+  ++D+L  +      V RLGG+EFA   A + +++ +  I+AN++ K 
Sbjct: 306 NYGHAAGDVVLTTIADRLRALLRESDLVARLGGDEFAILLAPIYNTD-DVLIIANNIIKS 364

Query: 203 IENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252
           +    I +  G  I  ++S G+A    H +    ++ RAD+A+Y AKK  R
Sbjct: 365 M-TQPITLPDGSEIITSLSIGVAIYPDHAQTPDELLQRADEAMYQAKKGFR 414


>gi|156975533|ref|YP_001446440.1| hypothetical protein VIBHAR_03265 [Vibrio harveyi ATCC BAA-1116]
 gi|156527127|gb|ABU72213.1| hypothetical protein VIBHAR_03265 [Vibrio harveyi ATCC BAA-1116]
          Length = 403

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 5/155 (3%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +++  D L+GL N         S  EK +I   DID+FK++NDN+GH  GD  +  +++ 
Sbjct: 253 RMANQDALTGLWNRRFLFGQACSGCEKRNIAMLDIDFFKKVNDNYGHDGGDAALVMVANI 312

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L + F   + + R GGEEF   A GS + +  I    +R+ +E + +   +  SI +TIS
Sbjct: 313 LKIYFPDDV-IARFGGEEFCIQACGSYD-DFVIRLEQMRQRVEKTPVPYQND-SIQVTIS 369

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G++    +  +   I  AD  LY AK+SGRN+ +
Sbjct: 370 IGVSSV--EGNLDQQIKVADDRLYQAKESGRNQTI 402


>gi|71279148|ref|YP_267210.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71144888|gb|AAZ25361.1| sensory box/GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 451

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 91/177 (51%), Gaps = 13/177 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           ELF        L+  D L+ L N   FI            Y+  ++++  DID+FK IND
Sbjct: 277 ELFKLKEEFKLLANTDPLTNLYNRRFFIEQAEKEYQRAKRYSLSMTLISIDIDHFKSIND 336

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGHP GD+V+  ++ QL         + R+GGEEF+     +S   A   A  +++  E
Sbjct: 337 QFGHPAGDQVLIEIAKQLKASLRQTDILARIGGEEFSILLPETSAMSAMTFAERIKE--E 394

Query: 205 NSQINISSG--PSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCF 258
            S++ I+      I++++S G++     +    +++ RAD+ALY AK +GRN  VC+
Sbjct: 395 QSRLIITGDWQGEINLSVSIGVSSLIASDKAFDVLFSRADKALYQAKNTGRN-TVCY 450


>gi|21230829|ref|NP_636746.1| hypothetical protein XCC1372 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769172|ref|YP_243934.1| hypothetical protein XC_2866 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21112432|gb|AAM40670.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574504|gb|AAY49914.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 221

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 89/185 (48%), Gaps = 22/185 (11%)

Query: 96  SYNRISQLSRI---DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145
           S NR+  L+     D L+G+ N     ++L    E        LSI F D+D FK++ND 
Sbjct: 31  SENRMRHLAEQASRDALTGVFNRHQLGTALAHEFELATRQAWPLSIAFIDLDDFKRVNDA 90

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKII 203
            GH VGD+V+   +  L  +  T   V R GGEEF    L ++  EAA++  +  L +  
Sbjct: 91  HGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEF-LVILPNTTAEAALMVIERILAETA 149

Query: 204 ENSQINISSGPSIHITISAGIAERCHK------EPISTIIYRADQALYVAKKSGRNRVVC 257
                 +  GP +HIT SAG+A   H       E I  ++  AD  LY +K  GRNRV  
Sbjct: 150 RTPMAQLPGGP-LHITFSAGLA--THGGGDRQFESIEHLLQAADTTLYRSKHRGRNRVTA 206

Query: 258 FSDIE 262
           +   E
Sbjct: 207 YDATE 211


>gi|262045085|ref|ZP_06018126.1| response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259037600|gb|EEW38830.1| response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 168

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 74/154 (48%), Gaps = 7/154 (4%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ LLN       L         Y+  L++   DID+FK+IND +GH VGD+ I  ++
Sbjct: 6   DALTSLLNRRYLPVVLKHEVTLAIEYDLPLTVAIIDIDFFKEINDKWGHMVGDRAIKHVA 65

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           D L     +  ++ R GGEEF    + +   EA  L   LRK I     N+     I IT
Sbjct: 66  DLLSDNIRSSDYLFRYGGEEFLLVLVETRAAEAFPLLERLRKKIGQLAFNVGGDTQIPIT 125

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            S G A        + ++  AD ALY AK+ GRN
Sbjct: 126 ASIGFAAHTGHPDYNLLLRDADNALYAAKREGRN 159


>gi|196019114|ref|XP_002118927.1| hypothetical protein TRIADDRAFT_62909 [Trichoplax adhaerens]
 gi|190577679|gb|EDV18587.1| hypothetical protein TRIADDRAFT_62909 [Trichoplax adhaerens]
          Length = 455

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 70/133 (52%), Gaps = 2/133 (1%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
             K S+   DID FK IND  GH  GD+V+  +S            + R GGEEF     
Sbjct: 229 KRKFSVAIADIDRFKSINDTLGHEQGDEVLRQISKVFSSRLRGQDILARWGGEEFMFIFT 288

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            + E  A     ++R I+ N+ +NI+ G  IH+T S G++E      IS  + RADQALY
Sbjct: 289 DTDEAGAVNALENIRDILNNAPLNIN-GSEIHVTSSFGVSEVNPDIDISCAVRRADQALY 347

Query: 246 VAKKSGRNRV-VC 257
            AK +GR+ V +C
Sbjct: 348 YAKDNGRDCVYIC 360


>gi|153875655|ref|ZP_02003359.1| two-component response regulator [Beggiatoa sp. PS]
 gi|152067881|gb|EDN66641.1| two-component response regulator [Beggiatoa sp. PS]
          Length = 335

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 95/172 (55%), Gaps = 17/172 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVG 151
            + +L+ +DCL+ + N   F   L S  ++L       S++F DIDYFK  ND++GH  G
Sbjct: 162 ELERLNALDCLTQIANRRRFEEYLSSEWQRLLPVRLPLSLIFADIDYFKHYNDHYGHQAG 221

Query: 152 DKVIAFLSDQLVVVFGTPM--FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           D+ +  ++ Q +     P+   V R GGEEF      ++ QEA  +A ++++ +   ++ 
Sbjct: 222 DECLQQVA-QAINRTAKPLSYLVARYGGEEFVILLPQTNIQEATQIAEEIQESV--YKLK 278

Query: 210 ISSGPSI---HITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256
           I + PS+   ++++S GI+     + +S   ++  AD+ALY AK  GRN +V
Sbjct: 279 IVTAPSVENKYVSLSMGISSLIPNKDVSPKELVKMADEALYEAKGQGRNCIV 330


>gi|194336472|ref|YP_002018266.1| diguanylate cyclase [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308949|gb|ACF43649.1| diguanylate cyclase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 433

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 70/135 (51%), Gaps = 2/135 (1%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           NEK+S+   DIDYFK+ ND  GH  GD+ +  L+D +           R GGEEFA    
Sbjct: 285 NEKVSLAMIDIDYFKRYNDANGHLAGDRALKALADIISTQCRAYDVPSRFGGEEFAILFP 344

Query: 186 GSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQA 243
            +  + A+ +A  LRKII           P+  +T+S G+A           +I  AD+A
Sbjct: 345 KTDTETASEIAERLRKIISRESFRQQQQQPAGELTVSIGVATFPADAADWHNLINNADRA 404

Query: 244 LYVAKKSGRNRVVCF 258
           LY AK +GRN+VV F
Sbjct: 405 LYKAKSNGRNKVVTF 419


>gi|254508490|ref|ZP_05120609.1| ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219548602|gb|EED25608.1| ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 486

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 13/169 (7%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL--GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +  +  L+  D ++GLLN       L    + E ++I  FDID FK IND +GH VGD
Sbjct: 323 VEHGYLKDLAAKDAMTGLLNRRGLQDFLVNAQHGEYVAIAVFDIDNFKSINDTYGHDVGD 382

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR---KIIENSQIN 209
            VI +++DQ+         V R GGEEF     GS+    A+  + LR    I   SQ  
Sbjct: 383 NVICYMADQITYSIRASDAVARFGGEEFVVYMSGSNRD--ALKKSLLRVQQSIRSRSQEV 440

Query: 210 ISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++ G     T+S G  I +         +   AD+ LY AK SG++++V
Sbjct: 441 VAPG----FTVSGGVEIVDEAQASNFEALFKAADEKLYQAKTSGKDKLV 485


>gi|119470954|ref|ZP_01613538.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Alteromonadales bacterium TW-7]
 gi|119445976|gb|EAW27256.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Alteromonadales bacterium TW-7]
          Length = 362

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 71/127 (55%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           SI+  D+D+FK INDN+GH  GD V+   +  L   F +     R GGEEF      ++ 
Sbjct: 232 SILLLDLDHFKSINDNYGHDSGDTVLIEFTKMLESHFSSDSIKARYGGEEFVVILPKATI 291

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           Q A  +AN+ R+ + N+ +      ++ +T S G+A+       +  + +AD+ LY AK+
Sbjct: 292 QIAEHIANNFRESVANTTLLNVESKNVALTCSIGVAQVNKLSDYNDALKQADRCLYKAKE 351

Query: 250 SGRNRVV 256
           +GRN+VV
Sbjct: 352 TGRNKVV 358


>gi|333003053|gb|EGK22607.1| cellulose synthesis regulatory protein [Shigella flexneri VA-6]
          Length = 558

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ LL  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G++ 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGANL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            +AA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 545 KQAGRNRV 552


>gi|307728993|ref|YP_003906217.1| diguanylate cyclase [Burkholderia sp. CCGE1003]
 gi|307583528|gb|ADN56926.1| diguanylate cyclase [Burkholderia sp. CCGE1003]
          Length = 563

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 87/185 (47%), Gaps = 31/185 (16%)

Query: 90  LKELFISYNRI-SQLSRIDCLSG---------LLNHSAFISSLGSYNEKLSIVFFDIDYF 139
           L E   S N + S  +R D L+G         LL H    + LG  N+ L +   D+D+F
Sbjct: 372 LAEQLQSANTLLSAEARHDALTGALSRRYFLDLLRHEIDRAHLG--NQPLCMAIADLDHF 429

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQIND FGH  GD+ +    D           +GRLGGEEF             + A DL
Sbjct: 430 KQINDRFGHAAGDRALEHFVDTCRAELRGADAIGRLGGEEFG----------LLLPATDL 479

Query: 200 ---RKIIENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
              R+++E  ++ + + P      S+ +++S GI E    +    I+ RAD ALY AK  
Sbjct: 480 AGGREVVERLRLRLKAVPSSKLPASVTLSVSIGITELSVDDLPERIMSRADMALYAAKTG 539

Query: 251 GRNRV 255
           GR+R 
Sbjct: 540 GRDRT 544


>gi|289166719|ref|YP_003456857.1| regulatory protein (GGDEF domain) [Legionella longbeachae NSW150]
 gi|288859892|emb|CBJ13878.1| putative regulatory protein (GGDEF domain) [Legionella longbeachae
           NSW150]
          Length = 735

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 1/136 (0%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +S++  D+D+FK+IND +GH  GD  +  L   L           R GGEEF  A   + 
Sbjct: 582 ISLLMLDLDHFKKINDTYGHDAGDVALKELGKILQEDIRVGDIAARYGGEEFIVAFYNTD 641

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVA 247
           E+     A  +R+ +   Q+   + P   IT+S G+A         + +I  AD+ALY A
Sbjct: 642 EKTIKTRAESIREAVSRLQVKYGAQPVGPITVSIGVAVYPTDGRNTNELIESADKALYFA 701

Query: 248 KKSGRNRVVCFSDIEN 263
           K +G+NR+V +S+I+N
Sbjct: 702 KTNGKNRIVLYSEIDN 717


>gi|153833943|ref|ZP_01986610.1| response regulator [Vibrio harveyi HY01]
 gi|148869681|gb|EDL68662.1| response regulator [Vibrio harveyi HY01]
          Length = 404

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 5/155 (3%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +++  D L+GL N         S  EK +I   DID+FK++NDN+GH  GD  +  +++ 
Sbjct: 253 RMANQDALTGLWNRRFLFGQACSGCEKRNIAMLDIDFFKKVNDNYGHDGGDAALVMVANI 312

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L + F   + + R GGEEF   A GS + +  I    +R+ +E + +   +  SI +TIS
Sbjct: 313 LKIYFPDDV-IARFGGEEFCIQACGSYD-DFVIRLEQMRQRVEKTPVPYQND-SIQVTIS 369

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G++    +  +   I  AD  LY AK+SGRN+ +
Sbjct: 370 IGVSSV--EGNLDQQIKVADDRLYQAKESGRNQTI 402


>gi|167031624|ref|YP_001666855.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas putida GB-1]
 gi|166858112|gb|ABY96519.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas putida GB-1]
          Length = 452

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 82/158 (51%), Gaps = 10/158 (6%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +  L           + LS    DID+FK+IND  GHP+GD+VI  L+
Sbjct: 293 DSLTGLYNHTHILQLLEDCSFRARREQQPLSFAMLDIDHFKKINDRHGHPMGDRVIKSLA 352

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218
             L        F+GR GGEEFA     ++   A  + +++R+    ++I   + P  +  
Sbjct: 353 LFLKQRLRKTDFIGRYGGEEFAIVMPNTALDAAHRVLDEIRRRF--AEILYPAQPRDLQC 410

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T SAG+ +        T+   AD+ALY AK +GRN VV
Sbjct: 411 TFSAGVVQLDEGLDALTMASAADEALYRAKHAGRNCVV 448


>gi|90020307|ref|YP_526134.1| triosephosphate isomerase [Saccharophagus degradans 2-40]
 gi|89949907|gb|ABD79922.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 855

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 8/168 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R++ ++  D L+ L N  AF   L +       Y+ K++++  D+D+FK IND++GHPVG
Sbjct: 418 RLAHIAFTDELTSLPNRLAFSKKLKNTMKLAEKYHGKVAMLIVDLDHFKDINDSYGHPVG 477

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D +I  +  +L  V     ++ R+GG+EFA         +AA+  +   + I    I + 
Sbjct: 478 DSLICEVVTRLKEVLVGDEYLARIGGDEFALILDNVRSHDAALHYSRRIQKIMAEPIYLM 537

Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            GP ++  +S G+A      E    +I  AD A++ AKKSGRN V+ +
Sbjct: 538 EGPVVNARVSMGVALFPDDGEDAVALIKAADLAMHQAKKSGRNTVLPY 585


>gi|327395334|dbj|BAK12756.1| GGDEF domain protein YneF [Pantoea ananatis AJ13355]
          Length = 485

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 124/249 (49%), Gaps = 22/249 (8%)

Query: 24  PHTFMIYFSIFFSIFIATVIF----IANIFLFYIGLTPFYGLEYIL----VENLSLVIIS 75
           P   +I+ +I   + + ++I     I+ I L   G+    G   +L    + +  L + +
Sbjct: 226 PVPALIWCAIVLPVPLTSLITLITGISQIILVSHGVMNIQGDNSLLPISHLTSARLGVAT 285

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG----SYNEKLSI 131
           I +S L+  +S   +++L     R++  +  D L+ LL+ S     L     S   ++ +
Sbjct: 286 IALSPLIVAVSMDAIRQL---NERLALRADYDFLTQLLSRSGLYEHLRNEACSEQRQVGV 342

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  D+DYFK +NDNFGH  GD+V+  ++ ++  + G    + R GGEEF       S + 
Sbjct: 343 ILLDVDYFKSVNDNFGHDAGDRVLEEIARRISPLVGNHGHICRFGGEEFVIVQFDLSPEM 402

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK------EPISTIIYRADQALY 245
              LA  +R+ I   +  +  G ++ +T+S G+A    +      E ++ +I  AD+ LY
Sbjct: 403 IYSLAEGIRQSIVKEKF-LLHGNAVTVTVSLGLAYGQAQPGVEWAETVNRLISAADKNLY 461

Query: 246 VAKKSGRNR 254
           ++K++GRN+
Sbjct: 462 ISKRNGRNQ 470


>gi|309702244|emb|CBJ01561.1| cellulose synthesis regulatory protein (signal transduction
           protein) [Escherichia coli ETEC H10407]
 gi|323937225|gb|EGB33505.1| diguanylate cyclase domain-containing protein [Escherichia coli
           E1520]
          Length = 564

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            +AA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 491 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 551 KQAGRNRV 558


>gi|302339964|ref|YP_003805170.1| diguanylate cyclase [Spirochaeta smaragdinae DSM 11293]
 gi|301637149|gb|ADK82576.1| diguanylate cyclase [Spirochaeta smaragdinae DSM 11293]
          Length = 329

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 4/137 (2%)

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           I+    Y   LS++ FDID+F+Q+N+ +G  +GD ++  L++ +  +       GR GGE
Sbjct: 193 ITRAERYGLPLSLIIFDIDHFRQLNEAYGRTIGDGLLKRLANLVASLLRDSDIFGRTGGE 252

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EFA     + E   A+LA  LR  IE    ++     + +T S GI      E       
Sbjct: 253 EFAVVVPHTDENSTAVLAEKLRGAIEGFPFDL----PMKVTCSFGITSFKKGESWQDFFS 308

Query: 239 RADQALYVAKKSGRNRV 255
           RAD+ L +AK+ GRNRV
Sbjct: 309 RADEGLLLAKQEGRNRV 325


>gi|322419658|ref|YP_004198881.1| PAS/PAC sensor-containing diguanylate cyclase [Geobacter sp. M18]
 gi|320126045|gb|ADW13605.1| diguanylate cyclase with PAS/PAC sensor [Geobacter sp. M18]
          Length = 300

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 11/168 (6%)

Query: 99  RISQLSRIDCLSGLLNHS----------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           R+ +L ++  L GL   +          + +  +  Y+    I+F D+D FK +ND FGH
Sbjct: 132 RVRELEKLALLDGLTQIANRRYLDRELESRLEEMNRYDIPFGILFMDLDDFKTVNDRFGH 191

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+V+ F++  L          GR GGEEF       +      L   LR++ E S +
Sbjct: 192 ETGDRVLQFVAGTLSANSRPFDLYGRWGGEEFVGIIRNVNAANLKHLGQRLRRLAEKSFV 251

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  G  + +TIS G      K+ + T++ RAD  +Y +K +G+NR+ 
Sbjct: 252 -LVKGEKLRVTISIGATMAVKKDTVHTLLQRADSLMYQSKAAGKNRLT 298


>gi|191173333|ref|ZP_03034863.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli F11]
 gi|300994239|ref|ZP_07180794.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1]
 gi|190906450|gb|EDV66059.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli F11]
 gi|300304949|gb|EFJ59469.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1]
 gi|324013467|gb|EGB82686.1| diguanylate cyclase domain protein [Escherichia coli MS 60-1]
          Length = 558

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ LL  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G++ 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGANL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            +AA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 545 KQAGRNRV 552


>gi|319780750|ref|YP_004140226.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166638|gb|ADV10176.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 402

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 84/162 (51%), Gaps = 10/162 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAF-----ISSLGSYNE--KLSIVFFDIDYFKQINDNFGHPVGD 152
           ++  S  D LS LLN   F     ++ LG+  +   +++V  D+D+FK +ND+FGH  GD
Sbjct: 220 VTSKSETDTLSRLLNRGGFTRHAELAVLGALRQGVPVALVIADLDHFKSVNDSFGHASGD 279

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +VI   +  L          GR+GGEEFA    G++   A + A   R       + I  
Sbjct: 280 RVIETFAGFLREAAAAHHVAGRIGGEEFAIILPGTNLAAARLFAEGTRSAF--GALPIDG 337

Query: 213 GPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            P+ +  T S G+AE    E  + ++ RADQALY AK +GR+
Sbjct: 338 LPADNRCTASFGVAELHASEDFADLMRRADQALYQAKNAGRD 379


>gi|307138623|ref|ZP_07497979.1| putative diguanylate cyclase [Escherichia coli H736]
 gi|331642576|ref|ZP_08343711.1| cellulose synthesis regulatory protein [Escherichia coli H736]
 gi|331039374|gb|EGI11594.1| cellulose synthesis regulatory protein [Escherichia coli H736]
          Length = 558

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKL 129
           T+ L+  Y+   +   +++  + +   +  D L+ L N  A      S       +    
Sbjct: 365 TMLLISWYVIRRMASNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARSLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            +AA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 545 KQAGRNRV 552


>gi|323528074|ref|YP_004230226.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Burkholderia sp. CCGE1001]
 gi|323385076|gb|ADX57166.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1001]
          Length = 667

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 93/182 (51%), Gaps = 11/182 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYF 139
           SG+ + E  ++  R++QL+  D L+GL N +A    +       +  E + ++F D+D F
Sbjct: 220 SGTDITEERLAQERLTQLANTDSLTGLANRNAIQDKIRTAIEEAAPGESVGVLFLDLDNF 279

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND++GH  GD++I  +S  +         + RLGG+EF   A   +  E    A   
Sbjct: 280 KKVNDHYGHVFGDRLIRDVSAAIGTCLNEGDTLARLGGDEFIVLAAKGTAHELEATA--- 336

Query: 200 RKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++I+E  +   S G   ++   S GIA    H + + ++I  AD A+YVAK  G+     
Sbjct: 337 QRILERMRTPFSLGLVEVYTGCSIGIARYPEHGDNLESLIRSADTAMYVAKDEGKRTHRV 396

Query: 258 FS 259
           FS
Sbjct: 397 FS 398


>gi|297565096|ref|YP_003684068.1| diguanylate cyclase [Meiothermus silvanus DSM 9946]
 gi|296849545|gb|ADH62560.1| diguanylate cyclase [Meiothermus silvanus DSM 9946]
          Length = 206

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 7/153 (4%)

Query: 110 SGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
           S +++   F+ ++  + E+  L++   DID F  +N N+GH  GDKVIA +   L     
Sbjct: 7   SAVVSRDTFMQTVLGWGEERSLTVAIADIDEFMPVNQNYGHETGDKVIALVQKTLEASLP 66

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIAE 226
           T   V R GG+EFAAA  G S +EA I+  ++R+ + +   + + S P   I +S GIA 
Sbjct: 67  TGCLVTRWGGDEFAAALPGFSPEEALIVLEEIRQHLAKKHDLGLVSLP---IRLSIGIAS 123

Query: 227 -RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              H    S ++  AD+AL  AK+ GR R   +
Sbjct: 124 LPQHVSDPSQLLQAADEALLRAKREGRGRASIY 156


>gi|194445805|ref|YP_002043795.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|197249334|ref|YP_002149495.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197262036|ref|ZP_03162110.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|198245322|ref|YP_002218428.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205357485|ref|ZP_02348051.2| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205357672|ref|ZP_02572454.2| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205359903|ref|ZP_02832991.2| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205360535|ref|ZP_02684370.2| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|194404468|gb|ACF64690.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|197213037|gb|ACH50434.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197240291|gb|EDY22911.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197939838|gb|ACH77171.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205321460|gb|EDZ09299.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205330411|gb|EDZ17175.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205342367|gb|EDZ29131.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205348694|gb|EDZ35325.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|321222478|gb|EFX47550.1| Putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
          Length = 308

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 22/276 (7%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58
           F  IW  H      +   + F  +  S+   +FI ++ F ANI  F +  L P       
Sbjct: 32  FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 91

Query: 59  ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112
                GL  + +  L +V I+I   +   Y   +  ++ +L      ++ LS +D L+GL
Sbjct: 92  NGNEQGLRILYLLALPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 151

Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +     S    ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 152 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 211

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      +  Q+A   A  +R+ + + +I      S+  ++T+S GIA 
Sbjct: 212 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 271

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              +  I   I +AD+ALY AK  GRN ++   D+ 
Sbjct: 272 LTDRN-IGDAIEKADKALYEAKHLGRNHILVSDDMR 306


>gi|170701034|ref|ZP_02892013.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
 gi|170134056|gb|EDT02405.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
          Length = 492

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 92/194 (47%), Gaps = 14/194 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEK 128
           I +S++LG    + L+    + + +  L+R D L+GL N  +F   L             
Sbjct: 300 IAVSVMLG----TQLRRRMRAESELVLLARTDGLTGLNNRRSFGEVLDREWRRARRARSV 355

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187
            S++F D+D FK  ND +GH  GD  +A ++  +      P     R GGEEF      +
Sbjct: 356 FSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTAARYGGEEFVVLLPDT 415

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALY 245
            E  AA +A  +R  I+   +  +     H+T S G+A    +  E   ++I  AD+ALY
Sbjct: 416 PETGAAQIAERIRAAIDELALEHAGSEHGHVTASIGLASWTPEDDEEAGSVIKAADEALY 475

Query: 246 VAKKSGRNRVVCFS 259
            AK +GRN+V  F 
Sbjct: 476 YAKATGRNKVAAFQ 489


>gi|188992319|ref|YP_001904329.1| hypothetical protein xccb100_2924 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167734079|emb|CAP52285.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris]
          Length = 507

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 89/185 (48%), Gaps = 22/185 (11%)

Query: 96  SYNRISQLSRI---DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145
           S NR+  L+     D L+G+ N     ++L    E        LSI F D+D FK++ND 
Sbjct: 317 SENRMRHLAEQASRDALTGVFNRHQLGTALAHEFELATRQAWPLSIAFIDLDDFKRVNDA 376

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKII 203
            GH VGD+V+   +  L  +  T   V R GGEEF    L ++  EAA++  +  L +  
Sbjct: 377 HGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEF-LVILPNTTAEAALMVIERILAETA 435

Query: 204 ENSQINISSGPSIHITISAGIAERCHK------EPISTIIYRADQALYVAKKSGRNRVVC 257
                 +  GP +HIT SAG+A   H       E I  ++  AD  LY +K  GRNRV  
Sbjct: 436 RTPMAQLPGGP-LHITFSAGLA--THGGGDRQFESIEHLLQAADTTLYRSKHRGRNRVTA 492

Query: 258 FSDIE 262
           +   E
Sbjct: 493 YDATE 497


>gi|167587868|ref|ZP_02380256.1| diguanylate cyclase (GGDEF domain) [Burkholderia ubonensis Bu]
          Length = 288

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 15/178 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           + LF ++  + + S  D L+G+ N S F               E LS++  D+D+FK  N
Sbjct: 112 QRLFEAHATLMRSSARDGLTGVYNRSHFNDHFHLLFLQARRQGEPLSLLMVDVDHFKAYN 171

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD  +  +++ L  V   P   V R GGEEFA     +  + A ++A + R+ 
Sbjct: 172 DTFGHVKGDACLIAVANALTGVVRRPADLVARYGGEEFAIVLPNTGARGARLVAEEAREA 231

Query: 203 IENSQINISS-GPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVV 256
           +   ++N+ + GP+  +++S G A     E   P   +I  AD ALY AK +GRNR++
Sbjct: 232 V--LRLNLPTRGPAGRVSVSVGCATASPDELSVP-DALIEAADAALYRAKDAGRNRIM 286


>gi|77459772|ref|YP_349279.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1]
 gi|77383775|gb|ABA75288.1| putative GGDEF domain regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 559

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 11/163 (6%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+G+ N   F   L  Y+          +++  D D+FK+IND  GH  GD V+
Sbjct: 389 LATHDGLTGVYNRRRFDEKLTEYSLLFRRTGRPFALLLIDADHFKRINDTHGHAAGDDVL 448

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSGP 214
             L+  + +   +  FV R GGEEFA      ++ +   I+A  +R  I  +    + GP
Sbjct: 449 RQLAQLIQISIRSTDFVARYGGEEFAVLLPEIAKPDTPDIVAEKIRSAIAEADFP-AVGP 507

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + ++I   +A+     P +T++ RADQ LY AK +GRN+V C
Sbjct: 508 -VTVSIGVSLADPADNTP-TTLVKRADQQLYKAKAAGRNQVAC 548


>gi|300866275|ref|ZP_07110984.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
 gi|300335723|emb|CBN56144.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
          Length = 469

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 97/196 (49%), Gaps = 30/196 (15%)

Query: 84  YISGSILKELFIS--YNRI--SQLSR----IDCLSGLLNH-------SAFISSLGSYNEK 128
           Y++  I+    ++  +NR+  SQL R     D L+G+ N        S F+     +N+ 
Sbjct: 279 YVTKPIVGPELVNRIFNRLERSQLLRSRAETDALTGVANRRRSTQDLSQFLHLADRHNQS 338

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L     D+D FKQ+ND +GH +GD V+  L + L+  FG    V R GGEEF     G +
Sbjct: 339 LCFALLDLDCFKQVNDEYGHAMGDTVLRRLGELLLRTFGGQDVVARWGGEEFVVGMYGMA 398

Query: 189 EQEAAILANDLRKIIENSQINISS-------GPSIHITISAGIAERCHKEPISTIIYR-A 240
           +++A        K IE+  IN  S            ++ SAGIAE          +YR A
Sbjct: 399 KRDAI-------KSIEDVLINWRSEEFVDTDDRKFRVSFSAGIAEYPSDGNDLQALYRAA 451

Query: 241 DQALYVAKKSGRNRVV 256
           D+ALY AK +GR+RV+
Sbjct: 452 DEALYRAKAAGRDRVM 467


>gi|200387621|ref|ZP_03214233.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199604719|gb|EDZ03264.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
          Length = 308

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 22/276 (7%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58
           F  IW  H      +   + F  +  S+   +FI ++ F ANI  F +  L P       
Sbjct: 32  FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 91

Query: 59  ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112
                GL  + +  L +V I+I   +   Y   +  ++ +L      ++ LS +D L+GL
Sbjct: 92  NGNEQGLRILYLLALPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 151

Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +     S    ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 152 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDTVRS 211

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      +  Q+A   A  +R+ + + +I      S+  ++T+S GIA 
Sbjct: 212 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 271

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              +  I   I +AD+ALY AK  GRN ++   D+ 
Sbjct: 272 LTDRN-IGDAIEKADKALYEAKHLGRNHILVSDDMR 306


>gi|323961999|gb|EGB57598.1| diguanylate cyclase domain-containing protein [Escherichia coli
           H489]
          Length = 564

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            +AA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 491 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 551 KQAGRNRV 558


>gi|289435261|ref|YP_003465133.1| GGDEF domain protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171505|emb|CBH28049.1| GGDEF domain protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 375

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 115/235 (48%), Gaps = 21/235 (8%)

Query: 35  FSIFIATVI--FIANIFLF---YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
           FS FIA +I  F A ++ F   + G     G E  +VE L L   S    LL+ Y    I
Sbjct: 140 FSKFIALLILSFPAQLYYFINNFDGGRILQGFE--IVEYLFL---SFATGLLVFYACNYI 194

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQI 142
            K   +    +++ +  D L+ L N   F          S  +K  LS+   DID+FK+I
Sbjct: 195 DKSNLV-IQTLTETAMTDSLTNLPNMRFFTQQFAWIFNKSLKKKAPLSLFIIDIDHFKEI 253

Query: 143 NDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND  GH  G+ V+A  S  L    F       R+GGEEFA         +AA++A+ +R+
Sbjct: 254 NDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVDATQAALIADHIRE 313

Query: 202 IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            IE+++   +   S  +TIS G+A   C      ++   ADQALY AK+SGRN++
Sbjct: 314 EIEHAKFPYTP-TSGQVTISIGVATANCSFSTTESLFEAADQALYQAKQSGRNQI 367


>gi|224372851|ref|YP_002607223.1| sensory box/ggdef domain protein [Nautilia profundicola AmH]
 gi|223589403|gb|ACM93139.1| sensory box/ggdef domain protein [Nautilia profundicola AmH]
          Length = 346

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 12/158 (7%)

Query: 106 IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+ L N   FI +          Y    SI+F DID FK+IND +GH  GD+++  L
Sbjct: 191 IDPLTKLYNRRHFIENFNYFIDLYERYKRPFSIIFLDIDNFKKINDTYGHQKGDEILINL 250

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           S  ++ +        R GGEE       +   EA  +A  LR+ I+  +I I S P   +
Sbjct: 251 SKHIMQMLRNTDLAFRYGGEEIVIILPETELYEAFQIAERLRQSIK-EKIQIKSKP---V 306

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T+S G+      E + + I R D+A+Y AK++G+++V+
Sbjct: 307 TVSMGVGT-YKGEGMFSFIERVDEAVYRAKRAGKDKVI 343


>gi|195873713|ref|ZP_02698435.2| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|195632965|gb|EDX51419.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
          Length = 308

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 126/277 (45%), Gaps = 22/277 (7%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58
           F  IW  H      +   + F  +  S+   +FI ++ F ANI  F +  L P       
Sbjct: 32  FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 91

Query: 59  ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112
                GL  + +  L +V I+I   +   Y   +  ++ +L      ++ LS +D L+GL
Sbjct: 92  NGNEQGLRILYLLALPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 151

Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +     S    ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 152 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 211

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      +  Q+A   A  +R+ + + +I      S+  ++T+S GIA 
Sbjct: 212 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 271

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
              +  I   I +AD+ALY AK  GRN ++   D+  
Sbjct: 272 LTDRN-IGDAIEKADKALYEAKHLGRNHILVSDDMRT 307


>gi|156977361|ref|YP_001448267.1| diguanylate cyclase/phosphodiesterase [Vibrio harveyi ATCC
           BAA-1116]
 gi|156528955|gb|ABU74040.1| hypothetical protein VIBHAR_06147 [Vibrio harveyi ATCC BAA-1116]
          Length = 778

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 123/256 (48%), Gaps = 30/256 (11%)

Query: 29  IYFSIFFSIFIA---TVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLLL 82
           ++  +  S  IA   T+  I  +   Y+ L+P   L+  L E   N    I  +     +
Sbjct: 257 VWLELALSFGIASFCTITLIVLVLYRYV-LSPVSRLDKQLREIEANKRANIEKLDTDDEI 315

Query: 83  GYISG---SILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFFD 135
           G +S     + +EL   Y++  +L+  D L+ L N   F       L   +E++ +++ D
Sbjct: 316 GRLSSRFFDMYEELNNVYHKTKRLAETDHLTQLANRHRFHELASQELAEPSEQIWVIYID 375

Query: 136 IDYFKQINDNFGHPVGDKVIAFLS-------DQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +D FK +ND +GH +GDK++   S        +    + +P F  RL G+EF  A L SS
Sbjct: 376 LDNFKYVNDKYGHELGDKLLQVFSKHIRNACQKFTQQYNSPCFGARLSGDEF--AILLSS 433

Query: 189 EQEAA----ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQA 243
            QE +    + A +L K I N  +  S+  S  +T S GIA+       I+ ++  AD A
Sbjct: 434 NQENSELPDLFAAELLKPINN--LTQSAKNSFPVTASVGIAQYPRDGGDIAKLLSSADAA 491

Query: 244 LYVAKKSGRNRVVCFS 259
           +Y AK++G+N+   +S
Sbjct: 492 MYQAKRAGKNQYAYYS 507


>gi|167039476|ref|YP_001662461.1| diguanylate cyclase [Thermoanaerobacter sp. X514]
 gi|300915421|ref|ZP_07132734.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter sp. X561]
 gi|307725198|ref|YP_003904949.1| GAF sensor-containing diguanylate cyclase [Thermoanaerobacter sp.
           X513]
 gi|166853716|gb|ABY92125.1| diguanylate cyclase [Thermoanaerobacter sp. X514]
 gi|300888481|gb|EFK83630.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter sp. X561]
 gi|307582259|gb|ADN55658.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter sp. X513]
          Length = 554

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 10/172 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y  +++ S  D L+   N   F  +L          +E +S++ FD+D FK IND +GH 
Sbjct: 383 YYEVTKKSITDPLTKTYNRRYFNDALMENIMRADETSEPVSLIMFDLDNFKLINDTYGHL 442

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+V+  ++ ++     +   V R GGEEFA      + ++A ++A  +R  + +  I 
Sbjct: 443 VGDEVLKEVAKRIKNNVRSDDIVARFGGEEFAVILPKLTAEQAYMIAERIRNEVLSRPIR 502

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS-GRNRVVCFS 259
              G  I++TI+ G+A+   K +    +I  AD+ALY   KS GRN++  + 
Sbjct: 503 TDKG-DIYVTITGGVADYPEKADSAEKLISHADRALYAGGKSKGRNKIAIYE 553


>gi|320332688|ref|YP_004169399.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
 gi|319753977|gb|ADV65734.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
          Length = 370

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 6/180 (3%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDI 136
            I L+LG ++G    +     +R+  L+  D L+G  N   F       +E   ++  D+
Sbjct: 183 AIGLILGQLAGQTRLKALAQAHRLRSLAFTDALTGAYNRRQFELDFPRADEA-CLLLLDL 241

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK++ND  GH VGD+V+      L         V RLGGEEF          +A  +A
Sbjct: 242 DHFKRVNDTHGHDVGDRVLQAFVTILREATRPGDDVYRLGGEEFVVLLRDCPPTKAVSVA 301

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E+S    ++ P   +T+S G+     +      + RAD+ LY AK +GRNRV+
Sbjct: 302 ERIRAHVESSLALYAALPGPALTMSGGLVPVGEQA-----LRRADELLYQAKANGRNRVM 356


>gi|239996281|ref|ZP_04716805.1| diguanylate cyclase [Alteromonas macleodii ATCC 27126]
          Length = 586

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 91/178 (51%), Gaps = 16/178 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + + ++ D L+ + N   F       +  +    + LS V FD+D+FK +ND++GHP GD
Sbjct: 403 LREKAQTDSLTKVANRHYFTELASKALDRMSEQQDVLSFVIFDLDHFKSVNDSYGHPTGD 462

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
            V+  + + +          GRLGGEEF     G +E++A  +A  +R  I   QI+ + 
Sbjct: 463 WVLKAVVNAVRKHCRKEDVFGRLGGEEFGLLLPGCNEKKAKEIAECMRNSIR--QIDTAE 520

Query: 212 SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF-----SDIEN 263
           SG +  I+ S GI+     K     +   AD+ALY +KK GRNRV  F     SD+ N
Sbjct: 521 SGFTFDISASFGISSTASSKYQFEALYANADEALYGSKKHGRNRVSVFQVNGESDVGN 578


>gi|237749000|ref|ZP_04579480.1| GGDEF domain-containing protein [Oxalobacter formigenes OXCC13]
 gi|229380362|gb|EEO30453.1| GGDEF domain-containing protein [Oxalobacter formigenes OXCC13]
          Length = 1960

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 17/166 (10%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAF 157
           SR+D ++GLLN S    S+ +     +      ++  DID FK +ND  GH  GD+VI  
Sbjct: 259 SRVDSMTGLLNKSTTEESVKTAIATATSDSIGVLMMIDIDLFKNVNDTLGHLAGDEVIMQ 318

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-----QEAAILANDLRKIIENSQINISS 212
           ++ QL   F    F+GR+GG+EF        +     ++A  L   + ++ EN Q N + 
Sbjct: 319 IARQLRRTFRENDFIGRVGGDEFIVYMQDVKDTVFVYEKAKALCESVEQMFENHQQNYT- 377

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                ITIS GI+        + +  +AD ALY AK +GRN+ V +
Sbjct: 378 -----ITISIGISNTEQANTYNELYRQADVALYNAKANGRNQSVFY 418



 Score = 40.4 bits (93), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 107  DCLSGLLNHSAF---ISSLGSYNEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
            D L+G+ N  AF    SS+   N +    IV  DID FK IND +G   GD+++  ++  
Sbjct: 1541 DVLTGIYNMQAFYDRASSMMRNNPERQYYIVRLDIDRFKVINDLYGLEEGDRLLKTIAGL 1600

Query: 162  LVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
            L          GR+ G+ F A    S E+
Sbjct: 1601 LSDRMKENAAYGRISGDIFCACVAYSREE 1629


>gi|209519830|ref|ZP_03268614.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160]
 gi|209499706|gb|EDZ99777.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160]
          Length = 778

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 92/177 (51%), Gaps = 30/177 (16%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFG 147
           F+  +++++L+  D L+GL    AF++         +   ++S +F DID FK +ND FG
Sbjct: 184 FLLESQLARLAATDPLTGLQTRRAFVTHAQERLDTLAAGARISAIFLDIDSFKSLNDRFG 243

Query: 148 HPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR--- 200
           H VGD    +V   L D++ +  G    V R+GG EF           A +L +DL    
Sbjct: 244 HAVGDHALFEVAQVLKDEVALYHG----VSRIGGGEF-----------AVLLDDDLSHAL 288

Query: 201 KIIENSQINISS--GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++ E  ++ I++   P  H++ S G+AE    E +  ++ RA  AL  AK +GRNRV
Sbjct: 289 RLAERMRVGIAAIKRPDGHLSASFGVAEHRRGESVMGLLDRAGVALLRAKHAGRNRV 345


>gi|91792096|ref|YP_561747.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91714098|gb|ABE54024.1| diguanylate cyclase [Shewanella denitrificans OS217]
          Length = 604

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 85/162 (52%), Gaps = 8/162 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R  QL+  D L+ L N     +   +       +    +I+ FDID+FK++ND +GH VG
Sbjct: 439 RFKQLALTDELTKLANRRHCYAKANTSLKHAIKHRIPFAIISFDIDHFKRVNDQWGHDVG 498

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DKV+  ++     +      +GR+GGEEF      +++++A  +A  +   +  +Q    
Sbjct: 499 DKVLITMAGICTNLMRKSDIIGRVGGEEFLVVLPNANKEQALEIAERIVTSVAQAQWQHL 558

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           + P    TISAG+    ++  ++ ++ +ADQ LY AK +GRN
Sbjct: 559 T-PDTPQTISAGVTSLTNETSLAQLLLKADQGLYSAKSAGRN 599


>gi|309388591|gb|ADO76471.1| diguanylate cyclase [Halanaerobium praevalens DSM 2228]
          Length = 359

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 12/164 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-YNEKL------SIVFFDIDYFKQINDNFGHPV 150
            ++  ++  D L+   N  AF   + S + EKL      ++V  D+D FK INDN+GH  
Sbjct: 197 QKLENIAHRDPLTKKYNRRAFDQEIKSIFKEKLQLQKKITLVLIDVDNFKDINDNYGHDK 256

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  +S +L         + R GG+EFA  +     Q    L    R++      N+
Sbjct: 257 GDEVLVLISQRLETFMPAQSLIARWGGDEFAVISYEDEYQTQLYLEKYYREM-----ENL 311

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           S+     I+ SAG++    K+ +  I  R D+ LY +K+ G+ R
Sbjct: 312 STELGFKISFSAGLSCLNQKDTVKKIFQRVDKLLYESKREGKAR 355


>gi|331663451|ref|ZP_08364361.1| cellulose synthesis regulatory protein [Escherichia coli TA143]
 gi|331059250|gb|EGI31227.1| cellulose synthesis regulatory protein [Escherichia coli TA143]
          Length = 558

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            +AA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 545 KQAGRNRV 552


>gi|296272695|ref|YP_003655326.1| response regulator receiver modulated diguanylate cyclase
           [Arcobacter nitrofigilis DSM 7299]
 gi|296096869|gb|ADG92819.1| response regulator receiver modulated diguanylate cyclase
           [Arcobacter nitrofigilis DSM 7299]
          Length = 290

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 82/159 (51%), Gaps = 6/159 (3%)

Query: 103 LSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           LS  D ++G+LN   F     +      E L  +  DID FK IND FGH VGD VI  +
Sbjct: 130 LSSYDTMTGILNRRKFFELAQNKFEKEKENLFAIMIDIDKFKGINDKFGHHVGDIVIKTI 189

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  +  +       GR+GGEEFA      +E         +R +I+   +NI +  +I  
Sbjct: 190 TTCIEDILPKNSIFGRIGGEEFAIICNFENETNLFNYFEKIRNLIKEQSLNIENN-TIKF 248

Query: 219 TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           TIS GIA+  +    I  ++ RAD+ LY AK++GR++ +
Sbjct: 249 TISIGIAQYNNTFLTIDDLLKRADKMLYKAKETGRDKTI 287


>gi|254501832|ref|ZP_05113983.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
 gi|222437903|gb|EEE44582.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
          Length = 405

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 96/195 (49%), Gaps = 13/195 (6%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRIS----QLSRIDCLSGLLNHSAFISSL----- 122
           V I + ISL+   ISG+    + IS+ +++    + +R D L+G  N   F+  L     
Sbjct: 182 VNIHLMISLIFIAISGAF--SMAISFEQLARNNHEDARRDPLTGTFNRREFLRRLEGQLQ 239

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
            +      ++ FD+D+FKQ+ND FGH  GD+ +  +   +           RLGGEEF  
Sbjct: 240 PATGAHFGLIQFDLDHFKQVNDRFGHVAGDEALVKVCQAIRHHLRRSDCFARLGGEEFGL 299

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-AD 241
                 +++A ++A  +R+++EN     +      ITIS G+     +    T +++  D
Sbjct: 300 LLPNVGQEDAVVIAERIRRLVENQSYEFAPD-GFQITISGGMYHGTGESLTPTDLFKIVD 358

Query: 242 QALYVAKKSGRNRVV 256
             LY +K +GRNR+ 
Sbjct: 359 TGLYTSKNAGRNRIT 373


>gi|17547862|ref|NP_521264.1| hypothetical protein RSc3143 [Ralstonia solanacearum GMI1000]
 gi|17430167|emb|CAD16852.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum GMI1000]
          Length = 459

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 95/179 (53%), Gaps = 11/179 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-SYNE------KLSIVFFDIDYFK 140
           ++ + LF ++  + QLS  D L+G+ N S F   L  +++E        S+V  D+D+FK
Sbjct: 271 TLYRRLFEAHVSLQQLSTHDALTGIYNRSYFNDQLPRAFDEARRRGRPFSLVMIDVDHFK 330

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199
           + ND FGH  GD  +A ++  L  V      F+ R GGEEFA     +  ++A +LA   
Sbjct: 331 RYNDTFGHLKGDGCLAAVASALEGVMPRHTGFIARYGGEEFALVLPDAGPRDALLLAESA 390

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
           R+ + + ++  +  PS ++TISAG A        S   ++  AD  LY AK +GRN VV
Sbjct: 391 REAVLHLRLE-APAPSRYVTISAGCATAAPGSAASLDALVAAADATLYRAKAAGRNLVV 448


>gi|283850594|ref|ZP_06367882.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
 gi|283574165|gb|EFC22137.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
          Length = 579

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 93/199 (46%), Gaps = 19/199 (9%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           LVENL   +   T  L          +EL      ++ LS  D L+GL N      ++ +
Sbjct: 378 LVENLEEKVRQRTQEL------AQTNRELDHKNQALAVLSLTDRLTGLCNRRKIDQAVRA 431

Query: 125 -------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y    S V  D+D FK IND FGH  GD+V+  ++D L+ +      VGR GG
Sbjct: 432 EWRRAKRYGTPFSAVMIDLDNFKDINDRFGHGKGDEVLVRVADILIAMTRETDTVGRWGG 491

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTI 236
           EEF      +  + A  LA ++R+ I  ++      PSI  +T S G+A          I
Sbjct: 492 EEFLLICPQTGLRAAMSLAENIRQEIAATEF-----PSIGGLTASFGLAAFSGDADPRQI 546

Query: 237 IYRADQALYVAKKSGRNRV 255
           + RAD ALY AK  GRNR+
Sbjct: 547 VDRADAALYQAKAKGRNRI 565


>gi|270158442|ref|ZP_06187099.1| sensor histidine kinase [Legionella longbeachae D-4968]
 gi|269990467|gb|EEZ96721.1| sensor histidine kinase [Legionella longbeachae D-4968]
          Length = 721

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 1/136 (0%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +S++  D+D+FK+IND +GH  GD  +  L   L           R GGEEF  A   + 
Sbjct: 568 ISLLMLDLDHFKKINDTYGHDAGDVALKELGKILQEDIRVGDIAARYGGEEFIVAFYNTD 627

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVA 247
           E+     A  +R+ +   Q+   + P   IT+S G+A         + +I  AD+ALY A
Sbjct: 628 EKTIKTRAESIREAVSRLQVKYGAQPVGPITVSIGVAVYPTDGRNTNELIESADKALYFA 687

Query: 248 KKSGRNRVVCFSDIEN 263
           K +G+NR+V +S+I+N
Sbjct: 688 KTNGKNRIVLYSEIDN 703


>gi|209886481|ref|YP_002290338.1| putative diguanylate cyclase [Oligotropha carboxidovorans OM5]
 gi|209874677|gb|ACI94473.1| putative diguanylate cyclase [Oligotropha carboxidovorans OM5]
          Length = 352

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 9/175 (5%)

Query: 101 SQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            + ++ D L+ L N  A                + LS++  DID+FK+ ND +GH VGD+
Sbjct: 176 EERAKTDTLTSLPNRRALEEFFRAAQMRAMEVEDPLSLLMLDIDHFKKFNDTYGHNVGDQ 235

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212
           VI  ++  L           R GGEE  A   G+       +A  +R+ +    +   S+
Sbjct: 236 VIRLIASVLRERVRENDLPARYGGEELIAVLPGADLATCRAVAERIRETVAGCHLTRRST 295

Query: 213 GPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           G S+  I++S G+A+    E ++++I R D+ALY AK SGRN V+   D+ +  C
Sbjct: 296 GESLPDISVSVGVAQFRPGESMASLIERCDRALYKAKASGRNCVITEDDLTDADC 350


>gi|149907569|ref|ZP_01896316.1| hypothetical GGDEF domain family protein [Moritella sp. PE36]
 gi|149809239|gb|EDM69168.1| hypothetical GGDEF domain family protein [Moritella sp. PE36]
          Length = 505

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 76/159 (47%), Gaps = 9/159 (5%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+ + N +A              Y    +I   DID+FK IND+FGH  GDK +  +
Sbjct: 345 LDSLTQVYNRTALDERFKLEFKRWQRYKTNTTIAMVDIDHFKNINDSFGHIAGDKALKIV 404

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L     +  F+ R GGEEF       +  E  ++ + LR  I+N       G  I I
Sbjct: 405 ARALQKSIKSSDFIARFGGEEFVLLLADVAPSEIQVMLDKLRNTIKNIPFRF-KGKQISI 463

Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           TIS G+ +       I     RAD+ALY AK SGR++V+
Sbjct: 464 TISIGVTQFSLDDNEIVDPFERADKALYEAKSSGRDKVI 502


>gi|146338270|ref|YP_001203318.1| putative diguanylate cyclase/phosphodiesterase (EAL)
           [Bradyrhizobium sp. ORS278]
 gi|146191076|emb|CAL75081.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
           [Bradyrhizobium sp. ORS278]
          Length = 789

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 85/171 (49%), Gaps = 12/171 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           RIS L+R D L+ L N  +F   +         + E  +++F D+D FKQ+ND  GHP G
Sbjct: 344 RISHLARYDELTTLPNRVSFRDEIERLLKIPQRHGELSALLFVDLDRFKQVNDTLGHPCG 403

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN-SQIN 209
           D+++  +S++L  +     FV R GG+EF        S  +AA+LA   R+I++  S+  
Sbjct: 404 DQLLCAVSERLRDMLRPEDFVARFGGDEFVVFQRNIRSNDDAAVLA---RRIVDQLSERY 460

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                 + I  S GIA         T++  AD ALY AK  GR     F D
Sbjct: 461 KIDNHLVEIGASVGIAMTAPGISADTLLKNADMALYRAKAEGRGTFCFFRD 511


>gi|153800884|ref|ZP_01955470.1| sensory box/GGDEF family protein [Vibrio cholerae MZO-3]
 gi|124123594|gb|EAY42337.1| sensory box/GGDEF family protein [Vibrio cholerae MZO-3]
          Length = 627

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 18/174 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS--IVFFDIDYFKQINDNFGH 148
           NR+ +LS  D L+ L N   F  ++         Y ++    +   DID+FK+IND FGH
Sbjct: 458 NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGH 517

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+  ++  +        F+ R+GGEEFA     +S +EA  + N +R       +
Sbjct: 518 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVR-------L 570

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +I+S     +T+S G+ + C     S    RAD ALY +K SGRN++   + +E
Sbjct: 571 HIASLHHQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTTME 622


>gi|145224956|ref|YP_001135634.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Mycobacterium gilvum PYR-GCK]
 gi|145217442|gb|ABP46846.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Mycobacterium gilvum PYR-GCK]
          Length = 612

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 97/190 (51%), Gaps = 14/190 (7%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-GSYNE----KLSIV 132
           I+ L   +   +  E  + Y     L+  D L+GL N  A +S L G   E     +S +
Sbjct: 158 IASLFAQVQARVEAETQLRY-----LAEHDDLTGLNNRRALLSHLDGRLAEGQPGPVSAL 212

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           FFD+D  K IND  GH  GD  I  L+++L         + RLGG+EF     G  + EA
Sbjct: 213 FFDLDRLKAINDYLGHTAGDWFIRVLAERLREGADPRALIARLGGDEFVVVPAGPMDGEA 272

Query: 193 A-ILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKS 250
           A  LA+ L+  ++  +++I  G  +  T+S G+A     ++  S ++ RADQA+  AK S
Sbjct: 273 AESLAHQLQSTLKE-RVSI-DGEMLTRTVSIGVAVGIPGQDTTSDLLRRADQAVLTAKNS 330

Query: 251 GRNRVVCFSD 260
           G NRV  F++
Sbjct: 331 GGNRVTVFTE 340


>gi|302344708|ref|YP_003809237.1| diguanylate cyclase [Desulfarculus baarsii DSM 2075]
 gi|301641321|gb|ADK86643.1| diguanylate cyclase [Desulfarculus baarsii DSM 2075]
          Length = 691

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 93/179 (51%), Gaps = 12/179 (6%)

Query: 91  KELFISYN--RISQLSRIDCLSGLLNHSAFISSL------GSY-NEKLSIVFFDIDYFKQ 141
           ++L ++ N  R+S ++  D L+GL     F+ +L        Y +  LS++  D D+FK 
Sbjct: 502 EQLGVAVNSLRLSHMASTDGLTGLFTRRHFVDTLEHELRVARYLHYPLSMLLLDADHFKN 561

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD+V+  L+  +V    +     R+GGEEFA       + +A  LA  +R+
Sbjct: 562 VNDTHGHQAGDEVLRALARVIVENIRSSDTCARIGGEEFAVLLPRCQQDQAFKLAEKIRR 621

Query: 202 IIENSQINISSGPSIHITISAGIAE-RCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
            +    + I +   I +TIS G+A      EP I  +I RAD A+Y +K +GRNR   +
Sbjct: 622 KVGELTV-IYNEKQIKLTISLGVASFNPGDEPSIEEVIRRADLAMYQSKAAGRNRTTVW 679


>gi|284921863|emb|CBG34938.1| cellulose synthesis regulatory protein (signal transduction
           protein) [Escherichia coli 042]
          Length = 564

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            +AA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 491 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 551 KQAGRNRV 558


>gi|195952621|ref|YP_002120911.1| diguanylate cyclase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932233|gb|ACG56933.1| diguanylate cyclase [Hydrogenobaculum sp. Y04AAS1]
          Length = 640

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 9/195 (4%)

Query: 74  ISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSY 125
           +++ I  + GY+  +I + E  +   ++ + S  D L+G  N           +++    
Sbjct: 437 VNMMIPYIKGYLDEAIPVMESKLLMEKLKEQSIKDQLTGFYNRRYIEEAIDPILNNAKRK 496

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            E   ++  D+D+FK+IND +GH VGD V+  ++  +           R GGEEF     
Sbjct: 497 GETTGVLMIDVDHFKEINDKYGHDVGDMVLKTVAQTIKESIRESDIPIRFGGEEFMVLLT 556

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQAL 244
                ++  +A  +RK +EN  I + +  +I  TIS G++E     +     +  AD AL
Sbjct: 557 NVKPGDSESVAEKIRKNMENRVIKLPNNTTIKRTISIGVSEIPTDTDKFWQAVKFADVAL 616

Query: 245 YVAKKSGRNRVVCFS 259
           Y AK+SGRN+VV + 
Sbjct: 617 YKAKESGRNKVVRYQ 631


>gi|153211963|ref|ZP_01947810.1| sensory box/GGDEF family protein [Vibrio cholerae 1587]
 gi|124117039|gb|EAY35859.1| sensory box/GGDEF family protein [Vibrio cholerae 1587]
          Length = 642

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 18/174 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS--IVFFDIDYFKQINDNFGH 148
           NR+ +LS  D L+ L N   F  ++         Y ++    +   DID+FK+IND FGH
Sbjct: 473 NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGH 532

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+  ++  +        F+ R+GGEEFA     +S +EA  + N +R       +
Sbjct: 533 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVR-------L 585

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +I+S     +T+S G+ + C     S    RAD ALY +K SGRN++   + +E
Sbjct: 586 HIASLHHQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTTME 637


>gi|121726400|ref|ZP_01679674.1| sensory box/GGDEF family protein [Vibrio cholerae V52]
 gi|121631148|gb|EAX63523.1| sensory box/GGDEF family protein [Vibrio cholerae V52]
          Length = 321

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 19/172 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ QL+  D L+ L N            +      + LS +  DID FK IND FGH  G
Sbjct: 152 QLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKG 211

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+ FL+     V     F GR+GGEEF      +  + A  LA  +R+         +
Sbjct: 212 DEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIRQ-------RFA 264

Query: 212 SGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
             P    + HI + AG++   H +  I+ I  R+DQALY AK++GRNR   +
Sbjct: 265 EHPFFEQNEHIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 316


>gi|170728152|ref|YP_001762178.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169813499|gb|ACA88083.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
          Length = 659

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 7/178 (3%)

Query: 85  ISGSILKELFISYNRIS--QLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDID 137
           +S + L  L+I+  RI   +++  D L+ L N       L S N+      LS +  DID
Sbjct: 439 VSLTSLAALWINRRRIRWGKIANTDSLTNLYNRRYLSHKLLSLNKPDNDAPLSCILLDID 498

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND++GH VGD+V+  ++   +          R+GGEEF      ++ Q+A+ +A 
Sbjct: 499 LFKVVNDSYGHIVGDEVLVKVATLFINNVREKDICARIGGEEFMILLPNTNLQQASDIAE 558

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           DLR  IE+       G    IT S G+ E   ++  S +    D  LY AK++GRNRV
Sbjct: 559 DLRLKIESLHFASLKGEPFTITSSFGVVEAGKEQSFSELSNAVDLLLYTAKQNGRNRV 616


>gi|146293765|ref|YP_001184189.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
 gi|145565455|gb|ABP76390.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
          Length = 578

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 15/176 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  ++  D L+G  N     + +         +   LSIV FDID FKQ ND +GH +G
Sbjct: 400 QVKAMAETDGLTGCYNRRYLDNQIEKELLYANDHQVPLSIVMFDIDNFKQFNDRYGHVIG 459

Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D+ +  + +    +   P   + R GGEEF         ++A  +A  LR+ I + +I  
Sbjct: 460 DQCLKQIVNATKSILQRPTDTLARYGGEEFMILLPSRHLEDAYKIAEHLRETIIDLKIPH 519

Query: 211 SSGPSIHI-TISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              P   I TISAGI   C   P     +++I RAD+ALY AK +GRNR     +I
Sbjct: 520 EDSPHAGIVTISAGIT--CWHPPERLDTNSLIKRADEALYHAKLTGRNRTETLINI 573


>gi|150388986|ref|YP_001319035.1| diguanylate cyclase [Alkaliphilus metalliredigens QYMF]
 gi|149948848|gb|ABR47376.1| diguanylate cyclase [Alkaliphilus metalliredigens QYMF]
          Length = 512

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 19/162 (11%)

Query: 104 SRIDCLSGLLN-------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           ++ D L+GL N       + AF + +       +I+  DID FK++ND +GHPVGD+V+ 
Sbjct: 352 AKYDGLTGLFNRHTFDTIYEAFYNGIKHEKMDFAILMVDIDNFKEVNDQYGHPVGDEVLR 411

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++  +         + R GGEE      GS+  EA  +A  +RK IE+ +I       I
Sbjct: 412 KMARAMQQSLRDHDVIARYGGEEMIIILKGSNPPEAKGIAERIRKSIESLEIQ-----GI 466

Query: 217 HITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            IT+S G+A    +   K+ + TI   AD+ LY AK+ G+N+
Sbjct: 467 RITVSIGMANFRYDSYEKDELITI---ADKCLYEAKRKGKNQ 505


>gi|262370899|ref|ZP_06064223.1| LOW QUALITY PROTEIN: GGDEF family protein [Acinetobacter johnsonii
           SH046]
 gi|262314261|gb|EEY95304.1| LOW QUALITY PROTEIN: GGDEF family protein [Acinetobacter johnsonii
           SH046]
          Length = 531

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 95/173 (54%), Gaps = 9/173 (5%)

Query: 99  RISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152
           R+  ++ +D L+G+ N  A   +I  L +   + S   ++  DID+FKQ+ND +GH +GD
Sbjct: 356 RLKNIAHLDSLTGVANRYALNEYIKLLENQPTQFSETCLMVIDIDHFKQVNDVYGHLMGD 415

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINIS 211
           +VI F++++L     T   + R GG+EF         + A  +A  +R +I E   ++  
Sbjct: 416 QVIQFVAEKLKENIRTSDLLVRYGGDEFIVLIENVGMERALKIAEKIRSEIYEAKSVDNV 475

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             P + ++IS G+A          ++ +AD+AL+ AK+ G+N+VV +S  E N
Sbjct: 476 RCPDLKVSISIGVA--IGATSWMALLEKADRALFQAKEQGKNKVVAYSVDEVN 526


>gi|229514994|ref|ZP_04404454.1| GGDEF family protein [Vibrio cholerae TMA 21]
 gi|229347699|gb|EEO12658.1| GGDEF family protein [Vibrio cholerae TMA 21]
          Length = 353

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 9/173 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGD 152
           N +  L+  D L+G  N  +  +S   +        L ++  D+D+FK IND FGH  GD
Sbjct: 173 NSLLYLASRDPLTGAHNRLSLTTSFQHFERFSDQTSLCLLVIDLDFFKSINDQFGHDTGD 232

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KV+   +     V G      R+GGEEF       S ++A  +   LR I+  SQ   + 
Sbjct: 233 KVLIETTRLFTQVVGDNNLY-RIGGEEFCVTLFDQSLEQAGRVCERLRAIV--SQHLFAF 289

Query: 213 GPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           G   + +TIS G+ E    + ++ ++  AD  LY AKK+GRN+V  F     N
Sbjct: 290 GEKRVQVTISIGVCEYQAGDQLNDLLKFADMELYRAKKAGRNQVRLFRHASTN 342


>gi|229075753|ref|ZP_04208730.1| Sensory box/GGDEF family protein [Bacillus cereus Rock4-18]
 gi|228707305|gb|EEL59501.1| Sensory box/GGDEF family protein [Bacillus cereus Rock4-18]
          Length = 430

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ ID L+ + N   F   L          +EK++I+ FD+D FK +ND +GH 
Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILEVEWDNVIRNDEKMAIILFDVDNFKTVNDTYGHD 320

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 321 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 379

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             SG S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 380 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCIY 425


>gi|218705448|ref|YP_002412967.1| putative diguanylate cyclase [Escherichia coli UMN026]
 gi|218432545|emb|CAR13438.1| putative diguanylate cyclase [Escherichia coli UMN026]
          Length = 564

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            +AA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 491 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 551 KQAGRNRV 558


>gi|170679992|ref|YP_001743770.1| diguanylate cyclase [Escherichia coli SMS-3-5]
 gi|170517710|gb|ACB15888.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           SMS-3-5]
          Length = 349

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 5/162 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
           NR+  L+  D L+G+ N  A  S L    +     +++  D+D+FK+ ND +GHP GD+ 
Sbjct: 185 NRLDALAHRDPLTGIANRRAMNSILHDAIDNGGSFALIMLDVDFFKRYNDTYGHPAGDRC 244

Query: 155 IAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212
           +  ++D L      +   V R GGEEF      ++  EA  +A  +++ ++ + I + +S
Sbjct: 245 LIQVADALQRSTRQSEDVVVRYGGEEFVIILFNATLPEAETVAARVKQELKLAAIPHQAS 304

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +  +T+S GI      +    II  AD ALY AK+SGRNR
Sbjct: 305 AVNAFVTVSQGITCSAPAKTAEQIISDADAALYRAKESGRNR 346


>gi|166712660|ref|ZP_02243867.1| hypothetical protein Xoryp_14695 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 324

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 15/194 (7%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-- 124
           + +S +++++ ++L +GY     +++  +    + +L+ +D L+GL N      +L    
Sbjct: 133 QGVSTIVVTL-VTLAVGYAFSLRMQDDRVH---LEELASLDALTGLPNRRMLERALTDQI 188

Query: 125 -----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                +N   S++  D+D+FK++ND +GH  GD  ++ L+  L      P  V R GGEE
Sbjct: 189 DQHQPHNRLNSLIILDLDHFKEVNDLYGHAAGDAALSDLATILRFEVRDPYQVFRFGGEE 248

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F       S  E       LRK+I N       GP   IT+S G A    +        R
Sbjct: 249 FVVLLRAGSLAELEAATERLRKVIRNRL----RGPGGRITVSLGAARHDGETHWQDWFSR 304

Query: 240 ADQALYVAKKSGRN 253
           AD ALY+AK  GR+
Sbjct: 305 ADAALYLAKNGGRD 318


>gi|327485915|gb|AEA80321.1| sensory box/GGDEF family protein [Vibrio cholerae LMA3894-4]
          Length = 308

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 19/172 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ QL+  D L+ L N            +      + LS +  DID FK IND FGH  G
Sbjct: 139 QLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKG 198

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+ FL+     V     F GR+GGEEF      +  + A  LA  +R+         +
Sbjct: 199 DEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIRQ-------RFA 251

Query: 212 SGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
             P    + HI + AG++   H +  I+ I  R+DQALY AK++GRNR   +
Sbjct: 252 EHPFFEQNEHIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 303


>gi|293405438|ref|ZP_06649430.1| cellulose synthesis regulatory protein [Escherichia coli FVEC1412]
 gi|298381082|ref|ZP_06990681.1| cellulose synthesis regulatory protein [Escherichia coli FVEC1302]
 gi|291427646|gb|EFF00673.1| cellulose synthesis regulatory protein [Escherichia coli FVEC1412]
 gi|298278524|gb|EFI20038.1| cellulose synthesis regulatory protein [Escherichia coli FVEC1302]
          Length = 569

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 376 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 435

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 436 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 495

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            +AA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 496 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 555

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 556 KQAGRNRV 563


>gi|262275981|ref|ZP_06053790.1| hypothetical protein VHA_002964 [Grimontia hollisae CIP 101886]
 gi|262219789|gb|EEY71105.1| hypothetical protein VHA_002964 [Grimontia hollisae CIP 101886]
          Length = 294

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 99/198 (50%), Gaps = 15/198 (7%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------ 120
           E  +L  +   +  L+ +   S L  +     R+ + + +D L+G+ N    ++      
Sbjct: 78  ETFALYWLQTVVGFLVIWAQTSKLHMML----RLYRHATLDPLTGIYNRRMLLTLAKRDF 133

Query: 121 -SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
            +   ++   S++  D+D FK+IND +GH  GD V+   +  +          GR GGEE
Sbjct: 134 ENTRIHSRPYSVLLMDLDKFKRINDRYGHHAGDLVLQAFTHAVQETQRKSDIFGRFGGEE 193

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINIS--SGPSIHITISAGIA-ERCHKEPISTI 236
           F       SE  A ++A+ +   + + +I +   S P + +T S GI+  R   + +S+I
Sbjct: 194 FILFLPKCSEDNAQLVADRIMTRVRDMEIKVEGLSNP-LKVTTSIGISTSRNQNDDLSSI 252

Query: 237 IYRADQALYVAKKSGRNR 254
           + +ADQALY+AK +GR+R
Sbjct: 253 LTQADQALYIAKNAGRDR 270


>gi|254509795|ref|ZP_05121862.1| response regulator receiver modulated diguanylate cyclase
           [Rhodobacteraceae bacterium KLH11]
 gi|221533506|gb|EEE36494.1| response regulator receiver modulated diguanylate cyclase
           [Rhodobacteraceae bacterium KLH11]
          Length = 466

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 83/166 (50%), Gaps = 16/166 (9%)

Query: 106 IDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+GL N    + +L     +        +++  D+D+FK IND FGH  GD V+   
Sbjct: 294 IDPLTGLHNRRYAMRALDQIAHQALETGRGFAVMLADLDHFKAINDRFGHAAGDLVLTET 353

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIH 217
           + +L        FV R+GGEEF      ++ Q+A   A+ +   I  +  N+     SI 
Sbjct: 354 ARRLRTATNQSGFVARIGGEEFMIGLPDTAPQQALRQADVICDSICQTPFNLPDHATSIP 413

Query: 218 ITISAGI--------AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +TIS G+          R    P++ +I  AD+ALY AKK+GRN+V
Sbjct: 414 VTISVGVKLCTPPDLTWRDEASPVNRLIRSADKALYAAKKAGRNQV 459


>gi|261210734|ref|ZP_05925026.1| GGDEF family protein [Vibrio sp. RC341]
 gi|260840219|gb|EEX66799.1| GGDEF family protein [Vibrio sp. RC341]
          Length = 489

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 9/161 (5%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +QL+  D ++GLLN       L    +++ L+I   DID FKQIND +GH +GDKVI ++
Sbjct: 332 AQLAARDPMTGLLNRRGMEGFLKGKRHSQYLAIAVLDIDDFKQINDTYGHDMGDKVICYI 391

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            +Q+     +   V R GGEEF         EQ   I+      + ++S   +  G    
Sbjct: 392 GEQIETHIRSSDAVARFGGEEFVVYVTAKEQEQIQKIMQRIFDAVCQDSTHILEQG---- 447

Query: 218 ITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
            TIS GI     K+ +S       AD+ LYVAK SG+N++V
Sbjct: 448 FTISGGIEIVESKKALSFEEQFKAADEKLYVAKTSGKNQLV 488


>gi|229515487|ref|ZP_04404946.1| GGDEF family protein [Vibrio cholerae TMA 21]
 gi|229347256|gb|EEO12216.1| GGDEF family protein [Vibrio cholerae TMA 21]
          Length = 489

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 12/188 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSI 131
           + ++L+  +++G +L  L   ++R   +QL+  D ++GLLN     S L    +++ L+I
Sbjct: 306 LVVALVYLFLTG-VLIYLNTRWDRQHYAQLAARDPMTGLLNRRGMESFLKGKRHSQYLAI 364

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQ 190
              DID FKQIND +GH +GD+VI ++ +Q+     +   V R GGEEF         EQ
Sbjct: 365 AVLDIDDFKQINDAYGHGMGDRVICYIGEQIENHIRSSDAVARFGGEEFVVYVTAKEKEQ 424

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAK 248
              I+      +   S + +  G     T+S GI   E         +   AD+ LYVAK
Sbjct: 425 ITRIMQRIFDAVCRESPLILEPG----FTVSGGIEVVESTTDRSFEDLFKAADEKLYVAK 480

Query: 249 KSGRNRVV 256
            SG+N++V
Sbjct: 481 TSGKNQLV 488


>gi|158336701|ref|YP_001517875.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158306942|gb|ABW28559.1| diguanylate cyclase (GGDEF domain), putative [Acaryochloris marina
           MBIC11017]
          Length = 368

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 93/178 (52%), Gaps = 13/178 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEK--LSIVFFDIDYFKQIN 143
           K+L  +  R++ L+ +D L+ L N  AF  +L         EK  L+++  DIDYFK  N
Sbjct: 172 KQLEEANKRLTYLASVDELTQLPNRRAFTEALNREWRRMAREKSSLALIMIDIDYFKVYN 231

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GHPVGD  +  ++  +      P     R GGEEFA     ++   A  +A ++R  
Sbjct: 232 DTYGHPVGDSCLFQVARVIHTCVRRPADLPSRYGGEEFAVILPNTTLSGAIHVAENMRLS 291

Query: 203 IENSQI---NISSGP--SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++   I   N ++GP  S+ + +++ I +    E  + ++  ADQALY AK  GRNRV
Sbjct: 292 VQRLMIPHKNSANGPYVSLSLGVASVIPDIQEMESETPLLLAADQALYKAKAEGRNRV 349


>gi|110642061|ref|YP_669791.1| hypothetical protein ECP_1889 [Escherichia coli 536]
 gi|110343653|gb|ABG69890.1| hypothetical protein YedQ [Escherichia coli 536]
          Length = 564

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ LL  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 371 TMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G++ 
Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGANL 490

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            +AA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 491 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 551 KQAGRNRV 558


>gi|333004063|gb|EGK23597.1| cellulose synthesis regulatory protein [Shigella flexneri K-272]
 gi|333017836|gb|EGK37143.1| cellulose synthesis regulatory protein [Shigella flexneri K-227]
          Length = 558

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ LL  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G++ 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGANL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            +AA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 545 KQAGRNRV 552


>gi|229522266|ref|ZP_04411682.1| sensory box/GGDEF family protein [Vibrio cholerae TM 11079-80]
 gi|229340251|gb|EEO05257.1| sensory box/GGDEF family protein [Vibrio cholerae TM 11079-80]
          Length = 642

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 18/174 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS--IVFFDIDYFKQINDNFGH 148
           NR+ +LS  D L+ L N   F  ++         Y ++    +   DID+FK+IND FGH
Sbjct: 473 NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGH 532

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+  ++  +        F+ R+GGEEFA     +S +EA  + N +R       +
Sbjct: 533 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVR-------L 585

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +I+S     +T+S G+ + C     S    RAD ALY +K SGRN++   + +E
Sbjct: 586 HIASLHHQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTTME 637


>gi|204926950|ref|ZP_03218152.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204323615|gb|EDZ08810.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 308

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 124/276 (44%), Gaps = 22/276 (7%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58
           F  IW  H      +   + F  +  S+   +FI ++ F ANI  F +  L P       
Sbjct: 32  FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 91

Query: 59  ----YGLE--YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112
                GL   Y+LV  +  + I   I       +  ++ +L      ++ LS +D L+GL
Sbjct: 92  NGNEQGLRILYLLVLPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 151

Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +     S    ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 152 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 211

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN--ISSGPSIHITISAGIAE 226
              V R GGEEF      +  Q+A   A  +R+ + + +I    +   + ++T+S GIA 
Sbjct: 212 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 271

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              +  I   I +AD+ALY AK  GRN ++   D+ 
Sbjct: 272 LTDRN-IGNAIEKADKALYEAKHLGRNHILVSDDMR 306


>gi|169826288|ref|YP_001696446.1| transmembrane protein [Lysinibacillus sphaericus C3-41]
 gi|168990776|gb|ACA38316.1| probable transmembrane protein [Lysinibacillus sphaericus C3-41]
          Length = 520

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 81/157 (51%), Gaps = 10/157 (6%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           S +D L+G+ N     + L  + E     +I+  D+D+FK +ND +GH VGDKV+ FL+ 
Sbjct: 363 STVDPLTGVTNRRTMDAMLAEWFENRVPHAIILLDLDHFKSVNDTYGHAVGDKVLQFLAK 422

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            +  V        R GGEEF      ++  EA  +A  LR  +  +     S     +T+
Sbjct: 423 HMQSVAREGDVCCRYGGEEFVMLLPNTTVIEAEQVAEQLRGNLAET----DSPCGRPVTL 478

Query: 221 SAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           SAGIA        P  T+I  AD ALY AK++GRN+V
Sbjct: 479 SAGIALYPEMAATP-ETLIEAADGALYEAKQAGRNQV 514


>gi|149184365|ref|ZP_01862683.1| response regulator [Erythrobacter sp. SD-21]
 gi|148831685|gb|EDL50118.1| response regulator [Erythrobacter sp. SD-21]
          Length = 209

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 77/155 (49%), Gaps = 6/155 (3%)

Query: 107 DCLSGLLNHSAFISSL--GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI----AFLSD 160
           D L+GL N          G   +   ++  D+D FK IND FGH  GD+V+    + + +
Sbjct: 51  DPLTGLYNRRKLFEERDDGQEGQLRQVLMIDLDRFKSINDRFGHAAGDRVLVATASAIRN 110

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            L  + GT     RLGGEEF A       ++A  +A +LR+ I    ++ S   S   + 
Sbjct: 111 CLERMDGTSDLAFRLGGEEFVAILDSEDFEKARSIAEELRRDIARIALDESHTGSFETSA 170

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S G+A     E +  +++RAD A Y AK  GRNRV
Sbjct: 171 SIGLASWHPGEKLDDVLHRADAACYKAKNEGRNRV 205


>gi|229542030|ref|ZP_04431090.1| diguanylate cyclase [Bacillus coagulans 36D1]
 gi|229326450|gb|EEN92125.1| diguanylate cyclase [Bacillus coagulans 36D1]
          Length = 346

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 12/158 (7%)

Query: 107 DCLSGLLNH---SAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N     A++ +   + +K     S++FFDIDYFKQ+ND FGH  GD+V+    
Sbjct: 193 DMLTGIANRRQVQAWLDAAVKHADKTGTSFSVIFFDIDYFKQVNDQFGHQTGDEVLKEFV 252

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
                V     ++GR GGEEF         Q     A +L + ++ S    S G +  ++
Sbjct: 253 RLSSRVISANDYIGRWGGEEFIIITKDELPQ-----AEELAEYLKASISRHSFGHAGKLS 307

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            S G+      +   TI+ R D+ LY +K  GRNR+  
Sbjct: 308 ASFGVTAYTPGDTAETIVRRVDEGLYKSKGQGRNRITV 345


>gi|37675986|ref|NP_936382.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37200526|dbj|BAC96352.1| GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 451

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 12/166 (7%)

Query: 96  SYNRISQLSRI------DCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNF 146
           S  R  QL  +      D L+GL N   F  +L      + + +++  D D FK IND F
Sbjct: 289 SKTRKQQLDEVSSEVIKDELTGLHNRKIFNDTLFKDTLEDSQYTVIAIDGDGFKNINDTF 348

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+VI  +   +   F    F+ R GG+EF A       ++A+ L   L++ ++NS
Sbjct: 349 GHHVGDEVICQVGKSMKATFRRGDFLIRTGGDEFLAILPDCDHRKASELVGKLKQHLKNS 408

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            +       + I +SAG+A R   E +  ++ +AD+ALY  K+S R
Sbjct: 409 TLPY---KDLTIAVSAGVATRAQGETLQELMMQADEALYKVKESRR 451


>gi|320158129|ref|YP_004190507.1| putative two-component response regulator and GGDEF family protein
           YeaJ [Vibrio vulnificus MO6-24/O]
 gi|319933441|gb|ADV88304.1| putative two-component response regulator and GGDEF family protein
           YeaJ [Vibrio vulnificus MO6-24/O]
          Length = 451

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 12/166 (7%)

Query: 96  SYNRISQLSRI------DCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNF 146
           S  R  QL  +      D L+GL N   F  +L      + + +++  D D FK IND F
Sbjct: 289 SKTRKQQLDEVSSEVIKDELTGLHNRKIFNDTLFKDTLEDSQYTVIAIDGDGFKNINDTF 348

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+VI  +   +   F    F+ R GG+EF A       ++A+ L   L++ ++NS
Sbjct: 349 GHHVGDEVICQVGKSMKATFRRGDFLIRTGGDEFLAILPDCDHRKASELVGKLKQHLKNS 408

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            +       + I +SAG+A R   E +  ++ +AD+ALY  K+S R
Sbjct: 409 TLPY---KDLTIAVSAGVATRAQGETLQELMMQADEALYKVKESRR 451


>gi|309779153|ref|ZP_07673917.1| diguanylate cyclase [Ralstonia sp. 5_7_47FAA]
 gi|308922074|gb|EFP67707.1| diguanylate cyclase [Ralstonia sp. 5_7_47FAA]
          Length = 448

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 8/172 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +L  + +  S  +R D L+G LN      +L          N  L I F DID FK IND
Sbjct: 276 QLRKALDMASASARHDLLTGALNRKGLEEALEREVARAARQNTALCIAFLDIDDFKSIND 335

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD  ++ L+            + R GGEEF      +S +E       L++ + 
Sbjct: 336 THGHSFGDDALSHLAQVARESMRPQDTLARFGGEEFVILMPDTSLEEGVQTIVRLQRAL- 394

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +  ++    + IT SAG+AE    EP    I RAD+A+Y AK++G+N+VV
Sbjct: 395 TQRFFVAGDTRLFITFSAGVAEVGKDEPPMAAIQRADRAMYQAKRAGKNKVV 446


>gi|300939121|ref|ZP_07153809.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
 gi|300455962|gb|EFK19455.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
          Length = 350

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 5/162 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
           NR+  L+  D L+G+ N  A  S L    +     +++  D+D+FK+ ND +GHP GD+ 
Sbjct: 186 NRLDALAHRDPLTGIANRRAMNSILHDAIDNGGSFALIMLDVDFFKRYNDTYGHPAGDRC 245

Query: 155 IAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212
           +  ++D L      +   V R GGEEF      ++  EA  +A  +++ ++ + I + +S
Sbjct: 246 LIQVADALQRSTRQSEDVVVRYGGEEFVIILFNATLPEAETVAARVKQELKLAAIPHQAS 305

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +  +T+S GI      +    II  AD ALY AK+SGRNR
Sbjct: 306 AVNAFVTVSQGITCSAPAKTAEQIISDADAALYRAKESGRNR 347


>gi|294010694|ref|YP_003544154.1| putative diguanylate cyclase [Sphingobium japonicum UT26S]
 gi|292674024|dbj|BAI95542.1| putative diguanylate cyclase [Sphingobium japonicum UT26S]
          Length = 395

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 119/273 (43%), Gaps = 33/273 (12%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVI-----------FIANIFLFYIGL- 55
            LS+  C  + L +F   T +    +  S+  AT++           + A  F F + L 
Sbjct: 110 LLSVLWCTLQGLLAF---TIISSGDLVLSVLSATLVMAMIGPICARNYAAPRFAFLLVLL 166

Query: 56  --TPFYGLEYILVENLSLVIISITISLLLGYIS------GSILKELFISYNRISQLSRID 107
              PF        E   LVI+ IT   LLG +        S+L+ L  +      L+  D
Sbjct: 167 CDIPFVTGAVTSAEPWLLVILPITPPFLLGAMQIIMTFHRSMLQTL-AAQAHARHLAEHD 225

Query: 108 CLSGLLNHSAFISSLG----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            L+G+LN      +L         +++++  D+D FK++ND FGH  GD ++  ++ +L 
Sbjct: 226 WLTGVLNRQGMDQALSRIVPDAERQMALISIDLDGFKEVNDRFGHGAGDLLLTQVARRLR 285

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
              G    + R+GG+EF     G    +   LA+  R I   S+    +G S+   + A 
Sbjct: 286 DALGDDDLLARMGGDEFMVVVRGMVPDQVGPLAD--RLIAAISRHAYETGQSVPARVGAS 343

Query: 224 IAERCHKEPISTII---YRADQALYVAKKSGRN 253
           I   C  E  +  +    RAD+ALY AK +G+ 
Sbjct: 344 IGFACLPEDAANTVELRLRADEALYAAKDAGKG 376


>gi|268608109|ref|ZP_06141837.1| diguanylate cyclase/phosphodiesterase [Ruminococcus flavefaciens
           FD-1]
          Length = 503

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 98/203 (48%), Gaps = 20/203 (9%)

Query: 70  SLVIISITISLL-LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           +LVII I ++++   +   S  KE+F       +LS  D L+ ++N  AF +        
Sbjct: 309 ALVIILIALAMIWFLHKRESEEKEVF------ERLSTYDPLTHIMNRRAFDARAQKLLEK 362

Query: 125 -YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
              EK + +F DID+FKQ+ND +GH  GD+++   S  L   FG      R GG+EF   
Sbjct: 363 PKQEKYTFMFVDIDFFKQVNDRYGHEAGDRLLKEFSIALRNTFGRCGLTARYGGDEFVVL 422

Query: 184 ALGSSEQEAAILANDLRK-----IIENSQINISSGPSIHITISAGIAERCHK-EPISTII 237
             G +  E   + ++LR      II++ Q   +     H+  SAGIA         + ++
Sbjct: 423 IKGKTRSEVNKMVDELRYTLGRIIIDDPQ--STEEERFHVHFSAGIAVYPDDARSFAQLL 480

Query: 238 YRADQALYVAKKSGRNRVVCFSD 260
             AD ALY  K++GRN    F +
Sbjct: 481 RCADDALYKVKEAGRNGYRWFGE 503


>gi|291614235|ref|YP_003524392.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1]
 gi|291584347|gb|ADE12005.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1]
          Length = 304

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 94/183 (51%), Gaps = 12/183 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDID 137
           IS   + +  ++  RI  LS  D L+GL N   F   L +           LS V FD+D
Sbjct: 120 ISHHNITQRKLAEERIEFLSLHDPLTGLANRRHFNQFLNNAWRRSSRSRSLLSFVMFDLD 179

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILA 196
           +FK  ND  GH  GD+ +  +   L    G P  +  R GGEEF     G+  ++AA +A
Sbjct: 180 HFKDYNDELGHLAGDECLIKVGQVLRAAAGRPGDLAVRYGGEEFGLLLEGTCLEDAAKIA 239

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI--IYRADQALYVAKKSGRNR 254
           + +R+ +   ++++    +  IT+SAG+A    +   S I  I  AD+ALY AK+ GRNR
Sbjct: 240 DAIRQNVH--ELDMRYRKTRLITVSAGVASVIPEGEQSEIFLIREADKALYRAKQQGRNR 297

Query: 255 VVC 257
           VVC
Sbjct: 298 VVC 300


>gi|170516892|gb|ACB15338.1| Dgc2 [Salmonella enterica]
          Length = 331

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 118/250 (47%), Gaps = 20/250 (8%)

Query: 32  SIFFSIFIATVIFIANIFLFYI-GLTPF----------YGLEYILVENLSLVIISITISL 80
           S+   +FI ++ F ANI  F +  L P            GL  + +  L +V I+I   +
Sbjct: 81  SLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWLNDNEQGLRILYLLALPMVGIAIQHVI 140

Query: 81  LLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFF 134
              Y   +  ++ +L      ++ LS +D L+GL N     + L +     S    ++  
Sbjct: 141 QKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGLYNRRGLQNRLDTLQAPGSHEHYVLLL 200

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK  ND++GH +GD+ +  +S  +     +   V R GGEEF      +  Q+A  
Sbjct: 201 DIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTTAEPQQARA 260

Query: 195 LANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            A  +R+ + + +I      S+  ++T+S GIA    +  I   I +AD+ALY AK  GR
Sbjct: 261 TAERIRQEVYDLKIPHMFNESVATNVTVSIGIAPLTDRN-IGDAIEKADKALYEAKHLGR 319

Query: 253 NRVVCFSDIE 262
           N ++   D+ 
Sbjct: 320 NHILVSDDMR 329


>gi|114154899|sp|Q83KM9|YEDQ_SHIFL RecName: Full=Putative cellulose synthesis regulatory protein
          Length = 569

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ LL  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 376 TMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 435

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G++ 
Sbjct: 436 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGANL 495

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            +AA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 496 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 555

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 556 KQAGRNRV 563


>gi|75909377|ref|YP_323673.1| response regulator receiver modulated diguanylate cyclase [Anabaena
           variabilis ATCC 29413]
 gi|75703102|gb|ABA22778.1| response regulator receiver modulated diguanylate cyclase [Anabaena
           variabilis ATCC 29413]
          Length = 344

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 94/185 (50%), Gaps = 17/185 (9%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           + K+L  +   +  L+ +D L+GL N   F + L +           LS++  DIDYFK 
Sbjct: 160 VYKQLEAANMALQHLANVDGLTGLANRRRFDNYLNTQWINLVQKGAPLSLILCDIDYFKF 219

Query: 142 INDNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            ND +GHP GD    KV A LS +          V R GGEEFA     +  + A  +A+
Sbjct: 220 YNDQYGHPAGDICLQKVGAVLSYK---AQKHQDLVARYGGEEFAVIMPYTHAKGAIYVAH 276

Query: 198 DLRKIIENSQI-NISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            ++  + + QI +  S  S HIT+S G+A      +   S +I  AD+ALY AK+SGR+R
Sbjct: 277 TIQTSVRDLQITHDKSAVSQHITLSMGVATITPTWESSPSDLIAAADKALYKAKESGRDR 336

Query: 255 VVCFS 259
           +  + 
Sbjct: 337 ICQWK 341


>gi|88860137|ref|ZP_01134776.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Pseudoalteromonas tunicata D2]
 gi|88818131|gb|EAR27947.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Pseudoalteromonas tunicata D2]
          Length = 527

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 92/178 (51%), Gaps = 23/178 (12%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +LS +D L+G+ N  AF ++             K+ ++  DIDYFK  ND +GH  GD
Sbjct: 343 LEKLSLVDALTGISNRRAFDTTFELACQNAARSQSKVGLILCDIDYFKPYNDFYGHQKGD 402

Query: 153 KVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINI 210
           + +  ++  L V +  +     R GGEEF      SSE E  ++A  ++  I+  + ++ 
Sbjct: 403 ETLTAVAQGLAVTITRSTDLAARYGGEEFVVLLSHSSEDEIILIAEKIQIAIKTLAIVHQ 462

Query: 211 SSGPSIHITISAGIA---------ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            S  + H+T+S G A          +C K     ++ +AD+ALY AKK+GRN+ VC S
Sbjct: 463 KSAVADHVTLSMGTALLNFNNKKTGQCKKH----LLKQADEALYKAKKAGRNQ-VCHS 515


>gi|330720794|gb|EGG99007.1| diguanylate cyclase [gamma proteobacterium IMCC2047]
          Length = 633

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/189 (35%), Positives = 92/189 (48%), Gaps = 16/189 (8%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLS 130
           T   LLG I+     E      ++ +   ID L+G+   S F+  LG      S  E +S
Sbjct: 447 TNQALLGEIAARRQLE-----EKLREQINIDSLTGVYGRSYFLQ-LGNLEFKRSQREGVS 500

Query: 131 I--VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +  V  DID FK IND +GH  GD V+   +             GRLGGEEFA    G  
Sbjct: 501 LFAVMIDIDLFKNINDTYGHSAGDAVLKRFALVCQECLREIDIFGRLGGEEFALVVAGVD 560

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247
           E EA  + + +R  +E +++    G  I +T S G A      E +  I+ RAD+ALY A
Sbjct: 561 ESEAYEICDRIRVSLEKTEVVTGEG-VIKLTASFGCAALEEGDEGLDAILSRADKALYEA 619

Query: 248 KKSGRNRVV 256
           K+ GRN+VV
Sbjct: 620 KEKGRNQVV 628


>gi|328543429|ref|YP_004303538.1| diguanylate cyclase with GGDEF motif; membrane protein [polymorphum
           gilvum SL003B-26A1]
 gi|326413174|gb|ADZ70237.1| Diguanylate cyclase with GGDEF motif; putative membrane protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 390

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 6/155 (3%)

Query: 106 IDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           ID L+G LN  +F    G     S + + + +  D+D+FK +ND  GH  GD+V+   S 
Sbjct: 222 IDYLTGALNRRSFELHAGQALRQSSSVRRAFLLLDLDHFKAVNDTLGHDAGDRVLVDFSR 281

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
           ++    G     GR+GG+EFA     S    A  LA DL +++    +    G    +++
Sbjct: 282 EVRSRVGAGACFGRIGGDEFALLVPVSDALAAERLAEDLCRLVSGMTVASPDG-DWPLSV 340

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S GIA     + +  ++  AD+ALY AK +GR+RV
Sbjct: 341 SIGIAMAGPADDLEQLMRWADRALYAAKAAGRSRV 375


>gi|325272364|ref|ZP_08138762.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas sp. TJI-51]
 gi|324102489|gb|EGB99937.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas sp. TJI-51]
          Length = 328

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 92/166 (55%), Gaps = 11/166 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+ ID L+   N   F     ++  S  E    L+ +  DID FKQIND++GH  GD
Sbjct: 163 LQRLATIDVLTQSSNRRHFFECAQAAFDSARENGTPLAFLLLDIDDFKQINDSYGHQEGD 222

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  ++D    V       GR+GGEEFAA   G S + A  +A  L++ I+  +++ S 
Sbjct: 223 QVLQHIADSGKAVLRRGDLFGRIGGEEFAAVFPGCSAELAGQIAERLQRQIQ--RLSFSH 280

Query: 213 GPSIH-ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
           G   + +T+S G+     ++  + ++  RAD A+Y AK+ G+N++V
Sbjct: 281 GAHTYGVTVSQGLTGLTAEDVALDSLYARADAAMYQAKRQGKNQIV 326


>gi|255321493|ref|ZP_05362651.1| ggdef domain protein [Campylobacter showae RM3277]
 gi|255301349|gb|EET80608.1| ggdef domain protein [Campylobacter showae RM3277]
          Length = 511

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 8/160 (5%)

Query: 104 SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S+ D L+      A +  LG         N   ++ FFDID+FK IND +GH  GD +IA
Sbjct: 350 SKEDFLTKTATKKALMEELGRLEIDFLQQNADYAVCFFDIDHFKNINDIYGHDAGDVIIA 409

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +   L        FV R GGEEF     G    ++   A+ +R +++NS+  +     I
Sbjct: 410 SVGKTLRGNSREVDFVARYGGEEFVVLLPGFDIAQSIEFADKVRDVLKNSKF-LYKDERI 468

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +T+S G+A R   +  + ++  +D+ LY AK++GR++V+
Sbjct: 469 SVTVSCGVAIRSQNQSQAAVLEASDKMLYQAKQNGRDQVM 508


>gi|148979908|ref|ZP_01815766.1| GGDEF family protein [Vibrionales bacterium SWAT-3]
 gi|145961512|gb|EDK26814.1| GGDEF family protein [Vibrionales bacterium SWAT-3]
          Length = 431

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 20/167 (11%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDK 153
           S+++  D L+G+LN  A    L   ++       KLS+++ DIDYFK +ND +GH +GD 
Sbjct: 271 SEMAHRDELTGILNRHAIRDWLKMQSQHVKQGHGKLSMLYLDIDYFKNVNDKYGHQMGDH 330

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQIN 209
           ++   S  +         + R GGEEF        LG ++++A  +      ++ +  + 
Sbjct: 331 ILREFSMVVGSAISPTDKLVRWGGEEFIVFCPETDLGEAQRKAEKIL-----LLVSQHLW 385

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +   P   +T S G+AE   +E ++  I RAD+ALY AK SGRN+V+
Sbjct: 386 VHGDP---LTCSIGVAE-MKQERVTETIARADEALYQAKHSGRNQVI 428


>gi|16763349|ref|NP_458966.1| hypothetical protein STY4904 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29144827|ref|NP_808169.1| hypothetical protein t4594 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213163690|ref|ZP_03349400.1| hypothetical protein Salmoneentericaenterica_28227 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213428406|ref|ZP_03361156.1| hypothetical protein SentesTyphi_24409 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213581134|ref|ZP_03362960.1| hypothetical protein SentesTyph_07976 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213650122|ref|ZP_03380175.1| hypothetical protein SentesTy_24448 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213859941|ref|ZP_03385645.1| hypothetical protein SentesT_26751 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289828940|ref|ZP_06546658.1| hypothetical protein Salmonellentericaenterica_20593 [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|25512874|pir||AF1071 probable membrane protein STY4904 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16505658|emb|CAD03389.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29140466|gb|AAO72029.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 354

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 118/250 (47%), Gaps = 20/250 (8%)

Query: 32  SIFFSIFIATVIFIANIFLFYI-GLTPF----------YGLEYILVENLSLVIISITISL 80
           S+   +FI ++ F ANI  F +  L P            GL  + +  L +V I+I   +
Sbjct: 104 SLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWLNGNEQGLRILYLLALPMVGIAIQHVI 163

Query: 81  LLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFF 134
              Y   +  ++ +L      ++ LS +D L+GL N     + L +     S    ++  
Sbjct: 164 QKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGLYNRRGLQNRLDTLQAPGSHEHYVLLL 223

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK  ND++GH +GD+ +  +S  +     +   V R GGEEF      +  Q+A  
Sbjct: 224 DIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTTAEPQQARA 283

Query: 195 LANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            A  +R+ + + +I    +   + ++T+S GIA    +  I   I +AD+ALY AK  GR
Sbjct: 284 TAERIRQEVYDLKIPHMFNESVATNVTVSIGIAPLTDRN-IGDAIEKADKALYEAKHLGR 342

Query: 253 NRVVCFSDIE 262
           N ++   D+ 
Sbjct: 343 NHILVSDDMR 352


>gi|220904032|ref|YP_002479344.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868331|gb|ACL48666.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 340

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 86/198 (43%), Gaps = 32/198 (16%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQIND 144
           EL    ++  QLS ID L+GLLN  AF+       E L       S++  DID+FK +ND
Sbjct: 134 ELTRLSHKYKQLSFIDPLTGLLNRRAFMVKAEKTLELLREEGLPASVLLADIDHFKAVND 193

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+   S  +           R GGEEF     G    EA  L   +R  +E
Sbjct: 194 TYGHACGDEVLVRFSRCISSFLREQDLCCRYGGEEFVILLAGEELAEACELGEKIRSAVE 253

Query: 205 NS------------------QINISSGPSIHITISAGIAERCHK-------EPISTIIYR 239
            +                  Q +I     + IT+S G++  C         + +   I  
Sbjct: 254 QTVMDEAAMLYCIQARSREGQASIPHPVPLRITVSLGVSRLCRDNVSCSLLQQLEAGIAE 313

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD+ LY AK +GRN VVC
Sbjct: 314 ADRCLYRAKYNGRNSVVC 331


>gi|221067871|ref|ZP_03543976.1| diguanylate cyclase [Comamonas testosteroni KF-1]
 gi|220712894|gb|EED68262.1| diguanylate cyclase [Comamonas testosteroni KF-1]
          Length = 400

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 112/248 (45%), Gaps = 30/248 (12%)

Query: 28  MIYFSIFFSIF----IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           +++ SI F+++     A +  +    L Y+  +P++ L    V   S +   +  ++ + 
Sbjct: 154 LLWLSIIFTVYNLTRPALIWLLGYTDLRYLPSSPYWILTLYSVLGFSFLFTVVMTAIAVK 213

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136
                + KE              D L+ LLN  +F       ++ + SY   ++++  DI
Sbjct: 214 ETVDKLRKE-----------RDFDALTKLLNRRSFQEHAQRHLTDMRSY--PMAMLACDI 260

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND +GH  GD V+  ++  L         V R GGEEF       + QEA  +A
Sbjct: 261 DHFKRINDTWGHERGDMVLQLVATTLQNNVREHDLVARFGGEEFVLLLASITLQEAEFIA 320

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV- 255
             +R  + +    + + P   +T+S G++           +  ADQ LY AK +GR+RV 
Sbjct: 321 QRIRSDLGSKNTVLPNAPK--LTMSFGVSLITKPSQFEQAMKEADQLLYQAKNAGRDRVH 378

Query: 256 ---VCFSD 260
              VC+ D
Sbjct: 379 VSGVCYQD 386


>gi|262169201|ref|ZP_06036894.1| sensory box/GGDEF family protein [Vibrio cholerae RC27]
 gi|262022482|gb|EEY41190.1| sensory box/GGDEF family protein [Vibrio cholerae RC27]
          Length = 308

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 19/172 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ QL+  D L+ L N            +      + LS +  DID FK IND FGH  G
Sbjct: 139 QLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKG 198

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+ FL+     V     F GR+GGEEF      +  + A  LA  +R+         +
Sbjct: 199 DEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIRQ-------RFA 251

Query: 212 SGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
             P    + HI + AG++   H +  I+ I  R+DQALY AK++GRNR   +
Sbjct: 252 EHPFFEQNEHIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 303


>gi|114047368|ref|YP_737918.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113888810|gb|ABI42861.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 342

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 10/177 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
           G  ++ L      +S  +  D L+ L N  A+       I        + S++  DID F
Sbjct: 162 GQEVQNLKAEMENLSLAAMTDQLTSLHNRRAYEIAIQDHIHRAEEQQTRCSLLLIDIDRF 221

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND +GH VGDKV+A+++  L        FV R GGEEF      +   +A  +A  L
Sbjct: 222 KLFNDTYGHQVGDKVLAYVALALKQCVRGDDFVARYGGEEFVVLLPNTHFHDALQVAETL 281

Query: 200 RKIIENSQINISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           R+ I   ++ I     +    IT+S G+A     +   T+  RAD+ALY AK  GRN
Sbjct: 282 RERISERRLAIGKDKKLSLGAITVSIGLASLQKGDDAETLFSRADKALYEAKSDGRN 338


>gi|312960670|ref|ZP_07775176.1| diguanylate cyclase [Pseudomonas fluorescens WH6]
 gi|311285196|gb|EFQ63771.1| diguanylate cyclase [Pseudomonas fluorescens WH6]
          Length = 388

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 12/176 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQ 141
           + +++  ++N  +  ++ D L+GL+N  AF        +    + + L  +  D+D+FKQ
Sbjct: 214 LTRQMEHAHNISTHAAQTDELTGLMNRRAFFEHAQLLYAQCRHHQQPLCALMMDMDHFKQ 273

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH  GD+V+  +   +   F      GRLGGEEFA     ++ + A  +A  L K
Sbjct: 274 INDTYGHQAGDQVLRQIGGVISASFRKADVYGRLGGEEFAVLLPNTTLETAREIAEQLIK 333

Query: 202 IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            I      + S P   ++ S G+A      + +  ++  AD+ALY AK  GRN+V 
Sbjct: 334 AIS----GLVSDPVHGLSASLGVAFTDAVDQDLHGLMNTADKALYRAKAQGRNQVA 385


>gi|262164495|ref|ZP_06032233.1| GGDEF family protein [Vibrio mimicus VM223]
 gi|262026875|gb|EEY45542.1| GGDEF family protein [Vibrio mimicus VM223]
          Length = 338

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D LSGL N  AF   + +L      + ++  DID+FK +ND +GH  GD++I  ++ +L 
Sbjct: 182 DSLSGLYNRRAFDGDMFTLLHAAHPVCLIMLDIDHFKALNDTYGHLFGDQIIRAIAKRLQ 241

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221
            +    +   R GGEEFA      S + A   A  +R+ IE   + +  SG S+ +IT S
Sbjct: 242 SLCRDGVTAYRYGGEEFALITPNKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGNITAS 301

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ E+   + + +++ RAD  LY AK  GRNRV+
Sbjct: 302 FGVVEKIDGDSLESLVGRADGLLYEAKNLGRNRVM 336


>gi|229528161|ref|ZP_04417552.1| sensory box/GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229334523|gb|EEO00009.1| sensory box/GGDEF family protein [Vibrio cholerae 12129(1)]
          Length = 321

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 19/172 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ QL+  D L+ L N            +      + LS +  DID FK IND FGH  G
Sbjct: 152 QLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKG 211

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+ FL+     V     F GR+GGEEF      +  + A  LA  +R+         +
Sbjct: 212 DEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIRQ-------RFA 264

Query: 212 SGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
             P    + HI + AG++   H +  I+ I  R+DQALY AK++GRNR   +
Sbjct: 265 EHPFFEQNEHIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 316


>gi|56416328|ref|YP_153403.1| hypothetical protein SPA4365 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161617862|ref|YP_001591827.1| hypothetical protein SPAB_05726 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197365251|ref|YP_002144888.1| hypothetical protein SSPA4054 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|205355274|ref|YP_002229075.1| hypothetical protein SG4381 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|238910713|ref|ZP_04654550.1| hypothetical protein SentesTe_06183 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|56130585|gb|AAV80091.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161367226|gb|ABX70994.1| hypothetical protein SPAB_05726 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197096728|emb|CAR62351.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|205275055|emb|CAR40143.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|261249636|emb|CBG27506.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267996913|gb|ACY91798.1| hypothetical protein STM14_5467 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301161034|emb|CBW20571.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|320088987|emb|CBY98743.1| Uncharacterized membrane protein SSP1970 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|323132893|gb|ADX20323.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|326630439|gb|EGE36782.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
 gi|332991360|gb|AEF10343.1| hypothetical protein STMUK_4538 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 354

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 118/250 (47%), Gaps = 20/250 (8%)

Query: 32  SIFFSIFIATVIFIANIFLFYI-GLTPF----------YGLEYILVENLSLVIISITISL 80
           S+   +FI ++ F ANI  F +  L P            GL  + +  L +V I+I   +
Sbjct: 104 SLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWLNGNEQGLRILYLLALPMVGIAIQHVI 163

Query: 81  LLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFF 134
              Y   +  ++ +L      ++ LS +D L+GL N     + L +     S    ++  
Sbjct: 164 QKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGLYNRRGLQNRLDTLQAPGSHEHYVLLL 223

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK  ND++GH +GD+ +  +S  +     +   V R GGEEF      +  Q+A  
Sbjct: 224 DIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTTAEPQQARA 283

Query: 195 LANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            A  +R+ + + +I      S+  ++T+S GIA    +  I   I +AD+ALY AK  GR
Sbjct: 284 TAERIRQEVYDLKIPHMFNESVATNVTVSIGIAPLTDRN-IGDAIEKADKALYEAKHLGR 342

Query: 253 NRVVCFSDIE 262
           N ++   D+ 
Sbjct: 343 NHILVSDDMR 352


>gi|301029412|ref|ZP_07192506.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
 gi|299877716|gb|EFI85927.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
          Length = 251

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 58  TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 117

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 118 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 177

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            EAA +A  +R  +   ++ I+   +I I+ S G+  +E             AD+ LY+A
Sbjct: 178 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQFQSLADRRLYLA 237

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 238 KQAGRNRV 245


>gi|319762855|ref|YP_004126792.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|317117416|gb|ADU99904.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
          Length = 561

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 95/178 (53%), Gaps = 21/178 (11%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           + L ++  R+ +LS  D L+GL N   F   L    ++       L+++  D+D+FKQ N
Sbjct: 378 EALTLANQRLEELSTTDSLTGLANRRHFDDILAKEWQRARRLRHPLALLMIDVDHFKQFN 437

Query: 144 DNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LAND 198
           D +GH  GD    +V   L  +L+    T     R GGEEF  A + S + E A+ +A  
Sbjct: 438 DTYGHLAGDDCLRQVAQILKQRLLRGSDT---AARFGGEEF--AVITSMDLEGALHIAEL 492

Query: 199 LRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRN 253
           +R+ +EN  +++    ++H+++S G++       + P   +I  AD+ALY AK++GRN
Sbjct: 493 IRQDVENHPVSVDGVDAVHVSVSIGLSALVPDGSRSP-PQLISLADEALYRAKRAGRN 549


>gi|291280709|ref|YP_003497543.1| hypothetical protein DEFDS_P167 [Deferribacter desulfuricans SSM1]
 gi|290755411|dbj|BAI81787.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 420

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 8/166 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I + S ID L+ + N + F       I     +NE +S++  DID FK+INDN+GH VG
Sbjct: 250 QIKRESEIDTLTNVFNRNTFDKYIVKAIDRFKKHNESVSVIMLDIDDFKKINDNYGHLVG 309

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+   +  L         + R GGEEF      +   +A  ++  + K +  +   + 
Sbjct: 310 DSVLRNFAAILKNSVRNSDLIFRYGGEEFIIVLPETKISQALSISERILKELNKTSFKLK 369

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              S+ +T S G+ E   ++ + T++ R D  LY +K +G+N++  
Sbjct: 370 KD-SLKVTASMGVTESKMEDNVETLLKRVDNYLYKSKATGKNKITS 414


>gi|207859680|ref|YP_002246331.1| hypothetical protein SEN4316 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|206711483|emb|CAR35868.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 354

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 118/250 (47%), Gaps = 20/250 (8%)

Query: 32  SIFFSIFIATVIFIANIFLFYI-GLTPF----------YGLEYILVENLSLVIISITISL 80
           S+   +FI ++ F ANI  F +  L P            GL  + +  L +V I+I   +
Sbjct: 104 SLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWLNDNEQGLRILYLLALPMVGIAIQHVI 163

Query: 81  LLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFF 134
              Y   +  ++ +L      ++ LS +D L+GL N     + L +     S    ++  
Sbjct: 164 QKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGLYNRRGLQNRLDTLQAPGSHEHYVLLL 223

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK  ND++GH +GD+ +  +S  +     +   V R GGEEF      +  Q+A  
Sbjct: 224 DIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTTAEPQQARA 283

Query: 195 LANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            A  +R+ + + +I      S+  ++T+S GIA    +  I   I +AD+ALY AK  GR
Sbjct: 284 TAERIRQEVYDLKIPHMFNESVATNVTVSIGIAPLTDRN-IGDAIEKADKALYEAKHLGR 342

Query: 253 NRVVCFSDIE 262
           N ++   D+ 
Sbjct: 343 NHILVSDDMR 352


>gi|207723947|ref|YP_002254345.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           MolK2]
 gi|206589154|emb|CAQ36116.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           MolK2]
          Length = 532

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 18/189 (9%)

Query: 84  YISGSILKELFISYNRIS--QLSRI------DCLSGLLNHSAFISSL---GSYNEKLSIV 132
           YI    LK   +   R+S  +++R+      D L+GL N      +L      ++  S+V
Sbjct: 328 YIEAHRLKRALLRGTRLSSSRMARLNHEALTDPLTGLYNRRGVADALRLLAGRHQPFSVV 387

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK+IND  GH VGD+V+  ++  +          GR+GGEEF      ++ + A
Sbjct: 388 TLDVDHFKRINDRDGHDVGDQVLKHIAALIREQARHDDITGRIGGEEFILLLPDATPEGA 447

Query: 193 AILANDLRKIIENSQINISSGPSIH-ITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250
              A  LR+ +E         P+   +T+S G+A      E +  ++  +D ALY AK+S
Sbjct: 448 FKTAERLRRAVE-----ARPNPTGQVVTVSLGMAHYPGASEEVDAVLKLSDLALYQAKRS 502

Query: 251 GRNRVVCFS 259
           GRNR V + 
Sbjct: 503 GRNRTVLYQ 511


>gi|197334335|ref|YP_002156376.1| sensory box/ggdef family protein [Vibrio fischeri MJ11]
 gi|197315825|gb|ACH65272.1| sensory box/ggdef family protein [Vibrio fischeri MJ11]
          Length = 443

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 98/182 (53%), Gaps = 21/182 (11%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQI 142
           LKE  + +   ++L+  D L+G  N +A    L   ++++       S+++ DID+FK++
Sbjct: 262 LKEKNVEF---AELAHRDSLTGARNRNAVRDWLERMSQQVRWGKQTFSVIYIDIDFFKKV 318

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFG---TPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           ND+ GH  GD +   L + ++V+ G   +  F+ R GGEEF   +  +  Q+A   A  +
Sbjct: 319 NDDLGHQTGDDI---LREFVLVITGAIKSTDFLVRWGGEEFIVFSPNNDLQQAEEKAEHI 375

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           R+ +E+     +      +T S G+AE    E I+ +I RAD AL+ AK +GRN V   S
Sbjct: 376 RRTVEHHLWCHNE----RLTCSLGVAE-MKDERITEVIARADDALFKAKNAGRNNVKASS 430

Query: 260 DI 261
           +I
Sbjct: 431 NI 432


>gi|187920356|ref|YP_001889387.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
 gi|187718794|gb|ACD20017.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
          Length = 393

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 8/168 (4%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           ++ R+ Q S+ D L+GL N   F      +      +  +S++ FD+D+FK+IND +GH 
Sbjct: 213 THGRLLQESQTDYLTGLGNRRWFFEEGARVMREAGVSRPVSLLAFDLDHFKRINDRYGHE 272

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+   +     + G    + R+GGEEFAA   G     A  + + + +    + ++
Sbjct: 273 TGDAVLKSFAAITRSLTGPEAMLARIGGEEFAALLPGHDSLRAEEVGDAIVRRFAGTVLH 332

Query: 210 ISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRV 255
             +   I  T+S G+A++   E   ++ ++  ADQALY AK  G NR+
Sbjct: 333 RINDVDIRATVSVGLAQQSASEAPTLADLLASADQALYRAKSLGGNRL 380


>gi|254492620|ref|ZP_05105791.1| ammonium transporter, putative [Methylophaga thiooxidans DMS010]
 gi|224462141|gb|EEF78419.1| ammonium transporter, putative [Methylophaga thiooxydans DMS010]
          Length = 1000

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 92/166 (55%), Gaps = 13/166 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS----YNEKLS---IVFFDIDYFKQINDNFGHPV 150
           +R+ QL+  D L+GL N + F+S L      + E L    ++F D+D FK+INDN GH  
Sbjct: 566 DRLKQLAYNDPLTGLYNRTYFMSHLKQRIAYHQENLGSVVLMFLDLDQFKKINDNLGHKA 625

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQIN 209
           GD+++  ++ +L  V      VGR GG+EF     G+ +  +A   A D+ K++  S + 
Sbjct: 626 GDQLLCEVASRLKQVMRELDLVGRWGGDEFVIVMSGNITLSQAEHKAEDILKVMR-SPVK 684

Query: 210 ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
           +  G ++ +  S G+A  E     P   ++ +AD A+Y +K+SGRN
Sbjct: 685 L-DGQTLVVPTSIGLAISENGQITP-EQLMQQADMAMYRSKQSGRN 728


>gi|254448560|ref|ZP_05062019.1| diguanylate cyclase [gamma proteobacterium HTCC5015]
 gi|198261749|gb|EDY86035.1| diguanylate cyclase [gamma proteobacterium HTCC5015]
          Length = 394

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 119/263 (45%), Gaps = 31/263 (11%)

Query: 18  NLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY--------GLEYIL---V 66
           N+ S   H   I F +F+ +  A V    N    ++   P          G  +IL   V
Sbjct: 133 NITSALAHVKKIRF-LFWCVVTALVCLGINDLFGWLEHAPLLERSLYQPDGTPHILWWVV 191

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----- 121
           + +  +I+S  I L L  +   + +E     N   ++S ID L+ L N S+FI       
Sbjct: 192 QAVMALILSALIYLCLLAVGRWVERE-----NLYREMSTIDGLTRLTNRSSFIKRGDEEL 246

Query: 122 ------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     +  L+ +  D+D+FK IND +GH  GD+V+   S  ++        VGR 
Sbjct: 247 ARLQRLPSDPSPTLACIMLDLDHFKSINDTWGHHAGDEVLVVASKIMMDNARQYDEVGRY 306

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPI 233
           GGEEFA          A  +A  LRK I  + + +  G +I  T S G+A    +  E +
Sbjct: 307 GGEEFAILLPSVDLALAEKIAERLRKKISEAVVKV-DGKAIQFTASLGVASFPSEGLENM 365

Query: 234 STIIYRADQALYVAKKSGRNRVV 256
           + ++  AD ALY AK+ GRN+VV
Sbjct: 366 NDLLKAADAALYEAKEGGRNQVV 388


>gi|229528476|ref|ZP_04417867.1| sensory box/GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229334838|gb|EEO00324.1| sensory box/GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|327485707|gb|AEA80113.1| Sensory box/GGDEF family protein [Vibrio cholerae LMA3894-4]
          Length = 627

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 18/174 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS--IVFFDIDYFKQINDNFGH 148
           NR+ +LS  D L+ L N   F  ++         Y ++    +   DID+FK+IND FGH
Sbjct: 458 NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGH 517

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+  ++  +        F+ R+GGEEFA     +S +EA  + N +R       +
Sbjct: 518 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFSYTSIEEAEQVLNRVR-------L 570

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +I+S     +T+S G+ + C     S    RAD ALY +K SGRN++   + +E
Sbjct: 571 HIASLHDQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTAME 622


>gi|291282640|ref|YP_003499458.1| Diguanylate cyclase [Escherichia coli O55:H7 str. CB9615]
 gi|209770198|gb|ACI83411.1| hypothetical protein ECs2144 [Escherichia coli]
 gi|209770204|gb|ACI83414.1| hypothetical protein ECs2144 [Escherichia coli]
 gi|290762513|gb|ADD56474.1| Diguanylate cyclase [Escherichia coli O55:H7 str. CB9615]
 gi|320636972|gb|EFX06837.1| diguanylate cyclase [Escherichia coli O157:H7 str. G5101]
 gi|320642326|gb|EFX11619.1| diguanylate cyclase [Escherichia coli O157:H- str. 493-89]
 gi|320647678|gb|EFX16435.1| diguanylate cyclase [Escherichia coli O157:H- str. H 2687]
 gi|320653311|gb|EFX21450.1| diguanylate cyclase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320658919|gb|EFX26549.1| diguanylate cyclase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320663752|gb|EFX30984.1| diguanylate cyclase [Escherichia coli O157:H7 str. LSU-61]
          Length = 296

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY---NEKLSI--VFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S        E L++  +  DID FK +ND +GH +GD V+  L
Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNTEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      ++++EA      + ++++N  I  S G  I+I
Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 247

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +E +  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 248 TVTAGVSRAFPEETLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291


>gi|226953553|ref|ZP_03824017.1| diguanylate cyclase [Acinetobacter sp. ATCC 27244]
 gi|226835731|gb|EEH68114.1| diguanylate cyclase [Acinetobacter sp. ATCC 27244]
          Length = 472

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 89/197 (45%), Gaps = 17/197 (8%)

Query: 77  TISLLLGYISGSILKELFISYNR-----ISQLSRI---DCLSGLLNHSAFISSLGSYNEK 128
           TIS  LG I  +I      S N+     I +L      D L+  L    F+ SL    E+
Sbjct: 273 TISTRLGLIMMTIAPLTVSSINKVRSKLIEELQHTIAHDELTSSLTRRQFLQSLQILQEQ 332

Query: 129 L-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                   + +  DID+FK IND++GH +GD+ +         +       GRLGGEEFA
Sbjct: 333 AQNAGHTSAFLMLDIDHFKHINDSYGHQIGDRALQHFVKTTQTLLNPQDLFGRLGGEEFA 392

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST--IIYR 239
                ++E  A   A  +R+ +  S I +       I  S GI     ++  ST  +   
Sbjct: 393 IFIANTNESVAYQCAEKIRQHVSESPIQLEHAQIFSIQTSIGICINTPEKNYSTEQLFKH 452

Query: 240 ADQALYVAKKSGRNRVV 256
           AD ALY AK+ GRN+VV
Sbjct: 453 ADDALYRAKRQGRNQVV 469


>gi|229514351|ref|ZP_04403812.1| sensory box/GGDEF family protein [Vibrio cholerae TMA 21]
 gi|254284565|ref|ZP_04959532.1| sensory box/GGDEF family protein [Vibrio cholerae AM-19226]
 gi|150425350|gb|EDN17126.1| sensory box/GGDEF family protein [Vibrio cholerae AM-19226]
 gi|229348331|gb|EEO13289.1| sensory box/GGDEF family protein [Vibrio cholerae TMA 21]
          Length = 321

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 19/172 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ QL+  D L+ L N            +      + LS +  DID FK IND FGH  G
Sbjct: 152 QLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKG 211

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+ FL+     V     F GR+GGEEF      +  + A  LA  +R+         +
Sbjct: 212 DEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIRQ-------RFA 264

Query: 212 SGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
             P    + HI + AG++   H +  I+ I  R+DQALY AK++GRNR   +
Sbjct: 265 EHPFFEQNEHIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 316


>gi|186471171|ref|YP_001862489.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia phymatum
           STM815]
 gi|184197480|gb|ACC75443.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia phymatum
           STM815]
          Length = 508

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 13/165 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +I  L+  D L+GL N       L              +++++ D+D FKQ+ND  GH  
Sbjct: 340 KILHLASHDSLTGLPNRRELRDRLEQILSVRARPQGGSVAMMYLDLDGFKQVNDRLGHCA 399

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-- 208
           GD+V+  ++ +L  V      V RLGG+EFA  A  ++      LA   +++I +  +  
Sbjct: 400 GDEVLETVAARLSRVLRPGELVARLGGDEFAIIADHTTLPSVVALA---QRVIRDIALPY 456

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           ++S+G ++ I  S GIA   + + +  +I RADQALY AK++GR 
Sbjct: 457 HLSTGEAVSIGTSVGIALAANDDSVDGLIRRADQALYSAKQAGRG 501


>gi|323152714|gb|EFZ38986.1| cellulose synthesis regulatory protein [Escherichia coli EPECa14]
          Length = 558

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLHWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            +AA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 545 KQAGRNRV 552


>gi|262275035|ref|ZP_06052846.1| hypothetical protein VHA_002018 [Grimontia hollisae CIP 101886]
 gi|262221598|gb|EEY72912.1| hypothetical protein VHA_002018 [Grimontia hollisae CIP 101886]
          Length = 267

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 10/169 (5%)

Query: 100 ISQLSRIDCLSGLLNH----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +  ++  D L+ L N       F     ++     +   DID+FK IND FGHPVGD V+
Sbjct: 88  LRDMAHRDDLTNLYNRRYLLDLFSERHAAHQRCQYLAIADIDHFKHINDTFGHPVGDIVL 147

Query: 156 AFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS--- 211
             ++ + +  F TP  +  RLGGEEFA      +  EA      LRK +E+ +  +S   
Sbjct: 148 RRVARE-IEGFTTPDEYAFRLGGEEFALLIWADNHGEAYARLEQLRKSLEHCEFRVSHPN 206

Query: 212 SGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           S P ++  TIS G+      +   +   RAD+ALY+AK+SGRN ++ + 
Sbjct: 207 SQPLTLSCTISIGMTVIAATDDFLSASLRADEALYIAKRSGRNNLINYE 255


>gi|258623235|ref|ZP_05718244.1| GGDEF family protein [Vibrio mimicus VM573]
 gi|258584533|gb|EEW09273.1| GGDEF family protein [Vibrio mimicus VM573]
          Length = 326

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 15/180 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQI 142
           +++ +Y  I   S  D L+GLLN             I+     N +L I   D+D+FK I
Sbjct: 132 KIYRNYTVILHESERDKLTGLLNRRTLEDRLRNTFAINPSAEENHRLWIAMLDLDHFKAI 191

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+FGH +GD+++   + Q+   FG    + R GGEEF        E       +  R+ 
Sbjct: 192 NDHFGHMIGDEILLMFAQQMQHYFGPSSQLFRFGGEEFVIVFSSGDELAINRTLDGFRRH 251

Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           I          P I  ++ SAG       + + TI+  AD+ALY AK+ GR++V C+ ++
Sbjct: 252 IRQHTF-----PRIGELSFSAGFCSLRPGDYLPTILDHADKALYYAKEHGRDQVHCYENL 306


>gi|89093894|ref|ZP_01166839.1| sensory box protein [Oceanospirillum sp. MED92]
 gi|89081780|gb|EAR61007.1| sensory box protein [Oceanospirillum sp. MED92]
          Length = 342

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 17/196 (8%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------I 119
           ENL  +I   T  L        + ++L      +  L+  D L+G+ N   F       I
Sbjct: 146 ENLDHIIQERTKEL------DQLNQQLARKVEEVEMLASRDALTGIYNRRMFESFLDIEI 199

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                Y++ + ++  DID FK +ND +GH  GDKV+  ++  L        ++ R GGEE
Sbjct: 200 KRAKRYSQPMCVILADIDLFKHVNDRYGHSSGDKVLVEVALTLQQHLRESDYLARWGGEE 259

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           FA     ++ + A   A  LR  +E    ++ +   I +T S G+ +   K+  ++I  R
Sbjct: 260 FAIILPNTATKVAMETAERLRHEVE----SLVTTEGISVTCSFGVTQFHQKDCGTSIFSR 315

Query: 240 ADQALYVAKKSGRNRV 255
            DQALY+AK   RN V
Sbjct: 316 MDQALYMAKDQNRNTV 331


>gi|328474322|gb|EGF45127.1| putative GGDEF family protein [Vibrio parahaemolyticus 10329]
          Length = 306

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 81/165 (49%), Gaps = 18/165 (10%)

Query: 104 SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S+ID L+ + N   F   L        S   + +++ FD+D+FK IND  GH  GD V+ 
Sbjct: 141 SQIDSLTNIFNRRVFFEKLSEEVVKSQSPEYQGALLLFDLDFFKVINDKRGHDAGDYVLE 200

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-----SQINIS 211
            L+D +  +        R+GGEEFA    GSS  EA  L  ++R  I+N      QI I 
Sbjct: 201 SLADLVSNLLMKDETFARVGGEEFAIILSGSSLSEARELGEEVRSHIQNCVFEFKQIEIP 260

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                 +T+S G+      E    +  R D+ LY AK++GRN VV
Sbjct: 261 ------VTVSVGVVNIIQNETTKGLYARVDKVLYAAKRNGRNCVV 299


>gi|326793521|ref|YP_004311341.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326544285|gb|ADZ89505.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 392

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 119/270 (44%), Gaps = 20/270 (7%)

Query: 12  WLCHEKNLESFSPHTFMIY----FSIFFSIFIATVIFIANIFLF----YIGLTPFYGLEY 63
           WL   + ++ + P + M+      SI FS       FI  +FLF     +    F+  E 
Sbjct: 111 WLGTWRLIDMYPPISGMVLVAMSLSILFSHSFQFRQFILLLFLFNTIPVLSYLAFHMDEL 170

Query: 64  ILVENLSLVIISITISLLLGYIS------GSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           + +  + L+     + LLL ++       G  +  L     R    +  D L+ L N   
Sbjct: 171 VTLRGVELMTNFGPMMLLLIFVLPYQMHFGKYVDTLRNRQKRTEHEAERDYLTDLYNRRG 230

Query: 118 F---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           F     +L S   +++ +  D D+FK IND FGH VGDKV+  L+ +L  ++    FV R
Sbjct: 231 FENRKETLAS-ETQVATLLVDADHFKHINDTFGHTVGDKVLVELASKLRGIYLNEHFVVR 289

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
            GGEEF    +    ++   +A+D    +   Q    +  +  +T+S G++         
Sbjct: 290 WGGEEFLVLIVNPDPEQLKAIADDFHASLCTEQYRAIAPRA--LTVSIGVSNMGPLSQFE 347

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            +  +AD  LY AK+ GRN+V  FS   N 
Sbjct: 348 ALFEQADHCLYKAKERGRNQVRLFSQETNE 377


>gi|300904847|ref|ZP_07122672.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|301304250|ref|ZP_07210365.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|300403230|gb|EFJ86768.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|300840507|gb|EFK68267.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|315257212|gb|EFU37180.1| diguanylate cyclase domain protein [Escherichia coli MS 85-1]
          Length = 436

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 243 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 302

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 303 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 362

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            +AA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 363 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 422

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 423 KQAGRNRV 430


>gi|285017933|ref|YP_003375644.1| hypothetical protein XALc_1142 [Xanthomonas albilineans GPE PC73]
 gi|283473151|emb|CBA15657.1| hypothetical protein XALc_1142 [Xanthomonas albilineans]
          Length = 329

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 117/259 (45%), Gaps = 17/259 (6%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV 72
           +CH  +  +  P  +++  S FF +   TV    NI L  + L    G         SL+
Sbjct: 81  VCHALH-HAAVPWLYLVMMSNFF-VVGRTVGLACNITLIVMLLLIIPGTLLGPEHMFSLL 138

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------Y 125
            +S+ I+ L GYI    L++  +   ++ QL+  D L+ L N      SL          
Sbjct: 139 TVSLLITGL-GYILSLRLEDDRV---QLEQLASHDALTALPNRRMLERSLSQCVADPRRT 194

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
             +  ++  DID+FK++ND  GH  GD+ +  L+  L +    P  V R GGEEF     
Sbjct: 195 VRRHGLIVLDIDHFKKVNDLHGHAEGDRTLTELAALLRLQVHAPDEVFRFGGEEFVIVTR 254

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
             S  E   L    +++ E ++ ++   PS  IT+S G A  C ++       RAD ALY
Sbjct: 255 LQSTHE---LTAFTKRLYEATR-SVLHSPSGAITVSLGAAMLCDEQQWQDWFSRADTALY 310

Query: 246 VAKKSGRNRVVCFSDIENN 264
            AK  GR+  V   D+  +
Sbjct: 311 QAKNKGRDTYVVAEDVTQD 329


>gi|258621728|ref|ZP_05716759.1| GGDEF family protein [Vibrio mimicus VM573]
 gi|258585959|gb|EEW10677.1| GGDEF family protein [Vibrio mimicus VM573]
          Length = 377

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 81/161 (50%), Gaps = 9/161 (5%)

Query: 101 SQLSRIDCLSGLLNHSAFISSL--GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ++L+  D ++GLLN       L    +N+ L+I   DID FKQIND +GH VGDKVI ++
Sbjct: 220 AELAARDPMTGLLNRRGMEGFLQGKRHNQYLAIAVLDIDDFKQINDTYGHDVGDKVICYI 279

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            +Q+     +   V R GGEEF         EQ   I+      +  +S   +  G    
Sbjct: 280 GEQIENHIRSSDAVARFGGEEFVVYVTAKEQEQIHRIMQRIFDAVCHDSTQILDQG---- 335

Query: 218 ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            T+S G+   E   +     +   ADQ LYVAK SG+N++V
Sbjct: 336 FTVSGGVEIIESKTELTFEELFKAADQKLYVAKSSGKNQLV 376


>gi|254291528|ref|ZP_04962319.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|150422592|gb|EDN14548.1| GGDEF family protein [Vibrio cholerae AM-19226]
          Length = 489

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 12/188 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSI 131
           + ++L+  +++G +L  L   ++R   +QL+  D ++GLLN     S L    +++ L+I
Sbjct: 306 LVVALVYLFLTG-VLIYLNTRWDRQHYAQLAARDPMTGLLNRRGMESFLKGKRHSQYLAI 364

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQ 190
              DID FKQIND +GH +GD+VI ++ +Q+     +   V R GGEEF         EQ
Sbjct: 365 AVLDIDDFKQINDAYGHDMGDRVICYIGEQIENHIRSSDAVARFGGEEFVVYVTAKEKEQ 424

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAK 248
              I+      +   S + +  G     T+S GI   E         +   AD+ LYVAK
Sbjct: 425 ITRIMQRIFDAVCRESPLILEPG----FTVSGGIEVVESTTDRSFEDLFKAADEKLYVAK 480

Query: 249 KSGRNRVV 256
            SG+N+++
Sbjct: 481 TSGKNQLI 488


>gi|149194946|ref|ZP_01872039.1| hypothetical protein CMTB2_08800 [Caminibacter mediatlanticus TB-2]
 gi|149134867|gb|EDM23350.1| hypothetical protein CMTB2_08800 [Caminibacter mediatlanticus TB-2]
          Length = 235

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 104/202 (51%), Gaps = 20/202 (9%)

Query: 69  LSLVIISITISLLLGYIS--GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------I 119
           LS  +IS  IS  L   S   S+  EL      + +LS  D L+   N  AF       I
Sbjct: 41  LSFYLISFIISYYLEKFSFETSLKNEL------LEKLSFFDYLTEAYNRRAFFKFANILI 94

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA-FLSDQLVVVFGTPMFVGRLGGE 178
           +     N+ L+++  DIDYFK+IND +GH VGD V+  F+S     +    +F  R+GGE
Sbjct: 95  NDAKRENKNLALLMMDIDYFKKINDTYGHEVGDIVLKEFVSLIKKNIRKNDLF-ARIGGE 153

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS-AGIAERCHKEPISTII 237
           EF      ++E +   +AN + K+IE SQI I     I  TIS  G     + + + + +
Sbjct: 154 EFVLLIKINNEYQPYSIANKILKLIETSQI-IYKNYKIKFTISIGGYIFNPNTDSLESAL 212

Query: 238 YRADQALYVAKKSGRNRVVCFS 259
            +AD+ALY AK+  RN +V F+
Sbjct: 213 AKADKALYKAKER-RNTIVIFN 233


>gi|313682630|ref|YP_004060368.1| diguanylate cyclase with extracellular sensor [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155490|gb|ADR34168.1| diguanylate cyclase with extracellular sensor [Sulfuricurvum
           kujiense DSM 16994]
          Length = 461

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 13/168 (7%)

Query: 97  YN-RISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFG 147
           YN ++ +LS  D L+G+ N       L    +K+        S++  DID+FK +ND +G
Sbjct: 295 YNAKLLELSITDKLTGIYNRLKIDERLTDEQKKVNRYMNYRCSVMMIDIDFFKTVNDTYG 354

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  L++ +   F      GR GGEEF      +S ++A   A   R+ +E   
Sbjct: 355 HQYGDDVLKQLAELMRQNFRETDVFGRWGGEEFMVIFPNTSVEDAYAAAEKFRRNVEE-- 412

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            N+ S     +T+S G+      E +  ++ R D ALY AK+ GRNR+
Sbjct: 413 -NVRSMDK-PVTVSIGLGTFLTAESVDNMLSRIDAALYDAKEQGRNRI 458


>gi|331658001|ref|ZP_08358963.1| cellulose synthesis regulatory protein [Escherichia coli TA206]
 gi|315296460|gb|EFU55757.1| diguanylate cyclase domain protein [Escherichia coli MS 16-3]
 gi|331056249|gb|EGI28258.1| cellulose synthesis regulatory protein [Escherichia coli TA206]
          Length = 558

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ LL  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 365 TMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G++ 
Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGANL 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            +AA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 485 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 545 KQAGRNRV 552


>gi|209544374|ref|YP_002276603.1| diguanylate cyclase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532051|gb|ACI51988.1| diguanylate cyclase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 390

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 4/134 (2%)

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
           +  + +S++ FDID+FK IND  GH +GD V+   +  +    G    +GRLGGEEFA  
Sbjct: 247 TVGQPVSLLIFDIDHFKSINDIHGHAMGDAVLKLFARAMGEEVGQEAIMGRLGGEEFAML 306

Query: 184 ALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRAD 241
             GS    A A   N  R+    +  +    P +H+T+S G+ E R  +  +  ++  AD
Sbjct: 307 LPGSDRATARAAGQNIARRFTALAAQDFR--PPLHVTVSIGLTEVRTSRITLDDLLAAAD 364

Query: 242 QALYVAKKSGRNRV 255
            ALY AK  GRNR+
Sbjct: 365 GALYQAKTLGRNRI 378


>gi|317049505|ref|YP_004117153.1| diguanylate cyclase [Pantoea sp. At-9b]
 gi|316951122|gb|ADU70597.1| diguanylate cyclase [Pantoea sp. At-9b]
          Length = 404

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 79/151 (52%), Gaps = 12/151 (7%)

Query: 107 DCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N +AFIS L          E   ++F D D FK IND +GH  GD+V+  ++ 
Sbjct: 250 DPLTGLANRAAFISKLSQLLDQQLAQENFVLLFLDGDRFKSINDTWGHAAGDEVLQSIAT 309

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS---QINISSGPSIH 217
           +L  +      V RLGG+EFA      + +EA      L   IE S   +I IS+G +I 
Sbjct: 310 RLSGLVTKSDLVARLGGDEFAILITSMTSEEA---LQQLTARIEASITQKIAISAGVNIT 366

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAK 248
            +++ G A   H + +++I+ RAD  +Y  K
Sbjct: 367 TSVTIGYAWSQHGDSVTSILERADMHMYKNK 397


>gi|255319086|ref|ZP_05360307.1| diguanylate cyclase [Acinetobacter radioresistens SK82]
 gi|262378170|ref|ZP_06071327.1| GGDEF family protein [Acinetobacter radioresistens SH164]
 gi|255303888|gb|EET83084.1| diguanylate cyclase [Acinetobacter radioresistens SK82]
 gi|262299455|gb|EEY87367.1| GGDEF family protein [Acinetobacter radioresistens SH164]
          Length = 523

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 81/154 (52%), Gaps = 10/154 (6%)

Query: 107 DCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL N      FI  +       +++  DIDYFK+IND++GH  GD+++  ++  ++
Sbjct: 373 DPLTGLFNRRGLEIFIEEMTRTQTHFAVLLIDIDYFKKINDSYGHAQGDRILKQVAQHIL 432

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
             F       R GGEEF      +  + A   A  LRK +EN+ +N   GP   ITIS G
Sbjct: 433 NNFRKNDLCCRYGGEEFVVLMPQADIENAYKSAERLRKKMENT-LNDGIGP---ITISIG 488

Query: 224 IA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           IA      +E ++ +   AD  LY AK +GRN+V
Sbjct: 489 IAFWPETSRE-VARVFEIADAKLYQAKIAGRNQV 521


>gi|240139038|ref|YP_002963513.1| putative diguanylate cyclase with GGDEF motif; putative membrane
           protein [Methylobacterium extorquens AM1]
 gi|240009010|gb|ACS40236.1| putative diguanylate cyclase with GGDEF motif; putative membrane
           protein [Methylobacterium extorquens AM1]
          Length = 498

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 94/187 (50%), Gaps = 12/187 (6%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE---KLSI 131
           ++LL  + G  L+        +++L++ D L+GL N     + F  + G+       L++
Sbjct: 310 TVLLSLLFGRELRRSAAMQAELARLAQTDVLTGLPNRRHFETVFAQAWGTSRRTGAPLAL 369

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQ 190
           +  D D+FK+ ND +GH VGD V+  L+D L      P   V R+GGEEF A  L  ++ 
Sbjct: 370 ILIDADHFKRYNDRYGHAVGDAVLRGLADSLSASVRRPGDLVARVGGEEF-AVLLPRTDH 428

Query: 191 EAAILANDL--RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           + A+  ++   R I   +  ++  GP   +T+S G+A          +  RAD ALY AK
Sbjct: 429 DGAMRVSETIHRAIAGFAMPSVGIGPGT-VTVSLGLAVDSGSGTAEDLYRRADAALYEAK 487

Query: 249 KSGRNRV 255
             GRN+ 
Sbjct: 488 AGGRNQT 494


>gi|254522408|ref|ZP_05134463.1| hypothetical protein SSKA14_1536 [Stenotrophomonas sp. SKA14]
 gi|219719999|gb|EED38524.1| hypothetical protein SSKA14_1536 [Stenotrophomonas sp. SKA14]
          Length = 481

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 94/196 (47%), Gaps = 16/196 (8%)

Query: 82  LGYISGSIL--KELFISYNRISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIV 132
           LG+   SIL   +L      + QL+R D L+G+ N   F + L   +N        L ++
Sbjct: 282 LGFGLRSILLQTDLMERQAGLDQLARQDGLTGVANRREFDALLLAEWNRARRSGSPLGLL 341

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQE 191
             DID+FK  ND  GHP GD+ +  ++  L  + G     V R GGEEFA    GS+   
Sbjct: 342 LVDIDHFKAFNDQHGHPAGDRCLQAVAAVLKAIAGRAGDSVARYGGEEFAVIVPGSALSG 401

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              LA  LR+ +E   + +  G S+ I+I  G            ++  AD  LY AK++G
Sbjct: 402 VLALAERLREAVE--ALPLPEG-SVSISIGVGYLHPPALASADQLLADADAGLYAAKRAG 458

Query: 252 RNRVVCFS---DIENN 264
           RN+VV  +   D E N
Sbjct: 459 RNQVVLHAHVLDDEGN 474


>gi|121586661|ref|ZP_01676445.1| sensory box/GGDEF family protein [Vibrio cholerae 2740-80]
 gi|147672290|ref|YP_001215141.1| sensory box/GGDEF family protein [Vibrio cholerae O395]
 gi|153818335|ref|ZP_01971002.1| sensory box/GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|227812505|ref|YP_002812515.1| sensory box/GGDEF family protein [Vibrio cholerae M66-2]
 gi|229505921|ref|ZP_04395430.1| sensory box/GGDEF family protein [Vibrio cholerae BX 330286]
 gi|298499714|ref|ZP_07009520.1| sensory box/GGDEF family protein [Vibrio cholerae MAK 757]
 gi|121549089|gb|EAX59124.1| sensory box/GGDEF family protein [Vibrio cholerae 2740-80]
 gi|126511148|gb|EAZ73742.1| sensory box/GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|146314673|gb|ABQ19213.1| sensory box/GGDEF family protein [Vibrio cholerae O395]
 gi|227011647|gb|ACP07858.1| sensory box/GGDEF family protein [Vibrio cholerae M66-2]
 gi|227015586|gb|ACP11795.1| sensory box/GGDEF family protein [Vibrio cholerae O395]
 gi|229356272|gb|EEO21190.1| sensory box/GGDEF family protein [Vibrio cholerae BX 330286]
 gi|297541695|gb|EFH77746.1| sensory box/GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 321

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 19/172 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ QL+  D L+ L N            +      + LS +  DID FK IND FGH  G
Sbjct: 152 QLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKG 211

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+ FL+     V     F GR+GGEEF      +  + A  LA  +R+         +
Sbjct: 212 DEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIRQ-------RFA 264

Query: 212 SGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
             P    + HI + AG++   H +  I+ I  R+DQALY AK++GRNR   +
Sbjct: 265 EHPFFEQNEHIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 316


>gi|262190581|ref|ZP_06048821.1| sensory box/GGDEF family protein [Vibrio cholerae CT 5369-93]
 gi|262033541|gb|EEY52039.1| sensory box/GGDEF family protein [Vibrio cholerae CT 5369-93]
          Length = 308

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 19/172 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ QL+  D L+ L N            +      + LS +  DID FK IND FGH  G
Sbjct: 139 QLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKG 198

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+ FL+     V     F GR+GGEEF      +  + A  LA  +R+         +
Sbjct: 199 DEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIRQ-------RFA 251

Query: 212 SGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
             P    + HI + AG++   H +  I+ I  R+DQALY AK++GRNR   +
Sbjct: 252 EHPFFEQNEHIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 303


>gi|307721180|ref|YP_003892320.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica
           DSM 16294]
 gi|306979273|gb|ADN09308.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica
           DSM 16294]
          Length = 320

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 17/172 (9%)

Query: 99  RISQLSRIDCLSGLLN-HSA------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  L+  D L+G+ N H A       I     YN + +++  DIDYFK +ND++GH VG
Sbjct: 150 KLKNLATKDSLTGIYNRHKANEIIDEEIIRQNKYNSRFAVLMLDIDYFKSVNDSYGHDVG 209

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN---SQI 208
           D ++  LS  ++          R GGEEF      ++ + A   A  L  II +   +Q+
Sbjct: 210 DIILQELSKLILQNTRKSDRFARWGGEEFLVILSQTTAEGAFEYAQKLANIIASYNFTQV 269

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++       +T+S G+      E  + ++ RAD+ALY+AK  GRNRV+  S+
Sbjct: 270 SV-------LTVSIGVCVYKDGESKAELLKRADEALYIAKNRGRNRVIFKSN 314


>gi|303242469|ref|ZP_07328950.1| diguanylate cyclase [Acetivibrio cellulolyticus CD2]
 gi|302589993|gb|EFL59760.1| diguanylate cyclase [Acetivibrio cellulolyticus CD2]
          Length = 428

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 70/134 (52%), Gaps = 6/134 (4%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           NE LS++  DID+FK +ND  GH VGD V+   +  ++        V R GGEEF A   
Sbjct: 282 NENLSVIMMDIDHFKNVNDKHGHTVGDAVLVVFAQVILRCIRKTDLVARYGGEEFIAILP 341

Query: 186 GSSEQEAAILANDLRKIIENS---QINISSGPSIHITISAGIAE-RCHKEPISTIIYRAD 241
            +  + A  +A  +R+ I      ++N +  P   IT S G+A    H    + II  AD
Sbjct: 342 ATDTKTAVGIAERIRETIATESMPKLNDTVVPG--ITCSLGVATYPIHANTKNNIIKVAD 399

Query: 242 QALYVAKKSGRNRV 255
            ALY AK+ GRNRV
Sbjct: 400 IALYKAKQGGRNRV 413


>gi|213622062|ref|ZP_03374845.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 288

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 25/203 (12%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
            LSL +I +   LL  ++S     +L     R+  +S  D ++G+ N   +   L +   
Sbjct: 92  TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 150

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               ++ + +++  DID+FK IND +GH  GD+ I  L+ QL +       +GR GG+EF
Sbjct: 151 HSRRHHREATLLIIDIDHFKSINDTWGHDAGDEAIIALTRQLQITLRGSDIIGRFGGDEF 210

Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237
           A    G+   ++AI A  + ++ E  + + +   P + + IS G+A      P++  I  
Sbjct: 211 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 261

Query: 238 YR-----ADQALYVAKKSGRNRV 255
           YR     AD ALY AK +GRNR 
Sbjct: 262 YREWLKSADMALYKAKNAGRNRT 284


>gi|170768230|ref|ZP_02902683.1| diguanylate cyclase (GGDEF) domain protein [Escherichia albertii
           TW07627]
 gi|170122996|gb|EDS91927.1| diguanylate cyclase (GGDEF) domain protein [Escherichia albertii
           TW07627]
          Length = 296

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 82/158 (51%), Gaps = 6/158 (3%)

Query: 104 SRIDCLSGLLNHSAFISSLG---SYNEKLSI--VFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S     S  E LS+  +  DID FK +ND +GH  GD V+  L
Sbjct: 129 SNMDILTGLPGRRVLDESFDYQLSNAEPLSLYLMLLDIDRFKLVNDTYGHLTGDVVLRTL 188

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF       ++ EA      + ++++N  I    G  I+I
Sbjct: 189 ATSLANWTRDYETVYRYGGEEFIIIIKAQNDDEACHAGVRICQLVDNHAI-AHPGGHINI 247

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T++AG++    +EP+  +I RAD+A+Y  K++GRNR +
Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM 285


>gi|241206173|ref|YP_002977269.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860063|gb|ACS57730.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 717

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 94/180 (52%), Gaps = 11/180 (6%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFF 134
           LLG IS  + +E  +   +++ L+  D L+GL N +AF   +       + +  +++++ 
Sbjct: 268 LLG-ISQDVTEERAVEA-KLAHLATRDPLTGLPNRAAFSEHINQRAVEATADSAIALLYI 325

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D+FK IND+ GH  GD ++  +S++L+ + G    V RLGG+EFA        + A  
Sbjct: 326 DVDHFKHINDSKGHAAGDALLCQVSERLLQLAGEGDLVARLGGDEFAVVLELDEPERAGR 385

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
            A  L + +  S      G   H+T S GIA    H      ++  AD ALY AK+SGR+
Sbjct: 386 FAQRLLQTL--SHAFDLDGAREHVTCSVGIALAPDHAGDADVLMRHADLALYAAKESGRS 443


>gi|187920151|ref|YP_001889182.1| RNase II stability modulator [Burkholderia phytofirmans PsJN]
 gi|187718589|gb|ACD19812.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phytofirmans PsJN]
          Length = 689

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 93/182 (51%), Gaps = 11/182 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYF 139
           SG+ + E  ++  R++QL+  D L+GL N +A    +       +  E + ++F D+D F
Sbjct: 242 SGTDITEERLAQERLTQLANTDSLTGLANRNAIQDKIRAAIEDAAPGEAVGVLFLDLDNF 301

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND++GH  GD++I  +S  +         + RLGG+EF   A   +  E   L    
Sbjct: 302 KKVNDHYGHVFGDRLIRDVSSAISECLNEGDTLARLGGDEFIVLAAKGTAHE---LETTA 358

Query: 200 RKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++I+E  +   + G   ++   S GIA    H + + ++I  AD A+YVAK  G+     
Sbjct: 359 QRILERMRTPFALGLVEVYTGCSIGIARYPEHGDSLESLIRSADTAMYVAKDEGKRTHRV 418

Query: 258 FS 259
           FS
Sbjct: 419 FS 420


>gi|218289278|ref|ZP_03493513.1| diguanylate cyclase [Alicyclobacillus acidocaldarius LAA1]
 gi|218240626|gb|EED07806.1| diguanylate cyclase [Alicyclobacillus acidocaldarius LAA1]
          Length = 376

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 11/176 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL++      + ++ D L+GL N  +F   L          N  L +   DID FKQIND
Sbjct: 199 ELWVRQILSEKEAKTDALTGLYNRKSFDEYLDFALQISEGTNTPLHLAVIDIDNFKQIND 258

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGD+++   +  +        F+ R GGEEFA      S ++A      +R+ I 
Sbjct: 259 RYGHLVGDEILRRTAQAIQQHLAAGDFLARYGGEEFAVIIPEVSHEQAVQNMEKIREYIA 318

Query: 205 N-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           N   + +    +   T+S G++     E    +  RADQ LY AK++G+N++V + 
Sbjct: 319 NVHHLELDGNRA---TVSIGLSTHRPGETRDELFERADQCLYRAKQTGKNKIVAWE 371


>gi|146278372|ref|YP_001168531.1| response regulator receiver modulated diguanylate cyclase
           [Rhodobacter sphaeroides ATCC 17025]
 gi|145556613|gb|ABP71226.1| response regulator receiver modulated diguanylate cyclase
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 461

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 13/168 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+ +D L+GL N     + L +         E+ +++  D+D FK +ND +GH  GD V
Sbjct: 287 RLAVVDPLTGLYNRRYAGAHLAAVAERAQAAGERFAVMVIDLDRFKSVNDRWGHGAGDAV 346

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSG 213
           +  ++ +L         + R+GGEEF  A        EA  +A  LR+ IE   +++  G
Sbjct: 347 LVEVARRLHANLRPGDLIARIGGEEFLVALPDVRRPDEARAVAERLREAIEEQPVSLPCG 406

Query: 214 PSIHITISAGIA----ERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            S+ +TIS G+A    +   + E +  ++ RAD AL +AK  GRN+V 
Sbjct: 407 GSLRVTISVGLAFSLDDGGRRVETVDQVVNRADSALLIAKSGGRNQVT 454


>gi|153217131|ref|ZP_01950895.1| sensory box/GGDEF family protein [Vibrio cholerae 1587]
 gi|254224755|ref|ZP_04918371.1| sensory box/GGDEF family protein [Vibrio cholerae V51]
 gi|124113851|gb|EAY32671.1| sensory box/GGDEF family protein [Vibrio cholerae 1587]
 gi|125622818|gb|EAZ51136.1| sensory box/GGDEF family protein [Vibrio cholerae V51]
          Length = 321

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 19/172 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ QL+  D L+ L N            +      + LS +  DID FK IND FGH  G
Sbjct: 152 QLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKG 211

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+ FL+     V     F GR+GGEEF      +  + A  LA  +R+         +
Sbjct: 212 DEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIRQ-------RFA 264

Query: 212 SGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
             P    + HI + AG++   H +  I+ I  R+DQALY AK++GRNR   +
Sbjct: 265 EHPFFEQNEHIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 316


>gi|117620876|ref|YP_856335.1| PAS/GGDEF domain-containing protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562283|gb|ABK39231.1| PAS:GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 643

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 4/163 (2%)

Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GLLN    + SL +Y     + ++VF D+D FK +NDN+GH  GD+++  ++ +L 
Sbjct: 219 DSLTGLLNRYGLMKSLEAYCGLGGRFALVFMDLDNFKLVNDNYGHKAGDRLLERVAGRLK 278

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
            +    + + RLGG+EF A    S   + A    DL        + +S  P + I  S G
Sbjct: 279 QICPRDVELARLGGDEFTALVPLSHSSDRAQEVADLMLSQMTKPLQLSGVPEVTIGGSIG 338

Query: 224 IA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           IA      +    +I RAD A+Y AK+ GR R   F+     T
Sbjct: 339 IAIYPDDADDGDNLITRADMAMYQAKQMGRLRWQRFTPSMQQT 381


>gi|110802503|ref|YP_699073.1| response regulatory protein (sensory transduction system)
           [Clostridium perfringens SM101]
 gi|110683004|gb|ABG86374.1| GGDEF domain protein [Clostridium perfringens SM101]
          Length = 289

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 71/131 (54%), Gaps = 8/131 (6%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVI----AFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           +++  DID FK++ND +GH VGDK++      L+D    +     ++GR GGEEF     
Sbjct: 162 TVIMADIDSFKKVNDTYGHLVGDKILRDFAKVLNDN---IRENNDWIGRYGGEEFIIVLN 218

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            ++ +    +A  LRKIIE    N     SI IT S G+ E   KE     I  AD+ LY
Sbjct: 219 NTNLENGVKVAEKLRKIIEKMSFNYGD-LSIKITSSFGVCEISEKEDTFDTIKNADEKLY 277

Query: 246 VAKKSGRNRVV 256
           +AK +GRN+ V
Sbjct: 278 MAKMTGRNKTV 288


>gi|89093534|ref|ZP_01166482.1| hypothetical protein MED92_18118 [Oceanospirillum sp. MED92]
 gi|89082224|gb|EAR61448.1| hypothetical protein MED92_18118 [Oceanospirillum sp. MED92]
          Length = 477

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 8/156 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ LLN  AFI    +         + LS++  DID+FK+IND +GH  GD V+  +S
Sbjct: 320 DPLTSLLNRRAFIDRYAAIRNQHQRNGQPLSLLLVDIDHFKEINDRYGHNAGDLVLKGIS 379

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L         V R GG+EF     G+    A  +A  +R  I + + ++++     +T
Sbjct: 380 EILTEAVRPSDLVTRWGGDEFLLLLSGTDSDNARDIAERIRTRI-SLEPDLAAISEQRLT 438

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S G+AE+     +   +  AD  LY AKK+GR+R 
Sbjct: 439 VSIGVAEQRDDFDLDRHVQEADSGLYRAKKAGRDRA 474


>gi|323493757|ref|ZP_08098876.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
 gi|323311991|gb|EGA65136.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
          Length = 377

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 11/179 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           K+L     ++ +LS  D L+ L N    I  L +Y        E L  +  D+DYFKQ+N
Sbjct: 193 KQLSRVNKQLEELSLTDSLTKLPNRRCAIRKLKAYWQESTHNQEPLVCIMIDVDYFKQVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+++  LS  L   F +   V RLGG+EF      +       +A   R  +
Sbjct: 253 DTAGHDAGDRLLVELSHTLADSFRSDDLVCRLGGDEFFVICPNTDLAGGMHIAELTRNKV 312

Query: 204 ENSQINISSGPSI-HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +Q+ +  G S+   +IS G+ ER       + +I  AD A+Y++K +GRNRV    D
Sbjct: 313 --NQMLVPVGESVWRGSISVGVGERTPTMNDFNDLIKEADNAVYLSKSAGRNRVSSTQD 369


>gi|260774060|ref|ZP_05882975.1| pole remodelling regulatory diguanylate cyclase [Vibrio
           metschnikovii CIP 69.14]
 gi|260611021|gb|EEX36225.1| pole remodelling regulatory diguanylate cyclase [Vibrio
           metschnikovii CIP 69.14]
          Length = 415

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 91/165 (55%), Gaps = 10/165 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           S +R+  L+  D L+GL N   F   + +    +SI   D+D+FK++ND +GH +GD+V+
Sbjct: 249 SNDRMFYLANKDVLTGLWNRRFFFDHIYTTKNLISIAMLDLDHFKKVNDLYGHAMGDQVL 308

Query: 156 AFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISS 212
             ++  +  +F       V R GGEEF       S+Q   I+   L ++I+  + ++ S 
Sbjct: 309 QSVAQCMQDIFNHEDNELVARFGGEEFCLY----SKQAFPIVIEKLEQLIKQVASLSFSH 364

Query: 213 GP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              +  +TIS G+   C  + IST++ RAD  LY AK+ GRN+++
Sbjct: 365 NQHTFSVTISVGLF--CGYQDISTLVNRADDMLYEAKRRGRNQLI 407


>gi|261855889|ref|YP_003263172.1| diguanylate cyclase [Halothiobacillus neapolitanus c2]
 gi|261836358|gb|ACX96125.1| diguanylate cyclase [Halothiobacillus neapolitanus c2]
          Length = 353

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 87/164 (53%), Gaps = 9/164 (5%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY-----NEKLS--IVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GL N       L         EK    ++  DID+FK+IND++GH VGDK++ 
Sbjct: 177 ARTDPLTGLANRRGLNELLLQRINLFLQEKTPFCVILADIDHFKRINDSYGHLVGDKILR 236

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPS 215
           F++  L+        V R GGEEFA     +      I+A  LR+ I +S++ ++ SG  
Sbjct: 237 FVARTLMANIKGQDSVIRFGGEEFAIVLPYTQYDGGIIVAQHLRQKIASSRLRLAESGRD 296

Query: 216 I-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +  +TIS G+A     +   +++ RAD AL  AK  GR+RVV  
Sbjct: 297 LGGLTISLGVAAVHTDDTPDSLLRRADDALLKAKAEGRDRVVGL 340


>gi|78778197|ref|YP_394512.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans
           DSM 1251]
 gi|78498737|gb|ABB45277.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans
           DSM 1251]
          Length = 770

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 94/178 (52%), Gaps = 16/178 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYN-EKLSIVFFDIDYFK 140
           ++ K++  + N +  LSR D L+ L N +  I  L       S N +K+SI+F D+D FK
Sbjct: 329 NLQKKVQTAANELEHLSRHDHLTNLPNKTLLIDRLEHSINVASKNGQKVSILFLDLDRFK 388

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
           +IND + H VGDK++  +S +L  +      +GR GG+EF      S+E Q   ++ N +
Sbjct: 389 EINDTYNHEVGDKLLQDISRRLKKLIKEEDTIGRFGGDEFIIILNNSNETQTVEVVTNIM 448

Query: 200 RKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNR 254
             + E   +N      +H T S GI+   +  +   I  +I  AD A+Y AK +G+NR
Sbjct: 449 SAMSEPFNVN---KVKLHTTFSIGISIFPDDGNSRDI--LIRNADTAMYEAKSNGKNR 501


>gi|15892244|ref|NP_359958.1| response regulator PleD [Rickettsia conorii str. Malish 7]
 gi|15619381|gb|AAL02859.1| regulatory components of sensory transduction system [Rickettsia
           conorii str. Malish 7]
          Length = 450

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 76/158 (48%), Gaps = 8/158 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F       I      + KL ++  DID FK +ND +GH  GDKV+  +S
Sbjct: 291 DGLTGLFNRRYFDIHLKQIIEKTNKESIKLYLLMCDIDNFKHVNDTYGHQAGDKVLTIVS 350

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHI 218
             L         + R GGEEF          +A   A  +R  IE    +I      +  
Sbjct: 351 RILKNTLRVTDLIARFGGEEFTILLTDIDISKAIATAERIRVKIEYMNFHIEDQIEPLKT 410

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           TIS G+ +   +E I + I RAD+A+Y AK +G+N+VV
Sbjct: 411 TISIGVTKYKKEESIESFIERADKAMYEAKTTGKNKVV 448


>gi|153821067|ref|ZP_01973734.1| sensory box/ggdef family protein [Vibrio cholerae B33]
 gi|255746319|ref|ZP_05420266.1| sensory box/GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262158200|ref|ZP_06029318.1| sensory box/GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|126521441|gb|EAZ78664.1| sensory box/ggdef family protein [Vibrio cholerae B33]
 gi|255736073|gb|EET91471.1| sensory box/GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262030078|gb|EEY48724.1| sensory box/GGDEF family protein [Vibrio cholerae INDRE 91/1]
          Length = 308

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 19/172 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ QL+  D L+ L N            +      + LS +  DID FK IND FGH  G
Sbjct: 139 QLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKG 198

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+ FL+     V     F GR+GGEEF      +  + A  LA  +R+         +
Sbjct: 199 DEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIRQ-------RFA 251

Query: 212 SGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
             P    + HI + AG++   H +  I+ I  R+DQALY AK++GRNR   +
Sbjct: 252 EHPFFEQNEHIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 303


>gi|258625157|ref|ZP_05720073.1| GGDEF family protein [Vibrio mimicus VM603]
 gi|258582532|gb|EEW07365.1| GGDEF family protein [Vibrio mimicus VM603]
          Length = 338

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 84/155 (54%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D LSGL N  AF     +L      + ++  DID+FK +ND +GH  GD++I  ++ +L 
Sbjct: 182 DSLSGLYNRRAFDGDMFTLIHAAHPVCLIMLDIDHFKALNDTYGHLFGDQIIRAIAKRLQ 241

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221
            +    +   R GGEEFA      S + A   A  +R+ IE   + +  SG S+ +IT S
Sbjct: 242 SLCRDGITAYRYGGEEFALITPNKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGNITAS 301

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ E+   + + +++ RAD  LY AK  GRNRV+
Sbjct: 302 FGVVEKIDGDSLESLVGRADGLLYEAKNLGRNRVM 336


>gi|239905466|ref|YP_002952205.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239795330|dbj|BAH74319.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 372

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 25/178 (14%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+ + N  AF   +G           +LS+   DID+FK+ ND  GH +GD+ +
Sbjct: 189 LTLTDALTAIPNRRAFDEHIGRNIAVADQGQRQLSLFMLDIDHFKRFNDEHGHRIGDQAL 248

Query: 156 AFL-------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             +       +D++  +    +F  R GGEEFA   L  ++ EA  LA+ +R+ IE    
Sbjct: 249 VVVGSILKGFADEMKQLEDREIFPARYGGEEFAVTLLDVAKNEAEELADIIRRKIERYNF 308

Query: 209 NISS------GPSIHITISAGIAERCHKEP-----ISTIIYRADQALYVAKKSGRNRV 255
            I           I I +S G+AE     P     ++ ++  AD+ALY+AK SGRN+V
Sbjct: 309 VIRDPDGQILAAGIKINVSIGVAELLTDCPAAARDVAHLVDAADKALYLAKASGRNQV 366


>gi|241204117|ref|YP_002975213.1| response regulator PleD [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858007|gb|ACS55674.1| response regulator receiver modulated diguanylate cyclase
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 457

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 87/176 (49%), Gaps = 11/176 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
            L  S  +  +L+  D L+GL N     + L        +    LS++  DID FK +ND
Sbjct: 280 RLRASVKQTIELAVTDPLTGLYNRRYLDNHLNVLFNRSMARGRPLSVLITDIDRFKHVND 339

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+   S ++           R GGEEF      +S + AA +A  LR  IE
Sbjct: 340 TYGHDGGDEVLREFSSRVRSTIRGADLACRYGGEEFVVVMPDTSPEIAAAVAERLRAAIE 399

Query: 205 NSQINIS-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++   +  SG ++ +T S GIA R      P   ++ +AD ALY AK +GRNRVV 
Sbjct: 400 SAPFMLKHSGEALSVTASFGIASRIASVLTP-GQLMKQADLALYEAKNTGRNRVVA 454


>gi|153824779|ref|ZP_01977446.1| sensory box/ggdef family protein [Vibrio cholerae MZO-2]
 gi|149741735|gb|EDM55764.1| sensory box/ggdef family protein [Vibrio cholerae MZO-2]
          Length = 308

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 19/172 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ QL+  D L+ L N            +      + LS +  DID FK IND FGH  G
Sbjct: 139 QLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKG 198

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+ FL+     V     F GR+GGEEF      +  + A  LA  +R+         +
Sbjct: 199 DEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIRQ-------RFA 251

Query: 212 SGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
             P    + HI + AG++   H +  I+ I  R+DQALY AK++GRNR   +
Sbjct: 252 EHPFFEQNEHIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 303


>gi|153801376|ref|ZP_01955962.1| sensory box/GGDEF family protein [Vibrio cholerae MZO-3]
 gi|153828092|ref|ZP_01980759.1| sensory box/GGDEF family protein [Vibrio cholerae 623-39]
 gi|297580011|ref|ZP_06941938.1| sensory box/GGDEF family protein [Vibrio cholerae RC385]
 gi|124123042|gb|EAY41785.1| sensory box/GGDEF family protein [Vibrio cholerae MZO-3]
 gi|148876501|gb|EDL74636.1| sensory box/GGDEF family protein [Vibrio cholerae 623-39]
 gi|297535657|gb|EFH74491.1| sensory box/GGDEF family protein [Vibrio cholerae RC385]
          Length = 321

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 19/172 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ QL+  D L+ L N            +      + LS +  DID FK IND FGH  G
Sbjct: 152 QLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKG 211

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+ FL+     V     F GR+GGEEF      +  + A  LA  +R+         +
Sbjct: 212 DEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIRQ-------RFA 264

Query: 212 SGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
             P    + HI + AG++   H +  I+ I  R+DQALY AK++GRNR   +
Sbjct: 265 EHPFFEQNEHIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 316


>gi|15801598|ref|NP_287615.1| hypothetical protein Z2163 [Escherichia coli O157:H7 EDL933]
 gi|15831398|ref|NP_310171.1| hypothetical protein ECs2144 [Escherichia coli O157:H7 str. Sakai]
 gi|168756185|ref|ZP_02781192.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4401]
 gi|168761368|ref|ZP_02786375.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4501]
 gi|168768926|ref|ZP_02793933.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4486]
 gi|168774227|ref|ZP_02799234.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4196]
 gi|168781516|ref|ZP_02806523.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4076]
 gi|168799331|ref|ZP_02824338.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC508]
 gi|195937029|ref|ZP_03082411.1| hypothetical protein EscherichcoliO157_11327 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208811056|ref|ZP_03252889.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4206]
 gi|208816270|ref|ZP_03257449.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4045]
 gi|208821344|ref|ZP_03261664.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4042]
 gi|209399358|ref|YP_002270535.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4115]
 gi|217329174|ref|ZP_03445254.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. TW14588]
 gi|254793082|ref|YP_003077919.1| hypothetical protein ECSP_2022 [Escherichia coli O157:H7 str.
           TW14359]
 gi|261224499|ref|ZP_05938780.1| hypothetical protein EscherichiacoliO157_07847 [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261257068|ref|ZP_05949601.1| hypothetical protein EscherichiacoliO157EcO_14768 [Escherichia coli
           O157:H7 str. FRIK966]
 gi|12515121|gb|AAG56227.1|AE005351_6 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13361610|dbj|BAB35567.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187770032|gb|EDU33876.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4196]
 gi|189000908|gb|EDU69894.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4076]
 gi|189356746|gb|EDU75165.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4401]
 gi|189361925|gb|EDU80344.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4486]
 gi|189368164|gb|EDU86580.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4501]
 gi|189378216|gb|EDU96632.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC508]
 gi|208724562|gb|EDZ74270.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4206]
 gi|208732918|gb|EDZ81606.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4045]
 gi|208741467|gb|EDZ89149.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4042]
 gi|209160758|gb|ACI38191.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4115]
 gi|209770200|gb|ACI83412.1| hypothetical protein ECs2144 [Escherichia coli]
 gi|209770202|gb|ACI83413.1| hypothetical protein ECs2144 [Escherichia coli]
 gi|209770206|gb|ACI83415.1| hypothetical protein ECs2144 [Escherichia coli]
 gi|217317613|gb|EEC26041.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. TW14588]
 gi|254592482|gb|ACT71843.1| conserved protein [Escherichia coli O157:H7 str. TW14359]
 gi|320190013|gb|EFW64664.1| hypothetical protein ECoD_03191 [Escherichia coli O157:H7 str.
           EC1212]
 gi|326340591|gb|EGD64388.1| hypothetical protein ECoA_03959 [Escherichia coli O157:H7 str.
           1044]
 gi|326340842|gb|EGD64635.1| hypothetical protein ECF_03383 [Escherichia coli O157:H7 str. 1125]
          Length = 296

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY---NEKLSI--VFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S        E L++  +  DID FK +ND +GH +GD V+  L
Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNTEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      ++++EA      + ++++N  I  S G  I+I
Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 247

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +E +  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 248 TVTAGVSRAFPEETLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291


>gi|83749389|ref|ZP_00946384.1| Hypothetical Protein RRSL_00679 [Ralstonia solanacearum UW551]
 gi|83723966|gb|EAP71149.1| Hypothetical Protein RRSL_00679 [Ralstonia solanacearum UW551]
          Length = 562

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 18/189 (9%)

Query: 84  YISGSILKELFISYNRIS--QLSRI------DCLSGLLNHSAFISSL---GSYNEKLSIV 132
           YI    LK   +   R+S  +++R+      D L+GL N      +L      ++  S V
Sbjct: 358 YIEAHRLKRALLRGTRLSSSRMARLNHEALTDPLTGLYNRRGVADALRLLAGRHQPFSAV 417

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK+IND  GH VGD+V+  ++  +          GR+GGEEF      ++ + A
Sbjct: 418 TLDVDHFKRINDRDGHDVGDQVLKHIAALIREQARHDDITGRIGGEEFILLLPDATPEGA 477

Query: 193 AILANDLRKIIENSQINISSGPSIH-ITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250
              A  LR+ +E         P+   +T+S G+A+     E +  ++  +D ALY AK+S
Sbjct: 478 FKTAERLRRAVE-----ARPNPTGQVVTVSLGVADYPGASEEVDAVLKLSDLALYQAKRS 532

Query: 251 GRNRVVCFS 259
           GRNR V + 
Sbjct: 533 GRNRTVLYQ 541


>gi|319788293|ref|YP_004147768.1| diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466805|gb|ADV28537.1| diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1]
          Length = 359

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 20/209 (9%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           ILV     ++ +  I ++  ++     +  F+   ++  +++ D L+GL N  AF   + 
Sbjct: 125 ILVVRTMFIVTTNIIGIITAWVLDQEGRGNFLMARQLRGMAQRDYLTGLPNRRAFAERID 184

Query: 124 SYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRL 175
           +  ++       L I   D+D+FK  ND +GHP GD+V+  +   L      P+  V R 
Sbjct: 185 AVWQQARGEQRPLGIALMDVDWFKAYNDRYGHPAGDRVLRAVGRVLGAHARGPLDMVARH 244

Query: 176 GGEEFAA----AALGSSEQEAAILANDLRKI-IENSQINISSGPSIHITISAGIA---ER 227
           GGEEF      A L   E   A +  D+  + IE++  ++   P   +TIS G+     +
Sbjct: 245 GGEEFVCVWYDATLAEVETTLAAIHADIASLGIEHAGSHV---PGNRLTISIGLHYLYPQ 301

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVV 256
             K P   ++ RADQALY AK SGR+  V
Sbjct: 302 AGKPPTEALL-RADQALYEAKASGRHTTV 329


>gi|300693374|ref|YP_003749347.1| signal transduction ggdef domain transmembrane protein [Ralstonia
           solanacearum PSI07]
 gi|299075411|emb|CBJ34706.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum PSI07]
          Length = 489

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 102/236 (43%), Gaps = 22/236 (9%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           + +F+A      +I+  +     + G+         LV++   ++L + Y+    L    
Sbjct: 263 YPLFVAVGTATEDIYANWKARAWWIGV---------LVVLFNMVTLAMAYLFAQHLDRRI 313

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147
               R ++L+  D L+GL N  A    L +         + LS++  D+D+FK  ND++G
Sbjct: 314 EEQRRHAELAATDALTGLANRRALDERLDAEWRRAARERQPLSVLMIDVDHFKAYNDHYG 373

Query: 148 HPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           HP GD  I  ++  +      P     R GGEEF     GS    A ++A  +R  I   
Sbjct: 374 HPDGDVAIQAVARCIQANLRRPGDLAARYGGEEFCVVLPGSDLGSANVIAETIRHAILAL 433

Query: 207 QINISSGPSIHITISAGIAERC-----HKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I  +   S  +T+S G A         ++  +T+   AD  LY AK  GRNR V 
Sbjct: 434 NIPHTQSASAVLTVSIGAASGTPTSSGEQQRAATLTKAADAQLYRAKTLGRNRTVS 489


>gi|242277740|ref|YP_002989869.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
 gi|242120634|gb|ACS78330.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
          Length = 555

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 82/171 (47%), Gaps = 16/171 (9%)

Query: 107 DCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+GL N   ++   G+          +  S++  DID+FK IND +GH VGD V+  +
Sbjct: 379 DQLTGLPNRR-YLMKEGTRLVDIAIRAGQPCSLMIMDIDHFKVINDTYGHTVGDIVLQQI 437

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           S     V  +   + R GGEEF   A GS       LA  LR+ +E    N    P +  
Sbjct: 438 SKAFQEVVRSSDIIARYGGEEFVVVAPGSDIDSGRTLAERLRQSVEARIFNNDEQP-LTC 496

Query: 219 TISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           TIS G++          +    ++ RAD ALY AK +GRNR +C ++  N 
Sbjct: 497 TISIGVSHYATDIKFGVDAYEDMLARADNALYKAKDTGRNR-ICIAEPHNK 546


>gi|50085379|ref|YP_046889.1| hypothetical protein ACIAD2279 [Acinetobacter sp. ADP1]
 gi|49531355|emb|CAG69067.1| conserved hypothetical protein; putative membrane protein
           [Acinetobacter sp. ADP1]
          Length = 352

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 2/123 (1%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D+FK+IND +GH  GD  +A +S  L  + G      R GG+E A   +  S +
Sbjct: 227 LILLDVDHFKKINDTYGHEAGDYFLAEMSSILRELIGPKDTPARFGGDELAIIVVDQSNE 286

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           E  +LA  ++  I+  QI + S P    T+S GIA     + +S     AD+ALY  K++
Sbjct: 287 EIILLARRIKNSIQ--QIRLQSDPEFSTTVSIGIASAETVDTVSAWFALADKALYQVKRN 344

Query: 251 GRN 253
           GRN
Sbjct: 345 GRN 347


>gi|229520463|ref|ZP_04409888.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
 gi|229342561|gb|EEO07554.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
          Length = 489

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 12/188 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSI 131
           + ++L+  +++G +L  L   ++R   +QL+  D ++GLLN     S L    +++ L+I
Sbjct: 306 LVVALVYLFLTG-VLIYLNTRWDRQHYAQLAARDPMTGLLNRRGMESFLKGKRHSQYLAI 364

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQ 190
              DID FKQIND +GH +GD+VI ++ +Q+     +   V R GGEEF         EQ
Sbjct: 365 AVLDIDDFKQINDAYGHDMGDRVICYIGEQIENHIRSSDAVARFGGEEFVVYVTAKEKEQ 424

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAK 248
              I+      +   S + +  G     T+S GI   E         +   AD+ LYVAK
Sbjct: 425 ITRIMQRIFDAVCRESPLILEPG----FTVSGGIEVVESTTDRSFEDLFKAADEKLYVAK 480

Query: 249 KSGRNRVV 256
            SG+N+++
Sbjct: 481 TSGKNQLI 488


>gi|167587527|ref|ZP_02379915.1| diguanylate cyclase (GGDEF domain) [Burkholderia ubonensis Bu]
          Length = 468

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 8/176 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYN-EKLSIVFFDIDYFKQI 142
           L+EL  +  ++  ++  D L+G  N   F+       +L   N    S++  D+D+FK I
Sbjct: 292 LQELQRTNEKLEHMAATDPLTGAANRRHFLDRVETEIALAKRNGAPFSVLSLDLDHFKSI 351

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND++GH  GD+V+     + +        V R+GGEEF      +    A  +   +R  
Sbjct: 352 NDSYGHQAGDEVLQRFVKKCLDAIRPYDGVARVGGEEFMVLLPQAGLDTARSIGERIRAA 411

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           I  +      G  I +T+S G++E     E +  I+ + D+ LY AK  GRNRVV 
Sbjct: 412 IAGTPFEAGIGKPIAVTVSVGVSEFGRDGETVDAILRKVDERLYRAKDQGRNRVVA 467


>gi|34499193|ref|NP_903408.1| hypothetical protein CV_3738 [Chromobacterium violaceum ATCC 12472]
 gi|34105044|gb|AAQ61400.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 393

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 81/176 (46%), Gaps = 8/176 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           EL  +  RI +L+  D L+G+ N  A    L    ++        ++   D+DYFK+IND
Sbjct: 217 ELDATLLRIRELTVRDPLTGVFNMRALTPELERLLQRSEEQGAPFALSIIDLDYFKRIND 276

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GHP GD+V+  L   +           R GGEEF       +  E     + LR  I 
Sbjct: 277 ECGHPTGDEVLQQLCRIVSATLKPGEVFARYGGEEFLLVTPDCNGGEHFRRMDALRSAIA 336

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +      +G  + +TIS G+A       +  ++ RAD ALY+AK  GRNRV    D
Sbjct: 337 DYDWTPLTG-ILPVTISCGVASWYPGTDLGAMLQRADSALYMAKAQGRNRVCSEKD 391


>gi|332701348|ref|ZP_08421436.1| diguanylate cyclase [Desulfovibrio africanus str. Walvis Bay]
 gi|332551497|gb|EGJ48541.1| diguanylate cyclase [Desulfovibrio africanus str. Walvis Bay]
          Length = 286

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 94/185 (50%), Gaps = 16/185 (8%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLN----HSAFISSLGSYNE---KLSIVF 133
           L G+ +G   KE     + ++QLS +D L+G  N    H A      +Y      +S+V 
Sbjct: 86  LFGWYAGR--KE-----DHLAQLSVMDHLTGTYNTRFFHRALEREFANYTRYSLPMSLVL 138

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D+FK IND +GH  GD V++ +++ +         V R+GGEEFA    G++   A 
Sbjct: 139 LDLDHFKLINDTYGHQSGDVVLSEVAEIICSTVRQGDTVARVGGEEFAVIMPGTATDNAL 198

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSG 251
            ++  +R+ I++   +   G +  +  S G+A  +R      +    R D+ALY AK+ G
Sbjct: 199 AVSERIREAIKSRPAHSLDGTTFTVRASLGVAGTDRICPRSATEFFARVDRALYNAKEQG 258

Query: 252 RNRVV 256
           R+R V
Sbjct: 259 RDRSV 263


>gi|330500946|ref|YP_004377815.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328915232|gb|AEB56063.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 383

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 11/173 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
           + + Q +  D L+GL N  A +  L    E+       LSI   D+D+FK IND+ GH V
Sbjct: 212 SELRQTALRDTLTGLPNRLAILEQLTDELERARRQHTPLSIAMLDLDHFKLINDSHGHLV 271

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+   ++ L         +GR GGEEF     G+    A  L + LR+ +      I
Sbjct: 272 GDAVLRHCANHLQQRLRRNDSIGRYGGEEFLLVLPGTDANGALELVDQLRQSLTQHPAQI 331

Query: 211 SSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRN-RVVCFSD 260
            S  +I ++ SAG+  +     E I+ ++ +AD ALY AK +GRN +V+  +D
Sbjct: 332 DS-KTIALSFSAGVYGSSNSIAEDITGMLLKADTALYRAKHAGRNTQVLATAD 383


>gi|254561633|ref|YP_003068728.1| diguanylate cyclase [Methylobacterium extorquens DM4]
 gi|254268911|emb|CAX24872.1| putative diguanylate cyclase with GGDEF motif; putative membrane
           protein [Methylobacterium extorquens DM4]
          Length = 498

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 10/186 (5%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE---KLSI 131
           ++LL  + G  L+        +++L++ D L+GL N     + F  + G+       L++
Sbjct: 310 TVLLSLLFGRELRRSAAMQAELARLAQTDVLTGLPNRRHFETVFAQAWGTSRRTGAPLAL 369

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQ 190
           +  D D+FK+ ND +GH VGD V+  L+D L      P   V R+GGEEFA    G+   
Sbjct: 370 ILIDADHFKRYNDRYGHAVGDAVLRGLADSLSASVRRPGDLVARVGGEEFAVLLPGTDHD 429

Query: 191 EAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            A  ++  + + I   +  ++  GP   +T+S G+A             RAD ALY AK 
Sbjct: 430 GAMRISETIHRAIAGFAMPSVGIGPGT-VTVSLGLAVDSGGGTAEDFYRRADVALYEAKA 488

Query: 250 SGRNRV 255
            GRN+ 
Sbjct: 489 GGRNQT 494


>gi|254849856|ref|ZP_05239206.1| sensory box/GGDEF family protein [Vibrio cholerae MO10]
 gi|254845561|gb|EET23975.1| sensory box/GGDEF family protein [Vibrio cholerae MO10]
          Length = 642

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 18/174 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS--IVFFDIDYFKQINDNFGH 148
           NR+ +LS  D L+ L N   F  ++         Y ++    +   DID+FK+IND FGH
Sbjct: 473 NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGH 532

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+  ++  +        F+ R+GGEEFA     +S +EA  + N +R       +
Sbjct: 533 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVR-------L 585

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +I+S     +T+S G+ + C     S    RAD ALY +K SGRN++   + +E
Sbjct: 586 HIASLHHQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTAME 637


>gi|187479495|ref|YP_787520.1| signaling protein [Bordetella avium 197N]
 gi|115424082|emb|CAJ50635.1| Putative signaling protein [Bordetella avium 197N]
          Length = 265

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 13/176 (7%)

Query: 88  SILKELFISYNR-ISQLSRIDCLSGLLNHSAFIS------SLGSYNEK-LSIVFFDIDYF 139
           S++++L    NR + + SR D L+GLLN  A +            N++   +   D+D+F
Sbjct: 88  SMMRDL----NRTLEETSRRDPLTGLLNRRALMDIIRMEVRRSDANKRPFVLAMLDVDHF 143

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND +GH  GD+V+  L+  L          GR GGEEF      +  +    + + +
Sbjct: 144 KAVNDRYGHEAGDRVLVELAALLQRSMRAGDLCGRWGGEEFLLVLPDTDLETGQGVMDRV 203

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              +    I+++ G ++ +T S G+A+      +S  + RADQALY+AK  GR+RV
Sbjct: 204 VGAVRGLAIDVA-GETLRLTASVGMADHQMGATLSDALNRADQALYLAKHEGRDRV 258


>gi|160877450|ref|YP_001556766.1| PAS/PAC and Chase sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|160862972|gb|ABX51506.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella baltica OS195]
 gi|315269652|gb|ADT96505.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella baltica OS678]
          Length = 1215

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 57/182 (31%), Positives = 95/182 (52%), Gaps = 10/182 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + E  +S  RI  L+  D L+ L N  +  S L        + + +++++F D+D+FK I
Sbjct: 776 ISERKVSEERIHFLAHHDSLTLLPNRLSLQSRLEVVFREALASDSQIAVMFIDMDHFKNI 835

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH VGD+++  ++ +L  + G    V RLGG+EF  A   ++  E A LA  LR  
Sbjct: 836 NDTLGHHVGDQLLLEVARRLKNIVGDTDTVARLGGDEFVVALSDTNHDEVASLAEALRSG 895

Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +  SQ  + +  ++H + S GI+      + +  ++  AD A+Y AK +GRN    F+  
Sbjct: 896 L--SQTYVINNQALHSSPSIGISLFPTDGDSVEALMKNADMAMYRAKSAGRNNYQFFTAA 953

Query: 262 EN 263
            N
Sbjct: 954 MN 955


>gi|95928325|ref|ZP_01311073.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
 gi|95135596|gb|EAT17247.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
          Length = 403

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 10/166 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +L+  D ++GL +  AF+    S       Y    S +  DID+FK++ND +GH  
Sbjct: 228 QKLKELASTDVVTGLQSRRAFMEEAKSLFQIAERYQRPFSFLIIDIDHFKKVNDTYGHLG 287

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  L   +         +GR+GGEEFA     +     A L   L + +  ++I I
Sbjct: 288 GDVVLVELGKIMSSCLRATDILGRIGGEEFAVILPETGPDHTAELIERLLEKVRTTEIRI 347

Query: 211 SSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNR 254
                + +T+S G+A      PI    ++  AD+ALY AK  GRNR
Sbjct: 348 DDDTLVSVTVSIGVAT-VPPLPIHVGKVMAAADKALYQAKSDGRNR 392


>gi|45657010|ref|YP_001096.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|45600247|gb|AAS69733.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 311

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 99/206 (48%), Gaps = 31/206 (15%)

Query: 82  LGYISGSILKELFISYNRISQLSR--------------IDCLSGLLNHSAFISSLGS--- 124
           L Y++G  + E   +  +ISQL+                D L+ L N  AF + L S   
Sbjct: 110 LVYVTGRDITETIEANRQISQLATELKEANDLLFEQATTDPLTKLKNRRAFTNDLHSLLR 169

Query: 125 --YNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               EK  LS++  D+D+FK  ND FGH  GDKV+  L+  L     +   +GR GGEEF
Sbjct: 170 FMQQEKSFLSLLMIDVDHFKTYNDQFGHLAGDKVLVCLAKVLENTLRSNDLLGRFGGEEF 229

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA----ERCHKEPIST- 235
            AA   + E+++  +   L   +        S     ITIS GI+    E+   +  ST 
Sbjct: 230 VAALPNTCEKKSIEIGERLVNAVREFNWEYRS-----ITISVGISTSDFEKKQLDVDSTN 284

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDI 261
           +I +AD+ALY +K +GRN+    S I
Sbjct: 285 LIEKADKALYQSKVNGRNKATHSSQI 310


>gi|37679644|ref|NP_934253.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37198388|dbj|BAC94224.1| GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 419

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 90/169 (53%), Gaps = 26/169 (15%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++L+  D L+G +N  A  + L           E+LS+++ D+D FK++ND +GH +GD 
Sbjct: 249 AELAHRDALTGAMNRHAVRTWLEKKARTVRWGQEQLSVLYLDLDKFKRVNDRYGHQMGDD 308

Query: 154 VIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           ++     + V+V  + +  G    R GGEEF      ++ Q+A   A  +RK       N
Sbjct: 309 ILR----EFVLVVASSLEEGERLVRWGGEEFIVFLPETTLQQAVEKAEMIRK-------N 357

Query: 210 ISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S+   +H   +T S G+A+   +E ++  + RAD ALY AK  GRNRV
Sbjct: 358 VSNHLWVHGGMLTCSIGVAQ-MQEERVTEFLARADDALYQAKHRGRNRV 405


>gi|254243039|ref|ZP_04936361.1| hypothetical protein PA2G_03827 [Pseudomonas aeruginosa 2192]
 gi|126196417|gb|EAZ60480.1| hypothetical protein PA2G_03827 [Pseudomonas aeruginosa 2192]
          Length = 671

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 79/161 (49%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q +  D L+GL N +A    L     +       L +   DID+FK+IND+FGH  GDKV
Sbjct: 509 QKALTDPLTGLPNRAALSERLEQEVARRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDKV 568

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++ +L        F+ R GGEEF      +S +    L   LR  I     +    P
Sbjct: 569 LKIIAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHFKGEP 628

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT SAGI      E    +  RADQALY AK++GR+R+
Sbjct: 629 -LSITCSAGITAFEGNEAGEAVFERADQALYRAKRAGRDRL 668


>gi|309780693|ref|ZP_07675434.1| GGDEF domain protein [Ralstonia sp. 5_7_47FAA]
 gi|308920375|gb|EFP66031.1| GGDEF domain protein [Ralstonia sp. 5_7_47FAA]
          Length = 510

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 17/213 (7%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLL 113
           L P+  L +I+     L  +S++++   G ++    L+   ++ N + +L++ D L+GL 
Sbjct: 297 LAPWQRLSWIV----GLSSLSVSLAFCAGVWLLAFALRGRVMAENHLRELTQTDPLTGLK 352

Query: 114 NHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N  A           L   + +LS++F D D+FK+ ND  GH  GD  + +L+ Q +   
Sbjct: 353 NRRALDVALENEWDRLQRNDSRLSVLFIDADHFKRYNDAHGHAQGDVALQYLA-QCISKH 411

Query: 167 GTPM--FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG- 223
                    R GGEEF      + E  A  +A  +R  +E +  ++        T+S G 
Sbjct: 412 ARRRGDLAARYGGEEFVVLLPDTDEAGATRIAEAIRAEVEGAGAHVPDAGVAPFTVSVGC 471

Query: 224 -IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             A R      + +   AD ALY AK+ GRNRV
Sbjct: 472 ATARRASLPSRNALTKAADDALYEAKRKGRNRV 504


>gi|319427137|gb|ADV55211.1| diguanylate cyclase [Shewanella putrefaciens 200]
          Length = 578

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 15/176 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  ++  D L+G  N     + +         +   LSIV FDID FKQ ND +GH +G
Sbjct: 400 QVKAMAETDGLTGCYNRRYLDNQIEKELLYANDHQVPLSIVMFDIDNFKQFNDRYGHVIG 459

Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D+ +  + +    +   P   + R GGEEF         ++A  +A  LR+ I + +I  
Sbjct: 460 DQCLKQIVNAAKSILQRPTDTLARYGGEEFMILLPSRHLEDAYKIAEHLRETIIDLKIPH 519

Query: 211 SSGPSIHI-TISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              P   I TISAGI   C   P     +++I RAD+ALY AK +GRNR     +I
Sbjct: 520 EDSPHAGIVTISAGIT--CWHPPERLDTNSLIKRADEALYHAKLTGRNRTETLINI 573


>gi|91201479|emb|CAJ74539.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 344

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 92/187 (49%), Gaps = 15/187 (8%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---------KLS 130
           L L  +     +EL  +  ++ QLSR D L+GL N   F   L  +NE          LS
Sbjct: 156 LTLAQVLEKTNQELQQANEKLHQLSRTDSLTGLANRRFFDEML--HNEWKQSVRLAKPLS 213

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSE 189
           ++  DID+FK  ND +GH  GD+ +  +S  ++         + R GGEEF A    + E
Sbjct: 214 LLMIDIDFFKNYNDTYGHQKGDECLKRVSMAILSALKRECDIIARYGGEEFVALLSDTDE 273

Query: 190 QEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYV 246
             A ++A  ++  IE   I +  S  S  IT+S GI+        S   +I +AD+ALY+
Sbjct: 274 SGAVMVAKAMQSNIEAMNIPHKDSNASGRITVSIGISNEVPSAASSPEKLISKADKALYL 333

Query: 247 AKKSGRN 253
           AK  GRN
Sbjct: 334 AKYEGRN 340


>gi|92117963|ref|YP_577692.1| response regulator PleD [Nitrobacter hamburgensis X14]
 gi|91800857|gb|ABE63232.1| response regulator receiver modulated diguanylate cyclase
           [Nitrobacter hamburgensis X14]
          Length = 457

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 85/166 (51%), Gaps = 11/166 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N     S L +  E+       L+++  DID+FK IND +GH  GD V
Sbjct: 290 EMAVTDGLTGLHNRRYMESHLVTLAEQASLRGKPLALMMLDIDFFKSINDGYGHDAGDDV 349

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   + ++           R GGEEF      ++   A ++A  LR+ I      +  G 
Sbjct: 350 LREFAVRIRKSIRGIDLACRYGGEEFVIVMPETNLHVAGMVAERLRRSIAGEPFAVHKGA 409

Query: 215 S-IHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             I +TIS G++  ER   EP++ ++ RAD ALY AK  GRNRVV 
Sbjct: 410 KRIDVTISIGLSILER-KGEPVADVLKRADIALYRAKHDGRNRVVA 454


>gi|78060223|ref|YP_366798.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. 383]
 gi|77964773|gb|ABB06154.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. 383]
          Length = 780

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 99/191 (51%), Gaps = 16/191 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEKLSIVFFDIDYFK 140
           +S SI+ +   +  RI QL+  D L+GL N + F++    SL   ++ L ++F D+D FK
Sbjct: 327 LSWSIVTQQAEAEARIHQLAHHDSLTGLPNRATFLAEFDASLRRSDKVLGLLFIDLDGFK 386

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDL 199
            IND  GH  GD+V+  + ++L      P M +GR+GG+EF A  L  ++ + A+ A   
Sbjct: 387 LINDACGHSAGDEVLRQVGERLRGQCPEPGMMLGRIGGDEF-AVLLRDTDADRAMGAAA- 444

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-----HKEPISTIIYRADQALYVAKKSGRNR 254
            ++++      +  P     I A I   C     H      ++ RAD ALY AKK+G+  
Sbjct: 445 -RLVDTLVAPYAPSPDRQFRIGASIG--CVLAPDHGNDGGVLLSRADMALYAAKKAGKGT 501

Query: 255 VVCFS-DIENN 264
              FS D+E +
Sbjct: 502 YRMFSPDMETS 512


>gi|15807849|ref|NP_285505.1| GGDEF family protein [Deinococcus radiodurans R1]
 gi|6460485|gb|AAF12191.1|AE001862_17 GGDEF family protein [Deinococcus radiodurans R1]
          Length = 362

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 70/153 (45%), Gaps = 3/153 (1%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D LS L N   F   + +      +   DID+FKQ+ND  GH  GD V+  L + L    
Sbjct: 205 DALSTLANRRQFDLDIQTLGPDDVLCLIDIDHFKQVNDVHGHEAGDGVLVQLGELLPRCL 264

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                  R GGEEFA     +   + A+L   LR  +  +   +  G    +T+S G+A 
Sbjct: 265 RASDRAYRYGGEEFAVLFRMTGAVDPAVLGERLRAQVAQTAFTVLGGAP--LTVSVGLAR 322

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           R     +     RAD ALY AK+ GRNR V + 
Sbjct: 323 RGEGS-VGDCFRRADVALYAAKRGGRNRAVVWG 354


>gi|332703622|ref|ZP_08423710.1| diguanylate cyclase with GAF sensor [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553771|gb|EGJ50815.1| diguanylate cyclase with GAF sensor [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 492

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 106/217 (48%), Gaps = 14/217 (6%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISI-TISLLLGYISGSILKELFISYNRISQLSRIDCL 109
              GLTPF  L     E +SL    + TI+  + +++ ++     + Y  +  ++  D L
Sbjct: 267 LRTGLTPFGLLALSSKEPVSLARDQVQTITAAVQHLALALKN--ALLYREVQTMADFDGL 324

Query: 110 SGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           + + N  +F   L         Y + +S++  D+D+FK+IND+FGH  GD V+  L   L
Sbjct: 325 TRIHNRQSFDRRLREELARHKRYQQPISLLMLDLDHFKRINDSFGHEAGDMVLRELGRIL 384

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                      R GGEEF      + E  A  LA  LR  I   +I    G +  +T+S 
Sbjct: 385 SESMRETDIAARYGGEEFVVILPHTDESNAHTLAQRLRAAI-CGKIFHFHGQTFQVTVSI 443

Query: 223 GIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           GI+  +    +  + ++  ADQALY+AK++GRN +VC
Sbjct: 444 GISSIDAASVDLDTNLVREADQALYLAKRNGRN-MVC 479


>gi|298717316|ref|YP_003729958.1| inner membrane protein YfiN [Pantoea vagans C9-1]
 gi|298361505|gb|ADI78286.1| Inner membrane protein yfiN [Pantoea vagans C9-1]
          Length = 414

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 82/154 (53%), Gaps = 10/154 (6%)

Query: 107 DCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N SAF + L         +E+ +++F D D FK INDN+GH  GD+V+  +  
Sbjct: 262 DPLTGLANRSAFSARLTQRLDQPHEHERFALLFLDGDRFKSINDNWGHAAGDEVLKAIGS 321

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINISSGPSIHI 218
           +L+ +      V RLGG+EF  A L SS+   A L   +++I +     I I+ G  +  
Sbjct: 322 RLLSLASEQDLVARLGGDEF--AMLVSSQTSEAQLQQLMQRIDDTIGEHILIAEGMPVTT 379

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           +++ G A     + + +I+ RAD  +Y  K+  R
Sbjct: 380 SVTIGYAWSQPGDTVESILERADMNMYKNKRKNR 413


>gi|326319467|ref|YP_004237139.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323376303|gb|ADX48572.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 332

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 12/179 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYN-EKLSIVFFDIDYFKQIND 144
           L+EL    ++  + +  D L+GL N    +      LG    + +++   DID+FK +ND
Sbjct: 143 LRELRQERDKAMKSALSDELTGLSNRRYAMDFLHQKLGPNKAQAMAVAVIDIDHFKAVND 202

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD V+   + +L    G    V R+GGEEF     G+      + A+ + + + 
Sbjct: 203 RFGHAGGDLVLKDFAARLAEAAGRDDMVARIGGEEFLLVLQGAR----TLGADSVLRCLG 258

Query: 205 NSQINIS---SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            S   +S     P    + SAG+A     E +  ++ RAD+ALY AK++GRNRVV  ++
Sbjct: 259 ASLDTVSPLPEAPEFRYSCSAGVALVRPGETVGEVLRRADEALYQAKRAGRNRVVIHAE 317


>gi|229526510|ref|ZP_04415914.1| sensory box/GGDEF family protein [Vibrio cholerae bv. albensis
           VL426]
 gi|229336668|gb|EEO01686.1| sensory box/GGDEF family protein [Vibrio cholerae bv. albensis
           VL426]
          Length = 321

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 19/172 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ QL+  D L+ L N            +      + LS +  DID FK IND FGH  G
Sbjct: 152 QLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKG 211

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+ FL+     V     F GR+GGEEF      +  + A  LA  +R+         +
Sbjct: 212 DEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIRQ-------RFA 264

Query: 212 SGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
             P    + HI + AG++   H +  I+ I  R+DQALY AK++GRNR   +
Sbjct: 265 EHPFFEQNEHIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 316


>gi|167034559|ref|YP_001669790.1| diguanylate cyclase [Pseudomonas putida GB-1]
 gi|166861047|gb|ABY99454.1| diguanylate cyclase [Pseudomonas putida GB-1]
          Length = 386

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 91/191 (47%), Gaps = 10/191 (5%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----- 128
           ++I  + ++ Y  G +L     S +R+  L+  D L+G  N  A +   G   ++     
Sbjct: 188 VAIGTATVMMYSIGLVLLAKERSESRLQHLALRDVLTGTYNRRAILERFGVELDRARDQQ 247

Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             L++   DID+FK+IND +GH  GD+V+     QL         +GR GGEEF     G
Sbjct: 248 GSLAVAMIDIDHFKRINDLYGHLAGDEVLCHCVRQLQQRLRQGDSLGRYGGEEFLLLLPG 307

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQAL 244
           +    A      LR+ I  S     +G  I +  S G+     C  +  ++++ +AD AL
Sbjct: 308 TDRTGAMAALQGLREAIARSPARF-AGDQIELRFSVGLWCGVPCPGDSTASLLAQADAAL 366

Query: 245 YVAKKSGRNRV 255
           Y AK +GRN V
Sbjct: 367 YQAKAAGRNTV 377


>gi|94265113|ref|ZP_01288878.1| GGDEF:GAF [delta proteobacterium MLMS-1]
 gi|93454400|gb|EAT04698.1| GGDEF:GAF [delta proteobacterium MLMS-1]
          Length = 707

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 16/163 (9%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N   F S L +  E+        ++  FDID+FK++ND +GH  GD V+   +
Sbjct: 543 DGLTSLYNRRHFFSRLTAQCEEYRRSGKPFAVAMFDIDHFKRLNDTYGHLTGDCVLKEFA 602

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN--ISSGPSIH 217
             L   F     V R GGEEFA   + +  Q AA  A    +I+E+++ +     G S+ 
Sbjct: 603 TLLSQGFRAFDVVARYGGEEFAVMLIDADRQTAAATAQ---RILESTRRHHFKCEGNSLQ 659

Query: 218 ITISAG---IAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256
           IT+S G   + E     P    ++  ADQ LY AK +GR+RVV
Sbjct: 660 ITVSGGLVEVGELADGAPTPEALVEEADQRLYRAKNAGRDRVV 702


>gi|62182973|ref|YP_219390.1| diguanylate cyclase/phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62130606|gb|AAX68309.1| putative diguanylate cyclase/phosphodiesterase domain 1 [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322717479|gb|EFZ09050.1| diguanylate cyclase/phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 354

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 118/250 (47%), Gaps = 20/250 (8%)

Query: 32  SIFFSIFIATVIFIANIFLFYI-GLTPF----------YGLEYILVENLSLVIISITISL 80
           S+   +FI ++ F ANI  F +  L P            GL  + +  L +V I+I   +
Sbjct: 104 SLLSVLFIDSIAFAANIVAFTLYSLPPVAVCLWLNGNEQGLRILYLLALPMVGIAIQHVI 163

Query: 81  LLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFF 134
              Y   +  ++ +L      ++ LS +D L+GL N     + L +     S    ++  
Sbjct: 164 QKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGLYNRRGLQNRLDTLQAPGSHEHYVLLL 223

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK  ND++GH +GD+ +  +S  +     +   V R GGEEF      +  Q+A  
Sbjct: 224 DIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTTAEPQQARA 283

Query: 195 LANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            A  +R+ + + +I      S+  ++TIS GIA    +  I   I +AD+ALY AK  GR
Sbjct: 284 TAERIRQEVYDLKIPHMFNESVATNVTISIGIAPLTDRN-IGDAIEKADKALYEAKHLGR 342

Query: 253 NRVVCFSDIE 262
           N ++   D+ 
Sbjct: 343 NHILVSDDMR 352


>gi|134298519|ref|YP_001112015.1| diguanylate cyclase [Desulfotomaculum reducens MI-1]
 gi|134051219|gb|ABO49190.1| diguanylate cyclase [Desulfotomaculum reducens MI-1]
          Length = 574

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 14/178 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +L    N++ ++S  D L+ L N       L        + N+ +S++  D+D FK +ND
Sbjct: 376 DLHEEKNKLVKISITDELTDLYNRRYLNKELLRVIDLCSTLNKNISLLMLDLDRFKAVND 435

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH  GD V+   ++ L         VGR GGEEF       S +  A++A  +R+ I 
Sbjct: 436 NYGHATGDTVLKEFAEILRRCSRGTDVVGRFGGEEFVIIIPFVSAERVALIAERIRQEIS 495

Query: 205 NSQINISSGPSIHITISAGI------AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           N   +     ++H+T+S G+            E    +I +AD+ LY AK SGRN+VV
Sbjct: 496 NFVFD-EGNSNLHVTVSIGVVTVKSLVTSTTAEVAEKLIKKADENLYQAKNSGRNKVV 552


>gi|319789587|ref|YP_004151220.1| diguanylate cyclase [Thermovibrio ammonificans HB-1]
 gi|317114089|gb|ADU96579.1| diguanylate cyclase [Thermovibrio ammonificans HB-1]
          Length = 358

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 20/190 (10%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           +   +K+L     +  + + ID L+ + N ++F       ++     N   +++  DID 
Sbjct: 173 ANQQIKKLTQELEQTKKEASIDFLTQVANRASFDRAITDMVNDFYRRNYPFALLMIDIDN 232

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND +GH  GD V+  L+  L         + R GGEEFA    G +  +A  +A  
Sbjct: 233 FKKINDTYGHQAGDYVLRELARLLKSQLRARDIIARYGGEEFAILLPGVTFSQAIRVAER 292

Query: 199 LRKIIE------NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           LRK +E      N Q+       I +TIS G+A        + ++ +AD+ALY+AK+SG+
Sbjct: 293 LRKSVEKHLFKYNDQV-------IPVTISVGVAMMRDGLDETALVEKADKALYLAKRSGK 345

Query: 253 NRVVCFSDIE 262
           N+V    D+E
Sbjct: 346 NQVKTDLDVE 355


>gi|313637199|gb|EFS02717.1| ggdef domain-containing protein [Listeria seeligeri FSL S4-171]
          Length = 319

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 114/235 (48%), Gaps = 21/235 (8%)

Query: 35  FSIFIATVI--FIANIFLF---YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
           FS FIA +I  F A ++ F   + G     G E  +VE L L   S    LL+ Y    I
Sbjct: 84  FSKFIALLILSFPAQLYYFINNFDGGHILQGFE--IVEYLFL---SFATGLLVFYACNYI 138

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQI 142
            K   +    +++ +  D L+ L N   F          S  +K  LS+   DID+FK+I
Sbjct: 139 DKSNLV-IQTLTETAMTDSLTNLPNMRFFTQQFAWIFNKSLKKKAPLSLFIIDIDHFKEI 197

Query: 143 NDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND  GH  G+ V+A  S  L    F       R+GGEEFA         +AA++A+ +R+
Sbjct: 198 NDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVDATQAALIADHIRE 257

Query: 202 IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            IE ++   +   S  +TIS G+A   C      ++   ADQALY AK+SGRN++
Sbjct: 258 EIERAKFPYTP-TSGQVTISIGVATANCSFSTTESLFEAADQALYQAKQSGRNQI 311


>gi|299771575|ref|YP_003733601.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter sp. DR1]
 gi|298701663|gb|ADI92228.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter sp. DR1]
          Length = 684

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 96/177 (54%), Gaps = 12/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +   ++ LS +D L+ L N           +S     ++K++ ++ D+D FK +ND
Sbjct: 246 ELRKANKELANLSILDNLTKLPNRLYLVDYAEVLLSDHRYKDQKIAFLYIDLDRFKSVND 305

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH VGD+++  ++++L         + R+GG+EF   A  ++  EA +LA  + ++I+
Sbjct: 306 AFGHHVGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLIAENTNADEAVVLAEKVLQLIQ 365

Query: 205 NS-QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            S QI   SG  I+I+ S G+A    H + +  ++  AD A+ ++K+ GRN    FS
Sbjct: 366 ESYQI---SGKEINISASLGVALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTIFS 419


>gi|225569376|ref|ZP_03778401.1| hypothetical protein CLOHYLEM_05460 [Clostridium hylemonae DSM
           15053]
 gi|225162175|gb|EEG74794.1| hypothetical protein CLOHYLEM_05460 [Clostridium hylemonae DSM
           15053]
          Length = 604

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 13/174 (7%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQ 141
           ISG   KE+ +    + +  R D LSGLLN  AF   +  Y ++     +   D+D FK 
Sbjct: 434 ISGEKKKEMAL----VRKAER-DNLSGLLNRGAFKEQVQEYIQQSQGGCLFLIDLDNFKD 488

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA--AILANDL 199
           IND +GH  GD+ I  + + L   F     +GR GG+EF A   G   ++      A+ +
Sbjct: 489 INDKYGHLAGDESIRKVGEVLKTCFRAKDIIGRYGGDEFFAFVPGRMTRDVIDGRAADVV 548

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            K+   + I +   P +H T S GI            + RAD+A+Y AK  G+N
Sbjct: 549 HKV---AAITLDEAPDLHFTCSVGIVRCGEGSTFKDCLKRADEAMYKAKDRGKN 599


>gi|207742852|ref|YP_002259244.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           IPO1609]
 gi|206594246|emb|CAQ61173.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           IPO1609]
          Length = 532

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 18/189 (9%)

Query: 84  YISGSILKELFISYNRIS--QLSRI------DCLSGLLNHSAFISSL---GSYNEKLSIV 132
           YI    LK   +   R+S  +++R+      D L+GL N      +L      ++  S V
Sbjct: 328 YIEAHRLKRALLRGTRLSSSRMARLNHEALTDPLTGLYNRRGVADALRLLAGRHQPFSAV 387

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK+IND  GH VGD+V+  ++  +          GR+GGEEF      ++ + A
Sbjct: 388 TLDVDHFKRINDRDGHDVGDQVLKHIAALIREQARHDDITGRIGGEEFILLLPDATPEGA 447

Query: 193 AILANDLRKIIENSQINISSGPSIH-ITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250
              A  LR+ +E         P+   +T+S G+A+     E +  ++  +D ALY AK+S
Sbjct: 448 FKTAERLRRAVE-----ARPNPTGQVVTVSLGVADYPGASEEVDAVLKLSDLALYQAKRS 502

Query: 251 GRNRVVCFS 259
           GRNR V + 
Sbjct: 503 GRNRTVLYQ 511


>gi|92112821|ref|YP_572749.1| diguanylate cyclase [Chromohalobacter salexigens DSM 3043]
 gi|91795911|gb|ABE58050.1| diguanylate cyclase [Chromohalobacter salexigens DSM 3043]
          Length = 413

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 8/190 (4%)

Query: 81  LLGYISGSILKELFISYNRISQLSRI----DCLSGLLNHSAFISSLGSYNE---KLSIVF 133
           ++G + G +L  L     R+ +  R     D L+G LN  A +S    +       ++V 
Sbjct: 194 MMGMLFGGVLMGLEGVTERLERTYRREALHDMLTGALNRRAILSIAERWRRAQCPFALVL 253

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D+FK+ ND  GH  GD  +  L + L         +GR GGEEF     G +   A 
Sbjct: 254 LDVDHFKRFNDLHGHATGDAALCHLVNCLQQGLREGDMLGRYGGEEFMLLLPGMTRGAAM 313

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +A  +  ++    + +    S+ +T+S GIA       +  +I  AD+ LY AK +GR+
Sbjct: 314 TVAERIAALVREQPLALPD-KSLGMTVSQGIAAEDEAATLGEMIELADRRLYAAKHAGRD 372

Query: 254 RVVCFSDIEN 263
           RV+ +   E 
Sbjct: 373 RVMAWDAFET 382


>gi|288960570|ref|YP_003450910.1| GGDEF domain-containing protein [Azospirillum sp. B510]
 gi|288912878|dbj|BAI74366.1| GGDEF domain-containing protein [Azospirillum sp. B510]
          Length = 379

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 83/160 (51%), Gaps = 15/160 (9%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N  AF +++         ++  +S++  DID+FK IND+ GH  GD V+  L 
Sbjct: 208 DPLTGLANRRAFFAAIDRAVAGGLRHDMPVSLLMLDIDHFKDINDSHGHDAGDAVLVALG 267

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEFA    G+    A ILA  LR  + +  I+ + G  + +T
Sbjct: 268 RLLQGGVRQSDLVARFGGEEFAILLPGAPADGAFILAERLRGAVRDLSIH-ADGAILGVT 326

Query: 220 ISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S G++    + C  +    +I  AD ALY AK+ GR+RV
Sbjct: 327 VSIGLSSLGPDLCRAD---LLIKTADMALYRAKQGGRDRV 363


>gi|262280147|ref|ZP_06057932.1| response regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262260498|gb|EEY79231.1| response regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 473

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 78/159 (49%), Gaps = 11/159 (6%)

Query: 107 DCLSGLLNHSAFISSL-----GSYNEKLSIVFF--DIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+  L    F+ S+       Y E  +  FF  D+D+FK +NDN+GH +GD+ +    
Sbjct: 312 DELTSSLTRRQFLQSVRLLQEKVYKENKTSAFFMLDVDHFKHVNDNYGHQIGDRALQTCV 371

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +  +      +GR GGEEFA     ++++ A  LA  +R  I    I I     I I 
Sbjct: 372 TTIQNILHPHDLLGRFGGEEFAIFIADTTKESAFDLAEQIRIKISQQPIYIYGKLPIFIQ 431

Query: 220 ISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S GI   +   H+  I  +   AD ALY AK+ GRNRV
Sbjct: 432 VSIGISLYSPSSHRA-IENLFKEADDALYQAKRQGRNRV 469


>gi|220923248|ref|YP_002498550.1| diguanylate cyclase [Methylobacterium nodulans ORS 2060]
 gi|219947855|gb|ACL58247.1| diguanylate cyclase [Methylobacterium nodulans ORS 2060]
          Length = 353

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 88/168 (52%), Gaps = 11/168 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D L+G+ N   F       +    +  + ++++  DID+FK+ ND +GH  G
Sbjct: 177 RVESLT--DPLTGIGNRKLFEEVLHKAVGDAVANRQSIALIVLDIDHFKRFNDVYGHLTG 234

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INI 210
           D+V+  ++  +  +  +   + R GGEEF          +A  LA  +R  +   + +  
Sbjct: 235 DRVLRLVALTMREMVDSRATIARFGGEEFGVIVPYGGRDDALDLAERIRTSVMGRELVKR 294

Query: 211 SSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           SSG S+  +T+S G+A     +   ++I RADQ ++ AK+SGRNRVV 
Sbjct: 295 SSGESLGRVTVSVGVAAYRAGDTAVSLIERADQCMFAAKRSGRNRVVV 342


>gi|107104589|ref|ZP_01368507.1| hypothetical protein PaerPA_01005668 [Pseudomonas aeruginosa PACS2]
          Length = 671

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 79/161 (49%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q +  D L+GL N +A    L     +       L +   DID+FK+IND+FGH  GDKV
Sbjct: 509 QKALTDPLTGLPNRAALSERLEQEVARRQRDGGDLLLAVLDIDHFKRINDDFGHLAGDKV 568

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++ +L        F+ R GGEEF      +S +    L   LR  I     +    P
Sbjct: 569 LKIIAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHFKGEP 628

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT SAGI      E    +  RADQALY AK++GR+R+
Sbjct: 629 -LSITCSAGITAFEGNEAGEAVFERADQALYRAKRAGRDRL 668


>gi|16759363|ref|NP_454980.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29142865|ref|NP_806207.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213161857|ref|ZP_03347567.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213427798|ref|ZP_03360548.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213852998|ref|ZP_03382530.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|25513094|pir||AH0549 adrA protein [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16501654|emb|CAD08840.1| adrA protein [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29138497|gb|AAO70067.1| adrA protein [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 370

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 25/203 (12%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
            LSL +I +   LL  ++S     +L     R+  +S  D ++G+ N   +   L +   
Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               ++ + +++  DID+FK IND +GH  GD+ I  L+ QL +       +GR GG+EF
Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDAGDEAIIALTRQLQITLRGSDIIGRFGGDEF 292

Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237
           A    G+   ++AI A  + ++ E  + + +   P + + IS G+A      P++  I  
Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343

Query: 238 YR-----ADQALYVAKKSGRNRV 255
           YR     AD ALY AK +GRNR 
Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366


>gi|297539263|ref|YP_003675032.1| PAS/PAC sensor-containing diguanylate cyclase [Methylotenera sp.
           301]
 gi|297258610|gb|ADI30455.1| diguanylate cyclase with PAS/PAC sensor [Methylotenera sp. 301]
          Length = 436

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 81/159 (50%), Gaps = 9/159 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N  AF    G   E+       LS++  D D+FK++ND FGH  GD+V+  LS
Sbjct: 268 DHLTGISNRRAFFEVAGIEFERCKKRPRPLSLLAIDADHFKKVNDTFGHATGDEVLKHLS 327

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R+GGEEF+A    +  Q A  +A  +R  I  S + + +G  I  T
Sbjct: 328 AVLQDCVREMDLVARIGGEEFSALLPSTDMQGAIKIAERIRSSIAESLLEV-NGQKIRYT 386

Query: 220 ISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G++        I  ++  AD+ALY +K  GRNRV  
Sbjct: 387 VSIGVSTVNENVTGIDMLLKIADEALYASKHGGRNRVTA 425


>gi|284990682|ref|YP_003409236.1| diguanylate cyclase [Geodermatophilus obscurus DSM 43160]
 gi|284063927|gb|ADB74865.1| diguanylate cyclase [Geodermatophilus obscurus DSM 43160]
          Length = 345

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 15/196 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQL-------SRIDCLSGLLNHS------AFISSLGSY 125
           ++ +G +  +    L +  NR+ +L       + +D L+GL+         +   S  S 
Sbjct: 150 AVFIGMVHAATAGLLVLVKNRVERLMSALERQAAVDGLTGLVTRRVLDDALSSALSASST 209

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAA 184
            E  ++V  D+D FK IND  GHPVGD  +  L+  L   V      +GRLGG+E A   
Sbjct: 210 PEGTALVLVDVDTFKNINDLHGHPVGDDALVHLAGVLRRHVRSQDAVLGRLGGDELAVLL 269

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQA 243
            G     AA  A  L   +  + + ++ G  + +++S GIA    H   + T+   AD A
Sbjct: 270 PGCWAATAAERAEHLVTAVRATPLQLADGTLLALSVSVGIAHAPQHATELRTLYAAADGA 329

Query: 244 LYVAKKSGRNRVVCFS 259
           LY AK++GR+R V  S
Sbjct: 330 LYEAKRTGRDRAVLAS 345


>gi|260855930|ref|YP_003229821.1| putative diguanylate cyclase [Escherichia coli O26:H11 str. 11368]
 gi|257754579|dbj|BAI26081.1| predicted diguanylate cyclase [Escherichia coli O26:H11 str. 11368]
          Length = 564

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLHWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            +AA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 491 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 551 KQAGRNRV 558


>gi|261419237|ref|YP_003252919.1| response regulator receiver modulated diguanylate cyclase
           [Geobacillus sp. Y412MC61]
 gi|319766053|ref|YP_004131554.1| response regulator receiver modulated diguanylate cyclase
           [Geobacillus sp. Y412MC52]
 gi|261375694|gb|ACX78437.1| response regulator receiver modulated diguanylate cyclase
           [Geobacillus sp. Y412MC61]
 gi|317110919|gb|ADU93411.1| response regulator receiver modulated diguanylate cyclase
           [Geobacillus sp. Y412MC52]
          Length = 542

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 86/186 (46%), Gaps = 16/186 (8%)

Query: 85  ISGSILKELFISYNRISQLSR-------IDCLSGLLNHS-------AFISSLGSYNEKLS 130
           I+     ELF+   R+ +  R       ID L+G+ N            S L        
Sbjct: 205 ITTPAADELFVRVRRLVEKKRKIDDLVLIDELTGVYNRKYLPQVYVRLRSELERSGTPSC 264

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +   D+D+FKQIND FGH  GD V+  L+  L         V RLGGEEF      +S+ 
Sbjct: 265 LALLDLDHFKQINDRFGHLAGDAVLQKLAAFLRQHTRGVDTVVRLGGEEFVVWLAKTSKS 324

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           EA  +   LR+      I+ + G  +  T SAG+ E C   +P+   +  AD+ALY AK+
Sbjct: 325 EARAVLERLRRQFAAETID-ADGERLSCTFSAGLVEFCDPDQPLDYWLRVADRALYAAKR 383

Query: 250 SGRNRV 255
            G NR+
Sbjct: 384 GGGNRI 389


>gi|209525726|ref|ZP_03274263.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209493895|gb|EDZ94213.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 774

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 83/166 (50%), Gaps = 16/166 (9%)

Query: 103 LSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++ ID L+G+ N        +  I   G + + L     D+D FK IND +GH  GD V+
Sbjct: 612 IAEIDTLTGIENRYKSTEDINRLIRIAGRHKQPLCFAILDLDNFKDINDQYGHDTGDWVL 671

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
               + L   F     VGR GGEEFA A  G+ +Q+A      L+K++E  ++ +   P 
Sbjct: 672 HRFGEVLKKAFRQEDIVGRWGGEEFAVAMYGTYKQDA---MKRLQKVLEEWRLEVLV-PE 727

Query: 216 IHI----TISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
            HI    T S G+A+         ++YR AD  L  AK+ GRN+++
Sbjct: 728 DHIAFSVTFSGGVAQYPEDGHDLQLLYRVADANLDQAKQGGRNQII 773


>gi|73543082|ref|YP_297602.1| GGDEF [Ralstonia eutropha JMP134]
 gi|72120495|gb|AAZ62758.1| GGDEF [Ralstonia eutropha JMP134]
          Length = 584

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 93/199 (46%), Gaps = 26/199 (13%)

Query: 84  YISGSILKELFISY----NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIV 132
           +I+  ++ +LF  Y     ++ +++R D L+GL N         S  E+       L++V
Sbjct: 373 WITLKVVTQLFDHYIALGEKLQEIARQDPLTGLANRRRMRELAQSEFERQKRDGQPLALV 432

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK++ND++GH  GDKV+  L+  +           RLGGEEFA     +S  EA
Sbjct: 433 MIDIDFFKKVNDHWGHASGDKVLVELARTMRANLRNVDQPARLGGEEFAVLMPNTSLAEA 492

Query: 193 AILANDLRKIIENSQINIS-------SGPSIHITISAGIAERCHKEPISTIIYR------ 239
           A  A  LR+ I    +          +   I  TIS G+AE    E    +         
Sbjct: 493 AQSAERLRRAIAACVVEADLEACVERADRIIRFTISVGVAE-ARGEAADGVPMTLDGLAA 551

Query: 240 -ADQALYVAKKSGRNRVVC 257
            AD+ LY AK  GRNRVV 
Sbjct: 552 IADRRLYDAKTQGRNRVVS 570


>gi|310657329|ref|YP_003935050.1| hypothetical protein CLOST_0013 [Clostridium sticklandii DSM 519]
 gi|308824107|emb|CBH20145.1| exported protein of unknown function [Clostridium sticklandii]
          Length = 525

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 80/152 (52%), Gaps = 5/152 (3%)

Query: 107 DCLSGLLNHSAFISSLG-SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           D ++GL N +  IS    + +  +++   DID FK IND +GH +GD VI  +S  +  V
Sbjct: 376 DNMTGLFNRAEIISIYEINMDRDIALGVIDIDDFKNINDTYGHAIGDIVIKDISSIIQNV 435

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
            G   +VGR GGEEF      S + ++  L  ++R  IEN +      P   IT+S G+ 
Sbjct: 436 VGDKGYVGRYGGEEFLVILNKSDQYDSKKLLEEIRISIENKKWFFKDSP---ITVSIGLL 492

Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                   +     AD+ LY+AK++G+N ++C
Sbjct: 493 NEAKNTSFNNGFKVADELLYLAKRNGKN-IIC 523


>gi|238752626|ref|ZP_04614098.1| Predicted diguanylate cyclase [Yersinia rohdei ATCC 43380]
 gi|238709140|gb|EEQ01386.1| Predicted diguanylate cyclase [Yersinia rohdei ATCC 43380]
          Length = 361

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 94/185 (50%), Gaps = 7/185 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQ 141
           +  ++  L+    + S LS ID L+GL N   F + L +   +      ++  DID+FK 
Sbjct: 172 TRKLVAHLYNEREKFSDLSMIDPLTGLYNRRGFENKLETLLAQSPGNHYVLLLDIDHFKA 231

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            NDN+GH +GD+ +  ++  +     +   V R GGEEF       SE+ A  LA  +R+
Sbjct: 232 YNDNYGHTMGDQALVRVAVAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYATQLAERVRQ 291

Query: 202 IIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +  I    +   S  +T+SAG++       +++ +  AD+ALY AKK GRN+V    
Sbjct: 292 RVLSLDIPHVFNHKVSTSVTLSAGVSP-LQSYDLTSSLKAADEALYRAKKDGRNKVAFAE 350

Query: 260 DIENN 264
           + + N
Sbjct: 351 EKQPN 355


>gi|146294393|ref|YP_001184817.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
 gi|145566083|gb|ABP77018.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
          Length = 324

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 85/170 (50%), Gaps = 9/170 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +L  +  ++ +LS+ D L+ L N   +   L         YN+  S+V  DID FK IND
Sbjct: 144 QLKAANEQLERLSQTDGLTQLHNRRHWQLCLEHEFDLYARYNDIASLVMIDIDNFKYIND 203

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GDKVI  ++  L          GR GGEEFA     +S ++A      LR+ I 
Sbjct: 204 TYGHVAGDKVIQHIAHILSQSLRETDCAGRYGGEEFAVVMPKTSGEDALHFTERLREKIA 263

Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
            S I +     I +T+S G+ E   H    S+ I  +D+ALY AK+ GRN
Sbjct: 264 ESTI-VYESLKIKVTVSLGVCEIGKHISSSSSWISCSDKALYEAKQKGRN 312


>gi|229061718|ref|ZP_04199052.1| Sensory box/GGDEF family protein [Bacillus cereus AH603]
 gi|228717567|gb|EEL69229.1| Sensory box/GGDEF family protein [Bacillus cereus AH603]
          Length = 430

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 82/169 (48%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ ID L+ + N   F   L          +EK++++ FDID FK +ND +GH 
Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILELEWDNAVRNDEKIALILFDIDNFKSVNDTYGHD 320

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L+D +           R GGEEF      + E+EA  +A  LR  IE     
Sbjct: 321 FGDLALVQLADLMKSKVEDQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKHF- 379

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             SG S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 380 --SGIS-KLTASFGVALYEQGITREELMQRADIALYEAKKNGKNQVCIY 425


>gi|39996055|ref|NP_952006.1| GGDEF domain-containing protein [Geobacter sulfurreducens PCA]
 gi|39982820|gb|AAR34279.1| GGDEF domain protein [Geobacter sulfurreducens PCA]
 gi|307634775|gb|ADI83801.2| diguanylate cylase [Geobacter sulfurreducens KN400]
          Length = 430

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 18/177 (10%)

Query: 101 SQLSRI---DCLSGLLN-----HSA---FISSLGSYNEK-----LSIVFFDIDYFKQIND 144
           ++L RI   D L+G+ N     H A   F   +    ++     L I+  D+D+FKQIND
Sbjct: 238 AELKRIAVTDPLTGIANRRQIIHRATEEFARQMRRKQQRTAVPSLGIIMADVDHFKQIND 297

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD V+  ++ ++  V      VGR GGEEF      +  +E   +A  +R+ + 
Sbjct: 298 TYGHSAGDDVLREIASRIGSVLRQYDAVGRYGGEEFLVILSETELEETWHIAERIRRRVA 357

Query: 205 NSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  + +     I ++ S GIA     E      + RAD+ LY+AK +GRNRV+C  D
Sbjct: 358 DDPV-VVDNQVIRVSASLGIATVLAGEADYRPALERADKGLYLAKTAGRNRVMCAGD 413


>gi|260462930|ref|ZP_05811134.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum
           WSM2075]
 gi|259031324|gb|EEW32596.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum
           WSM2075]
          Length = 737

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 93/186 (50%), Gaps = 17/186 (9%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           +L  S +RI QL+  D L+ L N   F       +S L S  E+L++++ D+D FKQ+ND
Sbjct: 298 KLIESEDRIFQLAHNDLLTALPNRGQFNDRLADALSRLPSTGEQLAVLYLDLDRFKQVND 357

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL---- 199
            FGHP GD+++   +D+L  +      V RLGG+EF       + E E   L   L    
Sbjct: 358 TFGHPAGDELLREFADRLRRLTTEADTVARLGGDEFIIIKRSVAGEDEVRTLCEHLLESA 417

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           R+  + +   +  G    +++ A  A R   E +  ++ +AD ALY AK  GR+    F+
Sbjct: 418 RRPFQVAGAQVFVG----VSVGAAFAPRDGLEWVE-LVRKADVALYHAKARGRSSYAFFA 472

Query: 260 DIENNT 265
              + T
Sbjct: 473 TEMDQT 478


>gi|261406493|ref|YP_003242734.1| PAS/PAC sensor-containing diguanylate cyclase [Paenibacillus sp.
           Y412MC10]
 gi|261282956|gb|ACX64927.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus sp.
           Y412MC10]
          Length = 539

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 87/188 (46%), Gaps = 29/188 (15%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHPV 150
           + Q++  D L+ + N S F+    SY          E L+ + FDID+FK+IND +GH +
Sbjct: 356 LRQMAYYDGLTRIYNRSHFMKL--SYALLNQAVRNREPLAFLLFDIDHFKRINDVYGHDI 413

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+ +  + +             R GGEEFA A  G S  EA   A  +R  +    +  
Sbjct: 414 GDQALQHIVELTRKTLRAEDLFARYGGEEFAVAMPGQSTSEATAAAERIRAKLLAQPMTT 473

Query: 211 SSGPSIHITISAGIA----------------ERCHKEPISTIIYRADQALYVAKKSGRNR 254
             G S+ IT S G+A                E      +  ++ +AD+ALY AK+SGRN 
Sbjct: 474 PQG-SLMITASFGVAAVKTSSHNGTVDAEAEEAWWDTELKKVLKQADRALYEAKRSGRN- 531

Query: 255 VVCFSDIE 262
            +  SD E
Sbjct: 532 TIRVSDEE 539


>gi|172063524|ref|YP_001811175.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
 gi|171996041|gb|ACB66959.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
          Length = 492

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 14/193 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128
           I +S++LG    + L+    + + +  L+R D L+GL N  +F   L     +       
Sbjct: 300 IAVSVMLG----TQLRRRMRAESELVLLARTDGLTGLNNRRSFGEVLDREWRRARRSRSV 355

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187
            S++F D+D FK  ND +GH  GD  +A ++  +      P     R GGEEF      +
Sbjct: 356 FSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTAARYGGEEFVVLLPDT 415

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALY 245
            E  AA +A  +R  I+   +  +     H+T S G+A     + +   ++I  AD+ALY
Sbjct: 416 PETGAAQIAERIRAAIDELALEHAGSEHGHVTASIGLASWTPDDDVEAGSVIKAADEALY 475

Query: 246 VAKKSGRNRVVCF 258
            AK +GRN+V  F
Sbjct: 476 YAKATGRNKVAAF 488


>gi|116327587|ref|YP_797307.1| GGDEF domain-containing protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331802|ref|YP_801520.1| GGDEF domain-containing protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120331|gb|ABJ78374.1| GGDEF domain protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125491|gb|ABJ76762.1| GGDEF domain protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 323

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 93/204 (45%), Gaps = 26/204 (12%)

Query: 84  YISGSILKELFISYNRISQLSR--------------IDCLSGLLNHSAFISSLG------ 123
           Y++G  + E+  S  +ISQL+                D L+ L N  AF   L       
Sbjct: 108 YVTGKDISEMIESNRKISQLAAELKVANDKLFEQACTDPLTKLKNRRAFNEDLNRLIHLA 167

Query: 124 -SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
            +    LS++  D+D+FK  NDNFGHP GDKV+  ++  L         + R GGEEF  
Sbjct: 168 QNQGTSLSLLMIDVDFFKDYNDNFGHPAGDKVLIEIALLLTRALRKCDVLARYGGEEFII 227

Query: 183 AALGSSEQEAAILANDLRKII-----ENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           A   +S+ ++  +   L + I     E   I IS G S       G     +   ++ +I
Sbjct: 228 ALPDASQTDSVEITERLIQTIREFSWEKRPITISIGISTLTFPLGGTLPIENNACLTNLI 287

Query: 238 YRADQALYVAKKSGRNRVVCFSDI 261
             AD+ALY +K  GR+R   F++I
Sbjct: 288 ESADRALYASKTEGRDRFTHFTEI 311


>gi|291279366|ref|YP_003496201.1| signal transduction response regulator [Deferribacter desulfuricans
           SSM1]
 gi|290754068|dbj|BAI80445.1| signal transduction response regulator [Deferribacter desulfuricans
           SSM1]
          Length = 427

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 10/161 (6%)

Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+ ID L+ L N   F             Y    SI+  DID FK IND +GH +GD V+
Sbjct: 268 LATIDDLTQLYNRRFFWELARKEENRYIRYKRDYSIIILDIDDFKMINDTYGHDIGDTVL 327

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +S  +         + R GGEEF      + +  A  +A  +R+ I + Q    +   
Sbjct: 328 KEISKSVRSNIRKSDILARFGGEEFIILLPETEKNGAKAVAEKIRQSINDKQF---THFK 384

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +HIT+S G++ R     +   I  AD  LY AK SG+N+VV
Sbjct: 385 LHITVSLGVSSRTEANDLEETIKIADNRLYKAKNSGKNKVV 425


>gi|89900099|ref|YP_522570.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
 gi|89344836|gb|ABD69039.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
          Length = 256

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 9/167 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +++ +LS  D L+GL N   F       I ++    E   ++  DID+FK++ND +GH  
Sbjct: 40  DQLCELSLKDPLTGLANRRHFRHVLGREIDAVARSGESALLLMMDIDHFKKVNDTYGHLA 99

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  ++  L         V R GGEEF A           I+A  +R  + + Q+ +
Sbjct: 100 GDRVLQAVAKALASCLRPMDTVARYGGEEFTAILPNCPPSFGKIVAERIRATVGSLQVLV 159

Query: 211 SSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   S+ +TIS G   A    +   +  I RAD  LY AK  GRNRV
Sbjct: 160 APLVSLQVTISIGGAFAPEWVRSTTALWIDRADTQLYRAKSEGRNRV 206


>gi|15601692|ref|NP_233323.1| sensory box/GGDEF family protein [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|153821053|ref|ZP_01973720.1| sensory box/GGDEF family protein [Vibrio cholerae B33]
 gi|229510225|ref|ZP_04399705.1| sensory box/GGDEF family protein [Vibrio cholerae B33]
 gi|229517645|ref|ZP_04407090.1| sensory box/GGDEF family protein [Vibrio cholerae RC9]
 gi|229605453|ref|YP_002876157.1| sensory box/GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254850103|ref|ZP_05239453.1| sensory box/GGDEF family protein [Vibrio cholerae MO10]
 gi|9658376|gb|AAF96835.1| sensory box/GGDEF family protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|126521427|gb|EAZ78650.1| sensory box/GGDEF family protein [Vibrio cholerae B33]
 gi|229345681|gb|EEO10654.1| sensory box/GGDEF family protein [Vibrio cholerae RC9]
 gi|229352670|gb|EEO17610.1| sensory box/GGDEF family protein [Vibrio cholerae B33]
 gi|229371939|gb|ACQ62361.1| sensory box/GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254845808|gb|EET24222.1| sensory box/GGDEF family protein [Vibrio cholerae MO10]
          Length = 321

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 19/172 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ QL+  D L+ L N            +      + LS +  DID FK IND FGH  G
Sbjct: 152 QLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKG 211

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+ FL+     V     F GR+GGEEF      +  + A  LA  +R+         +
Sbjct: 212 DEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIRQ-------RFA 264

Query: 212 SGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
             P    + HI + AG++   H +  I+ I  R+DQALY AK++GRNR   +
Sbjct: 265 EHPFFEQNEHIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 316


>gi|148548425|ref|YP_001268527.1| diguanylate cyclase [Pseudomonas putida F1]
 gi|148512483|gb|ABQ79343.1| diguanylate cyclase with GAF sensor [Pseudomonas putida F1]
          Length = 345

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 87/189 (46%), Gaps = 12/189 (6%)

Query: 79  SLLLGYIS----GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEK-- 128
           +L  GY+       + + L +  +R  + + +D L+ L N  A  +     L    E+  
Sbjct: 152 TLTEGYLQLRSLAQVNRALRVEMDRGQRRALLDPLTQLWNRGALAAFQNRELRLAEERGL 211

Query: 129 -LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            L  V+ D+D FK +ND  GH  GDKV+   + +L         + R GGEEF A     
Sbjct: 212 QLGAVYADLDRFKSVNDEHGHDAGDKVLCECARRLRATLRPDDLLVRQGGEEFVALLRVK 271

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
             QE   +A  LR+ I ++   +  GP   +T+S G       E I   I RAD  LY A
Sbjct: 272 DSQELTQIAERLRQSIGSTPFLMPGGPR-KMTMSIGCTLLTQGEQIDDAIKRADGGLYAA 330

Query: 248 KKSGRNRVV 256
           K  GR++VV
Sbjct: 331 KHGGRDQVV 339


>gi|294828213|ref|NP_713106.2| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
 gi|293386063|gb|AAN50124.2| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
          Length = 313

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 90/186 (48%), Gaps = 21/186 (11%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEK---LSIVFFDIDYFKQIND 144
           EL  + +++ + +  D L+ L N   F   L       N+K   LS++  D+D+FK  ND
Sbjct: 131 ELKDANDKLFEQASTDPLTKLKNRRTFNEELKDLIVHTNKKRGFLSLLMIDVDHFKTYND 190

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGHP GD+V+  L+  L         + R GGEEF  A   + E +A  +A+ L   I+
Sbjct: 191 QFGHPAGDQVLIRLASVLTYALRVSDLLARFGGEEFVVALPETGEYKAIEVADRLVVTIQ 250

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIST---------IIYRADQALYVAKKSGRNRV 255
                  +  +  ITIS GIA      P+ST         I+  AD+ALY +K +GRN+ 
Sbjct: 251 K-----ETWENRPITISVGIATLDFSLPVSTFRDTDFSTRIVEEADRALYRSKANGRNQA 305

Query: 256 VCFSDI 261
              S I
Sbjct: 306 THCSQI 311


>gi|158520662|ref|YP_001528532.1| serine/threonine protein kinase [Desulfococcus oleovorans Hxd3]
 gi|158509488|gb|ABW66455.1| serine/threonine protein kinase [Desulfococcus oleovorans Hxd3]
          Length = 1644

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 8/164 (4%)

Query: 100  ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
            +S+ +  D L+GL NH  F + L            +LS++  DID+FK+ ND +GH  GD
Sbjct: 1477 LSRKAVTDGLTGLYNHDYFQNMLQQELLLAKRKGRELSMIMIDIDHFKRFNDTWGHQAGD 1536

Query: 153  KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             V+  ++ ++     +   V R GGEE A     +  + A  LA  +R+ +E  ++  + 
Sbjct: 1537 MVLREVAAEIRESCRSSDVVARYGGEEMALLLHETGPEAAFALAEKIRRRVEALRVEHAP 1596

Query: 213  GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G  + +TIS G+A    H +    ++ +AD ALY +K  GRN V
Sbjct: 1597 GEYLQVTISLGVAGFPIHAKNKKPLVKKADDALYSSKAGGRNMV 1640


>gi|117926223|ref|YP_866840.1| response regulator receiver modulated diguanylate cyclase
           [Magnetococcus sp. MC-1]
 gi|117609979|gb|ABK45434.1| response regulator receiver modulated diguanylate cyclase
           [Magnetococcus sp. MC-1]
          Length = 438

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 14/174 (8%)

Query: 92  ELFISYNRISQLSRI---DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           +L++   +I+ L +    D L+G  N S         +     Y   +SI+  DID+FK+
Sbjct: 258 DLYLIQRKINDLEKKVYHDPLTGAANRSRLYEKFHEEMKRSERYGSPVSILMLDIDHFKR 317

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH  GD+V+  +  ++         VGR GGEEF   A  +    A  +A ++R+
Sbjct: 318 VNDTYGHNAGDEVLLEVVKRMQGHVRVTDLVGRWGGEEFLLIAPETVLGAALEVAENIRR 377

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +I      I  G    +T S G+ +    E ++T + R D ALY AKK GR+RV
Sbjct: 378 LIG----QIPFGQVGRVTCSIGVGQLAKGESMNTCLERVDAALYRAKKQGRDRV 427


>gi|302059667|ref|ZP_07251208.1| GGDEF [Pseudomonas syringae pv. tomato K40]
          Length = 512

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 114/242 (47%), Gaps = 30/242 (12%)

Query: 34  FFSIFIATVIF---IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
            FSIF+  V++   + ++ ++ + L   Y  ++   E    V+ S   +LL   +   +L
Sbjct: 1   MFSIFLLAVVWEFKLESLAMYAMDLP--YDPDFEDAERWRFVLTSTAFALLSMVVPFILL 58

Query: 91  KELFI----SYNRI-------SQLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFD 135
           K L      SYN +         L+R D LSGLLN    H   ++ L   + + ++   D
Sbjct: 59  KRLMQRLQSSYNDLLVAQALSDSLARHDPLSGLLNRRVFHEQLVARLQQESTRTAVFLID 118

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ-EAA 193
           +D FK IND  GH VGD  I  +++ L     G    V RLGG+EF  A  G   Q E A
Sbjct: 119 LDKFKLINDTHGHAVGDAAICAVAESLRDATAGWQASVARLGGDEFGLAVSGDFNQFELA 178

Query: 194 ILANDLRKIIENSQINISSG--PSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKS 250
            LA ++      ++I +SS   P + ++ + G+A           ++ RAD A+Y  K S
Sbjct: 179 TLAENVL-----AKIALSSAVLPRVILSATLGVAISPLDGSDAEVLLQRADSAMYRGKHS 233

Query: 251 GR 252
           GR
Sbjct: 234 GR 235


>gi|262404002|ref|ZP_06080557.1| GGDEF family protein [Vibrio sp. RC586]
 gi|262349034|gb|EEY98172.1| GGDEF family protein [Vibrio sp. RC586]
          Length = 358

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 124/253 (49%), Gaps = 19/253 (7%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE 67
           +L + L   KN +   P   ++  ++  ++ +  V++I  +    + L   +    I+V+
Sbjct: 114 YLGVALIAAKNGQRGRPEQTLL--AVVLAMMM-VVLYIPLVAYQTLPLMAVFRAATIVVQ 170

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGS 124
           NL   II  T+ +L       + +E  I ++R+  +   D L+G  N   F   +    +
Sbjct: 171 NLFFFIILGTMLMLF------LFEE--IEWHRLRSIR--DELTGSFNRRYFKELVQRQLN 220

Query: 125 YNEKLSIV-FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            +E  SI+   DID+FKQIND +GH +GD+VI F+   L  +      V R GGEEFA  
Sbjct: 221 QSEAASIIALVDIDHFKQINDTYGHDIGDEVITFVVQNLESLNLMDCVVARYGGEEFAIF 280

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
           A  + E   A   + +R  I     +I   P + +++S G+           ++ +AD+A
Sbjct: 281 ARENDEARVAKALDTVRDEIACG-FSIDDQP-LRVSVSIGVVMLDTSYDYGEVLRQADKA 338

Query: 244 LYVAKKSGRNRVV 256
           LY AK+ GRNRV+
Sbjct: 339 LYQAKQQGRNRVM 351


>gi|257061570|ref|YP_003139458.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8802]
 gi|256591736|gb|ACV02623.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8802]
          Length = 660

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 101/208 (48%), Gaps = 19/208 (9%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY- 125
           E +SL + S+   L +      +L++L  +  +++ L+ +D L+ + N   F   L    
Sbjct: 453 EEMSL-LESVAAQLGIAIAHSHLLEQLKEANEKLAALANLDGLTQVANRRHFDEILAQRW 511

Query: 126 ------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGE 178
                  + LS++  D+DYFK+ ND +GH +GD+ +  ++  +      P   V R GGE
Sbjct: 512 KQCAREKQPLSLIMCDVDYFKRYNDLYGHQMGDECLIKVAQTIAKTVQRPGDLVARWGGE 571

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIA---------ERC 228
           EFA     +       +A  +R+ +++  I     P    ++IS GIA         E  
Sbjct: 572 EFAVILPNTDVNGVKYIAQSIREQVQSLAIIHEDSPIKNQVSISLGIATIIPPAKTLENN 631

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256
           H+  I  +I +ADQALY AK+ GR+R+ 
Sbjct: 632 HESLIKALIAQADQALYQAKEQGRDRIA 659


>gi|160878694|ref|YP_001557662.1| diguanylate cyclase [Clostridium phytofermentans ISDg]
 gi|160427360|gb|ABX40923.1| diguanylate cyclase [Clostridium phytofermentans ISDg]
          Length = 604

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 93/169 (55%), Gaps = 19/169 (11%)

Query: 107 DCLSGLLNHSAFISSLGSYN------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GLLN  A I+ L          +K   +  D+D FK IND++GH VGD+ I  +++
Sbjct: 259 DALTGLLNKRA-ITQLAEQKIQYTGKDKFRFLILDVDNFKTINDSYGHMVGDEAIVRVAN 317

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHIT 219
            +  + G    VGR+GG+E   A L + + E + L N L+ I EN +   + S  +IHIT
Sbjct: 318 IVKKMVGDHGVVGRIGGDEL-FAILDNVDDEKS-LRNVLKAIRENVAYAYVGSENNIHIT 375

Query: 220 ISAGIAERCHKEPISTIIY-----RADQALYVAKKSGRNRVVCFSDIEN 263
            S G AE     P   + Y     +AD +LY+AK+ G+NR + ++ +++
Sbjct: 376 CSMGCAEY----PTDGVSYKELFQKADYSLYLAKEKGKNRYIIYNPLKH 420


>gi|296156788|ref|ZP_06839626.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. Ch1-1]
 gi|295893387|gb|EFG73167.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. Ch1-1]
          Length = 667

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 11/182 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYF 139
           SG+ + E  ++  R+++L+  D L+GL N +A    +       +  E + ++F D+D F
Sbjct: 220 SGTDITEERLAQERLTELANTDSLTGLANRNAIQDRIRAAIEDAAPGEAVGVLFLDLDNF 279

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND++GH  GD++I  +S  + +       + RLGG+EF   A   +  E  + A   
Sbjct: 280 KKVNDHYGHVFGDRLIRDVSAAISLCLNEGDTLARLGGDEFIVLAAKGTAHELEVTA--- 336

Query: 200 RKIIENSQINISSG-PSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++I+E  +   S G   ++   S GIA    H + + ++I  AD A+YVAK  G+     
Sbjct: 337 QRILERMRTPFSLGLVEVYTGCSIGIALYPEHGDSLESLIRSADTAMYVAKDEGKRTHRV 396

Query: 258 FS 259
           FS
Sbjct: 397 FS 398


>gi|295098029|emb|CBK87119.1| diguanylate cyclase (GGDEF) domain [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 459

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 11/174 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYF 139
           ++L+ELF   +R      +D L+ LLN   F+ ++             KLS +  D+D F
Sbjct: 281 TLLRELFDEVSR--HEVGVDVLTRLLNRR-FLPTIFKREILHATRAGTKLSTLLIDVDKF 337

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQIND +GH  GD+++  +S        T  +V R GG+EF       SE +A  +A  +
Sbjct: 338 KQINDTWGHNTGDEILRKVSGAFYDNVRTCDYVFRYGGDEFLIVLTEISEVDALRIAERI 397

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           R+ +E  ++N  +G  I +++S G+A          +I  AD+ALY AK+ GRN
Sbjct: 398 RRRVEKIKVNSPTGDIIPLSLSIGVAMFNGHPDYERLIQAADEALYGAKRRGRN 451


>gi|147671427|ref|YP_001215475.1| sensory box/GGDEF family protein [Vibrio cholerae O395]
 gi|146313810|gb|ABQ18350.1| sensory box/GGDEF family protein [Vibrio cholerae O395]
 gi|227015240|gb|ACP11449.1| sensory box/GGDEF family protein [Vibrio cholerae O395]
          Length = 642

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 18/174 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS--IVFFDIDYFKQINDNFGH 148
           NR+ +LS  D L+ L N   F  ++         Y ++    +   DID+FK+IND FGH
Sbjct: 473 NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGH 532

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+  ++  +        F+ R+GGEEFA     +S +EA  + N +R       +
Sbjct: 533 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVR-------L 585

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +I+S     +T+S G+ + C     S    RAD ALY +K SGRN++   + +E
Sbjct: 586 HIASLHHQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTAME 637


>gi|86357960|ref|YP_469852.1| hypothetical protein RHE_CH02345 [Rhizobium etli CFN 42]
 gi|86282062|gb|ABC91125.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 417

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 89/187 (47%), Gaps = 12/187 (6%)

Query: 89  ILKELF-ISYNRIS--QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           IL+EL   + +R+   Q +  D L+  +   AF       I+    +   LS + FDID+
Sbjct: 154 ILEELAGAAMDRLELMQSAATDSLTEAMTRRAFKQEAEQLIALALRHQHDLSCIVFDIDH 213

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND  GH  GD V+  ++             GR+GGEEFA          A  +A  
Sbjct: 214 FKQVNDRHGHAAGDAVLKAVASACKATLRAGDLFGRIGGEEFAVVLPHVDRDGAVAVAEK 273

Query: 199 LRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +R  I +  +    G  +H+T S G  A     + I T++ +AD A+Y AK  GRNR V 
Sbjct: 274 IRAAIASQPVRSDHG-VLHVTASLGSSALSIVSKEIETLLAQADAAMYQAKNGGRNRCVS 332

Query: 258 FSDIENN 264
           +S I  +
Sbjct: 333 WSSIHAD 339


>gi|15600680|ref|NP_254174.1| hypothetical protein PA5487 [Pseudomonas aeruginosa PAO1]
 gi|218894590|ref|YP_002443460.1| putative GGDEF domain protein [Pseudomonas aeruginosa LESB58]
 gi|9951821|gb|AAG08872.1|AE004961_7 hypothetical protein PA5487 [Pseudomonas aeruginosa PAO1]
 gi|218774819|emb|CAW30637.1| putative GGDEF domain protein [Pseudomonas aeruginosa LESB58]
          Length = 671

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 79/161 (49%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q +  D L+GL N +A    L     +       L +   DID+FK+IND+FGH  GDKV
Sbjct: 509 QKALTDPLTGLPNRAALSERLEQEVARRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDKV 568

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++ +L        F+ R GGEEF      +S +    L   LR  I     +    P
Sbjct: 569 LKIIAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHFKGEP 628

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT SAGI      E    +  RADQALY AK++GR+R+
Sbjct: 629 -LSITCSAGITAFEGNEAGEAVFERADQALYRAKRAGRDRL 668


>gi|15601453|ref|NP_233084.1| sensory box/GGDEF family protein [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121725922|ref|ZP_01679222.1| sensory box/GGDEF family protein [Vibrio cholerae V52]
 gi|153818589|ref|ZP_01971256.1| sensory box/GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|153820677|ref|ZP_01973344.1| sensory box/GGDEF family protein [Vibrio cholerae B33]
 gi|227812264|ref|YP_002812274.1| sensory box/GGDEF family protein [Vibrio cholerae M66-2]
 gi|229506142|ref|ZP_04395651.1| sensory box/GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229510000|ref|ZP_04399480.1| sensory box/GGDEF family protein [Vibrio cholerae B33]
 gi|229516439|ref|ZP_04405886.1| sensory box/GGDEF family protein [Vibrio cholerae RC9]
 gi|229605674|ref|YP_002876378.1| sensory box/GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254285719|ref|ZP_04960682.1| sensory box/GGDEF family protein [Vibrio cholerae AM-19226]
 gi|297580277|ref|ZP_06942204.1| sensory box/GGDEF family protein [Vibrio cholerae RC385]
 gi|298499497|ref|ZP_07009303.1| sensory box/GGDEF family protein [Vibrio cholerae MAK 757]
 gi|9658115|gb|AAF96596.1| sensory box/GGDEF family protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121631687|gb|EAX64055.1| sensory box/GGDEF family protein [Vibrio cholerae V52]
 gi|126510872|gb|EAZ73466.1| sensory box/GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|126521720|gb|EAZ78943.1| sensory box/GGDEF family protein [Vibrio cholerae B33]
 gi|150424216|gb|EDN16154.1| sensory box/GGDEF family protein [Vibrio cholerae AM-19226]
 gi|227011406|gb|ACP07617.1| sensory box/GGDEF family protein [Vibrio cholerae M66-2]
 gi|229346320|gb|EEO11291.1| sensory box/GGDEF family protein [Vibrio cholerae RC9]
 gi|229352445|gb|EEO17385.1| sensory box/GGDEF family protein [Vibrio cholerae B33]
 gi|229356493|gb|EEO21411.1| sensory box/GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229372160|gb|ACQ62582.1| sensory box/GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|297535923|gb|EFH74757.1| sensory box/GGDEF family protein [Vibrio cholerae RC385]
 gi|297541478|gb|EFH77529.1| sensory box/GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 642

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 18/174 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS--IVFFDIDYFKQINDNFGH 148
           NR+ +LS  D L+ L N   F  ++         Y ++    +   DID+FK+IND FGH
Sbjct: 473 NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGH 532

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+  ++  +        F+ R+GGEEFA     +S +EA  + N +R       +
Sbjct: 533 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVR-------L 585

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +I+S     +T+S G+ + C     S    RAD ALY +K SGRN++   + +E
Sbjct: 586 HIASLHHQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTAME 637


>gi|323498705|ref|ZP_08103694.1| hypothetical protein VISI1226_02537 [Vibrio sinaloensis DSM 21326]
 gi|323316221|gb|EGA69243.1| hypothetical protein VISI1226_02537 [Vibrio sinaloensis DSM 21326]
          Length = 626

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 87/170 (51%), Gaps = 20/170 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHP 149
            R+  LS  D L+ L N   F   L SY        N+   +   DIDYFK++ND  GH 
Sbjct: 460 ERLRTLSEKDELTQLWNRRKFELELRSYAKLQERYPNQSTCLALLDIDYFKRVNDQLGHD 519

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+VI  + + L        FV R+GGEEFA     +S  +A +    L++I+  +++ 
Sbjct: 520 EGDRVITRIGEILQQTLRDTDFVARIGGEEFAVILPHTSIAKAELA---LQRILVAAEL- 575

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VC 257
                 + +T+SAG+ +       ST  Y+ AD ALY +K +GRNRV +C
Sbjct: 576 ---ASDLSVTLSAGVTDLLAD---STRSYKCADIALYESKTAGRNRVSIC 619


>gi|304310742|ref|YP_003810340.1| hypothetical protein HDN1F_11000 [gamma proteobacterium HdN1]
 gi|301796475|emb|CBL44683.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 433

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 15/168 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + + SR D L+G+ N  +F  +          +N  LS + FDID+FKQIND +GH  GD
Sbjct: 257 LERQSRTDHLTGVGNRRSFYENAQREFARSRRHNTLLSFITFDIDHFKQINDIYGHSAGD 316

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  L+D  +        + R GGEEF      +    A  LA  +R +++ + +    
Sbjct: 317 EVLHGLADVCLAALRREDTLVRTGGEEFGVLLPDTDIVSAFALAERIRVLVKQALL---- 372

Query: 213 GPS---IHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
           GP    + +++S G+A    ++    T+  RAD+ALY AK+ GR+R V
Sbjct: 373 GPKDSGLQVSVSLGVAMLSQEDTSFDTLYLRADRALYEAKRGGRDRSV 420


>gi|288549606|ref|ZP_05967561.2| putative GGDEF domain protein [Enterobacter cancerogenus ATCC
           35316]
 gi|288318532|gb|EFC57470.1| putative GGDEF domain protein [Enterobacter cancerogenus ATCC
           35316]
          Length = 349

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+  L+ +D L+   N  A  + L    E+    S++  D+D+FK+ ND +GH  GD  +
Sbjct: 186 RLDALAHLDALTQTANRRAMETLLEDATERKKAFSLIMLDVDFFKRYNDTYGHQAGDVCL 245

Query: 156 AFLSDQLVVVFGTPM-FVGRLGGEEFAA----AALGSSEQEAAILANDLRKI-IENSQIN 209
             ++  L     TP   V R GGEEF        L  +EQ A  +   LR   I +S  N
Sbjct: 246 TSVAQVLKQSVRTPNDVVSRYGGEEFVVILFDCPLRGAEQVALRIQEKLRAAAIPHSASN 305

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            S     ++T+S GIAE       + ++ RAD ALY AK++GR+R
Sbjct: 306 ASE----YVTVSMGIAEMAEGLAGTELLARADAALYRAKEAGRDR 346


>gi|150377434|ref|YP_001314029.1| diguanylate cyclase [Sinorhizobium medicae WSM419]
 gi|150031981|gb|ABR64096.1| diguanylate cyclase [Sinorhizobium medicae WSM419]
          Length = 422

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 125/267 (46%), Gaps = 27/267 (10%)

Query: 18  NLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY--------------GLEY 63
           N+  F   T +I FSI  +  +A   F   ++L +    P                G+  
Sbjct: 154 NIMLFVAITAIIIFSIPLAWTVAVASFALALYLIFQLRNPMLDTGSAVAGTLFFTSGIVA 213

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL- 122
            +V   ++ I++   + LL       + EL  +  R+ +L++ D L+G+ N    + +L 
Sbjct: 214 TVVARRTMTILA-QKTFLLELRDKRRVAELADANARLERLAKTDPLTGIANRRWMMETLN 272

Query: 123 ---GSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRL 175
              G+  E+    +++  DID FK +ND  GH  GD+ +  ++  +   V      V R 
Sbjct: 273 RLWGAGAERPAGTAMLMCDIDDFKSLNDRLGHAEGDRCLVKVAGIIQSSVRRNRDHVARY 332

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPI- 233
           GGEEF     G+  Q A   A  +R  +E + + N +S  + ++T+S G+A +     I 
Sbjct: 333 GGEEFLVVLPGADVQAALATAERIRASVEAASLPNPASRVAPYVTLSIGVAAQGAAGEII 392

Query: 234 --STIIYRADQALYVAKKSGRNRVVCF 258
               +  +AD ALY+AKK+GRNRVV F
Sbjct: 393 GPERLQNQADTALYLAKKAGRNRVVLF 419


>gi|78356218|ref|YP_387667.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218623|gb|ABB37972.1| diguanylate cyclase (GGDEF domain) [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 674

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 86/173 (49%), Gaps = 15/173 (8%)

Query: 96  SYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFG 147
           SY + + Q++  D L+GL N   F   L ++ E+       L +   D+D+FK+IND +G
Sbjct: 501 SYQQELEQMTMTDYLTGLFNRRHFFRQLETHLEQYKRRQYNLCVALLDLDHFKRINDTYG 560

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD VI   +  L         V R GGEEF    L S  +EA  + + L K +    
Sbjct: 561 HMAGDSVIREFALLLKESLRPYDVVARFGGEEFIILLLDSGREEALGILDRLLKKVSGHT 620

Query: 208 INISSGPSIHITISAGIAERCHKEPIS-----TIIYRADQALYVAKKSGRNRV 255
            + + G  + +T S GIAE   + P S      I+  ADQ LY+AK +GRN +
Sbjct: 621 FD-AEGHHLRVTFSGGIAE-ADELPASELTPKRIVAAADQRLYLAKTAGRNTI 671


>gi|329925320|ref|ZP_08280261.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
 gi|328939928|gb|EGG36263.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
          Length = 539

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 87/188 (46%), Gaps = 29/188 (15%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHPV 150
           + Q++  D L+ + N S F+    SY          E L+ + FDID+FK+IND +GH +
Sbjct: 356 LRQMAYYDGLTRIYNRSHFMKL--SYALLNQAVRNREPLAFLLFDIDHFKRINDVYGHDI 413

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+ +  + +             R GGEEFA A  G S  EA   A  +R  +    +  
Sbjct: 414 GDQALQHIVELTRKTLRAEDLFARYGGEEFAVAMPGHSTSEATAAAERIRAKLLAQPMTT 473

Query: 211 SSGPSIHITISAGIA----------------ERCHKEPISTIIYRADQALYVAKKSGRNR 254
             GP + IT S G+A                E      +  ++ +AD++LY AK+SGRN 
Sbjct: 474 PQGP-LMITASFGVAAVKTSSHNGRVDAEAEEAWWDTELKKVLKQADRSLYEAKRSGRN- 531

Query: 255 VVCFSDIE 262
            +  SD E
Sbjct: 532 TIRVSDEE 539


>gi|308271056|emb|CBX27666.1| hypothetical protein N47_H24880 [uncultured Desulfobacterium sp.]
          Length = 347

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 95/188 (50%), Gaps = 11/188 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           + KEL  +   +  +S ID L+ + N   F         S    +  LS +  DID FK 
Sbjct: 157 VKKELEKTNKILQDISSIDGLTSIPNRRCFDDFVNREWKSAVRKSTSLSFIMIDIDNFKA 216

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            NDN+GH  GD+ +  +   L      P   V R GGEEF AA + +    A+ +A  + 
Sbjct: 217 YNDNYGHQEGDECLKQIGKVLKEAVKRPQDLVARYGGEEFIAALVDTDPNGASTVAERIC 276

Query: 201 KIIENSQINISSGPSIHI-TISAGIAERC-HKEPIS-TIIYRADQALYVAKKSGRNRVVC 257
             ++   I  +  P+ +I TIS GIA    ++E +  + I  AD+ALY+AKK GRN++  
Sbjct: 277 SKVKALNIPHAFSPTANIVTISMGIAGGIPNRESLPGSFITMADKALYLAKKEGRNQIRL 336

Query: 258 FSDIENNT 265
           FS+ E N+
Sbjct: 337 FSETEENS 344


>gi|296102343|ref|YP_003612489.1| diguanylate cyclase with GGDEF domain [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056802|gb|ADF61540.1| diguanylate cyclase with GGDEF domain [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 479

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 6/131 (4%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+++  DIDYFK INDN+GH  GD+V+A  + ++  V G    V R+GGEEFA       
Sbjct: 332 LTVMLLDIDYFKSINDNYGHECGDRVLAGFAREVQQVVGDDGMVARMGGEEFAVVVNTGD 391

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGI-----AERCHKEPISTIIYRADQA 243
            Q    LA  +R  I           ++++T+S G+     A     E  + ++  AD  
Sbjct: 392 AQHGFALAERIRLTIAAHPFTWRQQ-TLYLTVSIGLGSGKAASWQLTEVFNRLMAEADDH 450

Query: 244 LYVAKKSGRNR 254
           LY +KK+GRNR
Sbjct: 451 LYRSKKAGRNR 461


>gi|258512826|ref|YP_003186260.1| diguanylate cyclase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479552|gb|ACV59871.1| diguanylate cyclase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 402

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 11/176 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL++      + ++ D L+GL N  +F   L          N  L +   DID FKQIND
Sbjct: 225 ELWVRQILSEKEAKTDALTGLYNRKSFDEYLDFALQISDGTNTPLHLAVIDIDNFKQIND 284

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGD+++   +  +        F+ R GGEEFA      + ++A      +R+ I 
Sbjct: 285 QYGHLVGDEILRRTAQAIQQHLAAGDFLARYGGEEFAVIIPEVTHEQAVQNMEKIREYIA 344

Query: 205 N-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           N   + +    +   T+S G++     E    +  RADQ LY AK++G+N++V + 
Sbjct: 345 NVHHVELDGNRA---TVSIGLSTHRPGETRDELFERADQCLYRAKQTGKNKIVAWE 397


>gi|217974723|ref|YP_002359474.1| diguanylate cyclase [Shewanella baltica OS223]
 gi|217499858|gb|ACK48051.1| diguanylate cyclase [Shewanella baltica OS223]
          Length = 640

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 16/148 (10%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++ FD D+FK+INDNFGH +GD+ +  ++     + G    +GR+GGEEF      +  
Sbjct: 496 SVIIFDADHFKKINDNFGHELGDRALLTIASAGKALTGNKDLIGRIGGEEFLILLPNTDA 555

Query: 190 QEAAILANDLRKIIENSQINISSGPS-IHITISAGIA--------ERCHKE-PISTIIYR 239
           + A  LA+ L+  I  S +     P+ + +T+SAG+A        E  +++   ++++ R
Sbjct: 556 ERACELAHQLQAHI--SSLGAEHLPTELKLTVSAGVATLAPQPNTENTYQDRDFASLLKR 613

Query: 240 ADQALYVAKKSGRNRVVCFSDIENN-TC 266
           AD ALY AK +GRN   C    +N  TC
Sbjct: 614 ADDALYEAKNAGRN---CVKAAKNEATC 638


>gi|190573568|ref|YP_001971413.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190011490|emb|CAQ45108.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 447

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 9/168 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+GL N   F+         L  + + +++   DID+FK IND  GH  GD
Sbjct: 268 LQDLATRDFLTGLPNRRCFLEQSQRQLPQLQLHGQCVAVAMIDIDHFKHINDTHGHEAGD 327

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +  ++  +     +   + R GGEEF        + EA +   +LR+ I   +++I +
Sbjct: 328 DALRAVAGAVATHARSHDLIARFGGEEFCLLVPDMEQDEALLYFEELRQRIAALEVDIGT 387

Query: 213 GPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++ +T+S G+   R  ++ +  +I  AD+ LY+AK  GRNRV C +
Sbjct: 388 A-TLRMTVSIGLCCLRPQRDALHRLISEADRQLYLAKAGGRNRVSCTT 434


>gi|149907506|ref|ZP_01896253.1| GGDEF family protein [Moritella sp. PE36]
 gi|149809176|gb|EDM69105.1| GGDEF family protein [Moritella sp. PE36]
          Length = 347

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 83/158 (52%), Gaps = 8/158 (5%)

Query: 107 DCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GLLN   F   + ++      N   SI+  DID FK  ND+FGH +GD+V+  ++ 
Sbjct: 186 DSLTGLLNRRVFSKEIETFCSNPTLNRNFSILMVDIDNFKAFNDDFGHQLGDQVLKAIAK 245

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HI 218
           ++         V R GGEEF       +   A   A  +R+ IE   I +  +G  I +I
Sbjct: 246 RIADSCQEGEQVFRYGGEEFVLILPNKTFTIARQNAESIRRAIERLSIRDKRTGKVIDNI 305

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T+S G++E   ++    I+ RAD  LY AK+ GRNRV+
Sbjct: 306 TVSIGVSENKPRDTSHEILTRADLQLYEAKRLGRNRVM 343


>gi|154249283|ref|YP_001410108.1| response regulator receiver modulated diguanylate cyclase
           [Fervidobacterium nodosum Rt17-B1]
 gi|154153219|gb|ABS60451.1| response regulator receiver modulated diguanylate cyclase
           [Fervidobacterium nodosum Rt17-B1]
          Length = 474

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 12/160 (7%)

Query: 104 SRIDCLSGLLNHSAFIS------SLGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S +D L+GL N    +       +L  YN+K   +  FD+D FK+IND +GH VGD+V+ 
Sbjct: 295 STVDGLTGLFNKKELLRFLEETHNLSKYNKKPYYVAMFDLDNFKKINDTYGHLVGDEVLK 354

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            L   L    G     GR GGEEF        + E      ++ + +  ++      P  
Sbjct: 355 ILGKILKEAVGDKGIAGRYGGEEFTLILTKIEKDEVVDFIEEILQKVRTAEF-----PHG 409

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             T+S G+    + +  + ++  AD+ LY+AKKSG++R  
Sbjct: 410 KCTVSCGVVSSENYQSPTEVLKAADELLYIAKKSGKDRAT 449


>gi|22298593|ref|NP_681840.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294773|dbj|BAC08602.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 558

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 16/169 (9%)

Query: 100 ISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+ +D L+GL N          F++      + L I   D+DYFK+IND +GH VGD
Sbjct: 376 LKRLAEVDPLTGLSNRRKATEDIERFLTLASRQQQTLCIAVLDLDYFKRINDTYGHDVGD 435

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILANDLRKIIENSQI 208
           +V+   +  L         V R GGEEF  A  G S    +   AI    LR    N   
Sbjct: 436 QVLVTTARMLRQSLRMEDVVARWGGEEFLIALYGISLEVAKHRLAICLQRLR----NHTF 491

Query: 209 NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  +  S  +T SAGI++   H + +  ++  AD ALY AK +GR++++
Sbjct: 492 HAPNHHSFKVTFSAGISQFPTHGQSLVQLVKMADDALYAAKAAGRSQIM 540


>gi|296272209|ref|YP_003654840.1| PAS/PAC sensor-containg diguanylate cyclase [Arcobacter
           nitrofigilis DSM 7299]
 gi|296096384|gb|ADG92334.1| diguanylate cyclase with PAS/PAC sensor [Arcobacter nitrofigilis
           DSM 7299]
          Length = 703

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 98/190 (51%), Gaps = 13/190 (6%)

Query: 83  GYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFF 134
           G I G + +++      R+  LS  D L+   N   F       I+     N  L+ +  
Sbjct: 515 GKIKGYTAIRQDITDKKRVEYLSITDELTQTYNRRYFNTKIEEEINRAKRNNYYLAFIML 574

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           DID+FK  NDN+GH  GD+ +  +S  L+        F  RLGGEEF       +E+++ 
Sbjct: 575 DIDFFKLYNDNYGHHKGDETLIKVSQILIKHTARASDFAFRLGGEEFGILFSYKNEEDSL 634

Query: 194 ILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKS 250
           + A  +RK IE  +I + ++  S ++T S G+  +  K  E I T+   AD+ALY AK+S
Sbjct: 635 MYAESIRKEIEALKIEHKANEASPYLTTSLGLVVKKGKELESIDTVYKLADEALYKAKES 694

Query: 251 GRNRVVCFSD 260
           G+NR VC S+
Sbjct: 695 GKNR-VCVSN 703


>gi|256032862|pdb|3I5C|A Chain A, Crystal Structure Of A Fusion Protein Containing The
           Leucine Zipper Of Gcn4 And The Ggdef Domain Of Wspr From
           Pseudomonas Aeruginosa
 gi|256032863|pdb|3I5C|B Chain B, Crystal Structure Of A Fusion Protein Containing The
           Leucine Zipper Of Gcn4 And The Ggdef Domain Of Wspr From
           Pseudomonas Aeruginosa
          Length = 206

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 12/169 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +L   D L+GL N   F   L            +LS++  D+DYFK  ND FGH  G
Sbjct: 25  RLKKLVNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAG 84

Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-N 209
           D+ +  ++  +      +     R GGEEFA    G+S   A +LA  +R+ +E+ QI +
Sbjct: 85  DEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISH 144

Query: 210 ISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               P  H+T+S G++        +    +I  ADQALY AK +GRN+V
Sbjct: 145 DQPRPGSHLTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGRNQV 193


>gi|229526792|ref|ZP_04416196.1| sensory box/GGDEF family protein [Vibrio cholerae bv. albensis
           VL426]
 gi|229336950|gb|EEO01968.1| sensory box/GGDEF family protein [Vibrio cholerae bv. albensis
           VL426]
          Length = 642

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 18/174 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS--IVFFDIDYFKQINDNFGH 148
           NR+ +LS  D L+ L N   F  ++         Y ++    +   DID+FK+IND FGH
Sbjct: 473 NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGH 532

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+  ++  +        F+ R+GGEEFA     +S +EA  + N +R       +
Sbjct: 533 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVR-------L 585

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +I+S     +T+S G+ + C     S    RAD ALY +K SGRN++   + +E
Sbjct: 586 HIASLHHQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTAME 637


>gi|121585593|ref|ZP_01675389.1| sensory box/ggdef family protein [Vibrio cholerae 2740-80]
 gi|153820667|ref|ZP_01973334.1| sensory box/ggdef family protein [Vibrio cholerae B33]
 gi|254225178|ref|ZP_04918791.1| sensory box/GGDEF family protein [Vibrio cholerae V51]
 gi|255746536|ref|ZP_05420483.1| sensory box/GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262158874|ref|ZP_06029987.1| sensory box/GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|121550210|gb|EAX60224.1| sensory box/ggdef family protein [Vibrio cholerae 2740-80]
 gi|125622277|gb|EAZ50598.1| sensory box/GGDEF family protein [Vibrio cholerae V51]
 gi|126521710|gb|EAZ78933.1| sensory box/ggdef family protein [Vibrio cholerae B33]
 gi|255736290|gb|EET91688.1| sensory box/GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262029447|gb|EEY48098.1| sensory box/GGDEF family protein [Vibrio cholerae INDRE 91/1]
          Length = 627

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 18/174 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS--IVFFDIDYFKQINDNFGH 148
           NR+ +LS  D L+ L N   F  ++         Y ++    +   DID+FK+IND FGH
Sbjct: 458 NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGH 517

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+  ++  +        F+ R+GGEEFA     +S +EA  + N +R       +
Sbjct: 518 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVR-------L 570

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +I+S     +T+S G+ + C     S    RAD ALY +K SGRN++   + +E
Sbjct: 571 HIASLHHQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTAME 622


>gi|315127420|ref|YP_004069423.1| diguanylate cyclase with PAS/PAC sensor [Pseudoalteromonas sp.
           SM9913]
 gi|315015934|gb|ADT69272.1| diguanylate cyclase with PAS/PAC sensor [Pseudoalteromonas sp.
           SM9913]
          Length = 331

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 11/170 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
           YNR+   +  D L+GL N  A   SL  Y        + L+ +  D+D+FK+ ND +GH 
Sbjct: 158 YNRLKIQASTDHLTGLANRLALDESLKKYWQESIQSQQPLTSILIDVDHFKKFNDTYGHI 217

Query: 150 VGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ- 207
            GDK +  ++  L+  +        R GGEEFA        + A I+A  +++ I     
Sbjct: 218 KGDKCLQKIAKMLLHCIPSRECLAARYGGEEFAIILPRCDIKSATIVAKHVQQQINAMTF 277

Query: 208 INISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
            +I   P + +++S GIA   + +      ++Y AD ALY AK  GRN++
Sbjct: 278 TDIGLPPEVKVSVSQGIASENNNQYRTYEALLYAADTALYRAKTEGRNKI 327


>gi|313683192|ref|YP_004060930.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313156052|gb|ADR34730.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 452

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 19/196 (9%)

Query: 71  LVIISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSL 122
           L++I+  ISL+   I  S+   EL I+ N    L+  D L+ + N  A+       IS+ 
Sbjct: 263 LMLITYLISLVFVIIGTSLHHAELIININ----LTNTDNLTKVKNVKAYKERINELISNF 318

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD--QLVVVFGTPMFVGRLGGEEF 180
             Y    S++ FDID FK IND  GH  GD V+  LS   Q  V     +F  R+GGEEF
Sbjct: 319 ERYKIPFSMMIFDIDDFKMINDTHGHRAGDIVLMELSALVQKNVRHTDTLF--RVGGEEF 376

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                 ++  +A  +AN ++ ++EN    I   P+  ITIS GI++   ++   T+  R 
Sbjct: 377 VILCPNTALHDAIDVANKIKNVVENELTVI---PNQRITISIGISQVKEEDAEDTLYRRV 433

Query: 241 DQALYVAKKSGRNRVV 256
           D  LY +K++G+N++ 
Sbjct: 434 DGLLYQSKQNGKNKIT 449


>gi|307304777|ref|ZP_07584527.1| diguanylate cyclase [Shewanella baltica BA175]
 gi|306912179|gb|EFN42603.1| diguanylate cyclase [Shewanella baltica BA175]
          Length = 640

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 16/148 (10%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++ FD D+FK+INDNFGH +GD+ +  ++     + G    +GR+GGEEF      +  
Sbjct: 496 SVIIFDADHFKKINDNFGHELGDRALLTIASAGKALTGNKDLIGRIGGEEFLILLPNTDA 555

Query: 190 QEAAILANDLRKIIENSQINISSGPS-IHITISAGIA--------ERCHKEP-ISTIIYR 239
           + A  LA+ L+  I  S+      P+ + +T+SAG+A        E  +++   ++++ R
Sbjct: 556 ERACELAHQLQAHI--SRQGAEDLPAELKLTVSAGVATLAPQTNTENTYQDKDFASLLKR 613

Query: 240 ADQALYVAKKSGRNRVVCFSDIENN-TC 266
           AD ALY AK +GRN   C    +N  TC
Sbjct: 614 ADDALYEAKNAGRN---CVKAAKNEATC 638


>gi|288961995|ref|YP_003452305.1| GGDEF domain-containing protein [Azospirillum sp. B510]
 gi|288914275|dbj|BAI75761.1| GGDEF domain-containing protein [Azospirillum sp. B510]
          Length = 262

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 77/158 (48%), Gaps = 8/158 (5%)

Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S+ D L+ L N    I  L       G      +++  DID+FK++ND FGH  GD V+ 
Sbjct: 101 SQTDPLTDLPNRRQMIERLEAELCRVGRSGGSFALIMVDIDHFKEVNDAFGHAAGDHVLV 160

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             +  L     T     R GGEEF      + + +A  +A  LR+++ N+ I    G  I
Sbjct: 161 ETACLLRRNLRTHDLCARWGGEEFLILLPDAKQFQAEAVAEKLRELVANTAIE-HQGHGI 219

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            IT+S G+A           I  AD ALYVAK++GRNR
Sbjct: 220 AITLSLGVAAYQPGGTADACIQAADDALYVAKRNGRNR 257


>gi|295700239|ref|YP_003608132.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
 gi|295439452|gb|ADG18621.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
          Length = 399

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 91/185 (49%), Gaps = 32/185 (17%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           I G +L+E           SR D L+ L N   F       IS    +   ++++ FD+D
Sbjct: 213 IHGELLRE-----------SRTDYLTRLGNRKLFFEQGEQVISEHQMHRRPVALLAFDLD 261

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK+IND +GH  GD+V+   ++ +    GT   + R+GGEEFAA   G   + A     
Sbjct: 262 HFKRINDRYGHKTGDEVLRSFAETVRAETGTDAILARIGGEEFAALLPGHDTERA----- 316

Query: 198 DLRKIIEN------SQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKS 250
             +K+ E       +  + + G  I  T+S G+AE   +   ++ ++  ADQALY AK  
Sbjct: 317 --KKVGETVASRFAAMSHGADGDRIRATVSIGLAESNRETTSLTDLLSAADQALYRAKSL 374

Query: 251 GRNRV 255
           G NR+
Sbjct: 375 GGNRL 379


>gi|24373609|ref|NP_717652.1| GGDEF family protein [Shewanella oneidensis MR-1]
 gi|24347944|gb|AAN55096.1|AE015647_2 GGDEF family protein [Shewanella oneidensis MR-1]
          Length = 319

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 10/177 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
           G  ++ L      +S  +  D L+ L N  A+       I      + + S++  DID F
Sbjct: 139 GQEVQNLKTEMENLSLAAMTDQLTSLHNRRAYEIAIQDHIHRAEEQHTRCSLLLIDIDRF 198

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND +GH VGDKV+A+++  L        FV R GGEEF      +   +A  +A  L
Sbjct: 199 KVFNDTYGHQVGDKVLAYVALALKQCVRGDDFVARYGGEEFVVLLPNTHFHDALQVAETL 258

Query: 200 RKIIENSQINISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           R  I   ++ I     +    IT+S G+A     +   T+  RAD+ALY AK  GRN
Sbjct: 259 RGRISERRLAIGKDKKLSLGAITVSIGLASLQKGDDAETLFSRADKALYEAKSDGRN 315


>gi|39937172|ref|NP_949448.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009]
 gi|39651030|emb|CAE29553.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris
           CGA009]
          Length = 297

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 11/156 (7%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N + F       +     Y  +L+++ +DID+FK++ND  GH  GD+V+  LS
Sbjct: 130 DPLTGLFNRAKFDLVLRHELIRAERYGTQLALIVYDIDHFKEVNDAHGHQAGDRVLVQLS 189

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + +         + R GGEEF      +    A ++A+ L + I  +  ++       IT
Sbjct: 190 EIVSCEIRQTDLLVRWGGEEFVVVLPATDGMTACLVADKLGRAIAQATFDLVG----TIT 245

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+++    + + T++ R D ALY AK +GRNRV
Sbjct: 246 CSFGVSDFVIGDSVDTLLARTDNALYRAKMNGRNRV 281


>gi|126172919|ref|YP_001049068.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|125996124|gb|ABN60199.1| diguanylate cyclase [Shewanella baltica OS155]
          Length = 369

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 78/134 (58%), Gaps = 12/134 (8%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++ FD D+FK+INDNFGH +GD+ +  ++     + G    +GR+GGEEF      +  
Sbjct: 225 SVIIFDADHFKKINDNFGHELGDRALLTIASAGKALTGNKDLIGRIGGEEFLILLPNTDA 284

Query: 190 QEAAILANDLRKIIENSQINISSGPS-IHITISAGIA--------ERCHKEP-ISTIIYR 239
           + A  LA+ L+  I  S++     P+ + +T+SAG+A        E  +++   ++++ R
Sbjct: 285 ERADELAHQLQAHI--SRLGAEDLPAELKLTVSAGVATLAPQTNTENTYQDKDFASLLKR 342

Query: 240 ADQALYVAKKSGRN 253
           AD ALY AK +GRN
Sbjct: 343 ADDALYEAKNAGRN 356


>gi|218248505|ref|YP_002373876.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8801]
 gi|218168983|gb|ACK67720.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8801]
          Length = 660

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 101/208 (48%), Gaps = 19/208 (9%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY- 125
           E +SL + S+   L +      +L++L  +  +++ L+ +D L+ + N   F   L    
Sbjct: 453 EEMSL-LESVAAQLGIAIAHSHLLEQLKEANEKLAALANLDGLTQVANRRHFDEILAQRW 511

Query: 126 ------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGE 178
                  + LS++  D+DYFK+ ND +GH +GD+ +  ++  +      P   V R GGE
Sbjct: 512 KQCAREKQPLSLIMCDVDYFKRYNDFYGHQMGDECLIKVAQTIAKTVQRPGDLVARWGGE 571

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIA---------ERC 228
           EFA     +       +A  +R+ +++  I     P    ++IS GIA         E  
Sbjct: 572 EFAVILPNTDVNGVKYIAQSIREQVQSLAIIHEDSPIKNQVSISLGIATIIPPAKTLENN 631

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256
           H+  I  +I +ADQALY AK+ GR+R+ 
Sbjct: 632 HESLIKALIAQADQALYQAKEQGRDRIA 659


>gi|165932901|ref|YP_001649690.1| response regulator PleD [Rickettsia rickettsii str. Iowa]
 gi|165907988|gb|ABY72284.1| GGDEF family protein [Rickettsia rickettsii str. Iowa]
          Length = 450

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 76/158 (48%), Gaps = 8/158 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F       I      + KL ++  DID FK +ND +GH  GDKV+  +S
Sbjct: 291 DGLTGLFNRRYFDIHLKQIIEKTNKESIKLCLLMCDIDNFKHVNDTYGHQAGDKVLTIVS 350

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHI 218
             L         + R GGEEF          +A   A  +R  IE    +I      +  
Sbjct: 351 RILKNTLRVTDLIARFGGEEFTILLTDIDISKAIETAERVRVKIEYMNFHIEDQIEPLKT 410

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           TIS G+ +   +E I + I RAD+A+Y AK +G+N+VV
Sbjct: 411 TISIGVTKYKKEESIESFIERADKAMYEAKTTGKNKVV 448


>gi|330503632|ref|YP_004380501.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328917918|gb|AEB58749.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 406

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 7/165 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +  L+  D L+ LLN    + +L +           ++  DID+FK IND  GH VGD
Sbjct: 234 DELRSLAAHDPLTRLLNRRGLMDALEAQFRLRAASPAYLLIVDIDHFKNINDTHGHKVGD 293

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
            V+  ++D L         + RLGGEEF   AL + E  A  LA  +R  IE S +  S 
Sbjct: 294 LVLCHVADVLTSTARQGDLICRLGGEEFVVVALETDEAGARQLAERIRAAIELSAVPASG 353

Query: 212 SGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
              +I  T + G+A+  +  +     +  AD ALY  K +GRNRV
Sbjct: 354 EKQAIRCTATIGVADVFNAAQAFDLALQHADAALYRGKTAGRNRV 398


>gi|289663084|ref|ZP_06484665.1| putative sensor protein [Xanthomonas campestris pv. vasculorum
            NCPPB702]
          Length = 1011

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 8/174 (4%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            +L  L I  +   + +  D L+GL N   F       IS        L +   DID+FK+
Sbjct: 836  LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSARPLVLAILDIDHFKR 895

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            IND++ H  GD V+  +   L           RLGGEEFA     ++ +EA  L   +R 
Sbjct: 896  INDHYSHASGDAVLHEVGVLLTAAARASDLPARLGGEEFALLLADTTLEEAQALCLRIRA 955

Query: 202  IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  +++ +  S   + +T SAG+AE    +  S+++ RAD ALY AK +GR+R+
Sbjct: 956  LF-HARHDWGSVEGLQVTFSAGVAELRDDDTGSSLMQRADHALYEAKSAGRDRI 1008


>gi|315187397|gb|EFU21153.1| diguanylate cyclase [Spirochaeta thermophila DSM 6578]
          Length = 298

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 94/194 (48%), Gaps = 10/194 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           ++L  ++I + LL+     +I  EL     R+ +LS  D L+GL N   F   L      
Sbjct: 104 VALTGVTIGVMLLIRMYRMTI-SELSEKQRRLIELSITDDLTGLYNARYFYRRLEEEIAR 162

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              Y   LS++F D+D FK+ ND +GH  GD+V+  ++  L           R GGEEF 
Sbjct: 163 SRRYGRPLSLLFIDLDDFKRFNDTYGHLAGDRVLRKVARVLRESLRENDSAYRYGGEEFV 222

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                +  +E  + A  +R+ IE  + +      + +T S G+ E    + I   + RAD
Sbjct: 223 IILPETGAEEGRVAAERVRRRIE--ECSFRGEEKVKVTASVGVVEYREGDAIEDFVRRAD 280

Query: 242 QALYVAKKSGRNRV 255
           QA+Y AK  G+NRV
Sbjct: 281 QAMYRAKAEGKNRV 294


>gi|307319822|ref|ZP_07599246.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sinorhizobium meliloti AK83]
 gi|306894553|gb|EFN25315.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sinorhizobium meliloti AK83]
          Length = 530

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 24/182 (13%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  L+  D L+ L N S+F   L         +++ L+++  D+D FK +ND FGH  GD
Sbjct: 100 IEHLAHHDALTDLSNRSSFDRRLRQALAAAVHHDDALAVLCLDLDRFKAVNDIFGHGEGD 159

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKI----IENSQ 207
           +++  ++D L    G    + RLGG+EFA    G+++ EAA +LA+ + K+    ++  +
Sbjct: 160 RILRKVADILRAAAGEADTIARLGGDEFAIVQTGAAQPEAARLLADRILKLFSEEMDTRR 219

Query: 208 INISSGPSIHITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             ++ G SI + I  G    AER +          AD ALY AK++G+  + CF D E +
Sbjct: 220 DPMAVGVSIGVAICPGDGTTAERLYGN--------ADTALYRAKQTGKG-IACFFDAEMD 270

Query: 265 TC 266
             
Sbjct: 271 AA 272


>gi|292489502|ref|YP_003532390.1| hypothetical protein EAMY_3035 [Erwinia amylovora CFBP1430]
 gi|292898286|ref|YP_003537655.1| signal transduction protein [Erwinia amylovora ATCC 49946]
 gi|291198134|emb|CBJ45239.1| putative signal transduction protein [Erwinia amylovora ATCC 49946]
 gi|291554937|emb|CBA22905.1| Uncharacterized protein yhcK [Erwinia amylovora CFBP1430]
 gi|312173678|emb|CBX81932.1| Uncharacterized protein yhcK [Erwinia amylovora ATCC BAA-2158]
          Length = 365

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 7/181 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQ 141
           +  ++++L+        LS +D L+GL N     + L    ++L+    ++  DID+FK 
Sbjct: 173 TRRLVRQLYEEKETYCDLSMLDPLTGLYNRRGLKNRLADIADQLTGNHYVLLLDIDHFKA 232

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            NDN+GH +GD+ +  +S  +     +   V R GGEEF       +E  A   A  +R+
Sbjct: 233 YNDNYGHAMGDQALTRVSVAIRDAVRSRDIVTRYGGEEFLVLLTNVNESIAIKQAERIRE 292

Query: 202 IIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +   +I    +   +  +TIS G+A     +     +  AD+ALY+AK  GRNRV    
Sbjct: 293 FVLGLEIPHRFNDKVATQVTISVGVAPLI-ADDFDKALAHADRALYLAKSRGRNRVTHLQ 351

Query: 260 D 260
           D
Sbjct: 352 D 352


>gi|78060881|ref|YP_370789.1| diguanylate cyclase [Burkholderia sp. 383]
 gi|77968766|gb|ABB10145.1| diguanylate cyclase (GGDEF domain) [Burkholderia sp. 383]
          Length = 527

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 15/207 (7%)

Query: 68  NLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           + ++ I S  ++L +G++  S+L     ++   +   +  L+R D L+GL N      +L
Sbjct: 310 DRAIPIGSAMVALAIGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRMLDVTL 369

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGR 174
                +       LS++F D+DYFK+ ND  GH  GD  +A +   +      P  +  R
Sbjct: 370 AREWRRAARSQHALSLLFIDVDYFKRYNDTQGHQAGDDALAAVGHCIAGCLRRPADYAAR 429

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEP 232
            GGEEF           A  +A  +R  I +  I   +G S  +T+S G+      H + 
Sbjct: 430 YGGEEFLVVLPDVDTTGAVAIAETIRTGILDLGIRHDAGTSGRLTVSIGVTTSYPEHDDD 489

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFS 259
           +   +  AD ALY AK+ GRNR+V  +
Sbjct: 490 MQGALKLADDALYRAKEGGRNRIVVHA 516


>gi|307308958|ref|ZP_07588641.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Sinorhizobium meliloti BL225C]
 gi|306900592|gb|EFN31205.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Sinorhizobium meliloti BL225C]
          Length = 770

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 24/182 (13%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  L+  D L+ L N S+F   L         +++ L+++  D+D FK +ND FGH  GD
Sbjct: 337 IEHLAHHDALTDLSNRSSFDRRLRQALAAAVHHDDALAVLCLDLDRFKAVNDIFGHGEGD 396

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKI----IENSQ 207
           +++  ++D L    G    + RLGG+EFA    G+++ EAA +LA+ + K+    ++  +
Sbjct: 397 RILRKVADILRAGAGEADTIARLGGDEFAIVQTGAAQPEAARLLADRILKLFSEEMDTRR 456

Query: 208 INISSGPSIHITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             ++ G SI + I  G    AER +          AD ALY AK++G+  + CF D E +
Sbjct: 457 DPMAVGVSIGVAICPGDGTTAERLYGN--------ADTALYRAKQTGKG-IACFFDAEMD 507

Query: 265 TC 266
             
Sbjct: 508 AA 509


>gi|294828214|ref|NP_713112.2| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
 gi|293386064|gb|AAN50130.2| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
          Length = 306

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 98/204 (48%), Gaps = 31/204 (15%)

Query: 84  YISGSILKELFISYNRISQLSR--------------IDCLSGLLNHSAFISSLGS----- 124
           Y++G  + E   +  +ISQL+                D L+ L N  AF + L S     
Sbjct: 107 YVTGRDITETIEANRQISQLATELKEANDLLFEQATTDPLTKLKNRRAFTNDLHSLLRFM 166

Query: 125 YNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
             EK  LS++  D+D+FK  ND FGH  GDKV+  L+  L     +   +GR GGEEF A
Sbjct: 167 QQEKSFLSLLMIDVDHFKTYNDQFGHLAGDKVLVCLAKVLENTLRSNDLLGRFGGEEFVA 226

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA----ERCHKEPIST-II 237
           A   + E+++  +   L   +        S     ITIS GI+    E+   +  ST +I
Sbjct: 227 ALPNTCEKKSIEIGERLVNAVREFNWEYRS-----ITISVGISTSDFEKKQLDVDSTNLI 281

Query: 238 YRADQALYVAKKSGRNRVVCFSDI 261
            +AD+ALY +K +GRN+    S I
Sbjct: 282 EKADKALYQSKVNGRNKATHSSQI 305


>gi|284042297|ref|YP_003392637.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
 gi|283946518|gb|ADB49262.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
          Length = 994

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 55/173 (31%), Positives = 85/173 (49%), Gaps = 9/173 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  ++  D L+GLLN  +F       I  +  Y  + + +  DID FK IND  GH VG
Sbjct: 560 QLQHMADHDPLTGLLNRRSFERELNQHIHRVERYGAEGAALVLDIDRFKHINDTLGHNVG 619

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D++I  ++  L         + RLGG+EFA       +QEA  +A  +   +    +  +
Sbjct: 620 DELIVKVAQTLRSRLRDSDVLARLGGDEFAVLLPKGGQQEAEAVAESILASVRAQSVLTT 679

Query: 212 SGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIE 262
           +G    IT S GIA       +S   ++  AD A+Y AK++GR+R   FS  E
Sbjct: 680 AGRRRPITTSVGIALFGETGGLSAEDVLVNADLAMYDAKEAGRDRAATFSSQE 732


>gi|134099828|ref|YP_001105489.1| diguanylate cyclase [Saccharopolyspora erythraea NRRL 2338]
 gi|133912451|emb|CAM02564.1| diguanylate cyclase (GGDEF domain) [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 696

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 10/171 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL     F + L             L++   DID+FK IND +GHPVGD+V
Sbjct: 322 RLAVTDVLTGLCTRRYFEAHLPQAMARCERAGRPLAVFIIDIDHFKSINDRYGHPVGDRV 381

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   + +L         + R GGEEFA  AL         +A  LR  +    + +S+  
Sbjct: 382 LVETATRLRRAVREGDVLARYGGEEFALLALDVDRAAVTGMAERLRAAVGGMPVELSTAD 441

Query: 215 SIHITIS--AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
              +T+S  A   +   + P   +I  AD+ALY AK  GR+RV    ++E+
Sbjct: 442 RAWVTVSVGAAGGDGVGRSP-QQLIADADRALYAAKAMGRDRVALGDELEH 491


>gi|154248965|ref|YP_001409790.1| diguanylate cyclase [Fervidobacterium nodosum Rt17-B1]
 gi|154152901|gb|ABS60133.1| diguanylate cyclase [Fervidobacterium nodosum Rt17-B1]
          Length = 1320

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 87/171 (50%), Gaps = 20/171 (11%)

Query: 104  SRIDCLSGLLNHSAFISSLGSY-----NEK--LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
            S +D L+ L     F   L  Y     N+K  L+IV  DID FK+IND +GH  GDKV+ 
Sbjct: 1148 SYVDPLTKLFTRYYFAELLSQYFENAVNQKDSLAIVMCDIDNFKKINDTYGHLTGDKVLK 1207

Query: 157  FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             ++  L     T   VGR GGEEF  A   +  +E  ++   LR++I++ Q      P  
Sbjct: 1208 TIAKILRDNVRTTDIVGRFGGEEFIMAFPSTDSEEVVLILERLRRLIKDVQ----EFP-F 1262

Query: 217  HITISAGIAERCH-------KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +T+S G+            K P   +I  AD ALY AK +G++++V +S+
Sbjct: 1263 KLTLSFGVVSYPQDTENIIIKAP-EDLIRLADTALYHAKNTGKDKIVVYSE 1312


>gi|260221718|emb|CBA30562.1| hypothetical protein Csp_C24170 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 519

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 16/178 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           L +L    +R+S  +R D L+G LN           IS++      LS+   DID FK++
Sbjct: 345 LAKLHKELDRVSLQARHDALTGALNRKGLDEALNREISTMRRNESVLSVALLDIDNFKKL 404

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILAND 198
           ND  GH  GD  +  L+            + R GGEEF        L    +    L  +
Sbjct: 405 NDTLGHATGDVALTHLAAVAKECMRPQDTLARYGGEEFVILLPDTPLDKGIEAMTRLQRE 464

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           L K     +  ++    + IT SAG+A+   +E  +  I RADQA+Y+AK++G+NRV+
Sbjct: 465 LTK-----RFFLAGTEKVLITFSAGVAQVLAEEEPADAIRRADQAMYLAKRAGKNRVL 517


>gi|163751215|ref|ZP_02158443.1| GGDEF family protein [Shewanella benthica KT99]
 gi|161328929|gb|EDQ00003.1| GGDEF family protein [Shewanella benthica KT99]
          Length = 334

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 86/159 (54%), Gaps = 12/159 (7%)

Query: 107 DCLSGLLNHSAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+G+ N  AF +    SL    + L ++  DID+FK  NDN+GH +GD+V+  ++ +L
Sbjct: 175 DALTGIFNRRAFDNDLRGSLSQSPDGLCLILVDIDHFKTFNDNYGHQLGDQVLKAVAKRL 234

Query: 163 VVVFGTPMFVGRLGGEEFA----AAALGSSEQEAAILANDLRKI-IENSQINISSGPSIH 217
           +        + R GGEEFA     + L SS   A  +   L KI +++ + N+       
Sbjct: 235 LEACRNGAKIYRYGGEEFAVIIPKSQLSSSRHLAESMRRGLEKISLKDRRKNVRIN---K 291

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           IT S G+A+       + +I +AD+ LY AK+ GRNRV+
Sbjct: 292 ITASFGVAQWHKNLEGAELIEKADKLLYEAKRLGRNRVM 330


>gi|163792352|ref|ZP_02186329.1| hypothetical protein BAL199_15933 [alpha proteobacterium BAL199]
 gi|159182057|gb|EDP66566.1| hypothetical protein BAL199_15933 [alpha proteobacterium BAL199]
          Length = 403

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 78/171 (45%), Gaps = 11/171 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +   I  L+R D L+GL N   F       I+        LS++  D DYFK++ND
Sbjct: 226 ELRRARQDIETLARTDSLTGLWNRRHFEDMIEVEIARSQDEGSPLSLLAIDADYFKRVND 285

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD V+  L+D L         + R GGEEF      +   EAA LA  +R  + 
Sbjct: 286 RFGHHTGDAVLRELTDLLGQQIRERDVLCRWGGEEFIILLPATDRDEAAALAGTIRNAVA 345

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                        +T+S G+      E     + R D ALY AK++GRN+V
Sbjct: 346 GYGFTAIE----TMTVSIGVGLILADETAEDWLRRVDSALYDAKQNGRNQV 392


>gi|116253214|ref|YP_769052.1| GGDEF/EAL transmembrane sensory box protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115257862|emb|CAK08960.1| putative GGDEF/EAL transmembrane sensory box protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 783

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 14/178 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  S +R  + +  D L+GLLN   F       I++  +  ++L+ +F D+D FK IND
Sbjct: 336 ELKASEDRNHRQAITDHLTGLLNRQGFEAVLDNKIAAADAAGQELACLFVDLDRFKWIND 395

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKII 203
           N GH  GD  +  L ++L           RLGG+EFA       +E  A ++   +  I 
Sbjct: 396 NMGHAAGDMALVELVERLKTHLAPSDEAARLGGDEFAILLPAKDAENRAKVMCEQIASIF 455

Query: 204 ENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +         P +H++ S GIA    H E  + ++ ++D A+Y  K+ G+N    F +
Sbjct: 456 DTPFT-----PDMHLSASVGIAIYPHHAETAAELLQKSDMAMYAKKRDGKNGAQLFDN 508


>gi|45657015|ref|YP_001101.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|45600252|gb|AAS69738.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 319

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 90/186 (48%), Gaps = 21/186 (11%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEK---LSIVFFDIDYFKQIND 144
           EL  + +++ + +  D L+ L N   F   L       N+K   LS++  D+D+FK  ND
Sbjct: 137 ELKDANDKLFEQASTDPLTKLKNRRTFNEELKDLIVHTNKKRGFLSLLMIDVDHFKTYND 196

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGHP GD+V+  L+  L         + R GGEEF  A   + E +A  +A+ L   I+
Sbjct: 197 QFGHPAGDQVLIRLASVLTYALRVSDLLARFGGEEFVVALPETGEYKAIEVADRLVVTIQ 256

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIST---------IIYRADQALYVAKKSGRNRV 255
                  +  +  ITIS GIA      P+ST         I+  AD+ALY +K +GRN+ 
Sbjct: 257 K-----ETWENRPITISVGIATLDFSLPVSTFRDTDFSTRIVEEADRALYRSKANGRNQA 311

Query: 256 VCFSDI 261
              S I
Sbjct: 312 THCSQI 317


>gi|330965674|gb|EGH65934.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 677

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 79/157 (50%), Gaps = 8/157 (5%)

Query: 106 IDCLSGLLNHSAFISSLGS-----YNEKLSIV--FFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+GL N +A+   L         EK S++    D+D+FK+IND +GH  GDKV+  +
Sbjct: 519 IDPLTGLPNRAAWGERLEQEMADWQREKNSLLVCILDLDHFKRINDGYGHLAGDKVLKIV 578

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +           F+ R GGEEF      +       L ++LR  +E    +   G  + I
Sbjct: 579 AHVFKKRLRPADFLARFGGEEFVMLLPATPSGTGLTLLDELRTAVELCPFHFK-GERVTI 637

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T+S G+      E   T I RADQALY AK +GRNRV
Sbjct: 638 TVSIGVTALRTGERSDTAIKRADQALYKAKANGRNRV 674


>gi|212635867|ref|YP_002312392.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212557351|gb|ACJ29805.1| GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 321

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 84/158 (53%), Gaps = 10/158 (6%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+G LN  AF   I  L   N + L ++  DID+FK  ND +GH +GD+V+  ++ +L
Sbjct: 163 DALTGALNRRAFNKDIKGLVEQNPQGLCLIITDIDHFKLFNDTYGHQLGDQVLKAVARRL 222

Query: 163 VVVFGTPMFVGRLGGEEFA----AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
                    + R GGEEFA     + LG + Q A  +   L K++   +       ++  
Sbjct: 223 GESCHEGSKLYRFGGEEFALLVPKSQLGRARQLAESMRRSLEKLVLKDKRKDQRVDNVRA 282

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +   G+A+   K+  ST+I RAD+ LY AK+ GRNRV+
Sbjct: 283 SF--GVAQYQDKDSDSTLIERADKQLYEAKRLGRNRVM 318


>gi|195953696|ref|YP_002121986.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195933308|gb|ACG58008.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 441

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 103 LSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+   N         A + +  +     S++ FDID FK+IND +GH  GD ++
Sbjct: 273 LSETDELTKAYNRRFFDEILDALVDAYKNKTAPFSLIIFDIDDFKKINDTYGHDAGDLIL 332

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +S+ +           R+GGEEFA          A +++  LRKI+E +        +
Sbjct: 333 KRISELVKANIRQEDIFCRIGGEEFAIILKQIDIFGAYVVSEKLRKIVETTNFTYKD-KT 391

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           I  TIS G+AE    +   T+  +AD+ALYV+K SG+N
Sbjct: 392 IKTTISLGVAEFGKNDTKETLFKKADRALYVSKTSGKN 429


>gi|148258088|ref|YP_001242673.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
 gi|146410261|gb|ABQ38767.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
          Length = 777

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 84/171 (49%), Gaps = 12/171 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           RIS L+R D L+ L N  +F   +           E  +++F D+D FKQ+ND  GHP G
Sbjct: 332 RISHLARYDELTTLPNRVSFRDEIERLLRIPPRQGELSALLFVDLDRFKQVNDTLGHPCG 391

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN-SQIN 209
           D+++  +S++L  +     FV R GG+EF        S  +AA+LA   R+I++  S+  
Sbjct: 392 DQLLCAVSERLRDMLRPEDFVARFGGDEFVVFQRNIRSNDDAAVLA---RRIVDQLSERY 448

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                 + I  S GIA         T++  AD ALY AK  GR     F D
Sbjct: 449 KIDNHLVEIGASVGIAMTAPGISADTLLKNADMALYRAKAEGRGTFCFFRD 499


>gi|312197162|ref|YP_004017223.1| phytochrome sensor protein [Frankia sp. EuI1c]
 gi|311228498|gb|ADP81353.1| putative phytochrome sensor protein [Frankia sp. EuI1c]
          Length = 1637

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 88/175 (50%), Gaps = 11/175 (6%)

Query: 91   KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
            ++L  + +R+ QLS  D L+GL N       L        SY   L++   DID+FK  N
Sbjct: 1449 EQLAAANHRLEQLSATDPLTGLANRRQLNEFLNDAWYRAASYGTPLALAMIDIDHFKAYN 1508

Query: 144  DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            D FGH VGD  +  ++  L           R GGEEF     G+    A  +A+ LR  +
Sbjct: 1509 DFFGHTVGDLCLRRVAACLARCTRDTDLAARYGGEEFVVVMPGADSVTATQIAHRLRTAV 1568

Query: 204  EN-SQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRV 255
            E+ ++ +  +   I +T+S GIA      ++ ++ ++  AD ALY+AK  GRNRV
Sbjct: 1569 EDLAEPHPRTDERI-VTVSIGIATTTPGPRDDVAALLEVADAALYLAKNGGRNRV 1622


>gi|269140102|ref|YP_003296803.1| hypothetical protein ETAE_2759 [Edwardsiella tarda EIB202]
 gi|267985763|gb|ACY85592.1| hypothetical protein ETAE_2759 [Edwardsiella tarda EIB202]
 gi|304559938|gb|ADM42602.1| hypothetical protein ETAF_2500 [Edwardsiella tarda FL6-60]
          Length = 489

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 92/183 (50%), Gaps = 19/183 (10%)

Query: 89  ILKELFISYNRISQLSR-------IDCLSGLLNHSAFISS----LGSYNEKLSIVFFDID 137
           +L+ L     ++ QL++       ID L+G+ N  +F+      L      +++  FD+D
Sbjct: 300 VLQALAAQREQLEQLNQALTLQASIDYLTGIRNRRSFVQHFAPLLQHARSLVALALFDLD 359

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILA 196
           YFK  ND +GH  GD+ + + S+++   F  P   +GR GGEEF   AL S++ +  IL 
Sbjct: 360 YFKHYNDTYGHQAGDEALIYFSNEMRRHFKEPDSLIGRFGGEEF--IALCSADGQCNILE 417

Query: 197 NDLRKIIENSQINISSGPSIHITISAG---IAERC-HKEPISTIIYRADQALYVAKKSGR 252
             L K+ E+           H+T+S G   +   C   +    ++  AD+ LY AK +GR
Sbjct: 418 R-LDKLRESLDYGSDEALPGHLTVSIGCVLVPRECVTPQSFDALVRYADEMLYQAKNTGR 476

Query: 253 NRV 255
           NR+
Sbjct: 477 NRL 479


>gi|289828471|ref|ZP_06546329.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 365

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 25/203 (12%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
            LSL +I +   LL  ++S     +L     R+  +S  D ++G+ N   +   L +   
Sbjct: 169 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 227

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               ++ + +++  DID+FK IND +GH  GD+ I  L+ QL +       +GR GG+EF
Sbjct: 228 HSRRHHREATLLIIDIDHFKSINDTWGHDAGDEAIIALTRQLQITLRGSDIIGRFGGDEF 287

Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237
           A    G+   ++AI A  + ++ E  + + +   P + + IS G+A      P++  I  
Sbjct: 288 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 338

Query: 238 YR-----ADQALYVAKKSGRNRV 255
           YR     AD ALY AK +GRNR 
Sbjct: 339 YREWLKSADMALYKAKNAGRNRT 361


>gi|24113329|ref|NP_707839.1| hypothetical protein SF2000 [Shigella flexneri 2a str. 301]
 gi|110805923|ref|YP_689443.1| hypothetical protein SFV_1998 [Shigella flexneri 5 str. 8401]
 gi|24052340|gb|AAN43546.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|110615471|gb|ABF04138.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|313650178|gb|EFS14591.1| cellulose synthesis regulatory protein [Shigella flexneri 2a str.
           2457T]
 gi|332757308|gb|EGJ87645.1| cellulose synthesis regulatory protein [Shigella flexneri 2747-71]
 gi|332757522|gb|EGJ87857.1| cellulose synthesis regulatory protein [Shigella flexneri K-671]
 gi|332766694|gb|EGJ96898.1| diguanylate cyclase domain protein [Shigella flexneri 2930-71]
 gi|333003334|gb|EGK22880.1| cellulose synthesis regulatory protein [Shigella flexneri K-218]
 gi|333017542|gb|EGK36854.1| cellulose synthesis regulatory protein [Shigella flexneri K-304]
          Length = 494

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ LL  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 301 TMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 360

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G++ 
Sbjct: 361 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGANL 420

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            +AA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 421 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 480

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 481 KQAGRNRV 488


>gi|73541438|ref|YP_295958.1| PAS:GGDEF [Ralstonia eutropha JMP134]
 gi|72118851|gb|AAZ61114.1| PAS:GGDEF [Ralstonia eutropha JMP134]
          Length = 476

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 113/238 (47%), Gaps = 21/238 (8%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
            + + + F A+   ++   L Y    P  GL +   +     +   +I L  G+I+    
Sbjct: 245 LAAYRASFDASAAQLSPWHLEYRVQLPMQGLRWRQGDARPQRLPDGSI-LWHGFITDVTE 303

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQI 142
           ++   +   + +L+ ID L+GL N   F++ + +    L        +++  D+D+FK I
Sbjct: 304 RKRIEA--ELQELATIDSLTGLPNRRHFMAQIETRLASLQSGRGAATALMMCDLDHFKSI 361

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH VGD+V+      L          GRLGGEEF     G+  + A  +A  +++ 
Sbjct: 362 NDRWGHGVGDRVLRHFGSILRAHLRPGDMAGRLGGEEFGILLDGADMRGAVGVARQIQQR 421

Query: 203 IENSQINISSGPSIHITISAGI-----AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           I    + I     I +T+S GI     A+   + P+S    R+D ALY AKKSGRNR+
Sbjct: 422 IAEYPL-IEHEQRIDLTVSIGIALMTAADANAEAPLS----RSDLALYRAKKSGRNRI 474


>gi|148265917|ref|YP_001232623.1| diguanylate cyclase [Geobacter uraniireducens Rf4]
 gi|146399417|gb|ABQ28050.1| diguanylate cyclase [Geobacter uraniireducens Rf4]
          Length = 380

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 86/174 (49%), Gaps = 12/174 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIV-----FFDIDYFKQINDNFGHP 149
           + Y+++ +L+  D L+GL N   F   LG   E+  ++       D+D FKQ+ND FGH 
Sbjct: 177 LEYSKVKELAMRDSLTGLFNRRVFDEMLGLEGERQKLMPLSLLLIDLDDFKQVNDTFGHS 236

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+A     L         V R GGEEFA     +   +A  +A  LR     +   
Sbjct: 237 AGDQVLATFGRILRESCRGADLVARYGGEEFAVVLPTTPSSKAFEIAQRLRIRFAATAFA 296

Query: 210 ISSGPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRVVCFS 259
              G    +T S GIA  C  +    P+S ++ RAD ALY AKK G+NR+  +S
Sbjct: 297 F-EGRHFKLTASIGIA--CTFDTSSVPVSDLVQRADNALYRAKKEGKNRISVYS 347


>gi|23014416|ref|ZP_00054233.1| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 317

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 81/171 (47%), Gaps = 11/171 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH----SAFISSLGS---YNEKLSIVFFDIDYFKQIND 144
           EL +    + ++S  D L+GL N      AF   L     Y E +S++  D+D+FK IND
Sbjct: 149 ELALKSVALEKVSITDALTGLFNRRRLDEAFAHELDRAQRYAEPVSLIISDVDHFKSIND 208

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+V+  ++D L         VGR GGEEF      +  + A  LA  LR  I 
Sbjct: 209 VHGHQTGDEVLQSIADLLRNGVRALDVVGRWGGEEFLIICPNTDLEGAVALAEKLRLTIA 268

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +    +       T S G+A+    E     + RAD ALY AK  GRNRV
Sbjct: 269 TAVFTGTGA----CTASFGVAQYAESESFKDTVARADTALYRAKVEGRNRV 315


>gi|330873727|gb|EGH07876.1| response regulator, putative/diguanylate cyclase [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 387

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 10/157 (6%)

Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +      S  S  E   + F   DID+FK++ND+ GHP+GD+VI  L+
Sbjct: 215 DSLTGLYNHTHILQLLEDCSFRSRREGKPLCFAMLDIDHFKKVNDSHGHPMGDRVIKSLA 274

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L        F+GR GGEEFA     +  Q A  + +++R     ++I+  + P+ +  
Sbjct: 275 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIQSAHKVLDEIRHRF--AEIHYPAQPTDLFC 332

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T SAG+      +   ++  +AD ALY AK +GRN+V
Sbjct: 333 TFSAGVVSLGANDDSLSLASQADTALYCAKHAGRNQV 369


>gi|326794109|ref|YP_004311929.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinomonas mediterranea MMB-1]
 gi|326544873|gb|ADZ90093.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinomonas mediterranea MMB-1]
          Length = 718

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 91/174 (52%), Gaps = 17/174 (9%)

Query: 96  SYNRISQLSRIDCLSGLLNHSA----FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +  ++  L++ D L+ L N ++    F   +    ++++++F D+D FK +ND  GH +G
Sbjct: 279 TQQQVEWLAKHDSLTQLPNRASLFDFFQKCIDHGTDRMALLFVDLDRFKNVNDTLGHRIG 338

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI------IEN 205
           D+++  ++ +++        V R GG+EF      +SE +A  +A DLR        +E 
Sbjct: 339 DQLLVAVAKRMLSTIAEGSCVVRQGGDEFIILLPNTSESDAQKVATDLRMALSKRFQLEQ 398

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            Q+ I+  PSI I++            + T+  RAD A+Y AK+SGRNR   F+
Sbjct: 399 HQLIIT--PSIGISLYPKDGRD-----LDTLYKRADTAMYRAKQSGRNRFAMFT 445


>gi|307822562|ref|ZP_07652793.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
 gi|307736166|gb|EFO07012.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
          Length = 448

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 85/173 (49%), Gaps = 15/173 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +LS  D L+ L N   F        + +  YN  LS +  DID+FK+IND F H  GD
Sbjct: 275 LKELSIRDELTQLYNRRYFNEQAIKLFAQMKRYNHSLSFMIGDIDHFKRINDRFSHATGD 334

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN---SQIN 209
           +V+  +S  L         V R GGEEF      +   +AA     LRK+IE    S I+
Sbjct: 335 EVLKAVSGILKNSTRASDIVARYGGEEFVVIFPETPLMQAAAQCERLRKLIEGFPWSTIH 394

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
               P + +T+S G+++    E    I+  AD  LY AK  GRNR +C + +E
Sbjct: 395 ----PDLQVTMSMGLSDDLSLERFEHILAAADNNLYRAKADGRNR-LCSAALE 442


>gi|304312539|ref|YP_003812137.1| hypothetical protein HDN1F_29110 [gamma proteobacterium HdN1]
 gi|301798272|emb|CBL46494.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 382

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 94/187 (50%), Gaps = 15/187 (8%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKL--SIVFFD 135
           GYI     +  F+    +S L++ D L+G+ N  A    L      ++ E++  S++  D
Sbjct: 194 GYIIEFNSRRSFLQRGMMSALAQTDALTGIYNRGAINHKLERIFNYAHREQIAVSLLLAD 253

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAI 194
           IDYFK+ ND +GH  GD+ I  ++         P+ F GR GGEEF    L +S  EAA 
Sbjct: 254 IDYFKRYNDLYGHLEGDRCIQAVASAFAASCRRPLDFAGRYGGEEFVLVWLNTSATEAAS 313

Query: 195 LANDLRKIIENSQI-NISSGPSIHITISAGIAE----RCHKEPISTIIYRADQALYVAKK 249
           L + + + I +  I +  S  S  +TIS G+      + H    +  +  AD  LY AK 
Sbjct: 314 LRDGVEQRIRSLHITHKGSDVSSEVTISGGLVTGYPGKSHTP--ADFLKAADDGLYKAKA 371

Query: 250 SGRNRVV 256
           +GRN++V
Sbjct: 372 AGRNQIV 378


>gi|289627374|ref|ZP_06460328.1| response regulator, putative/diguanylate cyclase, putative
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289647851|ref|ZP_06479194.1| response regulator, putative/diguanylate cyclase, putative
           [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330867160|gb|EGH01869.1| response regulator, putative/diguanylate cyclase [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330871048|gb|EGH05757.1| response regulator, putative/diguanylate cyclase [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 551

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 10/157 (6%)

Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +      S  S  E   + F   DID+FK++ND+ GHP+GD+VI  L+
Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRREGKPLCFAMLDIDHFKKVNDSHGHPMGDRVIKSLA 438

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L        F+GR GGEEFA     +  Q A  + +++R     ++I+  + P+ +  
Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIQSAHKVLDEIRHRF--AEIHYPAQPTDLFC 496

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T SAG+      +   ++  +AD ALY AK +GRN+V
Sbjct: 497 TFSAGVVSLGANDDSLSLASQADTALYCAKHAGRNQV 533


>gi|254411539|ref|ZP_05025316.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196182040|gb|EDX77027.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 505

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 106/203 (52%), Gaps = 14/203 (6%)

Query: 78  ISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------ 129
           I+  LG +   I  E  LF +  ++  L  ID L+G+ N   F   +    ++L      
Sbjct: 299 IAAQLGTLMQRIKVETALFEANQKLKYLVTIDGLTGIANRRKFDQYIHREWQRLFREQLP 358

Query: 130 -SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187
            S++  DID+FK+ ND +GH  GD  +  ++ ++ ++   P   V R GGEEFA     +
Sbjct: 359 LSLILGDIDFFKRYNDTYGHQAGDDCLRNVATKIRLLVKRPADLVARYGGEEFAVILPNT 418

Query: 188 SEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIST--IIYRADQAL 244
           + + A  +A  +R+ +E  +I +  S  S ++T+S G++       ++   +I +ADQAL
Sbjct: 419 NAKGAIHVAETIRQGVETLKIPHGGSESSKYVTLSLGVSSLIPNSLVNVEGLINQADQAL 478

Query: 245 YVAKKSGRNRVVC-FSDIENNTC 266
           Y AK  GRN+ V  +S  EN+ C
Sbjct: 479 YRAKAGGRNQTVAEYSIPENSYC 501


>gi|113970628|ref|YP_734421.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113885312|gb|ABI39364.1| diguanylate cyclase [Shewanella sp. MR-4]
          Length = 467

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 78/156 (50%), Gaps = 4/156 (2%)

Query: 107 DCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D LSGLLN   F+  L + N    + S+   D+D FK IND +GH VGD+VI  L+  + 
Sbjct: 312 DPLSGLLNRRGFMPQLTNLNGPTARYSVAMLDLDNFKMINDTYGHSVGDRVIQLLAQLIH 371

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
               +     RLGGEEFA        ++   +   +RK      I  +   +I+ T+S G
Sbjct: 372 NHSRSQDIAARLGGEEFALVLRDIDAEQVYPVLERIRKSFAEMSIA-AEEHTIYCTVSIG 430

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             E        ++++ AD+ALY AK  G+N +V + 
Sbjct: 431 WVEYQQGIAGESLLHLADKALYQAKAQGKNTIVKYQ 466


>gi|332524913|ref|ZP_08401099.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2]
 gi|332108208|gb|EGJ09432.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2]
          Length = 480

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 14/164 (8%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GLLN  AF   L    E++       ++  D+D+FK++ND  GH VGD+++   ++
Sbjct: 108 DTLTGLLNRRAFGQRLRKALEEMLPGEVRGLLRLDLDHFKRLNDECGHAVGDQLLRSAAE 167

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---SSGPSIH 217
            L         +GR+GG+EF    L  +  +   L ND R ++      I   S+G S+ 
Sbjct: 168 SLAAGSSPEDAIGRVGGDEF---VLLLTRYDLQTLLNDARALLRRLSAPIEVPSTGHSLV 224

Query: 218 ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +T SAG+   R H   +  ++ +AD A+Y AK +GR+R++CF +
Sbjct: 225 LTASAGLTVLRPHLSEVE-VMRQADAAMYEAKGAGRDRLMCFEN 267



 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 16/162 (9%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI---A 156
           D L+G  N   F   L             L++   DID F  IN  +G P GD V+   A
Sbjct: 317 DALTGTHNRRYFDERLAREVTQAQRSGRPLALALLDIDNFHGINAGYGWPSGDIVLREFA 376

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            L+   V +     ++ R GGEEF      +  + A  +   +R  +  +    + G SI
Sbjct: 377 ALAGGNVRLVD---WLARYGGEEFCIVLPDTPVEAALAVMERIRVAVAAATFVATDGRSI 433

Query: 217 HITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256
            +T+S G+A    ++  P++ +I RA +A   AK +G+NRVV
Sbjct: 434 GVTVSIGLAMLSAEDGAPVA-LIDRAGRACLSAKAAGKNRVV 474


>gi|298486489|ref|ZP_07004549.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298158966|gb|EFI00027.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 636

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 29/214 (13%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--- 115
           +G   +L  ++  + ++ T  LL+   +   + +L  +  ++  L+  D L+GL N    
Sbjct: 152 HGAPLVLDISVEFITLNNTACLLM---NARDIGQLKTAQAQVQHLAYHDPLTGLPNRALL 208

Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
               S  +S L   N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         
Sbjct: 209 MDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 268

Query: 172 VGRLGGEEFAAAALG------SSEQEAAILANDLRKIIENSQI----NISSGPSIHITI- 220
           V RLGG+EF     G         Q+  +LA++LR+++          +   PSI I + 
Sbjct: 269 VARLGGDEFVVLICGLDGTRDEVTQQVRVLADNLRELLAEPMFLDGHRLQVTPSIGIVLI 328

Query: 221 -SAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
              G+A        + ++ RAD ALY AK SGRN
Sbjct: 329 PDDGLAP-------ADLLKRADIALYRAKDSGRN 355


>gi|123440952|ref|YP_001004941.1| hypothetical protein YE0586 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087913|emb|CAL10701.1| putative exported protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 407

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 11/171 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQIND 144
           K L    + ++  +  D L+GL N + F   L         NE ++++F D D FK+IND
Sbjct: 212 KHLTQENDSLAHRAAHDSLTGLANRAYFEGRLSRTLSDCKTNEHVAVLFLDGDRFKEIND 271

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKI 202
           N+GH  GD V+  ++D+L  +      V RLGG+EFA   A + +++ +  I+AN++ K 
Sbjct: 272 NYGHAAGDVVLTTIADRLRALLRESDLVARLGGDEFAILLAPIYNTD-DVLIIANNIIKS 330

Query: 203 IENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252
           +    I +  G  I  ++S G+A    H +    ++ RAD+A+Y AKK  R
Sbjct: 331 M-TQPITLPDGSEIISSLSIGVAIYPDHAQTPDELLQRADEAMYQAKKGFR 380


>gi|152994238|ref|YP_001339073.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150835162|gb|ABR69138.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 356

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 82/161 (50%), Gaps = 19/161 (11%)

Query: 106 IDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+ +LN           N       +  +I+  DID+FKQ+ND  GH  GDKV++ +
Sbjct: 199 VDLLTRVLNRRGIEKVFNELNLDSTEQKKNYAILIIDIDHFKQVNDIHGHLTGDKVLSSI 258

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217
           + +L         +GR GGEEF    L  + ++   LA +LR  + N  I NIS+     
Sbjct: 259 AGKLSRTVHPNDVLGRWGGEEFIVLTLNRTPKQVMALAENLRTAVSNLIIGNISN----- 313

Query: 218 ITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           IT+S GI    E   KE +  I   AD  LY+AK+SGRN +
Sbjct: 314 ITVSIGIGYSYEASSKEAVFKI---ADSHLYIAKQSGRNTI 351


>gi|51245833|ref|YP_065717.1| methyl-accepting chemotaxis protein [Desulfotalea psychrophila
           LSv54]
 gi|50876870|emb|CAG36710.1| related to methyl-accepting chemotaxis protein [Desulfotalea
           psychrophila LSv54]
          Length = 387

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 105/226 (46%), Gaps = 30/226 (13%)

Query: 32  SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK 91
           ++F+++F A+ IFI   F+ +I  T F  + Y L +   L I     +L        IL 
Sbjct: 188 NVFWTVFKASGIFIT-CFILFIAATTFM-VNYFLRQLGELAIKDTLTNLYTKRFLEEILP 245

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            +    +R +Q                          L ++F DID+FK++ND++GH  G
Sbjct: 246 NVLKKLHRDNQ------------------------HLLVVIFIDIDHFKKVNDSYGHSCG 281

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  L++ L+       F  R GGEEF       +EQEA  +   +RK  E + +   
Sbjct: 282 DLVLKRLANILMDNTRPDDFSIRFGGEEFLLIGFFRNEQEAIAVTERIRK--ETACLVFE 339

Query: 212 SGPS-IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              S   IT+SAGIA  +   E     + RAD+ LY AK SGRNR+
Sbjct: 340 DNNSKFQITLSAGIAIYQPDTESFEGTLKRADKKLYEAKDSGRNRI 385


>gi|238788547|ref|ZP_04632340.1| Diguanylate cyclase [Yersinia frederiksenii ATCC 33641]
 gi|238723460|gb|EEQ15107.1| Diguanylate cyclase [Yersinia frederiksenii ATCC 33641]
          Length = 378

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 3/154 (1%)

Query: 106 IDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           ID L+ L N ++    + ++ +  +   ++  D+D+FK +ND +GH  GD ++  +   L
Sbjct: 202 IDKLTQLNNRASVDYRLKAIHNRRQACGLMILDLDHFKSVNDTYGHNGGDVLLTAVGKLL 261

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
           +       FVGR GGEEF         Q   ++A  +R+ +E+  + +  G  I +TIS 
Sbjct: 262 MTTVRDEDFVGRYGGEEFIIITHRHEPQAIKVVAERIRQRVEDLTVEVPDGRKIKVTISI 321

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G +       +   +   D+ALY AK  GRN+VV
Sbjct: 322 GASLYLPGMSMLKALKMTDEALYQAKNQGRNQVV 355


>gi|313111572|ref|ZP_07797371.1| putative GGDEF domain-containing protein [Pseudomonas aeruginosa
           39016]
 gi|310883873|gb|EFQ42467.1| putative GGDEF domain-containing protein [Pseudomonas aeruginosa
           39016]
          Length = 671

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 79/161 (49%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q +  D L+GL N +A    L     +       L +   DID+FK+IND+FGH  GDKV
Sbjct: 509 QKALTDPLTGLPNRAALSERLEQEVARRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDKV 568

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++ +L        F+ R GGEEF      +S +    L   LR  I     +    P
Sbjct: 569 LKIIAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHFKGEP 628

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT SAGI      E    +  RADQALY AK++GR+R+
Sbjct: 629 -LSITCSAGITAFEGNEAGEVVFERADQALYRAKRAGRDRL 668


>gi|300822275|ref|ZP_07102416.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
 gi|300525158|gb|EFK46227.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
          Length = 436

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 243 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 302

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 303 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 362

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            +AA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 363 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 422

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 423 KQAGRNRV 430


>gi|284043916|ref|YP_003394256.1| diguanylate cyclase [Conexibacter woesei DSM 14684]
 gi|283948137|gb|ADB50881.1| diguanylate cyclase [Conexibacter woesei DSM 14684]
          Length = 351

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 94/218 (43%), Gaps = 21/218 (9%)

Query: 48  IFLFYIGLT--PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR 105
           I L  IG    P  G   + +  LS  ++ + +  LL     ++   L +++  + +L  
Sbjct: 134 IPLVAIGAPEYPPTGWRSVPLLVLSCALVGVAVQELLAR-ERAVAGRLQLAHAELERLVE 192

Query: 106 IDCLSGLLN-------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+GL N       H   I+        L++   D+D FK  ND  GHP GD ++  +
Sbjct: 193 TDPLTGLPNRRAIETTHRREIAVALRTGRPLTLAIIDLDRFKAYNDAHGHPAGDALLRTV 252

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           SD+          + R GGEEF     G     A  L  +LR  + ++Q           
Sbjct: 253 SDEWSRRLRASDVLTRWGGEEFLLLLPGCDADAADSLVEELRAAVPHAQ----------- 301

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T SAG+A          +I RAD ALY AK+ GR+R V
Sbjct: 302 TFSAGVAPWQPGMTGDQLIARADAALYRAKREGRDRTV 339


>gi|188582502|ref|YP_001925947.1| diguanylate cyclase [Methylobacterium populi BJ001]
 gi|179346000|gb|ACB81412.1| diguanylate cyclase [Methylobacterium populi BJ001]
          Length = 360

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 88/188 (46%), Gaps = 26/188 (13%)

Query: 91  KELFISYNRISQLSR----------IDCLSGLLNHSAF--------ISSLGSYNEKLSIV 132
           ++L +S   I +L R           D L+GL N  AF          +         ++
Sbjct: 167 EQLSVSAGHIDRLHRDLVEAQRAAVTDTLTGLANRKAFDQFLRDAITRTRADSGSTFCLI 226

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA----AAALGSS 188
             DID+FK +ND  GH  GD+V+  L+  L           R GGEEFA     A +G+ 
Sbjct: 227 MLDIDHFKGLNDRHGHRFGDQVLRLLARLLSEKTTDRDLAARYGGEEFAIVLGEAGIGAG 286

Query: 189 EQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVA 247
              A ++ + LR       +   SG  +  +TISAG+A+    E    +I RAD+ALY A
Sbjct: 287 VALAQLVCDRLRG---QRLVKRGSGEVVAQVTISAGVAQYRPGEAARDVIERADRALYEA 343

Query: 248 KKSGRNRV 255
           K++GR+RV
Sbjct: 344 KRTGRDRV 351


>gi|109898091|ref|YP_661346.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109700372|gb|ABG40292.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
          Length = 362

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 83/170 (48%), Gaps = 24/170 (14%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+ + +  A +  + +   K  +V  DIDYFK+ ND +GH VGD+V+  ++ +L  V 
Sbjct: 185 DELTSIPSRRALMQYVNTLGRKYVVVMADIDYFKKFNDTYGHDVGDEVLRLVASRLNKVG 244

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---------------- 210
           G      R GGEEF       S Q+A      +R++I +  I +                
Sbjct: 245 GGGK-AFRFGGEEFILIFPRKSPQQALPFVEQIRQMIADYPIALRDKPRPKKRPKAAAGK 303

Query: 211 ------SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
                 S G ++ IT S G+A+R  +    S I+ +AD ALY AKK+GRN
Sbjct: 304 GSTSKNSQGKTVKITASFGVAKRSSQFSQFSDIMKQADIALYAAKKAGRN 353


>gi|94501116|ref|ZP_01307639.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Oceanobacter sp. RED65]
 gi|94426692|gb|EAT11677.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Oceanobacter sp. RED65]
          Length = 308

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 21/175 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
           N++  ++ ID L+ L N + F+  L         Y  KL++   D+D FKQ+ND  GH  
Sbjct: 130 NKLQNMALIDPLTLLSNRADFMQKLEHHLEYSLRYQTKLALCMVDLDGFKQVNDTLGHRA 189

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA--NDLRKIIE---- 204
           GD+V+   S +L         + RLGG+EF    LG  ++E+++ A    ++ + E    
Sbjct: 190 GDQVLQQFSTRLKQRLRKSDVLARLGGDEFVILMLGVGDEESSMQAAKEKMQAVAEPFLI 249

Query: 205 --NSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             + Q+ +I  G SI I IS G      K     +++ ADQA+Y  KKSG+N + 
Sbjct: 250 YMDGQVHDIQLGMSIGICISGGTISTPDK-----LLHCADQAMYQVKKSGKNNIA 299


>gi|330811572|ref|YP_004356034.1| diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379680|gb|AEA71030.1| Putative diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 498

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 12/167 (7%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +QL+ +D L+GL N      +L           + LS++  D D+FK  ND  GH  GD+
Sbjct: 332 AQLASVDSLTGLANRRTLDETLQQEWLRAQRSGQPLSVLMIDADHFKAFNDRHGHQRGDE 391

Query: 154 VIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            +  L+  +      P     R GGEEF+     ++   A  +A ++R+ +E   + ++ 
Sbjct: 392 ALRTLAQLISKHVRRPADLAARYGGEEFSVVLPETTTAGAFTMAQNIREAVEQ-LLPVAE 450

Query: 213 GPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
           G +  +T+S GIA   +     +  +++ AD+ALY AK SGRNRVVC
Sbjct: 451 GEA-PMTVSIGIATWVNGPYGELQQLLFAADKALYQAKSSGRNRVVC 496


>gi|288561713|ref|YP_003429119.1| diguanylate cyclase [Bacillus pseudofirmus OF4]
 gi|288548345|gb|ADC52227.1| diguanylate cyclase [Bacillus pseudofirmus OF4]
          Length = 334

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 14/160 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           I++ S ID L+ L N   F   L   +  E +S++F DID FK +ND  GH  GD+V+  
Sbjct: 186 ITKSSVIDPLTKLYNRRYFNQQLDKMAVKEPVSMIFMDIDDFKALNDTKGHEEGDRVLKE 245

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           ++D    +      VGR GGEE  AA     ++E   LA  +R+ IE             
Sbjct: 246 VADITKNIVQAHGIVGRYGGEEIVAAVKEDRQEE---LAERIRQTIEEKT---------G 293

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +T+S G++       +  ++  AD+ +Y AK +G+N+VV 
Sbjct: 294 VTVSIGVSSLREGMSVRDLVVSADENMYQAKTTGKNKVVS 333


>gi|120613350|ref|YP_973028.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
 gi|120591814|gb|ABM35254.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
          Length = 428

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 102/217 (47%), Gaps = 17/217 (7%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYIS---------GSILKELFISYNRISQLS 104
           G  P+  +E  L  N    +++   +L  G++          G  L++L    ++  + +
Sbjct: 123 GKLPYRTIETSL--NDGRWVLTTETTLPGGWMLCVVTDVSELGIELRDLRQERDKAMKSA 180

Query: 105 RIDCLSGLLNHSAFI----SSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
             D L+GL N    +      LG    + +++   DID+FK +ND FGH  GD V+   +
Sbjct: 181 LSDELTGLSNRRYAMDFLQQKLGPNKAQAMAVAVIDIDHFKAVNDRFGHAGGDLVLRDFA 240

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +L    G    V R+GGEEF     G+    A  +   L   ++ +   +   P    +
Sbjct: 241 ARLAETAGRDDVVARIGGEEFLLVLQGARTVGADSVLRQLGDSLDTASP-LPEAPEFRYS 299

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            SAG+A     E +  ++ RAD+ALY AK++GRNRVV
Sbjct: 300 CSAGVALARPGETVGEVLRRADEALYQAKRAGRNRVV 336


>gi|326795863|ref|YP_004313683.1| diguanylate cyclase with extracellular sensor [Marinomonas
           mediterranea MMB-1]
 gi|326546627|gb|ADZ91847.1| diguanylate cyclase with extracellular sensor [Marinomonas
           mediterranea MMB-1]
          Length = 734

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 79/174 (45%), Gaps = 17/174 (9%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           E+  +   +  L   D L+GL N       +         Y   L ++  DID+FK +ND
Sbjct: 551 EMHAAKQELELLVSQDYLTGLFNRKKLDELMARECIESKHYGRPLGVIMIDIDHFKDVND 610

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGD VI  ++  L         VGR GGEEF      +   E    A  +R  + 
Sbjct: 611 TYGHSVGDDVIGCIARLLKQHARPSDKVGRWGGEEFMVLCPNTPPDELIAFAEMIRAQVS 670

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTII---YRADQALYVAKKSGRNRV 255
           +  I I        TIS G+A     EP  T++    RAD ALYVAK +GRNRV
Sbjct: 671 SYDITIVGTK----TISLGLAVL---EPFETVVELHKRADNALYVAKNNGRNRV 717


>gi|83648383|ref|YP_436818.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83636426|gb|ABC32393.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 553

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 9/164 (5%)

Query: 103 LSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LSR D L+GLLNH       S  +S        L+ V  D+D+FK++ND +GH +GD+V+
Sbjct: 387 LSR-DGLTGLLNHISAEEYLSQQLSRARRMGSSLAYVMVDLDHFKRVNDQYGHLMGDRVL 445

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +  L         +GR GGEEF      ++++ A  +   +R        N    P 
Sbjct: 446 VNFARYLQGRLRRSDVIGRYGGEEFVVILPDTTKEHARFVIESMRMSFATINHNTEEDP- 504

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +T SAGIA     + ++ +   AD ALY AK+ GRN+V  ++
Sbjct: 505 LQVTFSAGIAAFPDIDDMTMLSKAADDALYDAKQQGRNKVCIYN 548


>gi|74317971|ref|YP_315711.1| diguanylate cyclase [Thiobacillus denitrificans ATCC 25259]
 gi|74057466|gb|AAZ97906.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 454

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 12/166 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFIS--------SLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           R+ +++  D L+G+ N + F           L    +  S++ FDID FKQIND +GH  
Sbjct: 279 RLERMATTDALTGIANRARFEELLQLEQQHCLRVPGQPFSVILFDIDRFKQINDTWGHGQ 338

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  ++ ++  +  T   + R GGEEFA     +    A ++A+ +   +   Q+ +
Sbjct: 339 GDDVLKTIAREVQGLLRTADTLARWGGEEFAVLLPRTDLDAARVVADKICGAL--GQVPL 396

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               +  +T S G+A     EP + ++ RAD ALY AK+ GRN+VV
Sbjct: 397 ERVGT--VTASFGVATIESGEPGAALLARADGALYEAKRRGRNQVV 440


>gi|114561940|ref|YP_749453.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114333233|gb|ABI70615.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 404

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 73/149 (48%), Gaps = 8/149 (5%)

Query: 112 LLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
           L NH      +S        +S+   DID+FKQINDN GH +GDKV+  L+  L      
Sbjct: 260 LTNHQTTQDLLSKQAVTQYPISVAIIDIDHFKQINDNHGHLIGDKVLCQLAQLLQNQMRN 319

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
              + R GGEEF      ++  +A  L   LR  I    I       + +TIS G+A+  
Sbjct: 320 DDLLARWGGEEFVVVLPNTTLADAIELTERLRLYIAMQNIK-----GMELTISLGVAQYR 374

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVC 257
            ++   +++ RAD+ALY AK  GRN V  
Sbjct: 375 LEDSAHSLLDRADKALYSAKSGGRNCVAA 403


>gi|296392352|ref|ZP_06881827.1| GGDEF domain-containing protein [Pseudomonas aeruginosa PAb1]
          Length = 671

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 79/161 (49%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q +  D L+GL N +A    L     +       L +   DID+FK+IND+FGH  GDKV
Sbjct: 509 QKALTDPLTGLPNRAALSERLEQEVARRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDKV 568

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++ +L        F+ R GGEEF      +S +    L   LR  I     +    P
Sbjct: 569 LKIIAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHFKGEP 628

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT SAGI      E    +  RADQALY AK++GR+R+
Sbjct: 629 -LSITCSAGITAFEGNEAGEVVFERADQALYRAKRAGRDRL 668


>gi|257483365|ref|ZP_05637406.1| response regulator, putative/diguanylate cyclase, putative
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331012580|gb|EGH92636.1| response regulator, putative/diguanylate cyclase [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 551

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 10/157 (6%)

Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +      S  S  E   + F   DID+FK++ND+ GHP+GD+VI  L+
Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRREGKPLCFAMLDIDHFKKVNDSHGHPMGDRVIKSLA 438

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L        F+GR GGEEFA     +  Q A  + +++R     ++I+  + P+ +  
Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIQSAHKVLDEIRHRF--AEIHYPAQPTDLFC 496

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T SAG+      +   ++  +AD ALY AK +GRN+V
Sbjct: 497 TFSAGVVSLGANDDSLSLASQADTALYCAKHAGRNQV 533


>gi|240142683|ref|YP_002967196.1| putative GGDEF family protein [Methylobacterium extorquens AM1]
 gi|240012630|gb|ACS43855.1| putative GGDEF family protein [Methylobacterium extorquens AM1]
          Length = 359

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 3/176 (1%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKLSIVFFDIDYFKQINDNFGH 148
           ++EL      +   + +D L+GLLN     + L +      +++  DID+FK IND FGH
Sbjct: 179 MEELRREIEALRTETTLDVLTGLLNRRGLDARLNAMAGSPYTLLMLDIDHFKGINDRFGH 238

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ- 207
           P GD VI  +   +         V R+GGEEFA     + E  A I+A  +R  +   + 
Sbjct: 239 PAGDSVIRSVGAVIRHCVRDDDVVARMGGEEFAVILPATGEDAAEIVAARIRANVAARRF 298

Query: 208 INISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +   +G  I  +T+S G A     E   +++ RADQALY +K+ GR+RV  F+  E
Sbjct: 299 VKRQTGEPIGVVTVSVGGASSGSGEGGESVLERADQALYASKRGGRDRVTFFNRKE 354


>gi|85716223|ref|ZP_01047197.1| two component diguanylate cyclase [Nitrobacter sp. Nb-311A]
 gi|85696895|gb|EAQ34779.1| two component diguanylate cyclase [Nitrobacter sp. Nb-311A]
          Length = 457

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 83/166 (50%), Gaps = 11/166 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N     S L +  E+       L+++  DIDYFK IND++GH  GD V
Sbjct: 290 EMAVTDGLTGLHNRRYMESHLATLAEQASLRGKPLALMMLDIDYFKSINDSYGHDAGDDV 349

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG- 213
           +   + ++           R GGEEF      +    A  +A  LR+ I     ++  G 
Sbjct: 350 LREFALRIRKAIRGIDLACRYGGEEFVVVMPETDLHVAGRVAERLRRAIAGETFSVHKGT 409

Query: 214 PSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             + +TIS G++  ER   E +S  + RAD ALY AK  GRNRVV 
Sbjct: 410 KRLKVTISIGLSILER-KGESVSDALKRADVALYRAKHDGRNRVVA 454


>gi|330447645|ref|ZP_08311293.1| putative diguanylate cyclase YcdT domain protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491836|dbj|GAA05790.1| putative diguanylate cyclase YcdT domain protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 408

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/202 (37%), Positives = 100/202 (49%), Gaps = 19/202 (9%)

Query: 57  PFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH 115
           P Y L YI V   SL+I   IT++L L Y   S +  L     R+  +++  C       
Sbjct: 222 PIY-LNYIDVIKFSLLISFLITVTLFLLYRLSSNVMNLI----RLDNMTK--CFRRDYGE 274

Query: 116 SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
           + F + L S     S+  FDID+FK IND +GH VGD+VI   ++ +         + R 
Sbjct: 275 NKFKNKLIS---NKSVFIFDIDHFKNINDTYGHDVGDQVICTTAEIIKRNIRKSAQLYRW 331

Query: 176 GGEEFAAAALGSSEQEAAIL-ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
           GGEEF    L  SE +AA+  A  LRK IE       +   I+ TIS G     H   + 
Sbjct: 332 GGEEF-VLILNISEPDAALRKAEQLRKAIE-----AQTELDINFTISIGCT-LAHNMTLD 384

Query: 235 TIIYRADQALYVAKKSGRNRVV 256
             I  ADQALY AK +GRN+VV
Sbjct: 385 ESIKVADQALYTAKNNGRNQVV 406


>gi|313632651|gb|EFR99632.1| ggdef domain-containing protein [Listeria seeligeri FSL N1-067]
          Length = 375

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 114/235 (48%), Gaps = 21/235 (8%)

Query: 35  FSIFIATVI--FIANIFLF---YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
           FS FIA +I  F A ++ F   + G     G E  +VE L L   S    LL+ Y    I
Sbjct: 140 FSKFIALLILSFPAQLYYFINNFDGGHILQGFE--IVEYLFL---SFATGLLVFYACNYI 194

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQI 142
            K   +    +++ +  D L+ L N   F          S  +K  LS+   DID+FK+I
Sbjct: 195 DKSNLV-IQTLTETAMTDSLTNLPNMRFFTQQFAWIFNKSLKKKAPLSLFIIDIDHFKEI 253

Query: 143 NDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND  GH  G+ V+A  S  L    F       R+GGEEFA         +AA++A+ +R+
Sbjct: 254 NDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVDATQAALIADHIRE 313

Query: 202 IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            IE ++   +   S  +TIS G+A   C      ++   ADQALY AK+SGRN++
Sbjct: 314 EIERAKFPYTP-TSGQVTISIGVATANCSFSTTESLFEAADQALYQAKQSGRNQI 367


>gi|289626963|ref|ZP_06459917.1| sensory box protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289650793|ref|ZP_06482136.1| sensory box protein [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 721

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 29/214 (13%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--- 115
           +G   +L  ++  + ++ T  LL+   +   + +L  +  ++  L+  D L+GL N    
Sbjct: 237 HGAPLVLDISVEFITLNNTACLLM---NARDIGQLKTAQAQVQHLAYHDPLTGLPNRALL 293

Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
               S  +S L   N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         
Sbjct: 294 MDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 353

Query: 172 VGRLGGEEFAAAALG------SSEQEAAILANDLRKIIENSQI----NISSGPSIHITI- 220
           V RLGG+EF     G         Q+  +LA++LR+++          +   PSI I + 
Sbjct: 354 VARLGGDEFVVLICGLDGTRDEVTQQVRVLADNLRELLAEPMFLDGHRLQVTPSIGIVLI 413

Query: 221 -SAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
              G+A        + ++ RAD ALY AK SGRN
Sbjct: 414 PDDGLAP-------ADLLKRADIALYRAKDSGRN 440


>gi|261409979|ref|YP_003246220.1| PAS/PAC sensor-containing diguanylate cyclase [Paenibacillus sp.
           Y412MC10]
 gi|261286442|gb|ACX68413.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus sp.
           Y412MC10]
          Length = 331

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 12/167 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG----SYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
           +LS  D L+GL N   F   L      YN     LS+   DID+FK++ND +GH  GD+V
Sbjct: 163 ELSNTDKLTGLKNRRFFQERLEEQLMQYNHNRIPLSLFIIDIDHFKRVNDTWGHGYGDEV 222

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  L         V R GGEEF      +  ++A   A  LR+ +++      S  
Sbjct: 223 LFDVATILKTHALEGETVARYGGEEFVMILPETDAEKAKAGAERLRRAVQDFSWKTGS-- 280

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              +TIS GI      +  +T++ +AD+ALY +K++GRN+V  + D+
Sbjct: 281 ---MTISIGIITANPDDNEATLLQKADEALYASKQNGRNQVTHYDDL 324


>gi|239996173|ref|ZP_04716697.1| hypothetical FOG: GGDEF domain protein [Alteromonas macleodii ATCC
           27126]
          Length = 320

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 87/186 (46%), Gaps = 23/186 (12%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-----------------GSYNEKLSIVF 133
           +EL  +Y  + ++S  D L+GL N     S L                 G   + L  + 
Sbjct: 87  QELERAYKTLEEVSLRDPLTGLYNRHYLESQLPGEIRRSQFSAKQSPSTGKTKQDLLCLL 146

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK+IND++GH  GDKV++  ++ L  VF     + R GGEEF      S+ +E  
Sbjct: 147 IDIDHFKRINDDYGHIAGDKVLSAFANVLKEVFRQTDLIIRWGGEEFLVVCRQSTREELP 206

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRA----DQALYVA 247
            +A   R+++ N+  +I     I+IT S G +      +E   T   R     D ALY  
Sbjct: 207 EVAERCREMVANTPFDIGLEKPINITCSIGFSLLPPDREEDFDTAWKRTFAVIDYALYAT 266

Query: 248 KKSGRN 253
           K SGRN
Sbjct: 267 KLSGRN 272


>gi|289208548|ref|YP_003460614.1| response regulator receiver modulated diguanylate cyclase
           [Thioalkalivibrio sp. K90mix]
 gi|288944179|gb|ADC71878.1| response regulator receiver modulated diguanylate cyclase
           [Thioalkalivibrio sp. K90mix]
          Length = 436

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 97/190 (51%), Gaps = 20/190 (10%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQ 141
           +++E+ +   +  +++ +D L+GL N +A       F     S+++ L+++  D+D+FK 
Sbjct: 250 LMEEVRLQRQKHYEMAMVDPLTGLSNRNALTEFASRFFDEPCSHDQPLALILMDLDHFKD 309

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH VGD+V+A +   L  V        R GGEE      GS   +A   A DLR+
Sbjct: 310 INDRHGHLVGDEVLAAIGQLLRAVAAPGEIPVRFGGEELLMLMPGSDLFDAHTRAEDLRQ 369

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEP-----ISTIIYRADQALYVAKKSGRNRVV 256
            +++  ++ +  P   +T S G+  R   EP     ++ +   AD+A+Y AK  GRN VV
Sbjct: 370 RVQD--LHPAGLP---LTASFGVTSR---EPGSDAELNDLFRAADEAVYNAKAQGRNCVV 421

Query: 257 CFSDIENNTC 266
                 +N+ 
Sbjct: 422 SLPGKHHNSA 431


>gi|170690285|ref|ZP_02881452.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia graminis
           C4D1M]
 gi|170144720|gb|EDT12881.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia graminis
           C4D1M]
          Length = 522

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 11/173 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQ 141
           + E   S  ++  L+R D L+GL N            + S      + ++++ D+D FKQ
Sbjct: 328 VTERRQSEAKVLYLARHDSLTGLANRRELRECLDRILLRSHTRRETRTAVLYLDLDGFKQ 387

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD+V+  ++ +L        F  RLGG+EF  A +      +AI+A   R 
Sbjct: 388 VNDRHGHTAGDEVLETVAARLRQTLRHGEFAARLGGDEF--AVIVEEATLSAIVAIAQRV 445

Query: 202 IIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           I E ++   +++G +I +  S GIA     EP+ ++I RAD+A+Y AK +G+ 
Sbjct: 446 IREIAKPYALTAGGTISLGTSIGIALAEPHEPVDSLIRRADEAMYSAKNAGKG 498


>gi|119470705|ref|ZP_01613373.1| GGDEF family protein [Alteromonadales bacterium TW-7]
 gi|119446175|gb|EAW27453.1| GGDEF family protein [Alteromonadales bacterium TW-7]
          Length = 524

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 88  SILKELFISYNRISQL---SRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQ 141
           ++L  + I   +I QL   ++ D L+   N    +  +S L       +I+  DID+FK+
Sbjct: 351 AMLNGVNILQTQIGQLKHDAQTDPLTNTHNRRSLNGLLSQLMLKQTPFAILEIDIDFFKR 410

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND FGH  GD+ +  L+D +  +      V R+GGEEF         Q A  +A  LR 
Sbjct: 411 VNDTFGHDKGDEALKVLADIIKKISRKGDIVSRIGGEEFLLVLPHEDSQSALKIAERLRT 470

Query: 202 IIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +E +Q+         IT+S GIA    H   I  +   AD+ALY AK+ GRNR V 
Sbjct: 471 TVETTQMETIG----FITVSIGIATWPTHSNNIDQVYKCADKALYYAKEHGRNRCVV 523


>gi|83721143|ref|YP_443336.1| GGDEF domain-containing protein [Burkholderia thailandensis E264]
 gi|83654968|gb|ABC39031.1| GGDEF domain protein [Burkholderia thailandensis E264]
          Length = 628

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 104/234 (44%), Gaps = 22/234 (9%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL------LGYISGSILK 91
           ++A  IF A  F+        +G+   L+   S   +     L+      +    G+ L+
Sbjct: 402 WLAHAIFAAGFFMLS------FGVVQALITTRSFATVYSQQDLMARLAESMARTEGA-LQ 454

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL  +  ++  L+  D L+G  N   FI  + +            S++  D+D FK IND
Sbjct: 455 ELKRTNQKLEHLATTDPLTGASNRRKFIEQMQAEIARAKRDGTAFSLLALDLDNFKTIND 514

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH VGD V+     Q +        + R+GGEEF           A+ +A  +R  I 
Sbjct: 515 NYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRTTIA 574

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           N+   I  G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV 
Sbjct: 575 NASFGI-DGTHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 627


>gi|26990419|ref|NP_745844.1| sensory box protein [Pseudomonas putida KT2440]
 gi|24985387|gb|AAN69308.1|AE016568_3 sensory box protein [Pseudomonas putida KT2440]
          Length = 503

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 92/181 (50%), Gaps = 14/181 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVF-FDIDYFKQIND 144
           E   ++ +I  ++  D L+GL N + F   L      GS N KL+     D+D FK IND
Sbjct: 264 EELAAHAQIHHMAHHDALTGLPNRTLFHERLRQALLRGSENAKLTAALCLDLDNFKNIND 323

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH  GDK++  L  +L         + RLGG+EFA    G   ++AA   N  +++I+
Sbjct: 324 SLGHAFGDKLLRELGKRLRRELREHDTLARLGGDEFAVVLTGLEGRDAAC--NTAQRLIK 381

Query: 205 --NSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +    I     ++ ++I   IA   H +    + Y AD ALY AK++GRNR  CF D+
Sbjct: 382 AISPPFRIEGHQFAVGVSIGIAIAPDDHDQAEQLLGY-ADMALYQAKRNGRNRYECF-DV 439

Query: 262 E 262
           E
Sbjct: 440 E 440


>gi|311103802|ref|YP_003976655.1| diguanylate cyclase [Achromobacter xylosoxidans A8]
 gi|310758491|gb|ADP13940.1| diguanylate cyclase, GGDEF domain protein 1 [Achromobacter
           xylosoxidans A8]
          Length = 265

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 10/162 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKV 154
           + S  D L+GLLN  A +  +     ++S       +   D+D+FK +ND +GH  GD+ 
Sbjct: 99  ETSNRDALTGLLNRRALMEMIKQEVLRVSRGGSTFVVAMLDVDHFKSVNDRYGHETGDRA 158

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  L+  L          GR GGEEF    L S++ EAA    D R +     + I+ G 
Sbjct: 159 LVELAGALCNNLREYDLCGRWGGEEFLVL-LPSTQPEAAQRVMD-RLVGAVRALAITVGD 216

Query: 215 SI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  +T+S G+A     E  S  + RADQALY+AK+ GR+RV
Sbjct: 217 GVLGLTVSIGMAYHQLGETFSETLSRADQALYLAKQDGRDRV 258


>gi|189426005|ref|YP_001953182.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter lovleyi SZ]
 gi|189422264|gb|ACD96662.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter lovleyi SZ]
          Length = 308

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 94/179 (52%), Gaps = 15/179 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQIND 144
           EL    + +++LS +D L+G+ N  A   +L      GS + K LS++  DID+FK  ND
Sbjct: 126 ELKRQRDLLARLSHLDGLTGIPNRRALDEALEREWRRGSRSLKPLSLLMIDIDHFKAYND 185

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           + GH  GD  +  ++  L    G    FVGR GGEEF A    +    A ++A ++ + +
Sbjct: 186 SCGHLAGDDCLRTVAQTLKQSLGRAADFVGRYGGEEFLAVLPETDADGAQVVAREVIEEM 245

Query: 204 ENSQINISSGP-----SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               I   + P     +I I I+  +A+R H  P+  ++  AD ALY AK+ GRNR+V 
Sbjct: 246 AKLAIPHPASPQGEKVTISIGIATAVAKREHL-PV-FLLQEADSALYRAKQEGRNRIVA 302


>gi|71280896|ref|YP_270210.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71146636|gb|AAZ27109.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 536

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 83/159 (52%), Gaps = 12/159 (7%)

Query: 107 DCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N +AF      S+  ++ K   L++V  DID FK+IND +GH  GDK +  ++
Sbjct: 378 DALTKLANRAAFDDFFAKSMIRFHRKSFPLALVVIDIDDFKKINDTYGHTAGDKTLQVIA 437

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA--NDLRKIIENSQINISSGPSIH 217
           + +V      +FVGR GGEEF    + S  QE A+ A  N L   +        +   + 
Sbjct: 438 NSIVKNVSKGVFVGRYGGEEF--VLIYSKIQEEALTAELNALNNFVARLPFKFKTN-KVS 494

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           IT+S G       + I     RADQA+Y AKK G+N+V+
Sbjct: 495 ITLSIGATHIKPDDNIHIAFERADQAMYKAKKQGKNQVI 533


>gi|85711920|ref|ZP_01042975.1| Signaling protein with a acyltransferase and GGDEF domains
           [Idiomarina baltica OS145]
 gi|85694317|gb|EAQ32260.1| Signaling protein with a acyltransferase and GGDEF domains
           [Idiomarina baltica OS145]
          Length = 594

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 87/180 (48%), Gaps = 11/180 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQI 142
           L+EL  + N + Q +  D L+GL N   F   +         N++ + ++  DID FK +
Sbjct: 413 LRELQEANNELEQRNLEDPLTGLHNRRYFTQQIEREYRRSRRNQRPMCLLMIDIDKFKAV 472

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH VGD ++  +S +L      P   V R GGEEFA     +  Q   + A  L K
Sbjct: 473 NDTYGHGVGDDILQAVSTELRKQARRPTDAVCRYGGEEFAFILAETDLQNGLVFAERLVK 532

Query: 202 IIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I     +   G    ITISAG+A  +      +  +   AD ALY AK+ GR++VV  S
Sbjct: 533 HIRQCVFSTRDGEH-SITISAGVAAIDNTRDHSVHDLFTAADSALYKAKREGRDQVVTTS 591


>gi|91978607|ref|YP_571266.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91685063|gb|ABE41365.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB5]
          Length = 777

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 85/171 (49%), Gaps = 15/171 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLS-IVFFDIDYFKQINDNFGHP 149
           RI  L+R D L+GL N   F         +S G     LS ++F D+D FKQ+ND  GHP
Sbjct: 331 RIIHLARYDELTGLPNRVNFHDEIERILTASQGQNKAALSALLFIDLDQFKQVNDTLGHP 390

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN-SQ 207
            GD+++  ++D+L  +     FV R GG+EF        S ++AA+LA   R+I++  S 
Sbjct: 391 CGDRLLCAVADRLRDMLRPEDFVARFGGDEFVVFQQNIRSNEDAAVLA---RRIVDRLSD 447

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +     + I  S GIA          ++  AD ALY AK  GR    CF
Sbjct: 448 RYLIDHHVVEIGASIGIALTAPATRADILLKNADMALYRAKADGRG-TYCF 497


>gi|332756112|gb|EGJ86465.1| cellulose synthesis regulatory protein [Shigella flexneri 4343-70]
          Length = 475

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ LL  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 282 TMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 341

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G++ 
Sbjct: 342 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGANL 401

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
            +AA +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+A
Sbjct: 402 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 461

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 462 KQAGRNRV 469


>gi|293604454|ref|ZP_06686861.1| GGDEF domain protein [Achromobacter piechaudii ATCC 43553]
 gi|292817331|gb|EFF76405.1| GGDEF domain protein [Achromobacter piechaudii ATCC 43553]
          Length = 488

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 15/206 (7%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISS 121
           E  + +I+ +T++L    ++  +L    + + R     + + ++ D L+G+ N   F   
Sbjct: 282 ERRAALIVPVTLALFFSVMAQIVLFRREMRWRRAFEQQLQERAQTDGLTGIANRRTFDEV 341

Query: 122 LGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVG 173
           L             +S++F D DYFK+ ND +GH  GD+++  L+  L      P     
Sbjct: 342 LEREWAVARRDGTPISLLFLDADYFKRYNDRYGHQEGDELLKMLALALKKKARRPRDLAA 401

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKE 231
           R GGEEF     G+ +++A  +A  +R+ I    +         +T+S G+A       +
Sbjct: 402 RYGGEEFVVLLPGTDKRQAVAIAETIRRAIAELAVPHEDNEGGIVTVSIGVATAVPTGTD 461

Query: 232 PISTIIYRADQALYVAKKSGRNRVVC 257
            +S ++  AD A+Y AKK+GRNRV  
Sbjct: 462 TLSRLVEAADAAVYQAKKAGRNRVAA 487


>gi|224367473|ref|YP_002601636.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223690189|gb|ACN13472.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 600

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 100/186 (53%), Gaps = 14/186 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           +EL I  N++++LS  D L+GL N   F   LG+   +       L+++  D+D+FK+ N
Sbjct: 411 QELAIVNNKLAELSVTDFLTGLANRRHFDEVLGTEWARAVRTFQPLTLIMIDVDHFKKFN 470

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D++GH  GD+ +  ++  LV  +     FV R GGEEF+  + G+    A  LA  LR+ 
Sbjct: 471 DSYGHQAGDECLKKVASALVTNLCRAGDFVARYGGEEFSIISAGTDLAGARELAEKLRRA 530

Query: 203 IEN----SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           ++     ++ ++    +I I I   I +R  K+  S ++  AD+ALY AK  GRNR+  F
Sbjct: 531 VQAMALMNEDSLFGIITISIGIGVCIPDR--KQSASDLVCIADKALYEAKTRGRNRIEDF 588

Query: 259 SDIENN 264
            + +  
Sbjct: 589 GEPQKK 594


>gi|154174291|ref|YP_001409180.1| signaling protein [Campylobacter curvus 525.92]
 gi|153793073|gb|EAU00843.2| signaling protein [Campylobacter curvus 525.92]
          Length = 351

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 99/196 (50%), Gaps = 8/196 (4%)

Query: 68  NLSLV-IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY- 125
           NLS+V + ++  S LL   +  I   +     R+  +   D L+GLLN ++  + L    
Sbjct: 149 NLSMVSVFAVMTSYLLEISNSFIFLNILEQKERVKTMVNHDPLTGLLNRASMQNILQQEA 208

Query: 126 ---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
               +  ++V  DID FK+IND +GH  GD V+  LS+     F    +V R GGEEF  
Sbjct: 209 LFEGKDFAVVMCDIDDFKKINDTYGHSAGDAVLKSLSEIFKNTFRNDDYVARWGGEEFLV 268

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRA 240
               + +  A  + N +++++ N  I    G  I+ T++ G+   +   K  I  +I +A
Sbjct: 269 VIRNAKKFGAISVVNRVKELL-NENIVEFEGTRINATMTFGVVTHDGASKFDIEKMIKKA 327

Query: 241 DQALYVAKKSGRNRVV 256
           D+ LY  K+SG+N V+
Sbjct: 328 DELLYDGKRSGKNIVM 343


>gi|91205788|ref|YP_538143.1| response regulator PleD [Rickettsia bellii RML369-C]
 gi|91069332|gb|ABE05054.1| Regulatory components of sensory transduction system [Rickettsia
           bellii RML369-C]
          Length = 457

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 79/163 (48%), Gaps = 10/163 (6%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N   F       +        KL ++  DID FK +ND +GH  GDKV+
Sbjct: 294 LAAKDGLTGLFNRRYFDVHIKQIVEKANKEGMKLYLLMCDIDNFKHVNDTYGHQAGDKVL 353

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQINISSG 213
              S  L   F     + R GGEEF       +  +A   A  +R  IE  N QI+    
Sbjct: 354 ITTSRILKNTFRVTDLIARFGGEEFTILLNDINIDQAIYTAERVRVKIESMNFQIDEQEK 413

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           P +  T+S G+ E    E I   I R+D+A+Y AK +G+N+VV
Sbjct: 414 P-LKKTVSIGVTEYKKCESIEEFIERSDKAMYEAKTTGKNKVV 455


>gi|298488973|ref|ZP_07006996.1| Probable two-component response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298156471|gb|EFH97568.1| Probable two-component response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 551

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 10/157 (6%)

Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +      S  S  E   + F   DID+FK++ND+ GHP+GD+VI  L+
Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRREGKPLCFAMLDIDHFKKVNDSHGHPMGDRVIKSLA 438

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L        F+GR GGEEFA     +  Q A  + +++R     ++I+  + P+ +  
Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIQSAHKVLDEIRHRF--AEIHYPAQPTDLFC 496

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T SAG+      +   ++  +AD ALY AK +GRN+V
Sbjct: 497 TFSAGVVSLGANDDSLSLASQADTALYCAKHAGRNQV 533


>gi|294626587|ref|ZP_06705185.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599154|gb|EFF43293.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 324

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 15/196 (7%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------I 119
           + +S +++++ ++L +GY     +++  +    + +L+ +D L+GL N           I
Sbjct: 133 QGVSTIVVTL-VTLAVGYAFSLRMQDDRVH---LEELASLDALTGLPNRRMLERALTHQI 188

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                ++   S++  D+D+FK++ND +GH  GD  ++ L+  L      P  V R GGEE
Sbjct: 189 DQRQPHDRLNSLIILDLDHFKEVNDLYGHAAGDAALSDLATILRFEVREPHQVFRFGGEE 248

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F       S  E       LRK+I N       GP   IT+S G A    +        R
Sbjct: 249 FVVLLRAGSLAELEAATERLRKVIRNGL----RGPGGRITVSLGAARHDGETHWQDWFSR 304

Query: 240 ADQALYVAKKSGRNRV 255
           AD ALY+AK  GR+ V
Sbjct: 305 ADAALYLAKNGGRDSV 320


>gi|74317013|ref|YP_314753.1| diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056508|gb|AAZ96948.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) [Thiobacillus denitrificans ATCC 25259]
          Length = 762

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 10/166 (6%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+G  N  A+     ++   L       + + FD D FK IND +GH  GD+V+ 
Sbjct: 324 ARQDALTGCHNRRAYEEDWETFRRDLKNAPQGVAFLLFDCDRFKAINDTYGHAKGDRVLT 383

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++D LV+       + RLGG+EFA     ++  +A  +A   + +++ S  +   G S 
Sbjct: 384 IIADALVMALRANDRLYRLGGDEFATFLSRTTPGQAKQIAQRCQSLLDASAFS-ELGISE 442

Query: 217 HITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            + IS GIA     H E I  +   AD A+Y AK+ GRNR+  + +
Sbjct: 443 PVGISIGIAFCGPEHAEQIDELPKHADIAMYTAKQPGRNRIALYGE 488


>gi|77918781|ref|YP_356596.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77544864|gb|ABA88426.1| response regulator receiver modulated diguanylate cyclase
           [Pelobacter carbinolicus DSM 2380]
          Length = 470

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 17/192 (8%)

Query: 81  LLGYISGSILKELFI----SYNR--ISQLSRIDCLSGLLNHSAF-------ISSLGSYNE 127
           ++  ISG+ L+   I      N+  + +LS  D L+ L NH  +        S    Y+ 
Sbjct: 276 IIASISGNALENAMIFESMETNKKLLEELSVRDSLTQLYNHQYYHTRFEEEFSRAQRYDL 335

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            LS +FFDID FK+IND +GH  GD V+  ++  +  +        R GGEEFA     +
Sbjct: 336 PLSCIFFDIDDFKKINDRYGHLTGDMVLRQIARLIKKLLRKSDISARYGGEEFAICLPNT 395

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALY 245
               A   A  L  +I   +++I      H+T+S G +   +    S   +I  AD+A+Y
Sbjct: 396 GTDSANQFAERLLVLIR--ELSIQQLKGEHVTVSMGTSTYMNNNVASYRELIQLADKAMY 453

Query: 246 VAKKSGRNRVVC 257
            AK+SG+NR+ C
Sbjct: 454 QAKESGKNRICC 465


>gi|294649459|ref|ZP_06726883.1| response regulator [Acinetobacter haemolyticus ATCC 19194]
 gi|292824629|gb|EFF83408.1| response regulator [Acinetobacter haemolyticus ATCC 19194]
          Length = 472

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 89/197 (45%), Gaps = 17/197 (8%)

Query: 77  TISLLLGYISGSILKELFISYNR-----ISQLSRI---DCLSGLLNHSAFISSLGSYNEK 128
           TIS  LG I  +I      S N+     I +L      D L+  L    F+ SL    E+
Sbjct: 273 TISTRLGLIMMTIAPLTVSSINKVRSKLIEELQHTIAHDELTSSLTRRQFLQSLQILQEQ 332

Query: 129 L-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                   + +  DID+FK IND++GH +GD+ +         +       GRLGGEEFA
Sbjct: 333 AQNAGHTSAFLMLDIDHFKHINDSYGHQIGDRALQHFVKTTQTLLNPQDLFGRLGGEEFA 392

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST--IIYR 239
                ++E  A   A  +R+ +  S I +       I  S GI     ++  ST  +   
Sbjct: 393 IFIANTNESVAYQCAEKIRQHVSESPIQLEHAQVFSIQTSIGICINTPEKNYSTEQLFKH 452

Query: 240 ADQALYVAKKSGRNRVV 256
           AD ALY AK+ GRN+V+
Sbjct: 453 ADDALYRAKRQGRNQVI 469


>gi|239906697|ref|YP_002953438.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239796563|dbj|BAH75552.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 498

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 11/172 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +N++   +  D L+ + N  AF   L         Y   +S++  DID+FK IND +GH 
Sbjct: 312 FNQVKIRADHDGLTRIHNRRAFDERLIDELRRHQRYRHAMSLLMVDIDHFKGINDRYGHL 371

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD V+  +   L     +  F  R GGEEF      ++E++A ILA  LR  I  ++  
Sbjct: 372 VGDHVLREVGSILSETLRSTDFTARYGGEEFVVILPQTAEEQARILAERLRGAIAEARF- 430

Query: 210 ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  G    IT+S G++  +         ++ +AD+ALY AK  GRN+ VC S
Sbjct: 431 VHDGEDFSITVSIGVSALQPGALTRRKDLLEKADKALYQAKHLGRNQ-VCTS 481


>gi|237797366|ref|ZP_04585827.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|237805946|ref|ZP_04592650.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331020216|gb|EGI00273.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331027056|gb|EGI07111.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 531

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 94/191 (49%), Gaps = 11/191 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN----HSAFISSLGS 124
           LS+V+  I +  L+  + GS   +L  S      L+R D LSGLLN    H   ++ L  
Sbjct: 70  LSMVVPFILLKRLMQRLQGSY-NDLLASQTLSDSLARHDPLSGLLNRRVFHEQLVARLQE 128

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAA 183
            + + ++   D+D FK IND  GH VGD  I  +++ L     G    V RLGG+EF  A
Sbjct: 129 TSMQTAVFLIDLDKFKLINDTHGHAVGDAAICAVAESLREATAGLQASVARLGGDEFGLA 188

Query: 184 ALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRAD 241
             G+ S+ E A LA  +   I  S+ ++S    + ++ S G+A           ++ RAD
Sbjct: 189 VSGNFSQVELATLAESVLSKIAASRTSVS---RVALSASLGVAVSPLDGSDADILLQRAD 245

Query: 242 QALYVAKKSGR 252
            A+Y  K  GR
Sbjct: 246 SAMYRGKSGGR 256


>gi|77918248|ref|YP_356063.1| response regulator [Pelobacter carbinolicus DSM 2380]
 gi|77544331|gb|ABA87893.1| response regulator receiver modulated diguanylate cyclase
           [Pelobacter carbinolicus DSM 2380]
          Length = 470

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 15/169 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  LS  D L+ L NH  + S L         YN  LS +F DID FK IND +GH  GD
Sbjct: 301 LEDLSVRDSLTKLYNHQHYHSRLEDEFSRAQRYNLDLSCIFLDIDNFKNINDRYGHLAGD 360

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL--RKIIENSQINI 210
            V+  ++  +  V        R GGEEFA     +      + AN+L  R ++   +++I
Sbjct: 361 MVLRQIARLISQVIRKSDISARYGGEEFAICLPNT----GGVAANELAERLLVMIRELSI 416

Query: 211 SSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
                 H+T+S G +   +      S +++ AD A+Y AKKSG+NR  C
Sbjct: 417 QQLKGEHVTVSIGTSTYSNHNVASYSELLHLADDAMYEAKKSGKNRFCC 465


>gi|73539344|ref|YP_299711.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Ralstonia eutropha JMP134]
 gi|72122681|gb|AAZ64867.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Ralstonia eutropha JMP134]
          Length = 1076

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 13/170 (7%)

Query: 100 ISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  L+  D L+GL N +       A +     + E+++++  D+D+FK IND+ GHPVGD
Sbjct: 621 IRHLALHDALTGLPNRAELTERCEAVLLHARRHGERVALLLLDLDHFKHINDSLGHPVGD 680

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKIIENSQINI 210
            V+  ++D+L         V R+GG+EFA    G      A LA    L ++ E  +I  
Sbjct: 681 DVLRTIADRLKAAVRQGDLVARMGGDEFAVVLGGLRHDTEAELAASKILARVSEALEI-- 738

Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             G  + +T S GIA      E ++ ++  AD ALY AK+ GR ++  F+
Sbjct: 739 -GGQRLRVTPSLGIAMFPADGESLTDLLKSADAALYAAKQGGRAQLRRFA 787


>gi|302186019|ref|ZP_07262692.1| GGDEF domain-containing protein [Pseudomonas syringae pv. syringae
           642]
          Length = 424

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 100/228 (43%), Gaps = 32/228 (14%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F+ L    +   +L I+   + L+   I+ ++  E +       Q++  D L+GL    A
Sbjct: 198 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 247

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
               +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        R GG
Sbjct: 248 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAYRYGG 307

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINI-------------------SSGPSIHI 218
           EEFA      S  E       +R+ I N +I +                   +   S+ +
Sbjct: 308 EEFAIVFAAKSIDECMPHLEAIRETIANYEIQLRNKDNRPQDDQQGRQRRSGAQAGSVSV 367

Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           T+S G+AER   H+ P   ++  ADQALY AK +GRN VV +  +   
Sbjct: 368 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 414


>gi|167569542|ref|ZP_02362416.1| GGDEF domain protein [Burkholderia oklahomensis C6786]
          Length = 454

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 9/176 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L+EL  +  ++  L+  D L+G  N   FI  + +            S++  D+D FK I
Sbjct: 279 LQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQAEIARAKRDGTAFSLLALDLDNFKTI 338

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           NDN+GH VGD V+     Q +        + R+GGEEF           A+ +A  +R  
Sbjct: 339 NDNYGHQVGDVVLRNFVRQCLTAIRPYDHIARVGGEEFMVLLPRMLADAASGIAERVRTS 398

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           I N+   I  G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV 
Sbjct: 399 IANASFGI-DGRHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKHEGRNRVVA 453


>gi|189426101|ref|YP_001953278.1| diguanylate cyclase [Geobacter lovleyi SZ]
 gi|189422360|gb|ACD96758.1| diguanylate cyclase [Geobacter lovleyi SZ]
          Length = 410

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 26/175 (14%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D ++GL +  A    L     + +I   D+D+FK+ ND +GH VGD+V+  ++ +L+ V 
Sbjct: 237 DDMTGLPSRRALNELLRGLGSRYAIAMVDVDHFKRFNDTYGHDVGDQVLKVVAGRLMAVS 296

Query: 167 G--TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS------------ 212
           G   P    R GGEEF     G S ++AA     LRK IE  ++ + S            
Sbjct: 297 GGGRPF---RYGGEEFTVIFPGKSAKDAAPHLERLRKAIEEYKMALRSDDRPKDDSKGQV 353

Query: 213 -------GPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259
                     + +T+S G+AE   +   +  + R AD ALY AK  GRN+ VC +
Sbjct: 354 SRNRQYASRDVSVTVSIGVAESGSRYTTAEEVIRAADSALYRAKNGGRNQ-VCLA 407


>gi|71737352|ref|YP_276536.1| response regulator /diguanylate cyclase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557905|gb|AAZ37116.1| response regulator, putative/diguanylate cyclase, putative
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320322716|gb|EFW78809.1| response regulator, putative/diguanylate cyclase, putative
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330499|gb|EFW86478.1| response regulator, putative/diguanylate cyclase, putative
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 551

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 10/157 (6%)

Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +      S  S  E   + F   DID+FK++ND+ GHP+GD+VI  L+
Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRREGKPLCFAMLDIDHFKKVNDSHGHPMGDRVIKSLA 438

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L        F+GR GGEEFA     +  Q A  + +++R     ++I+  + P+ +  
Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIQSAHKVLDEIRHRF--AEIHYPAQPTDLFC 496

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T SAG+      +   ++  +AD ALY AK +GRN+V
Sbjct: 497 TFSAGVVSLGANDDSLSLASQADTALYCAKHAGRNQV 533


>gi|330869804|gb|EGH04513.1| sensory box protein [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 722

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 29/214 (13%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--- 115
           +G   +L  ++  + ++ T  LL+   +   + +L  +  ++  L+  D L+GL N    
Sbjct: 238 HGAPLVLDISVEFITLNNTACLLM---NARDIGQLKTAQAQVQHLAYHDPLTGLPNRALL 294

Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
               S  +S L   N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         
Sbjct: 295 MDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 354

Query: 172 VGRLGGEEFAAAALG------SSEQEAAILANDLRKIIENSQI----NISSGPSIHITI- 220
           V RLGG+EF     G         Q+  +LA++LR+++          +   PSI I + 
Sbjct: 355 VARLGGDEFVVLICGLDGTRDEVTQQVRVLADNLRELLAEPMFLDGHRLQVTPSIGIVLI 414

Query: 221 -SAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
              G+A        + ++ RAD ALY AK SGRN
Sbjct: 415 PDDGLAP-------ADLLKRADIALYRAKDSGRN 441


>gi|330505288|ref|YP_004382157.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328919574|gb|AEB60405.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 366

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 9/169 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148
           +Y  + +L++ D L+G+ +  +F  +L    ++       L +V  D+D+FKQ+ND +GH
Sbjct: 182 AYEELERLAQTDSLTGVASRGSFQHALQRSIQEAERSSGHLVLVLLDVDHFKQVNDQWGH 241

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD  +  +   L        F+GRLGGEEF      +    A  L   LRK I +  +
Sbjct: 242 EAGDMALQHICQILQHRLRVTDFLGRLGGEEFGLLLRHTDSAGADPLVEKLRKQIADQPL 301

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
               G  I ++ + G+A        +  +YR AD+ LY  K+ GRN++V
Sbjct: 302 EY-DGAQIALSATFGLAAWPRDGRSAAELYRTADRRLYSGKQRGRNQLV 349


>gi|257456482|ref|ZP_05621678.1| putative ggdef domain protein [Treponema vincentii ATCC 35580]
 gi|257446142|gb|EEV21189.1| putative ggdef domain protein [Treponema vincentii ATCC 35580]
          Length = 686

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 108/240 (45%), Gaps = 39/240 (16%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYI--LVENLSLVIISITISLLLGYISGSIL 90
           I+F I I ++I    +FLFY  +   Y L+    L+E   LV+I    +L          
Sbjct: 463 IWFYILIISLI----VFLFY-KIHKLYWLQRYADLLEEKQLVLIQDNFTL---------- 507

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQI 142
                      +LS +D L+G+ N   +I  LG         +   ++++ FDID+FK  
Sbjct: 508 ----------KELSLLDHLTGIGNRR-YIDMLGLKIWQMAMEHKTAIAVMMFDIDFFKNY 556

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD+++  +   L     T    +GR GGEEF          +A  +A  +RK
Sbjct: 557 NDRFGHQAGDELLRLIGADLKKRIRTETDLIGRYGGEEFLIVMYNLFPDKAMHIAEGIRK 616

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFS 259
            +E              TIS G+      E      +I++AD ALY AK++GRN+VV + 
Sbjct: 617 TVETMHERHPKEIVGQATISIGVFSETPSEEDTFEQMIHKADCALYRAKQTGRNKVVFYD 676


>gi|119776713|ref|YP_929453.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B]
 gi|119769213|gb|ABM01784.1| GGDEF domain protein protein [Shewanella amazonensis SB2B]
          Length = 312

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 90/169 (53%), Gaps = 19/169 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE---------KLSIVFFDIDYFKQINDNFGHP 149
           ++++LS  D L+GL N   F S L  +NE          L+++  D+D+FK  ND+FGH 
Sbjct: 142 KVAKLSMHDPLTGLANRRLFNSFL--HNEWRRSQREQVPLTLILLDLDHFKSCNDHFGHL 199

Query: 150 VGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQ 207
           VGD+ +  +S  L+ V   P     R GG+EF A  LG++   A + LA  +R  IEN  
Sbjct: 200 VGDEHLQQVSQVLLSVCQRPTDLACRFGGDEF-ALVLGNTNAAAGLGLAEKVRSTIENLN 258

Query: 208 INISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRN 253
           I I  G  + +T S GIA        E  +T+   AD ALY AK +G+N
Sbjct: 259 IKIEDG--LRLTSSLGIATLEPGQQMEQENTLCSLADSALYQAKAAGKN 305


>gi|94985714|ref|YP_605078.1| diguanylate cyclase with PAS/PAC sensor [Deinococcus geothermalis
           DSM 11300]
 gi|94555995|gb|ABF45909.1| diguanylate cyclase with PAS/PAC sensor [Deinococcus geothermalis
           DSM 11300]
          Length = 531

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 9/158 (5%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N     ++L        +  +  S+V  DID+FKQIND  GH  GD V+  ++
Sbjct: 365 DPLTGLHNRRFLQTALEEAQGRAAASAQPFSLVIVDIDHFKQINDRVGHGGGDAVLHSVA 424

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L    GT   + R GGEEF    L  +  EAA+   +  +     Q+ +  G ++  T
Sbjct: 425 RLLEAHRGTGETLCRYGGEEF-VLVLPDTPLEAALTRAEAYRAALEGQVVMYGGQALRCT 483

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S G+A    H      ++  AD+ALY AK+ GRNRVV
Sbjct: 484 ASLGVATFPTHGTAAEVVLTAADEALYTAKRQGRNRVV 521


>gi|172058526|ref|YP_001814986.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15]
 gi|171991047|gb|ACB61969.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15]
          Length = 565

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 9/174 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVG 151
            R+   SR D ++ L N+ A +   G    +       S +  D+D+FKQIND +GH VG
Sbjct: 392 ERLLTDSRTDAMTKLPNYRA-LQEWGDRRIRQRDLYPFSALMIDLDHFKQINDTYGHEVG 450

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++  L+        V R GGEEF      +  + A I+A  +R+ +  + I + 
Sbjct: 451 DIVLFEVAKLLMQATRITDLVARYGGEEFVVLLPNTDLESAQIVAERIRETLHANPIQV- 509

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYV-AKKSGRNRVVCFSDIENN 264
            G S+ IT S G+        ++++I  AD+A+Y+ AK  GR+RV  + + +  
Sbjct: 510 EGDSLRITASIGVDTLNELGDLASLIRNADRAMYIGAKFQGRDRVASYQEWKER 563


>gi|325497661|gb|EGC95520.1| diguanylate cyclase, GGDEF protein [Escherichia fergusonii ECD227]
          Length = 463

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 78/161 (48%), Gaps = 15/161 (9%)

Query: 107 DCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N S F + L        N+   ++  DID+FK +ND +GHP GDKVI  + D 
Sbjct: 296 DPLTNIFNRSYFFNELKGQVNSGDNKPFCVMIMDIDHFKSVNDTWGHPEGDKVIKAVVDI 355

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216
           +         + R+GGEEF         +E   LA  +RK +E     N Q  I+   +I
Sbjct: 356 IGKSIRPDDVLARVGGEEFGVMLTHLECKEGEELAERIRKNVEQLTDNNPQYAIAQKVTI 415

Query: 217 HITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
            I +     +  H       IYR AD ALY AK +GRN+V+
Sbjct: 416 SIGVVVTQGDVLHPND----IYRLADNALYNAKATGRNKVI 452


>gi|294625114|ref|ZP_06703759.1| sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292600578|gb|EFF44670.1| sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 375

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 13/163 (7%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GL N  AF  +L +  E+       LS+   D+D+FK +ND  GH  GD V+ 
Sbjct: 219 TRTDPLTGLPNRRAFAVALAAATEQARAVGQPLSVALLDVDHFKTVNDVHGHDQGDAVLR 278

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            LS  L         + R GGEEF      +   +A +    LR+ +    I      ++
Sbjct: 279 ALSTLLRAHMAGAGTIARYGGEEFVLLLPNADLLQARVQCEYLRQSVAAMTI------AL 332

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +T+S G+A    +E +  +I RADQALY AK+ GR++VV   
Sbjct: 333 PVTVSIGVATLYPQESVEAVIKRADQALYAAKRGGRDQVVALE 375


>gi|190573466|ref|YP_001971311.1| putative GGDEF and GAF signalling protein [Stenotrophomonas
           maltophilia K279a]
 gi|190011388|emb|CAQ45003.1| putative GGDEF and GAF signalling protein [Stenotrophomonas
           maltophilia K279a]
          Length = 356

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 88/173 (50%), Gaps = 14/173 (8%)

Query: 91  KELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQI 142
           +++ ++ N  +++ SR D L+GL N  A  ++L     ++        +   DID+FK I
Sbjct: 186 QDVLLAQNADLAEQSRTDALTGLPNRRAMAAALEEAVAEIDGQPGVACVALLDIDHFKHI 245

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD+V+A L   L   F       R GGEEF A   G+  + A +    LR  
Sbjct: 246 NDFQGHATGDRVLAELGVLLRSHFAGRGMAARYGGEEFVAVMPGTDLRTAELQCEFLRLA 305

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + +  +         +TIS G+A+    E +  ++ RAD+ALY AK +GRNRV
Sbjct: 306 VADLPLGFP------VTISIGVAQHQPGESVDEMLARADKALYRAKGNGRNRV 352


>gi|170691900|ref|ZP_02883064.1| diguanylate cyclase [Burkholderia graminis C4D1M]
 gi|170143184|gb|EDT11348.1| diguanylate cyclase [Burkholderia graminis C4D1M]
          Length = 563

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 87/182 (47%), Gaps = 25/182 (13%)

Query: 90  LKELFISYNRI-SQLSRIDCLSG---------LLNHSAFISSLGSYNEKLSIVFFDIDYF 139
           L E   S N + S  +R D L+G         LL H    + LG  N+ L +   D+D+F
Sbjct: 372 LAEQLQSANTLLSAEARHDALTGALSRRYFLDLLRHEIDRAHLG--NQPLCMAIADLDHF 429

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQIND FGH  GD+ +    +           +GRLGGEEF     G+       LA   
Sbjct: 430 KQINDRFGHAAGDRALEHFVETCRAELRGADAIGRLGGEEFGVLLPGTD------LAGG- 482

Query: 200 RKIIENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           R+++E  ++ + + P      S+ +++S GI E    +    I+ RAD ALY AK  GR+
Sbjct: 483 REVVERLRLRLKAVPSAKLPASVTLSVSIGITELSVDDLPERIMSRADMALYAAKTGGRD 542

Query: 254 RV 255
           R 
Sbjct: 543 RT 544


>gi|217962904|ref|YP_002341482.1| GGDEF domain protein [Bacillus cereus AH187]
 gi|229142158|ref|ZP_04270683.1| GGDEF domain protein [Bacillus cereus BDRD-ST26]
 gi|217068114|gb|ACJ82364.1| GGDEF domain protein [Bacillus cereus AH187]
 gi|228641447|gb|EEK97753.1| GGDEF domain protein [Bacillus cereus BDRD-ST26]
          Length = 348

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 27/233 (11%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91
           SIFI  + F  N++   I + P      +L +++S+V + +  S +  YI+      +L+
Sbjct: 126 SIFIRWIWF--NVYSLSILIVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQ 179

Query: 92  --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
             ELF    ++ Q + ID L+GL N   F       I +    N+ L ++  DID+FK  
Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNDSLCLLLIDIDHFK-- 234

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
              +GHP GD+V+  +   L  V   P    R GGEEFA             +   +R  
Sbjct: 235 -STYGHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAA 293

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E     +  G  I IT+S GI+   +++     I  AD ALY +K++GRN+V
Sbjct: 294 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 344


>gi|332533055|ref|ZP_08408925.1| GGDEF family protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037534|gb|EGI73987.1| GGDEF family protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 507

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 78/151 (51%), Gaps = 11/151 (7%)

Query: 108 CLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
            L+GLLN   F  +        +I+  DID+FK++ND FGH  GD+ +  L+D +  +  
Sbjct: 363 SLNGLLNQLMFKQT------PFAILEIDIDFFKRVNDTFGHDKGDEALKSLTDIIKKLSR 416

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
               V R+GGEEF       + Q A  +A  LRK +E++ +         ITIS GIA  
Sbjct: 417 KDDIVARIGGEEFVLVLPNENSQSALKIAERLRKTVESTNMETIG----FITISIGIATW 472

Query: 228 C-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             H   I  +   AD+ALY AK+ GRN+ + 
Sbjct: 473 PEHSNDIDQVYKCADKALYHAKEHGRNQCIV 503


>gi|330887960|gb|EGH20621.1| response regulator, putative/diguanylate cyclase [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 436

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 10/157 (6%)

Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +      S  S  E   + F   DID+FK++ND+ GHP+GD+VI  L+
Sbjct: 264 DSLTGLYNHTHILQLLEDCSFRSRREGKPLCFAMLDIDHFKKVNDSHGHPMGDRVIKSLA 323

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L        F+GR GGEEFA     +  Q A  + +++R     ++I+  + P+ +  
Sbjct: 324 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIQSAHKVLDEIRHRF--AEIHYPAQPTDLFC 381

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T SAG+      +   ++  +AD ALY AK +GRN+V
Sbjct: 382 TFSAGVVSLGANDDSLSLASQADTALYCAKHAGRNQV 418


>gi|330829429|ref|YP_004392381.1| GGDEF domain-containing protein [Aeromonas veronii B565]
 gi|328804565|gb|AEB49764.1| GGDEF domain protein [Aeromonas veronii B565]
          Length = 412

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 9/200 (4%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           LSL+       LLL  +     + L  +  ++ + +  D L+GL +   F   +      
Sbjct: 206 LSLLFTIARSYLLLSLVHTRQQQALLATQRKLERRANQDELTGLFSRHYFERQVALRARD 265

Query: 129 L----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           +     ++  D+D FKQIND  GHP GD ++  +   +     +    GRLGG+E  A  
Sbjct: 266 VRSPSQLLLIDLDNFKQINDRHGHPAGDAMLRAVGRVIANTLPSEGMAGRLGGDEL-ALL 324

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
           L +  Q      + L++ I  +   ++ GP   I++S G+      E       RADQAL
Sbjct: 325 LMADPQTLPDYCHSLQQQIAEATRELAGGP---ISLSIGLTSLHPDEGFEAAYLRADQAL 381

Query: 245 YVAKKSGRNRVVCFSDIENN 264
           Y AK++GR R  C  ++ +N
Sbjct: 382 YAAKQAGRQR-ACVQELHHN 400


>gi|295675892|ref|YP_003604416.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
 gi|295435735|gb|ADG14905.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
          Length = 563

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 84/183 (45%), Gaps = 27/183 (14%)

Query: 90  LKELFISYNRI-SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           L E   S N + S  +R D L+G L+   F       I    +  E L +   D+D+FKQ
Sbjct: 372 LAEQLQSANTLLSAEARHDALTGALSRRYFLDLLRHEIDRAHADREPLCMAIADLDHFKQ 431

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-- 199
           IND FGH  GD+ +    D       +   +GRLGGEEF             + A DL  
Sbjct: 432 INDRFGHAAGDRALEHFVDTCRAELRSSDAIGRLGGEEFG----------LLLPATDLAG 481

Query: 200 -RKIIENSQINISSGPSIHITISA------GIAERCHKEPISTIIYRADQALYVAKKSGR 252
            R+++E  ++ + + PS  +  SA      GI E    +    ++ RAD ALY AK  GR
Sbjct: 482 GREVVERLRLRLKAMPSPKLPASAGLSVSIGITELSLDDLPERLMSRADTALYAAKTGGR 541

Query: 253 NRV 255
           +R 
Sbjct: 542 DRT 544


>gi|84515270|ref|ZP_01002632.1| two component diguanylate cyclase [Loktanella vestfoldensis SKA53]
 gi|84510553|gb|EAQ07008.1| two component diguanylate cyclase [Loktanella vestfoldensis SKA53]
          Length = 442

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 12/164 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q +  D L+GL N       L   +E+       L+++  DID+FK IND +GH  GD+V
Sbjct: 270 QAAVTDPLTGLFNRRYADHHLARMSEQSAVAGSALAVMMIDIDHFKAINDTYGHAAGDRV 329

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG- 213
           +  L+ +L         V R+GGEEF  A   +S ++A   A+ LR+++  +  ++    
Sbjct: 330 LVALAARLRDNLRAVDLVARIGGEEFLIAMPRTSARQAQGAADRLRRLVSQTPFDLGEAY 389

Query: 214 PSIHITISAGIA---ERCHKEPISTIIYR-ADQALYVAKKSGRN 253
             I +T+S G+A   E    +P + ++   AD ALY AK +GR+
Sbjct: 390 APIPVTVSVGVALSDEAGQTQPDTHLMCDLADAALYRAKSAGRD 433


>gi|323492191|ref|ZP_08097349.1| hypothetical protein VIBR0546_03395 [Vibrio brasiliensis LMG 20546]
 gi|323313504|gb|EGA66610.1| hypothetical protein VIBR0546_03395 [Vibrio brasiliensis LMG 20546]
          Length = 565

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/159 (38%), Positives = 84/159 (52%), Gaps = 7/159 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           QL   D ++ L N  A    +    E+  L +   DID+FK INDN GH  GDKVI   +
Sbjct: 406 QLRNSDVMTHLDNKLALREQIELNLEQPGLYLAMIDIDHFKAINDNIGHLGGDKVIYHTA 465

Query: 160 DQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           D +   F  P  + + R GGEEF      + E +A      LR+++E S + I +  +I+
Sbjct: 466 DLIRRCFPKPGALSLARYGGEEFCILFNANDENDAYEQCEFLRQMVEQSSVEIDN-TTIN 524

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            TIS GI       P STI  RAD+A+Y AK  GRN+VV
Sbjct: 525 FTISIGITGN-QVSPHSTIS-RADKAMYQAKGFGRNQVV 561


>gi|257093489|ref|YP_003167130.1| response regulator receiver modulated diguanylate cyclase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257046013|gb|ACV35201.1| response regulator receiver modulated diguanylate cyclase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 639

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 89/171 (52%), Gaps = 11/171 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHS---AFISSLGSYNE----KLSIVFFDIDYFKQINDNFG 147
           +++ R+ + +  D L+ L N      F++S  ++ +     ++ +  DID+FK+IND  G
Sbjct: 468 VAHKRLLREALTDTLTQLPNRRHGLDFLASEWAFAQSNALPMACLLLDIDHFKRINDTLG 527

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           HP GD V+  L+D L         V R GGEEFAA    ++ Q A  +A  +R +++   
Sbjct: 528 HPAGDAVLQQLADLLKRASRPEDLVFRYGGEEFAAVLPNANAQTAVQIAERIRGLVQKYD 587

Query: 208 INISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +    SI +T+S G+A      K+    +I  AD ALY AK  GRNRV 
Sbjct: 588 F-LWQRRSIPLTVSIGVAILSSTGKDS-QALIEAADAALYQAKNGGRNRVT 636


>gi|226939565|ref|YP_002794638.1| hypothetical protein LHK_00636 [Laribacter hongkongensis HLHK9]
 gi|226714491|gb|ACO73629.1| Predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Laribacter hongkongensis
           HLHK9]
          Length = 759

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 7/168 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +R+  L+  D L+ LLN  A    L         +  +++F D+D FK IND+FGH  GD
Sbjct: 320 DRLVFLASHDPLTRLLNRDALFRKLEDICLSGIEQSFAVLFIDLDRFKLINDSFGHATGD 379

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++  ++ +L  V G+   + R GG+EF    L  + Q  A++    R + E SQ     
Sbjct: 380 NLLRIVAARLSFVVGSNALLARQGGDEF-TLLLEDTGQRTAVIDMANRLLDELSQPITLE 438

Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              +HIT S GIA    H +  +T++  AD ALY AK +G+N    F+
Sbjct: 439 NQELHITASIGIALAPEHGKDAATLLRHADTALYRAKDAGKNTFAFFT 486


>gi|254514813|ref|ZP_05126874.1| ggdef domain protein [gamma proteobacterium NOR5-3]
 gi|219677056|gb|EED33421.1| ggdef domain protein [gamma proteobacterium NOR5-3]
          Length = 449

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 80/148 (54%), Gaps = 4/148 (2%)

Query: 109 LSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
           L G+L     I+   S  +  S++  D+D FKQ+ND +GH +GD+V+  ++  L  V   
Sbjct: 302 LDGILKRENQIAH--SAGDAYSLLMIDVDDFKQVNDTYGHAIGDRVLKQVAKVLTHVVRQ 359

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-R 227
             F  R GG+E       S    A   A+ + + I  + +N+  G  I I +S G+AE R
Sbjct: 360 TDFAFRYGGDELLVVLTSSDIDAARRKADAILQSIRAAPVNLDDGRVIPIKVSIGVAEYR 419

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRV 255
            H +   T++ RAD+A+Y AK +G+N+V
Sbjct: 420 GHPD-YETMLKRADEAVYAAKTAGKNQV 446


>gi|325929599|ref|ZP_08190713.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
 gi|325540109|gb|EGD11737.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
          Length = 507

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 88/180 (48%), Gaps = 18/180 (10%)

Query: 96  SYNRISQLSRI---DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145
           S NR+  L+     D L+G+ N     ++L    E        LSI F D+D FK++ND 
Sbjct: 317 SENRMRHLAEQASRDALTGVFNRHQLGTALTHEFELASRQGWPLSIAFIDLDEFKRVNDA 376

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKII 203
            GH VGD+V+   +  L  +  T   V R GGEEF    L ++  +AA++  +  L +I 
Sbjct: 377 HGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEF-LVILPNTPADAALMVIERILAEIA 435

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRVVCFS 259
                 +  GP +HIT SAG+A     E     I  ++  AD  LY +K  GRNRV  + 
Sbjct: 436 RTPMAQLQGGP-LHITFSAGLATHGGAERQFDSIDHLLQAADSTLYRSKHRGRNRVTAYD 494


>gi|298241021|ref|ZP_06964828.1| diguanylate cyclase [Ktedonobacter racemifer DSM 44963]
 gi|297554075|gb|EFH87939.1| diguanylate cyclase [Ktedonobacter racemifer DSM 44963]
          Length = 357

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++ L N  A I  +        S     +++F D+D+FKQ+ND +GH VGD ++  + 
Sbjct: 188 DPVTELPNRRAIIDEIEHALSWAHSIQASCALLFVDLDHFKQVNDLWGHRVGDALLHEVG 247

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-- 217
            +   +      VGR GGEEF    L +S   A  +A  +R I+        +   IH  
Sbjct: 248 RRFRTLMTPQCIVGRYGGEEFVFVLLDASLPGAKAIAEQVRTILATQPYTWQADSGIHTI 307

Query: 218 -ITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
            +T S GIA  R ++     +I +AD A+YVAK+ GRN
Sbjct: 308 TVTASIGIALSRQYEATSDDLIEQADHAMYVAKQMGRN 345


>gi|281413173|ref|YP_003347252.1| diguanylate cyclase [Thermotoga naphthophila RKU-10]
 gi|281374276|gb|ADA67838.1| diguanylate cyclase [Thermotoga naphthophila RKU-10]
          Length = 416

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 12/173 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L EL+    ++ +++  D L+GL N + F       +      N  LS +  D+D FK
Sbjct: 246 ALLFELYEEKEKLKEIAHRDSLTGLFNRAFFNEWIQDQVRKAQFQNVPLSFIMIDVDNFK 305

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           QIND +GH  GDKV+ F++  +     +  F  R GG+EF      +S+Q+A  +A+ +R
Sbjct: 306 QINDTYGHLTGDKVLRFVARCISDSIRSSDFAVRYGGDEFLVVLYNTSKQQAEQVASRIR 365

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           + I N     S    + + IS G+AE    +     + +AD+ +Y  K+  ++
Sbjct: 366 EKIRN-----SDELGVDVDISYGVAELKPGDNYLKFLQKADEEMYGMKREKKS 413


>gi|163794463|ref|ZP_02188434.1| GGDEF domain [alpha proteobacterium BAL199]
 gi|159180187|gb|EDP64710.1| GGDEF domain [alpha proteobacterium BAL199]
          Length = 360

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 78/159 (49%), Gaps = 9/159 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L S   K       L ++  DID+FK  ND +GH VGD+V+  + 
Sbjct: 181 DGLTGLANRMQFERELRSAAAKAMEDGTTLCLLMADIDHFKTFNDTYGHMVGDQVLRLVG 240

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIH- 217
             L+          R GGEEF          EAA +A  +R +I E   +  SSG  +  
Sbjct: 241 RVLIEAIRPGDLAARFGGEEFVVVLPECRLDEAARIAERIRERIGEKHVVRRSSGDDLGT 300

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +T+S G+      E +  +I RAD  LY AK++GRNRV 
Sbjct: 301 VTLSLGVTAYQPGEVVGQLIERADTGLYDAKQAGRNRVA 339


>gi|270261216|ref|ZP_06189489.1| diguanylate cyclase [Serratia odorifera 4Rx13]
 gi|270044700|gb|EFA17791.1| diguanylate cyclase [Serratia odorifera 4Rx13]
          Length = 552

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 3/153 (1%)

Query: 106 IDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +D L+ + N   F     SL + +  L+    DID FK +ND+FGH +GD V+      L
Sbjct: 391 LDPLTNIYNRRKFFRECESLAARSYPLAFCLIDIDNFKNLNDSFGHDIGDSVLVAFGKLL 450

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
              F +     R GGEEFA      + + A  + + LR+      + +  G ++  T S 
Sbjct: 451 QDAFRSSDIFCRYGGEEFAVILGNCTLENAREIMSKLRERTHQLILTLDDGQTVRFTTSC 510

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           GIA+      + T I +AD+ALY  KK+G++R+
Sbjct: 511 GIAQVNSLRLLPTAIKQADEALYFCKKNGKDRI 543


>gi|251788178|ref|YP_003002899.1| diguanylate cyclase [Dickeya zeae Ech1591]
 gi|247536799|gb|ACT05420.1| diguanylate cyclase [Dickeya zeae Ech1591]
          Length = 381

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 104/208 (50%), Gaps = 13/208 (6%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN-RISQLSRIDCLSGLL 113
           L+P  G+  +L  +  ++ +   ISL++  + GS+L  +   Y   +   +R D L+G L
Sbjct: 155 LSPAPGVGTLLTSSPEIITLG-CISLMIA-VMGSLLSLVAKKYLIELPTTARYDDLTGFL 212

Query: 114 NHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
              AF       + +    N  L  +  DID+FKQ+ND+ GH  GDK +  ++D +   F
Sbjct: 213 RRDAFYQLSQRALKTADQENSPLCAMLIDIDHFKQVNDSLGHAAGDKALKAVADIIRHSF 272

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIA 225
                + RLGG+EFA      +++ A  +A  +R+ I E  Q   S  P I ++I   +A
Sbjct: 273 RNRDIICRLGGDEFAVVLPNITQENAIRVAERVREGIYEFGQSASSISPGISVSIGL-VA 331

Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRN 253
                E +  II RAD  LY AK++ RN
Sbjct: 332 AELPDEELDEIIRRADVNLYRAKRT-RN 358


>gi|188583241|ref|YP_001926686.1| diguanylate cyclase [Methylobacterium populi BJ001]
 gi|179346739|gb|ACB82151.1| diguanylate cyclase [Methylobacterium populi BJ001]
          Length = 390

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 97/181 (53%), Gaps = 22/181 (12%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDN 145
           E  I +N  ++++R D L+GL N    ++++G      +  E L  +  DID+FK+ ND 
Sbjct: 212 EAMIEHN--AEMARTDQLTGLFNRH-HLATIGVDLIPKNDREPLGALLIDIDHFKRFNDT 268

Query: 146 FGHPVGDKVIAFLSDQLVVVF-----GTPMFVG---RLGGEEFAAAALGSSEQEAAILAN 197
            GH  GD+ I  +SD +  +       TP  VG   R GGEE      G    +AA L +
Sbjct: 269 QGHLAGDRCIRTVSDLVREMLIPANENTPP-VGTAVRFGGEEILVLLPGMDAAQAAALGD 327

Query: 198 DLRKIIENSQI-NISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            +R+ +E   I +   GP+  +T+S G+A  ++ HKE + T++  AD ALY AK  GRNR
Sbjct: 328 AIRRRVEGVGIPHPGLGPTAVVTLSIGVAAWKKGHKE-LDTLVNAADAALYQAKNLGRNR 386

Query: 255 V 255
           V
Sbjct: 387 V 387


>gi|152990872|ref|YP_001356594.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
 gi|151422733|dbj|BAF70237.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
          Length = 609

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 73/138 (52%), Gaps = 10/138 (7%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +I+  DID+FK +ND +GH  GDKVI  L D +         V R GGEEF        +
Sbjct: 470 TIMMLDIDHFKMVNDTYGHDAGDKVIKILVDTIKENIRKSDVVVRFGGEEFLVLLYNCHK 529

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-----IIYRADQAL 244
           +++  +A ++RK     +I++     IH T+S G+ E     P  T      I  AD AL
Sbjct: 530 EDSLQIAENIRKSFSKKRIDVGD-EKIHKTVSIGLCEF----PKDTKQFWHAIKLADMAL 584

Query: 245 YVAKKSGRNRVVCFSDIE 262
           Y AK++GRN++V  + +E
Sbjct: 585 YQAKENGRNKIVACNSVE 602


>gi|297579178|ref|ZP_06941106.1| GGDEF family protein [Vibrio cholerae RC385]
 gi|297536772|gb|EFH75605.1| GGDEF family protein [Vibrio cholerae RC385]
          Length = 353

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 120/268 (44%), Gaps = 37/268 (13%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFI---ANIFLFYIGLTPFYGLEYILVE 67
           IW C       F P  F I+ S  F+ F+ + +F+   +NI            + + L +
Sbjct: 98  IWSC-------FVPILFYIFTSARFA-FVTSCLFLIIQSNI------------IYWQLQQ 137

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSL 122
             + +  S+ + L   YI   ++  ++    R     +  L+  D L+G  N  +  +S 
Sbjct: 138 TGAAISWSVLLHLCFAYIGIWVVAHVYEDNRRKIENSLLYLASRDPLTGAHNRLSLTTSF 197

Query: 123 GSYNE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
             +        L ++  D+D+FK IND FGH  GDKV+   +     V G      R+GG
Sbjct: 198 QHFERFNDQTSLCLLVIDLDFFKSINDQFGHDTGDKVLIETTRLFAQVVGDNNLY-RIGG 256

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTI 236
           EEF       S ++A  +   LR I+  SQ   + G   + +TIS G+ E    + ++ +
Sbjct: 257 EEFCVTLFDQSLEQAGRVCERLRTIV--SQHLFAFGEKRVQVTISIGVCEYQAGDQLNDL 314

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENN 264
           +  AD  LY AKK+GRN+V  F     N
Sbjct: 315 LKFADMELYRAKKAGRNQVRLFRHGSTN 342


>gi|75676900|ref|YP_319321.1| diguanylate cyclase/phophodiesterase [Nitrobacter winogradskyi
           Nb-255]
 gi|74421770|gb|ABA05969.1| diguanylate cyclase/phosphodiesterase [Nitrobacter winogradskyi
           Nb-255]
          Length = 778

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 89/173 (51%), Gaps = 21/173 (12%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I+ L+R D L+ L N  +F       ++SL   +   +++F D+D FKQIND  GHP G
Sbjct: 336 KINHLARFDSLTELPNRLSFRDEIERLLASLNGESRLSALLFIDLDQFKQINDTLGHPCG 395

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQIN 209
           D+++  ++D+L  +     FV R GG+EF      + S E+ +A+    + ++ E  +++
Sbjct: 396 DRLLCMVADRLRGMLRPEDFVARFGGDEFVVFQQNIRSPEEASALARRIVERLAERYEVD 455

Query: 210 ---ISSGPSIHITI-SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +  G SI I + S GI           ++  AD ALY AK  GR    CF
Sbjct: 456 RHLVEIGASIGIALTSPGIT-------ADNLLKHADMALYRAKADGRG-TFCF 500


>gi|16264943|ref|NP_437735.1| hypothetical protein SM_b20900 [Sinorhizobium meliloti 1021]
 gi|15141082|emb|CAC49595.1| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021]
          Length = 644

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 24/182 (13%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  L+  D L+ L N S+F   L         +++ L+++  D+D FK +ND FGH  GD
Sbjct: 286 IEHLAHHDALTDLSNRSSFDRRLRQALAAAVHHDDALAVLCLDLDRFKAVNDIFGHGEGD 345

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKI----IENSQ 207
           +++  ++D L    G    + RLGG+EFA    G+++ EAA +LA+ + K+    ++  +
Sbjct: 346 RILRKVADILRAGAGEADTIARLGGDEFAIVQTGAAQPEAARLLADRILKLFSEEMDTRR 405

Query: 208 INISSGPSIHITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             ++ G SI + I  G    AER +          AD ALY AK++G+  + CF D E +
Sbjct: 406 DPMAVGVSIGVAICPGDGTTAERLYGN--------ADTALYRAKQTGKG-IACFFDAEMD 456

Query: 265 TC 266
             
Sbjct: 457 AA 458


>gi|115358794|ref|YP_775932.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
 gi|115284082|gb|ABI89598.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
          Length = 492

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 14/193 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128
           I +S++LG    + L+    + + +  L+R D L+GL N   F   L     +       
Sbjct: 300 IAVSVMLG----TQLRRRMRAESELVLLARTDGLTGLNNRRTFGEVLDREWRRARRSRSV 355

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187
            S++F D+D FK  ND +GH  GD  +A ++  +      P     R GGEEF      +
Sbjct: 356 FSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTAARYGGEEFVVLLPDT 415

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALY 245
            E  AA +A  +R  I+   +  +     H+T S G+A     + +   ++I  AD+ALY
Sbjct: 416 PETGAAQIAERIRAAIDELALEHAGSEHGHVTASIGLASWTPDDDVEAGSVIKAADEALY 475

Query: 246 VAKKSGRNRVVCF 258
            AK +GRN+V  F
Sbjct: 476 YAKATGRNKVAAF 488


>gi|95930998|ref|ZP_01313727.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
 gi|95133007|gb|EAT14677.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
          Length = 301

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 95/181 (52%), Gaps = 9/181 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDI 136
           Y+S   + E+     ++ ++++ D L+G+ N +   S L         +   LS++  D+
Sbjct: 118 YLSVQDVSEVVSYQKKLVRMNQTDPLTGVYNRNFMESQLEKEVVRCQRFKHNLSLLMIDV 177

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK +NDN+GH  GD  +  ++ ++        F+ R GG+EF      ++  +A  +A
Sbjct: 178 DLFKNVNDNYGHQCGDFALKEITQRISAKIRQTDFLIRYGGDEFCCLLTETAPDKAIKVA 237

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             LR+ I NS        + ++TIS G+A     +  + +++ +AD ALY+AK+SGRN V
Sbjct: 238 ELLRQQICNSPFQFKD-ITFNVTISIGVAGFDETDIDVESLLRKADSALYMAKQSGRNTV 296

Query: 256 V 256
           +
Sbjct: 297 I 297


>gi|299535431|ref|ZP_07048753.1| hypothetical protein BFZC1_05393 [Lysinibacillus fusiformis ZC1]
 gi|298729192|gb|EFI69745.1| hypothetical protein BFZC1_05393 [Lysinibacillus fusiformis ZC1]
          Length = 627

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 18/175 (10%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHS---AFISSLGSYNEKLSIVFFDIDYFKQ 141
           I+ SIL+       ++ ++  +D L+ L   S    F+     Y++    +  DID FK+
Sbjct: 454 IANSILR------TQLQEMVDLDHLTKLYARSYLDQFVEKSLEYDQSGMFLLIDIDNFKR 507

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH VGDK++  ++ QL    G+     R GGEE +       E+EA  LA+ + +
Sbjct: 508 INDTYGHQVGDKILVQIAVQLKETIGSRGICARWGGEEMSVYVPNIDEKEALELASTIVE 567

Query: 202 IIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +       I S     +TISAG+   +   +    ++   AD ALY AK SG+NR
Sbjct: 568 V-------IPSATDPQVTISAGLITWDERDRPAFQSVFLHADTALYEAKNSGKNR 615


>gi|260424420|ref|YP_003212621.1| hypothetical protein Ctu_1p00450 [Cronobacter turicensis z3032]
 gi|260219228|emb|CBA34582.1| hypothetical protein Ctu_1p00450 [Cronobacter turicensis z3032]
          Length = 493

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 87/181 (48%), Gaps = 21/181 (11%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL  +      ++  D L+GL N   F ++L        +    +S++  DID+FK+ ND
Sbjct: 299 ELLKANQTFKSMAMADSLTGLANRRKFDTTLAKVLADSATSGSPVSLIMLDIDFFKRYND 358

Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           + GH  GD  +  + + L +V   T   V R GGEEFA     ++ +EA  LA     +I
Sbjct: 359 SRGHAAGDACLRLIGNTLQMVTLRTCDLVARYGGEEFAIVLPETTGEEALALAQRAVSMI 418

Query: 204 ENSQINISSG--PSIHITISAGIAERCH-------KEPISTIIYRADQALYVAKKSGRNR 254
            +  +   S   P   +TISAG    CH       ++  S +I  AD ALY+AK  GRN+
Sbjct: 419 RDKHLPHPSTDLPEQVVTISAG----CHTVRGNGREDAFSVLIRGADTALYLAKNRGRNQ 474

Query: 255 V 255
            
Sbjct: 475 A 475


>gi|220935449|ref|YP_002514348.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219996759|gb|ACL73361.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 450

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 89/170 (52%), Gaps = 11/170 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I  L+  D L+GL N + F       I    + + KL+++F D+D FK +ND  GH VG
Sbjct: 279 QIHHLAHHDLLTGLPNRAMFFDRLEAAIDEASAESRKLALMFVDLDRFKPVNDRHGHAVG 338

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINI 210
           D+++  ++ ++  +      VGR+GG+EF        +E +A   A  LR  +E +  +I
Sbjct: 339 DQLLQAVAGRMHTILRAGDLVGRIGGDEFIVLLHDIRTEDDALTAAEKLRCHLE-TPFDI 397

Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             G  + I+ S GIA    H +    +  RAD+A+Y++K  GRN    +S
Sbjct: 398 -EGRRLQISASIGIALYPSHADNARELARRADEAMYLSKAEGRNLTTLYS 446


>gi|89092556|ref|ZP_01165509.1| putative diguanylate cyclase (GGDEF) [Oceanospirillum sp. MED92]
 gi|89083068|gb|EAR62287.1| putative diguanylate cyclase (GGDEF) [Oceanospirillum sp. MED92]
          Length = 337

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 90/176 (51%), Gaps = 13/176 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---------SIVFFDIDYFKQ 141
           K L    ++ S+ +  D L+GLLN   F   +     +          SIV FD+D+FK 
Sbjct: 156 KSLKERLDKASRDAMEDELTGLLNRKGFRKCIEELTAERAVPLDQVPYSIVSFDVDHFKN 215

Query: 142 INDNFGHPVGDKVIAFLSDQ-LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +ND +GH  GDKV+   ++  L  V G  + V R GGEEF      +    A ++A  +R
Sbjct: 216 VNDTYGHLFGDKVLHNTAEVILKSVRGNDIAV-RFGGEEFILLLPDTDLDGARLVAEKVR 274

Query: 201 KIIENSQ-INISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             IE  + IN  +G  +  IT+SAGI+   H   +  +I  AD ALY AK +GRNR
Sbjct: 275 TTIEKVRWINRRTGKKLDPITLSAGISANQHSMALEEVIELADVALYQAKGAGRNR 330


>gi|95929161|ref|ZP_01311905.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95134659|gb|EAT16314.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 515

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 109/256 (42%), Gaps = 22/256 (8%)

Query: 16  EKNLESFSPHTFMIYFSI--FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI 73
           EK LE F     M    I  FF I I     IA +            L Y  + N SLV 
Sbjct: 262 EKKLEDFLDRVHMEVEEIGKFFDIKIQNQKSIAEVLQIANAELSVLNLSYEQM-NRSLVE 320

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYN 126
            ++ + +L          EL      + +L+ +D L+   NH  F       I+     +
Sbjct: 321 KTVQLEMLTA--------ELEKKNKLLERLANVDGLTEAYNHRYFQNFLDREINRSERND 372

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             LS+V  DID FK+ ND  GH VGD ++   +D    +        R GGEEF      
Sbjct: 373 YTLSVVMVDIDNFKKFNDLHGHQVGDYILKQFADVARSLLREYDLFARYGGEEFVLVLPE 432

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPIST--IIYRADQA 243
           ++ QE  ++A   R  +           + +IT S G+++    K+ I    +I +AD A
Sbjct: 433 TNAQEGEVVAEKFRSTLSEHTFT-HERETYYITASFGVSDISPAKDKIDKNDVISQADSA 491

Query: 244 LYVAKKSGRNRVVCFS 259
           LY +KK GRNRV  +S
Sbjct: 492 LYESKKKGRNRVTVYS 507


>gi|330888125|gb|EGH20786.1| sensory box protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 630

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 29/214 (13%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--- 115
           +G   +L  ++  + ++ T  LL+   +   + +L  +  ++  L+  D L+GL N    
Sbjct: 245 HGAPLVLDISVEFITLNNTACLLM---NARDIGQLKTAQAQVQHLAYHDPLTGLPNRALL 301

Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
               S  +S L   N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         
Sbjct: 302 MDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 361

Query: 172 VGRLGGEEFAAAALG------SSEQEAAILANDLRKIIENSQI----NISSGPSIHITI- 220
           V RLGG+EF     G         Q+  +LA++LR+++          +   PSI I + 
Sbjct: 362 VARLGGDEFVVLICGLDGTRDEVTQQVRVLADNLRELLAEPMFLDGHRLQVTPSIGIVLI 421

Query: 221 -SAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
              G+A        + ++ RAD ALY AK SGRN
Sbjct: 422 PDDGLAP-------ADLLKRADIALYRAKDSGRN 448


>gi|325925833|ref|ZP_08187203.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
 gi|325543768|gb|EGD15181.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
          Length = 955

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 8/174 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           +L  L I  +   + +  D L+GL N   F       IS        L +   DID+FK+
Sbjct: 780 LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSGRTLVLAILDIDHFKR 839

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND++ H  GD V+  +   L           RLGGEEFA     ++  EA  L   +R 
Sbjct: 840 INDHYSHASGDAVLHEVGVLLTAAARASDLPARLGGEEFALLLADTTLDEAQALCLRIRA 899

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  +++ N +S   + +T SAG+A     +  S+++ RAD ALY AK +GR+R+
Sbjct: 900 LF-HARHNWASVEGLQVTFSAGVAALRDDDTGSSLMQRADHALYEAKSAGRDRI 952


>gi|320324868|gb|EFW80940.1| sensory box protein [Pseudomonas syringae pv. glycinea str. B076]
          Length = 729

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 29/214 (13%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--- 115
           +G   +L  ++  + ++ T  LL+   +   + +L  +  ++  L+  D L+GL N    
Sbjct: 245 HGAPLVLDISVEFITLNNTACLLM---NARDIGQLKTAQAQVQHLAYHDPLTGLPNRALL 301

Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
               S  +S L   N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         
Sbjct: 302 MDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 361

Query: 172 VGRLGGEEFAAAALG------SSEQEAAILANDLRKIIENSQI----NISSGPSIHITI- 220
           V RLGG+EF     G         Q+  +LA++LR+++          +   PSI I + 
Sbjct: 362 VARLGGDEFVVLICGLDGTRDEVTQQVRVLADNLRELLAEPMFLDGHRLQVTPSIGIVLI 421

Query: 221 -SAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
              G+A        + ++ RAD ALY AK SGRN
Sbjct: 422 PDDGLAP-------ADLLKRADIALYRAKDSGRN 448


>gi|227822959|ref|YP_002826931.1| putative GGDEF/EAL domain transcriptional regulator [Sinorhizobium
           fredii NGR234]
 gi|227341960|gb|ACP26178.1| putative GGDEF/EAL domain transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 784

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 92/180 (51%), Gaps = 24/180 (13%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  L+  D L+ L N S+F       ++   + NE+L+I   D+D FK +ND FGH  GD
Sbjct: 350 IEHLAHHDALTDLSNRSSFERRMSQALTVAAARNEQLAIFCLDLDRFKAVNDIFGHGEGD 409

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKIIENSQIN- 209
           +++  ++D L    G    + RLGG+EFA    G+++ EAA   +D  LR   E    + 
Sbjct: 410 RILRKVADILRAAAGEADTIARLGGDEFAILQTGAAQPEAARQLSDRILRLFAEEMDTHR 469

Query: 210 --ISSGPSIHITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             ++ G S+ + +  G    AER        +   AD ALY AK+SG+  + CF D E +
Sbjct: 470 DPMAVGVSMGVAVYPGDGTTAER--------LCSNADTALYRAKQSGKG-IACFFDAEMD 520


>gi|188586587|ref|YP_001918132.1| response regulator receiver modulated diguanylate cyclase
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351274|gb|ACB85544.1| response regulator receiver modulated diguanylate cyclase
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 340

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 20/190 (10%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQI 142
           LK L  +  +  +L+ ID L+ L N   F  ++ G +         LSI+  DIDYFK  
Sbjct: 150 LKLLEETNKKFEKLATIDELTQLANRRLFDETMRGEWRRANRNGYNLSIILLDIDYFKNF 209

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD+ +  ++ +L  +   P  F  R GGEEFA     +  + A  +A  +R+
Sbjct: 210 NDAYGHQAGDECLKAIAKKLKFLMMRPGDFAARYGGEEFAVILPETDLRGAHSVAEKIRQ 269

Query: 202 IIENSQI-NISSGPSIHITISAGIA-----------ERCHKEPISTIIYRADQALYVAKK 249
            IE  +I +  S  + ++T+S G+A           ++   + I  +I  AD+ALY AK 
Sbjct: 270 GIEELKIPHCDSKVAQYVTVSLGVASADLKNCQGGRDQATDDEIKILIEHADEALYKAKD 329

Query: 250 SGRNRVVCFS 259
           +GRN +    
Sbjct: 330 NGRNTIALMQ 339


>gi|21242238|ref|NP_641820.1| hypothetical protein XAC1486 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|294665676|ref|ZP_06730952.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|21107662|gb|AAM36356.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|292604571|gb|EFF47946.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 324

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 15/196 (7%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------I 119
           + +S +++++ ++L +GY     +++  +    + +L+ +D L+GL N           I
Sbjct: 133 QGVSTIVVTL-VTLAVGYAFSLRMQDDRVH---LEELASLDALTGLPNRRMLERALTHQI 188

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                ++   S++  D+D+FK++ND +GH  GD  ++ L+  L      P  V R GGEE
Sbjct: 189 DQRQPHDRLNSLIILDLDHFKEVNDLYGHAAGDAALSDLATILRFEVREPHQVFRFGGEE 248

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F       S  E       LRK+I N       GP   IT+S G A    +        R
Sbjct: 249 FVVLLRAGSLAELEAATERLRKVIRNGL----RGPGGRITVSLGAARHDGETHWQDWFSR 304

Query: 240 ADQALYVAKKSGRNRV 255
           AD ALY+AK  GR+ V
Sbjct: 305 ADAALYLAKNGGRDSV 320


>gi|304312445|ref|YP_003812043.1| 7TM receptor family protein [gamma proteobacterium HdN1]
 gi|301798178|emb|CBL46400.1| 7TM receptor family protein [gamma proteobacterium HdN1]
          Length = 656

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 97/177 (54%), Gaps = 11/177 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQI 142
           +++L  +  ++ ++S ID LS L N   F          +Y E+  +S++ FD+D+FK+I
Sbjct: 462 VQKLASTNEQLERMSIIDELSQLHNRRYFNHKFETDFKTAYREQCSISVIMFDVDHFKKI 521

Query: 143 NDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND++GH VGD  IA ++  L   V      V R GGEEF      ++ Q A  +A ++R+
Sbjct: 522 NDHYGHLVGDYCIAHVAGILKKHVTRASDIVARYGGEEFVVVLNNTNAQGALHVAEEIRR 581

Query: 202 IIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +    +    G  I +T+S G+A     H + ++ ++  AD ALY AK++GRN++ 
Sbjct: 582 EVFTIPMQ-HDGMQIPMTVSGGVAAGIPHHYQGMAELLNLADNALYKAKQNGRNQIA 637


>gi|221369403|ref|YP_002520499.1| Diguanylate cyclase [Rhodobacter sphaeroides KD131]
 gi|221162455|gb|ACM03426.1| Diguanylate cyclase [Rhodobacter sphaeroides KD131]
          Length = 556

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 15/175 (8%)

Query: 96  SYNRISQLSRI----------DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQI 142
           S +R+++++R+          D L+GL N  A      +  E+   +++   DID+FKQI
Sbjct: 358 SRDRLAEITRLREAAEASARSDPLTGLGNRRALDRQFEAATEREGAIALALIDIDHFKQI 417

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH +GD+V+   + +L  V        R+GGEEF     G        L   L + 
Sbjct: 418 NDRLGHAMGDRVLQRFAVELSAVLPEGARAFRIGGEEFLTLCPGQDTGAVVGLLEKLARR 477

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
           +E     +  G    +T SAG+A R      +  +  RAD  LY AK+ GRN+++
Sbjct: 478 LETDP-PLRDGDLPRLTFSAGVAMRPGDGRSLGQLTARADARLYEAKRRGRNQIL 531


>gi|148554048|ref|YP_001261630.1| diguanylate cyclase [Sphingomonas wittichii RW1]
 gi|148499238|gb|ABQ67492.1| diguanylate cyclase [Sphingomonas wittichii RW1]
          Length = 415

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 26/174 (14%)

Query: 97  YNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y R+ +    D L+GLL+        +A + +    N  LS++  DID+FK +ND+ GH 
Sbjct: 247 YERLVERVGRDALTGLLDRGQLDAKGTAMLQAASRSNASLSLMMIDIDHFKSVNDSHGHV 306

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-------AAALGSSEQEAAILANDLRKI 202
           VGD VI  +++ +    G    + R GGEEFA         A+ S+E+    +A+     
Sbjct: 307 VGDGVIRTIAETIAAAKGEGAELFRYGGEEFALLCPLTLPDAVASAERIRVAVADSRHPE 366

Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E +           +T+S GIA    H      +I +AD ALY AK +GRNR+
Sbjct: 367 LERA-----------MTVSIGIAAFPAHARSFWQLIEKADAALYQAKAAGRNRI 409


>gi|91203009|emb|CAJ72648.1| hypothetical protein kustd1903 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 516

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 88/171 (51%), Gaps = 11/171 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +L+ ID L+ + NH  F + L +           +S+V FD+D+FK+ ND++GHP G
Sbjct: 338 RLEKLANIDGLTDVYNHRYFQNFLETEIRRSLRKKTSVSLVLFDVDHFKKFNDSYGHPAG 397

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++  L   +         + R GGEEF    + ++ ++AA +   LR++I  S I I 
Sbjct: 398 DFILKELCKLVKKNLRDYDLIARYGGEEFILVLVETAAEDAAEITEKLREVIA-SHIFID 456

Query: 212 SGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCFS 259
                 +T S G+A     +        I  AD+ALY +KK GRN++  ++
Sbjct: 457 DINEYKVTASFGVATMSPAKDEFKQGDFIDFADKALYESKKKGRNKITAYT 507


>gi|87120477|ref|ZP_01076371.1| putative two-component response regulator protein with GGDEF domain
           [Marinomonas sp. MED121]
 gi|86164120|gb|EAQ65391.1| putative two-component response regulator protein with GGDEF domain
           [Marinomonas sp. MED121]
          Length = 422

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 85/166 (51%), Gaps = 14/166 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
           N I  L+ +D L+GL N    +S   SY          + ++  DID+FKQINDN+GH V
Sbjct: 256 NTIRDLANLDALTGLYNRRFLMSEGESYYQNALAAQRPIHVLMLDIDHFKQINDNYGHLV 315

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDK++   S+ L   F   + V R GGEEF      S+ +E   +A  L  +  N     
Sbjct: 316 GDKLLEGFSELLRHCFSDSL-VARFGGEEFCILNDQSTVEE---IAARLSVLNTNLMEQG 371

Query: 211 SSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +   I IT S G ++E C  E +   +  AD  LY+AK +GRN+V
Sbjct: 372 FTSEKIKITYSGGVVSEVC--ENLEGAVKVADTRLYLAKNNGRNQV 415


>gi|120597466|ref|YP_962040.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|120557559|gb|ABM23486.1| diguanylate cyclase [Shewanella sp. W3-18-1]
          Length = 324

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 85/170 (50%), Gaps = 9/170 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +L  +  ++ +LS+ D L+ L N   +   L         YN+  S+V  DID FK IND
Sbjct: 144 QLKAANEQLERLSQTDGLTQLHNRRHWQLCLEHEFDLYARYNDIPSLVMIDIDNFKYIND 203

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GDKVI  ++  L          GR GGEEFA     +S ++A      LR+ I 
Sbjct: 204 TYGHVAGDKVIQHIAHILSQSLRETDCAGRYGGEEFAVVMPKTSGEDALHFTERLREKIA 263

Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
            S I +     I +T+S G+ E   H    S+ I  +D+ALY AK+ GRN
Sbjct: 264 ESTI-VYESLKIKVTVSLGVCEIGKHISSSSSWISCSDKALYEAKQKGRN 312


>gi|311108804|ref|YP_003981657.1| diguanylate cyclase [Achromobacter xylosoxidans A8]
 gi|310763493|gb|ADP18942.1| diguanylate cyclase, GGDEF domain protein 17 [Achromobacter
           xylosoxidans A8]
          Length = 413

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 80/177 (45%), Gaps = 26/177 (14%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+GL    A    L       ++   D+D FK  ND  GH VGD+V+  ++ QL  V 
Sbjct: 231 DELTGLPGRRALNERLQRMGRVYTLAMADVDNFKAFNDTHGHDVGDQVLRMVAAQLRRVP 290

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS----------- 215
           G      R GGEEF     G +  E+      +R+ IE  Q+ +   P+           
Sbjct: 291 GGGQAY-RYGGEEFTLVFPGKTAAESMPHLESVRRSIEAYQMRLRDKPARPKADQIGLRR 349

Query: 216 -----------IHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                      + +T+S G+AER    + P  ++I  ADQALY AK  GRN+V  +S
Sbjct: 350 RSGRDARSARPLRVTVSIGVAERSEALRAP-ESVIKAADQALYKAKDEGRNQVRAYS 405


>gi|262168543|ref|ZP_06036239.1| sensory box/GGDEF family protein [Vibrio cholerae RC27]
 gi|262023072|gb|EEY41777.1| sensory box/GGDEF family protein [Vibrio cholerae RC27]
          Length = 568

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 18/174 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS--IVFFDIDYFKQINDNFGH 148
           NR+ +LS  D L+ L N   F  ++         Y ++    +   DID+FK+IND FGH
Sbjct: 399 NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGH 458

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+  ++  +        F+ R+GGEEFA     +S +EA  + N +R       +
Sbjct: 459 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVR-------L 511

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +I+S     +T+S G+ + C     S    RAD ALY +K SGRN++   + +E
Sbjct: 512 HIASLHHQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTAME 563


>gi|237747413|ref|ZP_04577893.1| GGDEF domain-containing protein [Oxalobacter formigenes HOxBLS]
 gi|229378764|gb|EEO28855.1| GGDEF domain-containing protein [Oxalobacter formigenes HOxBLS]
          Length = 536

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 17/173 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL--GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            RI   +  D L+GL N   F   +    +  ++S+++ D+D FK IND FGH VGD  +
Sbjct: 362 QRILLSANTDALTGLYNRRFFYEKIEENRWKPQISLLYVDMDNFKLINDRFGHQVGDDAL 421

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-----EQEAAILANDLRKIIENSQI-- 208
             +SD L       M + R+GG+EF  A LG       E++AA +   L+K+ + +    
Sbjct: 422 KIVSDNLKTCCPEDM-ICRIGGDEFLIAVLGKCSETGLEEKAAWILRRLQKVFDGTDAMG 480

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            +S+   I  T+   +       PI  +I ++D AL  AK+SG+ R   +SD+
Sbjct: 481 ELSASIGIAYTLDQSL-------PIDQLIKQSDIALLSAKRSGKARYCLYSDM 526


>gi|114778330|ref|ZP_01453189.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain-like [Mariprofundus ferrooxydans PV-1]
 gi|114551432|gb|EAU53988.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain-like [Mariprofundus ferrooxydans PV-1]
          Length = 615

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 10/166 (6%)

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GL N   F       ++    +  + S++  D+D+FK  ND++GH +GD+V+ 
Sbjct: 449 ARTDVLTGLNNRRYFFELAELELARAKRHGNQFSLLMLDVDHFKLFNDSYGHHIGDRVLQ 508

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS- 215
            LS+  +         GR+GGEEFA     +    A  +A  LR  I  + + +    + 
Sbjct: 509 KLSEVCMHTLREIDLSGRIGGEEFAIMLPETRGDRAMEVAERLRLAIAGAPVLLEQQSTF 568

Query: 216 IHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +H T+S G+         +  ++ RAD ALY AK +GRN+ VC  D
Sbjct: 569 VHFTVSIGVTSLVAAGRQVDDLLKRADDALYAAKNAGRNQ-VCKKD 613


>gi|329924628|ref|ZP_08279643.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
 gi|328940462|gb|EGG36784.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
          Length = 331

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 12/167 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG----SYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
           +LS  D L+GL N   F   L      YN     LS+   DID+FK++ND +GH  GD+V
Sbjct: 163 ELSNTDKLTGLKNRRFFQEKLEEQLMQYNHNRIPLSLFIIDIDHFKRVNDTWGHGYGDEV 222

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  L         V R GGEEF      +  ++A   A  LR+ +++      S  
Sbjct: 223 LFNVATILKTHAIEGETVARYGGEEFVMILPETDAEKAKAGAERLRRAVQDFSWKTGS-- 280

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              +TIS GI         +T++ +AD+ALY +K++GRN+V  + D+
Sbjct: 281 ---MTISIGIITATPDANEATLLQKADEALYASKQNGRNQVTHYEDL 324


>gi|312142885|ref|YP_003994331.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Halanaerobium sp. 'sapolanicus']
 gi|311903536|gb|ADQ13977.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Halanaerobium sp. 'sapolanicus']
          Length = 363

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 95/172 (55%), Gaps = 14/172 (8%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHP 149
           +I++ +I+ L+  D L+GL N   FIS +   ++K    + I+  DI+  K IN+++G  
Sbjct: 18  YINFKKITHLNTHDNLTGLYNRKCFISEMKKLDKKENLPIGIIMTDINGLKLINNSYGQQ 77

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD++I   ++ L     +   +GR GG+EF    + + +QE  +   +++ +     IN
Sbjct: 78  IGDQIIIKSAELLKTTLKSNDIIGRWGGDEFIIIMINTHKQEVELYTREIKNL-----IN 132

Query: 210 ISSGPSIHITISAGIAER-CHKEPISTIIYRADQALY----VAKKSGRNRVV 256
           I     I I++SAG A +   +E I  +I +A+QAL+      +KS +N++V
Sbjct: 133 IEPQSKIDISLSAGSALKITAEEKILNLIQQAEQALFTDQLTKEKSSKNKIV 184


>gi|285017545|ref|YP_003375256.1| two-component system sensor-response regulator hybrid protein
            [Xanthomonas albilineans GPE PC73]
 gi|283472763|emb|CBA15268.1| hypothetical two-component system sensor-response regulator hybrid
            protein [Xanthomonas albilineans]
          Length = 1008

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/160 (33%), Positives = 77/160 (48%), Gaps = 12/160 (7%)

Query: 107  DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
            D L+GL N        +A +    + +  L +   DIDYFK+IND +GH +GD+V+  + 
Sbjct: 850  DALTGLPNRHTAEPYLTAALEQAMAASTTLCVALLDIDYFKKINDAYGHEIGDEVLRRVG 909

Query: 160  DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            D L V  G   F  R GGEEF     G   ++A    + LR       +    G  +  T
Sbjct: 910  DLLRVALGDNAFAARHGGEEFLLVLPGLDREQALACLDTLRGRFAALTLQDEDGCVVQFT 969

Query: 220  ISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256
             S G A  C    + T   ++ +AD+ LY AK  GR+RV+
Sbjct: 970  ASIGFA--CLSPTLRTRRDLLLQADKHLYQAKHEGRDRVI 1007


>gi|260219806|emb|CBA26707.1| hypothetical protein Csp_H39940 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 292

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 10/174 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           + L +    ++ L+  D L+GL N   FI               + +++  D+D+FK+IN
Sbjct: 108 EALVVQQQELAFLADHDALTGLYNRREFIRLAQMELLRATRVPCETAVIMVDLDFFKKIN 167

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHP GD V+   +  L         + RLGGEEF      +  + A  +A  LR  +
Sbjct: 168 DRYGHPGGDAVLKATAACLNQALRATDTLARLGGEEFIVLLPATGREGALQVATKLRDAV 227

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
            N+ I    G  I +T S G++    ++   +  I   AD+ALYVAK+ GR+RV
Sbjct: 228 RNTAIEFDGG-LIAVTASFGVSSVPAQKHGTVDAIYAAADRALYVAKQLGRDRV 280


>gi|257485508|ref|ZP_05639549.1| sensory box protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|320329233|gb|EFW85230.1| sensory box protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330987413|gb|EGH85516.1| sensory box protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331010684|gb|EGH90740.1| sensory box protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 729

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 29/214 (13%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--- 115
           +G   +L  ++  + ++ T  LL+   +   + +L  +  ++  L+  D L+GL N    
Sbjct: 245 HGAPLVLDISVEFITLNNTACLLM---NARDIGQLKTAQAQVQHLAYHDPLTGLPNRALL 301

Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
               S  +S L   N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         
Sbjct: 302 MDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 361

Query: 172 VGRLGGEEFAAAALG------SSEQEAAILANDLRKIIENSQI----NISSGPSIHITI- 220
           V RLGG+EF     G         Q+  +LA++LR+++          +   PSI I + 
Sbjct: 362 VARLGGDEFVVLICGLDGTRDEVTQQVRVLADNLRELLAEPMFLDGHRLQVTPSIGIVLI 421

Query: 221 -SAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
              G+A        + ++ RAD ALY AK SGRN
Sbjct: 422 PDDGLAP-------ADLLKRADIALYRAKDSGRN 448


>gi|225017148|ref|ZP_03706340.1| hypothetical protein CLOSTMETH_01073 [Clostridium methylpentosum
           DSM 5476]
 gi|224950067|gb|EEG31276.1| hypothetical protein CLOSTMETH_01073 [Clostridium methylpentosum
           DSM 5476]
          Length = 383

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 13/168 (7%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           S +D ++GL N   F +   +Y  K         SI+ FDID FK  ND+FGH  GD+ +
Sbjct: 203 SNLDEMTGLPNRRYF-NDFIAYKFKESARKSLPFSILIFDIDDFKYYNDSFGHLAGDECL 261

Query: 156 AFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           + +   ++  +    +F+ R GGEEF A   G   + A   A +L + I    +  + G 
Sbjct: 262 SRIGRVMLDYMIQQDLFIARFGGEEFIAVLAGEDARRAQEHAENLIQQIRKCPMPAAFGE 321

Query: 215 SIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           S H+T+S G A+  H         +I  AD ALY AK +G++R+  +S
Sbjct: 322 STHVTMSVGFAQMEHIGETASFHEVIKNADVALYRAKANGKDRIERYS 369


>gi|49186952|ref|YP_030204.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne]
 gi|167633559|ref|ZP_02391883.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0442]
 gi|177652686|ref|ZP_02935102.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0174]
 gi|218905180|ref|YP_002453014.1| putative sensory box/GGDEF family protein [Bacillus cereus AH820]
 gi|49180879|gb|AAT56255.1| sensory box/GGDEF family protein, putative [Bacillus anthracis str.
           Sterne]
 gi|167530965|gb|EDR93652.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0442]
 gi|172082021|gb|EDT67089.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0174]
 gi|218537493|gb|ACK89891.1| putative sensory box/GGDEF family protein [Bacillus cereus AH820]
          Length = 431

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ ID L+ + N   F   L +        NE ++++ FDID FK +ND +GH 
Sbjct: 262 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAVNDTYGHD 321

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 322 FGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 380

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             SG S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 381 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCVY 426


>gi|77360112|ref|YP_339687.1| GGDEF protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76875023|emb|CAI86244.1| conserved protein of unknown function ; putative GGDEF family
           protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 962

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 80/155 (51%), Gaps = 7/155 (4%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ + N  AF S L +        N+ L+I   DID+FK++ND + H VGDKVI  ++
Sbjct: 804 DQLTDMPNRRAFDSWLAANFATYKQQNKILAIAIMDIDHFKRVNDGWSHIVGDKVICEIA 863

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF       +  EA ++   LR+ I N+  ++ +     +T
Sbjct: 864 KILKSHCEGEQQVARWGGEEFTLVFPNKTAAEAKLMCELLREEIANNDFSVIAAGLHQVT 923

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            S G+++  + +    ++  ADQALY AK  GRNR
Sbjct: 924 ASFGVSDSNNIDDYDRLLSGADQALYKAKNGGRNR 958


>gi|158318760|ref|YP_001511268.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EAN1pec]
 gi|158114165|gb|ABW16362.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EAN1pec]
          Length = 1327

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 8/163 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +R+   +R D L+GL N S F   L S          ++++ D+D FK IND+ GH  GD
Sbjct: 459 DRLGHQARHDLLTGLANRSGFGDRLASALAVSSESSCAVLYLDLDGFKPINDSLGHAAGD 518

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+A +  +L  +        RLGG+EFA     S    A+++A+  R I   ++  I  
Sbjct: 519 RVLAIIGARLAALLREGDLASRLGGDEFAMLLRDSDLATASLVAD--RVIRAVAEKIILE 576

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254
           G  + +  S GIA  R  +     +I+ AD A+Y AK+ G +R
Sbjct: 577 GECVQVGASVGIAMGRPGRSRADELIHAADTAMYAAKRDGGSR 619



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 11/162 (6%)

Query: 107  DCLSGLLNHSAFISSLGSYNE------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            D L+GL N +AF   L +  E        +++F D+D FK +ND FGH VGD V+  +  
Sbjct: 1167 DPLTGLPNRAAFDRHLAAVAEHEQAGTSFAVLFIDLDNFKPVNDRFGHAVGDDVLRVIGA 1226

Query: 161  QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHIT 219
            ++         V RLGG+EFA       E +  ++     +I+E S+  I+ +G +I + 
Sbjct: 1227 RIGAASRKTDMVSRLGGDEFAVLV---DEADDDLVCAISARILETSRQPIALAGTTIALG 1283

Query: 220  ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + GIA  R   +   T +  AD A+Y AK++GR+R   F+D
Sbjct: 1284 ATIGIALCRAGIDDPETALRNADNAMYRAKRAGRDRYALFTD 1325


>gi|269139399|ref|YP_003296100.1| hypothetical protein ETAE_2054 [Edwardsiella tarda EIB202]
 gi|267985060|gb|ACY84889.1| hypothetical protein ETAE_2054 [Edwardsiella tarda EIB202]
 gi|304559295|gb|ADM41959.1| hypothetical protein ETAF_1853 [Edwardsiella tarda FL6-60]
          Length = 351

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 3/156 (1%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           QL++ +   GL      I  L        I   DID FKQIND +GH  GD+V+  ++  
Sbjct: 198 QLTQTNNRQGLQQQ---ILRLEHSRSACCIAMIDIDNFKQINDRYGHLCGDRVLTAVAAI 254

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                    ++ R GGEEF     G + + A      +R+ I ++ I +     I +T S
Sbjct: 255 ASQTLQPRDYMARFGGEEFVILFPGKTLERANARCEQIRQAICSTPIYLCHNQQIRVTAS 314

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            G++    ++ +   I RAD ALY AK+ G+NRV C
Sbjct: 315 FGLSYFDGRDSLQQAIARADGALYRAKRRGKNRVEC 350


>gi|288940706|ref|YP_003442946.1| GAF sensor-containing diguanylate cyclase [Allochromatium vinosum
           DSM 180]
 gi|288896078|gb|ADC61914.1| diguanylate cyclase with GAF sensor [Allochromatium vinosum DSM
           180]
          Length = 364

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 93/181 (51%), Gaps = 11/181 (6%)

Query: 78  ISLLLGYISGSILKELFISY-NRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKL 129
           I  LL   + +I   L  S+ NR  QL R D L+GL N  A       +++    ++  L
Sbjct: 170 IEGLLALAAPAIQNALRFSHVNR--QLER-DPLTGLGNRRALSVQGEQWLADSVRHHHPL 226

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D FK +ND +GHPVGD+V+  +++ L+ V  T     RLGG+EF      +  
Sbjct: 227 SMLALDLDRFKAVNDTYGHPVGDRVLCRVAETLMAVTRTADLCVRLGGDEFVVLLPETGL 286

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           + A   A  +R  +    I   SG  I I++S G+A       +  + ++AD ALY AK+
Sbjct: 287 RAALDCAERIRSALAQHCITTESGSCIAISVSIGVATLQPDMSLDQLYHQADAALYAAKQ 346

Query: 250 S 250
           +
Sbjct: 347 A 347


>gi|256828463|ref|YP_003157191.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
 gi|256577639|gb|ACU88775.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
          Length = 280

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 12/163 (7%)

Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L  +D L+GL N   F  ++         +   L++   D+D FK +ND +GHP GD VI
Sbjct: 83  LQGLDPLTGLANRRGFDQTMVMEVERSSRFKTPLTLCIMDLDNFKAVNDTYGHPCGDDVI 142

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L+          R+GGEEFA    G+    A  L   ++ II+ ++I       
Sbjct: 143 KTVASILLNEMRMIDTAARIGGEEFALLLPGTGLARALKLLQRIQSIIQATRITCGDA-R 201

Query: 216 IHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + +T+S G+A    +   +P+  ++  AD+ALY AK++G+NR+
Sbjct: 202 LTMTMSMGVASYRGKLTPDPVK-LLAEADKALYRAKRTGKNRI 243


>gi|167562304|ref|ZP_02355220.1| GGDEF domain protein [Burkholderia oklahomensis EO147]
          Length = 454

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 9/176 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L+EL  +  ++  L+  D L+G  N   FI  + +            S++  D+D FK I
Sbjct: 279 LQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQAEIARAKRDGTAFSLLALDLDNFKTI 338

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           NDN+GH VGD V+     Q +        + R+GGEEF           A+ +A  +R  
Sbjct: 339 NDNYGHQVGDVVLRNFVRQCLTAIRPYDHIARVGGEEFMVLLPRMLADAASGIAERVRTS 398

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           I N+   I  G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV 
Sbjct: 399 IANASFGI-DGKHTPVTVSIGVSQYGRDGDTVDEILSVADKLLYRAKHEGRNRVVA 453


>gi|126463805|ref|YP_001044918.1| diguanylate cyclase [Rhodobacter sphaeroides ATCC 17029]
 gi|126105616|gb|ABN78146.1| diguanylate cyclase [Rhodobacter sphaeroides ATCC 17029]
          Length = 562

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 15/175 (8%)

Query: 96  SYNRISQLSRI----------DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQI 142
           S +R+++++R+          D L+GL N  A      +  E+   +++   DID+FKQI
Sbjct: 364 SRDRLAEITRLREAAEASARSDPLTGLGNRRALDRQFEAATEREGAIALALIDIDHFKQI 423

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH +GD+V+   + +L  V        R+GGEEF     G        L   L + 
Sbjct: 424 NDRLGHAMGDRVLQRFAVELSAVLPEGARAFRIGGEEFLTLCPGQDTGAVVDLLEKLARR 483

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
           +E +   +  G    +T SAG+A R      +  +  RAD  LY AK+ GRN+++
Sbjct: 484 LE-ADPPLRDGDLPRLTFSAGVAMRPGDGRSLGQLTARADARLYEAKRRGRNQIL 537


>gi|289670563|ref|ZP_06491638.1| putative sensor protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 793

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 10/172 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           +EL  +   +S  +  D L+GLLN +  +++L             L++V  D+D+FK +N
Sbjct: 612 RELEAARAELSLKATHDELTGLLNRAGILAALREMLLHAARSGRPLAVVLIDLDHFKLVN 671

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD V+A +  ++  +      +GR GGEE  A   G +      L    R I 
Sbjct: 672 DQHGHLAGDAVLAGVGRRVDTLVRGDDRIGRYGGEELLALLPGLNLDATHRLEALHRDIC 731

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  I+   G  +H+T S G+A     E +  ++ RAD ALY AK+SGRNR+
Sbjct: 732 GDYPID---GGWLHVTCSIGVAWFQPGETLEQLLARADAALYSAKRSGRNRI 780


>gi|222033694|emb|CAP76435.1| Cellulose synthesis regulatory protein [Escherichia coli LF82]
          Length = 564

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 9/185 (4%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           LL  Y+   ++  +++  + +   +  D L+ L N  A             ++    S++
Sbjct: 374 LLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAKLCQTHQHPFSVI 433

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G++  +A
Sbjct: 434 QVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEEFCVILPGANLTQA 493

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKS 250
           A +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+AK++
Sbjct: 494 AEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQA 553

Query: 251 GRNRV 255
           GRNRV
Sbjct: 554 GRNRV 558


>gi|16331713|ref|NP_442441.1| PleD-like-protein [Synechocystis sp. PCC 6803]
 gi|1001267|dbj|BAA10511.1| slr0829 [Synechocystis sp. PCC 6803]
          Length = 829

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 87/173 (50%), Gaps = 11/173 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++SQL  ID L+ + N   F          L      +S++ FDID FK  ND +GHP G
Sbjct: 648 KLSQLIDIDGLTKIANRRCFNVRIKQEWRRLSRAQVPISLIMFDIDCFKNYNDRYGHPEG 707

Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D  +  ++         P   V R GGEEFA     +  + A ++A  + + I    I  
Sbjct: 708 DLCLIRVAQAARKAASRPADLVARFGGEEFAVLLPETDTKGAIMVAEKIIQAISQLAIAH 767

Query: 211 SSGP-SIHITISAGIAERC-HKEPIS-TIIYRADQALYVAKKSGRNRVVCFSD 260
            + P S  ITIS GI  +   KE IS T+I +AD ALY AK+ GRN+ V +++
Sbjct: 768 EASPISGQITISLGIGTQFPSKELISRTLIKQADMALYEAKRRGRNQYVVWTE 820


>gi|30264120|ref|NP_846497.1| sensory box/GGDEF family protein, putative [Bacillus anthracis str.
           Ames]
 gi|42783158|ref|NP_980405.1| sensory box/GGDEF family protein, putative [Bacillus cereus ATCC
           10987]
 gi|47529556|ref|YP_020905.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|65321436|ref|ZP_00394395.1| COG2199: FOG: GGDEF domain [Bacillus anthracis str. A2012]
 gi|165871160|ref|ZP_02215810.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0488]
 gi|167639495|ref|ZP_02397766.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0193]
 gi|170687199|ref|ZP_02878417.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0465]
 gi|170705667|ref|ZP_02896130.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0389]
 gi|190565880|ref|ZP_03018799.1| putative sensory box/GGDEF family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|196034843|ref|ZP_03102250.1| putative sensory box/GGDEF family protein [Bacillus cereus W]
 gi|206977366|ref|ZP_03238262.1| putative sensory box/GGDEF family protein [Bacillus cereus
           H3081.97]
 gi|217961536|ref|YP_002340106.1| putative sensory box/GGDEF family protein [Bacillus cereus AH187]
 gi|222097494|ref|YP_002531551.1| sensory box/ggdef family protein, putative [Bacillus cereus Q1]
 gi|227816822|ref|YP_002816831.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           CDC 684]
 gi|228916684|ref|ZP_04080249.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929093|ref|ZP_04092120.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935364|ref|ZP_04098184.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229123567|ref|ZP_04252762.1| Sensory box/GGDEF family protein [Bacillus cereus 95/8201]
 gi|229140780|ref|ZP_04269325.1| Sensory box/GGDEF family protein [Bacillus cereus BDRD-ST26]
 gi|229198168|ref|ZP_04324877.1| Sensory box/GGDEF family protein [Bacillus cereus m1293]
 gi|229604454|ref|YP_002868344.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0248]
 gi|254683812|ref|ZP_05147672.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721647|ref|ZP_05183436.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A1055]
 gi|254736158|ref|ZP_05193864.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           Western North America USA6153]
 gi|254744048|ref|ZP_05201731.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           Kruger B]
 gi|254754173|ref|ZP_05206208.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           Vollum]
 gi|254758137|ref|ZP_05210164.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           Australia 94]
 gi|301055541|ref|YP_003793752.1| putative sensory box/GGDEF family protein [Bacillus anthracis CI]
 gi|30258765|gb|AAP27983.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           Ames]
 gi|42739086|gb|AAS43013.1| sensory box/GGDEF family protein, putative [Bacillus cereus ATCC
           10987]
 gi|47504704|gb|AAT33380.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           'Ames Ancestor']
 gi|164713079|gb|EDR18606.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0488]
 gi|167512554|gb|EDR87929.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0193]
 gi|170129207|gb|EDS98071.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0389]
 gi|170668816|gb|EDT19561.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0465]
 gi|190562799|gb|EDV16765.1| putative sensory box/GGDEF family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|195992382|gb|EDX56343.1| putative sensory box/GGDEF family protein [Bacillus cereus W]
 gi|206744357|gb|EDZ55768.1| putative sensory box/GGDEF family protein [Bacillus cereus
           H3081.97]
 gi|217066991|gb|ACJ81241.1| putative sensory box/GGDEF family protein [Bacillus cereus AH187]
 gi|221241552|gb|ACM14262.1| sensory box/GGDEF family protein, putative [Bacillus cereus Q1]
 gi|227006187|gb|ACP15930.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           CDC 684]
 gi|228585328|gb|EEK43437.1| Sensory box/GGDEF family protein [Bacillus cereus m1293]
 gi|228642570|gb|EEK98856.1| Sensory box/GGDEF family protein [Bacillus cereus BDRD-ST26]
 gi|228659702|gb|EEL15347.1| Sensory box/GGDEF family protein [Bacillus cereus 95/8201]
 gi|228824292|gb|EEM70104.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830383|gb|EEM75993.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842871|gb|EEM87954.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268862|gb|ACQ50499.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0248]
 gi|300377710|gb|ADK06614.1| possible sensory box/GGDEF family protein [Bacillus cereus biovar
           anthracis str. CI]
 gi|324327950|gb|ADY23210.1| putative sensory box/GGDEF family protein [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 430

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ ID L+ + N   F   L +        NE ++++ FDID FK +ND +GH 
Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAVNDTYGHD 320

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 321 FGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 379

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             SG S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 380 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCVY 425


>gi|241764615|ref|ZP_04762630.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
 gi|241365936|gb|EER60566.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
          Length = 398

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 76/156 (48%), Gaps = 7/156 (4%)

Query: 107 DCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GLLN    +  L +Y          ++  DID+FK IND +GH VGD V+  +++ 
Sbjct: 226 DPLTGLLNRRGLMDGLDAYFRARPAASAHLLIVDIDHFKSINDTWGHKVGDLVLCRVAEV 285

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITI 220
           L           RLGGEEF   A  +    A  LA  +R+ IE+ Q+  S     +  T 
Sbjct: 286 LRSTARRGDLTCRLGGEEFVVVAFDTDSIGATQLAERMREAIEDRQMQDSGLTEPVRCTA 345

Query: 221 SAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255
           + G++E           +++AD ALY  K SGRN V
Sbjct: 346 TIGVSEGFASAAAFDETLHQADAALYRGKMSGRNCV 381


>gi|218679410|ref|ZP_03527307.1| hypothetical protein RetlC8_11216 [Rhizobium etli CIAT 894]
          Length = 238

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 72/141 (51%), Gaps = 2/141 (1%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           +   LS + FDID+FK++ND  GH  GD+V+  ++             GR+GGEEFA   
Sbjct: 38  HQHDLSCIVFDIDHFKRVNDTHGHAAGDEVLKAVAAICKTTLRVGDLFGRIGGEEFAVVL 97

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQA 243
                + A  +A  LR  I +  I    G  +H+T S G +      + I T++ +AD A
Sbjct: 98  PHVDREGAVAVAEKLRAAIASQPIRGDHGV-LHVTASLGSSTLSIVSKEIETLLAQADAA 156

Query: 244 LYVAKKSGRNRVVCFSDIENN 264
           +Y AK  GRNR V +S I  +
Sbjct: 157 MYQAKHGGRNRCVSWSSIHAD 177


>gi|152982370|ref|YP_001353570.1| hypothetical protein mma_1880 [Janthinobacterium sp. Marseille]
 gi|151282447|gb|ABR90857.1| Hypothetical protein mma_1880 [Janthinobacterium sp. Marseille]
          Length = 389

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 78/165 (47%), Gaps = 17/165 (10%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+ +D L+G LN  A++   G        Y + + ++  D+DYFKQIND  GH VGD
Sbjct: 220 LERLATLDGLTGALNRRAWLLQSGIELAGSVRYRQPIGLLLLDLDYFKQINDTHGHAVGD 279

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +      L  V  T     R GGEEF    L      A++ A D R      Q     
Sbjct: 280 RALQLFVTGLRTVSRTGDLFCRYGGEEF--CVLLKCADLASVTAYDQRM----RQWLAQH 333

Query: 213 GPS---IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
            P      ++ SAGI  R H  + I T++ RAD ALY AK  GR 
Sbjct: 334 SPQELGFKLSYSAGITMREHDGDTIDTMLQRADVALYEAKSQGRG 378


>gi|145300858|ref|YP_001143699.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853630|gb|ABO91951.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 471

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 95/177 (53%), Gaps = 10/177 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148
           EL  +  R+  L+  D ++G+LN  AF+  L    +  +  +++ FDID FK IND+FGH
Sbjct: 289 ELVRANARLESLANTDSMTGILNRRAFLPLLAERLASGQASALLLFDIDRFKGINDHFGH 348

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+VIA L++++  V  +     R+GGEEF  +   +        A+ + + +   ++
Sbjct: 349 GVGDEVIAALAERVEAVLPSDALFARIGGEEFCISLPMADMAALQGWASRIGREVSAQKL 408

Query: 209 NISSGPSIHITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRN--RVVCFSD 260
             S+G  + ++IS G   +      E  + ++ +AD+ +Y +K  GRN  +  C+ +
Sbjct: 409 QTSAG-ELGLSISTGAVWVPSGVRAES-TGLLQQADKLMYGSKSRGRNTWQAACYEE 463


>gi|89098948|ref|ZP_01171828.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89086352|gb|EAR65473.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 574

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 95/184 (51%), Gaps = 25/184 (13%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQINDNFG 147
           +Y R  + S    L+ L N+  F   LG             LS++  DID+FK +ND FG
Sbjct: 393 NYERTKENSERCALTKLYNYRYFDVLLGEEFIRMESGKRSVLSLIILDIDHFKSVNDTFG 452

Query: 148 HPVGDKVIAFLSDQLVVV---FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           H  G++++  L+++L ++   +GT   V R GGEEF      + +QEA  LA  +R  I 
Sbjct: 453 HQSGNEILIELAERLSLLTEPYGT---VARYGGEEFVVLLPDAEKQEALELAEVIRLAIA 509

Query: 205 NSQINIS-------SGPSIHITISAGIAERC--HKEPISTIIYRADQALYV-AKKSGRNR 254
                I+       S  S+ IT S G+A       +P++ +I  AD+ALYV AK++GRNR
Sbjct: 510 TQPFTITQHMDGDGSRLSVSITASIGVASAPVDADDPLA-LIRHADRALYVGAKRAGRNR 568

Query: 255 VVCF 258
           V  +
Sbjct: 569 VAEY 572


>gi|116053637|ref|YP_793964.1| GGDEF domain-containing protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588858|gb|ABJ14873.1| putative GGDEF domain protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 671

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 79/161 (49%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q +  D L+GL N +A    L     +       L +   DID+FK+IND+FGH  GDKV
Sbjct: 509 QKALTDPLTGLPNRAALSERLEQEVARRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDKV 568

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++ +L        F+ R GGEEF      +S +    L   LR  I     +    P
Sbjct: 569 LKIIAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHFKGEP 628

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT SAGI      E    +  RADQALY AK++GR+R+
Sbjct: 629 -LSITCSAGITAFEGNEAGEVVFERADQALYRAKRAGRDRL 668


>gi|47565926|ref|ZP_00236965.1| sensory box/GGDEF family protein [Bacillus cereus G9241]
 gi|47557206|gb|EAL15535.1| sensory box/GGDEF family protein [Bacillus cereus G9241]
          Length = 430

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ ID L+ + N   F   L +        NE ++++ FDID FK +ND +GH 
Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAVNDTYGHD 320

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 321 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 379

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             SG S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 380 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCVY 425


>gi|317407207|gb|EFV87193.1| hypothetical protein HMPREF0005_05644 [Achromobacter xylosoxidans
           C54]
          Length = 587

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 78/163 (47%), Gaps = 9/163 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++  D L+GLLN  AF S L          +  L+ + FDID FK IND  GH  GD+ +
Sbjct: 420 MAETDFLTGLLNRRAFESRLEQALAQWRGTDAVLAFILFDIDDFKGINDTHGHASGDEAL 479

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++      +     V R+GGEEFA      +   A   A  +R+ I  +++    G  
Sbjct: 480 KTVAGLCRQTWRQADVVARVGGEEFAVLCHVGAADHAVQAAERMRRRIAQARVTAQDGAV 539

Query: 216 IHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVV 256
             +T S G+A    +  E    +  RAD+ LY AK  G+NRVV
Sbjct: 540 FTLTASFGVAYASWRNAEAADALFRRADELLYRAKMDGKNRVV 582


>gi|194472518|ref|ZP_03078502.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205358613|ref|ZP_02657969.2| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194458882|gb|EDX47721.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205332962|gb|EDZ19726.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 304

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 126/276 (45%), Gaps = 22/276 (7%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58
           F  IW  H      +   + F  +  S+   +FI ++ F ANI  F +  L P       
Sbjct: 28  FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 87

Query: 59  ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112
                GL  + +  L +V I+I   +   Y   +  ++ +L      ++ LS +D L+GL
Sbjct: 88  NGNEQGLRILYLLALPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 147

Query: 113 LNHSAFISSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +       +  ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 148 YNRRGLQNRLDTLQVPGCHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 207

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      +  Q+A   A  +R+ + + +I      S+  ++T+S GIA 
Sbjct: 208 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 267

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              +  I   I +AD+ALY AK  GRN ++   D+ 
Sbjct: 268 LTDRN-IGDAIEKADKALYEAKHLGRNHILVSDDMR 302


>gi|28898411|ref|NP_798016.1| putative GGDEF family protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260876573|ref|ZP_05888928.1| response regulator [Vibrio parahaemolyticus AN-5034]
 gi|260895068|ref|ZP_05903564.1| response regulator [Vibrio parahaemolyticus Peru-466]
 gi|260900922|ref|ZP_05909317.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|28806628|dbj|BAC59900.1| putative GGDEF family protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308085962|gb|EFO35657.1| response regulator [Vibrio parahaemolyticus Peru-466]
 gi|308093590|gb|EFO43285.1| response regulator [Vibrio parahaemolyticus AN-5034]
 gi|308110696|gb|EFO48236.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 658

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 77/162 (47%), Gaps = 11/162 (6%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAF 157
           +RID L+  LN +A I ++ S   K        +   D+D FK IND +GHP GD V+  
Sbjct: 483 ARIDSLTCALNRTAIIETIKSQTSKTHQEMRYVLALIDLDNFKAINDTYGHPTGDLVLKH 542

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +   + V      ++GRLGGEEF        E +       L K I   QI       + 
Sbjct: 543 VCQSIRVKLNKGEYIGRLGGEEFVLLLKNVDEIDVPFRVQSLHKTISEKQIKTERNEDLR 602

Query: 218 ITISAGIAERCHKEPISTI--IYR-ADQALYVAKKSGRNRVV 256
           +T  A +A      P++    +Y   DQALY AK++G+N VV
Sbjct: 603 VT--ASLAYLSTSMPLTNFDELYSILDQALYQAKRNGKNAVV 642


>gi|325923977|ref|ZP_08185566.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           gardneri ATCC 19865]
 gi|325545560|gb|EGD16825.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           gardneri ATCC 19865]
          Length = 507

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 94/182 (51%), Gaps = 24/182 (13%)

Query: 96  SYNRISQLSRI---DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145
           S NR+  L+     D L+G+ N     ++L    E        LSI F D+D FK++ND+
Sbjct: 317 SENRMRHLAEQASRDALTGVFNRHQLGTALEHEFELASRQSWPLSIAFIDLDDFKRVNDS 376

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH +GD+V+   +  L  +  T   V R GGEEF    L ++  +AA++  + R ++E 
Sbjct: 377 HGHLIGDEVLRNFAQTLQRMVRTSDLVARYGGEEF-LVILPNTTADAALMVIE-RILVET 434

Query: 206 SQI---NISSGPSIHITISAGIAERCHK------EPISTIIYRADQALYVAKKSGRNRVV 256
           ++     + SGP +HIT SAG+A   H       E I  ++  AD  LY +K  GRNRV 
Sbjct: 435 ARTPMAQLQSGP-LHITFSAGLA--THGGGGRQFESIEHLLQAADSTLYRSKHRGRNRVT 491

Query: 257 CF 258
            +
Sbjct: 492 AY 493


>gi|192360831|ref|YP_001982921.1| EAL domain-containing protein [Cellvibrio japonicus Ueda107]
 gi|190686996|gb|ACE84674.1| EAL domain protein [Cellvibrio japonicus Ueda107]
          Length = 798

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 87/167 (52%), Gaps = 11/167 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S  +I  L+  D L+GL N           I+ +    EKL I+F D+D FK +ND+ GH
Sbjct: 351 SRAQIEFLAHHDALTGLPNRILLNDRLEMAITQVRRQGEKLGILFIDLDRFKNVNDSLGH 410

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+++   + +L     T   V RLGG+EF    L    +    LA+   K+ E  Q+
Sbjct: 411 GVGDQILQEAAKRLTANVRTGDTVSRLGGDEF--VVLFPRVRTEGNLADLTIKLREQLQL 468

Query: 209 NIS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
             +  G S+HIT S GIA      E  +T+I  AD A+Y+AK+ GRN
Sbjct: 469 PYTVDGISLHITPSIGIAVYPDDGEDPNTLIKNADAAMYLAKEKGRN 515


>gi|163759328|ref|ZP_02166414.1| putative transcription regulator (with tandem n-terminal response
           regulator domains) protein [Hoeflea phototrophica
           DFL-43]
 gi|162283732|gb|EDQ34017.1| putative transcription regulator (with tandem n-terminal response
           regulator domains) protein [Hoeflea phototrophica
           DFL-43]
          Length = 457

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 9/159 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N     + L +  E+       LS++  DID+FK IND  GH  GD ++   +
Sbjct: 295 DALTGLNNRRYLDTHLNTLVERSAKRDRPLSVLITDIDHFKSINDVHGHEGGDDILRDFA 354

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHI 218
            ++           R GGEEF      ++   AA +A  LR  +  +   ++ SG ++ +
Sbjct: 355 RRVRGAVRGADLACRYGGEEFVVIMPDTTLDVAAQIAERLRDAVAAAPFKVAASGANVTL 414

Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T S GIA      E  ++++ RADQALY AK SGRNRVV
Sbjct: 415 TTSVGIAALEPSGEDSASLLRRADQALYQAKSSGRNRVV 453


>gi|152970346|ref|YP_001335455.1| hypothetical protein KPN_01794 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150955195|gb|ABR77225.1| hypothetical protein KPN_01794 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 418

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 79/161 (49%), Gaps = 12/161 (7%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GLLN   F   + +         ++  DID+FK IND  GH  GD+V+  LS  L 
Sbjct: 256 DPLTGLLNRREFHRLVEAPTFIPRGYCLLLIDIDHFKSINDIHGHQKGDEVLLVLSRILE 315

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   + R GGEEF      S    A ILA  +R+ +   Q       ++ +T+S G
Sbjct: 316 TSVDREDKIYRWGGEEFLLFLPHSPIGRALILAEGIRQAVSEYQ-------TLSVTVSIG 368

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRV--VCFSDIE 262
           +AE    E +  +  R D+ALY AK  GRNRV  + F ++E
Sbjct: 369 VAEHHDGETVDQLFSRVDKALYAAKNDGRNRVSRMPFENVE 409


>gi|90411738|ref|ZP_01219747.1| hypothetical protein P3TCK_17832 [Photobacterium profundum 3TCK]
 gi|90327300|gb|EAS43664.1| hypothetical protein P3TCK_17832 [Photobacterium profundum 3TCK]
          Length = 395

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 103/208 (49%), Gaps = 16/208 (7%)

Query: 56  TPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH 115
           T +Y       E L++  +   ++L++ +   S L  L     R+ + + +D L+G+ N 
Sbjct: 168 TDYYAGRLFAPEYLAIYWLQSVLALMVIWSQVSKLHMLM----RLYRQAILDPLTGIYNR 223

Query: 116 SAFISSLGSYN--------EKLSIVFFDIDYFKQINDNFGHPVGDKVIA-FLSDQLVVVF 166
              +  LG  N        E  S++ FDID FK+IND +GH VGDKV+  F S     + 
Sbjct: 224 RMLLQ-LGKKNMLECELKGEPFSVLLFDIDKFKRINDTWGHSVGDKVLTGFTSFVQSKIR 282

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIA 225
            T +F GR GGEEF           A  ++N +   I + ++ I+    S+ IT   GI+
Sbjct: 283 KTDLF-GRYGGEEFVLFLPDCPPDTAIKISNRMLIAIRDLKLPINIDNQSLSITTCIGIS 341

Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRN 253
                + +++++ RAD ALY  K SGR+
Sbjct: 342 TYSENDTLASMLERADLALYKCKHSGRD 369


>gi|328468977|gb|EGF39937.1| putative GGDEF family protein [Vibrio parahaemolyticus 10329]
          Length = 658

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 77/162 (47%), Gaps = 11/162 (6%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAF 157
           +RID L+  LN +A I ++ S   K        +   D+D FK IND +GHP GD V+  
Sbjct: 483 ARIDSLTCALNRTAIIETIKSQTSKTHQEMRYVLALIDLDNFKAINDTYGHPTGDLVLKH 542

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +   + V      ++GRLGGEEF        E +       L K I   QI       + 
Sbjct: 543 VCQSIRVKLNKGEYIGRLGGEEFVLLLKNVDEIDVPFRVQSLHKTISEKQIKTERNEDLR 602

Query: 218 ITISAGIAERCHKEPISTI--IYR-ADQALYVAKKSGRNRVV 256
           +T  A +A      P++    +Y   DQALY AK++G+N VV
Sbjct: 603 VT--ASLAYLSTSMPLTNFDELYSILDQALYQAKRNGKNAVV 642


>gi|311696110|gb|ADP98983.1| two-component response regulator [marine bacterium HP15]
          Length = 537

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 79/155 (50%), Gaps = 11/155 (7%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +  L           + L     DIDYFK++ND FGHP+GD+V+  LS
Sbjct: 379 DSLTGLFNHTHTLHLLDQEIVRARQKEQPLCFAMIDIDYFKKVNDTFGHPIGDRVLRSLS 438

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218
             L         +GR GGEEFA     +   +A  + N++R+    S++   +G    ++
Sbjct: 439 MFLKQRLRKTDHIGRYGGEEFAIILPNTRPSDARNVLNEIRERF--SELQQPAGDREFNV 496

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           T S GIA          +  RAD+ALY +K+ GRN
Sbjct: 497 TFSCGIAA-WDDNTSQALCERADRALYSSKELGRN 530


>gi|288957137|ref|YP_003447478.1| oxygen sensor diguanylate cyclase/c-di-GMP phosphodiesterase
           [Azospirillum sp. B510]
 gi|288909445|dbj|BAI70934.1| oxygen sensor diguanylate cyclase/c-di-GMP phosphodiesterase
           [Azospirillum sp. B510]
          Length = 750

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 100/188 (53%), Gaps = 19/188 (10%)

Query: 93  LFISYNR----ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQ 141
           L I ++R    I++L+  D L+GL N        +A ++  G   + ++++F DID FK 
Sbjct: 287 LAIEHDRARAEINRLAYFDTLTGLPNRQLLADRATAALALAGRTRQSVTVIFLDIDRFKT 346

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND+ GH VGD+++  ++ +L  +F     + RLGG+EF A   G     A++LA    +
Sbjct: 347 VNDSLGHAVGDRLLVEVTARLRPLFIEGDTLARLGGDEFVALLPGCDAAHASLLAE---R 403

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCF 258
           ++    + ++    + +T +A I    H +      T++ +AD A+Y AK++GRNR   F
Sbjct: 404 VLAALSVPMTVA-DLTLTPTASIGIAVHPDDGLDFDTLLRQADAAMYRAKQAGRNRCHFF 462

Query: 259 -SDIENNT 265
            SDI    
Sbjct: 463 RSDINEQA 470


>gi|227327722|ref|ZP_03831746.1| hypothetical protein PcarcW_10466 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 552

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 80/163 (49%), Gaps = 10/163 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D ++ LLN     S L  +    +  +++  DID FK+IND  GH VGD VI +LS  + 
Sbjct: 394 DPMTELLNRRGLDSVLRYWQMGQKSFAVIALDIDRFKRINDTHGHDVGDNVIRYLSQLIR 453

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   + R GGEEF      +S   A  +A  LR+ ++ S I +      +ITIS G
Sbjct: 454 TSSRDADILCRSGGEEFLILLPETSLDVALSIAERLRQRVQESTIPVVG----NITISLG 509

Query: 224 IA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +A         PI      AD+ALY AK+ GRNRVV  S  E 
Sbjct: 510 VALWEPGVSDMPIDRTFKLADEALYQAKQEGRNRVVSASGSEQ 552


>gi|34498916|ref|NP_903131.1| hypothetical protein CV_3461 [Chromobacterium violaceum ATCC 12472]
 gi|34332886|gb|AAQ61122.2| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 420

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 84/179 (46%), Gaps = 8/179 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSA----FISSLGSYNE---KLSIVFFDIDYFKQI 142
           ++EL  +    S   + D L+G  N       F   +G        LSI   D+D FKQ+
Sbjct: 241 IRELETALEAASAKVKEDQLTGAYNRRGLAEYFQREIGRAERTAAPLSIALIDVDNFKQL 300

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  + +L D +         V R GGEEF      + E EA      L++ 
Sbjct: 301 NDRYGHLAGDDALKYLVDTIKHSLRPADIVARFGGEEFVILMPDTPETEAVQTVQRLQRE 360

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +  +   +++   + IT SAG+A     E  S ++ RAD A+Y AK +G+NRV    D+
Sbjct: 361 LTKT-FFLANNDKLLITFSAGVARWHLGEQESDVLERADHAMYQAKINGKNRVCSAEDM 418


>gi|21243537|ref|NP_643119.1| hypothetical protein XAC2810 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109102|gb|AAM37655.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 356

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 83/163 (50%), Gaps = 13/163 (7%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GL N  AF  +L +  E+       LS+   D+D+FK +ND  GH  GD V+ 
Sbjct: 200 TRTDPLTGLPNRRAFAVALAAATEQTRAVGQPLSVALLDVDHFKTVNDVHGHDQGDAVLR 259

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            LS  L         + R GGEEF      ++  +A +    LR+ +    I      ++
Sbjct: 260 ELSTLLRAHMAGAGTIARYGGEEFVLLLPNANLLQARVQCEYLRQSVAAMTI------AL 313

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +T+S G+A    +E +  +I RADQALY AK+ GR++VV   
Sbjct: 314 PVTVSIGVATLYPQESVEAVIKRADQALYAAKRGGRDQVVALE 356


>gi|121998140|ref|YP_001002927.1| diguanylate cyclase [Halorhodospira halophila SL1]
 gi|121589545|gb|ABM62125.1| diguanylate cyclase [Halorhodospira halophila SL1]
          Length = 412

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 111/237 (46%), Gaps = 42/237 (17%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
           +I  F   +T   GLE  L+ + SLV+ ++   + L  +  ++L+E         +++  
Sbjct: 190 HIGAFSALVTATVGLELSLMRHGSLVLPTLLAVVALHLLLFAVLQEAH-------RMAFR 242

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL--VV 164
           D L+GL N  A  +     + + +I   DID+FK  ND +GH +GD+V+  ++  +  V 
Sbjct: 243 DGLTGLPNRRAMDTLTQGLSGRYTIAMMDIDHFKAFNDTYGHEIGDQVLRRVASNIGRVG 302

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG--PS------- 215
             G P    R GGEEF+    G S  EA      +R+ I ++   + S   P+       
Sbjct: 303 AGGRPF---RYGGEEFSVVFPGRSPDEAVGALEAVRQAIADTPFRLRSADRPADDKRGSR 359

Query: 216 ----------IHITISAGIAERCHKEPIST------IIYRADQALYVAKKSGRNRVV 256
                       ITIS G+A     EP ST      ++  ADQALY AKK GRNR+ 
Sbjct: 360 ERSGQRGEQETRITISIGVA-----EPESTSASADDVVQAADQALYRAKKGGRNRLA 411


>gi|104780910|ref|YP_607408.1| sensory box protein [Pseudomonas entomophila L48]
 gi|95109897|emb|CAK14602.1| putative sensory box protein [Pseudomonas entomophila L48]
          Length = 798

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 14/206 (6%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           P  GL ++  E  +  I     +L  GY++   + +L      +  LS  D L+G+ N  
Sbjct: 595 PRAGLRWVRGEA-TPEIGDHGCTLWHGYLTD--ISDLKRVEEELRALSITDSLTGIHNRR 651

Query: 117 AFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            F   L           + L+++  DID+FK+IND FGH VGD+V+  L  ++       
Sbjct: 652 YFQERLRIELDRAQRDGQGLAVIMLDIDHFKRINDEFGHAVGDRVLRSLCQRIGQRLRRT 711

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               RLGGEEF     G+  ++A +LA +L + + +  +         +T S G+A    
Sbjct: 712 DVFCRLGGEEFMVLCPGNDAEQARLLALELWQGVRSVPVEGVG----RVTASFGVAGWRP 767

Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255
            E    ++ RAD  +Y AK+ GR+RV
Sbjct: 768 GEGADALLLRADAGVYAAKQGGRDRV 793


>gi|332561060|ref|ZP_08415378.1| diguanylate cyclase [Rhodobacter sphaeroides WS8N]
 gi|332274858|gb|EGJ20174.1| diguanylate cyclase [Rhodobacter sphaeroides WS8N]
          Length = 556

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 15/175 (8%)

Query: 96  SYNRISQLSRI----------DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQI 142
           S +R+++++R+          D L+GL N  A      +  E+   +++   DID+FKQI
Sbjct: 358 SRDRLAEITRLREAAEASARSDPLTGLGNRRALDRQFEAATEREGAIALALIDIDHFKQI 417

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH +GD+V+   + +L  V        R+GGEEF     G        L   L + 
Sbjct: 418 NDRLGHAMGDRVLQRFAVELSAVLPEGARAFRIGGEEFLTLCPGQDTGAVVDLLEKLARR 477

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
           +E +   +  G    +T SAG+A R      +  +  RAD  LY AK+ GRN+++
Sbjct: 478 LE-ADPPLRDGDLPRLTFSAGVAMRPGDGRSLGQLTARADARLYEAKRRGRNQIL 531


>gi|300703753|ref|YP_003745355.1| diguanylate cyclase [Ralstonia solanacearum CFBP2957]
 gi|299071416|emb|CBJ42735.1| putative diguanylate cyclase (GGDEF domain) [Ralstonia solanacearum
           CFBP2957]
          Length = 527

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 20/190 (10%)

Query: 84  YISGSILKELFISYNRIS--QLSRID------CLSGLLNHSAFISSL---GSYNEKLSIV 132
           YI    LK   +   R++  +L+R+D       L+GL N     ++L      +   S V
Sbjct: 328 YIEAHRLKRALLRGTRLTSARLARLDHEALTDPLTGLYNRRGVANALRLLAGPHRPFSAV 387

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK+IND  GH VGD+V+  ++  +          GR+GGEEF      ++ + A
Sbjct: 388 MLDVDHFKRINDRDGHDVGDQVLKHIAALIREQARHDDITGRIGGEEFILLLPDATPEGA 447

Query: 193 AILANDLRKIIENSQINISSGPSIH-ITISAGIAE--RCHKEPISTIIYRADQALYVAKK 249
              A  LR+ +E         P+   +T+S G+A   R  +E +  ++  +D ALY AK+
Sbjct: 448 FKTAERLRRAVE-----ARPNPTGRVVTVSLGVAHYPRASEE-VDAVLKLSDLALYQAKR 501

Query: 250 SGRNRVVCFS 259
           SGRNR V + 
Sbjct: 502 SGRNRTVLYQ 511


>gi|220903700|ref|YP_002479012.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867999|gb|ACL48334.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 317

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 81/173 (46%), Gaps = 14/173 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           +R  ++S  D L+GLLN  AFIS             + +++  DIDYFK+IND +GH  G
Sbjct: 140 SRYKEMSCRDSLTGLLNRRAFISRAMDMLKDPPDQGQAAVIMADIDYFKKINDTWGHACG 199

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++   +          R GGEEF     G   Q    +A  LR+ I    +   
Sbjct: 200 DAVLRHMAQIFLSQLREDDLCCRYGGEEFILLLPGMGLQPGYSVAERLRRHICAEPLAY- 258

Query: 212 SGPSIHITISAGIAERCHKEPI-------STIIYRADQALYVAKKSGRNRVVC 257
            G  I IT S G++      P+          +  AD  LY AKK+GRNRVVC
Sbjct: 259 EGHDIAITASLGVSCIDLNGPLPDSASVFEMTVKEADSCLYRAKKTGRNRVVC 311


>gi|163738617|ref|ZP_02146031.1| diguanylate cyclase [Phaeobacter gallaeciensis BS107]
 gi|161387945|gb|EDQ12300.1| diguanylate cyclase [Phaeobacter gallaeciensis BS107]
          Length = 476

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 89/176 (50%), Gaps = 29/176 (16%)

Query: 107 DCLSGLLNH---SAFISSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GL N      F+  + S +    E  +++  D+D+FKQIND +GHPVGD V+   +
Sbjct: 296 DPMTGLFNRRYAKPFLERVASTSAKTGETFAVMLADLDHFKQINDLYGHPVGDAVLIEAA 355

Query: 160 DQLVVVFGTPMFVGRLGGEEF--AAAALGSSEQEAAILANDLRKIIENSQINISS-GPSI 216
            +L         + R+GGEEF     A+G +  EAA  A+DL   I +   +I      I
Sbjct: 356 KRLQTALRPVDLLARVGGEEFMIVMPAIGEAMAEAA--ASDLCNRINSKPFHIPGVDAPI 413

Query: 217 HITISAGI-----------------AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++TIS G+                 A + H   +S +I  AD+ALY AK +GRN+V
Sbjct: 414 YVTISIGVVIGGRASAVDQRDGTDLAPQDHDSAVSALITNADRALYSAKHAGRNQV 469


>gi|153830180|ref|ZP_01982847.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|229529368|ref|ZP_04418758.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|148874320|gb|EDL72455.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|229333142|gb|EEN98628.1| GGDEF family protein [Vibrio cholerae 12129(1)]
          Length = 353

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 9/173 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGD 152
           N +  L+  D L+G  N  +  +S   +        L ++  D+D+FK IND FGH  GD
Sbjct: 173 NSLLYLASRDPLTGAHNRLSLTTSFQHFERFSDQTSLCLLVIDLDFFKSINDQFGHDTGD 232

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KV+   +     V G      R+GGEEF       S ++A  +   LR I+  SQ   + 
Sbjct: 233 KVLIETTRLFTQVVGDNNLY-RIGGEEFCVTLFDQSLEQAGRVCERLRAIV--SQHLFAF 289

Query: 213 GPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           G   + +TIS G+ E    + ++ ++  AD  LY AKK+GRN+V  F     N
Sbjct: 290 GEKRVQVTISIGVCEYQAGDQLNDLLKFADMELYRAKKAGRNQVRLFRHGSTN 342


>gi|157827084|ref|YP_001496148.1| response regulator PleD [Rickettsia bellii OSU 85-389]
 gi|157802388|gb|ABV79111.1| response regulator PleD [Rickettsia bellii OSU 85-389]
          Length = 457

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 79/163 (48%), Gaps = 10/163 (6%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N   F       +        KL ++  DID FK +ND +GH  GDKV+
Sbjct: 294 LAAKDGLTGLFNRRYFDVHIKQIVEKANKEGMKLYLLMCDIDNFKHVNDTYGHQAGDKVL 353

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQINISSG 213
              S  L   F     + R GGEEF       +  +A   A  +R  IE  N QI+    
Sbjct: 354 ITTSRILKNTFRVTDLIARFGGEEFTILLNDINIDQAIYTAERVRVKIESMNFQIDEQEE 413

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           P +  T+S G+ E    E I   I R+D+A+Y AK +G+N+VV
Sbjct: 414 P-LKKTVSIGVTEYKKCESIEEFIERSDKAMYEAKTTGKNKVV 455


>gi|228947764|ref|ZP_04110051.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228811751|gb|EEM58085.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 431

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ ID L+ + N   F   L +        NE ++++ FDID FK +ND +GH 
Sbjct: 262 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAVNDTYGHD 321

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 322 FGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 380

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             SG S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 381 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCVY 426


>gi|218699484|ref|YP_002407113.1| putative diguanylate cyclase [Escherichia coli IAI39]
 gi|218369470|emb|CAR17235.1| putative diguanylate cyclase [Escherichia coli IAI39]
          Length = 564

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 9/185 (4%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           LL  Y+   ++  +++  + +   +  D L+ L N  A             ++    S++
Sbjct: 374 LLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAKLCQTHQHPFSVI 433

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G++  +A
Sbjct: 434 QVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEEFCVILPGANLTQA 493

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKS 250
           A +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+AK++
Sbjct: 494 AEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQA 553

Query: 251 GRNRV 255
           GRNRV
Sbjct: 554 GRNRV 558


>gi|83643672|ref|YP_432107.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631715|gb|ABC27682.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 367

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 77/160 (48%), Gaps = 8/160 (5%)

Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+ L N       L         +    S++  DID+FK IND +GH  GD V+ 
Sbjct: 196 ARTDELTQLPNRRDMQQQLEKEYFRYKRHGSHFSVILLDIDHFKMINDTYGHDAGDFVLM 255

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +S+ LV          R GGEEF      +S  +A  LA  LRK IE S +   +   I
Sbjct: 256 KISELLVNACRKMDMAARWGGEEFLIQLPDTSLVQALTLAERLRKSIEASPLQYKN-QEI 314

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             TIS G+      + +++++ +AD  LY AK  GRN V+
Sbjct: 315 RYTISCGVCSISQAKDLASLLKQADVNLYQAKIKGRNMVI 354


>gi|78047166|ref|YP_363341.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria str.
            85-10]
 gi|78035596|emb|CAJ23266.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria str.
            85-10]
          Length = 1065

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 8/174 (4%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            +L  L I  +   + +  D L+GL N   F       IS        L +   DID+FK+
Sbjct: 890  LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSGRPLVLAILDIDHFKR 949

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            IND++ H  GD V+  +   L           RLGGEEFA     ++  EA  L   +R 
Sbjct: 950  INDHYSHASGDAVLHEVGVLLTAAARASDLPARLGGEEFALLLADTTLDEAQALCLRIRA 1009

Query: 202  IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  +++ N +S   + +T SAG+A     +  S+++ RAD ALY AK +GR+R+
Sbjct: 1010 LF-HARHNWASVEGLQVTFSAGVAALRDDDTGSSLMQRADHALYEAKSAGRDRI 1062


>gi|127513133|ref|YP_001094330.1| diguanylate cyclase [Shewanella loihica PV-4]
 gi|126638428|gb|ABO24071.1| diguanylate cyclase [Shewanella loihica PV-4]
          Length = 400

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 89/187 (47%), Gaps = 28/187 (14%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL---------GSYNE------------KLSIVFFDID 137
           R+ ++S  D L+GL N   FI  +          SY+              L  +  DID
Sbjct: 173 RLQEMSHRDPLTGLKNRR-FIEEMIAQDLNRVDRSYDATQLRGEGTPSKADLLALIIDID 231

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK IND +GH  GD+V++ +  +L  +F    +V R GGEEF   A     QE   LA 
Sbjct: 232 HFKPINDTYGHLAGDRVLSQVGQRLTTLFRNYDYVVRWGGEEFLVVARFIDRQEINHLAE 291

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAE----RCHKEPIS--TIIYRADQALYVAKKSG 251
            +R  IE+ +I + +  +I IT S G A         + IS   +++ AD ALY AK S 
Sbjct: 292 KVRHAIESMEIELDAKRNIKITASVGAAPYPFSTAQADRISWEQVVHLADMALYQAKTSS 351

Query: 252 RNRVVCF 258
           RN  V +
Sbjct: 352 RNTWVSY 358


>gi|228987234|ref|ZP_04147355.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228772463|gb|EEM20908.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 430

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ ID L+ + N   F   L +        NE ++++ FDID FK +ND +GH 
Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAVNDTYGHD 320

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 321 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 379

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             SG S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 380 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCVY 425


>gi|190892769|ref|YP_001979311.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190698048|gb|ACE92133.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 783

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 14/179 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  S +R  + +  D L+GLLN   F       I++  +  ++L+ +F D+D FK IND
Sbjct: 336 ELKASEDRNHRQAITDHLTGLLNRQGFEAVLDSKIAAADASGQELACLFVDLDRFKWIND 395

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKII 203
           N GH  GDK +  L ++L           RLGG+EFA       +E+ A  +   +  I 
Sbjct: 396 NMGHAAGDKALIELVERLKTHLAPSDEAARLGGDEFAILLPAKDAERRAKAMCEQIASIF 455

Query: 204 ENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E         P +H++ S GI+    H    + ++ ++D A+Y  K+ G+N    F ++
Sbjct: 456 ET-----PFAPDMHLSASIGISIYPHHATTAAELLQKSDMAMYAKKRDGKNGAQLFDNV 509


>gi|103485959|ref|YP_615520.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingopyxis alaskensis RB2256]
 gi|98976036|gb|ABF52187.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingopyxis alaskensis RB2256]
          Length = 878

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 60/194 (30%), Positives = 95/194 (48%), Gaps = 23/194 (11%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDID 137
           SG+ L +   S   I+QL+R D L+GL N          A  + +G   +  +++  D+D
Sbjct: 329 SGTDLTDQKRSEREINQLARYDTLTGLANRRHITDLLERALRTHIGQ-PQPCALLLMDLD 387

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSEQEAAIL 195
            FK +ND  GHPVGD+++  ++ +L  + G    VGRLGG+EF      L   E+ A I 
Sbjct: 388 RFKAVNDTLGHPVGDQLLQQVAGRLTQIVGDKGQVGRLGGDEFQIVLPQLNHPEKIAGIA 447

Query: 196 ANDLRKI-----IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
              +  +     IE  Q+ I S   I ++   G++        S ++  AD ALY AK +
Sbjct: 448 NAIILSLAKPFAIEGEQVRIGSSIGIAVSDGEGVSA-------SALVRNADLALYAAKDA 500

Query: 251 GRNRVVCFSDIENN 264
           GR     ++D  +N
Sbjct: 501 GRGVYRFYADAMHN 514


>gi|269104333|ref|ZP_06157029.1| GGDEF family protein [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268160973|gb|EEZ39470.1| GGDEF family protein [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 532

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 112/246 (45%), Gaps = 35/246 (14%)

Query: 12  WLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL 71
           WL H K    F  + + I  +IF    +  VI +    + Y  L+    L+Y L E    
Sbjct: 316 WLLHFKQSTDFDMNEYWILGAIFI---VGLVIALLASLVTYQQLSQNQRLQYALTERT-- 370

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKL 129
                              KEL    N        D L+ LLN  AF  +L  +  +++ 
Sbjct: 371 -------------------KELEFLVNH-------DSLTRLLNRRAFRLTLPLWIESKQF 404

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           ++V FDID FK IND +GH  GD+ +  ++  +  +      + RLGG+EFA     +  
Sbjct: 405 TLVGFDIDKFKSINDTYGHIAGDEALIHVTQLVQGLLQKHEQLYRLGGDEFAILMPETDT 464

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            +   + N +R  +E+S + I  G  I+ T+S G     ++E    +IY++D  +Y +K+
Sbjct: 465 TKIYEVLNRVRSAVEHSPL-IYQGAKIYCTLSIGAVVHSNQEA-EALIYQSDLQMYKSKQ 522

Query: 250 SGRNRV 255
            GRNR+
Sbjct: 523 QGRNRI 528


>gi|258621651|ref|ZP_05716682.1| GGDEF family protein [Vibrio mimicus VM573]
 gi|258585882|gb|EEW10600.1| GGDEF family protein [Vibrio mimicus VM573]
          Length = 440

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 20/165 (12%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+G +N       L            + S++F DIDYFKQ+ND +GH +GD +
Sbjct: 272 EMAHRDALTGAINRHGIRDWLQEQARLVRWQLNQFSVLFIDIDYFKQVNDVYGHGIGDDL 331

Query: 155 IAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           +     + V+V    +  G    R GGEEF      +   +A  LA+ LR  +EN    +
Sbjct: 332 LR----EFVLVISREIREGDRLVRWGGEEFVVFCAQTGIDQAVDLADRLRTRVENHSW-L 386

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             G    +T S GIA+    E ++  + RAD+ALY AK+ GRNR+
Sbjct: 387 HGG---ELTCSIGIAQ-MENERVTETVSRADEALYRAKRLGRNRI 427


>gi|254784921|ref|YP_003072349.1| response regulator receiver domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237685780|gb|ACR13044.1| response regulator receiver domain protein [Teredinibacter turnerae
           T7901]
          Length = 300

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 9/174 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIN 143
           + L  +   + +L+  D L+ + N   F        S    +  +LS++ FD+D FK +N
Sbjct: 126 RALVRANEELERLATQDTLTDVYNRRHFFTLAEAEFSKARRHGRQLSVLMFDVDLFKAVN 185

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD+ +  +++    V      +GRLGGEEFA     +    A  LA  +R   
Sbjct: 186 DTYGHAAGDQALRTITECCRHVVRDSDILGRLGGEEFALCCPDADLDGAFHLAERIRTNC 245

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
           E +Q+N+    +  IT+S G+ +   K+     ++ RAD  L+ AK  GRNR V
Sbjct: 246 ELAQVNLDDA-AFGITLSIGVTQMNEKDAHFDHLLQRADTLLFQAKALGRNRSV 298


>gi|167906045|ref|ZP_02493250.1| EAL/GGDEF domain protein [Burkholderia pseudomallei NCTC 13177]
          Length = 688

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 4/127 (3%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186
           KL+I+F D+D FK IND+ GHP GD+V+   S +L+        V RLGG+EF       
Sbjct: 288 KLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESV 347

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245
           SS+ EAA +A D+ + +   + N   G ++ +T S GIA      +   T++  AD A+Y
Sbjct: 348 SSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGDTADTLLRHADAAMY 405

Query: 246 VAKKSGR 252
            AK+ GR
Sbjct: 406 AAKRGGR 412


>gi|254286348|ref|ZP_04961306.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|150423515|gb|EDN15458.1| GGDEF family protein [Vibrio cholerae AM-19226]
          Length = 353

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 9/173 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGD 152
           N +  L+  D L+G  N  +  +S   +        L ++  D+D+FK IND FGH  GD
Sbjct: 173 NSLLYLASRDPLTGAHNRLSLTTSFQHFERFNDQTSLCLLVIDLDFFKSINDQFGHDTGD 232

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KV+   +     V G      R+GGEEF       S ++A  +   LR I+  SQ   + 
Sbjct: 233 KVLIETTRLFAQVVGDNNLY-RIGGEEFCVTLFDQSLEQAGRVCERLRAIV--SQHLFAF 289

Query: 213 GPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           G   + +TIS G+ E    + ++ ++  AD  LY AKK+GRN+V  F     N
Sbjct: 290 GEKRVQVTISIGVCEYQAGDQLNDLLKFADMELYRAKKAGRNQVRLFRHGSTN 342


>gi|71278056|ref|YP_270245.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71143796|gb|AAZ24269.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 322

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 84/163 (51%), Gaps = 13/163 (7%)

Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS+ D L+ L N + + + L       G      S+V  DID+FK +ND +GH VGD VI
Sbjct: 155 LSQTDGLTQLFNRAHWETCLLAEHKRWGRSQHASSLVMLDIDHFKNVNDTYGHVVGDVVI 214

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             LS  +          GR GGEEFA     +S + A + A  LRK +  + +  +    
Sbjct: 215 RHLSSLIRHHVRETDICGRYGGEEFAILLADTSLKNAYVFAERLRKEVAKATVTYND-ID 273

Query: 216 IHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255
           I+ TIS G+AE    E I++    +  AD ALY +K++GRN+ 
Sbjct: 274 INYTISVGVAEV--DESITSHEAWVECADAALYQSKETGRNKT 314


>gi|304396822|ref|ZP_07378702.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Pantoea sp.
           aB]
 gi|304355618|gb|EFM19985.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Pantoea sp.
           aB]
          Length = 694

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 102/207 (49%), Gaps = 25/207 (12%)

Query: 64  ILVENLSLVIISITI--SLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFIS 120
           + V  ++L+I+ IT+  S+L   +  + L       N+ + QL+  D L+ L N +    
Sbjct: 217 VWVTLITLIILGITLLSSMLDAQLRAARLATRLRHANQELRQLAMHDNLTALPNRAMLEQ 276

Query: 121 SL------GSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L         NE + ++++ D+D FK +ND +GH VGD+++  +S++L       M + 
Sbjct: 277 QLDLAIKQAMLNENRFAVIYMDLDGFKAVNDTWGHHVGDRLLVAVSERLRSQLSNTMLLV 336

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------SIHITISAGIAE- 226
           RLGG+EF   A       A  LA  L K+I        S P       +H+++SAGIA  
Sbjct: 337 RLGGDEFVLMAEACDVTPARQLAQKLVKVI--------STPFELDRYVLHVSLSAGIAIF 388

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRN 253
             H      +++ AD A+Y  K SGRN
Sbjct: 389 PLHGRNRQELLFNADSAMYHTKHSGRN 415


>gi|258405650|ref|YP_003198392.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692]
 gi|257797877|gb|ACV68814.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692]
          Length = 321

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 10/173 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           +EL  +  +I+++SR+D L+GL N S F   L         +  + +I+  D+D+FK+IN
Sbjct: 149 QELEWANEKITRISRMDYLTGLSNRSYFQERLKEIFALTKRHGLEFTILLADLDHFKRIN 208

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH +GDKV+      L     T     R GGEEF      +           +R+ +
Sbjct: 209 DTYGHDMGDKVLQAFGTLLANECRTEDLPARYGGEEFILVFPKTHASGVITFYERIRREL 268

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +S  ++   P   +T SAGI E        +++ +AD ALY AKK+GR+R V
Sbjct: 269 IHS--DLLPDPDF-VTFSAGITEYEEGGTEISLLKKADDALYEAKKNGRDRYV 318


>gi|209516012|ref|ZP_03264872.1| diguanylate cyclase [Burkholderia sp. H160]
 gi|209503472|gb|EEA03468.1| diguanylate cyclase [Burkholderia sp. H160]
          Length = 563

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 89/180 (49%), Gaps = 21/180 (11%)

Query: 90  LKELFISYNRI-SQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           L E   S N + S  +R D L+G L+   F+  L        +  E L +   D+D+FKQ
Sbjct: 372 LAEQLQSANTLLSAEARHDALTGALSRRYFLDLLRHEIDRAHAGREPLCMAIADLDHFKQ 431

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH  GD+ +    D       +   +GRLGGEEF    L S+      LA+  R+
Sbjct: 432 INDRFGHAAGDRALEHFVDTCRAELRSTDAIGRLGGEEF-GLLLPSTN-----LASG-RE 484

Query: 202 IIENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++E  ++ + + P      S+ +++S GI E    +    I+ RAD ALY AK  GR+R 
Sbjct: 485 VVERLRLRLKAVPSPRLPASVGLSVSIGITELSPDDLPERIMSRADTALYAAKTGGRDRT 544


>gi|78047100|ref|YP_363275.1| putative signal transduction protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035530|emb|CAJ23176.1| putative signal transduction protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 324

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 15/196 (7%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------I 119
           + +S +++++ ++L +GY     +++  +    + +L+ +D L+GL N           I
Sbjct: 133 QGVSTIVVTL-VTLAVGYAFSLRMQDDRVH---LEELASLDALTGLPNRRMLERALTHQI 188

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                ++   S++  D+D+FK++ND +GH  GD  ++ L+  L      P  V R GGEE
Sbjct: 189 DQRQPHDRLNSLIILDLDHFKEVNDLYGHAAGDAALSDLATILRFEVREPHQVFRFGGEE 248

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F       S  E       LRK+I N       GP   IT+S G A    +        R
Sbjct: 249 FVVLLRAGSLAELEAATERLRKVIRNGL----RGPGGRITVSLGAARHDGETHWQDWFSR 304

Query: 240 ADQALYVAKKSGRNRV 255
           AD ALY+AK  GR+ V
Sbjct: 305 ADAALYLAKNGGRDSV 320


>gi|294665480|ref|ZP_06730764.1| sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604734|gb|EFF48101.1| sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 375

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 13/163 (7%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GL N  AF  +L +  E+       LS+   D+D+FK +ND  GH  GD V+ 
Sbjct: 219 TRTDPLTGLPNRRAFAVALAAATEQTRAVGQPLSVALLDVDHFKTVNDVHGHDQGDAVLR 278

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            LS  L         + R GGEEF      +   +A +    LR+ +    I      ++
Sbjct: 279 ELSTLLRAHMAGAGTIARYGGEEFVLLLPNADLLQARVQCEYLRQSVAAMTI------AL 332

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +T+S G+A    +E +  +I RADQALY AK+ GR++VV   
Sbjct: 333 PVTVSIGVATLYPQESVEAVIKRADQALYAAKRGGRDQVVALE 375


>gi|229520623|ref|ZP_04410047.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
 gi|229342447|gb|EEO07441.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
          Length = 353

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 9/173 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGD 152
           N +  L+  D L+G  N  +  +S   +        L ++  D+D+FK IND FGH  GD
Sbjct: 173 NSLLYLASRDPLTGAHNRLSLTTSFQHFERFSDQTSLCLLVIDLDFFKSINDQFGHDTGD 232

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KV+   +     V G      R+GGEEF       S ++A  +   LR I+  SQ   + 
Sbjct: 233 KVLIETTRLFTQVVGDNNLY-RIGGEEFCVTLFDQSLEQAGRVCERLRAIV--SQHLFAF 289

Query: 213 GPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           G   + +TIS G+ E    + ++ ++  AD  LY AKK+GRN+V  F     N
Sbjct: 290 GEKRVQVTISIGVCEYQAGDQLNDLLKFADMELYRAKKAGRNQVRLFRHGSTN 342


>gi|253699795|ref|YP_003020984.1| diguanylate cyclase [Geobacter sp. M21]
 gi|251774645|gb|ACT17226.1| diguanylate cyclase [Geobacter sp. M21]
          Length = 459

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           YN    L  ID L+GL N+          +     Y   LS++F DID FK +ND FGH 
Sbjct: 282 YNFAKDLLYIDELTGLYNYRYLDVVLERELKRSERYGSNLSVLFLDIDLFKSVNDTFGHL 341

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +G +V+  +   L         V R GG+E+    + +    AAI+A  +RK++E    +
Sbjct: 342 IGSRVLREIGSLLRKSVRDVDAVIRYGGDEYTIVLVETGLDGAAIVAERIRKMVEAHTFS 401

Query: 210 ISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNR 254
            + G +I +T+S G A  C  +  ST   ++  ADQA+Y  K +G+N+
Sbjct: 402 KADGLAIKLTVSLGYA--CSPDDASTKTELLEMADQAMYRGKAAGKNK 447


>gi|188588956|ref|YP_001920122.1| ggdef domain protein [Clostridium botulinum E3 str. Alaska E43]
 gi|188499237|gb|ACD52373.1| ggdef domain protein [Clostridium botulinum E3 str. Alaska E43]
          Length = 1728

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 11/165 (6%)

Query: 104  SRIDCLSGLLNHS----AF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
            S +D L+G+ N      AF   I    S   + S++ FDID FK +ND +GH  GD+V+ 
Sbjct: 1392 STLDKLTGVYNRKYLEKAFCDLIDDSYSKEREFSLIIFDIDDFKGVNDRYGHQTGDEVLI 1451

Query: 157  FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             L+ ++           R GGEEF       SE EA + +  +R  +E ++I    G   
Sbjct: 1452 KLTKEVKKCLSKEDIFVRYGGEEFIILLPDKSEYEAYLFSEKIRNRVECAKI---LGEKR 1508

Query: 217  HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +TIS GI+    H      +I  ADQALY++K  G+N+   +++
Sbjct: 1509 KVTISLGISVYLKHSSNSEDLIKMADQALYISKAQGKNKTTIWNE 1553


>gi|149194056|ref|ZP_01871154.1| diguanylate cyclase (GGDEF domain) [Caminibacter mediatlanticus
           TB-2]
 gi|149136009|gb|EDM24487.1| diguanylate cyclase (GGDEF domain) [Caminibacter mediatlanticus
           TB-2]
          Length = 395

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 87/168 (51%), Gaps = 13/168 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YN--EKLSIVFFDIDYFKQINDNFGH 148
           +L+ SY ++++  +ID L+ + N       L   +N  E  +I   DID+FK+IND +GH
Sbjct: 236 DLYDSYKKVNKKLQIDSLTNVYNRYCLEHHLEKVFNLYENKTIAMLDIDFFKKINDTYGH 295

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GDKV+   +  +  V      V R GGEEF      ++++EA I+   +++ +     
Sbjct: 296 QYGDKVLEHFAKTIKSVVRKSDIVIRYGGEEFLIFFPNTTKKEALIILLKIKRRLHECDY 355

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           N         T SAGI++     P   +I  AD+ LY AKK GR+R++
Sbjct: 356 N--------YTFSAGISDEGSSLP--EMIKIADERLYKAKKEGRDRII 393


>gi|197118430|ref|YP_002138857.1| GAF domain-containing sensor diguanylate cyclase [Geobacter
           bemidjiensis Bem]
 gi|197087790|gb|ACH39061.1| sensor diguanylate cyclase, GAF domain-containing protein
           [Geobacter bemidjiensis Bem]
          Length = 704

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 83/174 (47%), Gaps = 9/174 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           E+     R  QLS  D L+GL N     + L     +       L+++F D+D+FK  ND
Sbjct: 493 EVLEESERFEQLSVTDALTGLYNRRFLKNRLEEELNRSIRQGLNLTVIFIDLDFFKNYND 552

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD  +   ++ +         V R GGEEF A   G+S+ EA I+A  +R  IE
Sbjct: 553 LCGHLAGDDALRTTAEIIKASLRDMDIVARYGGEEFCAVLPGTSKVEAMIVAERIRSEIE 612

Query: 205 NSQINISSG-PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
                  S  P + +T S G+A         + +++ +D ALY AK  GRNR+V
Sbjct: 613 REIFPGESEIPQVRLTASLGVASFPEDGRTFTALVHASDVALYEAKAGGRNRIV 666


>gi|153213333|ref|ZP_01948722.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|124115986|gb|EAY34806.1| GGDEF family protein [Vibrio cholerae 1587]
          Length = 353

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 9/173 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGD 152
           N +  L+  D L+G  N  +  +S   +        L ++  D+D+FK IND FGH  GD
Sbjct: 173 NSLLYLASRDPLTGAHNRLSLTTSFQHFERFSDQTSLCLLVIDLDFFKSINDQFGHDTGD 232

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KV+   +     V G      R+GGEEF       S ++A  +   LR I+  SQ   + 
Sbjct: 233 KVLIETTRLFTQVVGDNNLY-RIGGEEFCVTLFDQSLEQAGRVCERLRAIV--SQHLFAF 289

Query: 213 GPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           G   + +TIS G+ E    + ++ ++  AD  LY AKK+GRN+V  F     N
Sbjct: 290 GEKRVQVTISIGVCEYQAGDQLNDLLKFADMELYRAKKAGRNQVRLFRHGSTN 342


>gi|86360811|ref|YP_472698.1| putative two-component response regulator protein [Rhizobium etli
           CFN 42]
 gi|86284913|gb|ABC93971.1| putative two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 416

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQIN 143
           + EL  +  R+ +L+R D L+G+ N    + +L      G     ++++  DID+FK +N
Sbjct: 221 VAELADANARLERLARTDPLTGIANRRWMMETLESLWRHGRETGIVAMLMCDIDHFKGLN 280

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D  GH  GD+ +  ++  +   V      V R GGEEF        E+EA  +A  +R+ 
Sbjct: 281 DKLGHGEGDRCLVKVAGIIQSCVRADRDLVSRHGGEEFLVVLPDVDEEEAVAVARRIRES 340

Query: 203 IENSQI-NISS--GPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVV 256
           +E + + N +S  GPS  +T+S G+A +   +    ++ + + AD ALY AK++GRN+V 
Sbjct: 341 VEAAALPNPASSVGPS--VTLSVGVAFKSRADTGVSLANLQHEADMALYRAKEAGRNQVS 398

Query: 257 CF 258
            F
Sbjct: 399 VF 400


>gi|258626326|ref|ZP_05721173.1| GGDEF family protein [Vibrio mimicus VM603]
 gi|258581378|gb|EEW06280.1| GGDEF family protein [Vibrio mimicus VM603]
          Length = 489

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 81/161 (50%), Gaps = 9/161 (5%)

Query: 101 SQLSRIDCLSGLLNHSAFISSL--GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ++L+  D ++GLLN       L    +N+ L+I   DID FKQIND +GH +GDKVI ++
Sbjct: 332 AELAARDPMTGLLNRRGMEGFLQGKRHNQYLAIAVLDIDDFKQINDTYGHDMGDKVICYI 391

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            +Q+     +   V R GGEEF         EQ   I+      +  +S   +  G    
Sbjct: 392 GEQIENHIRSSDAVARFGGEEFVVYVTAKEQEQIHRIMHRIFDAVCHDSTQILDQG---- 447

Query: 218 ITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            T+S G  I E   +     +   ADQ LYVAK SG+N++V
Sbjct: 448 FTVSGGVEIVESKTELTFEELFKAADQKLYVAKSSGKNQLV 488


>gi|325981418|ref|YP_004293820.1| diguanylate cyclase with GAF sensor [Nitrosomonas sp. AL212]
 gi|325530937|gb|ADZ25658.1| diguanylate cyclase with GAF sensor [Nitrosomonas sp. AL212]
          Length = 411

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 100/204 (49%), Gaps = 19/204 (9%)

Query: 67  ENLSLVIISITISLLLG----YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           ++L+L I S  IS+L+     Y    + K+L      + Q    D L+GL N       L
Sbjct: 200 QDLALQIAS-QISVLIEKNQLYQGVKLNKQLKAQKKSLEQRVTHDALTGLFNRPGIFDIL 258

Query: 123 ---------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                    G Y   ++I+  DID+FK IND +GH  GD V+  ++++L     +  ++G
Sbjct: 259 HKQIQRAKRGGYG--IAIIMIDIDHFKAINDTYGHLTGDAVLCEIANRLTQSARSHEYIG 316

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEF A     ++  A   A   R  +   +I  ++   + +TIS G+A     E +
Sbjct: 317 RYGGEEFLAIISPYNQDGALKAAERFRNAVACKEIK-ANETFVSVTISLGVAISAEAETL 375

Query: 234 ST--IIYRADQALYVAKKSGRNRV 255
               ++ +AD+ALY AK  GRNRV
Sbjct: 376 DEKWLLKKADEALYQAKHKGRNRV 399


>gi|170742613|ref|YP_001771268.1| diguanylate cyclase [Methylobacterium sp. 4-46]
 gi|168196887|gb|ACA18834.1| diguanylate cyclase [Methylobacterium sp. 4-46]
          Length = 404

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 111/233 (47%), Gaps = 29/233 (12%)

Query: 37  IFIATVIFIANIFLF-YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           + +AT +  A I +   +   P Y +   +     LV   +T+     ++SG+ ++ L  
Sbjct: 145 VMLATAVLFAPILVGGLMRPEPAYQVGAAI-----LVPFWLTVRESARHLSGAFIERLE- 198

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPV 150
           +   ++  +  D L+GLLN + F++ LG+  E+      +++  D+D FK++ND  GHPV
Sbjct: 199 AKRALAHQAEHDALTGLLNRAGFLARLGAALEQAGSRPFALIAIDLDGFKRVNDRLGHPV 258

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEF---------AAAALGSSEQEAAILANDLRK 201
           GD V+  +  +L          GRLGG+EF           AA   +E+  A L +D   
Sbjct: 259 GDAVLVEVGMRLRRCLAPDDVAGRLGGDEFMILTRADGGVPAAADRAERVIAAL-SDPYP 317

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + E  +I  S+G    +  S    E       + ++ R D+ALY AK+ GR R
Sbjct: 318 VAEPQRIGASAG----LASSEDWREALDA---AALLERVDEALYAAKRGGRGR 363


>gi|121728414|ref|ZP_01681441.1| GGDEF family protein [Vibrio cholerae V52]
 gi|121629287|gb|EAX61721.1| GGDEF family protein [Vibrio cholerae V52]
          Length = 353

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 9/173 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGD 152
           N +  L+  D L+G  N  +  +S   +        L ++  D+D+FK IND FGH  GD
Sbjct: 173 NSLLYLASRDPLTGAHNRLSLTTSFQHFERFNDQTSLCLLVIDLDFFKSINDQFGHDTGD 232

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KV+   +     V G      R+GGEEF       S ++A  +   LR I+  SQ   + 
Sbjct: 233 KVLIETTRLFAQVVGDNNLY-RIGGEEFCVTLFDQSLEQAGRVCERLRAIV--SQHLFAF 289

Query: 213 GPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           G   + +TIS G+ E    + ++ ++  AD  LY AKK+GRN+V  F     N
Sbjct: 290 GEKRVQVTISIGVCEYQAGDQLNDLLKFADMELYRAKKAGRNQVRLFRHGSTN 342


>gi|77460772|ref|YP_350279.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens
           Pf0-1]
 gi|77384775|gb|ABA76288.1| putative sensory box GGDEF/EAL domain protein with PAS/PAC sensor
           [Pseudomonas fluorescens Pf0-1]
          Length = 757

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 107/210 (50%), Gaps = 15/210 (7%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFI 119
           ++  VEN  + +      LL   + G IL   E  ++  +++ L+R D L+GL N +  I
Sbjct: 276 DWRWVENRYIPVRDHDGRLL--EVEGIILDITERRLAEEKMNLLARTDGLTGLANRATLI 333

Query: 120 SSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L               + + D+D+FK+IND  GHPVGD ++  ++ ++         V
Sbjct: 334 ERLHQAFAAARRGAAPFAVFYLDLDHFKRINDTLGHPVGDLLLQEVAQRIKSNVRENDVV 393

Query: 173 GRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHK 230
            RLGG+EFA   L  S+  ++A +A  +R  +  SQ    +G ++H ++S GI   R   
Sbjct: 394 ARLGGDEFAILQLDVSDPTQSATVATKIRDAL--SQPYHLTGNALHTSVSIGICLYRSTS 451

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
               +++  AD ALY AK++GRN+   +S+
Sbjct: 452 LDADSLLAGADMALYRAKETGRNQYQFYSE 481


>gi|325926523|ref|ZP_08187840.1| diguanylate cyclase with GAF sensor [Xanthomonas perforans 91-118]
 gi|325543095|gb|EGD14541.1| diguanylate cyclase with GAF sensor [Xanthomonas perforans 91-118]
          Length = 388

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 13/163 (7%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GL N  AF  +L +  E+       LS+   D+D+FK +ND  GH  GD V+ 
Sbjct: 232 TRTDPLTGLPNRRAFAVALAAATEQTRAVGQPLSVALLDVDHFKTVNDVHGHDQGDAVLR 291

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            LS  L         + R GGEEF      +   +A +    LR+ +    I      ++
Sbjct: 292 ELSALLRAHMAGAGTIARYGGEEFVLLLPNTDLLQARVQCEYLRQSVAAMTI------AL 345

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +T+S G+A    +E +  +I RADQALY AK+ GR++VV   
Sbjct: 346 PVTVSIGVATLYPQESVEAVIKRADQALYAAKRGGRDQVVALE 388


>gi|257092693|ref|YP_003166334.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045217|gb|ACV34405.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 496

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 104/197 (52%), Gaps = 12/197 (6%)

Query: 71  LVIISITI-SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-- 127
           L+   +T+ + ++ Y S  +L+ L     ++ +LS  D L+G  +   F+  L    E  
Sbjct: 301 LLAFGVTVPTTVVAYRSLRLLRALASRDAQLHRLSTTDGLTGASSRQHFVDELADQMETA 360

Query: 128 -----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                 L+++ F+ID+F++IND +GH VGD+V+   +            +GRLG  EFA 
Sbjct: 361 RRQASALTVLLFNIDFFQRINDGYGHAVGDQVLVAFARVARGCLRERDLLGRLGAGEFAI 420

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAGI-AERCHKEPISTIIYRA 240
              G++ +EA ++A  +R+  E ++I I++   ++  T SAG+ A       +  ++ RA
Sbjct: 421 LLPGTAVEEAVLVAERVRR--ETAEIAIATENGTVQFTASAGLTAAHMADSSVDDLLKRA 478

Query: 241 DQALYVAKKSGRNRVVC 257
            +AL+ A+  G +RVV 
Sbjct: 479 AKALHDARTGGHDRVVV 495


>gi|288940811|ref|YP_003443051.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Allochromatium vinosum DSM
           180]
 gi|288896183|gb|ADC62019.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Allochromatium vinosum DSM 180]
          Length = 1147

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 17/173 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  L+  D L+GL N   F   LG         +++ ++   D+D+FK +ND+ GHPVGD
Sbjct: 713 IQHLAFHDSLTGLPNRLLFKEELGQALAALRRDDQRFALHMLDLDHFKDVNDSLGHPVGD 772

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIEN-SQINI 210
           +++  ++++L  +      + R GG+EFA       E  +AA LA    KIIE   Q   
Sbjct: 773 ELLRAVAERLTAITRGTDVLARFGGDEFALLQSKIGEIGDAAALAT---KIIEAFGQAFW 829

Query: 211 SSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             G  I I  S GI    + CH   +  II RAD ALY AK++GR     F+D
Sbjct: 830 IDGNRIDINTSIGILIADQACHD--VDDIITRADVALYKAKEAGRGTHAFFAD 880


>gi|167742071|ref|ZP_02414845.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 14]
          Length = 688

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 4/127 (3%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186
           KL+I+F D+D FK IND+ GHP GD+V+   S +L+        V RLGG+EF       
Sbjct: 288 KLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESV 347

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245
           SS+ EAA +A D+ + +   + N   G ++ +T S GIA      +   T++  AD A+Y
Sbjct: 348 SSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGDTADTLLRHADAAMY 405

Query: 246 VAKKSGR 252
            AK+ GR
Sbjct: 406 AAKRGGR 412


>gi|89092562|ref|ZP_01165515.1| Signal transduction histidine kinase [Oceanospirillum sp. MED92]
 gi|89083074|gb|EAR62293.1| Signal transduction histidine kinase [Oceanospirillum sp. MED92]
          Length = 427

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 89/170 (52%), Gaps = 12/170 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I +L+  D L+GL N   F       I      N    ++  DID+FKQ ND +GH  G
Sbjct: 256 KIEKLAVTDSLTGLFNRRNFEYLSDSLIERAKRENSFFCLIILDIDHFKQYNDTYGHLEG 315

Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-N 209
           D+V+  +S  L   V     +  R+GGEEFA      ++  A  LA  ++  +E+  I +
Sbjct: 316 DEVLKKISQTLRKNVRRGNDYCFRVGGEEFAVIFTERTKGAATALAERIKNEVESLAIPH 375

Query: 210 ISSGPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +G S ++TIS G+    +   ++PIS I    D+ LY AK+SGRN+++
Sbjct: 376 KHNGASQYVTISLGLMMTKDFTDEDPISAIYQHTDELLYKAKESGRNKLI 425


>gi|126456988|ref|YP_001075141.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106a]
 gi|167849102|ref|ZP_02474610.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei B7210]
 gi|242313043|ref|ZP_04812060.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106b]
 gi|126230756|gb|ABN94169.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106a]
 gi|242136282|gb|EES22685.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106b]
          Length = 688

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 4/127 (3%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186
           KL+I+F D+D FK IND+ GHP GD+V+   S +L+        V RLGG+EF       
Sbjct: 288 KLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESV 347

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245
           SS+ EAA +A D+ + +   + N   G ++ +T S GIA      +   T++  AD A+Y
Sbjct: 348 SSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGDTADTLLRHADAAMY 405

Query: 246 VAKKSGR 252
            AK+ GR
Sbjct: 406 AAKRGGR 412


>gi|323702219|ref|ZP_08113886.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532906|gb|EGB22778.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 555

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 11/175 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           N + +L+  D LSG+ NH  F       +      N+ +S++ FDID+FK  ND FGH  
Sbjct: 178 NYLLELANKDGLSGVYNHRYFQDYFKKSVEEAKETNQPISLIIFDIDFFKYYNDTFGHTA 237

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209
           GD+V+  +   L+     P    R GG+EF         + A + A  L+  I    +N 
Sbjct: 238 GDQVLRDVGQVLLQEIKHPGIAARYGGDEFCILLPHHDSKAAFLTAKKLKDKINELILND 297

Query: 210 --ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             ++  P+  ++I+ G+A    H +    ++  ADQALY AK++ ++++  + ++
Sbjct: 298 EKVNQLPTGKLSITVGVASFPEHTKSGEDLLELADQALYKAKRTSKDKIELYFNV 352


>gi|323691857|ref|ZP_08106111.1| hypothetical protein HMPREF9475_00973 [Clostridium symbiosum
           WAL-14673]
 gi|323504064|gb|EGB19872.1| hypothetical protein HMPREF9475_00973 [Clostridium symbiosum
           WAL-14673]
          Length = 611

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/179 (36%), Positives = 98/179 (54%), Gaps = 16/179 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQ 141
           ISG   KE+    N +S LS  D L+GL+N  AF+  + +  E+ +  FF   D+D FK 
Sbjct: 434 ISGRKAKEM----NLLS-LSCTDALTGLMNREAFVGRVDTLIEEKNKGFFFMIDVDNFKM 488

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD  +  + + L   F     V R+GG+EFAA    +S+ E A    +L  
Sbjct: 489 VNDTKGHEAGDGCLTRIGELLRQSFRDYDPVARIGGDEFAAFMSDTSDIENAQKKAEL-- 546

Query: 202 IIENSQINISSGP-SIHITISAGIAERCHKEPIS-TIIYR-ADQALYVAKKSGRNRVVC 257
           I+  S++  S G   + +++S GIA  C  +  S   +YR AD A+Y+AK+ G+NR +C
Sbjct: 547 IL--SKLKHSQGEGEMEMSVSIGIAA-CPDDGQSYQELYRNADHAMYLAKREGKNRFIC 602


>gi|301018185|ref|ZP_07182702.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
 gi|300399838|gb|EFJ83376.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
          Length = 436

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 95/189 (50%), Gaps = 11/189 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 243 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 302

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 303 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 362

Query: 190 QEAAILANDLR-KIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYV 246
            +AA +A  +R K+IE   + I+   +I I+ S G+  +E         +   AD+ LY+
Sbjct: 363 TQAAEVAERIRLKLIEKEML-IAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYL 421

Query: 247 AKKSGRNRV 255
           AK++GRNRV
Sbjct: 422 AKQAGRNRV 430


>gi|241762936|ref|ZP_04760999.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
 gi|241368111|gb|EER62316.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
          Length = 350

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 111/256 (43%), Gaps = 31/256 (12%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLT---------------PFYGLEYILVENLSLV 72
           +++F++  S+ + T+  +  I     GL                   G E+    ++ ++
Sbjct: 86  LMHFNLLPSVLLITLTVVDKITTGIRGLWLRSLPGMAVGMLAGGALTGFEWAPTTSMPVI 145

Query: 73  IISITISLL----LGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISS 121
           I  + +  L    +   S  +++++      + +L RID L+GL           A +  
Sbjct: 146 IACLPVMALHTVSVSVASYRLIRQVSRQNQLLDELRRIDALTGLYGRGHWQEQAEAALRL 205

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +  E   +V  DID+FKQIND  GH VGD+ I  L+  +     T    GR GG+EFA
Sbjct: 206 HHATGEPACLVMLDIDHFKQINDLHGHTVGDEAIRALAHIVRSNVRTTDCAGRYGGDEFA 265

Query: 182 AAALGSSEQEAAILANDLRKIIENSQ-INISSGPSIHITISAGIAERCHKE-PISTIIYR 239
               G    +A  +A    +I E  Q + +   P +  T S G+A   H+   +      
Sbjct: 266 IVLRGMHMDKALAVAQ---RICEQVQAMRLHDMPELQFTSSLGVAAADHRHSSLRAWTDA 322

Query: 240 ADQALYVAKKSGRNRV 255
           AD  LY AK SGRNRV
Sbjct: 323 ADAELYQAKASGRNRV 338


>gi|170723763|ref|YP_001751451.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas putida W619]
 gi|169761766|gb|ACA75082.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas putida W619]
          Length = 459

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 83/158 (52%), Gaps = 10/158 (6%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +  L           + LS    DID+FK+IND  GHP+GD+VI  L+
Sbjct: 300 DSLTGLYNHTHILQLLEDCSFRARREGQPLSFAMLDIDHFKKINDRHGHPMGDRVIKSLA 359

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218
             L        F+GR GGEEFA     ++   A  + +++R+    ++I   + P  +  
Sbjct: 360 LFLKQRLRKTDFIGRYGGEEFAIVMPNTALDAAHKVLDEIRRRF--AEILYPAQPCDLQC 417

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T SAG+ +   +    ++   AD+ALY AK +GRN VV
Sbjct: 418 TFSAGVVQLDDELDALSMASTADEALYRAKHAGRNCVV 455


>gi|170726877|ref|YP_001760903.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169812224|gb|ACA86808.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
          Length = 347

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 12/165 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS----YNEKLS---IVFFDIDYFKQINDNFGHPVGD 152
           +S +++ D L+ L N  AF   + S    Y +  S   ++  DID+FK  ND  GH +GD
Sbjct: 175 LSIVAQTDQLTSLFNRRAFEKEIESHMIHYKQDHSASCLLVVDIDHFKLFNDTHGHLIGD 234

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KV+A+++  L        FV R GGEEF      +   +A  +A  +R+ I N +++I  
Sbjct: 235 KVLAYVALALKKTVKGTDFVARYGGEEFVVLLPNTELNDALTVAELVRQKIANQKLSIGK 294

Query: 213 GPSIH----ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
               H    IT+S G++   + +   +   RAD+ALY AK SGRN
Sbjct: 295 EDK-HSLGSITVSVGVSTLHNSDDRESYFIRADEALYRAKSSGRN 338


>gi|219847712|ref|YP_002462145.1| diguanylate cyclase with GAF sensor [Chloroflexus aggregans DSM
           9485]
 gi|219541971|gb|ACL23709.1| diguanylate cyclase with GAF sensor [Chloroflexus aggregans DSM
           9485]
          Length = 367

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 79/157 (50%), Gaps = 17/157 (10%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN   F   L         YN  ++++  DID+FK IND FGH  GD+++  ++
Sbjct: 213 DPLTGLLNRRGFEQRLQEEIDRSLRYNVPMALLMVDIDHFKAINDTFGHVAGDEILRMVA 272

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEFA     +  +   IL   +R+ ++      ++ P + +T
Sbjct: 273 QLLRENVRRHDIVARYGGEEFAVILPATGFEGTPILGERIRRAVQQ-----AAWPYVPVT 327

Query: 220 ISAGIAERCHKEPIST---IIYRADQALYVAKKSGRN 253
           IS G A  C    ++    ++  AD ALY AK+SGRN
Sbjct: 328 ISVGGA--CCDATMTNATDLLTAADHALYDAKRSGRN 362


>gi|86361147|ref|YP_473034.1| hypothetical protein RHE_PF00417 [Rhizobium etli CFN 42]
 gi|86285249|gb|ABC94307.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 637

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 84/180 (46%), Gaps = 15/180 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L +S  ++  L+  D L+G++N  AF        +     N   S++  DID FK  ND 
Sbjct: 449 LRLSAEQLKNLAETDGLTGIVNRRAFDEAFARETAGSARKNTPFSLLMVDIDRFKAYNDT 508

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GHP GD+ +  +S  L      P   V R GGEEFA     +S + A I+A    + + 
Sbjct: 509 YGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFAVFLPDTSAKGAMIVAEQFARRLA 568

Query: 205 NSQINISSGPSIHITISAGIAERCH-----KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              I  S      +T S GI+  C      +   + ++  AD ALY AK  GRNR++  S
Sbjct: 569 QENIVHSGSEFGRVTASIGIS--CATGATLRTSPNRLLAEADAALYEAKTQGRNRILAHS 626


>gi|89898827|ref|YP_521298.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
 gi|89343564|gb|ABD67767.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
          Length = 520

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 16/178 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           L +L    +R+S  +R D L+G LN           +S++      L +   DID FK++
Sbjct: 346 LVKLHQELDRVSSQARHDPLTGALNRKGLEEAVNREVSNVRRKETPLCVALLDIDNFKKL 405

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILAND 198
           ND  GH  GD  +A L+     V      + R GGEEF       AL +  +    L  +
Sbjct: 406 NDALGHASGDVALAHLATVTREVMRPHDTLARYGGEEFVILMPDTALDNGIEAMTRLQRE 465

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           L      ++  ++    + IT SAG+A+    E   + I RADQA+Y+AK++G+NRV+
Sbjct: 466 L-----TTRFFLAGTEKVLITFSAGVAQLATDETGQSAIKRADQAMYLAKRAGKNRVL 518


>gi|76819816|ref|YP_337542.1| EAL/GGDEF domain-containing protein [Burkholderia pseudomallei
           1710b]
 gi|167819254|ref|ZP_02450934.1| EAL/GGDEF domain protein [Burkholderia pseudomallei 91]
 gi|167914364|ref|ZP_02501455.1| EAL/GGDEF domain protein [Burkholderia pseudomallei 112]
 gi|254193156|ref|ZP_04899591.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei S13]
 gi|254263037|ref|ZP_04953902.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1710a]
 gi|254300138|ref|ZP_04967584.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 406e]
 gi|76584289|gb|ABA53763.1| EAL/GGDEF domain protein [Burkholderia pseudomallei 1710b]
 gi|157810431|gb|EDO87601.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 406e]
 gi|169649910|gb|EDS82603.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei S13]
 gi|254214039|gb|EET03424.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1710a]
          Length = 688

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 4/127 (3%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186
           KL+I+F D+D FK IND+ GHP GD+V+   S +L+        V RLGG+EF       
Sbjct: 288 KLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESV 347

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245
           SS+ EAA +A D+ + +   + N   G ++ +T S GIA      +   T++  AD A+Y
Sbjct: 348 SSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGDTADTLLRHADAAMY 405

Query: 246 VAKKSGR 252
            AK+ GR
Sbjct: 406 AAKRGGR 412


>gi|330879721|gb|EGH13870.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 355

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 113/237 (47%), Gaps = 21/237 (8%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLE-----YILVENLSLVIISITISLL 81
            +I  S    ++    +F++   L +I L+P  G++     Y+ +  +   + SI + ++
Sbjct: 103 MIILCSTLLVVYTRDYLFVS--VLSWIILSPAQGIDTDSAAYVFM--MLFFVSSIALGVV 158

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDY 138
           L +     L+++    +R  +LS  D L+ +LN  A + +L  +   N     +  DID 
Sbjct: 159 LNHTYTRTLRKVLTLESRFRELSLTDDLTDILNRRALMLALDEHVANNSGSYFLMLDIDN 218

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND FGH  GD+V+  ++  L    G+  F GR+GGEEF      S E  A      
Sbjct: 219 FKTINDQFGHDAGDEVLRLMASCLQQTPGSLAF-GRMGGEEFGVILPVSGEPVACDYVLR 277

Query: 199 LRKIIENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           L   I  S       P++  +T SAG+A+       S ++  AD  +Y AK+ G++R
Sbjct: 278 LLDTIRRS-------PTVSPLTCSAGLADIDANSTSSQVLKTADVNMYQAKREGKDR 327


>gi|330808552|ref|YP_004353014.1| diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376660|gb|AEA68010.1| Putative diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 523

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 78/167 (46%), Gaps = 18/167 (10%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F  +L             LS++  DID+FK+ ND +GH  GD  +A ++
Sbjct: 348 DSLTGLANRRLFERALDIEFGRGARQRSPLSLIMLDIDFFKRYNDAYGHVAGDHCLAEVA 407

Query: 160 DQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             L            R GGEEFA     ++   A  LA  +R+ + +  I  S  P+ H+
Sbjct: 408 KVLKDCCHRKADLAVRYGGEEFAVLLPDTNLSGAMALAEQIRRSVIDKHITHSGSPTGHL 467

Query: 219 TISAGIAERCHK------EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           T+S G    C+       + I   I RAD ALY AK  GRNRV   S
Sbjct: 468 TVSLG----CYAFVPSGLDSIEVFIQRADAALYQAKHGGRNRVAVLS 510


>gi|229586486|ref|YP_002844987.1| response regulator PleD [Rickettsia africae ESF-5]
 gi|228021536|gb|ACP53244.1| Regulatory components of sensory transduction system [Rickettsia
           africae ESF-5]
          Length = 450

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 76/158 (48%), Gaps = 8/158 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F       I      + KL ++  DID FK +ND +GH  GDKV+  +S
Sbjct: 291 DGLTGLFNRRYFDIHLKQIIEKTNKESIKLYLLMCDIDNFKHVNDTYGHQAGDKVLTIVS 350

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHI 218
             L         + R GGEEF          +A   A  +R  IE    +I      +  
Sbjct: 351 RILKNTLRVTDLIARFGGEEFTILLTDIDISKAIETAERVRVKIEYMNFHIEDQIEPLKT 410

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           TIS G+ +   +E I + I RAD+A+Y AK +G+N+VV
Sbjct: 411 TISIGVTKYKKEESIESFIERADKAMYEAKTTGKNKVV 448


>gi|71735919|ref|YP_276815.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556472|gb|AAZ35683.1| GGDEF domain protein [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 432

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 32/228 (14%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F+ L    +   +L I+   + L+   I+ ++  E +       Q++  D L+GL    A
Sbjct: 206 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 255

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
               +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        R GG
Sbjct: 256 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAYRYGG 315

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218
           EEFA      +  E       +R+ I N +I   N  S P                S+ +
Sbjct: 316 EEFAIVFAAKTIDECMPHLEAIRETIANYEIQLRNKDSRPQDDQQGRQRRGGAQAGSVSV 375

Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           T+S G+AER   H+ P   ++  ADQALY AK +GRN VV +  +   
Sbjct: 376 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 422


>gi|114048814|ref|YP_739364.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113890256|gb|ABI44307.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 482

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 74/142 (52%), Gaps = 8/142 (5%)

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           +H A  S+ G+    + +V  DID+FK+IND  GH VGD ++  LS  L         V 
Sbjct: 342 DHRAATSTQGA----ICLVMLDIDFFKEINDTLGHAVGDTILMELSSVLQHCVRESDVVA 397

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEF      +S +    L   +   I+++     SG  + +T S GIA+    EP+
Sbjct: 398 RWGGEEFVILCHNTSLEAVKSLCQRIATAIKDNHF---SG-DVRLTCSFGIAKLAANEPM 453

Query: 234 STIIYRADQALYVAKKSGRNRV 255
            +   RAD+ALY AK  GR+++
Sbjct: 454 QSCFERADKALYQAKAQGRDQI 475


>gi|53717465|ref|YP_105413.1| EAL/GGDEF domain-containing protein [Burkholderia mallei ATCC
           23344]
 gi|67643727|ref|ZP_00442471.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia mallei GB8 horse 4]
 gi|124382703|ref|YP_001024617.1| EAL/GGDEF domain-containing protein [Burkholderia mallei NCTC
           10229]
 gi|126447769|ref|YP_001078949.1| EAL/GGDEF domain-containing protein [Burkholderia mallei NCTC
           10247]
 gi|167002113|ref|ZP_02267903.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei PRL-20]
 gi|254174526|ref|ZP_04881188.1| EAL/GGDEF domain protein [Burkholderia mallei ATCC 10399]
 gi|254204109|ref|ZP_04910468.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei FMH]
 gi|254209086|ref|ZP_04915433.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei JHU]
 gi|254355635|ref|ZP_04971915.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei 2002721280]
 gi|52423435|gb|AAU47005.1| EAL/GGDEF domain protein [Burkholderia mallei ATCC 23344]
 gi|124290723|gb|ABM99992.1| diguanylate cyclase (GGDEF)/EAL domain protein [Burkholderia mallei
           NCTC 10229]
 gi|126240623|gb|ABO03735.1| diguanylate cyclase (GGDEF)/EAL domain protein [Burkholderia mallei
           NCTC 10247]
 gi|147744993|gb|EDK52074.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei FMH]
 gi|147750309|gb|EDK57379.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei JHU]
 gi|148023728|gb|EDK82790.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei 2002721280]
 gi|160695572|gb|EDP85542.1| EAL/GGDEF domain protein [Burkholderia mallei ATCC 10399]
 gi|238525126|gb|EEP88555.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia mallei GB8 horse 4]
 gi|243062177|gb|EES44363.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei PRL-20]
          Length = 688

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 4/127 (3%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186
           KL+I+F D+D FK IND+ GHP GD+V+   S +L+        V RLGG+EF       
Sbjct: 288 KLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESV 347

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245
           SS+ EAA +A D+ + +   + N   G ++ +T S GIA      +   T++  AD A+Y
Sbjct: 348 SSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGDTADTLLRHADAAMY 405

Query: 246 VAKKSGR 252
            AK+ GR
Sbjct: 406 AAKRGGR 412


>gi|312946548|gb|ADR27375.1| putative diguanylate cyclase [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 558

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 9/185 (4%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           LL  Y+   ++  +++  + +   +  D L+ L N  A             ++    S++
Sbjct: 368 LLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAKLCQTHQHPFSVI 427

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G++  +A
Sbjct: 428 QVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEEFCVILPGANLTQA 487

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKS 250
           A +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+AK++
Sbjct: 488 AEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQA 547

Query: 251 GRNRV 255
           GRNRV
Sbjct: 548 GRNRV 552


>gi|311106475|ref|YP_003979328.1| sensory box protein 7 [Achromobacter xylosoxidans A8]
 gi|310761164|gb|ADP16613.1| sensory box protein 7 [Achromobacter xylosoxidans A8]
          Length = 466

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 10/163 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL------GSYNE--KLSIVFFDIDYFKQINDNFGHPVG 151
           +++++R+D L+G  N +  +  +      G + E    + +  D+DYFKQ+ND +GH  G
Sbjct: 298 LARMARVDSLTGCWNRAEILKRMEDRLADGRHGEGGPTTALMLDLDYFKQVNDRYGHLGG 357

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D  +    DQL         +GRLGGEEF      +    A  +   LR  +     +I 
Sbjct: 358 DVALRHFCDQLRTCLREGDSIGRLGGEEFLVLLADADAAVARAICERLRASLRQHPADI- 416

Query: 212 SGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRN 253
            G  + +++S GIA     +   S ++ RAD ALY AK+SGR+
Sbjct: 417 DGSVVTLSVSGGIAGFLPGDATASDVLRRADFALYQAKRSGRD 459


>gi|262165615|ref|ZP_06033352.1| GGDEF family protein [Vibrio mimicus VM223]
 gi|262025331|gb|EEY43999.1| GGDEF family protein [Vibrio mimicus VM223]
          Length = 525

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 19/206 (9%)

Query: 76  ITISLLLGYISGSILKE-------LFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSY 125
           + ISLLLGYI+  +L+E       L      +  L+  D L+G+ N  +F   +SS+ + 
Sbjct: 314 VIISLLLGYITRLLLEEKIRLEVMLDERTAELRYLAEHDSLTGIYNRRSFNNLLSSMLNS 373

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAA 184
            +  ++V FDID FKQIND+ GH VGD  +  + + +   +     FV R+GG+EFA  +
Sbjct: 374 GQPFTLVSFDIDCFKQINDSHGHLVGDDALVHVVNLVTQKLLPNDHFV-RMGGDEFAILS 432

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQA 243
             +  +  +     +R  +E + + I+ G  ++ ++I A I E   +   S +++  D  
Sbjct: 433 NVAERETLSNYLESIRATVERNPLAINQGSVALTVSIGASINEDLDE---SELLHSVDAQ 489

Query: 244 LYVAKKSGRNRVVC---FSDIENNTC 266
           LY++K  GRNRV     +S  E+N+ 
Sbjct: 490 LYLSKTLGRNRVSIAEQYSKAESNSA 515


>gi|153824843|ref|ZP_01977510.1| GGDEF family protein [Vibrio cholerae MZO-2]
 gi|149741561|gb|EDM55591.1| GGDEF family protein [Vibrio cholerae MZO-2]
          Length = 353

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 120/268 (44%), Gaps = 37/268 (13%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFI---ANIFLFYIGLTPFYGLEYILVE 67
           IW C       F P  F I+ S  F+ F+ + +F+   +NI            + + L +
Sbjct: 98  IWSC-------FVPILFYIFTSARFA-FVTSCLFLIIQSNI------------IYWQLQQ 137

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSL 122
             + +  S+ + L   YI   ++  ++    R     +  L+  D L+G  N  +  +S 
Sbjct: 138 TGAAISWSVLLHLCFAYIGIWVVAHVYEDNRRKIENSLLYLASRDPLTGAHNRLSLTTSF 197

Query: 123 GSYNE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
             +        L ++  D+D+FK IND FGH  GDKV+   +     V G      R+GG
Sbjct: 198 QHFERFNDQTSLCLLVIDLDFFKSINDQFGHDTGDKVLIETTRLFTQVVGDNNLY-RIGG 256

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTI 236
           EEF       S ++A  +   LR I+  SQ   + G   + +TIS G+ E    + ++ +
Sbjct: 257 EEFCVTLFDQSLEQAGRVCERLRAIV--SQHLFAFGEKRVQVTISIGVCEYQAGDQLNDL 314

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENN 264
           +  AD  LY AKK+GRN+V  F     N
Sbjct: 315 LKFADMELYRAKKAGRNQVRLFRHGSTN 342


>gi|312879189|ref|ZP_07738989.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM
           12260]
 gi|310782480|gb|EFQ22878.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM
           12260]
          Length = 576

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 82/173 (47%), Gaps = 12/173 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           ++EL      + + + +D L+  LN  +    L         Y   L+++  DID FK I
Sbjct: 406 VEELDEKMEELRRSASLDPLTEALNRRSIERELMAETRRADRYGNPLTVILCDIDRFKSI 465

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +   S  +     T    GR GGEEF   A       AA LA  LR  
Sbjct: 466 NDRYGHQEGDCALRAFSRIVRGCLRTGDHFGRWGGEEFLVVAPVDGPGGAA-LAEKLRLE 524

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E     ++    +  T S G+A     EP  T++ RAD+A+Y AK+SGRNRV
Sbjct: 525 LET----VTRATPVPFTASFGVAVYVPGEPPETLVQRADEAMYRAKESGRNRV 573


>gi|307946815|ref|ZP_07662150.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Roseibium sp. TrichSKD4]
 gi|307770479|gb|EFO29705.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Roseibium sp. TrichSKD4]
          Length = 777

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 16/178 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           SI  E   +   +  L+  D L+ L N   F   L S        NE+L++VF D+D FK
Sbjct: 325 SIAIEKMRADREVLHLAHHDMLTALPNRLKFKEKLDSLLVRCRNKNEQLALVFVDLDQFK 384

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA--ND 198
            +ND+FGH +GD+V+  ++ +L  +      V R GG+EF       S  + A++    D
Sbjct: 385 VVNDSFGHSIGDEVLKIIAKRLKTLSSKTDSVFRFGGDEFVILVENESVNKDALVPFLVD 444

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRN 253
           LRK +  S+  +  G + H+T S G+A  C  +      T++ RAD A+Y AK +GR+
Sbjct: 445 LRKSL--SEAILVHGRTFHVTASLGVA--CFPDDGTDAETLVGRADSAMYKAKDAGRD 498


>gi|296102184|ref|YP_003612330.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295056643|gb|ADF61381.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 410

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 77/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F       N       ++ S++  D D+FK IND FGH  GD+V+  LS
Sbjct: 256 DAMTGLLNRRQFYIIAEQMNLTHLPLQQQFSLLLVDTDHFKNINDVFGHLKGDEVLIALS 315

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L        FV R GGEEF      +S   A  +A  +R  +  ++I+I   P    T
Sbjct: 316 RTLEACSRKEDFVFRWGGEEFVILLPRTSLDTALQIAETIRAAV--ARISIPGLPR--FT 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRN+V+ 
Sbjct: 372 VSIGVARHNQDESIDDLFKRVDDALYRAKNDGRNKVLA 409


>gi|116249172|ref|YP_765013.1| response regulator [Rhizobium leguminosarum bv. viciae 3841]
 gi|115253822|emb|CAK12217.1| putative response regulator/GGDEF domain transcriptional regulator
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 642

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 19/188 (10%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L +S  ++  L+  D L+G++N  AF        +     N   S++  DID FK  ND 
Sbjct: 454 LRLSAEQLRNLAETDGLTGIVNRRAFDEAFARETAGSARKNTPFSLLMVDIDRFKAYNDT 513

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GHP GD+ +  +S  L      P   V R GGEEF      +S + A I+A    +++ 
Sbjct: 514 YGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFVVLLPATSAKGAMIVAEQFARLLS 573

Query: 205 NSQINISSG-------PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              I + +G        SI I+ + G   R +    + ++  AD ALY AK  GRNR++ 
Sbjct: 574 QENI-VHTGSEFGRVTASIGISCATGATLRLNP---NRLLIEADAALYDAKTQGRNRILA 629

Query: 258 FSDIENNT 265
            S  E ++
Sbjct: 630 HSPEERHS 637


>gi|89900249|ref|YP_522720.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
 gi|89344986|gb|ABD69189.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
          Length = 636

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 97/184 (52%), Gaps = 15/184 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           L +L ++ +++ +LS +D L+ + N + F  +L   + +       LS++  D+D+FK +
Sbjct: 452 LGQLKLANDQLQRLSNMDGLTQIGNRAFFDRALALEHRRADRQKSPLSLIMIDVDHFKLV 511

Query: 143 NDNFGHPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           ND++GH  GD   + +A L    +   G    + R GGEEF    + S++Q++  LA   
Sbjct: 512 NDSYGHMGGDACLRAVAHLLQPRIQRVGD--VLARYGGEEFVILLVNSNQQDSVALAEGF 569

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257
           R  IE   +    G +IH+T S G+A     + +S   ++  AD+ALY AK  GRN V  
Sbjct: 570 RADIEQLHVPFEGG-TIHVTASFGVACGIPDQYLSPQELLAHADKALYQAKHDGRNCVRS 628

Query: 258 FSDI 261
            + I
Sbjct: 629 VATI 632


>gi|88797308|ref|ZP_01112898.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Reinekea sp. MED297]
 gi|88780177|gb|EAR11362.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Reinekea sp. MED297]
          Length = 650

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 87/184 (47%), Gaps = 13/184 (7%)

Query: 83  GYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFF 134
           G++ G       I+Y + + +LS+ D L+GL N       LG        Y +  SI+  
Sbjct: 468 GHVIGYTATANDITYQKEVERLSQTDPLTGLANRMKLDLELGREWARFYRYQQHFSIIIV 527

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D+FK IND +GH  GD V+   +D L  +  T   +GR GGEEF      +    A +
Sbjct: 528 DLDHFKTINDQYGHQEGDLVLKKAADVLSSLLRTTDIIGRWGGEEFLILLPQTDADTAYL 587

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
           +A  LR  +   +   S  P    T S G A           +I  AD+ALY AK SGRN
Sbjct: 588 VAEKLRAGLPLIEGLRSPAP----TGSFGTASTSVFTSSAEDLIRAADRALYQAKASGRN 643

Query: 254 RVVC 257
           RV+ 
Sbjct: 644 RVMV 647


>gi|297582609|ref|YP_003698389.1| diguanylate cyclase [Bacillus selenitireducens MLS10]
 gi|297141066|gb|ADH97823.1| diguanylate cyclase [Bacillus selenitireducens MLS10]
          Length = 534

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 74/160 (46%), Gaps = 9/160 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N    +  L    +K S       ++  DID FK+IND FGH  GD V+
Sbjct: 375 LANTDQLTGLFNRHYMMKQLEDNRQKGSGFKQPAILILLDIDRFKRINDEFGHQTGDAVL 434

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
           +     L  + G+     R GGEEF     G ++ E    A  +R  IE      S G S
Sbjct: 435 SETGALLHKLAGSHGTAARWGGEEFVLYLPGYAKAEGTAFAEQVRSAIETHA--YSKGLS 492

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  +I     E      I  ++ RAD  +Y AK++GRN V
Sbjct: 493 VTASIGVSSTEDPDTPHIDALVQRADHKMYEAKEAGRNLV 532


>gi|225849752|ref|YP_002729986.1| signal transduction response regulator [Persephonella marina EX-H1]
 gi|225646225|gb|ACO04411.1| signal transduction response regulator [Persephonella marina EX-H1]
          Length = 683

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N   F       +S     N K S++  D+D FK IND +GH +GD V+  ++
Sbjct: 270 DPLTDLYNRRIFEDLLKYEVSRAKRKNYKFSLILIDLDNFKYINDTYGHHIGDIVLKSVA 329

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           D L         V R+GG+EF      +  ++A I+A  +RK +EN+++ I  G  I ++
Sbjct: 330 DILEASIRDGDLVARIGGDEFVILLSETELEKALIVAERIRKNLENNKLCIFEGAVISVS 389

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+ E   H      ++   D ALY AK  G+N+V
Sbjct: 390 ASLGVVEFPTHGTTKEELMMVVDNALYRAKDLGKNKV 426


>gi|218462597|ref|ZP_03502688.1| putative two-component response regulator protein [Rhizobium etli
           Kim 5]
          Length = 430

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 94/178 (52%), Gaps = 11/178 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDN 145
           EL  +  R+ +L+R D L+G+ N    + +L      G     ++++  DID+FK +NDN
Sbjct: 239 ELADANARLERLARTDPLTGIANRRWMMETLESLWRHGRETGIVAMLMCDIDHFKALNDN 298

Query: 146 FGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            GH  GD+ +  ++  +   V      V R GGEEF        E++A  +A  +R+ +E
Sbjct: 299 LGHGEGDRCLVKIAGIIQSCVRADRDLVSRHGGEEFLIVLPDVEEEDAVAVAKRIRESVE 358

Query: 205 NSQI-NISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCF 258
            + + N SS     +T+S G+A +   +    ++ + + AD ALY AK++GRN+V  F
Sbjct: 359 AAALPNPSSSVGPSVTLSVGVAFKSAVDTGVSLADLQHEADMALYRAKEAGRNQVSVF 416


>gi|157144712|ref|YP_001452031.1| hypothetical protein CKO_00438 [Citrobacter koseri ATCC BAA-895]
 gi|157081917|gb|ABV11595.1| hypothetical protein CKO_00438 [Citrobacter koseri ATCC BAA-895]
          Length = 520

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 80/155 (51%), Gaps = 8/155 (5%)

Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL+N  A    L  Y     + +++  DID FK +ND FGH +GD  +  L+  L 
Sbjct: 369 DPLTGLVNRRAAEKLLAEYEHQQRQFAVISLDIDRFKAVNDTFGHDIGDVTLKALAQLLK 428

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                     R+GGEEF      +S + AA +A  LRK +  ++I        HITIS G
Sbjct: 429 RSCRKNDTACRMGGEEFMMFFPETSVEAAADIAERLRKEVAAAKIETVG----HITISLG 484

Query: 224 IA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +       + +S  + RAD+ +Y AK++GRN+VV 
Sbjct: 485 VTVWPSGVDSVSQALKRADELMYQAKQAGRNQVVA 519


>gi|146310517|ref|YP_001175591.1| diguanylate cyclase AdrA [Enterobacter sp. 638]
 gi|145317393|gb|ABP59540.1| diguanylate cyclase [Enterobacter sp. 638]
          Length = 371

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 109/223 (48%), Gaps = 26/223 (11%)

Query: 48  IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107
           I L   G TP + L  + +  LSL ++ +   L+  ++S      L     R+  +S  D
Sbjct: 156 ITLQLTGTTPAFTLTPLELW-LSLPVL-VLYPLIFAWVSHQTAIRLAEHKRRLELMSTRD 213

Query: 108 CLSGLLNHSAF-ISSLGSYNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            ++G+ N   + I     Y+  L      +I+  DID+FK IND +GH VGD+ I  ++ 
Sbjct: 214 GMTGVFNRRHWEILLRNEYDACLRGHRDAAILIIDIDHFKDINDTWGHDVGDEAIIAVTR 273

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHIT 219
           QL +       +GR GG+EFA    G+   E+AI A  + ++ E  + + +   P + + 
Sbjct: 274 QLQLTLRAGDLIGRFGGDEFAVVMSGTP-AESAIAA--MSRVHERLAALTLPCAPQVRLR 330

Query: 220 ISAGIAERCHKEPISTII--YR-----ADQALYVAKKSGRNRV 255
           IS G+A      P++     YR     AD ALY AK +GRNR 
Sbjct: 331 ISVGVA------PLTPEFGHYREWLKAADVALYKAKNAGRNRT 367


>gi|150019427|ref|YP_001311681.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052]
 gi|149905892|gb|ABR36725.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052]
          Length = 360

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 103/204 (50%), Gaps = 10/204 (4%)

Query: 63  YILVENLSLVIISITISLLLGYISG--SILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           YI+VE+     ++I + L L  I+   +I  E  + Y  + ++++ D L G+ N   F  
Sbjct: 152 YIVVEHNLYKFMNIELKLFLRSIANQIAIAIENSLLYKELEKINQRDPLLGIYNRKYFFE 211

Query: 121 SLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            L        N+K +IV  DID FK++ND +GH  GDK++   ++ +           R 
Sbjct: 212 FLEKKENRKLNDKFAIVMIDIDDFKKVNDTYGHQFGDKILVNTANIIKCGIDKNDIFARY 271

Query: 176 GGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPI 233
           GGEEF       +SE         +R+ IE S+IN  +G    IT S GI+    +   +
Sbjct: 272 GGEEFILYISDFTSEDNVYSKIEAIRRTIEGSKINF-NGRDESITASFGISFFPLNGTDL 330

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
           + +I +AD  LY AKKSG+NRV+ 
Sbjct: 331 NELISKADDLLYKAKKSGKNRVLS 354


>gi|327393791|dbj|BAK11213.1| diguanylate cyclase YdaM [Pantoea ananatis AJ13355]
          Length = 524

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 89/185 (48%), Gaps = 16/185 (8%)

Query: 84  YISGSILKELFISY-NRISQLSRI-------DCLSGLLNHSAFISSLGSY---NEKLSIV 132
           Y     LK+ F++Y N I++   I       D L+ L N   F      Y     + S+ 
Sbjct: 335 YKESDRLKKSFLAYSNTINKTLAILRDDAITDHLTKLYNRRGFEQLTAPYLSAKNEHSLA 394

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            FDIDYFK+IND++GH +GDK +  ++  L     T   V R GGEEF      +   EA
Sbjct: 395 SFDIDYFKRINDHYGHDIGDKTLVAVAMFLKKGCRTNDIVCRFGGEEFVVFFPNTQISEA 454

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
             +AN +R+ I  +Q +        +TISAG+     H   I   +   DQ LY AK  G
Sbjct: 455 ESIANRIREHIACAQFSEVG----KMTISAGVESLAHHNNDIEETLLSVDQWLYQAKHEG 510

Query: 252 RNRVV 256
           RNRVV
Sbjct: 511 RNRVV 515


>gi|209546887|ref|YP_002278805.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209538131|gb|ACI58065.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 435

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 94/179 (52%), Gaps = 12/179 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEK-----LSIVFFDIDYFKQIND 144
           EL  +  R+ +L+R D L+G+ N    + +L     N++      +++  DID+FK +ND
Sbjct: 239 ELADANARLERLARTDPLTGIANRRWMMETLEGLWRNDRETGVVAAMLMCDIDHFKALND 298

Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GH  GD+ +  ++  +   V      V R GGEEF        E EA  +A  +R+ +
Sbjct: 299 KLGHGEGDRCLVKVAGIIQSCVRADRDLVSRHGGEEFLIVLPDVDEDEAIAVAKRIRESV 358

Query: 204 ENSQI-NISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCF 258
           E + + N SSG    +T+S G+A +   +    ++ + + AD ALY AK++GRN+V  F
Sbjct: 359 EAAALPNPSSGVGPSVTLSVGVALKSALDADISLANLQHEADMALYRAKEAGRNQVCVF 417


>gi|157962792|ref|YP_001502826.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157847792|gb|ABV88291.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
          Length = 518

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 86/182 (47%), Gaps = 12/182 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           LG  + S  + LF       +L+ +D L+ L N SA    +           + L +   
Sbjct: 339 LGKETDSYKERLFEQ----QKLNLLDSLTQLPNRSALEERMDIEYRNYKRTKQPLWVAVA 394

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK IND+FGH  GDK +  ++  L        FV R GGEEF       +E +   
Sbjct: 395 DIDHFKTINDSFGHSTGDKTLQVIAMALKNALRESEFVARYGGEEFVLLLPNVAESDIQP 454

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           L N +R+ +++      +   I +T+S G A+    E I+    RAD ALY AK   R+R
Sbjct: 455 LLNRVREKVKSIPFKFKNQ-RITVTVSIGAAQIIENELITETFDRADAALYKAKNESRDR 513

Query: 255 VV 256
           V+
Sbjct: 514 VI 515


>gi|332525874|ref|ZP_08402015.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2]
 gi|332109425|gb|EGJ10348.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2]
          Length = 364

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 80/172 (46%), Gaps = 10/172 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL  +  RI  L+  D L+GLLN  A +  L         +   L +   D+D FKQIND
Sbjct: 186 ELSQALERIRLLATRDTLTGLLNRRAAMDELRRAAGQAARHERPLVVALVDLDRFKQIND 245

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+V+   +D           V R GGEEF      +SE EA       R +  
Sbjct: 246 GHGHQTGDRVLQAFADVAQRELRAEDCVSRWGGEEFLFILPDTSEDEACACLE--RVLAV 303

Query: 205 NSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++I +   P+   I  SAG+A       +   I RAD+A+Y AK +GR R+
Sbjct: 304 CAEIIVDGLPTNWRIGFSAGVARCLGPADLEPAIERADRAMYRAKLAGRGRI 355


>gi|297579923|ref|ZP_06941850.1| predicted protein [Vibrio cholerae RC385]
 gi|297535569|gb|EFH74403.1| predicted protein [Vibrio cholerae RC385]
          Length = 461

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 7/158 (4%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           LS  D L+ + N   F+  L +  +    ++++ FD+D FK INDNFGH +GD+VI F++
Sbjct: 301 LSNTDSLTNIHNRRYFMMQLNNIQKTQCGITLIIFDLDNFKSINDNFGHDLGDQVIQFVA 360

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-I 218
            Q   +      + R+GGEEFA  A   + + A   A  L   I     + ++ P +  +
Sbjct: 361 RQAKELISNDQTIARIGGEEFAVIACFPTVETAENFAQTLVTTIREQ--SRATFPQLGLV 418

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T+S G+A    K   S  +  AD ALY AK +G+++VV
Sbjct: 419 TVSIGLA-YYPKPQESYDLVSADNALYQAKNAGKDQVV 455


>gi|148545852|ref|YP_001265954.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas putida F1]
 gi|148509910|gb|ABQ76770.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas putida F1]
          Length = 451

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 83/158 (52%), Gaps = 10/158 (6%)

Query: 107 DCLSGLLNHSAFIS-----SLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +      S  +  E+  LS    DID+FK+IND  GHP+GD+VI  L+
Sbjct: 292 DSLTGLYNHTHILQLLEDCSFRARREQHPLSFAMLDIDHFKKINDRHGHPMGDRVIKSLA 351

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218
             L        F+GR GGEEFA     ++   A  + +++R+   +  I   + P  +  
Sbjct: 352 LFLKQRLRKTDFIGRYGGEEFAIVMPNTALDAAHKVLDEIRRRFAD--ILYPAQPRDLQC 409

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T SAG+ +        T+   AD+ALY AK +GRN VV
Sbjct: 410 TFSAGVVQLDEGLDALTMASAADEALYRAKHAGRNCVV 447


>gi|300855785|ref|YP_003780769.1| GGDEF domain-containing protein [Clostridium ljungdahlii DSM 13528]
 gi|300435900|gb|ADK15667.1| GGDEF domain containing protein [Clostridium ljungdahlii DSM 13528]
          Length = 570

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 82/159 (51%), Gaps = 7/159 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           + ++ L + + + G+LN    I    +  E  SI+ FD+DYFK INDN+GH  GDKV+  
Sbjct: 418 DDLTGLYKRNYIEGILNE--VIKKYINEGEIFSIMMFDVDYFKLINDNYGHLQGDKVLTD 475

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +S  +    G   + GR GGEEF    L +++QE  +   ++ + I N          I 
Sbjct: 476 ISKVITECIGDTGYAGRYGGEEF-IVILPNTKQEGLV---EIGERIRNKINTFPWEDGIK 531

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +TIS G+ E      +  I    D  LY AK SGRN++V
Sbjct: 532 VTISGGLYENKSNTNMECIKI-VDDLLYEAKNSGRNKIV 569


>gi|298493108|ref|YP_003723285.1| response regulator receiver modulated diguanylate cyclase ['Nostoc
           azollae' 0708]
 gi|298235026|gb|ADI66162.1| response regulator receiver modulated diguanylate cyclase ['Nostoc
           azollae' 0708]
          Length = 338

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 86/162 (53%), Gaps = 11/162 (6%)

Query: 106 IDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+G+ N   F   L S  ++L       S++  D+D+FK  ND +GH  GD  +  +
Sbjct: 171 LDGLTGVANRRKFDEYLNSEWQRLAREKLPLSLLLCDVDFFKNYNDTYGHLTGDDCLKQI 230

Query: 159 SDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI 216
           +  L +    P   + R GGEEFA     ++++ A  LA D+R+ + N +I +  S    
Sbjct: 231 AKTLKLSVRRPSDLLARYGGEEFAVILSNTNDKVAIYLAEDIRQKVYNLKIPHAQSKVDN 290

Query: 217 HITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
           ++T+S G+A       I+  T+I   DQALY AK  GRNR+V
Sbjct: 291 YVTLSIGVATIFPNMQIAPNTLIEVGDQALYTAKAQGRNRIV 332


>gi|218781542|ref|YP_002432860.1| diguanylate cyclase with PAS/PAC sensor [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762926|gb|ACL05392.1| diguanylate cyclase with PAS/PAC sensor [Desulfatibacillum
           alkenivorans AK-01]
          Length = 299

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 7/161 (4%)

Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + QL  ID L+ L N          F++    Y+    ++F D+D+FK +ND FGH VGD
Sbjct: 134 LEQLVLIDNLTMLSNRRHVEAELDRFLTEKQRYDLSFGVLFLDLDHFKNVNDTFGHNVGD 193

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  +   L          GR GGEEF              L   +R ++  + IN   
Sbjct: 194 LVLKTVGATLKSCARPYDTFGRWGGEEFIGLIRNIDAPNLRGLGERIRGLVAATMINTPC 253

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           G ++ +T S G      ++ + +II RAD+ LY +K SGRN
Sbjct: 254 GKTLQVTASIGGTTARQEDDMESIIARADKNLYCSKNSGRN 294


>gi|222112641|ref|YP_002554905.1| diguanylate cyclase [Acidovorax ebreus TPSY]
 gi|221732085|gb|ACM34905.1| diguanylate cyclase [Acidovorax ebreus TPSY]
          Length = 395

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 78/158 (49%), Gaps = 10/158 (6%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL+N  + I +L           E  +++  DID+FK +ND+ GH  GD V+  ++
Sbjct: 222 DALTGLVNRRSLIMALERDVARAVRLREPYAVMLVDIDHFKFVNDSHGHLAGDSVLRHVA 281

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           D L         VGR GGEEF      +    A  LA  LR+ +E     +  G  I +T
Sbjct: 282 DLLRTRLRAQDLVGRYGGEEFMVLLPHTPLGGALELAETLRRAVERLPC-VGGGKDIPVT 340

Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S G+        +    ++  AD+ALY AK +GRNRV
Sbjct: 341 VSIGVCGGPLQPADGWDRLVQGADEALYAAKLAGRNRV 378


>gi|212639310|ref|YP_002315830.1| diguanylate cyclase/phosphodiesterase [Anoxybacillus flavithermus
           WK1]
 gi|212560790|gb|ACJ33845.1| Multidomain signal transduction protein, diguanylate
           cyclase/phosphodiesterase (contains GGDEF and HD-GYP
           domains) [Anoxybacillus flavithermus WK1]
          Length = 609

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 95/199 (47%), Gaps = 22/199 (11%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNE-- 127
           +V++SIT   +L +            Y  ++     D L+GL NH  F   L   + E  
Sbjct: 213 VVLLSITFGKVLEW------------YQEMANQVNKDYLTGLYNHGYFKDYLKELFRETK 260

Query: 128 ----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAA 182
               + SI F D+D FK+ ND  GH  GD+++ F+ + L          V R GGEEFA 
Sbjct: 261 KTGGQFSIAFLDLDDFKKYNDYHGHVQGDRLLKFVGEFLRNETKDLGCIVARYGGEEFAI 320

Query: 183 AALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAE-RCHKEPISTIIYRA 240
           A    ++ EA    + LRK + ++  + +   P   I+ S G+AE        S ++++A
Sbjct: 321 ALPRLTKHEAVAFMDQLRKKLNDTPFDGVDRLPYRCISFSCGVAEYESDMYEESELLHKA 380

Query: 241 DQALYVAKKSGRNRVVCFS 259
           DQALY +K  G+N V  + 
Sbjct: 381 DQALYYSKAQGKNNVQLYD 399


>gi|163783099|ref|ZP_02178094.1| Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF)
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881779|gb|EDP75288.1| Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF)
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 218

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAFISSLG-SYNE------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N    ++ L   +N        LS+   D+D FK IND +GH  GD+V+  L+
Sbjct: 64  DPLTGLPNRREIMNFLDFEFNRAKRNGTPLSVAVIDLDDFKFINDTYGHVAGDEVLKSLA 123

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +     +   VGR GGEEF      +    A  +   LR+++E +       P   ++
Sbjct: 124 SLIRRNLRSTDMVGRFGGEEFVVVMPDTPLNTAVKVMERLRRVVEETYFE----PIGSVS 179

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IS G+A+    + +S ++ RAD  LY AK+ G+NRV+ 
Sbjct: 180 ISVGVAQLREGDDVSNLLSRADGKLYQAKREGKNRVLA 217


>gi|316940010|gb|ADU74044.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum DSM
           1313]
          Length = 559

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 13/167 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y R+ +++ ID L+G+ N   F   L          N  LS+   DID+FK+ ND FGH 
Sbjct: 390 YQRMHEMATIDSLTGIYNRLYFQERLREEFANAKKENYDLSLAIMDIDHFKRFNDTFGHL 449

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GDKV+  ++  +     +   + R GGEEF      +S +EA      LR I+  + I 
Sbjct: 450 FGDKVLKHIAHLMKKSLRSGDIIARYGGEEFVILLPRTSVKEAYDKVERLRNIVAKTTIK 509

Query: 210 ISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRN 253
                   +T+S G++   E  + E  S ++  AD ALY AK+SGRN
Sbjct: 510 -DELVEASVTVSFGVSSYPEFANTE--SELLKTADNALYDAKESGRN 553


>gi|24373687|ref|NP_717730.1| response regulator [Shewanella oneidensis MR-1]
 gi|24348043|gb|AAN55174.1|AE015654_11 response regulator [Shewanella oneidensis MR-1]
          Length = 544

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 12/159 (7%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLNH+         I+     N  + I   D+D+FKQ+ND +GH  GDKV+   +
Sbjct: 384 DSLTGLLNHTQILVAARHCINLAKRANSSVCIAMLDLDHFKQVNDTYGHSGGDKVLLAFA 443

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L        F+GR GGEEF                N +R+   N  + +  G    +T
Sbjct: 444 HLLQQSLRAADFMGRYGGEEFMLVIPDMPAPLVIAKVNAIRESFSNI-VFVEEGAEFKVT 502

Query: 220 ISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +S G+A    CH+      +  AD+ LY AK++GRNR++
Sbjct: 503 LSGGLAFSTECHE--FQECLLLADKNLYEAKRTGRNRII 539


>gi|78048527|ref|YP_364702.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036957|emb|CAJ24657.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 375

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 13/163 (7%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GL N  AF  +L +  E+       LS+   D+D+FK +ND  GH  GD V+ 
Sbjct: 219 TRTDPLTGLPNRRAFAVALAAATEQTRAVGQPLSVALLDVDHFKTVNDVHGHDQGDAVLR 278

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            LS  L         + R GGEEF      +   +A +    LR+ +    I      ++
Sbjct: 279 ELSALLRAHMAGAGTIARYGGEEFVLLLPNTDLLQARVQCEYLRQSVAAMTI------AL 332

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +T+S G+A    +E +  +I RADQALY AK+ GR++VV   
Sbjct: 333 PVTVSIGVATLYPQESVEAVIKRADQALYAAKRGGRDQVVALE 375


>gi|329936157|ref|ZP_08285950.1| hypothetical protein SGM_1442 [Streptomyces griseoaurantiacus M045]
 gi|329304267|gb|EGG48147.1| hypothetical protein SGM_1442 [Streptomyces griseoaurantiacus M045]
          Length = 215

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 78/159 (49%), Gaps = 12/159 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +R    +R D L+GL     F     +   + +  +V  D+D FK IND FGH  GD ++
Sbjct: 26  HRCLNTARRDPLTGLRTRDGFTRRATALLRDPRAVVVLADVDRFKHINDTFGHAAGDALL 85

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAAL--GSSEQEAAILANDLRKIIENSQINISSG 213
              +D+L    G     GRLGG+EFAA  L  G++    A+L   L + +          
Sbjct: 86  KATADRLAHHVGRTGVAGRLGGDEFAAVLLDDGTAADTLAVLHAVLARSVGGQD------ 139

Query: 214 PSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKS 250
           P++  T+S G         E + T++ RAD+A+Y AK+S
Sbjct: 140 PAVRTTVSLGWVRAADFPGEQLPTLLRRADEAMYAAKQS 178


>gi|289650648|ref|ZP_06481991.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 420

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 32/228 (14%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F+ L    +   +L I+   + L+   I+ ++  E +       Q++  D L+GL    A
Sbjct: 194 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 243

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
               +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        R GG
Sbjct: 244 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAYRYGG 303

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218
           EEFA      +  E       +R+ I N +I   N  S P                S+ +
Sbjct: 304 EEFAIVFAAKTIDECMPHLEAIRETIANYEIQLRNKDSRPQDDQQGRQRRGGAQAGSVSV 363

Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           T+S G+AER   H+ P   ++  ADQALY AK +GRN VV +  +   
Sbjct: 364 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 410


>gi|91223416|ref|ZP_01258681.1| putative GGDEF family protein [Vibrio alginolyticus 12G01]
 gi|91191502|gb|EAS77766.1| putative GGDEF family protein [Vibrio alginolyticus 12G01]
          Length = 306

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 8/167 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +   S+ID L+ + N   F   L          N   +++ FD+D+FK IND  GH  GD
Sbjct: 137 LRHQSQIDALTNIYNRRVFFEKLTEEVIKAQEPNYHSALLLFDLDFFKVINDKRGHDAGD 196

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  L+D +  +        R+GGEEFA     +S   A  +  ++R  I+N Q     
Sbjct: 197 YVLETLADLVSHLLVKDEIFARVGGEEFAIILPETSLSAAKEVGEEVRSHIQNCQFEFEK 256

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              I +T+S G+ E    E    +   AD+ALY AK++GRN V    
Sbjct: 257 -IEIPVTVSVGVVEIGRNETTKRLYAHADKALYAAKRNGRNCVATLD 302


>gi|52141448|ref|YP_085381.1| sensory box/GGDEF family protein [Bacillus cereus E33L]
 gi|118479248|ref|YP_896399.1| sensory box/GGDEF family protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|229093102|ref|ZP_04224224.1| Sensory box/GGDEF family protein [Bacillus cereus Rock3-42]
 gi|51974917|gb|AAU16467.1| possible sensory box/GGDEF family protein [Bacillus cereus E33L]
 gi|118418473|gb|ABK86892.1| sensory box/GGDEF family protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|228690251|gb|EEL44044.1| Sensory box/GGDEF family protein [Bacillus cereus Rock3-42]
          Length = 431

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ ID L+ + N   F   L +        NE ++++ FDID FK +ND +GH 
Sbjct: 262 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAVNDTYGHD 321

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 322 FGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 380

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             SG S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 381 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCIY 426


>gi|15641607|ref|NP_231239.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|153818146|ref|ZP_01970813.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|227081752|ref|YP_002810303.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|229508456|ref|ZP_04397959.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229511472|ref|ZP_04400951.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229518612|ref|ZP_04408055.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229607863|ref|YP_002878511.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254848717|ref|ZP_05238067.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255744969|ref|ZP_05418919.1| GGDEF domain protein [Vibrio cholera CIRS 101]
 gi|262161745|ref|ZP_06030763.1| GGDEF domain protein [Vibrio cholerae INDRE 91/1]
 gi|298498318|ref|ZP_07008125.1| GGDEF family protein [Vibrio cholerae MAK 757]
 gi|9656110|gb|AAF94753.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|126511332|gb|EAZ73926.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|227009640|gb|ACP05852.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|229343301|gb|EEO08276.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229351437|gb|EEO16378.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229354410|gb|EEO19333.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229370518|gb|ACQ60941.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254844422|gb|EET22836.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255737440|gb|EET92835.1| GGDEF domain protein [Vibrio cholera CIRS 101]
 gi|262028477|gb|EEY47132.1| GGDEF domain protein [Vibrio cholerae INDRE 91/1]
 gi|297542651|gb|EFH78701.1| GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 353

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 7/172 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGD 152
           N +  L+  D L+G  N  +  +S   +        L ++  D+D+FK IND FGH  GD
Sbjct: 173 NSLLYLASRDPLTGAHNRLSLTTSFQHFERFSDQTSLCLLVIDLDFFKSINDQFGHDTGD 232

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KV+   +     V G      R+GGEEF       S ++A  +   LR I+         
Sbjct: 233 KVLIETTRLFTQVVGDNNLY-RIGGEEFCVTLFDQSLEQAGRVCEHLRAIVSQHLFAFRE 291

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
              + +TIS G+ E    + ++ ++  AD  LY AKK+GRN+V  F     N
Sbjct: 292 -KRVQVTISIGVCEYQAGDQLNDLLKFADMELYRAKKAGRNQVRLFRHGSTN 342


>gi|308125816|ref|ZP_07663530.1| response regulator [Vibrio parahaemolyticus K5030]
 gi|308111537|gb|EFO49077.1| response regulator [Vibrio parahaemolyticus K5030]
          Length = 404

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 77/162 (47%), Gaps = 11/162 (6%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAF 157
           +RID L+  LN +A I ++ S   K        +   D+D FK IND +GHP GD V+  
Sbjct: 229 ARIDSLTCALNRTAIIETIKSQTSKTHQEMRYVLALIDLDNFKAINDTYGHPTGDLVLKH 288

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +   + V      ++GRLGGEEF        E +       L K I   QI       + 
Sbjct: 289 VCQSIRVKLNKGEYIGRLGGEEFVLLLKNVDEIDVPFRVQSLHKTISEKQIKTERNEDLR 348

Query: 218 ITISAGIAERCHKEPISTI--IYR-ADQALYVAKKSGRNRVV 256
           +T  A +A      P++    +Y   DQALY AK++G+N VV
Sbjct: 349 VT--ASLAYLSTSMPLTNFDELYSILDQALYQAKRNGKNAVV 388


>gi|125973797|ref|YP_001037707.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum ATCC
           27405]
 gi|125714022|gb|ABN52514.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum ATCC
           27405]
          Length = 550

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 13/167 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y R+ +++ ID L+G+ N   F   L          N  LS+   DID+FK+ ND FGH 
Sbjct: 381 YQRMHEMATIDSLTGIYNRLYFQERLREEFANAKKENYDLSLAIMDIDHFKRFNDTFGHL 440

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GDKV+  ++  +     +   + R GGEEF      +S +EA      LR I+  + I 
Sbjct: 441 FGDKVLKHIAHLMKKSLRSGDIIARYGGEEFVILLPRTSVKEAYDKVERLRNIVAKTTIK 500

Query: 210 ISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRN 253
                   +T+S G++   E  + E  S ++  AD ALY AK+SGRN
Sbjct: 501 -DELVEASVTVSFGVSSYPEFANTE--SELLKTADNALYDAKESGRN 544


>gi|78484545|ref|YP_390470.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78362831|gb|ABB40796.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
          Length = 352

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 81/168 (48%), Gaps = 11/168 (6%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+ + N  AF         S     + L ++  DID+FK+ ND FGH VGD V+ + 
Sbjct: 179 TDELTEVGNRKAFNNAIQDLADSTQDNPQSLVLILTDIDHFKRFNDTFGHLVGDSVLRYF 238

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-- 216
           ++ +         V R GGEEFA     SS ++A   A  +R  +E +++          
Sbjct: 239 ANLMKKTRDDTETVCRYGGEEFAILLSHSSLEKAKERAESIRHSLETAKLKRKDSEKTLG 298

Query: 217 HITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            IT S G+A  +    E I   I RAD ALY AK  GRNR++   ++E
Sbjct: 299 KITASFGVAVYKGEDHETIDDWIKRADDALYEAKNQGRNRIITDEELE 346


>gi|113968657|ref|YP_732450.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113883341|gb|ABI37393.1| diguanylate cyclase [Shewanella sp. MR-4]
          Length = 577

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 12/238 (5%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           H    YF +  S+F+A   F     +FY G   F  L    V  + +++ ++ ++L++ Y
Sbjct: 330 HPIAKYFLLGHSLFVA---FSGLAVMFYKGRAEFNYLSSHGV-GVGIMLEALVLALIIAY 385

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
               +L+E+  S   +   +  D L+ L N   F        +      + ++++  DID
Sbjct: 386 -RIRLLEEIKASQEELKYQAATDSLTQLFNRGHFHKEAQRVYTQASIAQQPMAVIICDID 444

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK++ND +GH +GD+VI  ++  L         V R GGEEF       S  EA + A 
Sbjct: 445 LFKRVNDKYGHLMGDRVIIDIATTLKQHARKCDLVARYGGEEFIMLLHNVSLTEAHLCAE 504

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +R  +        +     +T+S G+A      P+   I  AD ALY AK  GRN V
Sbjct: 505 RIRSAVAALNFTAETQEVFTVTLSLGVATVDFDHPLEHAIKLADDALYCAKHQGRNNV 562


>gi|325928730|ref|ZP_08189900.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
 gi|325540898|gb|EGD12470.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
          Length = 309

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 15/196 (7%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------I 119
           + +S +++++ ++L +GY     +++  +    + +L+ +D L+GL N           I
Sbjct: 118 QGVSTIVVTL-VTLAVGYAFSLRMQDDRV---HLEELASLDALTGLPNRRMLERALTHQI 173

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                ++   S++  D+D+FK++ND +GH  GD  ++ L+  L      P  V R GGEE
Sbjct: 174 DQRQPHDRLNSLIILDLDHFKEVNDLYGHAAGDAALSDLATILRFEVREPHQVFRFGGEE 233

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F       S  E       LRK+I N       GP   IT+S G A    +        R
Sbjct: 234 FVVLLRAGSLAELEAATERLRKVIRNGL----RGPGGRITVSLGAARHDGETHWQDWFSR 289

Query: 240 ADQALYVAKKSGRNRV 255
           AD ALY+AK  GR+ V
Sbjct: 290 ADAALYLAKNGGRDSV 305


>gi|313499416|gb|ADR60782.1| GAF domain/GGDEF domain-containing protein [Pseudomonas putida
           BIRD-1]
          Length = 326

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 89/189 (47%), Gaps = 12/189 (6%)

Query: 79  SLLLGYIS----GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEK-- 128
           +L  GY+       + + L +  +R  + + +D L+ L N  A  +     L    E+  
Sbjct: 133 TLTEGYLQLRSLAQVNRALRVEMDRGQRRALLDPLTQLWNRGALAAFQNRELRLAEERGL 192

Query: 129 -LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            L  V+ D+D FK +ND  GH  GD+V+   + +L         + R GGEEF A     
Sbjct: 193 QLGTVYADLDRFKSVNDEHGHDAGDRVLCECARRLRATLRPDDLLVRQGGEEFVALLRVK 252

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
             QE A +A  LR+ I ++   +  G +  +T+S G A     E I   I RAD  LY A
Sbjct: 253 DSQELAQIAERLRQSIGSAPFLLPGG-TRKMTMSIGCALLTQGEQIDDAIKRADGGLYAA 311

Query: 248 KKSGRNRVV 256
           K  GR++VV
Sbjct: 312 KHGGRDQVV 320


>gi|304408387|ref|ZP_07390034.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9]
 gi|304342676|gb|EFM08523.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9]
          Length = 397

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 82/159 (51%), Gaps = 12/159 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           I Q S  D L+ L N   F S    +  +   ++I+F DID FK++ND  GH   D V+ 
Sbjct: 228 IHQSSITDGLTTLYNRKYFNSRCEKWMRERGSVTIIFCDIDNFKRLNDTQGHHAADGVLK 287

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +++ +    G     GR GGEE  A   G ++ +A  +A  +R+ +E   I        
Sbjct: 288 KVAEIIKEESGAIGAAGRYGGEELLAVIRGDAKVKAEDVAETIRRRVETETI-------- 339

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +TIS G++     + I  +I  AD+A+YV+K +G+N+V
Sbjct: 340 -VTISVGVSTSVSGQSIQEVIKEADEAMYVSKTTGKNKV 377


>gi|260776052|ref|ZP_05884947.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607275|gb|EEX33540.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 323

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 90/183 (49%), Gaps = 21/183 (11%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLS----IVFFDIDYFKQI 142
           +++ +Y  +   S  D L+GLLN       L      S N+       +   D+D FK I
Sbjct: 130 KIYRNYLMVLHESERDKLTGLLNRKTLEERLSHCFNLSVNQDSGLYAWVAIIDLDLFKSI 189

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RK 201
           ND +GH +GD+V+   S QL   F     + R GGEEF    L   E++  +   +L R+
Sbjct: 190 NDTYGHMIGDEVLLMFSQQLQNFFSGSEQLFRFGGEEF-VVLLPPQEKKQVLKELELFRR 248

Query: 202 IIEN---SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            IE+    Q+N       ++T S G+      E + TI+  AD ALY AK+ GRNR+ C+
Sbjct: 249 HIESFRFPQVN-------NMTFSCGVCAISRHEYLPTILGHADVALYSAKEHGRNRIECY 301

Query: 259 SDI 261
            D+
Sbjct: 302 EDL 304


>gi|271502108|ref|YP_003335134.1| diguanylate cyclase [Dickeya dadantii Ech586]
 gi|270345663|gb|ACZ78428.1| diguanylate cyclase [Dickeya dadantii Ech586]
          Length = 381

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 96/191 (50%), Gaps = 12/191 (6%)

Query: 72  VIISITISLLLGYISGSILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLG-----SY 125
           V+  + ISLL+  I GS+L      Y   +   +R D L+G+L   AF          +Y
Sbjct: 171 VVTLVCISLLIA-IMGSLLSLFTKKYLIELPATARYDDLTGVLRRDAFYQLANRALKVAY 229

Query: 126 NEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            E   L  +  DID+FKQ+ND +GH  GDK +  ++D +   F     + RLGG+EFA  
Sbjct: 230 QEDKPLCAMLIDIDHFKQVNDTWGHAAGDKTLKTIADIIRHSFRNRDIICRLGGDEFAVV 289

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQ 242
             G + + A  +A  +R+ I     N +S  P I ++I   +A     E +  II RAD 
Sbjct: 290 LPGITLENAMRVAERVREGIHEFGYNATSVAPGITVSIGL-VAAELPDERLDEIIRRADV 348

Query: 243 ALYVAKKSGRN 253
            LY AK+S RN
Sbjct: 349 NLYQAKRS-RN 358


>gi|224368704|ref|YP_002602865.1| putative signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223691420|gb|ACN14703.1| putative signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 493

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/181 (34%), Positives = 83/181 (45%), Gaps = 26/181 (14%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-----NEK--LSIVFFDIDYFKQINDNFGHPVG 151
           ++  L+ ID L+GL N   +   L         EK  L++V  DID+FK +ND  GH  G
Sbjct: 312 QLEALTLIDYLTGLYNRKYYTERLKETLRICNREKRILAVVMMDIDHFKSVNDKHGHAAG 371

Query: 152 DKVIAFLSDQLVVVFGTPM---FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE---- 204
           D+ +  +   L           F  R GGEEF     G++       AN++RK I+    
Sbjct: 372 DECLRMIGQVLKTALKKTRPGDFAARYGGEEFVLIFSGANADWVEKKANEIRKTIQAQTV 431

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPI---------STIIYRADQALYVAKKSGRNRV 255
           N+  N      I ITIS G A  C K PI           +  RAD  LY AK+ GRNRV
Sbjct: 432 NTMNNREEKIEISITISMGFA--C-KGPIFDDEIMLSPEIMTRRADTMLYKAKQLGRNRV 488

Query: 256 V 256
           V
Sbjct: 489 V 489


>gi|153802398|ref|ZP_01956984.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|124122062|gb|EAY40805.1| GGDEF family protein [Vibrio cholerae MZO-3]
          Length = 353

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 9/173 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGD 152
           N +  L+  D L+G  N  +  +S   +        L ++  D+D+FK IND FGH  GD
Sbjct: 173 NSLLYLASRDPLTGAHNRLSLTTSFQHFERFNDQTSLCLLVIDLDFFKSINDQFGHDTGD 232

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KV+   +     V G      R+GGEEF       S ++A  +   LR I+  SQ   + 
Sbjct: 233 KVLIETTRLFAQVVGDNNLY-RIGGEEFCVTLFDQSLEQAGRVCERLRAIV--SQHLFAF 289

Query: 213 GPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           G   + +TIS G+ E    + ++ ++  AD  LY AKK+GRN+V  F     N
Sbjct: 290 GEKRVQVTISIGVCEYQAGDQLNDLLKFADMELYRAKKAGRNQVRLFRHGSTN 342


>gi|49478505|ref|YP_038104.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330061|gb|AAT60707.1| possible sensory box/GGDEF family protein [Bacillus thuringiensis
           serovar konkukian str. 97-27]
          Length = 431

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ ID L+ + N   F   L +        NE ++++ FDID FK +ND +GH 
Sbjct: 262 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAVNDTYGHD 321

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 322 FGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTLEKEAFQVAESLRFFIETKQF- 380

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             SG S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 381 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCVY 426


>gi|88704424|ref|ZP_01102138.1| membrane protein containing GGDEF domain [Congregibacter litoralis
           KT71]
 gi|88701475|gb|EAQ98580.1| membrane protein containing GGDEF domain [Congregibacter litoralis
           KT71]
          Length = 399

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 14/190 (7%)

Query: 82  LGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSI 131
           LG I+ S+     +L  +  +++ L+ ID L+GL N      +L     +       LS+
Sbjct: 209 LGQITNSLRDRNLQLQEARRQLTDLANIDELTGLGNRRLVNQTLREEVNRARRSHGWLSV 268

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQ 190
           V  D+D+FK+ ND +GHP GD+V+  + D +         V  R GGEEF     G+   
Sbjct: 269 VLIDVDFFKKYNDTYGHPAGDEVLRRIGDIMQRATARAGEVAARYGGEEFILVLPGAKAA 328

Query: 191 EAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPIS--TIIYRADQALYVA 247
           +A   A  L++++    I  S+   S  I+IS G+      E +    ++ RAD ALY A
Sbjct: 329 DALRTAERLKRLVYEENIPHSASEVSDRISISQGVLSIMPDEDVDPGVLVDRADAALYTA 388

Query: 248 KKSGRNRVVC 257
           K+ GR+++  
Sbjct: 389 KREGRDQIAV 398


>gi|330987588|gb|EGH85691.1| response regulator, putative/diguanylate cyclase [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 551

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 85/159 (53%), Gaps = 14/159 (8%)

Query: 107 DCLSGLLNHS---------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           D L+GL NH+         +F S  G   + L     DID+FK++ND+ GHP+GD+VI  
Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRRG--GKPLCFAMLDIDHFKKVNDSHGHPMGDRVIKS 436

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-I 216
           L+  L        F+GR GGEEFA     +  Q A  + +++R     ++I+  + P+ +
Sbjct: 437 LALFLKQRLRKTDFIGRYGGEEFAIVMPDTDIQSAHKVLDEIRHRF--AEIHYPAQPTDL 494

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             T SAG+      +   ++  +AD ALY AK +GRN+V
Sbjct: 495 FCTFSAGVVSLGANDDSLSLASQADTALYCAKHAGRNQV 533


>gi|262164480|ref|ZP_06032218.1| sensory box/GGDEF family protein [Vibrio mimicus VM223]
 gi|262026860|gb|EEY45527.1| sensory box/GGDEF family protein [Vibrio mimicus VM223]
          Length = 308

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 85/171 (49%), Gaps = 13/171 (7%)

Query: 98  NRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
            ++ QL+  D L+ L N         SAF  +  S  + LS +  DID FK IND+FGH 
Sbjct: 138 EQLYQLANTDALTQLCNRRKLWADFRSAFARAKHS-KQPLSCISIDIDNFKLINDHFGHD 196

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+ FL+     +       GR+GGEEF      +    A  LA  +R+    SQ +
Sbjct: 197 KGDEVLCFLAQLFYELTSEHHICGRVGGEEFIIVLEDTPVATAFALAEQIRQRF--SQHS 254

Query: 210 ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                  H+ + AG+A  R      + I  R+DQALY AK+SGRNR   ++
Sbjct: 255 FFEQKE-HVYLCAGVATMRLSDHDFTDIYRRSDQALYQAKRSGRNRCCIYN 304


>gi|262173404|ref|ZP_06041081.1| sensory box/GGDEF family protein [Vibrio mimicus MB-451]
 gi|261890762|gb|EEY36749.1| sensory box/GGDEF family protein [Vibrio mimicus MB-451]
          Length = 308

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 85/171 (49%), Gaps = 13/171 (7%)

Query: 98  NRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
            ++ QL+  D L+ L N         SAF  +  S  + LS +  DID FK IND+FGH 
Sbjct: 138 EQLYQLANTDALTQLCNRRKLWADFRSAFARAKHS-KQPLSCISIDIDNFKLINDHFGHD 196

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+ FL+     +       GR+GGEEF      +    A  LA  +R+    SQ +
Sbjct: 197 KGDEVLCFLAQLFYELTSEHHICGRVGGEEFIIVLEDTPVATAFALAEQIRQRF--SQHS 254

Query: 210 ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                  H+ + AG+A  R      + I  R+DQALY AK+SGRNR   ++
Sbjct: 255 FFEQKE-HVYLCAGVATMRLSDHDFTDIYRRSDQALYQAKRSGRNRCCIYN 304


>gi|196038823|ref|ZP_03106131.1| putative sensory box/GGDEF family protein [Bacillus cereus
           NVH0597-99]
 gi|196045818|ref|ZP_03113047.1| putative sensory box/GGDEF family protein [Bacillus cereus 03BB108]
 gi|196023258|gb|EDX61936.1| putative sensory box/GGDEF family protein [Bacillus cereus 03BB108]
 gi|196030546|gb|EDX69145.1| putative sensory box/GGDEF family protein [Bacillus cereus
           NVH0597-99]
          Length = 430

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ ID L+ + N   F   L +        NE ++++ FDID FK +ND +GH 
Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAVNDTYGHD 320

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 321 FGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 379

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             SG S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 380 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCIY 425


>gi|146284369|ref|YP_001174522.1| GGDEF domain-containing protein [Pseudomonas stutzeri A1501]
 gi|145572574|gb|ABP81680.1| GGDEF domain protein [Pseudomonas stutzeri A1501]
          Length = 621

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 20/162 (12%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N +A+   L         Y   L +   D+D+FK++ND +GH  GD+V+  + 
Sbjct: 464 DPLTGLPNRAAWNERLDLEFARWQRYGGDLLLAVLDVDHFKRVNDGYGHLAGDRVLKIIG 523

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS------G 213
            +L        F+ R GGEEF    L ++  EA       R+++E  + +I S      G
Sbjct: 524 TELQKRLRKTDFIARFGGEEF-VVLLPNTPYEAG------RQLMETLRDSIGSCPFHFKG 576

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             + IT+SAG+      +       RAD+ALY AK SGRNRV
Sbjct: 577 ERVAITLSAGLTAFVTGDTAERAFERADRALYRAKDSGRNRV 618


>gi|83594462|ref|YP_428214.1| diguanylate cyclase with GAF sensor [Rhodospirillum rubrum ATCC
           11170]
 gi|83577376|gb|ABC23927.1| diguanylate cyclase with GAF sensor [Rhodospirillum rubrum ATCC
           11170]
          Length = 493

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 87/168 (51%), Gaps = 13/168 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +++ +  D L+GL N  +F       L +     +++  DID FK IND FGH  GD+V+
Sbjct: 308 LARTAATDPLTGLANRRSFEALATRLLENKPGSGTLLVIDIDLFKHINDCFGHAAGDEVL 367

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L+     V      +GRLGGEEF A  L     EA  +A+ L + +    +   S   
Sbjct: 368 RHLAIVGRSVLRDGDLIGRLGGEEF-AVLLQMDGPEAYAVADRLCQAVREMAVTAPSWEH 426

Query: 216 ----IHITISAGIAERCH-KEP---ISTIIYRADQALYVAKKSGRNRV 255
               + ITIS GIA  C  ++P   +S  + RAD+ALY AKK GRN++
Sbjct: 427 SSVVVKITISIGIAHPCPFEDPKFALSEALRRADRALYGAKKRGRNQI 474


>gi|127512968|ref|YP_001094165.1| diguanylate cyclase [Shewanella loihica PV-4]
 gi|126638263|gb|ABO23906.1| diguanylate cyclase [Shewanella loihica PV-4]
          Length = 347

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 10/157 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N  AF   +  + ++        S++  DID FKQ ND  GH VGDKV+A+++
Sbjct: 187 DQLTSLRNRRAFDEEVLGHIQRFRREQRLSSLLLVDIDNFKQFNDTHGHLVGDKVLAYIA 246

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-- 217
             L        FV R GGEEF      +    A ++A  LR  I    ++I     +   
Sbjct: 247 LALKQGVKGDDFVARYGGEEFVILLPDTEHSGAMVVAEQLRARIAERHLSIGKDKKLSLG 306

Query: 218 -ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            IT+S G+A     +   + + RAD+ALY AK +GRN
Sbjct: 307 AITVSIGVATLRLDDDRESYLVRADEALYRAKSAGRN 343


>gi|303241729|ref|ZP_07328226.1| diguanylate cyclase with GAF sensor [Acetivibrio cellulolyticus
           CD2]
 gi|302590730|gb|EFL60481.1| diguanylate cyclase with GAF sensor [Acetivibrio cellulolyticus
           CD2]
          Length = 565

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 9/165 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHP 149
           Y R+ +L+ +D L+G+ N   F   L    E        LS+  FDID+FK+ ND FGH 
Sbjct: 390 YERMHELATVDSLTGVYNRLYFQERLQQEFENAQKNKYDLSLAIFDIDHFKRFNDTFGHL 449

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GDKV+  +SD L     +   + R GGEEF      +  +EA      LR+ I  + I 
Sbjct: 450 FGDKVLRHISDLLKNSLRSGDIIARYGGEEFVLLFPRTGLKEAYDKVEILREKIAKTTIR 509

Query: 210 ISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRN 253
                +  +T+S G++         S ++  AD ALY AK+SGRN
Sbjct: 510 -DELVTASVTVSFGLSTYPEVSTTESDLLKMADNALYDAKESGRN 553


>gi|294339053|emb|CAZ87402.1| hypothetical protein; putative EAL, GGDEF and membrane domains
           [Thiomonas sp. 3As]
          Length = 801

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 102/201 (50%), Gaps = 13/201 (6%)

Query: 69  LSLVIISITISLLLGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
           L+++    T+ + +   S +++K+   L  ++  + + +  D L+GL N   F+  L   
Sbjct: 167 LTVLAFGATLMMTVEGFSRALIKDNLRLTKAFKALRRFALRDELTGLANRRIFLDHLNEL 226

Query: 126 NEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            ++     L+I   D+D FK +ND  GH +GD+++  +  +L  V      + R GG+EF
Sbjct: 227 MQRHPAQTLTIGLMDLDRFKSVNDRLGHIIGDQLLVAVGQRLRGVLREGDLLARFGGDEF 286

Query: 181 AAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STII 237
                G S+EQ+ + +A  L   IE     I  G S+ I +S G+  +    P+   T++
Sbjct: 287 VVLLPGYSTEQQLSYIAKRLVNCIEAP--FIIQGNSLQIGLSLGLVVQQPDAPVDAETLV 344

Query: 238 YRADQALYVAKKSGRNRVVCF 258
            RAD A+Y AKK+GR +   F
Sbjct: 345 RRADMAMYAAKKNGRQQYRIF 365


>gi|289668230|ref|ZP_06489305.1| putative sensor protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 356

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 13/163 (7%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GL N  AF  +L +  E+       LS+   D+D+FK +ND  GH  GD V+ 
Sbjct: 200 TRTDPLTGLPNRRAFAVALAAATEQTRAVGQPLSVALLDVDHFKTVNDVHGHDQGDAVLR 259

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            LS  L         + R GGEEF      +   +A +    LR+ +    I      ++
Sbjct: 260 ELSALLRAHMAGSGTIARYGGEEFVLLLPNTDLLQARVQCEYLRQSVAAMTI------AL 313

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +T+S G+A    +E +  +I RADQALY AK+ GR++VV   
Sbjct: 314 PVTVSIGVATLYPQESVEAVIKRADQALYAAKRGGRDQVVALE 356


>gi|229186289|ref|ZP_04313455.1| Sensory box/GGDEF family protein [Bacillus cereus BGSC 6E1]
 gi|228597189|gb|EEK54843.1| Sensory box/GGDEF family protein [Bacillus cereus BGSC 6E1]
          Length = 386

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ ID L+ + N   F   L +        NE ++++ FDID FK +ND +GH 
Sbjct: 217 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAVNDTYGHD 276

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 277 FGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 335

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             SG S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 336 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCIY 381


>gi|83312193|ref|YP_422457.1| hypothetical protein amb3094 [Magnetospirillum magneticum AMB-1]
 gi|82947034|dbj|BAE51898.1| Hypothetical protein ydeH [Magnetospirillum magneticum AMB-1]
          Length = 301

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 7/164 (4%)

Query: 103 LSRIDCLSGLLNHSAFISSL-GSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVI 155
           L+ +D L+GL N    +S L G  +  +       +   DID FK++ND FGH  GD+V+
Sbjct: 138 LATVDALTGLGNRQTMMSHLIGERDRAMRQKQPCCVALVDIDLFKKVNDTFGHTEGDRVL 197

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +++ L         + R GGEEF      ++ +    +   +R  I    I  ++G  
Sbjct: 198 RAVAESLRRNVRPYDVLYRYGGEEFLICLPAATPEAGRQVLERMRSAIAALGITSATGKP 257

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I IT + G+AE      +   + RAD ALY  K++GRNRV  +S
Sbjct: 258 IPITATFGLAELSADLSVEESLDRADTALYDGKRAGRNRVAVWS 301


>gi|89099761|ref|ZP_01172634.1| hypothetical protein B14911_21668 [Bacillus sp. NRRL B-14911]
 gi|89085508|gb|EAR64636.1| hypothetical protein B14911_21668 [Bacillus sp. NRRL B-14911]
          Length = 677

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 93/174 (53%), Gaps = 8/174 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           +EL  S   ++ L+  D L+GL N    + S+  +   + + ++VF D+D+FK +ND  G
Sbjct: 235 QELVESNKHLNHLAYHDTLTGLPNRRKVMQSIEEWMAEDIQFAVVFIDLDHFKHVNDLLG 294

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF-AAAALGSSEQEAAILANDLRKIIENS 206
           H +GD ++  ++ +L    G+   VGRLGG+EF     +  + Q     A+ + K++E  
Sbjct: 295 HNIGDDLLKKIASRLKENSGSEDIVGRLGGDEFIILKPVKENLQLDDFSADLIEKVVEPV 354

Query: 207 QINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           QI       I IT S GIA    H + ++ I+ +AD A+Y +K  GRN    F+
Sbjct: 355 QI---LEHEIVITTSIGIALYPTHGKDVNDIMKKADIAMYNSKDKGRNTYFIFT 405


>gi|95930131|ref|ZP_01312870.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95133825|gb|EAT15485.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 521

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 102/199 (51%), Gaps = 19/199 (9%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128
           S V++++ I +LL        ++L+++  ++ ++S  D L+GL N   F++    Y EK 
Sbjct: 322 SFVLVAMAIIVLLTCYLFVSRRKLYLAQQKLMRISERDPLTGLYNRRKFMN----YYEKE 377

Query: 129 ----------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGG 177
                     L+++  DID+FK  ND++GH  GD  +  ++  +      P     R GG
Sbjct: 378 WKAAQRSKTPLAVLMIDIDHFKDYNDHYGHLAGDVALTAVAGAIETRITRPRDCTARYGG 437

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEPIST- 235
           EEF      + +  AA +A  +R  +E  Q+  + S  + HIT+S GI      + I+  
Sbjct: 438 EEFIGLLPETDDLAAAQVAEKIRIQVEKLQVQHAYSATADHITVSIGITSLQEGDKINRM 497

Query: 236 -IIYRADQALYVAKKSGRN 253
            +I  AD+ALY AK++GRN
Sbjct: 498 ELINLADKALYEAKEAGRN 516


>gi|116493518|ref|YP_805253.1| Signal transduction diguanylate cyclase [Pediococcus pentosaceus
           ATCC 25745]
 gi|116103668|gb|ABJ68811.1| Signal transduction diguanylate cyclase [Pediococcus pentosaceus
           ATCC 25745]
          Length = 400

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 108/224 (48%), Gaps = 18/224 (8%)

Query: 50  LFYIGLTPFYGLEYILVENLSLV-IISITISLLLG----YISGSILKELFISYNRISQLS 104
           L   GL  ++ L+ I   +L++V II +T+  L+     +     ++ +   Y  + Q  
Sbjct: 171 LIMFGLAWWFVLKDI--HHLTIVDIICLTLEFLIAMSIVHFGNKKVRMIMKQYLNLMQEV 228

Query: 105 RIDCLSGLLNHSAF------ISSLGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
             D L+G+ N ++F      +    S N+  L++V FDID+FKQ ND +GH VGDKV+  
Sbjct: 229 DTDALTGVYNRNSFNKVVKGVFEFYSNNDAPLTMVMFDIDHFKQFNDQYGHQVGDKVLRL 288

Query: 158 LSDQLVVVFGTPMFVG---RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           ++D+           G   R+GGEEFA    G +  +   +   +R  +    I +++  
Sbjct: 289 VADRFSYELVDRKAHGQLFRVGGEEFAIIFRGRTADDCEKIVRAIRDDLVKETIRVNNHD 348

Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I I +S GI++ R       T   R D  LY +K++ RN +  
Sbjct: 349 RIGIKVSIGISQLRDDDFDFQTFYKRVDDYLYQSKRNKRNSITV 392


>gi|307553968|gb|ADN46743.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli ABU
           83972]
 gi|323956351|gb|EGB52094.1| diguanylate cyclase domain-containing protein [Escherichia coli
           H263]
          Length = 564

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 9/185 (4%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           LL  Y+   ++  +++  + +   +  D L+ L N  A             ++    S++
Sbjct: 374 LLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAKLCHTHQHPFSVI 433

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G++  +A
Sbjct: 434 QVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEEFCVILPGANLTQA 493

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKS 250
           A +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+AK++
Sbjct: 494 AEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQA 553

Query: 251 GRNRV 255
           GRNRV
Sbjct: 554 GRNRV 558


>gi|296282481|ref|ZP_06860479.1| diguanylate cyclase [Citromicrobium bathyomarinum JL354]
          Length = 400

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 114/253 (45%), Gaps = 25/253 (9%)

Query: 23  SPHTFMIYFSIFFSIFIATVIF-IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL 81
           SP   M+Y  + F   + TV F I  IF  Y+G     G EY    N    +IS T S +
Sbjct: 146 SPINTMLY--VLF--LVLTVHFPIKAIFASYLGSGRTEG-EY---ANTLYAVISQTTSGV 197

Query: 82  LGYISGSIL----KELFISYNRISQLSRIDCLSGLLNHSAFIS-----SLGSYNEKLSIV 132
           L   +G ++     +  +   +   LS  D L+GL N  A        +    +E   + 
Sbjct: 198 LMVAAGLLIIINFLQSVVQNTQAQALS--DPLTGLPNRRAMDRWFDELAAAEADEPAVVA 255

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK  ND FGH VGDKV+  ++  L     +   + RLGGEEF    L   E EA
Sbjct: 256 VIDIDHFKTFNDRFGHDVGDKVLRAVATCLDRHRPSAARLARLGGEEFVLLLL-KDEAEA 314

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            +    +R  I      ++   +  +T+S G+A     E +   + RADQALY AK  GR
Sbjct: 315 LLTCESMRLAIS----RLTFAETDPVTVSIGLASALPGEAMGGPLRRADQALYRAKGLGR 370

Query: 253 NRVVCFSDIENNT 265
           NR      ++  T
Sbjct: 371 NRCEVAPPVDGQT 383


>gi|296135291|ref|YP_003642533.1| diguanylate cyclase with PAS/PAC sensor [Thiomonas intermedia K12]
 gi|295795413|gb|ADG30203.1| diguanylate cyclase with PAS/PAC sensor [Thiomonas intermedia K12]
          Length = 451

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 88/166 (53%), Gaps = 9/166 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQINDNFGHP 149
           ++ R+   +  D L+G+L   A +  L +       ++ L++ F D+D FKQIND  GH 
Sbjct: 270 THARLLHRAERDALTGVLTRRAIMERLDTALARRTRDDMLALCFIDLDGFKQINDRLGHV 329

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+++  ++  +  V      +GR+GG+EF A +  +    A  LA  L ++   +  +
Sbjct: 330 RGDRLLVQVAHAMQDVLRRDDAIGRIGGDEFVALSAVADLSAAQSLAAKLVEVCAAAGYD 389

Query: 210 ISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + SG  + +T S G+ A   H      ++ RAD A+YVAK+ G+NR
Sbjct: 390 LLSG--MRVTASIGVAAAPTHARSSFELLQRADDAMYVAKQQGKNR 433


>gi|241113169|ref|YP_002973004.1| diguanylate cyclase with PAS/PAC sensor [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240861377|gb|ACS59043.1| diguanylate cyclase with PAS/PAC sensor [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 628

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 19/187 (10%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L +S  ++  L+  D L+G++N  AF        +     N   S++  DID FK  ND 
Sbjct: 440 LRLSAEQLKSLAETDGLTGMVNRRAFDEAFARETAGSARKNTPFSLLMVDIDRFKAYNDT 499

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GHP GD+ +  +S  L      P   V R GGEEF      +S + A I+A    +++ 
Sbjct: 500 YGHPAGDQCLRVVSRCLRQSVSRPADIVARYGGEEFVVLLPATSAKGAMIVAEQFARLLS 559

Query: 205 NSQINISSG-------PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              I + +G        SI I+ + G   R +    + ++  AD ALY AK  GRNR++ 
Sbjct: 560 QENI-VHTGSEFGRVTASIGISCATGATLRINP---NRLLSEADAALYDAKTQGRNRILA 615

Query: 258 FSDIENN 264
            S  E +
Sbjct: 616 HSPEERH 622


>gi|121596403|ref|YP_988299.1| diguanylate cyclase [Acidovorax sp. JS42]
 gi|120608483|gb|ABM44223.1| diguanylate cyclase [Acidovorax sp. JS42]
          Length = 395

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 78/158 (49%), Gaps = 10/158 (6%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL+N  + I +L           E  +++  DID+FK +ND+ GH  GD V+  ++
Sbjct: 222 DALTGLVNRRSLIMALERDVARAVRLREPYAVMLVDIDHFKFVNDSHGHLAGDSVLRHVA 281

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           D L         VGR GGEEF      +    A  LA  LR+ +E     +  G  I +T
Sbjct: 282 DLLRTRLRAQDLVGRYGGEEFMVLLPHTPLGGALELAETLRRAVERLPC-VGGGKEIPVT 340

Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S G+        +    ++  AD+ALY AK +GRNRV
Sbjct: 341 VSIGVCGGPLQPADGWDRLVQGADEALYAAKLAGRNRV 378


>gi|26248226|ref|NP_754266.1| hypothetical protein c2374 [Escherichia coli CFT073]
 gi|237705915|ref|ZP_04536396.1| cellulose synthesis regulatory protein [Escherichia sp. 3_2_53FAA]
 gi|81476029|sp|Q8FGJ7|YEDQ_ECOL6 RecName: Full=Cellulose synthesis regulatory protein
 gi|26108630|gb|AAN80833.1|AE016762_86 Hypothetical protein yedQ [Escherichia coli CFT073]
 gi|226900672|gb|EEH86931.1| cellulose synthesis regulatory protein [Escherichia sp. 3_2_53FAA]
          Length = 569

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 9/185 (4%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           LL  Y+   ++  +++  + +   +  D L+ L N  A             ++    S++
Sbjct: 379 LLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAKLCHTHQHPFSVI 438

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G++  +A
Sbjct: 439 QVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEEFCVILPGANLTQA 498

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKS 250
           A +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+AK++
Sbjct: 499 AEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQA 558

Query: 251 GRNRV 255
           GRNRV
Sbjct: 559 GRNRV 563


>gi|219668908|ref|YP_002459343.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2]
 gi|219539168|gb|ACL20907.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2]
          Length = 534

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 85/168 (50%), Gaps = 11/168 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVG 151
           SYNR     R+     L+N    + + G  +EK      ++ FDIDYFK  NDN GH  G
Sbjct: 368 SYNRYFFDERLQQEIDLVNR---LQAYGLESEKSVNNFGLIMFDIDYFKNYNDNNGHLAG 424

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  +   +  V      + R GGEEFA     +SE+   I A  +RK +E+      
Sbjct: 425 DELLQTIVTVVKGVLYPTDILCRYGGEEFAVICCHTSEKGFEIAAEKIRKAVEDYDFRFQ 484

Query: 212 SG-PSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256
              P  ++T+S G A  C    ++   +I RAD  LY+AK +GRN+VV
Sbjct: 485 DKQPGGNLTVSIG-AAYCSTPNVNKKDLITRADNYLYLAKSTGRNKVV 531


>gi|327484213|gb|AEA78620.1| GGDEF domain protein [Vibrio cholerae LMA3894-4]
          Length = 323

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 115/265 (43%), Gaps = 31/265 (11%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           IW C       F P  F I+ S  F+   + +  I    + Y          + L +  +
Sbjct: 68  IWSC-------FVPILFYIFTSARFAFVTSCLFLIIQSNIIY----------WQLQQTGA 110

Query: 71  LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSY 125
            +  S+ + L   YI   ++  ++    R     +  L+  D L+G  N  +  +S   +
Sbjct: 111 AISWSVLLHLCFAYIGIWVVAHVYEDNRRKIENSLLYLASRDPLTGAHNRLSLTTSFQHF 170

Query: 126 NE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   L ++  D+D+FK IND FGH  GDKV+   +     V G      R+GGEEF
Sbjct: 171 ERFNDQTSLCLLVIDLDFFKSINDQFGHDTGDKVLIETTRLFAQVVGDNNLY-RIGGEEF 229

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYR 239
                  S ++A  +   LR I+  SQ   + G   + +TIS G+ E    + ++ ++  
Sbjct: 230 CVTLFDQSLEQAGRVCERLRAIV--SQHLFAFGEKRVQVTISIGVCEYQAGDQLNDLLKF 287

Query: 240 ADQALYVAKKSGRNRVVCFSDIENN 264
           AD  LY AKK+GRN+V  F     N
Sbjct: 288 ADMELYRAKKAGRNQVRLFRHGSTN 312


>gi|152985511|ref|YP_001351597.1| GGDEF domain-containing protein [Pseudomonas aeruginosa PA7]
 gi|150960669|gb|ABR82694.1| ggdef domain protein [Pseudomonas aeruginosa PA7]
          Length = 668

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 79/165 (47%), Gaps = 16/165 (9%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q +  D L+GL N +A    L            +L +   DID+FK+IND+FGH  GDKV
Sbjct: 506 QKALTDPLTGLPNRAALSERLEQEVARRRRDGGELLLAVLDIDHFKRINDDFGHLAGDKV 565

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQINI 210
           +  ++ +L        F+ R GGEEF     A  L +  Q    L   LR  I     + 
Sbjct: 566 LKIIAGELRKRLRQADFIARFGGEEFVVLLPATPLDAGRQ----LLERLRAAIAACPFHF 621

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              P + IT SAGI      E       RADQALY AK++GR+R+
Sbjct: 622 KGEP-LSITCSAGITAFVGNEAGEAAFERADQALYRAKRAGRDRL 665


>gi|225866030|ref|YP_002751408.1| putative sensory box/GGDEF family protein [Bacillus cereus 03BB102]
 gi|225790346|gb|ACO30563.1| putative sensory box/GGDEF family protein [Bacillus cereus 03BB102]
          Length = 430

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ ID L+ + N   F   L +        NE ++++ FDID FK +ND +GH 
Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAVNDTYGHD 320

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE  Q  
Sbjct: 321 FGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 379

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             SG S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 380 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCIY 425


>gi|167624977|ref|YP_001675271.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167354999|gb|ABZ77612.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 518

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 93/205 (45%), Gaps = 18/205 (8%)

Query: 65  LVENLSLVIISITISLL------LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           L+EN     +  ++  L      LG  + S  + LF       +L+ +D L+ L N SA 
Sbjct: 316 LLENREQAQLKQSVETLRQELKELGKETESYKERLFEQ----QKLNLLDSLTQLPNRSAL 371

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              +           + L +   DID+FK IND+FGH  GDK +  ++  L        F
Sbjct: 372 EERMDIEYRNYKRTKQPLWVAVADIDHFKTINDSFGHSTGDKTLQVIAMALKSALRESEF 431

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
           V R GGEEF       +E +   L N +R+ +++          I +T+S G A+    E
Sbjct: 432 VARYGGEEFVLLLPDVAESDIQPLLNRVREKVKSIPFKF-KNQRITVTVSIGAAQIIENE 490

Query: 232 PISTIIYRADQALYVAKKSGRNRVV 256
            I+    RAD ALY AK   R+RV+
Sbjct: 491 LITETFDRADAALYKAKNESRDRVI 515


>gi|254225298|ref|ZP_04918910.1| GGDEF family protein [Vibrio cholerae V51]
 gi|125622139|gb|EAZ50461.1| GGDEF family protein [Vibrio cholerae V51]
          Length = 353

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 7/172 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGD 152
           N +  L+  D L+G  N  +  +S   +        L ++  D+D+FK IND FGH  GD
Sbjct: 173 NSLLYLASRDPLTGAHNRLSLTTSFQHFERFNDQTSLCLLVIDLDFFKSINDQFGHDTGD 232

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KV+   +     V G      R+GGEEF       S ++A  +   LR I+         
Sbjct: 233 KVLIETTRLFAQVVGDNNLY-RIGGEEFCVTLFDQSLEQAGRVCERLRAIVSKHLFAFGE 291

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
              + +TIS G+ E    + ++ ++  AD  LY AKK+GRN+V  F     N
Sbjct: 292 -KRVQVTISIGVCEYQAGDQLNDLLKFADMELYRAKKAGRNQVRLFRHGSTN 342


>gi|148261059|ref|YP_001235186.1| diguanylate cyclase/phosphodiesterase [Acidiphilium cryptum JF-5]
 gi|146402740|gb|ABQ31267.1| diguanylate cyclase/phosphodiesterase [Acidiphilium cryptum JF-5]
          Length = 705

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 12/171 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGD 152
           +S+L+  D L+GL N   F + L    E       +++++F D+D FKQIND  GH +GD
Sbjct: 262 LSRLASTDPLTGLYNRPTFTARLAGRAEGSVGAPGRVALLFIDLDSFKQINDLRGHEMGD 321

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+   ++++  V G    V R GG+EF  A      +EA   A    ++IE  +  I+ 
Sbjct: 322 QVLRQTAERVARVIGATGDVARWGGDEFLVALPDCGGEEALRHAE---RLIEAIKTPITV 378

Query: 213 GPSI-HITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           G  +  +  S G+A    + +   ++I  AD A+Y AK+ G++R   F  +
Sbjct: 379 GADVCRVEASVGVALYPDNGDTADSVIRAADVAMYAAKREGKSRAKRFDPV 429


>gi|119774804|ref|YP_927544.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B]
 gi|119767304|gb|ABL99874.1| GGDEF domain-like protein [Shewanella amazonensis SB2B]
          Length = 356

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 8/172 (4%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
            ++ + Q+++ D L+GL N S     +++L    + + ++  D+D+FK+IND  GH +GD
Sbjct: 156 QHDSLVQIAQRDPLTGLFNRSKLELDLAALAPATQAI-LMLLDVDHFKRINDVHGHQMGD 214

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA---AALGSSEQEAAI-LANDLRKIIENSQI 208
           KV+  L   L  +        R GGEEF         S+  E A+ LA       + +  
Sbjct: 215 KVLTSLGKLLDALLPDVATAYRFGGEEFLVLFNLTEPSAFNETALNLAKTTAGRFQAALR 274

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +   P   IT S GIA+R   E I     RAD ALY AK+SGR++V  F +
Sbjct: 275 CVDVVPGSTITCSIGIAQRIAGEHIPPWFDRADAALYRAKRSGRDQVCVFEE 326


>gi|307130173|ref|YP_003882189.1| hypothetical protein Dda3937_03276 [Dickeya dadantii 3937]
 gi|306527702|gb|ADM97632.1| hypothetical protein Dda3937_03276 [Dickeya dadantii 3937]
          Length = 365

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 68/134 (50%), Gaps = 3/134 (2%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           + +  ++   DID+FK+IND+FGH VGD VI  LS  +          GR GG+EF    
Sbjct: 233 HQQVATLALLDIDHFKRINDSFGHHVGDDVILLLSGGIKSTLRQSDITGRFGGDEFGMVL 292

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQA 243
             +   EA  +   LR+ +E+  I +   P++ + IS G+ +     E     +  AD A
Sbjct: 293 PQTPAVEAERIVQRLREYLES--IQLHQAPALRVGISVGLVQFHAGMEDYQVWLKAADTA 350

Query: 244 LYVAKKSGRNRVVC 257
           LY AK +GR   VC
Sbjct: 351 LYQAKDNGRGCTVC 364


>gi|283835033|ref|ZP_06354774.1| HmsT protein [Citrobacter youngae ATCC 29220]
 gi|291069322|gb|EFE07431.1| HmsT protein [Citrobacter youngae ATCC 29220]
          Length = 358

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 111/247 (44%), Gaps = 20/247 (8%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYG-------------LEYILVENLSLVIISITISLLLG 83
           +FI ++ F  NI  F +   P  G             + Y +   ++ + I   I     
Sbjct: 109 LFIGSIAFANNIIAFTLHSLPSVGVCLWLNGSEHSLRIFYFMALPMAGIAIQHVIQKRYD 168

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYF 139
             +  ++ +L      ++ LS +D L+GL N       L +     N K  ++  DID+F
Sbjct: 169 GFAQQLMYKLLEERETLNGLSMLDPLTGLYNRRGLQHRLDTLLALSNSKHYVLLLDIDHF 228

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND++GH +GD+ +  +S  +     +   V R GGEEF         Q+A   A  +
Sbjct: 229 KAYNDHYGHMMGDQALIRVSAAIRDSVRSRDVVARFGGEEFMVLLTAIDPQQAQAAAERI 288

Query: 200 RKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R+ + + +I      S+  ++T+S GIA    ++ I   I RAD+ALY AK  GRN  + 
Sbjct: 289 RQKVYDLKIPHMFNESVATNVTVSIGIAPLVEQD-IEAAIARADKALYEAKNLGRNNTLV 347

Query: 258 FSDIENN 264
             ++  N
Sbjct: 348 SEELWVN 354


>gi|229523693|ref|ZP_04413098.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|229337274|gb|EEO02291.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
          Length = 353

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 9/173 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGD 152
           N +  L+  D L+G  N  +  +S   +        L ++  D+D+FK IND FGH  GD
Sbjct: 173 NSLLYLASRDPLTGAHNRLSLTTSFQHFERFNDQTSLCLLVIDLDFFKSINDQFGHDTGD 232

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KV+   +     V G      R+GGEEF       S ++A  +   LR I+  SQ   + 
Sbjct: 233 KVLIETTRLFAQVVGDNNLY-RIGGEEFCVTLFDQSLEQAGRVCERLRAIV--SQHLFAF 289

Query: 213 GPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           G   + +TIS G+ E    + ++ ++  AD  LY AKK+GRN+V  F     N
Sbjct: 290 GEKRVQVTISIGVCEYQAGDQLNDLLKFADMELYRAKKAGRNQVRLFRHGSTN 342


>gi|254457249|ref|ZP_05070677.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207086041|gb|EDZ63325.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 495

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 89/170 (52%), Gaps = 18/170 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           ++I  ++ ID L+  +N  A+       +S    YN   SI   DID FK+IND +GH V
Sbjct: 332 HQIEDMTYIDSLTNSMNRRAYNIKIEELLSLYSRYNTVFSIAMLDIDDFKKINDEYGHRV 391

Query: 151 GDKVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GD V+      +V++  + +    F+ R+GGEEF      +S  EA I++  +R+ +E  
Sbjct: 392 GDNVLI----NIVLLIKSEIRQNDFLYRIGGEEFVILFAQTSIHEAIIVSEKIRQSVEAE 447

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              I S     IT+S G++E    +  + I  R D+ LY +K +G+N++ 
Sbjct: 448 LKTIKSKT---ITVSIGVSEVMQNDTENEIFTRVDRLLYKSKTNGKNQLT 494


>gi|294141081|ref|YP_003557059.1| GGDEF domain-containing protein [Shewanella violacea DSS12]
 gi|293327550|dbj|BAJ02281.1| GGDEF domain protein [Shewanella violacea DSS12]
          Length = 376

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 11/161 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N  +F   +  + +K +       ++  DID+FK+ ND  GH VGDKV+A+++
Sbjct: 215 DQLTSLNNRRSFEDEVMKHMQKYTQSQSPSCMLLIDIDHFKRFNDAHGHLVGDKVLAYVA 274

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--- 216
             L  V     FV R GGEEF      +   +A ++A  LR  I   ++ +     +   
Sbjct: 275 LALKQVVKGTDFVARYGGEEFVILLPNTQLTDALVVAEQLRTAISERKLTLGKDKKLSLG 334

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            IT+S G++     +   +   RAD+ALY AK SGRN  VC
Sbjct: 335 SITVSLGVSTLNIGDNRESYFVRADEALYRAKSSGRN-CVC 374


>gi|226357685|ref|YP_002787424.1| diguanylate cyclase [Deinococcus deserti VCD115]
 gi|226319927|gb|ACO47920.1| putative diguanylate cyclase [Deinococcus deserti VCD115]
          Length = 633

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 10/166 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q S  D L+GL N      S           ++ ++++  DID+FK  ND+ GH  GD
Sbjct: 462 LRQQSIRDPLTGLYNRRYLEESFERELHRAQRSDDPIAVIMLDIDHFKHFNDSHGHEAGD 521

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +++  L   L           R GGEEFA    G +  +A   A+ LR  +E++Q   S 
Sbjct: 522 ELLRALGQLLSGCIRAEDVACRYGGEEFAMVFPGMTLDQATRWADQLRHTVESTQF-ASR 580

Query: 213 GPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G ++  +++S G+A    H   ++ +I  AD ALY AK+ GRNRV+
Sbjct: 581 GEALEQVSVSLGVAAFPQHGRHLADLIRAADAALYRAKREGRNRVI 626


>gi|254508626|ref|ZP_05120742.1| sensory box/ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219548477|gb|EED25486.1| sensory box/ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 626

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 82/175 (46%), Gaps = 20/175 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHP 149
            R+  LS  D L+ L N   F S L  Y         +   +   DID+FK++ND  GH 
Sbjct: 460 ERLRILSEKDELTQLWNRRKFESELSKYAKLVDRYPRQTTCLALLDIDHFKRVNDQQGHD 519

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+VI  +   L        FV R+GGEEFA     +S  EA +  N LR       + 
Sbjct: 520 EGDRVIKRVGVILQDTLRDTDFVARIGGEEFAVILPHTSLAEAEMALNRLR-------VA 572

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VCFSDIE 262
           +   P + +TISAG+ +       S   Y+ AD ALY +K  GRN V VC S  E
Sbjct: 573 VEIAPDLSVTISAGVTDLLADRTRS---YKCADIALYESKTLGRNLVSVCSSSEE 624


>gi|209964834|ref|YP_002297749.1| response regulator With diguanylate cyclase (GGDEF) domain,
           putative [Rhodospirillum centenum SW]
 gi|209958300|gb|ACI98936.1| response regulator With diguanylate cyclase (GGDEF) domain,
           putative [Rhodospirillum centenum SW]
          Length = 482

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 16/182 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH---SAFISSL---GSYNEK-LSIVFFDIDYFKQIND 144
            L  +Y +   L+  D L+GL N    SA +  L   G  N+K ++ + FDID+FK +ND
Sbjct: 281 RLRSNYEQSLSLALTDSLTGLFNRRYLSAHLPRLLDRGGGNQKPVAALLFDIDHFKIVND 340

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+  ++ +          V RLGGEEF      +    A  +A  LR+ I 
Sbjct: 341 TWGHSAGDEVLREVAVRTSRNLRNFDLVTRLGGEEFVVVMPDTDLSSAMTVAERLRRRIA 400

Query: 205 NS--QINISSGP-SIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   ++  ++G   I +TIS G+A           E   +++ RAD ALY  K+SGRNRV
Sbjct: 401 DEPFKVTATAGTGEITVTISIGVAVADGTDGDGRGESGDSLLRRADTALYRVKRSGRNRV 460

Query: 256 VC 257
           V 
Sbjct: 461 VA 462


>gi|95928352|ref|ZP_01311100.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95135623|gb|EAT17274.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 311

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 85/178 (47%), Gaps = 13/178 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEK---LSIVFFDIDYFKQI 142
           +K L      +SQ    D L+GL N  AF  +    L  +  +     +V  DIDYFK++
Sbjct: 118 IKRLSQDKQSMSQTMMEDSLTGLCNRKAFDRAIQVELARFKRQSIPFGLVILDIDYFKRV 177

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND++GH VGD V+  +S+++           R GGEEFA    G +  EA   A  +R +
Sbjct: 178 NDSYGHQVGDHVLKAVSNRIAGSLRELDIPCRYGGEEFAVILPGLTATEAYAAAERVRNL 237

Query: 203 IENSQINISSGPSIHITISAG-----IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           IE    N   GP   +T+S G     I E         +I  AD ALY AK  GRNRV
Sbjct: 238 IETIPANELQGPP-QVTVSLGVCSTHIVEDRQNVTAEQLIEWADLALYEAKHQGRNRV 294


>gi|332296033|ref|YP_004437956.1| diguanylate cyclase with PAS/PAC sensor [Thermodesulfobium
           narugense DSM 14796]
 gi|332179136|gb|AEE14825.1| diguanylate cyclase with PAS/PAC sensor [Thermodesulfobium
           narugense DSM 14796]
          Length = 560

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 84/173 (48%), Gaps = 18/173 (10%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFK 140
           +I KEL++       LS  D L+G  N   F+  L    E       K S++  DID FK
Sbjct: 391 NIEKELYL-------LSITDPLTGAYNRRYFLERLDEEIERSRRTGSKFSVIMLDIDNFK 443

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND FGH  GD V+  LS+ +           R GGEEF      ++ + A ILA +LR
Sbjct: 444 GINDKFGHNAGDLVLKSLSETIKDRIRKIDIFARWGGEEFVILLPETTPERALILAEELR 503

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             + N +I    G     T+S GIA    ++ I ++I RAD  +Y AK  G+N
Sbjct: 504 IRLNNLKIEGIKG----FTVSLGIAGFRKEDDIDSLIERADNLMYEAKAVGKN 552


>gi|326404458|ref|YP_004284540.1| hypothetical protein ACMV_23110 [Acidiphilium multivorum AIU301]
 gi|325051320|dbj|BAJ81658.1| hypothetical protein ACMV_23110 [Acidiphilium multivorum AIU301]
          Length = 719

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 12/171 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGD 152
           +S+L+  D L+GL N   F + L    E       +++++F D+D FKQIND  GH +GD
Sbjct: 276 LSRLASTDPLTGLYNRPTFTARLAGRAEGSVGAPGRVALLFIDLDSFKQINDLRGHEMGD 335

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+   ++++  V G    V R GG+EF  A      +EA   A    ++IE  +  I+ 
Sbjct: 336 QVLRQTAERVARVIGATGDVARWGGDEFLVALPDCGGEEALRHAE---RLIEAIKTPITV 392

Query: 213 GPSI-HITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           G  +  +  S G+A    + +   ++I  AD A+Y AK+ G++R   F  +
Sbjct: 393 GADVCRVEASVGVALYPDNGDTADSVIRAADVAMYAAKREGKSRAKRFDPV 443


>gi|304404109|ref|ZP_07385771.1| diguanylate cyclase with GAF sensor [Paenibacillus curdlanolyticus
           YK9]
 gi|304347087|gb|EFM12919.1| diguanylate cyclase with GAF sensor [Paenibacillus curdlanolyticus
           YK9]
          Length = 639

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 10/129 (7%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  DID FK IND +GH VGD+++  +S+ +           R GGEE A        
Sbjct: 515 SLIVVDIDKFKSINDTYGHQVGDQILMQVSETIKASIRETDIAARWGGEELAIYLPEIRR 574

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQALYV 246
           ++A  +A  +RK +E     + + PS  +T+S G++E      K  + ++ YRAD ALY 
Sbjct: 575 EQAYRIAERIRKKVE-----LETHPS--VTVSCGLSEWTFEDEKVSVESLFYRADMALYQ 627

Query: 247 AKKSGRNRV 255
           AK SGRNR+
Sbjct: 628 AKNSGRNRI 636


>gi|284042675|ref|YP_003393015.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
 gi|283946896|gb|ADB49640.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
          Length = 587

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 83/157 (52%), Gaps = 16/157 (10%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN   F       ++ +  Y  + +++  D+D FKQ+ND +GH  GD+VIA ++
Sbjct: 161 DPLTGLLNRRRFEQELERHVAHVRRYGPEGAVLVVDVDRFKQVNDAYGHTAGDRVIASVA 220

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQINISSGPSIH 217
             L     +   V R+GG+EFA     +   EA I+A   R+++E   +Q +   G   H
Sbjct: 221 RVLHRRLRSTDTVARIGGDEFAVLLPKADRAEAEIVA---RRLVEAVRAQADPGDGERTH 277

Query: 218 ITISAG---IAERCHKEPISTIIYRADQALYVAKKSG 251
           +TIS G   + ER      + ++  AD A+Y AK SG
Sbjct: 278 VTISVGATVLDERSELSAEAAVVD-ADLAMYDAKDSG 313


>gi|167908432|ref|ZP_02495637.1| diguanylate cyclase [Burkholderia pseudomallei NCTC 13177]
          Length = 281

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 9/175 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           LKEL  +  ++  L+  D L+G  N   FI  + S            S++  D+D FK I
Sbjct: 106 LKELQHTNQKLEYLASTDPLTGASNRRKFIEQMQSEIARAKCDGTAFSLLALDLDNFKTI 165

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           NDN+GH +GD V+     + V        + R+GGEEF           A+ +A  +R  
Sbjct: 166 NDNYGHQIGDVVLRNFVRRCVAAIRPCDHIARVGGEEFMVLLPRMFADAASEIAERVRAA 225

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           I N+   I  G  I +T+S G+++     + +  II  AD+ LY AK  G NRVV
Sbjct: 226 IANASFGI-GGKRIGVTVSIGVSQYGRDGDTLDDIINAADKLLYRAKNEGSNRVV 279


>gi|149375454|ref|ZP_01893224.1| hypothetical protein MDG893_16397 [Marinobacter algicola DG893]
 gi|149360159|gb|EDM48613.1| hypothetical protein MDG893_16397 [Marinobacter algicola DG893]
          Length = 757

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 5/146 (3%)

Query: 112 LLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           LL H + ++  G  ++ LS++  DID+FK+ ND  GH  GD  +  ++  L   F     
Sbjct: 612 LLEHESAVALRG--DQPLSLLIVDIDHFKRFNDTHGHEAGDSALKAVAGMLARHFRDSDV 669

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCH 229
           V R GGEEF     GSS + A   A +L + +    +        H+TIS G++    C 
Sbjct: 670 VCRFGGEEFVIIMAGSSAKAAYDKARELARAVRTMTVEHGGFELGHVTISVGVSSWPECS 729

Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255
             P  +++  AD+ALY AK+ GR+RV
Sbjct: 730 DSP-DSLLGLADRALYRAKEGGRDRV 754


>gi|148975747|ref|ZP_01812578.1| GGDEF family protein [Vibrionales bacterium SWAT-3]
 gi|145964820|gb|EDK30072.1| GGDEF family protein [Vibrionales bacterium SWAT-3]
          Length = 338

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 83/155 (53%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D  + L N  +F   + +L   N+ L ++  DID+FK  ND +GH  GD V+  ++ +L 
Sbjct: 182 DSTTTLYNRRSFDRDLETLCEANQSLCLILLDIDHFKNFNDTYGHLFGDMVLKGIARKLK 241

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221
           +     +   R GGEEFA      S + A  LA+  R+ +E   I +  SG  + +IT S
Sbjct: 242 LSCREGISAYRFGGEEFALIVPNKSVRIARQLADTNRRSLEKLSIKDRRSGEQVGNITAS 301

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+AE    E   ++I RAD+ LY AK  GRNRV+
Sbjct: 302 FGVAELEPGESPQSLIERADRLLYEAKTLGRNRVM 336


>gi|91791590|ref|YP_561241.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91713592|gb|ABE53518.1| diguanylate cyclase/phosphodiesterase with Phytochrome (GAF) sensor
           [Shewanella denitrificans OS217]
          Length = 710

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 25/176 (14%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNF 146
            I  N++  ++  D L+G+ N   F   L S        N++ +I   D+D FK +ND +
Sbjct: 276 LIEKNQLEIIALKDPLTGIANRLMFERKLKSALQQALEANQQFAIYMIDLDRFKPVNDTY 335

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-----EQEAAILANDLRK 201
           GH VGD+++  ++ +L  +      V RLGG+EFA   LG S     E+ A ++  ++++
Sbjct: 336 GHAVGDELLIQVTQRLQALLRCEDMVARLGGDEFAVIQLGISNKGDIERIAKLMVEEVKR 395

Query: 202 --IIENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRN 253
             +IE   I I  G SI ITI       C  + IS   ++  AD ALY  KKSGRN
Sbjct: 396 PFLIEGKNIEI--GASIGITI-------CPLDAISQTELLLGADLALYEVKKSGRN 442


>gi|85858866|ref|YP_461068.1| response regulator [Syntrophus aciditrophicus SB]
 gi|85721957|gb|ABC76900.1| response regulator protein with GGDEF domain [Syntrophus
           aciditrophicus SB]
          Length = 356

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 9/186 (4%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132
           +L+ YI+     ++    N++  +S  D L+G+ N   F       +     Y+  LS++
Sbjct: 168 VLVAYIATMFASDIRYGLNKVKMMSETDELTGIYNRRGFAIVAGRLLGQSARYSRPLSLL 227

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D D  K+IND +GH  GD+++  L + +         + R GG+EF      +    A
Sbjct: 228 LIDSDNLKKINDEYGHHAGDQLLITLVNTIQAQLRHTDILARHGGDEFIILLPETPPSGA 287

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSG 251
             +A  +R  IE + I +  G  +H T S G+A        I  ++ +AD  +Y AK  G
Sbjct: 288 LDVAERIRNAIETTPI-VLEGKIVHTTASIGVASYPSEGYNIDVLLAQADHKMYAAKLGG 346

Query: 252 RNRVVC 257
           RNRVV 
Sbjct: 347 RNRVVM 352


>gi|327393645|dbj|BAK11067.1| GGDEF family protein YedQ [Pantoea ananatis AJ13355]
          Length = 390

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 123/263 (46%), Gaps = 44/263 (16%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLE-------- 62
           +WL       +F P   +++  + F +     +F+ N        T   G++        
Sbjct: 143 LWLARRDMNTTFWPAQLLLWTHLLFHV---ARLFLDN--------TRPVGIQGAISGSDF 191

Query: 63  --YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
             Y+++E++ L +I  T+++L      +++ E   + N +   S  D L+ + N  A  S
Sbjct: 192 SIYVILESM-LFVIGFTVTIL------AMVNER--TRNALKDASLHDPLTNIWNRRALFS 242

Query: 121 SLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              +        N+ L++V FD+D+FK IND +GH  GD+V+    +++           
Sbjct: 243 GADAMIRFCLKQNKALTVVLFDLDHFKGINDRYGHQQGDRVLIDFCNRVSGTLPQDGRFA 302

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-P 232
           RLGGEEF AA L  S ++A +    +R+ +++S+        I  ++S G A   + E  
Sbjct: 303 RLGGEEF-AALLPLSFEQARVWCEQVRQTVQHSRPG-----QIAYSVSIGFATADNGEID 356

Query: 233 ISTIIYRADQALYVAKKSGRNRV 255
              ++  AD+ALY AK  GRNR 
Sbjct: 357 FGQLMALADKALYRAKAKGRNRT 379


>gi|320326437|gb|EFW82490.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320331591|gb|EFW87529.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330985840|gb|EGH83943.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 420

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 32/228 (14%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F+ L    +   +L I+   + L+   I+ ++  E +       Q++  D L+GL    A
Sbjct: 194 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 243

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
               +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        R GG
Sbjct: 244 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAYRYGG 303

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218
           EEFA      +  E       +R+ I N +I   N  S P                S+ +
Sbjct: 304 EEFAIVFAAKTIDECMPHLEAIRETIANYEIQLRNKDSRPQDDQQGRQRRGGAQAGSVSV 363

Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           T+S G+AER   H+ P   ++  ADQALY AK +GRN VV +  +   
Sbjct: 364 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 410


>gi|294012414|ref|YP_003545874.1| putative diguanylate cyclase [Sphingobium japonicum UT26S]
 gi|292675744|dbj|BAI97262.1| putative diguanylate cyclase [Sphingobium japonicum UT26S]
          Length = 390

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/154 (39%), Positives = 79/154 (51%), Gaps = 6/154 (3%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D LSGLLN   F  ++G    KL    S++  DID+FK IND  GH +GD+VI  L+  L
Sbjct: 215 DPLSGLLNRRGFDDAIGQRTRKLPTQGSLIVCDIDHFKTINDAHGHALGDRVIVALARIL 274

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
           +          R GGEEF      +    AA  AND+R+ +   ++    G S  +T S 
Sbjct: 275 MEFAPADAITARFGGEEFIMFLPDADAARAATTANDIRESVAR-EVASHLGLSRPLTASF 333

Query: 223 GI-AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G+ A +     I   I RAD ALY AK  GRNRV
Sbjct: 334 GLSAVQPGDAAIHDAIARADAALYEAKMHGRNRV 367


>gi|258620242|ref|ZP_05715281.1| GGDEF family protein [Vibrio mimicus VM573]
 gi|258587600|gb|EEW12310.1| GGDEF family protein [Vibrio mimicus VM573]
          Length = 411

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 17/181 (9%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           K+L+ +  ++  LS  D L+GL N    +  L           +    V  D+D FK++N
Sbjct: 233 KQLYQANRQLEALSLTDSLTGLPNRRKAMHQLALHWNLAREQKKPFVCVMIDVDGFKEVN 292

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D++GH +GDKV+  ++  L   F     V RLGG+EF A    +       +A  +   +
Sbjct: 293 DSYGHDIGDKVLTIIAHALKDHFRNDDLVCRLGGDEFLAICPNTDAVSGVHIAEHVCDEV 352

Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           E  +I +  G     ++S G+AE     + H E    ++  ADQA+Y+AK +G+NRV  F
Sbjct: 353 ELLEIPV-EGIHWQGSVSMGVAEFDPNMKDHHE----LLRAADQAVYLAKNNGKNRVCAF 407

Query: 259 S 259
           +
Sbjct: 408 N 408


>gi|296123116|ref|YP_003630894.1| diguanylate cyclase [Planctomyces limnophilus DSM 3776]
 gi|296015456|gb|ADG68695.1| diguanylate cyclase [Planctomyces limnophilus DSM 3776]
          Length = 650

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 110/241 (45%), Gaps = 27/241 (11%)

Query: 42  VIFIANIF--------LFYIGLTPFYGLEYILVE-NLSLVIISI------TISLLLGYIS 86
           V+F++NI         LF + L+       ++++ N  LV +++      T + +  +++
Sbjct: 265 VVFLSNIEERCRQAAELFNVSLSHLQNSADLMIQANEQLVQLALREHVASTQASIRQHVA 324

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
               +EL      + Q +  D L+G+ N   F       +       + L+++F D+D+F
Sbjct: 325 EQEKRELETRNRELQQQALHDPLTGVHNRKFFDEVLLREVHRCVRAAQPLAVIFIDVDHF 384

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND FGH  GD+V+  ++            + R GGEEF       SE+    LA  +
Sbjct: 385 KNVNDTFGHQFGDQVLKRVAQIFSETVRVADTLARFGGEEFVVLVSQPSEKGVERLAERI 444

Query: 200 RKIIENSQINISSGPSIHITISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           R+ +E       S P + IT+S G    I  R        +I  AD+ LY AK++GRNR 
Sbjct: 445 RENVEKEAFRFGSTP-VKITVSVGAAIAIPRRGETGIGDRLIAVADECLYEAKRNGRNRT 503

Query: 256 V 256
           +
Sbjct: 504 I 504


>gi|229591627|ref|YP_002873746.1| putative sensory box GGDEF/EAL domain-containing protein
           [Pseudomonas fluorescens SBW25]
 gi|229363493|emb|CAY50722.1| putative sensory box GGDEF/EAL domain protein [Pseudomonas
           fluorescens SBW25]
          Length = 1100

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 67/208 (32%), Positives = 104/208 (50%), Gaps = 19/208 (9%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
           + ++ T  LLL     S+LK    +  +I  L+  D L+ L N +         I+ L  
Sbjct: 634 ITLNETPCLLLTARDVSLLKN---AQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKR 690

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-- 182
           +N + +++F D+D+FK IND+ GHPVGD V+  ++ +L         V RLGG+EF    
Sbjct: 691 HNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIVTARLEASVRMEDTVARLGGDEFVVLL 750

Query: 183 AALGSSEQEAAI----LANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTII 237
           + L  S  E +     LA+ LR+++  S+     G  + +T S G+A    H    + ++
Sbjct: 751 SGLDGSRMEVSAQVQELADTLRELL--SEPMFLDGHRLQVTPSIGVALIPDHGSTPADLL 808

Query: 238 YRADQALYVAKKSGRNRVVCFSDIENNT 265
            RAD ALY AK SGRN    F +    T
Sbjct: 809 KRADIALYRAKDSGRNTTQMFHNSMQKT 836


>gi|227885616|ref|ZP_04003421.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 83972]
 gi|300940411|ref|ZP_07154996.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
 gi|300975482|ref|ZP_07173030.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1]
 gi|301050682|ref|ZP_07197544.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1]
 gi|227837189|gb|EEJ47655.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 83972]
 gi|300297639|gb|EFJ54024.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1]
 gi|300410372|gb|EFJ93910.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1]
 gi|300454805|gb|EFK18298.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
 gi|315286673|gb|EFU46106.1| diguanylate cyclase domain protein [Escherichia coli MS 110-3]
 gi|315290242|gb|EFU49620.1| diguanylate cyclase domain protein [Escherichia coli MS 153-1]
          Length = 558

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 9/185 (4%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           LL  Y+   ++  +++  + +   +  D L+ L N  A             ++    S++
Sbjct: 368 LLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAKLCHTHQHPFSVI 427

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G++  +A
Sbjct: 428 QVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEEFCVILPGANLTQA 487

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKS 250
           A +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+AK++
Sbjct: 488 AEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQA 547

Query: 251 GRNRV 255
           GRNRV
Sbjct: 548 GRNRV 552


>gi|297583861|ref|YP_003699641.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Bacillus selenitireducens MLS10]
 gi|297142318|gb|ADH99075.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus selenitireducens MLS10]
          Length = 778

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 103/201 (51%), Gaps = 19/201 (9%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH---SAFISS-LGSYNEKLSIVFF 134
           SL +  I    + EL     +I QL+  D L+GL+N     A IS  +     +  I++F
Sbjct: 327 SLTMMLIKHHDVTELVHKDEQIEQLAYFDQLTGLVNRYHFEAIISEKIKDIGHQFGIIYF 386

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-- 192
           D+D+FK+IND  GH  GD ++  +++ L  V      + RLGG+EFA     +SE  A  
Sbjct: 387 DLDHFKKINDTIGHFAGDYLLKQVAETLQGVLPDDATLARLGGDEFAVVLDETSEGHALM 446

Query: 193 AILANDLRKIIENSQ--INISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALY 245
            +L      I++ ++  +NI  G   +I+ SAGI       R H E +  +    D A+Y
Sbjct: 447 RLLEEVADTIVKTARKPVNI-DGVHYYISASAGIVVYPEHGRSHDELMKNV----DTAMY 501

Query: 246 VAKKSGRNRVVCF-SDIENNT 265
            AK  G+N+ + F ++I++ T
Sbjct: 502 KAKNDGKNKCIFFNAEIKDET 522


>gi|323499216|ref|ZP_08104193.1| hypothetical protein VISI1226_03320 [Vibrio sinaloensis DSM 21326]
 gi|323315604|gb|EGA68638.1| hypothetical protein VISI1226_03320 [Vibrio sinaloensis DSM 21326]
          Length = 566

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 71/133 (53%), Gaps = 5/133 (3%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAA 183
            E + +   DID+FK+IND  GH  GDKVI   +D +   F  P  + + R GGEEF   
Sbjct: 431 QEGIYLAILDIDHFKRINDVHGHQCGDKVIMHTADLMKKYFPKPGAISLARYGGEEFCVL 490

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              + E +A       R +IE +++N   G  +  T+S GI      + I+  I RAD+A
Sbjct: 491 FNANDENDAYEQCEMFRHMIEQAELNF-EGAEVRFTVSIGITSAEDSQHIT--IGRADKA 547

Query: 244 LYVAKKSGRNRVV 256
           LY AK  GRN+VV
Sbjct: 548 LYQAKGLGRNQVV 560


>gi|308187730|ref|YP_003931861.1| Inner membrane protein ycdT [Pantoea vagans C9-1]
 gi|308058240|gb|ADO10412.1| Inner membrane protein ycdT [Pantoea vagans C9-1]
          Length = 521

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 84/164 (51%), Gaps = 9/164 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+S  ++ D L+ LLN     + L  Y    +  S++  DID+FK +ND++GH VGD+VI
Sbjct: 359 RLSSEAQTDPLTQLLNRRGLNAVLEYYRTLRQPFSVLALDIDHFKNVNDSWGHDVGDRVI 418

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L         V R GGEEF     G++  EA I+A  +R  I  + +       
Sbjct: 419 QQVASTLRASARQSDVVCRNGGEEFLMLLPGTALDEAQIIAERVRLGIAEAWLTDVG--- 475

Query: 216 IHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             IT+S G+A         + T + +AD ALY AK +GRN V+ 
Sbjct: 476 -RITLSIGVAAWNGTQDAGLETSLKQADAALYAAKNAGRNCVIV 518


>gi|302339267|ref|YP_003804473.1| response regulator receiver modulated diguanylate cyclase
           [Spirochaeta smaragdinae DSM 11293]
 gi|301636452|gb|ADK81879.1| response regulator receiver modulated diguanylate cyclase
           [Spirochaeta smaragdinae DSM 11293]
          Length = 565

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 83/163 (50%), Gaps = 8/163 (4%)

Query: 107 DCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLNH+     L       S +E  L+    D D+FK++ND +GH  GD+V+  L+
Sbjct: 401 DSLTGLLNHTNLKEHLSRELLRASRSETFLTFAMIDADHFKRVNDTYGHLTGDRVLKNLA 460

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L+        +GR GGEEF    L +    A  + N++R+   +  I  S      +T
Sbjct: 461 RLLLDRLRRTDIIGRYGGEEFGIILLNTDVTAAEHIMNEIRENF-SRVIQQSESKQFFVT 519

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            S GIA        ST+   AD+ALY AK++GRNRVV +   E
Sbjct: 520 FSCGIAGFPECADASTLTLAADKALYSAKENGRNRVVVYHHQE 562


>gi|262165381|ref|ZP_06033118.1| GGDEF family protein [Vibrio mimicus VM223]
 gi|262025097|gb|EEY43765.1| GGDEF family protein [Vibrio mimicus VM223]
          Length = 485

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 81/161 (50%), Gaps = 9/161 (5%)

Query: 101 SQLSRIDCLSGLLNHSAFISSL--GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ++L+  D ++GLLN       L    +N+ L+I   DID FKQIND +GH +GD+VI ++
Sbjct: 328 AELAARDPMTGLLNRRGMEGFLQGKRHNQYLAIAVLDIDDFKQINDTYGHDMGDRVICYI 387

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            +Q+     +   V R GGEEF         EQ   I+      +  +S   +  G    
Sbjct: 388 GEQIENHIRSSDAVARFGGEEFVVYVTAKEQEQIHRIMQRIFDAVCHDSAQILDQG---- 443

Query: 218 ITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            TIS G  I E   +     +   ADQ LYVAK SG+N++V
Sbjct: 444 FTISGGVEIVESKTELTFEELFKAADQKLYVAKSSGKNQLV 484


>gi|257483066|ref|ZP_05637107.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|331011700|gb|EGH91756.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 420

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 32/228 (14%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F+ L    +   +L I+   + L+   I+ ++  E +       Q++  D L+GL    A
Sbjct: 194 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 243

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
               +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        R GG
Sbjct: 244 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAYRYGG 303

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218
           EEFA      +  E       +R+ I N +I   N  S P                S+ +
Sbjct: 304 EEFAIVFAAKTIDECMPHLEAIRETIANYEIQLRNKDSRPQDDQQGRQRRGGAQAGSVSV 363

Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           T+S G+AER   H+ P   ++  ADQALY AK +GRN VV +  +   
Sbjct: 364 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 410


>gi|268680237|ref|YP_003304668.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618268|gb|ACZ12633.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 514

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 8/163 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDK 153
            Q  +ID L+ +    A  + LG   E         ++ F DIDYFK++ND FGH  GD 
Sbjct: 350 KQEVKIDFLTHVATKRALSAELGRVEEAFMRYKIDYTLCFIDIDYFKRVNDTFGHEAGDV 409

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +++ +   L        F GR GGEEF      +    A   A+ +R I+E  +  +   
Sbjct: 410 ILSTVGKILRKYVRQVDFAGRYGGEEFLVVLPSTDLVHAIHFADKIRSIVEQFKF-LYKN 468

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I +T+S G+A+R         +  AD  LY AK++GRN+V+
Sbjct: 469 ERISVTVSCGVAQRSQYTSKEETLSAADAFLYKAKEAGRNQVM 511


>gi|226356672|ref|YP_002786412.1| c-di-GMP phosphodiesterase A [Deinococcus deserti VCD115]
 gi|226318662|gb|ACO46658.1| putative c-di-GMP phosphodiesterase A [Deinococcus deserti VCD115]
          Length = 821

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 52/161 (32%), Positives = 89/161 (55%), Gaps = 8/161 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS----YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           R++  +  D L+GL+N +AF ++L +      + L ++F D+D+FKQ+ND  GHPVGD +
Sbjct: 381 RLAYQAGHDALTGLMNRAAFEATLEAAVLGTQDALGVLFIDLDHFKQVNDTLGHPVGDAL 440

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213
           +  ++ +L+        V R GG+EF        E EAA  A   ++I+E   + +  +G
Sbjct: 441 LVQVAQRLLQCVRDHDLVARQGGDEFTVLLRNVQEHEAAERA--AQRILEALSVPVELAG 498

Query: 214 PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
             + +T S GIA        ++T+   AD A+Y+AK+  R+
Sbjct: 499 RQLTVTASIGIALFPQDGTDVTTLQKNADLAMYLAKRERRS 539


>gi|148977485|ref|ZP_01814074.1| putative sensory box/GGDEF family protein [Vibrionales bacterium
           SWAT-3]
 gi|145963280|gb|EDK28546.1| putative sensory box/GGDEF family protein [Vibrionales bacterium
           SWAT-3]
          Length = 618

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 89/183 (48%), Gaps = 24/183 (13%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLS-IVFFDIDY 138
           S+ KEL +   R+  LS  D LS L N   F   L  Y        NE  + +   DID 
Sbjct: 444 SVRKELEV---RLRFLSERDALSNLWNRRKFEEQLAYYSRLVERYPNEATTCLALVDIDN 500

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND  GH  GD+VIA ++  L     +  FV R+GGEEFA     +S  EA      
Sbjct: 501 FKRINDELGHDEGDRVIARVAKLLQDSLRSTDFVARVGGEEFALLMPHTSLPEA------ 554

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-V 256
            +++++  +I I       +T+S G  +       ST  Y+ AD  LY +K SGRN V +
Sbjct: 555 -KRVLDRLRIEIELSAGTKVTVSVGFTDLTSN---STRSYKCADVGLYESKSSGRNTVSI 610

Query: 257 CFS 259
           C S
Sbjct: 611 CPS 613


>gi|71909585|ref|YP_287172.1| GGDEF [Dechloromonas aromatica RCB]
 gi|71849206|gb|AAZ48702.1| GGDEF protein [Dechloromonas aromatica RCB]
          Length = 523

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 91/170 (53%), Gaps = 21/170 (12%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  +++ D L+GL N + F       ++    ++ + ++VF D+D+FK INDN+GH +GD
Sbjct: 357 LRHMAQHDPLTGLPNRALFSDRLHKELARAKRHDGQFALVFLDLDHFKPINDNYGHAIGD 416

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKII------EN 205
            V+  ++ +L         VGR+GG+EF       +E +AA+ LA  +R++I      + 
Sbjct: 417 LVLQQVALRLKDTVRESDTVGRIGGDEFVVLVPELAESDAALSLAEKIRQVIRQPFALDG 476

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            Q++IS    + I    GI E        ++  RAD+A+Y AK  GR+ V
Sbjct: 477 RQLDISCSLGVAIYPDDGIDE-------ISLTKRADEAMYRAKDDGRDSV 519


>gi|114321658|ref|YP_743341.1| diguanylate cyclase with PAS/PAC sensor [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114228052|gb|ABI57851.1| diguanylate cyclase with PAS/PAC sensor [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 419

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 84/181 (46%), Gaps = 11/181 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           +G  + E       + + +  D L+GL N  +F   L         Y   LS++ FD+D+
Sbjct: 242 TGKDITERVRMEEELKRAATTDALTGLANRLSFEQLLERDYERCRRYGGALSLLMFDLDH 301

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND  GH  GD V+  L+  ++    T   V R GGEEF      +    A  LA  
Sbjct: 302 FKAVNDAHGHEAGDAVLQALAGLVLANVRTADTVARWGGEEFMVLLPETPLAAAGELAEK 361

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           LR+ +   +      P   +T S G+      +   T++ RAD+ALY AK  GR+RV C 
Sbjct: 362 LRERVAAHRFP-HGAP---VTASFGVCALRDDDTCRTLVRRADEALYRAKHLGRDRVECL 417

Query: 259 S 259
           S
Sbjct: 418 S 418


>gi|323978291|gb|EGB73377.1| GGDEF domain-containing protein [Escherichia coli TW10509]
          Length = 298

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 7/165 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S +D L+GL        S            L ++  DID FK +ND +GH +GD V+  L
Sbjct: 131 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 190

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF      ++++EA      + ++++N  I  S G  I+I
Sbjct: 191 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGIRICQLVDNHAITHSEG-HINI 249

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AG++    +E +  +I RAD+A+Y  K++GRNR + F D +N
Sbjct: 250 TVTAGVSRAFPEESLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 293


>gi|312173166|emb|CBX81421.1| Protein adrA [Erwinia amylovora ATCC BAA-2158]
          Length = 532

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 84/163 (51%), Gaps = 9/163 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+   ++ D L+GLLN     + L    S  +  +++  DID FK +ND FGH  GD VI
Sbjct: 361 RLKSEAQTDPLTGLLNRRGLDAVLDYFLSTGQPFALLALDIDRFKGVNDAFGHAAGDTVI 420

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++ QL +       + R GGEEF     G+    A ++A  +RK IE  QI+      
Sbjct: 421 KTVAQQLGLGARQSDILCRNGGEEFLMILPGADRDRALMIAERVRKRIEQFQIDAIG--- 477

Query: 216 IHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            ++TIS GI+      +  +     +AD+ALY AK +GRN VV
Sbjct: 478 -NVTISIGISFWSSDSENDMHDAFGQADEALYRAKNTGRNCVV 519


>gi|306814221|ref|ZP_07448387.1| putative diguanylate cyclase [Escherichia coli NC101]
 gi|305852380|gb|EFM52831.1| putative diguanylate cyclase [Escherichia coli NC101]
          Length = 558

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 9/185 (4%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           LL  Y+   ++  +++  + +   +  D L+ L N  A             ++    S++
Sbjct: 368 LLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAKLCHTHQHPFSVI 427

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G++  +A
Sbjct: 428 QVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEEFCVILPGANLTQA 487

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKS 250
           A +A  +R  +   ++ I+   +I I+ S G+  +E         +   AD+ LY+AK++
Sbjct: 488 AEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQA 547

Query: 251 GRNRV 255
           GRNRV
Sbjct: 548 GRNRV 552


>gi|298489177|ref|ZP_07007196.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298156259|gb|EFH97360.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 432

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 32/228 (14%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F+ L    +   +L I+   + L+   I+ ++  E +       Q++  D L+GL    A
Sbjct: 206 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 255

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
               +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        R GG
Sbjct: 256 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAYRYGG 315

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218
           EEFA      +  E       +R+ I N +I   N  S P                S+ +
Sbjct: 316 EEFAIVFAAKTIDECMPHLEAIRETIANYEIQLRNKDSRPQDDQQGRQRRGGAQAGSVSV 375

Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           T+S G+AER   H+ P   ++  ADQALY AK +GRN VV +  +   
Sbjct: 376 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVTYGQLNRR 422


>gi|253687722|ref|YP_003016912.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251754300|gb|ACT12376.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 353

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 88/184 (47%), Gaps = 10/184 (5%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
            + LGY++ +   +L      + ++S  D ++ L N   +   L         Y    ++
Sbjct: 168 PIFLGYVTYNTALKLAEHKRMLMEVSIHDGMTNLYNRHHWERLLKHEFDLCQRYKRTATL 227

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           V FDID+FK  NDNFGH VGD+ I  L+ +L   F     +GR GG+EFA     +S  E
Sbjct: 228 VLFDIDHFKAFNDNFGHNVGDQAILLLARELTSGFRETDVIGRFGGDEFAVILPQTSAGE 287

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250
           A    + +R+ +    +N +  P + + +S GIAE           +  AD ALY AK  
Sbjct: 288 ALDAVSRIRESLSLKFLNQT--PQLAVFVSVGIAEISPEMGQYMDWLKSADMALYRAKNK 345

Query: 251 GRNR 254
           GR R
Sbjct: 346 GRRR 349


>gi|288817375|ref|YP_003431722.1| diguanylate cyclase (GGDEF motif) with PAS/PAC sensor
           [Hydrogenobacter thermophilus TK-6]
 gi|288786774|dbj|BAI68521.1| diguanylate cyclase (GGDEF motif) with PAS/PAC sensor
           [Hydrogenobacter thermophilus TK-6]
 gi|308750982|gb|ADO44465.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobacter
           thermophilus TK-6]
          Length = 523

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 13/170 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSA---FIS----SLGSYNEKLSIVFFDIDYFKQIND 144
           E  I+  ++ +L   D L+ + N  A   F+S        Y     IVFFDID FK+IND
Sbjct: 356 ERKIAEKKLRRLIMYDGLTQIYNRYALEEFLSRELVKAERYKLPFGIVFFDIDDFKRIND 415

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH +GD V+  L+  +          GR GGEEF    +    ++ A  A  +RK++E
Sbjct: 416 TYGHKMGDMVLKRLARLVKGNIRKADIFGRWGGEEF--LIILPQLEDPAAFAEKIRKMVE 473

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           ++  +      I +TIS G+      + + TI+ R D  LY AK+ G+NR
Sbjct: 474 STVFD----KGIKVTISLGVTTYREGDTVDTILRRVDAGLYRAKREGKNR 519


>gi|257469735|ref|ZP_05633827.1| diguanylate cyclase/phosphodiesterase [Fusobacterium ulcerans ATCC
           49185]
 gi|317063967|ref|ZP_07928452.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689643|gb|EFS26478.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 447

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 91/176 (51%), Gaps = 16/176 (9%)

Query: 96  SYN-RISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIV-------FFDIDYFKQINDNFG 147
            YN  + + +  D ++ LLN  A +  L S N K+ I+        FD+D FK+IND +G
Sbjct: 277 QYNYELKKKAEYDAVTDLLNR-ATLEELISLNLKIDIMKGINIFMIFDVDDFKEINDTYG 335

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIE- 204
           HP GD V+  ++D     F +   +GRLGG+EFA     + S E     L   L K+   
Sbjct: 336 HPFGDIVLHKIADIFKESFRSVDIIGRLGGDEFAVFLPQISSIEWIIQKLKGVLPKVKRL 395

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + ++NI       I+IS GI E    +    I  +AD+ALY AKKSG+N    +SD
Sbjct: 396 SKELNIEKS----ISISIGIYEIQFSDSFREIFIKADKALYQAKKSGKNGYEFYSD 447


>gi|218548982|ref|YP_002382773.1| hypothetical protein EFER_1630 [Escherichia fergusonii ATCC 35469]
 gi|218356523|emb|CAQ89146.1| conserved hypothetical protein; PAC/PAS and GGDEF domains
           [Escherichia fergusonii ATCC 35469]
          Length = 412

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 79/165 (47%), Gaps = 11/165 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q +  D L+GLLN   F        S  G  ++  S++  D D FK +ND +GH  GD
Sbjct: 251 LEQAAMRDALTGLLNRRQFFLLTEHNSSQPGLMSQDYSLLLIDTDRFKSVNDLYGHQKGD 310

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  L+  L         V R GGEEF      ++  +A  LA  +R  +  ++I ++ 
Sbjct: 311 DVLCVLARTLESCARKGDLVFRWGGEEFVLLLPRTTLDDALALAETIRAQV--AKITLTG 368

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            P    T+S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 369 LP--RFTVSIGVARHEIDETIDALFKRVDDALYRAKNDGRNRVLA 411


>gi|188581693|ref|YP_001925138.1| diguanylate cyclase [Methylobacterium populi BJ001]
 gi|179345191|gb|ACB80603.1| diguanylate cyclase [Methylobacterium populi BJ001]
          Length = 403

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 7/185 (3%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVF--FDI 136
           S+ + ++  ++ KE      R++  +  D L+G+ N  A ++    +          FD+
Sbjct: 197 SVAIAFVFMALTKERAEREQRLA--AETDALTGIANRRALVAGAERHLAVAPAALLLFDL 254

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK IND +GH VGD V+A        +       GR+GGEEFA       E+ AA + 
Sbjct: 255 DRFKAINDRYGHSVGDAVLAAFCTIAAPLLPPEAVFGRMGGEEFACLLPRLDERAAARVG 314

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
             +R  +     +    P + + +S G+A        +  ++ RAD ALY AK +GR+RV
Sbjct: 315 ERVRAAVAG--FDHPDYPDLAMRVSVGVAAESQIGGSLDYLLRRADDALYRAKHAGRDRV 372

Query: 256 VCFSD 260
           V   D
Sbjct: 373 VTAGD 377


>gi|149186974|ref|ZP_01865282.1| diguanylate cyclase with PAS/PAC sensor [Erythrobacter sp. SD-21]
 gi|148829363|gb|EDL47806.1| diguanylate cyclase with PAS/PAC sensor [Erythrobacter sp. SD-21]
          Length = 594

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 11/162 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+G+ N    +++L          +E L++   DID+FK IND FGH VGD
Sbjct: 431 VRMLAETDALTGMPNRRYILANLAEAMDANEFRHEPLTVAMVDIDHFKAINDEFGHEVGD 490

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L+    +   VGR+GGEEF          E  +  + +R+ +   +     
Sbjct: 491 TVLKQIAAILMDELRSDDSVGRMGGEEFLFVFPKRRAAELDLRCDRMRERLAAEEWE--- 547

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
              + +T+S GIAE         ++  AD+ALY AK++GRNR
Sbjct: 548 -HPMTVTLSIGIAELQPGWDERDLLRAADEALYEAKRAGRNR 588


>gi|20807566|ref|NP_622737.1| diguanylate cyclase/phosphodiesterase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516102|gb|AAM24341.1| Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF)
           [Thermoanaerobacter tengcongensis MB4]
          Length = 670

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 79/154 (51%), Gaps = 11/154 (7%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ + N   F+  L    E++       S++ FD+D+FK +ND FGH  GD V+  ++
Sbjct: 516 DPLTNIYNRRFFMQMLEQEIERVKRNKKPFSLIMFDLDHFKNVNDRFGHAAGDTVLRSVA 575

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + +        +  R GGEEF      +S   AA LA +LRK I  + ++        +T
Sbjct: 576 NTVKKRIRKTDYFARWGGEEFIILLPETSLNNAAELAEELRKKISETALDGIG----KVT 631

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            S G+ E  + + + T++ R D ALY AK SGRN
Sbjct: 632 ASFGVTEYRNTDTMDTVLLRVDGALYEAKGSGRN 665


>gi|313496579|gb|ADR57945.1| Diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida BIRD-1]
          Length = 342

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 78/130 (60%), Gaps = 4/130 (3%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+ +  DID FK+IND++GH  GD+V+  ++D    V       GR+GGEEFAA   G +
Sbjct: 213 LAFLLLDIDDFKRINDSYGHQEGDQVLQHIADSGKAVLRRGDLFGRIGGEEFAAVFPGCN 272

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKE-PISTIIYRADQALYV 246
            Q A  +A  L++ I++  ++ S G   + +T+S G+     ++  + ++  RAD A+Y 
Sbjct: 273 AQVAEQIAERLQRQIQH--LSFSHGQQTYGVTVSQGLTGLTDEDVALDSLYARADAAMYQ 330

Query: 247 AKKSGRNRVV 256
           AK+ G+N++V
Sbjct: 331 AKRQGKNQIV 340


>gi|183221987|ref|YP_001839983.1| hypothetical protein LEPBI_I2628 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912054|ref|YP_001963609.1| GGDEF domain receiver component of a two- component response
           regulator [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167776730|gb|ABZ95031.1| GGDEF domain receiver component of a two- component response
           regulator [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167780409|gb|ABZ98707.1| Hypothetical protein LEPBI_I2628 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 406

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 92/173 (53%), Gaps = 15/173 (8%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y+   +L  +D L+ L N   F ++L         YN  LS++  DID FK+IND +GH 
Sbjct: 125 YSETEKLILVDELTRLYNRRHFETALLREFKQSTRYNLNLSLLIIDIDDFKKINDTYGHL 184

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-I 208
           +GD+++  ++ ++           R+GGEEFA     S+E +A   A    K++E  + I
Sbjct: 185 MGDEILKQIASKISTSLRMEDTACRIGGEEFAIIFPQSNESQALKAAE---KLLEACRTI 241

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSD 260
            IS  P   +TIS G+     K      +Y  AD+ALY AK +G+N+++ +S+
Sbjct: 242 QISGKP---VTISGGLVSYPEKVKRCEDMYDLADRALYTAKDTGKNQIIVYSN 291


>gi|156935524|ref|YP_001439440.1| hypothetical protein ESA_03386 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533778|gb|ABU78604.1| hypothetical protein ESA_03386 [Cronobacter sakazakii ATCC BAA-894]
          Length = 355

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 90/176 (51%), Gaps = 6/176 (3%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQ 141
           ++  +++ L      ++ LS +D L+GL N   F +   + +       ++  DID+FK 
Sbjct: 172 LARQMVQTLIDEKATLNDLSMMDPLTGLCNRRGFENRFANLSPDAGQRFVLLMDIDHFKA 231

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            ND++GH +GD+ +  +S  +     +   V R GGEEF      + E+ A + A  +R+
Sbjct: 232 YNDHYGHMMGDQALTRVSAAIRDAVRSRDIVTRYGGEEFMVLLTQADEKSARLTAERIRQ 291

Query: 202 IIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + + +I    +   + ++T+S GIA     + I   + RAD+ALY AK  GRN +
Sbjct: 292 RVYDLRIPHIFNESVATNVTLSIGIAP-LENDDIEDALRRADEALYAAKNQGRNHI 346


>gi|90022028|ref|YP_527855.1| response regulator receiver modulated diguanylate cyclase
           [Saccharophagus degradans 2-40]
 gi|89951628|gb|ABD81643.1| response regulator receiver modulated diguanylate cyclase
           [Saccharophagus degradans 2-40]
          Length = 434

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 101/206 (49%), Gaps = 15/206 (7%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAF 118
           G +  LV+ +S +IIS  I  +        ++    + NR +  LS+ D L+ L N   F
Sbjct: 96  GGDDYLVKPVSQMIISAKIRAMERITD---MRNQLATLNRELKVLSQRDGLTHLYNRRTF 152

Query: 119 IS------SLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-M 170
                    + + N+  L+++  DID+FKQ ND +GH  GD+ I  +S  L      P  
Sbjct: 153 EELAEKQWKIATRNKAPLAVLLLDIDHFKQYNDYYGHQQGDRCIQTISSVLAKCVTRPDD 212

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCH 229
            +GR GGEEF      + E  A  +A  +RK +E  QI   + PS  ++T+S G A   +
Sbjct: 213 LIGRYGGEEFIILLPNTPENGAHYIAEQIRKSVERLQIKHRASPSNTYVTVSIGGAALNY 272

Query: 230 KEPISTI--IYRADQALYVAKKSGRN 253
               +    +  AD+ALY AK SGRN
Sbjct: 273 TTGTTWAHQVGLADKALYTAKASGRN 298


>gi|323495182|ref|ZP_08100266.1| diguanylate cyclase [Vibrio brasiliensis LMG 20546]
 gi|323310541|gb|EGA63721.1| diguanylate cyclase [Vibrio brasiliensis LMG 20546]
          Length = 439

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 5/154 (3%)

Query: 107 DCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+ + N S F       L +  + L++V  DID+FK+IND +GH VGD  ++  ++  
Sbjct: 264 DPLTKVSNRSHFFEVGERLLRNEEQPLAVVLIDIDHFKKINDKYGHHVGDAALSSFAEIC 323

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                    +GR+GGEEFA      + + A ++   +R  +       + G  + +TIS 
Sbjct: 324 CREIRASDVIGRIGGEEFAVILRNVTPEIAHVITERIRNSVAERYFE-ADGVKLLMTISI 382

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G+     +  + ++I  AD ALY AK  GRNRVV
Sbjct: 383 GVVYSEQEHHLESLIKEADSALYQAKAGGRNRVV 416


>gi|308049636|ref|YP_003913202.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
 gi|307631826|gb|ADN76128.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
          Length = 375

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 83/173 (47%), Gaps = 11/173 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + + ++   +L+  D L+GL         L      + I   D+D+FK  ND  GH  GD
Sbjct: 203 MLVVFDGAYRLAFRDGLTGLPARRTLDGDLSDTGALVHIAMLDVDHFKAFNDTHGHTWGD 262

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +  L+ +L  V G   +  R GGEEF      ++  E       LR  +E   + ++ 
Sbjct: 263 LALRELATKLRRVKGARAY--RYGGEEFTLVFRKANRTEVVAALEALRVAVEEGTMVVTQ 320

Query: 213 ----GPSIHI----TISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVV 256
               G ++ +    TIS G+A+R    E I T++ RAD ALY AK+ GRNR+V
Sbjct: 321 SGKDGNTLPVRASLTISVGVAQRHGQHEQIGTVLKRADMALYRAKEEGRNRIV 373


>gi|255263256|ref|ZP_05342598.1| diguanylate cyclase [Thalassiobium sp. R2A62]
 gi|255105591|gb|EET48265.1| diguanylate cyclase [Thalassiobium sp. R2A62]
          Length = 171

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 18/162 (11%)

Query: 103 LSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           L+R D L+GL N              +  G+    +S+V  DID FK +ND  GH +GD+
Sbjct: 7   LARTDELTGLSNRRDLEISAKRVLLDADRGAV--PVSLVMLDIDRFKAVNDTHGHDIGDQ 64

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           VI  L+D L         V RLGG+EF      +   EA  L N + + +   ++N    
Sbjct: 65  VIRALADVLKSTCRENDIVARLGGDEFVCVLNNTDASEATALCNRIHEAVAGIRVN---- 120

Query: 214 PSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRN 253
            +  IT+S G+A + H   ++   ++  ADQ LY+ K++GRN
Sbjct: 121 -ACQITVSIGLAIKPHNRQVALPDMLSLADQCLYIVKENGRN 161


>gi|239907750|ref|YP_002954491.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239797616|dbj|BAH76605.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 289

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           L LV  + T ++ +G +   ++K L  +  +    SR D LSGL N   F+  LG+    
Sbjct: 89  LPLVCNTTTRAVTIGCVI-VLMKRLRRALQQEWDNSRQDLLSGLWNRRYFLE-LGATILT 146

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               ++  +++ F D+D FK++ND  GH VGD ++  ++  +   F     + RLGG+EF
Sbjct: 147 FAKRHDLPVTMAFMDLDRFKEVNDTLGHAVGDDLLRTVAAAMRAHFRYEDLLARLGGDEF 206

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQ------INISSGPSIHITISAGIAERCHKEPIS 234
           AA   G + Q+A      LR  I  +       + +S G    + +  GI +        
Sbjct: 207 AAIMPGMTAQDAQTRLESLRDKIREAMDQRRWPVTLSIGAVSFVVVEGGIED-------- 258

Query: 235 TIIYRADQALYVAKKSGRNRVV 256
            ++  AD  +Y AK +GR+R+V
Sbjct: 259 -MVSAADAVMYEAKAAGRDRLV 279


>gi|197334716|ref|YP_002157056.1| sensory box/ggdef family protein [Vibrio fischeri MJ11]
 gi|197316206|gb|ACH65653.1| sensory box/ggdef family protein [Vibrio fischeri MJ11]
          Length = 631

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 92/194 (47%), Gaps = 25/194 (12%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---------EKLSI 131
           ++ YI  +  KEL      +  LS  D LSG  N   F   L +            +  +
Sbjct: 450 IISYIDITKRKEL---EKELRYLSEKDVLSGCWNRRKFEFELENQTLLTQRYYPVHQCCL 506

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              DID FK+IND  GH VGD+VI  +SD L        FV R+GGEEFA     ++  +
Sbjct: 507 AILDIDLFKRINDTKGHDVGDQVIRLVSDILNNGSRETDFVARIGGEEFAIIMPHTTLID 566

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKK 249
           A ++ N LR       + +S     H+TIS G+ +  R  K+        AD ALY +K 
Sbjct: 567 AEMVINRLR-------VAVSQLEEYHVTISGGLTDLGRSKKDAYKC----ADLALYESKT 615

Query: 250 SGRNRVVCFSDIEN 263
           +GRN+V   S +E+
Sbjct: 616 NGRNQVSICSSLED 629


>gi|168214362|ref|ZP_02639987.1| GGDEF domain protein [Clostridium perfringens CPE str. F4969]
 gi|170714161|gb|EDT26343.1| GGDEF domain protein [Clostridium perfringens CPE str. F4969]
          Length = 299

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 74/129 (57%), Gaps = 4/129 (3%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSS 188
           +++  DID FK++ND +GH VGDK++   + +L   +     ++GR GGEEF      ++
Sbjct: 172 TVIMADIDSFKKVNDTYGHLVGDKILRDFAKELNNNIRENSDWIGRYGGEEFIIVLNNTN 231

Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVA 247
            +    +A  LRKIIE  +++   G  S+ IT S G+ E   KE     I  AD+ LY+A
Sbjct: 232 LKNGVKVAEKLRKIIE--KMSFDYGDLSLKITSSFGVCEVSEKEDPFDTIKNADEKLYMA 289

Query: 248 KKSGRNRVV 256
           K +GRN+ V
Sbjct: 290 KMTGRNKTV 298


>gi|319427747|gb|ADV55821.1| diguanylate cyclase with PAS/PAC sensor [Shewanella putrefaciens
           200]
          Length = 324

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 84/170 (49%), Gaps = 9/170 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +L  +  ++ +LS+ D L+ L N   +   L         YN+  S+V  DID FK IND
Sbjct: 144 QLKAANEQLERLSQTDGLTQLHNRRHWQLCLEHEFDLYARYNDIASLVMIDIDNFKYIND 203

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GDKVI  ++  L          GR GGEEFA     +S ++A      LR+ I 
Sbjct: 204 TYGHVAGDKVIQHIAHILSQSLRETDCAGRYGGEEFAVVMPKTSGEDALHFTERLREKIA 263

Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
            S I +     I +T+S G+ E   H    S  I  +D+ALY AK+ GRN
Sbjct: 264 ESTI-VYESLKIKVTVSLGVCEIGKHISSSSNWISCSDKALYEAKQKGRN 312


>gi|119898981|ref|YP_934194.1| GGDEF family protein [Azoarcus sp. BH72]
 gi|119671394|emb|CAL95307.1| GGDEF family protein [Azoarcus sp. BH72]
          Length = 610

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 83/172 (48%), Gaps = 20/172 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
           +  S+L R D L+G LN      +L         +   L +   D+D FKQ+ND +GH  
Sbjct: 443 DETSELVRHDPLTGALNRKGLDEALAREIARARRHGSPLCLALLDVDNFKQLNDTYGHRA 502

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKI-----IE 204
           GD  +  L   +         VGR GGEEF      + +EQ AA++    R++     + 
Sbjct: 503 GDDALRHLFSVIREAVRPQDAVGRYGGEEFLIVLPDTDTEQAAAVVVRLQRELTRRFFLA 562

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           NSQ        + IT SAGIA     E     I RAD+A+Y AK++G+NRV+
Sbjct: 563 NSQ-------KLLITFSAGIARLHADEDPQLAIDRADKAMYAAKRAGKNRVL 607


>gi|158315645|ref|YP_001508153.1| serine/threonine protein kinase [Frankia sp. EAN1pec]
 gi|158111050|gb|ABW13247.1| serine/threonine protein kinase [Frankia sp. EAN1pec]
          Length = 1726

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 13/176 (7%)

Query: 91   KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
            ++L  +  R+ QLSR D L+GL N       L +       ++  +++   DID+FK  N
Sbjct: 1543 QQLAAANRRLEQLSRTDSLTGLANRRRLEEVLDAEWHRARLHSTPIALAMIDIDHFKLYN 1602

Query: 144  DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            D+FGH  GD+ +  ++  L           R GGEEFA     +  + A  LA  LR+ +
Sbjct: 1603 DHFGHTAGDRCLQRVAAGLAASLRPTHMAARFGGEEFAVVMPDTGAETAVELARQLRRAV 1662

Query: 204  ----ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                E   + I    ++ I ++A I +    + ++  + RAD  LY AK+ GR+RV
Sbjct: 1663 AGLAEPHPLVIHRIVTVSIGVAATIPDP--GDEVAAFVERADIELYRAKRGGRDRV 1716


>gi|330967039|gb|EGH67299.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 730

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 106/209 (50%), Gaps = 21/209 (10%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G   +L  ++  + ++ T  LL+   +   + +L  +  +I  L+  D L+GL N S  +
Sbjct: 246 GAPLVLDVSVEFITLNNTACLLM---NARDIGQLKSAQAQIQHLAYHDPLTGLPNRSLLM 302

Query: 120 SSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L          N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         V
Sbjct: 303 DRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSVIAARLEASVRQEDTV 362

Query: 173 GRLGGEEFAA---AALGSSEQ---EAAILANDLRKIIENSQINISSGPSIHITISAGIA- 225
            RLGG+EF        GS EQ   +  +LA++LR ++  ++     G  + +T S GI  
Sbjct: 363 ARLGGDEFVVLICGLDGSLEQVTHQVRVLADNLRVLL--AEPMFLDGHRLQVTPSVGIVL 420

Query: 226 -ERCHKEPISTIIYRADQALYVAKKSGRN 253
                  P + ++ RAD ALY AK SGRN
Sbjct: 421 IPDDGLTP-ADLLKRADTALYRAKDSGRN 448


>gi|241662150|ref|YP_002980510.1| diguanylate cyclase [Ralstonia pickettii 12D]
 gi|240864177|gb|ACS61838.1| diguanylate cyclase [Ralstonia pickettii 12D]
          Length = 480

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 17/213 (7%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLL 113
           L P+  L +I+     L  +S++++   G ++    L+   ++ N + +L++ D L+GL 
Sbjct: 267 LAPWQRLSWIV----GLSSLSVSLAFCAGVWLLAFALRGRVMAENHLRELTQTDPLTGLK 322

Query: 114 NHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N  A           L   + +LS++F D D+FK+ ND  GH  GD  + +L+ Q +   
Sbjct: 323 NRRALDVALENEWDRLQRNDSRLSVLFIDADHFKRYNDAHGHAQGDVALQYLA-QCISKH 381

Query: 167 GTPM--FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG- 223
                    R GGEEF      + E  A  +A  +R  +E +   +        T+S G 
Sbjct: 382 ARRRGDLAARYGGEEFVVLLPDTGEAGATRIAEAIRAEVEGAGAPVGDTGLAPFTVSVGC 441

Query: 224 -IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             A R     ++ +   AD ALY AK+ GRNRV
Sbjct: 442 ATARRASFPSLNALTKAADDALYEAKRKGRNRV 474


>gi|254470292|ref|ZP_05083696.1| sensory box/ggdef family protein [Pseudovibrio sp. JE062]
 gi|211960603|gb|EEA95799.1| sensory box/ggdef family protein [Pseudovibrio sp. JE062]
          Length = 1031

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 90/174 (51%), Gaps = 15/174 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVF-FDIDYFKQINDNFGHPV 150
           RI  L++ D L+GL N + F       I +     E +S V   D+D FK IND +GHPV
Sbjct: 562 RILHLAQHDMLTGLPNRTYFRERFQQAIENQACAEETISAVMVLDLDRFKDINDLYGHPV 621

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIE--NSQ 207
           GDK+I  ++ +L         V RLGG+EFA   +   +  E  +L N   KIIE  +  
Sbjct: 622 GDKLIQTVARRLNACVTHHDTVARLGGDEFAIIQVNLKTTAEVGLLTN---KIIEVLSKP 678

Query: 208 INISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           I++ +  +I  + S GIA    H      ++ +AD ALY AK++GRN    F D
Sbjct: 679 IHVGNNITIRTSASIGIALIPEHGTDPDELMSKADIALYEAKEAGRNTFAFFED 732


>gi|190573463|ref|YP_001971308.1| putative transmembrane protein [Stenotrophomonas maltophilia K279a]
 gi|190011385|emb|CAQ45000.1| putative transmembrane protein [Stenotrophomonas maltophilia K279a]
          Length = 807

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 79/135 (58%), Gaps = 8/135 (5%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           ++ + ++D+FK +ND+FGH  GD+++   +D LV       +VGRLG +EFA     + +
Sbjct: 400 ALCYINLDHFKLVNDSFGHAAGDQMLRSFADYLVAAVRDGDWVGRLGADEFAVFLAHAGQ 459

Query: 190 QEAAILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALY 245
            EA  +   L+++I N   +   IS G S  ++ S G+ E     P ++ ++  AD A Y
Sbjct: 460 DEAKRV---LQRVIRNLGQATFPISEG-SPQLSCSIGVVEVSADAPDVNWLMSAADSACY 515

Query: 246 VAKKSGRNRVVCFSD 260
            AK++GRNRV CF++
Sbjct: 516 AAKQAGRNRVHCFNE 530


>gi|186473968|ref|YP_001861310.1| diguanylate cyclase [Burkholderia phymatum STM815]
 gi|184196300|gb|ACC74264.1| diguanylate cyclase [Burkholderia phymatum STM815]
          Length = 504

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 89/177 (50%), Gaps = 13/177 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQI 142
           L++  ++ +R+++L++ D L+GL N  A    L +  E+L       S+++ D D+FKQ 
Sbjct: 318 LRDRALAEDRLTELTQTDSLTGLKNRRALDEVLEAEWERLQRTASCLSVLYVDADHFKQY 377

Query: 143 NDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GDK +  L+D +            R GGEEF      +    AA +A  +R+
Sbjct: 378 NDKYGHAAGDKALKHLADCIAQRACRRSDCAARYGGEEFVVVLPDTDAANAARVAEGIRE 437

Query: 202 IIENS-QINISSGPS-IH-ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
            +E S      +G + +H  T+S G A   R     +  +   AD ALY AK +GRN
Sbjct: 438 ALERSWHARHEAGTAELHPFTVSVGCATGRRGCPATLDELTKAADLALYEAKNAGRN 494


>gi|330810802|ref|YP_004355264.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378910|gb|AEA70260.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 1092

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 101/196 (51%), Gaps = 19/196 (9%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
           + ++ T  LLL     S+L+    +  +I  L+  D L+ L N +         I+ L  
Sbjct: 632 ITLNETACLLLTARDVSLLRN---AEAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKR 688

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-- 182
           +N + +++F D+D+FK IND+ GHPVGD V+  ++ +L         V RLGG+EF    
Sbjct: 689 HNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLL 748

Query: 183 AALGSSEQEAA----ILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTII 237
           + L  S  E +     LA+ LR+++  S+     G  + +T S GIA    H    + ++
Sbjct: 749 SGLEGSRNEVSKQVRTLADTLRELL--SEPMFLDGQRLQVTPSIGIALIPDHGSTPTDLL 806

Query: 238 YRADQALYVAKKSGRN 253
            RAD ALY AK SGRN
Sbjct: 807 KRADIALYRAKDSGRN 822


>gi|324113194|gb|EGC07169.1| GGDEF domain-containing protein [Escherichia fergusonii B253]
          Length = 410

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 79/165 (47%), Gaps = 11/165 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q +  D L+GLLN   F        S  G  ++  S++  D D FK +ND +GH  GD
Sbjct: 249 LEQAAMRDALTGLLNRRQFFLLTEHNSSQPGLMSQDYSLLLIDTDRFKSVNDLYGHQKGD 308

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  L+  L         V R GGEEF      ++  +A  LA  +R  +  ++I ++ 
Sbjct: 309 DVLCVLARTLESCARKGDLVFRWGGEEFVLLLPRTTLDDALALAETIRAQV--AKITLTG 366

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            P    T+S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 367 LP--RFTVSIGVARHEIDETIDALFKRVDDALYRAKNDGRNRVLA 409


>gi|299133186|ref|ZP_07026381.1| diguanylate cyclase [Afipia sp. 1NLS2]
 gi|298593323|gb|EFI53523.1| diguanylate cyclase [Afipia sp. 1NLS2]
          Length = 563

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 10/184 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           +EL  + +R+  ++ +D +SGL N     + L     K       +S++  D+D+FK  N
Sbjct: 372 RELVATNDRLQVMASVDMISGLANRRGLQNRLEFEWRKAEQTGGPVSLIMIDVDHFKLFN 431

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GDK +  + + L  + G    F  R GGEEF      ++   A  +   +R +
Sbjct: 432 DTYGHLEGDKCLRQIGEALAAIAGEVTGFAARYGGEEFCLLLPKTNGIAAMEIGERVRAV 491

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSD 260
           +E   I  S      +T+SAG+A     +  S   +I  AD ALYVAK  GRN VV  + 
Sbjct: 492 VEALNIPHSMSAFQQVTVSAGMAAVAPGQAASVQDLIEAADAALYVAKHRGRNNVVAHAL 551

Query: 261 IENN 264
           I ++
Sbjct: 552 IRSD 555


>gi|254498802|ref|ZP_05111513.1| hypothetical protein LDG_2883 [Legionella drancourtii LLAP12]
 gi|254351966|gb|EET10790.1| hypothetical protein LDG_2883 [Legionella drancourtii LLAP12]
          Length = 815

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 94/179 (52%), Gaps = 21/179 (11%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           + E  I+  +I QL+  D L+GL N           I+S   ++  ++++F D+D FK +
Sbjct: 640 INERIINREKIYQLAYHDILTGLPNRQLLLDRLNQAIASAKHHHRFMALMFVDLDKFKHV 699

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRK 201
           ND  GH  GDK++  +S +L     +   + R GG+EF       SS Q+AAILA+   K
Sbjct: 700 NDTLGHDAGDKLLKEMSTRLCCSVRSQDTIARTGGDEFVIILTEISSPQDAAILADKFLK 759

Query: 202 II------ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           I+      ++ Q+ I++   I I  + G+         + ++ +AD A+Y++K +GR+R
Sbjct: 760 IVKKPLSLQDQQLQITASIGIAIYPNNGLDA-------AELMKKADMAMYMSKDAGRDR 811


>gi|297584366|ref|YP_003700146.1| GAF sensor-containing diguanylate cyclase [Bacillus
           selenitireducens MLS10]
 gi|297142823|gb|ADH99580.1| diguanylate cyclase with GAF sensor [Bacillus selenitireducens
           MLS10]
          Length = 517

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 95/185 (51%), Gaps = 13/185 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNE------KLSIVFFDID 137
            G++  E  + Y R  +L   D L+ L N   ++ ++    Y +       L+++  D+D
Sbjct: 327 QGAMAIENAVLYERTQELVMTDGLTRLRNKR-YLETITQDLYTDAKLQCIPLAVMMIDLD 385

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           YFK  ND  GH +GD+V+  +++ L  +        R GGEEF     G S+  A  LA 
Sbjct: 386 YFKVYNDTNGHLMGDQVLLQVAEILSDLTPDEGVAIRFGGEEFCVILPGYSKSHALTLAE 445

Query: 198 DLRKII-ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           ++RK I E    +    P   ++ S G++    C +EP  ++I  ADQA+Y +KK+GRNR
Sbjct: 446 NIRKTINEYPFKSRERQPDGALSASIGLSSYPDCIQEP-ESLIETADQAVYASKKNGRNR 504

Query: 255 VVCFS 259
           V  FS
Sbjct: 505 VTVFS 509


>gi|153006978|ref|YP_001381303.1| diguanylate cyclase [Anaeromyxobacter sp. Fw109-5]
 gi|152030551|gb|ABS28319.1| diguanylate cyclase [Anaeromyxobacter sp. Fw109-5]
          Length = 312

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 12/160 (7%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N       L S       +  +LS++  D+D+FK +ND  GH  GD+ +  ++
Sbjct: 140 DPLTGLFNRRHLEERLASELAAAQRHGRELSLLLVDVDFFKAVNDRHGHLAGDEALKMVA 199

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-----NISSGP 214
             L         + R GGEEF   A  +  Q A  LA  +R+ +E S+      ++    
Sbjct: 200 FVLRGAIRKEDVLARYGGEEFIVIARETGLQGARALAERIRRAVERSRCAWHGHDLGLTV 259

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           SI +T+S G+AE         ++  AD+ALY+AK++GRNR
Sbjct: 260 SIGVTVSIGLAEYVPGRSDRELLETADRALYLAKQAGRNR 299


>gi|209549574|ref|YP_002281491.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535330|gb|ACI55265.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 417

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 92/187 (49%), Gaps = 12/187 (6%)

Query: 89  ILKELF-ISYNRIS--QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           IL+EL   + +RI   Q +  D L+  +   AF       IS    +   LS + FDID+
Sbjct: 154 ILQELAGAAMDRIELVQSAATDSLTEAMTRRAFKQEADQLISLALRHQHDLSCIAFDIDH 213

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++ND +GH  GD V+  ++             GR+GGEEFA        + A  +A  
Sbjct: 214 FKKVNDTYGHAAGDAVLKAVASICKATLRAGDLFGRIGGEEFAVILPHVDREGAFAVAEK 273

Query: 199 LRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           LR  I    I    G S+++T S G  A     + I T++ +AD A+Y AK +GRNR V 
Sbjct: 274 LRAAIAAQPIRGDHG-SLNVTASFGTSALSIVSKEIETLLAQADAAMYQAKHAGRNRCVS 332

Query: 258 FSDIENN 264
           +S I  +
Sbjct: 333 WSSIHAD 339


>gi|118593438|ref|ZP_01550818.1| putative kinase/esterase [Stappia aggregata IAM 12614]
 gi|118433917|gb|EAV40575.1| putative kinase/esterase [Stappia aggregata IAM 12614]
          Length = 759

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 103/214 (48%), Gaps = 30/214 (14%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           + PF  L   ++   + V+I++TI       +  + K L  S  R    SR D LSGL N
Sbjct: 278 INPFLALAAFMI---AAVVIAVTI------FTHQMTKRLAHSEARAVHASRHDALSGLPN 328

Query: 115 HSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
            + F + L    E+        ++V+ D+D+FK IND  GH  GDKVI  ++ +L  V  
Sbjct: 329 RARFHTLLTETLEESAAEGTNTAVVYIDLDHFKDINDTLGHSAGDKVITAVAQRLHRVIP 388

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-----PSIHITISA 222
               V R+ G+EF A  + + E +       L  I++  Q  I          +H ++S 
Sbjct: 389 DTGIVARISGDEF-AMVIRNCEDDVW-----LEYILDQVQDEIGRPIMIGRRELHASLSM 442

Query: 223 G--IAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           G  +A R   +P   ++ +AD ALY AK +GRNR
Sbjct: 443 GAAVAPRDGNDP-DELLRKADIALYDAKANGRNR 475


>gi|21107752|gb|AAM36438.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str.
            306]
          Length = 1009

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 8/174 (4%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            +L  L I  +   + +  D L+GL N   F       IS        L +   DID+FK+
Sbjct: 834  LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSARPLVLAILDIDHFKR 893

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            IND++ H  GD V+  +   L           RLGGEEFA     ++  EA  L   +R 
Sbjct: 894  INDHYSHASGDAVLHEVGVLLTAAARASDLPARLGGEEFALLLADTTLDEAQALCLRIRA 953

Query: 202  IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  +++ N  S   + +T SAG+A    ++  S+++ RAD ALY AK +GR+R+
Sbjct: 954  LF-HARHNWGSVEGLQVTFSAGVAALRDEDTGSSLMQRADHALYEAKSAGRDRI 1006


>gi|77748595|ref|NP_641902.2| hypothetical protein XAC1570 [Xanthomonas axonopodis pv. citri str.
            306]
          Length = 1013

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 8/174 (4%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            +L  L I  +   + +  D L+GL N   F       IS        L +   DID+FK+
Sbjct: 838  LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSARPLVLAILDIDHFKR 897

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            IND++ H  GD V+  +   L           RLGGEEFA     ++  EA  L   +R 
Sbjct: 898  INDHYSHASGDAVLHEVGVLLTAAARASDLPARLGGEEFALLLADTTLDEAQALCLRIRA 957

Query: 202  IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  +++ N  S   + +T SAG+A    ++  S+++ RAD ALY AK +GR+R+
Sbjct: 958  LF-HARHNWGSVEGLQVTFSAGVAALRDEDTGSSLMQRADHALYEAKSAGRDRI 1010


>gi|89072919|ref|ZP_01159476.1| hypothetical GGDEF family protein [Photobacterium sp. SKA34]
 gi|89051441|gb|EAR56896.1| hypothetical GGDEF family protein [Photobacterium sp. SKA34]
          Length = 413

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 21/176 (11%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +L+ ID L+ +    A  + L       ++   D+D+FK+ ND +GH  GD V+  ++  
Sbjct: 237 ELAFIDQLTEIPGRRALDNELKHLGRTYTLAMIDVDHFKKFNDKYGHDTGDDVLKLVATL 296

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI----------- 210
           L  + G      R GGEEF     G S  E      +LR+ IE  ++ I           
Sbjct: 297 LKGIDGGGN-AYRYGGEEFTILFKGKSIDECLPFLEELREKIEKYKMIIRDHDKRPTSNR 355

Query: 211 ---------SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                     +  S+ +T+S G+AE   ++    ++  AD ALY AK++GRNRV C
Sbjct: 356 AGSKARGQDKTSKSVKVTVSIGVAENYLEQEPEDVLKHADNALYQAKEAGRNRVQC 411


>gi|327478618|gb|AEA81928.1| GGDEF domain-containing protein [Pseudomonas stutzeri DSM 4166]
          Length = 456

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 68/134 (50%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           N    ++  D+D+FK+IND  GH  GD+++  +   L        +  RLGGEEF    +
Sbjct: 322 NNTFGVLAIDVDHFKRINDTHGHDAGDQILQQVGALLASNTRGGDYAFRLGGEEFLLVLV 381

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
                +A   A  LR+ I      +SSG  + +T+S G+A          ++ +ADQALY
Sbjct: 382 DIDTNKALAAAEKLRERIAREHFRLSSGEVLQVTVSIGMAVHDGHPDYERLLQQADQALY 441

Query: 246 VAKKSGRNRVVCFS 259
            AK  GRNR V ++
Sbjct: 442 QAKHGGRNRCVLYA 455


>gi|326319533|ref|YP_004237205.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323376369|gb|ADX48638.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 407

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 80/179 (44%), Gaps = 14/179 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQIND 144
           +L  +   I +L+  D L+GLLN    +  +     ++S       I   D+D+FK +ND
Sbjct: 213 DLARALEHIRELATHDELTGLLNRRHMLELMRLEQRRVSRSDFPLVIALLDVDHFKAVND 272

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+V+   +  +         + R GGEEF      +  + A  L   +R+ + 
Sbjct: 273 THGHAAGDRVLQAFAQAVRRCVRDGDVISRWGGEEFVLMLCNTPPEAARALLERVREAVA 332

Query: 205 NSQINISSGPS-------IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              +    G         + IT+S G A    + PI   + RAD+ALY AK  GRNR V
Sbjct: 333 ALSVPADRGDGAGASAGHLRITVSIGFALHRPRHPIEETLERADRALYAAKLGGRNRTV 391


>gi|213969908|ref|ZP_03398041.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
 gi|213925233|gb|EEB58795.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
          Length = 553

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 86/170 (50%), Gaps = 11/170 (6%)

Query: 107 DCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L      +  E+  LS++  D D+FK+ ND+FGH  GD+ +  L+
Sbjct: 361 DKLTGLANRRRFDQFLDVEFKRARRERNMLSLILMDADHFKRYNDHFGHLAGDECLVALA 420

Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +      P  V  R GGEE A    G+ E  A  +A ++ + I + QI   + P   +
Sbjct: 421 RLVEQCIRRPGDVAARYGGEEIAVVLPGTDEASARQVAENILQAIRDEQITHPASPFGIV 480

Query: 219 TISAGIAERC-HKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           T+S G+A        IS   +I  AD+ALY AK  GRNRV   S+I  NT
Sbjct: 481 TVSLGVATVVGSNRQISQRGLIELADRALYAAKSQGRNRVNVASEIAFNT 530


>gi|221066436|ref|ZP_03542541.1| diguanylate cyclase [Comamonas testosteroni KF-1]
 gi|220711459|gb|EED66827.1| diguanylate cyclase [Comamonas testosteroni KF-1]
          Length = 405

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 87/159 (54%), Gaps = 15/159 (9%)

Query: 106 IDCLSGLLNHSAFISSLGSY--NEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           +D L+ +LN  AF  +      +++L   +++  DID+FK+INDN+GH  GD+V+  ++ 
Sbjct: 227 LDALTQILNRRAFREAAQHRLSDQRLYPMALLASDIDHFKRINDNWGHDKGDEVLQLVAR 286

Query: 161 QLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +     +   V R GGEEF        L  +EQ A  +  +LR    N Q  + +GP+ 
Sbjct: 287 AMQHNVRSNDLVARFGGEEFMVLLTKIDLQGAEQVATRIGLELR----NDQEVLPNGPA- 341

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +T+S GI    + E +   + +ADQ LY AK +GR+RV
Sbjct: 342 -LTLSFGITSISNAEQLEGALRQADQLLYSAKNAGRDRV 379


>gi|332531374|ref|ZP_08407280.1| diguanylate cyclase [Hylemonella gracilis ATCC 19624]
 gi|332039191|gb|EGI75611.1| diguanylate cyclase [Hylemonella gracilis ATCC 19624]
          Length = 270

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 102/215 (47%), Gaps = 29/215 (13%)

Query: 66  VENLSLVIISITISLL-----LGYISGSILKE-------LFISYNRISQLSRIDCLSGLL 113
           +  LS  I S+T +LL     L  ++ S+ ++       L I+   + +L+ +D L+G+ 
Sbjct: 61  IRELSASIQSMTGALLRHETELETLNASLEQQVHERTEALSIANQELERLATVDGLTGVH 120

Query: 114 NHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N   F +        LG       ++  DID+FK IND  GH  GD+V+  L   L    
Sbjct: 121 NRRRFDARIKEAFQLLGRSERGFGLLLLDIDHFKSINDRHGHQAGDEVLRRLGQLLTQST 180

Query: 167 GTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSI-HITISAGI 224
               FV R GGEEF        +  E   +A  +R  +  +       P++  +T+S G+
Sbjct: 181 RVTDFVARYGGEEFVVLLPECMDPNEGWAVAEKIRAAVAATPF-----PAVGQVTVSVGL 235

Query: 225 AERCHKEPIS--TIIYRADQALYVAKKSGRNRVVC 257
           +   H++  S   +I RADQALY AK  GRNRV+ 
Sbjct: 236 S-LAHRDDASAEAVISRADQALYEAKAQGRNRVLA 269


>gi|328543420|ref|YP_004303529.1| Response regulator containing a chemotaxis protein CheY doma in and
           a GGDEF domain [polymorphum gilvum SL003B-26A1]
 gi|326413165|gb|ADZ70228.1| Response regulator containing a CheY-like receiver doma in and a
           GGDEF domain [Polymorphum gilvum SL003B-26A1]
          Length = 300

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 12/163 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +L+  D L+ L N  AF+ +   +         +S++  DID+FK IND  GH VGD V+
Sbjct: 131 RLATRDPLTELFNRRAFLDAAQKHIRDASDLIPVSVILLDIDHFKAINDAHGHAVGDLVL 190

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +++   ++  +    GRLGGEEFA    G +  +A I A  LR  ++   +   +   
Sbjct: 191 RAVAE---ILARSNELAGRLGGEEFAVIEPGCTATQACIRAEVLRADLQRVDVR-HADAV 246

Query: 216 IHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256
           I +T+S G+AE     ++     +  AD A+Y AK+ GRNRVV
Sbjct: 247 IPVTVSLGVAEVPIGREDAFDYALCLADAAMYEAKRLGRNRVV 289


>gi|294339393|emb|CAZ87749.1| hypothetical protein; PAS and GGDEF domains [Thiomonas sp. 3As]
          Length = 473

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 88/166 (53%), Gaps = 9/166 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQINDNFGHP 149
           ++ R+   +  D L+G+L   A +  L +       ++ L++ F D+D FKQIND  GH 
Sbjct: 292 THARLLHRAERDALTGVLTRRAIMERLDTALARRTRDDMLALCFIDLDGFKQINDRLGHV 351

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+++  ++  +  V      +GR+GG+EF A +  +    A  LA  L ++   +  +
Sbjct: 352 RGDRLLVQVAHAMQDVLRRDDAIGRIGGDEFVALSAVADLSAAQSLAAKLVEVCAAAGYD 411

Query: 210 ISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + SG  + +T S G+ A   H      ++ RAD A+YVAK+ G+NR
Sbjct: 412 LLSG--MRVTASIGVAAAPTHARSSFELLQRADDAMYVAKQQGKNR 455


>gi|156975277|ref|YP_001446184.1| hypothetical protein VIBHAR_03006 [Vibrio harveyi ATCC BAA-1116]
 gi|156526871|gb|ABU71957.1| hypothetical protein VIBHAR_03006 [Vibrio harveyi ATCC BAA-1116]
          Length = 520

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 83/153 (54%), Gaps = 8/153 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GLLN      ++  ++ +    S++  DIDYFK+IND +GH  GD ++A L+  + 
Sbjct: 366 DSLTGLLNRRGIDKAIEDFHSQSIPFSVLALDIDYFKRINDTYGHDTGDILLARLAKLIK 425

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   V R GGEEF      ++  +A  ++  +R+ +E+ + +       ++TIS G
Sbjct: 426 AQARDVDTVCRCGGEEFLVFLRNTNMSQAKCISERIRRSVESHEYDGIG----NVTISIG 481

Query: 224 IAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           IA      E I+ +I  AD ALY AK++GRNR 
Sbjct: 482 IAHWDGEGELINRVIKNADDALYQAKRNGRNRT 514


>gi|86357267|ref|YP_469159.1| response regulator PleD [Rhizobium etli CFN 42]
 gi|86281369|gb|ABC90432.1| two-component response regulator protein [Rhizobium etli CFN 42]
          Length = 457

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 88/176 (50%), Gaps = 11/176 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
            L  S  +  +L+  D L+GL N     + L        +    LS++  DID FKQ+ND
Sbjct: 280 RLRASVKQTIELAVTDPLTGLYNRRYLDNHLNVLFNRSMARGRPLSVLITDIDRFKQVND 339

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+   ++++           R GGEEF      +S + AA +A  LR  +E
Sbjct: 340 TYGHDGGDEVLREFANRVRSTIRGADLACRYGGEEFVVVMPDTSPEVAAAVAERLRAAVE 399

Query: 205 NSQINIS-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++   +  S  ++ +T S GIA R      P   ++ +AD ALY AK +GRNRVV 
Sbjct: 400 SAPFMLKRSSEALSVTASFGIASRIGAVLTP-DQLMKQADLALYEAKNTGRNRVVA 454


>gi|77458016|ref|YP_347521.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas fluorescens
           Pf0-1]
 gi|77382019|gb|ABA73532.1| putative GGDEF domain regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 794

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 14/206 (6%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           P  GL ++  E     +    + L  GYIS   + +L      +  LS  D L+G+ N  
Sbjct: 591 PERGLRWVRGEATPEELPGGGV-LWHGYISD--ISDLKRVEEELRALSVTDSLTGIHNRR 647

Query: 117 AFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            F   L +   +       LS++  DID+FK+IND +GH VGD+V+  + +++       
Sbjct: 648 YFQERLTTEMARVERGGGELSVIMLDIDHFKRINDQYGHAVGDRVLQAVCERIGHRLRRT 707

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               RLGGEEF           A +LA +L   + ++ I++       +T S GIA    
Sbjct: 708 DVFCRLGGEEFMVLCPDIDGDHAHMLAEELWHSLRSAPIDVVGV----VTASFGIASWRP 763

Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255
            E    ++ RAD  +Y AK+ GR+RV
Sbjct: 764 GEGADALLLRADSGVYAAKQGGRDRV 789


>gi|238797835|ref|ZP_04641328.1| Diguanylate cyclase [Yersinia mollaretii ATCC 43969]
 gi|238718363|gb|EEQ10186.1| Diguanylate cyclase [Yersinia mollaretii ATCC 43969]
          Length = 372

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 4/170 (2%)

Query: 91  KELFI-SYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           KE +I +Y  +   + ID L+ L N ++    ++++ S  +   ++  D+D+FK +ND +
Sbjct: 180 KERYIYAYFAMKNRANIDKLTQLNNRASVDYRLNTIHSSRQACGLMILDLDHFKLVNDTY 239

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD ++  +   L        FVGR GGEEF         Q    +A  + + +EN 
Sbjct: 240 GHDGGDLLLTEVGKLLTSSVRDEDFVGRFGGEEFIVITHSHDPQTIKTVAERICQRVENL 299

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            + +  G  +  TIS G +       +   +   D+ALY AKK GRN+VV
Sbjct: 300 NVELPDGRKVKTTISIGASLYLPGMSMLKAMKMTDEALYQAKKQGRNQVV 349


>gi|296272790|ref|YP_003655421.1| chase2 sensor-containing diguanylate cyclase [Arcobacter
           nitrofigilis DSM 7299]
 gi|296096964|gb|ADG92914.1| diguanylate cyclase with Chase2 sensor [Arcobacter nitrofigilis DSM
           7299]
          Length = 589

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 122/260 (46%), Gaps = 41/260 (15%)

Query: 29  IYFSIFFS---------IFIATVI-FIANIFLFYIGLTPFYGLEYILVENLSLVIISITI 78
           + FS++FS         +F  T++ F+  I   +I L  FY     L  NL   I++I  
Sbjct: 342 VLFSLYFSSRKNIYKKGVFTVTLLAFVMTIVYGFISLKFFY-----LQSNLFFSILTIIF 396

Query: 79  SLLLGYIS---------GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129
           S++   I+           ++KE    YN     +  D L+GLLN   F      Y E  
Sbjct: 397 SIVFTVINHQSSLSKYNQRLIKETKKLYNE----ANCDSLTGLLNRRGFDEQYIKYKEIT 452

Query: 130 SIVFF--------DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEF 180
            +  F        D+D+FK++ND +GH +GD V+   + +L+  +   + V  R GGEEF
Sbjct: 453 QLKSFQSTCLAVMDLDFFKRVNDTYGHDIGDLVLQKFA-KLLKEYSRDIDVPARWGGEEF 511

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYR 239
                 ++  E+ I+ N +R++     I    G  + IT+S G+       + I + + +
Sbjct: 512 VILLRNTTIDESIIILNRIRELCMEMDIKTPQGI-LKITVSTGVTVIEDFSKTIDSYVKK 570

Query: 240 ADQALYVAKKSGRNRVVCFS 259
           AD  LY AK++GRNR VC S
Sbjct: 571 ADIGLYQAKEAGRNR-VCIS 589


>gi|239947824|ref|ZP_04699577.1| regulatory component of sensory transduction system [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239922100|gb|EER22124.1| regulatory component of sensory transduction system [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 450

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 78/162 (48%), Gaps = 8/162 (4%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N   F       I      + KL ++  DID FK +ND +GH  GDKV+
Sbjct: 287 LAAKDGLTGLFNRRYFDIHLKQMIEKANKESIKLYLLMCDIDNFKHVNDTYGHQAGDKVL 346

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-P 214
             +S  L         + R GGEEF          +A   A  +R  IE    +I     
Sbjct: 347 TIVSRILKNTLRITDLIARFGGEEFIILLTDIDISKAIETAERVRVKIECMDFHIEDQIE 406

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  TIS G+ E   +E I + I RAD+A+Y AK +G+N+VV
Sbjct: 407 PLKKTISIGVTEYKKEESIESFIERADKAMYEAKTTGKNKVV 448


>gi|254504372|ref|ZP_05116523.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
 gi|222440443|gb|EEE47122.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
          Length = 365

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 90/170 (52%), Gaps = 17/170 (10%)

Query: 106 IDCLSGLLNHSAFISSLGSYNEKL-----------SIVFFDIDYFKQINDNFGHPVGDKV 154
           ID L+ L N   F +SL    EK+           +++  DID+FK+ ND +GH  GD+V
Sbjct: 191 IDELTTLNNRKHFDNSL----EKVIRNSIESGRGFALLMTDIDHFKKFNDTYGHQTGDQV 246

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-IIENSQINISSG 213
           +  ++  +     +     R GGEEFA     ++  EA  +A  +R  ++    +  S+G
Sbjct: 247 LRLVALSVKQNISSQDVACRYGGEEFAIILPHAALDEAVEVAEKIRAAVMAKELVKRSTG 306

Query: 214 PSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            ++  ITISAG+A     +   TI+ RAD+A+Y AK +GRN V   +D+E
Sbjct: 307 ENLGRITISAGVAAYNPDDNEHTIVSRADEAMYAAKNAGRNLVKTENDLE 356


>gi|89095101|ref|ZP_01168028.1| GGDEF family protein [Oceanospirillum sp. MED92]
 gi|89080662|gb|EAR59907.1| GGDEF family protein [Oceanospirillum sp. MED92]
          Length = 329

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 80/169 (47%), Gaps = 21/169 (12%)

Query: 107 DCLSGLLNHSAFISSLGSY----NE-----------KLSIVFFDIDYFKQINDNFGHPVG 151
           D L+GL N  AF   + +     NE                  DID+FKQ+ND++GH  G
Sbjct: 145 DALTGLSNRQAFDQQINNLLFENNEIKRRSSDCELNNWCFALLDIDHFKQVNDDYGHLFG 204

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+   S  +   F     + R GGEEFA A    S + A  + +  R ++ N++    
Sbjct: 205 DEVLLIFSQLMQKTFRDGDLLFRYGGEEFAVALKDVSLESAVKVLDRFRNVVSNAEF--- 261

Query: 212 SGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             P +  +T+S G+           +I RADQALY AK+ GRN+V  F 
Sbjct: 262 --PQLGQVTVSIGVTSIEDGLSTPLLIDRADQALYFAKEHGRNQVHSFE 308


>gi|293610320|ref|ZP_06692621.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827552|gb|EFF85916.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 627

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 95/177 (53%), Gaps = 12/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +   ++ LS  D L+ L N           +S     ++K++ ++ D+D FK +ND
Sbjct: 246 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSDHRYKDQKIAFLYIDLDRFKSVND 305

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH VGD+++  ++++L         + R+GG+EF   A  ++  EA ILA  + ++I+
Sbjct: 306 AFGHHVGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLIAENTNADEAVILAEKVLQLIQ 365

Query: 205 NS-QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            S QI   SG  I+I+ S G+A    H + +  ++  AD A+ ++K+ GRN    FS
Sbjct: 366 ESYQI---SGKEINISASLGVALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTIFS 419


>gi|148975465|ref|ZP_01812336.1| sensory box/GGDEF family protein [Vibrionales bacterium SWAT-3]
 gi|145964893|gb|EDK30144.1| sensory box/GGDEF family protein [Vibrionales bacterium SWAT-3]
          Length = 634

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 84/175 (48%), Gaps = 20/175 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSY--NEKLSIVFFDIDYFKQINDNFGH 148
           N++  LS  D L+G  N   F        S +  Y   E   +   DID+FK+IND FGH
Sbjct: 465 NKLRNLSEKDALAGCWNRRKFDLELRDECSRINRYPTREHSCLAILDIDHFKRINDRFGH 524

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+VI  ++  L        FV R+GGEEF      ++ +EA  + N LR       I
Sbjct: 525 DYGDRVIQTVAQVLQRECRETDFVARIGGEEFGVILPHTTTEEADYVLNRLR-------I 577

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDIE 262
            +S      +T+SAGI        ++   Y+ AD ALY AK +GR+ V  F D E
Sbjct: 578 AVSLELDSVVTVSAGITNLTSDPALN---YKCADLALYEAKAAGRDSVCLFLDTE 629


>gi|157164317|ref|YP_001467178.1| threonine dehydratase [Campylobacter concisus 13826]
 gi|112801352|gb|EAT98696.1| diguanylate cyclase [Campylobacter concisus 13826]
          Length = 418

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 10/172 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           E   + N+I+  +  D L+G  N   F   +  Y       +E  +    DID+FK+IND
Sbjct: 245 EAMENINKIANFANRDFLTGAYNRRFFYQDIEEYVQAAEELDEPYAFAMLDIDHFKKIND 304

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GDK++  L+  L         V R GGEEF       +++EA     +LR  + 
Sbjct: 305 TYGHDGGDKILKSLAKILTDNTKGRDVVARFGGEEFCVVLKKIAKEEAIKFFVNLRAKVA 364

Query: 205 NSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +++ I     + +T+S GI+  + H E I  ++   D ALYVAK++GRNRV
Sbjct: 365 ENEV-IIKDKIVRVTVSIGISFGKGHCE-IDDMLEACDSALYVAKENGRNRV 414


>gi|300713176|ref|YP_003739215.1| diguanylate cyclase [Erwinia billingiae Eb661]
 gi|299060247|emb|CAX53497.1| diguanylate cyclase [Erwinia billingiae Eb661]
          Length = 529

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 85/166 (51%), Gaps = 11/166 (6%)

Query: 98  NRISQLS---RIDCLSGLLNHSAFISSLGSYNEKLS--IVFFDIDYFKQINDNFGHPVGD 152
           N++S L+   R D L+GLLN   F + +  +    S   +  DID+FK+IND  GH  GD
Sbjct: 353 NQVSSLTDETRTDPLTGLLNRRGFTTFIRQHARTHSHCAIAVDIDHFKKINDRLGHDAGD 412

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  L+  L     +   V R GGEEF      +   +AA  A  +R ++E S    + 
Sbjct: 413 AVLISLAGLLRSACRSSDIVSRSGGEEFVIFLPDTQLPDAAATAERIRHLVETSVFPYAG 472

Query: 213 GPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256
                IT+SAG+A     +  ST  +  +AD ALY AK +GRN V+
Sbjct: 473 ----QITVSAGVAALIDVQGSSTEGLFRQADMALYEAKGAGRNIVI 514


>gi|238761920|ref|ZP_04622894.1| Diguanylate cyclase [Yersinia kristensenii ATCC 33638]
 gi|238700034|gb|EEP92777.1| Diguanylate cyclase [Yersinia kristensenii ATCC 33638]
          Length = 409

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 90/166 (54%), Gaps = 14/166 (8%)

Query: 107 DCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N + F   L         N+  +++F D D+FK+INDN+GH  GD V+  ++D
Sbjct: 228 DSLTGLANRAFFEGRLNRIINDCKTNQHAAVLFLDGDHFKEINDNYGHAAGDVVLTSIAD 287

Query: 161 QLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +L  +      V RLGG+EFA   A +  ++ +   +AN++ K + +  I +S G  I  
Sbjct: 288 RLRALLRESDLVARLGGDEFAILLAPIHDTD-DVLTIANNIIKSMTHP-IVLSDGQEITT 345

Query: 219 TISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR---NRVVCFSD 260
           ++S G+A    H +    ++ RAD+A+Y AKK  R     +V  SD
Sbjct: 346 SLSIGVAIYPDHAQTPDELLQRADEAMYQAKKGFRLYEQSIVYLSD 391


>gi|254465870|ref|ZP_05079281.1| sensory transduction histidine kinase [Rhodobacterales bacterium
           Y4I]
 gi|206686778|gb|EDZ47260.1| sensory transduction histidine kinase [Rhodobacterales bacterium
           Y4I]
          Length = 600

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 76/157 (48%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N          F+SS      +LS++  D+D+FK+ NDN GH  GD V+  +S
Sbjct: 409 DPLTGLFNRRHMTESLRKFLSSSALNCARLSVIAVDVDHFKKFNDNHGHDAGDMVLRAVS 468

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L           R GGEEF     G + ++A   A  LR+ +E   +         IT
Sbjct: 469 TVLDKACDGSEAACRPGGEEFTVILPGVTPEDALTRAELLRQAVEEITVRYGEKTLPQIT 528

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ISAG+A    H      ++  AD+ALY AK  GRN+V
Sbjct: 529 ISAGVAHYPSHGLLPQDLLRAADEALYAAKAKGRNQV 565


>gi|160899475|ref|YP_001565057.1| diguanylate cyclase [Delftia acidovorans SPH-1]
 gi|160365059|gb|ABX36672.1| diguanylate cyclase [Delftia acidovorans SPH-1]
          Length = 282

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 81/167 (48%), Gaps = 9/167 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           + +  LS  D L+GL N   F       I  +    E   ++  DID+FKQIND  GH V
Sbjct: 69  DELCSLSLRDPLTGLANRRHFRTIAEREIDRVARSGEAALMLMLDIDHFKQINDQHGHIV 128

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  ++  L         + R GGEEFA             +A  +R  IE   + I
Sbjct: 129 GDRVLQSVARTLTNCVRPMDTLARYGGEEFAIVLPACPATFGLSVAERIRSAIERMPVVI 188

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRV 255
           S   ++ ITIS G A        +T ++  RAD+ LY+AK +GRNRV
Sbjct: 189 SPTLTLQITISIGGAYALQWIRSTTTLWTERADKQLYLAKSAGRNRV 235


>gi|89894478|ref|YP_517965.1| hypothetical protein DSY1732 [Desulfitobacterium hafniense Y51]
 gi|89333926|dbj|BAE83521.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 540

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 85/168 (50%), Gaps = 11/168 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVG 151
           SYNR     R+     L+N    + + G  +EK      ++ FDIDYFK  NDN GH  G
Sbjct: 374 SYNRYFFDERLQQEIDLVNR---LQAYGLESEKSVNNFGLIMFDIDYFKNYNDNNGHLAG 430

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  +   +  V      + R GGEEFA     +SE+   I A  +RK +E+      
Sbjct: 431 DELLQTIVTVVKGVLYPTDILCRYGGEEFAVICCHTSEKGFEIAAEKIRKAVEDYDFRFQ 490

Query: 212 SG-PSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256
              P  ++T+S G A  C    ++   +I RAD  LY+AK +GRN+VV
Sbjct: 491 DKQPGGNLTVSIG-AAYCSTPNVNKKDLITRADNYLYLAKSTGRNKVV 537


>gi|325295303|ref|YP_004281817.1| diguanylate cyclase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065751|gb|ADY73758.1| diguanylate cyclase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 361

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 8/184 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           S   +K+L        + + ID L+ + N ++F  ++          N   +++  DID 
Sbjct: 176 SNQQIKKLRKELEESKKEANIDFLTRVANRASFDRAISDMVKDFYERNYPFALLMIDIDN 235

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQIND +GH  GD V+  L+  +         V R GGEEFA    G +  +A  +A  
Sbjct: 236 FKQINDTYGHQAGDHVLRELARTIKEQLRARDVVARYGGEEFAILIPGVTFAQAVRIAER 295

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +RK IE           I +T S G+A   +    + II +ADQALY+AK++G+N++   
Sbjct: 296 IRKNIEKHLFRYKD-TVIPVTASIGVAVMRNGLDETGIIEKADQALYLAKRNGKNQIKTD 354

Query: 259 SDIE 262
            D+E
Sbjct: 355 LDVE 358


>gi|299532454|ref|ZP_07045845.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298719539|gb|EFI60505.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 400

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 118/253 (46%), Gaps = 30/253 (11%)

Query: 28  MIYFSIFFSIFI----ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           +++ SI F+ +     A +  +    L  +  +P++ L  + + N SL+   +  ++ + 
Sbjct: 154 LLWLSILFTAYTFTRPALIWLLGYTDLRALPRSPYWILTLLSILNFSLLFTVVMAAIAVK 213

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136
              G + KE             ID L+ +LN  +F       ++ +  Y   ++++  DI
Sbjct: 214 ETVGKLRKE-----------RDIDALTQILNRRSFHEHAQKRLADMRRY--PMAVLACDI 260

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND +GH  GD V+  ++  L         V R GGEEF       + ++A ++A
Sbjct: 261 DHFKRINDTWGHERGDMVLQLVASTLQNNVREHDLVARFGGEEFVLLLADITLEDAELIA 320

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV- 255
             +++ + +    + +GP   +T+S GI+           +  AD+ LY AK +GR+RV 
Sbjct: 321 QRIQRDLGSRNTVLPTGPK--LTMSFGISLITRSFQFEQAMKEADRLLYQAKNAGRDRVH 378

Query: 256 ---VCFSDIENNT 265
              V + DI   T
Sbjct: 379 VSGVSYPDISVET 391


>gi|238650401|ref|YP_002916253.1| response regulator PleD [Rickettsia peacockii str. Rustic]
 gi|238624499|gb|ACR47205.1| response regulator PleD [Rickettsia peacockii str. Rustic]
          Length = 450

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 76/158 (48%), Gaps = 8/158 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F       I      + KL ++  DID FK +ND +GH  GDKV+  +S
Sbjct: 291 DGLTGLFNRRYFDIHLKQIIEKTNKESIKLYLLMCDIDNFKHVNDTYGHQAGDKVLTIVS 350

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHI 218
             L         + R GGEEF          +A   A  +R  IE    +I      +  
Sbjct: 351 RILKNTLRVTDLIARFGGEEFTILLTDIDISKAIETAERVRIKIEYMNFHIEDQIEPLKT 410

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           TIS G+ +   +E I + I RAD+A+Y AK +G+N+VV
Sbjct: 411 TISIGVTKYKKEESIESFIERADKAMYEAKTTGKNKVV 448


>gi|86147986|ref|ZP_01066289.1| GGDEF domain protein [Vibrio sp. MED222]
 gi|85834210|gb|EAQ52365.1| GGDEF domain protein [Vibrio sp. MED222]
          Length = 426

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 74/156 (47%), Gaps = 10/156 (6%)

Query: 107 DCLSGLLNHSAFISS------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+G  N +  + +      L    + + I  FD+D+FKQIND  GH VGDKV+     
Sbjct: 272 DPLTGCRNRTEALDAFYDFEWLAQQGKTIHIALFDLDHFKQINDQHGHEVGDKVLIQFVA 331

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
                 G    + R GGEEF    L  +  +     N+L   I  S        ++ +T 
Sbjct: 332 TANESLGEQYLLYRWGGEEFLLVCLEQTSLQCNEAINNLYLAIGQS----VWPKALKVTT 387

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S G+ +    E I + I RAD+ALY AK +GRN+V 
Sbjct: 388 STGVTQLKQHESIRSAIKRADKALYQAKDNGRNQVA 423


>gi|119775552|ref|YP_928292.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B]
 gi|119768052|gb|ABM00623.1| diguanylate cyclase [Shewanella amazonensis SB2B]
          Length = 518

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 77/163 (47%), Gaps = 8/163 (4%)

Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +L+ +D L+ L N +A          S   +   L +   DID+FK INDNFGH  GDK
Sbjct: 354 QKLNLLDTLTQLPNRAALEERMEQEFRSFQRHKHPLWVAVADIDHFKSINDNFGHSTGDK 413

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  ++  L        FV R GGEEF       S+ +   L N +R+ ++N      + 
Sbjct: 414 TLQVIAMALKNSLRDTEFVARYGGEEFVLLIPEVSDTDIVQLLNRVREKVKNIPFKFKNQ 473

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I +T+S G A     E I     RAD ALY AK   R+RV+
Sbjct: 474 -RITVTVSIGAARVMDNELIHETFERADAALYKAKHESRDRVI 515


>gi|300871834|ref|YP_003786707.1| GGDEF domain-containing protein [Brachyspira pilosicoli 95/1000]
 gi|300689535|gb|ADK32206.1| GGDEF domain protein [Brachyspira pilosicoli 95/1000]
          Length = 346

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 110/228 (48%), Gaps = 22/228 (9%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR-----ISQLSR 105
           F IG+   Y L  I+   L L I +I +S+    +  SI K+ FI   +     +++ S 
Sbjct: 117 FPIGIVDIYTLYDII---LKLKIRNIRLSVDNIELESSIEKDRFIKELKKEIDILNEQSI 173

Query: 106 IDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVI--- 155
           ID ++ L N   F   +    E+       +S++F D+D+FK +ND +GH  G+ V+   
Sbjct: 174 IDHITNLYNIRYFYKVIEEEAERAKRYKYTISLIFMDLDHFKNVNDIYGHDCGNLVLHEI 233

Query: 156 -AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
              L+     +        R GGEEF      +++ EA  +   +R+ +EN   N  S  
Sbjct: 234 GRLLTSSSDNILRRSDISFRYGGEEFIIICPNTNKDEAFTVGERIRRTVENKVFNYES-Q 292

Query: 215 SIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            I ITIS GI+E  H  K  I   +  +D A+Y AK  GRN+V+ + +
Sbjct: 293 DIKITISIGISEYRHNSKTSIFQSVKESDMAMYEAKHQGRNKVIIYDE 340


>gi|296106460|ref|YP_003618160.1| hypothetical protein lpa_01327 [Legionella pneumophila 2300/99
           Alcoy]
 gi|295648361|gb|ADG24208.1| hypothetical protein lpa_01327 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 377

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 92/183 (50%), Gaps = 19/183 (10%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEK------LSIVFFDIDYFKQIN 143
           KEL I  N +  +S  D LSGL N   F +     +N        LS+V  DID FK IN
Sbjct: 194 KELLI--NELKVMSITDSLSGLYNRRYFDNIFPQEFNRARRNQYFLSLVSIDIDNFKLIN 251

Query: 144 DNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DN GHP GDKV+  ++D L  +F  +   + RLGG+EFA        +E   +   ++  
Sbjct: 252 DNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKETISICKAIKNP 311

Query: 203 IENSQINISSGPS-----IHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNR 254
            +   +N +   +      H+T+S GIA   H E    I   I  AD+ALY AKK G+N+
Sbjct: 312 FKTENLNHTYDSNEQLLMSHVTLSIGIA-YIHFESSVSIEHAITAADKALYQAKKKGKNQ 370

Query: 255 VVC 257
           +V 
Sbjct: 371 IVV 373


>gi|254457269|ref|ZP_05070697.1| GGDEF domain/pas/pac sensor domain protein [Campylobacterales
           bacterium GD 1]
 gi|207086061|gb|EDZ63345.1| GGDEF domain/pas/pac sensor domain protein [Campylobacterales
           bacterium GD 1]
          Length = 428

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ + N + F   ++S+  +  K      I+  DID+FK IND +GH VGD+ +  ++
Sbjct: 273 DPLTQIYNRTYFDELMTSIALHQRKADTNFIILITDIDHFKSINDTYGHQVGDEALKDVA 332

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +         V R GGEEF      +   EA ++A  LR  IE ++I       I IT
Sbjct: 333 RVIKDSLRENDVVARWGGEEFVIMLKNTELDEAQMIAEKLRANIEKTKIQ----NVIDIT 388

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            S G+ +    E  +    RAD ALY AK+SGRN VV 
Sbjct: 389 TSIGLTKYYVGEDTNLTFKRADNALYKAKESGRNMVVT 426


>gi|146280403|ref|YP_001170556.1| GGDEF domain-containing protein [Pseudomonas stutzeri A1501]
 gi|145568608|gb|ABP77714.1| GGDEF domain protein [Pseudomonas stutzeri A1501]
          Length = 456

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 68/134 (50%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           N    ++  D+D+FK+IND  GH  GD+++  +   L        +  RLGGEEF    +
Sbjct: 322 NNTFGVLAIDVDHFKRINDTHGHDAGDQILQQVGALLASNTRGGDYAFRLGGEEFLLVLV 381

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
                +A   A  LR+ I      +SSG  + +T+S G+A          ++ +ADQALY
Sbjct: 382 DIDTNKALAAAEKLRERIAREHFRLSSGEVLQVTVSIGMAVHDGHPDYERLLQQADQALY 441

Query: 246 VAKKSGRNRVVCFS 259
            AK  GRNR V ++
Sbjct: 442 QAKHGGRNRCVLYA 455


>gi|194365004|ref|YP_002027614.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Stenotrophomonas maltophilia R551-3]
 gi|194347808|gb|ACF50931.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Stenotrophomonas maltophilia R551-3]
          Length = 807

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 48/135 (35%), Positives = 79/135 (58%), Gaps = 8/135 (5%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S+ + ++D+FK +ND+FGH  GD+++   +D LV       +VGRLG +EFA     + +
Sbjct: 400 SLCYINLDHFKLVNDSFGHAAGDQMLRSFADYLVAAVRDGDWVGRLGADEFAVFLAHAGQ 459

Query: 190 QEAAILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALY 245
            EA  +   L+++I N   +   IS G S  ++ S G+ E   + P +  ++  AD A Y
Sbjct: 460 DEAKRV---LQRVIRNLGQATFPISEG-SPQLSCSIGVVEVNAEAPDANWLMSAADSACY 515

Query: 246 VAKKSGRNRVVCFSD 260
            AK++GRNRV CF++
Sbjct: 516 AAKQAGRNRVHCFNE 530


>gi|86357221|ref|YP_469113.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|86281323|gb|ABC90386.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
          Length = 708

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 84/163 (51%), Gaps = 22/163 (13%)

Query: 107 DCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D LSGLLN    ++ L    GS      +   D+D FK +ND +GH VGD +I  +S+ L
Sbjct: 297 DSLSGLLNRHGLLAMLEELEGSEGAPPRLYLVDLDGFKAVNDAWGHAVGDDLIRIVSNAL 356

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------SI 216
           +      + V RLGG+EFA   +G +           R+ IE + + + +GP      +I
Sbjct: 357 IACHREVVAVARLGGDEFALVQVGIA----------ARQEIEETILALFAGPFKIDGRTI 406

Query: 217 HITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +  S G A R    EP+  ++ RAD ALY AK++G+ R + +
Sbjct: 407 EVGASIGAAARDADIEPLE-LLRRADMALYRAKENGKGRAIEY 448


>gi|238790066|ref|ZP_04633844.1| Predicted diguanylate cyclase [Yersinia frederiksenii ATCC 33641]
 gi|238721879|gb|EEQ13541.1| Predicted diguanylate cyclase [Yersinia frederiksenii ATCC 33641]
          Length = 366

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 7/176 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQ 141
           +  ++  L+    + S LS ID L+GL N     + L +   +      ++  DID+FK 
Sbjct: 178 TRKLVARLYNEREKFSDLSMIDPLTGLYNRRGLENKLETLLAQSPGNHYVLLLDIDHFKA 237

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            NDN+GH +GD+ +  ++  +     +   V R GGEEF       SE+ A+ LA  +R+
Sbjct: 238 YNDNYGHTMGDQALVRVAAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYASQLAERVRQ 297

Query: 202 IIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +    I    +   S  +T+SAGI+     + +S+ +  AD+ALY AKK+GRN+V
Sbjct: 298 RVLGLDIPHVFNHKVSTTVTLSAGISPLQSYDLVSS-LKAADEALYRAKKNGRNKV 352


>gi|325568971|ref|ZP_08145264.1| YaiC/YhcK/ArdA family protein [Enterococcus casseliflavus ATCC
           12755]
 gi|325158009|gb|EGC70165.1| YaiC/YhcK/ArdA family protein [Enterococcus casseliflavus ATCC
           12755]
          Length = 369

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 90/170 (52%), Gaps = 12/170 (7%)

Query: 97  YNRISQL--SRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           Y  +++L  S+ID L+G  N+  +   L    S  + ++I   D+D+FK++ND +GH  G
Sbjct: 195 YQVLAELANSKIDALTGCFNYGTYNHDLLQAVSQKKTVTIAMIDLDHFKKVNDRYGHIAG 254

Query: 152 DKVIAFLSDQ----LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           ++++   + +    L   F       R GGEEF     G  ++        L + I +S 
Sbjct: 255 NELLRTFASRTTTFLEAHFAETYSFYRYGGEEFCLVIEGDVKERTVAAMTTLCQTISSSM 314

Query: 208 INISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +++     +++S G+  +  CH + ++ +  RADQALY+AK+SGRNRV
Sbjct: 315 FPVANFEKGTMSLSCGVEASTVCHGDILAAV-ERADQALYLAKQSGRNRV 363


>gi|149188405|ref|ZP_01866698.1| putative GGDEF family protein [Vibrio shilonii AK1]
 gi|148837623|gb|EDL54567.1| putative GGDEF family protein [Vibrio shilonii AK1]
          Length = 244

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 4/164 (2%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGDKVI 155
           ++ + S  D L+ + N   F S+L +  +  +   ++  DIDYFK++ND +GH  GD  +
Sbjct: 82  KLRKQSESDPLTQIANRRYFFSTLATITKSTTPHCLLLMDIDYFKKVNDTYGHLAGDNTL 141

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +  ++  +        R+GGEEFA       E  A  +A  +R  I ++  +     +
Sbjct: 142 KEVVARIQDIIRPDDTFARVGGEEFALLLPDIEEHTAYEIAERIRCTIADTPFHYEQQ-T 200

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             IT+S GI +  ++E  + I  RAD ALY+AK  GRN+ +  S
Sbjct: 201 FSITLSVGITQARYQERNNHIFSRADDALYIAKSRGRNQSMVLS 244


>gi|330720750|gb|EGG98973.1| hypothetical protein imdm_1668 [gamma proteobacterium IMCC2047]
          Length = 434

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 91/173 (52%), Gaps = 16/173 (9%)

Query: 96  SYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S+  +   +  D L+GL N        S    +    N  L     DID+FK+INDN GH
Sbjct: 251 SFEHLKNAANKDFLTGLHNRKYLFDAGSKLFENACRENISLMAAMIDIDHFKEINDNHGH 310

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILANDLRKII 203
            +GD+ +  ++ +L  +      + R+GGEEF      A +  +SE++  +LAN L  ++
Sbjct: 311 QIGDRALQHIASKLKQLLRGTDIIARVGGEEFCLLCVNAGSGATSERD--LLAN-LCDVV 367

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + S ++++   SI +TIS G       + +  ++  AD ALY AK+SGRN+VV
Sbjct: 368 QYSPLDVNDFLSITLTISIGYTTEI-PDTLEEMVNNADAALYRAKQSGRNKVV 419


>gi|329912972|ref|ZP_08275854.1| putative GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327545470|gb|EGF30674.1| putative GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 781

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 92/175 (52%), Gaps = 10/175 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEKLSIVFF-DIDYFK 140
           +++++L     R  QL+ +D L+G+ N   F             + KL+ VFF D+D FK
Sbjct: 334 TLIQQLETEKTRAFQLASLDFLTGIPNRMKFYELAEIELVRARRSRKLTAVFFLDLDKFK 393

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND  GH VGD ++  ++ +L           RLGG+EFA    G  S+   A +AN L
Sbjct: 394 AINDTHGHGVGDLLLQQVASRLRHSLRGYDLAARLGGDEFAVLVSGLDSDDAVATVANKL 453

Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
              +  + +++  G  + +T S GIA      E I T++ RAD+A+Y+AK+SGR 
Sbjct: 454 VASLSATYLDL-DGHDLDVTPSIGIALYPGDGEEIDTLLSRADRAMYLAKQSGRG 507


>gi|116873347|ref|YP_850128.1| GGDEF domain-containing protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116742225|emb|CAK21349.1| GGDEF domain protein [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 375

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 97/188 (51%), Gaps = 15/188 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +LL+ Y    I K   +  N +++ +  D L+ L N   F    G          + LS+
Sbjct: 184 ALLVFYACNYIDKSNLVIQN-LTETAMTDSLTNLPNMRFFTQQFGWIFNKAQKRKKALSL 242

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ 190
              DID+FK+IND  GH  G+ V+A  S  L    F       R+GGEEFA        +
Sbjct: 243 FIIDIDHFKEINDFHGHQAGNTVLAQFSTILKNRTFPPRTMFARIGGEEFAVLLQNVGTE 302

Query: 191 EAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVA 247
           +AA++A+ LR+ IE ++   N +SG   ++T+S G+A        +  ++  ADQALY A
Sbjct: 303 QAALIADFLREEIERAKFPYNPASG---NVTVSIGVAATNGNFATTESLFEAADQALYQA 359

Query: 248 KKSGRNRV 255
           K++GRN++
Sbjct: 360 KQNGRNQI 367


>gi|294339813|emb|CAZ88176.1| putative GGDEF family protein, diguanylate cyclase domain
           [Thiomonas sp. 3As]
          Length = 546

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 8/166 (4%)

Query: 98  NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++SQ  + D L+G LN        +   S +    + L++   D+D+FK +ND  GH  
Sbjct: 354 EQVSQQLQEDPLTGALNRRGLDAEFTRMQSRVVRQGQPLTLALLDLDHFKAVNDTHGHDT 413

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQIN 209
           GD V+  L  Q   +      V R+GGEEF      +  Q++ ++   L     + + + 
Sbjct: 414 GDAVLKALVAQAKRLIRPSDRVARMGGEEFMLLLPDTPVQQSLVVVQRLLVAFSDQTLVQ 473

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S+G  I ++ SAG+AE C  E  + I  R D AL  AK++GR RV
Sbjct: 474 DSTGRRIPLSFSAGVAELCPDEDFAAIYQRVDAALLQAKQAGRKRV 519


>gi|256827837|ref|YP_003156565.1| response regulator receiver modulated diguanylate cyclase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256577013|gb|ACU88149.1| response regulator receiver modulated diguanylate cyclase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 341

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 87/179 (48%), Gaps = 17/179 (9%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL     ++  LS +D L+G+ N   F        S +      LS++  D+D+FK  ND
Sbjct: 152 ELEEKNRQLQLLSSLDGLTGIPNRRQFDEMLSLEWSRMAREKTPLSLIILDVDHFKLFND 211

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  L  +   P   V R GGEEFAA   G+S + A ++A  +R+ +
Sbjct: 212 RYGHLAGDSCLRRVALALATMLRRPADMVARYGGEEFAAILPGTSLEGAQVVAESMRQTV 271

Query: 204 ENSQINISSGPSIHI-TISAGIAERCHKEPI-----STIIYRADQALYVAKKSGRNRVV 256
               I     P   + T+S G++      PI     + +I  ADQ LY AK+ GR+R V
Sbjct: 272 TELAIEHLDSPVRGVLTVSLGVSSVI---PIPGCIPADLIQAADQGLYQAKQEGRDRWV 327


>gi|251790234|ref|YP_003004955.1| diguanylate cyclase [Dickeya zeae Ech1591]
 gi|247538855|gb|ACT07476.1| diguanylate cyclase [Dickeya zeae Ech1591]
          Length = 470

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 9/159 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           LSR      L  H     S+ S ++ ++I+  DID+FK IND+FGH  GD+++  ++  +
Sbjct: 315 LSRYGFTEALTTHG---QSVKSQHDAVNIMLIDIDHFKNINDSFGHDCGDEILRQVAKVI 371

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                    V R+GGEEFA      +      LA+ LR+ I+ +    +  P + +T+S 
Sbjct: 372 QQAVSAQGLVSRIGGEEFAVVCFNYNPSAFYRLADSLRQTIQQTVFLFNQQP-VPVTVSI 430

Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNRVV 256
           GIA          + +  +   AD+ LY AK+ GRNR +
Sbjct: 431 GIAHAPTSGKYLVDTVHELFPLADKNLYTAKREGRNRTI 469


>gi|254458741|ref|ZP_05072165.1| response regulator PleD [Campylobacterales bacterium GD 1]
 gi|207084507|gb|EDZ61795.1| response regulator PleD [Campylobacterales bacterium GD 1]
          Length = 417

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 86/171 (50%), Gaps = 9/171 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           EL   +++I  ++  D L+G  N   F  S  S   K       L++   DID FK IND
Sbjct: 245 ELLDLFDKIRDMANKDFLTGAYNRRYFFDSGNSTYSKNKRNDTPLAVAMIDIDKFKNIND 304

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH +GD  I  +   L     T   + R GGEEF       S +   +L   +RK  E
Sbjct: 305 TYGHDIGDIAIKEVKKILDENLRTSDLMARFGGEEFCILLEDISLENIKVLFEKIRKKFE 364

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++ I+I++  +I  TIS GI      + +  +I  +D+ALY AK+SGRNRV
Sbjct: 365 DNVIDINA-TAISYTISTGIY-FGFSDSLEDMIRLSDEALYTAKESGRNRV 413


>gi|157375627|ref|YP_001474227.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157318001|gb|ABV37099.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 341

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 6/159 (3%)

Query: 107 DCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+G+LN  AF       L    +   ++  DID+FK  NDN+GH +GD+V+  ++ +L
Sbjct: 182 DALTGILNRRAFDDDFKGILNQSPDGTCLILVDIDHFKAFNDNYGHQLGDQVLKAVAKRL 241

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITI 220
                  + + R GGEEFA     +  + A  LA  +R+ +E   +      +   +IT 
Sbjct: 242 SEACRDGVKIYRYGGEEFAVLLPNNQLRTARHLAEAMRRSLEKVSLKDRRKDTRINNITA 301

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           S G+A+       + +I +AD+ LY AK+ GRNRV+  S
Sbjct: 302 SFGVAQWQPSMTHAQLIEQADKLLYEAKRLGRNRVMPIS 340


>gi|153829219|ref|ZP_01981886.1| sensory box/GGDEF family protein [Vibrio cholerae 623-39]
 gi|148875332|gb|EDL73467.1| sensory box/GGDEF family protein [Vibrio cholerae 623-39]
          Length = 642

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 18/174 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS--IVFFDIDYFKQINDNFGH 148
           NR+ +LS  D L+ L N   F  ++         Y ++    +   DID+FK+IND +GH
Sbjct: 473 NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKYGH 532

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+  ++  +        F+ R+GGEEFA     +S +EA  + N +R       +
Sbjct: 533 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVR-------L 585

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +I+S     +T+S G+ + C     S    RAD ALY +K SGRN++   + +E
Sbjct: 586 HIASLHHQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTAME 637


>gi|302672209|ref|YP_003832169.1| GGDEF domain-containing protein [Butyrivibrio proteoclasticus B316]
 gi|302396682|gb|ADL35587.1| GGDEF domain-containing protein [Butyrivibrio proteoclasticus B316]
          Length = 373

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 2/129 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGS 187
           L +   DID+FK+IND +GH  GD+ +  L+      F   +  GR GGEEF   A    
Sbjct: 245 LMVAIADIDFFKKINDTYGHVTGDEALKELTKVFSRYFDEGLLYGRWGGEEFLLIAPENV 304

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
           +  E   +  D+RK +E+++  +S    I  TIS G AE         ++  AD  LY+A
Sbjct: 305 TYAEFGSMLEDIRKQVEDNEF-MSGNEMIRFTISIGAAEYKKGMTSEQLMNTADDKLYIA 363

Query: 248 KKSGRNRVV 256
           K++GRN+VV
Sbjct: 364 KETGRNKVV 372


>gi|222149336|ref|YP_002550293.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221736320|gb|ACM37283.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 800

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 58/168 (34%), Positives = 81/168 (48%), Gaps = 11/168 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN   F + L    E        L+ +F D+D FK INDN GH  GD  +  L 
Sbjct: 354 DHLTGLLNRQGFENELDVQIEATDRQGGSLACLFVDLDRFKWINDNLGHHAGDTTLKILV 413

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHI 218
           D +V +        R+GG+EFA     +  E  A  +AND+  I E     I  G +  +
Sbjct: 414 DMIVHLLPENSVAARIGGDEFAILLRANDCETAARAVANDICGIFETP--FIVKGTATRL 471

Query: 219 TISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           + S GIA    H E  + ++ +AD A+Y  K+ G+N    F D   NT
Sbjct: 472 SASIGIALYPQHAETATELLQKADMAMYNRKRDGKNGFQIFDDSIGNT 519


>gi|218514309|ref|ZP_03511149.1| putative sensory box GGDEF family protein [Rhizobium etli 8C-3]
          Length = 178

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 79/144 (54%), Gaps = 3/144 (2%)

Query: 116 SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
           SA ++     +  +S+V FD+D+FK+IND  GH  GD V+  ++      F +   + R 
Sbjct: 9   SALLTQAEHGSRWISVVLFDLDHFKKINDLNGHDAGDAVLRHVAGVARENFRSFDLLVRH 68

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK---EP 232
           GGEEF A    S+   AA++A  +R  IE ++I + SG  + +T S G A R +      
Sbjct: 69  GGEEFLALLPDSTPDGAAVVAERVRLAIEMAEIALPSGERLKVTASFGCAGRANDGASRN 128

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
              ++ RAD ALY AK SGRN VV
Sbjct: 129 FEDLVKRADLALYAAKASGRNCVV 152


>gi|169829590|ref|YP_001699748.1| hypothetical protein Bsph_4157 [Lysinibacillus sphaericus C3-41]
 gi|168994078|gb|ACA41618.1| Hypothetical yneF protein [Lysinibacillus sphaericus C3-41]
          Length = 583

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 91/183 (49%), Gaps = 23/183 (12%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGL-----LNHSAFISSLGSYNEKLSIVFFDIDYF 139
           I+ SIL+       ++ ++  +D L+ L     L+H  F+     Y++    +  DID F
Sbjct: 411 IANSILR------TQLQEMVDLDHLTKLYARSYLDH--FVEKSLEYDQSGMFLLIDIDNF 462

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND +GH VGDK++  ++ QL    G+     R GGEE +      SE+EA  LA+ +
Sbjct: 463 KRINDTYGHQVGDKILMQIAVQLKETIGSRGICARWGGEEMSIYVPNISEKEALELASAI 522

Query: 200 RKIIENSQINISSGPSIHITISAG-IAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
            ++       I S     +TISAG I       P   ++   AD ALY AK SG+NR  C
Sbjct: 523 VEV-------IPSATDPQVTISAGLITWNDQDRPAFQSVFLHADTALYEAKNSGKNR-FC 574

Query: 258 FSD 260
             D
Sbjct: 575 IHD 577


>gi|126669000|ref|ZP_01739938.1| diguanylate cyclase (GGDEF domain) [Marinobacter sp. ELB17]
 gi|126626549|gb|EAZ97208.1| diguanylate cyclase (GGDEF domain) [Marinobacter sp. ELB17]
          Length = 417

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 66/129 (51%), Gaps = 6/129 (4%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           + SI+  DID FK +ND+FGH VGD+V+   +  LV        VGR GGEEF      +
Sbjct: 280 EFSIILLDIDNFKLVNDHFGHLVGDEVLKSFASLLVSSIRKSDIVGRWGGEEFLIICPDT 339

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIAERCHKEPISTIIYRADQALYV 246
             Q    LA  +RK I   +      P   +   S G+A     E   T+I R D+ALY 
Sbjct: 340 DLQGCENLAEQIRKRIAEHEF-----PEKRVLNASLGVAVHQQDENADTMIARVDKALYR 394

Query: 247 AKKSGRNRV 255
           AKK GRNRV
Sbjct: 395 AKKHGRNRV 403


>gi|71278698|ref|YP_266849.1| response regulator/GGDEF domain-containing protein [Colwellia
           psychrerythraea 34H]
 gi|71144438|gb|AAZ24911.1| response regulator/GGDEF domain protein [Colwellia psychrerythraea
           34H]
          Length = 419

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 88/171 (51%), Gaps = 18/171 (10%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLS--IVFFDIDYFKQINDNFGHPVG 151
           +I   +  D L+ L N  AF  S  S      N+K+   +   D+D+FK++ND +GH  G
Sbjct: 250 KIQHAANTDYLTDLANRRAFFRSAESRIKEYINKKVPYCLAMIDVDFFKKVNDTYGHDSG 309

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++  +   FG  +   RLGGEEFA    G          +D R+     +I +S
Sbjct: 310 DQVLKVIALYMRKHFGAGL-TARLGGEEFAVLLHGLDADYLHNKLDDFRR-----EIAVS 363

Query: 212 SGP----SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S P    SI IT+S G+      E +S  +  AD ALY AK++GRN++V F
Sbjct: 364 SIPAGDTSISITLSLGVVFDSEDE-LSKQMNEADNALYAAKENGRNQIVVF 413


>gi|117919661|ref|YP_868853.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117611993|gb|ABK47447.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 578

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 86/170 (50%), Gaps = 15/170 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  ++  D L+G  N     S +         +N  LSIV FDID FKQ ND +GH +G
Sbjct: 400 QVKAMAETDGLTGCYNRRYLDSQIQKELIYANDHNMPLSIVMFDIDNFKQFNDRYGHVLG 459

Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D+ +  + +    +   P   + R GGEEF      S  ++A  +A  LRK I    ++I
Sbjct: 460 DQCLKQIVNAAKSILQRPTDILARYGGEEFMLLLPSSHLEDAYKIAERLRKAI--IALHI 517

Query: 211 SSGPSIH---ITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255
               S H   +TIS G+A     + I T  ++ +AD+ALY AK+ GRNR 
Sbjct: 518 PHEDSSHSGLVTISLGVACWQPSQLIDTNRLLCQADEALYQAKQQGRNRT 567


>gi|320159581|ref|YP_004172805.1| hypothetical protein ANT_01710 [Anaerolinea thermophila UNI-1]
 gi|319993434|dbj|BAJ62205.1| hypothetical protein ANT_01710 [Anaerolinea thermophila UNI-1]
          Length = 680

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 11/172 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHP 149
           +R++  +R D L+G  N   F   L    +++        +++F D+D FK +ND + H 
Sbjct: 357 DRLNHQARHDALTGFPNRLYFFERLQQAVQRVQHTPDLRPALIFIDLDGFKMVNDTYDHA 416

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQI 208
           +GD+V+   +++L        F+ RLGG+EFA     + S  EA  +A  L +I    Q 
Sbjct: 417 MGDRVLRIFAERLKRSLRGSDFIARLGGDEFAILLEDTVSLDEAVRVAERLIQI--TRQP 474

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
               G  + +++SAGIA+    +    I+  AD A+Y AK  G++RV+ F +
Sbjct: 475 FDLDGRQVFLSMSAGIAQVLPNQRGEEILRNADMAMYAAKGKGKSRVMVFDE 526


>gi|301382183|ref|ZP_07230601.1| GGDEF domain protein [Pseudomonas syringae pv. tomato Max13]
 gi|302061899|ref|ZP_07253440.1| GGDEF domain protein [Pseudomonas syringae pv. tomato K40]
          Length = 528

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 86/170 (50%), Gaps = 11/170 (6%)

Query: 107 DCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L      +  E+  LS++  D D+FK+ ND+FGH  GD+ +  L+
Sbjct: 336 DKLTGLANRRRFDQFLDVEFKRARRERNMLSLILMDADHFKRYNDHFGHLAGDECLVALA 395

Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +      P  V  R GGEE A    G+ E  A  +A ++ + I + QI   + P   +
Sbjct: 396 RLVEQCIRRPGDVAARYGGEEIAVVLPGTDEASARQVAENILQAIRDEQITHPASPFGIV 455

Query: 219 TISAGIAERC-HKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           T+S G+A        IS   +I  AD+ALY AK  GRNRV   S+I  NT
Sbjct: 456 TVSLGVATVVGSNRQISQRGLIELADRALYAAKSQGRNRVNVASEIAFNT 505


>gi|269966199|ref|ZP_06180288.1| putative GGDEF family protein [Vibrio alginolyticus 40B]
 gi|269829114|gb|EEZ83359.1| putative GGDEF family protein [Vibrio alginolyticus 40B]
          Length = 252

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 8/157 (5%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S+ID L+ + N   F   L          N   +++ FD+D+FK IND  GH  GD V+ 
Sbjct: 87  SQIDALTNIYNRRVFFEKLTEEVIKAQEPNYHSALLLFDLDFFKVINDKRGHDAGDYVLE 146

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            L+D +  +        R+GGEEFA     +S   A  +  ++R  I+N Q        I
Sbjct: 147 TLADLVSHLLVKDEIFARVGGEEFAIILPETSLSAAKEVGEEVRSHIQNCQFEFEK-IEI 205

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +T+S G+ E    E    +   AD+ALY AK++GRN
Sbjct: 206 PVTVSVGVVEIGRNETTKRLYAHADKALYAAKRNGRN 242


>gi|262044623|ref|ZP_06017678.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038024|gb|EEW39240.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 443

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 27/162 (16%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+ L N S F  +L     K      LS++  D+D+FK+IND++GH  GDKVI F + 
Sbjct: 294 DPLTRLYNRSFFYDTLNQQLAKVNAQHPLSVLISDLDHFKRINDSYGHVAGDKVIQFAAS 353

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            L           R+GGEEFA   + + E+EA  +A  +R  +   + ++       +TI
Sbjct: 354 VLESHSRVDDAAARIGGEEFALLLVNTGEKEAQAIAERIRLAVSAGESHLPE----RMTI 409

Query: 221 SAGI---------AERCHKEPISTIIYRADQALYVAKKSGRN 253
           S G+         AE C        + RAD+A+Y AK +GRN
Sbjct: 410 SMGVYTTYDNSVTAEAC--------VQRADEAMYEAKNNGRN 443


>gi|160895993|ref|YP_001561575.1| diguanylate cyclase [Delftia acidovorans SPH-1]
 gi|160361577|gb|ABX33190.1| diguanylate cyclase [Delftia acidovorans SPH-1]
          Length = 414

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 77/173 (44%), Gaps = 15/173 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           +L  +  +I  L R D L+G+ N    I  L             L +   DID+FK+IND
Sbjct: 228 KLATALAQIEALLRHDDLTGVSNRRGVIERLHEVRTAAHDRGTVLCVALLDIDHFKRIND 287

Query: 145 NFGHPVGDKVI----AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +FGH  GD+V+      L  QL    G    VGR GGEEF      +   +A  L   LR
Sbjct: 288 SFGHEGGDRVLRAFGTLLKSQLRSADG----VGRYGGEEFLLVLPDTDLAQAGELLERLR 343

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             I  +    + G    +T + G A+    E +   I RAD ALY  K  GRN
Sbjct: 344 LRIAEAPWTQTLGEGARVTCTLGAAQYRAGESVEATIARADAALYRGKAQGRN 396


>gi|189426487|ref|YP_001953664.1| diguanylate cyclase [Geobacter lovleyi SZ]
 gi|189422746|gb|ACD97144.1| diguanylate cyclase [Geobacter lovleyi SZ]
          Length = 557

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 89/167 (53%), Gaps = 17/167 (10%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N           I+S      K++++F D+D+FK +ND  GH VGD+++  +S
Sbjct: 386 DALTGLPNRRLLEDRLNQSIASADRNAGKVAVLFLDLDHFKAVNDTLGHEVGDQLLKQVS 445

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS-SGPSIH 217
            +L         V RLGG+EF    L  +S Q+   +A+   K+I+      S +G    
Sbjct: 446 GRLQEAVRKSDTVARLGGDEFILLLLNITSHQDVDSVAD---KVIQAISRPFSIAGQQAQ 502

Query: 218 ITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +  S GIA   E C  +P S + + AD+ALY AK+SGRNR V F+ I
Sbjct: 503 VGTSIGIALYPEDC-TDPESLVAF-ADKALYKAKQSGRNRYVWFAAI 547


>gi|149920376|ref|ZP_01908846.1| FHA domain/GGDEF domain protein [Plesiocystis pacifica SIR-1]
 gi|149818818|gb|EDM78260.1| FHA domain/GGDEF domain protein [Plesiocystis pacifica SIR-1]
          Length = 297

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 93/181 (51%), Gaps = 11/181 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
           ++SG  ++  +  +  I +LS +D L+ + N   F+ +L         Y+  L+++ FDI
Sbjct: 117 FLSGDNIESSY--HEEIFRLSTVDGLTQVFNRRYFMETLERELSRARRYDRPLALLIFDI 174

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+ ND +GH  GD V+  +++ + +       V R GGEEF         + A+  A
Sbjct: 175 DHFKRCNDTYGHRAGDFVLRRIAELVTMRARKVDVVSRYGGEEFTVILPEIDIRGASAFA 234

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +RK+I +    I  G  I +TIS G+AE          +I  AD+ LY AK  GRNRV
Sbjct: 235 EKIRKLIADETF-IFEGRKIPVTISIGVAEIGPSVANADDMIQTADRRLYAAKTGGRNRV 293

Query: 256 V 256
           V
Sbjct: 294 V 294


>gi|331014505|gb|EGH94561.1| GGDEF domain protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 528

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 86/170 (50%), Gaps = 11/170 (6%)

Query: 107 DCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L      +  E+  LS++  D D+FK+ ND+FGH  GD+ +  L+
Sbjct: 336 DKLTGLANRRRFDQFLDVEFKRARRERNMLSLILMDADHFKRYNDHFGHLAGDECLVALA 395

Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +      P  V  R GGEE A    G+ E  A  +A ++ + I + QI   + P   +
Sbjct: 396 RLVEQCIRRPGDVAARYGGEEIAVVLPGTDEASARQVAENILQAIRDEQITHPASPFGIV 455

Query: 219 TISAGIAERC-HKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           T+S G+A        IS   +I  AD+ALY AK  GRNRV   S+I  NT
Sbjct: 456 TVSLGVATVVGSNRQISQRGLIELADRALYAAKSQGRNRVNVASEIAFNT 505


>gi|322433080|ref|YP_004210329.1| diguanylate cyclase/phosphodiesterase [Acidobacterium sp. MP5ACTX9]
 gi|321165307|gb|ADW71011.1| diguanylate cyclase/phosphodiesterase [Acidobacterium sp. MP5ACTX9]
          Length = 642

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 10/161 (6%)

Query: 107 DCLSGLLNHS----AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+GL N +    AF  +  +  E   ++  D+D FKQ+ND  GH VGD V+  +S ++
Sbjct: 215 DSLTGLANRALLQKAFEENNATSPEDRVLMVMDLDRFKQVNDTLGHRVGDHVLVEVSRRM 274

Query: 163 VVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPS-IHITI 220
             + G    + R GG+EFAA     SS Q   +LA+   +I+    + I SG   I I +
Sbjct: 275 KDILGEETLLVRTGGDEFAALIDNPSSLQTVELLAS---RIVSILTLPILSGEHIIQIGV 331

Query: 221 SAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           S GI  R      +S +++ AD ALY AK +GRNR + F +
Sbjct: 332 SIGICPRDQVNASLSDLLHCADLALYKAKNTGRNRYLVFEE 372


>gi|262165480|ref|ZP_06033217.1| GGDEF family protein [Vibrio mimicus VM223]
 gi|262025196|gb|EEY43864.1| GGDEF family protein [Vibrio mimicus VM223]
          Length = 406

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 17/181 (9%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           K+L+ +  ++  LS  D L+GL N    +  L           +    V  D+D FK++N
Sbjct: 228 KQLYQANRQLEALSLTDSLTGLPNRRKAMHQLALHWNLAREQKKPFVCVMIDVDGFKEVN 287

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D++GH +GDKV+  ++  L   F     V RLGG+EF A    +       +A  +   +
Sbjct: 288 DSYGHDIGDKVLTIIAHALKDHFRNDDLVCRLGGDEFLAICPNTDAVSGVHIAEHVCDEV 347

Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           E  +I +  G     ++S G+AE     + H E    ++  ADQA+Y+AK +G+NRV  F
Sbjct: 348 ELLEIPV-EGIHWQGSVSMGVAEFDPNMKEHHE----LLRAADQAVYLAKNNGKNRVCAF 402

Query: 259 S 259
           +
Sbjct: 403 N 403


>gi|258627546|ref|ZP_05722323.1| GGDEF family protein [Vibrio mimicus VM603]
 gi|258580128|gb|EEW05100.1| GGDEF family protein [Vibrio mimicus VM603]
          Length = 385

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 106/226 (46%), Gaps = 15/226 (6%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF--- 94
            +A V+ I  + L Y+ L  +  L  + V   S ++I    +L    I G++L       
Sbjct: 161 LLAAVLAIMMVML-YVPLVAYQTLPLMAVFRASTIVIQ---NLFFFIILGTMLMLFLFEE 216

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           I ++R+  +   D L+G  N   F       L   N    +   DID+FKQIND++GH +
Sbjct: 217 IEWHRLRSIR--DELTGSFNRRYFKEQVQRQLNQSNTPYVVALVDIDHFKQINDSYGHDM 274

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VI F+  +L  +  T   V R GGEEFA  A  +  +    + ND+   I  SQ   
Sbjct: 275 GDAVITFVVRKLESLNLTDCLVARYGGEEFAVFAREADAERVKEVLNDVCDAI--SQGFC 332

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               S+ +++S G             + +AD A+Y AK+ GRNRV+
Sbjct: 333 IENQSLKVSVSIGAVLFDTPFDYGEALRKADSAMYQAKEQGRNRVM 378


>gi|222102417|ref|YP_002539456.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221739018|gb|ACM39751.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 568

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 6/163 (3%)

Query: 100 ISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +++ +  D L+GL N       IS + + +   ++   D+D+FK+IND F H +GD+V+ 
Sbjct: 392 LTEAANTDPLTGLSNRRHLETIISDINTQSASYALAILDVDHFKKINDTFSHIIGDRVLV 451

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPS 215
            +   + VV        R GGEEF       +   A  ++  LR  I N     I+ G  
Sbjct: 452 QIGTLVKVVVRETDIAVRFGGEEFVILMTDLTLAHAERVSERLRMTITNFDWSEIADG-- 509

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +++++S G+A          ++  AD+ LY AK++GRNRVVCF
Sbjct: 510 LNVSVSIGVAMSDDAVDAEAVLQLADRRLYWAKQTGRNRVVCF 552


>gi|254517294|ref|ZP_05129351.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC sensor(s) [gamma
            proteobacterium NOR5-3]
 gi|219674132|gb|EED30501.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC sensor(s) [gamma
            proteobacterium NOR5-3]
          Length = 1521

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 52/136 (38%), Positives = 79/136 (58%), Gaps = 7/136 (5%)

Query: 130  SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGS 187
            ++V  DID+FK++ND  GH VGD+++  ++ +L     +   V R+GG+EF     ALG 
Sbjct: 1126 ALVMLDIDHFKRVNDTDGHGVGDELLVEVAARLRQRLRSFDTVARVGGDEFLMILNALGQ 1185

Query: 188  SEQEAAILA----NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQ 242
             + EA++ A    N++R  I + Q    +  S H+T S G+A     KE   T++ +AD 
Sbjct: 1186 DQMEASLTASRICNEIRADISSEQNLTGASTSHHVTGSFGVALFVGDKETAETLLKQADM 1245

Query: 243  ALYVAKKSGRNRVVCF 258
            ALY AK +GRNRV  F
Sbjct: 1246 ALYSAKDNGRNRVKLF 1261


>gi|241113203|ref|YP_002973038.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861411|gb|ACS59077.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 665

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 12/170 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
           +LS  D L+G+ N  A    L     ++ ++    S+   D+D+FK+ ND +GH  GD+ 
Sbjct: 242 ELSHTDYLTGIGNRRALDRRLDECWAAWKDERRDFSVFLIDVDFFKRFNDRYGHQEGDRC 301

Query: 155 IAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  +++ L  V G+    +GR GGEEF      +  + A  LA  +R  +E+  I     
Sbjct: 302 LTVIANALKAVVGSSDGMIGRYGGEEFIVVMPAALPKVAMTLAEKIRMEVESLAIAHDER 361

Query: 214 PS--IHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           P     +T+S G+A    K  E +  I+  AD ALY AK SGRN +  F 
Sbjct: 362 PDDMSTVTVSIGVAFTREKVGEKVERIVREADLALYNAKASGRNCIRSFD 411


>gi|158422622|ref|YP_001523914.1| hypothetical protein AZC_0998 [Azorhizobium caulinodans ORS 571]
 gi|158329511|dbj|BAF86996.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
          Length = 372

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 9/194 (4%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           LV N  LV + I +SL L  ++    ++       +  ++  D L+G +N       L  
Sbjct: 171 LVINAYLVHLVILVSLSLFVMTSLAFEQARAKAKALETMASTDSLTGTMNRRGLEQILRH 230

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
             G  + ++ ++  DID FK IND +GH  GD V+  ++ +L  V      VGR GG+EF
Sbjct: 231 VAGGSSGEIGLILIDIDNFKPINDTYGHLAGDAVLQAVAKRLAGVVRDSDVVGRWGGDEF 290

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                 +   +   +A+  R+ +     ++ +G  + +T+SAG+     + P +  + R 
Sbjct: 291 LIITRDAQLTDVIAMADRARQHVGT---HVLAG--MRVTLSAGVGVWDGQGPWADALQRI 345

Query: 241 DQALYVAKKSGRNR 254
           D+ALY AK  GRNR
Sbjct: 346 DRALYSAKAEGRNR 359


>gi|58581954|ref|YP_200970.1| hypothetical protein XOO2331 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84623865|ref|YP_451237.1| hypothetical protein XOO_2208 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188576445|ref|YP_001913374.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|58426548|gb|AAW75585.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84367805|dbj|BAE68963.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188520897|gb|ACD58842.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 324

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 14/189 (7%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
            I+   ++L +GY     +++  +    + +L+ +D L+GL N           I+    
Sbjct: 137 TIVGTLVTLAVGYAFSLRMQDDRVH---LEELASLDALTGLPNRRMLERALTDQINQRQP 193

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           ++   S++  D+D+FK++ND +GH  GD  ++ L+  L      P  V R GGEEF    
Sbjct: 194 HDRLNSLIILDLDHFKEVNDLYGHAAGDAALSDLATILRFEVRDPHQVFRFGGEEFVVLL 253

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
              S  E       LRK+I N       GP   IT+S G A    +        RAD AL
Sbjct: 254 RAGSLAELEAATERLRKVIRNGL----RGPGGRITVSLGAARHDGETHWQDWFSRADAAL 309

Query: 245 YVAKKSGRN 253
           Y+AK  GR+
Sbjct: 310 YLAKNGGRD 318


>gi|23010494|ref|ZP_00051163.1| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 210

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 91/170 (53%), Gaps = 17/170 (10%)

Query: 107 DCLSGLLNHSAFISSL----------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV-- 154
           D L+GL N  +F  +L          G   +  S++  DIDYFK+ ND +GH  GD+V  
Sbjct: 36  DALTGLGNRKSFEEALHRTVNVPPAPGGTGKPTSLIVLDIDYFKRFNDLYGHLTGDQVLR 95

Query: 155 -IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INISS 212
            +A +  + VV  G  +   R GGEEF      +  +EA  +A  +R  + + + +  S+
Sbjct: 96  LVAIVMREHVVQAGATL--ARFGGEEFGIVLPETDLEEARAVAERVRTSVTSRELVKRST 153

Query: 213 GPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           G S+  +T+S GIA +   +   +++ RAD  L+ AK++GR+R +  +++
Sbjct: 154 GESLGKVTVSLGIATQHGDDNAVSLLERADACLFAAKRAGRDRTLDETEV 203


>gi|304311724|ref|YP_003811322.1| hypothetical protein HDN1F_20940 [gamma proteobacterium HdN1]
 gi|301797457|emb|CBL45677.1| Hypothetical protein HDN1F_20940 [gamma proteobacterium HdN1]
          Length = 670

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 9/137 (6%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA------A 183
           +++F D+D FK IND+ GHPVGD+++  + D+L     TP  V RLGG+EF        +
Sbjct: 265 AVLFIDLDLFKNINDSLGHPVGDQLLIQVGDRLQKHLRTPDIVARLGGDEFIVILPELHS 324

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQ 242
            +  ++  A  +AN L+  I   +  ++  P +++T S GIA     +E I  II +AD 
Sbjct: 325 EIAQAKISAQHVANKLQAAI-GQEFQVNQHP-LNMTCSIGIAIFPIEQETIHDIIRQADT 382

Query: 243 ALYVAKKSGRNRVVCFS 259
           A+Y +K+ GRN V  F+
Sbjct: 383 AMYRSKRDGRNLVRFFT 399


>gi|251779276|ref|ZP_04822196.1| ggdef domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083591|gb|EES49481.1| ggdef domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 1728

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 11/165 (6%)

Query: 104  SRIDCLSGLLNHS----AF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
            S +D L+G+ N      AF   I    S   + S++ FDID FK +ND +GH  GD+V+ 
Sbjct: 1392 STLDKLTGVYNRKYLEKAFCDLIDDSYSKEREFSLIIFDIDDFKGVNDRYGHQTGDEVLI 1451

Query: 157  FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             L+ ++           R GGEEF       SE EA + +  +R  +E ++I    G   
Sbjct: 1452 KLTKEVKNCLSKEDIFVRYGGEEFIILLPDKSEYEAYLFSEKIRNRVECAKI---LGEKR 1508

Query: 217  HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +TIS GI+    H      +I  ADQALY++K  G+N+   +++
Sbjct: 1509 KVTISLGISVYLKHSSNSEDLIKMADQALYISKAQGKNKTTIWNE 1553


>gi|190893483|ref|YP_001980025.1| sensory box/GGDEF family protein (nitrogen fixation positive
           activator protein-like protein) [Rhizobium etli CIAT
           652]
 gi|190698762|gb|ACE92847.1| putative sensory box/GGDEF family protein (nitrogen fixation
           positive activator protein-like protein) [Rhizobium etli
           CIAT 652]
          Length = 737

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 108/209 (51%), Gaps = 22/209 (10%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA------ 117
           +++E L LV +   + L +G+++G  LK      N   + +  D LSGL N         
Sbjct: 266 MVIEALGLVGMFFMVLLAIGWLAGRRLK---AEENSAREEALRDRLSGLSNRDGLGLAVD 322

Query: 118 -FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
            F++        + +++ D+D FK++ND++GH  GD++I  ++  L V+      + R+G
Sbjct: 323 GFVAEARQSKRNVLLLYLDLDGFKEVNDSYGHGTGDQLIRAVAAGLQVLIPQGAVLARIG 382

Query: 177 GEEFAAAALGSSEQEAAILAND--LRKIIENSQIN---ISSGPSIHITIS-AGIAERCHK 230
           G+EFA A L   E  AA+  ++  L  ++E  +I    +  G SI I +S AG  +R   
Sbjct: 383 GDEFAIAFLSDGENAAALQLSEQILDFMVEPLEIGRRVVVVGASIGIAMSPAGAIDR--- 439

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFS 259
                ++ R+D A+Y AK++GR R+  + 
Sbjct: 440 ---EELVRRSDLAMYKAKEAGRARMTLYD 465


>gi|218245994|ref|YP_002371365.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8801]
 gi|257059045|ref|YP_003136933.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8802]
 gi|218166472|gb|ACK65209.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8801]
 gi|256589211|gb|ACV00098.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8802]
          Length = 308

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 91/179 (50%), Gaps = 11/179 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYF 139
            + K+L  +   + +L+  D L+G+ N           F  SL  Y     ++  D+D+F
Sbjct: 130 QVQKQLQEACQTMKKLADTDELTGIANRRCLLEFAQREFQRSL-RYGTPFCLLMIDVDHF 188

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND +GHP GDK I ++ + + +      F GR GGEEF      ++   A  +A  +
Sbjct: 189 KNINDKYGHPNGDKAIQWVVEIIKLGLREVDFFGRFGGEEFIVVLPQTALGGALEVAERI 248

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           R+ I +  + +    ++ +T S G+A    ++  +  +I RAD++LY AK  GRN+V+ 
Sbjct: 249 REAIASQPLTLEQD-TVTLTASIGVATYTGEDKTVVGMIQRADKSLYQAKAKGRNQVIA 306


>gi|167755256|ref|ZP_02427383.1| hypothetical protein CLORAM_00761 [Clostridium ramosum DSM 1402]
 gi|237735004|ref|ZP_04565485.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167705306|gb|EDS19885.1| hypothetical protein CLORAM_00761 [Clostridium ramosum DSM 1402]
 gi|229381780|gb|EEO31871.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 332

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 99/175 (56%), Gaps = 9/175 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           KEL +S  ++    R D L+G+LN  +    ++   S ++   I+  DIDYFK++NDN G
Sbjct: 160 KELEMSNQQVIYNLRHDYLTGILNRPSLEKEVTEAMSNHQYGVILVLDIDYFKEVNDNNG 219

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF-AAAALGSSEQEAAILANDLRKIIENS 206
           HP GD+V+  L++ +   F + +  GR+GG+EF    AL  +  +A  +   +++  +N 
Sbjct: 220 HPYGDEVLIKLANTMQESFKSGI-CGRIGGDEFIIYLALDDANYDA--IEKTIKEFKQNW 276

Query: 207 QINISS-GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           Q NI++   S  IT+S G A    H +    +   AD+ALY++K +GRNR+  + 
Sbjct: 277 QKNITTIDRSSTITLSIGGAYYPKHGKNYQELWSNADKALYLSKNNGRNRISIYQ 331


>gi|331014876|gb|EGH94932.1| GGDEF domain protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 677

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 81/157 (51%), Gaps = 8/157 (5%)

Query: 106 IDCLSGLLNHSAFISSLGS-----YNEKLSIV--FFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+GL N +++   L         +K S++    D+DYFK+IND +GH  GDKV+  +
Sbjct: 519 IDPLTGLPNRASWGERLEQEMADWQRDKNSLLVCILDLDYFKRINDGYGHLAGDKVLKIV 578

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           ++          F+ R GGEEF      +       L ++LR  +E    +   G  + I
Sbjct: 579 ANVFKKRLRPADFLARFGGEEFVMLLPATLLGAGLTLLDELRTAVELCPFHFK-GERVTI 637

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T+S G+      E   T I RADQALY AK++GRNRV
Sbjct: 638 TVSIGVTALRTGERSDTAIKRADQALYRAKENGRNRV 674


>gi|150397885|ref|YP_001328352.1| diguanylate cyclase [Sinorhizobium medicae WSM419]
 gi|150029400|gb|ABR61517.1| diguanylate cyclase [Sinorhizobium medicae WSM419]
          Length = 316

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 9/166 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHPVGDK 153
           + S++D L+ L N    +  L  + +  +        +   DIDYFK IND FGH  GD+
Sbjct: 138 RASQVDDLTSLPNRRYTMERLKEFIQNCAENPHMWGCVAIIDIDYFKAINDRFGHYRGDE 197

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+   + Q+          GR+GGEEF      ++  EA ++ + L   I +++  +S+ 
Sbjct: 198 VLLDFARQMQEFVRRSDCFGRIGGEEFMLILPDTTVSEANLILDRLLDKIRSAR-PLSNI 256

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           P    T S G+AE    + +  I  RAD ALY+AK+ GR+RV  F+
Sbjct: 257 PEFFYTCSVGLAEYREGDSVGDIYSRADAALYIAKREGRDRVSRFT 302


>gi|86357391|ref|YP_469283.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|86281493|gb|ABC90556.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
          Length = 418

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 68/128 (53%), Gaps = 4/128 (3%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  D D+FK +ND  GH  GD+V+  ++ +L     +   + R GGEEF A   G+S 
Sbjct: 289 TVLIIDADHFKDVNDGHGHLQGDEVLKAIAARLGATLRSSDRIFRFGGEEFVAVCPGTSH 348

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAK 248
           +E  +L   LR  IE S       P   +T+S G+A         +T++  AD  LY AK
Sbjct: 349 EEGLLLGERLRWTIETSVKTPDEKP---VTVSIGVATADEDGASFTTVLAAADDRLYAAK 405

Query: 249 KSGRNRVV 256
           KSGRN VV
Sbjct: 406 KSGRNCVV 413


>gi|127512723|ref|YP_001093920.1| diguanylate cyclase [Shewanella loihica PV-4]
 gi|126638018|gb|ABO23661.1| diguanylate cyclase [Shewanella loihica PV-4]
          Length = 339

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 6/156 (3%)

Query: 107 DCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+G LN  AF   L        E   ++  D+D+FK  ND +GH +GD V+  ++ +L
Sbjct: 182 DALTGALNRRAFDQDLKGLLAQSPEGTCLILADVDHFKSFNDTYGHHLGDNVLKAVAKRL 241

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                  + + R GGEEFA     S +++A  LA+ +R+ +E   +           ISA
Sbjct: 242 NESCRDGVKLYRYGGEEFALIVPNSHQRKARHLADAMRRTLEKISLKDRRKNQTIDKISA 301

Query: 223 --GIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             G++E   K+   ++I R D  LY AK+ GRNRV+
Sbjct: 302 SFGVSEWQAKDTFESLIERTDGFLYDAKRLGRNRVM 337


>gi|302134297|ref|ZP_07260287.1| GGDEF domain protein [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 528

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 86/170 (50%), Gaps = 11/170 (6%)

Query: 107 DCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L      +  E+  LS++  D D+FK+ ND+FGH  GD+ +  L+
Sbjct: 336 DKLTGLANRRRFDQFLDVEFKRARRERNMLSLILMDADHFKRYNDHFGHLAGDECLVALA 395

Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +      P  V  R GGEE A    G+ E  A  +A ++ + I + QI   + P   +
Sbjct: 396 RLVEQCIRRPGDVAARYGGEEIAVVLPGTDEASARQVAENILQAIRDEQITHPASPFGIV 455

Query: 219 TISAGIAERC-HKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           T+S G+A        IS   +I  AD+ALY AK  GRNRV   S+I  NT
Sbjct: 456 TVSLGVATVVGSNRQISQRGLIELADRALYAAKSQGRNRVNVASEIAFNT 505


>gi|239626912|ref|ZP_04669943.1| GGDEF domain-containing protein [Clostridiales bacterium
           1_7_47_FAA]
 gi|239517058|gb|EEQ56924.1| GGDEF domain-containing protein [Clostridiales bacterium 1_7_47FAA]
          Length = 536

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 10/179 (5%)

Query: 89  ILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQIN 143
           I +++ +  N   Q+   S  D L+GL N   F   +     +  +S+++ D+D+FK +N
Sbjct: 353 IFRDVTVERNLEKQILHSSNTDFLTGLYNRRYFYQYINHNRGDRAVSLLYIDLDWFKAVN 412

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGD V+   +  LV  F    FV RLGG+EF  A LG    E   L  +  + +
Sbjct: 413 DTYGHKVGDAVLTGTARMLVESFPDD-FVARLGGDEFLVARLGECSMEQ--LEKEAGEFL 469

Query: 204 ENSQINISSGPSIH-ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           E       +   +  ++ S GIA+    +  I  +I  +DQALY AKK GR+R   + +
Sbjct: 470 EKLNARFQASREMQSLSASIGIAQGKDGDMDIDLLIQHSDQALYQAKKEGRSRYCVYRE 528


>gi|146311662|ref|YP_001176736.1| diguanylate cyclase [Enterobacter sp. 638]
 gi|145318538|gb|ABP60685.1| diguanylate cyclase [Enterobacter sp. 638]
          Length = 482

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 6/132 (4%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+++  DIDYFK INDN+GH  GD V+A  + ++    G    V R+GGEEFA       
Sbjct: 332 LTVMLLDIDYFKSINDNYGHECGDNVLAAFAGKVQQEVGEDGIVARMGGEEFAVVVDSVD 391

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGI----AERCHKEPI-STIIYRADQA 243
            Q+   LA  +R+ I  S   I     + IT+S G+    AE      + + ++  AD  
Sbjct: 392 AQQGLALAERIRETIA-SHPFIWRQQRLFITVSIGLGSAKAESWQLTDVFNKLMAEADDY 450

Query: 244 LYVAKKSGRNRV 255
           LY +KK+GRNR+
Sbjct: 451 LYRSKKAGRNRI 462


>gi|331019676|gb|EGH99732.1| GGDEF protein [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 512

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 113/242 (46%), Gaps = 30/242 (12%)

Query: 34  FFSIFIATVIF---IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
            FSIF+  V++   + ++ ++ + L   Y  ++   E    V+ S   +LL   +   +L
Sbjct: 1   MFSIFLLAVVWEFKLESLAMYAMDLP--YDPDFEDAERWRFVLTSTAFALLSMVVPFILL 58

Query: 91  KELFI----SYNRI-------SQLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFD 135
           K L      SYN +         L+R D LSGLLN    H   ++ L   + + ++   D
Sbjct: 59  KRLMQRLQSSYNDLLVAQALSDSLARHDPLSGLLNRRVFHEQLVARLQQESTQTAVFLID 118

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ-EAA 193
           +D FK IND  GH VGD  I  +++ L     G    V RLGG+EF  A  G   Q E A
Sbjct: 119 LDKFKLINDTHGHAVGDAAICAVAESLRDATTGWQASVARLGGDEFGLAVSGDFSQFELA 178

Query: 194 ILANDLRKIIENSQINISSGPSIHITISA--GIA-ERCHKEPISTIIYRADQALYVAKKS 250
            LA ++      ++I +SS     +T+SA  G+A           ++ RAD A+Y  K  
Sbjct: 179 ALAENVL-----AKIALSSAGLPRVTLSATLGVAISPLDGSDAEVLLQRADSAMYRGKNG 233

Query: 251 GR 252
           GR
Sbjct: 234 GR 235


>gi|298292199|ref|YP_003694138.1| diguanylate cyclase [Starkeya novella DSM 506]
 gi|296928710|gb|ADH89519.1| diguanylate cyclase [Starkeya novella DSM 506]
          Length = 398

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 15/163 (9%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL N   F+      + K   ++++  D+D FKQ+ND FGH  GD+V+   ++ L+
Sbjct: 224 DELTGLFNRRGFMEEAVPASRKGGPMALMVLDLDRFKQVNDQFGHAAGDRVLVLFAEVLL 283

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII--ENSQINISSGPSIHITIS 221
           +         R+GGEEFAA       + A  +A  +R     E +++ + +G ++  ++S
Sbjct: 284 LELRPGDVAARIGGEEFAALLPDVRPETARQIAERIRGSFRQELNRLKLGAG-TLECSVS 342

Query: 222 AGIA-----ERCHKEPISTIIY----RADQALYVAKKSGRNRV 255
            G+A     +   +E I   I     RAD ALY AK  GRNR+
Sbjct: 343 IGLALGAAPQGPAREEIEAAILRNMARADAALYEAKAQGRNRI 385


>gi|296535607|ref|ZP_06897787.1| diguanylate kinase [Roseomonas cervicalis ATCC 49957]
 gi|296264062|gb|EFH10507.1| diguanylate kinase [Roseomonas cervicalis ATCC 49957]
          Length = 459

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 85/160 (53%), Gaps = 2/160 (1%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +R  +L+  D L+GL N    I  L     N   +++  D+D FK +ND +GH VGD V+
Sbjct: 285 DRSLELAVTDSLTGLRNRRYIIRHLEGLLRNGPAALLMLDVDRFKAVNDTYGHGVGDIVL 344

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++ ++         V R GGEEF  A   ++++EA  +A+ LR  +  + + +S    
Sbjct: 345 REVAARMKRHLRDVDVVARFGGEEFVVAMAAATQEEAMQIADRLRLSMAENPVPVSPERR 404

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + IT S G+A     E +  ++  AD ALY AK +GRNR+
Sbjct: 405 LGITASIGVALAKGGEALPRLMAAADAALYRAKANGRNRI 444


>gi|291617190|ref|YP_003519932.1| YedQ [Pantoea ananatis LMG 20103]
 gi|291152220|gb|ADD76804.1| YedQ [Pantoea ananatis LMG 20103]
          Length = 390

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 122/263 (46%), Gaps = 44/263 (16%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLE-------- 62
           +WL       +F P   +++  + F +     +F+ N        T   G++        
Sbjct: 143 LWLARRDMNTTFWPAQLLLWTHLLFHV---ARLFLDN--------TRPVGIQGAISGSDF 191

Query: 63  --YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
             Y+++E++ L +I  T+++L      +++ E   + N +   S  D L+ + N  A  S
Sbjct: 192 SIYVILESM-LFVIGFTVTIL------AMVNER--TRNALKDASLHDPLTNIWNRRALFS 242

Query: 121 SLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              +        N  L++V FD+D+FK IND +GH  GD+V+    +++           
Sbjct: 243 GADAMIRFCLKQNRALTVVLFDLDHFKGINDRYGHQQGDRVLIDFCNRVSGTLPQDGRFA 302

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-P 232
           RLGGEEF AA L  S ++A +    +R+ +++S+        I  ++S G A   + E  
Sbjct: 303 RLGGEEF-AALLPLSFEQARVWCEQVRQTVQHSRPG-----QIAYSVSIGFATADNGEID 356

Query: 233 ISTIIYRADQALYVAKKSGRNRV 255
              ++  AD+ALY AK  GRNR 
Sbjct: 357 FGQLMALADKALYRAKAKGRNRT 379


>gi|291279477|ref|YP_003496312.1| hypothetical protein DEFDS_1087 [Deferribacter desulfuricans SSM1]
 gi|290754179|dbj|BAI80556.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 404

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 14/162 (8%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+ + N +               Y + LS++  DID FK++NDNFGH +GD V+ + 
Sbjct: 246 VDSLTNIYNRNYLERKYPEEFEKFKRYGQPLSVIMLDIDDFKKVNDNFGHQIGDNVLRYF 305

Query: 159 SDQLVVVFGTPMFVG---RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
           +    V+      V    R GGEEF      +  ++A ++AN + K + ++   +  G +
Sbjct: 306 A---TVIKNNIRKVDIPFRYGGEEFLILLPHTKLEQAMVVANRIHKELNDTMFKV-KGLT 361

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +T S G+ E    + + ++I R D  L   KK G+NRV+ 
Sbjct: 362 LKVTASIGVTEARESDSMESLIKRVDDLLLKVKKEGKNRVLS 403


>gi|254506998|ref|ZP_05119136.1| ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219549993|gb|EED26980.1| ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 292

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 15/172 (8%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           S  D L+GLLN       L             E + +   D+D+FK IND FGH +GD++
Sbjct: 111 SERDKLTGLLNRRTLEERLSQSFDLVSPREGGEHMWVAIIDLDHFKSINDQFGHMIGDEI 170

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   S Q+   F     + R GGEEF        +  A       RK IE  +      P
Sbjct: 171 LLMFSQQMQNYFCDNEQLFRFGGEEFVVLLPQQDQSHAYDKLEGFRKHIEKYRF-----P 225

Query: 215 SI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            +  IT+S G+      E + TI+  AD+ALY+AK  GRN++  + ++  + 
Sbjct: 226 QVQQITLSCGLCAISRHEYLPTILGHADKALYLAKTEGRNQIRSYDELAKDN 277


>gi|163801103|ref|ZP_02195003.1| GGDEF family protein [Vibrio sp. AND4]
 gi|159175452|gb|EDP60249.1| GGDEF family protein [Vibrio sp. AND4]
          Length = 446

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 18/165 (10%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++L+  D L+G +N  A  S L          +E LS+++ D+D FK++ND +GH VGD 
Sbjct: 277 AELAHRDALTGAMNRHALQSWLEQQARLVRWGHELLSVLYVDLDKFKRVNDKYGHQVGDD 336

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++      +         + R GGEEF      +  ++A   A  +R+++E         
Sbjct: 337 ILREFVMVITSAIQPDDRLVRWGGEEFVVFCPNTDIRQATKRAEVVRQMVEKHHW----- 391

Query: 214 PSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +H   +T S G+A+    E +S  + RAD+ LY+AK++GRNR 
Sbjct: 392 --VHGEALTCSVGVAQ-MQDERVSETMARADEVLYLAKRNGRNRT 433


>gi|153803816|ref|ZP_01958402.1| sensory box/ggdef family protein [Vibrio cholerae MZO-3]
 gi|124120648|gb|EAY39391.1| sensory box/ggdef family protein [Vibrio cholerae MZO-3]
          Length = 255

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 18/174 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS--IVFFDIDYFKQINDNFGH 148
           NR+ +LS  D L+ L N   F  ++         Y ++    +   DID+FK+IND FGH
Sbjct: 86  NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGH 145

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+  ++  +        F+ R+GGEEFA     +S +EA  + N +R       +
Sbjct: 146 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVR-------L 198

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +I+S     +T+S G+ + C     S    RAD ALY +K SGRN++   + +E
Sbjct: 199 HIASLHHQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTTME 250


>gi|114706503|ref|ZP_01439404.1| periplasmic sensor diguanylate cyclase (GGDEF) [Fulvimarina pelagi
           HTCC2506]
 gi|114537895|gb|EAU41018.1| periplasmic sensor diguanylate cyclase (GGDEF) [Fulvimarina pelagi
           HTCC2506]
          Length = 442

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 15/158 (9%)

Query: 107 DCLSGLLNHSAFISSL---------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           D L+GL N  AF  S+         G     ++++  DID+FKQ+ND +GH  GDKV+  
Sbjct: 214 DSLTGLPNRRAFDQSVERLSDLRERGEVPGPVALLLIDIDHFKQVNDQWGHFFGDKVLRS 273

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +S  +         + R GGEE A     +   +A  +A  +R  +EN +  +    S+ 
Sbjct: 274 VSTTIRRQVRRGDILARYGGEEIAVILPSTQHSDACSVAERIRMAVENGEFRVKITASVG 333

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + I   I   C       +   AD+ALY AKK+GRNR+
Sbjct: 334 VAIDEDINAFCD------LFQAADRALYRAKKNGRNRI 365


>gi|325497407|gb|EGC95266.1| hypothetical protein ECD227_1504 [Escherichia fergusonii ECD227]
          Length = 366

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 79/165 (47%), Gaps = 11/165 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q +  D L+GLLN   F        S  G  ++  S++  D D FK +ND +GH  GD
Sbjct: 205 LEQAAMRDALTGLLNRRQFFLLTEHNSSQPGLMSQDYSLLLIDTDRFKSVNDLYGHQKGD 264

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  L+  L         V R GGEEF      ++  +A  LA  +R  +  ++I ++ 
Sbjct: 265 DVLCVLARTLESCARKGDLVFRWGGEEFVLLLPRTTLDDALALAETIRAQV--AKITLTG 322

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            P    T+S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 323 LPRF--TVSIGVARHEIDETIDALFKRVDDALYRAKNDGRNRVLA 365


>gi|325168565|ref|YP_004280355.1| diguanylate cyclase [Agrobacterium sp. H13-3]
 gi|325064288|gb|ADY67977.1| diguanylate cyclase [Agrobacterium sp. H13-3]
          Length = 404

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 19/165 (11%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           ++S+ D L+GL N  AF           +++ +S++ FD+D+FK IND  GH  GDKV+ 
Sbjct: 219 RVSQTDQLTGLANRHAFFEQASRILRERHDDPVSLLAFDLDHFKAINDRHGHQTGDKVLQ 278

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-----LANDLRKIIENSQINIS 211
             ++      G    + RLGGEEF AA L   +   A+     +A+   K    ++    
Sbjct: 279 LFAETAREEAGPDALIVRLGGEEF-AALLPRCDHSQALSRGLAIASRFAKAAARAE---- 333

Query: 212 SGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G     T+S G+ A  CH   ++ ++  AD ALY AK  GRNRV
Sbjct: 334 -GLETQATVSIGLAAPDCHD--LAGMLASADGALYRAKALGRNRV 375


>gi|220934578|ref|YP_002513477.1| diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995888|gb|ACL72490.1| diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 464

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 9/167 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ QL+  D L+G+ N    +            +   LS++  D+D+FK+IND++GH  
Sbjct: 297 RKLEQLASTDALTGVANRRQLVERADMEVPRSERHGAPLSLLCLDLDHFKRINDDYGHLA 356

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  +++ +         + R+GGEEF      +    A  +A  +R  +E   I +
Sbjct: 357 GDEVLKQVAEAIQQSLRPSDLLARVGGEEFHVLLPDTDLAGARDVAERIRVKLEGLDIPV 416

Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             G  +H+T+S G A+       + ++ + AD+ LY AK  GRNRVV
Sbjct: 417 -QGVVLHVTVSVGCAQLGPDGADMKSLTHTADERLYQAKALGRNRVV 462


>gi|170729523|ref|YP_001774956.1| GGDEF family protein [Xylella fastidiosa M12]
 gi|167964316|gb|ACA11326.1| GGDEF family protein [Xylella fastidiosa M12]
          Length = 554

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 20/163 (12%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+G L   A        I         LS+VF DID+FK+IND +GH  GD  +  +
Sbjct: 395 VDGLTGALTRVAIERRLERDIDDARQMGTPLSVVFIDIDHFKRINDEYGHAAGDACLRQV 454

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP---- 214
             ++         +GR GG+E  A   G+    A       R++ E  ++ +SS P    
Sbjct: 455 VQRVRGWLRASDALGRHGGDELIAILPGADLAAA-------RRVAEGIRVAVSSQPFQFE 507

Query: 215 --SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              +  T+S G+A     E I  ++ RAD  LY +K +GR+RV
Sbjct: 508 CTRLRCTLSLGVASWLPDESIEALLQRADNGLYASKAAGRDRV 550


>gi|238796548|ref|ZP_04640055.1| hypothetical protein ymoll0001_30130 [Yersinia mollaretii ATCC
           43969]
 gi|238719526|gb|EEQ11335.1| hypothetical protein ymoll0001_30130 [Yersinia mollaretii ATCC
           43969]
          Length = 414

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 6/134 (4%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           Y    S++  D+D+FK IND  GH  GD+V+  L+  L  +      V R GGEEFA   
Sbjct: 285 YGHNFSLILLDVDHFKSINDQLGHNKGDEVLILLARTLESIIRESDIVFRWGGEEFAILL 344

Query: 185 LGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
             ++ + A  LA  +R+ I+   Q N+       +T+S G+A+    E   ++  R D+A
Sbjct: 345 PLTNLEGALQLAESIRETIQMICQPNLPQ-----LTVSIGVAQHQVGEDTDSLFKRMDEA 399

Query: 244 LYVAKKSGRNRVVC 257
           LY AK SGRNRV+ 
Sbjct: 400 LYRAKASGRNRVLA 413


>gi|326390488|ref|ZP_08212045.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Thermoanaerobacter ethanolicus JW 200]
 gi|325993456|gb|EGD51891.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Thermoanaerobacter ethanolicus JW 200]
          Length = 633

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 76/155 (49%), Gaps = 13/155 (8%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ + N   F+  L    E+        S+V FD+D+FK IND FGH  GD V+  ++
Sbjct: 479 DPLTNIYNRRFFMQMLEQEIERTKRNKKPFSLVMFDLDHFKNINDRFGHAAGDIVLRSVA 538

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HI 218
           D +        +  R GGEEF      +S  +A  LA +LRK     QI++     I  I
Sbjct: 539 DTVKGRIRKTDYFARWGGEEFIILLPETSLDDAVALAEELRK-----QISMMELEGIDKI 593

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           T S G+ E    + I T++ R D  LY AK  GRN
Sbjct: 594 TASFGVTEYSDTDTIDTVLIRVDNMLYEAKGEGRN 628


>gi|218134600|ref|ZP_03463404.1| hypothetical protein BACPEC_02503 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989985|gb|EEC55996.1| hypothetical protein BACPEC_02503 [Bacteroides pectinophilus ATCC
           43243]
          Length = 576

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 93/198 (46%), Gaps = 14/198 (7%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           L ++ + IS+L   I   ++  LFI   R    Q +  D L+GLLN S F   L  Y  +
Sbjct: 248 LAVVGVIISVL---IEALVIAFLFIDKQRQYFRQRAITDELTGLLNRSGFNDELDRYARE 304

Query: 129 LSI-----VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
           +       +  D+D FK IND +GH VGD+ +  L+  +V  F     +GR GG+EF   
Sbjct: 305 IGSKPCVGIMLDVDDFKSINDIYGHAVGDEALKNLARSMVNEFPDNSIIGRNGGDEFCIV 364

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQ 242
                E +A    + + +     ++    G   +  IS G AE   H    S ++  AD 
Sbjct: 365 L---KETDAETAGDQIERFCHQQRMFRFHGREYNYRISLGYAEYPKHAGKRSELLRCADV 421

Query: 243 ALYVAKKSGRNRVVCFSD 260
           ALY  K  G+N  +C++D
Sbjct: 422 ALYEVKLKGKNGCMCYTD 439


>gi|78778295|ref|YP_394610.1| response regulator receiver /GGDEF/PAS/PAC domain-containing
           protein [Sulfurimonas denitrificans DSM 1251]
 gi|78498835|gb|ABB45375.1| response regulator receiver (CheY-like) modulated diguanylate
           cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Sulfurimonas denitrificans DSM 1251]
          Length = 849

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 89/186 (47%), Gaps = 18/186 (9%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEKL---SIVFFDIDYFKQI 142
           +KE      R+  LS  D L+ L N   F    +  LG     +    ++  D+DYFKQ 
Sbjct: 253 IKEDITDKKRVEMLSVTDMLTSLFNRRYFSEILVKELGRAKRNMLNFCLIIVDVDYFKQY 312

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD V+  +++ L +  G    F  R+GGEEFA       + +      ++R 
Sbjct: 313 NDFYGHQAGDNVLRKIAECLSISSGRGNDFAFRIGGEEFAIITSNMDDDDVMNYVENIRL 372

Query: 202 IIENSQIN-ISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            IEN +IN   S  S ++T S G+       E    + +  I   AD+ LY AKK GRNR
Sbjct: 373 SIENLKINHEKSKVSDYVTASFGVMNFSPSIELLSSDDVYNI---ADKNLYEAKKDGRNR 429

Query: 255 VVCFSD 260
           VV + +
Sbjct: 430 VVFYKN 435


>gi|257092657|ref|YP_003166298.1| diguanylate cyclase/phosphodiesterase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045181|gb|ACV34369.1| diguanylate cyclase/phosphodiesterase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 455

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 10/155 (6%)

Query: 110 SGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
           +GL   +  I+ +G+   +L  ++ DID F+Q+N++FGH  GD VIA +++++    G P
Sbjct: 39  AGLQAAAVLIADVGARQARLCAIWLDIDRFRQVNESFGHAAGDGVIARIAERIRSAIGLP 98

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDL----RKIIENSQINISSGPSIHITISAGIA 225
             + R+GG+EF   A       A  LA  L    R  +   ++ I    SI I +     
Sbjct: 99  CALLRMGGDEFVVLAAVRDRSAATQLARQLLVEIRLPLTVDELLIRPSASIGIAL----- 153

Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           E+  +EP +  + RAD+A+  AK+ G NR+    D
Sbjct: 154 EQVGEEP-AAWLERADRAMLEAKRRGGNRLALSGD 187


>gi|167848143|ref|ZP_02473651.1| hypothetical protein BpseB_22921 [Burkholderia pseudomallei B7210]
 gi|167896698|ref|ZP_02484100.1| hypothetical protein Bpse7_23345 [Burkholderia pseudomallei 7894]
          Length = 441

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 11/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           + LF ++  + + +  D L+ + N S F             +N  L++V  D+D+FKQ N
Sbjct: 254 RRLFDAHASLMRTASHDALTMVYNRSYFNEQFERAFHYARRHNTPLALVMVDVDHFKQYN 313

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD  +A ++  L  V G    FV R GGEEFA    G+ E+ AA +A   R+ 
Sbjct: 314 DTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPGADERGAATIAERARQA 373

Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
           +E  +I   + P  ++T+SAG A       E    +I  AD ALY AK  GRN
Sbjct: 374 VERLRIAADTAPG-YVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRN 425


>gi|77458522|ref|YP_348027.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1]
 gi|77382525|gb|ABA74038.1| putative GGDEF domain protein [Pseudomonas fluorescens Pf0-1]
          Length = 503

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 10/176 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L  S  ++  L+  D L+GL N   F  +L     +       L+++  DIDYFK  N
Sbjct: 322 QQLLSSNRQLELLAMKDALTGLANRRCFDVTLDLEARRAQRDGTSLALLMIDIDYFKLFN 381

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D++GH  GD  +  + + +      P   V R GGEE       +  + A I+A  +   
Sbjct: 382 DSYGHVAGDDCLQRVGNVVETCVRRPSDLVARYGGEEMGVIMPNTDSEGAQIVAQLILDR 441

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256
           ++ + I+  S P   +++S GIA        P+  +I  ADQALY AK  GRNR V
Sbjct: 442 LQQANISHESSPLGRVSVSIGIATAAGSRLTPVQGLIEAADQALYSAKALGRNRSV 497


>gi|117923549|ref|YP_864166.1| cyclic nucleotide-binding protein [Magnetococcus sp. MC-1]
 gi|117607305|gb|ABK42760.1| cyclic nucleotide-binding protein [Magnetococcus sp. MC-1]
          Length = 592

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 17/168 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            RI+  +  D L+G+ N S F       I    +  ++L+I+F D+D FK +NDN GH  
Sbjct: 414 RRITYQANYDALTGIPNRSYFQQLLNQSIQRAAAEGKRLAIIFIDLDRFKWVNDNLGHGA 473

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIEN-SQ 207
           GD+++   S +          V RLGG+EF A    +G +EQ  A+     ++++E+ ++
Sbjct: 474 GDELLRLSSKRAASCLKGRDTVARLGGDEFVAILEHVGDTEQAFAV----SKRVLESLNR 529

Query: 208 INISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
             +  G  ++I+ S G+A   +   +P   ++ RAD+A+Y +K++GRN
Sbjct: 530 PFMLDGKEVYISGSMGVAIYPQDATQP-EELLTRADEAMYCSKRAGRN 576


>gi|325961513|ref|YP_004239419.1| diguanylate cyclase (GGDEF) domain-containing protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323467600|gb|ADX71285.1| diguanylate cyclase (GGDEF) domain-containing protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 383

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 75/156 (48%), Gaps = 11/156 (7%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSI-------VFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN  AF++        LSI       V  D+D+FK IND +GH  GD  +   +
Sbjct: 223 DDLTGLLNRKAFLNLAAEQLSDLSITRGAGALVLADLDHFKAINDTYGHAAGDIALQTFA 282

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQINISSGPSIHI 218
           D       +   VGR GGEEF     G+S + A I+A  + R++   + ++    P++  
Sbjct: 283 DACTATVRSTDLVGRYGGEEFVLLIPGASAERAEIIAEAISRRLASATTVDGMEMPTVSY 342

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            IS         E    +I  AD ALY AK  GRNR
Sbjct: 343 GISTYDGATTDVE---RLIASADAALYSAKSLGRNR 375


>gi|292492698|ref|YP_003528137.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291581293|gb|ADE15750.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 327

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 88/177 (49%), Gaps = 12/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           +L  +  ++ QLS +D L+G+ N   F  ++             LS++  DID FK  ND
Sbjct: 147 QLEAANEQLRQLSSLDELTGVANRRQFEMTIRQEFRRAMRNKSSLSVIMIDIDNFKAYND 206

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  L  V   P   + R GGEEF      +  + A  LA  LR+ +
Sbjct: 207 IYGHQAGDDCLRQVAKALSSVLKRPNDLLARYGGEEFVVILPETGSKGARSLAESLRRAV 266

Query: 204 ENSQI--NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E  +I    +S   + +TIS G++       E  + +I  ADQALY +K++GRNRV 
Sbjct: 267 EILKIPHRYASQSGLQVTISLGVSTLVPQRDEDPTKLIAAADQALYQSKRAGRNRVT 323


>gi|283833179|ref|ZP_06352920.1| putative GGDEF domain protein [Citrobacter youngae ATCC 29220]
 gi|291070812|gb|EFE08921.1| putative GGDEF domain protein [Citrobacter youngae ATCC 29220]
          Length = 308

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 6/167 (3%)

Query: 104 SRIDCLSGL-----LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S ID L+GL     L+ S     + +    L I+  DID FK +ND +GH VGD V+  L
Sbjct: 129 SNIDVLTGLPGRRMLDESFDQQLIDAEPLNLYILLLDIDRFKHVNDTYGHLVGDVVLRAL 188

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +   +          R GGEEF       ++++A      L +++   +I  + G  I I
Sbjct: 189 ASNFLAWTRYDEVAYRYGGEEFIIIIRTKTDEQARQAGLRLCQLVGQKKIPYADG-EIAI 247

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           T++AGI      E + T + RAD+A+Y  K+SGRNR +   + E  T
Sbjct: 248 TVTAGITRAQRDEKLDTALGRADRAMYQGKQSGRNRCMFMDEREQIT 294


>gi|53721830|ref|YP_110815.1| hypothetical protein BPSS0805 [Burkholderia pseudomallei K96243]
 gi|52212244|emb|CAH38266.1| putative membrane protein [Burkholderia pseudomallei K96243]
          Length = 688

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 4/127 (3%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186
           KL+I+F D+D FK IND+ GHP GD+V+   S +L+        V RLGG+EF       
Sbjct: 288 KLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESV 347

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245
           SS+ EAA +A ++ + +   + N   G ++ +T S GIA      +   T++  AD A+Y
Sbjct: 348 SSDDEAARVARNVLERMRKGRWN--DGQALQVTPSIGIALYPKDGDTADTLLRHADAAMY 405

Query: 246 VAKKSGR 252
            AK+SGR
Sbjct: 406 AAKRSGR 412


>gi|95930085|ref|ZP_01312824.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95133779|gb|EAT15439.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 423

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 93/192 (48%), Gaps = 14/192 (7%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAF-------IS 120
           L  V +   I  LL    G  L  L    NR + +LS  D L+GL N   F       I+
Sbjct: 231 LGFVAVYFMIRALLVKKDGQDL--LLEQQNRELDRLSTTDPLTGLWNRLRFNHETPRYIA 288

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              S  E L++   DID+FK+IND FGH +GD+V+   S  L        F+ RLGGEEF
Sbjct: 289 QAQSRKESLAMAVIDIDHFKKINDTFGHSIGDEVLKIFSAYLQEKCRKTDFLARLGGEEF 348

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                  ++ E   L +  ++++E   I +    ++ +T S G+A     E  S    RA
Sbjct: 349 VILTPAITKTE---LEHFCQRLLEG-MIVVEYPHNLKLTASVGVALYQDGEDQSLFFSRA 404

Query: 241 DQALYVAKKSGR 252
           D+A+Y +K+ GR
Sbjct: 405 DRAMYESKEKGR 416


>gi|126442988|ref|YP_001062179.1| GGDEF domain/EAL domain-containing protein [Burkholderia
           pseudomallei 668]
 gi|126222479|gb|ABN85984.1| ggdef domain/eal domain protein [Burkholderia pseudomallei 668]
          Length = 688

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 4/127 (3%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186
           KL+I+F D+D FK IND+ GHP GD+V+   S +L+        V RLGG+EF       
Sbjct: 288 KLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESV 347

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245
           SS+ EAA +A ++ + +   + N   G ++ +T S GIA      +   T++  AD A+Y
Sbjct: 348 SSDDEAARVARNVLERMRKGRWN--DGQALQVTPSIGIALYPKDGDTADTLLRHADAAMY 405

Query: 246 VAKKSGR 252
            AK+SGR
Sbjct: 406 AAKRSGR 412


>gi|167741053|ref|ZP_02413827.1| hypothetical protein Bpse14_23506 [Burkholderia pseudomallei 14]
 gi|167818235|ref|ZP_02449915.1| hypothetical protein Bpse9_24066 [Burkholderia pseudomallei 91]
 gi|167921323|ref|ZP_02508414.1| hypothetical protein BpseBC_22428 [Burkholderia pseudomallei
           BCC215]
 gi|254182865|ref|ZP_04889458.1| diguanylate cyclase [Burkholderia pseudomallei 1655]
 gi|184213399|gb|EDU10442.1| diguanylate cyclase [Burkholderia pseudomallei 1655]
          Length = 441

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 11/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           + LF ++  + + +  D L+ + N S F             +N  L++V  D+D+FKQ N
Sbjct: 254 RRLFDAHASLMRTASHDALTMVYNRSYFNEQFERAFHYARRHNTPLALVMVDVDHFKQYN 313

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD  +A ++  L  V G    FV R GGEEFA    G+ E+ AA +A   R+ 
Sbjct: 314 DTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPGADERGAATIAERARQA 373

Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
           +E  +I   + P  ++T+SAG A       E    +I  AD ALY AK  GRN
Sbjct: 374 VERLRIAADTAPG-YVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRN 425


>gi|313683084|ref|YP_004060822.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM
           16994]
 gi|313155944|gb|ADR34622.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM
           16994]
          Length = 551

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 78/162 (48%), Gaps = 11/162 (6%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL N           I+    Y+  LSI+  D+D+FK +ND +GH  GD V
Sbjct: 393 ELAITDRLTGLYNRLKLDEVLNYEIAQTSRYDTPLSIIIIDVDHFKNVNDTYGHQTGDMV 452

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  L          GR GGEEF      ++   A   A  +R  IEN   ++    
Sbjct: 453 LKEVAQILRSCSRKSDTSGRWGGEEFLIILPNTNLTGALEAAEKIRTAIENYPFSVVG-- 510

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               T S G++E    E   + I RADQALY AK  GRN+VV
Sbjct: 511 --QKTASLGVSEFLANENEDSFIERADQALYRAKSGGRNQVV 550


>gi|126651346|ref|ZP_01723553.1| two-component sensor histidine kinase [Bacillus sp. B14905]
 gi|126591875|gb|EAZ85958.1| two-component sensor histidine kinase [Bacillus sp. B14905]
          Length = 638

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 89/183 (48%), Gaps = 22/183 (12%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGL-----LNHSAFISSLGSYNEKLSIVFFDIDYF 139
           I+ SIL+       ++ ++  +D L+ L     L+H  F+     Y++    +  DID F
Sbjct: 465 IANSILR------TQLQEMVDLDHLTKLYARSYLDH--FVEKSLEYDQSGMFLLIDIDNF 516

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND +GH VGDK++  ++ QL    G+     R GGEE +      SE+EA  LA  +
Sbjct: 517 KRINDTYGHQVGDKILMQIAVQLRETIGSRGICARWGGEEMSVYVPNISEKEALELAAAI 576

Query: 200 RKIIENSQINISSGPSIHITISAG-IAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
            ++       I S     +TISAG I       P   ++   AD ALY AK SG+NR   
Sbjct: 577 VEV-------IPSATDPQVTISAGLITWNDQDRPAFQSVFLHADTALYEAKNSGKNRFCI 629

Query: 258 FSD 260
             D
Sbjct: 630 HGD 632


>gi|26986959|ref|NP_742384.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida KT2440]
 gi|24981572|gb|AAN65848.1|AE016213_4 sensory box protein [Pseudomonas putida KT2440]
          Length = 328

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 78/130 (60%), Gaps = 4/130 (3%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+ +  DID FK+IND++GH  GD+V+  ++D    V       GR+GGEEFAA   G +
Sbjct: 199 LAFLLLDIDDFKRINDSYGHQEGDQVLQHIADSGKAVLRRGDLFGRIGGEEFAAVFPGCT 258

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKE-PISTIIYRADQALYV 246
            Q A  +A  L++ I++  ++ S G   + +T+S G+     ++  + ++  RAD A+Y 
Sbjct: 259 AQIAEQIAERLQRQIQH--LSFSHGQQTYGVTVSQGLTGLTDEDVALDSLYARADAAMYQ 316

Query: 247 AKKSGRNRVV 256
           AK+ G+N++V
Sbjct: 317 AKRQGKNQIV 326


>gi|332527977|ref|ZP_08404011.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2]
 gi|332112551|gb|EGJ12344.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2]
          Length = 229

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 19/168 (11%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+GL N  AF       I  +    E   ++  DID+FK +ND  GH  GD+VI
Sbjct: 40  LSSRDALTGLANRRAFQLALEREIDRVARSGEPALMLVADIDHFKLVNDRHGHAAGDEVI 99

Query: 156 ----AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
               A L+D +      PM  V R+GGEEFA             +A  +R+ +E   +++
Sbjct: 100 RAVAAVLADSV-----RPMDLVARVGGEEFAIILPNCPHTFGLTVAERIRQKVERMSVSV 154

Query: 211 SSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +G ++ +++S G   A +  +   +  + RAD  LY AK +GRNRV+
Sbjct: 155 GNGRALSVSVSVGGAFAPQWVRSTPALWLERADLQLYAAKAAGRNRVL 202


>gi|300856764|ref|YP_003781748.1| putative membrane-bound protein [Clostridium ljungdahlii DSM 13528]
 gi|300436879|gb|ADK16646.1| putative membrane-bound protein with a GGDEF domain [Clostridium
           ljungdahlii DSM 13528]
          Length = 395

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 89/173 (51%), Gaps = 18/173 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
            ++ +LS+ID L+G+ N   F  ++ +  ++       LS++  DID+FK  ND++GH  
Sbjct: 225 QKLEKLSQIDSLTGIFNRFVFDKTIEAEWDRCKRYFIPLSLIMIDIDFFKAFNDSYGHQA 284

Query: 151 GDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI- 208
           GD  +  +S  L      +   V R GGEEFA       ++ A   A  LRK +E   I 
Sbjct: 285 GDDCLRQVSRVLSSSARRSSDTVARYGGEEFAVVLTHMEKESALEFAEQLRKKVEQLAIP 344

Query: 209 NISSGPSIHITISAGIAERCHKEP-----ISTIIYRADQALYVAKKSGRNRVV 256
           ++ S  S +ITIS GI   C   P     I   I  AD+ALY AKK  RN+VV
Sbjct: 345 HMYSSISNYITISLGI---CTVIPSDMLSIEQFIKTADEALYEAKKC-RNKVV 393


>gi|86751742|ref|YP_488238.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
 gi|86574770|gb|ABD09327.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
          Length = 904

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 57/165 (34%), Positives = 84/165 (50%), Gaps = 16/165 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +I+ L+  D L+ L N S F   L      G  +   ++++ DID FK IND  GHP+GD
Sbjct: 473 KIAYLAHYDSLTDLPNRSLFRQRLERELHPGRGSAACTLLYIDIDEFKSINDTLGHPIGD 532

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQI-- 208
           +++  ++ +L    G   FV RLGG+EFA  A +   S+Q  A+    L+ I        
Sbjct: 533 ELLKQVAVRLRECVGASDFVARLGGDEFAVIATSAADSDQATALAERILQTIRAPYHCLG 592

Query: 209 -NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            ++S+  SI I I+ G       E I  +I  AD A+Y AK  GR
Sbjct: 593 HHLSTDASIGIAIAPG-----DGEDIDQLIKNADLAMYSAKAGGR 632


>gi|28869781|ref|NP_792400.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28853026|gb|AAO56095.1| GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 528

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 86/170 (50%), Gaps = 11/170 (6%)

Query: 107 DCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L      +  E+  LS++  D D+FK+ ND+FGH  GD+ +  L+
Sbjct: 336 DKLTGLANRRRFDQFLDVEFKRARRERNMLSLILMDADHFKRYNDHFGHLAGDECLVALA 395

Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +      P  V  R GGEE A    G+ E  A  +A ++ + I + QI   + P   +
Sbjct: 396 RLVEQCIRRPGDVAARYGGEEIAVVLPGTDEASARQVAENILQAIRDEQITHPASPFGIV 455

Query: 219 TISAGIAERC-HKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           T+S G+A        IS   +I  AD+ALY AK  GRNRV   S+I  NT
Sbjct: 456 TVSLGVATVVGSNRQISQRGLIELADRALYAAKSQGRNRVNVASEIAFNT 505


>gi|332991788|gb|AEF01843.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Alteromonas sp. SN2]
          Length = 468

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 9/166 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ +L+  D L+ + N  AF  +L         +   L I   D+D+FK++ND FGH  G
Sbjct: 289 KLEKLAYFDPLTDIPNRRAFEEALDKSTHFAHRHGYSLLIGIADVDHFKKLNDTFGHAFG 348

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQIN 209
           D V+  ++  +   F     +GR+GGEEFA   +     EA  +   LRK +E  +S + 
Sbjct: 349 DDVLVAVAKSMKQFFRQEDGIGRVGGEEFAFCMVLPGSHEAIDILERLRKRVELISSSLP 408

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              G  + I+I A      +      ++  AD+ALY AK+ GRNRV
Sbjct: 409 ALKGYDVTISIGAYYVSGVNPSETKEMVSIADEALYRAKREGRNRV 454


>gi|325124519|gb|ADY84042.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 684

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 95/177 (53%), Gaps = 12/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +   ++ LS  D L+ L N           +S     ++K++ ++ D+D FK +ND
Sbjct: 246 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSDHRYKDQKIAFLYIDLDRFKSVND 305

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH VGD+++  ++++L         + R+GG+EF   A  ++  EA ILA  + ++I+
Sbjct: 306 AFGHHVGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLIAENTNADEAVILAEKVLQLIQ 365

Query: 205 NS-QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            S QI   SG  I+I+ S G+A    H + +  ++  AD A+ ++K+ GRN    FS
Sbjct: 366 ESYQI---SGKEINISASLGVALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTIFS 419


>gi|291295409|ref|YP_003506807.1| diguanylate cyclase and serine/threonine protein kinase with TPR
           repeats [Meiothermus ruber DSM 1279]
 gi|290470368|gb|ADD27787.1| diguanylate cyclase and serine/threonine protein kinase with TPR
           repeats [Meiothermus ruber DSM 1279]
          Length = 1104

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 10/159 (6%)

Query: 105 RIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           + D L+G L+ +A   +L +         E+ +++  D+D+FK IND FGHP GD ++  
Sbjct: 5   QFDPLTGALSRAALFPTLEATLHAAQLTGEETALLVLDLDHFKSINDAFGHPRGDAILRE 64

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           L +++     T   + R GG+EF     G+   +AA+LA  L  ++++     +  P + 
Sbjct: 65  LVERIQGAIRTGDLLFRYGGDEFVLLLPGTEHTQAALLAERLLSVVQSRP--FAGDPPLS 122

Query: 218 ITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255
           +T+S G+A      +   T+  RADQ L  AK+ GR R+
Sbjct: 123 LTLSIGLATSPAGADSPETLFARADQNLLAAKRQGRARL 161


>gi|146311663|ref|YP_001176737.1| diguanylate cyclase [Enterobacter sp. 638]
 gi|145318539|gb|ABP60686.1| diguanylate cyclase [Enterobacter sp. 638]
          Length = 351

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 107/195 (54%), Gaps = 13/195 (6%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSL 122
           +L +I+I I + L  ++ SI   L +    + +++ +D L  + N           + +L
Sbjct: 158 TLPLIAIYI-IALSVMTDSIAIRLRVKSRELERIAMMDPLLDIANRRLLEKRIEKELKTL 216

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
              + + +++F DID FK++ND FGH VGD ++A +S+ L +         RLGG+EF  
Sbjct: 217 QQASRESALMFIDIDNFKEVNDRFGHKVGDTLLATVSEILHLATRQTDTPARLGGDEFVI 276

Query: 183 AALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHK-EPISTIIYRA 240
               +S +EA ++A+   +I+E + + +  +  +++ T+S GIA    + E ++  +  A
Sbjct: 277 LLPNTSIEEAHVVAS---RIMEAAAVMDDVAEEAVNCTLSIGIAGATREMENVTDWLQAA 333

Query: 241 DQALYVAKKSGRNRV 255
           D ALY AK+ G+NR+
Sbjct: 334 DTALYQAKRGGKNRI 348


>gi|300899213|ref|ZP_07117488.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1]
 gi|300357169|gb|EFJ73039.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1]
          Length = 251

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 93/191 (48%), Gaps = 15/191 (7%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           T+ L+  Y+   ++  +++  + +   +  D L+ L N  A             ++    
Sbjct: 58  TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 117

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S 
Sbjct: 118 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 177

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-----EPISTIIYRADQAL 244
            EAA +A  +R  +   ++ I+   +I I+ S G++          E   ++ YR    L
Sbjct: 178 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQFQSLAYR---RL 234

Query: 245 YVAKKSGRNRV 255
           Y+AK++GRNRV
Sbjct: 235 YLAKQAGRNRV 245


>gi|294010778|ref|YP_003544238.1| putative diguanylate cyclase [Sphingobium japonicum UT26S]
 gi|292674108|dbj|BAI95626.1| putative diguanylate cyclase [Sphingobium japonicum UT26S]
          Length = 291

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 90/184 (48%), Gaps = 19/184 (10%)

Query: 87  GSILKELF--------ISYNRISQL---SRIDCLSGLLNHSAFISSLGSY---NEKLSIV 132
           G I+  LF         +  RI +L   +  D L+G+ N   F++ L +      +  I 
Sbjct: 100 GDIISRLFHGVRGAAVATRERIDELNIAANEDALTGIANRRGFLAQLDALPLARRRGCIA 159

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FKQ+ND  GH  GD+V+A  + +L         + R GGEEFA     + E EA
Sbjct: 160 IIDLDHFKQVNDMLGHDEGDRVLADFASRLSSQTRRIDIIARWGGEEFAIFYQDAIEDEA 219

Query: 193 AI-LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           +  LA    ++       +   P   IT SAG+       P+ T I +AD+ALY AKKSG
Sbjct: 220 SWSLARIAERMRREPVGMVGDQP---ITFSAGLCA-WRGGPVMTAIGQADEALYRAKKSG 275

Query: 252 RNRV 255
           R+R+
Sbjct: 276 RDRI 279


>gi|292489002|ref|YP_003531889.1| protein YhjK [Erwinia amylovora CFBP1430]
 gi|291554436|emb|CBA21917.1| Protein yhjK [Erwinia amylovora CFBP1430]
          Length = 537

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 84/163 (51%), Gaps = 9/163 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+   ++ D L+GLLN     + L    S  +  +++  DID FK +ND FGH  GD VI
Sbjct: 361 RLKSEAQTDPLTGLLNRRGLDAVLDYFLSTGQPFALLALDIDRFKGVNDAFGHAAGDTVI 420

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++ QL +       + R GGEEF     G+    A ++A  +RK IE  QI+      
Sbjct: 421 KTVAQQLGLGARQSDVLCRNGGEEFLMILPGADRDRALMIAERVRKRIEQFQIDAIG--- 477

Query: 216 IHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            ++TIS GI+      +  +     +AD+ALY AK +GRN VV
Sbjct: 478 -NVTISIGISFWSSDSENDMHDAFGQADEALYRAKNTGRNCVV 519


>gi|170690417|ref|ZP_02881584.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia graminis C4D1M]
 gi|170144852|gb|EDT13013.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia graminis C4D1M]
          Length = 667

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 95/182 (52%), Gaps = 11/182 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSL---GSYNEKLSIVFFDIDYF 139
           SG+ + E  ++  R+ QL+  D L+GL N +A   +I +     +  E + ++F D+D F
Sbjct: 220 SGTDITEERLAQERLRQLANTDSLTGLPNRNAIQDYIRTAIEEAAPGESVGVLFLDLDNF 279

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND++GH  GD++I  +S  + +       + RLGG+EF   A   +  E    A   
Sbjct: 280 KKVNDHYGHVFGDRLIRDVSAAIGMCLNEGDTLARLGGDEFIVLAAKGTAHELEATA--- 336

Query: 200 RKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++I+E  +   S G   ++   S GIA    H + + ++I  AD A+YVAK  G+     
Sbjct: 337 QRILERMRTPFSLGLVEVYTGCSIGIARYPEHGDNLESLIRSADTAMYVAKDEGKRTHRV 396

Query: 258 FS 259
           FS
Sbjct: 397 FS 398


>gi|89092549|ref|ZP_01165502.1| GGDEF protein [Oceanospirillum sp. MED92]
 gi|89083061|gb|EAR62280.1| GGDEF protein [Oceanospirillum sp. MED92]
          Length = 259

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 116/243 (47%), Gaps = 13/243 (5%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL 81
           +  H   + +++ F   IAT ++I  + +          L+ I   N +L  + + I L+
Sbjct: 11  WREHGTRVAWAMGFIGIIATSLWILRVEM--AAYMQSNELDLIAASNFNLYALYL-IWLI 67

Query: 82  LGYISGSILKELFISYN--RISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDI 136
                GS+L  L I+ N  +I  LS  D L+G  N          +   +E  ++V  DI
Sbjct: 68  AICFQGSMLF-LLITRNARKIEALSTKDFLTGAHNRLGLEKVWQRILDTHETFAVVILDI 126

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND  GH VGD+++  +  +   V      + R GGEEF     G+  ++A   A
Sbjct: 127 DHFKKINDTHGHDVGDQILKLVVARTHGVLRQEDKLARFGGEEFVIILPGADVEQAVRFA 186

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAER---CHKEPISTIIYRADQALYVAKKSGRN 253
             +R  IE     +    +I +T S G+A +     +  +  ++  AD+ALY AK +GRN
Sbjct: 187 ERVRVAIETDHFQLRD-VAISVTASFGVAGQELVGDRGDLYELVRVADEALYHAKGNGRN 245

Query: 254 RVV 256
           RVV
Sbjct: 246 RVV 248


>gi|332526042|ref|ZP_08402180.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2]
 gi|332109885|gb|EGJ10513.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2]
          Length = 533

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 7/165 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+++ +R D L+G+ N       L         +   L++   DID FK+IND  GH  G
Sbjct: 362 RLAEQTRTDPLTGVANRRQLDERLRDEYARAARHGHALAVAMIDIDDFKRINDRHGHAAG 421

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++  L         V R GGEEF    + +S  +A      +R  +E    +  
Sbjct: 422 DAVLREVATLLRAHCRDIDLVARYGGEEFCVVFVEASANDALRACEAMRAAVEAHDWSAV 481

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +     +T+S G+AER   +    ++  AD  LY AK+SG+NRVV
Sbjct: 482 APELQRVTLSTGLAEREEADGRQALVAAADARLYEAKRSGKNRVV 526


>gi|310644494|ref|YP_003949253.1| diguanylate cyclase [Paenibacillus polymyxa SC2]
 gi|309249445|gb|ADO59012.1| Diguanylate cyclase [Paenibacillus polymyxa SC2]
          Length = 363

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 108/234 (46%), Gaps = 21/234 (8%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN---- 98
           + I N+F   I   P      I ++NL  V+    +   +  + G +L  +  S N    
Sbjct: 133 LMIMNVFALGIIFCPLM----INLKNLDDVLHVYPLQFFISMVGGCLLYLIAESINTSNE 188

Query: 99  ---RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148
              R+   S  D L+ L N      SL          +E LS++  DID+FK++ND +GH
Sbjct: 189 LLLRLEHTSYTDHLTNLSNRRQLEFSLEEQLPQARQRHEHLSVLVLDIDHFKEVNDTYGH 248

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+  L   L+        V R GGEEF       + ++A  +AN +   +   + 
Sbjct: 249 AAGDAVLRQLGQILMEKCRANDVVTRSGGEEFTVLLPNCAFRQALRIANQILSGVNQHEF 308

Query: 209 NISSGPSIHITISAGIAE-RCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFS 259
            ++ G  + +T+S G+       E +S   ++ +AD+ALY AKK+GRNRV  + 
Sbjct: 309 ILADGLVLKVTVSIGVTTFPGTGEDMSGAALLEQADKALYEAKKAGRNRVCSYE 362


>gi|294665593|ref|ZP_06730873.1| sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
            10535]
 gi|292604642|gb|EFF48013.1| sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
            10535]
          Length = 1065

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 8/174 (4%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            +L  L I  +   + +  D L+GL N   F       IS        L +   DID+FK+
Sbjct: 890  LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSARPLVLAILDIDHFKR 949

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            IND++ H  GD V+  +   L           RLGGEEFA     ++  EA  L   +R 
Sbjct: 950  INDHYSHASGDAVLHEVGVLLTAAARASDLPARLGGEEFALLLADTTLDEANALCLRIRA 1009

Query: 202  IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  +++ N +S   + +T SAG+A     +  S+++ RAD ALY AK +GR+R+
Sbjct: 1010 LF-HARHNWASVEGLQVTFSAGVAALRDDDTGSSLMQRADHALYEAKSAGRDRI 1062


>gi|294626314|ref|ZP_06704916.1| sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
            11122]
 gi|292599315|gb|EFF43450.1| sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
            11122]
          Length = 1065

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 8/174 (4%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            +L  L I  +   + +  D L+GL N   F       IS        L +   DID+FK+
Sbjct: 890  LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSARPLVLAILDIDHFKR 949

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            IND++ H  GD V+  +   L           RLGGEEFA     ++  EA  L   +R 
Sbjct: 950  INDHYSHASGDAVLHEVGVLLTAAARASDLPARLGGEEFALLLADTTLDEANALCLRIRA 1009

Query: 202  IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  +++ N +S   + +T SAG+A     +  S+++ RAD ALY AK +GR+R+
Sbjct: 1010 LF-HARHNWASVEGLQVTFSAGVAALRDDDTGSSLMQRADHALYEAKSAGRDRI 1062


>gi|225848060|ref|YP_002728223.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644571|gb|ACN99621.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 638

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 11/173 (6%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
            + S ID L+GL N + ++  + + N K   ++  D+D+FK+IND +GH VGD V+  ++
Sbjct: 223 KKRSLIDSLTGLYNRN-YLEEIENKNLKDFVVIVADVDFFKKINDTYGHLVGDNVLKTVA 281

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-----ANDLRKIIENSQINISSGP 214
           + +         V R GGEEF    + + E+    L     A  +RK +EN +I I+   
Sbjct: 282 ETIKKNVRENNIVIRYGGEEF--LIILNKERSVDNLNYINVAERIRKAVENLKIKINEND 339

Query: 215 SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            +  T+S GI     K + +   I +AD ALY AK  GRNR+  + D EN + 
Sbjct: 340 YLKTTLSVGIFLDTDKIKTLQEAIKKADVALYKAKTKGRNRIEIY-DEENQSS 391


>gi|117617601|ref|YP_858659.1| GAF domain/GGDEF domain/EAL domain-containing protein [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117559008|gb|ABK35956.1| gaf domain/GGDEF domain/eal domain protein [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 761

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 96/169 (56%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++ ++QL     L   LNH+  ++    Y     S++F D+D+FKQ+ND  GH  GD+++
Sbjct: 333 HDPLTQLPNRALLMNHLNHA--MTHFHRYKSPGFSLIFIDVDHFKQVNDTLGHSAGDQLL 390

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS---S 212
             +S +L         V RLGG+EF    L +S+ E  I +  L +II  S+++      
Sbjct: 391 KEMSRRLQTCIRQNDMVARLGGDEF-VIYLDNSKTEEDI-SPVLNRII--SRLSYPFRLM 446

Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           G  + IT+S G+A    +   IS ++++AD A+Y AK++GR+R+V +S+
Sbjct: 447 GNELGITVSLGVASVSEQTSDISQLLHQADLAMYQAKRNGRSRIVSYSE 495


>gi|327537828|gb|EGF24532.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Rhodopirellula baltica WH47]
          Length = 875

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 81/164 (49%), Gaps = 10/164 (6%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+G LN  AF       ++   +    LS    DID+FK +ND +GH  GD+V+
Sbjct: 387 LATRDALTGCLNRRAFFERMEEMLTDYRNAGRPLSCFMVDIDHFKSVNDTYGHHAGDEVL 446

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +S  L  +      V R GGEEF     G    EA   +   R  + N  I +    S
Sbjct: 447 RKVSKVLRDLHEENQVVCRYGGEEFCVMLPGHDLDEAMEQSERTRLAVMN--IRLEDPES 504

Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + +T S G++E +     + ++I +AD  LYVAK+ GRN+ V F
Sbjct: 505 LRLTASLGVSELKFGATDVQSLINQADSCLYVAKRGGRNQSVAF 548


>gi|295095931|emb|CBK85021.1| diguanylate cyclase (GGDEF) domain [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 349

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 82/162 (50%), Gaps = 5/162 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +R+  L+  D L+   N  A    + +     ++ +++  D+DYFK  ND +GH  GD  
Sbjct: 185 SRLDALAHQDPLTKTANRRAMELVLENAVEQGKRFAVLMLDVDYFKLYNDTYGHQAGDAC 244

Query: 155 IAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212
           +A +++ L     TP   V R GGEEF        E  A  +A  ++  + N+ I + +S
Sbjct: 245 LARVAEVLNTSVRTPEDVVSRYGGEEFVVILFDCEESVAEKVAARIQAGLRNAAIPHSAS 304

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             S ++T S GIA          II RAD ALY AK++GRNR
Sbjct: 305 KVSEYVTASMGIAGYTAGLAGPEIIARADAALYRAKEAGRNR 346


>gi|254820203|ref|ZP_05225204.1| diguanylate cyclase with PAS/PAC sensor [Mycobacterium
           intracellulare ATCC 13950]
          Length = 597

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 10/168 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +L+R D L+GL+N +  ++ L +           + ++F D+D+FK IND +GH  
Sbjct: 431 QQLERLARFDTLTGLVNRAEALARLDAALRQPRPPETHVGVLFCDVDHFKAINDRWGHGT 490

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQIN 209
           GD V+A ++ ++         VGR GG+E      G  S  E A +A  +R+ +    I+
Sbjct: 491 GDVVLATVAARIRASVRREDTVGRTGGDEMLILLPGVRSADELAQIAEKIRRRVAEP-IH 549

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + SG +I  T+S G       E +  +  RAD+A+Y AK   RN VV 
Sbjct: 550 V-SGNTIGATLSIGATLALPAESVDAVTARADEAMYRAKSGDRNAVVA 596


>gi|229589847|ref|YP_002871966.1| putative GGDEF domain membrane protein [Pseudomonas fluorescens
           SBW25]
 gi|229361713|emb|CAY48594.1| putative GGDEF domain membrane protein [Pseudomonas fluorescens
           SBW25]
          Length = 348

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 9/169 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNF 146
           L+ + +  +   +L+  D L+ +LN  AF+   S L +  +    +  DID FK  ND F
Sbjct: 168 LRSVLMVESEFRELAETDYLTSILNRRAFMESFSKLIAAGDTGYFMMLDIDSFKLKNDQF 227

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+++  ++  L    G+  F GR+GGEEF    +G     A   A  L + I + 
Sbjct: 228 GHDVGDRILCAMAACLKSTPGSHSF-GRIGGEEFGVLLVGDDPGLATDYALRLLQAIRS- 285

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               S  P    T SAG+        +S ++ RAD+ LY AK +G++RV
Sbjct: 286 ----SVAPPHDYTCSAGMTHFTLGADMSAVLKRADRNLYTAKGNGKDRV 330


>gi|297578955|ref|ZP_06940883.1| GGDEF family protein [Vibrio cholerae RC385]
 gi|297536549|gb|EFH75382.1| GGDEF family protein [Vibrio cholerae RC385]
          Length = 443

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 15/166 (9%)

Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+G+LN  AF   L          N KL+++FFD+D FK+IND  GH VGD V+
Sbjct: 269 LSERDSLTGILNRRAFKQQLSHALIKAKRSNMKLALLFFDLDKFKEINDTKGHEVGDLVL 328

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGP 214
             ++ +L        F GRLGG+EF         Q+ + + N   +++E  Q  +  +  
Sbjct: 329 QEIAQRLKGSIRESDFCGRLGGDEFVVCL--DLLQDHSGVINKAYQMLEKLQKPLQLNQE 386

Query: 215 SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S+ I +S G+A   E+  + P   ++  AD+A+Y AK    N V C
Sbjct: 387 SLEIGVSIGVALYPEQATQVP--ELLRIADEAMYTAKHQSGNTVYC 430


>gi|53721172|ref|YP_110157.1| hypothetical protein BPSS0136 [Burkholderia pseudomallei K96243]
 gi|237507299|ref|ZP_04520014.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346]
 gi|254189596|ref|ZP_04896106.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237]
 gi|254195500|ref|ZP_04901928.1| diguanylate cyclase [Burkholderia pseudomallei S13]
 gi|254299655|ref|ZP_04967104.1| diguanylate cyclase [Burkholderia pseudomallei 406e]
 gi|52211586|emb|CAH37581.1| putative membrane protein [Burkholderia pseudomallei K96243]
 gi|157809610|gb|EDO86780.1| diguanylate cyclase [Burkholderia pseudomallei 406e]
 gi|157937274|gb|EDO92944.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237]
 gi|169652247|gb|EDS84940.1| diguanylate cyclase [Burkholderia pseudomallei S13]
 gi|234999504|gb|EEP48928.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346]
          Length = 462

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 11/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           + LF ++  + + +  D L+ + N S F             +N  L++V  D+D+FKQ N
Sbjct: 275 RRLFDAHASLMRTASHDALTMVYNRSYFNEQFERAFHYARRHNTPLALVMVDVDHFKQYN 334

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD  +A ++  L  V G    FV R GGEEFA    G+ E+ AA +A   R+ 
Sbjct: 335 DTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPGADERGAATIAERARQA 394

Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
           +E  +I   + P  ++T+SAG A       E    +I  AD ALY AK  GRN
Sbjct: 395 VERLRIAADTAPG-YVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRN 446


>gi|32471539|ref|NP_864532.1| hypothetical protein RB1656 [Rhodopirellula baltica SH 1]
 gi|32443380|emb|CAD72213.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
          Length = 875

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 81/164 (49%), Gaps = 10/164 (6%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+G LN  AF       ++   +    LS    DID+FK +ND +GH  GD+V+
Sbjct: 387 LATRDALTGCLNRRAFFERMEEMLTDYRNAGRPLSCFMVDIDHFKSVNDTYGHHAGDEVL 446

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +S  L  +      V R GGEEF     G    EA   +   R  + N  I +    S
Sbjct: 447 RKVSKVLRDLHEENQVVCRYGGEEFCVMLPGHDLDEAMEQSERTRLAVMN--IRLEDPES 504

Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + +T S G++E +     + ++I +AD  LYVAK+ GRN+ V F
Sbjct: 505 LRLTASLGVSELKFGATDVQSLINQADSCLYVAKRGGRNQSVAF 548


>gi|298290752|ref|YP_003692691.1| diguanylate cyclase with PAS/PAC sensor [Starkeya novella DSM 506]
 gi|296927263|gb|ADH88072.1| diguanylate cyclase with PAS/PAC sensor [Starkeya novella DSM 506]
          Length = 483

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 93/175 (53%), Gaps = 12/175 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           +EL  +  R+++LS +D L+ L N   F S L       G +   L+++  D+D FK  N
Sbjct: 274 RELIEANRRLTELSEMDPLTELPNRRKFDSVLTREIGRTGRHKPSLALMMIDVDGFKHYN 333

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+ +  +++ L      T   + R GGEEFA     + E +A ++A  + + 
Sbjct: 334 DLYGHIEGDECLRKVAETLRHCARRTGDLITRYGGEEFAVILADTDENDAVMVATSMLRA 393

Query: 203 IENSQINISSGPSIHITISAGIA--ERCHKEPIST--IIYRADQALYVAKKSGRN 253
           + + ++  +  P   +T+S GIA  E  + +  +   ++  AD+ALY AK++GRN
Sbjct: 394 VRDLRVAHAGSPYGIVTVSVGIAIHEAANHDTTAPPVLVASADRALYAAKQAGRN 448


>gi|322421600|ref|YP_004200823.1| diguanylate cyclase [Geobacter sp. M18]
 gi|320127987|gb|ADW15547.1| diguanylate cyclase [Geobacter sp. M18]
          Length = 428

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 103/218 (47%), Gaps = 25/218 (11%)

Query: 64  ILVENLSLVIISITI-----SLLLGYISGSILKELFISY-NR--------ISQLSRIDCL 109
           IL++N   ++ +I I     SL+  Y+    L    + Y NR        + +LS  D L
Sbjct: 191 ILIQNTFSIVATIIIGAFSNSLMENYLRRDFLNANLLEYENRQLQKATLELRRLSISDAL 250

Query: 110 SGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           + L N   F   L             +S+V  DID+FK  NDN+GH  GD  +  +++++
Sbjct: 251 TNLGNRRHFEVMLDQEWLRATRSESPISLVLLDIDFFKNFNDNYGHQAGDSCLKIVAEEI 310

Query: 163 VVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITI 220
                 P     R GGEEF     G    +AA +A   R+ +E+ +I +  S  S  +T+
Sbjct: 311 GGFARRPADTAARYGGEEFVLLLPGIDLADAATIAETCRQAVESLEIPHCHSAASNVVTV 370

Query: 221 SAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
           SAG+A        +   ++  AD+ALY AK  GRNRV+
Sbjct: 371 SAGVASMVPDRDANRGQLVEAADKALYRAKLKGRNRVI 408


>gi|126665288|ref|ZP_01736270.1| hypothetical protein MELB17_21885 [Marinobacter sp. ELB17]
 gi|126629916|gb|EBA00532.1| hypothetical protein MELB17_21885 [Marinobacter sp. ELB17]
          Length = 284

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 19/169 (11%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+ ID L+G +N  A  S + +        N + ++V  D+D+FK +ND +GH VGDKV+
Sbjct: 123 LNTIDALTGAMNRRALESDIAAALSNAERSNVQQALVMLDLDFFKVVNDKYGHDVGDKVL 182

Query: 156 AFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
                +LV +    +  G    R GGEEFA    G   Q+     ++L++ I+N    + 
Sbjct: 183 ----KKLVTIVTNNIRKGDRLYRYGGEEFALLVYGVDSQQQRAFISNLQEAIKN---QLK 235

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  +  +T S G+A         + +  AD ALY+AK+ GR+  V FSD
Sbjct: 236 TPDAAEVTASFGVAAWVPGTTADSWLKCADTALYLAKERGRDCAV-FSD 283


>gi|71906426|ref|YP_284013.1| GGDEF [Dechloromonas aromatica RCB]
 gi|71846047|gb|AAZ45543.1| GGDEF protein [Dechloromonas aromatica RCB]
          Length = 585

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 80/164 (48%), Gaps = 8/164 (4%)

Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           S L R D L+G LN            +    ++  L +   DID FK++ND+ GH  GD+
Sbjct: 422 SDLVRHDQLTGTLNRRGLEEIFTKEAARATRHDTALCVALIDIDNFKKLNDSMGHDTGDQ 481

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  L+            V R GGEEF      +S  +AAI    L++ +   +  +   
Sbjct: 482 ALIHLATICRETLRPQDTVARYGGEEFIILLPETSLDDAAIALTRLQREL-TKKFFLHGN 540

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             + IT SAG+ +    +  +T+I RAD+A+Y AKK+G+NRV  
Sbjct: 541 EKVLITFSAGVTQMLPNDTQATVIKRADEAMYQAKKTGKNRVTT 584


>gi|313682795|ref|YP_004060533.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM
           16994]
 gi|313155655|gb|ADR34333.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM
           16994]
          Length = 476

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 10/166 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +I + +  D L+ L N   F   +         + + K SI+ FD+D FK++ND  GH  
Sbjct: 302 KIEKQAITDYLTDLYNRRYFTGRMEEEIAKTKRNKHAKTSIMMFDLDKFKRVNDTMGHLA 361

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VI   +D +          GR+GGEEFA     +  + AAI A  +R+ + N+ + +
Sbjct: 362 GDAVIKKFADIIKNNLRVSDIAGRIGGEEFALILPDTDIKSAAITAERIREEVSNTTV-V 420

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRV 255
             G  IH T+S G+      +  +  ++ RAD ALY AK+ GRN V
Sbjct: 421 YEGKFIHFTVSIGLTALSPLDLSADCVFSRADIALYSAKEHGRNNV 466


>gi|298242665|ref|ZP_06966472.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Ktedonobacter racemifer DSM 44963]
 gi|297555719|gb|EFH89583.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Ktedonobacter racemifer DSM 44963]
          Length = 944

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 61/195 (31%), Positives = 94/195 (48%), Gaps = 34/195 (17%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           +L+E    Y+    L+  D ++GL NH A +  L +         E+ ++ F D+D+FK 
Sbjct: 532 LLQERDQLYHEQRLLAITDAVTGLSNHRALMIRLDAAFAYHSKQRERYALFFIDLDHFKH 591

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-- 199
           +ND +GH VGD ++  +  +L  V G    VGR GGEEF           A +   DL  
Sbjct: 592 VNDQYGHLVGDFLLHEVGARLARVVGDGGIVGRYGGEEFV----------ALLWVRDLSH 641

Query: 200 -RKIIENSQINISSGP------------SIHITISAGIAER-CHKEPISTIIYRADQALY 245
            R++ E  ++ I   P             + +T+S G+A    H   +  +I +AD+A+Y
Sbjct: 642 MREVAERLRMEIMKEPFLWRQERESVPICLRMTVSIGVAVYPLHGTRLQELIAQADRAMY 701

Query: 246 VAKKSGRNRVVCFSD 260
            AK SGRN  VC  D
Sbjct: 702 RAKSSGRN-CVCIVD 715


>gi|254228301|ref|ZP_04921728.1| fog: ggdef domain containing protein [Vibrio sp. Ex25]
 gi|151939107|gb|EDN57938.1| fog: ggdef domain containing protein [Vibrio sp. Ex25]
          Length = 525

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D ++GLLN       LG +   N   SI+  DID+FK +NDN+GH VGD ++   +  + 
Sbjct: 370 DAMTGLLNRRGLDKVLGLFKQENTAFSILALDIDHFKSVNDNYGHDVGDNLLKEFAQLMK 429

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   + R GGEEF      +    A  +A  +R  +E     +       +T+S G
Sbjct: 430 EQARANDHLCRSGGEEFMMFLEATDVHHAVDVAERIRHNVEKHDFLVVG----KVTVSLG 485

Query: 224 IAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           ++  + +  PI  ++  AD ALY AK++GRNR     D +
Sbjct: 486 VSHWKGNDMPIEAVMKDADNALYKAKRNGRNRTELGEDAQ 525


>gi|320189897|gb|EFW64549.1| hypothetical protein ECoD_03378 [Escherichia coli O157:H7 str.
           EC1212]
          Length = 430

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 77/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P  H T
Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLP--HFT 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|323528765|ref|YP_004230917.1| diguanylate cyclase [Burkholderia sp. CCGE1001]
 gi|323385767|gb|ADX57857.1| diguanylate cyclase [Burkholderia sp. CCGE1001]
          Length = 506

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 13/177 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           L++  ++ +R+++L++ D L+GL N  A           L   +  LS++F D D+FKQ 
Sbjct: 318 LRDRALAGDRLTELTQTDPLTGLKNRRALDEVLQNEWDRLQRNDSHLSVLFVDADHFKQY 377

Query: 143 NDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GDK +  L+ ++V  V      V R GGEEF      +    A  +A  +R+
Sbjct: 378 NDQYGHAEGDKALKHLAARIVQRVHRRGDCVARYGGEEFVVVLPDTDAAGAYRVAEGIRE 437

Query: 202 IIENS-QINISSG-PSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +E+S Q    +G  ++H   ++I      R        +   AD ALY AK +GRN
Sbjct: 438 QLESSWQTGREAGSAAVHPFTVSIGCATGRRASPSTCEELTKAADIALYEAKSAGRN 494


>gi|54296901|ref|YP_123270.1| hypothetical protein lpp0942 [Legionella pneumophila str. Paris]
 gi|53750686|emb|CAH12093.1| hypothetical protein lpp0942 [Legionella pneumophila str. Paris]
          Length = 377

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 93/183 (50%), Gaps = 19/183 (10%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEK------LSIVFFDIDYFKQIN 143
           KEL I  N +  +S  D LSGL N   F +     +N        LS+V  DID FK IN
Sbjct: 194 KELLI--NELKVMSITDSLSGLYNRRYFDNIFPQEFNRARRNQYFLSLVSIDIDNFKLIN 251

Query: 144 DNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DN GHP GDKV+  ++D L  +F  +   + RLGG+EFA        +E   +   ++  
Sbjct: 252 DNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKETISICETIKNP 311

Query: 203 IENSQINISSGPS-----IHITISAGIAERCHKEPISTI---IYRADQALYVAKKSGRNR 254
            +   +N +   +      H+T+S GI    H E  ++I   I  AD+ALY AKK G+N+
Sbjct: 312 FKTENLNHTYDSNEQLFMSHVTLSIGIV-YIHFESSASIEHAITAADKALYQAKKKGKNQ 370

Query: 255 VVC 257
           +V 
Sbjct: 371 IVV 373


>gi|113968628|ref|YP_732421.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113883312|gb|ABI37364.1| diguanylate cyclase [Shewanella sp. MR-4]
          Length = 391

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 8/165 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
           ++I  L+  D L+GL N  A    L +        NE  S++  DID+FKQIND +GH +
Sbjct: 220 SKIKILAERDQLTGLWNRHAMQKRLATIHQLWQKNNEPYSVILLDIDHFKQINDQYGHAI 279

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD  +   +     V      + R GGEEF      ++ + A  +A+ L +++  + +  
Sbjct: 280 GDLALLTAARLFSTVLREHDVLCRHGGEEFLVLLPATNARAARTVADKLHRVLRENPLQ- 338

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             G  I +  S G A          ++  AD A+Y AK  GR+R+
Sbjct: 339 CQGQEIQLYASIGYATIYRGCEPDKLLIEADHAMYQAKSEGRDRI 383


>gi|330446090|ref|ZP_08309742.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490281|dbj|GAA04239.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 395

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 72/128 (56%), Gaps = 2/128 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L ++  DID+FK IND FGH VGD+VI  +S+Q+           R GGEEF      + 
Sbjct: 256 LVVMMCDIDHFKSINDQFGHLVGDQVIVNVSEQIQACVRVNDVAIRYGGEEFLILLPNTP 315

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
              A I+A  +R  + N  I I       I+IS G++++   + + ++I  AD+ALY AK
Sbjct: 316 LANAHIVAERIRNAVYN--IPIHHQNMSPISISIGVSQQHKGDNLDSLIREADKALYQAK 373

Query: 249 KSGRNRVV 256
           ++GRN VV
Sbjct: 374 QNGRNCVV 381


>gi|315180232|gb|ADT87146.1| GGDEF family protein [Vibrio furnissii NCTC 11218]
          Length = 380

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 101/213 (47%), Gaps = 16/213 (7%)

Query: 48  IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107
           +FLF+   +  Y L  ++V    L I+S+   L L +       E+   Y+R       D
Sbjct: 177 MFLFHQFHSKVYFLSGVVVGQNLLTIVSLGAMLSLFFYD-----EIEWHYHRAIH----D 227

Query: 108 CLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            L+G+ N   F+      L       +I   D+D+FKQ+ND+FGH VGD+ +  ++  + 
Sbjct: 228 ELTGIFNRRYFMEQAERRLKQAKAHYTIAIIDVDHFKQVNDSFGHDVGDRALEAIAQLMH 287

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
             F   + V R GGEEF     GS E E           + +  + I  G  + +T+S G
Sbjct: 288 RQFRHDL-VARYGGEEFVVLLAGSVE-ETRFKLERFNHEVAHHAMEI-YGHHVDLTVSIG 344

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +A    ++ +   + +AD ALY AK  GRNR+V
Sbjct: 345 MASVTSEQHLHQALKQADIALYDAKGKGRNRLV 377


>gi|309782496|ref|ZP_07677220.1| diguanylate cyclase [Ralstonia sp. 5_7_47FAA]
 gi|308918833|gb|EFP64506.1| diguanylate cyclase [Ralstonia sp. 5_7_47FAA]
          Length = 397

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 95/179 (53%), Gaps = 17/179 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ QL+ ID L+G+L   AF++          +  + LSI    ID FK +ND FGH V
Sbjct: 214 RRMDQLANIDELTGVLMRRAFMARASVLLHDAVASGKPLSIAVLAIDQFKAVNDGFGHAV 273

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+++  ++  +         +GRLGGEEFA   + + +  AA + ++LR  +E+S    
Sbjct: 274 GDRILKHVTSVVSTRLKPGDLIGRLGGEEFAIVVVDADKAAAAAVMDELRLAVEHSPRQ- 332

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS-----DIENN 264
                +  T SAG+      + ++  + RAD ALY+AK+ GRNRV+  S     D+E +
Sbjct: 333 ----GVRCTFSAGVECVMPGDTLAATLARADAALYLAKEKGRNRVIIASKAHEGDVETH 387


>gi|293607687|ref|ZP_06690018.1| GGDEF domain protein [Achromobacter piechaudii ATCC 43553]
 gi|292813825|gb|EFF72975.1| GGDEF domain protein [Achromobacter piechaudii ATCC 43553]
          Length = 430

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 79/177 (44%), Gaps = 26/177 (14%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+GL    A    L       ++   D+D+FK  ND  GH VGD+V+  ++ QL  V 
Sbjct: 248 DELTGLPGRRALNERLQRMGRVYTLAMADVDHFKAFNDTHGHDVGDQVLRMVASQLRRVP 307

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS----------- 215
           G      R GGEEF     G +  E+      +R+ IE  Q+ +   P+           
Sbjct: 308 GGGQAY-RYGGEEFTLVFPGKTAAESLPHLETVRRAIEAYQMRLRDKPARPKADQLGQRR 366

Query: 216 -----------IHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                      + +T+S G+AER    + P   +I  ADQALY AK  GRN+V  + 
Sbjct: 367 RGVRGGRNSRPLRVTVSIGLAERGDALRAP-DAVIKAADQALYKAKDGGRNQVCAYG 422


>gi|227325974|ref|ZP_03829998.1| hypothetical protein PcarcW_01091 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 610

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 75/157 (47%), Gaps = 11/157 (7%)

Query: 107 DCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           D L+GL N S+F         +     + +K  +   DID FK IND +GH  GD V+  
Sbjct: 452 DFLTGLPNRSSFFEQASAFFLLKQQSQHTDKGCLAIIDIDLFKNINDQYGHLAGDAVLKE 511

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           L+  + +       V RLGGEEF       S Q A +    +R+ IE   +      ++H
Sbjct: 512 LAMLMRMSLRQEDLVARLGGEEFIILLKEVSYQTAVVTIERIRQAIEQHTLEYDR-QNLH 570

Query: 218 ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
            TISAGIA  R     +   I  AD+ LY AK+ GRN
Sbjct: 571 FTISAGIAAYRSDLASVEEWIQLADENLYAAKRQGRN 607


>gi|226228481|ref|YP_002762587.1| hypothetical membrane protein [Gemmatimonas aurantiaca T-27]
 gi|226091672|dbj|BAH40117.1| hypothetical membrane protein [Gemmatimonas aurantiaca T-27]
          Length = 422

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 95/179 (53%), Gaps = 18/179 (10%)

Query: 96  SYNRI-SQLSRI---DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           +YNR+  QL+ I   D LSG  N   F       I+     +  ++++  D+D+FK +ND
Sbjct: 229 AYNRMRGQLATIVLTDPLSGCFNRRGFEQQYRREIARAARAHTDIALLAIDLDHFKLVND 288

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD+VIA   + L     T   V R GGEEFA  A  +S   A  LA    +I+E
Sbjct: 289 THGHLVGDQVIAEAGELLRASARTQDVVARTGGEEFAILAPDTSLDGAQHLA---LRIVE 345

Query: 205 NSQINISSGPS--IHITISAG-IAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFS 259
             +    + P   + +T+S G +++    + I+  +  R+D+ALY AK+SGRNR V +S
Sbjct: 346 AFRRRTFAEPQARVSVTVSIGVVSDSVRDDGIAEALRARSDEALYAAKRSGRNRAVLWS 404


>gi|257058834|ref|YP_003136722.1| diguanylate cyclase [Cyanothece sp. PCC 8802]
 gi|256589000|gb|ACU99886.1| diguanylate cyclase [Cyanothece sp. PCC 8802]
          Length = 494

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 81/169 (47%), Gaps = 17/169 (10%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      SL    E+       L I+  D+D+FK +ND FGH  GD+V+  L 
Sbjct: 328 DALTGLYNRRYLEESLKKELERAKRKERSLGIIMIDVDHFKNVNDTFGHDKGDQVLKKLG 387

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L           R GGEE       +S +     A  LR+ ++N  +++       +T
Sbjct: 388 GFLQRHIRGSDIACRYGGEELTLILPEASLENTRQRAEQLRQAVKNLDLDLCDHT---LT 444

Query: 220 ISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVCFS--DIEN 263
           IS GIA  C   H      ++  ADQALY AK+ GR+RV+C    DIE+
Sbjct: 445 ISVGIA--CFPEHGYSGKALLKTADQALYQAKQQGRDRVICPPILDIED 491


>gi|15641382|ref|NP_231014.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121588014|ref|ZP_01677766.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121728527|ref|ZP_01681550.1| GGDEF family protein [Vibrio cholerae V52]
 gi|147675423|ref|YP_001216929.1| GGDEF family protein [Vibrio cholerae O395]
 gi|153819349|ref|ZP_01972016.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|153821309|ref|ZP_01973976.1| GGDEF family protein [Vibrio cholerae B33]
 gi|153825250|ref|ZP_01977917.1| GGDEF family protein [Vibrio cholerae MZO-2]
 gi|153828801|ref|ZP_01981468.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|227081541|ref|YP_002810092.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|229505049|ref|ZP_04394559.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229511281|ref|ZP_04400760.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229518399|ref|ZP_04407843.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229608053|ref|YP_002878701.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254286178|ref|ZP_04961138.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|254848492|ref|ZP_05237842.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255745757|ref|ZP_05419705.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262158965|ref|ZP_06030077.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|262169324|ref|ZP_06037016.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|298498546|ref|ZP_07008353.1| GGDEF family protein [Vibrio cholerae MAK 757]
 gi|9655864|gb|AAF94528.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121547755|gb|EAX57846.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121629191|gb|EAX61631.1| GGDEF family protein [Vibrio cholerae V52]
 gi|126510094|gb|EAZ72688.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|126521127|gb|EAZ78350.1| GGDEF family protein [Vibrio cholerae B33]
 gi|146317306|gb|ABQ21845.1| GGDEF family protein [Vibrio cholerae O395]
 gi|148875754|gb|EDL73889.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|149741078|gb|EDM55137.1| GGDEF family protein [Vibrio cholerae MZO-2]
 gi|150423847|gb|EDN15788.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|227009429|gb|ACP05641.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|227013287|gb|ACP09497.1| GGDEF family protein [Vibrio cholerae O395]
 gi|229345114|gb|EEO10088.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229351246|gb|EEO16187.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229357272|gb|EEO22189.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229370708|gb|ACQ61131.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254844197|gb|EET22611.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255736832|gb|EET92229.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262022137|gb|EEY40846.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|262029150|gb|EEY47802.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|297542879|gb|EFH78929.1| GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 443

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 15/166 (9%)

Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+G+LN  AF   L          N KL+++FFD+D FK+IND  GH VGD V+
Sbjct: 269 LSERDSLTGILNRRAFKQQLSHALIKAKRSNMKLALLFFDLDKFKEINDTKGHEVGDLVL 328

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGP 214
             ++ +L        F GRLGG+EF         Q+ + + N   +++E  Q  +  +  
Sbjct: 329 QEIAQRLKGSIRESDFCGRLGGDEFVVCL--DLLQDHSGVINKAYQMLEKLQKPLQLNQE 386

Query: 215 SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S+ I +S G+A   E+  + P   ++  AD+A+Y AK    N V C
Sbjct: 387 SLEIGVSIGVALYPEQATQVP--ELLRIADEAMYTAKHQSGNTVYC 430


>gi|37676725|ref|NP_937121.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37201268|dbj|BAC97091.1| GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 457

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 15/171 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
           +EL ++   + QLS+ D L+ + N   F+  L + + +   +S++ FDID FK+IND++G
Sbjct: 287 RELQLANENLLQLSQQDYLTQISNRRHFMEQLKNLSPEAVSVSVLIFDIDDFKRINDSYG 346

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD VI  ++ Q+     +     R+GGEEFA  A G +  +A  LA  +  ++E   
Sbjct: 347 HATGDLVIQNVATQVDETLPSDTLYARIGGEEFAIVAFGLAFTDAQALAKKVCHVVEKLT 406

Query: 208 I-NISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNR 254
             N+  G    +TIS G    C   P S     +  AD+ +Y AK+ G+N+
Sbjct: 407 FNNVPEG----VTISLG----CAYYPFSNGHIDLGMADKLMYQAKRLGKNQ 449


>gi|327189552|gb|EGE56705.1| putative sensory box/GGDEF family protein (nitrogen fixation
           positive activator protein-like protein) [Rhizobium etli
           CNPAF512]
          Length = 737

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 108/208 (51%), Gaps = 22/208 (10%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA------ 117
           +++E L LV +   + L +G+++G  LK      N   + +  D LSGL N         
Sbjct: 266 MVIEALGLVGMFFMVLLAIGWLAGRRLK---AEENSAREEALRDRLSGLSNRDGLGLAVD 322

Query: 118 -FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
            F++        + +++ D+D FK++ND++GH  GD++I  ++  L V+      + R+G
Sbjct: 323 RFVAEARQSKRNVLLLYLDLDGFKEVNDSYGHGTGDQLIRAVAAGLQVLIPQGAVLARIG 382

Query: 177 GEEFAAAALGSSEQEAAILAND--LRKIIENSQIN---ISSGPSIHITIS-AGIAERCHK 230
           G+EFA A L   E  AA+  ++  L  ++E  +I    +  G SI I +S AG  +R   
Sbjct: 383 GDEFAIAFLSDGENAAALQLSEQILDFMVEPLEIGRRVVVVGASIGIAMSPAGAIDR--- 439

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCF 258
                ++ R+D A+Y AK++GR R+  +
Sbjct: 440 ---EELVRRSDLAMYKAKEAGRARMTLY 464


>gi|322434247|ref|YP_004216459.1| diguanylate cyclase [Acidobacterium sp. MP5ACTX9]
 gi|321161974|gb|ADW67679.1| diguanylate cyclase [Acidobacterium sp. MP5ACTX9]
          Length = 394

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 24/182 (13%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  ++  D L+ L N  AF       +    S     S++  D+D+FK+IND FGH  GD
Sbjct: 215 LEHIASTDPLTRLYNRRAFRYWCDKEVKRSQSRGRLFSVLMIDLDHFKKINDRFGHLAGD 274

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +    +++         +GR GGEEF     G+S   A ++A+ LR  +  ++I + +
Sbjct: 275 GALCAAVEKMQDSIRGIDILGRWGGEEFILLLPGASPDSALVIADRLR--LNVAKIMVGA 332

Query: 213 GPSIH--------------ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +H              +T+S G+   R   + + +++ RAD+ LY AK +GRNR+V 
Sbjct: 333 TGELHRLEEILGDPNDMMRVTVSLGVTTYRGKGDTVESMLKRADEGLYEAKATGRNRIVA 392

Query: 258 FS 259
            +
Sbjct: 393 MT 394


>gi|217422909|ref|ZP_03454411.1| diguanylate cyclase [Burkholderia pseudomallei 576]
 gi|217393817|gb|EEC33837.1| diguanylate cyclase [Burkholderia pseudomallei 576]
          Length = 462

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 11/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           + LF ++  + + +  D L+ + N S F             +N  L++V  D+D+FKQ N
Sbjct: 275 RRLFDAHASLMRTASHDALTMVYNRSYFNEQFERAFHYARRHNAPLALVMVDVDHFKQYN 334

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD  +A ++  L  V G    FV R GGEEFA    G+ E+ AA +A   R+ 
Sbjct: 335 DTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPGADERGAATIAERARQA 394

Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
           +E  +I   + P  ++T+SAG A       E    +I  AD ALY AK  GRN
Sbjct: 395 VERLRIAADTAPG-YVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRN 446


>gi|194365042|ref|YP_002027652.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
 gi|194347846|gb|ACF50969.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
          Length = 512

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 86/183 (46%), Gaps = 20/183 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           E      R++  +  D L+G+LN     + L       G     LS+ F D+D FK+IND
Sbjct: 317 EFEARAKRLADQAHRDALTGVLNRRQLEAVLEQEFLRAGRQGWPLSVAFIDLDDFKKIND 376

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILANDL 199
             GH  GD+V+   + +L         V R GGEEF A    +SE  A      +LAN  
Sbjct: 377 AHGHLTGDEVLRAFAGKLQGQLRNSDTVARFGGEEFVALLPNTSESVALDVIRRVLAN-- 434

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVV 256
             I+      I SGP + +T SAG+A +   E    +  ++  AD  LY +K  GRNRV+
Sbjct: 435 --IVATPMAEIESGP-LFVTFSAGVATQGGYERFADVQDLLRAADDVLYRSKNLGRNRVI 491

Query: 257 CFS 259
             S
Sbjct: 492 ARS 494


>gi|71280078|ref|YP_271426.1| sensory box putative digualylate cyclase [Colwellia psychrerythraea
           34H]
 gi|71145818|gb|AAZ26291.1| sensory box putative digualylate cyclase [Colwellia psychrerythraea
           34H]
          Length = 292

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 84/168 (50%), Gaps = 11/168 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAF---ISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ Q + +D L+ + N  A+   I SL      Y    SI+  DID FK INDNFGH VG
Sbjct: 127 QLKQQTLLDELTQIKNRKAYNLKIKSLLAVFERYQTPFSIISIDIDDFKNINDNFGHDVG 186

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+      +         + R+GGEEF   +   ++ +A  LA  LRKI+  + I   
Sbjct: 187 DTVLRSFGALIEKNIRETDHLFRIGGEEFVILSESKTKVDAIQLAEKLRKIVAFNTI--- 243

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I+ITIS GI E    +  ++I  R D  LY AK  G+N+V   S
Sbjct: 244 -LTDINITISLGICEVTTGDGPNSIAKRVDNLLYEAKSHGKNKVTYHS 290


>gi|24372162|ref|NP_716204.1| sensory box/GGDEF family protein [Shewanella oneidensis MR-1]
 gi|24346060|gb|AAN53649.1|AE015503_10 sensory box/GGDEF family protein [Shewanella oneidensis MR-1]
          Length = 324

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 86/173 (49%), Gaps = 9/173 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +L  +  ++ +LS+ D L+ L N   +   L         Y+   S+V  DID+FK IND
Sbjct: 144 QLKAANEQLERLSQTDGLTQLHNRRHWQQCLEHEYDLYARYSGIASLVMIDIDHFKNIND 203

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GDKVI  ++  L          GR GGEEFA     +   +A      LR+ I 
Sbjct: 204 TYGHLAGDKVIQHIAHILSHSLRETDCAGRYGGEEFAVVMPSTCGADALNFTERLREKIA 263

Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +S + +  G  I +T+S G+ E   H    S+ I  +D+ALY AK+ GRN  V
Sbjct: 264 SSTV-VYEGLKIKVTVSLGVCELGKHISSSSSWISCSDKALYEAKQKGRNCTV 315


>gi|332307907|ref|YP_004435758.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175236|gb|AEE24490.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 496

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 18/207 (8%)

Query: 58  FYGL-EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
            +GL EY+L+   +++I++         + G  +  L     ++  +   D L+   +  
Sbjct: 277 LFGLNEYVLIYQFAIIIVAANA------LFGIAVPALVADNEKLQAIITTDALTQAASRQ 330

Query: 117 AFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            F+         S N++  LS++ FD+D FK++ND FGH  GDK +  +     +     
Sbjct: 331 HFMQQAERAVNRSLNDEMPLSLIMFDMDNFKKVNDTFGHSAGDKALQSVCQVAQLSLRPT 390

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
             +GR GG+EF A    S+  EA  +A   R +   ++  ++ G  IH   S G+A+   
Sbjct: 391 DLLGRFGGDEFVALLPDSTNLEAQQIAQ--RILTSVNKAEVAPGQPIH--CSFGVAQLSQ 446

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV 256
            +  + +   AD+ALY AK+ GRN +V
Sbjct: 447 DQNFTELFNAADKALYKAKQQGRNTIV 473


>gi|327484040|gb|AEA78447.1| GGDEF family protein [Vibrio cholerae LMA3894-4]
          Length = 443

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 15/166 (9%)

Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+G+LN  AF   L          N KL+++FFD+D FK+IND  GH VGD V+
Sbjct: 269 LSERDSLTGILNRRAFKQQLSHALIKAKRSNMKLALLFFDLDKFKEINDTKGHEVGDLVL 328

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGP 214
             ++ +L        F GRLGG+EF         Q+ + + N   +++E  Q  +  +  
Sbjct: 329 QEIAQRLKGSIRESDFCGRLGGDEFVVCL--DLLQDHSGVINKAYQMLEKLQKPLQLNQE 386

Query: 215 SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S+ I +S G+A   E+  + P   ++  AD+A+Y AK    N V C
Sbjct: 387 SLEIGVSIGVALYPEQATQVP--ELLRIADEAMYTAKHQSGNTVYC 430


>gi|324005885|gb|EGB75104.1| diguanylate cyclase domain protein [Escherichia coli MS 57-2]
          Length = 302

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 97/197 (49%), Gaps = 10/197 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LLL  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 100 LTLLWALFTSMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAK 159

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 160 LCHTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEEF 219

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G++  +AA +A  +R  +   ++ I+   +I I+ S G+  +E         +  
Sbjct: 220 CVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 279

Query: 239 RADQALYVAKKSGRNRV 255
            AD+ LY+AK++GRNRV
Sbjct: 280 LADRRLYLAKQAGRNRV 296


>gi|297616706|ref|YP_003701865.1| diguanylate cyclase [Syntrophothermus lipocalidus DSM 12680]
 gi|297144543|gb|ADI01300.1| diguanylate cyclase [Syntrophothermus lipocalidus DSM 12680]
          Length = 402

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 12/170 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNF 146
           EL  +  R++  +  D L+G LN  A +  + S       +   ++ FDID FKQ+ND  
Sbjct: 229 ELERAKQRLADKASTDALTGALNKKALLQEIDSLLVARDRDVFCLLMFDIDEFKQLNDKL 288

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD  +  LS  +          GR GG+EF      +   +A ++A  +R+ +EN 
Sbjct: 289 GHVAGDMALKRLSRIVKSSIREGDIFGRYGGDEFIVVLPHTPLSDARLIAERIRQRVEND 348

Query: 207 QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +    +GP   IT+S G+A      E    ++  AD  LY++K  GRNRV
Sbjct: 349 K----TGPP--ITLSMGLAAYPLDGETGVALVKAADDGLYLSKSKGRNRV 392


>gi|260774955|ref|ZP_05883855.1| hypothetical protein VIC_000327 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609045|gb|EEX35204.1| hypothetical protein VIC_000327 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 545

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 12/164 (7%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L  +        + LS++  D+D+FK+ NDNFGH  GD V+  +S
Sbjct: 365 DPLTGLFNRRFFEQKLTEHAMNSATSEQPLSLLMLDLDHFKRFNDNFGHDAGDFVLKEIS 424

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L    G      RLGGEE A     S+ ++A   AN L + + +  +         + 
Sbjct: 425 ALLKRSVGDDEIACRLGGEELAVLLPQSNMKQATEFANTLCEAVRSLHLEHKGLSLGQLG 484

Query: 220 ISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +S G++   + +P   + +++  ADQALY+AK  GR+RVV + +
Sbjct: 485 VSIGVS--TYPKPSSDMESLVKMADQALYMAKDLGRSRVVNYDE 526


>gi|182625672|ref|ZP_02953441.1| GGDEF domain protein [Clostridium perfringens D str. JGS1721]
 gi|177909074|gb|EDT71549.1| GGDEF domain protein [Clostridium perfringens D str. JGS1721]
          Length = 299

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 74/129 (57%), Gaps = 4/129 (3%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSS 188
           +++  DID FK++ND +GH VGDK++   + +L   +     ++GR GGEEF      ++
Sbjct: 172 TVIMADIDSFKKVNDTYGHLVGDKILRDFAKELNNNIRENSDWIGRYGGEEFIIVLNNAN 231

Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVA 247
            +    +A  LRKIIE  +++   G  S+ IT S G+ E   KE     I  AD+ LY+A
Sbjct: 232 LKNGVKVAEKLRKIIE--KMSFDYGDLSLKITSSFGVCEVSEKEDPFDTIKNADEKLYMA 289

Query: 248 KKSGRNRVV 256
           K +GRN+ V
Sbjct: 290 KMTGRNKTV 298


>gi|152997842|ref|YP_001342677.1| PAS/PAC sensor-containing diguanylate cyclase [Marinomonas sp.
           MWYL1]
 gi|150838766|gb|ABR72742.1| diguanylate cyclase with PAS/PAC sensor [Marinomonas sp. MWYL1]
          Length = 407

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 9/167 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ + +R D L+G  N   F       ++    + +KL ++  DID+FK+IND FGH  
Sbjct: 239 RKLDKATRTDPLTGTSNRREFNLIIHDELNLQKQFEKKLCLMTLDIDFFKKINDKFGHSG 298

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+ +  +++ L     +   + R+GGEEF      +  Q A   A  L K +      I
Sbjct: 299 GDQALQLIAEWLQKKLRSTDTLFRVGGEEFYILMRDTDIQNALKTAERLCKGMATHTFLI 358

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   S+HIT+SAG+ E      + + +   D+ALY AK  GRN  VC
Sbjct: 359 NQ-QSVHITLSAGVIELAPTTDLESALDMVDKALYEAKSDGRN-CVC 403


>gi|34580736|ref|ZP_00142216.1| regulatory components of sensory transduction system [Rickettsia
           sibirica 246]
 gi|28262121|gb|EAA25625.1| regulatory components of sensory transduction system [Rickettsia
           sibirica 246]
          Length = 450

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 75/158 (47%), Gaps = 8/158 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F       I      + KL ++  DID FK +ND +GH  GDKV+  +S
Sbjct: 291 DGLTGLFNRRYFDIHLKQIIEKTNKESIKLYLLMCDIDNFKHVNDTYGHQAGDKVLTIVS 350

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHI 218
             L         + R GGEEF          +A   A  +R  IE    +I      +  
Sbjct: 351 RILKNTLRVTDLIARFGGEEFTILLTDIDISKAIETAERVRVKIEYMNFHIEDQIEPLKT 410

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           TIS G+ +    E I + I RAD+A+Y AK +G+N+VV
Sbjct: 411 TISIGVTKYKKAESIESFIERADKAMYEAKTTGKNKVV 448


>gi|297578706|ref|ZP_06940634.1| GGDEF family protein [Vibrio cholerae RC385]
 gi|297536300|gb|EFH75133.1| GGDEF family protein [Vibrio cholerae RC385]
          Length = 489

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 9/161 (5%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            +L+  D ++GLLN     S L    +++ L+I   DID FKQIND +GH +GD+VI ++
Sbjct: 332 EELAARDPMTGLLNRRGMESFLKGKRHSQYLAIAVLDIDDFKQINDAYGHDMGDRVICYI 391

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            +Q+     +   V R GGEEF         EQ   I+      +  +S + +  G    
Sbjct: 392 GEQIENHIRSSDAVARFGGEEFVIYVTAKEKEQITRIMQRIFDAVCRDSPLILEPG---- 447

Query: 218 ITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            T+S GI   E         +   AD+ LYVAK SG+N++V
Sbjct: 448 FTVSGGIEVVESTTDRSFEDLFKAADEKLYVAKTSGKNQLV 488


>gi|298292200|ref|YP_003694139.1| diguanylate cyclase [Starkeya novella DSM 506]
 gi|296928711|gb|ADH89520.1| diguanylate cyclase [Starkeya novella DSM 506]
          Length = 389

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 105/203 (51%), Gaps = 19/203 (9%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN- 126
           N  + +++I +++ L Y    +++E     +R +  +R D L+GLLN   F S L   N 
Sbjct: 187 NAVVGLVAIGVAIFLNYALVLMVRERAELLHRSA--ARRDELTGLLNRRGF-SELALANC 243

Query: 127 ---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                ++++  DID+FKQ+ND FGH  GD+V+   +  L +       VGR+GG+EFAA 
Sbjct: 244 ETAGPVALIILDIDHFKQVNDRFGHATGDRVLEAFAHVLRINLRQADIVGRIGGDEFAAL 303

Query: 184 ALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHITISAGIAERCHKEP---------I 233
             G+SE  A   A  +R+  +     +   G  +  + S G+A  C   P         +
Sbjct: 304 LPGASEAAAGQAAERIREAFQAGVGQMRPDGARVECSSSIGVA--CGDFPDAPSDGAARL 361

Query: 234 STIIYRADQALYVAKKSGRNRVV 256
             ++  AD+ALY AK +GRNRVV
Sbjct: 362 EALLAWADRALYEAKSAGRNRVV 384


>gi|292900137|ref|YP_003539506.1| signal transduction protein [Erwinia amylovora ATCC 49946]
 gi|291199985|emb|CBJ47109.1| putative signal transduction protein [Erwinia amylovora ATCC 49946]
          Length = 535

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 84/163 (51%), Gaps = 9/163 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+   ++ D L+GLLN     + L    S  +  +++  DID FK +ND FGH  GD VI
Sbjct: 359 RLKSEAQTDPLTGLLNRRGLDAVLDYFLSTGQPFALLALDIDRFKGVNDAFGHAAGDTVI 418

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++ QL +       + R GGEEF     G+    A ++A  +RK IE  QI+      
Sbjct: 419 KTVAQQLGLGARQSDVLCRNGGEEFLMILPGADRDRALMIAERVRKRIEQFQIDAIG--- 475

Query: 216 IHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            ++TIS GI+      +  +     +AD+ALY AK +GRN VV
Sbjct: 476 -NVTISIGISFWSSDSENDMHDAFGQADEALYRAKNTGRNCVV 517


>gi|291006137|ref|ZP_06564110.1| diguanylate cyclase [Saccharopolyspora erythraea NRRL 2338]
          Length = 544

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 10/171 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL     F + L             L++   DID+FK IND +GHPVGD+V
Sbjct: 170 RLAVTDVLTGLCTRRYFEAHLPQAMARCERAGRPLAVFIIDIDHFKSINDRYGHPVGDRV 229

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   + +L         + R GGEEFA  AL         +A  LR  +    + +S+  
Sbjct: 230 LVETATRLRRAVREGDVLARYGGEEFALLALDVDRAAVTGMAERLRAAVGGMPVELSTAD 289

Query: 215 SIHITIS--AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
              +T+S  A   +   + P   +I  AD+ALY AK  GR+RV    ++E+
Sbjct: 290 RAWVTVSVGAAGGDGVGRSP-QQLIADADRALYAAKAMGRDRVALGDELEH 339


>gi|238894827|ref|YP_002919561.1| hypothetical protein KP1_2841 [Klebsiella pneumoniae NTUH-K2044]
 gi|238547143|dbj|BAH63494.1| hypothetical protein KP1_2841 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 459

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 74/153 (48%), Gaps = 10/153 (6%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GLLN   F   + +         ++  DID+FK IND  GH  GD+V+  LS  L 
Sbjct: 297 DPLTGLLNRREFHHLVEAPTFIPRGYCLLLIDIDHFKSINDIHGHQKGDEVLLVLSRILE 356

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   + R GGEEF      S    A ILA  +R+ +   Q       ++ +T+S G
Sbjct: 357 TSVDREDKIYRWGGEEFLLFLPHSPIGRALILAEGIRQAVSEYQ-------TLSVTVSIG 409

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +AE    E +  +  R D+ALY AK  GRNRV 
Sbjct: 410 VAEHHDGETVDQLFSRVDKALYAAKNDGRNRVT 442


>gi|237808108|ref|YP_002892548.1| diguanylate cyclase with PAS/PAC sensor [Tolumonas auensis DSM
           9187]
 gi|237500369|gb|ACQ92962.1| diguanylate cyclase with PAS/PAC sensor [Tolumonas auensis DSM
           9187]
          Length = 423

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 14/168 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D L+ L N           IS        L+I   D+D+FK +ND +GH  G
Sbjct: 256 RLRTLAERDHLTRLFNRRKIMDCLETEISRADRQASALTIAMLDLDHFKNVNDKWGHAAG 315

Query: 152 D---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           D   K  A L  Q +       ++GR+GGEEF      + + EA  +   +  ++++   
Sbjct: 316 DLVLKEFALLCQQQIRKLD---YLGRIGGEEFLLIMSDTDQTEAMFVLERIISVVQHHCF 372

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           N      I+IT SAG+AE    + I  +  +AD+ALY AK  GRN++V
Sbjct: 373 NWKQT-EINITCSAGLAEWHPLQNIQQLYTQADKALYEAKNHGRNQIV 419


>gi|149924030|ref|ZP_01912413.1| FHA domain/GGDEF domain protein [Plesiocystis pacifica SIR-1]
 gi|149815113|gb|EDM74666.1| FHA domain/GGDEF domain protein [Plesiocystis pacifica SIR-1]
          Length = 294

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 88/179 (49%), Gaps = 24/179 (13%)

Query: 94  FISYNRIS--------QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           FIS N I          L+  D L+G+ N  +F S+L +          +L++  FDID+
Sbjct: 116 FISRNNIEAAFHEHVYSLTHFDSLTGVHNRPSFDSALANSVAKAARAQSQLALFLFDIDH 175

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAI 194
           FK+ ND +GH  GD V++    Q+  + G  M    F  R GGEEFA    G        
Sbjct: 176 FKRCNDTYGHRAGDYVLS----QVGRLVGEHMRAGDFAARYGGEEFALILRGLVPPAPTR 231

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            A+ +R ++E  +     G  I +TIS G+AE       + ++  ADQ LY AK++GRN
Sbjct: 232 FADHIRNLVEVQRFEF-EGKHIPVTISGGVAEWEPGMVGAQLVELADQRLYRAKQAGRN 289


>gi|134280698|ref|ZP_01767408.1| diguanylate cyclase [Burkholderia pseudomallei 305]
 gi|134247720|gb|EBA47804.1| diguanylate cyclase [Burkholderia pseudomallei 305]
          Length = 462

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 11/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           + LF ++  + + +  D L+ + N S F             +N  L++V  D+D+FKQ N
Sbjct: 275 RRLFDAHASLMRTASHDALTMVYNRSYFNEQFDRAFHYARRHNTPLALVMVDVDHFKQYN 334

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD  +A ++  L  V G    FV R GGEEFA    G+ E+ AA +A   R+ 
Sbjct: 335 DTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPGADERGAAAIAERARQA 394

Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
           +E  +I   + P  ++T+SAG A       E    +I  AD ALY AK  GRN
Sbjct: 395 VERLRIAADTAPG-YVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRN 446


>gi|260550760|ref|ZP_05824968.1| WspR [Acinetobacter sp. RUH2624]
 gi|260406266|gb|EEW99750.1| WspR [Acinetobacter sp. RUH2624]
          Length = 420

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 118/239 (49%), Gaps = 11/239 (4%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           M+Y  +  +I +   + + N+   YI L        IL  ++S ++IS   SL L     
Sbjct: 171 MLYVGLSAAILVFVFLNLLNVNCDYIALGRALFGTCILGFSISTMLISRERSLFLNNQLA 230

Query: 88  SILKELF-ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEK--LSIVFFDIDYF 139
            I +++  I  + +  LS+ D L+ + N   F      +      EK  L+++F DID+F
Sbjct: 231 EINEQILRIEASELLHLSQQDALTQISNRRTFDEMFDFFYYRANQEKRPLAVLFIDIDFF 290

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND +GH +GDKVI+ ++  +        FV R GGEEF      +  Q A  +A ++
Sbjct: 291 KNYNDFYGHQMGDKVISSIAAAIKNSIRHVDFVARYGGEEFVVLLPETPAQGAYAVAANI 350

Query: 200 RKIIENSQI-NISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255
            K IE   I + +S  S ++TIS G        K     +I+ ADQALY AK+ GRN++
Sbjct: 351 YKAIERQAIPHAASLVSKYVTISLGFTVYTGGLKMGQDKLIHAADQALYRAKQLGRNQI 409


>gi|241204330|ref|YP_002975426.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858220|gb|ACS55887.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 423

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 11/173 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-ISSLGSYNEKL------SIVFFDIDYFKQINDNFGHP 149
           YN + + +  D L+G+ + +   + +     E L      +++  D D+FK +ND +GH 
Sbjct: 250 YNDLLERTGRDMLTGVYDRTRMEVEAPLMLREALRQGLYATVLILDADHFKDVNDGYGHL 309

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+  ++ +L     +   V R GGEEF A   G+  +E  +LA  LR  I  S   
Sbjct: 310 QGDEVLKAIAARLGTTLRSSDRVFRFGGEEFVAVCPGADHEEGLLLAERLRWTIATSVKT 369

Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
               P   IT+S G+A         + ++  AD  LYVAKKSGRN VV  S +
Sbjct: 370 PDDRP---ITVSIGVATADEDGVDFTAVLTAADGRLYVAKKSGRNCVVGRSGV 419


>gi|217975084|ref|YP_002359835.1| GAF sensor-containing diguanylate cyclase [Shewanella baltica
           OS223]
 gi|217500219|gb|ACK48412.1| diguanylate cyclase with GAF sensor [Shewanella baltica OS223]
          Length = 594

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 10/177 (5%)

Query: 89  ILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQIND 144
           +L++  +S N ++ +++  D L+GL N   F   L +    +    +   D+DYFK  ND
Sbjct: 413 VLQQALVSANTQLKEMAETDELTGLANRRPFTERLETVLQADTPAGLFMLDVDYFKSYND 472

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
            +GH  GD V+  ++D L      P    + R+GGEEFA      +  +   +A  L  +
Sbjct: 473 TYGHLEGDVVLKRVADALAQCDILPHNALLARIGGEEFALVVEHVTPAQLTAIATQLCYL 532

Query: 203 IENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E   I   + P   +TIS G      ++     ++ ++ RAD  LY AK  GRNRV
Sbjct: 533 VEQLNIPHQASPLAVVTISIGSVFLPLDKVSGLKMADVLRRADVCLYRAKDKGRNRV 589


>gi|218294641|ref|ZP_03495495.1| diguanylate cyclase [Thermus aquaticus Y51MC23]
 gi|218244549|gb|EED11073.1| diguanylate cyclase [Thermus aquaticus Y51MC23]
          Length = 536

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 79/167 (47%), Gaps = 13/167 (7%)

Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           S L+  D L+GLLN           ++    Y   +S+V  DID FK +ND +GHPVGD+
Sbjct: 372 SALALTDPLTGLLNRRGLELELPKLVALARRYGTPVSVVMMDIDRFKWVNDTYGHPVGDE 431

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  L   +           R GGEEF     G+  Q A  +   +R      +I     
Sbjct: 432 VLRRLGQIVKASVRREDLAVRYGGEEFLLFLYGADRQAAKEVVERIRSRFRTEKIPPIPY 491

Query: 214 PSIHITISAGIA--ERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           P   +T+SAGIA  E    E  +   I +AD AL  AK++GR+RV  
Sbjct: 492 P---LTLSAGIAGGEVPEGEAVVEEWILKADYALLRAKETGRDRVTL 535


>gi|158320221|ref|YP_001512728.1| diguanylate cyclase [Alkaliphilus oremlandii OhILAs]
 gi|158140420|gb|ABW18732.1| diguanylate cyclase [Alkaliphilus oremlandii OhILAs]
          Length = 1822

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 91/179 (50%), Gaps = 19/179 (10%)

Query: 93   LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
            + ++   ++ +S ID ++G      F       I      N+ LSI+  DID+FK +ND 
Sbjct: 1467 ILLTNRNLAMISNIDRMTGAYTRKYFEQIFDEEIEQAKESNQPLSIIMLDIDHFKNVNDI 1526

Query: 146  FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            +GH  GD ++  +   +     +   VGR GGEEF      +S  +A  +A  +R  +++
Sbjct: 1527 YGHQKGDNILTEVGRIIKSNIRSTDHVGRYGGEEFVIILPNTSNMDAFHVAEKIRLKVQS 1586

Query: 206  SQINISSGPSIHITISAGIAERCHKEPIST-----IIYRADQALYVAKKSGRNRVVCFS 259
            + +    G +  +TIS GI+      PI +     II +ADQALY AK++GRNR V + 
Sbjct: 1587 TNL---LGKAEVLTISCGISTF----PIDSNKQLQIIEKADQALYHAKENGRNRSVRWD 1638


>gi|126444744|ref|YP_001061282.1| diguanylate cyclase [Burkholderia pseudomallei 668]
 gi|126224235|gb|ABN87740.1| diguanylate cyclase [Burkholderia pseudomallei 668]
          Length = 462

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 11/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           + LF ++  + + +  D L+ + N S F             +N  L++V  D+D+FKQ N
Sbjct: 275 RRLFDAHASLMRTASHDALTMVYNRSYFNEQFERAFHYARRHNAPLALVMVDVDHFKQYN 334

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD  +A ++  L  V G    FV R GGEEFA    G+ E+ AA +A   R+ 
Sbjct: 335 DTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPGADERGAATIAERARQA 394

Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
           +E  +I   + P  ++T+SAG A       E    +I  AD ALY AK  GRN
Sbjct: 395 VERLRIAADTAPG-YVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRN 446


>gi|24373752|ref|NP_717795.1| GGDEF family protein [Shewanella oneidensis MR-1]
 gi|24348133|gb|AAN55239.1|AE015662_1 GGDEF family protein [Shewanella oneidensis MR-1]
          Length = 341

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 81/156 (51%), Gaps = 6/156 (3%)

Query: 107 DCLSGLLNHSAFISSLG----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+G LN  AF + +        E   ++  DID+FK  NDN+GH +GD+V+  ++ +L
Sbjct: 182 DALTGCLNRRAFDADIAGMIAQAPEGTCLILVDIDHFKAFNDNYGHQLGDQVLKAVAKRL 241

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITI 220
                    + R GGEEFA     S  +    LA  +R+ +E   +       +  +IT 
Sbjct: 242 QEACRDGSKLYRFGGEEFAIIVPKSQLRITRQLAEAMRRGLEKLCLKDRRKDQLVDNITA 301

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S G+A+   ++ +  +I + D+ LY AK+ GRNRV+
Sbjct: 302 SFGVAQWQERQSVVQLIEKTDKLLYEAKRLGRNRVM 337


>gi|24375904|ref|NP_719947.1| GGDEF family protein [Shewanella oneidensis MR-1]
 gi|24350880|gb|AAN57391.1|AE015875_7 GGDEF family protein [Shewanella oneidensis MR-1]
          Length = 435

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 26/205 (12%)

Query: 66  VENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           VE + ++   + ++LL+  +  G+ +  L    ++I  L+  D L+GL N  A    L  
Sbjct: 235 VEAIPMLWFYVFLALLINIVMIGNAMTRLV---SKIRVLAEKDQLTGLWNRRAMQKRLSH 291

Query: 125 YNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM----FVG 173
            +++        S++  D+D+FK IND++GH VGD  IA LS     +F + +     + 
Sbjct: 292 IHQRWQKKAEPYSVILLDLDHFKHINDHYGHDVGD--IALLSA--ARLFSSALREHDVLC 347

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHK 230
           R GGEEF      +S Q A ++A+ L +I+  + IN      + +  S G A   + C  
Sbjct: 348 RHGGEEFLVLLPATSSQAARVVADKLHRILRENPINWQDK-KVQLCASVGYATIYQGCQP 406

Query: 231 EPISTIIYRADQALYVAKKSGRNRV 255
           +    ++  AD A+Y AK  GR+R+
Sbjct: 407 D---KLLIEADHAMYRAKSEGRDRI 428


>gi|88798609|ref|ZP_01114193.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Reinekea sp. MED297]
 gi|88778709|gb|EAR09900.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Reinekea sp. MED297]
          Length = 295

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 11/170 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI++L+  D ++GL+N +         I        K++ +F D+DYFKQ+ND+FGH VG
Sbjct: 124 RITRLAHFDSITGLINRNLLEDRARQAIYRAKRLQGKMAFLFLDLDYFKQVNDHFGHLVG 183

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  +  ++  +      +GRLGG+EF       S  + A+L  +  KII        
Sbjct: 184 DRLLKAVGLRVQSILRDDDTMGRLGGDEFLILVERISYADDAMLIGE--KIIHTLAEPFG 241

Query: 212 -SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             G  + I+ + GIA    H   I+T++  AD+A+Y AK+ GRN++  F+
Sbjct: 242 IDGHRLQISGTIGIALYPDHGHAINTLLDHADKAMYRAKELGRNKLAVFN 291


>gi|84387451|ref|ZP_00990470.1| GGDEF family protein [Vibrio splendidus 12B01]
 gi|84377704|gb|EAP94568.1| GGDEF family protein [Vibrio splendidus 12B01]
          Length = 299

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 83/170 (48%), Gaps = 19/170 (11%)

Query: 98  NRISQLSRIDCLSGLLN----HSAFISSLGSYNEKLSI--VFFDIDYFKQINDNFGHPVG 151
           N    LS  D L+G  N    H     S+   + +LSI  +  DID+FK IND +GH +G
Sbjct: 142 NMFEALSYQDALTGCYNRLYLHQVIEPSI---DRQLSITSIMIDIDHFKSINDTYGHQMG 198

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D VI  L+D++     T     R GGEEF     G +E     L N L        +   
Sbjct: 199 DMVIKELADEIQKRLPTSSNCFRYGGEEFLVMVQGETEASIESLVNSL--------LESP 250

Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           S   + +TIS G+         +  +I  ADQALY++KKSGRN++  +SD
Sbjct: 251 SLLRLEVTISIGVKHASQALGSVEQLIDDADQALYISKKSGRNKIT-WSD 299


>gi|158522391|ref|YP_001530261.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3]
 gi|158511217|gb|ABW68184.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3]
          Length = 410

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 116/246 (47%), Gaps = 30/246 (12%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           F   V     +FL ++ + P++ +   L+ + +LV+ S+ +  LLG  +  I +E   +Y
Sbjct: 160 FWHAVALCGGLFLLHLLIFPWFQMPTDLIVHSALVVFSVAVISLLG--NYRIEREFRRAY 217

Query: 98  NR-----------------ISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSI--VF 133
            R                 + +++  D L+GL N   F + L      +  E+LSI  +F
Sbjct: 218 LRALKMKIDARQLEGLNRQLEEMAVSDPLTGLFNRRHFDAHLDAEWRSAVREQLSISLIF 277

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEA 192
            DID+FK  NDN GH  GD  +  ++D L      P     R GGEEF      ++  +A
Sbjct: 278 IDIDHFKLYNDNHGHQAGDLCLKQIADTLTENVHRPGDACVRYGGEEFVVLLANTNMDQA 337

Query: 193 AILANDLRKIIENSQINISSGP-SIHITISAGIAERC--HKEPISTIIYRADQALYVAKK 249
             +A  ++  ++   I     P +  +T+S G+A       +    ++ +AD++LY AK 
Sbjct: 338 LYVAQKIQSHLQALAIPHGYSPVAGEVTVSMGVASMVPDRDDTPEDLLEKADKSLYRAKD 397

Query: 250 SGRNRV 255
           +GRNR+
Sbjct: 398 AGRNRI 403


>gi|78067984|ref|YP_370753.1| diguanylate cyclase [Burkholderia sp. 383]
 gi|77968729|gb|ABB10109.1| diguanylate cyclase [Burkholderia sp. 383]
          Length = 452

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 14/178 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142
           + L  ++  + + S  D L+G  N        H+ F+ +     E LS++  D+D FK  
Sbjct: 275 QRLLEAHATLIRSSARDGLTGAFNRMHFNDHFHTLFLQAR-RQGEPLSLLMVDVDRFKAY 333

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD  +  +++ L      P   V R GGEEFA     +  + A ++A + R+
Sbjct: 334 NDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEFAIVLPNTGARGARVVAEEARE 393

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256
            +    + + + P+  +++S G A     + +ST   +I  AD ALY AK +GRNRVV
Sbjct: 394 AVLRLDLAMPTAPAGRVSVSVGCAT-VSPDDLSTPDALIEAADAALYRAKDTGRNRVV 450


>gi|66044557|ref|YP_234398.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63255264|gb|AAY36360.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|330968993|gb|EGH69059.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 334

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 82/169 (48%), Gaps = 11/169 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L   D L+GL N   F   L            +LS++  D+DYFK  NDNFGH  GD
Sbjct: 165 LQRLMNSDGLTGLSNRRHFDEYLELEWRRAIREQSQLSLLMIDVDYFKPYNDNFGHLEGD 224

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  ++  +      P     R GGEEFA     +S   A +LA  LR+ +    I +I
Sbjct: 225 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVSGMNIPHI 284

Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
           +  P   +T+S G+A    +   P   +I  AD+ LY AK +GRN+V  
Sbjct: 285 APAPGSSLTVSIGVATMTPQLGMPSRQLILDADKGLYQAKNNGRNQVAA 333


>gi|300856481|ref|YP_003781465.1| putative signal transduction protein [Clostridium ljungdahlii DSM
           13528]
 gi|300436596|gb|ADK16363.1| predicted signal transduction protein [Clostridium ljungdahlii DSM
           13528]
          Length = 354

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 87/171 (50%), Gaps = 17/171 (9%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           YN+I Q S+ D L+GL N + F S     +    +  +IV  DID FK  ND FGH  GD
Sbjct: 189 YNKIKQNSQKDFLTGLFNRNYFFSVIREKVKDCGKGFAIVMIDIDDFKSFNDRFGHQYGD 248

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ----EAAILANDL--RKIIENS 206
           +V+  +SD +         V R GGEE        ++     E  I   +L  +K +E +
Sbjct: 249 RVLRKVSDIIKDSIRDEDMVARYGGEEIIIYMYNITDSMSVYERMINIGELIKKKAVEYN 308

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           ++      S ++T+S GIA   +K + +   I RAD  LY AK SG+N+VV
Sbjct: 309 EV------SSYVTVSMGIAVCTNKNKDVEDTIRRADMNLYRAKNSGKNKVV 353


>gi|297539507|ref|YP_003675276.1| response regulator receiver modulated diguanylate cyclase
           [Methylotenera sp. 301]
 gi|297258854|gb|ADI30699.1| response regulator receiver modulated diguanylate cyclase
           [Methylotenera sp. 301]
          Length = 313

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 20/179 (11%)

Query: 92  ELFISYNRISQLSRI-------DCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDID 137
           E+ + Y ++ Q SR        D L+GL N   F+  L      ++ +K   ++++ D+D
Sbjct: 128 EVRLLYKQLEQYSRSMESWAMHDALTGLPNRRLFVDRLTLAMAHAHRKKCTTTVIYLDLD 187

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSEQEAAIL 195
            FK IND+FGH VGD ++  ++D+LV        V R GG+EF      L S +  + ++
Sbjct: 188 GFKLINDSFGHDVGDMLLKIVADRLVAAVRKEDTVARFGGDEFVLVLWELDSPDGVSMLV 247

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
           +  L  + E   IN   G +I I+  AG++    H E + T+I +AD ALY +K+ G+N
Sbjct: 248 SKVLMTLSEPYFIN---GRTIRISACAGVSIYPDHSEDMETLIKKADIALYESKRIGKN 303


>gi|262402535|ref|ZP_06079096.1| GGDEF family protein [Vibrio sp. RC586]
 gi|262351317|gb|EEZ00450.1| GGDEF family protein [Vibrio sp. RC586]
          Length = 489

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 80/161 (49%), Gaps = 9/161 (5%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            +L+  D ++GLLN     S L    +++ L+I   DID FKQIND +GH +GD+VI ++
Sbjct: 332 EELAARDPMTGLLNRRGMESFLKGKRHSQYLAIAVLDIDDFKQINDAYGHDMGDRVICYI 391

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            +Q+     +   V R GGEEF         EQ   I+      +   S + +  G    
Sbjct: 392 GEQIENHIRSSDAVARFGGEEFVVYVTAKEKEQITRIMQRIFDAVCRESPLILEPG---- 447

Query: 218 ITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            T+S GI   E         +   AD+ LYVAK SG+N++V
Sbjct: 448 FTVSGGIEVVESTTDRSFEDLFKAADEKLYVAKTSGKNQLV 488


>gi|224824527|ref|ZP_03697634.1| diguanylate cyclase [Lutiella nitroferrum 2002]
 gi|224603020|gb|EEG09196.1| diguanylate cyclase [Lutiella nitroferrum 2002]
          Length = 593

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 83/173 (47%), Gaps = 8/173 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           +KEL I+    S   + D L+G  N           IS     N  LS+   D+D FKQ+
Sbjct: 410 IKELEIALEAASAKVKEDQLTGAYNRRGLAEHFQREISRAERTNSPLSVALIDVDNFKQL 469

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND++GH  GD  +  L +           V R GGEEF      +   EA      L++ 
Sbjct: 470 NDHYGHLTGDDALKHLVNVTRHTMRPSDIVARFGGEEFVILLPDTPPPEAIQAIQRLQRE 529

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  +   +++   + IT SAG+A+    E  + +I RADQA+Y AK SG+NRV
Sbjct: 530 LTKT-FFLANNDRLLITFSAGVAKWHLGERDTDVIERADQAMYQAKISGKNRV 581


>gi|188990072|ref|YP_001902082.1| putative signal transduction protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167731832|emb|CAP50016.1| putative signal transduction protein [Xanthomonas campestris pv.
           campestris]
          Length = 326

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 15/178 (8%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           F +Y  +   ++ D L+GL N   F          ++ G+    + +   DID+FK++ND
Sbjct: 135 FQNYRSLLDDAQRDALTGLRNRKTFDDMILRLFAANADGAQENAVWLGIVDIDHFKRVND 194

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-II 203
            FGH  GD+V+  ++  +   F     + R GGEEF     G     A  L    R+ + 
Sbjct: 195 TFGHLYGDEVLLLVAQLMQRCFRQDDLLFRFGGEEFVIVLRGVDRDTAVSLFERFRRAVA 254

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E+S   + +     +T+S GI E      +S ++  AD+ALY AK+ GRNR   +S++
Sbjct: 255 EHSFPQVGT-----VTLSTGIVELSDGRLVSQMLDEADKALYWAKQHGRNRAAVYSEL 307


>gi|194365112|ref|YP_002027722.1| response regulator receiver modulated diguanylate cyclase
           [Stenotrophomonas maltophilia R551-3]
 gi|194347916|gb|ACF51039.1| response regulator receiver modulated diguanylate cyclase
           [Stenotrophomonas maltophilia R551-3]
          Length = 447

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 9/168 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+GL N   F+         L  + + +++   DID+FK IND  GH  GD
Sbjct: 268 LQDLATRDFLTGLPNRRCFLEQSQRQLPQLQLHGQCVAVAMIDIDHFKHINDTHGHEAGD 327

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +  ++  +     +   + R GGEEF        + EA +   +LR+ I   +++I +
Sbjct: 328 DALRAVAGAVAAHARSQDLIARFGGEEFCLLVPDMEQDEALLYFEELRQRIAALEVDIGT 387

Query: 213 GPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++ +T+S G+   R  ++ +  +I  AD+ LY+AK  GRNRV C +
Sbjct: 388 A-TLRMTVSIGLCCLRPQRDALHRLISEADRQLYLAKAGGRNRVSCTT 434


>gi|320107860|ref|YP_004183450.1| diguanylate cyclase [Terriglobus saanensis SP1PR4]
 gi|319926381|gb|ADV83456.1| diguanylate cyclase [Terriglobus saanensis SP1PR4]
          Length = 408

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 83/181 (45%), Gaps = 21/181 (11%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQ 141
           +++L  +   +  L+ ID L+ L N       L            + LSI+  D+D+FK+
Sbjct: 236 MEQLTAANLELDHLAGIDPLTNLANRRTLERHLAIEWRRAVRGERDSLSIIAIDVDHFKE 295

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +ND +GHP GD  +  L+  L  +F      V R+GG+EF     G        LA   R
Sbjct: 296 LNDTYGHPAGDDYLKMLAVMLREIFRREEDLVARVGGDEFVVLLTGIDASAVQSLAERTR 355

Query: 201 KIIENSQINISSGPSIHITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +E S        S H T+S G   +       P   ++  ADQALY AK++GRN V C
Sbjct: 356 SQMEAS--------SSHCTLSIGWVTVKPTPELRP-DALLRTADQALYRAKQNGRNHVSC 406

Query: 258 F 258
           F
Sbjct: 407 F 407


>gi|317154417|ref|YP_004122465.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
 gi|316944668|gb|ADU63719.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
          Length = 326

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 17/181 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ ++S +D L+GL N   F  +L       G  +  L ++  DID+FK  ND  GH  
Sbjct: 145 RKLERMSNLDSLTGLANRRCFDDTLVKEWVRNGRADAHLGLIMIDIDHFKHYNDALGHVD 204

Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL-----RKIIE 204
           GD  +  +++ +  V   P   V R GGEEFA    G+    A  +A+++     +  IE
Sbjct: 205 GDTCLRRVAEAIKGVVHRPGDMVARYGGEEFAVILPGTDYTGAMAVADNIHASVAQTSIE 264

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV--VCFSDIE 262
           +    +S   ++ I +S+GI   C   P   +I  AD+ALY AK++GRNR    C    E
Sbjct: 265 HPDSAVSCVVTVSIGVSSGIPT-CGSTP-EQLIQAADRALYEAKEAGRNRTRSTCLPGPE 322

Query: 263 N 263
           +
Sbjct: 323 D 323


>gi|254282690|ref|ZP_04957658.1| diguanylate cyclase [gamma proteobacterium NOR51-B]
 gi|219678893|gb|EED35242.1| diguanylate cyclase [gamma proteobacterium NOR51-B]
          Length = 378

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 107/231 (46%), Gaps = 15/231 (6%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI-SGSILK 91
           + F + IA    +  +  + +GL     L +I   N  ++ +SI  +L+  ++ S  +++
Sbjct: 130 LLFPMMIALAGLLPTMLAWLMGLGILASLMWIRQPNSDVMELSIMATLVATWVLSLGLMR 189

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
            +    + ++ L+  D L+G LN           I+    Y+   ++V  DID+FK IND
Sbjct: 190 LIAQQTDELADLALTDPLTGALNRRYLKPQTERNIADYRRYSRLSTLVMIDIDHFKAIND 249

Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KI 202
             GH  GD+ +  L   +   + G  M   RLGGEEF      +    A  +A +LR +I
Sbjct: 250 TLGHSEGDRALQNLVTLVEKRIRGVDMLY-RLGGEEFVIMLAETGTSSATRVAEELRVRI 308

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            E S    S  PS   T+S G+ +          + + D+ALY AK  GRN
Sbjct: 309 SEMS----SDEPSKRFTVSMGVCDVTVATSAEDWLRQLDEALYRAKDRGRN 355


>gi|241205730|ref|YP_002976826.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240859620|gb|ACS57287.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 783

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 14/178 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  S +R  + +  D L+GLLN   F       I++  +   +L+ +F D+D FK IND
Sbjct: 336 ELKASEDRNHRQAITDHLTGLLNRQGFEAVLDNKIAAADAAGHELACLFVDLDRFKWIND 395

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKII 203
           N GH  GD  +  L ++L           RLGG+EFA       +E+ A ++   +  I 
Sbjct: 396 NMGHAAGDMALIELVERLKTHLAPSDEAARLGGDEFAILLPAKDAEKRAKVMCEQIASIF 455

Query: 204 ENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           E         P +H++ S GIA    H    + ++ ++D A+Y  K+ G+N    F +
Sbjct: 456 ET-----PFAPDMHLSASVGIAIYPHHAATAAELLQKSDMAMYAKKRDGKNGAQLFDN 508


>gi|241662143|ref|YP_002980503.1| diguanylate cyclase [Ralstonia pickettii 12D]
 gi|240864170|gb|ACS61831.1| diguanylate cyclase [Ralstonia pickettii 12D]
          Length = 585

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 86/165 (52%), Gaps = 13/165 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++++  D L+ LLN  AF     +           ++++ FDID+FK+IND +GH VGD
Sbjct: 405 LARMAETDPLTQLLNRRAFEDRASAMCNAPHPKARLVALIMFDIDHFKRINDTYGHAVGD 464

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  ++        +   V R+GGEEFA      S  +A  +A+ LR  I  +++ + +
Sbjct: 465 EALRTVAGLCRAEGPSADMVARIGGEEFAVMIWADSLAQARAVADHLRHRI--AEVTVPT 522

Query: 213 GPSIHITISA----GIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           G  +   ++A     +A       + +++ RAD+ LY AK +GRN
Sbjct: 523 GTDLPCRMTASFGVAVAPAADGPKLESLLRRADRLLYAAKLAGRN 567


>gi|52841115|ref|YP_094914.1| two component response regulator protein [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52628226|gb|AAU26967.1| two component response regulator with GGDEF domain [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 380

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 93/183 (50%), Gaps = 19/183 (10%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEK------LSIVFFDIDYFKQIN 143
           KEL I  N +  +S  D LSGL N   F +     +N        LS+V  DID FK IN
Sbjct: 197 KELLI--NELKVMSITDSLSGLYNRRYFDNIFPQEFNRARRNQYFLSLVSIDIDNFKLIN 254

Query: 144 DNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DN GHP GDKV+  ++D L  +F  +   + RLGG+EFA        +E   +   ++  
Sbjct: 255 DNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKETISICETIKNP 314

Query: 203 IENSQINISSGPS-----IHITISAGIAERCHKEPISTI---IYRADQALYVAKKSGRNR 254
            +   +N +   +      H+T+S GI    H E  ++I   I  AD+ALY AKK G+N+
Sbjct: 315 FKTENLNHTYDSNEQLFMSHVTLSIGIV-YIHFESSASIEHAITAADKALYQAKKKGKNQ 373

Query: 255 VVC 257
           +V 
Sbjct: 374 IVV 376


>gi|325273996|ref|ZP_08140155.1| GGDEF domain-containing protein [Pseudomonas sp. TJI-51]
 gi|324100885|gb|EGB98572.1| GGDEF domain-containing protein [Pseudomonas sp. TJI-51]
          Length = 645

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 84/161 (52%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q + +D L+GL N +A+   +        +    L++   D+D+FK+IND++GH  GDKV
Sbjct: 483 QKALLDPLTGLPNRAAWSERVEREMLEWQAQGGHLAMAILDLDHFKRINDSYGHLAGDKV 542

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++DQL        F+ R GGEEF      ++   AA  A  LR  IE    +   G 
Sbjct: 543 LKIVADQLRKCLRGRDFIARFGGEEFVLLLPQTAPPAAAQAAELLRATIEACPFHF-KGE 601

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT S G+A     E    ++ RAD ALY AK+ GRNRV
Sbjct: 602 RVVITTSIGLAAFRAGERADQVLKRADTALYRAKELGRNRV 642


>gi|307150963|ref|YP_003886347.1| GAF sensors-containing diguanylate cyclase/phosphodiesterase
            [Cyanothece sp. PCC 7822]
 gi|306981191|gb|ADN13072.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Cyanothece sp.
            PCC 7822]
          Length = 1297

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 59/191 (30%), Positives = 94/191 (49%), Gaps = 10/191 (5%)

Query: 76   ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128
            ITI+  +    G + ++L  +   + +LS ID L+ + N   F          L      
Sbjct: 1104 ITITAAIAIHQGELHQQLQNANLELKKLSAIDGLTQVANRHRFDVYLEQEWRRLMRSRHS 1163

Query: 129  LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187
            LS++  D+D+FK  ND +GH  GD  +  ++  +    G P   V R GGEEFA     +
Sbjct: 1164 LSLILSDVDHFKWYNDTYGHLAGDHCLQQIARVIKTSVGRPADLVARYGGEEFAIVLPET 1223

Query: 188  SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALY 245
            S + A  +A  +R+ ++N  I  +      +T+S G+A       +S   +I  AD+ALY
Sbjct: 1224 SLKGALFVAEQIRQKVKNLTIPHTKSAYQCVTLSLGVASLIPSGALSPKALINAADEALY 1283

Query: 246  VAKKSGRNRVV 256
             AK +GR+RVV
Sbjct: 1284 QAKANGRDRVV 1294



 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 6/162 (3%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           SY+ I+QL      +  L  +   ++ GS    L ++  D++ FK+IND+ GH VGD ++
Sbjct: 429 SYDPITQLPNWIIFNHRLALALVDATHGS--NMLGVLIIDLNQFKRINDSLGHGVGDYLL 486

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LANDLRKIIENSQINI-SS 212
              SD+L     +  F+  L      A  +    Q A +    N  +K++ + Q      
Sbjct: 487 QKASDRLQNCLESYSFLEPLLARWHGAGFIVLLSQLAYVDEAINFSQKLLNDFQEPFYVQ 546

Query: 213 GPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRN 253
             +I++ +S GIA   +    S ++ + A+ A+Y AK+ G+N
Sbjct: 547 SQAIYLGVSIGIALAPYDGDSSEVLLKNAESAMYQAKQQGKN 588


>gi|312973827|ref|ZP_07787999.1| cellulose synthesis regulatory domain protein [Escherichia coli
           1827-70]
 gi|310332422|gb|EFP99657.1| cellulose synthesis regulatory domain protein [Escherichia coli
           1827-70]
          Length = 186

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 9/158 (5%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N  A             ++    S++  D+D+FK IND FGH  GD+V++  +
Sbjct: 23  DTLTRLYNRGALFEKARPLAKLCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAA 82

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +          GR+GGEEF     G+S  EAA +A  +R  +   ++ I+   +I I+
Sbjct: 83  GLISSSLRAQDVAGRVGGEEFCVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRIS 142

Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+  +E         +   AD+ LY+AK++GRNRV
Sbjct: 143 ASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRV 180


>gi|229174719|ref|ZP_04302243.1| Sensory box/GGDEF family protein [Bacillus cereus MM3]
 gi|228608709|gb|EEK66007.1| Sensory box/GGDEF family protein [Bacillus cereus MM3]
          Length = 431

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ ID L+ + N   F   L +        +EK++++ FDID FK +ND +GH 
Sbjct: 262 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNDEKIALILFDIDNFKTVNDTYGHD 321

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE     
Sbjct: 322 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKHF- 380

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             SG S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 381 --SGIS-KLTASFGVALYEQGITREELMQRADIALYEAKKNGKNQVCVY 426


>gi|254521968|ref|ZP_05134023.1| pas:ggdef domain protein [Stenotrophomonas sp. SKA14]
 gi|219719559|gb|EED38084.1| pas:ggdef domain protein [Stenotrophomonas sp. SKA14]
          Length = 778

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 15/165 (9%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL+N           +  + S     S+ + ++D+FK +ND+FGH  GD+++   +
Sbjct: 341 DPLTGLINRREIERLLERALLQVRSDGGTHSLCYINLDHFKLVNDSFGHAAGDQMLRSFA 400

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN---SQINISSGPSI 216
           D LV       +VGRLG +EFA     + + EA  +   L+++I N   +   IS G S 
Sbjct: 401 DYLVAAVRDGDWVGRLGADEFAVFLAHAGQDEAKRV---LQRVIRNLGQATFPISEG-SP 456

Query: 217 HITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260
            ++ S G+ E     P ++ ++  AD A Y AK++GRNRV CF++
Sbjct: 457 QLSCSIGVVEVGADAPDVNWLMSAADSACYAAKQAGRNRVHCFNE 501


>gi|28210427|ref|NP_781371.1| diguanylate cyclase/phosphodiesterase [Clostridium tetani E88]
 gi|28202864|gb|AAO35308.1| diguanylate cyclase/phosphodiesterase-domain containing protein
           [Clostridium tetani E88]
          Length = 208

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 83/166 (50%), Gaps = 13/166 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + ++S  DCL+ + N+   I  +           E   I+  DID FK +NDNFGH  GD
Sbjct: 49  LKEISMEDCLTKVYNYRTIIEIIERQIKYSNCKGETFCILMIDIDDFKSVNDNFGHVFGD 108

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +++  +S ++        +VGR GGEEF      +   EA  ++  +RK IE  +     
Sbjct: 109 EILIKISKEIKKNIRKNDYVGRFGGEEFIIIFNNTKLSEAIRVSERIRKSIEGLEF---- 164

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             S+ ITIS G+ E  + E    II  AD  LY AK  G+NR +C+
Sbjct: 165 FRSLKITISGGVKEYSN-ESCKEIIDAADNFLYKAKGLGKNR-ICY 208


>gi|320158828|ref|YP_004191206.1| extracellular solute-binding protein family 3/GGDEF
           domain-containing protein [Vibrio vulnificus MO6-24/O]
 gi|319934140|gb|ADV89003.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio vulnificus MO6-24/O]
          Length = 457

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 15/171 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
           +EL ++   + QLS+ D L+ + N   F+  L + + +   +S++ FDID FK+IND++G
Sbjct: 287 RELQLANENLLQLSQQDYLTQISNRRHFMEQLKNLSPEAVSVSVLIFDIDDFKRINDSYG 346

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD VI  ++ Q+     +     R+GGEEFA  A G +  +A  LA  +  ++E   
Sbjct: 347 HATGDLVIQNVATQVDETLPSDTLYARIGGEEFAIVAFGLAFTDAQALAKKVCHVVEKLT 406

Query: 208 I-NISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNR 254
             N+  G    +TIS G    C   P S     +  AD+ +Y AK+ G+N+
Sbjct: 407 FNNVPEG----VTISLG----CAYYPFSNGHIDLGMADKLMYQAKRLGKNQ 449


>gi|167905123|ref|ZP_02492328.1| hypothetical protein BpseN_22964 [Burkholderia pseudomallei NCTC
           13177]
          Length = 441

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 11/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           + LF ++  + + +  D L+ + N S F             +N  L++V  D+D+FKQ N
Sbjct: 254 RRLFDAHASLMRTASHDALTMVYNRSYFNEQFERAFHYARRHNTPLALVMVDVDHFKQYN 313

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD  +A ++  L  V G    FV R GGEEFA    G+ E+ AA +A   R+ 
Sbjct: 314 DTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPGADERGAAAIAERARQA 373

Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
           +E  +I   + P  ++T+SAG A       E    +I  AD ALY AK  GRN
Sbjct: 374 VERLRIAADTAPG-YVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRN 425


>gi|152995887|ref|YP_001340722.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150836811|gb|ABR70787.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 368

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 106/236 (44%), Gaps = 24/236 (10%)

Query: 40  ATVIFIANIFLFYIG---LTPFYGLEYILVENLSLVIISITISLLLG------YISGSIL 90
           A  IFI +I LF+     L   Y  E+       L+ + +TI  L G      Y S   L
Sbjct: 138 AAFIFIVSIMLFFPNDQMLLTTYSYEF----KTRLIYVFLTIVTLSGLYEVARYRSFMRL 193

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLS-IVFFDIDYFKQIN 143
           K +   Y   +Q    D L+ L N       L        +  K+S I   DID FK IN
Sbjct: 194 KTMKDKYEYQAQF---DYLTFLPNRRGIQKILNKDQRQRKHTHKVSTIAILDIDKFKVIN 250

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGH VGD V+   S  L     +   + R GGEEF      ++EQEA +L   +R+ +
Sbjct: 251 DEFGHEVGDMVLKHTSRVLRDCIRSQDSLARWGGEEFLLLLPETTEQEALVLLESIRECV 310

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           E +        SI IT+S G+ E       +  I  +D +LY AK++GRN V  ++
Sbjct: 311 EETPFG-HGNISIFITLSVGLCETSPDVDFNETIKFSDVSLYRAKQAGRNTVFAYT 365


>gi|160899825|ref|YP_001565407.1| diguanylate cyclase [Delftia acidovorans SPH-1]
 gi|160365409|gb|ABX37022.1| diguanylate cyclase [Delftia acidovorans SPH-1]
          Length = 387

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 15/211 (7%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           +I L  F+G   ILV   SLV   + I LL   ++G+   E      RI+Q++  D L+ 
Sbjct: 174 FINLANFHG-TVILV---SLVEGVMAIMLLAMSMTGT---ERHRREERIAQIAARDPLTA 226

Query: 112 LLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           L N  A         E+ S      ++  DID+FKQ+ND  GH  GD+++  LSD +   
Sbjct: 227 LDNRRALYLRAPQLLEQASAASPCALLLIDIDHFKQVNDLHGHDAGDRLLLTLSDLIRSA 286

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGI 224
                   RLGG+EF           A  L  DLR+        +   P  + ++I A +
Sbjct: 287 LPRGALAARLGGDEFVIVLRSVDHAAAQALGQDLREAFAQQARTLFETPEPVSLSIGATL 346

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++   E +S  + +AD+ALY +K+ GR+R+
Sbjct: 347 FDQPGVE-LSHWLKQADEALYTSKRKGRDRM 376


>gi|120403376|ref|YP_953205.1| diguanylate cyclase [Mycobacterium vanbaalenii PYR-1]
 gi|119956194|gb|ABM13199.1| diguanylate cyclase [Mycobacterium vanbaalenii PYR-1]
          Length = 362

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 102/206 (49%), Gaps = 18/206 (8%)

Query: 64  ILVENLSLVIISITISLLLGYISG------SILKELFISYNRISQLSRIDCLSGLLNHSA 117
           ILVE   + I++ + +L+LG   G      +++  L I        S  D L+GLLN  +
Sbjct: 154 ILVETDDIRIVAGSAALVLGLNLGVPFGIHTLVHSLHIDLRD----SDRDPLTGLLNRRS 209

Query: 118 F-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           F       I++    N  +++   D+D FK +ND  GH VGD  +  ++  L        
Sbjct: 210 FYNMVRDLIAARRQVNTPVNVTMVDLDDFKLLNDTHGHAVGDAALVSVAAVLQEHTEPGT 269

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            +GRLGGEEF  A + ++ + A I A  +R+ I  +   I++   I  T  A  AE  H 
Sbjct: 270 VLGRLGGEEFVIADVDAAARHA-ITAERIRRGIAATPFQITASFGICSTTVAAGAEIDHP 328

Query: 231 EPISTIIYRADQALYVAKKSGRNRVV 256
             +  +I  AD A+Y +K++G NRVV
Sbjct: 329 GFLDRLIRAADAAMYQSKRAGGNRVV 354


>gi|66045833|ref|YP_235674.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63256540|gb|AAY37636.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 534

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 113/259 (43%), Gaps = 33/259 (12%)

Query: 23  SPHTFMIYFSIFFSIFIATVIFIANIFLFYI--------GLTPFYGLEYILVENLSLVII 74
           SPH    Y       ++ ++  +A  + F +        GL   Y  ++   E    V+ 
Sbjct: 6   SPHMVRKYLYTVLWFYVLSIFLLAIAWEFELESLAMAAMGLP--YDQDFENAERWRFVLT 63

Query: 75  SITISLLLGYIS----GSILKELFISYNRI-------SQLSRIDCLSGLLN----HSAFI 119
           S   ++L   I       ++++L  SYN +         L+R D LSGLLN    H   +
Sbjct: 64  STGFAVLSMVIPFILLKRLMQQLHSSYNDLLESQALSESLARHDPLSGLLNRRVFHEQLV 123

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGE 178
           + L     + ++   D+D FK IND  GH  GD  I  +++ L     G    V RLGG+
Sbjct: 124 ARLQQPATQTAVFLIDLDKFKLINDTHGHAAGDAAICAVAESLRDATVGWQASVARLGGD 183

Query: 179 EFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAG--IAERCHKEPIST 235
           EF  A  G  S  E A LA ++   I  S + +   P + ++ + G  IA     +P   
Sbjct: 184 EFGLAVSGDFSHAELAPLAENILAKIAASSVGL---PRVALSATLGIAIAPMDGSDP-DL 239

Query: 236 IIYRADQALYVAKKSGRNR 254
           ++ RAD A+Y  K  GR R
Sbjct: 240 LLQRADSAMYRGKAGGRAR 258


>gi|262380496|ref|ZP_06073650.1| WspR [Acinetobacter radioresistens SH164]
 gi|262297942|gb|EEY85857.1| WspR [Acinetobacter radioresistens SH164]
          Length = 566

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 90/171 (52%), Gaps = 24/171 (14%)

Query: 99  RISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152
           ++  ++  D L+G+ N  A    I  L  + ++LS   ++  DIDYFKQ+ND +GH +GD
Sbjct: 405 QLRNIANTDILTGVSNRLALDEHIQYLEKHVKQLSQTCLILVDIDYFKQVNDQYGHIIGD 464

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFA--------AAALGSSEQEAAILANDLRKIIE 204
           +VI  ++ QL     +   + R GG+EF          A L   E+        +R  ++
Sbjct: 465 QVIQLVASQLKKSVRSSDLIIRYGGDEFIIFLEYVEFGAVLKVVEK--------IRAEVQ 516

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + + + +G SI +++S G+A     E    ++ +ADQAL+ AK +GRN V
Sbjct: 517 QAHLKLENGNSISVSVSIGVA--TGAENWLELLEKADQALFRAKAAGRNSV 565


>gi|297570048|ref|YP_003691392.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925963|gb|ADH86773.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2]
          Length = 285

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 75/144 (52%), Gaps = 9/144 (6%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LSI+  DID+FK++ND  GH  GD+ +  L  ++         + R GGEE       + 
Sbjct: 141 LSILLLDIDHFKEVNDKHGHLAGDRTLLNLVQEIKGNLRETDQLARYGGEEILIMLPHTP 200

Query: 189 EQEAAILANDLRKIIENSQINISSG-------PSIHITISAGIAE-RCHKEPISTIIYRA 240
           E  A ++A  +R+ I    I +++G       P I IT+S G+A  R        +  +A
Sbjct: 201 EDGAKLVAEKIRRGIAGG-IMVAAGEREDEGWPDISITVSIGVAGLRDEFSSGKELFAKA 259

Query: 241 DQALYVAKKSGRNRVVCFSDIENN 264
           DQALY AKK+GRNR V  S++E  
Sbjct: 260 DQALYRAKKTGRNRCVAASELEQK 283


>gi|261823051|ref|YP_003261157.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
 gi|261607064|gb|ACX89550.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
          Length = 526

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 82/164 (50%), Gaps = 17/164 (10%)

Query: 107 DCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D ++ LLN     S L  +    +  +++  DID FK+IND  GH VGD VI +LS  + 
Sbjct: 368 DPMTELLNRRGLDSVLRYWQMGQKSFAVIALDIDRFKRINDTHGHDVGDTVIRYLSQLIR 427

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   + R GGEEF      +S+ EA  +A  LR+  + S I +      ++TIS G
Sbjct: 428 TSSREADILCRSGGEEFLILLPETSQDEAIKIAERLRQRTQESTIPVVG----NMTISLG 483

Query: 224 IAERCHKEP------ISTIIYRADQALYVAKKSGRNRVV-CFSD 260
           +A     EP      I      AD+ALY AK+ GRNRVV   SD
Sbjct: 484 VA---LWEPGTSGMSIERTFKLADEALYQAKQEGRNRVVSALSD 524


>gi|226940890|ref|YP_002795964.1| hypothetical protein LHK_01971 [Laribacter hongkongensis HLHK9]
 gi|226715817|gb|ACO74955.1| GGDEF domain protein [Laribacter hongkongensis HLHK9]
          Length = 879

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/127 (36%), Positives = 73/127 (57%), Gaps = 2/127 (1%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           ++V  DID+FK++ND+ GH VGD+V+  L+ ++         +GR+GGEEFA     +S+
Sbjct: 740 AVVMLDIDHFKRVNDSHGHAVGDQVLQELARRMQAGLRETDCLGRMGGEEFAILLPQTSQ 799

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAK 248
             A + A  L + I        +G ++ +TIS G+++ +     +   + RAD ALY AK
Sbjct: 800 DGACLFAERLCRKIAGVPFATEAG-ALVVTISLGVSQMQSDDASVDCALARADGALYAAK 858

Query: 249 KSGRNRV 255
             GRNRV
Sbjct: 859 SGGRNRV 865


>gi|170754902|ref|YP_001780010.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium
           botulinum B1 str. Okra]
 gi|169120114|gb|ACA43950.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium
           botulinum B1 str. Okra]
          Length = 892

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 14/162 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFI----SSLGSY-NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +I  L+  D L+GL N    I     ++ SY NEK +++F D+D+FK IND  GH VGD 
Sbjct: 467 KILGLAYYDSLTGLSNRKKIIETINKTINSYENEKFAVLFIDLDHFKSINDTLGHDVGDY 526

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQIN 209
           V+  +S +  ++      +GRLGG+EF       ++  +E+ A  +   L   I+  + +
Sbjct: 527 VLEKVSARFKMLLSPKNKIGRLGGDEFIIVQNITSISDAEKLACKICTTLNHSIKYKEDD 586

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           +  G SI I+I     +       ST++  AD A+Y AKK+G
Sbjct: 587 LFIGASIGISIYPEDGKDT-----STLMKNADAAMYAAKKNG 623


>gi|149194719|ref|ZP_01871814.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Caminibacter mediatlanticus TB-2]
 gi|149135142|gb|EDM23623.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Caminibacter mediatlanticus TB-2]
          Length = 610

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 91/162 (56%), Gaps = 10/162 (6%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           S ID L+   N    I+ + + N +K +++ FDID FK+IND +GH +GD V+  L+  +
Sbjct: 207 SLIDPLTNTYNRK-IINRIENENIKKTALLIFDIDNFKKINDTYGHNIGDIVLKNLTQTI 265

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI---IENSQINISSGPSIHIT 219
                +  ++ R GGEEF    L + EQ+ A+    + KI   I N+ INI +   + IT
Sbjct: 266 KSQIRSNDYLIRYGGEEF-LLILNNIEQKDAL--KKIEKIFNTIRNTPINIGNK-KLFIT 321

Query: 220 ISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260
           IS G+     KE  I   I +ADQ LY AK++G+N+   +S+
Sbjct: 322 ISGGVHLEPEKEKNIFEAIKKADQELYKAKRTGKNKYCIYSE 363


>gi|94496367|ref|ZP_01302944.1| Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           domain [Sphingomonas sp. SKA58]
 gi|94424113|gb|EAT09137.1| Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           domain [Sphingomonas sp. SKA58]
          Length = 364

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 92/183 (50%), Gaps = 13/183 (7%)

Query: 84  YISGSILKELFISYNRISQLS---RIDCLSGLLNH-------SAFISSLGSYNEKLSIVF 133
           Y+  ++   L ++ +   QL    R D L+ +LN        S  I+    +   LS+V 
Sbjct: 178 YVGTAVSAVLVVAGDLAQQLRSQMRHDPLTEVLNRRGLEEAASQAIAQARRHGRPLSLVI 237

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK +NDN GH  GD  +   +  L++       VGR+GG+EF      S  Q AA
Sbjct: 238 CDLDGFKALNDNHGHIAGDHALKGFAQLLILAVRRGDIVGRMGGDEFGLLLQDSDAQAAA 297

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGR 252
            +   +R  +E + +++   P   +  S G+A    ++  +  +++RAD+ALY AKK G+
Sbjct: 298 DVMERVR--LEVAHLSLPKVPESTLRASFGVAALLPEDLTLEDMVHRADEALYSAKKLGK 355

Query: 253 NRV 255
           NRV
Sbjct: 356 NRV 358


>gi|51246057|ref|YP_065941.1| hypothetical protein DP2205 [Desulfotalea psychrophila LSv54]
 gi|50877094|emb|CAG36934.1| hypothetical protein DP2205 [Desulfotalea psychrophila LSv54]
          Length = 516

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 95/188 (50%), Gaps = 22/188 (11%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNE-KLSIVFFDIDYFK 140
            + +EL     ++  L+ ID L+   NH  F ++L       S N   +S++ FDID FK
Sbjct: 327 KLTEELAKKNRQLETLANIDGLTNCYNHRYFQNALDQELSRSSRNSLAISLIMFDIDNFK 386

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           + ND++GH  GD ++  L+  +         + R GGEEF      + +++A I+A  +R
Sbjct: 387 RFNDSYGHQAGDFILCELTRLIQEQIRKDDVLARYGGEEFVIILPETEKEDALIVAEKVR 446

Query: 201 KIIENSQINISSGPSIH----ITISAGIAERCHKEPISTI-----IYRADQALYVAKKSG 251
              E       S  +IH    ITIS G+A   H   IS +     I + D ALY AK++G
Sbjct: 447 HACEE-----HSFQNIHKTHQITISLGVATE-HSAQISPLNKTSFIDKTDLALYSAKENG 500

Query: 252 RNRVVCFS 259
           RN+VV +S
Sbjct: 501 RNKVVVYS 508


>gi|84387541|ref|ZP_00990559.1| GGDEF family protein [Vibrio splendidus 12B01]
 gi|84377589|gb|EAP94454.1| GGDEF family protein [Vibrio splendidus 12B01]
          Length = 338

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 81/155 (52%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D  + L N  +F   I +L    E L ++  DID+FK  ND +GH  GD V+  ++ +L 
Sbjct: 182 DSTTTLYNRRSFDRDIETLCEAKESLCLILLDIDHFKNFNDTYGHLFGDMVLKGIARKLK 241

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221
           +     +   R GGEEFA      S + A  LA+  R+ +E   I +  SG  +  IT S
Sbjct: 242 LSCREGISAYRFGGEEFALIVPNKSLRIARQLADTNRRSLEKLSIKDRRSGQQVGSITAS 301

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+AE    E   ++I RAD+ LY AK  GRNRV+
Sbjct: 302 FGVAELEPGESAQSLIERADKLLYEAKSLGRNRVM 336


>gi|238782955|ref|ZP_04626983.1| hypothetical protein yberc0001_1070 [Yersinia bercovieri ATCC
           43970]
 gi|238716158|gb|EEQ08142.1| hypothetical protein yberc0001_1070 [Yersinia bercovieri ATCC
           43970]
          Length = 499

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 80/158 (50%), Gaps = 9/158 (5%)

Query: 104 SRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           ++ D ++GL N     ++L   G   +  S++  DID+FK IND +GH +GD+VI  L+ 
Sbjct: 346 AQTDPMTGLYNRRGLATALEPIGQLGQHFSVIALDIDHFKLINDTYGHDIGDEVIKQLAT 405

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHIT 219
           Q+         + R GGEEF     G++   A  +AN LR  +    I NI       IT
Sbjct: 406 QIRDSSRDTDILCRSGGEEFLMLLPGTTLDVATQVANRLRHNVAMMAIANIRP-----IT 460

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IS G+A    +      +  AD ALY AK+ GRNRV  
Sbjct: 461 ISLGVAYWSGEGMPEDALKLADAALYRAKQQGRNRVAV 498


>gi|300714940|ref|YP_003739743.1| Diguanylate cyclase [Erwinia billingiae Eb661]
 gi|299060776|emb|CAX57883.1| Diguanylate cyclase [Erwinia billingiae Eb661]
          Length = 427

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 87/160 (54%), Gaps = 10/160 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++  +R D L+GL N +AF  +L +        ++++++F D+D FK++ND +GH  GD 
Sbjct: 246 LAHQARHDALTGLPNRTAFEQALHTLMNNPQTADRVAVLFIDVDRFKEVNDTYGHAAGDN 305

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINIS 211
           V+   + +L         V RLGG+EFA   A + + EQ A +  N +  ++E   I ++
Sbjct: 306 VLTETAHRLRGRLRKDDLVARLGGDEFAVLLAGIENGEQAARMAENVIEAMLE--PIRLT 363

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
            G ++  ++S G+A   +      +I +AD A+Y  K+ G
Sbjct: 364 DGKTVAQSLSIGVALAKNHRTGEAMIAQADAAMYHIKELG 403


>gi|289679306|ref|ZP_06500196.1| GGDEF [Pseudomonas syringae pv. syringae FF5]
 gi|330975177|gb|EGH75243.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 355

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 114/240 (47%), Gaps = 15/240 (6%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV---IISIT 77
           S S    +I  S    ++    + +A   L +  L+P  G++   V  + +    I S++
Sbjct: 97  SLSVAVMIILCSTLLVVYTRDYLVVA--ILAWCILSPAQGVDTDSVAAVFMTLFFITSVS 154

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFF 134
           +  ++ +     L+ +    ++  +LS  D L+ +LN  A + +L ++   N     +  
Sbjct: 155 LGSVMNHTYTRTLRTVLSLEHQFRELSLTDDLTAILNRRALMQALDNHVLNNSAGYFLML 214

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID FK IND FGH  GD+ +  ++  L    G+  F GR+GGEEF       SE +A  
Sbjct: 215 DIDDFKTINDQFGHDAGDQALRVMAGCLQKTVGSLAF-GRMGGEEFGVILPMCSEDDARD 273

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
              +L + I  S   ++  P   +T SAG+A+       S ++  AD  LY AK+ G++R
Sbjct: 274 YVLNLLECIRKS---LAVSP---LTCSAGLADIPAAADSSEVLKTADINLYQAKRGGKDR 327


>gi|237731472|ref|ZP_04561953.1| diguanylate cyclase domain-containing protein [Citrobacter sp.
           30_2]
 gi|226907011|gb|EEH92929.1| diguanylate cyclase domain-containing protein [Citrobacter sp.
           30_2]
          Length = 308

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 83/165 (50%), Gaps = 6/165 (3%)

Query: 104 SRIDCLSGL-----LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S ID L+GL     L+ S     L +    L I+  DID FK +ND +GH VGD V+  L
Sbjct: 129 SNIDALTGLPGRRMLDESFDRQLLDAEPLNLYILLLDIDRFKYVNDTYGHLVGDVVLRAL 188

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L+          R GGEEF       ++++A      L ++I   +I  + G  I I
Sbjct: 189 ASNLLSWTRYDEAAYRYGGEEFIIIIRTKTDEQACQAGLRLCRLIGQKKIPYAEG-EIGI 247

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++AGI      E + T + RAD+A+Y  K++GRNR +   + E 
Sbjct: 248 TVTAGITRVQQGETLDTALGRADRAMYQGKQTGRNRCMFMDENEQ 292


>gi|27381658|ref|NP_773187.1| hypothetical protein bll6547 [Bradyrhizobium japonicum USDA 110]
 gi|27354827|dbj|BAC51812.1| bll6547 [Bradyrhizobium japonicum USDA 110]
          Length = 830

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 104/199 (52%), Gaps = 18/199 (9%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL- 129
           L+ +S++  L+L   +    + L ++  R+ +L++ D L+GL N + F++ L   N +L 
Sbjct: 371 LLTLSLSAYLMLASRNS---RRLSLANRRVLELAQTDILTGLPNRAFFLARLDDLNGQLN 427

Query: 130 ------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                 SI+  D+D FK +ND+ GH  GD ++  ++ +L         + RLGG+EFA  
Sbjct: 428 DGGSTFSILMLDLDRFKNVNDSLGHGAGDALLRQVAQRLKSALRATDVLARLGGDEFAII 487

Query: 184 ALGSSEQE--AAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRA 240
             G+ +Q   +  LA  + K++  ++  +  G  + I  S GIA    H      ++ +A
Sbjct: 488 QEGAEDQRTCSTELAARIAKLV--AEPFLLPGHRVEIGTSIGIAIAPDHGSDQEQLLKKA 545

Query: 241 DQALYVAKKSGRNRVVCFS 259
           D ALY +K +GRN   CF+
Sbjct: 546 DLALYRSKSAGRN---CFT 561


>gi|322435543|ref|YP_004217755.1| diguanylate cyclase with PAS/PAC sensor [Acidobacterium sp.
           MP5ACTX9]
 gi|321163270|gb|ADW68975.1| diguanylate cyclase with PAS/PAC sensor [Acidobacterium sp.
           MP5ACTX9]
          Length = 620

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 9/169 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+ L N   F       ++        LS++  D+D+FK+ ND +GHP GD
Sbjct: 435 LEELAGNDELTRLANRRTFNRMLTQEVARHARAKNSLSMLMVDVDFFKKYNDRYGHPEGD 494

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +  +++ + +      F  R+GGEEF      + +  A   A  +   IE+ QI    
Sbjct: 495 VCLRMVAESIQIASRASDFAARVGGEEFTVLLPDTDQAGAEQAAQRILSHIESLQIRHEG 554

Query: 213 GPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            P  ++T+S G A    +     + +I +AD+ALY +KK+GRNR+   +
Sbjct: 555 SPFGYVTVSIGAATWPPEFVADEAYLIQQADRALYESKKTGRNRLTSMT 603


>gi|255320299|ref|ZP_05361484.1| ggdef domain protein [Acinetobacter radioresistens SK82]
 gi|255302738|gb|EET81970.1| ggdef domain protein [Acinetobacter radioresistens SK82]
          Length = 565

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 90/171 (52%), Gaps = 24/171 (14%)

Query: 99  RISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152
           ++  ++  D L+G+ N  A    I  L  + ++LS   ++  DIDYFKQ+ND +GH +GD
Sbjct: 404 QLRNIANTDILTGVSNRLALDEHIQYLEKHVKQLSQTCLILVDIDYFKQVNDQYGHIIGD 463

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFA--------AAALGSSEQEAAILANDLRKIIE 204
           +VI  ++ QL     +   + R GG+EF          A L   E+        +R  ++
Sbjct: 464 QVIQLVASQLKKSVRSSDLIIRYGGDEFIIFLEYVEFGAVLKVVEK--------IRAEVQ 515

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + + + +G SI +++S G+A     E    ++ +ADQAL+ AK +GRN V
Sbjct: 516 QAHLKLENGNSISVSVSIGVA--TGAENWLELLEKADQALFRAKAAGRNSV 564


>gi|225851410|ref|YP_002731644.1| diguanylate cyclase/phosphodiesterase [Persephonella marina EX-H1]
 gi|225645904|gb|ACO04090.1| diguanylate cyclase/phosphodiesterase [Persephonella marina EX-H1]
          Length = 621

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 89/170 (52%), Gaps = 9/170 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF-DIDYFKQINDNFGHPVGDKVIAFL 158
           + Q +  D L+G+ N +         + K  IV   DID+FK+IND +GH +GD+V++  
Sbjct: 218 LKQRAYTDSLTGVFNRNYLEEITDVIDLKDYIVMLVDIDHFKRINDTYGHEIGDRVLSKF 277

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL--ANDLRKIIENSQINISSGPSI 216
           ++ +         + R GGEEF        +Q+   L  A  L   IEN++    SG  I
Sbjct: 278 AELIKQNLRRDDIIIRYGGEEFLVLLKNYRKQKKDSLKVAERLMDTIENTEF---SG--I 332

Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            IT+S GI     K   ++  I +AD ALY AK+ GRNR+  F++ ++++
Sbjct: 333 RITVSIGINMDTDKSRNLTDAIKKADTALYKAKREGRNRIEIFTEAKDDS 382


>gi|218962133|ref|YP_001741908.1| hypothetical protein CLOAM1875 [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730790|emb|CAO81702.1| hypothetical protein CLOAM1875 [Candidatus Cloacamonas
           acidaminovorans]
          Length = 321

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 95/181 (52%), Gaps = 12/181 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142
           KEL  +   + + ++ D L+GL N        +   ISSL + N   ++   DID FK++
Sbjct: 142 KELSNANIGLKRQAKYDSLTGLYNRWVMLEMLNKEIISSLET-NRGFAVGIADIDDFKKV 200

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD V+  L+   +        V R GGEEF      ++E  A I+   +RK 
Sbjct: 201 NDTYGHDCGDLVLVKLTQSFLQKIRVTDSVCRWGGEEFLFLFSETTESGAMIVVERIRKA 260

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSD 260
           IE   IN   G  I +TI+ G++    ++ + +  ++ RAD+A+Y  K SG+N+ V +S+
Sbjct: 261 IEELIINY-KGNQIKVTITIGVSFYNGQDHLDSKELVDRADKAMYEGKSSGKNKAVLYSN 319

Query: 261 I 261
           I
Sbjct: 320 I 320


>gi|323977864|gb|EGB72950.1| diguanylate cyclase domain-containing protein [Escherichia coli
           TW10509]
          Length = 564

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 96/201 (47%), Gaps = 19/201 (9%)

Query: 74  ISITISLLLG----------YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL- 122
           ISI ++LL            Y+   ++  +++  + +   +  D L+ L N  A      
Sbjct: 358 ISIALTLLWALFTSMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTHLYNRGALFEKAR 417

Query: 123 ------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                  ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+G
Sbjct: 418 QLAKLCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRALDVAGRVG 477

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPIS 234
           GEEF     G+S  +AA +A  +R  +   ++ I+   +I I+ S G+  +E        
Sbjct: 478 GEEFCVILPGASLTQAAEVAERIRLKLNEKEMLIAKSSTIRISASLGVSSSEETGDYDFE 537

Query: 235 TIIYRADQALYVAKKSGRNRV 255
            +   AD+ LY+AK++GRNRV
Sbjct: 538 QLQSLADRRLYLAKQAGRNRV 558


>gi|307130239|ref|YP_003882255.1| GGDEF domain-containing protein [Dickeya dadantii 3937]
 gi|306527768|gb|ADM97698.1| GGDEF domain protein [Dickeya dadantii 3937]
          Length = 544

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 29/221 (13%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR-----------------ID 107
           L EN+S ++++I +   +  + G +LK++ ++      +SR                 +D
Sbjct: 322 LTENISAMLLNIMVLFAMFVLGGFVLKQIRLTVKNKEAISRLHQEESDKNKVLQKLALVD 381

Query: 108 CLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIA-FLS 159
            L+ L N   F      SL    E+   LS++  D+D+FK+ ND +GH +GD+ +     
Sbjct: 382 PLTKLANRRRFDLYLDQSLTRAREEGGLLSLIMLDVDFFKRYNDTYGHVLGDRCLTQLGG 441

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG--PSIH 217
               ++        R GGEEFA    G + ++AA+    + + +    I   +   P + 
Sbjct: 442 VLNGLLLPDGALAARYGGEEFAIILPGMNGEQAAVYGERVVESVRRCAIQHQASLLPRLV 501

Query: 218 ITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVV 256
           +T+S G+       P  I  +   ADQALY+AKK GR+R V
Sbjct: 502 VTVSVGVYSHSSDNPCDIQRLKEGADQALYLAKKKGRDRCV 542


>gi|300713215|ref|YP_003739254.1| diguanylate cyclase [Erwinia billingiae Eb661]
 gi|299060286|emb|CAX53536.1| diguanylate cyclase [Erwinia billingiae Eb661]
          Length = 528

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 89/175 (50%), Gaps = 10/175 (5%)

Query: 88  SILKELFISYNRISQLS---RIDCLSGLLNHSAFISSLGSYNEKLS--IVFFDIDYFKQI 142
           ++   L +  N++S L+   R D L+GLLN   F + +  +    +   +  DID+FK+I
Sbjct: 343 AVYHHLQMMINQVSSLTDETRTDPLTGLLNRRGFATLIRQHARTPNHCAIAVDIDHFKKI 402

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD V+  L+  L     +   V R GGEEF      +   +AA  A  +R +
Sbjct: 403 NDRLGHDAGDAVLISLAGLLRTACRSSDIVSRSGGEEFVIFMPDTQLSDAAATAERVRHL 462

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           +E S    +      IT+SAG+A     +  +  ++R AD ALY AK +GRN V+
Sbjct: 463 VETSLFPYAG----QITVSAGVAALIDVQGSTEGLFRQADMALYEAKGAGRNIVI 513


>gi|317129953|ref|YP_004096235.1| diguanylate cyclase [Bacillus cellulosilyticus DSM 2522]
 gi|315474901|gb|ADU31504.1| diguanylate cyclase [Bacillus cellulosilyticus DSM 2522]
          Length = 759

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 74/140 (52%), Gaps = 11/140 (7%)

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           ISS   Y E  + + FDID+FK++ND +GH +GD+VI  ++  +     +     R GGE
Sbjct: 626 ISSFDKY-ESGAFILFDIDHFKRVNDQYGHQIGDEVIIQVAKMISSTIKSKDIAARWGGE 684

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PIST 235
           E A       + EA  +A  +RK        ++   S H+T+S+G++     +    +  
Sbjct: 685 EIAIYLPEEDKVEAMAIAEIIRK-------KVAQHSSPHVTVSSGVSSWSKTDNQCSLKR 737

Query: 236 IIYRADQALYVAKKSGRNRV 255
           +   AD+ALY AK +GRNRV
Sbjct: 738 LFQDADKALYKAKSAGRNRV 757


>gi|262198873|ref|YP_003270082.1| diguanylate cyclase [Haliangium ochraceum DSM 14365]
 gi|262082220|gb|ACY18189.1| diguanylate cyclase [Haliangium ochraceum DSM 14365]
          Length = 316

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 93/182 (51%), Gaps = 12/182 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDI 136
           +++GS ++  +  +  I +++ ID L+G  N   FI  L         + + L++V  D+
Sbjct: 129 FLTGSNIESAY--HEEIYRMTIIDGLTGAYNKRYFIDFLERELARAHRHEQPLTLVMLDL 186

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK++ND+ GH  GD V+  LS ++           R GGEEFA    G++ +     A
Sbjct: 187 DHFKRVNDDLGHLAGDAVLKELSARVRPRIRREDLFARYGGEEFAVILTGTTLEGGVRFA 246

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNR 254
             +R ++      + +G  I +T S G +   H+  +    +I+RAD+ LY AK  GRNR
Sbjct: 247 EHVRSLVCERPF-LFNGQPIDVTTSLGASCMFHEPGVDAEQLIHRADENLYKAKDRGRNR 305

Query: 255 VV 256
            V
Sbjct: 306 SV 307


>gi|224369321|ref|YP_002603485.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223692038|gb|ACN15321.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 341

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 13/173 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           +EL      + Q++ ID L+GL N       L         Y     ++  DID+FK +N
Sbjct: 165 RELEKKNRELEQIAIIDQLTGLFNRRKLDEMLSRELIRSRRYGNSFGLIMVDIDFFKTVN 224

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH +GD+V+   +DQL         +GR GGEEF      + +    +LA  LR  +
Sbjct: 225 DTHGHQIGDQVLQRFADQLKQGVREVDVLGRWGGEEFLIICPETIKDYLILLAEKLRIAV 284

Query: 204 ENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++  +     P +   T S G+      + + T++ + D+ALY+AK+ GRNRV
Sbjct: 285 QSIAV-----PGVGEKTASFGVTVYEKGDNLDTLVDKVDKALYLAKEKGRNRV 332


>gi|206563403|ref|YP_002234166.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
 gi|198039443|emb|CAR55410.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
          Length = 516

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 90/168 (53%), Gaps = 12/168 (7%)

Query: 100 ISQLSRIDCLSGLLN----HSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVG 151
           I  L+R D L+GL N    H+A    L       +   +I++ D+D FK IND FGH  G
Sbjct: 338 IRHLARHDALTGLPNRHELHAALKRMLARRPRLPSPAFAIMYLDLDGFKSINDRFGHQAG 397

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++++L           R+GG+EF  A   ++    +ILA  + + I ++   +S
Sbjct: 398 DEVLTQVAERLGKTLPPGELAARIGGDEFVVAIDDTTMHACSILAARIIRQI-SAPYGLS 456

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +G ++ I IS GIA +  H  P   +I +AD ALY AK +G+  + CF
Sbjct: 457 NGETVCIGISIGIALDDGHGSP-DELIRQADSALYDAKSAGKG-IYCF 502


>gi|71278624|ref|YP_271328.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71144364|gb|AAZ24837.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 266

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 8/164 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVG 151
           +  QL+  D L+ L N    +  L           E LSI+  D+DYFK+IND +GH  G
Sbjct: 100 KYQQLAHFDPLTQLSNRRDALGILKQEQARMIRSKEPLSIIICDVDYFKKINDQYGHNAG 159

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  L+            V R GGEEF      +  + A + A  +++ ++N  ++  
Sbjct: 160 DAVLIELAKIFTSNIREQDCVARWGGEEFLFILPQTLARNANVFAVKIQEKLQNHLVDY- 218

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G  I +++S GI +    + I  II  AD+ LY AK SGRN++
Sbjct: 219 QGKEIKVSVSMGIEQFNGNQNIDEIINSADKYLYQAKNSGRNQI 262


>gi|119775136|ref|YP_927876.1| GGDEF family protein [Shewanella amazonensis SB2B]
 gi|119767636|gb|ABM00207.1| diguanylate cyclase [Shewanella amazonensis SB2B]
          Length = 347

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 101/211 (47%), Gaps = 12/211 (5%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILK---ELFISYNRISQLSR---IDCLSGLLN 114
           LE +L    +LV  S  I     Y +G + K   E+     R+++  +    D L+G LN
Sbjct: 136 LEQVLNLVRTLVKESDAIRESTSYFTGQLAKAQQEIDTLKRRLAESEKDVFFDALTGCLN 195

Query: 115 HSAFISSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
             AF + L        E   ++  DID+FK  NDN+GH +GD+V+  +  +L       +
Sbjct: 196 RRAFDADLAGLLALAPEGCCLILCDIDHFKHFNDNYGHQLGDQVLKLVGKRLTEACRDGV 255

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA--GIAERC 228
              R GGEEFA     S+ + A  LA  +R+ +E   +      +    ISA  G+A+  
Sbjct: 256 KCYRYGGEEFALLVPSSNLRIARQLAEGIRRGVEKLTLKDRRRDARIDNISASFGVAQWQ 315

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            K     +I  +D+ LY AK+ GRNRV+  S
Sbjct: 316 PKMTARNLIEHSDKQLYEAKRLGRNRVMPIS 346


>gi|292669740|ref|ZP_06603166.1| sensory box/GGDEF domain protein [Selenomonas noxia ATCC 43541]
 gi|292648537|gb|EFF66509.1| sensory box/GGDEF domain protein [Selenomonas noxia ATCC 43541]
          Length = 595

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 87/173 (50%), Gaps = 12/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQIN 143
           +EL  +  R+SQL+  D L+ LLN       L      S  EK  LS++  DID+FK IN
Sbjct: 415 EELHTANQRLSQLASRDALTNLLNRREMERLLNAAVEHSQQEKTPLSVILMDIDHFKGIN 474

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH +GDKV+  +++ +           R GG+EF     G+    A  +   +R+ +
Sbjct: 475 DTYGHDMGDKVLLTVAETISHTIRGSDAGCRWGGDEFFIILQGAPLTVAGRVGERIRRKV 534

Query: 204 ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           E  ++        HITIS G+A     ++    +   AD+ALY AK +GRN V
Sbjct: 535 EGFEMPFHQ----HITISVGVASFDPDRDNELQLFKNADEALYQAKAAGRNAV 583


>gi|169628927|ref|YP_001702576.1| diguanylate cyclase/phosphodiesterase [Mycobacterium abscessus ATCC
           19977]
 gi|169240894|emb|CAM61922.1| Diguanylate cyclase/phosphodiesterase [Mycobacterium abscessus]
          Length = 363

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 22/165 (13%)

Query: 102 QLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           +L+R D L+GLLN      A+ +++G     +++V  D++ FKQIND FGH VGD+V+  
Sbjct: 206 RLARHDVLTGLLNRRGLQEAYEATVGVPGMHVTVVVVDLNLFKQINDTFGHHVGDQVLQR 265

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            + +L  V G    + RLGG+EF    +G +         D ++ +E + +N S+   + 
Sbjct: 266 TAHRLRSVVGPDALLARLGGDEFGIVVVGDAPPHI-----DYQRAVEEA-LN-SASEDVP 318

Query: 218 ITISAGIAERCHKE----------PIST-IIYRADQALYVAKKSG 251
           ++ S G+A     E          PI T ++  AD A+Y AKK+G
Sbjct: 319 VSASVGVAAAILPESDRTTIHTLGPIVTHLLVEADGAMYGAKKAG 363


>gi|121591683|ref|ZP_01678916.1| ggdef family protein [Vibrio cholerae 2740-80]
 gi|121546458|gb|EAX56684.1| ggdef family protein [Vibrio cholerae 2740-80]
          Length = 326

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 7/163 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGD 152
           N +  L+  D L+G  N  +  +S   +        L ++  D+D+FK IND FGH  GD
Sbjct: 143 NSLLYLASRDPLTGAHNRLSLTTSFQHFERFSDQTSLCLLVIDLDFFKSINDQFGHDTGD 202

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KV+   +     V G      R+GGEEF       S ++A  +   LR I+         
Sbjct: 203 KVLIETTRLFTQVVGDNNLY-RIGGEEFCVTLFDQSLEQAGRVCEHLRAIVSQHLFAFRE 261

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              + +TIS G+ E    + ++ ++  AD  LY AKK+GRN+V
Sbjct: 262 -KRVQVTISIGVCEYQAGDQLNDLLKFADMELYRAKKAGRNQV 303


>gi|27366949|ref|NP_762476.1| extracellular solute-binding protein [Vibrio vulnificus CMCP6]
 gi|27358516|gb|AAO07466.1| Extracellular solute-binding protein, family 3/GGDEF domain protein
           [Vibrio vulnificus CMCP6]
          Length = 457

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 15/171 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
           +EL ++   + QLS+ D L+ + N   F+  L + + +   +S++ FDID FK+IND++G
Sbjct: 287 RELQLANENLLQLSQQDYLTQISNRRHFMEQLKNLSPEAVSVSVLIFDIDDFKRINDSYG 346

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD VI  ++ Q+     +     R+GGEEFA  A G +  +A  LA  +  ++E   
Sbjct: 347 HATGDLVIQNVATQVDETLPSDALYARIGGEEFAIVAFGLAFTDAQALAKKVCHVVEKLT 406

Query: 208 I-NISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNR 254
             N+  G    +TIS G    C   P S     +  AD+ +Y AK+ G+N+
Sbjct: 407 FNNVPEG----VTISLG----CAYYPFSNGHIDLGMADKLMYQAKRLGKNQ 449


>gi|323498302|ref|ZP_08103304.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
 gi|323316730|gb|EGA69739.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
          Length = 486

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 9/167 (5%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + ++   +LS  D ++GLLN   F + +    +   ++I  FDID FK IND +GH VGD
Sbjct: 323 VEHSYFKELSAKDPMTGLLNRRGFQTFIAGVQHQRYVAIAVFDIDNFKSINDTYGHDVGD 382

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINIS 211
            VI++++DQ+V          R GGEEF    + G  E     +      I  +SQ  I 
Sbjct: 383 NVISYMADQIVASIRDCDVAARFGGEEFVVYMSGGDVESLKKSMLRVQEAICAHSQQIIE 442

Query: 212 SGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G     T+S G  + +  +      +   AD+ LY+AK SG++++V
Sbjct: 443 PG----FTVSGGVEVVDGDNASDFDQLFKAADEKLYIAKTSGKDQLV 485


>gi|319763264|ref|YP_004127201.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|317117825|gb|ADV00314.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
          Length = 334

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 93/207 (44%), Gaps = 23/207 (11%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSL---- 122
           S   + +T           ++K +F+ Y     L   S  D L+GLLN   F        
Sbjct: 115 STACLEVTQPRAFTRHQRDVVKGVFLVYQNYQNLLDYSERDALTGLLNRKTFEEQFARDA 174

Query: 123 --------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
                   G+   +  +   DID+FK +ND FGH  GD+V+  +++ L     +   + R
Sbjct: 175 GSAPAADGGADLPRPWLAVIDIDHFKSVNDRFGHLYGDEVLILVANVLRAQCKSQDRIFR 234

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPI 233
            GGEEF       +  +A  +   LR  ++         P I HIT S G A      P+
Sbjct: 235 FGGEEFVVLLRSVTLAQARQVFERLRAAMQAHAF-----PQIGHITASIGFAASQRGSPV 289

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSD 260
             ++ RADQALY AK+SGRNR VCF D
Sbjct: 290 E-VLGRADQALYHAKESGRNR-VCFYD 314


>gi|289663003|ref|ZP_06484584.1| hypothetical protein XcampvN_07945 [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 324

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 92/194 (47%), Gaps = 15/194 (7%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------I 119
           + +S +++++ ++L +GY     +++  +    + +L+ +D L+GL N           I
Sbjct: 133 QGVSTIVVTL-VTLAVGYAFSLRMQDDRVH---LEELASLDALTGLPNRRMLERALTHQI 188

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                ++   S++  D+D+FK++ND +GH  GD  ++ L+  L      P  V R GGEE
Sbjct: 189 DQRQPHDRLNSLIILDLDHFKEVNDLYGHAAGDAALSDLATILRFEVCEPHQVFRFGGEE 248

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F       S  E       LRK+I N       GP   IT+S G A    +        R
Sbjct: 249 FVVLLRAGSLAELEAATERLRKVIRNGL----RGPGGRITVSLGAARHDGETHWQDWFSR 304

Query: 240 ADQALYVAKKSGRN 253
           AD ALY+AK  GR+
Sbjct: 305 ADAALYLAKNGGRD 318


>gi|289208648|ref|YP_003460714.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
 gi|288944279|gb|ADC71978.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
          Length = 290

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 73/151 (48%), Gaps = 8/151 (5%)

Query: 106 IDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           +DC+ GL        ++G     LS++  D+D FK +ND  GH  GD  +   ++ L   
Sbjct: 138 MDCVEGL------AETVGDQARSLSVMMLDLDDFKALNDTHGHAAGDYALQSFAEILRGE 191

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
            G   + GR+GGEEF   A       A  LA  +R  +E + I    G  +H+ +S G+ 
Sbjct: 192 LGADQYAGRMGGEEFLVVAADLDLDAAKNLAERIRTSVEQT-IPRWKGEPLHLEVSIGLV 250

Query: 226 ERCHKEPIS-TIIYRADQALYVAKKSGRNRV 255
               + P +  ++  AD  LY AK  GRNRV
Sbjct: 251 VTTERWPDAGALVAAADDLLYRAKNEGRNRV 281


>gi|119900066|ref|YP_935279.1| GGDEF family protein [Azoarcus sp. BH72]
 gi|119672479|emb|CAL96393.1| GGDEF family protein [Azoarcus sp. BH72]
          Length = 475

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 7/161 (4%)

Query: 107 DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ LLN     + L    E         +++  D+D+FKQIND  GH  GD+V+  ++
Sbjct: 314 DALTQLLNRRFLPAILTRETEIARNQHKSFALLLVDVDHFKQINDVHGHDAGDRVLQQIA 373

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L+    +  FV R GGEEF    +    Q AA +A  +R+ ++     +     + +T
Sbjct: 374 SLLLNTVRSGDFVFRYGGEEFLVLLVEVDRQHAARVAEKIRQRVQQETFLLPDSRQLQVT 433

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            S G+A          +I +AD ALY AK  GRNR    +D
Sbjct: 434 ASVGVALHDGHPDYQRLINQADDALYRAKTGGRNRCEFATD 474


>gi|94971549|ref|YP_593597.1| diguanylate cyclase with GAF sensor [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553599|gb|ABF43523.1| diguanylate cyclase with GAF sensor [Candidatus Koribacter
           versatilis Ellin345]
          Length = 499

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 13/169 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           + ++  L+ +D L+G+ N   F       +     Y   LS++  DID FK++ND FGH 
Sbjct: 323 FQQVEALAYVDGLTGVYNRRFFERKITEELERAARYEGTLSVIMVDIDNFKKVNDEFGHL 382

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD+V+  ++         P    R GGEEF+     +S  +A  +A  LR +I +    
Sbjct: 383 LGDEVLRTVAQIFAGALRKPDHCCRYGGEEFSIILPETSGPKALKVAEKLRGLIADYDF- 441

Query: 210 ISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              G    ITISAG+A+   C       I+  AD  LY+AK+SGRN V+
Sbjct: 442 --PGIPRRITISAGVADFPTCGTT-RDDIVGAADNCLYLAKQSGRNCVM 487


>gi|320449442|ref|YP_004201538.1| putative response regulator protein [Thermus scotoductus SA-01]
 gi|320149611|gb|ADW20989.1| putative response regulator protein [Thermus scotoductus SA-01]
          Length = 538

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 80/165 (48%), Gaps = 13/165 (7%)

Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GLLN     + L         Y   +S+V  DID FK++ND +GHPVGD+V+
Sbjct: 376 LALTDPLTGLLNRRGLEAELPKLLALARRYQAPISVVMLDIDRFKRVNDTYGHPVGDEVL 435

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L   L           R GGEEF     G+    A  +   +R    + +++    P 
Sbjct: 436 KLLGRILQASVRREDLAVRYGGEEFLLFLYGADRLAAKEVVERIRYRFRHQRVDPIPYP- 494

Query: 216 IHITISAGIA--ERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
             +T+SAGIA  E    E  +   + +AD AL  AK++GR+RV  
Sbjct: 495 --LTLSAGIAGGEVPESEAQLEDWVLKADYALLRAKETGRDRVTM 537


>gi|311693142|gb|ADP96015.1| diguanylate cyclase [marine bacterium HP15]
          Length = 497

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 8/158 (5%)

Query: 106 IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+ L N  A+   L         Y+  L+I   DID FK+IND++GH  GD+V+  +
Sbjct: 333 TDLLTELPNREAWQERLSFEYNRWQRYSHPLTIGVLDIDLFKRINDSYGHKAGDRVLQLV 392

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           + +      T  FV R GGEEF      +   +A  + + LR+ +     +    P + +
Sbjct: 393 AREFRDRLRTTDFVARFGGEEFVVLFPETEPSDARAVVDKLREHVGKLPFHFRGEP-VTV 451

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T SAG+A     +   ++  RAD+ALY AK +GR++V+
Sbjct: 452 TFSAGLAGFIAGDTEESVFDRADRALYQAKDAGRDQVM 489


>gi|255017618|ref|ZP_05289744.1| hypothetical protein LmonF_07385 [Listeria monocytogenes FSL
           F2-515]
          Length = 311

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 15/190 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +LL+ Y    I K   +  N +++ +  D L+ L N   F    G          + LS+
Sbjct: 120 ALLVFYACNYIDKSNLVIQN-LTETAMTDSLTNLPNMRFFTQQFGWIFTKSQKRKKSLSL 178

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ 190
              DID+FK+IND  GH  G+ V+A  S  L    F       R+GGEEFA        +
Sbjct: 179 FIIDIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTE 238

Query: 191 EAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVA 247
           +AA++A+  R+ +E ++   N +SG    +T+S G+A        +  ++  ADQALY A
Sbjct: 239 QAALIADFFREEVERAKFPYNPASG---KVTVSIGVASASSNFSTTESLFEAADQALYQA 295

Query: 248 KKSGRNRVVC 257
           K++GRN++  
Sbjct: 296 KQNGRNQIAV 305


>gi|218441038|ref|YP_002379367.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp.
           PCC 7424]
 gi|218173766|gb|ACK72499.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp.
           PCC 7424]
          Length = 663

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 8/159 (5%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N     +S+          N  L ++ FDID+FK+ ND +GH  GD V+  + 
Sbjct: 503 DVLTGLYNRRYLEASIVRELHRVSRSNSTLGVILFDIDHFKRFNDTWGHDAGDAVLKAVG 562

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L           R GGEEF      +S ++    A+ L+  I++ Q++  S     IT
Sbjct: 563 NLLQESTRESDIACRYGGEEFLIIMPDASLEDTQRRAHQLQIEIKHLQVSTRSQQLESIT 622

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A    H      ++  AD+ALY AK+ GR+R+VC
Sbjct: 623 VSMGVASFPEHGLNYELLLRTADEALYRAKQQGRDRIVC 661


>gi|331007523|ref|ZP_08330688.1| hypothetical protein IMCC1989_1625 [gamma proteobacterium IMCC1989]
 gi|330418672|gb|EGG93173.1| hypothetical protein IMCC1989_1625 [gamma proteobacterium IMCC1989]
          Length = 338

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 10/180 (5%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFG 147
           +SY    Q +  D L+GL N  A   ++         Y +   ++  DID+FK INDN+G
Sbjct: 145 LSYRDAIQQALSDPLTGLANRGALEQAIAHQWQMAQRYEQHFCVLMLDIDHFKSINDNYG 204

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD V+  ++  +           R GGEEF      S+   A I+A  +R+ +    
Sbjct: 205 HGVGDNVLKAVAHSISDTTRQTDVAYRYGGEEFVVILNKSALSGALIIAERIRENVAALS 264

Query: 208 INISS--GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           I + +     + +TIS G +   +      ++ +AD+ LY AK +GRNRV  FS  E NT
Sbjct: 265 IPVDTKGKEKVKVTISIGGSCSSYCSDTQDLLRQADKVLYCAKNAGRNRVE-FSSKEGNT 323


>gi|326424362|ref|NP_763132.2| hypothetical protein VV2_1225 [Vibrio vulnificus CMCP6]
 gi|319999751|gb|AAO08122.2| hypothetical protein VV2_1225 [Vibrio vulnificus CMCP6]
          Length = 591

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 7/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           QL   D ++ L N ++  +++      E L +   +ID F++IND+FGHPVGD VI   +
Sbjct: 434 QLRHQDPMTQLENKASLANTVQRELGKEDLYLAMINIDNFQRINDSFGHPVGDMVIRKTA 493

Query: 160 DQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
             +   F  P  + + R G EEFA     S   EA    N+L+  I N+++ + +G  + 
Sbjct: 494 QMIRDAFPKPNGLCLARYGSEEFAVLFQSSDPHEAQTQLNELKHAISNTRL-LEAGLPVG 552

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +IS G+ +          I  A++AL  AK  G+NRVV F
Sbjct: 553 YSISVGLTQLA--PSYHETIENAERALQRAKNLGKNRVVIF 591


>gi|317406245|gb|EFV86489.1| hypothetical protein HMPREF0005_03723 [Achromobacter xylosoxidans
           C54]
          Length = 396

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 80/168 (47%), Gaps = 30/168 (17%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL++  A+      Y          LS++  DID+FK+IND  GH  GD V+    
Sbjct: 225 DFLTGLMSRKAWWLQAERYCAQALRTRRPLSLLLLDIDHFKRINDTHGHAAGDAVLRHFG 284

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK--IIENSQINISS----- 212
                   T   +GR+GGEEF            ++L  D+R   ++E +Q  + S     
Sbjct: 285 LLATATLRTGDHLGRVGGEEF------------SVLFADMRSDAVLEVAQRLLDSVRRTP 332

Query: 213 ----GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               G +I  T SAG+ +    E +     RAD+ LY AK++GRNRV+
Sbjct: 333 CAHGGSTIAYTFSAGVVDWLPGENLQAFFERADRMLYAAKQAGRNRVL 380


>gi|304310423|ref|YP_003810021.1| GGDEF precursor [gamma proteobacterium HdN1]
 gi|301796156|emb|CBL44362.1| GGDEF precursor [gamma proteobacterium HdN1]
          Length = 664

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 94/179 (52%), Gaps = 13/179 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKL--SIVFFDIDYFKQIND 144
           EL I+  ++ + S  D L+G+ N       L      +  EKL  S++  DID+FKQ ND
Sbjct: 472 ELEIANKQLEEQSYTDGLTGIRNRRYLDQFLAREFASARREKLPLSLLLIDIDHFKQFND 531

Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKI 202
            +GH VGD  +  +   +   V      V R GGEEF    L S++Q  A+ +A  +R+ 
Sbjct: 532 KYGHLVGDDCLRIVGTTINSTVRRETDIVARYGGEEF-CVLLPSTDQAGAVQVAETIRRR 590

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFS 259
           + + +  +++  ++ IT+S G+A R  +    I   I  ADQALY +K +GRNRV   S
Sbjct: 591 VHDIEFCVNN-QNVTITVSLGVATRTPERHHDIEHFIAAADQALYSSKHNGRNRVTIES 648


>gi|254456703|ref|ZP_05070131.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207085495|gb|EDZ62779.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 311

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 11/161 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG------SYNE-KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           ++S  D L+ + N   F   L         NE  L+I+ FDID+FK +NDN GH VGD++
Sbjct: 152 EISTKDHLTKIYNRKKFDELLSFEIKNSKINETSLAIILFDIDHFKHVNDNHGHDVGDRI 211

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  LS+ +           R GGEEF      S++  ++  A   R++IE+    + +  
Sbjct: 212 LVSLSNLIKTQIRDSDIFARWGGEEFIILMPKSNKVSSSARAEMFRQLIESHSFEVVNN- 270

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              IT S G+     ++   ++  R D+ALY AK SGRN +
Sbjct: 271 ---ITCSFGVTHYEDEDDEESLFSRVDKALYKAKDSGRNTI 308


>gi|254459429|ref|ZP_05072848.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207083839|gb|EDZ61132.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 304

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 88/176 (50%), Gaps = 7/176 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKLSIVF----FDIDYF 139
           +  I+ +L      + + S +D L+ + N  A  + L +   N+KL   F     DID F
Sbjct: 125 ANEIITQLTTQVKTLEEKSNLDSLTKVFNRRALSTYLKNVCSNDKLHYEFHMLILDIDDF 184

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND +GH  GDKV+ F+++ L         V R GGEEF        ++    + N L
Sbjct: 185 KNINDRYGHVAGDKVLIFIANILKKTLRDGDKVFRYGGEEFIIILNRIDDEHCKKITNRL 244

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             ++  +++ I  G  + +T+S G       +   +++ RAD+ALY AK SG+N++
Sbjct: 245 LDLVRGNKL-IYKGEGLRVTMSIGTTRYAEGDTPDSLVARADKALYKAKNSGKNQM 299


>gi|149377910|ref|ZP_01895638.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter algicola DG893]
 gi|149357800|gb|EDM46294.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter algicola DG893]
          Length = 565

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 86/171 (50%), Gaps = 13/171 (7%)

Query: 99  RISQLSRI---DCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGH 148
           R  QL+ +   D L+GLL HS     +   + +         +   D+D+FK++ND  GH
Sbjct: 394 RARQLNELLIRDSLTGLLKHSFIKHEVDKEHARCRRQSRSSVVAMLDLDHFKKVNDQHGH 453

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQ 207
            VGD VI  L++ L     +   +GR GGEEFA      + QE  ++LA   +   + S 
Sbjct: 454 RVGDIVIKALANLLRQRLRSTDMIGRYGGEEFAVVLPECTVQEGQSVLAQVCKTFSDLSF 513

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            N   G S+ +T+S GIA     E  S  +  ADQALY  KK+GRN V  F
Sbjct: 514 HN--DGVSLSVTLSVGIAALGSFESGSDALNAADQALYERKKAGRNGVTIF 562


>gi|73666930|ref|YP_302946.1| response regulator PleD [Ehrlichia canis str. Jake]
 gi|72394071|gb|AAZ68348.1| response regulator receiver modulated diguanylate cyclase
           [Ehrlichia canis str. Jake]
          Length = 458

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 10/161 (6%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G  N   F       I+      + LS++  DID+FK++ND FGH VGD+++    
Sbjct: 297 DPLTGCYNRRYFDMHFHNIINESLQKEKNLSLMILDIDHFKEVNDTFGHTVGDELLQQFK 356

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            ++         + R GGEEF      ++   A  +A  +  +I+++    S G  I+ T
Sbjct: 357 KRVSDNIRITDLLARFGGEEFVVILPDTTISTAEQIARRILTVIKDTPFKTSIG-DINKT 415

Query: 220 ISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +S G+ E  +   + I  +I RAD+ LY AK +GRN+VV +
Sbjct: 416 VSIGVVEVQKSDVDNIKQLIDRADKCLYEAKNTGRNKVVIY 456


>gi|78222512|ref|YP_384259.1| diguanylate cyclase with GAF sensor [Geobacter metallireducens
           GS-15]
 gi|78193767|gb|ABB31534.1| diguanylate cyclase with GAF sensor [Geobacter metallireducens
           GS-15]
          Length = 353

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 9/168 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           + R   ++  D L+GL N   F       ++    Y   LS++  D+D FK+ ND +GHP
Sbjct: 177 HERTRLMAITDALTGLYNRRYFQQMFSRELNRAKRYGNPLSLIMMDVDDFKKFNDTYGHP 236

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GDK++  + D L        F  R GGEEF      +    A  +A  LR+ +E   ++
Sbjct: 237 LGDKLLGSMGDILTEALRNTDFAFRYGGEEFIVLLPETDFSSALNVAERLRESVEQKSVD 296

Query: 210 ISSGPSIH-ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
              G +++ +T+S G+       E    ++   D+ LY AK+ G+NRV
Sbjct: 297 EMRGIALNAVTVSVGVVSYPQDGETSDDLLNGVDELLYRAKEYGKNRV 344


>gi|330981059|gb|EGH79162.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 298

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 111/232 (47%), Gaps = 19/232 (8%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG--- 87
            S+FF  FI  +   A I+L    +     L  + V +  L  + +  S LLG       
Sbjct: 45  MSVFFVKFIDYIAAAALIWLIMWQMD----LTAVGVNHAPLFYVFLISSTLLGGCLNATF 100

Query: 88  -SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVF--FDIDYFKQ 141
            S++ +   + +R  +LS  D L+   N  A ++SL +     EK S+ F   D+D+FK 
Sbjct: 101 LSLVMQTMAARDRYQELSETDTLTHAPNRRALVASLNTALACAEKSSLWFAMIDLDHFKS 160

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH VGD V+   +  L    G   F GRLGGEEF      ++  +A    + L +
Sbjct: 161 INDTHGHDVGDNVLVGFATLLKGTKGLIAF-GRLGGEEFGVILSAANAIDA---VHALEE 216

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           ++  +Q +      +  + SAG+A     E +S ++  AD+ LY AK++GR 
Sbjct: 217 LLRRAQKD--EAAQVPYSFSAGVASLSRVETVSDLLKEADENLYHAKRNGRK 266


>gi|311106383|ref|YP_003979236.1| diguanylate cyclase [Achromobacter xylosoxidans A8]
 gi|310761072|gb|ADP16521.1| diguanylate cyclase, GGDEF domain protein 13 [Achromobacter
           xylosoxidans A8]
          Length = 516

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 92/166 (55%), Gaps = 10/166 (6%)

Query: 99  RISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +++Q S  D L+GL N       + +L +     +++  DID+FK++ND +GH  GD+VI
Sbjct: 355 KLNQASITDPLTGLRNRRGTLQAVETLQAAETPFAVIALDIDHFKRVNDTYGHTAGDEVI 414

Query: 156 AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
             ++ QL+     P   + R GGEEF     G+  +EAA +A  LR+  E  ++      
Sbjct: 415 QGMA-QLMRDCSRPTDILCRSGGEEFLILLPGAGAKEAAGMAERLRRRTETHRLK----G 469

Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++ IT+SAG+A+       + T+   AD ALY AK+ GRNRVV  +
Sbjct: 470 ALEITVSAGVAQWPAGSADVDTVFQAADAALYAAKQQGRNRVVTHA 515


>gi|296273603|ref|YP_003656234.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
 gi|296097777|gb|ADG93727.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
          Length = 418

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 8/158 (5%)

Query: 106 IDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+GLL   A+ + + + ++       + +IVFFD+D+FK IND +GH  GD V+   
Sbjct: 255 IDHLTGLLTRRAYDTEIKTIDKNFERENIQYAIVFFDLDHFKDINDTYGHEGGDTVLKTF 314

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           S  L         + R GGEEF A       +E       ++ I+  +  N  +   I +
Sbjct: 315 SKILKSQTRENDILARYGGEEFVATVEYKLRREVLQYLKRIKNIVNENSFNYKNNK-IKV 373

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T SAG+  R   +     I +AD  LY AK  GRN+++
Sbjct: 374 TFSAGVVLRNDHKTYHDAIQKADILLYQAKNDGRNKII 411


>gi|262403747|ref|ZP_06080305.1| sensory box/GGDEF family protein [Vibrio sp. RC586]
 gi|262350251|gb|EEY99386.1| sensory box/GGDEF family protein [Vibrio sp. RC586]
          Length = 628

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 87/174 (50%), Gaps = 18/174 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIV-----FFDIDYFKQINDNFGH 148
           NR+ +LS  D L+ L N   F  ++           S+V       DID+FK+IND  GH
Sbjct: 459 NRLRELSEKDSLTDLWNRRKFDQTIHLECAKARRYPSLVQSCFAIVDIDHFKRINDRLGH 518

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+V+  +S  +        FV R+GGEEFA     ++ +EA I+ N +R  I  S+I
Sbjct: 519 DEGDQVLRSVSVAIQSQLRESDFVARIGGEEFAVIFPHTNIEEAEIVLNRVRTYI--SRI 576

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +        +TIS G+   C   P  T   RAD ALY +K SGRN++   +  E
Sbjct: 577 HDDG-----VTISGGVTNIC-SNPDQT-YKRADLALYESKSSGRNQISILTHAE 623


>gi|229031686|ref|ZP_04187679.1| Sensory box/GGDEF family protein [Bacillus cereus AH1271]
 gi|228729570|gb|EEL80557.1| Sensory box/GGDEF family protein [Bacillus cereus AH1271]
          Length = 430

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +L+ ID L+ + N   F   L +        +EK++++ FDID FK +ND +GH 
Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDTAMRNDEKIALILFDIDNFKTVNDTYGHD 320

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  L++ +           R GGEEF      + E+EA  +A  LR  IE     
Sbjct: 321 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTDTVEKEAFQVAESLRFFIETKHF- 379

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             SG S  +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 380 --SGIS-KLTASFGVALYEQGITREELMQRADIALYEAKKNGKNQVCVY 425


>gi|194290058|ref|YP_002005965.1| di-guanylate cyclase, ggdef domain; transmembrane protein
           [Cupriavidus taiwanensis LMG 19424]
 gi|193223893|emb|CAQ69902.1| Putative di-guanylate cyclase, GGDEF domain; transmembrane protein
           [Cupriavidus taiwanensis LMG 19424]
          Length = 420

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 12/171 (7%)

Query: 94  FISYNRISQL----SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
            ++++R+ ++    +R D L+ +L   AF   L           + +++ F D+D+FK I
Sbjct: 218 LMAHDRLRRMLERRARHDDLTDVLLRGAFWEELEGACLQAERQRKPMTVAFVDLDHFKAI 277

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD V+   +  L    G     GRLGGEEFA     ++ +   +    L   
Sbjct: 278 NDVYGHLAGDSVLRHFAGLLRKTLGQGHLAGRLGGEEFAIVMPDTALETGRLACLRLATA 337

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +  +       P I  T+S G+A R   E    ++ RAD+ALY AK  GRN
Sbjct: 338 VRATPCPSEPDP-IAYTVSIGVAARQPGEGADALMRRADRALYDAKLKGRN 387


>gi|119944877|ref|YP_942557.1| diguanylate cyclase [Psychromonas ingrahamii 37]
 gi|119863481|gb|ABM02958.1| diguanylate cyclase [Psychromonas ingrahamii 37]
          Length = 305

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 87/172 (50%), Gaps = 11/172 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
           ++  ++  LS+ID L+G+ N   F  +L           + L++   D+D+FK +ND +G
Sbjct: 130 LAEEKVLHLSQIDGLTGIANRRYFDETLENEWKRCARSKQPLTLAMIDVDHFKLLNDTYG 189

Query: 148 HPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  GD  +  + + L  +   P     R GGEEFA     +S  +A  +A+ L  +I   
Sbjct: 190 HQAGDNSLVMIGNLLKDLAQRPADLCCRYGGEEFAIIMPQTSNAQAVHIASKLITLIAAL 249

Query: 207 QINISSGPSIHI-TISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I     P+  I T+S G+A      +    ++I +AD++LY AKK GRNRV
Sbjct: 250 NIPNKKSPTKAILTVSIGLATVLPSQENDTRSLIAKADKSLYRAKKKGRNRV 301


>gi|88811276|ref|ZP_01126532.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Nitrococcus mobilis Nb-231]
 gi|88791815|gb|EAR22926.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Nitrococcus mobilis Nb-231]
          Length = 474

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 7/157 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL N     + L         Y   LSIV  D+D FK IND+ GH  GD+V
Sbjct: 293 ELASSDNLTGLYNSRKCRADLNYELERHRRYGHPLSIVVLDVDKFKHINDSLGHAEGDRV 352

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  + + L           R+GGEEF      +  ++A I+A  +R  +         G 
Sbjct: 353 LQLIGNVLQESRRKADSAYRIGGEEFLMLLPDTEPKDAWIVATRIRDRLRQKAFETLDGT 412

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
            + IT+S GIA     E       RADQA+Y AK+SG
Sbjct: 413 RLLITLSGGIAGYRGDETEREFFTRADQAMYEAKRSG 449


>gi|323493699|ref|ZP_08098819.1| GGDEF domain-containing protein [Vibrio brasiliensis LMG 20546]
 gi|323312039|gb|EGA65183.1| GGDEF domain-containing protein [Vibrio brasiliensis LMG 20546]
          Length = 606

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 90/170 (52%), Gaps = 7/170 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGH 148
           L I   ++ +LS+ D L+ + N  A + ++       ++  +I+  D+D FK IND +GH
Sbjct: 432 LRIKERQLIKLSQFDPLTNIFNRRALMDAVNIIAAKQSQSSAILMLDLDNFKSINDKYGH 491

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS-- 206
             GD V+  +++ +     +    GR+GGEEF      ++ + +  +A  +RK +E +  
Sbjct: 492 ACGDDVLINVANLIKNEIRSSDIFGRMGGEEFTVVLPDTNLETSLRIAERIRKSVELNLG 551

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            + I  GP   IT+S G++        S  + +AD+ LY AK SGRN+VV
Sbjct: 552 DVLIQYGPPAAITVSIGVS-MWQDGNFSKALAKADKHLYQAKHSGRNQVV 600


>gi|299530612|ref|ZP_07044029.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298721398|gb|EFI62338.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 400

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 114/243 (46%), Gaps = 34/243 (13%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLT--------PFYGLEYILVENLSLVIISITIS 79
           +++ SI F+ +     F   + ++ +G +        P++ L  + + N SL+   +  +
Sbjct: 154 LLWLSILFTAYT----FTRPVLIWLLGYSDLRSLPSSPYWILTLLSILNFSLLFTVVMTA 209

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132
           + +    G + KE             ID L+ +LN  +F       ++ L  Y   ++++
Sbjct: 210 IAVKETVGKLRKE-----------RDIDALTQILNRRSFQEYAQGRLADLRLY--PMAVL 256

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK+IND +GH  GDKV+  +S  L         V R GGEEF       + ++A
Sbjct: 257 ACDIDHFKRINDAWGHERGDKVLQLVSAILQSNMREHDLVARFGGEEFVILLTNIALKDA 316

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             +A  +++ I +S   + SG    +T+S G++           +  ADQ LY AK +GR
Sbjct: 317 EAIARQVQRDIGSSNDILPSG--TRMTMSFGLSSITQAFQFERALKEADQLLYQAKNAGR 374

Query: 253 NRV 255
           +RV
Sbjct: 375 DRV 377


>gi|217968133|ref|YP_002353639.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Dictyoglomus turgidum DSM 6724]
 gi|217337232|gb|ACK43025.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Dictyoglomus turgidum DSM 6724]
          Length = 1073

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 79/164 (48%), Gaps = 10/164 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +  I +L+ ID L+G+LN  A        +     YN  LS +  D+D FK  ND +GH 
Sbjct: 705 FEEIKKLATIDPLTGVLNRRALEEGFNKDVERAKRYNRPLSAIVIDVDNFKLFNDTYGHT 764

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+  L+  L         VGR GG+EFA     ++ + A  LA  L K I N  I 
Sbjct: 765 FGDQVLRELAKILKNSCRKTDLVGRYGGDEFAIILPETNLEGAIKLAERLLKSIRNLTIT 824

Query: 210 ISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSG 251
             +   I I IS GIA       EP   ++  AD A+Y AK SG
Sbjct: 825 TPTNNKIPIKISMGIASYPDDTNEP-EKLLTLADIAMYKAKTSG 867


>gi|148360473|ref|YP_001251680.1| two component response regulator [Legionella pneumophila str.
           Corby]
 gi|148282246|gb|ABQ56334.1| two component response regulator with GGDEF domain [Legionella
           pneumophila str. Corby]
          Length = 377

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 92/183 (50%), Gaps = 19/183 (10%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEK------LSIVFFDIDYFKQIN 143
           KEL I  N +  +S  D LSGL N   F +     +N        LS+V  DID FK IN
Sbjct: 194 KELLI--NELKVMSITDSLSGLYNRRYFDNIFPQEFNRARRNQYFLSLVSIDIDNFKLIN 251

Query: 144 DNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DN GHP GDKV+  ++D L  +F  +   + RLGG+EFA        +E   L   ++  
Sbjct: 252 DNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKETISLCQIIKNP 311

Query: 203 IENSQINISSGPS-----IHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNR 254
            +   +N +   +      H+T+S GIA   H E    I   I  AD+ALY AK+ G+N+
Sbjct: 312 FKTENLNHTYDSNEKLLMSHVTLSIGIA-YIHFESSVSIERAITAADKALYQAKRKGKNQ 370

Query: 255 VVC 257
           +V 
Sbjct: 371 IVV 373


>gi|327478672|gb|AEA81982.1| sensory box protein [Pseudomonas stutzeri DSM 4166]
          Length = 332

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 71/134 (52%), Gaps = 1/134 (0%)

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            ++  L+ +  DID FK+IND  GH +GD+V+  ++     V       GR+GGEEFAA 
Sbjct: 197 QFSSSLAFLLLDIDDFKRINDTHGHQMGDQVLQKVARCGAAVLRQSDLFGRIGGEEFAAV 256

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQ 242
             G     A  +A  L++ IE       +G    +T S G+      +P +S +  RAD 
Sbjct: 257 LPGCQPDLAEQIAERLQREIERVVFTAENGERFRVTASLGLTYLKASDPELSAVFARADA 316

Query: 243 ALYVAKKSGRNRVV 256
           A+Y AK+ G+N+V+
Sbjct: 317 AMYTAKRLGKNQVI 330


>gi|288942799|ref|YP_003445039.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Allochromatium vinosum DSM 180]
 gi|288898171|gb|ADC64007.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Allochromatium vinosum DSM 180]
          Length = 1030

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 89/171 (52%), Gaps = 11/171 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           R+ QL+  D L+GL N   F     I  +G    +++++F D+D FK IND  GH  GD+
Sbjct: 584 RLHQLAHYDGLTGLANRQFFRQNLSIHLMGPEPAQIAVLFLDLDRFKTINDTLGHAAGDQ 643

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LANDLRKIIENSQINIS 211
           ++  ++++L  V  +   V R GG+EF  A LG  +++A +   A+ + ++ E   +   
Sbjct: 644 LLRTVAERLRSVLRSEDLVARWGGDEFVVALLGVQDRDAVMHKAADIIARLAEPHPL--- 700

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDI 261
           +G SI +  S G A        + ++ R AD ALY AK +GR     F  +
Sbjct: 701 AGRSIRVPTSIGAALYPEGGTSADLLIRNADLALYRAKSNGRGHCQLFDPV 751


>gi|153938294|ref|YP_001389725.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium
           botulinum F str. Langeland]
 gi|152934190|gb|ABS39688.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium
           botulinum F str. Langeland]
          Length = 892

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 14/162 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFI----SSLGSY-NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +I  L+  D L+GL N    I     ++ SY NEK +++F D+D+FK IND  GH VGD 
Sbjct: 467 KILGLAYYDSLTGLSNRKKIIETINKTINSYENEKFAVLFIDLDHFKSINDTLGHDVGDY 526

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQIN 209
           V+  +S +  ++      +GRLGG+EF       ++  +E+ A  +   L   I+  + +
Sbjct: 527 VLEKVSARFKMLLSPKNKIGRLGGDEFIIVQNITSISDAEKLACKICTTLNHSIKYKEDD 586

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           +  G SI I+I     +       ST++  AD A+Y AKK+G
Sbjct: 587 LFIGASIGISIYPEDGKDT-----STLMKNADAAMYAAKKNG 623


>gi|75909441|ref|YP_323737.1| diguanylate cyclase [Anabaena variabilis ATCC 29413]
 gi|75703166|gb|ABA22842.1| Putative diguanylate cyclase (GGDEF domain) [Anabaena variabilis
           ATCC 29413]
          Length = 295

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 12/173 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           +L +L  +   + +L+R D L+GL N   F+  + S       + E L++ + D+D FKQ
Sbjct: 104 LLSQLKTTLINLEKLARTDNLTGLTNRGFFLDIVNSEIEKSLRHREPLTLAYVDVDNFKQ 163

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH  GD+++  ++            + RLGG+EFA     +S + A ++ + L  
Sbjct: 164 INDQFGHGFGDRLLQIIAKSTTNTLRKIDVIARLGGDEFAILLPRTSYESAEVVLHRLHT 223

Query: 202 IIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRN 253
           ++  S        ++ +T S G I      + ++ II  AD  +Y+AKK G+N
Sbjct: 224 VLLASM----KKENLSVTFSIGAITFNNPPKSVAEIIEIADNLMYLAKKKGKN 272


>gi|310659356|ref|YP_003937077.1| hypothetical protein CLOST_2052 [Clostridium sticklandii DSM 519]
 gi|308826134|emb|CBH22172.1| protein of unknown function [Clostridium sticklandii]
          Length = 540

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 77/135 (57%), Gaps = 3/135 (2%)

Query: 129 LSIVFF-DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           +S VF  DID FK  ND +GH  GD  ++ +S  L  +    ++ GR GGEEF       
Sbjct: 406 ISCVFLLDIDNFKLYNDYWGHLQGDVCLSMISGALTKLASFGIYAGRYGGEEFLCFTSDI 465

Query: 188 SEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGI-AERCHKEPISTIIYRADQALY 245
            +++ A+L  ++RK IEN +I  +    S ++T+S GI A   HK        +AD+ALY
Sbjct: 466 KKRDVAVLGEEIRKSIENLKIPYTREKKSSYVTVSIGISAGNIHKYNYHEHFDKADKALY 525

Query: 246 VAKKSGRNRVVCFSD 260
            AK++GRN +V ++D
Sbjct: 526 KAKEAGRNCIVLYTD 540


>gi|294340619|emb|CAZ89009.1| hypothetical protein; putative EAL, GGDEF and PAS/PAC domains
           [Thiomonas sp. 3As]
          Length = 697

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 81/166 (48%), Gaps = 12/166 (7%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           L+  D L+GLLN   F   L             ++   D+D FK++ND  GHP GD V+A
Sbjct: 137 LTERDPLTGLLNRRGFDRRLTMLERHPLGQHGFTLALIDLDDFKRVNDTLGHPAGDAVLA 196

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQINISSGP 214
            ++D+L  +        R+GG+EFA       + EQ   I    LR + +  QI   +G 
Sbjct: 197 EVADRLKALVRLTDMPARIGGDEFALLMPECRTEEQAVQIGERLLRVMAKPMQI---AGV 253

Query: 215 SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +  + S G+A +R      + +  RAD ALY AK +GRNR   FS
Sbjct: 254 ELWQSCSIGLAVQRGSGRSSTPMFQRADLALYDAKTAGRNRFKLFS 299


>gi|269960537|ref|ZP_06174909.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834614|gb|EEZ88701.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 404

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 5/155 (3%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +++  D L+GL N            EK +I   DID+FK++NDN+GH  GD  +  +++ 
Sbjct: 253 RMANQDALTGLWNRRFLFGQACGGCEKRNIAMLDIDFFKKVNDNYGHDGGDAALVMVANI 312

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L + F   + + R GGEEF   A GS +     L   +R+ +E + I       I +TIS
Sbjct: 313 LKIYFPEDV-IARFGGEEFCIQACGSYDDFVTRLEQ-MRQRVEKTPIPYQE-EDIQVTIS 369

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G++    +  +   I  AD  LY AK+SGRN+ V
Sbjct: 370 VGVSN--IQGNLDQQIKVADDRLYQAKESGRNQTV 402


>gi|266622630|ref|ZP_06115565.1| putative GGDEF domain protein [Clostridium hathewayi DSM 13479]
 gi|288865636|gb|EFC97934.1| putative GGDEF domain protein [Clostridium hathewayi DSM 13479]
          Length = 934

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 58/190 (30%), Positives = 96/190 (50%), Gaps = 15/190 (7%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFD 135
           L+G+++   ++E       + + SRID L+GLLN +A +  +      +  E+ +++  D
Sbjct: 363 LMGFVNVKNIEEKKRKELELLRQSRIDPLTGLLNRAACLQEINYLLKENGPEESALLIID 422

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-- 193
           +D FK +ND FGH  GDKV+A ++ +L  +F     VGRLGG+EF         ++A   
Sbjct: 423 VDNFKMVNDTFGHMYGDKVLAGIAYKLRDIFDEDAIVGRLGGDEFLIFMFHIPGEDAVCH 482

Query: 194 ---ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
              I+A +L+ I +  +  +    SI I  S       H      +  +AD AL  AK+S
Sbjct: 483 KAQIVARELQTIQQEGENQVVVTNSIGIAFSPR-----HGSRFQELYVKADTALRYAKQS 537

Query: 251 GRNRVVCFSD 260
           G++    F D
Sbjct: 538 GKSCYSVFGD 547



 Score = 45.4 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 10/130 (7%)

Query: 56  TPFYGLEYILVENLSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLN 114
           T F G  YI V+N ++   +I +   + Y I+  I K     Y R+   +  D LSGLLN
Sbjct: 804 TAFSG--YIGVDNPNINQDTIRLLDTIAYNIANEIKKRRL--YERLEFEAGHDTLSGLLN 859

Query: 115 HSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
            S+F+       +K      I+  DI+  KQ+N +FGH  GD+ I  ++  +   F    
Sbjct: 860 RSSFVRYQSEIEKKCGAPCGIITADINGLKQLNQDFGHSRGDETIIEVTRIMRSSFPEGD 919

Query: 171 FVGRLGGEEF 180
            + RL G+EF
Sbjct: 920 -IFRLSGDEF 928


>gi|58337684|ref|YP_194269.1| regulator components [Lactobacillus acidophilus NCFM]
 gi|58255001|gb|AAV43238.1| regulator components [Lactobacillus acidophilus NCFM]
          Length = 367

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 9/159 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GLLN+ AF   +   ++  S     I   DID+FKQ+ND +GH  G+ V++  S +
Sbjct: 207 DDLTGLLNYRAFDEEMQGLSKDESNMPIFIAVLDIDHFKQVNDTYGHLNGNTVLSTFSKK 266

Query: 162 LVVV----FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           L +     F     V R GGEEF          +   + N + K      +    G  I 
Sbjct: 267 LKLDIHHNFDPHCAVYRFGGEEFTILIKTKDNTKIIKILNSINKYYSKHPVITDEGQKIF 326

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            + S G+ E  + E  +  + RAD+ +Y AKK+GR +++
Sbjct: 327 FSFSGGLTEHHNNEKFTKTLERADELVYQAKKTGRAKIL 365


>gi|262394362|ref|YP_003286216.1| GGDEF family protein [Vibrio sp. Ex25]
 gi|262337956|gb|ACY51751.1| GGDEF family protein [Vibrio sp. Ex25]
          Length = 489

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D ++GLLN       LG +   N   SI+  DID+FK +NDN+GH VGD ++   +  + 
Sbjct: 334 DAMTGLLNRRGLDKVLGLFKQENTAFSILALDIDHFKSVNDNYGHDVGDNLLKEFAQLMK 393

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   + R GGEEF      +    A  +A  +R  +E     +       +T+S G
Sbjct: 394 EQARANDHLCRSGGEEFMMFLEATDVHHAVDVAERIRHNVEKHDFLVVG----KVTVSLG 449

Query: 224 IAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           ++  + +  PI  ++  AD ALY AK++GRNR     D +
Sbjct: 450 VSHWKGNDMPIEAVMKDADNALYKAKRNGRNRTELGEDAQ 489


>gi|261253222|ref|ZP_05945795.1| GGDEF family protein [Vibrio orientalis CIP 102891]
 gi|260936613|gb|EEX92602.1| GGDEF family protein [Vibrio orientalis CIP 102891]
          Length = 338

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 110/235 (46%), Gaps = 27/235 (11%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL-GYISGSILKE 92
           F   +I+    +  + +F++ L   Y          S+V I  +  L+L  +     LK+
Sbjct: 116 FVGHYISGEKLMLGLLVFWVSLALIY----------SIVEIRRSHQLILQAHFRQDHLKK 165

Query: 93  LFISYNR----ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
           L  S        ++L+  D L+G +N  +    L    EK       LS ++ DID+FK 
Sbjct: 166 LNRSLKEQNVHFAELANRDALTGAMNRHSIREWLDVNFEKEANTAKLLSALYLDIDHFKH 225

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH +GD ++   +  ++        + R GGEEF     G    EAA LA  +R 
Sbjct: 226 VNDQYGHGMGDDILREFTMVVLSALSPSERLVRWGGEEFVVFCPGMELSEAAELAERVRH 285

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +E + I +       +T S G+A     E  + ++ RAD+ALY+AK+ GRN+V 
Sbjct: 286 KVE-AHIWVHGDV---LTTSIGVAS-LGNERTNEMLTRADEALYLAKRKGRNQVT 335


>gi|260596375|ref|YP_003208946.1| hypothetical protein CTU_05830 [Cronobacter turicensis z3032]
 gi|260215552|emb|CBA27750.1| hypothetical protein CTU_05830 [Cronobacter turicensis z3032]
          Length = 320

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 6/174 (3%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIND 144
            ++++L      ++ LS +D L+GL N   F     +L     +L ++  DID+FK  ND
Sbjct: 140 KMVQKLIDEKATLNDLSMMDPLTGLCNRRGFQNRFDNLPPDAGQLFVLLMDIDHFKAYND 199

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           ++GH +GD+ +  +S  +     +   V R GGEEF      + E  A + A  +R+ + 
Sbjct: 200 HYGHMMGDQALTRVSAAIRDAVRSRDIVTRYGGEEFMVLLTEADEARARLAAERIRQRVY 259

Query: 205 NSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +I    +   + ++T+S GIA   + + I   + RAD+ALY AK  GRN ++
Sbjct: 260 DLRIPHMFNESVATNVTLSIGIAPLENGD-IDDALRRADEALYAAKDKGRNHIL 312


>gi|113969041|ref|YP_732834.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113883725|gb|ABI37777.1| diguanylate cyclase [Shewanella sp. MR-4]
          Length = 482

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 8/141 (5%)

Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           H A  S+ G+    + +V  DID+FK+IND  GH VGD ++  LS  L         V R
Sbjct: 343 HRAAASTQGA----ICLVMLDIDFFKEINDTLGHSVGDTILMELSSVLQHCVRESDVVAR 398

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
            GGEEF      +S +    L   +   I+++     SG  + +T S GIA+    EP+ 
Sbjct: 399 WGGEEFVILCHNTSLEAVKSLCQRIATAIKDNHF---SG-DVRLTCSFGIAKLAANEPMQ 454

Query: 235 TIIYRADQALYVAKKSGRNRV 255
           +   RAD+ALY AK  GR+++
Sbjct: 455 SCFERADKALYQAKAQGRDQI 475


>gi|149928140|ref|ZP_01916386.1| hypothetical protein LMED105_10995 [Limnobacter sp. MED105]
 gi|149823125|gb|EDM82363.1| hypothetical protein LMED105_10995 [Limnobacter sp. MED105]
          Length = 323

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 8/167 (4%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           S   + Q +  D L+  LN  A    +  + +  +   + F D+D FK +ND  GH VGD
Sbjct: 155 SSKSLRQENLTDPLTRSLNRKALEAAVWRMLNAKDPFVLSFLDLDNFKMVNDTLGHAVGD 214

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINIS 211
           K++  +S +L V       V RL G+EF   +LG+S QE A  L   +R  I  + I+ +
Sbjct: 215 KLLKRISTKLSVRLRAEDKVYRLSGDEFVVLSLGNSRQEMAENLGQRIRAAIAEA-IDYT 273

Query: 212 SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
             P + ++ S G+ +    E +S   ++ RADQ +Y AKK+G+N+V+
Sbjct: 274 C-PDLPVSASVGVLQVLAFEDVSLEKLLARADQLMYQAKKTGKNQVL 319


>gi|149203747|ref|ZP_01880716.1| diguanylate cyclase [Roseovarius sp. TM1035]
 gi|149142864|gb|EDM30906.1| diguanylate cyclase [Roseovarius sp. TM1035]
          Length = 479

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 6/137 (4%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            E  +++  D+D+FKQ+ND  GH  GD+V+  ++  L         + R+GGEEF     
Sbjct: 336 GESFAVMLADLDFFKQVNDRHGHAAGDRVLCEVTHHLRAHLREGDMLARIGGEEFLIVTP 395

Query: 186 GSSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGI--AERCHKEPISTI---IYR 239
            +S + A   A+ L  +I  + I ++SG   +H+TIS G+  A      P +++   +  
Sbjct: 396 ATSRRRAQRTADRLCAMIAQTPIPLASGLAPLHVTISIGVTMATPAPSRPAASVGQLLEE 455

Query: 240 ADQALYVAKKSGRNRVV 256
           AD+ALY AK  GRN V 
Sbjct: 456 ADRALYAAKAQGRNMVT 472


>gi|50120392|ref|YP_049559.1| putative signaling membrane protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610918|emb|CAG74363.1| putative signaling membrane protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 357

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 87/181 (48%), Gaps = 10/181 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           LGY++ +   +L      + ++S  D ++ L N   +   L         Y    ++V F
Sbjct: 175 LGYVTYTTALKLAEHKRMLMEVSIHDGMTSLYNRHHWERLLKHEYEICQRYKRIATLVLF 234

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK  NDNFGH VGD+ I  L+ +L   F     +GR GG+EFA     +S  +A  
Sbjct: 235 DIDHFKAFNDNFGHNVGDQAILLLARELTSGFRETDVIGRFGGDEFAVILPQTSAGDALD 294

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
             N +R+ +    +N +  P + + +S GIAE           +  AD ALY AK  GR 
Sbjct: 295 AVNRIRESLSLKFLNQT--PQLAVFVSVGIAEISPDMGQYIDWLKAADMALYRAKNKGRR 352

Query: 254 R 254
           R
Sbjct: 353 R 353


>gi|330966967|gb|EGH67227.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 528

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 85/170 (50%), Gaps = 11/170 (6%)

Query: 107 DCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L      +  E+  LS++  D D+FK+ ND+FGH  GD+ +  L+
Sbjct: 336 DKLTGLANRRRFDQFLDVEFKRARRERNMLSLILMDADHFKRYNDHFGHLAGDECLVALA 395

Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +      P  V  R GGEE A    G+ E  A  +A  + + I + QI   + P   +
Sbjct: 396 RLVEQCIRRPGDVAARYGGEEIAVVLPGTDEASARQVAESILQAIRDEQITHPASPFGIV 455

Query: 219 TISAGIAERC-HKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           T+S G+A        IS   +I  AD+ALY AK  GRNRV   S+I  NT
Sbjct: 456 TVSLGVATVIGSNRQISQRGLIELADRALYAAKSQGRNRVNVASEIALNT 505


>gi|283784201|ref|YP_003364066.1| signal transduction protein [Citrobacter rodentium ICC168]
 gi|282947655|emb|CBG87210.1| putative signal transduction protein [Citrobacter rodentium ICC168]
          Length = 366

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 102/206 (49%), Gaps = 25/206 (12%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           LV  L+L ++ I   LL   +S  I   L     R+  +S  D ++G+ N   +   L +
Sbjct: 167 LVGWLTLPVMVI-YPLLFARLSYQIATRLAEHKRRLQIMSSRDGMTGVYNRRHWEQLLRN 225

Query: 125 -------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                   + + +++  DID+FK IND +GH VGD+ I  L+ QL     +   +GR GG
Sbjct: 226 EFELCRRQHRECTLLIIDIDHFKDINDTWGHDVGDEAIQALTRQLRTTLRSSDVIGRFGG 285

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTI 236
           +EFA    G+   E+AI A  + ++ E    + ++  P + + IS G+A      P++  
Sbjct: 286 DEFAVIMCGTPA-ESAIAA--MSRVHEGLRALRLACAPQVILHISVGVA------PLTPQ 336

Query: 237 I--YR-----ADQALYVAKKSGRNRV 255
              YR     AD ALY AK +GRNR 
Sbjct: 337 FGHYREWLKSADLALYKAKNAGRNRT 362


>gi|167622741|ref|YP_001673035.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167352763|gb|ABZ75376.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 374

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           K+L   + R   L+ ID L+ + N   F   L          N+ LSI+  D+D+FK +N
Sbjct: 201 KKLLQQFKR---LAMIDGLTNISNRRHFDEVLTQEIKASLRNNKPLSIIMVDVDFFKPLN 257

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D+ GH VGDK +  ++  L      P   V R GGEEF  A   +    A  +A  +++ 
Sbjct: 258 DSLGHQVGDKYLKRIAGVLNSALERPRDLVARYGGEEFVIALPDTDLSGATQVAEKIKQA 317

Query: 203 IENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           I ++++ +  SG S  IT+S GIA+       + ++  AD  LY AK +GR+
Sbjct: 318 IADTELAHPGSGVSDFITVSQGIAQWHEGMEPAQLLETADSLLYQAKSAGRD 369


>gi|254241999|ref|ZP_04935321.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126195377|gb|EAZ59440.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 785

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 101/186 (54%), Gaps = 22/186 (11%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L +L  ++  + Q++R D L+GL N +AF       + +     + L+++F D+D+FK
Sbjct: 331 ALLNQLDHAHASLRQMARYDSLTGLQNRTAFNEVFVQHLENCRLRGKGLAVMFLDLDHFK 390

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL- 199
           +IND+ GH  GD+++  +S+++  V      V R  G+EF   A  + + EA IL+  L 
Sbjct: 391 RINDSLGHDSGDELLKIVSERIRSVLRDSDVVARFAGDEFCVLADLTQDHEAHILSQRLM 450

Query: 200 RKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRN 253
           +K+ E   ++   G ++ +T+S G++      E+C +     ++  A  AL+ +K  GRN
Sbjct: 451 QKMKEPIALD---GRTLVMTVSVGVSLYPNDGEQCEE-----LLKNAGLALHQSKACGRN 502

Query: 254 RVVCFS 259
               FS
Sbjct: 503 NAQFFS 508


>gi|310823687|ref|YP_003956045.1| response regulator/ggdef domain-containing protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396759|gb|ADO74218.1| Response regulator/GGDEF domain protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 348

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 90/184 (48%), Gaps = 15/184 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           KEL      +  LSR D L+ L N   F   L         Y   LS+V  DID+FK+IN
Sbjct: 166 KELARKREELLTLSRTDPLTSLSNRRYFEERLAEEFARARRYRSPLSLVMLDIDHFKRIN 225

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHP GD+V+  ++            + R GGEE  A    +S  +A      +R+ I
Sbjct: 226 DTYGHPFGDEVLRAVALVSRTRLREVDLLARYGGEELIALLPETSPADALRACERVREAI 285

Query: 204 ENSQIN--ISSGPSIHI--TISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256
           E+ +++   S G S  +  T S G+A      P+ T   ++  AD+ LY AK++GRNRV 
Sbjct: 286 ESLRLDYRASDGTSQKVSCTASLGLAS-LPSVPLQTAEDLLRAADECLYKAKEAGRNRVR 344

Query: 257 CFSD 260
            + +
Sbjct: 345 QYEE 348


>gi|300866972|ref|ZP_07111644.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
 gi|300335076|emb|CBN56810.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
          Length = 559

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 98/188 (52%), Gaps = 18/188 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDID 137
              + + L  +   + +L+ +D L+GL N   F        + SL +    +S++  D+D
Sbjct: 369 QSQLYQRLEAANGELQRLASLDGLTGLANRRQFDEYLEYEWLRSLRNGG-SISLILCDVD 427

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILA 196
           +FK  ND +GH  GD+ +  +++ +      P  F  R GGEEFA     + +Q A  +A
Sbjct: 428 FFKLYNDTYGHQAGDECLKKVAEAINEARQQPGDFAARYGGEEFAVILPCAEKQRALEVA 487

Query: 197 NDLRKIIENSQI-NISSGPSIHITISAGIAERCHK--EPISTI-----IYRADQALYVAK 248
            D+R+ I   QI + +S  S  +++S G+A    K  +P+S++     I  AD+ALY AK
Sbjct: 488 EDIRRRIAVLQIPHATSKVSEFVSVSLGVANFVGKQWQPVSSVSREGLIAMADKALYQAK 547

Query: 249 KSGRNRVV 256
           + GR+R V
Sbjct: 548 QEGRDRTV 555


>gi|239908384|ref|YP_002955126.1| putative signaling protein [Desulfovibrio magneticus RS-1]
 gi|239798251|dbj|BAH77240.1| putative signaling protein [Desulfovibrio magneticus RS-1]
          Length = 519

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 89/181 (49%), Gaps = 17/181 (9%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDN 145
           L  S  R+++ S +D L+G+ N   F  +L     +       LS+V  DID+FK  ND 
Sbjct: 339 LTASNKRLAEQSLLDGLTGIANRRRFDEALAREYRRHARGGASLSLVLIDIDHFKAFNDR 398

Query: 146 FGHPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           +GH  GD   + +A +  Q V   G    V R GGEEFA     +    AA +A  LR+ 
Sbjct: 399 YGHLHGDACLRQVAGVLRQNVTRAGD--LVARYGGEEFACILAETDAPSAAAMAERLRQA 456

Query: 203 IENSQINISSGPS-IHITISAGIAE-RC--HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +    I   + P+   +TIS G A  RC     P+  ++ RAD+ LY AK +GR++    
Sbjct: 457 VAALDIPHEASPTACRVTISCGAATVRCLPGGSPLE-LLARADEQLYRAKAAGRDQAAAE 515

Query: 259 S 259
           S
Sbjct: 516 S 516


>gi|209550345|ref|YP_002282262.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209536101|gb|ACI56036.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 782

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 14/178 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  S +R  + +  D L+GLLN   F       I++  +  ++L+ +F D+D FK IND
Sbjct: 335 ELKASEDRNHRQAITDHLTGLLNRQGFEAVLDNKIAAADAAGQELACLFVDLDRFKWIND 394

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKII 203
           N GH  GD  +  L ++L           RLGG+EFA       +E+ A ++   +  I 
Sbjct: 395 NMGHAAGDMALIELVERLKTYLAPSDEAARLGGDEFAILLPAKDAEKRARMMCEQIASIF 454

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSD 260
           E         P +H++ S GIA   H    +  ++ ++D A+Y  K+ G+N    F +
Sbjct: 455 ET-----PFAPDMHLSASVGIAIYPHHAATAAELLQKSDLAMYAKKRDGKNGAQLFDN 507


>gi|330954907|gb|EGH55167.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 392

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 32/228 (14%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F+ L    +   +L I+   + L+   I+ ++  E +       Q++  D L+GL    A
Sbjct: 166 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 215

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
               +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        R GG
Sbjct: 216 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITSGGGKAYRYGG 275

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218
           EEFA      +  E       +R+ I N +I   N  S P                S+ +
Sbjct: 276 EEFAIVFAAKTIDECMPHLEAIRETIANYEIQLRNKDSRPQDDQQGRQRRSGAQSGSVSV 335

Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           T+S G+AER   H+ P   ++  ADQALY AK +GRN VV +  +   
Sbjct: 336 TVSIGVAERQPEHRTP-EEVLKCADQALYAAKGAGRNCVVAYGQLNRR 382


>gi|330876267|gb|EGH10416.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 528

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 85/170 (50%), Gaps = 11/170 (6%)

Query: 107 DCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L      +  E+  LS++  D D+FK+ ND+FGH  GD+ +  L+
Sbjct: 336 DKLTGLANRRRFDQFLDVEFKRARRERNMLSLILMDADHFKRYNDHFGHLAGDECLVALA 395

Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +      P  V  R GGEE A    G+ E  A  +A  + + I + QI   + P   +
Sbjct: 396 RLVEQCIRRPGDVAARYGGEEIAVVLPGTDEASARQVAESILQAIRDEQITHPASPFGIV 455

Query: 219 TISAGIAERC-HKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           T+S G+A        IS   +I  AD+ALY AK  GRNRV   S+I  NT
Sbjct: 456 TVSLGVATVIGSNRQISQRGLIELADRALYAAKSQGRNRVNVASEIALNT 505


>gi|323174664|gb|EFZ60284.1| cellulose synthesis regulatory protein domain protein [Escherichia
           coli LT-68]
          Length = 178

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 9/158 (5%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N  A             ++    S++  D+D+FK IND FGH  GD+V++  +
Sbjct: 15  DTLTRLYNRGALFEKARPLAKLCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAA 74

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +          GR+GGEEF     G+S  EAA +A  +R  +   ++ I+   +I I+
Sbjct: 75  GLISSSLRAQDVAGRVGGEEFCVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRIS 134

Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+  +E         +   AD+ LY+AK++GRNRV
Sbjct: 135 ASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRV 172


>gi|255320754|ref|ZP_05361929.1| diguanylate cyclase [Acinetobacter radioresistens SK82]
 gi|262379470|ref|ZP_06072626.1| diguanylate cyclase [Acinetobacter radioresistens SH164]
 gi|255302131|gb|EET81373.1| diguanylate cyclase [Acinetobacter radioresistens SK82]
 gi|262298927|gb|EEY86840.1| diguanylate cyclase [Acinetobacter radioresistens SH164]
          Length = 524

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 77/151 (50%), Gaps = 8/151 (5%)

Query: 107 DCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL N      FI  +   +   SI+  D+DYFK+IND +GH  GD V+  ++  L 
Sbjct: 373 DPLTGLYNRRGIDIFIKEMVDNHTPFSILLIDVDYFKKINDTYGHIQGDIVLKQIAGHLR 432

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
             F       R GGEEFA       ++     A  LRK IE++  N+ SGP   +TIS G
Sbjct: 433 TNFRKDDICCRCGGEEFAVLMPTIDKKAVYNSAERLRKKIESNITNL-SGP---VTISIG 488

Query: 224 IAERCHKEPISTIIYR-ADQALYVAKKSGRN 253
           IA        +  +++ AD  LY AK+ GRN
Sbjct: 489 IAYWPESSKSTEEVFKIADHYLYQAKREGRN 519


>gi|307152361|ref|YP_003887745.1| PAS/PAC sensors-containing diguanylate cyclase [Cyanothece sp. PCC
           7822]
 gi|306982589|gb|ADN14470.1| diguanylate cyclase with PAS/PAC sensor [Cyanothece sp. PCC 7822]
          Length = 302

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 86/173 (49%), Gaps = 5/173 (2%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           SI  ELF  ++ ++ L     +   L H      L SY+    I+F D+D FKQINDN+G
Sbjct: 133 SIKGELF--FDPLTHLGNRKLIRIELEHK--FEHLYSYSIPFGILFIDLDDFKQINDNYG 188

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GDK++   +  L  +      V R GG+EF         +   I+AN +   I+ S 
Sbjct: 189 HNIGDKILIMAAKTLSNILRNMDIVARWGGDEFLVIIPNIDSKHLKIIANRISSFIKESW 248

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + I +   + IT S G      ++ I ++I RAD+ +Y +K  GRNRV    D
Sbjct: 249 L-IINDKKVGITASIGGTMAKKEDTIESLIERADREMYKSKMLGRNRVSLSED 300


>gi|152992643|ref|YP_001358364.1| hypothetical protein SUN_1050 [Sulfurovum sp. NBC37-1]
 gi|151424504|dbj|BAF72007.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 370

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 11/168 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +LS  D L+ L N   F       I    S  E L+    D+DYFKQ ND +GH  GD
Sbjct: 201 LEKLSITDTLTSLYNRRFFEEIFPRQILKAKSNKEFLTFFTLDLDYFKQYNDTYGHQKGD 260

Query: 153 KVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
             +  +++ L  VF  +  ++ R+GGEEFA   L         L N + + +   +I  S
Sbjct: 261 WALKQIAETLKEVFNKSDDYIFRMGGEEFAGIILDEDIANIHALINTVMEKLNEKEIEHS 320

Query: 212 SGPSIHI-TISAGIAERCHKEPIS-TIIYR-ADQALYVAKKSGRNRVV 256
             P  +I T S G+  +  ++ ++   IYR AD++LY AK+ GRN+VV
Sbjct: 321 GNPDTNILTCSIGVYIQAPEDGLNHQEIYRLADESLYKAKRKGRNQVV 368


>gi|157377541|ref|YP_001476141.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157319915|gb|ABV39013.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 485

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 84/161 (52%), Gaps = 8/161 (4%)

Query: 103 LSRIDCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++  D L+G+ N   F      ++   +E    +SI+  DID FK++ND +GH +GD VI
Sbjct: 323 MASTDKLTGVANRQIFEEYFAKAMAEADESETPVSIILLDIDLFKRVNDTYGHNIGDLVI 382

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +S  L         V R GGEEF           A  +A  +R  I   +I ++    
Sbjct: 383 KTVSSVLKNQLREKDVVCRWGGEEFLLLLPNLELSHAVDVAERIRGKIAKRKIRVNE-HE 441

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           I +T+S+G+AE  H E  + +I RAD ALY AK+ GR++VV
Sbjct: 442 ICVTVSSGVAEYNHTEKPNELINRADVALYQAKELGRDQVV 482


>gi|114049224|ref|YP_739774.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113890666|gb|ABI44717.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 391

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 8/165 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
           ++I  L+  D L+GL N  A    L +        NE  S++  DID+FKQIND +GH +
Sbjct: 220 SKIKILAERDQLTGLWNRHAMQKRLATIHQLWQKNNEPYSVILLDIDHFKQINDQYGHAI 279

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD  +   +     V      + R GGEEF      ++ + A  +A+ L +++  + +  
Sbjct: 280 GDLALLTAARLFSTVLREHDVLCRHGGEEFLVLLPATNARAARTVADKLHRVLRENPLQ- 338

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             G  I +  S G A          ++  AD A+Y AK  GR+R+
Sbjct: 339 CQGQEIQLYASIGYATIYRGCESDKLLIEADHAMYQAKSEGRDRI 383


>gi|310779466|ref|YP_003967799.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
 gi|309748789|gb|ADO83451.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
          Length = 646

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 17/169 (10%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  LS  D L+GL N   F     +         E+L I+  D D FKQ+NDNFGH  GD
Sbjct: 478 LKTLSVTDHLTGLYNRRYFYEKFHADWRKARDNKERLYIILVDFDNFKQVNDNFGHHSGD 537

Query: 153 KVIAFLSDQLVVVFGTPM---FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           + +   S     +F + +   +VGR GG+EF        E++   +  ++RK IE  +I 
Sbjct: 538 RALIEASK----IFSSELKEGYVGRYGGDEFVGGVRSKDEKKVIGIGENIRKKIEQLKIP 593

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRVV 256
           I+      +T+S GI     +  +    Y  + D+ALY AK++GRN + 
Sbjct: 594 INKNGE-QLTVSVGIFGVVPEGDLDLRRYFVKVDKALYTAKRNGRNMIT 641


>gi|262375960|ref|ZP_06069191.1| WspR [Acinetobacter lwoffii SH145]
 gi|262309054|gb|EEY90186.1| WspR [Acinetobacter lwoffii SH145]
          Length = 423

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 90/171 (52%), Gaps = 10/171 (5%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFG 147
           I  N +  LS+ D L+ + N   F  +L  + E+       L+I+F D+D+FK  ND +G
Sbjct: 238 IHTNELLHLSQYDELTKISNRRTFDETLQVHFERAHREETALAILFIDVDFFKNYNDFYG 297

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD VI+ ++  +        FV R GGEEF      +    A  +A+++ K I+  +
Sbjct: 298 HQKGDDVISTIAKTIKNAIRHMDFVARYGGEEFVVLLPETDAHGAYAVASNIFKAIDRLE 357

Query: 208 I-NISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRV 255
           I +  S  + HITIS GI     ++ I    ++  ADQALY AK+ GRN++
Sbjct: 358 IPHEKSLVAKHITISLGITVYRGEDDIDKDALLGIADQALYRAKQLGRNQI 408


>gi|192361108|ref|YP_001982137.1| hypothetical protein CJA_1657 [Cellvibrio japonicus Ueda107]
 gi|190687273|gb|ACE84951.1| conserved domain protein [Cellvibrio japonicus Ueda107]
          Length = 239

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 9/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
            +L EL      +    R D L+GL N+  F  +L    E+       LS+V  D+DYFK
Sbjct: 25  QLLGELQQQVRDLQAQVRTDALTGLYNYRFFSDTLLLEMERTRRSFQPLSLVLLDLDYFK 84

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
             ND +GH  G++ +  L+  +        F  R GGEEFA     +  + A  +A  +R
Sbjct: 85  AFNDRWGHDAGNQALVHLAGVVNQGLRKLDFACRYGGEEFALILPNTDLRHAVSVAERVR 144

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
           +++ +S + + +G +  +T S G+ E   +  E       R D  LY AK +GRNRV C
Sbjct: 145 ELLVSSPLIMPTGETCALTASFGVDEFAGQLNESPEEFTRRVDYWLYQAKLTGRNRVAC 203


>gi|168184847|ref|ZP_02619511.1| putative diguanylate cyclase [Clostridium botulinum Bf]
 gi|237793677|ref|YP_002861229.1| putative diguanylate cyclase [Clostridium botulinum Ba4 str. 657]
 gi|182672126|gb|EDT84087.1| putative diguanylate cyclase [Clostridium botulinum Bf]
 gi|229261773|gb|ACQ52806.1| putative diguanylate cyclase [Clostridium botulinum Ba4 str. 657]
          Length = 892

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 14/170 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +I  L+  D L+GL N    I ++        NEK +++F D+D+FK IND  GH VGD 
Sbjct: 467 KILGLAYYDSLTGLSNRKKIIETINKTISNYANEKFAVLFIDLDHFKSINDTLGHDVGDY 526

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQIN 209
           V+  +S +  ++      +GRLGG+EF       ++  +E+ A  +   L   I+  + +
Sbjct: 527 VLEKVSARFKMLLSPKHKIGRLGGDEFIIVQNITSISDAEKLACKICTTLNHSIKYKEDD 586

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  G SI I+I     +       ST++  AD A+Y AKK+G  +   +S
Sbjct: 587 LFIGASIGISIYPEDGKDT-----STLMKNADAAMYAAKKNGGYKYEVYS 631


>gi|157964306|ref|YP_001499130.1| response regulator PleD [Rickettsia massiliae MTU5]
 gi|157844082|gb|ABV84583.1| Regulatory components of sensory transduction system [Rickettsia
           massiliae MTU5]
          Length = 456

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 78/162 (48%), Gaps = 8/162 (4%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N   F       I      + KL ++  DID FK +ND +GH  GDKV+
Sbjct: 293 LAAKDGLTGLFNRRYFDIHLKQMIEKANKESIKLYLLMCDIDNFKHVNDTYGHQAGDKVL 352

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-P 214
             +S  L         + R GGEEF          +A   A  +R  IE    +I     
Sbjct: 353 TIVSRILKNTLRVTDLIARFGGEEFTILLTDIDISKAIETAERVRVKIEYMDFHIEDQIE 412

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  TIS G+ +   +E I + I RAD+A+Y AK +G+N+VV
Sbjct: 413 PLKNTISIGVTKYKKEESIESFIERADKAMYEAKTTGKNKVV 454


>gi|78355124|ref|YP_386573.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217529|gb|ABB36878.1| diguanylate cyclase (GGDEF domain) [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 411

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 12/160 (7%)

Query: 106 IDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           +D L+ + +  A ++          +   D+D+FK  ND +GH VGD V+  ++ +L  V
Sbjct: 251 VDELTEVPSRRALMADAKKLGGSYCVAMADVDHFKAFNDTYGHDVGDDVLRMVAARLAGV 310

Query: 166 FGTPMFVGRLGGEEFAA--AALGSSEQEA-------AILANDLRKIIENSQINISSGPSI 216
            G  ++  R GGEEF      LG +E          A+ A   R    N    +    S+
Sbjct: 311 DGGKVY--RYGGEEFTILFPRLGRAEARPHLEAVREAVAAIPFRIRTRNKSAKVVRDKSV 368

Query: 217 HITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
            +T+S G+A+R   E    +++ +AD+ALY AKK+GRN+V
Sbjct: 369 TVTVSIGLAQREDGEDDFESVLKKADKALYKAKKAGRNKV 408


>gi|33592539|ref|NP_880183.1| hypothetical protein BP1441 [Bordetella pertussis Tohama I]
 gi|33572185|emb|CAE41731.1| probable membrane protein [Bordetella pertussis Tohama I]
 gi|332381957|gb|AEE66804.1| hypothetical protein BPTD_1425 [Bordetella pertussis CS]
          Length = 385

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 109/246 (44%), Gaps = 35/246 (14%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL--------------SLVIISI 76
           +S +F+   ATV  + +        T  YGL+    + L               LV+ S+
Sbjct: 149 YSYWFAGVTATVAALGHALR-----TAVYGLQIEQTQGLLQSSVWNVAFLAIGVLVMPSM 203

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129
           T+ +++  I   +L E     N+       D L+GLL+  A+        +        L
Sbjct: 204 TLGMIM-MIHDRMLAEREREANQ-------DFLTGLLSRKAWWREGERLCARALRTGRPL 255

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID FKQ+ND  GH  GD V+         +  +   +GRLGGEEF A    +  
Sbjct: 256 TLLALDIDRFKQVNDQHGHAAGDVVLRHFGSLATALLRSGDVIGRLGGEEFVALLPDTDG 315

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
                +A  L   +  +  +   G ++  T S G+A+    + +  ++ RAD ALY AK+
Sbjct: 316 DTGVSVAERLLASVRATPCS-HGGKALTYTFSGGVAQYRAGDTLPVLVERADAALYAAKQ 374

Query: 250 SGRNRV 255
           +GR+R+
Sbjct: 375 AGRDRI 380


>gi|13472065|ref|NP_103632.1| hypothetical protein mll2240 [Mesorhizobium loti MAFF303099]
 gi|14022810|dbj|BAB49418.1| mll2240 [Mesorhizobium loti MAFF303099]
          Length = 357

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 8/169 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDN 145
           I +E  +S +R+  L+  D ++GL N + F + L   +      +++  D+D FK +ND 
Sbjct: 175 ITEEKILS-DRMRYLAEFDPMTGLANRARFQARLAQPDASRPLGALLLIDLDGFKAVNDT 233

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH VGD+ +   +++L    G    V R+GG+EF A  LGS    AA+ +   R+IIE 
Sbjct: 234 FGHVVGDECLKAAAERLAEGCGEADLVARVGGDEF-AVLLGSHLDRAAV-SGVAREIIEG 291

Query: 206 -SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             +  +  G S+ +  S GIA      P   +  +AD ALY AK +GRN
Sbjct: 292 MGKPVVVRGQSLRLGASVGIAFAGQGAPCD-LFAQADTALYAAKAAGRN 339


>gi|84393675|ref|ZP_00992425.1| putative sensory box/GGDEF family protein [Vibrio splendidus 12B01]
 gi|84375674|gb|EAP92571.1| putative sensory box/GGDEF family protein [Vibrio splendidus 12B01]
          Length = 596

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/183 (38%), Positives = 90/183 (49%), Gaps = 24/183 (13%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLS-IVFFDIDY 138
           S+ KEL +   R+  LS  D LS L N   F   L  Y        NE  + +   DID 
Sbjct: 422 SVRKELEV---RLRILSERDSLSNLWNRRKFEEQLAYYSRLVERYPNEATTCLALVDIDN 478

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND  GH  GD+VIA ++  L        FV R+GGEEFA     +S  EA  + + 
Sbjct: 479 FKRINDELGHDEGDRVIASVARLLQDSLRNTDFVARVGGEEFALLMPHTSLPEAKRVLDR 538

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-V 256
           LR  IE     +SSG    +T+S G  +       ST  Y+ AD  LY +K SGRN V +
Sbjct: 539 LRIEIE-----LSSG--TKVTVSVGFTDLTSN---STRSYKCADVGLYESKSSGRNTVSM 588

Query: 257 CFS 259
           C S
Sbjct: 589 CPS 591


>gi|68171699|ref|ZP_00545057.1| GGDEF [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657972|ref|YP_507571.1| response regulator PleD [Ehrlichia chaffeensis str. Arkansas]
 gi|67998880|gb|EAM85574.1| GGDEF [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599429|gb|ABD44898.1| putative response regulator/diguanylate cyclase [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 458

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 10/161 (6%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G  N   F       ++     ++ LS++  DID+FK++ND FGH VGD+++    
Sbjct: 297 DPLTGCYNRRYFDMHFHNIVNESLQKDKNLSLMILDIDHFKEVNDTFGHTVGDELLQQFK 356

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            ++         + R GGEEF      ++   A  +A  +  +IE +    S G  I+ T
Sbjct: 357 KRVSDNIRITDLLARFGGEEFVVILPDTTITTAEQIATRILSVIEETPFKTSIG-DINKT 415

Query: 220 ISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCF 258
           +S G+ E    +   I  ++ RAD+ LY AK +GRN+VV +
Sbjct: 416 VSIGVVEVQQSDINNIKQLVDRADKCLYEAKNTGRNKVVTY 456


>gi|229529554|ref|ZP_04418944.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229333328|gb|EEN98814.1| GGDEF family protein [Vibrio cholerae 12129(1)]
          Length = 443

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 15/166 (9%)

Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+G+LN  AF   L          N KL+++FFD+D FK+IND  GH VGD V+
Sbjct: 269 LSERDSLTGILNRRAFKQQLSHALIKAKRSNMKLALLFFDLDKFKEINDTKGHEVGDLVL 328

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGP 214
             ++ +L        F GRLGG+EF         Q+ + + N   +++E  Q  +  +  
Sbjct: 329 QEIAQRLKGSIRESDFCGRLGGDEFLVCL--DLLQDHSGVINKAYQMLEKLQKPLQLNQE 386

Query: 215 SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S+ I +S G+A   E+  + P   ++  AD+A+Y AK    N V C
Sbjct: 387 SLEIGVSIGVALYPEQATQVP--ELLRIADEAMYTAKHQSGNTVYC 430


>gi|146280455|ref|YP_001170608.1| sensory box protein [Pseudomonas stutzeri A1501]
 gi|145568660|gb|ABP77766.1| sensory box/GGDEF domain protein [Pseudomonas stutzeri A1501]
          Length = 269

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 68/129 (52%), Gaps = 1/129 (0%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+ +  DID FK+IND  GH +GD+V+  ++     V       GR+GGEEFAA   G  
Sbjct: 139 LAFLLLDIDDFKRINDTHGHQMGDQVLQKVARCGAAVLRQSDLFGRIGGEEFAAVLPGCQ 198

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247
              A  +A  L++ IE       +G    +T S G+   R     +S +  RAD A+Y A
Sbjct: 199 PDLAEQIAERLQREIERVVFTAENGERFRVTASLGLTYLRASDAELSAVFARADAAMYTA 258

Query: 248 KKSGRNRVV 256
           K+ G+N+V+
Sbjct: 259 KRLGKNQVI 267


>gi|187477525|ref|YP_785549.1| signaling/response regulator protein [Bordetella avium 197N]
 gi|115422111|emb|CAJ48635.1| putative signaling/response regulator protein [Bordetella avium
           197N]
          Length = 336

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 11/177 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEK--LSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+GL N       L +     Y E+  +S++  D+D+FK  N
Sbjct: 156 QKLLETNMELRRLTNSDGLTGLGNRRYLDEYLAAEWARAYREQHEISLLMIDVDHFKLFN 215

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+ +  ++  ++           R GGEEFA    G +   A + A  LR+ 
Sbjct: 216 DLYGHIAGDEALKRVATAILACCDRSTDLAARFGGEEFAMVLPGKAAGSARLTAEKLRRS 275

Query: 203 IENSQI-NISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVV 256
           +E  Q+ +  SG    +T+S G++    +  +P + +I +AD+ LY AK+ GRNRVV
Sbjct: 276 VEAMQLPHEGSGAGSWLTVSIGVSTVTPRNGQPFTDLIEQADRGLYEAKRQGRNRVV 332


>gi|71280809|ref|YP_268663.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71146549|gb|AAZ27022.1| sensory box/GGDEF/EAL domain protein [Colwellia psychrerythraea
           34H]
          Length = 692

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 91/188 (48%), Gaps = 21/188 (11%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQI 142
           + E + S   I   +  D L+ L N        S  ++     NEK++++F D+D FK+I
Sbjct: 252 ISEQYKSAEIIRHQAYFDTLTSLPNRFLALDRLSQMLTEAERNNEKIAVLFLDLDDFKKI 311

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA--ILANDLR 200
           ND+ GH +GDKV+   + +L  V      VGRLGG+EF     G +E   A  I  N L+
Sbjct: 312 NDSLGHEIGDKVLIQSAHRLKQVLREGDTVGRLGGDEFIVLLRGVTENHDALVITENLLK 371

Query: 201 KIIENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              E   I+   G  + +T+S G+A      RC     S ++  AD A+Y AK  GRN  
Sbjct: 372 SFREPFVID---GRELMLTLSIGVAISPENGRC----ASDLLRNADTAMYKAKDLGRNTY 424

Query: 256 VCFSDIEN 263
             FS   N
Sbjct: 425 SFFSKKMN 432


>gi|304310950|ref|YP_003810548.1| probable diguanylate cyclase (GGDEF domain) [gamma proteobacterium
           HdN1]
 gi|301796683|emb|CBL44895.1| probable diguanylate cyclase (GGDEF domain) [gamma proteobacterium
           HdN1]
          Length = 420

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 17/190 (8%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSI 131
            L LG+   ++L+++     ++  L+  D L+GL N    + ++           EK+ +
Sbjct: 233 DLYLGF--NAMLEKIRERDEQLRLLATTDALTGLANRRHAMETMEVMVERSRRTGEKIGV 290

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  D+D+FK+IND FGH VGD V+  L   L           R GGEEF      +  + 
Sbjct: 291 ILLDVDHFKKINDTFGHHVGDAVLIGLGKTLQSCARRYDLAVRWGGEEFLLLCDNADLET 350

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-----TIIYRADQALYV 246
            A +A  +R+ +            + +T+S G+   C + PI+      ++ +AD+ALY 
Sbjct: 351 TAGIAERVRQSVAVQSFETGDRMCLGVTVSLGV---CSEVPIAQAAVDKMLEKADRALYR 407

Query: 247 AKKSGRNRVV 256
           AK+SGRN+V 
Sbjct: 408 AKESGRNQVA 417


>gi|283851320|ref|ZP_06368602.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
 gi|283573270|gb|EFC21248.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
          Length = 356

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 29/182 (15%)

Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +S  D L+G+ N  AF + +G       +    LS+   DID+FK+ ND  GH +GD+ +
Sbjct: 172 MSLTDGLTGIHNRRAFDAHIGRAVARAVAERRPLSLFMCDIDHFKRFNDEHGHRIGDQAL 231

Query: 156 AFL-------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE---- 204
             +       ++++  +    +F  R GGEEF  A     + EA  LA  +R+ IE    
Sbjct: 232 VVVGSILKGFAEEMKQLEDRDIFPARYGGEEFTVALADIEKDEAEELAEIIRRKIERYNF 291

Query: 205 -----NSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                + QI ++SG  I I +S G+AE    C    I  ++  AD+ LY+AK SGRN+V 
Sbjct: 292 VIRDPDGQI-LASG--IKINVSIGVAELLTDCPVADIDHLVDAADKGLYLAKSSGRNQVR 348

Query: 257 CF 258
            +
Sbjct: 349 AY 350


>gi|258621533|ref|ZP_05716566.1| GGDEF family protein [Vibrio mimicus VM573]
 gi|258627548|ref|ZP_05722325.1| GGDEF family protein [Vibrio mimicus VM603]
 gi|258580130|gb|EEW05102.1| GGDEF family protein [Vibrio mimicus VM603]
 gi|258586151|gb|EEW10867.1| GGDEF family protein [Vibrio mimicus VM573]
          Length = 443

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 85/168 (50%), Gaps = 19/168 (11%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+GLLN  AF   L          N KL+++FFD+D FK+IND  GH VGD V+
Sbjct: 269 LSERDSLTGLLNRRAFKQQLSQALVKAKRSNLKLALLFFDLDKFKEINDTKGHEVGDIVL 328

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAA------ALGSSEQEAAILANDLRKIIENSQIN 209
             ++ +L        F GRLGG+EF           G  ++   IL   L+ I  N + +
Sbjct: 329 REVAQRLKATIRESDFCGRLGGDEFVVCLDILQDHSGVRDKSYQILDKLLKPIRANDE-D 387

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G SI I +     E+  + P   ++  AD+A+YVAK    + + C
Sbjct: 388 LSVGVSIGIAL---YPEQSTQMP--GLLRIADEAMYVAKHQSGSMIYC 430


>gi|254503919|ref|ZP_05116070.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
 gi|222439990|gb|EEE46669.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
          Length = 409

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 125/262 (47%), Gaps = 16/262 (6%)

Query: 11  IWLCHEKNLESFS--PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           I + H+ N E     P     Y   +     A+   +  I L Y+  + F        + 
Sbjct: 137 IEVHHDDNDERTDGDPRVPETYIEAYVPAITASGEKVGTIEL-YVDASAFEEALEETFQE 195

Query: 69  LSLVIISITISLLLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-- 124
           +S+ +++ T+ +LL  I+  + +  +L  +  R+ +L+R D L+G+ N ++    L +  
Sbjct: 196 VSIYLVAGTVLVLLFPIAAFVRRTQQLMQNDKRMLELTRYDQLTGVFNRNSTTQHLKALF 255

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEE 179
                     I+F D+DYFKQ+ND +GH  GD ++  ++D L          VGR GG+E
Sbjct: 256 IDPDRAAGTGILFVDVDYFKQVNDKYGHACGDILLKHIADVLKSSIRLKDDVVGRYGGDE 315

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEPISTIIY 238
           F       ++ +   L+   ++++E ++   +  G S   ++S G       +     ++
Sbjct: 316 FVILCRNITKADFRGLS---QRVMEGAKTPCTHEGNSYTPSLSVGAYLSRDGDTEDLALH 372

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
           RAD A+Y AK+ GRN+VV FS+
Sbjct: 373 RADLAVYAAKRGGRNQVVEFSE 394


>gi|182701591|ref|ZP_02612364.2| putative diguanylate cyclase [Clostridium botulinum NCTC 2916]
 gi|182670760|gb|EDT82734.1| putative diguanylate cyclase [Clostridium botulinum NCTC 2916]
          Length = 843

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 14/162 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFI----SSLGSY-NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +I  L+  D L+GL N    I     ++ SY NEK +++F D+D+FK IND  GH VGD 
Sbjct: 418 KILGLAYYDSLTGLSNRKKIIETINKTINSYENEKFAVLFIDLDHFKSINDTLGHDVGDY 477

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQIN 209
           V+  +S +  ++      +GRLGG+EF       ++  +E+ A  +   L   I+  + +
Sbjct: 478 VLEKVSARFKMLLSPKHKIGRLGGDEFIIVQNITSISDAEKLACKICTTLNHSIKYKEDD 537

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           +  G SI I+I     +       ST++  AD A+Y AKK+G
Sbjct: 538 LFIGASIGISIYPEDGKDT-----STLMKNADAAMYAAKKNG 574


>gi|187926060|ref|YP_001892405.1| diguanylate cyclase [Ralstonia pickettii 12J]
 gi|241665547|ref|YP_002983906.1| diguanylate cyclase [Ralstonia pickettii 12D]
 gi|187727814|gb|ACD28978.1| diguanylate cyclase [Ralstonia pickettii 12J]
 gi|240867574|gb|ACS65234.1| diguanylate cyclase [Ralstonia pickettii 12D]
          Length = 448

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 84/173 (48%), Gaps = 10/173 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +L  + +  S  +R D L+G LN      +L          N  L I F DID FK IND
Sbjct: 276 QLRKALDMASASARHDLLTGALNRKGLEEALEREVARAARQNTALCIAFLDIDDFKAIND 335

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD  ++ L+            + R GGEEF      +S +E       L++ + 
Sbjct: 336 THGHSFGDDALSHLAQVARESMRPQDTLARFGGEEFVILMPDTSLEEGVQTIVRLQRAL- 394

Query: 205 NSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +Q   ++G + + IT SAG+AE    EP    I RAD+ +Y AK++G+N+VV
Sbjct: 395 -TQRFFAAGDTRLFITFSAGVAEVGKNEPPMAAIQRADRGMYQAKRAGKNKVV 446


>gi|307300411|ref|ZP_07580191.1| diguanylate cyclase [Sinorhizobium meliloti BL225C]
 gi|307318276|ref|ZP_07597711.1| diguanylate cyclase [Sinorhizobium meliloti AK83]
 gi|306895958|gb|EFN26709.1| diguanylate cyclase [Sinorhizobium meliloti AK83]
 gi|306904577|gb|EFN35161.1| diguanylate cyclase [Sinorhizobium meliloti BL225C]
          Length = 316

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 9/162 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHPVGDK 153
           + S++D L+ + N    +  L  +    +        +   DIDYFK IND +GH  GD+
Sbjct: 138 RASQVDELTSVPNRRYTMERLNEFIRNCAENPHMWGCVAIIDIDYFKAINDRYGHHRGDE 197

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+   + Q+          GR+GGEEF      ++  EA ++ + L   I N++  +S+ 
Sbjct: 198 VLLDFARQMQEFVRRSDCFGRIGGEEFMLILPDTTVGEANLILDRLLDKIRNARP-LSNI 256

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           P    T S G+AE    + +  I  RAD+ALY+AK+ GR+RV
Sbjct: 257 PEFFYTCSVGLAEYREGDSVGDIYSRADEALYIAKREGRDRV 298


>gi|167033233|ref|YP_001668464.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida GB-1]
 gi|166859721|gb|ABY98128.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida GB-1]
          Length = 698

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 91/186 (48%), Gaps = 24/186 (12%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVF-FDIDYFKQIND 144
           E   ++ +I  ++  D L+GL N + F   L      GS N KL+     D+D FK IND
Sbjct: 264 EELAAHAQIHHMAHHDALTGLPNRTLFNERLRQALVRGSENAKLTAALCLDLDNFKNIND 323

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH  GDK++  L  +L         + RLGG+EFA    G   ++AA   N   ++  
Sbjct: 324 SLGHAFGDKLLRELGKRLRRELREHDTLARLGGDEFAVVLTGLEGRDAAC--NTAHRL-- 379

Query: 205 NSQINISSGP--------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              IN  S P        S+ ++I   IA   + +    + Y AD ALY AK++GRNR  
Sbjct: 380 ---INAISPPFQIEGHQFSVGVSIGIAIAPDDNDQAEQLLGY-ADMALYEAKRNGRNRYE 435

Query: 257 CFSDIE 262
           CF D+E
Sbjct: 436 CF-DVE 440


>gi|323488321|ref|ZP_08093569.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis
           MPA1U2]
 gi|323397979|gb|EGA90777.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis
           MPA1U2]
          Length = 758

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 19/176 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +L+  D LSGL N   F+  L         ++EK+++VF D+D FK +ND+FGH  
Sbjct: 319 RKMEELAYYDVLSGLPNRRLFLEKLEDSIRDAKQHSEKVAVVFIDLDRFKNVNDSFGHEF 378

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD ++   S+++     +   + R GG+EF        ++      +D+  +I+  Q  +
Sbjct: 379 GDLLLQGFSEKIKENLRSDDVISRQGGDEFTIILNNIYDE------HDISPLIQRLQTAL 432

Query: 211 S-----SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +     +G  +HI++S GIA      E    ++  AD A+Y AK  G+N    FSD
Sbjct: 433 AKPMMINGQELHISMSIGIAVYPKDGETTGELLKHADSAMYSAKAKGKNNFQFFSD 488


>gi|153212739|ref|ZP_01948396.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|124116389|gb|EAY35209.1| GGDEF family protein [Vibrio cholerae 1587]
          Length = 443

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 15/166 (9%)

Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+G+LN  AF   L          N KL+++FFD+D FK+IND  GH VGD V+
Sbjct: 269 LSERDSLTGILNRRAFKQQLSHALIKAKRSNMKLALLFFDLDKFKEINDTKGHEVGDLVL 328

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGP 214
             ++ +L        F GRLGG+EF         Q+ + + N   +++E  Q  +  +  
Sbjct: 329 QEIAQRLKGSIRESDFCGRLGGDEFVVCL--DLLQDHSGVINKAYQMLEKLQKPLQLNQE 386

Query: 215 SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S+ I +S G+A   E+  + P   ++  AD+A+Y AK    N V C
Sbjct: 387 SLEIGVSIGVALYPEQATQIP--ELLRIADEAMYTAKHQSGNTVYC 430


>gi|91201909|emb|CAJ74969.1| hypothetical protein kuste4207 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 511

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 114/238 (47%), Gaps = 24/238 (10%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVE-NLSLVIISITISLLLGYISGSIL------KELF 94
           V+  AN F FYI       +E IL+E N  L  I++T   +   +  + +      +EL 
Sbjct: 276 VVHNANYFGFYIKKPK--SIEEILIEANTILSGINLTYDQMNKELVNAKIQMQKAARELE 333

Query: 95  ISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVF----FDIDYFKQINDNFG 147
           I    +  L+ ID L+ + NH     F+    +  ++   VF     D+D FK+ NDN+G
Sbjct: 334 IKNKWLESLANIDGLTEVYNHRYLQIFLERELNRTKRKKGVFCLIMLDVDNFKKFNDNYG 393

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD ++  L D L     T   + R GGEEFA     S  + A I+A  LR+ +    
Sbjct: 394 HQAGDFILKELCDLLKKGIRTYDILARYGGEEFAIVLPESDLEGALIVAERLRQRVA-EH 452

Query: 208 INISSGPSIHITISAGIAERCHKEPI-----STIIYRADQALYVAKKSGRNRVVCFSD 260
           +   +     +TIS G+AE   K  I     S +I RAD+AL  +KK+G+NR+    D
Sbjct: 453 VFADNKEQYKVTISIGVAET--KPSIDNLNRSGLIGRADKALLESKKNGKNRITACLD 508


>gi|262192381|ref|ZP_06050534.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
 gi|262031734|gb|EEY50319.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
          Length = 443

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 15/166 (9%)

Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+G+LN  AF   L          N KL+++FFD+D FK+IND  GH VGD V+
Sbjct: 269 LSERDSLTGILNRRAFKQQLSHALIKAKRSNMKLALLFFDLDKFKEINDTKGHEVGDLVL 328

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGP 214
             ++ +L        F GRLGG+EF         Q+ + + N   +++E  Q  +  +  
Sbjct: 329 QEIAQRLKGSIRESDFCGRLGGDEFVVCL--DLLQDHSGVINKAYQMLEKLQKPLQLNQE 386

Query: 215 SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S+ I +S G+A   E+  + P   ++  AD+A+Y AK    N V C
Sbjct: 387 SLEIGMSIGVALYPEQATQVP--ELLRIADEAMYTAKHQSGNTVYC 430


>gi|188588974|ref|YP_001920748.1| ggdef/hd domain protein [Clostridium botulinum E3 str. Alaska E43]
 gi|188499255|gb|ACD52391.1| ggdef/hd domain protein [Clostridium botulinum E3 str. Alaska E43]
          Length = 569

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 9/171 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  +  ID L+ L NH  F  SL         YN+ ++++F DIDYFKQ ND  GH  GD
Sbjct: 190 LEDMINIDGLTELYNHRYFCDSLVENVKSGEKYNKPVAMIFIDIDYFKQYNDINGHQKGD 249

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-IS 211
            V+  +   +           R GGEEF+     ++E++A  +A +LRK IE +      
Sbjct: 250 YVLKKIGKIIKENSRKEDIPARYGGEEFSIILPETNEEKALNIAENLRKSIETTYFEGEE 309

Query: 212 SGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDI 261
           + P+  +T+S G++   +K      +I  AD ALY AK   +NRV  ++ I
Sbjct: 310 NQPNGKVTVSIGVSVYPYKAKNDVELIKSADDALYRAKFFYKNRVEVYTSI 360


>gi|157376555|ref|YP_001475155.1| GGDEF domain-containing protein [Shewanella sediminis HAW-EB3]
 gi|157318929|gb|ABV38027.1| GGDEF domain-like protein [Shewanella sediminis HAW-EB3]
          Length = 325

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 85/172 (49%), Gaps = 26/172 (15%)

Query: 107 DCLSGLLNHSAFISSL-----------GSYNEKLS--IVFFDIDYFKQINDNFGHPVGDK 153
           D L+GLLN  AF S L           G  +++LS  +  FDID FK IND FGH  GD+
Sbjct: 145 DVLTGLLNRKAFESRLKLASETSYQNSGLDDQRLSYWLCIFDIDKFKLINDTFGHLYGDE 204

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ----EAAILANDLRKIIENSQIN 209
           ++  L   +  VF     + R GG+EF       ++Q    +     N+L +        
Sbjct: 205 ILLDLVTVMRNVFSESDGMFRFGGDEFVLLIAPDTKQRVRAKCERFCNELYEF------- 257

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                +I +T+S G+ E    E  S ++ +ADQALY  K++GRNR+  F ++
Sbjct: 258 --HDQNIQVTLSMGMTEVLPGEQASGLLEKADQALYYVKENGRNRIEIFEEL 307


>gi|167031258|ref|YP_001666489.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas putida
           GB-1]
 gi|166857746|gb|ABY96153.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida GB-1]
          Length = 342

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 78/130 (60%), Gaps = 4/130 (3%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+ +  DID FK+IND++GH  GD+V+  ++D    V       GR+GGEEFAA   G +
Sbjct: 213 LAFLLLDIDDFKRINDSYGHQEGDQVLQHIADSGKAVLRRGDLFGRIGGEEFAAVFPGCN 272

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKE-PISTIIYRADQALYV 246
            + A  +A  L++ I+  +++ S G   + +T+S G+     ++  + ++  RAD A+Y 
Sbjct: 273 AEVAEQIAERLQRQIQ--RLSFSHGQQTYGVTVSQGLTGLTEEDVTLDSLYARADAAMYQ 330

Query: 247 AKKSGRNRVV 256
           AK+ G+N++V
Sbjct: 331 AKRQGKNQIV 340


>gi|152995260|ref|YP_001340095.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150836184|gb|ABR70160.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 345

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 11/155 (7%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N           + S  + +  LS++  DIDYFK+IND +GH +GD  +  ++
Sbjct: 188 DPLTGLFNRRGLNLHFTKELDSADTTSSPLSLILIDIDYFKKINDMYGHDIGDVCLIEIA 247

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L         + R GGEEF      + + E   +A  L+ +I N +    S  ++ +T
Sbjct: 248 NTLSQAIRKNDIIARFGGEEFIIILPNTPKNETVAIAEKLKVLISNQKF---SSFNLSLT 304

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
           I+ G+ E   + +    +I RAD+ALY  K  GRN
Sbjct: 305 ITQGLTEYNKNNDNALKMIKRADKALYRGKDKGRN 339


>gi|22298753|ref|NP_682000.1| GGDEF family protein [Thermosynechococcus elongatus BP-1]
 gi|22294934|dbj|BAC08762.1| GGDEF family protein [Thermosynechococcus elongatus BP-1]
          Length = 355

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 90/171 (52%), Gaps = 17/171 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q+S+ D L+ L N   F S L        + +  L+IV  DID+FK  ND +GH  GD
Sbjct: 164 LQQISQQDSLTKLANRRTFESRLRLVWQEAAATHTPLAIVLLDIDHFKDYNDTYGHLAGD 223

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI---IENSQIN 209
           + +  ++  +         V R GGEEF    L  +  +AAI    L +I   I + +I 
Sbjct: 224 RALQRVAYAIKSQVRATDLVARYGGEEF-VLLLSQAHHDAAICI--LERIFNHIRSLEIP 280

Query: 210 ISSGP-SIHITISAG--IAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            +S P   ++T+SAG  IA    ++ PIS +I  AD ALY AK+SGR+R V
Sbjct: 281 HASSPVKPYLTLSAGICIATATPRDCPISELIATADAALYEAKRSGRDRYV 331


>gi|315126379|ref|YP_004068382.1| response regulator [Pseudoalteromonas sp. SM9913]
 gi|315014893|gb|ADT68231.1| response regulator [Pseudoalteromonas sp. SM9913]
          Length = 432

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 14/172 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  L+  D L+ LLN   F+ +           ++ L++   DID+FK+IND FGH  G
Sbjct: 258 QLKDLTIKDPLTNLLNRRGFMETAKLALDECIKDSQHLTLTMIDIDHFKRINDQFGHEGG 317

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++        +   + RLGGEEF   +              L+  ++++ + +S
Sbjct: 318 DSVLQSIAATFKSFCDSDDIIARLGGEEFCIVSPTKCVSTVVKTLAKLQDHLKDNPVQLS 377

Query: 212 SGPSIHITISAGI----AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           SG  +  TIS+G+    +E C    +  ++  AD ALY AK +GRN+ V F+
Sbjct: 378 SGGQVSYTISSGVSSLTSESCS---LQGLLRNADTALYNAKTTGRNQTVVFN 426


>gi|296135644|ref|YP_003642886.1| diguanylate cyclase [Thiomonas intermedia K12]
 gi|295795766|gb|ADG30556.1| diguanylate cyclase [Thiomonas intermedia K12]
          Length = 546

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 8/166 (4%)

Query: 98  NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++SQ  + D L+G LN        +   S +    + L++   D+D+FK +ND  GH  
Sbjct: 354 EQVSQQLQEDPLTGALNRRGLDAEFTRMQSRVVRQGQPLTLALLDLDHFKAVNDTHGHDT 413

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQIN 209
           GD V+  L  Q   +      V R+GGEEF      +  Q++ ++   L     + + + 
Sbjct: 414 GDAVLKALVAQAKRLIRPSDRVARMGGEEFMLLLPDTPVQQSLVVVQRLLVAFSDQTLVQ 473

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S+G  I ++ SAG+AE C  E    I  R D AL  AK++GR RV
Sbjct: 474 DSTGRRIPLSFSAGVAELCPDEDFPAIYQRVDAALLQAKQAGRKRV 519


>gi|213968756|ref|ZP_03396897.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
 gi|301386580|ref|ZP_07234998.1| GGDEF domain protein [Pseudomonas syringae pv. tomato Max13]
 gi|302063330|ref|ZP_07254871.1| GGDEF domain protein [Pseudomonas syringae pv. tomato K40]
 gi|302135358|ref|ZP_07261348.1| GGDEF domain protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213926359|gb|EEB59913.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
          Length = 355

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 117/244 (47%), Gaps = 28/244 (11%)

Query: 24  PHTFMIYF-SIFFSIFIATVIFIANIFLFYIGLTPFYGLE-----YILVENLSLVIISIT 77
           P   MI   S    ++    +F++   L +I L+P  G++     Y+ +  +   + SI 
Sbjct: 99  PIALMIILCSTLLVVYTRDYLFVS--VLSWIILSPAQGIDTDSAAYVFM--MLFFVSSIA 154

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------I 131
           + ++L +     L+++    +R  +LS  D L+ +LN  A + +L   +E+L+       
Sbjct: 155 LGVVLNHTYTRTLRKVLTLESRFRELSLTDDLTDILNRRALMLAL---DEQLANNSGGYF 211

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID FK IND FGH  GD+V+  ++  L    G+  F GR+GGEEF      S E  
Sbjct: 212 LMLDIDNFKTINDQFGHDAGDEVLRLMASCLQQTPGSLAF-GRMGGEEFGVILPVSGEPV 270

Query: 192 AAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           A      L   I  S       P++  +T SAG+A+       S ++  AD  +Y AK+ 
Sbjct: 271 ACDYVLRLLDTIRRS-------PAVSSLTCSAGLADIDANSTSSQVLKTADINMYQAKRE 323

Query: 251 GRNR 254
           G++R
Sbjct: 324 GKDR 327


>gi|153933976|ref|YP_001382759.1| putative diguanylate cyclase [Clostridium botulinum A str. ATCC
           19397]
 gi|153934947|ref|YP_001386310.1| putative diguanylate cyclase [Clostridium botulinum A str. Hall]
 gi|152930020|gb|ABS35520.1| putative diguanylate cyclase [Clostridium botulinum A str. ATCC
           19397]
 gi|152930861|gb|ABS36360.1| putative diguanylate cyclase [Clostridium botulinum A str. Hall]
          Length = 892

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 14/170 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +I  L+  D L+GL N    I ++        NEK +++F D+D+FK IND  GH VGD 
Sbjct: 467 KILGLAYYDSLTGLSNRKKIIETINKTINNYENEKFAVLFIDLDHFKSINDTLGHDVGDY 526

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQIN 209
           V+  +S +  ++      +GRLGG+EF       ++  +E+ A  +   L   I+  + +
Sbjct: 527 VLEKVSARFKMLLSPKHKIGRLGGDEFIIVQNITSISDAEKLACKICTTLNHSIKYKEDD 586

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  G SI I+I     +       ST++  AD A+Y AKK+G  +   +S
Sbjct: 587 LFIGASIGISIYPEDGKDT-----STLMKNADAAMYAAKKNGGYKYEVYS 631


>gi|126661523|ref|ZP_01732571.1| regulatory components of sensory transduction system [Cyanothece
           sp. CCY0110]
 gi|126617189|gb|EAZ88010.1| regulatory components of sensory transduction system [Cyanothece
           sp. CCY0110]
          Length = 458

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 92/174 (52%), Gaps = 27/174 (15%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGD 152
           +++ + ID L+G+ N   F  +L      +  EK  LSI+ FD+DYFK  ND++GH  GD
Sbjct: 287 LNRRATIDGLTGIYNRQTFDQNLIKEWGRARREKQTLSIILFDVDYFKLYNDHYGHQAGD 346

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI- 210
             +  ++  +  +    + FV R GGEEF    L +++Q+ AI+      I+EN Q  I 
Sbjct: 347 DCLKQIAQTVKKILNRSVDFVARYGGEEF-VVILPNTDQQGAII------IVENIQHAIY 399

Query: 211 -------SSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNR 254
                   S  S  ++IS GIA    R    P + +I  AD+ALY AK+ GRNR
Sbjct: 400 TLAIPHKESKVSELVSISVGIASIIPRSASSP-ADLINLADKALYRAKQQGRNR 452


>gi|107028920|ref|YP_626015.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
 gi|116689922|ref|YP_835545.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
 gi|105898084|gb|ABF81042.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
 gi|116648011|gb|ABK08652.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
          Length = 492

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 92/197 (46%), Gaps = 14/197 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128
           I +SLLLG    S L+    + + +  L+R D L+GL N  +F   L +   +       
Sbjct: 300 IALSLLLG----SQLRRRMRAESELVLLARTDGLTGLSNRRSFGEVLDNEWRRARRARSV 355

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187
            S++F D+D FK  ND +GH  GD  +A ++  +      P     R GGEEF      +
Sbjct: 356 FSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTAARYGGEEFVVLLPDT 415

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALY 245
           S+  AA +A  +R  I+   +  +      +T S G+A     +      +I  AD+ALY
Sbjct: 416 SQTGAAQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPDQEGQPDAVIKAADEALY 475

Query: 246 VAKKSGRNRVVCFSDIE 262
            AK +GRN+V      E
Sbjct: 476 YAKATGRNKVAALQPAE 492


>gi|254784461|ref|YP_003071889.1| diguanylate cyclase with PAS/PAC sensor [Teredinibacter turnerae
           T7901]
 gi|237686179|gb|ACR13443.1| diguanylate cyclase with PAS/PAC sensor [Teredinibacter turnerae
           T7901]
          Length = 474

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 10/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
           S LK       ++ +LS  D ++G+ N   F+            Y+    ++  D+D FK
Sbjct: 295 SRLKAQEEEEQKLFKLSSTDSMTGVFNRGYFLELANRAHHQGERYDHNFCVMMLDVDNFK 354

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND FGH  GD+ +  + + L         +GR+GGEEFA     SS  +  +LA+ + 
Sbjct: 355 SINDRFGHAEGDRALTQIGNILKNSVRKTDIIGRVGGEEFAIVLPESSIDQGVVLADKIL 414

Query: 201 KIIENSQINISSGPSIH--ITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             IE+++++      +    T+S G +A+    E  + ++YRADQ LY AK +G+ +VV
Sbjct: 415 YNIEDARMHSDDPDGLGGCPTLSIGLVAKGDENETFNELLYRADQLLYKAKHTGKAKVV 473


>gi|167573038|ref|ZP_02365912.1| putative transmembrane transcriptional sensor regulator
           [Burkholderia oklahomensis C6786]
          Length = 490

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 16/170 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           +++L+  D L+GL N  A   +L     +       L+I+F DID+FK+ ND +GH VGD
Sbjct: 317 LARLAGTDSLTGLHNRRALDETLEREWRRAVCGERPLAILFVDIDHFKRYNDTYGHQVGD 376

Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            V+A +S    Q     G    V R GGEEF      +    A ++A  +R  +    I 
Sbjct: 377 DVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRMGVRMLGIE 434

Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                   +T+S G+A    +      ++ ++  ADQALY AK  GRNRV
Sbjct: 435 HEGSEVGFVTVSVGVAVWQPDGTPAPHVAAVVEAADQALYQAKAGGRNRV 484


>gi|325913953|ref|ZP_08176309.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325539722|gb|EGD11362.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 507

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 89/180 (49%), Gaps = 20/180 (11%)

Query: 96  SYNRISQLSRI---DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145
           S NR+  L+     D L+G+ N     ++L    E        LSI F D+D FK++ND 
Sbjct: 317 SENRMRHLAEQASRDALTGVFNRHQLGTALTHEFELASRQSWPLSIAFIDLDDFKRVNDA 376

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKII 203
            GH VGD+V+   +  L  +  T   V R GGEEF    L ++  +AA++  +  L +  
Sbjct: 377 HGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEF-LVILPNTPADAALMVIERILAETA 435

Query: 204 ENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 +  GP +HIT SAG+A     ER   E I  ++  AD  LY +K  GRNRV  +
Sbjct: 436 RTPMAQLQGGP-LHITFSAGLATHGGIER-QFESIEHLLQAADSTLYRSKHRGRNRVTAY 493


>gi|255522684|ref|ZP_05389921.1| GGDEF domain protein [Listeria monocytogenes FSL J1-175]
          Length = 264

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 15/190 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +LL+ Y    I K   +  N +++ +  D L+ L N   F    G          + LS+
Sbjct: 73  ALLVFYACNYIDKSNLVIQN-LTETAMTDSLTNLPNMRFFTQQFGWIFAKSQKRKKSLSL 131

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ 190
              DID+FK+IND  GH  G+ V+A  S  L    F       R+GGEEFA        +
Sbjct: 132 FIIDIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTE 191

Query: 191 EAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVA 247
           +AA++A+  R+ +E ++   N +SG    +T+S G+A        +  ++  ADQALY A
Sbjct: 192 QAALIADFFREEVERAKFPYNPASG---KVTVSIGVASASSNFSTTESLFEAADQALYQA 248

Query: 248 KKSGRNRVVC 257
           K++GRN++  
Sbjct: 249 KQNGRNQIAV 258


>gi|77918829|ref|YP_356644.1| GGDEF domain-containing protein [Pelobacter carbinolicus DSM 2380]
 gi|77544912|gb|ABA88474.1| diguanylate cyclase [Pelobacter carbinolicus DSM 2380]
          Length = 517

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 94/184 (51%), Gaps = 11/184 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           S   + +L  +   + +L+  D L+GL N   F++ +         Y   LS+VFFD+D+
Sbjct: 333 SQQCINKLLDANKSLRKLAYRDELTGLYNQRFFLTEMDKELARAKRYGYSLSLVFFDVDF 392

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND  GH  GD V+  +S ++     +   V R GG+EFA     + + + AI    
Sbjct: 393 FKNINDTHGHLAGDAVLRHVSAKVTSCVRSCDTVVRYGGDEFAIIMPETDQGDLAIFTER 452

Query: 199 LRKIIENSQINISSGPSIHITIS-AGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
           LR  +E   + + +G +I +TIS  G +     E ++   ++  ADQA+Y +KK GRN V
Sbjct: 453 LRFEVEKMLVPM-NGKTIAVTISIGGTSFDGRDESVTRYVLLNVADQAIYQSKKLGRNTV 511

Query: 256 VCFS 259
              S
Sbjct: 512 TIQS 515


>gi|326385565|ref|ZP_08207199.1| hypothetical protein Y88_1763 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209899|gb|EGD60682.1| hypothetical protein Y88_1763 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 602

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 82/161 (50%), Gaps = 13/161 (8%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      +L           + LS+V  D+D+FK+ ND FGH  GD V+  ++
Sbjct: 434 DPLTGLFNRRYMEETLALEIVRVLRSGDPLSLVMCDVDHFKRFNDEFGHDAGDAVLQAVA 493

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--H 217
            ++   F     + R GGEEF   A GS+  + A   + +R+ I  S++ +  G      
Sbjct: 494 VEMRSRFRDGDVICRFGGEEFTIIAPGSTAADMAARVDVVRQAI--SELTVHQGGRTLGA 551

Query: 218 ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           IT+S G+   +   +   ST+I  AD  LY AK+ GRNRVV
Sbjct: 552 ITMSFGVTAWDNSMERDGSTLIKTADAGLYRAKREGRNRVV 592


>gi|310659718|ref|YP_003937439.1| hypothetical protein CLOST_2418 [Clostridium sticklandii DSM 519]
 gi|308826496|emb|CBH22534.1| protein of unknown function [Clostridium sticklandii]
          Length = 250

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 84/182 (46%), Gaps = 11/182 (6%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVF 133
           LL  +     KEL     +   L+  D L+GL N           I+    Y    S++ 
Sbjct: 67  LLEIMVNEKTKELEKLLQQTMVLAITDKLTGLYNRLEIDKRLDEAIAGFKRYAAAFSVLI 126

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK++ND +GH  GD  +   ++ L         +GR GGEEF      +   E+ 
Sbjct: 127 VDVDNFKRVNDVYGHQKGDWCLQKTAEILKERMRKTDVLGRWGGEEFIVICPSTHLAESV 186

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +L   +RK IE    +I      + T+S GI+     +  + II RAD+ LY+AK  GRN
Sbjct: 187 LLGESIRKAIEEESFDIEG----NYTVSIGISSVQKDDEANCIIKRADENLYLAKSKGRN 242

Query: 254 RV 255
           RV
Sbjct: 243 RV 244


>gi|262403018|ref|ZP_06079578.1| sensory box/GGDEF family protein [Vibrio sp. RC586]
 gi|262350517|gb|EEY99650.1| sensory box/GGDEF family protein [Vibrio sp. RC586]
          Length = 308

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 79/166 (47%), Gaps = 11/166 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+ L N     S   S        N+ LS +  DID FK IND+FGH  GD+V
Sbjct: 142 ELANTDSLTQLSNRRKLWSDFRSAFSRAKHSNQPLSCISIDIDNFKLINDHFGHDKGDEV 201

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           + FL+     +       GR+GGEEF      +   +A  LA  +R              
Sbjct: 202 LCFLAKLFYRLASEHALCGRVGGEEFIIVLENTPLADAFNLAEAIRHHFSQHAF---FEQ 258

Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             H+ + AG++  R     I+ I  R+DQALY AK+SGRNR   ++
Sbjct: 259 QEHVYLCAGVSTMRISDHDITDIYRRSDQALYQAKRSGRNRCCAYN 304


>gi|229592005|ref|YP_002874124.1| putative regulatory protein [Pseudomonas fluorescens SBW25]
 gi|229363871|emb|CAY51345.1| putative regulatory protein [Pseudomonas fluorescens SBW25]
          Length = 801

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 60/184 (32%), Positives = 90/184 (48%), Gaps = 13/184 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
           +L  GY+S   + +L      +  LS  D L+G+ N   F       +  L   +  LS+
Sbjct: 618 TLWHGYVSD--ISDLKRVEEELRALSITDSLTGIHNRRYFQDRLKAEMVRLNRTSGALSV 675

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK+IND  GH VGD V+  L  ++           RLGGEEF      +   +
Sbjct: 676 IMLDIDHFKRINDQHGHAVGDGVLQELCKRISQRLRRTDVFCRLGGEEFMVLCPHTDGDQ 735

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A  LA +L   + ++ +     P   +T S G+A     E I  ++ RAD A+YVAK+ G
Sbjct: 736 AYSLATELWASLRSAPME----PVGIVTASFGVASWRVDEGIDGLLLRADSAVYVAKQGG 791

Query: 252 RNRV 255
           R+RV
Sbjct: 792 RDRV 795


>gi|183179368|ref|ZP_02957579.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|183012779|gb|EDT88079.1| GGDEF family protein [Vibrio cholerae MZO-3]
          Length = 443

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 15/166 (9%)

Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+G+LN  AF   L          N KL+++FFD+D FK+IND  GH VGD V+
Sbjct: 269 LSERDSLTGILNRRAFKQQLSHALIKAKRSNMKLALLFFDLDKFKEINDTKGHEVGDLVL 328

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGP 214
             ++ +L        F GRLGG+EF         Q+ + + N   +++E  Q  +  +  
Sbjct: 329 QEIAQRLKGSIRESDFCGRLGGDEFVVCL--DLLQDHSGVINKAYQMLEKLQKPLQLNQE 386

Query: 215 SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S+ I +S G+A   E+  + P   ++  AD+A+Y AK    N V C
Sbjct: 387 SLDIGVSIGVALYPEQATQVP--ELLRIADEAMYTAKHQSGNTVYC 430


>gi|189425499|ref|YP_001952676.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter lovleyi SZ]
 gi|189421758|gb|ACD96156.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter lovleyi SZ]
          Length = 316

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 84/177 (47%), Gaps = 20/177 (11%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S   I QLS  D L+G  N           I     Y   LS++  D+D+FK+IND +GH
Sbjct: 135 SLEEIKQLSIRDALTGAFNRGYLDQHLPHEIRRADRYLRDLSLIMMDLDHFKKINDTWGH 194

Query: 149 PVGDKVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GD V+      + ++ GT      +V R GGEEF      +      ++A  LR +IE
Sbjct: 195 QAGDAVLQHC---IRIIAGTIRHEVDWVARYGGEEFVLVLPETDRTGCRVVAERLRSLIE 251

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIS-----TIIYRADQALYVAKKSGRNRVV 256
            +  +  S  ++ IT S G   R   +  +      ++  ADQ LY AK++GRNRVV
Sbjct: 252 AAPCSFRSA-TLGITASFGTVTRTPADSRAINSPDQLLNLADQCLYAAKQAGRNRVV 307


>gi|120402963|ref|YP_952792.1| GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Mycobacterium vanbaalenii PYR-1]
 gi|119955781|gb|ABM12786.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Mycobacterium vanbaalenii PYR-1]
          Length = 617

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 20/193 (10%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------- 129
           I+ L   +   +  E  + Y     L+  D L+GL N  A ++ L   +E+L        
Sbjct: 163 IASLFAQVQARVQAEEQLRY-----LAEHDDLTGLYNRRALLAHL---DERLAEGRPGPV 214

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S +FFD+D  K IND  GH  GD  I  L+++L      P  + RLGG+EF        +
Sbjct: 215 SALFFDLDRLKAINDYLGHTAGDWFIRVLAERLRRGADCPNIIARLGGDEFVLVPTVPMD 274

Query: 190 QEAA-ILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVA 247
             AA  LA+ L+  +   +++I  G  +  T+S G+A+    ++  S ++ RADQA+  A
Sbjct: 275 GAAAEALAHRLQSTL-RERVSI-DGEMLTRTVSIGVAQGIPGRDTTSDLLRRADQAVLTA 332

Query: 248 KKSGRNRVVCFSD 260
           K SG N VV F+D
Sbjct: 333 KGSGGNEVVVFTD 345


>gi|260770460|ref|ZP_05879393.1| diguanylate cyclase [Vibrio furnissii CIP 102972]
 gi|260615798|gb|EEX40984.1| diguanylate cyclase [Vibrio furnissii CIP 102972]
          Length = 399

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 113/249 (45%), Gaps = 15/249 (6%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL----VII 74
           L S  P + +++   F  I    ++F       ++ L     L  + V+ L L    ++ 
Sbjct: 152 LVSAYPTSQIVFMVFFLGIAQMWIVFTETATRSFVSLALLSTLTAVFVDVLGLSDRAMVY 211

Query: 75  SITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YN 126
             TI LL      G  +  + +   ++ +LS  D L+ +     FI ++         YN
Sbjct: 212 QFTIYLLAANTYFGLWVPHILVDNQKLRRLSEQDILTDVQTRQFFIRNVHDEVIRARRYN 271

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           + +S+V FD+D FK INDN GH VGDKV+  +++ +         +GR GG+EF     G
Sbjct: 272 QPVSMVLFDVDNFKAINDNHGHIVGDKVLIAIANLVKQEIRPSDKIGRFGGDEFMLLLPG 331

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
                A  +A  LR+ I    + I     I +T S G+ E    +   +   +AD+ L  
Sbjct: 332 DDLSGAIRVAERLRQAI--GHLYIDDFGDI-VTCSFGVTEMKSNDNFVSAFEQADKLLLA 388

Query: 247 AKKSGRNRV 255
           AKK GR+RV
Sbjct: 389 AKKEGRHRV 397


>gi|225872968|ref|YP_002754427.1| GAF domain/GGDEF domain protein [Acidobacterium capsulatum ATCC
           51196]
 gi|225791789|gb|ACO31879.1| GAF domain/GGDEF domain protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 369

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 84/177 (47%), Gaps = 20/177 (11%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + ++   D L+G+ N  AF   L             LS++  D+D+FK++ND  GH  GD
Sbjct: 194 LQEMVTTDALTGVKNRRAFDEGLQQAWKMSARTKSPLSLLMVDVDHFKRVNDTLGHEAGD 253

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L  +  +   V R GGEEF     G+  + A   A  LR  I N  ++   
Sbjct: 254 DVLRLVAQTLQFMTRSTDMVARYGGEEFVVVLPGTEAEPAVAFAEQLRLNIAN--LSWRG 311

Query: 213 GP-SIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            P ++ I + +G       C       ++  AD ALY AK SGRNRV+ F D E ++
Sbjct: 312 HPLTVSIGVDSGSGSGKTECE------LVAHADAALYRAKNSGRNRVLRF-DPEKDS 361


>gi|114777422|ref|ZP_01452419.1| diguanylate cyclase (GGDEF domain) [Mariprofundus ferrooxydans
           PV-1]
 gi|114552204|gb|EAU54706.1| diguanylate cyclase (GGDEF domain) [Mariprofundus ferrooxydans
           PV-1]
          Length = 411

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 6/169 (3%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           L E+  +  R    +R D L+GL N    + F++SLG  +    +V  D+D FK IND +
Sbjct: 240 LTEMSDNLARAKLDARNDPLTGLANRRHLAEFLNSLGKNS--FCVVICDVDNFKNINDTY 297

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+++  L+  L+    +     R+GGEEF      +  Q    +A  LR  ++  
Sbjct: 298 GHDAGDEILRQLAAILLGSTRSTDLAARIGGEEFCIVFPDTDLQSCVGMAESLRHSVDLQ 357

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  ++G  I +TIS G+A     E  +     AD+ALY +K++GRN+V
Sbjct: 358 PLKTAAG-DIAVTISIGLAPHKEDENHAATFKAADKALYQSKENGRNQV 405


>gi|119773207|ref|YP_925947.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119765707|gb|ABL98277.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella amazonensis SB2B]
          Length = 305

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 100/207 (48%), Gaps = 19/207 (9%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--- 115
           YGLE   V+    +   I  +++   +   I  +L    +R+  ++  D L+GL N    
Sbjct: 95  YGLELGAVD---YITKPIRPAIVRARVCAHI--QLKQQRDRLQSMAMHDQLTGLYNRHFL 149

Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
               S  ++ +  +   +++V  D+D+FK++NDN+GH VGDKV+  ++  L         
Sbjct: 150 IECASQRLARVARHRNPMTLVLMDVDHFKRVNDNYGHHVGDKVLIEVARLLSTNMRREDV 209

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           V RLGGEEF    +  S   AA     LR ++E  + +      I +T S G+ E   + 
Sbjct: 210 VARLGGEEF-VMLMDCSLDNAAAKVEHLRHLLEALEPD-----GIKVTGSFGLVEASPYN 263

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVC 257
              S ++  AD  +Y AK  GRN VVC
Sbjct: 264 ADFSHLLVLADDGVYRAKTQGRNCVVC 290


>gi|134291596|ref|YP_001115365.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
 gi|134134785|gb|ABO59110.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
          Length = 513

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 10/166 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+R D L+GL N  AF  +L             LS++F DID FK  ND++GH  GD
Sbjct: 334 LQRLARRDALTGLENRGAFDETLRQEWANTLRTGRHLSLLFIDIDQFKSYNDHYGHQSGD 393

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           + +  ++  +      P   V R GGEEF      +  + AA +A ++R+ I +  +   
Sbjct: 394 RALKAVAHCISACVSRPSDHVARYGGEEFVVILPETDVEGAAAVAEEIRQAIHDMHVAHV 453

Query: 212 SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255
                ++T S G++   H        +I  AD A+Y AK  GRNRV
Sbjct: 454 KSRFNYVTASIGVSSSAHPAVHDGDALIRVADLAVYEAKSQGRNRV 499


>gi|332994223|gb|AEF04278.1| GGDEF domain-containing protein [Alteromonas sp. SN2]
          Length = 517

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 77/171 (45%), Gaps = 20/171 (11%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS+ D L+ L N  A+       + S     + L++   DID+FK IND FGH  GDK +
Sbjct: 353 LSQTDPLTRLPNRQAYNEKLSKAVQSWQDNGDDLAVAVIDIDHFKSINDRFGHAAGDKTL 412

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP- 214
             +   L        F+ R GGEEF     G ++Q+   L   +R         ++S P 
Sbjct: 413 QVVGKNLKQQLTENTFMARWGGEEFVLLLPGMNKQKVISLLETMR-------TKLASLPF 465

Query: 215 -----SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                 + IT S G +     +    +  RAD  LY AK SGRNRV+   D
Sbjct: 466 KFKQEKVTITASFGASFFNKGDTPDAVFERADNLLYQAKNSGRNRVITDRD 516


>gi|330721091|gb|EGG99228.1| GGDEF/EAL-domain containing protein [gamma proteobacterium
           IMCC2047]
          Length = 724

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 92/178 (51%), Gaps = 26/178 (14%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N +AF+  L           E+L+++F D+D FK +ND  GH VGD V+  ++
Sbjct: 287 DSLTNLPNRAAFMERLQHLLYQAERSGERLAVIFIDVDNFKLVNDQHGHAVGDYVLTVIA 346

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA--ILANDLRKII-----ENSQINISS 212
            +L+        +GRLGG+EF  A    S+  A   +  N LR+I      EN++  +S 
Sbjct: 347 KRLIRCVRKNDIIGRLGGDEFIVALSDVSDAYAPEQVARNILREITHEISKENNRFTMSC 406

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS-----DIENNT 265
             SI I+I    A     + I ++I  AD A+Y AK+SGRN    F      DIEN++
Sbjct: 407 --SIGISIYPDDA-----QVIDSLINHADVAMYRAKESGRNNYQFFKASMKEDIENSS 457


>gi|330505313|ref|YP_004382182.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328919599|gb|AEB60430.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 429

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 101/220 (45%), Gaps = 29/220 (13%)

Query: 55  LTPFYGLEYILVENLSLV-IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           L   +GL ++L +   L   + + +SL++  +  ++  E +       Q++  D L+GL 
Sbjct: 199 LVGLFGLLWMLPQVFILANALQVMVSLVMLMLVAAVAHEAY-------QMAFRDELTGLP 251

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A    L     +  I   D+D+FK+ ND  GH VGD+V+  ++ QL  V G      
Sbjct: 252 GRRALNERLQRLGREYVIAMVDVDHFKKFNDTHGHDVGDQVLRLVASQLRKVGGGGKAY- 310

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---SSGPS--------------- 215
           R GGEEF     G S ++       +R  IE  ++ +    S PS               
Sbjct: 311 RYGGEEFTLLFPGKSVEQCMPYMEAVRLAIEQYRMQLRDKQSRPSDDREGKQRRAGKAAS 370

Query: 216 -IHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRN 253
            + +T+S G+AER   +     +I  AD+ALY AK +GRN
Sbjct: 371 EVSVTVSMGVAERQSEQRNPQEVIKEADKALYSAKAAGRN 410


>gi|262171751|ref|ZP_06039429.1| GGDEF family protein [Vibrio mimicus MB-451]
 gi|261892827|gb|EEY38813.1| GGDEF family protein [Vibrio mimicus MB-451]
          Length = 371

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 17/181 (9%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIV--FFDIDYFKQIN 143
           K+L+ +  ++  LS  D L+GL N    +  L      S  +K   V    D+D FK++N
Sbjct: 193 KQLYQANRQLEALSLTDSLTGLPNRRKAMHQLALHWNLSREQKKPFVCVMIDVDGFKEVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D++GH +GDKV+  ++  L   F     V RLGG+EF A    +       +A  +   +
Sbjct: 253 DSYGHDIGDKVLTIIAHALKDHFRNDDLVCRLGGDEFLAICPNTDAVSGVHIAEHVCDEV 312

Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           E  +I +  G     ++S G+AE     + H E    ++  ADQA+Y+AK +G+NRV  F
Sbjct: 313 ELLEIPV-EGIHWQGSVSMGVAEFDPNMKDHHE----LLRAADQAVYLAKNNGKNRVCAF 367

Query: 259 S 259
           +
Sbjct: 368 N 368


>gi|262171600|ref|ZP_06039278.1| GGDEF family protein [Vibrio mimicus MB-451]
 gi|261892676|gb|EEY38662.1| GGDEF family protein [Vibrio mimicus MB-451]
          Length = 443

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 85/168 (50%), Gaps = 19/168 (11%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+GLLN  AF   L          N KL+++FFD+D FK+IND  GH VGD V+
Sbjct: 269 LSERDSLTGLLNRRAFKQQLSQALVKAKRSNLKLALLFFDLDKFKEINDTKGHEVGDIVL 328

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAA------ALGSSEQEAAILANDLRKIIENSQIN 209
             ++ +L        F GRLGG+EF           G  ++   IL   L+ I  N + +
Sbjct: 329 REVAQRLKATIRESDFCGRLGGDEFVVCLDILQDHSGVRDKSYQILDKLLKPIRANDE-D 387

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G SI I +     E+  + P   ++  AD+A+YVAK    + + C
Sbjct: 388 LSVGVSIGIAL---YPEQSTQMP--GLLRIADEAMYVAKHQSGSMIYC 430


>gi|227904327|ref|ZP_04022132.1| ABC superfamily ATP binding cassette transporter, binding protein
           [Lactobacillus acidophilus ATCC 4796]
 gi|227867975|gb|EEJ75396.1| ABC superfamily ATP binding cassette transporter, binding protein
           [Lactobacillus acidophilus ATCC 4796]
          Length = 349

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 9/159 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GLLN+ AF   +   ++  S     I   DID+FKQ+ND +GH  G+ V++  S +
Sbjct: 189 DDLTGLLNYRAFDEEMQGLSKDESNMPIFIAVLDIDHFKQVNDTYGHLNGNTVLSTFSKK 248

Query: 162 LVVV----FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           L +     F     V R GGEEF          +   + N + K      +    G  I 
Sbjct: 249 LKLDIHHNFDPHCAVYRFGGEEFTILIKTKDNTKIIKILNSINKYYSKHPVITDEGQKIF 308

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            + S G+ E  + E  +  + RAD+ +Y AKK+GR +++
Sbjct: 309 FSFSGGLTEHHNNEKFTKTLERADELVYQAKKTGRAKIL 347


>gi|209521190|ref|ZP_03269914.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. H160]
 gi|209498362|gb|EDZ98493.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. H160]
          Length = 667

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 94/182 (51%), Gaps = 11/182 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYF 139
           SG+ + E  ++ +R+ + +  D L+GL N +A    +       +  E + ++F D+D F
Sbjct: 220 SGTDITEQRLAQDRLIEQATTDPLTGLANRNAIQERIQIAIEQAAPGETVGVLFLDLDNF 279

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND++GH  GD++I  +SD +         + RLGG+EF   A   S   A  L N  
Sbjct: 280 KTVNDHYGHVFGDRLICDVSDAIRNCLNPGDSLARLGGDEFIVLATKGS---ADALENTA 336

Query: 200 RKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++I++  ++  + G   ++   S GIA    H + + ++I  AD A+YVAK  G+     
Sbjct: 337 QRILDRMRMPFAVGLVEVYTGCSIGIARWPEHGDSLESLIRSADTAMYVAKDEGKRTHRV 396

Query: 258 FS 259
           FS
Sbjct: 397 FS 398


>gi|330895404|gb|EGH27742.1| GGDEF domain-containing protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 298

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 113/234 (48%), Gaps = 23/234 (9%)

Query: 31  FSIFFSIFIATVIFIANIFL--FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG- 87
            S+FF  FI  +   A I+L  + I LT       + V +  L  + +  S LLG     
Sbjct: 45  MSVFFVKFIDYIAAAALIWLIMWQIDLTA------VGVNHAPLFYVFLISSTLLGGCLNA 98

Query: 88  ---SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVF--FDIDYF 139
              S++ +   + +R  +LS  D L+   N  A ++SL    S  EK S+ F   D+D+F
Sbjct: 99  TFLSLVMQTMAARDRYQELSETDTLTHAPNRRALVASLNTALSCAEKSSLWFAMIDLDHF 158

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND  GH VGD V+   +  L    G   F GRLGGEEF      ++  +A    + L
Sbjct: 159 KSINDTHGHDVGDNVLVGFATLLKGTKGLIAF-GRLGGEEFGVILSAANAIDA---VHAL 214

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +++  +Q +      +  + SAG+A     E ++ ++  AD+ LY AK++GR 
Sbjct: 215 EELLRRAQKD--EAAQVPYSFSAGVASLSRMETVNDLLKEADENLYHAKRNGRK 266


>gi|254475503|ref|ZP_05088889.1| putative response regulator PleD [Ruegeria sp. R11]
 gi|214029746|gb|EEB70581.1| putative response regulator PleD [Ruegeria sp. R11]
          Length = 480

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 21/170 (12%)

Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GL N             S     +  +++  D+D+FKQIND +GHPVGD V+   +
Sbjct: 304 DPMTGLFNRRYAKPFLDQVAGSAAKSGDPFAVMLADLDHFKQINDIYGHPVGDAVLIEAA 363

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHI 218
            +L         V R+GGEEF     G  E   A +A+DL   I +   +I+     IH+
Sbjct: 364 KRLQSALRPVDLVARVGGEEFMIVLPGLGEAMTAAVASDLCNRINSKPFHIAGVDRPIHV 423

Query: 219 TISAGIA-------------ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           TIS G                +  +  ++ +I  AD+ALY AK +GRNRV
Sbjct: 424 TISIGAVIGGGTQHSEILRNPQAREACVNDLITNADRALYSAKHAGRNRV 473


>gi|152984602|ref|YP_001347191.1| hypothetical protein PSPA7_1808 [Pseudomonas aeruginosa PA7]
 gi|150959760|gb|ABR81785.1| membrane protein, putative [Pseudomonas aeruginosa PA7]
          Length = 726

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 99/186 (53%), Gaps = 22/186 (11%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           ++L +L  ++  + QL+R D L+GL N +AF      +        + L+++F D+D+FK
Sbjct: 272 ALLNQLDHAHASLRQLARYDALTGLQNRTAFNEVFAQHLQNCQLRGKGLAVMFLDLDHFK 331

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-L 199
           +IND+ GH  GD+++  +S+++  V      V R  G+EF   A  + + EA IL+   L
Sbjct: 332 RINDSLGHDSGDELLKIVSERIRSVLRDTDVVARFAGDEFCVLADLAQDHEAHILSQRLL 391

Query: 200 RKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRN 253
           +K+ E   ++   G ++ +T S G++      E+C +     ++  A  AL+ +K  GRN
Sbjct: 392 QKMKEPIALD---GRTLVMTASIGVSLYPNDGEQCEE-----LLKNAGLALHQSKSCGRN 443

Query: 254 RVVCFS 259
               FS
Sbjct: 444 NAQFFS 449


>gi|90577454|ref|ZP_01233265.1| hypothetical GGDEF family protein [Vibrio angustum S14]
 gi|90440540|gb|EAS65720.1| hypothetical GGDEF family protein [Vibrio angustum S14]
          Length = 413

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 21/176 (11%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +L+ ID L+ +    A  + L       ++   D+D+FK+ ND +GH  GD V+  ++  
Sbjct: 237 ELAFIDQLTEIPGRRALDNELKHLGRTYTLAMIDVDHFKKFNDKYGHDTGDDVLKLVATL 296

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI----------- 210
           +  + G    V R GGEEF     G S  E      +LR+ I   ++ I           
Sbjct: 297 MKDIDGGGN-VYRYGGEEFTILFKGKSIDECLPFLEELREKIAKYKMIIRDHDKRPTSNR 355

Query: 211 ---------SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                     +  S+ +T+S G+AE   ++    ++ +AD ALY AK++GRNRV C
Sbjct: 356 AGSKARGQDKTSKSVKVTVSIGVAENYLEQEPEDVLKQADNALYQAKEAGRNRVQC 411


>gi|71905700|ref|YP_283287.1| diguanylate cyclase/phosphodiesterase [Dechloromonas aromatica RCB]
 gi|71845321|gb|AAZ44817.1| diguanylate cyclase/phosphodiesterase [Dechloromonas aromatica RCB]
          Length = 783

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 79/160 (49%), Gaps = 10/160 (6%)

Query: 103 LSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           ++  D L+GL N + F + L            +  ++++FDID FK IND FGH VGD V
Sbjct: 362 MAERDPLTGLANRARFAAELDRLVSRFQRDATQSGAVLYFDIDEFKTINDTFGHRVGDNV 421

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   +D +  +  T   + RLGG+EFA  A G+       +A  + K +         G 
Sbjct: 422 LVRTADVVSKLVRTGELLARLGGDEFAIVAPGADLDGVQAMAERVVKALTGLSFEF-DGK 480

Query: 215 SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
              +TIS GIA    H      ++  AD A+Y AK+SG+N
Sbjct: 481 RFGLTISLGIALLPEHAASAEELVAHADAAMYQAKRSGKN 520


>gi|296102342|ref|YP_003612488.1| putative diguanylate cyclase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295056801|gb|ADF61539.1| putative diguanylate cyclase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 330

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 17/197 (8%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129
           +L +I+I + L L  ++ SI   L I    + +++ +D L  + N       +     KL
Sbjct: 137 TLPLIAIYL-LALSILTDSIALRLRIKSRELERIAMMDPLLDIANRRLLEKRIDHELNKL 195

Query: 130 -------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                  +++F DID FK +ND FGH VGD ++A +S  L +         RLGG+EF  
Sbjct: 196 RQTCRESALMFIDIDNFKDVNDRFGHKVGDALLAAVSQILHLSTRPNDTPARLGGDEFVV 255

Query: 183 AALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCH-KEPISTIIY-- 238
               ++ +EA ++A   R+I++ + +    +  ++H T+S GIA  C  +E IS   +  
Sbjct: 256 LLPDTTLEEAQVVA---RRIMDAAAMKKEVAQETVHCTLSIGIA--CATREMISVTDWLQ 310

Query: 239 RADQALYVAKKSGRNRV 255
            AD ALY AK+ G+NR+
Sbjct: 311 AADNALYRAKRDGKNRI 327


>gi|254786916|ref|YP_003074345.1| response regulator receiver domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237684302|gb|ACR11566.1| response regulator receiver domain protein [Teredinibacter turnerae
           T7901]
          Length = 428

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 98/208 (47%), Gaps = 13/208 (6%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G +  LV+ ++ VI+S  I  +   ++  +  EL      + QLS+ D L+GL N   F 
Sbjct: 96  GGDDYLVKPVNQVILSAKIRAMERILN--MRNELNRLNEELVQLSQRDSLTGLFNRRTFE 153

Query: 120 SS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-F 171
                         + ++++  DIDYFK  ND +GH  GD+ I  +++ L      P   
Sbjct: 154 EKSTEVWRHATRSQQPVTVILMDIDYFKLYNDEYGHQAGDRCIRMVANALHRCLNRPNDI 213

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHK 230
           V R GGEEF A    +  + A  L   +R+ +E   I +  S  S  +T+S G       
Sbjct: 214 VARYGGEEFIALLPNTPIEGAQHLTELIRETVEEMHIKHRGSKMSDRVTVSLGSTTTNFT 273

Query: 231 EPI--STIIYRADQALYVAKKSGRNRVV 256
             I  + +I +AD+ALY AK  GRNR  
Sbjct: 274 TAIDLNRLISQADRALYEAKNDGRNRAT 301


>gi|224373365|ref|YP_002607737.1| inner membrane protein YcdT [Nautilia profundicola AmH]
 gi|223589588|gb|ACM93324.1| inner membrane protein YcdT [Nautilia profundicola AmH]
          Length = 411

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 101/202 (50%), Gaps = 12/202 (5%)

Query: 62  EYILVENLSLV--IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           EY L++ +S++  II + + +    I   I+ +L     +I + S ID L+ + N   F 
Sbjct: 213 EYALIKKISMIFNIILLGLFIFTYIIIYLIILKLDKKDKQIIESSYIDELTQIFNRKKFN 272

Query: 120 SSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           + +      S  +   ++  DID+FK+IND  GHPVGD V+  LS  +     +     R
Sbjct: 273 TDIKNNIKNSDTQTPYLMLIDIDHFKKINDTHGHPVGDYVLEQLSKLISDNIRSNDKFYR 332

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
           +GGEEFA  +   S ++    A  ++KIIEN     +      ITIS G  +    E   
Sbjct: 333 IGGEEFAIISNQKSNEDEMKFAEKIKKIIENYNFEKAGD----ITISIGFTKYQPNESYH 388

Query: 235 TIIYRADQALYVAKKSGRNRVV 256
               RAD+ALY AKK+ RN +V
Sbjct: 389 KWYKRADEALYEAKKT-RNTIV 409


>gi|119493972|ref|ZP_01624532.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]
 gi|119452293|gb|EAW33489.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]
          Length = 328

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 95/182 (52%), Gaps = 11/182 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDY 138
           S ++ ++L  +  ++ Q++ +D L+ + N   F   L S  ++LS       ++  D+D+
Sbjct: 144 SRTLTEQLETANQKLEQIAALDSLTQIANRRRFDQGLHSEWKRLSRERLPLSLILCDVDF 203

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILAN 197
           FK  ND +GH  GD  +  ++  +      P   V R GGEEFA     +  Q A  +A 
Sbjct: 204 FKAYNDTYGHRAGDLCLQQVAQTICEKVQRPADLVARYGGEEFAIILPNTQLQGAVKVAE 263

Query: 198 DLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNR 254
           D+R  +   +I + +S  S  +T+S G+A       +S   +I  AD+ALY AKK+GR+R
Sbjct: 264 DIRHSLHAIEIEHPNSRVSNFVTLSLGVASLIPNHYLSEDFLIGEADRALYEAKKAGRDR 323

Query: 255 VV 256
           VV
Sbjct: 324 VV 325


>gi|39936853|ref|NP_949129.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009]
 gi|39650710|emb|CAE29233.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris
           CGA009]
          Length = 379

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 17/177 (9%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNH-----------SAFISSLGSYNEKLSIVFFDIDYF 139
           +EL  +   + +LS  D L+G+ N            ++ + SLG      S++  D+D+F
Sbjct: 206 QELRQANAALGRLSTTDPLTGVFNRRYLDELIEQETASLVPSLGQ-----SVLMIDVDHF 260

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND+ GH  GD  +  +   +     +   V R GGEEFA    G  E E    A  L
Sbjct: 261 KLFNDHGGHAAGDSCLQQIVTAVRRNLRSCDVVVRYGGEEFAVVLPGLDEAELRETAERL 320

Query: 200 RKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              + + QI +   G    +TIS GIA     E ++  I RADQ+LY AK++GRNRV
Sbjct: 321 CHAVSDLQIPHPGLGQGRVVTISVGIAPPVPAETLADAIQRADQSLYRAKRAGRNRV 377


>gi|89092440|ref|ZP_01165394.1| sensory box/ggdef family protein [Oceanospirillum sp. MED92]
 gi|89083528|gb|EAR62746.1| sensory box/ggdef family protein [Oceanospirillum sp. MED92]
          Length = 505

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 12/170 (7%)

Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +LS  D L+ L N  +F       I     +N  +++   D+D+FK+ ND +GHP GDK
Sbjct: 328 KKLSITDKLTTLPNRRSFEEVLQREIKQAYRHNRPITLAILDVDFFKRYNDTYGHPQGDK 387

Query: 154 VIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
            +  ++D ++     P  F  R+GGEEFA        Q++ +  + +R+ +E  +I  S 
Sbjct: 388 ALRMVADCILECLRRPTDFAFRIGGEEFAIVIADQDLQQSQVFLDSIREKVEALEIPHSK 447

Query: 212 SGPSIHITISAG-IAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFS 259
           S  S  +TIS G    R    P   ++Y  AD+ALY+AK S RN+ V  S
Sbjct: 448 SDVSGFVTISIGAFWTRGSDNPDKALLYAEADKALYLAKNS-RNQCVVQS 496


>gi|23014533|ref|ZP_00054344.1| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 594

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 15/172 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+ ID L+G+ N   F  +LG    +       L+++  D+D+FK  ND++GH  G
Sbjct: 417 RLRHLAMIDGLTGIANRRTFDETLGQEWRRASRAGTPLALLMIDVDHFKAYNDHYGHQAG 476

Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQIN 209
           D+ +  ++  L      P   V R GGEEF     G +  +A  LA  +R  + E    +
Sbjct: 477 DECLKTVAATLAATAKRPADLVARYGGEEFGVILPGCTLTDAQTLAEKMRLAVAELHLPH 536

Query: 210 ISSGPSIHITISAG------IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++S  S  +TIS G      +A +       ++I  AD ALY AK SGRN V
Sbjct: 537 LASQTSGEVTISIGVSCLNLVATQGDSLDTQSLIAEADTALYRAKTSGRNCV 588


>gi|268679033|ref|YP_003303464.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617064|gb|ACZ11429.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 768

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 20/186 (10%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVF 133
           L+GY +   ++       R+ +LS  D L+GL N        +  +S    ++   SI+ 
Sbjct: 583 LIGYTA---IRTDITDKKRVEELSITDRLTGLYNRLKLDELFAHHLSIARRHHTPFSIIL 639

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID FK +ND +GH VGD ++   +  +     +    GR GGEEF      S  + A+
Sbjct: 640 LDIDKFKSVNDTYGHQVGDTILQEFALCVKAQIRSEDIFGRWGGEEFLLLLPNSPLENAS 699

Query: 194 ILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +LA  LR  + +   SQ+ +        T S G+A     +   +++ R D+ALY AK++
Sbjct: 700 LLAEKLRLCVASFSFSQVGMK-------TASFGVATFHEGDDEKSMMVRVDEALYRAKEN 752

Query: 251 GRNRVV 256
           GRN+VV
Sbjct: 753 GRNQVV 758


>gi|209546961|ref|YP_002278879.1| diguanylate cyclase with PAS/PAC sensor [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209538205|gb|ACI58139.1| diguanylate cyclase with PAS/PAC sensor [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 642

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 82/179 (45%), Gaps = 13/179 (7%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L +S   +  L+  D L+G++N   F        S  G  N   S++  DID FK  ND 
Sbjct: 453 LRLSAEELKSLAETDGLTGMVNRRTFDEAFARETSGSGRRNMLFSLLMVDIDRFKAYNDT 512

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GHP GD+ +  +S  L      P   V R GGEEF      +S + A I+A    + + 
Sbjct: 513 YGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFVVFLPDTSAKGAMIVAEQFARRLA 572

Query: 205 NSQINISSGPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRVVCFS 259
              I  S      +T S G++     E    P + ++  AD ALY AK  GRNR++  S
Sbjct: 573 QEDIVHSGSEFARVTASIGVSCATGAELRTNP-NRLLTEADAALYEAKTQGRNRILAHS 630


>gi|221068575|ref|ZP_03544680.1| diguanylate cyclase [Comamonas testosteroni KF-1]
 gi|220713598|gb|EED68966.1| diguanylate cyclase [Comamonas testosteroni KF-1]
          Length = 387

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 102/211 (48%), Gaps = 15/211 (7%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           ++ L  F G   ILV   SLV  ++ I LL   + G+   E      RI+Q++  D L+ 
Sbjct: 174 FVNLAGFRG-TVILV---SLVEGAMAIMLLAMSMIGT---ERHRREERIAQIAARDPLTA 226

Query: 112 LLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           L N  A       +    S     +++  DID+FKQ+ND  GH  GD+++  L+D +   
Sbjct: 227 LDNRRALYLRAPQLLKQASPASPGALLLIDIDHFKQVNDLHGHDAGDRLLVSLADLIRGA 286

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGI 224
                   RLGG+EF     G S   A  L  DLR+        + + P  + ++I A +
Sbjct: 287 LPHGSLAARLGGDEFVILLRGISGAAAQALGQDLREAFAQQARTMFATPEPVSLSIGASL 346

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++   E +S  + RAD ALY +K+ GR+R+
Sbjct: 347 FDQPGME-LSHWLKRADDALYASKRKGRDRM 376


>gi|83859367|ref|ZP_00952888.1| GAF sensor diguanylate cyclase [Oceanicaulis alexandrii HTCC2633]
 gi|83852814|gb|EAP90667.1| GAF sensor diguanylate cyclase [Oceanicaulis alexandrii HTCC2633]
          Length = 341

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 79/163 (48%), Gaps = 20/163 (12%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G++    ++S +    ++       L I  FDID FK+IND +GH VGD+VI  + 
Sbjct: 171 DQLTGVMARRHWVSMVKEEIQRAARNSNLLCIALFDIDRFKRINDAYGHAVGDQVIRNVI 230

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
                       +GR+GGEEFA      +  +A + A   R+ IE   +    G  I IT
Sbjct: 231 ATCKHELRAGSKLGRIGGEEFAILFTECALDQAVVAAERCRRAIERLTLTAPDGEDIEIT 290

Query: 220 ISAGIAERCHKEPI-------STIIYRADQALYVAKKSGRNRV 255
            S G+A      P+         +I  AD+ALY AK  GRNRV
Sbjct: 291 ASFGVA------PLFSYALSPDELIELADRALYQAKSGGRNRV 327


>gi|117924947|ref|YP_865564.1| diguanylate cyclase [Magnetococcus sp. MC-1]
 gi|117608703|gb|ABK44158.1| diguanylate cyclase [Magnetococcus sp. MC-1]
          Length = 453

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 80/165 (48%), Gaps = 9/165 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI--------VFFDIDYFKQINDNFGHPVG 151
           ++Q S  D L+ + N   F+ S+  +  ++S+        +  DID+FK IND +GH  G
Sbjct: 287 LAQESGRDPLTKVYNRR-FLDSVVKHEMEVSMRHEIRFGFLLCDIDHFKTINDTYGHDAG 345

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+   +++L        +V R GGEEF       S Q    LA  +R  IE    ++ 
Sbjct: 346 DAVLQQFAERLSSAARVNDYVFRFGGEEFLFVYGDMSPQRLEHLAEKVRHCIEQELFDLP 405

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           SG  IHIT S G A           +   D+ALY AK SGRNR +
Sbjct: 406 SGEKIHITASFGGAVHDGNPNFHKTLKLTDEALYEAKHSGRNRCI 450


>gi|313682667|ref|YP_004060405.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313155527|gb|ADR34205.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 582

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 10/168 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDN 145
           EL  +Y ++ +++  D L+ + N   F S+L          E+ S++ FDID+FK +ND 
Sbjct: 413 ELNEAYEKMEKIALTDTLTEIYNRYYFNSALQNEISRAKRYERFSLLMFDIDHFKVVNDT 472

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH VGD V+  +++++           R+GGEEF      ++ + A  +   +R  IE 
Sbjct: 473 YGHNVGDIVLRMIAERVKSCLRESDIFARVGGEEFMIILPRTTLEMAKEVGERIRTTIE- 531

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             ++   G    ITIS G+      E  + I+ R D ALY AK +GRN
Sbjct: 532 --MHTFDGIG-KITISLGLVTYRDDESFAEIVKRVDTALYKAKNNGRN 576


>gi|260776218|ref|ZP_05885113.1| GGDEF domain protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607441|gb|EEX33706.1| GGDEF domain protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 335

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 116/239 (48%), Gaps = 15/239 (6%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS 86
           F   + IFF+ +IA+ I     F FY+           L+ +    +I+ TI   L +  
Sbjct: 103 FPALYHIFFNRYIASAI----TFAFYLVAISILASYPPLINSTPYTLINFTIPYFLIWAI 158

Query: 87  GSILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQ 141
             + +++      ++S  + +D L+G  N  A + +  S N  L     +V FD+D+FK+
Sbjct: 159 SFVHEDMQTKIKGKLSDAALLDPLTGAKNRLA-LEADTSDNPDLVHNHYLVHFDLDHFKR 217

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +NDN+GH  GD V+  ++  +        F  R+GGEEF        ++ A  +AN LR+
Sbjct: 218 VNDNYGHAAGDTVLKMVAKIVGQQVRQDAFY-RVGGEEFCTIFSAPDKESAFSIANALRE 276

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVC 257
            +  + I+I    ++ +T+S G+ E   +E    I   +   D ALY AK  GRN+V+ 
Sbjct: 277 KLSQTPISIGD-QTLQVTLSGGLCELVVEEGTVRIDETMKITDAALYQAKAQGRNQVIA 334


>gi|271501072|ref|YP_003334097.1| diguanylate cyclase [Dickeya dadantii Ech586]
 gi|270344627|gb|ACZ77392.1| diguanylate cyclase [Dickeya dadantii Ech586]
          Length = 471

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 99/193 (51%), Gaps = 22/193 (11%)

Query: 85  ISGSILKELFISYN---------RISQLSRIDCLSGLLNHSAFISSLGSYNEKL------ 129
           I+ +I   L ++ N         R+ + +  D L+  L+   F  +L ++++ +      
Sbjct: 279 IAATIFSPLMMATNARTIRQLNARLLRQASHDFLTNTLSRYGFTEALSTHDQNIKSQQDA 338

Query: 130 -SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            +I+  DID FK IND+FGH  GD+++  +++ +         V R+GGEEFA      S
Sbjct: 339 VNIMLIDIDNFKNINDSFGHDCGDEILRQVANVIQRTVSAQGLVSRIGGEEFAVVCFNYS 398

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTI---IYRADQA 243
                 LA++LR+ I+++ + + +   + +T+S GI  A+   K  + T+      AD+ 
Sbjct: 399 PPAFYRLADELRQTIQHT-VFLFNQQHVPVTVSIGIAHAQVAGKHLVDTVHELFPLADKN 457

Query: 244 LYVAKKSGRNRVV 256
           LY AK+ GRNR +
Sbjct: 458 LYTAKREGRNRTI 470


>gi|119472331|ref|ZP_01614470.1| sensory box protein [Alteromonadales bacterium TW-7]
 gi|119444954|gb|EAW26251.1| sensory box protein [Alteromonadales bacterium TW-7]
          Length = 670

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 89/159 (55%), Gaps = 8/159 (5%)

Query: 107 DCLSGLLNHSAF---ISSL-GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+ L N   F   I SL  ++N   +++F D+D FK++ND+ GH  GD ++  ++++L
Sbjct: 250 DGLTDLPNRRYFYEKIQSLINTHNTNFALIFIDLDGFKEVNDSLGHDYGDLLLHQVANRL 309

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHITIS 221
                    + RLGG+EF       ++ E AA +AN ++  +  S I +    ++++T S
Sbjct: 310 KACICEQDIIARLGGDEFTLILQNVTDLERAAKVANSVQHALLTS-IQVKK-ETVYVTAS 367

Query: 222 AGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            GI     H + +  ++ RADQA+Y++KK GRNR   FS
Sbjct: 368 IGITLYPEHGKTVEELVKRADQAMYLSKKKGRNRYEFFS 406


>gi|52841291|ref|YP_095090.1| sensory box/GGDEF family protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628402|gb|AAU27143.1| sensory box/GGDEF family [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 506

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 13/180 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           LK+L     ++S+L+  D LS L N   F       I+    Y   L+++  D+D+FK +
Sbjct: 61  LKDLESVQKKLSKLAHFDVLSRLPNRLQFELDLKREIARSKRYGRHLALLSIDLDFFKNV 120

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRK 201
           ND FGH VGD ++  ++ +L         V RLGG+EFA      ++ Q+A ++AN++  
Sbjct: 121 NDRFGHDVGDGLLREVAKRLCSSLREEDCVARLGGDEFAVILTEINNPQQAKLVANNM-- 178

Query: 202 IIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I +  Q  +  G ++ I +S GIA       E I T+   AD ALY AK+ GRN    F+
Sbjct: 179 IQKMGQPFLIKGHTVMIGLSIGIAYFPDAGDEAI-TLRKNADIALYNAKECGRNNCQIFT 237


>gi|226356554|ref|YP_002786294.1| diguanylate cyclase [Deinococcus deserti VCD115]
 gi|226318544|gb|ACO46540.1| putative Diguanylate cyclase (GGDEF domain protein) [Deinococcus
           deserti VCD115]
          Length = 382

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 76/163 (46%), Gaps = 8/163 (4%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+G  N  A    + +L    E+ +++ FDID+FK++ND  GH  GD V+  ++    
Sbjct: 220 DALTGAANRRAAEERLQTLHRAGERYTVILFDIDHFKRVNDEHGHATGDLVLVNVTRCAR 279

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
            +     F  R GGEEF        ++E   L   LR  + N     + GP   +T   G
Sbjct: 280 QLLPDSAFFARWGGEEFLIILPSLPKEEVYELLRTLRAELRNQ----TFGPQKGVTACFG 335

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           +A     E    I+ RAD+A+Y  K  GRN  V FS +   T 
Sbjct: 336 VAHVRPGETPEEIVARADEAMYARKNRGRN-GVEFSTLTPETA 377


>gi|163793349|ref|ZP_02187324.1| Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           domain [alpha proteobacterium BAL199]
 gi|159181151|gb|EDP65666.1| Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           domain [alpha proteobacterium BAL199]
          Length = 461

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 82/169 (48%), Gaps = 17/169 (10%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+GL N  AF       +     ++  +S+V  D+D+FK +ND +GH +GD
Sbjct: 293 LERLATTDPLTGLSNRRAFLMRAREEVERAVRHDRPMSVVMIDVDHFKSVNDRYGHDIGD 352

Query: 153 KVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            V   L D    V G     G    R GGEEF      ++   A  LA  +R   E + +
Sbjct: 353 LV---LQDVAATVQGALRNSGDVAARFGGEEFVLLLPETTVSGAQQLAERIRVAFERTAV 409

Query: 209 NISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               G ++  T S G+          I T++ RAD ALY AK++GRNRV
Sbjct: 410 ETEQG-AVRFTASFGVDVFRSDMDTGIDTVLKRADDALYRAKEAGRNRV 457


>gi|119476912|ref|ZP_01617193.1| hypothetical protein GP2143_10177 [marine gamma proteobacterium
           HTCC2143]
 gi|119449719|gb|EAW30956.1| hypothetical protein GP2143_10177 [marine gamma proteobacterium
           HTCC2143]
          Length = 316

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 79/160 (49%), Gaps = 11/160 (6%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD---KVIA 156
           D L+G  N  A  ++L         + + LS++  DID FK+IND +GH  GD   K +A
Sbjct: 146 DPLTGTGNRMAMENTLTREVAIALRHKQPLSMLVVDIDAFKKINDIYGHAAGDCVLKNVA 205

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
               Q      +     R GGEEF      ++   A ILA  +R+ IE   I      SI
Sbjct: 206 RTLTQCSRDTDSTYRAYRFGGEEFVLLLNNTNRDGAVILAERIREGIE-EMITTCEEKSI 264

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           HIT S G++     E  S +  RAD+ALY AK  GRN+V+
Sbjct: 265 HITASIGVSTLRTGESASQLFDRADKALYTAKDDGRNQVI 304


>gi|95928351|ref|ZP_01311099.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95135622|gb|EAT17273.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 526

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 109/237 (45%), Gaps = 18/237 (7%)

Query: 32  SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL-LLGYISGSIL 90
           S++ S  I   +FI  I + + G   F      L   L   +   T +L  L       +
Sbjct: 288 SLYHSALICLGVFIITIIVLHAGTGFFLQRVKQLQSQLETKVFRRTQALQTLNEKLSQEI 347

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQIN 143
           +E   S   + ++S  D L+ + N   F +        +  EK  +S++  DIDYFK  N
Sbjct: 348 RERKRSQKALQKMSENDMLTNIYNRRKFNTYFSREWDAALREKRVVSLLMIDIDYFKNYN 407

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D++GH  GD  +  ++  L      P  FV R GGEEF      +S   A  LA  LR  
Sbjct: 408 DHYGHLAGDDALIAVAATLKNKLTRPRDFVARYGGEEFVCLLPETSMDAAIYLAEKLRLE 467

Query: 203 IEN----SQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRN 253
           I+      + ++++G   HITIS G+A       +    +I +AD+ALY AK++GRN
Sbjct: 468 IQKLNYVHEYSVAAG---HITISVGVASAIPTAGQAKEDLIDQADKALYRAKEAGRN 521


>gi|254183238|ref|ZP_04889830.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1655]
 gi|184213771|gb|EDU10814.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1655]
          Length = 688

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 4/127 (3%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186
           KL+I+F D+D FK IN + GHP GD+V+   S +L+        V RLGG+EF       
Sbjct: 288 KLAILFMDLDGFKTINGSLGHPAGDEVLKAFSQRLLRCVRDGDIVARLGGDEFVVLLESV 347

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245
           SS+ EAA +A D+ + +   + N   G ++ +T S GIA      +   T++  AD A+Y
Sbjct: 348 SSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGDTADTLLRHADAAMY 405

Query: 246 VAKKSGR 252
            AK+SGR
Sbjct: 406 AAKRSGR 412


>gi|167565960|ref|ZP_02358876.1| putative transmembrane transcriptional sensor regulator
           [Burkholderia oklahomensis EO147]
          Length = 490

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 16/170 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           +++L+  D L+GL N  A   +L     +       L+I+F DID+FK+ ND +GH VGD
Sbjct: 317 LARLAGTDSLTGLHNRRALDETLEREWRRAVCGERPLAILFVDIDHFKRYNDTYGHQVGD 376

Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            V+A +S    Q     G    V R GGEEF      +    A ++A  +R  +    I 
Sbjct: 377 DVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRMGVRMLGIE 434

Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                   +T+S G+A    +      ++ ++  ADQALY AK  GRNRV
Sbjct: 435 HEGSEVGFVTVSVGVAVWQPDGTPAPHVAAVVEAADQALYQAKAGGRNRV 484


>gi|192292680|ref|YP_001993285.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
 gi|192286429|gb|ACF02810.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
          Length = 379

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 85/177 (48%), Gaps = 17/177 (9%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNH-----------SAFISSLGSYNEKLSIVFFDIDYF 139
           +EL  +   + +LS  D L+G+ N            ++ + SLG      S++  D+D+F
Sbjct: 206 QELRQANAALGRLSTTDPLTGVFNRRYLDELIEQETASLVPSLGQ-----SVLMIDVDHF 260

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND+ GH  GD  +  +   +     +   V R GGEEFA    G  E E    A  L
Sbjct: 261 KLFNDHGGHAAGDSCLQQIVTAVRRNLRSCDVVVRYGGEEFAVVLPGLDEAELRETAERL 320

Query: 200 RKIIENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              + + QI     G    +TIS GIA     E ++  I RADQ+LY AK++GRNRV
Sbjct: 321 CHAVSDLQIPHPGLGQGRVVTISVGIAPPVPAETLADAIQRADQSLYRAKRAGRNRV 377


>gi|149194244|ref|ZP_01871341.1| diguanylate cyclase (GGDEF domain) [Caminibacter mediatlanticus
           TB-2]
 gi|149135419|gb|EDM23898.1| diguanylate cyclase (GGDEF domain) [Caminibacter mediatlanticus
           TB-2]
          Length = 536

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 83/166 (50%), Gaps = 14/166 (8%)

Query: 106 IDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+ L N        +  I++    N+K++ V  D+DYFK++ND +GH VGD ++  L
Sbjct: 374 IDPLTKLYNRRFLENILNKIIANADRTNQKVAFVMIDMDYFKKVNDTYGHDVGDMILKQL 433

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINISSGPSIH 217
           ++ L         V R GGEEF        ++E        +RK IE  +  I  G  I 
Sbjct: 434 ANILKSSIRESDIVVRFGGEEFLIILNNIKDKECLFKTLEKIRKKIEEYEFQIPQG-KIK 492

Query: 218 ITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            TIS G +   + C+  P    I  AD ALY AK SGRN++V F +
Sbjct: 493 KTISMGASLYPDTCN-SPWQC-IKNADIALYKAKNSGRNKIVIFEN 536


>gi|119775488|ref|YP_928228.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B]
 gi|119767988|gb|ABM00559.1| GGDEF domain-like protein [Shewanella amazonensis SB2B]
          Length = 288

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 86/159 (54%), Gaps = 7/159 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           + +++  D L+G LN  AF  +  +++        D+D+FK+IND +GH  GD V+  L+
Sbjct: 130 LKKIAATDPLTGALNRRAF-KAPKTHSGSTVFALVDVDHFKRINDTYGHDAGDFVLVELA 188

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +           R GGEEF      +   +A+     LR+++E+S  N+ +G +I+IT
Sbjct: 189 KLISNHIREDDQFFRWGGEEFLLEFRQAELAQASKRMEALRQLVESSHFNL-NGQAINIT 247

Query: 220 ISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRV 255
           ISAG+   C   +   +   +  AD+ALY AK SGRNR+
Sbjct: 248 ISAGLT--CVSPNHGGLEKALKAADEALYRAKDSGRNRI 284


>gi|327482752|gb|AEA86062.1| GGDEF domain-containing protein [Pseudomonas stutzeri DSM 4166]
          Length = 621

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 20/162 (12%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N +A+   L         Y   L +   D+D+FK++ND +GH  GD+V+  + 
Sbjct: 464 DPLTGLPNRAAWNERLDLEFARWQRYGGDLLLAVLDVDHFKRVNDGYGHLAGDRVLKIIG 523

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS------G 213
            +L        F+ R GGEEF    L ++  EA       R+++E  + +I S      G
Sbjct: 524 TELQKRLRKTDFIARFGGEEF-VVLLPNTPYEAG------RQLMETLRESIGSCPFHFKG 576

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             + IT+SAG+      +       RAD+ALY AK SGRNRV
Sbjct: 577 ERVAITLSAGLTAFVIGDTAERAFERADRALYRAKDSGRNRV 618


>gi|300867777|ref|ZP_07112421.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
 gi|300334244|emb|CBN57593.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
          Length = 434

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 18/213 (8%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           G+  +  LE  L++ L++        L LG     + ++L  +   + QL+ +DCL+ + 
Sbjct: 224 GVRKWEQLEINLLQELAM-------QLALGIQQSQLYQQLKEANVELHQLATVDCLTQIA 276

Query: 114 NHSAFISSLG------SYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N   F   L       S+ +K LS++  DID+FK  ND  GH  GD+ +  ++  +  V 
Sbjct: 277 NRRRFDEYLHQEWWRLSHEQKPLSLILCDIDFFKLYNDACGHQAGDRCLKQVAAAIRAVL 336

Query: 167 G-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGI 224
             +   V R GGEEFA     +    A  +A  +R  I++ +I +    P  +IT+S G 
Sbjct: 337 KHSADLVARYGGEEFAIILPNTDAITALSIAETIRSTIKDMRIVHRGLAPDRYITLSLGT 396

Query: 225 AERCHKEPIST--IIYRADQALYVAKKSGRNRV 255
                   IS   +I  AD+ALY AK+ GR+RV
Sbjct: 397 TTVVPGPKISPERLISAADRALYSAKEQGRDRV 429


>gi|255028253|ref|ZP_05300204.1| hypothetical protein LmonL_01599 [Listeria monocytogenes LO28]
          Length = 352

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 15/190 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +LL+ Y    I K   +  N +++ +  D L+ L N   F    G          + LS+
Sbjct: 161 ALLVFYACNYIDKSNLVIQN-LTETAMTDSLTNLPNMRFFTQQFGWIFTKSQKRKKSLSL 219

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ 190
              DID+FK+IND  GH  G+ V+A  S  L    F       R+GGEEFA        +
Sbjct: 220 FIIDIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTE 279

Query: 191 EAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVA 247
           +AA++A+  R+ +E ++   N +SG    +T+S G+A        +  ++  ADQALY A
Sbjct: 280 QAALIADFFREEVERAKFPYNPASG---KVTVSIGVASASSNFSTTESLFEAADQALYQA 336

Query: 248 KKSGRNRVVC 257
           K++GRN++  
Sbjct: 337 KQNGRNQIAV 346


>gi|217972536|ref|YP_002357287.1| diguanylate cyclase [Shewanella baltica OS223]
 gi|217497671|gb|ACK45864.1| diguanylate cyclase [Shewanella baltica OS223]
          Length = 584

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 94/196 (47%), Gaps = 18/196 (9%)

Query: 74  ISITISLLLGYISGSILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGS-------Y 125
           + +T +L L  +  S+  E   SY  ++  ++  D L+G  N       L         +
Sbjct: 382 MPVTDNLELQQMVNSL--ETLKSYAAQVKGMAETDGLTGCYNRRYLDIQLQKELEYARDH 439

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAA 184
           N  L I+ FDID FKQ ND +GH  GD+ +  + +    +   P   + R GGEEF    
Sbjct: 440 NMPLGIILFDIDNFKQFNDRYGHVAGDQCLKNIVNAAKSILKRPTDMLARYGGEEFMIVL 499

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIAERCHKEP----ISTIIYR 239
             S  +E    A  LR+ I + +I     P   I TISAGI   C + P     +++I R
Sbjct: 500 PSSPLEEVYQFAERLREKIISLEIPHEDSPHAGILTISAGIT--CWQLPQQLDANSLINR 557

Query: 240 ADQALYVAKKSGRNRV 255
           AD+ALY AK +GRNR 
Sbjct: 558 ADEALYHAKLTGRNRT 573


>gi|15966552|ref|NP_386905.1| hypothetical protein SMc04015 [Sinorhizobium meliloti 1021]
 gi|15075823|emb|CAC47378.1| Diguanylate cyclase [Sinorhizobium meliloti 1021]
          Length = 307

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 9/162 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHPVGDK 153
           + S++D L+ + N    +  L  +    +        +   DIDYFK IND +GH  GD+
Sbjct: 129 RASQVDELTSVPNRRYTMERLNEFIRNCAENPHMWGCVAIIDIDYFKAINDRYGHHRGDE 188

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+   + Q+          GR+GGEEF      ++  EA ++ + L   I N++  +S+ 
Sbjct: 189 VLLDFARQMQEFVRRSDCFGRIGGEEFMLILPDTTVGEANLILDRLLDKIRNARP-LSNI 247

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           P    T S G+AE    + +  I  RAD+ALY+AK+ GR+RV
Sbjct: 248 PEFFYTCSVGLAEYREGDSVGDIYSRADEALYIAKREGRDRV 289


>gi|300693464|ref|YP_003749437.1| signal transduction ggdef domain protein [Ralstonia solanacearum
           PSI07]
 gi|299075501|emb|CBJ34794.2| putative signal transduction ggdef domain protein [Ralstonia
           solanacearum PSI07]
          Length = 372

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 82/169 (48%), Gaps = 12/169 (7%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           F +  +++  +  D L+G L    F       +     + E L  ++ D+D+FK IND +
Sbjct: 189 FAAETKLADRANTDHLTGRLARQRFFELGAFAVERARHHGEPLCALYLDVDHFKSINDAW 248

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD  +  LSD L  V       GRLGG+EF A  L   +  AA+   D  K    +
Sbjct: 249 GHAAGDDALVALSDALAGVLRPHDLFGRLGGDEF-AVLLPDCDLLAALSVVDRLK----T 303

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + +   P   +T+S G A    ++ ++ ++  AD AL  AK+ GRNRV
Sbjct: 304 AVAVHRHPMGPLTVSVGAAPLRPEQELAHLLADADLALIEAKRQGRNRV 352


>gi|16801092|ref|NP_471360.1| hypothetical protein lin2026 [Listeria innocua Clip11262]
 gi|16414527|emb|CAC97256.1| lin2026 [Listeria innocua Clip11262]
          Length = 375

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 100/201 (49%), Gaps = 15/201 (7%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-- 123
           VE +   ++    +LL+ Y    I K   +  N +++ +  D L+ L N   F       
Sbjct: 171 VEIVEYFLLFFVTALLVFYACNYIDKSNLVIQN-LTETAMTDSLTNLPNMRFFTQQFAWI 229

Query: 124 -----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGG 177
                   + LS+   DID+FK+IND  GH  G+ V+A  S  L    F       R+GG
Sbjct: 230 FNKSQKRKKALSLFIIDIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGG 289

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPIST 235
           EEFA        ++AA++A+ LR  IE ++   N  SG   ++T+S G+A   +    + 
Sbjct: 290 EEFAVLLQNVGTEQAALIADFLRDEIERAKFPYNPVSG---NVTVSIGVASMGYNYRTTE 346

Query: 236 IIYR-ADQALYVAKKSGRNRV 255
            ++  ADQALY AK++GRN++
Sbjct: 347 SLFEAADQALYQAKQNGRNQI 367


>gi|307294112|ref|ZP_07573956.1| diguanylate cyclase [Sphingobium chlorophenolicum L-1]
 gi|306880263|gb|EFN11480.1| diguanylate cyclase [Sphingobium chlorophenolicum L-1]
          Length = 291

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 78/153 (50%), Gaps = 8/153 (5%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+G+ N   F   I +L     +  I   DID+FKQ+ND  GH  GD+++A  + +L 
Sbjct: 131 DALTGIANRRGFLAQIDTLPVTRRRGCIAIIDIDHFKQVNDQLGHEAGDRLLADFAARLS 190

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISA 222
                   VGR GGEEFA     + E EA+     L +I E   Q  + +     +T SA
Sbjct: 191 SQTRRIDIVGRWGGEEFAIFYQDAIEDEASW---SLARIAERMRQEPVGAVHGQPVTFSA 247

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G+       P++  I  AD ALY AK+SGR+R+
Sbjct: 248 GLCA-WRGGPVTDAIDMADDALYHAKRSGRDRI 279


>gi|291085577|ref|ZP_06353394.2| inner membrane protein YeaI [Citrobacter youngae ATCC 29220]
 gi|291071338|gb|EFE09447.1| inner membrane protein YeaI [Citrobacter youngae ATCC 29220]
          Length = 459

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 12/161 (7%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D ++ + N   F  +L +   K  + ++  DID FK+IND +GH  GD+VI  + D +  
Sbjct: 302 DAMTKIYNRKLFYRTLKASLTKGAVCVMVLDIDKFKRINDTYGHQEGDRVIISIVDIINN 361

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-----IT 219
                    R+GGEEFA       + EA ++A  +R+ +EN     ++ P+ +     +T
Sbjct: 362 SIRDTDIFARIGGEEFAILLKCKDKDEAIVVAERIRRNVENG----TTLPNAYDLKEKMT 417

Query: 220 ISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           IS G+       E    ++  AD ALY AK SGRN+V  +S
Sbjct: 418 ISIGVYCSNATDESADKVVSYADAALYDAKNSGRNKVCYYS 458


>gi|170692722|ref|ZP_02883884.1| diguanylate cyclase [Burkholderia graminis C4D1M]
 gi|170142378|gb|EDT10544.1| diguanylate cyclase [Burkholderia graminis C4D1M]
          Length = 607

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 91/190 (47%), Gaps = 25/190 (13%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S +  L +    +  L+  D L+GL N   F+  L           E L+++F D+D FK
Sbjct: 394 SQMDALHVKQRELVHLATHDVLTGLPNRMLFMEKLERAIQDATRRREGLAVLFVDLDRFK 453

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA------I 194
           QIND FGH VGDKV+  ++ +L  V  +   V RLGG+EF     G    EAA      I
Sbjct: 454 QINDQFGHAVGDKVLVAVALRLKQVLHSADVVARLGGDEFIVLIEGPRSAEAAPGIASRI 513

Query: 195 LANDLRKIIENSQINISSGPSIHITI---SAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           +     +I+ + Q  ++ G SI I+     +G AE         ++  AD A+Y AK  G
Sbjct: 514 MTTLNEEIVMDGQ-GMTVGASIGISQFPDDSGTAE--------ELLLNADAAMYAAKSGG 564

Query: 252 RNRVVCFSDI 261
           R   + + D+
Sbjct: 565 RCAYLRYHDV 574


>gi|149193829|ref|ZP_01870927.1| diguanylate cyclase [Caminibacter mediatlanticus TB-2]
 gi|149135782|gb|EDM24260.1| diguanylate cyclase [Caminibacter mediatlanticus TB-2]
          Length = 350

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 12/159 (7%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N   F   I+ L +  E+     S +  DID FK+IND +GH +GD+V+  ++
Sbjct: 195 DPLTKLYNRLYFNNQINYLKNQYERNKKPFSAMLIDIDNFKKINDTYGHHIGDEVLKNVA 254

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +           R GGEEF      + + +A  +A  +RK IE+S I     P   +T
Sbjct: 255 KIIKTTIRKTDIACRYGGEEFIILLPETEKSKAKEIAERIRKKIESS-IQYDDNP---VT 310

Query: 220 ISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ISAG+ E   K + I   I+  D+ LYVAK++G+N+++ 
Sbjct: 311 ISAGVGEFNEKYKTIHHFIHDVDEGLYVAKRTGKNKIIT 349


>gi|15643732|ref|NP_228780.1| hypothetical protein TM0972 [Thermotoga maritima MSB8]
 gi|222100579|ref|YP_002535147.1| Sensory box histidine kinase [Thermotoga neapolitana DSM 4359]
 gi|4981511|gb|AAD36051.1|AE001760_1 conserved hypothetical protein, GGDEF domain [Thermotoga maritima
           MSB8]
 gi|221572969|gb|ACM23781.1| Sensory box histidine kinase [Thermotoga neapolitana DSM 4359]
          Length = 422

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 12/173 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L EL     ++ +++  D L+GL N + F       +      N  LS +  D+D FK
Sbjct: 252 ALLFELHEEKEKLKEIAHRDSLTGLFNRAFFNEWIQDQVRKAQFQNVPLSFIMIDVDDFK 311

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           QIND +GH  GDKV+ F++  +     +  F  R GG+EF      +S+Q+A  +A+ +R
Sbjct: 312 QINDTYGHLTGDKVLKFVARCISDSIRSSDFAVRYGGDEFLVVLYNTSKQQAERVASRIR 371

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           + I N     S+   + + IS G+AE    +     + +AD+ +Y  K+  ++
Sbjct: 372 EKIRN-----SNELGVDVDISYGVAELNPGDNYLKFLQKADEEMYGMKREKKS 419


>gi|103486880|ref|YP_616441.1| diguanylate cyclase [Sphingopyxis alaskensis RB2256]
 gi|98976957|gb|ABF53108.1| diguanylate cyclase [Sphingopyxis alaskensis RB2256]
          Length = 363

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 86/172 (50%), Gaps = 9/172 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQIN 143
           K L  S +R  + + +D L+GL N  AF + L  +        E LS+ F DID FK++N
Sbjct: 184 KALRRSLDRARRDAELDYLTGLPNRRAFENLLDRHYREARAALEPLSVAFCDIDEFKKVN 243

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+VI  ++D L  +      V R GGEEF     G +  EAA   +D R+ +
Sbjct: 244 DTHGHDAGDRVIKAIADTLARISDDKCHVARHGGEEFVMLFRGLTPTEAAQKLDDAREAL 303

Query: 204 ENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            + ++    +  P   IT S G+A+          +  AD ALY AK SGRN
Sbjct: 304 ADRRLINRKTDEPFGQITFSGGVADVFGYGDARAALKAADAALYKAKTSGRN 355


>gi|47096495|ref|ZP_00234087.1| GGDEF domain protein [Listeria monocytogenes str. 1/2a F6854]
 gi|47015148|gb|EAL06089.1| GGDEF domain protein [Listeria monocytogenes str. 1/2a F6854]
          Length = 352

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 15/190 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +LL+ Y    I K   +  N +++ +  D L+ L N   F    G          + LS+
Sbjct: 161 ALLVFYACNYIDKSNLVIQN-LTETAMTDSLTNLPNMRFFTQQFGWIFTKSQKRKKSLSL 219

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ 190
              DID+FK+IND  GH  G+ V+A  S  L    F       R+GGEEFA        +
Sbjct: 220 FIIDIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTE 279

Query: 191 EAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVA 247
           +AA++A+  R+ +E ++   N +SG    +T+S G+A        +  ++  ADQALY A
Sbjct: 280 QAALIADFFREEVERAKFPYNPASG---KVTVSIGVASASSNFSTTESLFEAADQALYQA 336

Query: 248 KKSGRNRVVC 257
           K++GRN++  
Sbjct: 337 KQNGRNQIAV 346


>gi|326388934|ref|ZP_08210516.1| diguanylate cyclase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206534|gb|EGD57369.1| diguanylate cyclase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 360

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 91/181 (50%), Gaps = 9/181 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNE------KLSIVFFDIDY 138
           S S ++ L    +R  + + +D L+GL N  AF +     Y+E       LSI F DID+
Sbjct: 178 SESEVRTLRTRLSRAQRDAEVDYLTGLPNRRAFDAMFNRIYHETRNAVESLSIAFCDIDH 237

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND+ GH  GD+VI  +++ L  +      V R GGEEF     G ++ E     + 
Sbjct: 238 FKAINDSQGHETGDRVIKAVAETLDRLSNQNCHVARHGGEEFVLLFRGMTKHEVREKLDA 297

Query: 199 LRK-IIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +R+   E   +N  +   I  IT S G+A+          +  AD+ALY+AK+ GRN ++
Sbjct: 298 VRENFSERRFVNRRTDEPIGRITFSGGVADVFAYPSPRDAMRAADEALYLAKEQGRNSIM 357

Query: 257 C 257
            
Sbjct: 358 A 358


>gi|251778364|ref|ZP_04821284.1| ggdef/hd domain protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082679|gb|EES48569.1| ggdef/hd domain protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 569

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 9/171 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  +  ID L+ L NH  F  SL         YN+ ++++F DIDYFKQ ND  GH  GD
Sbjct: 190 LEDMINIDGLTELYNHRYFCDSLVENVKSGEEYNKPVAMIFIDIDYFKQYNDINGHQKGD 249

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-IS 211
            V+  +   +           R GGEEF+     ++E++A  +A +LRK IE +      
Sbjct: 250 YVLKKIGKIIKENSRKEDIPARYGGEEFSIILPETNEEKALNIAENLRKSIETAYFEGEE 309

Query: 212 SGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDI 261
           + P+  +T+S G++   +K      +I  AD ALY AK   +NRV  ++ I
Sbjct: 310 NQPNGKVTVSIGVSVYPYKAKNDVELIKSADDALYRAKFFYKNRVEVYTSI 360


>gi|190891271|ref|YP_001977813.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190696550|gb|ACE90635.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 417

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 95/177 (53%), Gaps = 14/177 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148
           S   +  ++  D L+G+LN    +       E+       ++++ FD+D+FK++ND FGH
Sbjct: 208 SERHLRTMTLTDSLTGVLNRRGLLGYFEPSQERAHGEQRQVAVILFDLDHFKRVNDRFGH 267

Query: 149 PVGDKV-IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
             GD V IAF       + G     GR+GGEEFAA A  + + EA  +A  +R   E  +
Sbjct: 268 QAGDAVLIAFARMARQYIPGN--IFGRMGGEEFAAFAAVADQMEAEAIAEAIRT--EFCR 323

Query: 208 INISSGPSI-HITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           + +++G +I  +T+S GIA     +  I  +I  AD+ALY AK +GRN  V F + E
Sbjct: 324 LPVATGEAIVPVTVSIGIALASSIDANIDKLISAADRALYAAKAAGRNCTVTFGETE 380


>gi|146311566|ref|YP_001176640.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Enterobacter sp. 638]
 gi|145318442|gb|ABP60589.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Enterobacter sp. 638]
          Length = 720

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 109/205 (53%), Gaps = 12/205 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------G 123
            +V+++  + LL   +S   L +L    ++  +++R D LS L N  A I  L      G
Sbjct: 266 QIVVLASALILLFILVSSVGLYKLARGESQARRVARTDWLSHLPNRRALIEELERVSLRG 325

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
             + K ++VF D+D FK +ND +GH VGD++I  L+  L         + R+GG+EFA  
Sbjct: 326 DIDVK-TVVFIDLDGFKDVNDIYGHDVGDELIILLAKALRERVPQGGMLARMGGDEFAMT 384

Query: 184 ALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY-RAD 241
             G  S+ +A   AND+   + ++ + I    +IHI+ S G+A     +  S+ ++ RAD
Sbjct: 385 IGGDHSQAQALTFANDVLAFL-DAPVRIGE-RTIHISASIGLASGTLIDCTSSELFRRAD 442

Query: 242 QALYVAKKSGRNRVVCFSDIENNTC 266
            A+Y +K +G+ R+  + D E N+ 
Sbjct: 443 IAMYHSKITGKGRITQY-DAELNSA 466


>gi|117620072|ref|YP_858398.1| GGDEF domain-containing protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561479|gb|ABK38427.1| fog: GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 495

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 16/193 (8%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYN 126
            LV+++  I L     S +   EL  +  R+ +L+  D ++G+LN  AF+  L    +  
Sbjct: 293 GLVLMAYIIQLRRAVASRT--AELIQANARLERLAGTDSMTGILNRRAFLPLLEQRLASG 350

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA----A 182
           +  +++ FD+D FK IND+FGH VGD+V++ +  Q+  V        R+GGEEF      
Sbjct: 351 QASALLLFDLDRFKGINDHFGHGVGDEVLSAMVAQVQRVLPASALFARIGGEEFCISLLV 410

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRA 240
           A + + +Q AA +  ++     NS    +S  ++ I+IS G              ++ +A
Sbjct: 411 ADMATLQQWAARIGREV-----NSHKLPTSAGALGISISTGAVWVPAGGGAEGRRVLLQA 465

Query: 241 DQALYVAKKSGRN 253
           DQ +Y AK  GRN
Sbjct: 466 DQLMYGAKSQGRN 478


>gi|329901535|ref|ZP_08272843.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327549078|gb|EGF33679.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 403

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 94/196 (47%), Gaps = 18/196 (9%)

Query: 80  LLLG--YISGSILKELFISYNR----ISQLSRIDCLSGLLNHSAFIS---SLGSYNE--K 128
           LL G  +I+ S +  L  ++ R    I + +  D L+GL N +A       L +  +  +
Sbjct: 200 LLFGAVFIAASAVTFLAAAHERQRSGIEENALRDGLTGLYNRAALFRIARELDATRDATR 259

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            ++V  DIDYFK IND  GH  GD V+A  +  +  +      V R GGEEF      S 
Sbjct: 260 YAVVMLDIDYFKDINDRHGHSGGDVVLAQAAALIASLARKADAVFRYGGEEFCVLLYDSG 319

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER-------CHKEPISTIIYRAD 241
           +QEA   +  +      S  N+  G  +  T SAG A R         +E  ++++ RAD
Sbjct: 320 QQEAEHFSARVVGAAGRSVANLPDGSIVPFTFSAGYATRSTATTHGAARELFASVLERAD 379

Query: 242 QALYVAKKSGRNRVVC 257
            ALY AK+ GRN+ V 
Sbjct: 380 LALYRAKRGGRNQSVA 395


>gi|307130413|ref|YP_003882429.1| hypothetical protein Dda3937_03022 [Dickeya dadantii 3937]
 gi|306527942|gb|ADM97872.1| hypothetical protein Dda3937_03022 [Dickeya dadantii 3937]
          Length = 466

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 22/193 (11%)

Query: 85  ISGSILKELFISYN---------RISQLSRIDCLSGLLNHSAFISSLGSYNEKL------ 129
           I+ +I   L ++ N         R+ Q +  D L+  L+   F  +L + +  +      
Sbjct: 274 IAATIFSPLMMATNARTIRQLNARLLQQASHDFLTETLSRYGFSEALTAQDRSIKALQNA 333

Query: 130 -SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            +I+  DID+FK IND+FGH  GD+++  ++  +     +   V R+GGEEFA      S
Sbjct: 334 VNIMLIDIDHFKNINDSFGHDCGDEILRQVAGVIKQAVPSQGLVSRIGGEEFAVVCFNYS 393

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-----EPISTIIYRADQA 243
                 LA+ LR+ I+ +    +  P + +T+S GIA          + +  +   AD+ 
Sbjct: 394 PSAFYRLADGLRQTIQQTPFMFNQQP-VPVTVSIGIAHAPTSGKYLVDTVHELFPLADKN 452

Query: 244 LYVAKKSGRNRVV 256
           LY AK+ GRNR +
Sbjct: 453 LYTAKREGRNRTI 465


>gi|218671310|ref|ZP_03520980.1| putative sensory box/GGDEF family protein [Rhizobium etli GR56]
          Length = 357

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 14/178 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  S +R  + +  D L+GLLN   F       I++  +  ++L+ +F D+D FK IND
Sbjct: 97  ELKASEDRNHRQAITDHLTGLLNRQGFEAVLDSKIAAADAAGQELACLFVDLDRFKWIND 156

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKII 203
           N GH  GD+ +  L  +L           RLGG+EFA       +E+ A  +   +  I 
Sbjct: 157 NMGHAAGDRALIELVARLKTHLAPSDEAARLGGDEFAILLPAKDAEKRAKAMCEQIASIF 216

Query: 204 ENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           E         P +H++ S GIA    H    S ++ ++D A+Y  K+ G+N    F +
Sbjct: 217 E-----TPFAPDMHLSASIGIAIYPHHAAAASELLQKSDMAMYAKKRDGKNGAQLFDN 269


>gi|148257974|ref|YP_001242559.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1]
 gi|146410147|gb|ABQ38653.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1]
          Length = 411

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 14/199 (7%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125
           L++I +++SL  G++  ++ +      N ++ L+ +D L+G+ N    +  LG       
Sbjct: 191 LLLIFLSMSLNFGFLLMAVDRL----RNEVADLALLDDLTGVANRRHLMQRLGEECARAE 246

Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
              +  +++  D+D FK INDN GH  GD  +   +            + R GG+EF   
Sbjct: 247 RSGKPFALLVIDLDGFKLINDNHGHAAGDACLQHFTLMAQTRLRPGDMLARTGGDEFCIL 306

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRAD 241
              SS +E A++A  + ++  +      +G  + I +S G+AE  R        ++ RAD
Sbjct: 307 LPSSSLREGAMIARRILQVCRDDA-EACAGADVPIEVSIGVAEWTRDLGAFPDRVMARAD 365

Query: 242 QALYVAKKSGRNRVVCFSD 260
           QALY AKK G+NR   + +
Sbjct: 366 QALYAAKKDGKNRYAVYQN 384


>gi|330825459|ref|YP_004388762.1| diguanylate cyclase [Alicycliphilus denitrificans K601]
 gi|329310831|gb|AEB85246.1| diguanylate cyclase [Alicycliphilus denitrificans K601]
          Length = 334

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 89/189 (47%), Gaps = 23/189 (12%)

Query: 88  SILKELFISYNRISQL---SRIDCLSGLLNHSAFISSL------------GSYNEKLSIV 132
            ++K +F+ Y     L   S  D L+GLLN   F                G+   +  + 
Sbjct: 133 DVVKGVFLVYQNYQNLLDYSERDALTGLLNRKTFEEQFARDAGSTPAADGGADLPRPWLA 192

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK +ND FGH  GD+V+  +++ L     +   + R GGEEF       +  +A
Sbjct: 193 VIDIDHFKSVNDRFGHLYGDEVLILVANVLRAHCKSQDRIFRFGGEEFVVLLRSVTLAQA 252

Query: 193 AILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
             +   LR  ++         P I HIT S G A      P+  ++ RADQALY AK+SG
Sbjct: 253 RQVFERLRAAMQAHAF-----PQIGHITASIGFAASQRGSPVE-VLGRADQALYHAKESG 306

Query: 252 RNRVVCFSD 260
           RNR VCF D
Sbjct: 307 RNR-VCFYD 314


>gi|293392985|ref|ZP_06637302.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291424519|gb|EFE97731.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 358

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 13/179 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDY 138
           + +++  L+   +++S LS +D L+GL N     + L   N+ L+       +V  DID 
Sbjct: 172 TQALVANLYDERDKLSDLSMLDPLTGLYNRRGLENKL---NQLLAPTAGRHFVVLLDIDR 228

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK  NDN+GH +GD+ +  ++  +     +   V R GGEEF       SE  AA LA  
Sbjct: 229 FKAYNDNYGHTMGDQALVQVAAAIRDAVRSRDIVVRYGGEEFLVLLTNVSEAYAAQLAER 288

Query: 199 LRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +R+ +   QI    +   +  +T+SAGI+    +  + + I  AD ALY AK +GRN +
Sbjct: 289 VRQRVLGLQIPHRFNQLATTTVTLSAGISA-LDQLDVKSAIRAADAALYQAKGNGRNTI 346


>gi|238782742|ref|ZP_04626772.1| Predicted diguanylate cyclase [Yersinia bercovieri ATCC 43970]
 gi|238716402|gb|EEQ08384.1| Predicted diguanylate cyclase [Yersinia bercovieri ATCC 43970]
          Length = 366

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 114/247 (46%), Gaps = 24/247 (9%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI----- 85
            S+F   FI+T+    N   F +   P   L  I +++    I  IT +L+L  I     
Sbjct: 110 LSLFTIFFISTIALSDNFIAFCLHTAP-AALTVIFLDDFQ-NIFRITFTLMLPLIGFSLH 167

Query: 86  ----------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----I 131
                     +  ++  L+    + S LS ID L+ L N     + L +   +      +
Sbjct: 168 HLMSRRSDDFTRKLVAHLYNEREKFSDLSMIDPLTSLYNRRGLENKLETLLAQSPGNHYV 227

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK  NDN+GH +GD+ +  ++  +     +   V R GGEEF       SE+ 
Sbjct: 228 LLLDIDHFKAYNDNYGHTMGDQALVRVAAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEY 287

Query: 192 AAILANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           A+ LA  +R+ +    I    +   S  +T+SAGI+       +++ +  AD+ALY AKK
Sbjct: 288 ASQLAERVRQRVLGLDIPHVFNHKVSTTVTLSAGISP-LQAYDLASSLKAADEALYRAKK 346

Query: 250 SGRNRVV 256
            GRN+V 
Sbjct: 347 DGRNKVA 353


>gi|192360000|ref|YP_001983306.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Cellvibrio japonicus
            Ueda107]
 gi|190686165|gb|ACE83843.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Cellvibrio japonicus
            Ueda107]
          Length = 1082

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 62/199 (31%), Positives = 93/199 (46%), Gaps = 35/199 (17%)

Query: 91   KELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEK------------------- 128
            +EL  +Y ++   S  D L+GL N    S FI++  +  E+                   
Sbjct: 844  RELEEAYRKLEAASLSDPLTGLKNRRFLSQFIAADVAMAERAYQNWLADRATGVEGPAPT 903

Query: 129  ---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
               L  +  D+D+FK +NDN GH  GDKV+  LS  L        ++ R GGEEF     
Sbjct: 904  DADLIFMLLDMDHFKSVNDNHGHGAGDKVLEQLSRLLETAVRESDYLVRWGGEEFLIVVR 963

Query: 186  GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH----KEPIS----TII 237
             ++  EA  +A  +R+ + N +     G  +  + S G A  C+    + P +     ++
Sbjct: 964  FANRTEAPEMAERIRQAVANYEFKPGDGQVLRRSCSMGFA--CYPFYPEAPTALRWEQVV 1021

Query: 238  YRADQALYVAKKSGRNRVV 256
              AD+ALY AKKSGRNRVV
Sbjct: 1022 DTADRALYAAKKSGRNRVV 1040


>gi|224500262|ref|ZP_03668611.1| hypothetical protein LmonF1_11524 [Listeria monocytogenes Finland
           1988]
 gi|254899391|ref|ZP_05259315.1| hypothetical protein LmonJ_06244 [Listeria monocytogenes J0161]
 gi|254912470|ref|ZP_05262482.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936797|ref|ZP_05268494.1| GGDEF domain-containing protein [Listeria monocytogenes F6900]
 gi|258609392|gb|EEW22000.1| GGDEF domain-containing protein [Listeria monocytogenes F6900]
 gi|293590452|gb|EFF98786.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 375

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 15/190 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +LL+ Y    I K   +  N +++ +  D L+ L N   F    G          + LS+
Sbjct: 184 ALLVFYACNYIDKSNLVIQN-LTETAMTDSLTNLPNMRFFTQQFGWIFTKSQKRKKSLSL 242

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ 190
              DID+FK+IND  GH  G+ V+A  S  L    F       R+GGEEFA        +
Sbjct: 243 FIIDIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTE 302

Query: 191 EAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVA 247
           +AA++A+  R+ +E ++   N +SG    +T+S G+A        +  ++  ADQALY A
Sbjct: 303 QAALIADFFREEVERAKFPYNPASG---KVTVSIGVASASSNFSTTESLFEAADQALYQA 359

Query: 248 KKSGRNRVVC 257
           K++GRN++  
Sbjct: 360 KQNGRNQIAV 369


>gi|120609444|ref|YP_969122.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
 gi|120587908|gb|ABM31348.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
          Length = 432

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 12/204 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ 118
           +V  +SLV   + I LL   ++G+   E      R++Q++  D L+ L N  A       
Sbjct: 227 VVIQVSLVEGVMAIMLLAMSMTGT---ERHRREERMAQIAARDPLTALDNRRALYLRAPA 283

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           +    S     +++  DID FKQ+ND  GH  GD+++  LSD +           RLGG+
Sbjct: 284 LLRQASPASPGALLLMDIDNFKQVNDLHGHDAGDRLLITLSDLIRSTLPIGALAARLGGD 343

Query: 179 EFAAAALGSSEQEAAILANDLRKII-ENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EF      +S   A  L  +LR+   E +    ++   + ++I A + ++   E +S  +
Sbjct: 344 EFVILLRDASPSAAQALGRELREAFSEQASTMFATPEPVSLSIGATLFDQPDAE-LSHWL 402

Query: 238 YRADQALYVAKKSGRNRV-VCFSD 260
            RAD+ALY +K+ GR+R+ V  SD
Sbjct: 403 KRADEALYASKRQGRDRMEVVLSD 426


>gi|125974674|ref|YP_001038584.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum ATCC
           27405]
 gi|256004128|ref|ZP_05429112.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum DSM
           2360]
 gi|125714899|gb|ABN53391.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum ATCC
           27405]
 gi|255991876|gb|EEU01974.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum DSM
           2360]
 gi|316941798|gb|ADU75832.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum DSM
           1313]
          Length = 415

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 6/142 (4%)

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
           G  N+KLS++  DID FK+IND +GH  GD V+   +  ++        V R GGEEF A
Sbjct: 272 GFSNQKLSVIMMDIDNFKRINDTYGHNAGDAVLVTFARVILRCLRQTDLVARYGGEEFIA 331

Query: 183 AALGSSEQEAAILANDLRKIIENS---QINISSGPSIHITISAGIAE-RCHKEPISTIIY 238
               S  + A  +A  +R+ I      +IN    P  +I+ S G++    H +  + +I 
Sbjct: 332 ILPSSDTKNAYDIAERIRESIAAEPMPKINDVQLP--NISCSFGVSTYPTHAKNKNDLIK 389

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD ALY AK++G+NRV+ +S+
Sbjct: 390 AADIALYKAKQAGKNRVITYSE 411


>gi|302187590|ref|ZP_07264263.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 530

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 86/172 (50%), Gaps = 15/172 (8%)

Query: 107 DCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L      +  E+  LS++  D D+FK+ ND++GH  GD+ +  L+
Sbjct: 336 DKLTGLANRRRFDQFLEVEFKRARRERSLLSLILIDADHFKRYNDHYGHLAGDECLIALA 395

Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +      P  V  R GGEE A    G+ E  A  +A  + + I + QI   + P   +
Sbjct: 396 RVVEQFIRRPSDVAARYGGEEIAVVLPGTDESNARQVAEKILQAIRDEQIEHPASPFGIV 455

Query: 219 TISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           TIS G+A     +R   E   ++I  AD+ALY AK  GRNRV   S+I   T
Sbjct: 456 TISLGVATFMGTDRQLDE--RSLIELADRALYAAKSQGRNRVNVASEIATGT 505


>gi|239995986|ref|ZP_04716510.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Alteromonas macleodii ATCC 27126]
          Length = 353

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 69/128 (53%), Gaps = 1/128 (0%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS V  DID+FK IND +GH +GD+V+  ++  +     T   V R GGEEF      ++
Sbjct: 226 LSAVVVDIDHFKTINDTYGHDIGDEVLIHITRLMKEAVRTTDVVARTGGEEFLVLFPHAT 285

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
             +A  LA  +RK+IE +   +    +  IT S G+A       +   + +AD  LY AK
Sbjct: 286 LSQAVKLAEKMRKVIEANPF-VEGDVNHSITASFGVATALTDTNLHACLKQADDNLYKAK 344

Query: 249 KSGRNRVV 256
            +GRNRVV
Sbjct: 345 NAGRNRVV 352


>gi|218675362|ref|ZP_03525031.1| hypothetical protein RetlG_30229 [Rhizobium etli GR56]
          Length = 614

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 83/180 (46%), Gaps = 15/180 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDN 145
           L +S  ++  L+  D L+G++N  AF  S           N   S++  DID FK  ND 
Sbjct: 426 LRLSAEQLRNLAETDGLTGIVNRRAFDESFARETAGSARKNTPFSLLMVDIDRFKAYNDT 485

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GHP GD+ +  +S  L      P   V R GGEEF      +S + A I+A    + + 
Sbjct: 486 YGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFVVFLPDTSAKGAMIVAEQFARRLA 545

Query: 205 NSQINISSGPSIHITISAGIAERCH-----KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              I  S      +T S GI+  C      +   + ++  AD ALY AK  GRNR++  S
Sbjct: 546 KENILHSGSEFGRVTASIGIS--CATGATLRASPNRLLAEADAALYEAKTQGRNRILAHS 603


>gi|197104776|ref|YP_002130153.1| stalked-cell differentiation controlling protein [Phenylobacterium
           zucineum HLK1]
 gi|196478196|gb|ACG77724.1| stalked-cell differentiation controlling protein [Phenylobacterium
           zucineum HLK1]
          Length = 454

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 90/170 (52%), Gaps = 15/170 (8%)

Query: 102 QLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL N         A +    +  + ++++  DID+FK+IND+FGH VGD+V
Sbjct: 287 ELAVTDQLTGLHNRRYMQGQLEALMRRAAAGGDPVALLVIDIDHFKRINDSFGHDVGDEV 346

Query: 155 IAFLSDQL---VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           +   + +L   V     P+   R GGEEF      +S ++A  +A  +R  +  S   + 
Sbjct: 347 LREFAVRLASNVRAIDLPV---RHGGEEFVVVMPDTSLEDARRIAERIRLHVAGSPFRVM 403

Query: 212 SGPS-IHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFS 259
            G   + +TIS G+A     E  S  ++ RAD+A+Y AK  GRNRV+  +
Sbjct: 404 GGEELLSVTISIGVAAGAGGEDSSQALLKRADEAVYEAKSRGRNRVIARA 453


>gi|171057390|ref|YP_001789739.1| diguanylate cyclase [Leptothrix cholodnii SP-6]
 gi|170774835|gb|ACB32974.1| diguanylate cyclase [Leptothrix cholodnii SP-6]
          Length = 226

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 79/167 (47%), Gaps = 19/167 (11%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+GL N   F       I  +    E   ++  DID+FK IND  GH VGD VI
Sbjct: 31  LSSRDPLTGLPNRRQFEAALEQEIDRVARSGEPAMLLMLDIDHFKHINDTHGHAVGDLVI 90

Query: 156 ----AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
               A L D +      PM  V R+GGEEFAA            +A  +R+ IE  +I I
Sbjct: 91  QAVGAALEDSV-----RPMDSVARIGGEEFAAVLPSCPAAFGHTVAERVRRNIEALRIAI 145

Query: 211 SSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + G  + +T S G   A +  +      + RADQ LY AK  GRNR 
Sbjct: 146 APGQIVTVTTSVGGAFAPQWVRSSGPLWLERADQQLYRAKSEGRNRT 192


>gi|148378360|ref|YP_001252901.1| signaling protein [Clostridium botulinum A str. ATCC 3502]
 gi|148287844|emb|CAL81910.1| putative signaling protein [Clostridium botulinum A str. ATCC 3502]
          Length = 895

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 14/170 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +I  L+  D L+GL N    I ++        NEK +++F D+D+FK IND  GH VGD 
Sbjct: 470 KILGLAYYDSLTGLSNRKKIIETINKTINNYENEKFAVLFIDLDHFKSINDTLGHDVGDY 529

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQIN 209
           V+  +S +  ++      +GRLGG+EF       ++  +E+ A  +   L   I+  + +
Sbjct: 530 VLEKVSARFKMLLSPKHKIGRLGGDEFIIVQNITSISDAEKLACKICTTLNHSIKYKEDD 589

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  G SI I+I     +       ST++  AD A+Y AKK+G  +   +S
Sbjct: 590 LFIGASIGISIYPEDGKDT-----STLMKNADAAMYAAKKNGGYKYEVYS 634


>gi|78047033|ref|YP_363208.1| putative signal transduction protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035463|emb|CAJ23108.1| putative signal transduction protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 507

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 87/180 (48%), Gaps = 18/180 (10%)

Query: 96  SYNRISQLSRI---DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145
           S NR+  L+     D L+G+ N     ++L    E        LSI F D+D FK++ND 
Sbjct: 317 SENRMRHLAEQASRDALTGVFNRHQLGTALTHEFELASRQGWPLSIAFIDLDEFKRVNDA 376

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKII 203
            GH VGD+V+   +  L  +  T   V R GGEEF    L ++  +AA++  +  L +  
Sbjct: 377 HGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEF-LVILPNTPADAALMVIERILAETA 435

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRVVCFS 259
                 +  GP +HIT SAG+A     E     I  ++  AD  LY +K  GRNRV  + 
Sbjct: 436 RTPMAQLKGGP-LHITFSAGLATHGGAERQFDSIDHLLQAADSTLYRSKHRGRNRVTAYD 494


>gi|304398743|ref|ZP_07380614.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pantoea sp. aB]
 gi|304353690|gb|EFM18066.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pantoea sp. aB]
          Length = 709

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 91/174 (52%), Gaps = 10/174 (5%)

Query: 87  GSILKELFISYN---RISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFK 140
           G I++++   Y    R+ +L+ ID L+ L + SAF+  +G   +     +++  D+D FK
Sbjct: 258 GMIIRDVTARYESEARLCELASIDMLTRLASRSAFMDQVGQLTKAAVPYTLLMTDLDGFK 317

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND  GH  GD ++  +++Q+  V  + +   RLGG+EF     G S  EAAI A  L 
Sbjct: 318 EVNDTLGHAAGDALLCHVAEQIRAVCASAVTAARLGGDEFVILLAGGS-AEAAITAERLI 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
             ++ +       P + +  S GIA    H    S+++  AD ALY AK SG+ 
Sbjct: 377 AAVQ-TPFRYHDSPVV-VGASTGIASYPEHGRDPSSVMSAADLALYRAKASGKG 428


>gi|317130908|ref|YP_004097190.1| diguanylate cyclase/phosphodiesterase [Bacillus cellulosilyticus
           DSM 2522]
 gi|315475856|gb|ADU32459.1| diguanylate cyclase/phosphodiesterase [Bacillus cellulosilyticus
           DSM 2522]
          Length = 886

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 94/174 (54%), Gaps = 11/174 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEK---LSIVFFDIDYFKQINDNFG 147
           S  ++ +L+  D L+GL N   F   L S      N+K   ++++F D++ FKQIND  G
Sbjct: 454 SEEKLQKLAYYDMLTGLPNRQHFQKYLESLLQSEANKKAPTIAVMFVDLNQFKQINDTLG 513

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD+++  +S++L+ +    + V RLGG+EF      + ++E       L+++   ++
Sbjct: 514 HKVGDELLKLVSNKLMKLEKEKIKVFRLGGDEFVIVLTEADKKEVKRFGGKLQRLF--AE 571

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             I +  S+++T S G++      + +  ++  AD A+Y AK+ GRN +  F  
Sbjct: 572 PIILNNMSLYVTASFGVSMYPKDGDTLDRLVRFADMAMYNAKEKGRNYIQFFDQ 625


>gi|262171860|ref|ZP_06039538.1| GGDEF family protein [Vibrio mimicus MB-451]
 gi|261892936|gb|EEY38922.1| GGDEF family protein [Vibrio mimicus MB-451]
          Length = 489

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 9/161 (5%)

Query: 101 SQLSRIDCLSGLLNHSAFISSL--GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ++L+  D ++GLLN       L    +N+ L+I   DID FKQIND +GH +GD+VI ++
Sbjct: 332 AELAARDPMTGLLNRRGMEGFLQGKRHNQYLAIAVLDIDDFKQINDTYGHDMGDRVICYI 391

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            +Q+     +   V R GGEEF         EQ   I+      +  +S   +  G    
Sbjct: 392 GEQIENHIRSSDAVARFGGEEFVVYVTAKEQEQIHRIMHRIFDAVCHDSTQILDQG---- 447

Query: 218 ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            T+S G+   E   +     +   ADQ LYVAK SG+N++V
Sbjct: 448 FTVSGGVEIIESKTELTFEELFKAADQKLYVAKSSGKNQLV 488


>gi|261212456|ref|ZP_05926741.1| sensory box/GGDEF family protein [Vibrio sp. RC341]
 gi|260838387|gb|EEX65043.1| sensory box/GGDEF family protein [Vibrio sp. RC341]
          Length = 607

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 86/175 (49%), Gaps = 20/175 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDIDYFKQINDNFGH 148
           NR+ +LS  D L+ L N   F  ++     K+          +   DID+FK+IND  GH
Sbjct: 438 NRLRELSEKDALTDLWNRRKFDQAIHLECAKIRRYPDIAQACLAIVDIDHFKKINDKLGH 497

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+  +++ +        FV R+GGEEFA     +S +EA  + N +R       +
Sbjct: 498 SEGDHVLRSVANGIQEQLRESDFVARIGGEEFAIIFPHTSVEEAERVLNRVR-------L 550

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSDIE 262
            I+S     +T+S G+ + C    I    Y RAD ALY +K SGRN++   +  E
Sbjct: 551 YIASIHQQKVTLSGGVTDLC---SIPDQSYKRADLALYESKSSGRNQIAVLTAAE 602


>gi|171849031|pdb|3BRE|A Chain A, Crystal Structure Of P.Aeruginosa Pa3702
 gi|171849032|pdb|3BRE|B Chain B, Crystal Structure Of P.Aeruginosa Pa3702
          Length = 358

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L   D L+GL N   F   L            +LS++  D+DYFK  ND FGH  GD
Sbjct: 167 LQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGD 226

Query: 153 KVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  ++  +      +     R GGEEFA    G+S   A +LA  +R+ +E+ QI + 
Sbjct: 227 EALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHD 286

Query: 211 SSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              P  H+T+S G++        +    +I  ADQALY AK +GRN+V
Sbjct: 287 QPRPGSHLTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGRNQV 334


>gi|123442661|ref|YP_001006638.1| putative inner membrane protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089622|emb|CAL12472.1| putative inner membrane protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 371

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 3/164 (1%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGD 152
           +Y  +   + ID L+ L N S+    L S N   +   ++  D+D+FK +ND +GH  GD
Sbjct: 186 AYFAMKDRANIDKLTQLNNRSSADYRLNSINHNRQACGLLILDLDHFKSVNDTYGHDGGD 245

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++  +   L+       FVGR GGEEF         Q    +A  +R+ +E+  + +  
Sbjct: 246 ILLTEVGKLLMTAVRDEDFVGRYGGEEFIIITHSHDPQAIKAVAERIRQRVESLDVQLPD 305

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  +  TIS G +       +   +   D+ALY AK  GRN+VV
Sbjct: 306 GRKLKATISIGASLFLPGMSMLKALKMTDEALYQAKNQGRNQVV 349


>gi|116249205|ref|YP_765046.1| GGDEF/EAL domain-containing protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115253855|emb|CAK12250.1| putative transmembrane GGDEF/EAL domain protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 665

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
           +LS  D L+G+ N  A    L     ++ ++    S+   D+D+FK+ ND +GH  GD+ 
Sbjct: 242 ELSHTDYLTGISNRRALDRRLDECWAAWKDERRDFSVFLIDVDFFKRFNDRYGHQEGDRC 301

Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  +++ L  VV  +   +GR GGEEF      +  + A  LA  +R  +E+  I     
Sbjct: 302 LTVIANALKAVVESSDGMIGRYGGEEFIVVMPAALPKVAMTLAEKIRMEVESLAIAHDER 361

Query: 214 PS--IHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           P     +T+S G+A    K  E +  I+  AD ALY AK SGRN +  F  +
Sbjct: 362 PDDMSTVTVSIGVAFTREKVGEKVERIVREADLALYNAKASGRNCIRSFDPL 413


>gi|71734369|ref|YP_275090.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554922|gb|AAZ34133.1| GGDEF domain protein [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 604

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 15/172 (8%)

Query: 107 DCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L      +  E+  LS++  D D+FK+ ND++GH  GD+ +  L+
Sbjct: 413 DKLTGLANRRRFDQFLEVEFKRARRERSLLSLILIDADHFKRYNDHYGHLAGDECLVALA 472

Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +      P  V  R GGEE A    G+ E  A  +A ++ + I + QI   + P   +
Sbjct: 473 RVVEQCIRRPGDVAARYGGEEIAVVLPGTDESSARQVAENILQAIRDEQIEHPASPFGIV 532

Query: 219 TISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           T+S G+A     +R   +   ++I  AD+ALY AK  GRNRV   S+I  +T
Sbjct: 533 TVSLGVATFVGTDRQLDQ--RSLIELADRALYAAKSQGRNRVNVASEIATST 582


>gi|310642768|ref|YP_003947526.1| diguanylate cyclase with gaf sensor [Paenibacillus polymyxa SC2]
 gi|309247718|gb|ADO57285.1| Diguanylate cyclase with GAF sensor [Paenibacillus polymyxa SC2]
          Length = 661

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 13/166 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDK 153
           +  + +L+ +D L+GL         +  + EK    S++  DID FKQ+ND +GH  GD+
Sbjct: 496 HAEVRRLANMDMLTGLYVRHYVDRIIQEHQEKDFCGSLILVDIDQFKQVNDTYGHQTGDE 555

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  +S+ +           R GGEE A        Q+A   A  +R  +++      + 
Sbjct: 556 ILKSVSNIVRSATRDEDVCARWGGEELAIYLPQLGVQQALGYAEKIRSCVQH-----ETN 610

Query: 214 PSIHITISAGIAE-RCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
           P   +T+S GIAE     E IS  ++ YRAD ALY AK  GRNR+V
Sbjct: 611 P--QVTVSCGIAEWNWLDEQISIESLFYRADMALYEAKNEGRNRIV 654


>gi|281418855|ref|ZP_06249874.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum JW20]
 gi|281407939|gb|EFB38198.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum JW20]
          Length = 415

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 6/142 (4%)

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
           G  N+KLS++  DID FK+IND +GH  GD V+   +  ++        V R GGEEF A
Sbjct: 272 GFSNQKLSVIMMDIDNFKRINDTYGHNAGDAVLVTFARVILRCLRQTDLVARYGGEEFIA 331

Query: 183 AALGSSEQEAAILANDLRKIIENS---QINISSGPSIHITISAGIAE-RCHKEPISTIIY 238
               S  + A  +A  +R+ I      +IN    P  +I+ S G++    H +  + +I 
Sbjct: 332 ILPSSDTKNAYDIAERIRESIAAEPMPKINDVQLP--NISCSFGVSTYPTHAKNKNDLIK 389

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD ALY AK++G+NRV+ +S+
Sbjct: 390 AADIALYKAKQAGKNRVITYSE 411


>gi|24372430|ref|NP_716472.1| GGDEF domain-containing protein [Shewanella oneidensis MR-1]
 gi|24346407|gb|AAN53917.1|AE015529_1 GGDEF domain protein [Shewanella oneidensis MR-1]
          Length = 489

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 75/141 (53%), Gaps = 8/141 (5%)

Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           H + ISS G+    + +V  DID+FK+IND  GH VGD ++  LS  L         V R
Sbjct: 350 HRSEISSEGA----ICLVMLDIDFFKEINDTLGHAVGDNILMELSGVLQHCVRETDVVAR 405

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
            GGEEF      +S      L   +   I++ +    SG ++ +T S GIA+  + EP+ 
Sbjct: 406 WGGEEFVILCHQTSIDLVKTLCQRIAAAIKDYRF---SG-NVQLTCSFGIAKLVNNEPMQ 461

Query: 235 TIIYRADQALYVAKKSGRNRV 255
           +   RAD+ALY AK  GRN++
Sbjct: 462 SCFERADKALYQAKALGRNQI 482


>gi|88800989|ref|ZP_01116539.1| GGDEF domain protein [Reinekea sp. MED297]
 gi|88776256|gb|EAR07481.1| GGDEF domain protein [Reinekea sp. MED297]
          Length = 402

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 24/172 (13%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+ +D L+G+    A    L     + +I   D+D+FK  ND +GH VGD+V+  ++ ++
Sbjct: 229 LAYMDELTGIPGRKALQKQLAGLGRRYAIAMLDVDHFKAFNDTYGHDVGDQVLRLVAARV 288

Query: 163 -VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE----------------- 204
             V  G   +  R GGEEF     G + Q+A      +R+ I                  
Sbjct: 289 RAVSHGGRAY--RYGGEEFTIVFPGKTAQQAVPALESVRESIAGYTLQLRQEDRPDDDKV 346

Query: 205 -NSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
             +Q     G  +++TIS G+AE      EP   ++  ADQ LY AKK+GRN
Sbjct: 347 GRNQRGKPKGRGVNVTISIGVAEPADDLTEP-KAVMKAADQLLYKAKKAGRN 397


>gi|238797532|ref|ZP_04641030.1| Diguanylate cyclase [Yersinia mollaretii ATCC 43969]
 gi|238718673|gb|EEQ10491.1| Diguanylate cyclase [Yersinia mollaretii ATCC 43969]
          Length = 397

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 94/181 (51%), Gaps = 18/181 (9%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQIND 144
           + L   ++ ++  +  D L+GL N + F   L         +E  +++F D D FK+IND
Sbjct: 209 EHLTQEHDSLAHRAAHDSLTGLANRAFFEGRLSRTLSDCKPSEHAAVLFLDGDRFKEIND 268

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKI 202
           N+GH  GD V+  ++D++  +      V RLGG+EFA   A +  ++    I +N    I
Sbjct: 269 NYGHAAGDVVLTTIADRIRALLRETDLVARLGGDEFAVLLAPIHKTDDVLLIASN----I 324

Query: 203 IE--NSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKK---SGRNRVV 256
           IE  +  I ++ G  I  ++S GIA    H +    ++ RAD+A+Y AKK   SG  RV+
Sbjct: 325 IESMSQPIVLADGREITTSLSIGIAIYPDHAQTPEALLQRADEAMYQAKKNIQSGGGRVI 384

Query: 257 C 257
            
Sbjct: 385 A 385


>gi|89055410|ref|YP_510861.1| diguanylate cyclase/phosphodiesterase [Jannaschia sp. CCS1]
 gi|88864959|gb|ABD55836.1| diguanylate cyclase/phosphodiesterase [Jannaschia sp. CCS1]
          Length = 664

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 95/185 (51%), Gaps = 25/185 (13%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHS---AFISSLGSYNE-KLSIVFFDIDYFKQINDN 145
           + EL  + ++   L+R D L+G  N S    F++ L      ++++++FDID FKQIND 
Sbjct: 231 VSELKRARDQARYLARRDQLTGCYNRSHLTRFVAELADAQATQVTLLYFDIDRFKQINDT 290

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF--------AAAALGSSEQ--EAAIL 195
           +GH +GD+V+  ++D+ + +      V RLGG+EF        AA+ L   E+  +A   
Sbjct: 291 YGHVIGDRVLMAMADRAIQLTQDTDAVVRLGGDEFVVVLGATDAASRLERVERFFKALSA 350

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             D   I  NS++++  G S+                +   +  AD ALY+AK +GRNR 
Sbjct: 351 PTDFASITVNSRVSL--GVSVFDPTQTD---------VDVALRHADIALYLAKNTGRNRY 399

Query: 256 VCFSD 260
           V + D
Sbjct: 400 VVYDD 404


>gi|33601603|ref|NP_889163.1| hypothetical protein BB2626 [Bordetella bronchiseptica RB50]
 gi|33576040|emb|CAE33119.1| probable membrane protein [Bordetella bronchiseptica RB50]
          Length = 385

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 109/246 (44%), Gaps = 35/246 (14%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL--------------SLVIISI 76
           +S +F+   ATV  + +        T  YGL+    + L               LV+ S+
Sbjct: 149 YSYWFAGVTATVAALGHALR-----TAVYGLQIEQTQGLLQSSVWNVAFLAIGVLVMPSM 203

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129
           T+ +++  I   +L E     N+       D L+GLL+  A+        +        L
Sbjct: 204 TLGMIM-MIHDRMLAEREREANQ-------DFLTGLLSRKAWWREGERLCARALRTGRPL 255

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID FKQ+ND  GH  GD V+         +  +   +GRLGGEEF A    +  
Sbjct: 256 TLLALDIDRFKQVNDQHGHAAGDVVLRHFGSLATALLRSGDVIGRLGGEEFVALLPDTDG 315

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
                +A  L   +  +  +   G ++  T S G+A+    + +  ++ RAD ALY AK+
Sbjct: 316 DTGVSVAERLLASVRATPCS-HGGKALTYTFSGGVAQYRAGDTLPVLVERADAALYAAKQ 374

Query: 250 SGRNRV 255
           +GR+R+
Sbjct: 375 AGRDRI 380


>gi|71900820|ref|ZP_00682938.1| GGDEF [Xylella fastidiosa Ann-1]
 gi|71729390|gb|EAO31503.1| GGDEF [Xylella fastidiosa Ann-1]
          Length = 333

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 20/163 (12%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+G L   A        I         LS+ F DID+FK+IND +GH  GD  +  +
Sbjct: 174 VDGLTGALTRVAIERRLERDIDDARQMGTPLSVAFIDIDHFKRINDEYGHAAGDACLRQV 233

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP---- 214
             ++         +GR GG+E  A   G+    A       R++ E  ++ +SS P    
Sbjct: 234 VQRVRGWLRASDALGRHGGDELIAILPGADLAAA-------RRVAEGVRVAVSSQPFQFE 286

Query: 215 --SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              +  T+S G+A     E I  ++ RAD  LY +K +GR+RV
Sbjct: 287 CTRLRCTLSLGVASWLPDESIEALLQRADNGLYASKAAGRDRV 329


>gi|332307897|ref|YP_004435748.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175226|gb|AEE24480.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 563

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 11/173 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGD 152
           + QLS +D L+G+ N  A    L      +  EK  LS++  D+D+FK  NDN+GH  GD
Sbjct: 387 LQQLSLLDGLTGIPNRRALDERLEHELKLATREKWPLSLLMVDVDFFKPFNDNYGHVAGD 446

Query: 153 KVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           + +  ++  L  V   +  F  R GGEEF      + +  A  +A+ L   + N+ +   
Sbjct: 447 EALVSIAQILESVAKRSGDFAARYGGEEFVFILPNTDQTGARSVASTLLNSVRNANLEHK 506

Query: 212 SGPSI-HITISAGIAERCHKEPISTIIYR--ADQALYVAKKSGRNRVVCFSDI 261
             P+  HITIS GIA     E       +  AD ALY AK++GR++ + + DI
Sbjct: 507 YNPNTDHITISVGIATGLPGEAKDADYLQRLADHALYAAKQNGRDQAIHYLDI 559


>gi|331018266|gb|EGH98322.1| GGDEF domain protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 355

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 117/244 (47%), Gaps = 28/244 (11%)

Query: 24  PHTFMIYF-SIFFSIFIATVIFIANIFLFYIGLTPFYGLE-----YILVENLSLVIISIT 77
           P   MI   S    ++    +F++   L +I L+P  G++     Y+ +  +   + SI 
Sbjct: 99  PIALMIILCSTLLVVYTRDYLFVS--VLSWIILSPAQGIDTDSAAYVFM--MLFFVSSIA 154

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------I 131
           + ++L +     L+++    +R  +LS  D L+ +LN  A + +L   +E+L+       
Sbjct: 155 LGVVLNHTYTRTLRKVLTLESRFRELSLTDDLTDILNRRALMLAL---DEQLANNSGGYF 211

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID FK IND FGH  GD+V+  ++  L    G+  F GR+GGEEF      S E  
Sbjct: 212 LMLDIDNFKTINDQFGHDAGDEVLRLMASCLQQTPGSLAF-GRMGGEEFGVILPVSGEPV 270

Query: 192 AAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           A      L   I  S       P++  +T SAG+A+       S ++  AD  +Y AK+ 
Sbjct: 271 ACDYVLRLLDTIRRS-------PAVSALTCSAGLADIDANSTSSQVLKTADINMYQAKRE 323

Query: 251 GRNR 254
           G++R
Sbjct: 324 GKDR 327


>gi|317404890|gb|EFV85259.1| hypothetical protein HMPREF0005_04368 [Achromobacter xylosoxidans
           C54]
          Length = 323

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 8/161 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFFDIDYFKQINDNFGHPVGDK 153
           +++L+++D L+G  + +  +  + +  E      + + +  D+DYFKQ+ND +GH  GD 
Sbjct: 157 LARLAKVDGLTGCWSRAEILQRMKAMLEAAKRGARHTALMLDLDYFKQVNDRYGHLGGDA 216

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +    DQL         VGRLGGEEF      + +  A  + + LR  +     NI  G
Sbjct: 217 ALRHFCDQLRACLREGDSVGRLGGEEFVVLLADADKDVALAVCDRLRLSLRQHPANI-DG 275

Query: 214 PSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253
            ++ ++ S G+      +  +S ++ RAD ALY AK++GR+
Sbjct: 276 QALVLSASGGVTGFLETDASMSDVLRRADLALYQAKRAGRD 316


>gi|315282940|ref|ZP_07871234.1| ggdef domain-containing protein [Listeria marthii FSL S4-120]
 gi|313613412|gb|EFR87262.1| ggdef domain-containing protein [Listeria marthii FSL S4-120]
          Length = 375

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 95/188 (50%), Gaps = 15/188 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +LL+ Y    I K   +  N +++ +  D L+ L N   F               + LS+
Sbjct: 184 ALLVFYACNYIDKSNLVIQN-LTETAMTDSLTNLPNMRFFTQQFAWIFAKSQKRKKALSL 242

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ 190
              DID+FK+IND  GH  G+ V+A  S  L    F       R+GGEEFA        +
Sbjct: 243 XXXDIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTE 302

Query: 191 EAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVA 247
           +AA++A+  R+ IE ++   N +SG    +T+S G+A    K   +  ++  ADQALY A
Sbjct: 303 QAALIADFFREEIERAKFPYNPASG---KVTVSIGVASASSKFATTESLFEAADQALYQA 359

Query: 248 KKSGRNRV 255
           K++GRN++
Sbjct: 360 KQNGRNQI 367


>gi|315268460|gb|ADT95313.1| diguanylate cyclase [Shewanella baltica OS678]
          Length = 584

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 94/196 (47%), Gaps = 18/196 (9%)

Query: 74  ISITISLLLGYISGSILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGS-------Y 125
           + +T +L L  +  S+  E   SY  ++  ++  D L+G  N       L         +
Sbjct: 382 MPVTDNLELQQMVNSL--ETLKSYAAQVKGMAETDGLTGCYNRRYLDIQLQKELEYARDH 439

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAA 184
           N  L I+ FDID FKQ ND +GH  GD+ +  + +    +   P   + R GGEEF    
Sbjct: 440 NMPLGIILFDIDNFKQFNDRYGHVAGDQCLKNIVNAAKSILKRPTDMLARYGGEEFMIVL 499

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIAERCHKEP----ISTIIYR 239
             S  +E    A  LR+ I + +I     P   I TISAGI   C + P     +++I R
Sbjct: 500 PSSHLEEVYQFAERLREKIISLEIPHEDSPHAGILTISAGIT--CWQLPQQLDANSLINR 557

Query: 240 ADQALYVAKKSGRNRV 255
           AD+ALY AK +GRNR 
Sbjct: 558 ADEALYHAKLTGRNRT 573


>gi|229917756|ref|YP_002886402.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
 gi|229469185|gb|ACQ70957.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
          Length = 559

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 86/174 (49%), Gaps = 13/174 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +R+   SR D L+ L N  AF       IS +  Y   +S+   DID+FK+IND +GH V
Sbjct: 387 DRLYTESRTDSLTLLANARAFYEYGIQQISDISMY--PISVAMLDIDFFKKINDTYGHQV 444

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+     ++  V     F  R GGEEF          +A  +A  +R+ IE     +
Sbjct: 445 GDQVLQEFGRRIRQVLRADDFAARYGGEEFILLLNHCDMSQAVDIAERIRQQIEAKPFLV 504

Query: 211 SSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKK-SGRNRVVCFSDI 261
                I +T S G+   +    + +   I  AD+ALYV  K +GRNRV  F+++
Sbjct: 505 DHH-EISVTASIGVDTIDAFGNKRLDDTIRNADRALYVGGKYAGRNRVAHFNNL 557


>gi|146311599|ref|YP_001176673.1| diguanylate cyclase [Enterobacter sp. 638]
 gi|145318475|gb|ABP60622.1| diguanylate cyclase [Enterobacter sp. 638]
          Length = 368

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+  L+  D L+   N  A    + +  S  +  S++  D+DYFK  ND +GH  GD+ +
Sbjct: 205 RLDALAHQDALTETANRRAMEGVLENAVSQQKSFSLIMLDVDYFKLYNDTYGHQAGDECL 264

Query: 156 AFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSS----EQEAAILANDLRKI-IENSQIN 209
           A ++  L     TP   V R GGEEF       S    EQ AA + + LR   I +S   
Sbjct: 265 ARVAKALKQSVRTPDDVVSRYGGEEFVVILFDCSTEMAEQVAARIQDTLRAFAIAHSASK 324

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +S      +T+S GIA       +S +I +AD ALY AK++GR+R
Sbjct: 325 VSDC----VTVSLGIAGMTPGLSVSQLIAQADAALYRAKEAGRDR 365


>gi|114570741|ref|YP_757421.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Maricaulis maris MCS10]
 gi|114341203|gb|ABI66483.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Maricaulis maris MCS10]
          Length = 809

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 13/170 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI+ L+  D L+GL N   F       +SS    + +++++FFD+D FK++ND  GH  G
Sbjct: 361 RITHLAHHDTLTGLPNRLKFREALEAELSSAWDNDSQVALMFFDLDRFKEVNDVHGHATG 420

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  +S++L+          RL G+EFA        +E  +  N  R+++ N    +S
Sbjct: 421 DRLLVAVSERLLDALPRNAVAARLSGDEFAVILPDVDSREDGL--NTARRVVNNVGSPLS 478

Query: 212 SGPSIHITISA--GIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            G S+H+ +SA  G+       E    ++ +AD ALY AK  GRN+V  F
Sbjct: 479 IG-SLHLKVSASGGVTMFPLDGEDPDRLMNQADLALYRAKGQGRNQVCDF 527


>gi|77465369|ref|YP_354872.1| periplasmic sensor diguanylate cyclase [Rhodobacter sphaeroides
           2.4.1]
 gi|77389787|gb|ABA80971.1| periplasmic sensor diguanylate cyclase [Rhodobacter sphaeroides
           2.4.1]
          Length = 439

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 95/190 (50%), Gaps = 12/190 (6%)

Query: 74  ISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125
           +++T+   L  ++ +   + + +     R+ +  R D L+ LLN   F  +L        
Sbjct: 241 VAVTVPPELAAVANAFNDMTRTIVEQEARLREFGRRDALTSLLNRREFDHALEQRAAPWT 300

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF--GTPMFVGRLGGEEFAAA 183
            E  +++  DID FK+IND  GH VGD V+  ++ +L      G P+F  R GGEEFA  
Sbjct: 301 GEPYALLLIDIDRFKRINDTHGHAVGDAVLRAVALRLAASARQGLPLF--RYGGEEFALL 358

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              +   EA   A DLR+ +    + +  G  I +TIS GIA     +  + +   AD+A
Sbjct: 359 LDRAGAAEALSEAEDLRRAVAEEPVGLEDGTRIAVTISVGIALGARGQAGAELFAAADRA 418

Query: 244 LYVAKKSGRN 253
           LY AK +GRN
Sbjct: 419 LYAAKDAGRN 428


>gi|225851399|ref|YP_002731633.1| diguanylate cyclase with GAF sensor [Persephonella marina EX-H1]
 gi|225645783|gb|ACO03969.1| diguanylate cyclase with GAF sensor [Persephonella marina EX-H1]
          Length = 423

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 80/167 (47%), Gaps = 14/167 (8%)

Query: 102 QLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + SR D L+ LLN +           IS +       SI   D+D FK+IND +GH VGD
Sbjct: 260 EKSRRDPLTDLLNRTVMDMIIARTIEISKISET--PFSIAMLDVDNFKRINDTYGHIVGD 317

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  +        FV R GGEEF      +  + A  +    RK IE + I   S
Sbjct: 318 CVLKEIAKIIKKSLRKSDFVFRYGGEEFLVLLPSTDSKHAYRIMERTRKNIEKASIKCDS 377

Query: 213 GPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVC 257
              I++TIS G+      E   I  II +ADQ LY AKK G+N V+ 
Sbjct: 378 H-KINVTISIGLITVYPDETLNIKQIIQKADQNLYTAKKKGKNLVIA 423


>gi|156974665|ref|YP_001445572.1| response regulator [Vibrio harveyi ATCC BAA-1116]
 gi|156526259|gb|ABU71345.1| hypothetical protein VIBHAR_02383 [Vibrio harveyi ATCC BAA-1116]
          Length = 655

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 79/162 (48%), Gaps = 11/162 (6%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           SR+D L+G LN S  I  + +       + +  +V  D+D+FK IND  GHP GD V+  
Sbjct: 477 SRLDRLTGSLNRSTIIEKIRAQTVSAPEDMRYVLVLIDLDHFKLINDQHGHPTGDLVLKH 536

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +   +        ++GRLGGEEF        E +       L K I   QI    G S+ 
Sbjct: 537 VCKAIQAKLNKGEYIGRLGGEEFILLLKNVDEIDVPFRIQSLHKTISEGQIKSEQGDSLS 596

Query: 218 ITISAGIAERCHKEPISTI--IYR-ADQALYVAKKSGRNRVV 256
           +T  A +A     +P+S    +Y   DQALY +K++G N V+
Sbjct: 597 VT--ASLAYLSTSKPLSNFDELYSILDQALYQSKRNGHNAVI 636


>gi|154705984|ref|YP_001425443.1| sensory box/GGDEF family protein [Coxiella burnetii Dugway
           5J108-111]
 gi|154355270|gb|ABS76732.1| sensory box/GGDEF family protein [Coxiella burnetii Dugway
           5J108-111]
          Length = 577

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 93/180 (51%), Gaps = 13/180 (7%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           +  SI   L  +  RI+ L+  D L+ L N   FI  L        S + KLS++F D+D
Sbjct: 128 LQQSIFHTLLKNEARIAYLASRDQLTSLPNRREFIHRLNEEIGKPKSVDSKLSLLFLDLD 187

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM--FVGRLGGEEFAAAALG-SSEQEAAI 194
            FK IND  GH +GD+V+  +SD+L  +  +P+  F+G LGG+EF         +++A +
Sbjct: 188 NFKDINDALGHHMGDRVLVHVSDRLRKLDLSPLNYFLGHLGGDEFVILLKDLQQDKDATL 247

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
            A  +      S   I +   +++  S GI  +   K    T++ +AD A+Y AKK GRN
Sbjct: 248 CAKKISNAFSES-FKIKNF-LLYVNFSIGITIDFYSKTDSETLLKKADMAMYQAKKKGRN 305


>gi|28870951|ref|NP_793570.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28854200|gb|AAO57265.1| GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 355

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 117/244 (47%), Gaps = 28/244 (11%)

Query: 24  PHTFMIYF-SIFFSIFIATVIFIANIFLFYIGLTPFYGLE-----YILVENLSLVIISIT 77
           P   MI   S    ++    +F++   L +I L+P  G++     Y+ +  +   + SI 
Sbjct: 99  PIALMIILCSTLLVVYTRDYLFVS--VLSWIILSPAQGIDTDSAAYVFM--MLFFVSSIA 154

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------I 131
           + ++L +     L+++    +R  +LS  D L+ +LN  A + +L   +E+L+       
Sbjct: 155 LGVVLNHTYTRTLRKVLTLESRFRELSLTDDLTDILNRRALMLAL---DEQLANNSGGYF 211

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID FK IND FGH  GD+V+  ++  L    G+  F GR+GGEEF      S E  
Sbjct: 212 LMLDIDNFKTINDQFGHDAGDEVLRLMASCLQQTPGSLAF-GRMGGEEFGVILPVSGEPV 270

Query: 192 AAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           A      L   I  S       P++  +T SAG+A+       S ++  AD  +Y AK+ 
Sbjct: 271 ACDYVLRLLDTIRRS-------PAVSSLTCSAGLADIDANSTSSQVLKTADINMYQAKRE 323

Query: 251 GRNR 254
           G++R
Sbjct: 324 GKDR 327


>gi|293400063|ref|ZP_06644209.1| response regulator [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306463|gb|EFE47706.1| response regulator [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 699

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 96/201 (47%), Gaps = 13/201 (6%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYN--RISQLSRIDCLSGLLNHSAF----ISS 121
           NL    IS+ + + L     ++ K+  I  N  ++ Q + +D  +G+L  +AF    I  
Sbjct: 324 NLENRKISMKVKMDL---ENTLYKQRKIIENNQKLMQYTELDDFTGVLKKTAFRKQTIEK 380

Query: 122 LGSYNEKLSIVFF--DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
           L   N+     F   DID FK IND++GH +GD+VI  +   +         +GR+GG+E
Sbjct: 381 LQRRNKDQKAFFLMMDIDNFKHINDSYGHMIGDRVIKEIVAIIKNNVDQNTLIGRVGGDE 440

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           FA  A      E   + N + KI  + Q          I+IS GI E    +    I  +
Sbjct: 441 FAIYA--DHVYELYKIENCVEKIKNDVQDIKIRNVKKRISISIGICEASDDDSYDVIYKK 498

Query: 240 ADQALYVAKKSGRNRVVCFSD 260
           AD ALY AK SGRN+ V + +
Sbjct: 499 ADHALYEAKLSGRNQYVVYEE 519


>gi|289670142|ref|ZP_06491217.1| hypothetical protein XcampmN_17019 [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 324

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 92/194 (47%), Gaps = 15/194 (7%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------I 119
           + +S +++++ ++L +GY     +++  +    + +L+ +D L+GL N           I
Sbjct: 133 QGVSTIVVTL-VTLAVGYAFSLRMQDDRVH---LEELASLDALTGLPNRRMLERALTHQI 188

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                ++   S++  D+D+FK++ND +GH  GD  ++ L+  L      P  V R GGEE
Sbjct: 189 DQRQPHDRLNSLIILDLDHFKEVNDLYGHAAGDAALSDLATILRFEVREPHQVFRFGGEE 248

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F       S  E       LRK+I         GP   IT+S G A    +        R
Sbjct: 249 FVVLLRAGSLAELEAATERLRKVIRTGL----RGPGGRITVSLGAARHDGETHWQDWFSR 304

Query: 240 ADQALYVAKKSGRN 253
           AD ALY+AK SGR+
Sbjct: 305 ADAALYLAKNSGRD 318


>gi|225872326|ref|YP_002753781.1| sensory box/GGDEF family protein [Acidobacterium capsulatum ATCC
           51196]
 gi|225792079|gb|ACO32169.1| sensory box/GGDEF family protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 508

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 89/174 (51%), Gaps = 12/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIN 143
           ++L  +   +  LS  D L+G++N  A   +L S  E        LS +  D+D+FKQ N
Sbjct: 312 RDLEGARAELEHLSYTDGLTGVVNRRALEKALCSEWEHCIRSGSPLSFILIDVDFFKQAN 371

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D  GH  GD+ +  +++ L       +  +GR GG+EFAA    +    A I+A  +   
Sbjct: 372 DRHGHQAGDEYLIAIAEALRASLHRSIDIIGRYGGDEFAAILPSTDAGAAEIVAERMCHG 431

Query: 203 IENSQINISSGPSIHITISAGIAERC--HKEPI-STIIYRADQALYVAKKSGRN 253
           +   +I  S+  +   TIS GIA  C    EP  + +++ AD ALY AK+SGRN
Sbjct: 432 VRQLRIENSATTTGFATISMGIAT-CLTFMEPTPALLLHTADAALYDAKRSGRN 484


>gi|86748936|ref|YP_485432.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
 gi|86571964|gb|ABD06521.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
          Length = 777

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 86/171 (50%), Gaps = 15/171 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLS-IVFFDIDYFKQINDNFGHP 149
           RI  L+R D L+ L N   F   +        G    +LS ++F D+D FKQ+ND  GHP
Sbjct: 331 RIVHLARYDELTTLPNRVQFRDEIERILSLEHGHGKTRLSALLFIDLDQFKQVNDTLGHP 390

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN-SQ 207
           +GD+++  ++D+L  +     FV R GG+EF        S+++AA+LA   R+I+E  S 
Sbjct: 391 LGDRLLCAVADRLRDMLRPEDFVARFGGDEFVVFQQNVRSDEDAAVLA---RRIVERLSD 447

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +     + I  S GIA          ++  AD ALY AK  GR    CF
Sbjct: 448 RYLIEHHVVEIGASIGIAMTSPGIRADILLKNADMALYRAKADGRG-TFCF 497


>gi|56478925|ref|YP_160514.1| sensor histidine kinase [Aromatoleum aromaticum EbN1]
 gi|56314968|emb|CAI09613.1| Sensory protein with histidine kinase domain [Aromatoleum
           aromaticum EbN1]
          Length = 646

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 98/202 (48%), Gaps = 16/202 (7%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYN-----RISQLSRIDCLSGLLNHSAFISSL- 122
           L+ ++    ++   G + G+I+  L I+       RI+ L+  D L+G+ N   F   L 
Sbjct: 446 LTALVSDAPLTYTEGGLRGAIVVLLDITERKDVERRIAHLATHDVLTGIPNRLMFSQQLT 505

Query: 123 ------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                   Y  +  ++F D+D+FK++ND FGH  GD+++     ++     +   +GR G
Sbjct: 506 HAVDQAKRYGHRFGLLFVDLDHFKRVNDEFGHHAGDQLLREAVSRMQHAVRSSDMLGRRG 565

Query: 177 GEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPIS 234
           G+EF        S  +A ++A  +R  +E  Q  +  G    I+ S GIA    H     
Sbjct: 566 GDEFVVLLPEIESGHDAEVVAEKIRLALE--QPFVLDGKEARISSSIGIALYPDHGADEG 623

Query: 235 TIIYRADQALYVAKKSGRNRVV 256
            ++ RAD+A+Y AK  GRNRV 
Sbjct: 624 ALMRRADEAMYRAKSEGRNRVA 645


>gi|118581892|ref|YP_903142.1| diguanylate cyclase [Pelobacter propionicus DSM 2379]
 gi|118504602|gb|ABL01085.1| diguanylate cyclase [Pelobacter propionicus DSM 2379]
          Length = 474

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 13/168 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S  +I  ++  D L+ L N + F       I++      KL+++F D+D+FK IND  GH
Sbjct: 293 SEQQIRHMAYFDPLTDLPNRTLFFDRLNQAIAAANREQAKLAVLFLDLDHFKSINDTQGH 352

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQ 207
            +GD+V+  +S +L     +   + R+GG+EF     G  E  +A+ +A   RK+I++  
Sbjct: 353 DIGDQVLIEVSRRLHRQIRSCDTLARMGGDEFVLVITGIGETLDASCVA---RKLIDSIH 409

Query: 208 INIS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
             +S  G  +HI++S GIA          T+I  AD A+Y AKKSGRN
Sbjct: 410 SPLSIRGNELHISMSMGIALFADSGADAETLIKNADLAMYHAKKSGRN 457


>gi|322508370|gb|ADX03824.1| GGDEF domain-containing protein [Acinetobacter baumannii 1656-2]
          Length = 401

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 11/174 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           EL     ++S LS+ D L+GL N      +L +       +   L+I+  DID+FK  ND
Sbjct: 214 ELMQQAQQLSLLSQQDALTGLANRRYLDETLDNEWRRALRHETPLTIMMVDIDFFKPYND 273

Query: 145 NFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           + GH  GD+ +  ++  +  +   +   V R GGEEF      ++ Q+A I A  L   I
Sbjct: 274 SLGHLKGDQCLKDIATAISSIAARSGDLVARYGGEEFLLLFPMTNAQQAKIQAERLMNAI 333

Query: 204 EN-SQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254
           +  + ++  S  S ++TIS G+A    +  + IS  + RAD ALY AK +GRN+
Sbjct: 334 KKIAIVHPCSSVSPYVTISVGVATTIPRLNDSISAFVSRADHALYQAKTNGRNQ 387


>gi|315127260|ref|YP_004069263.1| GGDEF family protein [Pseudoalteromonas sp. SM9913]
 gi|315015774|gb|ADT69112.1| hypothetical GGDEF family protein [Pseudoalteromonas sp. SM9913]
          Length = 348

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 91/195 (46%), Gaps = 28/195 (14%)

Query: 92  ELFISYNRISQLSRI----------DCLSGLLNHSAFISSL-------GSYNE--KLSI- 131
           +L  +YN I  L             D L+GL N   F + +        S NE  KL++ 
Sbjct: 157 KLAQAYNEIKDLKEALSVTQEAVDKDSLTGLFNRGKFDTDIVEFCLNASSQNEHGKLAVL 216

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           + FDID+FK+ ND+FGH  GD+V+  ++ ++           R GGEEF       S  +
Sbjct: 217 IMFDIDHFKRFNDDFGHQKGDEVLKLVAQKVQNSVQEQYRAYRFGGEEFCITGYFESIND 276

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISA--GIAERCHKEPIST---IIYRADQALYV 246
           A    N LR  I    I      +    ISA  GIA     EP S    ++ +AD+ALY+
Sbjct: 277 AMAFCNQLRLSIAKLTIRKKEDSNNKRNISASFGIA---LMEPFSKSCLLVEKADRALYL 333

Query: 247 AKKSGRNRVVCFSDI 261
           AK  GRNRV   +D+
Sbjct: 334 AKTHGRNRVEIAADM 348


>gi|310826216|ref|YP_003958573.1| sensory box sensor/GGDEF/EAL domain protein [Eubacterium limosum
           KIST612]
 gi|308737950|gb|ADO35610.1| sensory box sensor/GGDEF/EAL domain protein [Eubacterium limosum
           KIST612]
          Length = 676

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 92/169 (54%), Gaps = 16/169 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKV 154
           + +LS+ D L+GL N +  +  LG    +      +++  DID+FK++ND +GH  GD V
Sbjct: 515 LRRLSQTDPLTGLYNRATLVKRLGRVLRRGTAASHALIILDIDHFKELNDTYGHQFGDTV 574

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA---NDLRKIIENSQINIS 211
           +  ++  L     +  F GRLGG+EF     G S  + AI+    N LR  + N  ++++
Sbjct: 575 LIEVAAALKDCLRSNDFSGRLGGDEFMIFMRGLS--DTAIIRERLNVLRDRLYN--LDLT 630

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + P   +TIS GIA    H +    +  RAD ALY AK+ GR+++V + 
Sbjct: 631 NTP---LTISIGIAFFPAHGKSFQELYDRADTALYEAKRQGRDQIVFYE 676


>gi|291613522|ref|YP_003523679.1| diguanylate cyclase/phosphodiesterase [Sideroxydans lithotrophicus
           ES-1]
 gi|291583634|gb|ADE11292.1| diguanylate cyclase/phosphodiesterase [Sideroxydans lithotrophicus
           ES-1]
          Length = 727

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 8/166 (4%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F       I     +N + SI+  D+D FK IND +GHP GD  +  +S
Sbjct: 310 DPLTGLHNRRHFNEMLEYEIDRSERHNHEFSILMLDLDDFKDINDTYGHPCGDATLCAVS 369

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + +           R+GG+EFA     +S++ A  +A  LR  + + +    +G + H T
Sbjct: 370 EIVRSTMRKGDLTTRIGGDEFAIILTETSQEGAREVAEKLRVALRDHKFEAPNGKTFHTT 429

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            S G IA     + IS ++   D  LY AK  G++ V    ++E+ 
Sbjct: 430 TSIGLIAYPKDAQNISDLMAGVDIGLYRAKSIGKDSVCSVEEVEDK 475


>gi|288939917|ref|YP_003442157.1| PAS/PAC sensor-containing diguanylate cyclase [Allochromatium
           vinosum DSM 180]
 gi|288895289|gb|ADC61125.1| diguanylate cyclase with PAS/PAC sensor [Allochromatium vinosum DSM
           180]
          Length = 434

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 81/165 (49%), Gaps = 10/165 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + QL+R+D L+ L N   F +           Y+  +++   DID+FK +ND +GH VGD
Sbjct: 257 LRQLTRLDPLTQLFNRRYFFTLAEQEYQRFLRYHHPMALCMIDIDHFKSVNDRYGHLVGD 316

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L         + R GGEEF      +  Q A      LR  +   +I   S
Sbjct: 317 TVLCIVAQTLHDNLRQVDILARYGGEEFVILLPETDLQTACASTERLRVAVAERRIETPS 376

Query: 213 GPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
           GP + +T+S G+        ++   ++  ADQ LY AK++GRNRV
Sbjct: 377 GP-VSVTLSLGVVAIADGPAMTLERLLDAADQMLYRAKQAGRNRV 420


>gi|187927646|ref|YP_001898133.1| diguanylate cyclase [Ralstonia pickettii 12J]
 gi|187724536|gb|ACD25701.1| diguanylate cyclase [Ralstonia pickettii 12J]
          Length = 499

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 96/205 (46%), Gaps = 17/205 (8%)

Query: 67  ENLSLVIISITISLLLGYISGS-----ILKELFISYNRISQLSRIDCLSGLLNHSAF--- 118
           + LS ++   ++S+ L + +G       L+   ++ N + +L++ D L+GL N  A    
Sbjct: 290 QRLSWIVGLSSLSVSLAFCAGVWLLAFALRGRVMAENHLRELTQTDPLTGLKNRRALDVA 349

Query: 119 ----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM--FV 172
                  L   + +LS++F D D+FK+ ND  GH  GD  + +L+ Q +           
Sbjct: 350 LENEWDRLQRNDSRLSVLFIDADHFKRYNDAHGHAQGDVALQYLA-QCISKHARRRGDLA 408

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG--IAERCHK 230
            R GGEEF      + E  A  +A  +R  +E +  ++        T+S G   A R   
Sbjct: 409 ARYGGEEFVVLLPDTDEAGATRIAEAIRAEVEGAGASVGDAGLAPFTVSVGCATARRASF 468

Query: 231 EPISTIIYRADQALYVAKKSGRNRV 255
             ++ +   AD ALY AK+ GRNR+
Sbjct: 469 PSLNALTKAADDALYEAKRKGRNRI 493


>gi|16803951|ref|NP_465436.1| hypothetical protein lmo1912 [Listeria monocytogenes EGD-e]
 gi|224501289|ref|ZP_03669596.1| hypothetical protein LmonFR_01990 [Listeria monocytogenes FSL
           R2-561]
 gi|254827203|ref|ZP_05231890.1| GGDEF domain-containing protein [Listeria monocytogenes FSL N3-165]
 gi|254831487|ref|ZP_05236142.1| hypothetical protein Lmon1_09038 [Listeria monocytogenes 10403S]
 gi|255026924|ref|ZP_05298910.1| hypothetical protein LmonocytFSL_12411 [Listeria monocytogenes FSL
           J2-003]
 gi|284802357|ref|YP_003414222.1| hypothetical protein LM5578_2113 [Listeria monocytogenes 08-5578]
 gi|284995499|ref|YP_003417267.1| hypothetical protein LM5923_2064 [Listeria monocytogenes 08-5923]
 gi|16411365|emb|CAC99990.1| lmo1912 [Listeria monocytogenes EGD-e]
 gi|258599586|gb|EEW12911.1| GGDEF domain-containing protein [Listeria monocytogenes FSL N3-165]
 gi|284057919|gb|ADB68860.1| hypothetical protein LM5578_2113 [Listeria monocytogenes 08-5578]
 gi|284060966|gb|ADB71905.1| hypothetical protein LM5923_2064 [Listeria monocytogenes 08-5923]
          Length = 375

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 15/190 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +LL+ Y    I K   +  N +++ +  D L+ L N   F    G          + LS+
Sbjct: 184 ALLVFYACNYIDKSNLVIQN-LTETAMTDSLTNLPNMRFFTQQFGWIFTKSQKRKKSLSL 242

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ 190
              DID+FK+IND  GH  G+ V+A  S  L    F       R+GGEEFA        +
Sbjct: 243 FIIDIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTE 302

Query: 191 EAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVA 247
           +AA++A+  R+ +E ++   N +SG    +T+S G+A        +  ++  ADQALY A
Sbjct: 303 QAALIADFFREEVERAKFPYNPASG---KVTVSIGVASASSNFSTTESLFEAADQALYQA 359

Query: 248 KKSGRNRVVC 257
           K++GRN++  
Sbjct: 360 KQNGRNQIAV 369


>gi|254255450|ref|ZP_04948766.1| hypothetical protein BDAG_04793 [Burkholderia dolosa AUO158]
 gi|124901187|gb|EAY71937.1| hypothetical protein BDAG_04793 [Burkholderia dolosa AUO158]
          Length = 514

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 11/167 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPVG 151
           ++ L+R D L+GL N  A  + L     +L        S++F D D FKQ ND +GH  G
Sbjct: 328 LTDLTRTDPLTGLHNRRALDAVLADEWARLRRGSSGSLSVLFIDADRFKQYNDRYGHAQG 387

Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209
           D  + F+++ +            R GGEEF A    +  + AA +A  +R+ +  +++  
Sbjct: 388 DTALRFVAECIRAHTRRRGDVAARYGGEEFVAVLPDTDARGAAKVAEAIRREVARNRLAG 447

Query: 210 -ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              + P   ++I     +      +  +  +AD+ALY+AK  GRNRV
Sbjct: 448 FPDAVPPFTVSIGCATGDAARPSSVDALTRQADRALYMAKHRGRNRV 494


>gi|325272237|ref|ZP_08138656.1| diguanylate cyclase [Pseudomonas sp. TJI-51]
 gi|324102626|gb|EGC00054.1| diguanylate cyclase [Pseudomonas sp. TJI-51]
          Length = 387

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 97/200 (48%), Gaps = 13/200 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           L +++S+ I ++T+ +   Y  G +L     S +R+  L+  D L+G LN  A +    S
Sbjct: 183 LKQSISVAIGTVTVMM---YSIGLVLMAKERSESRLQHLALHDVLTGTLNRRAILERFAS 239

Query: 125 YNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
             ++       L++   DID+FK+IND +GH  GD+V+     QL         +GR GG
Sbjct: 240 ELDRARGQQASLAVAMIDIDHFKRINDLYGHLAGDEVLCHCVRQLQQRLRQGDSLGRYGG 299

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPIST 235
           EEF      +    A      LR+ I  S     +G  I +  S G+       K+  ++
Sbjct: 300 EEFLLLLPATDRAGALTAVQGLREAIARSPARF-AGDHIELRFSVGLWCGVPGSKDSTAS 358

Query: 236 IIYRADQALYVAKKSGRNRV 255
           ++ +AD ALY AK +GR+ V
Sbjct: 359 LLAQADAALYQAKAAGRDTV 378


>gi|254491734|ref|ZP_05104913.1| GGDEF domain protein [Methylophaga thiooxidans DMS010]
 gi|224463212|gb|EEF79482.1| GGDEF domain protein [Methylophaga thiooxydans DMS010]
          Length = 358

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 91/164 (55%), Gaps = 10/164 (6%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N   F       +S    ++  LS +F D+D+FK++NDN+GH  GD V+  +S
Sbjct: 192 DPLTGINNRRFFDQRLQEEVSRAKRFHTPLSCLFIDLDHFKRVNDNYGHQAGDAVLKQVS 251

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L         + R GGEEF      +  ++AA +   +R+ ++ ++  I SG +IH+T
Sbjct: 252 ELLNDRLRNTDVLARYGGEEFVILLSHTHSKDAAEIGEQIRERVDAAEFTIPSGKTIHVT 311

Query: 220 ISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNRVVCFSD 260
           +S G+A    +  I   + ++  ADQA+Y AK SGRN+++   D
Sbjct: 312 LSIGLATMTKEGNIHDENALVAAADQAVYAAKLSGRNKLMQTPD 355


>gi|254457966|ref|ZP_05071393.1| response regulator PleD [Campylobacterales bacterium GD 1]
 gi|207085359|gb|EDZ62644.1| response regulator PleD [Campylobacterales bacterium GD 1]
          Length = 423

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 93/185 (50%), Gaps = 13/185 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFD 135
           +T++ +  + + S   E   SY+ ++ +     L+ L   +  I +    N   + V  D
Sbjct: 246 VTLTNITSFDAESKYNEHEASYDSLTNIYNRTKLNNLF--TIQIETAKVNNNTFAFVMLD 303

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           IDYFK +NDN+GH +GD V+  ++D +           R GGEEF         ++A  +
Sbjct: 304 IDYFKAVNDNYGHLIGDAVLIQMTDLIKKHIRDSDIFARWGGEEFVLLLPHVGLKKAEEI 363

Query: 196 ANDLRKIIENSQINISSGPSIH-ITISAGIAERCHK--EPISTIIYRADQALYVAKKSGR 252
           AN LR  IE  +      P I  IT S G+   C+K  + I +II RAD ALY AK +GR
Sbjct: 364 ANYLRTKIEADKF-----PEIDSITCSFGVT--CYKDGDNIDSIIKRADSALYDAKDAGR 416

Query: 253 NRVVC 257
           N +VC
Sbjct: 417 N-IVC 420


>gi|190891799|ref|YP_001978341.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190697078|gb|ACE91163.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 753

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 15/180 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDN 145
           +L  +  R+  LS  D L+GL N   F+  + S        ++L ++  D+D FK+IND 
Sbjct: 310 KLVRARQRLEHLSLHDALTGLPNRR-FVDQMISQPPRPDPQDRLILIHIDLDRFKEINDT 368

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIE 204
            GH  GD V+   + +L  + G      R+GG+EF  A+  +  E +AA LA   R+I++
Sbjct: 369 KGHAGGDMVLQTTASRLADLTGPNDVAARIGGDEFVVASWSTDPEPKAAELA---RQIVD 425

Query: 205 NSQINI-SSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             Q  I   G    +  S G+A   E      +  ++  AD ALY AKK+GR R   F++
Sbjct: 426 ALQQTIFIDGAGYVVGASVGVAWETESARDRDLGQLLLNADLALYQAKKAGRGRAAVFTE 485


>gi|242313544|ref|ZP_04812561.1| diguanylate cyclase [Burkholderia pseudomallei 1106b]
 gi|242136783|gb|EES23186.1| diguanylate cyclase [Burkholderia pseudomallei 1106b]
          Length = 441

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 11/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           + LF ++  + + +  D L+ + N S F             +N  L++V  D+D+FKQ N
Sbjct: 254 RRLFDAHASLMRTASHDALTMVYNRSYFNEQFERAFHYARRHNTLLALVMVDVDHFKQYN 313

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD  +A ++  L  V G    FV R GGEEFA    G+ E+ AA +A   R+ 
Sbjct: 314 DTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPGADERGAATIAERARQA 373

Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
           +E  +I   + P  ++T+SAG A       E    +I  AD ALY AK  GRN
Sbjct: 374 VERLRIAADTAPG-YVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRN 425


>gi|320323580|gb|EFW79664.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320328212|gb|EFW84216.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330881948|gb|EGH16097.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 527

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 15/172 (8%)

Query: 107 DCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L      +  E+  LS++  D D+FK+ ND++GH  GD+ +  L+
Sbjct: 336 DKLTGLANRRRFDQFLEVEFKRARRERSLLSLILIDADHFKRYNDHYGHLAGDECLVALA 395

Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +      P  V  R GGEE A    G+ E  A  +A ++ + I + QI   + P   +
Sbjct: 396 RVVEQCIRRPGDVAARYGGEEIAVVLPGTDESSARQVAENILQAIRDEQIEHPASPFGIV 455

Query: 219 TISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           T+S G+A     +R   +   ++I  AD+ALY AK  GRNRV   S+I  +T
Sbjct: 456 TVSLGVATFVGTDRQLDQ--RSLIELADRALYAAKSQGRNRVNVASEIATST 505


>gi|298487368|ref|ZP_07005416.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298158171|gb|EFH99243.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 527

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 15/172 (8%)

Query: 107 DCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L      +  E+  LS++  D D+FK+ ND++GH  GD+ +  L+
Sbjct: 336 DKLTGLANRRRFDQFLEVEFKRARRERSLLSLILIDADHFKRYNDHYGHLAGDECLVALA 395

Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +      P  V  R GGEE A    G+ E  A  +A ++ + I + QI   + P   +
Sbjct: 396 RVVEQCIRRPGDVAARYGGEEIAVVLPGTDESSARQVAENILQAIRDEQIEHPASPFGIV 455

Query: 219 TISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           T+S G+A     +R   +   ++I  AD+ALY AK  GRNRV   S+I  +T
Sbjct: 456 TVSLGVATFVGTDRQLDQ--RSLIELADRALYAAKSQGRNRVNVASEIATST 505


>gi|209521738|ref|ZP_03270424.1| diguanylate cyclase [Burkholderia sp. H160]
 gi|209497831|gb|EDZ98000.1| diguanylate cyclase [Burkholderia sp. H160]
          Length = 613

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 90/182 (49%), Gaps = 13/182 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           +  L    + +  L+  D L+GL N   F+  L S         E L+++F D+D FKQI
Sbjct: 396 MDALHSKQSELVHLASHDVLTGLPNRMLFMQKLESAIEEAKFRGEGLAVLFVDLDRFKQI 455

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG--SSEQEAAILANDLR 200
           ND FGH VGDKV+  ++ +L  V      V RLGG+EF     G  ++E   AI A  + 
Sbjct: 456 NDQFGHSVGDKVLVAVARRLKDVLYPGDVVARLGGDEFIVLIEGPRAAEVTPAIAAVIME 515

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
            + E   I+   G S+ +  S GI+E  H       ++  AD A+Y AK  GR   + + 
Sbjct: 516 ALNETLTID---GNSMTVGASIGISEFPHDSGNAEELLLNADAAMYAAKSGGRCAYLRYR 572

Query: 260 DI 261
           D+
Sbjct: 573 DL 574


>gi|59714159|ref|YP_206934.1| GGDEF domain-containing protein [Vibrio fischeri ES114]
 gi|59482407|gb|AAW88046.1| GGDEF domain protein [Vibrio fischeri ES114]
          Length = 530

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 104/215 (48%), Gaps = 13/215 (6%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           P + +E I    + LV   I +S ++  +   +  +  I +N I +L+  D L+GL+N  
Sbjct: 319 PKWSIERISSSEIILVGCFILLSFIVSLVITQLQLKKKIDHNEIKKLAHHDSLTGLINRG 378

Query: 117 AF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            F       +        KL++++ D+D FK +NDNFGH  GD  +  ++  L   F   
Sbjct: 379 YFKKLFHWKMQKARKNETKLALIYIDLDGFKDLNDNFGHSAGDLALKAVARNLYSTFSEN 438

Query: 170 MFVGRLGGEEFAAAALGSSEQEA--AILANDLRKIIENSQINISSGPSIHITISAGIA-E 226
            +V RLGG+EFA       ++E   A++   L     N+ + +   P   ++ S G+A  
Sbjct: 439 SYVARLGGDEFAVLIHTVIDEEEIFALVEEFLES--SNTPLMLEDIP-YQLSTSIGLAFF 495

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             H   I+ +++ AD A+Y  K+SG+N    F  +
Sbjct: 496 PEHGRSINELMHNADAAMYDIKRSGKNGFKVFEKL 530


>gi|115524947|ref|YP_781858.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisA53]
 gi|115518894|gb|ABJ06878.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisA53]
          Length = 802

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/162 (33%), Positives = 84/162 (51%), Gaps = 9/162 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF---ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGD 152
           RI+ L+R D L+ L N + F   I  +  Y  +    ++++ D+D+FK+IND+ GHP+GD
Sbjct: 370 RIAHLARHDALTDLPNRTTFREEIDRVLRYTRREVGAAVLYIDLDHFKEINDSLGHPIGD 429

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE--AAILANDLRKIIENSQINI 210
           +++  ++ +L         V RLGG+EFA   +   E E  AA LA  +  II       
Sbjct: 430 ELLIEVARRLADCIRDGDLVARLGGDEFAVIQISHHEPESDAAALAMRIVSIISTPYELQ 489

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
               SI  ++   +A     EP   +I +AD ALY AK  GR
Sbjct: 490 GHHVSIGASVGIALAPTDASEP-DELIKKADLALYRAKAEGR 530


>gi|310639898|ref|YP_003944656.1| membrane domain involved in signal transduction; diguanylate
           cyclase/phosphodiesterase domain 1; diguanylate
           cyclase/phosphodiesterase domain 2 [Paenibacillus
           polymyxa SC2]
 gi|309244848|gb|ADO54415.1| Putative membrane domain involved in signal transduction;
           Diguanylate cyclase/phosphodiesterase domain 1;
           Diguanylate cyclase/phosphodiesterase domain 2
           [Paenibacillus polymyxa SC2]
          Length = 205

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 5/173 (2%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF--ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            +  N + +L+  D ++GL N +A        +  E  +I++ D+D FK IND +GH +G
Sbjct: 1   MMERNLLRKLAYQDPVTGLFNRNALELFWKRSNGKEGFAIMYLDLDGFKAINDTYGHQIG 60

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DK++  +SD L+ V  +     R+GG+EF          +  +LA  L + I +   NI 
Sbjct: 61  DKLLRRVSDHLLQVTNSHQKAFRIGGDEFLLIMKDYDADQVTVLAELLLQKI-SVPYNI- 118

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            G ++ +T S GI      K+P+ +++  AD A+Y AK  GRNR   +  I  
Sbjct: 119 QGINLQVTGSIGITMHPSPKKPLPSLLKEADIAMYQAKGMGRNRYAVYQRIRQ 171


>gi|296285048|ref|ZP_06863046.1| sensory box/GGDEF family protein [Citromicrobium bathyomarinum
           JL354]
          Length = 881

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 65/184 (35%), Positives = 85/184 (46%), Gaps = 11/184 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           SG+ L E   S    S+L+  D L+GL N  A   +L              SI+  D+D 
Sbjct: 327 SGTDLTERRRSAEHASRLALYDSLTGLANRHALSQALSKLLTHRNPAQRVCSILMLDLDR 386

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILAN 197
           FK +ND FGHP GD ++  ++ +L  V G    VGR+GG+EF        E+     L N
Sbjct: 387 FKHVNDTFGHPTGDALLNQVARRLEKVVGDLGTVGRIGGDEFQVLIPKRCEKARLEQLGN 446

Query: 198 DLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           D+  I   SQ     G    I  S GIA    H      ++  AD ALY AK +GR R  
Sbjct: 447 DI--IHSLSQPYSIDGNRAVIGASVGIAIAPEHGGTSERLVRSADLALYAAKDAGRGRYR 504

Query: 257 CFSD 260
            FSD
Sbjct: 505 VFSD 508


>gi|262368657|ref|ZP_06061986.1| WspR [Acinetobacter johnsonii SH046]
 gi|262316335|gb|EEY97373.1| WspR [Acinetobacter johnsonii SH046]
          Length = 420

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 92/175 (52%), Gaps = 11/175 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
            LS+ D L+ + N   F   + +Y E+       LSI+F D+D+FK+ ND +GH  GD V
Sbjct: 245 HLSQNDELTKISNRRNFDEMMDTYYEQSRQDETPLSILFIDVDFFKKYNDFYGHQKGDDV 304

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSG 213
           I+ ++  +        FV R GGEEF      +    A  +A+++ + IE  +I +  S 
Sbjct: 305 ISSIAKSIKNAIRHMDFVARYGGEEFVVLLPETDAHGAYAVASNIYRAIERLEIPHEMSE 364

Query: 214 PSIHITISAGIAERCHKEPISTI--IYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S  +TIS GI     +  +S +  +  ADQALY AKK GRN++  +  +  +TC
Sbjct: 365 VSPFVTISLGITVFKGEVDLSKVELLGIADQALYRAKKLGRNQIY-YQPLTTSTC 418


>gi|260773892|ref|ZP_05882807.1| sensory box/GGDEF family protein [Vibrio metschnikovii CIP 69.14]
 gi|260610853|gb|EEX36057.1| sensory box/GGDEF family protein [Vibrio metschnikovii CIP 69.14]
          Length = 466

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 18/167 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG---------SYNEKLSIVFFDIDYFKQINDNFGH 148
           N++ + S  D L+G+ N   F   +            +E   +   DID+FK+IND FGH
Sbjct: 299 NKLREQSEKDALTGIWNRRKFDQQIRLECHRVKRYPEHEHSCLAILDIDHFKRINDQFGH 358

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD VI  +++ L        F+ R+GGEEFA     +  +EA       + +IE  +I
Sbjct: 359 SHGDYVIQSVAETLRDGLRESDFLARIGGEEFAIILPHTPIEEA-------QAVIERLRI 411

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +    + +++ISAGI++    E       RAD+ALY +K +GRN+V
Sbjct: 412 KVYQLHAQNVSISAGISDIMGSE--QETYQRADKALYESKATGRNQV 456


>gi|254563085|ref|YP_003070180.1| diguanylate cyclase [Methylobacterium extorquens DM4]
 gi|254270363|emb|CAX26359.1| putative diguanylate cyclase (GGDEF) [Methylobacterium extorquens
           DM4]
          Length = 390

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 18/176 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVG 151
            R ++++R D L+GL N    ++++G+        + L  +  DID+FK+ ND  GH  G
Sbjct: 216 ERNAEMARTDQLTGLFNRH-HLATIGADLIPKRDTQSLGALLIDIDHFKRFNDTQGHLAG 274

Query: 152 DKVIAFLSD----QLVVVFGTPMFVG---RLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           D+ I  +SD     LV        VG   R GGEEF     G    +AA L   +R+ +E
Sbjct: 275 DRCIRTVSDLVREMLVPANENKPPVGTAVRFGGEEFLVLLPGMDAAQAAALGEAIRRRVE 334

Query: 205 NSQI-NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              I +   GP+  +T+S G+A+  + H E + T++  AD ALY AK  GRNRV  
Sbjct: 335 GVGIPHPGLGPNAVVTLSIGVADWKKGHTE-LDTLVNAADAALYQAKNLGRNRVAV 389


>gi|222640396|gb|EEE68528.1| hypothetical protein OsJ_26970 [Oryza sativa Japonica Group]
          Length = 1380

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 13/167 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGD 152
           +++ SR D L+GL N  A  ++L     ++        +   DID+FK IND  GH  GD
Sbjct: 151 LAEQSRTDALTGLPNRRAMAAALEEAVAEIDGQPGLACVALLDIDHFKHINDFQGHATGD 210

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+A L   L   F       R GGEEF A   G+    A +    LR  + +  +    
Sbjct: 211 RVLAELGVLLRSHFAGRGMAARYGGEEFVAVMPGTDLHTAELQCEFLRLAVADLPLGFP- 269

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                +TIS G+A+    E +  ++ RAD+ALY AK +GRNR +  +
Sbjct: 270 -----VTISIGVAQHQAGESVDDMLARADKALYRAKGNGRNRTLAIA 311


>gi|254522461|ref|ZP_05134516.1| diguanylate cyclase [Stenotrophomonas sp. SKA14]
 gi|219720052|gb|EED38577.1| diguanylate cyclase [Stenotrophomonas sp. SKA14]
          Length = 524

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 82/164 (50%), Gaps = 10/164 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +++ SR D L+GLLN      +L +   +    +I+  DID FK IND  GH VGD  I 
Sbjct: 362 LNRASRTDPLTGLLNRRGLQQALDALQVQGIPFAILALDIDRFKSINDAHGHDVGDAAIV 421

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++DQ+         + R GGEEF     G + + A      LR+ I +        P  
Sbjct: 422 HIADQMRRYSRDSDILCRAGGEEFLLLLPGINAEPARQAGERLRQHIADHPFE----PVG 477

Query: 217 HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            IT+S G+A     H +     +  AD+ALY+AK+ GRNRVV +
Sbjct: 478 TITVSLGVAHFPSFHVD-AEQALRLADKALYMAKEQGRNRVVVY 520


>gi|254515058|ref|ZP_05127119.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [gamma proteobacterium NOR5-3]
 gi|219677301|gb|EED33666.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [gamma proteobacterium NOR5-3]
          Length = 815

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 91/171 (53%), Gaps = 15/171 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ QL+  D L+GL N +         I+       +L+++F DID FK IND+ GH  G
Sbjct: 388 QLEQLAHFDSLTGLPNRALARDRLAQGIAQSKRQGSRLAVLFLDIDNFKVINDSLGHHAG 447

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  +S +L  +      + RLGG+EF A  L    +E A+ A +  K++  ++    
Sbjct: 448 DELLLAMSGRLRNILRGGDTLSRLGGDEFLAVLLDVKSREDAVFAAN--KLLATTKERFE 505

Query: 212 S-GPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCF 258
           + G S+H ++S G+A   + E    I  +I  AD A+Y AK +GR RV  +
Sbjct: 506 ALGNSVHSSLSIGLA--LYPEDGLSIDELIQHADTAMYQAKSAGRGRVATY 554


>gi|218531980|ref|YP_002422796.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
 gi|218524283|gb|ACK84868.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
          Length = 390

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 18/176 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVG 151
            R ++++R D L+GL N    ++++G+        + L  +  DID+FK+ ND  GH  G
Sbjct: 216 ERNAEMARTDQLTGLFNRH-HLATIGADLIPKRDTQSLGALLIDIDHFKRFNDTQGHLAG 274

Query: 152 DKVIAFLSD----QLVVVFGTPMFVG---RLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           D+ I  +SD     LV        VG   R GGEEF     G     AA L   +R+ +E
Sbjct: 275 DRCIRTVSDLVREMLVPANENKPPVGTAVRFGGEEFLVLLPGMDAARAAALGEAIRRRVE 334

Query: 205 NSQI-NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              I +   GP+  +T+S G+A+  + H E + T++  AD ALY AK  GRNRV  
Sbjct: 335 GVGIPHPGLGPNAVVTLSIGVADWKKGHTE-LDTLVNAADAALYQAKNLGRNRVAV 389


>gi|217077028|ref|YP_002334744.1| diguanylate cyclase [Thermosipho africanus TCF52B]
 gi|217036881|gb|ACJ75403.1| diguanylate cyclase [Thermosipho africanus TCF52B]
          Length = 167

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 78/165 (47%), Gaps = 11/165 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++  LS  D L+ L N       +         Y    S++  DID FK+IND +GH V
Sbjct: 5   KKLKYLSERDQLTDLYNRHKMNEEIRKHYYNFKRYGRPFSLLMVDIDKFKKINDTYGHMV 64

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  L+  LV          R  GEEF      +  ++A  +A  +RK IE      
Sbjct: 65  GDEVLKKLAKILVKNIRKTDIASRWVGEEFLILLSETDLEQAIEVAEKIRKTIEKE---- 120

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S    I IT+S G+    + E I  ++   D+ LY AK+SGRNRV
Sbjct: 121 SFPKDIRITVSIGVDSVENHEHIKDLLILVDEKLYKAKESGRNRV 165


>gi|167826624|ref|ZP_02458095.1| diguanylate cyclase [Burkholderia pseudomallei 9]
          Length = 441

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 11/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           + LF ++  + + +  D L+ + N S F             +N  L++V  D+D+FKQ N
Sbjct: 254 RRLFDAHASLMRTASHDALTMVYNRSYFNEQFERAFHYARRHNTLLTLVMVDVDHFKQYN 313

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD  +A ++  L  V G    FV R GGEEFA    G+ E+ AA +A   R+ 
Sbjct: 314 DTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPGADERGAATIAERARQA 373

Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
           +E  +I   + P  ++T+SAG A       E    +I  AD ALY AK  GRN
Sbjct: 374 VERLRIAADTAPG-YVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRN 425


>gi|165918173|ref|ZP_02218259.1| diguanylate cyclase (GGDEF) domain/cyclic diguanylate
           phosphodiesterase (EAL) domain protein [Coxiella
           burnetii RSA 334]
 gi|165918033|gb|EDR36637.1| diguanylate cyclase (GGDEF) domain/cyclic diguanylate
           phosphodiesterase (EAL) domain protein [Coxiella
           burnetii RSA 334]
          Length = 577

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 93/180 (51%), Gaps = 13/180 (7%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           +  SI   L  +  RI+ L+  D L+ L N   FI  L        S + KLS++F D+D
Sbjct: 128 LQQSIFHTLLKNEARIAYLASRDQLTSLPNRREFIHRLNEEIGKPKSVDSKLSLLFLDLD 187

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM--FVGRLGGEEFAAAALG-SSEQEAAI 194
            FK IND  GH +GD+V+  +SD+L  +  +P+  F+G LGG+EF         +++A +
Sbjct: 188 NFKDINDALGHHMGDRVLVHVSDRLRKLDLSPLNYFLGHLGGDEFVILLKDLQQDKDATL 247

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
            A  +      S   I +   +++  S GI  +   K    T++ +AD A+Y AKK GRN
Sbjct: 248 CAKKISNAFSES-FKIKNF-LLYVNFSIGITIDFYSKTDSETLLKKADMAMYQAKKKGRN 305


>gi|126641740|ref|YP_001084724.1| putative two-component response regulator [Acinetobacter baumannii
           ATCC 17978]
 gi|169796029|ref|YP_001713822.1| hypothetical protein ABAYE1952 [Acinetobacter baumannii AYE]
 gi|184158051|ref|YP_001846390.1| GGDEF domain-containing protein [Acinetobacter baumannii ACICU]
 gi|213157237|ref|YP_002319282.1| GGDEF domain protein [Acinetobacter baumannii AB0057]
 gi|215483486|ref|YP_002325703.1| WspR [Acinetobacter baumannii AB307-0294]
 gi|239501830|ref|ZP_04661140.1| WspR [Acinetobacter baumannii AB900]
 gi|260555078|ref|ZP_05827299.1| WspR [Acinetobacter baumannii ATCC 19606]
 gi|301346166|ref|ZP_07226907.1| WspR [Acinetobacter baumannii AB056]
 gi|301596744|ref|ZP_07241752.1| WspR [Acinetobacter baumannii AB059]
 gi|332851678|ref|ZP_08433603.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332865947|ref|ZP_08436727.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
 gi|332874511|ref|ZP_08442414.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6014059]
 gi|126387624|gb|ABO12122.1| putative two-component response regulator [Acinetobacter baumannii
           ATCC 17978]
 gi|169148956|emb|CAM86831.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
 gi|183209645|gb|ACC57043.1| GGDEF domain protein [Acinetobacter baumannii ACICU]
 gi|213056397|gb|ACJ41299.1| GGDEF domain protein [Acinetobacter baumannii AB0057]
 gi|213987853|gb|ACJ58152.1| WspR [Acinetobacter baumannii AB307-0294]
 gi|260411620|gb|EEX04917.1| WspR [Acinetobacter baumannii ATCC 19606]
 gi|323517992|gb|ADX92373.1| GGDEF domain-containing protein [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332729685|gb|EGJ61020.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332734997|gb|EGJ66083.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
 gi|332737355|gb|EGJ68279.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6014059]
          Length = 409

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 11/174 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           EL     ++S LS+ D L+GL N      +L +       +   L+I+  DID+FK  ND
Sbjct: 222 ELMQQAQQLSLLSQQDALTGLANRRYLDETLDNEWRRALRHETPLTIMMVDIDFFKPYND 281

Query: 145 NFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           + GH  GD+ +  ++  +  +   +   V R GGEEF      ++ Q+A I A  L   I
Sbjct: 282 SLGHLKGDQCLKDIATAISSIAARSGDLVARYGGEEFLLLFPMTNAQQAKIQAERLMNAI 341

Query: 204 EN-SQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254
           +  + ++  S  S ++TIS G+A    +  + IS  + RAD ALY AK +GRN+
Sbjct: 342 KKIAIVHPCSSVSPYVTISVGVATTIPRLNDSISAFVSRADHALYQAKTNGRNQ 395


>gi|219848192|ref|YP_002462625.1| diguanylate cyclase with GAF sensor [Chloroflexus aggregans DSM
           9485]
 gi|219542451|gb|ACL24189.1| diguanylate cyclase with GAF sensor [Chloroflexus aggregans DSM
           9485]
          Length = 586

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 101/191 (52%), Gaps = 17/191 (8%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLS 130
           + LL   ++G++   +  ++  I  L+  D L+ L+N   F       I     Y   +S
Sbjct: 391 LELLAATVAGALHNAMRFAH--IQSLTITDVLTELVNRRHFFQILHHEIERSRRYRTPVS 448

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           I   D+D+FKQ+ND +GH VGDK++  ++ +          + R GGEE+    L  +  
Sbjct: 449 IAMIDLDHFKQVNDTYGHVVGDKLLREVALRCRRYVRDVDILARYGGEEY-GLILPETRY 507

Query: 191 EAAILAND-LRKIIENSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYV 246
           E+A+LA + LR+ + +    I  G  I +T+S G+A      H +P S+++  AD+ALY+
Sbjct: 508 ESALLAAERLRQHVMSVPFTI-DGHLISMTLSIGVASFQADVHPDP-SSLVVDADRALYL 565

Query: 247 AKKSGRNRVVC 257
           AK+ GRN  VC
Sbjct: 566 AKQRGRN-CVC 575


>gi|115378447|ref|ZP_01465607.1| diguanylate cyclase [Stigmatella aurantiaca DW4/3-1]
 gi|310821486|ref|YP_003953844.1| response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115364553|gb|EAU63628.1| diguanylate cyclase [Stigmatella aurantiaca DW4/3-1]
 gi|309394558|gb|ADO72017.1| Response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 322

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 87/176 (49%), Gaps = 12/176 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148
             +R+  L++ D L+GL N  +    L         Y   LS+V  D+D+ K IND  GH
Sbjct: 132 QQHRLRVLAQTDGLTGLANFRSLTLRLEEEFRRALRYQYPLSVVVIDLDHLKAINDGMGH 191

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VG++ I  LS  L        F  R GG+EF A     +  EAA  A  +R  + N  +
Sbjct: 192 DVGNRAILALSTHLKNNLRESDFAARFGGDEFVALLPHQTAAEAAAFAERIRAGLRNVVV 251

Query: 209 NISSG-PS-IHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCFS 259
             S G P+   +++S GIA+   + P      ++  AD ALYVAK+ GR+RVV  S
Sbjct: 252 QRSDGRPAPFGLSVSVGIADHSPEAPRENTDALMKAADAALYVAKREGRDRVVVHS 307


>gi|163849043|ref|YP_001637087.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222527011|ref|YP_002571482.1| diguanylate cyclase [Chloroflexus sp. Y-400-fl]
 gi|163670332|gb|ABY36698.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222450890|gb|ACM55156.1| diguanylate cyclase [Chloroflexus sp. Y-400-fl]
          Length = 370

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 81/167 (48%), Gaps = 19/167 (11%)

Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            Q S  D L+G+ N   F       I     Y   L+++  D+D+FKQ ND FGH  GD+
Sbjct: 209 QQQSLTDPLTGVFNRRGFALRLSEEIERARRYQVTLALLLIDVDHFKQYNDTFGHLAGDE 268

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  ++  L         V R GGEEFA     ++   A +L   LR++++     +++ 
Sbjct: 269 VLRMIAQLLSEGCCKHDIVARYGGEEFAVILPATAGDGAQVLGERLRRLVQ-----MAAW 323

Query: 214 PSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNRVV 256
           P   +TIS G A     +P  T    +I RAD ALY AK  GRN  V
Sbjct: 324 PLHPLTISVGGAV---LQPEMTDEHDLIARADSALYQAKAQGRNTCV 367


>gi|327188461|gb|EGE55675.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 402

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 95/177 (53%), Gaps = 14/177 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148
           S   +  ++  D L+G+LN    +       E+       ++++ FD+D+FK++ND FGH
Sbjct: 193 SERHLRTMTLTDSLTGVLNRRGLLGYFEPSQERAHGEQRQVAVILFDLDHFKRVNDRFGH 252

Query: 149 PVGDKV-IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
             GD V IAF       + G     GR+GGEEFAA A  + + EA  +A  +R   E  +
Sbjct: 253 QAGDAVLIAFARMARQYIPGN--IFGRMGGEEFAAFAAVADQMEAEAIAEAIRT--EFCR 308

Query: 208 INISSGPSI-HITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           + +++G +I  +T+S GIA     +  I  +I  AD+ALY AK +GRN  V F + E
Sbjct: 309 LPVATGEAIVPVTVSIGIALASSIDANIDKLISAADRALYAAKAAGRNCTVTFGETE 365


>gi|309779464|ref|ZP_07674225.1| sensory box/GGDEF family protein [Ralstonia sp. 5_7_47FAA]
 gi|308921705|gb|EFP67341.1| sensory box/GGDEF family protein [Ralstonia sp. 5_7_47FAA]
          Length = 624

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 31/188 (16%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNE-KLSIVFFDIDYFKQINDNFGH 148
           +  RI  L+  D L+GLLN SA         +L   N+ ++S++F D+D FK +ND  GH
Sbjct: 180 AQQRIRHLATHDTLTGLLNRSALEDRLEHALALARRNQSRVSVMFLDLDRFKNVNDTLGH 239

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF-----AAAALGSSEQEAAILANDLRKII 203
             GD ++  ++ +L         V RLGG+EF     A   LG+            R++ 
Sbjct: 240 QFGDMLLREVAARLQACAREADTVARLGGDEFVVMLEALDGLGT------------RRVA 287

Query: 204 ENSQINISS-----GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           E     IS+     G  +++ +S GIA   H  +  +T++ +AD A+Y+AK+ GRN    
Sbjct: 288 ERILSAISAPFHIEGQELYLGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNFQT 347

Query: 258 F-SDIENN 264
           F SD+++ 
Sbjct: 348 FTSDLDDR 355


>gi|289649229|ref|ZP_06480572.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 527

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 15/172 (8%)

Query: 107 DCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L      +  E+  LS++  D D+FK+ ND++GH  GD+ +  L+
Sbjct: 336 DKLTGLANRRRFDQFLEVEFKRARRERSLLSLILIDADHFKRYNDHYGHLAGDECLVALA 395

Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +      P  V  R GGEE A    G+ E  A  +A ++ + I + QI   + P   +
Sbjct: 396 RVVEQCIRRPGDVAARYGGEEIAVVLPGTDESSARQVAENILQAIRDEQIEHPASPFGIV 455

Query: 219 TISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           T+S G+A     +R   +   ++I  AD+ALY AK  GRNRV   S+I  +T
Sbjct: 456 TVSLGVATFVGTDRQLDQ--RSLIELADRALYAAKSQGRNRVNVASEIATST 505


>gi|261822842|ref|YP_003260948.1| diguanylate cyclase with PAS/PAC and GAF sensors [Pectobacterium
           wasabiae WPP163]
 gi|261606855|gb|ACX89341.1| diguanylate cyclase with PAS/PAC and GAF sensors [Pectobacterium
           wasabiae WPP163]
          Length = 610

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 74/157 (47%), Gaps = 11/157 (7%)

Query: 107 DCLSGLLNHSAFISSLGS---------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           D L+GL N S F     +         + +K  +   DID FK IND +GH  GD V+  
Sbjct: 452 DFLTGLPNRSTFFEQASAFFQLIQQNQHADKSCLAIIDIDSFKNINDKYGHLAGDAVLKE 511

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           L+  + +       V RLGGEEF       S Q A +    +RK IE   +      S+H
Sbjct: 512 LAMLMRMSLRQEDLVARLGGEEFIILLKDVSYQTAVMTIERIRKAIEQHTLEYDR-QSLH 570

Query: 218 ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
            TISAGIA  R     +   I  AD+ LY AK+ GRN
Sbjct: 571 FTISAGIAAYRPEFASVEDWIQLADENLYSAKRQGRN 607


>gi|254283729|ref|ZP_04958697.1| ggdef domain protein [gamma proteobacterium NOR51-B]
 gi|219679932|gb|EED36281.1| ggdef domain protein [gamma proteobacterium NOR51-B]
          Length = 418

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 100/198 (50%), Gaps = 15/198 (7%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           + L+++ ++   L  Y+S   +KE  +   +I+  S  D L+G+ N +A   S  +  ++
Sbjct: 220 VGLILLLVSQYYLRSYLS---IKEKLLEQLKIT--STTDTLTGIANRNALFESARALIQQ 274

Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFA 181
                 L+    D+D FK IND +GH  GD+ +   +  L        FV GR+GGEEF 
Sbjct: 275 RQPGTFLAAAIIDLDLFKNINDTYGHQAGDETLIVFARLLDEYCNARKFVVGRIGGEEFG 334

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRA 240
              +  +  +     + L+  ++  ++ ISSG  +  +T SAG A    KE +  ++  A
Sbjct: 335 VVCVTRNRDDMLNTLSSLKAALK--KVTISSGEQTFDVTFSAGYAVSTDKEELHELMKLA 392

Query: 241 DQALYVAKKSGRNRVVCF 258
           D ALY +K SGRNR+  +
Sbjct: 393 DFALYESKDSGRNRITLY 410


>gi|114561386|ref|YP_748899.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114332679|gb|ABI70061.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 312

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 90/169 (53%), Gaps = 9/169 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           ++ +I  L   D L+G+ N  ++        +    +N++LS++  DIDYFK INDNFGH
Sbjct: 138 AHQQIESLVNTDQLTGMHNRRSYNQLAKQECARAIRFNQQLSLLVIDIDYFKVINDNFGH 197

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-IIENSQ 207
             GD ++   +     +      + R+GGEEF      +  + A I+A  +R+ I ++S 
Sbjct: 198 DGGDSILKQFAQICSDLLRQSDSLSRIGGEEFTIILPMTDGEGAMIIAERIREHIAKHSF 257

Query: 208 INISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255
               +  +I++T+S G++     +  I  +  RAD A+Y AK+ GRN+V
Sbjct: 258 HTTQTNNNINVTVSIGVSSLTAGDKVIQDLFSRADMAMYCAKRGGRNQV 306


>gi|288941699|ref|YP_003443939.1| response regulator receiver modulated diguanylate cyclase
           [Allochromatium vinosum DSM 180]
 gi|288897071|gb|ADC62907.1| response regulator receiver modulated diguanylate cyclase
           [Allochromatium vinosum DSM 180]
          Length = 428

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 80/163 (49%), Gaps = 9/163 (5%)

Query: 107 DCLSGLLNHSAFISS-----LGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F  +      G+   +  L+ V  DID+FK++ND +GH  GD+VI  ++
Sbjct: 268 DYLTGLYNRRHFFETGETLYAGAKRRQITLAAVMLDIDHFKRVNDTYGHLAGDRVIKQVA 327

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         +GR GGEEF     G  +   A+    LR  + ++ I      S+ +T
Sbjct: 328 SLLACGVRQADLLGRYGGEEFCILLTGIDQSSLAMTLERLRSTVASTPIE-HEDQSLSVT 386

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           IS G A     + +  +I RAD  LY AK+ GRNR V    +E
Sbjct: 387 ISLG-ATLALGDSLQAMINRADACLYHAKQGGRNRFVIDDSVE 428


>gi|237798396|ref|ZP_04586857.1| response regulator, putative/diguanylate cyclase [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331021248|gb|EGI01305.1| response regulator, putative/diguanylate cyclase [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 551

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 12/158 (7%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +  L           + L     DID+FK++ND+ GHP+GD+VI  LS
Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRARREGKPLCFAMLDIDHFKKVNDSHGHPMGDRVIKSLS 438

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L        F+GR GGEEFA     +    A  + +++R  +  ++I+  + P+ +  
Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAVVMPDTDIHSAHKVLDEIR--LRFAEIHYPAQPADLSC 496

Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T SAG+     H + +S +  +AD ALY AK +GRN+V
Sbjct: 497 TFSAGVVSLGAHVDSLS-LASQADTALYRAKHAGRNQV 533


>gi|212636415|ref|YP_002312940.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212557899|gb|ACJ30353.1| GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 518

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 79/166 (47%), Gaps = 8/166 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +L+ +D L+ L N +A    +           + L +   DID+FK IND+FGH  GDK
Sbjct: 354 QKLNLLDTLTQLPNRAALQERMEIEYRNYKRTKQPLWVAVADIDHFKSINDSFGHSTGDK 413

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  ++  L        FV R GGEEF       SE +   L N +R+ +++        
Sbjct: 414 TLQVIAMALKNSLRETEFVSRFGGEEFVFLLPDVSESDIKPLLNRVREKVKSIPFKF-KN 472

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I +T+S G A+    E I+    RAD ALY AK   R+RV+  S
Sbjct: 473 QRITVTVSIGAAQIIENELITETFERADAALYKAKHQSRDRVIIDS 518


>gi|218244913|ref|YP_002370284.1| PAS/PAC sensor-containing diguanylate cyclase [Cyanothece sp. PCC
           8801]
 gi|218165391|gb|ACK64128.1| diguanylate cyclase with PAS/PAC sensor [Cyanothece sp. PCC 8801]
          Length = 668

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 77/160 (48%), Gaps = 9/160 (5%)

Query: 107 DCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+GL N      S+           +  L ++  DID+FKQ NDNFGH  GD V+  +
Sbjct: 503 DPLTGLFNRRYLEISINRELNTIIQDQDYSLGLIMLDIDHFKQFNDNFGHEAGDLVLQTV 562

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           ++ L           R GGEEF      +S  +    A  +R+ I+  +I   S P   I
Sbjct: 563 ANCLQNHIRQSDIACRFGGEEFMIILPRASLNKTLERAEKIRESIKQLKIEYKSQPLDSI 622

Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           T S G+A    +   +  +   AD+ALY AKK GR+RVVC
Sbjct: 623 TASFGVAAFPQNGTTLHELFIDADKALYQAKKQGRDRVVC 662


>gi|119468935|ref|ZP_01611960.1| diguanylate cyclase [Alteromonadales bacterium TW-7]
 gi|119447587|gb|EAW28854.1| diguanylate cyclase [Alteromonadales bacterium TW-7]
          Length = 319

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 92/202 (45%), Gaps = 30/202 (14%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---------- 122
           +I+  IS L  YI      +L+I +      SR+D L+GLLN   F   +          
Sbjct: 115 LITDRISALAMYILNVYANQLWILHK-----SRLDPLTGLLNRQTFDKKVMEIVTGNGFL 169

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                        +   DID FK +ND FGH VGD VIA ++  +   F    +  R GG
Sbjct: 170 LPREQADTKRCWYLAIVDIDLFKNVNDTFGHVVGDGVIAQVAKLIKNNFRIEDYAFRYGG 229

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI---TISAGIAERCHKEPIS 234
           EEFA      +  +A      LR+        ++S    HI   TIS G  E    + +S
Sbjct: 230 EEFAIVFQSQTNTDALNALTRLRQ-------RVASHDFEHIQQLTISIGFLELQSADTVS 282

Query: 235 TIIYRADQALYVAKKSGRNRVV 256
           +I+ +AD ALY +KK+GRN+V 
Sbjct: 283 SIVNQADMALYHSKKTGRNKVT 304


>gi|94263964|ref|ZP_01287766.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455636|gb|EAT05818.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 302

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 83/163 (50%), Gaps = 13/163 (7%)

Query: 106 IDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+G+ N   F  +L           + LS++  DID+FK  NDN+GH  GD  +  +
Sbjct: 139 LDGLTGIANRRNFDQALEREWKRAQRSTQPLSLLLLDIDFFKPYNDNYGHGAGDDTLRQV 198

Query: 159 SDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI 216
           +  L      P     R GGEEF      ++++ A  +  ++R+ I    I +  S  + 
Sbjct: 199 ASGLQQSLSRPADLAARYGGEEFVCLLPETNQEGAQKMGEEIRRAIAGLAIPHAHSQVAD 258

Query: 217 HITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVV 256
           HIT+S G A      +  P + ++  AD+ALY AK+SGRNRVV
Sbjct: 259 HITVSVGAASMTANGNNNP-AQLLENADKALYRAKESGRNRVV 300


>gi|114047859|ref|YP_738409.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113889301|gb|ABI43352.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 467

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 78/156 (50%), Gaps = 4/156 (2%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D LSGLLN   F   ++SL   + + S+   D+D FK IND +GH VGD+VI  L+  + 
Sbjct: 312 DPLSGLLNRRGFMPQLTSLTGTSTRYSVAMLDLDNFKMINDTYGHSVGDRVIQLLAQLIH 371

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
               +     RLGGEEFA         +   +   +RK      I  +   +I+ T+S G
Sbjct: 372 NHSRSQDIAARLGGEEFALVLRDIDVAQVYPVLERIRKSFAEMSIA-AEEHTIYCTVSIG 430

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             E        ++++ AD+ALY AK  G+N +V + 
Sbjct: 431 WVEYQQGITGESLLHLADKALYQAKAQGKNTIVKYQ 466


>gi|327190644|gb|EGE57732.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 417

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 91/187 (48%), Gaps = 12/187 (6%)

Query: 89  ILKELFIS-YNRIS--QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           IL++L  +  +RI   Q +  D L+  +   AF       IS    +  +LS + FDID+
Sbjct: 154 ILEDLAAAAMDRIDLMQSAATDSLTEAMTRRAFKQEADQLISLALRHQHELSCIVFDIDH 213

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND +GH  GD V+  ++             GR+GGEEFA        Q A  +A  
Sbjct: 214 FKQVNDRYGHAAGDAVLKAVASVCKATLRAGDLFGRIGGEEFAVVLPHVDRQGAFAVAEK 273

Query: 199 LRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L   I    I+   G  +H+T S G  A     + I T++ +AD A+Y AK  GRNR V 
Sbjct: 274 LCAAIAFQPIHGDHGI-LHVTASLGSSALSIVSKDIETLLAQADAAMYQAKHGGRNRCVS 332

Query: 258 FSDIENN 264
           +S I  +
Sbjct: 333 WSSIHAD 339


>gi|306821368|ref|ZP_07454976.1| conserved hypothetical protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550586|gb|EFM38569.1| conserved hypothetical protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 450

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 9/163 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           ++  L+  D L+ + N   FIS +        ++E  +I  FDID FK +NDN+GH +GD
Sbjct: 279 KLFNLANFDMLTSISNRRYFISQVEQIMASDDFSE-ATICTFDIDNFKSVNDNYGHDIGD 337

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +A ++  +         V R+GGEEF +A L     +A  + +DL   + N +I ++ 
Sbjct: 338 MALADIAKLMNDKLEGIGIVARMGGEEF-SAFLNCRLNDAGDMIDDLLNAVRNIKIELND 396

Query: 213 GP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
              S+  TIS G+A     + +   + +AD ALY AK  GR+R
Sbjct: 397 HCISLKFTISGGMARVKKGDKLDKFLKKADTALYDAKHQGRDR 439


>gi|302188474|ref|ZP_07265147.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 355

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 111/240 (46%), Gaps = 15/240 (6%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV---IISIT 77
           S S    +I  S    ++    + +A   L +  L+P  G++   V  + +    I S++
Sbjct: 97  SLSVAVMIILCSTLLVVYTRDYLLVA--ILAWCILSPAQGVDTDSVATMFMTLFFITSVS 154

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFF 134
           +  ++ +     L+ +    ++  +LS  D L+ +LN  A + +L ++   N     +  
Sbjct: 155 LGSVMNHTYTRTLRTVLSLEHQFRELSLTDDLTAILNRRALMQALDNHVLNNSAGYFLML 214

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID FK IND FGH  GD+ +  ++  L    G+  F GR+GGEEF       S+ +A  
Sbjct: 215 DIDDFKTINDQFGHDAGDQALRVMAGCLQKTVGSLAF-GRMGGEEFGVILPMCSDDDARD 273

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
               L   I  S    +  P   +T SAG+A+       S ++  AD  LY AK+ G++R
Sbjct: 274 YVLSLLDCIRKSS---AVSP---LTCSAGLADITAAADSSAVLKTADINLYQAKRGGKDR 327


>gi|157962335|ref|YP_001502369.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157847335|gb|ABV87834.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
          Length = 341

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 6/156 (3%)

Query: 107 DCLSGLLNHSAFISSLG----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+  LN  AF + L      + + L ++  DID+FK  ND +GH +GD+V+  ++ +L
Sbjct: 182 DALTSSLNRRAFDNDLKGILQQHPQGLCLIIADIDHFKVFNDTYGHQLGDQVLKAVTKRL 241

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITI 220
                    + R GGEEFA     S  + A  LA  +R+ +E   + +   G +I +I+ 
Sbjct: 242 TEACKDGTKLYRFGGEEFALIVPKSELRRARQLAESMRRSLEKLTLKDKRKGETINNISA 301

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S G+AE    +    +I RAD  LY AK  GRNRV+
Sbjct: 302 SFGVAEYQTDDTNIALIDRADSQLYQAKNLGRNRVM 337


>gi|77918195|ref|YP_356010.1| response regulator [Pelobacter carbinolicus DSM 2380]
 gi|77544278|gb|ABA87840.1| response regulator receiver modulated diguanylate cyclase
           [Pelobacter carbinolicus DSM 2380]
          Length = 417

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 81/152 (53%), Gaps = 14/152 (9%)

Query: 112 LLNHSAFI-SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           L +H   I + LG  ++ L     DID+FK++ND FGH  GD  +  +++ L        
Sbjct: 272 LFDHGERIYNQLGGSDKNLCCAMLDIDHFKKVNDTFGHHAGDMTLKRVANLLQDKLPESS 331

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP---SIHITISAGIAER 227
            + R+GGEEF A   GS E +   L   +R  I  +++ +S  P   ++HIT+S G+   
Sbjct: 332 VLARIGGEEFCALVPGSKE-DVVRLFERIRCAI--AELPVSLAPDNETVHITVSIGVC-- 386

Query: 228 CHKEP---ISTIIYRADQALYVAKKSGRNRVV 256
              EP   +  ++ RAD  LY AKK GR+RV+
Sbjct: 387 --SEPGRNLLDMLSRADAYLYQAKKEGRDRVI 416


>gi|83644174|ref|YP_432609.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83632217|gb|ABC28184.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 427

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 10/169 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ +LS  D L+GL N   F   +         Y     +V  DID+FK+IND + H VG
Sbjct: 256 QLKELSIRDELTGLYNRRFFNEEVKVLHANALRYGNGFCLVLGDIDFFKRINDGYSHVVG 315

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-I 210
           D+V+  ++  L+        V R GGEE   A   +S Q A  +   +RK IE    + I
Sbjct: 316 DEVLKQVAKILMNSIRNSDIVARYGGEEMVLALPNTSPQAAMEMMERIRKTIEQHPWDSI 375

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + G  + +T+S GI +  + E    ++  AD+ LY AK +GRN+V   S
Sbjct: 376 AEG--MKVTMSFGICDETNGEHFEHMLAVADELLYKAKNNGRNQVCSLS 422


>gi|238797910|ref|ZP_04641401.1| hypothetical protein ymoll0001_35650 [Yersinia mollaretii ATCC
           43969]
 gi|238718215|gb|EEQ10040.1| hypothetical protein ymoll0001_35650 [Yersinia mollaretii ATCC
           43969]
          Length = 519

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 9/156 (5%)

Query: 104 SRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           ++ D ++ L N     ++L       +  S++  DID+FK IND +GH VGD+VI  L+ 
Sbjct: 366 AQTDPMTSLYNRRGLATTLEPIAQLGQPFSVIALDIDHFKLINDTYGHDVGDEVIKRLAT 425

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHIT 219
           Q+         + R GGEEF     G++   A  +AN LR  +E  +I +I       IT
Sbjct: 426 QIRDSSRDTDILCRSGGEEFLMLLPGTTLDVATQVANRLRHNVEMMEIADIRP-----IT 480

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           IS G+A    +      +  AD+ALY AK+ GRNRV
Sbjct: 481 ISLGVAYWSGEGMPENALKLADEALYRAKQRGRNRV 516


>gi|330502907|ref|YP_004379776.1| sensory box protein [Pseudomonas mendocina NK-01]
 gi|328917193|gb|AEB58024.1| sensory box protein [Pseudomonas mendocina NK-01]
          Length = 1095

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 16/183 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           + EL  +  ++  L+  D L+ L N +         IS L  ++ + +++F D+D+FK I
Sbjct: 646 ISELKQAQAQVQHLAYHDALTNLPNRALLMDRLTQQISLLKRHDLRGALLFLDLDHFKHI 705

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI------LA 196
           ND+ GHPVGD V+  ++ +L         V RLGG+EF     G   + + +      +A
Sbjct: 706 NDSLGHPVGDSVLRLVTARLEASVRLEDTVARLGGDEFVVLLSGLEGKRSEVTRHVRQVA 765

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + LR+++  ++  +  G  + +T S G+A    H    + ++ RAD ALY AK SGRN +
Sbjct: 766 DKLRQLL--AEPMLLDGHRLQVTPSIGVALIPDHGNTPADLLKRADIALYRAKDSGRNAI 823

Query: 256 VCF 258
             F
Sbjct: 824 QLF 826


>gi|311696236|gb|ADP99109.1| GGDEF domain protein [marine bacterium HP15]
          Length = 367

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 72/160 (45%), Gaps = 8/160 (5%)

Query: 104 SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GL N     + L              SI   D+D FKQIND FGH  GD V+ 
Sbjct: 193 ARTDELTGLANRRDMQNRLAMEFSRYQRSGHHFSIALIDLDLFKQINDQFGHDAGDDVLR 252

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             +  +  V        R GGEEF      +S  +A  LA  LR  +           ++
Sbjct: 253 EFAGLIRTVIRQADVAARWGGEEFLVLLPDTSLLQALTLAERLRSDVSRHAFRFRD-QAL 311

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +TISAG+        +  ++ +AD  LY AK+SGRNR+ 
Sbjct: 312 PVTISAGVCSIAKARSLDDLLKQADLHLYNAKESGRNRIA 351


>gi|260903009|ref|ZP_05911404.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AQ4037]
 gi|308108366|gb|EFO45906.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AQ4037]
          Length = 787

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 22/189 (11%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFDIDYFKQIN 143
            + +EL + Y +  +L+  D L+ L N    H      L S    L +++ D+D FK +N
Sbjct: 324 DMYEELNVIYKKTKRLAETDHLTQLANRHRFHQLATRELASPPSHLWVIYVDLDNFKYVN 383

Query: 144 DNFGHPVGDKVIAFLS-------DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA--- 193
           D +GH +GD ++   S        +    + +P F  RL G+EF  A L SS ++     
Sbjct: 384 DKYGHELGDNLLKVFSTHIKNACQKFSQQYDSPCFGARLSGDEF--AILLSSNKDVGSIP 441

Query: 194 -ILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250
            +LA +L K I N SQ   ++ P   +T S GIA+     + I+ ++  AD A+Y AK++
Sbjct: 442 DLLAKELLKPINNLSQTWANAFP---VTASVGIAQYPQDGQDIAKLLSNADAAMYQAKRA 498

Query: 251 GRNRVVCFS 259
           G+N+   +S
Sbjct: 499 GKNQYAYYS 507


>gi|56460549|ref|YP_155830.1| signal protein [Idiomarina loihiensis L2TR]
 gi|56179559|gb|AAV82281.1| Signaling protein with a ligand-binding sensor domain and GGDEF
           domain [Idiomarina loihiensis L2TR]
          Length = 970

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/166 (33%), Positives = 84/166 (50%), Gaps = 14/166 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL----------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +  ++R D L+ L N  AF   L          G+Y   LS+   D+DYFK++ND + H 
Sbjct: 805 LETMARQDPLTNLGNRRAFDERLQHELNRCRRDGTY---LSLAIIDVDYFKEVNDRYLHT 861

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GDKV+  L++ L        +V R GGEEFA     S  + A   +  +R+ I  +  +
Sbjct: 862 IGDKVLIRLAEILNDEIRDIDYVARWGGEEFAVLITNSELEIAREASERMRERIATTLFD 921

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                 + IT+S G+A        S+++  AD+ALY AK  GRNRV
Sbjct: 922 -DLVEDMKITVSIGVASSYDYADHSSLLVAADKALYQAKSEGRNRV 966


>gi|301513154|ref|ZP_07238391.1| WspR [Acinetobacter baumannii AB058]
          Length = 336

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 11/174 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           EL     ++S LS+ D L+GL N      +L +       +   L+I+  DID+FK  ND
Sbjct: 149 ELMQQAQQLSLLSQQDALTGLANRRYLDETLDNEWRRALRHETPLTIMMVDIDFFKPYND 208

Query: 145 NFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           + GH  GD+ +  ++  +  +   +   V R GGEEF      ++ Q+A I A  L   I
Sbjct: 209 SLGHLKGDQCLKDIATAISSIAARSGDLVARYGGEEFLLLFPMTNAQQAKIQAERLMNAI 268

Query: 204 EN-SQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254
           +  + ++  S  S ++TIS G+A    +  + IS  + RAD ALY AK +GRN+
Sbjct: 269 KKIAIVHPCSSVSPYVTISVGVATTIPRLNDSISAFVSRADHALYQAKTNGRNQ 322


>gi|217969803|ref|YP_002355037.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
 gi|217507130|gb|ACK54141.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
          Length = 510

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 88/174 (50%), Gaps = 13/174 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQIN 143
           +L  +   +++L+R D L+GL N        H       G      +++  DID FK IN
Sbjct: 333 DLARANEELARLARRDALTGLPNRLAVDERLHEESRRQPGPCGTGCAVLMIDIDSFKPIN 392

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD V+A ++  L        FV R GGEEF      ++ + A  +A  LR ++
Sbjct: 393 DTYGHATGDAVLALVAGLLAATVREADFVSRYGGEEFLVLLPDTALEGARTVAEKLRTVV 452

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
             +   ++      ITIS G+A        ++T++ +AD ALY AK+SGRNR+V
Sbjct: 453 AETAHPVAG----RITISIGLAMAAPGTGELATVVAQADAALYEAKRSGRNRLV 502


>gi|254225341|ref|ZP_04918953.1| GGDEF family protein [Vibrio cholerae V51]
 gi|125622182|gb|EAZ50504.1| GGDEF family protein [Vibrio cholerae V51]
          Length = 443

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 19/168 (11%)

Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+G+LN  AF   L          N KL+++FFD+D FK+IND  GH VGD V+
Sbjct: 269 LSERDSLTGILNRRAFKQQLSHALIKAKRSNMKLALLFFDLDKFKEINDTKGHEVGDLVL 328

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND---LRKIIENSQINISS 212
             ++ +L        F GRLGG+EF    L   +  + ++      L K+ +  Q+N   
Sbjct: 329 QEIAQRLKGSIRESDFCGRLGGDEF-VVCLDLLQDHSGVINKAYLMLEKLQKPLQLN--- 384

Query: 213 GPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             S+ I +S G+A   E+  + P   ++  AD+A+Y AK    N V C
Sbjct: 385 QESLEIGVSIGVALYPEQATQVP--ELLRIADEAMYTAKHQSGNTVYC 430


>gi|114562515|ref|YP_750028.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114333808|gb|ABI71190.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 635

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 13/174 (7%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDN 145
           L+ S  +  + S+ D L+G+ N                 +N  L+++ FDID FK IND+
Sbjct: 461 LWQSRRQFKRRSQTDYLTGIANRRHTFEQGKKRFYQAKKHNRSLAVIMFDIDNFKAINDH 520

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH +GD  I     +          +GR+GGEEF      + + +A  +A  LR  IE+
Sbjct: 521 YGHDIGDLAIKACGRRARNWLKKNDILGRIGGEEFLIILPDTEQAQAVEIAERLRTSIES 580

Query: 206 SQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +Q  + +   ++ TIS  +A    + H+  +  II +AD  LY AK +GRN+VV
Sbjct: 581 NQF-VFNDVKMNFTISVSVAMLTPQTHE--LVDIIKQADLGLYQAKDNGRNQVV 631


>gi|283851002|ref|ZP_06368287.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio sp. FW1012B]
 gi|283573648|gb|EFC21623.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio sp. FW1012B]
          Length = 507

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 4/137 (2%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              LS+V  D+D+FK IND  G   GD  +  L+     +        R+GGEEFA    
Sbjct: 366 GRPLSVVMLDLDHFKAINDTHGPEAGDAFLKALAGLCRDLLRGQYLAARIGGEEFALLLP 425

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQAL 244
            +    A  LA+ LR       +   +G    +T+SAG++E R  +  +  ++ RADQAL
Sbjct: 426 DTDTAGALALADRLRLATAGRPL---AGLDQTVTLSAGVSEVRAGETTVDAVLSRADQAL 482

Query: 245 YVAKKSGRNRVVCFSDI 261
           Y AK +GRN V+ + D+
Sbjct: 483 YAAKHAGRNHVLVYGDL 499


>gi|251797774|ref|YP_003012505.1| diguanylate cyclase with GAF sensor [Paenibacillus sp. JDR-2]
 gi|247545400|gb|ACT02419.1| diguanylate cyclase with GAF sensor [Paenibacillus sp. JDR-2]
          Length = 653

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 13/155 (8%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL         + S   K    +++  DID+FKQIND FGH VGD+++  +S  + 
Sbjct: 500 DNLTGLHARHYLNEQIQSRQRKDPLGALILVDIDHFKQINDTFGHQVGDQILVQVSSIIR 559

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                     R GGEE A    G   ++A  +A  +R  +E     +       +T+S G
Sbjct: 560 SSIRQGDIAARWGGEELAVYLPGIRSEQAYRIAERIRTHVEAETQPV-------VTVSCG 612

Query: 224 IAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++E      K  + ++ YRAD ALY AK +GRNR+
Sbjct: 613 VSEWTFENEKISVESLFYRADMALYEAKNNGRNRI 647


>gi|116253698|ref|YP_769536.1| sensory box GGDEF/EAL domain-containing protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115258346|emb|CAK09448.1| putative sensory box GGDEF/EAL domain protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 717

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 95/180 (52%), Gaps = 11/180 (6%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFF 134
           LLG IS  + +E  +   +++ L+  D L+GL N +AF + +       + +  +++++ 
Sbjct: 268 LLG-ISQDVTEERTVEA-KLAHLAMHDSLTGLPNRAAFSNHINQRAVEATADSAIALLYI 325

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D+FK IND+ GH  GD ++  +S++L+ +      V RLGG+EFA        + A  
Sbjct: 326 DVDHFKNINDSKGHAAGDALLCQVSERLLQLAEEGDLVARLGGDEFAVVLELDEPERAGR 385

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
            A  L K +  S+     G   H+T S GIA    H      ++  AD ALY AK+SGR+
Sbjct: 386 FAQRLLKAL--SRAFDLDGAREHVTCSIGIALAPDHAGDADVLMRHADLALYAAKESGRS 443


>gi|226198707|ref|ZP_03794271.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9]
 gi|225929147|gb|EEH25170.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9]
          Length = 462

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 11/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           + LF ++  + + +  D L+ + N S F             +N  L++V  D+D+FKQ N
Sbjct: 275 RRLFDAHASLMRTASHDALTMVYNRSYFNEQFERAFHYARRHNTLLTLVMVDVDHFKQYN 334

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD  +A ++  L  V G    FV R GGEEFA    G+ E+ AA +A   R+ 
Sbjct: 335 DTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPGADERGAATIAERARQA 394

Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
           +E  +I   + P  ++T+SAG A       E    +I  AD ALY AK  GRN
Sbjct: 395 VERLRIAADTAPG-YVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRN 446


>gi|163853176|ref|YP_001641219.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163664781|gb|ABY32148.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 395

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 18/176 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVG 151
            R ++++R D L+GL N    ++++G+        + L  +  DID+FK+ ND  GH  G
Sbjct: 221 ERNAEMARTDQLTGLFNRH-HLATIGADLIPKRDTQSLGALLIDIDHFKRFNDTQGHLAG 279

Query: 152 DKVIAFLSD----QLVVVFGTPMFVG---RLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           D+ I  +SD     LV        VG   R GGEEF     G     AA L   +R+ +E
Sbjct: 280 DRCIRTVSDLVREMLVPANENKPPVGTAVRFGGEEFLVLLPGMDAARAAALGEAIRRRVE 339

Query: 205 NSQI-NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              I +   GP+  +T+S G+A+  + H E + T++  AD ALY AK  GRNRV  
Sbjct: 340 GVGIPHPGLGPNAVVTLSIGVADWKKGHTE-LDTLVNAADAALYQAKNLGRNRVAV 394


>gi|302520655|ref|ZP_07272997.1| diguanylate cyclase [Streptomyces sp. SPB78]
 gi|302429550|gb|EFL01366.1| diguanylate cyclase [Streptomyces sp. SPB78]
          Length = 207

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 81/155 (52%), Gaps = 15/155 (9%)

Query: 104 SRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +R D L+GL    AF         +++  +V  D+D+FKQIND +GH  GD ++A ++ +
Sbjct: 30  ARRDPLTGLWTRDAFTRKARRLLRDKRAVVVLADVDHFKQINDRYGHAAGDALLASVARR 89

Query: 162 LVVVFGTPMFVGRLGGEEFAAAAL---GSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           L    G     GRLGG+EFAA  L   G++    A+L   L +  E     +++      
Sbjct: 90  LAHATGPAGVCGRLGGDEFAAVLLDKDGTAADLLALLHGVLARPAEGQPSEVAT------ 143

Query: 219 TISAGIAERCHKEP---ISTIIYRADQALYVAKKS 250
           T+S G   R    P   +S ++ RAD+A+Y AK++
Sbjct: 144 TVSLGWV-RASDHPGNDLSALLARADEAMYEAKRA 177


>gi|257057938|ref|YP_003135826.1| diguanylate cyclase with PAS/PAC sensor [Cyanothece sp. PCC 8802]
 gi|256588104|gb|ACU98990.1| diguanylate cyclase with PAS/PAC sensor [Cyanothece sp. PCC 8802]
          Length = 668

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 77/160 (48%), Gaps = 9/160 (5%)

Query: 107 DCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+GL N      S+           +  L ++  DID+FKQ NDNFGH  GD V+  +
Sbjct: 503 DPLTGLFNRRYLEISINRELNTIIQDQDYSLGLIMLDIDHFKQFNDNFGHEAGDLVLQTV 562

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           ++ L           R GGEEF      +S  +    A  +R+ I+  +I   S P   I
Sbjct: 563 ANCLQNHIRQSDIACRFGGEEFMIILPRASLDKTLERAEKIRESIKQLKIEYKSQPLDSI 622

Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           T S G+A    +   +  +   AD+ALY AKK GR+RVVC
Sbjct: 623 TASFGVAAFPQNGTTLHELFIDADKALYQAKKQGRDRVVC 662


>gi|187777039|ref|ZP_02993512.1| hypothetical protein CLOSPO_00584 [Clostridium sporogenes ATCC
           15579]
 gi|187773967|gb|EDU37769.1| hypothetical protein CLOSPO_00584 [Clostridium sporogenes ATCC
           15579]
          Length = 892

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 104/210 (49%), Gaps = 16/210 (7%)

Query: 61  LEYILVENLSLVIISITISLLLGYISG--SILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           LE I +E L     ++  S+ L Y +   + + E      +I  L+  D L+GL N    
Sbjct: 427 LEEIYIEELRKWFSAVVYSMELDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKI 486

Query: 119 ISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           I ++        N++ +++F D+D+FK IND  GH VGD V+  +S +  ++ G    +G
Sbjct: 487 IETINKTIKNYRNKRFAVLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLIGPNHKIG 546

Query: 174 RLGGEEFAAA----ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
           RLGG+EF       ++  +E+ A  +   L   I+  + ++  G SI I++     +   
Sbjct: 547 RLGGDEFIIVQIINSISDAEKLAGKICTTLNHPIKYKEDDLFIGASIGISVYPEDGKDT- 605

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               ST++  AD A+Y AKK+G  +   +S
Sbjct: 606 ----STLMKNADAAMYAAKKNGGYKYEVYS 631


>gi|53805133|ref|YP_113023.1| GGDEF domain-containing protein [Methylococcus capsulatus str.
           Bath]
 gi|53758894|gb|AAU93185.1| GGDEF domain protein [Methylococcus capsulatus str. Bath]
          Length = 385

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 98/190 (51%), Gaps = 16/190 (8%)

Query: 79  SLLLGYISGSILKELFISYN---RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128
           ++L+G + GS+   L ++      + QL+  D L+ + N   F       +    +    
Sbjct: 196 AILVGNVLGSLCFGLIVAEELNAELHQLASFDSLTRIYNRRVFENLATDELLRARTKRVP 255

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +S++  DID+FKQ+ND  GH  GD  +  +++ +         + R GGEEF      ++
Sbjct: 256 VSLLMIDIDHFKQVNDRHGHAAGDAALVRVAETMEESLRHRDLLCRYGGEEFGVLLPATA 315

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALY 245
             +A  +A  LR    ++   +  G +I +T+S G+A  C + P   +S + + AD+ALY
Sbjct: 316 RAQALRIAERLRLATMHAGF-LYGGEAIPLTVSIGVA--CIEGPPYDLSLLKHDADRALY 372

Query: 246 VAKKSGRNRV 255
           VAK++GRNRV
Sbjct: 373 VAKQAGRNRV 382


>gi|77460887|ref|YP_350394.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1]
 gi|77384890|gb|ABA76403.1| putative GGDEF domain membrane protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 501

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 14/188 (7%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           L L ++    L+    +   ++QL+  D L+G+ N      SL           + LS++
Sbjct: 315 LWLTWLLARELRLRQRAERELAQLAATDALTGVANRRMLDQSLRHEWFRAQRSGKPLSLL 374

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQE 191
             D D+FK  ND  GH  GD+ +  L+  +      P   V R GGEEF+     +    
Sbjct: 375 MIDADHFKAFNDRHGHQAGDQALRELARVITTNVRRPADLVARYGGEEFSVILAETDSVG 434

Query: 192 AAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAK 248
           A  +A  +R  +E  S +N    P   +T+S GI+       IS   +++ AD+ALY AK
Sbjct: 435 AQQIAEHIRAAVEQLSSVNEDQSP---MTVSIGISTWTATSEISLEQLLFAADKALYQAK 491

Query: 249 KSGRNRVV 256
           + GRNRVV
Sbjct: 492 EGGRNRVV 499


>gi|320155563|ref|YP_004187942.1| pole remodelling regulatory diguanylate cyclase [Vibrio vulnificus
           MO6-24/O]
 gi|319930875|gb|ADV85739.1| pole remodelling regulatory diguanylate cyclase [Vibrio vulnificus
           MO6-24/O]
          Length = 404

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 5/159 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           N + +++  D L+GL N     S   +  E   I   DID+FK++ND +GH  GD  +  
Sbjct: 249 NELYRMANQDALTGLWNRRYLFSQSCNSCELRHIAMLDIDHFKKVNDTYGHDGGDIALKT 308

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +++ L + F   + V R GGEEF   +  S +     L + +R+ +E + I      +IH
Sbjct: 309 VANILKIYFPGEI-VARFGGEEFCIQSCQSYDDFVTRLEH-MRQRVEKTTI-THKAHNIH 365

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ITIS G+A    ++ +   I  AD  LY AK +GRN+VV
Sbjct: 366 ITISIGVASL--QDELENQIKEADGYLYQAKANGRNQVV 402


>gi|315643935|ref|ZP_07897105.1| diguanylate cyclase [Paenibacillus vortex V453]
 gi|315280310|gb|EFU43599.1| diguanylate cyclase [Paenibacillus vortex V453]
          Length = 370

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 97/199 (48%), Gaps = 9/199 (4%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNE 127
           V+ ++ I +L  YI  S   +LF+   + ++   +  L  L      +S        ++E
Sbjct: 170 VLATVVIYMLTEYIHTS--NKLFLQMKKNAETDHLTSLHNLRQFEQLLSERFLEAQHFSE 227

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           +L ++  DID+FK+IND +GH  GD V+  LS  L     +   V R GGEEF+     +
Sbjct: 228 RLGVLVVDIDHFKKINDTYGHAAGDVVLQQLSKVLREHSRSFDEVSRNGGEEFSVLVPEA 287

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQAL 244
           +  E A +A  +R  +E     +  G  + IT+S G A   +    +    ++ +AD  L
Sbjct: 288 TIDETAAIAERIRAAVERHVFVLEDGTRLRITVSIGAAVHPDTVRSKDAKELLQQADHEL 347

Query: 245 YVAKKSGRNRVVCFSDIEN 263
           Y AK SGRNRV    +I +
Sbjct: 348 YRAKNSGRNRVCSAVEIND 366


>gi|284053398|ref|ZP_06383608.1| signal transduction histidine kinase [Arthrospira platensis str.
            Paraca]
          Length = 1042

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 60/197 (30%), Positives = 97/197 (49%), Gaps = 20/197 (10%)

Query: 76   ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEK 128
            +T  L +    G +  +L I++  + ++  +D L+G+ N   F          L    + 
Sbjct: 841  LTEQLAIAIQQGELYHQLQIAHQELEKVYNLDALTGIPNRRHFDHVLQHEWLQLQREQQP 900

Query: 129  LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187
            LSI+  DIDYFK  ND +GH  GDK +  ++D L      P   V R GGEEF    L +
Sbjct: 901  LSIIMCDIDYFKCYNDTYGHIAGDKCLEKVADALKKCLKRPRDLVARYGGEEF-VILLPN 959

Query: 188  SEQEAAILANDLRKIIENSQINISSGPSI------HITISAGIAER--CHKEPISTIIYR 239
            +  E AI   ++ + I+ +   ++  P         +T+S GIA +    ++  + +I+ 
Sbjct: 960  TPTEGAI---EISQQIQEAVFELNMEPGAIPANFQRVTMSMGIASQIPTPQQSPTQLIFT 1016

Query: 240  ADQALYVAKKSGRNRVV 256
            AD ALY AK +GRN+ V
Sbjct: 1017 ADCALYQAKNNGRNQYV 1033


>gi|254459022|ref|ZP_05072445.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207084293|gb|EDZ61582.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 829

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 119/262 (45%), Gaps = 28/262 (10%)

Query: 16  EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTP-FYGLEYILVENLSLVII 74
           +K L +       I F I    FI +++ I N  +  I L     G+E I   N    I 
Sbjct: 310 DKTLRNNRQSLVAILFFIIIVTFITSLVIINN--MLSIPLKKILNGIEIISKGNYENRI- 366

Query: 75  SITISLLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GS 124
            IT    LG IS    ++  E+     ++ +L+ +D L+ + N   FI +L         
Sbjct: 367 DITSKDELGAISSQFNNMADEIAKRETQLDELAHVDPLTKIPNRVMFIETLEKSISRAKR 426

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--A 182
            N KL++ F D+D FK +ND  GH VGDK++  ++  L +V      + R+GG+EF    
Sbjct: 427 LNTKLAVFFLDLDDFKNVNDTLGHYVGDKLLIEIAKNLSIVMRESDTISRIGGDEFNILI 486

Query: 183 AALGSSEQEAAILANDLRKI-----IENSQINISSGPSIHITISAGIAERCHKEPISTII 237
             L S      I    ++++     IEN+ I IS    I I    G       E  +T++
Sbjct: 487 EDLESLSHIGEIAEKFIKQMTIPLYIENNAITISGSIGISIYPDDG-------EDTTTLL 539

Query: 238 YRADQALYVAKKSGRNRVVCFS 259
             AD A+Y AK +GRN+   FS
Sbjct: 540 KNADLAMYKAKDNGRNQYSFFS 561


>gi|187920623|ref|YP_001889655.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
 gi|187719061|gb|ACD20284.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
          Length = 604

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 92/187 (49%), Gaps = 23/187 (12%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           +  L      +  L+  D L+GL N   F+  L +         E L+++F D+D FKQI
Sbjct: 396 MDALHAKQRELVHLATHDVLTGLPNRVLFMEKLENSIDEATRREEGLAVLFVDLDRFKQI 455

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG--SSEQEAAILANDLR 200
           ND FGH VGDKV+  ++ +L  V  +   V RLGG+EF     G  S+E   AI +  + 
Sbjct: 456 NDQFGHAVGDKVLVAVARRLKQVLCSADVVARLGGDEFIVLIEGPRSAEAAPAIASRIMA 515

Query: 201 KIIENSQIN---ISSGPSIHITI---SAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            + E  Q++   ++ G SI I+     +G AE         ++  AD A+Y AK  GR  
Sbjct: 516 ALNEELQVDGQGMTVGASIGISQFPDDSGTAEE--------LLLNADAAMYAAKSGGRCA 567

Query: 255 VVCFSDI 261
            + + D+
Sbjct: 568 YMRYHDV 574


>gi|28900943|ref|NP_800598.1| c-di-GMP phosphodiesterase A-like protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153836713|ref|ZP_01989380.1| biofilm architecture maintenance protein MbaA [Vibrio
           parahaemolyticus AQ3810]
 gi|260366157|ref|ZP_05778617.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus K5030]
 gi|260879799|ref|ZP_05892154.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus
           AN-5034]
 gi|260894473|ref|ZP_05902969.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus
           Peru-466]
 gi|28809389|dbj|BAC62431.1| c-di-GMP phosphodiesterase A-related protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149750062|gb|EDM60807.1| biofilm architecture maintenance protein MbaA [Vibrio
           parahaemolyticus AQ3810]
 gi|308086383|gb|EFO36078.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus
           Peru-466]
 gi|308092157|gb|EFO41852.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus
           AN-5034]
 gi|308114908|gb|EFO52448.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus K5030]
 gi|328470846|gb|EGF41757.1| c-di-GMP phosphodiesterase A-like protein [Vibrio parahaemolyticus
           10329]
          Length = 787

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 22/189 (11%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFDIDYFKQIN 143
            + +EL + Y +  +L+  D L+ L N    H      L S    L +++ D+D FK +N
Sbjct: 324 DMYEELNVIYKKTKRLAETDHLTQLANRHRFHQLATRELASPPSHLWVIYVDLDNFKYVN 383

Query: 144 DNFGHPVGDKVIAFLS-------DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA--- 193
           D +GH +GD ++   S        +    + +P F  RL G+EF  A L SS ++     
Sbjct: 384 DKYGHELGDNLLKVFSTHIKNACQKFSQQYDSPCFGARLSGDEF--AILLSSNKDVGSIP 441

Query: 194 -ILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250
            +LA +L K I N SQ   ++ P   +T S GIA+     + I+ ++  AD A+Y AK++
Sbjct: 442 DLLAKELLKPISNLSQTWANAFP---VTASVGIAQYPQDGQDIAKLLSNADAAMYQAKRA 498

Query: 251 GRNRVVCFS 259
           G+N+   +S
Sbjct: 499 GKNQYAYYS 507


>gi|332306817|ref|YP_004434668.1| diguanylate cyclase with TPR repeats [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174146|gb|AEE23400.1| diguanylate cyclase with TPR repeats [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 721

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 89/191 (46%), Gaps = 26/191 (13%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVF------------------ 133
           EL  +Y  +  +S  D L+G+ N     + +G+  EK   V+                  
Sbjct: 491 ELQAAYQEMEAISLTDKLTGVHNRRFLENQIGADLEKSQRVYTDWHDGKTPQPQQADIVV 550

Query: 134 --FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK++ND +GH  GD+V+  L+ +L +VF    ++ R GGEEF   A   +  +
Sbjct: 551 FMIDMDHFKRVNDEYGHGAGDEVLQQLTQRLALVFRQSDYIVRWGGEEFVGVARFINRSD 610

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALY 245
           A+ LA  L + +  +   +S+G S + T S G A               T+I  AD  LY
Sbjct: 611 ASNLAQRLLEEVGATPFTLSNGASTYHTCSVGYACSPRALHHNQANDWQTLIALADTCLY 670

Query: 246 VAKKSGRNRVV 256
            AK +GRN  V
Sbjct: 671 EAKNNGRNAWV 681


>gi|291570883|dbj|BAI93155.1| PleD-like protein [Arthrospira platensis NIES-39]
          Length = 1040

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 60/197 (30%), Positives = 97/197 (49%), Gaps = 20/197 (10%)

Query: 76   ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEK 128
            +T  L +    G +  +L I++  + ++  +D L+G+ N   F          L    + 
Sbjct: 839  LTEQLAIAIQQGELYHQLQIAHQELEKVYNLDALTGIPNRRHFDHVLQHEWLQLQREQQP 898

Query: 129  LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187
            LSI+  DIDYFK  ND +GH  GDK +  ++D L      P   V R GGEEF    L +
Sbjct: 899  LSIIMCDIDYFKCYNDTYGHIAGDKCLEKVADALKKCLKRPRDLVARYGGEEF-VILLPN 957

Query: 188  SEQEAAILANDLRKIIENSQINISSGPSI------HITISAGIAER--CHKEPISTIIYR 239
            +  E AI   ++ + I+ +   ++  P         +T+S GIA +    ++  + +I+ 
Sbjct: 958  TPTEGAI---EISQQIQEAVFELNMEPGAIPANFQRVTMSMGIASQIPTPQQSPTQLIFT 1014

Query: 240  ADQALYVAKKSGRNRVV 256
            AD ALY AK +GRN+ V
Sbjct: 1015 ADCALYQAKNNGRNQYV 1031


>gi|238794159|ref|ZP_04637775.1| Predicted diguanylate cyclase [Yersinia intermedia ATCC 29909]
 gi|238726557|gb|EEQ18095.1| Predicted diguanylate cyclase [Yersinia intermedia ATCC 29909]
          Length = 366

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 21/243 (8%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI-ISITISL-LLGY------- 84
            F+IF  + I +++ FL +   T    L  IL+++   +  I  TI L L+G+       
Sbjct: 112 LFTIFFISTIALSDNFLAFCLHTAPSALTVILLDDFQNIFRILFTIMLPLIGFSLHHLML 171

Query: 85  -----ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFD 135
                 +  ++  L+    + S LS ID L+ L N     + L +   +      ++  D
Sbjct: 172 RRSDDFTRKLVARLYNEREKFSDLSMIDPLTSLYNRRGLENKLETLLAQSPGNHYVLLLD 231

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK  NDN+GH +GD+ +  ++  +     +   V R GGEEF       SE+ A+ L
Sbjct: 232 IDHFKAYNDNYGHTMGDQALVRVAAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYASQL 291

Query: 196 ANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           A  +R+ +    I    +   S  +T+SAGI+       +++ +  AD+ALY AKK+GRN
Sbjct: 292 AERVRQRVLGLDIPHVFNHKVSTTVTLSAGISP-LQAYDLASSLKAADEALYRAKKNGRN 350

Query: 254 RVV 256
           +V 
Sbjct: 351 KVA 353


>gi|119472673|ref|ZP_01614643.1| putative GGDEF domain membrane protein [Alteromonadales bacterium
           TW-7]
 gi|119444798|gb|EAW26100.1| putative GGDEF domain membrane protein [Alteromonadales bacterium
           TW-7]
          Length = 342

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 104/220 (47%), Gaps = 9/220 (4%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL-FISYNRISQ 102
            I++  L +  + P Y    +   N   +I+++ +S +  +    I + + + +   I  
Sbjct: 117 LISSFCLLFASVIPLYSFLSLGGANSLHLIVNLGLSYMTIWTVSHIYEAMRYSNQETILN 176

Query: 103 LSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           L+  D L+   N  A  S        +E + +   DID+FK++ND +GH  GD V+  L+
Sbjct: 177 LALRDPLTKAFNRRALQSRFSKQTVIDEPVCVALIDIDFFKKVNDKYGHDAGDAVLTQLT 236

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           +  V  F     V R+GGEEF    + + +Q A  L N L K +E+         S+ IT
Sbjct: 237 ELFVEKFKEDN-VFRMGGEEF-VVVINTDQQAAYDLINCLIKTVESHHFTYEK-DSLKIT 293

Query: 220 ISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
           IS G  E        +S I+  AD  LY+AK +GRN  VC
Sbjct: 294 ISIGFEELVTDSFVDLSKILKAADGYLYIAKDNGRNCAVC 333


>gi|95930360|ref|ZP_01313097.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95133612|gb|EAT15274.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 505

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/179 (36%), Positives = 97/179 (54%), Gaps = 19/179 (10%)

Query: 91  KELFISYNRISQLSRIDCLSGLLN----HSAFISSL---GSYNEKLSIVFFDIDYFKQIN 143
           +EL      +S+L+  D L+GL N    H  F   L     Y    +++ FDID FK IN
Sbjct: 325 QELATVNTELSRLAFEDSLTGLYNLRYFHDYFDRELQRSARYGTVFTLLMFDIDDFKAIN 384

Query: 144 DNFGHPVGDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           D+ GH  GD+V   IA LS  ++    T + V R GGEEFAA    +S  +A  +AN LR
Sbjct: 385 DSHGHQAGDQVLIEIANLSRNMLR--NTDVMV-RYGGEEFAALLPETSLPQAHEIANRLR 441

Query: 201 KIIENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + IE   + + +   + +T+S G+A    E+  K   + +I  AD+ LY +KK+G+NR+
Sbjct: 442 QEIEKLTV-VWNNKKLQVTVSMGLAFYDPEQGTKNK-NELIDIADKGLYQSKKAGKNRI 498


>gi|94501242|ref|ZP_01307764.1| PAS:GGDEF protein [Oceanobacter sp. RED65]
 gi|94426669|gb|EAT11655.1| PAS:GGDEF protein [Oceanobacter sp. RED65]
          Length = 312

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 11/171 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           L++L  +Y  + Q+SR D L+G LN  AF   L    E+       +++VF D+D FKQ+
Sbjct: 145 LQQLNEAYAELEQMSRKDGLTGALNIRAFKEELLDAMERYHRSGQNVTLVFIDLDDFKQV 204

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH VGD+V+   +  L+        V R GG+EFA     ++EQEA      L   
Sbjct: 205 NDQYGHIVGDEVLTTFAKTLLNQSRRCDAVARYGGDEFAMLLDDTTEQEALDFCKRLGSE 264

Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGR 252
           IE       +G +  ++ S G+++ + +   +      ADQ +Y  K+S +
Sbjct: 265 IE---FETGNGKTKSMSFSFGMSQLKKNHRTVEDWFAEADQHMYRDKESSK 312


>gi|317057842|ref|YP_004106309.1| diguanylate cyclase [Ruminococcus albus 7]
 gi|315450111|gb|ADU23675.1| diguanylate cyclase [Ruminococcus albus 7]
          Length = 336

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 91/185 (49%), Gaps = 10/185 (5%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIV 132
           I  S L+ YI+  I + +  S  +++Q++  D L+ L N    I  L   N   E   + 
Sbjct: 157 IVFSFLIIYINKQI-RSIINSEIKLTQMAHKDRLTDLYNRHYMIDRLTEVNSMKETAVLA 215

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQE 191
             DID FK IND +GH  GD+V+  +S +L     G    + R GGEEF    L +++ E
Sbjct: 216 MADIDDFKTINDVYGHNAGDEVLKVISKKLKDTCAGCD--IARWGGEEF--LILFNNDDE 271

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              +   LR  I +S +    G SI ITI+ G+A       +   I   D  LY  KKSG
Sbjct: 272 VMKIIEKLRSDIASSPVEF-EGKSIPITITVGVAPARKGRTLDEWIQVVDNKLYYGKKSG 330

Query: 252 RNRVV 256
           +N+V+
Sbjct: 331 KNKVI 335


>gi|126457325|ref|YP_001074228.1| diguanylate cyclase [Burkholderia pseudomallei 1106a]
 gi|126231093|gb|ABN94506.1| diguanylate cyclase [Burkholderia pseudomallei 1106a]
          Length = 462

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 11/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           + LF ++  + + +  D L+ + N S F             +N  L++V  D+D+FKQ N
Sbjct: 275 RRLFDAHASLMRTASHDALTMVYNRSYFNEQFERAFHYARRHNTLLALVMVDVDHFKQYN 334

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD  +A ++  L  V G    FV R GGEEFA    G+ E+ AA +A   R+ 
Sbjct: 335 DTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPGADERGAATIAERARQA 394

Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
           +E  +I   + P  ++T+SAG A       E    +I  AD ALY AK  GRN
Sbjct: 395 VERLRIAADTAPG-YVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRN 446


>gi|323528830|ref|YP_004230982.1| diguanylate cyclase [Burkholderia sp. CCGE1001]
 gi|323385832|gb|ADX57922.1| diguanylate cyclase [Burkholderia sp. CCGE1001]
          Length = 477

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 92/176 (52%), Gaps = 13/176 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
            L  + + + +L+  D L+G+ N  AF ++L ++ ++       LS++  DID+FK  ND
Sbjct: 291 RLAAALDELKRLATTDPLTGVANRRAFEAALTAHWQRASHDGSTLSLLMIDIDFFKLFND 350

Query: 145 NFGHPVGDKVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
            +GH  GD+ +  +++ L   V  G+   V R GGEEF      ++   AA +A  +   
Sbjct: 351 RYGHVEGDRCLVLVAECLARAVRRGSDQ-VARYGGEEFVVLLPDTNAASAAHVARRMCDA 409

Query: 203 IENSQINISSGPSIH-ITISAGIAERC-HKEPISTIIYR-ADQALYVAKKSGRNRV 255
           +    +     PS   ITIS G+A R       +T++ R AD ALY+AK +GR RV
Sbjct: 410 VAALCVPNEGSPSFRKITISVGVASRVIDAGSETTVLTRAADHALYLAKAAGRGRV 465


>gi|206601953|gb|EDZ38435.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptospirillum sp. Group II '5-way CG']
          Length = 878

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/184 (30%), Positives = 93/184 (50%), Gaps = 15/184 (8%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LS 130
           + LLL  ++  + +E      +I +L+ ID L+GLLN +A I  L +  EK       ++
Sbjct: 429 VVLLLKDVTAKMERE-----RQIWRLANIDDLTGLLNRTALIERLANEMEKSRRNQGAMA 483

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F D D FK IND  GH  GD  +  +  +L         V RLGG+EF       S++
Sbjct: 484 LLFLDFDDFKGINDTLGHSAGDSFLKVIGHRLSGSVRPTDIVARLGGDEFVVVVSLESDE 543

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKK 249
           +    A  +  I+  + ++I S  ++  ++S GIA      E +  ++ +AD A+Y AK 
Sbjct: 544 KILSFAQKILDIL-GAPVSIQS-QTVQTSVSVGIATYPRDAESVEDLLRKADIAMYQAKN 601

Query: 250 SGRN 253
            G+N
Sbjct: 602 KGKN 605


>gi|85712210|ref|ZP_01043262.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Idiomarina
           baltica OS145]
 gi|85694018|gb|EAQ31964.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Idiomarina
           baltica OS145]
          Length = 450

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 83/163 (50%), Gaps = 8/163 (4%)

Query: 98  NRISQLSRIDCLSGLLNH---SAFISSLGSYN-EKLS---IVFFDIDYFKQINDNFGHPV 150
           +R+ +L+  D L+GL N    + F   L   N E+L+    V  DID+FKQ+ND FGH  
Sbjct: 284 DRLERLAYTDFLTGLSNRLFINEFFERLVYQNRERLNHYYCVLVDIDHFKQLNDQFGHDA 343

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  ++ +      +     R+GGEEF        + + A +   LRK IEN +I  
Sbjct: 344 GDSVLQAVAIEFTDSLRSDDVCARVGGEEFMLLIHADDKVDIANIVERLRKNIENLKIE- 402

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
                I  T+S G+ +   ++  +    RAD+ALY +K  GRN
Sbjct: 403 HDDEIITTTVSIGVTKLQEQDSFNLAYKRADKALYQSKSDGRN 445


>gi|114563098|ref|YP_750611.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114334391|gb|ABI71773.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 340

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 3/127 (2%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  DID FK  ND FGH +GDKV+A+++  +         V R GGEEF      +  
Sbjct: 209 SLLMIDIDNFKMFNDTFGHLIGDKVLAYVALAMKHTVKGDDLVARYGGEEFVVMLPNAKL 268

Query: 190 QEAAILANDLRKIIENSQINISSGPSI---HITISAGIAERCHKEPISTIIYRADQALYV 246
            +A  +A  +R+ I   Q++I         HIT+S G+A     + + T++ RAD+ LY+
Sbjct: 269 IDAVNVAEKIRERIALKQLSIGKEKKQNLGHITVSIGVATIQTGDDVDTLLSRADEQLYI 328

Query: 247 AKKSGRN 253
           AK +G+N
Sbjct: 329 AKAAGKN 335


>gi|327194235|gb|EGE61099.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 309

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 67/125 (53%), Gaps = 1/125 (0%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +  FDID FKQIND FGH  GD V+   + ++          GR+GGEEF      +S +
Sbjct: 183 LAVFDIDKFKQINDRFGHHAGDLVLRDFAHRIHQNVRRNDCFGRVGGEEFLLVMPSTSPE 242

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +A  +   +  +I  S+  ++  P    T SAGIA     +  S +  RADQALY AK S
Sbjct: 243 DALAMVERMLTVIRFSRP-LADSPDFSYTCSAGIAASLPSDSASELYRRADQALYDAKMS 301

Query: 251 GRNRV 255
           GR+RV
Sbjct: 302 GRDRV 306


>gi|313618171|gb|EFR90255.1| ggdef domain-containing protein [Listeria innocua FSL S4-378]
          Length = 375

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 100/201 (49%), Gaps = 15/201 (7%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-- 123
           VE +   ++    +LL+ Y    I K   +  N +++ +  D L+ L N   F       
Sbjct: 171 VEIVEYFLLFFVTALLVFYACNYIDKSNLVIQN-LTETAMTDSLTNLSNMRFFTQQFAWI 229

Query: 124 -----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGG 177
                   + LS+   DID+FK+IND  GH  G+ V+A  S  L    F       R+GG
Sbjct: 230 FNKSQKRKKALSLFIIDIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGG 289

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPIST 235
           EEFA        ++AA++A+ LR  IE ++   N  SG   ++T+S G+A   +    + 
Sbjct: 290 EEFAVLLQNVGTEQAALIADFLRDEIERAKFPYNPVSG---NVTVSIGVASMGYNYRTTE 346

Query: 236 IIYR-ADQALYVAKKSGRNRV 255
            ++  ADQALY AK++GRN++
Sbjct: 347 SLFEAADQALYQAKQNGRNQI 367


>gi|304412210|ref|ZP_07393819.1| diguanylate cyclase with GAF sensor [Shewanella baltica OS183]
 gi|307306954|ref|ZP_07586694.1| diguanylate cyclase with GAF sensor [Shewanella baltica BA175]
 gi|304349476|gb|EFM13885.1| diguanylate cyclase with GAF sensor [Shewanella baltica OS183]
 gi|306910532|gb|EFN40962.1| diguanylate cyclase with GAF sensor [Shewanella baltica BA175]
          Length = 599

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 10/177 (5%)

Query: 89  ILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQIND 144
           +L++  +S N ++ +++  D L+GL N   F   L +  +      +   D+DYFK  ND
Sbjct: 413 VLQQALVSANAQLKEMAETDELTGLANRRPFTERLETVLQADIPAGLFMLDVDYFKSYND 472

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
            +GH  GD V+  ++D L      P    + R+GGEEFA      +  +   +A  L  +
Sbjct: 473 TYGHLEGDVVLKRVADALAQCDILPHNALLARIGGEEFALVVEHVTPAQLTAIATQLCYL 532

Query: 203 IENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E   I   + P   +TIS G      ++     ++ ++ RAD  LY AK  GRNRV
Sbjct: 533 VEQLNIPHQASPLAVVTISIGSVFLPLDKVSGLKMADVLRRADVCLYRAKDKGRNRV 589


>gi|239905136|ref|YP_002951875.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
 gi|239795000|dbj|BAH73989.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
          Length = 418

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 92/172 (53%), Gaps = 9/172 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           E+     ++ + +  D L+GL N   F        + L   +  +++   DID+FK++ND
Sbjct: 246 EMLEYIQKLRETAIRDPLTGLYNRRHFFEAAKTLHADLARGDTPMTLAMIDIDFFKKVND 305

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+  ++  L   F       RLGGEEF   A G S Q+A    +DLR  IE
Sbjct: 306 TYGHAAGDEVLKHVAQGLGNRFRGHDVAARLGGEEFCVLARGLSGQQAMAAFDDLRNSIE 365

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S+   +   +I +T+S GI ++ H   +  ++  AD ALY AK++GRNRV+
Sbjct: 366 RSKAK-AGKTAIGVTVSIGICDKPHG-SVDAMLAAADAALYKAKRTGRNRVL 415


>gi|167625186|ref|YP_001675480.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167355208|gb|ABZ77821.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 627

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 90/174 (51%), Gaps = 18/174 (10%)

Query: 95  ISYNRI-SQLSRIDCLSGLLNHSA-FISSLGSYNEK------LSIVFFDIDYFKQINDNF 146
           I  NR+ S L+  D L+ L N    +I +   + E       LS++ FD D+FK IND F
Sbjct: 456 IQKNRLLSALALTDDLTQLPNRRYIYIKAQHCFEEAQKTDRPLSVIAFDADHFKLINDKF 515

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIEN 205
           GH VGD  +  L+D    +  +     R+GGEEF        + +A  +A  L R++ EN
Sbjct: 516 GHEVGDHALELLADTCRSLISSTYETARVGGEEFLIVLTDIDKPQAFEIAQSLVRRVSEN 575

Query: 206 SQINISSGPS-IHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRV 255
              + S+ P   ++TISAG+A  C       +S ++ RAD ALY AK  GRN+ 
Sbjct: 576 ---DFSAFPQGFNMTISAGVA--CLSSTDSKLSQLLKRADDALYQAKSLGRNQA 624


>gi|160876271|ref|YP_001555587.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160861793|gb|ABX50327.1| diguanylate cyclase [Shewanella baltica OS195]
          Length = 579

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 94/196 (47%), Gaps = 18/196 (9%)

Query: 74  ISITISLLLGYISGSILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGS-------Y 125
           + +T +L L  +  S+  E   SY  ++  ++  D L+G  N       L         +
Sbjct: 377 MPVTDNLELQQMVNSL--ETLKSYAAQVKGMAETDGLTGCYNRRYLDIQLQKELEYARDH 434

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAA 184
           N  L I+ FDID FKQ ND +GH  GD+ +  + +    +   P   + R GGEEF    
Sbjct: 435 NMPLGIILFDIDNFKQFNDRYGHVAGDQCLKNIVNAAKSILKRPTDMLARYGGEEFMIVL 494

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIAERCHKEP----ISTIIYR 239
             S  +E    A  LR+ I + +I     P   I TISAGI   C + P     +++I R
Sbjct: 495 PSSHLEEVYQFAERLREKIISLEIPHEDSPHAGILTISAGIT--CWQLPQQLDANSLINR 552

Query: 240 ADQALYVAKKSGRNRV 255
           AD+ALY AK +GRNR 
Sbjct: 553 ADEALYHAKLTGRNRT 568


>gi|163851936|ref|YP_001639979.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163663541|gb|ABY30908.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 405

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 121/268 (45%), Gaps = 42/268 (15%)

Query: 9   LSIWLCHEKNLESFSPHT---------FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY 59
           L+IW   ++ L S  P           + I   + F++ I   + IA         +P++
Sbjct: 136 LTIWQGRDEPLVSRYPALVLLATYAGLYWIRLPLAFTLPIPASVAIA---------SPWF 186

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
            +         L       S+ + ++  ++ KE      R++  +  D L+G+ N  A +
Sbjct: 187 AI---------LCFAGTLFSVAIAFVFMALTKERAEREQRLA--AETDSLTGIANRRALV 235

Query: 120 SSLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIA---FLSDQLVVVFGTPMFV-G 173
           +    +          FD+D+FK +ND +GH VGD V+A    ++D L+     P  V G
Sbjct: 236 AGAERHLAVAPAALLLFDLDHFKAVNDRYGHSVGDAVLAAFCHVADPLL----PPGAVFG 291

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEP 232
           R+GGEEFA       E+ A  +A D+R  I  ++      P + I +S G+A        
Sbjct: 292 RMGGEEFACLLPRLDERAAMRIAEDVRAAI--ARFAHPDYPELVIRVSVGVAAESQIGGS 349

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  ++ RAD ALY AK +GR++V+   +
Sbjct: 350 LDYLLRRADDALYQAKDAGRDQVIAAGE 377


>gi|152994924|ref|YP_001339759.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150835848|gb|ABR69824.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 323

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 2/130 (1%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            E+  ++  DID+FK +ND FGH VGD V+  +++ L     +   V R+GGEEF     
Sbjct: 185 QEETRLLIIDIDHFKSVNDEFGHDVGDSVLIEMTELLHYCINSNQ-VYRIGGEEFLIVLN 243

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
             ++ +A   A  +RK +ENS I  +   +I IT+S GIA+    +     +  AD+ LY
Sbjct: 244 NYTQTQAFDFAETIRKTVENS-IFRTHQQNIKITVSIGIAQLKKGQSFREFLRVADKNLY 302

Query: 246 VAKKSGRNRV 255
            AK  GRN V
Sbjct: 303 TAKNEGRNLV 312


>gi|16329397|ref|NP_440125.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
 gi|1651878|dbj|BAA16805.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
          Length = 452

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           EL  +  ++  L+ ID L+ + N   F   L    ++       LS++  DIDYFK  ND
Sbjct: 276 ELQAANQQLQLLANIDGLTHIANRRRFDEYLAQEWQRHCREQKPLSLILVDIDYFKAYND 335

Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  +++ LV +       V R GGEEF      ++ Q+A  +A ++ + I
Sbjct: 336 LYGHQKGDDCLQKVANTLVDIAKRITDLVARYGGEEFVIVLPNTNRQDALAMAENMLQAI 395

Query: 204 ENSQI-NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               I +  S  S ++TIS G++      ++ I  II  ADQALY AK  GRNR + 
Sbjct: 396 AALAIPHEGSSVSKYVTISIGVSSIIPMPEDTIERIISEADQALYSAKSQGRNRAIA 452


>gi|330938536|gb|EGH42121.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 424

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 100/228 (43%), Gaps = 32/228 (14%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F+ L    +   +L I+   + L+   I+ ++  E +       Q++  D L+GL    A
Sbjct: 198 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 247

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
               +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        R GG
Sbjct: 248 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAYRYGG 307

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINI-------------------SSGPSIHI 218
           EEFA      S  E       +R+ I + +I +                   +   S+ +
Sbjct: 308 EEFAIVFAAKSIDECMPHLEAIRETIASYEIQLRNKNDRPQDDQQGRQRRSGAQAGSVSV 367

Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           T+S G+AER   H+ P   ++  ADQALY AK +GRN VV +  +   
Sbjct: 368 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 414


>gi|257485998|ref|ZP_05640039.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330986057|gb|EGH84160.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331010362|gb|EGH90418.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 527

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 15/172 (8%)

Query: 107 DCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L      +  E+  LS++  D D+FK+ ND++GH  GD+ +  L+
Sbjct: 336 DKLTGLANRRRFDQFLEVEFKRARRERSLLSLILIDADHFKRYNDHYGHLAGDECLVALA 395

Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +      P  V  R GGEE A    G+ E  A  +A ++ + I + QI   + P   +
Sbjct: 396 RVVEQCIRRPGDVAARYGGEEIAVVLPGTDESSARQVAENILQAIRDEQIEHPASPFGIV 455

Query: 219 TISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           T+S G+A     +R   +   ++I  AD+ALY AK  GRNRV   S+I  +T
Sbjct: 456 TVSLGVATFVGTDRQLDQ--RSLIELADRALYAAKSQGRNRVNVASEIATST 505


>gi|253689810|ref|YP_003019000.1| diguanylate cyclase with PAS/PAC and GAF sensors [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756388|gb|ACT14464.1| diguanylate cyclase with PAS/PAC and GAF sensors [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 608

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 74/157 (47%), Gaps = 11/157 (7%)

Query: 107 DCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           D L+GL N S+F     ++          +K  +   DID FK IND +GH  GD V+  
Sbjct: 450 DFLTGLPNRSSFFEQANAFFLHNQQNQQTDKSCLAIIDIDLFKNINDQYGHLAGDAVLKE 509

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           L+  + +       V RLGGEEF       S Q A +    +RK IE   +      ++H
Sbjct: 510 LAVLMRMSLRQEDLVARLGGEEFIILLKDISYQTAMMTIERIRKAIEQHTLEYDR-QTLH 568

Query: 218 ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
            TISAGIA  R     +   I  AD  LY AK+ GRN
Sbjct: 569 FTISAGIAAYRSDLASVEDWIQLADANLYAAKRQGRN 605


>gi|226947588|ref|YP_002802679.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium
           botulinum A2 str. Kyoto]
 gi|226842632|gb|ACO85298.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium
           botulinum A2 str. Kyoto]
          Length = 843

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 14/162 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +I  L+  D L+GL N    I ++        NEK +++F D+D+FK IND  GH VGD 
Sbjct: 418 KILGLAYYDSLTGLSNRKKIIETINKTINNYENEKFAVLFIDLDHFKSINDTLGHDVGDY 477

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQIN 209
           V+  +S +  ++      +GRLGG+EF       ++  +E+ A  +   L   I+  + +
Sbjct: 478 VLEKVSARFKMLLSPKHKIGRLGGDEFIIVQNITSISDAEKLACKICTTLNHSIKYKEDD 537

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           +  G SI I+I     +       ST++  AD A+Y AKK+G
Sbjct: 538 LFIGASIGISIYPEDGKDT-----STLMKNADAAMYAAKKNG 574


>gi|170747668|ref|YP_001753928.1| diguanylate cyclase [Methylobacterium radiotolerans JCM 2831]
 gi|170654190|gb|ACB23245.1| diguanylate cyclase [Methylobacterium radiotolerans JCM 2831]
          Length = 510

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 104/229 (45%), Gaps = 14/229 (6%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
           I T+  I N+ L    +   +  +  ++  + L +  +TI+L L  + G  L+       
Sbjct: 266 IGTLPLILNVALSTKDVEADWAAKAAIIGGIVLALCGLTIALSL--LFGRELRRREALRA 323

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
            ++ LSR D L+GL N   F  +L           + LS++  D D+FK+ ND +GHPVG
Sbjct: 324 EMAALSRTDVLTGLPNRRCFEDALRRNLDAARRDGQPLSLLIVDADHFKRFNDRYGHPVG 383

Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D ++  L+  L      P   V R+GGEEF      + E  A  +A+ +   +    +  
Sbjct: 384 DAILQGLARCLAASVHRPQDLVSRIGGEEFTLLLPETDEAGALRVADTVHAEVAKLTVES 443

Query: 211 SSGPSIHITISAGIAE----RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   +  +T+S G+A          P+      AD ALY AK  GRN+ 
Sbjct: 444 AGLGAGTVTVSIGLASVRPGSDRSAPLPDPYRLADGALYEAKNGGRNQT 492


>gi|114049198|ref|YP_739748.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113890640|gb|ABI44691.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 571

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 12/238 (5%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           H    YF +  S+F+    F     +FY G   F  L    V  + +++ ++ ++L++ Y
Sbjct: 324 HPIAKYFLLGHSLFVG---FSGLAVMFYKGRAEFNYLSSHGV-GVGIMLEALVLALIIAY 379

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
               +L+E+  S   +   +  D L+ L N   F        +      + ++++  DID
Sbjct: 380 -RIRLLEEIKASQEELKYQAATDSLTQLFNRGHFHKEAQRVYTQASIAQQPMAVIICDID 438

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK++ND +GH +GD+VI  ++  L         V R GGEEF       S  EA + A 
Sbjct: 439 LFKRVNDKYGHLMGDRVIIDIATTLKQHARKCDLVARYGGEEFIMLLHNVSLTEAHLCAE 498

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +R  +        +     +T+S G+A      P+   I  AD ALY AK  GRN V
Sbjct: 499 RIRSAVAALNFTAETQEVFTVTLSLGVATVDFDHPLEHAIKLADDALYCAKHQGRNNV 556


>gi|190895432|ref|YP_001985724.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190699377|gb|ACE93461.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 298

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 82/171 (47%), Gaps = 11/171 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           I  S   EL    NR   ++R+D +     H       GS      +  FDID FKQIND
Sbjct: 136 IKASYTDELTGVANRRFVMARVDDMLAAARHG------GSG----CLAVFDIDKFKQIND 185

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD V+   + ++          GR+GGEEF      +S ++A  +   +  +I 
Sbjct: 186 RFGHHAGDLVLRDFAHRIHQNVRRNDCFGRVGGEEFLLVMPSTSPEDALAMVERMLTVIR 245

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S+  ++  P    T SAGIA     +  S +  RADQALY AK SGR+RV
Sbjct: 246 FSRP-LADSPDFSYTCSAGIAASLPIDSASELYRRADQALYDAKMSGRDRV 295


>gi|187920568|ref|YP_001889600.1| diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans
           PsJN]
 gi|187719006|gb|ACD20229.1| diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans
           PsJN]
          Length = 689

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 15/167 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISS-----LGSYNEK--LSIVFFDIDYFKQINDNFGHPV 150
            +I +L+ +D L+GL N S          L +  ++   +I+F D+D FK IND+ GH V
Sbjct: 253 GQIVRLATLDTLTGLPNRSTLTDRIERAILSARRQRTLFAILFMDLDGFKTINDSLGHSV 312

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILANDLRKIIENSQI 208
           GD+V+   + +L+        V RLGG+EF   A  LGS E  +A+       ++E  ++
Sbjct: 313 GDQVLTAFAQRLLQCVRETDTVARLGGDEFVVLAENLGSREDASALAEG----VLERMRL 368

Query: 209 NI-SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
            + +    + +  S GIA   H  + + T++  AD A+Y AK++GR+
Sbjct: 369 GVWTDSQPLQVMPSIGIALYPHDGDSVETLLKHADAAMYEAKRAGRS 415


>gi|95928296|ref|ZP_01311044.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95135567|gb|EAT17218.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 370

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 15/167 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I++L+  D L+G  N   F       I     Y + LS++  DID+FK IND++GH  GD
Sbjct: 198 IAELAVRDSLTGSFNRGYFNETFPGAIRRAQRYQQSLSLIMCDIDHFKLINDHYGHQTGD 257

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           +VI  ++  L       + ++ R GGEEF      ++ + A ++A  +R+ I + +I   
Sbjct: 258 RVIKSVAQGLAQSLRQGVDWLARYGGEEFVIVLPETNLEGALVVAERMRRSIADQEIACD 317

Query: 212 SGPSIHITISAGIAERCHKEPISTI-----IYRADQALYVAKKSGRN 253
              SI +T S G+A  C  E  S +     I  AD+ LY AKK GRN
Sbjct: 318 P-QSIRLTASFGVAG-CDPEHASMLTGNGMIAAADRCLYQAKKEGRN 362


>gi|241204072|ref|YP_002975168.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240857962|gb|ACS55629.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 427

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 92/173 (53%), Gaps = 12/173 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148
           S   +  L+  D L+G+LN    +       E+       ++++ FD+D+FK++ND FGH
Sbjct: 218 SERHLRALTLTDSLTGVLNRRGLLGYFDGIQERAHNEQRQVAVILFDLDHFKRVNDRFGH 277

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+   +          +F GR+GGEEFAA A  + + EA  +A  +R   E  ++
Sbjct: 278 QSGDAVLTAFARMARQYIPNNIF-GRMGGEEFAAFAAVADQTEAEAIAEAIRT--EFCRL 334

Query: 209 NISSGPSI-HITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
            +S+G +I  +T+S GIA     E  I  +I  AD+ALY AK +GRN  V F 
Sbjct: 335 PVSTGEAIVPVTVSIGIALASSIEANIDKLISAADRALYAAKAAGRNCTVTFG 387


>gi|170722183|ref|YP_001749871.1| diguanylate cyclase [Pseudomonas putida W619]
 gi|169760186|gb|ACA73502.1| diguanylate cyclase [Pseudomonas putida W619]
          Length = 377

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 98/191 (51%), Gaps = 11/191 (5%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQL-SRIDCLSGLLNHSAFIS-SLGSY----- 125
           +++ T SL    ++   LK      +R++ + S  D L+GL N  AF   +L  +     
Sbjct: 180 VVNATQSLSSALVTAWRLKHEMERAHRLAIVASCTDELTGLNNRRAFFDCALAQHTLCKE 239

Query: 126 -NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
            +  ++++  D+D+FKQIND  GH  GD+V+  +   +          GRLGGEEFA   
Sbjct: 240 GHTYVAVLMLDVDHFKQINDTAGHAAGDQVLKRIGTAISASLRDNDIAGRLGGEEFAILL 299

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +    A+  A  LR +I  +++N+ +  ++  +I    A+    E +  ++  AD+A+
Sbjct: 300 PDTPLVTASEFAERLRALI--AKLNVDTQYAVTASIGLAFAKAPASE-LDALLSSADKAM 356

Query: 245 YVAKKSGRNRV 255
           Y AK SGRNRV
Sbjct: 357 YRAKASGRNRV 367


>gi|169343600|ref|ZP_02864599.1| GGDEF domain protein [Clostridium perfringens C str. JGS1495]
 gi|169298160|gb|EDS80250.1| GGDEF domain protein [Clostridium perfringens C str. JGS1495]
          Length = 299

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 73/129 (56%), Gaps = 4/129 (3%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSS 188
           +++  DID FK++ND +GH VGDK++   +  L   +     ++GR GGEEF      ++
Sbjct: 172 TVIMADIDSFKKVNDTYGHLVGDKILRDFAKALNNNIRENSDWIGRYGGEEFIIVLNNTN 231

Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVA 247
            +    +A  LRKIIE  +++   G  S+ IT S G+ E   KE     I  AD+ LY+A
Sbjct: 232 LKNGVKVAEKLRKIIE--KMSFDYGDLSLKITSSFGVCEVSEKEDPFDTIKNADEKLYMA 289

Query: 248 KKSGRNRVV 256
           K +GRN+ V
Sbjct: 290 KMTGRNKTV 298


>gi|153937944|ref|YP_001392710.1| putative diguanylate cyclase [Clostridium botulinum F str.
           Langeland]
 gi|152933840|gb|ABS39338.1| putative diguanylate cyclase [Clostridium botulinum F str.
           Langeland]
 gi|295320691|gb|ADG01069.1| putative diguanylate cyclase [Clostridium botulinum F str. 230613]
          Length = 437

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 93/173 (53%), Gaps = 12/173 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQIND 144
           E + + N+I +LS I  L+  LN  +F+  L         N++ +SIVF D+DYFK+ ND
Sbjct: 256 ENYSANNKIKKLS-ICSLTYALNRGSFMEKLKDEFDDSKKNKRHISIVFIDVDYFKEYND 314

Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           N+GH  GDKV+  +   ++ V       VGR GG+EF          E  ++A ++ K I
Sbjct: 315 NYGHIEGDKVLMKIGKSIINVAKKYSGVVGRYGGDEFIVLLNEVKTSELEVIAVEISKEI 374

Query: 204 ENSQINIS-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
              +I    S  S + T+S G+A    K  E I  +I  AD+ALY +K++GRN
Sbjct: 375 NKLKIKREYSHISKYQTVSIGVASIIPKEEEKIEDLINYADKALYKSKENGRN 427


>gi|85374283|ref|YP_458345.1| sensory box/GGDEF family protein [Erythrobacter litoralis HTCC2594]
 gi|84787366|gb|ABC63548.1| sensory box/GGDEF family protein [Erythrobacter litoralis HTCC2594]
          Length = 909

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 88/185 (47%), Gaps = 13/185 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           SG+ L E   S    S+L+  D L+GL N      SL          N + ++   D+D 
Sbjct: 357 SGTDLTEKRRSQEHASRLAHFDSLTGLANRHQMSQSLEKILASPKVANRECAVFLLDLDR 416

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE--AAILA 196
           FK +ND  GHP GD ++  ++++L    G    VGRLGG+EF     G   ++  + + A
Sbjct: 417 FKHVNDTLGHPAGDALLKQVAERLESTVGNMGRVGRLGGDEFKVILPGRVPKDKLSYLAA 476

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +R + +   I    G  + I +S GIA    + E    +I  AD ALY AK  GR R 
Sbjct: 477 GIIRSLSQPYSI---EGQRVVIGVSIGIAISPENGESSEDVIRNADLALYAAKDGGRGRF 533

Query: 256 VCFSD 260
             +S+
Sbjct: 534 HFYSN 538


>gi|24373731|ref|NP_717774.1| cyclic nucleotide phosphodiesterase, putative [Shewanella
           oneidensis MR-1]
 gi|24348104|gb|AAN55218.1|AE015659_12 cyclic nucleotide phosphodiesterase, putative [Shewanella
           oneidensis MR-1]
          Length = 320

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 14/176 (7%)

Query: 101 SQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
            +L+  D L+ L N  AF    +S      + L+ + FDID FK +ND +GH  GD  + 
Sbjct: 140 ERLANTDELTKLYNRRAFFNLGLSIAQQSGQALAFIMFDIDRFKHVNDRWGHTTGDAALI 199

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++     +      +GRLGGEEF         ++A  LA  +R   E   + + +G  I
Sbjct: 200 HIAKLTQAILKPVDILGRLGGEEFGILLPDLHHEQACQLAESIRCRFEEQPLAL-NGQII 258

Query: 217 HITISAGIA---------ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             T S GIA         E+  +  + T+   ADQA+  AK++GRN+V   +++ N
Sbjct: 259 KCTASFGIASITIPVIHSEKEAQNLLETLFNSADQAMMQAKRNGRNQVCSATELAN 314


>gi|13472300|ref|NP_103867.1| hypothetical protein mlr2546 [Mesorhizobium loti MAFF303099]
 gi|14023045|dbj|BAB49653.1| mlr2546 [Mesorhizobium loti MAFF303099]
          Length = 518

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 12/162 (7%)

Query: 107 DCLSGLLNHSAFIS----SLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D ++G +    F+     SLG+  ++   +++  D+D+FKQ+ND FGH  GD  +  L  
Sbjct: 97  DAMTGAMTRRYFLEALRDSLGTMRDRREATLLLIDVDHFKQLNDTFGHQFGDLALVHLVK 156

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHIT 219
               VF   M VGRLGG+EF          + A +  D+R++++  +   S  G +I ++
Sbjct: 157 TSERVFADGM-VGRLGGDEFGVII---PHGDLAAINKDIRQLLDTMRAGKSHEGKTIPLS 212

Query: 220 ISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           IS G+A    H    + ++  AD ALY +K +GR RV  F +
Sbjct: 213 ISVGVALAPAHASNTAELMLVADLALYESKAAGRGRVTVFDE 254


>gi|260777767|ref|ZP_05886660.1| GGDEF domain protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605780|gb|EEX32065.1| GGDEF domain protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 480

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 84/177 (47%), Gaps = 25/177 (14%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           +EL  +   +  LS  D L+ L N   F+          E ++++ FDID FK INDNFG
Sbjct: 300 RELAKANQELRVLSETDPLTELSNRRHFVEEFQQRLVVPESIAVMIFDIDDFKVINDNFG 359

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-----RKI 202
           H VGD VI  ++D +  V       GR+GGEEFA    G S  +   +A+ +       +
Sbjct: 360 HEVGDTVIRQVADAVRTVIKKDHLFGRIGGEEFALVVSGHSLGQVTTIAHKVCHSVRSVV 419

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256
           IE+  I++S G              C   P+++    +  AD  +Y AK  G++R V
Sbjct: 420 IEDKAISVSLG--------------CAYYPLTSFNITLSDADHLMYQAKSLGKDRAV 462


>gi|229491943|ref|ZP_04385763.1| sensory box/ggdef family protein [Rhodococcus erythropolis SK121]
 gi|229321156|gb|EEN86957.1| sensory box/ggdef family protein [Rhodococcus erythropolis SK121]
          Length = 734

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 17/186 (9%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
           GS + E+ +  + I ++ R+D L+G+ N  +F + L        +   +L++   D+D F
Sbjct: 299 GSDVTEVKLQSDEIVRMGRVDALTGMPNRHSFWTELERLLCDPYTSEGRLALAMLDLDNF 358

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILAN 197
           K +ND  GH VGD V+  ++D+L    G      RLGG+EFA     +G S Q   +L  
Sbjct: 359 KSVNDTLGHTVGDAVLREVADRLSEAGGMSQLFARLGGDEFAILFTDVGDSSQVRTLLG- 417

Query: 198 DLRKIIENSQINIS-SGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNR 254
              + IE  Q  I+ +G  + I  S G  + +         ++  AD AL+ AK+SGR  
Sbjct: 418 ---RYIETLQEPITVAGTRLEIGCSIGYYLPDELQSSA-DEMMGAADLALFAAKESGRGG 473

Query: 255 VVCFSD 260
           V  + D
Sbjct: 474 VREYRD 479


>gi|254507842|ref|ZP_05119972.1| response regulator [Vibrio parahaemolyticus 16]
 gi|219549215|gb|EED26210.1| response regulator [Vibrio parahaemolyticus 16]
          Length = 405

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 87/156 (55%), Gaps = 7/156 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +++  D L+GL N     + + S  EK SI   DID+FK++ND +GH  GD  +  +++ 
Sbjct: 253 RMANQDALTGLWNRRFLFNQVCSGCEKRSIAMLDIDHFKKVNDTYGHDGGDAALVTVANI 312

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L + F   + V R GGEEF   +   +++  A L   +R+ ++ + I   +   I++TIS
Sbjct: 313 LKIYFPDDV-VARFGGEEFCIQSCSDNKEFIARLEQ-MRQRLQKTPIK-HNQQEINVTIS 369

Query: 222 AGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
            G+   C  E  ++  I  AD  LYVAK+ GRN++V
Sbjct: 370 IGV---CSLEASLNEQIKIADDRLYVAKERGRNQIV 402


>gi|254292004|ref|ZP_04962783.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|150422081|gb|EDN14049.1| GGDEF family protein [Vibrio cholerae AM-19226]
          Length = 443

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 89/175 (50%), Gaps = 34/175 (19%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151
           ++ +++  D L+G +N       L             +S++F DIDYFKQ+ND +GH +G
Sbjct: 269 KVVEMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLG 328

Query: 152 DKVIAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR- 200
           D ++             SD+LV          R GGEEF      ++ ++A  LA  LR 
Sbjct: 329 DDLLREFALVISREIRESDKLV----------RWGGEEFVVFCAQTTLEQAIELAERLRA 378

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           KI ++S I+  +     IT S GIA+    E I+  + RAD+ALY AK+ GRNR+
Sbjct: 379 KIADHSWIHGGA-----ITCSIGIAQ-MGDERITETVSRADEALYRAKRLGRNRI 427


>gi|86359229|ref|YP_471121.1| putative sensory box/GGDEF family protein (nitrogen fixation
           positive activator protein-like) [Rhizobium etli CFN 42]
 gi|86283331|gb|ABC92394.1| putative sensory box/GGDEF family protein (nitrogen fixation
           positive activator protein-like) [Rhizobium etli CFN 42]
          Length = 737

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 22/206 (10%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA-------FI 119
           E L LV +   + L +G+++G  LK      N   + +  D LSGL N          F+
Sbjct: 269 EALGLVGMFFMVLLAIGWLAGRRLK---AEENSAREEALRDRLSGLSNRDGLGLAVDRFV 325

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
           +        + +++ D+D FK++ND++GH  GD++I  ++  L V+      + R+GG+E
Sbjct: 326 AEARQSKRNVLLLYLDLDGFKEVNDSYGHGTGDQLIRAVAAGLKVLIPQGAVLARIGGDE 385

Query: 180 FAAAALGSSEQEAAILAND-----LRKIIENSQINISSGPSIHITIS-AGIAERCHKEPI 233
           FA A L   E  AA+  ++     L + +E  +  +  G SI I +S AG  +R      
Sbjct: 386 FAIAFLSDGENAAALQLSEQILDFLVEPLEIGRRVVVVGASIGIAMSPAGAIDR------ 439

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
             ++ R+D A+Y AK++GR R+  + 
Sbjct: 440 EELVRRSDLAMYKAKEAGRARMTLYD 465


>gi|51891704|ref|YP_074395.1| sensory box GGDEF domain-containing protein [Symbiobacterium
           thermophilum IAM 14863]
 gi|51855393|dbj|BAD39551.1| putative sensory box/GGDEF domain protein [Symbiobacterium
           thermophilum IAM 14863]
          Length = 375

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 85/191 (44%), Gaps = 36/191 (18%)

Query: 92  ELFISYNRISQLSR-------IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           EL   Y R  Q++R        D L G+ N           I       +  +++ FD+D
Sbjct: 198 ELQRQYARTRQIARSMASLAHTDPLLGIPNRRQMELLIEQEIRCAEEGGQPATMIMFDVD 257

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FKQIND +GH  GD  +  ++  +         VGR GG+EF             I+  
Sbjct: 258 RFKQINDMYGHEAGDAALRAVATTVRQALRATDHVGRWGGDEF-------------IILV 304

Query: 198 DLRKIIENSQINISSGPSIH---------ITISAGIAERCHKEPISTIIYRADQALYVAK 248
            + +  +  Q+    G ++H         +TIS G+A     + +S+ + RAD A+Y AK
Sbjct: 305 RVNETAQAYQLAQRVGEAVHQKLSEHFPIVTISLGVAPYRPGDTVSSWVSRADAAMYRAK 364

Query: 249 KSGRNRVVCFS 259
           +SGRNRVV  S
Sbjct: 365 ESGRNRVVVGS 375


>gi|87122113|ref|ZP_01077997.1| GGDEF family protein [Marinomonas sp. MED121]
 gi|86162660|gb|EAQ63941.1| GGDEF family protein [Marinomonas sp. MED121]
          Length = 714

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 75/148 (50%), Gaps = 5/148 (3%)

Query: 113 LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           L H+ F     +Y    +++ FD+DYFK+ ND FGH  GD V+  + + L         +
Sbjct: 562 LTHTRFKEEGQNY----AVLLFDVDYFKRYNDLFGHQEGDNVLINVVNCLKDNLNKSEKI 617

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKE 231
            R GGEEF      SS  +A  LA  +   IEN QI  +      +T+S G AE R    
Sbjct: 618 YRYGGEEFICVLPESSLNKAITLAQKMVLSIENLQIKHAKSHYGVVTVSVGCAEVRADDM 677

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               +I R+D+ALYVAK  GRN++   S
Sbjct: 678 SWEQLISRSDKALYVAKAKGRNQISADS 705


>gi|15598897|ref|NP_252391.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107103216|ref|ZP_01367134.1| hypothetical protein PaerPA_01004285 [Pseudomonas aeruginosa PACS2]
 gi|218890020|ref|YP_002438884.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254236612|ref|ZP_04929935.1| hypothetical protein PACG_02615 [Pseudomonas aeruginosa C3719]
 gi|254242396|ref|ZP_04935718.1| hypothetical protein PA2G_03141 [Pseudomonas aeruginosa 2192]
 gi|9949866|gb|AAG07089.1|AE004789_9 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|126168543|gb|EAZ54054.1| hypothetical protein PACG_02615 [Pseudomonas aeruginosa C3719]
 gi|126195774|gb|EAZ59837.1| hypothetical protein PA2G_03141 [Pseudomonas aeruginosa 2192]
 gi|218770243|emb|CAW26008.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
          Length = 347

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L   D L+GL N   F   L            +LS++  D+DYFK  ND FGH  GD
Sbjct: 167 LQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGD 226

Query: 153 KVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  ++  +      +     R GGEEFA    G+S   A +LA  +R+ +E+ QI + 
Sbjct: 227 EALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHD 286

Query: 211 SSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              P  H+T+S G++        +    +I  ADQALY AK +GRN+V
Sbjct: 287 QPRPGSHLTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGRNQV 334


>gi|331008390|gb|EGH88446.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 533

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 111/255 (43%), Gaps = 29/255 (11%)

Query: 23  SPHT-----FMIYFSIFFSIFIATVI--FIANIFLFYIGLTPFYGLEYILVENLSLVIIS 75
           SPH      + + +   FSIF+  +   F    F  Y    P Y  ++   E    V+ S
Sbjct: 6   SPHMVSKYLYTLLWFYLFSIFLVAIAWEFKLESFAMYAMNLP-YDQDFEDAERWRFVLTS 64

Query: 76  ITISLLLGYISGSILKELFI----SYNRI-------SQLSRIDCLSGLLNHSAF----IS 120
              +LL   +   +LK L      SYN +         L+R D LSGLLN   F    ++
Sbjct: 65  TGFALLSMVVPFILLKRLMQRLQDSYNDLLKSQALSDSLARHDPLSGLLNRRVFQEQLVA 124

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEE 179
            L   + + ++   D+D FK IND  GH VGD  I  +++ L     G    V RLGG+E
Sbjct: 125 RLEQASSQTAVFLIDLDKFKLINDTHGHAVGDAAICAVAESLREATAGWQASVARLGGDE 184

Query: 180 FAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTII 237
           F  A  G   Q E A LA  +   I  S  ++   P + ++ + GIA          T++
Sbjct: 185 FGLAVSGDFTQVELATLAESVLAKIAASSADL---PRLALSATLGIAISPLDGSDADTLL 241

Query: 238 YRADQALYVAKKSGR 252
             AD A+Y  K  GR
Sbjct: 242 QHADSAMYRGKNGGR 256


>gi|312880831|ref|ZP_07740631.1| response regulator receiver modulated diguanylate cyclase
           [Aminomonas paucivorans DSM 12260]
 gi|310784122|gb|EFQ24520.1| response regulator receiver modulated diguanylate cyclase
           [Aminomonas paucivorans DSM 12260]
          Length = 998

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 79/157 (50%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D LSGLLN  A +    +         E +S+   D+D FK IND +GH  GD+V+   +
Sbjct: 842 DPLSGLLNRRALLEQEEAELTRSRRTGEPVSVAMMDLDRFKAINDRYGHLAGDEVLREAA 901

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +          GR GGEEF     G+S  EAA +   LR  I ++ +    G S+  T
Sbjct: 902 RLIQCNLREYDLCGRYGGEEFLLVFPGASAFEAAQVCERLRFRIADAPLEY-QGQSLAFT 960

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S G+AE      +  +   AD+ALY AK++GR+RVV
Sbjct: 961 ASFGVAEYDRIGSLDALNAAADEALYRAKEAGRDRVV 997


>gi|241767276|ref|ZP_04765010.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Acidovorax delafieldii 2AN]
 gi|241362044|gb|EER58185.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Acidovorax delafieldii 2AN]
          Length = 654

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 83/170 (48%), Gaps = 18/170 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           E   +  RI QL+  D L+GL N   F       ++ L    +  +++F D+D FKQ+ND
Sbjct: 295 ERDTARRRIHQLAFFDTLTGLPNRVQFRSNAEGALAHLQRSGDAGALLFVDLDRFKQVND 354

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD ++  ++ +LV        VGRL G+EF A   GS++ EA   A  L   I 
Sbjct: 355 TQGHAAGDALLEAVARRLVQACRRQDLVGRLAGDEFVAFLPGSTQDEALTAAQHLLDTIA 414

Query: 205 -----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
                + QI + +  SI I +  G         I T++  ADQA+Y AKK
Sbjct: 415 APLDIHGQIQVPTA-SIGIAMYPGDGSD-----IDTLLSHADQAMYQAKK 458


>gi|193222442|emb|CAL63411.2| Conserved hypothetical protein; putative GGDEF family protein
           [Herminiimonas arsenicoxydans]
          Length = 359

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 91/190 (47%), Gaps = 29/190 (15%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF------------ISSLGSYNEKLS---------I 131
           ++ +Y  +   S  D L+GLLN   F              S    NE+           +
Sbjct: 150 VYRNYQSLLDYSERDSLTGLLNRKTFDEKFARMVNAKPADSAPHGNEERRHHTDVKSQWL 209

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              DID+FK++ND FGH  GD+V+  +++ L   F     V R GGEEF      ++  +
Sbjct: 210 AVIDIDHFKRVNDVFGHLYGDEVLILVANVLRASFRAQDRVFRFGGEEFVILLRSTTLAD 269

Query: 192 AAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           A ++    R+ IE+        P +  IT+S G A   H+ P+ TI+  ADQALY AK  
Sbjct: 270 AQMVFERFRENIEHYAF-----PQVGKITVSIGFASIGHETPV-TILGHADQALYYAKDH 323

Query: 251 GRNRVVCFSD 260
           GRN+ VC+ D
Sbjct: 324 GRNQ-VCYYD 332


>gi|193222304|emb|CAL61559.2| conserved hypothetical protein; putative membrane protein; putative
           PAS/PAC, EAL, GGDEF domains [Herminiimonas
           arsenicoxydans]
          Length = 869

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 18/180 (10%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDID 137
           I+   + EL I Y  +      D L+ L N    +++L +  E        L+++F D+D
Sbjct: 424 ITKRKMTELQIEYQAMH-----DMLTDLPNRRYLVNTLATAMETSRQQQSSLTMLFCDLD 478

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK +ND  GH  GD+ +  +S ++V V     FV R GG EF      SS  E++I A 
Sbjct: 479 FFKSVNDTHGHDFGDQCLLEISKRIVAVLPESDFVARFGGNEFVILT-NSSLAESSIKAK 537

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRV 255
            + + +  S+  +    ++ I +S GIA+    H+ P + +I  AD A+Y AK+ GRNR 
Sbjct: 538 AIARAV--SERLVFENVAVKIQVSIGIAQLSPDHQVP-ADLIREADAAMYQAKERGRNRT 594


>gi|114799344|ref|YP_759497.1| putative diguanylate cyclase [Hyphomonas neptunium ATCC 15444]
 gi|114739518|gb|ABI77643.1| putative diguanylate cyclase [Hyphomonas neptunium ATCC 15444]
          Length = 327

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 85/183 (46%), Gaps = 13/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           S S++  L    + +   S  D L+ + N  AF  +L          +E L +   D+D+
Sbjct: 143 SQSLISTLSEQLDEVRTQSLRDPLTAIPNRRAFDKTLEEAMDHAARTHEPLCVAMADLDH 202

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA----AI 194
           FK +ND FGHP GD V+   +  +      P  V R GGEEFA    GS    A      
Sbjct: 203 FKALNDTFGHPAGDVVLQNFARLISGSANEPRLVARYGGEEFAIIFPGSDLMAAYNRLVN 262

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + + L K +  ++ ++  GP   +T S G+A+         +I +AD +LY AK  GRNR
Sbjct: 263 IKHTLSKTVHEAEGSV--GPLPAVTASFGVAKYQPGMTARELIQKADASLYDAKAKGRNR 320

Query: 255 VVC 257
           V  
Sbjct: 321 VCA 323


>gi|92112820|ref|YP_572748.1| diguanylate cyclase [Chromohalobacter salexigens DSM 3043]
 gi|91795910|gb|ABE58049.1| diguanylate cyclase [Chromohalobacter salexigens DSM 3043]
          Length = 363

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 112/233 (48%), Gaps = 15/233 (6%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
           + +  S+ I +V  +A + L  +  TP+      L + L ++ + + + L+LG I    +
Sbjct: 128 YKVAMSVSIGSVA-VATLTLAPLA-TPWMAGGAALHQELQIINL-VAVFLVLGLI----M 180

Query: 91  KELFISYNRISQLSRIDC----LSGLLNHSAFISS---LGSYNEKLSIVFFDIDYFKQIN 143
             L +   R     R D     L+ +LN  A       L       +++  D D+FKQIN
Sbjct: 181 WRLHVITERCEHHFRRDATHDYLTTVLNRRAIFHEADMLWHQQRHFTLLLLDADHFKQIN 240

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD+V+  L++ L         +GR+GGEEF      S  +E   +A  +R+ +
Sbjct: 241 DEYGHTAGDEVLRHLANTLRGALREHDRLGRVGGEEFLIVLPESEREEVLAVAAHIRQCL 300

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +    + +  ++ +T S G+A       +S +I  AD+ LY AK +GR+++V
Sbjct: 301 SDRPCQLDT-LTLPVTFSMGLAASDEAALLSEVIDLADRRLYRAKSAGRDQLV 352


>gi|70729435|ref|YP_259173.1| sensory box protein [Pseudomonas fluorescens Pf-5]
 gi|68343734|gb|AAY91340.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas
           fluorescens Pf-5]
          Length = 1114

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 63/203 (31%), Positives = 101/203 (49%), Gaps = 19/203 (9%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
           + ++ T  LL+     S+LK    +  +I  L+  D L+ L N +         I+ L  
Sbjct: 654 ITLNETPCLLMTARDVSLLKN---AQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKR 710

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           +N + +++F D+D+FK IND+ GHPVGD V+  ++ +L         V RLGG+EF    
Sbjct: 711 HNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRMEDTVARLGGDEFVVLL 770

Query: 185 LG------SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTII 237
            G         ++   LA+ LR+++  S+     G  + +T S G+A    H    + ++
Sbjct: 771 SGLEGTRNEVSEQVRQLADTLRELL--SEPMFLDGQRLQVTPSIGVALIPDHGSTPTDLL 828

Query: 238 YRADQALYVAKKSGRNRVVCFSD 260
            RAD ALY AK SGRN    F +
Sbjct: 829 KRADIALYRAKDSGRNTTQMFHN 851


>gi|311696654|gb|ADP99527.1| response regulator receiver domain protein (CheY) [marine bacterium
           HP15]
          Length = 598

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 90/188 (47%), Gaps = 17/188 (9%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           EL  +  ++  +S  D L+ + N   F   L         +   LS++  DID+FK++ND
Sbjct: 410 ELERANEQLRAISLTDGLTHVANRRRFDEKLQDEWKRAQRHGHPLSLLLLDIDHFKRVND 469

Query: 145 NFGHPVGDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
             GH VGD     +A L    V   G    + R GGEEF      + E+ A  +A  +R+
Sbjct: 470 ELGHLVGDDCLTEVAALCAAEVQRSGD--LLARYGGEEFIILLPATPEEGAVRVAERVRQ 527

Query: 202 IIENSQINISSG-PSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +  S +  S     + +TIS G+A        EP   +I +AD+ALY AK+SGRNRV+ 
Sbjct: 528 AVARSPVYSSERVAPVSLTISVGVACVVPDPDMEP-QELIRQADEALYSAKESGRNRVMV 586

Query: 258 FSDIENNT 265
             D    T
Sbjct: 587 ARDFRAAT 594


>gi|315269441|gb|ADT96294.1| diguanylate cyclase with GAF sensor [Shewanella baltica OS678]
          Length = 594

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 10/177 (5%)

Query: 89  ILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQIND 144
           +L++  +S N ++ +++  D L+GL N   F   L +  +      +   D+DYFK  ND
Sbjct: 413 VLQQALVSANTQLKEMAETDELTGLANRRPFTERLETVLQADIPAGLFMLDVDYFKSYND 472

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
            +GH  GD V+  ++D L      P    + R+GGEEFA      +  +   +A  L  +
Sbjct: 473 TYGHLEGDVVLKRVADALAQCDILPHNALLARIGGEEFALVVEHVTPAQLTAIATQLCYL 532

Query: 203 IENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E   I   + P   +TIS G      ++     ++ ++ RAD  LY AK  GRNRV
Sbjct: 533 VEQLNIPHQASPLAVVTISIGSVFLPLDKVSGLKMADVLRRADVCLYRAKDKGRNRV 589


>gi|292493800|ref|YP_003529239.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291582395|gb|ADE16852.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 640

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 89/174 (51%), Gaps = 9/174 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFFDIDYFKQI 142
           L EL ++  R+ Q++  D L+ L N    +  +      Y      LS +  D+D FKQI
Sbjct: 458 LAELAVANRRLEQMAMTDSLTALPNRRYAMERMEQAWAEYQRNGTPLSCLVVDLDLFKQI 517

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND++GH +GD V+  +++       +   V RLGGEEF      ++  EA  +A  LR  
Sbjct: 518 NDHYGHDIGDGVLREIANVFRSSARSSDVVCRLGGEEFFVICTNTTAAEALQVAERLRHA 577

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV 255
           +++    +  G   +++IS G+A           +YR ADQALY AK+ GR+++
Sbjct: 578 VKSHHWTV-PGFGGNLSISVGLAASLEGMKEWDDLYRLADQALYDAKRKGRDQI 630


>gi|90022538|ref|YP_528365.1| cellulose binding, type IV [Saccharophagus degradans 2-40]
 gi|89952138|gb|ABD82153.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 443

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 12/183 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           +I K L +   +  +L++ D L+G+ N           +++  +     S++  DID+FK
Sbjct: 262 NINKLLNLQTQKFEELAKTDMLTGVANRLGVREYLFEGLNNWRNNQSPFSLILIDIDHFK 321

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
             ND  GH VGDKV+   ++           V R GGEEF      +   +A  +A +LR
Sbjct: 322 LFNDTHGHDVGDKVLKGAAEIFRNSVRNTDLVARWGGEEFIVICPNTDTHQATTVAENLR 381

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + +++I       + +T S G+A   +   +  +  +AD+ALY AK++GRN+VV  S 
Sbjct: 382 TRLASAEI----FNGLKVTASFGVAS-MNTPSLEHLFKQADEALYSAKEAGRNKVVVSST 436

Query: 261 IEN 263
           + N
Sbjct: 437 LAN 439


>gi|15837588|ref|NP_298276.1| hypothetical protein XF0986 [Xylella fastidiosa 9a5c]
 gi|9105918|gb|AAF83796.1|AE003936_10 hypothetical protein XF_0986 [Xylella fastidiosa 9a5c]
          Length = 594

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 20/163 (12%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+G L   A        I         LS+ F DID+FK+IND +GH  GD  +  +
Sbjct: 435 VDGLTGALTRVAIERRLERDIDDARQMGTPLSVAFIDIDHFKRINDEYGHAAGDACLRQV 494

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP---- 214
             ++         +GR GG+E  A   G+    A       R++ E  +I +SS P    
Sbjct: 495 VQRVRGWLRASDALGRHGGDELIAILPGADLAAA-------RRVAEGIRIAVSSQPFQFE 547

Query: 215 --SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              +  T+S G+A     E I  ++ RAD  LY +K +GR+RV
Sbjct: 548 CTRLRCTLSLGVASWLPDESIEALLQRADNGLYASKAAGRDRV 590


>gi|146280177|ref|YP_001170334.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC
            17025]
 gi|145558418|gb|ABP73029.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Rhodobacter sphaeroides ATCC 17025]
          Length = 1477

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 11/170 (6%)

Query: 98   NRISQLSRIDCLSGLLNH------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            +R+ QL+  D L+GL N            +  +    L+++  DID FK +ND   H  G
Sbjct: 1007 DRLRQLADEDPLTGLANRRALSAALEARLAAAAGPAPLALIMLDIDNFKSVNDTMRHEAG 1066

Query: 152  DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            D+V+  ++++L    G    + RLGG+EF   A G   + A +LA  LR  I    I I 
Sbjct: 1067 DRVLCIVAERLRACAGREDLLARLGGDEFMLLASGLDREAAVVLAERLRDAIARP-IRID 1125

Query: 212  SGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFS 259
            + P I +T SAG+A  C  +   +  ++  AD AL+ AK++GRNR +  S
Sbjct: 1126 TQP-IRLTASAGVA-LCPDQGTVMPLLMTGADIALHAAKRAGRNRTILLS 1173



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 77/160 (48%), Gaps = 7/160 (4%)

Query: 102 QLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +L+R D L+GL N  A      +    +  + +   DID+FKQIND FGH  GD+V+   
Sbjct: 379 RLARSDPLTGLGNRRALDLVFEAAQPEHSSIGLALLDIDHFKQINDRFGHSAGDRVLRRF 438

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQINISSGPSIH 217
           ++ +  V        R+GGEEF     G      A L   +  ++ +   + +       
Sbjct: 439 AEAVTEVLPEGTHAFRVGGEEFLILCPGFDMAAMAGLVGQVAHQVQQKPPLRVQDHSP-- 496

Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           +T SAGIA R      +  +  RAD  LY AK+SGRNR +
Sbjct: 497 LTFSAGIAVRPEDGSSLDQLYARADACLYEAKRSGRNRFI 536


>gi|264678043|ref|YP_003277950.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262208556|gb|ACY32654.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 621

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 10/165 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + QLS  D L+GL+N  AF       ++    +   L+++ FD+D+FK+IND  GH  GD
Sbjct: 454 LRQLSHRDHLTGLMNRRAFDDQAPAQLAQAERHRWPLALMLFDLDHFKRINDQHGHETGD 513

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +++   +            + R GGEEF A      ++ A  LA  LR+ ++   ++   
Sbjct: 514 QLLQHAAQLAQAQLRRGDLLARYGGEEFIALLPDCDDKAALALAERLRQALQQP-LHRPD 572

Query: 213 GPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255
           G  ++++ S G+A +    +  +  +  RAD ALY AK  GRN+V
Sbjct: 573 GSMLNLSASFGLAVQPAGLQSSLPELFTRADTALYAAKAKGRNQV 617


>gi|241206386|ref|YP_002977482.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860276|gb|ACS57943.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 736

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 114/227 (50%), Gaps = 26/227 (11%)

Query: 50  LFYIGLTP----FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR 105
           L +I  +P    +  +  ++++ L LV +   + L++G+++G  LK      N   + + 
Sbjct: 248 LVWISRSPGDIGYAQVRPMVIQALGLVGLFFVVLLVIGWLAGRRLK---AEENSAREEAL 304

Query: 106 IDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D LSGL N          F+         + +++ D+D FK++ND++GH  GD++I  +
Sbjct: 305 RDRLSGLSNRDGLGLAVDRFVVEARQTKRNVLLLYLDLDGFKEVNDSYGHGTGDQLIRAV 364

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LAND----LRKIIENSQINISSG 213
           +  L V+      + R+GG+EFA A L  SE  AA+ LA      L + +E  +  +  G
Sbjct: 365 AAGLAVLIPQGAVLARIGGDEFAIAFLSDSENAAALQLAEQILDFLVEPLEIGRRVVVVG 424

Query: 214 PSIHITIS-AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            SI I +S +G   R        ++ R+D A+Y AK++GR R+  + 
Sbjct: 425 ASIGIAMSPSGTIGR------EELVRRSDLAMYKAKEAGRARMTLYD 465


>gi|158336184|ref|YP_001517358.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158306425|gb|ABW28042.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
          Length = 196

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 8/158 (5%)

Query: 103 LSRIDCLSGLLNH---SAFISS-LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           LS  D L+ L N      F+S+ +     K  ++ FDID+FK+IND +GH  GD V+  +
Sbjct: 37  LSERDSLTQLYNRRVAEEFLSTCVADAASKSGVILFDIDHFKRINDTYGHQAGDIVLVAV 96

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           + +   V      + R GGEEF         +    +A +LR  I + +I     P+  +
Sbjct: 97  AMRCSQVLRKTDCLARWGGEEFFVVLQHVGAEAIERIAEELRLAIASEEIE----PAGSV 152

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T S G++     + I +++ R D+A+Y AK SGRNRV+
Sbjct: 153 TASFGVSLIKSNDTIGSLLQRVDKAMYAAKTSGRNRVM 190


>gi|149376979|ref|ZP_01894733.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter algicola DG893]
 gi|149358756|gb|EDM47226.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter algicola DG893]
          Length = 558

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 20/164 (12%)

Query: 106 IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+ L N  A+   L         Y   LS+   DID+FK++ND++GH  GD+V+  +
Sbjct: 396 TDVLTQLPNREAWQERLSFEYQRWQRYRHSLSVCVLDIDFFKRVNDSYGHKAGDRVLQLV 455

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS------ 212
           +  L        F+ R GGEEF      ++        ++ R ++++ + +I+       
Sbjct: 456 ARALRERLRATDFIARFGGEEFVILLPETN-------VDNARSVLDSMRGHIAELPFHFR 508

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  + +T SAG+AE    +    +  RAD+ALY+AK SGR++V+
Sbjct: 509 GEPVSVTFSAGLAEFDGDDDEDDVFDRADKALYLAKDSGRDQVL 552


>gi|84393501|ref|ZP_00992256.1| sensory box/GGDEF family protein [Vibrio splendidus 12B01]
 gi|84375854|gb|EAP92746.1| sensory box/GGDEF family protein [Vibrio splendidus 12B01]
          Length = 634

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 83/174 (47%), Gaps = 20/174 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSY--NEKLSIVFFDIDYFKQINDNFGHP 149
           ++  LS  D L+G  N   F        S +  Y   E+  +   DIDYFK+IND FGH 
Sbjct: 466 KLRNLSEKDALAGCWNRRKFDLELRDECSRVNRYPTREQSCLAILDIDYFKRINDRFGHD 525

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+VI  ++  L        FV R+GGEEF      ++ + A  + N LR  +     N
Sbjct: 526 YGDRVIQTVAQVLQRECRETDFVARIGGEEFGVILPHTTTEGAEYVLNRLRIAVSLELDN 585

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDIE 262
           +       +T+S GI    +   ++   Y+ AD ALY AK +GRN V  F D E
Sbjct: 586 V-------VTVSGGITNITNDPALN---YKCADLALYEAKAAGRNNVCLFLDKE 629


>gi|109898626|ref|YP_661881.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109700907|gb|ABG40827.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
          Length = 718

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 36/256 (14%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           ++++A+++  A +F    G      L   L E +++  + ++   +          EL  
Sbjct: 444 NVWLASIVVSAILFALVYGRISQRRLNKRLSEEVAIRTLELSQKNV----------ELQA 493

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVF--------------------FD 135
           +Y  +  +S  D L+G+ N     + + +  EK   ++                     D
Sbjct: 494 AYREMEAISLTDKLTGINNRRFLENHIETDLEKSQRIYDDWRDGKTPTPHQGDIVVFMID 553

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D+FK++ND  GH VGD+V+  L+ +L  VF    ++ R GGEEF   A      +A +L
Sbjct: 554 MDHFKRVNDEHGHHVGDEVLRQLTKRLARVFRQSDYLVRWGGEEFVGIARFIDRSDAPLL 613

Query: 196 ANDLRKIIENSQINISSGPSIHITISAG------IAERCHKEPISTIIYRADQALYVAKK 249
           A  L   +  S   +S     H T S G      I E   +    T+I  AD  LY AKK
Sbjct: 614 AQRLLDEVSASPFRLSDKALSHYTCSIGYVCYPPILEHSQQTDWKTLIALADGCLYQAKK 673

Query: 250 SGRNRVVCFSDIENNT 265
           SGRN  V    +   T
Sbjct: 674 SGRNAWVGIEKVHQPT 689


>gi|47093829|ref|ZP_00231574.1| GGDEF domain protein [Listeria monocytogenes str. 4b H7858]
 gi|226224516|ref|YP_002758623.1| GGDEF domain protein [Listeria monocytogenes Clip81459]
 gi|254825593|ref|ZP_05230594.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J1-194]
 gi|254852815|ref|ZP_05242163.1| GGDEF domain-containing protein [Listeria monocytogenes FSL R2-503]
 gi|254931917|ref|ZP_05265276.1| GGDEF domain-containing protein [Listeria monocytogenes HPB2262]
 gi|254993375|ref|ZP_05275565.1| GGDEF domain protein [Listeria monocytogenes FSL J2-064]
 gi|300763778|ref|ZP_07073775.1| hypothetical protein LMHG_10682 [Listeria monocytogenes FSL N1-017]
 gi|47017796|gb|EAL08584.1| GGDEF domain protein [Listeria monocytogenes str. 4b H7858]
 gi|225876978|emb|CAS05687.1| GGDEF domain protein [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|258606143|gb|EEW18751.1| GGDEF domain-containing protein [Listeria monocytogenes FSL R2-503]
 gi|293583469|gb|EFF95501.1| GGDEF domain-containing protein [Listeria monocytogenes HPB2262]
 gi|293594836|gb|EFG02597.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J1-194]
 gi|300515514|gb|EFK42564.1| hypothetical protein LMHG_10682 [Listeria monocytogenes FSL N1-017]
 gi|332312352|gb|EGJ25447.1| GGDEF domain protein [Listeria monocytogenes str. Scott A]
          Length = 375

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 15/190 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +LL+ Y    I K   +  N +++ +  D L+ L N   F    G          + LS+
Sbjct: 184 ALLVFYACNYIDKSNLVIQN-LTETAMTDSLTNLPNMRFFTQQFGWIFAKSQKRKKSLSL 242

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ 190
              DID+FK+IND  GH  G+ V+A  S  L    F       R+GGEEFA        +
Sbjct: 243 FIIDIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTE 302

Query: 191 EAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVA 247
           +AA++A+  R+ +E ++   N +SG    +T+S G+A        +  ++  ADQALY A
Sbjct: 303 QAALIADFFREEVERAKFPYNPASG---KVTVSIGVASASSNFSTTESLFEAADQALYQA 359

Query: 248 KKSGRNRVVC 257
           K++GRN++  
Sbjct: 360 KQNGRNQIAV 369


>gi|330898844|gb|EGH30263.1| GGDEF domain-containing protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 424

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 100/228 (43%), Gaps = 32/228 (14%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F+ L    +   +L I+   + L+   I+ ++  E +       Q++  D L+GL    A
Sbjct: 198 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 247

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
               +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        R GG
Sbjct: 248 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAYRYGG 307

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINI-------------------SSGPSIHI 218
           EEFA      S  E       +R+ I + +I +                   +   S+ +
Sbjct: 308 EEFAIVFAAKSIDECMPHLEAIRETIASYEIQLRNKTDRPQDDQQGRQRRSGAQAGSVSV 367

Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           T+S G+AER   H+ P   ++  ADQALY AK +GRN VV +  +   
Sbjct: 368 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 414


>gi|296134149|ref|YP_003641396.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermincola sp. JR]
 gi|296032727|gb|ADG83495.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermincola potens JR]
          Length = 692

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 103/209 (49%), Gaps = 23/209 (11%)

Query: 62  EYILVENLSLVIISITISLLLG----YISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           EY++   + ++ +++T ++  G    +  G  + E   +  ++ +++  D L+GL N + 
Sbjct: 204 EYLIKNRIKIMELTVTPAIWQGKAVVFGVGKDITERKQAEEKMRRMAYYDSLTGLPNRAF 263

Query: 118 FISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           F   L        S  +KL+I+F D+D FK +ND  GH VGD+++  ++ +L    G   
Sbjct: 264 FKEKLTAAIIKSRSKKQKLAILFLDLDRFKTVNDIMGHDVGDQLLKDVAKRLKKRVGKGR 323

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-----SGPSIHITISAGIA 225
            V RL G+EF       S  E      D+RK  E+   N+      +G + H+T S GI 
Sbjct: 324 VVARLSGDEFIILLPNVSRIE------DVRKFAEDVCENLRKPFTIAGRNFHVTTSIGIT 377

Query: 226 E-RCHKEPISTIIYRADQALYVAKKSGRN 253
               + E   T++  AD A+Y AK+ G N
Sbjct: 378 VFPDNGEDAKTLLKNADIAMYKAKEQGGN 406


>gi|256004528|ref|ZP_05429507.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum DSM
           2360]
 gi|255991533|gb|EEU01636.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum DSM
           2360]
          Length = 401

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 13/167 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y R+ +++ ID L+G+ N   F   L          N  LS+   DID+FK+ ND FGH 
Sbjct: 232 YQRMHEMATIDSLTGIYNRLYFQERLREEFANAKKENYDLSLAIMDIDHFKRFNDTFGHL 291

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GDKV+  ++  +     +   + R GGEEF      +S +EA      LR I+  + I 
Sbjct: 292 FGDKVLKHIAHLMKKSLRSGDIIARYGGEEFVILLPRTSVKEAYDKVERLRNIVAKTTIK 351

Query: 210 ISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRN 253
                   +T+S G++   E  + E  S ++  AD ALY AK+SGRN
Sbjct: 352 -DELVEASVTVSFGVSSYPEFANTE--SELLKTADNALYDAKESGRN 395


>gi|172064505|ref|YP_001812156.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
 gi|171997022|gb|ACB67940.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
          Length = 520

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 97/208 (46%), Gaps = 17/208 (8%)

Query: 68  NLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           + ++ I S    L LG++  S+L     ++   +   +  L+R D L+GL N      +L
Sbjct: 303 DRAIPIGSAMAVLALGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRMLDVTL 362

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGR 174
                +       LS++F D+D+FK+ ND  GH  GD  +A ++  +      P  +  R
Sbjct: 363 AREWRRAARSQHALSLLFVDVDHFKRYNDTQGHQAGDDALAAVARCIAGCLHRPADYAAR 422

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--- 231
            GGEEF           A  +A  +R  I +  I   +G S  +T S G+   C+ E   
Sbjct: 423 YGGEEFVVVLPNVDTNGAVTIAESIRTGILDLGIRHDTGVSGRLTASIGVTT-CYPERDD 481

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
            I   +  AD ALY AK+SGRN+VV  +
Sbjct: 482 SIQAALKLADDALYRAKESGRNQVVVLT 509


>gi|23099659|ref|NP_693125.1| hypothetical protein OB2204 [Oceanobacillus iheyensis HTE831]
 gi|22777889|dbj|BAC14160.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 591

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 90/161 (55%), Gaps = 11/161 (6%)

Query: 102 QLSR---IDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           QL++   +D L+GL +      ++ ++ +   K +++ FDID FK++ND++GH +GD+V+
Sbjct: 434 QLTKALAVDHLTGLYSRKYLEETVTNHMQEGNKGALMLFDIDDFKRVNDSYGHLIGDQVL 493

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +++ L  V        R GGEE A  A   S +EA  ++ +  +I+E+     ++ P 
Sbjct: 494 IQVAEALQEVVADNYIAARWGGEELAIYAKQISLEEAIRISKEACEIVEH-----TTNPR 548

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + I+           +  +TI  R+D+ALY AK+ G+N+VV
Sbjct: 549 VTISSGVSSWSSDENDTANTIWERSDKALYEAKELGKNKVV 589


>gi|152966894|ref|YP_001362678.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216]
 gi|151361411|gb|ABS04414.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216]
          Length = 485

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 24/173 (13%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQI 142
           +L+ +     R+  LS  D L+GL N  +    L      G+    ++I   D+D+FK+ 
Sbjct: 310 LLEAVGAQAERLRWLSVTDELTGLPNRRSGREQLADRCAPGAAGRPVTIALLDLDHFKRF 369

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF---AAAALGSSEQEAAILANDL 199
           ND  GHP GD ++   +D           + R GGEEF    AA +    +E   L +  
Sbjct: 370 NDTRGHPAGDTLLRECADAWRARLPPGGHLARWGGEEFLLLCAAPV----EEVDHLLSGW 425

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           R+     Q           T SAG A    +EP+  ++ RAD ALY AK +GR
Sbjct: 426 RRATPQGQ-----------TFSAGTAGWDGREPVEALVARADAALYEAKSAGR 467


>gi|300310067|ref|YP_003774159.1| diguanylate cyclase GGDEF family protein [Herbaspirillum
           seropedicae SmR1]
 gi|300072852|gb|ADJ62251.1| diguanylate cyclase GGDEF family protein [Herbaspirillum
           seropedicae SmR1]
          Length = 369

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 89/184 (48%), Gaps = 15/184 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           ++L  +  ++  LS  D L+G+ N  +F  +L         +   L + F D+D+FK  N
Sbjct: 184 RDLAQANEQLRSLSLTDGLTGIANRRSFDETLEQEWRRSMRHGTPLMLAFIDVDWFKPYN 243

Query: 144 DNFGHPVGDKVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           D++GH  GD V+  ++    Q +   G    V R GGEEFA  A  +  Q  A +   + 
Sbjct: 244 DHYGHLAGDAVLRQVAQTLRQSIARVGDT--VARYGGEEFAIIAADTDGQAGADMLRRMC 301

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVC 257
             +    I  +      ITISAG+A     +P   +  ++  AD ALY AK  GRNRVV 
Sbjct: 302 DAVHALAIAHAGSAMGRITISAGVASCNPGQPGAGLDGLLQAADAALYRAKMEGRNRVVL 361

Query: 258 FSDI 261
            +++
Sbjct: 362 ATEL 365


>gi|223982490|ref|ZP_03632729.1| hypothetical protein HOLDEFILI_00003 [Holdemania filiformis DSM
           12042]
 gi|223965515|gb|EEF69788.1| hypothetical protein HOLDEFILI_00003 [Holdemania filiformis DSM
           12042]
          Length = 342

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 14/168 (8%)

Query: 96  SYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           SY ++   +R D L+ LLN       I++     +   ++  DID+FKQIND FGHP+GD
Sbjct: 165 SYRQMEYNARHDSLTQLLNRRWVETQITAAMQEGDPGVMIMLDIDWFKQINDTFGHPLGD 224

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEF-----AAAALGSSEQEAAI--LANDLRKIIEN 205
           +V+  L   +  VF   +  GR+GG+EF        A  S+ Q  AI   A  L+++ E 
Sbjct: 225 QVLETLGQAIQTVFPQAL-SGRIGGDEFILYLKEEQAGSSALQTTAIEKEAERLQRVWE- 282

Query: 206 SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252
            ++    G +  ++ S G A    + E    +   ADQALY AK +GR
Sbjct: 283 -ELRRQKGLTFPVSASLGAARFPQQGERFDQLWLHADQALYQAKAAGR 329


>gi|157736866|ref|YP_001489549.1| GGDEF domain-containing protein [Arcobacter butzleri RM4018]
 gi|157698720|gb|ABV66880.1| GGDEF domain protein [Arcobacter butzleri RM4018]
          Length = 415

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 12/211 (5%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           Y +E  + EN  ++  +I     L      + KEL +    + +  + D L+ LLN  A+
Sbjct: 209 YKIENSIKENNKILSNNIEKFKFLNRQIEELQKELIL----VKEEQQFDFLTSLLNRRAY 264

Query: 119 ISSLGSYNEKLSI-------VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              +    ++ +I       VF DID+FK IND +GH  GD ++   +  L  +      
Sbjct: 265 QEEVKKVEKQFTIFGSDFAIVFIDIDHFKNINDVYGHACGDAILKNFATILKDLTRKEDI 324

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
           + R GGEEF A     SE E       ++  ++N  + I     + I  SAG+A R    
Sbjct: 325 ISRYGGEEFVALVNYQSETEIQRYIKRVKTALQN-HVFIYKTQQLQIEFSAGVAFRNKYH 383

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             +     AD+ LY AK  GRN+V+   +IE
Sbjct: 384 SFAEAEASADKLLYKAKNKGRNKVIFDDEIE 414


>gi|260775546|ref|ZP_05884443.1| sensory box/GGDEF family protein [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608727|gb|EEX34892.1| sensory box/GGDEF family protein [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 613

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 87/175 (49%), Gaps = 25/175 (14%)

Query: 98  NRISQLSRIDCLSGLLN---------HSAFISSLGSYNEKLS--IVFFDIDYFKQINDNF 146
            R+  LS  D L+ L N         HSA +S  G Y E+    +   DID+FK++ND  
Sbjct: 446 ERLRILSEKDELTQLWNRRKFELELRHSAKLS--GRYPERHDTCLALLDIDFFKRVNDEL 503

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+VI+ +   ++       F+ R+GGEEFA     +S +EA    N +R      
Sbjct: 504 GHDEGDRVISRVGAIIIEALRETDFIARIGGEEFAIIMPHTSIEEAEQALNRVR------ 557

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VCFS 259
            I +     + IT+S G+ +       ST  Y+ AD ALY +K  GRNRV VC S
Sbjct: 558 -IAVEMAADVPITVSVGLTDLTSN---STRCYKCADIALYESKTLGRNRVSVCRS 608


>gi|123443999|ref|YP_001007969.1| cell signalling regulator [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090960|emb|CAL13842.1| Possible regulator involved in cell signalling [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 519

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 9/156 (5%)

Query: 104 SRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           ++ D ++GL N     ++L       +  S++  DID+FK+IND++GH VGD+VI  L+ 
Sbjct: 366 AQTDPMTGLYNRRGLATTLEPIAQLGQHFSVIALDIDHFKEINDSYGHDVGDEVIKQLAI 425

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHIT 219
           Q+         + R GGEEF      +    A  +A  LR  +E   + NI       IT
Sbjct: 426 QIRESSRDSDILCRSGGEEFLMLLPSTVPDVATPVAKRLRHNVEMMVMANIRP-----IT 480

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           IS G+A    +      + RAD+ALY AK+ GRNRV
Sbjct: 481 ISLGVAFWNGEGTPEDALKRADEALYRAKQQGRNRV 516


>gi|91226501|ref|ZP_01261250.1| GGDEF family protein [Vibrio alginolyticus 12G01]
 gi|91189133|gb|EAS75414.1| GGDEF family protein [Vibrio alginolyticus 12G01]
          Length = 445

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 89/166 (53%), Gaps = 20/166 (12%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDK 153
           ++L+  D L+G +N  A    L   + ++       SI++ D+D FK++ND FGH +GD 
Sbjct: 275 AELAHRDALTGAMNRYAVQHWLEQQSRQVRWGHNTFSILYLDLDKFKKVNDKFGHQMGDD 334

Query: 154 VIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           ++     + V+V  T ++      R GGEEF      ++ ++A   A  +RK +E+    
Sbjct: 335 ILR----EFVMVVATSIYSDDRLVRWGGEEFVVFCPDTNIEQALEKAEMIRKNVEDHL-- 388

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              G S  +T S GIA+    E +S  + RAD+ LY AK++GRNRV
Sbjct: 389 WVHGES--LTCSIGIAQ-MQNERVSETMARADEVLYQAKRNGRNRV 431


>gi|27365180|ref|NP_760708.1| Pole remodelling regulatory diguanylate cyclase [Vibrio vulnificus
           CMCP6]
 gi|37680766|ref|NP_935375.1| response regulator [Vibrio vulnificus YJ016]
 gi|27361327|gb|AAO10235.1| Pole remodelling regulatory diguanylate cyclase [Vibrio vulnificus
           CMCP6]
 gi|37199515|dbj|BAC95346.1| response regulator [Vibrio vulnificus YJ016]
          Length = 416

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 5/159 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           N + +++  D L+GL N     S   +  E   I   DID+FK++ND +GH  GD  +  
Sbjct: 261 NELYRMANQDALTGLWNRRYLFSQSCNSCELRHIAMLDIDHFKKVNDTYGHDGGDIALKT 320

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +++ L + F   + V R GGEEF   +  S +     L + +R+ +E + I      +IH
Sbjct: 321 VANILKIYFPGEI-VARFGGEEFCIQSCQSYDDFVTRLEH-MRQRVEKTTI-THKAHNIH 377

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ITIS G+A    ++ +   I  AD  LY AK +GRN+VV
Sbjct: 378 ITISIGVASL--QDELENQIKEADGYLYQAKANGRNQVV 414


>gi|294624551|ref|ZP_06703228.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292601157|gb|EFF45217.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 507

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 87/180 (48%), Gaps = 18/180 (10%)

Query: 96  SYNRISQLSRI---DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145
           S NR+  L+     D L+G+ N     ++L    E        LSI F D+D FK++ND 
Sbjct: 317 SENRMRHLAEQASRDALTGVFNRHQLGTALTHEFELASRQGWPLSIAFIDLDDFKRVNDA 376

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKII 203
            GH VGD+V+   +  L  +  T   V R GGEEF    L ++  +AA++  +  L +  
Sbjct: 377 HGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEF-LVILPNTPADAALMVIERILAETA 435

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRVVCFS 259
                 +  GP +HIT SAG+A     E     I  ++  AD  LY +K  GRNRV  + 
Sbjct: 436 RTPMAQLQGGP-LHITFSAGLATHGGAERQFDSIDHLLQAADSTLYRSKHRGRNRVTAYD 494


>gi|238025077|ref|YP_002909309.1| GGDEF domain-containing protein [Burkholderia glumae BGR1]
 gi|237879742|gb|ACR32074.1| GGDEF domain protein [Burkholderia glumae BGR1]
          Length = 509

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 82/169 (48%), Gaps = 12/169 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +L R D L+GL N  AF ++L S         + LS++F DID FK  ND +GHP 
Sbjct: 333 QQLHRLVRTDALTGLGNRRAFDATLHSEWLRAQRTGKPLSLLFVDIDQFKAYNDRYGHPA 392

Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD+V+  +   L      P   V R GGEEF      +    A  +   +R  I    I 
Sbjct: 393 GDEVLREVGRVLTQCVRRPSDSVARYGGEEFVVTLPETDAAGATHIGEHMRDSIYELAIP 452

Query: 210 ISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255
            S+     +T+S G+       P+++    +  AD ALY AK +GRNR+
Sbjct: 453 HSTSRHGRVTVSIGVVT-SGDTPVASDLAFVSLADTALYHAKTAGRNRI 500


>gi|229515744|ref|ZP_04405203.1| GGDEF family protein [Vibrio cholerae TMA 21]
 gi|229347513|gb|EEO12473.1| GGDEF family protein [Vibrio cholerae TMA 21]
          Length = 358

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 102/198 (51%), Gaps = 18/198 (9%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           I+V+NL   II  T+ +L       + +E  I ++R+  +   D L+G  N   F   + 
Sbjct: 167 IVVQNLFFFIILGTMLMLF------LFEE--IEWHRLRSIQ--DELTGAFNRRHFKEQVQ 216

Query: 124 SYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
              ++      +   DID+FKQIND++GH +GD VI ++   L  +  T   V R GGEE
Sbjct: 217 QKLKQSKQKSMVALVDIDHFKQINDSYGHDIGDSVITYVVRHLESLALTECLVARYGGEE 276

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIY 238
           FA  A  +  +  +   + +R  I +   ++   P  + ++I A I E  H+     ++ 
Sbjct: 277 FAIFARENDFERVSQALDSVRDAI-SVGFHVEQQPLKVSVSIGAVIFESSHE--YGEVLR 333

Query: 239 RADQALYVAKKSGRNRVV 256
           +AD+ALY AK+ GRNR++
Sbjct: 334 QADKALYQAKQQGRNRIM 351


>gi|218708303|ref|YP_002415924.1| hypothetical protein VS_0241 [Vibrio splendidus LGP32]
 gi|218321322|emb|CAV17272.1| hypothetical protein VS_0241 [Vibrio splendidus LGP32]
          Length = 471

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 17/173 (9%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDK 153
            + R+  L+ +D L+GL N   F     + NE+  + +  FDID FK +ND +GH VGD+
Sbjct: 298 EHKRLKNLAMLDPLTGLYNRRGFEVRFLNQNEEPIIGVGVFDIDDFKVVNDQYGHKVGDE 357

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           VI  ++  ++        V R GGEEF  A +G S +  + +   ++  I       ++G
Sbjct: 358 VICHVAQLMLNSVRQQDIVARFGGEEFVVAIMGESSELLSSIFERIQNDISLQSYRCATG 417

Query: 214 PSIHITISAG-----------IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             I+I++S G           I      + I +    +D+ LY AK SG+N+V
Sbjct: 418 DKINISVSGGATLYSLYKFDSIGHLWENQSIRS----SDEQLYKAKASGKNQV 466


>gi|160877236|ref|YP_001556552.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160862758|gb|ABX51292.1| diguanylate cyclase with GAF sensor [Shewanella baltica OS195]
          Length = 605

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 10/177 (5%)

Query: 89  ILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQIND 144
           +L++  +S N ++ +++  D L+GL N   F   L +  +      +   D+DYFK  ND
Sbjct: 424 VLQQALVSANTQLKEMAETDELTGLANRRPFTERLETVLQADIPAGLFMLDVDYFKSYND 483

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
            +GH  GD V+  ++D L      P    + R+GGEEFA      +  +   +A  L  +
Sbjct: 484 TYGHLEGDVVLKRVADALAQCDILPHNALLARIGGEEFALVVEHVTPAQLTAIATQLCYL 543

Query: 203 IENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E   I   + P   +TIS G      ++     ++ ++ RAD  LY AK  GRNRV
Sbjct: 544 VEQLNIPHQASPLAVVTISIGSVFLPLDKVSGLKMADVLRRADVCLYRAKDKGRNRV 600


>gi|159185329|ref|NP_355626.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
 gi|159140584|gb|AAK88411.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
          Length = 381

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 100/209 (47%), Gaps = 13/209 (6%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL-KELFISYNRISQLSRIDCLSG 111
           I L+ F+  +Y     L+  I    ++L       S+L  ++ ++ +R    +  D L+ 
Sbjct: 162 IELSEFFESDYAFYMQLAASIFGFLLAL-------SVLASQISVTVDRHLHAAEHDPLTD 214

Query: 112 LLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
           +LN   F   +  +       +I+  DID+FK+IND +GH  GD V+  LSD L      
Sbjct: 215 VLNRRGFDRRVPDFRNDTPDGAIIACDIDHFKRINDVYGHAAGDIVLIGLSDLLRRNAPD 274

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
              V R GGEEF     G +   A  LAN +R  + +     + G +  IT S G++   
Sbjct: 275 DALVARFGGEEFVVFLPGQTAAAAGQLANGMRTGLSSLDWR-NRGVTSQITASFGVSAVA 333

Query: 229 HKE-PISTIIYRADQALYVAKKSGRNRVV 256
             +  I   I RAD +LY AK+ GR++VV
Sbjct: 334 RGDHSIHDAIKRADDSLYAAKRGGRDQVV 362


>gi|262402293|ref|ZP_06078854.1| GGDEF domain protein [Vibrio sp. RC586]
 gi|262351075|gb|EEZ00208.1| GGDEF domain protein [Vibrio sp. RC586]
          Length = 352

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 72/137 (52%), Gaps = 4/137 (2%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L ++  D+DYFK IND +GH  GDKV+   +  L  V G      R+GGEEF       S
Sbjct: 208 LCLLVIDLDYFKSINDQYGHDTGDKVLIDTTRLLTQVVGDNNLY-RIGGEEFCVTLFDQS 266

Query: 189 EQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
             +A  +   LR I+  SQ   + G   I +TIS G+ E    + ++ ++  AD  LY A
Sbjct: 267 LTQAERVCERLRAIV--SQHLFAYGDKRIQLTISIGVCEYQSGDQLNDLLKFADIELYRA 324

Query: 248 KKSGRNRVVCFSDIENN 264
           KK+GRN+V  F   ++ 
Sbjct: 325 KKAGRNQVRLFRHTQDK 341


>gi|325982310|ref|YP_004294712.1| diguanylate cyclase [Nitrosomonas sp. AL212]
 gi|325531829|gb|ADZ26550.1| diguanylate cyclase [Nitrosomonas sp. AL212]
          Length = 266

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 72/131 (54%), Gaps = 6/131 (4%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L +V  D+D FK+INDNFGH  GD V+  L             V R GGEEF    L   
Sbjct: 135 LGVVLIDLDNFKKINDNFGHQYGDSVLINLVTVAKETLRPSDIVARFGGEEFVIL-LPEV 193

Query: 189 EQEAAILANDLRKIIENSQINIS---SGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
           E E A+    ++++  N + N S      SI IT SAG+A R   E  +++I RAD+ALY
Sbjct: 194 ELEDALTI--IQRLQNNLERNFSLQIDNESIPITFSAGVALRSFGEHQNSVISRADKALY 251

Query: 246 VAKKSGRNRVV 256
            AK++G+NR +
Sbjct: 252 QAKRTGKNRAI 262


>gi|86144250|ref|ZP_01062582.1| hypothetical protein MED222_07573 [Vibrio sp. MED222]
 gi|85837149|gb|EAQ55261.1| hypothetical protein MED222_07573 [Vibrio sp. MED222]
          Length = 487

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 107/210 (50%), Gaps = 16/210 (7%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYN--RISQLSRIDCLSGLLNHSAF 118
           LE  L +N SL+++S+ ++L++  +S   +  L++ +   +I  ++ +D L+GL N   F
Sbjct: 276 LEQELNKNHSLLLVSL-MTLVISLLSIIAVLVLYLRHRHLKILDVASLDYLTGLSNRRDF 334

Query: 119 ISSL-------GSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           IS +         Y  K + I+  DID+FK +ND  GH  GD+VI  ++  L        
Sbjct: 335 ISQVKMRILECSPYPLKGVGIILLDIDHFKSVNDLHGHNEGDRVICAVAKVLKQFANENR 394

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            + R GGEEF       +E +   L+ +LR+ +E  +     G  + +T+S G       
Sbjct: 395 LIARYGGEEFIFVTFDCNEYQLYELSEELRRSVEKIE-----GLVLPVTVSVGCRYANAL 449

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             I   I +AD+ALY AKK+GRN    + +
Sbjct: 450 FHIEGTIDQADKALYQAKKNGRNNTQVYRE 479


>gi|296167204|ref|ZP_06849610.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295897445|gb|EFG77045.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 700

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 85/162 (52%), Gaps = 12/162 (7%)

Query: 99  RISQLSR---IDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           R ++L+R    D L+ + N SA  S L    + ++   I+F DI++FK IND  GH  GD
Sbjct: 531 REAELARQATTDTLTAIANRSAAWSQLEQLDAADDGYGILFCDIEHFKSINDRHGHRAGD 590

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +++  ++ +L+   G    V R GG+EF        + E A+L + +   ++ + I ++ 
Sbjct: 591 ELLVEIARRLLAAVGDDGLVARWGGDEFLVITDAVDDPELALLTDRIASEVQRTPITLAG 650

Query: 213 GPSIHITISAGIAERCHK----EPISTIIYRADQALYVAKKS 250
           G  I I ++ G A   H+      +  ++ RADQA+Y  ++S
Sbjct: 651 GTEISIVLTVGRA--AHRSGDGRSVDAVLERADQAMYEQRRS 690


>gi|289670223|ref|ZP_06491298.1| hypothetical protein XcampmN_17466 [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 385

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 88/181 (48%), Gaps = 20/181 (11%)

Query: 96  SYNRISQLSRI---DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145
           S NR+  L+     D L+G+ N     ++L    E        LSI F D+D FK++ND 
Sbjct: 195 SENRMRHLAEQASRDALTGVFNRHQLGTALTHEFELASRQGWPLSIAFIDLDDFKRVNDA 254

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKII 203
            GH VGD+V+   +  L  +  T   V R GGEEF    L  +  +AA++  +  L +  
Sbjct: 255 HGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEF-LVILPKTPADAALMVIERILTETA 313

Query: 204 ENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 +  GP +HIT SAG+A     ER   E I  ++  AD  LY +K  GRNRV  +
Sbjct: 314 RTPMAQLPGGP-LHITFSAGLATHGGVERQF-ESIEHLLQAADSTLYRSKHRGRNRVTAY 371

Query: 259 S 259
            
Sbjct: 372 D 372


>gi|317133633|ref|YP_004092947.1| diguanylate cyclase [Ethanoligenens harbinense YUAN-3]
 gi|315471612|gb|ADU28216.1| diguanylate cyclase [Ethanoligenens harbinense YUAN-3]
          Length = 360

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 2/124 (1%)

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID FK IND +GH  GD V+  LSD +        F  R GGEEF     GS+ +E 
Sbjct: 238 LLDIDDFKVINDVYGHLAGDLVLKTLSDVVQQKLRVSDFAFRWGGEEFLLLVKGSAPEET 297

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           A +   +R+ +E++++     P I  T++ G      ++P+S+I +  DQ +Y+ K+ G+
Sbjct: 298 AHILERIRQAMEDTEVLFEQHP-IRFTVTIGADAFDIRDPLSSINH-CDQKMYMGKRGGK 355

Query: 253 NRVV 256
           NRVV
Sbjct: 356 NRVV 359


>gi|261339975|ref|ZP_05967833.1| putative GGDEF domain protein [Enterobacter cancerogenus ATCC
           35316]
 gi|288317893|gb|EFC56831.1| putative GGDEF domain protein [Enterobacter cancerogenus ATCC
           35316]
          Length = 410

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 75/158 (47%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F +     N       ++ S++  D D FK IND FGH  GD+V+  LS
Sbjct: 256 DSMTGLLNRRQFYAITEQTNPSHLPAQQQFSLLLVDTDRFKDINDVFGHLKGDEVLISLS 315

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L        +V R GGEEF      +  + A  +A  +R  +  + I I   P    T
Sbjct: 316 RTLEACCRKDDYVFRWGGEEFVLLLPRTPLETAMQIAETIRATV--AHITIPGLPR--FT 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRN+V+ 
Sbjct: 372 VSIGVARHNQGENIDELFKRVDDALYRAKNDGRNKVLA 409


>gi|329922613|ref|ZP_08278165.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
 gi|328941955|gb|EGG38238.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
          Length = 663

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 67/130 (51%), Gaps = 10/130 (7%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  DID FKQ+ND FGH  GDK++  +S  +           R GGEE A    G   
Sbjct: 530 SLIVVDIDEFKQVNDTFGHQRGDKILKQVSSIVKTTIRHSDIPARWGGEELAVYLPGLGI 589

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYV 246
           Q+A  +A  +R       + ++      +T+S GI+E      K  + ++ YRAD ALY 
Sbjct: 590 QQAVQVAERIR-------LRVAEETDPRVTVSCGISEWNWTNDKISVESLFYRADMALYE 642

Query: 247 AKKSGRNRVV 256
           AK  GRNR+V
Sbjct: 643 AKNGGRNRIV 652


>gi|229523526|ref|ZP_04412931.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|229337107|gb|EEO02124.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
          Length = 358

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 102/198 (51%), Gaps = 18/198 (9%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           I+V+NL   II  T+ +L       + +E  I ++R+  +   D L+G  N   F   + 
Sbjct: 167 IVVQNLFFFIILGTMLMLF------LFEE--IEWHRLRSIQ--DELTGAFNRRHFKEQVQ 216

Query: 124 SYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
              ++      +   DID+FKQIND++GH +GD VI ++   L  +  T   V R GGEE
Sbjct: 217 QKLKQSKQKSMVALVDIDHFKQINDSYGHDIGDSVITYVVRHLESLALTECLVARYGGEE 276

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIY 238
           FA  A  +  +  +   + +R  I +   ++   P  + ++I A I E  H+     ++ 
Sbjct: 277 FAIFARENDFERVSQALDSVRDAI-SVGFHVEQQPLKVSVSIGAVIFESSHE--YGEVLR 333

Query: 239 RADQALYVAKKSGRNRVV 256
           +AD+ALY AK+ GRNR++
Sbjct: 334 QADKALYQAKQQGRNRIM 351


>gi|237653310|ref|YP_002889624.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Thauera
           sp. MZ1T]
 gi|237624557|gb|ACR01247.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Thauera
           sp. MZ1T]
          Length = 1093

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 13/165 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI  L+R D L+GLLN SA+       +     ++++ +++F D+D FK +ND+ GH  G
Sbjct: 658 RIRYLARFDPLTGLLNRSAWQDHAQDVLRHAARHDDRCAVLFLDLDDFKTVNDSLGHAAG 717

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQIN 209
           D+++A ++ +L         V R+GG+EF    + L  +E+ A +    L  +    QI+
Sbjct: 718 DRLLAQVACRLGGCVRAEDLVARIGGDEFVILLSRLAHAEEPARVAERVLDALARPLQID 777

Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
             S P + +  S GIA        I T++  AD A+Y AK+SGRN
Sbjct: 778 --SQP-LRVGASIGIALYPADGGEIDTLLKHADTAMYEAKESGRN 819


>gi|104779483|ref|YP_605981.1| sensory box protein [Pseudomonas entomophila L48]
 gi|95108470|emb|CAK13164.1| putative sensory box protein [Pseudomonas entomophila L48]
          Length = 329

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 77/130 (59%), Gaps = 4/130 (3%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+ +  DID FKQIND++GH  GD+V+  ++D    V       GR+GGEEFAA   G +
Sbjct: 200 LAFLLLDIDDFKQINDSYGHQEGDQVLQRIADAGKAVLRRGDQFGRIGGEEFAAVFPGCT 259

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHK-EPISTIIYRADQALYV 246
            Q A  +A  L++ I+  +++ S     + +T+S G+     + E + ++  RAD A+Y 
Sbjct: 260 AQMAEQIAERLQREIQ--RLSFSHEQQTYGVTVSQGLTGLTDEDEKLDSLFARADAAMYR 317

Query: 247 AKKSGRNRVV 256
           AK+ G+N++V
Sbjct: 318 AKRQGKNQIV 327


>gi|325293539|ref|YP_004279403.1| diguanylate cyclase [Agrobacterium sp. H13-3]
 gi|325061392|gb|ADY65083.1| diguanylate cyclase [Agrobacterium sp. H13-3]
          Length = 380

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 9/165 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL-GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           S  ++  L+  D L+G+ N   F  ++ G      + +  DID+FK IND FGH VGD V
Sbjct: 214 SERKLLVLANTDPLTGVKNRRFFFQAMPGVPGPNDAAMLLDIDHFKSINDRFGHAVGDSV 273

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++ ++         + R GGEEF     G+  Q+A ++   +R  I  ++++   G 
Sbjct: 274 LQEVAKRIGGSIRGGDVLARYGGEEFIIFLPGAGVQKACMIGERIRDAIAITEVD-CGGL 332

Query: 215 SIHITISAGIAE----RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + +TIS G+A     RC    + T+   AD+ALY AK  GRN V
Sbjct: 333 RVGVTISIGVATSGDMRCD---LQTLAEMADRALYRAKTDGRNCV 374


>gi|303326574|ref|ZP_07357017.1| developmental regulator MorA [Desulfovibrio sp. 3_1_syn3]
 gi|302864490|gb|EFL87421.1| developmental regulator MorA [Desulfovibrio sp. 3_1_syn3]
          Length = 546

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 88/168 (52%), Gaps = 20/168 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+S  +R+D L+GL N +A        +++  + + + +    DID FK++ND+FGH VG
Sbjct: 378 RLSAQARLDPLTGLCNKAATEQHISETLAACKAEDRRFAFFILDIDDFKRVNDDFGHAVG 437

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA----AALGSSEQEAAILANDLRKIIENSQ 207
           D VI   + +L   F      GR+GG+EFAA          E++A+ L   LRK      
Sbjct: 438 DMVIREFALELKRQFRDTDIAGRIGGDEFAAFLPVPGRAWVERKASKLGAALRKSF---- 493

Query: 208 INISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRN 253
             +S   +  IT S GI  A R  K+  +T+   AD ALY AKK G++
Sbjct: 494 --MSETYAFGITASIGIALAPRDGKD-FATLYRNADAALYQAKKRGKD 538


>gi|269968397|ref|ZP_06182415.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269827024|gb|EEZ81340.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 525

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D ++GLLN       LG +   N   S++  DID+FK +NDN+GH VGD ++   +  + 
Sbjct: 370 DSMTGLLNRRGLDKVLGLFKQENTAFSVLALDIDHFKSVNDNYGHDVGDNLLREFAQLMK 429

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
               +   + R GGEEF      +    A  +A  +R  +E     +       +T+S G
Sbjct: 430 DQARSNDHLCRSGGEEFMMFLEKTDVNHAMDVAERIRHNVEQHDFQVVG----KVTVSLG 485

Query: 224 IAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           ++  + +  PI  ++  AD ALY AK +GRNR     D +
Sbjct: 486 VSHWKGNDTPIEAVMKDADNALYKAKHNGRNRTELGDDAQ 525


>gi|238798257|ref|ZP_04641742.1| Predicted diguanylate cyclase [Yersinia mollaretii ATCC 43969]
 gi|238717895|gb|EEQ09726.1| Predicted diguanylate cyclase [Yersinia mollaretii ATCC 43969]
          Length = 366

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 123/255 (48%), Gaps = 23/255 (9%)

Query: 31  FSIFF-------SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           F+IFF         FIA  +  A   L  I L  F  + + ++  L L +I  ++  L+ 
Sbjct: 113 FTIFFISTIALSDNFIAFCLHTAPATLTVIFLDDFQNI-FRIIFTLMLPLIGFSLHHLMS 171

Query: 84  YISGSILKELFIS-YN---RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFD 135
             S    ++L    YN   + S LS ID L+ L N     + L +   +      ++  D
Sbjct: 172 RRSDDFTRKLVARLYNEREKFSDLSMIDPLTSLYNRRGLENKLETLLAQSPGNHYVLLLD 231

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK  NDN+GH +GD+ +  ++  +     +   V R GGEEF       SE+ A+ L
Sbjct: 232 IDHFKAYNDNYGHTMGDQALVRVAAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYASQL 291

Query: 196 ANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           A  +R+ +    I    +   S  +T+SAGI+       +++ +  AD+ALY AKK GRN
Sbjct: 292 AERVRQRVLGLDIPHVFNHKVSTTVTLSAGISP-LQAYDLASSLKAADEALYRAKKDGRN 350

Query: 254 RVV----CFSDIENN 264
           +V      FS++E++
Sbjct: 351 KVAFAGKKFSNVESS 365


>gi|237800927|ref|ZP_04589388.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023783|gb|EGI03840.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 523

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 11/166 (6%)

Query: 107 DCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L      +  E+  LS++  D D+FK+ ND++GH  GD+ +  L+
Sbjct: 336 DKLTGLANRRRFDQFLDLEFKRARRERSTLSLILIDADHFKRYNDHYGHLAGDECLVTLA 395

Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +      P  V  R GGEE A    G+ E  A  +A ++   I + QI  +  P   +
Sbjct: 396 RMVEQCIRRPADVAARYGGEEIAVVLPGTDESNARQVAENILHAIGDRQIEHADSPFGIV 455

Query: 219 TISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           T+S G+A       +     +I  AD+ALY AK  GRNRV   SDI
Sbjct: 456 TVSLGVATFMGTDRRLDQRGLIELADRALYAAKSQGRNRVNAASDI 501


>gi|160881794|ref|YP_001560762.1| diguanylate cyclase [Clostridium phytofermentans ISDg]
 gi|160430460|gb|ABX44023.1| diguanylate cyclase [Clostridium phytofermentans ISDg]
          Length = 371

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 82/163 (50%), Gaps = 15/163 (9%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN      +L            ++ ++  D+D FK+ ND+FGHP GDK +  ++
Sbjct: 197 DPLTGLLNRRGLDRNLEVLLPYCIRSGIRIGLMIVDVDNFKRYNDSFGHPQGDKCLKMVA 256

Query: 160 DQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH- 217
            ++      +     R+GGEEF        E E    A  +R  IEN  +NI   P++  
Sbjct: 257 AEIRKTARRSSDLTARIGGEEFVILVYDEKESELISFAEKIRTNIEN--LNIKHSPTLGA 314

Query: 218 --ITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +T+S G++       + +S +   ADQ+LY AKKSGR+ VV
Sbjct: 315 AVVTVSIGVSSVVPTTMQCMSELYKSADQSLYTAKKSGRDVVV 357


>gi|138895392|ref|YP_001125845.1| hypothetical protein GTNG_1736 [Geobacillus thermodenitrificans
           NG80-2]
 gi|196249158|ref|ZP_03147857.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Geobacillus sp. G11MC16]
 gi|134266905|gb|ABO67100.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196211387|gb|EDY06147.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Geobacillus sp. G11MC16]
          Length = 608

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 93/182 (51%), Gaps = 12/182 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           + ++    Y  +S  +  D L+GL NH  F  +L           + L++   D+D FK+
Sbjct: 220 VFRKFLYLYQLVSNRANKDHLTGLYNHGFFKETLKEQFADCKRLKQPLTLALLDLDDFKK 279

Query: 142 INDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND  GH  GD+++ F    L   V GT   + R GGEEFA     +++++A +  N LR
Sbjct: 280 YNDRNGHLQGDRLLMFFGKLLQKAVEGTNFTIARYGGEEFAILMPNTTKEDAYVFLNRLR 339

Query: 201 KIIENSQIN-ISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257
           K + ++  + +   P   ++ S GIAE   K+   +  +I+RADQALY AK  G+N V  
Sbjct: 340 KQVNDTYFDGVEHIPYRCLSFSCGIAE-MEKDMYESDELIHRADQALYYAKAQGKNNVQL 398

Query: 258 FS 259
           + 
Sbjct: 399 YD 400


>gi|332991744|gb|AEF01799.1| response regulator receiver domain-containing protein [Alteromonas
           sp. SN2]
          Length = 576

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 81/177 (45%), Gaps = 15/177 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIN 143
           K L  S   + +L+  D L+ L N         A  SS    +  +++   D+D+FK IN
Sbjct: 401 KALRASNEMLKKLAANDGLTNLPNRRSIDLFVDASFSSEADNHHHIAVALIDLDHFKNIN 460

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGH  GD V+  ++  L  +       GR GGEEFA      SEQ  +    D+ K I
Sbjct: 461 DTFGHEAGDTVLIEIAKILQPLNSKECMAGRFGGEEFAIIQQNVSEQHFSDTLADIHKQI 520

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIY---RADQALYVAKKSGRNRVVC 257
               +   SG  I   I   I         + I+Y   RAD+ALY AK +GRNR++ 
Sbjct: 521 NTLSLQQLSGLKIGACIGWTICTDA-----ADIVYAFRRADKALYKAKDAGRNRIIA 572


>gi|229591014|ref|YP_002873133.1| putative GGDEF domain signaling protein [Pseudomonas fluorescens
           SBW25]
 gi|229362880|emb|CAY49790.1| putative GGDEF domain signaling protein [Pseudomonas fluorescens
           SBW25]
          Length = 547

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 17/166 (10%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+G+ N   F   L              +++  D DYFK++ND++GH +GD V
Sbjct: 388 KLATHDALTGVYNRRRFDEKLAENSLLFQRTGRTFALLLIDADYFKRVNDSYGHAIGDDV 447

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSG 213
           +  L+  +        FV R GGEEFA       E ++  ++A  +R  +E +       
Sbjct: 448 LCQLAALIKNTTRATDFVARYGGEEFAVLLPEVEEPDSPDVVAEKIRVAVEAAVF----- 502

Query: 214 PSI-HITIS--AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           P++ H+T+S   G+AE   ++  S ++ RAD  LY AK +GRNRV 
Sbjct: 503 PTVGHVTVSIGVGVAEPSDRD-TSALLKRADMQLYEAKAAGRNRVA 547


>gi|226225891|ref|YP_002759997.1| putative two-component response regulator [Gemmatimonas aurantiaca
           T-27]
 gi|226089082|dbj|BAH37527.1| putative two-component response regulator [Gemmatimonas aurantiaca
           T-27]
          Length = 491

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 10/167 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ QL++ D L+ LLN  A    + +       Y+  L+++  D+D+FK++ND +GH VG
Sbjct: 323 RLEQLAQTDPLTQLLNRRALTERITAEMERALRYDSTLALLMIDLDHFKKVNDTYGHLVG 382

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  +   L           R GGEEF      + +  A   A  +R  +E       
Sbjct: 383 DDVLRDVGQLLGHTIRGSDITARYGGEEFLVLLPETDDAGAVAFAERIRVAMEEHPFARD 442

Query: 212 S-GPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S    + +T S G+A       E +  +  RAD ALY AK  GRNRV
Sbjct: 443 SMAEPLKLTASIGVAVFPAARIENVEDLFARADAALYRAKAEGRNRV 489


>gi|116251453|ref|YP_767291.1| transmembrane GGDEF sensory box protein [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115256101|emb|CAK07182.1| putative transmembrane GGDEF sensory box protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 471

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148
           S   +  L+  D L+G+LN    +       E+       ++++ FD+D+FK++ND FGH
Sbjct: 262 SERHLRALTLTDSLTGVLNRRGLLGYFDGIQERAHNEQRQVAVILFDLDHFKRVNDRFGH 321

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+   +          +F GR+GGEEFAA A  + + EA  +A  +R   E  ++
Sbjct: 322 QSGDAVLTAFARMARQYIPNNIF-GRMGGEEFAAFAAVADQTEAEAIAEAIR--TEFCRL 378

Query: 209 NISSGPSI-HITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
            +S+G +I  +T+S GIA     E  I  +I  AD+ALY AK +GRN  V F
Sbjct: 379 PVSTGEAIVPVTVSIGIALASSIEANIDKLISAADRALYAAKAAGRNCTVTF 430


>gi|315636037|ref|ZP_07891296.1| GGDEF domain protein [Arcobacter butzleri JV22]
 gi|315479693|gb|EFU70367.1| GGDEF domain protein [Arcobacter butzleri JV22]
          Length = 415

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 12/211 (5%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           Y +E  + EN  ++  +I     L      + KEL +    + +  + D L+ LLN  A+
Sbjct: 209 YKIENSIKENNKILSNNIEKFKFLNRQIEELQKELIL----VKEEQQFDFLTSLLNRRAY 264

Query: 119 ISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              +    ++        +IVF DID+FK IND +GH  GD ++   +  L  +      
Sbjct: 265 QEEVKKVEKQFNIFGSDFAIVFIDIDHFKNINDVYGHACGDAILKNFATILKDLTRKEDI 324

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
           + R GGEEF A     SE E       ++  ++N  + I     + I  SAG+A R    
Sbjct: 325 ISRYGGEEFVALVNYQSETEIQRYIKRVKTALQN-HVFIYKTQQLQIEFSAGVAFRNKYH 383

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             +     AD+ LY AK  GRN+V+   +IE
Sbjct: 384 SFAEAEASADKLLYKAKNKGRNKVIFDDEIE 414


>gi|150021404|ref|YP_001306758.1| diguanylate cyclase [Thermosipho melanesiensis BI429]
 gi|149793925|gb|ABR31373.1| diguanylate cyclase [Thermosipho melanesiensis BI429]
          Length = 1339

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 83/165 (50%), Gaps = 17/165 (10%)

Query: 106  IDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            +D L+ L     F   +  Y        E+LSI+  D+D+FK+IND +GH +GD+V+  +
Sbjct: 1179 LDPLTKLYTRYYFAEKIDEYFEKAKKFKERLSIIMCDLDHFKKINDKYGHLLGDEVLREI 1238

Query: 159  SDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            +  L   V      VGR GGEEF      SS   A  +A  LRK IE     I   P   
Sbjct: 1239 AKILKENVRRNNDIVGRYGGEEFIILLPNSSLNYAKEIAERLRKKIE----AIDKFP-FK 1293

Query: 218  ITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +T+S GIA   E   K     + Y AD ALY AK+ GRNRV+ F 
Sbjct: 1294 VTMSFGIASYPEVLVKTSDELVGY-ADDALYKAKELGRNRVIVFE 1337


>gi|117618694|ref|YP_856635.1| GGDEF domain-containing protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560101|gb|ABK37049.1| GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 457

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN----EKLSIVFFD 135
           +LL  +     + L  +   + + + +D L+GL +   F   L +          ++  D
Sbjct: 262 ILLSLVHTRQQQALLATQRELERRANLDALTGLDSRHHFEQQLAARACRSARPWQLLLID 321

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D FKQIND  GHP GD ++  +   +          GRLGG+E A   + +S+   A  
Sbjct: 322 LDNFKQINDRHGHPAGDAMLRAVGRVIRESLPPAGLAGRLGGDELALLVMETSQTLPAC- 380

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              L++ + ++   ++ GP   I++S G+      E       RAD+ALY AK++GR R 
Sbjct: 381 CQTLQQRVADATRPLAGGP---ISLSIGLTSLQQGERFEQAYPRADRALYAAKQAGRQR- 436

Query: 256 VCFSDIENN 264
            C  +  ++
Sbjct: 437 ACIQEPHHS 445


>gi|323491785|ref|ZP_08096960.1| hypothetical protein VIBR0546_11352 [Vibrio brasiliensis LMG 20546]
 gi|323313920|gb|EGA67009.1| hypothetical protein VIBR0546_11352 [Vibrio brasiliensis LMG 20546]
          Length = 655

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 91/177 (51%), Gaps = 14/177 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFK 140
           S LKE+     R+  L+  D L+GL N        S  +S   S  + L++++ D+D FK
Sbjct: 481 SNLKEM----ERLEHLAHHDSLTGLANRAKLYRVLSEVLSGERSGKDGLALLYLDLDGFK 536

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GH  GD+V+  +SD+L+    +   V RL G+EF      +++Q  +ILA  L 
Sbjct: 537 GVNDTYGHDAGDEVLKQVSDRLLSQVRSNDLVARLSGDEFVIMINSTTKQSVSILAERLV 596

Query: 201 KIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +I+     I  G  + +  S G+     + + +  ++  AD A+Y AK SG+ R V
Sbjct: 597 ALIQKE--IIYKGRQLKVGASIGVHFVEDYDKSMDELLKAADTAMYQAKASGKGRFV 651


>gi|254720404|ref|ZP_05182215.1| response regulator PleD [Brucella sp. 83/13]
 gi|265985422|ref|ZP_06098157.1| response regulator receiver modulated diguanylate cyclase [Brucella
           sp. 83/13]
 gi|306839019|ref|ZP_07471840.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653]
 gi|264664014|gb|EEZ34275.1| response regulator receiver modulated diguanylate cyclase [Brucella
           sp. 83/13]
 gi|306405925|gb|EFM62183.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653]
          Length = 461

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 9/170 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S  R    S  D L+GL N           ++      + LSI+  D+D+FKQ+N+ +GH
Sbjct: 288 SMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQYGH 347

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+   S +L         + R GGEEF      +  Q A  +A  +R I+  +  
Sbjct: 348 GAGDHVLREFSGRLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRGIVAEAPF 407

Query: 209 NISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            + SG   + +T+S G+A  R   + +  +  RA  AL  AK+SGRNR+V
Sbjct: 408 VLDSGKRRVSMTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIV 457


>gi|229529552|ref|ZP_04418942.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229333326|gb|EEN98812.1| GGDEF family protein [Vibrio cholerae 12129(1)]
          Length = 385

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 18/225 (8%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF----IS 96
            V+    I + Y+    +  L  + V   S +++    +L    I G++L  LF    I 
Sbjct: 163 AVVLAVMIVMLYVPFVAYQTLPLLAVFRASTIVVQ---NLFFFIILGTMLM-LFLFEEIE 218

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGD 152
           ++R+  +   D L+G  N   F   +    ++      +   DID+FKQIND++GH +GD
Sbjct: 219 WHRLRSIQ--DELTGTFNRRHFKEQVQQKLKQSKQKSMVALVDIDHFKQINDSYGHDIGD 276

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            VI ++   L  +  T   V R GGEEFA  A  +  +  +   + +R  I +   ++  
Sbjct: 277 SVITYVVRHLESLALTECLVARYGGEEFAIFARENDFERVSQALDSVRDAI-SVGFHVEQ 335

Query: 213 GP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            P  + ++I A I E  H+     ++ +AD+ALY AK+ GRNR++
Sbjct: 336 QPLKVSVSIGAVIFESSHE--YGEVLRQADKALYQAKQQGRNRIM 378


>gi|225872142|ref|YP_002753597.1| GGDEF domain protein [Acidobacterium capsulatum ATCC 51196]
 gi|225792482|gb|ACO32572.1| GGDEF domain protein [Acidobacterium capsulatum ATCC 51196]
          Length = 367

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 90/190 (47%), Gaps = 14/190 (7%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFF 134
           L +I+  +   L    + +  ++  D L+GLLN  AF       + SL       +++  
Sbjct: 169 LAFIAAIMWLSLSAQRDELRLMAETDGLTGLLNRRAFEEILRHELRSLDGSKADTALLLL 228

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID FK IND+ GH  GD+VI  +S  +         + R GG+EF       +  +A  
Sbjct: 229 DIDQFKTINDDLGHLAGDEVIRRVSTAIKTAARPSDVLARFGGDEFVVLLRHLNGLQAMA 288

Query: 195 LANDLRKIIENSQINISSGPSIHITISA--GIAERCHKEPISTIIYRADQALYVAKKSGR 252
           +A   R  I   Q     G   H+TI+A  G+A     +   ++I RAD+ALY +K +GR
Sbjct: 289 VAERFRFEIAALQ-----GLPNHLTITASVGLAFLHGMDSPYSLIGRADEALYRSKSNGR 343

Query: 253 NRVVCFSDIE 262
           NRV    D E
Sbjct: 344 NRVSVGDDFE 353


>gi|295694984|ref|YP_003588222.1| diguanylate cyclase/phosphodiesterase [Bacillus tusciae DSM 2912]
 gi|295410586|gb|ADG05078.1| diguanylate cyclase/phosphodiesterase [Bacillus tusciae DSM 2912]
          Length = 581

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 5/149 (3%)

Query: 107 DCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+G+ N   F   L    +   + +++F D D FK INDN GH  GDK++  L   L 
Sbjct: 165 DSLTGVYNRRRFQEKLADILNRTARGTLLFIDFDNFKAINDNLGHRAGDKLLGELIGSLR 224

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
            V     F+GR+GG+EFA     ++ +EA +L   + ++    ++ +  G  + +T S G
Sbjct: 225 GVVEGRGFLGRIGGDEFALFLPEATIEEAKVLGAAIERVFRRHRV-LLDGRRVIMTASIG 283

Query: 224 IAE-RCHKEPISTIIYRADQALYVAKKSG 251
           IAE       +  ++ RAD A+Y AK++G
Sbjct: 284 IAEFPTSGSTVEQLLARADTAMYTAKRTG 312


>gi|322420564|ref|YP_004199787.1| diguanylate cyclase [Geobacter sp. M18]
 gi|320126951|gb|ADW14511.1| diguanylate cyclase [Geobacter sp. M18]
          Length = 459

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 87/179 (48%), Gaps = 12/179 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
            GS+  +    YN    L  ID L+GL N+          +     Y   L ++F DID 
Sbjct: 272 QGSLALDNAARYNIAKDLLYIDELTGLYNYRYLDVVLERELKRCERYGSNLGVLFLDIDL 331

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +NDNFGH +G +V+  +   +         V R GG+E+    + +  + AAI+A  
Sbjct: 332 FKSVNDNFGHLIGSRVLREVGMLVRKSVRDVDAVIRYGGDEYTIVLVETGMEGAAIVAER 391

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNR 254
           +R+ IE      + G +I +T+S G A  C  +   T   ++  ADQA+Y  K +G+NR
Sbjct: 392 IRRTIEAHTFAKADGLAIKLTVSLGYA--CAPDDAITKAELLEMADQAMYRGKSAGKNR 448


>gi|261405770|ref|YP_003242011.1| GAF sensor-containing diguanylate cyclase [Paenibacillus sp.
           Y412MC10]
 gi|261282233|gb|ACX64204.1| diguanylate cyclase with GAF sensor [Paenibacillus sp. Y412MC10]
          Length = 663

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 67/130 (51%), Gaps = 10/130 (7%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  DID FKQ+ND FGH  GDK++  +S  +           R GGEE A    G   
Sbjct: 530 SLIVVDIDEFKQVNDTFGHQRGDKILKQVSSIVKTTIRHSDIPARWGGEELAVYLPGLGI 589

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYV 246
           Q+A  +A  +R       + ++      +T+S GI+E      K  + ++ YRAD ALY 
Sbjct: 590 QQAVQVAERIR-------LRVAEETDPRVTVSCGISEWNWTNDKISVESLFYRADMALYE 642

Query: 247 AKKSGRNRVV 256
           AK  GRNR+V
Sbjct: 643 AKNGGRNRIV 652


>gi|209549026|ref|YP_002280943.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209534782|gb|ACI54717.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 424

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 11/173 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-ISSLGSYNEKL------SIVFFDIDYFKQINDNFGHP 149
           YN + + +  D L+G+ + +   + +     E L      +++  D D+FK +ND +GH 
Sbjct: 251 YNDLLERTGRDMLTGVYDRTRMEVEAPLMMREALRQGLYATVLIIDADHFKDVNDGYGHL 310

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+  ++ +L     +   + R GGEEF A   G+  +EA +LA  LR  I  S   
Sbjct: 311 QGDEVLKAIAARLGTTLRSSDRIFRFGGEEFVAVCPGTDHEEALLLAERLRWTIATSVKT 370

Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
               P   +T+S G+A         + ++  AD  LY AKKSGRN VV  S +
Sbjct: 371 PDDKP---VTVSIGVATADEDGVDFTAVLTAADGRLYAAKKSGRNCVVGRSGV 420


>gi|21242173|ref|NP_641755.1| hypothetical protein XAC1420 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21107589|gb|AAM36291.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 507

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 87/180 (48%), Gaps = 18/180 (10%)

Query: 96  SYNRISQLSRI---DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145
           S NR+  L+     D L+G+ N     ++L    E        LSI F D+D FK++ND 
Sbjct: 317 SENRMRHLAEQASRDALTGVFNRHQLGTALTHEFELASRQGWPLSIAFIDLDDFKRVNDA 376

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKII 203
            GH VGD+V+   +  L  +  T   V R GGEEF    L ++  +AA++  +  L +  
Sbjct: 377 HGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEF-LVILPNTPADAALMVIERILAETA 435

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRVVCFS 259
                 +  GP +HIT SAG+A     E     I  ++  AD  LY +K  GRNRV  + 
Sbjct: 436 RTPMAQLQGGP-LHITFSAGLATHGGAERQFDSIDHLLQAADSTLYRSKHRGRNRVTAYD 494


>gi|94984488|ref|YP_603852.1| diguanylate cyclase [Deinococcus geothermalis DSM 11300]
 gi|94554769|gb|ABF44683.1| diguanylate cyclase [Deinococcus geothermalis DSM 11300]
          Length = 563

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 81/167 (48%), Gaps = 10/167 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGD 152
           S  R    +R D L+GLLN      SL         L +  FDID FK +ND+  H  GD
Sbjct: 392 SVRRAEAQARQDALTGLLNRRGLQDSLAQLTPDAAPLLLALFDIDDFKSVNDHHSHATGD 451

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +  ++++L  +      + R GGEEF     G++  EA  L   LR+ IE   ++  S
Sbjct: 452 AALQGVANRLSALAPEGSLLARYGGEEFLLVLPGANPAEAPALIERLRQGIE---VHNWS 508

Query: 213 G--PSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              P + +T+SAG  + E      +     +AD  LY AK++GRNR+
Sbjct: 509 PLLPGMSLTVSAGYTLTEGLDDASLHAAFQQADDHLYQAKRAGRNRI 555


>gi|330010583|ref|ZP_08306815.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
 gi|328534481|gb|EGF61070.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
          Length = 302

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 74/153 (48%), Gaps = 10/153 (6%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GLLN   F   + +         ++  DID+FK IND  GH  GD+V+  LS  L 
Sbjct: 140 DPLTGLLNRREFHRLVEAPTFIPRGYCLLLIDIDHFKSINDIHGHQKGDEVLLVLSRILE 199

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   + R GGEEF      S    A ILA  +R+ +   Q       ++ +T+S G
Sbjct: 200 TSVDREDKIYRWGGEEFLLFLPHSPIGRALILAEGIRQAVSEYQ-------TLSVTVSIG 252

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +AE    E +  +  R D+ALY AK  GRNRV 
Sbjct: 253 VAEHHDGETVDQLFSRVDKALYAAKNDGRNRVT 285


>gi|289676297|ref|ZP_06497187.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 659

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 97/187 (51%), Gaps = 18/187 (9%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEK----LSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++ S    NE+    L +
Sbjct: 254 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 310

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189
           +F D+D FKQIND+ GH  GD+V+ ++++Q          + R+GG+EF      L   E
Sbjct: 311 LFMDLDGFKQINDSLGHEAGDQVLLWVAEQFKATMRPYDVLARIGGDEFTVVIDGLDYPE 370

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247
           Q A I    + ++    Q++   G  I +  S GIA    C    +  ++  AD A+Y A
Sbjct: 371 QAAKIAEKLIERVSGRRQVD---GVEITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 426

Query: 248 KKSGRNR 254
           K++GR +
Sbjct: 427 KRAGRQQ 433


>gi|209808968|ref|YP_002264506.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238]
 gi|208010530|emb|CAQ80898.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238]
          Length = 481

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 12/217 (5%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLV-IISITISLLLGYISGSILKELFISYNRISQLSRID 107
           F+  +    ++  +Y  +  +S + +IS+ ++LL+   +  +L +L    +   +L+  D
Sbjct: 265 FILIVSKPKYFWADYAYLSIISFILVISLVVALLMK--NTFLLSKLLSQNDHYFKLALHD 322

Query: 108 CLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+G+LN   F  +     E        +  V FDIDYFKQIND +GH  GD+V+   + 
Sbjct: 323 ELTGVLNRRGFEKNTKQVLELAKSSPTSIVSVLFDIDYFKQINDTYGHDKGDEVLRSFT- 381

Query: 161 QLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           Q+     T   V  RLGG+EF       + Q+A    N+L   I   ++    G     +
Sbjct: 382 QICQAHITHCDVFARLGGDEFVMLLPNQNGQQATKCINELLDKIRAIRVETPLGSISVSS 441

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                  R   E I+  + RAD+ALY AKK GRN VV
Sbjct: 442 SIGMSEVRSPNESIAKWLERADKALYQAKKQGRNCVV 478


>gi|160893966|ref|ZP_02074745.1| hypothetical protein CLOL250_01521 [Clostridium sp. L2-50]
 gi|156864344|gb|EDO57775.1| hypothetical protein CLOL250_01521 [Clostridium sp. L2-50]
          Length = 1004

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 11/159 (6%)

Query: 105 RIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           R D L+GLLNH+AF + +      G +N  +  +  D+D FKQ ND +GH  GDK +  +
Sbjct: 843 RTDSLTGLLNHAAFRNDMEMKLLSGDFNAMM--IMIDVDKFKQYNDTYGHHNGDKYLILV 900

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIH 217
           +  L+       F  R+GG+EFA     +       +    ++I +   + + S      
Sbjct: 901 AQTLLASLRNEDFASRMGGDEFAVMMFFNKSVPEKAIKEHAQQIFDKVNLTVKSAEGGTG 960

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           I++ A IA+   +   + +   AD ALY AK+SGR R+V
Sbjct: 961 ISMGAVIAKS--EVTFNRLYEEADNALYEAKESGRGRLV 997


>gi|144898358|emb|CAM75222.1| (GGDEF domain) [Magnetospirillum gryphiswaldense MSR-1]
          Length = 619

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 11/162 (6%)

Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GL N           ++++     ++ I+  D+D+FK +ND +GH  GD VI  ++
Sbjct: 451 DPMTGLNNRRFLEEYVDTLVANVQRRQSQVGIMMLDLDFFKMVNDTYGHDAGDAVIKAMA 510

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HI 218
             L         V R GGEEF    L +S ++A  +A  +R  +E   ++I +G ++   
Sbjct: 511 KVLRQAVRASDMVIRYGGEEFLIVLLDASPEQADQIAEKIRSTVE--ALDIQAGTTVLRK 568

Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           TIS G+A+     +     +  AD ALY AK +GRN+VV F+
Sbjct: 569 TISIGVADFPSDSDTFWQAVKFADVALYQAKDTGRNKVVRFN 610


>gi|90419209|ref|ZP_01227119.1| GGDEF domain [Aurantimonas manganoxydans SI85-9A1]
 gi|90336146|gb|EAS49887.1| GGDEF domain [Aurantimonas manganoxydans SI85-9A1]
          Length = 271

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 76/163 (46%), Gaps = 8/163 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q +  D L+GL N   F      Y          + ++ FD+D FK +ND +GH VGD
Sbjct: 96  LEQAALTDPLTGLRNRRCFDRMFEEYVVAFDRVGRPVGLLLFDLDKFKAVNDTYGHDVGD 155

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  ++  L         V RLGGEEFA      S       A  +R+ I    I +  
Sbjct: 156 EVLKVVAGCLTDFARHRDVVARLGGEEFAIIVTNMSAPGLVSFAERIRQAISGLTIRVGD 215

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              +  T+S G+A     +  + I  RAD  LY AK++GRNRV
Sbjct: 216 -VKLRTTVSVGLASSEPGDGCAAIFKRADVNLYKAKQAGRNRV 257


>gi|56476007|ref|YP_157596.1| hypothetical protein ebA1086 [Aromatoleum aromaticum EbN1]
 gi|56312050|emb|CAI06695.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 581

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 122/271 (45%), Gaps = 33/271 (12%)

Query: 6   KDFLSIWLCHEKNLESFSPHTFMIYF-SIFFSIFIATVIFIANIFLFYI-GLTPFYGLEY 63
           +  L IW         F P   +I    +     +A +I     +  +I G+   +G+  
Sbjct: 295 RAMLDIW--------GFEPDENLIGMRDVVLQSRVAPLIEQPEAYFEHIAGVLQMHGVSE 346

Query: 64  I---------LVENLSLVIISITISLLLG--YISGSILKELFISYNRISQLSRIDCLSGL 112
                     +V ++S V+ S      +G  +I   + +E  I+  ++ +L+  D L+ L
Sbjct: 347 THEIGLCDGRIVTDVSTVVESAEGQRWIGRVWIYEDVTEERKIA-RKMVELAERDPLTNL 405

Query: 113 LNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-V 164
            N   F   L         +  ++ ++  D+D FK IND FGH  GD V+  LS  +  V
Sbjct: 406 FNRRRFHEELNRLLAEATRHQVRVGLIAIDLDGFKPINDEFGHQAGDAVLVGLSRAVAGV 465

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           +    MF  RLGG+EF      + E++   LA  + ++IE  +     G S+++T S GI
Sbjct: 466 IRRNEMFF-RLGGDEFGVLVPDAEERDLCELARRILEVIETQRFEF-EGRSMNLTASLGI 523

Query: 225 AE-RCHKEPISTIIYRADQALYVAKKSGRNR 254
           A    H +    +I  ADQA+Y +K  GRNR
Sbjct: 524 ALFPQHADNPEQLIAIADQAMYCSKNRGRNR 554


>gi|172058864|ref|YP_001815324.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15]
 gi|171991385|gb|ACB62307.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15]
          Length = 558

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 86/171 (50%), Gaps = 18/171 (10%)

Query: 104 SRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           SR D L+ L N  AF         S    LSIV FDID+FK +ND +GH VGD V+  L 
Sbjct: 393 SRTDALTELANSRAFYEEGAQQFASDRYPLSIVLFDIDHFKYVNDTYGHKVGDLVLRELG 452

Query: 160 DQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            ++  +      +F  R GGEEF      S + +A  +A ++R  + +    +  G  + 
Sbjct: 453 RRIRSIQQKKHNVFAARYGGEEFVLLLHQSPQNQAIDVAEEVRHAVLDRPF-VVDGHRLS 511

Query: 218 ITISAGI------AERCHKEPISTIIYRADQALYV-AKKSGRNRVVCFSDI 261
           ITIS G+      +ER  +E +     +AD ALYV  K +GRN    ++++
Sbjct: 512 ITISLGVDTVEYQSERSFEESLR----QADHALYVGGKHNGRNCTAHYANL 558


>gi|311104056|ref|YP_003976909.1| diguanylate cyclase [Achromobacter xylosoxidans A8]
 gi|310758745|gb|ADP14194.1| diguanylate cyclase, GGDEF domain protein 3 [Achromobacter
           xylosoxidans A8]
          Length = 533

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 77/143 (53%), Gaps = 12/143 (8%)

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
           L +  + ++IV  DID+FK IND  GH  GD+ +  L+  +     +   + R GGEEF 
Sbjct: 386 LQAEEQPVAIVAIDIDHFKHINDRHGHAAGDRALRELAQLMSEGSRSGDTLARAGGEEF- 444

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGP---SIHITISAGIAERC-HKEPISTII 237
              L  +  EAAI       ++E  ++ I++ P   +I +TISAG+A    H   +   +
Sbjct: 445 VMLLPGAPLEAAI------GLVERLRLRIAAEPGVIAIPLTISAGVAAYPEHGATLDAAL 498

Query: 238 YRADQALYVAKKSGRNRVVCFSD 260
            RADQALY AK  GRN  VC +D
Sbjct: 499 QRADQALYYAKNHGRN-AVCVAD 520


>gi|260770551|ref|ZP_05879484.1| response regulator [Vibrio furnissii CIP 102972]
 gi|260615889|gb|EEX41075.1| response regulator [Vibrio furnissii CIP 102972]
          Length = 321

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 96/191 (50%), Gaps = 24/191 (12%)

Query: 87  GSILKELFISYNRISQLSRI-------DCLSGLLNHS-------AFISSLGSYNEKLSIV 132
            ++ +EL  +  ++ +L+RI       D L+ + N           IS  G +   LS++
Sbjct: 128 ANMRRELKRTSAKLEELNRILQHQANEDGLTQVFNRRFMDEKLREMISWHGRHEMALSVI 187

Query: 133 FFDIDYFKQINDNFGHPVGDK---VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            FD+D+FK  NDN+GH  GD+    IA  +++L    G   FVGR GGEEF      +  
Sbjct: 188 LFDVDHFKPFNDNYGHIEGDRCLHTIAQAANKLFCRSGE--FVGRYGGEEFLILLTNTDV 245

Query: 190 QEAAILANDLRKIIENSQINIS-SGPSIHITISAG---IAERCHKEPISTIIYRADQALY 245
           + A   A  ++  IE+     + S  + HITIS G   I    H E ++ +  +AD ALY
Sbjct: 246 EGARAAAERIQDSIEHIHYPHAFSAVADHITISQGVVTITPDGH-ETLAQVYEQADNALY 304

Query: 246 VAKKSGRNRVV 256
            AK +GRNR V
Sbjct: 305 QAKSNGRNRYV 315


>gi|153212727|ref|ZP_01948384.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|124116377|gb|EAY35197.1| GGDEF family protein [Vibrio cholerae 1587]
          Length = 392

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 117/231 (50%), Gaps = 21/231 (9%)

Query: 34  FFSIFIATVIFIANI-FLFY--IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
            F++ +A +I +  + F+ Y  + L   +    I+V+NL   II  T+ +L       + 
Sbjct: 168 LFAVVLAVMIVMLYVPFVAYQTLPLMAVFRASTIVVQNLFFFIILGTMLMLF------LF 221

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNF 146
           +E  I ++R+  +   D L+G  N   F   +    ++      +   DID+FKQIND++
Sbjct: 222 EE--IEWHRLRSIQ--DELTGAFNRRHFKEQVQQKLKQSKQKSMVALVDIDHFKQINDSY 277

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH +GD VI ++   L  +  T   V R GGEEFA  A  +  +  +   + +R  I + 
Sbjct: 278 GHDIGDSVITYVVRHLESLALTECLVARYGGEEFAIFARENDFERVSQALDSVRDAI-SV 336

Query: 207 QINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             ++   P  + ++I A I E  H+     ++ +AD+ALY AK+ GRNR++
Sbjct: 337 GFHVEQQPLKVSVSIGAVIFESSHE--YGEVLRQADKALYQAKQQGRNRIM 385


>gi|294010897|ref|YP_003544357.1| putative signal transduction protein [Sphingobium japonicum UT26S]
 gi|292674227|dbj|BAI95745.1| putative signal transduction protein [Sphingobium japonicum UT26S]
          Length = 895

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 95/177 (53%), Gaps = 13/177 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNE--KLSIVFFDIDY 138
           SG+ L E+  S   +++L++ D L+GL N    + SL     G   +    +++  D+D 
Sbjct: 353 SGTDLTEMRRSQAEVTRLAQYDSLTGLANRVQMMRSLEQAVAGKKGQPRDCTLMMLDLDR 412

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND  GHP GD ++  +S+++  V G    VGR GG+EF     G  ++   +L + 
Sbjct: 413 FKIVNDTLGHPAGDALLRQVSERIQRVVGNKGLVGRQGGDEFKILLPGRPDK--IMLDHL 470

Query: 199 LRKIIEN-SQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGR 252
            R II + SQ  +  G ++ I +S GI+  C ++ ++   +I  AD ALY AK  GR
Sbjct: 471 ARAIITDVSQPYMVEGTAVVIGVSIGIS-FCPQDGVTADELIRNADLALYAAKGDGR 526


>gi|77458114|ref|YP_347619.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas fluorescens Pf0-1]
 gi|77382117|gb|ABA73630.1| putative sensory box GGDEF/EAL domain protein [Pseudomonas
           fluorescens Pf0-1]
          Length = 1092

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 63/196 (32%), Positives = 101/196 (51%), Gaps = 19/196 (9%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
           + ++ T  LLL     S+LK    +  +I  L+  D L+ L N +         I+ L  
Sbjct: 632 ITLNETACLLLTARDVSLLKN---AEAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKR 688

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-- 182
           +N + +++F D+D+FK IND+ GHPVGD V+  ++ +L         V RLGG+EF    
Sbjct: 689 HNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRMEDTVARLGGDEFVVLL 748

Query: 183 AALGSSEQEAAI----LANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTII 237
           + L  +  E +     LA+ +R+++  S+     G  + +T S G+A    H    + ++
Sbjct: 749 SGLEGTRNEVSAQVRELADTIRELL--SEPMFLDGQRLQVTPSIGVALIPDHGSTPTDLL 806

Query: 238 YRADQALYVAKKSGRN 253
            RAD ALY AK SGRN
Sbjct: 807 KRADIALYRAKDSGRN 822


>gi|298507295|gb|ADI86018.1| diguanylate cyclase, FeoA domain-containing [Geobacter
           sulfurreducens KN400]
          Length = 249

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 9/169 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHP 149
           Y  +   +  D L+G  N  A        +  Y EK    S++  DID+FK+IND +GH 
Sbjct: 81  YEAVKVQAHYDNLTGCFNRHALEGIVRGEVLKYAEKRVPFSLLLADIDHFKKINDTYGHQ 140

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+   +D L         + R GGEEF     G+  +EA+++A  LR++IE S   
Sbjct: 141 EGDRVLKRFADLLRHGLRRSDVLCRWGGEEFLILLRGTLVEEASLIAERLRRMIEESIFP 200

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV-VC 257
                 + +T+S G         ++ +   AD ALY +K++GRNRV VC
Sbjct: 201 PFPTEGL-VTVSMGGVGMPPGTDVNRLFAEADSALYTSKRAGRNRVTVC 248


>gi|264677814|ref|YP_003277720.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262208326|gb|ACY32424.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 397

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 124/245 (50%), Gaps = 22/245 (8%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           +++ S+ F+ +  T   I ++ L Y     F    Y L+  +S++  +I  +L++  I+ 
Sbjct: 153 LLWLSMIFTAYTLTRPMIISL-LGYPDPRSFPRSPYWLLTLVSILNFAILFTLVMTVIAT 211

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
              KE   +  ++ +   +D L+ +LN  +F       ++ +  Y   ++++  DID+FK
Sbjct: 212 ---KE---TVGKLQKERDLDTLTQILNRRSFHEYALKLLTDMRLY--PMAVLACDIDHFK 263

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GDKV+  +S  L         V R GGEEF    +  + ++A  +A  +R
Sbjct: 264 RINDTWGHEYGDKVLQLVSATLQNHVRERDLVARFGGEEFVILLIDIALRDAEEIAQRIR 323

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV----V 256
           + + +++  + SG    +T+S GI+       +   +  ADQ LY AK +GR++V    V
Sbjct: 324 QDLRSNKDLLLSG--TKLTMSFGISSITDPSQLDHALREADQLLYQAKNAGRDQVHVSGV 381

Query: 257 CFSDI 261
            + DI
Sbjct: 382 SYPDI 386


>gi|260549050|ref|ZP_05823271.1| ggdef domain/eal domain-containing protein [Acinetobacter sp.
           RUH2624]
 gi|260407778|gb|EEX01250.1| ggdef domain/eal domain-containing protein [Acinetobacter sp.
           RUH2624]
          Length = 684

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 95/177 (53%), Gaps = 12/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +   ++ LS  D L+ L N           +S     ++K++ ++ D+D FK +ND
Sbjct: 246 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSDHRYKDQKIAFLYIDLDRFKSVND 305

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH +GD+++  ++++L         + R+GG+EF   A  +  +EA  LA  + ++I+
Sbjct: 306 AFGHHIGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLIAENTDTEEAMQLAEKVLQLIQ 365

Query: 205 NS-QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +S QI   SG  I+I+ S GIA    H + +  ++  AD A+ ++K+ GRN    FS
Sbjct: 366 DSYQI---SGKEINISASLGIALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTVFS 419


>gi|167624095|ref|YP_001674389.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167354117|gb|ABZ76730.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 434

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 96/192 (50%), Gaps = 11/192 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129
           SL+  S+ + +    I G  L  ++I   R    S ID LSG      F+S   S +   
Sbjct: 252 SLLYNSLAVLICTLVIHGCFLTAVYIR--RFYVESSIDRLSGFYRKDGFMSKKMSVS--- 306

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-S 188
           SI   DID+FK+IND +GH VGD VI+ +++++     +     R GGEEF     G  S
Sbjct: 307 SICLIDIDHFKKINDVYGHIVGDIVISEVANRIKSSMRSTDLAIRWGGEEFVVIFNGELS 366

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
            ++ +  AN L  II N  IN      I +TIS G      +  +    + +D+ALY +K
Sbjct: 367 FEQFSNKANGLLSIINNETIN-----DIAVTISIGAIYSQSEMKLQEAFHLSDEALYESK 421

Query: 249 KSGRNRVVCFSD 260
            SGRN+V  + +
Sbjct: 422 NSGRNKVTIYRN 433


>gi|163802400|ref|ZP_02196294.1| Na(+)-translocating NADH-quinone reductase subunit F [Vibrio sp.
           AND4]
 gi|159173929|gb|EDP58743.1| Na(+)-translocating NADH-quinone reductase subunit F [Vibrio sp.
           AND4]
          Length = 404

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 5/155 (3%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +++  D L+ L N           +E+ +I   DID+FKQ+ND++GH  GD V+  +++ 
Sbjct: 253 RMANQDALTSLWNRRFLFGQTNGKSEERNIAMLDIDFFKQVNDSYGHYGGDAVLVMVANI 312

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L + F   + + RLGGEEF   A G  +     L   +R+ +E + + +    SI +TIS
Sbjct: 313 LKIYFPDDI-IARLGGEEFCIQAYGDYDDFVNRLEQ-MRQRVEKTPV-LYQESSIQVTIS 369

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G +    K  +   I  AD  LY AKK+GRN+ +
Sbjct: 370 IGASNV--KGALDQQIKVADDRLYQAKKNGRNQTI 402


>gi|330959980|gb|EGH60240.1| response regulator, putative/diguanylate cyclase [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 547

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 16/160 (10%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +  L          N+ L     DID+FK++ND+ GHP+GD+VI  L+
Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRRENKPLCFAMLDIDHFKKVNDSHGHPMGDRVIKSLA 438

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218
             L        F+GR GGEEFA     +    A  + +++R     ++I+  + P  +  
Sbjct: 439 LFLKQRLRKADFIGRYGGEEFAVVMPDTDIHSAHKVLDEIRHRF--AEIHYPAQPVDLFC 496

Query: 219 TISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRV 255
           T SAG+   C   H + +S +  +AD ALY AK +GRN+V
Sbjct: 497 TFSAGVV--CLGPHDDSLS-LASQADIALYRAKHAGRNQV 533


>gi|330718374|ref|ZP_08312974.1| Signal transduction diguanylate cyclase [Leuconostoc fallax KCTC
           3537]
          Length = 167

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 83/163 (50%), Gaps = 10/163 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA-- 156
           Q S  D L+GL N+      L  Y   N+ L I  FD+DYFKQIND FGH  G++++   
Sbjct: 3   QNSYHDNLTGLFNYRKLEKDLSWYSQDNDNLGIAIFDLDYFKQINDEFGHLNGNQLLQHF 62

Query: 157 --FLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
             FLS+ L    G  P+ + R GGEEF      S   + A+    L++ ++    +   G
Sbjct: 63  SEFLSEYLQYKNGNEPLNLYRYGGEEFVWIFDASHIGDLALFFESLQRQLKTMPWDEIDG 122

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  I+ S G+    H   +S+++  AD+ LY AK +GR +  
Sbjct: 123 RT--ISFSGGVGLLRHHHDLSSVLRSADELLYQAKANGRAQTT 163


>gi|330821348|ref|YP_004350210.1| GGDEF domain protein [Burkholderia gladioli BSR3]
 gi|327373343|gb|AEA64698.1| GGDEF domain protein [Burkholderia gladioli BSR3]
          Length = 509

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 85/176 (48%), Gaps = 10/176 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+    +  ++ +L R D L+GL N  +F ++L             LS++F DID FK  
Sbjct: 325 LRRRQRAEEQLRRLVRTDALTGLGNRRSFDTTLHVEWLRTQRTGRPLSLLFVDIDQFKAY 384

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND++GHP GD+V+  +   L      P   V R GGEEF      +  + AA     +R+
Sbjct: 385 NDHYGHPAGDEVLREVGRVLTRCAQRPSDDVARYGGEEFVVTLPDTDARGAAQFGERVRR 444

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRV 255
            I +  I  ++     +T+S GI         S + +   AD ALY AK +GRNR+
Sbjct: 445 SIYDLAIPHAASHYGRVTVSIGIVTSGEAAASSDVAFVNLADTALYHAKTAGRNRI 500


>gi|296447498|ref|ZP_06889421.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylosinus trichosporium OB3b]
 gi|296254965|gb|EFH02069.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylosinus trichosporium OB3b]
          Length = 825

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 21/168 (12%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHPV 150
           RI+ L+  D L+GL N + F   L    E+L         +++ D+D FK +ND +GHPV
Sbjct: 391 RIAHLAHHDPLTGLANRTLFRLRLSEGLERLDETSAPGIGVLYLDLDGFKDVNDAYGHPV 450

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA----NDLRKI--IE 204
           GD+++  ++++L  +      V R+GG+EFA    G+   EA  LA      L +   I+
Sbjct: 451 GDRLLVAVAERLRRLLPQGDLVARVGGDEFALVQCGADRDEAERLACVVVEALSRTYEID 510

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             Q+NI  G S+ ++++   ++        T++  AD ALY AK  GR
Sbjct: 511 GHQVNI--GASVGVSVAPNDSDDA-----DTLLKNADIALYRAKADGR 551


>gi|332991743|gb|AEF01798.1| diguanylate cyclase [Alteromonas sp. SN2]
          Length = 547

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 12/147 (8%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L +   DID FKQ+ND FGH +GD+V+   S +L  VF    ++ R GGEEF A A    
Sbjct: 377 LLVFILDIDDFKQVNDRFGHQIGDEVLIEFSKRLEHVFRQSDYIVRWGGEEFVAVARFVD 436

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAG------IAER---CHKEPISTIIYR 239
            + A +LA  L K I +++  +    ++ IT S G      I  +   CH E    +I  
Sbjct: 437 RKSAMVLAQRLVKAINDTKFEMHDNTALPITCSVGYVCYPLIPTKVISCHLEK---LIEM 493

Query: 240 ADQALYVAKKSGRNRVVCFSDIENNTC 266
           +D  LY+AK SG+N  V    + +   
Sbjct: 494 SDACLYLAKASGKNTWVGLESVHDEEA 520


>gi|326794533|ref|YP_004312353.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326545297|gb|ADZ90517.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 454

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 74/129 (57%), Gaps = 6/129 (4%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  DID FK+IND FGH VGD V+ F +  L+        + R+GGEEFA        
Sbjct: 328 SLIMLDIDCFKKINDQFGHQVGDAVLQFFASSLLQCLRKSDLLFRMGGEEFAVLLPQQPL 387

Query: 190 QEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAK 248
           ++A  +A    +I+E+  I ++    I   T+SAG++     +  ++I+ RAD+ALY +K
Sbjct: 388 EKATQVAE---RILES--IEMTDDDRIPPFTVSAGVSTYRSGDDDNSILTRADKALYQSK 442

Query: 249 KSGRNRVVC 257
            +GRNRV  
Sbjct: 443 LNGRNRVTS 451


>gi|254295303|ref|YP_003061326.1| diguanylate cyclase [Hirschia baltica ATCC 49814]
 gi|254043834|gb|ACT60629.1| diguanylate cyclase [Hirschia baltica ATCC 49814]
          Length = 240

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 90/191 (47%), Gaps = 24/191 (12%)

Query: 74  ISITISLLLGYIS--GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------- 124
           +   I+ + G IS   +  K L  S      ++  D L  L N  AF+  L         
Sbjct: 46  VRAAIAAMTGEISELRTKNKSLLKSLENAESMADHDALVPLFNRRAFVRELSRLIAFARR 105

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-- 182
           Y    S+++FD+D FK IND  GH  GDK++  +++ L+        +GRLGG+EF A  
Sbjct: 106 YGLDASVIYFDLDGFKSINDTHGHAAGDKILLAVAEVLIQQTRESDLLGRLGGDEFIAVL 165

Query: 183 --AALGSSEQEAAILANDLRKIIENSQINIS---SGPSIHITISAGIAERCHKEPISTII 237
                 S+ ++AA LA+++R        NIS    G  + I  S G+    H E     I
Sbjct: 166 TSVKPSSAREKAAQLADEIR--------NISIQHEGKLLSIDASFGVTTLEHDETAEIQI 217

Query: 238 YRADQALYVAK 248
            R+D+A+Y AK
Sbjct: 218 ARSDEAMYAAK 228


>gi|123440926|ref|YP_001004917.1| HmsT protein [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122087887|emb|CAL10675.1| HmsT protein [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 366

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 23/248 (9%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILV---ENLSLVIISITISLLLGY------ 84
            F+IF  + I +++ FL +   T    L  I +   +N+  +I +I + L+ G+      
Sbjct: 112 LFTIFFISTIALSDNFLAFCLHTAPAALTVIFLDDFQNIFRIIFTIMLPLI-GFSLHHLM 170

Query: 85  ------ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFF 134
                  +  ++  L+    + S LS ID L+ L N     + L +   +      ++  
Sbjct: 171 LRRSDDFTRKLVARLYNEREKFSDLSMIDPLTSLYNRRGLENKLETLLAQSPGNHYVLLL 230

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK  NDN+GH +GD+ +  ++  +     +   V R GGEEF       SE+ A+ 
Sbjct: 231 DIDHFKAYNDNYGHTMGDQALVRVAAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYASQ 290

Query: 195 LANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           LA  +R+ +    I    +   S  +T+SAGI+       +++ +  AD+ALY AKK GR
Sbjct: 291 LAERVRQRVLGLDIPHVFNHKVSTTVTLSAGISP-LQPYDLASSLKAADEALYRAKKDGR 349

Query: 253 NRVVCFSD 260
           N+V    D
Sbjct: 350 NKVAFAED 357


>gi|91223827|ref|ZP_01259091.1| hypothetical protein V12G01_18822 [Vibrio alginolyticus 12G01]
 gi|91191319|gb|EAS77584.1| hypothetical protein V12G01_18822 [Vibrio alginolyticus 12G01]
          Length = 506

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D ++GLLN       LG +   N   S++  DID+FK +NDN+GH VGD ++   +  + 
Sbjct: 351 DSMTGLLNRRGLDKVLGLFKQENTAFSVLALDIDHFKSVNDNYGHDVGDNLLREFAQLMK 410

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
               +   + R GGEEF      +    A  +A  +R  +E     +       +T+S G
Sbjct: 411 DQARSNDHLCRSGGEEFMMFLEKTDVNHAMDVAERIRHNVEQHDFQVVG----KVTVSLG 466

Query: 224 IAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           ++  + +  PI  ++  AD ALY AK +GRNR     D +
Sbjct: 467 VSHWKGNDTPIEAVMKDADNALYKAKHNGRNRTELGDDAQ 506


>gi|90581541|ref|ZP_01237334.1| putative c-di-GMP phosphodiesterase A-related protein [Vibrio
           angustum S14]
 gi|90437303|gb|EAS62501.1| putative c-di-GMP phosphodiesterase A-related protein [Vibrio
           angustum S14]
          Length = 690

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 84/172 (48%), Gaps = 17/172 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +I QL ++D L+GLLN   F   L         + +++ DID FK IND+ GH +GDKV+
Sbjct: 263 QIEQLVQMDPLTGLLNRHGFTRQLDQLMKAETPVVMLYIDIDNFKNINDSLGHHIGDKVL 322

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP- 214
             ++ +L  +      +G L G+EF A  L + E E         +II    I + + P 
Sbjct: 323 QEIAQRLRRLLPETAILGYLSGDEF-AILLPNPEHERT------GEIISEQIIALVNQPF 375

Query: 215 -----SIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                  H+  S G +    H      ++  AD A+Y AK  GRNR+V F+D
Sbjct: 376 ELRHFRKHLACSIGMVTSPGHGNDARMMLQNADTAMYEAKHRGRNRLVEFND 427


>gi|254225339|ref|ZP_04918951.1| GGDEF family protein [Vibrio cholerae V51]
 gi|254286176|ref|ZP_04961136.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|297578957|ref|ZP_06940885.1| GGDEF family protein [Vibrio cholerae RC385]
 gi|125622180|gb|EAZ50502.1| GGDEF family protein [Vibrio cholerae V51]
 gi|150423845|gb|EDN15786.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|297536551|gb|EFH75384.1| GGDEF family protein [Vibrio cholerae RC385]
          Length = 392

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 18/225 (8%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF----IS 96
            V+    I + Y+    +  L  + V   S +++    +L    I G++L  LF    I 
Sbjct: 170 AVVLAVMIVMLYVPFVAYQTLPLLAVFRASTIVVQ---NLFFFIILGTMLM-LFLFEEIE 225

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGD 152
           ++R+  +   D L+G  N   F   +    ++      +   DID+FKQIND++GH +GD
Sbjct: 226 WHRLRSIQ--DELTGAFNRRHFKEQVQQKLKQSKQKSMVALVDIDHFKQINDSYGHDIGD 283

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            VI ++   L  +  T   V R GGEEFA  A  +  +  +   + +R  I +   ++  
Sbjct: 284 SVITYVVRHLESLALTECLVARYGGEEFAIFARENDFERVSQALDSVRDAI-SVGFHVEQ 342

Query: 213 GP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            P  + ++I A I E  H+     ++ +AD+ALY AK+ GRNR++
Sbjct: 343 QPLKVSVSIGAVIFESSHE--YGEVLRQADKALYQAKQQGRNRIM 385


>gi|229505047|ref|ZP_04394557.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229511283|ref|ZP_04400762.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229518401|ref|ZP_04407845.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229608051|ref|YP_002878699.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|229345116|gb|EEO10090.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229351248|gb|EEO16189.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229357270|gb|EEO22187.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229370706|gb|ACQ61129.1| GGDEF family protein [Vibrio cholerae MJ-1236]
          Length = 358

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 102/198 (51%), Gaps = 18/198 (9%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           I+V+NL   II  T+ +L       + +E  I ++R+  +   D L+G  N   F   + 
Sbjct: 167 IVVQNLFFFIILGTMLMLF------LFEE--IEWHRLRSIQ--DELTGAFNRRHFKEQVQ 216

Query: 124 SYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
              ++      +   DID+FKQIND++GH +GD VI ++   L  +  T   V R GGEE
Sbjct: 217 QKLKQSKQKSMVALVDIDHFKQINDSYGHDIGDSVITYVVRHLESLALTECLVARYGGEE 276

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIY 238
           FA  A  +  +  +   + +R  I +   ++   P  + ++I A I E  H+     ++ 
Sbjct: 277 FAIFARENDFERVSQALDSVRDAI-SVGFHVEQQPLKVSVSIGAVIFESSHE--YGEVLR 333

Query: 239 RADQALYVAKKSGRNRVV 256
           +AD+ALY AK+ GRNR++
Sbjct: 334 QADKALYQAKQQGRNRIM 351


>gi|71736110|ref|YP_274174.1| sensory box protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71556663|gb|AAZ35874.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 729

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 107/214 (50%), Gaps = 29/214 (13%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN---- 114
           +G   +L  ++  + ++ T  LL+   +   + +L  +  ++  L+  D L+GL N    
Sbjct: 245 HGAPLVLDISVEFITLNNTACLLM---NARDIGQLKTAQAQVQHLAYHDPLTGLPNCALL 301

Query: 115 ---HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
               S  +S L   N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         
Sbjct: 302 MDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 361

Query: 172 VGRLGGEEFAAAALG----SSE--QEAAILANDLRKIIENSQI----NISSGPSIHITI- 220
           V RLGG+EF     G      E  Q+  +LA++LR+++          +   PSI I + 
Sbjct: 362 VARLGGDEFVVLICGLDGTRDEVIQQVRVLADNLRELLAEPMFLDGHRLQVTPSIGIVLI 421

Query: 221 -SAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
              G+A        + ++ RAD ALY AK SGRN
Sbjct: 422 PDDGLAP-------ADLLKRADIALYRAKDSGRN 448


>gi|283851062|ref|ZP_06368346.1| diguanylate cyclase with GAF sensor [Desulfovibrio sp. FW1012B]
 gi|283573458|gb|EFC21434.1| diguanylate cyclase with GAF sensor [Desulfovibrio sp. FW1012B]
          Length = 499

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 81/158 (51%), Gaps = 10/158 (6%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ + N  AF   L         Y+  +S++  DID+FK IND +GH VGD V+  + 
Sbjct: 322 DGLTRIHNRRAFDERLVEELRRHQRYHHPMSLLMLDIDHFKGINDTYGHLVGDHVLREVG 381

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +     +  F  R GGEEF      ++E+++ +LA  LR +I +++  +  G    IT
Sbjct: 382 RLMTETLRSTDFTARYGGEEFVIILPQTAEEQSRVLAERLRGLIADARF-VHDGHPFSIT 440

Query: 220 ISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255
           +S G A            ++ +AD+ALY AK  GRN+V
Sbjct: 441 VSIGAATLLPGALSKRKDLLDKADKALYQAKTLGRNQV 478


>gi|258627542|ref|ZP_05722319.1| GGDEF family protein [Vibrio mimicus VM603]
 gi|258580124|gb|EEW05096.1| GGDEF family protein [Vibrio mimicus VM603]
          Length = 525

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 108/196 (55%), Gaps = 24/196 (12%)

Query: 76  ITISLLLGYISGSILKE-------LFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSY 125
           + ISLLLGYI+  +L+E       L      +  L+  D L+G+ N  +F   +S++ + 
Sbjct: 314 VIISLLLGYITRLLLEEKTRLEEMLDERTAELRYLAEHDSLTGIYNRRSFNNLLSNMLNS 373

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
            +  ++V FDID FKQIND+ GH VGD     V+  ++ +L+       FV R+GG+EFA
Sbjct: 374 GQPFTLVSFDIDCFKQINDSHGHLVGDGALVHVVNLVTQKLL---PNDHFV-RMGGDEFA 429

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYR 239
             +  +  +  +     +R  +E + + I+ G S+ +T+S G  I+E  ++   S +++ 
Sbjct: 430 ILSNVAGRETLSNYLESIRATVERNPLAINQG-SVALTVSIGACISEGLNE---SELLHS 485

Query: 240 ADQALYVAKKSGRNRV 255
            D  LY++K  GRNRV
Sbjct: 486 VDAQLYLSKTLGRNRV 501


>gi|237805276|ref|ZP_04591980.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331026384|gb|EGI06439.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 226

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 18/178 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL  + + +  +++ D L+ L N   F +SL          N  L+I+  DID+FKQ ND
Sbjct: 38  ELNNTRHELEIIAQTDSLTNLANRRCFDASLQKEWGRASRNNSVLAIILLDIDWFKQYND 97

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDL 199
            +GH  GD  +     Q+  + G+ +        R GGEEF      +    A  +A  +
Sbjct: 98  RYGHLKGDDCLM----QVAEILGSCINRSGDLAARYGGEEFVILLAETDLAGALSVAEKV 153

Query: 200 RKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           R  IEN+ I  S+ P  ++TIS+G+       KE     +  AD+ LY AK  GRNRV
Sbjct: 154 RSAIENAFIEHSASPVGNLTISSGVVAISAPEKEDHKAALEEADRLLYSAKTKGRNRV 211


>gi|188535880|ref|YP_001905940.1| hypothetical protein ETA_pET460260 [Erwinia tasmaniensis Et1/99]
 gi|188027184|emb|CAO95016.1| Conserved hypothetical protein [Erwinia tasmaniensis Et1/99]
          Length = 489

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 7/153 (4%)

Query: 107 DCLSGLLNHSAFISSLGSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+ L N   F      Y E    S+++ DIDYFK+IND +GH  GD V+  ++  L  
Sbjct: 338 DPLTNLYNRRGFYFHSKYYQEINLHSVLYLDIDYFKKINDTYGHNTGDAVLCTIAIVLKK 397

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
            F     + R GGEEFA     +S + A  +A    K+I  ++          +T+SAG+
Sbjct: 398 NFRKEDILSRFGGEEFAFLLPRTSAKNAVNMAKKTLKMISTTEF----PHREKVTVSAGV 453

Query: 225 AERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           +    K + +   + +AD+ALY++KK+GRN V 
Sbjct: 454 SIVSEKTKGLEKALIKADKALYLSKKNGRNLVT 486


>gi|189424842|ref|YP_001952019.1| diguanylate cyclase [Geobacter lovleyi SZ]
 gi|189421101|gb|ACD95499.1| diguanylate cyclase [Geobacter lovleyi SZ]
          Length = 253

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 8/179 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           +++ +   +  +  ++  D L+G LN  A        I         L+++  DID+FK+
Sbjct: 74  VVRPIKSHFETLRDMANYDQLTGCLNRHAANMILRHEIRRYADQELPLAVLMADIDHFKK 133

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND FGH  GD+++   +            + R GGEEF     G+ E+EA  +A+ +R+
Sbjct: 134 VNDTFGHTAGDQILKKFAQVAGSALRRCDMLCRWGGEEFLVLLRGTVEEEAFQIADRIRR 193

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +E+          + +T+S G A          ++  AD+ALY AK +GRNRV   SD
Sbjct: 194 RVESITFPPYDACGL-LTVSIGSAALLPGGNFEQLVAEADKALYRAKHAGRNRVATISD 251


>gi|312883413|ref|ZP_07743139.1| GGDEF family protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369029|gb|EFP96555.1| GGDEF family protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 411

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 21/169 (12%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+ +    A  S L    +  SI   DID+FK  ND++GH  GD V+  ++ +L  V 
Sbjct: 241 DNLTDIPGRLALESDLRHLGKVFSIAMVDIDHFKSFNDSYGHETGDDVLKLVASKLQKV- 299

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP--------- 214
           G    V R GGEEF     G    +      +LR  +E   +   N  + P         
Sbjct: 300 GKKARVYRYGGEEFTILFKGREAPDTLSELEELRAALEEYDMVIRNKDARPKNDKVGSKQ 359

Query: 215 --------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                   +++ITIS G+A+    + ++ ++  AD ALY AKK+GRN+V
Sbjct: 360 RKAKAKSNTVNITISIGVADNLDFDTVAEVMKAADNALYKAKKTGRNKV 408


>gi|288924112|ref|ZP_06418162.1| diguanylate cyclase [Frankia sp. EUN1f]
 gi|288344545|gb|EFC79024.1| diguanylate cyclase [Frankia sp. EUN1f]
          Length = 484

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 100/207 (48%), Gaps = 18/207 (8%)

Query: 66  VENLSLVIISITISLLLGYISGSILK-------ELFISYNRISQLSRIDCLSGLLN--HS 116
           +E + L+   + +SL    + GS+ +       EL I+  R+ QLS  D L+GL N  H 
Sbjct: 259 LEGIMLIAGQLAVSLDNARVYGSLERRVAERTEELAIANRRLEQLSVTDPLTGLANRRHL 318

Query: 117 AFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
             I  L  +  +     L++   DID+FK  ND+FGH  GD+ +  ++  L         
Sbjct: 319 GEILDLEWHRAQRQTTPLALAMIDIDHFKSYNDHFGHAAGDQCLQRVAACLAASTRDTDL 378

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIAE--RC 228
             R GGEEFA    G+    A+ +A+ LR  + E ++ +  +   I +T+S G+      
Sbjct: 379 TARYGGEEFAVVMPGADTGVASRIAHRLRSAVAELTEPHPLTTKRI-VTVSIGVVSIVPT 437

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRV 255
             E    ++  AD ALY AK  GRN+V
Sbjct: 438 STEETEALVELADSALYRAKSGGRNQV 464


>gi|295700166|ref|YP_003608059.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
 gi|295439379|gb|ADG18548.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
          Length = 531

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 92/196 (46%), Gaps = 24/196 (12%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEK 128
           + +S LL +     L++   +   + +L+  D L+GL N       L          N  
Sbjct: 323 VVVSWLLAFA----LRDKQRAQAALLRLASTDPLTGLSNRRVLDKRLDDEWMRARRDNRP 378

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187
           LS++F DID+FK+ ND +GH  GD+V+  ++D +  V    +  V R GGEEFA     +
Sbjct: 379 LSVLFIDIDHFKRFNDTYGHESGDEVLVAVADCIASVARRSVDLVARYGGEEFAVVLPDT 438

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST--------IIYR 239
           + Q A  +A  +R+ +E+  I         +T+S G    C     ST        ++  
Sbjct: 439 TAQGAFAVAEQIRRKVESRVIVRGHEAPQAVTVSVG----CATARPSTADFANGLELLAA 494

Query: 240 ADQALYVAKKSGRNRV 255
           AD  LYVAK  GRNR 
Sbjct: 495 ADAQLYVAKNEGRNRT 510


>gi|268680795|ref|YP_003305226.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618826|gb|ACZ13191.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 477

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 91/173 (52%), Gaps = 16/173 (9%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFG 147
           I   ++ QL+  D L+ L N   F      +++        L+++  D+D FK++ND FG
Sbjct: 308 IYQKQLVQLASEDALTKLYNRREFNEQFERFSKMHHKGQTSLALMLIDVDDFKEVNDTFG 367

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG----SSEQEAAILANDLRKII 203
           H VGD+V+  L+  L     +   V R GGEEFA   +G    ++E+ A IL     +I 
Sbjct: 368 HLVGDEVLVRLAQLLKENVRSSDIVARWGGEEFAILLVGVCIETTEEIAQILC---ERIK 424

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            ++ +    G ++ ++I  G+    H E    ++++ D ALY AKK+G+++VV
Sbjct: 425 HDAVLQGILGRALSVSIGVGMFN--HLESQDGLVHKVDNALYAAKKAGKDQVV 475


>gi|15641384|ref|NP_231016.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121588016|ref|ZP_01677768.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121728539|ref|ZP_01681562.1| GGDEF family protein [Vibrio cholerae V52]
 gi|147673521|ref|YP_001216931.1| GGDEF family protein [Vibrio cholerae O395]
 gi|153819350|ref|ZP_01972017.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|153821345|ref|ZP_01974012.1| GGDEF family protein [Vibrio cholerae B33]
 gi|227081543|ref|YP_002810094.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|254848494|ref|ZP_05237844.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|298498544|ref|ZP_07008351.1| GGDEF family protein [Vibrio cholerae MAK 757]
 gi|9655867|gb|AAF94530.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121547757|gb|EAX57848.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121629203|gb|EAX61643.1| GGDEF family protein [Vibrio cholerae V52]
 gi|126510095|gb|EAZ72689.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|126521163|gb|EAZ78386.1| GGDEF family protein [Vibrio cholerae B33]
 gi|146315404|gb|ABQ19943.1| GGDEF family protein [Vibrio cholerae O395]
 gi|227009431|gb|ACP05643.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|227013289|gb|ACP09499.1| GGDEF family protein [Vibrio cholerae O395]
 gi|254844199|gb|EET22613.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|297542877|gb|EFH78927.1| GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 392

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 102/198 (51%), Gaps = 18/198 (9%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           I+V+NL   II  T+ +L       + +E  I ++R+  +   D L+G  N   F   + 
Sbjct: 201 IVVQNLFFFIILGTMLMLF------LFEE--IEWHRLRSIQ--DELTGAFNRRHFKEQVQ 250

Query: 124 SYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
              ++      +   DID+FKQIND++GH +GD VI ++   L  +  T   V R GGEE
Sbjct: 251 QKLKQSKQKSMVALVDIDHFKQINDSYGHDIGDSVITYVVRHLESLALTECLVARYGGEE 310

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIY 238
           FA  A  +  +  +   + +R  I +   ++   P  + ++I A I E  H+     ++ 
Sbjct: 311 FAIFARENDFERVSQALDSVRDAI-SVGFHVEQQPLKVSVSIGAVIFESSHE--YGEVLR 367

Query: 239 RADQALYVAKKSGRNRVV 256
           +AD+ALY AK+ GRNR++
Sbjct: 368 QADKALYQAKQQGRNRIM 385


>gi|329903745|ref|ZP_08273606.1| hypothetical protein IMCC9480_1608 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548225|gb|EGF32925.1| hypothetical protein IMCC9480_1608 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 527

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 82/169 (48%), Gaps = 16/169 (9%)

Query: 100 ISQLSRIDCLSGLLNHSA----FISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152
           +S+L R D L+G LN       F   L   + + S   I   D+D FK++ND  GH  GD
Sbjct: 362 MSELVREDQLTGSLNRRGLDDVFDRELARADRRKSPLCIAMLDLDDFKRLNDTHGHVAGD 421

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQI 208
           + + +L   +     T   + R GGEEF        +  + Q    L  +L K     +I
Sbjct: 422 EALVYLVRVIKDTLRTMDVLARFGGEEFLILLPDTTMDDATQTVTRLQRELTK-----RI 476

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + +   I IT SAG+A R   E    ++ RAD ALY AK++G+NRVV 
Sbjct: 477 FMHNNERILITFSAGVALRKGNEDQVGMLKRADTALYQAKRAGKNRVVS 525


>gi|304396063|ref|ZP_07377945.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pantoea sp. aB]
 gi|304356432|gb|EFM20797.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pantoea sp. aB]
          Length = 661

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 95/185 (51%), Gaps = 18/185 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + +++  +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRVLANTDTVTGLPNRNAIHQQISLALERAGHDETGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA---- 196
           ++ND +GH  GD+++  +S  ++   G    +GRLGG+EF   A  +S  +AA+ A    
Sbjct: 279 KVNDAYGHMFGDQLLQAVSLAILSCLGKDQTLGRLGGDEFVVLAEHTS--QAALEAMSSR 336

Query: 197 --NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
               LR+      I + SG SI I  +       H E   ++I  AD A+Y AK++GR +
Sbjct: 337 ILERLRQPFRIGLIEVYSGCSIGIAFAP-----LHGEDRESLIRNADTAMYHAKENGRGK 391

Query: 255 VVCFS 259
              F+
Sbjct: 392 FCVFA 396


>gi|302877452|ref|YP_003846016.1| diguanylate cyclase [Gallionella capsiferriformans ES-2]
 gi|302580241|gb|ADL54252.1| diguanylate cyclase [Gallionella capsiferriformans ES-2]
          Length = 346

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 85/180 (47%), Gaps = 31/180 (17%)

Query: 104 SRIDCLSGLLNHSAFISSL-----------------GSYNEKLS-------IVFFDIDYF 139
           S  D L+GLLN   F ++L                  S++ K         +   DID+F
Sbjct: 151 SETDTLTGLLNRRTFDNNLEKMLTECTDAEVQKIEINSHSRKPPSSELPHWLAVMDIDHF 210

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND FGH  GD+V+  LS  +   F     + R GGEEF      + E +A+ +    
Sbjct: 211 KRINDEFGHLYGDEVLLLLSRCMRRNFRQTDKLFRFGGEEFVVVLDRTCEVDASKVLERF 270

Query: 200 RKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           R  IE         P +  +TIS G      K+  ST++ RADQALY AK+ GRN+ VCF
Sbjct: 271 RTAIECYDF-----PQVGRVTISIGFTCLNGKDDPSTLVGRADQALYYAKEHGRNQ-VCF 324


>gi|294664742|ref|ZP_06730071.1| GGDEF family protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292605496|gb|EFF48818.1| GGDEF family protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 930

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 10/156 (6%)

Query: 107 DCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN +  +++L        +N + L++V  D+D+FK +ND  GH  GD V+A + 
Sbjct: 765 DELTGLLNRAGILAALREMLLHAEHNGRPLAVVLIDLDHFKLVNDQHGHLAGDAVLAGVG 824

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            ++  +      +GR GGEE  A   G +      L    R I  +  I+   G  +H+T
Sbjct: 825 RRMDTLMRGDDRIGRYGGEELLALLPGLNLDATHRLDALHRGICGDYPID---GGWLHVT 881

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+A     E +  ++ RAD ALY AK+SGRNRV
Sbjct: 882 CSVGVAWFQRGETLEQLLARADAALYRAKRSGRNRV 917


>gi|326318921|ref|YP_004236593.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375757|gb|ADX48026.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 396

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 101/217 (46%), Gaps = 31/217 (14%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ 118
           L  N++LV+   T++LL+ + +         + +++  L++ D L+G+LN   F      
Sbjct: 190 LAANVTLVLG--TVALLVAWRT--------EAEDKLRALAKTDALTGVLNRRGFDVRGRA 239

Query: 119 -ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
            ++    +  +++ V  D+D+FK++ND  GH  GD V+AF +  L     T    GR+GG
Sbjct: 240 LLAHALRHGLRVTAVMLDVDHFKRVNDTHGHGTGDHVLAFFARLLQDATRTGDVAGRIGG 299

Query: 178 EEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---- 232
           EEFA   A    ++ A      LR  +          P   +  SAG A      P    
Sbjct: 300 EEFAVLLAHAPGDRAAESFDRRLRARLAADSPQALGFP---VGYSAGAATLDAAPPDPGT 356

Query: 233 ------ISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                 ++ ++ RAD ALY AK++GR R+   S  + 
Sbjct: 357 VAVAPLLADLMARADAALYEAKRAGRGRMQVQSPAQG 393


>gi|114707083|ref|ZP_01439982.1| hypothetical protein FP2506_03489 [Fulvimarina pelagi HTCC2506]
 gi|114537633|gb|EAU40758.1| hypothetical protein FP2506_03489 [Fulvimarina pelagi HTCC2506]
          Length = 615

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 16/183 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           +E+    N +  LSR D L+GL N  A    L  +        +  +++  D+DYFK  N
Sbjct: 173 REVERRGNDLLALSRTDPLTGLYNRRATDEKLEGFWQDWLQNGQSFAVLLIDVDYFKAFN 232

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LANDLR 200
           D++GH  GD+ +  L++    +      F GR GGEEF    L  +E   AI  LA  +R
Sbjct: 233 DHYGHQDGDQCLVTLAEVFRGIAESNSCFAGRYGGEEF--IFLMGAEDPGAIVRLAESIR 290

Query: 201 KIIENSQINISSGP----SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +    +     P    S+ ++I + ++     + +  ++  ADQALY AK  GRNR+ 
Sbjct: 291 TAVLQLGLLHEKRPDGRKSVTVSIGSAMSHTSQGDAMDILVLAADQALYRAKDKGRNRIE 350

Query: 257 CFS 259
            F 
Sbjct: 351 IFD 353


>gi|15643940|ref|NP_228989.1| pleD-related protein [Thermotoga maritima MSB8]
 gi|4981734|gb|AAD36259.1|AE001775_2 pleD-related protein [Thermotoga maritima MSB8]
          Length = 643

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 86/170 (50%), Gaps = 15/170 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
            RI  L+  D L+G+ N  AF + L         YN KLS VF D+D FK+IND+ GH V
Sbjct: 477 ERILWLAERDSLTGVYNREAFENRLAYLINLSKRYNRKLSFVFIDLDDFKRINDSKGHLV 536

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQIN 209
           GD+V+    ++L  +      VGRLGG+EF      +    A IL   +++I E+  +  
Sbjct: 537 GDRVLKEFVNRLTSLLRKSDVVGRLGGDEFGIVLPETDRTGAEIL---MKRIEEHFREPV 593

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYV---AKKSGRNRV 255
           +  G    +  S GI+      E +  ++  AD+ +Y+   +KK GR  V
Sbjct: 594 LVDGELFSVNFSYGISVFPEDGESVKELLKVADERMYMNKFSKKRGRENV 643


>gi|325928323|ref|ZP_08189522.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
 gi|325541311|gb|EGD12854.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
          Length = 317

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 83/180 (46%), Gaps = 19/180 (10%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF-----------ISSLGSYNEKLSIVFFDIDYFKQI 142
           F +Y  +   ++ D L+GL N   F             S       L IV  DID+FK++
Sbjct: 126 FQNYRSLLDDAQRDALTGLRNRKTFDDVILRLFAGGADSAAEQGVWLGIV--DIDHFKRV 183

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH  GD+V+  ++  +   F     + R GGEEF     G     A  L    R  
Sbjct: 184 NDTFGHLYGDEVLLLVAQLMQRAFRQDDLLFRFGGEEFVIVLRGVDRDTAVSLFERFRLA 243

Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +          P +  +T+S GI E  H   IS ++  AD+ALY AK++GRNR   ++++
Sbjct: 244 VAEHLF-----PQVGQVTLSTGIVELTHGRLISEMLDEADKALYWAKQNGRNRAAVYAEL 298


>gi|325262491|ref|ZP_08129228.1| sensory box/GGDEF domain/EAL domain protein [Clostridium sp. D5]
 gi|324032323|gb|EGB93601.1| sensory box/GGDEF domain/EAL domain protein [Clostridium sp. D5]
          Length = 410

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 120/246 (48%), Gaps = 29/246 (11%)

Query: 24  PHTFMIYFSIFFSI-FIATVIFIANIFLFYIGLTPFYGLEYILVEN-LSLVIISITISLL 81
           P  F++ F   F++ F+  VI+++++      L         + EN +   +++   S+ 
Sbjct: 163 PALFILRFRQMFTVMFLVEVIYVSSVMQVKNKL---------MAENDIFNSVVAFIFSMT 213

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-----IVFFDI 136
           + ++   +  E   + +R  +LS +D L+G+ N  A  +++  Y EK S     ++F D+
Sbjct: 214 VAHVILKLRAEDHNTRSRYKRLSMLDSLTGIPNKKACENAIAHYLEKNSPSYSALLFLDL 273

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-- 194
           D FK+IND+ GH  GD+++      L   F     +GR+GG+EF        + E A+  
Sbjct: 274 DDFKKINDSIGHSAGDRLLEETGKLLFKSFRASDLIGRVGGDEFMILITDYHDTEDALKR 333

Query: 195 ----LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
               L   L++I++N  I  S   SI   ++AG +   H     T    AD+ LY AK S
Sbjct: 334 KCTALQRALQQIMQNYGIQTSC--SIGAILAAGQSLNFH-----TAYALADKCLYEAKAS 386

Query: 251 GRNRVV 256
           G+N+ V
Sbjct: 387 GKNKCV 392


>gi|313673992|ref|YP_004052103.1| response regulator receiver modulated diguanylate cyclase
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940748|gb|ADR19940.1| response regulator receiver modulated diguanylate cyclase
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 435

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 88/190 (46%), Gaps = 13/190 (6%)

Query: 77  TISLLLGYISGSILKELFISYNRIS----QLSRIDCLSGLLNHSAFISSLG-------SY 125
           T S++L   +    K+L+   +RI+    Q++  D ++GL N    +  L         Y
Sbjct: 234 TESIMLRVTANIRTKKLYDYLDRINNELYQMATTDPMTGLYNRRYILEQLNILNYNFERY 293

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
               S++  D+D FK IND +GH  GDKVI   + ++        FVGR GGEE      
Sbjct: 294 GTAFSVILMDLDKFKSINDTYGHDCGDKVIIDFAQRVKSSVRKTDFVGRFGGEELIVVLQ 353

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQAL 244
              E+    +   +   I NS +  S+   I  T S G+       P I   I RAD  L
Sbjct: 354 NIDEENLYKITKKILYSIRNSSVTYSNF-VISYTTSIGVKYCNSYYPNIDEYIKRADHLL 412

Query: 245 YVAKKSGRNR 254
           Y+AK++GRNR
Sbjct: 413 YLAKENGRNR 422


>gi|256032860|pdb|3I5B|A Chain A, Crystal Structure Of The Isolated Ggdef Domain Of Wpsr
           From Pseudomonas Aeruginosa
 gi|256032861|pdb|3I5B|B Chain B, Crystal Structure Of The Isolated Ggdef Domain Of Wpsr
           From Pseudomonas Aeruginosa
          Length = 179

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 12/161 (7%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L            +LS++  D+DYFK  ND FGH  GD+ +  ++
Sbjct: 6   DGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVA 65

Query: 160 DQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217
             +      +     R GGEEFA    G+S   A +LA  +R+ +E+ QI +    P  H
Sbjct: 66  GAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHDQPRPGSH 125

Query: 218 ITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +T+S G++        +    +I  ADQALY AK +GRN+V
Sbjct: 126 LTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGRNQV 166


>gi|197337767|ref|YP_002157748.1| sensory box/ggdef family protein [Vibrio fischeri MJ11]
 gi|197315019|gb|ACH64468.1| sensory box/ggdef family protein [Vibrio fischeri MJ11]
          Length = 482

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 87/174 (50%), Gaps = 9/174 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEK--LSIVFFDIDYFKQI 142
           LK+     ++ S+L+  D L+G+ N  AF            N+K   S++  DID FK+ 
Sbjct: 306 LKKTRAQKDKYSELAYNDYLTGVNNRRAFEKQANKVFKTYQNDKQVFSLIMCDIDNFKEY 365

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH VGD++I   S+           V RLGG+EF        +++A ++A  L+ +
Sbjct: 366 NDKFGHDVGDQMITAFSEACSAQINQDDIVARLGGDEFIVLLHHKDKEQAVMVAESLQNV 425

Query: 203 IENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
           I +  + +  G  + +T S G+A        +  ++  AD  LY AK++GRN V
Sbjct: 426 IRDLSV-LVDGQELSMTCSMGVATVSELTTSLHELLNIADTQLYKAKEAGRNCV 478


>gi|145300867|ref|YP_001143708.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853639|gb|ABO91960.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 333

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 86/161 (53%), Gaps = 11/161 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           QL+  D L+G  +       +         +++ LS++  D+D FKQIND+ GH  GD+ 
Sbjct: 175 QLAETDALTGAASRYRLERDIQMECERAKRFHQPLSVIAMDVDDFKQINDSHGHAAGDQT 234

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +  ++         + R GG+EF      ++  +A  +A+ LR++I  S++      
Sbjct: 235 LINIVARVQSHIREIDLLARWGGDEFMVVLPNTALADAWRVADKLRELIAQSRV----CE 290

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT+S G+AE    EP+S ++ R D+ALY AK +G+N++
Sbjct: 291 QLDITLSFGLAEYRLNEPLSQLMVRVDRALYQAKLAGKNQI 331


>gi|194367449|ref|YP_002030059.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
 gi|194350253|gb|ACF53376.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
          Length = 524

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 81/164 (49%), Gaps = 10/164 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +++ SR D L+GLLN      +L +   +    +I+  DID FK IND  GH VGD  I 
Sbjct: 362 LNRASRTDPLTGLLNRRGLQQALDALQVQGIPFAILALDIDRFKTINDAHGHDVGDAAIV 421

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++DQ+         + R GGEEF     G   + A      LR+ I +        P  
Sbjct: 422 HIADQMRRYSRDSDILCRAGGEEFLLLLPGIGTESARQAGERLRQHIADHPFE----PVG 477

Query: 217 HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            IT+S G+A     H +     +  AD+ALY+AK+ GRNRVV +
Sbjct: 478 TITVSLGVAHFPSFHVD-AEQALRLADKALYLAKEQGRNRVVVY 520


>gi|78046228|ref|YP_362403.1| putative signal transduction protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78034658|emb|CAJ22303.1| putative signal transduction protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 326

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 83/180 (46%), Gaps = 19/180 (10%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF-----------ISSLGSYNEKLSIVFFDIDYFKQI 142
           F +Y  +   ++ D L+GL N   F             S       L IV  DID+FK++
Sbjct: 135 FQNYRSLLDDAQRDALTGLRNRKTFDDVILRLFAGGADSAAEQGVWLGIV--DIDHFKRV 192

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH  GD+V+  ++  +   F     + R GGEEF     G     A  L    R  
Sbjct: 193 NDTFGHLYGDEVLLLVAQLMQRAFRQDDLLFRFGGEEFVIVLRGVDRDTAVSLFERFRLA 252

Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +          P +  +T+S GI E  H   IS ++  AD+ALY AK++GRNR   ++++
Sbjct: 253 VAEHLF-----PQVGQVTLSTGIVELTHGRLISEMLDEADKALYWAKQNGRNRAAVYAEL 307


>gi|86144454|ref|ZP_01062786.1| GGDEF family protein [Vibrio sp. MED222]
 gi|85837353|gb|EAQ55465.1| GGDEF family protein [Vibrio sp. MED222]
          Length = 338

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 81/155 (52%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D  + L N  +F   I +L    + L ++  DID+FK  ND +GH  GD V+  ++ +L 
Sbjct: 182 DSTTTLYNRRSFDRDIETLCEAKQPLCLILLDIDHFKNFNDTYGHLFGDMVLKGIARKLK 241

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221
            +    +   R GGEEFA      S + A  LA+  R+ +E   I +  SG  +  IT S
Sbjct: 242 QMCREGISAYRFGGEEFAIIVPNKSLRIARQLADTNRRSLEKLSIKDRRSGQQVGSITAS 301

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+AE    E   ++I RAD+ LY AK  GRNRV+
Sbjct: 302 FGVAELEPGESAQSLIERADKLLYEAKSLGRNRVM 336


>gi|318040733|ref|ZP_07972689.1| diguanylate cyclase [Synechococcus sp. CB0101]
          Length = 311

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 76/152 (50%), Gaps = 7/152 (4%)

Query: 107 DCLSGLLNHSAFISSLGSYN--EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+G LN       L S     +L+++  DID+FK IND  GH  GD V+  ++  L  
Sbjct: 161 DALTGALNRHWLDQHLESLRLCPELALLMVDIDHFKAINDTHGHSCGDAVLRAVATTLRH 220

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHITISAG 223
                  + RLGGEEF       + Q AA  L   LR+ ++    ++ S     +TIS G
Sbjct: 221 ALRPSDALVRLGGEEFLVICRQEASQAAAEGLGERLRQAVQ----HLQSDDLPPVTISIG 276

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +A R   E     + RAD ALY AK++ RNRV
Sbjct: 277 VALRTPGEGWEAQLERADTALYRAKRNDRNRV 308


>gi|317487171|ref|ZP_07945972.1| GGDEF domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316921572|gb|EFV42857.1| GGDEF domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 535

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 13/185 (7%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYF 139
           L   SG + +E     ++ + LS  D L+G+ N  A   ++     +  L+++  D+D+F
Sbjct: 356 LNTRSGQLAQE----RDQYADLSFRDALTGVYNRRALEETMERIPARTPLALLMLDLDFF 411

Query: 140 KQINDNFGHPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           K  ND FGH  GD   K +A  + + ++     +F  R GGEEF     G+ +  A  +A
Sbjct: 412 KNYNDRFGHQAGDAALKAVAQATQKALLRDSDRIF--RYGGEEFTIILAGAGQYSAMTVA 469

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNR 254
             + + +    +      +  +T+S GIA R   E   I  ++  ADQALY AK SGRNR
Sbjct: 470 QRILEEVAALDLVHPDSRTGKLTVSIGIAHRSFGEDADICEVLTHADQALYEAKTSGRNR 529

Query: 255 VVCFS 259
           +V F 
Sbjct: 530 IVLFE 534


>gi|310780113|ref|YP_003968445.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
 gi|309749436|gb|ADO84097.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
          Length = 525

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 70/136 (51%), Gaps = 2/136 (1%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           NE +SI   D+D+FK  ND +GH  GD V+  + + L   F +  F+ R GGEEF   + 
Sbjct: 388 NELISIAMIDVDHFKLYNDTYGHIQGDTVLMKIGEMLKSTFYSSDFIMRYGGEEFLVFSK 447

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQA 243
           G + QE   L N     + N +I  S G    +T S GI  A     + +   I  AD  
Sbjct: 448 GKAAQEINRLINSFISNLRNEKIEHSKGIDGVVTASVGIYSAVPTKDDDLEEFIKIADSK 507

Query: 244 LYVAKKSGRNRVVCFS 259
           LY AK++GRN+++ + 
Sbjct: 508 LYKAKETGRNKIIFYK 523


>gi|220933986|ref|YP_002512885.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995296|gb|ACL71898.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 803

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/159 (33%), Positives = 81/159 (50%), Gaps = 9/159 (5%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N   F       ++S   ++ +L++++FD+D FK IND+FGH  GD V+
Sbjct: 381 LAEHDALTGLCNRHCFEQRLEKAMASAQRHHHRLALLYFDLDEFKAINDSFGHRAGDAVL 440

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++ +L  V      + R+GG+EFA      S +EA  LA  L   +         G  
Sbjct: 441 VRVASELAPVVRGGDMLARVGGDEFALLTQIDSIEEARSLAARLCGTVAKIPFRF-RGTG 499

Query: 216 IHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           +  T S GIA    H E    ++ RAD A+Y AK  G+N
Sbjct: 500 VRSTASVGIAVYPEHGETTEDLVARADIAMYQAKGLGKN 538


>gi|74316170|ref|YP_313910.1| diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans
           ATCC 25259]
 gi|74055665|gb|AAZ96105.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 928

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 11/164 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-----SYNEKL--SIVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D L+GL N   F   L      S  +K+  +++FFD+D FK IND++GH  G
Sbjct: 497 RLVYLAERDALTGLYNRHRFQQELARTMLDSDRQKMQCAVMFFDLDEFKTINDSYGHRAG 556

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++  ++ ++  +      + RLGG+EFA       + EA  LA+ +   I  +QI   
Sbjct: 557 DALLIRVAGEISALVRRNEVLARLGGDEFAILLPALQDNEAEALADRVVHAI--AQIPFR 614

Query: 212 -SGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRN 253
             G S+ +T S GIA    H      ++ RAD A+Y AK +G+N
Sbjct: 615 FEGQSLRVTTSVGIAYYPAHAVDADDLVARADIAMYQAKDAGKN 658


>gi|237799659|ref|ZP_04588120.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022514|gb|EGI02571.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 398

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 91/187 (48%), Gaps = 25/187 (13%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDID 137
           + G +L+   + Y      +R D L+ L N       L S  E+       ++I+  DID
Sbjct: 221 LRGRLLQVQLLEY------ARTDALTRLFNRRYQDEVLTSVWERARKKQASVAIILLDID 274

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQL---VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           +FK  NDN+GHP GD  +  L +++       G   F  R GGEE     + +   +A  
Sbjct: 275 HFKSYNDNYGHPQGDVCLKLLCNEIQRSATACGAMAF--RFGGEE-VLVLMNADAGQATK 331

Query: 195 LANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIS---TIIYRADQALYVAKKS 250
           +A  L+  +   ++ + + G   H+TIS G+A      P++   T+I  AD ALY AK++
Sbjct: 332 MAETLKASVAALKLPHPAQGEGAHVTISLGVASAI--APLTTYDTLISAADDALYAAKRA 389

Query: 251 GRNRVVC 257
           GRN V C
Sbjct: 390 GRNAVFC 396


>gi|330875724|gb|EGH09873.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 730

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 107/209 (51%), Gaps = 21/209 (10%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH---- 115
           G   +L  ++  + ++ T  LL+   +   + +L  +  +I  L+  D L+GL N     
Sbjct: 246 GAPLVLDVSVEFITLNNTACLLM---NARDIGQLKSAQAQIQHLTYHDPLTGLPNRALLM 302

Query: 116 ---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
              S  +S L   N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         V
Sbjct: 303 DRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSVIAARLEASVRQEDTV 362

Query: 173 GRLGGEEFAA---AALGSSEQ---EAAILANDLRKIIENSQINISSGPSIHITISAGIA- 225
            RLGG+EF        GS EQ   +  +LA++LR ++  ++     G  + +T S GI  
Sbjct: 363 ARLGGDEFVVLICGLDGSLEQVTHQVRVLADNLRVLL--AEPMFLDGHRLQVTPSVGIVL 420

Query: 226 -ERCHKEPISTIIYRADQALYVAKKSGRN 253
                  P + ++ RAD ALY AK SGRN
Sbjct: 421 IPDDGLTP-ADLLKRADIALYRAKDSGRN 448


>gi|324006150|gb|EGB75369.1| diguanylate cyclase domain protein [Escherichia coli MS 57-2]
          Length = 430

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 77/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++ISS P    T
Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISSLPRF--T 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|302185396|ref|ZP_07262069.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 298

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 108/232 (46%), Gaps = 19/232 (8%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG--- 87
            S+FF  FI  +   A I+L    +     L  + V +  L  + +  S LLG       
Sbjct: 45  MSVFFVKFIDYIAAAALIWLIMWEMD----LTAVGVNHAPLFYVFLISSTLLGGCLNATF 100

Query: 88  -SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVF--FDIDYFKQ 141
            S++ +   + +R  +LS  D L+   N  A ++SL +     EK S+ F   D+D+FK 
Sbjct: 101 LSLVMQTMTARDRYQELSETDTLTHAPNRRALVASLNTALACAEKSSLWFAMIDLDHFKS 160

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH VGD V+   +  L    G   F GRLGGEEF      ++  +A     +L +
Sbjct: 161 INDTHGHDVGDNVLVGFATLLKGTKGLIAF-GRLGGEEFGVILSAANATDAVRALEELLR 219

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           + +  +        +  + S G+A     E ++ ++  AD+ LY AK++GR 
Sbjct: 220 LAQKDE-----AAQVPYSFSGGVASLSRVETVNDLLKEADENLYHAKRNGRK 266


>gi|227114228|ref|ZP_03827884.1| hypothetical protein PcarbP_14743 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 552

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 79/163 (48%), Gaps = 10/163 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D ++ LLN     S L  +    +  +++  DID FK IND +GH VGD VI +LS  + 
Sbjct: 394 DPMTELLNRRGLDSVLRYWQMGQKSFAVIALDIDRFKLINDTYGHDVGDNVIRYLSQLIR 453

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   + R GGEEF      +    A  +A  LR+ +E S I +      +ITIS G
Sbjct: 454 TSSRDSDILCRSGGEEFLILLPETRLDVALSIAERLRQRMEESTIPVVG----NITISLG 509

Query: 224 IA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +A         PI      AD+ALY AK+ GRNRV+  S  E 
Sbjct: 510 VALWEPGVSDMPIDRTFKLADEALYQAKQEGRNRVISASGNEQ 552


>gi|170733260|ref|YP_001765207.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3]
 gi|169816502|gb|ACA91085.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3]
          Length = 492

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 92/194 (47%), Gaps = 14/194 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128
           I +SLLLG    S L+    + + +  L+R D L+GL N  +F   L +   +       
Sbjct: 300 IALSLLLG----SQLRRRMRAESELVLLARTDGLTGLSNRRSFGEVLDNEWRRARRARSV 355

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187
            S++F D+D FK  ND +GH  GD  +A ++  +      P     R GGEEF      +
Sbjct: 356 FSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTAARYGGEEFVVLLPDT 415

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALY 245
           S+  AA +A  +R  I+   +  +      +T S G+A    ++      +I  AD+ALY
Sbjct: 416 SQTGAAQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPEQEGQPDAVIKAADEALY 475

Query: 246 VAKKSGRNRVVCFS 259
            AK +GRN+V    
Sbjct: 476 YAKATGRNKVAALQ 489


>gi|116251719|ref|YP_767557.1| transmembrane GGDEF sensory box protein [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115256367|emb|CAK07448.1| putative transmembrane GGDEF sensory box protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 423

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 6/134 (4%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  D D+FK +ND +GH  GD+V+  ++ +L     +   V R GGEEF A   G+  
Sbjct: 290 TVLIIDADHFKDVNDGYGHLQGDEVLKAIAARLGTTLRSSDRVFRFGGEEFVAVCPGTGH 349

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVA 247
           +E  +LA  LR  I  S       P   IT+S G+A    ++ I  + ++  AD  LY A
Sbjct: 350 EEGLLLAERLRWTIATSVKTPDDSP---ITVSIGVAT-ADEDGIDFTAVLTAADGRLYAA 405

Query: 248 KKSGRNRVVCFSDI 261
           KKSGRN VV  S +
Sbjct: 406 KKSGRNCVVGRSGV 419


>gi|110634808|ref|YP_675016.1| diguanylate cyclase [Mesorhizobium sp. BNC1]
 gi|110285792|gb|ABG63851.1| diguanylate cyclase [Chelativorans sp. BNC1]
          Length = 239

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 108/234 (46%), Gaps = 35/234 (14%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LVENLSLVIISITISLLLGYISGSILK 91
           IF+SIF +  +F+  +    I L   Y L YI L +++ L+ ++                
Sbjct: 22  IFYSIFFSDRLFLDLLLSGIIVLVVAYPLSYIFLTQSVRLMRMA---------------- 65

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQIND 144
                   I + SRID LS +LN  +F+ +               + ++ DID+FK IND
Sbjct: 66  ------EEIERRSRIDDLSQVLNRKSFLDAADDLLAASSSPSGAGTFLYLDIDWFKTIND 119

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKII 203
             GH +GD+VI  +   L         VGRLGGEEF      G  E  AA+ +   ++  
Sbjct: 120 ERGHAMGDEVIRRMGALLQSCVRHGDIVGRLGGEEFGIFLPAGDDEDAAAVYSRIAQRAK 179

Query: 204 E-NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E   ++ +      H+++SAG+      +  + ++  AD+ LY AK  GRNR++
Sbjct: 180 EIGQELGLD---DRHVSLSAGMISHRPGQGFNELMKLADKRLYRAKSKGRNRLI 230


>gi|217970320|ref|YP_002355554.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
 gi|217507647|gb|ACK54658.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
          Length = 1013

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 12/167 (7%)

Query: 99   RISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPV 150
            R+++L+  D L+GL N  +F++ L +  +          +++  DID+FK +ND  GHPV
Sbjct: 841  RLAELAATDPLTGLPNRRSFLACLDAALDDARREPARGSALLMIDIDHFKHVNDTHGHPV 900

Query: 151  GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA--ILANDLRKIIENSQI 208
            GD+V+   +  +          GRLGGEEFA               LA  LR+ +E +  
Sbjct: 901  GDEVLQHAARLIRGGLRQHDRAGRLGGEEFAVLLDDVDADTDTALTLAERLRRSVEAAPA 960

Query: 209  NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              ++G ++ +TIS G+A     +P + ++  AD ALY AK+ GRNRV
Sbjct: 961  ATAAG-AVSLTISLGLALVSGGDP-ARVLGDADAALYRAKRGGRNRV 1005


>gi|78222060|ref|YP_383807.1| diguanylate cyclase [Geobacter metallireducens GS-15]
 gi|78193315|gb|ABB31082.1| diguanylate cyclase (GGDEF domain) [Geobacter metallireducens
           GS-15]
          Length = 411

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 24/171 (14%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+GL +  A    L     + ++   D+D+FK+ ND +GH VGD+V+  ++ +L  V 
Sbjct: 241 DELTGLPSRRALNEQLTWLGRRYTVAMVDVDHFKRFNDTYGHDVGDQVLRMVASKLRGVG 300

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI--SSGPS--------- 215
           G    V R GGEEF         +E       LR+ I + Q+ +  +  PS         
Sbjct: 301 GGGK-VYRYGGEEFTILFHRKEREEVLADLEGLRRTIADYQMRLRGTDRPSSSKEGKKLR 359

Query: 216 ---------IHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRV 255
                    + +T+S G+AE     + P + +I  ADQALY AK  GRNRV
Sbjct: 360 YGTGRGNATVSVTVSIGVAESSADRRRP-ADVIKAADQALYRAKGGGRNRV 409


>gi|28899140|ref|NP_798745.1| putative GGDEF family protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153836823|ref|ZP_01989490.1| putative ggdef family protein [Vibrio parahaemolyticus AQ3810]
 gi|254229519|ref|ZP_04922933.1| ggdef domain protein [Vibrio sp. Ex25]
 gi|260364735|ref|ZP_05777322.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
 gi|260876775|ref|ZP_05889130.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|260898147|ref|ZP_05906643.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|260900338|ref|ZP_05908733.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|262393466|ref|YP_003285320.1| putative GGDEF family protein [Vibrio sp. Ex25]
 gi|28807364|dbj|BAC60629.1| putative GGDEF family protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749969|gb|EDM60714.1| putative ggdef family protein [Vibrio parahaemolyticus AQ3810]
 gi|151937984|gb|EDN56828.1| ggdef domain protein [Vibrio sp. Ex25]
 gi|262337060|gb|ACY50855.1| putative GGDEF family protein [Vibrio sp. Ex25]
 gi|308089065|gb|EFO38760.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|308091516|gb|EFO41211.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|308108576|gb|EFO46116.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|308115315|gb|EFO52855.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
          Length = 306

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 8/163 (4%)

Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S+ID L+ + N   F   L        + + + +++ FD+D+FK IND  GH  GD V+ 
Sbjct: 141 SQIDALTNIYNRRVFFEKLTEEVIKSQTPDYQSALLLFDLDFFKVINDKRGHDAGDYVLE 200

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            L+D +  +        R+GGEEFA     +S   A  +  ++R  I+N Q        I
Sbjct: 201 TLADLVSHLLVKDEIFARVGGEEFAIILPETSLSAAKEVGEEVRSHIQNCQFEFEK-IEI 259

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +T+S G+ +    E    +   AD+ALY AK++GRN V    
Sbjct: 260 PVTVSVGVVKIGRNETTKRLYAHADKALYAAKRNGRNCVATLD 302


>gi|262192379|ref|ZP_06050532.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
 gi|262031732|gb|EEY50317.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
 gi|327484042|gb|AEA78449.1| GGDEF family protein [Vibrio cholerae LMA3894-4]
          Length = 385

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 102/198 (51%), Gaps = 18/198 (9%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           I+V+NL   II  T+ +L       + +E  I ++R+  +   D L+G  N   F   + 
Sbjct: 194 IVVQNLFFFIILGTMLMLF------LFEE--IEWHRLRSIQ--DELTGAFNRRHFKEQVQ 243

Query: 124 SYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
              ++      +   DID+FKQIND++GH +GD VI ++   L  +  T   V R GGEE
Sbjct: 244 QKLKQSKQKSMVALVDIDHFKQINDSYGHDIGDSVITYVVRHLESLALTECLVARYGGEE 303

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIY 238
           FA  A  +  +  +   + +R  I +   ++   P  + ++I A I E  H+     ++ 
Sbjct: 304 FAIFARENDFERVSQALDSVRDAI-SVGFHVEQQPLKVSVSIGAVIFESSHE--YGEVLR 360

Query: 239 RADQALYVAKKSGRNRVV 256
           +AD+ALY AK+ GRNR++
Sbjct: 361 QADKALYQAKQQGRNRIM 378


>gi|254436984|ref|ZP_05050478.1| cyclic diguanylate phosphodiesterase domain protein [Octadecabacter
           antarcticus 307]
 gi|198252430|gb|EDY76744.1| cyclic diguanylate phosphodiesterase domain protein [Octadecabacter
           antarcticus 307]
          Length = 686

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 10/187 (5%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVF 133
           ++LL  I  S LKE   + +    L++ D L+ L N S   S L     +      +++F
Sbjct: 234 AILLTAIDVSELKE---ARDTARHLAQRDQLTNLHNRSYLQSYLEGREGRGDTAGCAVIF 290

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           FD+D FK IND +GH  GD V+  ++ +   V      V RLGG+EF     G S +   
Sbjct: 291 FDVDRFKLINDRYGHDAGDTVLKQIATRARAVLSPQDLVARLGGDEFVIVIDGDSSKATL 350

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252
            L  + R+   +  I +     I  TIS GIA      +  ST++ +AD ALY +K+ GR
Sbjct: 351 ELQVEKRRHAISKTI-LHDKTRIDATISVGIAGHSSDTDSFSTVMRQADIALYASKQGGR 409

Query: 253 NRVVCFS 259
           N    F+
Sbjct: 410 NCTTFFT 416


>gi|218779529|ref|YP_002430847.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01]
 gi|218760913|gb|ACL03379.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01]
          Length = 470

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 96/181 (53%), Gaps = 14/181 (7%)

Query: 88  SILKELFISYNR---ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDID 137
           S+++++  + +R   + + + +D L+ + N  A+   L     +        S++  D+D
Sbjct: 289 SLMRQVGEAQSRARILEEQAMVDALTEIPNRRAYEERLAQEWSRYQRSGSAFSMLMVDLD 348

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK IND FGH VGD  +  +   L     +  F+ R GGEEF    L  + +E A++A 
Sbjct: 349 RFKSINDTFGHAVGDTCLQGVVSLLKPNLRSSDFLARFGGEEF-VIILPDTTREGAVMAG 407

Query: 198 D-LRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + LRK +E +   +  G  +++TIS G  + R   +  + +  R D+A+Y AK+SGRNR+
Sbjct: 408 EKLRKKVEKANF-VYDGEKVNVTISVGGTKVREADKDTNDLFIRLDEAMYQAKESGRNRM 466

Query: 256 V 256
           +
Sbjct: 467 I 467


>gi|71280714|ref|YP_267304.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71146454|gb|AAZ26927.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 589

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 94/201 (46%), Gaps = 12/201 (5%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
           V N+ L+I  + ++L L  + G+    L  ++ R+ +L+  D L+G+ N   F     S 
Sbjct: 375 VVNIQLMISILMVTLALLVLWGA---RLLKAHKRVRELAEYDPLTGIYNRGHFTHVTNSA 431

Query: 126 -------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                   + LS++ FD+D+FK++ND+FGH  GD  +         +        RLGGE
Sbjct: 432 LKYCKNAQQDLSVIMFDLDHFKKVNDSFGHACGDWALKETIKVCQRIGRKNDIFARLGGE 491

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTII 237
           EF       +   A + A   R  IE   I   SG    IT S G+ + +     +  ++
Sbjct: 492 EFCLVLTCCTIDVAMLRAEACRAAIEEI-ITEESGNDFSITASFGVTDIKRSGFTLDKLL 550

Query: 238 YRADQALYVAKKSGRNRVVCF 258
             AD A Y +K +GRNRV  F
Sbjct: 551 ADADMAAYASKNAGRNRVTLF 571


>gi|66047902|ref|YP_237743.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63258609|gb|AAY39705.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 432

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 22/184 (11%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           Q++  D L+GL    A    +        +   D+D+FK+ ND  GH VGD+V+  ++ +
Sbjct: 240 QMAFRDELTGLPGRRALNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASK 299

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI----------- 210
           L  +        R GGEEFA      S  E       +R+ I + +I +           
Sbjct: 300 LSKITNGGGKAYRYGGEEFAIVFAAKSIDECMPHLEAIRETIASYEIQLRNKDNRPQDDQ 359

Query: 211 --------SSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                   +   S+ +T+S G+AER   H+ P   ++  ADQALY AK +GRN VV +  
Sbjct: 360 QGRQRRSGAQAGSVSVTVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQ 418

Query: 261 IENN 264
           +   
Sbjct: 419 LNRR 422


>gi|330970885|gb|EGH70951.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 424

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 22/184 (11%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           Q++  D L+GL    A    +        +   D+D+FK+ ND  GH VGD+V+  ++ +
Sbjct: 232 QMAFRDELTGLPGRRALNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASK 291

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI----------- 210
           L  +        R GGEEFA      S  E       +R+ I + +I +           
Sbjct: 292 LSKITNGGGKAYRYGGEEFAIVFAAKSIDECMPHLEAIRETIASYEIQLRNKDNRPQDDQ 351

Query: 211 --------SSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                   +   S+ +T+S G+AER   H+ P   ++  ADQALY AK +GRN VV +  
Sbjct: 352 QGRQRRSGAQAGSVSVTVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQ 410

Query: 261 IENN 264
           +   
Sbjct: 411 LNRR 414


>gi|330447369|ref|ZP_08311018.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491560|dbj|GAA05515.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 675

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 17/180 (9%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFG 147
           +E+      I QL ++D L+GLLN   F   L    +    + +++ DID FK IND+ G
Sbjct: 240 QEIKRQQGHIEQLVQMDPLTGLLNRHGFTRQLEQLMKAEVPVVMLYIDIDNFKNINDSLG 299

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GDKV+  ++ +L  +      +G L G+EF A  L + E E         +II    
Sbjct: 300 HHIGDKVLQEIAQRLRRLLPETAIIGYLSGDEF-AILLPNPEHERT------GEIISEQI 352

Query: 208 INISSGP------SIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           I + + P        H+  S G +    H      ++  AD A+Y AK  GRNR+V F+D
Sbjct: 353 IALVNQPFELRHFRKHLACSIGMVTSPGHGSDARMMLQNADTAMYEAKHRGRNRLVEFND 412


>gi|308186989|ref|YP_003931120.1| hypothetical protein Pvag_1481 [Pantoea vagans C9-1]
 gi|308057499|gb|ADO09671.1| Uncharacterized protein yciR [Pantoea vagans C9-1]
          Length = 661

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 94/185 (50%), Gaps = 18/185 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      S  ++  +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRVLANTDTVTGLPNRNAIHQQISLALERSEGDETGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA---- 196
           ++ND +GH  GD+++  +S  ++   G    +GRLGG+EF   A  +S  +AA+ A    
Sbjct: 279 KVNDAYGHMFGDQLLQAVSLAILSCLGKDQTLGRLGGDEFVVLAEHTS--QAALEAMSSR 336

Query: 197 --NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
               LR+      I + SG SI I  +       H +   ++I  AD A+Y AK++GR +
Sbjct: 337 ILERLRQPFRIGLIEVYSGCSIGIAFAP-----LHGDDRESLIRNADTAMYHAKENGRGK 391

Query: 255 VVCFS 259
              F+
Sbjct: 392 FCVFA 396


>gi|87119403|ref|ZP_01075301.1| GGDEF domain protein [Marinomonas sp. MED121]
 gi|86165794|gb|EAQ67061.1| GGDEF domain protein [Marinomonas sp. MED121]
          Length = 410

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 15/199 (7%)

Query: 77  TISLLLG----YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSY 125
           T S +LG    ++   I+K    +   I   +  D L+ L+N   F       +    + 
Sbjct: 211 TSSFILGAILLFMIHRIMKSRDAATQEIHYFAHFDPLTKLINRRYFFELFDQALDEQNNT 270

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              L +   D+D FK +ND  GH  GDK +   ++ L  V      VGR GG+EF    +
Sbjct: 271 KPPLQLCICDLDQFKGVNDTLGHQAGDKALIKFAEILSEVMTNQGIVGRFGGDEFVICFI 330

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPIST--IIYRAD 241
             S QE   L   +R  +E +   + +  S  IT + G+A  E   K  +S   +   AD
Sbjct: 331 DKSRQECENLLETIRARLEKTVFTLDNASSFSITGTFGVAHLEGGQKTKLSMNHLFETAD 390

Query: 242 QALYVAKKSGRNRVVCFSD 260
           +ALY+AK++GRN+V   ++
Sbjct: 391 KALYIAKQNGRNQVCLLNE 409


>gi|323966974|gb|EGB62400.1| GGDEF domain-containing protein [Escherichia coli M863]
          Length = 479

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 23/165 (13%)

Query: 107 DCLSGLLNHSAFISSLGSYN---EKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F + L + +   +K S  ++  DID+FK++ND +GHPVGD+VI      
Sbjct: 309 DPLTNIFNRNYFFNELKAQSASAQKTSYCVMIMDIDHFKKVNDTWGHPVGDQVI----KT 364

Query: 162 LVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISS 212
           +V + G  +     + R+GGEEF      +  + A +LA  +R  +E     N +  I  
Sbjct: 365 VVSIIGKSIRPNDLLARVGGEEFGVLLTETDTESAKVLAERIRANVERLTGDNPEYAIPQ 424

Query: 213 GPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
              + I+I A + +     P    IYR AD ALY AK++GRN++V
Sbjct: 425 --KVTISIGAVVTQGSALNPNE--IYRMADNALYEAKETGRNKIV 465


>gi|315185415|gb|EFU19187.1| diguanylate cyclase [Spirochaeta thermophila DSM 6578]
          Length = 385

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 110/229 (48%), Gaps = 27/229 (11%)

Query: 46  ANIFLFYIGLTPFYGL----EYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101
           A I +  IG+   YGL    + +L E+ +   ++  I  L+G++S S+        N I 
Sbjct: 147 AEILVPVIGMGGVYGLIVFGKKVLGEDYTPQELAY-IGRLVGFVSISL-------QNNIH 198

Query: 102 QLSRI-DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
             S I D  +G+ N S F+  L         Y   L ++  D+D+FK  ND +GH  GD+
Sbjct: 199 YRSSIMDFKTGIYNASFFMRRLEEELYRVKRYGGHLGLIILDVDHFKLFNDRYGHLAGDE 258

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  ++  +           R GGEEF     G++   A I+A  +R  IE  ++     
Sbjct: 259 VLISIARDIKQNLRKGDVAARYGGEEFVVLLPGANRNAAYIVAERVRHSIELMKVYFED- 317

Query: 214 PSIHITISAGIAERCHK----EPISTIIYRADQALYVAKKSGRNRVVCF 258
             +H+T+S G+   C +    +P   +I  ADQALY++K+ GRNR   +
Sbjct: 318 KILHVTVSVGVTS-CTRYRLLDP-RKLIEEADQALYLSKERGRNRTTVY 364


>gi|313683143|ref|YP_004060881.1| response regulator receiver modulated diguanylate cyclase
           [Sulfuricurvum kujiense DSM 16994]
 gi|313156003|gb|ADR34681.1| response regulator receiver modulated diguanylate cyclase
           [Sulfuricurvum kujiense DSM 16994]
          Length = 310

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 11/179 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L +  + +  LSRID L+ + N   F          +   ++ ++I+  D+DYFK+ ND+
Sbjct: 126 LKLKGDWLEDLSRIDGLTHIPNRRYFDEEYQKKCKEMIREHKTVAILMIDVDYFKRYNDH 185

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD+ +  ++  L      P   V R GGEEF         + AA +A +L K + 
Sbjct: 186 YGHGKGDECLIKIAGALKSSLKRPSDMVARYGGEEFIVILQNIDHEGAANVAQNLIKAVS 245

Query: 205 NSQINIS-SGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSD 260
           +  I    S  + H+TIS G+A +   E + T  ++  AD ALY AK+ GRN++V F +
Sbjct: 246 DLGIKHEYSSTADHVTISLGMAFKPADEKVCTEELLKTADDALYRAKEGGRNQLVIFEN 304


>gi|291549868|emb|CBL26130.1| diguanylate cyclase (GGDEF) domain [Ruminococcus torques L2-14]
          Length = 376

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 113/241 (46%), Gaps = 24/241 (9%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS 88
           I+F  F ++ I+T + +      ++ L   + + +++V+ L      I +  +   +   
Sbjct: 139 IFFDSFRNLKISTFLMV------FLMLAFCFTIRHLIVKPLISYNECIRLGEIFPVLGAV 192

Query: 89  ILKELFISYNRI-------SQLSR----IDCLSGLLNHSAFISSLGSY-----NEKLSIV 132
            L+ L ++YN++        QL R     D L+   N  +F   L  Y     N   +++
Sbjct: 193 ELQNLAVTYNQVYRENQQTQQLIRHQAEYDALTDCFNRRSFNKFLSLYETDAENHPFALI 252

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID FK +ND +GH +GD ++  ++D L   F    +V R+GG+EFA   +  +    
Sbjct: 253 LIDIDVFKSVNDTYGHAIGDVILKKVADYLKAAFRNNDYVCRIGGDEFAILMVEMTTDLQ 312

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             + N +  +  N Q++        +++SAG+A    + P   I   AD+ALY  K +GR
Sbjct: 313 YTIKNKIDSV--NQQLSSPEKGIPKVSLSAGVAFSDRENPGENIFEDADKALYKVKGNGR 370

Query: 253 N 253
           N
Sbjct: 371 N 371


>gi|239618376|ref|YP_002941698.1| diguanylate cyclase [Kosmotoga olearia TBF 19.5.1]
 gi|239507207|gb|ACR80694.1| diguanylate cyclase [Kosmotoga olearia TBF 19.5.1]
          Length = 899

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 99/185 (53%), Gaps = 16/185 (8%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVF 133
           L+GY+   +L  +F +Y R +  ++ D L+GL     F S L         + E+ S++ 
Sbjct: 717 LMGYLE-PLLTLVFRNYMRYTMATK-DALTGLYTRWYFESRLEEEFARSKRFGEEFSVIM 774

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK +ND+ GH VGD+++  ++  L+        VGR GGEEF      +  ++A 
Sbjct: 775 CDLDNFKVVNDSHGHIVGDEILKKIAKILLKGAREMDIVGRYGGEEFIILLPYAKHRDAV 834

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSG 251
            +A  L+++IE ++ ++       +T S G+A     H    + +++ ADQ  Y+AKK G
Sbjct: 835 RVAERLKELIEANKESLKD-----VTASFGVASYPAPHINNAADLLFCADQRCYLAKKLG 889

Query: 252 RNRVV 256
           +NRVV
Sbjct: 890 KNRVV 894


>gi|310641977|ref|YP_003946735.1| response regulator receiver protein [Paenibacillus polymyxa SC2]
 gi|309246927|gb|ADO56494.1| Response regulator receiver protein [Paenibacillus polymyxa SC2]
          Length = 374

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 97/203 (47%), Gaps = 12/203 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNH---SAFISSLGS 124
           L+L+I +    LL+  Y +    +EL IS   IS++S  D L+ L NH     F      
Sbjct: 173 LALIIQASGRDLLVDLYKTKRAQQELMISNAIISKMSMTDGLTKLYNHLSFQNFYEKALE 232

Query: 125 YNEKLSIV---FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
           Y E+ +I+     DID FK+IND +GH  GDK++  +S  +           R GGEEFA
Sbjct: 233 YAEQGAIIHLALVDIDNFKKINDTYGHQFGDKILEGISQIITEQITANDIPARYGGEEFA 292

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI---AERCHKEPISTIIY 238
                 + +EA  +  ++R+ +E           + +T+S G+    E  +K+       
Sbjct: 293 ILMFEHTFEEAYQIVENIRREVEKMTFQ-EKMQIVSVTVSIGLKSYTEDMNKDK-DVFFQ 350

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
             D  LY AK+SG+N++V    I
Sbjct: 351 ETDDYLYQAKRSGKNKIVALDHI 373


>gi|261210656|ref|ZP_05924948.1| GGDEF family protein [Vibrio sp. RC341]
 gi|260840141|gb|EEX66721.1| GGDEF family protein [Vibrio sp. RC341]
          Length = 440

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 12/161 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+G +N       L            + S++F D+DYFKQIND +GH +GD +
Sbjct: 269 EMAHRDALTGAINRHGIRDWLQEQARLVRWQLNQCSVLFIDLDYFKQINDVYGHTLGDDL 328

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   +  L         + R GGEEF      +  ++A  LA  LR  +EN    I  G 
Sbjct: 329 LREFALVLNREIRESDRLVRWGGEEFVVFCSQTHLEQAVELAERLRGCVENHHW-IHGGD 387

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              +T S GIA+    E I+  + RAD+ALY AK+ GRNR+
Sbjct: 388 ---LTCSIGIAQ-MGDERITETVSRADEALYRAKRLGRNRI 424


>gi|256375828|ref|YP_003099488.1| diguanylate cyclase [Actinosynnema mirum DSM 43827]
 gi|255920131|gb|ACU35642.1| diguanylate cyclase [Actinosynnema mirum DSM 43827]
          Length = 527

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 89/173 (51%), Gaps = 9/173 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDN 145
           ++++L  S  R+   +  D L+GL N + F   L +    +  ++++F D+D FK++NDN
Sbjct: 344 LVEQLRDSRERLRHQAYHDPLTGLPNRALFRERLAAALCADGPIALLFIDVDGFKEVNDN 403

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD V+  ++ +L         V RLGG+EF     G +  +  +    LR ++  
Sbjct: 404 YGHAEGDAVLRIVAQRLQRCVRECDTVARLGGDEFGVLIEGDAPPD-EVGRRVLRVLVAP 462

Query: 206 SQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256
            +  +       I  S GIA R H +P++   ++  AD A+Y AK+ G+  VV
Sbjct: 463 HRTALG---EHRIRASVGIARRAHGQPVAPDDLLGDADAAMYAAKRLGKGIVV 512


>gi|255745759|ref|ZP_05419707.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262158963|ref|ZP_06030075.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|262169322|ref|ZP_06037014.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|255736834|gb|EET92231.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262022135|gb|EEY40844.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|262029148|gb|EEY47800.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
          Length = 385

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 102/198 (51%), Gaps = 18/198 (9%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           I+V+NL   II  T+ +L       + +E  I ++R+  +   D L+G  N   F   + 
Sbjct: 194 IVVQNLFFFIILGTMLMLF------LFEE--IEWHRLRSIQ--DELTGAFNRRHFKEQVQ 243

Query: 124 SYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
              ++      +   DID+FKQIND++GH +GD VI ++   L  +  T   V R GGEE
Sbjct: 244 QKLKQSKQKSMVALVDIDHFKQINDSYGHDIGDSVITYVVRHLESLALTECLVARYGGEE 303

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIY 238
           FA  A  +  +  +   + +R  I +   ++   P  + ++I A I E  H+     ++ 
Sbjct: 304 FAIFARENDFERVSQALDSVRDAI-SVGFHVEQQPLKVSVSIGAVIFESSHE--YGEVLR 360

Query: 239 RADQALYVAKKSGRNRVV 256
           +AD+ALY AK+ GRNR++
Sbjct: 361 QADKALYQAKQQGRNRIM 378


>gi|254474323|ref|ZP_05087712.1| transcriptional regulator [Pseudovibrio sp. JE062]
 gi|211956598|gb|EEA91809.1| transcriptional regulator [Pseudovibrio sp. JE062]
          Length = 427

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 18/175 (10%)

Query: 98  NRISQLSRI---DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFG 147
           +RI++L+ +   D ++GL N     +++   ++        +     DID FKQIND FG
Sbjct: 251 DRITELTEMAHRDPMTGLFNRRHLYNTVDKLHKDQIRAGKAMRYAMIDIDRFKQINDKFG 310

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR---KIIE 204
           H  GD +I  ++ ++  +        R+GG+EF  A     E  +    ++LR    + +
Sbjct: 311 HETGDNLIISVAHRISDLLPPKSVAVRIGGDEFCVALPDIDEPTSKQFLSELRSSMPVTD 370

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                 +  P+I + +SAG     H++ +++ +  AD+ LY AKKSGRNR+V  S
Sbjct: 371 PGNDEHTFAPTISVGLSAG-----HEDSMASALRVADRCLYRAKKSGRNRIVTSS 420


>gi|186681989|ref|YP_001865185.1| diguanylate cyclase with PAS/PAC and GAF sensors [Nostoc
           punctiforme PCC 73102]
 gi|186464441|gb|ACC80242.1| diguanylate cyclase with PAS/PAC and GAF sensors [Nostoc
           punctiforme PCC 73102]
          Length = 888

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 25/177 (14%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGD 152
           + +L+ +D L+ + N   F   L +   +L       S++ FD+D+FK+ ND +GH  GD
Sbjct: 713 LQRLATLDGLTQIANRRRFDQYLENEWHRLKREQMPLSLILFDVDFFKRYNDTYGHLAGD 772

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAI-LANDLRK-----IIEN 205
             +  L   L  V   P   V R GGEEF A  L ++E E AI +A  +R+     II +
Sbjct: 773 DCLRQLGSALKSVIKRPADLVARYGGEEF-AVILPNTEIEGAISVAQTIRQAVYDLIIPH 831

Query: 206 SQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV--VC 257
           +Q ++       +T+S G+A     C   P   +I  AD++LY+AK+ GR+RV  VC
Sbjct: 832 AQSSVCD----RVTVSLGVASIVPNCETSP-QDLINAADKSLYIAKQQGRDRVHTVC 883


>gi|307295045|ref|ZP_07574887.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingobium chlorophenolicum L-1]
 gi|306879519|gb|EFN10737.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingobium chlorophenolicum L-1]
          Length = 868

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 95/177 (53%), Gaps = 13/177 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNE--KLSIVFFDIDY 138
           SG+ L E+  S   +++L++ D L+GL N    + SL     G   +    +++  D+D 
Sbjct: 326 SGTDLTEMRRSQAEVTRLAQYDSLTGLANRVQMMRSLEQAVAGKRGQPRDCTLMMLDLDR 385

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND  GHP GD ++  +S+++  V G    VGR GG+EF     G  ++   +L + 
Sbjct: 386 FKIVNDTLGHPAGDALLRQVSERIQRVVGDKGLVGRQGGDEFKILLPGRPDK--IMLDHL 443

Query: 199 LRKIIEN-SQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGR 252
            R II + SQ  +  G ++ I +S GI+  C ++ ++   +I  AD ALY AK  GR
Sbjct: 444 ARAIITDVSQPYLVEGTAVVIGVSIGIS-FCPQDGVTAEELIRNADLALYAAKGGGR 499


>gi|238756942|ref|ZP_04618130.1| Diguanylate cyclase [Yersinia aldovae ATCC 35236]
 gi|238704772|gb|EEP97301.1| Diguanylate cyclase [Yersinia aldovae ATCC 35236]
          Length = 357

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 3/164 (1%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +Y  +   + ID L+ L N ++    ++++ +  +   ++  DID+FK IND +GH  GD
Sbjct: 171 TYFTMKDRANIDKLTQLNNRASADYRLATIHNRRQACGLMILDIDHFKSINDTYGHDCGD 230

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  +   L        F+GR GGEEF         Q    +A  +R+ +E+  + +  
Sbjct: 231 IVLTTVGALLSHAVRDEDFIGRYGGEEFIVITRSYDPQTIKSVAERIRERVESLDVLLPD 290

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  I  TIS G +       +   +   D+ALY AK+ GRN+VV
Sbjct: 291 GRKIKATISIGASLYLPGMSMLKALKMTDEALYQAKRQGRNQVV 334


>gi|134096457|ref|YP_001101532.1| putative GGDEF family protein [Herminiimonas arsenicoxydans]
          Length = 328

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 90/190 (47%), Gaps = 29/190 (15%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------------NEKLS---------I 131
           ++ +Y  +   S  D L+GLLN   F                   NE+           +
Sbjct: 119 VYRNYQSLLDYSERDSLTGLLNRKTFDEKFARMVNAKPADSAPHGNEERRHHTDVKSQWL 178

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              DID+FK++ND FGH  GD+V+  +++ L   F     V R GGEEF      ++  +
Sbjct: 179 AVIDIDHFKRVNDVFGHLYGDEVLILVANVLRASFRAQDRVFRFGGEEFVILLRSTTLAD 238

Query: 192 AAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           A ++    R+ IE+        P +  IT+S G A   H+ P+ TI+  ADQALY AK  
Sbjct: 239 AQMVFERFRENIEHYAF-----PQVGKITVSIGFASIGHETPV-TILGHADQALYYAKDH 292

Query: 251 GRNRVVCFSD 260
           GRN+ VC+ D
Sbjct: 293 GRNQ-VCYYD 301


>gi|117620507|ref|YP_855273.1| diguanylate cyclase/phosphodiesterase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561914|gb|ABK38862.1| diguanylate cyclase/phosphodiesterase domain 2 [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 334

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 5/157 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            +++QL+  D L+GLLN +A         E  +I F D+D FKQ+NDN GH  GD+++  
Sbjct: 153 QQLAQLAHRDPLTGLLNRTALQRQFPQ--EYQAICFIDLDDFKQVNDNLGHRAGDELLIA 210

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
           L+ +L       + +GRLGG+EF       S +   + LA      I ++   + +G   
Sbjct: 211 LTRRLRDCCEEGVKIGRLGGDEFVLLLPWTSDDPRTSHLARQCINAI-STPFELPNG-DA 268

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            + +S GIA    ++  ST + RADQA+Y  K+SG+ 
Sbjct: 269 SVGLSMGIAAIRPQDDFSTALARADQAMYRVKRSGKQ 305


>gi|94263690|ref|ZP_01287498.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455889|gb|EAT06048.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 303

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 13/162 (8%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+G+ N   F        S      + LS++  DID+FK  NDN+GH  GD  +  +
Sbjct: 139 LDGLTGIANRRNFDLALEREWSRAQRSAQPLSLLLLDIDFFKPYNDNYGHGPGDDTLRRV 198

Query: 159 SDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI 216
           +  L      P     R GGEEF      +  + A  +A ++R+ I    I +  S  + 
Sbjct: 199 ATGLQQSLSRPADLAARYGGEEFVCLLPETDREGAQKMAEEVRRTIAGLAIPHAHSQVAD 258

Query: 217 HITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           HIT+S G   IA   +  P + ++  ADQALY AK+SGRNRV
Sbjct: 259 HITVSVGAASIAPNGNGNP-AQLLESADQALYQAKESGRNRV 299


>gi|218676105|ref|YP_002394924.1| GGDEF family protein [Vibrio splendidus LGP32]
 gi|218324373|emb|CAV25746.1| GGDEF family protein [Vibrio splendidus LGP32]
          Length = 345

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 81/155 (52%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D  + L N  +F   I +L    + L ++  DID+FK  ND +GH  GD V+  ++ +L 
Sbjct: 189 DSTTTLYNRRSFDRDIETLCEAKQPLCLILLDIDHFKNFNDTYGHLFGDMVLKGIARKLK 248

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221
            +    +   R GGEEFA      S + A  LA+  R+ +E   I +  SG  +  IT S
Sbjct: 249 QMCREGISAYRFGGEEFAIIVPNKSLRIARQLADTNRRSLEKLSIKDRRSGQQVGSITAS 308

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+AE    E   ++I RAD+ LY AK  GRNRV+
Sbjct: 309 FGVAELEPGESAQSLIERADKLLYEAKSLGRNRVM 343


>gi|89093543|ref|ZP_01166491.1| PAS:GGDEF protein [Oceanospirillum sp. MED92]
 gi|89082233|gb|EAR61457.1| PAS:GGDEF protein [Oceanospirillum sp. MED92]
          Length = 438

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 83/170 (48%), Gaps = 10/170 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSA----FISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           EL     ++  ++  D L+G+ N  +        L   N  +SI+  D+D+FK IND +G
Sbjct: 268 ELKEKNRQLKHMAMHDELTGIANRRSAKLYLDELLSPTNPLISILMIDVDHFKNINDTWG 327

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+V+  L  +L         + R GGEEF      +    A  +A  LR ++E S 
Sbjct: 328 HSEGDQVLQGLVAELNTYLRAADMLARWGGEEFICILPDTGVSAAESVAEKLRSVVEKSL 387

Query: 208 INISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  ++     +TIS G+A     +  I  ++  AD ALY AK  GRNRVV
Sbjct: 388 LGKAT-----VTISIGVASTEFGQMQIDQLLRCADHALYAAKSDGRNRVV 432


>gi|323968371|gb|EGB63778.1| diguanylate cyclase domain-containing protein [Escherichia coli
           M863]
 gi|327253087|gb|EGE64741.1| cellulose synthesis regulatory protein [Escherichia coli STEC_7v]
          Length = 564

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 96/201 (47%), Gaps = 19/201 (9%)

Query: 74  ISITISLLLG----------YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL- 122
           ISI ++LL            Y+   ++  +++  + +   +  D L+ L N  A      
Sbjct: 358 ISIALTLLWALFTSMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTHLYNRGALFEKAR 417

Query: 123 ------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                  ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+G
Sbjct: 418 QLAKLCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRALDVAGRVG 477

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPIS 234
           GEEF     G++  +AA +A  +R  +   ++ I+   +I I+ S G+  +E        
Sbjct: 478 GEEFCVILPGANLAQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFE 537

Query: 235 TIIYRADQALYVAKKSGRNRV 255
            +   AD+ LY+AK++GRNRV
Sbjct: 538 QLQSLADRRLYLAKQAGRNRV 558


>gi|269968236|ref|ZP_06182265.1| GGDEF family protein [Vibrio alginolyticus 40B]
 gi|269827159|gb|EEZ81464.1| GGDEF family protein [Vibrio alginolyticus 40B]
          Length = 466

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 89/166 (53%), Gaps = 20/166 (12%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDK 153
           ++L+  D L+G +N  A    L   + ++       SI++ D+D FK++ND FGH +GD 
Sbjct: 296 AELAHRDALTGAMNRYAVQHWLEQQSRQVRWGHNTFSILYLDLDKFKKVNDKFGHQMGDD 355

Query: 154 VIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           ++     + V+V  T ++      R GGEEF      ++ ++A   A  +RK +E+    
Sbjct: 356 ILR----EFVMVVATSIYSDDRLVRWGGEEFVVFCPDTNIEQALEKAEMIRKNVEDHL-- 409

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              G S  +T S G+A+    E +S  + RAD+ LY AK++GRNRV
Sbjct: 410 WVHGES--LTCSIGVAQ-MQNERVSETMARADEVLYQAKRNGRNRV 452


>gi|264679145|ref|YP_003279052.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262209658|gb|ACY33756.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 522

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 12/180 (6%)

Query: 90  LKELFISYN-RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           ++E  +  N  + +L+  D L+GL N   F       +         LS++  D+D+FK 
Sbjct: 343 VREKLLDANLELERLATQDSLTGLANRRRFDEVLQLEVRRAARDGTVLSLLLIDLDHFKG 402

Query: 142 INDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND +GH  GD+ +  +S QL +    +     R GGEE A     ++ + A  +A +L 
Sbjct: 403 FNDRYGHVAGDECLKAVSRQLELSAKRSGDLAARYGGEELAIILPNTALEGAMRVAEELL 462

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVC 257
           K I    I   S    H+T+S G A    +  +++   ++  ADQALY AK +GRNR  C
Sbjct: 463 KCIRGLDIAHESSQFGHVTVSVGAASMQGRHGLASPLDLVEAADQALYRAKAAGRNRAEC 522


>gi|238792557|ref|ZP_04636190.1| Diguanylate cyclase [Yersinia intermedia ATCC 29909]
 gi|238728192|gb|EEQ19713.1| Diguanylate cyclase [Yersinia intermedia ATCC 29909]
          Length = 213

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 7/166 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           F   NR++    ID L+ L N S+    ++++ +  +   ++  D+D+FK +ND +GH  
Sbjct: 29  FSMKNRVN----IDKLTQLNNRSSIDYRLTAIHNSRQACGLLILDLDHFKSVNDTYGHNG 84

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD ++  +   L        FVGR GGEEF         Q    +A  +R+ +EN  + +
Sbjct: 85  GDLLLTEVGKLLTSSIRDEDFVGRYGGEEFIVITRRHEPQTIKAVAERIRQQVENLAVVL 144

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             G  I  TIS G +       +   +   D+ALY AKK GRN+VV
Sbjct: 145 PDGRKIKATISIGASLYLPGMSMLKALKMTDEALYQAKKQGRNQVV 190


>gi|220905025|ref|YP_002480337.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869324|gb|ACL49659.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 1032

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 99/202 (49%), Gaps = 14/202 (6%)

Query: 67  ENLSLVIISITISLLLGYISG---SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           +++++ +    I LL+G +       ++EL    + +  ++  D L+G  N  AF     
Sbjct: 92  KSVTIALSIFAIVLLVGKLKSREEKNIQELKRYGDALVHMATTDKLTGASNRHAFFKKGA 151

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
           +       +N  +S++F DID+FKQ+ND +GH  GD V+  +S  +           R G
Sbjct: 152 ALHEHSKKFNMPVSVLFIDIDHFKQVNDLYGHAFGDAVLERISGAIKRCLRGSDINCRYG 211

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST- 235
           GEEF      +    A ++A+ +  +++   I     P + +++S G++      P S  
Sbjct: 212 GEEFVVLLAHADSDAAHLVAHRIMNMVQC--IRFQEYPDLRLSVSIGLSSMQPAAPRSLE 269

Query: 236 -IIYRADQALYVAKKSGRNRVV 256
            +I  AD A+Y AK+ GRNRVV
Sbjct: 270 HLIRSADSAMYQAKQDGRNRVV 291



 Score = 40.4 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 8/91 (8%)

Query: 95  ISYNRI-SQLSRIDCLSGLLNHSAFISSLGSYNE--KLSIVFFDIDYFKQINDNFGHPVG 151
           I+Y ++  +LS  D L+GL N ++++  +    E     I +  I+  K+IN+ FG   G
Sbjct: 610 INYEKLLVKLSFEDSLTGLHNRNSYLQGISGAKEVQNAGIAYLSINEMKRINNVFGQAHG 669

Query: 152 DKVIAFLSDQLVVVF--GTPMFVGRLGGEEF 180
           D+++A  +  L   F  GT     R+GG+EF
Sbjct: 670 DRLLAECAHCLKNAFPSGTAY---RVGGDEF 697


>gi|153825270|ref|ZP_01977937.1| GGDEF family protein [Vibrio cholerae MZO-2]
 gi|149741098|gb|EDM55157.1| GGDEF family protein [Vibrio cholerae MZO-2]
          Length = 392

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 102/198 (51%), Gaps = 18/198 (9%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           I+V+NL   II  T+ +L       + +E  I ++R+  +   D L+G  N   F   + 
Sbjct: 201 IVVQNLFFFIILGTMLMLF------LFEE--IEWHRLRSIQ--DELTGAFNRRHFKEQVQ 250

Query: 124 SYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
              ++      +   DID+FKQIND++GH +GD VI ++   L  +  T   V R GGEE
Sbjct: 251 QKLKQSKQKSIVALVDIDHFKQINDSYGHDIGDSVITYVVRHLESLALTECLVARYGGEE 310

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIY 238
           FA  A  +  +  +   + +R  I +   ++   P  + ++I A I E  H+     ++ 
Sbjct: 311 FAIFARENDFERVSQALDSVRDAI-SVGFHVEQQPLKVSVSIGAVIFESSHE--YGEVLR 367

Query: 239 RADQALYVAKKSGRNRVV 256
           +AD+ALY AK+ GRNR++
Sbjct: 368 QADKALYQAKQQGRNRIM 385


>gi|149183790|ref|ZP_01862192.1| hypothetical protein BSG1_15905 [Bacillus sp. SG-1]
 gi|148848508|gb|EDL62756.1| hypothetical protein BSG1_15905 [Bacillus sp. SG-1]
          Length = 539

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 87/187 (46%), Gaps = 16/187 (8%)

Query: 89  ILKELFISYNR-------ISQLSRIDCLSGLLN----HSAF---ISSLGSYNEKLSIVFF 134
           IL+ELFI  NR       +  L  +D L+ L N    HS+F    +      ++LSI F 
Sbjct: 215 ILEELFIRVNRQIERKEFVDHLILVDELTRLYNRKYLHSSFSQLCAKQWEEEQELSIAFL 274

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+DYFKQ+ND +GH  GD V+   SD +           R GGEEF   +  +S ++   
Sbjct: 275 DLDYFKQVNDQYGHLTGDIVLKEFSDFVKQRLSPEDSFIRYGGEEFVLLSPDTSAEKCKE 334

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGR 252
             N++             G     T S+G+ +    E  S   +   AD ALY +K++GR
Sbjct: 335 RLNNILAAFSEYVFKAEEGEEFTCTFSSGVVDVDASESTSLSYWLDMADLALYQSKENGR 394

Query: 253 NRVVCFS 259
           N+V  F 
Sbjct: 395 NQVTLFD 401


>gi|34499542|ref|NP_903757.1| hypothetical protein CV_4087 [Chromobacterium violaceum ATCC 12472]
 gi|34105392|gb|AAQ61747.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 249

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 11/194 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128
            ++++S T++L + + +   L+E       + + +  D ++GL N      +L    E+ 
Sbjct: 52  EVLLLSFTMALSMTWFAVRRLREARQLLKALRRQAERDDITGLANRRRANQALQRETERS 111

Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                  S++  D+D+FK IND+ GH  GD V+      L         V R GGEEF  
Sbjct: 112 YRSGRPYSVLLLDLDHFKHINDSHGHLAGDMVLQRFGQALRQRARQLDTVARWGGEEFII 171

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
               + +  A  LA ++ +++  +      G    +T S G+A     +   ++++RAD 
Sbjct: 172 ICPETEQAGALTLAENIGQLLRETDF----GAVARVTASIGVATLSDDDTPDSLVHRADM 227

Query: 243 ALYVAKKSGRNRVV 256
            LY AK++GR+RVV
Sbjct: 228 HLYAAKQAGRDRVV 241


>gi|94495919|ref|ZP_01302498.1| hypothetical protein SKA58_15092 [Sphingomonas sp. SKA58]
 gi|94424611|gb|EAT09633.1| hypothetical protein SKA58_15092 [Sphingomonas sp. SKA58]
          Length = 565

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 8/161 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           + Q++  D L+G  +  AF+  L       +   + S++  D+D+FK +ND +GH  GD+
Sbjct: 400 LQQVAARDALTGADSRRAFLDKLDAEMLRAADGARSSLLLMDLDHFKSVNDRYGHGGGDR 459

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS-QINISS 212
           V+      +         +GRLGGEEFA   +    + AA L + LR+ +    ++N   
Sbjct: 460 VLTGFVQAIQPELRDGDSIGRLGGEEFAILLVDCDRRAAAQLCDRLRQRLSAPIRVN-DK 518

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             +I +T SAG+ +       S ++  AD+ALY AK SGRN
Sbjct: 519 DDTIAVTFSAGLVQLDGGSTRSAMLEAADRALYDAKHSGRN 559


>gi|66043359|ref|YP_233200.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63254066|gb|AAY35162.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 335

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 9/167 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFIS------SLGSYN-EKLSIVFFDIDYFKQINDNFGHPV 150
           N + +L+  D L+   N   F         L   N   L+ +  DID FK +ND +GH  
Sbjct: 168 NELQRLATTDVLTQSSNRRHFFECAQREFELARLNGTPLAFLLLDIDDFKLVNDTYGHQE 227

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  +++            GR+GGEEFAA   G +   A  +A  L++ I+      
Sbjct: 228 GDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCAPDMAMQIAERLQREIQRQNFQ- 286

Query: 211 SSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
           S+G +  IT S G+      +P + T+  RAD A+Y AK+ G+N++V
Sbjct: 287 SAGTTFSITASQGLTNLGPDDPSLETLYGRADAAMYQAKRQGKNQIV 333


>gi|323706164|ref|ZP_08117732.1| diguanylate cyclase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534457|gb|EGB24240.1| diguanylate cyclase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 207

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 101/204 (49%), Gaps = 20/204 (9%)

Query: 71  LVIISITISLLLGYISGSI---LKELFIS-----YNRI-SQLSRIDCLSGLLNHSAFISS 121
           ++I+S  I+L+  Y + SI   L + FI      Y  +    +RI  L+ L N   F   
Sbjct: 8   VIILSFLITLITYYTANSIVFILIQFFICITISIYTYVLKNNARIGKLTSLYNRKYFDYI 67

Query: 122 LGSYNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
           L    ++L      +++  D+D FK IND +GH  GD V+A L+D L           R 
Sbjct: 68  LSDKLKRLRGRANLALLICDVDNFKLINDTYGHVTGDAVLAELADILKANIRKSDTAYRY 127

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           GGEEFA     ++  EA ++A  ++K +E          ++ +T+S G+A   +K     
Sbjct: 128 GGEEFAIIMPNTNYNEAEVVAMRIKKAVEKHFFK----TNVTVTVSVGVAVTNYKVSAID 183

Query: 236 IIYRADQALYVAKKSGRNRVVCFS 259
           I+  AD+ALY+AKK  +N VVC  
Sbjct: 184 IVIIADKALYIAKKQ-KNTVVCLQ 206


>gi|316934609|ref|YP_004109591.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
 gi|315602323|gb|ADU44858.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
          Length = 406

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 15/167 (8%)

Query: 101 SQLSRIDCLSGLLNH---SAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGD- 152
           ++++R D L+GL N       I+ L +        +S++  D D+FK +ND +GH +GD 
Sbjct: 221 AEVARRDPLTGLPNRLKLERAIADLWAGGRDAAAMVSVIMVDFDHFKSLNDRYGHSIGDL 280

Query: 153 ---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
              +V A +S +L           R GGEEF     G    +A  LA  +R+ +E++   
Sbjct: 281 CLRQVAALISAELP---ADDSLAVRYGGEEFLLVLPGMPSSDAVRLAERIRRKVEDASAG 337

Query: 210 ISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRV 255
            + G  + IT S G+A     +  S ++I  AD+ALYVAK++GRNRV
Sbjct: 338 NAFGAELAITASFGVAGALISDLSSESLIAAADKALYVAKRNGRNRV 384


>gi|209546934|ref|YP_002278852.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209538178|gb|ACI58112.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 730

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 19/175 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL +S  +I Q++  D L+ L N S F       I+S GS  ++  ++  DID+FK +ND
Sbjct: 281 ELNVSRQKIHQMAFYDPLTSLPNRSLFNDRLRQMITSAGSRGQRAGLMLIDIDHFKVVND 340

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GHPVGD ++   + +L         V RLGG+EFA      S+       +DL +I  
Sbjct: 341 TMGHPVGDDLLCQAAARLNASVRDHDTVARLGGDEFAILLPDISQ------GDDLGRIAN 394

Query: 205 N-----SQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253
           N      +  +  G  + ++ S GIA         + ++  AD A+Y+AK+SGRN
Sbjct: 395 NILDKFRERFLLDGQEVFVSCSVGIALYPDDSADANDLVKYADSAMYLAKRSGRN 449


>gi|254457534|ref|ZP_05070962.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207086326|gb|EDZ63610.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 245

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQ 141
           SI KEL+   N+    +  D L+GL N           +SL   +   ++VF DID FK 
Sbjct: 68  SIKKELYQVNNKAVTYAFKDALTGLNNRHYLNNFLENFTSLRKEDTDFAVVFIDIDRFKL 127

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD ++  L+  L  +      + R GGEEF        +Q+       +R+
Sbjct: 128 INDSLGHSTGDCILKSLALSLQSLIRPGDTLCRYGGEEFVIIFTEIYKQDVLRKVEQIRE 187

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            IE             ITISAGI+     + I+ ++  +D+ALY+AK +GRN V  F+
Sbjct: 188 SIERRTFECKEQK---ITISAGISFGLRDDDINEVMEHSDKALYMAKDAGRNCVKVFN 242


>gi|157962687|ref|YP_001502721.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157847687|gb|ABV88186.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
          Length = 293

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 99/222 (44%), Gaps = 22/222 (9%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITI--------SLLLGYISGSILKELF--ISYN 98
           + F+ G T  Y  E  L  +   V I+  +        +L+L  +   +L+ L   I Y 
Sbjct: 70  YQFHWGQTYGYAFEQKLTFSDQQVTINYNLKAALVPSQTLMLNQLKDLVLQPLINAIQYQ 129

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
            +SQ +  D L+ L N   +  SL              S++  D+D FKQ+ND+FGH +G
Sbjct: 130 EMSQQAMYDALTKLGNRHYYQQSLKKEIARAKRNQSSFSLIVLDLDNFKQLNDDFGHQLG 189

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D  +   +D L           R+GG+EF        + EA +L N     I ++ +N  
Sbjct: 190 DSALVEFADMLNATIRDTDQAFRIGGDEFTLLVQADVD-EARVLCNR----ILDALLNHH 244

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
                 ++ S G+ +   K+  S++  RAD ALY AK +GR 
Sbjct: 245 YLEKYQVSTSMGVTQWKDKDTESSLYQRADNALYEAKAAGRQ 286


>gi|153831070|ref|ZP_01983737.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|148873451|gb|EDL71586.1| GGDEF family protein [Vibrio cholerae 623-39]
          Length = 372

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 16/180 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L+    ++  LS  D L+GL N    +  L           +    V  DID FK +N
Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH VGDKV+  +++ L   F +   V RLGG+EF      +       +A+ + + I
Sbjct: 253 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETDTAGGVYIADQVCRAI 312

Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   I++ +      ++S G+A      + H E    ++  ADQA+Y+AK SG+NRV  F
Sbjct: 313 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHE----LLRAADQAVYLAKNSGKNRVCAF 368


>gi|120610099|ref|YP_969777.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
 gi|120588563|gb|ABM32003.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
          Length = 516

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 79/171 (46%), Gaps = 16/171 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
           +R S  +R D L+G LN      +L          +  L +   D+D FK IND  GH  
Sbjct: 350 DRASAQARHDPLTGSLNRKGLDEALEREVARALRNDAPLCVALLDLDNFKAINDRLGHTG 409

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENS 206
           GD+ +  L+     V      + R GGEEF       AL    +  A L  +L      +
Sbjct: 410 GDEALKHLAGVTREVMRPQDQLARYGGEEFVIILPDTALAQGVEAMARLQREL-----TT 464

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  +     + IT SAG+A+   +E     I RADQ +Y+AK+SG+NRV+ 
Sbjct: 465 RYFLKDQEKVLITFSAGVAQVAPQETTVEAIRRADQGMYLAKRSGKNRVMA 515


>gi|71275659|ref|ZP_00651944.1| GGDEF [Xylella fastidiosa Dixon]
 gi|71897797|ref|ZP_00680023.1| GGDEF [Xylella fastidiosa Ann-1]
 gi|71163550|gb|EAO13267.1| GGDEF [Xylella fastidiosa Dixon]
 gi|71732352|gb|EAO34406.1| GGDEF [Xylella fastidiosa Ann-1]
          Length = 554

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 20/163 (12%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+G L   A        I         LS+ F DID+FK+IND +GH  GD  +  +
Sbjct: 395 VDGLTGALTRVAIERRLERDIDDARQMGTPLSVAFIDIDHFKRINDEYGHAAGDACLRQV 454

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP---- 214
             ++         +GR GG+E  A   G+    A       R++ E  ++ +SS P    
Sbjct: 455 VQRVRGWLRASDALGRHGGDELIAILPGADLAAA-------RRVAEGIRVAVSSQPFQFE 507

Query: 215 --SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              +  T+S G+A     E I  ++ RAD  LY +K +GR+RV
Sbjct: 508 CTRLRCTLSLGVASWLPDESIEALLQRADNGLYASKAAGRDRV 550


>gi|330976967|gb|EGH76987.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 664

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 97/187 (51%), Gaps = 18/187 (9%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEK----LSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++ S    NE+    L +
Sbjct: 206 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 262

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189
           +F D+D FKQIND+ GH  GD+V+ ++++Q          + R+GG+EF      L   E
Sbjct: 263 LFMDLDGFKQINDSLGHEAGDQVLLWVAEQFKATMRPYDVLARIGGDEFTVVIDGLDYPE 322

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247
           Q A I    + ++    Q++   G  I +  S GIA    C    +  ++  AD A+Y A
Sbjct: 323 QAAKIAEKLIERVSGRRQVD---GVEITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 378

Query: 248 KKSGRNR 254
           K++GR +
Sbjct: 379 KRAGRQQ 385


>gi|317491487|ref|ZP_07949923.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316921034|gb|EFV42357.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 577

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 79/165 (47%), Gaps = 3/165 (1%)

Query: 98  NRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           N + + S  D L+ + N   F    S + S    L+    DID FK +ND +GH VGD  
Sbjct: 398 NELLEASSTDPLTNIYNRRKFFNQCSQIKSAEYPLAFCLIDIDNFKNLNDRYGHDVGDLA 457

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   S  L           R GGEEFA     +   +A  + + +R   E   I I + P
Sbjct: 458 LIAFSQLLTQSLPKDTVYCRYGGEEFAILLKYTDVPQAMQIIDSVRLDTELLHITIPNKP 517

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +  TIS G+A     + I+  I +AD+ALY +KK G+N+V  +S
Sbjct: 518 GVGFTISCGLARLDDYKNINHSIKQADEALYFSKKRGKNQVSFYS 562


>gi|312960693|ref|ZP_07775199.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           fluorescens WH6]
 gi|311285219|gb|EFQ63794.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           fluorescens WH6]
          Length = 352

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 83/186 (44%), Gaps = 12/186 (6%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSI 131
            L LG+I       L      +  LSR D LSGLLNH A+   L           +   I
Sbjct: 159 PLALGWICYRQAVNLARHKRELMTLSRTDSLSGLLNHGAWKDHLEIEFQRCRRDQQGAVI 218

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              DID+FK IND +GH  GD V+  L   L          GR GG+EF     G     
Sbjct: 219 ALIDIDHFKLINDTYGHVTGDIVLRQLGKVLRQNLRATDLAGRYGGDEFCVILPGMPLNH 278

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKK 249
           A  +   LR     + +  +  P++  ++S G+A  +  H +  S  +  AD ALY AK 
Sbjct: 279 ATDVMEALRD--RFNALAYAQDPALRASLSIGLAPYQPGHADSTS-WLNDADLALYEAKS 335

Query: 250 SGRNRV 255
           SGRNRV
Sbjct: 336 SGRNRV 341


>gi|222087155|ref|YP_002545690.1| GGDEF family protein [Agrobacterium radiobacter K84]
 gi|221724603|gb|ACM27759.1| GGDEF family protein [Agrobacterium radiobacter K84]
          Length = 738

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 107/227 (47%), Gaps = 37/227 (16%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           G T +     +++  L LV +   + L+LG ++G   + L        Q S  D LSGLL
Sbjct: 257 GDTSYQQARPLVLGALGLVGMFFVVLLILGSLAG---RRLRAEEALARQGSLRDRLSGLL 313

Query: 114 NHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N           + S  +    + +++ D+D FK+IND +GH  GD++I  ++  L V+ 
Sbjct: 314 NREGLRLDVDRLVDSARADGSNVLLLYLDLDGFKEINDAYGHGTGDQLIRSVAAGLNVLI 373

Query: 167 GTPMFVGRLGGEEFA----------AAALGSSEQEAAILANDL----RKIIENSQINISS 212
                + RLGG+EFA          A AL  +EQ    L+  L    R I+  + I I+S
Sbjct: 374 PPNATLARLGGDEFAIAFPSRELNHAPALRLAEQVLDFLSEPLEIGRRVIVVGASIGIAS 433

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            P            R  +E    ++ RAD A+Y AK++GR R++C+ 
Sbjct: 434 SPE----------GRIDRE---ELVRRADLAMYKAKEAGRARMICYE 467


>gi|197336762|ref|YP_002158646.1| sensory box/ggdef family protein [Vibrio fischeri MJ11]
 gi|197314014|gb|ACH63463.1| sensory box/ggdef family protein [Vibrio fischeri MJ11]
          Length = 509

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 105/215 (48%), Gaps = 13/215 (6%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           P + +E I    + L+   I +S ++  +   +  +  I +N I +L+  D L+GL+N  
Sbjct: 298 PKWSIERISSGEVLLIGCFILLSFIVSLVITQLQLKKKIDHNEIKKLAHHDSLTGLINRG 357

Query: 117 AF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            F       +        KL++++ D+D FK +NDNFGH  GD  +  ++  L   F   
Sbjct: 358 YFKKLFHWKMQKARKNETKLALIYIDLDGFKDLNDNFGHSAGDLALKAVARNLYSTFAEN 417

Query: 170 MFVGRLGGEEFAAAALGSSEQEA--AILANDLRKIIENSQINISSGPSIHITISAGIA-E 226
            +V RLGG+EFA       ++E   A++   L     N+ + +   P   ++ S G+A  
Sbjct: 418 SYVARLGGDEFAVLIHTVIDEEEIFALVEEFLES--SNTPLMLEDIP-YQLSTSIGLAFF 474

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             H   I+ +++ AD A+Y  K+SG+N    F ++
Sbjct: 475 PEHGRSINELMHNADAAMYDIKRSGKNGFKVFENL 509


>gi|24374845|ref|NP_718888.1| GGDEF family protein [Shewanella oneidensis MR-1]
 gi|24349537|gb|AAN56332.1|AE015771_2 GGDEF family protein [Shewanella oneidensis MR-1]
          Length = 574

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 15/175 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  ++  D L+G  N           +S    +N  LSIV FD+D FK+ ND +GH  G
Sbjct: 400 QVKTMAETDGLTGCYNRRYLDNQILKELSYANDHNMPLSIVMFDLDNFKEFNDQYGHVNG 459

Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK-IIENSQIN 209
           D+ +  + +    +   P   + R GGEEF      S  ++A  +A  LR+ +I+   I+
Sbjct: 460 DQCLRQIVNAAKSILQRPTDILARYGGEEFMLLLPSSHIEDAYKIAERLRETVIDLHIIH 519

Query: 210 ISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVVCFSD 260
             S  S  +TIS G+A  C + P    ++ +I   D+ALY AK +GRNR   F D
Sbjct: 520 QGSSHSGIVTISLGVA--CWQPPESFDVNKLISHVDEALYRAKLAGRNRTEVFID 572


>gi|315123486|ref|YP_004065492.1| hypothetical protein PSM_B0546 [Pseudoalteromonas sp. SM9913]
 gi|315017246|gb|ADT70583.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 502

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 79/161 (49%), Gaps = 9/161 (5%)

Query: 106 IDCLSGLLNHSAFIS----SLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+ L N +AF       +  +NE+   +++V  D+D+FK IND FGH  GD  +  +
Sbjct: 343 LDSLTKLPNRAAFDERYNHEINLFNEQPSDITLVVIDVDHFKSINDRFGHTAGDITLQVI 402

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L        F+ R GGEEF      +S + A    N LR+ I+           I I
Sbjct: 403 AKALQKSIRQSDFIARYGGEEFVLLMPRTSLENATAHLNKLRQSIKKIPFKF-KDKQIEI 461

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           T+S G  +    +       RADQALY AK SGR+R +C S
Sbjct: 462 TVSLGATQFKEGDTPLKAFDRADQALYDAKNSGRDR-LCIS 501


>gi|327395329|dbj|BAK12751.1| diguanylate cyclase/phosphodiesterase YciR [Pantoea ananatis
           AJ13355]
          Length = 724

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 10/179 (5%)

Query: 87  GSILKELFISYN---RISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFK 140
           G I++++ + Y    R+ +L+ +D L+ L + SAF++ L    E     +++  D+D FK
Sbjct: 287 GMIIRDVTLRYESEARLCELASLDMLTRLASRSAFMTQLSKLTESGVPYTLLMTDLDSFK 346

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND  GH  GD ++  +++Q+  V    +   RLGG+EF    L     EA  +A  L 
Sbjct: 347 DVNDTRGHAAGDALLCHVAEQIRAVCTQAIAAARLGGDEF-IVLLPCGSDEAMKIAQQLT 405

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             I+     + S  +I +  S G+A    H    S+++  AD ALY AK SG+ + V F
Sbjct: 406 AAIQTPFHYMDS--TIAVGASTGVASFPHHAADTSSVMSAADLALYRAKASGKGQSVLF 462


>gi|296103575|ref|YP_003613721.1| diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058034|gb|ADF62772.1| diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 566

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 70/131 (53%), Gaps = 6/131 (4%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S+V  D+D FK IND FGH  GDKV++  +  +          GR+GGEEF     G   
Sbjct: 431 SVVQIDLDNFKSINDRFGHQAGDKVLSHAAGLIASALRKNDVAGRVGGEEFCVVLPGIGL 490

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALY 245
           +EA  +A  +R  I++ +I +    ++ I+ S G++  C +E        +   AD  LY
Sbjct: 491 EEARAVAERIRSRIDSKEILVKKSTTLRISASMGVS--CAQEKGNYDFEQLQSIADARLY 548

Query: 246 VAKKSGRNRVV 256
           +AK+ GRN+VV
Sbjct: 549 LAKQRGRNQVV 559


>gi|153828796|ref|ZP_01981463.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|148875749|gb|EDL73884.1| GGDEF family protein [Vibrio cholerae 623-39]
          Length = 392

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 102/198 (51%), Gaps = 18/198 (9%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           I+V+NL   II  T+ +L       + +E  I ++R+  +   D L+G  N   F   + 
Sbjct: 201 IVVQNLFFFIILGTMLMLF------LFEE--IEWHRLRSIQ--DELTGAFNRRHFKEQVQ 250

Query: 124 SYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
              ++      +   DID+FKQIND++GH +GD VI ++   L  +  T   V R GGEE
Sbjct: 251 QKLKQSKQKSMVALVDIDHFKQINDSYGHDIGDSVITYVVRHLESLALTECLVARYGGEE 310

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIY 238
           FA  A  +  +  +   + +R  I +   ++   P  + ++I A I E  H+     ++ 
Sbjct: 311 FAIFARENDFERVSQALDSVRDAI-SVGFHVEQQPLKVSVSIGAVIFESSHE--YGEVLR 367

Query: 239 RADQALYVAKKSGRNRVV 256
           +AD+ALY AK+ GRNR++
Sbjct: 368 QADKALYQAKQQGRNRIM 385


>gi|144897557|emb|CAM74421.1| GGDEF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 452

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 15/162 (9%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD--- 152
           ++  D L+GL N   F       I     Y+  L+++  D+D+FK +ND +GH VGD   
Sbjct: 289 MASTDPLTGLTNRRRFAERADEEIRRAQRYDVALTLIVGDVDHFKAVNDGWGHDVGDLAL 348

Query: 153 -KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
             V +   DQL  V        R+GGEEF A    +   +A  +A  +R  I  + ++  
Sbjct: 349 RHVASIWRDQLRDVD----LSARIGGEEFVALLPETPLPQAEGVAERIRAAIAATPLSTE 404

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
               +H+TIS GIA     E ++ ++ RADQA+Y AK SGRN
Sbjct: 405 GVAVMHLTISLGIAALLPGETLTDLMRRADQAMYRAKHSGRN 446


>gi|86361180|ref|YP_473067.1| putative kinase/esterase protein [Rhizobium etli CFN 42]
 gi|86285282|gb|ABC94340.1| putative kinase/esterase protein [Rhizobium etli CFN 42]
          Length = 588

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 9/159 (5%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+GLLN  +F   +S L      K++++  D+D+FK+IND FGH VGD V++ +S+ L
Sbjct: 162 DHLTGLLNRRSFDFALSELARQESVKVALLHIDVDHFKEINDRFGHAVGDLVLSHVSNIL 221

Query: 163 VVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +       F  RLGG+EFA        ++  A+L +  R++   S + +     I +  S
Sbjct: 222 LEAISAGDFAARLGGDEFAVVITEDECDRTIAVLDHIQRRL--GSPLPVGDQTLI-VRCS 278

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            G+A     +  + ++ ++D ALY AK++GRNR   FSD
Sbjct: 279 IGVASAMSAD-FARLLSQSDLALYHAKRNGRNRAEIFSD 316


>gi|86358628|ref|YP_470520.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|86282730|gb|ABC91793.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
          Length = 783

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 14/177 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  S +R  + +  D L+GLLN   F       I++  +  ++L+ +F D+D FK IND
Sbjct: 336 ELKASEDRNHRQAITDHLTGLLNRQGFEAVLDNKIAAADAAGQELACLFVDLDRFKWIND 395

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKII 203
           N GH  GD+ +  L ++L           RLGG+EFA       +E+ A  +   +  I 
Sbjct: 396 NMGHAAGDRALIELVERLKTHLAPSDEAARLGGDEFAILLPAKDAEKRAKAMCEQIASIF 455

Query: 204 ENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           E         P +H++ S GI+    H    + ++ ++D A+Y  K+ G+N    F 
Sbjct: 456 ET-----PFAPDMHLSASIGISIYPHHAATAAELLQKSDMAMYAKKRDGKNGAQLFD 507


>gi|107102843|ref|ZP_01366761.1| hypothetical protein PaerPA_01003911 [Pseudomonas aeruginosa PACS2]
          Length = 726

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 100/186 (53%), Gaps = 22/186 (11%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L +L  ++  + Q++R D L+GL N +AF       + +     + L+++F D+D+FK
Sbjct: 272 ALLNQLDHAHASLRQMARYDSLTGLQNRTAFNEVFVQHLENCRLRGKGLAVMFLDLDHFK 331

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL- 199
           +IND+ GH  GD+++  +S+++  V      V R  G+EF   A  + + EA IL+  L 
Sbjct: 332 RINDSLGHDSGDQLLKIVSERIRSVLRDSDVVARFAGDEFCVLADLTQDHEAHILSQRLM 391

Query: 200 RKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRN 253
           +K+ E   ++   G ++ +T S G++      E+C +     ++  A  AL+ +K  GRN
Sbjct: 392 QKMKEPIALD---GRTLVMTASVGVSLYPNDGEQCEE-----LLKNAGLALHQSKACGRN 443

Query: 254 RVVCFS 259
               FS
Sbjct: 444 NAQFFS 449


>gi|302530995|ref|ZP_07283337.1| predicted protein [Streptomyces sp. AA4]
 gi|302439890|gb|EFL11706.1| predicted protein [Streptomyces sp. AA4]
          Length = 242

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+   N       L      +++   D+D FK +ND +GH +GD+V+  ++D L    
Sbjct: 82  DPLTSSYNRRYLDQRLPELPAAVAVALVDLDRFKSVNDTYGHLLGDRVLCRVADLLQEGL 141

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIA 225
               F  R GGEEFA    G   + A  +A+  R ++  +    +   P + +TIS G+A
Sbjct: 142 PADAFCARYGGEEFALVLPGIDHRGAVRIADAARLRVARHPWSELQ--PGLRVTISVGLA 199

Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                 P    ++RAD  LY AK++GRN+ V F D E 
Sbjct: 200 HGTGSGPRQ--LHRADNLLYAAKRAGRNK-VAFHDCET 234


>gi|291085296|ref|ZP_06352670.2| developmental regulator MorA [Citrobacter youngae ATCC 29220]
 gi|291071533|gb|EFE09642.1| developmental regulator MorA [Citrobacter youngae ATCC 29220]
          Length = 681

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 93/183 (50%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +G+  E     ++ IV+ D+D FK
Sbjct: 237 SGTDITEERRAQERLRVLANTDSITGLPNRNAIHELIGNAIENAGDTQVGIVYLDLDNFK 296

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S    E  A+ + 
Sbjct: 297 KVNDAYGHMFGDQLLQSVSLAILSCLDDNQLLARFGGDEFIVLATETSQSALEATASRIL 356

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G SI I+++    + C      ++I  AD A+Y AK+ GR +  
Sbjct: 357 TRLRQPFRIGLIEVYTGCSIGISLAPQHGQDCE-----SVIRNADTAMYTAKEGGRGQFC 411

Query: 257 CFS 259
            FS
Sbjct: 412 VFS 414


>gi|271501910|ref|YP_003334936.1| PAS/PAC sensor-containing diguanylate cyclase [Dickeya dadantii
           Ech586]
 gi|270345465|gb|ACZ78230.1| diguanylate cyclase with PAS/PAC sensor [Dickeya dadantii Ech586]
          Length = 483

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 92/187 (49%), Gaps = 13/187 (6%)

Query: 87  GSILK--ELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNE----KLSIVFFDID 137
           GS+L   +L  S   +  L++ D L+G+ N   F      L   +E     LS++  DID
Sbjct: 291 GSMLDITDLKQSETLLQVLAQTDSLTGIANRRHFDERYQQLWRQHESIQMPLSLLMIDID 350

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
            FK+ ND++GH  GD  I  + + L   +  +   +GR GGEEF      +  Q+A  LA
Sbjct: 351 RFKRFNDSYGHSKGDACIKSVVETLAGQLPSSECLLGRYGGEEFTVVLPQTDYQQALALA 410

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY---RADQALYVAKKSGRN 253
              R+ +E+ +I  +  P   +T+S G+A     +  S++      AD ALY AK  GRN
Sbjct: 411 ERCRQAVESMEIPHTKSPQGVVTVSIGVAVARPGDAGSSMTQLSNDADDALYRAKHLGRN 470

Query: 254 RVVCFSD 260
           RV    D
Sbjct: 471 RVEAGPD 477


>gi|255101387|ref|ZP_05330364.1| putative signaling protein [Clostridium difficile QCD-63q42]
          Length = 391

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 110/245 (44%), Gaps = 30/245 (12%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK-ELFIS 96
           F  +VI     FLF     P  G++ I     S ++ +  I+ L  ++S  + +  +F  
Sbjct: 147 FGESVIVFGGCFLFLNLFLP--GIQTIPGNEFSNIVNTFFITSLAIFVSTMLYRNRVFTY 204

Query: 97  YNRI---SQLSRIDCLSGLLNHSAFISSLGSYN-------------------EKLSIVFF 134
           Y+++    Q   I  ++ LLN       L   N                   E ++ +  
Sbjct: 205 YDKLLISQQYEEISHINNLLNDKVMTDDLTKMNNRRYLEDILQKKLISHANQEPITGMMI 264

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEA 192
           DIDYFKQ NDN+GH  GD  +  ++ ++++ F +       R GGEEF       +E EA
Sbjct: 265 DIDYFKQFNDNYGHQKGDYCLQNIA-KVILDFTSSENEHAIRYGGEEFFICIFNCNEAEA 323

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKS 250
            + +  LRKIIE         P   +T+S G+  +  ++ I+    I   D+ALY AK+ 
Sbjct: 324 KLKSECLRKIIECCNFERDDVPLKCVTVSIGVYTKKIEKTITLNEFISNCDKALYTAKEQ 383

Query: 251 GRNRV 255
           GRN V
Sbjct: 384 GRNCV 388


>gi|153000750|ref|YP_001366431.1| PAS/PAC sensor-containing diguanylate cyclase [Shewanella baltica
           OS185]
 gi|151365368|gb|ABS08368.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica OS185]
          Length = 345

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 97/203 (47%), Gaps = 39/203 (19%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGH 148
           +   +++L+  D L+G+ N   F   L    ++LS       +V  DID FK +ND +GH
Sbjct: 138 AQTELNRLALTDELTGIANRRHFFQQLEHEIKRLSRLQLPLCLVMMDIDNFKLVNDRYGH 197

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFA---------AAALGSSEQEAAILAND 198
            VGDK++   + Q +     P  + GRLGGEEFA         AA    +   +++   D
Sbjct: 198 QVGDKILQHFT-QFISARTRPYDIFGRLGGEEFALLLPETTVDAAQKIVTRMMSSLANED 256

Query: 199 LRKIIENSQINISSGPS------IH--ITISAGIAE------------RCHKEPISTIIY 238
           +  I+ + Q   S+G S      IH  I  SA IA+            +C  +    ++ 
Sbjct: 257 ISAIVADFQYQFSAGVSALTPVIIHHGIDNSADIADVEQVALPVETGSQCRSDA-EKLVA 315

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
            AD+ALY AK  GRNRVV + D+
Sbjct: 316 EADKALYQAKTLGRNRVVIWDDV 338


>gi|332160194|ref|YP_004296771.1| HmsT protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|318607242|emb|CBY28740.1| putative membrane protein [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664424|gb|ADZ41068.1| HmsT protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|330863409|emb|CBX73530.1| hypothetical protein YEW_AO02740 [Yersinia enterocolitica W22703]
          Length = 366

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 23/248 (9%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILV---ENLSLVIISITISLLLGY------ 84
            F+IF  + I +++ FL +   T    L  I +   +N+  +I +I + L+ G+      
Sbjct: 112 LFTIFFISTIALSDNFLAFCLHTAPAALTVIFLDDFQNIFRIIFTIMLPLI-GFSLHHLM 170

Query: 85  ------ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFF 134
                  +  ++  L+    + S LS ID L+ L N     + L +   +      ++  
Sbjct: 171 LRRSDDFTRKLVARLYNEREKFSDLSMIDPLTSLYNRRGLENKLETLLAQSPGNHYVLLL 230

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK  NDN+GH +GD+ +  ++  +     +   V R GGEEF       SE+ A+ 
Sbjct: 231 DIDHFKAYNDNYGHTMGDQALVRVAAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYASQ 290

Query: 195 LANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           LA  +R+ +    I    +   S  +T+SAGI+       +++ +  AD+ALY AKK GR
Sbjct: 291 LAERVRERVLGLDIPHVFNHKVSTTVTLSAGISP-LQPYDLASSLKAADEALYRAKKDGR 349

Query: 253 NRVVCFSD 260
           N+V    D
Sbjct: 350 NKVAFAED 357


>gi|299536794|ref|ZP_07050102.1| response regulator receiver modulated diguanylate cyclase
           [Lysinibacillus fusiformis ZC1]
 gi|298727806|gb|EFI68373.1| response regulator receiver modulated diguanylate cyclase
           [Lysinibacillus fusiformis ZC1]
          Length = 401

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 9/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNF 146
           L I  N +++ +  D L+ L N  AF   L       S  + L+++  DID FK+ ND +
Sbjct: 215 LAIKNNELAEQALKDSLTNLPNRRAFNQKLNKIGQQLSQTQPLTVIMIDIDCFKKFNDYY 274

Query: 147 GHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           GH  GD  I  ++  L  + G    FV R GGEEF   +  + +    +    L +I + 
Sbjct: 275 GHLQGDAAIVKVASLLEEIAGKYNAFVARWGGEEFVMISQHTHKVAEPVCEEILEEIRQL 334

Query: 206 SQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  ++ S  +  +T+S G+  A+    E + T    ADQALY+AK++GRN   C
Sbjct: 335 NIPHLQSTIAQQVTVSIGMCQAKIAKYEHLQTCCELADQALYLAKQNGRNNYFC 388


>gi|319765013|ref|YP_004128950.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|330827208|ref|YP_004390511.1| diguanylate cyclase [Alicycliphilus denitrificans K601]
 gi|317119574|gb|ADV02063.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|329312580|gb|AEB86995.1| diguanylate cyclase [Alicycliphilus denitrificans K601]
          Length = 377

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 85/162 (52%), Gaps = 11/162 (6%)

Query: 107 DCLSGLLNH----SAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N     +A   +L    E+   LS++  DID+FK+IND  GH  GD V+  L+
Sbjct: 207 DPLTGLFNRRQLDAALAPALRRCREQGTPLSVLLIDIDHFKRINDAHGHAAGDMVLQALA 266

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHI 218
             L+          RLGGEEF    L      AAI  A +LR+  E  ++  S G  +  
Sbjct: 267 RLLLRHARPQDLACRLGGEEF-LLVLDDMPVAAAIERAQELRQAFEALRVR-SEGEELAA 324

Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           T+S G+A    H +    ++  ADQALY AK+ GRNRVV ++
Sbjct: 325 TLSCGVAAFPQHADQPQALLACADQALYTAKEQGRNRVVMWA 366


>gi|148547736|ref|YP_001267838.1| diguanylate cyclase [Pseudomonas putida F1]
 gi|148511794|gb|ABQ78654.1| diguanylate cyclase [Pseudomonas putida F1]
          Length = 522

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 11/177 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDIDYFK 140
           +I + L  ++  +  L+  D L+GL N       F   L     +   L++V  D+DYFK
Sbjct: 332 AIERALLQAHQTLKALALTDSLTGLGNRRRLDGVFEPELRRARRQGYPLALVMLDLDYFK 391

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GHP GD+ +   ++ L      P  +  R GGEEF      +  + A +L  +L
Sbjct: 392 AYNDRYGHPAGDQCLRRFAEVLQQALKRPADLAVRYGGEEFTLLLPDTDGRGAEMLVQEL 451

Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPIS--TIIYRADQALYVAKKSGRN 253
           +K++    +  ++ P   ++ SAGIA     +E ++   ++  AD+ALY AK+ GR+
Sbjct: 452 QKLLRRQALEHAASPLGRVSFSAGIAVVDLAREGVTAEALVAAADRALYQAKQQGRD 508


>gi|186685808|ref|YP_001869004.1| response regulator receiver modulated diguanylate cyclase [Nostoc
           punctiforme PCC 73102]
 gi|186468260|gb|ACC84061.1| response regulator receiver modulated diguanylate cyclase [Nostoc
           punctiforme PCC 73102]
          Length = 341

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 89/182 (48%), Gaps = 17/182 (9%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
           + K+L  +   +  L+ +D L+ L N   F         +L      LS++  DIDYFK 
Sbjct: 160 VYKQLEAANQALQHLANVDGLTELANRRRFDDYLNTQWINLAQEESPLSMILCDIDYFKF 219

Query: 142 INDNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            ND +GHP GD    KV A L+   +        V R GGEEFA     +    A  +A 
Sbjct: 220 YNDKYGHPAGDVCLQKVGAVLN---LKAQKHQDLVARYGGEEFAVIMPYTHASGAIHVAA 276

Query: 198 DLRKIIENSQI-NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNR 254
            ++  I++ QI +  S  S H+T+S G+A      +   S +I RAD+ALY AK  GR+R
Sbjct: 277 TIQAGIKDLQIAHAGSAVSQHVTLSMGVATVVPTWESSPSDLIVRADKALYQAKAGGRDR 336

Query: 255 VV 256
            V
Sbjct: 337 FV 338


>gi|262171594|ref|ZP_06039272.1| GGDEF family protein [Vibrio mimicus MB-451]
 gi|261892670|gb|EEY38656.1| GGDEF family protein [Vibrio mimicus MB-451]
          Length = 525

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 106/193 (54%), Gaps = 18/193 (9%)

Query: 76  ITISLLLGYISGSILKE-------LFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSY 125
           + ISLLLGYI+  +L+E       L      +  L+  D L+G+ N  +F   +S++ + 
Sbjct: 314 VIISLLLGYITRLLLEEKTRLEEMLDERTAELRYLAEHDSLTGIYNRRSFNNLLSNMLNS 373

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAA 184
            +  ++V FDID FKQIND+ GH VGD  +  + + +   +     FV R+GG+EFA  +
Sbjct: 374 GQPFTLVSFDIDCFKQINDSHGHLVGDDALVHVVNLVTQKLLPNDHFV-RMGGDEFAILS 432

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQ 242
             +  +  +     +R  +E + + I+ G S+ +T+S G  I+E  ++   S +++  D 
Sbjct: 433 NVAERETLSNYLESIRATVERNPLVINQG-SVALTVSIGACISEGLNE---SELLHSVDA 488

Query: 243 ALYVAKKSGRNRV 255
            LY++K  GRNRV
Sbjct: 489 QLYLSKTLGRNRV 501


>gi|260777611|ref|ZP_05886504.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605624|gb|EEX31909.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 411

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 21/174 (12%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +L+  D L+ +    A  S L    ++ +I   DID+FK  ND +GH  GD V+  ++ +
Sbjct: 236 ELAFKDRLTDIPGRLALESDLRHLGKRYTIAMLDIDHFKSFNDTYGHETGDDVLKLVASK 295

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPS--- 215
           +  V G    V R GGEEF          EA      LR  IE  ++   N  S P    
Sbjct: 296 MQRVGGRAK-VYRYGGEEFTVLFKNKDVDEALDHLELLRSSIEEYEMVVRNEKSRPKDDK 354

Query: 216 --------------IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                         +++TIS G+A+  + + +S ++  AD ALY AK++GRNR+
Sbjct: 355 SGAKKRRKSNSHDHVNVTISIGVADHENADSVSEVMKCADAALYKAKRAGRNRI 408


>gi|109900516|ref|YP_663771.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109702797|gb|ABG42717.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
          Length = 631

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 18/183 (9%)

Query: 92  ELFISYNRISQLSR-------IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           EL I+   +S+++R       +D L+G+ N   F       +        +L +   DID
Sbjct: 443 ELEIALRELSEINRELEEKNTLDALTGIRNRRYFDKKYLAEVRRSRRERTELVVAMIDID 502

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILA 196
           +FK++ND  GH VGD+ I F++++L      P   V R GGEEF+     +  + A  L 
Sbjct: 503 HFKRVNDEHGHLVGDECIKFVAERLKKALKRPSDDVCRYGGEEFSVILPSTDIKGAQDLL 562

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNR 254
             LR  I+++ +  S+G  +++T+S G+A      ++    +I  ADQ LY AK +GRN 
Sbjct: 563 EQLRLDIQDTPV-YSAGVVVNLTVSIGLASAIMDPQQSEDVLIGFADQLLYQAKNNGRNC 621

Query: 255 VVC 257
           +V 
Sbjct: 622 IVA 624


>gi|126174348|ref|YP_001050497.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica OS155]
 gi|125997553|gb|ABN61628.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica OS155]
          Length = 343

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 97/203 (47%), Gaps = 39/203 (19%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGH 148
           +   +++L+  D L+G+ N   F   L    ++LS       +V  DID FK +ND +GH
Sbjct: 135 AQTELNRLALTDELTGIANRRHFFQQLEHEIKRLSRLQLPLCLVMMDIDNFKLVNDRYGH 194

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFA---------AAALGSSEQEAAILAND 198
            VGDK++   + Q +     P  + GRLGGEEFA         AA    +   +++   D
Sbjct: 195 QVGDKILQHFT-QFISARTRPYDIFGRLGGEEFALLLPETTVDAAQKIVTRMMSSLANED 253

Query: 199 LRKIIENSQINISSGPS------IHITI--SAGIAE------------RCHKEPISTIIY 238
           +  I+ + Q   S+G S      IH  I  SA IA+            +C +     ++ 
Sbjct: 254 ISAIVADFQYQFSAGVSALTPVIIHHEIDNSADIADVEQVALPVETGSQC-RSDAEKLVA 312

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
            AD+ALY AK  GRNRVV + D+
Sbjct: 313 EADKALYQAKTLGRNRVVIWDDV 335


>gi|323491710|ref|ZP_08096888.1| hypothetical protein VIBR0546_05683 [Vibrio brasiliensis LMG 20546]
 gi|323314072|gb|EGA67158.1| hypothetical protein VIBR0546_05683 [Vibrio brasiliensis LMG 20546]
          Length = 414

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 87/168 (51%), Gaps = 5/168 (2%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           + + +L+  D L+GL N     +   S  +  +I   DID FKQ+ND+FGH  GD  +  
Sbjct: 249 DELYKLANQDALTGLWNRRFLFAQACSGCQLRNIAMIDIDLFKQVNDSFGHDGGDAALKN 308

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +++ L + F   + V R GGEEF   +   +E+    L N +R+ +E +      G +I+
Sbjct: 309 VANILKIYFNEDVVV-RFGGEEFCIQSCAPAEEFITRLDN-MRQRVEKTPAKY-QGSTIN 365

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           +T+S G++       I   I  AD  LY AKK GRN+VV   +I   T
Sbjct: 366 VTVSVGVSSI--DGDIHDQIKLADDRLYFAKKMGRNQVVYEDEIVKKT 411


>gi|121593570|ref|YP_985466.1| diguanylate cyclase [Acidovorax sp. JS42]
 gi|120605650|gb|ABM41390.1| diguanylate cyclase [Acidovorax sp. JS42]
          Length = 507

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 84/178 (47%), Gaps = 20/178 (11%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L    +R S  +R D L+G LN   F       I+     +  L +   D+D FK IND 
Sbjct: 336 LRQELDRASAQARHDPLTGSLNRKGFAEAMEREIARARRQDAPLCVALLDVDNFKSINDR 395

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD  +  L+     V      + R GGEEF    L  +E     LA  + K +E 
Sbjct: 396 LGHTAGDAALVHLAQVTREVMRPQDQLARYGGEEF-VIILPDTE-----LAEGV-KAMER 448

Query: 206 SQINISS------GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            Q  +++         + IT SAG+A+   +E  +  I RADQ +Y+AK++G+NRVV 
Sbjct: 449 LQRELTTRYFLKDQERVLITFSAGVAQVEGEEGSADAIRRADQGMYLAKRTGKNRVVA 506


>gi|18310770|ref|NP_562704.1| hypothetical protein CPE1788 [Clostridium perfringens str. 13]
 gi|18145451|dbj|BAB81494.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 299

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 73/129 (56%), Gaps = 4/129 (3%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSS 188
           +++  DID FK++ND +GH VGDK++   +  L   +     ++GR GGEEF      ++
Sbjct: 172 TVIMTDIDSFKKVNDTYGHLVGDKILRDFAKVLNNNIRENSDWIGRYGGEEFIIVLNNTN 231

Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVA 247
            +    +A  LRKIIE  +++   G  S+ IT S G+ E   KE     I  AD+ LY+A
Sbjct: 232 LKNGVKVAEKLRKIIE--KMSFDYGDLSLKITSSFGVCEVSEKEDPFDTIKNADEKLYMA 289

Query: 248 KKSGRNRVV 256
           K +GRN+ V
Sbjct: 290 KMTGRNKTV 298


>gi|115524075|ref|YP_780986.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
 gi|115518022|gb|ABJ06006.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
          Length = 507

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 12/177 (6%)

Query: 91  KELFISYNRISQLSR---IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           +++ +  NR+  + R    D L+G+ N   F +S+G        ++  LS+V  DID FK
Sbjct: 163 EQIRVLQNRLDLVQRETLSDPLTGVANRRMFDASIGRLIEQADQHDSPLSLVLIDIDNFK 222

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
             ND FGH VGD ++  ++ ++         + R GG+EFA     +  + A  +A  +R
Sbjct: 223 HFNDKFGHLVGDGILRLVATEITQSCRANDVICRNGGDEFAVILPETPIEGALAVAEAIR 282

Query: 201 KIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + +   Q+    +  P   IT S G+A+         ++ RAD+ LY AK  GRNRV
Sbjct: 283 ERVMKRQLLRRSTKEPMGRITTSIGVAQHQKGNSPEALVARADKWLYSAKTLGRNRV 339


>gi|124267884|ref|YP_001021888.1| diguanylate cyclase [Methylibium petroleiphilum PM1]
 gi|124260659|gb|ABM95653.1| diguanylate cyclase [Methylibium petroleiphilum PM1]
          Length = 251

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 12/186 (6%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------I 131
           +L  G    + L++L    + +  LS  D L+GL N   F  +L    ++++       +
Sbjct: 35  ALSTGPRDATWLQQLV---DALCDLSSRDALTGLANRRQFDLALERETDRVARSGEAALV 91

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK++ND +GH  GD V+  ++  L         V R GGEEFA          
Sbjct: 92  LLLDIDHFKRVNDTYGHAAGDMVLQAVARTLQECVRPMDTVARYGGEEFAIVLPNCPPAF 151

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKK 249
           A   A  +R+ +E   + +  G  + +T+SAG   A    +        RAD  LY AK 
Sbjct: 152 AQAAAERVRRAVEARTVPLPQGTMLSVTLSAGGAFAPPWVRSSARLWTERADAQLYRAKA 211

Query: 250 SGRNRV 255
            GRNR 
Sbjct: 212 EGRNRT 217


>gi|293401458|ref|ZP_06645601.1| response regulator [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305096|gb|EFE46342.1| response regulator [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 311

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 82/160 (51%), Gaps = 5/160 (3%)

Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GLLN +     L +    N  + ++  DID FK +ND FGH +GD V+  ++  L 
Sbjct: 147 DALTGLLNRNYVDQKLKNTLDINIPMMLIIADIDDFKYVNDYFGHEIGDMVLIGIASTLA 206

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   V R GGEEF     G ++Q+   +A  +R  +E+   + S+G   H T++ G
Sbjct: 207 AT-AAKWEVIRWGGEEFLIVFKGVTQQDCTEVAEQIRYAVEHLPFH-SNGEDFHCTLTQG 264

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           I    H    S  +  AD+ALY  K+ G+N  +C+  +++
Sbjct: 265 ITCYDHALTFSENVEMADKALYYGKRHGKNCFICYEHMKD 304


>gi|242238781|ref|YP_002986962.1| diguanylate cyclase [Dickeya dadantii Ech703]
 gi|242130838|gb|ACS85140.1| diguanylate cyclase [Dickeya dadantii Ech703]
          Length = 469

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 90/193 (46%), Gaps = 22/193 (11%)

Query: 85  ISGSILKELFISYN---------RISQLSRIDCLSGLLNHSAFISSLGSY-------NEK 128
           I+  I   LF++ N         R+   +  D L+  L+   F  +L +Y       N  
Sbjct: 277 IAAIIFSPLFMAMNAKTIRLLNKRLLLQASYDFLTNTLSRYGFNEALTNYGKEERYRNVS 336

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           ++I+  DID+FK IND+FGH  GD+V+  ++  +         + R+GGEEFA      S
Sbjct: 337 VNIMLIDIDHFKHINDSFGHDCGDEVLKQVAAIIKDTINEQGLISRIGGEEFAVVCFDYS 396

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-----EPISTIIYRADQA 243
                 LA+ LR+ I  +    +  P + + IS G+A            +  +  +AD+ 
Sbjct: 397 PDAFYWLADKLRRRIYETTFMFNQSP-VPVAISIGLAHASSPNGDLLNTVHQLCTQADKN 455

Query: 244 LYVAKKSGRNRVV 256
           LY AK+ GRN+ V
Sbjct: 456 LYAAKRQGRNQTV 468


>gi|238917301|ref|YP_002930818.1| histidine ammonia-lyase [Eubacterium eligens ATCC 27750]
 gi|238872661|gb|ACR72371.1| histidine ammonia-lyase [Eubacterium eligens ATCC 27750]
          Length = 602

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 99/205 (48%), Gaps = 12/205 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI----- 119
           LV N   ++I     L +G IS    +   +  +     +++D  +G+ N  A       
Sbjct: 218 LVFNGQALMIESDKRLTVGVISEPDKRTRVVQEHTDMDEAKLDSATGIYNKKAITDMITE 277

Query: 120 ----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
               +++ + N ++ ++  DID FK++ND++GH  GD+VI   +D L +  G    VGR+
Sbjct: 278 EINKAAVENKNRQMYLMILDIDNFKRVNDSYGHYFGDEVIKSFADSLRMSVGGRGLVGRI 337

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPIS 234
           GG+EF       S +E  I+   +RK ++   +     P    + S GI++         
Sbjct: 338 GGDEFMVLLKDVSVEEIRIMLKSMRKGLK--MLLAQKQPEYLFSTSIGISQFSKDGTDFE 395

Query: 235 TIIYRADQALYVAKKSGRNRVVCFS 259
           T+   AD ALY+AK+ G++R + + 
Sbjct: 396 TLFKIADAALYIAKEKGKDRYIIYD 420


>gi|163736853|ref|ZP_02144271.1| glutamyl-tRNA synthetase [Phaeobacter gallaeciensis BS107]
 gi|161389457|gb|EDQ13808.1| glutamyl-tRNA synthetase [Phaeobacter gallaeciensis BS107]
          Length = 511

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 8/167 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           + +   S  D L+G+ N   F+  L            +L ++ FD D FK  ND  GH  
Sbjct: 328 DELHDQSTRDPLTGVYNRRYFLGELRNAVALADRRASQLGVLSFDADRFKTFNDTHGHDA 387

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  + D L  +F       R+GGEEFA     + +++   +   LR  IE+  +  
Sbjct: 388 GDMVLRAIGDTLKELFRNGEVCCRMGGEEFAVFLPDTDKEQTMEVGEALRAAIEDITLRY 447

Query: 211 SSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256
            SG    +TIS G+A       +   +++ AD+ALY AK +GRN VV
Sbjct: 448 GSGTLPRVTISIGVASYPEDGLLPQDLMHAADRALYAAKDAGRNCVV 494


>gi|158333739|ref|YP_001514911.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158303980|gb|ABW25597.1| diguanylate cyclase (GGDEF domain) [Acaryochloris marina MBIC11017]
          Length = 443

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 8/172 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           +L  S   + +L+ +D L+ + N   F       +       +++S++  DID+FKQ+ND
Sbjct: 258 KLEQSQQDLYRLATLDGLTEVYNRREFNRWLRVEVEKSQRNTDQVSLIMVDIDHFKQLND 317

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD  +  ++  L         V R GGEEFA     ++  ++  +A+ +R  I 
Sbjct: 318 TYGHQAGDLALCEVAQLLQREVRPGDIVCRYGGEEFAVILPKTNHDDSVAIADRIRLAIA 377

Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
              I + S   I +T S G+A      +    +I +ADQALY AK SGRNRV
Sbjct: 378 EEAIILPSLQQIEMTASLGVATFPGDAQTKEHLIKQADQALYGAKTSGRNRV 429


>gi|134292528|ref|YP_001116264.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
 gi|134135685|gb|ABO56799.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
          Length = 520

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 99/208 (47%), Gaps = 17/208 (8%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQ-----LSRIDCLSGLLNHSAFISSL 122
           + ++ I S  ++L +G+I  S+L ++ +   + ++     L+R D L+GL N      +L
Sbjct: 303 DRAIPIGSAMVALAIGFIGLSLLLDVQLRKRQRAETELQALARTDGLTGLDNRRMLDVTL 362

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGR 174
                +       LS++F D+D+FK+ ND  GH  GD  +A +   +      P  +  R
Sbjct: 363 AREWRRAARSQHALSLLFVDVDHFKRYNDTQGHQAGDDALAAVGRCIAGCLRRPADYAAR 422

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
            GGEEF           A  +A  +R  I +  I   +G    +T S G+   C+ E   
Sbjct: 423 YGGEEFVVVLPDVDTDGAVAIAETIRTGILDLGIRHDAGMCGRVTASIGVTT-CYPERGD 481

Query: 235 TI---IYRADQALYVAKKSGRNRVVCFS 259
           TI   +  AD ALY AK SGRN+VV  +
Sbjct: 482 TIQAALKLADDALYRAKASGRNQVVVHT 509


>gi|77747944|ref|NP_638865.2| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|77761101|ref|YP_241741.2| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 317

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 15/178 (8%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           F +Y  +   ++ D L+GL N   F          ++ G+    + +   DID+FK++ND
Sbjct: 126 FQNYRSLLDDAQRDALTGLRNRKTFDDMILRLFAANADGAQENAVWLGIVDIDHFKRVND 185

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-II 203
            FGH  GD+V+  ++  +   F     + R GGEEF     G     A  L    R+ + 
Sbjct: 186 TFGHLYGDEVLLLVAQLMQRCFRQDDLLFRFGGEEFVIVLRGVDRDTAVSLFERFRRAVA 245

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E+S   + +     +T+S GI E      +S ++  AD+ALY AK+ GRNR    S++
Sbjct: 246 EHSFPQVGT-----VTLSTGIVELSDGRLVSQMLDEADKALYWAKQHGRNRAAVHSEL 298


>gi|264678988|ref|YP_003278895.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|299530046|ref|ZP_07043473.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|262209501|gb|ACY33599.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|298722026|gb|EFI62956.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 405

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 7/155 (4%)

Query: 106 IDCLSGLLNHSAFISSLGSY--NEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           +D L+ +LN  AF  +      +++L   +++  DID+FK+INDN+GH  GD+V+  ++ 
Sbjct: 227 LDALTQILNRRAFSEAAQHRLADQRLYPMALLASDIDHFKRINDNWGHDKGDEVLQLVAR 286

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            +     +   V R GGEEF         Q A  +A  +   + N Q  +  GP+  +T+
Sbjct: 287 AMQHNVRSNDLVARFGGEEFMVLLTKIDLQGAEQVAKRIGLELRNDQELLPKGPA--LTL 344

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S GI    + + +   + +ADQ LY AK +GR+RV
Sbjct: 345 SFGITSISNADQLEGALRQADQLLYSAKNAGRDRV 379


>gi|258621527|ref|ZP_05716560.1| GGDEF family protein [Vibrio mimicus VM573]
 gi|258586145|gb|EEW10861.1| GGDEF family protein [Vibrio mimicus VM573]
          Length = 525

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 106/193 (54%), Gaps = 18/193 (9%)

Query: 76  ITISLLLGYISGSILKE-------LFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSY 125
           + ISLLLGYI+  +L+E       L      +  L+  D L+G+ N  +F   +S++ + 
Sbjct: 314 VIISLLLGYITRLLLEEKTRLEEMLDERTAELRYLAEHDSLTGIYNRRSFNNLLSNMLNS 373

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAA 184
            +  ++V FDID FKQIND+ GH VGD  +  + + +   +     FV R+GG+EFA  +
Sbjct: 374 GQPFTLVSFDIDCFKQINDSHGHLVGDDALVHVVNLVTQKLLPNDHFV-RMGGDEFAILS 432

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQ 242
             +  +  +     +R  +E + + I+ G S+ +T+S G  I+E  ++   S +++  D 
Sbjct: 433 NVAERETLSNYLESIRATVERNPLVINQG-SVALTVSIGACISEGLNE---SELLHSVDA 488

Query: 243 ALYVAKKSGRNRV 255
            LY++K  GRNRV
Sbjct: 489 QLYLSKTLGRNRV 501


>gi|226940026|ref|YP_002795099.1| Diguanylate cyclase [Laribacter hongkongensis HLHK9]
 gi|226714952|gb|ACO74090.1| Diguanylate cyclase [Laribacter hongkongensis HLHK9]
          Length = 350

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 10/175 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           E  ++  R+  L   D L+GL N   F   L         + + L+ +  D D+FK+IND
Sbjct: 168 ENVLNRERLKWLGLTDPLTGLYNRRYFEQRLQEEAQRTRRHGDPLACLMLDADHFKRIND 227

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD V+  L+ ++           R+GGEEFA     +  +   ++A  +R  I 
Sbjct: 228 TWGHQAGDVVLKVLARRVRQQLRGCDVAARIGGEEFAVLLPSTPVRHVQLVAERIRLAIA 287

Query: 205 NSQINISSGPSIHITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              +++S    + +++S G   +A          ++ RAD ALY AK++GRNR +
Sbjct: 288 GEPVHVSPDCVLQVSVSLGAAMLAPGAADISPERLMARADAALYQAKRNGRNRTM 342


>gi|157374493|ref|YP_001473093.1| GGDEF family protein [Shewanella sediminis HAW-EB3]
 gi|157316867|gb|ABV35965.1| GGDEF family protein [Shewanella sediminis HAW-EB3]
          Length = 368

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 9/171 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           +EL  +   + +LS  D L+GL N    +  L           + L+ +  D D+FK +N
Sbjct: 193 QELIDANAHLEKLSVTDVLTGLPNRRFAMEKLTQLWQESVQSQQPLACMMLDADHFKTVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD+V+  LS +L     T   V RLGG+EF      +       +A  + + I
Sbjct: 253 DTYGHDAGDRVLCELSRELQHAVRTDDIVCRLGGDEFVIICPATDLNGIRHIATQVHEKI 312

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
               ++  SG S   +IS G++ R  + +  S +I RAD+A+Y+AK++G+N
Sbjct: 313 AAMTVSFGSG-SWQGSISVGVSSRTDQMQDYSELIKRADEAVYLAKQAGKN 362


>gi|218890494|ref|YP_002439358.1| hypothetical protein PLES_17541 [Pseudomonas aeruginosa LESB58]
 gi|254236275|ref|ZP_04929598.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126168206|gb|EAZ53717.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|218770717|emb|CAW26482.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
          Length = 783

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 100/186 (53%), Gaps = 22/186 (11%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L +L  ++  + Q++R D L+GL N +AF       + +     + L+++F D+D+FK
Sbjct: 329 ALLNQLDHAHASLRQMARYDSLTGLQNRTAFNEVFVQHLENCRLRGKGLAVMFLDLDHFK 388

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL- 199
           +IND+ GH  GD+++  +S+++  V      V R  G+EF   A  + + EA IL+  L 
Sbjct: 389 RINDSLGHDSGDQLLKIVSERIRSVLRDSDVVARFAGDEFCVLADLTQDHEAHILSQRLM 448

Query: 200 RKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRN 253
           +K+ E   ++   G ++ +T S G++      E+C +     ++  A  AL+ +K  GRN
Sbjct: 449 QKMKEPIALD---GRTLVMTASVGVSLYPNDGEQCEE-----LLKNAGLALHQSKACGRN 500

Query: 254 RVVCFS 259
               FS
Sbjct: 501 NAQFFS 506


>gi|322804630|emb|CBZ02182.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Clostridium botulinum H04402 065]
          Length = 447

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 14/162 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +I  L+  D L+GL N    I ++        NEK +++F D+D+FK IND  GH VGD 
Sbjct: 22  KILGLAYYDSLTGLSNRKKIIETINKTINNYENEKFAVLFIDLDHFKSINDTLGHDVGDY 81

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQIN 209
           V+  +S +  ++      +GRLGG+EF       ++  +E+ A  +   L   I+  + +
Sbjct: 82  VLEKVSARFKMLLSPKHKIGRLGGDEFIIVQNITSISDAEKLACKICTTLNHSIKYKEDD 141

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           +  G SI I+I     +       ST++  AD A+Y AKK+G
Sbjct: 142 LFIGASIGISIYPEDGKDT-----STLMKNADAAMYAAKKNG 178


>gi|320157487|ref|YP_004189866.1| sensory box/GGDEF family protein [Vibrio vulnificus MO6-24/O]
 gi|319932799|gb|ADV87663.1| sensory box/GGDEF family protein [Vibrio vulnificus MO6-24/O]
          Length = 626

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 21/173 (12%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDIDYFKQINDNFGHP 149
           R+  LS  D L+ + N   F   L  +   +          +   DIDYFK++ND  GH 
Sbjct: 460 RLRNLSERDELTQIWNRRKFEQQLAQHTSLIERYPATPMACLALVDIDYFKRVNDEQGHD 519

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+VI  ++  L         + R+GGEEFA     ++   A ++ N LR       + 
Sbjct: 520 EGDRVIREVAKILQNGLRNTDVLARVGGEEFAIIMPHTTVSAAEVVLNRLR-------VA 572

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VCFSD 260
           +S    + +TIS G  E       ST+ Y+ AD ALY +K SGRN+V +C++D
Sbjct: 573 VSISKQVDVTISVGYTELTSN---STLSYKCADIALYDSKSSGRNKVSLCYND 622


>gi|302131918|ref|ZP_07257908.1| GGDEF [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 493

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 95/193 (49%), Gaps = 15/193 (7%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN----HSAFISSLGS 124
           LS+V+  I +  L+  +  S   +L ++      L+R D LSGLLN    H   ++ L  
Sbjct: 30  LSMVVPFILLKRLMQRLQSSY-NDLLVAQALSDSLARHDPLSGLLNRRVFHEQLVARLQQ 88

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAA 183
            + + ++   D+D FK IND  GH VGD  I  +++ L     G    V RLGG+EF  A
Sbjct: 89  ESTRTAVFLIDLDKFKLINDTHGHAVGDAAICAVAESLRDATAGWQASVARLGGDEFGLA 148

Query: 184 ALGSSEQ-EAAILANDLRKIIENSQINISSG--PSIHITISAGIA-ERCHKEPISTIIYR 239
             G   Q E A LA ++      ++I +SS   P + ++ + G+A           ++ R
Sbjct: 149 VSGDFNQFELATLAENVL-----AKIALSSAVLPRVILSATLGVAISPLDGSDAEVLLQR 203

Query: 240 ADQALYVAKKSGR 252
           AD A+Y  K SGR
Sbjct: 204 ADSAMYRGKHSGR 216


>gi|294666401|ref|ZP_06731647.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603843|gb|EFF47248.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 507

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 87/180 (48%), Gaps = 18/180 (10%)

Query: 96  SYNRISQLSRI---DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145
           S NR+  L+     D L+G+ N     ++L    E        LSI F D+D FK++ND 
Sbjct: 317 SGNRMRHLAEQASRDALTGVFNRHQLGTALTHEFELASRQGWPLSIAFIDLDDFKRVNDA 376

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKII 203
            GH VGD+V+   +  L  +  T   V R GGEEF    L ++  +AA++  +  L +  
Sbjct: 377 HGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEF-LVILPNTPADAALMVIERILAETA 435

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRVVCFS 259
                 +  GP +HIT SAG+A     E     I  ++  AD  LY +K  GRNRV  + 
Sbjct: 436 RTPMAQLQGGP-LHITFSAGLATHGGAERQFDSIDHLLQAADSTLYRSKHRGRNRVTAYD 494


>gi|283788392|ref|YP_003368257.1| hypothetical protein ROD_48701 [Citrobacter rodentium ICC168]
 gi|282951846|emb|CBG91556.1| putative membrane protein [Citrobacter rodentium ICC168]
          Length = 354

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 7/172 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE----KLSIVFFDIDYFKQINDNFG 147
            L      ++ LS +D L+GL N       L +  E    +  ++  DID+FK  ND++G
Sbjct: 177 RLLAEKETLNDLSMLDPLTGLYNRRGLQHRLETLLEIDSHERYVLLIDIDHFKAYNDHYG 236

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD+ +  +S  +     +   V R GGEEF      S  Q+A   A  +R+ + +  
Sbjct: 237 HMMGDQALIRVSAAIRDAVRSRDVVARFGGEEFMVLLTASDPQQARAAAERIRQSVYDLS 296

Query: 208 IN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I    +   + ++TIS GIA    ++ +   I RAD+ALY AK  GRN ++ 
Sbjct: 297 IPHMFNESVATNVTISIGIAPLMERD-VEEAIGRADKALYQAKHLGRNHILV 347


>gi|237797721|ref|ZP_04586182.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|237806000|ref|ZP_04592704.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331020571|gb|EGI00628.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331027110|gb|EGI07165.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 545

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 18/178 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL  + + +  +++ D L+ L N   F +SL          N  L+I+  DID+FKQ ND
Sbjct: 357 ELNNTRHELEIIAQTDSLTNLANRRCFDASLQKEWGRASRNNSVLAIILLDIDWFKQYND 416

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDL 199
            +GH  GD  +     Q+  + G+ +        R GGEEF      +    A  +A  +
Sbjct: 417 RYGHLKGDDCLM----QVAEILGSCINRSGDLAARYGGEEFVILLAETDLAGALSVAEKV 472

Query: 200 RKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           R  IEN+ I  S+ P  ++TIS+G+       KE     +  AD+ LY AK  GRNRV
Sbjct: 473 RSAIENAFIEHSASPVGNLTISSGVVAISAPEKEDHKAALEEADRLLYSAKTKGRNRV 530


>gi|190576092|ref|YP_001973937.1| putative transmembrane GGDEF signalling protein [Stenotrophomonas
           maltophilia K279a]
 gi|190014014|emb|CAQ47654.1| putative transmembrane GGDEF signalling protein [Stenotrophomonas
           maltophilia K279a]
          Length = 524

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 82/164 (50%), Gaps = 10/164 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +++ SR D L+ LLN      +L +   +    +I+  DID FK INDN GH VGD  I 
Sbjct: 362 LNRASRTDPLTSLLNRRGLQQALDALQVQGIPFAILALDIDRFKSINDNHGHDVGDAAIV 421

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +++Q+         + R GGEEF     G S + A      LR+ I +        P  
Sbjct: 422 HIANQMRRYSRDSDILCRAGGEEFLLLLPGISAESARQAGERLRQHIADHPFE----PVG 477

Query: 217 HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            IT+S G+A     H +     +  AD+ALY+AK+ GRNRVV +
Sbjct: 478 TITVSLGVAHFPSFHVD-AEQALRLADKALYLAKEQGRNRVVVY 520


>gi|148257924|ref|YP_001242509.1| putative diguanylate cyclase [Bradyrhizobium sp. BTAi1]
 gi|146410097|gb|ABQ38603.1| putative diguanylate cyclase (GGDEF) [Bradyrhizobium sp. BTAi1]
          Length = 377

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 79/151 (52%), Gaps = 9/151 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+GL N +AFI++L   +   +I+  D+D FK IND FGH  GD+++  +  +L    
Sbjct: 201 DFLTGLPNRAAFIAALRGLDGPAAIIAIDLDGFKSINDAFGHQAGDELLCQVGARLRQCL 260

Query: 167 GTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITIS 221
           G      R GG+EF      AA       A  LA   R+++ + +   + +G  + I  S
Sbjct: 261 GDSGLAARFGGDEFMLLLPVAAAQPGRDAAGALA---RRVVSSLADPFVLAGTRVQIGAS 317

Query: 222 AGIAERCHKEP-ISTIIYRADQALYVAKKSG 251
           AGI    H+      +I +AD+ALY AK++G
Sbjct: 318 AGILLAEHRTAETEALIDQADRALYAAKRAG 348


>gi|146294937|ref|YP_001185361.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella putrefaciens CN-32]
 gi|145566627|gb|ABP77562.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella putrefaciens CN-32]
          Length = 1216

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 10/182 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + E  +S  RI  L+  D L+ L N  +  SSL        +   +++++F D+D+FK I
Sbjct: 777 ISERKMSEERIHFLAHHDSLTLLPNRLSLQSSLEIVFGEALASQSQIAVMFIDMDHFKNI 836

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH VGD+++  ++ +L  +      V RLGG+EF      ++  E A LA  LR  
Sbjct: 837 NDTLGHHVGDQLLLEVARRLKNIVDNNEIVARLGGDEFVVVLSDTNHDEVASLAEALRSG 896

Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +  SQ  I    S+H + S GI+        +  ++  AD A+Y AK +GRN    F+  
Sbjct: 897 L--SQTYIIDNNSLHSSPSIGISLFPTDGNTVEALMKNADMAMYRAKAAGRNNYQFFTAA 954

Query: 262 EN 263
            N
Sbjct: 955 MN 956


>gi|313202332|ref|YP_004040990.1| diguanylate cyclase [Methylovorus sp. MP688]
 gi|312441648|gb|ADQ85754.1| diguanylate cyclase [Methylovorus sp. MP688]
          Length = 601

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 85/166 (51%), Gaps = 13/166 (7%)

Query: 104 SRIDCLSGLLNHSAFISSLG---SYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIA 156
           S  D L+GL N   F  +     S  ++ +    I+  DID+FK +ND +GH  GD  + 
Sbjct: 424 SSTDFLTGLKNRRGFYEAANIEYSRAQRHACESCIMIIDIDHFKTVNDTYGHSAGDWALT 483

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS- 215
           F+   L           R GGEEF      S+ +E  + A  +R +I+ + ++I  GP  
Sbjct: 484 FIGGILKDNSRIHDISARHGGEEFICMLGNSNLEEGCLFAEKIRTLIQAAMVDI--GPDL 541

Query: 216 --IHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             I +T+S GI + +    P+  +I +AD+ALY+AK  GRNRV  F
Sbjct: 542 APIKLTVSIGITSSQFQHPPLDMMIEQADRALYMAKNLGRNRVQRF 587


>gi|297567483|ref|YP_003686455.1| diguanylate cyclase [Meiothermus silvanus DSM 9946]
 gi|296851932|gb|ADH64947.1| diguanylate cyclase [Meiothermus silvanus DSM 9946]
          Length = 354

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 15/165 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + QL+  D L+ L N           +     Y    +++  D+D+FK++ND  GH +GD
Sbjct: 185 MEQLAHTDHLTRLTNRRGLEPLLKQELQRAERYGLPFAVLLADLDHFKEVNDRHGHAIGD 244

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  ++ +L         V R GGEEF   A  +   +A  LA  L ++I +  +    
Sbjct: 245 QVLREVAPRLDHNLRQADTVARWGGEEFLILAPTTDLAQAGQLAERLIEVIRSEPVV--- 301

Query: 213 GPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255
             SI +TIS G++  C++  + + +++ RAD+ALY AK  GRNR+
Sbjct: 302 -GSIPVTISIGVS--CYRAGDSLESLLQRADEALYRAKALGRNRL 343


>gi|144898130|emb|CAM74994.1| sensory box/GGDEF domain protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 522

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 84/172 (48%), Gaps = 14/172 (8%)

Query: 100 ISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+ L N +       A  +   + N   +++  D+D FK IND +GH  GD
Sbjct: 348 LHRLAFKDMLTDLPNRTSLNEELVAAWTEWQNLNTPFAVIALDLDGFKPINDTYGHDAGD 407

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-- 210
            V+  +  +L  V       GR+GG+EF     G    E A LA  LR ++EN    +  
Sbjct: 408 AVLRAVGQRLQAVNRHNDVAGRMGGDEFLIILRGCKTAEQA-LAIGLR-VVENLGQEVVL 465

Query: 211 -SSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFS 259
             SG  + +  SAGIA      P  +  +  +ADQALY AK++G+N+   F 
Sbjct: 466 EGSGAVLRVGASAGIAHSAETGPRSLEDMTKQADQALYAAKRAGKNQAALFG 517


>gi|114706340|ref|ZP_01439242.1| diguanylate cyclase [Fulvimarina pelagi HTCC2506]
 gi|114538201|gb|EAU41323.1| diguanylate cyclase [Fulvimarina pelagi HTCC2506]
          Length = 376

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 115/248 (46%), Gaps = 13/248 (5%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI 85
           T ++ +     +++A   ++AN       +  + G   +L        +++   L + Y+
Sbjct: 129 TMVLTYGSGIVVYVAARPYVANTICIGAAIPAYVGT--VLCSETWRSGMAVVYVLAIVYV 186

Query: 86  SGSILK------ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--KLSIVFFDID 137
           + +  +      EL+ +   +   +  D L+GL N  A   +L S  +   ++I+F D+D
Sbjct: 187 AKATAQQYRAFFELYRTRKCLRDCALTDALTGLPNRRALDEALDSVPKGSDVAILFIDLD 246

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND FGH  GD ++  ++  L        FV R GG+EF       + +     A 
Sbjct: 247 GFKPVNDTFGHNAGDALLREIAHTLSSSISVAGFVARCGGDEFVVVLRDGNARFVEETAE 306

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +RK I  S++    G    I  S GIA     +  +++++  AD+A+Y AK++GR R+ 
Sbjct: 307 SIRKRI--SRLYDFDGGCAEIGASIGIASGTAGQSNLASLVREADEAMYDAKRAGRGRIA 364

Query: 257 CFSDIENN 264
            +++   N
Sbjct: 365 GYANHAKN 372


>gi|110800306|ref|YP_696472.1| GGDEF domain-containing protein [Clostridium perfringens ATCC
           13124]
 gi|110674953|gb|ABG83940.1| GGDEF domain protein [Clostridium perfringens ATCC 13124]
          Length = 289

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 73/129 (56%), Gaps = 4/129 (3%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSS 188
           +++  DID FK++ND +GH VGDK++   +  L   +     ++GR GGEEF      ++
Sbjct: 162 TVIMTDIDSFKKVNDTYGHLVGDKILRGFAKVLNNNIRENSDWIGRYGGEEFIIVLNNTN 221

Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVA 247
            +    +A  LRKIIE  +++   G  S+ IT S G+ E   KE     I  AD+ LY+A
Sbjct: 222 LKNGVKVAEKLRKIIE--KMSFDYGDLSLKITSSFGVCEVSEKEDPFDTIKNADEKLYMA 279

Query: 248 KKSGRNRVV 256
           K +GRN+ V
Sbjct: 280 KMTGRNKTV 288


>gi|15598507|ref|NP_252001.1| hypothetical protein PA3311 [Pseudomonas aeruginosa PAO1]
 gi|48474660|sp|Q9HYT3|Y3311_PSEAE RecName: Full=Uncharacterized signaling protein PA3311
 gi|9949440|gb|AAG06699.1|AE004753_7 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 783

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 100/186 (53%), Gaps = 22/186 (11%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L +L  ++  + Q++R D L+GL N +AF       + +     + L+++F D+D+FK
Sbjct: 329 ALLNQLDHAHASLRQMARYDSLTGLQNRTAFNEVFVQHLENCRLRGKGLAVMFLDLDHFK 388

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL- 199
           +IND+ GH  GD+++  +S+++  V      V R  G+EF   A  + + EA IL+  L 
Sbjct: 389 RINDSLGHDSGDQLLKIVSERIRSVLRDSDVVARFAGDEFCVLADLTQDHEAHILSQRLM 448

Query: 200 RKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRN 253
           +K+ E   ++   G ++ +T S G++      E+C +     ++  A  AL+ +K  GRN
Sbjct: 449 QKMKEPIALD---GRTLVMTASVGVSLYPNDGEQCEE-----LLKNAGLALHQSKACGRN 500

Query: 254 RVVCFS 259
               FS
Sbjct: 501 NAQFFS 506


>gi|146279345|ref|YP_001169503.1| hypothetical protein Rsph17025_3314 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557586|gb|ABP72198.1| diguanylate cyclase/phosphodiesterase [Rhodobacter sphaeroides ATCC
           17025]
          Length = 659

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 117/257 (45%), Gaps = 25/257 (9%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIG--LTPFYGLEYILVENLSLVIISITIS 79
            S   FM++ +   S+     I +A IF F  G     +    Y +V    L   + T  
Sbjct: 141 LSGGAFMLHRAFVASLAYVWTILLAVIFSFQFGGWAAAWPVTAYAIVYGSYLAYFTYTAG 200

Query: 80  LLLGYISGSI------LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------N 126
                   S+      ++ L  + +   +L+ ID  +GLLN  AF  +L +         
Sbjct: 201 RTARQRDESVAALSDAVQSLQQARDENHRLANIDFATGLLNRKAFHEALQASVAHEALSR 260

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AA 184
           E   ++  D+D FK +ND +GH VGDK++A L+ +L         +GR+GG+EFA     
Sbjct: 261 EPFGLLLLDLDRFKTVNDLYGHGVGDKLLAELAQRLRGALARRDIIGRVGGDEFAVILRD 320

Query: 185 LGSSEQEAAILANDLRKIIENSQIN---ISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
           +  +E  AA+    L+++    ++    I SG SI   +  G      ++P + ++ +AD
Sbjct: 321 VADAETTAAVSGRLLKELNRPVRLGGPIIRSGASIGAALCPGDG----RDP-ADLMLKAD 375

Query: 242 QALYVAKKSGRNRVVCF 258
            AL  AK+ GR R + F
Sbjct: 376 LALNRAKEEGRGRAMQF 392


>gi|317402690|gb|EFV83243.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(S) [Achromobacter xylosoxidans C54]
          Length = 858

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 89/169 (52%), Gaps = 10/169 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI QL+  D L+GL N +         I+      ++++++F D+D FKQ+ND  GHP+G
Sbjct: 428 RIRQLAFYDELTGLPNRNLLLAQAEQAIARAEPERKRVAVLFLDLDRFKQVNDTLGHPIG 487

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++  ++ +L  +      VGRL G+EF    L    +   + A     ++  S   ++
Sbjct: 488 DALLRDIAQRLRRLARATDIVGRLSGDEF--VMLMPDFEHGRLTAAAEHILVSLSHPFVA 545

Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            G +++ ++S GI+        + T++  AD A+Y AK +GRNR+  FS
Sbjct: 546 GGITLNPSVSIGISVFPENGRDMDTLLRHADMAMYQAKTAGRNRISFFS 594


>gi|37678681|ref|NP_933290.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37197421|dbj|BAC93261.1| GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 626

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 21/173 (12%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDIDYFKQINDNFGHP 149
           R+  LS  D L+ + N   F   L  +   +          +   DIDYFK++ND  GH 
Sbjct: 460 RLRNLSERDELTQIWNRRKFEQQLAQHTSLIERYPATPMACLALVDIDYFKRVNDEQGHD 519

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+VI  ++  L         + R+GGEEFA     ++   A ++ N LR       + 
Sbjct: 520 EGDRVIREVAKILQNGLRNTDVLARVGGEEFAIIMPHTTVSAAEVVLNRLR-------VA 572

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VCFSD 260
           +S    + +TIS G  E       ST+ Y+ AD ALY +K SGRN+V +C++D
Sbjct: 573 VSISKQVDVTISVGYTELTSN---STLSYKCADIALYDSKSSGRNKVSLCYND 622


>gi|315181625|gb|ADT88538.1| hypothetical regulatory components of sensory transduction system
           [Vibrio furnissii NCTC 11218]
          Length = 321

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 95/191 (49%), Gaps = 24/191 (12%)

Query: 87  GSILKELFISYNRISQLSRI-------DCLSGLLNHS-------AFISSLGSYNEKLSIV 132
            ++ +EL  +  ++ +L+RI       D L+ + N           IS  G +   LS++
Sbjct: 128 ANMRRELKRTSAKLEELNRILQHQANEDGLTQVFNRRFMDEKLREMISWHGRHEMALSVI 187

Query: 133 FFDIDYFKQINDNFGHPVGDK---VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            FD+D+FK  NDN+GH  GD+    IA  +++L    G   FVGR GGEEF      +  
Sbjct: 188 LFDVDHFKPFNDNYGHIEGDRCLHTIAQAANKLFCRSGE--FVGRYGGEEFLILLTNTDV 245

Query: 190 QEAAILANDLRKIIENSQINIS-SGPSIHITISAG---IAERCHKEPISTIIYRADQALY 245
           + A   A  ++  IE+     + S  + HITIS G   I    H E ++ +  +AD ALY
Sbjct: 246 EGARAAAERIQDSIEHIHYPHAFSAVADHITISQGVVTITPDGH-ETLAQVYEQADNALY 304

Query: 246 VAKKSGRNRVV 256
            AK  GRNR V
Sbjct: 305 QAKSHGRNRYV 315


>gi|296388186|ref|ZP_06877661.1| hypothetical protein PaerPAb_08521 [Pseudomonas aeruginosa PAb1]
          Length = 726

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 100/186 (53%), Gaps = 22/186 (11%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L +L  ++  + Q++R D L+GL N +AF       + +     + L+++F D+D+FK
Sbjct: 272 ALLNQLDHAHASLRQMARYDSLTGLQNRTAFNEVFVQHLENCRLRGKGLAVMFLDLDHFK 331

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL- 199
           +IND+ GH  GD+++  +S+++  V      V R  G+EF   A  + + EA IL+  L 
Sbjct: 332 RINDSLGHDSGDELLKIVSERIRSVLRDSDVVARFAGDEFCVLADLTQDHEAHILSQRLM 391

Query: 200 RKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRN 253
           +K+ E   ++   G ++ +T S G++      E+C +     ++  A  AL+ +K  GRN
Sbjct: 392 QKMKEPIALD---GRTLVMTASVGVSLYPNDGEQCEE-----LLKNAGLALHQSKACGRN 443

Query: 254 RVVCFS 259
               FS
Sbjct: 444 NAQFFS 449


>gi|254000362|ref|YP_003052425.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase [Methylovorus sp. SIP3-4]
 gi|253987041|gb|ACT51898.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Methylovorus sp. SIP3-4]
          Length = 435

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 11/165 (6%)

Query: 98  NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           ++++ L++ D L+ L N        S  I+       +L+++F D+D FKQIND  GH V
Sbjct: 265 SKMAHLAQHDYLTNLPNRMLLNDRLSQAITLAERGTSQLAVLFMDLDNFKQINDTLGHVV 324

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQIN 209
           GD ++  ++ +L+ +      V R GG+EF      S   ++AA++A+ + + +E    +
Sbjct: 325 GDAILQSVAKRLIELVRKSDTVSRQGGDEFLMLVDESKHGEDAALIASKILRALEKP--H 382

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
              G  +H+T S GI+   H      T+I  AD A+Y AKK GRN
Sbjct: 383 AIGGKELHLTASIGISLYPHDGRDAQTLINHADSAMYEAKKQGRN 427


>gi|237507329|ref|ZP_04520044.1| eal/ggdef domain protein [Burkholderia pseudomallei MSHR346]
 gi|234999534|gb|EEP48958.1| eal/ggdef domain protein [Burkholderia pseudomallei MSHR346]
          Length = 688

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 4/127 (3%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186
           KL+I+F D+D FK IN + GHP GD+V+   S +L+        V RLGG+EF       
Sbjct: 288 KLAILFMDLDGFKTINGSLGHPAGDEVLKTFSQRLLCCVRDGDIVARLGGDEFVVLLESV 347

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245
           SS+ EAA +A D+ + +   + N   G ++ +T S GIA      +   T++  AD A+Y
Sbjct: 348 SSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGDTADTLLRHADAAMY 405

Query: 246 VAKKSGR 252
            AK+ GR
Sbjct: 406 AAKRGGR 412


>gi|254410317|ref|ZP_05024096.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196182523|gb|EDX77508.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 331

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 91/180 (50%), Gaps = 12/180 (6%)

Query: 89  ILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFK 140
           +LK      N+ + +L  +D L+ + N  AF  +L    ++L       S++  DID+FK
Sbjct: 146 VLKAKLEEMNQELQRLVDLDGLTQIANRRAFDQALQQEWKRLAREQAPLSLILCDIDFFK 205

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GH  GD+ +  ++D L      P   V R GGEEF      +S + A  +A  +
Sbjct: 206 AYNDTYGHQAGDECLKQVADILRKAAKRPADVVARYGGEEFVVILPNTSLRGAMQVAESI 265

Query: 200 R-KIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R K+   + ++  SG S  +T+S G+A      K     +I  ADQALY AK  GR+RVV
Sbjct: 266 RSKLKSRAIVHEGSGVSKFVTLSCGVAGVIPPPKTTPDRLIAEADQALYKAKVEGRDRVV 325


>gi|34499192|ref|NP_903407.1| hypothetical protein CV_3737 [Chromobacterium violaceum ATCC 12472]
 gi|34105043|gb|AAQ61399.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 382

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 8/175 (4%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGH 148
           +  ++ +L+  D L+G  N  A    L    E         S+   D+D+FKQ+ND FGH
Sbjct: 208 ALQQMKKLAESDALTGCYNQRALRERLDRCAEASLASGRPWSLAMLDLDHFKQVNDTFGH 267

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+++   +  +         + R GGEEFA  A      E   L  ++R ++  S +
Sbjct: 268 LAGDRLLCQTARLIESRLPEGCILARYGGEEFAVLAPDRDGLELLSLMEEVRTLLSTSSL 327

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                  +  T+S G+      + +   + RAD ALY AK+ GRNRV   S +++
Sbjct: 328 EGLPVGRVQ-TMSVGVVGCQPGDLVRQCLKRADVALYRAKQGGRNRVCLASPMDD 381


>gi|168210848|ref|ZP_02636473.1| GGDEF domain protein [Clostridium perfringens B str. ATCC 3626]
 gi|4589924|dbj|BAA76930.1| hypothetical 34.4-kDa protein [Clostridium perfringens]
 gi|170711147|gb|EDT23329.1| GGDEF domain protein [Clostridium perfringens B str. ATCC 3626]
          Length = 299

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 73/129 (56%), Gaps = 4/129 (3%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSS 188
           +++  DID FK++ND +GH VGDK++   +  L   +     ++GR GGEEF      ++
Sbjct: 172 TVIMTDIDSFKKVNDTYGHLVGDKILRGFAKVLNNNIRENSDWIGRYGGEEFIIVLNNTN 231

Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVA 247
            +    +A  LRKIIE  +++   G  S+ IT S G+ E   KE     I  AD+ LY+A
Sbjct: 232 LKNGVKVAEKLRKIIE--KMSFDYGDLSLKITSSFGVCEVSEKEDPFDTIKNADEKLYMA 289

Query: 248 KKSGRNRVV 256
           K +GRN+ V
Sbjct: 290 KMTGRNKTV 298


>gi|166712733|ref|ZP_02243940.1| putative signal transduction protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 547

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 89/180 (49%), Gaps = 20/180 (11%)

Query: 96  SYNRISQLSRI---DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145
           S NR+  L+     D L+G+ N     ++L    E        LSI F D+D FK++ND 
Sbjct: 357 SENRMRHLAEQASRDALTGVFNRHQLGTALTHEFELASRQGWPLSIAFIDLDEFKRVNDA 416

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKII 203
            GH VGD+V+   +  L  +  T   V R GGEEF    L ++  ++A++  +  L +  
Sbjct: 417 HGHLVGDEVLRNFAQTLQRLVRTSDLVARYGGEEF-LVILPNTPADSALMVIERILTETA 475

Query: 204 ENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 +  GP +HIT SAG+A     ER   E I  ++  AD  LY +K  GRNRV  +
Sbjct: 476 RTPMAQLPGGP-LHITFSAGLATHGGVER-QFESIEHLLQAADSTLYRSKHRGRNRVTAY 533


>gi|27364103|ref|NP_759631.1| sensory box/GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|27360221|gb|AAO09158.1| Sensory box/GGDEF family protein [Vibrio vulnificus CMCP6]
          Length = 626

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 21/173 (12%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDIDYFKQINDNFGHP 149
           R+  LS  D L+ + N   F   L  +   +          +   DIDYFK++ND  GH 
Sbjct: 460 RLRNLSERDELTQIWNRRKFEQQLAQHTSLIERYPATPMACLALVDIDYFKRVNDEQGHD 519

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+VI  ++  L         + R+GGEEFA     ++   A ++ N LR       + 
Sbjct: 520 EGDRVIREVAKILQNGLRNTDVLARVGGEEFAIIMPHTTVSAAEVVLNRLR-------VA 572

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VCFSD 260
           +S    + +TIS G  E       ST+ Y+ AD ALY +K SGRN+V +C++D
Sbjct: 573 VSISKQVDVTISVGYTELTSN---STLSYKCADIALYDSKSSGRNKVSLCYND 622


>gi|26247677|ref|NP_753717.1| hypothetical protein c1815 [Escherichia coli CFT073]
 gi|91210635|ref|YP_540621.1| hypothetical protein UTI89_C1612 [Escherichia coli UTI89]
 gi|117623593|ref|YP_852506.1| hypothetical protein APECO1_493 [Escherichia coli APEC O1]
 gi|227886222|ref|ZP_04004027.1| sensory box-containing diguanylate cyclase [Escherichia coli 83972]
 gi|237705371|ref|ZP_04535852.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|300971645|ref|ZP_07171518.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1]
 gi|301046188|ref|ZP_07193362.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1]
 gi|26108079|gb|AAN80279.1|AE016760_138 Hypothetical protein ydaM [Escherichia coli CFT073]
 gi|91072209|gb|ABE07090.1| hypothetical protein YdaM [Escherichia coli UTI89]
 gi|115512717|gb|ABJ00792.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|226900128|gb|EEH86387.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|227836426|gb|EEJ46892.1| sensory box-containing diguanylate cyclase [Escherichia coli 83972]
 gi|294493987|gb|ADE92743.1| sensory box-containing diguanylate cyclase [Escherichia coli
           IHE3034]
 gi|300301845|gb|EFJ58230.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1]
 gi|300411131|gb|EFJ94669.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1]
 gi|307627085|gb|ADN71389.1| hypothetical protein UM146_10070 [Escherichia coli UM146]
 gi|315289073|gb|EFU48471.1| diguanylate cyclase domain protein [Escherichia coli MS 110-3]
          Length = 430

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 77/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++ISS P    T
Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISSLPRF--T 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|330970419|gb|EGH70485.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 332

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 9/167 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFIS------SLGSYN-EKLSIVFFDIDYFKQINDNFGHPV 150
           N + +L+  D L+   N   F         L   N   L+ +  DID FK +ND +GH  
Sbjct: 165 NELQRLATTDVLTQSSNRRHFFECAQREFELARLNGTPLAFLLLDIDDFKLVNDTYGHQE 224

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  +++            GR+GGEEFAA   G +   A  +A  L++ I+      
Sbjct: 225 GDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCAPDMAMQIAERLQREIQRQNFQ- 283

Query: 211 SSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
           S+G +  IT S G+      +P + T+  RAD A+Y AK+ G+N++V
Sbjct: 284 SAGTTFSITASQGLTNLGPDDPSLETLYGRADAAMYQAKRQGKNQIV 330


>gi|313108659|ref|ZP_07794658.1| hypothetical protein PA39016_001400021 [Pseudomonas aeruginosa
           39016]
 gi|310881160|gb|EFQ39754.1| hypothetical protein PA39016_001400021 [Pseudomonas aeruginosa
           39016]
          Length = 726

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 100/186 (53%), Gaps = 22/186 (11%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L +L  ++  + Q++R D L+GL N +AF       + +     + L+++F D+D+FK
Sbjct: 272 ALLNQLDHAHASLRQMARYDSLTGLQNRTAFNEVFVQHLENCRLRGKGLAVMFLDLDHFK 331

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL- 199
           +IND+ GH  GD+++  +S+++  V      V R  G+EF   A  + + EA IL+  L 
Sbjct: 332 RINDSLGHDSGDELLKIVSERIRSVLRDSDVVARFAGDEFCVLADLTQDHEAHILSQRLM 391

Query: 200 RKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRN 253
           +K+ E   ++   G ++ +T S G++      E+C +     ++  A  AL+ +K  GRN
Sbjct: 392 QKMKEPIALD---GRTLVMTASVGVSLYPNDGEQCEE-----LLKNAGLALHQSKACGRN 443

Query: 254 RVVCFS 259
               FS
Sbjct: 444 NAQFFS 449


>gi|209965838|ref|YP_002298753.1| hypothetical protein RC1_2560 [Rhodospirillum centenum SW]
 gi|209959304|gb|ACI99940.1| GGDEF domain protein [Rhodospirillum centenum SW]
          Length = 315

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 82/165 (49%), Gaps = 17/165 (10%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIA 156
           S ID L+GL N +     L     +         I   D+D FK +ND +GH  GD+V+ 
Sbjct: 144 SSIDPLTGLRNRTGLYEELEREMNRFRRTGRPFCIALCDLDRFKSVNDTYGHDAGDRVL- 202

Query: 157 FLSDQLVVVFGTPMFVG--RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
            ++    V  G   F    RLGGEE       +S  E A +   LR  I   Q+ I+ G 
Sbjct: 203 -VATAGAVNRGIRNFDEAFRLGGEEILILLKDASLTEGAGVLERLRADIAAQQVLIADGR 261

Query: 215 SIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           SI +T S G+AE     H E + +I   AD+ALY AK++GRNRVV
Sbjct: 262 SISVTASFGVAEADLTVHPEDLPSI---ADRALYEAKRAGRNRVV 303


>gi|120599088|ref|YP_963662.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|146292841|ref|YP_001183265.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
 gi|120559181|gb|ABM25108.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|145564531|gb|ABP75466.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
 gi|319426153|gb|ADV54227.1| diguanylate cyclase [Shewanella putrefaciens 200]
          Length = 341

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 104/214 (48%), Gaps = 12/214 (5%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILK---ELFISYNRISQLSR---IDCLSGL 112
           + +E +L    SLV  S  I     + +G + K   E+     ++ Q  +    D L+G 
Sbjct: 128 FSVEQVLDLVRSLVKESDNIRSSTEFFTGQLQKAQTEIDALKKKLEQTEKDVLYDALTGC 187

Query: 113 LNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
           LN  AF +     L    E   ++  DID+FK  ND++GH +GD+V+  ++ +L      
Sbjct: 188 LNRRAFDADFSGMLTQAPEGTCVILVDIDHFKVFNDSYGHQMGDQVLRAVAKRLQESCRD 247

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA--GIAE 226
            + + R GGEEFA     S  + A  LA  +R+ +E   +           ISA  G+A+
Sbjct: 248 GIKLYRFGGEEFAILVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDERIDNISASFGVAQ 307

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              K+    +I +AD+ LY AK+ GRNRV+  S+
Sbjct: 308 WQEKQTGLQLIEKADKLLYEAKRLGRNRVMPISN 341


>gi|254469913|ref|ZP_05083318.1| response regulator PleD [Pseudovibrio sp. JE062]
 gi|211961748|gb|EEA96943.1| response regulator PleD [Pseudovibrio sp. JE062]
          Length = 352

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 9/156 (5%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N   F  SL          +  LS++  DID+FKQ NDN+GH  GD+V+  ++
Sbjct: 180 DELTTLNNRKHFDQSLVRAVKEAEESHAPLSLLISDIDHFKQFNDNYGHQTGDQVLRLVA 239

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSI-H 217
             +           R GGEEF      ++ ++A ++A  +RK ++    +  S+G ++  
Sbjct: 240 LAVKQNVKNNDIACRYGGEEFGIILPRTTIEDAKVIAEKIRKNVVAKELVKRSTGENLGR 299

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           ITIS GI+     +   +++ RAD ALY AKK+GRN
Sbjct: 300 ITISIGISTFRPGDSAESMVSRADLALYAAKKAGRN 335


>gi|291526122|emb|CBK91709.1| diguanylate cyclase (GGDEF) domain [Eubacterium rectale DSM 17629]
          Length = 860

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 10/170 (5%)

Query: 99  RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI   +  D L+GL N        + FI      + + ++++ D+D FK IND  GH  G
Sbjct: 430 RIENQANNDFLTGLYNRMRCEQDLAKFIDDSVKNDTRGAMIYIDLDDFKHINDGLGHQYG 489

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++  +S+ L  V G      R+GG+EF     GSS      + ND+++I         
Sbjct: 490 DVLLKAISNSLTQVKGIENHCYRMGGDEFIVIVTGSSVDRLESIINDIQQIFVRPW--FL 547

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            G   + TISAG+A        +  +I RAD AL+ AKK G+NR+  +++
Sbjct: 548 KGEDYYCTISAGVAFFPTDASTVEDVIRRADIALFNAKKEGKNRIEFYNE 597


>gi|238759046|ref|ZP_04620216.1| Sensory box protein [Yersinia aldovae ATCC 35236]
 gi|238702723|gb|EEP95270.1| Sensory box protein [Yersinia aldovae ATCC 35236]
          Length = 348

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 97/202 (48%), Gaps = 15/202 (7%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           LE + ++N SL  +    ++ L   +  + ++L I  N    LS  D L+   N      
Sbjct: 152 LEKLELKNKSLEALVEERTVELREANLRLQQQLKIKKN----LSETDVLTSTANRYLLEK 207

Query: 121 SLG-SYN------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L   YN      + LS++  D+D FK IND +GH VGD  +  + D +         +G
Sbjct: 208 VLKHEYNRAKRFCQPLSLLSLDVDNFKSINDKYGHIVGDLALTHIVDIIRNNIREVDVLG 267

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GG+EF      +   EA  +A  +RK++E     I    +I++T+S GI E    E  
Sbjct: 268 RWGGDEFMIVLPNTQLDEAKAIAEKIRKLVE----TIPVDSNINVTMSLGIVELQQNESQ 323

Query: 234 STIIYRADQALYVAKKSGRNRV 255
             ++ RAD+ LY AK +G+N +
Sbjct: 324 DQLLIRADKMLYNAKAAGKNTI 345


>gi|218689330|ref|YP_002397542.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein
           [Escherichia coli ED1a]
 gi|218426894|emb|CAR07749.2| putative diguanylate cyclase, GG[D/E]EF domain signalling protein
           [Escherichia coli ED1a]
          Length = 410

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 77/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++ISS P    T
Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISSLPRF--T 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409


>gi|188581340|ref|YP_001924785.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium populi BJ001]
 gi|179344838|gb|ACB80250.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium populi BJ001]
          Length = 700

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 21/227 (9%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL--GYISGSI-LKELFIS 96
           A ++F+A+     +GL      E +  E     I+S+T   L   G++S  + + E    
Sbjct: 197 AALVFVADHLRPDLGLDSSAVSEIVHRER----ILSVTTRRLAAGGWVSTFVDVTERRQF 252

Query: 97  YNRISQLSRIDCLSGLLN----HSAFISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVG 151
             +I  L++ D L+ L N    H A   +L S   E  ++++ D+D FK IND FGH  G
Sbjct: 253 ERQIQHLAQHDLLTDLANRATLHQALTETLASETWESCAVLYIDLDRFKPINDTFGHAAG 312

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQIN 209
           D+++  ++ +L         + RLGG+EFA     +  Q    LA   ++I+E  N    
Sbjct: 313 DQLLQEVARRLRRTVRAQDVIARLGGDEFALILRPADPQH---LAGTAQQILEALNQPYA 369

Query: 210 ISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNR 254
           +   P I I  S GIA      ++P   ++  AD ALY AKK GRNR
Sbjct: 370 VRRLP-IRIGASIGIAAAPLTGRDP-DLLLRNADLALYEAKKEGRNR 414


>gi|88861123|ref|ZP_01135757.1| response regulator/GGDEF domain protein [Pseudoalteromonas tunicata
           D2]
 gi|88816845|gb|EAR26666.1| response regulator/GGDEF domain protein [Pseudoalteromonas tunicata
           D2]
          Length = 412

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 3/127 (2%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +   DID+FK INDN+GH  GD+V+  L+D   + F +   + RLGGEEFA     S+  
Sbjct: 288 LAMIDIDFFKAINDNYGHDAGDEVLKGLADHFRLHF-SEHLIARLGGEEFAVYFKQSTSA 346

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           EA+      R  +E +  + SS   I  T+S G+A+  ++  +  I+  ADQ LY AK  
Sbjct: 347 EASQQLEAFRMSVELNSPSFSSK-KIPFTLSIGLAD-SNETNVDAILKIADQYLYQAKSD 404

Query: 251 GRNRVVC 257
           GRNR++ 
Sbjct: 405 GRNRLIT 411


>gi|325917089|ref|ZP_08179322.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
           protein [Xanthomonas vesicatoria ATCC 35937]
 gi|325536665|gb|EGD08428.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
           protein [Xanthomonas vesicatoria ATCC 35937]
          Length = 713

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 9/165 (5%)

Query: 104 SRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GL+N           I    S     ++ F D+D+FK +ND FGH VGDK + 
Sbjct: 282 ARHDALTGLINRREIERRLLHLIEPPQSPQLCHALCFVDLDHFKLVNDTFGHAVGDKFLC 341

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             +D + +      ++GRLGG+EFA     +   +A  L   +  ++     +   G  +
Sbjct: 342 HFADVITMQLRPGDWLGRLGGDEFAILLANTDLAQAQALLERMHGVL-GQPWSHQGGRPL 400

Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + S G+ E R     ++ ++  AD A Y AK+ GRNR+ CF +
Sbjct: 401 TPSCSFGVVEIRQGASDLNALMTAADLACYAAKEEGRNRIRCFGE 445


>gi|296284370|ref|ZP_06862368.1| sensory box/GGDEF family protein [Citromicrobium bathyomarinum
           JL354]
          Length = 785

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 90/178 (50%), Gaps = 15/178 (8%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
           GS + E   S  +I+ L+R D L+GL N      SLG        +  + + +  D+D F
Sbjct: 340 GSDVTEQRKSSEKIAYLARYDTLTGLPNRLMLNESLGEAMDEARQWRRRCAFIMLDLDRF 399

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILAND 198
           K +ND+ GH +GD+++  +S +L  + G     GRLGG+EFA     + +  A   LA  
Sbjct: 400 KAVNDSLGHQIGDRLLEQVSRRLSELTGENEICGRLGGDEFAIVMRDAPDSCAVDALA-- 457

Query: 199 LRKIIEN-SQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRN 253
            RK+IE  SQ       ++ +  SAG  +A R  K  +  ++  AD ALY AK  GR 
Sbjct: 458 -RKVIERLSQPYEVDQHTLFVGASAGSALAPRDGKT-VEELMRNADLALYRAKDGGRG 513


>gi|270262528|ref|ZP_06190799.1| GGDEF domain protein [Serratia odorifera 4Rx13]
 gi|270043212|gb|EFA16305.1| GGDEF domain protein [Serratia odorifera 4Rx13]
          Length = 319

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 13/196 (6%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           + ++ +++ + L++ Y++         SY         D L+ L N   F   L      
Sbjct: 124 IGMLCVAVGVYLIVHYVNDKYADASIDSYR--------DELTNLPNRRYFRRVLLDLQNV 175

Query: 129 LSIVFF-DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
              VFF DID FK+IND +GH +GD+V+      L  ++   +   R+GGEEFA     S
Sbjct: 176 NHYVFFIDIDLFKKINDKYGHDIGDEVLRAFGQMLGELYENNVIAARIGGEEFAVIVQTS 235

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
             +EA   A    KI+  ++  +     + +T+S G   +   E   +++ R D ALY A
Sbjct: 236 VFEEAQSTA---EKILTRAR-ELMVNDEVRLTVSIGAGNKRENESQESLLKRVDIALYQA 291

Query: 248 KKSGRNRVVCFSDIEN 263
           K  GRNR+   S  E+
Sbjct: 292 KSWGRNRIEWASSPEH 307


>gi|209518860|ref|ZP_03267673.1| diguanylate cyclase [Burkholderia sp. H160]
 gi|209500745|gb|EEA00788.1| diguanylate cyclase [Burkholderia sp. H160]
          Length = 522

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 22/166 (13%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N       L          N+ LS++F D+D+FK  ND +GH  GD+V+  ++
Sbjct: 350 DPLTGLSNRRVLDKRLDDEWRRARRDNKPLSVLFIDVDHFKHFNDTYGHESGDEVLVAVA 409

Query: 160 DQLVVVFGTPM---FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
           D   +  G       V R GGEEFA     ++ Q A  +A  +R+ +E+  +        
Sbjct: 410 D--CIASGARRSVDLVARYGGEEFAVVLPDTTAQGAFAVAEKIRRKVESEVVVGGPDAPQ 467

Query: 217 HITISAGIAERCHKEPIST-------IIYRADQALYVAKKSGRNRV 255
            +T+S G A      P +T       ++  ADQ LYVAK+ GRNR 
Sbjct: 468 AVTVSVGCATAL---PAATDGGNGLDLLAAADQQLYVAKEQGRNRT 510


>gi|24215627|ref|NP_713108.1| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
 gi|24196784|gb|AAN50126.1| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
          Length = 315

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 97/209 (46%), Gaps = 38/209 (18%)

Query: 82  LGYISGSILKELFISYNRISQLS--------------RIDCLSGLLNHSAFISSLG---- 123
           L YI+G  + E   S  +ISQL+                D L+ L N  AF  +L     
Sbjct: 106 LVYITGRDITETIESNRKISQLATELKDANDKLFEQASTDSLTKLKNRRAFNEALNHLVH 165

Query: 124 -SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            S  +K  LS++  D D+FK  ND FGH  GDK++  L+D L         + R GGEEF
Sbjct: 166 FSQKQKSPLSLLMIDADHFKDYNDTFGHLEGDKILIILADLLTKALRKGDVLARYGGEEF 225

Query: 181 AAAALGSSEQEAAILANDLRKIIE--NSQINISSGPSIHITISAGIA--------ERCHK 230
             A   +SE E   ++  L + +   N +  I       IT+S G A        +  + 
Sbjct: 226 IVALPLTSEDETIDISERLLQTVREFNWEKRI-------ITVSVGAATYDFNSNSKNINL 278

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           E    +I +AD+ALY +K +GRNR+  FS
Sbjct: 279 EYSINLIEQADKALYCSKVNGRNRITHFS 307


>gi|327483913|gb|AEA78320.1| GGDEF family protein [Vibrio cholerae LMA3894-4]
          Length = 372

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 16/180 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L+    ++  LS  D L+GL N    +  L           +    V  DID FK +N
Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH VGDKV+  +++ L   F +   V RLGG+EF      ++      +A  + + I
Sbjct: 253 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETNTAGGVYIAEQVCRAI 312

Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   I++ +      ++S G+A      + H E    ++  ADQA+Y+AK SG+NRV  F
Sbjct: 313 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHE----LLRAADQAVYLAKNSGKNRVCAF 368


>gi|312962062|ref|ZP_07776559.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Pseudomonas fluorescens
           WH6]
 gi|311283872|gb|EFQ62456.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Pseudomonas fluorescens
           WH6]
          Length = 1092

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 63/203 (31%), Positives = 100/203 (49%), Gaps = 19/203 (9%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
           + ++ T  LLL     S+LK    +  +I  L+  D L+ L N +         I+ L  
Sbjct: 632 ITLNETPCLLLTARDVSLLKN---AQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKR 688

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           +N + +++F D+D+FK IND+ GHPVGD V+  ++ +L         V RLGG+EF    
Sbjct: 689 HNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIVTARLEASVRMEDTVARLGGDEFVVLL 748

Query: 185 LG------SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTII 237
            G         ++   L + LR+++  S+     G  + +T S G+A    H    + ++
Sbjct: 749 SGLDGSRTQVSKQVQALTDTLRELL--SEPMFLDGQRLQVTPSIGVALIPDHGSTPADLL 806

Query: 238 YRADQALYVAKKSGRNRVVCFSD 260
            RAD ALY AK SGRN    F +
Sbjct: 807 KRADIALYRAKDSGRNTTQMFHN 829


>gi|308050516|ref|YP_003914082.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
 gi|307632706|gb|ADN77008.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
          Length = 521

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 87/193 (45%), Gaps = 13/193 (6%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS----- 124
           S+  +   ++ L    SG   K+  I   R++ L   D L+ L N +A    L       
Sbjct: 331 SMEKMRKELTALASEASG--YKDQLIEQQRLNML---DALTQLPNRAALDERLKREYRNV 385

Query: 125 --YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
             Y   L +   DID+FK IND+FGH  GDK +  ++  L        FV R GGEEF  
Sbjct: 386 RRYGNDLWVAVADIDHFKGINDSFGHTTGDKTLQVVAMALKNSLRKGEFVARYGGEEFVL 445

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
                S ++   + N  R+ I+       +   + ITIS G A     E +     RAD 
Sbjct: 446 LLPDVSAEQVGQILNRTRERIKAIPFKFRN-EKLSITISIGAALVTGNETMQETFERADA 504

Query: 243 ALYVAKKSGRNRV 255
           ALY AK+ GR+RV
Sbjct: 505 ALYRAKRKGRDRV 517


>gi|298488422|ref|ZP_07006453.1| predicted diguanylate cyclase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157047|gb|EFH98136.1| predicted diguanylate cyclase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 359

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 118/233 (50%), Gaps = 21/233 (9%)

Query: 31  FSIFFSIFIATVIFIANIFL--FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG- 87
            S+FF  FI  V   A I+L  +   LT   G+++     LS V + I+ +LL G ++  
Sbjct: 108 MSVFFVKFIDYVAAAALIWLIMWQTDLTAV-GVDH---APLSYVFL-ISSTLLGGSLNAT 162

Query: 88  --SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVF--FDIDYFK 140
             S++ +   + +R  +LS  D L+   N  A ++SL    + ++K S+ F   D+D FK
Sbjct: 163 FLSLVMQTMAASDRYQKLSETDTLTNAPNRRALVTSLDNALTSDDKSSLWFAMLDLDNFK 222

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            INDN GH VGD V+   +  +    G   F GRLGGEEF       S   AA     + 
Sbjct: 223 SINDNHGHDVGDNVLICFATLIKSTTGLVSF-GRLGGEEFGVML---SAANAADAIAAMD 278

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            ++ ++Q +      +  + SAGIA     + ++ ++  AD+ LY+AK+SGR 
Sbjct: 279 HLLMHAQKD--QAAKMPYSFSAGIASLARAKNVNDLLKEADENLYLAKRSGRQ 329


>gi|295097752|emb|CBK86842.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 694

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 104/204 (50%), Gaps = 17/204 (8%)

Query: 64  ILVENLSLVIISIT--ISLLLGYISG--SILKELFISYNR-ISQLSRIDCLSGLLNH--- 115
           ILV  ++L I+ IT  +S+    +    S+L       NR ++QL+  D L+ L N    
Sbjct: 216 ILVSVVALAILGITLLVSMFDARLQARTSLLASSLAEANRELAQLALHDTLTRLPNRILL 275

Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  IS         +++F D+D FK +ND +GH VGDK++  ++ +L++       
Sbjct: 276 EDRLDQAISKADREGSPFALMFMDLDGFKTVNDAYGHDVGDKLLVAVTQRLLLQLKGQYT 335

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHK 230
           + R+GG+EF   A  ++  +AA LAN L ++I++        P  + +T+S GIA   H 
Sbjct: 336 LARIGGDEFVLLAETATPDDAASLANSLVRVIDSP---FHLDPYELMVTLSIGIALYPHD 392

Query: 231 -EPISTIIYRADQALYVAKKSGRN 253
            +    +++ AD A+Y  K  GRN
Sbjct: 393 GKTDRELMFNADAAMYHTKHMGRN 416


>gi|288923298|ref|ZP_06417434.1| diguanylate cyclase [Frankia sp. EUN1f]
 gi|288345358|gb|EFC79751.1| diguanylate cyclase [Frankia sp. EUN1f]
          Length = 431

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 97/207 (46%), Gaps = 18/207 (8%)

Query: 66  VENLSLVIISITISLLLGYISGSILK-------ELFISYNRISQLSRIDCLSGLLNHSAF 118
           +E + L+   + +SL    + GS+ +       EL  +  R+ QLS  D L+GL N    
Sbjct: 206 LEGIILIAGQLAVSLDNARVYGSLERKVAERTEELAAANRRLEQLSVTDPLTGLANRRHL 265

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L         +   L++   DID FK  ND+FGH  GD+ +  ++  L         
Sbjct: 266 DEVLDIEWHRAQRHTTPLALAMIDIDRFKSYNDHFGHAAGDRCLQRVAACLAAGTRDTDL 325

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIAE--RC 228
             R GGEEFA    G+   +A+ +A+ LR  + E ++ +  +   + +T+S G+A     
Sbjct: 326 TARYGGEEFAVVMPGADTGDASRIAHRLRSAVAELTEPHPVTTNQV-VTVSIGVASIAPT 384

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRV 255
             E    ++  AD ALY AK  GRN+V
Sbjct: 385 PTEEAKALVELADSALYRAKSGGRNQV 411


>gi|21114786|gb|AAM42789.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66572311|gb|AAY47721.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 326

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 15/178 (8%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           F +Y  +   ++ D L+GL N   F          ++ G+    + +   DID+FK++ND
Sbjct: 135 FQNYRSLLDDAQRDALTGLRNRKTFDDMILRLFAANADGAQENAVWLGIVDIDHFKRVND 194

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-II 203
            FGH  GD+V+  ++  +   F     + R GGEEF     G     A  L    R+ + 
Sbjct: 195 TFGHLYGDEVLLLVAQLMQRCFRQDDLLFRFGGEEFVIVLRGVDRDTAVSLFERFRRAVA 254

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E+S   + +     +T+S GI E      +S ++  AD+ALY AK+ GRNR    S++
Sbjct: 255 EHSFPQVGT-----VTLSTGIVELSDGRLVSQMLDEADKALYWAKQHGRNRAAVHSEL 307


>gi|86357223|ref|YP_469115.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|86281325|gb|ABC90388.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
          Length = 448

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 96/176 (54%), Gaps = 20/176 (11%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGH 148
           S   +  ++  D L+G+LN    +    +  E       K++++ FD+D+FK++ND FGH
Sbjct: 239 SERHLRTMTLTDSLTGVLNRRGLLGYFDAIQERAHNEQRKVAVILFDLDHFKRVNDRFGH 298

Query: 149 PVGDKVI---AFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GD V+   A ++ Q +     P  + GR+GGEEFAA A  + + EA  +A  +R   E
Sbjct: 299 QSGDAVLTAFARMARQYI-----PHHIFGRMGGEEFAAFAAVADQTEAEAIAEAIRT--E 351

Query: 205 NSQINISSGPSI-HITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
             ++ IS+G +I   T+S GIA     E  I  +I  AD+ALY AK +GRN  V F
Sbjct: 352 FCRLPISTGEAIVPATVSIGIALSSSIEANIDKLISAADRALYAAKAAGRNCTVTF 407


>gi|313623149|gb|EFR93412.1| ggdef domain-containing protein [Listeria innocua FSL J1-023]
          Length = 219

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 100/202 (49%), Gaps = 15/202 (7%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-- 123
           VE +   ++    +LL+ Y    I K   +  N +++ +  D L+ L N   F       
Sbjct: 15  VEIIEYFLLFFVTALLVFYACNYIDKSNLVIQN-LTETAMTDSLTNLPNMRFFTQQFAWI 73

Query: 124 -----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGG 177
                   + LS+   DID+FK+IND  GH  G+ V+A  S  L    F       R+GG
Sbjct: 74  FNKSQKRKKALSLFIIDIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGG 133

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPIST 235
           EEFA        ++AA++A+ LR  IE ++   N  SG   ++T+S G+A   +    + 
Sbjct: 134 EEFAVLLQNVGTEQAALIADFLRDEIERAKFPYNPVSG---NVTVSIGVASMGYNYRTTE 190

Query: 236 IIYR-ADQALYVAKKSGRNRVV 256
            ++  ADQALY AK++GRN++ 
Sbjct: 191 SLFEAADQALYQAKQNGRNQIA 212


>gi|188992136|ref|YP_001904146.1| hypothetical protein xccb100_2741 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733896|emb|CAP52102.1| Conserved hypothetical protein with GGDEF domain [Xanthomonas
           campestris pv. campestris]
          Length = 376

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 8/175 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
            +L  L I  +   + +  D L+GL N   F  +L             L +   DID+FK
Sbjct: 200 ELLTRLRIKSDAFERQAHEDALTGLPNRRHFDEALARDLSRARRSGRPLVLAILDIDHFK 259

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND + H  GD V+  +   L           RLGGEEFA     ++ ++A  L   +R
Sbjct: 260 RINDQYSHASGDAVLHDVGVLLTAAARASDLPARLGGEEFALLLSDTTLEQAHALCLRIR 319

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               +++ +      + +T SAG+AE   +E  S+++ RAD ALY AK +GR+R+
Sbjct: 320 AQF-HARHDWGGVEGLQVTFSAGLAELGEEESGSSLMQRADHALYEAKSAGRDRI 373


>gi|299532444|ref|ZP_07045835.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298719529|gb|EFI60495.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 648

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 12/160 (7%)

Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N          FI+        +++ F D+D FK +ND +GH  GD V+  ++
Sbjct: 472 DALTGLANRRFINKQMQQFIALADRDQGTVAVCFIDLDGFKSVNDTYGHDAGDIVLKTVA 531

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS--SGPSIH 217
           ++L     T   V RLGG+EF     G +  E A+    +++ ++  +I I+   G +  
Sbjct: 532 ERLTSAVRTHDCVARLGGDEFVVVLTGRNNHENAV--QTMQRCLDMVRIPIAVEDGHTAI 589

Query: 218 ITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  S GIA     KE   +++ RAD+A+Y+AK +G+ R++
Sbjct: 590 VGCSIGIAYYEGEKESCDSLLERADEAMYLAKNAGKGRII 629


>gi|209542978|ref|YP_002275207.1| diguanylate cyclase/phosphodiesterase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530655|gb|ACI50592.1| diguanylate cyclase/phosphodiesterase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 772

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 91/170 (53%), Gaps = 7/170 (4%)

Query: 96  SYNRISQLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           S  RI Q++  D L+GL N    H      LG+   ++ ++F D+D FK +ND  GH +G
Sbjct: 334 SERRIFQMAHYDILTGLPNRITFHEELDKRLGTPGNRVGLLFVDLDGFKLVNDTRGHRIG 393

Query: 152 DKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D ++  ++ +L     +P   VGRLGG+EFA      + +EAA+LA  +   + +   ++
Sbjct: 394 DILLTQVASRLRATCNSPATVVGRLGGDEFAVLVPHDNAEEAALLAARVVAFL-SEPYDL 452

Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               SI IT S GIA    H E   T++ RAD AL+VAK +G+     F 
Sbjct: 453 DYDRSIQITASVGIALAPLHGEDGETLLSRADIALHVAKTAGKGEFRMFQ 502


>gi|157737153|ref|YP_001489836.1| GGDEF domain-containing protein [Arcobacter butzleri RM4018]
 gi|157699007|gb|ABV67167.1| GGDEF domain protein [Arcobacter butzleri RM4018]
          Length = 371

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 84/164 (51%), Gaps = 10/164 (6%)

Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+L   AF        SS    N + +++FFD+D+FK +ND++GH  GD V++   
Sbjct: 209 DHLTGVLTRRAFSDEIKRIESSYNRINTQYAVIFFDLDHFKILNDSYGHECGDVVLSTFG 268

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII-ENSQINISSGPSIHI 218
             L         VGR GGEEF A    +  +E       ++ I+ ENS   +     I I
Sbjct: 269 KILNKTVREHDLVGRYGGEEFIAIIHFNLNRELLQFLKRIKTIVTENS--FLYQDKKIRI 326

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           T SAG+A R         + +AD  LY AK+SGRN+++  + +E
Sbjct: 327 TFSAGVAIRNSYPTYENALQKADALLYKAKESGRNKILLENGME 370


>gi|117621202|ref|YP_857304.1| diguanylate cyclase/phosphodiesterase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562609|gb|ABK39557.1| diguanylate cyclase/phosphodiesterase domain 1 [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 379

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 91/183 (49%), Gaps = 12/183 (6%)

Query: 78  ISLLLG-YISGSILKELFISYNRIS--QLSRIDCLSGLLNHSAFISSLGS--YNEKLSIV 132
           +S+L+G Y+S   +  L   Y  ++  Q +  D L+GLLN   F+  +      E  ++ 
Sbjct: 198 LSMLMGSYLSTFGVLLLCTQYRALALRQQASHDPLTGLLNRRGFMELMARRRMTEFGALA 257

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D FKQIND  GH +GD+V+A +   L       +   R GGEEF    L   E EA
Sbjct: 258 VLDLDDFKQINDRHGHEMGDRVLAAVGAYLGA--QQELVASRFGGEEFVL--LLPQEDEA 313

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           A       +II +       G  I IT+S G+    H     T+  +AD+ALY AK+ G+
Sbjct: 314 A-QQQRCEQIIRSLAAQDMQG--IGITVSMGLVRCQHSWHFDTLFSQADRALYQAKREGK 370

Query: 253 NRV 255
           NRV
Sbjct: 371 NRV 373


>gi|225593139|gb|ACN96057.1| response regulator [Fischerella sp. MV11]
          Length = 342

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 90/187 (48%), Gaps = 21/187 (11%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDY 138
            G + K+L  +   + QL+  D L+GL N   F          L      +S++  DID+
Sbjct: 157 QGQVYKQLEAANQALQQLANEDGLTGLANRRRFDQYFNSQWLELAQQRSPISLILCDIDF 216

Query: 139 FKQINDNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           FK  ND +GHP GD    KV   L D           V R GGEEFA     + ++ A  
Sbjct: 217 FKLYNDKYGHPAGDICLQKVANVLKD---TAQKYQDLVARYGGEEFAVILPHTHDRGAVH 273

Query: 195 LANDLRKIIENSQINISSGPSIH--ITISAGIA---ERCHKEPISTIIYRADQALYVAKK 249
           +A  ++  +   +I + SG ++   +T+S GIA         P++ +I  AD+ALY AK 
Sbjct: 274 VAAAMQAGVRELEI-VHSGSTVSQFVTLSLGIATIIPNFETSPLA-LIEAADKALYQAKA 331

Query: 250 SGRNRVV 256
            GRNR++
Sbjct: 332 EGRNRII 338


>gi|269963330|ref|ZP_06177661.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831969|gb|EEZ86097.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 475

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 100/191 (52%), Gaps = 12/191 (6%)

Query: 88  SILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIV--FFDIDYFKQ 141
           S L +  +  NR +  + + D L+GL N  +  +S  S    + K+ I   F DID+FK+
Sbjct: 285 SHLVDKVVRKNRELDDMVKHDPLTGLYNRRSLEASFRSLCYQSNKMFIACFFIDIDHFKE 344

Query: 142 INDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND+ GH  GDK +  ++  L      T  +  RLGGEEF   A     +EA    N LR
Sbjct: 345 FNDHRGHLQGDKALQKVAKTLESFAVQTHGYALRLGGEEFVVLAPVHDAREALARGNQLR 404

Query: 201 KIIENSQINISSGPSI-HITISAGI--AERCHKEPI--STIIYRADQALYVAKKSGRNRV 255
             ++  +I     P+I ++TIS GI  +ER   + I  + ++  +D+ALY AK  GR++V
Sbjct: 405 GRVKQLEIIHHDEPTIKYLTISIGISLSERAQADIIDPNRLLDESDEALYAAKDLGRDQV 464

Query: 256 VCFSDIENNTC 266
           V +S+   ++ 
Sbjct: 465 VLYSNESRDSA 475


>gi|332140487|ref|YP_004426225.1| diguanylate cyclase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550509|gb|AEA97227.1| diguanylate cyclase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 299

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
           +S  R+ Q++  D L+GL N + F  S+         ++E  +++  D+D FK +NDNFG
Sbjct: 133 LSLTRVQQMATKDILTGLGNRAGFEQSMTRQLGWAQRHDEPFALLVIDLDNFKFVNDNFG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GDKV+  ++  L  V      V R GG+EF       ++Q+    A  ++  I +S+
Sbjct: 193 HGEGDKVLIHVASHLSNVLRDEDEVFRYGGDEFCCLLDCQTQQQLTCAAQRIQASINSSK 252

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
                G    ++ S G A     + IST+  RAD ALY  K SG+N
Sbjct: 253 YLSQLG----VSTSLGGAIYRDGDTISTLFDRADNALYHVKNSGKN 294


>gi|162148350|ref|YP_001602811.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786927|emb|CAP56510.1| putative signalling protein, GGDEF family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 772

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 91/170 (53%), Gaps = 7/170 (4%)

Query: 96  SYNRISQLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           S  RI Q++  D L+GL N    H      LG+   ++ ++F D+D FK +ND  GH +G
Sbjct: 334 SERRIFQMAHYDILTGLPNRITFHEELDKRLGTPGNRVGLLFVDLDGFKLVNDTRGHRIG 393

Query: 152 DKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D ++  ++ +L     +P   VGRLGG+EFA      + +EAA+LA  +   + +   ++
Sbjct: 394 DILLTQVASRLRATCNSPATVVGRLGGDEFAVLVPHDNAEEAALLAARVVAFL-SEPYDL 452

Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               SI IT S GIA    H E   T++ RAD AL+VAK +G+     F 
Sbjct: 453 DYDRSIQITASVGIALAPLHGEDGETLLSRADIALHVAKTAGKGEFRMFQ 502


>gi|146337354|ref|YP_001202402.1| hypothetical protein BRADO0187 [Bradyrhizobium sp. ORS278]
 gi|146190160|emb|CAL74152.1| conserved hypothetical protein; putative signal peptide, putative
           diguanylate cyclase (GGDEF) domain [Bradyrhizobium sp.
           ORS278]
          Length = 565

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 96/189 (50%), Gaps = 16/189 (8%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
           G   +EL  + +R++ ++ ID LSGL N   F + +             LS++  D+D+F
Sbjct: 368 GQRERELVAANDRLTVMASIDMLSGLANRRGFQNRIDVEWDRAQQTGSDLSLLMIDVDHF 427

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           K  ND +GHP GD  ++ L + L  + G T  F GR GGEEF     G S ++A  +   
Sbjct: 428 KLYNDTYGHPEGDACLSRLGETLAQIAGATTAFAGRYGGEEFCLLLPGMSARQALEIGEL 487

Query: 199 LRKIIENSQINISSGPSIH--ITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNR 254
           +R  +   ++ +    S+H  +T+S G+A       ++   +I  AD ALY AK  GRN 
Sbjct: 488 VRAAV--LELELPHATSVHQCVTVSVGVASTRPNAALTPADLIEAADAALYAAKHRGRNT 545

Query: 255 VVC--FSDI 261
           VV   F D+
Sbjct: 546 VVAHGFGDV 554


>gi|320158085|ref|YP_004190463.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
 gi|319933397|gb|ADV88260.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
          Length = 639

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 93/179 (51%), Gaps = 15/179 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQIND 144
           S+ +EL     R++ ++  D L+GL N S    SL S +++     ++F D+D FK +ND
Sbjct: 466 SVEREL----KRLNYVANHDPLTGLANRSHAFQSLQSEHDQGKDQYLLFLDLDGFKAVND 521

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH +GD ++  ++ +L         V RL G+EF         ++A      + +I+E
Sbjct: 522 QFGHAIGDDLLRVVAKRLKNSVFNRDLVARLAGDEFLIGI-----RDAHTYVPVVERILE 576

Query: 205 NSQINIS-SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260
             Q  IS  G    +T S G++    K+ +S    I+ AD+A+YVAK+ G+N+  C  D
Sbjct: 577 QLQQPISIDGCLCDVTASIGVSHWAVKDGVSLEERIHHADEAMYVAKRLGKNQYCCLQD 635


>gi|315636862|ref|ZP_07892086.1| GGDEF domain protein [Arcobacter butzleri JV22]
 gi|315478692|gb|EFU69401.1| GGDEF domain protein [Arcobacter butzleri JV22]
          Length = 371

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 84/164 (51%), Gaps = 10/164 (6%)

Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+L   AF        SS    N + +++FFD+D+FK +ND++GH  GD V++   
Sbjct: 209 DHLTGVLTRRAFSDEIKRIESSYNRINTQYAVIFFDLDHFKILNDSYGHECGDVVLSTFG 268

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII-ENSQINISSGPSIHI 218
             L         VGR GGEEF A    +  +E       ++ I+ ENS   +     I I
Sbjct: 269 KILNKTVREHDLVGRYGGEEFIAIIHFNLNRELLQFLKRIKTIVTENS--FLYQDKKIRI 326

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           T SAG+A R         + +AD  LY AK+SGRN+++  + +E
Sbjct: 327 TFSAGVAIRNSYPTYENALQKADALLYKAKESGRNKILLENGME 370


>gi|315644687|ref|ZP_07897818.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Paenibacillus vortex V453]
 gi|315279946|gb|EFU43245.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Paenibacillus vortex V453]
          Length = 673

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 90/172 (52%), Gaps = 7/172 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +F   + + +L+  D ++GL N +    F  S  S  EK+S++F D+D FK IND  GH 
Sbjct: 234 MFFDRHVLEKLAYQDTITGLPNRNEMNRFFES-NSETEKISVLFLDLDQFKAINDTLGHH 292

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD ++  + ++L         V R+GG+EF      S    A  LA D+ + I+N  + 
Sbjct: 293 VGDMLVQEVGNRLRQFIQGYQQVFRIGGDEFLIILKQSDPMYAQRLAEDILQKIKN--VY 350

Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              G  +++T S GI+    H    ST++  AD A+Y AK  G+N+   +++
Sbjct: 351 FIDGNELYVTGSIGISIGSVHSSDRSTLLKNADTAMYKAKGLGKNQQCLYTE 402


>gi|313202318|ref|YP_004040976.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase [Methylovorus sp. MP688]
 gi|312441634|gb|ADQ85740.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Methylovorus sp. MP688]
          Length = 435

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 11/165 (6%)

Query: 98  NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           ++++ L++ D L+ L N        S  I+       +L+++F D+D FKQIND  GH V
Sbjct: 265 SKMAHLAQHDYLTNLPNRMLLNDRLSQAITLAERGTSQLAVLFMDLDNFKQINDTLGHVV 324

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQIN 209
           GD ++  ++ +L+ +      V R GG+EF      S   ++AA++A+ + + +E    +
Sbjct: 325 GDAILQSVAKRLIELVRKSDTVSRQGGDEFLMLVDESKHGEDAALIASKILRALEKP--H 382

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
              G  +H+T S GI+   H      T+I  AD A+Y AKK GRN
Sbjct: 383 AIGGKELHLTASIGISLYPHDGRDAETLINHADSAMYEAKKQGRN 427


>gi|296157609|ref|ZP_06840444.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia sp. Ch1-1]
 gi|295892381|gb|EFG72164.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia sp. Ch1-1]
          Length = 370

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 10/176 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+GL N       L +   +       L  +  D+D FK  N
Sbjct: 192 QQLLATNLELQRLTHSDGLTGLSNRRYLDQYLAAEWRRGTRDKAGLGFLMIDVDNFKAYN 251

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+V+  ++  +    G +P    R GGEEFA    G+S     +LA  +R  
Sbjct: 252 DTYGHVAGDEVLKRVAQTVESCLGRSPDLAARFGGEEFAVVVPGTSAGGLRLLAEKIRMA 311

Query: 203 IENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           IE+  I  +   S  +TIS G A       EP++ +I  AD  LY AK+ G+N+V 
Sbjct: 312 IEDLAIPHAGSASGVVTISIGAATLVPSAAEPVTKLIEAADVGLYRAKRDGKNQVA 367


>gi|322417841|ref|YP_004197064.1| diguanylate cyclase [Geobacter sp. M18]
 gi|320124228|gb|ADW11788.1| diguanylate cyclase [Geobacter sp. M18]
          Length = 408

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 102/202 (50%), Gaps = 20/202 (9%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISS 121
           +++++   IS LL     S +KEL      + + + ID L+G+ N           F  +
Sbjct: 212 AILVVVFGISFLL---MRSGIKELKEIQEVLRKQTLIDGLTGIFNKRQIELIGRREFARA 268

Query: 122 L-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
           L     G  + ++  +  DID FK +ND +GH  GD ++   ++++     +   VGR G
Sbjct: 269 LRRREKGLADAEVGFIMIDIDRFKLMNDRYGHLAGDVLLQQFAERVTSCLRSYDSVGRFG 328

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPIS 234
           GEEF     GS  ++   +A+ +  +I +    +   P + ++ SAG+A  ER   E + 
Sbjct: 329 GEEFLVVLPGSDLEQTRSVAHKIWALIRDEPFRVEGKP-LQLSTSAGVATVERGD-EDLL 386

Query: 235 TIIYRADQALYVAKKSGRNRVV 256
            ++ RADQ+LY AK  GR+RV+
Sbjct: 387 QVLKRADQSLYRAKSEGRDRVI 408


>gi|253996746|ref|YP_003048810.1| diguanylate cyclase [Methylotenera mobilis JLW8]
 gi|253983425|gb|ACT48283.1| diguanylate cyclase [Methylotenera mobilis JLW8]
          Length = 328

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 81/171 (47%), Gaps = 25/171 (14%)

Query: 107 DCLSGLLN---------------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           D L+GLLN               HS         N+K  +  FDID+FK+IND FGH +G
Sbjct: 145 DTLTGLLNRKTFDFKISKILAQMHSGTNRKDDKANQKYFLAIFDIDHFKRINDQFGHLIG 204

Query: 152 DKVIAFLSDQLVVVF--GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           D+V+   S  +   F    P+F  R GGEEF      +S  +   +    ++ + N +  
Sbjct: 205 DEVLLMFSQLMRQSFREADPLF--RFGGEEFVGFFECNSTPDIQNIFERFKQKVANFEF- 261

Query: 210 ISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               P +  +++SAG  E    +  S II RAD ALY AK  GRNRV  + 
Sbjct: 262 ----PQVGKVSVSAGFTEISPFDTSSQIIDRADTALYYAKNHGRNRVDSYE 308


>gi|229592511|ref|YP_002874630.1| putative signaling-like protein [Pseudomonas fluorescens SBW25]
 gi|229364377|emb|CAY52152.1| putative signalling-related protein [Pseudomonas fluorescens SBW25]
          Length = 395

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 5/127 (3%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS++  DID FK IND +GH VGD+ +  + + L         + R GG+EF      +S
Sbjct: 272 LSLIAMDIDDFKPINDRYGHGVGDQTLVRVVECLEHAIRPDDLLARWGGDEFVLVLPKTS 331

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
            + A  LA  +R+ ++    N+ SG    IT+S G+A+R   E  + ++ RADQALY AK
Sbjct: 332 LEVATALAERIRQTLK----NLPSG-DFKITLSLGVAQRKAHEAPAALMMRADQALYRAK 386

Query: 249 KSGRNRV 255
            +G++ V
Sbjct: 387 AAGKDGV 393


>gi|187920208|ref|YP_001889239.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
 gi|187718646|gb|ACD19869.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
          Length = 493

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 13/178 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQI 142
           L+E   +   +++L++ D L+G+ N  A    L +  E+L       S++F D D+FKQ 
Sbjct: 316 LREHVKTQVLLTELTQTDPLTGVRNRRALDEFLENEWERLRRNESCLSVLFIDADHFKQY 375

Query: 143 NDNFGHPVGDKVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           ND++GH  GD  +  L+    +     G      R GGEEF      + E  A  +A  +
Sbjct: 376 NDSYGHAQGDLALKHLAACIRRHACRRGD--LTARYGGEEFVVVLPDTDETGAMQVAEAI 433

Query: 200 RKIIENSQINISSG-PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R  +E+  I++S       ++I      R +   ++ +  +AD ALY AK+ GRN VV
Sbjct: 434 RHEVESGPIHLSESLARFTVSIGCATGRRAYPRSLAELTNKADSALYAAKRGGRNAVV 491


>gi|126730278|ref|ZP_01746089.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Sagittula
           stellata E-37]
 gi|126709011|gb|EBA08066.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Sagittula
           stellata E-37]
          Length = 487

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 9/135 (6%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           + + S++  D+D+FK IND +GH +GD+V+  ++  L  V G    + R+GGEEFA    
Sbjct: 326 DAQASLILIDVDHFKSINDAYGHDMGDRVLTNVARSLETVIGANRRLYRVGGEEFAVILP 385

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST----IIYRAD 241
           GS    AAI+A  +R+ +  +    S  PS  +T S G+AE    +P  T     +  AD
Sbjct: 386 GSCADSAAIMAEQMRQRLAEAPDLASDMPS--VTASFGVAE---LDPDITSQDAWVKCAD 440

Query: 242 QALYVAKKSGRNRVV 256
            ALY +K +GRN+V 
Sbjct: 441 IALYASKNNGRNQVT 455


>gi|315295348|gb|EFU54678.1| diguanylate cyclase domain protein [Escherichia coli MS 153-1]
          Length = 430

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 77/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++ISS P    T
Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISSLPRF--T 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|312884496|ref|ZP_07744200.1| diguanylate cyclase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367808|gb|EFP95356.1| diguanylate cyclase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 399

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 93/167 (55%), Gaps = 16/167 (9%)

Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+ L N + F   +           + LS+V  DID+FK  NDN+GH  GDK +
Sbjct: 213 LAEQDALTKLKNRTFFNQKIVKVWRLSHKKQQPLSVVILDIDHFKAYNDNYGHIAGDKAL 272

Query: 156 AFLSD--QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQI--NI 210
             ++   + + +     F  R+GGEEF  A L  +E E+A+ +AN +R+ +E++ I    
Sbjct: 273 RKIAKCIKQINLESEHSFFARVGGEEF-IAVLPDTEVESAVSIANLIREKVEDAAIPHEF 331

Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
           SS  +I +TISAG++     +  S   +I  +D+ALY AK+ GRNRV
Sbjct: 332 SSCSNI-VTISAGVSSIIPPKGRSFIELIEMSDKALYQAKEGGRNRV 377


>gi|254000375|ref|YP_003052438.1| diguanylate cyclase [Methylovorus sp. SIP3-4]
 gi|253987054|gb|ACT51911.1| diguanylate cyclase [Methylovorus sp. SIP3-4]
          Length = 606

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 83/166 (50%), Gaps = 13/166 (7%)

Query: 104 SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S  D L+GL N   F  +          +  +  I+  DID+FK +ND +GH  GD  + 
Sbjct: 429 SSTDFLTGLKNRRGFYEAANIEYARAQRHACESCIMIIDIDHFKTVNDTYGHSAGDWALT 488

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS- 215
           F+   L           R GGEEF      S+ +E  + A  +R +I+ + ++I  GP  
Sbjct: 489 FIGGILKDNSRIHDISARHGGEEFICMLGNSNLEEGCLFAEKIRTLIQAAMVDI--GPDL 546

Query: 216 --IHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             I +T+S GI + +    P+  +I +AD+ALY+AK  GRNRV  F
Sbjct: 547 RPIKLTVSIGITSSQFQHPPLDMMIEQADRALYMAKNLGRNRVQRF 592


>gi|226364222|ref|YP_002782004.1| hypothetical protein ROP_48120 [Rhodococcus opacus B4]
 gi|226242711|dbj|BAH53059.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 399

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 16/159 (10%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+GLLN +A    L    E        +F D+D FK++ND  GH VGD+++  +S+ L
Sbjct: 245 DSLTGLLNRAAITEHLQRLFEPGVAPAVALFLDVDGFKEVNDTRGHRVGDRILQAVSEHL 304

Query: 163 VVVFGTPMFVGRLGGEEFAA-----AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
                TP  VGRLGG+EF A       L   +  A +LA+    I    ++ +       
Sbjct: 305 RHAMRTPSAVGRLGGDEFVAILPDVDELDVDDVVARMLASITTPIDVGDELLV------- 357

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +T+S G+A       +  +++ AD ALY AK+ G N  V
Sbjct: 358 VTLSVGMAHSTSARTVDELLHHADIALYAAKRRGGNTAV 396


>gi|193215757|ref|YP_001996956.1| diguanylate cyclase/serine/threonine protein kinase [Chloroherpeton
           thalassium ATCC 35110]
 gi|193089234|gb|ACF14509.1| diguanylate cyclase and serine/threonine protein kinase with TPR
           repeats [Chloroherpeton thalassium ATCC 35110]
          Length = 604

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 10/176 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
            +L++L      + + +R D L+ L N   F             Y   L++V  DID+FK
Sbjct: 429 ELLEKLREQAEALDRQAREDALTKLANRRHFDQRFAEEFERAERYGHHLTMVISDIDFFK 488

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND + H +GD+V+  ++        +   V R GGEEF      +  ++ A+    +R
Sbjct: 489 KINDKYSHQIGDEVLKQMAKIFTSSCRSVDLVARYGGEEFVFLFPETPLEKGAMACEKIR 548

Query: 201 KIIENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           K +E+   + SS    + +TIS G+ E    E    ++ +AD+ LY AK +GRN+V
Sbjct: 549 KNVES--FDWSSIAKGLKVTISLGLCENKMVEKREEMVTKADEKLYEAKNNGRNQV 602


>gi|45657014|ref|YP_001100.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|45600251|gb|AAS69737.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 315

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 97/209 (46%), Gaps = 38/209 (18%)

Query: 82  LGYISGSILKELFISYNRISQLS--------------RIDCLSGLLNHSAFISSLG---- 123
           L YI+G  + E   S  +ISQL+                D L+ L N  AF  +L     
Sbjct: 106 LVYITGRDITETIESNRKISQLATELKDANDKLFEQASTDSLTKLKNRRAFNEALNHLVH 165

Query: 124 -SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            S  +K  LS++  D D+FK  ND FGH  GDK++  L+D L         + R GGEEF
Sbjct: 166 FSQKQKSPLSLLMIDADHFKDYNDTFGHLEGDKILIILADLLTKALRKGDVLARYGGEEF 225

Query: 181 AAAALGSSEQEAAILANDLRKIIE--NSQINISSGPSIHITISAGIA--------ERCHK 230
             A   +SE E   ++  L + +   N +  I       IT+S G A        +  + 
Sbjct: 226 IVALPLTSEDETIDISERLLQTVREFNWEKRI-------ITVSVGAATYDFNSNSKNINL 278

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           E    +I +AD+ALY +K +GRNR+  FS
Sbjct: 279 EYSINLIEQADKALYCSKVNGRNRITHFS 307


>gi|134298775|ref|YP_001112271.1| metal dependent phosphohydrolase [Desulfotomaculum reducens MI-1]
 gi|134051475|gb|ABO49446.1| metal dependent phosphohydrolase [Desulfotomaculum reducens MI-1]
          Length = 561

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 88/200 (44%), Gaps = 11/200 (5%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------I 119
            NL   I+   +  +  ++ G I      + N +  L+  D LS + NH  F       I
Sbjct: 147 RNLESDIVFTGVMFICAWLIGGIAGIERDTRNILVNLANKDGLSEIYNHRYFHVTFKKAI 206

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
               S N  LS++  DIDYFK  ND FGH  GD ++  +   L      P    R GG+E
Sbjct: 207 EEAKSSNSPLSLLIMDIDYFKYYNDAFGHLAGDNILKDIGQILKQKVEYPGIAARYGGDE 266

Query: 180 FAAAALGSSEQEAAILANDLRKIIEN---SQINISSGPSIHITISAGIAERC-HKEPIST 235
           F     G     A I+A  L+  I+            P+   +I+ G+A    H +    
Sbjct: 267 FCVLLPGYDSNVAIIIAQKLKDSIDQYFADNEQFKQLPTGKFSITLGLASYPEHTQKGDD 326

Query: 236 IIYRADQALYVAKKSGRNRV 255
           ++  ADQALY AKK+ +N+V
Sbjct: 327 LLELADQALYKAKKTSKNKV 346


>gi|88797497|ref|ZP_01113086.1| response regulator/sensory box protein/GGDEF domain protein
           [Reinekea sp. MED297]
 gi|88779669|gb|EAR10855.1| response regulator/sensory box protein/GGDEF domain protein
           [Reinekea sp. MED297]
          Length = 295

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 10/174 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           ++ ELF   +   + S  D  +GL N    +  L         Y+   +I   D+D+FK+
Sbjct: 120 LMNELFTMQDSFEEASIRDYATGLYNRRYAMERLEQMYLHAKRYHNPFTIALVDVDHFKR 179

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FG+  GD VI  L+  LV          R  GEEF      +  QEA +  + LR+
Sbjct: 180 INDTFGYAFGDNVIEQLAGVLVRSLRETDICARYAGEEFMVLMPETETQEAILSLDRLRQ 239

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +   +      P   +T+S+G+      + +  +++ ADQ L  AKK+GRN+V
Sbjct: 240 QVSELKWTNMQRP---VTVSSGVISWQPNKSVEQLMFLADQRLSTAKKAGRNQV 290


>gi|332139605|ref|YP_004425343.1| response regulator/GGDEF domain protein [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327549627|gb|AEA96345.1| response regulator/GGDEF domain protein [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 426

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 7/170 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL----SIVFFDIDYFKQINDNFG 147
           E   S   I +++  D L+GL N   F   +   ++KL    ++   D+D+FK IND  G
Sbjct: 246 EYIESVEEIRRVANTDYLTGLPNRRHFFYMVTVQHQKLLENHALALIDLDFFKSINDTHG 305

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  ++  L+  +     + R GGEEF       + + A     D RK++E   
Sbjct: 306 HDAGDIVLKAIA-ALIEFYFPDEIISRFGGEEFCIYMPSITLENACKRLEDFRKVVEAEV 364

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I +     I +T S G++   H + +  ++  AD+ LY AK  GRN+V C
Sbjct: 365 IQLPK-TDIKVTCSIGVSG-THTQRVDKLLSLADKQLYAAKHDGRNQVKC 412


>gi|218558327|ref|YP_002391240.1| diguanylate cyclase, GG[D/E]EF domain signalling protein
           [Escherichia coli S88]
 gi|218365096|emb|CAR02803.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein
           [Escherichia coli S88]
 gi|307553402|gb|ADN46177.1| putative diguanylate cyclase [Escherichia coli ABU 83972]
 gi|323949056|gb|EGB44948.1| GGDEF domain-containing protein [Escherichia coli H252]
 gi|323956902|gb|EGB52634.1| GGDEF domain-containing protein [Escherichia coli H263]
          Length = 410

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 77/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++ISS P    T
Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISSLPRF--T 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409


>gi|148358623|ref|YP_001249830.1| GGDEF domain-containing sensory box protein [Legionella pneumophila
           str. Corby]
 gi|148280396|gb|ABQ54484.1| sensory box/GGDEF family protein [Legionella pneumophila str.
           Corby]
          Length = 835

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 22/189 (11%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDID 137
           I G+ + +L  + N +  L+R D L+ + N   F   L          EK L+++  D+D
Sbjct: 390 IYGTDITQLKNTQNAMLNLTRRDTLTQIANRQYFEEKLIEKIYEHHLKEKSLALLLIDLD 449

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND  GHP+GDK++  +++++        F+ RLGG+EF       +   A  +A 
Sbjct: 450 NFKIVNDTLGHPIGDKLLMAVTNRMTRCLRANDFIARLGGDEFIVLLDQCNTDTAVKVAE 509

Query: 198 DLRKIIENSQINISSGP----SIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKS 250
            +        IN+   P      H+TI+A I    + E     S ++  AD A+Y +KK+
Sbjct: 510 KI--------INVLDKPFQFDEYHMTITASIGIAIYPETSEIASDLLKYADIAMYQSKKT 561

Query: 251 GRNRVVCFS 259
           G+N+   FS
Sbjct: 562 GKNKCTVFS 570


>gi|302344595|ref|YP_003809124.1| diguanylate cyclase with PAS/PAC sensor [Desulfarculus baarsii DSM
           2075]
 gi|301641208|gb|ADK86530.1| diguanylate cyclase with PAS/PAC sensor [Desulfarculus baarsii DSM
           2075]
          Length = 831

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 15/167 (8%)

Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+GL N   F +++         + + L+++  D+D FKQ ND FGH  GDK +
Sbjct: 656 LSVTDELTGLYNKRFFHATVDREMEIARRFGQPLALLMLDLDRFKQYNDTFGHLEGDKAL 715

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-- 213
           A  +  +  V        R GGEEFA     +   EA ++A  +R  +E   +   +   
Sbjct: 716 AQFAGVVRGVVRAADLPCRYGGEEFAVLLPRTERAEAMVVAERIRAAVEAMDLWPVAADG 775

Query: 214 --PSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256
                 +T+S G+A  C K  ++   +I  ADQALY AK++GRNRV+
Sbjct: 776 QRQKRRVTVSIGVA--CLKGDLNQDRLINLADQALYAAKQAGRNRVI 820


>gi|294626235|ref|ZP_06704840.1| GGDEF family protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294666834|ref|ZP_06732067.1| GGDEF family protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292599500|gb|EFF43632.1| GGDEF family protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292603418|gb|EFF46836.1| GGDEF family protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 317

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 83/180 (46%), Gaps = 19/180 (10%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF-----------ISSLGSYNEKLSIVFFDIDYFKQI 142
           F +Y  +   ++ D L+GL N   F             S       L IV  DID+FK++
Sbjct: 126 FQNYRSLLDDAQRDALTGLRNRKTFDDVILRLFAGGADSAAEPGVWLGIV--DIDHFKRV 183

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH  GD+V+  ++  +   F     + R GGEEF     G     A  L    R  
Sbjct: 184 NDTFGHLYGDEVLLLVAQLMQRAFRQDDLLFRFGGEEFVIVLRGVDRDTAVCLFERFRLA 243

Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +          P +  +T+S GI E  H   IS ++  AD+ALY AK++GRNR   ++++
Sbjct: 244 VAEHLF-----PQVGQVTLSTGIVELTHGRLISEMLDEADKALYWAKQNGRNRAAVYAEL 298


>gi|262402458|ref|ZP_06079019.1| GGDEF family protein [Vibrio sp. RC586]
 gi|262351240|gb|EEZ00373.1| GGDEF family protein [Vibrio sp. RC586]
          Length = 438

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 12/161 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+G +N       L            + S++F DIDYFK++ND +GH +GD +
Sbjct: 272 EMAHRDALTGAINRHGIRDWLQDQARLVRWQLNQFSVLFIDIDYFKKVNDIYGHSLGDDL 331

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   +  L         + R GGEEF      +S ++A  LA+ LR  +E+ +  I  G 
Sbjct: 332 LREFALVLNREIRESDKLVRWGGEEFVVFCAQTSLEQAVELADRLRARVEDHRW-IHGGD 390

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              +T S GIA+    E ++  + RAD+ALY AK+ GRNR+
Sbjct: 391 ---LTCSIGIAQ-MGDERVTETVSRADEALYRAKRLGRNRI 427


>gi|119486748|ref|ZP_01620723.1| regulatory component of sensory transduction system [Lyngbya sp.
           PCC 8106]
 gi|119456041|gb|EAW37174.1| regulatory component of sensory transduction system [Lyngbya sp.
           PCC 8106]
          Length = 456

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 10/167 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q +  D L+ + N  AF   L    ++       L+++  DIDYFK+ ND++GH  GD+ 
Sbjct: 287 QQAITDNLTKISNRRAFDVYLKQEWKRAKREALSLALMMIDIDYFKRYNDHYGHEAGDRC 346

Query: 155 IAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  ++  +      P  FV R GGEEFA     +  + A  +A+ ++K I + ++  +  
Sbjct: 347 LYTVAQTIRQAVKRPSDFVARYGGEEFAVILPNTEREGAETVADSIQKAIHDFKLPHAQS 406

Query: 214 P-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           P S  IT+S GI+ +    E  + +I  AD ALY AK  GR+R+  +
Sbjct: 407 PISSCITLSIGISIQIPTSEDFTILIQTADHALYEAKHQGRDRIQVY 453


>gi|187925942|ref|YP_001897584.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia phytofirmans PsJN]
 gi|187717136|gb|ACD18360.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia phytofirmans PsJN]
          Length = 362

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 84/176 (47%), Gaps = 10/176 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFF--DIDYFKQIN 143
           ++L  +   + +L+  D L+GL N       L      S  EK  + F   D+D FK  N
Sbjct: 184 QQLLATNLELQRLTHSDGLTGLSNRRYLDQYLAAEWRRSTREKTGLGFLMIDVDNFKAYN 243

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+V+  ++  +    G P     R GGEEFA    G+S     +LA  +R  
Sbjct: 244 DTYGHVAGDEVLKTVAHTVESCLGRPADLAARFGGEEFAVVVPGTSSGGLRLLAEKIRIA 303

Query: 203 IENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVV 256
           IE   I  S   +  +TIS G A       EP++ +I  AD  LY AK+ G+N+V 
Sbjct: 304 IEGLAIPHSGSATGIVTISIGAATLVPTVAEPVTKLIEAADVGLYRAKRDGKNQVA 359


>gi|323498467|ref|ZP_08103461.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
 gi|323316479|gb|EGA69496.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
          Length = 387

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 88/175 (50%), Gaps = 11/175 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           K+L  +  ++ +LS  D L+ L N    I  L  Y        E L  +  D DYFKQ+N
Sbjct: 193 KQLSQANKQLEELSLTDSLTRLPNRRCAIRKLKVYWQEAIQNQEPLVCIMIDADYFKQVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+++  L+  L   F +   V RLGG+EF      +  +  A +A   R+ +
Sbjct: 253 DTAGHDAGDRLLIELAQTLQHSFRSDDLVCRLGGDEFFVICPNTDLEGGAHIAELTRQKV 312

Query: 204 ENSQINISSGPSI-HITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
             +Q+ +  G S+   +IS G+ ER  +    + +I  AD A+Y AK SGRN+V 
Sbjct: 313 --NQMLVPVGESVWRGSISIGVGERSDEMVDYNDLIKVADNAVYQAKSSGRNQVA 365


>gi|320157878|ref|YP_004190256.1| hypothetical protein VVM_00100 [Vibrio vulnificus MO6-24/O]
 gi|319933190|gb|ADV88053.1| hypothetical protein VVMO6_03031 [Vibrio vulnificus MO6-24/O]
          Length = 581

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 7/160 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           QL   D ++ L N ++  +++      E L +   +ID F++IND+FGHPVGD VI   +
Sbjct: 413 QLRHQDPMTQLENKASLANTVQRELGKEDLYLAMINIDNFQRINDSFGHPVGDMVIRKTA 472

Query: 160 DQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
             +   F  P  + + R G EEFA     S+  EA    N+L+  I N+++ + +G  + 
Sbjct: 473 QMIRDAFPKPNGLCLARYGSEEFAVLFQSSAPHEAQTQLNELKHAISNTRL-LEAGLPVG 531

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +IS G+ +          I  A++AL  AK  G+NRVV 
Sbjct: 532 YSISVGLTQLA--PSYHETIENAERALQRAKNLGKNRVVT 569


>gi|308185518|ref|YP_003929650.1| inner membrane protein yfin [Pantoea vagans C9-1]
 gi|308055798|gb|ADO07968.1| Inner membrane protein yfiN [Pantoea vagans C9-1]
          Length = 527

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 7/153 (4%)

Query: 107 DCLSGLLNHSAF--ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+GL N   F  +++      +  ++  DID+FK+IND +GH  GD V+  L+  L  
Sbjct: 365 DPLTGLCNRRGFSALAAQADSEHEQCVIAIDIDHFKKINDWYGHDAGDAVLVSLAALLRQ 424

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
              T   V R GGEEF      ++  +AA  A  +R+ +  +    +      +TISAG+
Sbjct: 425 ACRTGDIVSRFGGEEFILLLPDTTLADAARTAERIRETVCATTFPFAG----TMTISAGV 480

Query: 225 AERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           A R  +      ++ RAD+ALY AK +GRN V+
Sbjct: 481 ASRDDQSRDRDALLRRADEALYEAKAAGRNTVI 513


>gi|238758551|ref|ZP_04619727.1| Predicted diguanylate cyclase [Yersinia aldovae ATCC 35236]
 gi|238703251|gb|EEP95792.1| Predicted diguanylate cyclase [Yersinia aldovae ATCC 35236]
          Length = 366

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 22/247 (8%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI-ISITISL-LLGY-- 84
           +  S+F   FI+T+    N   F +   P   L  I +++   +  I  TI L L+G+  
Sbjct: 108 LLLSLFMIFFISTIALSDNFLAFCLHTAP-SALTVIFLDDFQNIFRILFTIMLPLIGFSL 166

Query: 85  ----------ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---- 130
                      +  ++  L+    + S LS ID L+ L N     + L +   +      
Sbjct: 167 HHLMLRRSDDFTRKLVARLYNEREKFSDLSMIDPLTSLYNRRGLENKLETLLSQSPGNHY 226

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  DID+FK  NDN+GH +GD+ +  ++  +     +   V R GGEEF       SE+
Sbjct: 227 VLLLDIDHFKAYNDNYGHTMGDQALVRVASAIRDAVRSRDIVVRYGGEEFLVLLTHVSEE 286

Query: 191 EAAILANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
            A+ LA  +R+ + +  I    +   S  +T+SAGI+     + +++ +  AD+ALY AK
Sbjct: 287 YASQLAERVRQRVLSLDIPHVFNHKVSTTVTLSAGISPLLAYD-LASSLKAADEALYRAK 345

Query: 249 KSGRNRV 255
           K GRN+V
Sbjct: 346 KDGRNKV 352


>gi|238764620|ref|ZP_04625566.1| hypothetical protein ykris0001_24790 [Yersinia kristensenii ATCC
           33638]
 gi|238697210|gb|EEP89981.1| hypothetical protein ykris0001_24790 [Yersinia kristensenii ATCC
           33638]
          Length = 277

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 78/153 (50%), Gaps = 9/153 (5%)

Query: 107 DCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D ++GL N     ++L       +  S++  DID+FK IND++GH VGD+VI  L+ Q+ 
Sbjct: 127 DPMTGLYNRRGLATTLEPIAQLGQHFSVIALDIDHFKSINDSYGHDVGDEVIKQLAIQIR 186

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISA 222
                   + R GGEEF     G+    A  +AN LR  +E   I     P I  ITIS 
Sbjct: 187 DSSRDSDILCRSGGEEFLMLLPGTVPDVAIQVANRLRHNVEMMVI-----PGIQPITISL 241

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G+A           + RAD+ALY AK+ GRN V
Sbjct: 242 GVAFWNGVGAPEDALKRADEALYRAKQQGRNWV 274


>gi|120596930|ref|YP_961504.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella sp. W3-18-1]
 gi|120557023|gb|ABM22950.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella sp. W3-18-1]
          Length = 1216

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 10/182 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + E  +S  RI  L+  D L+ L N  +  SSL        +   +++++F D+D+FK I
Sbjct: 777 ISERKMSEERIHFLAHHDSLTLLPNRLSLQSSLEIVFGEALASQSQIAVMFIDMDHFKNI 836

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH VGD+++  ++ +L  +      V RLGG+EF      ++  E A LA  LR  
Sbjct: 837 NDTLGHHVGDQLLLEVARRLKNIVDNNDIVARLGGDEFVVVLSDTNHDEVASLAEALRSG 896

Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +  SQ  I    S+H + S GI+        +  ++  AD A+Y AK +GRN    F+  
Sbjct: 897 L--SQTYIIDNNSLHSSPSIGISLFPTDGNTVEALMKNADMAMYRAKAAGRNNYQFFTAA 954

Query: 262 EN 263
            N
Sbjct: 955 MN 956


>gi|121728244|ref|ZP_01681277.1| GGDEF family protein [Vibrio cholerae V52]
 gi|147674355|ref|YP_001216756.1| GGDEF family protein [Vibrio cholerae O395]
 gi|262169491|ref|ZP_06037183.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|121629495|gb|EAX61921.1| GGDEF family protein [Vibrio cholerae V52]
 gi|146316238|gb|ABQ20777.1| GGDEF family protein [Vibrio cholerae O395]
 gi|227013102|gb|ACP09312.1| GGDEF family protein [Vibrio cholerae O395]
 gi|262022304|gb|EEY41013.1| GGDEF family protein [Vibrio cholerae RC27]
          Length = 443

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 34/172 (19%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+G +N       L             +S++F DIDYFKQ+ND +GH +GD +
Sbjct: 272 EMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDL 331

Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KII 203
           +             SD+LV          R GGEEF      ++ ++A  LA  LR KI 
Sbjct: 332 LREFALVISREIRESDKLV----------RWGGEEFVVFCAQTTLEQAIELAERLRAKIA 381

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++S I+  +     IT S GIA+    E I+  + RAD+ALY AK+ GRNR+
Sbjct: 382 DHSWIHGGA-----ITCSLGIAQ-MGDERITETVSRADEALYRAKRLGRNRI 427


>gi|332993845|gb|AEF03900.1| GGDEF domain-containing protein [Alteromonas sp. SN2]
          Length = 369

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 111/249 (44%), Gaps = 20/249 (8%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIF-LFYIGLTPFYGLEYILVENLSLVIISITISL 80
           F+  +  ++F+ F    +A   F A I  +F+         EY       +V   IT+S 
Sbjct: 114 FTVPSVTMFFTGFRRGLMALTGFAAVIIVIFFTPDNALLATEYSFEFKTRIVYTFITVSF 173

Query: 81  LLGYISGSILKELFISYN-------RISQLSRIDCLSGLLNHSAF-------ISSLGSYN 126
           L      S  +    SYN       +  + +R D L+ +LN           +S +    
Sbjct: 174 LSAVYEYSRQR----SYNTAVYLSEQFERQARYDPLTTILNRRGGQQQLEQELSRMQRNK 229

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           +  SI   DID FK IND FGH  GD+V+  ++            + R GGEEF      
Sbjct: 230 KPFSIALADIDRFKSINDTFGHDAGDEVLKKVASVFSSRLRAQDGLSRWGGEEFLFIFPE 289

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
           ++EQ+A ++   +R+ +  + I + +  S  +T S G+ E      ++T +  ADQALY 
Sbjct: 290 TNEQDARMVTEQIRENLSANAIPVDN-KSHRVTSSFGVCEITPSMTLTTALNLADQALYQ 348

Query: 247 AKKSGRNRV 255
           AK  GRN+V
Sbjct: 349 AKNDGRNKV 357


>gi|301029766|ref|ZP_07192819.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
 gi|299877373|gb|EFI85584.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
          Length = 476

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 309 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 368

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +         + R+GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 369 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 428

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 429 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 465


>gi|297578815|ref|ZP_06940743.1| GGDEF family protein [Vibrio cholerae RC385]
 gi|297536409|gb|EFH75242.1| GGDEF family protein [Vibrio cholerae RC385]
          Length = 372

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 16/180 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L+    ++  LS  D L+GL N    +  L           +    V  DID FK +N
Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH VGDKV+  +++ L   F +   V RLGG+EF      ++      +A  + + I
Sbjct: 253 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETNTAGGVYIAEQVCRAI 312

Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   I++ +      ++S G+A      + H E    ++  ADQA+Y+AK SG+NRV  F
Sbjct: 313 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHE----LLRAADQAVYLAKNSGKNRVCAF 368


>gi|253689988|ref|YP_003019178.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251756566|gb|ACT14642.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 526

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 80/163 (49%), Gaps = 10/163 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D ++ LLN     S L  +    +  +++  DID FK+IND +GH +GD VI +LS  + 
Sbjct: 368 DPMTDLLNRRGLDSVLRYWQMGQKSFAVIALDIDRFKRINDTYGHDIGDNVIRYLSQLIR 427

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   + R GGEEF      +S   A  +A  LR  +E S I +      +ITIS G
Sbjct: 428 TSSRDSDILCRSGGEEFLILLPETSLDVALSIAERLRLRMEESTIPVVG----NITISLG 483

Query: 224 IA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +A      +   I      AD+ALY AK+ GRNRVV  S  E 
Sbjct: 484 VALWEPGANDTSIERTFKLADEALYQAKQEGRNRVVSASGNEQ 526


>gi|190576436|ref|YP_001974281.1| putative transmembrane GGDEF signaling protein [Stenotrophomonas
           maltophilia K279a]
 gi|190014358|emb|CAQ48005.1| putative transmembrane GGDEF signaling protein [Stenotrophomonas
           maltophilia K279a]
          Length = 412

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 76/169 (44%), Gaps = 21/169 (12%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+GL    AF  +L       SI   D+D+FK  ND  GH  GD V+  ++ +L  V 
Sbjct: 231 DELTGLPGRRAFNETLQRARGTYSIAMVDVDHFKSFNDTHGHDTGDDVLRLVASRLDRV- 289

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------------ 214
           G      R GGEEFA   L             LR+ IE++++ +                
Sbjct: 290 GDGGRAFRYGGEEFAVVFLDRPAAACVDAVEALRQTIEDTRMQLRDRSTRSRDDETGRRQ 349

Query: 215 --------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                   ++ +T+S G+A+    E  + +I  ADQALY AK  GRN+V
Sbjct: 350 RGRGGSGQTVQVTVSIGLADSRVDERPAAVIKAADQALYAAKDGGRNQV 398


>gi|28867570|ref|NP_790189.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28850805|gb|AAO53884.1| GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 677

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 83/161 (51%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIV--FFDIDYFKQINDNFGHPVGDKV 154
           Q + ID L+GL N +++   L         +K S++    D+D+FK+IND +GH  GDKV
Sbjct: 515 QKALIDPLTGLPNRASWGERLEQEMADWQRDKNSLLVCILDLDHFKRINDGYGHLAGDKV 574

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +++          F+ R GGEEF      +       L ++LR  +E    +   G 
Sbjct: 575 LKIVANVFKKRLRPADFLARFGGEEFVMLLPATLLGAGLTLLDELRTAVELCPFHFK-GE 633

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT+S G+      E   T I RADQALY AK++GRNRV
Sbjct: 634 RVTITVSIGVTALRTGERSDTAIKRADQALYKAKENGRNRV 674


>gi|330952850|gb|EGH53110.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 298

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 11/171 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVF--FDIDYFKQI 142
           S++ +   + +R  +LS  D L+   N  A + SL +     EK S+ F   D+D+FK I
Sbjct: 102 SLIMQTMAARDRYQELSETDTLTHAPNRRALVDSLNTALASAEKSSLWFAMLDLDHFKSI 161

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH VGD V+   + +L    G   F GRLGGEEF      ++  +A     +L  +
Sbjct: 162 NDTHGHEVGDNVLISFATRLKDTKGRIAF-GRLGGEEFGVILSAANATDAVHALEELLML 220

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +  +        +  + S G+A     E  + ++  AD+ LY AK+SGR 
Sbjct: 221 TQKDET-----AQVPYSFSGGVASLSRVETFNDLLKEADENLYHAKRSGRK 266


>gi|229916012|ref|YP_002884658.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
 gi|229467441|gb|ACQ69213.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
          Length = 347

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 12/194 (6%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISS 121
           LS V++   +S +       +  EL  S  R+  L+  D L+GLLN        S  I  
Sbjct: 156 LSTVVMIAGLSFIFESAVVEVTDELERSNERLQILASTDGLTGLLNRKVGHEHVSKAIDK 215

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                   +IV  DID FK  N+ +GH  GD+V+  ++  L  + G  +   R GGEEF 
Sbjct: 216 AAHEGVPYAIVLGDIDRFKSFNETYGHDCGDRVLQQVASILSDIDGMAV---RWGGEEFL 272

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
              L S   +   +   LR+ IE++ ++ + G  +H+T++ G+A R   + +  I+  AD
Sbjct: 273 VY-LSSPSGDFLPIVEQLRQQIESTPLHYA-GERLHVTMTFGLAVRVGHDTVEEIVKEAD 330

Query: 242 QALYVAKKSGRNRV 255
             L   K+SG+N+V
Sbjct: 331 NFLREGKRSGKNQV 344


>gi|291288402|ref|YP_003505218.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885562|gb|ADD69262.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809]
          Length = 516

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 103/215 (47%), Gaps = 22/215 (10%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNR-----------ISQLSRIDCLSGLLN 114
           VE    + ++  +S+ L       LKEL ++ NR           I +LS ID L+ + N
Sbjct: 302 VERFKKIELNNDLSVRLSETGSFELKELAVAANRAMDKIENLNKEIVKLSNIDALTQIYN 361

Query: 115 HSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
              F         S    N  ++I+  DIDYFK  ND  GH  GD  +  ++  +     
Sbjct: 362 RKFFDEQYIKQYKSSARNNSSIAILMIDIDYFKSYNDAHGHVEGDACLKEVASIIKNSIS 421

Query: 168 TPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIA 225
            P  +  R GGEEF      +    A  +A  +RK I +S+  + +S  S +ITIS G+A
Sbjct: 422 RPDDIAARYGGEEFIIMLPFTHADGAIHIAETIRKNIADSKKPHGASQVSEYITISIGVA 481

Query: 226 ERCHKEPISTI--IYRADQALYVAKKSGRNRVVCF 258
               ++  S+I  I +AD+ALY AK+ GRNRV  F
Sbjct: 482 IEVPEDSSSSINLISKADKALYQAKRYGRNRVETF 516


>gi|158333756|ref|YP_001514928.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158303997|gb|ABW25614.1| diguanylate cyclase (GGDEF domain), putative [Acaryochloris marina
           MBIC11017]
          Length = 370

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 96/180 (53%), Gaps = 13/180 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFK 140
           S+ ++L ++  ++ +L  ID L+ + N   F  +       L   N  LS++  D+D+FK
Sbjct: 144 SLSEQLELANQQLEELVTIDSLTQVNNRRCFDETFLSEWNRLCRENHPLSLIMCDVDHFK 203

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAI-LAND 198
             ND +GH  GD  +  ++  +  V   P   V R GGEEF A  L +++ + AI +A  
Sbjct: 204 AFNDTYGHQAGDVCLRQVAQAIAKVAKRPADCVARYGGEEF-AIILPNTDLDGAIQVAEA 262

Query: 199 LRKIIENSQI-NISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRV 255
           +R  I+   I +  S    ++T S G+A +   E +  S +I  AD+ALYVAK+ GR+RV
Sbjct: 263 IRSTIQELAIPHQHSSTGNNVTASLGVASQVPDENVAPSILIEAADRALYVAKQQGRDRV 322


>gi|124515412|gb|EAY56922.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptospirillum rubarum]
          Length = 703

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 85/173 (49%), Gaps = 15/173 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIV---FFDIDYFKQINDNFGHPV 150
            RI+  +  D L+ L N   F   L    G  +   S+V   + D+DYFK IND  GHP 
Sbjct: 259 QRIAYQANFDSLTDLPNRHLFQDRLSRAVGQAHRTGSLVALLYLDVDYFKNINDRMGHPY 318

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQIN 209
           GD+V+  L  +L  V      + R+GG+EFA       ++ EA +L   L  +IE +   
Sbjct: 319 GDRVLVELGKRLKTVVRETDTIARIGGDEFAVILCDLHDRSEAMVLGRRL--MIEAAMPF 376

Query: 210 ISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCFS 259
              G    +T+S G+A   + E     +T+I  AD ALY  K+ GRN +  FS
Sbjct: 377 RIDGSRADLTVSIGVA--LYPEDGTDATTLIRNADIALYQVKREGRNNIAFFS 427


>gi|88705283|ref|ZP_01102994.1| GGDEF domain protein [Congregibacter litoralis KT71]
 gi|88700373|gb|EAQ97481.1| GGDEF domain protein [Congregibacter litoralis KT71]
          Length = 365

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 85/181 (46%), Gaps = 24/181 (13%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL +   ++  LS  D L+G LN   F       ++        LS++  D+D+FK  N
Sbjct: 181 RELEVVNQQLLSLSITDPLTGALNRRGFNDRLKAELAGAARTGTPLSVLMLDVDHFKHYN 240

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGHP GD  +   S+ L         V R GGEEFA     +  + A I+A  +R+ +
Sbjct: 241 DAFGHPAGDVALRKTSEALRACCRDNDSVSRYGGEEFALILPATDAEGAGIMAERVRQAV 300

Query: 204 E-----NSQINIS----SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
                   +I +S    S P+  +T  A +A        +T++  AD ALY AK+ GR+R
Sbjct: 301 AKLEGLKQEITVSVGAASAPAAVLTDLAMVA--------TTLVAFADSALYRAKEGGRDR 352

Query: 255 V 255
            
Sbjct: 353 A 353


>gi|94313070|ref|YP_586279.1| putative diguanylate cyclase [Cupriavidus metallidurans CH34]
 gi|93356922|gb|ABF11010.1| putative diguanylate cyclase, GGDEF domain protein [Cupriavidus
           metallidurans CH34]
          Length = 409

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 84/174 (48%), Gaps = 15/174 (8%)

Query: 104 SRIDCLSGLLNHSAF----ISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GLLN  A     IS +  +    E LS +  D+DYFK +ND  GH  GD V+ 
Sbjct: 223 ARTDALTGLLNRGALDMLAISMIARWQRNGEALSCLVIDVDYFKLVNDTHGHHAGDNVLR 282

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++  L           R GGEEF      + E +A  LAN + + +   ++  + G   
Sbjct: 283 EIATALDNSRRASDIAARYGGEEFCILCPHTDEHQATALANRILRKVRAIELPGAGG--- 339

Query: 217 HITISAGIAERCHKEPISTIIYR-----ADQALYVAKKSGRNRVVCFSDIENNT 265
           H ++S G+AE          ++R     AD+ALY AK+ GR++ +  S +   T
Sbjct: 340 HASVSIGVAELRGGPSSREGLWRSLFATADRALYQAKQRGRDQFMLASSMIEET 393


>gi|288941878|ref|YP_003444118.1| response regulator receiver modulated diguanylate cyclase
           [Allochromatium vinosum DSM 180]
 gi|288897250|gb|ADC63086.1| response regulator receiver modulated diguanylate cyclase
           [Allochromatium vinosum DSM 180]
          Length = 303

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 18/178 (10%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L +  +R+ Q++  D L+ + N   F   L          ++ LS++  DID FK  ND+
Sbjct: 126 LKLRTDRLEQVAMQDGLTQIPNRRRFDQKLREEWARLIRPDQSLSLLMIDIDQFKPYNDH 185

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD+ +  ++  L  V   P   V R GGEEFA     + E  A  LA   R+++E
Sbjct: 186 YGHGAGDECLRQVAQALYQVPQRPADLVARYGGEEFAVVLPETDETGAEHLA---RRLLE 242

Query: 205 NSQI----NISSGPSIHITISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRNRV 255
           + Q     +  S  +  +++S G+A    + P S    +   AD+ALY AK  GRNRV
Sbjct: 243 SVQALGIEHDYSDVAPQVSVSIGVATHSPRRPRSDAEALKQSADRALYQAKSQGRNRV 300


>gi|307153753|ref|YP_003889137.1| PAS/PAC and GAF sensors-containing diguanylate cyclase [Cyanothece
            sp. PCC 7822]
 gi|306983981|gb|ADN15862.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp. PCC
            7822]
          Length = 1121

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 81/169 (47%), Gaps = 20/169 (11%)

Query: 107  DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
            D L+GL N      SL             + ++  D+D+FKQ NDNFGH  GD ++  + 
Sbjct: 958  DSLTGLYNRRYMEESLKREINLAQRKQHPVGLIMIDVDHFKQFNDNFGHKAGDLILHEVG 1017

Query: 160  DQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
            + L+    +     R GGEEF      A+L  S+Q     A  +RK I+  Q+N     S
Sbjct: 1018 NFLMANVRSGDIACRYGGEEFLLILPEASLSDSQQR----AEQIRKGIK--QLNFQQYNS 1071

Query: 216  IHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
               +++  I   C   H +   T+I  AD ALY AK  GR+RVV FS +
Sbjct: 1072 AFTSLTVSIGVACFPAHGKQGETLIQSADMALYQAKNQGRDRVVVFSSV 1120


>gi|52842848|ref|YP_096647.1| sensory box/GGDEF family protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629959|gb|AAU28700.1| sensory box/GGDEF family protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 835

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 22/189 (11%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDID 137
           I G+ + +L  + N +  L+R D L+ + N   F   L          EK L+++  D+D
Sbjct: 390 IYGTDITQLKNTQNAMLNLTRRDTLTQIANRQYFEEKLIEKIYEHHLKEKSLALLLIDLD 449

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND  GHP GDK++  +++++        F+ RLGG+EF       +   A  +A 
Sbjct: 450 NFKIVNDTLGHPTGDKLLMAVTNRMTRCLRANDFIARLGGDEFIVLLDQCNTDTAVKVAE 509

Query: 198 DLRKIIENSQINISSGP----SIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKS 250
            +        IN+   P      H+TI+A I    + E     S ++  AD A+Y++KK+
Sbjct: 510 KI--------INVLGKPFQFDEYHMTITASIGIAIYPETSEIASDLLKYADIAMYLSKKT 561

Query: 251 GRNRVVCFS 259
           G+N+   FS
Sbjct: 562 GKNKCTVFS 570


>gi|78484742|ref|YP_390667.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78363028|gb|ABB40993.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2]
          Length = 555

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 107/209 (51%), Gaps = 22/209 (10%)

Query: 66  VENLSLVIISITISLLLG-----YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           ++N++ ++I I +  L+G     + S    K+L     R   L+  D L+GL N  A   
Sbjct: 354 LQNMASLLIGIIV--LMGGIAFLFASNRHQKQLLQQKARY--LAYHDSLTGLYNRYALTQ 409

Query: 121 SLGSYN--------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           + G +N        +  S+ F D+D FK IND +GH VGD+V+  ++ +L         V
Sbjct: 410 TEGQHNLLANKSDNDSYSVFFLDLDGFKPINDTYGHQVGDQVLQTIASRLKNTVRKEDIV 469

Query: 173 GRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAGIAERCHK- 230
            R+GG+EFA     + ++ A  I  + L K IE   I +    ++H+  S G+A      
Sbjct: 470 VRVGGDEFAIITYHTVDRVAIQIFGDRLIKAIEKP-IQLDD-KTLHLGTSIGVASYPQNG 527

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + ++ +I  AD A+Y AKKSG+ + +CF+
Sbjct: 528 DTLNQLIDLADAAMYKAKKSGKGK-LCFA 555


>gi|325920561|ref|ZP_08182483.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           gardneri ATCC 19865]
 gi|325548954|gb|EGD19886.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           gardneri ATCC 19865]
          Length = 982

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 87/172 (50%), Gaps = 10/172 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           +EL ++   ++  +  D L+GLLN +  + +L           + L++V  D+D+FK +N
Sbjct: 801 RELEVARAELALKATHDELTGLLNRAGILHALRGMLARATVQAQPLAVVLIDLDHFKLVN 860

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD V+A +  +L  +      +GR GGEE  A   G +      L    R I 
Sbjct: 861 DQHGHLAGDAVLAEVGRRLDTLVRGDDRIGRYGGEELLALLPGLNADSTHRLQALHRGIC 920

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  I+   G  + +T S G+A     E +  ++ RAD ALY AK+SGRNR+
Sbjct: 921 GDYPID---GSVLAVTCSIGVAWFQPGETLEQLLARADAALYRAKRSGRNRI 969


>gi|291288707|ref|YP_003505523.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885867|gb|ADD69567.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809]
          Length = 275

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 11/165 (6%)

Query: 102 QLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++SR D L+ + N  +        F+ +  S     S + FDID FK IND +GH  GD 
Sbjct: 93  KISRYDYLTRIYNRRSLIELLEMEFLRNRRSSEGHFSFILFDIDDFKNINDIYGHGQGDT 152

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  +   L          GR GG+EFA     ++   A  +A  +++ I + + + +S 
Sbjct: 153 VLKGVGKTLASSVRKSDITGRFGGDEFAVILPYTTLDNAVTVAEKIKEKITSLRFSKNSK 212

Query: 214 PSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255
            SI IT+S G+ E   +  I T   +I  AD+ LY AKK G+N +
Sbjct: 213 ESIGITLSMGVIEVDSESKIDTFEKVIAEADKFLYCAKKRGKNTI 257


>gi|218458349|ref|ZP_03498440.1| putative sensory box/GGDEF family protein [Rhizobium etli Kim 5]
          Length = 267

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 87/176 (49%), Gaps = 23/176 (13%)

Query: 98  NRISQLSRI-------DCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNF 146
            R+ QL++        D LSGLLN    +S L    +  S    +   D+D FK +ND +
Sbjct: 37  RRLRQLAQAALYEAGHDSLSGLLNRQGLLSLLEELQDPASTPPRLYLVDLDGFKAVNDAW 96

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS---EQEAAILANDLRKII 203
           GH VGD +I  +S  L       +   RLGG+EFA   +G++   E E A+LA      +
Sbjct: 97  GHAVGDDLIRLVSKALTACHPEVVAAARLGGDEFALVHVGAATCDEMERAVLA------L 150

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
                NI  G +I +  S G A R    EP+  ++ RAD ALY AK +GR + + +
Sbjct: 151 FAEPFNI-DGRTIEVGASIGAAARDGDIEPLE-LLRRADMALYRAKANGRGQAIEY 204


>gi|146342000|ref|YP_001207048.1| signaling protein [Bradyrhizobium sp. ORS278]
 gi|146194806|emb|CAL78831.1| putative signaling protein containing multidomains (CHASE/GGDE/EAL)
           [Bradyrhizobium sp. ORS278]
          Length = 837

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 93/179 (51%), Gaps = 11/179 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE----KLSIVFFDIDYFKQINDNF 146
           ++L ++  R+ +L++ D L+GL N + F+  +   N+    + ++   D+D FK +ND+ 
Sbjct: 360 QQLALANRRVLELAQTDALTGLANRAFFLEEMERINDDKNGRFTVFLLDLDRFKNVNDSL 419

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LANDLRKII- 203
           GH  GD+++  ++ +L         + RLGG+EFA    G  +Q  A   LA  + ++I 
Sbjct: 420 GHGAGDELLMQVAQRLRSQLRDEDVLARLGGDEFAVIQAGFDDQRTAAIELAQRITRLIA 479

Query: 204 ENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E  QI    G  + I  S GI+    H      ++ +AD ALY +K +GR+    + D+
Sbjct: 480 EPFQI---GGQRVEIGTSIGISLAPQHGRDQEHLLKKADLALYRSKSAGRSCYTLYDDV 535


>gi|145297796|ref|YP_001140637.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850568|gb|ABO88889.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 331

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 81/154 (52%), Gaps = 5/154 (3%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            QL+  D L+GLLN +A         E  +I F D+D FKQ+NDN GH  GD+++  L+ 
Sbjct: 153 QQLAHRDPLTGLLNRTALQRQFPQ--EFRAICFIDLDNFKQVNDNLGHRAGDELLIALTQ 210

Query: 161 QLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           ++       + +GRLGG+EF       S +     LA     +I ++   + +G    + 
Sbjct: 211 RVKACCDEGVKLGRLGGDEFVLLLPWHSDDPRPHHLAQQCVNVI-STPFELPNG-EAEVG 268

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +S GIA+   ++  ST   RADQA+Y  K+SG+ 
Sbjct: 269 LSMGIAQIRPQDDFSTARARADQAMYRVKRSGKR 302


>gi|77918544|ref|YP_356359.1| GGDEF domain-containing protein [Pelobacter carbinolicus DSM 2380]
 gi|77544627|gb|ABA88189.1| diguanylate cyclase with PAS/PAC sensor [Pelobacter carbinolicus
           DSM 2380]
          Length = 301

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 3/156 (1%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           +R++ L    CL G L  S  +     Y   + + F DID+FK +ND +GH  GD ++  
Sbjct: 143 DRLTGLPNRACLEGELQRS--LDEYKRYGWPVGLFFMDIDHFKAVNDTYGHERGDDILRL 200

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           ++  L         VGR GGEEF      ++      +A   R ++E S I +   P ++
Sbjct: 201 VATTLAHNCRASDIVGRWGGEEFVGLVRNATTASLLQVAERSRMLVEQSFIMVDGRP-LN 259

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +T+S G A     E  + ++ RAD  ++ +K  GRN
Sbjct: 260 VTLSVGAALVREGESAAGLVRRADHLMFESKHKGRN 295


>gi|59712168|ref|YP_204944.1| GGDEF domain-containing protein [Vibrio fischeri ES114]
 gi|59480269|gb|AAW86056.1| GGDEF domain protein [Vibrio fischeri ES114]
          Length = 443

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 95/176 (53%), Gaps = 21/176 (11%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQI 142
           LKE  + +   ++L+  D L+G  N +A    L   ++++       S+++ DID+FK++
Sbjct: 262 LKEKNVEF---AELAHRDSLTGARNRNAVRDWLERMSQQVRWGKQTFSVIYIDIDFFKKV 318

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFG---TPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           ND+ GH  GD +   L + ++V+ G   +  F+ R GGEEF   +  +  Q+A   A  +
Sbjct: 319 NDDLGHQTGDDI---LREFVLVITGAIKSTDFLVRWGGEEFIVFSPNNDLQQAEEKAELI 375

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           R+ +E+     +      +T S G+AE    E I+ +I RAD AL+ AK +GRN V
Sbjct: 376 RRTVEHHLWCHNE----RLTCSLGVAE-MKDERITEVIARADDALFKAKNAGRNNV 426


>gi|148547279|ref|YP_001267381.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida F1]
 gi|148511337|gb|ABQ78197.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida F1]
          Length = 699

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 89/181 (49%), Gaps = 14/181 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVF-FDIDYFKQIND 144
           E   ++ +I  ++  D L+GL N + F   L      GS N KL+     D+D FK IND
Sbjct: 264 EELAAHAQIHHMAHHDALTGLPNRTLFHERLRQALLRGSENAKLTAALCLDLDNFKNIND 323

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKII 203
           + GH  GDK++  L  +L         + RLGG+EFA    G   ++AA   A  L K I
Sbjct: 324 SLGHAFGDKLLRELGKRLRRELREHDTLARLGGDEFAVVLTGLEGRDAACNTAQRLIKAI 383

Query: 204 ENS-QINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
               QI    G    + +S GIA      +    ++  AD ALY AK++GRNR  CF D+
Sbjct: 384 SPPFQI---EGHQFVVGVSIGIAIAPDDNDQAEQLLGYADMALYQAKRNGRNRYECF-DV 439

Query: 262 E 262
           E
Sbjct: 440 E 440


>gi|119776735|ref|YP_929475.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B]
 gi|119769235|gb|ABM01806.1| GGDEF domain-like protein [Shewanella amazonensis SB2B]
          Length = 641

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 81/175 (46%), Gaps = 17/175 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151
           ++ QLS  D L+GLLN  AF+                LS+   D+D+FK IND  GH VG
Sbjct: 446 KLQQLSDTDPLTGLLNRRAFLHQARQMQRLAERQQFPLSVALLDLDFFKAINDKHGHHVG 505

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+   +            +GR GGEEF    L ++E++  I A  L+++         
Sbjct: 506 DAVLRAFAHGAKTTLRQTDIIGRFGGEEF---ILLATEKDPIIFAGLLQRVQRAFTHACQ 562

Query: 212 SGPSI--HITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             P+I   ++ SAGIA            I   I +AD+ LY AK +GR +V   S
Sbjct: 563 QDPAIGFSVSFSAGIAALEDNGATEIPDIEEAIRQADELLYRAKANGRQQVCTDS 617


>gi|315126261|ref|YP_004068264.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudoalteromonas sp. SM9913]
 gi|315014775|gb|ADT68113.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudoalteromonas sp. SM9913]
          Length = 575

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 20/178 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            ++  ++  D L+GL +    I  L    +  +KL++ + D+D FK IND +GH  GD V
Sbjct: 142 KKLHDMAHYDSLTGLASRPILIDQLQQAITSEQKLAVAYLDLDNFKPINDKYGHETGDFV 201

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEF------AAAALGSSE---QEAAILANDLRKIIEN 205
           +  ++ +L         + R+GG+EF      AA  +   E   QE  I  ND  K+ E 
Sbjct: 202 LKTIAQRLKSTLRKEDTLARIGGDEFIFLLRGAAHTIQEYETLLQEVLIEVNDPIKLAEF 261

Query: 206 SQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           S        S+ I++S G+A           I+ RADQ +Y AK+SG NR++ F   E
Sbjct: 262 S-------CSVQISVSIGVALPSDDGLTCDDILRRADQTMYQAKRSGTNRILFFDPEE 312


>gi|299535394|ref|ZP_07048716.1| inner membrane protein [Lysinibacillus fusiformis ZC1]
 gi|298729155|gb|EFI69708.1| inner membrane protein [Lysinibacillus fusiformis ZC1]
          Length = 505

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 109/217 (50%), Gaps = 11/217 (5%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           Y+    F  +E  L +N     I ++I+LL  +I   ++ ++    ++   L+  D L+G
Sbjct: 285 YVKFINFTKME-ALQKNTKQFWILLSIALLTSFIMLLVINKIL---SKTIHLATFDPLTG 340

Query: 112 LLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           + N + +I  + S   K       ++  D+D FKQ+ND FGH  GD ++   +  L  V 
Sbjct: 341 VYNRATYIRKIDSLLRKRKMNVPGLLLIDLDNFKQVNDQFGHVEGDHILIETAKILKHVV 400

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIA 225
               FV R GG+EFA     ++E++   +A D+   I + + +  +     + ++S G A
Sbjct: 401 KQSGFVVRFGGDEFAIVLYDTTEEQMQHMAEDILTQIRSVRYDGQASEKWSVLSVSMGGA 460

Query: 226 ERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSDI 261
              H E     ++ RAD+ALY +K +G+++   ++++
Sbjct: 461 IYNHAEDTEMSLFERADKALYQSKNAGKDQYSSYAEV 497


>gi|226939478|ref|YP_002794551.1| hypothetical protein LHK_00549 [Laribacter hongkongensis HLHK9]
 gi|226714404|gb|ACO73542.1| GGDEF domain protein [Laribacter hongkongensis HLHK9]
          Length = 601

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 8/161 (4%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G LN            S      + L++   DID FKQ+ND +GH  GD  + ++ 
Sbjct: 440 DQLTGALNRRGLDEQFMREASRAERSGQPLALALIDIDNFKQLNDRYGHRTGDNALRYVV 499

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           D +         V R GGEEF      +S+++A  L   L++ +  +   +++   + IT
Sbjct: 500 DLVSERVRPSDAVARFGGEEFVVLMPDTSQEQALELIERLQRDLTKT-FFLANEDRLVIT 558

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            SAGIA     E    +I RAD A+Y AK +G+NRV+  +D
Sbjct: 559 FSAGIAVWSAGESELDLIERADHAMYRAKLAGKNRVLAATD 599


>gi|254975836|ref|ZP_05272308.1| putative signaling protein [Clostridium difficile QCD-66c26]
 gi|255314965|ref|ZP_05356548.1| putative signaling protein [Clostridium difficile QCD-76w55]
 gi|255517640|ref|ZP_05385316.1| putative signaling protein [Clostridium difficile QCD-97b34]
 gi|255650750|ref|ZP_05397652.1| putative signaling protein [Clostridium difficile QCD-37x79]
          Length = 391

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 110/245 (44%), Gaps = 30/245 (12%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK-ELFIS 96
           F  +VI     FLF     P  G++ I     S ++ +  I+ L  ++S  + +  +F  
Sbjct: 147 FGESVIVFGGCFLFLNLFLP--GIQTIPGNEFSNIVNTFFITSLAIFVSTMLYRNRVFTY 204

Query: 97  YNRI---SQLSRIDCLSGLLNHSAFISSLGSYN-------------------EKLSIVFF 134
           Y+++    Q   I  ++ LLN       L   N                   E ++ +  
Sbjct: 205 YDKLLISQQYEEISHINNLLNDKVMTDDLTKMNNRRYLEDILQKKLISHANQEPITGMMI 264

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEA 192
           DIDYFKQ NDN+GH  GD  +  ++ ++++ F +       R GGEEF        E +A
Sbjct: 265 DIDYFKQFNDNYGHQKGDYCLQNIA-KVILDFTSSENEHAIRYGGEEFFICIFNCDETDA 323

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKS 250
            + +  LRKIIE+        P   +T+S G+  +  ++ I+    I   D+ALY AK+ 
Sbjct: 324 KLKSECLRKIIESCNFERDDVPLKCVTVSIGVYTKKIEKAITLNEFISNCDKALYTAKEQ 383

Query: 251 GRNRV 255
           GRN V
Sbjct: 384 GRNCV 388


>gi|192359514|ref|YP_001981267.1| putative signal transduction protein [Cellvibrio japonicus Ueda107]
 gi|190685679|gb|ACE83357.1| putative signal transduction protein [Cellvibrio japonicus Ueda107]
          Length = 867

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 21/171 (12%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  L+  D L+GL N   F +SL          + +  +V+ D+D+FK IND+FGH  G
Sbjct: 432 QLKYLAMHDSLTGLNNRHFFETSLKQLTADALRNHRQHGLVYIDLDHFKVINDSFGHQKG 491

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++  L      P    RLGG+EFA      S+Q+A   A D++++   S+ N  
Sbjct: 492 DEVLREVAHLLRRRIRRPDIFCRLGGDEFAVLLHDVSQQQAEEFARDIQQLA--SEFNFQ 549

Query: 212 S-------GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S       G SI +T+     ER  +      + RAD ALYVAK  GRN +
Sbjct: 550 SQGQRINLGCSIGLTLINNSTERAEEH-----LMRADIALYVAKGRGRNLI 595


>gi|153826672|ref|ZP_01979339.1| GGDEF family protein [Vibrio cholerae MZO-2]
 gi|262191640|ref|ZP_06049818.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
 gi|149739534|gb|EDM53762.1| GGDEF family protein [Vibrio cholerae MZO-2]
 gi|262032482|gb|EEY51042.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
          Length = 443

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 34/172 (19%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+G +N       L             +S++F DIDYFKQ+ND +GH +GD +
Sbjct: 272 EMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDL 331

Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KII 203
           +             SD+LV          R GGEEF      ++ ++A  LA  LR KI 
Sbjct: 332 LREFALVISREIRESDKLV----------RWGGEEFVVFCAQTTLEQAIELAERLRAKIA 381

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++S I+  +     IT S GIA+    E I+  + RAD+ALY AK+ GRNR+
Sbjct: 382 DHSWIHGGA-----ITCSIGIAQ-MGDERITETVSRADEALYRAKRLGRNRI 427


>gi|116051327|ref|YP_789841.1| hypothetical protein PA14_21190 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115586548|gb|ABJ12563.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 785

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 100/186 (53%), Gaps = 22/186 (11%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L +L  ++  + Q++R D L+GL N +AF       + +     + L+++F D+D+FK
Sbjct: 331 ALLNQLDHAHASLRQMARYDSLTGLQNRTAFNEVFVQHLENCRLRGKGLAVMFLDLDHFK 390

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL- 199
           +IND+ GH  GD+++  +S+++  V      V R  G+EF   A  + + EA IL+  L 
Sbjct: 391 RINDSLGHDSGDELLKIVSERIRSVLRDSDVVARFAGDEFCVLADLTQDHEAHILSQRLM 450

Query: 200 RKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRN 253
           +K+ E   ++   G ++ +T S G++      E+C +     ++  A  AL+ +K  GRN
Sbjct: 451 QKMKEPIALD---GRTLVMTASVGVSLYPNDGEQCEE-----LLKNAGLALHQSKACGRN 502

Query: 254 RVVCFS 259
               FS
Sbjct: 503 NAQFFS 508


>gi|21112594|gb|AAM40815.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris
            str. ATCC 33913]
 gi|66574354|gb|AAY49764.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris
            str. 8004]
          Length = 1050

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 8/174 (4%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
            +L  L I  +   + +  D L+GL N   F  +L             L +   DID+FK+
Sbjct: 875  LLTRLRIKSDAFERQAHEDALTGLPNRRHFDEALARDLSRARRSGRPLVLAILDIDHFKR 934

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            IND + H  GD V+  +   L           RLGGEEFA     ++ ++A  L   +R 
Sbjct: 935  INDQYSHASGDAVLHDVGVLLTAAARASDLPARLGGEEFALLLSDTTLEQAHALCLRIRA 994

Query: 202  IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               +++ +      + +T SAG+AE   +E  S+++ RAD ALY AK +GR+R+
Sbjct: 995  QF-HARHDWGGVEGLQVTFSAGLAELGEEESGSSLMQRADHALYEAKSAGRDRI 1047


>gi|77747817|ref|NP_636891.2| hypothetical protein XCC1520 [Xanthomonas campestris pv. campestris
            str. ATCC 33913]
 gi|77761246|ref|YP_243784.2| hypothetical protein XC_2715 [Xanthomonas campestris pv. campestris
            str. 8004]
          Length = 1010

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 8/174 (4%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
            +L  L I  +   + +  D L+GL N   F  +L             L +   DID+FK+
Sbjct: 835  LLTRLRIKSDAFERQAHEDALTGLPNRRHFDEALARDLSRARRSGRPLVLAILDIDHFKR 894

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            IND + H  GD V+  +   L           RLGGEEFA     ++ ++A  L   +R 
Sbjct: 895  INDQYSHASGDAVLHDVGVLLTAAARASDLPARLGGEEFALLLSDTTLEQAHALCLRIRA 954

Query: 202  IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               +++ +      + +T SAG+AE   +E  S+++ RAD ALY AK +GR+R+
Sbjct: 955  QF-HARHDWGGVEGLQVTFSAGLAELGEEESGSSLMQRADHALYEAKSAGRDRI 1007


>gi|114319326|ref|YP_741009.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225720|gb|ABI55519.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 437

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 75/156 (48%), Gaps = 11/156 (7%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G LN      +L    E+       LS+   D+D+FK++ND +GH VGD+V+  L 
Sbjct: 279 DQLTGALNRRRIEQALAREMERSNRHGDALSVALLDVDHFKRVNDQYGHNVGDRVLQTLI 338

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +          +GR GGEEF      +    A  LA  LR  I       + G    +T
Sbjct: 339 RRCKENLRAVDLIGRWGGEEFLIVLPDTDRHSALQLAERLRARIAERARADTHG----VT 394

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S G+A     E +  ++ RAD ALY AK  GRNRV
Sbjct: 395 VSLGLASFRPGEGLDQLVKRADDALYRAKDRGRNRV 430


>gi|15641198|ref|NP_230830.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121587807|ref|ZP_01677566.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|153819081|ref|ZP_01971748.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|153823230|ref|ZP_01975897.1| GGDEF family protein [Vibrio cholerae B33]
 gi|227081357|ref|YP_002809908.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|229505221|ref|ZP_04394731.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229511109|ref|ZP_04400588.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229518228|ref|ZP_04407672.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229608240|ref|YP_002878888.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254848311|ref|ZP_05237661.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255745593|ref|ZP_05419541.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262158333|ref|ZP_06029449.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|298498713|ref|ZP_07008520.1| GGDEF family protein [Vibrio cholerae MAK 757]
 gi|9655662|gb|AAF94344.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121547971|gb|EAX58052.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|126510364|gb|EAZ72958.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|126519244|gb|EAZ76467.1| GGDEF family protein [Vibrio cholerae B33]
 gi|227009245|gb|ACP05457.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|229344943|gb|EEO09917.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229351074|gb|EEO16015.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229357444|gb|EEO22361.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229370895|gb|ACQ61318.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254844016|gb|EET22430.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255736668|gb|EET92065.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262029774|gb|EEY48422.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|297543046|gb|EFH79096.1| GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 443

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 34/172 (19%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+G +N       L             +S++F DIDYFKQ+ND +GH +GD +
Sbjct: 272 EMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDL 331

Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KII 203
           +             SD+LV          R GGEEF      ++ ++A  LA  LR KI 
Sbjct: 332 LREFALVISREIRESDKLV----------RWGGEEFVVFCAQTTLEQAIELAERLRAKIA 381

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++S I+  +     IT S GIA+    E I+  + RAD+ALY AK+ GRNR+
Sbjct: 382 DHSWIHGGA-----ITCSIGIAQ-MGDERITETVSRADEALYRAKRLGRNRI 427


>gi|262171598|ref|ZP_06039276.1| GGDEF family protein [Vibrio mimicus MB-451]
 gi|261892674|gb|EEY38660.1| GGDEF family protein [Vibrio mimicus MB-451]
          Length = 384

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 108/226 (47%), Gaps = 17/226 (7%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF---- 94
           +A V+ I  + L Y+ L  +  L  + V   S ++I    +L    I G++L  LF    
Sbjct: 161 LAAVLAIMMVML-YVPLVAYQTLPLMAVFRASTIVIQ---NLFFFIILGTMLM-LFLFEE 215

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           I ++R+  +   D L+G  N   F       L   +    +   DID+FKQIND++GH +
Sbjct: 216 IEWHRLRSIR--DELTGSFNRRYFKEQVQRQLNQSDTPYVVALVDIDHFKQINDSYGHDM 273

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VI F+  +L  +  T   V R GGEEFA  A  +  +    + ND+   I  SQ   
Sbjct: 274 GDAVITFVVRKLESLNLTDCLVARYGGEEFAVFAREADAERVKEVLNDVCDAI--SQGFC 331

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               S+ +++S G             + +AD A+Y AK+ GRNRV+
Sbjct: 332 IENQSLKVSVSIGAVLFDTPFDYGEALRKADSAMYQAKEQGRNRVM 377


>gi|92113846|ref|YP_573774.1| diguanylate cyclase with PAS/PAC sensor [Chromohalobacter
           salexigens DSM 3043]
 gi|91796936|gb|ABE59075.1| diguanylate cyclase with PAS/PAC sensor [Chromohalobacter
           salexigens DSM 3043]
          Length = 733

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 13/161 (8%)

Query: 107 DCLSGLLNHSAFISSLG----SYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN   F   L     ++ E+    +++ FD+D FK IND+ GH +GD+++  ++
Sbjct: 571 DPLTGLLNRRGFDRRLNDTFMAFKERGDVAALILFDLDSFKPINDDGGHALGDEMLDAIA 630

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         + RLGG+EFA    G   Q+A  +A+ +R  +    + +  G    +T
Sbjct: 631 RCLEGCVRRDDHLARLGGDEFAILLPGCGHQQAVRIADKVRHAVSELSV-VQDGKRYRVT 689

Query: 220 ISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVC 257
            S G++  C     +    ++ RAD A Y AK  G+NR+V 
Sbjct: 690 ASLGVS--CLGSDDDEAQAVVKRADAASYEAKAQGKNRMVA 728


>gi|46199699|ref|YP_005366.1| putative response regulator protein [Thermus thermophilus HB27]
 gi|46197325|gb|AAS81739.1| putative response regulator protein [Thermus thermophilus HB27]
          Length = 531

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 13/161 (8%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N       L         Y   +S+V  DID FK +ND +GHPVGD+V+  L 
Sbjct: 373 DPLTGLFNRRGLEVELPKLLALSRRYRAPVSVVMLDIDRFKAVNDTYGHPVGDEVLRRLG 432

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L           R GGEEF     G+  + A  +   +R+   + ++     P   +T
Sbjct: 433 RILKQSVRKEDLAVRYGGEEFLLVLFGAEREAAKEVVERIRERFRSERVAPIPYP---LT 489

Query: 220 ISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +SAGIA       +E +   I +AD AL  AK++GR+RV  
Sbjct: 490 LSAGIAGGEVPEGRETLEEWILKADYALLRAKETGRDRVTL 530


>gi|90423710|ref|YP_532080.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
 gi|90105724|gb|ABD87761.1| diguanylate cyclase (GGDEF domain) [Rhodopseudomonas palustris
           BisB18]
          Length = 735

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 79/156 (50%), Gaps = 11/156 (7%)

Query: 107 DCLSGLLNHSAFISSLGS----YNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N   F   L +    +N +    S +  DID+FK+IND  GH +GD+V+  LS
Sbjct: 567 DPLTGMFNRRVFNEGLAAELVRFNRQQTPFSSLLCDIDHFKEINDVHGHLMGDQVLVHLS 626

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L        F+ R GGEEF    +G+ +  A   A  LR  I  +  +       ++T
Sbjct: 627 RILSRSVRQTDFLARWGGEEFGILLVGADQTAAVEFAEKLRTTIAYTVFDDVG----NLT 682

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+AE    +   +++ R D ALY AK +GRNRV
Sbjct: 683 CSFGVAECVLGDTPESLLARVDNALYRAKMNGRNRV 718


>gi|119487037|ref|ZP_01620909.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]
 gi|119455966|gb|EAW37100.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]
          Length = 242

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 98/194 (50%), Gaps = 14/194 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFK 140
              +L++L      +  L+ +D L+ L N   F + L    EK     LS++  D+D+FK
Sbjct: 38  QNQMLQQLQSENKELKYLANLDELTRLANRRKFYAYLYEEWEKCSEQSLSVIICDVDFFK 97

Query: 141 QINDNFGHPVGD---KVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAIL 195
             ND +GH  GD   K IA    + V     P    V R GGEEFA        ++A  +
Sbjct: 98  AYNDTYGHLAGDVTLKQIAEAIQKAVQEILDPNSFLVARYGGEEFAVILPQLETEQALEI 157

Query: 196 ANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGR 252
           A  +R  +   +I +  S  S  +T+S G+A R  ++ +S   ++  AD++LY AK  GR
Sbjct: 158 AEQIRSHVAALKIPHKQSKVSSCVTLSLGVATRKPEDKLSPLELLMNADKSLYKAKSKGR 217

Query: 253 NRVVCFSDIENNTC 266
           NRVV +S +++ +C
Sbjct: 218 NRVV-YSYLQHRSC 230


>gi|157963040|ref|YP_001503074.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157848040|gb|ABV88539.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
          Length = 343

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 84/168 (50%), Gaps = 19/168 (11%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDK 153
           +S LS  D L+G LN     +SL + +EK        I   DIDYFK +ND  GH +GD+
Sbjct: 173 LSYLSTRDSLTGALNRHQLDASLIAASEKAKMDQATCIAAIDIDYFKDVNDLHGHDMGDQ 232

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           VI  +   +         + RLGG+EF      ++  E+A+      KI  N    ++ G
Sbjct: 233 VIKTVVKLINSHCRKTDLLFRLGGDEFLLL-FDNTNAESAL------KITRNIGQKVAEG 285

Query: 214 -----PSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                P +  +T+S GIAE    E +   + RAD ALY AK +GRN+V
Sbjct: 286 IVEAYPEVDKVTLSTGIAESIANEEVEAWVKRADMALYKAKLAGRNQV 333


>gi|77920131|ref|YP_357946.1| GGDEF domain-containing protein [Pelobacter carbinolicus DSM 2380]
 gi|77546214|gb|ABA89776.1| GGDEF domain containing protein [Pelobacter carbinolicus DSM 2380]
          Length = 648

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 7/171 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
           L +S  R  +L+  D L+GL N   F + L          N+  +++  DID FK  ND 
Sbjct: 458 LRVSERRHMELAFTDALTGLFNMRYFRTQLDLAIQCAEPLNQSFTLMMMDIDNFKLFNDR 517

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD+V+  L   +  V        R GGEEFA    G   Q A  +   L+  +  
Sbjct: 518 YGHLQGDQVLRQLGQMIGSVIREKDVACRYGGEEFAVILPGGDFQTAVDIYTRLQGTLLQ 577

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            Q +        +T+S G+AE    E    +I RAD A+Y AK+ GR+++V
Sbjct: 578 WQEHEKESLISLVTLSVGVAEYFPGEHADDLIARADSAMYEAKEGGRDQLV 628


>gi|147671442|ref|YP_001215230.1| GGDEF family protein [Vibrio cholerae O395]
 gi|262169120|ref|ZP_06036813.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|146313825|gb|ABQ18365.1| GGDEF family protein [Vibrio cholerae O395]
 gi|262022401|gb|EEY41109.1| GGDEF family protein [Vibrio cholerae RC27]
          Length = 303

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 15/170 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLN---------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142
           +++ +Y  I   S  D L+GLLN         H+  I+     N KL I   DID+FK I
Sbjct: 132 KIYRNYTVILHESERDKLTGLLNRRTLEDRLRHTFAINPSTEENHKLWIAMLDIDHFKAI 191

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+FGH +GD+++   + Q+   FG    + R GGEEF       +E +     +  R+ 
Sbjct: 192 NDHFGHMIGDEILLMFAQQMQHYFGPSSQLFRFGGEEFVIIFSSGNEPQIKQQLDGFRQ- 250

Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
               QI   + P I  ++ SAG       + + TI+  AD+ALY AK+ G
Sbjct: 251 ----QIRRHNFPRIGELSFSAGFCSLRPGDYLPTILDHADKALYYAKEHG 296


>gi|289662906|ref|ZP_06484487.1| hypothetical protein XcampvN_07423 [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 517

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 88/181 (48%), Gaps = 20/181 (11%)

Query: 96  SYNRISQLSRI---DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDN 145
           S NR+  L+     D L+G+ N     ++L    E        LSI F D+D FK++ND 
Sbjct: 327 SENRMRHLAEQASRDALTGVFNRHQLGTALTHEFELASRQGWLLSIAFIDLDDFKRVNDA 386

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKII 203
            GH VGD+V+   +  L  +  T   V R GGEEF    L  +  +AA++  +  L +  
Sbjct: 387 HGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEF-LVILPKTPADAALMVIERILTETA 445

Query: 204 ENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 +  GP +HIT SAG+A     ER   E I  ++  AD  LY +K  GRNRV  +
Sbjct: 446 RTPMAQLPGGP-LHITFSAGLATHGGVER-QFESIEHLLQAADSTLYRSKHRGRNRVTAY 503

Query: 259 S 259
            
Sbjct: 504 D 504


>gi|240140595|ref|YP_002965075.1| putative diguanylate cyclase (GGDEF) [Methylobacterium extorquens
           AM1]
 gi|240010572|gb|ACS41798.1| putative diguanylate cyclase (GGDEF) [Methylobacterium extorquens
           AM1]
          Length = 390

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 91/177 (51%), Gaps = 20/177 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVG 151
            R ++++R D L+GL N    ++++G+        + L  +  DID+FK+ ND  GH  G
Sbjct: 216 ERNAEMARTDQLTGLFNRH-HLATIGADLIPKRDTQSLGALLIDIDHFKRFNDTQGHLAG 274

Query: 152 DKVIAFLSDQLVVVFGTPM-----FVG---RLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ I  +SD LV     P       VG   R GGEEF     G     AA L   +R+ +
Sbjct: 275 DRCIRTVSD-LVREMLAPANENKPPVGTAVRFGGEEFLVLLPGMDAARAAALGEAIRRRV 333

Query: 204 ENSQI-NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           E   I +   GP+  +T+S G+A+  + H E + T++  AD ALY AK  GRNRV  
Sbjct: 334 EGVGIPHPGLGPNAVVTLSIGVADWKKGHTE-LDTLVNAADAALYQAKNLGRNRVAV 389


>gi|154269333|gb|ABS72183.1| putative diguanylate cyclase/phosphodiesterase [Salmonella enterica
           subsp. enterica serovar Weltevreden]
          Length = 370

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 101/204 (49%), Gaps = 27/204 (13%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG--------LLNHSAFI 119
            LSL +I +   LL  ++S     +L     R+  +S  D ++G        +L  + F 
Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYIRRHWEILLRNEFD 232

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
            S   + E  +++  DID+FK  ND +GH VGD+ I  L+ QL +       +GR GG+E
Sbjct: 233 HSRRHHREA-TLLIIDIDHFKSTNDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDE 291

Query: 180 FAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII- 237
           FA    G+   ++AI A  + ++ E  + + +   P + + IS G+A      P++  I 
Sbjct: 292 FAVIMCGTPA-DSAITA--MSRVHERLNTLCLPGAPQVMLRISVGVA------PLTPQIG 342

Query: 238 -YR-----ADQALYVAKKSGRNRV 255
            YR     AD ALY AK +GRNR 
Sbjct: 343 HYREWLKSADMALYKAKNAGRNRT 366


>gi|89072583|ref|ZP_01159155.1| putative c-di-GMP phosphodiesterase A-related protein
           [Photobacterium sp. SKA34]
 gi|89051687|gb|EAR57140.1| putative c-di-GMP phosphodiesterase A-related protein
           [Photobacterium sp. SKA34]
          Length = 690

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 84/172 (48%), Gaps = 17/172 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +I QL ++D L+GLLN   F   L         + +++ DID FK IND+ GH +GDKV+
Sbjct: 263 QIEQLVQMDPLTGLLNRYGFTRQLDQLMKAETPVVMLYIDIDNFKNINDSLGHHIGDKVL 322

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP- 214
             ++ +L  +      +G L G+EF A  L + E E         +II    I + + P 
Sbjct: 323 QEIAQRLRRLLPETAILGYLSGDEF-AILLPNPEHERT------GEIISEQIIALVNQPF 375

Query: 215 -----SIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                  H+  S G +    H      ++  AD A+Y AK  GRNR+V F+D
Sbjct: 376 ELRHFRKHLACSIGMVTSPGHGNDARMMLQNADTAMYEAKHRGRNRLVEFND 427


>gi|229529727|ref|ZP_04419117.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229333501|gb|EEN98987.1| GGDEF family protein [Vibrio cholerae 12129(1)]
          Length = 443

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 34/172 (19%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+G +N       L             +S++F DIDYFKQ+ND +GH +GD +
Sbjct: 272 EMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDL 331

Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KII 203
           +             SD+LV          R GGEEF      ++ ++A  LA  LR KI 
Sbjct: 332 LREFALVISREIRESDKLV----------RWGGEEFVVFCAQTTLEQAIELAERLRAKIA 381

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++S I+  +     IT S GIA+    E I+  + RAD+ALY AK+ GRNR+
Sbjct: 382 DHSWIHGGA-----ITCSLGIAQ-MGDERITETVSRADEALYRAKRLGRNRI 427


>gi|158334794|ref|YP_001515966.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158305035|gb|ABW26652.1| diguanylate cyclase domain protein [Acaryochloris marina MBIC11017]
          Length = 393

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 102/198 (51%), Gaps = 22/198 (11%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSI 131
           +LL+GY+    ++       ++ QL+ ID ++ + N   F +      ++       LS+
Sbjct: 201 TLLVGYLLMQFVRARQRLLEKVEQLATIDDVTQIANRRHFNAVFAQEWQRMLREQSCLSL 260

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEF----AAAALG 186
           +  D+D FK  ND++GH  GD  +  ++  +      P  F  R GGEEF        L 
Sbjct: 261 LLCDVDCFKAYNDHYGHQAGDSCLFQIAQTIHNCMRRPSDFAARYGGEEFVIILPHTQLS 320

Query: 187 SSEQEAAILANDLRKI-IENSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQ 242
            ++ +A ++  +L+K+ + +++ +IS   +I I I++GI +     H+     II +AD+
Sbjct: 321 GAQAQAQVIQENLQKLALAHAESSISDYVTISIGIASGIPQLELNAHQ-----IIEQADK 375

Query: 243 ALYVAKKSGRNRVVCFSD 260
           ALY AK  GRNR  CFS+
Sbjct: 376 ALYQAKAQGRNR-SCFSE 392


>gi|126699861|ref|YP_001088758.1| putative signaling protein [Clostridium difficile 630]
 gi|115251298|emb|CAJ69129.1| putative diguanylate kinase signaling protein [Clostridium
           difficile]
          Length = 391

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 111/245 (45%), Gaps = 30/245 (12%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK-ELFIS 96
           F  +VI     FLF     P  G++ I     S ++ +  I+ L  ++S  + +  +F  
Sbjct: 147 FGESVIVFGGCFLFLNLFLP--GIQTIPGNEFSNIVNTFFITSLAIFVSTMLYRNRVFTY 204

Query: 97  YNRI---SQLSRIDCLSGLLNHSAFISSLGSYN-------------------EKLSIVFF 134
           Y+++    Q   I  ++ LLN       L   N                   E ++ +  
Sbjct: 205 YDKLLISQQYEEISHINNLLNDKVMTDDLTKMNNRRYLEDILQKKLISHANQEPITGMMI 264

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEA 192
           DIDYFKQ NDN+GH  GD  +  ++ ++++ F +       R GGEEF       +E +A
Sbjct: 265 DIDYFKQFNDNYGHQKGDYCLQNIA-KVILDFTSSENEHAIRYGGEEFFICIFNCNEADA 323

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKS 250
            + +  LRKIIE+        P   +T+S G+  +  ++ I+    I   D+ALY AK+ 
Sbjct: 324 KLKSECLRKIIESCNFERDDVPLKCVTVSIGVYTKKIEKTITLNEFISNCDKALYTAKEQ 383

Query: 251 GRNRV 255
           GRN V
Sbjct: 384 GRNCV 388


>gi|90579795|ref|ZP_01235604.1| hypothetical protein VAS14_02496 [Vibrio angustum S14]
 gi|90439369|gb|EAS64551.1| hypothetical protein VAS14_02496 [Vibrio angustum S14]
          Length = 353

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 77/155 (49%), Gaps = 7/155 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKL-SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           S +D L+GLLN S+  + + S N  L ++   DID+FK IND +GH  GD  I   +  L
Sbjct: 189 SSVDMLTGLLNRSSLNNVINSNNHTLKALALLDIDHFKSINDAYGHDAGDGAIKAFASCL 248

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQ--EAAILANDLRKIIENSQINISSGPSIHITI 220
                      R GG+EF     G      +A  + + LR  +E   ++I   P    T+
Sbjct: 249 KENIRDTDVAFRWGGDEFLVLIRGQVNDNIDAYCVFDRLRTTVE--AMDIDGVP--KFTV 304

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S G         I T+I +AD ALY +KK+GRNRV
Sbjct: 305 SIGYCSYDSNVDIKTLIKQADLALYDSKKTGRNRV 339


>gi|89954507|gb|ABD83655.1| response regulator protein-like [Rickettsia honei]
          Length = 450

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 76/158 (48%), Gaps = 8/158 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F       I      + KL ++  DID FK +ND +GH  GDKV+  +S
Sbjct: 291 DGLTGLFNRRYFDIHLKQIIEKANKESIKLYLLMCDIDNFKHVNDTYGHQAGDKVLTIVS 350

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHI 218
             L         + R GGEEF          +A   A  +R  I+    +I      +  
Sbjct: 351 RILKNTLRVTDLIARFGGEEFTILLTDIDISKAIETAERVRVKIKYMNFHIEDQIEPLKT 410

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T+S G+ +   +E I + I RAD+A+Y AK +G+N+VV
Sbjct: 411 TVSIGVTKYKKEESIESFIERADKAMYEAKTTGKNKVV 448


>gi|323976594|gb|EGB71682.1| GGDEF domain-containing protein [Escherichia coli TW10509]
 gi|327253426|gb|EGE65064.1| diguanylate cyclase domain protein [Escherichia coli STEC_7v]
          Length = 289

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 124/251 (49%), Gaps = 40/251 (15%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYI----LVENLSLVIISITISLLLGYISGSI--- 89
           IF+  ++ + N++   +    + G+  I    ++ N+SL+ +S   S+   YIS +I   
Sbjct: 34  IFMWLILLLVNLYFNGLRCDIWNGVSVIAFCAVLYNISLLFMS-RYSVSTWYISRTIEVV 92

Query: 90  ---------LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLS--IVFFD 135
                    +  +F +      ++  D L+ + N + F + L + +   +K S  ++  D
Sbjct: 93  SKLTVMVIFMCHIFSALRVTKNIAHRDPLTNIFNRNYFFNELKAQSASAQKTSYCVMIMD 152

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQE 191
           ID+FK++ND +GHPVGD+VI      +V + G  +     + R+GGEEF      +  + 
Sbjct: 153 IDHFKKVNDTWGHPVGDQVIK----TVVSIIGKSIRPNDLLARVGGEEFGVLLTETDTES 208

Query: 192 AAILANDLRKIIE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALY 245
           A +LA  +R  +E     N +  I     + I+I A + +     P    IYR AD ALY
Sbjct: 209 AKVLAERIRANVERLTGDNPEYAIPQ--KVTISIGAVVTQGSALNP--NEIYRMADNALY 264

Query: 246 VAKKSGRNRVV 256
            AK++GRN++V
Sbjct: 265 EAKETGRNKIV 275


>gi|300114835|ref|YP_003761410.1| response regulator receiver modulated diguanylate cyclase
           [Nitrosococcus watsonii C-113]
 gi|299540772|gb|ADJ29089.1| response regulator receiver modulated diguanylate cyclase
           [Nitrosococcus watsonii C-113]
          Length = 327

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 14/181 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
            + + L ++  ++ QL+ +D L+G+ N   F  ++    ++       LS++  DID FK
Sbjct: 143 DLTRRLEMANEQLRQLTSLDDLTGIANRRQFEVTIHQEFQRAMRNKTALSLIMIDIDNFK 202

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GH  GD  +  ++  L  V   P   + R GGEEFA     +S + A+ +A  L
Sbjct: 203 VYNDIYGHQTGDNCLRRVAAALDSVLKRPNDLLARYGGEEFAVILPETSSKGASNIAESL 262

Query: 200 RKIIENSQI--NISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           R+ +E  +I  + +S  ++ +T+S G+A    +   EP + +I  ADQALY +K +GRN+
Sbjct: 263 RQAVEILKIPHSYASQNNLRVTVSLGVATLIPQRGDEP-TKLISVADQALYQSKHAGRNQ 321

Query: 255 V 255
           V
Sbjct: 322 V 322


>gi|257874943|ref|ZP_05654596.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
 gi|257809109|gb|EEV37929.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
          Length = 369

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 90/170 (52%), Gaps = 12/170 (7%)

Query: 97  YNRISQL--SRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           Y  +++L  S+ID L+G  N+  +   L    S  + ++I   D+D+FK++ND +GH  G
Sbjct: 195 YQVLAELANSKIDALTGCFNYGTYNHDLLQAVSQKKTVTIAMIDLDHFKKVNDRYGHIAG 254

Query: 152 DKVIAFLSDQLVVV----FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           ++++   + +        F       R GGEEF     G  +++       L + I +S 
Sbjct: 255 NELLRTFATRTTTFLEAHFAETFSFYRYGGEEFCVVIEGDVKEKTVAAMTTLCQTISSSM 314

Query: 208 INISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +++     +++S G+  +  CH + ++ +  RADQALY+AK+SGRNRV
Sbjct: 315 FPVANFEKGTMSLSCGVEASTVCHGDILAAV-ERADQALYLAKQSGRNRV 363


>gi|254506275|ref|ZP_05118418.1| ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219550755|gb|EED27737.1| ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 387

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 86/175 (49%), Gaps = 11/175 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           K L  +  ++ +LS  D L+ L N    I  L  Y       NE L  +  D DYFKQ+N
Sbjct: 193 KALSEANKQLEELSLTDSLTNLPNRRCAIRKLKVYWQESVQNNEPLVCIMIDADYFKQVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+++  LS  L   F +   V RLGG+EF      +  +    +A   R  +
Sbjct: 253 DTAGHDAGDRLLIELSQNLAHSFRSDDLVCRLGGDEFFVICPNTDLEGGLHIAEITRDRV 312

Query: 204 ENSQINISSGPSI-HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
             SQ+ +  G S+   +IS G+  R  +    + +I  AD A+Y+AK SGRN+V 
Sbjct: 313 --SQMLVPVGESVWRGSISVGVGVRTPNMNDYNDLIKVADNAVYLAKSSGRNQVA 365


>gi|153215333|ref|ZP_01949946.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|124114776|gb|EAY33596.1| GGDEF family protein [Vibrio cholerae 1587]
          Length = 443

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 34/172 (19%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+G +N       L             +S++F DIDYFKQ+ND +GH +GD +
Sbjct: 272 EMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDL 331

Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KII 203
           +             SD+LV          R GGEEF      ++ ++A  LA  LR KI 
Sbjct: 332 LREFALVISREIRESDKLV----------RWGGEEFVVFCAQTTLEQAIELAERLRAKIA 381

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++S I+  +     IT S GIA+    E I+  + RAD+ALY AK+ GRNR+
Sbjct: 382 DHSWIHGGA-----ITCSIGIAQ-MGDERITETVSRADEALYRAKRLGRNRI 427


>gi|322434508|ref|YP_004216720.1| diguanylate cyclase [Acidobacterium sp. MP5ACTX9]
 gi|321162235|gb|ADW67940.1| diguanylate cyclase [Acidobacterium sp. MP5ACTX9]
          Length = 460

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 101/217 (46%), Gaps = 24/217 (11%)

Query: 71  LVIISITISLLLGYISGSIL----KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY- 125
           L  +S+  S   GY+S  I     K L  +   + ++S ID L+ L N       L S  
Sbjct: 245 LAGMSLENSERRGYLSHMIADLQSKALTRANQELQRVSSIDKLTSLPNRRTLEERLASMW 304

Query: 126 ------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGE 178
                 N+ LS+V  D+D+FK IND FGH  GD+ +  +   L+  +       GR GGE
Sbjct: 305 VACHQLNDFLSVVLIDVDHFKSINDTFGHLSGDQTLRAIGAVLLHGLRNQDDLAGRFGGE 364

Query: 179 EFAAAALGSSEQEAAILANDLRKII----ENSQINISSGPSIHITISAGIAERCHKE--- 231
           EF      +   EA  +A+ +R ++      S+          +TIS G++  C+     
Sbjct: 365 EFLVLLPHTGPTEAIEVADRIRTLVAGAPPRSRRTDDKQDPWPVTISCGVSS-CNPRSGF 423

Query: 232 PISTIIYRADQALYVAKKSGRNRV---VCFS-DIENN 264
            I  ++  AD ALY AK+SGRNRV    C + D E N
Sbjct: 424 EIDDLLRLADAALYNAKRSGRNRVEYQACTAHDPEGN 460


>gi|299531700|ref|ZP_07045105.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298720416|gb|EFI61368.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 397

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 124/245 (50%), Gaps = 22/245 (8%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           +++ S+ F+ +  T   I ++ L Y     F    Y L+  +S++  +I  ++++  I+ 
Sbjct: 153 LLWLSMIFTAYTLTRPMIISL-LGYPDPRSFPRSPYWLLTLVSILNFAILFTVVMTVIAA 211

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
              KE   +  ++ +   +D L+ +LN  +F       ++ +  Y   ++++  DID+FK
Sbjct: 212 ---KE---TVGKLQKERDLDTLTQILNRRSFHEYALKILTDMRLY--PMAVLACDIDHFK 263

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GDKV+  +S  L         V R GGEEF    +  + ++A  +A  +R
Sbjct: 264 RINDTWGHEYGDKVLQLVSATLQNHVRERDLVARFGGEEFVILLIDIALRDAEEIAQRIR 323

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV----V 256
           + + +++  + SG    +T+S GI+       +   +  ADQ LY AK +GR++V    V
Sbjct: 324 QDLRSNKDLLLSG--TKLTMSFGISSITDPSQLDHALREADQLLYQAKNAGRDQVHVSGV 381

Query: 257 CFSDI 261
            + DI
Sbjct: 382 SYPDI 386


>gi|299134767|ref|ZP_07027959.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Afipia sp. 1NLS2]
 gi|298590577|gb|EFI50780.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Afipia sp. 1NLS2]
          Length = 904

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 15/164 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +RI+ ++R D L+ L N + F   +  +    E L+++  DID FKQ+ND  GH VGD++
Sbjct: 475 DRIAHMARYDALTDLPNRTMFRDHLDKMLKKEENLAVLSIDIDEFKQVNDTLGHFVGDEL 534

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS--- 211
           +  ++++L         V RLGG+EFA    G  E+      ++L  +IE     I    
Sbjct: 535 LVSIANRLSGCMERDDIVARLGGDEFAIIRHGVQER------SELIPLIERVHAAIRVPY 588

Query: 212 --SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252
             +G  ++   S GIA   C    +  ++  AD ALY AK SGR
Sbjct: 589 DCTGHHLNADASIGIAMSPCDGSELEGLLRNADLALYAAKGSGR 632


>gi|253995574|ref|YP_003047638.1| PAS/PAC sensor-containing diguanylate cyclase [Methylotenera
           mobilis JLW8]
 gi|253982253|gb|ACT47111.1| diguanylate cyclase with PAS/PAC sensor [Methylotenera mobilis
           JLW8]
          Length = 310

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 107/214 (50%), Gaps = 20/214 (9%)

Query: 62  EYILVENLSLVIISIT--ISLLLGYI-----SGSILKELFISYNRISQLSRIDCLSGLLN 114
           EY+ + ++  V+ +    +  L+G++       +  ++L +    + +LS  D L+G+ N
Sbjct: 98  EYVWIRDVVHVVRNAEGMVEALIGFMFDITERKNTEQKLIVLQKELEELSFKDALTGVYN 157

Query: 115 HSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
              F S +          ++ LS++  DIDYFKQ ND++GH  GD+ +  ++  L  V G
Sbjct: 158 RRMFDSVMEVEWANAKRNHQPLSLLMLDIDYFKQYNDHYGHIHGDECLKLVAKALSNV-G 216

Query: 168 TPM--FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGI 224
           T    F  R GGEEF      +    A ++A   R +I  +QI +  S  S  +T+S G+
Sbjct: 217 TRSRDFFARFGGEEFIVVLPETDAAAANMIAERCRSLIFKAQIPHEKSLVSQILTVSIGV 276

Query: 225 AE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +     H +    +I + D+ LY AK+ GRNR+ 
Sbjct: 277 STIIPAHSDQAIDLIAKVDRQLYQAKEKGRNRIA 310


>gi|229525824|ref|ZP_04415229.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|229339405|gb|EEO04422.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
          Length = 372

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 16/180 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L+    ++  LS  D L+GL N    +  L           +    V  DID FK +N
Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH VGDKV+  +++ L   F +   V RLGG+EF      ++      +A  + + I
Sbjct: 253 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETNTAGGVYIAEQVCRAI 312

Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   I++ +      ++S G+A      + H E    ++  ADQA+Y+AK SG+NRV  F
Sbjct: 313 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHE----LLRAADQAVYLAKNSGKNRVCAF 368


>gi|227081388|ref|YP_002809939.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|227009276|gb|ACP05488.1| GGDEF family protein [Vibrio cholerae M66-2]
          Length = 372

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 16/180 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L+    ++  LS  D L+GL N    +  L           +    V  DID FK +N
Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH VGDKV+  +++ L   F +   V RLGG+EF      ++      +A  + + I
Sbjct: 253 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETNTAGGVYIAEQVCRAI 312

Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   I++ +      ++S G+A      + H E    ++  ADQA+Y+AK SG+NRV  F
Sbjct: 313 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHE----LLRAADQAVYLAKNSGKNRVCAF 368


>gi|149908734|ref|ZP_01897395.1| putative transcriptional regulator [Moritella sp. PE36]
 gi|149808276|gb|EDM68215.1| putative transcriptional regulator [Moritella sp. PE36]
          Length = 406

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 7/161 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAF--ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +++ +++  D L+GL N   F    S  S +E  +I   DID+FK++NDN+GH  GD V+
Sbjct: 249 DKLYKMANQDALTGLWNRRYFFSQHSSSSTSEHKNIAMLDIDFFKKVNDNYGHDGGDTVL 308

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +S QL   F   + V R GGEEF   +  S   +       +R  IE   +   +   
Sbjct: 309 VAISQQLQHHFSDAI-VARFGGEEFCIQS-NSDRADFVPQLELIRHKIEQLTMK-HNDEE 365

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           I ITIS G++     +PI  +I  AD  LY AK +GRN+VV
Sbjct: 366 IKITISIGVS--FGNKPIDEMISEADARLYKAKTNGRNQVV 404


>gi|34558149|ref|NP_907964.1| signal transduction response regulator [Wolinella succinogenes DSM
           1740]
 gi|34483868|emb|CAE10864.1| SIGNAL TRANSDUCTION RESPONSE REGULATOR-CheY like receiver and GGDEF
           domain [Wolinella succinogenes]
          Length = 501

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 17/170 (10%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  LS  D L+ + N  A        IS      +  S+V FDID FK++ND +GH  GD
Sbjct: 339 LEHLSFFDHLTQIANRRALEERIRKSISRFELERQSFSMVIFDIDDFKRVNDTYGHGAGD 398

Query: 153 KV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +V   IA L+ +   + G  M  GR GGEEF      +S   A  +A  LR+ I     +
Sbjct: 399 EVLKQIARLAKE--SIRGEDM-AGRWGGEEFVIYLHHASISSAHEIAERLRQKIARHAFD 455

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               P   +T S G++E        ++I RAD+ALY AK+ G+N+ +  S
Sbjct: 456 ----PRFKVTCSFGVSEFREGMDFDSLISRADEALYEAKRQGKNQTILAS 501


>gi|319651729|ref|ZP_08005855.1| hypothetical protein HMPREF1013_02467 [Bacillus sp. 2_A_57_CT2]
 gi|317396548|gb|EFV77260.1| hypothetical protein HMPREF1013_02467 [Bacillus sp. 2_A_57_CT2]
          Length = 549

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 9/142 (6%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            E LS++  DID+FK++ND +GH  G++++  L+ +L  +        R GGEEF     
Sbjct: 406 REFLSLIILDIDHFKKVNDTYGHQSGNEILCELAGRLANLIDEAGIAARYGGEEFVVLMP 465

Query: 186 GSSEQEAAILANDLRKIIENS----QINI---SSGPSIHITISAGIAERCHKEPIS-TII 237
            +S+++    A  +R+ I N     + NI   SS   ++IT S G+A        S  +I
Sbjct: 466 DTSKEDTLAWAELIRQTIANRPFILKQNIDGSSSSTKVYITASIGVAAAPEDADDSLALI 525

Query: 238 YRADQALYV-AKKSGRNRVVCF 258
             AD+ALYV AK++GRNRV  +
Sbjct: 526 RHADRALYVGAKRAGRNRVAEY 547


>gi|229515566|ref|ZP_04405025.1| GGDEF family protein [Vibrio cholerae TMA 21]
 gi|229347335|gb|EEO12295.1| GGDEF family protein [Vibrio cholerae TMA 21]
          Length = 443

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 34/172 (19%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+G +N       L             +S++F DIDYFKQ+ND +GH +GD +
Sbjct: 272 EMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDL 331

Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KII 203
           +             SD+LV          R GGEEF      ++ ++A  LA  LR KI 
Sbjct: 332 LREFALVISREIRESDKLV----------RWGGEEFVVFCAQTTLEQAIELAERLRAKIA 381

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++S I+  +     IT S GIA+    E I+  + RAD+ALY AK+ GRNR+
Sbjct: 382 DHSWIHGGA-----ITCSIGIAQ-MGDERITETVSRADEALYRAKRLGRNRI 427


>gi|229520386|ref|ZP_04409811.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
 gi|229525795|ref|ZP_04415200.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|229339376|gb|EEO04393.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|229342484|gb|EEO07477.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
          Length = 443

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 34/172 (19%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+G +N       L             +S++F DIDYFKQ+ND +GH +GD +
Sbjct: 272 EMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDL 331

Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KII 203
           +             SD+LV          R GGEEF      ++ ++A  LA  LR KI 
Sbjct: 332 LREFALVISREIRESDKLV----------RWGGEEFVVFCAQTTLEQAIELAERLRAKIA 381

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++S I+  +     IT S GIA+    E I+  + RAD+ALY AK+ GRNR+
Sbjct: 382 DHSWIHGGA-----ITCSIGIAQ-MGDERITETVSRADEALYRAKRLGRNRI 427


>gi|158426062|ref|YP_001527354.1| putative signal transduction protein [Azorhizobium caulinodans ORS
           571]
 gi|158332951|dbj|BAF90436.1| putative signal transduction protein [Azorhizobium caulinodans ORS
           571]
          Length = 443

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 78/165 (47%), Gaps = 13/165 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVG 151
           R+   +  D L+GL N  AF +  G   E         S+V FD+D FKQ+ND +GHP G
Sbjct: 256 RLRHAADTDFLTGLFNRRAFFAQGGQQAEACRLARHPYSVVIFDLDDFKQVNDGYGHPAG 315

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQIN 209
           D V+   +             GRLGGEEFA    G   + A   A   R++++       
Sbjct: 316 DAVLRAFALAARECLSPEDVAGRLGGEEFALVLPGLDGRAAVSTA---RRVLDRFTHHAR 372

Query: 210 ISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRN 253
            ++  ++  T S G+ A R  +  +  ++  AD ALY AK+ G N
Sbjct: 373 AATPHNLCCTASGGVAASRLGQATVEVLLNDADLALYEAKREGDN 417


>gi|90022182|ref|YP_528009.1| hypothetical protein Sde_2537 [Saccharophagus degradans 2-40]
 gi|89951782|gb|ABD81797.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 456

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 8/164 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  L+R D L+ L+N     + L S       + +   +   DID FK IND +G+ VG
Sbjct: 289 QLRDLARTDYLTTLINRREMTNILRSVCIDYKVHPKPFVVTLMDIDDFKNINDCYGNGVG 348

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  L  +L  +  T   + R GGEE       ++  +AA+ A  LRK IE  + ++ 
Sbjct: 349 DEVLLSLCKRLSAMLDTKEVLARWGGEELLFLMNDATLTDAALRAEALRKTIEGMEFSVD 408

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   + IT S G+AE   +  +   I  A  ALY AK+ G+NRV
Sbjct: 409 NNI-VSITASFGLAEYEVERGLDATIKEAGLALYRAKRLGKNRV 451


>gi|34496598|ref|NP_900813.1| hypothetical protein CV_1143 [Chromobacterium violaceum ATCC 12472]
 gi|34102452|gb|AAQ58818.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 454

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 32/192 (16%)

Query: 93  LFISYNR----ISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDID----------- 137
           L ISY +    + Q ++ D L+ L NH  F       +E+ + +F               
Sbjct: 268 LLISYEQLLLQVRQQAQQDGLTQLYNHRTF-------HEQAAAMFARAQRAGDALALLLI 320

Query: 138 ---YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
              +FK++ND +GH  GD+V+  L+D L         +GR GGEEF      +S  EA  
Sbjct: 321 DLDHFKEVNDRYGHQAGDEVLRQLADCLRAESRQGDLLGRHGGEEFVVMLPQASRVEAGN 380

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKS 250
           +A+ LR+ I N +  +     + + ISA I   C + P    ++++   AD  LY AK+ 
Sbjct: 381 VADRLRQAIVNLEPKVG---ELRLPISASIGVACLRPPEHDSLASLFLEADLLLYQAKRK 437

Query: 251 GRNRVVCFSDIE 262
           GRNRV    + E
Sbjct: 438 GRNRVEIAREAE 449


>gi|33592585|ref|NP_880229.1| hypothetical protein BP1492 [Bordetella pertussis Tohama I]
 gi|33572231|emb|CAE41781.1| hypothetical protein BP1492 [Bordetella pertussis Tohama I]
 gi|332382002|gb|AEE66849.1| hypothetical protein BPTD_1474 [Bordetella pertussis CS]
          Length = 365

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 77/170 (45%), Gaps = 13/170 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYN-----------EKLSIVFFDIDYFKQINDNF 146
            R++ LSR D L+ ++N  AF  S  +               L     DID+FKQIND +
Sbjct: 175 ERLTHLSRTDPLTQIMNRRAFTESFQTRRLEGERRRAEVGTGLGFAVVDIDHFKQINDTY 234

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD V+AF+   +   F     V R GGEEF        E     L    R  + + 
Sbjct: 235 GHDVGDVVLAFVGKMMNEFFRESDCVARFGGEEFCVLMQDVDEGGMQRLLERFRVALGDC 294

Query: 207 QINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  S+G ++ IT S G +  +     I      AD ALY AK  GRNRV
Sbjct: 295 VVTHSAG-TVSITASIGAVLVKTSVAGIDRAFRSADLALYKAKADGRNRV 343


>gi|327483885|gb|AEA78292.1| GGDEF family protein [Vibrio cholerae LMA3894-4]
          Length = 443

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 34/172 (19%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+G +N       L             +S++F DIDYFKQ+ND +GH +GD +
Sbjct: 272 EMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDL 331

Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KII 203
           +             SD+LV          R GGEEF      ++ ++A  LA  LR KI 
Sbjct: 332 LREFALVISREIRESDKLV----------RWGGEEFVVFCAQTTLEQAIELAERLRAKIA 381

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++S I+  +     IT S GIA+    E I+  + RAD+ALY AK+ GRNR+
Sbjct: 382 DHSWIHGGA-----ITCSLGIAQ-MGDERITETVSRADEALYRAKRLGRNRI 427


>gi|311105868|ref|YP_003978721.1| sensory box protein 4 [Achromobacter xylosoxidans A8]
 gi|310760557|gb|ADP16006.1| sensory box protein 4 [Achromobacter xylosoxidans A8]
          Length = 570

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 88/165 (53%), Gaps = 9/165 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPVG 151
           + +L+  D L+ L N   F+S + +   ++        +++  D+D+FK+IND +GH +G
Sbjct: 397 LRELAATDALTTLPNRRHFMSRIAAELARIKRQGSDCAAVLMCDLDHFKRINDTWGHAIG 456

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+   ++ L         VGR+GGEEFA     +  + A   A  +++ I  +  ++ 
Sbjct: 457 DGVLQHFANTLRAQLRAVDLVGRIGGEEFAVVLPDTDIERAHAFATRVQQRIAAAPFSLG 516

Query: 212 SGPSIHITISAGIAERCHKEPISTI-IYRADQALYVAKKSGRNRV 255
               I +T+S GI+     +  + + + R+D+ALY AK+ GRNR+
Sbjct: 517 DDRHIPLTVSIGISTMHTLDADAELALSRSDRALYYAKQRGRNRI 561


>gi|257865351|ref|ZP_05645004.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257871681|ref|ZP_05651334.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257799285|gb|EEV28337.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257805845|gb|EEV34667.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
          Length = 369

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 90/170 (52%), Gaps = 12/170 (7%)

Query: 97  YNRISQL--SRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           Y  +++L  S+ID L+G  N+  +   L    S  + ++I   D+D+FK++ND +GH  G
Sbjct: 195 YQVLAELANSKIDALTGCFNYGTYNHDLLQAVSQKKTVTIAMIDLDHFKKVNDRYGHIAG 254

Query: 152 DKVIAFLSDQLVVV----FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           ++++   + +        F       R GGEEF     G  +++       L + I +S 
Sbjct: 255 NELLRTFATRTTTFLEAHFAETFSFYRYGGEEFCVVIEGDVKEKTVAAMTTLCQTISSSM 314

Query: 208 INISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +++     +++S G+  +  CH + ++ +  RADQALY+AK+SGRNRV
Sbjct: 315 FPVANFEKGTMSLSCGVEASTVCHGDILAAV-ERADQALYLAKQSGRNRV 363


>gi|255318986|ref|ZP_05360211.1| diguanylate cyclase [Acinetobacter radioresistens SK82]
 gi|262378277|ref|ZP_06071434.1| signaling protein [Acinetobacter radioresistens SH164]
 gi|255304003|gb|EET83195.1| diguanylate cyclase [Acinetobacter radioresistens SK82]
 gi|262299562|gb|EEY87474.1| signaling protein [Acinetobacter radioresistens SH164]
          Length = 527

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 8/153 (5%)

Query: 107 DCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ L N      F+  +   +   SI+  DID FK++ND +GH +GD+V+  L+  + 
Sbjct: 376 DALTQLFNRRGMEIFVKEMIDSDIHFSILLIDIDRFKRVNDTYGHDIGDEVLKILAKLIQ 435

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
             F       R GGEEF      +++QE    A   R+I+E  +IN + G    ITIS G
Sbjct: 436 ENFRKEDLCCRYGGEEFIVVIPNNNKQEIYESAERFRRIVEAFEIN-NVG---RITISIG 491

Query: 224 IAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
           IA      E  + ++  AD  LY AK +GRN++
Sbjct: 492 IASWPDSAEEFAQVLKIADNNLYYAKNNGRNQI 524


>gi|229490389|ref|ZP_04384230.1| diguanylate cyclase [Rhodococcus erythropolis SK121]
 gi|229322679|gb|EEN88459.1| diguanylate cyclase [Rhodococcus erythropolis SK121]
          Length = 471

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 96/210 (45%), Gaps = 21/210 (10%)

Query: 67  ENLSLVIISITISLLLGYIS----GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           E +S V  S+ I L L  ++      ++ E   +   ++Q    D L+G L    F+   
Sbjct: 263 EGVSPVSASVQIGLSLLAVAPIAVACVILERRRALEALTQAVTHDDLTGALRRDEFLRRG 322

Query: 123 GSYN----------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           GS              +S++  D+D+FK +NDN GH  GD  +   +DQ+          
Sbjct: 323 GSVTGATDPRRHSGRPVSVLMMDLDHFKMVNDNLGHRAGDTALVSFADQVRRHLDDKHLF 382

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKI-IENSQINISS-GPSIHITISAGIAERCHK 230
            RLGGEEF     G   + A   A  +R+   ENS   +   GP    T+S G+A   H 
Sbjct: 383 ARLGGEEFVVLMAGVDLEGATETAEMIRRAQAENSSAVLGDFGP----TVSIGVACSPHG 438

Query: 231 EP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  ++ ++  AD+ALY AKK  RNR V  +
Sbjct: 439 DADLTQLVDCADEALYRAKKLDRNRTVALT 468


>gi|254226710|ref|ZP_04920287.1| GGDEF family protein [Vibrio cholerae V51]
 gi|125620771|gb|EAZ49128.1| GGDEF family protein [Vibrio cholerae V51]
          Length = 443

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 34/172 (19%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+G +N       L             +S++F DIDYFKQ+ND +GH +GD +
Sbjct: 272 EMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDL 331

Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KII 203
           +             SD+LV          R GGEEF      ++ ++A  LA  LR KI 
Sbjct: 332 LREFALVISREIRESDKLV----------RWGGEEFVVFCAQTTLEQAIELAERLRAKIA 381

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++S I+  +     IT S GIA+    E I+  + RAD+ALY AK+ GRNR+
Sbjct: 382 DHSWIHGGA-----ITCSIGIAQ-MGDERITETVSRADEALYRAKRLGRNRI 427


>gi|301346545|ref|ZP_07227286.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii
           AB056]
          Length = 631

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 12/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +   ++ LS  D L+ L N           +S     ++K++ ++ D+D FK +ND
Sbjct: 246 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSDHRYKDQKIAFLYIDLDRFKSVND 305

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH +GD+++  ++++L         + R+GG+EF   A  +  +EA  LA  +  +I+
Sbjct: 306 AFGHHIGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLIAENTDTEEAMQLAEKVLHLIQ 365

Query: 205 NS-QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +S QI   SG  I+I+ S GIA    H + +  ++  AD A+ ++K+ GRN    FS
Sbjct: 366 DSYQI---SGKEINISASLGIALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTVFS 419


>gi|39996743|ref|NP_952694.1| GGDEF/response regulator receiver domain-containing protein
           [Geobacter sulfurreducens PCA]
 gi|39983624|gb|AAR35017.1| GGDEF/response regulator receiver domain protein [Geobacter
           sulfurreducens PCA]
 gi|307634892|gb|ADI84478.2| response receiver-modulated diguanylate cyclase [Geobacter
           sulfurreducens KN400]
          Length = 316

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 87/174 (50%), Gaps = 15/174 (8%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148
           S   +  L+  D L+G+ N       L         Y   +S+V FDID+FK++ND +GH
Sbjct: 139 SMEEVRLLTMRDPLTGIYNRRYLEDRLHQEVKRTFRYERPISVVMFDIDHFKRVNDTWGH 198

Query: 149 PVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
            VGD+V+   ++ +   V     +  R GGEEF      +    A I+A  LR+ I   Q
Sbjct: 199 LVGDQVLKACAESVRSGVRENIDWPVRYGGEEFVVVLPETDMAGAVIVAERLRQRIALIQ 258

Query: 208 INISSGPSIHITISAGIA---ERCHKEPIS---TIIYRADQALYVAKKSGRNRV 255
            ++  G ++ +T S G+A       KE +S    ++ RAD+ LY AK  GRNRV
Sbjct: 259 TSVGDG-AVTVTASFGVASFTPPDQKEDLSIGEVLLERADRCLYRAKGEGRNRV 311


>gi|304410052|ref|ZP_07391671.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|307302235|ref|ZP_07581993.1| diguanylate cyclase [Shewanella baltica BA175]
 gi|304351461|gb|EFM15860.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|306914273|gb|EFN44694.1| diguanylate cyclase [Shewanella baltica BA175]
          Length = 584

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 94/196 (47%), Gaps = 18/196 (9%)

Query: 74  ISITISLLLGYISGSILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGS-------Y 125
           + +T +L L  +  S+  E   SY  ++  ++  D L+G  N       L         +
Sbjct: 382 MPVTDNLELQQMVNSL--ETLKSYAAQVKGMAETDGLTGCYNRRYLDIQLQKELEYARDH 439

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAA 184
           N  L I+ FDID FKQ ND +GH  GD+ +  + +    +   P   + R GGEEF    
Sbjct: 440 NMPLGIILFDIDNFKQFNDRYGHVAGDQCLKNIVNAAKSILKRPTDMLARYGGEEFMIVL 499

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIAERCHKEP----ISTIIYR 239
             S  +E    A  LR+ I + +I     P   I TISAGI   C + P     +++I R
Sbjct: 500 PSSHLEEVYQFAELLREKIISLEIPHEDSPHAGILTISAGIT--CWQLPQQLDANSLINR 557

Query: 240 ADQALYVAKKSGRNRV 255
           AD+ALY AK +GRNR 
Sbjct: 558 ADEALYHAKLTGRNRT 573


>gi|317048285|ref|YP_004115933.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pantoea sp. At-9b]
 gi|316949902|gb|ADU69377.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pantoea sp. At-9b]
          Length = 661

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      +   +  +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRVLANTDTVTGLPNRNAIHQQISLALETAKGAQTGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           ++ND +GH  GD+++  +S  ++   G    + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KVNDAYGHMFGDQLLQAVSLAILSCLGKDQTLARLGGDEFVVLAENTSQAALEAMASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + SG S+ I ++       H E   ++I  AD A+Y AK++GR +  
Sbjct: 339 ERLRQPFRIGLIEVYSGCSLGIALAP-----LHGEDRESLIRNADTAMYHAKENGRGKFC 393

Query: 257 CFS 259
            F+
Sbjct: 394 VFA 396


>gi|170702307|ref|ZP_02893204.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           IOP40-10]
 gi|170132790|gb|EDT01221.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           IOP40-10]
          Length = 516

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 11/163 (6%)

Query: 100 ISQLSRIDCLSGLLN----HSAFISSLG----SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           I  L+R D L+GL N    H+     L     + +  L++++ D+D FK IND FGH  G
Sbjct: 338 IRHLARHDALTGLPNRHELHAELRRRLAHRPRAPSPALAVMYLDLDGFKAINDRFGHQAG 397

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++++L           R+GG+EF  A   ++ Q  +ILA  + + I ++   +S
Sbjct: 398 DEVLTQVAERLGKTLPPGELAARIGGDEFIVAIDDTTMQACSILAARIIRQI-SAPYTLS 456

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
            G ++ + IS GIA +  H  P   +I +AD ALY AK  G+ 
Sbjct: 457 IGATVSLGISIGIALDDGHGSP-DELIRQADSALYDAKSGGKG 498


>gi|187926918|ref|YP_001893263.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12J]
 gi|241665247|ref|YP_002983606.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12D]
 gi|187728672|gb|ACD29836.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12J]
 gi|240867274|gb|ACS64934.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12D]
          Length = 652

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 23/184 (12%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNE-KLSIVFFDIDYFKQINDNFGH 148
           +  RI  L+  D L+GLLN SA         +LG  N  ++S++F D+D FK +ND  GH
Sbjct: 208 AQQRIRHLATHDTLTGLLNRSALEDRLEHALALGRRNRSRVSVMFLDLDRFKNVNDTLGH 267

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--S 206
             GD ++  ++ +L         V RLGG+EF            ++ A   R++ E   S
Sbjct: 268 QFGDMLLREVAARLQACAREADTVARLGGDEFVVML-------ESLDAMGTRRVAERILS 320

Query: 207 QINIS---SGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF-SD 260
            I       G  +++ +S GI  A R   +P  T++ +AD A+Y+AK+ GRN    F SD
Sbjct: 321 AIGAPFHIEGQELYLGVSIGIAVAPRDGDDP-HTLLRKADAAMYLAKERGRNNFQTFTSD 379

Query: 261 IENN 264
           +++ 
Sbjct: 380 LDDR 383


>gi|104780809|ref|YP_607307.1| sensory box protein [Pseudomonas entomophila L48]
 gi|95109796|emb|CAK14501.1| putative sensory box/GGDEF domain/EAL domain protein [Pseudomonas
           entomophila L48]
          Length = 1124

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 69/211 (32%), Positives = 105/211 (49%), Gaps = 21/211 (9%)

Query: 64  ILVENLSLVIISI--TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF--- 118
           IL   +S+  IS+  T  LLL     S+LK    +  +I  L+  D L+ L N +     
Sbjct: 648 ILTVEVSVEPISLNETDCLLLTARDVSLLKN---AQAQIRHLAYHDPLTNLPNRALLMDR 704

Query: 119 ----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
               I+ L  +N + +++F D+D+FK IND+ GHPVGD V+  ++ +L         V R
Sbjct: 705 LSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVAR 764

Query: 175 LGGEEFAAAALGSS------EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-R 227
           LGG+EF     G        E +   LA+ LR+++  ++     G  + +T S G+A   
Sbjct: 765 LGGDEFVVLLSGLEGSRELVESKVRELADTLRELL--AEPMSLDGQRLQVTPSIGVALIP 822

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            H    + ++ RAD ALY AK SGRN    F
Sbjct: 823 DHGATPADLLKRADIALYRAKDSGRNTTQLF 853


>gi|71907676|ref|YP_285263.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71847297|gb|AAZ46793.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 827

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 60/198 (30%), Positives = 107/198 (54%), Gaps = 19/198 (9%)

Query: 83  GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           G ++G+++    +S +R     ++ L++ D L+GL N +     L         +N+++ 
Sbjct: 368 GQVAGAVIVFHDVSESRAMALKMAHLAQHDFLTGLPNRALLTERLSRAIGQARRHNKRVG 427

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F D+DYFK IND+ GH VGD+++  ++++L+V       V R GG+EF    L   EQ
Sbjct: 428 MLFLDLDYFKHINDSLGHAVGDQLLQQVAERLIVCIRDTDTVCRQGGDEF-VILLAEIEQ 486

Query: 191 --EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247
             +AA +A  L  +   ++  + +G  +H+++S GI+          T++  AD A+Y A
Sbjct: 487 ARDAAPIAEKL--LAAFAEPCLIAGNELHVSLSIGISIYPDDGMDADTVMKNADTAMYHA 544

Query: 248 KKSGRNRVVCFSDIENNT 265
           K +GRN    F+  E NT
Sbjct: 545 KANGRNNYQFFT-TEMNT 561


>gi|83309828|ref|YP_420092.1| signal transduction protein [Magnetospirillum magneticum AMB-1]
 gi|82944669|dbj|BAE49533.1| Predicted signal transduction protein [Magnetospirillum magneticum
           AMB-1]
          Length = 679

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 19/182 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +R+  LS  D L+ L N   F       I     +     +   D+D FK IND FGHP+
Sbjct: 260 HRLEDLSIRDPLTRLYNRRKFDEFLDHEIDRAQRHGHPFCVAQIDLDDFKNINDTFGHPI 319

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  L+  L         V R+G +EFA     ++ +E    A  LR+ + + Q+ +
Sbjct: 320 GDLVLKELASVLYREVRRTDVVARVGADEFAVLLPETTMEEGVAAAEKLRQAVADCQLGL 379

Query: 211 SSGPSIHITISAGI------AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             G  + IT S G+      A+   K  I+     AD A+Y AK+SG+N+V    + E+ 
Sbjct: 380 PVG-GVRITASIGLVGYPDNADDAQKLAIA-----ADVAIYKAKRSGKNQVAVIGEGEDA 433

Query: 265 TC 266
           T 
Sbjct: 434 TV 435


>gi|28898029|ref|NP_797634.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|260878377|ref|ZP_05890732.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|260899030|ref|ZP_05907471.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|28806243|dbj|BAC59518.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088646|gb|EFO38341.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|308091088|gb|EFO40783.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
          Length = 445

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 90/169 (53%), Gaps = 26/169 (15%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDK 153
           ++L+  D L+G +N  A  + L     +       LSI++ D+D FK+IND FGH +GD 
Sbjct: 275 AELAHRDALTGAMNRHAVQTWLEQQARQVRWGHSTLSILYMDLDNFKKINDKFGHQMGDD 334

Query: 154 VIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           ++     + V+V  + +       R GGEEF      ++ ++A   A  +RK       N
Sbjct: 335 ILR----EFVMVVASSIAPDDRLVRWGGEEFVVFCPDTNIEQAVKKAEMIRK-------N 383

Query: 210 ISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +++   +H   +T S G+A+    E ++  + RAD+ LY+AK++GRNRV
Sbjct: 384 VANHLWVHGEALTCSIGVAQ-MQNERVTETMARADEVLYLAKRNGRNRV 431


>gi|85709010|ref|ZP_01040076.1| hypothetical protein NAP1_07205 [Erythrobacter sp. NAP1]
 gi|85690544|gb|EAQ30547.1| hypothetical protein NAP1_07205 [Erythrobacter sp. NAP1]
          Length = 631

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 95/171 (55%), Gaps = 12/171 (7%)

Query: 98  NRISQLSRIDCLSGL-----LNHSAFISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVG 151
           +++  L+R D ++GL     LNH+   + +G  ++ +L++++ D+D FK++ND  GHPVG
Sbjct: 196 DKMQVLARTDVVTGLANRAGLNHAMVETMMGVNDDSRLALIWVDLDRFKEVNDLLGHPVG 255

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINI 210
           D+V+  ++ +L  V      V R GG+EF       S Q+A  LA+++  +I+   +I+ 
Sbjct: 256 DRVLTGVAKRLKEVSPEGSTVARFGGDEFIIFCPIVSRQDAERLASEIHAEIMRPFRID- 314

Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             G  + +  S G++          T++  AD ALY AK  GR+R  CF D
Sbjct: 315 --GERLEVRASLGVSLLPENGNDADTLMQSADLALYHAKVGGRSR-TCFYD 362


>gi|324117112|gb|EGC11020.1| GGDEF domain-containing protein [Escherichia coli E1167]
          Length = 476

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 309 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 368

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +         + R+GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 369 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 428

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 429 SIGAVVTQENTLNPNEIYRLADNALYEAKETGRNKVV 465


>gi|323938128|gb|EGB34390.1| GGDEF domain-containing protein [Escherichia coli E1520]
          Length = 473

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 309 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 368

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +         + R+GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 369 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 428

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 429 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 465


>gi|291618989|ref|YP_003521731.1| YciR [Pantoea ananatis LMG 20103]
 gi|291154019|gb|ADD78603.1| YciR [Pantoea ananatis LMG 20103]
          Length = 770

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 10/179 (5%)

Query: 87  GSILKELFISYN---RISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFK 140
           G I++++ + Y    R+ +L+ +D L+ L + SAF++ L    E     +++  D+D FK
Sbjct: 287 GMIIRDVTLRYESEARLCELASLDMLTRLASRSAFMTQLSKLTESGVPYTLLMTDLDSFK 346

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND  GH  GD ++  +++Q+  V    +   RLGG+EF    L     EA  +A  L 
Sbjct: 347 DVNDTRGHAAGDALLCHVAEQIRAVCTQAIAAARLGGDEF-IVLLPCGSDEAMKIAQQLT 405

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             I+     + S  +I +  S G+A    H    S+++  AD ALY AK SG+ + V F
Sbjct: 406 AAIQTPFHYMDS--TIAVGASTGVASFPHHATDTSSVMSAADLALYRAKASGKGQSVLF 462


>gi|304315899|ref|YP_003851044.1| diguanylate cyclase with GAF sensor [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777401|gb|ADL67960.1| diguanylate cyclase with GAF sensor [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 554

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 73/133 (54%), Gaps = 3/133 (2%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +S++  D+D FK IND +GH +GD V+  ++ ++         V R GGEEF+      +
Sbjct: 422 VSLIMLDVDKFKNINDTYGHVIGDIVLCEIASRIKSCVRNNDIVARYGGEEFSVILPNLT 481

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247
            ++A ++A  +R  + +  I    G  I IT+SAG+A+  +K E    +I  AD+ALY  
Sbjct: 482 AEQACVIAERIRYEVSSKPIKTDVG-DITITVSAGVADYPNKAESAEKLISHADRALYAG 540

Query: 248 -KKSGRNRVVCFS 259
            K  GR+RV  + 
Sbjct: 541 CKTKGRDRVAVYE 553


>gi|170760605|ref|YP_001785694.1| putative diguanylate cyclase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407594|gb|ACA56005.1| putative diguanylate cyclase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 862

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 103/210 (49%), Gaps = 16/210 (7%)

Query: 61  LEYILVENLSLVIISITISLLLGYISG--SILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           LE I +E L     ++  S+ + Y +   + + E      +I  L+  D L+GL N    
Sbjct: 397 LEEIYIEELRKWFSAVVYSMEVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKI 456

Query: 119 ISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           I ++        NE+ +++F D+D+FK IND  GH VGD V+  +S +  ++      +G
Sbjct: 457 IETINKTISNYENERFAVLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKHKIG 516

Query: 174 RLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
           RLGG+EF       ++  +E+ A  +   L   I+  + ++  G SI I+I     +   
Sbjct: 517 RLGGDEFIIVQNITSISDAEKLACKICTTLNHSIKYKKDDLFIGASIGISIYPEDGKDT- 575

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               ST++  AD A+Y AKK+G  +   +S
Sbjct: 576 ----STLMKNADAAMYAAKKNGGYKYEVYS 601


>gi|148976879|ref|ZP_01813534.1| hypothetical protein VSWAT3_10511 [Vibrionales bacterium SWAT-3]
 gi|145963753|gb|EDK29013.1| hypothetical protein VSWAT3_10511 [Vibrionales bacterium SWAT-3]
          Length = 469

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 17/172 (9%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKV 154
           +NR++ L+  D L+GLLN   F + L + +E+  + +  FDID FK +ND++GH +GD+V
Sbjct: 297 HNRLNDLAMQDPLTGLLNRRGFEAQLLAQDEEPIIGVGVFDIDDFKVVNDHYGHKIGDEV 356

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           I  ++  +         V R GGEEF  A  G S +  + +   ++  I        +G 
Sbjct: 357 ICHVAQLMTNSVRQQDIVARFGGEEFVVAITGESSELLSSIFERIQNDISLQCYRTPTGD 416

Query: 215 SIHITISAG-----------IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++I++S G           +      + I +    +D+ LY AK +G+N+V
Sbjct: 417 KVNISVSGGATLYSLYKFDSVGHLWENQSIRS----SDEQLYKAKAAGKNQV 464


>gi|146306389|ref|YP_001186854.1| diguanylate cyclase [Pseudomonas mendocina ymp]
 gi|145574590|gb|ABP84122.1| diguanylate cyclase [Pseudomonas mendocina ymp]
          Length = 508

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 8/165 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            RI+ L+  D L+ L N   F       +      +  L  V  D+D FK +ND  GH  
Sbjct: 341 RRIAALATTDSLTELPNRRGFDILAAQALQEAQRDSSPLCAVLLDLDNFKALNDAHGHLA 400

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+   + QL         + R GGEEF      +    A  LA  LR+     +  +
Sbjct: 401 GDDVLRRFARQLRGSLRQADILCRWGGEEFILLLKNTDRNAAHELAEKLRQQCAEQRYPV 460

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + G ++ +T+S G+++    E +  ++ R D+ALY AK++GR+RV
Sbjct: 461 A-GKALQVTVSLGLSQWQEGETLHDLLGRTDRALYRAKQAGRDRV 504


>gi|327398451|ref|YP_004339320.1| diguanylate cyclase [Hippea maritima DSM 10411]
 gi|327181080|gb|AEA33261.1| diguanylate cyclase [Hippea maritima DSM 10411]
          Length = 174

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 14/171 (8%)

Query: 98  NRISQLSR---IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           N+I QL      D L+GL N                 Y+  LS++  DID+FK IND +G
Sbjct: 5   NKIIQLHEEAVRDPLTGLFNRRYMNLLAEIEFKKTKRYSHPLSVLMIDIDHFKNINDKYG 64

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD V+  ++ ++     +     R GGEEF      ++++ A ILA  +R  I  + 
Sbjct: 65  HKLGDLVLKHVAHEIKNHIRSSDIPIRYGGEEFVIILPNTTKESAFILAERIRNHIAATP 124

Query: 208 INISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           I +  G  I  T+S G +  E C  E    ++  +D+ +Y+AK+SGRNR +
Sbjct: 125 IFV-DGMEIRCTVSIGASSMEDC-PETFEELVNNSDKKMYLAKQSGRNRTI 173


>gi|304397592|ref|ZP_07379469.1| diguanylate cyclase/phosphodiesterase [Pantoea sp. aB]
 gi|304354764|gb|EFM19134.1| diguanylate cyclase/phosphodiesterase [Pantoea sp. aB]
          Length = 518

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 119/241 (49%), Gaps = 25/241 (10%)

Query: 39  IATVIFIANIFLF--------YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
           IAT+I ++ ++ F         +GL   Y   + + E L  ++ S + ++L   +   ++
Sbjct: 13  IATIILLSTLWEFGLEARICRLLGLG--YDTSFEISERLRFILTSSSFAVLAMVVPALLI 70

Query: 91  KELFISYNRISQ----LSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIN 143
             L     R  +    L+  D L+G++N  +F   I+SL +     ++   ++++FK IN
Sbjct: 71  AGLIRKTRRAEKNALRLAGTDELTGVMNRRSFNAHIASLKACGAAYTLTLLNVNHFKSIN 130

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD  +  L+D L    G+   V R+GG+EFA  A  S  ++A   A  L +  
Sbjct: 131 DLNGHRQGDATLIALADLLTASAGSTSKVFRVGGDEFAIVAEDSQAEQAQTFAESLCE-- 188

Query: 204 ENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFS-DI 261
                +I +GP   +++SAGIA   C  +  + ++  AD ALY AK+   + +  FS D+
Sbjct: 189 --QAASIRTGPHTFLSLSAGIASSACTGQ--ADVMRAADLALYEAKQDKCSHLARFSPDM 244

Query: 262 E 262
           E
Sbjct: 245 E 245


>gi|323528088|ref|YP_004230240.1| PAS/PAC sensor-containing diguanylate cyclase [Burkholderia sp.
           CCGE1001]
 gi|323385090|gb|ADX57180.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1001]
          Length = 522

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 9/166 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQINDNFG 147
           S  ++  L+R D L+GL N       L     K         ++++ D+D FKQ ND  G
Sbjct: 334 SEAKVLYLARHDSLTGLANRRELRERLERILLKAHAVSGMRTAVLYLDLDGFKQANDRHG 393

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+V+  ++ +L        F  RLGG+EFA     ++      +A  + + I    
Sbjct: 394 HTAGDEVLETVAARLRQTLRHGEFAARLGGDEFAVIVEQATLHSIVAMAQHVIREIAKPY 453

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           + +++G SI I  S GIA     EP+  +I RAD+A+Y AK +G+ 
Sbjct: 454 V-LATGGSISIGTSIGIALAEAHEPVDDLIRRADEAMYSAKNAGKG 498


>gi|256023272|ref|ZP_05437137.1| putative diguanylate cyclase [Escherichia sp. 4_1_40B]
          Length = 452

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +         + R+GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 404

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 405 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 441


>gi|332143206|ref|YP_004428944.1| diguanylate cyclase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327553228|gb|AEA99946.1| diguanylate cyclase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 142

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 1/141 (0%)

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           ++ L   + K ++   DID FK IND +GH VGD  +   +      F   + +GRLGGE
Sbjct: 1   MNELPHKSNKCAVAMLDIDLFKTINDKYGHCVGDDALKLFAATAKQNFSASVDMGRLGGE 60

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EF     G    E         + ++++ I  + G  I +T SAG+      + IS+++ 
Sbjct: 61  EFLFIFQGVDVSETVKQLETFSQSLKDASIK-ALGGEIKLTFSAGVLLLTEAQSISSVLE 119

Query: 239 RADQALYVAKKSGRNRVVCFS 259
           + D ALY AK++GR+++V F+
Sbjct: 120 KTDGALYEAKETGRDKIVVFT 140


>gi|152999355|ref|YP_001365036.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|151363973|gb|ABS06973.1| diguanylate cyclase [Shewanella baltica OS185]
          Length = 507

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 86/176 (48%), Gaps = 13/176 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYF 139
           ++ K+L  S   +  LS  D L+ L N   F + L   NE+        + +V  DIDYF
Sbjct: 333 TLRKQLEASNAELEFLSTHDPLTKLYNRHYF-NRLFINNEQHDKSAKAGMCLVMIDIDYF 391

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND  GH VGD+++  +S  L         V R GGEEF      SS      L   +
Sbjct: 392 KEINDTLGHNVGDRILEQVSQVLQHCVRESDVVARWGGEEFVILCQHSSLPLVESLCVRI 451

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + I++ Q       ++ +T S G+A+    EP+     RAD+ALY AK  GRN++
Sbjct: 452 AERIKHYQFT----DNVQLTCSFGVAKLADNEPMMLCFERADRALYRAKAQGRNQM 503


>gi|84515732|ref|ZP_01003093.1| GGDEF domain protein [Loktanella vestfoldensis SKA53]
 gi|84510174|gb|EAQ06630.1| GGDEF domain protein [Loktanella vestfoldensis SKA53]
          Length = 249

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 80/163 (49%), Gaps = 9/163 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF--ISSLGSYNEKLSIVF-FDIDYFKQINDNFGHPVGDKV 154
            R+S +SR D L+G+ N   F  ++S  S   K  I+   D D+FKQIND +GH  GD  
Sbjct: 77  RRLSFMSRKDWLTGMNNRRTFFDLASTRSQQCKTGILLMLDADHFKQINDTYGHQAGDIC 136

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +S  L          GR+GGEEFA     +    A +++    K      I    GP
Sbjct: 137 LKAISYMLSRNLRVGDVSGRIGGEEFAILLADAKPDHARVISERPTK-----PIPFRVGP 191

Query: 215 S-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + + IT+S G      + P+   +  AD+ALY AK  GR RVV
Sbjct: 192 AHLTITLSIGAVITSPETPLEVSLSLADKALYQAKSEGRARVV 234


>gi|120556162|ref|YP_960513.1| diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8]
 gi|120326011|gb|ABM20326.1| diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8]
          Length = 774

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 94/196 (47%), Gaps = 27/196 (13%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLS-IVFFDIDYFK 140
            +++ L   + R S+ + ID LSGL N   F+    S         KLS ++F D+D FK
Sbjct: 328 QLIERLETEHARSSRAASIDHLSGLFNRRQFLDVADSLVLEQRRQRKLSTMLFIDLDRFK 387

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-----EQEAAIL 195
            IND+ GH +GD ++  ++ ++  + G      R GG+EF     G       EQ AA L
Sbjct: 388 SINDSLGHHIGDLLLQAVAGRIQRMLGKGDIAARFGGDEFVVLLAGDRSEADIEQWAAAL 447

Query: 196 ANDLRK--IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
              L    ++E +++N S  PSI I IS         + I  +   AD A+Y AKK+GR 
Sbjct: 448 TAHLSAPYMLEGTELNTS--PSIGIAISP-----RDGQSIDELTKCADAAMYSAKKAGRG 500

Query: 254 RVVCF------SDIEN 263
           +   F      SD+E 
Sbjct: 501 QYRFFDQSLNVSDVEE 516


>gi|15641229|ref|NP_230861.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121730346|ref|ZP_01682706.1| GGDEF family protein [Vibrio cholerae V52]
 gi|147674755|ref|YP_001216786.1| GGDEF family protein [Vibrio cholerae O395]
 gi|153801903|ref|ZP_01956489.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|229505191|ref|ZP_04394701.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229511139|ref|ZP_04400618.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229518258|ref|ZP_04407702.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229529695|ref|ZP_04419085.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229608210|ref|YP_002878858.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254848341|ref|ZP_05237691.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255745620|ref|ZP_05419568.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262159105|ref|ZP_06030217.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|262169463|ref|ZP_06037155.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|298498684|ref|ZP_07008491.1| GGDEF family protein [Vibrio cholerae MAK 757]
 gi|9655696|gb|AAF94375.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121627904|gb|EAX60483.1| GGDEF family protein [Vibrio cholerae V52]
 gi|124122548|gb|EAY41291.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|146316638|gb|ABQ21177.1| GGDEF family protein [Vibrio cholerae O395]
 gi|227013133|gb|ACP09343.1| GGDEF family protein [Vibrio cholerae O395]
 gi|229333469|gb|EEN98955.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229344973|gb|EEO09947.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229351104|gb|EEO16045.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229357414|gb|EEO22331.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229370865|gb|ACQ61288.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254844046|gb|EET22460.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255736695|gb|EET92092.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262022276|gb|EEY40985.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|262029290|gb|EEY47942.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|297543017|gb|EFH79067.1| GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 372

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 16/180 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L+    ++  LS  D L+GL N    +  L           +    V  DID FK +N
Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH VGDKV+  +++ L   F +   V RLGG+EF      ++      +A  + + I
Sbjct: 253 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETNTAGGVYIAEQVCRAI 312

Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   I++ +      ++S G+A      + H E    ++  ADQA+Y+AK SG+NRV  F
Sbjct: 313 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHE----LLRAADQAVYLAKNSGKNRVCAF 368


>gi|323499464|ref|ZP_08104435.1| GGDEF domain-containing protein [Vibrio sinaloensis DSM 21326]
 gi|323315451|gb|EGA68491.1| GGDEF domain-containing protein [Vibrio sinaloensis DSM 21326]
          Length = 323

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 104/214 (48%), Gaps = 26/214 (12%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELF-----ISYNRISQLSRIDCLSGLLNHSAF 118
           + +EN +LV  ++ ++ +L Y+    +  ++        + ++ L+  D L+G  N  + 
Sbjct: 116 VAIENSALVRSAVYLNFVLAYVFVWTISHVYEDSRVKGVDSLNTLAHQDALTGAQNRLSL 175

Query: 119 ISSLGSYNEKLSIVFF---DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
           +++     E L   F    DID FK IND++GH  GD V+  + ++L  V G    + R+
Sbjct: 176 VTTFEQRAELLEGCFLLTLDIDDFKSINDSYGHAAGDVVLKQVVERLATVAG-QQHIYRM 234

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------SIHITISAGIAERCH 229
           GGEEF      +S Q+  I      + ++  Q ++   P       + +T SAG+ +   
Sbjct: 235 GGEEFVIVLPNTSSQQTGI-----SRWVKQLQASVMGKPMCFQGSELEVTFSAGVEQFSQ 289

Query: 230 KEPISTIIYRADQALYVAKKSGRN------RVVC 257
            + +   +  AD+ LY+AKKSG+       +V+C
Sbjct: 290 AKGLDKTLSLADKDLYLAKKSGKRSTFYQGKVLC 323


>gi|182680837|ref|YP_001828997.1| diguanylate cyclase [Xylella fastidiosa M23]
 gi|182630947|gb|ACB91723.1| periplasmic/7TM domain sensor diguanylate cyclase [Xylella
           fastidiosa M23]
 gi|307579304|gb|ADN63273.1| diguanylate cyclase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 554

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 20/163 (12%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+G L   A        I         LS+ F DID+FK+IND +GH  GD  +  +
Sbjct: 395 VDGLTGALTRVAIERRLERDIDDARQMGTPLSVAFIDIDHFKRINDEYGHAAGDACLRQV 454

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP---- 214
             ++         +GR GG+E  A   G+    A       R++ E  ++ +SS P    
Sbjct: 455 VQRVRGWLRASDALGRHGGDELIAILPGADLVAA-------RRVAEGIRVAVSSQPFQFE 507

Query: 215 --SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              +  T+S G+A     E I  ++ RAD  LY +K +GR+RV
Sbjct: 508 CTRLRCTLSLGVASWLPDESIEALLQRADNGLYASKAAGRDRV 550


>gi|160874516|ref|YP_001553832.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160860038|gb|ABX48572.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|315266755|gb|ADT93608.1| diguanylate cyclase [Shewanella baltica OS678]
          Length = 518

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 78/163 (47%), Gaps = 8/163 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +L+ +D L+ L N +A    +         +   L +   DID+FK IND+FGH  GDK
Sbjct: 354 QKLNLLDSLTQLPNRAALEERMDLEYRNYQRHKSPLWVAVADIDHFKTINDSFGHSTGDK 413

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  ++  L        FV R GGEEF       +  + A L N +R+ ++N      + 
Sbjct: 414 TLQVIAMALKNSLRDTEFVARYGGEEFVLLLPDVAPADIAQLLNRVREKVKNIPFKFKNQ 473

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I +T+S G A+    E I     RAD ALY AK   R+RVV
Sbjct: 474 -RITVTVSIGAAQVMGSELIHETFERADAALYKAKHESRDRVV 515


>gi|77458524|ref|YP_348029.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1]
 gi|77382527|gb|ABA74040.1| putative GGDEF domain protein [Pseudomonas fluorescens Pf0-1]
          Length = 533

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 11/178 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           ++ +E+  ++  +  ++  D L+GL N     ++L             LS++  D+DYFK
Sbjct: 335 AMEREIRSAHKTMRDMALTDSLTGLGNRRRLDAALADEIRLARRQGSPLSLIMLDVDYFK 394

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDL 199
           + ND +GH  GD  +  + D +      P  +  R GGEEF      +    A  +A D+
Sbjct: 395 RYNDQYGHAAGDDCLIAVGDGIRKAVKRPSDLAVRYGGEEFTVLLPNTDSAGAIQVAEDI 454

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNR 254
            + I + ++  +  P  ++T SAGI  R   +     +T++  AD  LY AK+ GRNR
Sbjct: 455 LQTIRSLELEHAGHPLGYVTASAGITTRYPVDDAVTPATLLKAADTCLYQAKQQGRNR 512


>gi|70733694|ref|YP_257334.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens
           Pf-5]
 gi|68347993|gb|AAY95599.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           fluorescens Pf-5]
          Length = 330

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 2/129 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+ +  DID FK IND +GHP GD V+  +++            GR+GGEEFAA   G +
Sbjct: 201 LAFLLLDIDDFKVINDTYGHPEGDIVLQRIAESGRAALRRGDLFGRIGGEEFAAVFPGCT 260

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247
              A  +A  L++ I+    +   G +  IT+S G+       E +  +  RAD A+Y A
Sbjct: 261 ADMARQVAERLQREIQRQNFS-HQGQTFTITVSQGLTGLLAEDESLDNLFARADSAMYEA 319

Query: 248 KKSGRNRVV 256
           K+ G+NR++
Sbjct: 320 KRQGKNRII 328


>gi|16128989|ref|NP_415544.1| diguanylate cyclase [Escherichia coli str. K-12 substr. MG1655]
 gi|238900284|ref|YP_002926080.1| putative diguanylate cyclase [Escherichia coli BW2952]
 gi|301646744|ref|ZP_07246602.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|2495590|sp|P75908|YCDT_ECOLI RecName: Full=Probable diguanylate cyclase YcdT; Short=DGC
 gi|1787262|gb|AAC74110.1| diguanylate cyclase [Escherichia coli str. K-12 substr. MG1655]
 gi|238862238|gb|ACR64236.1| predicted diguanylate cyclase [Escherichia coli BW2952]
 gi|260449831|gb|ACX40253.1| diguanylate cyclase [Escherichia coli DH1]
 gi|301075070|gb|EFK89876.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
          Length = 452

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +         + R+GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 404

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 405 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 441


>gi|152964339|ref|YP_001360123.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151358856|gb|ABS01859.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 600

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 33/252 (13%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYI--GLTPFYGLEYILVENLSLVIISITIS---L 80
           TFM+   +  S   A  + +A +F F     L  F   E +L   L L +++ +++   +
Sbjct: 88  TFMLGAGVVLSADDAAALGVAGVFAFCAVDNLYFFARREAVLHTALLLAVVAGSLAWRGI 147

Query: 81  LLGYISGSILKE--LFISYNRISQLS---RIDCLSGLLNHSAF-------ISSLGSYNEK 128
             G ++  +L +  L +   R+ Q +     D L+ LLN   F       +++       
Sbjct: 148 DPGVVAALMLVQVALVVVIGRLVQRAAHGTRDSLTELLNRRGFDERFEEAVAAAHRGGSD 207

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG----TPMFVGRLGGEEFAAAA 184
           LS+   D+D+FK +ND+ GH  GD ++  L++ L         +   + R GG+EFA   
Sbjct: 208 LSVALLDLDHFKDVNDSGGHAAGDALLVSLAETLNRTLAGCAPSSTVLARQGGDEFAVVT 267

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
            G     A  +A  LR+         ++ P+    +S G+A+   +E    ++ RAD AL
Sbjct: 268 PGLDLDAAVAVAEALRR---------AAAPT---GLSVGVAQLAPREDAGALLRRADTAL 315

Query: 245 YVAKKSGRNRVV 256
           Y AK +GR+RV 
Sbjct: 316 YEAKAAGRSRVA 327


>gi|332304717|ref|YP_004432568.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172046|gb|AEE21300.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 960

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 17/193 (8%)

Query: 85  ISGSIL---KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFF 134
           I GSIL   K+     N I  ++  D L+G      F       I+      ++L+++  
Sbjct: 505 IYGSILDISKQKAADQN-IEYMASHDTLTGFYQRQEFEKRLHAAINQAKQEQDELTLLHV 563

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           +ID FK IND +GH  GD ++   S  ++ +      +GRLGG+EF     GS+ Q + +
Sbjct: 564 NIDQFKAINDTYGHKAGDAILRQFSQLMLKIVTVDNMIGRLGGDEFGILLTGSNAQNSFM 623

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSG 251
           LAN L   ++N      S     ++I   I +    E +++   ++  AD A Y+AK  G
Sbjct: 624 LANKLLNTVQNYDF---SWEERRLSIGISIGQVSWNEKVTSSEQLLSMADSACYMAKTLG 680

Query: 252 RNRVVCFSDIENN 264
           RNR+  +S  +  
Sbjct: 681 RNRLHTYSSTDKQ 693


>gi|328949307|ref|YP_004366644.1| diguanylate cyclase/phosphodiesterase [Treponema succinifaciens DSM
           2489]
 gi|328449631|gb|AEB15347.1| diguanylate cyclase/phosphodiesterase [Treponema succinifaciens DSM
           2489]
          Length = 821

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 101/193 (52%), Gaps = 9/193 (4%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEK 128
           + I++++ L++  +  S   EL  S  ++  +   D L+ L N     A  + +    + 
Sbjct: 372 IFIAVSLILIISQVKDSY--ELRRSNLKMEYMLGHDSLTDLPNRFKTQAVFNDIQKSGKN 429

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGS 187
            S+V FDID FK IND + H  GD V+  ++ +L     G  +FV R GG+EF    L  
Sbjct: 430 FSLVLFDIDDFKNINDFYSHACGDIVLKTIASRLKSYSAGKDIFVSRFGGDEFLVLYLEK 489

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
              E +I  ++LR I++ S IN +   +IHI  S GI    + + +  +I  AD ALY A
Sbjct: 490 QLNEDSIEIHELRAILK-SPINYAES-NIHIQSSLGIVN-SNDDEMEKMIQNADIALYRA 546

Query: 248 KKSGRNRVVCFSD 260
           K SG+N+ V F++
Sbjct: 547 KNSGKNKSVFFNE 559


>gi|163743988|ref|ZP_02151357.1| diguanylate cyclase, putative [Phaeobacter gallaeciensis 2.10]
 gi|161382748|gb|EDQ07148.1| diguanylate cyclase, putative [Phaeobacter gallaeciensis 2.10]
          Length = 511

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 8/167 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           + +   S  D L+G+ N   F+  L            +L ++ FD D FK  ND  GH  
Sbjct: 328 DELHDQSTRDPLTGVYNRRYFLGELRNAVALADRRASQLGVLSFDADRFKTFNDTHGHDA 387

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  + D L  +F       R+GGEEFA     + +++   +   LR  IE+  +  
Sbjct: 388 GDMVLRAIGDTLKELFHNGEVCCRMGGEEFAVFLPDTDKEQTIEVGEALRAAIEDITLRY 447

Query: 211 SSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256
            SG    +TIS G+A       +   +++ AD+ALY AK +GRN VV
Sbjct: 448 GSGTLPRVTISIGVASYPEDGLLPQDLMHAADRALYAAKDAGRNCVV 494


>gi|297578786|ref|ZP_06940714.1| GGDEF family protein [Vibrio cholerae RC385]
 gi|297536380|gb|EFH75213.1| GGDEF family protein [Vibrio cholerae RC385]
          Length = 443

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 34/172 (19%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+G +N       L             +S++F DIDYFKQ+ND +GH +GD +
Sbjct: 272 EMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDL 331

Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KII 203
           +             SD+LV          R GGEEF      ++ ++A  LA  LR KI 
Sbjct: 332 LREFALVISREIRESDKLV----------RWGGEEFVVFCAQTTLEQAIELAERLRAKIA 381

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++S I+  +     IT S GIA+    E I+  + RAD+ALY AK+ GRNR+
Sbjct: 382 DHSWIHGGA-----ITCSLGIAQ-MGDERITETVSRADEALYRAKRLGRNRI 427


>gi|313498336|gb|ADR59702.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas putida BIRD-1]
          Length = 699

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 89/181 (49%), Gaps = 14/181 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVF-FDIDYFKQIND 144
           E   ++ +I  ++  D L+GL N + F   L      GS N KL+     D+D FK IND
Sbjct: 264 EELAAHAQIHHMAHHDALTGLPNRTLFHERLRQALLRGSENAKLTAALCLDLDNFKNIND 323

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKII 203
           + GH  GDK++  L  +L         + RLGG+EFA    G   ++AA   A  L K I
Sbjct: 324 SLGHAFGDKLLRELGKRLRRELREHDTLARLGGDEFAVVLTGLEGRDAACNTAQRLIKAI 383

Query: 204 ENS-QINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
               QI    G    + +S GIA      +    ++  AD ALY AK++GRNR  CF D+
Sbjct: 384 SPPFQIE---GHQFVVGVSIGIAIAPDDNDQAEQLLGYADMALYQAKRNGRNRYECF-DV 439

Query: 262 E 262
           E
Sbjct: 440 E 440


>gi|268680322|ref|YP_003304753.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618353|gb|ACZ12718.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 405

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 19/173 (10%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +++ ID L+G+ +  A          +  I   DID+FK+ ND FGH +GD V+  ++ +
Sbjct: 234 KMAYIDTLTGIPSRRALEERFLRLGSRYVIAMVDIDFFKKFNDTFGHDIGDDVLKLVAKE 293

Query: 162 L-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII-------------ENSQ 207
           L  V  G   F  R GGEEF     G  ++E  +   ++R+ I               S 
Sbjct: 294 LNHVKNGGKAF--RYGGEEFTILFSGKKKEECIMALEEVREAIFRRGFVIRDKNRPAKSS 351

Query: 208 INISSGPSI---HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               + PS     +++S G+A     +    II +AD ALY AK+SGRN ++C
Sbjct: 352 KATKTNPSPKKERLSVSIGVALSQKGKTPQEIIKKADDALYKAKESGRNCLIC 404


>gi|220934896|ref|YP_002513795.1| putative diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996206|gb|ACL72808.1| putative diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 778

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 13/170 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           SI  +L  +YNR+        L  +L     ++    Y   +S+V FD+D FK++ND  G
Sbjct: 621 SITDKLTGAYNRLK-------LDEVLQQQHALAE--RYKRPVSVVMFDLDDFKRVNDTHG 671

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD ++   ++ ++ +       GR GGEEF      ++  +AA LAN +R  ++ ++
Sbjct: 672 HHAGDLILRRFTELVLSLARKSDVFGRWGGEEFLLICPETTALDAADLANRVR--VQLAE 729

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I      +   T+S+GIAE    + ++  I  AD+ LY AK+ GRNRVV 
Sbjct: 730 IVFEEVGT--QTVSSGIAELRPSQSVNDWISHADKRLYQAKQQGRNRVVS 777


>gi|167622217|ref|YP_001672511.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167352239|gb|ABZ74852.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 392

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 105/221 (47%), Gaps = 29/221 (13%)

Query: 53  IGLTPFYGL-EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           I LT F  L  + L + + L I+   +S+L    +  +   LF  Y+    L+  D L+G
Sbjct: 181 IALTQFIWLFHHYLPKEMPLAIL---LSML---ATAYLFSMLFALYD----LAYKDELTG 230

Query: 112 LLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           L +  A  +   S N   S+   DID+FK+ ND +GH VGD+V+  ++ +L  V G    
Sbjct: 231 LSSRRALNTMALSLNNHYSLAMIDIDHFKKFNDTYGHDVGDQVLRLVAKKLSKVKGGGQ- 289

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-----------------SSGP 214
           V R GGEEF       + +       +LR  I +  I +                  +  
Sbjct: 290 VFRYGGEEFTIVFENKNIERVLPHLEELRHKISHYDIVLREQGRKSRSKLDRNSKHKANQ 349

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +++ITIS G+AE+  +      + RAD+ALY AK +GRN V
Sbjct: 350 ALNITISIGVAEQHGETTFEKTLKRADEALYKAKNNGRNCV 390


>gi|153829619|ref|ZP_01982286.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|148874895|gb|EDL73030.1| GGDEF family protein [Vibrio cholerae 623-39]
          Length = 443

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 34/172 (19%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+G +N       L             +S++F DIDYFKQ+ND +GH +GD +
Sbjct: 272 EMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDL 331

Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KII 203
           +             SD+LV          R GGEEF      ++ ++A  LA  LR KI 
Sbjct: 332 LREFALVISREIRESDKLV----------RWGGEEFVVFCAQTTLEQAIELAERLRAKIA 381

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++S I+  +     IT S GIA+    E I+  + RAD+ALY AK+ GRNR+
Sbjct: 382 DHSWIHGGA-----ITCSIGIAQ-MGDERITETVSRADEALYRAKRLGRNRI 427


>gi|160899486|ref|YP_001565068.1| diguanylate cyclase [Delftia acidovorans SPH-1]
 gi|160365070|gb|ABX36683.1| diguanylate cyclase [Delftia acidovorans SPH-1]
          Length = 416

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 92/198 (46%), Gaps = 24/198 (12%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS- 124
           +E+L L++   T  L          +EL      + ++S  D L+G LN  A    L S 
Sbjct: 225 IEHLDLLVAQRTAQL----------EELV---EEVKRMSLTDALTGCLNRRAMDERLASE 271

Query: 125 ------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV---IAFLSDQLVVVFGTPMFVGRL 175
                     LS++F D+D FKQ+ND  GH  GD V   +A      +    +  ++ R 
Sbjct: 272 VAQGQRLGAALSVMFVDVDRFKQVNDRHGHAAGDAVLREVALRCRHALEREPSAQWMARY 331

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           GGEEF     G +  +A  LA  LR+ I ++ I +  G  +  T S G+A+    E    
Sbjct: 332 GGEEFLIVMPGVAAAQAWALAGQLREAIRSTPIQV-HGLELAATASFGVAQLQGAESAQE 390

Query: 236 IIYRADQALYVAKKSGRN 253
           ++ RAD  LY AK +GR+
Sbjct: 391 LLQRADAMLYEAKHAGRD 408


>gi|241203375|ref|YP_002974471.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240857265|gb|ACS54932.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1059

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 60/179 (33%), Positives = 84/179 (46%), Gaps = 16/179 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQIND 144
           EL +  NRI   S  D L+ L N      +L S         +K SI+  D+D FK IND
Sbjct: 620 ELELVKNRIEHNSLHDPLTALANRRKLDIALESLTHDGRQQRQKFSILHIDLDRFKDIND 679

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN----DLR 200
             GH  GD ++   S  L         V R+GG+EF   AL   ++E A L+     ++R
Sbjct: 680 TLGHAAGDAMLVHASKVLAKNVRGSDIVARIGGDEFVILALDVGDKEMAQLSTRIIEEMR 739

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + I+    +   G SI I ++ GI     K     ++  AD ALY AK +GRNR   F+
Sbjct: 740 QPIDFQGFSCRCGVSIGIALANGIHVDARK-----VLINADIALYRAKSTGRNRFEFFN 793


>gi|126640617|ref|YP_001083601.1| hypothetical protein A1S_0546 [Acinetobacter baumannii ATCC 17978]
          Length = 657

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 12/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +   ++ LS  D L+ L N           +S     ++K++ ++ D+D FK +ND
Sbjct: 219 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSDHRYKDQKIAFLYIDLDRFKSVND 278

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH +GD+++  ++++L         + R+GG+EF   A  +  +EA  LA  +  +I+
Sbjct: 279 AFGHHIGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLIAENTDTEEAMQLAEKVLHLIQ 338

Query: 205 NS-QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +S QI   SG  I+I+ S GIA    H + +  ++  AD A+ ++K+ GRN    FS
Sbjct: 339 DSYQI---SGKEINISASLGIALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTVFS 392


>gi|77918682|ref|YP_356497.1| sensory box/GGDEF family protein [Pelobacter carbinolicus DSM 2380]
 gi|77544765|gb|ABA88327.1| sensory box/GGDEF family protein [Pelobacter carbinolicus DSM 2380]
          Length = 808

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 21/176 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ QL+  D L+GL N +   + L             L++++ D+D FK+IND +GH  G
Sbjct: 600 QVRQLAFYDALTGLPNRTLLANRLDQSLAQAQRDGRMLALLYLDLDRFKEINDTYGHAAG 659

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKI------IE 204
           D V+   + +L         V RLGG+EF     G  +  +   +A  + K+      +E
Sbjct: 660 DMVLQAAAQRLNSCIRRNDTVARLGGDEFVVLLPGLENVDQPTTVAEKILKVMKVPFQVE 719

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + Q+N++  PSI + +        H + +  ++ RAD A+Y AK  GRN   CFS+
Sbjct: 720 SQQLNVT--PSIGMVLYPE-----HGQELGVLLKRADIAMYAAKSRGRNGYACFSE 768


>gi|313682781|ref|YP_004060519.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM
           16994]
 gi|313155641|gb|ADR34319.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM
           16994]
          Length = 772

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 11/174 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDN 145
           L +  N++ +L+ ID L+ + N   F      SY E       L+I+  D+D+FK+ NDN
Sbjct: 596 LKLKNNQLKELAMIDGLTQIANRRFFDQMYEKSYKEVLRDHKTLAILMIDVDHFKRYNDN 655

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD  +  ++  L      P   + R GGEEF         + A  ++  L K +E
Sbjct: 656 YGHAKGDACLIAIAKVLKKSLKRPSDVIARYGGEEFVVLLKSIDFEGAKQVSLSLVKAVE 715

Query: 205 NSQINIS-SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
             +I+   S  + HITIS G+A +  +E I+  +++ +AD ALY AK  GRNRV
Sbjct: 716 GLKISHEYSSAADHITISIGMAFKEAEEEITKESLLKKADDALYEAKAGGRNRV 769


>gi|114705020|ref|ZP_01437928.1| hypothetical protein FP2506_08786 [Fulvimarina pelagi HTCC2506]
 gi|114539805|gb|EAU42925.1| hypothetical protein FP2506_08786 [Fulvimarina pelagi HTCC2506]
          Length = 252

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 105/227 (46%), Gaps = 14/227 (6%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG--YISGSILKELFISYNR 99
           V+  A  F   +G   F+  ++       +++ ++ +SL++G  +I   +++   +   R
Sbjct: 2   VLICATAFFSGLGAAVFFA-DFPSAAFSRVLVFAVLLSLVVGALHIGHILIRTTILDTQR 60

Query: 100 ISQLSRI--DCLSGLLNHSAFISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHP 149
               +R   D L+GLLN   F  +  +    +         ++  D D+FK+IND FGHP
Sbjct: 61  RGWKNRAMRDRLTGLLNRQGFRDAWNTKTMAMREDGRTGSMLLIIDADHFKRINDRFGHP 120

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD+ +  ++             GRLGGEEF  A  G ++ +  ++A  +R  +    + 
Sbjct: 121 IGDQALKAIARTTAGSLRGDDICGRLGGEEFIVAVHGLTQNQGYVIAERIRSAVSRLTVG 180

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            ++G    +T+S G A          +   AD+  Y +K+ GRNRV 
Sbjct: 181 -ANGHEARLTVSIGGAFSGGGAGFDALYKAADENCYRSKRGGRNRVT 226


>gi|89107874|ref|AP_001654.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           W3110]
 gi|85674818|dbj|BAA35810.2| predicted diguanylate cyclase [Escherichia coli str. K12 substr.
           W3110]
          Length = 452

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +         + R+GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 404

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 405 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 441


>gi|74316505|ref|YP_314245.1| diguanylate cyclase [Thiobacillus denitrificans ATCC 25259]
 gi|74056000|gb|AAZ96440.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 363

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 117/244 (47%), Gaps = 17/244 (6%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS 86
           F + +    ++F  T +    +   Y    P +    +L   L++ I +   SL+ GY  
Sbjct: 113 FGVKWMALSALFATTGLIAVGLLSDYWTQHPIWIFSLLL---LNVAIPAYVASLIRGYHE 169

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEK----LSIVFFDIDYF 139
                +L      + +++  D L+GL N +AF S L    S+ ++    +++++FD+D F
Sbjct: 170 SR--AQLARYAGEMEEIALTDTLTGLPNRAAFFSQLQKAVSHAQRTQSSIALLYFDLDGF 227

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQ+ND+ GH  GD ++   + ++         + RLGG+EF    L + ++E  +     
Sbjct: 228 KQVNDSLGHAHGDSLLKQTALRVGQCLRGEDVLARLGGDEF-VVLLNAQDKEKRVEKVAA 286

Query: 200 RKIIENSQINISSGPSIHITISAGI--AERCHKEPIST--IIYRADQALYVAKKSGRNRV 255
           R +   + I+   G  + +T SAGI      H   + +  +I+ AD+ +Y AKK G+N+ 
Sbjct: 287 RILQAVASIDQVDGHRVEVTASAGIVLVSGAHAAALGSEGMIHEADKNMYAAKKKGKNQT 346

Query: 256 VCFS 259
           V  S
Sbjct: 347 VLSS 350


>gi|86609610|ref|YP_478372.1| sensory box protein [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558152|gb|ABD03109.1| sensory box protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 671

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 13/156 (8%)

Query: 107 DCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GL+N  +F   L       Y+E L++ F D+D+FK IND FGH VGD ++  ++++
Sbjct: 500 DALTGLVNRESFRERLQQTLQQYYSECLALFFVDLDHFKDINDTFGHSVGDALLQGVAER 559

Query: 162 LVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHI 218
           L         V R GG+EF      +GSS     + A   ++I++  Q   S  G S+ +
Sbjct: 560 LTKCVRPGDIVARWGGDEFTLLLPRIGSS----TVAARLAQRIVDVFQTPFSCEGHSLSV 615

Query: 219 TISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253
           T S G+A        +ST+++ AD ALY  K++GR+
Sbjct: 616 TCSIGVALYPQDGVEVSTLLHHADLALYQVKENGRS 651


>gi|84623096|ref|YP_450468.1| hypothetical protein XOO_1439 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84367036|dbj|BAE68194.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 798

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 9/164 (5%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL+N       L        S     ++ F D+DYFK +ND FGH VGDK +   +
Sbjct: 370 DALTGLINRHEIERRLQLLIELPRSPQMCHALCFVDMDYFKLVNDTFGHAVGDKFLCHFA 429

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           D + +      ++GRLGG+EFA     +   +A  L   +  ++     +   G  +  +
Sbjct: 430 DVITMQLRPGDWLGRLGGDEFAILLANTDLPQARALLEGMHAVL-GQPWSHQGGRPLTPS 488

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            S G+ E R     +++++  AD A + AK+ GRNR+ CF++ +
Sbjct: 489 CSFGVVEIRQSASDVNSLMTAADLACHAAKEEGRNRIRCFNETD 532


>gi|85711302|ref|ZP_01042361.1| putative diguanylate cyclase (GGDEF) [Idiomarina baltica OS145]
 gi|85694803|gb|EAQ32742.1| putative diguanylate cyclase (GGDEF) [Idiomarina baltica OS145]
          Length = 468

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 121/257 (47%), Gaps = 29/257 (11%)

Query: 15  HEKNLESFSPHTFMIYFSIFFSIFIATV------IFIANIFLFYIG--LTPFYGLEYILV 66
           H + +E+    +F ++F I   ++IAT       +FI  IF   +   ++  + +++ LV
Sbjct: 222 HSQRIEA----SFTVFFIILPFLWIATTTSQLTTVFILAIFSTVLAFLVSQLHVIDFALV 277

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
              +++  +  +   L       +  L     +++Q    D L+   +   FI  L    
Sbjct: 278 YQFAMITTAGCVWFAL------TIPTLMTQNAQLAQRVARDGLTKAASRGHFIQRLEAEL 331

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              + N    +V FD D+FKQIND  GH +GD+V+  +++ +  +      +GR GG+EF
Sbjct: 332 QRSTPNSTCCLVIFDFDFFKQINDRHGHILGDRVLVSVTNYVSQLLRENDIMGRFGGDEF 391

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYR 239
                 +   EA ++A  L   I    I+    P   +T S G+ E CH  E   + I R
Sbjct: 392 MLMFPATEFSEAQVIAKRLCTGISQLTIDGLDEP---VTCSFGVVE-CHPSEHAVSAIDR 447

Query: 240 ADQALYVAKKSGRNRVV 256
           AD+AL +AK+ GR +VV
Sbjct: 448 ADRALLLAKQRGRRQVV 464


>gi|325122120|gb|ADY81643.1| putative two-component response regulator with GGDEF domain
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 404

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 83/174 (47%), Gaps = 11/174 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           EL     ++S LS+ D L+GL N      +L +       +   L+I+  DIDYFK  ND
Sbjct: 217 ELMQQAQQLSLLSQQDALTGLANRRYLDETLDNEWRRALRHETPLTIMMVDIDYFKAYND 276

Query: 145 NFGHPVGDKVIA-FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GH  GD+ +         +   +   V R GGEEF      ++ Q+A I    L   I
Sbjct: 277 TLGHLKGDECLKEIAIAISSIAARSGDLVARYGGEEFLLLFPMTNSQQALIQVERLMNAI 336

Query: 204 ENSQI-NISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254
               I +  S  S H+TIS G+A    +  + IS  + RAD ALY AK +GRN+
Sbjct: 337 NKIAIKHPCSDVSPHVTISVGVATTIPRLNDSISAFVARADHALYKAKTNGRNQ 390


>gi|323492042|ref|ZP_08097207.1| c-di-GMP phosphodiesterase A-related protein [Vibrio brasiliensis
           LMG 20546]
 gi|323313771|gb|EGA66870.1| c-di-GMP phosphodiesterase A-related protein [Vibrio brasiliensis
           LMG 20546]
          Length = 683

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 91/171 (53%), Gaps = 14/171 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++QL+  D L+GL N S  +  LG       + N+  ++ + D+D FK IND+ GH +G
Sbjct: 237 KLNQLAYYDSLTGLANRSLLLQLLGKSIDDANTSNQAGALFYLDLDRFKTINDSLGHTIG 296

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D +I  +S ++     +     R+GG+EFA     +S ++A  LA  L  ++ N   +I 
Sbjct: 297 DNLIKAISKRIEAWLKSDFTAARIGGDEFALLLPNTSTEKAHELAQQLLALVSNP-YSID 355

Query: 212 SGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFS 259
               ++ T+S GIA        ST   ++ +AD ALY AK +GRN+ + + 
Sbjct: 356 DH-QLYCTVSVGIA--VFPSVGSTNIDVLRQADTALYRAKVAGRNKYMFYE 403


>gi|297530793|ref|YP_003672068.1| response regulator receiver modulated diguanylate cyclase
           [Geobacillus sp. C56-T3]
 gi|297254045|gb|ADI27491.1| response regulator receiver modulated diguanylate cyclase
           [Geobacillus sp. C56-T3]
          Length = 542

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 90/191 (47%), Gaps = 26/191 (13%)

Query: 85  ISGSILKELFISYNRISQLSR-------IDCLSGLLN-------HSAFISSLGSYNEKLS 130
           I+     ELF+   R+ +  R       ID L+G+ N       ++   S L  Y     
Sbjct: 205 ITTPAADELFVRVRRLIEKKRKIDDLVLIDELTGVYNRKYLPRVYARLRSDLERYGAPSC 264

Query: 131 IVFFDIDYFKQINDNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           +   D+D+FKQ+ND FGH  GD    K+ AFL        G    V RLGGEEF      
Sbjct: 265 LALLDLDHFKQVNDRFGHLAGDAVLQKLAAFLRQH---TRGVDTVV-RLGGEEFVVWLAK 320

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQAL 244
           +S+ EA  +   L++     ++  + G  +  T SAG+ E C +   P+   +  AD+AL
Sbjct: 321 TSKSEARAVLERLQRQFAAEKVE-ADGALLSCTFSAGLVE-CDEPDRPLDYWLRLADKAL 378

Query: 245 YVAKKSGRNRV 255
           Y AK+ G NR+
Sbjct: 379 YAAKRGGGNRI 389


>gi|184156874|ref|YP_001845213.1| EAL domain-containing protein [Acinetobacter baumannii ACICU]
 gi|183208468|gb|ACC55866.1| EAL domain protein [Acinetobacter baumannii ACICU]
          Length = 684

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 12/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +   ++ LS  D L+ L N           +S     ++K++ ++ D+D FK +ND
Sbjct: 246 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSDHRYKDQKIAFLYIDLDRFKSVND 305

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH +GD+++  ++++L         + R+GG+EF   A  +  +EA  LA  +  +I+
Sbjct: 306 AFGHHIGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLIAENTDTEEAMQLAEKVLHLIQ 365

Query: 205 NS-QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +S QI   SG  I+I+ S GIA    H + +  ++  AD A+ ++K+ GRN    FS
Sbjct: 366 DSYQI---SGKEINISASLGIALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTVFS 419


>gi|218779937|ref|YP_002431255.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01]
 gi|218761321|gb|ACL03787.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01]
          Length = 399

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 114/223 (51%), Gaps = 14/223 (6%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY- 97
           +A +++  N+   Y G    +G++ I +   +++ ++++  L   ++     ++L  S  
Sbjct: 176 MAVMVYFVNVAADYTGKD--FGIQQINIVTFTVLAVALSRVLYYAHVRDFKNRKLIKSQK 233

Query: 98  NRISQLSRIDCLSGLLNHSAF--ISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPV 150
            R+ +LS  D L+ +LN  +F  IS + +   +     LS++ FD D FK IND  GH  
Sbjct: 234 QRLLELSNKDHLTNVLNRRSFAEISEVETARSRRHAGPLSLIIFDFDNFKCINDQSGHSA 293

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+   ++ +         + R GGEEF   +  ++ ++AA LA+ LR +IE  +   
Sbjct: 294 GDAVLVHTAELIQQNIRKTDILFRWGGEEFIILSPETALEDAAALADKLRLLIE--EYTF 351

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             G  +  T S G A+  H E I   I RAD+ALY AK  GRN
Sbjct: 352 PHG--VKATASFGAAQYTHGESIEDTIQRADKALYQAKTKGRN 392


>gi|94270482|ref|ZP_01291755.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93450777|gb|EAT01829.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 271

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 8/160 (5%)

Query: 107 DCLSGLLNHSA------FISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GL NH+A        +S    N   L +   D+D+FK++ND +GH  GD+V+  L+
Sbjct: 102 DAMTGLYNHTAGKEHLNLATSTAQRNGSPLCLAIIDVDWFKKVNDTYGHATGDQVLITLA 161

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L     T   V R GGEEF A   G     A  + +++R+     +       + H +
Sbjct: 162 RLLKQRLRTTDIVCRFGGEEFGAILPGCDLPTAQRIMDEMRQSYAAIEFRADE-VTFHSS 220

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            S G+A     +    +   AD +LY AK  GRNRVV ++
Sbjct: 221 FSCGVASIADCDGPVELWKAADMSLYAAKNGGRNRVVTWT 260


>gi|121998494|ref|YP_001003281.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Halorhodospira halophila SL1]
 gi|121589899|gb|ABM62479.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Halorhodospira halophila SL1]
          Length = 749

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 94/182 (51%), Gaps = 13/182 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           S + +L  +++R   L+  D L+GL N S F       I+    +  ++ ++F D+D+FK
Sbjct: 301 SDITQLKDAHSRSEYLANHDPLTGLPNRSLFQDRLQQAIAQTQRHEGQVGLMFLDLDHFK 360

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH VGD+++  ++++L  +      V R+GG+EF         +E   +A    
Sbjct: 361 TINDTLGHEVGDELLVQVAERLGELVRDVDTVARIGGDEFTVVLTDCDPEEVGSIAQ--- 417

Query: 201 KIIEN-SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV-VC 257
           +++E      +  G  +  T SAG+A      E + T+   AD A+Y AK+ GRNR+ +C
Sbjct: 418 RLVEGLGGTFVVDGRELQATPSAGLALYPRDGEDVHTLCKAADMAMYRAKEDGRNRLRLC 477

Query: 258 FS 259
            S
Sbjct: 478 ES 479


>gi|103485521|ref|YP_615082.1| diguanylate cyclase [Sphingopyxis alaskensis RB2256]
 gi|98975598|gb|ABF51749.1| diguanylate cyclase [Sphingopyxis alaskensis RB2256]
          Length = 584

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 79/165 (47%), Gaps = 8/165 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           R   L+R D L+GL N   FI S+          N   +++  DID FK IND  GH  G
Sbjct: 401 RAQTLARRDPLTGLANRRGFIDSVTPLLDRARVGNLPAALLLVDIDRFKSINDIHGHEAG 460

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  +  ++    G    V RLGGEEF    +G      +  A  +R+ + +   ++ 
Sbjct: 461 DAVLCTIGQRIERWEGPMCTVARLGGEEFGLLTIGMEGIVLSRFAESIRRGLADCDHSVI 520

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G    +T S G+AE         +   AD+ALY AK+ GRNRV+
Sbjct: 521 VGDR-PVTASIGVAEVRPACDFKQLYRVADEALYDAKRGGRNRVI 564


>gi|323487725|ref|ZP_08092983.1| response regulator receiver domain-containing protein [Planococcus
           donghaensis MPA1U2]
 gi|323398459|gb|EGA91247.1| response regulator receiver domain-containing protein [Planococcus
           donghaensis MPA1U2]
          Length = 577

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 17/175 (9%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L ++   + QL+  D L+ + N       L +   +       LSI+  DID+FK +N
Sbjct: 405 QQLELAKQELEQLANTDRLTQIPNRLRLDQVLETELRRAQHDAVPLSIILLDIDHFKSVN 464

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGH +GD V+  ++  L         VGR GGEEF      ++  +A  L++ +R+  
Sbjct: 465 DQFGHQIGDIVLTEVAKLLKDHIRAGDTVGRWGGEEFLIICPDTTIDDAIRLSSKIREQF 524

Query: 204 EN---SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           E     ++   +G       S G+      + ++T + RAD ALY AK  GRNRV
Sbjct: 525 EQYHFQEVERKTG-------SFGVTAYMAGDTLNTFVSRADHALYQAKDKGRNRV 572


>gi|289646639|ref|ZP_06477982.1| GGDEF [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 328

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 121/232 (52%), Gaps = 21/232 (9%)

Query: 31  FSIFFSIFIATVIFIANIFL--FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG- 87
            S+FF  FI  V   A I+L  +   LT   G+++     LS V + I+ +LL G ++  
Sbjct: 108 MSVFFVKFIDYVAAAALIWLIMWQTDLTAV-GVDH---APLSYVFL-ISSTLLGGSLNAN 162

Query: 88  --SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVF--FDIDYFK 140
             S++ +   + +R  +LS+ D L+   N  A ++SL    + ++K S+ F   D+D FK
Sbjct: 163 FLSLVMQTMAASDRYQKLSKTDTLTNAPNRRALVASLDNALTSDDKSSLWFAMLDLDNFK 222

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            INDN GH VGD V+   +  +    G   F GRLGGEEF       S   AA     + 
Sbjct: 223 SINDNHGHDVGDNVLICFATLIKNTTGLVNF-GRLGGEEFGVML---SAANAADAIAAMD 278

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            ++ ++Q + ++   +  + SAGIA     + ++ ++  AD+ LY+AK+SGR
Sbjct: 279 HLLMHAQKDQTA--KMPYSFSAGIASLARAKNVNDLLKEADENLYLAKRSGR 328


>gi|288941968|ref|YP_003444208.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
 gi|288897340|gb|ADC63176.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
          Length = 365

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 81/175 (46%), Gaps = 17/175 (9%)

Query: 107 DCLSGLLNHSAFISSLGS-YNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   +G  +NE L      + V  DID+FK+IND  GH  GD+V+   +
Sbjct: 156 DTLTGLYNARHFWECIGQCFNEHLHTGVSFAFVILDIDFFKRINDTHGHLGGDRVLEQFA 215

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R+GGEEFA      S  E     + L  ++    I I     I +T
Sbjct: 216 SALRESTRKTDIVARIGGEEFALILHNVSSDETKQYLHRLHGLLRERDIRIGPEQRIKVT 275

Query: 220 ISAG-------IAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFSDIENN 264
            S G       +       PI+T   I+ RAD ALY  K +GRN ++ + ++ ++
Sbjct: 276 ASVGYYVIEKPLPPALTVPPITTTQDIVKRADDALYWVKNNGRNGIMAWHELTHD 330


>gi|262370287|ref|ZP_06063613.1| diguanylate cyclase [Acinetobacter johnsonii SH046]
 gi|262314629|gb|EEY95670.1| diguanylate cyclase [Acinetobacter johnsonii SH046]
          Length = 389

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 83/158 (52%), Gaps = 17/158 (10%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ L N   F  +      +LS     ++  DID+FK+IND +GH VGD+++     Q
Sbjct: 227 DPLTHLFNQRGFNEAAKRKLHQLSKQPYFLLMCDIDHFKKINDTYGHLVGDQIL----QQ 282

Query: 162 LVVVFG----TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +V + G    T   VGR GGEEF           A  +AN +R  I ++++   S  +I 
Sbjct: 283 VVEIIGQNVRTHDLVGRFGGEEFIVLLQIDDPTLAYNIANRIRLGIADARL---SSKNIA 339

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +T S G+A   H+  +   I+ ADQ LY AK SGRN++
Sbjct: 340 VTASFGLAA-VHQPNLKYAIHDADQLLYQAKHSGRNQI 376


>gi|188575690|ref|YP_001912619.1| Putative signal protein with PAS(PAC), GGDEF and EAL domains
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520142|gb|ACD58087.1| Putative signal protein with PAS(PAC), GGDEF and EAL domains
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 798

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 9/164 (5%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL+N       L        S     ++ F D+DYFK +ND FGH VGDK +   +
Sbjct: 370 DALTGLINRHEIERRLQLLIELPRSPQMCHALCFVDMDYFKLVNDTFGHAVGDKFLCHFA 429

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           D + +      ++GRLGG+EFA     +   +A  L   +  ++     +   G  +  +
Sbjct: 430 DVITMQLRPGDWLGRLGGDEFAILLANTDLPQARALLEGMHAVL-GQPWSHQGGRPLTPS 488

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            S G+ E R     +++++  AD A + AK+ GRNR+ CF++ +
Sbjct: 489 CSFGVVEIRQSASDVNSLMTAADLACHAAKEEGRNRIRCFNETD 532


>gi|121592523|ref|YP_984419.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acidovorax sp. JS42]
 gi|120604603|gb|ABM40343.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax sp. JS42]
          Length = 1108

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 89/170 (52%), Gaps = 12/170 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI  LS  D L+GLLN  AF       I    + +E++S+++FD+D FK +N+  GH  G
Sbjct: 672 RIRALSNYDTLTGLLNKKAFDEQLTQAIDRADASHERVSVLWFDLDNFKLVNETLGHAAG 731

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQINI 210
           D+++  + ++L       + V R  G+ F A    + +   A+LA D L ++    QI+ 
Sbjct: 732 DELLLEMGNRLRACLAPHIPVARYSGDAFTAIVPLADQAAVALLAQDALAQLQTTLQIH- 790

Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             G ++ ++ SAGIA         ST+   A+ A+Y  K+ GRN +  F+
Sbjct: 791 --GHAVSVSASAGIAVYPDDARTASTLASAAEVAMYRVKQDGRNGLRFFA 838


>gi|28198202|ref|NP_778516.1| GGDEF family protein [Xylella fastidiosa Temecula1]
 gi|28056272|gb|AAO28165.1| GGDEF family protein [Xylella fastidiosa Temecula1]
          Length = 594

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 20/163 (12%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+G L   A        I         LS+ F DID+FK+IND +GH  GD  +  +
Sbjct: 435 VDGLTGALTRVAIERRLERDIDDARQMGTPLSVAFIDIDHFKRINDEYGHAAGDACLRQV 494

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP---- 214
             ++         +GR GG+E  A   G+    A       R++ E  ++ +SS P    
Sbjct: 495 VQRVRGWLRASDALGRHGGDELIAILPGADLVAA-------RRVAEGIRVAVSSQPFQFE 547

Query: 215 --SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              +  T+S G+A     E I  ++ RAD  LY +K +GR+RV
Sbjct: 548 CTRLRCTLSLGVASWLPDESIEALLQRADNGLYASKAAGRDRV 590


>gi|15595367|ref|NP_248859.1| hypothetical protein PA0169 [Pseudomonas aeruginosa PAO1]
 gi|116053890|ref|YP_788327.1| GGDEF domain-containing protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218888914|ref|YP_002437778.1| putative GGDEF domain [Pseudomonas aeruginosa LESB58]
 gi|254237593|ref|ZP_04930916.1| hypothetical protein PACG_03674 [Pseudomonas aeruginosa C3719]
 gi|254243277|ref|ZP_04936599.1| hypothetical protein PA2G_04085 [Pseudomonas aeruginosa 2192]
 gi|9946001|gb|AAG03559.1|AE004454_11 hypothetical protein PA0169 [Pseudomonas aeruginosa PAO1]
 gi|115589111|gb|ABJ15126.1| putative GGDEF domain [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126169524|gb|EAZ55035.1| hypothetical protein PACG_03674 [Pseudomonas aeruginosa C3719]
 gi|126196655|gb|EAZ60718.1| hypothetical protein PA2G_04085 [Pseudomonas aeruginosa 2192]
 gi|218769137|emb|CAW24897.1| putative GGDEF domain [Pseudomonas aeruginosa LESB58]
          Length = 235

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N    +  L   NE+         +   D+D+FKQ+ND +GH  GD+V+  ++
Sbjct: 63  DPLTGLPNRRMLLERLREENERSQRHGQSYVLAMLDVDFFKQVNDTWGHDSGDRVLVEIA 122

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +          GR GGEEF      +  Q+A  +   +R  +    + + +  ++ +T
Sbjct: 123 RAMESELREYDLCGRWGGEEFLLLLPQTRLQDAGPVLERVRDSVRTLAVRVGT-EALSVT 181

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S G+ E    E  S  + RAD AL  AK+SGR++ V
Sbjct: 182 ASVGVTEHRIGETYSQTVNRADAALLDAKRSGRDKCV 218


>gi|108803901|ref|YP_643838.1| diguanylate cyclase [Rubrobacter xylanophilus DSM 9941]
 gi|108765144|gb|ABG04026.1| diguanylate cyclase [Rubrobacter xylanophilus DSM 9941]
          Length = 378

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 12/179 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDI 136
           Y+   + ++  ++   + +L+  D L+G+ N  +  ++L         Y + LS++ FD+
Sbjct: 201 YVKSQLARQRTLA-EAMHRLAHTDPLTGISNRRSLYAALRREMEAARRYGKPLSVILFDL 259

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK +ND +GH  GD  +  ++            +GR GGEEF   A  +   +A  LA
Sbjct: 260 DRFKLLNDTYGHNQGDAALRRVAHTARAALRASDHLGRWGGEEFIVLAPETDLDQARHLA 319

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             LR+ I    ++   G    +T S G+A     +    ++ RAD+ LY AK  GRNR 
Sbjct: 320 ERLREAI---ALDRPPG-RPPLTASFGVASCRPDDSPEDLLRRADEGLYRAKAGGRNRA 374


>gi|325917091|ref|ZP_08179324.1| diguanylate cyclase with GAF sensor [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536667|gb|EGD08430.1| diguanylate cyclase with GAF sensor [Xanthomonas vesicatoria ATCC
           35937]
          Length = 356

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 13/163 (7%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GL N  AF ++L +        ++ LS+   D+D+FK +ND  GH  GD V+ 
Sbjct: 200 TRTDPLTGLPNRRAFTAALAAATQQTHIASQPLSVALLDVDHFKVVNDVHGHDQGDLVLR 259

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            LS  L         + R GGEEF         Q+A +    LR+ +    I      ++
Sbjct: 260 ELSALLRAHVAGAGTIARYGGEEFVLLLPNVDLQQARVQCEYLRQSVATMSI------AL 313

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +T+S G+A     E +  +I RADQALY AK+ GR++VV   
Sbjct: 314 PVTVSIGVAMLYPHESVEAVIKRADQALYAAKRGGRDQVVALE 356


>gi|325474242|gb|EGC77430.1| GGDEF domain-containing protein [Treponema denticola F0402]
          Length = 987

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQI 142
           K+L  +  +++ LS +D L+G+ N    + ++G           + +S++  DID FKQ 
Sbjct: 808 KDLISANKQLTVLSTVDELTGVGNRRQ-LDTVGKDLWRRGLDNKQPISLIMIDIDLFKQY 866

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD V+  ++  L         FVGR GGEEF      SS  E   +A  LR 
Sbjct: 867 NDLYGHQAGDNVLRTVAQTLQKKLRAKYDFVGRYGGEEFLVLLYNSSASETMKIAEKLRI 926

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRN 253
            I+N  I  S+  +  +TIS G         +S  T++  AD ALY AK+SGR+
Sbjct: 927 EIKNLNIEHSAEKNKILTISLGAYTSVPSNELSYETMLSFADSALYKAKESGRD 980


>gi|319795141|ref|YP_004156781.1| diguanylate cyclase with pas/pac sensor [Variovorax paradoxus EPS]
 gi|315597604|gb|ADU38670.1| diguanylate cyclase with PAS/PAC sensor [Variovorax paradoxus EPS]
          Length = 1013

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 88/174 (50%), Gaps = 13/174 (7%)

Query: 98   NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            +++ +L+R+D L+GL N  AF   L +           ++++F DID FK IND  GH  
Sbjct: 842  SQLIELARLDTLTGLPNRLAFNELLPAALLRAQRTGSAMALMFLDIDAFKTINDTLGHAS 901

Query: 151  GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQIN 209
            GD V+   +++L         V RL G+EF         ++AA  +A  +   I      
Sbjct: 902  GDSVLVEYANRLRSSVRATDIVARLAGDEFVVVLENLPARDAAAGVAQKILAQIRAPAFR 961

Query: 210  ISSGPSIHITISAGIAERCHKE-PIST--IIYRADQALYVAKKSGRNRVVCFSD 260
            + S P + +T S GIA R   + P++   ++  AD ALY AK +GRNR   FSD
Sbjct: 962  LDSQP-LQVTTSIGIAFRLGGDAPVTAEELLAHADSALYAAKSAGRNRFE-FSD 1013


>gi|115358604|ref|YP_775742.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           AMMD]
 gi|115283892|gb|ABI89408.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           AMMD]
          Length = 516

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 11/163 (6%)

Query: 100 ISQLSRIDCLSGLLN----HSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVG 151
           I  L+R D L+GL N    H+     L       +  L++++ D+D FK IND FGH  G
Sbjct: 338 IRHLARHDALTGLPNRHELHAELRRRLAHRPRMPSPALAVMYLDLDGFKAINDRFGHQAG 397

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++++L           R+GG+EF  A   ++ Q  +ILA  + + I ++   +S
Sbjct: 398 DEVLTQVAERLGKTLPPGELAARIGGDEFVVAIDDTTMQACSILAARIIRQI-SAPYTLS 456

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
            G ++ + IS GIA +  H  P   +I +AD ALY AK  G+ 
Sbjct: 457 IGATVSLGISIGIALDDGHGSP-DELIRQADSALYDAKSGGKG 498


>gi|323947186|gb|EGB43194.1| GGDEF domain-containing protein [Escherichia coli H120]
          Length = 476

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 309 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 368

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +         + R+GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 369 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 428

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 429 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 465


>gi|152999891|ref|YP_001365572.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|304409483|ref|ZP_07391103.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|307303841|ref|ZP_07583594.1| diguanylate cyclase [Shewanella baltica BA175]
 gi|151364509|gb|ABS07509.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|304352001|gb|EFM16399.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|306912739|gb|EFN43162.1| diguanylate cyclase [Shewanella baltica BA175]
          Length = 518

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 78/163 (47%), Gaps = 8/163 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +L+ +D L+ L N +A    +         +   L +   DID+FK IND+FGH  GDK
Sbjct: 354 QKLNLLDSLTQLPNRAALEERMDLEYRNYQRHKSPLWVAVADIDHFKTINDSFGHSTGDK 413

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  ++  L        FV R GGEEF       +  + A L N +R+ ++N      + 
Sbjct: 414 TLQVIAMALKNSLRDTEFVARYGGEEFVLLLPDVAPADIAQLLNRVREKVKNIPFKFKNQ 473

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I +T+S G A+    E I     RAD ALY AK   R+RVV
Sbjct: 474 -RITVTVSIGAAQVMGSELIHETFERADAALYKAKHESRDRVV 515


>gi|116255469|ref|YP_771302.1| GGDEF family regulator [Rhizobium leguminosarum bv. viciae 3841]
 gi|115260117|emb|CAK03218.1| putative GGDEF family regulator [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 298

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 93/204 (45%), Gaps = 13/204 (6%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F+  E +      L I S   SL      G I+++     ++  + S  D L+G+ N   
Sbjct: 99  FWMTEAVQKSGWMLCIASDITSL---RAHGRIVRQ---DRDQAIKASYTDELTGVANRRF 152

Query: 118 FISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
            ++ +        +     +  FDID FK+IND  GH  GD V+   + ++  +      
Sbjct: 153 VMARVDDMLTAARHGNNGCLAVFDIDNFKRINDRLGHHAGDVVLRDFAHRIHQIVRRNDC 212

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
            GR+GGEEF      +  ++A  +   +  +I  S+  +   P    T SAGIA     +
Sbjct: 213 FGRVGGEEFVLVMPATGPEDAVAMVERMLTVIRFSR-PLPESPDFSYTCSAGIAACTPSD 271

Query: 232 PISTIIYRADQALYVAKKSGRNRV 255
             S +  RADQALY AK SGR+RV
Sbjct: 272 SASDLYRRADQALYAAKLSGRDRV 295


>gi|330505055|ref|YP_004381924.1| response regulator WspR [Pseudomonas mendocina NK-01]
 gi|328919341|gb|AEB60172.1| response regulator WspR [Pseudomonas mendocina NK-01]
          Length = 340

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 84/169 (49%), Gaps = 13/169 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L + D L+GL N   F   L            +LS++  D+DYFK  ND  GH  GD
Sbjct: 167 LQRLIKSDSLTGLANRRYFDEYLEIEWSRALRDQSELSLLMIDVDYFKAYNDQHGHVAGD 226

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           +V+  + + L            R GGEEFA    G++   A + A  +R+ +E   I   
Sbjct: 227 EVLRRVGESLRSSCTRATDLAARYGGEEFAVIMPGTAAGGARLQAEKIRRAVEAMGIPHD 286

Query: 212 -SGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              P   I++S GIA        +P+S +I +AD+ LY+AK SGRN+VV
Sbjct: 287 LPKPGSPISVSIGIATIRPSVEHDPLSLVI-KADEGLYLAKHSGRNQVV 334


>gi|297623985|ref|YP_003705419.1| diguanylate cyclase [Truepera radiovictrix DSM 17093]
 gi|297165165|gb|ADI14876.1| diguanylate cyclase [Truepera radiovictrix DSM 17093]
          Length = 685

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDID 137
             ++L +L     R+ Q +R D L+GL N          AF ++   Y   LS+   D+D
Sbjct: 509 KAALLAQLREQAERLEQQTREDALTGLYNRRHLEEVLREAFAAAQ-RYRHPLSVALIDLD 567

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND   H +GD V+   ++       T   V R GGEEF      +  Q A  +  
Sbjct: 568 NFKGVNDTLSHQIGDGVLRAAAEVFARFTRTVDIVARYGGEEFVLVMPQTDLQGARAVCE 627

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +R+ IE         P + +T+S G+A+    +    ++  AD  LY AK++G+NRVV
Sbjct: 628 RIREAIEQYPW-WELHPELQVTVSIGLADDLSVKDHEKLLALADDNLYRAKRAGKNRVV 685


>gi|169797059|ref|YP_001714852.1| GGDEF domain-containing protein [Acinetobacter baumannii AYE]
 gi|213156535|ref|YP_002318196.1| diguanylate cyclase [Acinetobacter baumannii AB0057]
 gi|215484520|ref|YP_002326755.1| Uncharacterized protein yneF [Acinetobacter baumannii AB307-0294]
 gi|332852148|ref|ZP_08433975.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332867547|ref|ZP_08437700.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
 gi|169149986|emb|CAM87880.1| putative membrane protein; putative GGDEF domain [Acinetobacter
           baumannii AYE]
 gi|213055695|gb|ACJ40597.1| diguanylate cyclase [Acinetobacter baumannii AB0057]
 gi|213987432|gb|ACJ57731.1| Uncharacterized protein yneF [Acinetobacter baumannii AB307-0294]
 gi|332729520|gb|EGJ60859.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332733964|gb|EGJ65109.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
          Length = 473

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 9/158 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+  L    F+ S+    EK+       +    D+D+FK++ND++GH +GD+ +    
Sbjct: 312 DELTSSLTRRQFLQSVRLLQEKVQKENKTSAFFMLDVDHFKKVNDSYGHLIGDRALQTCV 371

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +  +      +GR GGEEFA     ++ + A  LA  +R  I    I +     I + 
Sbjct: 372 TTIQNILHPHDLLGRFGGEEFAIFIPDTTREAAFELAERIRIQISQQPIYVYGKLPIFVQ 431

Query: 220 ISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S GI+     +   I ++   AD ALY AK+ GRNRV
Sbjct: 432 VSIGISLYSPSYHRSIESLFKEADDALYQAKRQGRNRV 469


>gi|150017747|ref|YP_001310001.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052]
 gi|149904212|gb|ABR35045.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052]
          Length = 367

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 90/167 (53%), Gaps = 17/167 (10%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           S  D L+ + N S F   + +Y     N+   ++F D+D FK INDN GH VGD+V+   
Sbjct: 200 SEYDQLTQIYNKSTFYEKVKNYIIDNKNDNCMLIFIDLDNFKAINDNLGHMVGDEVLKDT 259

Query: 159 SDQLVVVF-GTPMFVGRLGGEEFAAAALGSS----EQEAAILANDLRKIIENSQINISSG 213
           ++++  VF GT + + R GG+EF       S    + + +IL ++L          I + 
Sbjct: 260 ANKICDVFNGTDVIISRFGGDEFCVFKPSHSISFIKDKISILCSNLNATY------IGNN 313

Query: 214 PSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I ++ S G+A    H + + ++I+++D ALY +K++G+N+   ++
Sbjct: 314 TEITVSASIGVAFYPKHGDTLESLIHKSDIALYSSKENGKNQFTIYN 360


>gi|85711376|ref|ZP_01042435.1| GGDEF family protein [Idiomarina baltica OS145]
 gi|85694877|gb|EAQ32816.1| GGDEF family protein [Idiomarina baltica OS145]
          Length = 630

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 90/171 (52%), Gaps = 9/171 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148
           EL  +  ++  L+ +D L+GL N  AF   L    S  +   ++  DID FK  NDN+GH
Sbjct: 463 ELAEANRKLDALAHMDGLTGLFNRRAFDRDLDAAISSGKPYHLMIADIDEFKAYNDNYGH 522

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIE-NS 206
             GD  I  +++ L     TP+ V R GGEE A     + + E+ +  N+LR K+IE N 
Sbjct: 523 EAGDSAIKEIAECLRS--NTPLKVYRYGGEELAMIVPSAYDLESKL--NELRDKVIELNI 578

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             + ++     +++S G A     +   + I RAD+ LY AK++G+N VV 
Sbjct: 579 PHHYTNTDRSCLSLSMGAAPIQRDDDSRSAIRRADKQLYAAKRAGKNCVVT 629


>gi|333024424|ref|ZP_08452488.1| putative GAF domain/GGDEF domain/EAL domain-containing protein
           [Streptomyces sp. Tu6071]
 gi|332744276|gb|EGJ74717.1| putative GAF domain/GGDEF domain/EAL domain-containing protein
           [Streptomyces sp. Tu6071]
          Length = 189

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 83/166 (50%), Gaps = 13/166 (7%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVG 151
            +S  R    +R D L+GL    AF         +E+  +V  D+D+FKQ+ND  GH  G
Sbjct: 1   MLSLRRGLTRARRDPLTGLWTRDAFTRKARRLLRDERAVVVLADVDHFKQVNDRHGHAAG 60

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++A ++ +L    G     GRLGG+EFAA  + +    A     DL  ++       +
Sbjct: 61  DALLASVARRLAHATGPNGVCGRLGGDEFAAVLIDTDGTAA-----DLLTLLHGVLARPA 115

Query: 212 SG-PS-IHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGR 252
            G PS +  T+S G   R    P   +S ++ RAD+A+Y AK++ R
Sbjct: 116 EGQPSEVAATVSLGWV-RAADHPGGDLSALLARADEAMYEAKRAHR 160


>gi|304438464|ref|ZP_07398404.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304368547|gb|EFM22232.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 605

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 14/174 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL     +++QL+  D L+ LLN           +S   +    LS++  DIDYFK +N
Sbjct: 425 EELHTVNQQLTQLAIRDTLTNLLNRREMERLLKEAVSVSQTQKTPLSVILMDIDYFKGVN 484

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH +GDKV+  +SD +           R GG+EF     G+    A  +   +R+ +
Sbjct: 485 DTYGHDMGDKVLLTVSDAISHTIRGSDAGCRWGGDEFFIILQGAPLAVAGRVGERIRRRV 544

Query: 204 ENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV 255
           E +++     P  H +TIS G+A    ++     +++ AD+ALY AKK+GRN V
Sbjct: 545 EEAKM-----PFHHNVTISVGVAAFDPEQDNELQLFKNADEALYQAKKAGRNVV 593


>gi|296156558|ref|ZP_06839396.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. Ch1-1]
 gi|295893157|gb|EFG72937.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. Ch1-1]
          Length = 1059

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 91/185 (49%), Gaps = 21/185 (11%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
           S  RI  L+  D L+ L N   F+  LG          ++++++F D+D FK IND+ GH
Sbjct: 622 SEARIQFLAEHDVLTELPNRELFVKRLGVVLGNARRTGQRVAVLFIDLDRFKNINDSLGH 681

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD ++  +S +L+    T   V RLGG+EF       S       A D+ + IE   +
Sbjct: 682 HIGDSLLRSVSRRLLQAVRTNDTVSRLGGDEFTVILNSVSN------AADVTRTIEERLL 735

Query: 209 NISSGP------SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS-D 260
            +   P      ++ ++ S G+A      E I T++  AD A+Y AK +GRN V  F+ D
Sbjct: 736 PLVRQPHEVGGVTLQVSCSVGVALFPDDGEDIETLMQNADAAMYQAKGAGRNLVKFFAPD 795

Query: 261 IENNT 265
           I   T
Sbjct: 796 IAERT 800


>gi|269104164|ref|ZP_06156860.1| hypothetical protein VDA_000319 [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268160804|gb|EEZ39301.1| hypothetical protein VDA_000319 [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 734

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 21/176 (11%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFI--------SSLGSYNEKLSIVFFDIDYFKQ 141
           + E   + N++ +L+  D L+GL N + F+           GS    LS++F D+D+FK+
Sbjct: 293 ITETKATRNQVEKLAYYDSLTGLPNRALFLKRLKKLLNDDAGSSQLPLSLMFIDLDHFKE 352

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH  GD ++  +   +  +  +   + RLGG+EF   A  +  ++A  +A  L +
Sbjct: 353 INDTQGHDHGDCLLQTIGQTIRSILESHHTLARLGGDEFVVIAPDTDAEQAQTIAYKLHQ 412

Query: 202 IIEN----SQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSG 251
            I         NIS G SI IT+       C K+   +ST++ +AD A+Y AK  G
Sbjct: 413 TISQPIPLKGQNISVGASIGITV-------CEKQGPSVSTLLKQADIAMYRAKAQG 461


>gi|160900263|ref|YP_001565845.1| diguanylate cyclase [Delftia acidovorans SPH-1]
 gi|160365847|gb|ABX37460.1| diguanylate cyclase [Delftia acidovorans SPH-1]
          Length = 392

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 22/206 (10%)

Query: 68  NLSLVIISITISLL-LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--- 123
            LSL++  +  ++L L       ++EL    +R       D L+GLLN  AF  ++    
Sbjct: 198 QLSLLVFGLLFAMLFLAAAVRDTVQELHEERDR-------DPLTGLLNRRAFKEAVQRRL 250

Query: 124 SYNEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
           +   +LS  ++  D+D+FK++ND +GH  GD+V+   +  L+        V R GGEEF 
Sbjct: 251 AEQPQLSAAVLVCDLDHFKRVNDGWGHAAGDEVLQRFARLLLRSTRQQDLVARFGGEEF- 309

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINI---SSGP-SIHITISAGIAERCHKEPISTII 237
            A L  ++  AA      R+I   +Q+ +   S+ P  I IT S G+A     + +   +
Sbjct: 310 VALLPHADPLAAQWIT--RRI--QTQLRLMGFSALPDDIRITASFGVAWMAQGQTLEQAL 365

Query: 238 YRADQALYVAKKSGRNRVVCFSDIEN 263
            RAD  LY AK++GR+RV      E+
Sbjct: 366 ARADAMLYEAKRAGRDRVRLVPQEED 391


>gi|91779130|ref|YP_554338.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
 gi|91691790|gb|ABE34988.1| Putative diguanylate cyclase/phosphodiesterase(GGDEF & EAL domains)
           with PAS/PAC sensor(s) [Burkholderia xenovorans LB400]
          Length = 1059

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 91/185 (49%), Gaps = 21/185 (11%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
           S  RI  L+  D L+ L N   F+  LG          ++++++F D+D FK IND+ GH
Sbjct: 622 SEARIQFLAEHDVLTELPNRELFVKRLGVVLGNARRTGQRVAVLFIDLDRFKNINDSLGH 681

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD ++  +S +L+    T   V RLGG+EF       S       A D+ + IE   +
Sbjct: 682 HIGDSLLRSVSRRLLQAVRTNDTVSRLGGDEFTVILNSVSN------AADVTRTIEERLL 735

Query: 209 NISSGP------SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS-D 260
            +   P      ++ ++ S G+A      E I T++  AD A+Y AK +GRN V  F+ D
Sbjct: 736 PLVRQPHEVGGVTLQVSCSVGVALFPDDGEDIETLMQNADAAMYQAKGAGRNLVKFFAPD 795

Query: 261 IENNT 265
           I   T
Sbjct: 796 IAERT 800


>gi|89094625|ref|ZP_01167562.1| GGDEF domain protein [Oceanospirillum sp. MED92]
 gi|89081095|gb|EAR60330.1| GGDEF domain protein [Oceanospirillum sp. MED92]
          Length = 405

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 16/205 (7%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL- 122
           + V  L+L+++ I I+    ++  +  K L     ++  L+ +D ++GL N +     + 
Sbjct: 196 LFVGGLALIVLGI-ITTAFAFMRKAA-KRLISQQYQLETLATVDSVTGLYNRAEITRRME 253

Query: 123 ---------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                    G    K +++  D+D+FK+INDN+GH  GD+++  ++ +L     +   +G
Sbjct: 254 AEWQRFKRGGPDARKFALLMLDLDHFKRINDNYGHLAGDELLRRVAGRLREELRSYSEIG 313

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG--IAERCHKE 231
           R GGEEF       +  +A  +A  LR  +     ++    ++ IT S G  IA+   K+
Sbjct: 314 RYGGEEFIVLIPEITNCDAYSVAERLRVRLVEPGFDLGD-ETVSITTSIGFAIADDSDKD 372

Query: 232 PISTIIYRADQALYVAKKSGRNRVV 256
            +  +I RAD  LY AK +GRNRVV
Sbjct: 373 -LDALIKRADDCLYEAKGAGRNRVV 396


>gi|329906570|ref|ZP_08274425.1| putative PAS, PAC and GGDEF domain protein [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327547260|gb|EGF32109.1| putative PAS, PAC and GGDEF domain protein [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 448

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 107/220 (48%), Gaps = 14/220 (6%)

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG-SILKELFISYNRISQLSRIDC 108
           L Y  L P  GL +  V N     +    +   G+I+  +  K L I    + + +  D 
Sbjct: 234 LDYRVLLPVQGLRWRNV-NARPTRLPDGSTQWHGFITDITERKRLDIE---LREFATTDY 289

Query: 109 LSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ L N   F++ L     ++       +++  D+D+FK IND  GH  GD V+A  +  
Sbjct: 290 LTRLPNRRHFLTCLREELARIHRGQPSTAVLMCDLDHFKNINDTHGHAAGDLVLAHFAGM 349

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L          GR+GGEEFA    G++   A + A  +R+ +  SQ  + +G  + +T+S
Sbjct: 350 LQEQLRVNDTAGRIGGEEFAIVLSGATLASATLFAERVRQRMA-SQPPMVTGQPLVVTVS 408

Query: 222 AGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
            GIA     +  +  ++ R+D+ALY AK++GR+R+    D
Sbjct: 409 IGIAVMLASDIHVEAVLSRSDRALYRAKEAGRDRIETAVD 448


>gi|322433861|ref|YP_004216073.1| diguanylate cyclase with PAS/PAC and GAF sensors [Acidobacterium
           sp. MP5ACTX9]
 gi|321161588|gb|ADW67293.1| diguanylate cyclase with PAS/PAC and GAF sensors [Acidobacterium
           sp. MP5ACTX9]
          Length = 496

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 84/172 (48%), Gaps = 15/172 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ QL+  D L+GLLN  A          ++  + E LSIV  D+D FK+ ND FGH  G
Sbjct: 317 KLEQLATRDGLTGLLNRRALDEKIELEFENVRRHKEPLSIVLLDVDNFKRRNDQFGHASG 376

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDLRKIIENSQINI 210
           D+V+  L   +          GR GGEE     L  ++ E A+L A  L   I   +  I
Sbjct: 377 DQVLRQLGHLVSNTMRVLDTAGRYGGEEI-VILLPKTDYEGALLFAKRLHDGIHRERWAI 435

Query: 211 SSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDI 261
                  +T S G+A        S  ++ +AD A+Y AK+SG++R+V   D+
Sbjct: 436 EP-----VTASLGVATTSATTKDSNRLLAQADDAMYEAKRSGKDRIVAHRDV 482


>gi|323529554|ref|YP_004231706.1| diguanylate cyclase [Burkholderia sp. CCGE1001]
 gi|323386556|gb|ADX58646.1| diguanylate cyclase [Burkholderia sp. CCGE1001]
          Length = 607

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 90/190 (47%), Gaps = 25/190 (13%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S +  L +    +  L+  D L+GL N   F+  L           + L+++F D+D FK
Sbjct: 394 SQMDALHVKQRELVHLATHDVLTGLPNRMLFMEKLERAIQEATRRRQGLAVLFVDLDRFK 453

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA------I 194
           QIND FGH VGDKV+  ++ +L  V      V RLGG+EF     G    EAA      I
Sbjct: 454 QINDQFGHSVGDKVLVAVALRLKQVLHAADVVARLGGDEFIVLIEGPRSAEAAPGIASRI 513

Query: 195 LANDLRKIIENSQINISSGPSIHITI---SAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           +     +I+ + Q  ++ G SI I+     +G AE         ++  AD A+Y AK  G
Sbjct: 514 MTTLNEEIVMDGQ-GMTVGASIGISQFPDDSGTAE--------ELLLNADAAMYAAKSGG 564

Query: 252 RNRVVCFSDI 261
           R   + + D+
Sbjct: 565 RCAYLRYHDV 574


>gi|295699665|ref|YP_003607558.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1002]
 gi|295438878|gb|ADG18047.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1002]
          Length = 667

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 13/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYF 139
           SG+ + E  ++  R+ + +  D L+GL N +A    +       +  E + ++F D+D F
Sbjct: 220 SGTDITEQRLAQERLIEQATTDPLTGLANRNAIQERIQIAIEQAAPGETVGVLFLDLDNF 279

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF-AAAALGSSEQEAAILAND 198
           K++ND++GH  GD++I  +SD +         + RLGG+EF   AA GS    A  L + 
Sbjct: 280 KKVNDHYGHVFGDRLICDVSDAIRNCLNPGDSLARLGGDEFIVLAAKGS----AHGLEDI 335

Query: 199 LRKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            ++I++  ++  + G   ++   S GIA    H E + ++I  AD A+YVAK  G+    
Sbjct: 336 AQRILDRMRMPFAVGLVEVYTGCSIGIARWPEHGETLESLIRSADTAMYVAKDEGKRTHR 395

Query: 257 CFS 259
            FS
Sbjct: 396 VFS 398


>gi|193064512|ref|ZP_03045592.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E22]
 gi|193070800|ref|ZP_03051734.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           E110019]
 gi|194428457|ref|ZP_03060997.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B171]
 gi|209918281|ref|YP_002292365.1| hypothetical protein ECSE_1090 [Escherichia coli SE11]
 gi|192927764|gb|EDV82378.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E22]
 gi|192955911|gb|EDV86380.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           E110019]
 gi|194413509|gb|EDX29791.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B171]
 gi|209911540|dbj|BAG76614.1| conserved hypothetical protein [Escherichia coli SE11]
          Length = 476

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 309 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 368

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +         + R+GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 369 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 428

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 429 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 465


>gi|153839271|ref|ZP_01991938.1| ggdef family protein [Vibrio parahaemolyticus AQ3810]
 gi|260903409|ref|ZP_05911804.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|149747206|gb|EDM58194.1| ggdef family protein [Vibrio parahaemolyticus AQ3810]
 gi|308107617|gb|EFO45157.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 445

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 90/169 (53%), Gaps = 26/169 (15%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDK 153
           ++L+  D L+G +N  A  + L     +       LSI++ D+D FK+IND FGH +GD 
Sbjct: 275 AELAHRDALTGAMNRHAVQTWLEQQARQVRWGHSTLSILYMDLDNFKKINDKFGHQMGDD 334

Query: 154 VIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           ++     + V+V  + +       R GGEEF      ++ ++A   A  +RK       N
Sbjct: 335 ILR----EFVMVVASSIAPDDRLVRWGGEEFVVFCPDTNIEQAVKKAEMIRK-------N 383

Query: 210 ISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +++   +H   +T S G+A+    E ++  + RAD+ LY+AK++GRNRV
Sbjct: 384 VANHLWVHGEALTCSIGVAQ-MQNERVTETMARADEVLYLAKRNGRNRV 431


>gi|153828324|ref|ZP_01980991.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|229513617|ref|ZP_04403081.1| GGDEF family protein [Vibrio cholerae TMA 21]
 gi|148876154|gb|EDL74289.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|229349494|gb|EEO14450.1| GGDEF family protein [Vibrio cholerae TMA 21]
          Length = 312

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 83/167 (49%), Gaps = 8/167 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFI--SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           IS     + S+ID L+ L N   F   S   +    L ++ FDID+FKQIND +GHP GD
Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPETLLGLIIFDIDHFKQINDTYGHPAGD 205

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L           R GGEEF              LA  +R+ +E++ + +  
Sbjct: 206 YVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDEMANVIGLAETIRRYVESNTL-MWQ 264

Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  I +T+SAG    A   H      +++ ADQAL  AK+ GRNRV+
Sbjct: 265 GQQIALTLSAGCTMGAMMSHN--WDNLLHTADQALLSAKRLGRNRVI 309


>gi|21242684|ref|NP_642266.1| GGDEF family protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21108156|gb|AAM36802.1| GGDEF family protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 980

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 80/156 (51%), Gaps = 10/156 (6%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN +  +++L             L++V  D+D+FK +ND  GH  GD V+A + 
Sbjct: 815 DELTGLLNRAGILAALREMLLHAEHQGRPLAVVLIDLDHFKLVNDQHGHLAGDAVLAGVG 874

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            ++  +      +GR GGEE  A   G +      L    R I  +  I+   G  +H+T
Sbjct: 875 RRMDTLMRGDDRIGRYGGEELLALLPGLNLDATHRLDALHRGICGDYPID---GGWLHVT 931

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+A     E +  ++ RAD ALY AK+SGRNRV
Sbjct: 932 CSVGVAWFQRGETLEQLLARADAALYRAKRSGRNRV 967


>gi|37675711|ref|NP_936107.1| hypothetical protein VVA0051 [Vibrio vulnificus YJ016]
 gi|37200250|dbj|BAC96077.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 602

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 82/160 (51%), Gaps = 7/160 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           QL   D ++ L N ++  +++      E L +   +ID F++IND+FGHPVGD VI   +
Sbjct: 434 QLRHQDPMTQLENKASLANTVQRELGKEALYLAMINIDNFQRINDSFGHPVGDMVIRKTA 493

Query: 160 DQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
             +   F  P  + + R G EEFA     S   EA    N+L+  I N+++ + +G  + 
Sbjct: 494 QMIRDAFPKPNGLCLARYGSEEFAVLFQSSDAHEAQTQLNELKHTISNTRL-LEAGLPVG 552

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +IS G+ +          I  A++AL  AK  G+NRVV 
Sbjct: 553 YSISVGLTQLA--PSYHETIENAERALQRAKNLGKNRVVT 590


>gi|240137808|ref|YP_002962280.1| putative sensory box-containing diguanylate
           cyclase/phosphodiesterase; permease, PAS/PAC, GGDEF and
           EAL domains [Methylobacterium extorquens AM1]
 gi|240007777|gb|ACS39003.1| putative sensory box-containing diguanylate
           cyclase/phosphodiesterase; permease, PAS/PAC, GGDEF and
           EAL domains [Methylobacterium extorquens AM1]
          Length = 815

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 11/172 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I+ L+  D L+GL N + F    G       S   ++ +++ D+D FK++ND  GH  GD
Sbjct: 376 IAYLATRDPLTGLSNRAVFHDVAGEACTASMSGGPRVHLLYLDLDGFKKVNDTAGHCAGD 435

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++  ++D+L         V RLGG+EFA   L     EA ILA  +  I    +  +  
Sbjct: 436 DLLRQVADRLCASVDANAQVFRLGGDEFAILHLSRESAEAEILAEAV--IASLHRPYLIE 493

Query: 213 GPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF-SDIE 262
           G    I +S GIA        +  ++ +AD ALY AK++GR R  CF +D+E
Sbjct: 494 GMQAEIGVSIGIARAPQDATELQDLMRKADLALYTAKEAGRGRWQCFEADLE 545


>gi|254788398|ref|YP_003075827.1| ggdef family protein [Teredinibacter turnerae T7901]
 gi|237683759|gb|ACR11023.1| ggdef family protein [Teredinibacter turnerae T7901]
          Length = 431

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 8/169 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSA---FISSL--GSYNEKLS-IVFFDIDYFKQINDNF 146
           L I    + +L+  D L+G+LN       I  L   +Y++  + ++  ++D FK IN+ F
Sbjct: 260 LAIEKASLQKLAHKDPLTGILNRRGAEEHIKRLYQNTYSKAFTAVLLLNLDNFKLINEQF 319

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD ++   S  + +   +     R G EEF    +  ++Q+A   A  LR++ E +
Sbjct: 320 GHDKGDAILKAFSALIQMNLESSDIFARWGSEEFLLVCVAENQQDALYRAEKLRQLTERT 379

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             ++S  P  ++T S G+A     E     + RA  AL  AK+SGRNRV
Sbjct: 380 --HLSPAPGFNVTTSIGVATIGGNESFQQALTRASAALQNAKRSGRNRV 426


>gi|227329062|ref|ZP_03833086.1| hypothetical protein PcarcW_17700 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 307

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 7/158 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF-DIDYFKQINDNFGHPVGDKVIAF 157
           RI   S  D L+ L N   FI+ L     K   +F  DID FK IND +GH  GD++++ 
Sbjct: 145 RIQSFS--DELTQLPNRRFFINELKKLEAKTPYLFIIDIDNFKVINDKYGHTKGDEILSK 202

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
               L     + +   R+GGEEFA      ++  A  LA   R++++N+   I      H
Sbjct: 203 FGHILSRFDNSEVVATRIGGEEFAIILYAGTQARAEKLA---REVLKNANKIIIKNMH-H 258

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +++S G  ++  KEP    + R D ALY AK +G+ +V
Sbjct: 259 LSVSIGAGQKQPKEPTEHFMKRVDVALYQAKSTGKGKV 296


>gi|330901226|gb|EGH32645.1| GGDEF domain-containing protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 355

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 15/240 (6%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV---IISIT 77
           S S    +I  S    ++    + +A   L +  L+P  G++   V  + +    I S++
Sbjct: 97  SLSVAVMIILCSTLLVVYTRDYLVVA--VLAWCILSPAQGVDTDSVAAVFMTLFFITSVS 154

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFF 134
           +  ++ +     L+ +    ++  +LS  D L+ +LN  A + +L ++   N     +  
Sbjct: 155 LGSVMNHTYTRTLRTVLSLEHQFRELSLTDDLTAILNRRALMQALDNHVLNNSAGYFLML 214

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID FK IND FGH  GD+ +  ++  L    G+  F GR+GGEEF       SE +   
Sbjct: 215 DIDDFKTINDQFGHDAGDQALRVMAGCLQKTVGSLAF-GRMGGEEFGVILPMCSEDDVRD 273

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
              +L + I  S   ++  P   +T SAG+A+       S ++  AD  LY AK+ G++R
Sbjct: 274 YVLNLLECIRKS---LAVSP---LTCSAGLADIPAAADSSEVLKTADINLYQAKRGGKDR 327


>gi|300310347|ref|YP_003774439.1| GGDEF domain transmembrane protein [Herbaspirillum seropedicae
           SmR1]
 gi|300073132|gb|ADJ62531.1| GGDEF domain transmembrane protein [Herbaspirillum seropedicae
           SmR1]
          Length = 334

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 105/226 (46%), Gaps = 23/226 (10%)

Query: 56  TPFYGLEYILVENLSLVIISITISLLLG----------YISGSILKELFISY--NRISQL 103
            PF+  EY            + I+ +LG           I+G  L E  +     +++ L
Sbjct: 103 APFFQYEYPCHSPNEQRWFMMRIAPVLGAEDFFVISHVVITGRKLAEQRVERLNEKLALL 162

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  D L+GL N           I+    Y + LS++  DID+FK++NDNFGH  GD V+ 
Sbjct: 163 AVTDKLTGLANRMKLDEVLDNEINRADRYGKNLSLILLDIDHFKEVNDNFGHSTGDAVLV 222

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +++ L     +    GR GGEEF         ++AA +A  LR +IEN        P  
Sbjct: 223 RIAEILRANVRSSDLAGRWGGEEFLLILPECDMEDAARMAEKLRLLIENYNFV----PVG 278

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             T S G+A        +T++  AD ALY AK +GRNRV   +++E
Sbjct: 279 RRTCSFGVAAYQAGHDRTTLLTLADLALYRAKNTGRNRVEIAANLE 324


>gi|283851671|ref|ZP_06368950.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio sp. FW1012B]
 gi|283573001|gb|EFC20982.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio sp. FW1012B]
          Length = 444

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 94/175 (53%), Gaps = 15/175 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQIND 144
           E+     ++ + S  D L+ L N   F  +       L    E +++   DID+FK++ND
Sbjct: 272 EMLEYIQKLRETSIRDPLTSLYNRRHFFEAAKDLHGRLTRGEEPMTLAMLDIDHFKKVND 331

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGD+V+  ++  L   F     V RLGGEEF   A G   ++A  + NDLR  IE
Sbjct: 332 TYGHAVGDEVLKHVAHGLGNRFRGHDVVARLGGEEFCVLATGMEGEQALAVFNDLRNSIE 391

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTI---IYRADQALYVAKKSGRNRVV 256
            S+   +   ++ +TIS G+   C K P+ ++   +  AD ALY AK++GRN+VV
Sbjct: 392 RSKAK-AGKTAVGVTISIGL---CDK-PLGSVDAMLAAADAALYKAKRTGRNKVV 441


>gi|262280968|ref|ZP_06058751.1| ggdef domain/eal domain-containing protein [Acinetobacter
           calcoaceticus RUH2202]
 gi|262257868|gb|EEY76603.1| ggdef domain/eal domain-containing protein [Acinetobacter
           calcoaceticus RUH2202]
          Length = 684

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 95/177 (53%), Gaps = 12/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +   ++ LS  D L+ L N           +S     ++K++ ++ D+D FK +ND
Sbjct: 246 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSDHRYKDQKIAFLYIDLDRFKSVND 305

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH +GD+++  ++++L         + R+GG+EF   A  ++  E+ +LA  + ++I+
Sbjct: 306 AFGHHIGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLIAENTNADESVVLAEKVLQLIQ 365

Query: 205 NS-QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            S QI   SG  I+I+ S G+A    H + +  ++  AD A+ ++K+ GRN    FS
Sbjct: 366 ESYQI---SGKEINISASLGVALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTIFS 419


>gi|258626404|ref|ZP_05721251.1| GGDEF family protein [Vibrio mimicus VM603]
 gi|258581456|gb|EEW06358.1| GGDEF family protein [Vibrio mimicus VM603]
          Length = 440

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 20/165 (12%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+G +N       L            + S++F DIDYFKQ+ND +GH +GD +
Sbjct: 272 EMAHRDALTGAINRHGIRDWLQEQARLVRWQLNQFSVLFIDIDYFKQVNDVYGHGIGDDL 331

Query: 155 IAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           +     + V+V  + +       R GGEEF      +   +A  LA+ LR  +EN    +
Sbjct: 332 LR----EFVLVISSEIRESDRLVRWGGEEFVVFCAQTGIDQAVDLADRLRIRVENHSW-L 386

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             G    +T S GIA+    E ++  + RAD+ALY AK+ GRNR+
Sbjct: 387 HGG---ELTCSIGIAQ-MENERVTETVSRADEALYRAKRLGRNRI 427


>gi|239909078|ref|YP_002955820.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239798945|dbj|BAH77934.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 434

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 73/161 (45%), Gaps = 11/161 (6%)

Query: 102 QLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            L+  D L+  LN         A  +    Y    S+   DID+FK IND+ GH  GD V
Sbjct: 267 DLANRDPLTRTLNRRKLGDVLEAETARAARYATPFSLALLDIDHFKHINDSHGHDAGDAV 326

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  L+ ++         + R GGEEF  AA G     AA LA  LR+ + +         
Sbjct: 327 LVELARRITASLRQVDRLARFGGEEFVVAAPGIDLAGAAELAERLRRAVADEPFAGVG-- 384

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              +T S G+A     +    +I RAD ALY AK  GRNRV
Sbjct: 385 --RVTASFGLAAWRPGDKPEDLIKRADAALYRAKDGGRNRV 423


>gi|157158903|ref|YP_001462259.1| diguanylate cyclase [Escherichia coli E24377A]
 gi|157160550|ref|YP_001457868.1| diguanylate cyclase [Escherichia coli HS]
 gi|157066230|gb|ABV05485.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli HS]
 gi|157080933|gb|ABV20641.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           E24377A]
 gi|320200258|gb|EFW74846.1| Sensory box/GGDEF domain protein [Escherichia coli EC4100B]
 gi|323962799|gb|EGB58376.1| GGDEF domain-containing protein [Escherichia coli H489]
          Length = 476

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 309 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 368

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +         + R+GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 369 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 428

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 429 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 465


>gi|153836224|ref|ZP_01988891.1| ggdef family protein [Vibrio parahaemolyticus AQ3810]
 gi|149750499|gb|EDM61244.1| ggdef family protein [Vibrio parahaemolyticus AQ3810]
          Length = 658

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 11/162 (6%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAF 157
           +RID L+  LN +A I ++ S   K        +   D+D FK IND +GHP  D V+  
Sbjct: 483 ARIDSLTCALNRTAIIETIKSQTSKTHQEMRYVLALIDLDNFKAINDTYGHPTRDLVLKH 542

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +   + V      ++GRLGGEEF        E +       L K I   QI       + 
Sbjct: 543 VCQSIRVKLNKGEYIGRLGGEEFVLLLKNVDEIDVPFRVQSLHKTISEKQIKTERNEDLR 602

Query: 218 ITISAGIAERCHKEPISTI--IYR-ADQALYVAKKSGRNRVV 256
           +T  A +A      P++    +Y   DQALY AK++G+N VV
Sbjct: 603 VT--ASLAYLSTSMPLTNFDELYSILDQALYQAKRNGKNAVV 642


>gi|330973807|gb|EGH73873.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 534

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 115/259 (44%), Gaps = 33/259 (12%)

Query: 23  SPHTFMIYFSIFFSIFIATVIFIANIFLFYI--------GLTPFYGLEYILVENLSLVII 74
           SPH    Y       ++ ++  +A  + F +        GL   Y  ++   E    V+ 
Sbjct: 6   SPHMVRKYLYTLLWFYVLSIFLLAIAWEFELESLAMAAMGLP--YDQDFENAERWRFVLT 63

Query: 75  SI---TISLLLGYIS-GSILKELFISYNRI-------SQLSRIDCLSGLLN----HSAFI 119
           S     +S+++ +I    ++++L  SYN +         L+R D LSGLLN    H   +
Sbjct: 64  STGFAVLSMVIPFILLKRLMQQLHSSYNDLLESQALSESLARHDPLSGLLNRRVFHEQLV 123

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGE 178
           + L     + ++   D+D  K IND  GH  GD  I  +++ L     G    V RLGG+
Sbjct: 124 ARLQQPATQTAVFLIDLDKIKLINDTHGHAAGDAAICAVAESLRDATVGWQASVARLGGD 183

Query: 179 EFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAG--IAERCHKEPIST 235
           EF  A  G  S  E A LA ++   I  S + +   P + ++ + G  IA     +P   
Sbjct: 184 EFGLAVSGDFSHAELAPLAENILAKIAASSVGL---PRVALSATLGIAIAPMDGSDP-DL 239

Query: 236 IIYRADQALYVAKKSGRNR 254
           ++ RAD A+Y  K  GR R
Sbjct: 240 LLQRADSAMYRGKAGGRAR 258


>gi|326388704|ref|ZP_08210297.1| diguanylate cyclase with PAS/PAC sensor [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206955|gb|EGD57779.1| diguanylate cyclase with PAS/PAC sensor [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 599

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 8/174 (4%)

Query: 89  ILKELFISYNR---ISQLSRIDCLSGLLNHSAFISSLG----SYNEKLSIVFFDIDYFKQ 141
           I++++ +   R   IS+ +  D L+G+LN + F   L     +  E  S+   D+D FK 
Sbjct: 423 IMRDITVRKAREVAISKRAETDDLTGVLNRAGFHQRLNLAIETSEEPFSLALIDVDRFKS 482

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GHPVGD  +  +  ++         VGRLGG+EF A        +A  +   +  
Sbjct: 483 INDTYGHPVGDAALIEIVRRMKTGTRKGDVVGRLGGDEF-AILFRCEMAKAETICKRITG 541

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++    I+ +    +  +IS G+A+         ++  AD ALY AK SGRN V
Sbjct: 542 LVSTDPIHANDNVLLLTSISCGVAQFAPGMSREQLVDAADLALYQAKDSGRNGV 595


>gi|323524509|ref|YP_004226662.1| diguanylate cyclase [Burkholderia sp. CCGE1001]
 gi|323381511|gb|ADX53602.1| diguanylate cyclase [Burkholderia sp. CCGE1001]
          Length = 509

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 100/212 (47%), Gaps = 17/212 (8%)

Query: 63  YILVENLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSA 117
           Y+     + +I S+  +L L  I+ ++L     +    + + +  L+R D L+G+ N  A
Sbjct: 282 YVGWRRRAWIIGSLIAALDLTLIALAVLFAQQMRRRLAAEDELRMLARTDGLTGVDNRRA 341

Query: 118 FISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           F  ++ +       +   LS++  D+D FK  ND +GH  GD  +  ++  +      P 
Sbjct: 342 FEQAVENEWRRAQRHGGPLSMLLIDVDSFKGFNDLYGHSAGDDALITVAHSIAGNVQRPG 401

Query: 171 -FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               R GGEEFA     + E  A  +A  +R  +E   I   +     +T+S G+A    
Sbjct: 402 DTAARYGGEEFAVLLPDTDEAGATSIAEKIRAAVEALAIRHVASSHHVLTVSIGVAT-MQ 460

Query: 230 KEPIST---IIYRADQALYVAKKSGRNRVVCF 258
            E  ST   ++  ADQALY AK +GRNRV  +
Sbjct: 461 GEAFSTSRGLVEAADQALYAAKDAGRNRVFSY 492


>gi|256018713|ref|ZP_05432578.1| putative diguanylate cyclase [Shigella sp. D9]
 gi|323181285|gb|EFZ66778.1| diguanylate cyclase domain protein [Escherichia coli 1357]
          Length = 264

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 15/161 (9%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 97  DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 156

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216
           +         + R+GGEEF         + A  LA  +R+ +E     N +  I     +
Sbjct: 157 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQ--KV 214

Query: 217 HITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
            I+I A + +     P    IYR AD ALY AK++GRN+VV
Sbjct: 215 TISIGAVVTQENALNPNE--IYRLADNALYEAKETGRNKVV 253


>gi|229521336|ref|ZP_04410755.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
 gi|229341434|gb|EEO06437.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
          Length = 372

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 16/180 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L+    ++  LS  D L+GL N    +  L           +    V  DID FK +N
Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDSQQPFVCVMIDIDGFKAVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH VGDKV+  +++ L   F +   V RLGG+EF      +       +A  + + I
Sbjct: 253 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETDTAGGVYIAEQVCRAI 312

Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   I++ +      ++S G+A      + H E    ++  ADQA+Y+AK SG+NRV  F
Sbjct: 313 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHE----LLRAADQAVYLAKNSGKNRVCAF 368


>gi|226306989|ref|YP_002766949.1| hypothetical protein RER_35020 [Rhodococcus erythropolis PR4]
 gi|226186106|dbj|BAH34210.1| hypothetical membrane protein [Rhodococcus erythropolis PR4]
          Length = 471

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 113/250 (45%), Gaps = 25/250 (10%)

Query: 28  MIYFSIFFSIFIATVIFIANI-FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS 86
           ++  ++  ++F+ +V+  A+  +   +      GL     E +S V  S+ I L L  ++
Sbjct: 226 LVTAALLTNVFVTSVLTAASTAWTLVLTADGHLGLSS---EGVSPVSASVQIGLSLLAVA 282

Query: 87  ----GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN----------EKLSIV 132
                 ++ E   +   ++Q    D L+G L    F+   GS              +S++
Sbjct: 283 PIAVACVILERRRALEALTQAVTHDDLTGALRRDEFLRRGGSVTGAPDPRRHSGRPVSVL 342

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK +NDN GH  GD  +   +DQ+           RLGGEEF     G   + A
Sbjct: 343 MMDLDHFKMVNDNLGHRAGDTALVSFADQVRRNLDDKHLFARLGGEEFVVLMAGVDLEGA 402

Query: 193 AILANDLRKI-IENSQINISS-GPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKK 249
              A  +R+   ENS   +   GP    T+S G+A   H +  ++ ++  AD+ALY AKK
Sbjct: 403 TETAEMIRRAQAENSSAVLGELGP----TVSIGVACSPHGDADLTQLVDCADEALYRAKK 458

Query: 250 SGRNRVVCFS 259
             RNR V  +
Sbjct: 459 LDRNRTVALT 468


>gi|220905630|ref|YP_002480942.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869929|gb|ACL50264.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 554

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 96/199 (48%), Gaps = 22/199 (11%)

Query: 81  LLGYISGSILK-------------ELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L G ++G ILK             +L  +Y  + +++  D L+GLLN  A    L     
Sbjct: 350 LTGMVNGFILKLKDDETALREEKNKLDDAYKELERVAYYDFLTGLLNRRAMYERLEKEFS 409

Query: 123 GSYNEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            +  E L   +V  DID+FK +ND +GH  GD V+  +++             R GGEEF
Sbjct: 410 RAQREGLQFCLVLADIDHFKVVNDTYGHDAGDVVLQSIAEIFQNNIRQEDCASRWGGEEF 469

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
              A+    ++   LA  LRK +E++ I I +   I++TI+ G+ E    +  ST+I  A
Sbjct: 470 LILAISCGLEDGLSLAEKLRKAVEDTPIRIGAA-IINVTITLGVVEYTKGKSFSTLIKEA 528

Query: 241 DQALYVAKKSGRNRVVCFS 259
           D  LY  K+  RN V+  S
Sbjct: 529 DFYLYEGKRQ-RNCVMSSS 546


>gi|187935634|ref|YP_001884962.1| ggdef domain protein [Clostridium botulinum B str. Eklund 17B]
 gi|187723787|gb|ACD25008.1| ggdef domain protein [Clostridium botulinum B str. Eklund 17B]
          Length = 1755

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 11/165 (6%)

Query: 104  SRIDCLSGLLNHS----AF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
            S +D L+G+ N      AF   I    S     S++ FDID FK +ND +GH  GD+V+ 
Sbjct: 1419 STLDKLTGVYNRKYLEKAFCDLIDDSYSKGRLFSLIIFDIDDFKGVNDRYGHQTGDEVLI 1478

Query: 157  FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             L+ ++           R GGEEF       +E EA + +  +R  ++ ++I    G   
Sbjct: 1479 KLTQEVKNCLSKEDVFVRYGGEEFIILLPDKNEDEAYLFSEKIRNKVDCAKI---LGEKR 1535

Query: 217  HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +TIS GI+    H      +I  ADQALY +K  G+N+   ++D
Sbjct: 1536 KVTISLGISVYLKHSSNSEDLIKMADQALYTSKAQGKNKTTIWND 1580


>gi|169797220|ref|YP_001715013.1| hypothetical protein ABAYE3236 [Acinetobacter baumannii AYE]
 gi|213155986|ref|YP_002318031.1| ggdef domain/eal domain protein [Acinetobacter baumannii AB0057]
 gi|215484661|ref|YP_002326896.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|239500742|ref|ZP_04660052.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii
           AB900]
 gi|301512846|ref|ZP_07238083.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii
           AB058]
 gi|301594190|ref|ZP_07239198.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii
           AB059]
 gi|332851275|ref|ZP_08433348.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332866144|ref|ZP_08436859.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
 gi|169150147|emb|CAM88041.1| conserved hypothetical protein; putative membrane protein
           [Acinetobacter baumannii AYE]
 gi|193076343|gb|ABO10999.2| putative membrane protein [Acinetobacter baumannii ATCC 17978]
 gi|213055146|gb|ACJ40048.1| ggdef domain/eal domain protein [Acinetobacter baumannii AB0057]
 gi|213988225|gb|ACJ58524.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|332730155|gb|EGJ61482.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332734785|gb|EGJ65879.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
          Length = 684

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 12/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +   ++ LS  D L+ L N           +S     ++K++ ++ D+D FK +ND
Sbjct: 246 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSDHRYKDQKIAFLYIDLDRFKSVND 305

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH +GD+++  ++++L         + R+GG+EF   A  +  +EA  LA  +  +I+
Sbjct: 306 AFGHHIGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLIAENTDTEEAMQLAEKVLHLIQ 365

Query: 205 NS-QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +S QI   SG  I+I+ S GIA    H + +  ++  AD A+ ++K+ GRN    FS
Sbjct: 366 DSYQI---SGKEINISASLGIALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTVFS 419


>gi|170020575|ref|YP_001725529.1| diguanylate cyclase [Escherichia coli ATCC 8739]
 gi|169755503|gb|ACA78202.1| diguanylate cyclase [Escherichia coli ATCC 8739]
          Length = 452

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +         + R+GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 404

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 405 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 441


>gi|157960094|ref|YP_001500128.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157845094|gb|ABV85593.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
          Length = 456

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 124/276 (44%), Gaps = 39/276 (14%)

Query: 18  NLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG----------------- 60
            LE F     M+   I F + IA ++  A +      L+PF G                 
Sbjct: 177 GLEQFYGQMSMLTAFIGFVLAIAALMMTAKVGGVNAILSPFIGGKIARRQTAAGYFVPAI 236

Query: 61  LEYILVENLS----------LVIISITISLLLGYISGSILKELFISYNRISQLSRI---- 106
           L Y+L+++L           +V I   + L++ Y S    +++ +   ++ QL  +    
Sbjct: 237 LGYLLIKSLCAIDGELCGIFVVTICWFVILMISY-SALFQEKMDLERRQMEQLLTLAAMN 295

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F       ++ +     +  ++  D+D+FK+IND  GH +GD+V+  LS
Sbjct: 296 DQLTGLANRRKFHEFAQEELNRVQRNKSQFWVLVMDVDFFKKINDTAGHDMGDQVLIELS 355

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R+GGEEF+     +++Q A  +A  +R  IE+ +I   +     IT
Sbjct: 356 KVLKNSVRAVDLVSRMGGEEFSIILSDTTKQGAERVAESIRSSIESIKIKGWTDIYGPIT 415

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G A     + +   +  AD ALY AK+ GRN+V
Sbjct: 416 ASIGGATSDGADKLENTLKIADSALYQAKQRGRNQV 451


>gi|172063342|ref|YP_001810993.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           MC40-6]
 gi|171995859|gb|ACB66777.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           MC40-6]
          Length = 516

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 11/163 (6%)

Query: 100 ISQLSRIDCLSGLLN----HSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVG 151
           I  L+R D L+GL N    H+     L       +  L++++ D+D FK IND FGH  G
Sbjct: 338 IRHLARHDALTGLPNRHELHAELRRRLAHRPRVPSPALAVMYLDLDGFKAINDRFGHQAG 397

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++++L           R+GG+EF  A   ++ Q  +ILA  + + I ++   +S
Sbjct: 398 DEVLTQVAERLGKTLPPGELAARIGGDEFVVAIDDTTMQACSILAARIIRQI-SAPYTLS 456

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
            G ++ + IS GIA +  H  P   +I +AD ALY AK  G+ 
Sbjct: 457 IGATVSLGISIGIALDDGHGSP-DELIRQADSALYDAKSGGKG 498


>gi|152985233|ref|YP_001345645.1| hypothetical protein PSPA7_0249 [Pseudomonas aeruginosa PA7]
 gi|150960391|gb|ABR82416.1| hypothetical protein PSPA7_0249 [Pseudomonas aeruginosa PA7]
          Length = 275

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N    +  L   NE+         +   D+D+FKQ+ND +GH  GD+V+  ++
Sbjct: 103 DPLTGLPNRRMLLERLREENERSQRHGQSYVLAMLDVDFFKQVNDTWGHDSGDRVLVEIA 162

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +          GR GGEEF      +  Q+A  +   +R  +    + + +  ++ +T
Sbjct: 163 RAMESELREYDLCGRWGGEEFLLLLPQTRLQDAGPVLERVRDSVRTLAVRVGT-EALSVT 221

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S G+ E    E  S  + RAD AL  AK+SGR++ V
Sbjct: 222 ASVGVTEHRIGETYSQTVNRADAALLDAKRSGRDKCV 258


>gi|89094637|ref|ZP_01167574.1| PAS:GGDEF domain protein [Oceanospirillum sp. MED92]
 gi|89081107|gb|EAR60342.1| PAS:GGDEF domain protein [Oceanospirillum sp. MED92]
          Length = 421

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 107/223 (47%), Gaps = 33/223 (14%)

Query: 69  LSLVIISITISLLLGYI-------SGSILKELFISYNRISQ-------LSRIDCLSGLLN 114
           L L++   T++L+ GY            + +L +++ RIS+       L+  D L+GL N
Sbjct: 182 LMLMLAICTMTLITGYAIWRFTSNRSKYINKLAVAHQRISEQNAQLKELAHTDQLTGLPN 241

Query: 115 HSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
                      +S +   +  LS+ F D+D+FK IND FGH VGDKV++  +  +     
Sbjct: 242 RKMLEAITNQALSRVQRKHSVLSLTFIDLDFFKPINDEFGHNVGDKVLSNFTKAITTQLR 301

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS----SGPS-IHITISA 222
               + RL G+EF    L   E+    L   L  II   Q+ +     S PS IHI  SA
Sbjct: 302 DGDVLARLAGDEF---ILLIQEESEDALKEALDNIIARIQLRLEEPIISAPSEIHIRCSA 358

Query: 223 GIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           G A    ++ I    +++ ADQA+Y +K  GR +  C+ + E+
Sbjct: 359 GTA-FAPRDAIEFEMLLHCADQAMYESKNRGRGQ-HCYYEPES 399


>gi|332995083|gb|AEF05138.1| diguanylate cyclase [Alteromonas sp. SN2]
          Length = 634

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 98/199 (49%), Gaps = 16/199 (8%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------ 120
           +N+ LV + +  +LLL ++        + +  ++  LS  D L+GL N   F        
Sbjct: 436 KNMMLVGVVVIFALLLIFVVFQ-----YKNSRKLLALSIRDDLTGLHNRRYFFDYFEHNL 490

Query: 121 -SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
             L   +  L+++ FDID FK INDN GH VGD+VI  ++        T   + R+GG+E
Sbjct: 491 VKLNPSHVGLALISFDIDNFKHINDNLGHHVGDEVIKTVAHTAANTLRTNDVIARIGGDE 550

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE----PIST 235
           F  A   ++  +A  +A  + + I + +     G    +T S G+A     +     + +
Sbjct: 551 FIIALPRTTLLQAKEIAKRILENIRSHRFTTKEGADFSVTASLGVAYHHQNKLIALDVKS 610

Query: 236 IIYRADQALYVAKKSGRNR 254
           ++  AD ALY +K++G+NR
Sbjct: 611 MMESADTALYQSKRAGKNR 629


>gi|330448353|ref|ZP_08312001.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492544|dbj|GAA06498.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 350

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRI---DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
           Y+ I Q+ R    D L+GLLN   F+       S    Y   +S++  DID  ++IND F
Sbjct: 179 YDAIKQVKRTTTHDYLTGLLNREGFVPLYLTESSRCQRYRRDISMLLLDIDNLREINDRF 238

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           G   GDK I  L+  L    G    + RL  +EF      +  Q+A  +A  LR  +   
Sbjct: 239 GLDAGDKTIMMLAKCLNEHCGDKAKISRLSCQEFCILLPDADIQKAEFMAIQLRNEVAKW 298

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + + +G  I+ITIS GI    +++     I +A+ AL  AK+ G N++
Sbjct: 299 SLELETGHRINITISVGITAVEYQDFRYDYI-KAESALMRAKRWGYNQI 346


>gi|320352178|ref|YP_004193517.1| response regulator receiver modulated diguanylate cyclase
           [Desulfobulbus propionicus DSM 2032]
 gi|320120680|gb|ADW16226.1| response regulator receiver modulated diguanylate cyclase
           [Desulfobulbus propionicus DSM 2032]
          Length = 437

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 76/158 (48%), Gaps = 10/158 (6%)

Query: 107 DCLSGLLN----HSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      AF  +          +S +FFD+D+FKQ+ND  GH  GD V+  + 
Sbjct: 276 DALTGLRNKRYFQEAFEEAFARAQRIGIDVSCLFFDLDHFKQVNDTCGHGFGDYVLKTVG 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +           R GGEEF  A   +   +A  +A  +R++I         G    +T
Sbjct: 336 ALIKETVRRGDLAARFGGEEFVVALPNTDLGQAKCVAEKIRRLIAAHPFR-DQGLQWRVT 394

Query: 220 ISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255
           +S G+A      P S   ++  ADQALY AK++GR+RV
Sbjct: 395 VSIGVASLLSARPSSACGLLQLADQALYRAKRAGRDRV 432


>gi|229529548|ref|ZP_04418938.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229333322|gb|EEN98808.1| GGDEF family protein [Vibrio cholerae 12129(1)]
          Length = 527

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%)

Query: 76  ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127
           + ISLLL YI    L+E      +   R ++L  +   D L+ + N   F   L    +E
Sbjct: 315 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 374

Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           K S  ++ FDID FKQIND++GH  GD  +  + D +           R GG+EFA  + 
Sbjct: 375 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 434

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
            + E         +RK++E   + +++   + +TIS G +  C + EP   I+   D  L
Sbjct: 435 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 492

Query: 245 YVAKKSGRNRV 255
           Y++K  GRNRV
Sbjct: 493 YLSKSKGRNRV 503


>gi|192360288|ref|YP_001982075.1| hypothetical protein CJA_1595 [Cellvibrio japonicus Ueda107]
 gi|190686453|gb|ACE84131.1| putative membrane protein [Cellvibrio japonicus Ueda107]
          Length = 380

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 81/157 (51%), Gaps = 9/157 (5%)

Query: 107 DCLSGLLNHSAFISSLGSY--NEKLSIVFF---DIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ LLN   F  +   +  ++  S  F    DID+FK +NDN+GH  GDKV+  +S  
Sbjct: 227 DSLTHLLNRRGFFEAAKDFMGSDATSRYFLLTCDIDHFKNVNDNWGHLAGDKVLQAVSKA 286

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           ++        V R GGEEF          +A  +A  +R+ IEN+     S   I IT S
Sbjct: 287 IIKNVRKGDLVARFGGEEFVIFLRSIDINDARKIAERIREEIENTTY---SAIPICITAS 343

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            G+ +    + + + I RAD  LY AK++GRN+ VC+
Sbjct: 344 FGLVDIVPNQDLVSAIDRADALLYNAKQNGRNQ-VCW 379


>gi|297583734|ref|YP_003699514.1| GAF sensor-containing diguanylate cyclase [Bacillus
           selenitireducens MLS10]
 gi|297142191|gb|ADH98948.1| diguanylate cyclase with GAF sensor [Bacillus selenitireducens
           MLS10]
          Length = 580

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 95/191 (49%), Gaps = 21/191 (10%)

Query: 89  ILKELFISYNRISQLSR-----IDC-LSGLLNHSAFISSLGSY----NEKLSIVFFDIDY 138
           +L  L +S N    L R     + C L+ L N+  F  +L  +    ++  +++  D+D+
Sbjct: 376 LLNHLTVSINNARHLERAQKESMQCALTKLHNYRFFERTLQEHYEGNDDDFAVILLDLDH 435

Query: 139 FKQINDNFGHPVGDKVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           FK +ND FGH  G++V+  ++  L   V  G    V R GGEEF      ++ ++A   A
Sbjct: 436 FKSVNDRFGHSAGNQVLHQVARTLESAVTSGKAYTVARYGGEEFVILLDQTTAEDATDQA 495

Query: 197 NDLRKIIENSQINI-----SSGPSIHITISAGI---AERCHKEPISTIIYRADQALYV-A 247
             +R+ +E +  ++       G +  +T++A I   A R   E    I+  AD+A+Y  A
Sbjct: 496 EQIRQTLEETVFHVDDDLQQGGQTKALTLTASIGVAARRADDEDPLGIVRNADRAMYTGA 555

Query: 248 KKSGRNRVVCF 258
           K +GRN+V  +
Sbjct: 556 KNNGRNKVAVY 566


>gi|85859612|ref|YP_461814.1| response regulator [Syntrophus aciditrophicus SB]
 gi|85722703|gb|ABC77646.1| response regulator protein with GGDEF domain [Syntrophus
           aciditrophicus SB]
          Length = 355

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 9/185 (4%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132
           +L+ YI+     ++    N+I  +S  D L+G+ N                 YN  LS++
Sbjct: 168 VLVAYITTMFASDIRYGLNKIKLMSETDELTGIYNRRGLAIIADRLFGHTVRYNRPLSLL 227

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D D  K++ND++GH  GD+++  L + +         + R GG+EF      +    A
Sbjct: 228 AIDSDNMKRVNDDYGHKAGDQLLVTLVNTIQAQLRHSDILARQGGDEFVVLLPETPSTGA 287

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSG 251
             +A  +RK +EN+ + +  G  +  T+S G+A        +  ++ +AD  +Y AK  G
Sbjct: 288 LDVAERIRKAVENTPL-VLDGKIVRTTVSIGVASYPSEGHSLDVLLAQADFKMYEAKLGG 346

Query: 252 RNRVV 256
           RN+VV
Sbjct: 347 RNKVV 351


>gi|77463595|ref|YP_353099.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides 2.4.1]
 gi|77388013|gb|ABA79198.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides 2.4.1]
          Length = 833

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 59/171 (34%), Positives = 87/171 (50%), Gaps = 12/171 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  ++R D L+GL N   F       ++SL      ++++  D+D FK +ND  GHPVG
Sbjct: 393 QVFHMARHDMLTGLPNRHYFGDCYQEAVASLAP-ERSVAVLMLDLDGFKTVNDTRGHPVG 451

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINI 210
           D+V+  ++++L     +   V RLGG+EFA       SEQEA  LA   R I   S+   
Sbjct: 452 DQVLCEVANRLRTSVRSTDTVARLGGDEFAVIQTPIRSEQEACDLAR--RLIAAISKPFD 509

Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             G    +  S GIA  R H +    I+  AD ALY AK++GR     F +
Sbjct: 510 LEGAVPEVGASVGIAFARGHGDSAEEIMRYADVALYAAKQAGRGTFRVFDE 560


>gi|27376066|ref|NP_767595.1| hypothetical protein bll0955 [Bradyrhizobium japonicum USDA 110]
 gi|27349205|dbj|BAC46220.1| bll0955 [Bradyrhizobium japonicum USDA 110]
          Length = 955

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 56/162 (34%), Positives = 84/162 (51%), Gaps = 10/162 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-YNE------KLSIVFFDIDYFKQINDNFGHPVG 151
           R++ ++R D L+ L N + F   +G   N+       ++++ FD+D FK +ND  GH  G
Sbjct: 524 RVAHMARHDSLTDLPNRTLFREKMGEGLNQVAIAGGAMAVLCFDLDNFKTVNDRLGHAAG 583

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++ +++ +L    G    V RLGG+EFA    G   Q A  LA  L +II +     S
Sbjct: 584 DRLLRWVAARLKENVGEHDTVARLGGDEFAVLQRGPQPQSAEKLARRLVEIIGHPPPLES 643

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252
              SIH+ +S GIA    H      ++  AD ALY AK  GR
Sbjct: 644 Q--SIHVGVSVGIAIAPDHGLDADELMKCADLALYQAKARGR 683


>gi|309701300|emb|CBJ00601.1| predicted diguanylate cyclase [Escherichia coli ETEC H10407]
          Length = 449

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +         + R+GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 404

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 405 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 441


>gi|296101507|ref|YP_003611653.1| diguanylate cyclase AdrA [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295055966|gb|ADF60704.1| diguanylate cyclase AdrA [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 367

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 25/202 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           L+L ++ I   +L  ++S      L  +  ++  +S  D ++G+ N   + + L    EK
Sbjct: 172 LTLPVLMI-YPILFAWVSHQTAIRLAENKRKLELMSTRDGMTGVYNRRHWETLLRMEYEK 230

Query: 129 -------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                   +I+  DID+FK IND +GH VGD+ I  ++ QL +      ++GR GG+EFA
Sbjct: 231 CRRDHCQTTILLIDIDHFKSINDTWGHDVGDEAIIAITRQLQMTLRAGDYIGRFGGDEFA 290

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E   ++++   P+  + IS G+A      P  T    Y
Sbjct: 291 IIMSGTP-AESAIAA--MSRVHERLKKLSLPCAPNERLRISVGVA------PWGTQFAHY 341

Query: 239 R-----ADQALYVAKKSGRNRV 255
           R     AD ALY AK +GR R 
Sbjct: 342 REWLKAADIALYKAKNAGRGRT 363


>gi|288959268|ref|YP_003449609.1| two-component response regulator, modulated diguanylate cyclase
           [Azospirillum sp. B510]
 gi|288911576|dbj|BAI73065.1| two-component response regulator, modulated diguanylate cyclase
           [Azospirillum sp. B510]
          Length = 310

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 17/170 (10%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  LS +D L+G+ N   F  +L       G  +  LS+V  D+D+FK  ND++GH  GD
Sbjct: 131 LRSLSFLDGLTGIANRRRFDDALRREWRRCGRSHLPLSLVILDVDHFKAYNDHYGHQSGD 190

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           + +  ++D L      P   V R GGEEF      +  + A  LA   R  + + +I  +
Sbjct: 191 ECLRIVADVLSERARRPSDLVARYGGEEFVCLLPETDGEGAVRLAEGFRAGVADRRIPHA 250

Query: 212 SGP-SIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             P + ++TIS G+A     +    E ++ I   ADQ LY AK++GRNRV
Sbjct: 251 QSPVAPYVTISLGVATVIPSDEGGPERLAEI---ADQLLYRAKRAGRNRV 297


>gi|194438098|ref|ZP_03070191.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 101-1]
 gi|194423034|gb|EDX39028.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 101-1]
          Length = 476

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 309 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 368

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +         + R+GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 369 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 428

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 429 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 465


>gi|148265332|ref|YP_001232038.1| diguanylate cyclase [Geobacter uraniireducens Rf4]
 gi|146398832|gb|ABQ27465.1| diguanylate cyclase [Geobacter uraniireducens Rf4]
          Length = 603

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 85/174 (48%), Gaps = 17/174 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-----------SIVFFDIDYFKQINDNF 146
           N + + S  D L+GL N       L  Y EKL            ++  D+DYFKQ+ND +
Sbjct: 426 NTLRESSLKDPLTGLHNRRF----LQEYTEKLVAGAKRRRTLVGLIMCDLDYFKQVNDAY 481

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD V+   +  +         V R GGEEF          +A  +A  +R  ++N+
Sbjct: 482 GHNVGDIVLRETASIIRTSVREADIVVRFGGEEFLVVLFDIGAGDALNVAEKIRVNVQNA 541

Query: 207 QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +I I  G  I  TIS G++E     E     I  AD ALY AK++GRN+V+ F+
Sbjct: 542 RIKIPEG-VIQKTISLGVSEFPADSETFWHSIKYADVALYKAKEAGRNKVMRFT 594


>gi|126173611|ref|YP_001049760.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|125996816|gb|ABN60891.1| diguanylate cyclase [Shewanella baltica OS155]
          Length = 518

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 78/163 (47%), Gaps = 8/163 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +L+ +D L+ L N +A    +         +   L +   DID+FK IND+FGH  GDK
Sbjct: 354 QKLNLLDSLTQLPNRAALEERMELEYRNYQRHKSPLWVAVADIDHFKTINDSFGHSTGDK 413

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  ++  L        FV R GGEEF       +  + A L N +R+ ++N      + 
Sbjct: 414 TLQVIAMALKNSLRDTEFVARYGGEEFVLLLPDVAPADIAQLLNRVREKVKNIPFKFKNQ 473

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I +T+S G A+    E I     RAD ALY AK   R+RVV
Sbjct: 474 -RITVTVSIGAAQVMGSELIHETFERADAALYKAKHESRDRVV 515


>gi|332874050|ref|ZP_08441985.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6014059]
 gi|322506769|gb|ADX02223.1| EAL domain-containing protein [Acinetobacter baumannii 1656-2]
 gi|323516639|gb|ADX91020.1| EAL domain-containing protein [Acinetobacter baumannii TCDC-AB0715]
 gi|332737791|gb|EGJ68683.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6014059]
          Length = 684

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 12/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +   ++ LS  D L+ L N           +S     ++K++ ++ D+D FK +ND
Sbjct: 246 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSDHRYKDQKIAFLYIDLDRFKSVND 305

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH +GD+++  ++++L         + R+GG+EF   A  +  +EA  LA  +  +I+
Sbjct: 306 AFGHHIGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLIAENTDTEEAMQLAEKVLHLIQ 365

Query: 205 NS-QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +S QI   SG  I+I+ S GIA    H + +  ++  AD A+ ++K+ GRN    FS
Sbjct: 366 DSYQI---SGKEINISASLGIALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTVFS 419


>gi|293401537|ref|ZP_06645680.1| putative diguanylate cyclase (GGDEF) domain protein
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305175|gb|EFE46421.1| putative diguanylate cyclase (GGDEF) domain protein
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 829

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 8/158 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS--SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVI 155
           + + S +D L+ + N +AF     L    +K    F   DIDYFK++ND FGH +GD+V+
Sbjct: 670 LEKKSMMDALTSVYNTAAFKKKIQLELVRDKGMYAFGVLDIDYFKEVNDEFGHFIGDQVL 729

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +D +   FG    +GRLGG+EFA   +   ++ A  +AN   ++ +  Q  I   P+
Sbjct: 730 IHCADVMQKAFGEKALIGRLGGDEFAVFLMAPQDENA--VANGCARLQKALQTTIEGLPN 787

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             IT+S G          + +  +AD+ LY  K +GRN
Sbjct: 788 --ITLSMGFVMTKDVCDYNILYQKADKVLYEVKAAGRN 823


>gi|260683836|ref|YP_003215121.1| putative signaling protein [Clostridium difficile CD196]
 gi|260687496|ref|YP_003218630.1| putative signaling protein [Clostridium difficile R20291]
 gi|260209999|emb|CBA64027.1| putative signaling protein [Clostridium difficile CD196]
 gi|260213513|emb|CBE05232.1| putative signaling protein [Clostridium difficile R20291]
          Length = 408

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 110/245 (44%), Gaps = 30/245 (12%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK-ELFIS 96
           F  +VI     FLF     P  G++ I     S ++ +  I+ L  ++S  + +  +F  
Sbjct: 164 FGESVIVFGGCFLFLNLFLP--GIQTIPGNEFSNIVNTFFITSLAIFVSTMLYRNRVFTY 221

Query: 97  YNRI---SQLSRIDCLSGLLNHSAFISSLGSYN-------------------EKLSIVFF 134
           Y+++    Q   I  ++ LLN       L   N                   E ++ +  
Sbjct: 222 YDKLLISQQYEEISHINNLLNDKVMTDDLTKMNNRRYLEDILQKKLISHANQEPITGMMI 281

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEA 192
           DIDYFKQ NDN+GH  GD  +  ++ ++++ F +       R GGEEF        E +A
Sbjct: 282 DIDYFKQFNDNYGHQKGDYCLQNIA-KVILDFTSSENEHAIRYGGEEFFICIFNCDETDA 340

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKS 250
            + +  LRKIIE+        P   +T+S G+  +  ++ I+    I   D+ALY AK+ 
Sbjct: 341 KLKSECLRKIIESCNFERDDVPLKCVTVSIGVYTKKIEKAITLNEFISNCDKALYTAKEQ 400

Query: 251 GRNRV 255
           GRN V
Sbjct: 401 GRNCV 405


>gi|281412997|ref|YP_003347076.1| diguanylate cyclase with PAS/PAC sensor [Thermotoga naphthophila
           RKU-10]
 gi|281374100|gb|ADA67662.1| diguanylate cyclase with PAS/PAC sensor [Thermotoga naphthophila
           RKU-10]
          Length = 643

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 15/170 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
            RI  L+  D L+G+ N  AF S L         Y+ KLS VF D+D FK+IND+ GH V
Sbjct: 477 ERILWLAERDSLTGVYNREAFESRLAYLINLSKRYSRKLSFVFIDLDDFKRINDSKGHLV 536

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+    ++L  +      VGRLGG+EF      +    A IL   +++I E+ + ++
Sbjct: 537 GDRVLKEFVNRLTSLLRKSDVVGRLGGDEFGIILPETDRTGAEIL---MKRIEEHFRESV 593

Query: 211 S-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYV---AKKSGRNRV 255
              G    +  S GI+      E +  ++  AD+ +Y+   +KK GR  V
Sbjct: 594 PVDGELFSVNFSYGISVFPEDGESVEELLKVADERMYMNKFSKKRGRENV 643


>gi|226365224|ref|YP_002783007.1| hypothetical protein ROP_58150 [Rhodococcus opacus B4]
 gi|226243714|dbj|BAH54062.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 614

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 14/190 (7%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIV 132
           I+ LL  +   I+ E  + Y+     +  D L+GL N  A    L      S    ++I+
Sbjct: 163 IAALLAQVQARIVVEEQLRYS-----ADHDSLTGLSNRRALYHHLDTRLASSEPGPVAIL 217

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQE 191
           F D+D  K +ND FGH  GD  I+ ++D+L         V RLGG+EF     GS   +E
Sbjct: 218 FLDLDRLKPLNDFFGHGAGDGFISTIADRLRSTSDADDLVSRLGGDEFVLVLGGSVGLEE 277

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKS 250
           A + A  +R ++   ++ +     +  ++S G+A  C  K   S+++ +ADQA+ VAK  
Sbjct: 278 AEVRAQHIRDVV-TERVRLGR-EVVSRSVSIGVAAGCPGKATTSSLLSQADQAVMVAKTK 335

Query: 251 GRNRVVCFSD 260
           G N +  F+D
Sbjct: 336 GGNAISVFTD 345


>gi|254503088|ref|ZP_05115239.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
 gi|222439159|gb|EEE45838.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
          Length = 301

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 85/156 (54%), Gaps = 6/156 (3%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFF----DIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+G+ N     +   + + + S  +F    DID+FK +ND +GH +GD+V+  ++  +
Sbjct: 143 DSLTGIYNRRYLEAEFAARHSRPSPKYFLALLDIDHFKNVNDTYGHIIGDQVLKLVATAI 202

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSI-HITI 220
             +  +   + R GGEEFA     + E E A +   +R  + ++  +N   G +I  +T+
Sbjct: 203 KSLIRSQDVLCRYGGEEFAILFDSADETECADVVERVRLGVTKHKLVNRKQGHTIGSVTL 262

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           SAG+A     +   T + R D+ LY AK++GR+R+V
Sbjct: 263 SAGLALVEPDDDFDTALERVDRLLYKAKQAGRDRLV 298


>gi|217974144|ref|YP_002358895.1| diguanylate cyclase [Shewanella baltica OS223]
 gi|217499279|gb|ACK47472.1| diguanylate cyclase [Shewanella baltica OS223]
          Length = 518

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 78/163 (47%), Gaps = 8/163 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +L+ +D L+ L N +A    +         +   L +   DID+FK IND+FGH  GDK
Sbjct: 354 QKLNLLDSLTQLPNRAALEERMELEYRNYQRHKSPLWVAVADIDHFKTINDSFGHSTGDK 413

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  ++  L        FV R GGEEF       +  + A L N +R+ ++N      + 
Sbjct: 414 TLQVIAMALKNSLRDTEFVARYGGEEFVLLLPDVAPADIAQLLNRVREKVKNIPFKFKNQ 473

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I +T+S G A+    E I     RAD ALY AK   R+RVV
Sbjct: 474 -RITVTVSIGAAQVMGSELIHETFERADAALYKAKHESRDRVV 515


>gi|146309057|ref|YP_001189522.1| diguanylate cyclase [Pseudomonas mendocina ymp]
 gi|145577258|gb|ABP86790.1| diguanylate cyclase [Pseudomonas mendocina ymp]
          Length = 366

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 83/169 (49%), Gaps = 9/169 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148
           ++  + +L++ D L+G+ +  +F  +L    ++       L +V  D+D+FK++ND +GH
Sbjct: 182 AHEELERLAQTDSLTGVASRGSFQHALQRSIQEAERSSGHLVLVLLDVDHFKEVNDRWGH 241

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD  +  +   L        F+GRLGGEEF      +    A  L   LR+ +    +
Sbjct: 242 EAGDMALQHICQMLQQRLRVTDFLGRLGGEEFGLLLRHTDSTGAGPLVETLRRQLTERPL 301

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
                P I ++ + G+A        +  +YR AD+ LY  K+ GRN++V
Sbjct: 302 EYHGQP-IALSATFGLAAWPEDGRSAAELYRSADRRLYRGKQRGRNQLV 349


>gi|111021686|ref|YP_704658.1| hypothetical protein RHA1_ro04714 [Rhodococcus jostii RHA1]
 gi|110821216|gb|ABG96500.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 399

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 79/155 (50%), Gaps = 8/155 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+GLLN +A    L    E  +     +F D+D FK +ND  GH VGD+++  +S+ L
Sbjct: 245 DSLTGLLNRAAITEYLQRLFEPGAGPAVALFLDVDGFKDVNDTRGHRVGDRILQGVSEHL 304

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITIS 221
                 P  VGRLGG+EF A      E +   + + + +++ +    I  G  +  +TIS
Sbjct: 305 RHAMRAPSAVGRLGGDEFVAILPDIDEYD---VDDVVTRMLASITTPIDVGDELLVVTIS 361

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+A       +  +++ AD ALY AK+ G N  V
Sbjct: 362 VGMARSTTARTVDELLHHADTALYAAKRRGGNTAV 396


>gi|119773757|ref|YP_926497.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119766257|gb|ABL98827.1| response regulator receiver protein [Shewanella amazonensis SB2B]
          Length = 378

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 9/161 (5%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++ +D L+GL N   F       I +       LS++  DID+FK++ND  GH  GD  
Sbjct: 204 RMALLDGLTGLSNRRHFDEILDQEIRASTRTGHPLSLILLDIDFFKRLNDALGHQAGDDC 263

Query: 155 IAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212
           +  L   L  V   P  +  R GGEEFA     ++   A  +AN + K++  + I +  S
Sbjct: 264 LRQLGQLLSDVAARPRDLAVRYGGEEFAVLLPETTLTGAVEVANRIAKLLAKAAIPHPDS 323

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             + HIT+S G+ +         ++  +D ALY AK+SGRN
Sbjct: 324 QVASHITVSQGLVQWQRGMDAEALLEASDAALYRAKESGRN 364


>gi|312958309|ref|ZP_07772830.1| putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           domain [Pseudomonas fluorescens WH6]
 gi|311287373|gb|EFQ65933.1| putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           domain [Pseudomonas fluorescens WH6]
          Length = 333

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 73/130 (56%), Gaps = 2/130 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+ +  DID FK IND++GH  GD+V+  +++    V       GR+GGEEFAA   G +
Sbjct: 204 LAFLLLDIDDFKDINDSYGHLEGDQVLRRIAESGRGVLRRGDLFGRIGGEEFAAVLPGCA 263

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVA 247
            + A  +A  L K I+    N   G +  +TIS G+A     +  + ++  RAD A+Y A
Sbjct: 264 PEMALQVAERLGKEIQALSFNY-EGRAFSVTISQGLASLTEDDATLDSLFARADTAMYEA 322

Query: 248 KKSGRNRVVC 257
           K+ G+NRVV 
Sbjct: 323 KRLGKNRVVA 332


>gi|308125453|ref|ZP_07663403.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
 gi|308115576|gb|EFO53116.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
          Length = 179

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 90/169 (53%), Gaps = 26/169 (15%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDK 153
           ++L+  D L+G +N  A  + L     +       LSI++ D+D FK+IND FGH +GD 
Sbjct: 9   AELAHRDALTGAMNRHAVQTWLEQQARQVRWGHSTLSILYMDLDNFKKINDKFGHQMGDD 68

Query: 154 VIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           ++     + V+V  + +       R GGEEF      ++ ++A   A  +RK       N
Sbjct: 69  ILR----EFVMVVASSIAPDDRLVRWGGEEFVVFCPDTNIEQAVKKAEMIRK-------N 117

Query: 210 ISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +++   +H   +T S G+A+    E ++  + RAD+ LY+AK++GRNRV
Sbjct: 118 VANHLWVHGEALTCSIGVAQ-MQNERVTETMARADEVLYLAKRNGRNRV 165


>gi|229527378|ref|ZP_04416770.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229335010|gb|EEO00495.1| GGDEF family protein [Vibrio cholerae 12129(1)]
          Length = 312

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 83/167 (49%), Gaps = 8/167 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFI--SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           IS     + S+ID L+ L N   F   S   +    L ++ FDID+FKQIND +GHP GD
Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPETLLGLIIFDIDHFKQINDTYGHPAGD 205

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L           R GGEEF              LA  +R+ +E++ + +  
Sbjct: 206 YVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDEMANVIGLAETIRRYVESNTL-MWQ 264

Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  I +T+SAG    A   H      +++ ADQAL  AK+ GRNRV+
Sbjct: 265 GQQIALTLSAGCTMGAMMSHN--WDNLLHTADQALLSAKRLGRNRVI 309


>gi|225182117|ref|ZP_03735544.1| diguanylate cyclase [Dethiobacter alkaliphilus AHT 1]
 gi|225167180|gb|EEG76004.1| diguanylate cyclase [Dethiobacter alkaliphilus AHT 1]
          Length = 352

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 94/198 (47%), Gaps = 13/198 (6%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISY---NRISQLSRIDCLSGLLNHSAFISSLG- 123
           NL      ++  LL+G + G I+     S+   N + Q +  D L+ LLNH +F   L  
Sbjct: 154 NLITYFSQVSFLLLMGCLGGIIVSRERQSHSEKNLLEQAANRDYLTNLLNHRSFQEHLRG 213

Query: 124 --SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS---DQLVVVFGTPMFVGRLGGE 178
               N    +   DID FK +ND +GH  GDKV+  L    +  V V     F  R GGE
Sbjct: 214 DLENNSAFYLALADIDNFKLVNDKYGHVTGDKVLRELGSIINSTVSVKQGKAF--RYGGE 271

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EFA       + E   L  +++  + N  I    G +  +T+S G  ++  +EP   ++ 
Sbjct: 272 EFAIIIYNKEQDEVDKLLVEIKLSVAN-HIFYCEGEAFSVTMSFGSCKQNGEEP-DKLVE 329

Query: 239 RADQALYVAKKSGRNRVV 256
           + D+ LY AK  GRNR+V
Sbjct: 330 KVDKLLYEAKDRGRNRIV 347


>gi|158425538|ref|YP_001526830.1| putative diguanylate cyclase [Azorhizobium caulinodans ORS 571]
 gi|158332427|dbj|BAF89912.1| putative diguanylate cyclase [Azorhizobium caulinodans ORS 571]
          Length = 306

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 81/171 (47%), Gaps = 14/171 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
            RI QLS  D L+G+ N   F  +L S         + LS++  DID+FK  ND++GH  
Sbjct: 134 ERIYQLSITDGLTGISNRRRFDEALASLVAQHARSGKPLSVILIDIDHFKAFNDHYGHLS 193

Query: 151 GDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD  +  ++  +  ++ G      R GGEEFA    G     AA +A  LR  I    I 
Sbjct: 194 GDDCLRQVAAVIASLMRGESDLAARFGGEEFACVLPGLDLAGAASVAERLRSGIAGLGIP 253

Query: 210 ISSGPSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNRVV 256
            +     H+T S G    C + P++     ++  AD  LY AK  GRNRV 
Sbjct: 254 HAKADGGHVTASIGAV--CCERPMAQTSHGLLATADALLYRAKGEGRNRVA 302


>gi|328473015|gb|EGF43863.1| GGDEF family protein [Vibrio parahaemolyticus 10329]
          Length = 445

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 90/169 (53%), Gaps = 26/169 (15%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDK 153
           ++L+  D L+G +N  A  + L     +       LSI++ D+D FK+IND FGH +GD 
Sbjct: 275 AELAHRDALTGAMNRHAVQTWLEQQARQVRWGHSTLSILYMDLDNFKKINDKFGHQMGDD 334

Query: 154 VIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           ++     + V+V  + +       R GGEEF      ++ ++A   A  +RK       N
Sbjct: 335 ILR----EFVMVVASSIAPDDRLVRWGGEEFVVFCPDTNIEQAVKKAEMIRK-------N 383

Query: 210 ISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +++   +H   +T S G+A+    E ++  + RAD+ LY+AK++GRNRV
Sbjct: 384 VANHLWVHGEALTCSIGVAQ-MQNERVTETMARADEVLYLAKRNGRNRV 431


>gi|307311590|ref|ZP_07591230.1| diguanylate cyclase [Escherichia coli W]
 gi|306908145|gb|EFN38644.1| diguanylate cyclase [Escherichia coli W]
 gi|315060307|gb|ADT74634.1| predicted diguanylate cyclase [Escherichia coli W]
 gi|323379132|gb|ADX51400.1| diguanylate cyclase [Escherichia coli KO11]
          Length = 452

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +         + R+GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 404

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 405 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 441


>gi|307129860|ref|YP_003881876.1| sensory box/GGDEF family protein [Dickeya dadantii 3937]
 gi|306527389|gb|ADM97319.1| Sensory box/GGDEF family protein [Dickeya dadantii 3937]
          Length = 241

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 4/151 (2%)

Query: 107 DCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+ + N SA I  +      ++ +++  DID+FKQ+ND +GHP GD VI  L  ++  
Sbjct: 84  DPLTDVFNRSAIIDLVDHALEQDQAALIVLDIDHFKQVNDAYGHPTGDAVICSLIARIRD 143

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           V      +GR+GGEEF     G +   A  +A  +   +  + +   + P   +T S G+
Sbjct: 144 VLQGKGSIGRVGGEEFTILLDGYTLMAAVDVAEHIHASLNGAALE--ALPQQKVTASFGV 201

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +    +    T+   AD ALY AK  GRNRV
Sbjct: 202 SWAPPRTGFDTLYSTADTALYRAKHQGRNRV 232


>gi|260219632|emb|CBA26477.1| hypothetical protein Csp_E35650 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 260

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 91/161 (56%), Gaps = 13/161 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I   +R D L+GL N + F + L          +++L++ F D+D+FK++ND +GH  GD
Sbjct: 89  IRHSARHDELTGLPNRAHFAACLEDGIKQQSLKDDRLAVFFMDVDHFKEVNDRYGHAAGD 148

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINI 210
            ++  ++ +L         V RLGG+EFA    G S++  + LA   RK++ +  +  N+
Sbjct: 149 ALLRVVATRLHRAMRKDDMVCRLGGDEFACLLPGVSDK--SQLARLARKLLASIATPCNL 206

Query: 211 SS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +     +HI+I   ++   HK+ ++ ++  AD+A+YVAK+S
Sbjct: 207 NGVMVDVHISIGIAVSHPNHKKSLN-LLAMADEAMYVAKRS 246


>gi|157376654|ref|YP_001475254.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157319028|gb|ABV38126.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 636

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 72/141 (51%), Gaps = 4/141 (2%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+++ FD D FK +NDN+GH +GDK +  L+            VGR+GGEEF      ++
Sbjct: 497 LALILFDADNFKSVNDNYGHDIGDKALIELAKISSSHMRKADLVGRVGGEEFLIILPETT 556

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
             +A  +A  L   I  S +      +  +TISAGIA +   +  S ++ RAD ALY AK
Sbjct: 557 LYQATEIAQRLVNSIAKSDLG-DIAANFGMTISAGIAAQEKDKSFSELLQRADSALYQAK 615

Query: 249 KSGRNRVV---CFSDIENNTC 266
             GRN  V     SD E +  
Sbjct: 616 SEGRNCAVSNTSLSDAETDKA 636


>gi|117920874|ref|YP_870066.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117613206|gb|ABK48660.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 329

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 16/169 (9%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            +L+  D L+ L N  AF + LG        + L+ + FDID+FK+IND +GH +GD  +
Sbjct: 159 ERLADTDELTQLYNRRAFFN-LGRQIAQQTAQPLAFIMFDIDHFKRINDRWGHAMGDAAL 217

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++        T   + RLGGEEF      +  ++A  +A  +R   +   + + +G S
Sbjct: 218 IHIARLTQTKLRTNDILARLGGEEFGLILPNTHHEQAWQVAESIRHGFDTQPLQL-NGHS 276

Query: 216 IHITISAGIA-----ERCHKEPISTIIY----RADQALYVAKKSGRNRV 255
           IH T S GI+     +  H +   T++      ADQA+  AK++GRN+V
Sbjct: 277 IHCTASFGISSLVLPQINHPDEAQTLLETLFNNADQAMMQAKRAGRNQV 325


>gi|107099158|ref|ZP_01363076.1| hypothetical protein PaerPA_01000168 [Pseudomonas aeruginosa PACS2]
 gi|296386656|ref|ZP_06876155.1| hypothetical protein PaerPAb_00930 [Pseudomonas aeruginosa PAb1]
 gi|313112258|ref|ZP_07798029.1| putative GGDEF domain-containing protein [Pseudomonas aeruginosa
           39016]
 gi|310884531|gb|EFQ43125.1| putative GGDEF domain-containing protein [Pseudomonas aeruginosa
           39016]
          Length = 275

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N    +  L   NE+         +   D+D+FKQ+ND +GH  GD+V+  ++
Sbjct: 103 DPLTGLPNRRMLLERLREENERSQRHGQSYVLAMLDVDFFKQVNDTWGHDSGDRVLVEIA 162

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +          GR GGEEF      +  Q+A  +   +R  +    + + +  ++ +T
Sbjct: 163 RAMESELREYDLCGRWGGEEFLLLLPQTRLQDAGPVLERVRDSVRTLAVRVGT-EALSVT 221

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S G+ E    E  S  + RAD AL  AK+SGR++ V
Sbjct: 222 ASVGVTEHRIGETYSQTVNRADAALLDAKRSGRDKCV 258


>gi|330937915|gb|EGH41706.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 292

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 11/171 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVF--FDIDYFKQI 142
           S++ +   + +R  +LS  D L+   N  A ++SL +     EK S+ F   D+D+FK I
Sbjct: 102 SLVMQTMAARDRYQELSETDTLTHAPNRRALVASLNTALASAEKSSLWFAMIDLDHFKSI 161

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH VGD V+   +  L    G   F GRLGGEEF      ++  +A     +L  +
Sbjct: 162 NDTHGHDVGDNVLVGFATLLKSTKGLIAF-GRLGGEEFGVILSAANATDAVHALEELLML 220

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +  +        +  + S G+A     E +S ++  AD  LY AK+SGR 
Sbjct: 221 AQKDET-----VQVLYSFSGGVASLSRVETVSDLLKEADDNLYHAKRSGRK 266


>gi|261211055|ref|ZP_05925345.1| GGDEF family protein [Vibrio sp. RC341]
 gi|260840030|gb|EEX66630.1| GGDEF family protein [Vibrio sp. RC341]
          Length = 372

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 16/183 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEK-LSIVFFDIDYFKQIN 143
           ++L+    ++  LS  D L+GL N    +       SL   N +  + V  D+D FK +N
Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWSLAQDNRQPFACVMVDVDGFKAVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGD+V+  L+  L   F +   V RLGG+EF      ++   A  +A  +   I
Sbjct: 253 DLYGHDVGDRVLTTLAHTLRDHFRSDDLVCRLGGDEFLVLCPETNTLGAVHIAQAVCHAI 312

Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   I+I        ++S G+AE     + H E    ++  ADQA+Y+AK  G+NRV  F
Sbjct: 313 QQHVISIEGNLCWQGSVSMGVAEFDPKMKDHHE----LLRAADQAVYLAKHGGKNRVCSF 368

Query: 259 SDI 261
           + +
Sbjct: 369 NSV 371


>gi|253773945|ref|YP_003036776.1| diguanylate cyclase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161137|ref|YP_003044245.1| putative diguanylate cyclase [Escherichia coli B str. REL606]
 gi|300902798|ref|ZP_07120749.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|301302353|ref|ZP_07208484.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|242376836|emb|CAQ31551.1| diguanylate cyclase [Escherichia coli BL21(DE3)]
 gi|253324989|gb|ACT29591.1| diguanylate cyclase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973038|gb|ACT38709.1| predicted diguanylate cyclase [Escherichia coli B str. REL606]
 gi|253977252|gb|ACT42922.1| predicted diguanylate cyclase [Escherichia coli BL21(DE3)]
 gi|300405148|gb|EFJ88686.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|300842192|gb|EFK69952.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|315258076|gb|EFU38044.1| diguanylate cyclase domain protein [Escherichia coli MS 85-1]
          Length = 452

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +         + R+GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 404

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 405 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 441


>gi|148270691|ref|YP_001245151.1| diguanylate cyclase with PAS/PAC sensor [Thermotoga petrophila
           RKU-1]
 gi|147736235|gb|ABQ47575.1| diguanylate cyclase with PAS/PAC sensor [Thermotoga petrophila
           RKU-1]
          Length = 643

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 15/170 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
            RI  L+  D L+G+ N  AF S L         Y+ KLS VF D+D FK+IND+ GH V
Sbjct: 477 ERILWLAERDSLTGVYNREAFESRLAYLINLSKRYSRKLSFVFIDLDDFKRINDSKGHLV 536

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+    ++L  +      VGRLGG+EF      +    A IL   +++I E+ + ++
Sbjct: 537 GDRVLKEFVNRLTSLLRKSDVVGRLGGDEFGIILPETDRTGAEIL---MKRIEEHFRESV 593

Query: 211 S-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYV---AKKSGRNRV 255
              G    +  S GI+      E +  ++  AD+ +Y+   +KK GR  V
Sbjct: 594 PVDGELFSVNFSYGISVFPEDGESVEELLKVADERMYMNKFSKKRGRENV 643


>gi|86360385|ref|YP_472273.1| hypothetical protein RHE_PE00107 [Rhizobium etli CFN 42]
 gi|86284487|gb|ABC93546.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 667

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 120/270 (44%), Gaps = 46/270 (17%)

Query: 27  FMIYFSIFFSIF--IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           FM+  ++FFS    +A V    N+ +F   L  F  +  +L+  L L    I+  +   Y
Sbjct: 132 FMMSVNLFFSFRFPVALVASATNVLIFIGALCLFAPM--LLLHKLILGAFCISCFIFTSY 189

Query: 85  ISGSILKELFISY-----NRISQ------------LSRIDCLSGLLNHSAFISSL----- 122
           ++  + +E +  +      R+ Q            LS  D L+GL N  A    L     
Sbjct: 190 VNLQLNRERYKVFLNALEARLQQAAADERGKALLHLSNTDALTGLENRRAIDQHLREHWQ 249

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV---FGTPMFVGRLGG 177
               +    +++  D+DYFK+ ND +GH  GD+ +  +S  L  V   +G+   +GR GG
Sbjct: 250 LWQDHRAPFAVLLIDVDYFKRYNDCYGHQEGDRCLVAVSQILQSVASSWGS--IIGRYGG 307

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-------ITISAGIA-ERCH 229
           EEF         + A  LA  +      + +   + P  H       IT+S G++  R  
Sbjct: 308 EEFLVVTPMPDLERATDLAEAM-----CAAVRALAWPHEHRRDGTTVITVSVGLSYTRDE 362

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +  +IY AD+ALY AK +GR+ +V F 
Sbjct: 363 TKQVDKVIYEADRALYAAKATGRDNLVVFD 392


>gi|54298266|ref|YP_124635.1| hypothetical protein lpp2324 [Legionella pneumophila str. Paris]
 gi|53752051|emb|CAH13477.1| hypothetical protein lpp2324 [Legionella pneumophila str. Paris]
          Length = 506

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 95/181 (52%), Gaps = 15/181 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           LK+L     ++S+L+  D LS L N   F       I+    Y   L+++  D+D+FK +
Sbjct: 61  LKDLERVQKKLSKLAHFDVLSRLPNRLQFELDLKREIARSKRYGRHLALLSIDLDFFKNV 120

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL-R 200
           ND FGH VGD ++  ++ +L         V RLGG+EFA      ++ Q+A ++AN++ +
Sbjct: 121 NDRFGHDVGDGLLREVAKRLCSSLREEDCVARLGGDEFAVILTEINNPQQAKLVANNMIQ 180

Query: 201 KIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           K+ +   I    G ++ I IS GIA       E I T+   AD ALY AK+ GRN    F
Sbjct: 181 KMGKPFHI---KGHTVMIGISIGIAYFPDAGDEAI-TLRKNADIALYNAKECGRNNCQIF 236

Query: 259 S 259
           +
Sbjct: 237 T 237


>gi|310829700|ref|YP_003962057.1| putative GGDEF domain protein [Eubacterium limosum KIST612]
 gi|308741434|gb|ADO39094.1| putative GGDEF domain protein [Eubacterium limosum KIST612]
          Length = 616

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 18/171 (10%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           I+Q  R D L+GL N + F   + +Y     +E+ +++  D+D+FK +ND  GH  GD+V
Sbjct: 434 INQAHR-DALTGLYNRTTFEELVNTYLQERGDEEGAMMVVDLDHFKTVNDTLGHQGGDEV 492

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEF------AAAALGSSEQEAAILANDLRKIIENSQI 208
           +  L+ ++   FG    +GRLGG+EF        A      Q A  L   + +  E    
Sbjct: 493 LEDLAREMTACFGEEAVLGRLGGDEFLVFVKDVKACRDKPVQAARALCRAMNRCYER--- 549

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +SG  I +++S G+A          +   AD+ALY  K  G+N V  + 
Sbjct: 550 --NSG-QIEVSVSVGLAYSFRNSAFEMLYSMADEALYYMKDHGKNNVKVYD 597


>gi|300920917|ref|ZP_07137310.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
 gi|300412104|gb|EFJ95414.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
          Length = 452

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +         + R+GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 404

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 405 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 441


>gi|293433320|ref|ZP_06661748.1| inner membrane protein ycdT [Escherichia coli B088]
 gi|291324139|gb|EFE63561.1| inner membrane protein ycdT [Escherichia coli B088]
          Length = 431

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 264 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 323

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +         + R+GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 324 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 383

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 384 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 420


>gi|168178971|ref|ZP_02613635.1| putative diguanylate cyclase [Clostridium botulinum NCTC 2916]
 gi|182670072|gb|EDT82048.1| putative diguanylate cyclase [Clostridium botulinum NCTC 2916]
          Length = 437

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 12/173 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQIND 144
           E + + N+I +LS I  L+  LN  +F+  L         N++ +SIVF D+DYFK  ND
Sbjct: 256 ENYSANNKIKKLS-ICSLTYALNRGSFMEKLKDEFDDSKKNKRHISIVFIDVDYFKAYND 314

Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           N+GH  GDKV+  +   ++ V       VGR GG+EF          E  ++A ++ K I
Sbjct: 315 NYGHIEGDKVLMKIGKSIINVAKKYSGVVGRYGGDEFIVLLNEVKTSELEVIAMEISKEI 374

Query: 204 ENSQINIS-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
              +I    S  S + T+S G+A    K  E I  +I  AD+ALY +K++GRN
Sbjct: 375 NKLKIKREYSHISKYQTVSIGVASIIPKEEEKIEDLINYADKALYKSKENGRN 427


>gi|170289415|ref|YP_001739653.1| diguanylate cyclase with PAS/PAC sensor [Thermotoga sp. RQ2]
 gi|170176918|gb|ACB09970.1| diguanylate cyclase with PAS/PAC sensor [Thermotoga sp. RQ2]
          Length = 643

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 15/170 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
            RI  L+  D L+G+ N  AF S L         Y+ KLS VF D+D FK+IND+ GH V
Sbjct: 477 ERILWLAERDSLTGVYNREAFESRLAYLINLSKRYSRKLSFVFIDLDDFKRINDSKGHLV 536

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+    ++L  +      VGRLGG+EF      +    A IL   +++I E+ + ++
Sbjct: 537 GDRVLKEFVNRLTSLLRKSDVVGRLGGDEFGIILPETDRTGAEIL---MKRIEEHFRESV 593

Query: 211 S-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYV---AKKSGRNRV 255
              G    +  S GI+      E +  ++  AD+ +Y+   +KK GR  V
Sbjct: 594 PVDGELFSVNFSYGISVFPEDGESVEELLKVADERMYMNKFSKKRGRENV 643


>gi|115359689|ref|YP_776827.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
 gi|115284977|gb|ABI90493.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
          Length = 520

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 17/208 (8%)

Query: 68  NLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           + ++ I S    L +G++  S+L     ++   +   +  L+R D L+GL N      +L
Sbjct: 303 DRAIPIGSAMAVLAIGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRMLDVTL 362

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGR 174
                +       LS++F D+D+FK+ ND  GH  GD  +A ++  +      P  +  R
Sbjct: 363 AREWRRAARSQHALSLLFVDVDHFKRYNDTQGHQAGDDALAAVARCIAGCLRRPADYAAR 422

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--- 231
            GGEEF           A  +A  +R  I +  I   +G S  +T S G+   C+ E   
Sbjct: 423 YGGEEFVVVLPNVDTNGAVTIAEAIRTGILDLGIRHDTGVSGRLTASIGVTT-CYPERDD 481

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
            I   +  AD ALY AK+SGRN+VV  +
Sbjct: 482 SIQAALKLADDALYRAKESGRNQVVVLT 509


>gi|327484046|gb|AEA78453.1| GGDEF family protein [Vibrio cholerae LMA3894-4]
          Length = 527

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%)

Query: 76  ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127
           + ISLLL YI    L+E      +   R ++L  +   D L+ + N   F   L    +E
Sbjct: 315 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSEHLCKMLDE 374

Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           K S  ++ FDID FKQIND++GH  GD  +  + D +           R GG+EFA  + 
Sbjct: 375 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 434

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
            + E         +RK++E   + +++   + +TIS G +  C + EP   I+   D  L
Sbjct: 435 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 492

Query: 245 YVAKKSGRNRV 255
           Y++K  GRNRV
Sbjct: 493 YLSKSKGRNRV 503


>gi|299131993|ref|ZP_07025188.1| diguanylate cyclase [Afipia sp. 1NLS2]
 gi|298592130|gb|EFI52330.1| diguanylate cyclase [Afipia sp. 1NLS2]
          Length = 397

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 85/164 (51%), Gaps = 10/164 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           ++ L+  D L+G+ N    ++ L           +  S++  DID FK INDN+GH  GD
Sbjct: 215 VADLALFDDLTGVANRRRLLTCLAEECARSDRSMQPFSVLLMDIDEFKAINDNYGHAAGD 274

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +   +  +     T   + R+GG+EF      ++  EA ++A D+  +   +Q++ S+
Sbjct: 275 ECLRQFTRTVQQRLRTGDLLARMGGDEFCVVLPATTLHEAGLIARDMLGLCVAAQVHWSA 334

Query: 213 GPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254
             +I ++ S G+A+   +       +I  AD+ALY +K+ G++R
Sbjct: 335 A-AIKLSTSIGVAQWRPEIGHDFDRLIVTADEALYASKRDGKSR 377


>gi|209547860|ref|YP_002279777.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209533616|gb|ACI53551.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 660

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 10/164 (6%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +S+ D ++G+ N   F       ++ LG   + L +   D D+FK  ND +GHP GD  +
Sbjct: 482 ISQTDEMTGVANRRRFDEVLASELAGLGQGQDLLMLAMVDADWFKGYNDRYGHPAGDACL 541

Query: 156 AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
             ++  L     +    V R GGEEFA  A  +S   A ++   L   +   ++     P
Sbjct: 542 KEIARVLERNTRSKQDVVARYGGEEFAIIARIASASNAPVIGQALCSAMATVKLAHEGSP 601

Query: 215 SIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
             H+T+S GIA     + IS   ++  AD+ALY AK++GRN+ V
Sbjct: 602 FGHVTLSVGIALAAPDQNISPEALLLEADRALYRAKQAGRNQAV 645


>gi|52842861|ref|YP_096660.1| sensory box protein [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52629972|gb|AAU28713.1| sensory box protein, EAL domain, GGDEF domain, signal transduction
           protein [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 371

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 108/224 (48%), Gaps = 25/224 (11%)

Query: 48  IFLFYIGLTPFYGL--EYIL-VENLS-LVIISITISLLLGYISGSILKELFISYN----- 98
           IF FYI   P Y +  EY+  ++N + L I ++  ++L  ++  ++  EL +        
Sbjct: 143 IFEFYI---PIYSISQEYVFFLDNTNHLFIFALIFTVLYHFLVQNLQYELLLKEQNYLLI 199

Query: 99  ----RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
               +   LS  D L+ L N S F + L        +  E +++ F D+D FK IND +G
Sbjct: 200 ADKEKFHYLSHHDSLTNLPNRSYFHAHLQTLLENTDTKKEAITLYFMDLDKFKPINDEYG 259

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+++   S +L   F    F+ RLGG+EF A  +     + A  A  LR   E  Q
Sbjct: 260 HEFGDQLLLLTSKRLQSCFRKNDFIARLGGDEFTAIIVHKPHDQIA-EALTLRIEQEFEQ 318

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250
             + +G +IH TIS GIA      +    ++  AD+A+Y  K+ 
Sbjct: 319 PFVINGQTIHCTISVGIANYPRNAKNAEDLLKWADKAMYDNKRK 362


>gi|304311386|ref|YP_003810984.1| hypothetical protein HDN1F_17520 [gamma proteobacterium HdN1]
 gi|301797119|emb|CBL45335.1| Hypothetical protein HDN1F_17520 [gamma proteobacterium HdN1]
          Length = 137

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/128 (39%), Positives = 73/128 (57%), Gaps = 7/128 (5%)

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK IND +GH  GD V+   S+ ++        VGR GGEEFA    G + + A
Sbjct: 1   MLDLDHFKHINDTWGHHAGDAVLVAASEIMMANARPYDEVGRYGGEEFAILLPGVTLKIA 60

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHK----EPISTIIYRADQALYVAK 248
           A +A  LRK I ++ + I  G  I I+ S G+A  C+       ++ ++  ADQALY AK
Sbjct: 61  AGIAERLRKAISDAVVEI-DGNRISISASFGVA--CYPTHAISDLNDLLKAADQALYEAK 117

Query: 249 KSGRNRVV 256
           + GRNRV+
Sbjct: 118 RGGRNRVI 125


>gi|157737696|ref|YP_001490379.1| GGDEF domain-containing protein [Arcobacter butzleri RM4018]
 gi|157699550|gb|ABV67710.1| GGDEF domain protein [Arcobacter butzleri RM4018]
          Length = 479

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 71/131 (54%), Gaps = 1/131 (0%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           ++S++F D+D FK+IND  GH  GD V+  +++ L         + R GGEEF  A + S
Sbjct: 350 EISVIFLDVDNFKRINDELGHQKGDLVLKRVANILSSGIRETDLLARWGGEEFIIALIDS 409

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
             + + I+  +LRK IE   I +    S ++T S G+      E   +++ R D+A+Y +
Sbjct: 410 PLENSKIVCENLRKAIE-EDIELMEICSFNVTASFGLTMVKQLETKESVLIRVDEAMYKS 468

Query: 248 KKSGRNRVVCF 258
           K +GRN +   
Sbjct: 469 KNNGRNTITVL 479


>gi|56459409|ref|YP_154690.1| signal protein [Idiomarina loihiensis L2TR]
 gi|56178419|gb|AAV81141.1| Signaling protein with membrane-bound sensor domain and GGDEF
           domain [Idiomarina loihiensis L2TR]
          Length = 400

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 12/183 (6%)

Query: 89  ILKELFISYNRISQLSRI---DCLSGLLNHSAFISSLGSYNEKLSI-------VFFDIDY 138
           +LKE+    +  +QL  +   D L+GL + S F+    +  ++  +          D+D+
Sbjct: 215 LLKEIKHRKSLEAQLRMVAERDALTGLDSRSHFMKRAEALLQRAQLEKTPFCLFMIDVDH 274

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND +GH  GD ++  +++           +GR GGEEF      +S  EA  +A  
Sbjct: 275 FKRINDTWGHTRGDLILTKIAEVCEQSLRPTDVIGRFGGEEFVVGLPHTSPSEAQTIAER 334

Query: 199 LRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L++ +E   +  +    + ++++ GIA     ++ +  +I RAD  LY  K+ GRNRVV 
Sbjct: 335 LKENVEALPLT-AELSELCLSVTIGIAAAHGEEDDLDVLITRADNMLYEGKREGRNRVVM 393

Query: 258 FSD 260
           F +
Sbjct: 394 FGE 396


>gi|54293995|ref|YP_126410.1| hypothetical protein lpl1054 [Legionella pneumophila str. Lens]
 gi|53753827|emb|CAH15290.1| hypothetical protein lpl1054 [Legionella pneumophila str. Lens]
 gi|307609821|emb|CBW99338.1| hypothetical protein LPW_11161 [Legionella pneumophila 130b]
          Length = 506

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 95/181 (52%), Gaps = 15/181 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           LK+L     ++S+L+  D LS L N   F       I+    Y   L+++  D+D+FK +
Sbjct: 61  LKDLERVQKKLSKLAHFDVLSRLPNRLQFELDLKREIARSKRYGRHLALLSIDLDFFKNV 120

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL-R 200
           ND FGH VGD ++  ++ +L         V RLGG+EFA      ++ Q+A ++AN++ +
Sbjct: 121 NDRFGHDVGDGLLREVAKRLCSSLREEDCVARLGGDEFAVILTEINNPQQAKLVANNMIQ 180

Query: 201 KIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           K+ +   I    G ++ I IS GIA       E I T+   AD ALY AK+ GRN    F
Sbjct: 181 KMGKPFHI---KGHTVMIGISIGIAYFPDAGDEAI-TLRKNADIALYNAKECGRNNCQIF 236

Query: 259 S 259
           +
Sbjct: 237 T 237


>gi|238792826|ref|ZP_04636457.1| hypothetical protein yinte0001_5820 [Yersinia intermedia ATCC
           29909]
 gi|238727934|gb|EEQ19457.1| hypothetical protein yinte0001_5820 [Yersinia intermedia ATCC
           29909]
          Length = 414

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 13/158 (8%)

Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F        +    Y +  S++  D D+FKQ+ND FGH  GD+V+  L+
Sbjct: 260 DPLTGLGNRRQFFNLVEHANAQSQRYAQGFSLMLVDADHFKQVNDQFGHHKGDEVLILLA 319

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HI 218
             L         + R GGEEFA     ++   A  +A  +R+ ++     +   P++  +
Sbjct: 320 RTLESRIRESDMIFRWGGEEFAILLPSTNLAGALQVAESIREAVQ-----LVCQPNLPQL 374

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T+S G+A+    E   ++  R D+ALY AK +GRNRV+
Sbjct: 375 TVSIGVAQHQVGEDSDSLFKRMDEALYRAKAAGRNRVL 412


>gi|325925985|ref|ZP_08187351.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
 gi|325543581|gb|EGD14998.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
          Length = 954

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 56/159 (35%), Positives = 86/159 (54%), Gaps = 14/159 (8%)

Query: 107 DCLSGLLNHSAFISSLG------SYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN S  + ++       ++ E  L++V  D+D+FKQ+ND  GH VGD V+A + 
Sbjct: 790 DALTGLLNRSGILEAMAEELQGCAHGEHPLAVVLIDLDHFKQVNDEHGHLVGDAVLAKVG 849

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSI 216
            +L         VGR GGEE      G S+Q      + LR I E   I    + +   +
Sbjct: 850 ARLTACLRDSDKVGRYGGEELLLLLPGMSQQS----QHRLRAIHEALSIAPYEVGAARPL 905

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +T S G++     +  ++++ RAD+ALY AK+SGRNR+
Sbjct: 906 QVTCSVGVSWFRVGDTAASLLARADEALYRAKRSGRNRI 944


>gi|294637583|ref|ZP_06715865.1| putative inner membrane protein YcdT [Edwardsiella tarda ATCC
           23685]
 gi|291089254|gb|EFE21815.1| putative inner membrane protein YcdT [Edwardsiella tarda ATCC
           23685]
          Length = 451

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 28/202 (13%)

Query: 79  SLLLGYISGSILKELFI-----SYNRISQLSRI-------DCLSGLLNHSAFISSLGSYN 126
           SLL G ++   + E+F+      Y R+     +       D L+   N S +  +L    
Sbjct: 248 SLLFGLLANFCVMEIFLYDIFQRYRRMQHAYVVTHDNAIRDGLTRAYNRSYYYDALQHAL 307

Query: 127 EKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           ++ S      I+  DID+FKQ+ND +GH  GD+ +  ++  +  V  T   + R+GG+E 
Sbjct: 308 QRASVEYPPAILIMDIDHFKQVNDRYGHLSGDRALIAVTRAIEQVLATGDVLARIGGDEL 367

Query: 181 AAAALGSSEQEAAILAN--DLRKIIENSQINISSGPSIHITISAG----IAERCHKEPIS 234
               L + E EA + A    +R  +    ++   G  + +T+S G       RC  E   
Sbjct: 368 -CVLLPAVENEAVLQARAEQIRARVAALTLSAQDGRPVTVTLSIGGVLCRPARCSAE--- 423

Query: 235 TIIYRADQALYVAKKSGRNRVV 256
             + RAD ALY AK++GRNRVV
Sbjct: 424 AYMVRADSALYQAKQTGRNRVV 445


>gi|325982818|ref|YP_004295220.1| diguanylate cyclase [Nitrosomonas sp. AL212]
 gi|325532337|gb|ADZ27058.1| diguanylate cyclase [Nitrosomonas sp. AL212]
          Length = 487

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 86/185 (46%), Gaps = 16/185 (8%)

Query: 91  KELFI--SYNRISQL---SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           KEL +  S +RI  L   S+ D L+G  N + F  +L         YN  L++   D+D+
Sbjct: 301 KELLMIHSLSRIKDLEDKSQRDGLTGAYNRTYFDETLRREFNLSTQYNLPLTVAIIDLDH 360

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND +GH  GD ++A +   +         + R GGEEFA    G+    A  L   
Sbjct: 361 FKHVNDTYGHVAGDSLLATVVKTIFDQIRQDDTLSRYGGEEFALILPGTPLSAARNLIAR 420

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK----EPISTIIYRADQALYVAKKSGRNR 254
           L+  +        S   IHIT S G+A              +I  AD ALY AK +GRN+
Sbjct: 421 LKDSVAAISYKFDSNSIIHITASIGVASYYENAASFHDAKDLIKAADSALYAAKHAGRNQ 480

Query: 255 VVCFS 259
           ++ +S
Sbjct: 481 IIEWS 485


>gi|238927426|ref|ZP_04659186.1| possible diguanylate cyclase [Selenomonas flueggei ATCC 43531]
 gi|238884708|gb|EEQ48346.1| possible diguanylate cyclase [Selenomonas flueggei ATCC 43531]
          Length = 620

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 91/174 (52%), Gaps = 14/174 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL  +  +++QL+  D L+ LLN           ++   +    LS++  DID+FK +N
Sbjct: 440 EELHTANQQLTQLAIRDTLTNLLNRREMERLLKEAVALSQAQKTPLSVILMDIDHFKAVN 499

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           DN+GH +GDKV+  +SD +           R GG+EF     G+    A  +   +R+ +
Sbjct: 500 DNYGHDMGDKVLLTVSDAISRTIRGSDAGCRWGGDEFFIILQGAPLAVAGRVGERIRRRV 559

Query: 204 ENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV 255
           E +++     P  H +TIS G A    ++     +++ AD+ALY AKK+GRN V
Sbjct: 560 EEAKM-----PFHHNVTISVGAAAFDPEQDNELQLFKNADEALYQAKKAGRNVV 608


>gi|146311799|ref|YP_001176873.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter sp. 638]
 gi|145318675|gb|ABP60822.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter sp. 638]
          Length = 410

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 75/158 (47%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F       N       ++ S++  D D+FK IND FGH  GD+V+  LS
Sbjct: 256 DSMTGLLNRRQFYRITEQTNPSHLPLQDQFSLLLVDTDHFKNINDVFGHLKGDEVLISLS 315

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L        FV R GGEEF      +    A  +A  +R  +  ++I I   P    T
Sbjct: 316 RTLEACSRKDDFVFRWGGEEFVILLPRTQLDIAMQVAETIRAAV--ARIAIPGLP--RFT 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRN+V+ 
Sbjct: 372 VSIGVARHNPDESIDELFKRVDDALYRAKNDGRNKVLA 409


>gi|187477502|ref|YP_785526.1| signaling protein [Bordetella avium 197N]
 gi|115422088|emb|CAJ48612.1| putative signaling protein [Bordetella avium 197N]
          Length = 429

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 14/179 (7%)

Query: 88  SILKEL--FISYNRI-SQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDID 137
           S+LK++  F++  ++ S+  R D L+GLLN     + +   +          S++  DID
Sbjct: 246 SVLKDISQFVAREKLLSKQVRSDALTGLLNRRGAAAKIQRLHRAAHQSGRFYSVIMADID 305

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK+IND FGH +GD V+   ++ +         V R GGEEF          +A  LA 
Sbjct: 306 HFKKINDQFGHLLGDTVLKRCANLIRDNVREGDAVARWGGEEFLILLPNCPLIKAVALAE 365

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +R  I      I+      +T+S G+      E   ++I RAD+ALY AK  GRN+V 
Sbjct: 366 RIRNTIATLTDPITG----QVTLSLGVGTSSPAETPQSLIQRADKALYKAKAQGRNQVA 420


>gi|87200494|ref|YP_497751.1| diguanylate cyclase [Novosphingobium aromaticivorans DSM 12444]
 gi|87136175|gb|ABD26917.1| diguanylate cyclase [Novosphingobium aromaticivorans DSM 12444]
          Length = 374

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 9/174 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           + L  S +   + +  D L+GL N  AF +             E L + F DID+FK+IN
Sbjct: 187 RALQKSLDEARRNAEEDHLTGLPNRRAFEALFEREYQEARKAGEPLCVAFCDIDHFKRIN 246

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+V+  +++ L  +      V R GGEEFA      +  +A    +  R+ I
Sbjct: 247 DAHGHAAGDRVLKLVAETLNRISDARCHVARHGGEEFAVLFRSLTPDDAWERLDRARQEI 306

Query: 204 ENSQ-INISSG-PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + + +N ++  P   +T S GIA+    +  +  +  AD ALY AK+SGRN++
Sbjct: 307 ADRRLVNRATDLPFGRVTFSGGIADVFAYDSRTNALRAADDALYAAKQSGRNQI 360


>gi|307720847|ref|YP_003891987.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978940|gb|ADN08975.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
          Length = 630

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 93/187 (49%), Gaps = 14/187 (7%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFF 134
           I L+L Y+       L   Y +  + + ID L+ + N    S F+ +    N  L ++  
Sbjct: 206 IMLILAYV-------LVYLYYKTRKKAFIDPLTQVYNRQYLSEFLETTSLQNYYLMMI-- 256

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK++NDN+GH +GD V+  ++ ++         V R GGEEF         +E+  
Sbjct: 257 DLDNFKRVNDNYGHNIGDDVLVAVAQEIKSTVRQEDIVIRFGGEEFILLVDKKENKESIG 316

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           +A  +R+ + N  I  S    I +T+S G+    +  + +   I  AD+ LYVAK SGRN
Sbjct: 317 VAERIRQAVMNLDIQ-SHDNQISMTLSIGVNPFPYSAKNMDEAIKIADEQLYVAKSSGRN 375

Query: 254 RVVCFSD 260
           RV  F D
Sbjct: 376 RVEIFDD 382


>gi|304406647|ref|ZP_07388302.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9]
 gi|304344180|gb|EFM10019.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9]
          Length = 354

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 9/182 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L +    + +L + D L+ L NH  F   L        + +  L +   DID FK +N
Sbjct: 165 QDLLVKTVLMDKLIKTDALTELYNHITFHEYLEHLIIQHEANDLSLQLALIDIDNFKLVN 224

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD ++  +S+ +    G      R GGEEFA        +++  L   LR  I
Sbjct: 225 DQYGHRAGDAILRRVSEIIRTESGANDVAARYGGEEFAILLTDKMPEQSLALLEKLRVKI 284

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                ++  G    +TIS G +     E       R D ALY+AKKSG+N++V   +I+ 
Sbjct: 285 AAETHDLLDGKK--VTISIGFSRYRPWEGKEVFFARTDAALYMAKKSGKNQIVHADEIDP 342

Query: 264 NT 265
           ++
Sbjct: 343 HS 344


>gi|283785725|ref|YP_003365590.1| cellulose synthesis regulatory protein (signal transduction
           protein) [Citrobacter rodentium ICC168]
 gi|282949179|emb|CBG88787.1| cellulose synthesis regulatory protein (signal transduction
           protein) [Citrobacter rodentium ICC168]
          Length = 564

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 10/163 (6%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N  A             +  +  S++  D+D+FK IND FGH  GD+V+   +
Sbjct: 401 DTLTRLYNRGALFGKARHLAQRCQAQKQPFSVIQIDLDHFKSINDRFGHQAGDRVLTHAA 460

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +          GR+GGEEF      ++  +A  +A  +R+ +   ++ ++   ++ I+
Sbjct: 461 SLISGTLRADDVAGRVGGEEFCVVLPATTLAQAEAIAERIRQRLNEKELLVAKSTTLRIS 520

Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            S G+  A+         +   AD+ LY+AK+ GRNR VC +D
Sbjct: 521 ASLGVSSAQENDDYDFEQLQSLADRRLYLAKQMGRNR-VCITD 562


>gi|134290975|ref|YP_001114744.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
 gi|134134164|gb|ABO58489.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
          Length = 328

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 12/167 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+R D L+GL N  AF   L             LS++F DID FK  ND++GH  GD
Sbjct: 147 LQRLARRDALTGLENRGAFDEMLSQEWANTLRTGRHLSLLFIDIDRFKSYNDHYGHQSGD 206

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  ++  +      P   V R GGEEF      +  + AA +A  +R+ I +  + ++
Sbjct: 207 QALKAVAHCISACVSRPSDHVARYGGEEFVVILPETDVEGAAAVAEKIRQAIHDMHVAHV 266

Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255
            SG   ++T S G++   H        +I  AD A+Y AK  GRNRV
Sbjct: 267 KSGFG-YVTASIGVSSSAHPAVHDGDALIRVADLAVYEAKSRGRNRV 312


>gi|254225335|ref|ZP_04918947.1| GGDEF family protein [Vibrio cholerae V51]
 gi|125622176|gb|EAZ50498.1| GGDEF family protein [Vibrio cholerae V51]
          Length = 537

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%)

Query: 76  ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127
           + ISLLL YI    L+E      +   R ++L  +   D L+ + N   F   L    +E
Sbjct: 325 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 384

Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           K S  ++ FDID FKQIND++GH  GD  +  + D +           R GG+EFA  + 
Sbjct: 385 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 444

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
            + E         +RK++E   + +++   + +TIS G +  C + EP   I+   D  L
Sbjct: 445 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 502

Query: 245 YVAKKSGRNRV 255
           Y++K  GRNRV
Sbjct: 503 YLSKSKGRNRV 513


>gi|117619871|ref|YP_855827.1| sensor histidine kinase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117561278|gb|ABK38226.1| sensor histidine kinase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 517

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 75/173 (43%), Gaps = 17/173 (9%)

Query: 103 LSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           LSR D L+G  N      F          L ++ FD D+FKQ+ND FGH VGD+V+  L 
Sbjct: 352 LSRHDALTGAFNRHYLDEFERRHQQRGGSLGVIMFDCDHFKQVNDRFGHEVGDQVLIQLV 411

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS------G 213
                       + R GGEEF   A    E         L ++ E  ++ I+        
Sbjct: 412 RLCQQHLRREDALIRWGGEEFLLLAAKGGE--------PLDQLAEQLRLRIARYPWQELA 463

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           P++ +T+S G         +   I RAD ALY AK +GRNR   + D     C
Sbjct: 464 PALAVTVSLGYHHSTTDTQLQEAIRRADVALYQAKANGRNRSERWQDDGAGNC 516


>gi|296164430|ref|ZP_06847004.1| diguanylate cyclase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900212|gb|EFG79644.1| diguanylate cyclase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 361

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 86/161 (53%), Gaps = 13/161 (8%)

Query: 104 SRIDCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           S  D L+GL N   F      IS+ G  +  LS++  D+D FK++ND  GH  GD+++  
Sbjct: 194 SSTDPLTGLRNRRGFYRAASRISAAGHPSSCLSVLMVDLDRFKRVNDTHGHATGDRILVA 253

Query: 158 LSDQLVVVFGTPMFVGRLGGEEF-AAAALGSSEQEAAILANDLRKIIENSQINISS--GP 214
           ++D L  +      + R+GGEEF  A  +G+  QEA  +A  LR  I  +   +++  G 
Sbjct: 254 VADNLRRLGDEGTIIARVGGEEFLVAQTIGT--QEALRMAEALRLAIAATPWGVTASVGA 311

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S     + G  E   ++ I  +++ AD A+Y AK++G N+V
Sbjct: 312 SSFRLPAEG--ETLDRQLIERLVHAADLAMYEAKRAGGNQV 350


>gi|261822254|ref|YP_003260360.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
 gi|261606267|gb|ACX88753.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
          Length = 353

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 88/182 (48%), Gaps = 12/182 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           LGY++ +   +L      + ++S  D ++ L N   +   L         +    ++V F
Sbjct: 171 LGYVTYTTALKLAEHKRMLMEVSIHDGMTNLYNRHHWEHLLKHEYDICLRHKRTATLVLF 230

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK  NDNFGH VGD+ I  L+ +L   F     +GR GG+EFA     +   +A  
Sbjct: 231 DIDHFKAFNDNFGHNVGDQAILLLARELTSGFRDTDVIGRFGGDEFAVILPQTRAGDALD 290

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGR 252
             N +R+ +  S   +S  P + + +S GIAE    E    I +   AD ALY AK  GR
Sbjct: 291 AVNRIRESL--SLKFLSQTPQLAVFVSVGIAE-ISPEMGQYIDWLKAADMALYRAKNKGR 347

Query: 253 NR 254
            R
Sbjct: 348 RR 349


>gi|126175209|ref|YP_001051358.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|125998414|gb|ABN62489.1| diguanylate cyclase [Shewanella baltica OS155]
          Length = 579

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 72/137 (52%), Gaps = 8/137 (5%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAA 183
           +N  L I+ FDID FKQ ND +GH  GD+ +  + +    +   P   + R GGEEF   
Sbjct: 434 HNMPLGIILFDIDNFKQFNDRYGHVAGDQCLKNIVNAAKSILKRPTDMLARYGGEEFMIV 493

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIAERCHKEP----ISTIIY 238
              S  +E    A  LR+ I + +I     P   I TISAGI   C + P     +++I 
Sbjct: 494 LPSSHLEEVYQFAELLREKIISLEIPHEDSPHAGILTISAGIT--CWQLPQQLDANSLIN 551

Query: 239 RADQALYVAKKSGRNRV 255
           RAD+ALY AK +GRNR 
Sbjct: 552 RADEALYHAKLTGRNRT 568


>gi|87121506|ref|ZP_01077395.1| sensory box sensor/GGDEF/EAL domain protein [Marinomonas sp.
           MED121]
 gi|86163349|gb|EAQ64625.1| sensory box sensor/GGDEF/EAL domain protein [Marinomonas sp.
           MED121]
          Length = 878

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 16/173 (9%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +++D L+GLLN + F+  +  Y +K S     I F D+D FK +ND +GH VGD+++   
Sbjct: 439 AQMDSLTGLLNRATFVEKMSDYIKKNSAHKSAIFFIDLDKFKTVNDQYGHHVGDELLLEF 498

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-----QEAAILANDLRKIIENSQINISSG 213
           S +L   F     + RLGG+EFA   LG ++     + A  +   LRK         S+G
Sbjct: 499 SRRLKACFSENEVISRLGGDEFAVFLLGVTDLPQLNKLADKVVAGLRK-----PFAFSNG 553

Query: 214 PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            +  I+ S GI+      +  S  + +AD A+Y  K++GR   + F+   N T
Sbjct: 554 FNFKISASIGISMLDETVKSASEGLKQADMAMYEVKRNGRADFIIFNQGLNET 606


>gi|134291605|ref|YP_001115374.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
 gi|134134794|gb|ABO59119.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
          Length = 210

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 12/167 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+R D L+GL N  AF   L             LS++F DID FK  ND++GH  GD
Sbjct: 29  LQRLARRDALTGLENRGAFDEMLSQEWANTLRTGRHLSLLFIDIDRFKSYNDHYGHQSGD 88

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  ++  +      P   V R GGEEF      +  + AA +A ++R+ I +  + ++
Sbjct: 89  QALKAVAHCISACVSRPSDHVARYGGEEFVVILPETDVEGAAAVAEEIRQAIHDMHVAHV 148

Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255
            SG   ++T S G++   H        +I  AD A+Y AK  GRNRV
Sbjct: 149 KSGFG-YVTASIGVSSSAHPAVHDGDALIRVADLAVYEAKSRGRNRV 194


>gi|254286172|ref|ZP_04961132.1| fog: ggdef domain [Vibrio cholerae AM-19226]
 gi|150423841|gb|EDN15782.1| fog: ggdef domain [Vibrio cholerae AM-19226]
          Length = 527

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%)

Query: 76  ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127
           + ISLLL YI    L+E      +   R ++L  +   D L+ + N   F   L    +E
Sbjct: 315 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 374

Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           K S  ++ FDID FKQIND++GH  GD  +  + D +           R GG+EFA  + 
Sbjct: 375 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 434

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
            + E         +RK++E   + +++   + +TIS G +  C + EP   I+   D  L
Sbjct: 435 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 492

Query: 245 YVAKKSGRNRV 255
           Y++K  GRNRV
Sbjct: 493 YLSKSKGRNRV 503


>gi|76817698|ref|YP_336807.1| hypothetical protein BURPS1710b_A1650 [Burkholderia pseudomallei
           1710b]
 gi|254263027|ref|ZP_04953892.1| diguanylate cyclase [Burkholderia pseudomallei 1710a]
 gi|76582171|gb|ABA51645.1| putative membrane protein [Burkholderia pseudomallei 1710b]
 gi|254214029|gb|EET03414.1| diguanylate cyclase [Burkholderia pseudomallei 1710a]
          Length = 462

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 87/173 (50%), Gaps = 11/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           + LF ++  + + +  D L+ + N S F             +N  L++V  D D+FKQ N
Sbjct: 275 RRLFDAHASLMRTASHDALTMVYNRSYFNEQFERAFHYARRHNTPLALVMVDDDHFKQYN 334

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD  +A ++  L  V G    FV R GGEEFA    G+ E+ AA +A   R+ 
Sbjct: 335 DTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPGADERGAATIAERARQA 394

Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
           +E  +I   + P  ++T+SAG A       E    +I  AD ALY AK  GRN
Sbjct: 395 VERLRIAADTAPG-YVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRN 446


>gi|77456418|ref|YP_345923.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1]
 gi|77380421|gb|ABA71934.1| conserved GGDEF domain protein [Pseudomonas fluorescens Pf0-1]
          Length = 329

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 2/130 (1%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           +++ +  DID FK IND +GHP GD V+  +++            GR+GGEEFAA   G 
Sbjct: 199 QMAFLLLDIDDFKVINDTYGHPEGDNVLQRIAECGRASLRRGDLFGRIGGEEFAAVFPGC 258

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYV 246
           +   A  +A  L++ I+    N  +  +  IT+S G+       E + T+  RAD A+Y 
Sbjct: 259 APDMAMQVAERLQREIQRLSFN-HADQTFGITVSQGLTSLTPEDESLDTLFARADAAMYE 317

Query: 247 AKKSGRNRVV 256
           AK+ G+NR++
Sbjct: 318 AKRQGKNRII 327


>gi|117927828|ref|YP_872379.1| diguanylate cyclase [Acidothermus cellulolyticus 11B]
 gi|117648291|gb|ABK52393.1| diguanylate cyclase [Acidothermus cellulolyticus 11B]
          Length = 517

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 81/166 (48%), Gaps = 14/166 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            +I+ L+  D L+G+ N      +L           + +S+V  DID+FK IND FGH V
Sbjct: 341 EQITLLAATDMLTGVANRRTLEENLDRMFAQASRAAQPISVVMVDIDHFKHINDTFGHQV 400

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+ +  ++  L     +   V R GGEEF      +    AA  A +LR+ I      +
Sbjct: 401 GDQTLQRVARALQQGCRSSDLVARYGGEEFVVVLPDTDLAGAATAAENLRRRI----FGL 456

Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + P   +T+S G+A    H      I+  AD ALY +K +GRNRV
Sbjct: 457 DAEP--RVTVSLGVATFPLHGGSPDHILSAADAALYQSKSAGRNRV 500


>gi|88704261|ref|ZP_01101975.1| GGDEF domain protein [Congregibacter litoralis KT71]
 gi|88701312|gb|EAQ98417.1| GGDEF domain protein [Congregibacter litoralis KT71]
          Length = 447

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 8/176 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L    NR  +    D L+G+ +  A+       +S    Y E   +V  DID+FK++N
Sbjct: 273 EQLQEKLNRNREKLMRDTLTGVHSRLAYDEMMAQEMSRFRRYKETFCLVMLDIDFFKRVN 332

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGH  GDK +  ++  +        ++ R+GGEEF      +    A+ L   +R  +
Sbjct: 333 DTFGHAAGDKALQSVASIVGDRIRETDYLFRVGGEEFVLLLPRTEVSAASPLVEVIRVAV 392

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             S  +  + P + IT+SAG+      +   T+  RAD A+Y AKK+GRNR+V   
Sbjct: 393 GESGFHYENQP-VTITLSAGLTAVRDDDTPETLFARADDAMYRAKKAGRNRLVTLE 447


>gi|85703548|ref|ZP_01034652.1| diguanylate cyclase, putative/response regulator [Roseovarius sp.
           217]
 gi|85672476|gb|EAQ27333.1| diguanylate cyclase, putative/response regulator [Roseovarius sp.
           217]
          Length = 479

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 13/164 (7%)

Query: 106 IDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+G  N           I +  S  +  +++  D+D+FKQ+ND +GH  GD+V+  +
Sbjct: 309 IDPLTGAHNRRFALPFLQRVIETSRSTGKSFAVMVADLDFFKQVNDRYGHAAGDRVLCEV 368

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIH 217
           +  L         + R+GGEEF      ++   A   A+ L  +I  + I +S    ++H
Sbjct: 369 TRHLRAHLREGDMLARIGGEEFLIVTPATTRLRAQRTADRLCAMIAQTPITLSGHKATLH 428

Query: 218 ITISAGI-----AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +T+S G+     +      P+  ++  AD+ALY AK  GRN V 
Sbjct: 429 VTVSIGVTMANPSPSRAAPPVGQLLEEADRALYAAKAQGRNTVT 472


>gi|262368213|ref|ZP_06061542.1| response regulator [Acinetobacter johnsonii SH046]
 gi|262315891|gb|EEY96929.1| response regulator [Acinetobacter johnsonii SH046]
          Length = 476

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 120/243 (49%), Gaps = 14/243 (5%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           P   +I+ ++ +++F  ++I     F+ Y  LT +Y       +N     IS+ I L + 
Sbjct: 233 PLAGLIWAALSYNLFYVSIINSLVCFVTYHSLTTYYISR--TADNFLATSISVRIGLCML 290

Query: 84  YISGSIL----KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFF 134
            I+  +L    +     Y  +  L+  D L+ + N   F +   +  ++     +SI+  
Sbjct: 291 MIAPLLLCIVSRNRHDLYKEVLYLANHDPLTHVGNRRFFFTQTENLLKENLVKSMSIIVL 350

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK++ND +GH +GD ++   +  +           R+GGEEF      ++E E+ I
Sbjct: 351 DIDHFKKMNDQYGHYIGDVLLQSFATTVKSNLREQDLFARMGGEEFVVVLNNTTEIESQI 410

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGR 252
           +A  + + +  S+  ++    + +T+S G+  +    +  + +++ RAD+ALY AK  GR
Sbjct: 411 IAERICRAVATSKTQVAHA-VLSMTVSLGVVHQVLPTQNSLQSLLNRADRALYQAKTLGR 469

Query: 253 NRV 255
           N+V
Sbjct: 470 NQV 472


>gi|261886477|ref|ZP_06010516.1| diguanylate cyclase [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 404

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 77/153 (50%), Gaps = 6/153 (3%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++L+  D LSG  +   F   +  Y     ++  ++  FDID FK+IND FGH +GD +
Sbjct: 253 MAKLANTDFLSGAYSRRYFYMDMKEYYKNCSDQSFAVAMFDIDDFKKINDKFGHDIGDII 312

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           I  LS  L+        V R GGEEF       +  +A   A  +R  I +S INI  G 
Sbjct: 313 IQKLSSFLIGWISEGDLVARFGGEEFCVVLKNINFDDAVKKAVSIRAKIASSLINI-KGF 371

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVA 247
            I  T+S G+      + I  II +AD+ALY A
Sbjct: 372 DIKFTVSIGVTNGDFSKNIDHIISKADEALYNA 404


>gi|184157424|ref|YP_001845763.1| GGDEF domain-containing protein [Acinetobacter baumannii ACICU]
 gi|213156113|ref|YP_002318533.1| hypothetical protein AB57_1151 [Acinetobacter baumannii AB0057]
 gi|215484151|ref|YP_002326376.1| WspR [Acinetobacter baumannii AB307-0294]
 gi|239503319|ref|ZP_04662629.1| WspR [Acinetobacter baumannii AB900]
 gi|260557373|ref|ZP_05829588.1| WspR [Acinetobacter baumannii ATCC 19606]
 gi|301347761|ref|ZP_07228502.1| WspR [Acinetobacter baumannii AB056]
 gi|301512248|ref|ZP_07237485.1| WspR [Acinetobacter baumannii AB058]
 gi|301596672|ref|ZP_07241680.1| WspR [Acinetobacter baumannii AB059]
 gi|332854540|ref|ZP_08435418.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332870165|ref|ZP_08439077.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
 gi|332875103|ref|ZP_08442939.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6014059]
 gi|183209018|gb|ACC56416.1| GGDEF domain protein [Acinetobacter baumannii ACICU]
 gi|213055273|gb|ACJ40175.1| hypothetical protein AB57_1151 [Acinetobacter baumannii AB0057]
 gi|213987993|gb|ACJ58292.1| WspR [Acinetobacter baumannii AB307-0294]
 gi|260408999|gb|EEX02302.1| WspR [Acinetobacter baumannii ATCC 19606]
 gi|322507304|gb|ADX02758.1| GGDEF domain protein [Acinetobacter baumannii 1656-2]
 gi|323517323|gb|ADX91704.1| GGDEF domain protein [Acinetobacter baumannii TCDC-AB0715]
 gi|332727949|gb|EGJ59344.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332732432|gb|EGJ63688.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
 gi|332736720|gb|EGJ67711.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6014059]
          Length = 420

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 95/184 (51%), Gaps = 13/184 (7%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEK--LSIVFF 134
           L  I+  IL+   I  + +  LS+ D L+ + N   F      +      EK  L+++F 
Sbjct: 229 LAEINEQILR---IEASELLHLSQQDALTQISNRRTFDEMFDFFYYRANQEKRPLAVLFI 285

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK  ND +GH +GDKVI+ ++  +        FV R GGEEF      +  Q A  
Sbjct: 286 DIDFFKNYNDFYGHQMGDKVISSIAAAIKNSIRHVDFVARYGGEEFVVLLPETPAQGAYS 345

Query: 195 LANDLRKIIENSQI-NISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSG 251
           +A ++ K IE   I + +S  S ++TIS G  +     K     +I+ ADQALY AK+ G
Sbjct: 346 VAANIYKAIERQAIPHAASLVSKYVTISLGFTVYTGGLKMGQDRLIHAADQALYRAKQLG 405

Query: 252 RNRV 255
           RN++
Sbjct: 406 RNQI 409


>gi|184157028|ref|YP_001845367.1| response regulator [Acinetobacter baumannii ACICU]
 gi|239501295|ref|ZP_04660605.1| response regulator [Acinetobacter baumannii AB900]
 gi|260555649|ref|ZP_05827869.1| response regulator [Acinetobacter baumannii ATCC 19606]
 gi|332872603|ref|ZP_08440571.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6014059]
 gi|183208622|gb|ACC56020.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Acinetobacter baumannii ACICU]
 gi|260410560|gb|EEX03858.1| response regulator [Acinetobacter baumannii ATCC 19606]
 gi|322506927|gb|ADX02381.1| Diguanylate cyclase [Acinetobacter baumannii 1656-2]
 gi|323516794|gb|ADX91175.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332739132|gb|EGJ69991.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6014059]
          Length = 473

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 9/158 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+  L    F+ S+    EK+       +    D+D+FK++ND++GH +GD+ +    
Sbjct: 312 DELTSSLTRRQFLQSVRLLQEKVQKENKTSAFFMLDVDHFKKVNDSYGHLIGDRALQTCV 371

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +  +      +GR GGEEFA     ++ + A  LA  +R  I    I +     I + 
Sbjct: 372 TTIQNILHPHDLLGRFGGEEFAIFIPDTTREAAFELAERIRIQISQQPIYVYGKLPIFVQ 431

Query: 220 ISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S GI+     +   I ++   AD ALY AK+ GRNRV
Sbjct: 432 VSIGISLYSPSYHRSIESLFKEADDALYQAKRQGRNRV 469


>gi|70730957|ref|YP_260698.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5]
 gi|68345256|gb|AAY92862.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5]
          Length = 366

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 112/224 (50%), Gaps = 22/224 (9%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVE--NLSLVIISITISLLLGY----ISGSILKELFISY 97
           F++ IF+ ++ L PF+     L E   L +++ ++ +S L  Y    +  + L    +S 
Sbjct: 139 FVSAIFITWLVLNPFWRTSTTLQELKGLLVLVYALFLSALTLYSFITLRRARLHNYIMSK 198

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVG 151
             + Q + +D L+ + N  +F++  G   + L       +   DID FK++ND +GH +G
Sbjct: 199 LLLDQ-AYLDTLTEIPNRRSFMARAGQRLQALPREHDHYLAMVDIDNFKKVNDVYGHDIG 257

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++  +  V     +  RLGGEEFA         +   LA  L +++ +      
Sbjct: 258 DEVLKRIAADIKGVMRDFDY-ARLGGEEFAIYLADVPRADVEALATRLCQVVRDQ----- 311

Query: 212 SGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             P+ H +TIS G+A     E ++  + +ADQALY +K  G++R
Sbjct: 312 --PTRHPVTISMGLARVEPGETLNQALIKADQALYESKHGGKDR 353


>gi|42527191|ref|NP_972289.1| GGDEF domain-containing protein [Treponema denticola ATCC 35405]
 gi|41817615|gb|AAS12200.1| GGDEF domain protein [Treponema denticola ATCC 35405]
          Length = 987

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 87/174 (50%), Gaps = 12/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQI 142
           K+L  +  +++ LS +D L+G+ N    + ++G           + +S++  DID FKQ 
Sbjct: 808 KDLISANEQLTVLSTVDELTGVGNRRQ-LDTVGKDLWRRGLDNKQPISLIMIDIDLFKQY 866

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD V+  ++  L         FVGR GGEEF      SS  E   +A  LR 
Sbjct: 867 NDLYGHQAGDNVLRTVAQTLQKKLRAKYDFVGRYGGEEFLVLLYNSSASETMKIAEKLRI 926

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRN 253
            I+N  I  S+     +TIS G         +S  T++  AD ALY AK+SGR+
Sbjct: 927 EIKNLNIEHSAEKDKILTISLGAYTSVPNNELSYETMLSFADSALYKAKESGRD 980


>gi|95928551|ref|ZP_01311298.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95135341|gb|EAT16993.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 526

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 114/235 (48%), Gaps = 22/235 (9%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYI--LVENLSLVIISITISL-LLGYISGSI 89
           +FF +FI T++ +        G T F+ L+ +  L E+L L +   T +L  L       
Sbjct: 295 LFFCVFILTLMSL-------FGGTGFF-LKQVRSLQESLELKVAKRTSALQALNETLSLE 346

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           ++E   +   + +LS  D L+G+ N   F        S+       LS++  DID FK  
Sbjct: 347 IQERKKAQRALKELSEKDVLTGIYNRRKFNTYYETEWSAARREGRVLSLLMIDIDLFKIY 406

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD+ +  ++  L      P  FV R GGEEF      +S+Q A  LA  +R+
Sbjct: 407 NDRYGHLAGDQALHQVAITLNQTVSRPRDFVARYGGEEFICLLPETSQQAAVQLAETMRQ 466

Query: 202 IIENSQ-INISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRN 253
            +E+   I+  S  +  IT+S G+A       +    +I  AD+ALY+AK+ GRN
Sbjct: 467 HVEDLHYIHEFSDTANVITVSIGVASVIPEKNQAKEELIDLADKALYLAKRDGRN 521


>gi|296273131|ref|YP_003655762.1| serine/threonine protein kinase [Arcobacter nitrofigilis DSM 7299]
 gi|296097305|gb|ADG93255.1| serine/threonine protein kinase [Arcobacter nitrofigilis DSM 7299]
          Length = 1646

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 11/168 (6%)

Query: 99   RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
            ++  LSR D L+ + N  AF   L    E+       +S++  D+D+FK+ ND +GH  G
Sbjct: 1478 KLDLLSRTDSLTSINNRRAFDECLEKNFEQAKRDKKPISLMICDVDFFKKYNDFYGHQKG 1537

Query: 152  DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-IN 209
            D  +  ++  L      P   V R GGEEFA     +++  A  +AN++   +  S+ I+
Sbjct: 1538 DDCLIKVAQTLKESLKRPNDSVSRYGGEEFAIILPDTNKIGAIKIANEIHNNLNKSKIIH 1597

Query: 210  ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              S  S ++TIS G++  E+ +      +I  AD+ALY AKKSGRN+ 
Sbjct: 1598 EKSEVSKYLTISIGVSTIEKFNTYDTKQLINSADKALYDAKKSGRNQT 1645


>gi|294635274|ref|ZP_06713775.1| putative sensor-type protein [Edwardsiella tarda ATCC 23685]
 gi|291091340|gb|EFE23901.1| putative sensor-type protein [Edwardsiella tarda ATCC 23685]
          Length = 1002

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 14/191 (7%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRI---DCLSGLLNHSAFISSLG-------SYNEKL 129
           +L+GY+   + +++  +   + QLS     D L+GL N  +F  +L         Y+++ 
Sbjct: 532 ILMGYVV--VFQDVSETRTLLRQLSYSALHDPLTGLPNRVSFEQALRRALRGAIEYHQRH 589

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            +VF D+DYFK INDN GH  GD+++  L+  +  +      + RLGG+EFA        
Sbjct: 590 VLVFLDLDYFKSINDNAGHAAGDRLLQDLAQLMRSLLRPQDTLARLGGDEFALILCDCEL 649

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAK 248
            +  ++ + L   I         G   HI  SAG+ +  H   ++   I +AD A Y AK
Sbjct: 650 SQGKLMVDQLIHEIAAYPFPW-QGQQYHIGASAGLTQLQHDNALADETINQADAACYQAK 708

Query: 249 KSGRNRVVCFS 259
             GR R  C S
Sbjct: 709 HRGRGRAFCHS 719


>gi|227013291|gb|ACP09501.1| GGDEF family protein [Vibrio cholerae O395]
          Length = 537

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%)

Query: 76  ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127
           + ISLLL YI    L+E      +   R ++L  +   D L+ + N   F   L    +E
Sbjct: 325 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 384

Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           K S  ++ FDID FKQIND++GH  GD  +  + D +           R GG+EFA  + 
Sbjct: 385 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 444

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
            + E         +RK++E   + +++   + +TIS G +  C + EP   I+   D  L
Sbjct: 445 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 502

Query: 245 YVAKKSGRNRV 255
           Y++K  GRNRV
Sbjct: 503 YLSKSKGRNRV 513


>gi|193076781|gb|ABO11498.2| GGDEF [Acinetobacter baumannii ATCC 17978]
          Length = 420

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 95/184 (51%), Gaps = 13/184 (7%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEK--LSIVFF 134
           L  I+  IL+   I  + +  LS+ D L+ + N   F      +      EK  L+++F 
Sbjct: 229 LAEINEQILR---IEASELLHLSQQDALTQISNRRTFDEMFDFFYYRANQEKRPLAVLFI 285

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK  ND +GH +GDKVI+ ++  +        FV R GGEEF      +  Q A  
Sbjct: 286 DIDFFKNYNDFYGHQMGDKVISSIAAAIKNSIRHVDFVARYGGEEFVVLLPETPAQGAYS 345

Query: 195 LANDLRKIIENSQI-NISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSG 251
           +A ++ K IE   I + +S  S ++TIS G  +     K     +I+ ADQALY AK+ G
Sbjct: 346 VAANIYKAIERQAIPHAASLVSKYVTISLGFTVYTGGLKMGQDRLIHAADQALYRAKQLG 405

Query: 252 RNRV 255
           RN++
Sbjct: 406 RNQI 409


>gi|315637474|ref|ZP_07892685.1| GGDEF domain protein [Arcobacter butzleri JV22]
 gi|315478264|gb|EFU68986.1| GGDEF domain protein [Arcobacter butzleri JV22]
          Length = 156

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 73/131 (55%), Gaps = 1/131 (0%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           ++S++F D+D FK+IND  GH  GD V+  +++ L         + R GGEEF  A + S
Sbjct: 27  EISVIFLDVDDFKRINDELGHQKGDLVLKRVANILSSGIRETDLLARWGGEEFIIALIDS 86

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
           S + + I+  +LRK IE   I +    S ++T S G+      E   +++ R D+A+Y +
Sbjct: 87  SLENSKIVCENLRKAIE-EDIELMEICSFNVTASFGLTMVKQLETKESVLIRVDEAMYKS 145

Query: 248 KKSGRNRVVCF 258
           K +G+N++   
Sbjct: 146 KNNGKNKITVL 156


>gi|258624398|ref|ZP_05719345.1| GGDEF family protein [Vibrio mimicus VM603]
 gi|258583245|gb|EEW08047.1| GGDEF family protein [Vibrio mimicus VM603]
          Length = 371

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 17/181 (9%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIV--FFDIDYFKQIN 143
           K+ + +  ++  LS  D L+GL N    +  L      S  +K   V    D+D FK++N
Sbjct: 193 KQFYQANRQLEALSLTDSLTGLPNRRKAMHQLALHWNLSREQKKPFVCVMIDVDGFKEVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D++GH +GDKV+  ++  L   F     V RLGG+EF A    +       +A  +   +
Sbjct: 253 DSYGHDIGDKVLTIIAHALKDHFRNDDLVCRLGGDEFLAICPNTDAVSEVHIAEHVCDEV 312

Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           E  +I +  G     ++S G+AE     + H E    ++  ADQA+Y+AK +G+NRV  F
Sbjct: 313 ELLEIPV-EGIHWQGSVSMGVAEFDPSMKDHHE----LLRAADQAVYLAKNNGKNRVCAF 367

Query: 259 S 259
           +
Sbjct: 368 N 368


>gi|188591943|ref|YP_001796541.1| diguanylate cyclase [Cupriavidus taiwanensis LMG 19424]
 gi|170938317|emb|CAP63302.1| putative diguanylate cyclase (GGDEAF) and c-di-GMP
           phosphodiesterase (EAL domain) with Chase and PAS
           domains [Cupriavidus taiwanensis LMG 19424]
          Length = 1064

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 93/169 (55%), Gaps = 11/169 (6%)

Query: 100 ISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  L+  D L+GL N +       A +    +  E+++++  D+D+FK+IND+ GHPVGD
Sbjct: 617 IRHLALHDPLTGLPNRAELGERAQALLLQARTRGERVALLLLDLDHFKRINDSLGHPVGD 676

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS 211
            V+  ++D++         V R+GG+EF     G   + EA ++A  ++  + N ++ ++
Sbjct: 677 DVLRTMADRIKGTVRQGDLVARMGGDEFGVVLGGLRHDSEAELIAAKIQARV-NEEL-VA 734

Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            G  + +T S G+A      + ++ ++  AD A+Y AK+ GR R+  F+
Sbjct: 735 GGQRLRVTPSVGMAVFPDDGDTLTELLKSADSAVYAAKQGGRARLCRFA 783


>gi|119775516|ref|YP_928256.1| GGDEF family protein [Shewanella amazonensis SB2B]
 gi|119768016|gb|ABM00587.1| GGDEF family protein [Shewanella amazonensis SB2B]
          Length = 649

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 87/175 (49%), Gaps = 21/175 (12%)

Query: 98  NRISQLSRIDCLSGLLNHS--------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           N+  +L++ D L+G  N +        A I  + +  E  + V  D+D FK+IND FGH 
Sbjct: 406 NKYMRLAQRDGLTGTYNRATGQEKGENALIGCM-ARGEPTAAVLLDLDNFKRINDEFGHA 464

Query: 150 VGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GD    KV+  +  QL         + R GGEEF     G S  +A  +A   R+ I  
Sbjct: 465 TGDWTLKKVVEVIRPQLA----DDHILCRFGGEEFMLILPGLSGAQAVEVAERCREAI-- 518

Query: 206 SQINIS-SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           + +N   SG S  +T S G+ E  H +  +  +I RAD ALY AK  GRNRVV +
Sbjct: 519 AGVNTHYSGHSFKLTASFGVTEWQHGDLSLDPMIKRADLALYRAKHLGRNRVVSY 573


>gi|134293814|ref|YP_001117550.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
 gi|134136971|gb|ABO58085.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
          Length = 492

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 14/193 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128
           I +S++LG    + L+    + + +  L+R D L+GL N  +F   L     +       
Sbjct: 300 IAVSVMLG----AQLRHRMRAESELVLLARTDGLTGLGNRRSFAEVLEREWRRARRARSV 355

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187
            S++F D+D FK  ND +GH  GD  +A ++  +      P+    R GGEEF      +
Sbjct: 356 FSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGDNIRRPVDSAARYGGEEFVVLLPDT 415

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALY 245
            E  AA +A  +R  I+   +        H+T S G+A       E    +I  AD+ALY
Sbjct: 416 PEPGAARIAERIRAAIDELALEHVGSEHGHVTASIGLASWTPERDEEADNMIKAADRALY 475

Query: 246 VAKKSGRNRVVCF 258
            A  +GRN+V  F
Sbjct: 476 RANATGRNKVAAF 488


>gi|262275547|ref|ZP_06053357.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Grimontia
           hollisae CIP 101886]
 gi|262220792|gb|EEY72107.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Grimontia
           hollisae CIP 101886]
          Length = 498

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121
           LS+ I S +     G I+  I++++   + R+   S  D L+G+ N           +  
Sbjct: 296 LSIAISSFSFEEHQGSIA--IIRDI-TDFKRLESDSMHDALTGVYNRRHIEERFEDEVKR 352

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              Y   LS++  D+D FK +ND  GH  GDK +   ++ L         +GR GG+EF 
Sbjct: 353 AKRYARALSLLVVDLDNFKNLNDTEGHRAGDKGLVVAAEHLRSQLRKHDHIGRWGGDEFV 412

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPIST---II 237
                    +A  +A  +R+  E  Q      P  H +T+S G+A       + T   + 
Sbjct: 413 VICPELDRADAIEIAERIRRRFEAQQF-----PWCHKMTMSIGVASLSPDTSVMTPRDLF 467

Query: 238 YRADQALYVAKKSGRNRVVCFSDIEN 263
             ADQALY+AK+ GRNRV  F D++ 
Sbjct: 468 EEADQALYLAKERGRNRVEHFFDLQR 493


>gi|149182127|ref|ZP_01860610.1| adenylate/guanylate cyclase [Bacillus sp. SG-1]
 gi|148850159|gb|EDL64326.1| adenylate/guanylate cyclase [Bacillus sp. SG-1]
          Length = 642

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 13/170 (7%)

Query: 98  NRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
            ++  LS  D L+ + N        H A+ ++L +    +++++ DIDYFK  ND +GH 
Sbjct: 460 EKLKNLSYRDQLTQIPNRRYFDEKYHEAWDAALMN-KSPIAVMYLDIDYFKLYNDTYGHE 518

Query: 150 VGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            GD+ +  ++  +  ++     FV R+GGEEF A  L  S +    LA   R +IE   I
Sbjct: 519 AGDECLKLVAQSIEEIIQSCDGFVARMGGEEFIAVLLNQSPESIYQLAEKCRTMIEGLNI 578

Query: 209 ---NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              N      + ++I A ++    K   + +I  AD+ LY AK++GRN +
Sbjct: 579 PHENSKVSNRVTLSIGAAMSVANAKGKAADLISEADECLYEAKENGRNSI 628


>gi|145298909|ref|YP_001141750.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851681|gb|ABO90002.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 432

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 8/155 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N   F       +     +   +S++  DID+FKQ+ND  GH  GD+ I  L 
Sbjct: 268 DPLTGIANRRRFDELVKQEVQRCQRFGHTMSLLLLDIDHFKQVNDTHGHQQGDQAILSLV 327

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            ++         +GR GGEEF      +S   A   A  +R  I +    + +   I +T
Sbjct: 328 RRIAKQLREVDILGRWGGEEFIILLPETSLDLAWASAERIRLAIASESHPLGADIEIPLT 387

Query: 220 ISAGI-AERCHKEPISTIIYRADQALYVAKKSGRN 253
           +S GI A +  ++ +  ++ RAD ALY+AKK GRN
Sbjct: 388 VSIGISASQGPQDNVDNMVRRADTALYLAKKQGRN 422


>gi|71281070|ref|YP_267881.1| GGDEF/EAL domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71146810|gb|AAZ27283.1| GGDEF/EAL domain protein [Colwellia psychrerythraea 34H]
          Length = 637

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 5/165 (3%)

Query: 99  RISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +I +LS +D L+GL N +AF+    ++L S N+  +++F D+D FK+IND+ GH  GD++
Sbjct: 206 KIYELSNLDSLTGLYNRTAFLKHLKTALASSNKPFALLFIDLDGFKKINDSIGHQAGDQI 265

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   +++L         + R GG+EF      + E  A  ++  L +++        S  
Sbjct: 266 LKKSAERLKQWSFDTKLLCRWGGDEFLMVLADTDEVSAVGVSKQLIEVLSAPHNTEHSVL 325

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           S+  TI   +    H +    +I  AD A+Y  KK  R+ V  FS
Sbjct: 326 SVGATIGIALYPE-HAKTEDRLIQSADMAMYYQKKQARSTVGVFS 369


>gi|332140752|ref|YP_004426490.1| response regulator receiver modulated diguanylate cyclase
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550774|gb|AEA97492.1| response regulator receiver modulated diguanylate cyclase
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 653

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 3/170 (1%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHP 149
           L+I+  +   L+  D L+G L   A + SL    +  S   +   D+D FK+IND  GH 
Sbjct: 483 LWIAKRQSDTLAERDSLTGALTRRAMLKSLKKALKSDSTSCVALLDVDNFKKINDKHGHL 542

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+V+  L+  +         + R GGEEF      + +Q A  + ++L   +   ++ 
Sbjct: 543 VGDEVLTTLTRTIQKRIRKSDKLCRYGGEEFLIYFSDTDQQSAKRILDELNASLSRQKLW 602

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +     ++ S+G+ +   +  + TII   D  LY AK+ GR RV  FS
Sbjct: 603 SGTDQKFSVSFSSGLLDVNGETNLDTIIKACDDLLYKAKREGRARVAAFS 652


>gi|262377222|ref|ZP_06070447.1| WspR protein [Acinetobacter lwoffii SH145]
 gi|262307960|gb|EEY89098.1| WspR protein [Acinetobacter lwoffii SH145]
          Length = 568

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 88/162 (54%), Gaps = 10/162 (6%)

Query: 99  RISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152
           R+  ++  D L+GL N  A   +I  + +   +LS   ++  DID+FKQ+ND +GH VGD
Sbjct: 405 RLKNIAHSDSLTGLANRFALEEYIRFMENQPGQLSQTCLMIIDIDHFKQVNDQYGHIVGD 464

Query: 153 KVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           +VI  ++++L   V  T + V R GG+EF         Q+A I+A+ +R  +    I  +
Sbjct: 465 QVIQLVAERLKANVRATDLLV-RYGGDEFLVLIENIQMQQALIVADKIRAEVVERYILTA 523

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            G  I I++S G+A         T++  AD AL+ AK  GRN
Sbjct: 524 LGDQIQISVSIGVA--IGAVSWMTLLSNADDALFKAKAKGRN 563


>gi|229523522|ref|ZP_04412927.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|229337103|gb|EEO02120.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
          Length = 527

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%)

Query: 76  ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127
           + ISLLL YI    L+E      +   R ++L  +   D L+ + N   F   L    +E
Sbjct: 315 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 374

Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           K S  ++ FDID FKQIND++GH  GD  +  + D +           R GG+EFA  + 
Sbjct: 375 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 434

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
            + E         +RK++E   + +++   + +TIS G +  C + EP   I+   D  L
Sbjct: 435 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 492

Query: 245 YVAKKSGRNRV 255
           Y++K  GRNRV
Sbjct: 493 YLSKSKGRNRV 503


>gi|225851296|ref|YP_002731530.1| diguanylate cyclase with PAS/PAC sensor [Persephonella marina
           EX-H1]
 gi|225646109|gb|ACO04295.1| diguanylate cyclase with PAS/PAC sensor [Persephonella marina
           EX-H1]
          Length = 427

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 90/171 (52%), Gaps = 13/171 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPV 150
            ++ +++  D L+ + N   F  ++      +Y E+  +S++  D+D+FK+ ND+FGH  
Sbjct: 254 RKLYEMTITDELTKVANRRFFQEAVEKELKRAYRERYPVSLLIVDVDHFKEYNDSFGHTA 313

Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD+ +  +++ L          V R GG+EF      +SE  A  +A  +R  +E+  I 
Sbjct: 314 GDRCLCSVAEILKKYRKRSYDLVARYGGDEFIVVLPKASEDYAMNVAQMIRSDVEDLCIK 373

Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               P   +T+S G+A    +R     +  +I  AD+ALY+AKK GRNRVV
Sbjct: 374 -HIEPFNRVTVSIGVAVLNGKRIKGVTVKNLINTADKALYIAKKEGRNRVV 423


>gi|167583687|ref|ZP_02376075.1| diguanylate cyclase (GGDEF domain) [Burkholderia ubonensis Bu]
          Length = 315

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 9/179 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           + +E   +  ++ + +  D L+G+ N   F   L         Y   LS++ FD+D+FK 
Sbjct: 138 MQREREEAVAKLREHANCDGLTGIANRRFFEERLRDEFARWQRYGGNLSVLLFDLDHFKT 197

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH VGD V+  ++ ++  +        R GGEEFA     +   EA ++A  +R 
Sbjct: 198 INDRFGHAVGDAVLREMALRVAGIVRAQDTFCRFGGEEFALLLPCTDLAEAMLVAEKVRC 257

Query: 202 IIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I  + ++ + G  + +T S G A      +    ++  AD ALY AK+ GR+R V ++
Sbjct: 258 AIGVTPVD-AEGVRVPVTASVGGASAHAGAQACDVLVNEADAALYRAKRLGRDRSVAYA 315


>gi|217973294|ref|YP_002358045.1| PAS/PAC sensor-containing diguanylate cyclase [Shewanella baltica
           OS223]
 gi|217498429|gb|ACK46622.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica OS223]
          Length = 346

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 98/203 (48%), Gaps = 39/203 (19%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGH 148
           +   +++L+  D L+G+ N   F   L    ++LS       +V  DID FK +ND +GH
Sbjct: 138 AQTELNRLALTDELTGIANRRHFFQQLEHEIKRLSRLQLPLCLVMMDIDNFKLVNDRYGH 197

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFA--------AAALGSSEQEAAILAN-D 198
            VGDK++   + Q +     P  + GRLGGEEFA         AA     +  + LAN D
Sbjct: 198 QVGDKILQHFT-QFISARTRPYDIFGRLGGEEFALLLPETTVDAAQKIVMRMMSSLANED 256

Query: 199 LRKIIENSQINISSGPS------IH--ITISAGIAE------------RCHKEPISTIIY 238
           +  I+ + Q   S+G S      IH  I  SA IA+            +C  +    ++ 
Sbjct: 257 ISAIVADFQYQFSAGVSALTPVIIHHGIDNSADIADVEQVALPVEIGSQCRSDA-EKLVA 315

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
            AD+ALY AK  GRNRVV + D+
Sbjct: 316 EADKALYQAKTLGRNRVVIWDDV 338


>gi|126641116|ref|YP_001084100.1| GGDEF [Acinetobacter baumannii ATCC 17978]
          Length = 390

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 95/184 (51%), Gaps = 13/184 (7%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEK--LSIVFF 134
           L  I+  IL+   I  + +  LS+ D L+ + N   F      +      EK  L+++F 
Sbjct: 199 LAEINEQILR---IEASELLHLSQQDALTQISNRRTFDEMFDFFYYRANQEKRPLAVLFI 255

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK  ND +GH +GDKVI+ ++  +        FV R GGEEF      +  Q A  
Sbjct: 256 DIDFFKNYNDFYGHQMGDKVISSIAAAIKNSIRHVDFVARYGGEEFVVLLPETPAQGAYS 315

Query: 195 LANDLRKIIENSQI-NISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSG 251
           +A ++ K IE   I + +S  S ++TIS G  +     K     +I+ ADQALY AK+ G
Sbjct: 316 VAANIYKAIERQAIPHAASLVSKYVTISLGFTVYTGGLKMGQDRLIHAADQALYRAKQLG 375

Query: 252 RNRV 255
           RN++
Sbjct: 376 RNQI 379


>gi|187478626|ref|YP_786650.1| signaling protein [Bordetella avium 197N]
 gi|115423212|emb|CAJ49743.1| putative signaling protein [Bordetella avium 197N]
          Length = 450

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 8/168 (4%)

Query: 97  YNRISQL-SRIDCLSGLLNHS---AFISSLGSYNEK----LSIVFFDIDYFKQINDNFGH 148
           + R S L S  D L+ LLN       +S   +Y  K    L+++  D+D+FK++ND  GH
Sbjct: 280 FERASHLESGRDTLTHLLNRKYLHVVMSKEVAYARKTSSPLAVLMVDVDHFKRVNDEHGH 339

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+  +   +        +  RLGGEEF    + ++  +A  +A +LR+ I    +
Sbjct: 340 DAGDLVLQQVGGMIATYSRGGDYTFRLGGEEFLVVLVDATATQALNIAENLRQRIAEKPL 399

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  G    I++S G+A          ++ RAD ALY AK  GRN  V
Sbjct: 400 TLPDGLHRRISVSIGVAAHDSHPDYQRLLKRADIALYAAKTRGRNTCV 447


>gi|117921874|ref|YP_871066.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117614206|gb|ABK49660.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 483

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 9/146 (6%)

Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           H A  S+ G+    + +V  DID+FK+IND  GH VGD ++  LS  L         V R
Sbjct: 344 HRAAASTQGA----ICLVMLDIDFFKEINDTLGHSVGDTILMELSSVLQHCVRESDVVAR 399

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
            GGEEF      +S +    L   +   I  S+ + S    + +T S GIA+    EP+ 
Sbjct: 400 WGGEEFVILCHNTSLEAVKSLCQRITTAI--SEYHFSG--DVQLTCSFGIAKLAANEPMQ 455

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSD 260
           +   RAD+ALY AK  GR++ +C  D
Sbjct: 456 SCFERADKALYQAKALGRDQ-ICVDD 480


>gi|330879018|gb|EGH13167.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 493

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 92/191 (48%), Gaps = 11/191 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGS 124
           LS+V+  I +  L+  +  S   +L ++      L+R D LSGLLN   F    ++ L  
Sbjct: 30  LSMVVPFILLKRLMQRLQTSY-NDLLVAQALSDSLARHDLLSGLLNRRVFNEQLVARLQQ 88

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAA 183
            + + ++   D+D FK IND  GH VGD  I  +++ L     G    V RLGG+EF+ A
Sbjct: 89  KSTQTAVFLIDLDKFKLINDTHGHAVGDAAICAVAESLRDATTGWQALVARLGGDEFSLA 148

Query: 184 ALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRAD 241
             G   Q E A LA ++   I  S   +   P + ++ + G+A           ++ RAD
Sbjct: 149 VSGDFSQFELAALAENVLAKIAMSSAGL---PRVTLSATLGVAISPLDGSDAEVLLQRAD 205

Query: 242 QALYVAKKSGR 252
            A+Y  K  GR
Sbjct: 206 SAMYRGKNGGR 216


>gi|310778016|ref|YP_003966349.1| diguanylate cyclase with PAS/PAC sensor [Ilyobacter polytropus DSM
           2926]
 gi|309747339|gb|ADO82001.1| diguanylate cyclase with PAS/PAC sensor [Ilyobacter polytropus DSM
           2926]
          Length = 763

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 11/164 (6%)

Query: 103 LSRIDCLSGLLNHSAF------ISSLGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+G+ N   F      I      N+K +SI+  DID FK  ND++GH  GD+ +
Sbjct: 598 LSIKDSLTGIYNRRGFEEMSERIFKESLRNKKNVSIIMLDIDKFKLYNDHYGHQAGDECL 657

Query: 156 AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSG 213
             ++++L      P   VGR GGEEF      ++ + A  +A  +RK IEN +I ++ S 
Sbjct: 658 KKIAEKLEKSCKRPSDIVGRYGGEEFIIFLPDTTLEGARTVAEKIRKNIENMEIEHVKSR 717

Query: 214 PSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRV 255
               +T+S GI+     ++  +  +I +AD+ LY AK+ GRNRV
Sbjct: 718 HGGVVTVSLGISATVPNNEYEMEKLIGKADKMLYQAKELGRNRV 761


>gi|307727776|ref|YP_003910989.1| diguanylate cyclase [Burkholderia sp. CCGE1003]
 gi|307588301|gb|ADN61698.1| diguanylate cyclase [Burkholderia sp. CCGE1003]
          Length = 502

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 17/179 (9%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQI 142
           L++  ++ +R+++L++ D L+GL N  A    L +  E+L       S++F D D+FKQ 
Sbjct: 318 LRDRALAEDRLTELTQTDSLTGLKNRRALDEVLRNEWERLERNESCLSVLFLDADHFKQY 377

Query: 143 NDNFGHPVGDKVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           ND  GH  GDK +  L+    Q     G      R GGEEF      +S  +A ++A  +
Sbjct: 378 NDKHGHAEGDKALRHLAKCITQRARRRGD--CAARYGGEEFVVVLPDTSSADALLIAEGI 435

Query: 200 RKIIENSQINISSGPSIHI---TISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
           R+ +E S      G    +   T+S G A     H   +  +   AD A+Y AK++GR+
Sbjct: 436 RETLEKSWQVQHGGEKAGLHAFTVSIGCATGRPGHGATLEQLTKLADLAIYEAKRAGRD 494


>gi|260554189|ref|ZP_05826447.1| WspR [Acinetobacter sp. RUH2624]
 gi|260404695|gb|EEW98207.1| WspR [Acinetobacter sp. RUH2624]
          Length = 409

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 91/177 (51%), Gaps = 17/177 (9%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           EL     ++S LS+ D L+GL N      +L +       +   L+I+  DID+FK  ND
Sbjct: 222 ELMQQAQQLSLLSQQDALTGLANRRYLDETLDNEWRRALRHETPLTIMMVDIDFFKPYND 281

Query: 145 NFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAI----LANDL 199
             GH  GD+ +  ++  +  +   +   V R GGEEF      ++ Q+A I    L N +
Sbjct: 282 TLGHLKGDQCLKDIATAISSIAARSGDLVARYGGEEFLLLFPMTNAQQAQIQVERLMNAI 341

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254
           +KI   + ++  S  S ++TIS G+A    +  + IS  + RAD ALY AK +GRN+
Sbjct: 342 KKI---AIVHPCSSVSPYVTISVGVATTIPRLNDSISAFVSRADHALYQAKTNGRNQ 395


>gi|260843270|ref|YP_003221048.1| putative diguanylate cyclase [Escherichia coli O103:H2 str. 12009]
 gi|300819391|ref|ZP_07099588.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
 gi|300925278|ref|ZP_07141172.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|301327127|ref|ZP_07220400.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|257758417|dbj|BAI29914.1| predicted diguanylate cyclase [Escherichia coli O103:H2 str. 12009]
 gi|300418584|gb|EFK01895.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|300527987|gb|EFK49049.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
 gi|300846249|gb|EFK74009.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|323163795|gb|EFZ49610.1| diguanylate cyclase domain protein [Escherichia coli E128010]
 gi|324019148|gb|EGB88367.1| diguanylate cyclase domain protein [Escherichia coli MS 117-3]
          Length = 452

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +         + R+GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 404

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 405 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 441


>gi|116253904|ref|YP_769742.1| transmembrane sensory box GGDEF/EAL family protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115258552|emb|CAK09656.1| putative transmembrane sensory box GGDEF/EAL family protein
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 737

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 114/227 (50%), Gaps = 26/227 (11%)

Query: 50  LFYIGLTP----FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR 105
           L +I  +P    +  +  ++++ L LV +   + L++G+++G  LK      N   + + 
Sbjct: 248 LVWISRSPGDIGYAQVRPMVIQALGLVGLFFVVLLVIGWLAGRRLK---AEENSAREEAL 304

Query: 106 IDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D LSGL N          F+         + +++ D+D FK++ND++GH  GD++I  +
Sbjct: 305 RDRLSGLSNRDGLGLAVDRFVVEARQTKRNVLLLYLDLDGFKEVNDSYGHGTGDQLIRAV 364

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LAND----LRKIIENSQINISSG 213
           +  L V+      + R+GG+EFA A L  SE  AA+ LA      L + +E  +  +  G
Sbjct: 365 AAGLDVLIPQGAVLARIGGDEFAIAFLSDSENAAALQLAEQILDFLVEPLEIGRRVVVVG 424

Query: 214 PSIHITIS-AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            SI I +S +G   R        ++ R+D A+Y AK++GR R+  + 
Sbjct: 425 ASIGIAMSPSGTIGR------EELVRRSDLAMYKAKEAGRARMTLYD 465


>gi|24374900|ref|NP_718943.1| sensory box protein [Shewanella oneidensis MR-1]
 gi|24349604|gb|AAN56387.1|AE015775_4 sensory box protein [Shewanella oneidensis MR-1]
          Length = 879

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 10/174 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148
           S  +++ L+  D L+ L N    +  L          N +L+ VF D+D FK IND+FGH
Sbjct: 444 SEAQLAHLAYFDPLTHLPNRMKLMIQLKQEIMHAKRLNSQLATVFIDVDLFKHINDSFGH 503

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQ 207
            +GD+++  L+ +L         + R+G +EF A   G    E A  A N LR++ E   
Sbjct: 504 SIGDEMLVELAKRLRSQLQEQDVLSRIGSDEFVALISGIQYHEDATAAINQLRQVFEQPF 563

Query: 208 INISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + +S+G  + +T + G++          T++  AD A+Y AK  GRN    +++
Sbjct: 564 V-VSTGDHLRLTATMGVSLYPSDGSNADTLLRNADAAMYRAKSEGRNNYAFYTE 616


>gi|330820697|ref|YP_004349559.1| diguanylate cyclase [Burkholderia gladioli BSR3]
 gi|327372692|gb|AEA64047.1| diguanylate cyclase [Burkholderia gladioli BSR3]
          Length = 562

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFK 140
           S ++E      ++ + ++ D L+ L N  AF  + G    + +       ++  D+D+FK
Sbjct: 381 SRMRERASLAEKLKRQAQTDALTKLFNRRAF-ETFGQIKLRGADPAGQPFLILLDLDHFK 439

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND FGHPVGD V+  ++D L         V R GGEEF           A  LA  L 
Sbjct: 440 SINDRFGHPVGDGVLVKVADALASQVRPGDLVARFGGEEFVVLLHAVDVAAALSLAERLL 499

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             I    +  + G ++ +T S G+A    +  +  ++  AD ALY AK+ GR+R+  F
Sbjct: 500 AAIRAVAVFAADGTAVPVTASLGVAS-GSQLSLRQLLSHADLALYEAKRLGRDRIRMF 556


>gi|311696320|gb|ADP99193.1| two-component response regulator [marine bacterium HP15]
          Length = 567

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 84/171 (49%), Gaps = 12/171 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++S L   D L+GLL HS     L         +    S+   D+DYFKQ+ND +GH  
Sbjct: 397 RQLSDLMNRDSLTGLLKHSLIKQELEKELARCRRFGHLSSVAMIDLDYFKQVNDTWGHRY 456

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQIN 209
           GD VI  L++ L         +GR GGEEF       S Q AA L   L+ I E+ S++ 
Sbjct: 457 GDIVIRALANLLRNRLRETDMIGRYGGEEFMVVLPDCSVQAAADL---LKSIGESFSELV 513

Query: 210 ISSG-PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + G  +  +T+SAGIA        +  +  ADQALY  K  GRN V  +S
Sbjct: 514 FAVGEKNFQVTLSAGIAGVNEFPSGAEALEAADQALYQCKHEGRNGVAIYS 564


>gi|304408789|ref|ZP_07390410.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica OS183]
 gi|307302792|ref|ZP_07582547.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica BA175]
 gi|304352610|gb|EFM17007.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica OS183]
 gi|306913152|gb|EFN43574.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica BA175]
          Length = 346

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 98/203 (48%), Gaps = 39/203 (19%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGH 148
           +   +++L+  D L+G+ N   F   L    ++LS       +V  DID FK +ND +GH
Sbjct: 138 AQTELNRLALTDELTGIANRRHFFQQLEHEIKRLSRLQLPLCLVMMDIDNFKLVNDRYGH 197

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFA--------AAALGSSEQEAAILAN-D 198
            VGDK++   + Q +     P  + GRLGGEEFA         AA     +  + LAN D
Sbjct: 198 QVGDKILQHFT-QFISARTRPYDIFGRLGGEEFALLLPETTVDAAQKIVMRMMSSLANED 256

Query: 199 LRKIIENSQINISSGPS------IH--ITISAGIAE------------RCHKEPISTIIY 238
           +  I+ + Q   S+G S      IH  I  SA IA+            +C  +    ++ 
Sbjct: 257 ISAIVADFQYQFSAGVSALTPVIIHHGIDNSADIADVEQVALPVETGSQCRSDA-EKLVA 315

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
            AD+ALY AK  GRNRVV + D+
Sbjct: 316 EADKALYQAKTLGRNRVVIWDDV 338


>gi|297564629|ref|YP_003683601.1| diguanylate cyclase [Meiothermus silvanus DSM 9946]
 gi|296849078|gb|ADH62093.1| diguanylate cyclase and serine/threonine protein kinase with TPR
           repeats [Meiothermus silvanus DSM 9946]
          Length = 560

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 79/164 (48%), Gaps = 10/164 (6%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +LS  D L+GL N       L         Y   LS+   D+D FKQIND   H VGD+
Sbjct: 399 ERLSLEDALTGLYNRRYLDGRLAEEFIRARRYQHPLSVAIADLDNFKQINDKLSHAVGDE 458

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS- 212
            +  ++  L         V R GGEEFA   L +SE++A  +   +R  I  ++   S+ 
Sbjct: 459 ALRTVARLLRQCCRETDLVARYGGEEFALVLLEASEEQARSICEKIRSAI--AEYPWSTV 516

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            P + +T+S G+      E    ++  AD+ LY AK  G+NRVV
Sbjct: 517 HPELKVTVSIGLCSDLGLESHQHMLAEADRNLYRAKHLGKNRVV 560


>gi|297578961|ref|ZP_06940889.1| GGDEF family protein [Vibrio cholerae RC385]
 gi|297536555|gb|EFH75388.1| GGDEF family protein [Vibrio cholerae RC385]
          Length = 537

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%)

Query: 76  ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127
           + ISLLL YI    L+E      +   R ++L  +   D L+ + N   F   L    +E
Sbjct: 325 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 384

Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           K S  ++ FDID FKQIND++GH  GD  +  + D +           R GG+EFA  + 
Sbjct: 385 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 444

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
            + E         +RK++E   + +++   + +TIS G +  C + EP   I+   D  L
Sbjct: 445 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 502

Query: 245 YVAKKSGRNRV 255
           Y++K  GRNRV
Sbjct: 503 YLSKSKGRNRV 513


>gi|119471574|ref|ZP_01613988.1| hypothetical GGDEF family protein [Alteromonadales bacterium TW-7]
 gi|119445517|gb|EAW26803.1| hypothetical GGDEF family protein [Alteromonadales bacterium TW-7]
          Length = 348

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 88/184 (47%), Gaps = 12/184 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS----YNEKLS------IVFFDIDYF 139
           +K+L  + N   + +  D L+G  N   F S +      Y+E+ +      ++ FDID+F
Sbjct: 165 IKDLKEALNLSKEAADTDPLTGFYNRGKFDSDINDFCREYSEQTTESSLAALIMFDIDHF 224

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+ ND+FGH  GD+VI  ++ ++           R GGEEF   A   +  +    A  +
Sbjct: 225 KRFNDDFGHQKGDEVIKLVAKKVKENLTDKAKAYRYGGEEFCITAYFDTINDLVAFAECI 284

Query: 200 RKIIENSQINISSGPSIHITISA--GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R+ I    I      +    ISA  G+A        S ++ RAD+ALY+AK  GRNRV  
Sbjct: 285 RQEIAKLAIRKKQDVNNKRAISASFGLAMLRPFTKSSVLVERADRALYIAKTHGRNRVEI 344

Query: 258 FSDI 261
             DI
Sbjct: 345 APDI 348


>gi|118589104|ref|ZP_01546511.1| putative diguanylate cyclase (GGDEF) [Stappia aggregata IAM 12614]
 gi|118438433|gb|EAV45067.1| putative diguanylate cyclase (GGDEF) [Stappia aggregata IAM 12614]
          Length = 353

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 78/135 (57%), Gaps = 2/135 (1%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  DID+FK+ ND +GH  GD+V+  ++  +           R GGEEFA     +  
Sbjct: 210 SLLMTDIDHFKKFNDTYGHQTGDQVLRLVALAVKQNIKAQDIACRYGGEEFAIILPHAEL 269

Query: 190 QEAAILANDLRKIIENSQ-INISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVA 247
           ++AA++  ++R  + + + +  S+G ++  +TIS GIA     +   +I+ RAD+ALY+A
Sbjct: 270 EDAAVIGENIRNAVMSKELVKRSTGENLGRVTISVGIATFESTDTAHSIVSRADEALYLA 329

Query: 248 KKSGRNRVVCFSDIE 262
           K +GRN V    ++E
Sbjct: 330 KNAGRNVVKTERELE 344


>gi|120612883|ref|YP_972561.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
 gi|120591347|gb|ABM34787.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
          Length = 395

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 105/201 (52%), Gaps = 24/201 (11%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYN 126
           ++  ++L+LG ++  ++     + +++  L++ D L+G+LN   F       ++    + 
Sbjct: 192 LAANVTLVLGTMA-VLVAWRTEAEDKLRALAKTDALTGVLNRRGFDVRGRALLAHALRHG 250

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA---AA 183
            +++ V  D+D+FK++ND  GH  GD V+AF +  L     T    GR+GGEEFA   A 
Sbjct: 251 LRVTAVMLDVDHFKRVNDTHGHGTGDHVLAFFARLLQDATRTGDVAGRIGGEEFAVLLAH 310

Query: 184 ALGSSEQEA------AILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EP-IS 234
           A G    E+      A LA D  + +    ++ S+G +   T+ AG+ +       P ++
Sbjct: 311 APGDRAAESFDRRLRARLAADSPQAV-GFPVSYSAGAA---TLEAGLPDPGAMAVAPLLA 366

Query: 235 TIIYRADQALYVAKKSGRNRV 255
            ++ RAD  LY AK++GR R+
Sbjct: 367 DLMARADATLYEAKRAGRGRL 387


>gi|229511287|ref|ZP_04400766.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229608047|ref|YP_002878695.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|229351252|gb|EEO16193.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229370702|gb|ACQ61125.1| GGDEF family protein [Vibrio cholerae MJ-1236]
          Length = 529

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%)

Query: 76  ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127
           + ISLLL YI    L+E      +   R ++L  +   D L+ + N   F   L    +E
Sbjct: 317 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 376

Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           K S  ++ FDID FKQIND++GH  GD  +  + D +           R GG+EFA  + 
Sbjct: 377 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 436

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
            + E         +RK++E   + +++   + +TIS G +  C + EP   I+   D  L
Sbjct: 437 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 494

Query: 245 YVAKKSGRNRV 255
           Y++K  GRNRV
Sbjct: 495 YLSKSKGRNRV 505


>gi|332534442|ref|ZP_08410281.1| putative two-component response regulator [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036095|gb|EGI72571.1| putative two-component response regulator [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 299

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 88/174 (50%), Gaps = 21/174 (12%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+ ID L+ + N      +L     +       LS++  DID+FK+ ND +GH  GD
Sbjct: 130 LEMLASIDGLTEIPNRRYLDENLAREWRRSKRSGTPLSVLLMDIDHFKRYNDCYGHRAGD 189

Query: 153 KVIAFLSDQLVVV--FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           + +  ++  L      G+  F+ R GGEEFAA   G  + EA   AN LR  +  + +NI
Sbjct: 190 ECLKDVAQALAAQCERGSD-FIARYGGEEFAAVLPGIDKHEALEFANKLRNAV--NALNI 246

Query: 211 SSGPSI---HITISAGIAE----RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               S+   HITIS GIA     + + E    ++  AD  LY AK +GR+R+V 
Sbjct: 247 EHKASLNADHITISIGIATTQSGKVYAE--QALLEEADLGLYAAKDAGRDRIVA 298


>gi|309778002|ref|ZP_07672944.1| putative GGDEF domain/EAL domain protein [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308914291|gb|EFP60089.1| putative GGDEF domain/EAL domain protein [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 453

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 8/163 (4%)

Query: 104 SRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           +++D  + +LN +AF + +       + NEK +    DID FK IND  GH VGD+VI  
Sbjct: 276 NKLDPFTEVLNKTAFRTHVLDVIRDKNKNEKGAFFILDIDNFKMINDTCGHLVGDQVIVE 335

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           ++  L         VGR+GG+EF    L   +Q   I  N  ++II+N +    +G   H
Sbjct: 336 VAANLQNNLREDDLVGRIGGDEF-CIYLQHIKQIDDIEKN-AQRIIDNIRTMQLTGYHRH 393

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +T+S GI     ++    I  +AD ALY AK +GR++ V + +
Sbjct: 394 LTVSMGICIVDAEKDFEDIFMKADHALYEAKANGRDQFVVYKN 436


>gi|255093223|ref|ZP_05322701.1| putative signaling protein [Clostridium difficile CIP 107932]
          Length = 284

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 123/282 (43%), Gaps = 37/282 (13%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIF-----FSI--FIATVIFIANIFLFYIGLTPFYG 60
           F  +W C    L+    +   ++  I      FS+  F  +VI     FLF     P  G
Sbjct: 3   FFCLWGCVITLLDQLGGNDLSVFSYIMLAAAAFSVLKFGESVIVFGGCFLFLNLFLP--G 60

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILK-ELFISYNRI---SQLSRIDCLSGLLNHS 116
           ++ I     S ++ +  I+ L  ++S  + +  +F  Y+++    Q   I  ++ LLN  
Sbjct: 61  IQTIPGNEFSNIVNTFFITSLAIFVSTMLYRNRVFTYYDKLLISQQYEEISHINNLLNDK 120

Query: 117 AFISSLGSYN-------------------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
                L   N                   E ++ +  DIDYFKQ NDN+GH  GD  +  
Sbjct: 121 VMTDDLTKMNNRRYLEDILQKKLISHANQEPITGMMIDIDYFKQFNDNYGHQKGDYCLQN 180

Query: 158 LSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
           ++ ++++ F +       R GGEEF        E +A + +  LRKIIE+        P 
Sbjct: 181 IA-KVILDFTSSENEHAIRYGGEEFFICIFNCDETDAKLKSECLRKIIESCNFERDDVPL 239

Query: 216 IHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
             +T+S G+  +  ++ I+    I   D+ALY AK+ GRN V
Sbjct: 240 KCVTVSIGVYTKKIEKAITLNEFISNCDKALYTAKEQGRNCV 281


>gi|117621295|ref|YP_855610.1| sensory box/GGDEF family protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562702|gb|ABK39650.1| sensory box/GGDEF family protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 738

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 98/194 (50%), Gaps = 9/194 (4%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEK 128
           + IS +I L++      I+  L  + + + +   ID L+GLLN   F   +S   + N++
Sbjct: 277 ICISTSIILIMRKKETHIIHALQKTVDELRKSKLIDPLTGLLNREGFKNILSEKCNSNKE 336

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
             + + D+D FK+IND  GH VGD V+   S ++  + G    V RLGG+EFA    G  
Sbjct: 337 FLVAYADLDKFKEINDFMGHAVGDLVLKISSARMSSILGMNSPVARLGGDEFAFVIPG-- 394

Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHK-EPISTIIYRADQALYV 246
             E ++     +++IE     I+ G  +  I IS G++   H+   +  ++ +AD A+Y 
Sbjct: 395 --EKSMALQRCQELIEKITQPIALGERTFSIGISIGVSSYPHQATALEELLDKADMAMYA 452

Query: 247 AKKSGRNRVVCFSD 260
           AK S     V F +
Sbjct: 453 AKCSHDRAPVYFEE 466


>gi|86357767|ref|YP_469659.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|86281869|gb|ABC90932.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
          Length = 753

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 15/180 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDN 145
           +L  +  R+  LS  D L+GL N   F+  + S        ++L ++  D+D FK+IND 
Sbjct: 310 KLVRARQRLEHLSLHDALTGLPNRR-FVDQMISQPPRPDPQDRLILIHIDLDRFKEINDT 368

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIE 204
            GH  GD V+   + +L  + G      R+GG+EF  A+  +  E +AA LA   R+I++
Sbjct: 369 KGHAGGDMVLQTTASRLADLTGPNDVAARIGGDEFVFASWSTDPEPKAAELA---RQIVD 425

Query: 205 NSQINI-SSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             Q  I   G    +  S G+A   E      +  ++  AD ALY AKK+GR R   F++
Sbjct: 426 ALQQTIFIDGAGYVVGASVGVAWETESARDRDLGQLLLNADLALYEAKKAGRGRAAVFTE 485


>gi|54307823|ref|YP_128843.1| putative c-di-GMP phosphodiesterase A-related protein
           [Photobacterium profundum SS9]
 gi|46912246|emb|CAG19041.1| putative c-di-GMP phosphodiesterase A-related protein
           [Photobacterium profundum SS9]
          Length = 679

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 17/182 (9%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           E  +   ++ QL   D L+GL N   F   + SL +    L +++ DID FK IND+ GH
Sbjct: 241 EHMMQQGQVEQLVHTDPLTGLYNRHGFSRRLESLITNETPLVMLYLDIDNFKNINDSLGH 300

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+V+  +S +L  +      +G LGG+EF    L   E + A        ++    I
Sbjct: 301 HIGDRVLQEISQRLRRLLPENAIIGHLGGDEF-GIVLSEPEHDRA------GDLVAQQVI 353

Query: 209 NISSGP------SIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           ++ + P      S H+  S G ++   +      ++  AD A+Y AK  GRNR+V F++ 
Sbjct: 354 SLINQPFDLHHFSKHLACSIGMVSYPGNGNDARILLQNADTAMYEAKNRGRNRLVKFNEA 413

Query: 262 EN 263
            N
Sbjct: 414 MN 415


>gi|332279786|ref|ZP_08392199.1| diguanylate cyclase [Shigella sp. D9]
 gi|332102138|gb|EGJ05484.1| diguanylate cyclase [Shigella sp. D9]
          Length = 320

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 15/161 (9%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 153 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 212

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216
           +         + R+GGEEF         + A  LA  +R+ +E     N +  I     +
Sbjct: 213 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQ--KV 270

Query: 217 HITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
            I+I A + +     P    IYR AD ALY AK++GRN+VV
Sbjct: 271 TISIGAVVTQENALNPNE--IYRLADNALYEAKETGRNKVV 309


>gi|310658000|ref|YP_003935721.1| hypothetical protein CLOST_0690 [Clostridium sticklandii DSM 519]
 gi|308824778|emb|CBH20816.1| membrane protein of unknown function [Clostridium sticklandii]
          Length = 652

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 85/163 (52%), Gaps = 11/163 (6%)

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S ID ++GL N            + +      LSI+  D+D+FK  ND +GH  GD  + 
Sbjct: 487 SLIDSMTGLANRRYLEQRIMYEYARMKRNWSNLSIIMIDVDFFKLYNDTYGHVQGDICLK 546

Query: 157 FLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGP 214
            ++  L   V      V R GGEEF      + +  A+ILA++++  IEN +I +++S  
Sbjct: 547 TIAATLRSTVKRQTDLVARYGGEEFVVLLPETDKYSASILADNIKTNIENLEIEHMTSTI 606

Query: 215 SIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
           S ++T+S GIA       +S   +I +AD ALY AKK GRN +
Sbjct: 607 SDYVTVSIGIATFTKDCNVSCEDLIQKADVALYQAKKIGRNSI 649


>gi|297519769|ref|ZP_06938155.1| putative diguanylate cyclase [Escherichia coli OP50]
          Length = 297

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 130 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 189

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +         + R+GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 190 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 249

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 250 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 286


>gi|270262480|ref|ZP_06190751.1| diguanylate cyclase [Serratia odorifera 4Rx13]
 gi|270043164|gb|EFA16257.1| diguanylate cyclase [Serratia odorifera 4Rx13]
          Length = 520

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 13/171 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +L+ +D L+GL N   F       ++        ++++  DIDYFKQ ND +GH  G
Sbjct: 346 RLEELALLDGLTGLANRRQFDIALKNELARAARNYRSVALLMLDIDYFKQYNDIYGHVAG 405

Query: 152 DKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D+ +  +   L  +   +   + R GGEE +     +  Q A I A+ + + +   +I  
Sbjct: 406 DQCLQQIGQMLKGLASRSNDIMARYGGEEMSIILPDTDAQGALIFADRVMQAVRELKIPH 465

Query: 211 SSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNRVVC 257
              P   IT+S GI  +     +  PI   I  AD ALY AKK G+NR+VC
Sbjct: 466 QGNPHGVITLSIGICAKVPHMYNDTPIG-FINMADSALYQAKKEGKNRIVC 515


>gi|226307763|ref|YP_002767723.1| hypothetical protein RER_42760 [Rhodococcus erythropolis PR4]
 gi|226186880|dbj|BAH34984.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
           PR4]
          Length = 768

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 89/186 (47%), Gaps = 17/186 (9%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
           GS + E+ +  + I ++ R+D L+G+ N  +F + L        +    L++   D+D F
Sbjct: 333 GSDVTEVKLQSDEIVRMGRVDALTGMPNRHSFWTELERLLRDPYTSESGLALAMLDLDNF 392

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILAN 197
           K +ND  GH VGD V+  ++D+L    G      RLGG+EFA     +G S Q   +L  
Sbjct: 393 KSVNDTLGHTVGDAVLREVADRLSEAGGMSQLFARLGGDEFAILFTDMGDSSQVRTLLGR 452

Query: 198 ---DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
               L + I  +   +  G SI   + A +     +     ++  AD AL+ AK+SGR  
Sbjct: 453 YIETLHEPITVAGTRLEIGCSIGYYLPAELPSSADE-----MMGAADLALFAAKESGRGA 507

Query: 255 VVCFSD 260
           V  + D
Sbjct: 508 VREYRD 513


>gi|254521982|ref|ZP_05134037.1| diguanylate cyclase [Stenotrophomonas sp. SKA14]
 gi|219719573|gb|EED38098.1| diguanylate cyclase [Stenotrophomonas sp. SKA14]
          Length = 512

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 85/183 (46%), Gaps = 20/183 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           E      R++  +  D L+G+LN     + L       G     LS+ F D+D FK+IND
Sbjct: 317 EFEARAKRLADQAHRDALTGVLNRRQLEAVLEQEFLRAGRQGWPLSVAFIDLDDFKKIND 376

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILANDL 199
             GH  GD+V+   + +L         V R GGEEF A    +SE  A      +LAN  
Sbjct: 377 AHGHLTGDEVLRAFAGKLQGQLRNSDTVARFGGEEFVALLPNTSETVALDVIRRVLAN-- 434

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVV 256
             I+      +  GP + +T SAG+A +   E    +  ++  AD  LY +K  GRNRV+
Sbjct: 435 --IVATPMAELEGGP-LFVTFSAGVATQGGYERFADVQDLLRAADDVLYRSKNLGRNRVI 491

Query: 257 CFS 259
             S
Sbjct: 492 ARS 494


>gi|119897735|ref|YP_932948.1| response regulator [Azoarcus sp. BH72]
 gi|119670148|emb|CAL94061.1| probable response regulator [Azoarcus sp. BH72]
          Length = 656

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 12/183 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL I+  R+ + +  D L+G  N    I  +             LS +  D+D FKQIND
Sbjct: 474 ELAITNRRLQEAALTDALTGFPNRRYAIDRMQQEWTAAKRNGRPLSCMIIDLDGFKQIND 533

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGD V+   +D L +       + R GG+EF      +   +    A  LR  ++
Sbjct: 534 TYGHDVGDMVLRQSADALRLALRGQDVICRTGGDEFLVICPDTDLAQGLSCAERLRAAVD 593

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
              I ++   ++ +TIS G+A R      +  ++ RADQ  Y+AK+ GRN   C + ++ 
Sbjct: 594 ALAI-VTGADTLGLTISIGVAVRDDSMADLDALMKRADQGAYLAKQRGRN---CVASVQG 649

Query: 264 NTC 266
              
Sbjct: 650 GAA 652


>gi|225571389|ref|ZP_03780385.1| hypothetical protein CLOHYLEM_07487 [Clostridium hylemonae DSM
           15053]
 gi|225159865|gb|EEG72484.1| hypothetical protein CLOHYLEM_07487 [Clostridium hylemonae DSM
           15053]
          Length = 330

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 84/174 (48%), Gaps = 11/174 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNF 146
           ++E F       + S +D ++G+ NH +F            +L     D+D FK +ND +
Sbjct: 154 VREAFELVELFRKRSEMDLMTGIYNHDSFQRKTEERLMKGNQLCFYIIDLDDFKSVNDTY 213

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD ++  L+  +   F     VGRLGG+EFA   +    QE       LR++    
Sbjct: 214 GHSAGDAILKCLAKLIRKYFPEDAVVGRLGGDEFAVCEVCPGTQEER--KERLRQMRAEY 271

Query: 207 QINISSG--PSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
           Q  +S G       + S GIAE+  KE ++   I  RAD+ALY AK+ G++R  
Sbjct: 272 Q-QLSGGLLKENPCSYSVGIAEK-GKESMTYRQIFERADEALYAAKQRGKDRTA 323


>gi|163800819|ref|ZP_02194719.1| putative GGDEF family protein [Vibrio sp. AND4]
 gi|159175168|gb|EDP59965.1| putative GGDEF family protein [Vibrio sp. AND4]
          Length = 655

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 80/162 (49%), Gaps = 11/162 (6%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           SR+D L+G LN SA I  + S       N +  +V  D+D FK IND +GHP GD V+  
Sbjct: 477 SRLDRLTGSLNRSAIIDKISSQTISAPENMRYVLVLIDMDRFKSINDKYGHPTGDLVLKH 536

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +   +        ++GRLGGEEF        E +       L+K I   Q       S++
Sbjct: 537 VCQAVQAKLNKGEYIGRLGGEEFILLLKNVDEIDVPFRIQSLQKSILEKQFVSKQNESLY 596

Query: 218 ITISAGIAERCHKEPISTI--IYR-ADQALYVAKKSGRNRVV 256
           +T  A +A     +P+S+   +Y   DQAL  +KK+G N +V
Sbjct: 597 VT--ASLAYLSTSKPLSSFDRLYSILDQALSQSKKNGHNALV 636


>gi|66046557|ref|YP_236398.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63257264|gb|AAY38360.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 548

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 90/181 (49%), Gaps = 23/181 (12%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQIND 144
           EL I+ N +  ++  D L+ L N   F ++L       S N+  ++I+  DID+FKQ ND
Sbjct: 352 ELNIARNDLEIIAHTDSLTHLANRRCFDTALQQEWGRASRNDATIAIILLDIDWFKQYND 411

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDL 199
            +GH  GD  +     Q+  + G  +        R GGEEF      +    A  LA  +
Sbjct: 412 TYGHLQGDDCLR----QVAGLIGNSLDRSGDMAARYGGEEFVILLPETDLAGALKLAEKI 467

Query: 200 RKIIENSQINISSGPSIHITISAGI-----AERCHKEPISTIIYRADQALYVAKKSGRNR 254
           R  IE S I  SS P   ++IS+G+     AE+  K+  +  +  AD+ LY+AK  GRNR
Sbjct: 468 RSSIEASCIEHSSSPLGRLSISSGVVAINAAEK--KDAHTAALKEADRLLYLAKTKGRNR 525

Query: 255 V 255
           V
Sbjct: 526 V 526


>gi|51246567|ref|YP_066451.1| hypothetical protein DP2715 [Desulfotalea psychrophila LSv54]
 gi|50877604|emb|CAG37444.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 382

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 10/163 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GLLN    +  L +  ++       L++   DID+FK++ND  GH  GD V
Sbjct: 198 ELASRDELTGLLNRRKIMEILDTEIKRAADNKTALTLCLVDIDHFKKVNDVHGHSAGDTV 257

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           + +++D +         VGR GGEEF      +S  EA+++   +R+ I      + S  
Sbjct: 258 LRYVADTIRRGIRKADRVGRYGGEEFCILLPHTSISEASLVLERIRQDIAAMTFPLDSSD 317

Query: 215 SIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255
            + ++IS G  +     + P   +I  AD ALY AK+SGRNR+
Sbjct: 318 ELSLSISLGQVQYAPAIRSP-RQLIDLADTALYRAKRSGRNRL 359


>gi|330822768|ref|YP_004386071.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Alicycliphilus denitrificans K601]
 gi|329308140|gb|AEB82555.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alicycliphilus denitrificans K601]
          Length = 1100

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 89/169 (52%), Gaps = 10/169 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI  LS  D L+GLLN  +F       I   G+ + +LS+++FD+D FK IN++ GH  G
Sbjct: 666 RIQALSNFDTLTGLLNKKSFDERLALAIERAGASHGRLSMLWFDLDNFKLINESLGHTAG 725

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++   +++L    GT   + R  G+ F A    + +   A++A +  ++++ +     
Sbjct: 726 DELLVEAANRLRSCLGTQNALARYSGDAFVAIVPQADQASVALMAQEALRLLQTA--TSV 783

Query: 212 SGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFS 259
            G  + ++ SAG+A        + T+   A+ A+Y  K+ GRN +  F+
Sbjct: 784 QGHPVSVSASAGVAVYPDDARTAGTLASAAELAMYRVKEDGRNGLRFFA 832


>gi|325528192|gb|EGD05373.1| putative diguanylate cyclase [Burkholderia sp. TJI49]
          Length = 341

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 9/167 (5%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS--------IVFFDIDYFKQINDNF 146
           ++   I  L+R D L+GL N     + LG    + S        +++ D+D FK IND F
Sbjct: 162 LTERHIRHLARHDALTGLPNRHELHAELGRMLAQRSPLPDVAAAVMYLDLDGFKAINDRF 221

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+V+  ++++L           R+GG+EF  A  G++    + LA ++ + I ++
Sbjct: 222 GHQAGDEVLMQVAERLGRTLLNGELAARIGGDEFVVAIDGTTTHACSTLAAEIIRQI-SA 280

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
              +S G ++   IS GIA    +     +I +AD ALY AK +G+ 
Sbjct: 281 PYTLSIGETVSFGISIGIALDDGRRSPDELIRQADSALYDAKSAGKG 327


>gi|323973267|gb|EGB68457.1| GGDEF domain-containing protein [Escherichia coli TA007]
          Length = 301

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 134 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 193

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +         + R+GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 194 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 253

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 254 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 290


>gi|304407948|ref|ZP_07389598.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9]
 gi|304342967|gb|EFM08811.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9]
          Length = 590

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 80/156 (51%), Gaps = 6/156 (3%)

Query: 105 RIDCLSGLLNHSAFISSLGSY-NEKL--SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           R D L+GL N   F + +  + +++L  +++  D+D FK IND FGH  GD+V+  L++ 
Sbjct: 435 RHDSLTGLFNRRMFDNVIQDWVDQRLPFALLLLDVDNFKTINDTFGHLTGDEVLKKLAET 494

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           ++          R GGEEF       +  E   LA  LR+ +   +      P   IT+S
Sbjct: 495 MLAASREEDVCFRYGGEEFGILLQRDTADELYALAEQLRQNVHGLRGKDLDLPP--ITVS 552

Query: 222 AGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            GIA      E  S++I RAD ALY +K  G++RV 
Sbjct: 553 IGIASLHVMDESPSSVIERADAALYESKARGKDRVT 588


>gi|319760863|ref|YP_004124800.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|317115424|gb|ADU97912.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
          Length = 1100

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 89/169 (52%), Gaps = 10/169 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI  LS  D L+GLLN  +F       I   G+ + +LS+++FD+D FK IN++ GH  G
Sbjct: 666 RIQALSNFDTLTGLLNKKSFDERLALAIERAGASHGRLSMLWFDLDNFKLINESLGHTAG 725

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++   +++L    GT   + R  G+ F A    + +   A++A +  ++++ +     
Sbjct: 726 DELLVEAANRLRSCLGTQNALARYSGDAFVAIVPQADQASVALMAQEALRLLQTA--TSV 783

Query: 212 SGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFS 259
            G  + ++ SAG+A        + T+   A+ A+Y  K+ GRN +  F+
Sbjct: 784 QGHPVSVSASAGVAVYPDDARTAGTLASAAELAMYRVKEDGRNGLRFFA 832


>gi|227081547|ref|YP_002810098.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|298498540|ref|ZP_07008347.1| GGDEF family protein [Vibrio cholerae MAK 757]
 gi|227009435|gb|ACP05647.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|297542873|gb|EFH78923.1| GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 537

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%)

Query: 76  ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127
           + ISLLL YI    L+E      +   R ++L  +   D L+ + N   F   L    +E
Sbjct: 325 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 384

Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           K S  ++ FDID FKQIND++GH  GD  +  + D +           R GG+EFA  + 
Sbjct: 385 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 444

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
            + E         +RK++E   + +++   + +TIS G +  C + EP   I+   D  L
Sbjct: 445 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 502

Query: 245 YVAKKSGRNRV 255
           Y++K  GRNRV
Sbjct: 503 YLSKSKGRNRV 513


>gi|226943291|ref|YP_002798364.1| intracellular signalling protein [Azotobacter vinelandii DJ]
 gi|226718218|gb|ACO77389.1| intracellular signalling protein with diguanylate cyclase and
           phosphodiesterase activities [Azotobacter vinelandii DJ]
          Length = 586

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 32/216 (14%)

Query: 72  VIISITISLLLGYISGSILKELFI----SYNRISQLSRIDCLSGLLNHSAF-------IS 120
           + I +++      ++    ++L +    S++RI QL+  D L+ L N           I+
Sbjct: 122 IAIDVSVQTEREEVARQRCRQLMLEREESHDRIRQLAFYDPLTDLPNRGLLLIQADQAIA 181

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   L+++FFD+D FK IND  GHP GD ++  ++ +L     T   VGRL G+EF
Sbjct: 182 RARRERTALNVLFFDLDRFKLINDTLGHPAGDLMLRTIAQRLRSELRTTDIVGRLAGDEF 241

Query: 181 AAAALGSSEQEAAILAN-DLRKIIE-----NSQINIS---SGPSIHITISAGIAE-RCHK 230
                        +LA+ DLR+  E       Q++ S   +G ++  + S GI+      
Sbjct: 242 -----------VVVLADCDLRQTTETIRRIQKQLSASCQIAGATLAPSASIGISRFPDDG 290

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           E + T++Y AD A+Y AK  GR +   FS+  N   
Sbjct: 291 EDMETLLYYADLAMYQAKSKGRGQFSFFSEEMNRQA 326


>gi|218509758|ref|ZP_03507636.1| putative sensory box/GGDEF family protein [Rhizobium etli Brasil 5]
          Length = 195

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 67/125 (53%), Gaps = 1/125 (0%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +  FDID FKQIND FGH  GD V+   + ++          GR+GGEEF      +S +
Sbjct: 69  LAVFDIDKFKQINDRFGHHAGDLVLRDFAHRIHQNVRRNDCFGRVGGEEFLLVMPSTSPE 128

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +A  +   +  +I  S+  ++  P    T SAGIA     +  S +  RADQALY AK S
Sbjct: 129 DALDMVERMLTVIRFSR-PLADSPDFSYTCSAGIAASLPSDSASELYRRADQALYDAKMS 187

Query: 251 GRNRV 255
           GR+RV
Sbjct: 188 GRDRV 192


>gi|254456786|ref|ZP_05070214.1| sensory box/ggdef family protein [Campylobacterales bacterium GD 1]
 gi|207085578|gb|EDZ62862.1| sensory box/ggdef family protein [Campylobacterales bacterium GD 1]
          Length = 335

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 85/170 (50%), Gaps = 14/170 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           SI  +L  +YNR+     ++ +     H A       Y +  SI+  DID+FK INDN+G
Sbjct: 176 SITDKLTQTYNRL----HLENIFAQETHKA-----KRYGDTYSIIIMDIDFFKPINDNYG 226

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD+V+  +   L         +GR GGEEF      ++  +A  +A  LR  IE  +
Sbjct: 227 HDVGDQVLIDIVQVLKSHIRDIDVLGRWGGEEFLIICTKTNIDQAYTVAEKLRVAIERYE 286

Query: 208 INISSGPSIHITISAGIAERCHKEPISTI-IYRADQALYVAKKSGRNRVV 256
            ++       IT S G++E    +  S + + RAD ALY +K +GRN V 
Sbjct: 287 FDVIG----KITGSFGVSEYKQSDSNSDVAVKRADDALYTSKDAGRNLVT 332


>gi|170740237|ref|YP_001768892.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium sp. 4-46]
 gi|168194511|gb|ACA16458.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium sp. 4-46]
          Length = 1034

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 82/167 (49%), Gaps = 9/167 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +RI  L++ D L+ L N   F   L +       +  ++++ D+D FK +ND  GHPVGD
Sbjct: 599 DRIRFLAQHDPLTRLPNRVLFRERLDAMMRADAPDATALLYLDLDAFKNVNDTLGHPVGD 658

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++A +  +L    G    V RLGG+EFA A    +E EAA  A   R I + S     +
Sbjct: 659 ALLAAVGARLGACVGEGGVVARLGGDEFAVAC---AEGEAAAQALATRIIAQLSAPYALA 715

Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           G ++ +  S GIA          T++  AD ALY AK  GR     F
Sbjct: 716 GRTVQVGASVGIAVSGPEARDADTLLRHADMALYEAKGRGRGLACVF 762


>gi|66045521|ref|YP_235362.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63256228|gb|AAY37324.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 555

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 86/172 (50%), Gaps = 15/172 (8%)

Query: 107 DCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L      +  E+  LS++  D D+FK+ ND++GH  GD+ +  L+
Sbjct: 361 DKLTGLANRRRFDQFLEVEFKRARRERSPLSLILIDADHFKRYNDHYGHLAGDECLIALA 420

Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +      P  V  R GGEE A    G+ E  A  +A  + + I + QI   + P   +
Sbjct: 421 RVVEQFIRRPSDVAARYGGEEIAVVLPGTDESNARQVAEKILRAIRDEQIEHPASPFGIV 480

Query: 219 TISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           TIS G+A     +R   +    +I  AD+ALY AK  GRNRV   S+I  +T
Sbjct: 481 TISLGVATFVGTDRQLDQ--RGLIELADRALYAAKSQGRNRVNVASEIATST 530


>gi|319650990|ref|ZP_08005125.1| hypothetical protein HMPREF1013_01734 [Bacillus sp. 2_A_57_CT2]
 gi|317397346|gb|EFV78049.1| hypothetical protein HMPREF1013_01734 [Bacillus sp. 2_A_57_CT2]
          Length = 422

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 95/195 (48%), Gaps = 10/195 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-- 126
           +SL I++  +S    ++S S + +  I  ++  Q++  D L+G+ N +     +   N  
Sbjct: 210 ISLFILNYLVSR--SFLSKSQMLQNKIERDKFEQMAYTDFLTGVFNRAYMDKKMTELNQS 267

Query: 127 -EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            E ++IV  DID FK+IND++ H VGD+ I   +D L        ++ R GGEEF     
Sbjct: 268 AEHIAIVVADIDKFKRINDSYNHAVGDQAIRHFADSLKSYLSKDDYLFRSGGEEFTIIMR 327

Query: 186 GSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKE----PISTIIYRA 240
             S +E   LA  +RK IENS  +      SI ++ +A      +K      I      A
Sbjct: 328 FRSYEECLNLAQKIRKGIENSTFHADFKDQSISLSYTASFGLFYYKVNKLLSIEKAYVYA 387

Query: 241 DQALYVAKKSGRNRV 255
           DQ L  +K  G+NR+
Sbjct: 388 DQLLLQSKDMGKNRL 402


>gi|307552849|gb|ADN45624.1| inner membrane protein YcdT [Escherichia coli ABU 83972]
          Length = 479

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 21/164 (12%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI      
Sbjct: 309 DSLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIK----T 364

Query: 162 LVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISS 212
           +V + G  +       R+GGEEF         + A  LA  +R+ +E     N +  I  
Sbjct: 365 VVSIIGKSIRPDDLFARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQ 424

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              + I+I A + ++    P   I   AD ALY AK++GRN+VV
Sbjct: 425 --KVTISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 465


>gi|302036588|ref|YP_003796910.1| response regulator [Candidatus Nitrospira defluvii]
 gi|300604652|emb|CBK40984.1| Response regulator, contains GGDEF domain [Candidatus Nitrospira
           defluvii]
          Length = 334

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 8/175 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
            ++++L  +   + +LS +D L+G+ N   F   L     +       LS++  DIDYFK
Sbjct: 144 EVMRQLQEANQMLLRLSCLDGLTGITNRRQFDDFLDQEWRRAARESTPLSLIMLDIDYFK 203

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND+ GH  GD+ +  ++  +      P   V R GG+EF     G++   AA +A+ L
Sbjct: 204 TYNDSHGHQAGDECLRQVAQLISSHVNRPGDLVARYGGDEFVIVLPGTTVDGAAQVADTL 263

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           R+ +  +++   +G  + I++             + +I  ADQALY AK+ GRNR
Sbjct: 264 RRKVCEAEMKHPNGDPVTISLGFACTVPSRVAAPTDLIRAADQALYQAKQEGRNR 318


>gi|292490564|ref|YP_003526003.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291579159|gb|ADE13616.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 304

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 11/197 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------- 124
           V+++ T++L   +++ S       S   +  L+  D L+G+ N    I+  GS       
Sbjct: 99  VMVNCTLTLFAVWLTASFCYLHLHSVLTLQHLAHRDQLTGVYNRHYLIAK-GSEQIKMWQ 157

Query: 125 -YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            Y    S++  DIDYFK+IND +GH  GD+V+  ++  L         + R GGEEF   
Sbjct: 158 RYQMPFSLIILDIDYFKKINDQYGHGAGDQVLKHIAKLLQSQTRNVDTICRYGGEEFVIL 217

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQ 242
                   A  +A+ +++ +  S +   +  +   T+S G+AE   K   +  +I  AD 
Sbjct: 218 LPMVDLDGALAMAHRIQRALSKSSLPWETM-TFRPTVSMGVAELVDKRWDLDKLIAEADM 276

Query: 243 ALYVAKKSGRNRVVCFS 259
           ALY AK  GRN+++  S
Sbjct: 277 ALYQAKSLGRNQIIPMS 293


>gi|269962166|ref|ZP_06176519.1| GGDEF family protein [Vibrio harveyi 1DA3]
 gi|269832997|gb|EEZ87103.1| GGDEF family protein [Vibrio harveyi 1DA3]
          Length = 374

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 94/188 (50%), Gaps = 9/188 (4%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEK 128
           + ++L+L        K+L  +  ++  LS  D L+ L N  + I +L        + +  
Sbjct: 178 LKLNLVLEEKVDERTKQLSNANKQLEALSLTDSLTQLPNRRSAIKTLKKLWKDEDARDLP 237

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L  +  D DYFKQ+ND  GH  GD V+  L+  L   F +   V RLGG+EF      + 
Sbjct: 238 LVCIMIDADYFKQVNDTCGHEAGDLVLTELAQALKHYFRSDDIVCRLGGDEFFVICPDTG 297

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247
            +    +A  +RK + +  +  S  P    +IS G+AER    E  + +I  AD+ +Y+A
Sbjct: 298 LEGGLHVAEAVRKQVSHMLVPTSVEP-WRGSISVGVAERRDNMETYTDLIRVADEGVYLA 356

Query: 248 KKSGRNRV 255
           K++G+NRV
Sbjct: 357 KQNGKNRV 364


>gi|220933899|ref|YP_002512798.1| diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995209|gb|ACL71811.1| diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 370

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 90/179 (50%), Gaps = 20/179 (11%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFG 147
           ++  R+ +L   D L+GL N   F   L    ++       L+ +F DID FK IND  G
Sbjct: 181 LNLRRLRELGLTDPLTGLRNRRYFDEQLPMECQRARREQGPLACLFVDIDRFKSINDVHG 240

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LANDLRKIIEN 205
           HP GD+ I  ++ ++         + R GGEEF    L S    AA   +A  +R+ +  
Sbjct: 241 HPAGDQAIREVAQRISAHVRPFDLLARYGGEEF--VILLSRLDAAATREVAERVRQAVAQ 298

Query: 206 SQINISSGPSIHITISAGIAERCHK-----EPIST---IIYRADQALYVAKKSGRNRVV 256
             ++++ GP + +++S G A  C +     EP  T   ++  AD AL  AK+SGRNRVV
Sbjct: 299 RPVSLADGPELELSVSLGGAV-CARWDSRDEPEQTGRRLMEAADLALLEAKQSGRNRVV 356


>gi|121593122|ref|YP_985018.1| diguanylate cyclase [Acidovorax sp. JS42]
 gi|120605202|gb|ABM40942.1| diguanylate cyclase [Acidovorax sp. JS42]
          Length = 388

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 79/164 (48%), Gaps = 10/164 (6%)

Query: 107 DCLSGLLNHSAFIS--SLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N  A +    L     +     L     D+D+FK++ND+ GH +GD V+   +
Sbjct: 211 DELTGLYNRRAMVELIQLECRRRRRGQGTLLFAMIDVDHFKRVNDHHGHAMGDHVLRVFA 270

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           D L         + R GG+EF         + A  L    R+ I    +  ++ P + ++
Sbjct: 271 DALRANVRETDVLARWGGDEFLLLLSDIEPRSAQTLLERTREAIAALPVP-NAPPDLRLS 329

Query: 220 ISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +SAG+A    H  P  T+  RADQALY AK  GRNRV    +++
Sbjct: 330 MSAGLALHMPHSSPQETL-ERADQALYAAKDQGRNRVALAPELQ 372


>gi|117927375|ref|YP_871926.1| diguanylate cyclase with GAF sensor [Acidothermus cellulolyticus
           11B]
 gi|117647838|gb|ABK51940.1| diguanylate cyclase with GAF sensor [Acidothermus cellulolyticus
           11B]
          Length = 710

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 88/183 (48%), Gaps = 13/183 (7%)

Query: 82  LGYISG--SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132
           LG  +G  S+  E  + +    +LS  D L+GL N+     +LG        +   L+++
Sbjct: 485 LGTFAGQASVAIENVLLHQEAERLSLTDALTGLWNYRYLTMTLGHEIERATRFRRPLALL 544

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D FK IND  GH  GD V+  L+ +L         V R GGEEF      +    A
Sbjct: 545 MIDLDRFKDINDRHGHQAGDAVLVELARRLHTTVREVDTVARYGGEEFVVILPETDADGA 604

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKS 250
           A  A  LR+ +  +  ++     I +T S GIA   R H    + ++  AD+ALYVAK S
Sbjct: 605 AHTAERLRQAVRGTPFHVEQM-DIPVTASIGIAVFPR-HGSSAAILLRAADEALYVAKHS 662

Query: 251 GRN 253
           GR+
Sbjct: 663 GRD 665


>gi|153825282|ref|ZP_01977949.1| ggdef family protein [Vibrio cholerae MZO-2]
 gi|183179374|ref|ZP_02957585.1| ggdef family protein [Vibrio cholerae MZO-3]
 gi|229515748|ref|ZP_04405207.1| GGDEF family protein [Vibrio cholerae TMA 21]
 gi|262192376|ref|ZP_06050529.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
 gi|149741110|gb|EDM55169.1| ggdef family protein [Vibrio cholerae MZO-2]
 gi|183012785|gb|EDT88085.1| ggdef family protein [Vibrio cholerae MZO-3]
 gi|229347517|gb|EEO12477.1| GGDEF family protein [Vibrio cholerae TMA 21]
 gi|262031729|gb|EEY50314.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
          Length = 527

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%)

Query: 76  ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127
           + ISLLL YI    L+E      +   R ++L  +   D L+ + N   F   L    +E
Sbjct: 315 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 374

Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           K S  ++ FDID FKQIND++GH  GD  +  + D +           R GG+EFA  + 
Sbjct: 375 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 434

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
            + E         +RK++E   + +++   + +TIS G +  C + EP   I+   D  L
Sbjct: 435 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 492

Query: 245 YVAKKSGRNRV 255
           Y++K  GRNRV
Sbjct: 493 YLSKSKGRNRV 503


>gi|323958044|gb|EGB53754.1| GGDEF domain-containing protein [Escherichia coli H263]
          Length = 479

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 21/164 (12%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI      
Sbjct: 309 DSLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIK----T 364

Query: 162 LVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISS 212
           +V + G  +       R+GGEEF         + A  LA  +R+ +E     N +  I  
Sbjct: 365 VVSIIGKSIRPDDLFARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQ 424

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              + I+I A + ++    P   I   AD ALY AK++GRN+VV
Sbjct: 425 --KVTISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 465


>gi|312881571|ref|ZP_07741352.1| hypothetical protein VIBC2010_03170 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370774|gb|EFP98245.1| hypothetical protein VIBC2010_03170 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 417

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 78/164 (47%), Gaps = 17/164 (10%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           Q++  D L+GL NH    +      E   I   D+D+FK+IND FGH  GD  +  L+  
Sbjct: 255 QMANQDSLTGLWNHRFLHNHACKTCEHYCIALIDVDHFKKINDTFGHDAGDAALVKLAQI 314

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH---- 217
           L   F     V R GGEEF   +    +   A L        EN + ++S  P +H    
Sbjct: 315 LKASFPDDTVV-RFGGEEFCIQSYSPFDHFIAKL--------ENMREDVSKTPIVHFEKT 365

Query: 218 --ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +TIS G+     +  +   I +AD  LY AK+SGRN++V + 
Sbjct: 366 IIMTISIGVT--GIQGSLDEKIKKADDRLYTAKRSGRNQLVAYD 407


>gi|223984933|ref|ZP_03635036.1| hypothetical protein HOLDEFILI_02338 [Holdemania filiformis DSM
           12042]
 gi|223963102|gb|EEF67511.1| hypothetical protein HOLDEFILI_02338 [Holdemania filiformis DSM
           12042]
          Length = 838

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 5/127 (3%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID+FK++ND +GH  GD+V+  ++  L  VF   + VGR GG+EF      S  
Sbjct: 701 ALILLDIDHFKEVNDTYGHWAGDQVLGQVAQLLQEVFSGEI-VGRPGGDEFLVYIRQSEP 759

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           +       DLR+ I+  +++ +      ++ISAG A         T+  +AD+ALY AK+
Sbjct: 760 ENVRQRCEDLRRRIQEIRLSATE----RLSISAGCAGASADSTFETLYQQADKALYQAKE 815

Query: 250 SGRNRVV 256
            GRN++V
Sbjct: 816 KGRNQIV 822


>gi|222640395|gb|EEE68527.1| hypothetical protein OsJ_26969 [Oryza sativa Japonica Group]
          Length = 1502

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 79/135 (58%), Gaps = 8/135 (5%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           ++ + ++D+FK +ND+FGH  GD+++   ++ LV       +VGRLG +EFA     + +
Sbjct: 372 ALCYINLDHFKLVNDSFGHAAGDQMLRSFAEYLVAAVRDGDWVGRLGADEFAVFLAHAGQ 431

Query: 190 QEAAILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALY 245
            EA  +   L+++I N   +   +S G S  ++ S G+ E     P ++ ++  AD A Y
Sbjct: 432 DEAKRV---LQRVIRNLGQATFLVSEG-SPQLSCSIGVVEVSADAPDVNWLMSAADSACY 487

Query: 246 VAKKSGRNRVVCFSD 260
            AK++GRNRV CF++
Sbjct: 488 AAKQAGRNRVHCFNE 502



 Score = 49.3 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 10/100 (10%)

Query: 61   LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
            LEY  VE L L +  +   ++  Y     L  L    + + QL+  D L+GL N  A + 
Sbjct: 1122 LEY-RVEALQLAVTWLL--MMAAYALNQRLGRLRQQRDELRQLAETDGLTGLPNRRAGLQ 1178

Query: 121  SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDK 153
             L  + E+       L I F DID FK IND  GH VGD+
Sbjct: 1179 QLARHLERVDRERGPLVIGFLDIDLFKDINDRHGHAVGDQ 1218


>gi|109898977|ref|YP_662232.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
 gi|109701258|gb|ABG41178.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
          Length = 681

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 92/176 (52%), Gaps = 16/176 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           N + ++S  D L+GLLN    IS +         +  +S+ +FD+D FK+IND +GHP+G
Sbjct: 244 NNLKKISSTDPLTGLLNRRGMISKVRKEFKHIVEHHTISLFYFDVDDFKKINDTYGHPIG 303

Query: 152 DKVIAFLSDQLVVVFGTPMFVG-----RLGGEEFAAAALGSSEQEAAILANDL-RKIIEN 205
           D+++  +  ++ ++     F G     RL G+EF        +++A  ++  + +++I+ 
Sbjct: 304 DELLVAICQKVKLIISEMNFEGRYSFARLAGDEFVLTITDCDKEKAIQVSRRIGQQLIDP 363

Query: 206 SQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +   SG  + + IS G+A    K+     ++ +AD A+  AK+ G+ R   F D
Sbjct: 364 IPV---SGCEVKVGISLGLAYSSDKKASFKALLSQADSAMRCAKEQGKGRFKVFDD 416


>gi|238761891|ref|ZP_04622865.1| Predicted diguanylate cyclase [Yersinia kristensenii ATCC 33638]
 gi|238700005|gb|EEP92748.1| Predicted diguanylate cyclase [Yersinia kristensenii ATCC 33638]
          Length = 366

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 89/181 (49%), Gaps = 7/181 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQ 141
           +  ++  L+    + S LS ID L+ L N     + L +   +      ++  DID+FK 
Sbjct: 178 TRKLVAHLYNEREKFSDLSMIDPLTSLYNRRGLENKLETLLAQSPGNHYVLLLDIDHFKA 237

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            NDN+GH +GD+ +  ++  +     +   V R GGEEF       SE+ A  LA  +R+
Sbjct: 238 YNDNYGHTMGDQALVRVAAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYATQLAERVRQ 297

Query: 202 IIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +    I    +   S  +T+SAGI+       +++ +  AD+ALY AKK GRN+V    
Sbjct: 298 RVLGLDIPHVFNHKVSTTVTLSAGISP-LQSYDLASSLKAADEALYRAKKDGRNKVAFAK 356

Query: 260 D 260
           D
Sbjct: 357 D 357


>gi|256830904|ref|YP_003159632.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
 gi|256580080|gb|ACU91216.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
          Length = 542

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 94/184 (51%), Gaps = 14/184 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L  +  +++ LS  D L+G+ N   F  SL     +       +SI+  D+D+FK  N
Sbjct: 351 EDLKRANEQLTLLSMRDGLTGIPNRRMFDDSLKQEWRRAMRDKTPVSIILGDVDFFKDYN 410

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D  GH  GD+ +  ++  L      P   V R GGEEFA     +    A  +A  LR+ 
Sbjct: 411 DAHGHLQGDQCLIAVAAVLQQQMNRPADLVARFGGEEFAIILADTGTDGAEHVAQSLRQA 470

Query: 203 IENSQINIS-SGPSIHITISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNRVV 256
           I +  +    S  +  +T+S G+A    +     E ++ +++RAD+A+Y +K+ GRNRV+
Sbjct: 471 ILDLHLEHGHSDAAPCLTMSFGVASMVPQPEDGDEGMAELLHRADRAMYQSKRLGRNRVI 530

Query: 257 CFSD 260
            +SD
Sbjct: 531 VWSD 534


>gi|226311854|ref|YP_002771748.1| signaling protein [Brevibacillus brevis NBRC 100599]
 gi|226094802|dbj|BAH43244.1| probable signaling protein [Brevibacillus brevis NBRC 100599]
          Length = 815

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 16/172 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  ++  D L+ L N + F   L          +EK+ ++F D+D FK IND  GH +GD
Sbjct: 381 IRYMAHYDSLTNLPNRTLFHEKLAEAMLKAKQKDEKIGVMFIDLDRFKNINDTLGHSIGD 440

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN----DLRKIIENSQI 208
            ++  ++++L+        V RLGG+EFA    G + +EA  +A      + + I    I
Sbjct: 441 VLLQAVANRLICCLRKEDSVSRLGGDEFAIFLTGVTHREAGEIAQRIITSMSESITLDHI 500

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            I   PSI I++          + I  ++  AD A+Y+AK+ G+N    FS+
Sbjct: 501 EIFITPSIGISMYPDDG-----DDIEALLKHADAAMYLAKEQGKNNYQFFSE 547


>gi|120556594|ref|YP_960945.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120326443|gb|ABM20758.1| periplasmic/7TM domain sensor diguanylate cyclase [Marinobacter
           aquaeolei VT8]
          Length = 935

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 64/201 (31%), Positives = 100/201 (49%), Gaps = 19/201 (9%)

Query: 71  LVIISITISLLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           ++I  + I+ LL Y +   G + +EL  +   +S+LS  D L+ L N S F         
Sbjct: 729 ILIAGLVITALLVYWNRKLGRLNRELADANEALSRLSVTDNLTQLGNRSYFDREFPHSFQ 788

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEE 179
               +    ++   D D+FK+IND +GH  GD+ +  L+D +   F      + R GGEE
Sbjct: 789 WCQRHKTGFAVAMVDADHFKKINDTWGHEAGDQCLQALADVMREHFRRETDRLSRFGGEE 848

Query: 180 FAAAALGSSEQEAAILANDL---RKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236
           F    + +S ++A+ +   L   R  + N Q +   G +I +T+S G+A    K   S  
Sbjct: 849 F---IIFTSYEDASDIMERLERFRAAVANRQCDTCQGSAIELTVSIGLAYGVPKPTGSPA 905

Query: 237 IY--RADQALYVAKKSGRNRV 255
            Y   ADQALY AK +GRNR+
Sbjct: 906 EYLRLADQALYAAKGNGRNRL 926


>gi|124265854|ref|YP_001019858.1| signal transduction protein [Methylibium petroleiphilum PM1]
 gi|124258629|gb|ABM93623.1| signal transduction protein [Methylibium petroleiphilum PM1]
          Length = 1006

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 9/170 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++S L+  D L+GL N   F         S   +  + +++F D+D+FK +ND+ GH VG
Sbjct: 568 KMSYLAHHDGLTGLPNRVLFQDRVHQACQSGRRHGRRFAVIFMDLDHFKHVNDSLGHAVG 627

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINI 210
           D+++  ++ +L         + RLGG+EF        + E   +A   +KI+   +Q  +
Sbjct: 628 DELLKAVAQRLTGALRASDTICRLGGDEFVVLLSDLDDVEVDGVAEVAKKILRQVAQPCV 687

Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             G  +++  S GIA      E   T++ RAD A+Y +K+ GRNR   FS
Sbjct: 688 LGGTEVNVGASLGIALFPGDGEDPDTLMKRADAAMYRSKREGRNRYHFFS 737


>gi|310780255|ref|YP_003968587.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
 gi|309749578|gb|ADO84239.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
          Length = 313

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 84/173 (48%), Gaps = 11/173 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEK-----LSIVFFDIDYFKQIN 143
           +L ++  +I++L   D L+ L N   F   +  L S  ++     + I+F DID+FK IN
Sbjct: 141 QLKLANEKITKLLNTDFLTDLYNRKHFFERLEELVSLKKRKDCLNIGIIFADIDFFKTIN 200

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD V+   S  L         + R+GGEEF       ++     ++  LRK  
Sbjct: 201 DTYGHDTGDLVLIKFSQMLKESLRKEDIIARIGGEEFCIIVQCGTDNCLTNISEKLRK-- 258

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            N +  I     I +T S G       E I + I RAD+ +Y AK +GRN+V+
Sbjct: 259 -NCESMIFDNIDIKLTASFGATFYRVGEEIDSTIKRADENMYKAKDTGRNKVI 310


>gi|260770821|ref|ZP_05879750.1| sensory box/GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260614058|gb|EEX39248.1| sensory box/GGDEF family protein [Vibrio furnissii CIP 102972]
          Length = 636

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 21/169 (12%)

Query: 97  YNRISQL---SRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQIND 144
           YN I +L   S  D  + L N   F  +L  Y              +   DID FK IND
Sbjct: 459 YNAIVELKERSERDPATSLWNKKKFEHTLQYYARLKQRYPNQPPTCLAIIDIDSFKAIND 518

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH VGD+VI +++ QL  +     F+ R+GG+EFA     +   +A        K+++
Sbjct: 519 SLGHTVGDEVILYVAIQLQSLLRDTDFIARIGGDEFAVIIQHTDIHQAV-------KLMQ 571

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
                ISS P   +T+S G+AE   + P +     AD+A+Y +K+ G+N
Sbjct: 572 RVCTAISSWPQHKVTVSVGVAEVTAEAPQTCT--NADKAMYRSKRKGKN 618


>gi|107026294|ref|YP_623805.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
 gi|105895668|gb|ABF78832.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
          Length = 495

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 12/168 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           I  L+R D L+GL N     + L           +   ++++ D+D FK IND FGH  G
Sbjct: 317 IRHLARHDALTGLPNRHELHAELKRMLARRPRLPSPAFAVMYLDLDGFKSINDRFGHQAG 376

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++++L           R+GG+EF  A   ++ Q  +ILA  + + I ++   +S
Sbjct: 377 DEVLTQVAERLGKTLPPGELAARIGGDEFIVAIDDTTMQACSILAARIIRQI-SAPYALS 435

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            G ++ I IS GIA +  H  P   +I +AD ALY AK +G+  + CF
Sbjct: 436 IGETVCIGISIGIALDDGHGSP-DELIRQADSALYDAKSAGKG-IYCF 481


>gi|94970869|ref|YP_592917.1| diguanylate cyclase [Candidatus Koribacter versatilis Ellin345]
 gi|94552919|gb|ABF42843.1| diguanylate cyclase [Candidatus Koribacter versatilis Ellin345]
          Length = 472

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 12/177 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           ++L E    + R++ L  +D L+ L N   F     S   +       +S++  D+D FK
Sbjct: 285 AVLGERDRLHERLTGLVYVDWLTDLPNRRHFDMRFNSEWRRAMRSRMPISLMMIDVDQFK 344

Query: 141 QINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           + ND +GH  GD+ +A L   +   V  +  FV R GGEEF      ++   A I+A ++
Sbjct: 345 EYNDAYGHMAGDRCLAKLGSVMAASVKRSADFVARYGGEEFVVILPETTATGAGIVAANV 404

Query: 200 RKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRN 253
            + +   ++  +  P   +++S GIA        EP S ++  AD+ALY AK+ GRN
Sbjct: 405 MEAVAALELPHAGSPHKQVSVSVGIAYAHPDIGAEP-SELVRSADRALYTAKRDGRN 460


>gi|46908145|ref|YP_014534.1| GGDEF domain-containing protein [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|46881415|gb|AAT04711.1| GGDEF domain protein [Listeria monocytogenes serotype 4b str.
           F2365]
          Length = 375

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 85/169 (50%), Gaps = 14/169 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++ +  D L+ L N   F    G          + LS+   DID+FK+IND  GH  G+
Sbjct: 204 LTETAMTDSLTNLPNMRFFTQQFGWIFAKSQKRKKSLSLFIIDIDHFKEINDFHGHQAGN 263

Query: 153 KVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI--N 209
            V+A  S  L    F       R+GGEEFA        ++AA++A   R+ +E ++   N
Sbjct: 264 TVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTEQAALIAYFFREEVERAKFPYN 323

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVC 257
            +SG    +T+S G+A        +  ++  ADQALY AK++GRN++  
Sbjct: 324 PASG---KVTVSIGVASASSNFSTTESLFEAADQALYQAKQNGRNQIAV 369


>gi|147674636|ref|YP_001216937.1| GGDEF family protein [Vibrio cholerae O395]
 gi|262169320|ref|ZP_06037012.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|146316519|gb|ABQ21058.1| ggdef family protein [Vibrio cholerae O395]
 gi|262022133|gb|EEY40842.1| GGDEF family protein [Vibrio cholerae RC27]
          Length = 527

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%)

Query: 76  ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127
           + ISLLL YI    L+E      +   R ++L  +   D L+ + N   F   L    +E
Sbjct: 315 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 374

Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           K S  ++ FDID FKQIND++GH  GD  +  + D +           R GG+EFA  + 
Sbjct: 375 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 434

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
            + E         +RK++E   + +++   + +TIS G +  C + EP   I+   D  L
Sbjct: 435 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 492

Query: 245 YVAKKSGRNRV 255
           Y++K  GRNRV
Sbjct: 493 YLSKSKGRNRV 503


>gi|330974466|gb|EGH74532.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 530

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 86/172 (50%), Gaps = 15/172 (8%)

Query: 107 DCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L      +  E+  LS++  D D+FK+ ND++GH  GD+ +  L+
Sbjct: 336 DKLTGLANRRRFDQFLEVEFKRARRERSPLSLILIDADHFKRYNDHYGHLAGDECLIALA 395

Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +      P  V  R GGEE A    G+ E  A  +A  + + I + QI   + P   +
Sbjct: 396 RVVEQFIRRPSDVAARYGGEEIAVVLPGTDESNARQVAEKILRAIRDEQIEHPASPFGIV 455

Query: 219 TISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           TIS G+A     +R   +    +I  AD+ALY AK  GRNRV   S+I  +T
Sbjct: 456 TISLGVATFVGTDRQLDQ--RGLIELADRALYAAKSQGRNRVNVASEIATST 505


>gi|315126736|ref|YP_004068739.1| hypothetical protein PSM_A1661 [Pseudoalteromonas sp. SM9913]
 gi|315015250|gb|ADT68588.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 424

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 10/164 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S ++ +D L+ + N   F   L +        N +LS++  DID FK+ ND +GH  GD
Sbjct: 253 LSDMAFLDSLTKIANRRRFDEKLHAEFKKLIKVNTQLSMIIIDIDNFKKFNDRYGHIAGD 312

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           K +  ++ +L      P  FV R GGEEF      +  Q A  +A  ++K IE+  I   
Sbjct: 313 KCLHSVAQKLAETVSRPEDFVARYGGEEFVVLLPQTDNQGALFIAEQIQKSIEDLAIAHE 372

Query: 212 SGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRN 253
              +  +++S G+    H E  + + +    D ALY AK+ GRN
Sbjct: 373 DSFTGFLSVSMGVHTVKHGEKTNHVDFFKATDSALYYAKRQGRN 416


>gi|289207702|ref|YP_003459768.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
 gi|288943333|gb|ADC71032.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
          Length = 1072

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 10/171 (5%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N   F       I +       L++++FD+D FK IND FGH  GD V+
Sbjct: 649 LAEHDPLTGLYNRHRFQRQLEQAIHTARRRGTHLALIYFDLDEFKTINDTFGHRAGDTVL 708

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              + ++  +        RLGG+EFA     ++E+E   LA  + + I         G +
Sbjct: 709 VRAAGEIASLVREEEIFARLGGDEFAILVDHAAEREPEGLAERVARAISAIPFRF-RGQN 767

Query: 216 IHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             +T S GIA    H + +  ++  AD A+Y AK SG+N    F D   NT
Sbjct: 768 YRLTASIGIARYPEHGDNVEDLVAHADAAMYQAKDSGKNTWAVF-DASRNT 817


>gi|153212712|ref|ZP_01948369.1| ggdef family protein [Vibrio cholerae 1587]
 gi|124116362|gb|EAY35182.1| ggdef family protein [Vibrio cholerae 1587]
          Length = 527

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%)

Query: 76  ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127
           + ISLLL YI    L+E      +   R ++L  +   D L+ + N   F   L    +E
Sbjct: 315 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSEHLCKMLDE 374

Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           K S  ++ FDID FKQIND++GH  GD  +  + D +           R GG+EFA  + 
Sbjct: 375 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 434

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
            + E         +RK++E   + +++   + +TIS G +  C + EP   I+   D  L
Sbjct: 435 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 492

Query: 245 YVAKKSGRNRV 255
           Y++K  GRNRV
Sbjct: 493 YLSKSKGRNRV 503


>gi|332532219|ref|ZP_08408100.1| GGDEF domain protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038317|gb|EGI74762.1| GGDEF domain protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 298

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 11/164 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y+R+ +L+  D L+GL N S F       + +   Y    S++  D+D FKQ+NDNFGH 
Sbjct: 134 YSRVLKLATKDALTGLNNRSQFNDFLLQKLENCRRYQRPFSLMLLDLDNFKQVNDNFGHK 193

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD  +   S  L         V R GG+EFA            ++A  +  ++  S + 
Sbjct: 194 IGDDTLKEFSKVLCSSIRGTDSVFRFGGDEFALLIEDPEFTTNKVIAERIMCLVRKSPLM 253

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
                +  I  +   ++ C  E    I  RAD+ LY AK SGRN
Sbjct: 254 SKYKVTTSIGFTLANSQDCETE----IFARADKGLYKAKASGRN 293


>gi|209695294|ref|YP_002263223.1| membrane associated receptor [Aliivibrio salmonicida LFI1238]
 gi|208009246|emb|CAQ79509.1| membrane associated receptor [Aliivibrio salmonicida LFI1238]
          Length = 482

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 82/155 (52%), Gaps = 9/155 (5%)

Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GLLN  +    +  +   ++  +++ FDID FK IND +GHP GD+V+  ++  + 
Sbjct: 329 DDLTGLLNRRSMTKVVNRFIEEDKPFALICFDIDNFKDINDTYGHPEGDEVLLHITYLVS 388

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS--IHITIS 221
            + G    + RLGG+EFA        Q+ + +A  + ++IE S   I   P   I  TIS
Sbjct: 389 DLLGEATPIIRLGGDEFAVLLEIGDLQQLSHVAKKIHQVIEESPTII---PDLIIEQTIS 445

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G A     E    ++  ADQALY +K  GRN+V 
Sbjct: 446 LG-AVLWRGERKEVLLKLADQALYDSKDRGRNQVT 479


>gi|91792747|ref|YP_562398.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91714749|gb|ABE54675.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella denitrificans OS217]
          Length = 888

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 90/170 (52%), Gaps = 9/170 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ +LS  D L+ L N + F+S + +          +L++VF D+D+FK IND+ GH  G
Sbjct: 452 KLDKLSLHDPLTQLPNRAQFMSRIDNAIYYAKQEGTQLAVVFIDVDFFKHINDSLGHVAG 511

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++  L+++L  +      + RLGG+EF+     +S      + N +  + E +  + S
Sbjct: 512 DTILVELANRLSSILHPGAVLSRLGGDEFSLLTNMASTDNLIAIVNRIFSVFE-APFSCS 570

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +G SI +T S G+A      +    ++  AD A++ AK+ GRN    +++
Sbjct: 571 NGQSIRLTASMGLALYPSDGKDNDGLLRNADAAMHRAKQDGRNNYAFYTE 620


>gi|78044643|ref|YP_360678.1| GGDEF domain-containing protein [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996758|gb|ABB15657.1| GGDEF domain protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 217

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 7/167 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKV 154
           +  +S  +  D L+GL N + F   L +   K  +S++  D+D FK IND +GH  GD V
Sbjct: 53  FKEVSVQANTDALTGLFNRNYFNEKLYNIKTKGPISLILLDLDNFKNINDLYGHLAGDTV 112

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +++ L  V      + R GG+EFA     ++EQEA  +A  ++  IEN    +    
Sbjct: 113 LQKVAEILKNVTRKVDIIVRWGGDEFAVVLWETTEQEALNIAQRIKTQIENYDF-VFGQS 171

Query: 215 SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + I++S GIA  +         +   AD+ALY+AK  G+ +++  S
Sbjct: 172 RVRISVSIGIASMQESDLNDKDQLFKTADEALYLAK--GKKKLITVS 216


>gi|330951990|gb|EGH52250.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 530

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 86/172 (50%), Gaps = 15/172 (8%)

Query: 107 DCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L      +  E+  LS++  D D+FK+ ND++GH  GD+ +  L+
Sbjct: 336 DKLTGLANRRRFDQFLEVEFKRARRERSLLSLILIDADHFKRYNDHYGHLAGDECLIALA 395

Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +      P  V  R GGEE A    G+ E  A  +A ++ + I + QI   + P   +
Sbjct: 396 RVVEQFIRRPSDVAARYGGEEIAVVLPGTDESNARQVAENILQAIRDEQIEHPASPFGIV 455

Query: 219 TISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           TIS G+A     +R   +    +I  AD+ALY AK  GRNRV   S+I   T
Sbjct: 456 TISLGVATFVGTDRQLDQ--RGLIELADRALYAAKSQGRNRVNVASEIATGT 505


>gi|302342105|ref|YP_003806634.1| diguanylate cyclase with PAS/PAC sensor [Desulfarculus baarsii DSM
           2075]
 gi|301638718|gb|ADK84040.1| diguanylate cyclase with PAS/PAC sensor [Desulfarculus baarsii DSM
           2075]
          Length = 344

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 90/185 (48%), Gaps = 24/185 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
           + + +LS  D L+GL N   F S L         Y   LS++  D+D FK  NDNFGH V
Sbjct: 164 DELRRLSITDSLTGLYNRRQFHSVLHDETARACRYGRPLSLICLDLDNFKPFNDNFGHQV 223

Query: 151 GDKVIAFLSDQLVVVFGTPMFVG-----RLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           GD ++     QLV      +  G     R+GG+EF    + ++E  A I A+  R+   N
Sbjct: 224 GDSIL-----QLVATCARGVLRGQDTAFRVGGDEFCLLMVETNEDNATIAADRFRRAF-N 277

Query: 206 SQINISSGPSIH-----ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            Q  I+    +H     + +S G+A+    E   +++ RAD A+Y AK++G NR V    
Sbjct: 278 DQWPIAMS-FLHKGMEPVYMSLGVAQLQPGEKPDSLLMRADLAMYEAKRAGGNRSVTAGA 336

Query: 261 IENNT 265
             N T
Sbjct: 337 CINRT 341


>gi|254848498|ref|ZP_05237848.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|254844203|gb|EET22617.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
          Length = 537

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%)

Query: 76  ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127
           + ISLLL YI    L+E      +   R ++L  +   D L+ + N   F   L    +E
Sbjct: 325 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 384

Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           K S  ++ FDID FKQIND++GH  GD  +  + D +           R GG+EFA  + 
Sbjct: 385 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 444

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
            + E         +RK++E   + +++   + +TIS G +  C + EP   I+   D  L
Sbjct: 445 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 502

Query: 245 YVAKKSGRNRV 255
           Y++K  GRNRV
Sbjct: 503 YLSKSKGRNRV 513


>gi|332187591|ref|ZP_08389327.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
 gi|332012339|gb|EGI54408.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
          Length = 667

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 89/163 (54%), Gaps = 12/163 (7%)

Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++++R D L+G+ N +AF       +    +  +KL++++ D+D FK++ND+FGH  G+ 
Sbjct: 228 ARMARRDDLTGVANRTAFREHFEERLRLRAASEKKLALLWLDLDRFKEVNDSFGHLAGNA 287

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-S 212
           ++  ++ +L  V G    V RLGG+EFA     +  Q A  +      I+++ + ++  +
Sbjct: 288 LLVSVARRLEAVLGDHGIVARLGGDEFAVICCIADAQAAGRIGT---AILDSVRQSVRFN 344

Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           G  +  T S GIA    +     T++  AD ALY AK+ GR R
Sbjct: 345 GHELRTTASIGIAIAPDNGSDADTLLKNADLALYRAKEKGRGR 387


>gi|288549379|ref|ZP_05966896.2| hypothetical protein ENTCAN_05250 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318873|gb|EFC57811.1| HmsT protein [Enterobacter cancerogenus ATCC 35316]
          Length = 305

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 121/256 (47%), Gaps = 20/256 (7%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN---------LSLVIIS 75
           H+  +  ++   +FI ++ F +NI  F +   P + +   L ++          +L +++
Sbjct: 48  HSTYLIMALLTVLFIGSLAFASNIKAFTLHSLPAFIVCLWLSDHDSWIRMMFFFALPVVA 107

Query: 76  ITISLLL----GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NE 127
           I I  +L       + ++L  L      ++ LS +D L+GL N     S L +     N 
Sbjct: 108 IGIHHVLQRRNDKFAQALLSRLLEERETLTDLSMMDPLTGLYNRRGLQSRLDNLPTPDNG 167

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           +  ++  DID+FK  ND++GH +GDK +  +S  +     +   V R GGEEF       
Sbjct: 168 EHFVLLLDIDHFKAYNDHYGHMMGDKALMRVSAAIRDAVRSRDIVARFGGEEFMVLLSNI 227

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALY 245
           S + A   A  +R+ + + +I      S+  ++TIS GI+     E     + +AD+ALY
Sbjct: 228 SLEHARQTAEHIRQKVYDLKIPHMFNESVATNVTISIGISI-YQNEDAERALEKADKALY 286

Query: 246 VAKKSGRNRVVCFSDI 261
            AK  GRN ++   ++
Sbjct: 287 EAKHMGRNNILLSDEL 302


>gi|300313424|ref|YP_003777516.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1]
 gi|300076209|gb|ADJ65608.1| GGDEF domain containing protein [Herbaspirillum seropedicae SmR1]
          Length = 372

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 15/180 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           E  I+  R+  +   D L+G+ N           ++        LS +F DID+FK++ND
Sbjct: 188 ENVINNERLKHIGLTDPLTGVNNRRYIEQRMQEEVARSQRDRSALSCLFIDIDHFKRVND 247

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD V+  ++ ++         +GR GGEEF      ++ ++AA +A  +R  + 
Sbjct: 248 QFGHQSGDDVLREVAARIKKELRLSDALGRFGGEEFVVLLTHATREDAARIAERIRAGVC 307

Query: 205 NSQINIS-SGPSIHITISAGIA-------ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  + I  S   + IT S G A        R   E    ++  ADQALY AK++GRNRV+
Sbjct: 308 SRGVMIEGSRDPLKITASIGAAALTPPDRSRPAAEVKQAMLKAADQALYQAKEAGRNRVM 367


>gi|289207221|ref|YP_003459287.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
 gi|288942852|gb|ADC70551.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
          Length = 433

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 10/156 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N +AF   L    E L       ++ +DID FK IND +GH  GDKV+  +++
Sbjct: 271 DSLTGLPNRTAFERYLDGLREDLGAEQPACLLVWDIDRFKAINDEYGHSAGDKVLKAVAE 330

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHIT 219
            L     +  FV R GGEEF    L S        A+ +R+ ++  ++ + +G + + +T
Sbjct: 331 ILAEGVRSEDFVARYGGEEF-VMILTSDPDTCQRRADSIREAVD--RLIVRAGKTRLRVT 387

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ISAG+      +  + I   AD AL  AKK GR+RV
Sbjct: 388 ISAGMCPIAAGQSTAAIFDAADHALLQAKKLGRDRV 423


>gi|91210117|ref|YP_540103.1| hypothetical protein UTI89_C1088 [Escherichia coli UTI89]
 gi|237706988|ref|ZP_04537469.1| diguanylate cyclase [Escherichia sp. 3_2_53FAA]
 gi|91071691|gb|ABE06572.1| hypothetical protein YcdT [Escherichia coli UTI89]
 gi|226898198|gb|EEH84457.1| diguanylate cyclase [Escherichia sp. 3_2_53FAA]
          Length = 496

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 21/164 (12%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI      
Sbjct: 326 DSLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVI----KT 381

Query: 162 LVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISS 212
           +V + G  +       R+GGEEF         + A  LA  +R+ +E     N +  I  
Sbjct: 382 VVSIIGKSIRPDDLFARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQ 441

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              + I+I A + ++    P   I   AD ALY AK++GRN+VV
Sbjct: 442 --KVTISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 482


>gi|84687739|ref|ZP_01015611.1| two component diguanylate cyclase [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664240|gb|EAQ10732.1| two component diguanylate cyclase [Rhodobacterales bacterium
           HTCC2654]
          Length = 456

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 13/162 (8%)

Query: 107 DCLSGLLNH---SAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      +++ +    G+     +++  D+D+FK +ND FGH  GD V+   +
Sbjct: 290 DPLTGLFNRRYADGYLARMQKEHGATRRSCAMLLLDLDHFKSVNDRFGHLAGDDVLVETA 349

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
            +L         V R+GGEEF      ++  EA + A  LR  + ++ ++   G + I +
Sbjct: 350 RRLKATLREIDLVARIGGEEFLVVLRDTTGDEARLTAERLRAAVADTPVDARDGQTPISV 409

Query: 219 TISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVC 257
           T+S G+A  C    IS    +  +AD+ALYV+K  GRN V C
Sbjct: 410 TLSIGMAL-CSNS-ISNPRELWDQADRALYVSKAGGRNIVTC 449


>gi|126175898|ref|YP_001052047.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|125999103|gb|ABN63178.1| diguanylate cyclase [Shewanella baltica OS155]
          Length = 460

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 83/177 (46%), Gaps = 14/177 (7%)

Query: 92  ELFISYNR----ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            L+++  R    + Q S  D L+GL N     S L         + E L ++  D+D+FK
Sbjct: 273 RLYVATQRANESLYQQSVKDTLTGLFNRRYLESQLAIHIDHAKRHKEPLCLLVLDVDHFK 332

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND  GH  GD  +  ++ QL      P  F+ R GGEEF      +  ++   +A  L
Sbjct: 333 AFNDQHGHLAGDDCLVAVAKQLEQSLYRPADFIARYGGEEFVVVLPHTDAKDGMQIAERL 392

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRV 255
           R  +   +I    G  + +TIS G A   H E  + +++  AD ALY AK +GRN V
Sbjct: 393 RLNVSAKKIEY-QGQLLSVTISIGCAVLRHSEETAQSLLIAADSALYQAKAAGRNCV 448


>gi|114562967|ref|YP_750480.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
 gi|114334260|gb|ABI71642.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
          Length = 751

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 82/166 (49%), Gaps = 22/166 (13%)

Query: 104 SRIDCLSGLLNH-------SAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDK 153
           S  D L+GL N         A I S  S N   +  S++  DID+FKQIND  GH  GD 
Sbjct: 315 SNYDQLTGLSNRKYLFESLQAMIDSEDSVNGCKQDFSLMLMDIDHFKQINDTLGHDNGDL 374

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-----LANDLRKIIENSQI 208
           V+ F++ +L+      + + R+  +EFA    G    E+ I     L N+L+K+      
Sbjct: 375 VLKFVAQRLLSAIPDNVLIARIAADEFALVLPGKMCSESLISLFDDLTNELKKLF----- 429

Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
            I  G  + +++S G+A   H  + +  I+  A QA+Y AK  GRN
Sbjct: 430 -IVGGQDVMLSMSTGLARYPHDADNVEQILNCATQAMYNAKSRGRN 474


>gi|315178862|gb|ADT85776.1| hypothetical sensory box/GGDEF family protein [Vibrio furnissii
           NCTC 11218]
          Length = 636

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 21/169 (12%)

Query: 97  YNRISQL---SRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQIND 144
           YN I +L   S  D  + L N   F  +L  Y              +   DID FK IND
Sbjct: 459 YNAIVELKERSERDPATSLWNKKKFEHTLQYYARLKQRYPNQPPTCLAIIDIDSFKAIND 518

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH VGD+VI +++ QL  +     F+ R+GG+EFA     +   +A        K+++
Sbjct: 519 SLGHTVGDEVILYVAIQLQSLLRDTDFIARIGGDEFAVIIQHTDIHQAV-------KLMQ 571

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
                ISS P   +T+S G+AE   + P +     AD+A+Y +K+ G+N
Sbjct: 572 RVCTAISSWPQHKVTVSVGVAEVTAEAPQTCT--NADKAMYRSKRKGKN 618


>gi|300691153|ref|YP_003752148.1| diguanylate cyclase (GGDEF domain) [Ralstonia solanacearum PSI07]
 gi|299078213|emb|CBJ50860.1| putative diguanylate cyclase (GGDEF domain) [Ralstonia solanacearum
           PSI07]
          Length = 534

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 91/191 (47%), Gaps = 20/191 (10%)

Query: 84  YISGSILKELFISYNRI--SQLSRI------DCLSGLLNHSAFISSL-----GSYNEKLS 130
           YI    LK   +   R+  S+L+R+      D L+GL N     ++L         +  S
Sbjct: 328 YIEAHRLKRALLRGTRLTSSRLARLNHEALTDPLTGLYNRRGVANALRLHAGAGQPQPFS 387

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
            V  D+D+FK+IND  GH VGD+V+  ++  +          GR+GGEEF     G++  
Sbjct: 388 AVTLDVDHFKRINDRNGHDVGDQVLKHIAALIREQARHGDITGRIGGEEFIILLPGATPD 447

Query: 191 EAAILANDLRKIIENSQINISSGPSIH-ITISAGIAE-RCHKEPISTIIYRADQALYVAK 248
            A   A  LR+ +E         P+   +T+S G+A        +  ++  +D ALY AK
Sbjct: 448 GAFKTAERLRRAVE-----ARPNPTGQVVTVSLGVAHYPLSSGEVDAVLKLSDLALYQAK 502

Query: 249 KSGRNRVVCFS 259
           ++GRNR V + 
Sbjct: 503 RNGRNRTVLYQ 513


>gi|296102510|ref|YP_003612656.1| diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295056969|gb|ADF61707.1| diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 364

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 82/168 (48%), Gaps = 7/168 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           +L IS  R+  L+  D L+   N       + +    N+  S++  DIDYFK  ND +GH
Sbjct: 196 QLLIS--RLDALAHQDPLTKTANRRMMEVVLENAVEQNKAFSLIMLDIDYFKLYNDTYGH 253

Query: 149 PVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
             GD  +  ++  L     TP   V R GGEEF        E  A  +A  ++  +  + 
Sbjct: 254 QAGDDCLTRVAQVLKQAVRTPDDVVSRYGGEEFVVILFNCPENVAQQVARRIQDGLRAAA 313

Query: 208 I-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           I + +S  S H+T+S GIA          +I RAD ALY AK++GR+R
Sbjct: 314 IPHGASKVSEHVTVSMGIAGIAPGLAGPELIARADAALYRAKEAGRDR 361


>gi|163749530|ref|ZP_02156778.1| GGDEF domain protein [Shewanella benthica KT99]
 gi|161330939|gb|EDQ01866.1| GGDEF domain protein [Shewanella benthica KT99]
          Length = 518

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 20/169 (11%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +L+ +D L+ L N +A    +         + + L +   DID+FK INDNFGH  GDK
Sbjct: 354 QKLNLLDTLTQLPNRAALEERMEQEYRNYQRHKQPLWVAVADIDHFKTINDNFGHSTGDK 413

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  ++  L        FV R GGEEF             + A D+ +++   +  + S 
Sbjct: 414 ALQVIAMALKNSLRDTEFVARYGGEEFVFII-------PDVNATDIEQLLNRVREKVKSI 466

Query: 214 P------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           P       I +T+S G A+  + E I+    RAD ALY AK   R+RV+
Sbjct: 467 PFKFKNQRITVTVSIGAAQIINNELINETFDRADAALYRAKHESRDRVI 515


>gi|163850760|ref|YP_001638803.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163662365|gb|ABY29732.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 811

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 11/172 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I+ L+  D L+GL N + F    G       S   ++ +++ D+D FK++ND  GH  GD
Sbjct: 372 IAYLATRDPLTGLSNRAVFHDVAGEACTASMSGGPRVHLLYLDLDGFKKVNDTAGHCAGD 431

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++  ++D+L         V RLGG+EFA    G    EA ILA  +  I    +  +  
Sbjct: 432 DLLRQVADRLCASVDANAQVFRLGGDEFAILHRGRESAEAEILAEAV--IASLHRPYLIE 489

Query: 213 GPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF-SDIE 262
           G    I +S GIA        +  ++ +AD ALY AK++GR R  CF +D+E
Sbjct: 490 GMQAEIGVSIGIARAPQDATELQDLMRKADLALYTAKEAGRGRWHCFEADLE 541


>gi|37675941|ref|NP_936337.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37200481|dbj|BAC96307.1| GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 639

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 93/179 (51%), Gaps = 15/179 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQIND 144
           S+ +EL     R++ ++  D L+GL N S    SL + +++     ++F D+D FK +ND
Sbjct: 466 SVEREL----KRLNYVANHDPLTGLANRSHAFQSLQTEHDQGKDQYLLFLDLDGFKAVND 521

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH +GD ++  ++ +L         V RL G+EF         ++A      + +I+E
Sbjct: 522 QFGHAIGDDLLRVVAKRLKNSVFNRDLVARLAGDEFLIGI-----RDAHTYVPVVERILE 576

Query: 205 NSQINIS-SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260
             Q  IS  G    +T S G++    K+ +S    I+ AD+A+YVAK+ G+N+  C  D
Sbjct: 577 QLQQPISIDGCLCDVTASIGVSHWAVKDGVSLEERIHHADEAMYVAKRLGKNQYCCLQD 635


>gi|332670800|ref|YP_004453808.1| diguanylate cyclase with PAS/PAC sensor [Cellulomonas fimi ATCC
           484]
 gi|332339838|gb|AEE46421.1| diguanylate cyclase with PAS/PAC sensor [Cellulomonas fimi ATCC
           484]
          Length = 522

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 11/167 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q SR D L+GL N  +    L +  E+       LS+V  D+D+FK +ND  GH VGD+V
Sbjct: 337 QASR-DGLTGLHNRRSLAQRLTTAVEQSAGTGAPLSMVLLDLDHFKTVNDTHGHAVGDRV 395

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  L    G      RLGGEEF     G    +A   A  LR     +++ + +G 
Sbjct: 396 LREVAALLAAATGPGEIAARLGGEEFVLLLPGVDVVDATRRAERLRT--RCARLAVPAGD 453

Query: 215 -SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            ++ +T+SAG+A          ++  AD A+Y AK +GR+RV    D
Sbjct: 454 VTLTLTLSAGVAAHAAGGTPDDLLRAADDAMYAAKAAGRDRVTAAPD 500


>gi|303246217|ref|ZP_07332497.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio fructosovorans JJ]
 gi|302492280|gb|EFL52152.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio fructosovorans JJ]
          Length = 300

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 89/177 (50%), Gaps = 15/177 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           EL  + + + + + ID L+ + N   F + L     +       LS++  DID+FK+ ND
Sbjct: 122 ELKRARDLLEEQAFIDSLTAIPNRRRFDAVLDKEWRRAQRNGAPLSLILLDIDFFKKYND 181

Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           N+GH  GD  +  +   L   V     FV R GGEEFA    G+  Q A   ++ +R  I
Sbjct: 182 NYGHQQGDDCLRRVGWSLKESVRRAADFVARYGGEEFAVILPGTDTQGALDASDTIRLRI 241

Query: 204 ENSQI-NISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  I +  S  + H+T+S G+A    ER H      II  ADQALY AK+ GRN V
Sbjct: 242 SSLAIPHEHSSVAPHVTVSLGVATSYPERNHGP--GEIIDAADQALYRAKEEGRNTV 296


>gi|316932923|ref|YP_004107905.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
 gi|315600637|gb|ADU43172.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
          Length = 357

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 87/177 (49%), Gaps = 17/177 (9%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNH-----------SAFISSLGSYNEKLSIVFFDIDYF 139
           ++L  +   + +LS  D L+G+ N            ++ + SLG      S++  D+D+F
Sbjct: 184 RDLRRANAALERLSATDALTGVFNRRYLDELIEQETASIVPSLGQ-----SVLMIDVDHF 238

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND+ GH  GD+ +  +   +     +   V R GGEEFA    G  + E    A  L
Sbjct: 239 KLFNDHGGHAAGDRCLQQIVTAVRRNLRSCDVVVRYGGEEFAVVLPGLDQAELQETAERL 298

Query: 200 RKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              ++  +I +   G +  +TIS GIA     E ++  I RADQ+LY AK+ GRNRV
Sbjct: 299 CHAVKELKIAHPGLGEAEIVTISVGIAPAVPAETLADAIQRADQSLYRAKRGGRNRV 355


>gi|183179370|ref|ZP_02957581.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|183012781|gb|EDT88081.1| GGDEF family protein [Vibrio cholerae MZO-3]
          Length = 392

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 102/198 (51%), Gaps = 18/198 (9%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----I 119
           I+V+NL   II  T+ +L       + +E  I ++R+  +   D L+G  N   F     
Sbjct: 201 IVVQNLFFFIILGTMLMLF------LFEE--IEWHRLRSIQ--DELTGAFNRRHFKEQVQ 250

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
             L    +K  +   DID+FKQIND++GH +GD VI ++   L  +  T   V R GGEE
Sbjct: 251 KKLKQSKQKSMVALVDIDHFKQINDSYGHDIGDSVITYVVRHLESLALTECLVARYGGEE 310

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIY 238
           FA  A  +  +  +   + +R  I +   ++   P  + ++I A I E  H+     ++ 
Sbjct: 311 FAIFASENDFERVSQALDSVRDAI-SVGFHVEQQPLKVSVSIGAVIFESSHE--YGEVLR 367

Query: 239 RADQALYVAKKSGRNRVV 256
           +AD+ALY AK+ GRNR++
Sbjct: 368 QADKALYQAKQQGRNRIM 385


>gi|104782182|ref|YP_608680.1| diguanylate cyclase [Pseudomonas entomophila L48]
 gi|95111169|emb|CAK15889.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           entomophila L48]
          Length = 524

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 17/181 (9%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           +I + L  ++  +  ++  D L+GL N           I       + L++V FD+D+FK
Sbjct: 332 AIERALHQAHQTLKAMALTDSLTGLGNRRRLDAVLEPEIRRARRQGQSLALVMFDLDHFK 391

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GHP GD  +    + L      P  +  R GGEEF      +  Q AA++  ++
Sbjct: 392 PYNDRYGHPAGDACLRQFGELLRQALKRPGDLAVRYGGEEFTLLLPDTDTQGAALIVQEI 451

Query: 200 RKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRN 253
              + ++ I     P   ++ SAGIA      E    E + T    AD+ALY AK+ GR+
Sbjct: 452 LHALRHAAIEHLGSPLGQVSASAGIAVAAPSLENVTPENLMTA---ADEALYTAKRQGRD 508

Query: 254 R 254
           R
Sbjct: 509 R 509


>gi|148545650|ref|YP_001265752.1| diguanylate cyclase [Pseudomonas putida F1]
 gi|148509708|gb|ABQ76568.1| diguanylate cyclase [Pseudomonas putida F1]
          Length = 425

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 126/283 (44%), Gaps = 39/283 (13%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTF---MIYFSIFFSIFIATVI--FIANIFLFYIGL 55
           + +S  + L  WL  E    +   H      + + +F  +FI  V+    A   L    L
Sbjct: 141 LQQSYPEALLTWLA-EIRWPALHGHWMSLIQMVYPLFLGVFILLVVQYLRAPRPLHAAQL 199

Query: 56  TPFYGLEYILVENLSL-VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
               G+ ++L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL  
Sbjct: 200 IGLLGIFWMLPQTFILPFTLNIMCSQVMLMIAAAVAHEAY-------QMAFRDELTGLPG 252

Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
             A    +        I   D+D+FK+ ND  GH VGD+V+  ++ +LV   G       
Sbjct: 253 RRALNERMQRLGRNYVIAMTDVDHFKKFNDTHGHDVGDQVLRLVASRLVTGGGRAYRY-- 310

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-------------------SSGPS 215
            GGEEFA    G +  E       +R++I N  +++                   S+G +
Sbjct: 311 -GGEEFALVFAGKTAAECVPHVEAVREVIANYVMHLRDQHNRPQDDTAGRQRRAGSAGGT 369

Query: 216 IHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +TIS G+AER   H+ P   ++  ADQALY AK +GRN V+
Sbjct: 370 VSVTISIGVAERQADHRNP-EAVLKSADQALYSAKGAGRNCVM 411


>gi|330873610|gb|EGH07759.1| response regulator [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 551

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 10/157 (6%)

Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +      S  S  E   + F   DID+FK++ND+ GHP+GD+VI  L+
Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRREGKPLCFAMLDIDHFKRVNDSHGHPMGDRVIKSLA 438

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L        F+GR GGEEFA     +    A  + +++R     ++I+  + P+ +  
Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIHNAHKVLDEIRHRF--AEIHYPAQPADLFC 496

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T SAG+      +   ++  +AD ALY AK +GRN+V
Sbjct: 497 TFSAGVVSLGADDDSLSLASQADIALYRAKHAGRNQV 533


>gi|134094611|ref|YP_001099686.1| hypothetical protein HEAR1387 [Herminiimonas arsenicoxydans]
          Length = 832

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 18/179 (10%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDID 137
           I+   + EL I Y  +      D L+ L N    +++L +  E        L+++F D+D
Sbjct: 387 ITKRKMTELQIEYQAMH-----DMLTDLPNRRYLVNTLATAMETSRQQQSSLTMLFCDLD 441

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK +ND  GH  GD+ +  +S ++V V     FV R GG EF      SS  E++I A 
Sbjct: 442 FFKSVNDTHGHDFGDQCLLEISKRIVAVLPESDFVARFGGNEFVILT-NSSLAESSIKAK 500

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNR 254
            + + +  S+  +    ++ I +S GIA+    H+ P + +I  AD A+Y AK+ GRNR
Sbjct: 501 AIARAV--SERLVFENVAVKIQVSIGIAQLSPDHQVP-ADLIREADAAMYQAKERGRNR 556


>gi|332139907|ref|YP_004425645.1| sensory box protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549929|gb|AEA96647.1| sensory box protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 720

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 5/165 (3%)

Query: 99  RISQLSRIDCLSGLLNHS---AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+ QL+  D L+GL N +     I+ L    +   +VF D+D FK INDN GH  GD  +
Sbjct: 292 RLRQLALHDELTGLSNRNFLRESITGLVESKKPFVLVFIDLDGFKAINDNAGHERGDIEL 351

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +  QL  +FG    VGR GG+EF A     + ++ A  +  L   IE   I++ S   
Sbjct: 352 QRVGAQLTAMFGPIGEVGRWGGDEFIAVLPSQTCEKIAEKSQQLIHHIEEDVISVKSS-E 410

Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + ++ S GIA+   H + I  +I  AD A+Y AK+ G+ +   + 
Sbjct: 411 LRLSASIGIADFPAHSDSIEGLIQCADAAMYRAKELGKGQAFIYE 455


>gi|90422286|ref|YP_530656.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
 gi|90104300|gb|ABD86337.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
          Length = 501

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 21/175 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
            R+ +LS  D L+GL N   F +++ +  ++       ++++  D D+FK  ND+FGH  
Sbjct: 326 QRLEELSVTDPLTGLTNRRKFDAAIETEWQRAQRQQTPVALLMIDADHFKGYNDSFGHQA 385

Query: 151 GDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GD+++  ++   V +  +    G    R GGEEFA    G S   A  +A  +R  +E  
Sbjct: 386 GDQMLIGIA---VCIADSVHRAGDCAARFGGEEFAVLLPGLSAYAALSVAETIRGKVEQW 442

Query: 207 QINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I+ +      +TIS G A        P S ++  AD+ALY AK SGRNR V  S
Sbjct: 443 SIDQTG-----VTISVGTASITPGPATPWSVLVEAADKALYAAKASGRNRSVVAS 492


>gi|330963451|gb|EGH63711.1| response regulator [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 551

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 10/157 (6%)

Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +      S  S  E   + F   DID+FK++ND+ GHP+GD+VI  L+
Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRREGKPLCFAMLDIDHFKRVNDSHGHPMGDRVIKSLA 438

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L        F+GR GGEEFA     +    A  + +++R     ++I+  + P+ +  
Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIHNAHKVLDEIRHRF--AEIHYPAQPADLFC 496

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T SAG+      +   ++  +AD ALY AK +GRN+V
Sbjct: 497 TFSAGVVSLGADDDSLSLASQADIALYRAKHAGRNQV 533


>gi|330447520|ref|ZP_08311168.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491711|dbj|GAA05665.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 435

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 93/195 (47%), Gaps = 33/195 (16%)

Query: 72  VIISITISLLLGYISGSI--LKELFISYNRISQLSRIDCL-----SGLLNHSAFISSLGS 124
           ++ S+ ++L++GYIS S+  +  L+   N ++Q  R D +       +LNH A       
Sbjct: 262 LLFSLILTLVIGYISNSLNFVINLYQKDN-MTQCIRRDIIEPKLRKKMLNHQA------- 313

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
                 I+  DID FK INDN+GH  GD+VI  +++ L           R GGEEF    
Sbjct: 314 ------ILMVDIDRFKSINDNYGHDYGDQVITTVAEILKDNIRKADKCIRWGGEEFMLIL 367

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRAD 241
                Q     A  LR  IE       S   + IT S G+A   + C     S ++ RAD
Sbjct: 368 NIKDAQVVKNKAEQLRSAIEQ-----QSALDMKITASIGVAIAEQNC----FSQVLERAD 418

Query: 242 QALYVAKKSGRNRVV 256
            ALY AK +GRN+VV
Sbjct: 419 MALYHAKNNGRNQVV 433


>gi|323704500|ref|ZP_08116078.1| diguanylate cyclase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535962|gb|EGB25735.1| diguanylate cyclase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 297

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 15/217 (6%)

Query: 50  LFYIGLTPFYGLE-YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           L+ +  TPFY     I+VE L       T + L+  I     + ++   N +++L   D 
Sbjct: 87  LYLVTSTPFYTDSGKIVVELLK----DSTDAGLIEDIKNLTSQNIYDKVNELNELVVKDG 142

Query: 109 LSGLLNHSAFISSL------GSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GL N       L       S N   +SI+  DID+FK++ND +GH  GD+ + F +  
Sbjct: 143 LTGLYNRRFVDERLPVDILRASLNTMPVSIIMADIDFFKKVNDTYGHIAGDETLKFFASI 202

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +        +  R GGEEF      + + EA  +A  +RK IE+S I I     I IT S
Sbjct: 203 IQSNIRKDDWAARYGGEEFLICLKNTDKNEAYEIAERIRKSIESSTI-IYKDKEIKITSS 261

Query: 222 AGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            G+     + E    +I + DQ LY AKK  RN+V+ 
Sbjct: 262 FGVYTFEGNYENYLDVIEKTDQKLYEAKKK-RNQVMA 297


>gi|323488359|ref|ZP_08093607.1| diguanylate cyclase [Planococcus donghaensis MPA1U2]
 gi|323398017|gb|EGA90815.1| diguanylate cyclase [Planococcus donghaensis MPA1U2]
          Length = 325

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 13/174 (7%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFK 140
           G+  +EL      + QL+  D L+G  N       L  +        +++++  DID+FK
Sbjct: 152 GNKQQELLALNLELQQLAITDSLTGSKNRRYLEERLTHFLVQAEKGREVTVLILDIDHFK 211

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND  GH +GD V+  L+ +L  V G+   V R GGEEF         +E     N + 
Sbjct: 212 RVNDTHGHHIGDAVLKELARRLEEVVGSTGIVTRFGGEEFVIIIPDVGAKEGLAKGNIIC 271

Query: 201 KIIENSQ-INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           K +E++  IN+       +T+S G+A     +  S+ + RAD  LY AK  GRN
Sbjct: 272 KYMESANWINVP------VTVSIGVAVHLPGDDTSSWLSRADSYLYKAKADGRN 319


>gi|288918031|ref|ZP_06412389.1| diguanylate cyclase [Frankia sp. EUN1f]
 gi|288350549|gb|EFC84768.1| diguanylate cyclase [Frankia sp. EUN1f]
          Length = 424

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 99/197 (50%), Gaps = 11/197 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--E 127
           S V++ I + L+L    G    EL +S  R    +R+  L G     A   +  S+    
Sbjct: 220 SPVLLVIAVPLVLLLRRGLAHAEL-LSAARTDAKTRLATL-GYWRQVATAETARSHGLGR 277

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            L ++  DID+FKQ+ND  GH  GD V+  ++D L         VGR GGEEF    +G 
Sbjct: 278 PLGVLLVDIDHFKQVNDRHGHIDGDVVLLAVADALRHATRPQDLVGRFGGEEFVVLLVGV 337

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC---HKEP--ISTIIYRADQ 242
               AA +A  +R  +   +++++ G    +T+S G+A      H +   ++ ++ RAD 
Sbjct: 338 DLAAAAAIAERIRDSVAAVRVHLTRGEQ-RVTVSVGVASGAPASHDDHGVVTDLLERADA 396

Query: 243 ALYVAKKSGRNRVVCFS 259
           ALY AK+ GR+R VC +
Sbjct: 397 ALYRAKREGRDR-VCLA 412


>gi|256821336|ref|YP_003145299.1| diguanylate cyclase [Kangiella koreensis DSM 16069]
 gi|256794875|gb|ACV25531.1| diguanylate cyclase [Kangiella koreensis DSM 16069]
          Length = 393

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 9/167 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFF--DIDYFKQINDNFGHPV 150
            R+   +  D L+G+ +   F+         S  EK     F  D+DYFK++ND +GH  
Sbjct: 227 ERLRTAAESDALTGVDSRGHFMQRAEALLQRSRFEKAPFCLFMIDVDYFKRVNDTWGHTC 286

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD++++ +++           +GR GGEEF      ++  EA  +A+ L+  +    ++ 
Sbjct: 287 GDQILSKIAEVCQHSLRPNDIIGRFGGEEFVVGLPNTNTSEAKAVADRLKDNVAALTLD- 345

Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                + ++++ GIA      + +  +I RAD  LYV K+ GRNRVV
Sbjct: 346 GEMSELRLSVTIGIAVADTEDDDLDVLITRADNMLYVGKREGRNRVV 392


>gi|153833419|ref|ZP_01986086.1| diguanylate cyclase [Vibrio harveyi HY01]
 gi|148870307|gb|EDL69237.1| diguanylate cyclase [Vibrio harveyi HY01]
          Length = 373

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 85/181 (46%), Gaps = 17/181 (9%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           KEL     ++ +L+  D LSGL N   F       +S   + N+ +S V  D+DYFKQ+N
Sbjct: 193 KELRCLNKKLQELAITDELSGLYNRRYFNIMTPDILSKAQAGNQTVSFVSIDLDYFKQLN 252

Query: 144 DNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           D  GH  GD    KV A LS Q     G      R+GGEEF    +GS        A  +
Sbjct: 253 DELGHLKGDEAITKVGALLSSQFN---GVDEIAFRMGGEEFLIVLVGSEHHRCVRRAEKV 309

Query: 200 RKIIENSQINISSGPSIH-ITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRVV 256
           R+ I    I        H +T S G+  +  +  +S   +  + D+ LY AK +GRN+VV
Sbjct: 310 RESIATLSIQCDRHEQRHFLTSSIGVYSQQSEANVSIRYFLDKVDKCLYKAKLTGRNKVV 369

Query: 257 C 257
            
Sbjct: 370 A 370


>gi|89093469|ref|ZP_01166417.1| two-component response regulator [Oceanospirillum sp. MED92]
 gi|89082159|gb|EAR61383.1| two-component response regulator [Oceanospirillum sp. MED92]
          Length = 419

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 11/167 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL I   ++ + SR D L+ +LN +AF       +     YN   +++F D+D FKQ+ND
Sbjct: 252 ELIIRQQKLERASRQDALTKVLNRNAFNDHLRQALEHFNRYNTAATLIFIDLDDFKQVND 311

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH VGD  +  L+  L         +GR GG+EF      S E +A    N   ++ +
Sbjct: 312 NYGHLVGDNCLIELARTLRSSVRKTDLLGRYGGDEFVVLLNNSIEHDAEEFIN---RVGD 368

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250
              + I     I++ IS G+ +   + E I   I  AD  +Y +K S
Sbjct: 369 RITLLIEEEQKINVGISYGVHQLTREIESIDQWIDHADHLMYQSKLS 415


>gi|127512206|ref|YP_001093403.1| diguanylate cyclase [Shewanella loihica PV-4]
 gi|126637501|gb|ABO23144.1| diguanylate cyclase [Shewanella loihica PV-4]
          Length = 593

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 17/178 (9%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDIDYFKQIND 144
           +F+   +  ++S+ D L+G+LN           F+  L ++    S+V FD+D+FK IND
Sbjct: 404 MFVQKRKYKRISQRDPLTGVLNRGTGQDFAENLFVDVL-AHRSMFSVVMFDLDHFKAIND 462

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD  +  + D +     +     R+GGEEFA     + EQ A  +A   R  IE
Sbjct: 463 TYGHSAGDWALRRVVDAVTPSLKSRDLFVRMGGEEFALFLPYTDEQAALKIAKQCRVAIE 522

Query: 205 NSQINISSGP---SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
                I + P    + IT S G+     ++  +  ++ R D A+Y AK +GRN VV +
Sbjct: 523 ----AIQTRPHYSDLSITASFGVCTSVEEDLSLDPLMKRVDIAMYQAKGNGRNCVVMY 576


>gi|121728541|ref|ZP_01681564.1| chase domain protein [Vibrio cholerae V52]
 gi|121629205|gb|EAX61645.1| chase domain protein [Vibrio cholerae V52]
          Length = 527

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%)

Query: 76  ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127
           + ISLLL YI    L+E      +   R ++L  +   D L+ + N   F   L    +E
Sbjct: 315 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 374

Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           K S  ++ FDID FKQIND++GH  GD  +  + D +           R GG+EFA  + 
Sbjct: 375 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 434

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
            + E         +RK++E   + +++   + +TIS G +  C + EP   I+   D  L
Sbjct: 435 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 492

Query: 245 YVAKKSGRNRV 255
           Y++K  GRNRV
Sbjct: 493 YLSKSKGRNRV 503


>gi|330963771|gb|EGH64031.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 712

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 18/187 (9%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEK----LSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++ S    NE+    L +
Sbjct: 254 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 310

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF      L   E
Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247
           Q A I    + ++    Q+N   G  I +  S GIA    C    +  ++  AD A+Y A
Sbjct: 371 QAAKIAEKLIERVSGRRQVN---GVDITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 426

Query: 248 KKSGRNR 254
           K++GR +
Sbjct: 427 KRAGRQQ 433


>gi|311106996|ref|YP_003979849.1| diguanylate cyclase [Achromobacter xylosoxidans A8]
 gi|310761685|gb|ADP17134.1| diguanylate cyclase, GGDEF domain protein 14 [Achromobacter
           xylosoxidans A8]
          Length = 390

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 118/263 (44%), Gaps = 22/263 (8%)

Query: 4   SLKDFLSIW-LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFI---------ANIFLFYI 53
           +L   ++ W L   ++L S +P       +   ++  A   FI           I L   
Sbjct: 128 ALVSGMTAWELLRCQSLRSLTPLRIATAAAGIHALVYAARAFILPWWVAEHGPGIHLTAS 187

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
            LT + G+ Y +V  ++L      + L+     G +L+E    Y     L+R+       
Sbjct: 188 TLTMYEGVLYSIVLPMTL------LKLVREETHGQLLRESQTDY-----LTRLGNRRWFF 236

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A I   G+    ++++ FD+D FK IND  GH  GD+V+ F ++    V G  + + 
Sbjct: 237 EQGARIIEGGAGRGPVAVLAFDLDQFKAINDRHGHQAGDQVLKFFAESARCVLGPDVLLA 296

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP- 232
           R+GGEEFAA   G   + A +L   + +    +      G  I  T+S G+A+   K P 
Sbjct: 297 RIGGEEFAALLSGQDARRATVLGAAVAQHFAGTVSRRDDGAGIPATVSVGLAQFEDKVPA 356

Query: 233 ISTIIYRADQALYVAKKSGRNRV 255
           ++  +  AD+ALY AK  G NRV
Sbjct: 357 LADALAAADRALYQAKALGGNRV 379


>gi|291618993|ref|YP_003521735.1| PleD [Pantoea ananatis LMG 20103]
 gi|291154023|gb|ADD78607.1| PleD [Pantoea ananatis LMG 20103]
          Length = 535

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 6/152 (3%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+GL N   F      ++E+   S +  DID+FK+IND +GH  GD+V+  L+  L  
Sbjct: 375 DPLTGLNNRRGFYIQAAQHSEEPVQSAIAIDIDHFKKINDRYGHDAGDEVLVSLAGLLRK 434

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
              T   + R GG             +AA +A  +R+ +  +     S     +T+S G+
Sbjct: 435 RCRTLDVISRFGGRSLFCCFPVRHLNDAAAMAERIREAVSKTSFPFISA----MTVSLGV 490

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           A     E    ++ RAD+ALY AK  GRNRV+
Sbjct: 491 ATLSETEDKDALLRRADEALYAAKGDGRNRVM 522


>gi|218676322|ref|YP_002395141.1| hypothetical protein VS_II0547 [Vibrio splendidus LGP32]
 gi|218324590|emb|CAV26119.1| Conserved hypothetical protein [Vibrio splendidus LGP32]
          Length = 489

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 106/210 (50%), Gaps = 16/210 (7%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYN--RISQLSRIDCLSGLLNHSAF 118
           LE  L +N SL++ S+ ++L++  +S   +  L++ +   +I  ++ +D L+GL N   F
Sbjct: 278 LEQELNKNHSLLLASL-MTLVISLLSIIAVLVLYLRHRHLKILDVASLDYLTGLSNRRDF 336

Query: 119 ISSL-------GSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           IS +         Y  K + I+  DID+FK +ND  GH  GD+VI  ++  L        
Sbjct: 337 ISQVKMRILECSPYPLKGVGIILLDIDHFKSVNDLHGHNEGDRVICAVAKVLKQFANENR 396

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            + R GGEEF       +E +   L+ +LR+ +E  +     G  + +T+S G       
Sbjct: 397 LIARYGGEEFIFVTFDCNEYQLYELSEELRRSVEKIE-----GLVLPVTVSVGCRYANAL 451

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             I   I +AD+ALY AKK+GRN    + +
Sbjct: 452 FHIEGTIDQADKALYQAKKNGRNNTQVYRE 481


>gi|193782538|ref|NP_435318.2| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021]
 gi|307300730|ref|ZP_07580505.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti
           BL225C]
 gi|307319141|ref|ZP_07598571.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83]
 gi|193072994|gb|AAK64730.2| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021]
 gi|306895248|gb|EFN26004.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83]
 gi|306904264|gb|EFN34849.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti
           BL225C]
          Length = 733

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 10/170 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           S   +  L+R D L+GL N ++F      + +  + ++  ++++ D+D FKQ+ND  GHP
Sbjct: 296 SQAELDHLARHDPLTGLANRASFNRLLARVVATSTIDQANALLYLDLDRFKQVNDTLGHP 355

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+++  ++ +L         + R+GG+EF      + + E   L + L   I      
Sbjct: 356 VGDRLMVEVAKRLKET-AAGAAISRIGGDEFTIIVARTRQDEVEKLCDALIAAIRRP-FE 413

Query: 210 ISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           I   P  I ++I   +A     +PI  I  +AD ALY AK +GRNR   F
Sbjct: 414 IDGQPILIGLSIGVAVATGNDADPIE-ITRKADIALYHAKSAGRNRYAVF 462


>gi|149180971|ref|ZP_01859472.1| hypothetical protein BSG1_11041 [Bacillus sp. SG-1]
 gi|148851255|gb|EDL65404.1| hypothetical protein BSG1_11041 [Bacillus sp. SG-1]
          Length = 593

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 10/167 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q S  D L+G  N + F   L         YN+ ++++F DID FK++ND+ GH  GDKV
Sbjct: 221 QKSVTDSLTGSYNSAYFKQKLAEVMKDARYYNQPMALLFCDIDNFKKLNDHEGHLYGDKV 280

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  +         V R GGEEF      +    A  +A  +R ++    +N     
Sbjct: 281 LKQIAKVIHDHVREHDIVCRYGGEEFVIIMRDTDASTATAIAEKVRHMV---ALNGHRSI 337

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              IT+S G+A          I++ ADQA+Y AK  G+NRVV   D+
Sbjct: 338 LTPITMSIGVAVFPQDADEENIVHIADQAMYTAKSLGKNRVVAAQDL 384


>gi|32477591|ref|NP_870585.1| GGDEF family protein [Rhodopirellula baltica SH 1]
 gi|32448145|emb|CAD77662.1| GGDEF family protein [Rhodopirellula baltica SH 1]
          Length = 346

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 14/168 (8%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKL--SIVFFDIDYFKQINDNFGHP 149
           YN +++    D L+G LN    + ++      S   KL  +++  DID+FK +ND  GH 
Sbjct: 182 YNALTR----DALTGALNKRFLMEAIDRELSRSTRAKLELAVIMLDIDHFKSVNDTHGHL 237

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD V+     ++  +  T   + R GGEEF      +   +A  +A   R  I  +   
Sbjct: 238 VGDDVLRTFGKRIQALCRTDDLLARYGGEEFCLLLAATGHHDAMEIAERCRATIAGTPFQ 297

Query: 210 ISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRV 255
            S GP + IT S G++     +P  +  ++  ADQ LY AK +GRN+V
Sbjct: 298 TSIGP-LEITASFGVSVMDPDQPSTVRALLQDADQHLYDAKNAGRNQV 344


>gi|117919199|ref|YP_868391.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117611531|gb|ABK46985.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 646

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 107/207 (51%), Gaps = 22/207 (10%)

Query: 67  ENLSLVIISITISLLLGYISGSILK--ELF----ISYNR-ISQLSRIDCLSGLLNHSAFI 119
           + L+L+  + ++ L++  ++G IL    LF    +  NR +  ++  D L+ L N     
Sbjct: 433 QELALLEKNKSLQLIILLLTGCILAIVSLFAYKQVHRNRHLQTIALTDYLTQLPNRRYIY 492

Query: 120 SSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           +    Y ++       LS++ FD D+FK+INDNFGH +GD+ +  ++     +      +
Sbjct: 493 AKAEQYFQQALKQQTPLSVIIFDADHFKKINDNFGHEIGDQALLTIAQASQALTADRNLI 552

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAE----- 226
           GR+GGEEF      ++ +    LA++L+ +I     IN+     + +T+SAG+A      
Sbjct: 553 GRIGGEEFLILLPNTNAERVWELAHELQTLITRYGAINLPV--ELKLTVSAGVATLNTEL 610

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRN 253
               +  + ++ RAD ALY AK +G+N
Sbjct: 611 GKQDDSFARLLKRADNALYDAKNAGKN 637


>gi|331014538|gb|EGH94594.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 712

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 18/187 (9%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEK----LSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++ S    NE+    L +
Sbjct: 254 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 310

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF      L   E
Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247
           Q A I    + ++    Q+N   G  I +  S GIA    C    +  ++  AD A+Y A
Sbjct: 371 QAAKIAEKLIERVSGRRQVN---GVDITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 426

Query: 248 KKSGRNR 254
           K++GR +
Sbjct: 427 KRAGRQQ 433


>gi|313683100|ref|YP_004060838.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM
           16994]
 gi|313155960|gb|ADR34638.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM
           16994]
          Length = 283

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 17/163 (10%)

Query: 103 LSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +++ID L+ L N ++       FI     Y    S++  D+D FK IND +GHPVGD+V+
Sbjct: 127 MAKIDPLTRLYNRNSIEEFAQLFIDEAQRYQTSFSVIMVDLDDFKHINDVYGHPVGDEVL 186

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             LS     +  +   +GR GGEEF      ++  +A  LA  LR          SS   
Sbjct: 187 KKLSVIFQDLIRSSDRIGRWGGEEFIILCPQTTYLQAKELAERLR-------FGFSSHEF 239

Query: 216 IHI---TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             I   T S G+A    ++ I ++I +AD ALY +K+ G+NRV
Sbjct: 240 EEIGYKTASFGVALFEDEDTIESLIVKADNALYDSKRLGKNRV 282


>gi|240140799|ref|YP_002965279.1| putative diguanylate cyclase (2 GGDEF motifs) [Methylobacterium
           extorquens AM1]
 gi|240010776|gb|ACS42002.1| putative diguanylate cyclase (2 GGDEF motifs) [Methylobacterium
           extorquens AM1]
          Length = 355

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 87/170 (51%), Gaps = 13/170 (7%)

Query: 107 DCLSGLLNHSAFISSL----------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           D L+GL N  +F  SL              +  S++  DID FK+ ND +GH  GD+V+ 
Sbjct: 181 DALTGLGNRKSFEESLRKSVDLQSASAQQGKPASLIVIDIDSFKRFNDLYGHLTGDQVLR 240

Query: 157 FLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INISSGP 214
            ++  +    G     + R GGEEF      +   EA  +A  +R  +   + +  S+G 
Sbjct: 241 LVAIVMREHIGQKNATLARFGGEEFGIVLPETDRVEARAIAERVRIGVTGRELVKRSTGE 300

Query: 215 SI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           S+  +T+S G+A +   +   +++ RAD  L+ AK++GRNR +  +++EN
Sbjct: 301 SLGKVTVSLGVATQREDDNAVSLLERADACLFAAKRAGRNRTLDETEVEN 350


>gi|153827593|ref|ZP_01980260.1| GGDEF family protein [Vibrio cholerae MZO-2]
 gi|149737931|gb|EDM52836.1| GGDEF family protein [Vibrio cholerae MZO-2]
          Length = 306

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 16/180 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L+    ++  LS  D L+GL N    +  L           +    V  DID FK +N
Sbjct: 127 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVN 186

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH VGDKV+  +++ L   F +   V RLGG+EF      +       +A+ + + I
Sbjct: 187 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETDIAGGVYIADQVCRAI 246

Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   I++ +      ++S G+A      + H E    ++  ADQA+Y+AK SG+NRV  F
Sbjct: 247 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHE----LLRAADQAVYLAKNSGKNRVCAF 302


>gi|121588015|ref|ZP_01677767.1| ggdef family protein [Vibrio cholerae 2740-80]
 gi|121547756|gb|EAX57847.1| ggdef family protein [Vibrio cholerae 2740-80]
          Length = 527

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%)

Query: 76  ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127
           + ISLLL YI    L+E      +   R ++L  +   D L+ + N   F   L    +E
Sbjct: 315 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 374

Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           K S  ++ FDID FKQIND++GH  GD  +  + D +           R GG+EFA  + 
Sbjct: 375 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 434

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
            + E         +RK++E   + +++   + +TIS G +  C + EP   I+   D  L
Sbjct: 435 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 492

Query: 245 YVAKKSGRNRV 255
           Y++K  GRNRV
Sbjct: 493 YLSKSKGRNRV 503


>gi|114320172|ref|YP_741855.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226566|gb|ABI56365.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 295

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 69/131 (52%), Gaps = 4/131 (3%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+++  D+D+FK+IND +GH  GD V+   S+ L         VGRLGGEEF A      
Sbjct: 157 LTLLMMDLDHFKRINDKYGHAAGDTVLVAFSEVLRRNLRESDAVGRLGGEEFLAVLPDVD 216

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYV 246
            Q    LA  +R  I   +I      +I +T+S G+A     H E +   I RAD ALY 
Sbjct: 217 LQGGLALAERIRSEIAELRIPWQE-EAIRLTVSIGVAGILAVH-ESLDDTIMRADDALYQ 274

Query: 247 AKKSGRNRVVC 257
           AK +GRNRV  
Sbjct: 275 AKVAGRNRVTV 285


>gi|89901384|ref|YP_523855.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
 gi|89346121|gb|ABD70324.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
          Length = 380

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 7/132 (5%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           +   ++++  D+D+FK+IND +GH  GD+ +     ++  +   P  +GR GGEEF A  
Sbjct: 252 HGHSMALLIMDLDHFKEINDIYGHQAGDQALINFVARVNALLRGPDQLGRFGGEEFVALL 311

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQA 243
             +S  EA  +A  +R           +G +   T+S G+   R   + + T++ RAD A
Sbjct: 312 PETSLDEAIAVAERIRGAC------TLAGQAPACTVSIGVTTNRKDNDSVDTLLARADAA 365

Query: 244 LYVAKKSGRNRV 255
           LY AK +GRNRV
Sbjct: 366 LYRAKAAGRNRV 377


>gi|330956959|gb|EGH57219.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 432

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 101/227 (44%), Gaps = 30/227 (13%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F+ L    +   +L I+   + L+   I+ ++  E +       Q++  D L+GL    A
Sbjct: 206 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 255

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
               +        +   D+D+FK+ ND +GH VGD+V+  ++ +L  +        R GG
Sbjct: 256 LNERMQRLGRNYVLAMSDVDHFKKFNDTYGHDVGDQVLRLVASKLSKITSGGGKAYRYGG 315

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218
           EEFA      +  E     + +R+ I   +I   N  + P                S+ +
Sbjct: 316 EEFAIVFAARTLDECMPHLDAIRETIAQYEIQLRNKDNRPQDDQQGRQRRGGAHTGSVSV 375

Query: 219 TISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDIENN 264
           TIS G+AER  +   +  + + ADQALY AK +GRN VV F  +   
Sbjct: 376 TISIGVAERQPEHRSAEEVLKCADQALYAAKGAGRNCVVAFDQLNRR 422


>gi|229515742|ref|ZP_04405201.1| GGDEF family protein [Vibrio cholerae TMA 21]
 gi|229347511|gb|EEO12471.1| GGDEF family protein [Vibrio cholerae TMA 21]
          Length = 443

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 85/166 (51%), Gaps = 15/166 (9%)

Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+G+ N  AF   L          N KL+++FFD+D FK+IND  GH VGD V+
Sbjct: 269 LSERDSLTGISNRRAFKQQLSHALIKAKRSNMKLALLFFDLDKFKEINDTKGHEVGDLVL 328

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGP 214
             ++ +L        F GRLGG+EF         Q+ + + N   +++E  Q  +  +  
Sbjct: 329 QEIAQRLKGSIRESDFCGRLGGDEFVVCL--DLLQDHSGVINKAYQMLEKLQKPLQLNQE 386

Query: 215 SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S+ I +S G+A   E+  + P   ++  AD+A+Y AK    N V C
Sbjct: 387 SLEIGVSIGVALYPEQATQVP--ELLRIADEAMYTAKHQSGNTVYC 430


>gi|188532751|ref|YP_001906548.1| HmsT (Hemin storage system protein) [Erwinia tasmaniensis Et1/99]
 gi|188027793|emb|CAO95650.1| HmsT (Hemin storage system protein) [Erwinia tasmaniensis Et1/99]
          Length = 365

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 7/178 (3%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQIND 144
           ++++L+      S LS +D L+GL N     + L     ++     ++  DID FK  ND
Sbjct: 176 LVRQLYEEKETYSDLSMLDPLTGLYNRRGLQNRLENVIDNHTGNHYVLLLDIDNFKSYND 235

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH +GD+ +  +S  +     +   V R GGEEF       +E  A   A  +R+ + 
Sbjct: 236 NYGHAMGDQALTRVSVAIRDAVRSRDIVTRYGGEEFLVILTNVNEAIALKQAERVRQFVL 295

Query: 205 NSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + +I    +   + H+TIS G+A     +     +  AD+ALY+AK  GRN V    D
Sbjct: 296 DLEIPHRFNDKVATHVTISVGVAPLIAND-FDKALAHADRALYLAKSQGRNTVFSLHD 352


>gi|118466529|ref|YP_880652.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Mycobacterium avium 104]
 gi|118167816|gb|ABK68713.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Mycobacterium avium 104]
          Length = 1304

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 94/187 (50%), Gaps = 21/187 (11%)

Query: 82  LGYISGSILKELFI----SYNRISQLSR---IDCLSGLLNHSAFISSLGSYNEK------ 128
           LG +  ++L   F+    + N +S+++R    D L+GL N + F+  L     +      
Sbjct: 308 LGILVAAVLARQFVVLVDNQNLLSEVAREAFRDNLTGLANRALFVHRLEQAVARRHPDGT 367

Query: 129 -LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA---AA 184
            ++++  D+D FK +ND  GHP GD+++  ++++L    G    + RLGG+EFAA   A+
Sbjct: 368 PIAVLCLDLDNFKAVNDALGHPAGDELLVRVAERLTAALGDSGTIARLGGDEFAAVIEAS 427

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
           +  S+  A  +       I    I I+  PSI  T+  G A  C    +  ++  AD A+
Sbjct: 428 VDESQAAAHRILEAFTGAILIDGIPITVRPSIGFTVCTG-ASTC---TVDQLLRHADLAM 483

Query: 245 YVAKKSG 251
           Y AK+ G
Sbjct: 484 YAAKREG 490


>gi|221069185|ref|ZP_03545290.1| diguanylate cyclase [Comamonas testosteroni KF-1]
 gi|220714208|gb|EED69576.1| diguanylate cyclase [Comamonas testosteroni KF-1]
          Length = 377

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 104/223 (46%), Gaps = 10/223 (4%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101
           +  +  +F   + +TP    +  L   LSL+ + +  S    + +  +LK L     ++ 
Sbjct: 118 IALLCGMFFMSLAITPSPQWDAPLAVQLSLLPLIVMHSAYASWSNSRMLKTLARQNLQLK 177

Query: 102 QLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            L RID L+ + +         A +    S  E+  ++  DID FK +ND +GH VGD V
Sbjct: 178 LLGRIDPLTTVYSRDYWWKKARAALHQHRSVKEQTCLLVIDIDRFKSVNDLYGHIVGDDV 237

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +   +     +    GR GG+EF      ++ +EA  +A  +R   + +QI +   P
Sbjct: 238 LKLIGLAIRNSLRSNDIAGRYGGDEFTVLCKHTTAREAYSVA--MRICEKIAQIRVRDYP 295

Query: 215 SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            + I+ S G+A        ++  I  AD ALY AK  GR++V+
Sbjct: 296 QLQISASIGVAAADDSFGSVTEWIKAADSALYSAKSGGRDQVM 338


>gi|326794532|ref|YP_004312352.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326545296|gb|ADZ90516.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 454

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 10/161 (6%)

Query: 103 LSRIDCLSGLLNHSAFISS------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           L+  D L+G  N   +         L     + S++  DID+FK+IND +GH +GDKV+ 
Sbjct: 295 LATRDKLTGAYNRHKWDEQIKESLDLAQRGVEFSLIMLDIDHFKKINDEYGHQLGDKVLE 354

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
           +    L         + R+GGEEFA      S ++A  +   +R  IE   +  +  PS 
Sbjct: 355 YFVTSLNTCLRKSDLLFRMGGEEFAVLLPQQSLEKAEQVGERIRTHIET--MEETHIPS- 411

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             T+S GI+     +  ++I+ RAD+ALY +K +GRN V  
Sbjct: 412 -FTVSLGISAYRAADDENSILARADKALYKSKLNGRNTVTL 451


>gi|311106008|ref|YP_003978861.1| diguanylate cyclase [Achromobacter xylosoxidans A8]
 gi|310760697|gb|ADP16146.1| diguanylate cyclase, GGDEF domain protein 12 [Achromobacter
           xylosoxidans A8]
          Length = 395

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 82/178 (46%), Gaps = 12/178 (6%)

Query: 90  LKELFISYNRI----SQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDY 138
           L  + I ++R+     Q +  D L+GL++  A+      Y  +       L+++  DIDY
Sbjct: 204 LGTIMIIHDRMLADREQEASTDFLTGLMSRKAWWLQAERYCAQALRTRRPLTLLLLDIDY 263

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND  GH  GD V+            T   VGR+GGEEFA             +A  
Sbjct: 264 FKRINDTHGHAAGDAVLRHFGLLATATLRTGDHVGRVGGEEFAVLFPDMRSDAVMDVAER 323

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           L   +  +      G +I  T SAG+A+    E +     RAD+ LY AK +GRNR+ 
Sbjct: 324 LLDSVRRTPCA-HGGSTISYTFSAGVADWMPGESLQAFFERADRKLYAAKAAGRNRIT 380


>gi|306520661|ref|ZP_07407008.1| putative signaling protein [Clostridium difficile QCD-32g58]
          Length = 238

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 105/225 (46%), Gaps = 30/225 (13%)

Query: 61  LEYILVENLSLVIISIT--ISLLLGYISGSILK-ELFISYNRI---SQLSRIDCLSGLLN 114
           L + L + +SLVI+S    I+ L  ++S  + +  +F  Y+++    Q   I  ++ LLN
Sbjct: 13  LGFKLYQAMSLVILSTHFFITSLAIFVSTMLYRNRVFTYYDKLLISQQYEEISHINNLLN 72

Query: 115 HSAFISSLGSYN-------------------EKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
                  L   N                   E ++ +  DIDYFKQ NDN+GH  GD  +
Sbjct: 73  DKVMTDDLTKMNNRRYLEDILQKKLISHANQEPITGMMIDIDYFKQFNDNYGHQKGDYCL 132

Query: 156 AFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
             ++ ++++ F +       R GGEEF        E +A + +  LRKIIE+        
Sbjct: 133 QNIA-KVILDFTSSENEHAIRYGGEEFFICIFNCDETDAKLKSECLRKIIESCNFERDDV 191

Query: 214 PSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
           P   +T+S G+  +  ++ I+    I   D+ALY AK+ GRN V 
Sbjct: 192 PLKCVTVSIGVYTKKIEKAITLNEFISNCDKALYTAKEQGRNCVA 236


>gi|260221000|emb|CBA29127.1| hypothetical protein Csp_A10590 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 641

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 15/178 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFK 140
           + + +L ++ +++ +LS  D L+ + N + F  SL + +++ S       ++  DID+FK
Sbjct: 448 AAMDQLRLANDQLQRLSMTDSLTQVGNRAFFDQSLVTEHKRASRLKQPLALLLLDIDHFK 507

Query: 141 QINDNFGHPVGDKVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            IND +GHP GD  +  L+D   Q V   G    + R GGEEFA   + S+  +A  LA+
Sbjct: 508 AINDTYGHPAGDACLRTLADYMRQKVQRAGD--LLARYGGEEFAVLLINSTLGDALDLAD 565

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRN 253
           + R  I   ++ +  G ++  T S G+A          S  +  AD+ALY AK  GRN
Sbjct: 566 EFRADIAGLEV-VFEGRTLRFTASIGVASAIPDMQFTPSQFVGDADKALYEAKHGGRN 622


>gi|254499426|ref|ZP_05112087.1| hypothetical protein LDG_3465 [Legionella drancourtii LLAP12]
 gi|254351325|gb|EET10199.1| hypothetical protein LDG_3465 [Legionella drancourtii LLAP12]
          Length = 1066

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 84/163 (51%), Gaps = 13/163 (7%)

Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G  N +          S L    ++L+I+F D+DYFK IND  GH VGDK++ + S
Sbjct: 641 DPLTGFANRNLLFQIFQQSASRLSREAKQLAIIFLDLDYFKTINDTMGHEVGDKLLIYFS 700

Query: 160 DQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +Q+           RLGG+EF     +L  S Q   I+    +++   +   I  G +IH
Sbjct: 701 EQIKTCLRAGDLPVRLGGDEFVILLDSLDESMQVKVIIDKIYQQL---AAPVIIQGHTIH 757

Query: 218 ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I+ SAGI+        I  ++ +AD ALY AK+ G+N+   +S
Sbjct: 758 ISTSAGISLFPKDATDIQGLLKQADTALYRAKELGKNQYQFYS 800


>gi|153823875|ref|ZP_01976542.1| ggdef family protein [Vibrio cholerae B33]
 gi|126518605|gb|EAZ75828.1| ggdef family protein [Vibrio cholerae B33]
          Length = 245

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 16/180 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L+    ++  LS  D L+GL N    +  L           +    V  DID FK +N
Sbjct: 66  QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVN 125

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH VGDKV+  +++ L   F +   V RLGG+EF      ++      +A  + + I
Sbjct: 126 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETNTAGGVYIAEQVCRAI 185

Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   I++ +      ++S G+A      + H E    ++  ADQA+Y+AK SG+NRV  F
Sbjct: 186 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHE----LLRAADQAVYLAKNSGKNRVCAF 241


>gi|153817746|ref|ZP_01970413.1| ggdef family protein [Vibrio cholerae NCTC 8457]
 gi|153821330|ref|ZP_01973997.1| ggdef family protein [Vibrio cholerae B33]
 gi|229505043|ref|ZP_04394553.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229518405|ref|ZP_04407849.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|255745762|ref|ZP_05419710.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262158959|ref|ZP_06030071.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|126511684|gb|EAZ74278.1| ggdef family protein [Vibrio cholerae NCTC 8457]
 gi|126521148|gb|EAZ78371.1| ggdef family protein [Vibrio cholerae B33]
 gi|229345120|gb|EEO10094.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229357266|gb|EEO22183.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|255736837|gb|EET92234.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262029144|gb|EEY47796.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
          Length = 527

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%)

Query: 76  ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127
           + ISLLL YI    L+E      +   R ++L  +   D L+ + N   F   L    +E
Sbjct: 315 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 374

Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           K S  ++ FDID FKQIND++GH  GD  +  + D +           R GG+EFA  + 
Sbjct: 375 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 434

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
            + E         +RK++E   + +++   + +TIS G +  C + EP   I+   D  L
Sbjct: 435 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 492

Query: 245 YVAKKSGRNRV 255
           Y++K  GRNRV
Sbjct: 493 YLSKSKGRNRV 503


>gi|91794451|ref|YP_564102.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91716453|gb|ABE56379.1| GGDEF domain [Shewanella denitrificans OS217]
          Length = 580

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 77/163 (47%), Gaps = 11/163 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + QL+  D L+GL N  A     G+Y       N  LS+   DID+FK++ND +GH  GD
Sbjct: 415 MRQLAFTDPLTGLSNRRAGTVETGAYLSRFKQDNLALSVAILDIDFFKRVNDTYGHSRGD 474

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+   +  L         + R GGEEF     G+    A  +   L   I +       
Sbjct: 475 EVLISFARLLKATVRPSDRLYRWGGEEFLVLFPGADIAAATQVCERLCHTIASKHFEGVG 534

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                IT S G+ E    + + +++ RAD ALY AK+ GRNRV
Sbjct: 535 ----RITSSLGVTEASLDDSLDSLVSRADVALYQAKQQGRNRV 573


>gi|28871952|ref|NP_794571.1| response regulator [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28855205|gb|AAO58266.1| response regulator [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 551

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 10/157 (6%)

Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +      S  S  E   + F   DID+FK++ND+ GHP+GD+VI  L+
Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRREGKPLCFAMLDIDHFKRVNDSHGHPMGDRVIKSLA 438

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L        F+GR GGEEFA     +    A  + +++R     ++I+  + P+ +  
Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIHNAHKVLDEIRHRF--AEIHYPAQPADLFC 496

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T SAG+      +   ++  +AD ALY AK +GRN+V
Sbjct: 497 TFSAGVVCLGADDDSLSLASQADNALYRAKHAGRNQV 533


>gi|26247049|ref|NP_753089.1| hypothetical protein c1164 [Escherichia coli CFT073]
 gi|26107449|gb|AAN79632.1|AE016758_236 Hypothetical protein ycdT [Escherichia coli CFT073]
          Length = 496

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 21/164 (12%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI      
Sbjct: 326 DSLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVI----KT 381

Query: 162 LVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISS 212
           +V + G  +       R+GGEEF         + A  LA  +R+ +E     N +  I  
Sbjct: 382 VVSIIGKSIRPDDLFARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQ 441

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              + I+I A + ++    P   I   AD ALY AK++GRN+VV
Sbjct: 442 --KVTISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 482


>gi|27381815|ref|NP_773344.1| hypothetical protein bll6704 [Bradyrhizobium japonicum USDA 110]
 gi|27354984|dbj|BAC51969.1| bll6704 [Bradyrhizobium japonicum USDA 110]
          Length = 614

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 20/175 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
           +++S L+  D L+ L N   F   L +  ++       LS++  D+D+FK+ ND +GH  
Sbjct: 430 DKLSALASSDGLTALANRRHFDERLEAEWDRAKREGTPLSLLLMDVDHFKRFNDQYGHQA 489

Query: 151 GDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFA----AAALGSSEQEAAILANDLRKIIEN 205
           GD  +  ++  L      P  V  R GGEEFA       +G  EQ    +   +R+ I++
Sbjct: 490 GDACLRSVAGVLAEQARRPADVAARYGGEEFALLLPNTDMGGCEQ----VGERIRQAIQD 545

Query: 206 SQI-NISSGPSIHITISAGIAER---CHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I +  + PS  +T+S G A       K   +++I  AD+ALY AK+SGRNR+V
Sbjct: 546 LGILHALNPPSKQVTLSIGGATHMSFADKADCTSLIVAADKALYAAKESGRNRLV 600


>gi|323493946|ref|ZP_08099063.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
 gi|323311887|gb|EGA65034.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
          Length = 515

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 13/176 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-----SIVFFDIDYFKQIN 143
           ++ EL  S  ++ Q S ID L+G+ N      S   Y E L     S+V  DID+FK  N
Sbjct: 329 LIAELEDSRAQLKQQSTIDPLTGIANRRYLYDSAKEYIETLRYRYISVVIVDIDHFKLYN 388

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSS----EQEAAILAND 198
           D++GH  GDK +  ++  L          V R GGEEF       S    E   + L   
Sbjct: 389 DSYGHIAGDKALNQIAQTLKQAPTQYEHLVARYGGEEFCIVLACDSPIEIEPYVSSLVTS 448

Query: 199 LRKI-IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           ++++ IENSQ   +   +I +  ++G  ER H+  +S +I  AD+ALY  K +GRN
Sbjct: 449 VQQLNIENSQSPTAECVTISVGATSGQIERYHQ--LSALIQFADRALYQVKDTGRN 502


>gi|304312348|ref|YP_003811946.1| hypothetical protein HDN1F_27200 [gamma proteobacterium HdN1]
 gi|301798081|emb|CBL46303.1| Hypothetical protein HDN1F_27200 [gamma proteobacterium HdN1]
          Length = 613

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 16/172 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           R++ ++  D L+G+ N   F   L +        N  LS++  DIDYFK+ ND +GH  G
Sbjct: 424 RLALVATTDGLTGIANRRRFDEVLATELVRLRRSNVPLSLMLLDIDYFKRFNDEYGHVAG 483

Query: 152 D----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           D    ++ A L+  +     T   V R GGEEFAA    ++E+ AA LA   R  IE+  
Sbjct: 484 DDCLRRIGALLASSISRASDT---VARYGGEEFAAILPFTNERGAAALAECFRSGIESLG 540

Query: 208 I-NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I +  S  S  +T+S G+         ++ ++  AD  LY AK+ GRNRVV 
Sbjct: 541 IPHTGSTVSAFVTVSIGVVTLSAGMGSVAGVVELADAQLYQAKRMGRNRVVA 592


>gi|238924726|ref|YP_002938242.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Eubacterium rectale ATCC 33656]
 gi|238876401|gb|ACR76108.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Eubacterium rectale ATCC 33656]
          Length = 860

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 10/170 (5%)

Query: 99  RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI   +  D L+GL N        + FI      + + ++++ D+D FK IND  GH  G
Sbjct: 430 RIENQANNDFLTGLYNRMRCEQDLAKFIDDSVKNDTRGAMIYIDLDDFKHINDGLGHQYG 489

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++  +S  L  V G      R+GG+EF     GSS      + ND+++I         
Sbjct: 490 DVLLKAISHSLTQVKGIENHCYRMGGDEFIVIVTGSSVDRLESIINDIQQIFVRPW--FL 547

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            G   + TISAG+A        +  +I RAD AL+ AKK G+NR+  +++
Sbjct: 548 KGEDYYCTISAGVAFFPTDARTVEDVIRRADIALFNAKKEGKNRIEFYNE 597


>gi|77460305|ref|YP_349812.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1]
 gi|77384308|gb|ABA75821.1| putative GGDEF domain sensory box protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 308

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 8/167 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y   +Q +  D L+G  N  A   +L         + + LS++  DID+FKQ+ND  GH 
Sbjct: 140 YRAATQSALRDPLTGAGNRIAMEQTLHREIEMSRRHLQPLSLLMLDIDHFKQVNDLHGHS 199

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  +         V R GGEEF      +    AA++   LR+  + +Q  
Sbjct: 200 AGDDVLKAVAASIKGQLRNVDMVFRYGGEEFLILLSNTGRDAAAMVGERLRQAAQ-AQDY 258

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            ++   I +T+S G +     E   +++ RAD ALYVAK+ GRNR+ 
Sbjct: 259 YANNQLIELTVSLGCSTLLPGESADSLLRRADSALYVAKREGRNRLT 305


>gi|89093798|ref|ZP_01166744.1| sensory box/GGDEF/GAF/EAL domain protein [Oceanospirillum sp.
           MED92]
 gi|89081928|gb|EAR61154.1| sensory box/GGDEF/GAF/EAL domain protein [Oceanospirillum sp.
           MED92]
          Length = 970

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 62/196 (31%), Positives = 100/196 (51%), Gaps = 16/196 (8%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIV 132
           LL Y+S  S +  L     ++ +++  D L+GL N       L         +   L++ 
Sbjct: 396 LLRYVSLFSDITALKKQQQQLEKIAHYDALTGLPNRVLLSDRLQQAILQAKRHKRLLAVA 455

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQ 190
           FFD+D FK++ND  GH +GDK++  L+++          + RLGG+EF      L SSE+
Sbjct: 456 FFDLDGFKEVNDTHGHSIGDKLLIELAERSKQALREGDSLARLGGDEFVVVLQDLHSSEE 515

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAK 248
              +L   L+ I +   +N +    I ++ S GI      + I    +I +ADQA+YVAK
Sbjct: 516 SLPVLERLLKAISKPIFMNHT---EICVSASIGITFYPQADEIDADQLIRQADQAMYVAK 572

Query: 249 KSGRNRVVCFSDIENN 264
           +SG+NR   F D E++
Sbjct: 573 QSGKNRYHIF-DTEHD 587


>gi|330501458|ref|YP_004378327.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas
           mendocina NK-01]
 gi|328915744|gb|AEB56575.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas mendocina
           NK-01]
          Length = 548

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 9/183 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSA----FISSLGSYNEK---LSIVFFDID 137
           +S   L+ + + + ++ + +  D L+GL N       F   L     +   L++   D+D
Sbjct: 367 VSEERLRTISVLHEQLREQALCDPLTGLYNRRYLDEFFDRELARAQRESLPLALALIDLD 426

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK++ND  GH VGD V+  ++  L+    +   V R+GGEEF     G   Q A +   
Sbjct: 427 HFKRLNDECGHLVGDDVLKAVAQHLLDNLRSTDAVFRIGGEEFLLILPGLDAQAAEVRLE 486

Query: 198 DLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            LR  + +       G ++ +T+SAGIA    + E +  ++  AD ALY AK+ GRNR+ 
Sbjct: 487 SLRLQLADMDQPTRIG-ALPVTLSAGIAVWPTNGEKLDELLQAADMALYSAKRGGRNRIA 545

Query: 257 CFS 259
             S
Sbjct: 546 LAS 548


>gi|323953280|gb|EGB49146.1| GGDEF domain-containing protein [Escherichia coli H252]
          Length = 455

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 21/164 (12%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI      
Sbjct: 285 DSLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIK----T 340

Query: 162 LVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISS 212
           +V + G  +       R+GGEEF         + A  LA  +R+ +E     N +  I  
Sbjct: 341 VVSIIGKSIRPDDLFARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQ 400

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              + I+I A + ++    P   I   AD ALY AK++GRN+VV
Sbjct: 401 --KVTISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 441


>gi|301023195|ref|ZP_07186996.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
 gi|300397173|gb|EFJ80711.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
          Length = 455

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 21/164 (12%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI      
Sbjct: 285 DSLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIK----T 340

Query: 162 LVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISS 212
           +V + G  +       R+GGEEF         + A  LA  +R+ +E     N +  I  
Sbjct: 341 VVSIIGKSIRPDDLFARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQ 400

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              + I+I A + ++    P   I   AD ALY AK++GRN+VV
Sbjct: 401 --KVTISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 441


>gi|152981991|ref|YP_001353685.1| hypothetical protein mma_1995 [Janthinobacterium sp. Marseille]
 gi|151282068|gb|ABR90478.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 876

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 59/172 (34%), Positives = 86/172 (50%), Gaps = 18/172 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144
           EL I Y  +      D L+ L N    +++L +  E        L+++F D+D+FK +ND
Sbjct: 436 ELQIEYQAMH-----DMLTDLPNRRFLVNTLNTAMETSRLRQSSLTMLFCDLDFFKSVND 490

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+ +  +S ++V    T  FV R GG EF      SS  EA I AN +   + 
Sbjct: 491 THGHDFGDQCLIEISKRIVTALPTADFVARFGGNEFVILT-NSSLAEATIKANTIMAAV- 548

Query: 205 NSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNR 254
            S+  I     + I  S GIA+    H+ P + +I  AD A+Y AK+ GRNR
Sbjct: 549 -SERLIFDNVVVKIQTSIGIAQLNAGHQSP-ADLIRDADAAMYQAKERGRNR 598


>gi|15077777|gb|AAK83338.1|AF372703_9 unknown [Pseudomonas syringae pv. syringae]
          Length = 534

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 112/259 (43%), Gaps = 33/259 (12%)

Query: 23  SPHTFMIYFSIFFSIFIATVIFIANIFLFYI--------GLTPFYGLEYILVENLSLVII 74
           SPH    Y       ++ ++  +A  + F +        GL   Y  ++   E    V+ 
Sbjct: 6   SPHMVRKYLYTLLWFYVLSIFLLAIAWEFELESLAMAAMGLP--YDQDFENAERWRFVLT 63

Query: 75  SITISLLLGYIS----GSILKELFISYNRI-------SQLSRIDCLSGLLN----HSAFI 119
           S   ++L   I       ++++L  SYN +         L+R D LSGLLN    H   +
Sbjct: 64  STGFAVLSMVIPFILLKRLMQQLHSSYNDLLESQALSESLARHDPLSGLLNRRVFHEQLV 123

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGE 178
           + L     + ++   D+D FK IND  GH  GD  I  +++ L     G    V RLGG+
Sbjct: 124 ARLQQPATQTAVFLIDLDKFKLINDTHGHAAGDAAICAVAESLRDATVGWQASVARLGGD 183

Query: 179 EFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAG--IAERCHKEPIST 235
           EF  A  G  S  E A LA ++   I    + +   P + ++ + G  IA     +P   
Sbjct: 184 EFGLAVSGDFSHAELAPLAENILAKIAAFSVGL---PRVALSATLGIAIAPMDGSDP-DL 239

Query: 236 IIYRADQALYVAKKSGRNR 254
           ++ RAD A+Y  K  GR R
Sbjct: 240 LLQRADSAMYRGKAGGRAR 258


>gi|320355079|ref|YP_004196418.1| response regulator receiver modulated diguanylate cyclase
           [Desulfobulbus propionicus DSM 2032]
 gi|320123581|gb|ADW19127.1| response regulator receiver modulated diguanylate cyclase
           [Desulfobulbus propionicus DSM 2032]
          Length = 326

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 10/179 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDN 145
           + L  S  R  +LS +D L+GL N      ++ ++      + L+++F DID FKQ+ D+
Sbjct: 138 QALKASRARYRELSFLDDLTGLFNTRYLYRNMQAHFNRDPEQSLTVIFMDIDRFKQVVDS 197

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  G + IA L+  +  +     +    GG+EF         +    LA  +R  I  
Sbjct: 198 HGHLNGSRAIAELAGIIKSLLPQGGYGVSYGGDEFVVVLANLDGEAGRRLAEQMRAAIAG 257

Query: 206 SQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            +     G S+H+T+S G+A   E  H   +  ++ +AD AL+ +K  GRN V+ F+D+
Sbjct: 258 RRFLRGQGLSVHLTVSCGMASYPEDAHD--LVDLLGKADHALFASKSRGRNTVISFADM 314


>gi|117623220|ref|YP_852133.1| diguanylate cyclase [Escherichia coli APEC O1]
 gi|218557913|ref|YP_002390826.1| diguanylate cyclase [Escherichia coli S88]
 gi|115512344|gb|ABJ00419.1| predicted diguanylate cyclase [Escherichia coli APEC O1]
 gi|218364682|emb|CAR02372.1| putative diguanylate cyclase [Escherichia coli S88]
 gi|222032786|emb|CAP75525.1| Inner membrane protein ycdT [Escherichia coli LF82]
 gi|294494001|gb|ADE92757.1| diguanylate cyclase domain protein [Escherichia coli IHE3034]
 gi|307627562|gb|ADN71866.1| putative diguanylate cyclase [Escherichia coli UM146]
 gi|312945594|gb|ADR26421.1| putative diguanylate cyclase [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315287342|gb|EFU46753.1| diguanylate cyclase domain protein [Escherichia coli MS 110-3]
 gi|324007869|gb|EGB77088.1| diguanylate cyclase domain protein [Escherichia coli MS 57-2]
          Length = 455

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 21/164 (12%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI      
Sbjct: 285 DSLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIK----T 340

Query: 162 LVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISS 212
           +V + G  +       R+GGEEF         + A  LA  +R+ +E     N +  I  
Sbjct: 341 VVSIIGKSIRPDDLFARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQ 400

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              + I+I A + ++    P   I   AD ALY AK++GRN+VV
Sbjct: 401 --KVTISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 441


>gi|87119011|ref|ZP_01074909.1| sensory box/GGDEF domain/EAL domain protein [Marinomonas sp.
           MED121]
 gi|86165402|gb|EAQ66669.1| sensory box/GGDEF domain/EAL domain protein [Marinomonas sp.
           MED121]
          Length = 816

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 112/230 (48%), Gaps = 29/230 (12%)

Query: 54  GLTPFYGLEYILVENLS---LVIISITISLLLGYIS----GSILKELFISYNRISQLSRI 106
            L   Y +E  L + ++   ++ IS T  +  G+ S     S + E      ++ Q++  
Sbjct: 312 NLEESYEVERELTDGMARKRVLQISYTAIVYEGHASLLLVASDMTEKITREKQLIQVAYQ 371

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F+  LG       S+ +  ++++ D+D F+ IND+ GH VGD +I  LS
Sbjct: 372 DQLTGLPNRELFLDRLGMAITYTASHKQYGALLYIDLDEFRLINDSKGHSVGDSIILALS 431

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISS------ 212
           D+L     +   + R+GG+EF     G  E +EAAI      KI+  +++ +S       
Sbjct: 432 DRLASKVNSSNTLARIGGDEFCIILSGVDEDKEAAI-----NKIVSTAELILSDIRQPLT 486

Query: 213 --GPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259
             G    +T S G+     ++  +  +++  D A+Y AK +GRNR+  F 
Sbjct: 487 IKGNEFRVTASIGVVIFSEEDSDAEELFKFGDTAMYNAKSAGRNRISMFK 536


>gi|94984673|ref|YP_604037.1| diguanylate cyclase [Deinococcus geothermalis DSM 11300]
 gi|94554954|gb|ABF44868.1| diguanylate cyclase [Deinococcus geothermalis DSM 11300]
          Length = 349

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 81/153 (52%), Gaps = 6/153 (3%)

Query: 106 IDCLSGLLNHSAFISSLGSYN--EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           +D L+ L N   F   L ++   E   ++  D+D FK +ND+ GHP GD+V+  L+  L 
Sbjct: 196 LDALTNLHNRRQFDEDLPAFGIEEGTFLLLLDLDRFKALNDSCGHPFGDRVLRELAVLLQ 255

Query: 164 V-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             V GT   V RLGGEEFA     +S   AA +A  LR  +          P + ITISA
Sbjct: 256 QGVRGTDR-VYRLGGEEFAVLLRQTSPTGAARVAERLRSQVREQLGTRVGRPDLTITISA 314

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G+   C  +P  T +  AD  LY AK+SGRNR+
Sbjct: 315 GLTP-CTADP-DTTVRTADHLLYEAKRSGRNRI 345


>gi|23007588|ref|ZP_00049393.1| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 359

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 80/180 (44%), Gaps = 16/180 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R++ LS  D L+ L N   F   L          +  L ++  D+D+FKQ+ND  GH  G
Sbjct: 163 RLTVLSETDSLTALPNRRHFSERLEEAWRLAAEQDAWLGVILVDLDHFKQLNDTAGHAEG 222

Query: 152 DKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D+ +  +++ L   V       GR GGEEFA    G+      +    LR  + +  I  
Sbjct: 223 DRCLIVVAEALQACVEARAGLAGRYGGEEFAVFLPGADPPAVRVAGEALRLAVSDLAICH 282

Query: 211 SSGP-------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
              P       S+ +T + G A  C  + +  ++  AD ALY AK  GR+RV  F    N
Sbjct: 283 PGRPSGARMTASVGVTAARGRARECGIQ-VPDLLKAADFALYAAKSDGRDRVEIFMPAAN 341


>gi|313681222|ref|YP_004058960.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313154082|gb|ADR32760.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 509

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 19/203 (9%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSLG 123
           L I S TI +LL  I   I ++L  +   +  L+  D L+GL N           ++ LG
Sbjct: 307 LTISSTTIFILL-IIVYRINRKLNQTSAELFDLATHDPLTGLFNRRGMMERLKFLLAELG 365

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF--- 180
              +  ++++ D+D FK +ND++GH +GD+++  +S ++ +       + R+GG+EF   
Sbjct: 366 RNKKNGALIYLDLDNFKPLNDSYGHAIGDELLIQVSKRIGMTVRAIDTIARMGGDEFLVI 425

Query: 181 -AAAALGSSEQEAAILANDLRKII-ENSQINISSGPSIHITISAGIA----ERCHKEPIS 234
            +        ++A  +A  LR ++ E   I+I+    I  +ISA I     +  HK    
Sbjct: 426 LSHMEPTKVYEDAKQIAEKLRTVLNEPFSISINEELEIKHSISASIGMVIFDEHHKA--D 483

Query: 235 TIIYRADQALYVAKKSGRNRVVC 257
           TII  AD A+Y AK+ GRNRVV 
Sbjct: 484 TIIIHADAAMYEAKEQGRNRVVV 506


>gi|297624605|ref|YP_003706039.1| diguanylate cyclase with GAF sensor [Truepera radiovictrix DSM
           17093]
 gi|297165785|gb|ADI15496.1| diguanylate cyclase with GAF sensor [Truepera radiovictrix DSM
           17093]
          Length = 701

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 78/167 (46%), Gaps = 8/167 (4%)

Query: 98  NRISQLSRIDCLSGLLN--HSAFISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPV 150
            R+ Q S  D L+GL N  H      L  +      E LS+V FD+D+FK+ ND +GH  
Sbjct: 516 ERLRQQSVRDPLTGLFNRRHLEEALELELHRAERRREPLSVVMFDVDHFKRFNDTYGHDA 575

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  +S  +           R GGEEF     G     A   A  LR  ++   +  
Sbjct: 576 GDAVLRSVSALVTRHIRAGDLPCRFGGEEFLLVQPGLGAPHAWERAESLRAAVQALALEH 635

Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +      ++IS G+A    H      ++  AD+ALY AK++GRNR V
Sbjct: 636 AGRALGRVSISVGVATYPDHAASAEALVRAADEALYRAKRAGRNRTV 682


>gi|257484751|ref|ZP_05638792.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330986383|gb|EGH84486.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011195|gb|EGH91251.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 523

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 88/178 (49%), Gaps = 18/178 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYN-EKLSIVFFDIDYFKQIND 144
           EL I+ N +  ++  D L+ L N   F ++L       S N   ++I+  DID+FKQ ND
Sbjct: 328 ELNIARNELEIIAHTDSLTHLANRRCFDAALQQEWGRASRNTATIAIILLDIDWFKQYND 387

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDL 199
            +GH +GD  +     Q+  + G  +        R GGEEF      +    A  +A  +
Sbjct: 388 TYGHLLGDDCL----KQVAGLIGNSLDRAGDIAARYGGEEFVILLPETDLAGALKIAEKI 443

Query: 200 RKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           R  +E ++I  S+ P   +TIS+G+       K+  +  +  AD+ LY+AK  GRNRV
Sbjct: 444 RSSVETNRIEHSASPLGKLTISSGVVSINAAEKDGHTAALAEADRLLYLAKTRGRNRV 501


>gi|301384376|ref|ZP_07232794.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas syringae pv. tomato Max13]
 gi|302061908|ref|ZP_07253449.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas syringae pv. tomato K40]
 gi|302132336|ref|ZP_07258326.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 712

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 18/187 (9%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEK----LSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++ S    NE+    L +
Sbjct: 254 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 310

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF      L   E
Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247
           Q A I    + ++    Q+N   G  I +  S GIA    C    +  ++  AD A+Y A
Sbjct: 371 QAAKIAEKLIERVSGRRQVN---GVDITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 426

Query: 248 KKSGRNR 254
           K++GR +
Sbjct: 427 KRAGRQQ 433


>gi|237801120|ref|ZP_04589581.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331023977|gb|EGI04034.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 719

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 88/170 (51%), Gaps = 18/170 (10%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I  L+  D L+GL N +  +  LG         N + +++F D+DYFK IND+ GHPVG
Sbjct: 275 QIHHLAYHDPLTGLPNRALLMDRLGQQLSLLKHQNLRGALLFLDLDYFKHINDSLGHPVG 334

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA------AALGSSEQEAAILANDLRKIIEN 205
           D V+  ++ +L         V RLGG+EF         +L    ++  +L+++LR ++  
Sbjct: 335 DSVLNVVAARLEASVRQEDTVARLGGDEFVVLICGLDGSLDEVTRKVRVLSDNLRVLL-- 392

Query: 206 SQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
           ++     G  + +T S GI         P + ++ RAD ALY AK +GRN
Sbjct: 393 AEPMFLDGHRLQVTPSIGIVLIPDDGLTP-ADVLKRADIALYRAKDAGRN 441


>gi|259907764|ref|YP_002648120.1| Putative exported protein, probable fragment [Erwinia pyrifoliae
           Ep1/96]
 gi|224963386|emb|CAX54873.1| Putative exported protein, probable fragment [Erwinia pyrifoliae
           Ep1/96]
 gi|283477624|emb|CAY73540.1| Protein yhjK [Erwinia pyrifoliae DSM 12163]
          Length = 375

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 91/178 (51%), Gaps = 8/178 (4%)

Query: 85  ISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDY 138
           I  ++L  + + +++I +L   ++ D ++GLLN     + L    S  +  +++  DID 
Sbjct: 182 IKRAMLAGIALLHDKIGRLRSEAQTDPMTGLLNRRGLDAVLDYFFSTKQPFAVLALDIDR 241

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND FGH  GD VI  ++ QL +       + R GGEEF     G+    A ++A  
Sbjct: 242 FKSVNDAFGHAAGDTVIKTVAHQLELGARQADVLCRNGGEEFLMLLPGADRDRALMVAER 301

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +RK IE  Q+ + +  ++ I+I          E +     +A +ALY AK +GRN VV
Sbjct: 302 VRKRIE--QLRMEAAGNVTISIGISFWSSDSGEDMHCAFGQAVEALYRAKNAGRNCVV 357


>gi|254500844|ref|ZP_05112995.1| MASE1 domain family [Labrenzia alexandrii DFL-11]
 gi|222436915|gb|EEE43594.1| MASE1 domain family [Labrenzia alexandrii DFL-11]
          Length = 497

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 91/184 (49%), Gaps = 29/184 (15%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----------IVFFDIDYFKQ 141
           EL  +  +  +L+  D L+G  N   F   L   NE+L+          ++ FD+D+FK+
Sbjct: 309 ELEEAKRKAEELASTDALTGAPNRRVF---LKRGNEELNRAIRGGEDACVIMFDLDHFKE 365

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFV------GRLGGEEFAAAALGSSEQEAAIL 195
           +ND +GH +GD++   L D   V  G   FV      GR+GGEEFA     ++      +
Sbjct: 366 MNDTYGHQIGDRI---LKDCAAVTMG---FVRNYDLFGRIGGEEFAVFLPNTTVSGGQNV 419

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           A  LR+      +   S   ++ T S GI+    K+  +S ++ RAD A+Y AK  GRN 
Sbjct: 420 AEKLRQAFLERSV---SSHKLNYTASFGISPVLEKDRALSMVLRRADLAMYRAKADGRNC 476

Query: 255 VVCF 258
           VV +
Sbjct: 477 VVVY 480


>gi|28872128|ref|NP_794747.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28855382|gb|AAO58442.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 719

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 18/187 (9%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEK----LSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++ S    NE+    L +
Sbjct: 261 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 317

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF      L   E
Sbjct: 318 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 377

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247
           Q A I    + ++    Q+N   G  I +  S GIA    C    +  ++  AD A+Y A
Sbjct: 378 QAAKIAEKLIERVSGRRQVN---GVDITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 433

Query: 248 KKSGRNR 254
           K++GR +
Sbjct: 434 KRAGRQQ 440


>gi|330873862|gb|EGH08011.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 712

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 18/187 (9%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEK----LSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++ S    NE+    L +
Sbjct: 254 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 310

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF      L   E
Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247
           Q A I    + ++    Q+N   G  I +  S GIA    C    +  ++  AD A+Y A
Sbjct: 371 QAAKIAEKLIERVSGRRQVN---GVDITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 426

Query: 248 KKSGRNR 254
           K++GR +
Sbjct: 427 KRAGRQQ 433


>gi|302867269|ref|YP_003835906.1| diguanylate cyclase [Micromonospora aurantiaca ATCC 27029]
 gi|315506325|ref|YP_004085212.1| diguanylate cyclase [Micromonospora sp. L5]
 gi|302570128|gb|ADL46330.1| diguanylate cyclase [Micromonospora aurantiaca ATCC 27029]
 gi|315412944|gb|ADU11061.1| diguanylate cyclase [Micromonospora sp. L5]
          Length = 260

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 78/155 (50%), Gaps = 10/155 (6%)

Query: 107 DCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GL N  AF     +       + L  V  D+D FKQ+ND +GH  GD+V+  ++ Q
Sbjct: 100 DPLTGLPNRRAFFRLAAALLTDPAGQPLVAVVLDLDNFKQVNDRYGHAAGDQVLVSVA-Q 158

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITI 220
            +  F  P  V RLGG+EF A  L S   +   + +  R++ E     I  G  SI +T 
Sbjct: 159 RLAAFAGPNLVARLGGDEF-AGLLASPTADRRWIEHATRRLCEALAAPIPLGARSIQVTA 217

Query: 221 SAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254
           S G+A   C  + ++  + RAD A+Y AK  G  R
Sbjct: 218 SVGLAPVHCPTQ-LTDALCRADAAMYEAKTLGAAR 251


>gi|229521488|ref|ZP_04410907.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
 gi|229341586|gb|EEO06589.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
          Length = 281

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%)

Query: 76  ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127
           + ISLLL YI    L+E      +   R ++L  +   D L+ + N   F   L    +E
Sbjct: 69  VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTHIYNRRFFSQHLCKMLDE 128

Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           K S  ++ FDID FKQIND++GH  GD  +  + D +           R GG+EFA  + 
Sbjct: 129 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 188

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
            + E         +RK++E   + +++   + +TIS G +  C + EP   I+   D  L
Sbjct: 189 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 246

Query: 245 YVAKKSGRNRV 255
           Y++K  GRNRV
Sbjct: 247 YLSKSKGRNRV 257


>gi|332139558|ref|YP_004425296.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549580|gb|AEA96298.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Alteromonas macleodii str. 'Deep ecotype']
          Length = 353

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 71/128 (55%), Gaps = 1/128 (0%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS V  DID+FK+IND++GH VGD+V+  ++  +     +   V R GGEEF      ++
Sbjct: 226 LSAVVVDIDHFKKINDSYGHDVGDQVLIHVTSLMKEAVRSSDVVARTGGEEFLVLFPHAT 285

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
             +A  LA  +R++IE     ++   +  IT S G+A       +   + +AD  LY AK
Sbjct: 286 LTQAVKLAETMRRLIEERPF-VAGDINHPITASFGVATALTDTNLHASLKQADDNLYKAK 344

Query: 249 KSGRNRVV 256
            +GRNRV+
Sbjct: 345 NAGRNRVM 352


>gi|117920926|ref|YP_870118.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117613258|gb|ABK48712.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 467

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 77/156 (49%), Gaps = 4/156 (2%)

Query: 107 DCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D LSGLLN   F+  L + N    + S+   D+D FK IND +G  VGD+VI  L+  + 
Sbjct: 312 DPLSGLLNRRGFMPQLTNLNGQTVRYSVAMLDLDNFKMINDTYGDSVGDRVIQLLAQLIH 371

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
               +     RLGGEEFA        ++   +   +RK      I  +   +I+ T+S G
Sbjct: 372 NHSRSQDIAARLGGEEFALVLRDIDAEQVYPVLERIRKSFAEMSIA-AEEHTIYCTVSIG 430

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             E        ++++ AD+ALY AK  G+N +V + 
Sbjct: 431 WVEYQQGIAGESLLHLADKALYQAKAKGKNTIVKYQ 466


>gi|323492416|ref|ZP_08097564.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
 gi|323313203|gb|EGA66319.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
          Length = 319

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 15/180 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDIDYFK 140
           L +++ +Y  I   S  D L+GLLN       L    E +          +   D+D+FK
Sbjct: 128 LAKIYRNYLIILHESERDKLTGLLNRKTLEERLSYCFEVVHRPQDEINAWVAIIDLDHFK 187

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH +GD+V+   + Q+   F     + R GGEEF        +Q      +  R
Sbjct: 188 AINDTYGHMIGDEVLLLFAQQMQNFFTDQEQLFRFGGEEFVVLLPQQDKQACYNRLDSFR 247

Query: 201 KIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + IE+ +      P + ++T S G+      E + TI+  AD ALY AK++GRN++ C+ 
Sbjct: 248 RHIESFRF-----PQVANLTFSCGVCGITRNEYLPTILDHADSALYNAKENGRNQICCYE 302


>gi|254491592|ref|ZP_05104771.1| hypothetical protein MDMS009_1927 [Methylophaga thiooxidans DMS010]
 gi|224463070|gb|EEF79340.1| hypothetical protein MDMS009_1927 [Methylophaga thiooxydans DMS010]
          Length = 805

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 9/171 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           N++S  +  D L+GL+N + F       +     ++   ++ F D+D FK IND  GH  
Sbjct: 359 NKLSYQATHDNLTGLINRTEFERRLIELVQDARQHDSVHALCFIDLDQFKVINDTCGHIA 418

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+++  L  +L+        + RLGG+EFA         ++  +A ++R++IE  Q  +
Sbjct: 419 GDELLRQLGQRLIGQVRKSDTLARLGGDEFAILMRHCDPGQSEKVATEVREVIELFQF-V 477

Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                  I  S G++    H   ++ ++ +AD A Y AK +GRNRV  + D
Sbjct: 478 WDSRVFTIGASIGVSSIHRHTTDMTEVLKQADTACYAAKNAGRNRVYIYQD 528


>gi|182414373|ref|YP_001819439.1| response regulator receiver modulated diguanylate cyclase [Opitutus
           terrae PB90-1]
 gi|177841587|gb|ACB75839.1| response regulator receiver modulated diguanylate cyclase [Opitutus
           terrae PB90-1]
          Length = 300

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 85/164 (51%), Gaps = 8/164 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           + QL+  D L+GLLN   F   L    ++       + +V  DID+FK IND  GHP GD
Sbjct: 131 MRQLATHDQLTGLLNRREFDRELAEERDRARRFEHPIGLVMVDIDHFKAINDTHGHPAGD 190

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++ ++     +   + R GGEEFA   + S    A   A  +   +  + I + +
Sbjct: 191 TVLREVARRMSAEARSVDRLARFGGEEFALIVVESDRAAALEAAQRMWAAVRRTPIALGN 250

Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
           G  + +T+SAG A   H  +   T+I  AD+ALY AK +GR+RV
Sbjct: 251 GVQLVVTVSAGAAALPHDADSEETLIAAADRALYAAKAAGRDRV 294


>gi|170757365|ref|YP_001782986.1| putative diguanylate cyclase [Clostridium botulinum B1 str. Okra]
 gi|169122577|gb|ACA46413.1| putative diguanylate cyclase [Clostridium botulinum B1 str. Okra]
          Length = 437

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 93/173 (53%), Gaps = 12/173 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQIND 144
           E + + N+I +LS I  L+  LN  +F+  L         N++ +SIVF D+DYFK+ ND
Sbjct: 256 ENYSANNKIKKLS-ICSLTYALNRGSFMEKLKDEFDDSKKNKRHISIVFIDVDYFKEYND 314

Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           N+GH  GDKV+  +   ++ V       VGR GG+EF          E  ++A ++ K I
Sbjct: 315 NYGHIEGDKVLMKIGKSIINVAKKYSGVVGRYGGDEFIVLLNEVKTSELEVIAVEISKEI 374

Query: 204 ENSQINIS-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
              +I    S  S + T+S G+A    K  E I  +I  AD+ALY +K++GR+
Sbjct: 375 NKLKIKREYSHISKYQTVSIGVASIIPKEEEKIEDLINYADKALYKSKENGRD 427


>gi|153001535|ref|YP_001367216.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|151366153|gb|ABS09153.1| diguanylate cyclase [Shewanella baltica OS185]
          Length = 579

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 70/133 (52%), Gaps = 8/133 (6%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187
           L I+ FDID FKQ ND +GH  GD+ +  + +    +   P   + R GGEEF      S
Sbjct: 438 LGIILFDIDNFKQFNDRYGHVAGDQCLKNIVNAAKSILKRPTDMLARYGGEEFMIVLPSS 497

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIAERCHKEP----ISTIIYRADQ 242
             +E    A  LR+ I + +I     P   I TISAGI   C + P     +++I RAD+
Sbjct: 498 HLEEVYQFAERLREKIISLEIPHEDSPHAGILTISAGIT--CWQLPQQLDANSLINRADE 555

Query: 243 ALYVAKKSGRNRV 255
           ALY AK +GRNR 
Sbjct: 556 ALYHAKLTGRNRT 568


>gi|330972078|gb|EGH72144.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 505

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 90/181 (49%), Gaps = 23/181 (12%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQIND 144
           EL I+ N +  ++  D L+ L N   F ++L       S N+  ++I+  DID+FKQ ND
Sbjct: 309 ELNIARNDLEIIAHTDSLTHLANRRCFDTALQQEWGRASRNDATIAIILLDIDWFKQYND 368

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDL 199
            +GH  GD  +     Q+  + G  +        R GGEEF      +    A  LA  +
Sbjct: 369 TYGHLQGDDCLR----QVAGLIGNSLDRSGDMAARYGGEEFVILLPETDLAGALKLAEKI 424

Query: 200 RKIIENSQINISSGPSIHITISAGI-----AERCHKEPISTIIYRADQALYVAKKSGRNR 254
           R  IE S I  SS P   ++IS+G+     AE+  K+  +  +  AD+ LY+AK  GRNR
Sbjct: 425 RSSIEASCIEHSSSPLGRLSISSGVVAINAAEK--KDAHTAALKEADRLLYLAKTKGRNR 482

Query: 255 V 255
           V
Sbjct: 483 V 483


>gi|304411133|ref|ZP_07392749.1| diguanylate cyclase with extracellular sensor [Shewanella baltica
           OS183]
 gi|307301744|ref|ZP_07581502.1| diguanylate cyclase with extracellular sensor [Shewanella baltica
           BA175]
 gi|304350668|gb|EFM15070.1| diguanylate cyclase with extracellular sensor [Shewanella baltica
           OS183]
 gi|306913782|gb|EFN44203.1| diguanylate cyclase with extracellular sensor [Shewanella baltica
           BA175]
          Length = 484

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYF 139
           ++ ++L  S   +  LS  D L+ L N   F + L   NE+        + +V  DIDYF
Sbjct: 310 TLRQQLEASNAELEFLSNHDPLTKLYNRHYF-NRLFINNEQHDKSAKAGMCLVMIDIDYF 368

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND  GH VGD+++  +S  L         V R GGEEF      SS      L   +
Sbjct: 369 KEINDTLGHNVGDRILEQVSQVLQHCVRESDVVARWGGEEFVILCQQSSLPLVESLCMRI 428

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + I++ Q       ++ +T S G+A+    EP+     RAD+ALY AK  GRN++
Sbjct: 429 AERIKHYQFT----DNVQLTCSFGVAKLADNEPMMLCFERADRALYRAKAQGRNQM 480


>gi|300088231|ref|YP_003758753.1| diguanylate cyclase with PAS/PAC sensor [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527964|gb|ADJ26432.1| diguanylate cyclase with PAS/PAC sensor [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 300

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 73/131 (55%), Gaps = 2/131 (1%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAA 183
           Y+    ++ FDID FK +NDN+GH +GD+V+  ++  ++    +P     R GGEEF   
Sbjct: 167 YDWPFGVILFDIDNFKAVNDNYGHDIGDEVLKMVARTIMANIRSPQSLFFRWGGEEFVIV 226

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
               +  +   +A  +R ++  S +   +   + +T+SAG+      +   TII RAD+ 
Sbjct: 227 GTNVNGLQLYDIAERMRNLVSCSML-TQNDLELSVTVSAGVTVARPGDNSETIIRRADEL 285

Query: 244 LYVAKKSGRNR 254
           +Y++KK+G+NR
Sbjct: 286 MYLSKKTGKNR 296


>gi|229521762|ref|ZP_04411180.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
 gi|229341356|gb|EEO06360.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
          Length = 312

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 83/167 (49%), Gaps = 8/167 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFI--SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           IS     + S+ID L+ L N   F   S   +    L ++ FDID+FKQIND +GHP GD
Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPETLLGLIIFDIDHFKQINDTYGHPAGD 205

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L           R GGEEF              LA ++R  +E+  + +  
Sbjct: 206 YVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANVIGLAENIRCYVESHTL-MWQ 264

Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  I +T+SAG    A   H      +++ ADQAL +AK+ GRNRV+
Sbjct: 265 GQQIALTLSAGCTIGAMMSHN--WDNLLHTADQALLLAKRLGRNRVI 309


>gi|226309056|ref|YP_002769016.1| hypothetical protein RER_55690 [Rhodococcus erythropolis PR4]
 gi|226188173|dbj|BAH36277.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
           PR4]
          Length = 775

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 95/187 (50%), Gaps = 9/187 (4%)

Query: 80  LLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIV 132
           ++LG+   GS + E ++    I +L+  D L+GL N  AF  +L       + ++++ + 
Sbjct: 322 VILGWRGVGSDITERYVHEQEILRLAATDSLTGLPNRRAFGVALEEAINSRAPDKQVLVG 381

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D FK +ND  GHP+GD+++  ++ +L  V G+ M   R+GG+EF      SS  + 
Sbjct: 382 ILDLDNFKSVNDTLGHPIGDQLLLEVTKRLRKVVGSDM-CSRMGGDEFGLIVCTSSRDDP 440

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            ++ +   +++        +   +  TI    A     +    ++  AD ALY AK +GR
Sbjct: 441 GVIFDRYLEVLHEPFFVEGNRIEVRATIGYSSAPEDSTD-ADGLVMLADLALYEAKSTGR 499

Query: 253 NRVVCFS 259
           NRV  FS
Sbjct: 500 NRVGKFS 506


>gi|213967857|ref|ZP_03396003.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas syringae pv. tomato T1]
 gi|213927200|gb|EEB60749.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas syringae pv. tomato T1]
          Length = 719

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 18/187 (9%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEK----LSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++ S    NE+    L +
Sbjct: 261 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 317

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF      L   E
Sbjct: 318 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 377

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247
           Q A I    + ++    Q+N   G  I +  S GIA    C    +  ++  AD A+Y A
Sbjct: 378 QAAKIAEKLIERVSGRRQVN---GVDITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 433

Query: 248 KKSGRNR 254
           K++GR +
Sbjct: 434 KRAGRQQ 440


>gi|330957167|gb|EGH57427.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 690

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 8/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIV--FFDIDYFKQINDNFGHPVGDKV 154
           Q + +D L+ L N +A+   L         EK S++    D+D+FK+IND +GH  GDKV
Sbjct: 528 QKALVDTLTELPNRAAWGERLEHEMAQWQREKNSLLVCILDLDHFKRINDGYGHLAGDKV 587

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +++          F+ R GGEEF      +       L ++LR  +E    +   G 
Sbjct: 588 LKIVANVFKKRLRPGDFLARFGGEEFVMLLPATVPDVGLKLLDELRAAVELCPFHFK-GE 646

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + IT+S G+      E   T I RADQALY AK++GRNRV
Sbjct: 647 RVTITVSMGMTAFRLGERSDTAIKRADQALYKAKENGRNRV 687


>gi|329890340|ref|ZP_08268683.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328845641|gb|EGF95205.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 609

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 75/159 (47%), Gaps = 9/159 (5%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      +L             L +V  D+D+FK+ ND FGH  GD V+  ++
Sbjct: 444 DPLTGLFNRRYMEEALALEVARAARSGAPLCVVMCDVDHFKRFNDEFGHEAGDVVLQAVA 503

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +L   F     V R GGEEF   A G+  +  A     +R+ I    + +   P    T
Sbjct: 504 AELGHRFRDGDIVCRYGGEEFIVIAPGTKAETLAPRVETVRQAIAAIALRLGKQPLGSST 563

Query: 220 ISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +S G+AE  +        ++  AD ALY AKK GRNRVV
Sbjct: 564 MSFGVAEWSKGMNRDGDALVQAADAALYRAKKEGRNRVV 602


>gi|296272919|ref|YP_003655550.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
 gi|296097093|gb|ADG93043.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
          Length = 631

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 13/163 (7%)

Query: 101 SQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +LS  D L+ + N          +   +      LSI+  DID FK INDN+GH  GD+
Sbjct: 473 EKLSNTDALTKVYNRRFLEDFSKKYFEIIKREKTTLSILIVDIDDFKTINDNYGHEAGDE 532

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  L + +        F+ RLGG+EF      S+ + A I+A  L K I  ++ N    
Sbjct: 533 VLLKLVELMQNKIRENDFIVRLGGDEFLVLLPNSNIKGAKIVAEKLLKSICEAKNNYK-- 590

Query: 214 PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
                T+S G AE     + I+ +I RAD+ LY AKK+G+N++
Sbjct: 591 ---RFTVSIGSAEFNLEDKDINCLIRRADEELYKAKKAGKNQL 630


>gi|289678766|ref|ZP_06499656.1| GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 524

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 87/178 (48%), Gaps = 18/178 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQIND 144
           EL I+ N +  ++  D L+ L N   F ++L       S N+  ++I+  DID+FKQ ND
Sbjct: 328 ELNIARNDLEIIAHTDSLTHLANRRCFDTALQQEWGRASRNDATIAIILLDIDWFKQYND 387

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDL 199
            +GH  GD  +     Q+  + G  +        R GGEEF      +    A  LA  +
Sbjct: 388 TYGHLQGDDCLR----QVAGLIGNSLDRSGDMAARYGGEEFVILLPETDLAGALKLAEKI 443

Query: 200 RKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           R  IE S I  SS P   ++IS+G+       K+  +  +  AD+ LY+AK  GRNRV
Sbjct: 444 RSSIEASCIEHSSSPLGRLSISSGVVAVNAAEKDGNTAALEEADRLLYLAKTKGRNRV 501


>gi|226356808|ref|YP_002786548.1| diguanylate-cyclase [Deinococcus deserti VCD115]
 gi|226318798|gb|ACO46794.1| putative diguanylate-cyclase [Deinococcus deserti VCD115]
          Length = 605

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 8/164 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q S  D ++GL N      ++           + +S++  DID+FK+ ND FGH  GD
Sbjct: 432 LRQQSIRDPMTGLFNRRYLEETMERELHRATRDQQSVSVLAVDIDHFKKFNDTFGHEAGD 491

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+   +  +   F     + R GGEEF    + +  ++    AN  R+ I    +  + 
Sbjct: 492 AVLLAAAKTMQEYFRAEDIICRYGGEEFIIVLVNAPHEDILARANGFREKIAALTVKHNR 551

Query: 213 GPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
                +T+S G+A    H   +  +I +ADQALY+AK+ GRNRV
Sbjct: 552 QMLGQVTVSIGVATYAEHGTDVRVLINQADQALYLAKQEGRNRV 595


>gi|222099520|ref|YP_002534088.1| Respons regulator [Thermotoga neapolitana DSM 4359]
 gi|221571910|gb|ACM22722.1| Respons regulator [Thermotoga neapolitana DSM 4359]
          Length = 452

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 72/156 (46%), Gaps = 4/156 (2%)

Query: 104 SRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           S  D L+ LLN  A   F+       E +++   DID FK+IND FGHP+GD+V+  + +
Sbjct: 297 SETDSLTQLLNKRAIMKFLEEALRKREGVAVAMLDIDDFKKINDTFGHPIGDEVLKVVGE 356

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            L          GR GGEEF                N + + I N            +T+
Sbjct: 357 TLKRTVSNGK-AGRYGGEEFMIVFETGDRNLVESTMNGIMEKIRNFNWKSIFNVERKVTL 415

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S G+A        + ++  AD+ LY AK+SG+NR V
Sbjct: 416 SGGVAFSDENSSPAGLVEEADKKLYEAKRSGKNRFV 451


>gi|170738560|ref|YP_001767215.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46]
 gi|168192834|gb|ACA14781.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46]
          Length = 536

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 26/218 (11%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           F+   GLT  +   ++L+  L++V +++  SL L      +++E   +      ++R D 
Sbjct: 53  FMLESGLTDLF--TFMLLMGLTMVGVTVRKSLKLR----RVMRERDAAAAHAEAVARHDA 106

Query: 109 LSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+GL N    + ++       +      ++  DID FK +ND +GH  GD V+  ++D+L
Sbjct: 107 LTGLANRRLLLEAIDRLMRSSATAVSGAVLLIDIDRFKPVNDLYGHAAGDAVLCAVADRL 166

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILAND----LRKIIENSQINISSGPSIH 217
             +  +     RLGG+EFA   +G +  EA A LA      + + +E +Q  +  G ++ 
Sbjct: 167 RSLAPSQGLAARLGGDEFALLVIGETGSEALARLAEQVIAAIARPVEWAQAELKVGATVG 226

Query: 218 ITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRN 253
           IT+         +E +    I++ AD A+Y  KK GR 
Sbjct: 227 ITL-------ISREDVDAHGIMHAADLAMYQGKKEGRG 257


>gi|74317607|ref|YP_315347.1| diguanylate cyclase [Thiobacillus denitrificans ATCC 25259]
 gi|74057102|gb|AAZ97542.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 538

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 82/178 (46%), Gaps = 8/178 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           +K+L +   ++S L R D ++  LN            S    +N   SI   D+D FK +
Sbjct: 355 IKQLELELAQMSALVREDPMTHSLNRRGLDDEFAREASRAERFNTPFSIAVLDVDNFKAL 414

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD+ +  L             + R+GGEEF      +   EA  +   L++ 
Sbjct: 415 NDRRGHNTGDEALIHLVKVAKEELRLSDHIARIGGEEFLIILPNTPVAEAVQIVTRLQRS 474

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +   +  + +   + IT SAG+AER   E    +I RAD A+Y AK SG+NRV    D
Sbjct: 475 L-TKKYFLDNNERVLITFSAGVAERRAGETQEALIARADSAMYEAKHSGKNRVCVAPD 531


>gi|26988144|ref|NP_743569.1| GGDEF domain-containing protein [Pseudomonas putida KT2440]
 gi|24982876|gb|AAN67033.1|AE016332_3 GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 493

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 8/160 (5%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+ +D L+GL N  +F       +      +  L  +  D+D+FK +NDN GH  GD+V+
Sbjct: 328 LATLDSLTGLYNRRSFDLLAAQALREARRDSSPLVALLIDLDHFKALNDNHGHLAGDEVL 387

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              ++ L         + R GGEEF      +  ++A  +A  +R+  E    +  + P 
Sbjct: 388 RQFANVLQGSLRQSDILCRWGGEEFIVLLREAEGRQAIEVAEKIRRRTEQLTFSYDNQP- 446

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + +T S G++     + +  ++ RAD+ALY AK++GRNRV
Sbjct: 447 LRLTTSIGLSSLQPGDTLHALLTRADRALYRAKQAGRNRV 486


>gi|88812167|ref|ZP_01127419.1| GGDEF family protein [Nitrococcus mobilis Nb-231]
 gi|88790671|gb|EAR21786.1| GGDEF family protein [Nitrococcus mobilis Nb-231]
          Length = 300

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 95/198 (47%), Gaps = 24/198 (12%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVF 133
           +L +++GS ++  +  +  I +L+ ID L+ + N   F+  +         Y   L+++ 
Sbjct: 105 ILKFLTGSNIEASY--HEEIYRLTTIDGLTQVYNKYYFLKEMARVVGRSVRYERDLALIL 162

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DIDYFK IND++GH  GD V+  ++  +           R GGEEF A     S+  A 
Sbjct: 163 CDIDYFKLINDSYGHLAGDHVLKQVAQHIKRHTHPDDIFARYGGEEFVALLPERSKSTAV 222

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIA----------ERC----HKEPISTIIYR 239
           ++A  LRK +++       G SI +T+S G+A          ER     H      +I  
Sbjct: 223 VVAESLRKHVDSEPFEF-DGVSIPVTLSMGVADLREARRALGERGGISEHDSSCFALIKL 281

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD  LY AK+ GRN +V 
Sbjct: 282 ADDRLYWAKQIGRNTIVA 299


>gi|327538970|gb|EGF25608.1| diguanylate cyclase [Rhodopirellula baltica WH47]
          Length = 331

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 14/168 (8%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKL--SIVFFDIDYFKQINDNFGHP 149
           YN +++    D L+G LN    + ++      S   KL  +++  DID+FK +ND  GH 
Sbjct: 167 YNALTR----DALTGALNKRFLMEAIDRELSRSTRAKLELAVIMLDIDHFKSVNDTHGHL 222

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD V+     ++  +  T   + R GGEEF      +   +A  +A   R  I  +   
Sbjct: 223 VGDDVLRTFGKRIQALCRTDDLLARYGGEEFCLLLAATGHHDAMEIAERCRATIAGTPFQ 282

Query: 210 ISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRV 255
            S GP + IT S G++     +P  +  ++  ADQ LY AK +GRN+V
Sbjct: 283 TSIGP-LEITASFGVSVMDPDQPSTVKALLQDADQHLYDAKNAGRNQV 329


>gi|153954414|ref|YP_001395179.1| signal transduction protein [Clostridium kluyveri DSM 555]
 gi|219855004|ref|YP_002472126.1| hypothetical protein CKR_1661 [Clostridium kluyveri NBRC 12016]
 gi|146347295|gb|EDK33831.1| Predicted signal transduction protein containing GGDEF domain
           [Clostridium kluyveri DSM 555]
 gi|219568728|dbj|BAH06712.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 289

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 80/168 (47%), Gaps = 16/168 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  +SRID L+ L N           I  + +     S+   D+D+FK IND +GH  GD
Sbjct: 125 LDNMSRIDPLTKLSNRRDLRQKFECEIKKVSTRPTSFSLAIGDVDFFKNINDTYGHGCGD 184

Query: 153 KVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           +V+     ++  +F   +     + R GGEEF      +  + A  +  ++R II+N   
Sbjct: 185 EVLK----KIACIFKNNLRKEDVISRYGGEEFVIFLPETDLKYALSVIENIRSIIQNETF 240

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             + G   H+TIS G+    H       I RAD ALY AK  GRNRVV
Sbjct: 241 EYN-GEIFHMTISFGLVNFNHSISFIECIERADSALYEAKVRGRNRVV 287


>gi|94501570|ref|ZP_01308087.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Oceanobacter sp. RED65]
 gi|94426253|gb|EAT11244.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Oceanobacter sp. RED65]
          Length = 577

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 88  SILKELFISYNRISQ---LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           ++ KEL  +  +++Q    +  D L+GL N  A+             Y  +LS++  D+D
Sbjct: 379 TMEKELEEAKEQLNQSQLKAMTDSLTGLPNRGAYDVYAQQEYERYKRYGGELSLIVCDVD 438

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK IND +GH  GDKV+  +S Q+         + R GGEEF      + +++A  +A 
Sbjct: 439 KFKSINDTYGHQAGDKVLQLISRQVKKGTRETDLLARYGGEEFVVLLPETKQEDAVSVAE 498

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            + + +  S  +   G  + ITIS G+A          +   AD ALY AK++GRN+
Sbjct: 499 KIIEAVATSPFHF-RGKRVQITISCGVASFKKGYRPEQVFDAADAALYRAKENGRNQ 554


>gi|15641388|ref|NP_231020.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|9655871|gb|AAF94534.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
          Length = 521

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%)

Query: 76  ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127
           + ISLLL YI    L+E      +   R ++L  +   D L+ + N   F   L    +E
Sbjct: 325 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 384

Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           K S  ++ FDID FKQIND++GH  GD  +  + D +           R GG+EFA  + 
Sbjct: 385 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 444

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
            + E         +RK++E   + +++   + +TIS G +  C + EP   I+   D  L
Sbjct: 445 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 502

Query: 245 YVAKKSGRNRV 255
           Y++K  GRNRV
Sbjct: 503 YLSKSKGRNRV 513


>gi|13472106|ref|NP_103673.1| hypothetical protein mll2297 [Mesorhizobium loti MAFF303099]
 gi|14022851|dbj|BAB49459.1| mll2297 [Mesorhizobium loti MAFF303099]
          Length = 697

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 83/168 (49%), Gaps = 20/168 (11%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK- 153
           +LSR D L+GL N  A    L  Y         K + +  D+D+FK+ ND +GH  GD+ 
Sbjct: 262 RLSRTDPLTGLENRRAIDEKLRDYWSDWQKLGSKFAAILIDVDFFKKFNDCYGHQEGDRC 321

Query: 154 ---VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209
              V   LSD +    G+   +GR GGEEF   A    + + A LA  + + +EN  I  
Sbjct: 322 LIHVANALSDLIKNYNGS---IGRYGGEEFIVLARMDKKDQVAELAEAICRTVENLAITH 378

Query: 210 --ISSGPSIHITISAGIA-ERCHK-EPISTIIYRADQALYVAKKSGRN 253
                G SI +T S G A  R      +  II+ AD+ALY+AK  GRN
Sbjct: 379 ELRRDGISI-VTASVGAAFTRTQAGAKLEKIIHEADRALYLAKAGGRN 425


>gi|83954114|ref|ZP_00962834.1| diguanylate cyclase, putative/response regulator [Sulfitobacter sp.
           NAS-14.1]
 gi|83841151|gb|EAP80321.1| diguanylate cyclase, putative/response regulator [Sulfitobacter sp.
           NAS-14.1]
          Length = 471

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 26/172 (15%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N    +S +     +       L+++  DID+FK++ND FGH  GD V+   +
Sbjct: 296 DPLTGIYNRRHALSEVARLALRTRRKGIPLAVMLADIDHFKRVNDAFGHASGDAVLVETA 355

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHI 218
            +L           R+GGEEF     G +E EA  +A  + +    +   I +S   IH 
Sbjct: 356 RRLKSCLRPLDVAARIGGEEFLLILPGITEAEATRMAKRMCEAYRTTPFTIPASAQPIHA 415

Query: 219 TISAGIAERCHKEPIST---------------IIYRADQALYVAKKSGRNRV 255
           TIS G+   C  +P ++               +I RADQALY AK  GR+RV
Sbjct: 416 TISIGL---CTAQPETSDAFPAPLDASAIAAELIDRADQALYSAKHRGRDRV 464


>gi|116692517|ref|YP_838050.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
 gi|116650517|gb|ABK11157.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
          Length = 516

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 12/168 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           I  L+R D L+GL N     + L           +   ++++ D+D FK IND FGH  G
Sbjct: 338 IRHLARHDALTGLPNRHELHAELKRMLARRPRLPSPAFAVMYLDLDGFKSINDRFGHQAG 397

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++++L           R+GG+EF  A   ++ Q  +ILA  + + I ++   +S
Sbjct: 398 DEVLTQVAERLGKTLPPGELAARIGGDEFIVAIDDTTMQACSILAARIIRQI-SAPYALS 456

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            G ++ I IS GIA +  H  P   +I +AD ALY AK +G+  + CF
Sbjct: 457 IGETVCIGISIGIALDDGHGSP-DELIRQADSALYDAKSAGKG-IYCF 502


>gi|225686403|ref|YP_002734375.1| GGDEF domain-containing protein [Brucella melitensis ATCC 23457]
 gi|225642508|gb|ACO02421.1| GGDEF domain protein [Brucella melitensis ATCC 23457]
          Length = 237

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 113/229 (49%), Gaps = 23/229 (10%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY- 97
           IAT+I I+       G+    G++   V  L  +++   I++LLG    S L+EL  SY 
Sbjct: 18  IATIISIS----LSTGIRFALGVKSDTVTILVRLLLPFLIAMLLGVFWFSRLEELERSYR 73

Query: 98  ------NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFGH 148
                 N +++++ +D L+GLLN  +FI    + N+     +F   D+DY KQIND +GH
Sbjct: 74  TAVKRANELARVASVDPLTGLLNRRSFIQQFNAANKAGVRGWFLIVDVDYLKQINDQYGH 133

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILAN-DLRK--IIE 204
           P GD  I  ++  L     +   + R+GG+EF A    G+     ++L++  LR   ++ 
Sbjct: 134 PAGDDAIIAVAQALEDCLSSDSLIARIGGDEFCAFVPKGAINDVDSVLSDISLRADGLLR 193

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             + N+ S     +T+S G       +    ++  AD+ LY  KKS R 
Sbjct: 194 EKRPNVGS----SLTVSVGRISCKTGQIFEEVLSIADEQLY-RKKSQRQ 237


>gi|119898940|ref|YP_934153.1| GGDEF family protein [Azoarcus sp. BH72]
 gi|119671353|emb|CAL95266.1| GGDEF family protein [Azoarcus sp. BH72]
          Length = 569

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 80/163 (49%), Gaps = 14/163 (8%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFF-----DIDYFKQINDNFGHPVGDKV 154
           QL+R D L+GL N  A    L       K S+V +     DID FK+IND  GH VGD V
Sbjct: 396 QLARRDALTGLPNRLAANEQLTEEFLRMKRSLVPYAVLMADIDLFKRINDGHGHAVGDAV 455

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  +        FV R+GGEEF      +  + AA++A  +R  +E      ++ P
Sbjct: 456 LRHVAGVIRSSLRITDFVARVGGEEFLVLLPNTDIEAAAVVAEKIRVAVEG-----AAAP 510

Query: 215 SI-HITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV 255
            +  +T+S G+       P      R AD  LY AK+ GRNR+
Sbjct: 511 EVGQVTLSIGVGRAVSAHPSPDDAVRLADDGLYEAKRLGRNRI 553


>gi|118443736|ref|YP_877444.1| signal transduction protein [Clostridium novyi NT]
 gi|118134192|gb|ABK61236.1| signal transduction protein containing diguanilate
           cyclase/phosphodiesterase domain [Clostridium novyi NT]
          Length = 365

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 86/168 (51%), Gaps = 9/168 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           YN+I Q++  D L G+ N   F +           +++ +IV  DID FK++ND +GH V
Sbjct: 197 YNKIRQIAIRDPLIGIYNRKHFFNIVEEKIKKDKASKRFAIVMMDIDDFKKVNDKYGHQV 256

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQIN 209
           GD+V+      +V        V R GGEE        SS+++   + N +RK I  + I 
Sbjct: 257 GDEVLKETGKIIVDNLNKEDIVARYGGEEIIMYVSNFSSKEDVYNIVNGIRKKISENIIK 316

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
              G  + IT S GIA      + ++++I  AD  LY+AKK+ +N V+
Sbjct: 317 Y-EGMKVSITASFGIAYYMEDGKSLNSVISVADNRLYIAKKANKNVVI 363


>gi|313499909|gb|ADR61275.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas putida BIRD-1]
          Length = 1098

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 16/174 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I  L+  D L+ L N +         I+ L  +N + +++F D+D+FK IND+ GHPVG
Sbjct: 656 QIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVG 715

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG------SSEQEAAILANDLRKIIEN 205
           D V+  ++ +L         V RLGG+EF     G        E++   LA+ LR+++  
Sbjct: 716 DTVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSREHVEEKVRELADTLRELL-- 773

Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           ++     G  + +T S G+A    H    + ++ RAD ALY AK SGRN    F
Sbjct: 774 AEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKRADIALYRAKDSGRNTTQLF 827


>gi|295103047|emb|CBL00591.1| diguanylate cyclase (GGDEF) domain [Faecalibacterium prausnitzii
           SL3/3]
          Length = 372

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 111/235 (47%), Gaps = 29/235 (12%)

Query: 29  IYFSIFFSIFIATVIFIANI-----FLFYIGLTPFYGLEYIL---VENLSLVIISITISL 80
           +Y++    + +ATV   A        L Y  LT F G E ++   +  L +  + +T+  
Sbjct: 144 MYYAAMLYLMVATVRTAAAFQNRSRTLIY-PLTLFLGAETVIQLALPELHVTWLCVTLLS 202

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI-VFFDIDYF 139
           +L YI  S               +++D L+GLLN +++++          + V FD+D F
Sbjct: 203 VLYYIYCS------------EMWNQLDALTGLLNQNSYLNRTAEMRRSGGVLVVFDVDDF 250

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQIND +GH  GD  +A ++D +   +    +  R+GG+EF    L   E+  A  A  L
Sbjct: 251 KQINDRYGHLQGDVCLAEIADCIKKAYARCGYCYRIGGDEF--CVLLKDEESEARCAKTL 308

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + ++   +   +  P++ +  +A        E + T+  RAD+ALY AKK  + R
Sbjct: 309 QALLAERRKVFAILPTVSLGSAAF-----SGEDVVTVKARADRALYCAKKEQKAR 358


>gi|261253757|ref|ZP_05946330.1| pole remodelling regulatory diguanylate cyclase [Vibrio orientalis
           CIP 102891]
 gi|260937148|gb|EEX93137.1| pole remodelling regulatory diguanylate cyclase [Vibrio orientalis
           CIP 102891]
          Length = 404

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 7/156 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +L+  D L+GL N     +   S  E  +I   DIDYFK++ND +GH  GD  +  +++ 
Sbjct: 253 KLANQDALTGLWNRRFLFNQACSGCEHSNIAMLDIDYFKKVNDTYGHDGGDATLKMVANI 312

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L V F   + V R GGEEF   +    ++  + + N +R+ +E + I    G  I +TIS
Sbjct: 313 LKVYFPDDVVV-RFGGEEFCIQSCAPFDEFISRIEN-MRQRVEKTPIK-HDGQQIQVTIS 369

Query: 222 AGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
            G+   C+    ++  I  AD  LY AK +GRN+ +
Sbjct: 370 IGV---CNLNTDLNDQIKIADDHLYAAKAAGRNQTI 402


>gi|190573501|ref|YP_001971346.1| putative transmembrane GGDEF family signalling protein
           [Stenotrophomonas maltophilia K279a]
 gi|190011423|emb|CAQ45041.1| putative transmembrane GGDEF family signalling protein
           [Stenotrophomonas maltophilia K279a]
          Length = 512

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 85/183 (46%), Gaps = 20/183 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           E      R++  +  D L+G+LN     + L       G     LS+ F D+D FK+IND
Sbjct: 317 EFEARAKRLADQAHRDALTGVLNRRQLEAVLEQEFLRAGRQGWPLSVAFIDLDDFKKIND 376

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILANDL 199
             GH  GD+V+   + +L         V R GGEEF A    +SE  A      +LAN  
Sbjct: 377 AHGHLTGDEVLRAFAGKLQGQLRHSDTVARFGGEEFVALLPNTSETVALDVIRRVLAN-- 434

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVV 256
             I+      +  GP + +T SAG+A +   E    +  ++  AD  LY +K  GRNRV+
Sbjct: 435 --IVATPMAELEGGP-LFVTFSAGVATQGGYERFADVQDLLRAADDVLYRSKNLGRNRVI 491

Query: 257 CFS 259
             S
Sbjct: 492 ARS 494


>gi|183179590|ref|ZP_02957801.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|183013001|gb|EDT88301.1| GGDEF family protein [Vibrio cholerae MZO-3]
          Length = 443

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 86/172 (50%), Gaps = 34/172 (19%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+G +N       L             +S++F DIDYFKQ+ND +GH +GD +
Sbjct: 272 EMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDL 331

Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KII 203
           +             SD+LV          R GGEEF      ++ ++A  LA  LR KI 
Sbjct: 332 LREFALVISREIRESDKLV----------RWGGEEFVVFCAQTTLEQAIELAERLRAKIA 381

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++S I+  +     IT S GIA+    E I+  + RAD ALY AK+ GRNR+
Sbjct: 382 DHSWIHGGA-----ITCSLGIAQ-MGDERITETVSRADDALYRAKRLGRNRI 427


>gi|163761463|ref|ZP_02168536.1| diguanylate cyclase [Hoeflea phototrophica DFL-43]
 gi|162281307|gb|EDQ31605.1| diguanylate cyclase [Hoeflea phototrophica DFL-43]
          Length = 316

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 14/168 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +++ QLSR D L+G+ N     + L          ++ LS++  DID FK IND++GH  
Sbjct: 135 DQLDQLSRTDSLTGVSNRRELEAVLERLFKEADRSDQPLSLLMMDIDNFKLINDSYGHDA 194

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  L+  L  V      V RLGG+EF      +    A +LA+ +   +  S    
Sbjct: 195 GDQVLCALAKVLQSVCRETDVVARLGGDEFVCVLHDTDLSGAQVLADRIMAAVSKS---- 250

Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256
           +  P  + T+S GI+ R      S+  ++  AD+ALY AK  GR+R  
Sbjct: 251 ADAPCAY-TVSIGISGRTRLFSASSGDVLKFADKALYDAKAGGRDRTA 297


>gi|148548982|ref|YP_001269084.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida F1]
 gi|148513040|gb|ABQ79900.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida F1]
          Length = 1098

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 16/174 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I  L+  D L+ L N +         I+ L  +N + +++F D+D+FK IND+ GHPVG
Sbjct: 656 QIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVG 715

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG------SSEQEAAILANDLRKIIEN 205
           D V+  ++ +L         V RLGG+EF     G        E++   LA+ LR+++  
Sbjct: 716 DTVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSREHVEEKVRELADTLRELL-- 773

Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           ++     G  + +T S G+A    H    + ++ RAD ALY AK SGRN    F
Sbjct: 774 AEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKRADIALYRAKDSGRNTTQLF 827


>gi|26988709|ref|NP_744134.1| sensory box protein [Pseudomonas putida KT2440]
 gi|24983498|gb|AAN67598.1|AE016389_6 sensory box protein [Pseudomonas putida KT2440]
          Length = 1136

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 16/174 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I  L+  D L+ L N +         I+ L  +N + +++F D+D+FK IND+ GHPVG
Sbjct: 694 QIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVG 753

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG------SSEQEAAILANDLRKIIEN 205
           D V+  ++ +L         V RLGG+EF     G        E++   LA+ LR+++  
Sbjct: 754 DTVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSREHVEEKVRELADTLRELL-- 811

Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           ++     G  + +T S G+A    H    + ++ RAD ALY AK SGRN    F
Sbjct: 812 AEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKRADIALYRAKDSGRNTTQLF 865


>gi|238786644|ref|ZP_04630445.1| Diguanylate cyclase [Yersinia frederiksenii ATCC 33641]
 gi|238725012|gb|EEQ16651.1| Diguanylate cyclase [Yersinia frederiksenii ATCC 33641]
          Length = 404

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 87/173 (50%), Gaps = 15/173 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQIND 144
           K L    + ++  +  D L+GL N + F   L         NE  +++F D D FK+IND
Sbjct: 212 KHLTQENDSLAHRAAHDSLTGLANRAFFEGRLSRTLKDCKTNEHAAVLFLDGDRFKEIND 271

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKI 202
           N+GH  GD V+  ++D++  +      V RLGG+EFA   A +  ++    I  N    I
Sbjct: 272 NYGHAAGDVVLTTIADRIRALLRESDLVARLGGDEFAVLLAPIHDTDDVLTIADN----I 327

Query: 203 IEN--SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGR 252
           IE+    I +  G  I  ++S GIA    H +    ++ RAD+A+Y AKK  R
Sbjct: 328 IESMTQPIVLVDGIEITTSLSIGIAVYPDHAQTPEELLQRADEAMYQAKKGFR 380


>gi|152968250|ref|YP_001364034.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Kineococcus radiotolerans SRS30216]
 gi|151362767|gb|ABS05770.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Kineococcus radiotolerans SRS30216]
          Length = 708

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 30/171 (17%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F  +L           + ++++  D+D+FK +ND  GHP GD+++  L+
Sbjct: 288 DPLTGLPNRRYFTQALQHALARSARSGQPVALLLLDVDHFKHVNDAHGHPAGDRLLTTLA 347

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE----NSQINISSGPS 215
            +L         V RLGG+EF             +LA DL  + E      ++N+++G +
Sbjct: 348 QRLRSSLRPSDTVCRLGGDEF------------VVLAEDLHHLDEALLLAERVNVAAGGT 395

Query: 216 -------IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                  + +++S G++          ++  AD ALY AK+ GR+R   F 
Sbjct: 396 YLLDHGEVRVSVSIGVSTAVGPGDPDALLSTADHALYEAKRRGRDRAEVFQ 446


>gi|323493241|ref|ZP_08098370.1| diguanylate cyclase [Vibrio brasiliensis LMG 20546]
 gi|323312507|gb|EGA65642.1| diguanylate cyclase [Vibrio brasiliensis LMG 20546]
          Length = 344

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 84/161 (52%), Gaps = 7/161 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGDKV 154
           +R++ L+  D L+G  N  + I++    +++     +   DID FK IND++GH  GD+V
Sbjct: 176 DRLNSLAHQDALTGAQNRLSLITAFNQSSKQFEGFYLFTLDIDDFKAINDSYGHAAGDEV 235

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LANDLRKIIENSQINISS 212
           +  +  +L  V GT   + R+GGEEF          E  +  L   L+  + ++ I   S
Sbjct: 236 LRQVVLRLGRVVGTQ-HIYRMGGEEFVVVLTRQLVNENGLPELVGKLQDCVMDTPITFQS 294

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
              I +T SAG+ +   +E +   + +AD  LY+AKK+G+ 
Sbjct: 295 -TQIRVTFSAGLEKFTRQEGLDRTLSKADNGLYLAKKAGKK 334


>gi|289666115|ref|ZP_06487696.1| GGDEF family protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 944

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 87/172 (50%), Gaps = 10/172 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           +EL  +   +S  +  D L+GLLN +  +++L             L++V  D+D+FK +N
Sbjct: 763 RELEAARAELSLKATHDELTGLLNRAGILAALREMLLHAARSGRPLAVVLIDLDHFKLVN 822

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD V+A +  ++  +      +GR GGEE  A   G +      L    R I 
Sbjct: 823 DQHGHLAGDAVLAGVGRRMDTLVRGDDRIGRYGGEELLALLPGLNLDATHRLEALHRDIC 882

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  I+   G  +H+T S G+A     E +  ++ RAD ALY AK++GRNR+
Sbjct: 883 GDYPID---GSWLHVTCSIGVAWFQPGETLEQLLARADAALYSAKRNGRNRI 931


>gi|167032524|ref|YP_001667755.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida GB-1]
 gi|166859012|gb|ABY97419.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida GB-1]
          Length = 1098

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 16/174 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I  L+  D L+ L N +         I+ L  +N + +++F D+D+FK IND+ GHPVG
Sbjct: 656 QIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVG 715

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS------EQEAAILANDLRKIIEN 205
           D V+  ++ +L         V RLGG+EF     G        E++   LA+ LR+++  
Sbjct: 716 DTVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSRELVEEKVRELADTLRELL-- 773

Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           ++     G  + +T S G+A    H    + ++ RAD ALY AK SGRN    F
Sbjct: 774 AEPMSLDGQRLQVTPSIGVALIPDHGATPADLLKRADIALYRAKDSGRNTTQLF 827


>gi|170738234|ref|YP_001779494.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia cenocepacia
           MC0-3]
 gi|169820422|gb|ACA95004.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia cenocepacia
           MC0-3]
          Length = 516

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 12/168 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           I  L+R D L+GL N     + L           +   +I++ D+D FK IND FGH  G
Sbjct: 338 IRHLARHDSLTGLPNRHELHAELKRMLARRPRLPSPAFAIMYLDLDGFKSINDRFGHQAG 397

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++++L           R+GG+EF  A   ++ Q  +ILA  + + I ++   +S
Sbjct: 398 DEVLTQVAERLGKTLPPGELAARIGGDEFIVAIDDTTMQACSILAARIIRQI-SAPYALS 456

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            G ++ I IS GIA +  H  P   +I +AD ALY AK +G+  + CF
Sbjct: 457 IGETVCIGISIGIALDDGHGSP-DELIRQADSALYDAKSAGKG-IYCF 502


>gi|89094788|ref|ZP_01167722.1| GGDEF domain protein [Oceanospirillum sp. MED92]
 gi|89080953|gb|EAR60191.1| GGDEF domain protein [Oceanospirillum sp. MED92]
          Length = 365

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 110/242 (45%), Gaps = 37/242 (15%)

Query: 48  IFLFYIGLTPFYGLEYILVENL--SLVIISITISLLLGYISGSILKELFI-----SYNR- 99
           IFLF I      GL + L E L  +       I L+L +++ + L   +      SY R 
Sbjct: 135 IFLFGIS-----GLLFFLDETLLAATYDTDFKIRLILSFLTVTFLSSFYEYSREESYQRA 189

Query: 100 ------ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNF 146
                   QL+++D L+ L N    +         +    E ++++  DID+FK INDN+
Sbjct: 190 LEISQEFEQLAKVDPLTKLSNRRDALEKIEYEFHRMERTQEPVTVLLCDIDHFKAINDNY 249

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD V+  LS    +       V R GGEEF      +    A+I A  L + I   
Sbjct: 250 GHDAGDLVLVSLSRLFELQIRAQDTVSRWGGEEFLFVLPQTDLINASIFAEKLHRAI--- 306

Query: 207 QINIS--SGPSIHITISAGIAERCHKEPISTI---IYRADQALYVAKKSGRNRVVCFSDI 261
           ++N +   G  I  T S G+   C  +P ++I   + +AD+ALY AK +GRN  +   D 
Sbjct: 307 RLNTAFYQGQVIQCTTSIGM---CQLDPGTSIKESLRKADEALYQAKDAGRNTTMPQVDR 363

Query: 262 EN 263
            N
Sbjct: 364 TN 365


>gi|326391753|ref|ZP_08213275.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Thermoanaerobacter ethanolicus JW 200]
 gi|325992217|gb|EGD50687.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Thermoanaerobacter ethanolicus JW 200]
          Length = 676

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 79/164 (48%), Gaps = 12/164 (7%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+   N   F+  L    E++       S++ FD+D+FK++ND FGH  GD V+  ++
Sbjct: 515 DPLTNTYNRRFFMQMLEQEIERVKRNRRPFSLIMFDLDHFKKVNDRFGHAAGDMVLKSVA 574

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           D +           R GGEEF      +S   A  LA +LRK I   ++         +T
Sbjct: 575 DTVKERIRKTDCFARWGGEEFIILLPETSLNNAVDLAEELRKQISRMELQGIGD----VT 630

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV-CFSDIE 262
            S G+ E    + I T++ R D  LY AK +GRN V  C  DIE
Sbjct: 631 ASFGVTEYRDTDTIDTVLIRVDNMLYEAKGAGRNCVKSCKFDIE 674


>gi|229524675|ref|ZP_04414080.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|229338256|gb|EEO03273.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
          Length = 312

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 8/167 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFI--SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           IS     + S+ID L+ L N   F   S   +    L ++ FDID+FKQIND +GHP GD
Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPETLLGLIIFDIDHFKQINDTYGHPAGD 205

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L           R GGEEF              LA ++R  +E+  + +  
Sbjct: 206 YVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANVVGLAENIRGYVESHTL-MWQ 264

Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  I +T+SAG    A   H      +++ ADQAL  AK+ GRNRV+
Sbjct: 265 GQQIALTLSAGCTMGAMMSHN--WDNLLHTADQALLSAKRLGRNRVI 309


>gi|227884018|ref|ZP_04001823.1| diguanylate cyclase [Escherichia coli 83972]
 gi|301047387|ref|ZP_07194469.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1]
 gi|227838770|gb|EEJ49236.1| diguanylate cyclase [Escherichia coli 83972]
 gi|300300731|gb|EFJ57116.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1]
 gi|315291128|gb|EFU50491.1| diguanylate cyclase domain protein [Escherichia coli MS 153-1]
          Length = 455

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 21/164 (12%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI      
Sbjct: 285 DSLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIK----T 340

Query: 162 LVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISS 212
           +V + G  +       R+GGEEF         + A  LA  +R+ +E     N +  I  
Sbjct: 341 VVSIIGKSIRPDDLFARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQ 400

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              + I+I A + ++    P   I   AD ALY AK++GRN+VV
Sbjct: 401 --KVTISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 441


>gi|218515981|ref|ZP_03512821.1| putative sensory box/GGDEF family protein [Rhizobium etli 8C-3]
          Length = 240

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 95/177 (53%), Gaps = 14/177 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148
           S   +  ++  D L+G+LN    +       E+       ++++ FD+D+FK++ND FGH
Sbjct: 31  SERHLRTMTLTDSLTGVLNRRGLLGYFEPSQERAHGEQRQVAVILFDLDHFKRVNDRFGH 90

Query: 149 PVGDKV-IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
             GD V IAF       + G     GR+GGEEFAA A  + + EA  +A  +R   E  +
Sbjct: 91  QAGDAVLIAFARMARQYIPGN--IFGRMGGEEFAAFAAVADQMEAEAIAEAIR--TEFCR 146

Query: 208 INISSGPSI-HITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           + +++G +I  +T+S GIA     +  I  +I  AD+ALY AK +GRN  V F + E
Sbjct: 147 LPVATGEAIVPVTVSIGIALASSIDANIDKLISAADRALYAAKAAGRNCTVTFGETE 203


>gi|158424389|ref|YP_001525681.1| hypothetical protein AZC_2765 [Azorhizobium caulinodans ORS 571]
 gi|158331278|dbj|BAF88763.1| protein of unknown function [Azorhizobium caulinodans ORS 571]
          Length = 309

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 11/166 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+ ID L+ + N   F+       +     +  LS++  DID+FK +ND  GH +GD
Sbjct: 135 LRRLATIDPLTEIFNRRHFMEVARQAFAEAERSHAPLSLLTLDIDHFKIVNDTHGHGIGD 194

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +VI  ++ +          + R+GGEEFA    G++ QEA   A  L   + +  + +  
Sbjct: 195 EVIRAVARRCGQTLRPKDVLARMGGEEFAILMPGTTAQEACAQAWALFDGVTSEPLVLPE 254

Query: 213 GPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVV 256
              + ++IS G A+ C  +   +   + RAD+ALY AK+SGR RVV
Sbjct: 255 L-QLRVSISVGGAQ-CLPDDSSLDATLTRADRALYAAKRSGRGRVV 298


>gi|152990054|ref|YP_001355776.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
 gi|151421915|dbj|BAF69419.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
          Length = 627

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 7/163 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           +  + S +D L+ + N     + L S+  ++  I+  D+D+FK+IND +GH  GD ++  
Sbjct: 213 KTKKESFLDPLTQIYNRKFLRTFLTSFQPDRYQILMLDVDHFKKINDVYGHKAGDFILQE 272

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE--AAILANDLRKIIENSQINISSGPS 215
           +++ +        ++ R GGEEF       ++    A  +AN +RKIIE     I +   
Sbjct: 273 VANLMKKNIREEDYLIRYGGEEFLLFIHRENKNSNIAIDIANRIRKIIEIKDF-IYNNHH 331

Query: 216 IHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           I ITIS G+       K PI  I Y AD+ LY+AK+ GRN+V+
Sbjct: 332 IKITISVGVNLHPEHFKNPIEAIKY-ADEMLYIAKRQGRNQVI 373


>gi|95930642|ref|ZP_01313376.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95133294|gb|EAT14959.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 475

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 1/125 (0%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS+V  DID+FK++ND +GH VGD+V+  ++            V R GGEEF      ++
Sbjct: 344 LSVVMMDIDHFKKVNDTYGHHVGDQVLMEVAQTCRSHCRESDLVSRFGGEEFLILLPSTN 403

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
              A   A  +R+ IE+     + G ++ +T S G+++   +  I  ++ RAD ALY AK
Sbjct: 404 LNGAQTHAEKIRQAIEDLSFPTAEG-NVSVTASFGVSQWQGETKIDRVVSRADAALYQAK 462

Query: 249 KSGRN 253
             GRN
Sbjct: 463 HDGRN 467


>gi|300311572|ref|YP_003775664.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gi|300074357|gb|ADJ63756.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 395

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 16/183 (8%)

Query: 85  ISGSIL---KELFISYNRI----SQLSRIDCLSGLLNHSAFISS----LGSYNEK---LS 130
           +SGS+L     + I + R+     +L+  D L+G LN    +      L    E+   L+
Sbjct: 205 LSGSLLFSVSLMMIYFERLLADRQRLATEDQLTGALNRRELVRCGELLLARAVERKSVLA 264

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           + F D+D+FKQIND  GH  GD+V+A +   L         +GR GGEEF A   G    
Sbjct: 265 LAFIDVDHFKQINDRHGHLAGDRVLAGIGATLAQSCRPGDVLGRYGGEEFCAVFPGVDHD 324

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +A  +   L + +   +     G  + I++   + +  ++     +++ AD ALY AK  
Sbjct: 325 QACQIGQRLLESVRTQRFE--HGHPVTISVGLAVLQPGNQRSWDELVHEADLALYRAKNE 382

Query: 251 GRN 253
           GRN
Sbjct: 383 GRN 385


>gi|296135678|ref|YP_003642920.1| diguanylate cyclase [Thiomonas intermedia K12]
 gi|295795800|gb|ADG30590.1| diguanylate cyclase [Thiomonas intermedia K12]
          Length = 325

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 93/197 (47%), Gaps = 18/197 (9%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           I L L  + G    E+  +  R +Q    D L+GL   +A    L              S
Sbjct: 138 IDLGLDTLQGFADLEVVFAARRAAQ----DPLTGLPGRAALQQRLQGEQSLVLRQGRMCS 193

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +V  DID+FK IND  GH  GD+V+A  +  L         V R GGEEF     G++  
Sbjct: 194 VVMLDIDHFKSINDQHGHQAGDRVLAAFARLLRGALRPYDGVYRYGGEEFVLVLPGATVA 253

Query: 191 EAAILANDLRK-IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           +A  + + +R+ I+E   + I +G  +HI  SAG+A   ++  I+  +  AD ALY AK 
Sbjct: 254 QAVQIIDRMRQTIVERPLVQIQTG-GLHIRFSAGVAA-LNERAIAQTLRCADAALYHAKA 311

Query: 250 SGRNRVVCFSDIENNTC 266
            GR++V     +E   C
Sbjct: 312 EGRDQV----RLERGHC 324


>gi|118588839|ref|ZP_01546247.1| hypothetical protein SIAM614_19074 [Stappia aggregata IAM 12614]
 gi|118438825|gb|EAV45458.1| hypothetical protein SIAM614_19074 [Stappia aggregata IAM 12614]
          Length = 419

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 83/168 (49%), Gaps = 13/168 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHP 149
           Y+++ + S  D L+G L+ S +         K       LS++  DID+FKQ+ND  GH 
Sbjct: 249 YHKLLEASIRDHLTGALHRSQYDQKAPKILAKNIEEKRPLSLLVIDIDHFKQVNDRHGHQ 308

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQI 208
            GD+++  ++  L     T   + R+GGEEF         + A  LA  LRK IE  S+I
Sbjct: 309 AGDEILKTVARLLADNLRTDDHLYRVGGEEFVLLCEKLPVEGATTLAERLRKTIERFSKI 368

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV 255
            +       +T+S G+A           ++R AD  LY AKK GRNRV
Sbjct: 369 YLPE----KVTVSIGLASAPQDGVTMEALFRQADLRLYEAKKQGRNRV 412


>gi|111022717|ref|YP_705689.1| hypothetical protein RHA1_ro05753 [Rhodococcus jostii RHA1]
 gi|110822247|gb|ABG97531.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 614

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 95/192 (49%), Gaps = 18/192 (9%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIV 132
           I+ LL  +   I+ E  + Y+     +  D L+GL N  A    L      S    ++I+
Sbjct: 163 IAALLAQVQARIVVEEQLRYS-----ADHDSLTGLSNRRALYHHLDTRLAESEAGPVAIL 217

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQE 191
           F D+D  K +ND FGH  GD  I+ ++D+L     T   V RLGG+EF     GS   +E
Sbjct: 218 FLDLDRLKPLNDFFGHGAGDGFISTIADRLRSTSQTDDLVSRLGGDEFVLVLGGSVGLEE 277

Query: 192 AAILANDLRKIIENSQINISS---GPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           A + A  +R ++   ++ +       S+ I ++ GI     K   S+++ +ADQA+ VAK
Sbjct: 278 AEVRAQHIRDVV-TERVRLGREVVSRSVSIGVAVGIP---GKATTSSLLSQADQAVMVAK 333

Query: 249 KSGRNRVVCFSD 260
             G N +  F+D
Sbjct: 334 TKGGNAISVFTD 345


>gi|259419193|ref|ZP_05743110.1| diguanylate cyclase [Silicibacter sp. TrichCH4B]
 gi|259345415|gb|EEW57269.1| diguanylate cyclase [Silicibacter sp. TrichCH4B]
          Length = 313

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 80/157 (50%), Gaps = 15/157 (9%)

Query: 106 IDCLSGLLN--HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD----KVIAFLS 159
           +D L+G  N  H A +S       K +++ FD+DYFK +ND FGHP GD     V A + 
Sbjct: 166 LDPLTGCFNRRHLARVSETQDL-RKAALILFDLDYFKSVNDTFGHPTGDFVLRSVTALVR 224

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            QL    G   F  R+GGEEF    L   +     LA   R+ ++ S+I  +      +T
Sbjct: 225 QQLSD--GDLFF--RIGGEEFLVLRLNPEKGTTRALAEQCRQALDTSRILATR----RVT 276

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +   A+   +  +  ++ +AD AL  AK++GRNRVV
Sbjct: 277 ATFSCADFDGRAEMEPVLGQADVALLKAKRAGRNRVV 313


>gi|260551034|ref|ZP_05825239.1| response regulator [Acinetobacter sp. RUH2624]
 gi|260405982|gb|EEW99469.1| response regulator [Acinetobacter sp. RUH2624]
          Length = 473

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 9/158 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+  L    F+ S+    EK+       +    D+D+FK++ND++GH +GD+ +    
Sbjct: 312 DELTSSLTRRQFLQSVRLLQEKVQKEHKTSAFFMLDVDHFKKVNDSYGHLIGDRALQTCV 371

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +  +      +GR GGEEFA     ++++ A  LA  +R  I    I +     I + 
Sbjct: 372 TTIQNILHPHDLLGRFGGEEFAIFIPDTTKEAAFELAERIRIKISQQPIYVYGKLPIFVQ 431

Query: 220 ISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S GI+     +   I ++   AD ALY AK+ GRNRV
Sbjct: 432 VSIGISLYSPNYHRSIESLFKEADDALYQAKRQGRNRV 469


>gi|238783668|ref|ZP_04627688.1| hypothetical protein yberc0001_31860 [Yersinia bercovieri ATCC
           43970]
 gi|238715381|gb|EEQ07373.1| hypothetical protein yberc0001_31860 [Yersinia bercovieri ATCC
           43970]
          Length = 431

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 6/133 (4%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           Y    S++  D+D+FK IND  GH  GD+V+  L+  L  +      V R GGEEF    
Sbjct: 302 YGHCFSLILLDVDHFKSINDQLGHNKGDEVLILLARTLESIIRESDSVFRWGGEEFTILL 361

Query: 185 LGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
             +  + A  LA  +R+ I+   Q N+       +T+S G+A+    E   ++  R D+A
Sbjct: 362 PLTHLEGALQLAESIRETIQMICQPNLP-----QLTVSIGVAQHQSGEDTDSLFKRMDEA 416

Query: 244 LYVAKKSGRNRVV 256
           LY AK SGRNRV+
Sbjct: 417 LYRAKASGRNRVL 429


>gi|242278703|ref|YP_002990832.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens
           DSM 2638]
 gi|242121597|gb|ACS79293.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens
           DSM 2638]
          Length = 383

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 7/172 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           ++L  S  R   LS  D L+GL N    +           +    LSI+  D+D FK  N
Sbjct: 207 QKLKESEERFKNLSITDQLTGLFNRRHMLDVAEKEIFKSRNTGHPLSIMLMDVDDFKMFN 266

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD ++  +   +           R GGEEF      ++  EA  +A ++R  +
Sbjct: 267 DTYGHAAGDDILEAIGKIIKNNIRATDKAFRYGGEEFMVILPETNGLEAIKVAENIRIAL 326

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              + +   G  IH TIS G+AE  + E +  +I RAD  +Y  K  G+NRV
Sbjct: 327 AEYEYHPKEGSPIHKTISIGVAEFTNDESLEKVIKRADDNMYRCKIKGKNRV 378


>gi|190894935|ref|YP_001985228.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190700596|gb|ACE94678.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 628

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 82/178 (46%), Gaps = 15/178 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L +S  ++  L+  D L+G++N  AF        +     N   S++  DID FK  ND 
Sbjct: 440 LRLSAEQLKNLAETDGLTGIVNRRAFDEVFARETAGNARRNTPFSLLMVDIDRFKAYNDT 499

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GHP GD+ +  +S  L      P   V R GGEEF      +S + A I+A    + + 
Sbjct: 500 YGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFVVFLPDTSAKGAMIVAEQFARRLA 559

Query: 205 NSQINISSGPSIHITISAGIAERCH-----KEPISTIIYRADQALYVAKKSGRNRVVC 257
              I  S      +T S GI+  C      +   + ++  AD ALY AK  GRNR++ 
Sbjct: 560 QENIVHSGSEFGRVTASIGIS--CATGAMLRASPNRLLAEADTALYEAKTQGRNRILA 615


>gi|310641381|ref|YP_003946139.1| diguanylate cyclase [Paenibacillus polymyxa SC2]
 gi|309246331|gb|ADO55898.1| Diguanylate cyclase [Paenibacillus polymyxa SC2]
          Length = 393

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 13/168 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKV 154
            RI + S  D L+GL N   F   L  Y +   ++S++F DID FK++ND  GH   D+V
Sbjct: 226 QRIYRSSITDGLTGLYNRKYFSGRLRRYMDQGIRVSVIFCDIDNFKKLNDTQGHARADEV 285

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  +          GR GGEE  A  +    + A +      ++ E S + IS G 
Sbjct: 286 LKQVAQIMEEELDEIGLTGRYGGEELVAMVVDRRAKVAQVAERIRERVAEESIVTISVG- 344

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             H T    I       P   ++ +ADQA+Y++K +G+N+V  +   E
Sbjct: 345 --HSTAKKEI------NP-DELVKQADQAMYISKTTGKNKVTAYKAAE 383


>gi|319761584|ref|YP_004125521.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|330823452|ref|YP_004386755.1| PAS/PAC sensor-containing diguanylate cyclase [Alicycliphilus
           denitrificans K601]
 gi|317116145|gb|ADU98633.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|329308824|gb|AEB83239.1| diguanylate cyclase with PAS/PAC sensor [Alicycliphilus
           denitrificans K601]
          Length = 431

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 25/180 (13%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL      + + +  D L+GL N  +F    G        +   LS++  DID+FK+ 
Sbjct: 253 ITELHELKEELRRQASTDGLTGLANRRSFCERAGHEFARSRRHGTPLSLIAIDIDHFKRF 312

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND++GHP+GD+V+   +     +        R GGEEF      +         +D R+I
Sbjct: 313 NDSYGHPLGDRVLCAFAACCQSMLREADLCARTGGEEFCILLPDTG-------LDDARRI 365

Query: 203 IENSQINISSG--------PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
            E  +I +S+G        P + I+ S G+A      +   T+  RAD+ALY AK+ GR+
Sbjct: 366 AE--RIRVSAGSLCVDGQSPQLRISASFGVASLESGDQAFDTLFSRADRALYCAKQQGRD 423


>gi|317152325|ref|YP_004120373.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942576|gb|ADU61627.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
          Length = 478

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 80/161 (49%), Gaps = 16/161 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISS--LGSYNEKL-----SIVFFDIDYFKQINDNFGHPVG 151
           R+ ++++ D L+G  N  A      L +Y  +      S V  D+D FK IND  GH  G
Sbjct: 315 RLERMAKTDPLTGAANRRALEERFHLAAYKARRNATPCSAVIIDLDDFKAINDTLGHMEG 374

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D VI  ++D +         + R GG+EF    + S+ Q+A+I+   +R        ++ 
Sbjct: 375 DAVIKTVADTITRTLRPTDLLARWGGDEF-VILMESTAQDASIVTERIR-------AHMP 426

Query: 212 SGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
            GP    I+ S GIA+    + + ++ +RADQA+Y AK  G
Sbjct: 427 PGPLGRTISFSCGIAQFTADDDLKSLTHRADQAMYAAKAKG 467


>gi|213968212|ref|ZP_03396357.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
 gi|301383782|ref|ZP_07232200.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato Max13]
 gi|302060775|ref|ZP_07252316.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato K40]
 gi|302131874|ref|ZP_07257864.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213927192|gb|EEB60742.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
          Length = 730

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 105/209 (50%), Gaps = 21/209 (10%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH---- 115
           G   +L  ++  + ++ T  LL+   +   + +L  +  +I  L+  D L+GL N     
Sbjct: 246 GAPLVLDVSVEFITLNNTACLLM---NARDIGQLKSAQAQIQHLAYHDPLTGLPNRALLM 302

Query: 116 ---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
              S  +S L   N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         V
Sbjct: 303 DRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSVIAARLEASVRQEDTV 362

Query: 173 GRLGGEEFAA------AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA- 225
            RLGG+EF         +L     +  +LA++LR ++  ++     G  + +T S GI  
Sbjct: 363 ARLGGDEFVVLICGLDGSLEHVTHQVRVLADNLRVLL--AEPMFLDGHRLQVTPSVGIVL 420

Query: 226 -ERCHKEPISTIIYRADQALYVAKKSGRN 253
                  P + ++ RAD ALY AK SGRN
Sbjct: 421 IPDDGLTP-ADLLKRADIALYRAKDSGRN 448


>gi|229915872|ref|YP_002884518.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
 gi|229467301|gb|ACQ69073.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
          Length = 496

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 14/163 (8%)

Query: 106 IDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+G  N        S FIS L    E  ++   DID+FKQ+ND FGH  GD V+  +
Sbjct: 220 VDELTGAFNRKYLKATFSRFISRLERSGESFAVALLDIDHFKQLNDTFGHSYGDDVLHRV 279

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH- 217
           S+++     +   + R GGEEF    L  S++  AI+ + L ++   ++I     P  H 
Sbjct: 280 SEEIRHAIRSSDELIRYGGEEF-LILLNVSDR--AIVESVLERV--RTRIEEMEFPYDHQ 334

Query: 218 ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           +T+S G    C     +      AD+ALY AK+ GRNRVV ++
Sbjct: 335 VTVSIGYTRVCQTGYTLGEWCAYADEALYKAKRDGRNRVVRYT 377


>gi|169796659|ref|YP_001714452.1| hypothetical protein ABAYE2642 [Acinetobacter baumannii AYE]
 gi|169149586|emb|CAM87475.1| hypothetical protein; putative GGDEF domain [Acinetobacter
           baumannii AYE]
          Length = 275

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 105/203 (51%), Gaps = 11/203 (5%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKE-LFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           IL  ++S ++IS   SL L      I ++ L I  + +  LS+ D L+ + N   F    
Sbjct: 62  ILGFSISSMLISRERSLFLNNQLAEINEQILRIEASELLHLSQQDALTQISNRRTFDEMF 121

Query: 123 GSY-----NEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
             +      EK  L+++F DID+FK  ND +GH +GDKVI+ ++  +        FV R 
Sbjct: 122 DFFYYRANQEKRPLAVLFIDIDFFKNYNDFYGHQMGDKVISSIAAAIKNSIRHVDFVARY 181

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAG--IAERCHKEP 232
           GGEEF      +  Q A  +A ++ K IE   I + +S  S ++TIS G  +     K  
Sbjct: 182 GGEEFVVLLPETPAQGAYSVAANIYKAIERQAIPHAASLVSKYVTISLGFTVYTGGLKMG 241

Query: 233 ISTIIYRADQALYVAKKSGRNRV 255
              +I+ ADQALY AK+ GRN++
Sbjct: 242 QDRLIHAADQALYRAKQLGRNQI 264


>gi|167644871|ref|YP_001682534.1| diguanylate cyclase [Caulobacter sp. K31]
 gi|167347301|gb|ABZ70036.1| diguanylate cyclase [Caulobacter sp. K31]
          Length = 239

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 13/191 (6%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS----- 124
           +L  + + I  L G ++      L    N    L+ +D L+ +LN  AF+  +       
Sbjct: 54  ALKTLMVEIDDLRGEVA-----RLKFKLNEAQGLADLDVLAPVLNRRAFLREIKRVAAFA 108

Query: 125 --YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
             Y    S+VFFD+D FK +ND FGH  GD+ +  ++ +L         VGR+GG+EFA 
Sbjct: 109 QRYGSPASLVFFDLDGFKAVNDRFGHAAGDEALKAVAQRLQAHVRESDVVGRIGGDEFAV 168

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
             + + +Q A   A  L + + +  + +    S+ + IS G+ E          +  AD 
Sbjct: 169 LLVQADQQTAVSKAETLAQAVRDMPVQVGEW-SVPLRISWGVREIEPGADPEVALAEADA 227

Query: 243 ALYVAKKSGRN 253
           A+++ K++ + 
Sbjct: 228 AMFLKKRARKE 238


>gi|218531235|ref|YP_002422051.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
 gi|254562231|ref|YP_003069326.1| diguanylate cyclase [Methylobacterium extorquens DM4]
 gi|218523538|gb|ACK84123.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
 gi|254269509|emb|CAX25475.1| putative diguanylate cyclase (GGDEF motif) [Methylobacterium
           extorquens DM4]
          Length = 352

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 18/185 (9%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDI 136
           +S + + +L        + +  D L+GL N   F          +        S++  DI
Sbjct: 163 VSAAHIAKLHKDLVETQRAAATDALTGLANRKTFDGFLRDSIARTRSDSGSTFSLLMLDI 222

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA----AAALGSSEQEA 192
           D+FK +ND  GH  GD+V+  +   L           R GGEEFA     A +G+    A
Sbjct: 223 DHFKGLNDRHGHRFGDQVLRLVGRLLSAKTTDRDLAARYGGEEFAIVLGEAGIGAGVALA 282

Query: 193 AILANDLR--KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
             +   LR  ++++    ++ +     +TISAG+A+    E    +I RAD+ALY AK++
Sbjct: 283 QEICGRLRGQRLVKRGTGDVVA----QVTISAGVAQYRPGEAARDVIERADRALYEAKRT 338

Query: 251 GRNRV 255
           GR+RV
Sbjct: 339 GRDRV 343


>gi|56416693|ref|YP_153767.1| response regulator PleD [Anaplasma marginale str. St. Maries]
 gi|222475058|ref|YP_002563473.1| Putative two-component response regulator with GGDEF and receiver
           domains [Anaplasma marginale str. Florida]
 gi|255003037|ref|ZP_05278001.1| response regulator PleD [Anaplasma marginale str. Puerto Rico]
 gi|255004160|ref|ZP_05278961.1| response regulator PleD [Anaplasma marginale str. Virginia]
 gi|56387925|gb|AAV86512.1| hypothetical protein AM475 [Anaplasma marginale str. St. Maries]
 gi|222419194|gb|ACM49217.1| Putative two-component response regulator with GGDEF and receiver
           domains [Anaplasma marginale str. Florida]
          Length = 455

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 9/162 (5%)

Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +++S  D L+G  N   F       ++      + LS++  D+D+FK++ND FGH VGD+
Sbjct: 291 AEMSITDPLTGCYNRRYFDMHFQNIVNEARDKGKDLSVMIIDVDHFKRVNDTFGHTVGDE 350

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  L  ++         + R GGEEF      +   +A   A  LR+ I     N S G
Sbjct: 351 LLQQLRKRIFDNIRISDLLARFGGEEFVIILPETGIDQAVTAAERLRQKIAEEPFNTSGG 410

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++  T+S G+AE    E     + RAD+ LY AK++ RN V
Sbjct: 411 -ALEKTVSIGVAEFRPSEEAKDFLNRADKCLYSAKET-RNAV 450


>gi|83311044|ref|YP_421308.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945885|dbj|BAE50749.1| Response regulator [Magnetospirillum magneticum AMB-1]
          Length = 317

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 79/164 (48%), Gaps = 13/164 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + + S  D L+GL N      S          Y E +S++  D+D+FK +ND  GH VGD
Sbjct: 157 LEKASITDALTGLFNRRRLDESFAHELDRAQRYAEPVSLIISDVDHFKSVNDIHGHHVGD 216

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  ++  L         VGR GGEEF      +    A  LA  LR  I ++Q     
Sbjct: 217 EVLQAMAGLLRHGVRALDVVGRWGGEEFLIICPNTDLDGATALAEKLRAAIASAQF---- 272

Query: 213 GPSIHITISA-GIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            P I  + ++ G+A+    E     + RAD ALY AK +GRNR+
Sbjct: 273 -PGIGTSSASFGVAQYQDGESFKDTVARADTALYRAKVNGRNRI 315


>gi|254229585|ref|ZP_04922997.1| fog: ggdef domain containing protein [Vibrio sp. Ex25]
 gi|262394511|ref|YP_003286365.1| GGDEF family protein [Vibrio sp. Ex25]
 gi|151937868|gb|EDN56714.1| fog: ggdef domain containing protein [Vibrio sp. Ex25]
 gi|262338105|gb|ACY51900.1| GGDEF family protein [Vibrio sp. Ex25]
          Length = 445

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 26/169 (15%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDK 153
           ++L+  D L+G +N  A    L   + ++       SI++ D+D FK++ND FGH +GD 
Sbjct: 275 AELAHRDALTGAMNRHAVQHWLEQQSRQVRWGHSTFSILYMDLDKFKKVNDKFGHQMGDD 334

Query: 154 VIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           ++     + V+V  + ++      R GGEEF      ++  +A   +  +RK       N
Sbjct: 335 ILR----EFVMVVASSIYPDDRLVRWGGEEFVVFCPDTNIDQAVKKSEMIRK-------N 383

Query: 210 ISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + S   +H   +T S G+A+    E +S  + RAD+ LY AK++GRNRV
Sbjct: 384 VESHLWVHGESLTCSIGVAQ-MQNERVSETMARADEVLYQAKRNGRNRV 431


>gi|46201931|ref|ZP_00054098.2| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 290

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 13/171 (7%)

Query: 99  RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R S LS  D ++GL N           ++++      L+++  D+D+FK +ND +GH  G
Sbjct: 115 RESSLS--DPMTGLNNRRFLEEYVDTLVANVHRRKSALTVMMLDLDHFKMVNDTYGHDAG 172

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  LS  L         V R GGEEF    + +   EA  +A  +R ++E   + + 
Sbjct: 173 DAVLKALSKVLRQAVRASDMVIRFGGEEFLIVLVDTPCTEADQVAEKIRAMVE--ALTVQ 230

Query: 212 SGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +G  +I  TIS G+++     +     +  AD ALY AK++GRNRVV F++
Sbjct: 231 AGTVTIRKTISIGLSDFPTDSDTFWQAVKFADVALYQAKENGRNRVVRFNE 281


>gi|170720732|ref|YP_001748420.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida W619]
 gi|169758735|gb|ACA72051.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida W619]
          Length = 1098

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 16/174 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I  L+  D L+ L N +  +  L         +N + +++F D+D+FK IND+ GHPVG
Sbjct: 656 QIRHLAYHDPLTNLPNRALLMDRLSQQIALLRRHNLRGALLFLDLDHFKHINDSLGHPVG 715

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI------LANDLRKIIEN 205
           D V+  ++ +L         V RLGG+EF     G      A+      LA+ LR+++  
Sbjct: 716 DTVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSREAVENKVRELADTLRELL-- 773

Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           ++     G  + +T S G+A    H    + ++ RAD ALY AK SGRN    F
Sbjct: 774 AEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKRADIALYRAKDSGRNTTQLF 827


>gi|221069372|ref|ZP_03545477.1| diguanylate cyclase [Comamonas testosteroni KF-1]
 gi|220714395|gb|EED69763.1| diguanylate cyclase [Comamonas testosteroni KF-1]
          Length = 473

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 72/133 (54%), Gaps = 4/133 (3%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            +  +I+  D+D+FKQIND+FGH  GD+++      L  V      VGR+GGEEFA A  
Sbjct: 337 GQPFAILMLDLDHFKQINDSFGHAGGDQLLRSFCQTLTQVLRAQDIVGRMGGEEFAVALP 396

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHK-EPISTIIYRADQ 242
             +   A  +A  + + I   ++ +     +  T+S G+   +R    + +  ++  ADQ
Sbjct: 397 KVNAAAAQEIAKRINRAIRELRVPMDDQ-LMSATVSIGLIHTDRLQAHQSLDLLLQDADQ 455

Query: 243 ALYVAKKSGRNRV 255
           ALY AK +GR+RV
Sbjct: 456 ALYEAKAAGRDRV 468


>gi|187919786|ref|YP_001888817.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
 gi|187718224|gb|ACD19447.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
          Length = 503

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 12/169 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
           +++  L+R D L+GL N   F  +L    ++       LS++F DID FK  ND +GH  
Sbjct: 333 SKLQHLARTDALTGLSNRGTFDDTLQKEWQRANRSGRPLSLLFIDIDQFKAYNDYYGHQA 392

Query: 151 GDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD+V+  ++  + + V  +   V R GGEEF      +    A  +A  +R+ + +  + 
Sbjct: 393 GDEVLRAVAQCVGLCVLRSADQVARYGGEEFVVTLPDTDATGATNVAETVRRAVFDLNLE 452

Query: 210 ISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                   +T+S G+    ER  ++  +T++  AD ALY AK +GRNRV
Sbjct: 453 HVQSRYGRVTVSIGLVTSDERVARDG-ATLVNMADSALYEAKSTGRNRV 500


>gi|91203573|emb|CAJ71226.1| conserved hypothetical response regulator protein [Candidatus
           Kuenenia stuttgartiensis]
          Length = 685

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 73/133 (54%), Gaps = 2/133 (1%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           K +++F D+D FK +ND  GH  GD+++  LS  L         + RLGG+EFA     +
Sbjct: 293 KGALLFLDLDNFKYVNDTLGHQHGDELLIKLSCILKERLRQTDILARLGGDEFAVILPNT 352

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYV 246
            E++A  ++  L ++  N  + + S   +HIT+S GIA    H +   T++  AD A+Y 
Sbjct: 353 EEEQAQHISKQLVELTRNC-LALDSLNPLHITVSIGIAMFPAHGDTAETLLANADMAMYQ 411

Query: 247 AKKSGRNRVVCFS 259
           AK  GR+R   FS
Sbjct: 412 AKDEGRDRGCIFS 424


>gi|28869374|ref|NP_791993.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28852615|gb|AAO55688.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 730

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 105/209 (50%), Gaps = 21/209 (10%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH---- 115
           G   +L  ++  + ++ T  LL+   +   + +L  +  +I  L+  D L+GL N     
Sbjct: 246 GAPLVLDVSVEFITLNNTACLLM---NARDIGQLKSAQAQIQHLAYHDPLTGLPNRALLM 302

Query: 116 ---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
              S  +S L   N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         V
Sbjct: 303 DRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSVIAARLEASVRQEDTV 362

Query: 173 GRLGGEEFAA------AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA- 225
            RLGG+EF         +L     +  +LA++LR ++  ++     G  + +T S GI  
Sbjct: 363 ARLGGDEFVVLICGLDGSLEHVTHQVRVLADNLRVLL--AEPMFLDGHRLQVTPSVGIVL 420

Query: 226 -ERCHKEPISTIIYRADQALYVAKKSGRN 253
                  P + ++ RAD ALY AK SGRN
Sbjct: 421 IPDDGLTP-ADLLKRADIALYRAKDSGRN 448


>gi|71907229|ref|YP_284816.1| response regulator receiver modulated diguanylate cyclase
           [Dechloromonas aromatica RCB]
 gi|71846850|gb|AAZ46346.1| response regulator receiver modulated diguanylate cyclase
           [Dechloromonas aromatica RCB]
          Length = 313

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 90/178 (50%), Gaps = 10/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           ++ ++L  +   + ++S  D L+G+ N   F  ++         ++  ++++  DIDYFK
Sbjct: 130 AVTRKLDAANQELIRISSTDSLTGVANRRYFDEAMSIEWRRARRHSNSIALLMCDIDYFK 189

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GH  GD+ +  ++  +      P   V R GGE+FA     +S   A ++A  +
Sbjct: 190 LYNDTYGHQAGDECLRKIAAAISRHTERPSDTVARYGGEKFAVILPETSIGGALMVAEKI 249

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255
           R+  +   I  +S P+  + +S GIA        P   +I  AD+ALY AKK GR+RV
Sbjct: 250 RQATKELNITHASSPTGQVGLSIGIASAAPGFDNPPDDLILAADKALYRAKKEGRDRV 307


>gi|86147999|ref|ZP_01066302.1| putative regulatory component of sensory transduction system
           [Vibrio sp. MED222]
 gi|85834223|gb|EAQ52378.1| putative regulatory component of sensory transduction system
           [Vibrio sp. MED222]
          Length = 316

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 11/165 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q +  D L+ L N     + L       G  N  ++++  D+D+FK  NDN+GH  GD
Sbjct: 140 LQQQANEDGLTKLYNRRYMDTKLEESIAWHGRRNISMTVILLDVDFFKPYNDNYGHIQGD 199

Query: 153 KVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINI 210
           K +  L++ L  +F     FVGR GGEEF      +    A + AN +++ +   + ++ 
Sbjct: 200 KCLQGLANTLKELFVRAGEFVGRYGGEEFVIILSDTDSSAANLQANRVKEALHQMNYVHD 259

Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
            S  S  +T S G+     +  E I++I  + DQALY AK+SGRN
Sbjct: 260 YSAVSDRVTASQGVLSFIPEGGEAIASIYEKVDQALYQAKQSGRN 304


>gi|300991963|ref|ZP_07179747.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1]
 gi|300406898|gb|EFJ90436.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1]
          Length = 455

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 21/164 (12%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI      
Sbjct: 285 DSLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIK----T 340

Query: 162 LVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISS 212
           +V + G  +       R+GGEEF         + A  LA  +R+ +E     N +  I  
Sbjct: 341 VVSIIGKSIRPDDLFARVGGEEFGVLLTDIDTKRAKALAERIRENVERLTGDNPEYAIPQ 400

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              + I+I A + ++    P   I   AD ALY AK++GRN+VV
Sbjct: 401 --KVTISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 441


>gi|296390527|ref|ZP_06880002.1| diguanylate cyclase (GGDEF) domain [Pseudomonas aeruginosa PAb1]
          Length = 398

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 92/174 (52%), Gaps = 10/174 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL     ++  L+  D L+GL N   F       ++ +    + LS++  D+D+FK IN
Sbjct: 213 QELEEKNRQLEYLAGHDPLTGLFNRREFDQLVLMELARIARQPQPLSLLMVDLDHFKYIN 272

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHP GD+VI   ++ L     +   V RLGGEEF      ++EQ+A  LA  LR+ +
Sbjct: 273 DRYGHPFGDEVIRHAANLLRGNTRSSDSVARLGGEEFLLLLPDTAEQQARSLAEKLRERL 332

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           E + +    G  + +T S G+A  +   +     +   ADQALY AK SGRNRV
Sbjct: 333 EGTPLATQDG-VLCLTASFGVASLDGGGQASYEQLYSAADQALYRAKSSGRNRV 385


>gi|294011328|ref|YP_003544788.1| putative signal transduction protein [Sphingobium japonicum UT26S]
 gi|292674658|dbj|BAI96176.1| putative signal transduction protein [Sphingobium japonicum UT26S]
          Length = 655

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 98/196 (50%), Gaps = 14/196 (7%)

Query: 73  IISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYN 126
           I   T  ++L  + G   K +L + + R   L+R D L+G+ N  A    L     G  +
Sbjct: 190 ITKATHRIVLEALQGKYEKTQLAVKFER---LARFDSLTGVENRMAMQMRLREMFDGRRS 246

Query: 127 EK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           +K  +++ + D+D FK+IND+ GH +GD+++  ++++L         V R GG+EF    
Sbjct: 247 DKDPMAVFWMDLDRFKEINDSLGHMIGDQLLCRVAERLSHALDGRGHVARFGGDEFVLIC 306

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQA 243
            G+   EA  +A D+  + E +      G  + +T S GIA      +    ++  AD A
Sbjct: 307 PGADRSEAERIAGDI--MAEFTHDFDVGGYLLGVTASMGIAVAPEDGQDSDELLQHADMA 364

Query: 244 LYVAKKSGRNRVVCFS 259
           LY AK +GRNR   F+
Sbjct: 365 LYQAKHAGRNRHAQFT 380


>gi|227529903|ref|ZP_03959952.1| diguanylate cyclase [Lactobacillus vaginalis ATCC 49540]
 gi|227350182|gb|EEJ40473.1| diguanylate cyclase [Lactobacillus vaginalis ATCC 49540]
          Length = 362

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 104 SRIDCLSGLLNHSAF---ISSLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFL 158
           S  D L+GLLN+ A    IS+L    +  SIV    DID+FK+IND +GH VG++V+ + 
Sbjct: 187 SERDDLTGLLNYRALSQGISALTEDRDIHSIVIGGLDIDHFKRINDTYGHFVGNEVLNYF 246

Query: 159 S----DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           S     ++   F    +V R GGEEF       S +E   L   + K      I    G 
Sbjct: 247 STVFRKKIHEAFPDQGYVYRFGGEEFTIVVSNHSIEEVYALLQTIEKQFSEQPIVTKEGV 306

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            I I  S  +    + E +   + RAD+ LY  K +GR  +V
Sbjct: 307 KITINFSCSLTNHLNGELLDLTLKRADKMLYSVKNNGRGWIV 348


>gi|222110291|ref|YP_002552555.1| diguanylate cyclase [Acidovorax ebreus TPSY]
 gi|221729735|gb|ACM32555.1| diguanylate cyclase [Acidovorax ebreus TPSY]
          Length = 507

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 84/178 (47%), Gaps = 20/178 (11%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L    +R S  +R D L+G LN   F       I+     +  L +   D+D FK IND 
Sbjct: 336 LRQELDRASAQARHDPLTGSLNRKGFAEAMEREIARARRQDAPLCVALLDVDNFKSINDR 395

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD  +  L+     V      + R GGEEF    L  +E     LA  + K +E 
Sbjct: 396 LGHTAGDAALVHLAQVTREVMRPQDQLARYGGEEF-VIILPDTE-----LAEGV-KAMER 448

Query: 206 SQINISS------GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            Q  +++         + IT SAG+A+   ++  +  I RADQ +Y+AK++G+NRVV 
Sbjct: 449 LQRELTTRYFLKDQERVLITFSAGVAQVEGEQGSADAIRRADQGMYLAKRTGKNRVVA 506


>gi|148381302|ref|YP_001255843.1| putative diguanylate cyclase [Clostridium botulinum A str. ATCC
           3502]
 gi|153932736|ref|YP_001385680.1| putative diguanylate cyclase [Clostridium botulinum A str. ATCC
           19397]
 gi|153935193|ref|YP_001389086.1| putative diguanylate cyclase [Clostridium botulinum A str. Hall]
 gi|148290786|emb|CAL84920.1| putative signaling protein [Clostridium botulinum A str. ATCC 3502]
 gi|152928780|gb|ABS34280.1| putative diguanylate cyclase [Clostridium botulinum A str. ATCC
           19397]
 gi|152931107|gb|ABS36606.1| putative diguanylate cyclase [Clostridium botulinum A str. Hall]
          Length = 437

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 12/173 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQIND 144
           E + + N+I +LS I  L+  LN  +F+  L         N++ +SI+F D+DYFK+ ND
Sbjct: 256 ENYSANNKIKKLS-ICSLTYALNRGSFMEKLKDEFDNSKKNKRHISIIFIDVDYFKEYND 314

Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           N+GH  GDKV+  +   ++ V       VGR GG+EF          E  ++A ++ K I
Sbjct: 315 NYGHIEGDKVLMKIGKSIINVAKKYSGIVGRYGGDEFIVLLNKVETSELEVIAVEISKEI 374

Query: 204 ENSQINIS-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
              +I    S  S + T+S G+A    K  E I  +I  AD+ALY +K++GR+
Sbjct: 375 NKLKIKREYSHISKYQTVSIGVASIIPKKEEKIEDLINYADKALYKSKENGRD 427


>gi|330979900|gb|EGH78200.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 424

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 99/228 (43%), Gaps = 32/228 (14%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F+ L    +   +L I+   + L+   I+ ++  E +       Q++  D L+GL    A
Sbjct: 198 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 247

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
               +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        R GG
Sbjct: 248 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAYRYGG 307

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINI-------------------SSGPSIHI 218
           EEF       S  E       +R+ I + +I +                   +   S+ +
Sbjct: 308 EEFPIVFAAKSIDECMPHLEAIRETIASYEIQLRNKNDRPQDDQQGRQCRSGAQAGSVSV 367

Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           T+S G+AER   H+ P   ++  ADQALY AK +GRN VV +  +   
Sbjct: 368 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 414


>gi|86605201|ref|YP_473964.1| GGDEF/FHA domain-containing protein [Synechococcus sp. JA-3-3Ab]
 gi|86553743|gb|ABC98701.1| GGDEF/FHA domain protein [Synechococcus sp. JA-3-3Ab]
          Length = 261

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 11/162 (6%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F+  L         ++  L +++ D+D FK IND +GH  GD+ +  ++
Sbjct: 101 DPLTGLHNRRFFLEHLQREMAFARRHSFPLHLLYLDLDNFKLINDRWGHLAGDQALIQVA 160

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            QL         + R+GG+EF     G  E +   LA  LR+ +++  + + +   IH+T
Sbjct: 161 RQLQDQVRQEDLLARMGGDEFVLMVRGVPEAQILQLAKRLRQAVQSLPLQVGA-EVIHLT 219

Query: 220 ISAGIAER---CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            S G+A       +  + + +  ADQALY AK+ G NR V  
Sbjct: 220 CSIGVASWLSLSAETSVQSFLEAADQALYQAKRQGGNREVLL 261


>gi|50086421|ref|YP_047931.1| putative GGDEF family protein [Acinetobacter sp. ADP1]
 gi|49532397|emb|CAG70109.1| putative GGDEF family protein [Acinetobacter sp. ADP1]
          Length = 580

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 112/250 (44%), Gaps = 37/250 (14%)

Query: 35  FSIFIATVIFIANIF-LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK-- 91
           +  FI TV+   +IF L   GLT  Y   YIL+  +      + +SL   Y   +  K  
Sbjct: 337 WQKFILTVLI--SIFSLLVAGLTLRYIQRYILLPLMEARESILALSLPQSYGQENRKKKR 394

Query: 92  ------ELFISYNRISQL--------------SRIDCLSGLLNHSAFISSLGSYNEK--- 128
                 ELF +  ++ +L              +  D L+G+ N  A  +   +  ++   
Sbjct: 395 FKGEFAELFAAIAKLKRLLSQKDALEFQLRNIAHTDTLTGVANRQALEAYFIALEQEPWK 454

Query: 129 ---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              L ++  DIDYFKQIND +GH VGD+VI  ++DQL         + R GG+EF     
Sbjct: 455 WSDLCLMIIDIDYFKQINDQYGHMVGDQVIQRIADQLQQHVDVSDLIVRYGGDEFLILIE 514

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
             + ++A  LA  + K I      +   P I  ++S G+A         T+   ADQAL 
Sbjct: 515 DIAAEDALQLAEKISKSI----YTLCIAPDISTSVSIGLA--VGARNWLTLFQNADQALL 568

Query: 246 VAKKSGRNRV 255
            AK  G+NRV
Sbjct: 569 RAKAKGKNRV 578


>gi|88704937|ref|ZP_01102649.1| PAS/PAC sensory box/GGDEF family protein [Congregibacter litoralis
           KT71]
 gi|88700632|gb|EAQ97739.1| PAS/PAC sensory box/GGDEF family protein [Congregibacter litoralis
           KT71]
          Length = 438

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 16/172 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           + +++LS  D L+G+ N   F ++L         +  +L++V  DID FK  ND+FGH  
Sbjct: 262 DSLAKLSMTDGLTGIGNRRRFDTALENEWRRASRHGTELALVLADIDDFKAFNDDFGHLA 321

Query: 151 GDKVIAFLSDQLVVVFGTPM--FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--- 205
           GD  +  ++   +  FG  +   V R GGEE A    G S ++AA +A   R+ +E    
Sbjct: 322 GDDCLKNIA-AAIEAFGNRVGDCVARYGGEELAIILPGLSLEDAASVAEQCRQAVEALGI 380

Query: 206 SQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++     G S+ +TIS G+A      K+   T+I  AD+ LY AK SG+N+V
Sbjct: 381 ARKACGDGASV-VTISLGVAAMHPDSKDAAETLIEAADKQLYRAKSSGKNKV 431


>gi|325915298|ref|ZP_08177618.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325538491|gb|EGD10167.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 964

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 45/128 (35%), Positives = 69/128 (53%), Gaps = 1/128 (0%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L++   DID+FK IND +GH VGD V++ L + L        F  R GGEEF  AA G  
Sbjct: 836 LALALMDIDHFKHINDEYGHDVGDAVLSALGEALSDQDQAQCFAARHGGEEFLLAATGLD 895

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
            ++A  L   +R+ +    ++ + G ++  T S G+A          ++  AD+ LY AK
Sbjct: 896 AEQARALFERMRQRLATIDVD-AHGITVRCTASMGMAMSDEAPTRRELLALADRRLYQAK 954

Query: 249 KSGRNRVV 256
           + GR+R+V
Sbjct: 955 RQGRDRLV 962


>gi|313682434|ref|YP_004060172.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313155294|gb|ADR33972.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 324

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/134 (40%), Positives = 73/134 (54%), Gaps = 8/134 (5%)

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV--VVFGTPMFVGRLGGEEFA 181
            Y +KL ++ FDID FK IND FGH VGD V+  LS  LV   +  + +FV R GGEEFA
Sbjct: 192 QYTDKLFLLLFDIDNFKGINDTFGHNVGDSVLKELS-ALVSRSIRKSDIFV-RWGGEEFA 249

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                S       +A  +R++I+ +    S    +H+T S G+      E +     RAD
Sbjct: 250 ILLRYSDPSTVVKIAEQIRQLIDKN----SFETIVHVTCSFGLTSIQPAETLEQAFERAD 305

Query: 242 QALYVAKKSGRNRV 255
           +ALY AKK G+N V
Sbjct: 306 KALYRAKKDGKNCV 319


>gi|312134090|ref|YP_004001428.1| diguanylate cyclase [Caldicellulosiruptor owensensis OL]
 gi|311774141|gb|ADQ03628.1| diguanylate cyclase [Caldicellulosiruptor owensensis OL]
          Length = 296

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 19/194 (9%)

Query: 81  LLGYISGSI------LKELFISYNRISQLSRI---DCLSGLLNHSAFISSL------GSY 125
           LL  ++G I      L ++ ++Y +I++L+ +   D L+GL N       L       S+
Sbjct: 103 LLKDVTGKIFIEDIDLSDVQLTYQKINKLNELVVKDSLTGLYNRRFIDERLDVEIIRASF 162

Query: 126 NEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAA 183
           ++   SI   DIDYFK++ND +GH  GDKV+   +D +   +     +  R GGEEF   
Sbjct: 163 SKSYFSIAMADIDYFKKVNDTYGHTAGDKVLQTFADIIRKNIRIESDWAARYGGEEFLIF 222

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQ 242
                   A  +A  +RK +EN+ I + +   I IT S GI+    +      +I  AD+
Sbjct: 223 FQNQKSINAFEIAERIRKELENTVIKLENFE-IKITASFGISSLENYSMTSKELIKIADE 281

Query: 243 ALYVAKKSGRNRVV 256
            LY AK SGRN+VV
Sbjct: 282 KLYYAKNSGRNKVV 295


>gi|300926731|ref|ZP_07142506.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|301326922|ref|ZP_07220214.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|300417307|gb|EFK00618.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|300846393|gb|EFK74153.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
          Length = 430

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|296169116|ref|ZP_06850775.1| possible diguanylate cyclase with PAS/PAC sensor [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295896236|gb|EFG75898.1| possible diguanylate cyclase with PAS/PAC sensor [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 584

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 12/170 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148
           +  R+ +L+  D L+GL+N +  +  L +  E+       L ++F D+D FK+IND +GH
Sbjct: 416 AEQRLERLATFDTLTGLVNRAEAMGRLAAALEQPQPAGTCLGVLFCDVDQFKEINDTWGH 475

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR-KIIENS 206
             GD V+A L+ ++         VGR GG+E      G  S  E   +A  +R +  E  
Sbjct: 476 GTGDLVLATLAARIRESVRRGDTVGRTGGDEILVLLPGVGSIDEVTQIAEKIRCRAAEPI 535

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +   +G ++H T+S G       + + TI  RAD A+Y AK   +N VV
Sbjct: 536 DV---AGEALHATLSIGATVAVPGDSVDTITARADAAMYRAKLGDKNTVV 582


>gi|291085418|ref|ZP_06353032.2| diguanylate cyclase [Citrobacter youngae ATCC 29220]
 gi|291070928|gb|EFE09037.1| diguanylate cyclase [Citrobacter youngae ATCC 29220]
          Length = 570

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 75/163 (46%), Gaps = 7/163 (4%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      +L +         E +S +  DID+FK IND FGH  GD VI  ++
Sbjct: 406 DPLTGLRNRHHLEDTLRTQMSQAVRNKEPISCLMIDIDHFKNINDRFGHEAGDSVIKSIA 465

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +  V        R GGEEF     G+ EQ A   A D+   +    +        H+ 
Sbjct: 466 AIIQRVVHDSGLAFRYGGEEFLVLLAGADEQAANGFATDIYNGVRELSLRFGVSDIGHVD 525

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +S G+A          ++  AD ALY AK+ GR+R+V F  +E
Sbjct: 526 VSIGVASYPQHAQSDNLLRAADVALYRAKELGRSRIVSFGMLE 568


>gi|291286735|ref|YP_003503551.1| periplasmic/7TM domain sensor diguanylate cyclase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883895|gb|ADD67595.1| periplasmic/7TM domain sensor diguanylate cyclase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 614

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 90/179 (50%), Gaps = 10/179 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQIN 143
           KEL  +  R+ +L+ ID L+GL N   F  +L     +         I+  DIDYFK  N
Sbjct: 435 KELEEANQRLVELASIDVLTGLYNRRIFNETLQKEFSRAKRTGSLISIILIDIDYFKNYN 494

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD  +A L+D     V  +   + R GGEEFA     +    A  +A  +R  
Sbjct: 495 DYYGHLEGDACLAELADIFTNSVNRSTDTIARYGGEEFAIILCDTRLDGALKVAESIRFT 554

Query: 203 IENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +E S I     P  ++T+S GIA      ++    ++ +ADQALY AK SGRN+VV  S
Sbjct: 555 VEESCIPHKMSPIGYVTVSCGIASITPLMQDKPEDLLSKADQALYKAKSSGRNQVVTSS 613


>gi|302520942|ref|ZP_07273284.1| diguanylate cyclase [Streptomyces sp. SPB78]
 gi|302429837|gb|EFL01653.1| diguanylate cyclase [Streptomyces sp. SPB78]
          Length = 208

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 13/154 (8%)

Query: 104 SRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +R D L+GL    AF         +++  +V  D+D+FKQ+ND  GH  GD ++A ++ +
Sbjct: 29  ARRDPLTGLWTRDAFTRKARRLLRDKRAVVVLADVDHFKQVNDTHGHAAGDALLASVARR 88

Query: 162 LVVVFGTPMFVGRLGGEEFAAAAL---GSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           L    G     GRLGG+EFAA  L   G++    A+L   L +  E     +++      
Sbjct: 89  LAHATGADGVCGRLGGDEFAAVLLDKDGTAADLLALLHGVLARPAEGQPSEVAT------ 142

Query: 219 TISAGI--AERCHKEPISTIIYRADQALYVAKKS 250
           T+S G   A     E +S ++ RAD+A+Y AK++
Sbjct: 143 TVSLGWVRAADHSGEGLSALLGRADEAMYEAKRA 176


>gi|126640809|ref|YP_001083793.1| diguanylate cyclase [Acinetobacter baumannii ATCC 17978]
 gi|126386693|gb|ABO11191.1| diguanylate cyclase [Acinetobacter baumannii ATCC 17978]
          Length = 323

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 9/158 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL-----SIVFF--DIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+  L    F+ S+    EK+     +  FF  D+D+FK++ND++GH +GD+ +    
Sbjct: 162 DELTSSLTRRQFLQSVRLLQEKVQKENKTSAFFMLDVDHFKKVNDSYGHLIGDRALQTCV 221

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +  +      +GR GGEEFA     ++ + A  LA  +R  I    I +     I + 
Sbjct: 222 TTIQNILHPHDLLGRFGGEEFAIFIPDTTREAAFELAERIRIQISQQPIYVYGKLPIFVQ 281

Query: 220 ISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S GI+     +   I ++   AD ALY AK+ GRNRV
Sbjct: 282 VSIGISLYSPSYHRSIESLFKEADDALYQAKRQGRNRV 319


>gi|170725889|ref|YP_001759915.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169811236|gb|ACA85820.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
          Length = 581

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 89/173 (51%), Gaps = 17/173 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  +S ID L+G  N   F       + S   +N+ +SI+ FD+D FK  ND +GH +G
Sbjct: 401 QVKSISEIDGLTGAYNRRFFDHKLKHELKSTSKFNQPISIILFDVDNFKLFNDRYGHVIG 460

Query: 152 DKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D+ +  +S  L  +      +  R GGEEF      +  Q A+ +A  +R+  E  ++ I
Sbjct: 461 DQCLKRISYALKTLPEMQDRIFARYGGEEFIVFLTATDNQTASDIAEIMRE--EVIKLAI 518

Query: 211 SSGPSIH---ITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVC 257
               S+H    TIS G+    + EP     T+I++AD ALY AK SGRN +V 
Sbjct: 519 PHADSLHNELTTISIGVT-TSNSEPGITAETLIHQADIALYQAKASGRNCIVS 570


>gi|108804911|ref|YP_644848.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rubrobacter xylanophilus DSM 9941]
 gi|108766154|gb|ABG05036.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rubrobacter xylanophilus DSM 9941]
          Length = 545

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 86/160 (53%), Gaps = 10/160 (6%)

Query: 106 IDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           +D L+GLLN + F+  L      S +  +++++ D+D FK+IND FGH  GD+V+  ++ 
Sbjct: 122 MDPLTGLLNRTLFLDRLEHAACRSRHAAIALLYMDLDGFKEINDTFGHEAGDEVLREVAR 181

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHIT 219
           +L           R+GG+EF      S   EA  +A   R+++E+ +  I++G   + + 
Sbjct: 182 RLRSGLRPGDTAARIGGDEFGILLEDSRASEALRVA---RRLLEDLREPIAAGERRVCVA 238

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            S GIA  R        ++ RAD A+Y AK+ G+NR   F
Sbjct: 239 ASVGIAAGRGEDRGALHLMRRADLAMYRAKQRGKNRCEVF 278


>gi|39936282|ref|NP_948558.1| putative diguanylate cyclase/phosphodiesterase [Rhodopseudomonas
           palustris CGA009]
 gi|39650137|emb|CAE28660.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
           [Rhodopseudomonas palustris CGA009]
          Length = 656

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 83/174 (47%), Gaps = 23/174 (13%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGH 148
           E+  S   + Q++R D L+GL N S F  +        + ++ V FD+D FK IND  GH
Sbjct: 213 EVLNSNRALEQIARADPLTGLANRSHFRDAAADACRSGQGVAFVLFDVDNFKIINDTRGH 272

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF---------AAAALGSSEQEAAILANDL 199
             GD+VIA ++D L +  G+     RLGG+EF         AA AL  + + +  L   L
Sbjct: 273 DAGDRVIAAVADLLRLSCGSHDLPVRLGGDEFIVVLKGDDVAARALSLARRLSGALTRPL 332

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGR 252
           + +          G  + IT S GIA        +  +  RAD ALY AK  GR
Sbjct: 333 QVL----------GQPLAITCSIGIAAHPGGPIDVEDVFSRADAALYRAKDDGR 376


>gi|120597528|ref|YP_962102.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|120557621|gb|ABM23548.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|319427693|gb|ADV55767.1| diguanylate cyclase [Shewanella putrefaciens 200]
          Length = 454

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 8/176 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHS---AFISSLGSYNEK----LSIVFFDIDYFKQIND 144
           +L    NR  +  R D L+ LLN     A ++   SY+ +     +I+  DID+FK +ND
Sbjct: 276 DLLFEQNREVESGR-DVLTRLLNRKFLPAVMTKEVSYSRRNKSQFAILAIDIDHFKTVND 334

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           ++GH  GD V+  L+  L        ++ RLGGEEF    +  + +EAA+ A ++R+ +E
Sbjct: 335 SYGHEGGDLVLQHLAALLSNTGRGGDYLFRLGGEEFLMLLVDINAREAALSAENIRRKVE 394

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                +     + IT+S G+A           +  AD AL+ AK++GRN ++   D
Sbjct: 395 RETFLLPHNQQLQITVSIGLAMYDGHPDYQRCLRAADDALFAAKRAGRNCIITAID 450


>gi|326316268|ref|YP_004233940.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373104|gb|ADX45373.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 516

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 79/171 (46%), Gaps = 16/171 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
           +R S  +R D L+G LN      +L          +  L +   D+D FK IND  GH  
Sbjct: 350 DRASAQARHDPLTGSLNRKGLDEALDREVARALRNDAPLCVALLDLDNFKAINDRLGHTG 409

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENS 206
           GD+ +  L+     V      + R GGEEF       +L    +  A L  +L      +
Sbjct: 410 GDEALKHLAGVTREVMRPQDQLARYGGEEFVIILPDTSLAQGVEAMARLQREL-----TT 464

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  +     + IT SAG+A+   +E     I RADQ +Y+AK+SG+NRV+ 
Sbjct: 465 RYFLKDQEKVLITFSAGVAQLAPQETTVEAIRRADQGMYLAKRSGKNRVMA 515


>gi|269839222|ref|YP_003323914.1| response regulator receiver modulated diguanylate cyclase
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269790952|gb|ACZ43092.1| response regulator receiver modulated diguanylate cyclase
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 303

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 92/194 (47%), Gaps = 11/194 (5%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YN 126
           + +   L+  +   S+ ++L    +++ Q +RID L+G  N       L S       Y 
Sbjct: 108 VELRARLIAAHRITSLHQQLKELNDQLFQQARIDSLTGTYNRLRLQEDLASMDNRAARYG 167

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
              ++  FDID+FK+ ND +GH  GD+++  ++  ++        V R GGEEF      
Sbjct: 168 HTYALALFDIDHFKRYNDTYGHGAGDRMLCTVARTILSCCRASDSVYRYGGEEFLVLLPE 227

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIH--ITISAGIA--ERCHKEPISTIIYRADQ 242
                A  +A+ +R  ++   I     P     +T+SAG+A  +        T++  AD+
Sbjct: 228 QRCTTAVKVADRVRASVQGLGIPHEGRPDDPKVVTVSAGVADLDSARDRSAQTVLQLADE 287

Query: 243 ALYVAKKSGRNRVV 256
           ALY AK +GRN VV
Sbjct: 288 ALYRAKHAGRNTVV 301


>gi|213968028|ref|ZP_03396174.1| response regulator [Pseudomonas syringae pv. tomato T1]
 gi|301383655|ref|ZP_07232073.1| response regulator [Pseudomonas syringae pv. tomato Max13]
 gi|302063178|ref|ZP_07254719.1| response regulator [Pseudomonas syringae pv. tomato K40]
 gi|302131266|ref|ZP_07257256.1| response regulator [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213927371|gb|EEB60920.1| response regulator [Pseudomonas syringae pv. tomato T1]
 gi|331014725|gb|EGH94781.1| response regulator [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 551

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 10/157 (6%)

Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL NH+  +      S  S  E   + F   DID+FK++ND+ GHP+GD+VI  L+
Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRREGKPLCFAMLDIDHFKRVNDSHGHPMGDRVIKSLA 438

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
             L        F+GR GGEEFA     +    A  + +++R     ++I+  + P+ +  
Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIHNAHKVLDEIRHRF--AEIHYPAQPADLFC 496

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T SAG+      +   ++  +AD ALY AK +GRN+V
Sbjct: 497 TFSAGVVCLGADDDSLSLASQADTALYRAKHAGRNQV 533


>gi|90416683|ref|ZP_01224613.1| sensory transduction protein kinase [marine gamma proteobacterium
           HTCC2207]
 gi|90331436|gb|EAS46672.1| sensory transduction protein kinase [marine gamma proteobacterium
           HTCC2207]
          Length = 415

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 80/181 (44%), Gaps = 33/181 (18%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD---KVIAFL 158
           Q+   D L+ + N  A   +  +     SI   D DYFK+IND FGH +GD   +VIA L
Sbjct: 234 QIGYRDDLTQIGNRRALQQTAKTLRGPYSIAMVDADYFKKINDQFGHDLGDQALRVIASL 293

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN------------- 205
            +Q     G P    R GGEEF     G +EQE        R+ I N             
Sbjct: 294 LNQ-TAEGGKPF---RYGGEEFCLLFRGKTEQEVLDALEACRQAIANYDMVVRDKQLRPK 349

Query: 206 --SQINISSGPS-----IHITISAGIA--ERCHK----EPISTIIYRADQALYVAKKSGR 252
              Q     G S     + +T+S G+A  +  H      P   ++ RADQALY AK SGR
Sbjct: 350 KLKQGETRRGASKRKSNLRLTVSIGVASSDMAHSSNSLNPFEQVLKRADQALYRAKASGR 409

Query: 253 N 253
           N
Sbjct: 410 N 410


>gi|70731670|ref|YP_261412.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5]
 gi|68345969|gb|AAY93575.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5]
          Length = 308

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 1/122 (0%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+INDN GH  GD+V+  ++  +         V R GGEEF      +  + AA+
Sbjct: 185 DIDHFKRINDNHGHSAGDQVLKAVAAAIKGQLRNVDMVFRFGGEEFLILLSNTGREAAAM 244

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +   LR   + +Q   + G  I +T+S G +     E   +++ RAD ALYVAK+ GRNR
Sbjct: 245 VGERLRHAAQ-AQDYRADGQPIELTVSLGCSTLLPGESAESLLRRADSALYVAKREGRNR 303

Query: 255 VV 256
           + 
Sbjct: 304 LA 305


>gi|147669830|ref|YP_001214648.1| diguanylate cyclase with GAF sensor [Dehalococcoides sp. BAV1]
 gi|146270778|gb|ABQ17770.1| diguanylate cyclase with GAF sensor [Dehalococcoides sp. BAV1]
          Length = 841

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 89/181 (49%), Gaps = 18/181 (9%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y + +  +  D L+ L NH  F       I+    +    S++  D+D FK  ND +GH 
Sbjct: 459 YTQATIRANTDELTRLYNHRHFHERIEQEIARGSRFGNTFSLILLDLDLFKVYNDVYGHL 518

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+++  L   L     +     R GGEEFA    G+  ++A  +A  +RK IE+    
Sbjct: 519 AGDQLLRRLGKILENSIRSIDMAFRYGGEEFAIMLPGTKIEDAYHVAERIRKNIESK--- 575

Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            SS   + IT S G+A    +   KE    II +AD ALY +K++GRNR    +D+ NN+
Sbjct: 576 -SSFRDMPITASLGLANWPTDGVMKE---EIIAKADAALYRSKETGRNRTSLPADLNNNS 631

Query: 266 C 266
            
Sbjct: 632 T 632


>gi|15596304|ref|NP_249798.1| hypothetical protein PA1107 [Pseudomonas aeruginosa PAO1]
 gi|107100558|ref|ZP_01364476.1| hypothetical protein PaerPA_01001583 [Pseudomonas aeruginosa PACS2]
 gi|218892929|ref|YP_002441798.1| hypothetical protein PLES_42141 [Pseudomonas aeruginosa LESB58]
 gi|254234241|ref|ZP_04927564.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254239476|ref|ZP_04932798.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|9947025|gb|AAG04496.1|AE004541_1 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|126166172|gb|EAZ51683.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126192854|gb|EAZ56917.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218773157|emb|CAW28969.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
          Length = 398

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 92/174 (52%), Gaps = 10/174 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL     ++  L+  D L+GL N   F       ++ +    + LS++  D+D+FK IN
Sbjct: 213 QELEEKNRQLEYLAGHDPLTGLFNRREFDQLVLMELARIARQPQPLSLLMVDLDHFKYIN 272

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHP GD+VI   ++ L     +   V RLGGEEF      ++EQ+A  LA  LR+ +
Sbjct: 273 DRYGHPFGDEVIRHAANLLRGNTRSSDSVARLGGEEFLLLLPDTAEQQARSLAEKLRERL 332

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           E + +    G  + +T S G+A  +   +     +   ADQALY AK SGRNRV
Sbjct: 333 EGTPLATQDG-VLCLTASFGVASLDGGGQASYEQLYSAADQALYRAKSSGRNRV 385


>gi|330961138|gb|EGH61398.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 685

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 18/187 (9%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEK----LSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++      NEK    L +
Sbjct: 227 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVEGMLLRNEKADKYLVV 283

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189
           +F D+D FKQIND+ GH  GD+V+ ++++Q          + R+GG+EF      L   E
Sbjct: 284 LFMDLDGFKQINDSLGHDAGDQVLLWVAEQFKECMRPYDVLARVGGDEFTVVIDGLDYPE 343

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247
           Q A I    + ++    Q++   G  I +  S GIA    C    +  ++  AD A+Y A
Sbjct: 344 QAAKIAEKLIERVSSKRQVD---GVDIALGASVGIATYPDCGSN-LDGLLRAADIAMYEA 399

Query: 248 KKSGRNR 254
           K++GR +
Sbjct: 400 KRAGRKQ 406


>gi|308185511|ref|YP_003929643.1| hypothetical protein Pvag_pPag10133 [Pantoea vagans C9-1]
 gi|308055791|gb|ADO07961.1| Uncharacterized 80.5 kDa protein in ntrC 5'region [Pantoea vagans
           C9-1]
          Length = 709

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 10/179 (5%)

Query: 87  GSILKELFISYN---RISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFK 140
           G I++++   Y    R+ +L+ +D L+ L + SAF+  +G   +     +++  D+D FK
Sbjct: 258 GMIIRDVTARYESEARLCELASLDMLTRLASRSAFMDQVGQLTKAGVPYTLLMTDLDGFK 317

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND  GH  GD ++  +++Q+  V    +   RLGG+EF     G S  EAAI A  L 
Sbjct: 318 EVNDTLGHAAGDALLCHVAEQIRAVCAGAVTAARLGGDEFVILLAGGS-AEAAITAEKLI 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             ++ +       P + +  S GIA    H    S ++  AD ALY AK SG+   + F
Sbjct: 377 AAVQ-TPFRYHDSPVV-VGASTGIASYPEHGRDPSAVMSAADLALYRAKASGKGCSILF 433


>gi|302521275|ref|ZP_07273617.1| diguanylate cyclase [Streptomyces sp. SPB78]
 gi|302430170|gb|EFL01986.1| diguanylate cyclase [Streptomyces sp. SPB78]
          Length = 206

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 15/155 (9%)

Query: 104 SRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +R D L+GL    AF         +++  +V  D+D+FKQIND  GH  GD ++A ++ +
Sbjct: 29  ARRDPLTGLWTRDAFTRRARRLLRDKRAVVVLADVDHFKQINDTHGHAAGDALLASVARR 88

Query: 162 LVVVFGTPMFVGRLGGEEFAAAAL---GSSEQEAAILANDLRKIIENSQINISSGPS--- 215
           L    G     GRLGG+EFAA  L   G++    A+L   L +  E     +++  S   
Sbjct: 89  LAHATGADGVCGRLGGDEFAAVLLDKDGTAADLLALLHGVLARPAEGQPAEVATTVSLGW 148

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +  T  AG         +S+++ RAD+A+Y AK++
Sbjct: 149 VRATDHAGA-------DLSSLLERADEAMYEAKRA 176


>gi|218532240|ref|YP_002423056.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
 gi|218524543|gb|ACK85128.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
          Length = 369

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 87/170 (51%), Gaps = 13/170 (7%)

Query: 107 DCLSGLLNHSAFISSL----------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           D L+GL N  +F  SL              +  S++  DID FK+ ND +GH  GD+V+ 
Sbjct: 195 DALTGLGNRKSFEESLRKSVDLQSASAQQGKPASLIVIDIDSFKRFNDLYGHLTGDQVLR 254

Query: 157 FLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INISSGP 214
            ++  +    G     + R GGEEF      +   EA  +A  +R  +   + +  S+G 
Sbjct: 255 LVAIVMREHIGQRNATLARFGGEEFGIVLPETDRVEARAIAERVRIGVTGRELVKRSTGE 314

Query: 215 SI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           S+  +T+S G+A +   +   +++ RAD  L+ AK++GRNR +  +++EN
Sbjct: 315 SLGKVTVSLGVATQREDDNAVSLLERADACLFAAKRAGRNRTLDETEVEN 364


>gi|150021511|ref|YP_001306865.1| response regulator receiver modulated diguanylate cyclase
           [Thermosipho melanesiensis BI429]
 gi|149794032|gb|ABR31480.1| response regulator receiver modulated diguanylate cyclase
           [Thermosipho melanesiensis BI429]
          Length = 465

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 13/169 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDN 145
            KE F++       S+ D L+GL N    ++ +      Y E   +  FDID FK IND 
Sbjct: 295 FKEYFVA-------SQYDSLTGLYNKKVLMNKIEEYIDKYEEDTVLAIFDIDNFKSINDT 347

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH VGD V+  +++ +  +        R GGEEF       SE    I++    KI +N
Sbjct: 348 YGHVVGDNVLKEIANIIRSITKGNGICARYGGEEF-VILFTDSESAIEIVSKIYSKIRKN 406

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +  ++ +   I +T+S GIA   +   I+  I +AD+ LY AKK G++R
Sbjct: 407 NWPSLLNDNRI-VTVSCGIARYRNGLRITEFINKADELLYKAKKDGKDR 454


>gi|119946934|ref|YP_944614.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Psychromonas ingrahamii 37]
 gi|119865538|gb|ABM05015.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Psychromonas ingrahamii 37]
          Length = 711

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 33/197 (16%)

Query: 85  ISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFD 135
           +SG+++   EL  + ++I QL+  D L+GL N +AF       +     Y    +++F D
Sbjct: 245 VSGTVVDVTELTQAQDQILQLAHFDSLTGLANRNAFRKRVELAMERAKQYGHLGAVLFLD 304

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVG-------------RLGGEEFA 181
           +D FK+IND  GH +GD+++  ++ +L  +V G+    G             RLGG+EF 
Sbjct: 305 LDNFKRINDTLGHSIGDQLLQEVARRLTDIVRGSDSICGTNFNHAIDDNLISRLGGDEFT 364

Query: 182 A-----AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236
                   +  +E  A  + N +  II  S  +I   PSI I I        H E + ++
Sbjct: 365 VLLPEIGKIKDAEHAARRVLNSIGDIINLSGHDIVVTPSIGIAIFP-----HHGENVDSL 419

Query: 237 IYRADQALYVAKKSGRN 253
           +  AD A+Y  K++G+N
Sbjct: 420 LKNADAAMYYVKRAGKN 436


>gi|186472517|ref|YP_001859859.1| diguanylate cyclase with GAF sensor [Burkholderia phymatum STM815]
 gi|184194849|gb|ACC72813.1| diguanylate cyclase with GAF sensor [Burkholderia phymatum STM815]
          Length = 418

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 80/174 (45%), Gaps = 14/174 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +L   D L+GL N   F   L         Y   L  +F DID FK IND  GH +
Sbjct: 244 EQLERLGATDALTGLPNRRYFDERLREETMRASRYRLPLGCLFIDIDGFKPINDAHGHAI 303

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+ +A +   L         + R GGEEFA    G  +   A+ A  +R  +   +++ 
Sbjct: 304 GDRALALVGACLRKQTRLGDTIARYGGEEFAVLLQGDLKDSLAV-AERMRTAVAQLELHD 362

Query: 211 SSGPSIHITISAGIAERCHKEPIS------TIIYRADQALYVAKKSGRNRVVCF 258
           + G  I +T+S G +    +          T++  AD+A+Y AK  GRNRVV  
Sbjct: 363 NGGARIPLTVSIGASAHAMQSGSDLDRLGRTLVDEADRAMYKAKADGRNRVVTL 416


>gi|15801824|ref|NP_287842.1| hypothetical protein Z2421 [Escherichia coli O157:H7 EDL933]
 gi|15831179|ref|NP_309952.1| hypothetical protein ECs1925 [Escherichia coli O157:H7 str. Sakai]
 gi|168749015|ref|ZP_02774037.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4113]
 gi|168756026|ref|ZP_02781033.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4401]
 gi|168762638|ref|ZP_02787645.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4501]
 gi|168775170|ref|ZP_02800177.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4196]
 gi|168799655|ref|ZP_02824662.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC508]
 gi|189010557|ref|ZP_02807882.2| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4076]
 gi|189403280|ref|ZP_02794434.2| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4486]
 gi|191171038|ref|ZP_03032589.1| sensory box-containing diguanylate cyclase [Escherichia coli F11]
 gi|195938010|ref|ZP_03083392.1| hypothetical protein EscherichcoliO157_16502 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208810988|ref|ZP_03252821.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208816098|ref|ZP_03257277.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820633|ref|ZP_03260953.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209400929|ref|YP_002270401.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4115]
 gi|217329215|ref|ZP_03445295.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. TW14588]
 gi|291282436|ref|YP_003499254.1| hypothetical protein G2583_1690 [Escherichia coli O55:H7 str.
           CB9615]
 gi|300972032|ref|ZP_07171792.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1]
 gi|12515414|gb|AAG56456.1|AE005372_1 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13361390|dbj|BAB35348.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187769266|gb|EDU33110.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4196]
 gi|188016556|gb|EDU54678.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4113]
 gi|188999686|gb|EDU68672.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4076]
 gi|189356778|gb|EDU75197.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4401]
 gi|189361535|gb|EDU79954.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4486]
 gi|189367032|gb|EDU85448.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4501]
 gi|189377944|gb|EDU96360.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC508]
 gi|190908770|gb|EDV68358.1| sensory box-containing diguanylate cyclase [Escherichia coli F11]
 gi|208724494|gb|EDZ74202.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208732746|gb|EDZ81434.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740756|gb|EDZ88438.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209162329|gb|ACI39762.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4115]
 gi|209771348|gb|ACI83986.1| hypothetical protein ECs1925 [Escherichia coli]
 gi|209771350|gb|ACI83987.1| hypothetical protein ECs1925 [Escherichia coli]
 gi|209771352|gb|ACI83988.1| hypothetical protein ECs1925 [Escherichia coli]
 gi|209771354|gb|ACI83989.1| hypothetical protein ECs1925 [Escherichia coli]
 gi|209771356|gb|ACI83990.1| hypothetical protein ECs1925 [Escherichia coli]
 gi|217317654|gb|EEC26082.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. TW14588]
 gi|290762309|gb|ADD56270.1| hypothetical protein G2583_1690 [Escherichia coli O55:H7 str.
           CB9615]
 gi|300309254|gb|EFJ63774.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1]
 gi|320642611|gb|EFX11859.1| hypothetical protein ECO9389_21874 [Escherichia coli O157:H- str.
           493-89]
 gi|320647964|gb|EFX16672.1| hypothetical protein ECO2687_09804 [Escherichia coli O157:H- str. H
           2687]
 gi|320653567|gb|EFX21672.1| hypothetical protein ECO7815_06847 [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320659156|gb|EFX26748.1| hypothetical protein ECO5905_05446 [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|324011379|gb|EGB80598.1| diguanylate cyclase domain protein [Escherichia coli MS 60-1]
 gi|326340990|gb|EGD64783.1| hypothetical protein ECF_03538 [Escherichia coli O157:H7 str. 1125]
 gi|326343228|gb|EGD66995.1| hypothetical protein ECoA_02665 [Escherichia coli O157:H7 str.
           1044]
          Length = 430

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|320103469|ref|YP_004179060.1| diguanylate cyclase [Isosphaera pallida ATCC 43644]
 gi|319750751|gb|ADV62511.1| diguanylate cyclase [Isosphaera pallida ATCC 43644]
          Length = 367

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 97/212 (45%), Gaps = 18/212 (8%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G E + +    ++ IS  + L   + S   LK     +N++ +    D L+GL N    +
Sbjct: 124 GPEPVKLRENDIICISPEVRLKFLHHSPRSLKHHEEMFNKVVR----DDLTGLYNRMYVV 179

Query: 120 SSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L    ++       L++   D+D FK IND +GH VGD+V+  L   L  +   P F 
Sbjct: 180 EMLEGERDRNAYRGLGLALALIDLDRFKSINDTYGHQVGDQVLIELGGLLCELIPPPGFS 239

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAGI------A 225
            RLGGEEF +     S + A  LA  +R  + N    + + G  +H+T S G+       
Sbjct: 240 ARLGGEEFLSVYPAESLEFACRLAETIRIRVANQPFGMQTLGFPLHLTTSIGLLFLELTE 299

Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            R   +     I RAD  LY AK  GR++V+ 
Sbjct: 300 TRQPDDRSEHWITRADGLLYRAKAMGRDQVMA 331


>gi|254563309|ref|YP_003070404.1| diguanylate cyclase [Methylobacterium extorquens DM4]
 gi|254270587|emb|CAX26590.1| putative diguanylate cyclase (2 GGDEF motifs) [Methylobacterium
           extorquens DM4]
          Length = 355

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 87/170 (51%), Gaps = 13/170 (7%)

Query: 107 DCLSGLLNHSAFISSL----------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           D L+GL N  +F  SL              +  S++  DID FK+ ND +GH  GD+V+ 
Sbjct: 181 DALTGLGNRKSFEESLRKSVDRQSASAQLGKPASLIVIDIDSFKRFNDLYGHLTGDQVLR 240

Query: 157 FLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INISSGP 214
            ++  +    G     + R GGEEF      +   EA  +A  +R  +   + +  S+G 
Sbjct: 241 LVAIVMREHIGQKNATLARFGGEEFGIVLPETDRVEARAIAERVRIGVTGRELVKRSTGE 300

Query: 215 SI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           S+  +T+S G+A +   +   +++ RAD  L+ AK++GRNR +  +++EN
Sbjct: 301 SLGKVTVSLGVATQREDDNAVSLLERADACLFAAKRAGRNRTLDETEVEN 350


>gi|193067083|ref|ZP_03048052.1| sensory box-containing diguanylate cyclase [Escherichia coli
           E110019]
 gi|192959673|gb|EDV90107.1| sensory box-containing diguanylate cyclase [Escherichia coli
           E110019]
          Length = 430

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|163852479|ref|YP_001640522.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163664084|gb|ABY31451.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 352

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 79/164 (48%), Gaps = 18/164 (10%)

Query: 106 IDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            D L+GL N   F          +        S++  DID+FK +ND  GH  GD+V+  
Sbjct: 184 TDALTGLANRKTFDGFLRDSITRTRSDSGSTFSLLMLDIDHFKGLNDRHGHRFGDQVLRL 243

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFA----AAALGSSEQEAAILANDLR--KIIENSQINIS 211
           +   L           R GGEEFA     A +G+    A  +   LR  ++++    ++ 
Sbjct: 244 VGRLLSAKTTDRDLAARYGGEEFAIVLGEAGIGAGVALAQEICGRLRGQRLVKRGTGDVV 303

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +     +TISAG+A+    E    +I RAD+ALY AK++GR+RV
Sbjct: 304 A----QVTISAGVAQYRPGEAARDVIERADRALYEAKRTGRDRV 343


>gi|160873975|ref|YP_001553291.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160859497|gb|ABX48031.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|315266204|gb|ADT93057.1| diguanylate cyclase with extracellular sensor [Shewanella baltica
           OS678]
          Length = 507

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYF 139
           ++ ++L  S   +  LS  D L+ L N   F + L   NE+        + +V  DIDYF
Sbjct: 333 TLRQQLEASNAELEFLSTHDPLTKLYNRHYF-NRLFINNEQHDQSAKAGMCLVMIDIDYF 391

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND  GH VGD+++  +S  L         V R GGEEF      SS      L   +
Sbjct: 392 KEINDTLGHNVGDRILEQVSQVLQHCVRESDVVARWGGEEFVILCQQSSLPLVESLCVRI 451

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + I++ Q       ++ +T S G+A+    EP+     RAD+ALY AK  GRN++
Sbjct: 452 AERIKHYQFT----DNVQLTCSFGVAKLADNEPMMLCFERADRALYRAKAQGRNQM 503


>gi|77918711|ref|YP_356526.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77544794|gb|ABA88356.1| response regulator receiver modulated diguanylate cyclase
           [Pelobacter carbinolicus DSM 2380]
          Length = 323

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 14/165 (8%)

Query: 101 SQLSRI---DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
           SQL+RI   D L+GL N + F +++     +       LS++  D+D+FK+IND +GH  
Sbjct: 137 SQLARIALTDSLTGLYNRAYFDATITQEVARCSRRGLPLSLLMVDLDHFKKINDTYGHLA 196

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+ +A ++  L         V R GGEEFA     ++   AA +A  +RK I  SQ+++
Sbjct: 197 GDQALAAVALVLKEQSRISDTVCRFGGEEFAVILPETTNANAATVAERIRKKI--SQLDL 254

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +    +  +I  G A+  ++     +I  AD ALY AK  GRNRV
Sbjct: 255 AF--PVTASIGVGSAKVTNQLLPDHLIAEADGALYEAKSQGRNRV 297


>gi|167037787|ref|YP_001665365.1| PAS/PAC sensor-containing diguanylate cyclase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116202|ref|YP_004186361.1| diguanylate cyclase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856621|gb|ABY95029.1| diguanylate cyclase with PAS/PAC sensor [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929293|gb|ADV79978.1| diguanylate cyclase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 302

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 16/167 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  L+ ID L+G+LN           I     YN K +++F D+D FK IND +GH +G
Sbjct: 135 KLRNLAFIDELTGVLNRRGLDFFIKEKIKETKRYNRKFAVLFIDLDNFKDINDLYGHHIG 194

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEE----FAAAALGSSEQEAAILANDLRKIIENSQ 207
           DKV+  + + L         V R GG+E    F    + S E+    LA  +  +IENS 
Sbjct: 195 DKVLKMIGETLKSNLRANDIVARFGGDEFIVIFEIEDINSIEE----LAQKMITLIENSF 250

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
                G  I ++ S G      ++    ++ +AD+ +YV+K  G+NR
Sbjct: 251 FE-EKGQIIKVSASIGGVMIKKEDTPEKLLKKADRLMYVSKAKGKNR 296


>gi|213971020|ref|ZP_03399141.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
 gi|301385583|ref|ZP_07234001.1| GGDEF domain protein [Pseudomonas syringae pv. tomato Max13]
 gi|302058833|ref|ZP_07250374.1| GGDEF domain protein [Pseudomonas syringae pv. tomato K40]
 gi|302132138|ref|ZP_07258128.1| GGDEF domain protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213924256|gb|EEB57830.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
          Length = 677

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 80/157 (50%), Gaps = 8/157 (5%)

Query: 106 IDCLSGLLNHSAFISSLGS-----YNEKLSIV--FFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+ L N +A+   L         +K S++    D+D+FK+IND +GH  GDKV+  +
Sbjct: 519 IDPLTSLPNRAAWGERLEQEMADWQRDKNSLLVCILDLDHFKRINDGYGHLAGDKVLKIV 578

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           ++          F+ R GGEEF      +       L ++LR  +E    +   G  + I
Sbjct: 579 ANVFKKRLRPADFLARFGGEEFVMLLPATLLGAGLTLLDELRTAVELCPFHFK-GERVTI 637

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T+S G+      E   T I RADQALY AK++GRNRV
Sbjct: 638 TVSIGVTALRTGERSDTAIKRADQALYRAKENGRNRV 674


>gi|153837196|ref|ZP_01989863.1| putative virulence-mediating protein VirC [Vibrio parahaemolyticus
           AQ3810]
 gi|149749459|gb|EDM60213.1| putative virulence-mediating protein VirC [Vibrio parahaemolyticus
           AQ3810]
          Length = 592

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 18/168 (10%)

Query: 100 ISQLSRIDCLSGLLNH---SAFISSLG--SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           ++Q S  D L+GL N      ++  +   + N   ++   D+D+FK  ND +GH +GD++
Sbjct: 423 LTQESTTDLLTGLHNRRYLEVWLEKMARRTPNRTFALAVLDVDHFKAFNDTYGHDIGDQM 482

Query: 155 IAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           +  ++     +F      G    R GGEEF      +   + A     LR +IEN+ + I
Sbjct: 483 LMHIAS----IFNESTRSGDLLIRWGGEEFVLLVEVNDPNDCAKSLERLRHVIENTPLII 538

Query: 211 SSGPSIHITISAGIAERCH----KEPISTIIYRADQALYVAKKSGRNR 254
            S P I+ TIS G  +R      K+      + ADQALY AK++GRN+
Sbjct: 539 DSKP-INATISLGAVDRLSAQTIKQEWDQWFFLADQALYDAKQAGRNQ 585


>gi|325271495|ref|ZP_08138013.1| diguanylate cyclase [Pseudomonas sp. TJI-51]
 gi|324103385|gb|EGC00714.1| diguanylate cyclase [Pseudomonas sp. TJI-51]
          Length = 427

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 30/204 (14%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVF 133
           ++I  S ++  I+ ++  E +       Q++  D L+GL    A    +        I  
Sbjct: 219 LNIMCSQVMLMIAAAVAHEAY-------QMAFRDELTGLPGRRALNERMQRLGRNYVIAM 271

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D+FK+ ND  GH VGD+V+  ++ +L  V        R GGEEFA    G + +E  
Sbjct: 272 TDVDHFKKFNDTHGHDVGDQVLRLVASRLAKV-TGGGRAYRYGGEEFALVFAGKTAEECV 330

Query: 194 ILANDLRKIIENSQINI-------------------SSGPSIHITISAGIAERC--HKEP 232
                +R++I N  +++                   SSG ++ +TIS G+AER   H+ P
Sbjct: 331 PHVEAVREVIANYVMHLRDKYNRPQDDTAGRQRRAGSSGGTVSVTISIGVAERQADHRNP 390

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
              ++  ADQALY AK +GRN VV
Sbjct: 391 -EAVLKSADQALYDAKGAGRNCVV 413


>gi|323172288|gb|EFZ57925.1| hypothetical protein ECLT68_2938 [Escherichia coli LT-68]
          Length = 430

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|315178611|gb|ADT85525.1| hypothetical protein vfu_A00298 [Vibrio furnissii NCTC 11218]
          Length = 497

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 84/164 (51%), Gaps = 14/164 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS--IVFFDIDYFKQINDNFGHPVGDKVI 155
           N + + S ID L+GL N  A  + L S  E  +  +   DIDYFK IND +GH  GD V+
Sbjct: 330 NTLRKESLIDGLTGLNNRRALDNDLPSLIEDGATLVAMLDIDYFKSINDTYGHQTGDTVL 389

Query: 156 ---AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
              A +++  +    T ++  R GGEEF    +  +  +A  +   LR  I  +Q     
Sbjct: 390 KTFAAIAEAQLPPQSTRIY--RYGGEEFIIVFVRVTPSQALEMLEQLRLSI--AQYQWHQ 445

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           GP   +T SAG+A     + IS     AD  LY AK+SGRNR+V
Sbjct: 446 GPH-QVTFSAGLASCADADAISL----ADARLYEAKRSGRNRIV 484


>gi|315127561|ref|YP_004069564.1| GGDEF domain-containing protein [Pseudoalteromonas sp. SM9913]
 gi|315016075|gb|ADT69413.1| GGDEF domain-containing protein [Pseudoalteromonas sp. SM9913]
          Length = 399

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 17/165 (10%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+ L    A      S   K ++   DID+FK+ ND +GH +GD+V+  ++ ++  V 
Sbjct: 234 DDLTSLPTRRALNQLALSLGRKYTVAMLDIDHFKKFNDTYGHDIGDQVLKLVAAKMSGVK 293

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-------IIENSQ---------INI 210
           G    + R GGEEF       + +++      LR+       +I N +            
Sbjct: 294 GGGK-IYRYGGEEFTVVFPRKTAEQSIPELETLRQNIATYDMVIRNPKRTDKKSRKGKQP 352

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S   ++++T+S G+A+R  K+     +  AD ALY AKK GRN V
Sbjct: 353 SDNKTVNVTVSIGVAQRTAKQTFDEALKNADLALYRAKKKGRNNV 397


>gi|300927855|ref|ZP_07143417.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
 gi|300464140|gb|EFK27633.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
          Length = 430

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|229521483|ref|ZP_04410902.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
 gi|229341581|gb|EEO06584.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
          Length = 358

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 102/198 (51%), Gaps = 18/198 (9%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           I+V+NL   II  T+ +L       + +E  I ++R+  +   D L+G  N   F   + 
Sbjct: 167 IVVQNLFFFIILGTMLMLF------LFEE--IEWHRLRSIQ--DELTGAFNRRHFKEQVQ 216

Query: 124 SYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
              ++      +   DID+FKQIND++GH +GD VI ++   L  +  T   V R GGEE
Sbjct: 217 KKLKQSKQKAMVALVDIDHFKQINDSYGHDIGDSVITYVVRHLESLALTECLVARYGGEE 276

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIY 238
           FA  A  +  +  +   + +R  I +   ++   P  + ++I A I E  H+     ++ 
Sbjct: 277 FAIFASENDFERVSQALDSVRDAI-SVGFHVEQQPLKLSVSIGAVIFESSHE--YGEVLR 333

Query: 239 RADQALYVAKKSGRNRVV 256
           +AD+ALY AK+ GRNR++
Sbjct: 334 QADKALYQAKQQGRNRIM 351


>gi|90412493|ref|ZP_01220496.1| putative c-di-GMP phosphodiesterase A-related protein
           [Photobacterium profundum 3TCK]
 gi|90326530|gb|EAS42936.1| putative c-di-GMP phosphodiesterase A-related protein
           [Photobacterium profundum 3TCK]
          Length = 679

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 17/182 (9%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           E  +   ++ QL   D L+GL N   F   + SL +    L +++ DID FK IND+ GH
Sbjct: 241 ENTVQQGQVEQLVHTDPLTGLYNRHGFSRRLESLITNETPLVMLYLDIDNFKNINDSLGH 300

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+V+  +S +L  +      +G LGG+EF    L   E + A        ++    I
Sbjct: 301 HIGDRVLQEISQRLRRLLPENAIIGHLGGDEF-GIVLSEPEHDRA------GDLVAQQVI 353

Query: 209 NISSGP------SIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           ++ + P      S H+  S G ++   +      ++  AD A+Y AK  GRNR+V F++ 
Sbjct: 354 SLINQPFDLHHFSKHLACSIGMVSYPGNGNDARILLQNADTAMYEAKNRGRNRLVKFNEA 413

Query: 262 EN 263
            N
Sbjct: 414 MN 415


>gi|189500280|ref|YP_001959750.1| diguanylate cyclase [Chlorobium phaeobacteroides BS1]
 gi|189495721|gb|ACE04269.1| diguanylate cyclase [Chlorobium phaeobacteroides BS1]
          Length = 436

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 88/191 (46%), Gaps = 21/191 (10%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           +    L ELFI           D  + L N+  F       ++    ++EK+SI   DID
Sbjct: 254 VKNKKLDELFIK----------DEKTNLYNYRHFKDHLIVDVARAKRFDEKVSIAMIDID 303

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK  ND  GH  GD V+  ++  +           R GGEEFA     +  ++A  +  
Sbjct: 304 RFKAYNDANGHVAGDIVLEKMARIIREECRESDIPARFGGEEFAVLFSRTDSRKAIEIVE 363

Query: 198 DLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNR 254
            LR +IE     +    P   +T+SAGIA  C  +     ++I  AD+ALY AK +GRNR
Sbjct: 364 RLRSVIEAEPFYHEKELPDGQLTVSAGIAT-CPDDAADWYSLINNADKALYRAKNTGRNR 422

Query: 255 VVCFSDIENNT 265
           VV F ++ +  
Sbjct: 423 VVHFRELADQN 433


>gi|15642692|ref|NP_232325.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121586618|ref|ZP_01676403.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121726689|ref|ZP_01679914.1| GGDEF family protein [Vibrio cholerae V52]
 gi|153821269|ref|ZP_01973936.1| GGDEF family protein [Vibrio cholerae B33]
 gi|227082813|ref|YP_002811364.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|229507255|ref|ZP_04396760.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229509823|ref|ZP_04399304.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229516945|ref|ZP_04406391.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229606762|ref|YP_002877410.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254851233|ref|ZP_05240583.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255744343|ref|ZP_05418295.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262158547|ref|ZP_06029662.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|298500487|ref|ZP_07010291.1| GGDEF family protein [Vibrio cholerae MAK 757]
 gi|9657293|gb|AAF95838.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121549177|gb|EAX59210.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121630850|gb|EAX63232.1| GGDEF family protein [Vibrio cholerae V52]
 gi|126521201|gb|EAZ78424.1| GGDEF family protein [Vibrio cholerae B33]
 gi|227010701|gb|ACP06913.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|229346008|gb|EEO10980.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229353297|gb|EEO18236.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229354760|gb|EEO19681.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229369417|gb|ACQ59840.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254846938|gb|EET25352.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255737868|gb|EET93261.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262029708|gb|EEY48357.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|297540656|gb|EFH76713.1| GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 312

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 8/167 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFI--SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           IS     + S+ID L+ L N   F   S   +    L ++ FDID+FKQIND +GHP GD
Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPETLLGLIIFDIDHFKQINDTYGHPAGD 205

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L           R GGEEF              LA ++R  +E+  + +  
Sbjct: 206 YVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANVIGLAENIRDYVESHTL-MWQ 264

Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  I +T+SAG    A   H      +++ ADQAL  AK+ GRNRV+
Sbjct: 265 GQQIALTLSAGCTMGAMMSHN--WDNLLHTADQALLSAKRLGRNRVI 309


>gi|312945977|gb|ADR26804.1| hypothetical protein NRG857_06880 [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 430

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|294139915|ref|YP_003555893.1| GGDEF domain-containing protein [Shewanella violacea DSS12]
 gi|293326384|dbj|BAJ01115.1| GGDEF domain protein [Shewanella violacea DSS12]
          Length = 518

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 8/163 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +L+ +D L+ L N +A    +         + + L +   DID+FK IND+FGH  GDK
Sbjct: 354 QKLNLLDTLTQLPNRAALEERMELEFRNYQRHKQPLWVAVADIDHFKTINDSFGHSTGDK 413

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  ++  L        FV R GGEEF       +  + A L N +R+ +++        
Sbjct: 414 TLQVIAMALKNSLRDTEFVARYGGEEFVLIIPDVNATDIAQLLNRVREKVKSIPFKF-KN 472

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I +T+S G A+  + E I+    RAD ALY AK   R+RV+
Sbjct: 473 QRITVTVSIGAAQIINNELINETFDRADAALYRAKHESRDRVI 515


>gi|260770462|ref|ZP_05879395.1| GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260615800|gb|EEX40986.1| GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|315181532|gb|ADT88445.1| GGDEF family protein [Vibrio furnissii NCTC 11218]
          Length = 385

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 20/166 (12%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+ L    A    +     K ++   D+D+FK  ND++GH  GD V+  ++ +L +V 
Sbjct: 215 DRLTQLPGRHALELDMRHLGRKFTVAMVDVDHFKSFNDSYGHETGDDVLKLVAARLRMVQ 274

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP--------- 214
           G    V R GGEEF     G + ++A      LR  IE   +   N+ S P         
Sbjct: 275 GRAK-VYRYGGEEFTVLFKGKTAEQAMDYLELLRADIEAYDLVIRNLESRPKNDKDGAKQ 333

Query: 215 -------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
                  S++IT+S G+ +   +   +  +  ADQALY AKK+GRN
Sbjct: 334 RSDSKRMSVNITVSIGLCDSTLQRDPNEALKFADQALYAAKKAGRN 379


>gi|222054925|ref|YP_002537287.1| diguanylate cyclase [Geobacter sp. FRC-32]
 gi|221564214|gb|ACM20186.1| diguanylate cyclase [Geobacter sp. FRC-32]
          Length = 418

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 111/225 (49%), Gaps = 26/225 (11%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITIS-------LLLGYISGSILKELFISYNRIS 101
           F  Y+ +T +   E+I V   S +++ + IS       +++  ++G + K     +  + 
Sbjct: 197 FEIYVDVTKYRN-EHINVVVTSAIMLLLVISAVHVGALVVVRKLTGQLKK----VHAELE 251

Query: 102 QLSRIDCLSGLLNHSAFIS-----SLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDK 153
           Q++  D L+G+ N    +S     ++    E    + ++  D+DYFK +ND +GH VGD+
Sbjct: 252 QMAIKDELTGIFNRRHILSKANFKAISRQREGELTIGVLNMDVDYFKSVNDTYGHLVGDE 311

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  +S +L          GR+GGEEF      ++  E   +A  + + +     ++   
Sbjct: 312 VLKEISRRLTDSCRASDLAGRIGGEEFIVLLPDTAMTEIIAIAERIHRSVGEKPFHVEQ- 370

Query: 214 PSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRV 255
             + +TIS G+A  C    ++ +S  I RAD ALY AK  GRNR+
Sbjct: 371 HDLAVTISVGVA--CTLPGEKDLSQAIRRADTALYRAKNMGRNRI 413


>gi|225163776|ref|ZP_03726075.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224801606|gb|EEG19903.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 306

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 84/160 (52%), Gaps = 10/160 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L    E+       LS+V  DID+FK IND  GH  GD V+  ++
Sbjct: 137 DTLTGLNNRHEFERLLADELERARLLGHPLSLVMCDIDHFKTINDTRGHAAGDAVLREVA 196

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +L         +GR GGEEFA    G+ ++ A  +A  +   +  S I  +  P + +T
Sbjct: 197 SRLRSALRASDRIGRFGGEEFAVLLAGADQEAARHIAVRMVAAVAASPITPAPFPGLSVT 256

Query: 220 ISAGIAERCHKEPISTI---IYRADQALYVAKKSGRNRVV 256
           ISAG+A     +P +T+      ADQALY AK +GRNRVV
Sbjct: 257 ISAGVAGLRRPQPENTVAALFAAADQALYAAKHAGRNRVV 296


>gi|160875202|ref|YP_001554518.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella baltica OS195]
 gi|160860724|gb|ABX49258.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS195]
 gi|315267395|gb|ADT94248.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS678]
          Length = 749

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 9/162 (5%)

Query: 107 DCLSGLLNHSAF---ISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N +A    I SL    S     S +  D+D FKQ+ND  GH  GD ++  +  
Sbjct: 318 DSLTGLANRNALFKQIQSLITSDSLTPGFSFMLMDLDNFKQVNDTHGHDKGDALLVQVVR 377

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           Q+       M   RLGG+EFA    G  +++E A LA  + K +    + ++ G  ++ +
Sbjct: 378 QICECLNDTMMFARLGGDEFALLLPGIVNQKELAQLAETINKHVAKRYV-LADGKGVYSS 436

Query: 220 ISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +S GIA        +  ++  ADQA+Y++K +GRNR   F++
Sbjct: 437 VSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTE 478


>gi|54298644|ref|YP_125013.1| hypothetical protein lpp2708 [Legionella pneumophila str. Paris]
 gi|53752429|emb|CAH13861.1| hypothetical protein lpp2708 [Legionella pneumophila str. Paris]
          Length = 371

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 110/225 (48%), Gaps = 27/225 (12%)

Query: 48  IFLFYIGLTPFYGL--EYIL-VENLS-LVIISITISLLLGYISGS-----ILKE----LF 94
           +F FYI   P Y +  EY+  ++N + L I ++  ++L  ++  +     +LKE    L 
Sbjct: 143 VFEFYI---PIYSISQEYVFFLDNTNHLFIFALIFTVLYHFLVQNSQYELLLKEQNYLLI 199

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147
               +   LS  D L+ L N S F + L +         E +++ F D+D FK IND +G
Sbjct: 200 ADKEKFHYLSHHDSLTNLPNRSYFHAHLQTLLENTDTTKEAITLYFMDLDKFKPINDEYG 259

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+++   S +L   F    F+ RLGG+EF A  +     + A  A  LR   E  Q
Sbjct: 260 HEFGDQLLLLTSKRLQSCFRKNDFIARLGGDEFTAIIVHKPHDQIA-EALTLRIEQEFEQ 318

Query: 208 INISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKS 250
             + +G +IH TIS GIA   R  K     ++  AD+A+Y  K+ 
Sbjct: 319 PFVINGQTIHCTISVGIANYPRNAKNA-EDLLKWADKAMYYNKRK 362


>gi|331652391|ref|ZP_08353410.1| putative GGDEF domain protein [Escherichia coli M718]
 gi|331050669|gb|EGI22727.1| putative GGDEF domain protein [Escherichia coli M718]
          Length = 430

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|330940755|gb|EGH43753.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 525

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 90/181 (49%), Gaps = 23/181 (12%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQIND 144
           EL I+ N +  ++  D L+ L N   F ++L       S N+  ++I+  DID+FKQ ND
Sbjct: 328 ELNIARNDLEIIAHTDSLTHLANRRCFDTALQQEWGRASRNDATIAIILLDIDWFKQYND 387

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDL 199
            +GH  GD  +     Q+  + G  +        R GGEEF      +    A  LA  +
Sbjct: 388 TYGHLQGDDCLR----QVAGLIGNSLDRSGDMAARYGGEEFVILLPETDLAGALRLAEKI 443

Query: 200 RKIIENSQINISSGPSIHITISAGI-----AERCHKEPISTIIYRADQALYVAKKSGRNR 254
           R  IE S I  SS P   ++IS+G+     AE+  K+  +  +  AD+ LY+AK  GRNR
Sbjct: 444 RSSIEASCIEHSSSPLGRLSISSGVVAINAAEK--KDEHTAALKEADRLLYLAKTKGRNR 501

Query: 255 V 255
           V
Sbjct: 502 V 502


>gi|330911205|gb|EGH39715.1| hypothetical protein ECAA86_01548 [Escherichia coli AA86]
          Length = 430

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|301647158|ref|ZP_07246979.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|331641908|ref|ZP_08343043.1| putative GGDEF domain protein [Escherichia coli H736]
 gi|301074644|gb|EFK89450.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|331038706|gb|EGI10926.1| putative GGDEF domain protein [Escherichia coli H736]
          Length = 430

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|299066447|emb|CBJ37634.1| putative diguanylate cyclase (GGDEF domain) [Ralstonia solanacearum
           CMR15]
          Length = 533

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 91/188 (48%), Gaps = 18/188 (9%)

Query: 84  YISGSILKELFISYNRIS--QLSRI------DCLSGLLNHSAFISSL---GSYNEKLSIV 132
           YI    LK   +   R++  +++R+      D L+GL N     ++L      ++  S V
Sbjct: 328 YIEAHRLKRALLRGTRLTSTRMARLNLEALTDPLTGLYNRRGVANALRLHAGRHQPFSAV 387

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK+IND +GH VGD+V+  L+  +          GR+GGEEF      ++   A
Sbjct: 388 TLDVDHFKRINDRYGHDVGDQVLRHLAALIREQARHGDITGRIGGEEFILLLPDATPDGA 447

Query: 193 AILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250
              A  LR  +E         P+   +T+S G+A        +  ++  +D ALY AK+ 
Sbjct: 448 FKTAERLRLAVE-----ARPNPTGQVVTVSLGVAHYPQSAGEVDAVLKLSDLALYQAKRD 502

Query: 251 GRNRVVCF 258
           GRNR+V +
Sbjct: 503 GRNRIVVY 510


>gi|265999096|ref|ZP_05464990.2| GGDEF domain-containing regulatory protein [Brucella melitensis bv.
           2 str. 63/9]
 gi|263092193|gb|EEZ16490.1| GGDEF domain-containing regulatory protein [Brucella melitensis bv.
           2 str. 63/9]
          Length = 240

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 113/229 (49%), Gaps = 23/229 (10%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY- 97
           IAT+I I+       G+    G++   V  L  +++   I++LLG    S L+EL  SY 
Sbjct: 21  IATIISIS----LSTGIRFALGVKSDTVTILVRLLLPFLIAMLLGVFWFSRLEELERSYR 76

Query: 98  ------NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFGH 148
                 N +++++ +D L+GLLN  +FI    + N+     +F   D+DY KQIND +GH
Sbjct: 77  TAVKRANELARVASVDPLTGLLNRRSFIQQFNAANKAGVRGWFLIVDVDYLKQINDQYGH 136

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILAN-DLRK--IIE 204
           P GD  I  ++  L     +   + R+GG+EF A    G+     ++L++  LR   ++ 
Sbjct: 137 PAGDDAIIAVAQALEDCLSSDSLIARIGGDEFCAFVPKGAINDVDSVLSDISLRADGLLR 196

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             + N+ S     +T+S G       +    ++  AD+ LY  KKS R 
Sbjct: 197 EKRPNVGS----SLTVSVGRISCKTGQIFEEVLSIADEQLY-RKKSQRQ 240


>gi|222148419|ref|YP_002549376.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221735407|gb|ACM36370.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 413

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 73/156 (46%), Gaps = 4/156 (2%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           S ID L+G+LN  AF     S   K +  +   D+D+FK IND  GH  GD  +      
Sbjct: 225 SEIDMLTGVLNRRAFYERAQSQMHKNAGVLALIDLDHFKYINDAHGHAGGDAALCAFGKT 284

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           ++      M  GRLGGEEFA      +  EA    + LR+ +           +I +TIS
Sbjct: 285 MIEQLDANMVFGRLGGEEFALFMPQMTGGEALSFCDGLRQSVARLTTPWRDA-TITMTIS 343

Query: 222 AGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            G+ E       +  +  RAD ALY AK  GR+R +
Sbjct: 344 IGMHEVVKAGADLDAVSLRADAALYQAKDQGRDRCI 379


>gi|270308545|ref|YP_003330603.1| GGDEF domain protein [Dehalococcoides sp. VS]
 gi|270154437|gb|ACZ62275.1| GGDEF domain protein [Dehalococcoides sp. VS]
          Length = 836

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 87/178 (48%), Gaps = 12/178 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y + +  +  D L+ L NH  F       I+    +    S++  D+D FK  ND +GH 
Sbjct: 459 YTQATIRANTDELTRLYNHRHFHERIEQEIARGSRFGNTFSLILLDLDLFKVYNDVYGHL 518

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+++  L   L     +     R GGEEFA    G+  ++A  +A  +RK IE+    
Sbjct: 519 AGDQLLRRLGKILENSIRSIDMAFRYGGEEFAIMLPGTKIEDAYHVAERIRKNIESK--- 575

Query: 210 ISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            SS   + IT S G+A   +   +   II +AD ALY +K++GRNR    +D+ NN  
Sbjct: 576 -SSFRDMPITASLGMANWPNDGVMKEEIIAKADAALYRSKETGRNRTSLPADLNNNPT 632


>gi|148979980|ref|ZP_01815820.1| response regulator [Vibrionales bacterium SWAT-3]
 gi|145961503|gb|EDK26806.1| response regulator [Vibrionales bacterium SWAT-3]
          Length = 413

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 78/151 (51%), Gaps = 5/151 (3%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+GL N     +      E+ +I   DID+FK++ND +GH  GD V+  +   +   F
Sbjct: 258 DALTGLWNRRYLFNQTCKGCEERNIAMMDIDFFKKVNDTYGHDGGDAVLIEVGQIIKQHF 317

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
              + V R GGEEF   + G  EQ    L + +R  IE+ Q+   S   I +T+S G+ +
Sbjct: 318 KDDLPV-RFGGEEFCIQSCGPFEQFVEALES-MRDAIESHQVEHDS-QIIKVTMSIGVTD 374

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                 +   I  AD+ LY AK+ GRN++VC
Sbjct: 375 LVG--SLDEQIKAADELLYTAKEQGRNQLVC 403


>gi|91226108|ref|ZP_01260998.1| GGDEF family protein [Vibrio alginolyticus 12G01]
 gi|91189342|gb|EAS75620.1| GGDEF family protein [Vibrio alginolyticus 12G01]
          Length = 386

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 22/173 (12%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           QL+  D L+ + +  A    L    +K +I   D+D+FK+ ND +GH  GD V+  ++ +
Sbjct: 210 QLAFTDSLTLIPSRRALDLDLKHMGKKFTIAMLDVDHFKKFNDTYGHDTGDDVLKMVASR 269

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI------------- 208
           L    G    V R GGEEF     G    E      + RK I   ++             
Sbjct: 270 LTKTPGGAK-VYRFGGEEFTIVFKGKYTDECKNFLEEARKSIAEYEMILRDEESRPENHK 328

Query: 209 --------NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
                   N S   S+ +T S G+A+  + +    +I  AD+ALY AKK+GRN
Sbjct: 329 QGQKRRGSNSSKRKSVFVTASFGVADSRNGQAPLDVIKSADEALYKAKKAGRN 381


>gi|189346760|ref|YP_001943289.1| diguanylate cyclase [Chlorobium limicola DSM 245]
 gi|189340907|gb|ACD90310.1| diguanylate cyclase [Chlorobium limicola DSM 245]
          Length = 419

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 9/183 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           K++     ++ +L   D  + L N+  F       I      ++K+S+   DID+FK  N
Sbjct: 233 KDIEAKNKKLDELYIRDEKTNLYNYRHFKEHLIMEIERSKRLDDKVSMAMIDIDHFKLYN 292

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+V+  L+  +     T     R GGEEFA     +    A  +++ LR II
Sbjct: 293 DENGHVAGDRVLEQLAGIIGNTCRTSDMPSRFGGEEFAVLFPRTGIDTAMQISDRLRMII 352

Query: 204 ENSQIN-ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
               ++     PS  +T+S GIA      +   T++  AD+ALY AK +GRNRV  FS I
Sbjct: 353 SAEPVDHEKKQPSGRLTVSIGIATFPDDAQDWYTLVNNADRALYQAKSAGRNRVTAFSTI 412

Query: 262 ENN 264
           ++ 
Sbjct: 413 KSK 415


>gi|170759489|ref|YP_001788676.1| putative diguanylate cyclase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406478|gb|ACA54889.1| putative diguanylate cyclase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 437

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 92/173 (53%), Gaps = 12/173 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQIND 144
           E + + N+I +LS I  L+  LN  +F+  L         N++ +SI+F D+DYFK  ND
Sbjct: 256 ENYSANNKIKKLS-ICSLTYALNRGSFMEKLKDEFDDSKKNKRHISIIFIDVDYFKAYND 314

Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           N+GH  GDKV+  +   ++ V       VGR GG+EF          E  ++A ++ K I
Sbjct: 315 NYGHIEGDKVLMKIGKSIINVAKKYSGVVGRYGGDEFIVLLNKVETSELKVIATEISKEI 374

Query: 204 ENSQINIS-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
              +I    S  S + T+S G+A    K  E I  +I  AD+ALY +K++GR+
Sbjct: 375 NKLKIEREYSHISKYQTVSIGVASIIPKEEEKIEDLINYADKALYKSKENGRD 427


>gi|153833679|ref|ZP_01986346.1| ggdef family protein [Vibrio harveyi HY01]
 gi|148869958|gb|EDL68918.1| ggdef family protein [Vibrio harveyi HY01]
          Length = 374

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 94/188 (50%), Gaps = 9/188 (4%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEK 128
           + ++L+L        K+L  +  ++  LS  D L+ L N  + I +L        + +  
Sbjct: 178 LKLNLVLEEKVDERTKQLSNANKQLEALSLTDSLTQLPNRRSAIKTLKKLWKDEDAKDLP 237

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L  +  D DYFKQ+ND  GH  GD V+  L+  L   F +   V RLGG+EF      + 
Sbjct: 238 LVCIMIDADYFKQVNDTCGHEAGDLVLTELAQALKHYFRSDDIVCRLGGDEFFVICPDTG 297

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247
            +    +A  +RK + +  +  S  P    +IS G+AER    E  + +I  AD+ +Y+A
Sbjct: 298 LEGGLHVAEAVRKQVSHMLVPTSFEP-WRGSISVGVAERRDNMETYTDLIRVADEGVYLA 356

Query: 248 KKSGRNRV 255
           K++G+NRV
Sbjct: 357 KQNGKNRV 364


>gi|83942939|ref|ZP_00955399.1| diguanylate cyclase, putative/response regulator [Sulfitobacter sp.
           EE-36]
 gi|83845947|gb|EAP83824.1| diguanylate cyclase, putative/response regulator [Sulfitobacter sp.
           EE-36]
          Length = 471

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 26/172 (15%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N    +S +     +       L+++  DID+FK++ND FGH  GD V+   +
Sbjct: 296 DPLTGIYNRRHALSEVARLAVRTRRKGIPLAVMLADIDHFKRVNDAFGHASGDAVLVETA 355

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHI 218
            +L           R+GGEEF     G +E EA  +A  + +    +   I +S   IH 
Sbjct: 356 RRLKSCLRPLDVAARIGGEEFLLILPGITEAEATRMAKRICEAYRTTPFTIPASAQPIHA 415

Query: 219 TISAGIAERCHKEP---------------ISTIIYRADQALYVAKKSGRNRV 255
           TIS G+   C  +P                + +I RADQALY AK  GR+RV
Sbjct: 416 TISIGL---CTAQPETGDAFPAPLDASAIAAELIDRADQALYSAKHRGRDRV 464


>gi|315297171|gb|EFU56451.1| diguanylate cyclase domain protein [Escherichia coli MS 16-3]
          Length = 430

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLALAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|225848925|ref|YP_002729089.1| signal transduction response regulator [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643532|gb|ACN98582.1| signal transduction response regulator [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 442

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 76/164 (46%), Gaps = 9/164 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  L+ +D L+ + N    +  L         +N  LSI   DID FK IND+FGH VGD
Sbjct: 22  IYNLATLDFLTKIPNRRKLMMDLEKEILRAKRFNRPLSIALIDIDDFKIINDSFGHDVGD 81

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +  + D L         VGR GGEEF      +S       A  +RK IE S   I +
Sbjct: 82  LALLHVVDILKDSIRLTDIVGRYGGEEFLVIMPETSLDGTLKAAEKIRKNIEQSSF-IIN 140

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
              I  T+S GIA    H      ++  AD  LY AKK G+NRV
Sbjct: 141 DTKIPFTVSIGIASTELHGYDSQLLLKAADLGLYKAKKEGKNRV 184


>gi|152982630|ref|YP_001355220.1| hypothetical protein mma_3530 [Janthinobacterium sp. Marseille]
 gi|151282707|gb|ABR91117.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 356

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 87/193 (45%), Gaps = 32/193 (16%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKLS--------------------- 130
           ++ +Y  +   S  D L+GLLN   F        N K S                     
Sbjct: 144 VYRNYQSLLDYSERDSLTGLLNRKTFDEKFARMVNAKPSESVARDDEGREERRHHADVKS 203

Query: 131 --IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
             +   DID+FK++ND FGH  GD+V+  +++ L   F     V R GGEEF      ++
Sbjct: 204 QWLAVIDIDHFKRVNDQFGHLYGDEVLILVANVLRTSFRAQDRVFRFGGEEFVVLLRSAT 263

Query: 189 EQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVA 247
             +A ++    R  IE       S P I  IT+S G A    + P+  I+  ADQALY A
Sbjct: 264 LADAQMVFERFRTSIEQ-----HSFPQIGQITVSIGFASISQETPV-VILGHADQALYYA 317

Query: 248 KKSGRNRVVCFSD 260
           K  GRN+ VC+ D
Sbjct: 318 KDHGRNQ-VCYYD 329


>gi|90420494|ref|ZP_01228401.1| conserved hypothetical protein with GGDEF domain [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335222|gb|EAS48975.1| conserved hypothetical protein with GGDEF domain [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 280

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 11/169 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVG 151
           + + +  D L+G+LN   F       +++LG +    L ++  D D+FK+IND  GHP G
Sbjct: 85  LQRAATTDRLTGVLNRPGFDTIIRRHMAALGDHQYAGLMLLIIDADHFKRINDRLGHPTG 144

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DK +  ++  L         VGRLGGEEFA +   +S ++   +A  LR  I   ++++S
Sbjct: 145 DKALKAIAGALKRSMRGSDAVGRLGGEEFAISFPCTSLEQGKAVAERLRLSI--GKLSVS 202

Query: 212 SGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            G  S  +++S G A     +    +   AD  LY +K++GRNR    S
Sbjct: 203 DGKQSARLSVSIGGAFYTTPQLFDRVYGAADVNLYHSKRTGRNRTTITS 251


>gi|83643082|ref|YP_431517.1| GGDEF domain-containing protein [Hahella chejuensis KCTC 2396]
 gi|83631125|gb|ABC27092.1| FOG: GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 307

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 10/171 (5%)

Query: 99  RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +L   D ++ +LN        +  +     Y E+ S +  D D+F  INDNFG   G
Sbjct: 137 RVKELIMYDPVTKVLNWRFAEERCTQMVKHCRRYKEEFSFLVLDGDHFIWINDNFGPEAG 196

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+ + FL++ +  V      +GR GGE+F      +    A ++A  +R++ E  +    
Sbjct: 197 DEALIFLAETIKNVIREVDILGRYGGEKFVIGLPATDLNGAVVVAERIRQLFEQCK---P 253

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +   +  ++S G A+    E +   I RA  ALY A K GRNRV    + E
Sbjct: 254 TSYDVRYSVSIGCAQLIRNEDLHDTIKRATHALYRAIKGGRNRVAASKNHE 304


>gi|83310566|ref|YP_420830.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945407|dbj|BAE50271.1| Response regulator [Magnetospirillum magneticum AMB-1]
          Length = 634

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 13/171 (7%)

Query: 99  RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R S LS  D ++GL N           ++++      L+++  D+D+FK +ND +GH  G
Sbjct: 459 RESSLS--DPMTGLNNRRFLEEYVDTLVANVHRRKSALTVMMLDLDHFKMVNDTYGHDAG 516

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  LS  L         V R GGEEF    + +   EA  +A  +R ++E   + + 
Sbjct: 517 DAVLKALSKVLRQAVRASDLVIRFGGEEFLIVLVDTPSAEADQVAEKIRALVE--ALVVQ 574

Query: 212 SGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +G  +I  TIS G+++     +     +  AD ALY AK++GRNRVV F++
Sbjct: 575 TGTVTIRKTISIGLSDFPTDSDTFWQAVKFADVALYQAKENGRNRVVRFNE 625


>gi|330969610|gb|EGH69676.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 298

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 113/233 (48%), Gaps = 21/233 (9%)

Query: 31  FSIFFSIFIATVIFIANIFL--FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG- 87
            S+FF  FI  +   A I+L  +   LT   G++++ +      +  I+ +LL G ++  
Sbjct: 45  MSVFFVKFIDYIAAAALIWLIMWQTDLTAV-GVDHVPL----FYVFLISSTLLGGCLNAT 99

Query: 88  --SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVF--FDIDYFK 140
             S++ +   + +R  +LS  D L+   N  A ++ L +     +K S+ F   D+D+FK
Sbjct: 100 FLSLIMQTMAARDRYQELSETDTLTHAPNRRALVAGLNTALASADKSSLWFAMLDLDHFK 159

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH VGD V+   +  L    G   F GRLGGEEF      ++  +A      L 
Sbjct: 160 SINDTHGHDVGDNVLISFATLLKSTKGLISF-GRLGGEEFGVILSAANATDAIHALEGLL 218

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            + ++ +        +  + SAG+A     E I+ ++  AD+ LY AK+SGR 
Sbjct: 219 MLAQHDE-----AAQVPYSFSAGVASLSRVETINDLLKEADENLYYAKRSGRT 266


>gi|313106069|ref|ZP_07792327.1| hypothetical protein PA39016_000160006 [Pseudomonas aeruginosa
           39016]
 gi|310878829|gb|EFQ37423.1| hypothetical protein PA39016_000160006 [Pseudomonas aeruginosa
           39016]
          Length = 398

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 92/174 (52%), Gaps = 10/174 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL     ++  L+  D L+GL N   F       ++ +    + LS++  D+D+FK IN
Sbjct: 213 QELEEKNRQLEYLAGHDPLTGLFNRREFDQLVLMELARIARQPQPLSLLMVDLDHFKYIN 272

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHP GD+VI   ++ L     +   V RLGGEEF      ++EQ+A  LA  LR+ +
Sbjct: 273 DRYGHPFGDEVIRHAANLLRGNTRSSDSVARLGGEEFLLLLPDTAEQQARSLAEKLRERL 332

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           E + +    G  + +T S G+A  +   +     +   ADQALY AK SGRNRV
Sbjct: 333 EGTPLATQDG-VLCLTASFGVASLDGGGQASYEQLYSAADQALYRAKSSGRNRV 385


>gi|311105518|ref|YP_003978371.1| diguanylate cyclase [Achromobacter xylosoxidans A8]
 gi|310760207|gb|ADP15656.1| diguanylate cyclase, GGDEF domain protein 11 [Achromobacter
           xylosoxidans A8]
          Length = 403

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 70/130 (53%), Gaps = 5/130 (3%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV--VVFGTPMFVGRLGGEEFAAAAL 185
           KL+++  DID+FK IND +GH  GD  +   S Q+V   V G+  F GRLGGEEF     
Sbjct: 251 KLAVLVLDIDHFKSINDRYGHASGDAALRHFS-QVVQRAVRGSDRF-GRLGGEEFVLLMY 308

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
                 A + A  +   + ++  ++  G  + +T S G+A     +    I+ RAD ALY
Sbjct: 309 DCDPARALVQAQRVCDALRDTPFHL-QGREVRMTTSGGLASYQSGDSADGILARADDALY 367

Query: 246 VAKKSGRNRV 255
            AK+ GR+RV
Sbjct: 368 RAKEHGRDRV 377


>gi|317153199|ref|YP_004121247.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
 gi|316943450|gb|ADU62501.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
          Length = 277

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 20/181 (11%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           L++   +  R++  +  D L+GL N  AF  +L    E+       LS+  FD+D FK+I
Sbjct: 73  LRQFQATLERLAYQTDHDPLTGLANRRAFDRTLEIEVERSRRAKTPLSLALFDLDDFKRI 132

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GHP GD+V+   + ++           R GGEEFA    GS   +A  L    R +
Sbjct: 133 NDTYGHPKGDEVLIAFARRVSETTRRYDLAARFGGEEFALVMAGSGVVKAQRLLE--RLL 190

Query: 203 IENSQINISSGPSIH---ITISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254
            E  Q+  ++    H   +T S G+   C K     EP+  ++  AD ALY AK +G+++
Sbjct: 191 SEFRQMEFTAPDGSHTFSVTCSVGLT--CFKGTVDLEPVE-LVQMADDALYEAKNAGKDQ 247

Query: 255 V 255
           +
Sbjct: 248 I 248


>gi|302879164|ref|YP_003847728.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
 gi|302581953|gb|ADL55964.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
          Length = 935

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 86/174 (49%), Gaps = 19/174 (10%)

Query: 99  RISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           RI+ L+  D L+GL N          AF SS    N K++++F D+DYFK IND+ GH +
Sbjct: 505 RINYLANYDVLTGLPNRYLLSDRIEQAF-SSAQRNNFKVAVLFIDLDYFKNINDSLGHDI 563

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIEN--- 205
           GD ++  ++ +L         + RLGG+EF A  + L SSE+   +    +  + E    
Sbjct: 564 GDALLKLVAARLKTCLRRSDTIARLGGDEFVALLSELDSSEEVIFVAEKMIESLTEKFTL 623

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +  +S  PSI I I     E   +     ++  AD A+Y AK  GRN    +S
Sbjct: 624 GEYQLSITPSIGICIYPDDGETSVE-----LLRNADLAMYQAKDDGRNNFKFYS 672


>gi|239928916|ref|ZP_04685869.1| hypothetical protein SghaA1_11897 [Streptomyces ghanaensis ATCC
           14672]
 gi|291437243|ref|ZP_06576633.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
 gi|291340138|gb|EFE67094.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
          Length = 204

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 22/188 (11%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNE 127
           +L I S  + L  G  +  +++ L          +R D L+GL     F         + 
Sbjct: 5   ALAIASAVLGLAWGAHTVWMVRRL--------HRARRDPLTGLWTREGFTRRARRLLRDG 56

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-- 185
           +  +V  D+D FKQ+ND FGH  GD ++A  + +L    G     GRLGG+EFAA  +  
Sbjct: 57  RAVVVLADVDRFKQVNDTFGHAAGDALLAATATRLAHGVGRGGVAGRLGGDEFAAVFVDR 116

Query: 186 -GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQ 242
            G++ +    LA+ L + ++       S P +H T+S G   R     E +S ++ RAD+
Sbjct: 117 DGTALERLDTLAHILARPVD-------SLPEVHTTVSLGWVRRADHADEDLSGLLRRADE 169

Query: 243 ALYVAKKS 250
           A+Y AK+S
Sbjct: 170 AMYAAKRS 177


>gi|192289266|ref|YP_001989871.1| diguanylate cyclase with PAS/PAC sensor [Rhodopseudomonas palustris
           TIE-1]
 gi|192283015|gb|ACE99395.1| diguanylate cyclase with PAS/PAC sensor [Rhodopseudomonas palustris
           TIE-1]
          Length = 313

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 86/175 (49%), Gaps = 20/175 (11%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----------IVFFDIDYFKQINDNFGHP 149
           + Q +  D L+GL N + F      Y E +S          +V  D+D FK++ND  GH 
Sbjct: 138 LRQQAETDPLTGLANRARFQER---YREVVSDRLHHGFASALVLIDLDGFKELNDTLGHL 194

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQ 207
            GD  +  ++ +L   F +   + RLGG+EFA       S+E+ A +L    R I+  S+
Sbjct: 195 AGDACLCEVAQRLRRAFNSAGLISRLGGDEFAIILRTPTSAERIADVL---RRTIVMLSR 251

Query: 208 INISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
               +G  I ++ S G A   R H+  I+ +   AD ALY AK +GRNRV    D
Sbjct: 252 PLFWNGHRIKVSASIGAALIGRPHQRRIADLFAEADLALYQAKAAGRNRVSLIGD 306


>gi|254285887|ref|ZP_04960849.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|150424069|gb|EDN16008.1| GGDEF family protein [Vibrio cholerae AM-19226]
          Length = 312

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 8/167 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFI--SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           IS     + S+ID L+ L N   F   S   +    L ++ FDID+FKQIND +GHP GD
Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPETLLGLIIFDIDHFKQINDTYGHPAGD 205

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L           R GGEEF              LA ++R  +E+  + +  
Sbjct: 206 YVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANVIGLAENIRDYVESHTL-MWQ 264

Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  I +T+SAG    A   H      +++ ADQAL  AK+ GRNRV+
Sbjct: 265 GQQIALTLSAGCTMGAMMSHN--WDNLLHTADQALLSAKRLGRNRVI 309


>gi|119487299|ref|ZP_01621050.1| hypothetical protein L8106_21282 [Lyngbya sp. PCC 8106]
 gi|119455854|gb|EAW36989.1| hypothetical protein L8106_21282 [Lyngbya sp. PCC 8106]
          Length = 965

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 49/130 (37%), Positives = 72/130 (55%), Gaps = 4/130 (3%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L  + FDID+FK IND +GH  GD  +   S+ +     +    GRLGGEEF A     S
Sbjct: 832 LLCMMFDIDHFKLINDQYGHKAGDIALIAFSEIVSKNLRSNDIFGRLGGEEFLAVVPEIS 891

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALY 245
            +    LA  +R  +E + I + +   I +T+S GI+   + + ++T   +I  +D+ALY
Sbjct: 892 LEAGKKLAERIRLEVEKTPITVGAD-CITMTVSIGISMYKNNKNLATFDELIELSDKALY 950

Query: 246 VAKKSGRNRV 255
            AK SGRNRV
Sbjct: 951 TAKNSGRNRV 960


>gi|87199456|ref|YP_496713.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87135137|gb|ABD25879.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 896

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 62/178 (34%), Positives = 84/178 (47%), Gaps = 11/178 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           SG+ L E   S    S+L+  D L+GL N      +L          +   ++   D+D 
Sbjct: 336 SGTDLTEKRRSQEHASRLAHFDSLTGLSNRFRMSQTLEKILLAPQVQHRACAVFLLDLDR 395

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND  GHP GD ++  ++ +L  V G    VGRLGG+EF     G  E+    L + 
Sbjct: 396 FKQVNDTLGHPAGDALLKQVAQRLERVVGKIGRVGRLGGDEFEVILPGKMER--GQLGHM 453

Query: 199 LRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNR 254
             +IIE+ SQ     G  + I  S GIA        S  + R AD ALY AK  GR R
Sbjct: 454 AGRIIESLSQPYSIEGSRVMIGASVGIALAPDDGVTSEALIRNADLALYAAKDGGRGR 511


>gi|319783753|ref|YP_004143229.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169641|gb|ADV13179.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 383

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 103/199 (51%), Gaps = 15/199 (7%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-----S 120
            E LSL+I+  +++ + G +S ++ +     ++R + L+  D L+GLLN  A       +
Sbjct: 186 AEELSLIIVIASMTGI-GALSLALNQGRLARHHRHNALT--DPLTGLLNRRALFDLHGDA 242

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            +G++    ++V FD+D FK IND FGH  GD+V+   + +L           R+GGEEF
Sbjct: 243 PVGAFT---AVVVFDLDNFKAINDEFGHAAGDEVLRVFARELASNRRPADVAARMGGEEF 299

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIY 238
           A     +  +     A  +R      +I   +G S+  T+SAG A    KE +    ++ 
Sbjct: 300 ALVLKRTLPETVEATAEAIRAAFAAHRIETETG-SLICTVSAGFAFGT-KEGLGFDKVLN 357

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ALY AK+ GRNRV  
Sbjct: 358 AADKALYDAKRGGRNRVTA 376


>gi|262402983|ref|ZP_06079543.1| hypothetical protein VOA_000964 [Vibrio sp. RC586]
 gi|262350482|gb|EEY99615.1| hypothetical protein VOA_000964 [Vibrio sp. RC586]
          Length = 314

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 19/174 (10%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +++  D LS L N   F   L         +N+ L++   DID FK+ ND+FGH  GD
Sbjct: 135 LDKMAHTDSLSNLANRLTFDEQLDVEFRRSRRHNDPLTVALIDIDEFKKFNDHFGHIAGD 194

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           + I  ++  L  +   P     R GGEEFA     + E+ A  + N+L K +E  Q+ I+
Sbjct: 195 ECIRKIAHALRSITKRPADLAARYGGEEFALILPSTEEEGAKSMVNELIKAVE--QLEIA 252

Query: 212 SGPSIH---ITISAG----IAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256
             P      +T+S G      E+   E +    +   AD+ALY +K +GRN+  
Sbjct: 253 HSPEAMNQCVTVSVGYTVLYPEQVDFEQMKAVDVAQTADKALYTSKHNGRNQAT 306


>gi|260434152|ref|ZP_05788123.1| response regulator receiver modulated diguanylate cyclase
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417980|gb|EEX11239.1| response regulator receiver modulated diguanylate cyclase
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 467

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 16/165 (9%)

Query: 106 IDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+GL N    +S+L           +  +I+  D+D+FK IND +GH VGD+V+   
Sbjct: 297 IDPLTGLNNRRYALSALDRMMTRATRKGQSFAIMLADLDHFKSINDRYGHSVGDQVLVEA 356

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IH 217
           + ++   FG   F+ R+GGEEF  A   +  + A   A  + +++  S   + + P+ + 
Sbjct: 357 AKRMRRAFGNEGFLARIGGEEFLFALPDADHRTARAKAERICQLMAASPFVMPTIPTRLT 416

Query: 218 ITISAGIAE-----RCHKEPIST---IIYRADQALYVAKKSGRNR 254
           +T+S G+       +C  E   T   ++  AD+ALY AKK+GRN+
Sbjct: 417 VTVSVGLKLCEPPFQCLGEDGCTAPELVNCADRALYAAKKAGRNQ 461


>gi|237653888|ref|YP_002890202.1| response regulator receiver modulated diguanylate cyclase [Thauera
           sp. MZ1T]
 gi|237625135|gb|ACR01825.1| response regulator receiver modulated diguanylate cyclase [Thauera
           sp. MZ1T]
          Length = 642

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 9/170 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           EL IS  R+ + +  D L+GL N    I ++ +       +    S++  D+D FK IND
Sbjct: 462 ELSISNRRLQEAALTDPLTGLPNRRRAIEAMEAEWATATRHGRAFSVMIVDLDGFKTIND 521

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD  +   +  L         + R GG+EF      +  + A ++A  LR  ++
Sbjct: 522 THGHDVGDMALRQAAATLRGALRAQDLICRTGGDEFLVLCPDTDLKAAMLVAERLRVAVQ 581

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
            S +  + GP I +T S G+A R      +  +I  AD ++Y AK+ GRN
Sbjct: 582 ASPVE-TGGPQIFLTASVGVAMRVPAMGSVDALIKCADDSVYRAKQRGRN 630


>gi|222109892|ref|YP_002552156.1| diguanylate cyclase [Acidovorax ebreus TPSY]
 gi|221729336|gb|ACM32156.1| diguanylate cyclase [Acidovorax ebreus TPSY]
          Length = 388

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 79/164 (48%), Gaps = 10/164 (6%)

Query: 107 DCLSGLLNHSAFIS--SLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N  A +    L     +     L     D+D+FK++ND+ GH +GD V+   +
Sbjct: 211 DELTGLYNRRAMVELIQLECRRRRRGQGALLFAMIDVDHFKRVNDHHGHAMGDHVLRVFA 270

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           D L         + R GG+EF         + A  L    R+ I    +  ++ P + ++
Sbjct: 271 DALRANVRETDVLARWGGDEFLLLLSDIEPRSAQTLLERTREAIAALPVP-NAPPDLRLS 329

Query: 220 ISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +SAG+A    H  P  T+  RADQALY AK  GRNRV    +++
Sbjct: 330 MSAGLALHLPHSSPQETL-ERADQALYAAKDQGRNRVALAPELQ 372


>gi|218441976|ref|YP_002380305.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7424]
 gi|218174704|gb|ACK73437.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7424]
          Length = 465

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 13/168 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ QL+R+D L+G+ N   F  +L           + LS++  DIDYFK  ND +GH  G
Sbjct: 278 KLHQLARLDGLTGVANRRYFEETLAKEWKRGIRDKQPLSLILCDIDYFKIYNDTYGHLKG 337

Query: 152 DKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-- 208
           D+ +  ++  +   V  +   V R GGEEF      +  Q A  +A  ++K +   +I  
Sbjct: 338 DECLIRVAKAINRAVKRSTDLVARYGGEEFGIILTNTERQGAIAIAQSIQKAVNQLKIPH 397

Query: 209 -NISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRN 253
            N       +I +S G+A    ++ +S   ++  AD+ALY AKK GRN
Sbjct: 398 PNPREKNHHYIAMSLGVASLIPQKKLSPKILVASADKALYEAKKQGRN 445


>gi|119775582|ref|YP_928322.1| sensory box protein [Shewanella amazonensis SB2B]
 gi|119768082|gb|ABM00653.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella amazonensis SB2B]
          Length = 1036

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 81/150 (54%), Gaps = 18/150 (12%)

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           IS     N + +++F D+D+FK++ND  GH +GDK++   +D++         V RLGG+
Sbjct: 603 ISLASRQNVRFALLFLDLDFFKEVNDTLGHDMGDKLLIECADRIKACIRDSDVVARLGGD 662

Query: 179 EFAAAA-----LGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEP 232
           EF         +G  E+ A   +N L+ I E  Q+    GP S +I++S GI      E 
Sbjct: 663 EFTVLIRDIHDVGGVERAA---SNILKAIAEPFQL----GPDSAYISVSIGIT--LFPED 713

Query: 233 IST---IIYRADQALYVAKKSGRNRVVCFS 259
            ST   ++  ADQA+Y AK+ GRNR   F+
Sbjct: 714 ASTREALLKNADQAMYAAKEQGRNRFNYFT 743


>gi|332982919|ref|YP_004464360.1| diguanylate cyclase [Mahella australiensis 50-1 BON]
 gi|332700597|gb|AEE97538.1| diguanylate cyclase [Mahella australiensis 50-1 BON]
          Length = 560

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 87/184 (47%), Gaps = 18/184 (9%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           EL    + + +LS  D L+GL N     + L         Y + LS +  D+D+FK +ND
Sbjct: 378 ELIEKNSLLERLSITDALTGLYNRGYMTNRLAGDLSYSLRYGQPLSCLMMDLDFFKAVND 437

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD V+  L+  + +       V R GGEEF      +    A +L   +R+ + 
Sbjct: 438 MYGHQAGDLVLKQLAQIISMNVRKSDVVIRYGGEEFLVICPNTDGNGAIMLGERIRQAVR 497

Query: 205 NSQINISS-GPSIHITISAGIAERC---HK-----EPISTIIYRADQALYVAKKSGRNRV 255
               +IS+ G  I +TIS G A  C   H      +    II +AD ALY+AK  GR+ V
Sbjct: 498 EHDFDISNGGKRIRMTISIGAA--CIEPHDIKDIVQAERDIIAQADSALYMAKGDGRDNV 555

Query: 256 VCFS 259
             F+
Sbjct: 556 KLFA 559


>gi|300957940|ref|ZP_07170109.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1]
 gi|300315379|gb|EFJ65163.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1]
          Length = 357

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 12/166 (7%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL II I   LL G++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +N   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAE 226
               G+   E+AI A  + ++ E  + + + + P + + IS G+A 
Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVAP 337


>gi|281178532|dbj|BAI54862.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 430

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|242238666|ref|YP_002986847.1| diguanylate cyclase [Dickeya dadantii Ech703]
 gi|242130723|gb|ACS85025.1| diguanylate cyclase [Dickeya dadantii Ech703]
          Length = 519

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 106/221 (47%), Gaps = 29/221 (13%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFIS----------------YNRISQ-LSRID 107
           L+ENL  +++++ +   + ++   +LK++ ++                 NR+ Q L+ +D
Sbjct: 297 LMENLPAMLLNVFVLFPILFMGALVLKQIRLTVRNKDVLTRLHQEETDKNRVLQKLALVD 356

Query: 108 CLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+ L N   F S L    EK       LS++  D+D+FK  ND +GH  GD+ ++ +  
Sbjct: 357 PLTRLANRRRFDSYLEQSLEKMRDEGKVLSLIMMDVDFFKYFNDTYGHVRGDRCLSQIGS 416

Query: 161 QLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG--PSIH 217
            L+  V+ +     R GGEEFA      + ++A +L   + + I    I       P   
Sbjct: 417 VLLGRVWPSGALPARYGGEEFAVILPNVTGEQAELLGAQVVEAIRACAIPHQESLLPDHI 476

Query: 218 ITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVV 256
           +T+S G+       P  +  +   ADQALY+AKK GRN+ V
Sbjct: 477 VTVSVGVYSFSSANPCDVQRLKDGADQALYLAKKKGRNQCV 517


>gi|254225422|ref|ZP_04919033.1| GGDEF family protein [Vibrio cholerae V51]
 gi|125622056|gb|EAZ50379.1| GGDEF family protein [Vibrio cholerae V51]
          Length = 312

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 84/171 (49%), Gaps = 16/171 (9%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGH 148
           IS     + S+ID L+ L N   F +    ++E       L ++ FDID+FKQIND +GH
Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFT----WSEPIVPETLLGLIIFDIDHFKQINDTYGH 201

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           P GD V+  ++  L           R GGEEF              LA ++R  +E+  +
Sbjct: 202 PAGDYVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANVVGLAENIRGYVESHTL 261

Query: 209 NISSGPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  G  I +T+SAG    A   H      +++ ADQAL  AK+ GRNRV+
Sbjct: 262 -MWQGQQIALTLSAGCTMGAMMSHN--WDNLLHTADQALLSAKRLGRNRVI 309


>gi|82544203|ref|YP_408150.1| hypothetical protein SBO_1720 [Shigella boydii Sb227]
 gi|193062480|ref|ZP_03043574.1| sensory box-containing diguanylate cyclase [Escherichia coli E22]
 gi|209918586|ref|YP_002292670.1| hypothetical protein ECSE_1395 [Escherichia coli SE11]
 gi|300818938|ref|ZP_07099142.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
 gi|300904993|ref|ZP_07122811.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|301305843|ref|ZP_07211928.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|306813634|ref|ZP_07447815.1| hypothetical protein ECNC101_17017 [Escherichia coli NC101]
 gi|81245614|gb|ABB66322.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|192931602|gb|EDV84202.1| sensory box-containing diguanylate cyclase [Escherichia coli E22]
 gi|209911845|dbj|BAG76919.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|300403142|gb|EFJ86680.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|300528399|gb|EFK49461.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
 gi|300838933|gb|EFK66693.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|305852908|gb|EFM53353.1| hypothetical protein ECNC101_17017 [Escherichia coli NC101]
 gi|315254383|gb|EFU34351.1| diguanylate cyclase domain protein [Escherichia coli MS 85-1]
 gi|320199382|gb|EFW73973.1| hypothetical protein ECoL_03482 [Escherichia coli EC4100B]
 gi|323153513|gb|EFZ39766.1| sensory box protein [Escherichia coli EPECa14]
 gi|323179695|gb|EFZ65256.1| hypothetical protein ECOK1180_1440 [Escherichia coli 1180]
 gi|323187575|gb|EFZ72884.1| hypothetical protein ECRN5871_4400 [Escherichia coli RN587/1]
 gi|324021222|gb|EGB90441.1| diguanylate cyclase domain protein [Escherichia coli MS 117-3]
 gi|332094922|gb|EGI99962.1| hypothetical protein SB359474_1973 [Shigella boydii 3594-74]
          Length = 430

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|56419574|ref|YP_146892.1| hypothetical protein GK1039 [Geobacillus kaustophilus HTA426]
 gi|56379416|dbj|BAD75324.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 588

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 88/187 (47%), Gaps = 18/187 (9%)

Query: 85  ISGSILKELFISYNRISQLSR-------IDCLSGLLN-------HSAFISSLGSYNEKLS 130
           I+     ELF+   R+ +  R       ID L+G+ N       ++   S L  Y     
Sbjct: 251 ITTPAADELFVRVRRLIEKKRKIDDLVLIDELTGVYNRKYLPRVYARLRSDLERYGAPSC 310

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +   D+D+FKQ+ND FGH  GD V+  L+  L         V R GGEEF      +S+ 
Sbjct: 311 LALLDLDHFKQVNDRFGHLAGDAVLQKLAAFLRQHTRGVDTVVRFGGEEFVVWLAKTSKS 370

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAK 248
           EA  +   L++     +I  + G  +  T SAG+ E C +   P+   +  AD+ALY AK
Sbjct: 371 EARAVLERLQRQFAAEKIE-ADGALLSCTFSAGLVE-CDEPDRPLDYWLRLADKALYAAK 428

Query: 249 KSGRNRV 255
           + G NR+
Sbjct: 429 RGGGNRI 435


>gi|39933844|ref|NP_946120.1| diguanylate cyclase [Rhodopseudomonas palustris CGA009]
 gi|39647691|emb|CAE26211.1| putative diguanylate cyclase (GGDEF) with PAS/PAC domain
           [Rhodopseudomonas palustris CGA009]
          Length = 313

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 86/175 (49%), Gaps = 20/175 (11%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----------IVFFDIDYFKQINDNFGHP 149
           + Q +  D L+GL N + F      Y E +S          +V  D+D FK++ND  GH 
Sbjct: 138 LRQQAETDPLTGLANRARFQER---YREVVSDRLHHGFASALVLIDLDGFKELNDTLGHL 194

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQ 207
            GD  +  ++ +L   F +   + RLGG+EFA       S+E+ A +L    R I+  S+
Sbjct: 195 AGDACLCEVAQRLRRAFNSAGLISRLGGDEFAIILRTPTSAERIADVL---RRTIVMLSR 251

Query: 208 INISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
               +G  I ++ S G A   R H+  I+ +   AD ALY AK +GRNRV    D
Sbjct: 252 PLFWNGHRIKVSASIGAALIGRPHQRRIADLFAEADLALYQAKAAGRNRVSLIGD 306


>gi|330808444|ref|YP_004352906.1| diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376552|gb|AEA67902.1| Putative diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 794

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 95/206 (46%), Gaps = 14/206 (6%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           P  GL ++  E     +    + L  GYIS   + +L      +  LS  D L+G+ N  
Sbjct: 591 PLRGLRWVRGEATPEELPGGGV-LWHGYISD--ISDLKRVEEELRALSVTDALTGIRNRR 647

Query: 117 AFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            F   L S   +       L+++  DID+FK+IND  GH VGD+V+  +  ++       
Sbjct: 648 YFQDRLTSEMARVERGSGGLAVIMLDIDHFKRINDQHGHAVGDRVLQAVCQRVGQRLRRT 707

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               RLGGEEF      +  + A  LA +L + +  + I         +T S GIA    
Sbjct: 708 DVFCRLGGEEFVVLCPDTDSESAYTLALELWEGLRAAPIEGVG----FVTASFGIATWRI 763

Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255
            E    ++ RAD  +Y AK++GR+RV
Sbjct: 764 GEGADALLLRADSGVYAAKQAGRDRV 789


>gi|269104840|ref|ZP_06157536.1| hypothetical protein VDA_000997 [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161480|gb|EEZ39977.1| hypothetical protein VDA_000997 [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 719

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 13/182 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL     R++ LSR D L+ L N           I+      + L+ +  DID++K  N
Sbjct: 530 QELEAVNQRLNTLSRYDALTQLFNRYELDTIAPNLINEAQKQQKSLTCLMIDIDFYKTFN 589

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D++GH  GDKV+  ++  +   F     F  R GG+EF   A   S+++       L++ 
Sbjct: 590 DHYGHQQGDKVLRLVAKFIHQAFSEQQDFAFRYGGDEFLLLAFNQSQEQIQTKVEQLQQY 649

Query: 203 IENSQINIS-SGPSIHITISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +E   I    S  S  +T+S G      +      + ++I++ DQALY AK+  RNR V 
Sbjct: 650 LEQENIEHHYSQCSERLTLSIGSYTWQPDSFDDLTVESLIHQTDQALYFAKQKHRNRYVT 709

Query: 258 FS 259
           + 
Sbjct: 710 YQ 711


>gi|255307261|ref|ZP_05351432.1| putative signaling protein [Clostridium difficile ATCC 43255]
          Length = 391

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 110/245 (44%), Gaps = 30/245 (12%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK-ELFIS 96
           F  +VI     FLF     P  G++ I     S ++ +  I+ L  ++S  + +  +F  
Sbjct: 147 FGESVIVFGGCFLFLNLFLP--GIQTIPGNEFSNIVNTFFITSLAIFVSTMLYRNRVFTY 204

Query: 97  YNRI---SQLSRIDCLSGLLNHSAFISSLGSYN-------------------EKLSIVFF 134
           Y+++    Q   I  ++ LLN       L   N                   E ++ +  
Sbjct: 205 YDKLLISQQYEEISHINNLLNDKVMTDDLTKMNNRRYLEDILQKKLISHANQEPITGMMI 264

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEA 192
           DIDYFKQ NDN+GH  GD  +  ++ ++++ F +       R GGEEF       +E +A
Sbjct: 265 DIDYFKQFNDNYGHQKGDYCLQNIA-KVILDFTSSENEHAIRYGGEEFFICIFNCNEADA 323

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKS 250
            + +  LRKIIE+        P   +T+S G+  +   + I+    I   D+ALY AK+ 
Sbjct: 324 KLKSECLRKIIESCNFERDDVPLKCVTVSIGVYTKKIGKTITLNEFISNCDKALYTAKEQ 383

Query: 251 GRNRV 255
           GRN V
Sbjct: 384 GRNCV 388


>gi|189403875|ref|ZP_02785789.2| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4501]
 gi|189368709|gb|EDU87125.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4501]
 gi|320659635|gb|EFX27198.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O55:H7
           str. USDA 5905]
          Length = 476

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 309 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 368

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +         + R+GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 369 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 428

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 429 SIGAVVTQGNALNPNEIYRLADNALYEAKETGRNKVV 465


>gi|301017564|ref|ZP_07182238.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
 gi|300400058|gb|EFJ83596.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
          Length = 430

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCTLA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|237731698|ref|ZP_04562179.1| RNase II stability modulator [Citrobacter sp. 30_2]
 gi|226907237|gb|EEH93155.1| RNase II stability modulator [Citrobacter sp. 30_2]
          Length = 663

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 93/185 (50%), Gaps = 18/185 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           SG+ + E   +  R+  L+  D ++GL N +A        I + G  + ++ IV+ D+D 
Sbjct: 219 SGTDITEERRAQERLRMLANTDSITGLPNRNAIHELISDAIENAG--DTQVGIVYLDLDN 276

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAI 194
           FK++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S    E  A+ 
Sbjct: 277 FKKVNDAYGHMFGDQLLQSVSLAILSCLDDNQLLARFGGDEFIVLATETSQSTLEATASR 336

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +   LR+      I + +G SI I+++    + C      ++I  AD A+Y AK+ GR +
Sbjct: 337 ILTRLRQPFRIGLIEVYTGCSIGISLAPQHGQDCE-----SVIRNADTAMYTAKEGGRGQ 391

Query: 255 VVCFS 259
              FS
Sbjct: 392 FCVFS 396


>gi|226950798|ref|YP_002805889.1| putative diguanylate cyclase [Clostridium botulinum A2 str. Kyoto]
 gi|226842978|gb|ACO85644.1| putative diguanylate cyclase [Clostridium botulinum A2 str. Kyoto]
          Length = 437

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 91/173 (52%), Gaps = 12/173 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQIND 144
           E + + N+I +LS I  L+  LN   F+  L         N++ +SIVF D+DYFK  ND
Sbjct: 256 ENYSANNKIKKLS-ICSLTYALNRGNFMEKLKDEFDDSKKNKRHISIVFIDVDYFKAYND 314

Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           N+GH  GDKV+  +   ++ V       VGR GG+EF          E  ++A ++ K I
Sbjct: 315 NYGHIEGDKVLMKIGKSIINVAKKYSGVVGRYGGDEFIVLLNEVKTSELEVIAMEISKEI 374

Query: 204 ENSQINIS-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
              +I    S  S + T+S G+A    K  E I  +I  AD+ALY +K++GRN
Sbjct: 375 NKLKIKREYSHISKYQTVSIGVASIIPKEEEKIEDLINYADKALYKSKENGRN 427


>gi|168215416|ref|ZP_02641041.1| GGDEF domain protein [Clostridium perfringens NCTC 8239]
 gi|182382033|gb|EDT79512.1| GGDEF domain protein [Clostridium perfringens NCTC 8239]
          Length = 299

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 4/129 (3%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSS 188
           +++  DID FK++ND  GH VGDK++   +  L   +     ++GR GGEEF      ++
Sbjct: 172 TVIMADIDSFKKVNDTCGHLVGDKILRDFAKALNNNIRENSDWIGRYGGEEFIIVLNNTN 231

Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVA 247
            +    +A  LRKIIE  +++   G  S+ IT S G+ E   KE     I  AD+ LY+A
Sbjct: 232 LKNGVKVAEKLRKIIE--KMSFDYGDLSLKITSSFGVCEVSEKEDPFDTIKNADEKLYMA 289

Query: 248 KKSGRNRVV 256
           K +GRN+ V
Sbjct: 290 KMTGRNKTV 298


>gi|148258166|ref|YP_001242751.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1]
 gi|146410339|gb|ABQ38845.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1]
          Length = 502

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 21/175 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ QL+  D L+GL N   F  ++         ++  L ++  D D+FK  NDN GH  
Sbjct: 324 TRLEQLATTDPLTGLKNRRKFDETIEVEWRRALRHHAPLGLLMIDADHFKSYNDNHGHQA 383

Query: 151 GDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GD+V+  ++   V +  +    G    R GGEEFA    G+S+ +A  +A  +R     +
Sbjct: 384 GDQVLVGIA---VCISDSVRRAGDCAARYGGEEFAVLLPGTSDADALHVAETIR-----T 435

Query: 207 QINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++ I +G + + ++S G+A          + ++  AD+ALY+AK +GRNR V  +
Sbjct: 436 KVAIWAGEAGNTSVSIGVASITPSRDTDWTALMNAADRALYMAKAAGRNRCVAAT 490


>gi|91975244|ref|YP_567903.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91681700|gb|ABE38002.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB5]
          Length = 905

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 8/161 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +I+ L+  D L+ L N S F   L             ++++ DID FK IND  GHPVGD
Sbjct: 474 KIAYLAHYDSLTDLPNRSLFRQRLERKLEGAQRGASFALLYIDIDEFKSINDTLGHPVGD 533

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINIS 211
           +++  ++ +L    G   FV RLGG+EFA    G+ + + A  +A  + + I      + 
Sbjct: 534 ELLKQVAVRLQACVGEDEFVARLGGDEFAIVTNGAGDSDQATEMAERILQAIRTPYQCLG 593

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
              S   +I   IA R   + I  ++  AD A+Y AK  GR
Sbjct: 594 HRLSTDASIGIAIAPR-DGDDIDQLVKNADLAMYGAKAHGR 633


>gi|327189763|gb|EGE56907.1| sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 542

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 87/186 (46%), Gaps = 16/186 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           +I  +L  +  R+  L+  D L+GL N   F  +L        S    L+++  D+D FK
Sbjct: 360 AIEDQLQEANRRLQALAEQDALTGLANRRYFDEALLREHAHALSQRTNLALLIIDVDRFK 419

Query: 141 QINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GHP GD+ +  +   +   +        R GGEEFA    G+   EAA +A  +
Sbjct: 420 SFNDRYGHPSGDECLKRIGGAIKDTIRRAGDVAARYGGEEFAVLLPGADGSEAASVAELI 479

Query: 200 RKIIENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           R  + +  I   + P+   TIS G+        C  E    ++  AD+ALY AK+ GRN 
Sbjct: 480 RLAVLHLGIEHEASPNGIATISVGVTGLTGDSSCGPE---ALVREADRALYRAKERGRNT 536

Query: 255 VVCFSD 260
           VV   D
Sbjct: 537 VVIAHD 542


>gi|325920711|ref|ZP_08182617.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
           protein [Xanthomonas gardneri ATCC 19865]
 gi|325548763|gb|EGD19711.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
           protein [Xanthomonas gardneri ATCC 19865]
          Length = 804

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 9/171 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
           + +S  +R D L+GL+N       L    E         ++ F D+D+FK +ND FGH V
Sbjct: 366 DEVSFHARHDALTGLINRHEIERRLLRLIEPPQSPQLCHALCFVDLDHFKLVNDTFGHAV 425

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDK +   +D + +      ++GRLGG+EFA     +   +A  L   +  ++     + 
Sbjct: 426 GDKFLCHFADVITMQLRPGDWLGRLGGDEFAILLANTDLLQAQALLTHMHGVLGQPWSH- 484

Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             G  +  + S G+ E R     ++ ++  AD A Y AK+ GRNR+ CF +
Sbjct: 485 QGGKPLTPSCSFGVVEIRQGASDLNALMTAADLACYAAKEEGRNRIRCFDE 535


>gi|323964516|gb|EGB59991.1| GGDEF domain-containing protein [Escherichia coli M863]
 gi|327254035|gb|EGE65664.1| hypothetical protein ECSTEC7V_1466 [Escherichia coli STEC_7v]
          Length = 410

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVTKVSISGLPRF--T 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409


>gi|320653792|gb|EFX21866.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
          Length = 476

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 309 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 368

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +         + R+GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 369 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 428

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 429 SIGAVVTQGNALNPNEIYRLADNALYEAKETGRNKVV 465


>gi|300693354|ref|YP_003749327.1| modulator of rnase ii stability, signal transduction protein
           eal-ggdef domains (gmr) [Ralstonia solanacearum PSI07]
 gi|299075391|emb|CBJ34686.1| putative modulator of Rnase II stability, signal transduction
           protein eal-ggdef domains (gmr) [Ralstonia solanacearum
           PSI07]
          Length = 578

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 21/183 (11%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNE-KLSIVFFDIDYFKQINDNFGH 148
           +  RI  L+  D L+GLLN SA         +L   N  ++S++F D+D FK +ND  GH
Sbjct: 132 AQQRIRHLATHDTLTGLLNRSALEDRLEHALALARRNRSRVSVMFLDLDRFKNVNDTLGH 191

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-----ALGSSEQEAAILANDLRKII 203
             GD+++  ++ +L         V RLGG+EF        ++G+      ILA     I 
Sbjct: 192 QFGDQLLREVATRLQACAREADTVARLGGDEFVVMLESLDSMGTRRVAERILA----AIG 247

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF-SDI 261
               I+   G  + + +S GIA   H  +  +T++ +AD A+Y+AK+ GRN    F SD+
Sbjct: 248 APFHID---GQELFLGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNFQTFTSDL 304

Query: 262 ENN 264
           ++ 
Sbjct: 305 DDR 307


>gi|269958888|ref|YP_003328677.1| response regulator [Anaplasma centrale str. Israel]
 gi|269848719|gb|ACZ49363.1| response regulator [Anaplasma centrale str. Israel]
          Length = 456

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 9/162 (5%)

Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +++S  D L+G  N   F       ++      + LS++  D+D+FK++ND FGH VGD+
Sbjct: 291 AEMSITDPLTGCYNRRYFDMHFQNIVNEARDKGKDLSVMIIDVDHFKKVNDTFGHTVGDE 350

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  L  ++         + R GGEEF      +   +A   A  LR+ +     N S G
Sbjct: 351 LLQQLRKRIFDNIRISDLLARFGGEEFVVILPETGIDQAVTAAERLRQKVAEEPFNTSGG 410

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++  T+S G+AE    E     + RAD+ LY AK++ RN V
Sbjct: 411 -ALDKTVSIGVAEFRPSEEAKDFLNRADKCLYSAKET-RNAV 450


>gi|325981624|ref|YP_004294026.1| diguanylate cyclase [Nitrosomonas sp. AL212]
 gi|325531143|gb|ADZ25864.1| diguanylate cyclase [Nitrosomonas sp. AL212]
          Length = 637

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 8/176 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           +L      +S+  + D L+G LN   F       I+ L      L     DID FKQ+ND
Sbjct: 445 QLETQLQEMSEQVQEDHLTGALNRRGFDKAFEREITQLARSQGTLCFALLDIDNFKQLND 504

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD  + +L + +         + R GGEEFA     S  + A      +R+ + 
Sbjct: 505 THGHHVGDDALKYLVEAVKETVRRDDVISRYGGEEFAILLPNSGLKAAISTVARIRRYL- 563

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  +     + IT SAG+A+    E   ++  R D+ALY AK++G+N++V   +
Sbjct: 564 TKKFFLHGNNRLLITFSAGVAQYQPGESQESLFKRTDEALYFAKRNGKNQIVAAEE 619


>gi|170681443|ref|YP_001743835.1| sensory box-containing diguanylate cyclase [Escherichia coli
           SMS-3-5]
 gi|331672870|ref|ZP_08373656.1| putative GGDEF domain protein [Escherichia coli TA280]
 gi|170519161|gb|ACB17339.1| sensory box-containing diguanylate cyclase [Escherichia coli
           SMS-3-5]
 gi|331070091|gb|EGI41460.1| putative GGDEF domain protein [Escherichia coli TA280]
          Length = 430

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|119470514|ref|ZP_01613217.1| response regulator/GGDEF domain protein [Alteromonadales bacterium
           TW-7]
 gi|119446215|gb|EAW27492.1| response regulator/GGDEF domain protein [Alteromonadales bacterium
           TW-7]
          Length = 411

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 81/167 (48%), Gaps = 16/167 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI-------VFFDIDYFKQINDNFGHPVGD 152
           I   +  D L+ L N   F     +  ++LS+          DID+FK IND +GH  GD
Sbjct: 250 IKHQANTDYLTDLPNRRYFFEQANNSLKELSLKKVNGALAMIDIDHFKSINDTYGHDAGD 309

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  L+  L   F     V RLGGEEFA      +  EA       R  +EN+    S 
Sbjct: 310 QVLKGLAICLKKYF-EKYLVARLGGEEFAVYFADENTPEALKRLEGFRYFVENNSQEFSK 368

Query: 213 GPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNRVV 256
              I +TIS G +      P+    T++ +ADQ LY AK+SGRN+VV
Sbjct: 369 -EKIKLTISIGFS----TGPVYQMDTLLKQADQKLYEAKESGRNKVV 410


>gi|323977026|gb|EGB72113.1| GGDEF domain-containing protein [Escherichia coli TW10509]
          Length = 410

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAITQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVTKVSISGLPRF--T 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409


>gi|256376388|ref|YP_003100048.1| diguanylate cyclase [Actinosynnema mirum DSM 43827]
 gi|255920691|gb|ACU36202.1| diguanylate cyclase [Actinosynnema mirum DSM 43827]
          Length = 430

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 11/160 (6%)

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D  +GLLN  A+       ++      + L ++  D+D+FK IND  GH  GD+V+ 
Sbjct: 255 ARTDAKTGLLNAEAWHLQARVELNRTRQRGDALGLLMIDVDHFKGINDTHGHQTGDEVLR 314

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++D +         VGR GGEEF     G+   E+  +A   R  +    +   +GP  
Sbjct: 315 SIADVIRESVRRGDSVGRFGGEEFVVLLPGAGRDESMAIAERARCRV--GLLGTGAGPVR 372

Query: 217 HITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            +T+S G+A      ++ +  ++  AD ALY AK+ GR++
Sbjct: 373 GLTVSVGVAVWPDVPEDTVEGLLAAADGALYQAKRLGRDQ 412


>gi|221369368|ref|YP_002520464.1| Diguanylate cyclase precursor [Rhodobacter sphaeroides KD131]
 gi|221162420|gb|ACM03391.1| Diguanylate cyclase precursor [Rhodobacter sphaeroides KD131]
          Length = 439

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 12/190 (6%)

Query: 74  ISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125
           +++T+   L  ++ +   + + +     R+ +  R D L+ LLN   F  +L        
Sbjct: 241 VAVTVPPELAAVANAFNDMTRTIVEQEARLREFGRRDALTSLLNRREFDHALEQRAAPWT 300

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF--GTPMFVGRLGGEEFAAA 183
            E  +++  DID FK+IND  GH VGD V+  ++ +L      G P+F  R GGEEFA  
Sbjct: 301 GEPYALLLIDIDRFKRINDTHGHAVGDAVLRAVALRLAASARGGLPLF--RYGGEEFALL 358

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              +   EA   A  LR+ +    + +  G  I +TIS GIA     +  + +   AD+A
Sbjct: 359 LDRAGAAEALPEAERLRRAVAEEPVELEDGTRIAVTISVGIALGARGQAGAELFAAADRA 418

Query: 244 LYVAKKSGRN 253
           LY AK +GRN
Sbjct: 419 LYAAKDAGRN 428


>gi|94266350|ref|ZP_01290051.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93453064|gb|EAT03546.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 451

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 14/163 (8%)

Query: 107 DCLSGLLNHSA------FISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GL NH+A        +S    N   L +   D+D+FK++ND +GH  GD+V+  L+
Sbjct: 282 DAMTGLYNHTAGKEHLNLATSTAQRNGSPLCLAIIDVDWFKKVNDTYGHATGDQVLITLA 341

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK---IIENSQINISSGPSI 216
             L     T   V R GGEEF A   G     A  + +++R+    IE     +    + 
Sbjct: 342 RLLKQRLRTTDIVCRFGGEEFGAILPGCDLPTAQRIMDEMRQSYAAIEFRADEV----TF 397

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           H + S G+A     +    +   AD +LY AK  GRNRVV ++
Sbjct: 398 HSSFSCGVASIADCDGPVELWKAADMSLYAAKNGGRNRVVTWT 440


>gi|74312287|ref|YP_310706.1| hypothetical protein SSON_1790 [Shigella sonnei Ss046]
 gi|73855764|gb|AAZ88471.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|323168223|gb|EFZ53909.1| hypothetical protein SS53G_1536 [Shigella sonnei 53G]
          Length = 430

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|331646672|ref|ZP_08347775.1| putative GGDEF domain protein [Escherichia coli M605]
 gi|331045424|gb|EGI17551.1| putative GGDEF domain protein [Escherichia coli M605]
          Length = 430

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|332715993|ref|YP_004443459.1| diguanylate cyclase [Agrobacterium sp. H13-3]
 gi|325062678|gb|ADY66368.1| diguanylate cyclase [Agrobacterium sp. H13-3]
          Length = 664

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 12/176 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +LS  D L+GL N  A    L           E  ++   D+D+FK+ ND +GH  GDK 
Sbjct: 227 RLSNTDSLTGLQNRRAIDQHLRLLWDNWSKKGEGFAVFLIDVDFFKKYNDRYGHQEGDKC 286

Query: 155 IAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  + + L   +      +GR GGEEF   A   S Q+   LA  +R  +E+  ++    
Sbjct: 287 LVTVGNALQDAIIDHGASIGRYGGEEFIVLAPFKSRQQVGELAETIRHTVEDLSLSHDQR 346

Query: 214 PS----IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                 + ++I A          +  II  AD+ALY+AK +GRN +  F   +  T
Sbjct: 347 RDGTFIVTVSIGASFTRPNPDGKLEKIINEADRALYIAKANGRNCMKLFDPDDPQT 402


>gi|323162446|gb|EFZ48298.1| hypothetical protein ECE128010_1347 [Escherichia coli E128010]
          Length = 430

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|300718335|ref|YP_003743138.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Erwinia
           billingiae Eb661]
 gi|299064171|emb|CAX61291.1| Periplasmic sensor diguanylate cyclase/phosphodiesterase [Erwinia
           billingiae Eb661]
          Length = 717

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 109/234 (46%), Gaps = 26/234 (11%)

Query: 47  NIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSI----------LKELFI 95
           NI + Y+   P   G + ++V    +++  + I+L+   ++  +          +++L  
Sbjct: 229 NIPVSYVSWQPMRPGSQMLMVTGPLVLLAMLAITLMCIKMTRRLWTSSLKLSESMQKLEA 288

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S  +  QL+  D L+GL N +A        +S+L +  E + ++  D+D FK IND +GH
Sbjct: 289 SEAQAQQLALHDVLTGLPNRAAMEQQLTQRLSNLSAEGENIGLLLLDLDRFKMINDTYGH 348

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILANDLRKIIENS 206
             GD +I  +  +L  +      VGRLGG+EF      L    Q  A+     ++II   
Sbjct: 349 HTGDDLIVEIGQRLSALLRPEDAVGRLGGDEFVVVVNHLQDDRQITAL----CQQIIACL 404

Query: 207 QINIS-SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              I+  G  + + +S GIA    H      ++ +AD ALY AK  GR R   F
Sbjct: 405 TTPITLQGNRLWVGVSIGIALAPQHGTERQELMRKADIALYAAKAEGRGRYHMF 458


>gi|256372297|ref|YP_003110121.1| diguanylate cyclase/phosphodiesterase [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008881|gb|ACU54448.1| diguanylate cyclase/phosphodiesterase [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 1167

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 69/207 (33%), Positives = 104/207 (50%), Gaps = 21/207 (10%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ--LSRIDCLSGLLNHSA 117
           GL +  V+ L L  +  T + LLG     +     +   R  Q  L++ D L+GL+N SA
Sbjct: 621 GLAHAGVDELRLASVIGTGAQLLGLGMAEVALRDRLDRERALQQRLAQTDTLTGLMNRSA 680

Query: 118 FISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
           F   L +    E +++ F D+D FK +ND+ GH  GD+++A L   L  +    +FV RL
Sbjct: 681 FEVRLNALVAQEPVAVGFLDLDGFKDVNDSLGHTKGDELLAALGRALARLAAPDVFVARL 740

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAGIA-----ERCH 229
           GG+EFA A +GS+          L +I E   + + + G    IT S G A      R  
Sbjct: 741 GGDEFAVALVGSARHR-------LDQIAERISVMVRTIGQRWRITGSIGWALAPDDVRTT 793

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV 256
           +E    ++  AD+ALY AK +G+ R V
Sbjct: 794 RE----LLMAADEALYAAKAAGKARWV 816


>gi|226355662|ref|YP_002785402.1| regulator protein [Deinococcus deserti VCD115]
 gi|226317652|gb|ACO45648.1| putative regulator protein, GGDEF domain; putative membrane protein
           [Deinococcus deserti VCD115]
          Length = 291

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 82/165 (49%), Gaps = 18/165 (10%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           + +R+D L+G+    A    L          N  +SIV  DID+FK +ND  GH  GD V
Sbjct: 133 RAARLDALTGVYGRGAIEEELKRSMHTAREANTAVSIVVTDIDHFKSVNDLHGHMAGDDV 192

Query: 155 IAFLSDQL---VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           +  ++  L   V   G    VGR GGEEF     G S  +A ++A  LR+  E S + + 
Sbjct: 193 LRAVAKCLRRNVRRIGG--VVGRWGGEEFVVLLPGISRTDALVVAEQLRR--ELSAVPLG 248

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
             P   IT S G+A  R   +    +  RAD A+Y AK++GRN V
Sbjct: 249 GLP---ITASFGVAAYRGTGDSPEKMFSRADLAMYEAKRAGRNAV 290


>gi|224369891|ref|YP_002604055.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223692608|gb|ACN15891.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 470

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 9/158 (5%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G  N  A+   +         Y    S++F D D+FK IND +GH +GDK +  + 
Sbjct: 312 DPLTGAYNRRAYNQRIEDEMDRFLRYGTLFSLLFIDADHFKNINDTYGHAIGDKCLQEII 371

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +   +      + R GGEEF      +    A  +A  +RK IE     +    ++ +T
Sbjct: 372 KRASKLIRKSDMLARYGGEEFVLVMPETDAANAKNVAEKIRKTIERIAF-LYKKDAVKVT 430

Query: 220 ISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256
           +S G+ +    + +   ++ RAD A+Y AK+ GRNRVV
Sbjct: 431 VSIGVTQVRENDAVPQDVLGRADAAVYQAKQDGRNRVV 468


>gi|222053163|ref|YP_002535525.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Geobacter sp. FRC-32]
 gi|221562452|gb|ACM18424.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Geobacter sp. FRC-32]
          Length = 439

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 91/179 (50%), Gaps = 21/179 (11%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148
           +Y+R+  ++  D L+ L N   F   LG        YN+  ++++ D+D FK +NDN GH
Sbjct: 261 AYDRLQYMANFDPLTSLPNRILFFDRLGQTVSHARRYNQMFALLYVDLDRFKPVNDNLGH 320

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF-----AAAALGSSEQEAA--ILANDLRK 201
            VGD ++  ++ ++         V R+GG+EF       A  G +E  A   I A D+  
Sbjct: 321 DVGDMLLREVAGRMTGCIRDADTVARMGGDEFCIILSKIAGKGDAETVAGKIIAALDVDF 380

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +   Q +I  G SI I+I    ++    +P   ++  AD A+Y AK++GRNR   F+D
Sbjct: 381 CLRGHQCSI--GASIGISIFPADSD----DP-QLLLKMADMAMYNAKENGRNRFCLFAD 432


>gi|168754353|ref|ZP_02779360.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4401]
 gi|168799156|ref|ZP_02824163.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC508]
 gi|187775846|ref|ZP_02798727.2| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4196]
 gi|188024578|ref|ZP_02772373.2| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4113]
 gi|189010289|ref|ZP_02806055.2| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4076]
 gi|189402984|ref|ZP_02792537.2| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4486]
 gi|208808066|ref|ZP_03250403.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4206]
 gi|208816404|ref|ZP_03257583.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4045]
 gi|208822596|ref|ZP_03262915.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4042]
 gi|209400191|ref|YP_002269752.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4115]
 gi|187770376|gb|EDU34220.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4196]
 gi|188018208|gb|EDU56330.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4113]
 gi|189001295|gb|EDU70281.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4076]
 gi|189358305|gb|EDU76724.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4401]
 gi|189363103|gb|EDU81522.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4486]
 gi|189378245|gb|EDU96661.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC508]
 gi|208727867|gb|EDZ77468.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4206]
 gi|208733052|gb|EDZ81740.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4045]
 gi|208738081|gb|EDZ85764.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4042]
 gi|209161591|gb|ACI39024.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4115]
 gi|320192470|gb|EFW67112.1| Sensory box/GGDEF domain protein [Escherichia coli O157:H7 str.
           EC1212]
 gi|320637456|gb|EFX07256.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. G5101]
 gi|320648475|gb|EFX17130.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H- str. H 2687]
 gi|320664405|gb|EFX31556.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326338525|gb|EGD62352.1| Sensory box/GGDEF domain protein [Escherichia coli O157:H7 str.
           1125]
 gi|326345575|gb|EGD69315.1| Sensory box/GGDEF domain protein [Escherichia coli O157:H7 str.
           1044]
          Length = 476

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 309 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 368

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +         + R+GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 369 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 428

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 429 SIGAVVTQGNALNPNEIYRLADNALYEAKETGRNKVV 465


>gi|217973467|ref|YP_002358218.1| PAS/PAC and GAF sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS223]
 gi|217498602|gb|ACK46795.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS223]
          Length = 749

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 11/163 (6%)

Query: 107 DCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N +A       FI+S  S     S +  D+D FKQ+ND  GH  GD ++  + 
Sbjct: 318 DSLTGLANRNALFKLIQSFITS-DSLTPGFSFMLMDLDNFKQVNDTHGHDKGDALLVQVV 376

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHI 218
            Q+       M   RLGG+EFA    G  +++E A LA  + K +    + ++ G  ++ 
Sbjct: 377 RQICECLNDTMVFARLGGDEFALLLPGIVNQKELAQLAETINKHVAKRYV-LADGKGVYS 435

Query: 219 TISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++S GIA        +  ++  ADQA+Y++K +GRNR   F++
Sbjct: 436 SVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTE 478


>gi|147673258|ref|YP_001218185.1| GGDEF family protein [Vibrio cholerae O395]
 gi|262170059|ref|ZP_06037748.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|146315141|gb|ABQ19680.1| GGDEF family protein [Vibrio cholerae O395]
 gi|227014585|gb|ACP10795.1| GGDEF family protein [Vibrio cholerae O395]
 gi|262021467|gb|EEY40179.1| GGDEF family protein [Vibrio cholerae RC27]
          Length = 312

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 8/167 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFI--SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           IS     + S+ID L+ L N   F   S   +    L ++ FDID+FKQIND +GHP GD
Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPETLLGLIIFDIDHFKQINDTYGHPAGD 205

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L           R GGEEF              LA ++R  +E+  + +  
Sbjct: 206 YVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANVIGLAENIRDYVESHTL-MWQ 264

Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  I +T+SAG    A   H      +++ ADQAL  AK+ GRNRV+
Sbjct: 265 GQQIALTLSAGCTMGAMMSHN--WDNLLHTADQALLSAKRLGRNRVI 309


>gi|330890882|gb|EGH23543.1| GGDEF domain-containing protein [Pseudomonas syringae pv. mori str.
           301020]
          Length = 527

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 15/172 (8%)

Query: 107 DCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L      +  E+  LS++  D D+FK+ ND++GH  GD+ +  L+
Sbjct: 336 DKLTGLANRRRFDQFLEVEFKRARRERSLLSLILIDADHFKRYNDHYGHLAGDECLVALA 395

Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +      P  V  R GGEE A    G+ E     +A ++ + I + QI   + P   +
Sbjct: 396 RVVEQCIRHPGDVAARYGGEEIAVVLPGTDESSTRQVAENILQAIRDEQIEHPASPFGIV 455

Query: 219 TISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           T+S G+A     +R   +   ++I  AD+ALY AK  GRNRV   S+I  +T
Sbjct: 456 TVSLGVATFVGTDRQLDQ--RSLIELADRALYAAKSQGRNRVNVASEIATST 505


>gi|325845271|ref|ZP_08168575.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sp. HGF1]
 gi|325488712|gb|EGC91117.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sp. HGF1]
          Length = 785

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 92/166 (55%), Gaps = 9/166 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL--SIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           I +L+  D L+GL N  +    + S   +L  +++F D+D FK++ND+FGH  GD+ +  
Sbjct: 366 IKRLAYTDFLTGLHNRRSLYKYIESEKAQLNLTVMFMDLDNFKKLNDSFGHHYGDEALLL 425

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSI 216
           +S +L+ +     FV R+GG+EF       +SE +   L N + +I+   +   S G   
Sbjct: 426 ISKKLISL-CEDAFVARIGGDEFVVVWKNLNSETD---LMNKINEILLEMKTEFSKGDKT 481

Query: 217 H-ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + I++S GI     ++  +  ++ + D ALY AK+ G+N+ V ++D
Sbjct: 482 NIISVSMGIVNSKGRDIDVDHLLLQGDLALYRAKEKGKNQFVIYTD 527


>gi|312971539|ref|ZP_07785714.1| uncharacterized protein ydaM [Escherichia coli 1827-70]
 gi|310336136|gb|EFQ01336.1| uncharacterized protein ydaM [Escherichia coli 1827-70]
          Length = 430

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|220933432|ref|YP_002512331.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994742|gb|ACL71344.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
          Length = 1076

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 9/159 (5%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +++ D L+GL N   F       ISS    + + ++++FD+D FK IND FGH  GD V+
Sbjct: 654 MAQHDALTGLYNRHRFQEHLDRMISSAQRNDSRFALLYFDLDEFKYINDTFGHRAGDTVL 713

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              + ++  +  +     RLGG+EFA  A    + E + LA  + + I         G +
Sbjct: 714 VRAAGEVSSLVRSGEVFARLGGDEFAVLAEIRHDDEPSQLAERIARAISAIPFRF-RGSN 772

Query: 216 IHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           + +T S GIA    H + +  ++  AD A+Y AK +G+N
Sbjct: 773 LRLTASIGIAFFPEHGDNVEDLVAHADTAMYQAKSNGKN 811


>gi|167913383|ref|ZP_02500474.1| hypothetical protein Bpse112_23045 [Burkholderia pseudomallei 112]
          Length = 441

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 87/173 (50%), Gaps = 11/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           + LF ++  + + +  D L+ + N S F             +N  L++V  D+D+FKQ N
Sbjct: 254 RRLFDAHASLMRTASHDALTMVYNRSYFNEQFERAFHYARRHNTPLALVMVDVDHFKQYN 313

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD  +A ++  L  V G    FV R GGEEFA     + E+ AA +A   R+ 
Sbjct: 314 DTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPRADERGAATIAERARQA 373

Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
           +E  +I   + P  ++T+SAG A       E    +I  AD ALY AK  GRN
Sbjct: 374 VERLRIAADTAPG-YVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRN 425


>gi|126664503|ref|ZP_01735487.1| putative diguanylate cyclase (GGDEF) with HAMP domain [Marinobacter
           sp. ELB17]
 gi|126630829|gb|EBA01443.1| putative diguanylate cyclase (GGDEF) with HAMP domain [Marinobacter
           sp. ELB17]
          Length = 445

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 85/186 (45%), Gaps = 13/186 (6%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLS 130
           ++  L Y    + +++      +  L+R+D L+GL N  +        I      N    
Sbjct: 254 MTRTLKYSRDELEQKIAERTTDLHSLARVDSLTGLCNRRSLDEILEVEIQRASRRNAGFG 313

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +++ DID+FK IND+ GH  GD+V+   +  L          GR GG+EF          
Sbjct: 314 VMWLDIDHFKAINDSLGHQTGDEVLCQAALWLQYSLRPYDQPGRWGGDEFMVVLSPCDHN 373

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKK 249
               L+  LR+  E      S+  +I IT+S G A  C   +   TI++ ADQALY AK 
Sbjct: 374 ILRFLSERLRQTFERE----SANGNIPITVSVG-AYLCQPGDSAKTILHEADQALYQAKA 428

Query: 250 SGRNRV 255
            GRN V
Sbjct: 429 RGRNTV 434


>gi|119774648|ref|YP_927388.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119767148|gb|ABL99718.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella amazonensis SB2B]
          Length = 416

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 116 SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
           S  +  LG      S+   DID+FK +ND  GH VGD V+   + +L    G    V R 
Sbjct: 272 SQQVPVLGQQGASFSLAVLDIDFFKDVNDKHGHDVGDFVLTEFASRLKQSLGQHFTVARF 331

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPI 233
           GGEEF  A  G   + A  L    R+ +      +     + +T S GI    H  +E +
Sbjct: 332 GGEEFVVALKGLDGKRALALMEGFRERLAMEPF-VFGELELRLTASIGIVALGHDSEETL 390

Query: 234 STIIYRADQALYVAKKSGRNRVV 256
            ++I +AD ALY AK +GRNR V
Sbjct: 391 DSLIKQADVALYQAKTNGRNRCV 413


>gi|304408638|ref|ZP_07390259.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS183]
 gi|307305467|ref|ZP_07585215.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica BA175]
 gi|304352459|gb|EFM16856.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS183]
 gi|306911770|gb|EFN42195.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica BA175]
          Length = 749

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 11/163 (6%)

Query: 107 DCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N +A       FI+S  S     S +  D+D FKQ+ND  GH  GD ++  + 
Sbjct: 318 DSLTGLANRNALFKLIQSFITS-DSLTPGFSFMLMDLDNFKQVNDTHGHDKGDALLVQVV 376

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHI 218
            Q+       M   RLGG+EFA    G  +++E A LA  + K +    + ++ G  ++ 
Sbjct: 377 RQICECLNDTMVFARLGGDEFALLLPGIVNQKELAQLAETINKHVAKRYV-LADGKGVYS 435

Query: 219 TISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++S GIA        +  ++  ADQA+Y++K +GRNR   F++
Sbjct: 436 SVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTE 478


>gi|209548193|ref|YP_002280110.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209533949|gb|ACI53884.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 1062

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 84/179 (46%), Gaps = 16/179 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQIND 144
           EL ++ NRI   S  D L+ L N      +L           +K SI+  D+D FK+IND
Sbjct: 623 ELELAKNRIEHNSLHDPLTALANRRKLDIALEELTNDGRRQRQKFSILHIDLDRFKEIND 682

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA----NDLR 200
             GH  GD ++   S  L         V R+GG+EF   AL   + E A L+     ++R
Sbjct: 683 TLGHAAGDAMLVHASKVLAKNVRGSDIVARIGGDEFVILALDVGDTEMAQLSARIIEEMR 742

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + I+    +   G SI + ++ GI     K     ++  AD ALY AK +GRNR   F+
Sbjct: 743 QPIDFQGFSCRCGVSIGVALANGIHVDARK-----VLINADIALYRAKSTGRNRFEFFN 796


>gi|90578694|ref|ZP_01234504.1| sensory box/GGDEF family protein [Vibrio angustum S14]
 gi|90439527|gb|EAS64708.1| sensory box/GGDEF family protein [Vibrio angustum S14]
          Length = 438

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 72/130 (55%), Gaps = 13/130 (10%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAAL 185
           S++F DID+FKQ+ND +GH +GD+V+   +  +           R GGEEF     A  L
Sbjct: 309 SMIFIDIDHFKQVNDKYGHRLGDEVLRRFASLINKRVRKSDVFARWGGEEFVIFCPATPL 368

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
           G++    A LA  +R+ IE++  +      + +T S G+AE    E  S  I RAD+AL 
Sbjct: 369 GAT----AELAESIRECIESAVWD----NGMKVTCSLGVAE-LENEGYSHFIERADEALM 419

Query: 246 VAKKSGRNRV 255
            AK+ GRNRV
Sbjct: 420 KAKERGRNRV 429


>gi|157160853|ref|YP_001458171.1| sensory box-containing diguanylate cyclase [Escherichia coli HS]
 gi|188493845|ref|ZP_03001115.1| sensory box-containing diguanylate cyclase [Escherichia coli 53638]
 gi|256022945|ref|ZP_05436810.1| hypothetical protein E4_06209 [Escherichia sp. 4_1_40B]
 gi|300948426|ref|ZP_07162529.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1]
 gi|300954594|ref|ZP_07167039.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1]
 gi|301022691|ref|ZP_07186541.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
 gi|157066533|gb|ABV05788.1| sensory box-containing diguanylate cyclase [Escherichia coli HS]
 gi|188489044|gb|EDU64147.1| sensory box-containing diguanylate cyclase [Escherichia coli 53638]
 gi|299881136|gb|EFI89347.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
 gi|300318428|gb|EFJ68212.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1]
 gi|300452101|gb|EFK15721.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1]
 gi|332343040|gb|AEE56374.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 430

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|147673926|ref|YP_001217148.1| GGDEF family protein [Vibrio cholerae O395]
 gi|262169618|ref|ZP_06037309.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|146315809|gb|ABQ20348.1| GGDEF family protein [Vibrio cholerae O395]
 gi|262021852|gb|EEY40562.1| GGDEF family protein [Vibrio cholerae RC27]
          Length = 195

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 7/161 (4%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           L+  D L+G  N  +  +S   +        L ++  D+D+FK IND FGH  GDKV+  
Sbjct: 20  LASRDPLTGAHNRLSLTTSFQHFERFSDQTSLCLLVIDLDFFKSINDQFGHDTGDKVLIE 79

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            +     V G      R+GGEEF       S ++A  +   LR I+            + 
Sbjct: 80  TTRLFTQVVGDNNLY-RIGGEEFCVTLFDQSLEQAGRVCEHLRAIVSQHLFAFRE-KRVQ 137

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +TIS G+ E    + ++ ++  AD  LY AKK+GRN+V  F
Sbjct: 138 VTISIGVCEYQAGDQLNDLLKFADMELYRAKKAGRNQVRLF 178


>gi|238794768|ref|ZP_04638371.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Yersinia intermedia ATCC 29909]
 gi|238725922|gb|EEQ17473.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Yersinia intermedia ATCC 29909]
          Length = 350

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
           Y++ F S+FI   I IA  F   + L   Y    I    +S++++SI       Y   S 
Sbjct: 127 YYTFFLSVFIPQCINIALNFDRLVSLGYLY--RSIFKSLMSIILLSIL------YFIFSR 178

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQINDNF 146
            ++ F  ++ +   S  D L+ L N  +    L ++ +      I   DID+FK++ND+ 
Sbjct: 179 FQKTFSKFSMLQFQSSTDQLTKLPNRFSINRHLDNFKQTRKDRFIALIDIDFFKKVNDSH 238

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GDK++  ++ +L  V     F+ R GGEEF      +  + A  +   +   I ++
Sbjct: 239 GHSAGDKILYDIAQELKSVIRGNDFLARYGGEEFLLLIHTADNRIAREILARIITHIRDT 298

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                   S++ITIS G A           I  AD+ALY AK  GR+ VV
Sbjct: 299 LFITPDNHSLNITISIGAALYVKDTSFDDAIKSADKALYQAKNGGRDEVV 348


>gi|218246546|ref|YP_002371917.1| diguanylate cyclase [Cyanothece sp. PCC 8801]
 gi|218167024|gb|ACK65761.1| diguanylate cyclase [Cyanothece sp. PCC 8801]
          Length = 462

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 92/180 (51%), Gaps = 11/180 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL  + +++  L+ ID L+ + N   F          L    + LS++  D+DYFK  N
Sbjct: 277 QELQKANDKLEYLAIIDGLTQVHNRRYFNQYLVQEWRRLMRERQSLSLILCDVDYFKLFN 336

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D++ H  GD  +  ++  +  V   P   V R GGEEFA     ++E  AA +A  +R  
Sbjct: 337 DHYLHQAGDDCLQKIAQVMQDVVKRPADLVARFGGEEFAIILSNTNELGAARVAQKIRLE 396

Query: 203 IENSQI-NISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFS 259
           +E  +I +  S  S ++T+S GIA       IS+  +I  AD+ALY AK  GRNR   ++
Sbjct: 397 VEKLKIPHALSQCSEYVTLSLGIATTIPTPDISSERLILAADKALYQAKNMGRNRYCLYA 456


>gi|188592140|ref|YP_001796738.1| diguanylate cyclase (ggdef) domain [Cupriavidus taiwanensis LMG
           19424]
 gi|170938514|emb|CAP63501.1| putative diguanylate cyclase (GGDEF) domain [Cupriavidus
           taiwanensis LMG 19424]
          Length = 583

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 13/183 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFK 140
           S+ +        +  L+  D L+GL N         A  +   +    +++V  DID+FK
Sbjct: 385 SLFRHYLARGEALRTLAETDALTGLANRRVFAARFAAEAARCAAEQRPIAVVMLDIDHFK 444

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD V+  ++  L           RLGGEEFA    G+   +AA +A +LR
Sbjct: 445 AINDRWGHASGDVVLRAVAAALRSGVRKDDLPARLGGEEFAVLLPGTGVDDAAAVAGNLR 504

Query: 201 KIIENSQINISS----GPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNR 254
           + +E  + + ++       +  T S G+A      P  +  ++  AD+ LY AK +GRN+
Sbjct: 505 QRLERLRCDPAADALCNEPMRFTASFGVAGSAPGVPGSLDALLMAADRRLYAAKANGRNQ 564

Query: 255 VVC 257
           VV 
Sbjct: 565 VVA 567


>gi|114777426|ref|ZP_01452423.1| GGDEF/response regulator receiver domain protein [Mariprofundus
           ferrooxydans PV-1]
 gi|114552208|gb|EAU54710.1| GGDEF/response regulator receiver domain protein [Mariprofundus
           ferrooxydans PV-1]
          Length = 277

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 20/174 (11%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N    +  L         Y    +IV  D+D FKQ+ND +GH  GDKV++ ++
Sbjct: 104 DVLTGLYNRRYMMEQLYQGVSQATRYRHPYAIVVMDLDRFKQVNDIYGHAAGDKVLSTMA 163

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L          GR GGEEF      +    A   A    K +  + + +  G SI ++
Sbjct: 164 GILRESVRDADIAGRWGGEEFLVLLPHTDLDGARQAAEQWLKRVLATPLGVGGGKSIQVS 223

Query: 220 ISAGIA--ERCHKEP-----------ISTIIYRADQALYVAKKSGRNRVVCFSD 260
            SAG+A  +  +  P           + T+++ AD+ +Y+AK SGR+ VV   D
Sbjct: 224 FSAGVAMFDPVNGRPAVKQALNIDQQVETLLHLADKRMYLAKDSGRSCVVVSGD 277


>gi|332091751|gb|EGI96831.1| hypothetical protein SB521682_1541 [Shigella boydii 5216-82]
          Length = 410

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409


>gi|330684523|gb|EGG96236.1| diguanylate cyclase (GGDEF) domain protein [Staphylococcus
           epidermidis VCU121]
          Length = 356

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 9/168 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
           NR     + D L+GL N   F   L        ++NE L ++  DID FK +ND + H  
Sbjct: 182 NRYENEDKYDYLTGLGNVKEFDRHLNQLSKYTETHNESLGLLLIDIDGFKDVNDTYTHQA 241

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  +S  L         + R GGEEF+      +  ++  LA ++R+ +E S  ++
Sbjct: 242 GDAVLKQMSQLLKNYVPKQFLIFRNGGEEFSVVINDYTLDQSVKLAENIRQGVEKSSFHL 301

Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256
            +   I +++S G+      +  S   +   AD  ++VAK  GRN+V+
Sbjct: 302 PNKEVIKLSVSIGVGYLTQDDRKSQRRVFKDADDMVHVAKSEGRNKVM 349


>gi|299530088|ref|ZP_07043514.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298721745|gb|EFI62676.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 609

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 86/170 (50%), Gaps = 7/170 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           + L+  D L+GL N  A   +L       + L++ F D+D FKQ+ND  GH  GD+V+  
Sbjct: 440 NHLANHDALTGLANRRALEETLNQELADGQMLAVCFMDLDGFKQVNDTQGHDAGDEVLRV 499

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGPS 215
           ++ +L         V RLGG+EF    + L +  +  +++   +  +     I ++ G  
Sbjct: 500 VAARLTAQARAGDCVARLGGDEFVVLLSGLHTPGEAMSVMKRCMEAV--RQPIALNGGVM 557

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           + +  S GI+        + ++  AD+A+Y AK +G+ R+V  SD+  ++
Sbjct: 558 VQVGSSIGISISTADSSSANLMQSADEAMYSAKHAGKGRIVQHSDLSQDS 607


>gi|264677578|ref|YP_003277484.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262208090|gb|ACY32188.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 406

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 115/230 (50%), Gaps = 14/230 (6%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE 92
           ++ SI   T  F     ++ +G +    L       L+LV I +  +LL  ++  +I  +
Sbjct: 154 LWLSIAFTTYTFTRPGLIWLLGYSDLRSLPKSPYWLLTLVSI-LNFALLFSFVMTAIAAK 212

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
             +  +++ +   +D L+ LLN  +F       ++ +  Y   ++++  DID+FK+IND+
Sbjct: 213 ETV--DKLRRERDLDALTQLLNRRSFQEYAQQRLADIRLY--PMAVLACDIDHFKRINDS 268

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD+V+  +S  L         V R GGEEF       S ++A  +A  +++ +  
Sbjct: 269 WGHKRGDEVLQLVSTTLKDSVRENDLVARFGGEEFVLLLTEISLKDAEAIALRIQRDLRL 328

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   + SG +  +T+S GI+      P+   +  AD+ LY AK +GR+RV
Sbjct: 329 NNEVLPSGYT--LTLSFGISALDSTTPLDQALREADRLLYEAKNAGRDRV 376


>gi|258405957|ref|YP_003198699.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692]
 gi|257798184|gb|ACV69121.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692]
          Length = 544

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 73/157 (46%), Gaps = 11/157 (7%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N       +G          E  + +  DIDYFK IND  GH VGD+V+   +
Sbjct: 385 DSLTGIFNRERLDEDMGLLIHRCHERGEGFACILVDIDYFKTINDTKGHTVGDQVLVEFA 444

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF     G+  + A+ LA  +R  I  ++          ++
Sbjct: 445 RLLAQQSRGTDSVFRYGGEEFLMVLPGADLRGASQLAERVRAAIGGTRF----AGETRLS 500

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S G+AE    +    ++ RAD ALY AK  GRNRVV
Sbjct: 501 ASFGVAEYQLSDNWEGLLSRADTALYAAKAQGRNRVV 537


>gi|237749424|ref|ZP_04579904.1| predicted protein [Oxalobacter formigenes OXCC13]
 gi|229380786|gb|EEO30877.1| predicted protein [Oxalobacter formigenes OXCC13]
          Length = 806

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 13/183 (7%)

Query: 88  SILKELFISYNRI---SQLSRIDCLSGLLNHSAF-ISSLGSYNEKLS------IVFFDID 137
           S+L  +++ Y R+   ++ ++ D L+GLLN  AF + ++ +    L+      +   D D
Sbjct: 613 SLLATVWV-YRRLGDATKQAQSDGLTGLLNRGAFEMRAMETLQRSLTDGHGVMLAIIDCD 671

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LA 196
           +FK +ND +GH  GDKV++ L+D L   F     V R+GG+EFA     SS +   I   
Sbjct: 672 HFKLVNDTYGHLTGDKVLSALADCLRENFRQDDLVSRIGGDEFAICCKISSGETGVINKI 731

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             L +I   +      G +I+ T+S GIA           + + AD ALY AK+ GRN+ 
Sbjct: 732 ARLSEIWSKTPFETGEGKTIYSTLSIGIAISPADGTAYDKLFHHADIALYKAKQQGRNQY 791

Query: 256 VCF 258
             +
Sbjct: 792 AIY 794


>gi|117925193|ref|YP_865810.1| diguanylate cyclase with PAS/PAC sensor [Magnetococcus sp. MC-1]
 gi|117608949|gb|ABK44404.1| diguanylate cyclase with PAS/PAC sensor [Magnetococcus sp. MC-1]
          Length = 564

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 16/173 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +LS  D L+ L+N       L         Y   LSI+  D+D+FK+ ND +GH  
Sbjct: 392 QQLRELSTTDGLTKLINRRRMDELLDEELKRAVRYGLNLSILLLDVDHFKKFNDTYGHEQ 451

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  L+ ++   F    +  R GGEEF      +    A  +A+ LR+ +   +++ 
Sbjct: 452 GDHVLIALAAEMKSYFRNIDYPCRYGGEEFFVILPNTDADGAIKVADRLRERVAEKEVD- 510

Query: 211 SSGPSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                + +TIS G+A         P   ++  AD ALYVAK+ GRN+VV  S+
Sbjct: 511 ----GLRVTISIGVASYPDLSITRP-DAMVRAADSALYVAKEQGRNKVVYASE 558


>gi|315127139|ref|YP_004069142.1| GGDEF domain-containing protein [Pseudoalteromonas sp. SM9913]
 gi|315015653|gb|ADT68991.1| GGDEF domain-containing protein [Pseudoalteromonas sp. SM9913]
          Length = 298

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 13/165 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHP 149
           YNR+ +L+  D L+GL N S F    +  L ++       S++  D+D FKQ+NDN+GH 
Sbjct: 134 YNRVLRLATKDSLTGLNNRSQFNDMLLQKLENHRRNGHSFSLMLLDLDNFKQVNDNYGHK 193

Query: 150 VGDKV-IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           +GD V I F +     + GT   V R GG+EF+      +     ++A  + +++ NS I
Sbjct: 194 IGDDVLIEFAAVLSSSIRGTDS-VFRFGGDEFSILIEDPAFTTNKVVAERIMRLVRNSPI 252

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
                 +  I  +   ++ C  E    I  RAD+ LY AK SGRN
Sbjct: 253 MSKYNVTASIGFTLTNSDDCQNE----IFSRADKGLYKAKASGRN 293


>gi|311696440|gb|ADP99313.1| diguanylate cyclase [marine bacterium HP15]
          Length = 573

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 91/192 (47%), Gaps = 12/192 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFF 134
           LG  +  +  ++    + +++L+RID L+GL N           I      +    +++ 
Sbjct: 383 LGQSTRELETKVAQRTDELNRLARIDPLTGLKNRRGLDEILEEEIQRARRQDSGFGVIWL 442

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK INDN GH  GD+++  ++  L          GR GG+EF              
Sbjct: 443 DIDHFKTINDNLGHQAGDQILCRVALWLKAGVRPYDHPGRWGGDEFVVLLSPCDPDTLEQ 502

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +A  +R+++E  Q +  +G ++ +++    A     +   TI+  AD+ALY AK  GRN+
Sbjct: 503 IARRIRELVE--QESRKTGAAVTVSVGGFFAR--PGDTSDTILRHADRALYRAKAGGRNQ 558

Query: 255 VVCFSDIENNTC 266
            VC    ++ T 
Sbjct: 559 -VCIDTRDDETA 569


>gi|284921215|emb|CBG34281.1| putative signaling protein [Escherichia coli 042]
          Length = 430

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 336 RPLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|220936199|ref|YP_002515098.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997509|gb|ACL74111.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 388

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 101/225 (44%), Gaps = 25/225 (11%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            +F  Y+G +  Y   +     +  VI   T  L         L+E      R   L+ +
Sbjct: 170 RLFSVYLGQSVTY---WRHTHQMEAVIRERTAELRQALDQAQELRE------RYEALAVV 220

Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N         A +S    + +  +++  D+D+FK++ND+ GH  GD+V+  + 
Sbjct: 221 DDLTGLNNRRFFFPEAQAALSRTRRHGQPFAVLALDLDHFKRVNDDHGHAWGDRVLQDVG 280

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L  +      + R GGEEF  A  G+  + A  LA  +R  +     N+     + +T
Sbjct: 281 AALKSMLREGDILARFGGEEFMFALPGTDLEGAMSLAQRIRARLAKLSWNVGD-RCLLVT 339

Query: 220 ISAGI--------AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S G+        AE    E +  ++ +AD+ALY +K +GR+RV 
Sbjct: 340 ASMGVSGLGEDEAAEGSSHEILDRLVAQADEALYGSKHAGRDRVT 384


>gi|157145625|ref|YP_001452944.1| RNase II stability modulator [Citrobacter koseri ATCC BAA-895]
 gi|157082830|gb|ABV12508.1| hypothetical protein CKO_01371 [Citrobacter koseri ATCC BAA-895]
          Length = 691

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 18/185 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           SG+ + E   +  R+  L+  D ++GL N +A        I + G  + ++ IV+ D+D 
Sbjct: 247 SGTDITEERRTQERLRVLANTDTITGLPNRNAIHELINDAIENAG--DNQVGIVYLDLDN 304

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAI 194
           FK++ND +GH  GD+++  +S  ++        + RLGG+EF       + GS E  A+ 
Sbjct: 305 FKRVNDAYGHMFGDQLLQAVSLAILSCLEENQLLARLGGDEFIVLATQTSQGSLEAMASR 364

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +   LR+      I + +G SI I ++       H     ++I  AD A+Y AK+ GR +
Sbjct: 365 ILTRLRQPFRIGLIEVYTGCSIGIALAPQ-----HGHDSESVIRNADTAMYTAKEGGRGQ 419

Query: 255 VVCFS 259
              FS
Sbjct: 420 FCVFS 424


>gi|331662751|ref|ZP_08363674.1| putative GGDEF domain protein [Escherichia coli TA143]
 gi|331061173|gb|EGI33137.1| putative GGDEF domain protein [Escherichia coli TA143]
          Length = 410

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCTLA 315

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409


>gi|325261317|ref|ZP_08128055.1| GGDEF/response regulator receiver domain protein [Clostridium sp.
           D5]
 gi|324032771|gb|EGB94048.1| GGDEF/response regulator receiver domain protein [Clostridium sp.
           D5]
          Length = 317

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 11/181 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLS---IVFFDIDYFKQIN 143
           KEL  S  +++ ++  D L+GL N    I  L      Y  K     ++  DID FK +N
Sbjct: 138 KELLTSMEKLNYMAFRDGLTGLYNRRYVIGDLVEDITKYTGKARKNVLILADIDDFKMVN 197

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD  +  +++ +  +      V R GGEEF  A    +E EA  ++  +R+ +
Sbjct: 198 DTYGHEAGDMALICIANIMEGICRDYKVV-RWGGEEFLVALFNVTESEAFEVSETIRREV 256

Query: 204 ENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           E+ +I       S  IT+   + ER   E I   + +ADQALY  K++G+N  V + +IE
Sbjct: 257 EDFEIAYGEDTFSCTITLGMHVYER--HEGIEECVEKADQALYYGKRNGKNCSVWYENIE 314

Query: 263 N 263
            
Sbjct: 315 Q 315


>gi|293409736|ref|ZP_06653312.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470204|gb|EFF12688.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 410

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCTLA 315

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409


>gi|149909418|ref|ZP_01898073.1| sensory transduction protein kinase [Moritella sp. PE36]
 gi|149807528|gb|EDM67477.1| sensory transduction protein kinase [Moritella sp. PE36]
          Length = 409

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 78/174 (44%), Gaps = 25/174 (14%)

Query: 106 IDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           ID L+ +    A    L   + K SI   DID FK+ ND +GH +GD V+  ++ QL  V
Sbjct: 235 IDDLTRIPGRRALNIELAQLSGKYSIAMLDIDRFKKFNDAYGHDIGDSVLKMVASQLATV 294

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS------------- 212
            G    V R GGEEF     G S  +     N++R +I +    I               
Sbjct: 295 KGRGR-VFRYGGEEFTILFKGKSALDCVGYLNEIRVLIADYPFQIRQPVERREPQEEGAN 353

Query: 213 ----------GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                       ++ +TIS G+A ER        +I  AD+ LY AK+SGRN+V
Sbjct: 354 NTDSCREEFIDKTVKVTISIGVAQERSSTTSPDEVIIAADKLLYKAKESGRNQV 407


>gi|90426221|ref|YP_534591.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
 gi|90108235|gb|ABD90272.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
          Length = 778

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 15/171 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLS-IVFFDIDYFKQINDNFGHP 149
           RI  L+R D L+GL N   F   +        G    + S ++F D+D FKQ+ND  GHP
Sbjct: 333 RIIHLARYDELTGLPNRVNFRDEIERLLMAVHGHAETRPSALLFIDLDQFKQVNDTLGHP 392

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN-SQ 207
            GD+++  ++D+L  +     FV R GG+EF       +S++++A+LA   R+I++  S+
Sbjct: 393 CGDQLLCDVADRLREMLRPEDFVARFGGDEFVVFQQHIASKEDSALLA---RRIVDRLSE 449

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +     + I  S GIA          ++  AD ALY AK  GR    CF
Sbjct: 450 RYLIDHHVVEIGASIGIAVTAPGVKADVLLKNADMALYRAKADGRG-TFCF 499


>gi|307293251|ref|ZP_07573097.1| diguanylate cyclase/phosphodiesterase [Sphingobium chlorophenolicum
           L-1]
 gi|306881317|gb|EFN12533.1| diguanylate cyclase/phosphodiesterase [Sphingobium chlorophenolicum
           L-1]
          Length = 647

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 16/197 (8%)

Query: 73  IISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------S 124
           I   T  ++L  + G   K +L I + R   L+R D L+G+ N  A    L        S
Sbjct: 182 ITKTTHRIVLEALQGKYEKSQLAIKFER---LARFDSLTGVENRMAMQMRLRELFDGRRS 238

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
             + +++ + D+D FK+IND+ GH +GD+++  ++++L         V R GG+EF    
Sbjct: 239 DRDAMAVFWMDLDRFKEINDSLGHMIGDQLLCRVAERLSHALDGRGHVARFGGDEFVLIC 298

Query: 185 LGSSEQEAAILAND-LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQ 242
            G+    A  +A+D + +   + Q+    G  + +T S GIA      +    ++  AD 
Sbjct: 299 PGADRPAAEQIADDVMAEFAHDFQVG---GYQLGVTASMGIAVAPEDGQDSDELLQHADM 355

Query: 243 ALYVAKKSGRNRVVCFS 259
           ALY AK +GRNR   F+
Sbjct: 356 ALYQAKHAGRNRHAQFA 372


>gi|299530043|ref|ZP_07043470.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           S44]
 gi|298722023|gb|EFI62953.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           S44]
          Length = 435

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 78/161 (48%), Gaps = 21/161 (13%)

Query: 107 DCLSGLLNHSAFISSLGSYN--------EKLSI----VFFDIDYFKQINDNFGHPVGDKV 154
           D L+GL N SA     GSY         E+  +    +  D+D FKQ+ND FGH  GD+V
Sbjct: 252 DDLTGLPNRSA-----GSYELENCQRIAERQGVPYALIMCDVDLFKQVNDQFGHEAGDQV 306

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  L     +   V R GGEEF     G   Q A  LA  LR+ I +     S   
Sbjct: 307 LQQIAKVLRSTVRSSEHVARWGGEEFLIIVPGVGLQAALELAERLRRSIASH----SYAA 362

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  IT+S G+      E  + ++ R D ALY AK SGRN+V
Sbjct: 363 AGTITMSFGVGSWQAGEASAQLLRRTDMALYRAKSSGRNQV 403


>gi|227112657|ref|ZP_03826313.1| hypothetical protein PcarbP_06834 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 307

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 7/158 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF-DIDYFKQINDNFGHPVGDKVIAF 157
           RI   S  D L+ L N   FI+ L     K   +F  DID FK IND +GH  GD+V++ 
Sbjct: 145 RIQSFS--DELTQLPNRRFFINELKKLEAKTPYLFIIDIDNFKVINDKYGHTKGDEVLSK 202

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
               L     + +   R+GGEEFA      ++  A  LA   R++++N+   I      H
Sbjct: 203 FGHILSRFDNSEVVATRIGGEEFAIILYAGTQDRAEKLA---REVLKNANKIIIKNMH-H 258

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +++S G  ++  +EP    + R D ALY AK +G+ +V
Sbjct: 259 LSVSIGAGKKQPQEPTEHFMKRVDIALYQAKNTGKGKV 296


>gi|34495842|ref|NP_900057.1| hypothetical protein CV_0387 [Chromobacterium violaceum ATCC 12472]
 gi|34330267|gb|AAQ58065.2| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 334

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 97/185 (52%), Gaps = 11/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           S L+E+ +    + + +  D L+GL N           ++ + + + +++++  D D+FK
Sbjct: 149 SHLREIELLQQGLREQALRDPLTGLFNRRHLDDILPRVLAHMLALHREVAVLMVDADHFK 208

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD V+  L   L   F +   V R GGEEF     G++ + A   A  LR
Sbjct: 209 RINDTYGHRCGDAVLTALGACLSDHFRSGDIVCRYGGEEFFVLLPGATLEAAYAKAEGLR 268

Query: 201 KIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + +    +  + G S+ +T+S G+A  C  H     +++  AD+ALY AK+ GR+RV   
Sbjct: 269 RAVGERPME-ALGHSLAVTLSIGLAL-CPLHGSDAESVVRAADEALYQAKRQGRDRVCVA 326

Query: 259 SDIEN 263
           + +++
Sbjct: 327 ARLQS 331


>gi|50122121|ref|YP_051288.1| hypothetical protein ECA3199 [Pectobacterium atrosepticum SCRI1043]
 gi|49612647|emb|CAG76097.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043]
          Length = 307

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 80/158 (50%), Gaps = 7/158 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF-DIDYFKQINDNFGHPVGDKVIAF 157
           RI   S  D L+ L N   FI+ L     K   +F  DID FK IND +GH  GD++++ 
Sbjct: 145 RIQSFS--DELTQLPNRRFFINELKKLEAKTPYLFIIDIDNFKVINDKYGHTKGDEILSK 202

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
               L     + +   R+GGEEFA      ++  A  LA   R++++N+   I      H
Sbjct: 203 FGHILSRFDNSEVVATRIGGEEFAIILYAGTQDRAEKLA---REVLKNANKIIIKNMH-H 258

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +++S G  ++  +EP    + R D ALY AK +G+ +V
Sbjct: 259 LSVSIGAGKKQPQEPTEHFMKRVDVALYQAKNTGKGKV 296


>gi|154248589|ref|YP_001419547.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Xanthobacter autotrophicus Py2]
 gi|154162674|gb|ABS69890.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Xanthobacter autotrophicus Py2]
          Length = 864

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 88/177 (49%), Gaps = 22/177 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
           +RI+ L+ ID L+GL N    I SLG         +E L+++  D+D+FK +N+  GH  
Sbjct: 408 DRIATLASIDALTGLPNRRRLIESLGDLIAEAAERDEPLAVMMLDVDHFKDVNETLGHST 467

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+++  ++ +L     T   VGR GG+EF       + +EAA +A  L        I+ 
Sbjct: 468 GDELLVEMARRLQAQLRTGDTVGRTGGDEFVVVVHDCAAEEAARIARRL--------IDY 519

Query: 211 SSGP----SIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            S P     +H+T+SA +       H     T++  AD A+Y AK   R R   F++
Sbjct: 520 LSAPIPAQKLHLTMSASVGIALYPQHGTSAETLLRHADTAMYEAKSKARGRFQFFTE 576


>gi|87122329|ref|ZP_01078210.1| sensory box protein [Marinomonas sp. MED121]
 gi|86162304|gb|EAQ63588.1| sensory box protein [Marinomonas sp. MED121]
          Length = 729

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           H A+++    Y    SIV FD+DYFK+ ND +GH  GD+ +  + D +         + R
Sbjct: 587 HQAYLTHKTLY----SIVLFDVDYFKKFNDFYGHQAGDEALIQVVDCIGEHLKKADKIYR 642

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPI 233
            GGEEF       ++ EA  +A +L + +    I   +     +T+SAG AE     +  
Sbjct: 643 YGGEEFVCVLPNVTQDEALTMAKNLIEKVAALTIEHQASHYQLVTVSAGCAEVMAQDKTW 702

Query: 234 STIIYRADQALYVAKKSGRNRV 255
             ++ R+D+ALY AK +GRNR 
Sbjct: 703 EQVVSRSDKALYSAKDAGRNRA 724


>gi|194437157|ref|ZP_03069256.1| sensory box-containing diguanylate cyclase [Escherichia coli 101-1]
 gi|253773658|ref|YP_003036489.1| diguanylate cyclase with PAS/PAC sensor [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161420|ref|YP_003044528.1| putative diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli B str. REL606]
 gi|194424140|gb|EDX40128.1| sensory box-containing diguanylate cyclase [Escherichia coli 101-1]
 gi|242377117|emb|CAQ31845.1| diguanylate cyclase, transcriptional modulator [Escherichia coli
           BL21(DE3)]
 gi|253324702|gb|ACT29304.1| diguanylate cyclase with PAS/PAC sensor [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973321|gb|ACT38992.1| predicted diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli B str. REL606]
 gi|253977534|gb|ACT43204.1| predicted diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli BL21(DE3)]
 gi|323962408|gb|EGB57991.1| GGDEF domain-containing protein [Escherichia coli H489]
 gi|323973549|gb|EGB68734.1| GGDEF domain-containing protein [Escherichia coli TA007]
          Length = 410

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409


>gi|331657395|ref|ZP_08358357.1| putative GGDEF domain protein [Escherichia coli TA206]
 gi|331055643|gb|EGI27652.1| putative GGDEF domain protein [Escherichia coli TA206]
          Length = 410

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLALAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409


>gi|307137983|ref|ZP_07497339.1| putative diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli H736]
          Length = 410

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409


>gi|307718267|ref|YP_003873799.1| hypothetical protein STHERM_c05610 [Spirochaeta thermophila DSM
           6192]
 gi|306531992|gb|ADN01526.1| hypothetical protein STHERM_c05610 [Spirochaeta thermophila DSM
           6192]
          Length = 387

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 14/164 (8%)

Query: 106 IDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D  +G+ N S F+  L         Y   L ++  D+D+FK  ND +GH  GD+V+  +
Sbjct: 206 MDFKTGIYNASFFMRRLEEELYRVKRYGGHLGLIILDVDHFKLFNDRYGHLAGDEVLISI 265

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  +           R GGEEF     G++   A I+A  +R  IE  ++       +H+
Sbjct: 266 ARNIKQNLRKGDVAARYGGEEFVVLLPGANRNAAYIVAERVRHSIELMKVYFED-KILHV 324

Query: 219 TISAGIAERCHK----EPISTIIYRADQALYVAKKSGRNRVVCF 258
           T+S G+   C +    +P   +I  ADQALY++K+ GRNR   +
Sbjct: 325 TVSVGVTS-CTRYRLLDP-RKLIEEADQALYLSKERGRNRTTVY 366


>gi|298530375|ref|ZP_07017777.1| response regulator receiver modulated diguanylate cyclase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509749|gb|EFI33653.1| response regulator receiver modulated diguanylate cyclase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 301

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 87/174 (50%), Gaps = 17/174 (9%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL------GSYN-EKLSIVFFDIDYFKQINDNFGH 148
            Y  + Q + +D L+ + N   F   L      G  N   LS+   DID FKQ ND++GH
Sbjct: 128 KYKLLEQKANLDGLTEIPNRRCFEEVLAREWQRGKRNASPLSVAMLDIDCFKQYNDHYGH 187

Query: 149 PVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GD    +V   + D L        + GR GGEEF      +  + + ++A  +R  IE
Sbjct: 188 QTGDIALQRVARSIMDSLKRASD---YAGRYGGEEFVILMPETPLESSLMVAERIRSDIE 244

Query: 205 NSQINIS-SGPSIHITISAGIAE-RCHKEP-ISTIIYRADQALYVAKKSGRNRV 255
           +  I  + S  + H+T+S G+A  R + E     II RADQ +Y AK+SGRNRV
Sbjct: 245 SLAIPHALSSIAPHLTVSIGVASTRDYAESGPEEIIKRADQHMYTAKQSGRNRV 298


>gi|157155005|ref|YP_001462650.1| sensory box-containing diguanylate cyclase [Escherichia coli
           E24377A]
 gi|191165081|ref|ZP_03026925.1| sensory box-containing diguanylate cyclase [Escherichia coli B7A]
 gi|300822490|ref|ZP_07102629.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
 gi|300900112|ref|ZP_07118306.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1]
 gi|309796956|ref|ZP_07691357.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
 gi|331677130|ref|ZP_08377826.1| putative GGDEF domain protein [Escherichia coli H591]
 gi|332279459|ref|ZP_08391872.1| sensory box-containing diguanylate cyclase [Shigella sp. D9]
 gi|157077035|gb|ABV16743.1| sensory box-containing diguanylate cyclase [Escherichia coli
           E24377A]
 gi|190904853|gb|EDV64558.1| sensory box-containing diguanylate cyclase [Escherichia coli B7A]
 gi|300356391|gb|EFJ72261.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1]
 gi|300524906|gb|EFK45975.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
 gi|308119484|gb|EFO56746.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
 gi|323185491|gb|EFZ70852.1| hypothetical protein ECOK1357_0853 [Escherichia coli 1357]
 gi|331075819|gb|EGI47117.1| putative GGDEF domain protein [Escherichia coli H591]
 gi|332101811|gb|EGJ05157.1| sensory box-containing diguanylate cyclase [Shigella sp. D9]
          Length = 430

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|194425990|ref|ZP_03058546.1| sensory box-containing diguanylate cyclase [Escherichia coli B171]
 gi|218553900|ref|YP_002386813.1| putative diguanylate cyclase [Escherichia coli IAI1]
 gi|218694916|ref|YP_002402583.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein
           [Escherichia coli 55989]
 gi|260843689|ref|YP_003221467.1| putative diguanylate cyclase [Escherichia coli O103:H2 str. 12009]
 gi|260855040|ref|YP_003228931.1| putative diguanylate cyclase [Escherichia coli O26:H11 str. 11368]
 gi|260867789|ref|YP_003234191.1| putative diguanylate cyclase [Escherichia coli O111:H- str. 11128]
 gi|293414667|ref|ZP_06657316.1| ydaM protein [Escherichia coli B185]
 gi|194416045|gb|EDX32311.1| sensory box-containing diguanylate cyclase [Escherichia coli B171]
 gi|218351648|emb|CAU97363.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein
           [Escherichia coli 55989]
 gi|218360668|emb|CAQ98229.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein
           [Escherichia coli IAI1]
 gi|257753689|dbj|BAI25191.1| predicted diguanylate cyclase [Escherichia coli O26:H11 str. 11368]
 gi|257758836|dbj|BAI30333.1| predicted diguanylate cyclase [Escherichia coli O103:H2 str. 12009]
 gi|257764145|dbj|BAI35640.1| predicted diguanylate cyclase [Escherichia coli O111:H- str. 11128]
 gi|291434725|gb|EFF07698.1| ydaM protein [Escherichia coli B185]
 gi|320186795|gb|EFW61516.1| hypothetical protein SGF_01001 [Shigella flexneri CDC 796-83]
          Length = 410

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409


>gi|126090207|ref|YP_001041688.1| hypothetical protein Sbal_4570 [Shewanella baltica OS155]
 gi|126174500|ref|YP_001050649.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS155]
 gi|125997705|gb|ABN61780.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS155]
 gi|125999863|gb|ABN63933.1| hypothetical protein Sbal_4570 [Shewanella baltica OS155]
          Length = 749

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 9/162 (5%)

Query: 107 DCLSGLLNHSAF---ISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N +A    I SL    S     S +  D+D FKQ+ND  GH  GD ++  +  
Sbjct: 318 DSLTGLANRNALFKLIQSLITSDSLTPGFSFMLMDLDNFKQVNDTHGHDKGDALLVQVVR 377

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           Q+       M   RLGG+EFA    G  +++E A LA  + K +    + ++ G  ++ +
Sbjct: 378 QICECLNDTMVFARLGGDEFALLLPGIVNQKELAQLAETINKHVAKRYV-LADGKGVYSS 436

Query: 220 ISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +S GIA        +  ++  ADQA+Y++K +GRNR   F++
Sbjct: 437 VSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTE 478


>gi|295699114|ref|YP_003607007.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
 gi|295438327|gb|ADG17496.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
          Length = 607

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 11/181 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           +  L    + +  L+  D L+GL N   F+  L +         E L+++F D+D FKQI
Sbjct: 396 MDALHSKQSELVHLASHDVLTGLPNRMLFMQKLENAIEEARFRREGLAVLFVDLDRFKQI 455

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH VGDKV+  ++ +L  V      V RLGG+EF    L    + A +      +I
Sbjct: 456 NDQFGHSVGDKVLVAVARRLKDVLYAGDVVARLGGDEF--IVLIEGRRAAEVTPEIAERI 513

Query: 203 IENSQINIS-SGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++     +S  G S+ +  S GI+E  H       ++  AD A+Y AK  GR   + + D
Sbjct: 514 MDALNKTLSVDGNSMTVGASIGISEFPHDSGNAEELLLNADAAMYAAKSGGRCGYLRYQD 573

Query: 261 I 261
           +
Sbjct: 574 L 574


>gi|187922244|ref|YP_001893886.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
 gi|187713438|gb|ACD14662.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
          Length = 373

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 78/159 (49%), Gaps = 16/159 (10%)

Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N  AF                 L+++  D+D+FK IND +GH VGDKV+    
Sbjct: 207 DPLTGVFNRRAFAEIYQREYQVAQRTGGTLALLIVDLDHFKAINDKYGHDVGDKVLVDFC 266

Query: 160 DQ--LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            +   V+V GT M   RLGGEEFA    G S ++A+  A  +R  +     N   G    
Sbjct: 267 RRANAVLVNGTSM--ARLGGEEFAVLLRGVSLEDASAQAERIRLSLLQDGDNELPG---- 320

Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
            T S G+A        +  ++  AD ALY AK+ GRNRV
Sbjct: 321 YTCSVGVATTAKDGSALEQLLRVADDALYHAKREGRNRV 359


>gi|119469568|ref|ZP_01612472.1| GGDEF domain protein [Alteromonadales bacterium TW-7]
 gi|119447103|gb|EAW28373.1| GGDEF domain protein [Alteromonadales bacterium TW-7]
          Length = 313

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVI 155
           L+ ID L+GL N    ++ L  +   L+       ++  D+D FK++ND +GH  GD+ +
Sbjct: 152 LATIDPLTGLPNRRFTMNKLSEFKLALTKEQTPFVLILCDVDNFKKVNDEYGHSFGDEAL 211

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L++ L           R GGEEF  A       +   ++N +   ++   +N +S  S
Sbjct: 212 IHLANILKQHIPNNAVASRWGGEEFLIAIPNVFNAKGVEISNKIHAALKQFPVN-TSFAS 270

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + +TIS G+ +    + I   I RAD+ LY AK+ G+NR 
Sbjct: 271 LSLTISMGVVQSHESDSIDIDIKRADELLYKAKEQGKNRT 310


>gi|92113441|ref|YP_573369.1| diguanylate cyclase [Chromohalobacter salexigens DSM 3043]
 gi|91796531|gb|ABE58670.1| diguanylate cyclase [Chromohalobacter salexigens DSM 3043]
          Length = 608

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 107 DCLSGLLNHSAFISSLG---SYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      +L    +  E+    L ++  DID+FK IND++GH +GD+ +  ++
Sbjct: 447 DALTGLYNRRFLDETLARELARAERQAVPLCVLMLDIDHFKPINDDYGHALGDRALVAVA 506

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L         V R GGEEF     G+    A    + LR+ +    +  +    I +T
Sbjct: 507 ELLNAHVRRDDIVCRYGGEEFVIIMPGAGLDAAQRRGDHLRRCVSALDVEANVPAPIRLT 566

Query: 220 ISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +S G+A  C   H +    +++ AD ALY AK+ GRNR+   S
Sbjct: 567 VSLGLA--CYPQHGDNAEHLLHSADMALYEAKQGGRNRLTIAS 607


>gi|325920713|ref|ZP_08182619.1| diguanylate cyclase with GAF sensor [Xanthomonas gardneri ATCC
           19865]
 gi|325548765|gb|EGD19713.1| diguanylate cyclase with GAF sensor [Xanthomonas gardneri ATCC
           19865]
          Length = 356

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 82/162 (50%), Gaps = 13/162 (8%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GL N  AF ++L +  E+       LS+   D+D+FK +ND  GH  GD V+ 
Sbjct: 200 TRTDPLTGLPNRRAFAAALAAATEQTRAAGQPLSVALLDVDHFKTVNDVHGHDQGDVVLR 259

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            LS  L         + R GGEEF          +A +    LR+ +    I      ++
Sbjct: 260 ELSALLRAHVAGAGTIARYGGEEFVLLLPNVDLLQARVQCEYLRQSVAVMTI------AL 313

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +T+S G+A    +E +  +I RADQALY AK+ GR++VV  
Sbjct: 314 PVTVSIGVATLHPQENVEAVIKRADQALYAAKRGGRDQVVAL 355


>gi|320180216|gb|EFW55151.1| hypothetical protein SGB_02534 [Shigella boydii ATCC 9905]
          Length = 410

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409


>gi|326319510|ref|YP_004237182.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323376346|gb|ADX48615.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 357

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 11/175 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIN 143
           +E+    +++ + +  D L+GL N        +A I+  G+    LS++  DID+FK++N
Sbjct: 173 EEIRALQDQLQEQAMRDPLTGLYNRRHLDATLAARIAQCGARGLPLSLLMIDIDHFKRVN 232

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD ++  L+  L           R GGEEF      +    A   A  LR+  
Sbjct: 233 DTHGHAAGDAMLQALAQLLQRHVRVQDLACRHGGEEFVLLLPETPLTIARERAEALRQAF 292

Query: 204 ENSQINISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E  Q+    GP ++  T+S G++    H +    ++ RAD+ALY AK  GRNRV 
Sbjct: 293 EALQVR--HGPDALSTTLSCGVSAFPQHADEPHALLARADEALYSAKVQGRNRVA 345


>gi|264678089|ref|YP_003277996.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262208602|gb|ACY32700.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 609

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 86/170 (50%), Gaps = 7/170 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           + L+  D L+GL N  A   +L       + L++ F D+D FKQ+ND  GH  GD+V+  
Sbjct: 440 NHLANHDALTGLANRRALEETLNQELADGQMLAVCFMDLDGFKQVNDTQGHDAGDEVLRV 499

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGPS 215
           ++ +L         V RLGG+EF    + L +  +  +++   +  +     I ++ G  
Sbjct: 500 VAARLTAQARAGDCVARLGGDEFVVLLSGLHTPGEAMSVMKRCMEAV--RQPIALNGGVM 557

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           + +  S GI+        + ++  AD+A+Y AK +G+ R+V  SD+  ++
Sbjct: 558 VQVGSSIGISISTADSSSANLMQSADEAMYSAKHAGKGRIVQHSDLSQDS 607


>gi|255100052|ref|ZP_05329029.1| putative signaling protein [Clostridium difficile QCD-63q42]
 gi|255305939|ref|ZP_05350111.1| putative signaling protein [Clostridium difficile ATCC 43255]
          Length = 383

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
            Y  +   +  D L+ + N   F         + + ++K ++   D+D FK+INDNFGHP
Sbjct: 208 KYEELRTRAESDSLTNIYNKGTFEKLVEETIVMNTGDKKDALFIIDLDDFKEINDNFGHP 267

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQI 208
            GD V+   +D++   FG+   VGR+GG+EF        +E      A +L +++ ++  
Sbjct: 268 FGDFVLKTFADKIQTSFGSKDLVGRIGGDEFVVYMQDYVTEVNLHKKAKELNRVLSDNYT 327

Query: 209 NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260
           ++S   S   ++S GIA R  ++  S   +   AD+ALY  K SG+N    F +
Sbjct: 328 DLSF--SFDASVSIGIA-RYPQDGTSFFELFKNADRALYSIKASGKNSYCLFEE 378


>gi|110641574|ref|YP_669304.1| hypothetical protein ECP_1394 [Escherichia coli 536]
 gi|254792934|ref|YP_003077771.1| putative diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli O157:H7 str. TW14359]
 gi|261224335|ref|ZP_05938616.1| predicted diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257411|ref|ZP_05949944.1| predicted diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli O157:H7 str. FRIK966]
 gi|161788956|sp|Q8X8Q3|YDAM_ECO57 RecName: Full=Uncharacterized protein ydaM
 gi|110343166|gb|ABG69403.1| hypothetical protein YdaM [Escherichia coli 536]
 gi|254592334|gb|ACT71695.1| predicted diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli O157:H7 str. TW14359]
          Length = 410

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409


>gi|332529867|ref|ZP_08405819.1| diguanylate cyclase/phosphodiesterase [Hylemonella gracilis ATCC
           19624]
 gi|332040661|gb|EGI77035.1| diguanylate cyclase/phosphodiesterase [Hylemonella gracilis ATCC
           19624]
          Length = 1018

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 51/159 (32%), Positives = 82/159 (51%), Gaps = 9/159 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N   F   L  + ++        +++FFD+D FK IND FGH  GD V+
Sbjct: 585 LAERDALTGLFNRRRFEDELARFIQESQRRHRHGALLFFDLDEFKHINDTFGHRAGDAVL 644

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++ ++  +      + RLGG+EFA     + ++EA  LA  + + I      +  G +
Sbjct: 645 IRVASEVGALTRRNELLCRLGGDEFAVLMPDARQEEAEQLAERIVRAIALIPFRL-DGQN 703

Query: 216 IHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253
           + +T S GIA   H       ++  AD A+Y AK+SG+N
Sbjct: 704 LRLTSSLGIALYPHGSVSAEELVAHADTAMYQAKESGKN 742


>gi|325969865|ref|YP_004246056.1| diguanylate cyclase [Spirochaeta sp. Buddy]
 gi|324025103|gb|ADY11862.1| diguanylate cyclase [Spirochaeta sp. Buddy]
          Length = 507

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 68/125 (54%), Gaps = 2/125 (1%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +  FD+DYFKQIND +GH +GD+ +  LS  +  V  T   + R GG+EF        + 
Sbjct: 379 VALFDVDYFKQINDTYGHDIGDRCLMQLSKAIAQVICTEKSLFRWGGDEFLIICPFIPQD 438

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKK 249
           E   +   L +  +++ I +  G +I  TIS GI+      E    I+ RAD+ALY AK+
Sbjct: 439 ELDRVKKTLLETAKSTSI-VHEGITITFTISVGISSFVSSDESEEQILKRADKALYRAKQ 497

Query: 250 SGRNR 254
            GRNR
Sbjct: 498 LGRNR 502


>gi|319787502|ref|YP_004146977.1| diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466014|gb|ADV27746.1| diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1]
          Length = 365

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 81/159 (50%), Gaps = 13/159 (8%)

Query: 104 SRIDCLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GL N   +     ++LG   E+   LS+   D+D+FK IND+ GHP GD+V+ 
Sbjct: 209 TRTDQLTGLPNRRGYGELMGAALGHAEEEGTPLSVAIVDLDHFKNINDSLGHPEGDRVLV 268

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++  L           R GGEEFA     +  ++A    + +   +  + ++  SG   
Sbjct: 269 RVAQVLAEQMKDVGLAARYGGEEFAPLLPATGLEQAREHCHAVCDAV--AAMDDCSG--- 323

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +T+S G+A+    E     + RAD ALY AK  GRNRV
Sbjct: 324 -VTVSIGVAQWQPGELPGQALSRADAALYRAKLGGRNRV 361


>gi|222033145|emb|CAP75885.1| Uncharacterized protein ydaM [Escherichia coli LF82]
          Length = 410

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409


>gi|220935617|ref|YP_002514516.1| putative diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996927|gb|ACL73529.1| putative diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 651

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 18/208 (8%)

Query: 67  ENLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           +  S+ I + TI   L  +SG +L      EL     ++   +  D L+GL+N   F + 
Sbjct: 443 QEYSVKITTSTIRAGLSRVSGCVLVIHDVTELRTLARQLKFQAAHDPLTGLVNRREFETR 502

Query: 122 L-----GSYNEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L     GS     +  ++F D+D+FK IND  GH  GD+V+  ++D L     +     R
Sbjct: 503 LSRAVDGSQKSGQTHVLIFLDLDWFKAINDTLGHAAGDQVLREVADMLERQVRSTDTAAR 562

Query: 175 LGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKE 231
           +GG+EF    L + E EA I +A  LR  I      +S G +  + +S G+   +R    
Sbjct: 563 IGGDEFGILLL-NCELEAGIAVAEKLRDAIAGYSY-VSGGETYRVGVSQGLVLIDR-QSG 619

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
            +  I+  AD+A Y AK+ GRNR   +S
Sbjct: 620 NLGAILKAADEACYTAKEHGRNRYHVYS 647


>gi|134093839|ref|YP_001098914.1| hypothetical protein HEAR0586 [Herminiimonas arsenicoxydans]
 gi|133737742|emb|CAL60787.1| conserved hypothetical protein; putative GGDEF and Cyclic
           nucleotide-binding domains [Herminiimonas
           arsenicoxydans]
          Length = 322

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 77/162 (47%), Gaps = 8/162 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           QLS +D L+GL N +     L    E+       LS++  D+DYFK+ ND +GH +GD  
Sbjct: 159 QLSMLDGLTGLYNRAWLNDKLAELVEEAHHAGRPLSLIMIDLDYFKKFNDQYGHQMGDHA 218

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQINISSG 213
           +   +  L        F  R GGEE       S+     ++A  L  ++ E         
Sbjct: 219 LRVAAGVLNAALRPSDFAVRYGGEELTVILPDSNATTGRMVAQRLCERMREAVVFEDMHV 278

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           P  H+T S GIA    +     ++ RAD ALY AK++GRN++
Sbjct: 279 PLPHLTASFGIATLDAQHDQEDLVTRADAALYRAKEAGRNQI 320


>gi|152994177|ref|YP_001339012.1| response regulator receiver modulated diguanylate cyclase
           [Marinomonas sp. MWYL1]
 gi|150835101|gb|ABR69077.1| response regulator receiver modulated diguanylate cyclase
           [Marinomonas sp. MWYL1]
          Length = 306

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 90/183 (49%), Gaps = 15/183 (8%)

Query: 94  FISYNRI-SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
            I+ +RI  +LS ID L+ L N   +  ++ S        NE LS+   DID FKQ ND 
Sbjct: 123 LINQHRILERLSTIDPLTSLANRRKYEETIRSEWKLMEEINETLSLAVIDIDNFKQYNDF 182

Query: 146 FGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GDKV+  ++  L   F      V R GGEEF A    +S++EA    N     ++
Sbjct: 183 YGHAAGDKVLQKVAAILANNFKHNSNLVARYGGEEFVAIMPRTSKKEALQRLNKCISEVQ 242

Query: 205 NSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV----VCF 258
              I         +TISAG++     +     ++   AD+ALY+AK  G+N+V    V  
Sbjct: 243 EIAITCKKENDSVVTISAGVSSIIPNDGFKFESLFAAADEALYLAKYEGKNQVKWKNVTT 302

Query: 259 SDI 261
           SDI
Sbjct: 303 SDI 305


>gi|126698599|ref|YP_001087496.1| putative signaling protein [Clostridium difficile 630]
 gi|115250036|emb|CAJ67856.1| Two-component sensor histidine kinase [Clostridium difficile]
          Length = 537

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 16/176 (9%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
            Y  +   +  D L+ + N   F        + + G   + L I+  D+D FK+INDNFG
Sbjct: 362 KYEELRTRAESDSLTNIYNKGTFEKLVEETIVMNTGDKKDALFII--DLDDFKEINDNFG 419

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206
           HP GD V+   +D++   FG+   VGR+GG+EF        +E      A +L +++ ++
Sbjct: 420 HPFGDFVLKTFADKIQTSFGSKDLVGRIGGDEFVVYMQDYVTEVNLHKKAKELNRVLSDN 479

Query: 207 QINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260
             ++S   S   ++S GIA R  ++  S   +   AD+ALY  K SG+N    F +
Sbjct: 480 YTDLSF--SFDASVSIGIA-RYPQDGTSFFELFKNADRALYSIKASGKNSYCLFEE 532


>gi|160873802|ref|YP_001553118.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160859324|gb|ABX47858.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|315266026|gb|ADT92879.1| diguanylate cyclase [Shewanella baltica OS678]
          Length = 466

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 83/177 (46%), Gaps = 14/177 (7%)

Query: 92  ELFISYNR----ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            L+++  R    + Q S  D L+GL N     S L         + E L ++  D+D+FK
Sbjct: 273 RLYVATQRANESLYQQSVKDTLTGLFNRRYLESQLAIHIDHAKRHKEPLCLLVLDVDHFK 332

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND  GH  GD  +  ++ QL      P  F+ R GGEEF      +  ++   +A  L
Sbjct: 333 AFNDQHGHLAGDDCLVTVAKQLEQSLYRPADFIARYGGEEFIVVLPHTDAKDGMQIAERL 392

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRV 255
           R  +   +I    G  + +TIS G A   H E  + +++  AD ALY AK +GRN V
Sbjct: 393 RLNVSAEKIEY-QGQLLSVTISIGCAVLRHSEETAQSLLIAADSALYQAKAAGRNCV 448


>gi|77917713|ref|YP_355528.1| putative sensory transduction system, regulatory protein
           [Pelobacter carbinolicus DSM 2380]
 gi|77543796|gb|ABA87358.1| putative sensory transduction system, regulatory protein
           [Pelobacter carbinolicus DSM 2380]
          Length = 536

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 14/177 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           EL  +  R++ LS  D L+G+ N  +F   L    ++       LS++  DID+FK  ND
Sbjct: 347 ELDEANRRLASLSLTDGLTGIANRRSFDDHLAQEWKRALRDRHPLSLIMVDIDHFKAYND 406

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  L  V   P   V R GGEEF A  L  ++  A  L    R  +
Sbjct: 407 YYGHLAGDDCLRQVARMLQSVVARPGDLVARYGGEEF-ALILPQTDHGAKSLGESCRAAV 465

Query: 204 ENSQINISSGP-SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              +I   + P    +T+S G+A        +P S +I  ADQA+Y AK  GR+ VV
Sbjct: 466 AGGKIPHHASPVKPVVTVSVGVATMIPHVEDDP-SQLIKAADQAMYRAKLLGRDHVV 521


>gi|89108189|ref|AP_001969.1| predicted diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli str. K-12 substr. W3110]
 gi|90111253|ref|NP_415857.2| diguanylate cyclase, csgD regulator [Escherichia coli str. K-12
           substr. MG1655]
 gi|170081020|ref|YP_001730340.1| diguanylate cyclase domain-containing signalling protein
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238900576|ref|YP_002926372.1| putative diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli BW2952]
 gi|161789052|sp|P77302|YDAM_ECOLI RecName: Full=Probable diguanylate cyclase YdaM; Short=DGC
 gi|85674914|dbj|BAA14945.2| predicted diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli str. K12 substr. W3110]
 gi|87081881|gb|AAC74423.2| diguanylate cyclase, csgD regulator [Escherichia coli str. K-12
           substr. MG1655]
 gi|169888855|gb|ACB02562.1| predicted diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238862243|gb|ACR64241.1| predicted diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli BW2952]
 gi|260449525|gb|ACX39947.1| diguanylate cyclase with PAS/PAC sensor [Escherichia coli DH1]
 gi|309701642|emb|CBJ00949.1| putative signaling protein [Escherichia coli ETEC H10407]
 gi|315135982|dbj|BAJ43141.1| putative diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli DH1]
 gi|315619424|gb|EFU99968.1| uncharacterized protein ydaM [Escherichia coli 3431]
 gi|323937667|gb|EGB33935.1| GGDEF domain-containing protein [Escherichia coli E1520]
 gi|323942288|gb|EGB38459.1| GGDEF domain-containing protein [Escherichia coli E482]
          Length = 410

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409


>gi|119470911|ref|ZP_01613495.1| hypothetical protein ATW7_00210 [Alteromonadales bacterium TW-7]
 gi|119445933|gb|EAW27213.1| hypothetical protein ATW7_00210 [Alteromonadales bacterium TW-7]
          Length = 511

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 80/167 (47%), Gaps = 17/167 (10%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKL----------SIVFFDIDYFKQINDNFGHPVGDK 153
           S++D L+ L N +AF      YN ++          ++V  D+D+FK IND FGH  GD 
Sbjct: 350 SQLDGLTKLPNRAAFDER---YNHEMHLFNVQQSNVTLVVIDVDHFKSINDRFGHTAGDI 406

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  ++  L        F+ R GGEEF      ++   A      LRK+I++        
Sbjct: 407 TLQVIAKALQKSIRKSDFIARYGGEEFVLLMTETTVDNAVAPLEKLRKVIKSIPFKFKD- 465

Query: 214 PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I ITIS G  + +    PI     RAD ALY AK SGR+R +C S
Sbjct: 466 KQIEITISVGATQLKKGDTPIKA-FDRADDALYEAKNSGRDR-LCIS 510


>gi|322834528|ref|YP_004214555.1| diguanylate cyclase [Rahnella sp. Y9602]
 gi|321169729|gb|ADW75428.1| diguanylate cyclase [Rahnella sp. Y9602]
          Length = 364

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 22/240 (9%)

Query: 36  SIFIATVIFIANIFLFY-----------IGLTPFYGLEYILVENLSLVIISITISLLL-- 82
           SIF  + I +++ FL +           I L  F  +E IL   +SL +I + +  L+  
Sbjct: 108 SIFFISAIALSDNFLAFCLHAVPSTLCVIFLDDFQHVERILF-TVSLPLIGLWLHHLMLK 166

Query: 83  --GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDID 137
                +  ++  L+    + S LS +D L+GL N     + L +   + S   ++  DID
Sbjct: 167 RSDEFTRRMVSNLYSEREKFSDLSMLDPLTGLYNRRGLQNKLETLFNQDSGHYVMLLDID 226

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK  NDN+GH +GD+ +  +S  +     +   V R GGEEF        ++ A  +A 
Sbjct: 227 HFKAYNDNYGHTMGDQALVRVSAAIRDAVRSRDVVVRYGGEEFLVLMSNVKQEHAVRMAE 286

Query: 198 DLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++  +    I    +   S H+T+SAG+A     + I   + +AD +LY AK SGRN++
Sbjct: 287 RIQNKVLGLNIPHLFNVEVSTHVTVSAGLAALEDGDFIKA-LGKADASLYNAKNSGRNKI 345


>gi|289677667|ref|ZP_06498557.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
 gi|330901317|gb|EGH32736.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330941309|gb|EGH44169.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 332

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 2/129 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+ +  DID FK +ND +GH  GD V+  +++            GR+GGEEFAA   G +
Sbjct: 203 LAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCA 262

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVA 247
              A  +A  L++ I+      S G +  IT S G+      +P + T+  RAD A+Y A
Sbjct: 263 PDMAMQIAERLQREIQRQNFQ-SGGTTFSITASQGLTNLGADDPSLETLYGRADAAMYQA 321

Query: 248 KKSGRNRVV 256
           K+ G+N++V
Sbjct: 322 KRQGKNQIV 330


>gi|260893212|ref|YP_003239309.1| diguanylate cyclase/phosphodiesterase [Ammonifex degensii KC4]
 gi|260865353|gb|ACX52459.1| diguanylate cyclase/phosphodiesterase [Ammonifex degensii KC4]
          Length = 469

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 7/173 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           Y  +  L+  D L+GL N     + L           + +++F D+D FK +ND  GH  
Sbjct: 42  YRSLRFLATHDFLTGLPNRYLLEARLKKALARARRGHQGALLFLDLDNFKLVNDTLGHGA 101

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+ + F+ + L         + R+GG+EFA    G   +EA  +A  LR++++ + + I
Sbjct: 102 GDRALRFVVELLRRNLRKGDLLARVGGDEFAVLLEGVELEEARAVAERLRQVVDETPVVI 161

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             G + ++ +S GI     K  +   + RAD ALY AK+ G N  V     E+
Sbjct: 162 -DGHTFNLGLSIGITPLDGKMDVQKALGRADAALYAAKERGGNACVVVGPGED 213


>gi|168206892|ref|ZP_02632897.1| GGDEF domain protein [Clostridium perfringens E str. JGS1987]
 gi|170661676|gb|EDT14359.1| GGDEF domain protein [Clostridium perfringens E str. JGS1987]
          Length = 545

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 5/167 (2%)

Query: 99  RISQLSRI-DCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           R S+L  + D L  + N     ++I++L   +  +S +  D+DYFK  NDN+GH  GD +
Sbjct: 372 RDSKLDSLKDWLCNIYNRRFLDSYINNLKEKDLPISFLMIDVDYFKLYNDNYGHQAGDFI 431

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213
           +  ++  L         V R GGEEF     G+S+  +   A  +++ ++N  I    S 
Sbjct: 432 LKSIASVLEKNSRKEDIVARYGGEEFCVLLKGASKYSSINYAKRIKENLDNLNIKHKYSK 491

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            S H+T S GI     K  +   I  +D+ALY++K  GRN      D
Sbjct: 492 TSDHVTFSIGIYTTYTKNDLKNAIKFSDKALYISKTRGRNTYTYLED 538


>gi|166711280|ref|ZP_02242487.1| response regulator [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 494

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 100/200 (50%), Gaps = 16/200 (8%)

Query: 71  LVIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
           +V+ ++  +LLLG   ++    L+ +  +  ++S  + +D L+G+ N  AF   L     
Sbjct: 294 IVVAALGCALLLGVGIWLDLQ-LRRMHRNEAKLSTEAWVDALTGIANRRAFDDRLSRALQ 352

Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEE 179
                   LS++  D+D+FK  ND +GH  GD  +  ++  +         V  R GGEE
Sbjct: 353 DAIRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRVIAGTIAACSRRSEDVAARYGGEE 412

Query: 180 FAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIAE-RCHKEPIS--T 235
           F      +    A  LA+ +R  + E   +++SS  S H+T+S G+A     + P+S   
Sbjct: 413 FGMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGVATFEPGEAPLSPNA 472

Query: 236 IIYRADQALYVAKKSGRNRV 255
           I++ AD ALY AK+ GRNR 
Sbjct: 473 IVHDADSALYRAKQKGRNRT 492


>gi|86750359|ref|YP_486855.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
 gi|86573387|gb|ABD07944.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
          Length = 420

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 14/168 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
            ++S  +  D L+G+ N   F   L  +          L+++  D+D FK++ND +GH V
Sbjct: 239 TQLSAFALTDGLTGVGNRRDFDDKLQRFLTGQTNATTPLALLLIDVDRFKRLNDTYGHLV 298

Query: 151 GDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD+ +  L+  +  VV  +   V R GGEEFAA    +    A  +A  +R+ IE   ++
Sbjct: 299 GDQCLKLLATAIRCVVSRSGDVVARYGGEEFAAILPATDAATALAIAERIRRAIET--MD 356

Query: 210 ISSGPSIH----ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           ++  P +     ++I  GIA          +I  AD ALY AK+SGRN
Sbjct: 357 LAGLPKLDERPTVSIGVGIAASGTTMLPHALIEIADAALYAAKQSGRN 404


>gi|15801016|ref|NP_287032.1| hypothetical protein Z1527 [Escherichia coli O157:H7 EDL933]
 gi|15830525|ref|NP_309298.1| hypothetical protein ECs1271 [Escherichia coli O157:H7 str. Sakai]
 gi|195935283|ref|ZP_03080665.1| hypothetical protein EscherichcoliO157_02312 [Escherichia coli
           O157:H7 str. EC4024]
 gi|254792283|ref|YP_003077120.1| putative diguanylate cyclase [Escherichia coli O157:H7 str.
           TW14359]
 gi|12514390|gb|AAG55643.1|AE005302_6 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13360731|dbj|BAB34694.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|209748584|gb|ACI72599.1| hypothetical protein ECs1271 [Escherichia coli]
 gi|209748586|gb|ACI72600.1| hypothetical protein ECs1271 [Escherichia coli]
 gi|209748588|gb|ACI72601.1| hypothetical protein ECs1271 [Escherichia coli]
 gi|254591683|gb|ACT71044.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str.
           TW14359]
 gi|320643017|gb|EFX12218.1| putative diguanylate cyclase [Escherichia coli O157:H- str. 493-89]
          Length = 452

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +         + R+GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 404

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 405 SIGAVVTQGNALNPNEIYRLADNALYEAKETGRNKVV 441


>gi|87120483|ref|ZP_01076377.1| diguanylate cyclase (GGDEF domain) [Marinomonas sp. MED121]
 gi|86164126|gb|EAQ65397.1| diguanylate cyclase (GGDEF domain) [Marinomonas sp. MED121]
          Length = 363

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 102/206 (49%), Gaps = 12/206 (5%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS- 120
           + I+V NL+ +I    IS     + G + +    + + + +L+ +D L+G+ N    ++ 
Sbjct: 160 QQIIVRNLTFIITLAAISGATALVVGRLRR----ANSDLRKLAELDELTGIANRRKVLAD 215

Query: 121 SLGSYNEKL----SIVF--FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           ++  Y + +    S V+   D+D+FK+IND +GH  GD V+  ++ ++         +GR
Sbjct: 216 AVNIYADAVINMESCVYAIVDLDHFKKINDTYGHEAGDVVLKSVAAKMDETIRPGDKLGR 275

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPI 233
            GGEEF      +  +      + LR+ + +  I    G  + +T+S G+ A        
Sbjct: 276 YGGEEFVVIMPDTDIEHGLQEMDRLRQEVSDMLIETEMGVVVPVTLSVGLSAISLETNRY 335

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
             I+  AD ALY AK+ GRNRV  ++
Sbjct: 336 EEILAEADSALYSAKREGRNRVSAYT 361


>gi|296104979|ref|YP_003615125.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059438|gb|ADF64176.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 693

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 103/203 (50%), Gaps = 15/203 (7%)

Query: 64  ILVENLSLVIISIT--ISLLLGYISG--SILKELFISYNR-ISQLSRIDCLSGLLNH--- 115
           +LV  ++L I+ IT  +S+L   +    S+L       NR ++QL+  D L+ L N    
Sbjct: 216 VLVSVVALAILGITLLVSMLDARLQARTSLLASSLAEANRELAQLALQDTLTRLPNRILL 275

Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  I+         +++F D+D FK +ND +GH VGDK++  ++ +L++       
Sbjct: 276 EDRLDQAINKADREGTHFALMFMDLDGFKTVNDAYGHDVGDKLLVAVTQRLLLPLKGQYT 335

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK- 230
           + R+GG+EF   A      +AA LAN L + I +S  N+     + +T+S GIA   H  
Sbjct: 336 LARIGGDEFVLLAEVGGPDDAASLANALVRTI-DSPFNVDPYKLV-VTLSIGIALYPHDG 393

Query: 231 EPISTIIYRADQALYVAKKSGRN 253
           +    +++ AD A+Y  K  GRN
Sbjct: 394 KTDRELMFNADAAMYHTKHMGRN 416


>gi|110805762|ref|YP_689282.1| hypothetical protein SFV_1817 [Shigella flexneri 5 str. 8401]
 gi|110615310|gb|ABF03977.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 410

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 316 RPLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409


>gi|83643391|ref|YP_431826.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83631434|gb|ABC27401.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 826

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 39/229 (17%)

Query: 54  GLTPFYGLEYILVENL---------SLVIISITISLLLGYISGSILKELFISYNRISQLS 104
           GLT  YG   IL  N            +I+S+ I+            +   + +R+ QL+
Sbjct: 342 GLTDIYGRRRILQSNKIPFRFFGKPCALIVSVDIT------------DRVEAQSRVEQLA 389

Query: 105 RIDCLSGLLNHSAFISSL----------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
             D L+GL N + F   L          G+Y    +++  D+D FK IND+ GH VGD++
Sbjct: 390 FHDPLTGLPNRNLFYDRLTMDIARSRNHGAYG---ALLLIDLDNFKNINDSLGHSVGDEL 446

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDL--RKIIENSQINI 210
           +  ++  L       + VGRLGG+EF      LG + +EA   AN +  + + E S    
Sbjct: 447 LRNVAKNLRNCLDEEITVGRLGGDEFTVIMPELGRTPEEAEQNANLIAAKVLSELSTPFF 506

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCF 258
            +     +T S G+A    K+  + +I R AD AL+ AK  GRN+V  F
Sbjct: 507 FNTQEFTVTASMGVALYPDKDANTEVILRYADTALFQAKHEGRNKVTIF 555


>gi|84387369|ref|ZP_00990389.1| GGDEF domain protein [Vibrio splendidus 12B01]
 gi|84377818|gb|EAP94681.1| GGDEF domain protein [Vibrio splendidus 12B01]
          Length = 654

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 76/133 (57%), Gaps = 8/133 (6%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +S+V  D+D+FK++ND FGH +GD+V+  ++ ++         V R GGEEF     GS 
Sbjct: 521 ISLVILDLDHFKRVNDTFGHDIGDEVLVEVARRVKQHLFPNDVVARWGGEEFVMLLSGSI 580

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQA 243
           + E  +  N +R  I  + I+  SG S+ +T S G +     E+ +++     +  AD A
Sbjct: 581 DPEQQL--NVIRLAISETPIDTHSG-SLDLTTSIGASIGIAHEQLNQDTYKKYLKAADDA 637

Query: 244 LYVAKKSGRNRVV 256
           LY AK+SGRN+V+
Sbjct: 638 LYQAKESGRNQVI 650


>gi|307609672|emb|CBW99179.1| hypothetical protein LPW_09631 [Legionella pneumophila 130b]
          Length = 367

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 92/182 (50%), Gaps = 17/182 (9%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEK------LSIVFFDIDYFKQIN 143
           KEL IS  ++  ++  D L+GL N   F +     +N        LS+V  D D FK IN
Sbjct: 184 KELLISELKVMTIT--DSLTGLYNRRYFDTLFPQEFNRARRNQYFLSLVSIDADNFKLIN 241

Query: 144 DNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DN GHP GDKV+  ++D L  +F  +   + RLGG+EFA        ++   +   ++  
Sbjct: 242 DNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKDTISICQSIKNP 301

Query: 203 IENSQINISSGPS-----IHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255
            +   +N + G +      H+T+S GI     +  +S    I  AD+ALY AKK G+N++
Sbjct: 302 FKTENLNHNYGSNEQLLMSHVTLSIGIVYIHFESSVSIEHAITAADKALYQAKKKGKNQI 361

Query: 256 VC 257
           V 
Sbjct: 362 VV 363


>gi|317048561|ref|YP_004116209.1| diguanylate cyclase [Pantoea sp. At-9b]
 gi|316950178|gb|ADU69653.1| diguanylate cyclase [Pantoea sp. At-9b]
          Length = 389

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 118/259 (45%), Gaps = 38/259 (14%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL-------EY 63
           +W        +F P   +++  + F +        A IFL     TP +G         Y
Sbjct: 137 LWRARASLTVTFWPAQMLLWIHLLFHV--------ARIFLDDAVATPVHGAIGGSSFSVY 188

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----- 118
           +++E++ L +I +T ++L      +++ E     ++++ L   D L+ + N  A      
Sbjct: 189 VILESI-LFVIGLTFTIL------AMVNERTQIAHKLASLH--DPLTSVWNRRALFAQAE 239

Query: 119 --ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
             I+         + V FD+D+FK IND +GH  GD+V+         +        RLG
Sbjct: 240 KIIARRLRQQLPFTAVLFDLDHFKSINDRYGHQQGDRVLIDFCQIAQSLLPEEGQFARLG 299

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           GEEFAA   G SEQ   +      +I   +Q+++    +I  T+S G A    ++    T
Sbjct: 300 GEEFAAILPGDSEQAQMV----CERIRVATQLSLPD--NISYTVSIGYATSSQEDLHFPT 353

Query: 236 IIYRADQALYVAKKSGRNR 254
           ++  AD+ALY AK SGRNR
Sbjct: 354 LLALADEALYRAKASGRNR 372


>gi|212637035|ref|YP_002313560.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212558519|gb|ACJ30973.1| GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 344

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 24/194 (12%)

Query: 85  ISGSILKELFISYNR---ISQLSRIDCLSGLLNHSAFISSLGSYNE-------------- 127
           ISG  +K +   + +   + Q  R+  + GL N    IS+   ++E              
Sbjct: 152 ISGWFIKAVIRDFEKQKLVKQFKRLALIDGLTN----ISNRRHFDEILSQEVRVAERNHH 207

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALG 186
            LSI+  DID+FK++ND  GH  GD  +  +++ +      P   V R GGEEF  A   
Sbjct: 208 ALSIILLDIDFFKRLNDTLGHQAGDAQLIKIAEIISSAVNRPRDLVARYGGEEFVIALPN 267

Query: 187 SSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
           ++ + A  +A  ++ ++E +QI +  S  S  +T+S GIA+         +I  AD+ LY
Sbjct: 268 TNLEGAIRVAEKVKSLLEEAQIVHPCSDVSAQVTLSQGIAQWEPGMSRDQLIKAADRMLY 327

Query: 246 VAKKSGRNRVVCFS 259
            AK +GR+   CF 
Sbjct: 328 RAKSAGRDS-YCFE 340


>gi|197337560|ref|YP_002157973.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
 gi|197314812|gb|ACH64261.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
          Length = 345

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 122/272 (44%), Gaps = 33/272 (12%)

Query: 7   DFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIA--TVIFIANIFLFYIGLTPFYGLEYI 64
           D   IW  +  N+   SP   +I   + +SI +   + IF+    L     T       +
Sbjct: 82  DMTEIWQTYLLNIPEISPLPVII---VLYSIVMCGLSAIFV----LTRSNNTDLASYTCL 134

Query: 65  LVENLSLVIISIT-ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           L  +L+  + S+  IS  +  I+G +L    I+ +   +L+ ID L+G+    A  S + 
Sbjct: 135 LYSSLTFSLFSVDYISSTMFSIAGLLLLLYIITASH--ELAFIDQLTGIPGRRALESEMK 192

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                 +I   D+D+FK+ ND +GH  GD V+  ++  +    G    V R GGEEF   
Sbjct: 193 HLGRTYTIAMLDVDHFKKFNDTYGHDTGDDVLKLVASIMAQTGGNAK-VYRYGGEEFTVL 251

Query: 184 ALGSSEQEAAILANDLRKIIENSQI---NISSGPS-----------------IHITISAG 223
             G + +++     +LR+ I +  +   + S+ P                  +++TIS G
Sbjct: 252 FKGKTAKQSLEYLEELREDIADYDLIIRDTSTRPKDNKEGQAKRGKANKTKVVNVTISIG 311

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +A+         +I  AD+ALY AK+ GRN V
Sbjct: 312 VADSEDLRKPQLVIKAADEALYRAKEGGRNCV 343


>gi|192289382|ref|YP_001989987.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
 gi|192283131|gb|ACE99511.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
          Length = 502

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 21/172 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ +L+  D L+GL N   F +++ +        N  ++++  D D+FK  ND+FGH  
Sbjct: 328 RRLEELATTDPLTGLTNRRKFDAAIDTEWRRAIRQNTPIALLMIDADHFKAYNDSFGHQA 387

Query: 151 GDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD+++  ++  +   V      V R GGEEFA    G +   A  +A  +R+ +E    +
Sbjct: 388 GDQMLVGIAVCIADTVHRAGDCVARFGGEEFAVLLPGLTAPAAEAIAETIRRKVEEWS-D 446

Query: 210 ISSGPSIHITISAGIAERCHKEPIST-----IIYRADQALYVAKKSGRNRVV 256
           I  G    +T+S G+A      PI+      ++  AD+ALY AK+ GRNR V
Sbjct: 447 IEGG----VTVSIGVASTT---PIAAHQWYDLVEAADRALYAAKELGRNRCV 491


>gi|94500398|ref|ZP_01306930.1| hypothetical protein RED65_16276 [Oceanobacter sp. RED65]
 gi|94427433|gb|EAT12411.1| hypothetical protein RED65_16276 [Oceanobacter sp. RED65]
          Length = 1407

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 8/163 (4%)

Query: 99   RISQLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            RI  L+  D L+GL N    H A    +     +L+++F D+D FK IND  GHP GD+V
Sbjct: 968  RIQHLAYFDPLTGLPNRAQMHEALDRLMAKEESQLALLFIDLDRFKPINDTMGHPAGDQV 1027

Query: 155  IAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIEN-SQINIS 211
            +  ++ +L    G    V R+GG+EF    A L  +EQ    + +   +I+    Q    
Sbjct: 1028 LKEVASRLKEAVGAKNLVSRIGGDEFTVIMATLPETEQAIQTIIDVSERILHQMMQPFFI 1087

Query: 212  SGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRN 253
                ++++ S GIA         T + R AD A+Y AK  G+N
Sbjct: 1088 EDRQLYLSASVGIALYPENALSGTDLLRNADTAMYHAKAMGKN 1130


>gi|77918520|ref|YP_356335.1| sensory box histidine kinase [Pelobacter carbinolicus DSM 2380]
 gi|77544603|gb|ABA88165.1| sensory box histidine kinase [Pelobacter carbinolicus DSM 2380]
          Length = 581

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 11/163 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGD 152
           + +++  D L+GL N    +  L    E        LS +  D+D FK IND FGH  GD
Sbjct: 400 LRRIAITDDLTGLYNRGYLLKQLAGKIETAECQSGNLSTLLLDLDNFKWINDTFGHDFGD 459

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+   S            VGR GGEEF      +  ++  ++A  +RK I++ + +   
Sbjct: 460 TVLEKASAIFRSCLRGTDLVGRYGGEEFLVILPDTDLEKGQLIAEGIRKSIQSCRWDRE- 518

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ITIS G+ +    E +  ++ RAD+ LY AK  GRNR+
Sbjct: 519 --NFRITISGGLVQYA-GESVEMLLKRADKLLYQAKDLGRNRI 558


>gi|317049523|ref|YP_004117171.1| diguanylate cyclase [Pantoea sp. At-9b]
 gi|316951140|gb|ADU70615.1| diguanylate cyclase [Pantoea sp. At-9b]
          Length = 236

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 76/151 (50%), Gaps = 4/151 (2%)

Query: 107 DCLSGLLNHSAFISS--LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+ + N SA I    L   +   +++  DID+FK+IND FGHP+GDKVI  L  ++  
Sbjct: 85  DPLTAVWNRSAIIQRIMLTLAHGPAALIILDIDHFKKINDEFGHPMGDKVICELVSRVQA 144

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                  +GR+GGEEF          +A I+A  +   +  S + +   P   +T S G+
Sbjct: 145 HCPAEANIGRIGGEEFTVLLPHFRLSDAVIVAGAIHASLNASPLAVL--PGQLVTASLGV 202

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +         T+   AD ALY AK  GRNRV
Sbjct: 203 SYGKPGSDFETLYNNADAALYDAKNHGRNRV 233


>gi|271499536|ref|YP_003332561.1| diguanylate cyclase [Dickeya dadantii Ech586]
 gi|270343091|gb|ACZ75856.1| diguanylate cyclase [Dickeya dadantii Ech586]
          Length = 241

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 4/151 (2%)

Query: 107 DCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+ + N SA I  +      ++ +++  DID+FKQ+ND +GHP GD VI  L  ++  
Sbjct: 84  DPLTDVFNRSAIIDLVDHALEQDQAALIVLDIDHFKQVNDAYGHPTGDAVICSLIARIRD 143

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           V      +GR+GGEEF     G +   A  +A  +   + ++ +     P   +T S G+
Sbjct: 144 VLQGKGSIGRVGGEEFTILLDGYTLMAAVDIAEHIHASLNHTPLE--PLPDHQVTASFGV 201

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +         T+   AD ALY AK  GRNRV
Sbjct: 202 SWAPPHTGFDTLYGTADAALYRAKHQGRNRV 232


>gi|239907247|ref|YP_002953988.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239797113|dbj|BAH76102.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 290

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 95/201 (47%), Gaps = 31/201 (15%)

Query: 81  LLGYISGSILKELFISYNRISQ-------LSRIDCLSGLLNHSAFISSLGSY-------N 126
           L  +++  I    F    RI Q       LS  D L+ L N  AF   L +         
Sbjct: 67  LRDWMALPITANPFPYLTRIQQTLKELVFLSEHDPLTKLHNRGAFERILSAELIRSSRSG 126

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAA 184
           + L++V  D+D FK +ND +GHP GD+V+  +   L     T  +  R+GGEEFA     
Sbjct: 127 QPLALVLLDLDNFKTVNDTYGHPCGDRVLETMGALLAAEKRTYDYAARVGGEEFALILPG 186

Query: 185 LGSSEQEAAILANDLRKIIENSQ----INISSGPSIHITISAGIAERCHKEPIS----TI 236
           +G    E  +      ++IE+++    +       + +T+SAGIA  C K  ++     +
Sbjct: 187 VGMVRAEGIV-----ERLIESARTLRVVCDGVDTPLCVTLSAGIA--CTKGKVAIGWEKL 239

Query: 237 IYRADQALYVAKKSGRNRVVC 257
              AD+ALY AK +G++RV C
Sbjct: 240 YAMADEALYAAKAAGKDRVRC 260


>gi|291287632|ref|YP_003504448.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809]
 gi|290884792|gb|ADD68492.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809]
          Length = 490

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 80/168 (47%), Gaps = 8/168 (4%)

Query: 97  YNR-ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           YNR + +L+  D L+G  N   F       +       E  S++  DID FK IND  GH
Sbjct: 315 YNRRLERLAITDELTGSYNRREFSRIYDKAVQWYKKNEEPFSVILVDIDNFKIINDAKGH 374

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD VI  ++            + R GG+EF     G S   + I     R + ++ ++
Sbjct: 375 AAGDSVIKAVTRICKNSIRGNDLIARWGGDEFIMLIYGDSNTASTIAERIQRYMSQDEEL 434

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              +     IT+S GI+E    +   +I  RAD+ALY AK+SGRN+V+
Sbjct: 435 LTITSDIDDITLSIGISEYTVTDSEDSITIRADKALYSAKESGRNKVI 482


>gi|222056656|ref|YP_002539018.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. FRC-32]
 gi|221565945|gb|ACM21917.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. FRC-32]
          Length = 845

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 13/157 (8%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F+  L         YNE  +++F D+D FK IND+ GH  GDK++  +S
Sbjct: 425 DILTGLANRMLFMDHLALSISQGHRYNEIQAVMFLDLDRFKSINDSLGHAAGDKLLQLIS 484

Query: 160 DQLVVVFGTPMFVGRLGGEEF--AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            +L         V R+GG+E+      +   E   AI    L  + +   I+   G  +H
Sbjct: 485 GRLKECVRETDTVARIGGDEYNILITQMAHPEDATAIANKILSSMNKPFAID---GHQLH 541

Query: 218 ITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
           +TIS GI+      E   T++  AD ALY AK+ GRN
Sbjct: 542 VTISIGISLYPTDGEDAETLLKNADIALYHAKEQGRN 578


>gi|254560441|ref|YP_003067536.1| sensory box-containing diguanylate cyclase/phosphodiesterase;
           permease, PAS/PAC, GGDEF and EAL domains
           [Methylobacterium extorquens DM4]
 gi|254267719|emb|CAX23566.1| putative sensory box-containing diguanylate
           cyclase/phosphodiesterase; permease, PAS/PAC, GGDEF and
           EAL domains [Methylobacterium extorquens DM4]
          Length = 815

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 11/172 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I+ L+  D L+GL N + F    G           ++ +++ D+D FK++ND  GH  GD
Sbjct: 376 IAYLATRDPLTGLSNRAVFHDVAGEACTASMRGGPRVHLLYLDLDGFKKVNDTAGHCAGD 435

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++  ++D+L         V RLGG+EFA    G    EA ILA  +  I    +  +  
Sbjct: 436 DLLRQVADRLCASVDANAQVFRLGGDEFAILHRGRESAEAEILAEAV--IASLHRPYLIE 493

Query: 213 GPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF-SDIE 262
           G    I +S GIA        +  ++ +AD ALY AK++GR R  CF +D+E
Sbjct: 494 GMQAEIGVSIGIARAPQDATELQDLMRKADLALYTAKEAGRGRWQCFEADLE 545


>gi|253996593|ref|YP_003048657.1| diguanylate cyclase [Methylotenera mobilis JLW8]
 gi|253983272|gb|ACT48130.1| diguanylate cyclase [Methylotenera mobilis JLW8]
          Length = 364

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 104/203 (51%), Gaps = 19/203 (9%)

Query: 70  SLVIISITISLLL-GYISGSILKELFISYNRISQ----LSRIDCLSGLLNHSAF------ 118
           SLV++ + IS+LL  Y     L E   S   +++    L+  D L+ L N   F      
Sbjct: 163 SLVVVFLIISILLINYRRTISLFEHASSSQELAEEFGYLAMHDALTHLPNRRNFEQYLKK 222

Query: 119 -ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
            IS  G   +K+ +++ D+D FK IND +GH  GD  +     ++  V     F+ R+GG
Sbjct: 223 SISQAGRSKQKIGLLYMDLDGFKLINDQYGHDAGDDALVGAVAKINHVLRDSDFIARVGG 282

Query: 178 EEFAAAALG-SSEQEAAILANDLRKIIE--NSQINISSGPSIHITISAGIAERCHK-EPI 233
           +EFA  A   +   E  ILAN   +IIE  N+ +   +G  I + +S GIA    + + I
Sbjct: 283 DEFALVAHNFNDASELLILAN---RIIEALNTPVIKVTGTDIFMGVSIGIAIYPDQVKSI 339

Query: 234 STIIYRADQALYVAKKSGRNRVV 256
             +I  AD+A+Y AK +G+N+ V
Sbjct: 340 KALISAADEAMYKAKSTGKNQAV 362


>gi|218661629|ref|ZP_03517559.1| hypothetical protein RetlI_20116 [Rhizobium etli IE4771]
          Length = 306

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 83/180 (46%), Gaps = 15/180 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L +S  ++  L+  D L+G++N  AF        +     N   S++  DID FK  ND 
Sbjct: 118 LRLSAEQLRNLAETDGLTGIVNRRAFDEIFARETAGSARKNTPFSLLMVDIDRFKAYNDT 177

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GHP GD+ +  +S  L      P   V R GGEEF      +S + A I+A    + + 
Sbjct: 178 YGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFVVFLPDTSAKGAMIVAEQFARRLT 237

Query: 205 NSQINISSGPSIHITISAGIAERCH-----KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              I  S      +T S GI+  C      +   + ++  AD ALY AK  GRNR++  S
Sbjct: 238 KENILHSGSEFGRVTASIGIS--CATGATLRASPNRLLAEADTALYEAKTQGRNRILAHS 295


>gi|153000566|ref|YP_001366247.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella baltica OS185]
 gi|151365184|gb|ABS08184.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS185]
          Length = 749

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 9/162 (5%)

Query: 107 DCLSGLLNHSAF---ISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N +A    I SL    S     S +  D+D FKQ+ND  GH  GD ++  +  
Sbjct: 318 DSLTGLANRNALFKLIQSLITSDSLTPGFSFMLMDLDNFKQVNDTHGHDKGDALLVQVVR 377

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           Q+       M   RLGG+EFA    G  +++E A LA  + K +    + ++ G  ++ +
Sbjct: 378 QICECLNDTMVFARLGGDEFALLLPGIVNQKELAQLAETINKHVAKRYV-LADGKGVYSS 436

Query: 220 ISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +S GIA        +  ++  ADQA+Y++K +GRNR   F++
Sbjct: 437 VSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTE 478


>gi|114320525|ref|YP_742208.1| diguanylate cyclase with PAS/PAC sensor [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226919|gb|ABI56718.1| diguanylate cyclase with PAS/PAC sensor [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 302

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 11/159 (6%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL+N   F       I     Y    +++  DID+FK +ND +GH  GDKV+   +
Sbjct: 148 DPLTGLVNRYHFEELLAREIERGQRYGGGFALIMLDIDHFKAVNDTYGHLEGDKVLRRFA 207

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           ++L         + R GGEEF     G+    A  LA  +R  +   ++ +       +T
Sbjct: 208 EELTGKIRAADTLARWGGEEFMLLLPGTDIAGARALAEAIRVAVNGCRMPVPG----QVT 263

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +S G+    + E +  ++ R D+ALY AK +GR++VV  
Sbjct: 264 VSLGVTGYRNGESVWGLLKRVDEALYAAKLAGRDQVVVL 302


>gi|54293856|ref|YP_126271.1| hypothetical protein lpl0912 [Legionella pneumophila str. Lens]
 gi|53753688|emb|CAH15146.1| hypothetical protein lpl0912 [Legionella pneumophila str. Lens]
          Length = 377

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 92/183 (50%), Gaps = 19/183 (10%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEK------LSIVFFDIDYFKQIN 143
           KEL IS  ++  ++  D L+GL N   F +     +N        LS+V  D D FK IN
Sbjct: 194 KELLISELKVMTIT--DSLTGLYNRRYFDTLFPQEFNRARRNQYFLSLVSIDADNFKLIN 251

Query: 144 DNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DN GHP GDKV+  ++D L  +F  +   + RLGG+EFA        ++   +   ++  
Sbjct: 252 DNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKDTISICQSIKNP 311

Query: 203 IENSQINISSGPS-----IHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNR 254
            +   +N + G +      H+T+S GI    H E    I   I  AD+ALY AKK G+N+
Sbjct: 312 FKTENLNHNYGLNEQLLMSHVTLSIGIV-YIHFESSVSIEHAITAADKALYQAKKKGKNQ 370

Query: 255 VVC 257
           VV 
Sbjct: 371 VVV 373


>gi|17546264|ref|NP_519666.1| hypothetical protein RSc1545 [Ralstonia solanacearum GMI1000]
 gi|17428561|emb|CAD15247.1| probable signal transduction eal-ggdef domains transmembrane
           protein [Ralstonia solanacearum GMI1000]
          Length = 776

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 7/154 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           NRI QL+  D L+GL N + F     + L +   +L +++ D+D FK +ND  GH  GD 
Sbjct: 336 NRIRQLAHYDTLTGLANRTNFREQLDARLAAPEARLGLLYIDLDGFKLVNDTKGHRAGDA 395

Query: 154 VIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           ++  ++ +L  V   P M + RLGG+EFA          AA LA  L + +  +   + +
Sbjct: 396 LLERVAQRLRAVCDRPGMAIARLGGDEFAVLVPHDDADRAATLATALIEAL-GAPYALGA 454

Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALY 245
             ++ I  S GIA    H      ++ RAD ALY
Sbjct: 455 DQNVRIGASIGIALAPAHGRDTENLLARADIALY 488


>gi|327193248|gb|EGE60154.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium etli CNPAF512]
          Length = 843

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 13/180 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           + EL  S  +I Q++  D L+ L N S F       I+S  S  ++  ++  DID+FK +
Sbjct: 402 VTELNASRQKIHQMAFYDPLTALPNRSLFNDRLRQMITSAVSRGQRAGVMLIDIDHFKVV 461

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLR 200
           ND  GHPVGD+++   + +L         V RLGG+EFA     L   +    + ++ L 
Sbjct: 462 NDTMGHPVGDELLCQAAARLNASVRDYDTVARLGGDEFAILLPDLRPGDDLGRVASDILD 521

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
           K  EN  ++   G  + ++ S GIA         + ++  AD A+Y+AK+SGRN    +S
Sbjct: 522 KFRENFLLD---GKEVFVSCSVGIALYPDDSAEANDLVKYADSAMYLAKRSGRNSFRFYS 578


>gi|313607994|gb|EFR84100.1| ggdef domain-containing protein [Listeria monocytogenes FSL F2-208]
          Length = 375

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 7/127 (5%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           DID+FK+IND  GH  G+ V+A  S  L    F       R+GGEEFA        ++AA
Sbjct: 246 DIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTEQAA 305

Query: 194 ILANDLRKIIENSQI--NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250
           ++A+  R+ +E ++   N +SG    +T+S G+A    H     ++   ADQALY AK+S
Sbjct: 306 LIADFFREEVERAKFPYNPASG---KVTVSIGVASASSHFSTTESLFEAADQALYQAKQS 362

Query: 251 GRNRVVC 257
           GRN++  
Sbjct: 363 GRNQIAV 369


>gi|331682836|ref|ZP_08383455.1| putative GGDEF domain protein [Escherichia coli H299]
 gi|331080467|gb|EGI51646.1| putative GGDEF domain protein [Escherichia coli H299]
          Length = 410

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409


>gi|239995396|ref|ZP_04715920.1| sensory box protein [Alteromonas macleodii ATCC 27126]
          Length = 722

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 5/165 (3%)

Query: 99  RISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++ QL+  D L+GL N ++    IS L    +   +VF D+D FK INDN GH  GD  +
Sbjct: 294 KLRQLALHDELTGLSNRNSLRESISGLVQKEQHFILVFIDLDGFKAINDNAGHERGDIEL 353

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +   L  +FG    VGR GG+EF A     + +E A  +  L   IE   I + +   
Sbjct: 354 QRVGALLTAIFGPIGEVGRWGGDEFIAVLPNQNVEEIAERSERLISQIEEDAITVKTS-E 412

Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + ++ S GIAE   H + + +++  AD A+Y AK+ G+ +   + 
Sbjct: 413 LRLSASIGIAEFPEHSDNLESLVQCADAAMYRAKELGKGQAFIYE 457


>gi|217963936|ref|YP_002349614.1| ggdef domain protein [Listeria monocytogenes HCC23]
 gi|217333206|gb|ACK39000.1| ggdef domain protein [Listeria monocytogenes HCC23]
 gi|307571494|emb|CAR84673.1| GGDEF domain membrane protein [Listeria monocytogenes L99]
          Length = 375

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 7/127 (5%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           DID+FK+IND  GH  G+ V+A  S  L    F       R+GGEEFA        ++AA
Sbjct: 246 DIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTEQAA 305

Query: 194 ILANDLRKIIENSQI--NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250
           ++A+  R+ +E ++   N +SG    +T+S G+A    H     ++   ADQALY AK+S
Sbjct: 306 LIADFFREEVERAKFPYNPASG---KVTVSIGVASASSHFSTTESLFEAADQALYQAKQS 362

Query: 251 GRNRVVC 257
           GRN++  
Sbjct: 363 GRNQIAV 369


>gi|217972032|ref|YP_002356783.1| diguanylate cyclase with extracellular sensor [Shewanella baltica
           OS223]
 gi|217497167|gb|ACK45360.1| diguanylate cyclase with extracellular sensor [Shewanella baltica
           OS223]
          Length = 484

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYF 139
           ++ ++L  S   +  LS  D L+ L N   F + L   NE+        + +V  DIDYF
Sbjct: 310 TLRQQLEASNAELEFLSTHDPLTKLYNRHYF-NRLFINNEQHDKSARAGMCLVMIDIDYF 368

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND  GH VGD+++  +S  L         V R GGEEF      SS      L   +
Sbjct: 369 KEINDTLGHNVGDRILEQVSQVLQHCVRESDVVARWGGEEFVILCQQSSLPLVESLCVRI 428

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + I++ Q       ++ +T S G+A+    EP+     RAD+ALY AK  GRN++
Sbjct: 429 AERIKHYQFT----DNVQLTCSFGVAKLADNEPMMLCFERADRALYRAKAQGRNQM 480


>gi|218704860|ref|YP_002412379.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein
           [Escherichia coli UMN026]
 gi|256018406|ref|ZP_05432271.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein
           [Shigella sp. D9]
 gi|293404870|ref|ZP_06648862.1| hypothetical protein ECGG_00195 [Escherichia coli FVEC1412]
 gi|293433704|ref|ZP_06662132.1| ydaM protein [Escherichia coli B088]
 gi|298380514|ref|ZP_06990113.1| ydaM protein [Escherichia coli FVEC1302]
 gi|307309901|ref|ZP_07589551.1| diguanylate cyclase with PAS/PAC sensor [Escherichia coli W]
 gi|331667740|ref|ZP_08368604.1| putative GGDEF domain protein [Escherichia coli TA271]
 gi|218431957|emb|CAR12842.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein
           [Escherichia coli UMN026]
 gi|291324523|gb|EFE63945.1| ydaM protein [Escherichia coli B088]
 gi|291427078|gb|EFF00105.1| hypothetical protein ECGG_00195 [Escherichia coli FVEC1412]
 gi|298277956|gb|EFI19470.1| ydaM protein [Escherichia coli FVEC1302]
 gi|306909619|gb|EFN40113.1| diguanylate cyclase with PAS/PAC sensor [Escherichia coli W]
 gi|315060595|gb|ADT74922.1| predicted diguanylate cyclase, GGDEF domain signaling protein
           [Escherichia coli W]
 gi|323378843|gb|ADX51111.1| diguanylate cyclase with PAS/PAC sensor [Escherichia coli KO11]
 gi|324117464|gb|EGC11370.1| GGDEF domain-containing protein [Escherichia coli E1167]
 gi|331065325|gb|EGI37220.1| putative GGDEF domain protein [Escherichia coli TA271]
          Length = 410

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409


>gi|59713564|ref|YP_206339.1| GGDEF domain-containing protein [Vibrio fischeri ES114]
 gi|59481812|gb|AAW87451.1| GGDEF domain protein [Vibrio fischeri ES114]
          Length = 384

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 124/277 (44%), Gaps = 36/277 (12%)

Query: 7   DFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIA--TVIFIANIFLFYIGLTPFYGLEYI 64
           D   IW  +  N+   SP   ++   + +SI +   + IF+    L     T       +
Sbjct: 121 DMTEIWQTYLLNIPEISPLPVIV---VLYSIVMCGLSAIFV----LTRSNNTDLASYTCL 173

Query: 65  LVENLSLVIISIT-ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           L  +L+  + S+  IS  +  I+G +L    IS +   +L+ ID L+G+    A  S + 
Sbjct: 174 LYSSLTFSLFSVDYISSTMFSIAGLLLLLYIISASH--ELAFIDQLTGIPGRRALESEMK 231

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                 +I   D+D+FK+ ND +GH  GD V+  ++  +    G    V R GGEEF   
Sbjct: 232 HLGRTYTIAMLDVDHFKKFNDTYGHDTGDDVLKLVASIMAQTGGNAK-VYRYGGEEFTVL 290

Query: 184 ALGSSEQEAAILANDLRKIIENSQI---NISSGPS-----------------IHITISAG 223
             G + +++     +LR+ I +  +   + S+ P                  +++TIS G
Sbjct: 291 FKGKTAKQSLEYLEELREDIADYDLIIRDTSTRPKDNKEGQAKRGKANKTKVVNVTISIG 350

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +A+         +I  AD+ALY AK+ GRN   C S+
Sbjct: 351 VADSEDLRKPQLVIKAADEALYRAKEGGRN---CVSE 384


>gi|330955584|gb|EGH55844.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 202

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 2/129 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+ +  DID FK +ND +GH  GD V+  +++            GR+GGEEFAA   G +
Sbjct: 73  LAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCA 132

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVA 247
              A  +A  L++ I+      S G +  IT S G+      +P + T+  RAD A+Y A
Sbjct: 133 PDMAMQIAERLQREIQRQNFQ-SGGTTFSITASQGLTNLGADDPSLETLYGRADAAMYQA 191

Query: 248 KKSGRNRVV 256
           K+ G+N++V
Sbjct: 192 KRQGKNQIV 200


>gi|317491060|ref|ZP_07949496.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920607|gb|EFV41930.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 434

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 30/182 (16%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGH 148
           ISYN     S  D ++ L N S +   L       S  E ++++  DID+FK++ND +GH
Sbjct: 246 ISYNN----SIRDPMTRLYNRSYYYDVLIQRMKTVSEQEPITLLVADIDHFKRVNDVYGH 301

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+VI +++  L           R+GGEEF+    G    +A +LA+ +R  I +  +
Sbjct: 302 VTGDRVIQYVAKTLEYSIRKTDIAARIGGEEFSIMLNGIGRADAVLLADRIRMSISD-HM 360

Query: 209 NISSGPSI--HITISAGI---------AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           N      +   +TIS G+         AE+C        +  AD A+Y AK+ GR+RVV 
Sbjct: 361 NSPFAQDVPDKVTISIGVYTVTDNALGAEQC--------VAYADAAMYQAKQEGRDRVVL 412

Query: 258 FS 259
           +S
Sbjct: 413 YS 414


>gi|294664741|ref|ZP_06730070.1| GGDEF family protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292605495|gb|EFF48817.1| GGDEF family protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 955

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/159 (34%), Positives = 86/159 (54%), Gaps = 14/159 (8%)

Query: 107 DCLSGLLNHSAFISSLG------SYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN S  + ++       ++ E  L++V  D+D+FKQ+ND  GH VGD V+A + 
Sbjct: 791 DALTGLLNRSGILEAMAEELQGCAHGEHPLAVVLIDLDHFKQVNDEHGHLVGDAVLAKVG 850

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSI 216
            +L         VGR GGEE      G S+Q      + LR I E   +    + +   +
Sbjct: 851 ARLTACLRDSDKVGRYGGEELLLLLPGMSQQS----QHRLRAIHEALSLAPYEVGAARPL 906

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +T S G++     +  ++++ RAD+ALY AK+SGRNR+
Sbjct: 907 QVTCSVGVSWFRVGDTAASLLARADEALYRAKRSGRNRI 945


>gi|229028422|ref|ZP_04184544.1| Sensory box/GGDEF [Bacillus cereus AH1271]
 gi|228732871|gb|EEL83731.1| Sensory box/GGDEF [Bacillus cereus AH1271]
          Length = 569

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 135 RRLRVSESRYRELAYHDALTSLPNRLQLITTVNEMIADKKEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQAP- 253

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306


>gi|163816345|ref|ZP_02207711.1| hypothetical protein COPEUT_02533 [Coprococcus eutactus ATCC 27759]
 gi|158448342|gb|EDP25337.1| hypothetical protein COPEUT_02533 [Coprococcus eutactus ATCC 27759]
          Length = 381

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 83/181 (45%), Gaps = 12/181 (6%)

Query: 86  SGSILKELFISYNR-ISQLSR--IDCLSGLLNHSAFISSLGSYNEKLS-------IVFFD 135
           + +++  +  SYNR ++ +S   ID ++GL N  +F  SL    E+         +  FD
Sbjct: 200 TKALMSSIMGSYNRQVTLMSELMIDPMTGLYNRRSFEDSLEKEIERAEQTGAKSYVTIFD 259

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK++ND +GH  GD VI  L   +           R GGEEF          +   +
Sbjct: 260 IDHFKEVNDTYGHSNGDIVIKALCKMMKEKSKDMGLAFRYGGEEFVILFHDVELSKVMNI 319

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             D+R        +  +   I  T S G+AE    E       RAD ALY AK+SGRNR 
Sbjct: 320 VEDIRTEFRCYYFHFMNKDGI--TCSCGVAEYIKGESSKAWFNRADSALYKAKESGRNRT 377

Query: 256 V 256
           V
Sbjct: 378 V 378


>gi|58581174|ref|YP_200190.1| hypothetical protein XOO1551 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58425768|gb|AAW74805.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 840

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 2/134 (1%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           ++ F D+DYFK +ND FGH VGDK +   +D + +      ++GRLGG+EFA     +  
Sbjct: 442 ALCFVDMDYFKLVNDTFGHAVGDKFLCHFADVITMQLRPGDWLGRLGGDEFAILLANTDL 501

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAK 248
            +A  L   +  ++     +   G  +  + S G+ E R     +++++  AD A + AK
Sbjct: 502 PQARALLEGMHAVLGQPWSH-QGGRPLTPSCSFGVVEIRQSASDVNSLMTAADLACHAAK 560

Query: 249 KSGRNRVVCFSDIE 262
           + GRNR+ CF++ +
Sbjct: 561 EEGRNRIRCFNETD 574


>gi|21242683|ref|NP_642265.1| GGDEF family protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21108155|gb|AAM36801.1| GGDEF family protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 948

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/159 (34%), Positives = 86/159 (54%), Gaps = 14/159 (8%)

Query: 107 DCLSGLLNHSAFISSLG------SYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN S  + ++       ++ E  L++V  D+D+FKQ+ND  GH VGD V+A + 
Sbjct: 784 DALTGLLNRSGILEAMAEELQGCAHGEHPLAVVLIDLDHFKQVNDEHGHLVGDAVLAKVG 843

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSI 216
            +L         VGR GGEE      G S+Q      + LR I E   +    + +   +
Sbjct: 844 ARLTACLRDSDKVGRYGGEELLLLLPGMSQQS----QHRLRAIHEALSLAPYEVGAARPL 899

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +T S G++     +  ++++ RAD+ALY AK+SGRNR+
Sbjct: 900 QVTCSVGVSWFRVGDTAASLLARADEALYRAKRSGRNRI 938


>gi|330862839|emb|CBX72980.1| hypothetical protein YEW_FE22280 [Yersinia enterocolitica W22703]
          Length = 519

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 9/156 (5%)

Query: 104 SRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           ++ D ++GL N     ++L       +  S++  DID+FK+IND++GH VGD+VI  L+ 
Sbjct: 366 AQTDPMTGLYNRRGLATTLEPIVQLGQHFSVIALDIDHFKEINDSYGHDVGDEVIKQLAI 425

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHIT 219
           Q+         + R GGEEF      +    +  +A  LR  +E   + NI       IT
Sbjct: 426 QIRESSRDSDILCRSGGEEFLMLLPSTVPDVSTQVAKRLRHNVEMMVMANIRP-----IT 480

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           IS G+A    +      + RAD+ALY AK+ GRNRV
Sbjct: 481 ISLGVAFWNGEGTPEDALKRADEALYRAKQQGRNRV 516


>gi|153212575|ref|ZP_01948322.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|124116446|gb|EAY35266.1| GGDEF family protein [Vibrio cholerae 1587]
          Length = 312

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 8/167 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFI--SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           IS     + S+ID L+ L N   F   S   +    L ++ FDID+FKQIND +GHP GD
Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPETLLGLIIFDIDHFKQINDTYGHPAGD 205

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L           R GGEEF              LA ++R  +E+  + +  
Sbjct: 206 YVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANVIGLAENIRGYVESHTL-MWQ 264

Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  I +T+SAG    A   H      +++ ADQAL  AK+ GRNRV+
Sbjct: 265 GQQIALTLSAGCTMGAMMSHN--WDNLLHTADQALLSAKRLGRNRVI 309


>gi|78776419|ref|YP_392734.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78496959|gb|ABB43499.1| response regulator receiver modulated diguanylate cyclase
           [Sulfurimonas denitrificans DSM 1251]
          Length = 304

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 80/159 (50%), Gaps = 11/159 (6%)

Query: 107 DCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N   F   L   Y E       LSI+  DIDYFK  NDN+GH +GD+ +  ++
Sbjct: 141 DSLTGISNRRYFDEILEQKYREIIREPKNLSIIMIDIDYFKLYNDNYGHWMGDECLTKVA 200

Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIH 217
             L      P  V  R GGEEF     G  +  A  +A  L   I N  +  +  P S  
Sbjct: 201 IALKKAIKRPTDVLARYGGEEFVVLLKGVDKDGAKQVAQSLIDSISNLNLAHNFSPVSKI 260

Query: 218 ITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNR 254
           +TISAG+A +   E IS   +I +AD  LY AK SGRN+
Sbjct: 261 VTISAGVAIKEVDEDISKEDLIKKADAELYRAKNSGRNK 299


>gi|117920655|ref|YP_869847.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella sp. ANA-3]
 gi|117612987|gb|ABK48441.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella sp. ANA-3]
          Length = 543

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 8/158 (5%)

Query: 107 DCLSGLLNHSA-FISSLGSYN------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLNH+   +++   YN        + I   D+D+FKQ+ND +GH  GDKV+   +
Sbjct: 384 DSLTGLLNHTQILVAARRCYNLAKRINSSVCIAMLDLDHFKQVNDTYGHSGGDKVLLAFA 443

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L        F+GR GGEEF           A    N +R+   +  + +  G    +T
Sbjct: 444 HLLQQSLRPVDFMGRYGGEEFMLVLPDLPAPLAIAKLNAIRESFSHI-VFVEEGAEFKVT 502

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A           +  AD+ LY AK++GRNR++ 
Sbjct: 503 LSGGLAFSTECNEFQDCLLLADKNLYEAKRTGRNRLIT 540


>gi|320323918|gb|EFW80002.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320328055|gb|EFW84060.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 523

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 18/178 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYN-EKLSIVFFDIDYFKQIND 144
           EL I+ N +  ++  D L+ L N   F ++L       S N   ++I+  DID+FKQ ND
Sbjct: 328 ELNIARNELEIIAHTDSLTHLANRRCFDAALQQEWGRASRNTATIAIILLDIDWFKQYND 387

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDL 199
            +GH  GD  +     Q+  + G  +        R GGEEF      +    A  +A  +
Sbjct: 388 TYGHLQGDDCL----KQVAGLIGNSLDRAGDIAARYGGEEFVILLPETDLAGALKIAEKI 443

Query: 200 RKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           R  +E ++I  S+ P   +TIS+G+       K+  +  +  AD+ LY+AK  GRNRV
Sbjct: 444 RSSVETNRIEHSASPLGKLTISSGVVSINAAEKDGHTAALAEADRLLYLAKTRGRNRV 501


>gi|218700060|ref|YP_002407689.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein
           [Escherichia coli IAI39]
 gi|218370046|emb|CAR17822.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein
           [Escherichia coli IAI39]
          Length = 410

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409


>gi|212213496|ref|YP_002304432.1| sensory box/GGDEF family protein [Coxiella burnetii CbuG_Q212]
 gi|212011906|gb|ACJ19287.1| sensory box/GGDEF family protein [Coxiella burnetii CbuG_Q212]
          Length = 577

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 91/181 (50%), Gaps = 15/181 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           +  SI   L  +  RI+ L+  D L+ L N   FI  L        S + KLS++F D+D
Sbjct: 128 LQQSIFHTLLKNEARIAYLASRDQLTSLPNRREFIHRLNEEIGKPKSVDSKLSLLFLDLD 187

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM--FVGRLGGEEFAAAALGSSEQEAAIL 195
            FK IND  GH +GD V+  +SD+L  +  +P+  F+G LGG+EF        + + A L
Sbjct: 188 NFKDINDALGHHMGDCVLVHVSDRLRKLDLSPLNYFLGHLGGDEFVILLKDLQQDKDATL 247

Query: 196 ANDLRKIIENSQINISSGPS--IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252
                K I N+        +  +++  S GI  +   K    T++ +AD A+Y AKK GR
Sbjct: 248 C---AKKISNAFFESFKIKNFLLYVNFSIGITIDFYSKTDSETLLKKADMAMYQAKKKGR 304

Query: 253 N 253
           N
Sbjct: 305 N 305


>gi|254247989|ref|ZP_04941310.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
 gi|124872765|gb|EAY64481.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
          Length = 496

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 91/197 (46%), Gaps = 14/197 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128
           I +SLLLG    + L+    + + +  L+R D L+GL N  +F   L +   +       
Sbjct: 304 IALSLLLG----AQLRRRMRAESELVLLARTDGLTGLSNRRSFGEVLDNEWRRARRARSV 359

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187
            S++F D+D FK  ND +GH  GD  +A ++  +      P     R GGEEF      +
Sbjct: 360 FSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTAARYGGEEFVVLLPDT 419

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALY 245
            +  AA +A  +R  I+   +  +      +T S G+A     +      +I  AD+ALY
Sbjct: 420 PQTGAAQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPDQEGQPDAVIKAADEALY 479

Query: 246 VAKKSGRNRVVCFSDIE 262
            AK +GRN+V      E
Sbjct: 480 YAKATGRNKVAALQPAE 496


>gi|119945531|ref|YP_943211.1| diguanylate cyclase with PAS/PAC sensor [Psychromonas ingrahamii
           37]
 gi|119864135|gb|ABM03612.1| diguanylate cyclase with PAS/PAC sensor [Psychromonas ingrahamii
           37]
          Length = 654

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 5/165 (3%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           SY+ ++ L     L+  L  +   S     N  L+I+F D+D FK IND+ GH VGD ++
Sbjct: 492 SYDHLTHLPNRRLLNDRLKQAIAFSKRTQKN--LAILFIDLDGFKSINDSHGHQVGDWLL 549

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +S ++         VGRLGG+EF    L    + A  +AN +   +E   + I++   
Sbjct: 550 TEVSKRIQYCLRATDTVGRLGGDEF-VVVLPEIYENAKEVANKILNSLEEPFV-ITNNGV 607

Query: 216 IHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259
           +HI+ S G+A         T++   AD+A+Y AKK GRN+VV F 
Sbjct: 608 LHISSSIGVAIYPLDAKSQTMLMECADKAMYEAKKRGRNKVVFFD 652


>gi|39933963|ref|NP_946239.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009]
 gi|39647810|emb|CAE26330.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris
           CGA009]
          Length = 502

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 21/172 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ +L+  D L+GL N   F +++ +        N  ++++  D D+FK  ND+FGH  
Sbjct: 328 RRLEELATTDPLTGLTNRRKFDAAIDTEWRRAIRQNTPIALLMIDADHFKAYNDSFGHQA 387

Query: 151 GDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD+++  ++  +   V      V R GGEEFA    G +   A  +A  +R+ +E    +
Sbjct: 388 GDQMLVGIAVCIADTVHRAGDCVARFGGEEFAVLLPGLTAPAAEAIAETIRRKVEEWS-D 446

Query: 210 ISSGPSIHITISAGIAERCHKEPIST-----IIYRADQALYVAKKSGRNRVV 256
           I  G    +T+S G+A      PI+      ++  AD+ALY AK+ GRNR V
Sbjct: 447 IEGG----VTVSIGVASTT---PIAAHQWYDLVEAADRALYAAKELGRNRCV 491


>gi|330826915|ref|YP_004390218.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Alicycliphilus denitrificans K601]
 gi|329312287|gb|AEB86702.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alicycliphilus denitrificans K601]
          Length = 921

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 90/167 (53%), Gaps = 10/167 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           Y+ ++QL         L  S  + S  + +  L++VF D+DYFK++ND FGH +GD+++ 
Sbjct: 485 YDHLTQLPNRQMFQQDLQRS--MDSARASDLPLALVFLDLDYFKEVNDTFGHDMGDELLR 542

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILANDLRKIIENSQINISSGP 214
            ++ +L     +   V RLGG+EF      L   E   AI    L  + +  ++   SG 
Sbjct: 543 QVARRLQSCVRSSDQVARLGGDEFTLILRDLKRLEDAPAICRKVLHAVAQPYEL---SGS 599

Query: 215 SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++H+++SAG+    R   + + T++  AD A+Y AK+ GRN+   F+
Sbjct: 600 TVHVSVSAGVTFYPRDGDDGV-TLLKHADLAMYAAKEQGRNQFCEFA 645


>gi|325271650|ref|ZP_08138151.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas sp. TJI-51]
 gi|324103222|gb|EGC00568.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas sp. TJI-51]
          Length = 1098

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 92/174 (52%), Gaps = 16/174 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I  L+  D L+ L N +         I+ L  +N + +++F D+D+FK IND+ GHPVG
Sbjct: 656 QIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVG 715

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFA---AAALGSSEQ-EAAI--LANDLRKIIEN 205
           D V+  ++ +L         V RLGG+EF    +   GS E  EA +  LA+ LR+++  
Sbjct: 716 DAVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSRELVEAQVRELADTLRELL-- 773

Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           ++     G  + +T S G+A    H    + ++ RAD ALY AK SGRN    F
Sbjct: 774 AEPMSLDGQRLQVTPSIGVALIPDHGATPADLLKRADIALYRAKDSGRNTTQLF 827


>gi|315181530|gb|ADT88443.1| diguanylate cyclase [Vibrio furnissii NCTC 11218]
          Length = 468

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 113/249 (45%), Gaps = 15/249 (6%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL----VII 74
           L S  P + +++   F  I    ++F       ++ L     L  + V+ L L    ++ 
Sbjct: 221 LVSAYPSSQIVFMVFFLGIAQMWIVFTETATRSFVSLALLSTLTAVFVDVLGLSDRAMVY 280

Query: 75  SITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YN 126
             TI LL      G  +  + +   ++ +LS  D L+ +     FI ++         Y+
Sbjct: 281 QFTIYLLAANTYFGLWVPHILVDNQKLRRLSEQDILTDVQTRQFFIRNVHDEVIRARRYS 340

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           + +S+V FD+D FK INDN GH VGDKV+  +++ +         +GR GG+EF     G
Sbjct: 341 QPVSMVLFDVDNFKAINDNHGHIVGDKVLIAIANLVKQEIRPSDKIGRFGGDEFMLLLPG 400

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
                A  +A  LR+ I    + I     I +T S G+ E    +   +   +AD+ L  
Sbjct: 401 DDLSGAIRVAERLRQAI--GHLYIDDFGDI-VTCSFGVTEMKSNDNFVSAFEQADKLLLA 457

Query: 247 AKKSGRNRV 255
           AKK GR+RV
Sbjct: 458 AKKEGRHRV 466


>gi|300790800|ref|YP_003771091.1| GGDEF domain-containing protein [Amycolatopsis mediterranei U32]
 gi|299800314|gb|ADJ50689.1| GGDEF domain-containing protein [Amycolatopsis mediterranei U32]
          Length = 224

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 25/177 (14%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDN 145
            GS+   L  SYNR     R+        +  F          L++   D+D FK IND 
Sbjct: 53  DGSLRDPLTSSYNRRYLDERL--------YGPFTG-----RPPLALALIDLDRFKSINDT 99

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIE 204
           +GH VGD+V+  ++D L        F  R GGEEF     G   + A  + +D R ++  
Sbjct: 100 YGHLVGDRVLRRVADLLQENLPPDGFCARYGGEEFVLWLPGVDARRAVRVVDDARVRVAR 159

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTI-----IYRADQALYVAKKSGRNRVV 256
           +    +   P + +TISAG+A     EP +       + RAD  LY AK++GRN+VV
Sbjct: 160 HPWSELQ--PGLRVTISAGLAH----EPGTPASPERQLRRADVLLYAAKRAGRNKVV 210


>gi|319764707|ref|YP_004128644.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|317119268|gb|ADV01757.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
          Length = 921

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 90/167 (53%), Gaps = 10/167 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           Y+ ++QL         L  S  + S  + +  L++VF D+DYFK++ND FGH +GD+++ 
Sbjct: 485 YDHLTQLPNRQMFQQDLQRS--MDSARASDLPLALVFLDLDYFKEVNDTFGHDMGDELLR 542

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILANDLRKIIENSQINISSGP 214
            ++ +L     +   V RLGG+EF      L   E   AI    L  + +  ++   SG 
Sbjct: 543 QVARRLQSCVRSSDQVARLGGDEFTLILRDLKRLEDAPAICRKVLHAVAQPYEL---SGS 599

Query: 215 SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++H+++SAG+    R   + + T++  AD A+Y AK+ GRN+   F+
Sbjct: 600 TVHVSVSAGVTFYPRDGDDGV-TLLKHADLAMYAAKEQGRNQFCEFA 645


>gi|293605084|ref|ZP_06687476.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292816487|gb|EFF75576.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 375

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 87/182 (47%), Gaps = 20/182 (10%)

Query: 90  LKELFISYNRI----SQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDY 138
           L  + I ++R+     Q +  D L+GL++  A+      Y  +       L+++  D+D+
Sbjct: 184 LGTIMIIHDRMLADREQEANTDFLTGLMSRKAWWLQAERYCAQALRTRRPLTLLLLDVDH 243

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA---AAALGSSEQE-AAI 194
           FK+IND  GH  GD V+            T   VGR+GGEEF        G +  E AA 
Sbjct: 244 FKRINDTHGHVAGDAVLRHFGLLATATLRTGDHVGRVGGEEFGVLFPDMRGDAVMEVAAR 303

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           L + +R+           G +I  T SAG+AE    E +     RAD+ LY AK +GRNR
Sbjct: 304 LLDSVRR-----TPCAHGGSTISYTFSAGVAEWVPGENLQVFFERADRKLYAAKAAGRNR 358

Query: 255 VV 256
           +V
Sbjct: 359 IV 360


>gi|283832989|ref|ZP_06352730.1| putative GGDEF domain protein [Citrobacter youngae ATCC 29220]
 gi|291071602|gb|EFE09711.1| putative GGDEF domain protein [Citrobacter youngae ATCC 29220]
          Length = 410

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 77/165 (46%), Gaps = 11/165 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q +  D L+GLLN   F        ++  S  +  S++  D D FK IND FGH  GD
Sbjct: 249 LEQAALRDALTGLLNRRHFYQVTEPQQTNAMSLTQDYSLLLIDTDRFKSINDLFGHLKGD 308

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  L+  L         + R GGEEF      +S   A  LA  +R  +  +++ +  
Sbjct: 309 DVLCALARTLESCVRKDDLIFRWGGEEFVVLLPRTSLDAALNLAEVIRAAV--AKVTLPG 366

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            P    T+S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 367 LPR--FTVSIGVARHETNESIDELFKRVDDALYKAKNEGRNRVLA 409


>gi|218700465|ref|YP_002408094.1| putative diguanylate cyclase [Escherichia coli IAI39]
 gi|218370451|emb|CAR18258.1| putative diguanylate cyclase [Escherichia coli IAI39]
          Length = 485

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 13/160 (8%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 315 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 374

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216
           +         + R+GGEEF         + A  LA  +R+ +E     N +  I     +
Sbjct: 375 IGKSIRPDDLLARVGGEEFGVLLTEIDTECAKALAERIRENVERLTGDNPEYAIPQ--KV 432

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            I+I A + ++    P   I   AD ALY AK++GRN+VV
Sbjct: 433 TISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 471


>gi|218676491|ref|YP_002395310.1| hypothetical regulatory components of sensory transduction [Vibrio
           splendidus LGP32]
 gi|218324759|emb|CAV26424.1| hypothetical regulatory components of sensory transduction [Vibrio
           splendidus LGP32]
          Length = 323

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 11/165 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q +  D L+ L N     + L       G  N  ++++  D+D+FK  NDN+GH  GD
Sbjct: 147 LQQQANEDGLTKLYNRRYMDTKLEEIIAWHGRRNISMTVILLDVDFFKPYNDNYGHIQGD 206

Query: 153 KVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINI 210
           K +  L++ L  +F     FVGR GGEEF      +    A + AN +++ +   + ++ 
Sbjct: 207 KCLQGLANTLKELFVRAGEFVGRYGGEEFVIILSDTDSSGANLQANRVKEALHQMNYVHD 266

Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
            S  S  +T S G+     +  E I++I  + DQALY AK+SGRN
Sbjct: 267 YSAVSDRVTASQGVLSFIPEGGEAIASIYEKVDQALYQAKQSGRN 311


>gi|182417926|ref|ZP_02949236.1| putative diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor [Clostridium butyricum 5521]
 gi|237669231|ref|ZP_04529213.1| diguanylate cyclase domain protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182378235|gb|EDT75769.1| putative diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor [Clostridium butyricum 5521]
 gi|237655118|gb|EEP52676.1| diguanylate cyclase domain protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 472

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 78/152 (51%), Gaps = 6/152 (3%)

Query: 102 QLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           +++  D L+ L NH ++  ++      YN+ ++I+ FD++ FK IND +GH +GDK +  
Sbjct: 321 KMACADSLTKLNNHFSYKLTMKKLENKYNKNITIIVFDLNGFKLINDTYGHNIGDKALCV 380

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            S+ L+ VF    FVGR+GG+EF   +L  + +   I    L K+I  S+ N  S   + 
Sbjct: 381 FSEILLKVFKNKEFVGRIGGDEFIVISLEDNYENTEIKLKYLEKLI--SEYNKESEYRLG 438

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            +       +  K  +  I   AD  +Y  KK
Sbjct: 439 TSFGYCTRVKGDKSSLEKIQQEADICMYRNKK 470


>gi|158521388|ref|YP_001529258.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3]
 gi|158510214|gb|ABW67181.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3]
          Length = 368

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 29/247 (11%)

Query: 33  IFFSIFIATVIFIANIFLFYIGL-----------TPFYGLEYILVENLSLVIISITISLL 81
           + FSI       IA++F F + L           +P Y     +V   S++ + +T+S+ 
Sbjct: 125 VLFSILGDRRGMIASLFFFCLSLILMTLPETVLPSPPYSTH--IVARYSVIYVVLTLSVY 182

Query: 82  LGYISGSIL-KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVF 133
               S  +L + +    +R    S+ D L+GL N       + +  E+        +++ 
Sbjct: 183 YYETSHQMLIRYIQREKDRFESASKRDPLTGLANRRDISERMENERERQARSGRPFALIL 242

Query: 134 FDIDYFKQINDNFGHPVGDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
            DID FKQ+ND  GH  GD V   +A L    V     P    R GGEEF    + S  +
Sbjct: 243 GDIDNFKQLNDTHGHDCGDDVLKRVAGLMKNQVRGIDCP---SRWGGEEFLILLVESDRE 299

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKK 249
            A  +A  +R+ I+N+         + +T++ G++      + +   I RADQALY  K 
Sbjct: 300 GAYTVAGRIREKIQNTDFTFKK-EKMAVTMTFGLSVFNGGDDTVEKCIKRADQALYDGKH 358

Query: 250 SGRNRVV 256
            G+NRVV
Sbjct: 359 QGKNRVV 365


>gi|332163160|ref|YP_004299737.1| cell signaling regulator [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667390|gb|ADZ44034.1| cell signaling regulator [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 523

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 9/156 (5%)

Query: 104 SRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           ++ D ++GL N     ++L       +  S++  DID+FK+IND++GH VGD+VI  L+ 
Sbjct: 370 AQTDPMTGLYNRRGLATTLEPIVQLGQHFSVIALDIDHFKEINDSYGHDVGDEVIKQLAI 429

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHIT 219
           Q+         + R GGEEF      +    +  +A  LR  +E   + NI       IT
Sbjct: 430 QIRESSRDSDILCRSGGEEFLMLLPSTVPDVSTQVAKRLRHNVEMMVMANIRP-----IT 484

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           IS G+A    +      + RAD+ALY AK+ GRNRV
Sbjct: 485 ISLGVAFWNGEGTPEDALKRADEALYRAKQQGRNRV 520


>gi|295690973|ref|YP_003594666.1| diguanylate cyclase/phosphodiesterase [Caulobacter segnis ATCC
           21756]
 gi|295432876|gb|ADG12048.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Caulobacter segnis ATCC 21756]
          Length = 789

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 16/169 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-SYNEK-----------LSIVFFDIDYFKQINDNF 146
           RIS+L+  D L+ L N  +F+ +L  ++ E             +++  D+D+FK +ND+ 
Sbjct: 334 RISRLAHYDVLTQLPNRLSFLQALSRAWTEHGRGDREPRGAGCAVLCLDLDHFKGVNDSL 393

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN- 205
           GHP+GD ++   S +L    G    V RLGG+EFA     S   EA  L    R I+++ 
Sbjct: 394 GHPIGDDLLVQASARLRDCVGEMGLVARLGGDEFAVVVAPSPGAEA--LGELARDIVDSL 451

Query: 206 SQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRN 253
           S+     G  + I  S GIAE   H +    ++  AD ALY AK  GR 
Sbjct: 452 SRPYDVRGNHVLIGASVGIAEAPLHADDPDGLLKNADLALYQAKGDGRG 500


>gi|242372980|ref|ZP_04818554.1| ABC superfamily ATP binding cassette transporter, binding protein
           [Staphylococcus epidermidis M23864:W1]
 gi|242349306|gb|EES40907.1| ABC superfamily ATP binding cassette transporter, binding protein
           [Staphylococcus epidermidis M23864:W1]
          Length = 356

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 14/205 (6%)

Query: 63  YILVENLSLVIIS--ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           Y L+E L L+ IS  ITIS  + ++    +   F   NR     + D L+GL N   F  
Sbjct: 148 YDLIEILVLIPISLIITISSAITFVD---IWHFFSLVNRYENEDKYDYLTGLGNVKEFDR 204

Query: 121 SLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L          N+ L+++  DID FK +ND + H  GD V+  +S  L         + 
Sbjct: 205 HLNEVSSQAEEKNQSLALLLIDIDGFKDVNDTYSHQSGDAVLKQMSQLLKNYVPNQFKIF 264

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEF+      +  ++  LA ++R  +E S  ++ +   I +++S G+     ++  
Sbjct: 265 RNGGEEFSVVIRDYTLDQSVKLAENIRSGVEKSSFHLPNKEVIKLSVSIGVGYLTQEDRK 324

Query: 234 S--TIIYRADQALYVAKKSGRNRVV 256
           S   +   AD  ++VAK  GRN+V+
Sbjct: 325 SQRKVFKDADDMVHVAKNEGRNKVM 349


>gi|153836913|ref|ZP_01989580.1| ggdef family protein [Vibrio parahaemolyticus AQ3810]
 gi|260365684|ref|ZP_05778198.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
 gi|260878185|ref|ZP_05890540.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|260896095|ref|ZP_05904591.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|149749871|gb|EDM60616.1| ggdef family protein [Vibrio parahaemolyticus AQ3810]
 gi|308088132|gb|EFO37827.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|308093473|gb|EFO43168.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|308111783|gb|EFO49323.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
 gi|328470693|gb|EGF41604.1| GGDEF family protein [Vibrio parahaemolyticus 10329]
          Length = 388

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 24/174 (13%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           QL+  D L+ + +  A    L     K +I   D+D+FK+ ND +GH +GD V+  ++ +
Sbjct: 210 QLAFTDSLTQIPSRRALDLDLKHMGRKFTIAMLDVDHFKKFNDTYGHDIGDDVLKMVASR 269

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSIH- 217
           L+   G    V R GGEEF     G + ++      + RK I   ++   + +S P  H 
Sbjct: 270 LMKTRGGAK-VYRFGGEEFTMVFKGKNVEDCRQYIEEARKAIAEYEMILRDKASRPDDHK 328

Query: 218 -----------------ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
                            +T S G A+ R  +EP + +I  AD ALY AKK+GRN
Sbjct: 329 QGQQNRGTEDMQRESVFVTASFGAADSRNGREP-AEVIKLADAALYKAKKAGRN 381


>gi|116250781|ref|YP_766619.1| GGDEF/EAL transmembrane sensory box protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115255429|emb|CAK06505.1| putative GGDEF/EAL transmembrane sensory box protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 1046

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 60/179 (33%), Positives = 83/179 (46%), Gaps = 16/179 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQIND 144
           EL +  NRI   S  D L+ L N      +L S         +K SI+  D+D FK IND
Sbjct: 607 ELELVKNRIEHNSLHDPLTALANRRKLDIALESLTHDGRQQRQKFSILHIDLDRFKDIND 666

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN----DLR 200
             GH  GD ++   S  L         V R+GG+EF   AL   ++E A L+     ++R
Sbjct: 667 TLGHAAGDAMLVHASKVLAKNVRGSDIVARIGGDEFVILALDVGDKEMAQLSTRIIEEMR 726

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + I+    +   G SI I ++ GI     K     ++  AD ALY AK  GRNR   F+
Sbjct: 727 QPIDFQGFSCRCGVSIGIALANGIHVDARK-----VLINADIALYRAKSMGRNRFEFFN 780


>gi|24373122|ref|NP_717165.1| GGDEF domain-containing protein [Shewanella oneidensis MR-1]
 gi|24347318|gb|AAN54609.1|AE015601_3 GGDEF domain protein [Shewanella oneidensis MR-1]
          Length = 518

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 77/163 (47%), Gaps = 8/163 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +L+ +D L+ L N +A    +         +   L I   DID+FK IND+FGH  GDK
Sbjct: 354 QKLNLLDSLTQLPNRAALEERMELEYRNYQRHKSPLWIAVADIDHFKIINDSFGHSTGDK 413

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  ++  L        FV R GGEEF        + + A L N +R+ ++N      + 
Sbjct: 414 TLQVIAMALKNSLRDTEFVARYGGEEFVLILPDIDDSDIAQLLNRVREKVKNIPFKFKN- 472

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I +T+S G A     E I     RAD ALY AK   R+RVV
Sbjct: 473 QRITVTVSIGAARVMGNELIHETFERADAALYKAKHESRDRVV 515


>gi|73749065|ref|YP_308304.1| GGDEF domain-containing protein [Dehalococcoides sp. CBDB1]
 gi|73660781|emb|CAI83388.1| GGDEF domain [Dehalococcoides sp. CBDB1]
          Length = 792

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 89/181 (49%), Gaps = 18/181 (9%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y + +  +  D L+ L NH  F       I+    +    S++  D+D FK  ND +GH 
Sbjct: 410 YTQATIRANTDELTRLYNHRHFHERIEQEIARGSRFGNTFSLILLDLDLFKVYNDVYGHL 469

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+++  L   L     +     R GGEEFA    G+  ++A  +A  +RK IE+    
Sbjct: 470 AGDQLLRRLGKILENSIRSIDMAFRYGGEEFAIMLPGTKIEDAYHVAERIRKNIESK--- 526

Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            SS   + IT S G+A    +   KE    II +AD ALY +K++GRNR    +D+ NN+
Sbjct: 527 -SSFRDMPITASLGLANWPTDGVMKE---EIIAKADAALYRSKETGRNRTSLPADLNNNS 582

Query: 266 C 266
            
Sbjct: 583 T 583


>gi|307824542|ref|ZP_07654767.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
 gi|307734526|gb|EFO05378.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
          Length = 335

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 75/135 (55%), Gaps = 12/135 (8%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           I   DID+FK++ND+FGH  GD+V+   S  +   F    F+ R GGEEF      +S++
Sbjct: 194 IAILDIDHFKRVNDDFGHLYGDEVLLIFSQLMEKCFRYNDFLFRFGGEEFVVILNLASQE 253

Query: 191 EAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPIS---TIIYRADQALYV 246
            A  + N  R+ + N        P++  +T+S G+    H + IS   T +  AD+ALY 
Sbjct: 254 TAVNVFNRFREAVANYNF-----PTVGRVTVSIGL---THVDGISMPTTQLDHADKALYH 305

Query: 247 AKKSGRNRVVCFSDI 261
           AK +GRNR++ + D+
Sbjct: 306 AKDTGRNRIILYEDM 320


>gi|262273086|ref|ZP_06050903.1| GGDEF family protein [Grimontia hollisae CIP 101886]
 gi|262222842|gb|EEY74150.1| GGDEF family protein [Grimontia hollisae CIP 101886]
          Length = 341

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 82/157 (52%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+G+ N  A  + L +       +  S++  D+D+FK+ ND +GH +GD+V+   + +
Sbjct: 182 DALTGIYNRRALDAELEALVATPPPKGFSLLLCDLDHFKRFNDTYGHLMGDQVLKLTAKR 241

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HIT 219
           L       +   R GGEEFA          A  +A  +R  I+   + +  +G  + +I+
Sbjct: 242 LSDYCRDGIKAYRYGGEEFALLVPNRPLSGACRVAETIRATIDKLALKDKRTGKKLDNIS 301

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           IS G+A   H E I  +I RAD  LY AKK GRNRV+
Sbjct: 302 ISIGVAAFEHGESIRDLISRADTQLYDAKKLGRNRVM 338


>gi|118588681|ref|ZP_01546089.1| sensory box/GGDEF domain/EAL domain protein [Stappia aggregata IAM
           12614]
 gi|118438667|gb|EAV45300.1| sensory box/GGDEF domain/EAL domain protein [Stappia aggregata IAM
           12614]
          Length = 489

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 82/162 (50%), Gaps = 9/162 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+GL N + F  SL          N K +++  D+D FK +ND  GHPVGD
Sbjct: 316 VRRLAMTDHLTGLSNRAHFSQSLAESIAIADRENRKFALMMLDLDTFKPVNDRHGHPVGD 375

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++  ++  +         V R+GG+EF A  +    QE  +LA   R   E S+     
Sbjct: 376 ALLQVVASTIKRCTRDGDVVTRIGGDEF-AVIISDYAQEKDVLACAERIYREVSRPMDIK 434

Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
           G  I+I IS G++      +   ++I  ADQA+Y AKKSG N
Sbjct: 435 GNQINIGISIGVSFYPDDADDAKSLITHADQAMYEAKKSGVN 476


>gi|90022108|ref|YP_527935.1| response regulator receiver modulated diguanylate cyclase
           [Saccharophagus degradans 2-40]
 gi|89951708|gb|ABD81723.1| response regulator receiver modulated diguanylate cyclase
           [Saccharophagus degradans 2-40]
          Length = 301

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 90/175 (51%), Gaps = 10/175 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+G+ N  +F       ++    +   ++++  D D+FK IN
Sbjct: 126 RDLEKANKELERLATRDPLTGINNRRSFFKLAEAELTKTIRHGRDIALLMLDADHFKMIN 185

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD+ +  +++           + RLGGEEFA     ++ + A  +A  +R+  
Sbjct: 186 DTYGHAAGDEALLTITEICQNACRESDILARLGGEEFAICCPDTNLEGAYAVAERIRQQC 245

Query: 204 ENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           EN+ I  +S  S  IT+S GI        + I+ ++ RAD  LY AK+ GRNR +
Sbjct: 246 ENTVIEHNSA-SFGITLSIGITTFVPSQDKSITEMLQRADNLLYQAKEMGRNRSI 299


>gi|311696313|gb|ADP99186.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [marine bacterium HP15]
          Length = 759

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 17/184 (9%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           S LKE      ++  ++  D L+G+ N   F   L          + KL++V+ D+D FK
Sbjct: 579 SRLKE---QERKLRIMAHYDALTGMPNRVLFADRLQQAMALTRRQSGKLAVVYIDLDEFK 635

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA--AILAND 198
            +ND FGH  GD+++  ++ ++         + R+GG+EFAA  +   +  A  ++L   
Sbjct: 636 PVNDAFGHEAGDQLLVEIAHRMRSELREEDTLARIGGDEFAAIVMNVQDDPALESLLMRL 695

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVV 256
           L ++ E   +   +  S+ ++ S G       E +    ++ +ADQA+Y AK  GRNR V
Sbjct: 696 LARVAEPVWV---ADHSVEVSASIGYTLFPQAEDLDGDQLLRQADQAMYQAKHRGRNRYV 752

Query: 257 CFSD 260
            FSD
Sbjct: 753 RFSD 756


>gi|258621531|ref|ZP_05716564.1| GGDEF family protein [Vibrio mimicus VM573]
 gi|258586149|gb|EEW10865.1| GGDEF family protein [Vibrio mimicus VM573]
          Length = 408

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 84/172 (48%), Gaps = 20/172 (11%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           I ++R+  +   D L+G  N   F       L   +    +   DID+FKQIND++GH +
Sbjct: 239 IEWHRLRSIR--DELTGAFNRRYFKEQVQRQLNQSDTPYVVALVDIDHFKQINDSYGHDM 296

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK------IIE 204
           GD VI F+  +L  +  T   V R GGEEFA  A  +  +    + ND+         IE
Sbjct: 297 GDAVITFVVRKLESLNLTDCLVARYGGEEFAVFAREADAERVKEVLNDVCDAISQGFCIE 356

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           N Q+ +S      ++I A + +          + +AD A+Y AK+ GRNRV+
Sbjct: 357 NQQLKVS------VSIGAVLFDTPFD--YGEALRKADSAMYQAKEQGRNRVM 400


>gi|330972663|gb|EGH72729.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 664

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 18/187 (9%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEK----LSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++ S    NE+    L +
Sbjct: 206 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 262

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF      L   E
Sbjct: 263 LFMDLDGFKQINDTLGHEAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 322

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247
           Q A I    + ++    Q++   G  I +  S GIA    C    +  ++  AD A+Y A
Sbjct: 323 QAAKIAEKLIERVSGRRQVD---GVEITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 378

Query: 248 KKSGRNR 254
           K++GR +
Sbjct: 379 KRAGRQQ 385


>gi|297537744|ref|YP_003673513.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297257091|gb|ADI28936.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylotenera sp. 301]
          Length = 985

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 60/179 (33%), Positives = 91/179 (50%), Gaps = 21/179 (11%)

Query: 96  SYNRISQLSRIDCLSGL---------LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           S NR+ +L   D L+GL         L HS  I      N K++++F D+D FK +ND  
Sbjct: 553 SQNRLHELVNHDPLTGLPNRRLLNELLEHS--IKRAERDNHKIALLFIDLDRFKAVNDTL 610

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKIIEN 205
           GH VGDK++   S ++ +       V RLGG+EF     + S   +A+++A   +KII  
Sbjct: 611 GHQVGDKLLLEASRRISLSMRDSDVVARLGGDEFVVMMDMISKPSDASLVA---KKIIHA 667

Query: 206 SQINIS-SGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            QI  +  G  I+I+ S GI+   + C    +  +I  AD A+Y  K  G+N    +SD
Sbjct: 668 LQIEFNIDGHEIYISASVGISTFPKDC--ADVEGLIKAADIAMYQVKNKGKNNHCFYSD 724


>gi|260777847|ref|ZP_05886740.1| sensory box/GGDEF family protein [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605860|gb|EEX32145.1| sensory box/GGDEF family protein [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 303

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 98/195 (50%), Gaps = 20/195 (10%)

Query: 73  IISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGS 124
           IIS   + ++G I  S  + ++     ++++L+  D L+ L N        S   +   +
Sbjct: 112 IISSVTNEVIGLIGVSTDITDIVEMREKLAELANTDDLTKLYNRRKLWRQFSEEFAHAQT 171

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           ++  LS +  DID+FK IND FGH  GD+VI  L+D       +    GR+GGEEF    
Sbjct: 172 HDLSLSCIVIDIDHFKHINDTFGHDHGDEVIVQLADIARSHIRSTDSCGRIGGEEFLIVL 231

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGP----SIHITISAGIAERCHKEPISTIIY-R 239
             ++ ++A  +A  LR        +  S P    + + +IS G+ E   K+     +Y R
Sbjct: 232 HQTNAEQALQIAERLR-------CDFYSFPFFTDNNNFSISCGVTELTEKDKDFFDLYRR 284

Query: 240 ADQALYVAKKSGRNR 254
           AD+ALYV+K  GRNR
Sbjct: 285 ADKALYVSKNKGRNR 299


>gi|77361999|ref|YP_341573.1| GGDEF domain-containing protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876910|emb|CAI89127.1| putative protein with GGDEF domain [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 174

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 11/165 (6%)

Query: 99  RISQL---SRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +I QL   ++ D L+G+ N  +   ++  L       +I+  DID+FK++ND +GH  GD
Sbjct: 11  QIGQLRHDAQTDPLTGIHNRRSLKVWLDKLIHEQTLFTILEIDIDFFKRVNDTYGHDKGD 70

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  L+  +  +      V R+GGEEF       + + A  +A  LR  +E+S I+   
Sbjct: 71  ETLKALTVLIQSIARKDDIVARIGGEEFVLVIPNQNSEGAFKIAERLRLAVESSYIDTIG 130

Query: 213 GPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
               +ITIS GIA    H   I  +  +AD ALY AK+ GRNR V
Sbjct: 131 ----YITISIGIASYPEHGTNIDQVFKKADNALYYAKEHGRNRSV 171


>gi|297537336|ref|YP_003673105.1| diguanylate cyclase [Methylotenera sp. 301]
 gi|297256683|gb|ADI28528.1| diguanylate cyclase [Methylotenera sp. 301]
          Length = 337

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 82/168 (48%), Gaps = 22/168 (13%)

Query: 107 DCLSGLLNHSAFISSLGS-----------YNEKLSIVFF----DIDYFKQINDNFGHPVG 151
           D L+GLLN   F   +              ++K   V+F    DID+FK++ND FGH +G
Sbjct: 154 DTLTGLLNRKTFDFRINKILVQMQEAAKLQSDKADQVYFLAIFDIDHFKRVNDEFGHLIG 213

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+   S  +   F +   + R GGEEF      SS  +   + N  R+ +   Q N  
Sbjct: 214 DEVLLLFSQLMTQTFRSNDPIFRFGGEEFVGVFECSSHDDIPNILNRFREKV--GQFNF- 270

Query: 212 SGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             P +  +T+SAG  E       S +I  AD ALY AK +GRNR +CF
Sbjct: 271 --PQVGKVTVSAGYTEIFTYGLPSQLIDHADLALYFAKNNGRNR-ICF 315


>gi|262190925|ref|ZP_06049140.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
 gi|262033192|gb|EEY51715.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
          Length = 312

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 8/167 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFI--SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           IS     + S+ID L+ L N   F   S   +    L ++ FDID+FKQIND +GHP GD
Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPETLLGLIIFDIDHFKQINDTYGHPAGD 205

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L           R GGEEF              LA ++R  +E+  + +  
Sbjct: 206 YVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANVIGLAENIRGYVESHTL-MWQ 264

Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  I +T+SAG    A   H      +++ ADQAL  AK+ GRNRV+
Sbjct: 265 GQQIALTLSAGCTMGAMMSHN--WDNLLHTADQALLSAKRLGRNRVI 309


>gi|261211261|ref|ZP_05925550.1| GGDEF family protein [Vibrio sp. RC341]
 gi|260839762|gb|EEX66373.1| GGDEF family protein [Vibrio sp. RC341]
          Length = 312

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 82/160 (51%), Gaps = 12/160 (7%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           S+ID L+ L N   F +         +L ++ FDID+FKQIND +GHP GD V+  ++  
Sbjct: 155 SQIDPLTQLKNRRGFYTWCEPLVPETRLGMIIFDIDHFKQINDTYGHPAGDYVLRQIAGL 214

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L     +     R GGEEF              LA  +R+ +E++ + +  G  I +T+S
Sbjct: 215 LEQNLPSLSCCVRWGGEEFLVCFECDEMANVIGLAETIRRYVESNTL-MWQGQQIALTLS 273

Query: 222 AGIAERCHKEPIST-----IIYRADQALYVAKKSGRNRVV 256
           AG    C    +++     ++  ADQAL  AK+ GRNRV+
Sbjct: 274 AG----CTVGAMTSNNWDNLLQTADQALLSAKRLGRNRVI 309


>gi|153825555|ref|ZP_01978222.1| GGDEF family protein [Vibrio cholerae MZO-2]
 gi|149740840|gb|EDM54931.1| GGDEF family protein [Vibrio cholerae MZO-2]
          Length = 312

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 8/167 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFI--SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           IS     + S+ID L+ L N   F   S   +    L ++ FDID+FKQIND +GHP GD
Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPETLLGLIIFDIDHFKQINDTYGHPAGD 205

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L           R GGEEF              LA ++R  +E+  + +  
Sbjct: 206 YVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANVIGLAENIRGYVESHTL-MWQ 264

Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  I +T+SAG    A   H      +++ ADQAL  AK+ GRNRV+
Sbjct: 265 GQQIALTLSAGCTMGAMMSHN--WDNLLHTADQALLSAKRLGRNRVI 309


>gi|124267406|ref|YP_001021410.1| diguanylate cyclase [Methylibium petroleiphilum PM1]
 gi|124260181|gb|ABM95175.1| diguanylate cyclase [Methylibium petroleiphilum PM1]
          Length = 413

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 101/202 (50%), Gaps = 19/202 (9%)

Query: 70  SLVIISITISLLLGYI----------SGSILKELFISYNRISQLSRIDCLSGLLNHSAF- 118
           SLV+  + + LLL  +              +++L  +  ++  L+ ID L+ + N   F 
Sbjct: 194 SLVVTGVVLPLLLSMLFTVYLCLVLTHERTVRDLRETQRQLRVLADIDMLTQVPNRRHFE 253

Query: 119 ---ISSLGSYNEKLSI-VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
               + +G+     S+ + FDID+FK +NDN GH VGD  +  ++        T   +GR
Sbjct: 254 ELATAIVGNGAAPPSVLMLFDIDHFKHVNDNHGHAVGDAALRLVARCTRDTLRTRDVMGR 313

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
           +GG+EF     G+S  +A  +A+   +I  N  +   + P + +++S G+ +    E ++
Sbjct: 314 VGGDEFMLLLPGASVDDALHVAD---RITRNLDLASKNFP-LPLSLSFGLVQIHTGESLA 369

Query: 235 TIIYRADQALYVAKKSGRNRVV 256
              +RAD ALY AK+ GR R V
Sbjct: 370 AAQHRADLALYEAKRQGRRRAV 391


>gi|66043776|ref|YP_233617.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63254483|gb|AAY35579.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 719

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 18/187 (9%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEK----LSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++ S    NE+    L +
Sbjct: 261 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 317

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF      L   E
Sbjct: 318 LFMDLDGFKQINDTLGHEAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 377

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247
           Q A I    + ++    Q++   G  I +  S GIA    C    +  ++  AD A+Y A
Sbjct: 378 QAAKIAEKLIERVSGRRQVD---GVEITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 433

Query: 248 KKSGRNR 254
           K++GR +
Sbjct: 434 KRAGRQQ 440


>gi|309777328|ref|ZP_07672289.1| protein AdrA [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914869|gb|EFP60648.1| protein AdrA [Erysipelotrichaceae bacterium 3_1_53]
          Length = 253

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 96/180 (53%), Gaps = 16/180 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQIND 144
           K++     R+   S +D  +G+ +  AF        +K+      +++  DID+FK++ND
Sbjct: 73  KKIMAQNERLRYTSELDGFTGIYHKKAFQEHADELIKKVNQHNWGALLILDIDHFKEVND 132

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+ I  + D +  V  T    GR+GG+EF+    G + QEA +     +KI++
Sbjct: 133 TYGHLAGDEAILRIVDIMKKVLQTGDICGRIGGDEFSIFLCGLA-QEAQV-----QKIMQ 186

Query: 205 N--SQINISSGPSIHITISAGIAERCHKEPIS-TIIYR-ADQALYVAKKSGRNRVVCFSD 260
           +   Q++    P + +T++  I     ++P S T IY+ +DQALY AK+ GRN+   + +
Sbjct: 187 SILKQVHEIRLPGLDMTLTMSIGCCLIQKPCSFTHIYQHSDQALYKAKEKGRNQAYLYKE 246


>gi|254505185|ref|ZP_05117336.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
 gi|222441256|gb|EEE47935.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
          Length = 298

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 18/164 (10%)

Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           ++ L++ D L+GLLN        +  +S     +  LS++  DID+FK IND +GH  GD
Sbjct: 134 LANLAKRDALTGLLNRRELSEQFAMLLSQANRADRALSVLLIDIDHFKTINDEYGHQRGD 193

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+      L     T     R GGEEF      +   +AA  A+ + + +   ++    
Sbjct: 194 TVLREFGGLLQKSCRTGDVAARYGGEEFVVLLPDTGITDAAKRADRIHEKLSGIEVG--- 250

Query: 213 GPSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGR 252
              +  ++S GI+E+  K P++T    +I +AD+ALY+AK +GR
Sbjct: 251 --GLRFSVSIGISEK--KAPVATDAENMIKKADEALYLAKNAGR 290


>gi|270263851|ref|ZP_06192119.1| diguanylate cyclase [Serratia odorifera 4Rx13]
 gi|270042044|gb|EFA15140.1| diguanylate cyclase [Serratia odorifera 4Rx13]
          Length = 358

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 95/183 (51%), Gaps = 7/183 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQ 141
           + +++  L+   +R S LS ID L+GL N     + +    E  S    ++  DID+FK 
Sbjct: 172 TQTLVANLYNERDRFSNLSMIDPLTGLYNRRGLENKINMLPESQSGRHFVLLLDIDHFKA 231

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            NDN+GH +GD+ +  ++  +     +   V R GGEEF        E  AA LA  +R+
Sbjct: 232 YNDNYGHTMGDQALVQVAIAIRDSVRSRDIVVRYGGEEFLVLLTNVREDYAAQLAERVRR 291

Query: 202 IIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++  +I    +     ++T+SAGIA    K  +++ I  AD ALY+AK +GRN +    
Sbjct: 292 RVQELKIPHRFNQLEMTNVTLSAGIA-MLDKLDVASAIRAADAALYLAKNNGRNNIQLAE 350

Query: 260 DIE 262
           +++
Sbjct: 351 NVQ 353


>gi|124516482|gb|EAY57990.1| Diguanylate cyclase [Leptospirillum rubarum]
          Length = 368

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 83/161 (51%), Gaps = 11/161 (6%)

Query: 106 IDCLSGLLNHSAFISSLGS-YNEKLSIVFFDIDYFKQINDNFGHPVGD---KVIAFLSDQ 161
           +D L+G LN   F   +GS     + ++ FD+D+FKQ+ND  GH  GD   K IA L + 
Sbjct: 203 LDPLTGTLNRRGFQKRIGSSVGMDIVLLIFDLDHFKQLNDRQGHHQGDLVLKRIAGLVNG 262

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS--GPSIH-I 218
           L+   G+     R GG+EF       + +E   +A ++R  IE   +  SS   PS   +
Sbjct: 263 LLD--GSNAVFSRWGGDEFLVMFPRKNLEEIVAIAEEIRTQIEKEALGASSETEPSGQGM 320

Query: 219 TISAGI-AERCHKEPISTIIYR-ADQALYVAKKSGRNRVVC 257
           TIS G+ A R   E      Y  ADQALY+AKK GRNR   
Sbjct: 321 TISVGLSAGRLDSEEQFDRFYNLADQALYLAKKEGRNRTRA 361


>gi|330900807|gb|EGH32226.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 664

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 97/187 (51%), Gaps = 18/187 (9%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEK----LSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++ S    NE+    L +
Sbjct: 206 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 262

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189
           +F D+D FKQIND+ GH  GD+V+ ++++Q          + R+GG+EF      L   E
Sbjct: 263 LFMDLDGFKQINDSLGHEAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 322

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247
           Q A I    + ++    Q++   G  I +  S GIA    C    +  ++  AD A+Y A
Sbjct: 323 QAAKIAEKLIERVSGRRQVD---GVEITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 378

Query: 248 KKSGRNR 254
           K++GR +
Sbjct: 379 KRAGRQQ 385


>gi|325924044|ref|ZP_08185623.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           gardneri ATCC 19865]
 gi|325545479|gb|EGD16754.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           gardneri ATCC 19865]
          Length = 348

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 16/179 (8%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF----------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           F +Y  +   ++ D L+GL N   F           ++  S  E + +   DID+FK++N
Sbjct: 156 FQNYRSLLDDAQRDALTGLRNRKTFDDVILRLFAGAAADASAGESVWLGIVDIDHFKRVN 215

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+FGH  GD+V+  ++  +   F     + R GGEEF     G     A  L    R  +
Sbjct: 216 DSFGHLYGDEVLLLVAQLMQRAFRQDDLLFRFGGEEFVIVLRGVDRDTAVSLFERFRLAV 275

Query: 204 ENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                     P +  +T+S GI E  H   IS ++  AD+ALY AK+ GRNR   ++++
Sbjct: 276 AEYAF-----PQVGKVTLSTGIVELTHGRLISQMMDEADKALYWAKQHGRNRAEVYAEL 329


>gi|324324668|gb|ADY19928.1| sensory box, GGDEF family protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 568

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 88/174 (50%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++        +  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKREFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQAP- 251

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             I  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 252 -FILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304


>gi|309779360|ref|ZP_07674122.1| hypothetical protein HMPREF1004_00711 [Ralstonia sp. 5_7_47FAA]
 gi|308921918|gb|EFP67553.1| hypothetical protein HMPREF1004_00711 [Ralstonia sp. 5_7_47FAA]
          Length = 390

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 8/156 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G L+   F       +  +  +   L+++  D+D+FK+IND  GH  GD V+    
Sbjct: 224 DFLTGALSRQGFEALARRHVGRVLRHARPLALLILDLDHFKRINDTLGHAAGDAVLRAFV 283

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
                       +GR+GGEEFA     +    A  LA+ LRK    + + ++   S   +
Sbjct: 284 QMAQAQLRPTDVLGRIGGEEFALLLPDTDSGNAMHLADRLRK-AAAAHVVMAGAQSCRYS 342

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S G+A     E    +  RAD+ALY AK  GR+R+
Sbjct: 343 LSGGVAVWQPGESFDRLSARADRALYDAKHQGRDRI 378


>gi|153803424|ref|ZP_01958010.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|124121037|gb|EAY39780.1| GGDEF family protein [Vibrio cholerae MZO-3]
          Length = 312

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 8/167 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFI--SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           IS     + S+ID L+ L N   F   S   +    L ++ FDID+FKQIND +GHP GD
Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPETLLGLIIFDIDHFKQINDTYGHPAGD 205

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L           R GGEEF              LA ++R  +E+  + +  
Sbjct: 206 YVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANVIGLAENIRGYVESHTL-MWQ 264

Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  I +T+SAG    A   H      +++ ADQAL  AK+ GRNRV+
Sbjct: 265 GQQIALTLSAGCTMGAMMSHN--WDNLLHTADQALLSAKRLGRNRVI 309


>gi|325288309|ref|YP_004264490.1| diguanylate cyclase [Syntrophobotulus glycolicus DSM 8271]
 gi|324963710|gb|ADY54489.1| diguanylate cyclase [Syntrophobotulus glycolicus DSM 8271]
          Length = 369

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 25/211 (11%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRI--------------SQLSRIDCLSGLLNHS 116
           +VI+ I +  LLGYI G +  E+     R+              +++   D L+ L NH 
Sbjct: 148 VVIVQILLFFLLGYIMGVVNHEINRLVGRLCYMNEDLEHKNSLLNEMVSKDYLTSLYNHK 207

Query: 117 AF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            F       I+        LS+   DID FK+IND +GH  GD+V+  +S  +       
Sbjct: 208 TFYIYYKEIITRSYESQNSLSLALLDIDNFKKINDTYGHLAGDQVLQKISALIQANVRKN 267

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               R GGEEFA     +  +    +   +R +I   +  +     I +TIS G+A    
Sbjct: 268 DVAARYGGEEFAIIFPDTLPEIGNAVCERIRNLIAGHEF-VFDNQIIQVTISGGVAGGIC 326

Query: 230 KEPI---STIIYRADQALYVAKKSGRNRVVC 257
            EP    + +    DQ LY AK  G+NR++C
Sbjct: 327 MEPRYKNNELFTCVDQLLYQAKGQGKNRILC 357


>gi|255654991|ref|ZP_05400400.1| putative signaling protein [Clostridium difficile QCD-23m63]
          Length = 514

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 16/176 (9%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
            Y  +   +  D L+ + N   F        + + G   + L I+  D+D FK+INDNFG
Sbjct: 339 KYEELKTRAESDSLTNIYNKGTFEKLVEETIVMNTGDKKDALFII--DLDDFKEINDNFG 396

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206
           HP GD V+   +D++   FG+   VGR+GG+EF        +E      A +L +++ ++
Sbjct: 397 HPFGDFVLKTFADKIQASFGSRDLVGRIGGDEFVVYMQDYVTEVNLHKKAKELNRVLSDN 456

Query: 207 QINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260
             ++S   S   ++S GIA R  ++  S   +   AD+ALY  K SG+N    F +
Sbjct: 457 YTDLSF--SFDASVSIGIA-RYPQDGTSFFELFKNADRALYSIKASGKNSYCLFEE 509


>gi|152993068|ref|YP_001358789.1| hypothetical protein SUN_1481 [Sulfurovum sp. NBC37-1]
 gi|151424929|dbj|BAF72432.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 813

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 94/178 (52%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           +EL    + +   +  D L+GL N + F   L         +  KL++ F D+D FKQIN
Sbjct: 374 QELLKQKDILHHQAHHDALTGLPNRTLFSDRLEHGLKLAERHLGKLALFFIDLDNFKQIN 433

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKI 202
           D+ GH +GDKV+  +S +L         + RLGG+EF        + Q+ ++LA  ++K+
Sbjct: 434 DSLGHQIGDKVLVVVSKRLKAKIRQEDTLARLGGDEFTIIMENFKDVQQVSVLAQKIQKV 493

Query: 203 IENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + N  ++I  G +++I+ S GI+      +  + ++  AD A+Y AK+ GRN    +S
Sbjct: 494 L-NQPMHI-EGHTLYISCSIGISFYPQDTQNANDLVKYADAAMYKAKEEGRNNFQFYS 549


>gi|120613358|ref|YP_973036.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
 gi|120591822|gb|ABM35262.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
          Length = 572

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 11/167 (6%)

Query: 100 ISQL---SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           I+QL   S  D L+GL N  AF       I+        ++++  D+D FK  ND  GH 
Sbjct: 402 IAQLREQSLTDFLTGLPNRRAFFAAARERIAQARQQRFDVALMLLDVDLFKSFNDRAGHA 461

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+ +  ++  +         V R GGEEF       + +E A  A  LR  IE + + 
Sbjct: 462 AGDEALRAVARAVRHTLRPGDLVARYGGEEFVVLLGPCAGREGAACAERLRHAIETAPVV 521

Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + SG    +T S G+A  + H   +  ++  AD ALY AK  GRNRV
Sbjct: 522 LPSGERFRLTASVGVAVSQRHGMVLDHLLSEADTALYRAKDRGRNRV 568


>gi|78486259|ref|YP_392184.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78364545|gb|ABB42510.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Thiomicrospira crunogena XCL-2]
          Length = 893

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 86/173 (49%), Gaps = 20/173 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R   LS  D L+GL N   F       I+        L+I   DID+FK+IND +GH  G
Sbjct: 723 RNEHLSITDDLTGLYNRRYFNQVIEREINRAKREQRSLAIAMMDIDFFKKINDTYGHQEG 782

Query: 152 DKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           D+V+     Q+  VF +       FV R+GGEEF   +L  SE E       L   +++ 
Sbjct: 783 DQVL----KQVATVFESSFHRATDFVFRMGGEEFLVISLFKSEAEFQTYLEQLCLKVKSL 838

Query: 207 QINISSGPSIHITISAGIAERCHKEPI--STIIYR-ADQALYVAKKSGRNRVV 256
            I  ++     +TIS G A  C  + +  S  +Y+  DQ LY AK++GRN+VV
Sbjct: 839 GIENAASSEGVLTISVG-AIYCESDALTNSEKLYKVVDQRLYQAKQTGRNKVV 890


>gi|77748542|ref|NP_640967.2| GGDEF family protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 317

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 83/180 (46%), Gaps = 19/180 (10%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF-----------ISSLGSYNEKLSIVFFDIDYFKQI 142
           F +Y  +   ++ + L+GL N   F             S       L IV  DID+FK++
Sbjct: 126 FQNYRSLLDDAQRNALTGLRNRKTFDDVILRLFAGGADSAAEQGVWLGIV--DIDHFKRV 183

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH  GD+V+  ++  +   F     + R GGEEF     G     A  L    R  
Sbjct: 184 NDTFGHLYGDEVLLLVAQLMQRAFRQDDLLFRFGGEEFVIVLRGVDRDTAVSLFERFRLA 243

Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +          P +  +T+S GI E  H   IS ++  AD+ALY AK++GRNR   ++++
Sbjct: 244 VAEHLF-----PQVGQVTLSTGIVELTHGRLISEMLDEADKALYWAKQNGRNRAAVYAEL 298


>gi|88860801|ref|ZP_01135438.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Pseudoalteromonas tunicata D2]
 gi|88817396|gb|EAR27214.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Pseudoalteromonas tunicata D2]
          Length = 357

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 116/243 (47%), Gaps = 22/243 (9%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN--------LSLVIISITISLLLGY 84
           ++F +F      +AN+ +F   L   Y  ++IL E         ++  +++I +S +  Y
Sbjct: 115 VYFILFDYRKGLVANLLIFSAILFLLYQPDWILAEYQPAEKSRFIASYLVTIFLSFVAEY 174

Query: 85  ISGSILKELF-ISYNRISQLSRIDCLSGLLNHSAFISS---LGSYNEK-----LSIVFFD 135
                 +EL  I+Y R  Q +  D L+ L N   F+ S   +G+  E      + +V  D
Sbjct: 175 FRFHSHQELSSINYQRQKQ-ANTDPLTQLPNRR-FLDSVFFIGADREPKHYFPMVVVMAD 232

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK++ND +GH  GD V+  ++  L         V R+GGEEF      +   +   +
Sbjct: 233 IDFFKRVNDTYGHDTGDHVLKHVASLLKSSLRGFDVVARIGGEEFLILLPQTMLVDGISV 292

Query: 196 ANDLRKIIENSQINISSGPS---IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           A  +R   +N+  N         I +T+S G+AE    E ++  I  AD  LY+AK+ GR
Sbjct: 293 AEKIRIECQNTPFNQFDNLQQVYIDLTVSFGVAEASSAEQLNNAIMAADSKLYLAKEQGR 352

Query: 253 NRV 255
           N+V
Sbjct: 353 NQV 355


>gi|126176222|ref|YP_001052371.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|125999427|gb|ABN63502.1| diguanylate cyclase [Shewanella baltica OS155]
          Length = 610

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 10/177 (5%)

Query: 89  ILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQIND 144
           +L++  +S N ++ +++  D L+GL N   F   L +    +    +   D+DYFK  ND
Sbjct: 424 VLQQALVSANTQLKEMAETDELTGLANRRPFTERLETVLQADTPAGLFMLDVDYFKSYND 483

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
            + H  GD V+  ++D L      P    + R+GGEEFA      +  +   +A  L  +
Sbjct: 484 TYVHLEGDVVLKRVADALAQCDILPHNALLARIGGEEFALVVEHVTPAQLTAIATQLCYL 543

Query: 203 IENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E   I   + P   +TIS G      ++     ++ ++ RAD  LY AK  GRNRV
Sbjct: 544 VEQLNIPHQASPLAVLTISIGCVFLPLDKVSGLKMADVLRRADVCLYRAKDKGRNRV 600


>gi|311696963|gb|ADP99836.1| diguanylate cyclase with PAS/PAC sensor [marine bacterium HP15]
          Length = 753

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 84/170 (49%), Gaps = 10/170 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFI------SSLGSYNE-KLSIVFFDIDYFKQINDNFGHPV 150
             + + S  D L+GL N   F       S++   N+  LS++  DID+FK+ ND  GH  
Sbjct: 584 EELQKFSYEDGLTGLKNRRYFDQLFEHESAVAQRNDLPLSLLIIDIDHFKKFNDTHGHEA 643

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD  +  ++  L   F     V R GGEEF     G++ + A   A+ L   + +  I  
Sbjct: 644 GDNALKIVAGILQKQFRESDLVCRYGGEEFVVVMPGATSEAAMDKASQLSSAVRDVAIIH 703

Query: 211 SSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                  +T+S G+A      ++P+  I+  AD+ALY AK++GRNRV  F
Sbjct: 704 REKDLGALTVSVGVASWPESGEKPLQ-ILTLADRALYRAKEAGRNRVEVF 752


>gi|308126495|ref|ZP_05910508.2| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|308109956|gb|EFO47496.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 409

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 24/174 (13%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           QL+  D L+ + +  A    L     K +I   D+D+FK+ ND +GH +GD V+  ++ +
Sbjct: 231 QLAFTDSLTQIPSRRALDLDLKHMGRKFTIAMLDVDHFKKFNDTYGHDIGDDVLKMVASR 290

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSIH- 217
           L+   G    V R GGEEF     G + ++      + RK I   ++   + +S P  H 
Sbjct: 291 LMKTRGGAK-VYRFGGEEFTMVFKGKNVEDCRQYIEEARKAIAEYEMILRDKASRPDDHK 349

Query: 218 -----------------ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
                            +T S G A+ R  +EP + +I  AD ALY AKK+GRN
Sbjct: 350 QGQQNRGTEDMQRESVFVTASFGAADSRNGREP-AEVIKLADAALYKAKKAGRN 402


>gi|299529288|ref|ZP_07042728.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298722732|gb|EFI63649.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 522

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 12/180 (6%)

Query: 90  LKELFISYN-RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           ++E  +  N  + +L   D L+GL N   F       +         LS++  D+D+FK 
Sbjct: 343 VREKLLDANLELERLVTQDSLTGLANRRRFDEVLQLEVRRAARDGTVLSLLLIDLDHFKG 402

Query: 142 INDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND +GH  GD+ +  +S QL +    +     R GGEE A     ++ + A  +A +L 
Sbjct: 403 FNDRYGHVAGDECLKAVSRQLELSAKRSGDLAARYGGEELAIILPNTALEGAMRVAEELL 462

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVC 257
           K I    I   S    H+T+S G A    +  +++   ++  ADQALY AK +GRNR  C
Sbjct: 463 KCIRGLDIAHESSQFGHVTVSIGAASMQGRHGLASPLDLVEAADQALYRAKAAGRNRAEC 522


>gi|253689352|ref|YP_003018542.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251755930|gb|ACT14006.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 310

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 7/158 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF-DIDYFKQINDNFGHPVGDKVIAF 157
           RI   S  D L+ L N   FI+ L     K   +F  DID FK IND +GH  GD+V++ 
Sbjct: 145 RIQSFS--DELTQLPNRRFFINELKKLEAKTPYLFIIDIDNFKVINDKYGHTKGDEVLSK 202

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
               L     + +   R+GGEEFA      ++  A  LA   R++++N+   I      H
Sbjct: 203 FGHILSRFDNSEVVATRIGGEEFAIILYAGTQDRAEKLA---REVLKNANKIIIKNMH-H 258

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +++S G  ++  +EP    + R D ALY AK +G+ +V
Sbjct: 259 LSVSIGAGKKQPQEPTEHFMKRVDIALYQAKNTGKGKV 296


>gi|241765248|ref|ZP_04763230.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
 gi|241365080|gb|EER59965.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
          Length = 254

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 77/163 (47%), Gaps = 9/163 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +LS  D L+GL N   F       I  +    E   ++  DID+FKQIND  GH  GD
Sbjct: 49  LCELSLKDPLTGLANRRHFRAVLEREIDRVTRSGEAALLLMLDIDHFKQINDTHGHLAGD 108

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L         + R GGEEFA            ++A  +R+ + N+ + IS 
Sbjct: 109 VVLQSVARTLNACIRPMDTLARYGGEEFAVVLPACQAGFGKVVAERIRRAVANTPVRISP 168

Query: 213 GPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRN 253
              + +TIS G A        +T+++  RAD  LY AK  GRN
Sbjct: 169 SVEVQVTISIGGAFAMQWIRSTTLLWTDRADHQLYTAKSLGRN 211


>gi|229591725|ref|YP_002873844.1| putative GGDEF/GAF domain sensory box protein [Pseudomonas
           fluorescens SBW25]
 gi|229363591|emb|CAY50893.1| putative GGDEF/GAF domain sensory box protein [Pseudomonas
           fluorescens SBW25]
          Length = 315

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 1/128 (0%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS++  DID+FK+IND  GH  GD V+  ++  +         V R GGEEF      + 
Sbjct: 186 LSLLMIDIDHFKRINDTHGHAAGDNVLRAVAAAIKGQLRNVDMVFRFGGEEFLILLSNTG 245

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
              AA++   LR+  + +Q   +    I +T+S G +     E   +++ RAD ALYVAK
Sbjct: 246 RDAAAMVGERLRQAAQ-AQDYWADDTRIELTVSLGCSTLLAAESAESLLRRADTALYVAK 304

Query: 249 KSGRNRVV 256
           + GRNR+ 
Sbjct: 305 REGRNRLA 312


>gi|209886005|ref|YP_002289862.1| diguanylate cyclase/phosphodiesterase [Oligotropha carboxidovorans
           OM5]
 gi|209874201|gb|ACI93997.1| diguanylate cyclase/phosphodiesterase [Oligotropha carboxidovorans
           OM5]
          Length = 907

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 15/163 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           RI+ ++R D L+ L N + F   + ++   +E L+++  D+D FKQ+ND  GH VGD+++
Sbjct: 477 RIAHMARYDALTDLPNRTMFRDHLETMLRQSEPLAVLSIDVDEFKQVNDTLGHFVGDELL 536

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS---- 211
             ++ ++         V RLGG+EFA    G  E+       DL  +IE     I     
Sbjct: 537 VAIAGRVSDCMEPGDLVARLGGDEFAIVRHGVRERA------DLIPLIERVHAAIRLPYS 590

Query: 212 -SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252
             G  +++  S G+A   C    +  ++  AD ALY AK SGR
Sbjct: 591 CVGHRLNVDASIGVAVSPCDGSELEGLLRNADLALYAAKGSGR 633


>gi|117620579|ref|YP_854982.1| GGDEF family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117561986|gb|ABK38934.1| GGDEF family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 301

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 88/179 (49%), Gaps = 11/179 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDY 138
           + +++ +I ++  +   R+   S  D L+GL N   F        +     ++V  DID+
Sbjct: 120 VAWVTRNITRQYELQ-QRLKLQSETDQLTGLYNRRYFFEHCRQRRAGEAPCALVMLDIDH 178

Query: 139 FKQINDNFGHPVGDKVIA-FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           FKQIND FGH  GD+ +  F +     +    MFV R GGEEF     G SE +   LA 
Sbjct: 179 FKQINDRFGHQQGDRALQRFCACVAAQLRADDMFV-RSGGEEFLILLPGMSEPDLLALAE 237

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +R  +      + + P+   T+S G       E I+  + RAD+ LY AK++GRNRV 
Sbjct: 238 RIRAAV----AALPADPAA-FTVSLGTTLVRPGEEINQALARADEWLYRAKRAGRNRVA 291


>gi|269967761|ref|ZP_06181809.1| GGDEF family protein [Vibrio alginolyticus 40B]
 gi|269827667|gb|EEZ81953.1| GGDEF family protein [Vibrio alginolyticus 40B]
          Length = 412

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 22/173 (12%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           QL+  D L+ + +  A    L    +K +I   D+D+FK+ ND +GH  GD V+  ++ +
Sbjct: 236 QLAFTDSLTLIPSRRALDLDLKHMGKKFTIAMLDVDHFKKFNDTYGHDTGDDVLKMVASR 295

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI------------- 208
           L    G    V R GGEEF     G    E      + RK I   ++             
Sbjct: 296 LTKTPGGAK-VYRFGGEEFTIVFKGKYADECKNFLEEARKSIAEYEMILRDEESRPENHK 354

Query: 209 --------NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
                   N S   S+ +T S G+A+  + +    +I  AD+ALY AKK+GRN
Sbjct: 355 QGQKRRGSNSSKRKSVFVTASFGVADSRNGQAPLDVIKLADEALYKAKKAGRN 407


>gi|119487017|ref|ZP_01620889.1| regulatory components of sensory transduction system [Lyngbya sp.
           PCC 8106]
 gi|119455946|gb|EAW37080.1| regulatory components of sensory transduction system [Lyngbya sp.
           PCC 8106]
          Length = 321

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 85/166 (51%), Gaps = 13/166 (7%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+ +D L+ + N   F  +L           + L ++  DID FK  ND FGH  GD+ +
Sbjct: 145 LATLDGLTKIPNRRCFDETLNQEWLRLCREQKSLHLILCDIDCFKNYNDTFGHIAGDQCL 204

Query: 156 AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG- 213
             ++  L  V   P   V R GGEEFA     +S Q A  +A  +++ ++   I  S+  
Sbjct: 205 IKVAQTLYEVVRRPADLVARYGGEEFAIILPNTSAQGAIYIAERIQEAMQKLAIPHSASL 264

Query: 214 PSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S ++T+S GIA     C + P+S +I  +DQALY AK  G+NR +
Sbjct: 265 VSSYVTLSMGIAGGIPCCEESPLS-LIDISDQALYQAKMEGKNRFI 309


>gi|78484845|ref|YP_390770.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78363131|gb|ABB41096.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2]
          Length = 458

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 9/158 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G  N  AF       ++    ++  L +V  D+D+FK +ND  GH VGD V+  ++
Sbjct: 288 DSLTGFPNRRAFDLEFEKALAFAKRHDFWLDLVVVDVDFFKAVNDEHGHVVGDAVLKRVA 347

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L  V  T   + R GGEEF    L    + + +LA  +RK +E+      +   + +T
Sbjct: 348 EILDDVARTEDMLFRWGGEEFVIITLDKDSEGSEMLAERIRKAVEDEVFFAGTDQEMRLT 407

Query: 220 ISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
           +S G         +S   +   AD+ LY+AK+SGRN+V
Sbjct: 408 VSCGALSYWAGLSLSEEEVFELADKQLYLAKESGRNQV 445


>gi|297581532|ref|ZP_06943455.1| GGDEF family protein [Vibrio cholerae RC385]
 gi|297534370|gb|EFH73208.1| GGDEF family protein [Vibrio cholerae RC385]
          Length = 312

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 8/167 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFI--SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           IS     + S+ID L+ L N   F   S   +    L ++ FDID+FKQIND +GHP GD
Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPETLLGLIIFDIDHFKQINDTYGHPAGD 205

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L           R GGEEF              LA ++R  +E+  + +  
Sbjct: 206 YVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANVIGLAENIRGYVESHTL-MWQ 264

Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  I +T+SAG    A   H      +++ ADQAL  AK+ GRNRV+
Sbjct: 265 GQQIALTLSAGCTMGAMMSHN--WDNLLHTADQALLSAKRLGRNRVI 309


>gi|152966403|ref|YP_001362187.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151360920|gb|ABS03923.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 683

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 84/163 (51%), Gaps = 13/163 (7%)

Query: 107 DCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL N    S F++ + S  +++ ++F D+D FK +ND+ GH  GD+++  ++++L 
Sbjct: 195 DALTGLANRTQLSEFLTRVLSRRDQVGVLFVDLDDFKNVNDSRGHAAGDQLLLAVAERLR 254

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   V RLGG+EFA    G +     +    L  + +   ++   G  IH+  S G
Sbjct: 255 ACVRGSDLVARLGGDEFAVVIHGGAAPARRVGERFLASLAQPVDVD---GQPIHVHASLG 311

Query: 224 IAERC-------HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            A+           +  + ++  AD A+Y AK +G+NR+V +S
Sbjct: 312 TADTATLCGTLSELDTATELLRNADLAMYWAKAAGKNRLVAYS 354


>gi|330958705|gb|EGH58965.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 524

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 81/165 (49%), Gaps = 11/165 (6%)

Query: 107 DCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L      +  E+  LS++  D D+FK+ ND++GH  GD+ +  L+
Sbjct: 336 DKLTGLANRRRFDQFLDVEFKRARRERSMLSLILIDADHFKRYNDHYGHLAGDECLVTLA 395

Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +      P  V  R GGEE A     + E  A  +A  + K I+N +I     P   +
Sbjct: 396 RLVEQCIRRPCDVAARYGGEEMAVVLPDTDESSARQVAESILKSIQNERIEHPDSPYGIV 455

Query: 219 TISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           T+S G+A       ++    +I  AD+ALY AK  GRNRV   S+
Sbjct: 456 TVSLGVATFIGTDRQQDQRGLIELADRALYAAKSQGRNRVNVASE 500


>gi|329906325|ref|ZP_08274386.1| putative signal peptide containing protein [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327547303|gb|EGF32143.1| putative signal peptide containing protein [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 862

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 14/170 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
           ++++ LS  D L+GL N   F   L S           L+++  D+D+FK+ ND +GH  
Sbjct: 690 DKLATLSATDGLTGLANRRHFDEILASEWGRASRTGMPLAVLMIDVDHFKKFNDCYGHQA 749

Query: 151 GDKVIAFLSDQLVVVFGTPM---FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           GD  +  ++  L    GT        R GGEEF+     +    A  LA+ +R  IE   
Sbjct: 750 GDACLRRIAAALQA--GTRRSSDLAARYGGEEFSIVLPNTDGSTAWQLADVVRGAIEQLA 807

Query: 208 INISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRV 255
           +  +  PS  +TIS G+A      P  ++ ++  AD ALY+AK +GRNRV
Sbjct: 808 MPHARAPSGLVTISIGVAICRAGSPGSVAGLLRAADDALYLAKDAGRNRV 857


>gi|313681787|ref|YP_004059525.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313154647|gb|ADR33325.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 612

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 69/132 (52%), Gaps = 2/132 (1%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DIDYFK +ND +GH  GD VI  LS+ LV          R GGEEF      ++ 
Sbjct: 473 AVLMIDIDYFKMVNDTYGHDAGDVVIKSLSEILVQSIRKADLPVRYGGEEFLVLLHNTTP 532

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAK 248
           + A  +A  +R +  + +    +  SI  T+S GIA      + I  +I  AD ALY  K
Sbjct: 533 EGALGVAEKIRTVFNDKKFQFGN-DSIQKTLSIGIAHFPTQADSIWKVIKFADIALYEGK 591

Query: 249 KSGRNRVVCFSD 260
            +GRNRV+ F D
Sbjct: 592 HTGRNRVIEFED 603


>gi|307298756|ref|ZP_07578559.1| diguanylate cyclase with PAS/PAC sensor [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915921|gb|EFN46305.1| diguanylate cyclase with PAS/PAC sensor [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 613

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 14/165 (8%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +L+  D L+G++N  +    L         Y+  LS++ FD+D  K +NDNFGH  GD 
Sbjct: 451 KKLATTDMLTGVMNRYSLTELLKLETERSRRYSAPLSLIMFDLDNLKTVNDNFGHLAGDD 510

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS- 212
            +      +     +   +GR GG+EF   A  +  + A  +A  LR  +  S I+    
Sbjct: 511 ALKVTCSFVQSNIRSCDDIGRWGGDEFLIVATNTDLEGAVKMAEKLRSGL--SSIDKKEY 568

Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
           GP   +TIS G+      E     ++ RAD+ALY +K+SG+NRV 
Sbjct: 569 GP---LTISIGVTTLLENESDFDGLLRRADEALYESKRSGKNRVT 610


>gi|311235158|gb|ADP88012.1| diguanylate cyclase with hemerythrin-like metal-binding domain
           protein [Desulfovibrio vulgaris RCH1]
          Length = 613

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 11/166 (6%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q + ID L+GL N + F       +  L   +  LS++ FD D+FK  ND +GH  GD  
Sbjct: 290 QRAGIDPLTGLCNRARFDEVLLAELQRLQRQDSPLSLMMFDADHFKPYNDMYGHVAGDAC 349

Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  ++  L  V       V R GGEEF     G+    A  LA  +R+ +    I     
Sbjct: 350 LKRVAGVLRAVAHRASDVVARYGGEEFVCILPGTDRDSAYALAEKVRQGVRALAIPHVGS 409

Query: 214 PSIHI-TISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           P   + T+SAG+     C       ++ + D+ALY AK +GR+RV+
Sbjct: 410 PVAGVLTVSAGVVTVHGCDGLDPQEVVAQVDRALYQAKGAGRDRVM 455


>gi|226303624|ref|YP_002763582.1| hypothetical protein RER_01350 [Rhodococcus erythropolis PR4]
 gi|226182739|dbj|BAH30843.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
           PR4]
          Length = 796

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 86/180 (47%), Gaps = 12/180 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFK 140
           GS + E +    RI  L+  D L+GL N   F + L          E++ +   D+D FK
Sbjct: 356 GSDITEKYNYERRILWLAATDGLTGLPNRRTFGTELSDALGAVRTGEQVLVGILDLDNFK 415

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND  GHPVGDK++  ++ +L  V    M   R+GG+EF     G+ +    + A  L 
Sbjct: 416 SVNDTLGHPVGDKLLISVAARLNRVVDGAM-CARIGGDEFGVVLRGTGDG-GEVFARYLG 473

Query: 201 KIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + E   +    G  I +  S G A      E   T++  AD ALY AK +G+NRV  +S
Sbjct: 474 ALREPFFVR---GNRIEVRASIGYASSPADSEDADTLVMSADLALYAAKSAGKNRVGKYS 530


>gi|119899156|ref|YP_934369.1| GGDEF/PAS/PAC-domain-containing protein [Azoarcus sp. BH72]
 gi|119671569|emb|CAL95482.1| GGDEF/PAS/PAC-domain containing protein [Azoarcus sp. BH72]
          Length = 342

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 108/226 (47%), Gaps = 15/226 (6%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLLLG--YISGSILKELFIS 96
           V  +A++   Y  +      E+ L E   +L  ++ + T  L      +S ++ K L  S
Sbjct: 110 VTALADVTALYDTIDRLRDSEHRLQELNADLEHLVAARTAELAERNRELSDAVAK-LEAS 168

Query: 97  YNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
             R+  L+  D L+GL N +     +  + +      ++F D+D FK +ND  GH  GD 
Sbjct: 169 RARVEHLALHDPLTGLPNRTQLRQVLDEMLALPGSFGVLFIDLDGFKPVNDTLGHDSGDL 228

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQINIS 211
           V+  ++ +L        FVGRLGG+EF  A L  +++ AA    +  K+I    + I I 
Sbjct: 229 VLVTVAQRLREALPAECFVGRLGGDEF-VAVLPHTDRAAACAVGE--KLIAALAAPIVIE 285

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G    +  S G+A    H     +++  AD+A+Y AK+SG+ RV 
Sbjct: 286 GGAQCQLGASIGVALGPQHGRNRRSLLTAADRAMYAAKRSGKGRVA 331


>gi|262373376|ref|ZP_06066655.1| GGDEF domain-containing protein [Acinetobacter junii SH205]
 gi|262313401|gb|EEY94486.1| GGDEF domain-containing protein [Acinetobacter junii SH205]
          Length = 429

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 2/133 (1%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            +  + +  D+D+FK++ND +GH +GDK + +   ++  +      +GRLGGEEFA    
Sbjct: 294 QQTTAFLMLDLDHFKKVNDTYGHQMGDKALKYCVQEIHSLLRPNDLLGRLGGEEFAIFMS 353

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQA 243
                 A   A ++R  I    I ++     +I +S GI      +++ I  +  +AD A
Sbjct: 354 DIDPDTAFQYAENIRLNISKMPIPLNDQQQFYIQVSIGICLCTPENQQSIDALFKQADDA 413

Query: 244 LYVAKKSGRNRVV 256
           LY AK  GRN+VV
Sbjct: 414 LYQAKHQGRNQVV 426


>gi|73539291|ref|YP_299658.1| GGDEF [Ralstonia eutropha JMP134]
 gi|72122628|gb|AAZ64814.1| GGDEF [Ralstonia eutropha JMP134]
          Length = 419

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 9/164 (5%)

Query: 101 SQL---SRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           SQL   S+ D L+ L N   F         G  +  +S++ FD+D+FK IND +GH  GD
Sbjct: 245 SQLLLESQTDYLTRLGNRRWFFEQGSRILDGGASGPVSVLAFDLDHFKAINDLYGHQTGD 304

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KV+   ++    V G    + R+GGEEFAA   G     A  L   + ++   +  + + 
Sbjct: 305 KVLKSFAETARSVVGADAILARIGGEEFAAVLSGHDAARAQSLGESVARLFAETTSSRTD 364

Query: 213 GPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255
              +  T+S G+A    + P +   +  ADQALY AK  G NR+
Sbjct: 365 SLGVPATVSIGLAHFEDEVPALVEGLAAADQALYRAKSLGGNRL 408


>gi|10957409|ref|NP_051626.1| GGDEF family protein [Deinococcus radiodurans R1]
 gi|6460838|gb|AAF12542.1|AE001826_11 GGDEF family protein [Deinococcus radiodurans R1]
          Length = 364

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 72/161 (44%), Gaps = 9/161 (5%)

Query: 107 DCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+G L+       LG     S  E+  ++  D+D+FK +ND++GH  GD+ +  +   
Sbjct: 208 DALTGTLSRRGLEKKLGTLWRTSSPEQTLLLMVDVDHFKGVNDSYGHLTGDQALQMIGVT 267

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L         +GR GGEEF       S +E   +   L   I    + +   P   +TIS
Sbjct: 268 LRAAASEHALIGRWGGEEFVMVLPCQSAREHQQVTEQLLHTIRT--LRVDHLPP--LTIS 323

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           AG A       +  +I  AD  LY AK  GRNR V    +E
Sbjct: 324 AGGATFAEAPSLEAVIAMADSRLYQAKDGGRNRAVLPVPVE 364


>gi|296387790|ref|ZP_06877265.1| two-component response regulator [Pseudomonas aeruginosa PAb1]
          Length = 342

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L   D L+GL N   F   L            +LS++  D+DYFK  ND FGH  GD
Sbjct: 167 LQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGD 226

Query: 153 KVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  ++  +      +     R GGEEFA    G+S   A +LA  +R+ +E+ QI + 
Sbjct: 227 EALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHD 286

Query: 211 SSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              P  ++T+S G++        +    +I  ADQALY AK +GRN+V
Sbjct: 287 QPRPGSYLTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGRNQV 334


>gi|257095583|ref|YP_003169224.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Candidatus Accumulibacter phosphatis clade IIA str.
            UW-1]
 gi|257048107|gb|ACV37295.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Candidatus Accumulibacter phosphatis clade IIA str.
            UW-1]
          Length = 1399

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 83/172 (48%), Gaps = 14/172 (8%)

Query: 99   RISQLSRIDCLSGLLNHSAFISSLGS---------YNEKLSIVFFDIDYFKQINDNFGHP 149
            +IS L+  D L+ L N S     L           +   ++++F D+D FK IND  GH 
Sbjct: 966  KISHLAHFDTLTDLPNRSNLQGRLDQALASARREGHGRSVAVMFLDLDRFKNINDTLGHH 1025

Query: 150  VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS-QI 208
            VGD ++  ++ +L         V RLGG+EF     G+    A  +A  + K +  + QI
Sbjct: 1026 VGDALLLEVAARLRSSVRDSDVVARLGGDEFVVVLTGADALAAERVAGKILKALSRAYQI 1085

Query: 209  NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                G ++H T S GIA      E +  ++  AD A+Y AK +GRN V  F+
Sbjct: 1086 ---EGHALHSTSSIGIAVFPADGESVEVLMQNADAAMYHAKSAGRNNVQFFT 1134


>gi|242278020|ref|YP_002990149.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfovibrio
           salexigens DSM 2638]
 gi|242120914|gb|ACS78610.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfovibrio
           salexigens DSM 2638]
          Length = 495

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 11/162 (6%)

Query: 107 DCLSGLLNHSAFISSLGSY-----NE--KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N   F   L  +     NE  +LS++FFDID+FK++ND +GH  GDK +  L+
Sbjct: 331 DPLTGVTNRRLFEHRLQEFIDHSINEGTELSVLFFDIDHFKELNDKYGHQAGDKGLRHLA 390

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-I 218
                       + RLGG+EF      +  + A+ +   L   ++++         IH +
Sbjct: 391 KICESYLRHNDILARLGGDEFVLLLPKTDPKTASAIGKRLLDAVKSTPFEYDG--KIHRM 448

Query: 219 TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           TIS G+A    +    + +I RAD ALY AK+ GRNR+   +
Sbjct: 449 TISIGLASNDGRLTTPARLIERADTALYEAKQRGRNRLETLT 490


>gi|205374348|ref|ZP_03227146.1| diguanylate cyclase with GAF sensor [Bacillus coahuilensis m4-4]
          Length = 185

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 74/141 (52%), Gaps = 8/141 (5%)

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           + LS++  DID+FKQIND +GH  G++++  LS +L    G    V R GGEEF      
Sbjct: 43  QNLSLILLDIDHFKQINDTYGHQAGNEILIDLSRRLQNFIGKKGTVARFGGEEFVVLLPD 102

Query: 187 SSEQEAAILANDLRKIIENSQINISS------GPSIHITISAGIAER-CHKEPISTIIYR 239
             + EA  LA   R  +E+    +           ++IT S G++      +  + ++  
Sbjct: 103 FEKNEAVELAEQFRLSLESEPFPVHDTMVAPLNDRVYITASFGVSSAFLDSDDETALVRN 162

Query: 240 ADQALYV-AKKSGRNRVVCFS 259
           AD+ALYV AK+ GRN+V  +S
Sbjct: 163 ADRALYVGAKQKGRNKVASYS 183


>gi|254422604|ref|ZP_05036322.1| GGDEF domain protein [Synechococcus sp. PCC 7335]
 gi|196190093|gb|EDX85057.1| GGDEF domain protein [Synechococcus sp. PCC 7335]
          Length = 768

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 103/255 (40%), Gaps = 41/255 (16%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS-------- 96
           + ++ +  + +  F GLE   V         I I  L  + +  I++E+F +        
Sbjct: 512 LPDLLILDLEMPQFNGLELCQVIRSDPRTAQIPILFLSAHTAPEIVREVFEAGADDYISK 571

Query: 97  -----------YNRIS------QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIV 132
                       NR+       +L+ ID L+GL        +L             L + 
Sbjct: 572 PVVDHELIGRILNRLERQRLLRKLAEIDSLTGLSRRRQSAETLERLLRLSVRQGVPLCMA 631

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FKQIND +GH VGD+V+   ++ L   F     V R GGEEF       S++ +
Sbjct: 632 LLDLDHFKQINDRYGHDVGDQVLKVFAEYLRNSFRGEDVVARWGGEEFVVGLYNVSKERS 691

Query: 193 AILANDLRKIIENSQINISSGP--------SIHITISAG-IAERCHKEPISTIIYRADQA 243
               N LR+          S             +++S G +      E +  +  RADQA
Sbjct: 692 LQRLNTLRESFGQHIFQAKSSAFYQSDLLLEFQVSLSGGMVTAPADGETVEMLYRRADQA 751

Query: 244 LYVAKKSGRNRVVCF 258
           LY AK +GRN++  F
Sbjct: 752 LYRAKAAGRNQICIF 766


>gi|148554415|ref|YP_001261997.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Sphingomonas wittichii RW1]
 gi|148499605|gb|ABQ67859.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Sphingomonas wittichii RW1]
          Length = 741

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 94/184 (51%), Gaps = 22/184 (11%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           ++L  + ++   L+  D L+GL N + F   L           E L++V+ D+D+FK +N
Sbjct: 305 RQLSAAKSQAQHLADHDPLTGLANRALFERRLNERLGEICLTGETLALVYVDLDHFKNVN 364

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILAND 198
           D+ GHP GD++I  L+D ++        V RLGG+EFA       +  ++EQ A  +   
Sbjct: 365 DHLGHPTGDQLIRALAD-ILSELAPGDVVARLGGDEFAIIHGSDNSAATAEQLARSIHRT 423

Query: 199 LRKIIE--NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           L + I+  N ++ I +   + +    G+ +R        ++ +AD ALY AK+ GR R  
Sbjct: 424 LARPIDLGNGEVLIGASIGVAVAPQDGL-DRVE------LVRKADIALYDAKRGGRRRHS 476

Query: 257 CFSD 260
            ++D
Sbjct: 477 FYAD 480


>gi|320162522|ref|YP_004175747.1| putative signaling protein [Anaerolinea thermophila UNI-1]
 gi|319996376|dbj|BAJ65147.1| putative signaling protein [Anaerolinea thermophila UNI-1]
          Length = 782

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 107/232 (46%), Gaps = 26/232 (11%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE 92
           +F ++++   +  A IFLF   L   +  E    E   L +I   +SL L          
Sbjct: 552 LFTALYVKGEVLGA-IFLFTRDLARKFTAE----EKELLEVIGAQMSLALANA------- 599

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
             +S+     L+ +D L+G+ N   F       +     Y    +++  D+D+FK+ ND 
Sbjct: 600 --LSFREQQILAELDSLTGIYNRRKFFEIAAAELERSARYLRPCALLMMDLDHFKEYNDT 657

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GD+++A L+            + R GG+EF      +++  A  +A  L + +  
Sbjct: 658 FGHQAGDQLLAELAQTFRRSLREFDTLARYGGDEFILLLPETTQDSALRVAERLLRRVRE 717

Query: 206 SQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNR 254
               I    +I +++S GIA  C   H   + +++  AD+ALY AK++GR+R
Sbjct: 718 KNAGIPEPHAIPLSLSIGIA--CFPQHARDLGSLLKCADEALYRAKQNGRDR 767


>gi|261820598|ref|YP_003258704.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
 gi|261604611|gb|ACX87097.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
          Length = 307

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 81/158 (51%), Gaps = 7/158 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF-DIDYFKQINDNFGHPVGDKVIAF 157
           RI   S  D L+ L N   FI+ L +   K+  +F  DID FK IND +GH  GD++++ 
Sbjct: 145 RIQSFS--DELTQLPNRRFFINELKNLEAKIPYLFIIDIDNFKTINDRYGHTKGDEILSK 202

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
               L     + +   R+GGEEFA      ++ +A  LA   RK+++N+   I      H
Sbjct: 203 FGHILSRFDNSEVVATRIGGEEFAMILYTGTQDQAEALA---RKVLKNANKIIIKNMQ-H 258

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +++S G   +  +E     + R D ALY AK +G+ +V
Sbjct: 259 LSVSIGAGRKQPQESTEHFMTRVDIALYQAKTTGKGKV 296


>gi|222148194|ref|YP_002549151.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221735182|gb|ACM36145.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 674

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 12/170 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +LS  D L+G+ N  A    L        S     + +  D+D+FK+ ND +GH  GD  
Sbjct: 228 RLSNTDYLTGVENRRAIDQRLRDNWAEWQSSGTGFAAILVDVDFFKKYNDYYGHQAGDHC 287

Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISS 212
           +  +++ L   +      +GR GGEEF   A  +S  +  +LA  +R  +E  S ++   
Sbjct: 288 LVLVANALKTALLPFNASIGRYGGEEFIVLAPAASRDDVGLLAEMIRNTVEKMSLVHDQR 347

Query: 213 GPSIH-ITISAGIA-ERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
              I+ +T+S G A  R H  P +  II  AD+ALY AK +GRN V  F 
Sbjct: 348 KDGINVVTVSVGAAFTRPHFGPRLEKIITEADRALYSAKANGRNCVRLFD 397


>gi|220923552|ref|YP_002498854.1| diguanylate cyclase/phosphodiesterase [Methylobacterium nodulans
           ORS 2060]
 gi|219948159|gb|ACL58551.1| diguanylate cyclase/phosphodiesterase [Methylobacterium nodulans
           ORS 2060]
          Length = 526

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 114/227 (50%), Gaps = 31/227 (13%)

Query: 43  IFIA-NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101
           +F A N+F+   GL+  +   + ++  L+LV +++  SL L      +++E  ++     
Sbjct: 36  VFAAFNLFILQHGLSDLF--TFAMLMGLTLVGVTVRKSLKLR----RVMRERDMAAAHAE 89

Query: 102 QLSRIDCLSGLLNHSAFISSL-----GSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            ++R D L+GL N    + ++     G ++    +++  DID FK +ND +GH  GD V+
Sbjct: 90  AVARHDALTGLANRRLLLEAIDKLLAGDHSPVSGAVLLIDIDRFKPVNDLYGHAAGDAVL 149

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFA---AAALGS------SEQEAAILANDLRKIIENS 206
             ++D+L  +  +     RLGG+EFA    A LGS      +EQ  A +A    + +E +
Sbjct: 150 CAIADRLRSLAPSQGLAARLGGDEFALLVRAELGSEALARLAEQVIASIA----RPVEWA 205

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           Q  +  G +I IT+ +      H      I++ AD A+Y  KK GR 
Sbjct: 206 QAELKVGATIGITLISRDDLDAH-----AIMHAADLAMYQGKKEGRG 247


>gi|144898061|emb|CAM74925.1| response regulator [Magnetospirillum gryphiswaldense MSR-1]
          Length = 312

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 10/174 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQIN 143
           ++L  ++ R+ QL+ +D L+G  N   F   +    E+        +++  D+D+FK+IN
Sbjct: 128 RDLRRAHERLQQLAALDYLTGTFNRGHFEMLVNRELERAERSGLTGALLLIDLDHFKRIN 187

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+V+  ++D  +    +   +GR+GGEEFA     +   EA  +A  L +  
Sbjct: 188 DTHGHAAGDQVLISVADAWLRELRSCDILGRVGGEEFAVFLPETGGTEATNIAARLLQRT 247

Query: 204 ENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  I      ++ IT S G A    C  + + T++  AD+ LY AK++GR+R+
Sbjct: 248 RDLPIVWEGRQTLRITASIGGAWPVDCALD-LKTLMKAADRLLYRAKQAGRDRI 300


>gi|157962018|ref|YP_001502052.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157847018|gb|ABV87517.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
          Length = 438

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 78/154 (50%), Gaps = 9/154 (5%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           S ID LSG      F+S   S N   S+   DID+FK+IND +GH VGD VIA +++++ 
Sbjct: 288 SSIDRLSGFYRKDGFMSKKMSVN---SMCLIDIDHFKKINDTYGHVVGDIVIAEVANRIK 344

Query: 164 VVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
               +     R GGEEF     G  S ++    AN L   I +  IN      I +TIS 
Sbjct: 345 NSMRSTDLAIRWGGEEFVVIFNGELSFEQFNSKANGLLSTINSETIN-----DIAVTISI 399

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G      +  +    + +D+ALY +K SGRN+V 
Sbjct: 400 GAIYSQSEMKLQEAFHLSDEALYESKNSGRNKVT 433


>gi|28900780|ref|NP_800435.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|28809226|dbj|BAC62268.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633]
          Length = 414

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 24/174 (13%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           QL+  D L+ + +  A    L     K +I   D+D+FK+ ND +GH +GD V+  ++ +
Sbjct: 236 QLAFTDSLTQIPSRRALDLDLKHMGRKFTIAMLDVDHFKKFNDTYGHDIGDDVLKMVASR 295

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSIH- 217
           L+   G    V R GGEEF     G + ++      + RK I   ++   + +S P  H 
Sbjct: 296 LMKTRGGAK-VYRFGGEEFTMVFKGKNVEDCRQYIEEARKAIAEYEMILRDKASRPDDHK 354

Query: 218 -----------------ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
                            +T S G A+ R  +EP + +I  AD ALY AKK+GRN
Sbjct: 355 QGQQNRGTEDMQRESVFVTASFGAADSRNGREP-AEVIKLADAALYKAKKAGRN 407


>gi|88800852|ref|ZP_01116407.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Reinekea sp. MED297]
 gi|88776425|gb|EAR07645.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Reinekea sp. MED297]
          Length = 857

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 91/173 (52%), Gaps = 12/173 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  L+  D L+ L N   F+  L           +  +++F D+D FK IND  GH  GD
Sbjct: 416 IQHLAYHDALTDLPNRHLFLDRLDQALLRTQRSKQYGALIFVDLDNFKTINDTKGHLAGD 475

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILANDLR-KIIENSQIN 209
            V+A ++++L   F     V RLGG+EF      LG +EQEA  +A+D   K+++  +  
Sbjct: 476 AVLADVAERLKHAFREVDTVARLGGDEFVICMTDLGRTEQEAYDIAHDRSVKLMDAMKRP 535

Query: 210 I-SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + G  + ++ S G+A    H    S ++  AD A+Y AK++G+NR++ F +
Sbjct: 536 FQTQGDQLIVSASLGLAFFHDHSLTASELLSHADMAMYRAKETGKNRIILFQE 588


>gi|327193126|gb|EGE60036.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 422

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 11/173 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHS-----AFISSLGSYNEKLS--IVFFDIDYFKQINDNFGHP 149
           YN + + +  D L+G+ + +     A +    +  + LS  ++  D D+FK +ND +GH 
Sbjct: 249 YNDLLERTGRDMLTGVYDRTRMELEAPLMLREALRQGLSATVLIIDADHFKDVNDGYGHL 308

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++ +L     +   + R GGEEF A   G++ +E  +LA  LR  I  S   
Sbjct: 309 QGDVVLKSIAARLGTTLRSSDRIFRFGGEEFVAVCPGTNHEEGLLLAERLRWTIATSVKT 368

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
               P   +T+S G+A         +T++  AD  LY AKK GRN VV  S +
Sbjct: 369 PDGSP---VTVSIGVATADEDGTSFTTVLSAADGRLYAAKKGGRNCVVGRSGL 418


>gi|296449740|ref|ZP_06891510.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296877943|ref|ZP_06901962.1| probable signaling protein [Clostridium difficile NAP07]
 gi|296261464|gb|EFH08289.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296431011|gb|EFH16839.1| probable signaling protein [Clostridium difficile NAP07]
          Length = 537

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 16/176 (9%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
            Y  +   +  D L+ + N   F        + + G   + L I+  D+D FK+INDNFG
Sbjct: 362 KYEELKTRAESDSLTNIYNKGTFEKLVEETIVMNTGDKKDALFII--DLDDFKEINDNFG 419

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206
           HP GD V+   +D++   FG+   VGR+GG+EF        +E      A +L +++ ++
Sbjct: 420 HPFGDFVLKTFADKIQASFGSRDLVGRIGGDEFVVYMQDYVTEVNLHKKAKELNRVLSDN 479

Query: 207 QINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260
             ++S   S   ++S GIA R  ++  S   +   AD+ALY  K SG+N    F +
Sbjct: 480 YTDLSF--SFDASVSIGIA-RYPQDGTSFFELFKNADRALYSIKASGKNSYCLFEE 532


>gi|315500371|ref|YP_004089174.1| diguanylate cyclase/phosphodiesterase [Asticcacaulis excentricus CB
           48]
 gi|315418383|gb|ADU15023.1| diguanylate cyclase/phosphodiesterase [Asticcacaulis excentricus CB
           48]
          Length = 657

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 106/217 (48%), Gaps = 16/217 (7%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L    G   +LV NL+L   ++++   L  ++  +  ++     R+++L+  D L+GL N
Sbjct: 182 LVTLRGNHRLLVRNLTLEDRNLSLIKQLSEVNQVLEAKVSERTERLARLAHTDKLTGLFN 241

Query: 115 HSAFI----SSLGSYNEKLSIVFF-DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
                      + +  +  ++VFF D+D FKQ+ND   H  GDKV+  ++ Q+  V    
Sbjct: 242 RYGLFDWHQKRIEAEPKTRTVVFFLDLDRFKQVNDALSHEAGDKVLTAIAQQIESVAPPQ 301

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS---QINISSGPSIHITISAGIAE 226
             + R GG+EF  A   + +  A  L +++ + +  +    +NI  G  + + +S G A 
Sbjct: 302 ARLARWGGDEFVLACPVTGDVHA--LVDEVSEAVSRAVDIPLNI-EGTDLKLGVSIGWA- 357

Query: 227 RCHKE---PISTIIYRADQALYVAKKSGRNRVVCFSD 260
            CH +     S I++ AD A    K+SGR R + F +
Sbjct: 358 -CHPDHDKTFSDIVHAADLATTEVKRSGRGRTLAFDE 393


>gi|254457680|ref|ZP_05071108.1| cache sensor signal transduction histidine kinase
           [Campylobacterales bacterium GD 1]
 gi|207086472|gb|EDZ63756.1| cache sensor signal transduction histidine kinase
           [Campylobacterales bacterium GD 1]
          Length = 642

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 11/163 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           + S  D L+G+ N S     +         Y + LS++  DID+FK+IND  GH VGD+V
Sbjct: 483 KKSLTDPLTGVYNRSKAEDVMSHEINLAKLYGQPLSLIMLDIDHFKEINDTLGHAVGDEV 542

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +      +     +   V R GG+EF      +  ++AA+ A ++R +IE++        
Sbjct: 543 LVEFIKVINNNSRSNDIVIRNGGDEFLIICPNTEAKDAALHAENIRSLIESNNY----KK 598

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             ++T S G+      +    I  R D+ALY+AK+ GRN VV 
Sbjct: 599 DYNVTSSIGVTSYQTGDTKEAIFKRVDKALYIAKEKGRNCVVS 641


>gi|21106717|gb|AAM35503.1| GGDEF family protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 326

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 83/180 (46%), Gaps = 19/180 (10%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF-----------ISSLGSYNEKLSIVFFDIDYFKQI 142
           F +Y  +   ++ + L+GL N   F             S       L IV  DID+FK++
Sbjct: 135 FQNYRSLLDDAQRNALTGLRNRKTFDDVILRLFAGGADSAAEQGVWLGIV--DIDHFKRV 192

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH  GD+V+  ++  +   F     + R GGEEF     G     A  L    R  
Sbjct: 193 NDTFGHLYGDEVLLLVAQLMQRAFRQDDLLFRFGGEEFVIVLRGVDRDTAVSLFERFRLA 252

Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +          P +  +T+S GI E  H   IS ++  AD+ALY AK++GRNR   ++++
Sbjct: 253 VAEHLF-----PQVGQVTLSTGIVELTHGRLISEMLDEADKALYWAKQNGRNRAAVYAEL 307


>gi|327183909|gb|AEA32356.1| regulator component [Lactobacillus amylovorus GRL 1118]
          Length = 374

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 9/166 (5%)

Query: 107 DCLSGLLNHSAFISSLGSY-NEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GLLN+ AF   + +   EK S    +   D+D+FK +ND +GH  G+ V+   S +
Sbjct: 209 DDLTGLLNYRAFAQDMRNLAREKDSTPVLLAILDLDHFKNVNDTYGHLNGNVVLRAFSRK 268

Query: 162 LVVV----FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           L       F +   V R GGEEF       S  +   L N+L +   +  + I  G  I+
Sbjct: 269 LESEVHHNFDSNCAVYRFGGEEFTIVVKDDSYAKVIKLLNNLNEYFASHPVKIPDGQQIY 328

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            + S G+      E     + RAD  +Y AK  GR R++  S  ++
Sbjct: 329 FSFSGGLTRHLEDETFDQTLARADTLVYQAKNLGRRRILYKSKTDD 374


>gi|306841742|ref|ZP_07474428.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2]
 gi|306288147|gb|EFM59534.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2]
          Length = 461

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 81/170 (47%), Gaps = 9/170 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S  R    S  D L+GL N           ++      + LSI+  D+D+FKQ+N+ +GH
Sbjct: 288 SMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQYGH 347

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+   S +L         + R GGEEF      +  Q A  +A  +R I+  +  
Sbjct: 348 GAGDHVLREFSARLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRGIVAEAPF 407

Query: 209 NISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            + +G     +T+S GIA  R   + +  +  RA  AL  AK+SGRNR+V
Sbjct: 408 VLDNGKRRASLTVSVGIAALRLAGDSLEALFTRATDALIQAKQSGRNRIV 457


>gi|254994902|ref|ZP_05277092.1| response regulator PleD [Anaplasma marginale str. Mississippi]
          Length = 455

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 9/162 (5%)

Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +++S  D L+G  N   F       ++      + LS++  D+D+FK++ND FGH VGD+
Sbjct: 291 AEMSITDPLTGCYNRRYFDMHFQNIVNEARDKGKDLSVMIIDVDHFKRVNDTFGHTVGDE 350

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  L  ++         + R GGEEF      +   +A   A  LR+ +     N S G
Sbjct: 351 LLQQLRKRIFDNIRISDLLARFGGEEFVIILPETGIDQAMTAAERLRQKVAEEPFNTSGG 410

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++  T+S G+AE    E     + RAD+ LY AK++ RN V
Sbjct: 411 -ALEKTVSIGVAEFRPSEEAKDFLNRADKCLYSAKET-RNAV 450


>gi|225568775|ref|ZP_03777800.1| hypothetical protein CLOHYLEM_04854 [Clostridium hylemonae DSM
           15053]
 gi|225162274|gb|EEG74893.1| hypothetical protein CLOHYLEM_04854 [Clostridium hylemonae DSM
           15053]
          Length = 363

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 15/175 (8%)

Query: 96  SYNRISQL-------SRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQIND 144
           +Y R+ QL       S  D L+ L N +         + S N +L  +  D+D FKQ ND
Sbjct: 181 TYGRLQQLNQKFEYLSNQDGLTKLSNRTYLERYKQKLMDSRNAELHALMLDVDCFKQYND 240

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKII 203
           N+GH  GD+V+  ++  +  +   P  +  R GGEEF      + ++EA   A  L + I
Sbjct: 241 NYGHMAGDEVLKSVAGVINGLTADPDSIAVRYGGEEFLILLQEAGQKEAETFARTLLRKI 300

Query: 204 ENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVV 256
            + +I   +G   ++++S GI+ +    +E    ++ +AD+ALY AK+SGRN ++
Sbjct: 301 HDLKIPHITGDG-YVSVSIGISRQYVSSEEKFLDLLKQADEALYCAKQSGRNCII 354


>gi|217328412|ref|ZP_03444494.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. TW14588]
 gi|217318839|gb|EEC27265.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. TW14588]
          Length = 296

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 129 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 188

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +         + R+GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 189 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 248

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 249 SIGAVVTQGNALNPNEIYRLADNALYEAKETGRNKVV 285


>gi|212637004|ref|YP_002313529.1| PAS:GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212558488|gb|ACJ30942.1| PAS:GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 845

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 86/164 (52%), Gaps = 12/164 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           NR++  SR++    L N S +         +L +++ D+D FKQ+N++FGH +GD+V+  
Sbjct: 426 NRMAVTSRLEQEIRLANRSEY---------QLGVIYIDVDLFKQVNESFGHVIGDEVLVE 476

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINISSGPSI 216
           LS +L +  G+   + RLGG+EFA         +  +L  + L +I E   +     P +
Sbjct: 477 LSQRLTLAIGSLATIARLGGDEFAVILPNIESSDMLLLRLSKLPQIFERPFMLGEHAP-V 535

Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +T S G+A         ST++  AD A++ AK+ GRN    ++
Sbjct: 536 RLTASMGVALYPQDGRDSSTLLVNADAAMHRAKQDGRNNYAFYT 579


>gi|121997174|ref|YP_001001961.1| response regulator receiver modulated diguanylate cyclase
           [Halorhodospira halophila SL1]
 gi|121588579|gb|ABM61159.1| response regulator receiver modulated diguanylate cyclase
           [Halorhodospira halophila SL1]
          Length = 308

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 14/177 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           +L    + + +LS+ D L+ L N       L          +  LS++  DID+FK  ND
Sbjct: 129 DLKRKTDALERLSQRDGLTDLPNRRVLDRQLPEEWSRCQRGDTPLSVIMMDIDHFKPYND 188

Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           ++GH  GD+ +  ++  L  V   T   V R GGEEF A    +   +A  +A   R  +
Sbjct: 189 HYGHGAGDECLRRVARVLANVPSRTTDLVARYGGEEFIALLPYTDAPDAWQMAERFRAAV 248

Query: 204 ENSQI--NISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255
              Q+    SS   I IT+S G+A      P  +   ++  ADQALY AKK+GRNRV
Sbjct: 249 AALQLPHGHSSTDGI-ITMSVGVASHTADRPYDSPEQLLEAADQALYAAKKAGRNRV 304


>gi|333007296|gb|EGK26778.1| hypothetical protein SFK272_1979 [Shigella flexneri K-272]
 gi|333019292|gb|EGK38576.1| hypothetical protein SFK227_1579 [Shigella flexneri K-227]
          Length = 410

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 316 RPLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISCLPRF--T 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409


>gi|302186775|ref|ZP_07263448.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 332

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 2/129 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+ +  DID FK +ND +GH  GD V+  +++            GR+GGEEFAA   G +
Sbjct: 203 LAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCA 262

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVA 247
              A  +A  L++ I+      S G +  IT S G+      +P + T+  RAD A+Y A
Sbjct: 263 PDMAMQIAERLQREIQRQNFQ-SGGTTFSITASQGLTNLGPDDPSLETLYGRADAAMYQA 321

Query: 248 KKSGRNRVV 256
           K+ G+N++V
Sbjct: 322 KRQGKNQIV 330


>gi|257789836|ref|YP_003180442.1| diguanylate cyclase [Eggerthella lenta DSM 2243]
 gi|325832333|ref|ZP_08165332.1| diguanylate cyclase (GGDEF) domain protein [Eggerthella sp. HGA1]
 gi|257473733|gb|ACV54053.1| diguanylate cyclase [Eggerthella lenta DSM 2243]
 gi|325486169|gb|EGC88623.1| diguanylate cyclase (GGDEF) domain protein [Eggerthella sp. HGA1]
          Length = 328

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 12/165 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           + + + +D ++ LLNH+AF     ++L    E  +    D+D FK +ND  GHP GD+VI
Sbjct: 170 MERRAELDSMTELLNHAAFEKYVAAALVEGGEGSAFFMIDLDNFKTVNDTLGHPEGDRVI 229

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGP 214
              +D L+ VF     VGR+GG+EFA  +    S +EA   A +L   IE +  + S+  
Sbjct: 230 QEFADVLLRVFPRDALVGRMGGDEFAVFSTCPLSVEEAQCKACEL---IE-AWGSHSASR 285

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++ +  S GI      E    +   AD ALY +K +G+    C+S
Sbjct: 286 AVELGCSVGIVRVVRGETFFDLYRAADCALYASKDNGKG---CYS 327


>gi|149180940|ref|ZP_01859442.1| hypothetical protein BSG1_00875 [Bacillus sp. SG-1]
 gi|148851459|gb|EDL65607.1| hypothetical protein BSG1_00875 [Bacillus sp. SG-1]
          Length = 396

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 16/165 (9%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQINDNFGHPVGDK 153
           +++  D L+  LN   FI+  G  + K        LS + FDID+FK+IND+ GH +GDK
Sbjct: 230 KMAAYDDLTNALNRRTFITR-GKQSLKDCVKNKIPLSFILFDIDHFKKINDSNGHNIGDK 288

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  + + +     +   +GR GG+EFA    G  + ++ + A ++ K IE + IN    
Sbjct: 289 VLINIVNCINERLSSNHLLGRYGGDEFAMLLPGMGDSDSTLFAENIIKDIEKAGIN---E 345

Query: 214 PSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  TIS G+       H   +  +    D+ALY+AK++GRN V
Sbjct: 346 IQLSYTISLGVLTVLPDTHTN-LDELYITCDKALYLAKENGRNCV 389


>gi|119896789|ref|YP_932002.1| GGDEF/PAS/PAC-domain-containing protein [Azoarcus sp. BH72]
 gi|119669202|emb|CAL93115.1| GGDEF/PAS/PAC-domain containing protein [Azoarcus sp. BH72]
          Length = 901

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 60/171 (35%), Positives = 89/171 (52%), Gaps = 13/171 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL---------SIVFFDIDYFKQINDNFGHPV 150
           + +L+ +D L+G  N  AF+    + +E+L         S+V  D+D+FK++ND +GH  
Sbjct: 728 LQRLATLDPLTGTWNRRAFLER--AEHERLRYLRSEHPASLVMLDLDHFKRVNDTWGHAA 785

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+      L         +GRLGGEEFA   + ++ + AA L   LR  I    + +
Sbjct: 786 GDAVLCHFVRVLQQRLRATDLLGRLGGEEFALLLVDTTPEGAAELTERLRAAIAEHPLPL 845

Query: 211 SSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260
               +I IT+SAGIA     +  +   + RAD ALY AK  GRN+VV   D
Sbjct: 846 GD-RTISITVSAGIAPFVQDDQNVEAALARADAALYRAKARGRNQVVLADD 895


>gi|89902369|ref|YP_524840.1| PAS/PAC sensor-containing diguanylate cyclase [Rhodoferax
           ferrireducens T118]
 gi|89347106|gb|ABD71309.1| diguanylate cyclase with PAS/PAC sensor [Rhodoferax ferrireducens
           T118]
          Length = 757

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 14/171 (8%)

Query: 100 ISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           I QL+  D L+GL N        H A +S       +L+++F D+D FK +ND+FGH  G
Sbjct: 568 IRQLAFYDPLTGLPNRRLLQDRLHQA-MSQARRERGRLALLFLDLDKFKPVNDDFGHQAG 626

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE--QEAAILANDLRKIIENSQIN 209
           D+++  ++ +L         V RLGG+EF    L S E  Q+A  +A  + +        
Sbjct: 627 DELLQAVAQRLQACVRESDTVARLGGDEF-VLLLPSIEAAQDAMAVAEKIHQAF-GRPFT 684

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +S+G +  ++ S GIA    H      ++  AD+A+Y AK +GR+R V F+
Sbjct: 685 LSAGRNATMSFSTGIAVYPEHASDEKALMRHADEAMYQAKAAGRDRFVLFA 735


>gi|317489294|ref|ZP_07947810.1| GGDEF domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|316911600|gb|EFV33193.1| GGDEF domain-containing protein [Eggerthella sp. 1_3_56FAA]
          Length = 328

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 12/165 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           + + + +D ++ LLNH+AF     ++L    E  +    D+D FK +ND  GHP GD+VI
Sbjct: 170 MERRAELDSMTELLNHAAFEKYVAAALVEGGEGSAFFMIDLDNFKTVNDTLGHPEGDRVI 229

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGP 214
              +D L+ VF     VGR+GG+EFA  +    S +EA   A +L   IE +  + S+  
Sbjct: 230 QEFADVLLRVFPRDALVGRMGGDEFAVFSTCPLSVEEAQCKACEL---IE-AWGSHSASR 285

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++ +  S GI      E    +   AD ALY +K +G+    C+S
Sbjct: 286 AVELGCSVGIVRVVRGETFFDLYRAADCALYASKDNGKG---CYS 327


>gi|293603221|ref|ZP_06685654.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Achromobacter piechaudii ATCC 43553]
 gi|292818452|gb|EFF77500.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Achromobacter piechaudii ATCC 43553]
          Length = 870

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 88/169 (52%), Gaps = 10/169 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI QL+  D L+GL N +         I+      ++++++F D+D FKQ+ND  GHP+G
Sbjct: 441 RIRQLAFYDELTGLPNRNLLLAQAEQSIARAEPERKRVAVLFLDLDRFKQVNDTLGHPIG 500

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++  ++ +L  +      VGRL G+EF    L    +   + A     ++  +Q    
Sbjct: 501 DALLRDVAQRLCRLARATDIVGRLSGDEF--VMLMPDFEHGRLTAAAEHILVALAQPFSV 558

Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            G +++ ++S GI+        + T++  AD A+Y AK +GRNR+  FS
Sbjct: 559 GGVTLNPSVSIGISVFPENGRDMDTLLRHADMAMYQAKTAGRNRISFFS 607


>gi|289433042|ref|YP_003462915.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Dehalococcoides sp. GT]
 gi|288946762|gb|ADC74459.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Dehalococcoides sp. GT]
          Length = 743

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 89/181 (49%), Gaps = 18/181 (9%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y + +  +  D L+ L NH  F       I+    +    S++  D+D FK  ND +GH 
Sbjct: 361 YTQATIRANTDELTRLYNHRHFHERIEQEIARGSRFGNTFSLILLDLDLFKVYNDVYGHL 420

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+++  L   L     +     R GGEEFA    G+  ++A  +A  +RK IE+    
Sbjct: 421 AGDQLLRRLGKILENSIRSIDMAFRYGGEEFAIMLPGTKIEDAYHVAERIRKNIESK--- 477

Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            SS   + IT S G+A    +   KE    II +AD ALY +K++GRNR    +D+ NN+
Sbjct: 478 -SSFRDMPITASLGLANWPTDGVMKE---EIIAKADAALYRSKETGRNRTSLPADLNNNS 533

Query: 266 C 266
            
Sbjct: 534 T 534


>gi|264677429|ref|YP_003277335.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262207941|gb|ACY32039.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 514

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 15/212 (7%)

Query: 63  YILVENLSLVIISITISLLLGYIS-----GSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           Y +    +L+I S+  +L + +I      G  LK    + + ++ L+R D L+GL N   
Sbjct: 299 YAVWRQRALLIASVMGTLTMAFIGLSFAFGVQLKRRMRAESELALLARTDGLTGLNNRRK 358

Query: 118 F-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
                          +   S++F DID+FK  ND +GH  GD V+A ++  +      P 
Sbjct: 359 LDEIIEHEWHRAKRSHSAFSLLFVDIDWFKAYNDTYGHQAGDMVLATVARCIASNIRRPE 418

Query: 171 -FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               R GGEEF      ++    A++A ++R+ +    I  +      IT+S G A    
Sbjct: 419 DSAARYGGEEFIVVLPDTTLDGGALIAENIREAVSELAIAHTGSEFGCITVSIGCAAWVP 478

Query: 230 KE--PISTIIYRADQALYVAKKSGRNRVVCFS 259
            +   +  ++  AD+ALY AK +GRN+VV  S
Sbjct: 479 GKDLDVQEVLRSADKALYGAKMTGRNKVVLSS 510


>gi|262164439|ref|ZP_06032177.1| hypothetical protein VMA_000881 [Vibrio mimicus VM223]
 gi|262026819|gb|EEY45486.1| hypothetical protein VMA_000881 [Vibrio mimicus VM223]
          Length = 314

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 19/174 (10%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +++  D LS L N   F   L         +N+ L++   DID FK+ ND+FGH  GD
Sbjct: 135 LDKMAHTDSLSNLANRLTFDEQLDVEFRRSRRHNDPLTVALIDIDEFKKFNDHFGHIAGD 194

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           + I  ++  L  +   P     R GGEEFA     + E+ A  + N+L K +E  Q+ I+
Sbjct: 195 ECIRKIAHALRSITKRPADLAARYGGEEFALILPSTEEEGAKSMVNELIKAVE--QLEIA 252

Query: 212 SGPSIH---ITISAG----IAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256
             P      +T+S G      E+   E +    +   AD ALY +K +GRN+  
Sbjct: 253 HSPEAMNQCVTVSVGYTVLYPEQVDFEQMKAVDVAQTADNALYTSKHNGRNQAT 306


>gi|262171783|ref|ZP_06039461.1| GGDEF family protein [Vibrio mimicus MB-451]
 gi|261892859|gb|EEY38845.1| GGDEF family protein [Vibrio mimicus MB-451]
          Length = 439

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 83/174 (47%), Gaps = 38/174 (21%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+G +N       L            + S++F DIDYFKQ+ND +GH +GD +
Sbjct: 272 EMAHRDALTGAINRHGIRDWLQEQARLVRWQLSQFSVLFIDIDYFKQVNDVYGHGLGDDL 331

Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +             SD+LV          R GGEEF      +  ++A  LA  LR  +E
Sbjct: 332 LREFALVINREIRESDRLV----------RWGGEEFVVFCAQTGIEQAVELAERLRLRVE 381

Query: 205 NSQINISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           N          IH   +T S GI++    E I+  + RAD+ALY AK+ GRNR+
Sbjct: 382 NHSW-------IHGDELTCSIGISQ-MEDERITETVSRADEALYRAKRLGRNRI 427


>gi|254500077|ref|ZP_05112229.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222441375|gb|EEE48053.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 809

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 10/163 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +I   +R D L+GLLN   F   +         + +++++FFD+D FK +NDN GH  GD
Sbjct: 356 KILHQARTDFLTGLLNRHGFTHRMNEAIDAADADHEIAVLFFDLDNFKWVNDNLGHFAGD 415

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINIS 211
           +V+  ++ ++  +  T    GR GG+EFA    G   +  A+ LA  + ++++   I++ 
Sbjct: 416 QVLKLVTQRVSKLLKTDDCFGRFGGDEFAILLSGGDVRARAVDLATRINQVLKQP-ISL- 473

Query: 212 SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           SG  + I+ S GI+    + +    ++  +D A+Y  K SGRN
Sbjct: 474 SGRQLQISASIGISYYPENADTADDLLQTSDVAMYRQKGSGRN 516


>gi|120601326|ref|YP_965726.1| diguanylate cyclase [Desulfovibrio vulgaris DP4]
 gi|120561555|gb|ABM27299.1| diguanylate cyclase [Desulfovibrio vulgaris DP4]
          Length = 630

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 11/166 (6%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q + ID L+GL N + F       +  L   +  LS++ FD D+FK  ND +GH  GD  
Sbjct: 307 QRAGIDPLTGLCNRARFDEVLLAELQRLQRQDSPLSLMMFDADHFKPYNDMYGHVAGDAC 366

Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  ++  L  V       V R GGEEF     G+    A  LA  +R+ +    I     
Sbjct: 367 LKRVAGVLRAVAHRASDVVARYGGEEFVCILPGTDRDSAYALAEKVRQGVRALAIPHVGS 426

Query: 214 PSIHI-TISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           P   + T+SAG+     C       ++ + D+ALY AK +GR+RV+
Sbjct: 427 PVAGVLTVSAGVVTVHGCDGLDPQEVVAQVDRALYQAKGAGRDRVM 472


>gi|167645462|ref|YP_001683125.1| response regulator PleD [Caulobacter sp. K31]
 gi|167347892|gb|ABZ70627.1| response regulator receiver modulated diguanylate cyclase
           [Caulobacter sp. K31]
          Length = 454

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 92/190 (48%), Gaps = 14/190 (7%)

Query: 81  LLGYISGSILKELFISYNRIS-----QLSRIDCLSGLLNHSAFISSLGSY-------NEK 128
           L   +   I ++ +  Y R +     +L+  D L+GL N       L S         + 
Sbjct: 261 LSARVKTQIQRKRYTDYLRQNLDQSLELAVTDQLTGLHNRRYMAGQLDSLVKRAALGGDP 320

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           ++ +  DID+FK+IND FGH VGD+V+   + +L           R GGEEF      + 
Sbjct: 321 VAALLIDIDHFKKINDGFGHDVGDEVLREFALRLASNVRAIDLPCRYGGEEFTVIMPDTQ 380

Query: 189 EQEAAILANDLRKIIENSQINISSGPS-IHITISAGI-AERCHKEPISTIIYRADQALYV 246
             +A  +A  +R  +  S   ++ G   + +TIS G+ A     +   T++ RAD+A+Y 
Sbjct: 381 LADALRIAERIRMHVSGSPFRVAQGSELLTVTISIGVSATSGPGDTPETLLKRADEAVYE 440

Query: 247 AKKSGRNRVV 256
           AKKSGRN VV
Sbjct: 441 AKKSGRNAVV 450


>gi|111222659|ref|YP_713453.1| sensor histidine kinase [Frankia alni ACN14a]
 gi|111150191|emb|CAJ61886.1| putative sensor histidine kinase with multiple PAS and a response
           regulator receiver domain [Frankia alni ACN14a]
          Length = 578

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 13/164 (7%)

Query: 107 DCLSGLLNHSAFISSLGS---------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           D L+GL N  +F+  LG          + +++ ++F D+D FK +ND+ GH  GD V+  
Sbjct: 385 DGLTGLPNRVSFLDRLGRALARAEADRWQDRVGLLFVDLDGFKAVNDSAGHQAGDWVLRE 444

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSI 216
           ++ +L         V RL G+EFA    G +  EA     D  +I+E + +     GP +
Sbjct: 445 VAARLRRAVRPGDTVARLAGDEFAVLCAGITSVEAVTGIAD--RIVETAAVRAPGGGPRV 502

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             ++   ++     +P   I++ AD A+Y AK+ GR+R V F +
Sbjct: 503 TSSVGVAVSGPGLTDP-REILHAADIAMYAAKRQGRHRRVLFDE 545


>gi|89054522|ref|YP_509973.1| diguanylate cyclase/phosphodiesterase [Jannaschia sp. CCS1]
 gi|88864071|gb|ABD54948.1| diguanylate cyclase/phosphodiesterase [Jannaschia sp. CCS1]
          Length = 569

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 6/158 (3%)

Query: 107 DCLSGLLNHS---AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL N     A   ++   +     +F D+D+FKQ+ND  GH +GDK++  ++D+L 
Sbjct: 138 DELTGLGNRKYLKACFEAIAQEDSGAIALFLDLDHFKQVNDTLGHAIGDKLLCKVADRLR 197

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   V R+GG+EFA   +   +  A  +A  + K+I   +  +  G  + I +S G
Sbjct: 198 KSVREGDIVVRIGGDEFAILLINWDQSAAEDVAARIIKVI--GRPFLIEGHQVTIGVSIG 255

Query: 224 IAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSD 260
           +A R   E  S  ++ RAD ALY +K+ GRNR   F D
Sbjct: 256 MAVRLPNERESEKLLQRADVALYESKRLGRNRFHWFKD 293


>gi|229194941|ref|ZP_04321722.1| Sensory box/GGDEF [Bacillus cereus m1293]
 gi|228588509|gb|EEK46546.1| Sensory box/GGDEF [Bacillus cereus m1293]
          Length = 569

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 88/174 (50%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++        +  +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKREFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQAP- 253

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             I  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 254 -FILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306


>gi|254502820|ref|ZP_05114971.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
 gi|222438891|gb|EEE45570.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
          Length = 498

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 87/165 (52%), Gaps = 11/165 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDK 153
           ++  +  D L+ L N  +F  +L + + K       ++V FD+D FK IND  GH  GD+
Sbjct: 321 LAHQANTDALTNLGNRWSFEQTLDALSAKADGTKEFALVCFDLDRFKTINDTLGHETGDE 380

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+ ++ + L  +      V RLGG+EF     G +++E  +LA     I   SQ    +G
Sbjct: 381 VLKYVGETLSSLTYPQDKVFRLGGDEF-VIVYGLTDRE-RVLAVAKEAIAILSQRVTLNG 438

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            S H   SAGIA     EP++ ++ RAD ALY +KK GR +V  +
Sbjct: 439 HSCHFGASAGIA--YSTEPVN-LLRRADTALYASKKKGRGQVTVY 480


>gi|294636778|ref|ZP_06715116.1| GGDEF protein [Edwardsiella tarda ATCC 23685]
 gi|291089993|gb|EFE22554.1| GGDEF protein [Edwardsiella tarda ATCC 23685]
          Length = 351

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 67/138 (48%)

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           I +L        I   DID FKQIND++GH  GD+V+  L+           ++ R GGE
Sbjct: 212 ILTLEREQRPCCIAMIDIDNFKQINDHYGHLCGDQVLITLAKMANQTLSPQDYIARFGGE 271

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EF          +A      LR++I ++ + +  G    +T S G+        +   I 
Sbjct: 272 EFIILFAELELSQANARCEHLRRLISHAPLYLGHGQRAWVTASFGLTRFDGYSDLEHAIA 331

Query: 239 RADQALYVAKKSGRNRVV 256
           +AD+ALY AK+ G+NR++
Sbjct: 332 QADEALYRAKRQGKNRII 349


>gi|264678991|ref|YP_003278898.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           CNB-2]
 gi|262209504|gb|ACY33602.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           CNB-2]
          Length = 458

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 78/161 (48%), Gaps = 21/161 (13%)

Query: 107 DCLSGLLNHSAFISSLGSYN--------EKLSI----VFFDIDYFKQINDNFGHPVGDKV 154
           D L+GL N SA     GSY         E+  +    +  D+D FKQ+ND FGH  GD+V
Sbjct: 275 DDLTGLPNRSA-----GSYELENCQRIAERQGVPYALIMCDVDLFKQVNDQFGHEAGDQV 329

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  L     +   V R GGEEF     G   Q A  LA  LR+ I +     S   
Sbjct: 330 LQQIAKVLRNTVRSSEHVARWGGEEFLIIVPGVGLQAALELAERLRRSIASH----SYAA 385

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  IT+S G+      E  + ++ R D ALY AK SGRN+V
Sbjct: 386 AGTITMSFGVGSWQAGEASAQLLRRTDMALYRAKSSGRNQV 426


>gi|220908650|ref|YP_002483961.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Cyanothece sp. PCC 7425]
 gi|219865261|gb|ACL45600.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7425]
          Length = 1094

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 60/189 (31%), Positives = 91/189 (48%), Gaps = 16/189 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDID 137
           IS     EL I Y         D L+GL N + F   L         Y   L++ F D+D
Sbjct: 637 ISARKQAELTIHYQAFH-----DLLTGLPNRALFDDRLNQALADARRYQHLLAVFFLDLD 691

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK IND  GH +GD+++  ++ +L+        + R GG+EF    L    Q  A    
Sbjct: 692 RFKVINDTLGHAIGDQLLQQVAQRLLPCLREIDTIARWGGDEF--TLLLPHVQTPADSVK 749

Query: 198 DLRKIIENSQINIS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
              +++ + +   S  G ++HIT S GIA   H  E  +T++  AD ALY AK+ GRN +
Sbjct: 750 IAERLLASLKPPFSLKGHNLHITASLGIALYPHDGEDGTTLLRNADAALYRAKEEGRNGL 809

Query: 256 VCFSDIENN 264
            C++ + N+
Sbjct: 810 YCYTPMLNS 818


>gi|300312320|ref|YP_003776412.1| response regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300075105|gb|ADJ64504.1| response regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 341

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 91/177 (51%), Gaps = 11/177 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L  S   + +L+  D L+G+ N   F   LG+   +       L+++  D+D+FK  N
Sbjct: 161 QQLQKSNFELQRLTNTDGLTGIANRRYFDDYLGAEWRRARRDGLDLALLLIDVDFFKLYN 220

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DN+GH  GD V+  +++ L      P     R GGEEFA     +    A  +A  +  +
Sbjct: 221 DNYGHVAGDAVLRQVAEALDSSIQRPADLSARFGGEEFAMILPRTGLDGAHAIAQKVCHL 280

Query: 203 IENSQI-NISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256
           +E+ Q+ +  S  S  +T+S G A    +E   +  +I  AD+ LY+AK+ GRNRVV
Sbjct: 281 VESLQVPHEGSSVSAWLTVSVGAATLVPQEQQELRELIEAADRRLYLAKQQGRNRVV 337


>gi|269964051|ref|ZP_06178356.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831192|gb|EEZ85346.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 655

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 15/164 (9%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHPVGDKVI 155
           SR+D L+G LN S  I  +   N+ +S        +   D+D FK +ND  GHP GD V+
Sbjct: 477 SRLDRLTGSLNRSTIIEKIR--NQTVSAPEDMRYVLALIDLDNFKLLNDKHGHPTGDLVL 534

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +   + V      ++GRLGGEEF        E +       L K I   QI  ++  +
Sbjct: 535 KHVCKAIQVKLNKGEYLGRLGGEEFILLLKNVDEIDVPFRIQSLHKTISEKQIKSTNDET 594

Query: 216 IHITISAGIAERCHKEPISTI--IYR-ADQALYVAKKSGRNRVV 256
           +++T  A +A     +P+S    +Y   DQALY +KK+G N V+
Sbjct: 595 LNVT--ASLAYLSTSKPLSNFDELYSILDQALYQSKKNGHNAVI 636


>gi|146306844|ref|YP_001187309.1| diguanylate cyclase [Pseudomonas mendocina ymp]
 gi|145575045|gb|ABP84577.1| diguanylate cyclase [Pseudomonas mendocina ymp]
          Length = 386

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 105/222 (47%), Gaps = 12/222 (5%)

Query: 48  IFLFYIGLTPFYGLEYI-LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
           + L YIG     GL    L+ N+  ++    I  +  Y+     +E F+    +  L+  
Sbjct: 165 VLLAYIGAEWLAGLPLPRLINNVLFLLFGNLIGAVGCYLLEYKSREYFLISRLMRLLADR 224

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N  +F               + L+++  DID+FK  ND++GH  GD  +  + 
Sbjct: 225 DSLTGLHNRRSFNRQFERLWRQAQRDGQSLALLLCDIDHFKAYNDHYGHQAGDTALQRVG 284

Query: 160 DQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217
             +      P+ +G RLGGEEFA         EA   A  LR+ +E + I + SS  +  
Sbjct: 285 ALIEQAARRPLDMGVRLGGEEFALLLFDIGPDEARQRAEALRQALEAAGIPHQSSDSAAV 344

Query: 218 ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +T+S G+A      +  +S I  +AD+ALY AK  GRN+V  
Sbjct: 345 LTMSIGVACLSPGTEGELSQIYEQADRALYEAKAFGRNQVAA 386


>gi|90418502|ref|ZP_01226414.1| putative response regulator component of a two-component regulatory
           system [Aurantimonas manganoxydans SI85-9A1]
 gi|90338174|gb|EAS51825.1| putative response regulator component of a two-component regulatory
           system [Aurantimonas manganoxydans SI85-9A1]
          Length = 409

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 83/165 (50%), Gaps = 10/165 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           + Q+   D L+GLLNH+ F   +    E+       L++   DID+FKQ+ND  GH  GD
Sbjct: 245 LRQIMERDSLTGLLNHARFKERVTLELERSRRTGAPLTVALIDIDHFKQVNDTHGHQTGD 304

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NIS 211
           +VI  LS  LV        V R GGEEF    L +    A  + + +R  +  SQI +  
Sbjct: 305 RVIQALSQCLVGGLRRTDVVARYGGEEFGLLLLDTPVAAAQTVLDRIR--VRFSQIGHAG 362

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              S   T S G+A        + +I  AD ALY AK++GRNR+V
Sbjct: 363 DDASFRATFSGGVAGTAKGIDSTAMIAAADAALYGAKRAGRNRIV 407


>gi|46581509|ref|YP_012317.1| GGDEF domain-containing protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450931|gb|AAS97577.1| GGDEF domain protein [Desulfovibrio vulgaris str. Hildenborough]
          Length = 655

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 11/166 (6%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q + ID L+GL N + F       +  L   +  LS++ FD D+FK  ND +GH  GD  
Sbjct: 332 QRAGIDPLTGLCNRARFDEVLLAELQRLQRQDSPLSLMMFDADHFKPYNDMYGHVAGDAC 391

Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  ++  L  V       V R GGEEF     G+    A  LA  +R+ +    I     
Sbjct: 392 LKRVAGVLRAVAHRASDVVARYGGEEFVCILPGTDRDSAYALAEKVRQGVRALAIPHVGS 451

Query: 214 PSIHI-TISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           P   + T+SAG+     C       ++ + D+ALY AK +GR+RV+
Sbjct: 452 PVAGVLTVSAGVVTVHGCDGLDPQEVVAQVDRALYQAKGAGRDRVM 497


>gi|332532610|ref|ZP_08408487.1| putative GGDEF domain membrane protein [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038031|gb|EGI74479.1| putative GGDEF domain membrane protein [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 345

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 74/125 (59%), Gaps = 2/125 (1%)

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQ+ND +GH VGD+V+  ++  L V+     +V R+GGEEFA  +   +++ A   A  +
Sbjct: 217 KQVNDEYGHGVGDQVLIEVATLLRVILARG-YVFRVGGEEFALFSSFENDEAALKTAEQI 275

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           R   E++  +I  G +I++T S G+A+      + + + +AD+ LY AK+ GRN+V C  
Sbjct: 276 RARFESTTFDI-DGLAINVTTSIGVAKFKSTNSLESFVNQADKQLYKAKQFGRNKVYCKF 334

Query: 260 DIENN 264
             EN+
Sbjct: 335 KKEND 339


>gi|313683571|ref|YP_004061309.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
 gi|313156431|gb|ADR35109.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
          Length = 974

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 10/167 (5%)

Query: 103 LSRIDCLSGLLN----HSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N    H+   +S+   N    +L+++ FD+D FK IND++GH  GD+++
Sbjct: 550 LANFDPLTGLANRGLLHAHLQNSIDKANRDKTQLALLMFDLDRFKDINDSYGHSAGDELL 609

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGP 214
             +S++          + RLGG+EFA      +  ++A  LA ++   +  +   +S+G 
Sbjct: 610 QMVSERFTSRLREGDLIARLGGDEFAVVLENITRPEDAGRLAQEMLGTLAEA-YRLSAGA 668

Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            IH+  SAGI     H    + ++  AD ALY AK  GR     ++D
Sbjct: 669 LIHVGASAGIVLFPDHGSDAAILLQHADAALYKAKAEGRGVYHYYTD 715


>gi|266619981|ref|ZP_06112916.1| putative response regulator/sensory box/GGDEF domain/EAL domain
           protein [Clostridium hathewayi DSM 13479]
 gi|288868445|gb|EFD00744.1| putative response regulator/sensory box/GGDEF domain/EAL domain
           protein [Clostridium hathewayi DSM 13479]
          Length = 611

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 8/165 (4%)

Query: 102 QLSRIDCLSGLLNHSA----FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           Q + ID L+G+ N  A      + L   N   +++  D+D FKQ+ND  GHP GD+V+  
Sbjct: 442 QEAMIDPLTGVKNRLAVEKILSALLHKENRSGALIMLDLDRFKQVNDTLGHPEGDRVLQK 501

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-NSQINISSGPSI 216
            +  L+ +FG+  FV RLGG+EF   +   +  E A  A   R++I+  +Q         
Sbjct: 502 FAHCLIEIFGSNSFVARLGGDEFIVFSNEIALPEDA--ARKARQLIDIMAQRLEMEEKKC 559

Query: 217 HITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            + +S GIA      + ++ +I  ADQALY AK +G  R + +S+
Sbjct: 560 GLAVSIGIAFYPSDADSLTELIKLADQALYHAKHNGGKRYMLYSE 604


>gi|188582142|ref|YP_001925587.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium populi BJ001]
 gi|179345640|gb|ACB81052.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium populi BJ001]
          Length = 950

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 87/174 (50%), Gaps = 15/174 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPV 150
           RI  ++R D L+GL N   F   L     +L        + +  D+D FK++ND  GHPV
Sbjct: 518 RIITMARRDALTGLANRMVFGERLEEAAARLEDGSGAGFATLCLDLDRFKEVNDTLGHPV 577

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQIN 209
           GD ++  ++++L         V RLGG+EFA    G+ + Q+A+ LA   R I    Q  
Sbjct: 578 GDGLLRSVAERLQSCLRETDLVARLGGDEFAIVQAGTHARQDASALAK--RLIAAFQQPF 635

Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +  G ++ + +S GI+    H      ++  AD ALY AK +GR    C+S  E
Sbjct: 636 LLDGHTVTVGLSIGISLAPEHGTSPEKLLKSADLALYRAKATGRG---CWSFFE 686


>gi|119898694|ref|YP_933907.1| two-component response regulator [Azoarcus sp. BH72]
 gi|119671107|emb|CAL95020.1| probable two-component response regulator [Azoarcus sp. BH72]
          Length = 301

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 85/177 (48%), Gaps = 17/177 (9%)

Query: 94  FISYNRI-SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           F+   +I   L+  DCL+ + N   F   L       G  +  +S+   D+DYFKQ ND+
Sbjct: 125 FVRQRKILETLAGRDCLTEIDNRRRFEEVLEREWRRAGRGSGPMSVAIIDVDYFKQYNDH 184

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +GH  GD+ +  ++  L    G P     FV R GGEEF     G+    A  LA  +R 
Sbjct: 185 YGHARGDQALKAVAKAL---SGGPNRASDFVARYGGEEFVMLFPGTPADGARELAESVRH 241

Query: 202 IIENSQI-NISSGPSIHITIS-AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            + +  I +  S  + H+T+S  G     ++ P   +I  AD  LY AK  GRNRV+
Sbjct: 242 AVASLAIPHAHSAVAPHLTVSIGGATSDDYQSPGHALIEAADTMLYRAKAEGRNRVL 298


>gi|296162931|ref|ZP_06845710.1| diguanylate cyclase [Burkholderia sp. Ch1-1]
 gi|295886842|gb|EFG66681.1| diguanylate cyclase [Burkholderia sp. Ch1-1]
          Length = 406

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 23/183 (12%)

Query: 93  LFISYNRISQL----SRIDCLSGLLNHS---------AFISSLGSYNEKL----SIVFFD 135
           L ++  R  QL    ++ D L+G LN           A    +  +++ +    S++  D
Sbjct: 209 LLMAAERSHQLLFDHAQRDPLTGALNRGGLRLSYERVAAARGMARHDDTMLGLVSLIVID 268

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D+FK IND  GH +GD V+   +        T   + R GG+EF A    +   EA  L
Sbjct: 269 LDHFKAINDTHGHTMGDDVLRLFATTARDDLRTGDTLARYGGDEFVAMLPHTGGDEALAL 328

Query: 196 ANDLRKIIENSQ---INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           A  +R    N+    + ++  P++ + I+ G       + + TI+ RAD+ALY +K+ GR
Sbjct: 329 AERIRVAFANATGALVALAVQPTLSVGIATG---SLADDTLDTILQRADEALYRSKREGR 385

Query: 253 NRV 255
           NRV
Sbjct: 386 NRV 388


>gi|269962219|ref|ZP_06176572.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833050|gb|EEZ87156.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 376

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 85/185 (45%), Gaps = 21/185 (11%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           KEL     ++ +L+  D LSGL N   F       +S   +  + +S +  D+DYFKQ+N
Sbjct: 193 KELRCLNKKLQELAITDELSGLYNRRYFNIMTPDILSKAQAGKQTVSFISIDLDYFKQLN 252

Query: 144 DNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           D  GH  GD    KV A LS Q     G      R+GGEEF    + S  +     A  L
Sbjct: 253 DELGHLKGDEAITKVGALLSSQFN---GIDEIAFRMGGEEFLIVLVDSEHEHCVERAESL 309

Query: 200 RKIIENSQINISSGPSIH-ITISAGI----AERCHKEPISTIIYRADQALYVAKKSGRNR 254
           R+ I    I   +    H +T S G+    AE C    I   + + DQ LY AK SGRN 
Sbjct: 310 RESISKLSILCENNAHTHLLTSSIGVFSQRAESC--SDIRYFLDKVDQCLYKAKLSGRNT 367

Query: 255 VVCFS 259
           V+  S
Sbjct: 368 VIAES 372


>gi|240139816|ref|YP_002964293.1| putative diguanylate cyclase (GGDEF motif) [Methylobacterium
           extorquens AM1]
 gi|240009790|gb|ACS41016.1| putative diguanylate cyclase (GGDEF motif) [Methylobacterium
           extorquens AM1]
          Length = 352

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 18/164 (10%)

Query: 106 IDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            D L+GL N   F          +        S++  DID+FK +ND  GH  GD+V+  
Sbjct: 184 TDALTGLANRKTFDGFLRDSIARTRSDSGSTFSLLMLDIDHFKGLNDRHGHRFGDQVLRL 243

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFA----AAALGSSEQEAAILANDLR--KIIENSQINIS 211
           +   L           R GGEEFA     A +G+    A  +   LR  ++++    ++ 
Sbjct: 244 VGRLLSAKTTDRDLAARYGGEEFAIVLGEAGIGAGVALAQEICGRLRGQRLVKRGTGDVV 303

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +     +TISAG+A+    E    ++ RAD+ALY AK++GR+RV
Sbjct: 304 A----QVTISAGVAQYRPGEAARDVVERADRALYEAKRTGRDRV 343


>gi|257059586|ref|YP_003137474.1| diguanylate cyclase [Cyanothece sp. PCC 8802]
 gi|256589752|gb|ACV00639.1| diguanylate cyclase [Cyanothece sp. PCC 8802]
          Length = 462

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 92/180 (51%), Gaps = 11/180 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL  + +++  L+ ID L+ + N   F          L    + LS++  D+DYFK  N
Sbjct: 277 QELQKANDKLEYLAIIDGLTQVHNRRYFNQYLVQEWRRLMRERQSLSLILCDVDYFKLFN 336

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D++ H  GD  +  ++  +  V   P   V R GGEEFA     ++E  AA +A  +R  
Sbjct: 337 DHYLHQAGDDCLQKIAQVMQDVVKRPADLVARFGGEEFAIILSNTNELGAARVAQKIRLG 396

Query: 203 IENSQI-NISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFS 259
           +E  +I +  S  S ++T+S GIA       IS+  +I  AD+ALY AK  GRNR   ++
Sbjct: 397 VEQLKIPHALSQCSEYVTLSLGIATTIPTPDISSERLILAADKALYQAKNMGRNRYCLYA 456


>gi|158335003|ref|YP_001516175.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158305244|gb|ABW26861.1| diguanylate cyclase (GGDEF domain) [Acaryochloris marina MBIC11017]
          Length = 630

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 11/164 (6%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           SRID L+ + N  +F  SL           + LSI+  D+D+FKQ ND +GH  GD  + 
Sbjct: 466 SRIDGLTSIHNRRSFDESLDKEWRRLRREQQPLSIILCDVDHFKQYNDTYGHQAGDTCLQ 525

Query: 157 FLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGP 214
            ++  +      P   V R GGEEF      +    A  +A  +R  IE  +I + +S  
Sbjct: 526 EVALAIDKSVKRPADMVARYGGEEFVVLLPNTPLPGATHIAEMIRTAIEVLRIPHKTSSA 585

Query: 215 SIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S  +T+S G+A      ++  + ++  AD ALY AK+ GRNRV+
Sbjct: 586 SDQVTLSLGVATVIPNTQQTYTELLEAADAALYRAKQQGRNRVI 629


>gi|119776418|ref|YP_929158.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B]
 gi|119768918|gb|ABM01489.1| diguanylate cyclase [Shewanella amazonensis SB2B]
          Length = 595

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 1/167 (0%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF-DIDYFKQINDNFGHP 149
           +EL  +   +++ +  D L+GL N   F   L    E+  I+   D+D+FK  ND +GH 
Sbjct: 414 QELMRANMHLAREAVTDPLTGLTNRRPFTERLSMQLEQGGILLMADVDFFKGYNDTYGHV 473

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  L+ +L  +      + R+GGEEFA  A   SE E   L + L   + N  I 
Sbjct: 474 AGDDVLKKLAMELQALLSDSALLARIGGEEFALIAPVMSEAELEALCDRLLTHVRNLAIE 533

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                   +T+S G     +   +   + +AD +LY+AK+ GRN  V
Sbjct: 534 HRGSHFGIVTLSLGAINLENSSNVRDALSQADASLYLAKQQGRNLAV 580


>gi|307721317|ref|YP_003892457.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
 gi|306979410|gb|ADN09445.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
          Length = 307

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 7/176 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYF 139
           +  ++ +L      +   S +D L+ + N  A  + L +  +K      L ++  DID F
Sbjct: 125 ANQVIAQLSAQVKELESSSNLDALTKIFNRRALDTYLKNLCDKKELKHELHVLLLDIDDF 184

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND +GH  GDK++ F+++ L         V R GGEEF              +A+ +
Sbjct: 185 KKINDKYGHIAGDKILIFVANMLRKALRDGDKVFRYGGEEFLIVLNRIDVNTCQEIADRI 244

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            K++ ++Q+    G  I++TIS G      ++    +I RAD+ALY +KKSG+N++
Sbjct: 245 LKLVSSNQL-FYKGEPINVTISIGSTLFYPEDTPEALINRADKALYKSKKSGKNQI 299


>gi|238920210|ref|YP_002933725.1| hypothetical protein NT01EI_2319 [Edwardsiella ictaluri 93-146]
 gi|238869779|gb|ACR69490.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 351

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 3/156 (1%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           QL++ +   GL      I  L        I   DID FKQIND +GH  GD+V+  ++  
Sbjct: 198 QLTQTNNRQGLQQQ---ILRLEHSRSACCIAMIDIDNFKQINDRYGHLCGDRVLTAIAAI 254

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                    ++ R GGEEF     G + + A      +R+ I  + + +     I  + S
Sbjct: 255 ASQTLQPRDYMARFGGEEFVILFPGKTLERANARCEQIRQAICATPLYLCHDQQIRASAS 314

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            G++    ++ +   I RAD ALY AK+ G+NRV C
Sbjct: 315 FGLSYFDGRDSLQQAIARADGALYRAKRRGKNRVEC 350


>gi|227112381|ref|ZP_03826037.1| hypothetical protein PcarbP_05422 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 610

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 74/157 (47%), Gaps = 11/157 (7%)

Query: 107 DCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           D L+GL N S+F     ++          EK  +   DID FK IND +GH  GD V+  
Sbjct: 452 DFLTGLPNRSSFFEQANTFFQHKQQSHQAEKSCLAIIDIDLFKNINDQYGHLAGDAVLKE 511

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           L+  + +       V R+GGEEF       S Q A +    +R+ IE   +      ++ 
Sbjct: 512 LAMLMRMSLRQEDLVARIGGEEFIILLKDVSYQTAVVTIERIRQAIEQHTLEYDR-QNLR 570

Query: 218 ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
            TISAGIA  R     +   I  AD+ LY AK+ GRN
Sbjct: 571 FTISAGIAAYRTDLASVEDWIQLADENLYAAKRQGRN 607


>gi|206603322|gb|EDZ39802.1| Diguanylate cyclase [Leptospirillum sp. Group II '5-way CG']
          Length = 368

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 84/164 (51%), Gaps = 17/164 (10%)

Query: 106 IDCLSGLLNHSAFISSLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGD---KVIAFLSD 160
           +D L+G LN   F   +GS +  L IV   FD+D+FKQ+ND  GH  GD   K IA L +
Sbjct: 203 LDPLTGTLNRRGFQKRIGS-SVGLDIVLLIFDLDHFKQLNDRQGHHQGDLVLKRIAGLVN 261

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-------G 213
            L+   G+     R GG+EF       + +E   +A ++R  IE   + +SS       G
Sbjct: 262 GLLA--GSNAVFSRWGGDEFLVLFSRKNLEEIVAVAEEIRTRIEKEGLGVSSETEPSDQG 319

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +I I +SAG  +   +E        ADQALY+AKK GRNR   
Sbjct: 320 MTISIGLSAGHLD--SEEHFDRFYNLADQALYLAKKEGRNRTRA 361


>gi|167590007|ref|ZP_02382395.1| diguanylate cyclase [Burkholderia ubonensis Bu]
          Length = 518

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 94/209 (44%), Gaps = 17/209 (8%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ-----LSRIDCLSGLLNHSA 117
           Y    + ++ I S  + L LG++  S+L ++ +     ++     L+R D L+GL N   
Sbjct: 298 YAAWYDRAIPIGSAMVLLALGFVGLSLLLDVQLRRRHRAEAELRALARTDGLTGLDNRRM 357

Query: 118 FISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
              +L             LS++F D+DYFK+ ND  GH  GD  +A +   L      P 
Sbjct: 358 LDLTLEREWRRAARSQHALSLLFVDVDYFKRYNDTQGHQAGDDALAAVGRCLAGCLRRPA 417

Query: 171 -FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
            +  R GGEEF     G     AA +A  +R  I    I   +     +T S G+   C 
Sbjct: 418 DYAARYGGEEFVVILPGVDASGAAAVAETIRASIHELGIRHDASEFGRLTASIGVTT-CF 476

Query: 230 KE---PISTIIYRADQALYVAKKSGRNRV 255
            E    +   + RAD AL+ AK+ GRN+V
Sbjct: 477 PEWDGSVHAALKRADDALFRAKERGRNQV 505


>gi|170736935|ref|YP_001778195.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3]
 gi|169819123|gb|ACA93705.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3]
          Length = 521

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 95/207 (45%), Gaps = 19/207 (9%)

Query: 68  NLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           + ++ I S  + L +G++  S+L     ++   +   +  L+R D L+GL N      +L
Sbjct: 303 DRAIPIGSAMVLLAIGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRMLDVTL 362

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGR 174
                +       LS++F D+DYFK  ND  GH  GD  +A +   +      P  +  R
Sbjct: 363 AREWRRAARSQHALSLLFIDVDYFKHYNDTQGHQAGDDALAAVGHCIAGCLRRPADYAAR 422

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA----ERCHK 230
            GGEEF           A  +A  +R  I +  I   +G    +T+S G+     ER   
Sbjct: 423 YGGEEFVVVLPDIDTDGAVTIAETIRTGILDLGIRHDAGTVGRLTVSIGVTTSYPER--D 480

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVC 257
           + I   +  AD+ALY AK+ GRNR+V 
Sbjct: 481 DNIQAALKLADEALYRAKEGGRNRIVV 507


>gi|146307752|ref|YP_001188217.1| diguanylate cyclase [Pseudomonas mendocina ymp]
 gi|145575953|gb|ABP85485.1| periplasmic/7TM domain sensor diguanylate cyclase [Pseudomonas
           mendocina ymp]
          Length = 638

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 10/169 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+++L+R D L+GL N       L           + ++I+  D+D+FKQ+ND +GH  G
Sbjct: 463 RLAELNRRDGLTGLFNRQTLSEELTRACARAERGKQSVAILMLDLDHFKQVNDRYGHLAG 522

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D  +   + ++     +   + R GGEEF A    +S   A  LA  LR  +        
Sbjct: 523 DACLRHAAQRIQQRLRSSDLLARFGGEEFVALLDNTSLDGALDLAEQLRDDLARHPCPYQ 582

Query: 212 SGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCF 258
              SI +++S G+      +P      +  AD+ALY AK  GRN+VV +
Sbjct: 583 QH-SIPLSLSIGLHAGVPHDPSCGEHWLDLADRALYRAKAGGRNQVVSY 630


>gi|56413372|ref|YP_150447.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197362295|ref|YP_002141932.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56127629|gb|AAV77135.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093772|emb|CAR59246.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 660

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 98/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 216 AGTDITEERRTQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+SGR +  
Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKESGRGQFC 390

Query: 257 CFS 259
            FS
Sbjct: 391 VFS 393


>gi|107027525|ref|YP_625036.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
 gi|116693763|ref|YP_839296.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
 gi|105896899|gb|ABF80063.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
 gi|116651763|gb|ABK12403.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
          Length = 521

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 95/207 (45%), Gaps = 19/207 (9%)

Query: 68  NLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           + ++ I S  + L +G++  S+L     ++   +   +  L+R D L+GL N      +L
Sbjct: 303 DRAIPIGSAMVLLAIGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRMLDVTL 362

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGR 174
                +       LS++F D+DYFK  ND  GH  GD  +A +   +      P  +  R
Sbjct: 363 AREWRRAARSQHALSLLFIDVDYFKHYNDTQGHQAGDDALAAVGHCIAGCLRRPADYAAR 422

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA----ERCHK 230
            GGEEF           A  +A  +R  I +  I   +G    +T+S G+     ER   
Sbjct: 423 YGGEEFVVVLPDIDTDGAVTIAETIRTGILDLGIRHDAGTVGRLTVSIGVTTSYPER--D 480

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVC 257
           + I   +  AD+ALY AK+ GRNR+V 
Sbjct: 481 DNIQAALKLADEALYRAKEGGRNRIVV 507


>gi|188577960|ref|YP_001914889.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188522412|gb|ACD60357.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 494

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 100/200 (50%), Gaps = 16/200 (8%)

Query: 71  LVIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
           +V+ ++  +LLLG   ++    L+ +  +  ++S  + +D L+G+ N  AF   L     
Sbjct: 294 IVVAALGCALLLGVGIWLDLQ-LRRMHRNEAQLSTEAWVDALTGIANRRAFDDRLSRALQ 352

Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEE 179
                   LS++  D+D+FK  ND +GH  GD  +  ++  +         V  R GGEE
Sbjct: 353 DAIRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRVIAGTIAACSRRSEDVAARYGGEE 412

Query: 180 FAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIAE-RCHKEPIS--T 235
           F      +    A  LA+ +R  + E   +++SS  S H+T+S G+A     + P+S   
Sbjct: 413 FGMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGVATFEPGEAPLSPNA 472

Query: 236 IIYRADQALYVAKKSGRNRV 255
           I++ AD ALY AK+ GRNR 
Sbjct: 473 IVHDADSALYRAKQKGRNRT 492


>gi|126735430|ref|ZP_01751176.1| GGDEF domain protein [Roseobacter sp. CCS2]
 gi|126715985|gb|EBA12850.1| GGDEF domain protein [Roseobacter sp. CCS2]
          Length = 260

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 115/258 (44%), Gaps = 31/258 (12%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63
            +K+FLS W         F+  T     SI  S+ +   +F  N     + L P      
Sbjct: 15  QMKEFLSSWRG------VFAAATLTTLASICVSVLMVYFLFQGNDLHAALRLAP------ 62

Query: 64  ILVENLSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRI---DCLSGLLNHSAFI 119
                    +IS+ I+  + + I   +   + +S+    +L RI   D L+ +     F 
Sbjct: 63  ---------VISVVIAFPVTFFIWSQVRSNIQLSF----ELQRIVDRDRLTDVATRDFFF 109

Query: 120 SSL-GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           + + G  N     +  DID+FK +ND FGH  GDKVI+ +++ L         V R GGE
Sbjct: 110 ARMRGDPNAYGISLMVDIDFFKVVNDTFGHIAGDKVISRVAEILYENTRPDDIVCRFGGE 169

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EF        + +   +A  +R+ I    I    G ++ +T+S G + +   + +   I 
Sbjct: 170 EFVIFLHQQDKADGFAIAERMREAIAEEVIEF-DGHNLSVTVSIGGSLKERLKDVEFAIQ 228

Query: 239 RADQALYVAKKSGRNRVV 256
           +ADQALY AK +GRNR V
Sbjct: 229 QADQALYQAKANGRNRTV 246


>gi|15891183|ref|NP_356855.1| GGDEF family protein [Agrobacterium tumefaciens str. C58]
 gi|15159539|gb|AAK89640.1| GGDEF family protein [Agrobacterium tumefaciens str. C58]
          Length = 302

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 17/211 (8%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F+  E +  +   L + S    L  GY +    ++L +      + S+ D L+G  N   
Sbjct: 99  FWMTETVQQDGWMLCVASDVTELRQGYRTLRQDRDLAV------RASQTDELTGTANRRF 152

Query: 118 FISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHPVGDKVIA-FLSDQLVVVFGT 168
             + L    E++S        +   DID+FKQIND FGH  GD V+  F+     V+   
Sbjct: 153 VFAKLALQVEQVSKGLEAPFCLCTLDIDFFKQINDRFGHKCGDAVLRDFVGIAHSVIRRV 212

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
             F GR+GGEEF      SS  E   +   L + +  S+  +S  P    + SAG+    
Sbjct: 213 DCF-GRIGGEEFMLILPRSSIAEGREIVERLLQKVRLSR-PLSEFPDFSYSCSAGMTVFR 270

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             E    +  RADQALY AK+ GR+R++  +
Sbjct: 271 MMENADDVFMRADQALYAAKEKGRDRLLAVT 301


>gi|82701771|ref|YP_411337.1| diguanylate cyclase [Nitrosospira multiformis ATCC 25196]
 gi|82409836|gb|ABB73945.1| diguanylate cyclase (GGDEF domain) [Nitrosospira multiformis ATCC
           25196]
          Length = 569

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 87/174 (50%), Gaps = 12/174 (6%)

Query: 92  ELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           E     NR + +LS  D L+GL N +   + L              +++  DID+FK +N
Sbjct: 394 EAMQQQNRMLEKLSITDSLTGLYNRNKLDAILADQLARFRRTQRPFALLMLDIDHFKTLN 453

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GDK++A ++  L+    +  +  R GG+EF    + +   +A   A  +R  +
Sbjct: 454 DTYGHITGDKILAKVAQILLQSIRSIDYAARYGGDEFIIILVETYIDQAVKTAERIRTHV 513

Query: 204 ENSQINISSGPS-IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           E  ++   +G S I IT+S G  E R      + +  RAD ALY AK++GRN+ 
Sbjct: 514 E--KLTYPAGKSTISITVSIGAVECRSDDSTTTAVFSRADNALYEAKRAGRNQA 565


>gi|148253697|ref|YP_001238282.1| PAS/PAC sensor-containing diguanylate cyclase [Bradyrhizobium sp.
           BTAi1]
 gi|146405870|gb|ABQ34376.1| diguanylate cyclase with PAS/PAC sensor [Bradyrhizobium sp. BTAi1]
          Length = 636

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 91/182 (50%), Gaps = 24/182 (13%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPV 150
            R+  L+  D L+GL N   F   L      +Y +K  L+++  DID+FK  ND++GHP 
Sbjct: 447 GRLETLAIEDGLTGLANRRRFDERLLEEWGRAYRDKTSLALLMIDIDHFKAFNDSYGHPA 506

Query: 151 GDK----VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GD+    V   L+D+      +     R GGEEFA     +     A L   +R+ +  +
Sbjct: 507 GDECLHTVAGILADEAQR---SSDLAARYGGEEFAILLPNTDAAGCARLGERIRRALHEA 563

Query: 207 QI-NISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +I +  +GP I +T S G A      ER      +++I  AD+ALY AK  GR+RVV   
Sbjct: 564 RITHDHNGPGI-VTASIGGAVCRPGFERSAGP--ASLIEAADRALYAAKDGGRDRVVMAG 620

Query: 260 DI 261
           +I
Sbjct: 621 EI 622


>gi|329894074|ref|ZP_08270059.1| two-component response regulator [gamma proteobacterium IMCC3088]
 gi|328923246|gb|EGG30566.1| two-component response regulator [gamma proteobacterium IMCC3088]
          Length = 414

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 90/175 (51%), Gaps = 17/175 (9%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148
           S ++++QL+  D L+GL N   F S      E        LSI+  D+D FK  ND+ GH
Sbjct: 243 SNDKLAQLALTDFLTGLKNVRFFDSEYKKLWENSTTSGTPLSIILLDVDCFKLYNDSLGH 302

Query: 149 PVGDKVIAFLSDQLVVVFGTPMF----VGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GD+ +  + +   V+   P F    V R+GGEEFA     ++EQ A   A  +  I+E
Sbjct: 303 LAGDECLKRIGE---VLLTHPGFHRGLVARIGGEEFAIVMENNAEQ-ALEEAERIVAIVE 358

Query: 205 NSQI-NISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           +  I + SS     +T++AG+A R   +     ++ RAD ALY AK  GRNR + 
Sbjct: 359 HLSIPHPSSLVGASVTVTAGVATRSSLDSSREKLLSRADYALYHAKSLGRNRAMA 413


>gi|323492479|ref|ZP_08097627.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
 gi|323313266|gb|EGA66382.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
          Length = 509

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 106/212 (50%), Gaps = 17/212 (8%)

Query: 59  YGLEYILVENLSLVIISI-----TISLLLGYISGSILKE----LFISYNRISQLSRI--- 106
           + L+  +  N S+V+ +I     TI+ LL YI   ++++      +   R  +L  +   
Sbjct: 296 FKLDRQVTHNDSVVLAAIFVSGLTIACLLSYIVLLLVRDKEHLAVLLDERTEELQFLVMH 355

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+G+ N  AF   +  L   N+  S++ FD+D FK IND+FGH  GD+++  ++  + 
Sbjct: 356 DSLTGIYNRRAFSQYLRELVRTNQGFSLITFDVDRFKLINDHFGHVAGDEMLVCVAQIVQ 415

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                     R+GG+EF   +  + +Q+     N +R  +    ++  SG  I  T+S G
Sbjct: 416 RHLADEDLFVRMGGDEFCILSTVTDKQQLGEYLNAIRCAVAEL-VHTHSGQRIRCTLSIG 474

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            A R   E    I+  +D  LY +K++GRNRV
Sbjct: 475 AAIR-RDEGEEDIMQASDAQLYKSKQAGRNRV 505


>gi|163853382|ref|YP_001641425.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163664987|gb|ABY32354.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 369

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 13/170 (7%)

Query: 107 DCLSGLLNHSAFISSL----------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           D L+GL N   F  SL              +  S++  DID FK+ ND +GH  GD+V+ 
Sbjct: 195 DALTGLGNRKNFEESLRKSVDRQSASAQQGKPASLIVIDIDSFKRFNDLYGHLTGDQVLR 254

Query: 157 FLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INISSGP 214
            ++  +    G     + R GGEEF      +   EA  +A  +R  +   + +  S+G 
Sbjct: 255 LVAIVMREHIGEKNATLARFGGEEFGIVLPETDRVEARAIAERVRIGVTGRELVKRSTGE 314

Query: 215 SI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           S+  +T+S G+A +   +   +++ RAD  L+ AK++GRNR +  +++EN
Sbjct: 315 SLGKVTVSLGVATQREDDNAVSLLERADACLFAAKRAGRNRTLDETEVEN 364


>gi|307721244|ref|YP_003892384.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
 gi|306979337|gb|ADN09372.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
          Length = 520

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 77/160 (48%), Gaps = 9/160 (5%)

Query: 107 DCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++G  N         A  S     N KL+++  DID FK IND +GH +GD  I  + 
Sbjct: 362 DYMTGAYNRRYFFEVARALFSRAKRKNTKLAVIMIDIDNFKAINDTYGHDIGDLAIIEVR 421

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L           R GGEEF A     S+++   L   +RK  EN++I  S   +I  T
Sbjct: 422 KVLERNLRKYDLFARFGGEEFCALLDDISKEDVEKLFEKIRKDFENNRI-TSGDMTIGYT 480

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +S GIA       +   I  AD+ALY +K++G+N+V  + 
Sbjct: 481 VSFGIAYGMM-SSLEKFIKVADEALYTSKQNGKNQVTIYE 519


>gi|262369497|ref|ZP_06062825.1| diguanylate cyclase [Acinetobacter johnsonii SH046]
 gi|262315565|gb|EEY96604.1| diguanylate cyclase [Acinetobacter johnsonii SH046]
          Length = 458

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 75/154 (48%), Gaps = 7/154 (4%)

Query: 107 DCLSGLLNH---SAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ LLN    S  +S   ++  K    LS++  D DYFK+IND +GH  GD  + F++
Sbjct: 294 DSLTQLLNRRYLSTIVSREINFARKNDAALSLLAIDADYFKRINDKYGHTAGDLALRFIA 353

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L+ V     +  R+GGEEF    + S    A  +A  +R  I+ + I  + G S   T
Sbjct: 354 EVLLDVAKGSDYAFRVGGEEFLLLLVDSDRTRALQVAETIRMRIQETPIRTAHGQSFSFT 413

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +S G             +  AD ALY AK  GRN
Sbjct: 414 VSIGCTVYNGHPDYQRFLDTADSALYAAKNKGRN 447


>gi|260467212|ref|ZP_05813388.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum
           WSM2075]
 gi|259028987|gb|EEW30287.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum
           WSM2075]
          Length = 688

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 84/168 (50%), Gaps = 20/168 (11%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVF----FDIDYFKQINDNFGHPVGDK- 153
           +LSR D L+GL N  A    L  Y    +KL   F     D+D+FK+ ND +GH  GD+ 
Sbjct: 251 RLSRTDPLTGLENRRAIDEKLRDYWNDWQKLGTGFVAILIDVDFFKKFNDCYGHQEGDRC 310

Query: 154 ---VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209
              V   LSD +    G+   +GR GGEEF   A    + + A LA  + + +EN  I  
Sbjct: 311 LIQVANALSDMIKHYNGS---IGRYGGEEFIVLARMEKKDQVADLAEAICRTVENLAIAH 367

Query: 210 --ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
                G SI +T S G A   +     +  II+ AD+ALY+AK  GRN
Sbjct: 368 ELRRDGISI-VTASVGAAFTRKQTGAKLEKIIHEADRALYLAKAGGRN 414


>gi|158426164|ref|YP_001527456.1| putative sensory box/GGDEF family protein [Azorhizobium caulinodans
           ORS 571]
 gi|158333053|dbj|BAF90538.1| putative sensory box/GGDEF family protein [Azorhizobium caulinodans
           ORS 571]
          Length = 772

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 14/180 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDN 145
           + +  ++ +++ Q +  D L+GL N +AF  SL     ++N  + ++  D+D  K +ND 
Sbjct: 318 ITDRLMAEDKVRQAALHDALTGLSNRAAFQLSLEAACAAFN-SVCLLLVDLDSLKDVNDT 376

Query: 146 FGHPVGDKVIA----FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +GH  GD ++      L  Q+    G   FV RLGG+EF     G    EA  +A  L  
Sbjct: 377 YGHDAGDALLVETARRLGQQVEERVGGRGFVARLGGDEFVVLLAGVRLPEAIDMAETL-- 434

Query: 202 IIENSQINIS-SGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFS 259
            I   +  I   G S+    S G+AER  +   S  ++  AD ALY AK  GRNR V ++
Sbjct: 435 -IAGLRAPIWYGGRSLIARASVGVAERMGETQTSGELMKNADLALYAAKSQGRNRAVVYA 493


>gi|238787313|ref|ZP_04631112.1| hypothetical protein yfred0001_33000 [Yersinia frederiksenii ATCC
           33641]
 gi|238724575|gb|EEQ16216.1| hypothetical protein yfred0001_33000 [Yersinia frederiksenii ATCC
           33641]
          Length = 414

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 6/134 (4%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           Y +  S++  D+D+FK IND  GH  GD+V+  L+  L  +      V R GGEEF    
Sbjct: 285 YGQNFSLILLDVDHFKSINDQLGHHKGDEVLILLARTLESIIRECDIVFRWGGEEFVILL 344

Query: 185 LGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
             +    A  +A  +R+ I+   Q N+       +T+S G+A+    E   ++  R D+A
Sbjct: 345 PLTDLNGALQVAESIRETIQMICQPNLP-----QLTVSLGVAQHQVGEDTDSLFKRMDEA 399

Query: 244 LYVAKKSGRNRVVC 257
           LY AK SGRNRV+ 
Sbjct: 400 LYRAKASGRNRVLA 413


>gi|325497696|gb|EGC95555.1| diguanylate cyclase; GGDEF domain; PLP-dependent transferase
           [Escherichia fergusonii ECD227]
          Length = 564

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 101/202 (50%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSA------FISS 121
           L+L+    T  L++ +I    ++  +F+  + +   +  D L+ L N  A      F++ 
Sbjct: 356 LTLLWALFTTMLIISWIVIRKMVSNMFVLQSSLQWQAWHDTLTRLYNRGALFEKARFLAQ 415

Query: 122 LGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               N++  S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 ECRENQRPFSVIQVDLDHFKSINDRFGHQAGDRVLSHAAGLISRSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIY 238
                 ++  +A  +A  +R  +   +I I+   ++ I+ S G++  E         +  
Sbjct: 476 CIVLPCANLAQAQEIAERIRLRLNEKEILIARSTTLRISASLGVSSTEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD  LY+AK++GRNR VC SD
Sbjct: 536 LADGRLYLAKQAGRNR-VCASD 556


>gi|294678156|ref|YP_003578771.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Rhodobacter capsulatus SB
           1003]
 gi|294476976|gb|ADE86364.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Rhodobacter capsulatus SB
           1003]
          Length = 466

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 10/168 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+ +D L+GL N    +  +    E+        +++  DID FK +ND +GH  GD+V
Sbjct: 295 RLALVDPLTGLYNRRYAMPHVARLAERSRHSGRSFAVMVLDIDRFKSVNDTYGHAAGDRV 354

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++ +L +       V R+GGEEF  A   +S + A   A  L +++E +   +  G 
Sbjct: 355 LIEVARRLTLNLRQVDLVARVGGEEFLIAMPETSLEAARATAERLCRVMEETPFELHDGH 414

Query: 215 SIHITIS---AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++ IT+S   A          +  +I +AD AL  +K  GRN+V  F 
Sbjct: 415 ALRITVSIGLALGGGHGGTGTVEQVINQADHALMSSKAEGRNQVKIFK 462


>gi|258625517|ref|ZP_05720409.1| GGDEF family protein [Vibrio mimicus VM603]
 gi|258582223|gb|EEW07080.1| GGDEF family protein [Vibrio mimicus VM603]
          Length = 696

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 13/178 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQIND 144
           +EL     +++Q +R D L+ L N  A+   +  Y       + +++   D+D FK +ND
Sbjct: 521 QELQNVNRKLAQAARTDSLTQLYNRRAYEEFIQEYWQTYQAQQPITLAVMDLDGFKLVND 580

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GH VGD+++   +D L  +F  P   + RLGG+EFA    G  +Q    L   +  I 
Sbjct: 581 QLGHQVGDELLRLFADLLRDIFDRPTDRLTRLGGDEFAVIMSGFEQQSHLNLLAQV--IT 638

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRVVCFS 259
           E SQ    S    H+++S G A       ++T  +   ADQALY AK +G+ ++V FS
Sbjct: 639 EFSQRTAQSFN--HLSVSIGAASIIPTPAMTTDSFFSLADQALYQAKANGKQQLVVFS 694


>gi|238892462|ref|YP_002917196.1| hypothetical protein KP1_0227 [Klebsiella pneumoniae NTUH-K2044]
 gi|238544778|dbj|BAH61129.1| hypothetical protein KP1_0227 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 510

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 21/175 (12%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           K+  +SY R +    ID L+G  N  AF   I++L + ++  ++   DID FK IND +G
Sbjct: 346 KQRELSYVRQAT---IDALTGCKNRRAFDSDIAALMNDHQPFALALVDIDNFKSINDTWG 402

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVG--RLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           H  GD V+  ++ + + V   P+ +   R GGEEFA           A   ++ R ++E 
Sbjct: 403 HLNGDIVLRNVAREGLQVL-QPLEISLYRYGGEEFAVVF-------PAEHIDNARTLLET 454

Query: 206 SQINISSG----PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +IN+         + +T SAG+ E  + EP+  ++   D+ALY AK+ G+NR++
Sbjct: 455 WRINVERRTWREDGLTVTFSAGLGE-WNMEPLDKLVVSVDEALYKAKQQGKNRIL 508


>gi|298530359|ref|ZP_07017761.1| diguanylate cyclase with PAS/PAC sensor [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509733|gb|EFI33637.1| diguanylate cyclase with PAS/PAC sensor [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 915

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/160 (34%), Positives = 81/160 (50%), Gaps = 11/160 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL+N S F   +     +       LSI+  DID FKQ ND +GH  GD+ +  ++
Sbjct: 753 DHLTGLMNRSRFDQLMEEEWRRAKRGGHCLSILMLDIDNFKQFNDFYGHIQGDRCLQRIA 812

Query: 160 DQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217
             L   +      + R GGEEF A    +  Q A ++A  +R  +EN  + N  S     
Sbjct: 813 GILSACLMRAGDVLARYGGEEFIALLPDTPLQSAVVVAEKMRMSVENLGMPNTGSQAGPF 872

Query: 218 ITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255
           +++SAG+A  C    +S   +I++AD  LY AK  GRN V
Sbjct: 873 VSVSAGVASSCPFPGMSRQGLIHQADMMLYKAKSLGRNTV 912


>gi|168215933|ref|ZP_02641558.1| GGDEF domain protein [Clostridium perfringens NCTC 8239]
 gi|182381581|gb|EDT79060.1| GGDEF domain protein [Clostridium perfringens NCTC 8239]
          Length = 545

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 5/167 (2%)

Query: 99  RISQLSRI-DCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           R S+L  + D L  + N     ++I++L   +  +S +  D+DYFK  NDN+GH  GD +
Sbjct: 372 RDSKLDSLKDGLCNIYNRRFLDSYINNLKEKDLPISFLMIDVDYFKLYNDNYGHQAGDFI 431

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213
           +  ++  L         V R GGEEF     G+S+  +   A  +++ ++N  I    S 
Sbjct: 432 LKSIASVLEKNSRKEDIVARYGGEEFCVLLKGASKYSSINYAKRIKENLDNLNIKHKYSK 491

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            S H+T S GI     K  +   I  +D+ALY++K  GRN      D
Sbjct: 492 TSDHVTFSIGIYTTYTKNDLKNAIKFSDKALYISKTRGRNTYTYLED 538


>gi|118591951|ref|ZP_01549346.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Stappia aggregata IAM 12614]
 gi|118435594|gb|EAV42240.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Stappia aggregata IAM 12614]
          Length = 620

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 107/223 (47%), Gaps = 23/223 (10%)

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCL 109
           LF+  LT F  +E   +E+  +++I   ++  + ++     KEL  +  R+ Q +  D L
Sbjct: 139 LFWNQLT-FAVVEGKTLEDTKIILICRDVTSQVEHV-----KELENARTRLKQQAEHDDL 192

Query: 110 SGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +G+ N S   S L          + ++ I+ FD+D+FK IND+ GH  GD V+  ++  +
Sbjct: 193 TGVANRSKLNSYLMERIAEGVDGSARIGIIHFDLDHFKDINDSHGHSAGDTVLRHVAMVM 252

Query: 163 VVVFGTPMFVGRLGGEEFAAA---ALGSSEQE--AAILANDLRKIIENSQINISSGPSIH 217
             V G    V R+GG+EF A      G  E E     +   L K +   +  +    S+ 
Sbjct: 253 SRVLGNRGLVARIGGDEFVAVVSDPQGPEEMEDLGTRILEGLAKPVRVDRHEVRVAGSVG 312

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + ++            S +I  AD ALY AK+SGR+++  ++D
Sbjct: 313 LVLADAATASA-----SELINCADIALYAAKRSGRSQISWYTD 350


>gi|320101645|ref|YP_004177236.1| diguanylate cyclase [Isosphaera pallida ATCC 43644]
 gi|319748927|gb|ADV60687.1| diguanylate cyclase [Isosphaera pallida ATCC 43644]
          Length = 428

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 13/163 (7%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F+  +  + E+       L+++  D+D+FK +ND  GH VGD+V+  ++
Sbjct: 174 DPLTGLYNRLYFLEEIYHWVERHPRRSSGLALLLIDLDHFKNVNDEHGHAVGDRVLRLVA 233

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIH- 217
           + L    G    + R GGEEF AA   S    A  LAN +R ++          G S+  
Sbjct: 234 EVLERALGEEALLSRFGGEEFIAAMEVSDLDAACALANRVREEVARRPYRPFGYGGSVQL 293

Query: 218 -ITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +T+S G+A    R        +I  AD  L  AK+ GRNRV+
Sbjct: 294 SLTLSVGVAYLPPRGDPVEPDQMIRAADLCLGQAKRRGRNRVI 336


>gi|313500362|gb|ADR61728.1| Diguanylate cyclase [Pseudomonas putida BIRD-1]
          Length = 493

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 82/160 (51%), Gaps = 8/160 (5%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+ +D L+GL N  +F       +      +  +  +  D+D+FK +NDN GH  GD+V+
Sbjct: 328 LATLDSLTGLHNRRSFDLLAAQALREARRDSSPMVALLIDLDHFKALNDNHGHLAGDEVL 387

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              ++ L         + R GGEEF      +  ++A  +A  +R+  E    +  + P 
Sbjct: 388 RQFANVLQGSLRQSDILCRWGGEEFIVLLREAEGRQAIEVAEKIRRRTEQLTFSYDNQP- 446

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + +T S G++     + +  ++ RAD+ALY AK++GRNRV
Sbjct: 447 LRLTTSIGLSSLQPGDTLHALLTRADRALYRAKQAGRNRV 486


>gi|307945245|ref|ZP_07660581.1| diguanylate cyclase [Roseibium sp. TrichSKD4]
 gi|307771118|gb|EFO30343.1| diguanylate cyclase [Roseibium sp. TrichSKD4]
          Length = 406

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 91/185 (49%), Gaps = 14/185 (7%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDID 137
           + +LLGY+   + KE    + R+   S+ID L+GLLN  A    +   +    I+  D+D
Sbjct: 216 VVILLGYV---MEKE----HKRVFNRSQIDGLTGLLNRRAIEELIDISSNPYGIILLDLD 268

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK++ND  GH  GD+V+  +++ L         V R  GEEF  A   +S  E    A 
Sbjct: 269 HFKEVNDTHGHAAGDEVLRNVANLLQSSLRKDDHVARWSGEEFVIALRTNSIDELKEAAE 328

Query: 198 DLRKII---ENSQINISSG-PSIHITISAGIAERCHKEPISTI---IYRADQALYVAKKS 250
            LR  I     S IN  +    I I ++A +    H    ST+   I +AD ALY AK  
Sbjct: 329 RLRSRIGALNTSVINEDNDFELIDIKVTASLGCSMHIPKGSTLADAIEKADGALYEAKAR 388

Query: 251 GRNRV 255
           GR++V
Sbjct: 389 GRDQV 393


>gi|300920287|ref|ZP_07136731.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
 gi|300412696|gb|EFJ96006.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
          Length = 460

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 9/173 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LSI+  D+D FK
Sbjct: 281 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTILKREIAHANRAGTPLSILIIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +++ +   +A  +R
Sbjct: 339 EINDTWGHNTGDEILRQVSQAFYDNVRSSDYVFRYGGDEFIIVLTEATQTDTLRIAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             +E ++I   +G  I +++S G A          +I  AD+ALY AK+ GRN
Sbjct: 399 SRVEKTKIKSPAGDFIPLSLSIGAAMFNGHPDYERLIQIADEALYTAKRRGRN 451


>gi|260556102|ref|ZP_05828321.1| ggdef domain/eal domain-containing protein [Acinetobacter baumannii
           ATCC 19606]
 gi|260410157|gb|EEX03456.1| ggdef domain/eal domain-containing protein [Acinetobacter baumannii
           ATCC 19606]
          Length = 684

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 93/177 (52%), Gaps = 12/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +   ++ LS  D L+ L N           +S     ++K++ ++ D+D FK +ND
Sbjct: 246 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSDHRYKDQKIAFLYIDLDRFKSVND 305

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD+++  ++++L         + R+GG+EF   A  +  +EA  LA  +  +I+
Sbjct: 306 AFGHHFGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLIAENTDTEEAMQLAEKVLHLIQ 365

Query: 205 NS-QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +S QI   SG  I+I+ S GIA    H + +  ++  AD A+ ++K+ GRN    FS
Sbjct: 366 DSYQI---SGKEINISASLGIALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTVFS 419


>gi|56460650|ref|YP_155931.1| signal protein [Idiomarina loihiensis L2TR]
 gi|56179660|gb|AAV82382.1| Signaling protein with a PAS and GGDEF domains [Idiomarina
           loihiensis L2TR]
          Length = 300

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 22/167 (13%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G++N  AF       I+ L ++    ++ F D+D FK+IND  GH  GD V+  ++
Sbjct: 142 DHLTGIMNRRAFTAQLQDEINQLEAHGTPFAVSFIDLDDFKEINDEHGHHFGDLVLQKIA 201

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG---PSI 216
           D + +      +V R+GG+EFA            I A D R ++   +  + SG     +
Sbjct: 202 DLIRLHSRHTDYVARIGGDEFATI-------HPMISAEDARLMMHRLRCQLVSGIGHAEL 254

Query: 217 HITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRVVCFS 259
            +T+S G+ + C K      I  I+ RAD+A+Y AK  G+N VV  S
Sbjct: 255 PVTLSIGLCQ-CDKPSEHYTIEGIMARADKAMYQAKSEGKNAVVLTS 300


>gi|77458403|ref|YP_347908.1| diguanylate cyclase with GAF sensor [Pseudomonas fluorescens Pf0-1]
 gi|77382406|gb|ABA73919.1| putative GGDEF/GAF domain sensory box protein [Pseudomonas
           fluorescens Pf0-1]
          Length = 321

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 12/177 (6%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVF 133
           LL  ++G   +EL        Q++ +D L+ L N   F       + +     +  +++F
Sbjct: 146 LLRDLAGMAEQELMAV-----QMASMDELTLLSNRRGFKMLAQHALDACARLEKPATLLF 200

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           FD++ FKQIND +GH  GD  +   +D L + F     VGRLGG+EF A   GSS  E  
Sbjct: 201 FDLNDFKQINDLYGHAEGDSALKTFADVLRIAFRESDVVGRLGGDEFVALLTGSSHVETT 260

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
            +   L++I+E     +  G +I  ++          E +  ++  AD A+Y  K++
Sbjct: 261 AIMARLKEILEERNATLHRGYAIRFSVGQIEYNPQRHESVDKLLADADAAMYEHKQA 317


>gi|95928348|ref|ZP_01311096.1| ammonium transporter [Desulfuromonas acetoxidans DSM 684]
 gi|95135619|gb|EAT17270.1| ammonium transporter [Desulfuromonas acetoxidans DSM 684]
          Length = 606

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 13/134 (9%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +S++  DID+FK IND +GH VGD V+  L++ +  +        R GGEEF        
Sbjct: 480 MSVIIIDIDHFKTINDTYGHDVGDVVLKELAELIQQLIRNQDLFARWGGEEFILLC---- 535

Query: 189 EQEAAILANDLRKIIENSQINISSGPSI---HITISAGI--AERCHKEPISTIIYRADQA 243
             E +IL ++ R+I E  + +I++ P     H+T S G+   ER   +P   +   AD+A
Sbjct: 536 --ETSIL-DEARRIAEKLRSSIAAYPFTTVNHLTCSFGVCSPER-PDQPFDALFKDADEA 591

Query: 244 LYVAKKSGRNRVVC 257
           LY AK+ GRNRV C
Sbjct: 592 LYRAKELGRNRVCC 605


>gi|332308245|ref|YP_004436096.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175574|gb|AEE24828.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 367

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 101/197 (51%), Gaps = 17/197 (8%)

Query: 71  LVIISITISLLL-GYISGSILKELFISYNRISQLSR---IDCLSGLLNHSAFISSL---- 122
           L+I S+ + LLL  +    +L+E   ++  I QL R    D L+ L N   F + L    
Sbjct: 167 LIIASVAVLLLLINHACQRVLRE---NFQLIKQLYRDTIRDSLTQLYNKRFFDTQLDNLL 223

Query: 123 ---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGE 178
              G  +  +S+V  D+D+FK+IND  GH VGD V+  ++  L      P   G R+GG+
Sbjct: 224 LLMGREHIPVSLVLVDVDHFKRINDKHGHRVGDHVLGCIATILQSYCRRPNDYGFRIGGD 283

Query: 179 EFAAAALGSSEQEAAILANDLR-KIIENSQINIS-SGPSIHITISAGIAERCHKEPISTI 236
           EFA    G S+++   +  ++R K++E S  + S +  S  ++I A + E+      + +
Sbjct: 284 EFAILFYGISKEKLISVCEEMRSKVMEISLDDDSNTAESPQVSIGACVTEKTSHYTSAEL 343

Query: 237 IYRADQALYVAKKSGRN 253
              AD ALY AK  GRN
Sbjct: 344 FEAADNALYKAKAQGRN 360


>gi|320332739|ref|YP_004169450.1| GAF sensor-containing diguanylate cyclase [Deinococcus maricopensis
           DSM 21211]
 gi|319754028|gb|ADV65785.1| diguanylate cyclase with GAF sensor [Deinococcus maricopensis DSM
           21211]
          Length = 607

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 75/159 (47%), Gaps = 8/159 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N           +     +   LSI+  D+D+FK+ ND FGH  GD V+  L+
Sbjct: 446 DPLTGLFNRRYLDETFEREVRRAERHRRSLSILMLDVDHFKRFNDTFGHEAGDAVLVALA 505

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +   F     V R GGEEFA     +S Q+    A  LR      +  +       I+
Sbjct: 506 QLMTRHFRREDIVCRYGGEEFAVLLTDASFQDGLNRAEALRAATAELRPTLQGRALGGIS 565

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IS G++    H    + ++  AD ALY AK++GRNRV+ 
Sbjct: 566 ISVGVSGFPEHARDSAELLRLADSALYEAKQAGRNRVMA 604


>gi|299530671|ref|ZP_07044086.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298721187|gb|EFI62129.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 312

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 11/183 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFK 140
           ++  EL ++  +++++  +D L+GL+N         A I++    +  L+++  D+D+FK
Sbjct: 119 TVSAELHLANQKLNEMVELDALTGLVNRRGLDRMLHAEIAAARRESRPLTLMLCDLDHFK 178

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GH  GD+ +  +   L  V   P     R GGEEFA     +    +   A  L
Sbjct: 179 HFNDTYGHVQGDECLKQVGRLLREVCVRPRDIAARYGGEEFAMILPNTPRSGSMTFARAL 238

Query: 200 RKIIENSQINIS-SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
            ++++  +I    +   I +T+S GI      E  S  +++ RAD+ALY AK  GRNR  
Sbjct: 239 GQMLKFLKIRPPGAAEDIPLTLSGGITTCIPDEHTSAESMLMRADEALYAAKSQGRNRFF 298

Query: 257 CFS 259
            F 
Sbjct: 299 SFE 301


>gi|258623193|ref|ZP_05718202.1| GGDEF family protein [Vibrio mimicus VM573]
 gi|258584491|gb|EEW09231.1| GGDEF family protein [Vibrio mimicus VM573]
          Length = 696

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 13/178 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQIND 144
           +EL     +++Q +R D L+ L N  A+   +  Y       + +++   D+D FK +ND
Sbjct: 521 QELQNVNRKLAQAARTDSLTQLYNRRAYEEFIQEYWQTYQAQQPITLAVMDLDGFKLVND 580

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GH VGD+++   +D L  +F  P   + RLGG+EFA    G  +Q    L   +  I 
Sbjct: 581 QLGHQVGDELLRLFADLLRDIFDRPTDRLTRLGGDEFAVIMSGFEQQSHLNLLAQV--IT 638

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRVVCFS 259
           E SQ    S    H+++S G A       ++T  +   ADQALY AK +G+ ++V FS
Sbjct: 639 EFSQRTAQSFN--HLSVSIGAASIIPTPAMTTDSFFSLADQALYQAKANGKQQLVVFS 694


>gi|254485748|ref|ZP_05098953.1| diguanylate cyclase response regulator [Roseobacter sp. GAI101]
 gi|214042617|gb|EEB83255.1| diguanylate cyclase response regulator [Roseobacter sp. GAI101]
          Length = 467

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 16/163 (9%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N    +S L       G  +   +++  D+D+FK+IND FGH  GD V+   +
Sbjct: 296 DPLTGLYNRRYAMSELARLIENAGKSDTHFAVMLADMDHFKRINDAFGHAAGDSVLVETA 355

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHI 218
            +L         V R+GGEEF     G++  +A  +A  L +   ++   I SS  ++ I
Sbjct: 356 RRLRSQLRPIDMVARIGGEEFLLVVPGTTALDATQVAERLCRTFRDAPFIIPSSNTAVTI 415

Query: 219 TISAGIAER--------CHKEPISTIIYRADQALYVAKKSGRN 253
           TIS G+              +  + +I +ADQALY AK  GRN
Sbjct: 416 TISIGVCMSDSLTLTLPAQDDKAARLIDQADQALYAAKSRGRN 458


>gi|254249563|ref|ZP_04942883.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
 gi|124876064|gb|EAY66054.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
          Length = 528

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 95/207 (45%), Gaps = 19/207 (9%)

Query: 68  NLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           + ++ I S  + L +G++  S+L     ++   +   +  L+R D L+GL N      +L
Sbjct: 310 DRAIPIGSAMVLLAIGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRMLDVTL 369

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGR 174
                +       LS++F D+DYFK  ND  GH  GD  +A +   +      P  +  R
Sbjct: 370 AREWRRAARSQHALSLLFIDVDYFKHYNDTQGHQAGDDALAAVGHCIAGCLRRPADYAAR 429

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI----AERCHK 230
            GGEEF           A  +A  +R  I +  I   +G    +T+S G+     ER   
Sbjct: 430 YGGEEFVVVLPDIDTDGAVTIAETIRTGILDLGIRHDAGTVGRLTVSIGVTTSYPER--D 487

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVC 257
           + I   +  AD+ALY AK+ GRNR+V 
Sbjct: 488 DNIQAALKLADEALYRAKEGGRNRIVV 514


>gi|221068368|ref|ZP_03544473.1| diguanylate cyclase [Comamonas testosteroni KF-1]
 gi|220713391|gb|EED68759.1| diguanylate cyclase [Comamonas testosteroni KF-1]
          Length = 616

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 98/209 (46%), Gaps = 15/209 (7%)

Query: 63  YILVENLSLVIISITISLLLGYIS-----GSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           Y +    +L+I S+  +L + +I      G  LK    + + ++ L+R D L+GL N   
Sbjct: 401 YAVWRQRALLIASVMGTLTMAFIGLSFAFGVQLKRRMRAESELALLARTDGLTGLNNRRK 460

Query: 118 F-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
                          +   S++F DID+FK  ND +GH  GD V+A ++  +      P 
Sbjct: 461 LDEIIEHEWHRAKRSHSAFSLLFVDIDWFKAYNDTYGHQAGDMVLATVARCIANNIRRPE 520

Query: 171 -FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               R GGEEF      ++    A++A ++R+ +    I  +      IT+S G A    
Sbjct: 521 DSAARYGGEEFIVVLPDTTLDGGALIAENIREAVSELAIAHTGSEFGCITVSIGCAAWVP 580

Query: 230 KE--PISTIIYRADQALYVAKKSGRNRVV 256
            +   +  ++  AD+ALY AK +GRN+VV
Sbjct: 581 GKDLDVQEVLRSADKALYGAKMTGRNKVV 609


>gi|319936896|ref|ZP_08011307.1| hypothetical protein HMPREF9488_02141 [Coprobacillus sp. 29_1]
 gi|319807995|gb|EFW04570.1| hypothetical protein HMPREF9488_02141 [Coprobacillus sp. 29_1]
          Length = 818

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 11/171 (6%)

Query: 102 QLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L++ D L+ + N +A       F+    +Y  +L+ +  DID+FK IND +GH  GD+V
Sbjct: 649 ELAQRDSLTKIYNSAACRDLINKFLEEEKNYKGRLAFIILDIDHFKSINDQYGHYFGDRV 708

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEF-AAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  L+  L  V  +   +GR+GG+EF        S +   +    L +++ +   +I   
Sbjct: 709 LQELAMTLSRVTKSTDILGRVGGDEFIIGLKYPESIEYVEVYCQRLLEVVSH---HICKD 765

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             I +T+S G+A          +   ADQALY  KK+GRN    ++ +E +
Sbjct: 766 KEIDVTVSLGVAFSRKANTFDDLYQFADQALYQVKKTGRNHYQLYNTLEKD 816


>gi|121594057|ref|YP_985953.1| diguanylate cyclase [Acidovorax sp. JS42]
 gi|120606137|gb|ABM41877.1| diguanylate cyclase [Acidovorax sp. JS42]
          Length = 394

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 7/165 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-SYNEKLS----IVFFDIDYFKQINDNFGHPVGD 152
           +++  ++  D ++ LLN      +L  S+N++ +    ++  D+D+FK+IND +GH  GD
Sbjct: 217 DQLRHIAARDPMTQLLNRRGLTEALQLSFNQRRAEHAHLLVVDVDHFKRINDTYGHHAGD 276

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
            V+  +++ L         V RLGGEEFA   L +    A  +A  LR  IE   I+I+ 
Sbjct: 277 TVLCRVAEILQATARRGDLVSRLGGEEFAVICLNTDFPGAMHMAERLRAAIETQTIDIAE 336

Query: 212 SGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255
            G  +  T++ G+++       +   + +AD ALY  K +GRNRV
Sbjct: 337 GGHPLQCTVTVGVSQGFADAHALEAALQQADAALYRGKAAGRNRV 381


>gi|126463772|ref|YP_001044885.1| diguanylate cyclase [Rhodobacter sphaeroides ATCC 17029]
 gi|126105583|gb|ABN78113.1| diguanylate cyclase [Rhodobacter sphaeroides ATCC 17029]
          Length = 439

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 12/190 (6%)

Query: 74  ISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125
           +++T+   L  ++ +   + + +     R+ +  R D L+ LLN   F  +L        
Sbjct: 241 VAVTVPPELAAVADAFNDMTRTIVEQEARLREFGRRDALTSLLNRREFDHALEQRAAPWT 300

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF--GTPMFVGRLGGEEFAAA 183
            E  +++  DID FK+IND  GH VGD V+  ++ +L      G P+F  R GGEEFA  
Sbjct: 301 GEPYALLLIDIDRFKRINDTHGHAVGDAVLRAVALRLAASARQGLPLF--RYGGEEFALL 358

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              +   EA   A  LR+ +    + +  G  I +TIS GIA     +  + +   AD+A
Sbjct: 359 LDRAGAAEALSEAERLRRAVAEEPVGLEDGTRIAVTISVGIALGARGQAGAELFAAADRA 418

Query: 244 LYVAKKSGRN 253
           LY AK +GRN
Sbjct: 419 LYAAKDAGRN 428


>gi|116049036|ref|YP_792162.1| hypothetical protein PA14_50060 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115584257|gb|ABJ10272.1| hypothetical protein PA14_50060 [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 398

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 85/158 (53%), Gaps = 10/158 (6%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F       ++ +    + LS++  D+D+FK IND +GHP GD+VI   +
Sbjct: 229 DPLTGLFNRREFDQLVLMELARIARQPQPLSLLMVDLDHFKYINDRYGHPFGDEVIRHAA 288

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L     +   V RLGGEEF      ++EQ+A  LA  LR+ +E + +    G  + +T
Sbjct: 289 NLLRGNTRSSDSVARLGGEEFLLLLPDTAEQQARSLAEKLRERLEGTPLATQDG-VLCLT 347

Query: 220 ISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+A  +   +     +   ADQALY AK SGRNRV
Sbjct: 348 ASFGVASLDGGGQASYEQLYSAADQALYRAKSSGRNRV 385


>gi|329896145|ref|ZP_08271358.1| two-component response regulator protein [gamma proteobacterium
           IMCC3088]
 gi|328921964|gb|EGG29329.1| two-component response regulator protein [gamma proteobacterium
           IMCC3088]
          Length = 579

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 100/204 (49%), Gaps = 22/204 (10%)

Query: 71  LVIISITI--SLLLGYISGSILKELFISYNR--------ISQLSRIDCLSGLLNHSAF-- 118
           L+I S+ +  +L  GY     L+   +S N         I +L+ +D L+GLLN  AF  
Sbjct: 371 LLIASVLLMAALWRGYTDKRKLEAELLSRNSKLEDALNTIQKLASVDSLTGLLNRRAFHD 430

Query: 119 -----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                +      +  +S+   D+D FKQIND++GH VGD+V+  ++ +L         V 
Sbjct: 431 IARQALEHKRRTDTPISLALGDVDKFKQINDSYGHAVGDEVLTEIASRLTNSLRGTDVVV 490

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEF      +  + A  LA  LR  +    ++ + G   +++I+ G+A+    + +
Sbjct: 491 RWGGEEFLCFFPTTDIKAAMALAEKLRLAVNAYPVSTAFG-EFNVSITFGLAQ--VDDDV 547

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
              I RAD+ALY  K  G N  VC
Sbjct: 548 QDAIRRADKALYDGKHMGGN--VC 569


>gi|229825564|ref|ZP_04451633.1| hypothetical protein GCWU000182_00925 [Abiotrophia defectiva ATCC
           49176]
 gi|229790127|gb|EEP26241.1| hypothetical protein GCWU000182_00925 [Abiotrophia defectiva ATCC
           49176]
          Length = 478

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 107/216 (49%), Gaps = 29/216 (13%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112
           +G+ P   LE   +  L+LV    +++ L+GY+  +++         + + S ID L+GL
Sbjct: 270 VGVIPDERLEVNSIGELNLV--GESVNNLVGYLRENLV---------LQKKSEIDALTGL 318

Query: 113 LN---HSAFISSLGSY---NEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL--V 163
            N   +  +   L  Y   N+K L +   DIDYFKQ NDN+GH  GD+ I  ++ +L  +
Sbjct: 319 PNRMSYDQYSEELEKYLYANQKTLGVEILDIDYFKQYNDNYGHQNGDECIKMIAGELQKL 378

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISA 222
           V     ++  R GG+EF     G    E      +L+K +++  +    S  S  +T++ 
Sbjct: 379 VQECPKIYAARYGGDEFVIIYPGLLLSEVEGFVKNLKKAVQSKGMEHKFSKASDVVTVTQ 438

Query: 223 GIAERC-----HKEPISTIIYRADQALYVAKKSGRN 253
           G+   C       + +S  + RAD+ALY  KK GRN
Sbjct: 439 GV---CFDIFSKGKTLSDFLKRADEALYEEKKIGRN 471


>gi|221068675|ref|ZP_03544780.1| response regulator receiver modulated diguanylate cyclase
           [Comamonas testosteroni KF-1]
 gi|220713698|gb|EED69066.1| response regulator receiver modulated diguanylate cyclase
           [Comamonas testosteroni KF-1]
          Length = 312

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 90/183 (49%), Gaps = 11/183 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFK 140
           S+  EL ++  +++++  +D L+GL+N         A I++    +  L+++  D+D+FK
Sbjct: 119 SVSAELHLANQKLNEMVELDALTGLVNRRGLDRMLHAEIAAARRESRPLTLMLCDLDHFK 178

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GH  GD+ +  +   L  V   P     R GGEEFA     +    +   A  L
Sbjct: 179 HFNDTYGHVQGDECLKQVGRLLREVCVRPRDIAARYGGEEFALVLPNTPRSGSMTFARAL 238

Query: 200 RKIIENSQINISSG-PSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
            ++++  +I        I +T+S GI      E  S  +++ RAD+ALY AK  GRNR  
Sbjct: 239 GQMLKFLKIRPPGTVEDIPLTLSGGITTCIPDEHTSAESMLMRADEALYAAKSQGRNRFF 298

Query: 257 CFS 259
            F 
Sbjct: 299 SFE 301


>gi|162456909|ref|YP_001619276.1| FHA domain-containing protein [Sorangium cellulosum 'So ce 56']
 gi|161167491|emb|CAN98796.1| FHA domain protein [Sorangium cellulosum 'So ce 56']
          Length = 299

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 104/200 (52%), Gaps = 14/200 (7%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL- 122
           ++++N   V I  TI     ++SG+ ++  +  +  I +++ ID L+ + N      +L 
Sbjct: 104 VVLKNGDRVKIGPTI---FKFLSGADVEAQY--HEEIYRMTIIDGLTQIHNKRYLYEALE 158

Query: 123 -----GSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                G  +E+ L+I+ FDID+FK+IND  GH  GD V+  ++  +           R G
Sbjct: 159 REIIRGRRHERDLAILLFDIDHFKRINDVHGHLAGDFVLKEVARIVQSRIRRDEVFARYG 218

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST- 235
           GEEFA     +S + AA L   LR+ +    + +    SI +TIS G+A     +  +  
Sbjct: 219 GEEFAIILPETSIEGAAALGETLRQKVA-EHLFVFQADSIRVTISVGVALLQEGDRTAND 277

Query: 236 IIYRADQALYVAKKSGRNRV 255
           +I RAD+ LY AK SGRNRV
Sbjct: 278 LIKRADERLYHAKNSGRNRV 297


>gi|134103559|ref|YP_001109220.1| diguanylate cyclase/phosphodiesterase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291008080|ref|ZP_06566053.1| diguanylate cyclase/phosphodiesterase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133916182|emb|CAM06295.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Saccharopolyspora erythraea NRRL
           2338]
          Length = 687

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 13/178 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            R+   +  D L+GL N + F+  LG         E++++ + D+D FK IND+ GH VG
Sbjct: 249 ERLRHQAMHDPLTGLPNRALFLEKLGVALENHGPGERVALCYMDLDGFKVINDSLGHHVG 308

Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKIIENSQI 208
           D ++  +S++L +   G    V R+GG+EF      S   E AI   D  L  ++E  +I
Sbjct: 309 DDLLIAVSERLALSARGENRLVARMGGDEFVILVQDSPGTEQAIEVADRVLDALVEPVRI 368

Query: 209 NISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
               G  + ++ S GI ER    +  + ++  AD  LY AK  G+ +   F    N T
Sbjct: 369 G---GHELSVSASIGIVERPVRGQTAAELMRDADVTLYWAKAEGKGQWALFDPDRNAT 423


>gi|304395058|ref|ZP_07376942.1| diguanylate cyclase [Pantoea sp. aB]
 gi|304357311|gb|EFM21674.1| diguanylate cyclase [Pantoea sp. aB]
          Length = 364

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 2/128 (1%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           K  ++  D+D+FKQ+ND FGH  GD ++A +S  L    G      R GG+E       +
Sbjct: 222 KAWLMLLDVDHFKQVNDTFGHEAGDFLLAEISALLRNSVGLKDIPARFGGDELCVIVRDA 281

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
            E    +LA  +++ I  + + + + P+   ++S GIA     E I   +  AD+ALY  
Sbjct: 282 DEASITLLAEQIKQGI--ALLRLPASPTFQCSVSIGIAPASDAESIHQWLRCADEALYQV 339

Query: 248 KKSGRNRV 255
           K++GRN +
Sbjct: 340 KRAGRNNI 347


>gi|295096828|emb|CBK85918.1| diguanylate cyclase (GGDEF) domain [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 367

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 10/188 (5%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEK 128
           +   +L  ++S      L     R+  +S  D ++G+ N   + + L +        + +
Sbjct: 178 VVYPILFAWLSHRTAIRLAEHKRRLELMSTRDGMTGVFNRRHWETLLRNEFEACRRSHRQ 237

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            +I+  DID+FK IND +GH VGD+ I  ++ QL +   +  ++GR GG+EFA    G+ 
Sbjct: 238 ATILLIDIDHFKTINDTWGHDVGDEAIVAITRQLQLTLRSGDYIGRFGGDEFAVIMSGTP 297

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247
              A    + + + + N  + +   P   + IS G+A    +       +  AD ALY A
Sbjct: 298 ADSAIAAMSRVHERLVN--MPLHGAPMARLCISVGVAPWGAQFTHYREWLKAADVALYKA 355

Query: 248 KKSGRNRV 255
           K +GR R 
Sbjct: 356 KNAGRGRT 363


>gi|316931733|ref|YP_004106715.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
 gi|315599447|gb|ADU41982.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
          Length = 557

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 18/184 (9%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
           G   +EL  S +R+S ++ +D LSGL N   F S L           ++L+++  D+D+F
Sbjct: 362 GQRERELVASNSRLSVMASMDLLSGLANRRGFQSRLDFEWMKSQQTGQRLALMMIDVDHF 421

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEF----AAAALGSSEQEAAI 194
           K  ND++GHP GD  ++ + + L  V   T  F  R GGEEF      A +G + Q    
Sbjct: 422 KLFNDSYGHPEGDACLSRIGETLAAVAAETGGFAARYGGEEFCLLLPEAGIGRAIQ---- 477

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGR 252
           +   +R  +E   +   + P   +T+S G+A     E  S   +I  AD ALY AK  GR
Sbjct: 478 VGEMVRTTVEQLTLPHRTSPFERVTVSIGVACTLPSEQASPAELIEAADAALYAAKHRGR 537

Query: 253 NRVV 256
           N VV
Sbjct: 538 NNVV 541


>gi|256396884|ref|YP_003118448.1| diguanylate cyclase [Catenulispora acidiphila DSM 44928]
 gi|256363110|gb|ACU76607.1| diguanylate cyclase [Catenulispora acidiphila DSM 44928]
          Length = 592

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 83/159 (52%), Gaps = 12/159 (7%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N +     L        +  E ++++F D+D FK +ND+ GH  GD+V+   +
Sbjct: 417 DPLTGLANRALLTDRLEHALTQRQAEWEPVAVIFLDLDGFKGVNDSVGHETGDRVLVEAA 476

Query: 160 DQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLR-KIIENSQINISSGPSIH 217
            ++         V R GG+EF     +G++   A ++A  +R ++ E  +I    GP+ H
Sbjct: 477 GRISGSLRVGDTVARFGGDEFVIVLEVGTTVGGALVVAERIRGRLCEEYRIE---GPAHH 533

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  S G+A        S ++ RAD A+Y AK +GRNRVV
Sbjct: 534 LGASIGVAFSEPGGSASNLLRRADAAMYRAKTAGRNRVV 572


>gi|251800195|ref|YP_003014926.1| diguanylate cyclase with GAF sensor [Paenibacillus sp. JDR-2]
 gi|247547821|gb|ACT04840.1| diguanylate cyclase with GAF sensor [Paenibacillus sp. JDR-2]
          Length = 361

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 11/163 (6%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           QL+  D L+GLLN   F       I+  G       + + D++ FKQ ND  GH VGD V
Sbjct: 195 QLTERDILTGLLNRRGFSVRIQGWINRAGREEGFFGVFYLDLNKFKQCNDTHGHEVGDLV 254

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-NSQINISSG 213
           +   ++++    G    V RLGG+EF  AA    + +    AN L   +E   QI     
Sbjct: 255 LVEFANRIKNATGESALVARLGGDEFVVAAWLQKDNDLVQTANRLVSQLELPMQIKELRL 314

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           P   +T S G       +  + ++  ADQ++Y+AK +G NR+ 
Sbjct: 315 P---MTTSVGCTLWSEGKTETDLLREADQSMYLAKSNGTNRIA 354


>gi|170743553|ref|YP_001772208.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46]
 gi|168197827|gb|ACA19774.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46]
          Length = 669

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 15/173 (8%)

Query: 102 QLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +L+  D L+GL N   F ++L     G    +L++  FD+D+FK IND++GH  GD+V+A
Sbjct: 240 RLAHTDSLTGLPNRRYFFAALDGLRDGPDRAELALAIFDLDHFKSINDSYGHSAGDRVLA 299

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFA----AAALGSSEQEAAILAND-LRKIIENSQINIS 211
               +L  + G  + V RLGG+EF     A ALG          +D LR+      I +S
Sbjct: 300 ETGRRLGSLAGKAVRVARLGGDEFGALIDARALGRDVAAFCREVSDLLRQPFRAGDILLS 359

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            G S  +   A  A+R      + +   AD ALY +K+  R  V  +S  +++
Sbjct: 360 PGCSCGVAF-ASAADR----DGAALFDHADHALYQSKQHRRGAVTVYSKEQDD 407


>gi|122879102|ref|YP_200079.6| response regulator [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 494

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 12/178 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L+ +  +  ++S  + +D L+G+ N  AF   L             LS++  D+D+FK  
Sbjct: 315 LRRMHRNEAQLSTEAWVDALTGIANRRAFDDRLSRALQDAIRLEAPLSVLMIDVDHFKLY 374

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD  +  ++  +         V  R GGEEF      +    A  LA+ +R 
Sbjct: 375 NDTYGHVNGDACLRVIAGTIAACSRRSEDVAARYGGEEFGMILPHTDAAGALRLADAVRN 434

Query: 202 -IIENSQINISSGPSIHITISAGIAE-RCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
            + E   +++SS  S H+T+S G+A     + P+S   I++ AD ALY AK+ GRNR 
Sbjct: 435 AVAELGLMHLSSPTSAHVTVSIGVATFEPGEAPLSPNAIVHDADSALYRAKQKGRNRT 492


>gi|40787298|gb|AAR90215.1| hypothetical protein PDK3.074 [Rhodococcus sp. DK17]
          Length = 343

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 11/153 (7%)

Query: 107 DCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N +       A + +      +++ +  D+D FK +ND  GH VGD  +  L+
Sbjct: 187 DQLTGLPNRALVHQQIDAALDAAAGSEHRVAALLIDVDEFKSLNDRLGHAVGDDALIRLA 246

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHI 218
           +QL  V      V R+GG+EF     G++  E AI    L   I + Q+   S+G  +  
Sbjct: 247 EQLRSVVRPADTVARIGGDEFLIVCPGTASVEEAIA---LATRITDLQVGADSAGRPLRF 303

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           T S GIA    +E   T+I RAD A+Y AK +G
Sbjct: 304 TASVGIALAGPQETRQTLIRRADAAMYHAKATG 336


>gi|329895750|ref|ZP_08271141.1| hypothetical protein IMCC3088_1678 [gamma proteobacterium IMCC3088]
 gi|328922180|gb|EGG29536.1| hypothetical protein IMCC3088_1678 [gamma proteobacterium IMCC3088]
          Length = 414

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 12/167 (7%)

Query: 104 SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           SR D L+GL N   F             Y   LS++  D+D+FK  ND +GH  GD  + 
Sbjct: 245 SRSDALTGLANRRHFDEQFAREWERHYQYKATLSVIAIDVDHFKLYNDTYGHSAGDSCLT 304

Query: 157 FLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
            + + L  +         R GGEEFA     +  Q A + A ++ + IE+      + P+
Sbjct: 305 KIGETLSDIAKRFSSLAARYGGEEFALLMPSTDAQLAQVAAREILQTIEDLNCAFPASPT 364

Query: 216 IHITISAGIAERCHKEPISTI----IYRADQALYVAKKSGRNRVVCF 258
               +S  +         S +    I  AD+ALY AK+ GRN+V  +
Sbjct: 365 TKSRLSVSLGVHTTVPATSAVANSFIQEADKALYAAKRLGRNQVQVY 411


>gi|319778117|ref|YP_004134547.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171836|gb|ADV15373.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 737

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 21/188 (11%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
            L  + N I  L+  D L+GL +   F S L        +  E+L+I++ D+D FKQ+ND
Sbjct: 298 RLIETENHIYHLAHYDLLTGLHSRGHFNSRLADALTLLPATGEQLAILYLDLDRFKQVND 357

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF---AAAALGSSEQEAAILANDL-- 199
           +FGHP GD+++   +D+L  +      V RLGG+EF     A  G  E E   L   L  
Sbjct: 358 SFGHPAGDELLREFADRLRRLTLEVDTVARLGGDEFIIIQRAVAG--ENEVKTLCEHLIE 415

Query: 200 --RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             R+  E + + +  G    +++   +A R   + +  ++ +AD ALY AK  GR+    
Sbjct: 416 SARRPFEVAGVQVFVG----VSVGVALAPRDGVDQVE-LVRKADLALYHAKAGGRSGYAL 470

Query: 258 FSDIENNT 265
           F    + T
Sbjct: 471 FEPEMDQT 478


>gi|255656226|ref|ZP_05401635.1| putative signaling protein [Clostridium difficile QCD-23m63]
          Length = 391

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 107/242 (44%), Gaps = 30/242 (12%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK-ELFISYNR 99
           +VI     FLF     P  G++ I     S ++ +  I+ L  ++S  + +  +F  Y++
Sbjct: 150 SVIVFGGCFLFLNFFLP--GIQTIPGNEFSNIVNTFFITSLAVFVSTMLYRSRVFTYYDK 207

Query: 100 I---SQLSRIDCLSGLLNHSAFISSLGSYN-------------------EKLSIVFFDID 137
           +    Q   I  ++ LLN       L   N                   E ++ +  DID
Sbjct: 208 LLISQQYEEIYHINNLLNDKVMTDDLTKMNNRRYLEDILQKKLISHANQEPITGMMIDID 267

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAIL 195
           YFKQ NDN+GH  GD  +  ++ ++++ F +       R GGEEF        E++A + 
Sbjct: 268 YFKQFNDNYGHQKGDYCLQNIA-KVILDFTSSENEHAIRYGGEEFFICIFNCDEEDAKLK 326

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRN 253
           +  LRKIIE         P   +T+S G+     +  I+    I   D+ALY AK+ GRN
Sbjct: 327 SECLRKIIETCNFERDDIPLKCVTVSIGVYTNKIERTITLNEFISNCDKALYTAKEQGRN 386

Query: 254 RV 255
            V
Sbjct: 387 CV 388


>gi|206560339|ref|YP_002231103.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
 gi|198036380|emb|CAR52276.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
          Length = 466

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 9/177 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S L+EL  +  ++  ++  D ++G  N   FI+ +               ++  D+D FK
Sbjct: 289 SALQELRRTNQKLEYMAATDPMTGASNRRQFIAQVEREIVRAERDGTPFCLLALDLDNFK 348

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH +GD+V+  +  Q +        + R+GGEEF A       + A + A  +R
Sbjct: 349 NINDAYGHQIGDEVLRGVVRQCLEAIRPAGALARVGGEEFMALLPEMPLEGARMTAERVR 408

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I +S   +     + +T+S G+A+       + T++   D+ LY AK+ GRNRVV
Sbjct: 409 SSISSSPFGLDF-KRVQVTVSVGVAQYGVDGSTVDTLLRVVDERLYQAKREGRNRVV 464


>gi|253700773|ref|YP_003021962.1| diguanylate cyclase with PAS/PAC sensor [Geobacter sp. M21]
 gi|251775623|gb|ACT18204.1| diguanylate cyclase with PAS/PAC sensor [Geobacter sp. M21]
          Length = 300

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
           +  Y+    ++F D+D FK++ND FGH  GD+V++F++  L V        GR GGEEF 
Sbjct: 165 MSRYDIPFGVLFMDLDDFKRVNDVFGHETGDRVLSFVAGTLSVNSRPFDLYGRWGGEEFV 224

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                 +      +   LRK++E S + +     + +TIS G      ++ + +++ RAD
Sbjct: 225 GIVRNVTAANLKHMGQRLRKLVEKSFLLVGE-ERLRVTISIGATMALPEDTLQSLLQRAD 283

Query: 242 QALYVAKKSGRNRVV 256
             +Y +K +G+NR+ 
Sbjct: 284 LLMYQSKAAGKNRLT 298


>gi|121591234|ref|ZP_01678534.1| ggdef family protein [Vibrio cholerae 2740-80]
 gi|121546908|gb|EAX57060.1| ggdef family protein [Vibrio cholerae 2740-80]
          Length = 438

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 75/138 (54%), Gaps = 3/138 (2%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
           ++L  +  ++S L++ D L+ + N  +F   L +   +   L+++ FDID FK IND FG
Sbjct: 289 QQLEEANQKLSYLAKTDSLTDIANRRSFFEHLEAEQTRSGSLTLMVFDIDDFKTINDRFG 348

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD  I F+   +     +  +  R+GGEEFA  A G + +E+  LA  + + +   +
Sbjct: 349 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 408

Query: 208 INISSGPSIHITISAGIA 225
             +++  S+ +TIS G A
Sbjct: 409 WVVNAQHSLSLTISLGCA 426


>gi|303325687|ref|ZP_07356130.1| sensory box protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863603|gb|EFL86534.1| sensory box protein [Desulfovibrio sp. 3_1_syn3]
          Length = 468

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 94/189 (49%), Gaps = 23/189 (12%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYF 139
            I  E      R+++L+  D L+GL N      SL  Y EK        L +V  DID F
Sbjct: 10  KIYNEWQAQNRRLTELNATDYLTGLPNRR----SLEEYLEKAIARGSGNLGVVMADIDAF 65

Query: 140 KQINDNFGHPVGDKVIAFLSD--QLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAA 193
           K  ND +GH  GD+V+A ++   Q  V  G  + V RL GEEF      A   S  Q A 
Sbjct: 66  KSFNDAYGHMAGDQVLAGIARCLQDAVPKGKGL-VSRLSGEEFVIVLPDADAESINQVAE 124

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSG 251
            +  +++K  +N + +I      H+T+S G  + ER        +IY+AD AL  AKK+G
Sbjct: 125 TILRNIQK--QNLRHDIVPLTDTHVTLSMGSILWERKEPHTPRELIYQADLALSQAKKNG 182

Query: 252 RNRVVCFSD 260
           R++ V FS+
Sbjct: 183 RDQHVLFSE 191


>gi|301052276|ref|YP_003790487.1| sensory box/GGDEF family protein [Bacillus anthracis CI]
 gi|300374445|gb|ADK03349.1| sensory box, GGDEF family protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 569

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQAP- 253

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306


>gi|307727606|ref|YP_003910819.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1003]
 gi|307588131|gb|ADN61528.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1003]
          Length = 522

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 11/167 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQINDNFG 147
           S  ++  L+R D L+GL N       L             + ++++ D+D FK +ND  G
Sbjct: 334 SEAKVLYLARHDSLTGLANRRELRERLEKILVNVRSGRATQTAVLYLDLDGFKLVNDRHG 393

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+V+  ++ +L           RLGG+EFA     ++    +I+A   R I E ++
Sbjct: 394 HSAGDEVLETVAARLRQTLRHGEMAARLGGDEFAVVVEDATLP--SIVAIAQRVIREVAK 451

Query: 208 I-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
              +++G S+ I  S GIA     EP+  ++ RAD+A+Y AKK+G+ 
Sbjct: 452 PYPLAAGVSMSIGTSIGIALAQEHEPVDDLVRRADEAMYSAKKAGKG 498


>gi|262165609|ref|ZP_06033346.1| GGDEF family protein [Vibrio mimicus VM223]
 gi|262025325|gb|EEY43993.1| GGDEF family protein [Vibrio mimicus VM223]
          Length = 443

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 85/171 (49%), Gaps = 25/171 (14%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+GLLN  AF   L          N KL+++FFD+D FK+IND+ GH VGD V+
Sbjct: 269 LSERDSLTGLLNRRAFKQQLSQALIKAKRSNLKLALLFFDLDKFKEINDSKGHDVGDIVL 328

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAA------ALGSSEQEAAILANDLRKIIENSQIN 209
             ++ +L        F GRLGG+EF           G  ++   IL   L+ I  N +  
Sbjct: 329 REVAQRLKATIRESDFCGRLGGDEFVVCLDILQDHSGVRDKSYQILDKLLKPIRVNDE-- 386

Query: 210 ISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                 + + +S GIA   E+  + P   ++  AD+A+YVAK    + + C
Sbjct: 387 -----DLIVGVSIGIALYPEQGTQMP--GLLRVADEAMYVAKHQSGSMIYC 430


>gi|237802423|ref|ZP_04590884.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331025280|gb|EGI05336.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 432

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 32/220 (14%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F+ L    +   +L I+   + L+   I+ ++  E +       Q++  D L+GL    A
Sbjct: 206 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 255

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
               +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        R GG
Sbjct: 256 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAYRYGG 315

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218
           EEFA      + +E       +R+ I   +I   N  S P                S+ +
Sbjct: 316 EEFAIVFAAKTIEECLPHLEAIREAIATYEIQLRNKDSRPQDDQQGRQRRSGAQAGSVSV 375

Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256
           T+S G+AER   H+ P   ++  ADQALY AK +GRN VV
Sbjct: 376 TVSIGVAERQPEHRTP-EEVLKCADQALYAAKGAGRNCVV 414


>gi|153212272|ref|ZP_01948060.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|124116650|gb|EAY35470.1| GGDEF family protein [Vibrio cholerae 1587]
          Length = 372

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 16/180 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L+    ++  LS  D L+GL N    +  L           +    V  DID FK +N
Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDSQQPFVCVMIDIDGFKAVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH VGDKV+  +++ L   F +   V RLGG+EF      +       +A  + + I
Sbjct: 253 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETDTAGGVYIAEQVCRAI 312

Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   I++ +      ++S G+A      + H E    ++  ADQA+Y+AK  G+NRV  F
Sbjct: 313 QQQVISLENNIRWQGSVSMGVAAFASNMKEHHE----LLRAADQAVYLAKNRGKNRVCAF 368


>gi|110641208|ref|YP_668938.1| hypothetical protein ECP_1024 [Escherichia coli 536]
 gi|300982668|ref|ZP_07176252.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1]
 gi|110342800|gb|ABG69037.1| hypothetical protein YcdT [Escherichia coli 536]
 gi|300307133|gb|EFJ61653.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1]
 gi|324013302|gb|EGB82521.1| diguanylate cyclase domain protein [Escherichia coli MS 60-1]
          Length = 455

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 13/160 (8%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216
           +         + R+GGEEF         + A  LA  +R+ +E     N +  I     +
Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTEIDTECAKALAERIRENVERLTGDNPEYAIPQ--KV 402

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            I+I A + ++    P   I   AD ALY AK++GRN+VV
Sbjct: 403 TISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 441


>gi|108798585|ref|YP_638782.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. MCS]
 gi|119867685|ref|YP_937637.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. KMS]
 gi|126434184|ref|YP_001069875.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. JLS]
 gi|108769004|gb|ABG07726.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. MCS]
 gi|119693774|gb|ABL90847.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. KMS]
 gi|126233984|gb|ABN97384.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. JLS]
          Length = 781

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 22/228 (9%)

Query: 49  FLFYIGLTPFYGL---EYILVENLSLVIISITISLLLGYISGSIL---------KELFIS 96
           FL YIG     GL     ++  ++  ++I++ + ++    +  ++          +L+ +
Sbjct: 293 FLPYIGFLCIIGLLSYHLLIGRDMPKLVIAVAVVMIALVTARQVVAMRAQRLVTNQLYEA 352

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
             R++     D L+GL N   F   L    ++ K  ++F DID FK++ND FGH  GD +
Sbjct: 353 QRRLAHQVHHDPLTGLPNRVLFAKRLDEAMHDGKFVLIFVDIDDFKEVNDQFGHAAGDDL 412

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSG 213
           +  + ++L    G    + R+GG+EF  A L   E +A  ++A+ LR  + +       G
Sbjct: 413 LCAVGERLRRCVGPSDTLARIGGDEF--AILVEGEHDAPEVVADKLRVALRDP--FAVHG 468

Query: 214 PSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCF 258
            S+ +  S G+      EP  T   ++ +AD ++Y  K+ G++  V +
Sbjct: 469 SSVRVRASMGLVRPSVDEPNPTSDDLLRQADISMYAGKRLGKDTAVVY 516


>gi|58425657|gb|AAW74694.1| response regulator [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 515

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 12/178 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L+ +  +  ++S  + +D L+G+ N  AF   L             LS++  D+D+FK  
Sbjct: 336 LRRMHRNEAQLSTEAWVDALTGIANRRAFDDRLSRALQDAIRLEAPLSVLMIDVDHFKLY 395

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD  +  ++  +         V  R GGEEF      +    A  LA+ +R 
Sbjct: 396 NDTYGHVNGDACLRVIAGTIAACSRRSEDVAARYGGEEFGMILPHTDAAGALRLADAVRN 455

Query: 202 -IIENSQINISSGPSIHITISAGIAE-RCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
            + E   +++SS  S H+T+S G+A     + P+S   I++ AD ALY AK+ GRNR 
Sbjct: 456 AVAELGLMHLSSPTSAHVTVSIGVATFEPGEAPLSPNAIVHDADSALYRAKQKGRNRT 513


>gi|331646285|ref|ZP_08347388.1| inner membrane protein YcdT [Escherichia coli M605]
 gi|330910840|gb|EGH39350.1| sensory box/GGDEF domain protein [Escherichia coli AA86]
 gi|331045037|gb|EGI17164.1| inner membrane protein YcdT [Escherichia coli M605]
          Length = 455

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 13/160 (8%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216
           +         + R+GGEEF         + A  LA  +R+ +E     N +  I     +
Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTEIDTECAKALAERIRENVERLTGDNPEYAIPQ--KV 402

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            I+I A + ++    P   I   AD ALY AK++GRN+VV
Sbjct: 403 TISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 441


>gi|262173521|ref|ZP_06041198.1| GGDEF family protein [Vibrio mimicus MB-451]
 gi|261890879|gb|EEY36866.1| GGDEF family protein [Vibrio mimicus MB-451]
          Length = 696

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 13/178 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQIND 144
           +EL     +++Q +R D L+ L N  A+   +  Y       + +++   D+D FK +ND
Sbjct: 521 QELQNVNRKLAQAARTDSLTQLYNRRAYEEFIQEYWQTYQAQQPITLAVMDLDGFKLVND 580

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GH VGD+++   +D L  +F  P   + RLGG+EFA    G  +Q    L   +  I 
Sbjct: 581 QLGHQVGDELLRLFADLLRDIFDRPTDRLTRLGGDEFAVIMSGFEQQSHLNLLAQV--IT 638

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRVVCFS 259
           E SQ    S    H+++S G A       ++T  +   ADQALY AK +G+ ++V FS
Sbjct: 639 EFSQRTAQSFN--HLSVSIGAASIIPTPAMTTDSFFSLADQALYQAKANGKQQLVVFS 694


>gi|228474320|ref|ZP_04059055.1| ggdef domain protein [Staphylococcus hominis SK119]
 gi|228271679|gb|EEK13026.1| ggdef domain protein [Staphylococcus hominis SK119]
          Length = 356

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 12/201 (5%)

Query: 68  NLSLVIISITISLLLGYISGSILKEL---FISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           +L+ +II I IS +L   S     ++   F    R     + D L+GL N   F   L  
Sbjct: 149 DLTELIILIPISFVLTITSAVTFVDIWHFFSLVTRYENEDKYDYLTGLGNVKEFDRHLNK 208

Query: 125 YNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
            ++K       L+++  DID FK +ND + H  GD V+  +S  L         + R GG
Sbjct: 209 ISQKAEIEHTSLALLLVDIDGFKDVNDTYTHKAGDAVLKQMSQLLKNYVPHQFKIFRNGG 268

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--T 235
           EEF+      S  ++  LA ++R  +E S  ++ +   I +++S G+      E  S   
Sbjct: 269 EEFSIVIFDYSLDQSVKLAENIRMAVEKSSFHLPNKEVIKLSVSIGVGYLSPDEYKSQRK 328

Query: 236 IIYRADQALYVAKKSGRNRVV 256
           +   AD  ++VAKK GRN+V+
Sbjct: 329 VFKDADDMVHVAKKEGRNQVM 349


>gi|218245788|ref|YP_002371159.1| diguanylate cyclase [Cyanothece sp. PCC 8801]
 gi|218166266|gb|ACK65003.1| diguanylate cyclase [Cyanothece sp. PCC 8801]
          Length = 494

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 80/169 (47%), Gaps = 17/169 (10%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      SL    E+       L I+  D+D+FK +ND FGH  GD+V+  L 
Sbjct: 328 DALTGLYNRRYLEESLKKELERAKRKERSLGIIMIDVDHFKNVNDTFGHDKGDQVLKKLG 387

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L           R GGEE       +S +     A  LR+ ++N  +++       +T
Sbjct: 388 GFLQRHIRGSDIACRYGGEELTLILPEASLENTRQRAEQLRQAVKNLDLDLCDHT---LT 444

Query: 220 ISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVCFS--DIEN 263
           IS GIA  C   H      ++  ADQALY AK+ GR+ V+C    DIE+
Sbjct: 445 ISVGIA--CFPEHGYSGKALLKTADQALYQAKQQGRDCVICPPILDIED 491


>gi|156933995|ref|YP_001437911.1| hypothetical protein ESA_01821 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532249|gb|ABU77075.1| hypothetical protein ESA_01821 [Cronobacter sakazakii ATCC BAA-894]
          Length = 352

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 11/194 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSL 122
           +L +IS+ + L L  +S ++   L      + + +  D L  + N         A +   
Sbjct: 159 TLPLISVYV-LALSMVSHALSARLREKTRELERFANTDPLLNIANRRRLEHDIDAALQRF 217

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
               +  +++F DID FK  ND +GH  GD+++   SD L         V R GG+EF  
Sbjct: 218 HQSEQPAALMFIDIDDFKAANDRYGHEAGDQLLVTFSDILRAATRGGDTVARFGGDEFVV 277

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRAD 241
               +S   A  +A+  R + + +Q+++   P++  T+S GIA    +    S  +  AD
Sbjct: 278 LLPDTSFGRACAVAD--RIMAQTAQMDVFPKPALRCTLSIGIARATAEMREASQWLKAAD 335

Query: 242 QALYVAKKSGRNRV 255
           +ALY AK+ G+NR+
Sbjct: 336 EALYSAKREGKNRI 349


>gi|124268236|ref|YP_001022240.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylibium petroleiphilum PM1]
 gi|124261011|gb|ABM96005.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylibium petroleiphilum PM1]
          Length = 778

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 17/184 (9%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           ++E   +  RI  L+  D L+GL N +AF        +S  S + +++++F D+D+FK+I
Sbjct: 340 IRERVAAQARIHHLAHHDALTGLPNRAAFGLQLERLTASHRSGDAQIALLFIDLDHFKRI 399

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-----EQEAAILAN 197
           ND+ GH VGD ++  ++ ++         V R GG+EF     G +     EQ A  L  
Sbjct: 400 NDSLGHLVGDLLLQTVTARITDNLRADDLVARFGGDEFMVLIPGVTDRSVVEQVAGKLLA 459

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +   +E +  +IS  PSI +++        H    + +I  AD A+Y+AK  GR  V  
Sbjct: 460 VIEAPLEAAGRSISVSPSIGVSLFPE-----HGRTPAELIQHADAAMYMAKARGRANVQF 514

Query: 258 FSDI 261
           F  +
Sbjct: 515 FDPV 518


>gi|58582237|ref|YP_201253.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84624130|ref|YP_451502.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188576798|ref|YP_001913727.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188576990|ref|YP_001913919.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|58426831|gb|AAW75868.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368070|dbj|BAE69228.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188521250|gb|ACD59195.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188521442|gb|ACD59387.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 990

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 79/156 (50%), Gaps = 10/156 (6%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN +  +++L             L++V  D+D+FK +ND  GH  GD V+A + 
Sbjct: 816 DELTGLLNRAGILAALREMLLHAARSGRPLAVVLIDLDHFKLVNDQHGHLAGDAVLAGVG 875

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            ++  +      +GR GGEE  A   G +      L    R I  +  ++      +H+T
Sbjct: 876 HRMDTLVRGDDRIGRYGGEELLALLPGLTPGATHRLDAMHRGICGDYPVDDG---WLHVT 932

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+A     E +  ++ RAD ALY AK+SGRNR+
Sbjct: 933 CSIGVAWFQAGETLEQLLARADAALYRAKRSGRNRI 968


>gi|85710890|ref|ZP_01041951.1| GGDEF domain protein [Idiomarina baltica OS145]
 gi|85695294|gb|EAQ33231.1| GGDEF domain protein [Idiomarina baltica OS145]
          Length = 343

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 8/162 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++L+  D L+G+ N     + L         +   +S    DIDYFK++ND +GH  GD+
Sbjct: 175 TELAVTDTLTGVYNRKQLQTDLEHLVALKKRHGRPISAALCDIDYFKEVNDKYGHFDGDR 234

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++   +  +   F     V R+GGEEF      +  + A   A  LR     +   +   
Sbjct: 235 LLIQAAQLIKSSFRASDKVFRVGGEEFVILMPDTDLEGATRAAEKLRATFSANHFELKED 294

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           P +++TIS G++E   +E     + RAD+ LY AK  GRN+V
Sbjct: 295 P-VNMTISIGVSELESEENWLAWLERADKLLYHAKDMGRNQV 335


>gi|116051699|ref|YP_789462.1| two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|313109108|ref|ZP_07795080.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|115586920|gb|ABJ12935.1| probable two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310881582|gb|EFQ40176.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 347

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L   D L+GL N   F   L            +LS++  D+DYFK  ND FGH  GD
Sbjct: 167 LQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGD 226

Query: 153 KVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  ++  +      +     R GGEEFA    G+S   A +LA  +R+ +E+ QI + 
Sbjct: 227 EALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHD 286

Query: 211 SSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              P  ++T+S G++        +    +I  ADQALY AK +GRN+V
Sbjct: 287 QPRPGSYLTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGRNQV 334


>gi|330969162|gb|EGH69228.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 628

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 21/167 (12%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N +  ++ L        S  E+ +++F D+D FK +ND+ GH  GD+++  ++
Sbjct: 200 DELTSLFNRAYLMNELTTAFETRKSRYERATVLFLDLDGFKVVNDSMGHLAGDQLLKGVA 259

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINIS---SGP 214
           ++L     +   + R+GG+EFA   +G  + E A+      K+ E   SQ+N +    G 
Sbjct: 260 NRLQTCVRSNDVLARIGGDEFAILLMGKDQPETAV------KMAERIVSQLNTAIQIEGQ 313

Query: 215 SIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I I+ S GI  A   H +P   ++  AD A+Y AKK GR R   F+
Sbjct: 314 DIFISCSIGIVSAGESHTKP-EELLRDADVAMYSAKKQGRGRWSIFN 359


>gi|281178141|dbj|BAI54471.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 496

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 13/160 (8%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 326 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 385

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216
           +         + R+GGEEF         + A  LA  +R+ +E     N +  I     +
Sbjct: 386 IGKSIRPDDLLARVGGEEFGVLLTEIDTECAKALAERIRENVERLTGDNPEYAIPQ--KV 443

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            I+I A + ++    P   I   AD ALY AK++GRN+VV
Sbjct: 444 TISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 482


>gi|256059197|ref|ZP_05449403.1| response regulator PleD [Brucella neotomae 5K33]
 gi|261323146|ref|ZP_05962343.1| response regulator receiver modulated diguanylate cyclase [Brucella
           neotomae 5K33]
 gi|261299126|gb|EEY02623.1| response regulator receiver modulated diguanylate cyclase [Brucella
           neotomae 5K33]
          Length = 461

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 9/170 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S  R    S  D L+GL N           ++      + LSI+  D+D+FKQ+N+ +GH
Sbjct: 288 SMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQYGH 347

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+   S +L         + R GGEEF      +  Q A  +A  +R I+  +  
Sbjct: 348 GAGDHVLREFSGRLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRDIVAEAPF 407

Query: 209 NISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  G     +T+S G+A  R   + +  +  RA  AL  AK+SGRNR+V
Sbjct: 408 VLDDGKRRASLTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIV 457


>gi|239995196|ref|ZP_04715720.1| GGDEF protein [Alteromonas macleodii ATCC 27126]
          Length = 961

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/159 (33%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N  AF   L  Y E+       L +   DID+FKQ+ND + H VGDKVI  ++
Sbjct: 803 DDLTGIANRRAFDRWLVQYFEEAKAKQSPLCLAVIDIDHFKQVNDQYSHLVGDKVITEVA 862

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L           R GGEEF           A +  + +RKI+     +  +  ++ +T
Sbjct: 863 RILNREVPHYAKCARWGGEEFTVLLPEYDLVNARVAMDHVRKIVAAHDFSFIA-QTLKVT 921

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IS G+A          ++  ADQALY AK++GRN+V  F
Sbjct: 922 ISIGVASADGARDHDRMLTHADQALYTAKENGRNQVTIF 960


>gi|146305544|ref|YP_001186009.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas mendocina ymp]
 gi|145573745|gb|ABP83277.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas mendocina ymp]
          Length = 557

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 9/169 (5%)

Query: 97  YNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           + ++ + +  D L+GL N        S  ++     N  L++   D+D+FK++ND  GH 
Sbjct: 378 HEQLREQALCDPLTGLYNRRYLDEFFSRELARAQRENLPLALALIDLDHFKRLNDECGHL 437

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD V+  ++  L+    +   V R+GGEEF     G    EA     ++   +    I 
Sbjct: 438 VGDDVLKAVAKHLLDNLRSTDAVFRIGGEEFLLILPGVDPVEACERLQNICSQLAGQSIA 497

Query: 210 ISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVC 257
              G    +T+SAG+A    +  +   +++ AD ALY AK+ GRNRV C
Sbjct: 498 TRGGDQ-QVTLSAGLAHWPQQGVVLEELLHAADAALYQAKRGGRNRVCC 545


>gi|330976496|gb|EGH76547.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 332

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 2/129 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+ +  DID FK +ND +GH  GD V+  +++            GR+GGEEFAA   G +
Sbjct: 203 LAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCA 262

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVA 247
              A  +A  L++ I+      S G +  IT S G+      +P + T+  RAD A+Y A
Sbjct: 263 PDMAMQIAERLQREIQRQNFQ-SGGTTFSITASQGLTNLGADDPSLETLHGRADAAMYQA 321

Query: 248 KKSGRNRVV 256
           K+ G+N++V
Sbjct: 322 KRQGKNQIV 330


>gi|329907280|ref|ZP_08274598.1| hypothetical protein IMCC9480_3196 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547045|gb|EGF31931.1| hypothetical protein IMCC9480_3196 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 359

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 87/191 (45%), Gaps = 30/191 (15%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFI--------------SSLGSYNEKLS-------- 130
           ++ +Y  +   S  D L+GLLN   F               S+L S  E+          
Sbjct: 150 VYRNYQNLLDYSERDSLTGLLNRRTFDEKFSRMVACSTPADSTLASTTERRHPNDIEGQW 209

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +   DID+FK++ND FGH  GD+V+  +++ L   F T   V R GGEEF       S  
Sbjct: 210 LAVVDIDHFKRVNDQFGHLYGDEVLILVANLLRSSFRTQDRVFRFGGEEFVILLRSVSLA 269

Query: 191 EAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           +A      LR  IE         P +  IT+S G        P+  I+  ADQALY AK 
Sbjct: 270 DARTAFERLRANIEEHHF-----PQLGTITVSIGFVSISSSTPV-VILGHADQALYFAKS 323

Query: 250 SGRNRVVCFSD 260
           +GRN+ VCF D
Sbjct: 324 NGRNQ-VCFYD 333


>gi|320195645|gb|EFW70270.1| hypothetical protein EcoM_02071 [Escherichia coli WV_060327]
          Length = 410

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 316 RTLESCARKGDLVFRWGGEEFVFLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409


>gi|256821596|ref|YP_003145559.1| diguanylate cyclase [Kangiella koreensis DSM 16069]
 gi|256795135|gb|ACV25791.1| diguanylate cyclase [Kangiella koreensis DSM 16069]
          Length = 602

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 11/167 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVF--FDIDYFKQINDNFGHPVG 151
           R+ + S+ D L+GL +   F  +       S  EK  + F  FD+DYFK +ND +GH VG
Sbjct: 424 RLRKQSQTDQLTGLSSRHHFYETAKAILHRSEQEKQDVGFILFDMDYFKSVNDKYGHLVG 483

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+   ++ +          GRLGGEEFA      + ++A  LA   R+ +  SQI+ S
Sbjct: 484 DWVLQKTAEVVKASCRQNDLAGRLGGEEFAIFLPACNLEKAKQLAEICRRAV--SQIDTS 541

Query: 212 -SGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +G    ++ S G+ +       +  +I   D+A+Y AKK+GRN++V
Sbjct: 542 ETGYRFDVSSSFGVTSTELSGFDLMDLIADTDKAMYSAKKNGRNQIV 588


>gi|229491557|ref|ZP_04385378.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodococcus erythropolis SK121]
 gi|229321238|gb|EEN87038.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodococcus erythropolis SK121]
          Length = 775

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 9/186 (4%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIV-F 133
           +LG+   GS + E ++    I +L+  D L+GL N  AF  +L         EK  +V  
Sbjct: 323 ILGWRGVGSDITERYVHEQEILRLAATDSLTGLPNRRAFGVALEEAIDSRAPEKQVLVGI 382

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK +ND  GHP+GD+++  ++ +L  V G+ M   R+GG+EF      SS  +  
Sbjct: 383 LDLDNFKSVNDTLGHPIGDQLLLEVTKRLRDVIGSDM-CSRMGGDEFGLIVCTSSRDDPG 441

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           ++ +   +++        +   +  TI    A     +    ++  AD ALY AK +GRN
Sbjct: 442 VIFDRYLEVLHEPFFVEGNRIEVRATIGYSSAPEDSTD-ADGLVMLADLALYEAKSTGRN 500

Query: 254 RVVCFS 259
           RV  FS
Sbjct: 501 RVGKFS 506


>gi|226941568|ref|YP_002796642.1| Diguanylate cyclase [Laribacter hongkongensis HLHK9]
 gi|226716495|gb|ACO75633.1| Diguanylate cyclase [Laribacter hongkongensis HLHK9]
          Length = 347

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 11/180 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEK---LSIVFFDIDYFKQIND 144
           EL ++  ++ Q++  D L+G+ +   F      +L    ++   LS +  DID+FK++ND
Sbjct: 166 ELEMANAQLRQMAMYDSLTGVYSRGVFFELASEALALTRQECAPLSALMLDIDFFKKVND 225

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+     +L         +GR GGEEFA          A  +A  L   + 
Sbjct: 226 TWGHAAGDQVLRLAGRRLREQLRGSDIIGRCGGEEFAVILPRQQADRACAVAQQLCDAMC 285

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN--RVVCFSDI 261
                   G  I  +IS G+AE   + E I  +++RAD AL  AK  GRN  R+   SD+
Sbjct: 286 TRPFPW-EGQQIACSISIGVAELSREDESIEKLLHRADLALLQAKGDGRNCYRLASGSDL 344


>gi|168213938|ref|ZP_02639563.1| GGDEF domain protein [Clostridium perfringens CPE str. F4969]
 gi|170714563|gb|EDT26745.1| GGDEF domain protein [Clostridium perfringens CPE str. F4969]
          Length = 545

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 5/167 (2%)

Query: 99  RISQLSRI-DCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           R S+L  + D L  + N     ++I++L   +  +S +  D+DYFK  NDN+GH  GD +
Sbjct: 372 RDSKLDSLKDGLCNIYNRRFLDSYINNLKEKDLPISFLMIDVDYFKLYNDNYGHQAGDFI 431

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213
           +  ++  L         V R GGEEF     G+S+  +   A  +++ ++N  I    S 
Sbjct: 432 LKSIASVLEKNSRKEDIVARYGGEEFCVLLKGASKYSSINYAKRIKENLDNLNIKHKYSK 491

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            S H+T S GI     K  +   I  +D+ALY++K  GRN      D
Sbjct: 492 TSDHVTFSIGIYTTYTKNDLKNAIKFSDKALYISKTRGRNTYTYLED 538


>gi|172062630|ref|YP_001810281.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
 gi|171995147|gb|ACB66065.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
          Length = 510

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 12/186 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           L+   I+ +++ +L+  D L+GL N   F + L    ++       LS++F D+D+FK  
Sbjct: 326 LRRRQIAESKLYRLAHTDSLTGLDNRGTFDAVLAKEAQRASRSGRPLSVLFVDVDHFKAF 385

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD V+  ++             V R GGEEF      +  + AA +A  +R+
Sbjct: 386 NDYYGHLAGDDVLRRVAQSASRCLRRDSDHVARYGGEEFVVTLPDTDARGAATVAEAIRR 445

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            I    I     P  H+T S G A     +   + ++ +AD+ALY AK  GRNRV   SD
Sbjct: 446 AIAALDIAHGRSPYGHVTTSIGTATATGGRVNAAALLRQADEALYRAKSGGRNRV---SD 502

Query: 261 IENNTC 266
            E +T 
Sbjct: 503 AEASTA 508


>gi|17232666|ref|NP_489214.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134312|dbj|BAB76873.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 601

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 8/166 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+ ID L+ + N       L  Y        + LS     +D  KQIN N+GH +G
Sbjct: 434 RLGNLAEIDTLTLVANRRKSTQELNHYLQWCHTHQQTLSFAVVKLDGLKQINYNYGHEIG 493

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V++ L + L  +F +   VGR GG EF     G ++ E      +L K     +   +
Sbjct: 494 DRVLSQLGELLRQMFHSQDVVGRWGGTEFILGMAGITKGEGVRRLGELLKTFRQIEFINT 553

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S  S H T+SA + E         ++Y+ AD  L+ +K +GRNRV+
Sbjct: 554 SNQSFHATLSAAVVEYPQDGDKLEVLYQAADIVLHQSKATGRNRVL 599


>gi|89094506|ref|ZP_01167445.1| hypothetical protein MED92_09101 [Oceanospirillum sp. MED92]
 gi|89081242|gb|EAR60475.1| hypothetical protein MED92_09101 [Oceanospirillum sp. MED92]
          Length = 229

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 81/191 (42%), Gaps = 19/191 (9%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKL-- 129
           T+++ L Y + S  KE    Y    +LS  D L+ L N   F  +L          KL  
Sbjct: 45  TMAVSLAYFAYSRWKEAMGFYRTAHRLSIRDSLTDLYNRRYFTETLQQEISNCNRSKLPF 104

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  D+D FK+IND  GH  GD V+   S  L           R GGEEF      +  
Sbjct: 105 TLILIDLDDFKRINDTMGHETGDDVLVGFSQVLSKELRKSDTAARWGGEEFIILCRNTDN 164

Query: 190 QEAAILA----NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
             A ++A    N LRK I             H+T + GI      E +  II +AD  LY
Sbjct: 165 PSAQMIADKLLNALRKKI--------YPKDTHVTATMGITTSFGNETMEIIIKKADDCLY 216

Query: 246 VAKKSGRNRVV 256
             K  G+N+ V
Sbjct: 217 TGKSRGKNQAV 227


>gi|103488206|ref|YP_617767.1| diguanylate cyclase/phosphodiesterase [Sphingopyxis alaskensis
           RB2256]
 gi|98978283|gb|ABF54434.1| diguanylate cyclase/phosphodiesterase [Sphingopyxis alaskensis
           RB2256]
          Length = 543

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 113/251 (45%), Gaps = 43/251 (17%)

Query: 37  IFIATVIFIA---NIF------LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           +  AT++FI    N+       L  IG  P   L   LV N++L+        L G+   
Sbjct: 24  VVAATLLFIGTGGNVMQAVVRALIGIGGGPDRVLATALVLNIALI--------LFGWRRY 75

Query: 88  SIL----KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136
           + L    +E   +  R   L+  D L+G LN  A        I+   +   ++++   D+
Sbjct: 76  NDLNREIRERTEAEQRARYLADTDPLTGFLNRRALLVKGQRMIAEAVAEKREVALFLLDL 135

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA------AALGSSEQ 190
           D+FK +ND  GH  GD+V+   ++++  V        RLGG+EF A      +A G  + 
Sbjct: 136 DHFKTVNDIHGHAAGDRVLQVAAERIAAVLPPNATKARLGGDEFVAMMAFDPSARGDIDA 195

Query: 191 EAA--ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
            AA  + A D R + +  QI I +   I +    G++       + T++ +AD A+Y  K
Sbjct: 196 LAAELVTALDNRIMHDAQQIRIGASLGIALASDGGVS-------MDTMVRQADIAMYHGK 248

Query: 249 KSGRNRVVCFS 259
             GRNR V F 
Sbjct: 249 DEGRNRHVWFE 259


>gi|260893471|ref|YP_003239568.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Ammonifex
           degensii KC4]
 gi|260865612|gb|ACX52718.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Ammonifex
           degensii KC4]
          Length = 673

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 1/134 (0%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID F+ +NDN+G+  GD+++   +  L         + R+ G++F        E
Sbjct: 273 ALLVIDIDNFQLVNDNWGYKAGDRLLQAFARFLQENIREEDIIARVAGDKFMVLMEDVFE 332

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           +EA  LA +LR+ +E     +  G    IT+SAGI+     E   T++ +AD AL  AK+
Sbjct: 333 EEACKLAEELRRRVEEGSFELD-GQRCRITVSAGISMVKGDEAAETVMSQADLALRRAKE 391

Query: 250 SGRNRVVCFSDIEN 263
            GRNRVV F   E 
Sbjct: 392 EGRNRVVLFRPEEE 405


>gi|261210900|ref|ZP_05925190.1| GGDEF family protein [Vibrio sp. RC341]
 gi|260839875|gb|EEX66475.1| GGDEF family protein [Vibrio sp. RC341]
          Length = 358

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 108/227 (47%), Gaps = 17/227 (7%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF--- 94
            +ATV+ +  + L Y+    F  L  + V   S +++    S +   I G++L  LF   
Sbjct: 134 LLATVLAVMMVML-YVPFIAFQTLPLMSVFRASAIVVQSLFSFI---ILGTMLT-LFLFE 188

Query: 95  -ISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIV-FFDIDYFKQINDNFGHP 149
            I ++R+  +   D L+G  N   F   + +    +E  S++   DID+FKQIND++GH 
Sbjct: 189 EIEWHRLRSIR--DELTGAFNRRYFKEQVQNKLRTSESASVIALVDIDHFKQINDSYGHD 246

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD VI F+   L  +      V R GGEEFA  A  S   +     + +R  I      
Sbjct: 247 VGDAVITFVVRHLEALDLAECLVARYGGEEFAIFACESDMVKVHHALDKVRNAIAAGFTF 306

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                 + ++I A + +R         + +AD ALY AK+ GRNRV+
Sbjct: 307 EKQAIEVSVSIGAVLLDR--PSEYGETLRQADVALYQAKQEGRNRVM 351


>gi|256829253|ref|YP_003157981.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
 gi|256578429|gb|ACU89565.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
          Length = 339

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 10/173 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           +EL  + +R+S+LS  D L+G+ N   F ++L     +       L+++  DID+FK+ N
Sbjct: 157 RELEEANHRLSELSLTDGLTGIANRRRFDAALAEEWSRSARTGSTLALIMLDIDHFKKYN 216

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D++GH  GD  +  +++ L          V R GGEEF      ++   A  +A  LR+ 
Sbjct: 217 DHYGHQQGDDCLRRVAEVLRSSARRQGDLVSRYGGEEFCMILPDTALPGAFEIAERLRRE 276

Query: 203 IENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRN 253
           +EN  +         +T S G+A    C     + ++ RAD++LY AK  GRN
Sbjct: 277 VENMDMPHVLSDVGRVTASMGVAASMPCKAMSPAELLRRADESLYQAKSEGRN 329


>gi|152972850|ref|YP_001337996.1| hypothetical protein KPN_04370 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150957699|gb|ABR79729.1| hypothetical protein KPN_04370 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 510

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 21/175 (12%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           K+  +SY R +    ID L+G  N  AF   I++L + ++  ++   DID FK IND +G
Sbjct: 346 KQRELSYVRQAT---IDALTGCKNRRAFDSDIAALMNDHQPFALALVDIDNFKSINDTWG 402

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVG--RLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           H  GD V+  ++ + + V   P+ +   R GGEEFA           A   ++ R ++E 
Sbjct: 403 HLNGDIVLRNVAREGLQVL-QPLEISLYRYGGEEFAVVF-------PAEHIDNARTLLET 454

Query: 206 SQINISSG----PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +IN+         + +T SAG+ E  + EP+  ++   D+ALY AK+ G+NR++
Sbjct: 455 WRINVERRTWREDGLTVTFSAGLGE-WNMEPLDKLVVSVDEALYKAKQQGKNRIL 508


>gi|84622981|ref|YP_450353.1| response regulator [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84366921|dbj|BAE68079.1| response regulator [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 502

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 12/178 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L+ +  +  ++S  + +D L+G+ N  AF   L             LS++  D+D+FK  
Sbjct: 323 LRRMHRNEAQLSTEAWVDALTGIANRRAFDDRLSRALQDAIRLEAPLSVLMIDVDHFKLY 382

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD  +  ++  +         V  R GGEEF      +    A  LA+ +R 
Sbjct: 383 NDTYGHVNGDACLRVIAGTIAACSRRSEDVAARYGGEEFGMILPHTDAAGALRLADAVRN 442

Query: 202 -IIENSQINISSGPSIHITISAGIAE-RCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
            + E   +++SS  S H+T+S G+A     + P+S   I++ AD ALY AK+ GRNR 
Sbjct: 443 AVAELGLMHLSSPTSAHVTVSIGVATFEPGEAPLSPNAIVHDADSALYRAKQKGRNRT 500


>gi|317407210|gb|EFV87196.1| diguanylate cyclase [Achromobacter xylosoxidans C54]
          Length = 490

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/155 (38%), Positives = 85/155 (54%), Gaps = 10/155 (6%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL N       +  L +     ++V  DID+FK++ND +GH VGDKVI  ++ QL+
Sbjct: 336 DPLTGLRNRRGTQDAVDHLQAAGTPFAVVALDIDHFKRVNDTYGHTVGDKVIQDVA-QLM 394

Query: 164 VVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                P   + R GGEEF     G +  EA I+A  LR+     +I++  G    IT+SA
Sbjct: 395 RDCSRPSDILCRNGGEEFLILLPGVAPTEAVIVAERLRQRTAEREIDLVGG----ITVSA 450

Query: 223 GIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
           G+A+     P +    + AD ALY AK+ GRNRVV
Sbjct: 451 GVAQWPTNGPEVLQAFHAADAALYAAKQQGRNRVV 485


>gi|332140687|ref|YP_004426425.1| GGDEF protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550709|gb|AEA97427.1| GGDEF protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 946

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/159 (33%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N  AF   L  Y E+       L +   DID+FKQ+ND + H VGDKVI  ++
Sbjct: 789 DDLTGIANRRAFDRWLVQYFEEAKAKQTPLCLAVIDIDHFKQVNDQYSHLVGDKVITEVA 848

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L           R GGEEF           A +  + +RKI+     +  +  ++ +T
Sbjct: 849 RILNREVPHYAKCARWGGEEFTVLLPEYDLINARVAMDHVRKIVAAHDFSFIA-QTLKVT 907

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IS G+A          ++  ADQALY AK++GRN+V  F
Sbjct: 908 ISIGVASADGARDHDRMLTHADQALYTAKENGRNQVTIF 946


>gi|300935449|ref|ZP_07150444.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
 gi|300459331|gb|EFK22824.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
          Length = 374

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 220 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 279

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 280 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 335

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 336 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 373


>gi|153832797|ref|ZP_01985464.1| ggdef family protein [Vibrio harveyi HY01]
 gi|148870931|gb|EDL69821.1| ggdef family protein [Vibrio harveyi HY01]
          Length = 409

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 138/309 (44%), Gaps = 66/309 (21%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIF---------------FSIFIATVIFIAN----- 47
           FL+++L +++  +S +  T+++  S+F               F  +   ++FI       
Sbjct: 101 FLAVFLFNKEGFDSKATLTYVLMLSMFVFWSYVTLTYYVEGGFEEWTNGILFIVPTVSKL 160

Query: 48  ---IFLFYIGLTPFYGLEYILVENLSLVIISITISLLL-----------GYISGSI--LK 91
              + L+ IG+  F G   ILV   + +I ++T S ++            YIS ++  L 
Sbjct: 161 PLVLVLYCIGIVCFLG---ILVLKKNKIIHAMTYSAMVLASATFIFFDVQYISSTMFTLT 217

Query: 92  ELFI---SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
            L I   S +   QL+  D L+ + +  A    L     K +I   D+D+FK+ ND +GH
Sbjct: 218 GLLIIIYSTSASHQLAFTDSLTLIPSRRALDLDLKHMGRKFTIAMLDVDHFKKFNDTYGH 277

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII----- 203
             GD V+  ++ +L+   G    V R GGEEF     G   ++      ++R++I     
Sbjct: 278 DTGDDVLKMVASRLMKTQGGAK-VYRFGGEEFTIVFKGKYTEDCEAHLEEVRELIAQYEM 336

Query: 204 ----------ENSQINISSG------PSIHITISAGIAE-RCHKEPISTIIYRADQALYV 246
                     +N Q     G       ++ +T S G+A+ R  + P + +I  AD ALY 
Sbjct: 337 ILRDQDNRPDDNKQGRKKRGNADSKQKTVSVTASFGVADSRSARNP-ADVIKLADDALYK 395

Query: 247 AKKSGRNRV 255
           AKK+GRN V
Sbjct: 396 AKKAGRNCV 404


>gi|152995911|ref|YP_001340746.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150836835|gb|ABR70811.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 517

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 12/177 (6%)

Query: 85  ISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDY 138
           +  +IL  L     +I+QL   +  D L+GL N  +    L  + E     +++  DID+
Sbjct: 339 LKRAILSGLAALNQKINQLNIDTNTDPLTGLYNRRSLDQILEQWREMKQSFAVIALDIDH 398

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND FGH VGD+V+  LS  +         + R GGEEF      + +  A   A  
Sbjct: 399 FKVINDLFGHDVGDEVLKQLSQIMKETCDKNAIIFRNGGEEFLILLPSTKQSVAQFFAEK 458

Query: 199 LRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
           LR  I   ++ I+     +IT+S GI+  +    + I   + +AD ALY AK+ GRN
Sbjct: 459 LRIKIAQHEMPIAD----NITVSLGISYWDNNSNDTIKMTLKKADIALYQAKRQGRN 511


>gi|160898708|ref|YP_001564290.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Delftia acidovorans SPH-1]
 gi|160364292|gb|ABX35905.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Delftia acidovorans SPH-1]
          Length = 947

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 12/170 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFIS------SLGSYN-EKLSIVFFDIDYFKQINDNFGHPVG 151
           RI QL+  D L+ L N S  ++      S+ S+   +L++VF D+D FKQ+ND+ GHP G
Sbjct: 500 RIRQLAFYDGLTTLPNRSLLLAQAEQALSVASHEGHELAVVFIDLDRFKQVNDSLGHPAG 559

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII-ENSQINI 210
           D+++  ++ ++     T    GRL G+EF          +AA +   L+  + E   I+ 
Sbjct: 560 DRLLCSVAQRIQAELRTGDIAGRLSGDEFVIVLPHCGGAQAAEVIERLQSALGEPCMIDD 619

Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            S  S   T S GIA        + T+++RAD A+Y AK  GR     FS
Sbjct: 620 VSLAS---TASCGIAVFPADGRDMETLLHRADMAMYQAKSGGRGLYSFFS 666


>gi|110799538|ref|YP_695666.1| GGDEF domain-containing protein [Clostridium perfringens ATCC
           13124]
 gi|110674185|gb|ABG83172.1| GGDEF domain protein [Clostridium perfringens ATCC 13124]
          Length = 545

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 5/167 (2%)

Query: 99  RISQLSRI-DCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           R S+L  + D L  + N     ++I++L   +  +S +  D+DYFK  NDN+GH  GD +
Sbjct: 372 RDSKLDSLKDGLCNIYNRRFLDSYINNLKEKDLPISFLMIDVDYFKLYNDNYGHQAGDFI 431

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213
           +  ++  L         V R GGEEF     G+S+  +   A  +++ ++N  I    S 
Sbjct: 432 LKSIASVLEKNSRKEDIVARYGGEEFCVLLKGASKYSSINYAKRIKENLDNLNIKHKYSK 491

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            S H+T S GI     K  +   I  +D+ALY++K  GRN      D
Sbjct: 492 TSDHVTFSIGIYTTYTKNDLKNAIKFSDKALYISKTRGRNTYTYLED 538


>gi|152988006|ref|YP_001347170.1| hypothetical protein PSPA7_1787 [Pseudomonas aeruginosa PA7]
 gi|150963164|gb|ABR85189.1| hypothetical protein PSPA7_1787 [Pseudomonas aeruginosa PA7]
          Length = 381

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 22/177 (12%)

Query: 100 ISQLSRI----DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
           IS+L R+    D L+GL N  +F   L           + L+++  D+D+FK  ND +GH
Sbjct: 206 ISRLLRLMADHDSLTGLHNRRSFNQHLDRLWRQAQREQQTLALLLCDVDHFKAYNDRYGH 265

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
             GD V+  +   L      P+ +  RLGGEEFA    G++E EA + A  LR+ ++  +
Sbjct: 266 QAGDTVLQRIGGVLEANARRPLDMAVRLGGEEFALLLYGANEHEARLRAEALREQVQALR 325

Query: 208 I-NISSGPSIHITISAGIAERCHKEPISTIIYR-------ADQALYVAKKSGRNRVV 256
           + +  S  +  +T+S G++  C        + R       AD+ALY AK  GRN+VV
Sbjct: 326 MEHEGSQTAREVTLSIGVS--CLWPAPGNDLKRLYDLYEHADRALYEAKAFGRNQVV 380


>gi|313897542|ref|ZP_07831084.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2]
 gi|312957494|gb|EFR39120.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2]
          Length = 527

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 95/183 (51%), Gaps = 13/183 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--KLSIVFFDIDYFKQINDNFG 147
           + E ++   ++S  S  D L+GL N   F        +  ++SI++ D+DYFK +ND +G
Sbjct: 343 MTEEYLLEQQLSSNSNTDYLTGLYNRRYFYEYYADLRKFKQISILYVDLDYFKTVNDTYG 402

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF---AAAALGSSE--QEAAILANDLRKI 202
           H VGD+ +   ++ L  +F   + + RLGG+EF     A++ + E  ++   L ++L+K 
Sbjct: 403 HQVGDEALRISAEVLKKMFPKDL-IARLGGDEFLVSMTASMSAQELLRQGNRLIHELQKH 461

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            E +   ++   S+ I+ +     R     I  ++  +D ALY AK+ GR++   +    
Sbjct: 462 FERNAYYMNLSASVGISYTTDPVMR-----IDDLVRESDTALYKAKQQGRSKCQLYERAA 516

Query: 263 NNT 265
           +NT
Sbjct: 517 SNT 519


>gi|156936414|ref|YP_001440330.1| hypothetical protein ESA_04315 [Cronobacter sakazakii ATCC BAA-894]
 gi|156534668|gb|ABU79494.1| hypothetical protein ESA_04315 [Cronobacter sakazakii ATCC BAA-894]
          Length = 507

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 18/191 (9%)

Query: 89  ILKELFISYNRISQ-LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           +L++     N I Q L+ +D L+GL N   F       ++   +    +S+V  DIDYFK
Sbjct: 312 VLRDDLTRSNHILQDLALLDGLTGLPNRRQFDIYLEQCMTRAQATGAPVSLVMCDIDYFK 371

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMF----VGRLGGEEFAAAALGSSEQEAAILA 196
             ND  GH  GD+ +  + +   ++   P+     V R GGEEFA    G++   A  +A
Sbjct: 372 SYNDTLGHVAGDECLKAVGE---ILHHLPLHKSDRVARYGGEEFAIILPGANAHAAEQVA 428

Query: 197 NDLRKIIENSQINISSGPSIH--ITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRN 253
               + I+ +++   + P +   +TISAG A     +    T+  +AD+ALY AK++GRN
Sbjct: 429 MRALQAIQQARLAHPATPMVEKVLTISAGTATMTGDDASGETLKNQADEALYQAKRAGRN 488

Query: 254 RVVCFSDIENN 264
            VV  + + + 
Sbjct: 489 CVVGATGVSHT 499


>gi|154173826|ref|YP_001409181.1| response regulatory protein [Campylobacter curvus 525.92]
 gi|112803522|gb|EAU00866.1| response regulatory protein [Campylobacter curvus 525.92]
          Length = 371

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 98/209 (46%), Gaps = 12/209 (5%)

Query: 57  PFYGLEYILVENLSLVIISI-TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH 115
           P +    + + N++LV  +I  +S+    I+ S  +++     ++ ++S+ D L+GLLN 
Sbjct: 149 PHWAEMTLTITNIALVFYTILKMSIYADVITSSGYQQVHEEKEQLEKMSKYDFLTGLLNR 208

Query: 116 SAFISSLG---------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
                +L          + N  L ++  DID FK IND +GH  GDK++  ++  L+  F
Sbjct: 209 RTIEKALKYELSMLRDKNANTNLVVMLGDIDNFKMINDTYGHDWGDKILKEIAKTLLATF 268

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
               +V R GGEEF      +       + N L K I  + + +    ++ +T    +  
Sbjct: 269 RKNDYVCRWGGEEFLIILPDTKIDFIHKITNRLTKNI--NHVKLPDKTAVSMTFGMLVCI 326

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRV 255
                    II R D+ LY  K++G++R+
Sbjct: 327 NAASVNFEYIINRVDKLLYRGKQNGKDRI 355


>gi|89899270|ref|YP_521741.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Rhodoferax ferrireducens T118]
 gi|89344007|gb|ABD68210.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 1037

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/170 (32%), Positives = 88/170 (51%), Gaps = 12/170 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I QL+  D L+GL N S         +S    + ++L+I+F D+D+FK IND  GH VG
Sbjct: 606 QIQQLAHFDQLTGLPNRSQLHDRFRYALSLAQRHGDQLAIMFLDLDHFKNINDTLGHSVG 665

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQINI 210
           D+++  +S +L         + RLGG+EF     G+ E +A+ +A   L  + +  QI  
Sbjct: 666 DQLLVDVSRRLKAALREEDSLSRLGGDEFILLLPGTDEAQASQVATKLLAAVAQPCQIEQ 725

Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +   S   T+S GIA   +  +   T+   AD A+Y  K++ RN    F+
Sbjct: 726 NELVS---TVSIGIALYPNDGQDFETLSKNADAAMYRVKQASRNDFRFFT 772


>gi|289626069|ref|ZP_06459023.1| response regulator WspR [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330867548|gb|EGH02257.1| response regulator WspR [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 328

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 11/169 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L   D L+GL N   F   L            +LS++  D+DYFK  NDNFGH  GD
Sbjct: 159 LQRLMNSDGLTGLSNRRHFDEYLELEWRRAIRDQAQLSLLMIDVDYFKAYNDNFGHLEGD 218

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  ++  +      P     R GGEEFA     +S   A +LA  LR+ +    I +I
Sbjct: 219 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVSGMNIPHI 278

Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257
           +  P   +T+S G+A    +  + +  +I  AD+ LY+AK +GRN+V  
Sbjct: 279 APTPGSSLTVSIGVATVTPQVGMHSRQLILDADKGLYLAKNNGRNQVAA 327


>gi|264679214|ref|YP_003279121.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262209727|gb|ACY33825.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 387

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 105/211 (49%), Gaps = 15/211 (7%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           ++ L  F G   ILV   SLV   + I LL   ++G+   E      RI+Q++  D L+ 
Sbjct: 174 FVNLASFRG-AVILV---SLVEGVMAIMLLAMSMTGT---ERHRREERIAQIAARDPLTA 226

Query: 112 LLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           L N  A       +    S     +++  DID+FKQ+ND  GH  GD+++  LSD +  +
Sbjct: 227 LDNRRALYLRAPELLRQASPASPGALLLIDIDHFKQVNDLHGHDAGDRLLVTLSDLIRGL 286

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGI 224
                   RLGG+EF       S   A  L  +LR+   + ++   ++   + ++I A +
Sbjct: 287 LPHGAQAARLGGDEFVILLRSVSGAVAQELGQNLRESFAQQARAMFATPEPVSLSIGATL 346

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++   E +S  + RAD+ALY +K+ GR+R+
Sbjct: 347 FDQPETE-LSHWLKRADEALYASKRKGRDRM 376


>gi|239993620|ref|ZP_04714144.1| diguanylate cyclase [Alteromonas macleodii ATCC 27126]
          Length = 299

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
           +S  R+ Q++  D L+GL N + F  S+         +++  +++  D+D FK +NDNFG
Sbjct: 133 LSLMRVQQMATKDVLTGLGNRAGFEQSMTRQLGWAQRHDDPFALLVIDLDNFKYVNDNFG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GDKV+  ++  L  V        R GG+EF       S+Q+ A  A  ++  I +S 
Sbjct: 193 HGEGDKVLVHVASHLSNVLRDEDEAFRYGGDEFCCLLDCQSQQQLACAAQRIQMSINSS- 251

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
              S    + ++ S G A     + +S++  RAD ALY  K SG+N
Sbjct: 252 ---SYLSRLGVSTSLGGAIYRDGDTMSSLFDRADNALYRVKNSGKN 294


>gi|224370301|ref|YP_002604465.1| diguanylate cyclase (GGDEF) domain protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223693018|gb|ACN16301.1| diguanylate cyclase (GGDEF) domain protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 576

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 87/179 (48%), Gaps = 16/179 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           K L  +  ++  L   D L+ + N   F   L    ++       LS++  DIDYFK  N
Sbjct: 391 KRLETANQKLQTLVTSDGLTMIANRRKFDEYLDQEWQRCKRAKVWLSLLMCDIDYFKHYN 450

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD  +  ++  +      PM  V R GGEEFA     +    A  +A  +++ 
Sbjct: 451 DTYGHQAGDDCLRKIAQAMEKTVVRPMDLVARYGGEEFAVILSDTGLNGACHVARRIQED 510

Query: 203 IENSQINIS-SGPSIHITISAGIAERC---HKEPIST--IIYRADQALYVAKKSGRNRV 255
           ++N  I  S S  S H+T+S GI   C     E +S   +I  AD+ALY AK+ GRNR+
Sbjct: 511 VKNLNIAHSESSVSTHVTLSIGIT--CLIPDDEDLSMDLLIKTADEALYKAKRKGRNRM 567


>gi|303326446|ref|ZP_07356889.1| GGDEF domain protein [Desulfovibrio sp. 3_1_syn3]
 gi|302864362|gb|EFL87293.1| GGDEF domain protein [Desulfovibrio sp. 3_1_syn3]
          Length = 483

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 12/163 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+ L N  A        + +   +        FD+D+FKQIND  GH  GD
Sbjct: 323 LEKLAVTDKLTSLPNRGALGDIISREVEAARDWKRTCHAFLFDVDFFKQINDRHGHLAGD 382

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+   +       G    V R GG+EF       +E+  A+L   L  + E+ ++    
Sbjct: 383 RVLVLAARLARENAGEDGMVARWGGDEFFGLLHADAEESRALLERLLAAMREHPELR--- 439

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                +++S G+      + + +++ RAD+ALY +KK GR+R+
Sbjct: 440 --KWGVSLSIGVTRIKETDDMDSLVSRADEALYRSKKDGRDRL 480


>gi|303247216|ref|ZP_07333490.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
 gi|302491375|gb|EFL51263.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
          Length = 288

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 84/166 (50%), Gaps = 12/166 (7%)

Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+ L N  AF   L +         + L++V  D+D FK +ND +GHP GDKV+
Sbjct: 94  LSEHDPLTKLYNRGAFERILSAELVRAYRAGQSLALVLLDVDDFKAVNDTYGHPCGDKVL 153

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI--NISSG 213
             L   L+       +  R+GGEEFA          A ++ + +   + +  I  +  S 
Sbjct: 154 EDLGAMLLAEKRAYDYAARIGGEEFALILPSVGLVRAEMVVSRVLAAVRSMTILCDGVST 213

Query: 214 PSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVC 257
           P +HITISAG+A    K P +   +   AD ALY AK +G++RV+ 
Sbjct: 214 P-LHITISAGLAITKGKIPTTREKLYALADTALYQAKTAGKDRVMA 258


>gi|299534196|ref|ZP_07047547.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298717843|gb|EFI58849.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 456

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 15/212 (7%)

Query: 63  YILVENLSLVIISITISLLLGYIS-----GSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           Y +    +L+I S+  +L + +I      G  LK    + + ++ L+R D L+GL N   
Sbjct: 241 YAVWRQRALLIASVMGTLTMAFIGLSFAFGVQLKRRMRAESELALLARTDGLTGLNNRRK 300

Query: 118 F-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
                          +   S++F DID+FK  ND +GH  GD V+A ++  +      P 
Sbjct: 301 LDEIIEHEWHRAKRSHSAFSLLFVDIDWFKAYNDTYGHQAGDMVLATVARCIASNIRRPE 360

Query: 171 -FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               R GGEEF      ++    A++A ++R+ +    I  +      IT+S G A    
Sbjct: 361 DSAARYGGEEFIVVLPDTTLDGGALIAENIREAVSELAIAHTGSEFGCITVSIGCAAWVP 420

Query: 230 KE--PISTIIYRADQALYVAKKSGRNRVVCFS 259
            +   +  ++  AD+ALY AK +GRN+VV  S
Sbjct: 421 GKDLDVQEVLRSADKALYGAKMTGRNKVVLSS 452


>gi|285019288|ref|YP_003376999.1| sensor protein [Xanthomonas albilineans GPE PC73]
 gi|283474506|emb|CBA17007.1| putative sensor protein [Xanthomonas albilineans]
          Length = 569

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 76/163 (46%), Gaps = 8/163 (4%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      SL          +  LS++  D+D+FKQ ND  GH  GD ++A + 
Sbjct: 402 DPLTGLFNRRYLEESLQHELARCERRSMPLSLLMLDVDHFKQFNDVHGHGGGDSLLAAVG 461

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L           R GGEEF      +  +EA ++A  +R        N+       +T
Sbjct: 462 QMLSSRLRGEDIACRYGGEEFTVILPETGPEEALVIAEHIRAAAPQLNANLDGKALPGVT 521

Query: 220 ISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDI 261
           +S G+A       ++T + R AD ALY AK+SGRN+V  +  I
Sbjct: 522 LSIGLASYSRDGTVATTLLRKADAALYRAKRSGRNQVQQYDSI 564


>gi|257459114|ref|ZP_05624233.1| putative diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
            sensor [Campylobacter gracilis RM3268]
 gi|257443499|gb|EEV18623.1| putative diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
            sensor [Campylobacter gracilis RM3268]
          Length = 1355

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 98/197 (49%), Gaps = 13/197 (6%)

Query: 75   SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNE 127
            S+T + +L +   S +K+     + +++++  D L+GL N          F ++ G  ++
Sbjct: 810  SLTSNFILMFTEISQIKQ---KESELAKIAHHDALTGLPNRVYFMKAAQRFTANSGENSK 866

Query: 128  KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
             ++++F D D FK IND +GH VGD  +  +S  +  +      + RLGG+EF A     
Sbjct: 867  LMAVLFIDFDGFKAINDTYGHEVGDMFLQAISKAMSGLLRKGDILARLGGDEFGAIIGDL 926

Query: 188  SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALY 245
              ++AA +  D    I   + N+  G  I  +IS G A  +   K     ++ RAD+A+Y
Sbjct: 927  QSKDAAHVLLDRLLGISKMKFNL-KGNEISASISVGAAFYDGSEKIDFPGLLSRADRAMY 985

Query: 246  VAKKSGRNRVVCFSDIE 262
             AK SG+NR   F   E
Sbjct: 986  RAKTSGKNRYCIFERAE 1002


>gi|157164638|ref|YP_001467734.1| DNA polymerase III delta prime subunit HolB [Campylobacter concisus
           13826]
 gi|112800329|gb|EAT97673.1| diguanylate cyclase [Campylobacter concisus 13826]
          Length = 349

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 5/155 (3%)

Query: 107 DCLSGLLNHSAFISSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+GLLN ++        N       +IV  DID FK+IND +GH  GD+V+  LS   
Sbjct: 187 DPLTGLLNRASMQQIFRQKNLFDGNDFAIVMCDIDNFKKINDTYGHGAGDEVLKSLSKIF 246

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
              F     V R GGEEF A      + +A  +   +R+ +  + +   +   I      
Sbjct: 247 KNAFRNEDRVARFGGEEFLAVIFDVKKAKAVSILERIRETLNQNVVEFENHRIIATMTFG 306

Query: 223 GIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            +A   H E  I  +I +AD+ LYV K++G+N V+
Sbjct: 307 VVAHSGHTEVNIERMIKQADELLYVGKRNGKNIVM 341


>gi|59713338|ref|YP_206113.1| GGDEF domain-containing protein [Vibrio fischeri ES114]
 gi|59481586|gb|AAW87225.1| GGDEF domain protein [Vibrio fischeri ES114]
          Length = 482

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 9/174 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEK--LSIVFFDIDYFKQI 142
           LK+     ++ S+L+  D L+G+ N  AF            N+K   S++  DID FK+ 
Sbjct: 306 LKKTRAQKDKYSELAYNDYLTGVNNRRAFEKQANKVFKTYQNDKQVFSLIMCDIDNFKEY 365

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH VGD++I   S+           V RLGG+EF        +++A ++A  L+ +
Sbjct: 366 NDKFGHDVGDQMITAFSEACSAQINQDDIVARLGGDEFIVLLHHKDKEQAVMVAESLQNV 425

Query: 203 IENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
           I +  + +     + +T S G+A        +  ++  AD  LY AK++GRN V
Sbjct: 426 IRDLSV-LVDDQELSMTCSMGVATVSELTTSLHELLNIADTQLYKAKEAGRNCV 478


>gi|119775663|ref|YP_928403.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B]
 gi|119768163|gb|ABM00734.1| GGDEF domain-like protein [Shewanella amazonensis SB2B]
          Length = 319

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 14/180 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF----------ISSLGSYNEKLSIVFFDIDYFKQ 141
            ++ ++ R+   S+ D L+GLLN  A+          I +         ++ FDID+FK+
Sbjct: 126 RIYENFARVVLDSQTDGLTGLLNRKAYDARLFHLFSHIRTETRRAPYFWMLTFDIDFFKK 185

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH  GD+V+  +S  +   F     + R GG+EF       S+ E   +   L  
Sbjct: 186 INDTLGHLYGDEVLLRISRAMNDCFSDDDALFRFGGDEFVVLLDNKSQHEVECICRKLMA 245

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            +     +  +GP   +T+S GI     ++   +++ +AD+ALY AK +GRNR   + D+
Sbjct: 246 DVGKVH-HEKTGP---VTLSIGITSLTLEDNPMSVMMKADKALYFAKDNGRNRWAFYHDL 301


>gi|327485169|gb|AEA79576.1| GGDEF family protein [Vibrio cholerae LMA3894-4]
          Length = 312

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 8/167 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFI--SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           IS     + S+ID L+ L N   F   S   +    L ++ FDID+FKQIND +GHP GD
Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPETLLGLIIFDIDHFKQINDTYGHPAGD 205

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L           R GGEEF              LA ++R  +E+  + +  
Sbjct: 206 YVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANVIGLAENIRCYVESHTL-MWQ 264

Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  I +T+SAG    A   H      +++ ADQAL  AK+ GRNRV+
Sbjct: 265 GQQIALTLSAGCTIGAMMSHN--WDNLLHTADQALLSAKRLGRNRVI 309


>gi|306812536|ref|ZP_07446729.1| putative diguanylate cyclase [Escherichia coli NC101]
 gi|305853299|gb|EFM53738.1| putative diguanylate cyclase [Escherichia coli NC101]
          Length = 455

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 13/160 (8%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216
           +         + R+GGEEF         + A  LA  +R+ +E     N +  I     +
Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTEIDTECAKALAERIRENVERLTGDNPEYAIPQ--KV 402

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            I+I A + ++    P   I   AD ALY AK++GRN+VV
Sbjct: 403 TISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 441


>gi|134093574|ref|YP_001098649.1| hypothetical protein HEAR0293 [Herminiimonas arsenicoxydans]
          Length = 556

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 10/159 (6%)

Query: 106 IDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           ID L+ L N   F++ +             + +++  D+D+FK IND++GH +GD V+  
Sbjct: 394 IDFLTQLPNRRYFMTRMEEELARTRRIDGARTAVLMCDLDHFKTINDSYGHAIGDLVLKH 453

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            +  L         VGR+GGEEFA     +   EA I A  +R  +    + I+   +I+
Sbjct: 454 FAVILRNALRRNDMVGRVGGEEFAVVLFDAGVAEAEIFAQRVRSQLAEIPL-IALNQNIN 512

Query: 218 ITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +T+S GIA        I   + R+D ALY AK++GRNR+
Sbjct: 513 VTVSIGIAMMHASDANIDVSLSRSDTALYRAKQAGRNRI 551


>gi|54302104|ref|YP_132097.1| GGDEF family protein [Photobacterium profundum SS9]
 gi|46915525|emb|CAG22297.1| hypothetical GGDEF family protein [Photobacterium profundum SS9]
          Length = 413

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 80/173 (46%), Gaps = 27/173 (15%)

Query: 106 IDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           ID L+ +    A  + L +  +  ++   DID+FK+ ND +GH  GD V+  ++ QL+  
Sbjct: 243 IDQLTAIPGRRALETELKNLGKTYTLAMLDIDHFKKFNDLYGHKTGDNVLTLVA-QLITK 301

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPS------- 215
            G    + R GGEEF     G   ++       LR  I    +   N +  P        
Sbjct: 302 VGGGAQIFRYGGEEFTILFKGKKSEQCEEHLEKLRLAIAEYNLVLRNYAERPDNDKQGSM 361

Query: 216 ----------IHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255
                     IH+T+S GIA+    EP S    ++  AD ALY AK+SGRNR+
Sbjct: 362 TRKNNVIHRYIHVTVSIGIAD---SEPTSNPGIVLKAADDALYRAKESGRNRL 411


>gi|330955138|gb|EGH55398.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 318

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 110/256 (42%), Gaps = 31/256 (12%)

Query: 23  SPHTFMIYFSIF-----FSIFIATVIF---IANIFLFYIGLTPFYGLEYILVENLSLVII 74
           SPH    Y         FSIF+  + +   + ++ +  +GL   Y  ++   E    V+ 
Sbjct: 6   SPHMVRKYLYTLLWFYVFSIFLLAIAWEFELESVAMVAMGLP--YDQDFENAERWRFVLT 63

Query: 75  SITISLLLGYISGSILKELFI----SYNRI-------SQLSRIDCLSGLLN----HSAFI 119
           S   ++L   I   +LK L      SYN +         L+R D LSGLLN    H   +
Sbjct: 64  STGFAVLSMVIPFILLKRLMQRLHSSYNDLLESQALSESLARHDPLSGLLNRRVFHEQLV 123

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGE 178
           + L       ++   D+D FK IND  GH  GD  I  +++ L     G    V RLGG+
Sbjct: 124 ARLRQPATHTAVFLIDLDKFKLINDTHGHAAGDAAICAVAESLRDATVGWQASVARLGGD 183

Query: 179 EFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTI 236
           EF  A  G  S  E   LA ++   I  S + +   P + ++ + GIA           +
Sbjct: 184 EFGLAVSGDFSHAELGPLAENILAKIAASSVGL---PRVVLSATLGIAIAPMDGSDADLL 240

Query: 237 IYRADQALYVAKKSGR 252
           + RAD A+Y  K  GR
Sbjct: 241 LQRADSAMYRGKTGGR 256


>gi|300949591|ref|ZP_07163580.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1]
 gi|300954759|ref|ZP_07167190.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1]
 gi|300318285|gb|EFJ68069.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1]
 gi|300450997|gb|EFK14617.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1]
          Length = 452

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND  GHPVGD+VI  + + 
Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTRGHPVGDQVIKTVVNI 344

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +         + R+GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 404

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 405 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 441


>gi|323528611|ref|YP_004230763.1| diguanylate cyclase [Burkholderia sp. CCGE1001]
 gi|323385613|gb|ADX57703.1| diguanylate cyclase [Burkholderia sp. CCGE1001]
          Length = 517

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 14/191 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEK 128
           + +S LL +     L+    +   +++L+  D L+GL N       L           + 
Sbjct: 323 VVVSWLLAFA----LRGKLQAQAALTRLAATDPLTGLGNRRVLDKRLDEEWRRARRTGQP 378

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187
           LS +F DID+FK+ ND +GH  GD+ ++ +++ +       +  V R GGEEFA     +
Sbjct: 379 LSALFIDIDHFKRFNDTYGHASGDEALSAVAECIATTVRRAVDVVARYGGEEFAVILPDT 438

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALY 245
           S   A  +A  +R+ ++   I      S  +T+S G A       E    ++  AD+ LY
Sbjct: 439 SADGALAVAEKIRRRVQTHDILHGGDGSPTVTVSVGCATSVPAQGENALDLLAAADRQLY 498

Query: 246 VAKKSGRNRVV 256
           +AK +GRNRV 
Sbjct: 499 LAKAAGRNRVA 509


>gi|254294194|ref|YP_003060217.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Hirschia baltica ATCC 49814]
 gi|254042725|gb|ACT59520.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Hirschia baltica ATCC 49814]
          Length = 785

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 13/169 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPV 150
            +I+ ++  D L+G+ N + F + L    E++       ++   D+D FK +ND  GHP 
Sbjct: 334 KKIAYMAHFDALTGVHNRANFSTELEKAVERMHTQGKPFALHCIDLDNFKTVNDTMGHPA 393

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL--RKIIENSQI 208
           GD ++  ++ +L +       VGRLGG+EF    +G ++ E A+L +D+    ++E   +
Sbjct: 394 GDSLLKIVAHRLSMSISDGDIVGRLGGDEFMVLQMGCNDAEEAMLTSDMITDALLEPVSL 453

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR--NRV 255
             S  P +  ++    A R   E    I+  AD ALY AK+ GR  NR+
Sbjct: 454 MGSVLP-VSGSVGTSFAPR-DGETSKEIMQHADLALYAAKQDGRGCNRM 500


>gi|226939876|ref|YP_002794949.1| hypothetical protein LHK_00948 [Laribacter hongkongensis HLHK9]
 gi|226714802|gb|ACO73940.1| GGDEF domain protein [Laribacter hongkongensis HLHK9]
          Length = 333

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 17/183 (9%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQ 141
           ++ ++L  S +++ Q +  D L+GL+    F + LG +           I+  DID+FK 
Sbjct: 135 TMREQLAQSLSQLDQANH-DALTGLMTRRIFFNQLGDWLTMNLARRGAYILMADIDHFKA 193

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH  GD VI  ++D L           R GGEEF           A  +A  +R+
Sbjct: 194 INDTHGHIAGDAVIRTVADCLRAELRADDLSCRFGGEEFCVLIPTGQTANAVAMAERIRR 253

Query: 202 IIENSQINISSGPSIHITISAGIAE---------RCHKEPISTIIYRADQALYVAKKSGR 252
             EN+   +     I   IS G+A          R  ++ +  ++  ADQALY AK++GR
Sbjct: 254 RCENTPA-VFRDRVIPFRISIGLAPVPTEGAQGIRPDEKWVEHLLEDADQALYEAKRTGR 312

Query: 253 NRV 255
           NR 
Sbjct: 313 NRT 315


>gi|193222219|emb|CAL60520.2| conserved hypothetical protein, putative PAS, PAC and GGDEF domains
           [Herminiimonas arsenicoxydans]
          Length = 619

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 10/159 (6%)

Query: 106 IDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           ID L+ L N   F++ +             + +++  D+D+FK IND++GH +GD V+  
Sbjct: 457 IDFLTQLPNRRYFMTRMEEELARTRRIDGARTAVLMCDLDHFKTINDSYGHAIGDLVLKH 516

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            +  L         VGR+GGEEFA     +   EA I A  +R  +    + I+   +I+
Sbjct: 517 FAVILRNALRRNDMVGRVGGEEFAVVLFDAGVAEAEIFAQRVRSQLAEIPL-IALNQNIN 575

Query: 218 ITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +T+S GIA        I   + R+D ALY AK++GRNR+
Sbjct: 576 VTVSIGIAMMHASDANIDVSLSRSDTALYRAKQAGRNRI 614


>gi|119502851|ref|ZP_01624936.1| diguanylate cyclase [marine gamma proteobacterium HTCC2080]
 gi|119461197|gb|EAW42287.1| diguanylate cyclase [marine gamma proteobacterium HTCC2080]
          Length = 403

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 11/176 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHS----AF---ISSLGSYNEKLSIVFFDIDYFKQIND 144
           +L  +  +++ L+++D L+GL N      AF   +S        ++++  D+D+FK  ND
Sbjct: 222 QLQEARKQLADLAKLDELTGLRNRRGADRAFDMEVSRAQRGGSSIAVIMIDVDHFKAYND 281

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GHP GD V+  ++  L  V      +  R+GGEEF     G+++ +A +    +R  I
Sbjct: 282 TYGHPSGDDVLKRIAGVLRSVTARAGELAIRMGGEEFLLLLPGANQADALVAGERIRTRI 341

Query: 204 ENSQINISSGPSIHI-TISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              +I  S+ PS  I T+S G+A            ++  AD+ALY +K+ GRN V 
Sbjct: 342 MALEIEHSASPSGSIVTVSQGVAACIPSMTTEFKQLLEAADKALYSSKEGGRNTVT 397


>gi|146311833|ref|YP_001176907.1| RNase II stability modulator [Enterobacter sp. 638]
 gi|145318709|gb|ABP60856.1| diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638]
          Length = 663

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 18/185 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           SG+ + E   +  R+  L+  D ++GL N +A        IS  G    ++ +V+ D+D 
Sbjct: 219 SGTDITEERRAQERLRVLANTDTITGLPNRNAIHELISDSISQRGET--QVGVVYLDLDN 276

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAI 194
           FK++ND +GH  GD+++  ++  ++        + RLGG+EF   A  +S    E  A+ 
Sbjct: 277 FKKVNDAYGHMFGDQLLQSVALAILSCLDEGQVLARLGGDEFIVLATDTSQSTLEAMASR 336

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +   LR+      I I +G S+ I+++       H     +II  AD A+Y AK+SGR +
Sbjct: 337 ILTRLRQPFRIGLIEIYTGCSLGISLAPQ-----HGTDRESIIRNADTAMYTAKESGRGK 391

Query: 255 VVCFS 259
              FS
Sbjct: 392 FCVFS 396


>gi|310780015|ref|YP_003968347.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
 gi|309749338|gb|ADO83999.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
          Length = 320

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 10/171 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEK----LSIVFFDIDYFKQIND 144
           E+  S  ++ +LS  D L+G+ N      S+    S +E+     S++  DID+FK++ND
Sbjct: 141 EIEKSRKKLHELSITDELTGIYNRRFIFESIKKEISRSERNGGIYSLMLIDIDFFKKVND 200

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+V+  ++ ++          GR GGEEF      +  + A + A  LRK +E
Sbjct: 201 LCGHLGGDEVLKNVASEIKNNIRNMDLFGRFGGEEFILLLPETDLELALLCAERLRKAVE 260

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +        P   +T+S G+ +    E +  I+ R D+ALY AK +GRNRV
Sbjct: 261 SITFPKVGHP---VTVSIGVGQYSIGETLDDILDRVDKALYKAKNNGRNRV 308


>gi|194365007|ref|YP_002027617.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
 gi|194347811|gb|ACF50934.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
          Length = 356

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 84/173 (48%), Gaps = 14/173 (8%)

Query: 91  KELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQI 142
           +++ ++ N  +++ SR D L+GL N  A  ++L      +        +   DID+FK I
Sbjct: 186 QDVLLAQNADLAEQSRTDALTGLPNRRAMAAALEEAVAVVDDQPGVACVALLDIDHFKHI 245

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD+V+A L   L   F       R GGEEF A    +    A +    LR  
Sbjct: 246 NDFQGHATGDRVLAELGVLLRSHFAGRGMAARYGGEEFVAVMPSTDLHTAELQCEFLRLA 305

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + +  +         +T+S G+A+    E +   + RAD+ALY AK +GRNRV
Sbjct: 306 VADLPLGFP------VTVSIGVAQHQPGESVDDTLARADKALYRAKGNGRNRV 352


>gi|83592879|ref|YP_426631.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodospirillum rubrum ATCC 11170]
 gi|83575793|gb|ABC22344.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodospirillum rubrum ATCC 11170]
          Length = 764

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 89/167 (53%), Gaps = 14/167 (8%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N    +  + +       ++ +++++F DID FKQIND+ GH  GD ++   +
Sbjct: 316 DALTGLPNRQLLLDRVSTALDLARRHDRRVAVMFMDIDRFKQINDSMGHAAGDVLLKQAA 375

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS-SGPSIH 217
            +L  V      +GRLGG+EF   A G   E EA  LA+   +++E ++   +  G  ++
Sbjct: 376 SRLAAVLRPQDTLGRLGGDEFLVVAPGLRWESEATALAS---RLLEVARRPFTIDGREVY 432

Query: 218 ITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS-DIE 262
           +++S G++           ++  AD A+Y+AK  GR+    F+ DIE
Sbjct: 433 VSVSIGVSLGPVDGTTAQALMRNADAAMYLAKGGGRDAAHFFTPDIE 479


>gi|323947690|gb|EGB43693.1| GGDEF domain-containing protein [Escherichia coli H120]
          Length = 269

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 79/166 (47%), Gaps = 11/166 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVG 151
           ++   +  D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  G
Sbjct: 107 QLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKG 166

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  L+  L         V R GGEEF      +    A  LA  +R  +  ++++IS
Sbjct: 167 DEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSIS 224

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             P    T+S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 225 GLPRF--TVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 268


>gi|319891748|ref|YP_004148623.1| diguanylate-cyclase (GGDEF) domain-containing protein
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317161444|gb|ADV04987.1| diguanylate-cyclase (GGDEF) domain-containing protein
           [Staphylococcus pseudintermedius HKU10-03]
 gi|323465083|gb|ADX77236.1| diguanylate cyclase (GGDEF) domain protein [Staphylococcus
           pseudintermedius ED99]
          Length = 356

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 97/208 (46%), Gaps = 13/208 (6%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-- 123
           VE L L+ IS+  +L+       +L+  F    R      +D L+GL N   F   L   
Sbjct: 150 VEVLYLIPISMVATLVTAVFYVDLLR-FFSLIERYENEDTVDYLTGLGNVKEFDRHLNEM 208

Query: 124 ---SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
              + NE+  L+++  DID FK +ND + H  GD V+  +S  L         + R GGE
Sbjct: 209 ARVAENERQSLALLLIDIDGFKDVNDAYTHHAGDAVLKQMSHLLQNYVPKKTRIFRNGGE 268

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI---AERCHKEPIST 235
           EF+      S  E   LA  +RK +E S  ++     I +++S G+       HK     
Sbjct: 269 EFSIVLRDCSLDECVKLAESIRKAVEKSNFHLPDKIVIKLSVSIGVGYMTSESHKSQ-RK 327

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +   AD  L+VAK  GRN+V+ FS I N
Sbjct: 328 LFKDADDMLHVAKNEGRNQVM-FSPIIN 354


>gi|310829677|ref|YP_003962034.1| putative GGDEF domain protein [Eubacterium limosum KIST612]
 gi|308741411|gb|ADO39071.1| putative GGDEF domain protein [Eubacterium limosum KIST612]
          Length = 611

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 87/168 (51%), Gaps = 10/168 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFF--DIDYFKQINDNFGHPVGD 152
           ++Q SR D L+ L N  A    +         E     FF  DID FK IND +GH VGD
Sbjct: 447 MNQASR-DSLTNLYNKKATEEQITFILKNERRETCCHGFFLLDIDDFKGINDTYGHGVGD 505

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  ++D L+ +F T   VGR+GG+EFA     ++ +E  IL      I +  +I ++ 
Sbjct: 506 QVLRDIADCLLRLFRTSDIVGRIGGDEFAVFLRNTNTRE-DILKRARELIADFRRIPVTE 564

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           G  +  ++   +AE   K+   ++   AD A+Y AK+ G+N+   + +
Sbjct: 565 GQYVSCSLGVVVAENSEKD-FESLYSHADDAMYEAKRKGKNQYAVYGE 611


>gi|226954019|ref|ZP_03824483.1| two-component response regulator [Acinetobacter sp. ATCC 27244]
 gi|226835230|gb|EEH67613.1| two-component response regulator [Acinetobacter sp. ATCC 27244]
          Length = 409

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 86/176 (48%), Gaps = 15/176 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           EL     ++S LS+ D L+GL N       L +  ++       ++I+  DID+FK  ND
Sbjct: 222 ELMRQAQQLSILSQQDALTGLANRRYLDEVLENEWKRAMRHEMPITIMMIDIDFFKLYND 281

Query: 145 NFGHPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
             GH  GD   + IA L   +    G      R GGEEF      + + +A I    L +
Sbjct: 282 TLGHIQGDQCLRRIAILLGSITSRSGD--LAARYGGEEFLLLFSMTDQDQALIQVKRLME 339

Query: 202 IIENSQIN-ISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254
           ++ N  IN   S  S H+TIS G+A       + +S  I RAD ALY+AK +GRN+
Sbjct: 340 LVSNIGINHPKSQISKHVTISVGVATMVPSLGDSLSEFISRADHALYIAKSNGRNQ 395


>gi|307152484|ref|YP_003887868.1| PAS/PAC sensors-containing diguanylate cyclase/phosphodiesterase
           [Cyanothece sp. PCC 7822]
 gi|306982712|gb|ADN14593.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7822]
          Length = 619

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 85/169 (50%), Gaps = 25/169 (14%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD---KVIA 156
           D L+GL+N   F       + ++ S N   ++ + D+D FK IND+ GH  GD   + I+
Sbjct: 193 DPLTGLVNRQVFEQRVEKALENVKSQNMTHTLGYLDLDKFKMINDSCGHVAGDHLLRQIS 252

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-----SQINIS 211
           FL  Q +    T   + RLGG+EF    L    +E   +A  LR+ +E+      Q   S
Sbjct: 253 FLLQQQIRSSDT---IARLGGDEFGLLLLNCPIEEGKKIAETLRQALEDFRFIWEQQRFS 309

Query: 212 SGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            G SI  + I A  A+      ++T++  AD A YVAK  GRNR+  FS
Sbjct: 310 IGASIGLVPIDAESAD------VTTLLDTADTACYVAKSRGRNRIHTFS 352


>gi|168202276|ref|ZP_02629846.1| GGDEF domain protein [Clostridium perfringens C str. JGS1495]
 gi|169298703|gb|EDS80782.1| GGDEF domain protein [Clostridium perfringens C str. JGS1495]
          Length = 545

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 5/167 (2%)

Query: 99  RISQLSRI-DCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           R S+L  + D L  + N     ++I++L   +  +S +  D+DYFK  NDN+GH  GD +
Sbjct: 372 RDSKLDSLKDGLCNIYNRRFLDSYINNLKEKDLPISFLMIDVDYFKLYNDNYGHQAGDFI 431

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213
           +  ++  L         V R GGEEF     G+S+  +   A  +++ ++N  I    S 
Sbjct: 432 LKSIASVLEKNSRKEDIVARYGGEEFCVLLKGASKYSSINYAKRIKENLDNLNIKHKYSK 491

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            S H+T S GI     K  +   I  +D+ALY++K  GRN      D
Sbjct: 492 TSDHVTFSIGIYTTYTKNDLKNAIKFSDKALYISKTRGRNTYTYLED 538


>gi|146311798|ref|YP_001176872.1| diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638]
 gi|145318674|gb|ABP60821.1| diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638]
          Length = 709

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 103/201 (51%), Gaps = 13/201 (6%)

Query: 64  ILVENLSLVIISIT--ISLLLGYISGSILKELFISYNRISQL-SRIDCLSGLLNHSAFIS 120
           I V + +LV++ I   ISL+  +     L +     N+  +L +R D L+GL N      
Sbjct: 217 IWVSSTTLVLLGIMLIISLVDSHFRTQRLTDNLRQLNKQLELQARFDALTGLANRHQMDI 276

Query: 121 SLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           SL           ++ +++F DID+FK IND +GH VGD+++  ++ ++       M + 
Sbjct: 277 SLQDCLHTSLLNKKQFAVMFLDIDHFKLINDAWGHQVGDELLINVAQRITARLVPGMTLA 336

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEP 232
           RLGG+EF        +++   L+  L  + E  +     G +I++T+S G++    H E 
Sbjct: 337 RLGGDEFILLVPDCDDEKITTLSMTL--LDEIRRPFAIGGHAINVTLSVGVSLYPQHGET 394

Query: 233 ISTIIYRADQALYVAKKSGRN 253
           +  + ++AD A+Y  K+ GRN
Sbjct: 395 LHELKFKADAAMYHIKQEGRN 415


>gi|170725870|ref|YP_001759896.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella woodyi ATCC 51908]
 gi|169811217|gb|ACA85801.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella woodyi ATCC 51908]
          Length = 301

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 77/158 (48%), Gaps = 13/158 (8%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N    I +  S       +   LS++  DIDYFK +ND FGH  GD V+  ++
Sbjct: 138 DQLTSLFNRHYLIEAANSKVARIKRHGGTLSLMMIDIDYFKLVNDKFGHQAGDTVLRAVA 197

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF       S  +A   A  LR +IE     I  G  I +T
Sbjct: 198 SVLSSGSRKEDVVARFGGEEFVVLLDDCSILDADDKAEQLRSLIEQL---IPEG--ISVT 252

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S GIAE     E    ++ RADQA+Y+AK+ GRN VV
Sbjct: 253 ASFGIAELDPDGETFEHLLARADQAVYLAKEQGRNCVV 290


>gi|89092025|ref|ZP_01164980.1| sensory box/GGDEF family protein [Oceanospirillum sp. MED92]
 gi|89083760|gb|EAR62977.1| sensory box/GGDEF family protein [Oceanospirillum sp. MED92]
          Length = 384

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 15/158 (9%)

Query: 109 LSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ + N  AF+         + S ++ L+++F D+D FK INDNFGH  GD V+  ++++
Sbjct: 226 LTRVPNRKAFMKKGQQILDDVASKSKCLTVLFVDVDDFKAINDNFGHEAGDLVLVEVANR 285

Query: 162 LVVVFGTPMFVGRLGGEEFA----AAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           L V      FV R+GG+EFA        G++ Q    LA  L  ++  S  +++ G S+ 
Sbjct: 286 LTVALREGDFVARIGGDEFAMIVQCPESGANSQR---LAERLLDVMNQSYEHLAEGLSVS 342

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++   +      E ++ +I  AD+ +Y  KKSG+N V
Sbjct: 343 CSVGGAVFPE-EGEDLAALIRVADERMYRVKKSGKNGV 379


>gi|148549517|ref|YP_001269619.1| diguanylate cyclase [Pseudomonas putida F1]
 gi|148513575|gb|ABQ80435.1| diguanylate cyclase [Pseudomonas putida F1]
          Length = 493

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 8/160 (5%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+ +D L+GL N  +F       +      +  L  +  D+D+FK +NDN GH  GD+V+
Sbjct: 328 LATLDSLTGLHNRRSFDLLAAQALREARRDSSPLVALLIDLDHFKALNDNHGHLAGDEVL 387

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              ++ L         + R GGEEF      +   +A  +A  +R+  E    +  + P 
Sbjct: 388 RQFANVLQGSLRQSDILCRWGGEEFIVLLREAEGGQAVEVAEKIRRRTEQLTFSYDNQP- 446

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + +T S G++     + +  ++ RAD+ALY AK++GRNRV
Sbjct: 447 LRLTTSIGLSSLQPGDTLHALLTRADRALYRAKQAGRNRV 486


>gi|115526694|ref|YP_783605.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
 gi|115520641|gb|ABJ08625.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
          Length = 780

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 14/173 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           RI  L+R D L+ L N   F         I+      +  +++F D+D FKQ+ND  GHP
Sbjct: 334 RIIHLARYDELTALPNRVNFRDEIERLLTIAQNRGETQPAALLFIDLDQFKQVNDTLGHP 393

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN-SQ 207
            GD+++  ++++L  +     ++ R GG+EF        S+++AA+LA   R+I++  S+
Sbjct: 394 CGDRLLCDVANRLREMLRPEDYIARFGGDEFVVFQQHLKSDEDAAVLA---RRIVDRLSE 450

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +     + I  S GIA          ++  AD ALY AK  GR     F D
Sbjct: 451 RYVIDHHVVEIGASIGIAMTAPGIKADVLLKNADMALYRAKADGRGTYCFFRD 503


>gi|332535546|ref|ZP_08411321.1| hypothetical protein PH505_cy00160 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035045|gb|EGI71563.1| hypothetical protein PH505_cy00160 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 257

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 90/173 (52%), Gaps = 22/173 (12%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN  A    L         +NE L ++  D+D FK IND +GH  GDKV+  ++
Sbjct: 91  DPLTGLLNRRAGEKRLKKALRECIKHNEHLVLMMIDLDKFKPINDTYGHEAGDKVLIEIA 150

Query: 160 DQLVVVF--GTPMFVGRLGGEEFAAAAL------GSSEQEAAILANDLRKIIENSQINIS 211
            +   +F     M + RLGG+EF  A          ++Q+A  L N+L++     Q++IS
Sbjct: 151 HRFKTLFHEKNDMCI-RLGGDEFIVAQQIKTYDKTETQQKAIALLNELQQ-----QVSIS 204

Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +  +  +  S GIA   +    +  +++  D+ LY  K++GR +V  + DI+N
Sbjct: 205 NTKTCAVGASIGIAIAPYDGNELHQLMHNGDKTLYHVKETGRGKVAFYDDIKN 257


>gi|320174306|gb|EFW49461.1| hypothetical protein SDB_03188 [Shigella dysenteriae CDC 74-1112]
          Length = 261

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 79/166 (47%), Gaps = 11/166 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVG 151
           ++   +  D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  G
Sbjct: 99  QLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKG 158

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  L+  L         V R GGEEF      +    A  LA  +R  +  ++++IS
Sbjct: 159 DEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSIS 216

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             P    T+S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 217 GLPRF--TVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 260


>gi|295691059|ref|YP_003594752.1| diguanylate cyclase/phosphodiesterase [Caulobacter segnis ATCC
           21756]
 gi|295432962|gb|ADG12134.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Caulobacter segnis ATCC 21756]
          Length = 691

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 86/171 (50%), Gaps = 15/171 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  L+  D L+GL N + F       +S+  +  E   ++  D+D+FK IND  GH  GD
Sbjct: 263 IETLAFKDPLTGLPNRALFQHRFNEAVSASETLGEMFGLIMIDVDHFKDINDTLGHDAGD 322

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
            ++  L+  L   F +   V RLGG+EFA    G   +  A +   ++K+ E  Q  I  
Sbjct: 323 VLLKRLAGMLRRAFRSGDTVARLGGDEFAVILRGLRGE--ADMMRPIQKLQELLQRPIEY 380

Query: 212 SGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFS 259
           +G S   T S G A   H +P +    +I  AD ALY AK++GRNR + F 
Sbjct: 381 AGRSFTATASIGAA--LHGDPEADPAHMIKNADIALYHAKEAGRNRSIVFE 429


>gi|222082594|ref|YP_002541959.1| hypothetical protein Arad_9287 [Agrobacterium radiobacter K84]
 gi|221727273|gb|ACM30362.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 632

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 20/168 (11%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDK- 153
           ++S  D L+GL N  A    L +Y ++        + +  D+D+FK+ ND +GH  GD+ 
Sbjct: 193 RMSNTDYLTGLENRRAVDHRLRNYWKEWQANSRGFTAILVDVDFFKKYNDFYGHQEGDRC 252

Query: 154 ---VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-- 208
              + A + + +  + G+   +GR GGEEF   A  S ++  A LA  +R  +E  ++  
Sbjct: 253 LIHIAASIKEAVAPLGGS---IGRYGGEEFIVLAQFSEKERVAYLAERIRSTVEQLRLLH 309

Query: 209 -NISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
                G S+ +T+S G A         +  II+ AD+ALY AK SGRN
Sbjct: 310 EERRDGTSV-VTVSVGAAFTREQSGAKLEKIIHEADRALYGAKASGRN 356


>gi|18309947|ref|NP_561881.1| GGDEF domain protein [Clostridium perfringens str. 13]
 gi|18144625|dbj|BAB80671.1| probable sensory box/GGDEF family protein [Clostridium perfringens
           str. 13]
          Length = 545

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 5/167 (2%)

Query: 99  RISQLSRI-DCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           R S+L  + D L  + N     ++I++L   +  +S +  D+DYFK  NDN+GH  GD +
Sbjct: 372 RDSKLDSLKDGLCNIYNRRFLDSYINNLKEKDLPISFLMIDVDYFKLYNDNYGHQAGDFI 431

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213
           +  ++  L         V R GGEEF     G+S+  +   A  +++ ++N  I    S 
Sbjct: 432 LKSIASVLEKNSRKEDIVARYGGEEFCVLLKGASKYSSINYAKRIKENLDNLNIKHKYSK 491

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            S H+T S GI     K  +   I  +D+ALY++K  GRN      D
Sbjct: 492 TSDHVTFSIGIYTTYTKNDLKNAIKFSDKALYISKTRGRNTYTYLED 538


>gi|126172885|ref|YP_001049034.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|125996090|gb|ABN60165.1| diguanylate cyclase [Shewanella baltica OS155]
          Length = 341

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 115/254 (45%), Gaps = 37/254 (14%)

Query: 32  SIFFSIFIAT---VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS 88
           S   ++FI T   VI +AN    ++ + P +   +ILV+ +   +I++  S+ L  ++  
Sbjct: 86  SAILAVFINTGVVVIVVANGIGSFLWIYPVFASTFILVKPIEAFLINVIASIALVALANI 145

Query: 89  ---------ILKELFIS-------------YNRISQLSRIDCLSGLLNHSAFISSL---- 122
                    ++  L +S             +  +  L+ +D L+G  N  A  S +    
Sbjct: 146 FDVISLFSFVITILMMSMSAFVYALHGVKQFRLLETLNSVDPLTGAFNRRAMGSDMEAAL 205

Query: 123 --GSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
               +N  K  +   D+DYFK +ND FGH VGD+V+           G    + R GGEE
Sbjct: 206 SNAKHNGVKHLLAILDLDYFKTVNDKFGHAVGDQVLKRFVAITTSHLGKNDRLYRFGGEE 265

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F       SEQ+  I   +LR  I+     +++     IT+S G+A         T + R
Sbjct: 266 FVLLIPEISEQDEFI--QNLRMAIKKE---LTTPDGKEITVSFGVAPWVPGTTTDTWLQR 320

Query: 240 ADQALYVAKKSGRN 253
           AD+ALY+AK+ GR+
Sbjct: 321 ADEALYLAKQQGRD 334


>gi|299531753|ref|ZP_07045155.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298720194|gb|EFI61149.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 387

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 108/214 (50%), Gaps = 21/214 (9%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           ++ L  F G+  ILV   SLV   + I LL   ++G+   E      RI+Q++  D L+ 
Sbjct: 174 FVNLASFRGV-VILV---SLVEGVMAIMLLAMSMTGT---ERHRREERIAQIAARDPLTA 226

Query: 112 LLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           L N  A       +    S     +++  DID+FKQ+ND  GH  GD+++  LSD +  +
Sbjct: 227 LDNRRALYLRAPELLRQASPASPCALLLIDIDHFKQVNDLHGHDAGDRLLVTLSDLIRGL 286

Query: 166 FGTPMFVGRLGGEEFA---AAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITIS 221
                   RLGG+EF     +  G+  QE   L   LR+   + ++   ++   + ++I 
Sbjct: 287 LPHGALAARLGGDEFVILLRSVSGAVVQE---LGQSLRESFAQQARAMFATPEPVSLSIG 343

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A + ++   E +S  + RAD+ALY +K+ GR+R+
Sbjct: 344 ATLFDQSETE-LSHWLKRADEALYASKRKGRHRM 376


>gi|299770292|ref|YP_003732318.1| WspR [Acinetobacter sp. DR1]
 gi|298700380|gb|ADI90945.1| WspR [Acinetobacter sp. DR1]
          Length = 409

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 83/174 (47%), Gaps = 11/174 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           EL     ++S LS+ D L+GL N      +L +       +   L+I+  DIDYFK  ND
Sbjct: 222 ELMQQAQQLSLLSQQDALTGLANRRYLDETLDNEWRRALRHETPLTIMMVDIDYFKAYND 281

Query: 145 NFGHPVGDKVIA-FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GH  GD+ +         +   +   V R GGEEF      ++ Q+A I    L   I
Sbjct: 282 TLGHLKGDECLKEIAIAISSIAARSGDLVARYGGEEFLLLFPMTNSQQALIQVERLMNAI 341

Query: 204 ENSQI-NISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254
           +   I +  S  S  +TIS G+A    +  + IS  + RAD ALY AK +GRN+
Sbjct: 342 DKIAIKHPCSDVSPQVTISVGVATTIPRLNDSISAFVARADHALYKAKTNGRNQ 395


>gi|296450338|ref|ZP_06892097.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296878750|ref|ZP_06902753.1| probable signaling protein [Clostridium difficile NAP07]
 gi|296260831|gb|EFH07667.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296430257|gb|EFH16101.1| probable signaling protein [Clostridium difficile NAP07]
          Length = 395

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 107/242 (44%), Gaps = 30/242 (12%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK-ELFISYNR 99
           +VI     FLF     P  G++ I     S ++ +  I+ L  ++S  + +  +F  Y++
Sbjct: 154 SVIVFGGCFLFLNFFLP--GIQTIPGNEFSNIVNTFFITSLAVFVSTMLYRSRVFTYYDK 211

Query: 100 I---SQLSRIDCLSGLLNHSAFISSLGSYN-------------------EKLSIVFFDID 137
           +    Q   I  ++ LLN       L   N                   E ++ +  DID
Sbjct: 212 LLISQQYEEIYHINNLLNDKVMTDDLTKMNNRRYLEDILQKKLISHANQEPITGMMIDID 271

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAIL 195
           YFKQ NDN+GH  GD  +  ++ ++++ F +       R GGEEF        E++A + 
Sbjct: 272 YFKQFNDNYGHQKGDYCLQNIA-KVILDFTSSENEHAIRYGGEEFFICIFNCDEEDAKLK 330

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRN 253
           +  LRKIIE         P   +T+S G+     +  I+    I   D+ALY AK+ GRN
Sbjct: 331 SECLRKIIETCNFERDDIPLKCVTVSIGVYTNKIERTITLNEFISNCDKALYTAKEQGRN 390

Query: 254 RV 255
            V
Sbjct: 391 CV 392


>gi|268608444|ref|ZP_06142171.1| hypothetical protein RflaF_02965 [Ruminococcus flavefaciens FD-1]
          Length = 337

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 16/218 (7%)

Query: 50  LFYI---GLTPFYGLEYILVENLS---LVIISITISLLLGYISGSILKELFISYNRISQL 103
           LFY+   G   F+G  Y   +  +    +  ++T+   L + S  ++  +  S  ++ + 
Sbjct: 124 LFYVICTGYVAFFGPIYHPDQKFAAFFWIFNAVTVFGFLIFYSRYLITSIISSQEKLIEA 183

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFGHPVGDKVIAFLSD 160
           +  D L+ L N    +  L          F    DID FK+IND +GH  GD+V+  ++D
Sbjct: 184 AHFDRLTHLYNRHYMLERLEEVPADGRESFLAMSDIDNFKKINDTYGHNGGDEVLKTVAD 243

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQ--EAAILANDLRKIIENSQINISSGPSIHI 218
           ++  +  + + V R GGEEF    + SSE   +   +   LRK IE+  I+   G  I +
Sbjct: 244 KIKNICSSCI-VARWGGEEFL---ILSSEPLPDGKDMLERLRKNIESESISFE-GQEIRV 298

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T++ G+A R   + I   +  AD  LY+ K SG+N+VV
Sbjct: 299 TLTIGMAVRKSGQSIDKWVQDADNKLYIGKNSGKNKVV 336


>gi|218549280|ref|YP_002383071.1| diguanylate cyclase; GGDEF domain; PLP-dependent transferase
           [Escherichia fergusonii ATCC 35469]
 gi|218356821|emb|CAQ89449.1| Putative diguanylate cyclase; GGDEF domain; putative PLP-dependent
           transferase [Escherichia fergusonii ATCC 35469]
          Length = 570

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 101/202 (50%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSA------FISS 121
           L+L+    T  L++ +I    ++  +F+  + +   +  D L+ L N  A      F++ 
Sbjct: 362 LTLLWALFTTMLIISWIVIRKMVSNMFVLQSSLQWQAWHDTLTRLYNRGALFEKARFLAQ 421

Query: 122 LGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               N++  S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 ECRENQRPFSVIQVDLDHFKSINDRFGHQAGDRVLSHAAGLISRSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIY 238
                 ++  +A  +A  +R  +   +I I+   ++ I+ S G++  E         +  
Sbjct: 482 CIVLPCANLAQAQEIAERIRLRLNEKEILIARSTTLRISASLGVSSTEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD  LY+AK++GRNR VC SD
Sbjct: 542 LADGRLYLAKQAGRNR-VCASD 562


>gi|314936955|ref|ZP_07844302.1| GGDEF domain protein [Staphylococcus hominis subsp. hominis C80]
 gi|313655574|gb|EFS19319.1| GGDEF domain protein [Staphylococcus hominis subsp. hominis C80]
          Length = 356

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 99/201 (49%), Gaps = 12/201 (5%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLGS 124
           +L+ +II I IS +L   S     +++  ++ +++     + D L+GL N   F   L  
Sbjct: 149 DLTELIILIPISFVLTITSAVTFVDIWHFFSLVTRYENEDKYDYLTGLGNVKEFDRHLNK 208

Query: 125 YNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
            ++K       L+++  DID FK +ND + H  GD V+  +S  L         + R GG
Sbjct: 209 ISQKAEIEHTSLALLLVDIDGFKDVNDTYTHKAGDAVLKQMSQLLKNYVPHQFKIFRNGG 268

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--T 235
           EEF+      S  ++  LA ++R  +E S  ++ +   I +++S G+      E  S   
Sbjct: 269 EEFSIVIFDYSLDQSVKLAENIRMAVEKSSFHLPNKEVIKLSVSIGVGYLSPDEYKSQRK 328

Query: 236 IIYRADQALYVAKKSGRNRVV 256
           +   AD  ++VAKK GRN+V+
Sbjct: 329 VFKDADDMVHVAKKEGRNQVM 349


>gi|218663332|ref|ZP_03519262.1| putative kinase/esterase protein [Rhizobium etli IE4771]
          Length = 588

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 7/158 (4%)

Query: 107 DCLSGLLNHSAFISSLGSYNE----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+GLLN  +F  +L         K++++  D+D+FK+IND FGH VGD V++ +S  L
Sbjct: 162 DHLTGLLNRRSFDCALSELARQESVKVALLHIDVDHFKEINDRFGHAVGDLVLSHVSKIL 221

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
           +          RLGG+EFA         +   + + +++ +E S + +     I +  S 
Sbjct: 222 LEAISAGDVAARLGGDEFAVVITEDECDKTIAVLDQIQRRLE-SPLPVGDQTLI-VPCSI 279

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           G+A     +  + ++ ++D ALY AK++GRNR   FSD
Sbjct: 280 GVASAMSAD-FARLLSQSDLALYHAKRNGRNRAEIFSD 316


>gi|170751167|ref|YP_001757427.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657689|gb|ACB26744.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 785

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 10/169 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  RI++L+  D L+ L N  A  + L    +    + ++  D+D FKQ+ND +GH VGD
Sbjct: 362 AQRRIAELAFCDPLTKLANRRALSARLEHDFTPKRVVKLLLIDLDRFKQVNDTYGHVVGD 421

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +++  ++++L  + G   FV RLGG+E A    G   Q  A+    +  +     I+   
Sbjct: 422 QLLIQVANRLRTIAGPDGFVARLGGDEMAVLVYGDQTQAMAVATAVIEALALPYGID--- 478

Query: 213 GPSIHITISAGIAERCHKEPISTI--IYRADQALYVAKKSGRNRVVCFS 259
              + ++I   I   C  +    I  +  +D ALY +K+ GR R  C++
Sbjct: 479 --DLTVSIGCSIGLCCTDDAQDAIELMQFSDIALYESKRQGRGRTSCYT 525


>gi|168207242|ref|ZP_02633247.1| GGDEF domain protein [Clostridium perfringens E str. JGS1987]
 gi|170661381|gb|EDT14064.1| GGDEF domain protein [Clostridium perfringens E str. JGS1987]
          Length = 299

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 4/129 (3%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSS 188
           +++  DID FK++ND + H VGDK++   +  L   +     ++GR GGEEF      ++
Sbjct: 172 TVIMTDIDSFKKVNDTYSHLVGDKILRDFAKVLNNNIRENSDWIGRYGGEEFIIVLNNTN 231

Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVA 247
            +    +A  LRKIIE  +++   G  S+ IT S G+ E   KE     I  AD+ LY+A
Sbjct: 232 LKNGVKVAEKLRKIIE--KMSFDYGDLSLKITSSFGVCEVSEKEDPFDTIKNADEKLYMA 289

Query: 248 KKSGRNRVV 256
           K +GRN+ V
Sbjct: 290 KMTGRNKTV 298


>gi|118476310|ref|YP_893461.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus thuringiensis str. Al Hakam]
 gi|118415535|gb|ABK83954.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus thuringiensis str. Al Hakam]
          Length = 569

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQAP- 253

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306


>gi|94263614|ref|ZP_01287424.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93456034|gb|EAT06185.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 570

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 14/163 (8%)

Query: 107 DCLSGLLNHSA------FISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GL NH+A        +S    N   L +   D+D+FK++ND +GH  GD+V+  L+
Sbjct: 401 DAMTGLYNHTAGKEHLNLATSTAQRNGSPLCLAIIDVDWFKKVNDTYGHATGDQVLITLA 460

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK---IIENSQINISSGPSI 216
             L     T   V R GGEEF A   G     A  + +++R+    IE     +    + 
Sbjct: 461 RLLKQRLRTTDIVCRFGGEEFGAILPGCDLPTAQRIMDEMRQSYAAIEFRADEV----TF 516

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           H + S G+A     +    +   AD +LY AK  GRNRVV ++
Sbjct: 517 HSSFSCGVASIADCDGPVELWKAADMSLYAAKNGGRNRVVTWT 559


>gi|27367815|ref|NP_763342.1| GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|27359388|gb|AAO08332.1| GGDEF family protein [Vibrio vulnificus CMCP6]
          Length = 639

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 15/179 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQIND 144
           S+ +EL     R++ ++  D L+GL N S    SL + +++     ++F D+D FK +ND
Sbjct: 466 SVEREL----KRLNYVANHDPLTGLANRSHAFQSLQTEHDQGKDQYLLFLDLDGFKAVND 521

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH +GD ++  ++ +L         V RL G+EF         ++A      + +I+E
Sbjct: 522 QFGHAIGDDLLRVVAKRLKNSVFNRDLVARLAGDEFLIGI-----RDAHTYVPVVERILE 576

Query: 205 NSQINIS-SGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFSD 260
             Q  IS  G    +T S G++    K+   +   I+ AD+A+YVAK+ G+N+  C  D
Sbjct: 577 QLQQPISIDGCLCDVTASIGVSHWAVKDGASLEERIHHADEAMYVAKRLGKNQYCCLQD 635


>gi|84625443|ref|YP_452815.1| hypothetical protein XOO_3786 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84369383|dbj|BAE70541.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 165

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 65/128 (50%), Gaps = 6/128 (4%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK++ND FGH  GD+V+  ++  +   F     + R GGE F     G     A  
Sbjct: 24  DIDHFKRVNDTFGHLYGDEVLLLVAQLMQRAFRQHDLLFRFGGEAFVIVVRGVDRDTAVS 83

Query: 195 LANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           L   LR  +          P +  +T+S GI E  H   IS ++  AD+ALY AK+ GRN
Sbjct: 84  LFERLRLAVAQHLF-----PQVGQVTLSTGIVELTHGRLISEMLDEADKALYWAKQHGRN 138

Query: 254 RVVCFSDI 261
           R   ++++
Sbjct: 139 RAALYAEL 146


>gi|307137662|ref|ZP_07497018.1| putative diguanylate cyclase [Escherichia coli H736]
          Length = 264

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 15/161 (9%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND  GHPVGD+VI  + + 
Sbjct: 97  DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTRGHPVGDQVIKTVVNI 156

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216
           +         + R+GGEEF         + A  LA  +R+ +E     N +  I     +
Sbjct: 157 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQ--KV 214

Query: 217 HITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
            I+I A + +     P    IYR AD ALY AK++GRN+VV
Sbjct: 215 TISIGAVVTQENALNPNE--IYRLADNALYEAKETGRNKVV 253


>gi|322419913|ref|YP_004199136.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M18]
 gi|320126300|gb|ADW13860.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M18]
          Length = 311

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 84/174 (48%), Gaps = 11/174 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEK-LSIVFFDIDYFKQIND 144
           EL  +   +   +  D L+GL NH   I  LG         EK +SI+  D+D FK IND
Sbjct: 127 ELLAAREVLRHKASHDSLTGLWNHEEIIGILGQELARAKREEKCVSIIMADLDRFKVIND 186

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD V+   + ++        ++GR GGEEF         + AA  A  LR  + 
Sbjct: 187 TYGHMAGDVVLRSTALKMHSTMRHYDYIGRYGGEEFLVILPECCLECAAAFAERLRLRVC 246

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNRV 255
              ++   G  I +TIS G+A     + +    +++  AD ALY AK+ GRNRV
Sbjct: 247 RDLVDTPEG-MIPVTISLGVASSATGQQMPDAESLVKAADAALYQAKEHGRNRV 299


>gi|95931451|ref|ZP_01314156.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95132497|gb|EAT14191.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 661

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S+L+R+D L+G+ N   F  +L S         E+L I+  DID+FK  ND +GH  GD
Sbjct: 491 LSELARVDALTGIANRREFDQTLSSLWKSSYRKKERLGILMIDIDHFKFYNDQYGHQKGD 550

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
             +  +   +      P  F+ R GGEEF      ++  +A  +A  +++ I    I   
Sbjct: 551 NCLQQVVQAICQSCLRPEDFIARYGGEEFIVLLPQTAHDDAVHVAKRIQQKIAEKAIAHQ 610

Query: 212 SGPSIH-ITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260
             P+   IT+S G+      +  S    I  AD+ LYVAK +GRN+ +C  D
Sbjct: 611 KSPTKPVITLSIGVCSMIPHDLSSEQQFIDCADRRLYVAKNNGRNQ-ICDQD 661


>gi|78047539|ref|YP_363714.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78035969|emb|CAJ23660.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 973

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/159 (35%), Positives = 85/159 (53%), Gaps = 14/159 (8%)

Query: 107 DCLSGLLNHSAFISSLG------SYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN S  + ++       ++ E  L++V  D+D+FKQ+ND  GH VGD V+A + 
Sbjct: 809 DALTGLLNRSGILEAMAEELQGCAHGEHPLAVVLIDLDHFKQVNDEHGHLVGDAVLAKVG 868

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSI 216
            +L         VGR GGEE      G S+Q      + LR I E   I    + +   +
Sbjct: 869 ARLTACLRDSDKVGRYGGEELLLLLPGMSQQS----QHRLRAIHEALSIAPYEVGAARPL 924

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +T S G++     +  ++ + RAD+ALY AK+SGRNR+
Sbjct: 925 QVTCSVGVSWFRVGDTAASQLARADEALYRAKRSGRNRI 963


>gi|327194331|gb|EGE61191.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 567

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 87/159 (54%), Gaps = 9/159 (5%)

Query: 107 DCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+GLLN  +F  +L    G  + K++++  D+D+FK+IND FGH VGD V+  +S  L
Sbjct: 142 DHLTGLLNRRSFDFALSELAGQESVKVALLHIDVDHFKEINDRFGHAVGDLVLCHVSKIL 201

Query: 163 VVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +          RLGG+EFA        ++  A+L +  R++   S + +     I +  S
Sbjct: 202 LEAISAGDVAARLGGDEFAVVITEDECDRTIAVLDHIQRRL--ESPLPVGDQTLI-VRCS 258

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            G+A     +  + ++ ++D ALY AK++GRNR   FSD
Sbjct: 259 IGVASAMSAD-FARLLSQSDLALYHAKRNGRNRAEIFSD 296


>gi|83312701|ref|YP_422965.1| GGDEF domain-containing protein [Magnetospirillum magneticum AMB-1]
 gi|82947542|dbj|BAE52406.1| FOG: GGDEF domain [Magnetospirillum magneticum AMB-1]
          Length = 598

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 85/178 (47%), Gaps = 19/178 (10%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D L+G+ N  AF  +LG    +       LS++  D+D+FK  ND++GH  G
Sbjct: 417 RLRHLAMNDGLTGIANRRAFDETLGQEWRRASRAGTPLSLLMIDVDHFKAYNDHYGHQAG 476

Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-N 209
           D+ +  ++  L      P   V R GGEEF      S+  +A  LA  +R  I   ++ +
Sbjct: 477 DECLKAVAATLAATAKRPADLVARYGGEEFGVILPSSTLADAQALAEKMRLAIARLELPH 536

Query: 210 ISSGPSIHITISAGI-----AERCHKEP-----ISTIIYRADQALYVAKKSGRNRVVC 257
            +S     +TIS G+     AE     P        +I  AD ALY AK +GRNRV  
Sbjct: 537 EASQTEKTVTISIGVSCLNLAESPGALPRNGLDTQILIAHADNALYRAKTTGRNRVTA 594


>gi|329903038|ref|ZP_08273350.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327548516|gb|EGF33182.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 307

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 13/205 (6%)

Query: 69  LSLVIISITISLLL--GYISGSILKELFISYNRISQLSRI---DCLSGLLN----HSAFI 119
           L  VI+++T+ L++  G     +   L  +  ++ Q       D L+GL N    H+  +
Sbjct: 104 LQWVIVALTLPLMVSVGTQVRKLRAALKTTRRQLQQFEEKAIRDELTGLYNRRHLHTELV 163

Query: 120 SSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
           +++   +++     +   D+D+FK IND  GH VGD ++   +            +GR G
Sbjct: 164 AAIARADQQGIPFCLCLIDVDHFKDINDRHGHLVGDVILREFAQVARDSIRDSDVIGRYG 223

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236
           G+EF      +  + A + A  LR       +     P   I++S G+A+    E ++ +
Sbjct: 224 GDEFMQILPDTDLKGAVMHAERLRVYAHFLDLQ-GVLPPHAISLSIGVAQYRPAETVTAL 282

Query: 237 IYRADQALYVAKKSGRNRVVCFSDI 261
           I RAD ALY AK+ GRNRV    DI
Sbjct: 283 IERADTALYRAKERGRNRVEWIDDI 307


>gi|302189850|ref|ZP_07266523.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 685

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 18/187 (9%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEK----LSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++ S    NE+    L +
Sbjct: 227 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 283

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF      L   E
Sbjct: 284 LFMDLDGFKQINDALGHEAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 343

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247
           Q A I    + ++    Q++   G  I +  S GIA    C    +  ++  AD A+Y A
Sbjct: 344 QAAKIAEKLIERVSGRRQVD---GVDITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 399

Query: 248 KKSGRNR 254
           K++GR +
Sbjct: 400 KRAGRQQ 406


>gi|300863525|ref|ZP_07108477.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
 gi|300338481|emb|CBN53619.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
          Length = 300

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 81/162 (50%), Gaps = 16/162 (9%)

Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GL N        +  I       + L I+  DIDYFK+ ND FGH  GD V+  LS
Sbjct: 137 DPVTGLFNRRYLKEFLTREIERSTQAQQSLGIIMLDIDYFKRFNDTFGHDAGDLVLQELS 196

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIH- 217
             L         V R GGEEF      SS ++A   A  LR+ +   Q+N+  +G S+  
Sbjct: 197 LFLQRCVHNSEIVCRYGGEEFVLVLPESSLEDAYQRAEQLRQGV--KQLNVKYNGQSLDV 254

Query: 218 ITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVV 256
           IT+S G+A  C   H +  +  I  AD ALY AK  GR+RV+
Sbjct: 255 ITVSLGVA--CFPEHGKTGAEAIQAADVALYRAKAKGRDRVI 294


>gi|300783187|ref|YP_003763478.1| diguanylate cyclase [Amycolatopsis mediterranei U32]
 gi|299792701|gb|ADJ43076.1| diguanylate cyclase [Amycolatopsis mediterranei U32]
          Length = 412

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 91/182 (50%), Gaps = 16/182 (8%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           ++K+L ++ +R       D  +GL N S +       +++         ++  D+D+FKQ
Sbjct: 237 LVKQLEVAAHR-------DEKTGLYNTSGWHALAERTLAATARARGTFGLLMLDLDHFKQ 289

Query: 142 INDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +ND +GH  GD V+  ++  ++  V G    VGR GGEEF     G ++ +   +A  +R
Sbjct: 290 VNDTYGHLAGDAVLKAVAQSIISAVRGRGDAVGRFGGEEFVVLLPGITQPDIGAVAERIR 349

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + I   ++         +++S GIA        +  ++  AD ALY AK +GRN+VV  +
Sbjct: 350 RAISALRVPAGQLSITGLSVSIGIAVYPTAGASLQRLLDAADTALYHAKATGRNKVVHVA 409

Query: 260 DI 261
           D+
Sbjct: 410 DL 411


>gi|296108287|ref|YP_003619988.1| Predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Legionella pneumophila
           2300/99 Alcoy]
 gi|295650189|gb|ADG26036.1| Predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Legionella pneumophila
           2300/99 Alcoy]
          Length = 835

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 22/189 (11%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDID 137
           I G+ +  L  + N +  L+R D L+ + N   F   L          EK L+++  D+D
Sbjct: 390 IYGTDITPLKNTQNAMLNLTRRDTLTQIANRQYFEEKLIEKIYEHHLKEKSLALLLIDLD 449

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND  GHP GDK++  +++++        F+ RLGG+EF       +   A  +A 
Sbjct: 450 NFKIVNDTLGHPTGDKLLMAVTNRMTRCLRANDFIARLGGDEFIVLLDQCNTDTAVKVAE 509

Query: 198 DLRKIIENSQINISSGP----SIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKS 250
            +        IN+   P      H+TI+A I    + E     S ++  AD A+Y +KK+
Sbjct: 510 KI--------INVLGKPFQFDEYHMTITASIGIAIYPETSEIASDLLKYADIAMYQSKKT 561

Query: 251 GRNRVVCFS 259
           G+N+   FS
Sbjct: 562 GKNKCTVFS 570


>gi|264677129|ref|YP_003277035.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262207641|gb|ACY31739.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 352

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 11/183 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFK 140
           ++  EL ++  +++++  +D L+GL+N         A I++    +  L+++  D+D+FK
Sbjct: 159 TVSAELHLANQKLNEMVELDALTGLVNRRGLDRMLHAEIAAARRESRPLTLMLCDLDHFK 218

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GH  GD+ +  +   L  V   P     R GGEEFA     +    +   A  L
Sbjct: 219 HFNDTYGHVQGDECLKQVGRLLREVCVRPRDIAARYGGEEFAMILPNTPRSGSMTFARAL 278

Query: 200 RKIIENSQINIS-SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
            ++++  +I    +   I +T+S GI      E  S  +++ RAD+ALY AK  GRNR  
Sbjct: 279 GQMLKFLKIRPPGAAEDIPLTLSGGITTCIPDEHTSAESMLMRADEALYAAKSQGRNRFF 338

Query: 257 CFS 259
            F 
Sbjct: 339 SFE 341


>gi|251790708|ref|YP_003005429.1| diguanylate cyclase [Dickeya zeae Ech1591]
 gi|247539329|gb|ACT07950.1| diguanylate cyclase [Dickeya zeae Ech1591]
          Length = 241

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 4/151 (2%)

Query: 107 DCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+ + N SA I  +      E+ +++  DID+FKQ+ND +GHP GD VI  L  ++  
Sbjct: 84  DPLTDVFNRSAIIDLVDHALEQEQAALIVLDIDHFKQVNDAYGHPTGDAVICALIARIRE 143

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           +      +GR+GGEEF     G +   A  +A  +   + ++ +     P   +T S G+
Sbjct: 144 LLQGKGSIGRVGGEEFTILLDGYTLMAAVDIAEHIHASLNHTALE--PLPEYQVTASFGV 201

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +          +   AD ALY AK  GRNRV
Sbjct: 202 SWAPPHTSFDMLYGTADAALYRAKHQGRNRV 232


>gi|253701124|ref|YP_003022313.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Geobacter sp. M21]
 gi|251775974|gb|ACT18555.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Geobacter sp. M21]
          Length = 869

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/193 (29%), Positives = 99/193 (51%), Gaps = 27/193 (13%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           + E  ++  RI  L+  D ++ L N  + ++ LG        ++ +L+++F D+D FK I
Sbjct: 422 MNEQELNEQRIEYLAHYDTVTKLPNRFSLMARLGQALELAKRFSSRLAVIFIDLDRFKNI 481

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILANDLRK 201
           ND+ GH +GD+++  ++ +L     +   V RLGG+EF     L +S   A   A+ +RK
Sbjct: 482 NDSLGHHIGDRLLFQVAGRLQDTIRSADIVARLGGDEFVVVLPLINSNISA---AHAVRK 538

Query: 202 I---------IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           I         +E+ ++NI+  PSI I++          E +  ++  AD A+Y AK +GR
Sbjct: 539 IQQTLSQGYTVESHELNIT--PSIGISVYP-----TDGETVQELMKNADLAMYHAKSAGR 591

Query: 253 NRVVCFSDIENNT 265
           N    F+   N T
Sbjct: 592 NSYQFFTQEMNLT 604


>gi|153216703|ref|ZP_01950578.1| chemotaxis protein [Vibrio cholerae 1587]
 gi|124114153|gb|EAY32973.1| chemotaxis protein [Vibrio cholerae 1587]
          Length = 605

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 82/158 (51%), Gaps = 12/158 (7%)

Query: 107 DCLSGLLNHSAFISSL--------GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           D L+GL N ++F             S NEK    I   DID FK IND++GH  GD ++ 
Sbjct: 445 DFLTGLPNRNSFFQHAELIFNLLNNSVNEKDNTCIAILDIDKFKDINDSYGHVYGDSILK 504

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++D L   F     + R+GGEEF      ++   A  +    R+IIE    N+S   ++
Sbjct: 505 QMADLLSKQFRDIDILARMGGEEFIILLKATNLPLAFKIIERCREIIEKHSFNLSD-ETV 563

Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           ++TISAG+A+   + + +   I+ AD  LY +K+ GRN
Sbjct: 564 NLTISAGLAQFSKEYKTLDEWIHAADCKLYESKRCGRN 601


>gi|86749290|ref|YP_485786.1| putative GAF sensor protein [Rhodopseudomonas palustris HaA2]
 gi|86572318|gb|ABD06875.1| diguanylate cyclase with GAF sensor [Rhodopseudomonas palustris
           HaA2]
          Length = 812

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/161 (32%), Positives = 80/161 (49%), Gaps = 12/161 (7%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N +AF       ++ L    E  ++   D+D FKQ+ND FGHP GD+++
Sbjct: 645 LAHHDLLTGLANRAAFDETVETAVARLQRNGEPFTLFMLDLDRFKQVNDTFGHPAGDQLL 704

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE--QEAAILANDLRKIIENSQINISSG 213
              + +L         + RLGG+EFA    G+ +  + A  LA  + ++I  SQ     G
Sbjct: 705 REAAQRLRSSVRKTDILARLGGDEFAIVQFGAGDRFKAAKGLAERIVRLI--SQPFDLGG 762

Query: 214 PSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
             + + IS GIA         + ++  AD ALY  K  GRN
Sbjct: 763 AQVSVGISIGIAIAPHAATDAAALLKMADVALYAVKSEGRN 803


>gi|320450268|ref|YP_004202364.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Thermus
           scotoductus SA-01]
 gi|320150437|gb|ADW21815.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Thermus
           scotoductus SA-01]
          Length = 549

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 83/155 (53%), Gaps = 8/155 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           ++  L+  D L+ LLN  AFI      L S NE  ++ + D+D FK +ND  GH VGD +
Sbjct: 129 KLEHLATYDPLTQLLNRRAFIEKVEGELISVNEGRALAYIDLDRFKMVNDLLGHQVGDSI 188

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +A L  +L         VGR+GG+EFAA    ++E EA      L   I N +I++   P
Sbjct: 189 LAELGRRLQAALPQ-AIVGRMGGDEFAAWYPAAAESEAKAKGKLLLDAI-NMEIHVQGQP 246

Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAK 248
            +H+  S G+A    H   +S ++ RAD A+Y AK
Sbjct: 247 -VHLEGSMGVALFPDHGATLSELLRRADLAMYRAK 280


>gi|302523746|ref|ZP_07276088.1| conserved hypothetical protein [Streptomyces sp. AA4]
 gi|302432641|gb|EFL04457.1| conserved hypothetical protein [Streptomyces sp. AA4]
          Length = 901

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 7/165 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYN--EKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           R++  +  D L+ L N +  +  L   +  E  +++F D+D FK IND+ GHPVGD+V+ 
Sbjct: 480 RLAHEATHDPLTRLANRTLVLDRLDRRDGAESAAVLFLDLDKFKLINDSLGHPVGDQVLR 539

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPS 215
              ++L    G    VGRLGG+EF      ++   +  + A  LR ++  S+     G  
Sbjct: 540 IAGERLRRATGPDDVVGRLGGDEFVVVTSATTGPAQVGVFAAHLRSVL--SEPVSVHGRQ 597

Query: 216 IHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +H+  S GI   E   +     ++  AD A+Y AK  GR R   F
Sbjct: 598 LHLDASMGIVLVEPDDRRTAEDLLRDADVAMYQAKSRGRGRFEFF 642


>gi|186474211|ref|YP_001861553.1| diguanylate cyclase [Burkholderia phymatum STM815]
 gi|184196543|gb|ACC74507.1| diguanylate cyclase [Burkholderia phymatum STM815]
          Length = 603

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 11/181 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           +  L    + +  L+  D L+GL N   F+  L           E+L+++F D++ FKQI
Sbjct: 397 MDALHSKQHELVHLASHDGLTGLPNRMLFMQKLEEAIDRARVTGERLAVLFIDLNRFKQI 456

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRK 201
           ND +GH VGD V+A ++ +L  V      V RLGG+EF     G    EAA ++A  + +
Sbjct: 457 NDQYGHSVGDDVLAIVAGRLRQVLHAGDLVARLGGDEFIVLVKGERSAEAAPVIAARIVR 516

Query: 202 IIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            I++ ++ I   P + +  S GI++     +    ++  AD A+Y AK  G    + + +
Sbjct: 517 TIDD-ELLIGDQP-MAVGASIGISQFPSDGDSAEALLLNADAAMYAAKSGGSGAWLSYRE 574

Query: 261 I 261
           +
Sbjct: 575 L 575


>gi|116694068|ref|YP_728279.1| signal transduction protein [Ralstonia eutropha H16]
 gi|113528567|emb|CAJ94914.1| predicted signal transduction protein containinga membrane domain,
           an EAL and a GGDEF domain [Ralstonia eutropha H16]
          Length = 1085

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 91/169 (53%), Gaps = 11/169 (6%)

Query: 100 ISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  L+  D L+GL N +       A +    S+ E+++++  D+D+FK IND+ GHPVGD
Sbjct: 639 IRHLALHDPLTGLPNRAELSERAQALLLYARSHGERVALLLLDLDHFKHINDSLGHPVGD 698

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS 211
            V+  ++D+L         V R+GG+EF     G   + EA ++A  ++  + N ++  +
Sbjct: 699 DVLRTMADRLKGAVRQGDLVARMGGDEFGVVLGGLRHDSEAELIAAKIQARV-NEELQ-A 756

Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            G  + +T S G+A      + ++ ++  AD A+Y AK  GR ++  F+
Sbjct: 757 GGQRLRVTPSIGMAIYPDDGDSLTELLKAADSAVYAAKHDGRAQLCRFA 805


>gi|91779457|ref|YP_554665.1| diguanylate cyclase [Burkholderia xenovorans LB400]
 gi|91692117|gb|ABE35315.1| Putative diguanylate cyclase (GGDEF domain) [Burkholderia
           xenovorans LB400]
          Length = 524

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 15/212 (7%)

Query: 55  LTPFYGLEYIL-VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           L P++   +I  V  L+   + + +S LL       L++   +   + +L+  D L+GL 
Sbjct: 301 LAPWWHRNWITAVLTLTFGAVFVMVSWLLSLA----LRDKLRAQAALVRLAATDPLTGLG 356

Query: 114 NHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVV 165
           N     + L           + LS +F DID+FKQ ND +GH  GD+ +  +++ +   V
Sbjct: 357 NRRVLDTRLDEEWRRARRSGQPLSALFIDIDHFKQFNDAYGHASGDEALVAVAECISAAV 416

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                 V R GGEEFA     +S + A  +A  +R+ ++   +    G S  +T+S G A
Sbjct: 417 RRWVDVVARYGGEEFAVILPDTSAEGALKVAEKIRRKVQGQDVIHGDGESATVTVSVGCA 476

Query: 226 ERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
                E      ++  AD+ LYVAK +GRNRV
Sbjct: 477 TCVPAEGANALDLLAAADRQLYVAKAAGRNRV 508


>gi|24215404|ref|NP_712885.1| two-component response regulator [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45657180|ref|YP_001266.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24196523|gb|AAN49903.1| two-component response regulator [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45600418|gb|AAS69903.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 409

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 11/168 (6%)

Query: 99  RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I ++S++D L+GL N          F+     Y   L+++  D+DY K+IND++GH  G
Sbjct: 222 QIEKISKVDELTGLYNRRYLIEQFELFLKRAQRYRFSLAMIILDMDYLKEINDSYGHLAG 281

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D  +  +SD +           R+GG+EF        +++   L  +LR  +   +++  
Sbjct: 282 DLSLRTISDVMKQRVRATDICSRIGGDEFCILLDAIKKEDLVQLCENLRMEVAEKELSYR 341

Query: 212 S--GPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
           +  G  + IT+S G       E  S   I +  D ALY +KK GRNRV
Sbjct: 342 TQKGSPVKITVSIGACIFGPGEEFSFDDIYHSIDSALYESKKKGRNRV 389


>gi|27365080|ref|NP_760608.1| GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|37680868|ref|NP_935477.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|320155463|ref|YP_004187842.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
 gi|27361226|gb|AAO10135.1| GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|37199617|dbj|BAC95448.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|319930775|gb|ADV85639.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
          Length = 362

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 90/165 (54%), Gaps = 12/165 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSA---FISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVG 151
           +++  LS  D ++G LN      F+      +++    SI   DID+FKQ+ND +GH VG
Sbjct: 171 SKLRYLSTRDVMTGALNRHQLDLFLQRALDGHKRYTASSIAIIDIDFFKQVNDRYGHDVG 230

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQINI 210
           D+VI  + + +         + RLGG+EF      +S   A ++ + L +K+ + +    
Sbjct: 231 DEVINLVVETIQHNTREVDLLFRLGGDEFLLLFENTSASSALLIVSHLCQKVRKQAYPKH 290

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S     +T+SAGIAE    + + + + RAD ALY +K++GR+RV
Sbjct: 291 AS-----VTLSAGIAECLEGDDVESWLKRADVALYQSKENGRDRV 330


>gi|312879045|ref|ZP_07738845.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM
           12260]
 gi|310782336|gb|EFQ22734.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM
           12260]
          Length = 626

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 81/159 (50%), Gaps = 15/159 (9%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F+  L           E+L ++F D+D+FK+IND+ GH VGD+++A ++
Sbjct: 463 DALTGLPNRPLFLDRLDQALARAERTGERLGVLFMDLDHFKEINDHLGHLVGDRILAEVA 522

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHI 218
            +L         V R+GG+EF     G    E A  A    +I+E  +   +    ++ +
Sbjct: 523 LRLKETLRAQDTVARMGGDEFTFLLPGLGRPEDAERAAG--RILEAFRAPFVLEDTAVSV 580

Query: 219 TISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           T S GIA   E  H      ++ RAD ALY AK  GRNR
Sbjct: 581 TASLGIALFPE--HGTGTLDLMRRADLALYQAKSRGRNR 617


>gi|289623525|ref|ZP_06456479.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289649808|ref|ZP_06481151.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330867720|gb|EGH02429.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 523

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 18/178 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYN-EKLSIVFFDIDYFKQIND 144
           EL I+ N +  ++  D L+ + N   F ++L       S N   ++I+  DID+FKQ ND
Sbjct: 328 ELNIARNELEIIAHTDSLTHMANRRCFDAALQQEWARASRNTATIAIILLDIDWFKQYND 387

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDL 199
            +GH  GD  +     Q+  + G  +        R GGEEF      +    A  +A  +
Sbjct: 388 TYGHLQGDDCL----KQVAGLIGNSLDRAGDIAARYGGEEFVILLPETDLAGALKIAEKI 443

Query: 200 RKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           R  +E ++I  S+ P   +TIS+G+       K+  +  +  AD+ LY+AK  GRNRV
Sbjct: 444 RSSVETNRIEHSASPLGKLTISSGVVSINAAEKDGHTAALAEADRLLYLAKTKGRNRV 501


>gi|269964362|ref|ZP_06178604.1| c-di-GMP phosphodiesterase A-related protein [Vibrio alginolyticus
           40B]
 gi|269830859|gb|EEZ85076.1| c-di-GMP phosphodiesterase A-related protein [Vibrio alginolyticus
           40B]
          Length = 786

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 125/256 (48%), Gaps = 30/256 (11%)

Query: 29  IYFSIFFSIFIA---TVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLLL 82
           ++  + FS  +A   T+  I  +   Y+ L P   L+  L E   N    I  +  +  +
Sbjct: 257 VWLELAFSFGVAAFFTITLIILVLYRYV-LRPVSRLDKQLNELESNQRDNIEKLETNDEI 315

Query: 83  GYISG---SILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFFD 135
           G +S     + +EL + Y +  +L+  D L+ L N   F       L S ++ L +V+ D
Sbjct: 316 GRLSARFFDMYEELNVIYKKTKRLAETDHLTQLANRHRFHELATRELISPSQFLWVVYVD 375

Query: 136 IDYFKQINDNFGHPVGDKVIAFLS-------DQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +D FK +ND +GH +GD ++   S        +L   + +P F  RL G+EF  A L SS
Sbjct: 376 LDNFKYVNDKYGHELGDNLLKVFSSHIKDACQKLSHDYNSPCFAARLSGDEF--AILLSS 433

Query: 189 EQEAA----ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQA 243
            QE      +LA++L K I N   + S+  S  +T S GIA+       I+ ++  AD A
Sbjct: 434 NQEVKRLPDLLASELLKPISNLSSSWSN--SFPVTASVGIAQYPQDGTDIAKLLSSADAA 491

Query: 244 LYVAKKSGRNRVVCFS 259
           +Y AK++G+N+   +S
Sbjct: 492 MYQAKRAGKNQYAYYS 507


>gi|238758370|ref|ZP_04619548.1| hypothetical protein yaldo0001_2590 [Yersinia aldovae ATCC 35236]
 gi|238703493|gb|EEP96032.1| hypothetical protein yaldo0001_2590 [Yersinia aldovae ATCC 35236]
          Length = 534

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 81/157 (51%), Gaps = 10/157 (6%)

Query: 104 SRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           ++ D ++GL N     ++L       +  S +  DID+FK IND++GH VGD+VI  L+ 
Sbjct: 380 AQTDPMTGLYNRRGLATTLEPISQLGQHFSAIALDIDHFKMINDSYGHDVGDEVIKQLAL 439

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
           Q+         + R GGEEF     G S   A  +A+ LR  +E   I         ITI
Sbjct: 440 QIRDSSRDTDILCRSGGEEFLMLLPGISRDVAGQVASRLRHNVETMVI----ADVRPITI 495

Query: 221 SAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S G+A  +  +  P    + +AD+ALY AK+ GRNRV
Sbjct: 496 SLGVAHWDGENGSP-EDALKQADEALYRAKQQGRNRV 531


>gi|226357522|ref|YP_002787262.1| metal dependent phosphohydrolase [Deinococcus deserti VCD115]
 gi|226319513|gb|ACO47508.1| putative metal dependent phosphohydrolase [Deinococcus deserti
            VCD115]
          Length = 1251

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/159 (34%), Positives = 79/159 (49%), Gaps = 8/159 (5%)

Query: 105  RIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            R D L+G+ N      ++    E+       L+I+  DID+FKQIND F HPVGD+V+  
Sbjct: 1093 REDALTGVYNRRFIEENVTIEYERHRNSGQPLAILMVDIDHFKQINDRFSHPVGDEVLRR 1152

Query: 158  LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            ++            +GR GGEEF      S+ ++AA +A  +R  IE    +      + 
Sbjct: 1153 VARIFRETCRANDLIGRYGGEEFLFLLPNSNVRQAAEVAERIRSNIEKYAWH-EIHEDLR 1211

Query: 218  ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +T+S GI    +      +I  AD  LY AK  GRNRVV
Sbjct: 1212 VTLSLGICADTNVVNHEKMISIADAKLYEAKTGGRNRVV 1250


>gi|330888918|gb|EGH21579.1| GGDEF domain-containing protein [Pseudomonas syringae pv. mori str.
           301020]
          Length = 504

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 18/178 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYN-EKLSIVFFDIDYFKQIND 144
           EL I+ N +  ++  D L+ L N   F ++L       S N   ++I+  DID+FKQ ND
Sbjct: 309 ELNIARNELEIIAHTDSLTHLANRRCFDAALQQEWGRASRNTATIAIILLDIDWFKQYND 368

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDL 199
            +GH  GD  +     Q+  + G  +        R GGEEF      +    A  +A  +
Sbjct: 369 TYGHLQGDDCL----KQVAGLIGNSLDRAGDIAARYGGEEFVILLPETDLAGALKIAEKI 424

Query: 200 RKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           R  +E + I  S+ P   +TIS+G+       K+  +  +  AD+ LY+AK  GRNRV
Sbjct: 425 RSSVETNHIEHSASPLGKLTISSGVVSINAAEKDGHTAALAEADRLLYLAKTKGRNRV 482


>gi|317471248|ref|ZP_07930613.1| GGDEF domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901295|gb|EFV23244.1| GGDEF domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 348

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 94/197 (47%), Gaps = 3/197 (1%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISS 121
           +IL+ ++      I  + +   +S ++ ++     NR +S L+  D L+GLL+  AF+  
Sbjct: 150 WILIFSICACFTIILYAAVSSKLSAAVSRQELQDENRSLSTLANYDQLTGLLSRHAFLKR 209

Query: 122 LGSYNEKLSI-VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   ++ V  DID FK +ND +GH  GDK+++  ++ +    G  + V R GGEEF
Sbjct: 210 AEHCQASSAVLVLSDIDDFKVVNDTWGHSCGDKILSETAELIRSFLGGNVDVCRWGGEEF 269

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                 +  ++  +   +L   +            +HIT++ G++          II  A
Sbjct: 270 VFLFRDTPLKDVLVKLQELCDTVAGHTF-CCDDKKLHITMTFGVSPSGEGASPEEIIALA 328

Query: 241 DQALYVAKKSGRNRVVC 257
           D+ +Y  K  G+NRVVC
Sbjct: 329 DRQMYKGKTEGKNRVVC 345


>gi|242278960|ref|YP_002991089.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Desulfovibrio salexigens DSM 2638]
 gi|242121854|gb|ACS79550.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Desulfovibrio salexigens DSM 2638]
          Length = 436

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 22/173 (12%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + + + +D L+G+ N   F       +++ G Y EKL+++F D++ FK++ND +GH  GD
Sbjct: 270 LQEKATLDALTGIPNRYLFFDRLEKSVANAGRYGEKLALLFIDLNDFKRVNDQYGHHAGD 329

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILAND----LRKIIENSQ 207
            V+A ++ +L     +     RLGG+EF       S++E+ A +A+D    L +  E   
Sbjct: 330 MVLAKVAARLKSRLRSADTFARLGGDEFCVLLERPSDRESIARVADDFINCLTEPFEFDD 389

Query: 208 INISSGPSIHITI--SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +  S G SI I+I    G+      EP   ++ +ADQA+Y  K+  ++R  CF
Sbjct: 390 VQCSIGASIGISIYPENGV------EP-EGLVKKADQAMYRVKEQ-KDRKYCF 434


>gi|191172446|ref|ZP_03033987.1| inner membrane protein YcdT [Escherichia coli F11]
 gi|190907330|gb|EDV66928.1| inner membrane protein YcdT [Escherichia coli F11]
          Length = 409

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 13/160 (8%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 239 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 298

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216
           +         + R+GGEEF         + A  LA  +R+ +E     N +  I     +
Sbjct: 299 IGKSIRPDDLLARVGGEEFGVLLTEIDTECAKALAERIRENVERLTGDNPEYAIPQ--KV 356

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            I+I A + ++    P   I   AD ALY AK++GRN+VV
Sbjct: 357 TISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 395


>gi|134293662|ref|YP_001117398.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia vietnamiensis
           G4]
 gi|134136819|gb|ABO57933.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia vietnamiensis
           G4]
          Length = 517

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 88/167 (52%), Gaps = 11/167 (6%)

Query: 96  SYNRISQLSRIDCLSGLLN----HSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFG 147
           +   I  L+R D L+GL N    H+A    L       +  L++++ D+D FK IND  G
Sbjct: 334 TEQHIRHLARHDALTGLPNRHELHAALKRMLSQRPRLPSPALAVMYLDLDGFKSINDRCG 393

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+V+  ++++L           R+GG+EF  A   ++  E+++LA  +   I ++ 
Sbjct: 394 HQAGDEVLMQVAERLARALPPGALAARVGGDEFIVALDDTTMHESSLLATRIIGQI-SAP 452

Query: 208 INISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
             +S G ++ + IS GIA +  H  P   +I +AD ALY AK +G+ 
Sbjct: 453 YTLSIGVTVSLGISIGIALDDGHGNP-DELIRQADSALYDAKSAGKG 498


>gi|71906691|ref|YP_284278.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71846312|gb|AAZ45808.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 585

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 111/222 (50%), Gaps = 17/222 (7%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN-----RISQLSRIDCLSGLL 113
           Y L  +  +  +L I+ +    ++G +  S+   L IS       RI +L+  D L+GL 
Sbjct: 106 YELTGLRKDGSTLPIMVLGSPSVIGGLPASVGTVLDISAQKAAEQRIRELADYDVLTGLP 165

Query: 114 NH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N           +++      +++++F D+D+FK++ND+ GH VGD+++  ++ +L  V 
Sbjct: 166 NRRLLRERFEQLLAAAEREKSEIAVIFLDLDHFKRVNDSLGHSVGDELLCEVARRLDSVV 225

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIA 225
                + RLGG+EF  A  G     A  +A   R+++E  S+    +G  + +T S GI+
Sbjct: 226 RRIDTLARLGGDEFIFAMPGFHTAAAVEVA---RRLVEVFSRPFEVAGHELTVTPSLGIS 282

Query: 226 ERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              H    + T++  AD A+Y AK+ GRN    +S   N T 
Sbjct: 283 IYPHDGRDLETLLRNADTAMYRAKEMGRNAFQFYSSEMNTTT 324


>gi|42779774|ref|NP_977021.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987]
 gi|42735691|gb|AAS39629.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987]
          Length = 568

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQAP- 251

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 252 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304


>gi|54298631|ref|YP_125000.1| hypothetical protein lpp2695 [Legionella pneumophila str. Paris]
 gi|53752416|emb|CAH13848.1| hypothetical protein lpp2695 [Legionella pneumophila str. Paris]
          Length = 835

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 90/189 (47%), Gaps = 22/189 (11%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDID 137
           I G+ + +L  + N +  L+R D L+ + N   F   L          EK L+++  D+D
Sbjct: 390 IYGTDITQLKNTQNAMLNLTRRDTLTQIANRQYFEEKLIEKIYEHHLKEKSLALLLIDLD 449

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND  GHP GDK++  +++++        F+ RLGG+EF       +   A  +A 
Sbjct: 450 NFKIVNDTLGHPTGDKLLMAVTNRMTRCLRANDFIARLGGDEFIVLLDQCNTDTAVKVAE 509

Query: 198 DLRKIIENSQINISSGP----SIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKS 250
            +        IN+   P      H+TI+A I    + E       ++  AD A+Y +KK+
Sbjct: 510 KI--------INVLDKPFQFDDYHMTITASIGIAIYPETSEIARDLLKYADIAMYQSKKT 561

Query: 251 GRNRVVCFS 259
           G+N+   FS
Sbjct: 562 GKNKCTVFS 570


>gi|89095154|ref|ZP_01168079.1| sensor histidine kinase [Oceanospirillum sp. MED92]
 gi|89080585|gb|EAR59832.1| sensor histidine kinase [Oceanospirillum sp. MED92]
          Length = 376

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 93/189 (49%), Gaps = 27/189 (14%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDY 138
           S+  E  I+   + +LS ID L+ + N  +F          +S G Y+  L+ +F D+D+
Sbjct: 178 SVCIENCINQENLHRLSSIDMLTKVHNRRSFEQEIVRELSRASRGGYH--LACLFLDLDH 235

Query: 139 FKQINDNFGHPVGDKVIA----FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           FK +NDNFGH  GD+V+     FL+ QL         V R GGEEFA       +  A  
Sbjct: 236 FKMVNDNFGHQTGDRVLRTVGLFLNKQLRKT----DIVARYGGEEFAVLLPNCDKAGALE 291

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIA-------ERCHKEPIS-TIIYRADQALYV 246
           +A  LR+ +        +     +T S G++        + H + +S  +I  AD+A+Y 
Sbjct: 292 IAEGLRQKLSKLIFRDEASKPFRMTTSVGVSLCKPDEYPKAHLDDVSYQLIQSADKAVYH 351

Query: 247 AKKSGRNRV 255
           +K +GR+RV
Sbjct: 352 SKHNGRDRV 360


>gi|327193425|gb|EGE60324.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 735

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 90/180 (50%), Gaps = 15/180 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDN 145
           +L  +  R+  LS  D L+GL N   F+  + S        ++L ++  D+D FK+IND 
Sbjct: 293 KLVRARQRLEHLSLHDALTGLPNRR-FVDQMISQPPRPDPQDRLILIHIDLDRFKEINDT 351

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIE 204
            GH  GD V+   + +L  + G      R+GG+EF  A+  +  E +AA LA   R+I++
Sbjct: 352 KGHAGGDMVLQTTASRLADLTGPNDVAARIGGDEFVFASWSTDPEPKAAELA---RQIVD 408

Query: 205 NSQINI-SSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             Q  I   G    +  S G+A   +      +  ++  AD ALY AKK+GR R   F++
Sbjct: 409 ALQRTIFIDGAGYVVGASVGVAWETKSARDRDLGQLLLNADLALYEAKKAGRGRAAVFTE 468


>gi|315646150|ref|ZP_07899270.1| diguanylate cyclase with GAF sensor [Paenibacillus vortex V453]
 gi|315278349|gb|EFU41665.1| diguanylate cyclase with GAF sensor [Paenibacillus vortex V453]
          Length = 663

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 67/130 (51%), Gaps = 10/130 (7%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  DID FK +ND FGH  GDK++  +S  +           R GGEE A    G   
Sbjct: 530 SLIVVDIDEFKLVNDTFGHQRGDKILKQVSSIVKSTIRHSDIPARWGGEELAVYLPGLGI 589

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYV 246
           Q+A  +A  +R       + ++      +T+S G++E      K  + ++ YRAD ALY 
Sbjct: 590 QQAVQVAERIR-------LRVAEETDPRVTVSCGVSEWNWTNDKISVESLFYRADMALYE 642

Query: 247 AKKSGRNRVV 256
           AK SGRNR+V
Sbjct: 643 AKNSGRNRIV 652


>gi|302342228|ref|YP_003806757.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfarculus baarsii DSM 2075]
 gi|301638841|gb|ADK84163.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfarculus baarsii DSM 2075]
          Length = 966

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 86/174 (49%), Gaps = 11/174 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI+  +  D L+GL N   F       I+        L+++F D+D FK IND+ GH VG
Sbjct: 532 RITHQAYHDALTGLPNRQLFNDRLAMAIAQAHRGGHGLALLFLDLDNFKNINDSLGHAVG 591

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++  ++ +L         V RLGG+EF     G+S+ +   +    R+I+++     +
Sbjct: 592 DMLLQAVAQRLTRWLREEDTVARLGGDEFVMLIQGASDPD--YIMQVARRILDSMSQPFA 649

Query: 212 SGP-SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            GP  +++T S G+    H      T++  AD A++ AK  GRN +  F+   N
Sbjct: 650 VGPHELYVTASIGVTIHPHDGHDAQTLVANADLAMFRAKDEGRNNIKLFTPAMN 703


>gi|300310777|ref|YP_003774869.1| GGDEF family protein [Herbaspirillum seropedicae SmR1]
 gi|300073562|gb|ADJ62961.1| GGDEF family protein [Herbaspirillum seropedicae SmR1]
          Length = 352

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 39/203 (19%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------------NEKLS-------- 130
           +F +Y  +   S  D L+GL N   F      Y              +E+          
Sbjct: 142 VFCNYQSLLDYSERDALTGLFNRKTFDEQFTRYAFAIAPHEAHSMEQDERRHDSAEAQDD 201

Query: 131 ------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
                 +   DID+FKQ+ND +GH  GD+V+  +++ L   F +   + R GGEEF    
Sbjct: 202 EPKGHWLAVVDIDHFKQVNDRYGHLYGDEVLILVANILRASFRSHDRIFRFGGEEFVILL 261

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSG--PSI-HITISAGIAERCHKEPISTIIYRAD 241
             ++        +D RKI +  + N+     P +  +T+S G      + P+  I+  AD
Sbjct: 262 RSTT-------LSDARKIFDRFRQNVQEYDFPQVGKVTVSLGFVGIARETPV-VILGHAD 313

Query: 242 QALYVAKKSGRNRVVCFSDIENN 264
           QALY AKK+GRNR+  + ++ N+
Sbjct: 314 QALYHAKKTGRNRICYYQELVNS 336


>gi|66044410|ref|YP_234251.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63255117|gb|AAY36213.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 748

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 21/167 (12%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N +  ++ L        S  E+ +++F D+D FK +ND+ GH  GD+++  ++
Sbjct: 320 DELTSLFNRAYLMNELTTAFETRKSRYERATVLFLDLDGFKVVNDSMGHLAGDQLLKGVA 379

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINIS---SGP 214
           ++L     +   + R+GG+EFA   +G  + E A+      K+ E   SQ+N +    G 
Sbjct: 380 NRLQTCVRSNDVLARIGGDEFAILLMGKDQPETAV------KMAERIVSQLNTAIQIEGQ 433

Query: 215 SIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I I+ S GI  A   H +P   ++  AD A+Y AKK GR R   F+
Sbjct: 434 DIFISCSIGIVSAGESHTKP-EELLRDADVAMYSAKKQGRGRWSIFN 479


>gi|58617050|ref|YP_196249.1| response regulator PleD [Ehrlichia ruminantium str. Gardel]
 gi|58416662|emb|CAI27775.1| Putative regulatory component of sensory transduction system
           [Ehrlichia ruminantium str. Gardel]
          Length = 461

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 12/160 (7%)

Query: 107 DCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+G  N        H+    SL   ++ +S++  DID+FK++ND FGH +GD+++   
Sbjct: 297 DPLTGCFNRRYFDMHFHNMITESLCK-DKTISLMILDIDHFKEVNDTFGHTIGDELLRQF 355

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
            +++         + R GGEEF      +    A      +  ++  +    S G  IH 
Sbjct: 356 KNRVSDNIRITDLLARFGGEEFVIVLPDTDINTAYQTGLRILSLVGETPFKTSIG-DIHK 414

Query: 219 TISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256
           T+S GI E  H +   I  +I RAD+ LY AK +GRN++V
Sbjct: 415 TVSIGITEMSHSDINNIKQLIDRADKCLYEAKNTGRNKIV 454


>gi|313496735|gb|ADR58101.1| Diguanylate cyclase [Pseudomonas putida BIRD-1]
          Length = 427

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 124/280 (44%), Gaps = 37/280 (13%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTF---MIYFSIFFSIFIATVI--FIANIFLFYIGL 55
           + +S  + L  WL  E    +   H      + + +F  +FI  V+    A   L    L
Sbjct: 141 LQQSYPEALLTWLA-EIRWPALHGHWMSLIQMVYPLFLGVFILLVVQYLRAPRPLHAAQL 199

Query: 56  TPFYGLEYILVENLSL-VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
               G+ ++L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL  
Sbjct: 200 IGLLGIFWMLPQTFILPFTLNIMCSQVMLMIAAAVAHEAY-------QMAFRDELTGLPG 252

Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
             A    +        I   D+D+FK+ ND  GH VGD+V+  ++ +L  V        R
Sbjct: 253 RRALNERMQRLGRNYVIAMTDVDHFKKFNDTHGHDVGDQVLRLVASRLSKV-TGGGRAYR 311

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-------------------SSGPS 215
            GGEEFA    G +  E       +R++I N  +++                   S+G +
Sbjct: 312 YGGEEFALVFAGKTAAECVPHVEAVREVIANYVMHLRDQHNRPQDDTAGRQRRAGSTGGT 371

Query: 216 IHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRN 253
           + +TIS G+AER   H+ P   ++  ADQALY AK +GRN
Sbjct: 372 VSVTISIGVAERQADHRNP-EAVLKSADQALYSAKGAGRN 410


>gi|295093268|emb|CBK82359.1| diguanylate cyclase (GGDEF) domain [Coprococcus sp. ART55/1]
          Length = 365

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 84/181 (46%), Gaps = 12/181 (6%)

Query: 86  SGSILKELFISYNR-ISQLSR--IDCLSGLLNHSAFISSLGSYNEKLS-------IVFFD 135
           + ++++ +  SYNR ++ +S   +D ++GL N  +F  SL    E +        +  FD
Sbjct: 184 TKALMESIAGSYNRQVTLMSELMVDPMTGLYNRRSFEESLDKEIENVEQTGAKSYVTIFD 243

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK++ND +GH  GD VI  L   +           R GGEEF          +   +
Sbjct: 244 IDHFKEVNDTYGHSNGDIVIKALCKMMKEKSKDMGLAFRYGGEEFVILFHDVELSKVMNV 303

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             D+R        +  +   I  T S G+AE    E       RAD ALY AK+SGRNR 
Sbjct: 304 VEDIRTEFRCYYFHFMNKDGI--TCSCGVAEYTKGESSKAWFNRADSALYKAKESGRNRT 361

Query: 256 V 256
           V
Sbjct: 362 V 362


>gi|269959755|ref|ZP_06174134.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835509|gb|EEZ89589.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 414

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 24/176 (13%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           QL+  D L+ + +  A    L     K +I   D+D+FK+ ND +GH  GD V+  ++ +
Sbjct: 236 QLAFTDSLTLIPSRRALDLELKHMGRKFTIAMLDVDHFKKFNDTYGHDTGDDVLKMVASR 295

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII---------------ENS 206
           L+   G    V R GGEEF     G   ++      ++R++I               +N 
Sbjct: 296 LMKTQGGAK-VYRFGGEEFTIVFKGKYTEDCEAHLEEVRELIAQYEMILRDQDTRPDDNK 354

Query: 207 QINISSG------PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           Q     G       ++ +T S G+A+ R  + P + +I  AD+ALY AKK+GRN V
Sbjct: 355 QGRKKRGSADSKKKTVSVTASFGVADSRSARNP-ADVIKLADEALYKAKKAGRNCV 409


>gi|254509373|ref|ZP_05121459.1| ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219547699|gb|EED24738.1| ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 411

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 94/202 (46%), Gaps = 24/202 (11%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDID 137
           IS ++  +SG IL    +S +   +L+  D L+ +    A  + L     K +I   DID
Sbjct: 214 ISSMMFSLSGVILLIYLLSASY--ELAFKDLLTDIPGRLALETDLKYLGRKYTIAMIDID 271

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK  ND +GH  GD V+  ++ ++  V G    + R GGEEF     G    +A     
Sbjct: 272 HFKAFNDTYGHDTGDDVLRLVASKMKHVGGGAR-IYRYGGEEFTVLFKGKWADQARDHLE 330

Query: 198 DLRKIIENSQINI--------------------SSGPSIHITISAGIAERCHKEPISTII 237
            LR  IE+ ++ +                     +G  + ITIS G+ +      +  ++
Sbjct: 331 ILRASIESYEMVLRDQDTRPKDHKAGQKKRKGSKNGDVVTITISIGVCDSRETSEVKAVM 390

Query: 238 YRADQALYVAKKSGRNRVVCFS 259
             AD+ALY AKKSGRN+ VC S
Sbjct: 391 KCADEALYRAKKSGRNQ-VCLS 411


>gi|152992432|ref|YP_001358153.1| hypothetical protein SUN_0838 [Sulfurovum sp. NBC37-1]
 gi|151424293|dbj|BAF71796.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 392

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 23/178 (12%)

Query: 96  SYNRISQLSRI----------DCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYF 139
           ++++++QL+ +          D L+GL   S F   L   +EKL       +   DID F
Sbjct: 221 TFSKVTQLNEVNQTLKNKIDHDPLTGLYRKSFFDIKL---HEKLDERKEAVLAIIDIDDF 277

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+INDN+GH VGD V+   +D +           R GGEEF      +   +       +
Sbjct: 278 KKINDNYGHLVGDMVLLEFTDLIRKNMRANDLFARWGGEEFLILFECTDTGKIVKKIEQI 337

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R+IIE            H+T S G++     + + +++ RAD ALY+AKK+G+N++V 
Sbjct: 338 RQIIEKHPFKTIG----HLTASFGLSTSLKNDTLESLLERADSALYIAKKTGKNKLVV 391


>gi|126667495|ref|ZP_01738466.1| GGDEF domain protein [Marinobacter sp. ELB17]
 gi|126628087|gb|EAZ98713.1| GGDEF domain protein [Marinobacter sp. ELB17]
          Length = 147

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 70/145 (48%), Gaps = 14/145 (9%)

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT----PMFVG 173
            +    +  E LS++  DID+FK +ND  GH VGD V+        V+F         V 
Sbjct: 1   MVKKAKAAGEPLSVIALDIDHFKAVNDKHGHHVGDSVLV----DTAVIFQQYSQDGDLVA 56

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEP 232
           + GGEEF    L +   EA   A  +R+      ++  +G  + IT+S G+AE     E 
Sbjct: 57  QFGGEEFVTLLLCADHAEARSCAERIRE-----GVDAGNGLDVRITVSIGVAEVNTAMES 111

Query: 233 ISTIIYRADQALYVAKKSGRNRVVC 257
           +     RAD+ALY AK  GRN V C
Sbjct: 112 VENAFSRADKALYQAKALGRNHVCC 136


>gi|126658584|ref|ZP_01729731.1| response regulator receiver domain protein (CheY-like) [Cyanothece
           sp. CCY0110]
 gi|126620171|gb|EAZ90893.1| response regulator receiver domain protein (CheY-like) [Cyanothece
           sp. CCY0110]
          Length = 335

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 33/197 (16%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQIN 143
           EL  +Y  + Q++  D L+G+ N  + I ++G         Y    SI+  DID FK IN
Sbjct: 137 ELIKAYKEMQQIAATDELTGIANRRS-IFNIGKQEFERSQRYKSPFSILMIDIDKFKSIN 195

Query: 144 DNFGHPVGDKVIAFL-------------------SDQLVVVFGTPMFVGRLGGEEFAAAA 184
           D +GH VGD+ +  +                    ++ +   G    +GRLGGEEF    
Sbjct: 196 DTYGHDVGDEALKMMVKITLNCLRKVDHIGRLETEEEALAKKG---HLGRLGGEEFVVIL 252

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQA 243
             ++ + A   A  + + +    + +    ++ IT+S GI     K + I  I+ RAD A
Sbjct: 253 PHTNLKGAYKAAQRVCEAMPQETLQVEDK-TVSITVSIGIGTYDPKDQKIDDILKRADLA 311

Query: 244 LYVAKKSGRNRVVCFSD 260
           L+ AKK+GRNRV    +
Sbjct: 312 LFAAKKNGRNRVAIMHE 328


>gi|160901332|ref|YP_001566914.1| diguanylate cyclase [Delftia acidovorans SPH-1]
 gi|160366916|gb|ABX38529.1| diguanylate cyclase [Delftia acidovorans SPH-1]
          Length = 386

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 99/189 (52%), Gaps = 16/189 (8%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLS---I 131
           S+   + +  ++++L     ++  LSRID L+ L +   +     ++L  Y +  +   +
Sbjct: 155 SVFSSWSTRQLVRKLARQNVKLQVLSRIDPLTTLYSRDYWWQKARAALRDYRQTQASACL 214

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK+IND+FGH VGD+V+  +   +     +    GR GG+EFA   + +   +
Sbjct: 215 LIVDIDHFKRINDSFGHTVGDEVLQAIGLTIRHCLRSHDAAGRYGGDEFAVLCMHTQLDD 274

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVA 247
           A  +A  +R  +  SQ+ +   P + ++ S G+A     +P    +   I  AD ALY A
Sbjct: 275 AYAVALRIRNQL--SQLRVREHPQLRVSASIGVAA---ADPSFLSVKDWINAADSALYSA 329

Query: 248 KKSGRNRVV 256
           K +GR++V+
Sbjct: 330 KDAGRDQVI 338


>gi|73541425|ref|YP_295945.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia eutropha JMP134]
 gi|72118838|gb|AAZ61101.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia eutropha JMP134]
          Length = 663

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 94/182 (51%), Gaps = 11/182 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYF 139
           G+ + +     +++++ S  D L+G+ N +       A+ +   S   + +I   D+D F
Sbjct: 210 GADVTKWAQKLHQLTEQSLTDPLTGVGNRALIRNRVEAYFTGDASQRGRFAIALMDLDGF 269

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND+ GH +GD ++  LS +LV    +   V RLGG+EF       S +EAA+    L
Sbjct: 270 KKINDSLGHEIGDILLKELSQRLVATVRSRDTVARLGGDEFVILLDDVSSEEAAV--GML 327

Query: 200 RKIIENSQINIS-SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +I+   +     +G  + +T S G+A     +E  + ++ RAD+A+Y AK  G NR   
Sbjct: 328 EQIMRVCRQPFHLAGCQVRVTTSIGLAFASGVRETDAQLLRRADRAMYEAKAQGNNRYCL 387

Query: 258 FS 259
           +S
Sbjct: 388 YS 389


>gi|77359897|ref|YP_339472.1| hypothetical protein PSHAa0951 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874808|emb|CAI86029.1| putative orphan protein; putative conserved domain
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 1002

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 15/169 (8%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           S  ++ QL+  D L+GL N + F         ++  G Y    ++ +FD+D FK+IND  
Sbjct: 562 SQRKMEQLAYFDTLTGLANRTFFRMQLRKSMALAERGHY--AFALFYFDLDEFKRINDTL 619

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIEN 205
           GH  GD+++  ++++L         + RLGG+EFA    G   QE A  +AN ++K + N
Sbjct: 620 GHNAGDQLLVEVANRLKQRLRAEDTIARLGGDEFAILLSGIEHQEHATQVANTIQKTL-N 678

Query: 206 SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
             I + S   I I+ S GI    +  +    ++  AD A+Y AK  GRN
Sbjct: 679 EPIQLGSNEVI-ISASIGITMAPYDSQEEDQLLKHADLAMYEAKAKGRN 726


>gi|145219683|ref|YP_001130392.1| diguanylate cyclase [Prosthecochloris vibrioformis DSM 265]
 gi|145205847|gb|ABP36890.1| diguanylate cyclase [Chlorobium phaeovibrioides DSM 265]
          Length = 413

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 85/181 (46%), Gaps = 19/181 (10%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           L E+FI+          D  +GL N+  F       +     +   ++I   DID+FK+ 
Sbjct: 235 LDEIFIT----------DEKTGLFNYRHFKEHLIIDVERAKRFRTSVTIAMIDIDHFKRY 284

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD+V+  L+  +     +     R GGEEFA     +    A  +++ LRKI
Sbjct: 285 NDANGHIAGDRVLEILAGIIRKQSRSSDIPSRFGGEEFAILFPNTDTHTAREISDRLRKI 344

Query: 203 IENSQI-NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260
           I      +    P+  +T+S GIA      P   T+I  AD+ALY AK  GRN VV F +
Sbjct: 345 ISAEPFPHEDDQPTGELTVSIGIATFPDDAPDWYTLINNADRALYEAKAKGRNNVVAFHE 404

Query: 261 I 261
           +
Sbjct: 405 L 405


>gi|331641567|ref|ZP_08342702.1| inner membrane protein YcdT [Escherichia coli H736]
 gi|331038365|gb|EGI10585.1| inner membrane protein YcdT [Escherichia coli H736]
          Length = 254

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 15/161 (9%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND  GHPVGD+VI  + + 
Sbjct: 87  DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTRGHPVGDQVIKTVVNI 146

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216
           +         + R+GGEEF         + A  LA  +R+ +E     N +  I     +
Sbjct: 147 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQ--KV 204

Query: 217 HITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
            I+I A + +     P    IYR AD ALY AK++GRN+VV
Sbjct: 205 TISIGAVVTQENALNPNE--IYRLADNALYEAKETGRNKVV 243


>gi|291614988|ref|YP_003525145.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291585100|gb|ADE12758.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 935

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 19/169 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI  L+  D L+GL N           +S    +  K++++F D+D+FK IND+ GH VG
Sbjct: 505 RIQYLANYDVLTGLPNRYLLNDRLEQGLSLAQRHQTKVAVMFIDLDHFKNINDSLGHDVG 564

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG--SSEQEAAI----LANDLRKIIEN 205
           D ++  +S +L         + R GG+EF  A LG  +SE E       + + LR+  E 
Sbjct: 565 DALLKMVSQRLKGCLRRSDTIARQGGDEF-VALLGDLNSEDEVTFVCEKMLHSLREEFEV 623

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           ++ ++S G SI ++I     E   +     ++  AD A+Y AK +GRNR
Sbjct: 624 AEYHLSVGTSIGVSIYPDDGETSVQ-----LLRNADLAMYRAKDAGRNR 667


>gi|225862602|ref|YP_002747980.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102]
 gi|225789508|gb|ACO29725.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102]
          Length = 567

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQAP- 251

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 252 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304


>gi|330964101|gb|EGH64361.1| response regulator/GGDEF domain-containing protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 334

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 11/169 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L   D L+GL N   F   L            +LS++  D+DYFK  NDNFGH  GD
Sbjct: 165 LQRLMNSDGLTGLSNRRHFDEYLELEWRRATRDQAQLSLLMIDVDYFKAYNDNFGHLEGD 224

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  ++  +      P     R GGEEFA     +S   A +LA  LR+ +   +I +I
Sbjct: 225 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVAGMKIPHI 284

Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257
           +  P   +T+S GIA    +  + +  +I  AD+ LY+AK +GRN+V  
Sbjct: 285 APVPGSSLTVSIGIATVTPQVGLHSRQLILDADKGLYLAKNNGRNQVAA 333


>gi|289675202|ref|ZP_06496092.1| GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 216

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L   D L+GL N   F   L            +LS++  D+DYFK  NDNFGH  GD
Sbjct: 47  LQRLMNSDGLTGLSNRRHFDEYLELEWRRAIREQSQLSMLMIDVDYFKPYNDNFGHLEGD 106

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  ++  +      P     R GGEEFA     +S   A +LA  LR+ +    I +I
Sbjct: 107 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVAGMNIPHI 166

Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257
           +  P   +T+S G+A    +  + +  +I  AD+ LY AK +GRN+V  
Sbjct: 167 APVPGSSLTVSIGVATMTPQVGMQSRQLILDADKGLYQAKNNGRNQVAA 215


>gi|167590663|ref|ZP_02383051.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Burkholderia ubonensis Bu]
          Length = 577

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 16/191 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFK 140
           +S SI+     +  RI +L+  D L+GL N + F++     L   ++ ++++F D+D FK
Sbjct: 316 LSWSIVTRQAEAEARIHELAHHDSLTGLPNRATFLAEFDACLRRSDKVIALLFIDLDGFK 375

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDL 199
            IND  GH  GD+V+  ++++L      P M +GR+GG+EFA       + +A       
Sbjct: 376 LINDARGHSAGDEVLRQVAERLRGQCPEPGMMLGRIGGDEFAVLM---RDTDADGAMGAA 432

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-----HKEPISTIIYRADQALYVAKKSGRNR 254
            ++++      +  P     I A I   C     H      ++ RAD ALY AKK+G+  
Sbjct: 433 ARLVDTLVAPYAPSPDRQFRIGASIG--CVLAPHHGNDAGVLLSRADMALYAAKKAGKGT 490

Query: 255 VVCFS-DIENN 264
              FS D+E +
Sbjct: 491 YRMFSPDMETS 501


>gi|158337002|ref|YP_001518177.1| EAL domain-containing protein [Acaryochloris marina MBIC11017]
 gi|158307243|gb|ABW28860.1| EAL domain protein [Acaryochloris marina MBIC11017]
          Length = 608

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 94/185 (50%), Gaps = 12/185 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISS-LGSYN------EKLSIVFFDIDYFKQIND 144
           +L ++   + +L+ +D L+ + N   F    L  +N      + LS++  D+D+FK  ND
Sbjct: 156 QLAVANLELERLAAVDSLTRVYNRRRFDEVFLTEWNRLLREEKPLSLIMCDVDHFKAYND 215

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  +  V   P   V R GGEEF      +    A  +A  +R  +
Sbjct: 216 TYGHQAGDLCLEKIAQTIAKVAKRPADCVARYGGEEFVVVLPNTDISGATHVAEAIRGAV 275

Query: 204 ENSQINISSGP-SIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRV-VCFS 259
            N  +  S+ P S  IT+S G+A +   E I  S +I  AD+A+Y AK+ GR+R+ V ++
Sbjct: 276 HNLNLPHSTSPISNRITLSLGVACQVPDEAIAPSLLIEAADRAMYTAKEGGRDRMQVHYA 335

Query: 260 DIENN 264
           D   N
Sbjct: 336 DCAVN 340


>gi|53804660|ref|YP_113668.1| response regulator [Methylococcus capsulatus str. Bath]
 gi|32401163|gb|AAP80771.1|AF525283_3 MmoQ [Methylococcus capsulatus]
 gi|53758421|gb|AAU92712.1| response regulator [Methylococcus capsulatus str. Bath]
          Length = 634

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 14/174 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL  +  R+  ++  D L+GL N    +  L        +++  LSI+  D+D+FK IND
Sbjct: 460 ELAAANRRLELMAHTDQLTGLPNRRYAMDRLEREWAQARTFDRPLSIMMLDLDWFKSIND 519

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH  GD+ +   +  +     T   V R+GGEEF      ++   A   A  +R  +E
Sbjct: 520 SLGHDAGDQALVHAARVMRETVRTSDVVCRMGGEEFLIIIPDTAGPAAIQTAERVRSAVE 579

Query: 205 NSQ---INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             Q   + +S      +T S G+A+      +  ++ +AD ALY  K++GRN V
Sbjct: 580 QQQPAKLKLSRP----LTASIGVADSTSAPSLKDLLLKADNALYQVKQNGRNGV 629


>gi|332140385|ref|YP_004426123.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550407|gb|AEA97125.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 518

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 76/167 (45%), Gaps = 20/167 (11%)

Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           SR D L+ L N  A+   L        S    L++   DID+FK IND FGH  GDK + 
Sbjct: 353 SRTDPLTRLPNRQAYNERLETAYTRFKSNGHSLAVAVVDIDHFKSINDRFGHATGDKTLQ 412

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-- 214
            +S  L        FV R GGEEF    L  +E        D+ K +   +  +++ P  
Sbjct: 413 VVSKFLKQSLSENDFVARWGGEEF-VMLLPDAE------MADIDKKLNEVRTKLAAMPFK 465

Query: 215 --SIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVC 257
                + I+A     C    +   ++  RAD+ LY AK+SGRN VV 
Sbjct: 466 FKQEKVKITASFGATCFGQDDTTESVFERADEYLYKAKRSGRNLVVT 512


>gi|330951409|gb|EGH51669.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 712

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 18/187 (9%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEK----LSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++ S    NE+    L +
Sbjct: 254 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 310

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF      L   E
Sbjct: 311 LFMDLDGFKQINDALGHEAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247
           Q A I    + ++    Q++   G  I +  S GIA    C    +  ++  AD A+Y A
Sbjct: 371 QAAKIAEKLIERVSGRRQVD---GVEITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 426

Query: 248 KKSGRNR 254
           K++GR +
Sbjct: 427 KRAGRQQ 433


>gi|320105919|ref|YP_004181509.1| diguanylate cyclase [Terriglobus saanensis SP1PR4]
 gi|319924440|gb|ADV81515.1| diguanylate cyclase [Terriglobus saanensis SP1PR4]
          Length = 424

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 88/183 (48%), Gaps = 26/183 (14%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +++  D L+GL N   +   L        +    +S +  DID+FK +ND  GH  GD
Sbjct: 232 LQRVASRDALTGLNNRHTYDLRLQELFADTIANPRPISAIMVDIDHFKILNDTHGHLFGD 291

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE------- 204
           +VI  ++  +         F  R GGEEF      ++E+ A I+A  +R ++E       
Sbjct: 292 RVIRRVATLVSEALRAETDFAARFGGEEFVVLLDDTNEEHALIVAERIRTLVEIAGSPAY 351

Query: 205 -----NSQINISSGP--SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNR 254
                 S   +++ P  S+  T+S G+A      +  P+  +I RADQALY AK  GRNR
Sbjct: 352 DTDLRRSSRFVANRPPASLLTTVSCGVATVIPNKNDHPMD-LIARADQALYRAKSEGRNR 410

Query: 255 VVC 257
           V C
Sbjct: 411 VCC 413


>gi|302388360|ref|YP_003824182.1| diguanylate cyclase [Clostridium saccharolyticum WM1]
 gi|302198988|gb|ADL06559.1| diguanylate cyclase [Clostridium saccharolyticum WM1]
          Length = 371

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 14/165 (8%)

Query: 105 RIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           ++D  +GL N   F + L    E+       L++   D+D FK++ND +GH  GD+V+  
Sbjct: 209 KLDPFTGLYNRGTFDACLTGMVEECRYENSCLTLAVIDVDKFKRVNDVYGHAAGDRVLLH 268

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           LS  L       +   R+GGEEFA    G   +EA  + +++R I+E+S +N        
Sbjct: 269 LSQILKSNQTEDIKAFRIGGEEFAILLKGYHVKEAYRICDEMRTIMESSSLN--QIDRRI 326

Query: 218 ITISAGIAERCHK-EPI--STIIYRADQALYVAKKSGRNRVVCFS 259
           IT S G+A  C   +P     ++  AD ALY AK +GRN +V ++
Sbjct: 327 ITFSCGLA--CTDIQPAGPEALLRAADVALYEAKNNGRNCIVIYA 369


>gi|300867867|ref|ZP_07112508.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300334103|emb|CBN57684.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 717

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 17/175 (9%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKL-SIVFFDIDYFKQIND 144
           EL +S +R+   +  D L+GL N   F  SL       S  ++L +++F D+D FK IND
Sbjct: 544 ELLLSEDRLRYQAYHDDLTGLPNRQLFHESLSVSIKQASVKDQLVALLFLDLDGFKLIND 603

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
           + GH VGD ++  ++++L         + RLGG+EF     G   + +AA +A  +   I
Sbjct: 604 SLGHDVGDLLLKGVAERLKGCLRGSDTISRLGGDEFTVILPGIPGKPDAARVAEKILDAI 663

Query: 204 ENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +Q+ +  G SI +T S GI+    +   KE   T+I  AD A+Y AK+ G+NR
Sbjct: 664 --TQVFLLDGNSIAVTTSIGISLYPLDGQDKE---TLIKNADAAMYRAKELGKNR 713


>gi|218440501|ref|YP_002378830.1| diguanylate cyclase [Cyanothece sp. PCC 7424]
 gi|218173229|gb|ACK71962.1| diguanylate cyclase [Cyanothece sp. PCC 7424]
          Length = 902

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 88/175 (50%), Gaps = 13/175 (7%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFG 147
           I + ++      D L+GL N   +   L    +K       LS++  DIDYFK  ND +G
Sbjct: 724 IEFEQLYFFFNFDSLTGLFNRRRYDEKLQKAWDKCKQEQKPLSLILADIDYFKIYNDTYG 783

Query: 148 HPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           H VGD   K IA +  + + +F     V R GGEEF+       ++++  +A  +   ++
Sbjct: 784 HLVGDECLKKIAQMLKKSINIFDDLPIVARYGGEEFSIILPEYGQEKSIQVAKKIMNELQ 843

Query: 205 NSQINISSGP-SIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256
             +I  SS P S ++T+S GIA     +  S   ++  ADQALY AK  GRNR +
Sbjct: 844 LLKITYSSSPLSDYMTLSLGIACTIPNKNSSPDRLLSVADQALYRAKVEGRNRFI 898


>gi|104781427|ref|YP_607925.1| sensory box protein [Pseudomonas entomophila L48]
 gi|95110414|emb|CAK15122.1| putative sensory box protein [Pseudomonas entomophila L48]
          Length = 703

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 13/177 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVF-FDIDYFKQIND 144
           E   ++ +I  ++  D L+GL N + F   L      G  + KL+     D+D FK IND
Sbjct: 263 EELAAHAQIHHMAHHDALTGLPNRTLFHERLKQALLRGEDDGKLTAALCLDLDNFKNIND 322

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GDK++  L  +L         + RLGG+EFA    G   +EAA  ++  +++IE
Sbjct: 323 TQGHAFGDKLLRALGKRLRRELREHDTLARLGGDEFAVVLSGLDSREAA--SSTAQRLIE 380

Query: 205 N--SQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                  I     S+ ++I    A   H +    + Y AD ALY AK++GRNR  CF
Sbjct: 381 AICPPFQIEGHQFSVGVSIGVATAPDDHDQAEQLLGY-ADMALYEAKRNGRNRFECF 436


>gi|91200104|emb|CAJ73147.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 286

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 11/165 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           N+   ++R D L+G+ N   F       I  +  +   LS+ + DID FKQ+ND  GH  
Sbjct: 114 NKEKSMARNDFLTGVANRRFFYEIATKEIERIARFIHPLSLAYIDIDNFKQVNDTLGHSA 173

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDK++  ++  +     +   V RLGG+EFA     ++ Q A    N LR  + +  ++ 
Sbjct: 174 GDKLLQVVAGTIKENIRSIDTVSRLGGDEFALLMPETNAQSAITALNKLRHALLD-MVHE 232

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++ P   +T S G+        ++ +I  AD  +Y  K SG+NR+
Sbjct: 233 NNWP---VTFSIGLVTCSESCKLNELIKEADNLMYTIKASGKNRI 274


>gi|26987111|ref|NP_742536.1| GGDEF domain-containing protein [Pseudomonas putida KT2440]
 gi|24981740|gb|AAN66000.1|AE016229_1 GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 400

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 127/283 (44%), Gaps = 37/283 (13%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTF---MIYFSIFFSIFIATVI--FIANIFLFYIGL 55
           + +S  + L  WL  E    +   H      + + +F  +FI  V+    A   L    L
Sbjct: 114 LQQSYPEALLTWLA-EIRWPALHGHWMSLIQMVYPLFLGVFILLVVQYLRAPRPLHAAQL 172

Query: 56  TPFYGLEYILVENLSLV-IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
               G+ ++L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL  
Sbjct: 173 IGLLGIFWMLPQTFILPFTLNIMCSQVMLMIAAAVAHEAY-------QMAFRDELTGLPG 225

Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
             A    +        I   D+D+FK+ ND  GH VGD+V+  ++ +L  V G      R
Sbjct: 226 RRALNERMQRLGRNYVIAMTDVDHFKKFNDTHGHDVGDQVLRLVASRLSKVTGG-GRAYR 284

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-------------------SSGPS 215
            GGEEFA    G +  E       +R++I N  +++                   S+G +
Sbjct: 285 YGGEEFALVFAGKTAAECVPHVEAVREVIANYVMHLRDQHNRPQDDTAGRQRRAGSAGGT 344

Query: 216 IHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +TIS G+AER   H+ P   ++  ADQALY AK +GRN V+
Sbjct: 345 VSVTISIGVAERQADHRNP-EAVLKSADQALYSAKGAGRNCVM 386


>gi|332187765|ref|ZP_08389499.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
 gi|332012115|gb|EGI54186.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
          Length = 619

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 9/154 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+GL N  A +      +   +++  DID+FK+IND  GH  GD+V+   +  L+   
Sbjct: 413 DPLTGLFNRRALLDQAIGRSGPQTLILADIDHFKRINDTLGHDEGDEVLRGFALALIDTL 472

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                  R+GGEEFA  A      E  +L   LR     + + +++     + +  G+  
Sbjct: 473 PPGTLAARIGGEEFALLADVDHAPEPEVLLQRLRAAAYPAGLKVTAS----LGLCTGM-- 526

Query: 227 RCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259
             H E     +YR ADQAL+ AK +GR+R  C++
Sbjct: 527 -LHDEEDWRKLYREADQALFAAKNAGRDR-ACWA 558


>gi|318041857|ref|ZP_07973813.1| diguanylate cyclase [Synechococcus sp. CB0101]
          Length = 190

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 12/168 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
            + ++ Q +  D L GLLN +AF        +   +    L     DIDYFK++ND +GH
Sbjct: 17  EHEKLHQAAHTDGLKGLLNRTAFAPLFDACTADAAAGQGGLVAALMDIDYFKRVNDTYGH 76

Query: 149 PVGDKVIAFLSDQLV--VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
            VGD+ +  ++  +   V    P+F  R GGEEF      +   +A      LR  +  +
Sbjct: 77  AVGDEALRIVATAIRSSVRDTDPVF--RWGGEEFLLLLPMADLPQALARLEALRDRLRGT 134

Query: 207 QINI-SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            I +     +I++ +S G+      E  + ++ RAD+ALY AK SGR+
Sbjct: 135 PIEVPQPAGAIYVNLSFGVGRHRKGESSAGLLQRADRALYDAKNSGRD 182


>gi|300313782|ref|YP_003777874.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gi|300076567|gb|ADJ65966.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 475

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 11/168 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQINDNFGHP 149
            ++ +L+R D L+ LLN  A   +L    ++         S++F D+D+FK  ND +GH 
Sbjct: 305 QQLEELARTDKLTSLLNRRALDEALARAWKRAEENPDAIFSLLFVDVDFFKLYNDTYGHK 364

Query: 150 VGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            GD  +  +S  +V          GR GGEEF     G+    A  +A  +   I++ +I
Sbjct: 365 AGDYALMAVSRCIVAAVSRLSDQSGRYGGEEFVVLLNGTDTVGATHVAKRIISAIQSLKI 424

Query: 209 NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNR 254
                P   +T+S G+    R H   I  ++  AD ALY AK+ GRN+
Sbjct: 425 PHERSPFDILTVSIGVTSLLREHHSSIEDVVKDADAALYRAKQDGRNK 472


>gi|283470039|emb|CAQ49250.1| ggdef domain protein [Staphylococcus aureus subsp. aureus ST398]
          Length = 356

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 9/168 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
           NR     + D L+GL N   F   L   + K       ++++  DID FK +ND + H  
Sbjct: 182 NRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHKS 241

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  +S  L         + R GGEEF+      S  ++  LA ++R  +E S  ++
Sbjct: 242 GDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIRNYSLDQSVKLAENIRSGVEKSSFHL 301

Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
            +   I +++S G+      +P S   +   AD  ++VAK  GRN+V+
Sbjct: 302 PNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVM 349


>gi|258654169|ref|YP_003203325.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nakamurella multipartita DSM 44233]
 gi|258557394|gb|ACV80336.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nakamurella multipartita DSM 44233]
          Length = 702

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 11/170 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           R+   +  D L+GL N + F   LG         E++ +   D+D FK IND+ GH VGD
Sbjct: 265 RLEHQAHHDALTGLANRALFQQRLGELAATTDPTERIGLCLLDLDGFKAINDSVGHGVGD 324

Query: 153 KVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           +V+  ++ +L   V G    V RLGG+EF     G+S+ +  +   +         ++++
Sbjct: 325 RVLVEIAARLGQTVDGDRQLVARLGGDEFVILVAGTSDAQDMVAVAEAALAAVARPVSVA 384

Query: 212 SGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            G   ++T SAG+ ER     +P + ++  AD  LY AK  G+ R   F 
Sbjct: 385 GG-VFNVTASAGLVERTAAGADP-AELVRAADITLYWAKAEGKARWAIFD 432


>gi|161525475|ref|YP_001580487.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Burkholderia multivorans ATCC 17616]
 gi|160342904|gb|ABX15990.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia multivorans ATCC 17616]
          Length = 935

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 91/177 (51%), Gaps = 15/177 (8%)

Query: 102 QLSRI---DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           QL R+   D L+GL N           I         L++VF D+D FK++ND  GH VG
Sbjct: 382 QLERVAHYDLLTGLPNRLLLGDRLKQAIRQTRRRGMHLAVVFIDLDGFKEVNDQHGHAVG 441

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DK+++ LS ++  V      + RLGG+EF A  +   E   ++   D  ++IE +   + 
Sbjct: 442 DKLLSVLSRRMTQVLREGDTLARLGGDEFVAVLVDLPENSFSLPILD--RLIEVAAQPVP 499

Query: 212 SGPSI-HITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            G ++  ++ S G++     E I    ++ +ADQA+Y AK++G+NR   F   ++ T
Sbjct: 500 IGDALCEVSASIGVSYYPQGEDIDADQLLRQADQAMYRAKQAGKNRYHVFDSEKDRT 556


>gi|189349796|ref|YP_001945424.1| signal transduction GGDEF/EAL domain protein [Burkholderia
           multivorans ATCC 17616]
 gi|189333818|dbj|BAG42888.1| signal transduction GGDEF/EAL domain protein [Burkholderia
           multivorans ATCC 17616]
          Length = 860

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 91/177 (51%), Gaps = 15/177 (8%)

Query: 102 QLSRI---DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           QL R+   D L+GL N           I         L++VF D+D FK++ND  GH VG
Sbjct: 307 QLERVAHYDLLTGLPNRLLLGDRLKQAIRQTRRRGMHLAVVFIDLDGFKEVNDQHGHAVG 366

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DK+++ LS ++  V      + RLGG+EF A  +   E   ++   D  ++IE +   + 
Sbjct: 367 DKLLSVLSRRMTQVLREGDTLARLGGDEFVAVLVDLPENSFSLPILD--RLIEVAAQPVP 424

Query: 212 SGPSI-HITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            G ++  ++ S G++     E I    ++ +ADQA+Y AK++G+NR   F   ++ T
Sbjct: 425 IGDALCEVSASIGVSYYPQGEDIDADQLLRQADQAMYRAKQAGKNRYHVFDSEKDRT 481


>gi|330894558|gb|EGH27219.1| response regulator WspR [Pseudomonas syringae pv. mori str. 301020]
          Length = 334

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 11/169 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L   D L+GL N   F   L            +LS++  D+DYFK  NDNFGH  GD
Sbjct: 165 LQRLMNSDGLTGLSNRRHFDEYLELEWRRAIRDQAQLSLLMIDVDYFKAYNDNFGHLEGD 224

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  ++  +      P     R GGEEFA     +S   A +LA  LR+ +    I +I
Sbjct: 225 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVSGMNIPHI 284

Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257
           +  P   +T+S G+A    +  + +  +I  AD+ LY+AK +GRN+V  
Sbjct: 285 APTPGSSLTVSIGVATVTPQVGMHSRQLILDADKGLYLAKNNGRNQVAA 333


>gi|323698265|ref|ZP_08110177.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Desulfovibrio sp. ND132]
 gi|323458197|gb|EGB14062.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Desulfovibrio desulfuricans ND132]
          Length = 444

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 90/171 (52%), Gaps = 13/171 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+ +D L+G+ N   F   L         Y  +++++F D+D+FK++ND  GH  GD
Sbjct: 272 LKRLATLDSLTGVANRHRFFDRLEHALAVAKRYGTRVAVLFVDLDHFKRVNDTHGHQTGD 331

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINIS 211
           +++  ++ +L         + RLGG+EF     G  +QE A+  A DL +++   Q    
Sbjct: 332 ELLRLVAGRLRQRTRESDTLARLGGDEFGILLPGIVDQEGALSFARDLLEVV--RQPYEV 389

Query: 212 SGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            G  + I  + GI+      ++ + T+I RAD A+Y AKK GR+    F++
Sbjct: 390 GGLPLTIGATVGISFYPEDGRDTV-TLISRADAAMYGAKKRGRSDFGTFAE 439


>gi|222111210|ref|YP_002553474.1| diguanylate cyclase [Acidovorax ebreus TPSY]
 gi|221730654|gb|ACM33474.1| diguanylate cyclase [Acidovorax ebreus TPSY]
          Length = 386

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 7/165 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-SYNEKLS----IVFFDIDYFKQINDNFGHPVGD 152
           +++  ++  D ++ LLN      +L  S+N++ +    ++  D+D+FK+IND +GH  GD
Sbjct: 209 DQLRHIAARDPMTQLLNRRGLTEALQLSFNQRRAEHAHLLVVDVDHFKRINDTYGHHAGD 268

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
            V+  +++ L         V RLGGEEFA   L +    A  +A  LR  IE   I+I+ 
Sbjct: 269 TVLCRVAEILQATARRGDLVSRLGGEEFAVICLHTDFPGAMHMAERLRAAIETQTIDIAE 328

Query: 212 SGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255
            G  +  T++ G+++       +   + +AD ALY  K +GRNRV
Sbjct: 329 GGHPLQCTVTVGVSQGFADAHALEAALQQADAALYRGKAAGRNRV 373


>gi|188575107|ref|YP_001912036.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188519559|gb|ACD57504.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 200

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 65/128 (50%), Gaps = 6/128 (4%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK++ND FGH  GD+V+  ++  +   F     + R GGE F     G     A  
Sbjct: 59  DIDHFKRVNDTFGHLYGDEVLLLVAQLMQRAFRQHDLLFRFGGEAFVIVVRGVDRDTAVS 118

Query: 195 LANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           L   LR  +          P +  +T+S GI E  H   IS ++  AD+ALY AK+ GRN
Sbjct: 119 LFERLRLAVAQHLF-----PQVGQVTLSTGIVELTHGRLISEMLDEADKALYWAKQHGRN 173

Query: 254 RVVCFSDI 261
           R   ++++
Sbjct: 174 RAALYAEL 181


>gi|121595554|ref|YP_987450.1| response regulator receiver modulated diguanylate cyclase
           [Acidovorax sp. JS42]
 gi|120607634|gb|ABM43374.1| response regulator receiver modulated diguanylate cyclase
           [Acidovorax sp. JS42]
          Length = 341

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 88/183 (48%), Gaps = 11/183 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
            + +EL ++   ++++  +D L+GL+N   F   L S           L+++  D+D+FK
Sbjct: 148 ELTEELHVANQHLNEMVEMDPLTGLVNRRGFDRILHSEILAARRDGVPLTLMLCDLDHFK 207

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDL 199
           + ND  GH  GD  +  +   L  V   P  V  R GGEEFA     +    A   A  L
Sbjct: 208 RYNDTLGHVQGDACLKEVGRVLHDVCMRPRDVASRYGGEEFALILPNTPRSGAMTFARAL 267

Query: 200 RKIIENSQINISSGPSIH-ITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
            K++++  I     P+   +T+S GI      +  S  T++ RAD+ALY AK  GR+R  
Sbjct: 268 GKLLKSRAIAHPGSPNGETLTLSGGITTCVPDDGTSAETMLMRADEALYAAKAQGRDRFF 327

Query: 257 CFS 259
            F 
Sbjct: 328 SFE 330


>gi|13472768|ref|NP_104335.1| hypothetical protein mlr3171 [Mesorhizobium loti MAFF303099]
 gi|14023515|dbj|BAB50121.1| mlr3171 [Mesorhizobium loti MAFF303099]
          Length = 832

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 61/210 (29%), Positives = 104/210 (49%), Gaps = 20/210 (9%)

Query: 70  SLVIISITISLLL--GYISGSIL-------KELFISYNRISQLSRIDCLSGLLNHSAF-- 118
           S+V +++T + LL  G + G++L       +E +I   R+S  +  D L+GL +   F  
Sbjct: 336 SVVPVALTGAPLLVSGDVVGAVLAFHDMTREEDYIE--RLSWQASHDALTGLADRRDFES 393

Query: 119 -----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                I  L     + ++++ D+D FK +ND  GH  GD+++  +S  L         + 
Sbjct: 394 RLERTIVELRGQPRQHALMYLDLDQFKLVNDTCGHAAGDQLLRQISALLTCELRPGDVLA 453

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-P 232
           RLGG+EF    +     EA  +A  LR  ++N    +  G  ++ ++S G+ E  + +  
Sbjct: 454 RLGGDEFGVLLVDCEADEACDIAERLRAAVQNLHF-VWDGRPLNTSVSVGMVEIANAQVT 512

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           I   +  AD A Y+AK+ GRNRV   SD +
Sbjct: 513 IEETLRAADVACYMAKEKGRNRVQIHSDCD 542


>gi|146294331|ref|YP_001184755.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
 gi|145566021|gb|ABP76956.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
          Length = 454

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 8/176 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHS---AFISSLGSYNEK----LSIVFFDIDYFKQIND 144
           +L    NR  +  R D L+ LLN     A ++   +Y+ +     +I+  DID+FK +ND
Sbjct: 276 DLLFEQNREVESGR-DVLTRLLNRKFLPAVMTKEVNYSRRNKSQFAILAIDIDHFKTVND 334

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           ++GH  GD V+  L+  L        ++ RLGGEEF    +  + +EAA+ A ++R+ +E
Sbjct: 335 SYGHEGGDLVLQHLAALLSNTGRGGDYLFRLGGEEFLMLLVDINAREAALSAENIRRKVE 394

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                +     + IT+S G+A           +  AD AL+ AK++GRN ++   D
Sbjct: 395 RETFLLPHNQQLQITVSIGLAMYDGHPDYQRCLRAADDALFAAKRAGRNCIITAID 450


>gi|320332848|ref|YP_004169559.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
 gi|319754137|gb|ADV65894.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
          Length = 810

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 6/160 (3%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           R++  ++ D L+GLLN +AF  +L +     +  L ++F D+D+FKQ+ND  GHPVGD +
Sbjct: 381 RLAYQAQHDALTGLLNRAAFEGALQAAVQGPDTTLGVLFIDLDHFKQVNDTLGHPVGDAL 440

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++++L V       V R GG+EF    L + +  A + A   R +   S      G 
Sbjct: 441 LIQVAERLSVCVRDGDLVARQGGDEF-TVLLRNVQAHADVEAAAQRILDALSAPMDLVGR 499

Query: 215 SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           ++ +T S GIA   H    ++T+   AD A+Y AK+  R+
Sbjct: 500 ALVVTASIGIALFPHDGTDVTTLQKHADLAMYHAKRDRRS 539


>gi|294649882|ref|ZP_06727282.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|292824256|gb|EFF83059.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 425

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 87/175 (49%), Gaps = 10/175 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           K L +  + +  LS+ D L+ + N   F      Y        + L+++F DIDYFK  N
Sbjct: 237 KILRLQASELLHLSQHDDLTNVSNRRTFEEMCTYYYDLACQEQKPLAVLFIDIDYFKNYN 296

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH +GD  I+ ++  +        F+ R GGEEF      +  Q A  +A ++ + I
Sbjct: 297 DFYGHQMGDHAISEIAKTIKGSIRHMDFIARYGGEEFVVLLPETPAQGAYAVATNIYRAI 356

Query: 204 ENSQI-NISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255
           +   I +  S  S H+TIS GI        IS   +I  AD+ALY AK+ GRN++
Sbjct: 357 DRLMIPHAKSLVSNHVTISLGITVFNGNRAISQELLIDTADKALYRAKQLGRNQI 411


>gi|289646232|ref|ZP_06477575.1| response regulator WspR [Pseudomonas syringae pv. aesculi str.
           2250]
          Length = 334

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 11/169 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L   D L+GL N   F   L            +LS++  D+DYFK  NDNFGH  GD
Sbjct: 165 LQRLMNSDGLTGLSNRRHFDEYLELEWRRAIRDQAQLSLLMIDVDYFKAYNDNFGHLEGD 224

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  ++  +      P     R GGEEFA     +S   A +LA  LR+ +    I +I
Sbjct: 225 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVSGMNIPHI 284

Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257
           +  P   +T+S G+A    +  + +  +I  AD+ LY+AK +GRN+V  
Sbjct: 285 APTPGSSLTVSIGVATVTPQVGMHSRQLILDADKGLYLAKNNGRNQVAA 333


>gi|153833103|ref|ZP_01985770.1| ggdef family protein [Vibrio harveyi HY01]
 gi|148870671|gb|EDL69578.1| ggdef family protein [Vibrio harveyi HY01]
          Length = 655

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 77/162 (47%), Gaps = 11/162 (6%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           SR+D L+G LN S  I  + +       + +  +   D+D+FK IND  GHP GD V+  
Sbjct: 477 SRLDRLTGSLNRSTIIEKIRAQTVSAPEDMRYVLALIDLDHFKLINDQHGHPTGDLVLKH 536

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +   +        ++GRLGGEEF        E +       L K I    I    G S+ 
Sbjct: 537 VCKAIQAKLNKGEYIGRLGGEEFILLLKNVDEIDVPFRIQSLHKTISEKHIKSEQGDSLS 596

Query: 218 ITISAGIAERCHKEPISTI--IYR-ADQALYVAKKSGRNRVV 256
           +T  A +A     +P+S    +Y   DQALY +K++G N V+
Sbjct: 597 VT--ASLAYLSTSKPLSNFDELYSILDQALYQSKRNGHNAVI 636


>gi|152998292|ref|YP_001343127.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Marinomonas sp. MWYL1]
 gi|150839216|gb|ABR73192.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinomonas sp. MWYL1]
          Length = 734

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 6/175 (3%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNF 146
           + E+  +++++  L+  D L+ L N  A   +       N K++++F D+D+FK +ND  
Sbjct: 289 IDEIQKAHDQVEWLAHHDSLTKLPNRVALNKTFHKIIKPNTKIALLFIDLDHFKNVNDTL 348

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH +GD+++  ++D++  +     +V R GG+EF    L +  +E  I      K   ++
Sbjct: 349 GHSIGDQLLLTVADRMRTLVNNIGYVARQGGDEF-IILLPADNEECLIEKTCAIKEALSA 407

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + NI       IT S G++      E   T+  RAD A+Y AK +GRNR   F++
Sbjct: 408 RYNIDQH-QFFITPSIGVSLYPRNGEDFDTLYQRADAAMYHAKHTGRNRYAFFTE 461


>gi|187922417|ref|YP_001894059.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
 gi|187713611|gb|ACD14835.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
          Length = 516

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 103/219 (47%), Gaps = 17/219 (7%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ-----LSRIDCLSGLLNHSA 117
           Y+   + + +I S+  +L +  I+ ++L    + Y R ++     L+R D L+GL N   
Sbjct: 282 YVEWRHRAWIIGSLIAALDVTIIALAVLFSYQLRYRRAAEEELRVLARTDGLTGLNNRRT 341

Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           F         +       LS++  D+D FK  ND +GH  GD  +  ++  +      P 
Sbjct: 342 FEEHAEDEWRRAQRNAWPLSMLLIDVDSFKGFNDLYGHSAGDDALTAVARCISQSVRRPG 401

Query: 171 -FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               R GGEEFA     + E  AA +A  +R  ++  Q+   +     +T+S GIA    
Sbjct: 402 DTAARYGGEEFAVLLPDTDETGAAFIAEKIRAAVQALQLRHVASSQHVLTVSIGIAT-TR 460

Query: 230 KEPIST---IIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            E  +T   ++  AD ALY AK +GRNRV+ +  + + +
Sbjct: 461 GEAFATSRALLNAADDALYEAKDAGRNRVLSYRTVTHTS 499


>gi|81300905|ref|YP_401113.1| diguanylate cyclase with GAF sensor [Synechococcus elongatus PCC
           7942]
 gi|81169786|gb|ABB58126.1| diguanylate cyclase with GAF sensor [Synechococcus elongatus PCC
           7942]
          Length = 664

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 83/182 (45%), Gaps = 14/182 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           +L  +  ++ +L++ D L+GL N   F   L             L ++  DID FKQ ND
Sbjct: 479 QLAAANQQLLRLAQSDGLTGLANRRHFDQCLDIEWQRAIREQHPLGLILIDIDCFKQFND 538

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  L  V   P   V R GGEEF      ++EQ    +A  +R  +
Sbjct: 539 TYGHQAGDDCLKAVATALTQVIARPADLVARYGGEEFVVILPNTNEQGILQIAESMRSAV 598

Query: 204 ENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  +I   S         +  A       HK P   +I  ADQALY AK+ GRNR VC +
Sbjct: 599 QQLKIPHRSSSVCSSVSLSLGAVTWVPTPHKSP-EALIAAADQALYQAKELGRNR-VCLA 656

Query: 260 DI 261
            +
Sbjct: 657 GV 658


>gi|326795669|ref|YP_004313489.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326546433|gb|ADZ91653.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 587

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 93/166 (56%), Gaps = 11/166 (6%)

Query: 99  RISQLSRIDCLSGLLNHS---AFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDK 153
           R+S +++ D L+GL N     ++IS   + +E+  L+ +F D+D FK++ND+ GH  GD+
Sbjct: 421 RLSHMAKHDTLTGLPNRDYIMSYISDTLAEDEQRGLTAMFADLDGFKKVNDDLGHQAGDE 480

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND-LRKIIENSQINIS 211
           ++  +S++L         VGR+GG+EF         E EA  +A+  L+ + +  QI   
Sbjct: 481 LLRQVSERLKHSVREGDVVGRIGGDEFVIILPDVIHETEAENIAHKILQSVKQPYQI--- 537

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G   H+ IS G A    H + +  ++  AD A+Y +K++G++R V
Sbjct: 538 EGDQAHVGISIGAASYPNHTDDLDELLKIADAAMYHSKRTGKHRFV 583


>gi|309792204|ref|ZP_07686676.1| diguanylate cyclase [Oscillochloris trichoides DG6]
 gi|308225745|gb|EFO79501.1| diguanylate cyclase [Oscillochloris trichoides DG6]
          Length = 647

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 9/176 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFK 140
            +++EL      + + +  D L+GL N         A  ++     + L  +  DID FK
Sbjct: 473 EVIRELEARTRILEREANEDSLTGLFNRRYIDNHIEALAAAAVQLRQTLCAIMGDIDNFK 532

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND F H +G+ V+  ++  +         V R GGEEF      +  +EA ++A  +R
Sbjct: 533 QVNDQFSHMLGNDVLRTVAKLMRQNTRESDLVARYGGEEFLILLPNTLLEEAVLIAEAIR 592

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           K +E  +   +  P + +TIS G+A          ++  ADQ LYVAK++G+NRV 
Sbjct: 593 KTVEGYRW-YALEPRLRVTISLGVAV-LRNGDAEQMVATADQQLYVAKRTGKNRVA 646



 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 5/97 (5%)

Query: 99  RISQLSRIDCLSGL----LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           R +QL   + L+G+    L  +     LG  +   S+++ D+D FK  ND +G   GD+ 
Sbjct: 148 RAAQLPVRNPLTGMPGNVLLQAELERQLG-LDHAFSLLWIDLDNFKAFNDAYGFARGDRA 206

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           I  L+  +        FVG +GG++FA    G+  ++
Sbjct: 207 IHLLAHVITETSDHDDFVGHIGGDDFAIIHFGNDPED 243


>gi|209809247|ref|YP_002264785.1| putative GGDEF protein [Aliivibrio salmonicida LFI1238]
 gi|208010809|emb|CAQ81206.1| putative GGDEF protein [Aliivibrio salmonicida LFI1238]
          Length = 528

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 84/169 (49%), Gaps = 10/169 (5%)

Query: 98  NRISQLSRI---DCLSGLLNH----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           N++ +L +    D L+ L N     SAFI  +    +   ++  DID FK IND + H  
Sbjct: 362 NKVKKLQKDVQHDSLTKLYNRRWFESAFIKKILPTIKHYQLLIIDIDDFKSINDEYSHLT 421

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQIN 209
           GD V+  L   L        +  R GGEEF      +  +    +A   R++I N S  +
Sbjct: 422 GDVVLKRLGRILQKNLDNSHYALRYGGEEFLLIIPSNDLEVGRRIAEQCRELIANVSWKH 481

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           I +  S  IT+S G+A   + EP  +   RAD+ALY AK+SG+N+V  +
Sbjct: 482 ILNDRS--ITVSIGLAINTNSEPCKSTFLRADKALYKAKRSGKNKVCIY 528


>gi|145299161|ref|YP_001142002.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851933|gb|ABO90254.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 412

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 9/200 (4%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125
           LSL+       LLL  +     + L  +   + Q +  D L+GLL+   F   L +    
Sbjct: 206 LSLLFTIARSYLLLSLVHTRQQQALLATQRELEQRANQDELTGLLSRHYFQQLLQAQVSA 265

Query: 126 -NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
                 ++  D+D FKQIND  GHP GD ++  +   +          GRLGG+E     
Sbjct: 266 GANPCQLLLIDLDDFKQINDRHGHPAGDAMLRLVGQVIRTTLPRQGIAGRLGGDEL-VIF 324

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
           L  + Q      + L++ I  +   ++ GP   I++S G+      E       RAD+AL
Sbjct: 325 LMENPQTLPHYCHTLQQRIAQATSQLAGGP---ISMSIGLTSLQPGERFEQAYPRADRAL 381

Query: 245 YVAKKSGRNRVVCFSDIENN 264
           Y AK+ GR R  C  +  ++
Sbjct: 382 YAAKQGGRQR-TCIQEPHHS 400


>gi|71734371|ref|YP_276013.1| response regulator WspR [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|257487127|ref|ZP_05641168.1| response regulator WspR [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|298488300|ref|ZP_07006332.1| Two-component response regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71554924|gb|AAZ34135.1| response regulator WspR [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|298157122|gb|EFH98210.1| Two-component response regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320323153|gb|EFW79242.1| response regulator WspR [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320329575|gb|EFW85564.1| response regulator WspR [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330878329|gb|EGH12478.1| response regulator WspR [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330985075|gb|EGH83178.1| response regulator WspR [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331009248|gb|EGH89304.1| response regulator WspR [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 334

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 11/169 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L   D L+GL N   F   L            +LS++  D+DYFK  NDNFGH  GD
Sbjct: 165 LQRLMNSDGLTGLSNRRHFDEYLELEWRRAIRDQAQLSLLMIDVDYFKAYNDNFGHLEGD 224

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  ++  +      P     R GGEEFA     +S   A +LA  LR+ +    I +I
Sbjct: 225 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVSGMNIPHI 284

Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257
           +  P   +T+S G+A    +  + +  +I  AD+ LY+AK +GRN+V  
Sbjct: 285 APTPGSSLTVSIGVATVTPQVGMHSRQLILDADKGLYLAKNNGRNQVAA 333


>gi|311103803|ref|YP_003976656.1| c-di-GMP phosphodiesterase A [Achromobacter xylosoxidans A8]
 gi|310758492|gb|ADP13941.1| c-di-GMP phosphodiesterase A [Achromobacter xylosoxidans A8]
          Length = 858

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 88/169 (52%), Gaps = 10/169 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI QL+  D L+GL N +         I+      ++++++F D+D FKQ+ND  GHP+G
Sbjct: 428 RIRQLAFYDELTGLPNRNLLLAQAEQAIARAEPERKRVAVLFLDLDRFKQVNDTLGHPIG 487

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++  ++ +L  +      VGRL G+EF    L    +   + A     ++  +Q    
Sbjct: 488 DALLRDVAQRLRRLARAADIVGRLSGDEF--VMLMPDFEHGRLTAAAEHVLVALAQPFSV 545

Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            G +++ ++S GI+        + T++  AD A+Y AK +GRNR+  FS
Sbjct: 546 GGITLNPSVSIGISVFPENGRDMDTLLRHADMAMYQAKTAGRNRISFFS 594


>gi|206564659|ref|YP_002235422.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
 gi|198040699|emb|CAR56685.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
          Length = 521

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 95/207 (45%), Gaps = 19/207 (9%)

Query: 68  NLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           + ++ I S  + L +G++  S+L     ++   +   +  L+R D L+GL N      +L
Sbjct: 303 DRAIPIGSAMVVLAIGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRMLDVTL 362

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGR 174
                +       LS++F D+DYFK+ ND  GH  GD  +A +   +      P  +  R
Sbjct: 363 AREWRRAARSQHALSLLFIDVDYFKRYNDTQGHQAGDDALAAVGHCIAGCLRRPADYAAR 422

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI----AERCHK 230
            GGEEF           A  +A  +R  + +  I   +G    +T+S G+     ER   
Sbjct: 423 YGGEEFVVVLPDIDSDGAVTIAETIRTGVLDLGIRHDAGTVGRLTVSIGVTTSYPER--D 480

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVC 257
           + I   +  AD ALY AK+ GRNR+V 
Sbjct: 481 DNIQAALKLADDALYRAKEGGRNRIVV 507


>gi|115376279|ref|ZP_01463519.1| diguanylate cyclase [Stigmatella aurantiaca DW4/3-1]
 gi|115366704|gb|EAU65699.1| diguanylate cyclase [Stigmatella aurantiaca DW4/3-1]
          Length = 614

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 93/187 (49%), Gaps = 21/187 (11%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           KEL      +  LSR D L+ L N   F   L         Y   LS+V  DID+FK+IN
Sbjct: 432 KELARKREELLTLSRTDPLTSLSNRRYFEERLAEEFARARRYRSPLSLVMLDIDHFKRIN 491

Query: 144 DNFGHPVGDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           D +GHP GD+V   +A +S   +        + R GGEE  A    +S  +A      +R
Sbjct: 492 DTYGHPFGDEVLRAVALVSRTRLREV---DLLARYGGEELIALLPETSPADALRACERVR 548

Query: 201 KIIENSQIN--ISSGPSIHITISA--GIAERCHKEPIST---IIYRADQALYVAKKSGRN 253
           + IE+ +++   S G S  ++ +A  G+A      P+ T   ++  AD+ LY AK++GRN
Sbjct: 549 EAIESLRLDYRASDGTSQKVSCTASLGLAS-LPSVPLQTAEDLLRAADECLYKAKEAGRN 607

Query: 254 RVVCFSD 260
           RV  + +
Sbjct: 608 RVRQYEE 614


>gi|77361182|ref|YP_340757.1| two-component response regulator [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876093|emb|CAI87315.1| putative two-component response regulator protein with GGDEF domain
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 421

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 82/160 (51%), Gaps = 7/160 (4%)

Query: 107 DCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+GL N   F       L + N+K S+V  DID+FK IND FGH  GD+ +  +S+ +
Sbjct: 257 DHLTGLYNRRYFYQYAEKLLKNKNQKNSLVLLDIDFFKAINDEFGHDGGDQALKQVSNLI 316

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
              F     V R+GGEEFA        ++A    N   +   +    IS   ++ IT S 
Sbjct: 317 RTSFSNST-VARIGGEEFAIILTQVEVEQAEKCLNLFIQKFASYDFTISD-KTLSITASI 374

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           G+AE      ++  +  AD+ALY AK+ GRN VV  S ++
Sbjct: 375 GLAE-FQNTSLTAAMRVADRALYQAKEQGRNCVVLNSTLQ 413


>gi|89074256|ref|ZP_01160746.1| sensory box/GGDEF family protein [Photobacterium sp. SKA34]
 gi|89049960|gb|EAR55494.1| sensory box/GGDEF family protein [Photobacterium sp. SKA34]
          Length = 360

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 70/130 (53%), Gaps = 13/130 (10%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAAL 185
           S++F DID FKQ+ND +GH +GD+V+   +  +           R GGEEF     A  L
Sbjct: 231 SMMFIDIDNFKQVNDKYGHRLGDEVLRRFASLINKRVRKSDVFARWGGEEFVIFCPATPL 290

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
           G++    A LA  +R+ IEN+  +      + +T S G+AE    E     I RAD+AL 
Sbjct: 291 GAT----AKLAESIRECIENAVWD----NGMKVTCSLGVAE-LENEDYCHFIERADEALM 341

Query: 246 VAKKSGRNRV 255
            AK+ GRNRV
Sbjct: 342 KAKERGRNRV 351


>gi|126174337|ref|YP_001050486.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica OS155]
 gi|125997542|gb|ABN61617.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica OS155]
          Length = 546

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 12/159 (7%)

Query: 107 DCLSGLLNHSA-FISSLGSYN------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLNH+   +++   YN       ++ I  FD+D+FK++ND +GH  GDKV+   +
Sbjct: 384 DSLTGLLNHTQILVTARRCYNVARRINSQVCIAMFDLDHFKKVNDTYGHAGGDKVLLAFA 443

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L        F GR GGEEF        +  A    N +R+   +  + +  G    +T
Sbjct: 444 HLLQQSLRQTDFTGRYGGEEFMLVLPDMQKPLAIAKLNAIRESFSHI-VFVEDGVEFKVT 502

Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +S G+  ++ C  E     +  AD+ LY AK+ GRN++V
Sbjct: 503 LSGGLVFSDEC--EEFQDCLLLADKHLYEAKRLGRNQLV 539


>gi|257865253|ref|ZP_05644906.1| diguanylate cyclase [Enterococcus casseliflavus EC30]
 gi|257871581|ref|ZP_05651234.1| diguanylate cyclase [Enterococcus casseliflavus EC10]
 gi|257799187|gb|EEV28239.1| diguanylate cyclase [Enterococcus casseliflavus EC30]
 gi|257805745|gb|EEV34567.1| diguanylate cyclase [Enterococcus casseliflavus EC10]
          Length = 159

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 4/138 (2%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT----PMFVGRLGGEEFA 181
            EKL  +  D+D+FK+IND++GH  G++ + F S ++           + V R GGEEF 
Sbjct: 22  KEKLIFIMMDLDHFKRINDHYGHITGNRALIFFSKKITTFLSEAHQDQVEVYRYGGEEFL 81

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                S+ +         +  +  +++NI     I +  SAGI++      +  +I +AD
Sbjct: 82  VIFKDSTLKSVQKTILRFQAFLLKNKLNIGGERKITLYFSAGISKYDSSLDVYELINQAD 141

Query: 242 QALYVAKKSGRNRVVCFS 259
           QALY AKK GRN VV +S
Sbjct: 142 QALYAAKKRGRNTVVVYS 159


>gi|332527064|ref|ZP_08403146.1| hypothetical protein RBXJA2T_14166 [Rubrivivax benzoatilyticus JA2]
 gi|332111496|gb|EGJ11479.1| hypothetical protein RBXJA2T_14166 [Rubrivivax benzoatilyticus JA2]
          Length = 265

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 9/156 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N    +  L    E+        ++   D+D+FK +ND  GH  GD V+  ++
Sbjct: 109 DPLTGLGNRRFLMERLREEGERTQRLGRGFAVAIMDVDHFKAVNDAHGHETGDSVLQVIA 168

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +          GR GGEEF      +  + A  +   +R+ I  + I+      + +T
Sbjct: 169 QAVESGVRRYDHCGRWGGEEFLMLLPETPLEAARAIVERIRQAI--ADIDHVGEVRVSLT 226

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+AE    E  S  I RADQALY AK +GRNRV
Sbjct: 227 ASFGLAEHRDGEDFSATINRADQALYAAKAAGRNRV 262


>gi|329929417|ref|ZP_08283165.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
 gi|328936504|gb|EGG32949.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
          Length = 387

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 127/279 (45%), Gaps = 51/279 (18%)

Query: 19  LESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISIT 77
           L SF P+T   I+ SI+F      V+ +A ++L Y  +TP  G        L++ +I   
Sbjct: 122 LPSFLPYTLDPIWQSIYFD-----VLQLAALYLAYTQVTPRIGQPIKYALGLAVYVIWTI 176

Query: 78  ISLLLGYISGSILKEL----------------FISYNRISQLSR-------IDCLSGLLN 114
           +  +  Y SGS+   L                FI + RI +L +        D L+GL N
Sbjct: 177 LQAVHTY-SGSLSPALQGLALALPVLFYSIVFFILFRRIVELMQSIYRSAITDGLTGLYN 235

Query: 115 HSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVI----AFLSDQLVVVFG 167
              F+  L  Y     K+S +F DID FK++ND  GH   D+V+    A + ++L  +  
Sbjct: 236 RRHFMKHLDHYAAQELKISAIFCDIDNFKKLNDTQGHARADEVLKQVAAIMEEELEGIGI 295

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
           T    GR GGEE  A  +    + A +      ++   S + IS G S+   +  G+   
Sbjct: 296 T----GRYGGEELVALVVDRKAKPAQVAEKIRARVASESIVTISIGYSV---LRKGVRG- 347

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
                   ++ +AD+A+Y +K +G+N+V  +  ++ ++ 
Sbjct: 348 ------DELMKQADKAMYHSKTTGKNKVSDYRSLKTSST 380


>gi|288555085|ref|YP_003427020.1| response regulator receiver modulated diguanylate cyclase [Bacillus
           pseudofirmus OF4]
 gi|288546245|gb|ADC50128.1| response regulator receiver modulated diguanylate cyclase [Bacillus
           pseudofirmus OF4]
          Length = 446

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 115/234 (49%), Gaps = 35/234 (14%)

Query: 57  PFYGLEYILV-ENLSLVIISITISLL---LGYISGSILKELFISYNRISQL--------- 103
           P +G+E+++  E     +IS+  + L      I+G +     I+  +I++          
Sbjct: 216 PVFGIEHMIEGEGGEKTLISVNAAPLYDEFDQITGVLCSITDITAQKITEQQLLEANLLF 275

Query: 104 ---SRIDCLSGLLNHSAFISSL-GSYNEK------LSIVFFDIDYFKQINDNFGHPVGD- 152
              S ID L+G+ N  +F  +L   ++E       L+++  D+D FK  ND +GH  GD 
Sbjct: 276 KRKSEIDGLTGIPNRRSFDKTLQAEWDESERAGSLLTLIMLDLDSFKHFNDTYGHQKGDD 335

Query: 153 --KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209
             + +A   D+  VV     F+ R GGEEF     G+S +E+  LA ++++++   QI  
Sbjct: 336 CLRKVAVAIDR--VVQDHKGFLARYGGEEFTVIKRGASLEESRYLAEEIKEVVYQLQIPH 393

Query: 210 ----ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I +  ++ + ++    E C    +  +   ADQA+Y AKK GRN+V+ ++
Sbjct: 394 QTSVIDNVVTVSVGVAVKQNEHCRDSKM--LFDWADQAMYQAKKKGRNQVLVYN 445


>gi|254712420|ref|ZP_05174231.1| response regulator PleD [Brucella ceti M644/93/1]
 gi|254715492|ref|ZP_05177303.1| response regulator PleD [Brucella ceti M13/05/1]
 gi|261217227|ref|ZP_05931508.1| response regulator receiver modulated diguanylate cyclase [Brucella
           ceti M13/05/1]
 gi|261320098|ref|ZP_05959295.1| response regulator receiver modulated diguanylate cyclase [Brucella
           ceti M644/93/1]
 gi|260922316|gb|EEX88884.1| response regulator receiver modulated diguanylate cyclase [Brucella
           ceti M13/05/1]
 gi|261292788|gb|EEX96284.1| response regulator receiver modulated diguanylate cyclase [Brucella
           ceti M644/93/1]
          Length = 462

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 9/170 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S  R    S  D L+GL N           ++      + LSI+  D+D+FKQ+N+ +GH
Sbjct: 289 SMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQYGH 348

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+   S +L         + R GGEEF      +  Q A  +A  +R I+  +  
Sbjct: 349 GAGDHVLREFSGRLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRGIVAEAPF 408

Query: 209 NISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  G     +T+S G+A  R   + +  +  RA  AL  AK+SGRNR+V
Sbjct: 409 VLDDGKRRASLTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIV 458


>gi|91224635|ref|ZP_01259896.1| sensory box/GGDEF domain/EAL domain protein [Vibrio alginolyticus
           12G01]
 gi|91190523|gb|EAS76791.1| sensory box/GGDEF domain/EAL domain protein [Vibrio alginolyticus
           12G01]
          Length = 322

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 90/171 (52%), Gaps = 16/171 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++++L+  D L+GLLN  A   +         +++ ++VF DID FK +ND  GH  GD 
Sbjct: 155 QLAKLASSDPLTGLLNRKAIEENFNHQPQTEPSQQSALVFVDIDNFKAVNDQLGHHTGDT 214

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQINISS 212
           ++  +++ L  +  +   VGR+GG+EF      SS +E + L N  L  II     ++  
Sbjct: 215 LLINIANSLTELASSKSQVGRIGGDEFVILNWHSSREEISQLCNQLLDSIIPAMNQDLH- 273

Query: 213 GPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              + I +S G+   C     K+P + +  +AD A+Y  KK+G+N V  F+
Sbjct: 274 --KVTIGMSIGV---CLFNKGKQPFNEVYQKADHAMYEIKKNGKNGVQFFN 319


>gi|39936678|ref|NP_948954.1| diguanylate cyclase [Rhodopseudomonas palustris CGA009]
 gi|39650534|emb|CAE29057.1| putative diguanylate cyclase (GGDEF) with PAS/PAC domain
           [Rhodopseudomonas palustris CGA009]
          Length = 644

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 88/173 (50%), Gaps = 16/173 (9%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           KE+     R+++L+R D L+GL N      F++ + + +  LS++  D+D FK  ND+FG
Sbjct: 449 KEVEALNARLAELARTDGLTGLPNRRSLDGFVARVITSSPTLSVLMIDVDDFKGFNDHFG 508

Query: 148 HPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           H  GD  +     QL  +FG  +     F  R GGEEF     G+    A   A  L+  
Sbjct: 509 HQGGDDALR----QLGHLFGGLVASVHGFAARYGGEEFTIVLPGADAVAAVDFAESLQAA 564

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPI-STIIYR-ADQALYVAKKSGRN 253
           +    I   +    ++T+S GIA  C   P  ST++ R AD ALY AK+ GR+
Sbjct: 565 VRTLAIRNPASARGYLTVSIGIA--CGTAPCDSTVLLRDADIALYEAKRRGRD 615


>gi|326388043|ref|ZP_08209647.1| diguanylate cyclase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207544|gb|EGD58357.1| diguanylate cyclase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 392

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 91/188 (48%), Gaps = 19/188 (10%)

Query: 88  SILKELFISYNRISQLSRI----------DCLSGLLNHSAF-------ISSLGSYNEKLS 130
           S+  EL  S  RI +L +           D L+GL N  AF       +       E L 
Sbjct: 191 SVEGELAASEARIDRLQQRLEEARRLANHDHLTGLPNRRAFDGMFEREMREARLAGEGLC 250

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           + F DID+FK+IND  GHP GD+VI +++D L  +      V R GGEEFA    G S  
Sbjct: 251 VAFCDIDHFKRINDVHGHPAGDRVIRYVADVLGRISLAKCHVARHGGEEFAVLLRGVSVD 310

Query: 191 EAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           EA    +  R  + + ++   ++  P   +T S GIA+    +  S  +  AD ALY AK
Sbjct: 311 EAWAKLDAARAELADKRLVNRVNDMPLGRVTFSGGIADVFACKSRSAALKAADDALYAAK 370

Query: 249 KSGRNRVV 256
            +GRN +V
Sbjct: 371 NAGRNCIV 378


>gi|325290110|ref|YP_004266291.1| diguanylate cyclase/phosphodiesterase [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324965511|gb|ADY56290.1| diguanylate cyclase/phosphodiesterase [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 615

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 94/191 (49%), Gaps = 10/191 (5%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNE 127
            +T S L+  I+G  + E+    N++++    D L+   N       L        + NE
Sbjct: 425 DMTRSDLIFSINGKSITEINRIVNKMNEEMLKDSLTNTYNRRYIEERLLVDIFNASNQNE 484

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALG 186
            +S++  DIDYFK+IND +GH  GD V+   +  +   +     ++ R GGEEF      
Sbjct: 485 PISVILADIDYFKKINDTYGHLAGDHVLREFAKIIKQHIRKNTDWIARYGGEEFLIVLSD 544

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALY 245
           S+E  A  +A  +R+ +E ++I  ++  +I IT S G       K     +I  AD+ LY
Sbjct: 545 SNENIAYRVAEKVRQAVEKARIRYNN-KNICITASFGTYTLNSEKMTYEQLIDNADKNLY 603

Query: 246 VAKKSGRNRVV 256
            AK SGRN+ V
Sbjct: 604 RAKNSGRNKTV 614


>gi|309778339|ref|ZP_07673265.1| FHA/GGDEF domain protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308913905|gb|EFP59719.1| FHA/GGDEF domain protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 442

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 3/181 (1%)

Query: 77  TISLLLGYISGSILKELF-ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFD 135
            I ++LG ++    KEL   S +R   +   +  SG +             E  +I+FFD
Sbjct: 259 NIKVVLGTMNDITEKELLKTSASRDPLIGCFNRRSGDMTLVTTFQKFQKEEEFYTIIFFD 318

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D FK++ND +GH +GD V+  + +Q+     +   + R GG+EF     G S++     
Sbjct: 319 VDDFKKVNDRYGHDMGDYVLRHVCEQIEKEIRSSDMLFRWGGDEFLLICSGISKENIYAY 378

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
              LR++IE +   I  G   H+T+S G A     +      + RAD+++Y AK +GRN+
Sbjct: 379 IERLRRLIEKTDF-IFDGNKAHVTLSIGAAYYYKSDHDYQDALKRADRSVYKAKLAGRNK 437

Query: 255 V 255
           V
Sbjct: 438 V 438


>gi|322434504|ref|YP_004216716.1| diguanylate cyclase/phosphodiesterase [Acidobacterium sp. MP5ACTX9]
 gi|321162231|gb|ADW67936.1| diguanylate cyclase/phosphodiesterase [Acidobacterium sp. MP5ACTX9]
          Length = 790

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 105/219 (47%), Gaps = 28/219 (12%)

Query: 66  VENLSLVIISITISL-------LLGYIS----------GSILKEL--FISYNRISQLSRI 106
           V  L L I+S+  +        +LGY+S           ++++EL  F + +++      
Sbjct: 303 VSALGLAIVSVGAAAAVMGRHPVLGYMSLVGGFGLFALRTVVRELQSFKANDQLRDAVLR 362

Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N + F   +GS+  KL       +++F D+D FK +ND  GH VGD+++   +
Sbjct: 363 DHLTGLGNRALFREHVGSFVTKLVRPEMKVALMFVDLDRFKAVNDELGHGVGDRLLIETA 422

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +L         V RLGG+EF  A + + E  A   A DL   I         G  + +T
Sbjct: 423 GRLERASRKEDLVCRLGGDEFVVAMVIAGEAMARNRAEDLLDAIREP--FAVDGRVLKMT 480

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            S G+      + + +++ +AD A+Y AKK G+++   F
Sbjct: 481 ASIGVVLGDATDDVESLLRKADGAMYSAKKLGKDQAQVF 519


>gi|296157943|ref|ZP_06840776.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Burkholderia sp. Ch1-1]
 gi|295891711|gb|EFG71496.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Burkholderia sp. Ch1-1]
          Length = 689

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 13/166 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            +I +L+ +D L+GL N S         I          +++F D+D FK IND+ GH V
Sbjct: 253 GQIVRLATLDSLTGLPNRSTLTERIEHAIHRAQRQRSMCAVLFMDLDGFKTINDSLGHSV 312

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILANDLRKIIENSQI 208
           GD+V+   + +L++       V RLGG+EF   A  LGS E   A+    L ++     +
Sbjct: 313 GDQVLTAFAQRLLLCVRASDTVARLGGDEFVVLAEDLGSREDAGALAEGVLDRM--RMGM 370

Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
              S P + +  S GIA   H  + + +++  AD A+Y AK++GR+
Sbjct: 371 WTDSQP-LQVMPSIGIALFPHDGDTVDSLLKNADAAMYEAKRAGRS 415


>gi|262276540|ref|ZP_06054349.1| hypothetical GGDEF domain family protein [Grimontia hollisae CIP
           101886]
 gi|262220348|gb|EEY71664.1| hypothetical GGDEF domain family protein [Grimontia hollisae CIP
           101886]
          Length = 518

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 8/158 (5%)

Query: 106 IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+ + N +A    L         Y   L +   DID+FK +ND +GH VGDKV+  +
Sbjct: 360 LDPLTKVYNRAALDDRLEHEYRCWMRYQTPLCLAMIDIDHFKGVNDQYGHLVGDKVLKVV 419

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  +        F+ R GGEEF      +  +   +L N++R+ I            + I
Sbjct: 420 ARTIHQCLRDTDFIARFGGEEFVVLLPNTDGETRNVLLNNVRETIAKLPFKFKDN-RLTI 478

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T+S G +     +    ++ RAD ALY AK +GRN+++
Sbjct: 479 TVSIGASMFKDNDNTVDVLERADNALYNAKDNGRNKLI 516


>gi|288549691|ref|ZP_06390767.1| protein gmr [Enterobacter cancerogenus ATCC 35316]
 gi|288317934|gb|EFC56872.1| protein gmr [Enterobacter cancerogenus ATCC 35316]
          Length = 663

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 95/185 (51%), Gaps = 18/185 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           SG+ + E   +  R+  L+  D ++GL N +A        I++ G  + ++ IV+ D+D 
Sbjct: 219 SGTDITEERRAQERLRVLANTDTITGLPNRNAIHELISDAINARG--DTQVGIVYLDLDN 276

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAI 194
           FK++ND +GH  GD+++  ++  ++        + RLGG+EF    +  + GS E  A+ 
Sbjct: 277 FKKVNDAYGHMFGDQLLQAVALAILSCLDEGQTLARLGGDEFIVMASDTSQGSLEAMASR 336

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +   LR+      I + +G S+ I ++       H     ++I  AD A+Y AK+SGR +
Sbjct: 337 ILTRLRQPFRIGLIEVYTGCSLGIALAPQ-----HGTDRESVIRNADTAMYTAKESGRGK 391

Query: 255 VVCFS 259
              FS
Sbjct: 392 FCVFS 396


>gi|223984843|ref|ZP_03634951.1| hypothetical protein HOLDEFILI_02250 [Holdemania filiformis DSM
           12042]
 gi|223963182|gb|EEF67586.1| hypothetical protein HOLDEFILI_02250 [Holdemania filiformis DSM
           12042]
          Length = 543

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 13/164 (7%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           S  D L+GL N   F   L      +++S+++ D+DYFK +ND  GH  GD+ +   +  
Sbjct: 369 SNTDFLTGLYNRRHFYEYLAQNRGQQRVSLIYADLDYFKLLNDTQGHQAGDEALVLTAVL 428

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSS--EQEAAILANDLRKIIENSQINISSGPSIHIT 219
           L   F    F+ RLGG+EF    LG+    +  A     LRK+ E  +       SIH +
Sbjct: 429 LKQCFPD-AFLTRLGGDEFLILYLGNWALTELTARSQTFLRKMEEQFRSR-----SIHPS 482

Query: 220 ISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++A I      +P   +  ++ R+DQALY AK+ GRN+V  + +
Sbjct: 483 LTASIGIAQTDDPQLSVDKLMQRSDQALYQAKQQGRNQVRVYGE 526


>gi|222111775|ref|YP_002554039.1| response regulator receiver modulated diguanylate cyclase
           [Acidovorax ebreus TPSY]
 gi|221731219|gb|ACM34039.1| response regulator receiver modulated diguanylate cyclase
           [Acidovorax ebreus TPSY]
          Length = 341

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 88/183 (48%), Gaps = 11/183 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
            + +EL ++   ++++  +D L+GL+N   F   L S           L+++  D+D+FK
Sbjct: 148 ELTEELHVANQHLNEMVEMDPLTGLVNRRGFDRILHSEILAARRDGVPLTLMLCDLDHFK 207

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDL 199
           + ND  GH  GD  +  +   L  V   P  V  R GGEEFA     +    A   A  L
Sbjct: 208 RYNDTLGHVQGDACLKEVGRVLHDVCMRPRDVASRYGGEEFALILPNTPRSGAMTFARAL 267

Query: 200 RKIIENSQINISSGPSIH-ITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
            K++++  I     P+   +T+S GI      +  S  T++ RAD+ALY AK  GR+R  
Sbjct: 268 GKLLKSRAIAHPGSPNGETLTLSGGITTCVPDDGTSAETMLMRADEALYAAKAQGRDRFF 327

Query: 257 CFS 259
            F 
Sbjct: 328 SFE 330


>gi|78358456|ref|YP_389905.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78220861|gb|ABB40210.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 935

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 91/177 (51%), Gaps = 15/177 (8%)

Query: 102 QLSRI---DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           QL R+   D L+GL N           I         L++VF D+D FK++ND  GH VG
Sbjct: 382 QLERVAHYDLLTGLPNRLLLGDRLKQAIRQTRRRGMHLAVVFIDLDGFKEVNDQHGHAVG 441

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DK+++ LS ++  V      + RLGG+EF A  L   +   ++   D  ++IE +   + 
Sbjct: 442 DKLLSVLSRRMTQVLREDDTLARLGGDEFVAVLLDLPDISVSVPILD--RLIEVAAQPVP 499

Query: 212 SGPSI-HITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            G ++  ++ S G++     E I    ++ +ADQA+Y AK++G+NR   F   ++ T
Sbjct: 500 IGDALCEVSASIGVSYYPQGEDIDADQLLRQADQAMYRAKQAGKNRYHVFDTEKDRT 556


>gi|39997726|ref|NP_953677.1| GGDEF domain-containing protein [Geobacter sulfurreducens PCA]
 gi|39984618|gb|AAR36004.1| GGDEF domain protein [Geobacter sulfurreducens PCA]
 gi|298506660|gb|ADI85383.1| diguanylate cyclase [Geobacter sulfurreducens KN400]
          Length = 411

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 24/171 (14%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+GL +  A    L     + S+   D+D+FK+ ND +GH VGD+V+  ++ +L  V 
Sbjct: 241 DELTGLPSRRALSEQLTWLGRRYSVAMVDVDHFKKFNDTYGHDVGDQVLRLVAAKLRGVG 300

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG--PS--------- 215
           G      R GGEEF       S +E      +LR+ I + Q+ + S   P+         
Sbjct: 301 GGGKAY-RYGGEEFTILFPHRSREEVLGRLEELRRAIADYQMRLRSSDRPASSREGKRQR 359

Query: 216 ---------IHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255
                    + +TIS G+AE     + P + +I  AD ALY AK  GRN+V
Sbjct: 360 SGMPQGRGCVSVTISIGVAESSSELRRP-ADVIKAADDALYRAKGRGRNQV 409


>gi|50122546|ref|YP_051713.1| hypothetical protein ECA3625 [Pectobacterium atrosepticum SCRI1043]
 gi|49613072|emb|CAG76523.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 610

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 74/157 (47%), Gaps = 11/157 (7%)

Query: 107 DCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           D L+GL N S+F         +     + +K  +   DID FK IND FGH  GD V+  
Sbjct: 452 DFLTGLPNRSSFFEQASAFFLLRQQNQHADKSCLAIIDIDLFKNINDQFGHLAGDAVLKE 511

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           L+  + +       V R+GGEEF         Q A +    +RK IE   +      +++
Sbjct: 512 LAMLMRMSLRQEDLVARIGGEEFIILLKDVPYQTAVMAIERIRKAIEQHTLEYDR-QNLN 570

Query: 218 ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
            TISAGIA  R     +   I  AD+ LY AK+ GRN
Sbjct: 571 FTISAGIAAYRSDLASVEDWIQLADENLYAAKRQGRN 607


>gi|114049396|ref|YP_739946.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella sp. MR-7]
 gi|113890838|gb|ABI44889.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella sp. MR-7]
          Length = 1209

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 22/172 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           NR+S  SR++ +       AF+S       +++++F D+D+FK IND  GH VGD ++  
Sbjct: 794 NRLSLQSRLETVF----QEAFVS-----QTQIAVMFIDMDHFKNINDTLGHHVGDMLLLE 844

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK------IIENSQINIS 211
           ++ +L  +  +   V RLGG+EF      +   E A +A  LR       II+N  ++  
Sbjct: 845 VARRLKNIVSSDDIVARLGGDEFVVVLSDTDHDEVAKVAEALRSGLNQTYIIDNKPLH-- 902

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           S PSI I++          + +  ++  AD A+Y AK +GRN    F+   N
Sbjct: 903 SSPSIGISLFP-----TDGDSVEALMKNADMAMYRAKAAGRNNYQFFTAAMN 949


>gi|94499383|ref|ZP_01305920.1| GGDEF domain protein [Oceanobacter sp. RED65]
 gi|94428137|gb|EAT13110.1| GGDEF domain protein [Oceanobacter sp. RED65]
          Length = 311

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 7/156 (4%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G  N  A   SL         +   L+I+  DID+FK IND FGH VGD+++    
Sbjct: 144 DPLTGAGNRIALNESLQREMELAKRHGHDLAILMLDIDHFKTINDRFGHLVGDEMLKATV 203

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + +           R GGEEF       +   A ++A  +R  +  + +       +  T
Sbjct: 204 NTITQCVRQTDICFRYGGEEFVVILNNCNIANARLIAERIRMDVSETVLQTQDDNFLQAT 263

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           IS G++     + +  +I+RAD ALY AK SGRN+V
Sbjct: 264 ISCGLSVYDANDTLENLIHRADIALYKAKNSGRNKV 299


>gi|307151520|ref|YP_003886904.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
 gi|306981748|gb|ADN13629.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
          Length = 324

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 84/182 (46%), Gaps = 13/182 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L  +  ++ +L  ID L+ + N   F          L    + L+++F DIDYFK  N
Sbjct: 136 QQLEAANEKLQRLVSIDGLTQIHNRRRFDECIQFEWQRLAREEQWLALIFIDIDYFKLYN 195

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD  +  ++  +      P  F  R GGEEFA     +    A  +A  +R  
Sbjct: 196 DTYGHQAGDHCLQQVAQTIQNTLQRPADFAARYGGEEFAVILPNTHLAGAKKVAEKIRFN 255

Query: 203 IENSQINISSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IEN  I      S+   +SA +   C     +E    +I +ADQALY AK  GRN +V  
Sbjct: 256 IENLHIPHQKS-SVSQWVSASLGVVCLIPDAQETPKQLIKKADQALYQAKLQGRNCLVTV 314

Query: 259 SD 260
            +
Sbjct: 315 DE 316


>gi|158338941|ref|YP_001520118.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158309182|gb|ABW30799.1| diguanylate cyclase (GGDEF) domain protein [Acaryochloris marina
           MBIC11017]
          Length = 449

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 11/183 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           +L  S   + +L+ +D L+ + N   F       I         +S++  DID+FK++ND
Sbjct: 254 QLEQSQQDLYRLATLDGLTEVYNRREFNRWLLVEIERSQRGEHPVSLIMVDIDHFKRLND 313

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD  +  ++  L         V R GGEEF      ++  ++ ++A  +R  I 
Sbjct: 314 TYGHQAGDLALCEVAQLLQREVRPGDIVCRYGGEEFGVILPKATSADSWVIAERIRLAIA 373

Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
              + + S   I +T S G+A    H +    ++ +ADQALY AK  GRNRV      E 
Sbjct: 374 EKSVVLPSQQHIDMTASLGVATYPDHADCKERLVKQADQALYTAKYQGRNRV---HSAEV 430

Query: 264 NTC 266
           N C
Sbjct: 431 NEC 433


>gi|91791613|ref|YP_561264.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91713615|gb|ABE53541.1| GGDEF domain [Shewanella denitrificans OS217]
          Length = 417

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 31/194 (15%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQIN 143
           +++  I+   F++Y         D L+GL +  A  +   S   K S+   DID+FK+ N
Sbjct: 231 FLATVIIDSYFLAYR--------DELTGLPSRRALFNLSLSLGRKYSVAMVDIDHFKKFN 282

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA---------------ALGSS 188
           D +GH VGD+V+  ++ +L  V G      R GGEEF                     S 
Sbjct: 283 DTYGHDVGDQVLKLVAAKLAQVTGGGK-AFRYGGEEFTIVFPRKEVKRVFPHLDDVRESV 341

Query: 189 EQEAAILANDLRKIIENSQIN---ISSGP----SIHITISAGIAERCHKEPISTIIYRAD 241
           E+   +L  + RK  E+ Q +       P    ++ +T+S G A+    +     +  AD
Sbjct: 342 EEYEIVLREEKRKGKEDKQASKKRTKKAPAKQRTVSVTVSIGCAQHQADQSFEQCMKEAD 401

Query: 242 QALYVAKKSGRNRV 255
           +ALY AK+ GRN+V
Sbjct: 402 KALYKAKERGRNQV 415


>gi|57239049|ref|YP_180185.1| response regulator PleD [Ehrlichia ruminantium str. Welgevonden]
 gi|58578992|ref|YP_197204.1| response regulator PleD [Ehrlichia ruminantium str. Welgevonden]
 gi|57161128|emb|CAH58041.1| putative response regulator component of a two-component regulatory
           system [Ehrlichia ruminantium str. Welgevonden]
 gi|58417618|emb|CAI26822.1| Putative regulatory component of sensory transduction system
           [Ehrlichia ruminantium str. Welgevonden]
          Length = 461

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 12/160 (7%)

Query: 107 DCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+G  N        H+    SL   ++ +S++  DID+FK++ND FGH +GD+++   
Sbjct: 297 DPLTGCFNRRYFDMHFHNMITESLCK-DKTISLMILDIDHFKEVNDTFGHTIGDELLRQF 355

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
            +++         + R GGEEF      +    A      +  ++  +    S G  IH 
Sbjct: 356 KNRVSDNIRITDLLARFGGEEFVIVLPDTDINTAYQTGLRILSLVGETPFKTSIG-DIHK 414

Query: 219 TISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256
           T+S GI E  H +   I  +I RAD+ LY AK +GRN++V
Sbjct: 415 TVSIGITEMLHSDINNIKQLIDRADKCLYEAKNTGRNKIV 454


>gi|289666116|ref|ZP_06487697.1| Putative signal protein with GGDEF domain [Xanthomonas campestris
           pv. vasculorum NCPPB702]
          Length = 973

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 83/159 (52%), Gaps = 14/159 (8%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN S  + ++             L++V  D+D+FKQ+ND  GH VGD V+A + 
Sbjct: 809 DALTGLLNRSGILEAMAEELQGCAHGQHPLAVVLIDLDHFKQVNDGHGHLVGDAVLAKVG 868

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSI 216
            +L         VGR GGEE      G ++Q      + LR I E   +    + +   +
Sbjct: 869 ARLTACLRDSDKVGRYGGEELLLLLPGMTQQS----QHRLRAIHEALSLAPYEVGTARPL 924

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +T S G++     +  ++++ RAD+ALY AK+SGRNR+
Sbjct: 925 QVTCSVGVSWFRVGDTAASLLARADEALYRAKRSGRNRI 963


>gi|260222160|emb|CBA31448.1| hypothetical protein Csp_F37580 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 366

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 94/177 (53%), Gaps = 23/177 (12%)

Query: 96  SYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGH 148
           + NR +S LS  D L+ L N  A   ++  +  +       +++  D+D+FK++ND++GH
Sbjct: 188 TENRELSALSLTDPLTRLGNRRALERAVEQWQMQSELGTPAALLMVDVDHFKRVNDSYGH 247

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+V+  L+ QL         V R GGEEFA    G+    A+ +A  +  ++++  +
Sbjct: 248 EEGDRVLQELARQLQASKRGSDVVVRYGGEEFALWLPGAGPDGASAIAQRVHLLVQD--V 305

Query: 209 NISSGPSIHITISAGIAERCHKEP---------ISTIIYRADQALYVAKKSGRNRVV 256
            +   P   +T+S G++  C ++          ++ ++++AD ALY AK +GRNR +
Sbjct: 306 RVHKKP---VTVSIGVS--CAQQTLHQGRDMVFLTRLLHQADLALYRAKSAGRNRTM 357


>gi|297568620|ref|YP_003689964.1| response regulator receiver modulated diguanylate cyclase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924535|gb|ADH85345.1| response regulator receiver modulated diguanylate cyclase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 305

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 13/164 (7%)

Query: 106 IDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+G+ N   F         +       LS++  DID+FK  NDN+GH  GDK +  +
Sbjct: 142 LDGLTGIPNRRHFDELFDKEMRRCLRNGLPLSVIMTDIDHFKGFNDNYGHGAGDKCLQKV 201

Query: 159 SDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP 214
           +  L      P   + R GGEEF A   G+    A  +A  LR  +E   I   + S+ P
Sbjct: 202 AGALSGSLVRPGDSICRYGGEEFVALLPGTDAAGAREVAERLRVAVEALAITHEHSSAAP 261

Query: 215 SIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            + +++ A      R  +     ++ RADQALY AK++GRNRV 
Sbjct: 262 VVTVSLGAATLDPRRDSETDRQPLLSRADQALYAAKEAGRNRVA 305


>gi|254974566|ref|ZP_05271038.1| putative signaling protein [Clostridium difficile QCD-66c26]
 gi|255091955|ref|ZP_05321433.1| putative signaling protein [Clostridium difficile CIP 107932]
 gi|255313689|ref|ZP_05355272.1| putative signaling protein [Clostridium difficile QCD-76w55]
 gi|255516373|ref|ZP_05384049.1| putative signaling protein [Clostridium difficile QCD-97b34]
 gi|255649473|ref|ZP_05396375.1| putative signaling protein [Clostridium difficile QCD-37x79]
 gi|306519550|ref|ZP_07405897.1| putative signaling protein [Clostridium difficile QCD-32g58]
          Length = 514

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 16/176 (9%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
            Y  +   +  D L+ + N   F        + + G   + L I+  D+D FK+INDNFG
Sbjct: 339 KYEELRTRAESDSLTNIYNKGTFEKLVEETIVMNTGDKKDALFII--DLDDFKEINDNFG 396

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206
           HP GD V+   +D++   FG    VGR+GG+EF        +E      A +L +++ ++
Sbjct: 397 HPFGDFVLKTFADKIQASFGNKDLVGRIGGDEFVVYMQDYVTEVNLHKKAKELNRVLSDN 456

Query: 207 QINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260
             ++S   S   ++S GIA R  ++  S   +   AD+ALY  K SG+N    F +
Sbjct: 457 YTDLSF--SFDSSVSIGIA-RYPQDGTSFFELFKNADRALYSIKASGKNSYCLFEE 509


>gi|218681177|ref|ZP_03529074.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 894]
          Length = 532

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 102/212 (48%), Gaps = 29/212 (13%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNR-------ISQLSRIDCLSGLLNHSAF--- 118
           LSL   ++ ++ L+ +I   +L +L   + R       ++ L+  D L+GL N S+F   
Sbjct: 52  LSLTAATLILATLILFIP--LLVKLRTEHRRTLDFEIKLTHLAHTDTLTGLGNRSSFNEA 109

Query: 119 ----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
                +SL       S++  D+D+FK  ND+FGHP GD V++ ++  L   F     V R
Sbjct: 110 LNGLFASLERTGAGFSMLLVDLDHFKATNDSFGHPAGDAVLSHVASALQKTFRAGDIVAR 169

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-----GPSIHITISAGIA-ERC 228
           LGG+EFAA   G S+      A  L  I E +   I++     G  + ++ S G A    
Sbjct: 170 LGGDEFAALLPGISD------AATLEGIAERAVAAIATECHFEGRLLPVSASLGGALVPG 223

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           H    + ++  AD ALY AK   RN  V F +
Sbjct: 224 HASDEAALMRTADLALYAAKAR-RNTAVIFDE 254


>gi|254458309|ref|ZP_05071735.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207085145|gb|EDZ62431.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 418

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 92/189 (48%), Gaps = 15/189 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           K+L  +  ++  +S  D L+ L N   F       +         ++ +  DID+FKQ N
Sbjct: 224 KKLQRANKKLENVSYTDSLTSLHNRRYFNFIYDRELKRAKRTKSYITFMMLDIDFFKQYN 283

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD  +  +S  L      P  +V RLGGEEF    + + E  +A LA ++   
Sbjct: 284 DTYGHLEGDFALKSVSKVLRDSLKRPSDYVFRLGGEEFGVVLIDTDESNSARLAREICDA 343

Query: 203 IENSQI-NISSGPSIHITISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +I + SS  +  +TIS G    +A+    E I  +I RAD+ LY AK+SGRN  + 
Sbjct: 344 VRAREIKHESSKANEFLTISIGVVCCVADEALDEEI--LISRADEMLYKAKESGRNGYII 401

Query: 258 FSDIENNTC 266
            +++   T 
Sbjct: 402 TTNVSEATA 410


>gi|166712018|ref|ZP_02243225.1| GGDEF family protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 954

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 8/156 (5%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN S  + ++ +           L++V  D+D+FKQ+ND+ GH VGD V+A + 
Sbjct: 790 DALTGLLNRSGILEAMAAELQGCAHGEHPLAVVLIDLDHFKQVNDDHGHLVGDAVLAKVG 849

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +L         VGR GGEE      G + Q    L   + + +  +   + +   + +T
Sbjct: 850 ARLTACLRDSDKVGRYGGEELLLLLPGMTRQSQRRL-RAIHEALSLAPYEVGAARPLQVT 908

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G++     +  ++++ RAD+ALY AK+SGRNR+
Sbjct: 909 CSVGVSWFRVGDTAASLLARADEALYRAKRSGRNRI 944


>gi|71908661|ref|YP_286248.1| diguanylate cyclase [Dechloromonas aromatica RCB]
 gi|71848282|gb|AAZ47778.1| diguanylate cyclase [Dechloromonas aromatica RCB]
          Length = 346

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 71/125 (56%), Gaps = 4/125 (3%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID FK +NDNFGH +GD+V+  L+  +   F     + R GGEEF  A L  +E++ A+
Sbjct: 205 DIDRFKLVNDNFGHLIGDEVLIMLAQVMNQSFRFDDQLFRFGGEEF-IALLQPTEEKFAL 263

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            A  L +   N +  + S    H+T+S G +     +  +  I RAD+ALY AK+ GRNR
Sbjct: 264 AA--LERFRTNVEKQLFSRVG-HVTVSIGFSSLMPNDTPTDAIDRADEALYYAKRHGRNR 320

Query: 255 VVCFS 259
           V C+ 
Sbjct: 321 VDCYE 325


>gi|295095698|emb|CBK84788.1| diguanylate cyclase (GGDEF) domain [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 448

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 79/162 (48%), Gaps = 17/162 (10%)

Query: 107 DCLSGLLNHSAFISSLGS----YNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N   F  +L        EK  SI+  DID FK INDN+GH VGD+VI  + D 
Sbjct: 285 DPLTQIYNRKYFYEALPRIRSLRTEKGASIMMLDIDNFKSINDNWGHLVGDRVILAVVDI 344

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH---- 217
           +           RLGGEEF      +  ++A  +A  +R+ ++       +GP  H    
Sbjct: 345 IKDSIRDNDIFARLGGEEFGLLLPDTDGKQAIAVAERIRQNVQQ-----RTGPGYHYALP 399

Query: 218 --ITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
             +T+S G+         S  I R  D+ALY AK +G+NR+V
Sbjct: 400 VKVTLSIGVCSAIQNNVNSNDIMRDVDEALYEAKHNGKNRIV 441


>gi|190573536|ref|YP_001971381.1| putative two-component system sensor kinase/response regulator fusion
            protein with GGDEF signalling domain [Stenotrophomonas
            maltophilia K279a]
 gi|190011458|emb|CAQ45076.1| putative two-component system sensor kinase/response regulator fusion
            protein with GGDEF signalling domain [Stenotrophomonas
            maltophilia K279a]
          Length = 1008

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 9/159 (5%)

Query: 104  SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
            +R D L+GL N  AF  +L             L +V  DID+FK +ND   H +GD V+ 
Sbjct: 847  AREDALTGLANRRAFDETLARDFARSQRSGHPLCLVVLDIDHFKDVNDRHSHSIGDAVLV 906

Query: 157  FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             ++  +           R GGEEFA     +  +EAA L   LR +  +   + +    +
Sbjct: 907  QVARLIAAACRDSDLPARTGGEEFALLLNDTRLEEAAQLCARLRGLFHDHP-DWAGVAGL 965

Query: 217  HITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNR 254
             +T SAG+ E    +    ++Y RAD+ALY AK  GR+R
Sbjct: 966  RVTFSAGLVELDADDRTPALLYQRADRALYRAKSDGRDR 1004


>gi|167625210|ref|YP_001675504.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167355232|gb|ABZ77845.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 354

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 84/168 (50%), Gaps = 19/168 (11%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDK 153
           +S LS  D L+G LN      SL + +EK        I   DIDYFK +ND  GH VGD+
Sbjct: 173 LSYLSTRDSLTGALNRHQLDVSLITASEKAKMEQATCIAAIDIDYFKDVNDVHGHDVGDQ 232

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           VI  +   +         + RLGG+EF      +++ E+A+      KI+      ++ G
Sbjct: 233 VIKTVVKLINCHCRKADLLFRLGGDEFLLL-FDNTKAESAL------KIMRTIGQEVAKG 285

Query: 214 -----PSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                P +  +T+S GIAE    E +   + RAD ALY AK +GRN+V
Sbjct: 286 IVETCPEVDSVTLSTGIAESIVGEELELWVKRADLALYEAKHAGRNQV 333


>gi|167031415|ref|YP_001666646.1| diguanylate cyclase [Pseudomonas putida GB-1]
 gi|166857903|gb|ABY96310.1| diguanylate cyclase [Pseudomonas putida GB-1]
          Length = 427

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 118/253 (46%), Gaps = 34/253 (13%)

Query: 28  MIYFSIFFSIFIATVI--FIANIFLFYIGLTPFYGLEYILVENLSL-VIISITISLLLGY 84
           M+Y  +F  +FI  V+    A   L    +T   G+ ++L +   L   ++I  S ++  
Sbjct: 171 MVY-PLFIGVFILLVVQYLRAPRPLHAALITGLLGIFWMLPQTFILPFTLNIMCSQVMLM 229

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           I+ ++  E +       Q++  D L+GL    A    +        I   D+D+FK+ ND
Sbjct: 230 IAAAVAHEAY-------QMAFRDELTGLPGRRALNERMQRLGRNYVIAMTDVDHFKKFND 282

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD+V+  ++ +L  V        R GGEEFA    G + +E       +R++I 
Sbjct: 283 THGHDVGDQVLRLVASRLSKV-TGGGRAYRYGGEEFALVFAGKTAEECVPHVEAVREVIA 341

Query: 205 NSQINI-------------------SSGPSIHITISAGIAERC--HKEPISTIIYRADQA 243
           N  +++                   S G ++ +TIS G+AER   H+ P   ++  ADQA
Sbjct: 342 NYVMHLRDQHNRPQDDTAGRQRRAGSGGGTVSVTISIGVAERHADHRNP-EAVLKSADQA 400

Query: 244 LYVAKKSGRNRVV 256
           LY AK +GRN V+
Sbjct: 401 LYSAKGAGRNCVM 413


>gi|89094508|ref|ZP_01167447.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor [Oceanospirillum sp. MED92]
 gi|89081244|gb|EAR60477.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor [Oceanospirillum sp. MED92]
          Length = 402

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 15/166 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +IS  +  D L+ L N   F       I      N  LS+   D+D+FK++ND  GH  G
Sbjct: 240 KISYFANYDPLTDLFNRRHFFDQFNLAIREAEESNTPLSLCVCDLDHFKEVNDTLGHQAG 299

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINI 210
           D ++   ++ L        FVGR GG+EF      ++  +AA +   +R +  E + + +
Sbjct: 300 DNILTTFAEILRKNIRENDFVGRFGGDEFVICFPDATSDQAAEIVERIRTRFAEYNALKL 359

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRV 255
           S      +T + GIAE  H      ++  +AD+ALY AK++GRN+V
Sbjct: 360 S------VTSTFGIAELSHAANTDDLLLEKADKALYKAKENGRNQV 399


>gi|332531213|ref|ZP_08407126.1| diguanylate cyclase [Hylemonella gracilis ATCC 19624]
 gi|332039320|gb|EGI75733.1| diguanylate cyclase [Hylemonella gracilis ATCC 19624]
          Length = 527

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 86/191 (45%), Gaps = 23/191 (12%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHS----AFISSLGSYNEK---LSIVFFDIDYFKQI 142
           L++L     R+S   R D L+G LN      AF+  L +   K   L +   DID FK++
Sbjct: 336 LRKLQAELERLSAQVRHDGLTGALNRQGLDEAFVRELSTVRRKDAPLCVALLDIDNFKRL 395

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILAND 198
           ND  GH  GD  +  L             + R GGEEF        L  + +    L  +
Sbjct: 396 NDARGHETGDVALQHLVAVAKENLRPQDTLARYGGEEFVILLPETGLEQAMEVMIRLQRE 455

Query: 199 LRK---IIENSQ-INISSG--------PSIHITISAGIAERCHKEPISTIIYRADQALYV 246
           L K   +    Q +   SG          I IT SAG+A+    E     ++RADQA+Y+
Sbjct: 456 LSKRFFLARPKQGVKTESGGEVASADQEKIFITFSAGVAQLTVDETAEQALHRADQAMYL 515

Query: 247 AKKSGRNRVVC 257
           AK++G+NRVV 
Sbjct: 516 AKRAGKNRVVA 526


>gi|330830443|ref|YP_004393395.1| PAS:GGDEF domain-containing protein [Aeromonas veronii B565]
 gi|328805579|gb|AEB50778.1| PAS:GGDEF domain protein [Aeromonas veronii B565]
          Length = 804

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 11/168 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKV 154
           + +L+  D L+GL N       L    E+     L+++F D+D+FK IND FGH  GD +
Sbjct: 493 MRRLAFYDPLTGLPNRRLLQQRLKELMEQETPRPLALMFIDLDHFKPINDTFGHETGDIL 552

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS-QINISSG 213
           +  +++++         V RLGG+EF    L  S  E   +A+ L + + +  Q+    G
Sbjct: 553 LNMVAERMSHCVRKQDLVARLGGDEF-VILLPDSGDEVLAVADKLHQQLRHPFQL---EG 608

Query: 214 PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + I+ S G+A    H E   T+++ ADQA+Y AK  GR RV  +++
Sbjct: 609 QELLISSSIGLALYPEHGEDAKTLMHHADQAMYQAKNRGRGRVCLYTE 656


>gi|262395423|ref|YP_003287276.1| GGDEF domain protein [Vibrio sp. Ex25]
 gi|262339017|gb|ACY52811.1| GGDEF domain protein [Vibrio sp. Ex25]
          Length = 412

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 78/175 (44%), Gaps = 22/175 (12%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           QL+  D L+ + +  A    L    +K +I   D+D+FK+ ND +GH  GD V+  ++ +
Sbjct: 236 QLAFTDSLTRVPSRRALDLDLKHMGKKFTIAMLDVDHFKKFNDTYGHDTGDDVLKMVASR 295

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI------------- 208
           L    G    V R GGEEF     G    E      + RK I   ++             
Sbjct: 296 LTKTPGGAK-VYRFGGEEFTIVFKGKYADECKEFLEEARKSIAEYEMILRDEESRPDNHK 354

Query: 209 --------NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                   + S   S+ +T S G A+  + +    +I  AD+ALY AKK+GRN V
Sbjct: 355 QGQKKRGNDSSRRKSVFVTASFGAADSKNGQAPQDVIKLADEALYKAKKAGRNCV 409


>gi|225629101|ref|ZP_03787134.1| GGDEF domain protein [Brucella ceti str. Cudo]
 gi|260167407|ref|ZP_05754218.1| response regulator PleD [Brucella sp. F5/99]
 gi|261756817|ref|ZP_06000526.1| GGDEF:Response regulator receiver [Brucella sp. F5/99]
 gi|225615597|gb|EEH12646.1| GGDEF domain protein [Brucella ceti str. Cudo]
 gi|261736801|gb|EEY24797.1| GGDEF:Response regulator receiver [Brucella sp. F5/99]
          Length = 462

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 9/170 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S  R    S  D L+GL N           ++      + LSI+  D+D+FKQ+N+ +GH
Sbjct: 289 SMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQYGH 348

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+   S +L         + R GGEEF      +  Q A  +A  +R I+  +  
Sbjct: 349 GAGDHVLREFSGRLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRGIVAEAPF 408

Query: 209 NISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  G     +T+S G+A  R   + +  +  RA  AL  AK+SGRNR+V
Sbjct: 409 VLDDGKRRASLTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIV 458


>gi|218672484|ref|ZP_03522153.1| putative sensory box/GGDEF family protein [Rhizobium etli GR56]
          Length = 305

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 106/216 (49%), Gaps = 23/216 (10%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI-----LKELFISYNRISQLSRID 107
           IG  P    + IL+E   L ++        G ++G +     + EL  S  +I Q++  D
Sbjct: 8   IGWFPPENGQSILLETRKLAVLGAG-----GEVTGVLGVSRDVTELNASREKIRQMAFYD 62

Query: 108 CLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            ++ L N   F       +S   S   +  ++  DID+FK +ND  GHPVGD+++  ++ 
Sbjct: 63  PVTSLPNRLLFNERLQKVVSDASSQRRRTGVMLIDIDHFKVVNDTMGHPVGDQLLCQVAT 122

Query: 161 QLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +L         V RLGG+EFA     + +++    +  + L +  E+  ++   G  +++
Sbjct: 123 RLKKSVRDLDTVARLGGDEFAILLPEIQTTDDLDWVACSILERFKESFLLD---GKEVYV 179

Query: 219 TISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
           + S GIA        ++ ++  AD A+Y+AK+SGRN
Sbjct: 180 SCSVGIAISPDDSTDVNDLVKYADSAMYLAKRSGRN 215


>gi|209883884|ref|YP_002287741.1| ggdef domain [Oligotropha carboxidovorans OM5]
 gi|209872080|gb|ACI91876.1| ggdef domain [Oligotropha carboxidovorans OM5]
          Length = 763

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 8/163 (4%)

Query: 96  SYNRISQLSRIDCLSGLLNHS----AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +  RI  L+R D L+GL N +     F        +  +++F D+D FK++ND  GHP G
Sbjct: 329 TAERIEHLARYDALTGLPNRTHLEDEFERLTAQGMQSCALLFIDLDQFKKVNDTLGHPAG 388

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINI 210
           D ++  ++++L  +  T   V R GG+EF     +  S  EAA LA  + + +  S+I  
Sbjct: 389 DALLCQVANRLRRILNTTGIVARFGGDEFVVLLPIQHSRDEAAQLAGHIIRTL--SEIYD 446

Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252
            +G  I +  S G+            I+  AD A+Y AK  GR
Sbjct: 447 VNGHQIMVGASVGVGVMPEDGRTFEQILKCADMAMYHAKADGR 489


>gi|37680206|ref|NP_934815.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37198953|dbj|BAC94786.1| GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 515

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 77/154 (50%), Gaps = 13/154 (8%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+  LN  AF   L    EK    S++ FDID+FKQIND +GH  GD+V+  ++D   
Sbjct: 362 DPLTHTLNRRAFRHDLTQMLEKQAAFSLIGFDIDHFKQINDRYGHLGGDQVLIDVAD--- 418

Query: 164 VVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            V GT +  G    R GG+EF   +  +   E       +R+ IE +         IH T
Sbjct: 419 -VIGTVLQEGDRFYRFGGDEFGILSSVTERSELECYLEAIRERIEKTACYYQD-TEIHCT 476

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +S G A  C +E +  ++ + D  LY +K  GRN
Sbjct: 477 LSIGAAVHCDEE-LEDLVQKMDVQLYRSKDKGRN 509


>gi|307154420|ref|YP_003889804.1| PAS/PAC sensors-containing diguanylate cyclase [Cyanothece sp. PCC
           7822]
 gi|306984648|gb|ADN16529.1| diguanylate cyclase with PAS/PAC sensor [Cyanothece sp. PCC 7822]
          Length = 882

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/170 (32%), Positives = 87/170 (51%), Gaps = 11/170 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQINDNFGHPVGD 152
           +  L RID L+ + N   F          G   E+ LS++  D+DYFK+ ND +GHP GD
Sbjct: 713 LEHLIRIDPLTQVPNRRYFDEYFQQEWQRGIREEQPLSLILLDVDYFKRYNDYYGHPAGD 772

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           + +A ++  +      P   V R GGEEFA     ++ +   I+A  ++  ++   +   
Sbjct: 773 RCLAAVAQAVKQSLKRPADQVARYGGEEFAVILPHTALEGGMIMAKQIQDSLQQFSLPHK 832

Query: 212 SGP-SIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCF 258
             P S  +T+S GI+       +S+  +I +ADQALY AK+ GRNR   +
Sbjct: 833 RSPISNCVTVSLGISCIIPSSFMSSERLIIQADQALYQAKQQGRNRYAIY 882


>gi|293401601|ref|ZP_06645743.1| putative diguanylate cyclase (GGDEF) domain protein
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304859|gb|EFE46106.1| putative diguanylate cyclase (GGDEF) domain protein
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 634

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 15/182 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-----LGSYNEKLSIVFFDIDYF 139
           I     KELF+     S     D L+ L N +A  S      + + N+  +    DID F
Sbjct: 460 IDEEKRKELFMKKKMES-----DSLTSLYNKAATRSYIQQKLMENNNQYYAFYILDIDNF 514

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND +GH  GD+VI   ++ L   F     +GR+GG+EF A    +S+QEA   A  L
Sbjct: 515 KDINDAYGHAAGDEVIVTFANILKNQFTNDAIIGRIGGDEFVALQAVASKQEAQAKAEAL 574

Query: 200 RKIIENSQINISSGPSIH-ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
             I  +++     G   + I+ S G+A   H  +   ++ + AD+ALY AK++G+N+   
Sbjct: 575 VNIYHSAK---RQGLCHYAISTSIGVAVTIHNLDNFDSLYHNADKALYEAKENGKNQYRM 631

Query: 258 FS 259
           + 
Sbjct: 632 YE 633


>gi|229515598|ref|ZP_04405057.1| GGDEF family protein [Vibrio cholerae TMA 21]
 gi|229347367|gb|EEO12327.1| GGDEF family protein [Vibrio cholerae TMA 21]
          Length = 372

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 16/180 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L+    ++  LS  D L+GL N    +  L           +    V  DID FK +N
Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH VGDKV+  +++ L   F +   V RLGG+EF      ++      +A  +   I
Sbjct: 253 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETNTAGGVYIAEQVCCAI 312

Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   I++ +      ++S G+A      + H E    ++  ADQA+Y+AK SG+NRV  F
Sbjct: 313 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHE----LLRAADQAVYLAKNSGKNRVCAF 368


>gi|229159708|ref|ZP_04287718.1| Sensory box/GGDEF [Bacillus cereus R309803]
 gi|228623787|gb|EEK80603.1| Sensory box/GGDEF [Bacillus cereus R309803]
          Length = 569

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++      N +  +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNKMIVENIEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKKHTQDEMRQLATSVLSCFQAP- 253

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306


>gi|291295452|ref|YP_003506850.1| diguanylate cyclase and serine/threonine protein kinase with TPR
           repeats [Meiothermus ruber DSM 1279]
 gi|290470411|gb|ADD27830.1| diguanylate cyclase and serine/threonine protein kinase with TPR
           repeats [Meiothermus ruber DSM 1279]
          Length = 609

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 10/175 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           +L +L      + +L+R D L+ L N      +L         Y   +S+   DID+FKQ
Sbjct: 433 LLDKLRQQSAELERLARQDPLTRLNNRRYLEENLEREFAAAKRYKFPISVALVDIDHFKQ 492

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND F H VGD V+  +   L        F  R GGEEFA     +    A I    +R+
Sbjct: 493 INDTFSHQVGDDVLRIVGQILEASCRGVDFAARYGGEEFALVFPQTDLPGALIACERIRQ 552

Query: 202 IIENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            IE  Q N ++  P + +T+S G++          ++  AD+ LY AK++GRNRV
Sbjct: 553 RIE--QHNWAALHPDLKVTVSIGVSSDPSLPNHEKLLAAADEQLYAAKRAGRNRV 605


>gi|254522442|ref|ZP_05134497.1| ggdef domain protein [Stenotrophomonas sp. SKA14]
 gi|219720033|gb|EED38558.1| ggdef domain protein [Stenotrophomonas sp. SKA14]
          Length = 580

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 76/161 (47%), Gaps = 5/161 (3%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVI 155
           + QL+  D L+GLLN  A    +   + + +    ++  D+D FK IND  GH  GD+V+
Sbjct: 410 LRQLAGTDDLTGLLNRRALDQRVQQRHAEGAAAAVVILLDVDRFKSINDGHGHDAGDEVL 469

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L         + R GGEEF              LA  LR  ++   I +  G +
Sbjct: 470 VQVAQLLQRHLRRSDSIARYGGEEFLVLLADGDLDAGRRLAESLRLALQQLDIRVGGGTA 529

Query: 216 IHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
           + +T S G+AE         T++  AD A+Y AK  GR+RV
Sbjct: 530 LRVTASFGVAEGGTDALGWRTLLRAADAAMYQAKAQGRDRV 570


>gi|218458168|ref|ZP_03498259.1| hypothetical protein RetlK5_01397 [Rhizobium etli Kim 5]
          Length = 232

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 84/182 (46%), Gaps = 19/182 (10%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L +S  ++  L+  D L+G++N  AF        +     N   S++  DID FK  ND 
Sbjct: 44  LRLSAEQLRNLAETDGLTGIVNRRAFDEIFARETAGSARKNTPFSLLMVDIDRFKAYNDT 103

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GHP GD+ +  +S  L      P   V R GGEEF      +S + A I+A    + + 
Sbjct: 104 YGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFVVFLPDTSAKGAMIVAEQFARRLA 163

Query: 205 NSQINISSG-------PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              I + SG        SI I+ + G   R      + ++  AD ALY AK  GRNR++ 
Sbjct: 164 KENI-LHSGSEFGCVTASIGISCATGATLRASP---NRLLAEADTALYEAKTQGRNRILA 219

Query: 258 FS 259
            S
Sbjct: 220 HS 221


>gi|160943843|ref|ZP_02091074.1| hypothetical protein FAEPRAM212_01342 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445017|gb|EDP22020.1| hypothetical protein FAEPRAM212_01342 [Faecalibacterium prausnitzii
           M21/2]
          Length = 354

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 116/241 (48%), Gaps = 35/241 (14%)

Query: 30  YFSIFFSIFIATVIFI-------ANIF-----LFYIGLTPFYGLEYIL---VENLSLVII 74
           YF I+ +++ A ++++       A  F     +    LT F G E ++   +  L +  +
Sbjct: 119 YFYIYVAMYYAAMLYLMVATARTAAAFQNRSRMLIYPLTLFLGAETVIQLALPELHVTWL 178

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI-VF 133
            +T+  +L YI  S   E++         +++D L+GLLN +++++          + V 
Sbjct: 179 CVTLLSVLYYIYCS---EMW---------NQLDALTGLLNQNSYLNRTAEMRRSGGVLVV 226

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           FD+D FKQIND +GH  GD  +A ++D +   +    +  R+GG+EF    L   E+  A
Sbjct: 227 FDVDDFKQINDRYGHLQGDVCLAEIADCIKKAYARCGYCYRIGGDEF--CVLLKDEESEA 284

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             A  L+ ++   +   +  P++ +  +A        E +  +  RAD+ALY AKK  + 
Sbjct: 285 RCAKTLQALLAERRKVFAILPTVSLGSAAF-----SGEDVVAVKDRADRALYCAKKEQKA 339

Query: 254 R 254
           R
Sbjct: 340 R 340


>gi|260682639|ref|YP_003213924.1| putative signaling protein [Clostridium difficile CD196]
 gi|260686239|ref|YP_003217372.1| putative signaling protein [Clostridium difficile R20291]
 gi|260208802|emb|CBA61696.1| putative signaling protein [Clostridium difficile CD196]
 gi|260212255|emb|CBE02985.1| putative signaling protein [Clostridium difficile R20291]
          Length = 537

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 16/176 (9%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
            Y  +   +  D L+ + N   F        + + G   + L I+  D+D FK+INDNFG
Sbjct: 362 KYEELRTRAESDSLTNIYNKGTFEKLVEETIVMNTGDKKDALFII--DLDDFKEINDNFG 419

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206
           HP GD V+   +D++   FG    VGR+GG+EF        +E      A +L +++ ++
Sbjct: 420 HPFGDFVLKTFADKIQASFGNKDLVGRIGGDEFVVYMQDYVTEVNLHKKAKELNRVLSDN 479

Query: 207 QINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260
             ++S   S   ++S GIA R  ++  S   +   AD+ALY  K SG+N    F +
Sbjct: 480 YTDLSF--SFDSSVSIGIA-RYPQDGTSFFELFKNADRALYSIKASGKNSYCLFEE 532


>gi|144898224|emb|CAM75088.1| GGDEF family protein [Magnetospirillum gryphiswaldense MSR-1]
          Length = 353

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 80/176 (45%), Gaps = 26/176 (14%)

Query: 107 DCLSGLLNHSAFISSLGSY--------------------NEKLSIVFFDIDYFKQINDNF 146
           D L+GL N   F   +G                       E+  +   DID+FK++ND F
Sbjct: 165 DTLTGLKNRKTFDEKIGRIIAQSQTLAQIVPVERRQHEDGEQHWLGMLDIDHFKRVNDTF 224

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+V+   S  +  VF +   + R GGEEF      +S   A       R  +E  
Sbjct: 225 GHVFGDEVLLLFSALMRKVFRSDDLLFRFGGEEFVVVLAPTSALHAQQAFERFRTAVEG- 283

Query: 207 QINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                S P +  +T+S G     H +  S +I +AD+ALY AK++GRN+V  + D+
Sbjct: 284 ----FSFPQVGRVTVSIGFVAIKHGDIASAVIGQADEALYWAKRNGRNQVCLYEDL 335


>gi|78777681|ref|YP_393996.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78498221|gb|ABB44761.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM
           1251]
          Length = 615

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 8/169 (4%)

Query: 99  RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++   S  D ++GL N           +S      E  +++  D+D+FK +ND +GH VG
Sbjct: 437 KLRDTSLRDGMTGLYNRRFLEEIIDKIMSQANRNKETYAVLMLDVDFFKMVNDTYGHDVG 496

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DKVI  LS  L           R GGEEF      ++++    +AN +         ++ 
Sbjct: 497 DKVIVALSKILKNSIRESDLAIRYGGEEFLILLSNATDEGIMQVANKIHSNFAALSFDVG 556

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  ++  TIS GI++     + I   I  AD ALY AK +GRN++V F 
Sbjct: 557 TSETLKKTISIGISKFPTDGDTIWKCIKYADTALYEAKNTGRNKIVEFK 605


>gi|332767611|gb|EGJ97804.1| diguanylate cyclase domain protein [Shigella flexneri 2930-71]
          Length = 208

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 11/167 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPV 150
            ++   +  D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  
Sbjct: 45  EQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSK 104

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  L+  L         V R GGEEF      +    A  LA  +R  +  ++++I
Sbjct: 105 GDEVLCALARPLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSI 162

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S  P    T+S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 163 SGLPRF--TVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 207


>gi|260550228|ref|ZP_05824441.1| WspR [Acinetobacter sp. RUH2624]
 gi|260406756|gb|EEX00236.1| WspR [Acinetobacter sp. RUH2624]
          Length = 593

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 9/164 (5%)

Query: 99  RISQLSRIDCLSGLLNH---SAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152
           ++  ++  D L+G+ N    S ++  + SY +K S   ++  DID FK +ND +GH VGD
Sbjct: 430 QLKNIANTDPLTGVSNRLALSEYLKIVESYPQKFSQTCLMIIDIDRFKDVNDQYGHIVGD 489

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
           +VI  ++DQL         + R GG+EF          +A +LA  +R  I   +IN+S 
Sbjct: 490 QVIKRITDQLKANVRASDLIVRYGGDEFLILLEQVPFLDARLLAEKIRIAIALEEINLSG 549

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S   +H+++S G A          ++ +AD++L  AK  GRN V
Sbjct: 550 SNEKLHVSVSIGFA--IGATSWMELLEKADRSLLRAKARGRNVV 591


>gi|296139819|ref|YP_003647062.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Tsukamurella paurometabola DSM 20162]
 gi|296027953|gb|ADG78723.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Tsukamurella paurometabola DSM 20162]
          Length = 836

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 20/163 (12%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ LL  + F+       E+       L++++ D+D FK+IND+ GH VGD V+   +
Sbjct: 417 DDLTELLGRTTFVERATRVVEERRADGAELAVLWVDLDSFKRINDSLGHKVGDLVLRVAA 476

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN-DLRKIIENSQINIS-----SG 213
            +L+        VGRLGG+EF A           +L N D+    E  ++ ++      G
Sbjct: 477 QRLIAACAPDDLVGRLGGDEFIAL-------RPRVLPNDDVLAWTERVRLALARPMEVDG 529

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S+ +T S G+ E   ++ I  ++   D AL  AK+SGRNRVV
Sbjct: 530 ISLTVTCSIGLVESTAQDDIGQLLIDGDLALLHAKRSGRNRVV 572


>gi|167838567|ref|ZP_02465426.1| hypothetical protein Bpse38_18802 [Burkholderia thailandensis
           MSMB43]
          Length = 462

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 85/173 (49%), Gaps = 11/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           + LF ++  + + +  D L+ + N   F             ++  +++V  D+D+FKQ N
Sbjct: 275 RRLFDAHTSLVRTASHDALTMVYNRRYFNEQFEHAFHYARRHHLPIALVMVDVDHFKQYN 334

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD  +A ++  L  V      FV R GGEEFA    G+ E+ AA +A   R+ 
Sbjct: 335 DTFGHLQGDTCLAAVAAALSSVASRATDFVARYGGEEFAVVLPGTDERGAAAIAEQARQS 394

Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
           +E  +I   + P  ++T+SAG A       E    ++  AD  LY AK  GRN
Sbjct: 395 VERLRIAADTTPG-YVTVSAGYAASSGNPFETPGALVAAADAGLYRAKMLGRN 446


>gi|197118450|ref|YP_002138877.1| PAS domain-containing sensor diguanylate cyclase [Geobacter
           bemidjiensis Bem]
 gi|197087810|gb|ACH39081.1| sensor diguanylate cyclase, PAS domain-containing protein
           [Geobacter bemidjiensis Bem]
          Length = 300

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
           +  Y+    ++F D+D FK++ND++GH  GD+V++F++  L          GR GGEEF 
Sbjct: 165 MSRYDIPFGVLFMDLDDFKKVNDDYGHETGDRVLSFVAGTLSANSRPFDLYGRWGGEEFV 224

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                 +      +   LRK++E S + +     + +TIS G      ++ + +++ RAD
Sbjct: 225 GIVRNVTAANLKHMGQRLRKLVEKSFLLVGE-ERLRVTISIGATMALPEDTLQSLLQRAD 283

Query: 242 QALYVAKKSGRNRVV 256
             +Y +K +G+NR+ 
Sbjct: 284 LLMYQSKSAGKNRLT 298


>gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [Herminiimonas arsenicoxydans]
 gi|133739498|emb|CAL62549.1| Hypothetical protein, PAS and GGDEF domain [Herminiimonas
           arsenicoxydans]
          Length = 313

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 84/173 (48%), Gaps = 22/173 (12%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + QL   D L+G+ +   F   L +         E L ++F D+DYFK  ND +GH  GD
Sbjct: 143 LEQLVVHDTLTGIYSRKYFEDQLRTRWDQLIDTQESLVMMFIDVDYFKGFNDTYGHIAGD 202

Query: 153 ----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
               KV + L D L        FV R GGEEF   A   + ++A + A +L + + +  I
Sbjct: 203 DALRKVASILDDSLR---RDSEFVARFGGEEFIVLATEMTAEQAIMHAENLCRSVRDLDI 259

Query: 209 NISSGPSIHITISAGIAERCHKEPIS-----TIIYRADQALYVAKKSGRNRVV 256
             ++ P   +TIS G+      +P S      ++ +AD ALY AK  GRN+V 
Sbjct: 260 PHAASPHQFLTISCGV---VRMKPSSMAQPEVLLEQADSALYQAKARGRNQVA 309


>gi|15888624|ref|NP_354305.1| response regulator PleD [Agrobacterium tumefaciens str. C58]
 gi|15156350|gb|AAK87090.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 456

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 85/177 (48%), Gaps = 11/177 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           + L ++     +L+ +D L+GL N     S L             +SI   DID FK +N
Sbjct: 278 EHLRLNLQHTMELAIVDGLTGLNNRRYLDSHLKILFDRAAVRGRPISICMTDIDRFKLVN 337

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGD+V+   + ++           R GGEEF      +  + AA +A  LR I+
Sbjct: 338 DTYGHDVGDEVLREFAARIRSTVRGADLACRYGGEEFVVVMPDTPIELAASVAERLRAIV 397

Query: 204 ENSQINISS-GPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
           E+    + S    + IT S GIA        P   I+ +AD+ALY AK +GRNRVV 
Sbjct: 398 EDKPFYVRSIDRELSITASLGIATSSGAFGAP-DEILKQADKALYEAKHAGRNRVVA 453


>gi|88858304|ref|ZP_01132946.1| GGDEF family protein [Pseudoalteromonas tunicata D2]
 gi|88819921|gb|EAR29734.1| GGDEF family protein [Pseudoalteromonas tunicata D2]
          Length = 340

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 77/133 (57%), Gaps = 8/133 (6%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +   DID+FK+IND +GH  GD+V+  L+ ++   F     V R GGEEF      ++++
Sbjct: 197 LAMVDIDHFKKINDTYGHICGDEVLLLLAQRMSAFFRASDLVFRFGGEEFVIVFEPTTQE 256

Query: 191 EAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKE-PISTIIYRADQALYVAK 248
              ++   L   +E  QI  +  P I  +T+S GIA     + PIS +I  AD+ALY AK
Sbjct: 257 ---LINKRLAAFME--QIRSTHFPFIKQLTLSIGIARMSPYDFPIS-VIENADKALYFAK 310

Query: 249 KSGRNRVVCFSDI 261
            SGR++V+ +SD+
Sbjct: 311 NSGRDQVIFYSDV 323


>gi|315445609|ref|YP_004078488.1| diguanylate cyclase (GGDEF) domain-containing protein
           [Mycobacterium sp. Spyr1]
 gi|315263912|gb|ADU00654.1| diguanylate cyclase (GGDEF) domain-containing protein
           [Mycobacterium sp. Spyr1]
          Length = 299

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 85/170 (50%), Gaps = 11/170 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           ++ ++   L+  D L+GL N   F       +         ++++  D+D FK+ ND FG
Sbjct: 127 LAEDQAQHLAMHDPLTGLANRRYFNRILHREVRRSRRNGSPITVIAIDVDNFKKYNDEFG 186

Query: 148 HPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  GD  +  LS  L+     P     R+GG+EFA     S   +A  +A  + K  E +
Sbjct: 187 HLAGDHCLQELSTVLLGAARRPSDLAARIGGDEFAVLCGDSDAADAQAIAESIVK--EFA 244

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
            + I  G S  +T+SAG+A    + E    ++  AD+ALY AK++GRNRV
Sbjct: 245 DLRIGFGASEPVTVSAGVATMIPRDEDEKWLVNEADKALYNAKRAGRNRV 294


>gi|296102185|ref|YP_003612331.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056644|gb|ADF61382.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 704

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 105/203 (51%), Gaps = 23/203 (11%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQL-SRIDCLSGLLNH--------- 115
           V  L L+ + + ISL+  +   + L +   + NR  +L +R D L+GL N          
Sbjct: 213 VTTLCLLGMMLIISLIDSHWRTNRLTDNLQALNRQLELQARFDALTGLANRHQMDLRMQD 272

Query: 116 ---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
              SA +S     N++ +++F D+D+FKQ+ND +GH VGD+++  ++ ++       M +
Sbjct: 273 CLRSALLS-----NKQFAVIFLDVDHFKQVNDTWGHNVGDELLITIAQRITARLTREMTL 327

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHK- 230
            RLGG+ F    L   E +   L + L  ++++ +  +S  G ++  T+SAG++      
Sbjct: 328 ARLGGDAF---ILLVPECDDDKLQSLLSTLLDDVRRPLSVCGHTLSTTLSAGVSRYPQDG 384

Query: 231 EPISTIIYRADQALYVAKKSGRN 253
           E +  +  +AD A+   KK G+N
Sbjct: 385 ETLHELKLKADAAMQYVKKQGQN 407


>gi|218780814|ref|YP_002432132.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762198|gb|ACL04664.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 593

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 95/203 (46%), Gaps = 12/203 (5%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF--- 118
           +YI         +S TI+  L      + KE  ++  +I  +S  D L+GL N   F   
Sbjct: 391 DYISKSRADAATLSRTIATALE--KARLRKETRLAQEKIVDMSITDELTGLSNRRYFNEV 448

Query: 119 ----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
               +    +    L++   D+D+FK +ND +GH  GDKV+A     L   F +   + R
Sbjct: 449 VDIEVQKARNNGSPLTLCMMDLDHFKNVNDTYGHLTGDKVLAETGALLKQGFRSHDMIFR 508

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
            GGEEFA     +  + A       R+ ++   ++ +    + ITIS GIA    ++ + 
Sbjct: 509 YGGEEFAVILPDTDLEHAKRACERFRESVQEHVMD-AKVKQVKITISIGIANMPGEQIME 567

Query: 235 T--IIYRADQALYVAKKSGRNRV 255
              +I  AD ALY AK+ GRNRV
Sbjct: 568 AGELIDAADHALYRAKELGRNRV 590


>gi|83591897|ref|YP_425649.1| diguanylate cyclase/phosphodiesterase [Rhodospirillum rubrum ATCC
           11170]
 gi|83574811|gb|ABC21362.1| diguanylate cyclase/phosphodiesterase [Rhodospirillum rubrum ATCC
           11170]
          Length = 683

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 14/169 (8%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F       ++S    N++L+++F D+D+FK +ND+ GH  GD+++  ++
Sbjct: 263 DTLTGLPNRVLFQDRLLTALASARRRNDQLAVLFVDLDHFKTVNDSLGHSFGDQLLQQVA 322

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIE--NSQINISSGPSI 216
            +L         + R+GG+EF  A  G   Q + A++AN   +I+E       +  G  +
Sbjct: 323 TRLSQCLRDSDTLARMGGDEFTIALTGDGHQRDYAMIAN---RILETLRRPFTLEGGHEV 379

Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            I  S GI       E + T++  AD A+Y AK SGRN    F++  N 
Sbjct: 380 LIGSSIGITLFPNDAEDVDTLLRNADTAMYRAKASGRNAFQFFTEEMNR 428


>gi|17989005|ref|NP_541638.1| response regulator PleD [Brucella melitensis bv. 1 str. 16M]
 gi|23500354|ref|NP_699794.1| response regulator PleD [Brucella suis 1330]
 gi|161620672|ref|YP_001594558.1| response regulator PleD [Brucella canis ATCC 23365]
 gi|163844762|ref|YP_001622417.1| response regulator PleD [Brucella suis ATCC 23445]
 gi|225686396|ref|YP_002734368.1| response regulator PleD [Brucella melitensis ATCC 23457]
 gi|254699847|ref|ZP_05161675.1| response regulator PleD [Brucella suis bv. 5 str. 513]
 gi|254702985|ref|ZP_05164813.1| response regulator PleD [Brucella suis bv. 3 str. 686]
 gi|256015387|ref|YP_003105396.1| response regulator/GGDEF domain protein [Brucella microti CCM 4915]
 gi|256043507|ref|ZP_05446434.1| response regulator PleD [Brucella melitensis bv. 1 str. Rev.1]
 gi|256262463|ref|ZP_05464995.1| GGDEF:Response regulator receiver [Brucella melitensis bv. 2 str.
           63/9]
 gi|260564702|ref|ZP_05835187.1| GGDEF domain-containing protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260568102|ref|ZP_05838571.1| GGDEF domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|261750320|ref|ZP_05994029.1| response regulator receiver modulated diguanylate cyclase [Brucella
           suis bv. 5 str. 513]
 gi|261753594|ref|ZP_05997303.1| response regulator receiver modulated diguanylate cyclase [Brucella
           suis bv. 3 str. 686]
 gi|265989925|ref|ZP_06102482.1| response regulator receiver modulated diguanylate cyclase [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|294853592|ref|ZP_06794264.1| two-component system response regulator [Brucella sp. NVSL 07-0026]
 gi|17984843|gb|AAL53902.1| response regulator protein [Brucella melitensis bv. 1 str. 16M]
 gi|23463971|gb|AAN33799.1| response regulator/GGDEF domain protein [Brucella suis 1330]
 gi|161337483|gb|ABX63787.1| diguanylate cyclase (GGDEF) domain [Brucella canis ATCC 23365]
 gi|163675485|gb|ABY39595.1| diguanylate cyclase (GGDEF) domain [Brucella suis ATCC 23445]
 gi|225642501|gb|ACO02414.1| GGDEF domain protein [Brucella melitensis ATCC 23457]
 gi|255998047|gb|ACU49734.1| response regulator/GGDEF domain protein [Brucella microti CCM 4915]
 gi|260152345|gb|EEW87438.1| GGDEF domain-containing protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260154767|gb|EEW89848.1| GGDEF domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|261740073|gb|EEY27999.1| response regulator receiver modulated diguanylate cyclase [Brucella
           suis bv. 5 str. 513]
 gi|261743347|gb|EEY31273.1| response regulator receiver modulated diguanylate cyclase [Brucella
           suis bv. 3 str. 686]
 gi|263000594|gb|EEZ13284.1| response regulator receiver modulated diguanylate cyclase [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263092199|gb|EEZ16496.1| GGDEF:Response regulator receiver [Brucella melitensis bv. 2 str.
           63/9]
 gi|294819247|gb|EFG36247.1| two-component system response regulator [Brucella sp. NVSL 07-0026]
 gi|326410768|gb|ADZ67832.1| response regulator PleD [Brucella melitensis M28]
 gi|326554060|gb|ADZ88699.1| response regulator PleD [Brucella melitensis M5-90]
          Length = 461

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 9/170 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S  R    S  D L+GL N           ++      + LSI+  D+D+FKQ+N+ +GH
Sbjct: 288 SMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQYGH 347

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+   S +L         + R GGEEF      +  Q A  +A  +R I+  +  
Sbjct: 348 GAGDHVLREFSGRLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRGIVAEAPF 407

Query: 209 NISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  G     +T+S G+A  R   + +  +  RA  AL  AK+SGRNR+V
Sbjct: 408 VLDDGKRRASLTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIV 457


>gi|330005063|ref|ZP_08305090.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
 gi|328536440|gb|EGF62792.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
          Length = 510

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 21/175 (12%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           K+  +SY R +    ID L+G  N  AF   I++L + ++  ++   DID FK IND +G
Sbjct: 346 KQRELSYVRQAT---IDALTGCKNRRAFDSDIAALMNDHQPFALALVDIDNFKSINDTWG 402

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVG--RLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           H  GD V+  ++ + + V   P+ +   R GGEEFA           A   ++ R ++E 
Sbjct: 403 HLNGDIVLRNVAREGLQVL-QPLEISLYRYGGEEFAVVF-------PAEHIDNARTLLET 454

Query: 206 SQINISSG----PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            ++N+         + +T SAG+ E  + EP+  ++   D+ALY AK+ G+NR++
Sbjct: 455 WRVNVERRTWREDGLTVTFSAGLGE-WNMEPLDKLVVSVDEALYKAKQQGKNRIL 508


>gi|269964099|ref|ZP_06178401.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831158|gb|EEZ85315.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 594

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 15/163 (9%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            +L   D ++ L N +   + +    ++E   I   DID FK IND FGHPVGD VI   
Sbjct: 433 DRLRHQDPMTQLENKACLAAKVSRELHSENRFIAMVDIDNFKYINDKFGHPVGDLVIQKT 492

Query: 159 SDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
           ++ +   F  P  + + R GGEEFA     + E +A    ++    ++ S + +  G  +
Sbjct: 493 AEVMRDCFPKPKGICLARYGGEEFAIVFQANDEFDAKHQLDNFLTALQRSHLTLGCG-DV 551

Query: 217 HITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNRV 255
             T S G        P+ T    ++ +AD+ALY AK+ G+NRV
Sbjct: 552 RFTASVGFT------PLETSYHHVVEQADKALYQAKRLGKNRV 588


>gi|253996340|ref|YP_003048404.1| PAS/PAC/GAF sensor-containing diguanylate cyclase [Methylotenera
           mobilis JLW8]
 gi|253983019|gb|ACT47877.1| diguanylate cyclase with PAS/PAC and GAF sensors [Methylotenera
           mobilis JLW8]
          Length = 737

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 13/175 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148
            +    Q +  D L+ L N    +S L         +   ++++F D+D+FK IND+ GH
Sbjct: 566 QHEEAEQFAYHDPLTNLPNRRMLLSRLHHALMQTERFYRAMALMFLDLDHFKNINDSLGH 625

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD ++  ++++L+    +   V R GG+EF       S  E A L    +KII + + 
Sbjct: 626 DVGDMLLKEVANRLLKCVRSIDTVSRHGGDEFVIVLSEISHTEDAELV--AQKIIASFKE 683

Query: 209 NIS-SGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSD 260
            I  +G  I ++ S GIA   H++P     ++  AD+A+Y AK +GRNR  CF D
Sbjct: 684 PILINGHEIMMSTSIGIAVSKHEKPTKADELMKHADKAMYEAKGAGRNR-YCFHD 737


>gi|288573467|ref|ZP_06391824.1| response regulator receiver modulated diguanylate cyclase
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569208|gb|EFC90765.1| response regulator receiver modulated diguanylate cyclase
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 293

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 67/118 (56%), Gaps = 1/118 (0%)

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK+IND +GH  GD+V+  ++  L         VGR GGEEF     G+S +E   + +
Sbjct: 175 HFKRINDTYGHLAGDRVLRSIAKILCRELRPYDVVGRYGGEEFVMILPGASSEEGYRILD 234

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +RK I +  + +     + +T+S G+AE      +  +I RAD+A+Y AK +GR++V
Sbjct: 235 RVRKRIGDRPLKVDD-DQVELTVSMGLAEYRQGMTMDGLIARADEAMYRAKDAGRDKV 291


>gi|158521752|ref|YP_001529622.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3]
 gi|158510578|gb|ABW67545.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3]
          Length = 374

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
           ++  +  +L R D L+GL N   F             Y   +S++  DID+FK+ ND++G
Sbjct: 195 MTLQQTRELIRKDELTGLYNRRYFFERFEREVYRSRRYGRTISLMMIDIDHFKEYNDSYG 254

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+V+  +S            V R GGEEF      +S + A  +A  LR+ +E   
Sbjct: 255 HLRGDRVLKTISRIFESSLRKIDVVARYGGEEFLVLLPETSRENAIRVAEKLRQAVEKVD 314

Query: 208 INISS---GP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            N  +   GP ++ ITI          EPI  +   AD+ALY+ K  GRN+V
Sbjct: 315 FNEDAPNLGPCALTITIGVSAIPDDANEPILALDL-ADKALYMGKAQGRNQV 365


>gi|119897858|ref|YP_933071.1| GGDEF/EAL-domain-containing protein [Azoarcus sp. BH72]
 gi|119670271|emb|CAL94184.1| GGDEF/EAL-domain containing protein [Azoarcus sp. BH72]
          Length = 1090

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 13/169 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  L+  D L+GL N SA+++   S       +   L+++F D+D FK +ND+ GHPVGD
Sbjct: 659 IQYLAHYDSLTGLPNRSAWMNQARSALSLAQRHQHILAVLFLDLDNFKTVNDSLGHPVGD 718

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINI 210
           +++A ++ +L           RLGG+EF A    +  +E  AA+    L  +     I+ 
Sbjct: 719 RLLAAVAQRLAHCLREEDSFARLGGDEFVALLPRVTRAEDAAAVARKMLDALATPVVIDD 778

Query: 211 SS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
               PS+ I IS   ++      + T++  AD A+Y AK+ GRN    F
Sbjct: 779 HELAPSVSIGISLFPSD---GTDVDTLLKHADTAMYGAKEVGRNNFQFF 824


>gi|186470454|ref|YP_001861772.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phymatum STM815]
 gi|184196763|gb|ACC74726.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phymatum STM815]
          Length = 1061

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
           S  RI  L+  D L+ L N + F   LG          ++++++F D+D FK IND+ GH
Sbjct: 621 SEARIEFLAEHDVLTELPNRALFTKRLGVVLDNAKHAQQRVAVLFIDLDRFKDINDSLGH 680

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENS 206
            +GD ++  +S +LV    +   V RLGG+EF    A  GS+   A  +   L  ++   
Sbjct: 681 HIGDGLLRSVSRRLVQAVRSGDTVSRLGGDEFTMVLADAGSAADVARTIDERLLPLVR-- 738

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +   G ++ +  S G+A        I T++  AD A+Y AK +GRN V  FS
Sbjct: 739 EPHAIGGVTLQVACSVGVALYPDDGADIETLMQNADAAMYQAKAAGRNLVKFFS 792


>gi|332757681|gb|EGJ88012.1| hypothetical protein SF434370_1707 [Shigella flexneri 4343-70]
 gi|332760194|gb|EGJ90490.1| hypothetical protein SFK671_1708 [Shigella flexneri K-671]
 gi|333004453|gb|EGK23983.1| hypothetical protein SFVA6_2205 [Shigella flexneri VA-6]
 gi|333004777|gb|EGK24299.1| hypothetical protein SFK218_2143 [Shigella flexneri K-218]
 gi|333018579|gb|EGK37873.1| hypothetical protein SFK304_1898 [Shigella flexneri K-304]
          Length = 230

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 11/167 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPV 150
            ++   +  D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  
Sbjct: 67  EQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSK 126

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  L+  L         V R GGEEF      +    A  LA  +R  +  ++++I
Sbjct: 127 GDEVLCALARPLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSI 184

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S  P    T+S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 185 SGLPRF--TVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 229


>gi|311696343|gb|ADP99216.1| diguanylate cyclase [marine bacterium HP15]
          Length = 939

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 63/208 (30%), Positives = 102/208 (49%), Gaps = 16/208 (7%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSA 117
           ++Y L+  LS  I +I I+ LL Y +  + +   +L  +   +++LS  D L+ L N S 
Sbjct: 728 VDYTLIWQLS--IAAIVIAFLLVYWNRKLNRLNHDLTEANETLAKLSVTDDLTKLGNRSY 785

Query: 118 FISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           F             ++   ++   D D+FK+INDN+GH  GD  +  L++ +   F    
Sbjct: 786 FDQEFRKSFQWCQRHHSGFAVAMVDADHFKRINDNYGHEAGDICLQTLAELMRKHFRRET 845

Query: 171 -FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC- 228
             + R GGEEF   A      E        RK +E S  ++     +H+TIS G+A    
Sbjct: 846 DRLSRFGGEEFVIFASYEDNSEIRNRLESFRKHVEKS-CSVCGEHDVHLTISIGLATGIP 904

Query: 229 -HKEPISTIIYRADQALYVAKKSGRNRV 255
              +  +  + +ADQALY AK++GRNR+
Sbjct: 905 GPDDSPAEFLRQADQALYQAKQNGRNRL 932


>gi|209550978|ref|YP_002282895.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536734|gb|ACI56669.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 736

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 105/209 (50%), Gaps = 22/209 (10%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA------ 117
           ++++ L LV +   + L++G+ +G  LK      N   + +  D LSGL N         
Sbjct: 265 MVLQALGLVGLFFAVLLVIGWFAGRRLK---ADENSAREETLRDRLSGLSNRDGLGLAVD 321

Query: 118 -FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
            F+         + +++ D+D FK++ND++GH  GD++I  ++  L V+      + R+G
Sbjct: 322 RFVVEARQTKRNVLLLYLDLDGFKEVNDSYGHGTGDQLIRGVAAGLDVLIPQGAVLARIG 381

Query: 177 GEEFAAAALGSSEQEAAI-LAND----LRKIIENSQINISSGPSIHITIS-AGIAERCHK 230
           G+EFA A L   E  AA+ LA      L + +E  +  +  G SI I +S AG   R   
Sbjct: 382 GDEFAIAFLSDGENAAALQLAEQILDFLVEPLEIGRRVVVVGASIGIAMSPAGTIGR--- 438

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFS 259
                ++ R+D A+Y AK++GR R+  + 
Sbjct: 439 ---EELVRRSDLAMYKAKEAGRARMTLYD 464


>gi|153000761|ref|YP_001366442.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica OS185]
 gi|151365379|gb|ABS08379.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica OS185]
          Length = 546

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 13/167 (7%)

Query: 107 DCLSGLLNHSA-FISSLGSYN------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLNH+   +++   YN       ++ I  FD+D+FK++ND +GH  GDKV+   +
Sbjct: 384 DSLTGLLNHTQILVAARRCYNVARRINSQVCIAMFDLDHFKKVNDTYGHAGGDKVLLAFA 443

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L        F GR GGEEF        +  A    N +R+   +  + +  G    +T
Sbjct: 444 HLLQQSLRQTDFTGRYGGEEFMLVLPDMQKPLAIAKLNAIRESFSHI-VFVEDGIEFKVT 502

Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +S G+  ++ C  E     +  AD+ LY AK+ GRN++V FS  E +
Sbjct: 503 LSGGLVFSDEC--EEFQDCLLLADKHLYEAKRLGRNQLV-FSPSEQD 546


>gi|158321179|ref|YP_001513686.1| diguanylate cyclase with GAF sensor [Alkaliphilus oremlandii
           OhILAs]
 gi|158141378|gb|ABW19690.1| diguanylate cyclase with GAF sensor [Alkaliphilus oremlandii
           OhILAs]
          Length = 517

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 19/163 (11%)

Query: 104 SRIDCLSGLLNHSAF------ISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S+ D L+GLLN  AF      I  +  Y+E K SI+  DID FK  ND +GH +GDKV+ 
Sbjct: 360 SKYDGLTGLLNRRAFESIYEEIYKIYRYSEDKFSILMIDIDNFKSTNDQYGHQMGDKVLK 419

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++  +     +   + R GGEE         ++    +A  +R  IEN  ++      I
Sbjct: 420 NVAKCVCENVRSKDVIARYGGEEIIVILKDIGKERGKDIAERIRLSIENLSVD-----GI 474

Query: 217 HITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +T+S GIA    +  +K+    +IY AD+ LY AK  G+N+V
Sbjct: 475 KVTVSIGIATFGVDSYNKD---NLIYLADKCLYEAKSIGKNQV 514


>gi|113971049|ref|YP_734842.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|114048274|ref|YP_738824.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113885733|gb|ABI39785.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113889716|gb|ABI43767.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 518

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 77/163 (47%), Gaps = 8/163 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +L+ +D L+ L N +A    +         +   L I   DID+FK IND+FGH  GDK
Sbjct: 354 QKLNLLDSLTQLPNRAALEERMELEYRNYQRHKTPLWIAVADIDHFKSINDSFGHSTGDK 413

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  ++  L        FV R GGEEF          + A L N +R+ ++N      + 
Sbjct: 414 TLQVIAMALKNSLRDTEFVARYGGEEFVLILPDIGGGDIAQLLNRVREKVKNIPFKFKN- 472

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I +T+S G A+    E I     RAD ALY AK   R+RVV
Sbjct: 473 QRITVTVSIGAAQVMGNELIHETFERADAALYKAKHESRDRVV 515


>gi|152968367|ref|YP_001364151.1| diguanylate cyclase with PAS/PAC sensor [Kineococcus radiotolerans
           SRS30216]
 gi|151362884|gb|ABS05887.1| diguanylate cyclase with PAS/PAC sensor [Kineococcus radiotolerans
           SRS30216]
          Length = 524

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 76/158 (48%), Gaps = 12/158 (7%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F+  L           + LS+V  D+D FK IND  GH VGD V+  ++
Sbjct: 368 DPLTGLRNRRRFVDDLAQRLAATAAAGQPLSLVLLDVDRFKGINDTHGHAVGDDVLVGVA 427

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            Q +     P  V R GGEEF           A   A  LR      ++ +    ++ IT
Sbjct: 428 -QALSTHARPEDVVRYGGEEFVVLLPHLDADAARARAEVLRAACGQVRVEVE---AVRIT 483

Query: 220 ISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
           +SAG+A    H      ++  AD+ALY AK+ GR++VV
Sbjct: 484 VSAGVATSPDHGSTPDELLLAADRALYEAKEGGRDQVV 521


>gi|330896018|gb|EGH28241.1| GGDEF domain-containing protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330936872|gb|EGH41013.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str.
           1704B]
 gi|330975437|gb|EGH75503.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 334

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L   D L+GL N   F   L            +LS++  D+DYFK  NDNFGH  GD
Sbjct: 165 LQRLMNSDGLTGLSNRRHFDEYLELEWRRAIREQSQLSMLMIDVDYFKPYNDNFGHLEGD 224

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  ++  +      P     R GGEEFA     +S   A +LA  LR+ +    I +I
Sbjct: 225 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVAGMNIPHI 284

Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257
           +  P   +T+S G+A    +  + +  +I  AD+ LY AK +GRN+V  
Sbjct: 285 APVPGSSLTVSIGVATMTPQVGMQSRQLILDADKGLYQAKNNGRNQVAA 333


>gi|268679056|ref|YP_003303487.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617087|gb|ACZ11452.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 392

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 86/172 (50%), Gaps = 18/172 (10%)

Query: 113 LNHSAFISSLGS-YN-------EKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +N SAFI  L + YN       EKL       I   DIDYFK+IND +GH  GDK++  +
Sbjct: 217 INQSAFIDKLTNVYNRNYLQKYEKLINLNEYIIAALDIDYFKKINDTYGHDAGDKILTQI 276

Query: 159 SDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLR--KIIENSQINISSGPS 215
           +  L+        V R GGEEF   A +      AA  A   R    I+ ++  IS   S
Sbjct: 277 AHILLQTIREGDSVIRYGGEEFLILAKVDKKSNYAASFAVIERVFHAIQTAEFFISDTKS 336

Query: 216 IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           I +++S G+    H+ +       +AD ALY AK SGRN + C+++ ++ + 
Sbjct: 337 ISVSVSIGVNLLAHQAQNFQEAFKQADIALYTAKNSGRNCIKCYTNADDTST 388


>gi|227821826|ref|YP_002825796.1| putative transmembrane sensory box GGDEF/EAL family protein
           [Sinorhizobium fredii NGR234]
 gi|227340825|gb|ACP25043.1| putative transmembrane sensory box GGDEF/EAL family protein
           [Sinorhizobium fredii NGR234]
          Length = 709

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 92/176 (52%), Gaps = 19/176 (10%)

Query: 98  NRISQLSRI----DCLSGLLNHSAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +R+++ +R     D LSGLLN    +     S  + +  LS+   D+D FK +ND +GH 
Sbjct: 283 HRLAETARFQANHDSLSGLLNRHGLLDFLERSEPTASSMLSLYLVDLDGFKAVNDAWGHA 342

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS---EQEAAILANDLRKIIENS 206
           VGD +I  ++  L       +   RLGG+EFA   +G++   E E AILA     ++E  
Sbjct: 343 VGDALIRLVAKALPACHPEIVAAARLGGDEFALVQVGTAPHGEIERAILA----LLVEPF 398

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +I+     +I +  S G A R        ++ RAD ALY AK++G+ + V + D+E
Sbjct: 399 KIDDR---TIEVGASIGAAVRADSLASLELLRRADMALYRAKENGKGQAVQY-DLE 450


>gi|167897696|ref|ZP_02485098.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 7894]
          Length = 688

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 71/127 (55%), Gaps = 4/127 (3%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186
           KL+I+F D+D FK IN + GHP GD+V+   S +L+        V RLGG+EF       
Sbjct: 288 KLAILFMDLDGFKTINGSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESV 347

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245
           SS+ EAA +A ++ + +   + N   G ++ +T S GIA      +   T++  AD A+Y
Sbjct: 348 SSDDEAARVARNVLERMRKGRWN--DGQALQVTPSIGIALYPKDGDTADTLLRHADAAMY 405

Query: 246 VAKKSGR 252
            AK+ GR
Sbjct: 406 AAKRGGR 412


>gi|158336630|ref|YP_001517804.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158306871|gb|ABW28488.1| diguanylate cyclase (GGDEF) domain protein [Acaryochloris marina
           MBIC11017]
          Length = 433

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 81/172 (47%), Gaps = 11/172 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+ +D L+ L N   F   L             LS++  D+DYFK  ND +GHP GD
Sbjct: 261 LERLAMVDELTQLANRRQFDQRLEQAWKVARRQQHPLSLILCDVDYFKNYNDTYGHPAGD 320

Query: 153 KVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  ++  L      P  F  R GGEEFA      S  +A  +   ++  I   QI + 
Sbjct: 321 ECLRSIAKVLDRSIRRPGEFSARYGGEEFAIVLPNVSRMDAIQIVTTIQTAIHQLQIPHR 380

Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260
           SS     +T+S GIA        S   +I  AD+ALY AK  GR+R V + +
Sbjct: 381 SSLNHASVTLSLGIATMIPNANYSPEQLIQAADEALYQAKHQGRDRYVVWDN 432


>gi|149378320|ref|ZP_01896028.1| hypothetical protein MDG893_17212 [Marinobacter algicola DG893]
 gi|149357402|gb|EDM45916.1| hypothetical protein MDG893_17212 [Marinobacter algicola DG893]
          Length = 331

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 82/179 (45%), Gaps = 37/179 (20%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  L+ ID L+G+ N  +        ++S        ++V  DIDYFK+IND +GH V
Sbjct: 160 ERLEHLATIDPLTGVKNRRSMDQELAMAVASASRTGISYALVLLDIDYFKKINDEYGHNV 219

Query: 151 GDKVIAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           GD V+  +          SDQL           R GGEEF     G       + +  LR
Sbjct: 220 GDDVLVDMVALIEQNIRKSDQLF----------RFGGEEFVLLMPG-------VDSTGLR 262

Query: 201 KIIENSQINISS---GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            ++ N Q  +      P   +T S G+A     E     + RAD+ALY AK +GR+R+V
Sbjct: 263 AVMHNLQHIMHKFLRHPGGQVTASFGVALLQAGEKPDDWLARADEALYEAKDTGRDRIV 321


>gi|194365079|ref|YP_002027689.1| two component regulator propeller domain-containing protein
            [Stenotrophomonas maltophilia R551-3]
 gi|194347883|gb|ACF51006.1| two component regulator propeller domain protein [Stenotrophomonas
            maltophilia R551-3]
          Length = 1008

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 9/159 (5%)

Query: 104  SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
            +R D L+GL N  AF  +L             L +V  DID+FK +ND   H +GD V+ 
Sbjct: 847  AREDALTGLANRRAFDETLARDFARSQRSGHPLCLVVLDIDHFKDVNDRHSHSIGDAVLV 906

Query: 157  FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             ++  +           R GGEEFA     +  +EAA L   LR +  +   + +    +
Sbjct: 907  QVATVIAAACRDSDLPARTGGEEFALLLNDTRLEEAAQLCARLRGLFHDHP-DWAGVDGL 965

Query: 217  HITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNR 254
             +T SAG+ E    +    ++Y RAD+ALY AK  GR+R
Sbjct: 966  RVTFSAGLVELDADDRTPALLYQRADRALYRAKSDGRDR 1004


>gi|28875454|gb|AAO59943.1| putative sensor kinase [uncultured bacterium]
          Length = 237

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 7/160 (4%)

Query: 107 DCLSGLLNHSAFISSLGS------YNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      +L +      +N+  +S +  DID+FK +ND FGH  GD VI  ++
Sbjct: 73  DPLTGLRNRHHLEDTLRTQMGQAIHNQTPISCLMMDIDHFKDVNDRFGHEAGDGVIKGVA 132

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +           R GGEEF     G  E+EA  +A D+   +    +   +    HI 
Sbjct: 133 AIIQRAIRDSGMAFRYGGEEFLVLLSGMGEEEANRMATDIYNGVHALTLRFGTSDISHID 192

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +S G+A          ++  AD ALY AK+ GR+R+V F 
Sbjct: 193 VSIGVASYPQHAQSDNLLRAADVALYRAKELGRSRIVSFG 232


>gi|325926525|ref|ZP_08187842.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
           protein [Xanthomonas perforans 91-118]
 gi|325543097|gb|EGD14543.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
           protein [Xanthomonas perforans 91-118]
          Length = 801

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 9/165 (5%)

Query: 104 SRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D ++GL+N           I    S     ++ F D+D+FK +ND FGH VGDK + 
Sbjct: 370 ARHDAMTGLINRHEIERRLLRLIELPQSPQMCHALCFVDLDHFKLVNDTFGHAVGDKFLC 429

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             +D + +   +  ++GRLGG+EFA     +   +A  +   +  ++     +   G  +
Sbjct: 430 HFADVITMQLRSGDWLGRLGGDEFAILLANTDLAQAQAVLERMHGVLGQPWSH-QGGRPL 488

Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + S G+ E  H    ++T++  AD A + AK+ GRNRV CF++
Sbjct: 489 TPSCSFGVVEIRHGVSDLTTLMTAADLACHAAKEEGRNRVRCFNE 533


>gi|258445792|ref|ZP_05693969.1| GGDEF domain-containing protein [Staphylococcus aureus A6300]
 gi|257855368|gb|EEV78306.1| GGDEF domain-containing protein [Staphylococcus aureus A6300]
          Length = 356

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 9/168 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
           NR     + D L+GL N   F   L   + K       ++++  DID FK +ND + H  
Sbjct: 182 NRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHKS 241

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  +S  L         + R GGEEF+      S  ++  LA ++R  +E S  ++
Sbjct: 242 GDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFHL 301

Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
            +   I +++S G+      +P S   +   AD  ++VAK  GRN+V+
Sbjct: 302 PNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVM 349


>gi|251810180|ref|ZP_04824653.1| ABC superfamily ATP binding cassette transporter, binding protein
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|293368208|ref|ZP_06614837.1| ABC superfamily ATP binding cassette transporter, binding protein
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|251806232|gb|EES58889.1| ABC superfamily ATP binding cassette transporter, binding protein
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|291317631|gb|EFE58048.1| ABC superfamily ATP binding cassette transporter, binding protein
           [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 365

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 14/205 (6%)

Query: 63  YILVENLSLVIIS--ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           Y LVE L L+ IS  ITI+  + ++    +   F   NR     + D L+GL N   F  
Sbjct: 157 YELVEILVLIPISFIITIASAITFVD---IWHFFSLVNRYENEDKYDYLTGLGNVKEFDR 213

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L   + K       L+++  DID FK +ND++ H  GD V+  +S  L         + 
Sbjct: 214 HLNEVSSKAEEKKQSLALLLIDIDGFKDVNDHYSHQSGDAVLKQMSQLLKNYVPNQFKIF 273

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEF+      +  ++  LA ++R  +E S  ++ +   I +++S G+     ++  
Sbjct: 274 RNGGEEFSVVIRDYTLDQSVKLAENIRSGVEKSSFHLPNKEVIKLSVSIGVGYLTQEDRK 333

Query: 234 S--TIIYRADQALYVAKKSGRNRVV 256
           S   +   AD  ++VAK  GRN+V+
Sbjct: 334 SQRKVFKDADDMVHVAKSEGRNKVM 358


>gi|78048529|ref|YP_364704.1| putative signal transduction protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036959|emb|CAJ24659.1| putative signal transduction protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 801

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 9/165 (5%)

Query: 104 SRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D ++GL+N           I    S     ++ F D+D+FK +ND FGH VGDK + 
Sbjct: 370 ARHDAMTGLINRHEIERRLLRLIELPQSPQMCHALCFVDLDHFKLVNDTFGHAVGDKFLC 429

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             +D + +   +  ++GRLGG+EFA     +   +A  +   +  ++     +   G  +
Sbjct: 430 HFADVITMQLRSGDWLGRLGGDEFAILLANTDLAQAQAVLERMHGVLGQPWSH-QGGRPL 488

Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + S G+ E  H    ++T++  AD A + AK+ GRNRV CF++
Sbjct: 489 TPSCSFGVVEIRHGVSDLTTLMTAADLACHAAKEEGRNRVRCFNE 533


>gi|77362379|ref|YP_341953.1| hypothetical protein PSHAb0470 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76877290|emb|CAI89507.1| conserved protein of unknown function ; putative GGDEF domain
           protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 511

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 75/160 (46%), Gaps = 14/160 (8%)

Query: 106 IDCLSGLLNHSAFISSLGSYNEKL----------SIVFFDIDYFKQINDNFGHPVGDKVI 155
           +D L+ L N +AF      YN ++          ++V  D+DYFK IND FGH  GD  +
Sbjct: 352 LDSLTKLPNRAAFDER---YNHEMHLFNVQASDVTLVVIDVDYFKSINDRFGHTAGDITL 408

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L        F+ R GGEEF     G+S + A      L+K I+           
Sbjct: 409 QVIAKALQKSIEKTDFIARYGGEEFVLLMPGTSLEHAIPQLEKLKKNIKKIPFKFKD-KQ 467

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           I IT+S G  +    + +     RAD ALY AK +GR+R+
Sbjct: 468 IEITVSLGATQFKQGDTLLKAFDRADDALYEAKNAGRDRL 507


>gi|332308008|ref|YP_004435859.1| response regulator receiver modulated diguanylate cyclase
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175337|gb|AEE24591.1| response regulator receiver modulated diguanylate cyclase
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 357

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 84/169 (49%), Gaps = 11/169 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPV 150
           + + +++  D L+ + N   F   L   N+        L ++ FDID+FK  ND +GH  
Sbjct: 188 DELRKMAYQDGLTQVSNRRYFNEYLARQNKLKQRSGLPLGLMMFDIDFFKSFNDLYGHLA 247

Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAIL-ANDLRKIIENSQI 208
           GD  +  ++  L      P  FV R GGEEF A  L  ++ E  IL A  ++  +E  +I
Sbjct: 248 GDDCLRLVAKALSASVVRPGDFVARFGGEEF-AIVLPDTDIEGVILVAQKVQAQVEALEI 306

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
           N    P   ++ S GIA    K P    +I RAD+ LY AK +GRN+ V
Sbjct: 307 NHEGSPLGRVSGSIGIAVSDGKAPEQGKLIERADKHLYQAKATGRNKFV 355


>gi|282916088|ref|ZP_06323851.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           D139]
 gi|283769909|ref|ZP_06342801.1| diguanylate cyclase GGDEF domain-containing protein [Staphylococcus
           aureus subsp. aureus H19]
 gi|282320036|gb|EFB50383.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           D139]
 gi|283460056|gb|EFC07146.1| diguanylate cyclase GGDEF domain-containing protein [Staphylococcus
           aureus subsp. aureus H19]
          Length = 356

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 9/168 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
           NR     + D L+GL N   F   L   + K       ++++  DID FK +ND + H  
Sbjct: 182 NRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHKS 241

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  +S  L         + R GGEEF+      S  ++  LA ++R  +E S  ++
Sbjct: 242 GDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFHL 301

Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
            +   I +++S G+      +P S   +   AD  ++VAK  GRN+V+
Sbjct: 302 PNKEVIKLSVSIGVGYLTDNDPKSQRKVFKDADDMVHVAKNQGRNKVM 349


>gi|254711121|ref|ZP_05172932.1| response regulator PleD [Brucella pinnipedialis B2/94]
 gi|256029502|ref|ZP_05443116.1| response regulator PleD [Brucella pinnipedialis M292/94/1]
 gi|261318712|ref|ZP_05957909.1| response regulator receiver modulated diguanylate cyclase [Brucella
           pinnipedialis B2/94]
 gi|265986510|ref|ZP_06099067.1| response regulator receiver modulated diguanylate cyclase [Brucella
           pinnipedialis M292/94/1]
 gi|261297935|gb|EEY01432.1| response regulator receiver modulated diguanylate cyclase [Brucella
           pinnipedialis B2/94]
 gi|264658707|gb|EEZ28968.1| response regulator receiver modulated diguanylate cyclase [Brucella
           pinnipedialis M292/94/1]
          Length = 462

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 9/170 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S  R    S  D L+GL N           ++      + LSI+  D+D+FKQ+N+ +GH
Sbjct: 289 SMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQYGH 348

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+   S +L         + R GGEEF      +  Q A  +A  +R I+  +  
Sbjct: 349 GAGDHVLREFSGRLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRGIVAEAPF 408

Query: 209 NISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  G     +T+S G+A  R   + +  +  RA  AL  AK+SGRNR+V
Sbjct: 409 VLDDGKRRASLTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIV 458


>gi|218709674|ref|YP_002417295.1| hypothetical protein VS_1685 [Vibrio splendidus LGP32]
 gi|218322693|emb|CAV18869.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Vibrio
           splendidus LGP32]
          Length = 356

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 8/165 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           Y+ ++ L    CL   LN  A +  L     K ++   DID+FKQ+ND +GH +GD V+ 
Sbjct: 184 YDPLTHLPNRRCLFKTLN--AEVEQLKGSLGKGTLAVVDIDFFKQVNDTYGHQMGDVVLK 241

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILANDLRKIIENSQ-INIS 211
            +++ L        FV R GGEEF      S+    E +   L  +++KI  +S+ I IS
Sbjct: 242 KVANVLRNNIQDGEFVARFGGEEFILWYPNSTPSCVEDKFMTLLQEMKKITLDSKPITIS 301

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G + H  +S G ++      + ++I  AD+ LY+AK++GR++ +
Sbjct: 302 IG-ACHFELSTGDSKGERMSALDSLIKVADECLYIAKQNGRDQFI 345


>gi|124515987|gb|EAY57496.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptospirillum rubarum]
          Length = 878

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 91/184 (49%), Gaps = 15/184 (8%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LS 130
           + LLL  ++  + +E      +I +L+ ID L+GLLN +A I  L +  EK       ++
Sbjct: 429 VVLLLKDVTAKMERE-----RQIWRLANIDDLTGLLNRTALIERLANEMEKSRRNRGAMA 483

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           + F D D FK IND  GH  GD  +  +  +L         V RLGG+EF       S++
Sbjct: 484 LFFLDFDDFKGINDTLGHSAGDFFLKVIGHRLSGSVRPTDIVARLGGDEFVIVVALESDE 543

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKK 249
                A  +  I+  + ++I +  ++  ++S GIA      E +  ++ +AD A+Y AK 
Sbjct: 544 SILAFAQKILDIL-GAPVSIQA-QTVQTSVSVGIATFPRDAESVEDLLRKADIAMYQAKN 601

Query: 250 SGRN 253
            G+N
Sbjct: 602 KGKN 605


>gi|158520752|ref|YP_001528622.1| diguanylate cyclase with GAF sensor [Desulfococcus oleovorans Hxd3]
 gi|158509578|gb|ABW66545.1| diguanylate cyclase with GAF sensor [Desulfococcus oleovorans Hxd3]
          Length = 347

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 100/206 (48%), Gaps = 26/206 (12%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G++  L+E L+       +SL L  ++         ++ ++  L+  D L+GLLN     
Sbjct: 153 GMDTSLLEQLA-----TKVSLCLSNVA---------AHEKLKFLAYHDPLTGLLNRRVME 198

Query: 120 SSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           ++L       G YN  LS+VF D+DYFK++ND  GH  GD ++  L+DQLV        V
Sbjct: 199 TALARETARAGRYNLPLSVVFLDLDYFKKVNDTHGHETGDALLKHLADQLVHQCRGTDIV 258

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC---- 228
            R  G+EF      +    A  L + +++ +  S +     P I + I+ G+A       
Sbjct: 259 ARFAGDEFVIILPETDADHATALMHRIQEHLAASPLVCGETP-IPVVITFGVASTMDPDP 317

Query: 229 HKEPISTIIYRADQALYVAKKSGRNR 254
            K+  + ++ +AD+ LY  K + +N+
Sbjct: 318 PKDDPAALLKKADERLYEKKAARQNK 343


>gi|70728811|ref|YP_258560.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5]
 gi|68343110|gb|AAY90716.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5]
          Length = 495

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 9/190 (4%)

Query: 74  ISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAF-ISSLGSYNE---- 127
           +++ I L++  I   +L  +   Y R I   + +D L+ L N   F + +  +  E    
Sbjct: 297 LNLLICLVITAIVLVLLSAVVRRYQRKIEAQATLDSLTRLPNRRGFDLLAAQALQEAWRD 356

Query: 128 --KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              L  V  D+D+FK++ND +GH  GD+V++  +  L         V R GGEEF     
Sbjct: 357 LTPLCAVLLDLDHFKRLNDTYGHLAGDQVLSGFARDLQGCLRQSDIVCRWGGEEFIVLLK 416

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            +    A  +A  +R + E  + +    P + +T+S G+     ++ + +++ RAD A+Y
Sbjct: 417 DTDSSVALGIAEKIRLLTEQQRYHYEGQP-LQLTVSIGLTSLQAQDTLHSLLSRADHAMY 475

Query: 246 VAKKSGRNRV 255
            AK +GRNR 
Sbjct: 476 RAKHTGRNRT 485


>gi|27467446|ref|NP_764083.1| hypothetical protein SE0528 [Staphylococcus epidermidis ATCC 12228]
 gi|81843994|sp|Q8CTF5|Y528_STAES RecName: Full=Uncharacterized membrane protein SE_0528
 gi|147742898|sp|Q5HQY3|Y413_STAEQ RecName: Full=Uncharacterized membrane protein SERP0413
 gi|27314989|gb|AAO04125.1|AE016745_224 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
          Length = 356

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 14/205 (6%)

Query: 63  YILVENLSLVIIS--ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           Y LVE L L+ IS  ITI+  + ++    +   F   NR     + D L+GL N   F  
Sbjct: 148 YELVEILVLIPISFIITIASAITFVD---IWHFFSLVNRYENEDKYDYLTGLGNVKEFDR 204

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L   + K       L+++  DID FK +ND++ H  GD V+  +S  L         + 
Sbjct: 205 HLNEVSSKAEEKKQSLALLLIDIDGFKDVNDHYSHQSGDAVLKQMSQLLKNYVPNQFKIF 264

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEF+      +  ++  LA ++R  +E S  ++ +   I +++S G+     ++  
Sbjct: 265 RNGGEEFSVVIRDYTLDQSVKLAENIRSGVEKSSFHLPNKEVIKLSVSIGVGYLTQEDRK 324

Query: 234 S--TIIYRADQALYVAKKSGRNRVV 256
           S   +   AD  ++VAK  GRN+V+
Sbjct: 325 SQRKVFKDADDMVHVAKSEGRNKVM 349


>gi|62317533|ref|YP_223386.1| response regulator PleD [Brucella abortus bv. 1 str. 9-941]
 gi|83269514|ref|YP_418805.1| response regulator PleD [Brucella melitensis biovar Abortus 2308]
 gi|148558083|ref|YP_001257597.1| response regulator PleD [Brucella ovis ATCC 25840]
 gi|189022788|ref|YP_001932529.1| response regulator PleD [Brucella abortus S19]
 gi|237817081|ref|ZP_04596073.1| diguanylate cyclase (GGDEF) domain-containing protein [Brucella
           abortus str. 2308 A]
 gi|254691030|ref|ZP_05154284.1| response regulator PleD [Brucella abortus bv. 6 str. 870]
 gi|254695663|ref|ZP_05157491.1| response regulator PleD [Brucella abortus bv. 3 str. Tulya]
 gi|254698814|ref|ZP_05160642.1| response regulator PleD [Brucella abortus bv. 2 str. 86/8/59]
 gi|254732261|ref|ZP_05190839.1| response regulator PleD [Brucella abortus bv. 4 str. 292]
 gi|256111466|ref|ZP_05452486.1| response regulator PleD [Brucella melitensis bv. 3 str. Ether]
 gi|256256215|ref|ZP_05461751.1| response regulator PleD [Brucella abortus bv. 9 str. C68]
 gi|260544769|ref|ZP_05820590.1| GGDEF:Response regulator receiver [Brucella abortus NCTC 8038]
 gi|260756626|ref|ZP_05868974.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 6 str. 870]
 gi|260760056|ref|ZP_05872404.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 4 str. 292]
 gi|260763295|ref|ZP_05875627.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260882443|ref|ZP_05894057.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 9 str. C68]
 gi|261216063|ref|ZP_05930344.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 3 str. Tulya]
 gi|265992970|ref|ZP_06105527.1| response regulator receiver modulated diguanylate cyclase [Brucella
           melitensis bv. 3 str. Ether]
 gi|297249572|ref|ZP_06933273.1| two-component system protein [Brucella abortus bv. 5 str. B3196]
 gi|62197726|gb|AAX76025.1| response regulator/GGDEF domain protein [Brucella abortus bv. 1
           str. 9-941]
 gi|82939788|emb|CAJ12796.1| GGDEF:Response regulator receiver [Brucella melitensis biovar
           Abortus 2308]
 gi|148369368|gb|ABQ62240.1| response regulator/GGDEF domain protein [Brucella ovis ATCC 25840]
 gi|189021362|gb|ACD74083.1| GGDEF:Response regulator receiver [Brucella abortus S19]
 gi|237787894|gb|EEP62110.1| diguanylate cyclase (GGDEF) domain-containing protein [Brucella
           abortus str. 2308 A]
 gi|260098040|gb|EEW81914.1| GGDEF:Response regulator receiver [Brucella abortus NCTC 8038]
 gi|260670374|gb|EEX57314.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 4 str. 292]
 gi|260673716|gb|EEX60537.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260676734|gb|EEX63555.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 6 str. 870]
 gi|260871971|gb|EEX79040.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 9 str. C68]
 gi|260917670|gb|EEX84531.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 3 str. Tulya]
 gi|262763840|gb|EEZ09872.1| response regulator receiver modulated diguanylate cyclase [Brucella
           melitensis bv. 3 str. Ether]
 gi|297173441|gb|EFH32805.1| two-component system protein [Brucella abortus bv. 5 str. B3196]
          Length = 456

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 9/170 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S  R    S  D L+GL N           ++      + LSI+  D+D+FKQ+N+ +GH
Sbjct: 283 SMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQYGH 342

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+   S +L         + R GGEEF      +  Q A  +A  +R I+  +  
Sbjct: 343 GAGDHVLREFSGRLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRGIVAEAPF 402

Query: 209 NISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  G     +T+S G+A  R   + +  +  RA  AL  AK+SGRNR+V
Sbjct: 403 VLDDGKRRASLTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIV 452


>gi|330962247|gb|EGH62507.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 406

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 92/206 (44%), Gaps = 39/206 (18%)

Query: 87  GSILKELFISYNRISQ-----LSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFF 134
           GS L  LF    R+ Q     ++R D L+ L N        ++F          ++I+  
Sbjct: 212 GSRLSYLFALRGRLLQAQLVEMARTDALTQLFNRRYQDEVITSFWQRARETPTNVAIILM 271

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           DID+FK  ND++GHP GD  +  LSD   Q     G   F  R GGEE        + Q 
Sbjct: 272 DIDHFKSYNDSYGHPQGDTCLKLLSDVIRQQAGECGAMAF--RFGGEEILILMNADARQA 329

Query: 192 AAILANDLRKIIENSQINISS--------GPSIHITISAGIAERCHKEPIS---TIIYRA 240
                   RK+ E  Q ++++        G    +TIS G+A  C   P +   ++I  A
Sbjct: 330 --------RKMAEALQASVAALKLPHPVLGEGALVTISLGVA--CAIAPKTSPESLISAA 379

Query: 241 DQALYVAKKSGRNRVVCFSDIENNTC 266
           D ALY AK++GRN   CF+  +   C
Sbjct: 380 DNALYAAKRAGRN-CACFARNDAFEC 404


>gi|256157697|ref|ZP_05455615.1| response regulator PleD [Brucella ceti M490/95/1]
 gi|256253331|ref|ZP_05458867.1| response regulator PleD [Brucella ceti B1/94]
 gi|261220447|ref|ZP_05934728.1| response regulator receiver modulated diguanylate cyclase [Brucella
           ceti B1/94]
 gi|265996202|ref|ZP_06108759.1| response regulator receiver modulated diguanylate cyclase [Brucella
           ceti M490/95/1]
 gi|260919031|gb|EEX85684.1| response regulator receiver modulated diguanylate cyclase [Brucella
           ceti B1/94]
 gi|262550499|gb|EEZ06660.1| response regulator receiver modulated diguanylate cyclase [Brucella
           ceti M490/95/1]
          Length = 462

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 9/170 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S  R    S  D L+GL N           ++      + LSI+  D+D+FKQ+N+ +GH
Sbjct: 289 SMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQYGH 348

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+   S +L         + R GGEEF      +  Q A  +A  +R I+  +  
Sbjct: 349 GAGDHVLREFSGRLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRGIVAEAPF 408

Query: 209 NISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  G     +T+S G+A  R   + +  +  RA  AL  AK+SGRNR+V
Sbjct: 409 VLDDGKRRASLTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIV 458


>gi|254820134|ref|ZP_05225135.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Mycobacterium intracellulare ATCC 13950]
          Length = 1288

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 21/187 (11%)

Query: 82  LGYISGSILKELFI----SYNRISQLSR---IDCLSGLLNHSAFISSLGSYNEK------ 128
           LG +  ++L   F+    + N +S+++R    D L+GL N + F+  L     +      
Sbjct: 284 LGILVAAVLARQFVVLVDNQNLLSEVAREAFRDNLTGLANRALFLQRLEQAVARRHPNGM 343

Query: 129 -LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA---AA 184
            ++++  D+D FK +ND  GHP GD+++  ++ +L    G    + RLGG+EFAA   A+
Sbjct: 344 PIAVLCLDLDNFKSVNDALGHPAGDELLVRVAGRLTAALGESGTIARLGGDEFAAVIEAS 403

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
           +  S+  A  + +     I    I I   PSI  T+  G A  C    +  ++  AD A+
Sbjct: 404 VQESQAAAHRILDAFTGAILIDGIPIMVRPSIGFTVCTG-ASAC---TVDQLLRHADLAM 459

Query: 245 YVAKKSG 251
           Y AK+ G
Sbjct: 460 YAAKREG 466


>gi|229171410|ref|ZP_04298995.1| Sensory box/GGDEF [Bacillus cereus MM3]
 gi|228612114|gb|EEK69351.1| Sensory box/GGDEF [Bacillus cereus MM3]
          Length = 569

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNEMIAGKKEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF        + E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHKQDEMRQLATSVLSCFQAP- 253

Query: 208 INISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  G  ++I+ S G+ A     + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 254 -FMLEGHEVYISASLGLCAYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306


>gi|170700998|ref|ZP_02891979.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
 gi|170134095|gb|EDT02442.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
          Length = 520

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 96/208 (46%), Gaps = 17/208 (8%)

Query: 68  NLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           + ++ I S    L LG++  S+L     ++   +   +  L+R D L+GL N      +L
Sbjct: 303 DRAIPIGSAMAVLALGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRMLDVTL 362

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGR 174
                +       LS++F D+D+FK+ ND+ GH  GD  +A ++  +      P  +  R
Sbjct: 363 AREWRRAARSQHALSLLFVDVDHFKRYNDSQGHQAGDDALAAVARCIAGCLRRPADYAAR 422

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--- 231
            GGEEF           A  +A  +R  I +  I   +G    +T S G+   C+ E   
Sbjct: 423 YGGEEFVVVLPNVDTNGAVTIAESIRTGILDLGIRHDTGVCGRLTASIGVTT-CYPERDD 481

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
            I   +  AD ALY AK+ GRN+VV  +
Sbjct: 482 SIQAALKLADDALYRAKECGRNQVVVLT 509


>gi|110801973|ref|YP_698358.1| GGDEF domain-containing protein [Clostridium perfringens SM101]
 gi|110682474|gb|ABG85844.1| GGDEF domain protein [Clostridium perfringens SM101]
          Length = 544

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 5/167 (2%)

Query: 99  RISQLSRI-DCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           R S+L  + D L  + N     ++I++L   +  +S +  D+DYFK  NDN+GH  GD V
Sbjct: 371 RDSKLDSLKDGLCNIYNRRFLDSYINNLKEKDLPISFLMIDVDYFKLYNDNYGHQAGDFV 430

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213
           +  +S  L         V R GGEEF     G+S+  +   A  +++ ++N  I    S 
Sbjct: 431 LKSISSVLKRNSRKEDIVSRYGGEEFCVLLKGASKHSSINYAKRIKENLDNLNIKHKYSK 490

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            S ++T S GI     K  +   I  +D+ALY++K  GRN      D
Sbjct: 491 ISNNVTFSIGIYTTYTKNDLKNAIKLSDKALYISKTRGRNTYTYLED 537


>gi|148263943|ref|YP_001230649.1| diguanylate cyclase [Geobacter uraniireducens Rf4]
 gi|146397443|gb|ABQ26076.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter uraniireducens Rf4]
          Length = 462

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 12/178 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           S+  E  + YN    L  ID L+GL N+          I     Y   +S++F DID FK
Sbjct: 279 SLALENAVRYNNAKNLLYIDELTGLFNYRYLDVALEREIRRAERYGSHISVIFLDIDLFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH VG + +  +   L         V R GG+E+    + +    AA +A  +R
Sbjct: 339 RVNDMYGHLVGSRALNEVGILLKKSVRDVDTVIRYGGDEYTIILIETGIDGAAAVAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255
           + IE      + G ++ +T S G A  C+ E   T   ++  ADQA+Y  K  G+NRV
Sbjct: 399 RSIEAHGFMAADGLNLKLTASLGYA--CYPEDAKTKTELLELADQAMYRGKADGKNRV 454


>gi|330950876|gb|EGH51136.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 748

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 83/151 (54%), Gaps = 15/151 (9%)

Query: 116 SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
           +AF++    Y E+ +++F D+D FK +ND+ GH  GDK++  ++++L     +   + R+
Sbjct: 337 TAFVTRDSRY-ERATVLFLDLDGFKVVNDSMGHLAGDKLLKAVANRLQTCVRSNDVLARI 395

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINIS---SGPSIHITISAGI--AERC 228
           GG+EFA   +G  + E A+      K+ E   SQ++ +    G  I I+ S GI  A   
Sbjct: 396 GGDEFAILLMGKDQPETAV------KMAERIVSQLHTAIQIEGQDIFISCSIGIVTAGES 449

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           H +P   ++  AD A+Y AKK GR R   F+
Sbjct: 450 HTKP-EELLRDADVAMYSAKKQGRGRWNIFN 479


>gi|329926642|ref|ZP_08281055.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
 gi|328939183|gb|EGG35546.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
          Length = 529

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 6/179 (3%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDY 138
           L +I G+  + +      + Q +  D L+GL N       L S++   E  +++  DID+
Sbjct: 349 LNWIMGAAAETMAKQTQSLQQEAITDPLTGLSNRRELERCLESWDALGEPYAVILLDIDH 408

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND +GH  GD+++  ++  +V          R GGEEF       S   A  +A  
Sbjct: 409 FKAINDTYGHQTGDQILKLVAAVMVDCAPADAVCSRFGGEEFVILLRERSLDTAYRMAER 468

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +R+ I  S    S   ++ I +S       ++E    +   AD ALY AK  GRNR V 
Sbjct: 469 IRRAILVSPTPYSGTLTVSIGVSLYPEHGGNRE---DVFQAADMALYRAKGEGRNRTVA 524


>gi|330466192|ref|YP_004403935.1| diguanylate cyclase/phosphodiesterase [Verrucosispora maris
           AB-18-032]
 gi|328809163|gb|AEB43335.1| diguanylate cyclase/phosphodiesterase [Verrucosispora maris
           AB-18-032]
          Length = 792

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 96/198 (48%), Gaps = 27/198 (13%)

Query: 89  ILKELFISYN--RIS----QLSRIDCLSGLLNHSAFISSL-------------GSYNEKL 129
           +L  LF  Y   R++    QL+ +D L+GL N  A ++ +             G  +  L
Sbjct: 223 VLVPLFAVYRMARLTVEQRQLAALDPLTGLPNRKALLAEVNEQVHRHAERAARGEPDAHL 282

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  D+D FK +ND  GH VGD+++  +S +L  V   P  V RLGG+EFA    G +E
Sbjct: 283 ALLLIDLDRFKNVNDALGHAVGDRLLVEVSARLTGVVEPPDLVARLGGDEFAIVMTGLTE 342

Query: 190 --QEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYV 246
             Q  A     +R + E   ++   G  + +  S GIA    H E  +T++  AD A+Y 
Sbjct: 343 VGQARAFADQVVRVLAEPVPLD---GLPLDVGGSIGIALYPDHGEDFATLMRHADVAMYD 399

Query: 247 AKKSGRNRVVCFSDIENN 264
           AK   RN  V     E++
Sbjct: 400 AKH--RNDTVAVYTAESD 415


>gi|258423395|ref|ZP_05686286.1| diguanylate cyclase GGDEF domain-containing protein [Staphylococcus
           aureus A9635]
 gi|257846456|gb|EEV70479.1| diguanylate cyclase GGDEF domain-containing protein [Staphylococcus
           aureus A9635]
          Length = 356

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 9/168 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
           NR     + D L+GL N   F   L   + K       ++++  DID FK +ND + H  
Sbjct: 182 NRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHKS 241

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  +S  L         + R GGEEF+      S  ++  LA ++R  +E S  ++
Sbjct: 242 GDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFHL 301

Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
            +   I +++S G+      +P S   +   AD  ++VAK  GRN+V+
Sbjct: 302 PNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVM 349


>gi|229101383|ref|ZP_04232127.1| Sensory box/GGDEF [Bacillus cereus Rock3-28]
 gi|228682088|gb|EEL36221.1| Sensory box/GGDEF [Bacillus cereus Rock3-28]
          Length = 569

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  I++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIAGKKEFGIIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTNEHTQDEMRQLATSVLSCFQAP- 253

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306


>gi|153833487|ref|ZP_01986154.1| diguanylate cyclase (GGDEF) domain [Vibrio harveyi HY01]
 gi|148870262|gb|EDL69197.1| diguanylate cyclase (GGDEF) domain [Vibrio harveyi HY01]
          Length = 573

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 15/163 (9%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            +L   D ++ L N +   + +    ++E   I   DID FK IND FGHPVGD VI   
Sbjct: 412 DRLRHQDPMTQLENKACLAAKVSRELHSENRFIAMVDIDNFKYINDKFGHPVGDLVIQKT 471

Query: 159 SDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
           ++ +   F  P  + + R GGEEFA     + E +A    ++    ++ S + +  G  +
Sbjct: 472 AEVMRDCFPKPKGICLARYGGEEFAIVFQANDEFDAKHQLDNFLTALQRSHLTLGCG-DV 530

Query: 217 HITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNRV 255
             T S G        P+ T    ++ +AD+ALY AK+ G+NRV
Sbjct: 531 RFTASVGFT------PLETSYHHVVEQADKALYQAKRLGKNRV 567


>gi|313650578|gb|EFS14981.1| uncharacterized ydaM domain protein [Shigella flexneri 2a str.
           2457T]
          Length = 221

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 11/167 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPV 150
            ++   +  D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  
Sbjct: 58  EQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSK 117

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  L+  L         V R GGEEF      +    A  LA  +R  +  ++++I
Sbjct: 118 GDEVLCALARPLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSI 175

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S  P    T+S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 176 SGLPRF--TVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 220


>gi|255320380|ref|ZP_05361564.1| ggdef domain protein [Acinetobacter radioresistens SK82]
 gi|255302575|gb|EET81808.1| ggdef domain protein [Acinetobacter radioresistens SK82]
          Length = 423

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 10/172 (5%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNF 146
           +I  + +  LS+ D L+ + N   F  +L S+  +       LS++F D+D+FK  ND +
Sbjct: 241 YIHASELLHLSQHDELTQISNRRNFDETLDSFYRQSRKEGTPLSLLFIDVDFFKNYNDFY 300

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH +GDKVI  ++  +        FV R GGEEF      +    A  +A+++ + IE  
Sbjct: 301 GHQMGDKVIYSIARAIKNSIRHRDFVARYGGEEFVVLLPETEAHGAYAVASNIYREIERL 360

Query: 207 QI-NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
            I +  S  + +IT+S GI     +  ++   ++  ADQALY AK+ GRN++
Sbjct: 361 AIPHERSCIASYITVSLGITIYRGEAAVTQEALLESADQALYRAKQLGRNQI 412


>gi|226313740|ref|YP_002773634.1| hypothetical protein BBR47_41530 [Brevibacillus brevis NBRC 100599]
 gi|226096688|dbj|BAH45130.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 746

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 14/167 (8%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDK 153
           +N + ++   D L+GL         +    EK    S++  DIDYFK +ND FGH VGD+
Sbjct: 585 HNEMERMVITDNLTGLYTRRHLNERVRGSLEKDNYGSLILIDIDYFKTVNDTFGHQVGDE 644

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  +S+ +           R GGEE A       +  A  +A  +R+ +E         
Sbjct: 645 VLIQVSNLIRHSIRDSDIAARWGGEELAVYLPRVDKNTAHSVAERIRECVEQET------ 698

Query: 214 PSIHITISAGIAERCHKEPIS----TIIYRADQALYVAKKSGRNRVV 256
            S  +TIS G+A+   +  ++     + ++AD ALY AK SGRN+VV
Sbjct: 699 -SPQVTISCGLAKWSREMDVNLSVEALFHQADIALYEAKNSGRNQVV 744


>gi|254456940|ref|ZP_05070368.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207085732|gb|EDZ63016.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 591

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 113/253 (44%), Gaps = 31/253 (12%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISIT------------ISLLLGYIS 86
           + + IF  +  L+ +  T +    Y +   L+LV+  +T             S +  YI+
Sbjct: 338 VDSSIFKNSCELYKLEATEYICTPYTISNELTLVLTIVTRDEKTTEYVRSITSDIEDYIT 397

Query: 87  GS----ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--------EKLSIVFF 134
            +    I K+L  + N+   ++R+D L+ + N   F+      +            ++  
Sbjct: 398 TARPAIISKKLMQTLNK---MARVDQLTDMYNRK-FLDEFADVSIPQAVRAGTSYGVLMV 453

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DIDYFK INDN+GH VGD+ I  +S  +           R GGEEF              
Sbjct: 454 DIDYFKMINDNYGHDVGDEAIRIISGVIKKSIRKADIAIRYGGEEFLVLLYNCEANNIVQ 513

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
           +AN +R      +I  ++G S   T+S G +      E I   I  AD +LY AK+ GRN
Sbjct: 514 IANSIRTEFSKQKI-YANGESFSKTLSVGCSSFPKDSESIWKCIKFADISLYQAKEGGRN 572

Query: 254 RVVCFS-DIENNT 265
           +VV F+ D+ NNT
Sbjct: 573 QVVAFNEDMLNNT 585


>gi|99081010|ref|YP_613164.1| diguanylate cyclase with GAF sensor [Ruegeria sp. TM1040]
 gi|99037290|gb|ABF63902.1| diguanylate cyclase with GAF sensor [Ruegeria sp. TM1040]
          Length = 596

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 74/161 (45%), Gaps = 5/161 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGD 152
            R+SQL   D L+GLLN  +   + G + +       + +  DID+FK+IND FGH  GD
Sbjct: 424 TRLSQLVEHDPLTGLLNRRSLDVAFGDFVQNPPTLPTACLMIDIDHFKRINDEFGHEAGD 483

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+   +  L  V G      R GGEEF           A  +A  +R       I    
Sbjct: 484 TVMQSFAGLLREVVGDSGSCYRFGGEEFVVILPDHDVDAAHEIAEGIRTRTAKMAIAHRG 543

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
                +TIS G+A       + T++ RAD AL  AK +GRN
Sbjct: 544 QSLGKVTISIGLAVAASAGTLDTLLSRADSALLQAKVTGRN 584


>gi|296284755|ref|ZP_06862753.1| hypothetical protein CbatJ_14093 [Citromicrobium bathyomarinum
           JL354]
          Length = 560

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 85/180 (47%), Gaps = 18/180 (10%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           +  +   LS+ID L+G LN           ++++G        V  D+D FK+IND  GH
Sbjct: 89  AEEQARHLSQIDPLTGCLNRRCATEKMMNALAAIGDTQYAAGFVMIDLDGFKEINDTNGH 148

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENS 206
             GD+V+  +S +L  +        RLGG+EFA     +        + A ++   I   
Sbjct: 149 QAGDEVLLEVSRRLKSMTPPGGDCARLGGDEFAFIMPLVKDDPDSLELWACEMTGNIARP 208

Query: 207 QINISSGPSIHITISAGIAERCHKEPIST-------IIYRADQALYVAKKSGRNRVVCFS 259
            I+   G S+ +TIS GIA    +EPI         ++ RAD A+Y AKK GRNR   F 
Sbjct: 209 -IDTEVG-SLEVTISVGIAVHRPEEPIENLETAARKLMRRADLAMYQAKKEGRNRFCWFD 266


>gi|160900354|ref|YP_001565936.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Delftia acidovorans SPH-1]
 gi|160365938|gb|ABX37551.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Delftia acidovorans SPH-1]
          Length = 617

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 16/170 (9%)

Query: 95  ISYNRISQLSRIDCLSGLLNH------SAFISSLGSYNE-KLSIVFFDIDYFKQINDNFG 147
           +   RI  ++  D L+GL N       SA    L   N+  L+++F D+D+FK +ND+ G
Sbjct: 183 LDQERIYWMAHYDALTGLPNRTLLAERSARAIELAKANDTPLAVMFLDLDHFKHVNDSLG 242

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS- 206
           H VGD ++  ++ +L  V      V R+GG+EF     G++ Q AA +A  L++    + 
Sbjct: 243 HRVGDALLVEIARRLRAVVRDRDTVARIGGDEFVLLLPGANAQGAARVAGKLQEASRQAY 302

Query: 207 QIN---ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           QI+   ++  PSI I +        H   I ++   AD A+Y AK++GRN
Sbjct: 303 QIDRHELTIAPSIGIAL---YPRDGHD--IDSLTQAADAAMYHAKQAGRN 347


>gi|293414303|ref|ZP_06656952.1| inner membrane protein ycdT [Escherichia coli B185]
 gi|291434361|gb|EFF07334.1| inner membrane protein ycdT [Escherichia coli B185]
          Length = 476

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHP+GD+VI  + + 
Sbjct: 309 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMLMDIDHFKKVNDTWGHPIGDQVIKTVVNI 368

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +           R+GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 369 IGKSIRPDDLFARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 428

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 429 SIGAVVTQGNALNPNEIYRLADNALYEAKETGRNKVV 465


>gi|270290006|ref|ZP_06196232.1| signal transduction diguanylate cyclase [Pediococcus acidilactici
           7_4]
 gi|270281543|gb|EFA27375.1| signal transduction diguanylate cyclase [Pediococcus acidilactici
           7_4]
          Length = 396

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 13/214 (6%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF- 118
           G+  + V  + L+     + + + +     ++ +   Y ++ + +  D L+G+ N   F 
Sbjct: 180 GIRTMTVSQVLLLTFEFMMMMTIVHFGNIEIRAMVKRYMKLEKDNGYDFLTGVRNRRTFN 239

Query: 119 -----ISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFL----SDQLVVVFGT 168
                +  + S N+  +++V FDID+FK  ND +GH VGD V+ ++    SD+L     T
Sbjct: 240 EVVNEVFEVYSNNDLPVAMVMFDIDHFKLFNDQYGHQVGDNVLKYVAQLFSDELFER-KT 298

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
              + R+GGEEF       +  EAA +   +R I+      +    ++ +T+S G+ +  
Sbjct: 299 NAQLFRVGGEEFTIIFRNRTSAEAAPIVKTIRDILVKKTFEVKDDLNVRVTVSIGVTDLK 358

Query: 229 HKEPISTIIY-RADQALYVAKKSGRNRVVCFSDI 261
             +  +   Y R D+ LY AK + RN +    D+
Sbjct: 359 KSDQSAKDFYKRVDKYLYQAKNNSRNSMSVEGDV 392


>gi|264676693|ref|YP_003276599.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|299529509|ref|ZP_07042946.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|262207205|gb|ACY31303.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|298722372|gb|EFI63292.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 359

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 10/223 (4%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101
           +  +  +    I + P       L   LSL+ + I  S    + +  +LK L     ++ 
Sbjct: 100 IALLCGMLFMSIAIRPTPQWAAPLAVQLSLLPLIILHSAYASWSNSRMLKTLARQNLQLK 159

Query: 102 QLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            L RID L+ + +         A +    +  E+  ++  DID FK +ND +GH VGD V
Sbjct: 160 LLGRIDPLTTVYSRDYWWKKARAALHQHRTAKEQTCLLVIDIDRFKSVNDLYGHIVGDDV 219

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +   +     +    GR GG+EF      ++ +EA  +A  +R   + +QI I   P
Sbjct: 220 LKMIGLAIRNSLRSNDIAGRYGGDEFTVLCKHTTAKEAYSVA--MRICEKIAQIRIREYP 277

Query: 215 SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            +HI+ S G+A        ++  I  AD ALY AK  GR++V+
Sbjct: 278 QLHISASIGVAAADEGFGSVTEWIKAADSALYSAKSGGRDQVM 320


>gi|262164362|ref|ZP_06032100.1| GGDEF family protein [Vibrio mimicus VM223]
 gi|262026742|gb|EEY45409.1| GGDEF family protein [Vibrio mimicus VM223]
          Length = 696

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 92/179 (51%), Gaps = 15/179 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQIND 144
           +EL     +++Q +R D L+ L N  A+   +  Y       + +++   D+D FK +ND
Sbjct: 521 QELQNVNRKLAQAARTDSLTQLYNRRAYEEFIQEYWQTYQAQQPITLAVMDLDGFKLVND 580

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GH VGD+++   +D L  +F  P   + RLGG+EFA    G  +Q      N L ++I
Sbjct: 581 QLGHQVGDELLRLFADLLRDIFDRPTDRLTRLGGDEFAVIMSGFEQQSH---LNLLAQVI 637

Query: 204 ENSQINISSGPSI-HITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRVVCFS 259
             ++    +  S  H++IS G A       ++T  +   ADQALY AK +G+ ++V FS
Sbjct: 638 --TEFGQRTAQSFNHLSISIGAASIIPTSAMTTDSFFSLADQALYQAKANGKQQLVVFS 694


>gi|261854660|ref|YP_003261943.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Halothiobacillus neapolitanus c2]
 gi|261835129|gb|ACX94896.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Halothiobacillus neapolitanus c2]
          Length = 788

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 23/191 (12%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----------ISSLGSYNEKLSIVFF 134
           + G  + EL  +  +   L+  D L+GLLN   F          +S  GS +  L+++ F
Sbjct: 339 VVGRDVTELHTTQEQFQILASQDELTGLLNRRFFQVEAQRWIDMLSDDGSKH--LALLVF 396

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           D+DYF+ IND++GH  GD+++  ++ +L      +P+ + R+GG+EFA      ++ E+ 
Sbjct: 397 DLDYFRSINDSYGHERGDQLLQEMARRLQNECVASPLLIARMGGDEFAILVETDNKPESL 456

Query: 194 ILANDLRKIIENSQINISSGPSIHITI----SAGIA-ERCHKEPISTIIYRADQALYVAK 248
               +  K +      I      H+T+    S GI     H   I  ++++AD A+Y AK
Sbjct: 457 SALGEQVKSLTARPFQIE-----HLTLFTSASTGIVIWPEHGRSIGELLHQADSAMYAAK 511

Query: 249 KSGRNRVVCFS 259
           + GRN    FS
Sbjct: 512 EQGRNGHAVFS 522


>gi|218461247|ref|ZP_03501338.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium etli Kim 5]
          Length = 264

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 97/202 (48%), Gaps = 13/202 (6%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF--- 118
           + +L+E   + ++     ++        + EL +S  +I Q++  D L+ L N S F   
Sbjct: 1   QSVLLETRKVPVMDAGGGVVGVLGVARDVTELNVSRQKIHQMAFYDPLTSLPNRSLFNDR 60

Query: 119 ----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
               I+S  S  ++  +   DID+FK +ND  GHPVGD+++   + +L         V R
Sbjct: 61  LRQMITSAVSRGQRAGVALIDIDHFKVVNDTMGHPVGDELLCQAAARLKASVRDYDTVAR 120

Query: 175 LGGEEFA--AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKE 231
           LGG+EFA     +   +    I    L +  E   ++   G  + I+ S GIA       
Sbjct: 121 LGGDEFAILLPEIRQGDDLGRIAGTILERFKEGFLLD---GKEVFISCSVGIALYPDDSA 177

Query: 232 PISTIIYRADQALYVAKKSGRN 253
            ++ ++  AD A+Y+AK+SGRN
Sbjct: 178 DVNDLVKYADSAMYLAKRSGRN 199


>gi|88704969|ref|ZP_01102681.1| sensory box/GGDEF family protein [Congregibacter litoralis KT71]
 gi|88700664|gb|EAQ97771.1| sensory box/GGDEF family protein [Congregibacter litoralis KT71]
          Length = 943

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/191 (29%), Positives = 96/191 (50%), Gaps = 12/191 (6%)

Query: 79  SLLLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLS 130
           S + GY++  S +  +  + +R+  L+R D L+GL N +    +L S        N   +
Sbjct: 477 SRVTGYVASFSDITTIKQNEHRLELLARQDPLTGLPNRTHLRHTLDSRLARAAPGNRSTT 536

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           I+F D+D FK +ND+ GH  GD+++   S +L+        + R+GG+EF A        
Sbjct: 537 ILFIDLDQFKDVNDSLGHSAGDELLKVCSSRLLDSLRDDDILARVGGDEFVALLFDVPGY 596

Query: 191 E-AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAK 248
           E  + +A+ L  ++E   I I  G ++ ++ S GI           T++  AD A+Y AK
Sbjct: 597 ENVSTIASKLIAVLEEP-IAI-GGETVRVSASIGICRYPEDGADTETLLRNADTAMYAAK 654

Query: 249 KSGRNRVVCFS 259
           K+GR    C+S
Sbjct: 655 KAGRGTWECYS 665


>gi|316932665|ref|YP_004107647.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           DX-1]
 gi|315600379|gb|ADU42914.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           DX-1]
          Length = 776

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 84/171 (49%), Gaps = 15/171 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLS-IVFFDIDYFKQINDNFGHP 149
           RI  L+R D L+ L N  +F   +        G    +LS ++F D+D FKQIND  GHP
Sbjct: 330 RIVHLARYDELTALPNRVSFRDEIERILEAEHGRGKTRLSALLFIDLDQFKQINDTLGHP 389

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN-SQ 207
            GD+++  ++++L  +      V R GG+EF       +S ++AA LA   R+I++  S 
Sbjct: 390 CGDRLLCSVAERLRDMLRPEDLVARFGGDEFVVFQQNIASNEDAAALA---RRIVDRLSD 446

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +     + I  S GIA          ++  AD ALY AK  GR    CF
Sbjct: 447 RYLIDHHVVEIGASVGIAMTSPGTKADILLKNADMALYRAKADGRG-TYCF 496


>gi|149181775|ref|ZP_01860266.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
 gi|148850516|gb|EDL64675.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
          Length = 569

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 9/139 (6%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS++  DID+FK +NDN+GH  G++++  L+ +L  + G    V R GGEEF      +S
Sbjct: 427 LSLIMLDIDHFKSVNDNYGHQSGNEILFELARRLETLIGDEGTVARYGGEEFVILLPDTS 486

Query: 189 EQEAAILANDLRKIIENSQINISSG-------PSIHITISAGIAER-CHKEPISTIIYRA 240
           +++A ++A  +R+ I +    + S          + +T S G+A      +   ++I  A
Sbjct: 487 KEDAFLIAEIVRRTIADRPFILHSNLEAERKSLKLKVTASIGVASAPLDADDSMSLIRHA 546

Query: 241 DQALYV-AKKSGRNRVVCF 258
           D+ALY  AK++GRNRV  +
Sbjct: 547 DRALYTGAKQAGRNRVAEY 565


>gi|57866373|ref|YP_188006.1| GGDEF domain-containing protein [Staphylococcus epidermidis RP62A]
 gi|282875673|ref|ZP_06284544.1| diguanylate cyclase (GGDEF) domain protein [Staphylococcus
           epidermidis SK135]
 gi|57637031|gb|AAW53819.1| GGDEF domain protein [Staphylococcus epidermidis RP62A]
 gi|281295700|gb|EFA88223.1| diguanylate cyclase (GGDEF) domain protein [Staphylococcus
           epidermidis SK135]
 gi|329723284|gb|EGG59814.1| diguanylate cyclase (GGDEF) domain protein [Staphylococcus
           epidermidis VCU144]
 gi|329736804|gb|EGG73069.1| diguanylate cyclase (GGDEF) domain protein [Staphylococcus
           epidermidis VCU028]
 gi|329738000|gb|EGG74224.1| diguanylate cyclase (GGDEF) domain protein [Staphylococcus
           epidermidis VCU045]
          Length = 358

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 14/205 (6%)

Query: 63  YILVENLSLVIIS--ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           Y LVE L L+ IS  ITI+  + ++    +   F   NR     + D L+GL N   F  
Sbjct: 150 YELVEILVLIPISFIITIASAITFVD---IWHFFSLVNRYENEDKYDYLTGLGNVKEFDR 206

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L   + K       L+++  DID FK +ND++ H  GD V+  +S  L         + 
Sbjct: 207 HLNEVSSKAEEKKQSLALLLIDIDGFKDVNDHYSHQSGDAVLKQMSQLLKNYVPNQFKIF 266

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEF+      +  ++  LA ++R  +E S  ++ +   I +++S G+     ++  
Sbjct: 267 RNGGEEFSVVIRDYTLDQSVKLAENIRSGVEKSSFHLPNKEVIKLSVSIGVGYLTQEDRK 326

Query: 234 S--TIIYRADQALYVAKKSGRNRVV 256
           S   +   AD  ++VAK  GRN+V+
Sbjct: 327 SQRKVFKDADDMVHVAKSEGRNKVM 351


>gi|262201074|ref|YP_003272282.1| diguanylate cyclase [Gordonia bronchialis DSM 43247]
 gi|262084421|gb|ACY20389.1| diguanylate cyclase [Gordonia bronchialis DSM 43247]
          Length = 356

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 11/167 (6%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+G+LN      S G           ++  +  D+D+FK++ND  GH VGD ++
Sbjct: 173 LSDTDPLTGVLNRRGLAKSWGGMLSASEAGQGRIGFIEADVDHFKELNDRHGHSVGDSIL 232

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII-ENSQINISSGP 214
             +++ L    G    V R+GGEEF          E      +LR  + EN    +S G 
Sbjct: 233 VEIAETLKKAVGPQALVARMGGEEFVIIDHTDGVAELTRQCENLRTAVDENVAATVSLG- 291

Query: 215 SIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++  T+S   A++   +   +  +   AD +LYVAK+SGRN+VV  S
Sbjct: 292 AVCATVSFCRADKPVSDSAIMDELFGIADSSLYVAKRSGRNQVVVTS 338


>gi|254504589|ref|ZP_05116740.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
 gi|222440660|gb|EEE47339.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
          Length = 472

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 18/170 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFFDIDYFKQINDNFGHPVG 151
            RI   +  D L+G+ N        G   +      +++ +  D+D FK IND FGH  G
Sbjct: 298 RRIEHNALHDALTGIGNRRMMTQYFGRAEQSDKSSDEIAALLIDLDGFKSINDRFGHATG 357

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINI 210
           D+VI  +S++L  +      + R+GG+EF  A+   +EQ E A LA D+   I N  I++
Sbjct: 358 DEVIKVISERLRTLLLDQELLVRMGGDEFLVASTVRTEQGELAKLAQDILDRI-NQPIDL 416

Query: 211 SS-----GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                  G SI I+++     R       +++  AD+A+Y AK+SGRN+ 
Sbjct: 417 PGDQGAVGASIGISVT-----RIRPNLERSLLQAADEAMYAAKRSGRNQA 461


>gi|156974316|ref|YP_001445223.1| response regulator [Vibrio harveyi ATCC BAA-1116]
 gi|156525910|gb|ABU70996.1| hypothetical protein VIBHAR_02031 [Vibrio harveyi ATCC BAA-1116]
          Length = 448

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 88/169 (52%), Gaps = 26/169 (15%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++L+  D L+G +N  A  S L          ++  SI++ D+D FK++ND +GH +GD 
Sbjct: 275 AELAHRDALTGAMNRHAVQSWLDQQARQVRWGHDSFSILYMDLDKFKRVNDKYGHQMGDD 334

Query: 154 VIAFLSDQLVVVFGTPMF----VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           ++     + V+V  + +     + R GGEEF      ++ ++A   A  +R        N
Sbjct: 335 ILR----EFVMVIASSILPEDRLVRWGGEEFVVFCPNTNIEQAVKKAELIRD-------N 383

Query: 210 ISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +     +H   +T S G+A+    E +S  + RAD+ LY+AK++GRNR+
Sbjct: 384 VEKHLWVHGELLTCSIGVAQ-MQNERVSETMARADEVLYLAKRNGRNRI 431


>gi|83646100|ref|YP_434535.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83634143|gb|ABC30110.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 539

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 80/165 (48%), Gaps = 9/165 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +++  D L+G+ N   F + L         Y   L +V  DID FK++NDN GH  GD
Sbjct: 361 LKEMALRDPLTGIHNRRFFQNRLSYEFGRAKRYKSDLILVLLDIDKFKEVNDNKGHGAGD 420

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  L+  L         V R+GGEEF        + +       L + I   + N  +
Sbjct: 421 EVLIKLASFLKHSLRISDIVARIGGEEFCIILPEKLDPDVRSFIFRLHRDISLLEFNYIN 480

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            P  HIT S G+A  +        I+ +AD ALY AK++GRNR++
Sbjct: 481 DP-FHITCSMGVATLKTETRDPGEILKQADDALYCAKRTGRNRII 524


>gi|229095277|ref|ZP_04226269.1| Sensory box/GGDEF [Bacillus cereus Rock3-29]
 gi|229114225|ref|ZP_04243646.1| Sensory box/GGDEF [Bacillus cereus Rock1-3]
 gi|228669245|gb|EEL24666.1| Sensory box/GGDEF [Bacillus cereus Rock1-3]
 gi|228688136|gb|EEL42022.1| Sensory box/GGDEF [Bacillus cereus Rock3-29]
          Length = 569

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  I++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIAGKKEFGIIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTNEHTQDEMRQLATSVLSCFQAP- 253

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306


>gi|329916736|ref|ZP_08276411.1| Putative diguanylate cyclase [Oxalobacteraceae bacterium IMCC9480]
 gi|327544666|gb|EGF30118.1| Putative diguanylate cyclase [Oxalobacteraceae bacterium IMCC9480]
          Length = 436

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 9/165 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++   +  D L+GLLN   F       ++        L ++  D D+FK IND FGH VG
Sbjct: 270 KMMHATSCDDLTGLLNRRVFFDKAETELNRWRRSKRPLCVLVIDADHFKSINDRFGHDVG 329

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  L+  +         V R+GGEEFA     +   +A  LA  +R  + N  +  +
Sbjct: 330 DSVLKALAVAIKHCVRQLDIVSRIGGEEFAVLLPYTGIDDAEDLAERVRHCVANLVVEPA 389

Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
               I +TIS G+AE       +  ++  AD ALY AK +GRN+V
Sbjct: 390 E-LDIALTISVGVAEMNDSISDMRGLVKAADGALYCAKNAGRNQV 433


>gi|314933054|ref|ZP_07840420.1| GGDEF domain protein [Staphylococcus caprae C87]
 gi|313654373|gb|EFS18129.1| GGDEF domain protein [Staphylococcus caprae C87]
          Length = 356

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 10/203 (4%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y LVE L L+ IS+ I++    I+   +   F   NR     + D L+GL N   F   L
Sbjct: 148 YDLVEILVLIPISLIITIA-SAITFVDIWHFFSLVNRYENEDKYDYLTGLGNVKEFDRHL 206

Query: 123 GSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     N  L+++  DID FK +ND++ H  GD V+  +S  L         + R 
Sbjct: 207 NEVSRIAEEKNHSLALLLIDIDGFKDVNDSYSHQSGDAVLKQMSQLLKNYVPNQFKIFRN 266

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS- 234
           GGEEF+      S  ++  LA ++R  +E S  ++     I +++S G+      +  S 
Sbjct: 267 GGEEFSVVIRNYSLDQSVKLAENIRSGVEKSSFHLPGKEVIKLSVSIGVGYLTQDDRKSQ 326

Query: 235 -TIIYRADQALYVAKKSGRNRVV 256
             +   AD  ++VAK  GRN+V+
Sbjct: 327 RKVFKDADDMVHVAKNEGRNKVM 349


>gi|306845944|ref|ZP_07478511.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1]
 gi|306273579|gb|EFM55424.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1]
          Length = 461

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 9/170 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S  R    S  D L+GL N           ++      + LSI+  D+D+FKQ+N+ +GH
Sbjct: 288 SMERTITQSVTDGLTGLHNRHYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQYGH 347

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+   S +L         + R GGEEF      +  Q A  +A  +R I+  +  
Sbjct: 348 GAGDHVLREFSARLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRGIVAEAPF 407

Query: 209 NISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            + +G     +T+S G+A  R   + +  +  RA  AL  AK+SGRNR+V
Sbjct: 408 VLDNGKRRASLTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIV 457


>gi|222056105|ref|YP_002538467.1| diguanylate cyclase with GAF sensor [Geobacter sp. FRC-32]
 gi|221565394|gb|ACM21366.1| diguanylate cyclase with GAF sensor [Geobacter sp. FRC-32]
          Length = 352

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 9/168 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +NR   L+  D L+GL NH  F       +     Y++ LSI+  D+D FK+ ND +GH 
Sbjct: 176 HNRTKLLAITDALTGLYNHRHFHHIFSIEMGRCKRYHKDLSIIMLDVDDFKKFNDRYGHS 235

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  + + +        +  R GGEEF      +  ++A  +A  LR+IIE     
Sbjct: 236 TGDLVLTSIGELIAGTLRGVDYAFRYGGEEFIVLLPETRLEQAFQVAERLRQIIETETAT 295

Query: 210 ISSGPSIH-ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  + H +T+S G+A      +    +  + D  LY AK  G+N+V
Sbjct: 296 KFTKLAGHGVTVSVGVASYPVDADKKDQLFEKVDALLYQAKVFGKNKV 343


>gi|209809703|ref|YP_002265242.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238]
 gi|208011266|emb|CAQ81706.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238]
          Length = 416

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 81/163 (49%), Gaps = 14/163 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           L+  Y RI ++   D ++G L    FI +     EK   +  DIDYFK +NDN+GH VGD
Sbjct: 261 LYRFYLRIHRVQCNDRMTGFLRRD-FIENKLKRVEKAFFLIIDIDYFKLVNDNYGHDVGD 319

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFA----AAALGSSEQEAAILANDLRKIIENSQI 208
           +VI  ++ ++           R GGEEF          S + +A +    +R  IEN +I
Sbjct: 320 QVIKVVTQRIKESIRDHDIAIRWGGEEFVIIFYQMDFNSFKNKAEM----IRARIENERI 375

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
                  + ITIS G +E+   E     I RAD+ALY +KK G
Sbjct: 376 -----EDMDITISIGGSEQQESELAFEAIKRADRALYQSKKWG 413


>gi|126651299|ref|ZP_01723506.1| hypothetical protein BB14905_12055 [Bacillus sp. B14905]
 gi|126591828|gb|EAZ85911.1| hypothetical protein BB14905_12055 [Bacillus sp. B14905]
          Length = 505

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 106/219 (48%), Gaps = 17/219 (7%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           Y+  T F  +E  L +N     + + I+L+  ++   ++ ++    ++   L+  D L+G
Sbjct: 285 YVKYTNFTKME-ALQKNTKQFWVLLVIALVTAFVMLLVINKIL---SKTIHLATFDPLTG 340

Query: 112 LLNHSAFISSLGSYNEKLSI-----VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           + N + +I  + S  +K  I     +  D+D FKQ+ND FGH  GD ++   +  L  V 
Sbjct: 341 VYNRATYIRKMDSLLKKRKINRPGLLLIDLDNFKQVNDQFGHAEGDHILIGTAKILKKVV 400

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH----ITISA 222
               FV R GG+EFA     ++E     LA+ +   I   +     G  I     +++S 
Sbjct: 401 KKDGFVVRFGGDEFAIVLYDTTEHHMQQLADAILAQIRTLKF---EGQDIEKWSVLSVSM 457

Query: 223 GIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSD 260
           G A   H E     ++ RADQALY +K +G+++   +++
Sbjct: 458 GGAIYHHPEDSEMSLFERADQALYQSKNAGKDQYSSYAE 496


>gi|115526721|ref|YP_783632.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisA53]
 gi|115520668|gb|ABJ08652.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisA53]
          Length = 1223

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 5/170 (2%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           S  +IS L+  D L+ L N +        +L S +  +S++  D+D FK +ND FGH  G
Sbjct: 788 SARQISYLAFHDGLTELANRAELNKQGHLALESSDRPISVLLIDLDRFKAVNDTFGHAAG 847

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  ++ ++  + G    V R+GG+EFA       +Q  A +A   R I    Q    
Sbjct: 848 DRLLQLVAIRMRALAGPKDLVARVGGDEFAILQAPCPDQREAAIALASRTIEVLRQPFDL 907

Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
            G    I  S GIA R  +      +I++AD ALY  K  GRN  + + D
Sbjct: 908 GGKQASIGASIGIAVRSPQTVRFDDLIHQADLALYEIKSGGRNDCLLYED 957


>gi|15923736|ref|NP_371270.1| hypothetical protein SAV0746 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926423|ref|NP_373956.1| hypothetical protein SA0701 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21282437|ref|NP_645525.1| hypothetical protein MW0708 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49483003|ref|YP_040227.1| hypothetical protein SAR0800 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49485618|ref|YP_042839.1| hypothetical protein SAS0711 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57651584|ref|YP_185683.1| GGDEF domain-containing protein [Staphylococcus aureus subsp.
           aureus COL]
 gi|82750450|ref|YP_416191.1| hypothetical protein SAB0698c [Staphylococcus aureus RF122]
 gi|87161910|ref|YP_493433.1| GGDEF domain-containing protein [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194524|ref|YP_499319.1| hypothetical protein SAOUHSC_00760 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148267206|ref|YP_001246149.1| diguanylate cyclase [Staphylococcus aureus subsp. aureus JH9]
 gi|150393255|ref|YP_001315930.1| diguanylate cyclase [Staphylococcus aureus subsp. aureus JH1]
 gi|151220927|ref|YP_001331749.1| GGDEF domain-containing protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156979074|ref|YP_001441333.1| hypothetical protein SAHV_0743 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509014|ref|YP_001574673.1| diguanylate cyclase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141236|ref|ZP_03565729.1| diguanylate cyclase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253315820|ref|ZP_04839033.1| GGDEF domain-containing protein [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253731374|ref|ZP_04865539.1| ABC superfamily ATP binding cassette transporter, binding protein
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|255005537|ref|ZP_05144138.2| GGDEF domain-containing protein [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257424866|ref|ZP_05601293.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427534|ref|ZP_05603933.1| GGDEF domain-containing protein [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257430165|ref|ZP_05606549.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432866|ref|ZP_05609226.1| GGDEF domain-containing protein [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257435770|ref|ZP_05611818.1| GGDEF domain-containing protein [Staphylococcus aureus subsp.
           aureus M876]
 gi|257794933|ref|ZP_05643912.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|258418249|ref|ZP_05682514.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|258421546|ref|ZP_05684471.1| GGDEF domain-containing protein [Staphylococcus aureus A9719]
 gi|258430741|ref|ZP_05688453.1| diguanylate cyclase GGDEF domain-containing protein [Staphylococcus
           aureus A9299]
 gi|258441767|ref|ZP_05691039.1| GGDEF domain-containing protein [Staphylococcus aureus A8115]
 gi|258449603|ref|ZP_05697705.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|258452954|ref|ZP_05700948.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|258454003|ref|ZP_05701975.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|262049530|ref|ZP_06022400.1| hypothetical protein SAD30_0952 [Staphylococcus aureus D30]
 gi|262052343|ref|ZP_06024546.1| hypothetical protein SA930_1069 [Staphylococcus aureus 930918-3]
 gi|269202366|ref|YP_003281635.1| GGDEF domain-containing protein [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282894515|ref|ZP_06302744.1| membrane protein [Staphylococcus aureus A8117]
 gi|282903376|ref|ZP_06311267.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus C160]
 gi|282905156|ref|ZP_06313013.1| diguanylate cyclase GGDEF domain-containing protein [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282908132|ref|ZP_06315963.1| diguanylate cyclase GGDEF domain-containing protein [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282910391|ref|ZP_06318195.1| diguanylate cyclase GGDEF domain-containing protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282913586|ref|ZP_06321375.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus M899]
 gi|282918539|ref|ZP_06326276.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C427]
 gi|282922043|ref|ZP_06329740.1| conserved hypothetical membrane protein [Staphylococcus aureus
           A9765]
 gi|282923505|ref|ZP_06331185.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C101]
 gi|282926612|ref|ZP_06334242.1| conserved hypothetical membrane protein [Staphylococcus aureus
           A10102]
 gi|283957578|ref|ZP_06375031.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284023767|ref|ZP_06378165.1| GGDEF domain-containing protein [Staphylococcus aureus subsp.
           aureus 132]
 gi|293500631|ref|ZP_06666482.1| membrane protein in llm 5'region [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293509579|ref|ZP_06668290.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M809]
 gi|293524165|ref|ZP_06670852.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus M1015]
 gi|294850533|ref|ZP_06791261.1| membrane protein in llm 5'region [Staphylococcus aureus A9754]
 gi|295406469|ref|ZP_06816275.1| membrane protein in llm 5'region [Staphylococcus aureus A8819]
 gi|295427324|ref|ZP_06819959.1| membrane protein in llm 5'region [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296275155|ref|ZP_06857662.1| GGDEF domain-containing protein [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297208527|ref|ZP_06924956.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297245195|ref|ZP_06929069.1| membrane protein in llm 5'region [Staphylococcus aureus A8796]
 gi|297590322|ref|ZP_06948961.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus MN8]
 gi|300912619|ref|ZP_07130062.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381633|ref|ZP_07364283.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|75383221|sp|Q7DLB7|YLLM_STAAU RecName: Full=Uncharacterized membrane protein in llm 5'region;
           AltName: Full=ORF1
 gi|81649746|sp|Q6GB84|Y711_STAAS RecName: Full=Uncharacterized membrane protein SAS0711
 gi|81651530|sp|Q6GIP5|Y800_STAAR RecName: Full=Uncharacterized membrane protein SAR0800
 gi|81694985|sp|Q5HHS4|Y809_STAAC RecName: Full=Uncharacterized membrane protein SACOL0809
 gi|81704599|sp|Q7A1G8|Y708_STAAW RecName: Full=Uncharacterized membrane protein MW0708
 gi|81704864|sp|Q7A2V2|Y746_STAAM RecName: Full=Uncharacterized membrane protein SAV0746
 gi|81781939|sp|Q99VM8|Y701_STAAN RecName: Full=Uncharacterized membrane protein SA0701
 gi|122539994|sp|Q2G061|Y760_STAA8 RecName: Full=Uncharacterized membrane protein SAOUHSC_00760
 gi|123486772|sp|Q2FIP5|Y730_STAA3 RecName: Full=Uncharacterized membrane protein SAUSA300_0730
 gi|123547672|sp|Q2YSF9|Y698_STAAB RecName: Full=Uncharacterized membrane protein SAB0698c
 gi|13700637|dbj|BAB41934.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14246515|dbj|BAB56908.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|14787098|dbj|BAB62079.1| ORF1~ORF1 is located upstream of llm in the opposite direction.
           [Staphylococcus aureus]
 gi|21203874|dbj|BAB94573.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49241132|emb|CAG39810.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244061|emb|CAG42487.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57285770|gb|AAW37864.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus COL]
 gi|82655981|emb|CAI80386.1| probable membrane protein [Staphylococcus aureus RF122]
 gi|87127884|gb|ABD22398.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202082|gb|ABD29892.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740275|gb|ABQ48573.1| diguanylate cyclase [Staphylococcus aureus subsp. aureus JH9]
 gi|149945707|gb|ABR51643.1| diguanylate cyclase [Staphylococcus aureus subsp. aureus JH1]
 gi|150373727|dbj|BAF66987.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156721209|dbj|BAF77626.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|160367823|gb|ABX28794.1| diguanylate cyclase GGDEF domain protein [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|253724899|gb|EES93628.1| ABC superfamily ATP binding cassette transporter, binding protein
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|257272436|gb|EEV04559.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275727|gb|EEV07200.1| GGDEF domain-containing protein [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257279362|gb|EEV09963.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257282281|gb|EEV12416.1| GGDEF domain-containing protein [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284961|gb|EEV15080.1| GGDEF domain-containing protein [Staphylococcus aureus subsp.
           aureus M876]
 gi|257788905|gb|EEV27245.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|257839042|gb|EEV63521.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|257842472|gb|EEV66896.1| GGDEF domain-containing protein [Staphylococcus aureus A9719]
 gi|257849413|gb|EEV73383.1| diguanylate cyclase GGDEF domain-containing protein [Staphylococcus
           aureus A9299]
 gi|257852236|gb|EEV76163.1| GGDEF domain-containing protein [Staphylococcus aureus A8115]
 gi|257857111|gb|EEV80010.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|257859465|gb|EEV82319.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|257863868|gb|EEV86624.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|259159783|gb|EEW44824.1| hypothetical protein SA930_1069 [Staphylococcus aureus 930918-3]
 gi|259162366|gb|EEW46938.1| hypothetical protein SAD30_0952 [Staphylococcus aureus D30]
 gi|262074656|gb|ACY10629.1| GGDEF domain-containing protein [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269940323|emb|CBI48700.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282314373|gb|EFB44763.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C101]
 gi|282317673|gb|EFB48045.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C427]
 gi|282322618|gb|EFB52940.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus M899]
 gi|282325783|gb|EFB56091.1| diguanylate cyclase GGDEF domain-containing protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282327797|gb|EFB58079.1| diguanylate cyclase GGDEF domain-containing protein [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282331563|gb|EFB61075.1| diguanylate cyclase GGDEF domain-containing protein [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282591505|gb|EFB96577.1| conserved hypothetical membrane protein [Staphylococcus aureus
           A10102]
 gi|282593701|gb|EFB98693.1| conserved hypothetical membrane protein [Staphylococcus aureus
           A9765]
 gi|282596331|gb|EFC01292.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus C160]
 gi|282763228|gb|EFC03359.1| membrane protein [Staphylococcus aureus A8117]
 gi|283791029|gb|EFC29844.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285816448|gb|ADC36935.1| Hypothetical protein with diguanylate-cyclase (GGDEF) domain
           [Staphylococcus aureus 04-02981]
 gi|290921128|gb|EFD98189.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus M1015]
 gi|291095636|gb|EFE25897.1| membrane protein in llm 5'region [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467676|gb|EFF10191.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M809]
 gi|294822612|gb|EFG39053.1| membrane protein in llm 5'region [Staphylococcus aureus A9754]
 gi|294968614|gb|EFG44637.1| membrane protein in llm 5'region [Staphylococcus aureus A8819]
 gi|295128712|gb|EFG58343.1| membrane protein in llm 5'region [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296886782|gb|EFH25686.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297177866|gb|EFH37115.1| membrane protein in llm 5'region [Staphylococcus aureus A8796]
 gi|297576621|gb|EFH95336.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus MN8]
 gi|298694078|gb|ADI97300.1| hypothetical protein SAOV_0783c [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300886865|gb|EFK82067.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus TCH70]
 gi|302332455|gb|ADL22648.1| diguanylate cyclase GGDEF domain protein [Staphylococcus aureus
           subsp. aureus JKD6159]
 gi|302750643|gb|ADL64820.1| diguanylate cyclase GGDEF domain protein [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304339996|gb|EFM05940.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312438828|gb|ADQ77899.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus TCH60]
 gi|312829238|emb|CBX34080.1| diguanylate cyclase (GGDEF) domain protein [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315129430|gb|EFT85423.1| diguanylate cyclase GGDEF domain protein [Staphylococcus aureus
           subsp. aureus CGS03]
 gi|315194364|gb|EFU24756.1| diguanylate cyclase GGDEF domain protein [Staphylococcus aureus
           subsp. aureus CGS00]
 gi|315196421|gb|EFU26772.1| diguanylate cyclase GGDEF domain protein [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320141989|gb|EFW33817.1| diguanylate cyclase domain protein [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329313467|gb|AEB87880.1| Uncharacterized membrane protein [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329723785|gb|EGG60313.1| diguanylate cyclase (GGDEF) domain protein [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329724531|gb|EGG61038.1| diguanylate cyclase (GGDEF) domain protein [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329729623|gb|EGG66024.1| diguanylate cyclase (GGDEF) domain protein [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 356

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 9/168 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
           NR     + D L+GL N   F   L   + K       ++++  DID FK +ND + H  
Sbjct: 182 NRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHKS 241

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  +S  L         + R GGEEF+      S  ++  LA ++R  +E S  ++
Sbjct: 242 GDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFHL 301

Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
            +   I +++S G+      +P S   +   AD  ++VAK  GRN+V+
Sbjct: 302 PNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVM 349


>gi|311696803|gb|ADP99676.1| diguanylate cyclase [marine bacterium HP15]
          Length = 336

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 32/184 (17%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL---GSYNEKL----SIVFFDIDYFKQINDNFGHPV 150
            R+  L+ ID L+G+ N  +    L    +  E+     ++V  DID+FK+IND  GH V
Sbjct: 160 ERLEHLATIDPLTGIKNRRSMDQELDLAAANAERTGLPYALVMLDIDHFKKINDEHGHGV 219

Query: 151 GDKVIAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           GD V+  L          SDQL           R GGEEF     G        + N+L+
Sbjct: 220 GDGVLTDLVALLKQNTRKSDQLF----------RYGGEEFVLLLPGVDGIGLKAVMNNLQ 269

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +++     +    P   +T S G+A   H E + + + RAD ALY AK++GR+ VV F+D
Sbjct: 270 QVLRKYMKH----PGGSVTASFGVALLEHGESVDSWLARADAALYEAKEAGRDCVV-FAD 324

Query: 261 IENN 264
            +  
Sbjct: 325 AQRT 328


>gi|326790142|ref|YP_004307963.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium lentocellum DSM 5427]
 gi|326540906|gb|ADZ82765.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium lentocellum DSM 5427]
          Length = 949

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 18/167 (10%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           R+ +L+  D L+G LN   F+ SL      G   +  +++F D+D FK+IND  GH +GD
Sbjct: 517 RVRKLAFFDVLTGCLNKQTFMESLETWLSPGEAIKDAALLFIDLDDFKKINDTLGHEMGD 576

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEF-----AAAALGSSEQEAAILANDLRKIIENSQ 207
           K++ +++  L  +     F+ R GG+EF     + + LG  ++    + N     I    
Sbjct: 577 KLLNYVAKVLRHIIPQDSFISRFGGDEFVIFKTSVSDLGEIQEMVYSILN-----IFQDP 631

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRN 253
           I I  G  IHIT S GIA          I+ + AD A+Y AK +G+N
Sbjct: 632 IRI-DGKDIHITCSIGIALYPLDGTSGDILLKNADTAMYKAKDNGKN 677


>gi|317050266|ref|YP_004111382.1| diguanylate cyclase [Desulfurispirillum indicum S5]
 gi|316945350|gb|ADU64826.1| diguanylate cyclase [Desulfurispirillum indicum S5]
          Length = 643

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 83/170 (48%), Gaps = 9/170 (5%)

Query: 98  NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           N + + + +D L+GL N           IS +    + + ++  DIDYFKQIND FGH V
Sbjct: 466 NTLRESAMVDTLTGLYNRRFLQEHTKQIISGVLRRRKTIGLLLCDIDYFKQINDTFGHDV 525

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+   +  +         V R GGEEF    L   + +A  +A  +R  I + +I +
Sbjct: 526 GDLVLKEAAACMRNSVREADIVIRFGGEEFLILLLDVDQGDAIDVAEKIRVKIGDMKITV 585

Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                I  TIS G++E     +     I  AD ALY AK++GRN+ V F 
Sbjct: 586 PDA-VIQKTISIGVSEFPGDTDGFWQAIKFADVALYKAKETGRNKTVRFE 634


>gi|163844769|ref|YP_001622424.1| diguanylate cyclase [Brucella suis ATCC 23445]
 gi|163675492|gb|ABY39602.1| diguanylate cyclase (GGDEF) domain [Brucella suis ATCC 23445]
          Length = 237

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 113/229 (49%), Gaps = 23/229 (10%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY- 97
           IAT+I I+       G+    G++   V  L  +++   I++ LG    S L+EL  SY 
Sbjct: 18  IATIISIS----LSTGIRFALGVKSDTVTILVRLLLPFLIAMPLGGFWFSRLEELERSYR 73

Query: 98  ------NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFGH 148
                 N +++++ +D L+GLLN  +FI    + N+  +  +F   D+DY KQIND +GH
Sbjct: 74  TAVKRANELARVASVDPLTGLLNRRSFIQQFNAANKAGARGWFLIVDVDYLKQINDQYGH 133

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILAN-DLRK--IIE 204
           P GD  I  ++  L     +   + R+GG+EF A    G+     ++L++  LR   ++ 
Sbjct: 134 PAGDDAIIAVAQALEDCLSSDSLIARIGGDEFCAFVPKGAINDVDSVLSDISLRADGLLR 193

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             + N+ S     +T+S G       +    ++  AD+ LY  KKS R 
Sbjct: 194 EKRPNVGS----SLTVSVGRISCKTGQIFEEVLSIADEQLY-RKKSQRQ 237


>gi|170727942|ref|YP_001761968.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169813289|gb|ACA87873.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
          Length = 328

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 81/179 (45%), Gaps = 26/179 (14%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNE---------------------KLSIVFFDIDYFKQI 142
           S  D L+GLLN  AF+  L    +                     +  +  FDID FK I
Sbjct: 137 SETDPLTGLLNRKAFLPRLTKVAKLIKQEAIDCALDPASCDLSAKRYWLCIFDIDKFKVI 196

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH  GD+++  L   +   F     + R GG+EF        + E   L       
Sbjct: 197 NDTFGHLYGDEILIDLVKVMKATFNELDSLFRFGGDEFVVILSKREKAEMLHLCESF--- 253

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             + +++I  G  + +TIS GI E    E  S ++ +AD+ALY  K++GR+RV  + D+
Sbjct: 254 --SHKLSIHHGREVKVTISMGIIEINSIEEPSELLVKADKALYYIKETGRDRVGLYEDL 310


>gi|146305515|ref|YP_001185980.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas mendocina ymp]
 gi|145573716|gb|ABP83248.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas mendocina ymp]
          Length = 422

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 89/168 (52%), Gaps = 14/168 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q ++ D L+GL N  AF                ++S+   D+D+FKQIND FGH  GD
Sbjct: 252 LKQAAQFDALTGLNNRRAFYEQGLQLLQQAQREGREVSVAMLDLDHFKQINDGFGHASGD 311

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +   +  L       M +GRLGGEEFA  +L  +++  A L ++LR   + + ++ ++
Sbjct: 312 SALVVFARALSAALPQ-MLLGRLGGEEFALLSLDEADRVEAAL-DELRH--QCAALHYAA 367

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           G +  ++ SAG+  R   + + ++++ AD  LY AK+ G +   C +D
Sbjct: 368 G-APPLSFSAGLY-RGEPDDLESLLHEADVRLYRAKQQGPH-ARCEAD 412


>gi|330830625|ref|YP_004393577.1| sensor histidine kinase [Aeromonas veronii B565]
 gi|328805761|gb|AEB50960.1| Sensor histidine kinase [Aeromonas veronii B565]
          Length = 512

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 79/170 (46%), Gaps = 24/170 (14%)

Query: 98  NRISQLSRIDCLSGLLNHS--AFISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKV 154
            R++ LS  D L+G  N      +   G     +  I+ FD D+FK++NDNFGH VGD V
Sbjct: 345 QRLNYLSCHDALTGAFNRHYLVLLEQAGELARLQAGILMFDADHFKRVNDNFGHAVGDIV 404

Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +  L          +D+L+          R GGEEF      +   +   LA  LRK + 
Sbjct: 405 LIRLVQICQQQIRPTDRLI----------RWGGEEFLLLIGRADATQLGELAERLRKAVA 454

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +     +  P + +TIS G        P+   + RAD ALY AK +GRNR
Sbjct: 455 DHDW-AAIEPGLEVTISLGYLPHQENLPLHEAVRRADVALYQAKANGRNR 503


>gi|328470826|gb|EGF41737.1| putative virulence-mediating protein VirC [Vibrio parahaemolyticus
           10329]
          Length = 637

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 18/168 (10%)

Query: 100 ISQLSRIDCLSGLLNH---SAFISSLG--SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           ++Q S  D L+GL N      ++  +   + +   ++   D+D+FK  ND +GH +GD++
Sbjct: 468 LTQESTTDLLTGLHNRRYLEVWLEKMARRTPDRTFALAVLDVDHFKAFNDTYGHDIGDQM 527

Query: 155 IAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           +  ++     +F      G    R GGEEF      +   + A     LR +IEN+ + I
Sbjct: 528 LMHIAS----IFNESTRSGDLLIRWGGEEFVLLVEVNDPNDCAKSLERLRHVIENTPLII 583

Query: 211 SSGPSIHITISAGIAERCH----KEPISTIIYRADQALYVAKKSGRNR 254
            S P I+ TIS G  +R      K+      + ADQALY AK++GRN+
Sbjct: 584 DSKP-INATISLGAVDRLSAQTIKQEWDQWFFLADQALYDAKQAGRNQ 630


>gi|325925986|ref|ZP_08187352.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
 gi|325543582|gb|EGD14999.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
          Length = 983

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 79/156 (50%), Gaps = 10/156 (6%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN +  +++L             L++V  D+D+FK +ND  GH  GD V+A + 
Sbjct: 818 DELTGLLNRAGILAALREMLLHAEHTGRPLAVVLIDLDHFKLVNDQHGHLAGDAVLAGVG 877

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            ++  +      +GR GGEE  A   G +      L      I  +  I+   G  +H+T
Sbjct: 878 RRMDTLMRGDDRIGRYGGEELLALLPGLNLDATHRLDALHHGICGDYPID---GGWLHVT 934

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+A     E +  ++ RAD ALY AK+SGRNRV
Sbjct: 935 CSVGVAWFQRGETLEQLLARADAALYRAKRSGRNRV 970


>gi|224826822|ref|ZP_03699922.1| diguanylate cyclase with PAS/PAC sensor [Lutiella nitroferrum 2002]
 gi|224601042|gb|EEG07225.1| diguanylate cyclase with PAS/PAC sensor [Lutiella nitroferrum 2002]
          Length = 770

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 86/175 (49%), Gaps = 20/175 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            RI  L+  D L+GL N +  +            Y  +L+I+F D+D FK IND +GH V
Sbjct: 594 ERIRHLAHHDYLTGLPNRAHLLERASQALALARRYQRRLAILFLDLDRFKPINDRYGHDV 653

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-----AALGSSEQEAAILANDLRKIIEN 205
           GD V+  ++D+L+ +      V RLGG+EF           S EQ    LA+ LR  IE 
Sbjct: 654 GDVVLRTVADRLLALVRESDTVCRLGGDEFVILLAEYHDFASVEQ----LAHTLRTAIE- 708

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            Q        + ++ S GIA    H + +  +I RAD A+Y A K+G    +C +
Sbjct: 709 -QPCEVGALRLAVSASIGIATYPEHGDSVGALIQRADAAMYRA-KTGAAPPICIA 761


>gi|223983983|ref|ZP_03634141.1| hypothetical protein HOLDEFILI_01431 [Holdemania filiformis DSM
           12042]
 gi|223964059|gb|EEF68413.1| hypothetical protein HOLDEFILI_01431 [Holdemania filiformis DSM
           12042]
          Length = 406

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 20/170 (11%)

Query: 100 ISQLSRIDCLSGLLNH---SAFISS---LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           + +L+  DCL+GL N       I          +++++   DID FKQIND +GH  GD+
Sbjct: 242 LRRLAHQDCLTGLYNRFKIQQLIEETLRCAPEGKRMTLAVMDIDNFKQINDAYGHDCGDE 301

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINIS 211
            +   + ++  +F     VGR+GG+EF       G+ EQ +A L    +K+    Q    
Sbjct: 302 ALRQTAAEIRELFAPEDLVGRIGGDEFVVLLQEAGTGEQASARLEQIRQKLQHRHQP--- 358

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYR-----ADQALYVAKKSGRNRVV 256
             P++   IS  I   C   P+    YR     AD AL  AK+ G+N  V
Sbjct: 359 --PAVLTGISCSIG--CAFFPVQGTTYRQLFLKADAALIQAKRQGKNSCV 404


>gi|192289273|ref|YP_001989878.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris TIE-1]
 gi|192283022|gb|ACE99402.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris TIE-1]
          Length = 879

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/161 (33%), Positives = 79/161 (49%), Gaps = 8/161 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           RIS L+  D L+ L N + F   L       S     ++++ DID FK IND  GHPVGD
Sbjct: 448 RISYLAHFDSLTDLPNRTMFRQRLENELQRASRGAPFALLYIDIDEFKSINDTLGHPVGD 507

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS 211
           +++  ++ +L        FV RLGG+EFA   +G S   EA  L + + + I      + 
Sbjct: 508 ELLKQVAVRLRDCVRETDFVARLGGDEFAIIQIGVSGADEATALVDRIYESIRLPYQCLG 567

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
              S   +I   IA R   + +  ++  AD A+Y AK  GR
Sbjct: 568 HQLSTDASIGIAIAPRDGAD-LDQLVKNADLAMYSAKAEGR 607


>gi|39933854|ref|NP_946130.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           CGA009]
 gi|39647701|emb|CAE26221.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS domain [Rhodopseudomonas palustris CGA009]
          Length = 904

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/161 (33%), Positives = 79/161 (49%), Gaps = 8/161 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           RIS L+  D L+ L N + F   L       S     ++++ DID FK IND  GHPVGD
Sbjct: 473 RISYLAHFDSLTDLPNRTMFRQRLENELQRASRGAPFALLYIDIDEFKSINDTLGHPVGD 532

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS 211
           +++  ++ +L        FV RLGG+EFA   +G S   EA  L + + + I      + 
Sbjct: 533 ELLKQVAVRLRDCVRETDFVARLGGDEFAIIQIGVSGADEATALVDRIYESIRLPYQCLG 592

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
              S   +I   IA R   + +  ++  AD A+Y AK  GR
Sbjct: 593 HQLSTDASIGIAIAPRDGAD-LDQLVKNADLAMYSAKAEGR 632


>gi|330951652|gb|EGH51912.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 630

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 105/210 (50%), Gaps = 21/210 (10%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--- 115
           +G   +L  ++  + ++ T  LL+   +   + EL  +  +I  L+  D L+GL N    
Sbjct: 245 HGAPLVLDISVEFITLNNTACLLM---NARDIGELKNAQAQIQHLAYHDPLTGLPNRALL 301

Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
               S  +S L   N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         
Sbjct: 302 LDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 361

Query: 172 VGRLGGEEFAA--AALGSSEQEAAI----LANDLRKIIENSQINISSGPSIHITISAGIA 225
           V RLGG+EF      L  S+ E       LA++LR ++  ++     G  + +T S G+ 
Sbjct: 362 VARLGGDEFVVLICGLEGSQDEVTRQVRELADNLRNLL--AEPMFLDGHRLQVTPSIGVV 419

Query: 226 --ERCHKEPISTIIYRADQALYVAKKSGRN 253
                   P + ++ RAD ALY AK  GRN
Sbjct: 420 LIPDDGLTP-ADLLKRADIALYRAKDCGRN 448


>gi|296273930|ref|YP_003656561.1| ammonium transporter [Arcobacter nitrofigilis DSM 7299]
 gi|296098104|gb|ADG94054.1| ammonium transporter [Arcobacter nitrofigilis DSM 7299]
          Length = 605

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 9/171 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHP 149
           +L  S N +   +  D L+G+ N       +     N    +   DID FK +ND +GH 
Sbjct: 440 KLTTSNNNLRTKAYYDALTGIHNRRGLYERIKDKILNPNYCLAILDIDKFKLVNDTYGHD 499

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+++  L++ +           R GGEEF         Q A  +A  LR  I  ++  
Sbjct: 500 VGDEILKELANSVSKKIRQNDIFARWGGEEFILLLKTKDLQVAENIAEKLRIDISKTEF- 558

Query: 210 ISSGPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
               P++ HIT S GI+  +  ++    +   AD+ALY AK++GRNRV  F
Sbjct: 559 ----PTVKHITASFGISSFKNSEQSFEEVFKNADKALYQAKENGRNRVFTF 605


>gi|296108300|ref|YP_003620001.1| sensory box protein, EAL domain, GGDEF domain, signal transduction
           protein [Legionella pneumophila 2300/99 Alcoy]
 gi|295650202|gb|ADG26049.1| sensory box protein, EAL domain, GGDEF domain, signal transduction
           protein [Legionella pneumophila 2300/99 Alcoy]
          Length = 371

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 108/224 (48%), Gaps = 25/224 (11%)

Query: 48  IFLFYIGLTPFYGL--EYIL-VENLS-LVIISITISLLLGYISGS-----ILKE----LF 94
           +F FYI   P Y +  EY+  ++N + L I ++  ++L  ++  +     +LKE    L 
Sbjct: 143 VFEFYI---PIYSISQEYVFFLDNTNHLFIFALIFTVLYHFLVQNSQYELLLKEQNYLLI 199

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
               +   LS  D L+ L N   F + L        +  E +++ F D+D FK IND +G
Sbjct: 200 ADKEKFHYLSHHDSLTNLPNRPYFHAHLQTLLENTDTKKEAITLYFMDLDKFKPINDEYG 259

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+++   S +L   F    F+ RLGG+EF A  +     + A  A  LR   E  Q
Sbjct: 260 HEFGDQLLLLTSKRLQSCFRKNDFIARLGGDEFTAIIVHKPHDQIA-EALTLRIEQEFEQ 318

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250
             + +G +IH TIS GIA      +    ++  AD+A+Y  K+ 
Sbjct: 319 PFVINGQTIHCTISVGIANYPRNAKNAEDLLKWADKAMYDNKRK 362


>gi|262379338|ref|ZP_06072494.1| WspR [Acinetobacter radioresistens SH164]
 gi|262298795|gb|EEY86708.1| WspR [Acinetobacter radioresistens SH164]
          Length = 419

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 10/172 (5%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNF 146
           +I  + +  LS+ D L+ + N   F  +L S+  +       LS++F D+D+FK  ND +
Sbjct: 237 YIHASELLHLSQHDELTQISNRRNFDETLDSFYRQSRKEGTPLSLLFIDVDFFKNYNDFY 296

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH +GDKVI  ++  +        FV R GGEEF      +    A  +A+++ + IE  
Sbjct: 297 GHQMGDKVIYSIARAIKNSIRHRDFVARYGGEEFVVLLPETEAHGAYAVASNIYREIERL 356

Query: 207 QI-NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
            I +  S  + +IT+S GI     +  ++   ++  ADQALY AK+ GRN++
Sbjct: 357 AIPHERSCIASYITVSLGITIYRGEAAVTQEALLESADQALYRAKQLGRNQI 408


>gi|170025853|ref|YP_001722358.1| diguanylate cyclase [Yersinia pseudotuberculosis YPIII]
 gi|169752387|gb|ACA69905.1| diguanylate cyclase [Yersinia pseudotuberculosis YPIII]
          Length = 378

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 118/247 (47%), Gaps = 21/247 (8%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLL---LGYI-- 85
            F+IF  + I +++ FL +   T    +  IL++   N+  +I +I + L+   L ++  
Sbjct: 124 LFTIFFISTIALSDNFLAFCLHTAPSAITVILLDDFHNIFRIIFTIMLPLIGFSLHHLML 183

Query: 86  ------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFD 135
                 +  ++  L     + S LS ID L+ L N     S L +   +      ++  D
Sbjct: 184 RRTDNFTRKLVDHLSNEREKFSDLSMIDPLTSLYNRRGLESKLETLLSQSPGNHYVLLLD 243

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK  NDN+GH +GD+ +  +S  +     +   V R GGEEF       SE+ A+ L
Sbjct: 244 IDHFKAYNDNYGHTMGDQALVRISAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYASQL 303

Query: 196 ANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           A  +R+ +    I    +   S  +T+SAGI+       ++  +  AD+ALY AK++GRN
Sbjct: 304 AERVRQRVLGLDIPHVFNHKVSTTVTLSAGISP-LQAYDLAASLKAADEALYRAKRNGRN 362

Query: 254 RVVCFSD 260
            +    D
Sbjct: 363 NIEFAKD 369


>gi|332993947|gb|AEF04002.1| response regulator receiver modulated diguanylate cyclase
           [Alteromonas sp. SN2]
          Length = 669

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 88/164 (53%), Gaps = 7/164 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-YNEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAF 157
           +Q S ID L+G L   A    +    + K++  +V  D+D+FKQ+ND +GH VGD+V+  
Sbjct: 499 AQASEIDELTGALFRRAMFKEIAKPMSNKIASCLVLIDLDHFKQVNDRYGHVVGDEVLTK 558

Query: 158 LSDQLVV--VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              Q+V   +  T  F  R GGEEF      ++E+ A  L  D++K +E+++   ++  +
Sbjct: 559 FG-QVVRQRIRKTDKFC-RYGGEEFLLYLHDTTEENANALLEDIKKSLESNKNWSATEST 616

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              + SAG+ +   +  I+ II   D  LY AK +GR ++   S
Sbjct: 617 FSASFSAGVIQVKGERNINKIIKACDNLLYRAKSTGRGKIETMS 660


>gi|330501418|ref|YP_004378287.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328915704|gb|AEB56535.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 601

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 84/172 (48%), Gaps = 22/172 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+S+L+  D L+GL N +A    L          +E L+++  D+D FK IND  GH  
Sbjct: 431 QRLSELALQDPLTGLANRTALQQHLDQALARSLRRDELLAVMLIDLDGFKPINDQHGHRF 490

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN------DLRKII 203
           GD+V+A ++ +L           RLGG+EF        S ++A  LA       D    +
Sbjct: 491 GDQVLAEIAGRLRQYIRDADLPARLGGDEFVVICENVQSAEDAQDLAKRLLEGLDTPMYL 550

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           E+  + +  G SI I ++ G       +  +T+I  AD A+Y AK  GRNRV
Sbjct: 551 EDRAVRV--GASIGIALTRG------GDDATTLIRLADAAMYRAKAEGRNRV 594


>gi|229089690|ref|ZP_04220951.1| Sensory box/GGDEF [Bacillus cereus Rock3-42]
 gi|228693589|gb|EEL47291.1| Sensory box/GGDEF [Bacillus cereus Rock3-42]
          Length = 569

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++        +  +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQAP- 253

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306


>gi|218709773|ref|YP_002417394.1| GGDEF family protein [Vibrio splendidus LGP32]
 gi|218322792|emb|CAV18969.1| GGDEF family protein [Vibrio splendidus LGP32]
          Length = 512

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 97/198 (48%), Gaps = 16/198 (8%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQ-------LSRIDCLSGLLNHSAFISSLG 123
           + ++  TISLLL YI    ++E    Y  I +       L+  D L+ + N  AF   L 
Sbjct: 316 IALVGTTISLLLSYIVKLQVQEKVRLYKMIDERTEELRFLANHDSLTEIYNRRAFNKVLD 375

Query: 124 SY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                ++  S++ FD+D FK IND FGHP GD ++  +   +         V R+GG+EF
Sbjct: 376 KAIQGDKPFSLIGFDVDKFKGINDQFGHPAGDALLVHVIQLISGSLKEGDHVFRMGGDEF 435

Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINIS-SGPSIHITISAGIAERCHKEPISTIIY 238
               + SS  E   LA  L  I++  S+ +    G  +  T+S G   R  KE I  ++ 
Sbjct: 436 ---GIISSVIEHDALARYLECILDTVSESHCEHKGQLLSCTLSIGATIRS-KEDIEELLQ 491

Query: 239 RADQALYVAKKSGRNRVV 256
           + D  LY++K +GRNRV 
Sbjct: 492 KTDSMLYLSKSNGRNRVT 509


>gi|190895007|ref|YP_001985300.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190700668|gb|ACE94750.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 587

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 91/175 (52%), Gaps = 9/175 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNE-KLSIVFFDIDYFKQINDNF 146
           KEL  S       +  D L+GLLN  +F   +S L      K++++  D+D+FK+IND F
Sbjct: 146 KELERSRTEARFAADHDHLTGLLNRRSFDFALSELARQESVKVALLHIDVDHFKEINDRF 205

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILANDLRKIIEN 205
           GH VGD V+  +S  L+          RLGG+EFA        ++  A+L +  R++   
Sbjct: 206 GHAVGDLVLCHVSKILLEAISAGDVAARLGGDEFAVVITEDECDRTIAVLDHIQRRL--E 263

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           S + +     I +  S G+A     +  + ++ ++D ALY AK++GRNR   FSD
Sbjct: 264 SPLPVGDQTLI-VRCSIGVASAMSAD-FARLLSQSDLALYHAKRNGRNRAEIFSD 316


>gi|119945951|ref|YP_943631.1| diguanylate cyclase with PAS/PAC sensor [Psychromonas ingrahamii
           37]
 gi|119864555|gb|ABM04032.1| diguanylate cyclase with PAS/PAC sensor [Psychromonas ingrahamii
           37]
          Length = 338

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 80/165 (48%), Gaps = 10/165 (6%)

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S  D L+GL N   F       +S        L+    D+D FK  ND +GH  GD  + 
Sbjct: 172 SETDPLTGLHNRRKFNDIFANNLSIAKRQTRLLNFAIIDVDNFKNYNDTYGHVAGDNALI 231

Query: 157 FLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGP 214
            LS  L   +     ++ RLGGEEF        E  A   AN++R+ +E+  I+ I +  
Sbjct: 232 LLSRFLQKRLLRADDYIFRLGGEEFGLLFYSDDEVSAREFANNIRQGVESLAIDHIQNEN 291

Query: 215 SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
              +TIS GI    HK + ISTI  +AD  +Y AK SGRNR++  
Sbjct: 292 HELLTISLGIVTIKHKTKSISTIYEQADNLMYRAKNSGRNRILSL 336


>gi|21230751|ref|NP_636668.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66769252|ref|YP_244014.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188992403|ref|YP_001904413.1| Putative sensor protein [Xanthomonas campestris pv. campestris str.
           B100]
 gi|21112346|gb|AAM40592.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574584|gb|AAY49994.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167734163|emb|CAP52371.1| Putative sensor protein [Xanthomonas campestris pv. campestris]
          Length = 578

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 98/213 (46%), Gaps = 18/213 (8%)

Query: 48  IFLFYIGLTPFYGLE--YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR 105
           +FL   G  P   LE      E LSL + ++ +   L     SI   L   YNR      
Sbjct: 359 LFLSAPGPAPMPRLEIAEAAAEQLSLALSNLRLRESLRR--QSIRDALTGLYNR------ 410

Query: 106 IDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
              L   L+H   ++     +  LS++  D+D+FKQ ND  GH  GD ++A + + L+  
Sbjct: 411 -RYLEEALSHE--LARCARRDLPLSVLMLDVDHFKQFNDGQGHAGGDLLLAAVGELLLTR 467

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAG 223
                   R GGEEF      +  +EA  +A  +R  I  + + +S G      +T S G
Sbjct: 468 LRAEDVACRYGGEEFTVILPETDGEEAMRVAEQIRGHI--AALAVSDGQRALPRVTASIG 525

Query: 224 IAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +A      E  S +I +AD ALYVAK+ GRNRV
Sbjct: 526 VASFPADGELGSALIQKADAALYVAKRQGRNRV 558


>gi|150391428|ref|YP_001321477.1| diguanylate cyclase [Alkaliphilus metalliredigens QYMF]
 gi|149951290|gb|ABR49818.1| diguanylate cyclase [Alkaliphilus metalliredigens QYMF]
          Length = 746

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 93/170 (54%), Gaps = 13/170 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           N++ +LS +D L+G+ N   F          +   Y+  LS++F DID+FK+ ND +GH 
Sbjct: 573 NKLMKLSELDGLTGIPNRRTFDEYFDFRWTKAQQEYS-PLSLLFIDIDHFKEYNDFYGHI 631

Query: 150 VGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            GD+VI  ++  L   V     FV R GG+EF A    +  Q A  +A  +++ I+N +I
Sbjct: 632 DGDEVIRQVATALEDAVQREGDFVARYGGDEFVAILPNTGSQGALQVAEVIQQNIQNLRI 691

Query: 209 -NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
            +  S  + +IT S GIA       ++   +I  +D+ALY AK+ GR+R+
Sbjct: 692 QHKHSQTANYITASIGIASITPNRMLTKEALIKISDEALYKAKEKGRHRI 741


>gi|254428338|ref|ZP_05042045.1| PAS fold family [Alcanivorax sp. DG881]
 gi|196194507|gb|EDX89466.1| PAS fold family [Alcanivorax sp. DG881]
          Length = 487

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 84/171 (49%), Gaps = 18/171 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
             ++ ++R D L+GL N    + +L           E +S+VF D+DYFK  ND +GH  
Sbjct: 317 QELADMARTDPLTGLNNRLVLMENLRQEFRRCERSREPISVVFMDVDYFKHYNDTYGHME 376

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD  +  ++  L  V      + R GGEEF A    ++ Q A  +A   R  +  + I  
Sbjct: 377 GDVALQAVAAALRPVIRDTDVLARYGGEEFVALLPTANVQAAEGVAERCRHAV--AGIAS 434

Query: 211 SSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S P   +++S G+A      E    +    ++  ADQALY AK++GRNRV
Sbjct: 435 LSAP---VSLSVGVATLLPCGEADEAKDPEALLSAADQALYAAKEAGRNRV 482


>gi|168183066|ref|ZP_02617730.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum Bf]
 gi|237794497|ref|YP_002862049.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum Ba4 str. 657]
 gi|182673756|gb|EDT85717.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum Bf]
 gi|229262531|gb|ACQ53564.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum Ba4 str. 657]
          Length = 419

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 15/180 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           E  I  ++  Q++  D L+ L N ++F+  L             L+I+F D+D FK++ND
Sbjct: 244 ERKIYNDKTKQMAYFDSLTELPNRNSFLKQLEHEIKLSRKKQNLLAIMFLDLDKFKEVND 303

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
           NFGH  GDK++  ++ ++     +   + R GG+EF       + E++   LA D+ ++ 
Sbjct: 304 NFGHCTGDKLLWQVAKRVKKTISSKDLIARFGGDEFTILIRNIAHEKQVEDLARDIIEVF 363

Query: 204 ENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +   I I  G  ++I  S GI+   +  H      +I +AD+A+Y AKK G N+   + D
Sbjct: 364 KEP-ICI-EGIYVNIKTSIGISFFPKDGH--TSQELIKKADKAMYDAKKRGSNKFQIYKD 419


>gi|149204072|ref|ZP_01881040.1| GGDEF domain protein [Roseovarius sp. TM1035]
 gi|149142514|gb|EDM30559.1| GGDEF domain protein [Roseovarius sp. TM1035]
          Length = 244

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 6/200 (3%)

Query: 65  LVENLSLVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           L+ +L+L+  ++T+ ++   L Y  G  L+        +      D L+G+ + ++  + 
Sbjct: 28  LLRDLALLPGALTVVMIAAPLAYAMGQRLRANQRHAQALEHALHHDSLTGVRSRASLRAG 87

Query: 122 L-GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           + G      +++  DID+FK+ ND  GH  GD  +   +  L         V RLGGEEF
Sbjct: 88  VPGDTARPCAVIVADIDHFKRFNDCHGHAAGDLALRHFAQLLRENCRAGDLVARLGGEEF 147

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                 ++   A   AN + + I    + + +GP   +T S G+A     + +   + RA
Sbjct: 148 VILMPMTNPANALRAANRMARRIRQGPVFLDTGPQT-LTASFGVAALLPGDTLDAGLQRA 206

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D+ALY AK +GR+R  C  D
Sbjct: 207 DRALYRAKGAGRDR-ACLHD 225


>gi|186474171|ref|YP_001861513.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia phymatum STM815]
 gi|184196503|gb|ACC74467.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia phymatum STM815]
          Length = 372

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 11/186 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L++ D L+GL N       L +          ++S++  D+D FK  N
Sbjct: 182 QQLLEANLELRKLTQSDGLTGLSNRRYLDEYLNAEWRRGMRAQSEVSLLMLDVDNFKPYN 241

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+V+  ++  +    G P     R GGEEFA    G++     +LA  +R  
Sbjct: 242 DTYGHVAGDEVLKQIASTVEGCLGRPGDLAARFGGEEFAVVLPGTAAGGTRLLAEKIRLE 301

Query: 203 IENSQI-NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +E  +I +  S    ++T+S G A         ++T+I  AD ALY AK+ G+NRV    
Sbjct: 302 VEALRIPHAGSSSGNYVTVSVGCATLVPAPDAQMTTLIETADLALYRAKRDGKNRVAAME 361

Query: 260 DIENNT 265
              + T
Sbjct: 362 GGRSGT 367


>gi|27367337|ref|NP_762864.1| GGDEF domain-containing protein [Vibrio vulnificus CMCP6]
 gi|27358906|gb|AAO07854.1| FOG: GGDEF domain protein [Vibrio vulnificus CMCP6]
          Length = 607

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 9/164 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            +++ L++ D L+G+LN  A I +       N+K+ +   D+D+FK IND +GH  GDKV
Sbjct: 433 QQLTVLAQQDSLTGVLNRRALIEAANIQRRVNDKIGVCMMDLDHFKTINDEYGHAAGDKV 492

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR---KIIENSQINIS 211
           +      +          GR+GGEEF      ++  +  ++A  +R   +++  S + + 
Sbjct: 493 LKAFCQLVSQEIRQQDLFGRVGGEEFCLVLPDANLAQTLLIAERIRLSAEMVLGSVLEL- 551

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G  + +T+S G A           ++ AD+ALY AK  GRN+V
Sbjct: 552 -GDDMKVTVSIG-ATLWQCSNFERALFIADKALYRAKHEGRNQV 593


>gi|51244166|ref|YP_064050.1| sensory transduction system regulatory protein [Desulfotalea
           psychrophila LSv54]
 gi|50875203|emb|CAG35043.1| probable sensory transduction system regulatory protein
           [Desulfotalea psychrophila LSv54]
          Length = 449

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 94/184 (51%), Gaps = 12/184 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQIND 144
           EL  +  ++  +S  D L+G+ N   F + +      +  EK  ++++  DIDYFK  ND
Sbjct: 265 ELTEANQKLEHISLTDGLTGIANRRHFDNLIAKEWSRAIREKTPITLIMIDIDYFKLFND 324

Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GHP GD  +  ++  L   +  +  FV R GGEEFAA    +    A ++A  +R  I
Sbjct: 325 LYGHPEGDICLKTVAMALNAEMRRSTDFVARYGGEEFAAILPNTGGPGALVMAEKMRASI 384

Query: 204 ENSQI-NISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFS- 259
              +I +  S  + ++TIS G      K+    S  I +AD+ALY AK  GRN+   FS 
Sbjct: 385 AKLEIEHKDSEINNYLTISLGAISVVPKKGSDFSHFIEQADKALYTAKTEGRNQARAFSP 444

Query: 260 DIEN 263
           D EN
Sbjct: 445 DGEN 448


>gi|332992498|gb|AEF02553.1| diguanylate cyclase [Alteromonas sp. SN2]
          Length = 339

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 10/169 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           +  R+ +++ +D L+GL N             +L    + +S+V  D+D+FK++ND +GH
Sbjct: 171 TVKRLQEMASLDPLTGLNNRLLLGSIFDMLCETLPEKQKSVSMVLVDLDHFKKVNDRYGH 230

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD V+  +S  +  +        R GGEEF       +  +A  +A  LR  +E++  
Sbjct: 231 GVGDAVLVDVSRIINSMRRRNDCAFRFGGEEFCLLVPDVTPSQAHSIAERLRHSVEHTL- 289

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
             + G    +T+S G+A         + IY+ AD+ LY AK+ GRN+ V
Sbjct: 290 -SAEGFDAKMTVSIGVARWPENGDALSQIYKVADERLYKAKEQGRNQTV 337


>gi|296270516|ref|YP_003653148.1| diguanylate cyclase [Thermobispora bispora DSM 43833]
 gi|296093303|gb|ADG89255.1| diguanylate cyclase [Thermobispora bispora DSM 43833]
          Length = 484

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 9/167 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           + ++   +R D  +GLLN SA+       I       + L+++  DID+FK++ND +GH 
Sbjct: 297 HAQLQAAARTDPKTGLLNASAWQREADTEIVRAQRAGQTLAVILVDIDHFKKVNDTYGHL 356

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+V+  ++  L         VGR GGEEF     G+   EA  +A  LR  I    + 
Sbjct: 357 VGDQVLIQMAQVLRSQVREYDVVGRFGGEEFVVLLPGADLDEARRVAERLRTQIGRMVVT 416

Query: 210 ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
                ++ +T+SAGIA    H + +  ++  AD ALY AK+ GR+R+
Sbjct: 417 AEQA-TVTVTVSAGIAVLNLHGDDLLDLLAAADLALYRAKELGRDRI 462


>gi|251773123|gb|EES53677.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Leptospirillum ferrodiazotrophum]
          Length = 1071

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 99/199 (49%), Gaps = 28/199 (14%)

Query: 77  TISLLLGYISGSIL--KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----L 129
           T+  LLG I+  I    E      R+  L+ ID L+ L N +AF+  LG          L
Sbjct: 517 TLVGLLGGIAQDISFSLEFLDRQERLKVLASIDPLTDLPNRTAFVGELGRLTSSQPDLAL 576

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGS 187
           S+   DID FK  ND FGH  GD+++  ++ ++  +     F+ R+GG+EF    ++ GS
Sbjct: 577 SVGILDIDGFKNWNDAFGHIEGDRLLQSMAREIPGILPKGAFLARMGGDEFGICLSSPGS 636

Query: 188 SEQEAAILANDLRKIIENSQ------INISSGPSIHITISAGIA--ERCHKEPISTIIYR 239
                     D R++ E SQ      + +  G ++ +T+S G A      K P + ++ R
Sbjct: 637 I---------DRRRVEEISQKILDLGLRLDGGHNL-VTVSLGWALFPDDAKTP-AELLAR 685

Query: 240 ADQALYVAKKSGRNRVVCF 258
           AD++L+ AK SGRNR   F
Sbjct: 686 ADESLFAAKSSGRNRSTLF 704


>gi|307150378|ref|YP_003885762.1| diguanylate cyclase [Cyanothece sp. PCC 7822]
 gi|306980606|gb|ADN12487.1| diguanylate cyclase [Cyanothece sp. PCC 7822]
          Length = 282

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 12/175 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           +L EL   Y R   L+R D L+G+ N   F+  L         +   L++ + D+D FK 
Sbjct: 103 LLWELKKVYQRERHLARTDGLTGITNRWFFLELLSWEVERFRRHQRPLTLAYLDVDNFKT 162

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND++GH VGD+++  LS  L     +   V RLGG+EFA     +  + A ++   L  
Sbjct: 163 VNDSYGHSVGDQLLRSLSHTLKTNIRSVDIVARLGGDEFALLLPETDYRSAQVVVTRL-- 220

Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
             ++  +   +  S  +  S G+       E I  +I   D  +Y  K SG+NR+
Sbjct: 221 --QDKLLAAMAVKSFPVGFSIGVVTFLSLPESIDEMIELVDHLMYDVKNSGKNRL 273


>gi|186893921|ref|YP_001871033.1| diguanylate cyclase [Yersinia pseudotuberculosis PB1/+]
 gi|186696947|gb|ACC87576.1| diguanylate cyclase [Yersinia pseudotuberculosis PB1/+]
          Length = 384

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 117/242 (48%), Gaps = 21/242 (8%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLL---LGYI-- 85
            F+IF  + I +++ FL +   T    +  IL++   N+  +I +I + L+   L ++  
Sbjct: 130 LFTIFFISTIALSDNFLAFCLHTAPSAITVILLDDFHNIFRIIFTIMLPLIGFSLHHLML 189

Query: 86  ------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFD 135
                 +  ++  L     + S LS ID L+ L N     S L +   +      ++  D
Sbjct: 190 RRTDNFTRKLVDHLSNEREKFSDLSMIDPLTSLYNRRGLESKLETLLSQSPGNHYVLLLD 249

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK  NDN+GH +GD+ +  +S  +     +   V R GGEEF       SE+ A+ L
Sbjct: 250 IDHFKAYNDNYGHTMGDQALVRISAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYASQL 309

Query: 196 ANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           A  +R+ +    I    +   S  +T+SAGI+       ++  +  AD+ALY AK++GRN
Sbjct: 310 AERVRQRVLGLDIPHVFNHKVSTTVTLSAGISP-LQAYDLAASLKAADEALYRAKRNGRN 368

Query: 254 RV 255
            +
Sbjct: 369 NI 370


>gi|156742439|ref|YP_001432568.1| diguanylate cyclase with GAF sensor [Roseiflexus castenholzii DSM
           13941]
 gi|156233767|gb|ABU58550.1| diguanylate cyclase with GAF sensor [Roseiflexus castenholzii DSM
           13941]
          Length = 756

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 15/182 (8%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHP 149
           +  +  L+  D L G+ N   F S+     E+       L+I+  D+D FKQIND++GHP
Sbjct: 552 FAEVQHLAITDPLMGIYNRRYFFSAAAREFERARRHRHTLAILIADLDNFKQINDHYGHP 611

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQI 208
           +GD+V+  +S+       +   + R GGEE       +       +   LR +++E   I
Sbjct: 612 IGDQVLQAVSNTFRRELRSIDLLARYGGEEIIVLLPETDCSGVIRVVERLRSRLLE--AI 669

Query: 209 NISSGPSIHITIS--AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD--IENN 264
               G +IHIT S  A +++R +   + T+I  AD+AL  AK+ G++R+V + D    N 
Sbjct: 670 ATERG-AIHITASFGAAVSQRINAPDVETLIGSADRALLRAKQQGKDRLVIWCDACAANG 728

Query: 265 TC 266
            C
Sbjct: 729 VC 730


>gi|320333964|ref|YP_004170675.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
 gi|319755253|gb|ADV67010.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
          Length = 615

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 1/129 (0%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +S++  DID+FK+ ND FGH  GD  +  ++D +   F     V R GGEEF    L + 
Sbjct: 477 VSVLAVDIDHFKRFNDTFGHDGGDATLKAVADAMTAHFRAEDVVCRYGGEEFMVVLLDTP 536

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVA 247
             +A   A  LR+ +    +  +      I++S G+A     +     ++ +AD ALY A
Sbjct: 537 HADALARAEGLRRTVRELHVTHAGASLGTISVSVGVATSERGQVTGHQLVAQADAALYQA 596

Query: 248 KKSGRNRVV 256
           K++GR+RVV
Sbjct: 597 KRAGRDRVV 605


>gi|309789857|ref|ZP_07684436.1| response regulator receiver modulated diguanylate cyclase
           [Oscillochloris trichoides DG6]
 gi|308228161|gb|EFO81810.1| response regulator receiver modulated diguanylate cyclase
           [Oscillochloris trichoides DG6]
          Length = 951

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 9/163 (5%)

Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           SQ+ R D L+GL NHS         ++       +LSIV  DID+ K+IN+ +GH  GD+
Sbjct: 384 SQMLR-DSLTGLFNHSVTEDLLVREVARAQRKKRQLSIVMLDIDHLKEINETYGHAAGDR 442

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  L+  L         +GR GG+EF      +    A  + + +R+     Q + +  
Sbjct: 443 VLKSLARMLQQRLRISDLIGRFGGDEFVVIMPDTDGAVALRVIDSIRERFVMVQ-HRAGV 501

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              ++T S G+A       ++T+   AD ALY AK  GRN++V
Sbjct: 502 AEFNVTFSGGVATLQASGDVTTLNESADIALYQAKHHGRNQLV 544


>gi|167623607|ref|YP_001673901.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167353629|gb|ABZ76242.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 613

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 100/203 (49%), Gaps = 18/203 (8%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125
           + IISI++ +   Y   +  K L  S   + + S +D L+GL N   F+  L        
Sbjct: 404 VAIISISLLIKKRYGLENDNKNLQSSNRELYKQSNLDSLTGLYNRRYFLDYLAQQGQLPT 463

Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF--- 180
             N ++ +   DID+FK++ND +GH VGD+V+  +   +         + R GGEEF   
Sbjct: 464 LQNMRMCLAIIDIDHFKRVNDTYGHDVGDEVLVRVGQLIQSNIREDDLLIRWGGEEFILL 523

Query: 181 AAAALGSSEQEAAILAND---LRKIIENSQINISSGPSIHITISAGIAE----RCHKEPI 233
            +    S  Q    L+N    +R+ + ++ I +     +H+T+S G+ +    R   E  
Sbjct: 524 LSWPDVSCPQSVRALSNHFERIRQAVADAIIEVQE-QQLHLTVSVGVGQPLDARTLVESW 582

Query: 234 STIIYRADQALYVAKKSGRNRVV 256
             ++  AD+ALY+AK+ GRN VV
Sbjct: 583 QFVLDCADKALYLAKRQGRNCVV 605


>gi|162419032|ref|YP_001605417.1| diguanylate cyclase [Yersinia pestis Angola]
 gi|162351847|gb|ABX85795.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis Angola]
          Length = 384

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 117/242 (48%), Gaps = 21/242 (8%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLL---LGYI-- 85
            F+IF  + I +++ FL +   T    +  IL++   N+  +I +I + L+   L ++  
Sbjct: 130 LFTIFFISTIALSDNFLAFCLHTAPSAITVILLDDFHNIFRIIFTIMLPLIGFSLHHLML 189

Query: 86  ------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFD 135
                 +  ++  L     + S LS ID L+ L N     S L +   +      ++  D
Sbjct: 190 RRTDNFTRKLVDHLSNEREKFSDLSMIDPLTSLYNRRGLESKLETLLSQSPGNHYVLLLD 249

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK  NDN+GH +GD+ +  +S  +     +   V R GGEEF       SE+ A+ L
Sbjct: 250 IDHFKAYNDNYGHTMGDQALVRISAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYASQL 309

Query: 196 ANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           A  +R+ +    I    +   S  +T+SAGI+       ++  +  AD+ALY AK++GRN
Sbjct: 310 AERVRQRVLGLDIPHVFNHKVSTTVTLSAGISP-LQAYDLAASLKAADEALYRAKRNGRN 368

Query: 254 RV 255
            +
Sbjct: 369 NI 370


>gi|153950730|ref|YP_001402464.1| diguanylate cyclase [Yersinia pseudotuberculosis IP 31758]
 gi|152962225|gb|ABS49686.1| diguanylate cyclase (GGDEF) domain protein [Yersinia
           pseudotuberculosis IP 31758]
          Length = 384

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 118/247 (47%), Gaps = 21/247 (8%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLL---LGYI-- 85
            F+IF  + I +++ FL +   T    +  IL++   N+  +I +I + L+   L ++  
Sbjct: 130 LFTIFFISTIALSDNFLAFCLHTAPSAITVILLDDFHNIFRIIFTIMLPLIGFSLHHLML 189

Query: 86  ------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFD 135
                 +  ++  L     + S LS ID L+ L N     S L +   +      ++  D
Sbjct: 190 RRTDNFTRKLVDHLSNEREKFSDLSMIDPLTSLYNRRGLESKLETLLSQSPGNHYVLLLD 249

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK  NDN+GH +GD+ +  +S  +     +   V R GGEEF       SE+ A+ L
Sbjct: 250 IDHFKAYNDNYGHTMGDQALVRISAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYASQL 309

Query: 196 ANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           A  +R+ +    I    +   S  +T+SAGI+       ++  +  AD+ALY AK++GRN
Sbjct: 310 AERVRQRVLGLDIPHVFNHKVSTTVTLSAGISP-LQAYDLAASLKAADEALYRAKRNGRN 368

Query: 254 RVVCFSD 260
            +    D
Sbjct: 369 NIEFAKD 375


>gi|45443488|ref|NP_995027.1| HmsT protein [Yersinia pestis biovar Microtus str. 91001]
 gi|229836995|ref|ZP_04457160.1| predicted diguanylate cyclase [Yersinia pestis Pestoides A]
 gi|45438357|gb|AAS63904.1| HmsT protein [Yersinia pestis biovar Microtus str. 91001]
 gi|229705938|gb|EEO91947.1| predicted  diguanylate cyclase [Yersinia pestis Pestoides A]
          Length = 390

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 118/247 (47%), Gaps = 21/247 (8%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLL---LGYI-- 85
            F+IF  + I +++ FL +   T    +  IL++   N+  +I +I + L+   L ++  
Sbjct: 136 LFTIFFISTIALSDNFLAFCLHTAPSAITVILLDDFHNIFRIIFTIMLPLIGFSLHHLML 195

Query: 86  ------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFD 135
                 +  ++  L     + S LS ID L+ L N     S L +   +      ++  D
Sbjct: 196 RRTDNFTRKLVDHLSNEREKFSDLSMIDPLTSLYNRRGLESKLETLLSQSPGNHYVLLLD 255

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK  NDN+GH +GD+ +  +S  +     +   V R GGEEF       SE+ A+ L
Sbjct: 256 IDHFKAYNDNYGHTMGDQALVRISAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYASQL 315

Query: 196 ANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           A  +R+ +    I    +   S  +T+SAGI+       ++  +  AD+ALY AK++GRN
Sbjct: 316 AERVRQRVLGLDIPHVFNHKVSTTVTLSAGISP-LQAYDLAASLKAADEALYRAKRNGRN 374

Query: 254 RVVCFSD 260
            +    D
Sbjct: 375 NIEFAKD 381


>gi|42784524|ref|NP_981771.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987]
 gi|42740456|gb|AAS44379.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987]
          Length = 892

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 11/176 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 453 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQTSASDVAVMFLDLDRFKKINDR 512

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIE 204
            GH VGD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  I+ 
Sbjct: 513 LGHDVGDLLLIEVAKRLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL- 571

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           N    I  G  + IT S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 572 NKPFFI-QGEELSITPSIGIAMYPDYGTDVTALMKNADMAMYRAKANGKNRFVFFS 626


>gi|37677089|ref|NP_937485.1| hypothetical protein VVA1429 [Vibrio vulnificus YJ016]
 gi|37201634|dbj|BAC97455.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 607

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 9/164 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            +++ L++ D L+G+LN  A I +       N+K+ +   D+D+FK IND +GH  GDKV
Sbjct: 433 QQLTVLAQQDSLTGVLNRRALIEAANIQRRVNDKIGVCMMDLDHFKTINDEYGHAAGDKV 492

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR---KIIENSQINIS 211
           +      +          GR+GGEEF      ++  +  ++A  +R   +++  S + + 
Sbjct: 493 LKAFCQLVSQEIRQQDLFGRVGGEEFCLVLPDANLAQTLLIAERIRLSAEMVLGSVLEL- 551

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G  + +T+S G A           ++ AD+ALY AK  GRN+V
Sbjct: 552 -GDDMKVTVSIG-ATLWQCSNFERALFIADKALYRAKHEGRNQV 593


>gi|323499816|ref|ZP_08104775.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
 gi|323315057|gb|EGA68109.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
          Length = 331

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 10/152 (6%)

Query: 107 DCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+G LN  A +     +L + +  ++  F DID FKQIND +GH VGDKV+A +    
Sbjct: 183 DSLTGCLNRRALLHRASDALNADHTYIACFFADIDKFKQINDRYGHEVGDKVLASVGHAF 242

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             VF  P   GR GG+EF A A    E    I    L+  +E +   ++    ++I +S 
Sbjct: 243 KQVFHQPGLCGRYGGDEFVAFAFSEDE----IQLEQLKSQVEQALALLAPVEGLNIRVSI 298

Query: 223 GIAERCHKE--PISTIIYRADQALYVAKKSGR 252
           G + R   E   +  +I  AD  +Y  K + R
Sbjct: 299 GSSVRKLSELCSLQRLIQLADHQMYQVKHANR 330


>gi|320159182|ref|YP_004191560.1| GGDEF domain-containing protein [Vibrio vulnificus MO6-24/O]
 gi|319934494|gb|ADV89357.1| GGDEF domain [Vibrio vulnificus MO6-24/O]
          Length = 607

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 9/164 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            +++ L++ D L+G+LN  A I +       N+K+ +   D+D+FK IND +GH  GDKV
Sbjct: 433 QQLTVLAQQDSLTGVLNRRALIEAANIQRRVNDKIGVCMMDLDHFKTINDEYGHAAGDKV 492

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR---KIIENSQINIS 211
           +      +          GR+GGEEF      ++  +  ++A  +R   +++  S + + 
Sbjct: 493 LKAFCQLVSQEIRQQDLFGRVGGEEFCLVLPDANLAQTLLIAERIRLSAEMVLGSVLEL- 551

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G  + +T+S G A           ++ AD+ALY AK  GRN+V
Sbjct: 552 -GDDMKVTVSIG-ATLWQCSNFERALFIADKALYRAKHEGRNQV 593


>gi|229182956|ref|ZP_04310189.1| Sensory box/GGDEF [Bacillus cereus BGSC 6E1]
 gi|228600580|gb|EEK58167.1| Sensory box/GGDEF [Bacillus cereus BGSC 6E1]
          Length = 569

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++        +  +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQAP- 253

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306


>gi|221633880|ref|YP_002523106.1| developmental regulator MorA [Thermomicrobium roseum DSM 5159]
 gi|221156526|gb|ACM05653.1| developmental regulator MorA [Thermomicrobium roseum DSM 5159]
          Length = 897

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 87/168 (51%), Gaps = 15/168 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----------IVFFDIDYFKQINDNFGH 148
           R++ L+R D L+G+ N  A + +L    E+L+          ++  D+D+FK++ND  GH
Sbjct: 481 RLAYLARHDTLTGIANRHALLETL---QERLARAVRSGRSGALLLLDLDHFKEVNDRLGH 537

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+  ++++L+    +   V R+GG+EFAA     + + A  +   L  +I    +
Sbjct: 538 AAGDAVLRAVANRLIGTLRSDDLVARVGGDEFAALLHPVTREGAECVGRRLLDVIGQIMV 597

Query: 209 NISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
            +     I +  S GIA    H   +  ++  AD+ALY AK  GR+R+
Sbjct: 598 PLPD-RVIRLRASCGIALFPEHGTTVEELLIAADRALYQAKYRGRDRL 644


>gi|170746830|ref|YP_001753090.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
 gi|170653352|gb|ACB22407.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
          Length = 801

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/165 (35%), Positives = 92/165 (55%), Gaps = 17/165 (10%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFF-DIDYFKQINDNFGHPVG 151
           RI+ L+  D L+GL N S F  +LG+        E+ S +F+ D+D FK +ND+ GH VG
Sbjct: 346 RIAFLAGHDSLTGLPNRSGFQDALGTLCRAVRTAERPSALFYLDLDGFKAVNDSRGHLVG 405

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LG--SSEQEAAILANDLRKIIENSQ 207
           D+++  ++ +L+ + G P  + RLGG+EFA     LG  ++E  AA +  +LR+  +  +
Sbjct: 406 DRLLRAVTARLLAI-GEPHSLFRLGGDEFAMVVRDLGRPAAEALAARVVAELRRPFQIDE 464

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             +  G S+ I      A     EP S ++ RAD ALY AK  G+
Sbjct: 465 ARLEVGVSVGIAYMPDDA----VEPAS-LLMRADLALYAAKADGK 504


>gi|157736733|ref|YP_001489416.1| GGDEF domain-containing protein [Arcobacter butzleri RM4018]
 gi|157698587|gb|ABV66747.1| GGDEF domain protein [Arcobacter butzleri RM4018]
          Length = 619

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 106 IDCLSGLLNH---SAFISSLGSYNE----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+GL N      FI     +      K +I+F DIDYFK IND +GH  GD ++  L
Sbjct: 447 VDGLTGLYNRRYLDEFIEKKLPHESQDGSKFAIMFLDIDYFKMINDTYGHDAGDAILQKL 506

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           SD +        F+ R GGEEF       +E  A  LA  + +       N  +G +   
Sbjct: 507 SDTMKASISENEFIVRFGGEEFLIIMKNPTESSARELATKINQEFAKLVFNY-NGQAFSK 565

Query: 219 TISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           T+S G +      + I   I  AD +LY AK++GRN++V F 
Sbjct: 566 TVSIGYSFFPDDADQIWKCIKYADISLYEAKETGRNKIVRFQ 607


>gi|145600462|ref|YP_001164538.1| HmsT protein [Yersinia pestis Pestoides F]
 gi|145212158|gb|ABP41565.1| HmsT protein [Yersinia pestis Pestoides F]
          Length = 390

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 118/247 (47%), Gaps = 21/247 (8%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLL---LGYI-- 85
            F+IF  + I +++ FL +   T    +  IL++   N+  +I +I + L+   L ++  
Sbjct: 136 LFTIFFISTIALSDNFLAFCLHTAPSAITVILLDDFHNIFRIIFTIMLPLIGFSLHHLML 195

Query: 86  ------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFD 135
                 +  ++  L     + S LS ID L+ L N     S L +   +      ++  D
Sbjct: 196 RRTDNFTRKLVDHLSNEREKFSDLSMIDPLTSLYNRRGLESKLETLLSQSPGNHYVLLLD 255

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK  NDN+GH +GD+ +  +S  +     +   V R GGEEF       SE+ A+ L
Sbjct: 256 IDHFKAYNDNYGHTMGDQALVRISAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYASQL 315

Query: 196 ANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           A  +R+ +    I    +   S  +T+SAGI+       ++  +  AD+ALY AK++GRN
Sbjct: 316 AERVRQRVLGLDIPHVFNHKVSTTVTLSAGISP-LQAYDLAASLKAADEALYRAKRNGRN 374

Query: 254 RVVCFSD 260
            +    D
Sbjct: 375 NIEFAKD 381


>gi|83590315|ref|YP_430324.1| diguanylate cyclase [Moorella thermoacetica ATCC 39073]
 gi|83573229|gb|ABC19781.1| diguanylate cyclase (GGDEF domain) [Moorella thermoacetica ATCC
           39073]
          Length = 439

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 78/168 (46%), Gaps = 9/168 (5%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID  +GL N+          I+    Y    +I   DID FK  ND  GH  GDK +  +
Sbjct: 264 IDAKTGLYNYQHMMHLLEKEIARARRYQRTFTIAMLDIDDFKIYNDTHGHHQGDKALQKI 323

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217
           +  +           R GGEEF      +S  EA+++A  +R+ I N+ I N+  GP   
Sbjct: 324 AALIKANIREVDIAARYGGEEFVIIMPETSALEASVVAERVRRAIMNAGIANVGCGPDRL 383

Query: 218 ITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +T+S G+    H    +  +I  AD ALY AK+ G+N V  +S  +  
Sbjct: 384 LTVSIGLGTYPHDATTAGKLIDAADSALYEAKRWGKNVVRVYSKTDRR 431


>gi|87119537|ref|ZP_01075434.1| diguanylate cyclase (GGDEF domain) [Marinomonas sp. MED121]
 gi|86165013|gb|EAQ66281.1| diguanylate cyclase (GGDEF domain) [Marinomonas sp. MED121]
          Length = 368

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 12/163 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD---KVIAFL 158
           +++ +D L+ L    A    L   ++   I   D+D+FK+ ND +GH +GD   K +A+ 
Sbjct: 208 KMAYVDELTQLPGRRALNERLLGLSKNYVIAMLDVDHFKKFNDTYGHDMGDLVLKSVAYN 267

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-----SSG 213
            D+  V  G   F  R GGEEFA       + E       +R+ IE  ++ +      + 
Sbjct: 268 MDK--VASGGKAF--RYGGEEFAVVFANRKKDEVLSALEQVRESIEAEKVAVYECKKEAY 323

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             + +TIS G A    +     +I +ADQ LY AKK GRN VV
Sbjct: 324 KDVSVTISIGAALSNSERDAQEVIKQADQLLYKAKKKGRNCVV 366


>gi|152965578|ref|YP_001361362.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151360095|gb|ABS03098.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 537

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 78/160 (48%), Gaps = 6/160 (3%)

Query: 107 DCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ L N   F   L        ++  ++++ D+D FK +ND  GH VGD V+  +S +
Sbjct: 97  DPLTDLGNRQLFTDRLQHALARRGSKACAVLYLDLDGFKTVNDTHGHGVGDTVLVEVSHR 156

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
           L         V R GG+EFA      S E  A+ +A+ +   I N  I    G  + IT 
Sbjct: 157 LRAAVRPEDTVARFGGDEFAVLCEDLSDELNASRIADRVVSSIANHPIEFGDGRKLTITP 216

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           S GIA    +   S ++ RAD ALY AK+SG+ R   F +
Sbjct: 217 SVGIALARDEADASKLLRRADAALYRAKESGKARSELFDE 256


>gi|323438902|gb|EGA96637.1| GGDEF domain-containing protein [Staphylococcus aureus O11]
          Length = 327

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 9/168 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
           NR     + D L+GL N   F   L   + K       ++++  DID FK +ND + H  
Sbjct: 153 NRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHKS 212

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  +S  L         + R GGEEF+      S  ++  LA ++R  +E S  ++
Sbjct: 213 GDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFHL 272

Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
            +   I +++S G+      +P S   +   AD  ++VAK  GRN+V+
Sbjct: 273 PNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVM 320


>gi|322807681|emb|CBZ05256.1| phytochrome-like protein; Cph2 [Clostridium botulinum H04402 065]
          Length = 437

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 12/173 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQIND 144
           E + + N+I +LS I  L+  LN  +F+  L         N++ +SIVF D+DYFK+ ND
Sbjct: 256 ENYSANNKIKKLS-ICSLTYALNRGSFMEKLKDEFDDSKKNKRHISIVFIDVDYFKEYND 314

Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           N+GH  GDKV+  +   ++ V       VGR GG+EF          E   +A ++ K I
Sbjct: 315 NYGHIEGDKVLMKIGKSIINVAKKYSGVVGRYGGDEFIVLLNEVKTSELEFIAVEISKEI 374

Query: 204 ENSQINIS-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
              +I    S  S + T+S G+A    K  E I  +I  AD+ALY  K++GR+
Sbjct: 375 NKLKIKREYSHISKYQTVSIGVASIIPKEEEKIEDLINYADKALYKCKENGRD 427


>gi|269962919|ref|ZP_06177257.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832281|gb|EEZ86402.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 115

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 66/111 (59%), Gaps = 3/111 (2%)

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND +GH VGD+VI+ ++D +  VF    ++ R GG+EF A     SE ++ +LA  L
Sbjct: 6   KRINDKYGHHVGDEVISIIADAMKKVFRATDYLIRTGGDEFIAILPDCSESKSLMLAKKL 65

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           R +++ +++       I +++S GIA     E ++ +I RAD+ LY  K+ 
Sbjct: 66  RSVVKENRLK---SLDIDVSVSTGIAMSTEHETLNDVIMRADEDLYECKRK 113


>gi|172038628|ref|YP_001805129.1| hypothetical protein cce_3715 [Cyanothece sp. ATCC 51142]
 gi|171700082|gb|ACB53063.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 607

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 18/167 (10%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N           I+    Y  ++ I+  DID+FKQINDN+ H +GD V+    
Sbjct: 445 DSLTGLFNRRYLYEFLKKEIAKAQRYETEIGIILLDIDHFKQINDNYSHGLGDVVLEEFG 504

Query: 160 DQLVVVFGTPMFVGRLGGEE----FAAAALGSSEQEAAILANDLRKI-IENSQINISSGP 214
           + L           R GGEE    F  A+L ++ Q A  L   ++++     Q +++S  
Sbjct: 505 EFLRDNIRESDIACRYGGEEFILIFPHASLDNTYQRAEALRRKIKRLHFRYQQHHLNS-- 562

Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              +T+S G+A    H      +++ AD ALY AK  GRNR + + +
Sbjct: 563 ---VTVSVGVANYPQHGLTGEEVVHHADLALYAAKDQGRNRTIVYGE 606


>gi|46202942|ref|ZP_00052341.2| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 156

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 67/135 (49%), Gaps = 9/135 (6%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS+ F D+D FK IND +GH  GD  +   S  L  V      + R GGEEF A    + 
Sbjct: 16  LSLAFVDLDNFKSINDKYGHEEGDNALRIASTSLRKVLRRGDILIRWGGEEFIAVMPNTD 75

Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHK--EPISTIIYRADQALY 245
              AAI    LR         +   P  + +T S G+AER     E  + ++ RADQ +Y
Sbjct: 76  PPGAAIAIARLR------SAGLGMRPDGLPLTASVGVAERITDGIETWNELVERADQRMY 129

Query: 246 VAKKSGRNRVVCFSD 260
            AK+SG+NRV+   D
Sbjct: 130 AAKQSGKNRVIGCGD 144


>gi|317486914|ref|ZP_07945724.1| GGDEF domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316921789|gb|EFV43065.1| GGDEF domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 874

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 65/213 (30%), Positives = 101/213 (47%), Gaps = 16/213 (7%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFIS-----YNRISQL---SRIDCLSGL 112
           LEY  +   + + +S +I+LL    SG +L   +++       R ++L   S  D L+ L
Sbjct: 660 LEYRTLRGDTFIWVSASINLLKDPASGDLLAFGYLTDITERRQREAELVYKSERDFLTKL 719

Query: 113 LNHSAFISSLGSYNEKLS----IVFF--DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
            N SA       Y    S    + FF  D+D FK +ND  GH  GD ++  ++ +L   F
Sbjct: 720 YNRSAVEKRFSEYAASASGDGLLAFFSMDLDGFKNVNDTLGHLEGDTLLQLVARELESCF 779

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                VGRLGG+EF A   G S +E     A +L   I + ++       + ++I   IA
Sbjct: 780 RVDDIVGRLGGDEFIALMYGVSTREIIERKAEELCARIRSIRMAHPRYSGVSVSIGVAIA 839

Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              H +    +  +AD ALY AK+ GR+R V +
Sbjct: 840 PE-HGDSFEELYAKADVALYHAKQGGRDRFVIY 871


>gi|290513224|ref|ZP_06552585.1| diguanylate cyclase [Klebsiella sp. 1_1_55]
 gi|289774321|gb|EFD82328.1| diguanylate cyclase [Klebsiella sp. 1_1_55]
          Length = 510

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 86/160 (53%), Gaps = 18/160 (11%)

Query: 106 IDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           ID L+G  N  AF   I++L + ++  ++   DID FK IND +GH  GD V+  ++ + 
Sbjct: 358 IDALTGCKNRRAFDSDIAALMNDHQPFALALVDIDNFKSINDTWGHLNGDIVLRNVAREG 417

Query: 163 VVVFGTPMFVG--RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP----SI 216
           + V   P+ +   R GGEEFA           A   ++ R ++E  ++N+         +
Sbjct: 418 LQVL-QPLEISLYRYGGEEFAVVF-------PAEHIDNARTLLETWRVNVERRTWREDGL 469

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +T SAG+ E  + EP+  ++   D+ALY AK+ G+NR++
Sbjct: 470 TVTFSAGLGE-WNMEPLDKLVVSVDEALYKAKQQGKNRIL 508


>gi|206968481|ref|ZP_03229437.1| sensory box/GGDEF family protein [Bacillus cereus AH1134]
 gi|206737401|gb|EDZ54548.1| sensory box/GGDEF family protein [Bacillus cereus AH1134]
          Length = 567

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ +   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDDMRQLATSVLSCFQAP- 251

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             I  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 252 -FILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304


>gi|254422258|ref|ZP_05035976.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196189747|gb|EDX84711.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 547

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 89/174 (51%), Gaps = 22/174 (12%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + QL+++D L+ + N  +F        S++ S    LS++  DIDYFK+ ND +GH  GD
Sbjct: 374 LEQLAKMDGLTQVANRRSFDKYMERVWSNVDSTQSSLSLILCDIDYFKRFNDTYGHQAGD 433

Query: 153 ---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
              + +A   +Q   V      V R GGEEFA     ++   A  +A D+ + +   Q+N
Sbjct: 434 LCLRQVAKAIEQ--AVKRNTDLVARYGGEEFAVVLPDTNVSGAKRVAEDICETVR--QLN 489

Query: 210 I---SSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           I   +S  S  +T+S GIA      K  +  ++  ADQ LY AK SGR+   CF
Sbjct: 490 IMHSASEVSDRVTLSLGIASISSPQKIELDQLVAAADQGLYDAKSSGRD---CF 540


>gi|148975502|ref|ZP_01812373.1| PAS:GGDEF [Vibrionales bacterium SWAT-3]
 gi|145964930|gb|EDK30181.1| PAS:GGDEF [Vibrionales bacterium SWAT-3]
          Length = 822

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 18/170 (10%)

Query: 103 LSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N           I     +N    +++ DID FK IND+ GH  GD ++
Sbjct: 389 LAHHDPLTGLANRLLATKKLDEEIKRSREHNSFFLLLYLDIDEFKTINDSLGHGQGDNLL 448

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAA----ALGSSEQEAAILANDLRKIIENSQINIS 211
             +S+ L  + G   FV R+GG+EF       +L   EQ A  L   LRK         +
Sbjct: 449 INVSNILTTLVGNNGFVARMGGDEFMVVFSDISLSEGEQLADRLNQSLRKPY------YA 502

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              SI +  S G+ E   H     T+I  AD A+Y AK++GR++   ++D
Sbjct: 503 DNNSIFVAASIGVCEYPTHGSSGETLIRNADTAMYHAKRNGRDQYRVYAD 552


>gi|78777534|ref|YP_393849.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78498074|gb|ABB44614.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM
           1251]
          Length = 439

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 78/174 (44%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL  +   + +L   D L+G+ N           +     Y    S++  DID FK +N
Sbjct: 267 EELSEAKKELERLYITDQLTGVYNRVKIDEIIDIELKKQKRYGYVCSVIMIDIDLFKLVN 326

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD  +   S  L         VGR GGEEF   +  + +  A  LAN LR  I
Sbjct: 327 DTYGHLAGDLTLKEFSALLKSNVRDTDNVGRWGGEEFIIVSPQTDQDGALSLANHLRSKI 386

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           E              T S G+A     + I ++I  AD+ALY AK SGRN+VV 
Sbjct: 387 EEFTFTTVGKK----TASFGVASCSEDDDIQSLIDNADKALYRAKNSGRNKVVT 436


>gi|72383851|ref|YP_293205.1| PAS:GGDEF [Ralstonia eutropha JMP134]
 gi|72123194|gb|AAZ65348.1| PAS:GGDEF [Ralstonia eutropha JMP134]
          Length = 671

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 20/175 (11%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q +  D L+GLLN   F   L S        ++ ++++  DID FK +ND +GHPVGD
Sbjct: 488 LEQTTMSDYLTGLLNRKGFDRRLESAMVQSEEGSKIMALLLVDIDNFKLVNDTYGHPVGD 547

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA------AILANDLRKIIENS 206
           K++  ++ +L    G    V R+GG+EFA         +A      AIL+      I N 
Sbjct: 548 KLLNVVATRLKSCAGETCAVARVGGDEFAVILEDVLTSDAVLRVARAILSATCETFILNG 607

Query: 207 -QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            QI  S+      ++ A +   C     + ++ +AD ALY AK SG+ R + F +
Sbjct: 608 YQIACST------SVGAALKNPCDNNTRNELLLKADTALYSAKHSGKARFILFGE 656


>gi|117921325|ref|YP_870517.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117613657|gb|ABK49111.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 518

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 77/163 (47%), Gaps = 8/163 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +L+ +D L+ L N +A    +         +   L I   DID+FK IND+FGH  GDK
Sbjct: 354 QKLNLLDSLTQLPNRAALEERMELEYRNYQRHRTPLWIAVADIDHFKSINDSFGHSTGDK 413

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  ++  L        FV R GGEEF          + A L N +R+ ++N      + 
Sbjct: 414 TLQVIAMALKNSLRDTEFVARYGGEEFVLILPEIDGGDIAQLLNRVREKVKNIPFKFKN- 472

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I +T+S G A+    E I     RAD ALY AK   R+RVV
Sbjct: 473 QRITVTVSIGAAQVMGNELIHETFERADAALYKAKHESRDRVV 515


>gi|330807611|ref|YP_004352073.1| diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375719|gb|AEA67069.1| putative diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 361

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 17/165 (10%)

Query: 104 SRIDCLSGLLNH----SAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+ L N          +LG    Y +K++I F D+D FK +ND++GH  GD+V+ 
Sbjct: 189 ARYDALTQLPNRLLLAERMRQALGKARIYQQKVAIAFIDLDGFKALNDSYGHDWGDRVLQ 248

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALG--SSEQEAAILANDLRKIIENSQINISSGP 214
            ++ ++         + RLGG+EF A  +G  + E    +L   L     N+ I I +  
Sbjct: 249 IVAARINATLREGDTLARLGGDEFVAGLVGLQAVEDSEPLLKRML--AAANAPILIGA-Q 305

Query: 215 SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++ I  S G+A   E  H+  I  +I +ADQA+Y++KK+G NR+ 
Sbjct: 306 TVEIAASIGVAFYPEHGHE--IDGLISKADQAMYLSKKAGGNRLA 348


>gi|311696943|gb|ADP99816.1| response regulator [marine bacterium HP15]
          Length = 317

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 9/157 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N  AF       +         L+I+ FD+D+FK+INDN GH  GD+V+  + 
Sbjct: 158 DDLTGLHNRRAFFELGNQLLKQTRRNGSPLAIIMFDLDHFKKINDNHGHDAGDEVLRHVG 217

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L+          R+GGEEFA     +   +A+ LA  L  ++  + +       I  T
Sbjct: 218 RVLMSNVREADIAARIGGEEFAILLGDAHAAQASELAERLLGVMHETPVRYHD-VRIRPT 276

Query: 220 ISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255
            S GI+     EP +  ++ RAD A+Y +K  GR RV
Sbjct: 277 ASFGISSLHPDEPNLENLMARADSAMYESKALGRGRV 313


>gi|296102115|ref|YP_003612261.1| RNase II stability modulator [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295056574|gb|ADF61312.1| RNase II stability modulator [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 663

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 18/185 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           SG+ + E   +  R+  L+  D ++GL N +A        I S G    ++ +V+ D+D 
Sbjct: 219 SGTDITEERRAQERLRVLANTDTITGLPNRNAIHELISDAIDSRGET--QVGVVYLDLDN 276

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL----GSSEQEAAI 194
           FK++ND +GH  GD+++  ++  ++        + RLGG+EF   A     GS E  A+ 
Sbjct: 277 FKKVNDAYGHMFGDQLLQAVALAILSCLEEGQVLARLGGDEFIVMATNTSQGSLEAMASR 336

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +   LR+      I I +G S+ I ++       H     ++I  AD A+Y AK++GR +
Sbjct: 337 ILTRLRQPFRIGLIEIYTGCSLGIALAPQ-----HGNDRESVIRNADTAMYTAKENGRGK 391

Query: 255 VVCFS 259
              FS
Sbjct: 392 FCVFS 396


>gi|239994880|ref|ZP_04715404.1| diguanylate cyclase [Alteromonas macleodii ATCC 27126]
          Length = 519

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 107/200 (53%), Gaps = 28/200 (14%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSR--IDCLSGLLNHSAF----ISSLGSY 125
           +I+ ITI   +  I+ S  K   +  +R+S   R   D L  +LN S +     S L ++
Sbjct: 324 LIVGITIEAFIFAIATS-RKVKKLDDDRLSAFKRASTDSLCKVLNRSGWEGIAQSLLTNF 382

Query: 126 NEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
           N++   L+++F D+D FK+IND +GH  GDKV+  ++  L+        VGRLGG+EF  
Sbjct: 383 NKEGGYLTLLFIDVDNFKEINDQYGHHCGDKVLQVIAKILLSRCRDQDAVGRLGGDEFVV 442

Query: 183 AAL----GSSEQ-----EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
            +     G SE+     EA++L  D+R   +N  I++++    +IT      ERC  + +
Sbjct: 443 LSHCYSEGQSERLAARIEASLLERDIRT--DNVVISVTASVGTYIT-----NERC--KDL 493

Query: 234 STIIYRADQALYVAKKSGRN 253
           +T++ +AD+ +Y  K+  + 
Sbjct: 494 TTLLNKADKLMYSVKEKHKT 513


>gi|77360630|ref|YP_340205.1| hypothetical protein PSHAa1689 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875541|emb|CAI86762.1| conserved protein of unknown function [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 423

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 10/164 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S+++ +D L+ + N   F        S +   N +LS++  DID FK+ ND  GH  GD
Sbjct: 252 LSEMAFLDSLTKIANRRRFDEKIVDEFSRVKLANCQLSLIIIDIDNFKKFNDRHGHIAGD 311

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           K +  ++ +L      P  FV R GGEEF      + +Q A  +A  ++K IE   I   
Sbjct: 312 KCLYAVAQKLADTVSRPEDFVARYGGEEFVVLLPQTDKQGALFVAEQIQKAIEMLAIVHE 371

Query: 212 SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRN 253
              + ++++S GI    H +     T I  AD ALY AK  GRN
Sbjct: 372 DSFTGYLSVSMGINTVNHHQCDDHLTFIQAADDALYYAKNQGRN 415


>gi|330960553|gb|EGH60813.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 123

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 1/124 (0%)

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK++ND++GH  GD+V+  ++  L         V R GGEEF      +S   A ++
Sbjct: 1   IDHFKRVNDDYGHYTGDEVLKTVAHGLKAQLRNIDRVFRYGGEEFVVILSNTSADAAQMV 60

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              LR+ + + +      P++ +T+S G +     E   +++ RAD ALYVAK+ GRNR+
Sbjct: 61  GERLRRAVRSLEFR-ELDPALTMTVSLGCSTLLPTETADSLLRRADNALYVAKRQGRNRL 119

Query: 256 VCFS 259
              S
Sbjct: 120 AMAS 123


>gi|323705879|ref|ZP_08117451.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323534875|gb|EGB24654.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 666

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 4/124 (3%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++ FD+D+FK +ND FGH  GD V+  ++D +        +  R GGEEF      +S 
Sbjct: 542 SLIMFDLDHFKNVNDRFGHAAGDTVLKGVADMVKGRIRKTDYFARWGGEEFIILLPETSL 601

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
             A  LA ++R  I      +  G   ++T S G+ E    + I T++ R D  LY AK 
Sbjct: 602 NNATNLAEEIRMQIS----TVKFGDVGNVTASFGVTEYRENDTIDTVLLRVDNMLYEAKN 657

Query: 250 SGRN 253
           +GRN
Sbjct: 658 NGRN 661


>gi|300930118|ref|ZP_07145542.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
 gi|300461979|gb|EFK25472.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
          Length = 452

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHPVGD+VI  + + 
Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +         +  +GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 345 IGKSIRPDDLLAHVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 404

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 405 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 441


>gi|257484328|ref|ZP_05638369.1| GGDEF [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 510

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 104/237 (43%), Gaps = 24/237 (10%)

Query: 36  SIFIATVI--FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
           SIF+  +   F    F  Y    P Y  ++   E    V+ S   +LL   +   +LK L
Sbjct: 1   SIFLVAIAWEFKLESFAMYAMNLP-YDQDFEDAERWRFVLTSTGFALLSMVVPFILLKRL 59

Query: 94  FI----SYNRI-------SQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDY 138
                 SYN +         L+R D LSGLLN   F    ++ L   + + ++   D+D 
Sbjct: 60  MQRLQDSYNDLLKSQALSDSLARHDPLSGLLNRRVFQEQLVARLEQASSQTAVFLIDLDK 119

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILA 196
           FK IND  GH VGD  I  +++ L     G    V RLGG+EF  A  G   Q E A LA
Sbjct: 120 FKLINDTHGHAVGDAAICAVAESLREATAGWQASVARLGGDEFGLAVSGDFTQVELATLA 179

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252
             +   I  S  ++   P + ++ + GIA          T++  AD A+Y  K  GR
Sbjct: 180 ESVLAKIAASSADL---PRLALSATLGIAISPLDGSDADTLLQHADSAMYRGKNGGR 233


>gi|224825540|ref|ZP_03698645.1| diguanylate cyclase [Lutiella nitroferrum 2002]
 gi|224602461|gb|EEG08639.1| diguanylate cyclase [Lutiella nitroferrum 2002]
          Length = 461

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 15/190 (7%)

Query: 80  LLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
           ++LG +   +LK    L  SY +  + S  D L+GL +   F + L         +   L
Sbjct: 263 IMLGALLFEVLKLQTRLQHSYRQAYEASIHDSLTGLSSRRHFDAVLKMALQQQARHQAPL 322

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID+FKQ ND+FGH  GD+ I  ++  +         V R GGEEF A       
Sbjct: 323 TLLMADIDFFKQYNDHFGHVEGDRCIQRIAACMAEQLRGGDTVARYGGEEFVAILQYCDL 382

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPIST--IIYRADQALY 245
            +A   A   R  +E+  +    G S+   ++  +   CH    P +   ++ +AD++LY
Sbjct: 383 VQARQAAERFRAAVESLALPTPPG-SLRPVVTVSVGLYCHPANRPATAGWLVEQADRSLY 441

Query: 246 VAKKSGRNRV 255
            AK++GRNR+
Sbjct: 442 AAKRAGRNRI 451


>gi|196041809|ref|ZP_03109098.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99]
 gi|196027303|gb|EDX65921.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99]
          Length = 567

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++        +  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQAP- 251

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 252 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304


>gi|157164461|ref|YP_001467733.1| GGDEF domain-containing protein [Campylobacter concisus 13826]
 gi|112800344|gb|EAT97688.1| diguanylate cyclase [Campylobacter concisus 13826]
          Length = 364

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 11/180 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---------GSYNEKLSIVFFD 135
           I+ S  K++      I ++S+ D L+GLLN  +   +L          S +  L ++  D
Sbjct: 173 ITSSGYKQISEEKEEIERISKYDFLTGLLNRRSIERTLRYELKELREKSSDANLVVMLGD 232

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID FK+IND +GH  GDKV+  ++  L   F     + R GGEEF         ++   +
Sbjct: 233 IDNFKKINDTYGHDWGDKVLKEIARALQDTFRENDHICRWGGEEFLVILPEVKTEDVKKV 292

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              L   I  +Q+ +    S+ +T    +        I T+I +AD+ LY  KK+G++R+
Sbjct: 293 ETRLGTRI--AQVKLPDKSSVTMTFGLVLCANGVITDIDTVINKADKKLYEGKKNGKDRI 350


>gi|330973494|gb|EGH73560.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 630

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 21/210 (10%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--- 115
           +G   +L  ++  + ++ T  LL+       LK    +  +I  L+  D L+GL N    
Sbjct: 245 HGAPLVLDISVEFITLNNTACLLMNARDIGALKN---AQAQIQHLAYHDPLTGLPNRALL 301

Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
               S  +S L   N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         
Sbjct: 302 LDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 361

Query: 172 VGRLGGEEFA------AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
           V RLGG+EF         + G   ++   LA++LR ++  ++     G  + +T S G+ 
Sbjct: 362 VARLGGDEFVVLICGLEGSQGEVTRQVRELADNLRNLL--AEPMFLDGHRLQVTPSIGVV 419

Query: 226 --ERCHKEPISTIIYRADQALYVAKKSGRN 253
                   P + ++ RAD ALY AK  GRN
Sbjct: 420 LIPDDGLTP-ADLLKRADIALYRAKDCGRN 448


>gi|307946218|ref|ZP_07661553.1| signaling protein [Roseibium sp. TrichSKD4]
 gi|307769882|gb|EFO29108.1| signaling protein [Roseibium sp. TrichSKD4]
          Length = 397

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 89/181 (49%), Gaps = 14/181 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFK 140
           S  + ++L  +  ++ +++  D L+GL N  AF   L          + +++  D+D FK
Sbjct: 210 SMKLARKLHETNRKVREVAETDFLTGLYNRRAFSEHLEKLQADDQTSEFNLLLLDLDGFK 269

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH  GD V+  +  +L  +    + + RLGG+EFA    G  +    I A    
Sbjct: 270 PINDRLGHVAGDLVLKEIGKRLKSLADASL-IARLGGDEFALVVDGPQD----IAAELAE 324

Query: 201 KIIENSQINIS-SGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           K+IE     I   G ++ IT S GI  ++R     +S +++ AD ALY AK  GR R  C
Sbjct: 325 KVIEVISARIDYEGATVSITGSIGITTSDRGQYRTMSDLMHEADLALYEAKGRGR-RQSC 383

Query: 258 F 258
           F
Sbjct: 384 F 384


>gi|260463353|ref|ZP_05811554.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075]
 gi|259030943|gb|EEW32218.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075]
          Length = 260

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 107/233 (45%), Gaps = 26/233 (11%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL-------KE 92
            T  FIA  F       P+   E +    L+     + + L+LG   GS L       ++
Sbjct: 20  GTAFFIAVAFFVDSFNFPYLSTEAVWRAQLT----DLMLPLVLG---GSFLFFLMWKIRQ 72

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---------SIVFFDIDYFKQIN 143
           L I+   +S ++  D L+ +LN  AF   + +Y E+          +++  D D+FK IN
Sbjct: 73  LAIAQRDLSVIAATDSLTAVLNRGAFSMLVEAYLEQTRKQELTRSGALLIIDADHFKSIN 132

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+ +  ++  +         VGR+GGEEF     G    ++ ++A  +R+ I
Sbjct: 133 DRLGHDCGDQALKLIAQTIKAQLRGSDIVGRIGGEEFGVFLPGVDPSQSWLVAESIRRRI 192

Query: 204 ENSQINIS-SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             S+++ S  G S  +++S G            I   AD+ LY AK +GR++V
Sbjct: 193 --SEMDFSPGGRSCPLSVSIGGTSFNGPTTYEAIFSAADRRLYAAKSNGRDQV 243


>gi|254520960|ref|ZP_05133015.1| diguanylate cyclase [Stenotrophomonas sp. SKA14]
 gi|219718551|gb|EED37076.1| diguanylate cyclase [Stenotrophomonas sp. SKA14]
          Length = 447

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 75/169 (44%), Gaps = 21/169 (12%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+GL    AF  +L       SI   D+D+FK  ND  GH  GD V+  ++ +L  V 
Sbjct: 266 DELTGLPGRRAFNETLQRARGTYSIAMVDVDHFKSFNDTHGHDTGDDVLRLVASRLSRV- 324

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---------------- 210
           G      R GGEEFA   L             LR+ IE++++ +                
Sbjct: 325 GDGGRAFRYGGEEFAVVFLDRPAAACVDAVEALRQSIEDTRMQLRDRSTRSRDDDTGRQQ 384

Query: 211 ----SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                SG  + +T+S G+A+       + +I  AD ALY AK  GRN+V
Sbjct: 385 RGRGGSGQVVQVTVSIGLADSRENPRPAAVIKAADLALYRAKDGGRNQV 433


>gi|206578350|ref|YP_002241071.1| diguanylate cyclase [Klebsiella pneumoniae 342]
 gi|288937716|ref|YP_003441775.1| diguanylate cyclase [Klebsiella variicola At-22]
 gi|206567408|gb|ACI09184.1| diguanylate cyclase [Klebsiella pneumoniae 342]
 gi|288892425|gb|ADC60743.1| diguanylate cyclase [Klebsiella variicola At-22]
          Length = 510

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 86/160 (53%), Gaps = 18/160 (11%)

Query: 106 IDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           ID L+G  N  AF   I++L + ++  ++   DID FK IND +GH  GD V+  ++ + 
Sbjct: 358 IDALTGCKNRRAFDSDIAALMNDHQPFALALVDIDNFKSINDTWGHLNGDIVLRNVAREG 417

Query: 163 VVVFGTPMFVG--RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP----SI 216
           + V   P+ +   R GGEEFA           A   ++ R ++E  ++N+         +
Sbjct: 418 LQVL-QPLEISLYRYGGEEFAVVF-------PAEHIDNARTLLETWRVNVERRTWREDGL 469

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +T SAG+ E  + EP+  ++   D+ALY AK+ G+NR++
Sbjct: 470 TVTFSAGLGE-WNMEPLDKLVVSVDEALYKAKQQGKNRIL 508


>gi|209883478|ref|YP_002287335.1| diguanylate cyclase [Oligotropha carboxidovorans OM5]
 gi|209871674|gb|ACI91470.1| diguanylate cyclase [Oligotropha carboxidovorans OM5]
          Length = 317

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 84/163 (51%), Gaps = 11/163 (6%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           + ID L+GL N  AF   L  +        E L + F DID+FK++ND  GH  GD+V+ 
Sbjct: 151 AEIDYLTGLPNRRAFEVLLDRHYGEARAAAESLILAFCDIDHFKRVNDIHGHEAGDRVLK 210

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-IIENSQINISSG-P 214
            ++  L         V R GGEEF       S  EA    +D+RK + E   IN ++  P
Sbjct: 211 AIAAALSKTTDNNCHVARYGGEEFVMLFRNISTNEARKRFDDVRKELAEQRFINRATDRP 270

Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVV 256
              IT+S G+A    + +P   +   AD AL++AK+ GRN++V
Sbjct: 271 VGQITLSGGMANVFAYSDPREALKA-ADDALFLAKERGRNQIV 312


>gi|171059397|ref|YP_001791746.1| diguanylate cyclase [Leptothrix cholodnii SP-6]
 gi|170776842|gb|ACB34981.1| diguanylate cyclase [Leptothrix cholodnii SP-6]
          Length = 636

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 83/155 (53%), Gaps = 2/155 (1%)

Query: 102 QLSRIDCLSGLLN-HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           QL++I    GLL    A  + +   +  L+I   DID FK++ND+ GH  GD+ + FL+ 
Sbjct: 480 QLTQIANRRGLLRCFDAERARVERESADLAIGLLDIDNFKRLNDSLGHQTGDEALKFLAR 539

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
           ++         + R GGEEF     G+   EA  +   +++++ ++++ +  G    +T 
Sbjct: 540 RVGEALRPTDTLARYGGEEFVVLLPGTPSDEAQRVLTRVQRLL-SAELFMYEGKQSFVTF 598

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           SAG+      E I   + RAD+ALY AK++G+NR 
Sbjct: 599 SAGVTLYRPSEAIEVALQRADEALYEAKRTGKNRT 633


>gi|167035393|ref|YP_001670624.1| diguanylate cyclase [Pseudomonas putida GB-1]
 gi|166861881|gb|ABZ00289.1| diguanylate cyclase [Pseudomonas putida GB-1]
          Length = 493

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 8/167 (4%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+ +D L+GL N  +F       +      +  L  +  D+D+FK +ND  GH  GD+V+
Sbjct: 328 LATLDSLTGLPNRRSFDLLAAQALHEAQRDSGPLVALLIDLDHFKALNDTHGHLAGDEVL 387

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              ++ L         + R GGEEF      +  ++A  +A  +R+  E    +    P 
Sbjct: 388 RQFANVLQGSLRQSDILCRWGGEEFIVLLREAEGRQAVEVAEKIRRRTEQLTFSYDDQP- 446

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           + +T S G++    ++ +  ++ RAD+ALY AK++GRNRV   ++ E
Sbjct: 447 LRLTTSIGLSSLQPEDTLHALLTRADRALYRAKQAGRNRVCSDANHE 493


>gi|56475842|ref|YP_157431.1| hypothetical protein ebA784 [Aromatoleum aromaticum EbN1]
 gi|56311885|emb|CAI06530.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 384

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 114/254 (44%), Gaps = 33/254 (12%)

Query: 21  SFSPHTFMIYFSIFF-----SIFIATVIFIANIFLFYIGLT----PFYGLEY---ILVEN 68
           +F P   +   S+F      ++FI++ I +A     Y+  +    P +   +   +L+  
Sbjct: 145 AFLPFVLLAGLSVFPLTLIENVFISSPILLAQALAGYLSWSTLNWPSFAGSFWLLMLITG 204

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           +S+      ++ +   +  S+   L  +++R S    ++   GL N +            
Sbjct: 205 VSMTAGMSQLAFMTALVRQSVRDPLTGAFSRGSGEEMLELQLGLANRN---------QAS 255

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +++ F D+D+FK IND FGH  GDKV+  L+  +         + R GGEEF      + 
Sbjct: 256 ITVAFIDVDHFKSINDRFGHEAGDKVLITLATHITAALRRVDILVRWGGEEFVVIMPNTD 315

Query: 189 EQEAAILANDLRKIIEN-SQINISSGP-SIHITISAGIAERC--HKEPISTIIYRADQAL 244
             +A       R  +E   ++ + + P    +T S G+AER          +I +ADQ +
Sbjct: 316 LAKA-------RTAVERLCRLGLGTAPDGTPVTASIGLAERSIDGAGDWKALIEKADQRM 368

Query: 245 YVAKKSGRNRVVCF 258
           Y AK +GR+R VCF
Sbjct: 369 YHAKHNGRDR-VCF 381


>gi|91977394|ref|YP_570053.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91683850|gb|ABE40152.1| diguanylate cyclase [Rhodopseudomonas palustris BisB5]
          Length = 381

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 13/173 (7%)

Query: 90  LKELFISY----NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L E F+      +R+++ +  D L+GL N +AF+ +L +     +I+  D+D FK +ND 
Sbjct: 190 LSEAFVERLEDKHRLARQATHDFLTGLPNRAAFLQALATIEGTFTIIAIDLDGFKSVNDR 249

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRK 201
            GH  GD+++  ++ +L +  G      R GG+EF    +  A      EA  LA   R 
Sbjct: 250 HGHHAGDELLRQVAKRLALCTGADGIAARFGGDEFMLLKSITAGDDGRAEALDLAR--RA 307

Query: 202 IIENSQINISSGPSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSG 251
           +I+ S     S   + I  SAGI    H       S ++ R D+ALY AK++G
Sbjct: 308 VIDLSMPYRLSDVPVRIGASAGILVSDHALAAGSTSQLLERVDRALYKAKRAG 360


>gi|310657884|ref|YP_003935605.1| hypothetical protein CLOST_0574 [Clostridium sticklandii DSM 519]
 gi|308824662|emb|CBH20700.1| protein of unknown function [Clostridium sticklandii]
          Length = 1751

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 82/180 (45%), Gaps = 11/180 (6%)

Query: 94   FISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
            FI    +S    ID L+   N   F       + S        S+V  DID+FK +ND F
Sbjct: 1402 FIDNYNLSLKYSIDKLTQAYNRQYFDIFIKNELESAQGQKSMFSLVIMDIDFFKSVNDTF 1461

Query: 147  GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
            GH  GD  +   S  +     +     R GGEEF      +S  EA  +A+ +R+ I N 
Sbjct: 1462 GHSFGDVTLKRFSKIVQGSIRSSDLFARYGGEEFVLVLKHTSTVEAYSIADRIREKIYNE 1521

Query: 207  QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
              +    P   IT+S GI+    H      +I +AD ALY AK SGRN+V  + +  NN+
Sbjct: 1522 LKDFEGKP---ITVSMGISTYPEHGVWEEELINKADIALYKAKDSGRNKVCIWDNTLNNS 1578


>gi|308069705|ref|YP_003871310.1| GGDEF domain containing protein [Paenibacillus polymyxa E681]
 gi|305858984|gb|ADM70772.1| GGDEF domain containing protein [Paenibacillus polymyxa E681]
          Length = 661

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 13/166 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDK 153
           +  + +L+ +D L+GL         +  + EK    S++  DID FKQ+ND  GH  GD+
Sbjct: 496 HAEVRRLANMDMLTGLYVRHYVDQIIQQHQEKDFCGSLILVDIDQFKQVNDTHGHQTGDE 555

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  +S+ +           R GGEE A        Q+A   A  +R  +++      + 
Sbjct: 556 ILKSVSNIVRSATRDEDVCARWGGEELAIYLPQLGVQQALGYAEKIRYRVQH-----ETE 610

Query: 214 PSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVV 256
           P   +T+S GIAE    +    I ++ YRAD ALY AK  GRNR V
Sbjct: 611 P--QVTVSCGIAEWNWLDDQISIESLFYRADMALYEAKNEGRNRTV 654


>gi|289626820|ref|ZP_06459774.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|330868820|gb|EGH03529.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 527

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 15/172 (8%)

Query: 107 DCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L      +  E+  LS++  D D+FK+ ND++GH  GD+ +  L+
Sbjct: 336 DKLTGLANRRRFDQFLEVEFKRARRERSLLSLILIDADHFKRYNDHYGHLAGDECLVALA 395

Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +      P  V  R GGEE A    G+ E  A  +A ++ + I + QI   +     +
Sbjct: 396 RVVEQCIRRPGDVAARYGGEEIAVVLPGTDESSARQVAENILQAIRDEQIEHPASSFGIV 455

Query: 219 TISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           T+S G+A     +R   +   ++I  AD+ALY AK  GRNRV   S+I  +T
Sbjct: 456 TVSLGVATFVGTDRQLDQ--RSLIELADRALYAAKSQGRNRVNVASEIATST 505


>gi|58582238|ref|YP_201254.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84624131|ref|YP_451503.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188576800|ref|YP_001913729.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188576992|ref|YP_001913921.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|58426832|gb|AAW75869.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368071|dbj|BAE69229.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188521252|gb|ACD59197.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188521444|gb|ACD59389.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 973

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 8/156 (5%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN S  + ++ +           L++V  D+D+FKQ+ND+ GH VGD V+A + 
Sbjct: 809 DALTGLLNRSGILEAMAAELQGCAHGEHPLAVVLIDLDHFKQVNDDHGHLVGDAVLATVG 868

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +L         VGR GGEE      G  +Q    L   + + +  +   + +   + +T
Sbjct: 869 ARLTACLRDSDKVGRYGGEELLLLLPGVIQQSQRRL-RAIHEALSLAPYEVGAARPLQVT 927

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G++     +  ++++ RAD+ALY AK+SGRNR+
Sbjct: 928 CSVGVSWFRVGDTAASLLARADEALYRAKRSGRNRI 963


>gi|323441850|gb|EGA99490.1| GGDEF domain-containing protein [Staphylococcus aureus O46]
          Length = 327

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 9/168 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
           NR     + D L+GL N   F   L   + K       ++++  DID FK +ND + H  
Sbjct: 153 NRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHKS 212

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  +S  L         + R GGEEF+      S  ++  LA ++R  +E S  ++
Sbjct: 213 GDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFHL 272

Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
            +   I +++S G+      +P S   +   AD  ++VAK  GRN+V+
Sbjct: 273 PNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVM 320


>gi|296100619|ref|YP_003610765.1| hypothetical protein ECL_00249 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055078|gb|ADF59816.1| hypothetical protein ECL_00249 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 532

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 10/158 (6%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+G  N  AF   +  L S ++  ++   DID FK IND +GH  GD V+  ++ + +
Sbjct: 378 DALTGCKNRRAFDSDVDELLSAHQPFALALIDIDNFKSINDTWGHLSGDIVLRNVAREGI 437

Query: 164 VVFGTPMFVG--RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
            +   P  V   R GGEEFA          A  L +  R  +E     +    ++ +T S
Sbjct: 438 QIM-QPHNVSVYRYGGEEFAVIFQADQIASAFSLLDAWRTAVEK---RLWREENLRVTFS 493

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           AG+ E  H EP+  ++   D ALY AK+ G+NR++  S
Sbjct: 494 AGLGE-WHFEPLEELVGSVDNALYSAKQQGKNRIIRTS 530


>gi|291278657|ref|YP_003495492.1| hypothetical protein DEFDS_0225 [Deferribacter desulfuricans SSM1]
 gi|290753359|dbj|BAI79736.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 574

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 105/217 (48%), Gaps = 16/217 (7%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLL-LGYISGSILKELFISYNRISQLSRIDCLSG 111
           I +   Y  E I+++N  L I+   I+ L + +    I ++L     +  ++S  D L+G
Sbjct: 360 IAVMKLYLKESIVIDNDILEILKEVINFLSIAFEREFIRRKLIEEREKFYEISIHDTLTG 419

Query: 112 LLNH---SAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL- 162
             +       I  + + +++     + IV  DID FK IND +GH VGD+V+  ++D + 
Sbjct: 420 CYSRYYLKETIKRVLAIHDRGEIRNVGIVMLDIDDFKNINDTYGHDVGDEVLKVIADIIK 479

Query: 163 --VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
             V V   P+   R GGEEF   A+ +  +   ++A  +R  +E  + +        IT 
Sbjct: 480 NEVRVGDIPV---RYGGEEFMIVAVVNDIKSVYMVAERIRTKLEEYKWDAPLDKE-RITA 535

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S G+  R   E    +I R D  LY AK +G+N V+C
Sbjct: 536 SFGVVLRKKGESFEDVIKRVDINLYKAKSAGKNTVIC 572


>gi|316933746|ref|YP_004108728.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
 gi|315601460|gb|ADU43995.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
          Length = 389

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 12/189 (6%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS 130
           LV+  +T+     ++S +  + L   + R+++ +  D L+GL N + F+ +L S     +
Sbjct: 176 LVLFWLTLREASKHLSAAFTERLEAKH-RLARQATHDFLTGLPNRAGFLQALASSRGSFT 234

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALG 186
           ++  D+D FK IND  GH  GD ++  ++++L    G      R GG+EF      A   
Sbjct: 235 VIAIDLDGFKPINDRHGHHAGDDLLRQVAERLTACAGADGIAARFGGDEFMLLKPIADAE 294

Query: 187 SSEQEAAILAN----DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
               EA  LA     DL      S + +  G S  IT+S+G     H    +  + R D+
Sbjct: 295 PGRNEALALARRAVFDLSMPFRLSDLPVCIGASAGITVSSGALS--HGS-TAQFLERVDR 351

Query: 243 ALYVAKKSG 251
           ALY AK++G
Sbjct: 352 ALYAAKRAG 360


>gi|209808971|ref|YP_002264509.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238]
 gi|208010533|emb|CAQ80901.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238]
          Length = 487

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 9/174 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           + S+L+  D L+G+ N  +F       +++     +  SI+  DID FK+ ND +GH VG
Sbjct: 315 KYSELAYNDYLTGVNNRRSFDLKGSQVLATYRRNRKPFSIIMCDIDNFKEYNDKYGHEVG 374

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D +I   ++  +        +GR GG+EF       S ++A  +A  L+ +I    + I 
Sbjct: 375 DTMITSFAEACLANLRDSDILGRFGGDEFVILLPEQSHEQAHFVAQKLQAVIRKIAVPIE 434

Query: 212 SGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +   + +T S GI+     K  I  ++  AD  LY AKKSGR+ V C + +++N
Sbjct: 435 N-IELSMTCSMGISTITDPKVTIPELLSIADDRLYDAKKSGRDCVKCDAIVKSN 487


>gi|307153423|ref|YP_003888807.1| Chase2 sensor-containing diguanylate cyclase [Cyanothece sp. PCC
           7822]
 gi|306983651|gb|ADN15532.1| diguanylate cyclase with Chase2 sensor [Cyanothece sp. PCC 7822]
          Length = 583

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 78/168 (46%), Gaps = 13/168 (7%)

Query: 102 QLSRIDCLSGLLN----------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +L RI CL GL            +      L +  + LS++  DIDYFK  ND +GH  G
Sbjct: 414 ELKRIACLDGLTQIANRRHFDQYYEQVWERLKAAQQPLSVILCDIDYFKFYNDQYGHQAG 473

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+ +  ++  L     +  FV R GGEEF      +  + A  +   +   + + QI  S
Sbjct: 474 DRCLQQVAQTLAKAVRSTDFVARYGGEEFIIVLPSTDGETAYKIGQRICSQVRSLQIPHS 533

Query: 212 SGPSIHI-TISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256
                HI T+S G+A        S+  +I  AD ALY AK+ GRN VV
Sbjct: 534 KSRVSHIVTLSCGVATLIPDTVSSSGILIATADSALYEAKEKGRNGVV 581


>gi|162447315|ref|YP_001620447.1| membrane-anchored GGDEF domain-containing protein [Acholeplasma
           laidlawii PG-8A]
 gi|161985422|gb|ABX81071.1| membrane-anchored GGDEF domain protein [Acholeplasma laidlawii
           PG-8A]
          Length = 388

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 19/268 (7%)

Query: 3   RSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLE 62
           ++L  FL I+L  E  L S    T  I  ++ F I++   +F+  +   +I +     LE
Sbjct: 121 QNLISFLIIYLVVEI-LNSVIKSTDKIKATLKFPIYVFCTLFLLLMMARFIAVNNHIILE 179

Query: 63  YILVENLSLVIISITIS----LLLGYISGSILK-----ELFISYNRISQLSRIDCLSGLL 113
            I  ++ +   +S  I     ++LG++   I+      +L I    + ++S  D L+GL 
Sbjct: 180 LIPGQDFTYNFLSNIIGGILFVVLGFMISVIINIRAITDLKIERALMEKISVTDHLTGLP 239

Query: 114 NHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           N  A   ++S +    +  +++  DID FK+IND +GH +GDKVI   S  L+ +    M
Sbjct: 240 NRLALEKYVSKIEHNGQPYAVIIADIDEFKKINDTYGHMIGDKVIVEFSKALLNLNDDRM 299

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINISSGPSIHITISAGIA-ER 227
           F  R GG+EF         +    L +++ K I    +QI ++     ++T+S G+A   
Sbjct: 300 FTARYGGDEFVTIV--KRFESVDTLKSNIAKTISTIGTQIKVNE-HHFNLTLSVGVAIYP 356

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRV 255
            H   I  +I++AD AL   K SG+N +
Sbjct: 357 HHGTEIYELIHKADAALGDIKTSGKNSI 384


>gi|56696066|ref|YP_166420.1| diguanylate cyclase, putative [Ruegeria pomeroyi DSS-3]
 gi|56677803|gb|AAV94469.1| diguanylate cyclase, putative [Ruegeria pomeroyi DSS-3]
          Length = 598

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 73/157 (46%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      +L        +   +LS++  D+D+FK+ ND  GH  GD V+  + 
Sbjct: 408 DPLTGLFNRRHLTETLRKQLLHCQTRGGRLSLIAVDVDHFKKFNDTHGHDAGDMVLRAVG 467

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L           R+GGEEF    L  + ++A   A  LR+ +E   +         +T
Sbjct: 468 AALEQACDRDEVACRIGGEEFMLVLLDCAPEDALTRAELLRQSVEEVSVRYGEKTLPRVT 527

Query: 220 ISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV 255
           ISAG+A       +   + R AD ALY AK  GRN+V
Sbjct: 528 ISAGVAHYPRHGTMPQDLMRAADDALYEAKGLGRNQV 564


>gi|325522176|gb|EGD00826.1| putative diguanylate cyclase [Burkholderia sp. TJI49]
          Length = 492

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 90/190 (47%), Gaps = 14/190 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128
           I +S+LL     S L+    + + +  L+R D L+GL N  +F   L     +       
Sbjct: 300 IALSVLLS----SQLRRRMRAESELILLARTDGLTGLDNRRSFGEVLDREWRRARRMRSV 355

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGS 187
            S++F D+D FK  ND +GH  GD  +A ++  +      P  V  R GGEEF      +
Sbjct: 356 FSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGDSIRRPADVAARYGGEEFVVLLPDT 415

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALY 245
           SE  AA +A  +R  I    +  +      +T S G+A     H +    II  AD+ALY
Sbjct: 416 SENGAAQIAERIRLAINELGLEHAGSEYGRVTASIGLASWTPEHDDDPGAIIKAADEALY 475

Query: 246 VAKKSGRNRV 255
            AK +GRN++
Sbjct: 476 YAKATGRNKI 485


>gi|289679897|ref|ZP_06500787.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 609

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 104/210 (49%), Gaps = 21/210 (10%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--- 115
           +G   +L  ++  + ++ T  LL+       LK    +  +I  L+  D L+GL N    
Sbjct: 158 HGAPLVLDISVEFITLNNTACLLMNARDIGALKN---AQAQIQHLAYHDPLTGLPNRALL 214

Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
               S  +S L   N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         
Sbjct: 215 LDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 274

Query: 172 VGRLGGEEFAA---AALGSSE---QEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
           V RLGG+EF        GS +   Q+   LA++LR ++  ++     G  + +T S G+ 
Sbjct: 275 VARLGGDEFVVLICGLEGSQDEVTQQVRELADNLRNLL--AEPMFLDGHRLQVTPSIGVV 332

Query: 226 --ERCHKEPISTIIYRADQALYVAKKSGRN 253
                   P + ++ RAD ALY AK  GRN
Sbjct: 333 LIPDDGLTP-ADLLKRADIALYRAKDCGRN 361


>gi|254500287|ref|ZP_05112438.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
 gi|222436358|gb|EEE43037.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
          Length = 408

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 7/156 (4%)

Query: 107 DCLSGLLNHSAFI------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           DCL+GL N  A         S+   N  L+++ FDID FK++ND  GH  GD V+     
Sbjct: 228 DCLTGLPNRRAVFERAEAFKSVSGANNCLTVIRFDIDEFKRVNDKHGHATGDLVLQVFGR 287

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
                       GRLGG+EF   +      +A ILA  +R     +    + G ++ + +
Sbjct: 288 VCEETRPVDTVAGRLGGDEFVILSTRMEPSKARILAERIRAHFAAACSEETEG-AVQVGL 346

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           SAG++       +   +  AD+A+Y AK SGR + V
Sbjct: 347 SAGVSSVPLDLGLDEALEIADRAMYEAKASGRGKTV 382


>gi|163783661|ref|ZP_02178649.1| Predicted signal transduction protein [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159881066|gb|EDP74582.1| Predicted signal transduction protein [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 869

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/186 (30%), Positives = 94/186 (50%), Gaps = 10/186 (5%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGS----YNEKLSIVFFD 135
           GY+   ++ +  I+  R++ ++  D L+G+ N       I+  G     YN+ +S++  D
Sbjct: 435 GYLK--VVCQHLINTIRLTHMATTDPLTGVSNRRVLEHDIAKFGRLVKRYNKSMSLIMVD 492

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID FK IND +GH VGD V+  ++  +         V R GGEEFA     + +  A  L
Sbjct: 493 IDNFKGINDTYGHQVGDVVLKKVAKLIEESVRETDTVYRYGGEEFAVLCPETDKLGAYEL 552

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
           A  +R+ I  ++  I +   I+IT+S G+A      +    I+  AD +LY AK  G++R
Sbjct: 553 AERIREKIRETKFWIDTSRVIYITVSLGVASVPEDTDNPDEILAIADISLYRAKSEGKDR 612

Query: 255 VVCFSD 260
               +D
Sbjct: 613 TAILTD 618


>gi|160875470|ref|YP_001554786.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica OS195]
 gi|160860992|gb|ABX49526.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica OS195]
 gi|315267657|gb|ADT94510.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica OS678]
          Length = 546

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 12/160 (7%)

Query: 107 DCLSGLLNHSA-FISSLGSYN------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLNH+   +++   YN       ++ I  FD+D+FK++ND +GH  GDKV+   +
Sbjct: 384 DSLTGLLNHTQILVAARRCYNVARRINSQVCIAMFDLDHFKKVNDTYGHAGGDKVLLAFA 443

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L        F GR GGEEF        +  A    N +R+   +  + +  G    +T
Sbjct: 444 HLLQQSLRQTDFTGRYGGEEFMLVLPDMQKPLAIAKLNAIRESFSHI-VFVEDGVEFKVT 502

Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+  ++ C  E     +  AD+ LY AK+ GRN++V 
Sbjct: 503 LSGGLVFSDEC--EEFQDCLLLADKNLYEAKRLGRNQLVV 540


>gi|51594921|ref|YP_069112.1| diguanylate cyclase/phosphodiesterase [Yersinia pseudotuberculosis
           IP 32953]
 gi|51588203|emb|CAH19810.1| diguanylate cyclase/phosphodiesterase domain 1 [Yersinia
           pseudotuberculosis IP 32953]
          Length = 390

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 118/247 (47%), Gaps = 21/247 (8%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLL---LGYI-- 85
            F+IF  + I +++ FL +   T    +  IL++   N+  +I +I + L+   L ++  
Sbjct: 136 LFTIFFISTIALSDNFLAFCLHTAPSAITVILLDDFHNIFRIIFTIMLPLIGFSLHHLML 195

Query: 86  ------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFD 135
                 +  ++  L     + S LS ID L+ L N     S L +   +      ++  D
Sbjct: 196 RRTDNFTRKLVDHLSNEREKFSDLSMIDPLTSLYNRRGLESKLETLLSQSPGNHYVLLLD 255

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK  NDN+GH +GD+ +  +S  +     +   V R GGEEF       SE+ A+ L
Sbjct: 256 IDHFKAYNDNYGHTMGDQALVRISAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYASQL 315

Query: 196 ANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           A  +R+ +    I    +   S  +T+SAGI+       ++  +  AD+ALY AK++GRN
Sbjct: 316 AERVRQRVLGLDIPHVFNHKVSTTVTLSAGISP-LQAYDLAASLKAADEALYRAKRNGRN 374

Query: 254 RVVCFSD 260
            +    D
Sbjct: 375 NIEFAKD 381


>gi|51244717|ref|YP_064601.1| methyl-accepting chemotaxis protein [Desulfotalea psychrophila
           LSv54]
 gi|50875754|emb|CAG35594.1| probable methyl-accepting chemotaxis protein [Desulfotalea
           psychrophila LSv54]
          Length = 387

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 10/166 (6%)

Query: 99  RISQLSRIDCLSGLLNHS-------AFISSLGSYNEKL-SIVFFDIDYFKQINDNFGHPV 150
           +I +L+  D L+ L             ++ L   NEKL +++  DID+FK+IN N+G   
Sbjct: 221 QIGELAIKDTLTNLYTKRFLKEILPTILTKLHQDNEKLLAVIDLDIDHFKKINANYGRSC 280

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  L++ ++       F  R GGEEF      ++E+E  I   ++ +   +  +  
Sbjct: 281 GDRVLKRLANIIIENTRPNDFSIRFGGEEFLLIGFFNNEKE-IIQITEIIRTETDCLVFD 339

Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                 HITISAGIA  R  +E   T + RA + L  AK+SGRNR+
Sbjct: 340 ERNEKFHITISAGIAIYRAEEELFETTLKRAGKKLQEAKESGRNRI 385


>gi|258593353|emb|CBE69692.1| putative Diguanylate kinase [NC10 bacterium 'Dutch sediment']
          Length = 420

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 84/189 (44%), Gaps = 21/189 (11%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           +  + +L+  D L+GL NH  F S L         Y   LS++  DID FKQ ND  GH 
Sbjct: 234 FQEVHRLAITDELTGLFNHRHFYSQLDQDLRRNRRYGHPLSLIMLDIDLFKQYNDFHGHL 293

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+ +   + +L         V R GG+EF      +  ++A + A  +R ++      
Sbjct: 294 AGDEALRLTAARLKKSTRGADIVARYGGDEFGIILPETDPRQALVQAERVRSVMARDHFG 353

Query: 210 ISSGPSIH-ITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVV--------C 257
               P  + +T+S G+A  C       +  ++  ADQALY AK +G N++         C
Sbjct: 354 GQGTPGRNTLTVSLGVA--CLGPDMYKVEDLVRAADQALYCAKAAGGNQIAVSESCGLPC 411

Query: 258 FSDIENNTC 266
            S+     C
Sbjct: 412 HSEGSGKGC 420


>gi|78357093|ref|YP_388542.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219498|gb|ABB38847.1| diguanylate cyclase (GGDEF domain) [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 370

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 96/202 (47%), Gaps = 31/202 (15%)

Query: 91  KELFISYNR----ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
           +E+ +   R    +++L++ D LSGL N  AF       + S       LS++  DID F
Sbjct: 161 REVLLEMERDAAAMTELTQRDPLSGLHNRRAFDAFLSGAVQSWRREGTPLSLIMLDIDNF 220

Query: 140 KQINDNFGHPVGDKVIAFLSDQLV-VVFG------TPMFVGRLGGEEFAAAALGSSEQEA 192
           K  ND +GH +GD+ I  ++  L   V G          V R GGEEF+    G+    A
Sbjct: 221 KNFNDEYGHRIGDQAIQTVARILQEAVRGHAAEHEKDFLVARYGGEEFSVVLRGALASLA 280

Query: 193 AILANDLRKIIENSQ--INISSGP----SIHITISAGIA-----ERCHKEPISTIIYRAD 241
             +A   R  +EN    I  +SG      I IT+SAG+A      R   E    +I  AD
Sbjct: 281 EKIAESARSSMENFNFVIRNNSGEVVRSGISITLSAGVAFASSLWRGAYE--DNLIDSAD 338

Query: 242 QALYVAKKSGRNRVVCFSDIEN 263
           +ALY AK+ GRN V  + D ++
Sbjct: 339 RALYEAKRGGRNLVFRYRDDQD 360


>gi|15893919|ref|NP_347268.1| signal transduction protein [Clostridium acetobutylicum ATCC 824]
 gi|15023503|gb|AAK78608.1|AE007578_6 Signal transduction protein containing diguanylate
           cyclase/phosphodiesterase domain (GGDEF) and domain
           (EAL) [Clostridium acetobutylicum ATCC 824]
 gi|325508046|gb|ADZ19682.1| Signal transduction protein containing diguanylate
           cyclase/phosphodiesterase domain (GGDEF) and domain
           (EAL) [Clostridium acetobutylicum EA 2018]
          Length = 772

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 10/197 (5%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
           + N +L+     I+L+L        KEL +    +  +S  D ++ + N       L   
Sbjct: 309 INNETLLTYEKDINLILEEKIKERTKELLLKNQELEYISNHDPITNVYNRRYLNKRLQCI 368

Query: 126 -NEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
            NEK     ++I++ D+D FK IND +GH +GD V+  +SD+L         + RLGG+E
Sbjct: 369 INEKKLDNQVTILYIDVDGFKTINDTYGHDIGDYVLIEISDRLKKTVKENNILARLGGDE 428

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIY 238
           F     G   +E   + N   K+I + +  I S   + ++TIS G+A   H      +I 
Sbjct: 429 FVIIIEGKLSKEE--IKNICEKLINSCKETIYSDNYLFNVTISIGVAMFPHDAISRNVIM 486

Query: 239 R-ADQALYVAKKSGRNR 254
           + AD A+Y AK  G+NR
Sbjct: 487 KNADIAMYDAKSKGKNR 503


>gi|90422975|ref|YP_531345.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
 gi|90104989|gb|ABD87026.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Rhodopseudomonas palustris BisB18]
          Length = 850

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 55/195 (28%), Positives = 103/195 (52%), Gaps = 16/195 (8%)

Query: 75  SITISLLLGYISGSI---LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------- 124
           S+  +L L +++ S+     EL     ++++L+ +D ++GL N  +F++ L +       
Sbjct: 374 SLQRTLRLEFLTESLRGATAELQRESAKVARLASLDAMTGLANRVSFLAQLSTAFAAARQ 433

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-- 182
           ++ + ++V  D+D+FK +ND  GHP+GD+++   + +L+ +      + RLGG+EFA   
Sbjct: 434 HDGRFAVVCLDLDHFKDVNDTLGHPIGDRLLQIAARRLIGMLKAGDLIARLGGDEFAILL 493

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRAD 241
           A +   +  AAI A  +  + E   ++   G + H++ S GI+           ++  AD
Sbjct: 494 AEVCDRDAIAAIAARLIEGLAERYDLD---GNAAHVSASLGISIYGPATASAEAMMIEAD 550

Query: 242 QALYVAKKSGRNRVV 256
            ALY AK  GRN  V
Sbjct: 551 LALYSAKSEGRNGYV 565


>gi|331652055|ref|ZP_08353074.1| inner membrane protein YcdT [Escherichia coli M718]
 gi|331050333|gb|EGI22391.1| inner membrane protein YcdT [Escherichia coli M718]
          Length = 493

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 7/157 (4%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID+FK++ND +GHP+GD+VI  + + 
Sbjct: 326 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPIGDQVIKTVVNI 385

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           +           R+GGEEF         + A  LA  +R+ +E  +  N        +TI
Sbjct: 386 IGKSIRPDDLFARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 445

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           S G             IYR AD ALY AK++GRN+VV
Sbjct: 446 SIGAVVTQGNALNPNEIYRLADNALYEAKETGRNKVV 482


>gi|330959165|gb|EGH59425.1| response regulator WspR [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 334

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 11/169 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L   D L+GL N   F   L            +LS++  D+DYFK  NDNFGH  GD
Sbjct: 165 LQRLMNSDGLTGLSNRRHFDEYLELEWRRAVRDQTQLSMLMIDVDYFKAYNDNFGHLEGD 224

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  ++  +      P     R GGEEFA     +S   A +LA  LR+ +   +I +I
Sbjct: 225 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVAGMKIPHI 284

Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257
           +      +T+S G+A    +  +S+  +I  AD+ LY+AK +GRN+V  
Sbjct: 285 APAAGSSLTVSIGVATVTPQLEMSSRELILDADKGLYLAKNNGRNQVAV 333


>gi|304408802|ref|ZP_07390423.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica OS183]
 gi|307302805|ref|ZP_07582560.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica BA175]
 gi|304352623|gb|EFM17020.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica OS183]
 gi|306913165|gb|EFN43587.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica BA175]
          Length = 546

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 12/159 (7%)

Query: 107 DCLSGLLNHSA-FISSLGSYN------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLNH+   +++   YN       ++ I  FD+D+FK++ND +GH  GDKV+   +
Sbjct: 384 DSLTGLLNHTQILVAARRCYNVARRINSQVCIAMFDLDHFKKVNDTYGHAGGDKVLLAFA 443

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L        F GR GGEEF        +  A    N +R+   +  + +  G    +T
Sbjct: 444 HLLQQSLRQTDFTGRYGGEEFMLVLPDMQKPLAIAKLNAIRESFSHI-VFVEDGVEFKVT 502

Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +S G+  ++ C  E     +  AD+ LY AK+ GRN++V
Sbjct: 503 LSGGLVFSDEC--EEFQDCLLLADKHLYEAKRLGRNQLV 539


>gi|285018862|ref|YP_003376573.1| two-component system response regulator protein [Xanthomonas
           albilineans GPE PC73]
 gi|283474080|emb|CBA16581.1| putative two-component system response regulator protein
           [Xanthomonas albilineans]
          Length = 460

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 9/164 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+GL N   F+           +  + +S+   D+D+FK +ND  GH  GD
Sbjct: 270 LQDLATRDFLTGLPNRRHFLEQSQRVLPQCLTDQQSVSVAMLDLDHFKHVNDTLGHDAGD 329

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  ++  L         + R GGEEF     G  E         LR  I   Q+N+  
Sbjct: 330 EALRAVASVLTAYARPQDLIARFGGEEFCMLVPGLDEAATTDYFEKLRARIAELQVNVGE 389

Query: 213 GPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             ++ +TIS G+ + +   + +   +  AD+ LY+AK +GRNRV
Sbjct: 390 -KTLRLTISIGVCSSQIQNQALHPFLIEADKYLYLAKAAGRNRV 432


>gi|158425163|ref|YP_001526455.1| GGDEF precursor [Azorhizobium caulinodans ORS 571]
 gi|158332052|dbj|BAF89537.1| GGDEF precursor [Azorhizobium caulinodans ORS 571]
          Length = 519

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 18/179 (10%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVG 151
           ++++L+R D L+G+ N   F   LG     SY     ++++  D+D+FK  ND  GH  G
Sbjct: 336 QLNELARADGLTGIANRRRFDERLGQEWRRSYRSSGTMALLMIDVDHFKAFNDTHGHWTG 395

Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQIN 209
           D ++  ++  L      P   + R GGEEF AA L  +++E A+ +A  +   +   +  
Sbjct: 396 DDLLIRIAATLSQTVHRPGDLIARYGGEEF-AAILPDTDREGALRIAERILDAVRALRFE 454

Query: 210 ISSGPSIHITISAGIAERCHKEP-----ISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            S+G  + +T+S G    C   P     ++ I+  AD ALY AK  GRN ++   D+  
Sbjct: 455 DSAGQVLPVTVSIGA---CALSPSPGQQVADIVRLADAALYEAKDRGRNCIIMAPDMPR 510


>gi|153825043|ref|ZP_01977710.1| ggdef family protein [Vibrio cholerae MZO-2]
 gi|149741368|gb|EDM55402.1| ggdef family protein [Vibrio cholerae MZO-2]
          Length = 359

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 78/164 (47%), Gaps = 19/164 (11%)

Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+G LN       L          NE   I   DID+FK +ND +GH  GDKVI
Sbjct: 178 LSTRDALTGTLNRHQLDGFLKKCLRHRQLANESAVIAVIDIDHFKSVNDLYGHDTGDKVI 237

Query: 156 AFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
                Q+V +  T       + RLGG+EF      +S  +A ++ + +   I+ +     
Sbjct: 238 T----QVVEIMNTHCRELDLLFRLGGDEFLLLFENTSLTDATLVMSHIGCRIQQTHYPYH 293

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +     +T+S G+AE    +       RADQALY +KK G+NRV
Sbjct: 294 AK----VTVSVGLAEALRTDDPEQWFKRADQALYHSKKMGKNRV 333


>gi|220932323|ref|YP_002509231.1| diguanylate cyclase [Halothermothrix orenii H 168]
 gi|219993633|gb|ACL70236.1| diguanylate cyclase [Halothermothrix orenii H 168]
          Length = 462

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 79/165 (47%), Gaps = 9/165 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG---SY----NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I+ L+  D  + L N   F   L    SY    N+ LS+V FDID FK +ND++GH  GD
Sbjct: 294 INYLAITDEGTDLYNQRYFYKRLNRLFSYAKKNNKPLSVVIFDIDNFKSLNDSYGHLFGD 353

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KV+  ++  L         + R GGEEFA     +    A  +A  +R I+         
Sbjct: 354 KVLREVASLLQDNIRKNDILARYGGEEFALILPKTGASIAYNIAERIRCIVNKHIFETGG 413

Query: 213 GPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G  I I+IS GIA    C       +I  AD+ALY +K  G+N +
Sbjct: 414 GHKIKISISGGIATYPECKVSKAIELIDLADKALYKSKDDGKNMI 458


>gi|261250682|ref|ZP_05943256.1| GGDEF family protein [Vibrio orientalis CIP 102891]
 gi|260937555|gb|EEX93543.1| GGDEF family protein [Vibrio orientalis CIP 102891]
          Length = 348

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 107/220 (48%), Gaps = 28/220 (12%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLG----YISG-----SILKELFISYNRISQ 102
           YI L   +    I  +N+S + +SI    L      Y SG     ++LKE   S  ++  
Sbjct: 137 YICLIDMHNWPPIPFDNISFIHLSIVYLFLFSIAYFYDSGRRKTLALLKE---SNRQLQA 193

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           LS  D L+ L N     + L   ++   +   DID FK+IND++GH VGD+V+   +  L
Sbjct: 194 LSHTDMLTQLFNRRHMEALLQEPHKVQWLAIVDIDDFKKINDDYGHDVGDQVLIQTARTL 253

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS---GPSIHIT 219
                +   VGR GGEEF  A       + +I+   +R I    Q  I+S   G    +T
Sbjct: 254 ERETKSVGQVGRWGGEEFLIAF---ETADYSIIEERVRAI----QTIIASQDFGIERPVT 306

Query: 220 ISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
           +S+G+A   H++   S    RAD+ALY AK SG+N   CF
Sbjct: 307 VSSGVA--YHQDTGKSDAFRRADEALYQAKNSGKN---CF 341


>gi|209519183|ref|ZP_03267987.1| diguanylate cyclase [Burkholderia sp. H160]
 gi|209500409|gb|EEA00461.1| diguanylate cyclase [Burkholderia sp. H160]
          Length = 510

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 86/179 (48%), Gaps = 13/179 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+R D L+GL N   F   +          N  LS++  D+D FK  ND +GHP GD
Sbjct: 318 LRELARTDGLTGLNNRRTFEEHVNDEWRRAQRNNWPLSLLLIDVDNFKGFNDLYGHPAGD 377

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
             +  ++  +      P     R GGEEFA     +    A  +A  +R  ++  Q    
Sbjct: 378 GALIGVARCIEQNMRRPGDTAARFGGEEFAVLLPDTDAAGAQRIAEQIRAAVQALQRGHV 437

Query: 212 SGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCF-SDIENNTC 266
           +     +T+S G A   H   I+T   ++  AD+ALY AK +GRNRV+ + +  + +TC
Sbjct: 438 ASAHHVLTVSVGAAT-AHGALIATSRVLVDAADEALYRAKDAGRNRVMVYGATADTDTC 495


>gi|83312993|ref|YP_423257.1| GGDEF domain-containing protein [Magnetospirillum magneticum AMB-1]
 gi|82947834|dbj|BAE52698.1| FOG: GGDEF domain [Magnetospirillum magneticum AMB-1]
          Length = 558

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 97/202 (48%), Gaps = 14/202 (6%)

Query: 64  ILVENLSLVIISITISLLLGYISGSI--LKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           +L   +S    S    LL+  ++  +    E   ++ R+ +LSR D L+GL N  AF   
Sbjct: 345 LLWREMSRAAWSDDDRLLIDDVANQVGLASEQITNHERMVKLSRTDGLTGLFNRRAFFEE 404

Query: 122 LGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVG 173
           +     +L       ++++ D+D FK +ND  GH  GD+ +  + D L++    P+  V 
Sbjct: 405 IARRFHRLKREGKPAALIYVDLDNFKAVNDVHGHQTGDEALLAVRD-LLLQHTRPIDLVA 463

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKE 231
           RLGG+EFA     + E  A     D+ +  ++     S  P   +  S G+A     + E
Sbjct: 464 RLGGDEFAIWLEAAEEHIAVKRCQDVLEAAKDLD-RFSGSPEKPLGCSLGVAVHGGSYNE 522

Query: 232 PISTIIYRADQALYVAKKSGRN 253
            +  +I RAD+A+Y  K+SG+ 
Sbjct: 523 ALEDLIARADKAMYEVKRSGKG 544


>gi|226942938|ref|YP_002798011.1| intracellular signalling protein [Azotobacter vinelandii DJ]
 gi|226717865|gb|ACO77036.1| intracellular signalling protein with diguanylate cyclase and
           phosphodiesterase activities [Azotobacter vinelandii DJ]
          Length = 802

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 14/178 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDN 145
           + E   +  R+  L+  D L+  L +  ++      L +    LS++F DID+FK+IND 
Sbjct: 360 ISERLQAEQRLRFLAHFDPLTHHLANRHYLVQRLEQLLATRTPLSLLFLDIDHFKRINDT 419

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRK 201
            GH VGD ++  ++ +L  +    + V R GG+EF    A  A   + + A  L  D + 
Sbjct: 420 LGHEVGDHLLVEIARRLTRLVPDQVLVARSGGDEFLLLLARRAAEQARELAETLLRDFKT 479

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++  Q      PSI      GIA    +   + ++ +AD ALY AK +GRNR+  +S
Sbjct: 480 PLQVGQYECFLTPSI------GIANCDGQGDATDLLKQADLALYAAKDAGRNRLAVYS 531


>gi|117924807|ref|YP_865424.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Magnetococcus sp. MC-1]
 gi|117608563|gb|ABK44018.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Magnetococcus sp. MC-1]
          Length = 571

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 105/211 (49%), Gaps = 17/211 (8%)

Query: 67  ENLSLVII---SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----- 118
           E LSL II   +  IS  +G  S    ++  I+  ++   +  D L+GL N S       
Sbjct: 363 EWLSLSIIRGENQQISHYIGLFSDITTRK--IAEEKLKHQAHHDPLTGLPNRSLLEDRLQ 420

Query: 119 --ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
             +S    Y  K+++++ D+D+FK +NDN+GH  GD V+  +S ++           R+G
Sbjct: 421 QAVSKARRYEGKIAVLYIDLDHFKPVNDNYGHEAGDAVLREISARIRYELRQSDTAARVG 480

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGIA-ERCHKEPIS 234
           G+EF A    +  +E  ++    +K+I   Q  ++ G  S  +  S GI+    H   I+
Sbjct: 481 GDEFVAVL--TEIREEHLVMGVAQKLIHAIQKPVNFGNESFQVGCSIGISLYPIHGNSIT 538

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            ++  AD A+Y AK+ GRNR  C + ++  T
Sbjct: 539 KLLKSADTAMYRAKQEGRNR-FCVATLDKET 568


>gi|315635908|ref|ZP_07891170.1| diguanylate cyclase [Arcobacter butzleri JV22]
 gi|315479887|gb|EFU70558.1| diguanylate cyclase [Arcobacter butzleri JV22]
          Length = 619

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 106 IDCLSGLLNH---SAFISSLGSYNE----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+GL N      FI     +      K +I+F DIDYFK IND +GH  GD ++  L
Sbjct: 447 VDGLTGLYNRRYLDEFIEKKLPHESQDGSKFAIMFLDIDYFKMINDTYGHDAGDAILQKL 506

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           SD +        F+ R GGEEF       +E  A  LA  + +       N  +G +   
Sbjct: 507 SDTMKASISENEFIVRFGGEEFLIIMKNPTESSARELATKINQEFAKLVFNY-NGQAFSK 565

Query: 219 TISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           T+S G +      + I   I  AD +LY AK++GRN++V F 
Sbjct: 566 TVSIGYSFFPDDADQIWKCIKYADISLYEAKETGRNKIVRFQ 607


>gi|262279015|ref|ZP_06056800.1| GGDEF domain-containing protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259366|gb|EEY78099.1| GGDEF domain-containing protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 409

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 83/174 (47%), Gaps = 11/174 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           EL     ++S LS+ D L+GL N      +L +       +   L+I+  DIDYFK  ND
Sbjct: 222 ELMQQAQQLSLLSQQDALTGLANRRYLDETLDNEWRRALRHEMPLTIMMVDIDYFKAYND 281

Query: 145 NFGHPVGDKVIA-FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GH  GD+ +         +   +   V R GGEEF      ++ Q+A I    L   I
Sbjct: 282 TLGHLKGDECLKEIAIAISSIAARSGDLVARYGGEEFLLLFPMTNAQQALIQVERLMNAI 341

Query: 204 ENSQI-NISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254
           +   I +  S  S  +TIS G+A    +  + IS  + RAD ALY AK +GRN+
Sbjct: 342 DKIAIKHPCSDVSPQVTISVGVATTIPRLNDSISAFVARADHALYKAKTNGRNQ 395


>gi|227823490|ref|YP_002827463.1| sensory box/GGDEF family protein [Sinorhizobium fredii NGR234]
 gi|227342492|gb|ACP26710.1| sensory box/GGDEF family protein [Sinorhizobium fredii NGR234]
          Length = 888

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 55/161 (34%), Positives = 79/161 (49%), Gaps = 11/161 (6%)

Query: 107 DCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N       LG +       +++SI   D+D FKQIND  GH  GD+++   + 
Sbjct: 466 DPLTGLPNRRFLDQILGDHARQFDARDRVSIFHIDLDRFKQINDTMGHAAGDEILRHAAG 525

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHIT 219
            L        FV R+GG+EF     G + +E A LA+    IIE     +        I 
Sbjct: 526 LLRSSARESDFVARIGGDEFVIIRAGGNTEEDAALAS---SIIEAMSTPVRYKDQECRIG 582

Query: 220 ISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +S GI A+    + ++ I+  AD ALY AK+ GRNR   F+
Sbjct: 583 VSIGIAAQAAATDELAQILVNADIALYEAKRRGRNRHETFT 623


>gi|254504373|ref|ZP_05116524.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
 gi|222440444|gb|EEE47123.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
          Length = 307

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 14/159 (8%)

Query: 107 DCLSGLLNH----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+G+ N     +   + L + +  L I   DID+FK+IND  GH +GD  I  ++ +L
Sbjct: 151 DALTGVPNRRFLEAELPARLSAADLSLHIALIDIDHFKKINDAHGHVIGDHAIRVVA-RL 209

Query: 163 VVVFGTPMFV-GRLGGEEFAAAALGSSEQEA-----AILANDLRKIIENSQINISSGPSI 216
           +     P  V  R GGEEF      +   E       I ++  R+ I +++   S GP  
Sbjct: 210 IQTHLRPQDVLCRYGGEEFCVLFYNTEPAECLSLLETIRSDISRRTIYHNRTGQSFGP-- 267

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +TISAG+A+    + + T + RAD  +Y AK +GRNR+
Sbjct: 268 -MTISAGLAQSQPGDDLETALQRADAQMYAAKSTGRNRI 305


>gi|160933913|ref|ZP_02081300.1| hypothetical protein CLOLEP_02775 [Clostridium leptum DSM 753]
 gi|156866586|gb|EDO59958.1| hypothetical protein CLOLEP_02775 [Clostridium leptum DSM 753]
          Length = 692

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 19/179 (10%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKL---SIVFFDIDYFKQINDNFGHP 149
           +  +R+ + +  D L+G  N  A +  +  Y  +E +   ++ F DID FK  ND++GH 
Sbjct: 518 LETSRLKRQASTDSLTGTYNRKAAVELISDYLLSEPMPQGALFFMDIDDFKSFNDDYGHQ 577

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN---- 205
            GDK++  + ++L   F     VGR+GG+EF       S +EA I     RK  E     
Sbjct: 578 YGDKILQKIGEKLRGAFRGTDIVGRIGGDEFIVFLEEISSREAII-----RKAREVCGMF 632

Query: 206 SQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            ++    G    IT S G+A  C  +      +++ +ADQALY AKK G+N+    +D+
Sbjct: 633 RKVGDEIGSPREITGSVGVA--CSPDDGLSFDSLLAKADQALYHAKKCGKNQFSFSTDL 689


>gi|294666653|ref|ZP_06731890.1| response regulator [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292603559|gb|EFF46973.1| response regulator [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 515

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 16/200 (8%)

Query: 71  LVIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
           +V+ ++  +LLLG   ++    L+ +  +  ++S  + +D L+G+ N  AF   L     
Sbjct: 315 IVVAALGCTLLLGVGIWLDLQ-LRRMHRNEAKLSTEAWVDALTGIANRRAFDHRLSRALQ 373

Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEE 179
                   LS++  D+D+FK  ND +GH  GD  +  ++  +      +     R GGEE
Sbjct: 374 DAVRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCSRRSEDLAARYGGEE 433

Query: 180 FAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIAE-RCHKEPIS--T 235
           F      +    A  LA+ +R  + E   +++SS  S H+T+S G A     + P+S   
Sbjct: 434 FGMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGAATFEPGEAPLSPNA 493

Query: 236 IIYRADQALYVAKKSGRNRV 255
           I++ AD ALY AK+ GRNR 
Sbjct: 494 IVHDADSALYRAKQKGRNRT 513


>gi|325982978|ref|YP_004295380.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas sp. AL212]
 gi|325532497|gb|ADZ27218.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas sp. AL212]
          Length = 798

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 8/164 (4%)

Query: 107 DCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GLLN   F + L         N+  ++++ D+D FK IND+ GH  GDK++  ++ 
Sbjct: 371 DSLTGLLNRKEFENRLSKILTSMRKNDMHALLYLDLDQFKIINDSCGHSAGDKLLRQVTA 430

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            L         + RLGG+EF        + +A  +A+ LR++++N +     G +  I +
Sbjct: 431 LLHSKLRARDTLARLGGDEFGVILEHCPKDQALQVADTLRELVQNFRFQW-RGKTFTIGV 489

Query: 221 SAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           S G+    H  + +   +  AD A Y AK+ GRNRV  +  + +
Sbjct: 490 SIGLFPITHGNQGLEHALNAADSACYAAKEQGRNRVQIYQSVPH 533


>gi|209549382|ref|YP_002281299.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535138|gb|ACI55073.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 760

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 90/181 (49%), Gaps = 15/181 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQIND 144
           K+L  +  R+  LS  D L+GL N   F+  + S   +      L ++  D+D FK+IND
Sbjct: 317 KKLVRARQRLEYLSLHDALTGLANRR-FVDQMISQPRRPDGEDCLILIHIDLDRFKEIND 375

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKII 203
             GH  GD V+   + +L  + G      R+GG+EF  A   ++ E EAA LA   ++I+
Sbjct: 376 TKGHAGGDMVLQTTASRLADLTGPTDVAARIGGDEFIFARWSANPEPEAAELA---KQIV 432

Query: 204 ENSQINIS-SGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  Q  I   G    +  S G+A   E      +  ++  AD ALY AKK+GR R   F+
Sbjct: 433 DALQQPILIDGAEYVVGASVGVAWETEPASGRDLGQLLLNADLALYEAKKAGRGRAAIFT 492

Query: 260 D 260
           +
Sbjct: 493 E 493


>gi|241666725|ref|YP_002984809.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240862182|gb|ACS59847.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 747

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 89/181 (49%), Gaps = 15/181 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQIND 144
           K+L  +  R+  LS  D L+GL N   F+  + S   +      L  +  D+D FK+IND
Sbjct: 303 KKLVRARQRLEHLSLHDALTGLPNRR-FVDRMISQPPRPRPQDCLIFIHIDLDRFKEIND 361

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKII 203
             GH  GD V+   + +L  + G      R+GG+EF  A+  +  E +A  LA   R+I+
Sbjct: 362 TRGHAGGDAVLQATASRLADLVGPNDVAARIGGDEFIFASWSADPEPKATALA---RQIV 418

Query: 204 EN-SQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +   Q  I    +  +  S G+A   ER     +  ++  AD ALY AKK+GR R   F+
Sbjct: 419 DTLDQPLIIDDAACVVGASVGVAWETERALGPDLGQLLLNADLALYEAKKAGRGRAAVFT 478

Query: 260 D 260
           +
Sbjct: 479 E 479


>gi|217958216|ref|YP_002336760.1| sensory box/GGDEF family protein [Bacillus cereus AH187]
 gi|217064052|gb|ACJ78302.1| sensory box/GGDEF family protein [Bacillus cereus AH187]
          Length = 567

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTNNHTQDEMRQLATSVLSCFQAP- 251

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 252 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304


>gi|119512832|ref|ZP_01631899.1| Putative diguanylate cyclase (GGDEF domain) [Nodularia spumigena
           CCY9414]
 gi|119462505|gb|EAW43475.1| Putative diguanylate cyclase (GGDEF domain) [Nodularia spumigena
           CCY9414]
          Length = 314

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 96/183 (52%), Gaps = 12/183 (6%)

Query: 85  ISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDI 136
           IS S L++   S N+ + +L+ ID L+ + N   F   L    +++       S++  D+
Sbjct: 129 ISQSQLQKQLESANQELQKLATIDQLTQIANRRRFEEYLVPEWQRMAREQLPISLILGDV 188

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           D+FK  ND +GH +GD+ +  ++  +   +  +   V R GGEEF      ++ + A IL
Sbjct: 189 DFFKLYNDTYGHQLGDRCLQAVAKSIQNTIKRSTDLVARYGGEEFTVILPNTNMEGAIIL 248

Query: 196 ANDLRKIIENSQINISSGP-SIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGR 252
           A+ +  ++    I  S+ P S  +TISAG+A    K       II  AD+ALY AK +GR
Sbjct: 249 ADAICTVVRKLAIPHSTSPVSSFVTISAGVATLIPKPGSDYQQIIALADKALYQAKTAGR 308

Query: 253 NRV 255
           +R+
Sbjct: 309 DRL 311


>gi|160900682|ref|YP_001566264.1| response regulator receiver modulated diguanylate cyclase [Delftia
           acidovorans SPH-1]
 gi|160366266|gb|ABX37879.1| response regulator receiver modulated diguanylate cyclase [Delftia
           acidovorans SPH-1]
          Length = 360

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 11/183 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           S+  EL  +  +++++  +D L+GL+N   F       I+S     + L+++  D+D+FK
Sbjct: 167 SLSAELHEANQKLNEMVELDQLTGLVNRRGFDRILHAEIASARREGQPLTLMLCDLDHFK 226

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDL 199
           + ND +GH  GD+ +  +   L  V   P  V  R GGEEFA     +    A   A  +
Sbjct: 227 RYNDTYGHVHGDECLKQIGRLLREVCVRPRDVAARYGGEEFALILPRTPRSGAMTFARAV 286

Query: 200 RKIIENSQINISSGP-SIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
            +++   +I     P    +T+S GI      E  S   ++ RADQALY AK  GR+R  
Sbjct: 287 GQMLRVLRIRHPDSPHESGLTLSGGITTCIPDEYTSAEAMLMRADQALYAAKAQGRDRFF 346

Query: 257 CFS 259
            F 
Sbjct: 347 SFE 349


>gi|84386952|ref|ZP_00989976.1| hypothetical protein V12B01_23320 [Vibrio splendidus 12B01]
 gi|84378242|gb|EAP95101.1| hypothetical protein V12B01_23320 [Vibrio splendidus 12B01]
          Length = 467

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 17/173 (9%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDK 153
            + R++ L+  D L+GLLN   F + L + +E+  + +  FDID FK +ND  GH VGD+
Sbjct: 294 EHQRLNDLAMRDPLTGLLNRRGFEARLLAQDEQPIIGVGVFDIDDFKVVNDQHGHKVGDE 353

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           VI  ++  ++        V R GGEEF  A  G S +  + +   ++  I        +G
Sbjct: 354 VICHVAQLMLNSVRQQDIVARFGGEEFVVAITGESSELLSSIFERIQNDISLQSYRCPTG 413

Query: 214 PSIHITISAG-----------IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             ++I++S G           +      + I +    +D+ LY AK +G+N+V
Sbjct: 414 DKVNISVSGGATLYSLYKFDSVGHLWENQSIRS----SDEQLYKAKAAGKNQV 462


>gi|327485429|gb|AEA79835.1| GGDEF family protein [Vibrio cholerae LMA3894-4]
          Length = 359

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 78/164 (47%), Gaps = 19/164 (11%)

Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+G LN       L          NE   I   DID+FK +ND +GH  GDKVI
Sbjct: 178 LSTRDALTGTLNRHQLDGFLKKCLRHRQLANESAVIAVIDIDHFKSVNDLYGHDTGDKVI 237

Query: 156 AFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
                Q+V +  T       + RLGG+EF      +S  +A ++ + +   I+ +     
Sbjct: 238 T----QVVEIMNTHCRELDLLFRLGGDEFLLLFENTSLTDATLVMSHIGCRIQQTHYPYH 293

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +     +T+S G+AE    +       RADQALY +KK G+NRV
Sbjct: 294 AK----VTVSVGLAEALRTDDPEQWFKRADQALYHSKKMGKNRV 333


>gi|291527143|emb|CBK92729.1| diguanylate cyclase (GGDEF) domain [Eubacterium rectale M104/1]
          Length = 860

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 10/166 (6%)

Query: 98  NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            RI   +  D L+GL N        + FI      + + ++++ D+D FK IND  GH  
Sbjct: 429 QRIENQANNDFLTGLYNRMRCEQDLAKFIDDSVKNDTRGAMIYIDLDDFKHINDGLGHQY 488

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD ++  +S  L  V        R+GG+EF     GSS      + ND+++I        
Sbjct: 489 GDVLLKAISHSLTQVKEIENHCYRMGGDEFIVIVTGSSVDRLESIINDIQQIFVRPW--F 546

Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             G   + TISAG+A        +  +I RAD AL+ AKK G+NR+
Sbjct: 547 LKGEDYYCTISAGVAFFPTDASTVEDVIRRADIALFNAKKEGKNRI 592


>gi|188581844|ref|YP_001925289.1| diguanylate cyclase [Methylobacterium populi BJ001]
 gi|179345342|gb|ACB80754.1| diguanylate cyclase [Methylobacterium populi BJ001]
          Length = 506

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 94/206 (45%), Gaps = 15/206 (7%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE- 127
           L L  +++T+SLL G      L+     +  +++LSR D L+GL N   F   L    E 
Sbjct: 298 LVLCGLTVTLSLLFG----RELRRRAEMHAEMARLSRTDALTGLANRRRFEQVLARACED 353

Query: 128 ------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEF 180
                  LS++  D D+FK+ ND +GH VGD+V+  L+  L      P  +  R+GGEEF
Sbjct: 354 ARRTGNPLSLLVVDADHFKRYNDRYGHAVGDEVLKGLAGCLKAAVPRPGDLACRVGGEEF 413

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                 +    A  +A  +   +    I  +      +T+S G+A       +  +   A
Sbjct: 414 VLLLPNTDAAGARRVAERVHAQVSGLAIASAGIAPGAVTVSIGLATGITDADLYGL---A 470

Query: 241 DQALYVAKKSGRNRVVCFSDIENNTC 266
           D ALY AK  GRN+  C S +   + 
Sbjct: 471 DAALYEAKACGRNQTRCASRLTGRSA 496


>gi|254225207|ref|ZP_04918820.1| GGDEF family protein [Vibrio cholerae V51]
 gi|125622306|gb|EAZ50627.1| GGDEF family protein [Vibrio cholerae V51]
          Length = 359

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 78/164 (47%), Gaps = 19/164 (11%)

Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+G LN       L          NE   I   DID+FK +ND +GH  GDKVI
Sbjct: 178 LSTRDALTGTLNRHQLDGFLKKCLRHRQLANESAVIAVIDIDHFKSVNDLYGHDTGDKVI 237

Query: 156 AFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
                Q+V +  T       + RLGG+EF      +S  +A ++ + +   I+ +     
Sbjct: 238 T----QVVEIMNTHCRELDLLFRLGGDEFLLLFENTSLTDATLVMSHIGCRIQQTHYPYH 293

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +     +T+S G+AE    +       RADQALY +KK G+NRV
Sbjct: 294 AK----VTVSVGLAEALRTDDPEQWFKRADQALYHSKKMGKNRV 333


>gi|289664597|ref|ZP_06486178.1| response regulator [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289667163|ref|ZP_06488238.1| response regulator [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 494

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 12/178 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           L+ +  +  ++S  + +D L+G+ N  AF   L            +LS++  D+D+FK  
Sbjct: 315 LRRMHRNEAKLSTEAWVDALTGIANRRAFDYRLSCALQDAVRLEAQLSVLMIDVDHFKLY 374

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD  +  ++  +         V  R GGEEF      +    A  LA+ +R 
Sbjct: 375 NDTYGHVNGDACLRLIASAIASCSRRSEDVAARYGGEEFGMILPQTDAAGALRLADAVRN 434

Query: 202 -IIENSQINISSGPSIHITISAGIAE-RCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
            + E   +++SS  S H+T+S G A     + P+S   I++ AD ALY AK+ GRNR 
Sbjct: 435 AVAELGLMHLSSPTSAHVTVSIGAATFEPGQAPLSANAIVHDADSALYRAKQKGRNRT 492


>gi|212638999|ref|YP_002315519.1| GGDEF and EAL domain-containing protein [Anoxybacillus flavithermus
           WK1]
 gi|212560479|gb|ACJ33534.1| Multidomain signal transduction protein (GGDEF and EAL domains)
           [Anoxybacillus flavithermus WK1]
          Length = 765

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 21/167 (12%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N  AF+  L              +++F D+D FKQIND FGH +GD++I  + 
Sbjct: 338 DFLTGLFNRRAFVMKLEEELIRAKQQQHHFAVIFIDVDRFKQINDYFGHQIGDELIVQIG 397

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP----- 214
             L        F+ R GG+EF                ++LR+ + +  ++ S  P     
Sbjct: 398 RLLKETIRPTDFIARQGGDEFTIIFTPFKH------VDELRRFV-HRLVSFSQQPVAVQH 450

Query: 215 -SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I I++S G+A   +  E + T++  AD A+Y AK+ G+N+   F+
Sbjct: 451 LDIRISLSVGVAVYPYDGETVETLMKHADIAMYRAKEQGKNQYQFFN 497


>gi|39934196|ref|NP_946472.1| putative diguanylate cyclase/phosphodiesterase [Rhodopseudomonas
           palustris CGA009]
 gi|192289722|ref|YP_001990327.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           TIE-1]
 gi|39648044|emb|CAE26564.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
           [Rhodopseudomonas palustris CGA009]
 gi|192283471|gb|ACE99851.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           TIE-1]
          Length = 776

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 85/171 (49%), Gaps = 15/171 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLS-IVFFDIDYFKQINDNFGHP 149
           RI  L+R D L+ L N  +F   +        G    +LS ++F D+D FKQIND  GHP
Sbjct: 330 RIVHLARYDELTALPNRVSFRDEIERILEAEHGRGKTRLSALLFIDLDQFKQINDTLGHP 389

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN-SQ 207
            GD+++  ++++L  +     +V R GG+EF       +S ++AA LA   R+I++  S 
Sbjct: 390 CGDRLLCSVAERLRDMLRPDDYVARFGGDEFVVFQQNIASNEDAAALA---RRIVDRLSD 446

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +     + I  S GIA          ++  AD ALY AK  GR    CF
Sbjct: 447 RYLIDHHVVEIGASIGIAMTSPGTKADILLKNADMALYRAKADGRGN-YCF 496


>gi|109899678|ref|YP_662933.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
 gi|109701959|gb|ABG41879.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
          Length = 666

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 6/163 (3%)

Query: 107 DCLSGLLNHSAFISSLGSY--NEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+ L N  AF  +L     + +LS  + F D+DYFK IND  GH  GD+++  ++  L
Sbjct: 254 DPLTELQNRRAFERNLHEIMDDRRLSYFLCFIDLDYFKTINDTCGHAAGDEILVKVARIL 313

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                +   V RLGG+EF+          A  +AN++++ I     +   G + H++ S 
Sbjct: 314 KANVRSNDIVARLGGDEFSILIKDCPFDNALQIANNIKENIRGLTYHW-EGETFHLSASI 372

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           G+A + H    + ++  AD A  +AK +GRN V  + D+ N T
Sbjct: 373 GVAPKVHGSTTTELLNSADVACGIAKNAGRNTVHLY-DVSNET 414


>gi|300713226|ref|YP_003739265.1| diguanylate cyclase/phosphodiesterase [Erwinia billingiae Eb661]
 gi|299060297|emb|CAX53547.1| diguanylate cyclase/phosphodiesterase [Erwinia billingiae Eb661]
          Length = 702

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 9/168 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGD 152
           S  R+ +L+ +D L+ L + SAF+  LG   E     +++  D+D FK++ND  GH  GD
Sbjct: 271 SEARLCELASLDMLTRLASRSAFMEQLGQMTEAGVPYTLLMTDLDGFKEVNDTLGHAAGD 330

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
            ++  +++Q+ +     +   RLGG+EF     G    EA + A    ++I   QI  S 
Sbjct: 331 ALLCHVAEQIRLACADAVVAARLGGDEFIVLLCGGV-AEATLTAE---RLISCIQIPFSY 386

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            G  + +  S GIA    H    S ++  AD ALY AK SG+   V F
Sbjct: 387 HGAPLIVGASTGIASFPEHGLDPSAVMSAADLALYRAKASGKGCSVLF 434


>gi|302878474|ref|YP_003847038.1| diguanylate cyclase [Gallionella capsiferriformans ES-2]
 gi|302581263|gb|ADL55274.1| diguanylate cyclase [Gallionella capsiferriformans ES-2]
          Length = 315

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 99/183 (54%), Gaps = 14/183 (7%)

Query: 88  SILKELFISYNRISQL---SRIDCLSGLLNHSAFIS------SLGSYNEK-LSIVFFDID 137
            +LKE  I++ R   L   +  D L+GL N +  +       S+ +  E+ +S++F D+D
Sbjct: 133 DLLKE--ITHRRQKHLFGLAHFDQLTGLPNRTLLLDRLSQGISVANRTERAISLLFIDLD 190

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND++GH +GD ++  ++ +L+          R+GG+EF    L S+ + A  +AN
Sbjct: 191 GFKYVNDSYGHAIGDSLLKEVATRLLSCLREGDTAARMGGDEFVVILLESNIERAVSVAN 250

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  I+  S   +       I+ S GIAE   H + ++ ++  AD+A+Y AK SG++++ 
Sbjct: 251 RILNILR-SHYELGKKDISCISASIGIAEHPDHADDVNALLTAADKAMYQAKNSGKDQIS 309

Query: 257 CFS 259
            ++
Sbjct: 310 IYT 312


>gi|218679447|ref|ZP_03527344.1| diguanylate cyclase with PAS/PAC sensor [Rhizobium etli CIAT 894]
          Length = 182

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 78/170 (45%), Gaps = 15/170 (8%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+G++N  AF        +     N   S++  DID FK  ND +GHP GD+ +
Sbjct: 3   LAETDGLTGIVNRRAFDEAFARETAGSARKNTPFSLLMVDIDRFKAYNDTYGHPAGDQCL 62

Query: 156 AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
             +S  L      P   V R GGEEF      +S + A I+A    + +    I  S   
Sbjct: 63  RVVSKCLRQSVSRPADIVARYGGEEFVVFLPDTSAKGAMIVAEQFARRLAKENIAHSGSE 122

Query: 215 SIHITISAGIAERCHKEPI-----STIIYRADQALYVAKKSGRNRVVCFS 259
              +T S G+A  C    +     + ++  AD ALY AK  GRNR++  S
Sbjct: 123 FSRVTASIGLA--CATGAVLRTNPNRLLTEADAALYDAKTQGRNRILAHS 170


>gi|163782897|ref|ZP_02177893.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882018|gb|EDP75526.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 525

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 13/167 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++  L+  D L+G+ N  A       ++ S   Y    S++  D+D FK +ND FGH  
Sbjct: 364 RKLHTLATHDQLTGVYNRRALLMFFEKYLHSARRYGIPFSVILIDLDNFKYVNDQFGHQT 423

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+   +  +          GR GGEEF   AL     +  ++A  LR+ +E ++ + 
Sbjct: 424 GDRVLKTFAKLVKGSLRRTDVFGRWGGEEF--LALLPFNDKPYMVAEKLRRKVEETEFSR 481

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                  +T S G       + I +++ RAD+ALY AK+ G+N  V 
Sbjct: 482 VG----RVTASFGATTYREGDDIDSMMARADEALYEAKRKGKNTTVV 524


>gi|146309094|ref|YP_001189559.1| diguanylate cyclase [Pseudomonas mendocina ymp]
 gi|145577295|gb|ABP86827.1| diguanylate cyclase [Pseudomonas mendocina ymp]
          Length = 439

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 28/200 (14%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVF 133
           + + IS+++  +  S+  E +       Q++  D L+GL    A    L        I  
Sbjct: 229 LQVMISMVMLMLVASVAHEAY-------QMAFRDELTGLPGRRALNERLQRLGRDYVIAM 281

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D+FK+ ND  GH VGD+V+  ++ QL  V G      R GGEEF     G S ++  
Sbjct: 282 VDVDHFKKFNDTHGHDVGDQVLRLVASQLRKVGGGGKAY-RYGGEEFTLLFPGRSLEQCL 340

Query: 194 ILANDLRKIIENSQINI-------------------SSGPSIHITISAGIAER-CHKEPI 233
                +R  IE  ++ +                        + +T+S G+AER   +   
Sbjct: 341 PHMETVRLAIEQYRMQLRDKQNRPRDDREGKPRRAGKGASEVSVTVSMGVAERKAEQRNP 400

Query: 234 STIIYRADQALYVAKKSGRN 253
             +I  AD+ALY AK +GRN
Sbjct: 401 QEVIKEADKALYSAKAAGRN 420


>gi|110633701|ref|YP_673909.1| response regulator PleD [Mesorhizobium sp. BNC1]
 gi|110284685|gb|ABG62744.1| response regulator receiver modulated diguanylate cyclase
           [Chelativorans sp. BNC1]
          Length = 457

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 79/160 (49%), Gaps = 9/160 (5%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N     S L S           LS++  DID FK IND +GH  GD V+  ++
Sbjct: 295 DPLTGLHNRRYLDSHLQSLFDRAEARRRPLSVMIVDIDRFKSINDTYGHDGGDAVLRAVA 354

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHI 218
            +L         V R GGEEF      +    A  +   +R +I E + +   S  +I +
Sbjct: 355 ARLRRSLRGIDLVCRYGGEEFVVVMPETELSIAERVGERIRQQIAEGAFLLGDSAGAISV 414

Query: 219 TISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
           T+S G+A     ++ +  ++ RAD ALY AK SGRNRVV 
Sbjct: 415 TVSIGVAALLQPQDTVEALMKRADMALYEAKSSGRNRVVA 454


>gi|331694351|ref|YP_004330590.1| diguanylate cyclase [Pseudonocardia dioxanivorans CB1190]
 gi|326949040|gb|AEA22737.1| diguanylate cyclase [Pseudonocardia dioxanivorans CB1190]
          Length = 286

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           L  SYNR     R   L+ LL+  A +       + + +   DID+FKQ+ND +GH +GD
Sbjct: 97  LTASYNRRYLDER---LAALLSDLADLGDDTVRTDGICVALADIDHFKQVNDTYGHLLGD 153

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  +  +L        F  R GGEEFA    G    EA  L    R+ I     +   
Sbjct: 154 RVLQRMVVELDAALPEGAFCARYGGEEFALVLPGRDLAEAVRLCEAARERIARHPWH-EL 212

Query: 213 GPSIHITISAGIAERCHKEPISTIIYR----ADQALYVAKKSGRNRVVCFSD 260
            P + +T+S G+A   H +   T + R    AD  LY AK+SGRN  V + D
Sbjct: 213 HPDLTVTVSIGVA---HSDGRPTGVERLIGAADAHLYTAKQSGRN-AVAYRD 260


>gi|262274571|ref|ZP_06052382.1| hypothetical protein VHA_001548 [Grimontia hollisae CIP 101886]
 gi|262221134|gb|EEY72448.1| hypothetical protein VHA_001548 [Grimontia hollisae CIP 101886]
          Length = 531

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 83/178 (46%), Gaps = 11/178 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           +L  +  R++Q+SR D L+ + N       L         Y   LSI+  DID+FKQ ND
Sbjct: 354 QLEEANKRLNQISREDSLTQVPNRRMLDEKLDEEWRRALRYQTPLSILIVDIDHFKQYND 413

Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH +GD+ +  +++ L  V       + R GGEEF     GSS + A  +AN     +
Sbjct: 414 KYGHALGDQCLTKVAEALSNVERRAGALLARFGGEEFVFLLPGSSRENALCVANRALDAV 473

Query: 204 ENSQINISSGPSIHI-TISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCF 258
            N  I     P   I TIS G       +P     +   AD ALY AK +G+N+   F
Sbjct: 474 RNLAIPHGGSPIAPIVTISIGGKTTIPDKPNNQQQLFIDADVALYEAKSAGKNQAFVF 531


>gi|260768669|ref|ZP_05877603.1| GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260616699|gb|EEX41884.1| GGDEF family protein [Vibrio furnissii CIP 102972]
          Length = 382

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 87/181 (48%), Gaps = 12/181 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEK------LSIVFFDIDYFKQIN 143
           ++L  +  ++  LS  D L+ L N    +  L +Y NE       L  +  D DYFKQ+N
Sbjct: 193 QQLMQANRQLEALSMTDSLTALPNRRKAMRQLEAYWNESQQQGLPLVCIMIDADYFKQVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GD+V+  L+  L   F +   V RLGG+EF      +       +A   R+ +
Sbjct: 253 DSCGHDAGDRVLMALAHTLKHAFRSDDLVCRLGGDEFLVICPNTDLDGGVHIAELTRQQV 312

Query: 204 ENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            N  +     P    +IS G+AE  H        +I  AD A+Y AKK+G+NR VC +  
Sbjct: 313 NNLLVPTGMEP-WRGSISVGVAE-SHGFMNDHHALIKLADTAVYRAKKAGKNR-VCVAQF 369

Query: 262 E 262
           E
Sbjct: 370 E 370


>gi|226307762|ref|YP_002767722.1| hypothetical protein RER_42750 [Rhodococcus erythropolis PR4]
 gi|226186879|dbj|BAH34983.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
           PR4]
          Length = 786

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 92/188 (48%), Gaps = 17/188 (9%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQIN 143
           GS +   +     I +L+ +D L+GL N  +F S L S      ++ +   D+D FK IN
Sbjct: 328 GSDITHSYHQRQNILRLAEVDSLTGLRNRYSFNSQLSSRLRDGRRVWLAILDLDNFKSIN 387

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA---ILANDLR 200
           D  GH VGD V+  ++ +L  V  +    GRLGG+EFA A   S+  ++A   I + D  
Sbjct: 388 DRLGHHVGDDVLRDVASRLHSVLRSNEICGRLGGDEFAIAFDDSAFDDSAFDDIASAD-- 445

Query: 201 KIIENSQINISS--------GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSG 251
           ++ E  Q  + S        G  I I  S G        + +  ++  AD ALY AK+SG
Sbjct: 446 EVEERFQTILDSFERPFSLVGNQIRIRASLGYGSMPDDADSLEDLVIVADLALYHAKESG 505

Query: 252 RNRVVCFS 259
           RN++  F 
Sbjct: 506 RNQIRAFD 513


>gi|302185551|ref|ZP_07262224.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 334

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 11/167 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L   D L+GL N   F   L            +LS++  D+DYFK  NDNFGH  GD
Sbjct: 165 LQRLMNSDGLTGLSNRRHFDEYLELEWRRATREQSQLSMLMIDVDYFKPYNDNFGHLEGD 224

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  ++  +      P     R GGEEFA     +S   A +LA  LR+ +    I +I
Sbjct: 225 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVAGMNIPHI 284

Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255
           +  P   +T+S G+A    +  + +  +I  AD+ LY AK +GRN+V
Sbjct: 285 APVPGSSLTVSIGVATMTPQVGMQSRQLILDADKGLYQAKNNGRNQV 331


>gi|206978155|ref|ZP_03239037.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97]
 gi|222094380|ref|YP_002528439.1| sensory box, ggdef family protein [Bacillus cereus Q1]
 gi|206743627|gb|EDZ55052.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97]
 gi|221238437|gb|ACM11147.1| sensory box, GGDEF family protein [Bacillus cereus Q1]
          Length = 567

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTNNHTQDEMRQLATSVLSCFQAP- 251

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 252 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304


>gi|59713525|ref|YP_206300.1| GGDEF domain-containing protein [Vibrio fischeri ES114]
 gi|59481773|gb|AAW87412.1| GGDEF domain protein [Vibrio fischeri ES114]
          Length = 443

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 6/159 (3%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           Y +++ +   D ++G      +   L +  E  S +  DID+FK++ND +GH  GD VI 
Sbjct: 282 YVKVTIMRSYDHMTGFYRRDFYEPKLKAL-ESASFLMIDIDHFKRVNDTYGHDFGDVVIQ 340

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++ ++           R GGEEF       ++ +    A  +R++IE+  I+      I
Sbjct: 341 EVAHRIQNCIRVNDIAIRWGGEEFIVIFQKINQDDLMNKAESIREVIESKSID-----GI 395

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ITIS G A +   E +S  I RAD ALY +K +GRN V
Sbjct: 396 EITISIGGATQRDFEAVSDAIKRADIALYYSKNAGRNIV 434


>gi|323488320|ref|ZP_08093568.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis
           MPA1U2]
 gi|323397978|gb|EGA90776.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis
           MPA1U2]
          Length = 796

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 93/183 (50%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           S + LKE   + +++  ++  D LSGL N   F+  L +        + KL++VF D+D 
Sbjct: 349 SNNQLKE---TVHQMKHMAYHDILSGLPNRRLFLEKLEASIVEAKHKSHKLAVVFIDLDR 405

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK IND FGH  GD ++   S +++    +   + R GG+EF         E++ A + +
Sbjct: 406 FKNINDTFGHEFGDLLLQAFSQRILDNLRSIDTLSRQGGDEFTLLLNAIKEEKDIAPIIH 465

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            L+K +E     I  G  ++I++S GI+      +    ++  AD A+Y AK+ GRN   
Sbjct: 466 KLQKALEKPL--IIKGQELYISMSIGISVYPKDGDTTDELLKNADNAMYSAKEKGRNNYQ 523

Query: 257 CFS 259
            FS
Sbjct: 524 FFS 526


>gi|325981725|ref|YP_004294127.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas sp. AL212]
 gi|325531244|gb|ADZ25965.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas sp. AL212]
          Length = 1136

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 12/168 (7%)

Query: 96  SYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           S  R++ L+  D L+GL N        H A   +L  +  +++ ++ D+D FK +ND+ G
Sbjct: 684 SEARLAHLAHYDALTGLPNRLLVQSRLHHAIERTL-RHGNQIAALYLDLDRFKNVNDSLG 742

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206
           HP+GD+++  L+ +L         + RLGG+EF           E A++A  L  ++  +
Sbjct: 743 HPIGDELLVMLALRLKKRLREEDTLARLGGDEFLVVLEDIKDSNEPAMVAQTLIDLLA-T 801

Query: 207 QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
             ++ SG  I I  S GI+        ++ +I  AD A+Y+AK+ GRN
Sbjct: 802 PFSLPSGHEIFINTSIGISLFPTDANSVTELIQHADMAMYLAKQEGRN 849


>gi|254785909|ref|YP_003073338.1| ggdef family protein [Teredinibacter turnerae T7901]
 gi|237685702|gb|ACR12966.1| ggdef family protein [Teredinibacter turnerae T7901]
          Length = 427

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 81/173 (46%), Gaps = 8/173 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHS---AFISSLGSYNEKL---SIVFFDIDYFKQIN 143
           L +L     +  +LS  D L+G++N +   A I +L     +L   +++  DID+FK+IN
Sbjct: 250 LHQLREESAQYKKLSTTDALTGVINRAGLDAIIHALTLEPGQLCGMAVLVLDIDHFKRIN 309

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH VGD+++   + ++           R GGEEF   A          LA  +R  +
Sbjct: 310 DSRGHDVGDRILFEFARKIKACIRADDIFARWGGEEFIVLARLGDHASVQTLAEKIRTAV 369

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             S    S    + +T+S G A     E       RADQ LY AK  GRN VV
Sbjct: 370 YQSTFEPSH--PVKLTVSIGAARITADEAFEQAFRRADQLLYQAKNLGRNCVV 420


>gi|226314792|ref|YP_002774688.1| hypothetical protein BBR47_52070 [Brevibacillus brevis NBRC 100599]
 gi|226097742|dbj|BAH46184.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 530

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 8/162 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +++  +R D L+GL N      ++  +  +    SI+  D+D FK IND +GH  GD+V+
Sbjct: 368 QLTHDARTDPLTGLTNRRTLEETMQKWMAEQIPFSIMMMDLDRFKAINDTYGHQAGDEVL 427

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +  +           R GGEEF      +  +EA  +A  +R+ +E     I     
Sbjct: 428 RHFAKIISSSLRPEDVSCRFGGEEFVVLVSHTGLEEAYQVAERIRRALETRTNPIGQ--- 484

Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +T+S GIA    H      +++ AD+A+Y AK++GRN+ +
Sbjct: 485 -RLTVSQGIAHYPSHAVSPEGLLHVADEAMYKAKRAGRNQTM 525


>gi|229916655|ref|YP_002885301.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
 gi|229468084|gb|ACQ69856.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
          Length = 351

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 7/158 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           +  + ID L+GL N    +  +       +  +++  D+D+FKQ+ND +GH  GD  +  
Sbjct: 195 THRATIDELTGLPNRYRTLEQMNDMEMSGKPWTLLVIDVDHFKQLNDTYGHLAGDAALRH 254

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +   L        FVGR GGEEF     G        +A  + + + ++      G  I 
Sbjct: 255 IGQTLERHRPPAGFVGRYGGEEFLLVIEGGEGMTK--VAEGIVQTVRHTTFEF-QGERIP 311

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +T+S G A   H EP   +  RAD ALY AK++GR++V
Sbjct: 312 MTVSIGAAIAGH-EPSMVVFERADAALYEAKRNGRDQV 348


>gi|94265550|ref|ZP_01289297.1| GGDEF:GAF:Histidine kinase, HAMP region [delta proteobacterium
           MLMS-1]
 gi|93453950|gb|EAT04300.1| GGDEF:GAF:Histidine kinase, HAMP region [delta proteobacterium
           MLMS-1]
          Length = 595

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 93/188 (49%), Gaps = 22/188 (11%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIV 132
           LL  ++  I  E+ ++  R+ +L+  D L+GL +     +++  + +          S++
Sbjct: 409 LLAAVAEQI--EITLANARLYRLAITDGLTGLYSKRYCETAINKFRDTHAADQGRLFSVL 466

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF---AAAALGSSE 189
             D+D+FK +ND  GHPVGD+V+  L++ +           R GGEEF    A  + ++E
Sbjct: 467 MLDLDHFKLVNDTHGHPVGDEVLIQLAELIRGSIRQDDIACRYGGEEFIILVAEGIKAAE 526

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITIS---AGIAERCHKEPISTIIYRADQALYV 246
           Q    +A  L + +        SG  +  TIS   AG  E  H +  + +I  ADQALY 
Sbjct: 527 Q----IAERLCRAVAEHVFRCRSGLELRCTISIGGAGFPE--HGQNAAEVIAAADQALYQ 580

Query: 247 AKKSGRNR 254
           AK  GRNR
Sbjct: 581 AKNGGRNR 588


>gi|326410776|gb|ADZ67840.1| GGDEF domain-containing protein [Brucella melitensis M28]
 gi|326554068|gb|ADZ88707.1| GGDEF domain-containing protein [Brucella melitensis M5-90]
          Length = 191

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 99/196 (50%), Gaps = 19/196 (9%)

Query: 72  VIISITISLLLGYISGSILKELFISY-------NRISQLSRIDCLSGLLNHSAFISSLGS 124
           +++   I++LLG    S L+EL  SY       N +++++ +D L+GLLN  +FI    +
Sbjct: 1   MLLPFLIAMLLGVFWFSRLEELERSYRTAVKRANELARVASVDPLTGLLNRRSFIQQFNA 60

Query: 125 YNEKLSIVFF---DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
            N+     +F   D+DY KQIND +GHP GD  I  ++  L     +   + R+GG+EF 
Sbjct: 61  ANKAGVRGWFLIVDVDYLKQINDQYGHPAGDDAIIAVAQALEDCLSSDSLIARIGGDEFC 120

Query: 182 A-AALGSSEQEAAILAN-DLRK--IIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           A    G+     ++L++  LR   ++   + N+ S     +T+S G       +    ++
Sbjct: 121 AFVPKGAINDVDSVLSDISLRADGLLREKRPNVGS----SLTVSVGRISCKTGQIFEEVL 176

Query: 238 YRADQALYVAKKSGRN 253
             AD+ LY  KKS R 
Sbjct: 177 SIADEQLY-RKKSQRQ 191


>gi|319401177|gb|EFV89392.1| diguanylate cyclase domain protein [Staphylococcus epidermidis
           FRI909]
          Length = 356

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 101/213 (47%), Gaps = 18/213 (8%)

Query: 55  LTPFYGLEYILVENLSLVIIS--ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112
           L+P Y L    VE L L+ IS  ITI+  + ++    +   F   NR     + D L+GL
Sbjct: 144 LSPIYEL----VEILVLIPISFIITIASAITFVD---IWHFFSLVNRYENEDKYDYLTGL 196

Query: 113 LNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N   F   L   + K       L+++  DID FK +ND++ H  GD V+  +S  L   
Sbjct: 197 GNVKEFDRHLNEVSSKAEEKKQSLALLLIDIDGFKDVNDHYSHQSGDAVLKQMSQLLKNY 256

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                 + R GGEEF+      +  ++  LA ++R  +E S  ++ +   I +++S G+ 
Sbjct: 257 VPNQFKIFRNGGEEFSVVIRDYTLDQSVKLAENIRSGVEKSSFHLPNKEVIKLSVSIGVG 316

Query: 226 ERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
                +  S   +   AD  ++VAK  GRN+V+
Sbjct: 317 YLTQDDRKSQRKVFKDADDMVHVAKSEGRNKVM 349


>gi|313683572|ref|YP_004061310.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313156432|gb|ADR35110.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 445

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 16/180 (8%)

Query: 90  LKELFISYNR-ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           + ++    NR ++QL+  D L+ + N   F       +S +      L+++  D+DYFK+
Sbjct: 269 ITQILQQKNRHLTQLATKDSLTEIHNRHMFAELFSQELSIIKRQGGNLALMMIDLDYFKR 328

Query: 142 INDNFGHPVGDKVIA-FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +ND +GH +GD V+  F+S     V    +F  R GGEEF      +  +EA  +   +R
Sbjct: 329 VNDTYGHNIGDYVLKRFVSLVASSVREADLF-ARWGGEEFVLLLRNTGCEEAYCVGEKIR 387

Query: 201 KIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +IE     I     +  IT S GI E   ++ + + I RAD ALY AK  GRNR +  S
Sbjct: 388 SMIE-----IQPFEDVGRITCSIGITEVRSEDTLISAIERADNALYSAKDMGRNRTMTCS 442


>gi|298249673|ref|ZP_06973477.1| diguanylate cyclase [Ktedonobacter racemifer DSM 44963]
 gi|297547677|gb|EFH81544.1| diguanylate cyclase [Ktedonobacter racemifer DSM 44963]
          Length = 713

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 87/185 (47%), Gaps = 11/185 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEKLS---IVFFDIDY 138
            G +L EL   Y   +  + ID ++ L NH A +S    +L     + S   I+F D+D+
Sbjct: 529 QGVLLLELEKLYREQAFAATIDPVTELPNHRAVMSYIDATLARAQAEHSSFIIMFIDLDH 588

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND +GH  GD ++  ++ +L         +GR GGEEFA     S        A  
Sbjct: 589 FKSVNDQWGHRAGDTILYEVAQRLHANLHQEDVIGRYGGEEFALICTNSDLPTTRKRARQ 648

Query: 199 LRKIIENSQINIS---SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           L  I+       S   +   I +T S GIA    H      +I +AD+A+Y AK+ GRN 
Sbjct: 649 LCTILAERPFLCSVRDNTYEISVTASIGIAAYPRHGTTRDALIEQADRAMYRAKQKGRNC 708

Query: 255 VVCFS 259
           + C S
Sbjct: 709 ICCSS 713


>gi|91223439|ref|ZP_01258704.1| response regulator [Vibrio alginolyticus 12G01]
 gi|91191525|gb|EAS77789.1| response regulator [Vibrio alginolyticus 12G01]
          Length = 405

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 83/158 (52%), Gaps = 5/158 (3%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +++  D L+GL N           N + +I   DID+FKQ+ND  GH  GD V+  +++ 
Sbjct: 253 KMANQDALTGLWNRRFLFEQPHVENAQRNIAMLDIDFFKQVNDTHGHEGGDAVLVMIANI 312

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L + F   + V RLGGEEF   A G  +     L   +R+ IE + I      +I +T S
Sbjct: 313 LKIYFPNDI-VARLGGEEFCIQASGDYDGFLTRLEQ-MRQRIEKTPITYLD-KNILVTAS 369

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            G++    +  +   I  AD+ LY+AK++GRN+++  S
Sbjct: 370 IGVSNI--EGELEQQIKVADERLYMAKENGRNQIISSS 405


>gi|70732798|ref|YP_262565.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5]
 gi|68347097|gb|AAY94703.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5]
          Length = 332

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 10/156 (6%)

Query: 107 DCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N  AF+ +              ++++  D+D+FK+++D +GH  GD+V+   S
Sbjct: 167 DALTGIGNRRAFMVNGERMLIECQRRCSPMALLLCDLDHFKRLDDAYGHQTGDQVLVAFS 226

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L    GT     R+GGEEFA     + EQ A  +A  +R+      +      S+ I 
Sbjct: 227 QVLAETLGTKDVYARIGGEEFACLLAATDEQAAVTVAERVRQAFARLPLLEPGLLSVSIG 286

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   ++       +  ++  AD+ALY AK  GRNRV
Sbjct: 287 V---VSSETRGYDLPRLLSLADEALYDAKHQGRNRV 319


>gi|89093685|ref|ZP_01166632.1| hypothetical protein MED92_11284 [Oceanospirillum sp. MED92]
 gi|89082081|gb|EAR61306.1| hypothetical protein MED92_11284 [Oceanospirillum sp. MED92]
          Length = 444

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 76/166 (45%), Gaps = 9/166 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGH 148
           +  +  +L+  D ++GL N  +           L    + L  V  DIDYFK+IND +GH
Sbjct: 274 ARQKAERLAHTDVMTGLDNRRSLYQKCDEILKFLNRSTDHLCAVVIDIDYFKKINDTWGH 333

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD  I  + D L           R GGEEFA     +   +A   A  +R  IE   I
Sbjct: 334 NIGDHAIKLVGDLLKQSIRRTDIAARYGGEEFALILPNTDLHQAYKFAEKVRLRIEEMVI 393

Query: 209 NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
             +   SI +T S G+A        +  ++  AD ALY AK++GRN
Sbjct: 394 E-TENESIDLTASFGVATYNASMNEVGDLLNAADIALYSAKRAGRN 438


>gi|254228737|ref|ZP_04922160.1| fog: ggdef domain containing protein [Vibrio sp. Ex25]
 gi|262396541|ref|YP_003288394.1| GGDEF family protein [Vibrio sp. Ex25]
 gi|151938684|gb|EDN57519.1| fog: ggdef domain containing protein [Vibrio sp. Ex25]
 gi|262340135|gb|ACY53929.1| GGDEF family protein [Vibrio sp. Ex25]
          Length = 527

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 91/192 (47%), Gaps = 15/192 (7%)

Query: 75  SITISLLLGYISGSILKELFISY-NRISQLSR---IDCLSGLLNHSAFISSLGS---YNE 127
            + + L+L  +    LKE    + N ++QL +    D L+ L N       L     ++ 
Sbjct: 336 ELQLKLILSELENKELKETTKQHKNTVAQLQQDVFTDPLTSLHNRRWLEVKLKDLLLHDT 395

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAA 183
           + +++  DID+FK IND   H VGDK I  +S +L   F    F G    R GGEEF   
Sbjct: 396 EFALMVIDIDHFKSINDELSHLVGDKAIKRVSQELAGYF---KFKGASCVRFGGEEFLVI 452

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              S+ + A + A + R+ I     +   G    +T+S GI      E      YRAD+A
Sbjct: 453 LENSNLERAEMHAENYRERIYQYGWDDILGER-GLTVSIGITLHREGENTQRTFYRADKA 511

Query: 244 LYVAKKSGRNRV 255
           LY AK +GRN+V
Sbjct: 512 LYRAKANGRNQV 523


>gi|326423984|ref|NP_761170.2| GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|319999363|gb|AAO10697.2| GGDEF family protein [Vibrio vulnificus CMCP6]
          Length = 515

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 76/154 (49%), Gaps = 13/154 (8%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+  LN  AF   L    EK    S++ FDID+FKQIND +GH  GD+V+  ++D   
Sbjct: 362 DPLTHTLNRRAFRHDLTQMLEKQAAFSLIGFDIDHFKQINDRYGHLGGDQVLIDVAD--- 418

Query: 164 VVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            V GT +  G    R GG+EF   +  +   E       +R  IE +         IH T
Sbjct: 419 -VIGTVLQEGDRFYRFGGDEFGILSSVTERSELECYLEAIRDRIEKTACYYQD-TEIHCT 476

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +S G A  C +E +  ++ + D  LY +K  GRN
Sbjct: 477 LSIGAAVHCDEE-LEDLVQKMDVQLYRSKDKGRN 509


>gi|302186511|ref|ZP_07263184.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 397

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 28/190 (14%)

Query: 85  ISGSILKELFISYNRISQLSRI-------DCLSGLLNHSAFISSLGSYNE--KLSIVFFD 135
           + G +L+   + + R   L+R+       + ++ +  H+         NE   ++I+  D
Sbjct: 221 LRGRLLQVQLVEFARTDGLTRLFNRRYQDEVMTSVWEHA--------RNEPANVAIILLD 272

Query: 136 IDYFKQINDNFGHPVGDKVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           ID+FK  NDN+GHP GD  +  L     Q     G   F  R GGEE     +G++ Q  
Sbjct: 273 IDHFKSYNDNYGHPQGDTCLRLLCQKVQQSAHAHGAVAF--RFGGEEVLVLMIGNAVQAR 330

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKK 249
            +       + E    +   G +  +TIS G+A  C   P+++   +I  AD ALY AK+
Sbjct: 331 EVAGALQNAVAELKLPHPVLGENALVTISLGVA--CATAPLTSAENLIGAADNALYAAKR 388

Query: 250 SGRNRVVCFS 259
           +GRN  VCF+
Sbjct: 389 AGRN-CVCFA 397


>gi|242238669|ref|YP_002986850.1| diguanylate cyclase [Dickeya dadantii Ech703]
 gi|242130726|gb|ACS85028.1| diguanylate cyclase [Dickeya dadantii Ech703]
          Length = 359

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 2/124 (1%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D+FK +ND++GH  GD ++  +S  L  + G      R GG+E       S+++
Sbjct: 228 LMLIDVDHFKYVNDSYGHEAGDYLLTEISVVLRNIAGKYDVPARFGGDELGIIIQNSTDK 287

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
              + A+ L   +  + I + + P+   TIS GIA   H     + +  ADQALY AKKS
Sbjct: 288 IVTMTAHQLHAKV--ATIRLPADPTFCCTISIGIARAEHAATPQSWLNSADQALYAAKKS 345

Query: 251 GRNR 254
           G+NR
Sbjct: 346 GKNR 349


>gi|261408356|ref|YP_003244597.1| diguanylate cyclase [Paenibacillus sp. Y412MC10]
 gi|261284819|gb|ACX66790.1| diguanylate cyclase [Paenibacillus sp. Y412MC10]
          Length = 387

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 126/279 (45%), Gaps = 51/279 (18%)

Query: 19  LESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISIT 77
           L SF P+T   I+ SI+F      V+ +A ++L Y  +TP  G        L++ +I   
Sbjct: 122 LPSFLPYTLDPIWQSIYFD-----VLQLAALYLAYTQVTPRIGQPIKYALGLAVYVIWTI 176

Query: 78  ISLLLGYISGSILKEL----------------FISYNRISQLSR-------IDCLSGLLN 114
           +  +  Y SGS+   L                FI + RI +L +        D L+GL N
Sbjct: 177 LQAVHTY-SGSLSPALQGLALALPVLFYSIVFFILFRRIVELMQSIYRSAITDGLTGLYN 235

Query: 115 HSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVI----AFLSDQLVVVFG 167
              F+  L  Y     K+S +F DID FK++ND  GH   D+V+    A + ++L  +  
Sbjct: 236 RRHFMKHLDHYAAQELKISAIFCDIDNFKKLNDTQGHARADEVLKQVAAIMEEELEGIGI 295

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
           T    GR GGEE  A  +    + A +      ++   S + IS G S+   +  G+   
Sbjct: 296 T----GRYGGEELVALVVDRKAKPAQVAEKIRARVASESIVTISIGYSV---LRKGVRG- 347

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
                   ++ +AD+A+Y +K +G+N+V  +  ++  + 
Sbjct: 348 ------DELMKQADKAMYHSKTTGKNKVSDYRSLKTAST 380


>gi|149375546|ref|ZP_01893316.1| diguanylate cyclase [Marinobacter algicola DG893]
 gi|149360251|gb|EDM48705.1| diguanylate cyclase [Marinobacter algicola DG893]
          Length = 359

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 85/169 (50%), Gaps = 9/169 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S  ++ ++++ D L+GL N +               YN  ++++  D+D+FK++ND +GH
Sbjct: 173 SQRQLLKIAQTDTLTGLANRARLSDIFEREQQRARRYNTPMTLLALDLDHFKEVNDRYGH 232

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD  +  ++              RLGGEEF      ++ Q+   +A  +R  + ++ +
Sbjct: 233 DTGDLTLQHVARIFRECLRATDLPARLGGEEFGILLTNTNGQQGLEVAEKIRIAVASTPL 292

Query: 209 NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +++   I +T+S G+AE     + +  ++  AD+ LY AK  GRN ++
Sbjct: 293 TVNND-VIRLTLSGGVAEFGPDGDTLRQLVREADKRLYEAKDRGRNLII 340


>gi|90420618|ref|ZP_01228525.1| possible signaling protein with EAL, GGDEF domains [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335346|gb|EAS49099.1| possible signaling protein with EAL, GGDEF domains [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 808

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 85/160 (53%), Gaps = 9/160 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           I+ ++  D L+GL N  +F   L +  +     +IV  D+D FK +ND  GHPVGD ++ 
Sbjct: 373 ITHMAYHDALTGLPNRRSFQDELKARFDSAKPTTIVMIDLDRFKAVNDTLGHPVGDALLI 432

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-S 215
            ++D+L         + RLGG+E   A L   ++ +  LA   R+++E  +   ++    
Sbjct: 433 QVADRLRACCNPNDLIFRLGGDEL--AILPGDDEHSDTLA---RRVVEGFERPFTADKHR 487

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           I I  S G+A     +    ++ +AD ALY AKK+GRNR+
Sbjct: 488 ISIGCSVGLATADDVDDPDLVVRQADLALYKAKKNGRNRI 527


>gi|71909120|ref|YP_286707.1| diguanylate cyclase [Dechloromonas aromatica RCB]
 gi|71848741|gb|AAZ48237.1| diguanylate cyclase [Dechloromonas aromatica RCB]
          Length = 638

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 80/170 (47%), Gaps = 11/170 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+GL N      +L     +       LS+V  DID+FKQ+ND +GH VGD
Sbjct: 471 LQELAVRDSLTGLYNRRYLDETLEREVSRARREGIPLSLVMLDIDHFKQVNDTYGHQVGD 530

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  L+  L           R GGEEF         +   + A   R  +E   +++  
Sbjct: 531 EVLRILASTLSADIRAEDVACRYGGEEFLILLPNMPLETTMLRAQGWRSAVE--ALSVKH 588

Query: 213 GP-SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           G   I  TIS G+A    H +    +   ADQALY AK  GRN+V  F D
Sbjct: 589 GNFQITFTISLGVAAYPEHGKTPDDLTRCADQALYRAKNEGRNQVSVFFD 638


>gi|330827910|ref|YP_004390862.1| GGDEF domain-containing protein [Aeromonas veronii B565]
 gi|328803046|gb|AEB48245.1| GGDEF domain protein [Aeromonas veronii B565]
          Length = 462

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 97/196 (49%), Gaps = 18/196 (9%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125
           L+ V+I +   + L     S   EL  +  R+ + +  D L+GLLN  AF+ ++      
Sbjct: 265 LAGVLIMVAYIVQLRRAVASRTAELSRANARLEKQASTDPLTGLLNRRAFMPAMEQRLAS 324

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----A 181
               +++ FD+D+FK+ ND FGH +GD ++  L+  +  +      + R+GGEEF     
Sbjct: 325 GAPCALLLFDVDHFKETNDRFGHGIGDLLLEKLATTVTNLLPEEALLARIGGEEFCLLLP 384

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG----IAERCHKEPISTII 237
            A L  +E+ A  +  +    I    ++ SSG  + ++IS G     AER  +     ++
Sbjct: 385 LATLAETEEWAERICLE----INRQTLHTSSG-EVTLSISTGAVWVAAER--EADADQLL 437

Query: 238 YRADQALYVAKKSGRN 253
            +AD  +Y AK  GRN
Sbjct: 438 RQADALMYQAKGLGRN 453


>gi|320156043|ref|YP_004188422.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
 gi|319931355|gb|ADV86219.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
          Length = 515

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 76/154 (49%), Gaps = 13/154 (8%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+  LN  AF   L    EK    S++ FDID+FKQIND +GH  GD+V+  ++D   
Sbjct: 362 DPLTHTLNRRAFRHDLTQMLEKQAAFSLIGFDIDHFKQINDRYGHLGGDQVLIDVAD--- 418

Query: 164 VVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            V GT +  G    R GG+EF   +  +   E       +R  IE +         IH T
Sbjct: 419 -VIGTVLQEGDRFYRFGGDEFGILSSVTERSELECYLEAIRDRIEKTACYYQD-TEIHCT 476

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +S G A  C +E +  ++ + D  LY +K  GRN
Sbjct: 477 LSIGAAVHCDEE-LEDLVQKMDVQLYRSKDKGRN 509


>gi|261339974|ref|ZP_05967832.1| GGDEF domain protein [Enterobacter cancerogenus ATCC 35316]
 gi|288317892|gb|EFC56830.1| GGDEF domain protein [Enterobacter cancerogenus ATCC 35316]
          Length = 709

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 125/253 (49%), Gaps = 40/253 (15%)

Query: 33  IFFSIFIATVIFIANI-FLFYIGLTP--FYGLEYIL--------------VENLSLVIIS 75
           +F +  +A ++  A I  + Y G++   F+ +E+I+              V  L L+ I 
Sbjct: 171 VFINRIVAALVMGAAICAMHYTGMSAAHFHEMEHIVPGGISELGLSIWVSVTTLCLLGIM 230

Query: 76  ITISLLLGYISGSILKELFISYNRISQL-SRIDCLSGLLN------------HSAFISSL 122
           + ISL+  +   + L +     NR  +L +R D L+GL N            HSA ++  
Sbjct: 231 LIISLVDSHWRTARLTDNLQQLNRQLELQARFDALTGLANRHQMDIRLQDCLHSALLN-- 288

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
               +  ++VF DID+FK++ND +GH VGD+++  ++ ++       + + RLGG+ F  
Sbjct: 289 ---KKSFAVVFLDIDHFKRVNDTWGHHVGDELLIAVAQRITARLTREVTLARLGGDAFIL 345

Query: 183 AALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRA 240
                 +++   L   L  ++E+ +  +S  G ++ +T+SAG++    H E +  +  +A
Sbjct: 346 LLPDYDDEK---LNLHLTPLLEDIRRPLSVCGHTLSVTLSAGVSLYPEHGETLHELKLKA 402

Query: 241 DQALYVAKKSGRN 253
           D A+   K+ GRN
Sbjct: 403 DAAMQHIKREGRN 415


>gi|223983595|ref|ZP_03633776.1| hypothetical protein HOLDEFILI_01057 [Holdemania filiformis DSM
           12042]
 gi|223964440|gb|EEF68771.1| hypothetical protein HOLDEFILI_01057 [Holdemania filiformis DSM
           12042]
          Length = 639

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 8/162 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFF--DIDYFKQINDNFGHPVGD 152
           NR+ +L+++D ++GLL  +A    I  L          FF  DID FKQ ND +GH  GD
Sbjct: 474 NRLQELAQLDEMTGLLTKTATRRHIEHLLKEKPDQLYAFFILDIDTFKQANDLYGHAFGD 533

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            VI   +  L   F     +GR+GG+EFA              A  L K +  +  + + 
Sbjct: 534 SVIEQFAAVLRTQFREQDMIGRIGGDEFAVFIPVPDLAWVKTRAQQLLKALHYT--HTAM 591

Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           G S  ++ S GIA    + +   T+  +AD ALY++KK+GRN
Sbjct: 592 GNSWGVSASIGIALTSREAQDFETLYRKADDALYMSKKNGRN 633


>gi|209550668|ref|YP_002282585.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209536424|gb|ACI56359.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 601

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 102/222 (45%), Gaps = 24/222 (10%)

Query: 51  FYI---GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107
           FY+   GL  F G E+ +  ++ L+   +    ++       L+E   S  RI  ++  D
Sbjct: 122 FYVDAEGLPSFIGAEWDVTADV-LLNAELAGQKMVAEARALALEE---SNARIEHVADHD 177

Query: 108 CLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
            L+GL N       L           L ++  D+D FKQIND+ GH  GD V+   + ++
Sbjct: 178 YLTGLPNRRLLDKRLAELPADRSITTLGVLHLDLDQFKQINDSHGHAAGDAVLRAAALRI 237

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND----LRKIIENSQINISSGPSIH 217
                    V R+GG+EF    +  S+  E  ++ +D    LRK I   Q  + SG SI 
Sbjct: 238 TAAIPANGMVARVGGDEFVIVLVNFSDLAELKLITDDLQRRLRKKIRFGQEMLQSGASIG 297

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++ S     R       +++  +D ALY AKK GRNRV  F+
Sbjct: 298 VSWSGDRRAR-------SLLAESDLALYQAKKLGRNRVEFFT 332


>gi|148262278|ref|YP_001228984.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter uraniireducens Rf4]
 gi|146395778|gb|ABQ24411.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter uraniireducens Rf4]
          Length = 309

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 16/180 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           ++  EL  S   +  LS  D L+ L N    + +L           + LS+V  DID+FK
Sbjct: 126 ALQDELKRSNELLKDLSNTDPLTHLHNRRYLMEALEREFLRASRKGDGLSLVLLDIDHFK 185

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GHP GD V+  ++  L  +        R GGEEF      +S   A   A   R
Sbjct: 186 KVNDTYGHPEGDNVLVAVASLLQNMVRRYDVSARYGGEEFVVVLPETSLHHALQFAERCR 245

Query: 201 KIIENSQINISSGPSIH---ITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
             ++    +IS G ++    IT+S G+A       + + ++  +AD+ALY AK+ GRNRV
Sbjct: 246 VAVQ----DISFGGALKGLTITVSLGVASYPSGKVDCVDSLFRQADEALYRAKQGGRNRV 301


>gi|119470913|ref|ZP_01613497.1| sensory box/GGDEF/EAL domain protein [Alteromonadales bacterium
           TW-7]
 gi|119445935|gb|EAW27215.1| sensory box/GGDEF/EAL domain protein [Alteromonadales bacterium
           TW-7]
          Length = 695

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 80/140 (57%), Gaps = 4/140 (2%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           +EK ++ F D+D FK+IND+ GH  GDKV+   +++L         +GRLGG+EF   + 
Sbjct: 295 DEKAAVFFLDLDDFKKINDSLGHEAGDKVLIETANRLQRALRKADTIGRLGGDEFIILSK 354

Query: 186 GSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAE-RCHKEPISTIIYRADQA 243
           G S Q+ A+   +  K+++N +   +  G  + +TIS G+A    + + +S ++  AD A
Sbjct: 355 GISTQQNAVGIAE--KLLQNFREPFTIEGRELMLTISIGVAMFPDNGKSVSDLLRNADTA 412

Query: 244 LYVAKKSGRNRVVCFSDIEN 263
           +Y AK  GRN    F++  N
Sbjct: 413 MYQAKALGRNTYSFFTNQMN 432


>gi|94263455|ref|ZP_01287268.1| GGDEF:GAF:Histidine kinase, HAMP region [delta proteobacterium
           MLMS-1]
 gi|93456185|gb|EAT06324.1| GGDEF:GAF:Histidine kinase, HAMP region [delta proteobacterium
           MLMS-1]
          Length = 595

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 93/188 (49%), Gaps = 22/188 (11%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIV 132
           LL  ++  I  E+ ++  R+ +L+  D L+GL +     +++  + +          S++
Sbjct: 409 LLAAVAEQI--EITLANARLYRLAITDGLTGLYSKRYCETAINKFRDTHAADQGRLFSVL 466

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF---AAAALGSSE 189
             D+D+FK +ND  GHPVGD+V+  L++ +           R GGEEF    A  + ++E
Sbjct: 467 MLDLDHFKLVNDTHGHPVGDEVLIQLAELIRGSIRQDDIACRYGGEEFIILVAEGIKAAE 526

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITIS---AGIAERCHKEPISTIIYRADQALYV 246
           Q    +A  L + +        SG  +  TIS   AG  E  H +  + +I  ADQALY 
Sbjct: 527 Q----IAERLCRAVAEHVFRCRSGLELRCTISIGGAGFPE--HGQNAAEVIAAADQALYQ 580

Query: 247 AKKSGRNR 254
           AK  GRNR
Sbjct: 581 AKNGGRNR 588


>gi|28875472|gb|AAO59956.1| putative sensor kinase [uncultured bacterium]
          Length = 237

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 7/160 (4%)

Query: 107 DCLSGLLNHSAFISSLGS------YNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      +L +      +N+  +S +  DID+FK +ND FGH  GD VI  ++
Sbjct: 73  DPLTGLRNRHHLEDTLRTQMGQAIHNQTPISCLMIDIDHFKDVNDRFGHEAGDGVIKGVA 132

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +           R GGEEF     G  E+EA  +A D+   +    +   +    HI 
Sbjct: 133 AIIQRAIRDSGMAFRYGGEEFLVLLSGMGEEEANRMATDIYNGVHALTLRFGTSDISHID 192

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +S G+A          ++  AD ALY AK+ GR+R+V F 
Sbjct: 193 VSIGVASYPQHAQSDNLLRAADVALYRAKELGRSRIVSFG 232


>gi|114049157|ref|YP_739707.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113890599|gb|ABI44650.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 608

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 90  LKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDN 145
           L++  +S N ++  ++  D L+GL N   F  +L +  ++   + ++  DIDYFK  ND 
Sbjct: 426 LQQALVSVNTQLRVMAETDELTGLSNRRPFTQTLEALLQQRAPIGLLMLDIDYFKSYNDT 485

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM--FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           +GH  GD+ +  ++  L+     P+   + R+GGEEFA      +  +   +AN L   +
Sbjct: 486 YGHLEGDEALRRVAQALMQSGILPLDSLLARIGGEEFAIILEHITPIQLEAIANQLCYQV 545

Query: 204 ENSQINISSGPSIHITISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I  SS P   IT+S G         +K  +S ++ RAD  LY AK  GRN VV  S
Sbjct: 546 AALDIPHSSSPKGKITLSIGGVYLPLATINKLTLSEVLRRADICLYRAKDQGRNTVVIDS 605

Query: 260 D 260
           +
Sbjct: 606 N 606


>gi|115524460|ref|YP_781371.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
 gi|115518407|gb|ABJ06391.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
          Length = 779

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 93/182 (51%), Gaps = 15/182 (8%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148
           +  ++ +L+  D L+GL N S F        E+        +++  D+D FK++ND+ GH
Sbjct: 331 AEEQLQKLAYYDPLTGLPNRSLFRRKAEDALERYLHGGGEAAVMLLDLDRFKEVNDSLGH 390

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA---AAALGSSEQEAAILANDLRKIIEN 205
             GD+++  ++  +  V G    + RLGG+EF      ALG +E EA  LA D+   + +
Sbjct: 391 AAGDELLDKVAHVISRVLGNRHLLARLGGDEFGIIVTDALGRAEIEA--LARDIITAV-S 447

Query: 206 SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             I +S G  + I  S GIA      + IS ++  AD ALY AK++GR R   F +  + 
Sbjct: 448 EPIALSRG-EVAIGTSVGIAGIPRDGDTISDLLRNADLALYRAKEAGRGRFQFFEEDMST 506

Query: 265 TC 266
           T 
Sbjct: 507 TV 508


>gi|323493103|ref|ZP_08098235.1| diguanylate cyclase/phosphodiesterase domain 2 [Vibrio brasiliensis
           LMG 20546]
 gi|323312664|gb|EGA65796.1| diguanylate cyclase/phosphodiesterase domain 2 [Vibrio brasiliensis
           LMG 20546]
          Length = 325

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 17/165 (10%)

Query: 99  RISQLSRIDCLSGLLNHSA----FISSLGSYNEKLS-IVFFDIDYFKQINDNFGHPVGDK 153
           ++++L+  D L+G+LN  A    F + L   + K S ++F DID FK +ND  GH  GD+
Sbjct: 152 QLAKLANSDPLTGVLNRIAIEDEFDNQLQKNHHKTSALIFIDIDNFKNVNDQSGHQAGDR 211

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-----ILANDLRKIIENSQI 208
           ++  +++ LV V      VGRLGG+EF     G  +QE A      L N++   I NS  
Sbjct: 212 LLIEIAEGLVRVAPNNARVGRLGGDEFVILC-GDCKQEQARQLCTTLLNEITPSI-NSNN 269

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           N   G SI   + +G++        + I  RADQA+Y  K +G+N
Sbjct: 270 NAEIGFSIGACLFSGVSHE-----FADIYQRADQAMYDVKNNGKN 309


>gi|315637576|ref|ZP_07892783.1| diguanylate cyclase/phosphodiesterase [Arcobacter butzleri JV22]
 gi|315478167|gb|EFU68893.1| diguanylate cyclase/phosphodiesterase [Arcobacter butzleri JV22]
          Length = 851

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 73/157 (46%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N   F       I     +N   +++  D D FK INDNFGH  GD ++  ++
Sbjct: 436 DPLTDLFNQRVFNDMMRYEIKRAQRHNYSFALMVIDCDNFKPINDNFGHSFGDTLLQTVA 495

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GG+EF       +E+EA I+AN + K +   +I    G +I IT
Sbjct: 496 STLKKEKRDEDIVARYGGDEFTIILPECTEKEAMIVANRISKKMATEKIVAPDGSNIGIT 555

Query: 220 ISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           IS GI     H      +   AD  +Y AK+ G+N +
Sbjct: 556 ISIGICVYPTHTTSQKDMFIIADSMMYQAKEEGKNAI 592


>gi|171318694|ref|ZP_02907837.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
 gi|171096100|gb|EDT41026.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
          Length = 469

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 81/178 (45%), Gaps = 8/178 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S L+EL  +   +  L+  D L+G  N   FI  + +            S++  D+D FK
Sbjct: 291 SALQELQRTNQTLEHLAATDPLTGASNRRKFIECVEAEIARAKRDGAPFSLLALDLDNFK 350

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH VGD+V+       +        V R+GGEEF      +    A  +   +R
Sbjct: 351 WINDCYGHQVGDRVLQGFVQTCLDAIRPYDDVARVGGEEFMVLLPRADPDAALAVGERIR 410

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
             I  +      G S+ IT+S GI++       I  ++  ADQ LY AK+ GRN V+ 
Sbjct: 411 SAIAGTPFAREIGRSVSITVSIGISQFGKDGHTIDALLRAADQRLYRAKRRGRNCVIA 468


>gi|188581410|ref|YP_001924855.1| diguanylate cyclase [Methylobacterium populi BJ001]
 gi|179344908|gb|ACB80320.1| diguanylate cyclase [Methylobacterium populi BJ001]
          Length = 417

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 24/184 (13%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R++ LS  D L+ L N   F   LG+        +  L ++  DID+FK++ND  GH  G
Sbjct: 221 RLTVLSETDSLTALSNRRHFTERLGAAWGLAGEQDGWLGVILIDIDHFKRLNDTAGHAEG 280

Query: 152 DKVIAFLSDQL---VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           D+ +  ++  L   V  +G      R GGEEFA    G+   +A  +   +R  + +  I
Sbjct: 281 DRCLVAVAAALQTSVEAWGG--LAARYGGEEFAVLLPGADPVQARAVGEVVRAAVADLAI 338

Query: 209 N----ISSGPSIHITISAGI-AERCHKE----PISTIIYRADQALYVAKKSGRNRVVCFS 259
                +++ P   +T+S G+ A R         +S ++  AD ALY AK  GRNRV  F 
Sbjct: 339 RHPGLVANRP---VTVSVGVTAARGRTRDFGIQVSDLLKAADFALYAAKNEGRNRVESFL 395

Query: 260 DIEN 263
              N
Sbjct: 396 PAAN 399


>gi|153801619|ref|ZP_01956205.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|153829652|ref|ZP_01982319.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|229527813|ref|ZP_04417204.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           cholerae 12129(1)]
 gi|124122875|gb|EAY41618.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|148874880|gb|EDL73015.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|229334175|gb|EEN99660.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           cholerae 12129(1)]
          Length = 359

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 78/164 (47%), Gaps = 19/164 (11%)

Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+G LN       L          NE   I   DID+FK +ND +GH  GDKVI
Sbjct: 178 LSTRDALTGTLNRHQLDGFLKKCLRHRQLANESAVIAVIDIDHFKSVNDLYGHDTGDKVI 237

Query: 156 AFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
                Q+V +  T       + RLGG+EF      +S  +A ++ + +   I+ +     
Sbjct: 238 T----QVVEIMNTHCRELDLLFRLGGDEFLLLFENTSLTDATLVMSHIGCRIQQTHYPYH 293

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +     +T+S G+AE    +       RADQALY +KK G+NRV
Sbjct: 294 AK----VTVSVGLAEALRTDDPEQWFKRADQALYHSKKMGKNRV 333


>gi|113970559|ref|YP_734352.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|114047793|ref|YP_738343.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113885243|gb|ABI39295.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113889235|gb|ABI43286.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 312

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 16/169 (9%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            +L+  D L+ L N  AF + LG        + LS + FDID+FK+IND++GH +GD  +
Sbjct: 142 ERLAHTDELTQLYNRRAFFN-LGRQIAQQAQQPLSFIMFDIDHFKRINDHWGHAIGDAAL 200

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++        +   + RLGGEEF      +  ++A  +A  +R   +   +++  G S
Sbjct: 201 IHIARLTQTKLSSSDILARLGGEEFGLILPNTHHEQAWQVAEAIRHGFDTQPLHL-DGHS 259

Query: 216 IHITISAGIA-----ERCHKEPISTIIY----RADQALYVAKKSGRNRV 255
           I  T S GI+     +  H +   T++      ADQA+  AK++GRN+V
Sbjct: 260 IRCTASFGISSIILPKINHLDEAQTLLESLFNNADQAMMQAKRAGRNQV 308


>gi|330950714|gb|EGH50974.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 334

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L   D L+GL N   F   L            +LS++  D+DYFK  NDNFGH  GD
Sbjct: 165 LQRLMNSDGLTGLSNRRHFDEYLELEWRRAVREQTQLSLLMIDVDYFKPYNDNFGHLEGD 224

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  ++  +      P     R GGEEFA     +S   A +LA  LR+ +    I ++
Sbjct: 225 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVSGMNIPHM 284

Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257
           +  P   +T+S G+A    +  + +  +I  AD+ LY AK +GRN+V  
Sbjct: 285 APAPGSSLTVSIGVATVTPQLGMHSRQLILDADKGLYQAKNNGRNQVAA 333


>gi|308048690|ref|YP_003912256.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
 gi|307630880|gb|ADN75182.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
          Length = 530

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 84/179 (46%), Gaps = 12/179 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           +EL  +  ++ QL+  D L+ + N   F   L S           L+++  D+DYFK  N
Sbjct: 339 EELDEANRKLIQLTLTDSLTEVGNRRQFDQWLSSEWDAGRRSGRPLTLMLVDVDYFKSFN 398

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DN+GH  GDK +  ++  L      P   V R GGEEF A  L  +     +LA  L   
Sbjct: 399 DNYGHRAGDKALRCIAATLRERLHRPRDLVARYGGEEF-AILLPETSDNVPLLAQALCDA 457

Query: 203 IENSQINISSGPSIH-ITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +    I    G     +T+S G+A      ++    ++  ADQALY AK  GRNRV+ +
Sbjct: 458 VAELGIRHECGGETGVVTVSIGVATLVPAVEQQAEHLVELADQALYRAKAEGRNRVISY 516


>gi|326316035|ref|YP_004233707.1| response regulator receiver modulated diguanylate cyclase
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372871|gb|ADX45140.1| response regulator receiver modulated diguanylate cyclase
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 334

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 83/180 (46%), Gaps = 11/180 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           +EL ++  R++++  +D L+GL+N   F   L S           L+++  D+D+FK+ N
Sbjct: 144 EELHLANQRLNEMVEVDTLTGLVNRRGFDRILHSEILAARRDGMPLTLMLCDLDHFKRFN 203

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D  GH  GD  +  +   L  V   P  V  R GGEEFA     +    A   A  L K+
Sbjct: 204 DAVGHVQGDACLREVGRLLKEVCVRPRDVAARYGGEEFALILPNTPRSGAMTFARALGKL 263

Query: 203 IENSQINISSGP-SIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFS 259
           +    I     P    +T+S GI      +  S   ++ RAD+ALY AK  GR R   F 
Sbjct: 264 VSQRAIAHPDSPLGASLTVSGGITTCVPDDSTSAEAMLMRADEALYAAKAQGRARFFSFE 323


>gi|253996466|ref|YP_003048530.1| PAS/PAC/GAF sensor-containing diguanylate cyclase [Methylotenera
           mobilis JLW8]
 gi|253983145|gb|ACT48003.1| diguanylate cyclase with PAS/PAC and GAF sensors [Methylotenera
           mobilis JLW8]
          Length = 481

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 21/183 (11%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
           +   ++  L+  D L+G+ N S F ++L          ++ L++++ DID+FK IND+ G
Sbjct: 138 VEEQKLRSLASNDTLTGIRNRSYFNANLPEAMARSKRSDKNLALMYLDIDHFKSINDSLG 197

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-----AALGSSEQEAAILANDLRKI 202
           H  GD ++   + +L         V RLGG+EF       A L    + A  + N+L   
Sbjct: 198 HEAGDSLLKEFATRLKATLREADIVSRLGGDEFTVIIEGIATLDDVSKVATNIINEL--- 254

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN--RVVCFS 259
              ++ N    P+  IT S GIA    +      ++  AD+A+Y AK SGRN  +++ F 
Sbjct: 255 ---NRGNWLDTPNFKITSSIGIAIYDGRVIDADKLVALADKAMYKAKHSGRNNFKILRFD 311

Query: 260 DIE 262
           DIE
Sbjct: 312 DIE 314


>gi|171320408|ref|ZP_02909444.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
 gi|171094358|gb|EDT39429.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
          Length = 520

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 93/205 (45%), Gaps = 17/205 (8%)

Query: 68  NLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           + ++ I S    L LG++  S+L     ++   +   +  L+R D L+GL N      +L
Sbjct: 303 DRAIPIGSAMAVLALGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRMLDVTL 362

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGR 174
                +       LS++F D+D+FK+ ND  GH  GD  +A +   +      P  +  R
Sbjct: 363 AREWRRAARSQHALSLLFVDVDHFKRYNDTQGHQAGDDALAAVGRCIAGCLRRPADYAAR 422

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--- 231
            GGEEF           A  +A  +R  I +  I   +G S  +T S G+   C+ E   
Sbjct: 423 YGGEEFVVVLPNVDTNGAVTIAEAIRTGILDLGIRHDTGVSGRLTASIGVTT-CYPERDD 481

Query: 232 PISTIIYRADQALYVAKKSGRNRVV 256
            I   +  AD ALY AK  GRN+VV
Sbjct: 482 SIQAALKLADDALYRAKACGRNQVV 506


>gi|158334888|ref|YP_001516060.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acaryochloris marina MBIC11017]
 gi|158305129|gb|ABW26746.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Acaryochloris marina MBIC11017]
          Length = 705

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 20/167 (11%)

Query: 107 DCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+GL + + F+  L           N   +++F D D FK IND+ GH +GD+++  +
Sbjct: 264 DHLTGLPSRALFLDQLHRTLTRVNRQTNYLFAVLFLDCDRFKVINDSLGHAIGDQLLIEV 323

Query: 159 SDQLVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILANDLRKIIENSQINISSG 213
           + +L         + RLGG+EFA      A    +EQ A+ L  +L K  E        G
Sbjct: 324 AQRLTTALRPGDVIARLGGDEFAILLENIAGQDQAEQVASRLNRELEKAFE------LQG 377

Query: 214 PSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259
            +++I+ S GIA      P +  + R AD A+Y AK  G++R V F 
Sbjct: 378 HTVYISASIGIALNSDHSPQAENLLRDADNAMYRAKALGKSRYVVFE 424


>gi|111025522|ref|YP_707942.1| hypothetical protein RHA1_ro08740 [Rhodococcus jostii RHA1]
 gi|110824501|gb|ABG99784.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 466

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 11/153 (7%)

Query: 107 DCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N +       A + +      K++ +  D+D FK +ND  GH VGD  +  L+
Sbjct: 310 DPLTGLPNRALVHQQIDAALDTAPGSEPKVAALLIDLDEFKTLNDRLGHAVGDDALIRLA 369

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHI 218
           +QL  V      V R+GG+EF     G++  E +I    L   I + Q+   S+G  +  
Sbjct: 370 EQLQSVVRPTDTVARIGGDEFLIVCPGTTSVEESIA---LATRITDLQVGADSAGRPLRF 426

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           T S GIA    +E   T+I RAD A+Y AK +G
Sbjct: 427 TASVGIALAGPQETRQTLIRRADAAMYHAKATG 459


>gi|77748680|ref|NP_643206.2| response regulator [Xanthomonas axonopodis pv. citri str. 306]
          Length = 494

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 16/200 (8%)

Query: 71  LVIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
           +V+ ++  +LLLG   ++    L+ +  +  ++S  + +D L+G+ N  AF   L     
Sbjct: 294 IVVAALGCTLLLGVGIWLDLQ-LRRMHRNEAKLSTEAWVDALTGIANRRAFDHRLSRALQ 352

Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEE 179
                   LS++  D+D+FK  ND +GH  GD  +  ++  +      +     R GGEE
Sbjct: 353 DAVRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCSRRSEDLAARYGGEE 412

Query: 180 FAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIAE-RCHKEPIS--T 235
           F      +    A  LA+ +R  + E   +++SS  S H+T+S G A     + P+S   
Sbjct: 413 FGMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGAATFEPGEAPLSPNA 472

Query: 236 IIYRADQALYVAKKSGRNRV 255
           I++ AD ALY AK+ GRNR 
Sbjct: 473 IVHDADSALYRAKQKGRNRT 492


>gi|86146254|ref|ZP_01064579.1| GGDEF family protein [Vibrio sp. MED222]
 gi|85835965|gb|EAQ54098.1| GGDEF family protein [Vibrio sp. MED222]
          Length = 477

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 97/198 (48%), Gaps = 16/198 (8%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQ-------LSRIDCLSGLLNHSAFISSLG 123
           + ++  TISLLL YI    ++E    Y  I +       L+  D L+ + N  AF   L 
Sbjct: 281 IALVGTTISLLLSYIVKLQVQEKVRLYKMIDERTEELRFLANHDSLTEIYNRRAFNKVLD 340

Query: 124 SY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                ++  S++ FD+D FK IND FGHP GD ++  +   +         V R+GG+EF
Sbjct: 341 KAIQGDKPFSLIGFDVDKFKGINDQFGHPAGDALLVHVIQLISGSLKEGDHVFRMGGDEF 400

Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINIS-SGPSIHITISAGIAERCHKEPISTIIY 238
               + SS  E   LA  L  I++  S+ +    G  +  T+S G   R  KE I  ++ 
Sbjct: 401 ---GIISSVIEHDALARYLECILDTVSESHCEHKGQLLSCTLSIGATIRS-KEDIEELLQ 456

Query: 239 RADQALYVAKKSGRNRVV 256
           + D  LY++K +GRNRV 
Sbjct: 457 KTDSMLYLSKSNGRNRVT 474


>gi|118579804|ref|YP_901054.1| response regulator receiver modulated diguanylate cyclase
           [Pelobacter propionicus DSM 2379]
 gi|118502514|gb|ABK98996.1| response regulator receiver modulated diguanylate cyclase
           [Pelobacter propionicus DSM 2379]
          Length = 454

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 12/174 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           SY+    +  ID LSGL N           +  +G ++ +L+++F D+D FKQ+ND  GH
Sbjct: 280 SYSLAKDMLFIDDLSGLYNQRYLEVALEREMKRIGRFSSQLAVLFLDMDSFKQVNDTHGH 339

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VG +V+  +   L +       V R GG+E+ A  + +S   AA +A  +R ++ +   
Sbjct: 340 LVGSRVLKEMGTLLRLSVRDVDVVIRYGGDEYTAILVETSPAIAANVAERIRSMVASHVF 399

Query: 209 NISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFS 259
               G  I +T S G +  C  E   T   ++  ADQA+Y  K  G+N VV F+
Sbjct: 400 LADEGYDIRLTCSIGYS--CCPEDALTKEELLEMADQAMYTGKGRGKNCVVRFT 451


>gi|294626301|ref|ZP_06704904.1| response regulator [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292599447|gb|EFF43581.1| response regulator [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 515

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 16/200 (8%)

Query: 71  LVIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
           +V+ ++  +LLLG   ++    L+ +  +  ++S  + +D L+G+ N  AF   L     
Sbjct: 315 IVVAALGCTLLLGVGIWLDLQ-LRRMHRNEAKLSTEAWVDALTGIANRRAFDHRLSRALQ 373

Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEE 179
                   LS++  D+D+FK  ND +GH  GD  +  ++  +      +     R GGEE
Sbjct: 374 DAVRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCSRHSEDLAARYGGEE 433

Query: 180 FAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIAE-RCHKEPIS--T 235
           F      +    A  LA+ +R  + E   +++SS  S H+T+S G A     + P+S   
Sbjct: 434 FGMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGAATFEPGEAPLSPNA 493

Query: 236 IIYRADQALYVAKKSGRNRV 255
           I++ AD ALY AK+ GRNR 
Sbjct: 494 IVHDADSALYRAKQKGRNRT 513


>gi|297582608|ref|YP_003698388.1| diguanylate cyclase [Bacillus selenitireducens MLS10]
 gi|297141065|gb|ADH97822.1| diguanylate cyclase [Bacillus selenitireducens MLS10]
          Length = 335

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 82/172 (47%), Gaps = 11/172 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL +S  +    +  D L+GL N ++        I+         +++  D+D+FK+IN
Sbjct: 166 RELELSLEQQRDAASTDRLTGLRNRASLEDLLEMEINRAVQEEAVFAVILMDMDHFKRIN 225

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD  +  L++ L+        VGR GGEEF      + E+ +  LA   R  +
Sbjct: 226 DTHGHQAGDSCLKELAELLIRQSRPTDIVGRWGGEEFLIICPNTDERGSKDLAESFRLAV 285

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              +   +       T S G+A     +   T+I RAD+ALY AK +GRNRV
Sbjct: 286 SAYRFTKTGAQ----TASFGVAAFMTGDDGETLIGRADRALYRAKGAGRNRV 333


>gi|118474590|ref|YP_891782.1| GGDEF family protein [Campylobacter fetus subsp. fetus 82-40]
 gi|118413816|gb|ABK82236.1| ggdef family protein [Campylobacter fetus subsp. fetus 82-40]
          Length = 385

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 19/211 (9%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSI---LKELFISYNRISQLSRIDCLSGLLNHSA 117
           LE +   N  LVI++  +  L   +   +    KEL  +   + +LS  D L+ + N   
Sbjct: 179 LEMMSKRNKDLVIVNNELLELKKDLENKVQDRTKELIEANENLEKLSMTDQLTEMPNRRH 238

Query: 118 FISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
            + +L          +  LS++  D+DYFK++NDN+GH  GD ++  ++  L     T  
Sbjct: 239 AMKTLDLLWKENLDSDRGLSVLMIDLDYFKEVNDNYGHDAGDYILRLVARTLKESVRTDD 298

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            V RLGG+EF      +  + +  +AN+L K I + ++      +     SA I   C  
Sbjct: 299 IVCRLGGDEFLVICPNTMLEGSIQVANNLLKDIHSLKV---KTKNCEWNGSASIGLACMS 355

Query: 231 EPI---STIIYRADQALYVAKKSGRNRVVCF 258
             I   S +I  AD  +Y AK+SG+N   CF
Sbjct: 356 PDIKNYSKLIKLADDKVYEAKQSGKN---CF 383


>gi|90420816|ref|ZP_01228722.1| putative response regulator with GGDEF domain [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335107|gb|EAS48868.1| putative response regulator with GGDEF domain [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 455

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 104/216 (48%), Gaps = 22/216 (10%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH---S 116
           G+   +V   S+ +++   + LL     + + EL  +  R+ +L+R D L+G+ N    +
Sbjct: 231 GIGATVVARRSMTLLA-QKAFLLDLRDKTRVAELAAANGRLEELARTDPLTGVANRRWMT 289

Query: 117 AFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKV---IAFLSDQLVVVFGTPM 170
             + +L S        +++  DID FK +ND  GH  GD+    +A L    V   G   
Sbjct: 290 EILDALWSAQRTRVSGALLMCDIDDFKNLNDRLGHGEGDRCLIEVAKLIGDCVRRDGDK- 348

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCH 229
            V R GGEEF         + A + A  +R+ I ++ + N  S  +  +TIS G+A    
Sbjct: 349 -VARYGGEEFLVLLRDVDTRAALVTAERIRRRIGDAGLANPGSRVASRVTISIGVA---A 404

Query: 230 KEP------ISTIIYRADQALYVAKKSGRNRVVCFS 259
            EP         +  RAD ALY+AK+SGRNRVV + 
Sbjct: 405 LEPGDGDVTPQQLQERADAALYLAKQSGRNRVVLYG 440


>gi|323488742|ref|ZP_08093983.1| GGDEF/HD domain protein [Planococcus donghaensis MPA1U2]
 gi|323397621|gb|EGA90426.1| GGDEF/HD domain protein [Planococcus donghaensis MPA1U2]
          Length = 372

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 85/164 (51%), Gaps = 7/164 (4%)

Query: 104 SRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           S  D L+ L N   F   I +  S +  ++I+  D+DYFK  ND  GH  GD V+  +  
Sbjct: 201 SNQDPLTQLANMRFFRKEIQTFVSNDVPIAIIMLDVDYFKSYNDAHGHQKGDAVLRSIG- 259

Query: 161 QLVVVFGTPM-FVGRLGGEEFAAA-ALGSSEQEAAILANDLRKIIENSQINISS-GPSIH 217
           QL+     P  FV R GGEEF    A    E++A  +A  +R  IE    +     P  +
Sbjct: 260 QLMKDNTRPNDFVARYGGEEFIICIAQPFDERKALEIAEKVRTEIERYPFDGQELQPKGN 319

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +T+S GI+     + +  +I  ADQAL+ +K+SGRN+V  + ++
Sbjct: 320 LTVSLGISLYSANKTLDQLIGEADQALFQSKRSGRNQVTVYIEV 363


>gi|310778241|ref|YP_003966574.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
 gi|309747564|gb|ADO82226.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
          Length = 568

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 75/144 (52%), Gaps = 2/144 (1%)

Query: 116 SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
           S  ++ L  ++  L  + FDID+FK INDN+GH  GD ++  +S  +          GR 
Sbjct: 423 SKELTKLKRHHLSLCCMIFDIDHFKSINDNYGHLAGDYILEAISKIIHDKIRNEDIFGRY 482

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPIS 234
           GG+EF  A   +  +   I+A  + K I      I +  SI +T+S GI+      + I 
Sbjct: 483 GGDEFLIALPETELKAGKIVAEKIIKTIAEETF-IFNDTSIKVTLSIGISALDDSFDTIE 541

Query: 235 TIIYRADQALYVAKKSGRNRVVCF 258
             I  +D ALY+AKK+GRNRV  +
Sbjct: 542 AAIKNSDSALYLAKKNGRNRVEVY 565


>gi|156976945|ref|YP_001447851.1| sensory transduction protein kinase [Vibrio harveyi ATCC BAA-1116]
 gi|156528539|gb|ABU73624.1| hypothetical protein VIBHAR_05730 [Vibrio harveyi ATCC BAA-1116]
          Length = 393

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 137/309 (44%), Gaps = 66/309 (21%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIF---------------FSIFIATVIFIAN----- 47
           FL+++L +++  +S +  T+++  S+F               F  +   ++FI       
Sbjct: 85  FLAVFLFNKEGFDSKATLTYVLMLSMFVFWSYVTLTYYVEGGFEEWTNGILFIVPTVSKL 144

Query: 48  ---IFLFYIGLTPFYGLEYILVENLSLVIISITISLLL-----------GYISGSI--LK 91
              + L+ IG+  F G   ILV   + +I ++T S ++            YIS ++  L 
Sbjct: 145 PLVLVLYCIGIVCFLG---ILVLKKNKIIHAMTYSAMVLASATFIFFDVQYISSTMFTLT 201

Query: 92  ELFI---SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
            L I   S +   QL+  D L+ + +  A    L     K +I   D+D+FK+ ND +GH
Sbjct: 202 GLLIIIYSTSASHQLAFTDSLTLIPSRRALDLDLKHMGRKFTIAMLDVDHFKKFNDTYGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII----- 203
             GD V+  ++ +L+   G      R GGEEF     G   ++      ++R++I     
Sbjct: 262 DTGDDVLKMVASRLMKTQGGAK-AYRFGGEEFTIVFKGKYTEDCEAHLEEVRELIAQYDM 320

Query: 204 ----------ENSQINISSG------PSIHITISAGIAE-RCHKEPISTIIYRADQALYV 246
                     +N Q     G       ++ +T S G+A+ R  + P + +I  AD ALY 
Sbjct: 321 ILRDQDNRPDDNKQGRKKRGNAESKQKTVSVTASFGVADSRSARNP-ADVIKLADDALYK 379

Query: 247 AKKSGRNRV 255
           AKK+GRN V
Sbjct: 380 AKKAGRNCV 388


>gi|146281321|ref|YP_001171474.1| hypothetical protein PST_0935 [Pseudomonas stutzeri A1501]
 gi|145569526|gb|ABP78632.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 261

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 79/162 (48%), Gaps = 8/162 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           + + S +D L+G+ N       L   +E+       L++V  DID FK IND++GH VGD
Sbjct: 96  LREASMLDSLTGIANRRLLTERLREESERAKRYGRPLALVMLDIDRFKIINDDYGHDVGD 155

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  +   +          GR GGEEF       + Q A  +   L   I    + ++ 
Sbjct: 156 RVLIEVVRVMESEIREHDLCGRWGGEEFLILMPECTAQMAQTVLGRLGASIAALGVRVNE 215

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
              + +T S GIAE   +E  S  I RAD AL  AK+SGRNR
Sbjct: 216 -DLLGVTASMGIAELRPEETYSNTINRADLALLRAKRSGRNR 256


>gi|148555835|ref|YP_001263417.1| diguanylate cyclase/phosphodiesterase [Sphingomonas wittichii RW1]
 gi|148501025|gb|ABQ69279.1| diguanylate cyclase/phosphodiesterase [Sphingomonas wittichii RW1]
          Length = 547

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 87/172 (50%), Gaps = 20/172 (11%)

Query: 101 SQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           S+L+  D L+GLLN  A          +SLG     ++++  D+D+FK +ND  GH  GD
Sbjct: 96  SELATSDPLTGLLNRRALGESGARLVDASLGQ-RRPVAMLMIDLDHFKSVNDLHGHLAGD 154

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LAND-LRKIIENSQIN 209
           +++   S  +V          RLGG+EFA A     +Q AA+  +A+  L +I E   I 
Sbjct: 155 QLLRAASAAIVAPLPPHALAARLGGDEFACAFAFDPDQPAAVDHVADAILARIAEPFLIG 214

Query: 210 ISSGPSIHITISAGIAER---CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              G    I  S GIA     C    I T++ R+D ALY AK++GRN+   F
Sbjct: 215 ---GVEARIGASLGIARTEAGCRT--IDTLMRRSDIALYAAKRAGRNQRAWF 261


>gi|323495037|ref|ZP_08100126.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
 gi|323310694|gb|EGA63869.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
          Length = 487

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 88/168 (52%), Gaps = 10/168 (5%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVG 151
           + ++   +L+  D ++GLLN     + L +  ++   +++  FDID FKQIND +GH VG
Sbjct: 323 VEHDYFKELAATDPMTGLLNRRGLQAYLKNNTQQGVYVALGVFDIDDFKQINDTYGHDVG 382

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINI 210
           D+VI +++ Q+     +     R+GGEEF     G++ E     +     ++ ++S   +
Sbjct: 383 DEVIKYMAKQISASIRSSDAAARIGGEEFVVYMTGNAIEPLKRSMLRVRNEVCQHSASAL 442

Query: 211 SSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            SG     T+S G  + E  +      +   AD+ LY AK SG++++V
Sbjct: 443 ESG----FTVSGGAQVIEAQNAGSFDLLFKAADEKLYHAKNSGKDQLV 486


>gi|317403736|gb|EFV84221.1| hypothetical protein HMPREF0005_02802 [Achromobacter xylosoxidans
           C54]
          Length = 525

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 14/182 (7%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYF 139
           GS L E      R  QL+  D L+GL N        S  +++  S   +++I+  D+D+F
Sbjct: 346 GSALTETSRMLARAQQLAYHDPLTGLCNRVLFGELASQTLAAAASARRQVAILAIDLDHF 405

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND  GH +GD V+ F++ ++   F     + R GG+EF      S  + A   AN+L
Sbjct: 406 KDVNDTQGHAMGDAVLEFVAQRMKTTFRASDIIARFGGDEFFVLMDDSDAETALSAANNL 465

Query: 200 RKIIENSQINISS--GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + +      + +  G S+ I+I            +++++  AD ALY AK +GR + + 
Sbjct: 466 IRSLSRPYPGVEATVGASVGISIFP-----ADGSDLASLLSEADAALYAAKDAGRGQALR 520

Query: 258 FS 259
            S
Sbjct: 521 RS 522


>gi|229137427|ref|ZP_04266038.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST26]
 gi|228645985|gb|EEL02208.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST26]
          Length = 569

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTNNHTQDEMRQLATSVLSCFQAP- 253

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306


>gi|167746443|ref|ZP_02418570.1| hypothetical protein ANACAC_01153 [Anaerostipes caccae DSM 14662]
 gi|167653403|gb|EDR97532.1| hypothetical protein ANACAC_01153 [Anaerostipes caccae DSM 14662]
          Length = 348

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 3/175 (1%)

Query: 85  ISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI-VFFDIDYFKQI 142
           +S ++ ++     NR +S L+  D L+GLL+  AF+          ++ V  DID FK +
Sbjct: 172 LSAAVSRQELQDENRSLSTLANYDQLTGLLSRHAFLKRAEHCQASSAVLVLSDIDDFKVV 231

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GDK+++  ++ +    G  + V R GGEEF      +   +  +   +L   
Sbjct: 232 NDTWGHSCGDKILSETAELIRSFLGGNVDVCRWGGEEFVFLFRDTPLNDVLVKLQELCDT 291

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +            +HIT++ G++          II  AD+ +Y  K  G+NRVVC
Sbjct: 292 VAGHTF-CCDDKKLHITMTFGVSPSGEGASPEEIIALADRQMYKGKTEGKNRVVC 345


>gi|153831983|ref|ZP_01984650.1| ggdef family protein [Vibrio harveyi HY01]
 gi|148871981|gb|EDL70804.1| ggdef family protein [Vibrio harveyi HY01]
          Length = 513

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 13/163 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           + +++ +D L+ LLN   F  +L  Y   + K S+V FDID FK IND +GH  GD+ + 
Sbjct: 353 LKRMAELDPLTQLLNRRVFNDNLLHYINGDVKFSLVGFDIDRFKLINDKYGHLAGDEALL 412

Query: 157 FLSDQLV---VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            ++ +LV   ++ G   +  R GG+EF   +  + ++E A   + LR I+ +S  +  S 
Sbjct: 413 HVT-KLVNANLLDGDRFY--RAGGDEFCILSQVTDKEELATYLDKLRGIVASSPFDYEST 469

Query: 214 PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
           P   I  S  I    HK E   ++ ++ D  LY +KK+GRN V
Sbjct: 470 P---IICSLSIGAAVHKGEDPESLFHKMDVQLYQSKKNGRNSV 509


>gi|120556297|ref|YP_960648.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Marinobacter aquaeolei VT8]
 gi|120326146|gb|ABM20461.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter aquaeolei VT8]
          Length = 867

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 16/176 (9%)

Query: 102 QLSRI---DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           QL R+   D L+GL N           I         L++VF D+D FK++ND  GH VG
Sbjct: 314 QLERVAHYDLLTGLPNRLLLGDRLKQAIRQTRRRGMHLAVVFIDLDGFKKVNDQHGHAVG 373

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DK+++ LS ++  V      + RLGG+EF A  +   +   ++    L ++IE +   + 
Sbjct: 374 DKLLSVLSRRMTQVLREDDTLARLGGDEFVAILVDLPDSSVSVPI--LERLIEVASQPVP 431

Query: 212 SGPSI-HITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENN 264
            G ++  ++ S G++     E I    ++ +ADQA+Y AK++G+NR   F D E +
Sbjct: 432 IGDALCEVSASIGVSYYPQGEDIDADQLLRQADQAMYRAKQAGKNRYHVF-DTEKD 486


>gi|288957253|ref|YP_003447594.1| two-component response regulator modulated diguanylate cyclase
           [Azospirillum sp. B510]
 gi|288909561|dbj|BAI71050.1| two-component response regulator modulated diguanylate cyclase
           [Azospirillum sp. B510]
          Length = 350

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 93/194 (47%), Gaps = 17/194 (8%)

Query: 78  ISLLLGYISGSILKELFISYNR--------ISQLSRIDCLSGLLNHSAFISSLGS----- 124
           ++ L  Y   + L++     NR        +++L+ +D L+G+ N   F+    +     
Sbjct: 155 VTALRAYADMAALEQRLTETNRALEEATVRLNRLATLDPLTGVWNRRRFLDLAAAELARA 214

Query: 125 --YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
             Y   L++   D+D F+ +ND  G+ +GD V+  +  ++         + R GG+EF  
Sbjct: 215 RRYGRPLALFLLDLDGFEAVNDAHGNTIGDAVLRAVVKRVRAALRISDHIARSGGDEFVV 274

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRAD 241
               +    AA++A  +R  +  S +      +I +T S GIA     EP +   ++RA+
Sbjct: 275 LLPETDAAGAAVVAERVRAALAGSPVAAEER-AIPVTASIGIASWLPDEPGVEQTLHRAE 333

Query: 242 QALYVAKKSGRNRV 255
           +AL+ AK+ GR+RV
Sbjct: 334 RALHAAKRGGRDRV 347


>gi|224475887|ref|YP_002633493.1| hypothetical protein Sca_0394 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420494|emb|CAL27308.1| putative membrane protein [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 355

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 99/208 (47%), Gaps = 20/208 (9%)

Query: 63  YILVENLSLVIISITISLLLGYISGSI----LKELFISYNRISQLSRIDCLSGLLNHSAF 118
           Y L E + L+ IS  ++     I+ SI    +   F    R     R D L+GL N   F
Sbjct: 147 YTLQEIIYLIPISFVVT-----IASSITFVDIWRFFTLVQRYESEDRYDYLTGLGNVKEF 201

Query: 119 ISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-M 170
              L    ++       L ++  DID FK +ND F H  GD V+  +S QL++ +  P +
Sbjct: 202 DRYLNKMTDEADEKSTSLGLLLIDIDGFKDVNDAFTHRSGDAVLKQIS-QLLINYVPPNV 260

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            + R GGEEF+   LG S  ++  LA  +R  +E S  ++     I +++S GI      
Sbjct: 261 RIFRNGGEEFSVVVLGYSLDQSVKLAESIRAGVEQSTFHLPDKEVIKLSVSIGIGYLTAD 320

Query: 231 EPIS--TIIYRADQALYVAKKSGRNRVV 256
           +  S   +   AD  L++AK  GRN+V+
Sbjct: 321 DYKSQRKVFKDADDMLHMAKNEGRNQVM 348


>gi|75908637|ref|YP_322933.1| response regulator receiver modulated diguanylate cyclase [Anabaena
           variabilis ATCC 29413]
 gi|75702362|gb|ABA22038.1| response regulator receiver modulated diguanylate cyclase [Anabaena
           variabilis ATCC 29413]
          Length = 684

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 84/179 (46%), Gaps = 11/179 (6%)

Query: 87  GSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           G IL  L   +NR +  L+ ID L+ + N       L  Y        + +S    ++D 
Sbjct: 506 GRILNRL--EHNRWLQNLAEIDTLTLVANRRKSTQELNHYLQWCHTHQQTMSFAVVELDG 563

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
            KQIN N+GH VGD++++ L + L  +F +   VGR GG EF     G ++ E      +
Sbjct: 564 LKQINYNYGHEVGDRILSQLGELLRQMFHSQDVVGRWGGTEFILGMAGITKGEGVRRLGE 623

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           L K     +   +S  S H T SA + E          +Y+ AD  L  AK SGR+RV+
Sbjct: 624 LLKTFRQIEFITTSNQSFHATFSAAVVEYPQDGDTLEALYQAADIVLNQAKTSGRDRVL 682


>gi|297568083|ref|YP_003689427.1| response regulator receiver modulated diguanylate cyclase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296923998|gb|ADH84808.1| response regulator receiver modulated diguanylate cyclase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 337

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 90/173 (52%), Gaps = 13/173 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ +++ +D L+G+ N   F   L           + ++I  FDIDYFK  ND+FGH  
Sbjct: 154 RRLQRMALVDGLTGIANRRNFDDFLDREWRRCQRDGQPIAICLFDIDYFKLYNDSFGHLQ 213

Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAA--ILANDLRKIIENSQ 207
           GD+V+  ++  L  V   P   V R GGEEF    L  S+QE A  ++   + KI E + 
Sbjct: 214 GDEVLKQVATALQQVASRPGDLVARFGGEEF-VFVLSGSDQEGAQLVVQRAIEKIRELAV 272

Query: 208 INISSGPSIHITISAGI-AERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCF 258
           ++  S  + H+T+S GI A R H      ++   AD+ALY AK+   N+VV  
Sbjct: 273 LHPQSPVNEHLTVSCGISAVRPHPGLYPNLLLDCADKALYEAKQIRNNQVVTL 325


>gi|291613922|ref|YP_003524079.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Sideroxydans lithotrophicus ES-1]
 gi|291584034|gb|ADE11692.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Sideroxydans lithotrophicus ES-1]
          Length = 1149

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 100/209 (47%), Gaps = 13/209 (6%)

Query: 60  GLEYILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           G EYI  E++ +  +S     ++ Y++    + E  ++  RI +L   D L+GL N +  
Sbjct: 680 GTEYI--ESVLISPVSQVDGRVMNYLAIKEDITEKRLTEERIEKLEHFDHLTGLPNRTQL 737

Query: 119 -------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  +S      E+++++F D+D+FK IND  GH +GD+++  ++ +L         
Sbjct: 738 NERFKYALSLAQRSGEQMTVMFLDLDHFKDINDTLGHSIGDQLLMDVAKRLKETLRDEDT 797

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK- 230
           V R GG+EF     G+ E  AA +A  L + +  SQ        +  T S GIA   H  
Sbjct: 798 VSRQGGDEFILILPGTDENGAAHVAAKLMEAV--SQAFQFEQHELVATCSIGIAIYPHDG 855

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           E   T+   AD A+Y  K  GRN    F+
Sbjct: 856 ENFETLSKNADTAMYRVKHDGRNGFCFFT 884


>gi|325294061|ref|YP_004279925.1| diguanylate cyclase [Agrobacterium sp. H13-3]
 gi|325061914|gb|ADY65605.1| diguanylate cyclase [Agrobacterium sp. H13-3]
          Length = 383

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 13/209 (6%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL-KELFISYNRISQLSRIDCLSG 111
           I L+ F+  +Y     L+  I    ++L       S+L  ++ ++ +R  Q +  D L+ 
Sbjct: 162 IELSEFFESDYAFYMQLAASIFGFLLAL-------SVLASQISVTVDRHLQAAEHDPLTD 214

Query: 112 LLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
           +LN   F   +  +       +++  DID+FK+IND++GH  GD V+  LSD L     +
Sbjct: 215 VLNRRGFDRRVPDFRSGTPIGAVIACDIDHFKRINDDYGHAAGDIVLIGLSDLLRKSARS 274

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
              V R GGEEF     G +   A  LAN +R  + +     S G +  +T S G++   
Sbjct: 275 DALVARFGGEEFVVFLPGHTAAAAGHLANAMRLNLLSLDWR-SRGVATKVTASFGVSAVA 333

Query: 229 HKE-PISTIIYRADQALYVAKKSGRNRVV 256
             +  I   I RAD +LY AK+ GRN+VV
Sbjct: 334 RGDHSIHDAIKRADDSLYAAKRGGRNQVV 362


>gi|307611531|emb|CBX01208.1| hypothetical protein LPW_29071 [Legionella pneumophila 130b]
          Length = 371

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 108/225 (48%), Gaps = 27/225 (12%)

Query: 48  IFLFYIGLTPFYGL--EYIL-VENLS-LVIISITISLLLGYISGSILKELFISYN----- 98
           +F FYI   P Y +  EY+  ++N + L I ++  ++L  ++  ++  EL +        
Sbjct: 143 VFEFYI---PIYSISQEYVFFLDNTNHLFIFALIFTVLYHFLVQNLQYELLLKEQNYLLI 199

Query: 99  ----RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147
               +   LS  D L+ L N S F + L +         E +++ F D+D FK IND +G
Sbjct: 200 ADKEKFHYLSHHDSLTNLPNRSYFHAHLQTLLENTDTTKEAITLYFMDLDKFKPINDEYG 259

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+++   S +L   F    F+ RLGG+EF A  +       A  A  LR   E  Q
Sbjct: 260 HEFGDQLLLLTSKRLQSCFRKNDFIARLGGDEFTAIIVHKPLDHIAD-ALTLRIEQEFEQ 318

Query: 208 INISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKS 250
             + +G +IH TIS GIA   R  K     ++  AD+A+Y  K+ 
Sbjct: 319 PFVINGQTIHCTISVGIANYPRNAKNA-EDLLKWADKAMYDNKRK 362


>gi|291537408|emb|CBL10520.1| diguanylate cyclase (GGDEF) domain [Roseburia intestinalis M50/1]
          Length = 547

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 14/212 (6%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           Y L   + E      ++  I+ LL Y+  +  KE      ++ Q++  D L+G+ N  A 
Sbjct: 340 YSLRVHIQEKHETGELAAGINELLDYVEQADRKEKE-RQQKLLQMAENDPLTGIKNKKAI 398

Query: 119 ISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPM 170
              + S        +E+++  F DID F+  N N+GH  GD VI F++  L   + G   
Sbjct: 399 EKEMLSMVQRAVESHEQITFGFVDIDDFRDYNTNYGHQEGDAVIQFVAQTLKENIHGA-- 456

Query: 171 FVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAGIA-ERC 228
            VGR+GG+EFA    G  E E     A+ + +I+    +N  +G  + +  S GI   + 
Sbjct: 457 -VGRIGGDEFAFCYAGELEPERIRHNADKILEILRTQHVNEQTGEVLPVPCSIGIVMSQG 515

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                + +I RAD A+Y AK++G+N  V   D
Sbjct: 516 DTLDYTQLIRRADLAMYQAKENGKNTFVLNVD 547


>gi|261251380|ref|ZP_05943954.1| GGDEF family protein [Vibrio orientalis CIP 102891]
 gi|260938253|gb|EEX94241.1| GGDEF family protein [Vibrio orientalis CIP 102891]
          Length = 351

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 74/151 (49%), Gaps = 7/151 (4%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D ++G  N     + L    +K     IV  DID FK +ND++GH VGDKVI  + D + 
Sbjct: 179 DAMTGAYNRHELPTILTRTLKKHPCSCIVIIDIDNFKSVNDHYGHDVGDKVIIRIVDIIR 238

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   + RLGG+EF     G  +     L N L K I  ++        + +TIS+G
Sbjct: 239 AHTSDEELLFRLGGDEFLLVVQGQEQDSVLTLMNRLNKKIRQAEY----PQDLSMTISSG 294

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           IA+    E I   + RAD ALY +K  GR+R
Sbjct: 295 IAQSQPFEEIKEWMKRADLALYQSKHQGRDR 325


>gi|261251157|ref|ZP_05943731.1| GGDEF family protein [Vibrio orientalis CIP 102891]
 gi|260938030|gb|EEX94018.1| GGDEF family protein [Vibrio orientalis CIP 102891]
          Length = 655

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 22/181 (12%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S LKE+     R+  L+  D L+GL N +     L          NE +++++ D+D FK
Sbjct: 481 SNLKEM----ERLEYLAHHDSLTGLANRAKLYRVLDETLTIERDTNEGVALLYLDLDGFK 536

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL- 199
            +ND +GH  GD+V+  ++++L+ +F +   V RL G+EF      ++  + + +A +L 
Sbjct: 537 GVNDTYGHDAGDEVLKQVAERLLSMFTSHDLVARLSGDEFVVLVTKTTVTKISAIAEELI 596

Query: 200 ----RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               R I+   ++ +  G SI +  SA ++E      +   +  AD A+Y AK SG+ R 
Sbjct: 597 DVIQRDIVYRGRV-LKVGASIGVHYSANLSEN-----LDQWLKAADTAMYQAKSSGKGRY 650

Query: 256 V 256
           V
Sbjct: 651 V 651


>gi|162447311|ref|YP_001620443.1| membrane-anchored GGDEF domain-containing protein [Acholeplasma
           laidlawii PG-8A]
 gi|161985418|gb|ABX81067.1| membrane-anchored GGDEF domain protein [Acholeplasma laidlawii
           PG-8A]
          Length = 358

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 14/161 (8%)

Query: 107 DCLSGLLNHSAFI-----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GL N  +        +  +YN  + ++ FDID FK+ NDN+GH  GD+V+   +  
Sbjct: 202 DFLTGLPNRRSLFEYAQKDTFKAYNY-MGLMMFDIDRFKKYNDNYGHLNGDQVLTEFARL 260

Query: 162 LVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
           L V   T P+   R GGEEF        + E   LAN ++  ++  ++ +   P   IT 
Sbjct: 261 LEVFSKTYPVKFYRYGGEEFIGITYNLDKLEIINLANHIK--MDTFKLKV---PFEQITT 315

Query: 221 SAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           S G  + ++     I+ +I +AD+ALY  K SGRN+V+ + 
Sbjct: 316 SIGVTVTDKTDNIDINDLIEQADKALYSGKNSGRNKVIFYE 356


>gi|117925126|ref|YP_865743.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Magnetococcus sp. MC-1]
 gi|117608882|gb|ABK44337.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Magnetococcus sp. MC-1]
          Length = 754

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 11/174 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ +L+  D L+ L N   F   L         + +++++ F D+D FKQ+ND  GH  G
Sbjct: 307 KLERLAYYDALTQLPNRMLFHDRLEHEFYNAQRHRKQVAVFFIDLDRFKQVNDTLGHSAG 366

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  ++ +L         V R+GG+EF       S+ E+  +A   RK++E  Q +IS
Sbjct: 367 DELLQHVAQRLEGCVRAADTVARMGGDEFTVILADISDNES--VARVARKVLEELQKSIS 424

Query: 212 -SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             G  I +  S GIA    +   + T+   AD A+Y AK+SGR     FS+  N
Sbjct: 425 IKGHDIFVGASIGIALYPDNGNDVETLTKNADMAMYRAKESGRGNYKFFSEEMN 478


>gi|332527195|ref|ZP_08403267.1| GGDEF domain-containing protein [Rubrivivax benzoatilyticus JA2]
 gi|332111619|gb|EGJ11600.1| GGDEF domain-containing protein [Rubrivivax benzoatilyticus JA2]
          Length = 390

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 90/195 (46%), Gaps = 9/195 (4%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128
           +LV ++  ++LL G   G +L     +   + +L+  D L+G LN  A    L     + 
Sbjct: 187 TLVAVAAYVALL-GAGFGFVLACTERASRSLERLASHDHLTGALNRQAAEPLLAQALRRA 245

Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                 ++ V  D+D FKQ+ND  GH  GD+V+   +  +         + RLGGEEFA 
Sbjct: 246 RRGGGCVAFVLIDLDRFKQVNDRHGHVFGDEVLRRFAQTVRTRLRASDLLVRLGGEEFAL 305

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-AD 241
               S    A  +   LR       ++  +G +  ++ SAGIA           +YR AD
Sbjct: 306 VLPDSDAAGARRVLEQLRGDCREMGLHTEAGQACPVSFSAGIALSPQGRVDGEALYRAAD 365

Query: 242 QALYVAKKSGRNRVV 256
            ALY AK+ GR+R V
Sbjct: 366 GALYAAKRGGRDRAV 380


>gi|218709662|ref|YP_002417283.1| GGDEF family protein [Vibrio splendidus LGP32]
 gi|218322681|emb|CAV18857.1| GGDEF domain protein [Vibrio splendidus LGP32]
          Length = 652

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 8/132 (6%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           ++   D+D FK++ND +GH +GD+V+  ++ ++     T   + R GGEEF     G+ +
Sbjct: 522 TLAILDLDQFKRVNDTYGHDIGDQVLVEVAKRIERALSTNDVLARWGGEEFVLLLAGTQD 581

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-----ADQAL 244
            +  +    +R+ I +  I   SGP + +T S G       + +++  Y+     AD AL
Sbjct: 582 PDEQL--EMIRQTIADQTIETYSGP-LALTTSIGATIHLTYQELNSSTYKQHLKSADDAL 638

Query: 245 YVAKKSGRNRVV 256
           Y AK+SGRN+VV
Sbjct: 639 YQAKQSGRNQVV 650


>gi|182419165|ref|ZP_02950419.1| signal transduction protein containing diguanilate
           cyclase/phosphodiesterase domain [Clostridium butyricum
           5521]
 gi|237669193|ref|ZP_04529175.1| diguanylate cyclase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377120|gb|EDT74690.1| signal transduction protein containing diguanilate
           cyclase/phosphodiesterase domain [Clostridium butyricum
           5521]
 gi|237655080|gb|EEP52638.1| diguanylate cyclase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 363

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 12/204 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSI---LKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           YILVE+     ++  + + L  I+  I   ++  F+ Y ++  L++ D L G+ N   F+
Sbjct: 152 YILVEHKMFNFMTTELKIFLKSIANQIAIIIENSFL-YRQLENLTQTDSLMGIYNRKYFL 210

Query: 120 SSLG-----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
             L      + N K ++V  DID FK +ND +GH  GD+V+   +  L         + R
Sbjct: 211 DFLEKSIKENENRKFAVVMVDIDDFKNVNDTYGHQFGDEVLKNTAKILKKWTEENDLLAR 270

Query: 175 LGGEEFAAAALGSSEQEAAILAND-LRKIIENSQINISSGPSIHITISAGIAERCHK-EP 232
            GGEE         + E+     + +RK +ENS++N   G S  +T S G+A    + + 
Sbjct: 271 YGGEELIMYISDIKDAESVFNKIEIIRKELENSKVN-CYGLSDSVTASFGMAFYPEESKD 329

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
           I  +I  AD  LY +K+ G+N+V+
Sbjct: 330 IKQLIKVADDLLYESKRQGKNKVL 353


>gi|149911672|ref|ZP_01900281.1| hypothetical protein PE36_11472 [Moritella sp. PE36]
 gi|149805253|gb|EDM65269.1| hypothetical protein PE36_11472 [Moritella sp. PE36]
          Length = 597

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 74/153 (48%), Gaps = 7/153 (4%)

Query: 107 DCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D ++ L+N +     +GS          +   D+D FK IND +GH  GD VI   +D L
Sbjct: 440 DSMTQLMNKAYLRQQMGSRIKCNAPDTYLGMIDLDDFKTINDTYGHLFGDHVIIKTADML 499

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
              F       R GGEEFA       EQ+A    ++ R  IE + I  S      +T+S 
Sbjct: 500 KHYFNHKAVTSRYGGEEFAVLFNAVDEQQAFKKLDEFRCGIE-TMIVSSGDKKCQVTVSI 558

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G A+   +  I   IY AD+ALY+AK + +N+V
Sbjct: 559 GFAKL--RTSIDMTIYDADKALYLAKNNSKNKV 589


>gi|146281532|ref|YP_001171685.1| hypothetical protein PST_1148 [Pseudomonas stutzeri A1501]
 gi|145569737|gb|ABP78843.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 376

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 104/250 (41%), Gaps = 29/250 (11%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL----------G 83
            F++F+   IFI    L ++       L+Y L   +    +++  S+LL          G
Sbjct: 117 MFAVFLPPKIFIRYASLAFLSFVGLAALDYYLERPMDTTALALQASVLLVTLIWMCLFAG 176

Query: 84  YISGSILKELFISY-------------NRISQLSRIDCLSGLLNHSAFIS------SLGS 124
           ++     +     Y              ++  L+  D L+GL N   F+       S   
Sbjct: 177 HVHRLRQRMRQRRYALQAHQDTLRGMMRQLEDLASTDELTGLYNRQRFLRIAEGDLSRLR 236

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
              +  +   D+D+FK+IND  GH  GD+V+   +            + R GGEEF    
Sbjct: 237 KGHQSGLALIDLDHFKRINDIHGHATGDRVLQTFAKVARSCLRDDDVLARYGGEEFVLLL 296

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +  ++       LR+   +++   +   + H+++S G+      + +   + RAD+AL
Sbjct: 297 PETDAEQFRACCERLREAFASAEPEDAEIAAGHLSLSIGLTLLNAGDELDAALQRADEAL 356

Query: 245 YVAKKSGRNR 254
           Y AK++GRNR
Sbjct: 357 YRAKRAGRNR 366


>gi|87199053|ref|YP_496310.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87134734|gb|ABD25476.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 769

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 88/175 (50%), Gaps = 13/175 (7%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKL----SIVFFDIDYF 139
           GS + E   S  +I+ L+R D L+GL N      +LG    Y+EK     + +  D+D F
Sbjct: 322 GSDVTEQRESAEKIAYLARYDTLTGLPNRLMLTEALGDAMGYSEKWRSNCAFLMIDLDRF 381

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
           K +ND  GH VGD+++A +SD++  +       GRLGG+EFA      ++ Q  A LA+ 
Sbjct: 382 KAVNDTLGHLVGDQLLAMVSDRMTRIIKDGEVCGRLGGDEFAVVVRDVADSQRIAELADA 441

Query: 199 LRKIIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSG 251
           +  I   SQ        +++  S G  I  R     + T++  AD ALY AK  G
Sbjct: 442 I--IATLSQPYEVDHHMLYVGASVGSAIGPR-DGATVETLLRNADLALYRAKDEG 493


>gi|326796526|ref|YP_004314346.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326547290|gb|ADZ92510.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 386

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 8/155 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV--V 164
           D L+GL +  A      +  +  +I   D+D+FK+ ND +GH +GD+V+  ++  L    
Sbjct: 224 DELTGLASRRALNEDFMALPKHYAIAMVDVDHFKKFNDTYGHDMGDEVLRRVAKILAEGC 283

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---SSGPSIHITIS 221
            +G+   V R GGEEF+    G    EA      +R  IE  +I +    S   + +T S
Sbjct: 284 YYGS---VYRYGGEEFSILYRGKKVAEAQDELESIRSWIEEEKIEVIHRDSKKYVSVTAS 340

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+A    +      + +AD++LY AK+ GRNR++
Sbjct: 341 FGLAVGSDQNEGFETLKKADESLYQAKRKGRNRLI 375


>gi|322835534|ref|YP_004215560.1| diguanylate cyclase [Rahnella sp. Y9602]
 gi|321170735|gb|ADW76433.1| diguanylate cyclase [Rahnella sp. Y9602]
          Length = 375

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 9/165 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF---ISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPV 150
           +++  L+  D L+G+ N       +  L +  E+     S++  D+DYFK+ ND++GH  
Sbjct: 206 SKLDNLAHYDPLTGVANRRQLDNQLEQLIAQTERQGGTFSLIMIDVDYFKKYNDHYGHQA 265

Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI- 208
           GD  +  +++    V   P   V R GGEEF      ++  +A ++A  +R+ +  + I 
Sbjct: 266 GDTCLVGIAECFKQVVRQPADLVARYGGEEFVILLHSATANDAEVVAERIRQSVTQAAIP 325

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +  S  +  +T+S GI +         ++ RAD ALY AK +GRN
Sbjct: 326 HALSQVADTVTVSQGIMQWSPGMTSLELLKRADGALYDAKHAGRN 370


>gi|258655404|ref|YP_003204560.1| diguanylate cyclase/phosphodiesterase [Nakamurella multipartita DSM
           44233]
 gi|258558629|gb|ACV81571.1| diguanylate cyclase/phosphodiesterase [Nakamurella multipartita DSM
           44233]
          Length = 814

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 19/174 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
           N++ + +  D L+GL N + F        E+       LS++F D+D FK +ND  GHPV
Sbjct: 365 NQLHRQAFQDILTGLPNRALFTDRAAHALEQHRQSMRPLSLLFVDLDDFKAVNDTLGHPV 424

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI---LANDLRKIIENSQ 207
           GD+++  ++++L         V R GG+EFA  A G       +   L   LR      +
Sbjct: 425 GDELVIRVAERLRGAIRASDTVARFGGDEFAVLAEGEDADGVELGSRLVEALRPRFVLGE 484

Query: 208 INISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCF 258
             +S G SI      GIAE   + P  T   +  RAD A+Y AK++G+ ++  +
Sbjct: 485 HGLSIGASI------GIAEVPAEHPTPTLDDLFSRADIAMYAAKRAGKGQIALY 532


>gi|261404238|ref|YP_003240479.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Paenibacillus sp. Y412MC10]
 gi|261280701|gb|ACX62672.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Paenibacillus sp. Y412MC10]
          Length = 672

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 90/173 (52%), Gaps = 6/173 (3%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFIS--SLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +F   + + +L+  D ++GL N +         +  +K++I+F D+D FK IND  GH V
Sbjct: 233 MFFDRHVLEKLAYQDTITGLPNRNEMNRFFRTNAETDKITILFLDLDQFKAINDTLGHNV 292

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD ++  +  +L     +   V R+GG+EF      S    A  LA+D+ + I+  ++  
Sbjct: 293 GDLLVHEVGKRLRQFIRSGQQVFRIGGDEFLVILKQSDPNYAQRLADDILQQIK--KVYH 350

Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             G  +++T+S GI+    H    +T++  AD A+Y AK  G+N+  C  D E
Sbjct: 351 IDGNELYVTVSIGISIGSVHSSDRTTLLKNADTAMYKAKGLGKNQ-QCLYDEE 402


>gi|91224732|ref|ZP_01259992.1| c-di-GMP phosphodiesterase A-related protein [Vibrio alginolyticus
           12G01]
 gi|91190278|gb|EAS76547.1| c-di-GMP phosphodiesterase A-related protein [Vibrio alginolyticus
           12G01]
          Length = 786

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 124/256 (48%), Gaps = 30/256 (11%)

Query: 29  IYFSIFFSIFIA---TVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLLL 82
           ++  + FS  +A   T+  I  +   Y+ L P   L+  L E   N    I  +  +  +
Sbjct: 257 VWLELAFSFGVAAFFTITLIILVLYRYV-LRPVSRLDKQLNELESNQRDNIEKLETNDEI 315

Query: 83  GYISG---SILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFFD 135
           G +S     + +EL + Y +  +L+  D L+ L N   F       L S ++ L +V+ D
Sbjct: 316 GRLSARFFDMYEELNVIYKKTKRLAETDHLTQLANRHRFHELATRELISPSQFLWVVYVD 375

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVV-------FGTPMFVGRLGGEEFAAAALGSS 188
           +D FK +ND +GH +GD ++   S  +          + +P F  RL G+EF  A L SS
Sbjct: 376 LDNFKYVNDKYGHELGDNLLKVFSSHIKNACQKFSHDYNSPCFAARLSGDEF--AILLSS 433

Query: 189 EQEAA----ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQA 243
            QE      +LA++L K I N   + S+  S  +T S GIA+       I+ ++  AD A
Sbjct: 434 NQEVKRLPDLLASELLKPISNLSSSWSN--SFPVTASVGIAQYPQDGTDIAKLLSSADAA 491

Query: 244 LYVAKKSGRNRVVCFS 259
           +Y AK++G+N+   +S
Sbjct: 492 MYQAKRAGKNQYAYYS 507


>gi|54295494|ref|YP_127909.1| hypothetical protein lpl2581 [Legionella pneumophila str. Lens]
 gi|53755326|emb|CAH16822.1| hypothetical protein lpl2581 [Legionella pneumophila str. Lens]
          Length = 371

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 108/225 (48%), Gaps = 27/225 (12%)

Query: 48  IFLFYIGLTPFYGL--EYIL-VENLS-LVIISITISLLLGYISGSILKELFISYN----- 98
           +F FYI   P Y +  EY+  ++N + L I ++  ++L  ++  ++  EL +        
Sbjct: 143 VFEFYI---PIYSISQEYVFFLDNTNHLFIFALIFTVLYHFLVQNLQYELLLKEQNYLLI 199

Query: 99  ----RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147
               +   LS  D L+ L N S F + L +         E +++ F D+D FK IND +G
Sbjct: 200 ADKEKFHYLSHHDSLTNLPNRSYFHAHLQTLLENTDTTKEAITLYFMDLDKFKPINDEYG 259

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+++   S +L   F    F+ RLGG+EF A  +       A  A  LR   E  Q
Sbjct: 260 HEFGDQLLLLTSKRLQSCFRKNDFIARLGGDEFTAIIVHKPLDHIA-EALTLRIEQEFEQ 318

Query: 208 INISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKS 250
             + +G +IH TIS GIA   R  K     ++  AD+A+Y  K+ 
Sbjct: 319 PFVINGQTIHCTISVGIANYPRNAKNA-EDLLKWADKAMYDNKRK 362


>gi|126175713|ref|YP_001051862.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|125998918|gb|ABN62993.1| diguanylate cyclase [Shewanella baltica OS155]
          Length = 160

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 64/128 (50%), Gaps = 4/128 (3%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           + +V  DIDYFK IND  GH VGD+++  +S  L         V R GGEEF      SS
Sbjct: 34  MCLVMIDIDYFKDINDTLGHNVGDRILEQVSQVLQHCVRESDVVARWGGEEFVILCQQSS 93

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
                 L   + + I+  Q       ++ +T S G+A+    EP+     RAD+ALY AK
Sbjct: 94  LPLVESLCVRIAERIKRYQFT----DNVQLTCSFGVAKLADNEPMMLCFERADRALYRAK 149

Query: 249 KSGRNRVV 256
             GRN++ 
Sbjct: 150 AQGRNQMC 157


>gi|302188295|ref|ZP_07264968.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 730

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 104/210 (49%), Gaps = 21/210 (10%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--- 115
           +G   +L  ++  + ++ T  LL+       LK    +  +I  L+  D L+GL N    
Sbjct: 245 HGAPLVLDISVEFITLNNTACLLMNARDIGALKN---AQAQIQHLAYHDPLTGLPNRALL 301

Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
               S  +S L   N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         
Sbjct: 302 LDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 361

Query: 172 VGRLGGEEFAA---AALGSSEQ---EAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
           V RLGG+EF        GS +Q   +   LA++LR ++  ++     G  + +T S G+ 
Sbjct: 362 VARLGGDEFVVLICGLEGSQDQVTRQVRELADNLRNLL--AEPMFLDGHRLQVTPSIGVV 419

Query: 226 --ERCHKEPISTIIYRADQALYVAKKSGRN 253
                   P + ++ RAD ALY AK  GRN
Sbjct: 420 LIPDDGLTP-ADLLKRADIALYRAKDCGRN 448


>gi|325680078|ref|ZP_08159645.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
 gi|324108241|gb|EGC02490.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
          Length = 364

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 28/186 (15%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVG 151
           S  ++ +++ +D L+GL N    +S L        EK  I   DID FK++ND +GH  G
Sbjct: 181 SEEKLERMAMVDNLTGLYNRHYLLSVLDRTEAVSPEKRWIALLDIDDFKKVNDTYGHNCG 240

Query: 152 DKV---IAFLSDQ-----LVVVFGTPMFV-------------GRLGGEEFAAAALGSSEQ 190
           D +   +A LS Q     +V  +G   F+              R GGEEF   ++ ++E 
Sbjct: 241 DYILHHVAELSQQVCNDCIVCRWGGEEFIILSTNFQKLSLSNRRWGGEEFIILSM-NTEH 299

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
              IL   LRK I + +     G  ++IT++ G+     +      I +AD+ LY+ KK+
Sbjct: 300 STDILET-LRKRIADEKFRF-EGCELNITVTIGVCGYDKELTNDVWISKADEKLYIGKKN 357

Query: 251 GRNRVV 256
           G+N+VV
Sbjct: 358 GKNQVV 363


>gi|239636641|ref|ZP_04677643.1| ggdef domain protein [Staphylococcus warneri L37603]
 gi|239597996|gb|EEQ80491.1| ggdef domain protein [Staphylococcus warneri L37603]
          Length = 356

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 9/168 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
           NR     + D L+GL N   F   L        +++E L ++  DID FK +ND + H  
Sbjct: 182 NRYENEDKYDYLTGLGNVKEFDRHLNQISKYTETHHESLGLLLIDIDGFKDVNDTYTHQA 241

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  +S  L         + R GGEEF+      +  ++  LA ++R+ +E S  ++
Sbjct: 242 GDAVLKQMSQLLKNYVPKQFLIFRNGGEEFSVVINDYTLDQSVKLAENIRQGVEKSSFHL 301

Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256
            +   I +++S G+      +  S   +   AD  ++VAK  GRN+V+
Sbjct: 302 PNKEVIKLSVSIGVGYLTQNDRKSQRRVFKDADDMVHVAKSEGRNKVM 349


>gi|163804161|ref|ZP_02197927.1| putative regulatory components of sensory transduction system
           [Vibrio sp. AND4]
 gi|159172023|gb|EDP56999.1| putative regulatory components of sensory transduction system
           [Vibrio sp. AND4]
          Length = 232

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 11/175 (6%)

Query: 99  RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ Q +  D L+ L N           ++  G +   ++I+  D+D+FK  NDN+GH  G
Sbjct: 55  RLQQQANEDGLTKLYNRRYIDQKLEGMVALHGRHRIPMAIILLDVDFFKLFNDNYGHTEG 114

Query: 152 DKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQIN 209
           D+ +  ++ QL + F  +  +VGR GGEEF      +  Q A   A+ ++  +++    +
Sbjct: 115 DRCLQAIASQLTMTFCRSGEYVGRYGGEEFIILLNNTDVQTAKKEADRIQVALDSLDYPH 174

Query: 210 ISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             S  +  +T+S G+   +   KE I  +    D+ALY AK  GRN     +D+E
Sbjct: 175 AYSSVASKVTVSQGVFTFQPTGKEKIEELYEMVDKALYSAKSRGRNTYTLINDVE 229


>gi|120599609|ref|YP_964183.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|146292394|ref|YP_001182818.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
 gi|120559702|gb|ABM25629.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|145564084|gb|ABP75019.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
 gi|319425694|gb|ADV53768.1| diguanylate cyclase [Shewanella putrefaciens 200]
          Length = 518

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 76/163 (46%), Gaps = 8/163 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +L+ +D L+ L N +A    +         +   L +   DID+FK IND+FGH  GDK
Sbjct: 354 QKLNLLDSLTQLPNRAALEERMELEYRNYQRHKSPLWVAVADIDHFKTINDSFGHSTGDK 413

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  ++  L        FV R GGEEF          +   L N +R+ ++N      + 
Sbjct: 414 TLQVIAMALKNSLRDTEFVARYGGEEFVLLLPDVGNGDIVQLLNRVREKVKNIPFKFKN- 472

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I +T+S G A+    E I     RAD ALY AK   R+RVV
Sbjct: 473 QRITVTVSIGAAQVMGNELIHETFERADAALYKAKHESRDRVV 515


>gi|307825254|ref|ZP_07655474.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
 gi|307733710|gb|EFO04567.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
          Length = 369

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 83/171 (48%), Gaps = 16/171 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I ++S ID L+G+ N       +G          E LS  FFDID+FK +ND  GH  GD
Sbjct: 188 IKRISYIDVLTGVNNRRFLEQRIGEELKRSQRNAEPLSCQFFDIDFFKPVNDKHGHQGGD 247

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V++ ++  +           R GGEEF A    + E +A   A  +RK I+   I ++ 
Sbjct: 248 LVLSLVAATIKHQLRDNDVFVRYGGEEFVALLSNTDEAKALETAERVRKAIQTLVIAVND 307

Query: 213 GPSIHITISAGIAE--------RCHKEPISTIIYRADQALYVAKKSGRNRV 255
             S+ +T+S G++             E  + ++  AD ALY AK +GRNRV
Sbjct: 308 -ISVSVTVSIGVSTYVPDGTSISIDGEIATRLVKSADSALYRAKHNGRNRV 357


>gi|84623432|ref|YP_450804.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84367372|dbj|BAE68530.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 569

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      SL             LS++  D+D+FKQ ND+ GH  GD ++A + 
Sbjct: 402 DALTGLYNRRYLEESLSHELARCARRGLPLSVLMLDVDHFKQFNDSQGHAGGDLLLAAVG 461

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L+    T     R GGEEF      +  +EA  +A  +R  I    ++  +     +T
Sbjct: 462 ELLLTRLRTEDVACRYGGEEFTVLLPEADGEEALRVAEQIRGYIAALAVSDEARALPKVT 521

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+A      E  +++I +AD ALY AK  GRNRV
Sbjct: 522 ASIGVASFPADGEQGASLIQKADAALYRAKHRGRNRV 558


>gi|78048604|ref|YP_364779.1| putative signal transduction protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037034|emb|CAJ24765.1| putative signal transduction protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 494

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 16/200 (8%)

Query: 71  LVIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
           +V+ ++  +LLLG   ++    L+ +  +  ++S  + +D L+G+ N  AF   L     
Sbjct: 294 IVVAALGCTLLLGVGIWLDLQ-LRRMHRNEAKLSTEAWVDALTGIANRRAFDHRLSRALQ 352

Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEE 179
                   LS++  D+D+FK  ND +GH  GD  +  ++  +      +     R GGEE
Sbjct: 353 DAVRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCSRRSEDLAARYGGEE 412

Query: 180 FAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIAE-RCHKEPIS--T 235
           F      +    A  LA+ +R  + E   +++SS  S H+T+S G A     + P+S   
Sbjct: 413 FGMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGAATFEPGEAPLSPNA 472

Query: 236 IIYRADQALYVAKKSGRNRV 255
           I++ AD ALY AK+ GRNR 
Sbjct: 473 IVHDADSALYRAKQKGRNRT 492


>gi|327479480|gb|AEA82790.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 261

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 79/162 (48%), Gaps = 8/162 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           + + S +D L+G+ N       L   +E+       L++V  DID FK IND++GH VGD
Sbjct: 96  LREASMLDSLTGIANRRLLTERLREESERAKRYGRPLALVMLDIDRFKIINDDYGHDVGD 155

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  +   +          GR GGEEF       + Q A  +   L   I    + ++ 
Sbjct: 156 RVLIEVVRVMESEIREHDLCGRWGGEEFLILMPECTAQMAQTVLGRLGASIAALGVRVNE 215

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
              + +T S GIAE   +E  S  I RAD AL  AK+SGRNR
Sbjct: 216 D-LLGVTASMGIAELRPEETYSNTINRADLALLRAKRSGRNR 256


>gi|262274875|ref|ZP_06052686.1| putative c-di-GMP phosphodiesterase A-related protein [Grimontia
           hollisae CIP 101886]
 gi|262221438|gb|EEY72752.1| putative c-di-GMP phosphodiesterase A-related protein [Grimontia
           hollisae CIP 101886]
          Length = 633

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 17/176 (9%)

Query: 101 SQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            +L++ D L+GL N   F   +  L + N  L + + DID FK IND+ GH +GD+V+  
Sbjct: 202 EKLAQFDALTGLYNRHGFSRRLVQLINSNTPLLMFYLDIDNFKNINDSLGHHIGDRVLQD 261

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP--- 214
           ++ +L         +G LGG+EFA      S  E   +AN+L + +    ++I S P   
Sbjct: 262 IAQRLRKRLPPDTILGHLGGDEFAILLPEHSSDE---VANELSRRV----VDIISQPFDL 314

Query: 215 ---SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              S ++  S G+       +   +++  AD A+Y AK+ GRNR+V ++   N   
Sbjct: 315 YHFSKYLACSIGMVRYPDDGKDARSLLQNADTAMYEAKERGRNRLVTYNQHMNKEA 370


>gi|257482072|ref|ZP_05636113.1| GGDEF [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|330987479|gb|EGH85582.1| hypothetical protein PLA107_20818 [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011458|gb|EGH91514.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 355

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 11/171 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVF--FDIDYFKQI 142
           S++ +   + +R  +LS  D L+   N  A ++SL +    ++K S+ F   D+D FK I
Sbjct: 165 SLVMQTMAASDRYRKLSETDTLTNAPNRRALVASLDNALRSDDKSSLWFAMLDLDNFKSI 224

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           NDN GH VGD V+   +  +    G   F GRLGGEEF       S   AA     +  +
Sbjct: 225 NDNHGHDVGDNVLICFATLIKNTTGLVSF-GRLGGEEFGVML---SAANAADAIAAMDHL 280

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           + ++Q + ++   +  + SAGIA     + ++ ++  AD+ LY+AK+SGR 
Sbjct: 281 LMHAQKDQTA--KMPYSFSAGIASLARAKNVNDLLKEADENLYLAKRSGRQ 329


>gi|70729416|ref|YP_259154.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5]
 gi|68343715|gb|AAY91321.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5]
          Length = 523

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 76/167 (45%), Gaps = 18/167 (10%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F  +L             LS+V  DIDYFK+ ND +GH  GD  +  ++
Sbjct: 348 DSLTGLANRRLFERALTVEFGRGARQRSPLSLVMVDIDYFKRYNDTYGHVAGDHCLTEVA 407

Query: 160 DQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             L         +  R GGEEFA     +    A  +A  +R+ +    I  S  P   +
Sbjct: 408 QALKGCCQRKADLAVRYGGEEFAVLLPDTDIHGALAMAEQIRRSVMQRNIAHSGSPVGCV 467

Query: 219 TISAGIAERCH------KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           T+S G    C+      ++ I   I RAD ALY AK +GRNR +  +
Sbjct: 468 TVSLG----CYAFVPTGRDSIEMFIERADAALYQAKATGRNRAMALA 510


>gi|27365079|ref|NP_760607.1| C-di-GMP phosphodiesterase A-like protein [Vibrio vulnificus CMCP6]
 gi|37680869|ref|NP_935478.1| c-di-GMP phosphodiesterase A-related protein [Vibrio vulnificus
           YJ016]
 gi|27361225|gb|AAO10134.1| C-di-GMP phosphodiesterase A-related protein [Vibrio vulnificus
           CMCP6]
 gi|37199618|dbj|BAC95449.1| c-di-GMP phosphodiesterase A-related protein [Vibrio vulnificus
           YJ016]
          Length = 687

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 93/171 (54%), Gaps = 12/171 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFF--DIDYFKQINDNFGHPV 150
           ++++QL+  D L+GL N S  + SL      S +E+   V F  D+D FK IND+ GH +
Sbjct: 236 SQLNQLAYFDTLTGLANRSLLLKSLNETLKESQSEQYPGVLFYLDLDRFKTINDSLGHTI 295

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD ++  ++ +L           R+GG+EFA      ++++AA  A  L  +I N   +I
Sbjct: 296 GDNLMRTIAKRLEAWLQPGEIAARIGGDEFAILIPKLNKEDAANKAKQLLTLISNP-YSI 354

Query: 211 SSGPSIHITISAGIAERCHKEPISTI--IYRADQALYVAKKSGRNRVVCFS 259
                ++ T+S GI+    K  IS+I  + +AD ALY AK +GRN+ + + 
Sbjct: 355 DDH-QLYCTVSIGISTFADK-GISSIDVLRQADTALYRAKVAGRNKYMFYE 403


>gi|15595487|ref|NP_248981.1| hypothetical protein PA0290 [Pseudomonas aeruginosa PAO1]
 gi|218889030|ref|YP_002437894.1| putative sensory box/GGDEF domain protein [Pseudomonas aeruginosa
           LESB58]
 gi|254237477|ref|ZP_04930800.1| hypothetical protein PACG_03552 [Pseudomonas aeruginosa C3719]
 gi|254243387|ref|ZP_04936709.1| hypothetical protein PA2G_04201 [Pseudomonas aeruginosa 2192]
 gi|9946134|gb|AAG03679.1|AE004467_1 hypothetical protein PA0290 [Pseudomonas aeruginosa PAO1]
 gi|126169408|gb|EAZ54919.1| hypothetical protein PACG_03552 [Pseudomonas aeruginosa C3719]
 gi|126196765|gb|EAZ60828.1| hypothetical protein PA2G_04201 [Pseudomonas aeruginosa 2192]
 gi|218769253|emb|CAW25013.1| putative sensory box/GGDEF domain protein [Pseudomonas aeruginosa
           LESB58]
          Length = 323

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 11/166 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+   N   F  S   ++ E       L+ +  D+D FK+IND FGH VGD
Sbjct: 158 LQRLATTDVLTQSSNRRYFFDSAEAAFKECRREGIPLAFLLLDVDDFKKINDRFGHQVGD 217

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  ++             GR+GGEEFA    G  EQ A  +   L++ ++  ++    
Sbjct: 218 QVLQRIAQSGSAALRRGDLFGRIGGEEFAVLLPGCDEQTARQIGERLQREVQ--RLRFQE 275

Query: 213 GP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  S  IT+S G+   +   E +  +  RAD A+Y AK+ G++ +V
Sbjct: 276 GEHSFGITVSQGLTVLQADDEGLGALYSRADAAMYSAKRQGKDCIV 321


>gi|328543003|ref|YP_004303112.1| diguanylate cyclase (GGDEF)/phosphodiesterase (EAL), with PAS
           sensor, signal transduction histidine kinase and
           methyl-accepting chemotaxis domains; membrane-associated
           protein [polymorphum gilvum SL003B-26A1]
 gi|326412749|gb|ADZ69812.1| Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL), with
           PAS sensor, signal transduction histidine kinase and
           methyl-accepting chemotaxis domains; putative
           membrane-associated protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 980

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 88/174 (50%), Gaps = 13/174 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           RI+ L+  D L+GL N   F               +L++++ D+D FK +ND  GHP GD
Sbjct: 545 RIAHLAHHDALTGLANRVLFREEACEALLRRRKARRLALLYIDLDQFKAVNDTLGHPTGD 604

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
           +++  ++ +L    G    V RLGG+EFA    G+   E A  A D  ++IE  +I    
Sbjct: 605 RLLVEVAKRLRAAVGRHDHVARLGGDEFAIMLAGNPRAEDASAAAD--RLIETIRIPYEV 662

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCF--SDIE 262
            G  I +  S GIA        + ++ + AD ALY AK+ GRN   CF  SD++
Sbjct: 663 DGNFIVVGASVGIAMAPDDGTDADVLMKHADMALYRAKQDGRN-TYCFFESDMD 715


>gi|188579454|ref|YP_001922899.1| diguanylate cyclase [Methylobacterium populi BJ001]
 gi|179342952|gb|ACB78364.1| diguanylate cyclase [Methylobacterium populi BJ001]
          Length = 516

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 107/212 (50%), Gaps = 24/212 (11%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128
           ++V++   ++++L  + G  L+        +++LS  D L+GL N   F  +  +  ++ 
Sbjct: 295 TVVLLLCGLTVVLSLLFGRELRHRAAMQAELARLSLTDALTGLPNRRRFEEAFEAAWDRA 354

Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFA 181
                 LS++  D D+FK+ ND +GH VGD+V+  L+  L      P   V R+GGEEF 
Sbjct: 355 RRTGKPLSLLVVDADHFKRYNDRYGHAVGDEVLKGLAQCLSAGVHRPDDLVARVGGEEF- 413

Query: 182 AAALGSSEQEAAI-LANDLRKIIENSQI---NISSGP---SIHITISAGIA-ERCHKEPI 233
           A  L  ++Q+ A+ +A+ + + +    +    I++G    SI +T   G A ER      
Sbjct: 414 AILLPDTDQDGAMRIASKVHEAVATVSVPSAGIAAGAVTVSIGLTTGHGSASERAE---- 469

Query: 234 STIIYR-ADQALYVAKKSGRNRVVCFSDIENN 264
              +YR AD ALY AK +GRN+  C    E  
Sbjct: 470 --ALYRAADAALYEAKAAGRNQTRCAPGSEKG 499


>gi|149194996|ref|ZP_01872089.1| signaling repeat/GGDEF domain/EAL domain protein [Caminibacter
           mediatlanticus TB-2]
 gi|149134917|gb|EDM23400.1| signaling repeat/GGDEF domain/EAL domain protein [Caminibacter
           mediatlanticus TB-2]
          Length = 444

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 99/203 (48%), Gaps = 4/203 (1%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G+ Y  +E L+  I     +++   I  S LK L  +   + + +  D L+ LLN   F 
Sbjct: 236 GINYSELEKLNRKINIEINNIIYKTILKSKLKILDKNLQNLKEKTVYDKLTSLLNREGFE 295

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                 N K   +  D+D FK IND FGH +GD+V+   + QL   F   + +GR GG+E
Sbjct: 296 ELFKEKNYKY-FMLIDLDNFKYINDTFGHDIGDEVLKEFAWQLKKHFKEDL-IGRWGGDE 353

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F  A     ++E      D+ K ++  Q+N    P   ++ S G+A   +  P+  +   
Sbjct: 354 FIIAT-NKQKKEITQHFKDINKKLKEIQLNFDKNPQKILSTSVGVATNNN-FPLEELFKN 411

Query: 240 ADQALYVAKKSGRNRVVCFSDIE 262
           AD ALY  KK+ + +V+ F DI+
Sbjct: 412 ADLALYKVKKTKKGKVLFFEDID 434


>gi|91792128|ref|YP_561779.1| ammonium transporter [Shewanella denitrificans OS217]
 gi|91714130|gb|ABE54056.1| ammonium transporter [Shewanella denitrificans OS217]
          Length = 644

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 13/178 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           ++  I+ +R+S+L++ D L+ L N   F     S         +  S++  DID+FK  N
Sbjct: 453 RQADINSHRLSRLAKTDHLTRLNNRLGFDECYDSEWLRMRREKKPFSLLLIDIDHFKLYN 512

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D++GHP GD+ +  ++  L      P     R+GGEEFA     +  +    +AND+   
Sbjct: 513 DHYGHPRGDQCLQQVALVLASTAKRPADCCARVGGEEFAILLPDTDSEAGEKIANDINIR 572

Query: 203 IENSQINISSGPSI-HITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++  +I   S P + ++T+S GIA    ER      + +   AD ALY AK++GRN V
Sbjct: 573 LKALEIPHLSSPIMPYVTVSIGIATLTPERYDSLDQAYLYQCADDALYSAKQAGRNGV 630


>gi|58581502|ref|YP_200518.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58426096|gb|AAW75133.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 569

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      SL             LS++  D+D+FKQ ND+ GH  GD ++A + 
Sbjct: 402 DALTGLYNRRYLEESLSHELARCARRGLPLSVLMLDVDHFKQFNDSQGHAGGDLLLAAVG 461

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L+    T     R GGEEF      +  +EA  +A  +R  I    ++  +     +T
Sbjct: 462 ELLLTRLRTEDVACRYGGEEFTVLLPEADGEEALRVAEQIRGYIAALAVSDEARALPKVT 521

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+A      E  +++I +AD ALY AK  GRNRV
Sbjct: 522 ASIGVASFPADGEQGASLIQKADAALYRAKHRGRNRV 558


>gi|78047541|ref|YP_363716.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78035971|emb|CAJ23662.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 983

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 79/156 (50%), Gaps = 10/156 (6%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN +  +++L             L++V  D+D+FK +ND  GH  GD V+A + 
Sbjct: 818 DELTGLLNRAGILAALREMLLHAEHTGRPLAVVLIDLDHFKLVNDQHGHLAGDAVLAGVG 877

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            ++  +      +GR GGEE  A   G +      L      I  +  I+   G  +H+T
Sbjct: 878 RRMDTLMRGDDRIGRYGGEELLALLPGLNLDATHRLDALHHGICGDYPID---GGWLHVT 934

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+A     E +  ++ RAD ALY AK+SGRNR+
Sbjct: 935 CSVGVAWFQRGETLEQLLARADAALYRAKRSGRNRI 970


>gi|308051420|ref|YP_003914986.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
 gi|307633610|gb|ADN77912.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
          Length = 352

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 9/162 (5%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+GL N   F       +S        LS++  D+DYFK+ ND+FGH  GD+ +
Sbjct: 188 LSNQDPLTGLGNRRCFEQRLAQSVSEAKRSKNALSLILLDVDYFKRYNDHFGHQAGDECL 247

Query: 156 AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSG 213
             ++  L +        + R+GGEEF      + ++ A  LA +++ ++++    +  SG
Sbjct: 248 RTVAQILRLSSRRQSDTLARIGGEEFVLLLPNTDKRGAQRLAEEIQSRLLQADLDHPQSG 307

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S  +T+S GIA+         ++++AD+A+Y +K +GRN +
Sbjct: 308 ISKRVTLSQGIAQWHPGLSGDALMHQADKAMYESKLAGRNTI 349


>gi|237731361|ref|ZP_04561842.1| diguanylate cyclase [Citrobacter sp. 30_2]
 gi|226906900|gb|EEH92818.1| diguanylate cyclase [Citrobacter sp. 30_2]
          Length = 594

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 74/163 (45%), Gaps = 7/163 (4%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      +L +         E +S +  DID+FK IND FGH  GD VI  ++
Sbjct: 430 DPLTGLRNRHHLEDTLRTQMSQAVRNKEPISCLMIDIDHFKSINDRFGHEAGDSVIKSIA 489

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +  V        R GGEEF      + EQ A   A ++   +    +        H+ 
Sbjct: 490 ATIQRVVHDSGMAFRYGGEEFLVLLANTDEQAANRFATEIYNGVRELSLRFGVSDIGHVD 549

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +S G+A          ++  AD ALY AK+ GR+R+V F  +E
Sbjct: 550 VSIGVASYPQHAQSDNLLRAADVALYRAKELGRSRIVSFGMLE 592


>gi|163748644|ref|ZP_02155897.1| sensory box protein [Shewanella benthica KT99]
 gi|161331754|gb|EDQ02558.1| sensory box protein [Shewanella benthica KT99]
          Length = 859

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 112/223 (50%), Gaps = 22/223 (9%)

Query: 61  LEYILVENLSLVIISITISLLLGY---ISGSIL-------KELFISYNRISQLSRIDCLS 110
           L  + ++  S  I+  +IS LL +   ++G+++       +EL     ++ Q +  D ++
Sbjct: 380 LSKLTLQGESTRIMERSISNLLNHKQRVTGTVILLRDITQEELL--KRKLHQRANFDPIT 437

Query: 111 GLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
            LLN  AF   L +++   + ++I +FD++ FK IND+ GH  GD+++A ++  +     
Sbjct: 438 SLLNRRAFEERLAAFSLGAQSVAICYFDLEQFKLINDSCGHSAGDRMLAIVARAMQSCLT 497

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH--ITISAGIA 225
               + RLGG+EF  A    S  E A LA   ++++ +  + +    + H  + +SAGIA
Sbjct: 498 QDEMLARLGGDEFGLAIRDHSALEVAQLA---KRMVASVSMQVLRDNACHCKVGVSAGIA 554

Query: 226 -ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN-TC 266
             R        ++  AD A   AK  G N+V  + D + + TC
Sbjct: 555 IARAPYISAKELLKDADIACLAAKSKGSNQVHFYDDKDKDLTC 597


>gi|54292994|ref|YP_125409.1| hypothetical protein lpl0030 [Legionella pneumophila str. Lens]
 gi|53752826|emb|CAH14260.1| hypothetical protein lpl0030 [Legionella pneumophila str. Lens]
          Length = 976

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 4/137 (2%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           N+KL+++F D+D FKQIND+ GH +GD ++  LS++ + +      + RLGG+EF     
Sbjct: 580 NQKLAVLFLDLDEFKQINDSLGHAIGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILE 639

Query: 186 G-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQA 243
               +++A I+A   R+I   SQ  +     + ++ S GIA    H +   T++  AD A
Sbjct: 640 NIMQDKDAEIIAKKCREIC--SQPFVIESQELLVSTSIGIAIYPEHGKDAKTLMRNADTA 697

Query: 244 LYVAKKSGRNRVVCFSD 260
           +Y +K  G+N    F +
Sbjct: 698 MYQSKIRGKNNWTVFQN 714


>gi|86146774|ref|ZP_01065094.1| hypothetical protein MED222_15549 [Vibrio sp. MED222]
 gi|85835424|gb|EAQ53562.1| hypothetical protein MED222_15549 [Vibrio sp. MED222]
          Length = 652

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 8/132 (6%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           ++   D+D FK++ND +GH +GD+V+  ++ ++     T   + R GGEEF     G+ +
Sbjct: 522 TLAILDLDQFKRVNDTYGHDIGDQVLVEVAKRIERALSTNDVLARWGGEEFVLLLAGTQD 581

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-----ADQAL 244
            +  +    +R+ I +  I   SGP + +T S G       + +++  Y+     AD AL
Sbjct: 582 PDEQL--EMIRQTIADQTIETYSGP-LALTTSIGATIHLTYQELNSSTYKQHLKSADDAL 638

Query: 245 YVAKKSGRNRVV 256
           Y AK+SGRN+VV
Sbjct: 639 YQAKQSGRNQVV 650


>gi|254705887|ref|ZP_05167715.1| GGDEF domain-containing protein [Brucella pinnipedialis M163/99/10]
 gi|254711115|ref|ZP_05172926.1| GGDEF domain-containing protein [Brucella pinnipedialis B2/94]
 gi|254712426|ref|ZP_05174237.1| GGDEF domain-containing protein [Brucella ceti M644/93/1]
 gi|254715498|ref|ZP_05177309.1| GGDEF domain-containing protein [Brucella ceti M13/05/1]
 gi|256029496|ref|ZP_05443110.1| GGDEF domain-containing protein [Brucella pinnipedialis M292/94/1]
 gi|256059190|ref|ZP_05449396.1| GGDEF domain-containing protein [Brucella neotomae 5K33]
 gi|260167413|ref|ZP_05754224.1| GGDEF domain protein [Brucella sp. F5/99]
          Length = 221

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 112/230 (48%), Gaps = 23/230 (10%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
            IAT+I I+       G+    G++   V  L  +++   I++ LG    S L+EL  SY
Sbjct: 1   MIATIISIS----LSTGIRFALGVKSDTVTILVRLLLPFLIAMPLGVFWFSRLEELERSY 56

Query: 98  -------NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFG 147
                  N +++++ +D L+GLLN  +FI    + N+     +F   D+DY KQIND +G
Sbjct: 57  RTAVKRANELARVASVDPLTGLLNRRSFIQQFNAANKAGVRGWFLIVDVDYLKQINDQYG 116

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILAN-DLRK--II 203
           HP GD  I  ++  L     +   + R+GG+EF A    G+     ++L++  LR   ++
Sbjct: 117 HPAGDDAIIAVAQALEDCLSSDSLIARIGGDEFCAFVPKGAINDVDSVLSDISLRADGLL 176

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
              + N+ S     +T+S G       +    ++  AD+ LY  KKS R 
Sbjct: 177 REKRPNVGS----SLTVSVGRISCKTGQIFEEVLSIADEQLY-RKKSQRQ 221


>gi|242242116|ref|ZP_04796561.1| ABC superfamily ATP binding cassette transporter, binding protein
           [Staphylococcus epidermidis W23144]
 gi|242234429|gb|EES36741.1| ABC superfamily ATP binding cassette transporter, binding protein
           [Staphylococcus epidermidis W23144]
          Length = 365

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 101/213 (47%), Gaps = 18/213 (8%)

Query: 55  LTPFYGLEYILVENLSLVIIS--ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112
           L+P Y L    VE L L+ IS  ITI+  + ++    +   F   NR     + D L+GL
Sbjct: 153 LSPIYEL----VEILVLIPISFIITIASAITFVD---IWHFFSLVNRYENEDKYDYLTGL 205

Query: 113 LNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N   F   L   + K       L+++  DID FK +ND++ H  GD V+  +S  L   
Sbjct: 206 GNVKEFDRHLNEVSSKAEEKKQSLALLLIDIDGFKDVNDHYSHQSGDAVLKQMSQLLKNY 265

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                 + R GGEEF+      +  ++  LA ++R  +E S  ++ +   I +++S G+ 
Sbjct: 266 VPNQFKIFRNGGEEFSVVIRDYTLDQSVKLAENIRSGVEKSSFHLPNKEVIKLSVSIGVG 325

Query: 226 ERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
                +  S   +   AD  ++VAK  GRN+V+
Sbjct: 326 YLTQDDRKSQRKVFKDADDMVHVAKSEGRNKVM 358


>gi|192292005|ref|YP_001992610.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           TIE-1]
 gi|192285754|gb|ACF02135.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           TIE-1]
          Length = 656

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 81/174 (46%), Gaps = 23/174 (13%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGH 148
           E+  S   + Q++R D L+GL N S F  +        + ++ V FD+D FK +ND  GH
Sbjct: 213 EVLNSNRALEQIARADPLTGLANRSHFRDAAADACRSGQGVAFVLFDVDNFKIVNDTRGH 272

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF---------AAAALGSSEQEAAILANDL 199
             GD+VIA ++D L    G      RLGG+EF         AA AL  + + +  L   L
Sbjct: 273 DAGDRVIAAVADLLRSSCGPHDLPVRLGGDEFIVVLKGDDVAARALSLARRLSGALTRPL 332

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGR 252
           + +          G  + IT S GIA        +  +  RAD ALY AK  GR
Sbjct: 333 QVL----------GQPLAITCSIGIAAHPGGPIDVEDVFSRADAALYRAKDDGR 376


>gi|153215165|ref|ZP_01949863.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|124114889|gb|EAY33709.1| GGDEF family protein [Vibrio cholerae 1587]
          Length = 359

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 78/164 (47%), Gaps = 19/164 (11%)

Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+G LN       L          NE   I   DID+FK +ND +GH  GDKVI
Sbjct: 178 LSTRDALTGTLNRHQLDGFLKKCLRHRQLANESAVIAVIDIDHFKSVNDLYGHDTGDKVI 237

Query: 156 AFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
                Q+V +  T       + RLGG+EF      +S  +A ++ + +   I+ +     
Sbjct: 238 T----QVVEIMNTHCRELDLLFRLGGDEFLLLFENTSLTDATLVMSHIGCRIQQTHYPYH 293

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +     +T+S G+AE    +       RADQALY +KK G+NRV
Sbjct: 294 AK----VTVSVGLAEALRTDDPEHWFKRADQALYHSKKMGKNRV 333


>gi|307316675|ref|ZP_07596118.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83]
 gi|306897873|gb|EFN28616.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83]
          Length = 564

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 75/163 (46%), Gaps = 15/163 (9%)

Query: 107 DCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GL N   F   L          +L+++  D+D FK IND  GH  GD V+   +D+
Sbjct: 138 DVLTGLPNRRQFSDQLRGALPVPNGARLALMQIDLDDFKPINDTLGHGAGDAVLKMAADR 197

Query: 162 LVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
           +  V     F  RL G+EFA     A     +E+ A  L N  ++      IN+  G S+
Sbjct: 198 IRSVLRDREFAYRLAGDEFAVIQWRADQPSEAERLADALINAFKEPFTVEGINVFVGASV 257

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I ++ G         +  ++  AD ALY AKK GR R   F+
Sbjct: 258 GIAVAPGDGNE-----VEQLMKAADIALYAAKKDGRGRSSTFT 295


>gi|293374569|ref|ZP_06620887.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sanguinis
           PC909]
 gi|292646802|gb|EFF64794.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sanguinis
           PC909]
          Length = 685

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 9/176 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQIN 143
           G + ++ ++   +   L   D  +GLLN   + + +       +  + + FDIDYFK IN
Sbjct: 515 GVLYRQRYMD-KKTEYLKYTDYATGLLNRVGYENEMNKVLKRRQHFAFIIFDIDYFKSIN 573

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH +GDKVI  ++  +         + RLGG+EF    +     +   +   +++ +
Sbjct: 574 DTYGHLIGDKVIEHVAYTIKSCTRKGDIICRLGGDEFVLCLMMDDIAKVCTVLEAIQEEM 633

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +   ++    SI +TI  G  + C  E    + + ADQALY +KK+GRN+   FS
Sbjct: 634 FDYSEDLKVTASIGVTIYEG--QDCGME---MLYHEADQALYKSKKNGRNQFNIFS 684


>gi|262375814|ref|ZP_06069046.1| predicted protein [Acinetobacter lwoffii SH145]
 gi|262309417|gb|EEY90548.1| predicted protein [Acinetobacter lwoffii SH145]
          Length = 384

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 5/153 (3%)

Query: 107 DCLSGLLNHSAFISSLGSYNE----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+GLLN   F + +   +     + +++  D+D+FK +ND +GH VGD V+  +S   
Sbjct: 225 DPLTGLLNRRGFEAYIQKIDPNPALQHAVLMADLDHFKAVNDRYGHQVGDLVLQHISQIF 284

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                +   V R+GGEEF        +  A  +A  +R  +E + ++      I++TIS 
Sbjct: 285 KANIRSKDQVSRIGGEEFLLVLHDIQKDAAFKIAERIRLQLEETPLH-HEQQLIYLTISI 343

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G++   H   I      AD A+Y AK+ GRN+V
Sbjct: 344 GVSFFNHPNQIKEATLAADHAMYQAKQMGRNQV 376


>gi|298530455|ref|ZP_07017857.1| response regulator receiver modulated diguanylate cyclase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509829|gb|EFI33733.1| response regulator receiver modulated diguanylate cyclase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 425

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 95/184 (51%), Gaps = 19/184 (10%)

Query: 83  GYISGSILKELFISYNRISQ-----LSRIDCLSGLLNHSAFISSLG-------SYNEKLS 130
           G  +G +L  L I+    S+     ++  D L+GL N + F+  L         Y   + 
Sbjct: 233 GGHAGVVLMSLDITQQEKSRQKCEYMAMYDSLTGLGNRNLFMDRLEHVLSQARRYGNFVG 292

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSE 189
           +++ D+D FK+IND  GH  GD+V+   + ++           RLGG+EFA       + 
Sbjct: 293 MLYLDLDGFKEINDRLGHAAGDEVLVETARRIKSCLRESDIPARLGGDEFAVILPQMKNP 352

Query: 190 QEAAILANDLRKIIE--NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYV 246
           +EA  +A    KI+E  N Q + S+G ++++ ISAG+A    H + +  ++  AD+A+Y 
Sbjct: 353 REAEEVAG---KILEKWNPQFDTSAGKAVNMNISAGLAAFPEHGDTLDRLVNTADKAMYQ 409

Query: 247 AKKS 250
           AKK+
Sbjct: 410 AKKT 413


>gi|213969082|ref|ZP_03397221.1| response regulator/GGDEF domain protein [Pseudomonas syringae pv.
           tomato T1]
 gi|301384024|ref|ZP_07232442.1| response regulator/GGDEF domain protein [Pseudomonas syringae pv.
           tomato Max13]
 gi|302058730|ref|ZP_07250271.1| response regulator/GGDEF domain protein [Pseudomonas syringae pv.
           tomato K40]
 gi|302131692|ref|ZP_07257682.1| response regulator/GGDEF domain protein [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213926080|gb|EEB59636.1| response regulator/GGDEF domain protein [Pseudomonas syringae pv.
           tomato T1]
          Length = 334

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L   D L+GL N   F   L            +LS++  D+DYFK  NDNFGH  GD
Sbjct: 165 LQRLMNSDGLTGLSNRRHFDEYLELEWRRATRDQAQLSLLMIDVDYFKAYNDNFGHLEGD 224

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  ++  +      P     R GGEEFA     +S   A +LA  LR+ +    I +I
Sbjct: 225 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVAGMNIPHI 284

Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
           +  P   +T+S G+A    +  +    +I  AD+ LY+AK +GRN+V  
Sbjct: 285 APVPGSSLTVSIGVATVTPQVGQHSRQLILDADKGLYLAKNNGRNQVAA 333


>gi|167576691|ref|ZP_02369565.1| GGDEF domain protein [Burkholderia thailandensis TXDOH]
          Length = 462

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 88/173 (50%), Gaps = 11/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           + L+ ++  + + +  D L+ + N S F          +  +N  +++V  D+D+FKQ N
Sbjct: 275 RRLYDAHASLMRTASHDALTMVYNRSYFNEQFERAFDYVRRHNLPIALVMVDVDHFKQYN 334

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD  +A ++  L  V      FV R GGEEFA    G+ E+ AA +A   R+ 
Sbjct: 335 DTFGHLQGDTCLAAVAAALSGVASRAADFVARYGGEEFAVVLPGTDERGAAAIAEQARQS 394

Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
           +E  +I   + P  ++T+SAG A       E    ++  AD ALY AK  GRN
Sbjct: 395 VERLRIAADTSPG-YVTVSAGYAATSGNPFETPGALVAAADAALYRAKMLGRN 446


>gi|28868706|ref|NP_791325.1| response regulator/GGDEF domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|256032859|pdb|3I5A|A Chain A, Crystal Structure Of Full-Length Wpsr From Pseudomonas
           Syringae
 gi|28851945|gb|AAO55020.1| response regulator/GGDEF domain protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|331016327|gb|EGH96383.1| response regulator/GGDEF domain protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 334

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L   D L+GL N   F   L            +LS++  D+DYFK  NDNFGH  GD
Sbjct: 165 LQRLMNSDGLTGLSNRRHFDEYLELEWRRATRDQAQLSLLMIDVDYFKAYNDNFGHLEGD 224

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  ++  +      P     R GGEEFA     +S   A +LA  LR+ +    I +I
Sbjct: 225 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVAGMNIPHI 284

Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
           +  P   +T+S G+A    +  +    +I  AD+ LY+AK +GRN+V  
Sbjct: 285 APVPGSSLTVSIGVATVTPQVGQHSRQLILDADKGLYLAKNNGRNQVAA 333


>gi|39936085|ref|NP_948361.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009]
 gi|39649939|emb|CAE28463.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris
           CGA009]
          Length = 388

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 99/203 (48%), Gaps = 10/203 (4%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS 130
           LV+  +T+     ++S +  + L   + R+++ +  D L+ L N + F+ +L       +
Sbjct: 176 LVLFWLTLREASKHLSAAFTERLEAKH-RLARQATHDFLTDLPNRAGFLQALSDMAGNFT 234

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSE 189
           +V  D+D FK IND  GH  GD ++  ++++L    G      R GG+EF     + S+E
Sbjct: 235 VVAIDLDGFKPINDRHGHHTGDDLLRQVAERLTTCVGADGVAARFGGDEFMLLKPVTSAE 294

Query: 190 Q---EAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQA 243
           Q   EA  LA   + + + S   + +   + I  SAGIA           + ++ R D+A
Sbjct: 295 QGRDEALALAR--KAVFDLSMPYLLADLPVCIGASAGIAISHAALAGGNTAQLLERVDRA 352

Query: 244 LYVAKKSGRNRVVCFSDIENNTC 266
           LYVAK++G        DIE + C
Sbjct: 353 LYVAKRAGGGCAWADGDIEPSCC 375


>gi|294339848|emb|CAZ88211.1| hypothetical protein; putative Diguanylate kinase with GGDEF domain
           [Thiomonas sp. 3As]
          Length = 325

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 89/196 (45%), Gaps = 16/196 (8%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           I L L  + G    E+  +  R +Q    D L+GL   +A    L              S
Sbjct: 138 IELGLDTLQGFADLEVVFAAQRAAQ----DPLTGLPGRAALQQRLQGEQSLVLRQGRMCS 193

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +V  DID+FK +ND  GH  GD+V+A  +  L         V R GGEEF     G++  
Sbjct: 194 VVMLDIDHFKSVNDQHGHQAGDRVLAAFARLLRGALRPYDGVYRYGGEEFVLVLPGATAA 253

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +A  + + +R+ I    +  +    +HI  SAG+A   ++  I+  +  AD ALY AK  
Sbjct: 254 QAVQIIDRMRQTIAQRPLVQTQTGGLHIRFSAGVAA-LNERAIAQTLRCADAALYHAKAE 312

Query: 251 GRNRVVCFSDIENNTC 266
           GR++V     +E   C
Sbjct: 313 GRDQV----RLERGHC 324


>gi|295690169|ref|YP_003593862.1| response regulator receiver modulated diguanylate cyclase
           [Caulobacter segnis ATCC 21756]
 gi|295432072|gb|ADG11244.1| response regulator receiver modulated diguanylate cyclase
           [Caulobacter segnis ATCC 21756]
          Length = 454

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 9/164 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL N    +  L +         +++S +  DID+FK+IND FGH +GD+V
Sbjct: 287 ELAVTDQLTGLHNRRYMVGQLETLVRRAAMGGDEVSALLIDIDHFKKINDTFGHDIGDEV 346

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   + +L           R GGEEF      +   +A  +A  +RK +  S   +++G 
Sbjct: 347 LREFALRLASNVRAIDLPCRYGGEEFTVIMPETRMADALRIAERIRKHVSASPFKVANGD 406

Query: 215 S-IHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256
             + +T+S G++     E     ++ RAD+ +Y AK SGRN VV
Sbjct: 407 EMLTVTVSVGVSATGGPEDTPEALLKRADEGVYEAKASGRNTVV 450


>gi|213621209|ref|ZP_03373992.1| hypothetical protein SentesTyp_28347 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 205

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 7/177 (3%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFG 147
           +L      ++ LS +D L+GL N     + L +     S    ++  DID+FK  ND++G
Sbjct: 28  KLLAERETLNGLSMLDPLTGLYNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYG 87

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD+ +  +S  +     +   V R GGEEF      +  Q+A   A  +R+ + + +
Sbjct: 88  HMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLK 147

Query: 208 IN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           I    +   + ++T+S GIA    +  I   I +AD+ALY AK  GRN ++   D+ 
Sbjct: 148 IPHMFNESVATNVTVSIGIAPLTDRN-IGDAIEKADKALYEAKHLGRNHILVSDDMR 203


>gi|167640924|ref|ZP_02399182.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193]
 gi|177652778|ref|ZP_02935151.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174]
 gi|254738759|ref|ZP_05196462.1| sensory box/GGDEF family protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|167511144|gb|EDR86532.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193]
 gi|172081812|gb|EDT66881.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174]
          Length = 567

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 87/174 (50%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++        +  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF        + E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHKQDEMRQLATSVLSCFQAP- 251

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 252 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304


>gi|71734247|ref|YP_275408.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554800|gb|AAZ34011.1| GGDEF domain protein [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 523

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 86/178 (48%), Gaps = 18/178 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYN-EKLSIVFFDIDYFKQIND 144
           EL I+ N +  ++  D L+ L N   F ++L       S N   ++I+  DID+FKQ ND
Sbjct: 328 ELNIARNELEIIAHTDSLTHLANRRCFDAALQQEWGRASRNTATIAIILLDIDWFKQYND 387

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDL 199
            +GH  GD  +     Q+  + G  +        R GGEEF      +    A  +A  +
Sbjct: 388 TYGHLQGDDCL----KQVAGLIGNSLDRAGDIAARYGGEEFVILLPETDLAGALKIAEKI 443

Query: 200 RKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           R  +E ++I  S+ P   +TIS+G+       K+  +  +   D+ LY+AK  GRNRV
Sbjct: 444 RSSVETNRIEHSASPLGKLTISSGVVSINAAEKDGHTAALAEGDRLLYLAKTRGRNRV 501


>gi|332533402|ref|ZP_08409267.1| response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037111|gb|EGI73568.1| response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Pseudoalteromonas haloplanktis ANT/505]
          Length = 266

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 75/163 (46%), Gaps = 7/163 (4%)

Query: 101 SQLSRIDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDK 153
            Q +  D L+G+ N     S F+    +  E+    SI+  D+D FK +ND  GH  GD 
Sbjct: 102 KQDAYTDPLTGIANRRFITSHFLKLAQTRPEQYLPFSILLIDLDNFKSLNDTHGHDFGDT 161

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+   +  L   F       R GGEEF       +   A ++AN  R+ +    I     
Sbjct: 162 VLIEFTKLLESQFLATALKARYGGEEFVVILPQLTASTATVIANKFREAVAGHVIFTDDK 221

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I IT S GI++          + +AD+ALY AK +GRNRVV
Sbjct: 222 QRISITCSIGISQVNKVTDYDDSLKQADEALYSAKAAGRNRVV 264


>gi|330821023|ref|YP_004349885.1| Diguanylate cyclase with PAS/PAC sensor [Burkholderia gladioli
           BSR3]
 gi|327373018|gb|AEA64373.1| Diguanylate cyclase with PAS/PAC sensor [Burkholderia gladioli
           BSR3]
          Length = 600

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 98/191 (51%), Gaps = 12/191 (6%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS--------LGSYNEKLS 130
           +L  G+I+ +  ++   +   + +L+ ID L+ L N   F++           + + + +
Sbjct: 413 TLWHGFITDTTERKRIEA--ELHELATIDHLTELANRRDFLAQSEAVFMRLRHTGHGEAA 470

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D+FK +ND +GH +GD+ +   +  L     +   VGR+GGEEFAA   G S  
Sbjct: 471 VLMLDLDHFKSLNDRWGHALGDRALRHFAQLLRQEARSTDIVGRIGGEEFAAVLPGLSID 530

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKK 249
            A      L++ +  + + +     + +T+S GI      +  +  ++ R D+ALYVAK 
Sbjct: 531 AAIDFGLRLQQRMTEAPLAVGER-LVALTVSIGIDRMSAADLGVDQVLTRCDKALYVAKA 589

Query: 250 SGRNRVVCFSD 260
            GRNR+  ++D
Sbjct: 590 RGRNRIELYTD 600


>gi|332716500|ref|YP_004443966.1| diguanylate cyclase [Agrobacterium sp. H13-3]
 gi|325063185|gb|ADY66875.1| diguanylate cyclase [Agrobacterium sp. H13-3]
          Length = 302

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 96/211 (45%), Gaps = 17/211 (8%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F+  E +  +   L + S    L  GY +    ++L +      + S+ D L+G  N   
Sbjct: 99  FWMTETVQQDGWMLCVASDVTELRQGYRTLRQDRDLAV------RASQTDELTGTANRRF 152

Query: 118 FISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHPVGDKVIA-FLSDQLVVVFGT 168
             + L    E++         +   DID+FK IND FGH  GD V+  F+     VV   
Sbjct: 153 VFAKLALQVERVGKGLEAPFCLCTLDIDFFKHINDRFGHKCGDAVLRDFVGIAHSVVRRV 212

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
             F GR+GGEEF      SS  E+  +   L + +  S+  ++  P    + SAG+    
Sbjct: 213 DCF-GRIGGEEFMLILPRSSVVESREIVERLLQKVRLSR-PLAEFPDFSYSCSAGMTTYR 270

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             E    +  RADQALY AK+ GR+R++  +
Sbjct: 271 MAESADDVFMRADQALYAAKEKGRDRLLAVT 301


>gi|269963669|ref|ZP_06177991.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831581|gb|EEZ85718.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 537

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 91/162 (56%), Gaps = 11/162 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           + +++ +D L+ LLN   F  +L  Y   + K S+V FDID FK IND +GH  GD+ + 
Sbjct: 377 LKRMAELDPLTQLLNRRVFNDNLLHYINSDVKFSLVGFDIDRFKLINDKYGHLAGDEALL 436

Query: 157 FLSDQLV---VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            ++ +LV   ++ G   +  R GG+EF   +  + ++E A+  + LR I+ +S     S 
Sbjct: 437 HVT-KLVNANLLDGDRFY--RAGGDEFCILSRVTDKEELAVYLDKLRGIVASSPFEYEST 493

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           P I  ++S G A    ++P  ++ ++ D  LY +K++GRN V
Sbjct: 494 PII-CSLSIGAAVHKDEDP-ESLFHKMDVQLYQSKENGRNSV 533


>gi|163738700|ref|ZP_02146114.1| diguanylate cyclase, putative [Phaeobacter gallaeciensis BS107]
 gi|161388028|gb|EDQ12383.1| diguanylate cyclase, putative [Phaeobacter gallaeciensis BS107]
          Length = 598

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 76/165 (46%), Gaps = 8/165 (4%)

Query: 107 DCLSGLLNHSAFISSL-----GSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      +L      S N    LSI+  D+D+FK+ NDN GH  GD V+  + 
Sbjct: 410 DPLTGLFNRRHMTETLRKSIGNSQNSGTPLSIIAVDVDHFKKFNDNHGHDAGDMVLRAVG 469

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L           R GGEEF     G+S+++    A  LR+ +E   +         I+
Sbjct: 470 SVLEQACDGDEVACRPGGEEFTLILPGASQEDVMTKAELLRQAVEAIVVRYGEKALPGIS 529

Query: 220 ISAGIAERCHKEPISTIIYRA-DQALYVAKKSGRNRVVCFSDIEN 263
           IS G+A       +   + RA D+ALY AK  GRN+V   S  E 
Sbjct: 530 ISLGVAHYPRHGTMPQDLLRASDEALYEAKAKGRNQVCVASSAEQ 574


>gi|163741588|ref|ZP_02148979.1| diguanylate cyclase, putative [Phaeobacter gallaeciensis 2.10]
 gi|161385322|gb|EDQ09700.1| diguanylate cyclase, putative [Phaeobacter gallaeciensis 2.10]
          Length = 598

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 76/165 (46%), Gaps = 8/165 (4%)

Query: 107 DCLSGLLNHSAFISSL-----GSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      +L      S N    LSI+  D+D+FK+ NDN GH  GD V+  + 
Sbjct: 410 DPLTGLFNRRHMTETLRKSIGNSQNSGTPLSIIAVDVDHFKKFNDNHGHDAGDMVLRAVG 469

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L           R GGEEF     G+S+++    A  LR+ +E   +         I+
Sbjct: 470 SVLEQACDGDEVACRPGGEEFTLILPGASQEDVMTKAELLRQAVEAIVVRYGEKALPGIS 529

Query: 220 ISAGIAERCHKEPISTIIYRA-DQALYVAKKSGRNRVVCFSDIEN 263
           IS G+A       +   + RA D+ALY AK  GRN+V   S  E 
Sbjct: 530 ISLGVAHYPRHGTMPQDLLRASDEALYEAKAKGRNQVCVASSAEQ 574


>gi|254286706|ref|ZP_04961661.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|150423290|gb|EDN15236.1| GGDEF family protein [Vibrio cholerae AM-19226]
          Length = 359

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 78/164 (47%), Gaps = 19/164 (11%)

Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+G LN       L          NE   I   DID+FK +ND +GH  GDKVI
Sbjct: 178 LSTRDALTGTLNRHQLDGFLKKCLRHRQLANESAVIAVIDIDHFKSVNDLYGHDTGDKVI 237

Query: 156 AFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
                Q+V +  T       + RLGG+EF      +S  +A ++ + +   I+ +     
Sbjct: 238 T----QVVEIMNTHCRELDLLFRLGGDEFLLLFENTSLTDATLVMSHIGCRIQQTHYPYH 293

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +     +T+S G+AE    +       RADQALY +KK G+NRV
Sbjct: 294 AK----VTVSVGLAEALRTDDPEHWFKRADQALYHSKKMGKNRV 333


>gi|70733064|ref|YP_262837.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas fluorescens Pf-5]
 gi|68347363|gb|AAY94969.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas fluorescens Pf-5]
          Length = 707

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 85/158 (53%), Gaps = 14/158 (8%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN   F  ++           + L +++ D+D FK++ND+ GH  GD+V+ ++S
Sbjct: 279 DPLTGLLNRRGFYQTVENILLRSDRSGKSLVLLYLDLDGFKRVNDSLGHDAGDRVLRWVS 338

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHI 218
           +QL     +   +GR+GG+EF A    S  ++AA +A    K+IE   IN    G  + +
Sbjct: 339 EQLKDCLHSFDILGRMGGDEFTALLELSFPEQAAKIAE---KLIERLSINQQIDGLEVVL 395

Query: 219 TISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254
             S GIA    C    +  ++  AD A+Y AK++GR +
Sbjct: 396 GASIGIAIYPDCGSN-LDGLLRAADIAMYEAKRAGRQQ 432


>gi|47569773|ref|ZP_00240445.1| sensory box protein [Bacillus cereus G9241]
 gi|47553569|gb|EAL11948.1| sensory box protein [Bacillus cereus G9241]
          Length = 937

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 11/176 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 498 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQTSANDVAVMFLDLDRFKKINDR 557

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIE 204
            GH VGD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  I+ 
Sbjct: 558 LGHDVGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL- 616

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           N    I  G  + IT S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 617 NKPFFI-QGEELSITPSIGIAMYPDYGTDVTELMKNADMAMYRAKANGKNRFVFFS 671


>gi|307132658|ref|YP_003884674.1| GGDEF domain-containing protein [Dickeya dadantii 3937]
 gi|306530187|gb|ADN00118.1| GGDEF domain protein [Dickeya dadantii 3937]
          Length = 380

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 105/212 (49%), Gaps = 14/212 (6%)

Query: 48  IFLFYIGLTP-FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
           I +  +G +P F  +     E ++L  IS+ I+++ G +   + K+  I    +   +R 
Sbjct: 150 IRVTTLGSSPGFSNIATSSAEIITLACISLMIAVM-GSLLSLVAKKYLIE---LPTTARY 205

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G L   AF  S           ++ +  +  DID+FKQ+ND  GH  GD+ +  ++
Sbjct: 206 DDLTGFLRRDAFYQSANRALKAARHESKPMCAMLIDIDHFKQVNDTLGHAAGDEALKAVA 265

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + +   F     + RLGG+EFA      S++ A  +A  +R+ I     + SS  S  IT
Sbjct: 266 NVIRHSFRRHDILCRLGGDEFAVVLPNISQENAVRVAERVREGIHELG-HTSSSMSPGIT 324

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKS 250
           +S G +A     E +  II RAD  LY+AK++
Sbjct: 325 VSIGLVAVESPDEGLDEIIRRADVNLYLAKRT 356


>gi|228913316|ref|ZP_04076950.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228925816|ref|ZP_04088900.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228932055|ref|ZP_04094947.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228944380|ref|ZP_04106753.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|229120277|ref|ZP_04249528.1| Sensory box/GGDEF [Bacillus cereus 95/8201]
 gi|228663318|gb|EEL18907.1| Sensory box/GGDEF [Bacillus cereus 95/8201]
 gi|228815282|gb|EEM61530.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228827638|gb|EEM73380.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228833831|gb|EEM79384.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228846367|gb|EEM91385.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 569

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 87/174 (50%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++        +  +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF        + E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHKQDEMRQLATSVLSCFQAP- 253

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306


>gi|166711385|ref|ZP_02242592.1| hypothetical protein Xoryp_07950 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 803

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 9/167 (5%)

Query: 104 SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GL+N       L        S     ++ F D+D+FK +ND FGH VGDK + 
Sbjct: 372 ARHDALTGLINRHEIEHRLQLLIELPRSPQMCHALCFVDMDHFKLVNDTFGHAVGDKFLC 431

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             +D + +      ++GRLGG+EFA     +   +A  L   +  ++     +   G  +
Sbjct: 432 HFADVITMQLRPGDWLGRLGGDEFAILLANTDLPQARALLEGMHAVLGQPWSH-QGGRPL 490

Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             + S G+ E R     +++++  AD A + AK+ GRNR+ CF++ +
Sbjct: 491 TPSCSFGVVEIRQSVSDVNSLMTAADLACHAAKEEGRNRIRCFNETD 537


>gi|331014780|gb|EGH94836.1| GGDEF domain protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 278

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 82/159 (51%), Gaps = 9/159 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           ++  +L+  D L+ + N  AF+ S  S     E   ++  DID FK IND  GH +GD++
Sbjct: 88  SKFRELAETDYLTSIPNRRAFMESFDSLIKGGESGYLIMLDIDNFKLINDRHGHEIGDRI 147

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  L    G+    GR+GGEEF     G  E  A    + + +++E  + N    P
Sbjct: 148 LCSMAACLRATSGSHC-AGRIGGEEFGVLITGGDELTA---CDYILRLLETVRANFD--P 201

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             + + SAG+        +S  +  AD+++Y+AK++G++
Sbjct: 202 PYNYSCSAGMVRFSAASTMSEALSMADKSMYIAKRNGKD 240


>gi|330878551|gb|EGH12700.1| diguanylate cyclase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 501

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 10/174 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L +S  ++  L+  D L+GL N   F  +L     +       L+++  DIDYFK+ N
Sbjct: 322 QQLILSNRQLELLAMKDALTGLANRRCFDQTLSKEARRAQREGTTLALLMIDIDYFKRFN 381

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD  +  + + L      P   V R GGEE       +  Q A ++A  +   
Sbjct: 382 DTFGHVAGDVCLRAVGEILEESVKRPSDLVARYGGEEMGIIMPNTDGQGATVVAQLIIDR 441

Query: 203 IENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +E   I  +S P   +++S GI  A     + +   I  AD+ALY AK  GRN+
Sbjct: 442 LERKNIRHNSSPFGRVSVSIGIIAAAGSQLDNVMGFIQGADRALYNAKALGRNQ 495


>gi|313201890|ref|YP_004040548.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Methylovorus sp.
           MP688]
 gi|312441206|gb|ADQ85312.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. MP688]
          Length = 821

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 77/157 (49%), Gaps = 13/157 (8%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N +         IS    +N   S+ F DID FK++ND+ GH  GD++I  L 
Sbjct: 392 DTLTGLANRNLLKERMQQAISEARRHNWTFSVAFIDIDNFKRVNDSMGHSAGDELIRLLG 451

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN--ISSGPSIH 217
            +L         V RLGG+EF       S  E+    + + + I N+ IN  I +G  + 
Sbjct: 452 QRLQSCLRDGDTVARLGGDEFVLLLTSQSLDES---IHTVVQRIRNTIINPFIITGRQLT 508

Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           +T S G+A   H      T++  AD A+Y AK SG N
Sbjct: 509 VTCSIGLANFPHDGRNADTLLSNADSAMYQAKASGSN 545


>gi|253999917|ref|YP_003051980.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Methylovorus sp.
           SIP3-4]
 gi|253986596|gb|ACT51453.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. SIP3-4]
          Length = 821

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 77/157 (49%), Gaps = 13/157 (8%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N +         IS    +N   S+ F DID FK++ND+ GH  GD++I  L 
Sbjct: 392 DTLTGLANRNLLKERMQQAISEARRHNWTFSVAFIDIDNFKRVNDSMGHSAGDELIRLLG 451

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN--ISSGPSIH 217
            +L         V RLGG+EF       S  E+    + + + I N+ IN  I +G  + 
Sbjct: 452 QRLQSCLRDGDTVARLGGDEFVLLLTSQSLDES---IHTVVQRIRNTIINPFIITGRQLT 508

Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           +T S G+A   H      T++  AD A+Y AK SG N
Sbjct: 509 VTCSIGLANFPHDGRNADTLLSNADSAMYQAKASGSN 545


>gi|254457672|ref|ZP_05071100.1| signal transduction protein containing diguanilate
           cyclase/phosphodiesterase domain [Campylobacterales
           bacterium GD 1]
 gi|207086464|gb|EDZ63748.1| signal transduction protein containing diguanilate
           cyclase/phosphodiesterase domain [Campylobacterales
           bacterium GD 1]
          Length = 297

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 2/127 (1%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +IV  DID+FKQIND +GH VGD+V+  +S   V        V R GGEEF       ++
Sbjct: 171 TIVMADIDHFKQINDKYGHQVGDEVLVEISKLFVEHIRAYDIVARYGGEEFVFFIYSDAK 230

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           +   I    + K++++    I +   I +  S G+A+   K  I  ++  AD+ALY AKK
Sbjct: 231 ETMTIFKR-IEKMLQDQIFEIYNHK-IELKCSFGMAQDRDKLSIYELVSLADKALYEAKK 288

Query: 250 SGRNRVV 256
            GRN++V
Sbjct: 289 LGRNQIV 295


>gi|153835904|ref|ZP_01988571.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ3810]
 gi|149750658|gb|EDM61403.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ3810]
          Length = 527

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 91/192 (47%), Gaps = 17/192 (8%)

Query: 76  ITISLLLGYISGSILKELFISY-NRISQLSR---IDCLSGLLNHSAFISSLGS---YNEK 128
           + + L+L  I    LKE    + N ++QL +    D L+ L N       L     ++  
Sbjct: 337 LQLKLILSEIENKELKETTKQHKNTVAQLQQDVFTDPLTSLHNRRWLEVKLKDMLLHDTP 396

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAA 184
            +++  DID+FK IND   H VGDK I  +S +L   F    F G    R GGEEF    
Sbjct: 397 FALMVIDIDHFKSINDELSHLVGDKAIKSVSQELAAYFK---FKGASCVRFGGEEFLVIL 453

Query: 185 LGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
             S  + A + A + R +I + +  +I       +T+S GI      E      YRAD+A
Sbjct: 454 ENSQLERAEMHAENYRERIFKYAWRDILGERG--LTVSIGITLHREGENTQRTFYRADKA 511

Query: 244 LYVAKKSGRNRV 255
           LY AK +GRN+V
Sbjct: 512 LYRAKANGRNQV 523


>gi|71737976|ref|YP_273180.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558529|gb|AAZ37740.1| GGDEF domain protein [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 367

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 102/211 (48%), Gaps = 23/211 (10%)

Query: 68  NLSLVIISITISLLLGYI--SGSILKELFISYNRISQL-----SRIDCLSGLLNHSAFIS 120
           N  L + ++ + L+  Y     S +  LF    R+ Q+     +R D L+ L N      
Sbjct: 161 NAVLFVSTVALLLMASYFLERASRMSYLFALRGRLLQVQLMEFARTDGLTRLFNRRYQDE 220

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            + S  E+       ++I+  DID+FK  NDN+GHP GD  +  L  ++         V 
Sbjct: 221 VMTSVWERARKTPANVAIILLDIDHFKSYNDNYGHPQGDTCLKLLCQKIQQSAHENDAVA 280

Query: 174 -RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKE 231
            R GGEE      G + Q A  +A+ L+  +   ++ + + G S  +T+S G+A  C   
Sbjct: 281 FRFGGEEVLVLMNGDAGQ-AREMADVLQAAVAALKLPHPALGESAFVTVSLGVA--CATA 337

Query: 232 PIST---IIYRADQALYVAKKSGRNRVVCFS 259
           P +T   +I  AD ALY AK++GRN  VCF+
Sbjct: 338 PQTTADHLISAADNALYAAKRAGRN-CVCFA 367


>gi|49476849|ref|YP_034886.1| sensory box, GGDEF family protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52144683|ref|YP_082145.1| sensory box, GGDEF family protein [Bacillus cereus E33L]
 gi|196035756|ref|ZP_03103159.1| sensory box/GGDEF family protein [Bacillus cereus W]
 gi|218901822|ref|YP_002449656.1| sensory box/GGDEF family protein [Bacillus cereus AH820]
 gi|254722098|ref|ZP_05183887.1| sensory box/GGDEF family protein [Bacillus anthracis str. A1055]
 gi|49328405|gb|AAT59051.1| sensory box, GGDEF family protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51978152|gb|AAU19702.1| sensory box, GGDEF family protein [Bacillus cereus E33L]
 gi|195991723|gb|EDX55688.1| sensory box/GGDEF family protein [Bacillus cereus W]
 gi|218539049|gb|ACK91447.1| sensory box/GGDEF family protein [Bacillus cereus AH820]
          Length = 567

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 87/174 (50%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++        +  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF        + E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHKQDEMRQLATSVLSCFQAP- 251

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 252 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304


>gi|330465958|ref|YP_004403701.1| diguanylate cyclase/phosphodiesterase [Verrucosispora maris
           AB-18-032]
 gi|328808929|gb|AEB43101.1| diguanylate cyclase/phosphodiesterase [Verrucosispora maris
           AB-18-032]
          Length = 774

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 7/159 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+  L+ +D L+GL N  AF   L S     + ++++  D+D FKQ+ND FGH  GD ++
Sbjct: 335 RLRHLAYVDQLTGLPNRLAFTRRLRSALGGAQPVAVLLLDLDGFKQVNDRFGHSTGDTLL 394

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             LS ++         + R+GG+EFA    G +      LA  L   +  S      G  
Sbjct: 395 TGLSRRMRRAVADDGMIARIGGDEFAVLVTGRTAAPER-LAERLLASLHPSAGEEVVG-- 451

Query: 216 IHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRN 253
           +H + S GIAE   +    T + R AD A+Y AK +G++
Sbjct: 452 VHPSASIGIAEYGPQHVTYTDLLRDADIAMYAAKAAGKS 490


>gi|297171114|gb|ADI22125.1| FOG: GGDEF domain [uncultured myxobacterium HF0200_19H16]
          Length = 370

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 90/186 (48%), Gaps = 24/186 (12%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           KEL  +  ++ +L+  D L+G+ NH  F  SL S       +   + ++F D+DYFK  N
Sbjct: 168 KELQEANEKLRELALRDGLTGVYNHRFFQESLSSELARAARHQHSVGLLFIDVDYFKNFN 227

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMF---------VGRLGGEEFAAAALGSSEQEAAI 194
           D  GH  GD ++  L   L      P +           R GGEEF      ++++ + +
Sbjct: 228 DMAGHQAGDALLRQLGKMLSNAGDDPDYRYGGRCSDITARYGGEEFVIILPETNKENSIV 287

Query: 195 LANDLRKIIENSQINISS-GPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKK 249
            A  +R +IE     +    P   +T S G++    +   K+    +I  AD+ALY+AK+
Sbjct: 288 RAERVRMMIEEYPFEMREVQPEKKVTASIGVSIYPDDALTKQ---ALIKVADEALYIAKR 344

Query: 250 SGRNRV 255
           +GRN+V
Sbjct: 345 NGRNQV 350


>gi|301167943|emb|CBW27529.1| putative two-component response regulator with GGDEF sensory box
           protein [Bacteriovorax marinus SJ]
          Length = 303

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 93/171 (54%), Gaps = 12/171 (7%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           ++Y+++S  +  D  +G  N + F       +       + LS++ FD+D+FK +NDN+G
Sbjct: 129 LTYDKLSMEANTDGHTGCYNKTYFNNRIELEVKKSKVTGDPLSLILFDLDHFKSLNDNYG 188

Query: 148 HPVGDKVIAFLSD--QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           H  GD V+  L+D  +   V    +F  R GGEEF      ++ +++  +A  LRK++++
Sbjct: 189 HDAGDFVLKELADVIRGGGVRDNDVFA-RYGGEEFVILLPKTNLKQSFEIAERLRKLVQD 247

Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
              N   G  + +T S G+A+ R      + +  RAD+++Y +K+ GRN+V
Sbjct: 248 HDFNY-EGKILPVTASIGVADYRQGVTSGTELFKRADESVYKSKEGGRNQV 297


>gi|260901119|ref|ZP_05909514.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|308109406|gb|EFO46946.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 527

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 91/192 (47%), Gaps = 17/192 (8%)

Query: 76  ITISLLLGYISGSILKELFISY-NRISQLSR---IDCLSGLLNHSAFISSLGS---YNEK 128
           + + L+L  I    LKE    + N ++QL +    D L+ L N       L     ++  
Sbjct: 337 LQLKLILSEIENKELKETTKQHKNTVAQLQQDVFTDPLTSLHNRRWLEVKLKDMLLHDTP 396

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAA 184
            +++  DID+FK IND   H VGDK I  +S +L   F    F G    R GGEEF    
Sbjct: 397 FALMVIDIDHFKSINDELSHLVGDKAIKSVSQELAAYFK---FKGASCVRFGGEEFLVIL 453

Query: 185 LGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
             S  + A + A + R +I + +  +I       +T+S GI      E      YRAD+A
Sbjct: 454 ENSQLERAEMHAENYRERIFKYAWRDILGERG--LTVSIGITLHREGENTQRTFYRADKA 511

Query: 244 LYVAKKSGRNRV 255
           LY AK +GRN+V
Sbjct: 512 LYRAKANGRNQV 523


>gi|163751104|ref|ZP_02158334.1| GGDEF domain protein [Shewanella benthica KT99]
 gi|161329060|gb|EDQ00132.1| GGDEF domain protein [Shewanella benthica KT99]
          Length = 127

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 69/124 (55%), Gaps = 2/124 (1%)

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            FDID FK IND +GH +GD  I   S +          VGR+GGEEF      +S++EA
Sbjct: 1   MFDIDNFKSINDRYGHHIGDLAIKAASKRTRRWLKKHDLVGRIGGEEFLIVLENTSKKEA 60

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSG 251
             +A+ +R  IE +Q+      ++  TIS G+A    H   +  ++ +AD ALY AK SG
Sbjct: 61  YNIADRIRHGIE-TQVFQFDDVTVEFTISLGVAALNEHTTSLLGLMKQADDALYRAKFSG 119

Query: 252 RNRV 255
           +N+V
Sbjct: 120 KNKV 123


>gi|90413448|ref|ZP_01221440.1| hypothetical GGDEF family protein [Photobacterium profundum 3TCK]
 gi|90325536|gb|EAS42013.1| hypothetical GGDEF family protein [Photobacterium profundum 3TCK]
          Length = 413

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 21/170 (12%)

Query: 106 IDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           ID L+ +    A  + L +  +  ++   DID+FK+ ND +GH  GD V+  ++ QL+  
Sbjct: 243 IDQLTNIPGRRALETELRNLGKTYTLAMLDIDHFKKFNDLYGHKTGDNVLTLVA-QLITK 301

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPS------- 215
            G    + R GGEEF     G   ++       LR  I    +   N +  P        
Sbjct: 302 VGGGAQMFRYGGEEFTILFKGKKSEQCEEHLEKLRIAIAEYNLVLRNYAERPDNDKQGCM 361

Query: 216 ----------IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                     IH+T+S GIA+         ++  AD ALY AK+SGRNR+
Sbjct: 362 TRKNNVIHSYIHVTVSIGIADSKPTSNPDMVLKAADDALYRAKESGRNRL 411


>gi|33601766|ref|NP_889326.1| hypothetical protein BB2790 [Bordetella bronchiseptica RB50]
 gi|33576203|emb|CAE33282.1| Conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 315

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 11/160 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ + N   F SS     E+       LS++ FD+DYFKQ ND +GH  GD+ +  ++
Sbjct: 149 DGLTNIANRRRFDSSFDLEWERARHERQPLSMLLFDVDYFKQYNDLYGHTQGDECLVEIA 208

Query: 160 DQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP---S 215
             L +    P   V R GGEEF      +  + A  +A   +++IE   I  +  P    
Sbjct: 209 QTLSLALDGPRDLVARYGGEEFVVLLPEADAEVARKVAERCQRLIEKKSIVHALSPHGRR 268

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + ++I AG      +   +  I   DQ LY AKK+GR+R+
Sbjct: 269 VTVSIGAGTVVPGGQTAPAGFIKAVDQQLYAAKKNGRHRI 308


>gi|65318053|ref|ZP_00391012.1| COG5001: Predicted signal transduction protein containing a
           membrane domain, an EAL and a GGDEF domain [Bacillus
           anthracis str. A2012]
          Length = 569

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 87/174 (50%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++        +  +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF        + E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHKQDEMRQLATSVLSCFQAP- 253

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306


>gi|330504353|ref|YP_004381222.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328918639|gb|AEB59470.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 394

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 110/234 (47%), Gaps = 21/234 (8%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGL--EYILVEN-LSLVIISITISLLLGYIS 86
           Y  +   +F A     A I    I L  F GL  +  LVE  ++L++I+++++       
Sbjct: 152 YVLLMHGLFYAAKAMTAVIPGALIDLNAFRGLIIQVSLVEGAMALMLIALSMT------- 204

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFK 140
           G++    +    RI +L+  D L+ L N  A  +  G   ++ S      ++  DID FK
Sbjct: 205 GTVR---WRREKRIERLAARDPLTALYNRRALEARAGKLLKETSPTRPGALLLIDIDNFK 261

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND  GH  GD+++  L + L  +        RLGG+EF      +S      L + LR
Sbjct: 262 QVNDLHGHLAGDRLLIALGEMLRALLPERALTARLGGDEFVILMDDASNARVVALGDALR 321

Query: 201 KIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +   +      + P ++ ++I A + +R     ++ +I + D ALY +K+ GRN
Sbjct: 322 QRFNHMAAQAFATPQAVTLSIGATLFDRPPAS-LAALIEQGDTALYQSKRGGRN 374


>gi|311279803|ref|YP_003942034.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Enterobacter cloacae SCF1]
 gi|308748998|gb|ADO48750.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Enterobacter cloacae SCF1]
          Length = 663

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 96/182 (52%), Gaps = 14/182 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    IS ++ + +E ++ IV+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRVLANTDTITGLPNRNAINDMISEAIATRDETQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           ++ND +GH  GD+++  ++  ++        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KVNDAYGHMFGDQLLQSVALSILSCLEEGQTLARLGGDEFIVLATNTSQGALEAMASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           N LR+      I + SG S+ I+++       H     ++I  AD A+Y AK+ GR +  
Sbjct: 339 NRLREPFRIGLIEVYSGCSLGISLAPQ-----HGSDRESLIRNADTAMYTAKEGGRGKFC 393

Query: 257 CF 258
            F
Sbjct: 394 VF 395


>gi|253996788|ref|YP_003048852.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera mobilis JLW8]
 gi|253983467|gb|ACT48325.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera mobilis JLW8]
          Length = 651

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 41/190 (21%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148
           S  +++ L+  D L+GL N   F+       +K       ++++F D+D FK++ND+ GH
Sbjct: 211 SEAQVTHLAHYDQLTGLPNRVLFLDRFKQDIKKAQRTGQIVTLMFLDLDKFKEVNDSLGH 270

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD ++  ++ +L         V R+GG+EF             I+ ND+     NSQ+
Sbjct: 271 DIGDMLLKDVARRLENCVRDSDTVARMGGDEF------------TIILNDI-----NSQV 313

Query: 209 NIS----------------SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSG 251
           NI                     IH++ S GI+     +  +  ++  ADQA+YVAK+ G
Sbjct: 314 NIERIAQDILNQLTMPFHLGDEVIHVSTSIGISNYPKDDTEVELLLKNADQAMYVAKEQG 373

Query: 252 RNRVVCFSDI 261
           RNR   F+ +
Sbjct: 374 RNRYQYFTPV 383


>gi|190574226|ref|YP_001972071.1| putative transmembrane GGDEF EAL domain signalling protein
           [Stenotrophomonas maltophilia K279a]
 gi|190012148|emb|CAQ45771.1| putative transmembrane GGDEF EAL domain signalling protein
           [Stenotrophomonas maltophilia K279a]
          Length = 711

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 78/146 (53%), Gaps = 15/146 (10%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           + +++F D+D FKQ+ND +GH  GD ++  ++++   +      + RLGG+EF       
Sbjct: 300 RFAVMFMDLDGFKQVNDAYGHQAGDALLVAVAERTRQLLRPHDMLARLGGDEFVLVVRIE 359

Query: 188 SEQEAAILANDLRKIIENSQINISSGP-----SIHITISAGIAERC--HKEPISTIIYRA 240
            +++   LA   R+I++     + SGP      + +T S G+A  C  H      ++  A
Sbjct: 360 HDEDLPTLA---RRILQ----AVGSGPLLPDNELQVTASIGVAI-CPDHAASERQLMAFA 411

Query: 241 DQALYVAKKSGRNRVVCFSDIENNTC 266
           D A+Y AK+SGRN  V F+D  NN+ 
Sbjct: 412 DAAMYQAKESGRNAFVLFADWMNNSA 437


>gi|157737788|ref|YP_001490472.1| EAL/GGDEF domain-containing protein [Arcobacter butzleri RM4018]
 gi|157699642|gb|ABV67802.1| EAL/GGDEF domain protein [Arcobacter butzleri RM4018]
          Length = 851

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 73/157 (46%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N   F       I     +N   +++  D D FK INDNFGH  GD ++  ++
Sbjct: 436 DPLTDLFNQRVFNDMMRYEIKRAQRHNYSFALMVIDCDNFKPINDNFGHSFGDTLLQTVA 495

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GG+EF       +E+EA I+AN + K +   +I    G +I IT
Sbjct: 496 TTLKKEKRDEDIVARYGGDEFTIILPECTEKEAMIVANRISKKMATEKIVAPDGSNIGIT 555

Query: 220 ISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           IS GI     H      +   AD  +Y AK+ G+N +
Sbjct: 556 ISIGICVYPTHTTSQKDMFIIADSMMYQAKEEGKNAI 592


>gi|90021242|ref|YP_527069.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89950842|gb|ABD80857.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 234

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 83/179 (46%), Gaps = 20/179 (11%)

Query: 97  YNRISQL-SRI---------DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYF 139
           YN I QL SRI         D L+GL N   F  S+    E+        S+   D+D+F
Sbjct: 32  YNHIQQLESRIAELTEQVNTDSLTGLYNRKHFNESIAQELERTQRSRQPTSLALIDLDHF 91

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND  GH  GD+V+  ++  +           R GGEE A     + +  A+ +A  L
Sbjct: 92  KVVNDTHGHIAGDEVLKAVAKAIGNTIRKLDIACRYGGEEIAVIFPSTYQLVASQVAERL 151

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256
           R+ IEN  +N   G +I IT S G+       KE     I R DQ LY AK  GRNRV 
Sbjct: 152 RQAIENCTVN-HGGSTIPITASIGVDTYTAQSKETAVQFIERVDQLLYDAKHLGRNRVA 209


>gi|28901333|ref|NP_800988.1| GGDEF family protein and [Vibrio parahaemolyticus RIMD 2210633]
 gi|260362889|ref|ZP_05775758.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
 gi|260880177|ref|ZP_05892532.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|260895294|ref|ZP_05903790.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|28809880|dbj|BAC62821.1| GGDEF family protein and [Vibrio parahaemolyticus RIMD 2210633]
 gi|308085653|gb|EFO35348.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|308092633|gb|EFO42328.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|308111967|gb|EFO49507.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
 gi|328469270|gb|EGF40216.1| GGDEF family protein and [Vibrio parahaemolyticus 10329]
          Length = 527

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 91/192 (47%), Gaps = 17/192 (8%)

Query: 76  ITISLLLGYISGSILKELFISY-NRISQLSR---IDCLSGLLNHSAFISSLGS---YNEK 128
           + + L+L  I    LKE    + N ++QL +    D L+ L N       L     ++  
Sbjct: 337 LQLKLILSEIENKELKETTKQHKNTVAQLQQDVFTDPLTSLHNRRWLEVKLKDMLLHDTP 396

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAA 184
            +++  DID+FK IND   H VGDK I  +S +L   F    F G    R GGEEF    
Sbjct: 397 FALMVIDIDHFKSINDELSHLVGDKAIKSVSQELAAYFK---FKGASCVRFGGEEFLVIL 453

Query: 185 LGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
             S  + A + A + R +I + +  +I       +T+S GI      E      YRAD+A
Sbjct: 454 ENSQLERAEMHAENYRERIFKYAWRDILGERG--LTVSIGITLHREGENTQRTFYRADKA 511

Query: 244 LYVAKKSGRNRV 255
           LY AK +GRN+V
Sbjct: 512 LYRAKANGRNQV 523


>gi|320155462|ref|YP_004187841.1| c-di-GMP phosphodiesterase A-related protein [Vibrio vulnificus
           MO6-24/O]
 gi|319930774|gb|ADV85638.1| C-di-GMP phosphodiesterase A-related protein [Vibrio vulnificus
           MO6-24/O]
          Length = 657

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 93/171 (54%), Gaps = 12/171 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFF--DIDYFKQINDNFGHPV 150
           ++++QL+  D L+GL N S  + SL      S +E+   V F  D+D FK IND+ GH +
Sbjct: 206 SQLNQLAYFDTLTGLANRSLLLKSLNETLKESQSEQYPGVLFYLDLDRFKTINDSLGHTI 265

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD ++  ++ +L           R+GG+EFA      ++++AA  A  L  +I N   +I
Sbjct: 266 GDNLMRTIAKRLEAWLQPGEIAARIGGDEFAILIPKLNKEDAANKAKQLLTLISNP-YSI 324

Query: 211 SSGPSIHITISAGIAERCHKEPISTI--IYRADQALYVAKKSGRNRVVCFS 259
                ++ T+S GI+    K  IS+I  + +AD ALY AK +GRN+ + + 
Sbjct: 325 DDH-QLYCTVSIGISTFADK-GISSIDVLRQADTALYRAKVAGRNKYMFYE 373


>gi|307608779|emb|CBW98168.1| hypothetical protein LPW_00301 [Legionella pneumophila 130b]
          Length = 976

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 4/137 (2%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           N+KL+++F D+D FKQIND+ GH +GD ++  LS++ + +      + RLGG+EF     
Sbjct: 580 NQKLAVLFLDLDEFKQINDSLGHAIGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILE 639

Query: 186 G-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQA 243
               +++A I+A   R+I   SQ  +     + ++ S GIA    H +   T++  AD A
Sbjct: 640 NIMQDKDAEIIAKKCREIC--SQPFVIESQELLVSTSIGIAIYPEHGKDAKTLMRNADTA 697

Query: 244 LYVAKKSGRNRVVCFSD 260
           +Y +K  G+N    F +
Sbjct: 698 MYQSKIRGKNNWTVFQN 714


>gi|302531697|ref|ZP_07284039.1| predicted protein [Streptomyces sp. AA4]
 gi|302440592|gb|EFL12408.1| predicted protein [Streptomyces sp. AA4]
          Length = 496

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 19/172 (11%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D  +GLLN   F +          +  +  +++  DID FK  N   GHP GDKV+  ++
Sbjct: 298 DARTGLLNRRGFDALAAAAVDLDHANGQPTTMLMLDIDRFKWWNSRIGHPGGDKVLEAVA 357

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ---INISSGPSI 216
             L         + R GGEE A    G+   +A  +A  +R+ +E  +   +N + G +I
Sbjct: 358 TVLRTETRAGDILARTGGEEMAVVLPGTEWTKAVDIAERIRRSVEKLETKVVNPAGGDTI 417

Query: 217 HI--------TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +        TIS G+A    +   I+ +   +DQAL VAK++GRN+VV  +
Sbjct: 418 RLGHDGLPRCTISIGVATSPEQGTDIAALERYSDQALEVAKQNGRNQVVALA 469


>gi|289207865|ref|YP_003459931.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Thioalkalivibrio sp. K90mix]
 gi|288943496|gb|ADC71195.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Thioalkalivibrio sp. K90mix]
          Length = 1301

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 87/173 (50%), Gaps = 12/173 (6%)

Query: 90   LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
            L  L  S N +  L++ D L+ L N S   + LG   E+       L+++  D+D FK +
Sbjct: 851  LSALKRSQNELEYLAQHDSLTDLPNRSQLQTLLGRALERARAERRGLAVLCLDLDRFKTL 910

Query: 143  NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
            ND+ GH VGD+V+  ++ +L  V  +P  +GRLGG+EF A    +   E A      R +
Sbjct: 911  NDSLGHSVGDRVLLEVARRLADVLESPDLLGRLGGDEFLAVLESADTHELA--EERARAL 968

Query: 203  IENSQ--INISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGR 252
            +E  Q    +  G  +++  S G++      + +  +I  AD A+Y AK  GR
Sbjct: 969  LEVLQRPFVLDDGQVVYVNASIGVSRFPADGDTVVDLIQHADAAMYHAKALGR 1021


>gi|255593783|ref|XP_002535949.1| conserved hypothetical protein [Ricinus communis]
 gi|223521420|gb|EEF26433.1| conserved hypothetical protein [Ricinus communis]
          Length = 237

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 39/203 (19%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------------NEKLS-------- 130
           +F +Y  +   S  D L+GL N   F      Y              +E+          
Sbjct: 27  VFCNYQSLLDYSERDALTGLFNRKTFDEQFTRYAFAIAPHEAHSMEQDERRHDSAEAQDD 86

Query: 131 ------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
                 +   DID+FKQ+ND +GH  GD+V+  +++ L   F +   + R GGEEF    
Sbjct: 87  EPKGHWLAVVDIDHFKQVNDRYGHLYGDEVLILVANILRASFRSHDRIFRFGGEEFVILL 146

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSG--PSI-HITISAGIAERCHKEPISTIIYRAD 241
             ++        +D RKI +  + N+     P +  +T+S G      + P+  I+  AD
Sbjct: 147 RSTT-------LSDARKIFDRFRQNVQEYDFPQVGKVTVSLGFVGIARETPV-VILGHAD 198

Query: 242 QALYVAKKSGRNRVVCFSDIENN 264
           QALY AKK+GRNR+  + ++ N+
Sbjct: 199 QALYHAKKTGRNRICYYQELVNS 221


>gi|254458212|ref|ZP_05071638.1| sensory box/ggdef family protein [Campylobacterales bacterium GD 1]
 gi|207085048|gb|EDZ62334.1| sensory box/ggdef family protein [Campylobacterales bacterium GD 1]
          Length = 505

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 13/168 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I ++S  D L+ + N   F       I +    NE +  +  D+D+FKQ ND +GH +GD
Sbjct: 329 IEKISITDGLTNIYNRRHFDNLFPQIIKTSRRNNELVCFLIMDVDHFKQYNDTYGHQMGD 388

Query: 153 KVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            V+  L+  L         +  RLGGEEF       S+Q+A I+AN LR+ IE+ +I   
Sbjct: 389 GVLIDLATVLTNNLKRDDDYCFRLGGEEFGVLFKSDSKQKAEIIANKLRESIEDLKIE-H 447

Query: 212 SGPSIHITISAGIAERCHKEP---ISTIIYR-ADQALYVAKKSGRNRV 255
            G S    ++A +   C K         +Y+ AD  LY AK++GRN+V
Sbjct: 448 KGNSASSFVTASVGLVCLKAQDIVDEAQVYKMADDLLYQAKENGRNKV 495


>gi|254459065|ref|ZP_05072488.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207084336|gb|EDZ61625.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 620

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 83/175 (47%), Gaps = 9/175 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYF 139
           IS + +    I +  + + S  D L+G LN   F +++ S     Y EK+ IV  DID+F
Sbjct: 446 ISFTDISNTMIEHTNLKRKSTHDKLTGALNREFFDNNIKSIIKDMYPEKMGIVLCDIDHF 505

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND +GH  GD V+   +  +        ++ R GGEEF      ++          +
Sbjct: 506 KDVNDTYGHNRGDNVLKEFTTIIKDSIRDSDYLIRWGGEEFIVLMKVNTIDSLQRATEHM 565

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           RK IE+ +     G    IT S GI      E I   + R D+ALY AK +GRN+
Sbjct: 566 RKHIESYKFE-EVGT---ITSSFGITLHIENEKILDTLERVDKALYKAKNNGRNQ 616


>gi|209548847|ref|YP_002280764.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534603|gb|ACI54538.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 709

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 90/180 (50%), Gaps = 31/180 (17%)

Query: 98  NRISQLSRI-------DCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQIND 144
            R+ QL++        D LSGLLN    +S      S GS   +L +V  D+D FK +ND
Sbjct: 281 RRLRQLAQAALFEAGHDSLSGLLNRHGLLSLLEEFKSSGSSPPRLYLV--DLDGFKAVND 338

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII- 203
            +GH VGD +I  +S+ L       +   RLGG+EFA   +GS+  E      D+ K I 
Sbjct: 339 AWGHAVGDDLIRLVSNALTACHPEVVAAARLGGDEFALVHVGSATCE------DMEKTIL 392

Query: 204 ----ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
               E  +I+   G +I +  S G A      EP+  ++ RAD ALY AK +GR + + +
Sbjct: 393 ALFAEPFKID---GRTIEVGASIGAAAGDAGIEPLE-LLRRADMALYRAKANGRGQAIEY 448


>gi|148975939|ref|ZP_01812728.1| Intracellular signaling protein (PAS,GAF,GGDEF domains)
           [Vibrionales bacterium SWAT-3]
 gi|145964684|gb|EDK29937.1| Intracellular signaling protein (PAS,GAF,GGDEF domains)
           [Vibrionales bacterium SWAT-3]
          Length = 357

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 75/134 (55%), Gaps = 6/134 (4%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAA 183
           K ++   DID+FK +ND +GH +GD V+  +++ L        FV R GGEEF     + 
Sbjct: 213 KGTLAVVDIDFFKSVNDGYGHQMGDVVLKKVANVLSSNAQEGEFVARFGGEEFVIWYPST 272

Query: 184 ALGSSEQEAAILANDLRKI-IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
            + + E + A L  +++KI ++   I IS G + H  +S+G         + ++I  AD+
Sbjct: 273 PVNTVEDKLATLLEEVKKITLDRKPITISIG-ACHFELSSGETRNERMSALDSLIKVADE 331

Query: 243 ALYVAKKSGRNRVV 256
            LYVAKK+GR++ V
Sbjct: 332 CLYVAKKNGRDQFV 345


>gi|120613376|ref|YP_973054.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
 gi|120591840|gb|ABM35280.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
          Length = 377

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 13/176 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIN 143
           +E+    +++ + +  D L+GL N        ++ I+  G+    LS++  DID+FK+IN
Sbjct: 199 EEIRALQDQLQEQAVRDPLTGLYNRRHLDATLASEIARCGAQGLPLSLMMIDIDHFKRIN 258

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD ++  L+  L           RLGGEEF      +    A   A  LR+  
Sbjct: 259 DTHGHAAGDAMLQALAQLLQRHVRVRDLACRLGGEEFVLLLPETPLAVARERAEALREAF 318

Query: 204 ENSQINISSGPSI-HITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E  Q+     P +   T+S G+A   +  ++P++ +   AD+ALY AK  GRNRVV
Sbjct: 319 EALQVR--HDPEVLSATLSCGVAAFPQHARQPLA-LTASADEALYAAKMQGRNRVV 371


>gi|222055390|ref|YP_002537752.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. FRC-32]
 gi|221564679|gb|ACM20651.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. FRC-32]
          Length = 912

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 87/179 (48%), Gaps = 27/179 (15%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
           + I QL+  D L+GL N S     LG         N K++I+F D+D FK IND  GH  
Sbjct: 476 DEIQQLAYYDTLTGLPNRSLLQDRLGQGIVQAVRDNRKVAIMFLDLDRFKSINDTLGHVA 535

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIEN--- 205
           GD ++A ++++L         V R+GG+EF    +A+  +E        DL KI E    
Sbjct: 536 GDSLLATVAERLTECVRETDTVARIGGDEFVIIISAIEHAE--------DLNKIAEKILA 587

Query: 206 --SQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCFS 259
             S+  + +   I IT S GIA   + E    +  ++  AD A+Y AK  G+N    FS
Sbjct: 588 AISKPLVLNDQEIFITASIGIA--IYPEDGTDVQGLLKNADLAMYKAKDQGKNAFQYFS 644


>gi|325918920|ref|ZP_08180991.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325534854|gb|EGD06779.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 375

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 100/200 (50%), Gaps = 16/200 (8%)

Query: 71  LVIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
           +VI ++  +LLLG   ++    L+ +  +  ++S  + +D L+G+ N  AF   L     
Sbjct: 175 VVIATLGCALLLGVGIWLDLQ-LRRMHRNEAKLSSEAWVDALTGIANRRAFDHQLSQALQ 233

Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEE 179
                   LS++  D+D+FK  ND +GH  GD  +  ++  +      +     R GGEE
Sbjct: 234 EAVRLQSPLSVLMLDVDHFKLYNDTYGHVNGDACLRLIAGAITGCARRSNDVAARYGGEE 293

Query: 180 FAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIAERCHKE-PIST-- 235
           F      +    A  LA+ +R  + E   +++SS  S H+T+S G A     E P+S+  
Sbjct: 294 FGMILTHTDAAGALRLADAVRSAVAELGLMHLSSPTSAHVTVSVGAATFEPGEVPMSSDD 353

Query: 236 IIYRADQALYVAKKSGRNRV 255
           I++ AD ALY AK+ GR+R 
Sbjct: 354 IVHDADSALYRAKQRGRDRA 373


>gi|258622585|ref|ZP_05717607.1| GGDEF regulator [Vibrio mimicus VM573]
 gi|258585285|gb|EEW10012.1| GGDEF regulator [Vibrio mimicus VM573]
          Length = 314

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 20/183 (10%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +++  D LS L N   F   L          +E L++V  DID FK+ ND+FGH  GD
Sbjct: 135 LDKMAHTDSLSSLANRLKFDEQLNVEFRRSRRQSEPLTVVMVDIDEFKKFNDHFGHIAGD 194

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           + I  ++  L  +   P     R GGEEFA     + E+ A  + N+L   +E  Q+ I+
Sbjct: 195 ECIRKIAHTLRSITKRPADLAARYGGEEFALILPSTEEEGAKSMVNELINAVE--QLEIA 252

Query: 212 SGPSIH---ITISAG----IAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIE 262
             P      +T+S G      E+   E +    +   AD ALY +K++GRN+   F  I 
Sbjct: 253 HSPEAMNQCVTVSVGYTVLYPEQVDFEQLKAVDVAQTADNALYTSKRNGRNQAT-FEPIP 311

Query: 263 NNT 265
             T
Sbjct: 312 TTT 314


>gi|253732806|ref|ZP_04866971.1| ABC superfamily ATP binding cassette transporter, binding protein
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|253729171|gb|EES97900.1| ABC superfamily ATP binding cassette transporter, binding protein
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|320139920|gb|EFW31781.1| diguanylate cyclase domain protein [Staphylococcus aureus subsp.
           aureus MRSA131]
          Length = 280

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 9/168 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
           NR     + D L+GL N   F   L   + K       ++++  DID FK +ND + H  
Sbjct: 106 NRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHKS 165

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  +S  L         + R GGEEF+      S  ++  LA ++R  +E S  ++
Sbjct: 166 GDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFHL 225

Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
            +   I +++S G+      +P S   +   AD  ++VAK  GRN+V+
Sbjct: 226 PNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVM 273


>gi|194444703|ref|YP_002040953.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194403366|gb|ACF63588.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 663

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRTQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFS 259
            FS
Sbjct: 394 VFS 396


>gi|330968247|gb|EGH68507.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 493

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 92/191 (48%), Gaps = 11/191 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGS 124
           LS+V+  I +  L+  +  S   +L ++      L+R D LSGLLN   F    ++ L  
Sbjct: 30  LSMVVPFILLKRLMQRLQTSY-NDLLVAQALSDSLARHDPLSGLLNRRVFNEQLVARLQQ 88

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAA 183
            + + ++   D+D FK IND  GH +GD  I  +++ L     G    V RLGG+EF+ A
Sbjct: 89  ESTQTAVFLIDLDKFKLINDTHGHAMGDAAICAVAESLRDATTGWQASVARLGGDEFSLA 148

Query: 184 ALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRAD 241
             G   Q E A LA ++   I  S   +   P + ++ + G+A           ++ RAD
Sbjct: 149 VSGDFSQFELAALAENVLAKIAMSSAGL---PRVTLSATLGVAISPLDGSDAEVLLQRAD 205

Query: 242 QALYVAKKSGR 252
            A+Y  K  GR
Sbjct: 206 SAMYRGKNGGR 216


>gi|330719962|gb|EGG98419.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [gamma proteobacterium IMCC2047]
          Length = 346

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 12/174 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNE---KLSIVFFDIDYFKQ 141
           ++K+L   +   SQ +R D L+   N  AF    + ++  Y       S+   DID FK 
Sbjct: 173 VVKDLTEEHELKSQ-ARTDSLTHANNRRAFDDALLETINRYKRVGTAFSLALIDIDDFKI 231

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH  GD+V+  L+ ++  +F    F  R GGEEFA     ++   A  +    R 
Sbjct: 232 INDTMGHEYGDEVLVRLAQRVAGLFRGRYFFARWGGEEFALIMEATNVDGALEICEKTRA 291

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +E  Q+ +    S+ +TIS GIAE   +     ++  AD+ALY +K+ G+N+ 
Sbjct: 292 AVE--QLFLPD--SVSVTISLGIAEHREEMGAEQLVDCADKALYQSKQQGKNQT 341


>gi|237798210|ref|ZP_04586671.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021062|gb|EGI01119.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 712

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 95/187 (50%), Gaps = 18/187 (9%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEK----LSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++ S    NE+    L +
Sbjct: 254 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNEQADKYLVV 310

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189
           +F D+D FKQIND  GH  GD+V+ +++ Q          + R+GG+EF      L   E
Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAQQFKDCMRPYDVLARVGGDEFTVVIDGLDYPE 370

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247
           Q A I    + ++    Q++   G  I +  S GIA    C    +  ++  AD A+Y A
Sbjct: 371 QAAKIAEKLIDRVSGRRQVD---GVDITVGASVGIATFPDCGSN-LDGLLRAADIAMYEA 426

Query: 248 KKSGRNR 254
           K++GR +
Sbjct: 427 KRAGRQQ 433


>gi|254459398|ref|ZP_05072819.1| ggef/eal/pas/pac-domain containing protein [Campylobacterales
           bacterium GD 1]
 gi|207084011|gb|EDZ61302.1| ggef/eal/pas/pac-domain containing protein [Campylobacterales
           bacterium GD 1]
          Length = 835

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 90/172 (52%), Gaps = 10/172 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
           N++ +L+  D L+G  N +   S L          N+  +++  D+D+FK IND++GH +
Sbjct: 406 NKLERLANFDTLTGFANRTFLFSYLQKVVHRCKRNNKIAALLVLDMDHFKDINDSYGHDI 465

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQIN 209
           GD+++A ++ +L        F+ RL G++FA      ++  +AA+ A ++ + +E     
Sbjct: 466 GDELLALIAKRLSTRIRGGDFIARLDGDKFAIILEDINNSDDAAMFAKEIMEEVEKP-FY 524

Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +S+   +HI  +AGI     + E    +I  AD ALY  KK  R  +  +SD
Sbjct: 525 LSNTSEVHICSTAGIVIAPENAETAEELIQFADTALYKGKKDKRGGISYYSD 576


>gi|170759024|ref|YP_001786604.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169406013|gb|ACA54424.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 419

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 25/217 (11%)

Query: 56  TPFYGLEYILVENLSLVIISITISL-LLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           T FYG E       +  +I+I   L +  YI    + E  I  ++  Q++  D L+ L N
Sbjct: 216 THFYGEE-------TTKLINIEGELGIATYIRD--ITERKIYNDKTKQMAYFDSLTELPN 266

Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
            ++F+  L             L+I+F D+D FK++NDNFGH  GDK++  ++ ++     
Sbjct: 267 RNSFLKQLEHEIKLSRKKQNLLAIMFLDLDKFKEVNDNFGHCTGDKLLWQVAKRVKNTIS 326

Query: 168 TPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA- 225
           +   + R GG+EF       + E++   LA D+ ++ +   I I  G  ++I  S GI+ 
Sbjct: 327 SKDLIARFGGDEFTILIRNIAHEKQVEDLARDIIEVFKEP-ICI-EGIYVNIKTSIGISF 384

Query: 226 --ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  H      +I +AD+A+Y AKK G N+   + D
Sbjct: 385 FPKDGH--TSQELIKKADKAMYDAKKRGSNKFQIYKD 419


>gi|83716280|ref|YP_438410.1| GGDEF domain-containing protein [Burkholderia thailandensis E264]
 gi|167614862|ref|ZP_02383497.1| GGDEF domain protein [Burkholderia thailandensis Bt4]
 gi|257141447|ref|ZP_05589709.1| GGDEF domain-containing protein [Burkholderia thailandensis E264]
 gi|83650105|gb|ABC34169.1| GGDEF domain protein [Burkholderia thailandensis E264]
          Length = 462

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 88/173 (50%), Gaps = 11/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           + L+ ++  + + +  D L+ + N S F          +  +N  +++V  D+D+FKQ N
Sbjct: 275 RRLYDAHASLVRTASHDALTMVYNRSYFNEQFERAFDYVRRHNLPIALVMVDVDHFKQYN 334

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD  +A ++  L  V      FV R GGEEFA    G+ E+ AA +A   R+ 
Sbjct: 335 DTFGHLQGDTCLAAVAAALSGVASRAADFVARYGGEEFAVVLPGTDERGAAAIAEQARQS 394

Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
           +E  +I   + P  ++T+SAG A       E    ++  AD ALY AK  GRN
Sbjct: 395 VERLRIAADTSPG-YVTVSAGYAATSGNPFETPGALVAAADAALYRAKMLGRN 446


>gi|30260782|ref|NP_843159.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames]
 gi|47525907|ref|YP_017256.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183620|ref|YP_026872.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne]
 gi|165872950|ref|ZP_02217573.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488]
 gi|167635210|ref|ZP_02393526.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442]
 gi|170689008|ref|ZP_02880208.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465]
 gi|170708489|ref|ZP_02898931.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389]
 gi|190568528|ref|ZP_03021434.1| sensory box/GGDEF family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227816502|ref|YP_002816511.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684]
 gi|229604486|ref|YP_002865226.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248]
 gi|254684295|ref|ZP_05148155.1| sensory box/GGDEF family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254742030|ref|ZP_05199717.1| sensory box/GGDEF family protein [Bacillus anthracis str. Kruger B]
 gi|254754984|ref|ZP_05207018.1| sensory box/GGDEF family protein [Bacillus anthracis str. Vollum]
 gi|254762284|ref|ZP_05214128.1| sensory box/GGDEF family protein [Bacillus anthracis str. Australia
           94]
 gi|30254231|gb|AAP24645.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames]
 gi|47501055|gb|AAT29731.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177547|gb|AAT52923.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne]
 gi|164711304|gb|EDR16858.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488]
 gi|167529469|gb|EDR92220.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442]
 gi|170126610|gb|EDS95495.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389]
 gi|170666993|gb|EDT17756.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465]
 gi|190560322|gb|EDV14301.1| sensory box/GGDEF family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227006073|gb|ACP15816.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684]
 gi|229268894|gb|ACQ50531.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248]
          Length = 567

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 87/174 (50%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++        +  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF        + E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHKQDEMRQLATSVLSCFQAP- 251

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 252 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304


>gi|226945987|ref|YP_002801060.1| guanylyl cyclase [Azotobacter vinelandii DJ]
 gi|226720914|gb|ACO80085.1| guanylyl cyclase [Azotobacter vinelandii DJ]
          Length = 415

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 10/161 (6%)

Query: 107 DCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ + N  AF S          +     +++  D+D+FK++ND  GH +GD  +    
Sbjct: 258 DPLTDIGNRRAFTSGGEVLLARCAAEGRPAALLLCDLDHFKRLNDTHGHAMGDAALVAFG 317

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L +        GR+GGEEFA    G+    +  +A  +R+    S++++  G  + ++
Sbjct: 318 RLLALGVRQQDICGRIGGEEFACLLPGADRTVSLQVAERIRQAC--SELSLEPGVRVSVS 375

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           I    +E+   + +S ++  +DQALY AK +GR+RV C +D
Sbjct: 376 IGVASSEQAGYD-LSRLLALSDQALYRAKANGRDRVECSAD 415


>gi|254503388|ref|ZP_05115539.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
 gi|222439459|gb|EEE46138.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
          Length = 273

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 76/155 (49%), Gaps = 14/155 (9%)

Query: 112 LLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           L NH   + +       LS+   DID+FK +ND +GH  GD+ +  ++  L         
Sbjct: 109 LCNHE--LKARSRTEAPLSVALLDIDHFKSVNDTYGHAAGDEALRVVARTLENSLRQSDV 166

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAGIAERCHK 230
           V R GGEEF+     ++ + A+ LA+ LRK +  S+I I   G S  +T S G+A     
Sbjct: 167 VCRWGGEEFSLLMPRTNSENASGLADRLRKTL--SEIVIKEGGTSFSLTASFGVATMAGP 224

Query: 231 EP---------ISTIIYRADQALYVAKKSGRNRVV 256
            P         I  +   AD ALY AK +GRN+V+
Sbjct: 225 NPACKATGADAIDLLFKDADDALYKAKDAGRNKVI 259


>gi|254502336|ref|ZP_05114487.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222438407|gb|EEE45086.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 852

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 15/210 (7%)

Query: 66  VENLSLVIISITISLLLGYISG--SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           VEN  LVI+ I  + L+ +        +EL  +   I+ ++  D L+GL N      +L 
Sbjct: 378 VENGDLVILRIDTTELVRHRRALERNSEELKKANAEITHMALHDDLTGLGNRRYLAKTLE 437

Query: 124 SYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
            + E+       ++ +  D+D FKQIND  GH  GD V+   ++++ +V      V R+G
Sbjct: 438 EFTERRQATGGEIAALHIDLDRFKQINDTMGHRAGDDVLVEAANRIRLVLEPAEAVARIG 497

Query: 177 GEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           G+EF     L  S    A LAN L K +  S+   +      +  S GIAE    E +  
Sbjct: 498 GDEFVVLVPLSDSSDRPADLANTLLKDL--SRPVRTHDKECRVGASIGIAETPLSE-VEN 554

Query: 236 IIYRADQALYVAKKSGRNRVVCF--SDIEN 263
           ++  +D ALY AK  GR R+  +  SD+E+
Sbjct: 555 LLTNSDVALYKAKHRGRGRIEVYDCSDLED 584


>gi|170747430|ref|YP_001753690.1| diguanylate cyclase [Methylobacterium radiotolerans JCM 2831]
 gi|170653952|gb|ACB23007.1| diguanylate cyclase [Methylobacterium radiotolerans JCM 2831]
          Length = 352

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 82/157 (52%), Gaps = 9/157 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F  +L +  E        +S++  DID+FK+ ND +GH  GD+V+  ++
Sbjct: 183 DALTGLANRKHFEETLKASMETARARTTPMSLIILDIDFFKRFNDLYGHLTGDQVLRLVA 242

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INISSGPSI-H 217
             +    G    + R GGEEF     G     A  +A  +R  +   + +  S+G S+  
Sbjct: 243 IVMRENAGKQAQLARFGGEEFGIILPGVDRAVAKQVAETVRTSVMGRELVKRSTGESLGK 302

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           ITIS G+A     +  ++++ RAD  ++ AK++GRNR
Sbjct: 303 ITISLGVAVLRPGDTPASLMERADLCMFAAKRAGRNR 339


>gi|161620679|ref|YP_001594565.1| diguanylate cyclase [Brucella canis ATCC 23365]
 gi|254702991|ref|ZP_05164819.1| GGDEF domain-containing protein [Brucella suis bv. 3 str. 686]
 gi|256157691|ref|ZP_05455609.1| GGDEF domain-containing protein [Brucella ceti M490/95/1]
 gi|256253337|ref|ZP_05458873.1| GGDEF domain-containing protein [Brucella ceti B1/94]
 gi|161337490|gb|ABX63794.1| diguanylate cyclase (GGDEF) domain [Brucella canis ATCC 23365]
          Length = 237

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 23/229 (10%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY- 97
           IAT+I I+       G+    G++   V  L  +++   I++ LG    S L+EL  SY 
Sbjct: 18  IATIISIS----LSTGIRFALGVKSDTVTILVRLLLPFLIAMPLGVFWFSRLEELERSYR 73

Query: 98  ------NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFGH 148
                 N +++++ +D L+GLLN  +FI    + N+     +F   D+DY KQIND +GH
Sbjct: 74  TAVKRANELARVASVDPLTGLLNRRSFIQQFNAANKAGVRGWFLIVDVDYLKQINDQYGH 133

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILAN-DLRK--IIE 204
           P GD  I  ++  L     +   + R+GG+EF A    G+     ++L++  LR   ++ 
Sbjct: 134 PAGDDAIIAVAQALEDCLSSDSLIARIGGDEFCAFVPKGAINDVDSVLSDISLRADGLLR 193

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             + N+ S     +T+S G       +    ++  AD+ LY  KKS R 
Sbjct: 194 EKRPNVGS----SLTVSVGRISCKTGQIFEEVLSIADEQLY-RKKSQRQ 237


>gi|86749282|ref|YP_485778.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
 gi|86572310|gb|ABD06867.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
          Length = 818

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 88/165 (53%), Gaps = 17/165 (10%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151
           +I+ ++  D L+ L N + +   L    E       +++++  D+D FK +ND+FGHP+G
Sbjct: 384 KIAHMAHHDGLTNLPNRALYQERLQQALEQARGGGGRVAVLCIDLDLFKNVNDSFGHPMG 443

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILANDLRKII----ENS 206
           D+++  ++D+L    G    V RLGG+EFA   A  +S  EA+ +A  L +++    +  
Sbjct: 444 DRLLRCVADRLRAQIGGNDLVARLGGDEFAVVLASVASPNEASDVAARLIELVSAPYDMD 503

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
            + +  G SI I ++ G  + C       ++  AD ALY AK +G
Sbjct: 504 GLEVVIGASIGIALAPGDGDDC-----DVLMRSADMALYRAKAAG 543


>gi|226225788|ref|YP_002759894.1| putative signaling protein [Gemmatimonas aurantiaca T-27]
 gi|226088979|dbj|BAH37424.1| putative signaling protein [Gemmatimonas aurantiaca T-27]
          Length = 966

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 82/160 (51%), Gaps = 10/160 (6%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N S F+  +G         +  ++++F D+D FK +ND+ GH  GD+++   +
Sbjct: 525 DPLTDLANRSLFLYQVGHALARGARQHSPVTVLFLDLDNFKTVNDSLGHAAGDRLLVDAA 584

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
            +L     +   + RLGG+EFA       S +E  ++A+ +   +  S+  + SG  + +
Sbjct: 585 RRLASCVRSSDLIARLGGDEFAVLVEDAQSVEEVLVVASRIGTAL--SRPFMLSGKEVFV 642

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + S GIA     E    ++  AD A+YVAK  G+ + V F
Sbjct: 643 SASVGIARSSRGESSDELVRNADVAMYVAKTRGKGQHVLF 682


>gi|196047149|ref|ZP_03114366.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108]
 gi|196022019|gb|EDX60709.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108]
          Length = 567

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 87/174 (50%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++        +  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF        + E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHKQDEMRQLATSVLSCFQAP- 251

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 252 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304


>gi|86147939|ref|ZP_01066243.1| putative GGDEF family protein [Vibrio sp. MED222]
 gi|85834264|gb|EAQ52418.1| putative GGDEF family protein [Vibrio sp. MED222]
          Length = 488

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 10/162 (6%)

Query: 101 SQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            +L+  D ++GLLN     AF  S+  +++  ++  FDID FK IND FGH  GD VI +
Sbjct: 330 KELAAKDPMTGLLNRRGLEAFWRSV-EHDQLFALTVFDIDNFKLINDTFGHDKGDDVIRY 388

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +S Q+     +     R GGEEF     G   +        ++  +  +  NI       
Sbjct: 389 MSRQISNSIRSSDVAARFGGEEFVVYLKGDDRETLMRTLERVKNAVCANSANIVPNG--- 445

Query: 218 ITISAG--IAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            T+S G  I E  H       I   AD+ LYVAK +G++R+V
Sbjct: 446 FTVSGGVCITEAEHNNLSFEEIFKHADEKLYVAKTTGKDRIV 487


>gi|116054017|ref|YP_788459.1| sensory box GGDEF domain-containing protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115589238|gb|ABJ15253.1| putative sensory box/GGDEF domain protein [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 323

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 11/166 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+   N   F  S   ++ E       L+ +  D+D FK+IND FGH VGD
Sbjct: 158 LQRLATTDVLTQSSNRRYFFDSAEAAFKECRREGIPLAFLLLDVDDFKKINDRFGHQVGD 217

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  ++             GR+GGEEFA    G  EQ A  +   L++ ++  ++    
Sbjct: 218 QVLQRIAQSGSAALRRGDLFGRIGGEEFAVLLPGCDEQTARQIGERLQREVQ--RLRFQE 275

Query: 213 GP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  S  IT+S G+   +   E +  +  RAD A+Y AK+ G++ +V
Sbjct: 276 GEQSFGITVSQGLTVLQADDEGLGALYSRADAAMYSAKRQGKDCIV 321


>gi|197248127|ref|YP_002146327.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197211830|gb|ACH49227.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 663

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF    A  +  + E  A+ + 
Sbjct: 279 KINDTYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIILAAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFS 259
            FS
Sbjct: 394 VFS 396


>gi|107099271|ref|ZP_01363189.1| hypothetical protein PaerPA_01000283 [Pseudomonas aeruginosa PACS2]
 gi|296386781|ref|ZP_06876280.1| putative sensory box/GGDEF domain protein [Pseudomonas aeruginosa
           PAb1]
 gi|313112100|ref|ZP_07797883.1| putative sensory box/GGDEF domain-containing protein [Pseudomonas
           aeruginosa 39016]
 gi|310884385|gb|EFQ42979.1| putative sensory box/GGDEF domain-containing protein [Pseudomonas
           aeruginosa 39016]
          Length = 323

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 11/166 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+   N   F  S   ++ E       L+ +  D+D FK+IND FGH VGD
Sbjct: 158 LQRLATTDVLTQSSNRRYFFDSAEAAFKECRREGIPLAFLLLDVDDFKKINDRFGHQVGD 217

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  ++             GR+GGEEFA    G  EQ A  +   L++ ++  ++    
Sbjct: 218 QVLQRIAQSGSAALRRGDLFGRIGGEEFAVLLPGCDEQTARQIGERLQREVQ--RLRFQE 275

Query: 213 GP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  S  IT+S G+   +   E +  +  RAD A+Y AK+ G++ +V
Sbjct: 276 GEQSFGITVSQGLTVLQADDEGLGALYSRADAAMYSAKRQGKDCIV 321


>gi|21109198|gb|AAM37742.1| response regulator [Xanthomonas axonopodis pv. citri str. 306]
          Length = 339

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 16/200 (8%)

Query: 71  LVIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
           +V+ ++  +LLLG   ++    L+ +  +  ++S  + +D L+G+ N  AF   L     
Sbjct: 139 IVVAALGCTLLLGVGIWLDLQ-LRRMHRNEAKLSTEAWVDALTGIANRRAFDHRLSRALQ 197

Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEE 179
                   LS++  D+D+FK  ND +GH  GD  +  ++  +      +     R GGEE
Sbjct: 198 DAVRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCSRRSEDLAARYGGEE 257

Query: 180 FAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIAE-RCHKEPIS--T 235
           F      +    A  LA+ +R  + E   +++SS  S H+T+S G A     + P+S   
Sbjct: 258 FGMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGAATFEPGEAPLSPNA 317

Query: 236 IIYRADQALYVAKKSGRNRV 255
           I++ AD ALY AK+ GRNR 
Sbjct: 318 IVHDADSALYRAKQKGRNRT 337


>gi|23500362|ref|NP_699802.1| GGDEF domain-containing protein [Brucella suis 1330]
 gi|225629108|ref|ZP_03787141.1| GGDEF domain protein [Brucella ceti str. Cudo]
 gi|254695669|ref|ZP_05157497.1| GGDEF domain-containing protein [Brucella abortus bv. 3 str. Tulya]
 gi|256015395|ref|YP_003105404.1| GGDEF domain protein [Brucella microti CCM 4915]
 gi|260568096|ref|ZP_05838565.1| diguanylate cyclase [Brucella suis bv. 4 str. 40]
 gi|261216070|ref|ZP_05930351.1| diguanylate cyclase [Brucella abortus bv. 3 str. Tulya]
 gi|261217233|ref|ZP_05931514.1| diguanylate cyclase [Brucella ceti M13/05/1]
 gi|261220453|ref|ZP_05934734.1| diguanylate cyclase [Brucella ceti B1/94]
 gi|261313317|ref|ZP_05952514.1| diguanylate cyclase [Brucella pinnipedialis M163/99/10]
 gi|261318706|ref|ZP_05957903.1| diguanylate cyclase [Brucella pinnipedialis B2/94]
 gi|261320104|ref|ZP_05959301.1| diguanylate cyclase [Brucella ceti M644/93/1]
 gi|261323140|ref|ZP_05962337.1| diguanylate cyclase [Brucella neotomae 5K33]
 gi|261753600|ref|ZP_05997309.1| diguanylate cyclase [Brucella suis bv. 3 str. 686]
 gi|261756823|ref|ZP_06000532.1| diguanylate cyclase [Brucella sp. F5/99]
 gi|265986504|ref|ZP_06099061.1| diguanylate cyclase [Brucella pinnipedialis M292/94/1]
 gi|265996196|ref|ZP_06108753.1| diguanylate cyclase [Brucella ceti M490/95/1]
 gi|23463979|gb|AAN33807.1| GGDEF domain protein [Brucella suis 1330]
 gi|225615604|gb|EEH12653.1| GGDEF domain protein [Brucella ceti str. Cudo]
 gi|255998055|gb|ACU49742.1| GGDEF domain protein [Brucella microti CCM 4915]
 gi|260154761|gb|EEW89842.1| diguanylate cyclase [Brucella suis bv. 4 str. 40]
 gi|260917677|gb|EEX84538.1| diguanylate cyclase [Brucella abortus bv. 3 str. Tulya]
 gi|260919037|gb|EEX85690.1| diguanylate cyclase [Brucella ceti B1/94]
 gi|260922322|gb|EEX88890.1| diguanylate cyclase [Brucella ceti M13/05/1]
 gi|261292794|gb|EEX96290.1| diguanylate cyclase [Brucella ceti M644/93/1]
 gi|261297929|gb|EEY01426.1| diguanylate cyclase [Brucella pinnipedialis B2/94]
 gi|261299120|gb|EEY02617.1| diguanylate cyclase [Brucella neotomae 5K33]
 gi|261302343|gb|EEY05840.1| diguanylate cyclase [Brucella pinnipedialis M163/99/10]
 gi|261736807|gb|EEY24803.1| diguanylate cyclase [Brucella sp. F5/99]
 gi|261743353|gb|EEY31279.1| diguanylate cyclase [Brucella suis bv. 3 str. 686]
 gi|262550493|gb|EEZ06654.1| diguanylate cyclase [Brucella ceti M490/95/1]
 gi|264658701|gb|EEZ28962.1| diguanylate cyclase [Brucella pinnipedialis M292/94/1]
          Length = 240

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 23/229 (10%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY- 97
           IAT+I I+       G+    G++   V  L  +++   I++ LG    S L+EL  SY 
Sbjct: 21  IATIISIS----LSTGIRFALGVKSDTVTILVRLLLPFLIAMPLGVFWFSRLEELERSYR 76

Query: 98  ------NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFGH 148
                 N +++++ +D L+GLLN  +FI    + N+     +F   D+DY KQIND +GH
Sbjct: 77  TAVKRANELARVASVDPLTGLLNRRSFIQQFNAANKAGVRGWFLIVDVDYLKQINDQYGH 136

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILAN-DLRK--IIE 204
           P GD  I  ++  L     +   + R+GG+EF A    G+     ++L++  LR   ++ 
Sbjct: 137 PAGDDAIIAVAQALEDCLSSDSLIARIGGDEFCAFVPKGAINDVDSVLSDISLRADGLLR 196

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             + N+ S     +T+S G       +    ++  AD+ LY  KKS R 
Sbjct: 197 EKRPNVGS----SLTVSVGRISCKTGQIFEEVLSIADEQLY-RKKSQRQ 240


>gi|146292899|ref|YP_001183323.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella putrefaciens CN-32]
 gi|145564589|gb|ABP75524.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella putrefaciens CN-32]
          Length = 749

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 13/164 (7%)

Query: 107 DCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N +A    + +           S +  D+D FKQ+ND +GH  GD ++  +  
Sbjct: 318 DSLTGLANRNALFRQIQTLITSDCLTPGFSFMLMDLDNFKQVNDTYGHDKGDMLLLQVVG 377

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINISSGPSIHI 218
           Q+     + +   RLGG+EFA    G   Q+A  L+    KII+N   +  +S    ++ 
Sbjct: 378 QIKTCLDSSIMFARLGGDEFALLLPGVVTQKA--LSQLAEKIIKNVYRRYELSKDKGVYS 435

Query: 219 TISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260
           ++S GIA R  ++ ++   ++  ADQA+Y++K +GRNR   F++
Sbjct: 436 SVSIGIA-RFPEDALNLEQLLNCADQAMYISKANGRNRYHFFTE 478


>gi|308185409|ref|YP_003929541.1| cellulose synthesis regulatory protein [Pantoea vagans C9-1]
 gi|308055689|gb|ADO07859.1| Cellulose synthesis regulatory protein [Pantoea vagans C9-1]
          Length = 523

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 88/184 (47%), Gaps = 18/184 (9%)

Query: 90  LKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGS--YNEKLS-----IVFFDIDYFKQ 141
           L++   + NR +   ++ D L+G+ N   F   L     N +LS     ++ FDIDYFK+
Sbjct: 334 LRDELTAANRSLENQAQSDGLTGVANRRHFDHMLTESLLNAELSGLPVSLILFDIDYFKR 393

Query: 142 INDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND +GH  GD  +  ++  L            R GGEEFA          A  LA  + 
Sbjct: 394 YNDTYGHVAGDDCLKKVATVLKHAARRKNELTARYGGEEFAIILSEQPLSTAVDLAESII 453

Query: 201 KIIENSQIN--ISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRN 253
             +    I    +  P  H+T+SAG A     +  H +    +I RAD+ALY AK++GRN
Sbjct: 454 AAVNRLAIPHMTTELPQKHVTLSAGCAMYFATDLQHGK--QGLIKRADEALYRAKRAGRN 511

Query: 254 RVVC 257
           RV+C
Sbjct: 512 RVMC 515


>gi|227112832|ref|ZP_03826488.1| putative regulator [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 515

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 14/182 (7%)

Query: 88  SILKELFISYNRISQ-LSRIDCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYF 139
           +I+++   S N   Q L+  D L+GL N   F      +L    EK   ++++ FD+D F
Sbjct: 330 TIVRDELTSVNHTLQTLALFDGLTGLANRRQFDIFLQQTLLQAAEKRQCIALIMFDVDAF 389

Query: 140 KQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           K+ ND++GH  GD+ +  + + L  ++      V R GGEEFA     + +Q AA LA  
Sbjct: 390 KKYNDHYGHVAGDECLRKIGNLLSNMLRRNEDLVARYGGEEFAIIITETDKQSAAALAQR 449

Query: 199 LRKIIENSQINISSG--PSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRN 253
              ++   +I   +       +TISAG+   C   P    S++I  AD ALY AK  G+N
Sbjct: 450 ALDLVREEKIPHETTLFSEKIVTISAGVYVFCADNPPPAASSVIDIADAALYRAKNGGKN 509

Query: 254 RV 255
           R+
Sbjct: 510 RI 511


>gi|304392630|ref|ZP_07374570.1| putative kinase/esterase protein [Ahrensia sp. R2A130]
 gi|303295260|gb|EFL89620.1| putative kinase/esterase protein [Ahrensia sp. R2A130]
          Length = 487

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 98/205 (47%), Gaps = 29/205 (14%)

Query: 73  IISITISLLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------G 123
           +I + +S  LG++S      +  L  S +    L+  D L+GL N   F  SL      G
Sbjct: 274 VILLIVSSALGFLSYRHSKTISALQRSEDENRFLALHDALTGLPNRLQFDRSLEGVISSG 333

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
               + +I+  D+D FK +ND FGH  GD V+A +++++  V G      RLGG+EF   
Sbjct: 334 GIG-RCAILCIDLDRFKAVNDTFGHQAGDAVLAEVANRITQVVGDTGMAARLGGDEF-MV 391

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISS--------GPSIHITISAGIAERCHKEPIS- 234
            L     +A+        ++E SQ  I S        G S  I  S G+A        + 
Sbjct: 392 LLHDGADDAS--------VVETSQTIIDSVSREIMFPGGSAFIGASIGVAHWPDDTSTAK 443

Query: 235 TIIYRADQALYVAKKSGRNRVVCFS 259
           +II  AD+ALY AK+SGR R VC S
Sbjct: 444 SIIRSADEALYQAKESGRGR-VCLS 467


>gi|148656956|ref|YP_001277161.1| diguanylate cyclase [Roseiflexus sp. RS-1]
 gi|148569066|gb|ABQ91211.1| diguanylate cyclase with GAF sensor [Roseiflexus sp. RS-1]
          Length = 785

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 11/171 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L G+ N   F S+     E+       LS++  D+D FKQIND +GHP+GD
Sbjct: 584 VQHLAITDPLMGIYNRRYFFSAATREYERARRHHHALSVLIADLDNFKQINDRYGHPIGD 643

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  +S        +   + R GGEE       +       +   LR  +  S I    
Sbjct: 644 QVLQAVSSIFRRELRSIDLLARYGGEEIVVLLPETDCSGVVRVVERLRSRL-MSAIPTER 702

Query: 213 GPSIHITIS--AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           G  +HIT S  A +++R     + T+I  ADQ+L  AK+ G++R+V + D+
Sbjct: 703 G-DVHITASFGAAVSQRIRTPDVETLIACADQSLLYAKQQGKDRLVIWCDM 752


>gi|71909200|ref|YP_286787.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71848821|gb|AAZ48317.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 827

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 91/178 (51%), Gaps = 13/178 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
           +R+  +++ D L+GL N  A +  L         +   ++++F D+D FK IND  GH V
Sbjct: 392 DRMRHIAQHDALTGLPNRLALLMRLAQLLPEARRHGWTVAVMFIDLDRFKIINDTLGHQV 451

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQIN 209
           GD+++  ++ +L  +     FV RLGG+EF       SS  +AAI++    KII      
Sbjct: 452 GDEMLREVACRLSNLLRETDFVARLGGDEFVIILPSISSPADAAIVSG---KIISALSTA 508

Query: 210 I-SSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDIENNT 265
           I + G  +H + S GI+      P   I+ + AD A+Y AK +GRN    F+   N T
Sbjct: 509 IEAEGHELHTSPSIGISIFPDDGPDGDIVLKNADTAMYHAKAAGRNNYQFFAADMNRT 566


>gi|329297647|ref|ZP_08254983.1| RNase II stability modulator [Plautia stali symbiont]
          Length = 269

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 92/184 (50%), Gaps = 17/184 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  ++  D ++GL N +A    +      +   +  +V+ D+D FK
Sbjct: 69  SGTDITEERRAQERLRVMANTDTVTGLPNRNAIHQQISLALELANGSQTGVVYLDLDNFK 128

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN--- 197
           ++ND +GH  GD+++  +S  ++   G    + RLGG+EF   A  +S+     +A+   
Sbjct: 129 KVNDAYGHMFGDQLLQAVSLAILSCLGKNQTLARLGGDEFVVLAEHTSQAALEAMASASR 188

Query: 198 ---DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
               LR+      I + SG SI I ++       H E   ++I  AD A+Y AK++GR +
Sbjct: 189 ILERLRQPFRIGLIEVYSGCSIGIALAP-----LHGEDRESLIRNADTAMYHAKENGRGK 243

Query: 255 VVCF 258
             CF
Sbjct: 244 -FCF 246


>gi|320324118|gb|EFW80199.1| hypothetical protein PsgB076_13667 [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 352

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 10/161 (6%)

Query: 104 SRIDCLSGLLNHSAFISSL------GSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           SR D L+GLLN  A+ ++L      G       ++   DID+FK +ND +GH  GD+VI 
Sbjct: 190 SRRDSLTGLLNQGAWRAALEEEYALGKREVGSATLALIDIDHFKAVNDVYGHLTGDQVIK 249

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
                L  V  +    GR+GG+EF     GS E +A  L   L++ +  +       P +
Sbjct: 250 LFGTVLGAVKRSTDIAGRIGGDEFGLILRGSDEVQATKLLCRLQQQLARTFTTEPELPVV 309

Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            ++I  G+A        +   +   D+ALY AK+ GRN++V
Sbjct: 310 SLSI--GVATFGLEYGGVEGWLRSCDRALYEAKRQGRNQIV 348


>gi|152984841|ref|YP_001345776.1| hypothetical protein PSPA7_0381 [Pseudomonas aeruginosa PA7]
 gi|150959999|gb|ABR82024.1| hypothetical protein PSPA7_0381 [Pseudomonas aeruginosa PA7]
          Length = 323

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 11/166 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+   N   F  S   ++ E       L+ +  D+D FK+IND FGH VGD
Sbjct: 158 LQRLATTDVLTQSSNRRYFFDSAEAAFKECRREGIPLAFLLLDVDDFKKINDRFGHQVGD 217

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  ++             GR+GGEEFA    G  EQ A  +   L++ ++  ++    
Sbjct: 218 QVLQRIAQSGSAALRRGDLFGRIGGEEFAVLLPGCDEQTARQIGERLQREVQ--RLRFQE 275

Query: 213 GP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  S  IT+S G+   +   E +  +  RAD A+Y AK+ G++ +V
Sbjct: 276 GEHSFGITVSQGLTVLQADDEGLGALYSRADAAMYSAKRQGKDCIV 321


>gi|78062390|ref|YP_372298.1| diguanylate cyclase [Burkholderia sp. 383]
 gi|77970275|gb|ABB11654.1| diguanylate cyclase (GGDEF domain) [Burkholderia sp. 383]
          Length = 516

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 11/163 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           I  L+R D L+GL N     + L         + +  L++++ D+D FK IND FGH  G
Sbjct: 338 IRHLARHDALTGLPNRHELHAQLKRMLARRPRAPDAALAVMYLDLDGFKAINDRFGHQAG 397

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++ +L           R+GG+EF  A   ++    ++LA  + + I ++   +S
Sbjct: 398 DDVLTQVAVRLGKTLSPGELAARIGGDEFVVAIDDTTMHACSLLAARIIRQI-SAPYTLS 456

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
            G ++++ IS GIA +  H  P   +I +AD ALY AK +G+ 
Sbjct: 457 IGETVNLGISIGIALDDGHGSP-DELIRQADSALYDAKSAGKG 498


>gi|228906375|ref|ZP_04070259.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200]
 gi|228853287|gb|EEM98060.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200]
          Length = 569

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 88/172 (51%), Gaps = 6/172 (3%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHP 149
           L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  GH 
Sbjct: 137 LRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLGHM 196

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD +++ ++ +L  V G    + RLGG+EF        + + + LA  +    +     
Sbjct: 197 IGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQAP--F 254

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           I  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 255 ILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306


>gi|239813726|ref|YP_002942636.1| diguanylate cyclase with PAS/PAC sensor [Variovorax paradoxus S110]
 gi|239800303|gb|ACS17370.1| diguanylate cyclase with PAS/PAC sensor [Variovorax paradoxus S110]
          Length = 801

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 12/180 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136
           YI  + + EL     ++  L+R D L+GL N  +F       ++        + ++F DI
Sbjct: 601 YILSNDVTELKQKQMKLDALAREDALTGLPNRRSFEEHARDAMARSRRAGLPVCLLFLDI 660

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAIL 195
           DYFK IND+ GH  GD V+     +L           R  G+EF     G+S   EA ++
Sbjct: 661 DYFKTINDSLGHAAGDAVLREFGRRLRESVRETDMAARYAGDEFVILLEGASGAAEAQVV 720

Query: 196 ANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A    K++   +      G ++  T S G+A     E  +++  RAD ALY AKK G+NR
Sbjct: 721 AG---KVLAAMRPAFHLPGRTLQATTSIGVAVSEDDEDFASLFVRADTALYAAKKEGKNR 777


>gi|221067494|ref|ZP_03543599.1| diguanylate cyclase [Comamonas testosteroni KF-1]
 gi|220712517|gb|EED67885.1| diguanylate cyclase [Comamonas testosteroni KF-1]
          Length = 632

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 88/170 (51%), Gaps = 7/170 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           + L+  D L+GL N  A   +L       + +++ F D+D FKQ+ND  GH  GD+V+  
Sbjct: 463 NHLANHDALTGLANRRALEETLNQELADGQMVAVCFMDLDGFKQVNDTQGHDAGDEVLRV 522

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQINISSGPS 215
           ++ +L+       +V RLGG+EF     G    + A+  + +++ +E     I +  G  
Sbjct: 523 VAARLLAQARAGDYVARLGGDEFVVLLSGLHMPKEAM--SVMKRCMEAVRQPIALQGGVM 580

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           + +  S GI+        + ++  AD+A+Y AK +G+ R+V  SD+  ++
Sbjct: 581 VQVGSSIGISISMEGSSTANLLQTADEAMYAAKHAGKGRIVQHSDLAQSS 630


>gi|188577258|ref|YP_001914187.1| Putative signal protein with CHASE3 and GGDEF domains [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188521710|gb|ACD59655.1| Putative signal protein with CHASE3 and GGDEF domains [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 563

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      SL             LS++  D+D+FKQ ND+ GH  GD ++A + 
Sbjct: 396 DALTGLYNRRYLEESLSHELARCARRGLPLSVLMLDVDHFKQFNDSQGHAGGDLLLAAVG 455

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L+    T     R GGEEF      +  +EA  +A  +R  I    ++  +     +T
Sbjct: 456 ELLLTRLRTEDVACRYGGEEFTVLLPEADGEEALRVAEQIRGYIAALAVSDEARALPKVT 515

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+A      E  +++I +AD ALY AK  GRNRV
Sbjct: 516 ASIGVASFPADGEQGASLIQKADAALYRAKHRGRNRV 552


>gi|56752006|ref|YP_172707.1| hypothetical protein syc1997_c [Synechococcus elongatus PCC 6301]
 gi|56686965|dbj|BAD80187.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 664

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 82/182 (45%), Gaps = 14/182 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           +L  +  ++ +L++ D L+GL N   F   L             L ++  DID FKQ ND
Sbjct: 479 QLAAANQQLLRLAQSDGLTGLANRRHFDQCLDIEWQRAIREQHPLGLILIDIDCFKQFND 538

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  L  V   P   V R GGEEF      ++EQ    +A  +R  +
Sbjct: 539 TYGHQAGDDCLKAVATALTQVIARPADLVARYGGEEFVVILPNTNEQGILQIAESMRSAV 598

Query: 204 ENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  +I   S         +  A       HK P   +I  ADQALY AK+ GRNR VC  
Sbjct: 599 QQLKIPHRSSSVCSSVSLSLGAVTWVPTPHKSP-EALIGAADQALYQAKELGRNR-VCLG 656

Query: 260 DI 261
            +
Sbjct: 657 GV 658


>gi|17546612|ref|NP_520014.1| hypothetical protein RSc1893 [Ralstonia solanacearum GMI1000]
 gi|17428911|emb|CAD15595.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum GMI1000]
          Length = 533

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 18/189 (9%)

Query: 84  YISGSILKELFISYNRIS--QLSRI------DCLSGLLNHSAFISSL---GSYNEKLSIV 132
           YI    LK   +   R++  +++R+      D L+GL N     ++L      ++  S V
Sbjct: 328 YIEAHRLKRALLRGTRLTSTRMARLNLEALTDPLTGLYNRRGVANALRLHAGRHQPFSAV 387

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK+IND  GH VGD+V+  L+  +          GR+GGEEF      ++   A
Sbjct: 388 TLDVDHFKRINDRHGHDVGDQVLRHLAALIREQARHGDITGRIGGEEFILLLPDATPDGA 447

Query: 193 AILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250
              A  LR  +E         P+   +T+S G+A        +  ++  +D ALY AK+ 
Sbjct: 448 FRTAERLRLAVE-----ARPNPAGQVVTVSLGVAHYPQSAGEVDAVLKLSDLALYQAKRD 502

Query: 251 GRNRVVCFS 259
           GRNR V + 
Sbjct: 503 GRNRTVVYQ 511


>gi|320334267|ref|YP_004170978.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
 gi|319755556|gb|ADV67313.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
          Length = 802

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 96/177 (54%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  S  R++  ++ D L+GL N + F       I+S      +L+++F D+D FK +ND
Sbjct: 371 ELEASQARLAHQAQHDVLTGLPNRALFQDRVERGIASAAREGGRLAVMFIDLDGFKAVND 430

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
             GH  GD+++  ++ +L         V RLGG+EF    LG ++ Q+AA +A  + + +
Sbjct: 431 TLGHAAGDELLREVASRLQDNVRRNDTVARLGGDEFTVMLLGVNTAQDAASVAQKILRAL 490

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259
               I+++ G + H++ S G++        +T + R AD A+Y AK+ G+N +  ++
Sbjct: 491 REP-IHLADGAA-HVSGSIGVSLYPQDGADATDLQRHADIAMYRAKQGGKNNITFYA 545


>gi|296388151|ref|ZP_06877626.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
          Length = 201

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 22/178 (12%)

Query: 100 ISQLSRI----DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
           IS+L R+    D L+GL N  +F   L           + L+++  D+D+FK  ND +GH
Sbjct: 26  ISRLLRVMADHDSLTGLHNRRSFNQHLDRLWRQAQREQKTLALLLCDVDHFKAYNDRYGH 85

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
             GD V+  +          P+ +  RLGGEEFA    G++E EA + A  LR  ++  +
Sbjct: 86  QAGDAVLQRIGAVFEANARRPLDMAVRLGGEEFALLLYGANEHEARLRAEALRAQVQALR 145

Query: 208 I-NISSGPSIHITISAGIAERCHKEPISTIIYR-------ADQALYVAKKSGRNRVVC 257
           + + +S  +  +T+S G++  C        + R       AD+ALY AK  GRN+VV 
Sbjct: 146 MEHEASDTAREVTLSVGVS--CLWPTPGNDLKRLYDLYEHADRALYEAKAFGRNQVVA 201


>gi|307152731|ref|YP_003888115.1| diguanylate cyclase [Cyanothece sp. PCC 7822]
 gi|306982959|gb|ADN14840.1| diguanylate cyclase [Cyanothece sp. PCC 7822]
          Length = 447

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 92/174 (52%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKL--SIVFFDIDYFKQIN 143
           ++L  +  ++ +L+  D L+ L N   F   L      S  EK+  S++  D+D+FK  N
Sbjct: 269 RDLEKAKQKLEKLATTDQLTQLANRRKFDQYLQYEWRRSIREKIPISLILCDVDHFKLYN 328

Query: 144 DNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GDK +  ++  +  +V  +   V R GGEEFA     ++ + A  +A D+R  
Sbjct: 329 DCYGHLAGDKCLKRVAKVMETIVKRSADLVARYGGEEFAIVLSNTNLEGAQKVAEDIRLA 388

Query: 203 IENSQI-NISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRN 253
           +   +I +  SG + ++T+S GI+      +    T+I  AD+ALY AK+ GRN
Sbjct: 389 VAKRKIPHGVSGANPYVTVSLGISTTIPSLESSSKTLINTADKALYQAKERGRN 442


>gi|254253798|ref|ZP_04947115.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124898443|gb|EAY70286.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 363

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNE-KLSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+GL N       L      GS    +L+++  D+D FKQ N
Sbjct: 170 QQLLEANLELRRLTHSDGLTGLSNRRYLDEYLAAEWRRGSRERGELALLMIDVDNFKQYN 229

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD ++  ++  L    G +     R GGEEFA     SS   A +LA  +R  
Sbjct: 230 DTYGHVAGDGLLRQIAATLERCVGRSGALAARFGGEEFAVVMPASSASAARLLAEKIRLA 289

Query: 203 IENSQI-NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E  ++ +  + P  ++T+S G A        P + +I  AD+ALY AK  G+NRV
Sbjct: 290 VEALRLEHAHASPGRYVTVSIGGASIVPTPDVPPTALIEAADRALYRAKHEGKNRV 345


>gi|323137100|ref|ZP_08072180.1| diguanylate cyclase [Methylocystis sp. ATCC 49242]
 gi|322397861|gb|EFY00383.1| diguanylate cyclase [Methylocystis sp. ATCC 49242]
          Length = 343

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 87/187 (46%), Gaps = 24/187 (12%)

Query: 89  ILKELFISYNRISQLSRIDC--LSGLLNHSAF---ISSLGSYNEKLS------------- 130
           I+  L I  N +  L   DC  L+GL N   F    S + SY++ +              
Sbjct: 136 IVGMLRIYSNHLGVLDYGDCDELTGLFNRRTFHDYFSQIASYSDAVPPRVDERVPTRERF 195

Query: 131 --IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
             +   DID+FK+IND+FGHP GD+V+   +  +   F     + R GGEEF      ++
Sbjct: 196 PHLAVIDIDFFKRINDDFGHPFGDEVLVLFARLMRECFNDLDRLFRFGGEEFLVILNNAT 255

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           + EA     + R  +E  +     GP   +T S G       +  S+   RAD ALYVAK
Sbjct: 256 KLEAQAALENFRATVEGFRFP-QVGP---VTASIGYTTVLPGDTGSSAFGRADAALYVAK 311

Query: 249 KSGRNRV 255
           + GRN+V
Sbjct: 312 QRGRNQV 318


>gi|200391114|ref|ZP_03217725.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|199603559|gb|EDZ02105.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 663

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRTQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFS 259
            FS
Sbjct: 394 VFS 396


>gi|110803561|ref|YP_698113.1| sensory box protein/histidinol phosphate phosphatase family protein
           [Clostridium perfringens SM101]
 gi|110684062|gb|ABG87432.1| sensory box protein/histidinol phosphate phosphatase family protein
           [Clostridium perfringens SM101]
          Length = 624

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 20/170 (11%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           KE+ I  +R++     D L+ + N   F  S G+         +K +++F D+D+FK+IN
Sbjct: 182 KEMEIELDRMANY---DELTNIPNMRLFFKSFGNTINESKKKGKKFAVLFIDLDWFKEIN 238

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILAND 198
           DNFGH VGD+V+     ++         +GR+GG+EFAA     S++E        + N 
Sbjct: 239 DNFGHDVGDEVLVCAVKRIYKCLRKGDILGRIGGDEFAAILKDISDKEEIEKIVKDIQNY 298

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           LRK I+   +  +   SI ITI     E+     I  ++  +D+A+Y  K
Sbjct: 299 LRKRIKIGDVTCNIDSSIGITIFPEDGEK-----IEVLMRNSDKAMYKVK 343


>gi|82702732|ref|YP_412298.1| diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis
           ATCC 25196]
 gi|82410797|gb|ABB74906.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosospira multiformis ATCC 25196]
          Length = 688

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 107/211 (50%), Gaps = 33/211 (15%)

Query: 74  ISITISLL---LGYISGSI-----LKELFISYNRISQLSRIDCLSGLLNHSAF------- 118
           +S+TIS +    G+I G+      + +   S  RI  L+  D L+GL N + F       
Sbjct: 222 VSVTISPVKDNAGHIVGAYKIAHDITQRKESLKRIEYLAHYDLLTGLPNRALFTDRMRIA 281

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           I +   Y  +L+++F D+D FK IND+ GH +GDK++  +++++         V RLGG+
Sbjct: 282 IENASRYAFRLALLFVDLDRFKLINDSLGHAIGDKLLRAVAERMQSTVRQADTVSRLGGD 341

Query: 179 EF---------AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
           EF         A  A   +E+  A+L+   +  IE  ++ +++   I I   +G      
Sbjct: 342 EFVVLLGRIHTATEAARVAEKLIAVLSQPYQ--IEQHELLLTASVGISIYPDSG------ 393

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            + +++++  AD ++Y AK  GRNR   +S+
Sbjct: 394 -KDVNSLMRNADVSMYSAKGQGRNRYQFYSE 423


>gi|27381607|ref|NP_773136.1| hypothetical protein bll6496 [Bradyrhizobium japonicum USDA 110]
 gi|27354775|dbj|BAC51761.1| bll6496 [Bradyrhizobium japonicum USDA 110]
          Length = 1137

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 8/163 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI+ L++ D L+GL N + F   L         +    S++  D+D FK +ND  GH  G
Sbjct: 704 RIAYLAQHDLLTGLANRAVFSEKLDDAAKRSQRHGTTFSVLMLDLDRFKAVNDTLGHAAG 763

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  ++ +L         + RLGG+EFA        Q    +A  LR I    Q    
Sbjct: 764 DQLLVEVARRLSSSLRDTDVLARLGGDEFAIIQENEKNQSEGAIALALRIIGLIEQPVDL 823

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
            G  + +  S GIA    H     T++ +AD ALY  K +GRN
Sbjct: 824 DGHRVSVGTSVGIAFAPEHGADAETLLQKADVALYATKSAGRN 866


>gi|94314669|ref|YP_587878.1| hypothetical protein Rmet_5750 [Cupriavidus metallidurans CH34]
 gi|93358521|gb|ABF12609.1| hypothetical protein; GGDEF and EAL domains [Cupriavidus
           metallidurans CH34]
          Length = 581

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 106/206 (51%), Gaps = 22/206 (10%)

Query: 72  VIISITISLLLGYISGSILKELFISYNR-------ISQLSRIDCLSGLLNHSAF------ 118
           ++++    +L G+++G + +E   +  +       IS +++ D L+GL N S        
Sbjct: 106 LLLATAAVMLAGWLAGRLRRERQEARKQATLADAYISHMAKHDALTGLPNRSELHERCEV 165

Query: 119 -ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
            ++        ++++  D+D+FK IN+  GHPVGD ++  ++D++         V R+GG
Sbjct: 166 LLAEARRRGSGVALLLLDLDHFKHINETLGHPVGDDLLRTIADRIRGAVRPRDVVARMGG 225

Query: 178 EEFAAAALGSS--EQEAAILAND-LRKIIENSQINISSGPSIHITISAGIAE-RCHKEPI 233
           +EF A ALG    + EA ++A   L ++ E+  +   +G  + +T S G+A        +
Sbjct: 226 DEF-AVALGDLRFDGEAELVAAKILARVSEDLPL---AGEHVRVTPSLGMAIFPQDGNSL 281

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
           + ++  AD A+Y AK  GR ++  F+
Sbjct: 282 TDLMKSADAAMYAAKHGGRAQLRRFA 307


>gi|23014126|ref|ZP_00053960.1| COG5001: Predicted signal transduction protein containing a
           membrane domain, an EAL and a GGDEF domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 679

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 85/182 (46%), Gaps = 19/182 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +R+  LS  D L+ L N   F       I     +     +   D+D FK IND FGHP+
Sbjct: 260 HRLEDLSIRDPLTRLYNRRKFDEFLDHEIDRSQRHGHPFCVAQIDLDDFKNINDTFGHPI 319

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  L+  L         + R+G +EF+     ++ +E    A  +R+ I + Q+ +
Sbjct: 320 GDLVLKELASVLNREVRRTDMLARVGADEFSVLLPETTMEEGIAAAEKMRQAIADCQLGL 379

Query: 211 SSGPSIHITISAGI------AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             G  + IT S G+      A+   K  I+     AD A+Y AK+SG+N+V    + E+ 
Sbjct: 380 PVG-GVRITASVGLVGYPENADDAQKLAIA-----ADVAIYKAKRSGKNQVAVIGEGEDA 433

Query: 265 TC 266
           T 
Sbjct: 434 TV 435


>gi|331696700|ref|YP_004332939.1| diguanylate cyclase [Pseudonocardia dioxanivorans CB1190]
 gi|326951389|gb|AEA25086.1| diguanylate cyclase [Pseudonocardia dioxanivorans CB1190]
          Length = 435

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 19/176 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ + +  D  +GLLN +A+       +S         S++  D+D+FK +ND  GH  
Sbjct: 232 RQLEEAASTDGKTGLLNAAAWHAHAQREVSRAVRQGGAASLLILDLDHFKSVNDRHGHLA 291

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-----EAAILANDLRKIIEN 205
           GDKV++ +++ L         VGR GGEEF     G  +      E  ++A+ +R+ +E 
Sbjct: 292 GDKVLSAVAETLRSEVRENDLVGRFGGEEFVVLLPGVDDSDYGVAELRLVADRIRRRVEG 351

Query: 206 SQINISSGPSIHITIS------AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             + + + P   +TI+       G A       ++ ++  AD ALY AK+SGRN V
Sbjct: 352 MAVEMPT-PDGPLTITGLTVSIGGAAFPTDGSDLTRLLETADSALYAAKRSGRNVV 406


>gi|289627159|ref|ZP_06460113.1| GGDEF [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|330868210|gb|EGH02919.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 328

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 120/232 (51%), Gaps = 21/232 (9%)

Query: 31  FSIFFSIFIATVIFIANIFL--FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG- 87
            S+FF  FI  V   A I+L  +   LT   G+++     LS V + I+ +LL G ++  
Sbjct: 108 MSVFFVKFIDYVAAAALIWLIMWQTDLTAV-GVDH---APLSYVFL-ISSTLLGGSLNAT 162

Query: 88  --SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVF--FDIDYFK 140
             S++ +   + +R  +LS+ D L+   N  A ++SL    + ++K S+ F   D+D FK
Sbjct: 163 FLSLVMQTMAASDRYQKLSKTDTLTNAPNRRALVASLDNALTSDDKSSLWFAMLDLDNFK 222

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IN N GH VGD V+   +  +    G   F GRLGGEEF       S   AA     + 
Sbjct: 223 SINANHGHDVGDNVLICFATLIKNTTGLVNF-GRLGGEEFGVML---SAANAADAIAAMD 278

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            ++ ++Q + ++   +  + SAGIA     + ++ ++  AD+ LY+AK+SGR
Sbjct: 279 HLLMHAQKDQTA--KMPYSFSAGIASLARAKNVNDLLKEADENLYLAKRSGR 328


>gi|296136609|ref|YP_003643851.1| response regulator receiver modulated diguanylate cyclase
           [Thiomonas intermedia K12]
 gi|295796731|gb|ADG31521.1| response regulator receiver modulated diguanylate cyclase
           [Thiomonas intermedia K12]
          Length = 630

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 22/177 (12%)

Query: 102 QLSRIDCLSGLLNH---SAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q +  D L+G+ N     AF+  L     +  + L+ + FD+D FK+IND  GH VGD+ 
Sbjct: 461 QAAGTDELTGVGNRRALDAFLPPLFAQAAAEGQPLACLMFDLDEFKRINDRLGHDVGDQA 520

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +   L        FV R+GGEEF      ++E+ A  +A  +R  I   Q ++   P
Sbjct: 521 LRAVGRVLRQQSRGMDFVARVGGEEFLMLCPQTTEEAAMRVAERIRAAIAVPQADL---P 577

Query: 215 SIHITI-----SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            + +++     +AG A+       +++I  ADQAL  AK+ GRNR VC +   ++  
Sbjct: 578 PLSVSVGVALGAAGFAD------AASLIRAADQALLQAKRLGRNR-VCLAPTASSAA 627


>gi|229188834|ref|ZP_04315868.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876]
 gi|228594647|gb|EEK52432.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876]
          Length = 569

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF        + +   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMRQLATSVLSCFQAP- 253

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             I  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 254 -FILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306


>gi|226952586|ref|ZP_03823050.1| GGDEF domain-containing protein [Acinetobacter sp. ATCC 27244]
 gi|226836666|gb|EEH69049.1| GGDEF domain-containing protein [Acinetobacter sp. ATCC 27244]
          Length = 425

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 87/175 (49%), Gaps = 10/175 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           K L +  + +  LS+ D L+ + N   F      Y        + L+++F DIDYFK  N
Sbjct: 237 KILRLQASELLHLSQHDDLTNVSNRRTFEEMCIYYYDLACQEQKPLAVLFIDIDYFKNYN 296

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH +GD  I+ ++  +        F+ R GGEEF      +  Q A  +A ++ + I
Sbjct: 297 DFYGHQMGDHAISEIAKTIKGSIRHMDFIARYGGEEFVVLLPETPAQGAYAVATNIYRAI 356

Query: 204 ENSQI-NISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255
           +   I +  S  S H+TIS GI        IS   +I  AD+ALY AK+ GRN++
Sbjct: 357 DRLMIPHAKSLVSNHVTISLGITVFNGNRAISQELLIDTADKALYRAKQLGRNQI 411


>gi|187732577|ref|YP_001880181.1| sensory box-containing diguanylate cyclase [Shigella boydii CDC
           3083-94]
 gi|187429569|gb|ACD08843.1| sensory box-containing diguanylate cyclase [Shigella boydii CDC
           3083-94]
          Length = 430

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D + FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTNRFKHINDLYGHSKGDEVLCALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLIPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|170755524|ref|YP_001780837.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum B1 str. Okra]
 gi|169120736|gb|ACA44572.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum B1 str. Okra]
          Length = 419

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 15/180 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           E  I  ++  Q++  D L+ L N ++F+  L             L+I+F D+D FK++ND
Sbjct: 244 ERKIYNDKTKQMAYFDSLTELPNRNSFLKQLEHEIKLSRKKQNLLAIMFLDLDKFKEVND 303

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
           NFGH  GDK++  ++ ++     +   + R GG+EF       + E++   LA D+ ++ 
Sbjct: 304 NFGHCTGDKLLWQVAKRVKNTISSKDLIARFGGDEFTILIRNIAHEKQVEDLARDIIEVF 363

Query: 204 ENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +   I I  G  ++I  S GI+   +  H      +I +AD+A+Y AKK G N+   + D
Sbjct: 364 KEP-ICI-EGIYVNIKTSIGISFFPKDGH--TSQELIKKADKAMYDAKKRGSNKFQIYKD 419


>gi|146338937|ref|YP_001203985.1| putative signal peptide [Bradyrhizobium sp. ORS278]
 gi|146191743|emb|CAL75748.1| conserved hypothetical protein; putative signal peptide
           [Bradyrhizobium sp. ORS278]
          Length = 636

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 88/181 (48%), Gaps = 22/181 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPV 150
            R+  L+  D L+GL N   F   L      +Y EK  L+++  DID+FK  ND +GHP 
Sbjct: 447 GRLETLAIEDGLTGLANRRRFDERLLEEWGRAYREKTSLALLMIDIDHFKAFNDAYGHPA 506

Query: 151 GDK----VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GD+    V   L+D+      +   V R GGEEFA     +     A L   +R+ +  +
Sbjct: 507 GDECLHTVAGILADE---AQRSSDLVARYGGEEFAILLPNTDAAGCARLGERIRRALHAA 563

Query: 207 QINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +  +  P   +T S G A      ER      +++I  AD+ALYVAK  GR+R+V   +
Sbjct: 564 ALVHAHNPPGIVTASLGGAVCRPGLERSAGP--ASLIEAADRALYVAKDGGRDRMVMAGE 621

Query: 261 I 261
           +
Sbjct: 622 V 622


>gi|15598539|ref|NP_252033.1| hypothetical protein PA3343 [Pseudomonas aeruginosa PAO1]
 gi|116051358|ref|YP_789809.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218890461|ref|YP_002439325.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254236305|ref|ZP_04929628.1| hypothetical protein PACG_02276 [Pseudomonas aeruginosa C3719]
 gi|9949475|gb|AAG06731.1|AE004756_9 hypothetical protein PA3343 [Pseudomonas aeruginosa PAO1]
 gi|115586579|gb|ABJ12594.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126168236|gb|EAZ53747.1| hypothetical protein PACG_02276 [Pseudomonas aeruginosa C3719]
 gi|218770684|emb|CAW26449.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
          Length = 389

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 22/178 (12%)

Query: 100 ISQLSRI----DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
           IS+L R+    D L+GL N  +F   L           + L+++  D+D+FK  ND +GH
Sbjct: 214 ISRLLRVMADHDSLTGLHNRRSFNQHLDRLWRQAQREQKTLALLLCDVDHFKAYNDRYGH 273

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
             GD V+  +          P+ +  RLGGEEFA    G++E EA + A  LR  ++  +
Sbjct: 274 QAGDAVLQRIGAVFEANARRPLDMAVRLGGEEFALLLYGANEHEARLRAEALRAQVQALR 333

Query: 208 I-NISSGPSIHITISAGIAERCHKEPISTIIYR-------ADQALYVAKKSGRNRVVC 257
           + + +S  +  +T+S G++  C        + R       AD+ALY AK  GRN+VV 
Sbjct: 334 MEHEASDTAREVTLSVGVS--CLWPTPGNDLKRLYDLYEHADRALYEAKAFGRNQVVA 389


>gi|330953892|gb|EGH54152.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 341

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 84/178 (47%), Gaps = 18/178 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQIND 144
           EL I+ N +  ++  D L+ L N   F ++L     + S       I+  DID+FKQ ND
Sbjct: 146 ELNIARNELEIIAHTDSLTQLANRRCFDAALQQEGGRASRNTATIAIILLDIDWFKQYND 205

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDL 199
            +GH  GD  +     Q+  + G  +        R GG EF      +    A  +A  +
Sbjct: 206 TYGHLQGDDCL----KQVAGLIGNSLDRAGDIAARYGGGEFVILLPETDLAGALKIAEKI 261

Query: 200 RKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           R  +E ++I  S+ P   +TIS+G+       K+  +  +  AD+ LY+AK  GRNRV
Sbjct: 262 RSSVETTRIEHSASPLGKLTISSGVVSINAAEKDGHTAALAEADRLLYLAKTKGRNRV 319


>gi|229593072|ref|YP_002875191.1| putative GGDEF/EAL domain regulatory protein [Pseudomonas
           fluorescens SBW25]
 gi|229364938|emb|CAY53042.1| putative GGDEF/EAL domain regulatory protein [Pseudomonas
           fluorescens SBW25]
          Length = 701

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 14/158 (8%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN   F  ++ +         + L +++ D+D FK++ND+ GH  GD+V+ ++S
Sbjct: 278 DPLTGLLNRRGFYQAVENTLLRSERVEQSLVLLYLDLDGFKRVNDSLGHDAGDRVLRWVS 337

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHI 218
           +QL     +   +GR+GG+EF A       ++AA +A    K+IE   I     G  + +
Sbjct: 338 EQLQGCLRSYDILGRMGGDEFTALLELEFPEQAAKIAE---KLIERVSICQQVEGLDVML 394

Query: 219 TISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            +S GIA    C  + ++ ++  AD A+Y AK++GR +
Sbjct: 395 GVSIGIATFPDCGSD-LNGLLRAADIAMYEAKRAGRQQ 431


>gi|188495985|ref|ZP_03003255.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 53638]
 gi|188491184|gb|EDU66287.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 53638]
          Length = 476

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 13/160 (8%)

Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ + N + F     + S  +      ++  DID FK++ND +GHPVGD+VI  + + 
Sbjct: 309 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDNFKKVNDTWGHPVGDQVIKTVVNI 368

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216
           +         + R+GGEEF         + A  LA  +R+ +E     N +  I     +
Sbjct: 369 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQ--KV 426

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            I+I A + +     P + I   AD ALY AK++GRN+VV
Sbjct: 427 TISIGAVVTQENALNP-NEISRLADNALYEAKETGRNKVV 465


>gi|167586955|ref|ZP_02379343.1| diguanylate cyclase [Burkholderia ubonensis Bu]
          Length = 482

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 23/193 (11%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           S L+EL  +  ++  L+  D L+G  N   FI  +    ++        S++ FD+D FK
Sbjct: 289 SALQELRRTNQKLEYLAATDPLTGASNRRQFIGLVEREIQRAERDGTPFSLLAFDLDNFK 348

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-----SSEQEAAIL 195
            IND +GH +GD+V+  +  Q +          R GG+EF     G       E+  A+L
Sbjct: 349 NINDAYGHQIGDEVLRGVVRQCIEAVRPGSGTARGGGDEFVVRPAGGIARVGGEEFMALL 408

Query: 196 A----NDLRKIIENSQINISSGP------SIHITISAGIAE-RCHKEPISTIIYRADQAL 244
                   R   E  + +I+S P       + +T+S G+A+       +  ++   D+ L
Sbjct: 409 PEMPLEGARMTAERLRSSIASAPFGLDFKRVQVTVSVGVAQYGIDGSTVDALLRAVDERL 468

Query: 245 YVAKKSGRNRVVC 257
           Y AK+ GRNRVV 
Sbjct: 469 YQAKREGRNRVVA 481


>gi|149187425|ref|ZP_01865723.1| hypothetical protein VSAK1_17917 [Vibrio shilonii AK1]
 gi|148838961|gb|EDL55900.1| hypothetical protein VSAK1_17917 [Vibrio shilonii AK1]
          Length = 698

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 91/170 (53%), Gaps = 10/170 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ +++  D L+ L N S   S L         ++E+ + +F D+D+FK IND+ GH  G
Sbjct: 269 KLRKMAFFDPLTNLPNRSHLTSILEQSIEGGQRHSEQFATLFLDLDHFKHINDSKGHLYG 328

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN-DLRKIIENSQINI 210
           D++++ ++D+L  V      +GR+GG+EF    L   + EA +L   D    + N    +
Sbjct: 329 DRLLSQVADRLTDVLHHRASIGRIGGDEF-VIILTDYDSEAQLLDTIDETLGVFNRPFEL 387

Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            S  S+ ++ S G+A      +   T++  AD A+Y+AKK+GRN    +S
Sbjct: 388 DSQESLRVSGSIGVALYPQDGQNSETLLKNADTAMYLAKKNGRNGYAFYS 437


>gi|149188653|ref|ZP_01866945.1| GGDEF family protein [Vibrio shilonii AK1]
 gi|148837563|gb|EDL54508.1| GGDEF family protein [Vibrio shilonii AK1]
          Length = 373

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 82/176 (46%), Gaps = 11/176 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           KEL    +++ QL+  D LSGL N   F+             N  LS +  D+D FK +N
Sbjct: 195 KELKALNDKLQQLAVTDELSGLFNRRYFMMMTQEALLRAKVENSYLSFISLDLDNFKHLN 254

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D  GH  GD+ I   S  L   F     F+ R+GG+EF      +  Q+   +A  +R  
Sbjct: 255 DTLGHARGDEAIIHFSHVLASKFCRKNDFIFRMGGDEFLVVVCCAEHQQVIEIAEQVRSA 314

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRVV 256
           IE  Q  I +     IT S G+     +E    + +  RADQ LY AK+ GRN V+
Sbjct: 315 IE-QQCLIDTSSINAITTSIGVFTHIPEEHEDFMYFMERADQLLYKAKEQGRNCVL 369


>gi|254254253|ref|ZP_04947570.1| hypothetical protein BDAG_03548 [Burkholderia dolosa AUO158]
 gi|124898898|gb|EAY70741.1| hypothetical protein BDAG_03548 [Burkholderia dolosa AUO158]
          Length = 596

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 10/183 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
           G+ L+    + + +  L+R D L+GL N  +F   L              S++F D+D F
Sbjct: 411 GAQLRRRIRAESELVLLARTDGLTGLNNRRSFGEVLDREWRRARRARSVFSLLFVDVDRF 470

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILAND 198
           K  ND +GH  GD  +A ++  +      P+    R GGEEF      + + +AA +A  
Sbjct: 471 KAYNDTYGHQAGDDALAAVARCIGDNIRQPVDTAARYGGEEFVVLLPDTPQTDAARIAER 530

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256
           +R  I+   +  +      +T S G+A    ++      +I  AD+ALY AK +GRN+V 
Sbjct: 531 IRAAIDELALEHAGSEYGRVTASIGLASWTPEQEGEAGAVIKAADEALYYAKATGRNKVA 590

Query: 257 CFS 259
            F 
Sbjct: 591 AFQ 593


>gi|120603612|ref|YP_968012.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris
           DP4]
 gi|120563841|gb|ABM29585.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris
           DP4]
          Length = 310

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 9/156 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G       I SL S  ++L       +I+F D+D FK IND  GH  GDK++  ++
Sbjct: 150 DELTGTWTKKRLIKSLTSRIDQLRIFGWNFAILFIDVDKFKSINDTHGHVTGDKILVMIA 209

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHI 218
             L+        + R GGEEF        +QE    ++  LRK++E+  +  ++G  ++ 
Sbjct: 210 KTLMSNLRAGDEIYRYGGEEFVIVLPDIKDQEHLFQISEKLRKLVESCFLE-TNGTLLNA 268

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           TIS G       +   ++I +AD+ +Y AKKSGRN+
Sbjct: 269 TISLGGIIATGNDSAESLISKADKLMYAAKKSGRNK 304


>gi|70732971|ref|YP_262744.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5]
 gi|68347270|gb|AAY94876.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5]
          Length = 430

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 114/254 (44%), Gaps = 33/254 (12%)

Query: 31  FSIFFSIFIATVI--FIANIFLFYIGLTPFYGLEYILVENLSL-VIISITISLLLGYISG 87
           + +FF+ F+   I  + +   L    L    GL ++L +   L   ++I  S ++  I+ 
Sbjct: 173 YPVFFAAFLLLAIQYWRSPRPLHAAQLVGLLGLFWMLPKTFILPFTLNIMCSQVMLMIAA 232

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           ++  E +       Q++  D L+GL    A    +        +   D+D+FK+ ND  G
Sbjct: 233 AVAHEAY-------QMAFRDELTGLPGRRALNERMQRLGRNYVLAMTDVDHFKKFNDTHG 285

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD+V+  ++ +L  V        R GGEEFA    G +  E       +R+II    
Sbjct: 286 HDVGDQVLRLVASKLSKV-TGGGRAYRYGGEEFAVVFAGKTMDECMPHLEMIREIIATYN 344

Query: 208 IN-------------------ISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYV 246
           I                    +++  S+ +TIS G+AER   H+ P   ++  ADQALY 
Sbjct: 345 IQLRNQDNRPQDDQQGRQRRGVAAASSVSVTISIGVAERLAEHRTP-EEVLKAADQALYS 403

Query: 247 AKKSGRNRVVCFSD 260
           AK +GRN V+ F  
Sbjct: 404 AKGAGRNCVIAFGQ 417


>gi|120599030|ref|YP_963604.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sp. W3-18-1]
 gi|120559123|gb|ABM25050.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. W3-18-1]
          Length = 749

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 13/164 (7%)

Query: 107 DCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N +A    + +           S +  D+D FKQ+ND +GH  GD ++  +  
Sbjct: 318 DSLTGLANRNALFRQIQTLITSDCLTPGFSFMLMDLDNFKQVNDTYGHDKGDMLLLQVVG 377

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINISSGPSIHI 218
           Q+     + +   RLGG+EFA    G   Q+A  L+    KII+N   +  +S    ++ 
Sbjct: 378 QIKTCLDSSIMFARLGGDEFALLLPGVVTQKA--LSQLAEKIIKNVYRRYELSKDKGVYS 435

Query: 219 TISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260
           ++S GIA R  ++ ++   ++  ADQA+Y++K +GRNR   F++
Sbjct: 436 SVSIGIA-RFPEDALNLEQLLNCADQAMYISKANGRNRYHFFTE 478


>gi|322633664|gb|EFY30405.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
          Length = 406

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 390

Query: 257 CFS 259
            FS
Sbjct: 391 VFS 393


>gi|320328734|gb|EFW84734.1| hypothetical protein PsgRace4_17948 [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 359

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 10/161 (6%)

Query: 104 SRIDCLSGLLNHSAFISSL------GSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           SR D L+GLLN  A+ ++L      G       ++   DID+FK +ND +GH  GD+VI 
Sbjct: 197 SRRDSLTGLLNQGAWRAALEEEYALGKREVGSATLALIDIDHFKAVNDVYGHLTGDQVIK 256

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
                L  V  +    GR+GG+EF     GS E +A  L   L++ +  +       P +
Sbjct: 257 LFGTVLGAVKRSTDIAGRIGGDEFGLILRGSDEVQATKLLCRLQQQLARTFTTEPELPVV 316

Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            ++I  G+A        +   +   D+ALY AK+ GRN++V
Sbjct: 317 SLSI--GVATFGLEYGGVEGWLRSCDRALYEAKRQGRNQIV 355


>gi|315127663|ref|YP_004069666.1| two-component response regulator [Pseudoalteromonas sp. SM9913]
 gi|315016177|gb|ADT69515.1| two-component response regulator [Pseudoalteromonas sp. SM9913]
          Length = 299

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 72/134 (53%), Gaps = 10/134 (7%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV--FGTPMFVGRLGGEEFAAAALG 186
           L ++  DID+FK+ ND +GH  GD+ +  ++  L      G+  FV R GGEEF A    
Sbjct: 166 LCVLLIDIDHFKRYNDCYGHRAGDECLKTVAKTLAAQCERGSD-FVARYGGEEFVAVLPE 224

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSI---HITISAGIA--ERCHKEPISTIIYRAD 241
           +++Q A   AN LR  +  + +NI    S+   H+TIS GIA  E         ++  AD
Sbjct: 225 TNQQGAIAFANKLRNAV--NDLNIEHNASLNATHVTISIGIASSESSQAYTEKALLEEAD 282

Query: 242 QALYVAKKSGRNRV 255
             LY AKK GRN++
Sbjct: 283 SGLYNAKKLGRNQI 296


>gi|302035772|ref|YP_003796094.1| putative signal transduction response regulator, receiver and
           diguanylate cyclase domain (fragment) [Candidatus
           Nitrospira defluvii]
 gi|300603836|emb|CBK40168.1| putative Signal transduction response regulator, receiver and
           diguanylate cyclase domain (fragment) [Candidatus
           Nitrospira defluvii]
          Length = 310

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 13/169 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148
           +  R++ L++ D L+GL+N + F   L          +  L+I+  D+D FK +ND  GH
Sbjct: 126 AQERLTYLAQHDQLTGLINRALFRDRLIHAMARSKRKDHPLAIMLLDLDRFKAVNDTLGH 185

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQ 207
            VGD+++  ++ +L+        V R+GG+EF A   G S   +  ++A   ++I+E+  
Sbjct: 186 DVGDQLLKVVATRLLECVREVDTVARMGGDEFTAILEGISGVADVLVVA---KRIVESIS 242

Query: 208 INISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
                GP  I I +S GI       E I  ++  AD+A+Y AK+ G +R
Sbjct: 243 TPFEIGPHRISIGVSIGITLYPLDDEDIDELLRHADKAMYAAKQQGGSR 291


>gi|269966222|ref|ZP_06180311.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269829137|gb|EEZ83382.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 405

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 83/158 (52%), Gaps = 5/158 (3%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +++  D L+GL N           N + +I   DID+FKQ+ND  GH  GD V+  +++ 
Sbjct: 253 KMANQDALTGLWNRRFLFEQPHVENAQRNIAMLDIDFFKQVNDTHGHEGGDAVLVMIANI 312

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L + F   + V RLGGEEF   A G  +     L   +R+ IE + I      +I +T S
Sbjct: 313 LKIYFPNDI-VARLGGEEFCIQASGDYDGFLTRLEQ-MRQRIEKTPITYLC-KNILVTAS 369

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            G++    +  +   I  AD+ LY+AK++GRN+++  S
Sbjct: 370 IGVSNI--EGELEQQIKVADERLYMAKENGRNQIISSS 405


>gi|254000469|ref|YP_003052532.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4]
 gi|253987148|gb|ACT52005.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4]
          Length = 782

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 17/231 (7%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIIS-ITISLLLGYISGSILKELFIS 96
            +A +I I+ I+   +  T        L   LS++ ++ +  S+LL      +  E  I 
Sbjct: 276 LMAMLIAISTIYFMMMDTTTPIAKSIALGSCLSIIALAMVRQSILLAESERLLTAEQLIE 335

Query: 97  YN--RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
               R   L+  D L+GL N   F   L          N ++ ++F DID+FK IND+ G
Sbjct: 336 EGQMRYQHLAHHDILTGLPNRLLFQDRLTHALALSARNNNRVGMLFIDIDHFKNINDSLG 395

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIEN 205
           H +GD+++  + ++L +         RLGG+EF      L ++ + A I +N L  +   
Sbjct: 396 HVIGDELLVAIVERLKLRIREQDTFARLGGDEFVLLIEQLQNASEAATIASNLLEAL--K 453

Query: 206 SQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254
           +  ++S    + I+ S GI+  C +  +  + +I  AD A+Y AK +GRNR
Sbjct: 454 TPFHLSGNCEVVISASIGISV-CPEDTQDATQLIRNADSAMYRAKDTGRNR 503


>gi|224373076|ref|YP_002607448.1| ggdef domain protein [Nautilia profundicola AmH]
 gi|223589136|gb|ACM92872.1| ggdef domain protein [Nautilia profundicola AmH]
          Length = 391

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 106/214 (49%), Gaps = 19/214 (8%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE--LFISYNRISQLSR---IDC 108
            L  +  ++ I  E  S+V I I  S+    IS     E    I++  IS++++    D 
Sbjct: 181 DLEEYLNIDLIFDEKPSIVNIEIGDSIKTYEISYKKADENHKIITFKNISEINKKIYTDE 240

Query: 109 LSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           L+   N   ++SS+ +   N+ L  +  DID FKQIND  GH +GD V+  LS+ +    
Sbjct: 241 LTKAFNRK-YLSSISNKLLNKNLCFIILDIDNFKQINDTKGHLIGDIVLQILSEVIRDNL 299

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHITISAGIA 225
               +  R GGEEF        + E AA +A  LR+ IE +           +T S G++
Sbjct: 300 RKDDYFIRWGGEEFLIIPNNVEDSETAAKIAEHLRQAIEKTNF----MEVDKVTCSFGVS 355

Query: 226 ERCH----KEPISTIIYRADQALYVAKKSGRNRV 255
             C+    K+ I  +  +AD+ALY AK++G+N+V
Sbjct: 356 --CNSVKTKDDIKNLFKKADKALYKAKETGKNKV 387


>gi|224373747|ref|YP_002608119.1| diguanylate cyclase [Nautilia profundicola AmH]
 gi|223588457|gb|ACM92193.1| diguanylate cyclase [Nautilia profundicola AmH]
          Length = 469

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 75/133 (56%), Gaps = 6/133 (4%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKV-IAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           N ++ I+  DID FK+IND +GH  GD V I+ +S    ++    +F+ R GGEEF    
Sbjct: 338 NTQVGIIMLDIDDFKKINDTYGHDTGDLVLISLVSTIKQIIRKNDIFI-RYGGEEFVIIL 396

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQ 242
             S+ +    +A  +RK +E  +I+I        TIS GI+E  HK+   I   I RAD 
Sbjct: 397 PNSNIENTYKIAEKIRKEVEKIKIHIGD-KHFSFTISIGISE-IHKDDSSIYEAIKRADI 454

Query: 243 ALYVAKKSGRNRV 255
            LY AK++G+NRV
Sbjct: 455 NLYKAKRNGKNRV 467


>gi|170020293|ref|YP_001725247.1| diguanylate cyclase with PAS/PAC sensor [Escherichia coli ATCC
           8739]
 gi|169755221|gb|ACA77920.1| diguanylate cyclase with PAS/PAC sensor [Escherichia coli ATCC
           8739]
          Length = 410

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D + FK IND +GH  GD+V+  L+
Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTNRFKHINDLYGHSKGDEVLCALA 315

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409


>gi|84385152|ref|ZP_00988184.1| Sensory box/GGDEF family protein [Vibrio splendidus 12B01]
 gi|84379749|gb|EAP96600.1| Sensory box/GGDEF family protein [Vibrio splendidus 12B01]
          Length = 353

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 19/170 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYN---EKLS-----IVFFDIDYFKQINDNFGHPV 150
           R+  L   D L+G  N   F   L  Y+   E+       +   D+D+FK INDN GH  
Sbjct: 184 RLRMLVDTDSLTGCWNRRRFDKDLNHYSNLAERYGYTHSCLALIDLDHFKAINDNHGHDQ 243

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD  +  +++ L         V R+GGEEFA     ++  EA      L+++       I
Sbjct: 244 GDSALKEVAELLRNNSRDTDIVARVGGEEFAILMPETNLAEAFEAMYRLKEV-------I 296

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259
           + G ++++T+S+G++E    +  +   YR AD+ALY AK +GRNRV   S
Sbjct: 297 TKGTTLNLTVSSGVSE---IQAQAEATYRSADKALYRAKGNGRNRVCSSS 343


>gi|148546421|ref|YP_001266523.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1]
 gi|148510479|gb|ABQ77339.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1]
          Length = 754

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 34/192 (17%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
           +L +L  +   + Q +  D L+ LLN   F        + +  S N +L+++F DID+FK
Sbjct: 275 LLSQLDQARASLQQAAHYDALTNLLNRRGFNQVFAERLVETQASEN-RLAVMFLDIDHFK 333

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN--- 197
           +IND+ GH  GD+++  ++  +     +   V R GG+EF      +S  EA  LA    
Sbjct: 334 RINDSLGHDAGDELLKVIAHHIKAATRSHDLVARFGGDEFCVVTSLNSRDEARHLAQRIM 393

Query: 198 -------DL--RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
                  DL  R+++  + I IS  P        G AE         ++  AD ALY +K
Sbjct: 394 QRMKDPIDLGGRRMVMTTSIGISIFPD-----DGGTAEE--------LLKHADLALYQSK 440

Query: 249 KSGRNRVVCFSD 260
            +GRN +  F+D
Sbjct: 441 DNGRNSLNFFND 452


>gi|300871898|ref|YP_003786771.1| putative GGDEF domain-containing protein [Brachyspira pilosicoli
           95/1000]
 gi|300689599|gb|ADK32270.1| putative GGDEF domain protein [Brachyspira pilosicoli 95/1000]
          Length = 274

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 88/168 (52%), Gaps = 5/168 (2%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-SIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           ++S L+  D L+ L N    +  L +  +++ SI+  D+D FK  ND++GH VGD V+  
Sbjct: 104 KLSFLANRDKLTNLYNRGYLLKYLENKKDEIYSIIIIDLDKFKHYNDSYGHNVGDHVLKI 163

Query: 158 LSDQLVVVFGTPMF---VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
            S  +        +   + R GGEEF       +++E   +   +RK I  +  + +   
Sbjct: 164 ASRVMRETIKNIKYSSLLARYGGEEFIIVIDTKTKKELFNIMETIRKTIYETDFS-TDEY 222

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           S+  T S G A +   + I+++I +AD+ALY AK++GRN+ +  +  E
Sbjct: 223 SLKATASFGGAIKTDNDTINSLIEKADKALYEAKETGRNKSIINNHTE 270


>gi|228951120|ref|ZP_04113236.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|229068313|ref|ZP_04201616.1| Sensory box/GGDEF [Bacillus cereus F65185]
 gi|229077940|ref|ZP_04210550.1| Sensory box/GGDEF [Bacillus cereus Rock4-2]
 gi|229177154|ref|ZP_04304543.1| Sensory box/GGDEF [Bacillus cereus 172560W]
 gi|228606335|gb|EEK63767.1| Sensory box/GGDEF [Bacillus cereus 172560W]
 gi|228705398|gb|EEL57774.1| Sensory box/GGDEF [Bacillus cereus Rock4-2]
 gi|228714774|gb|EEL66646.1| Sensory box/GGDEF [Bacillus cereus F65185]
 gi|228808530|gb|EEM55033.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 569

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF        + +   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMRQLATSVLSCFQAP- 253

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             I  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 254 -FILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306


>gi|315446070|ref|YP_004078949.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
           protein [Mycobacterium sp. Spyr1]
 gi|315264373|gb|ADU01115.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
           protein [Mycobacterium sp. Spyr1]
          Length = 642

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 91/184 (49%), Gaps = 32/184 (17%)

Query: 100 ISQLSRIDCLSGLLN------HSA-FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           ++ ++  D L+GL N      H+A   S   +  E+++ +F D+D+FK  ND +GH  GD
Sbjct: 430 LTDMANTDPLTGLANRRGLAQHAADLWSRARAAGEQVTALFIDLDHFKSFNDLYGHQAGD 489

Query: 153 K-------VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIE 204
           +       V+A L+D  V V        R GGEEFA   +G  + QE    A+ L   I 
Sbjct: 490 ECLRRVADVLAHLADDSVCV------AARYGGEEFAVVLVGCDAPQE---FADGLAAAIR 540

Query: 205 NSQINISSGPSIHITISAGIA--------ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +I      S  +TIS G+A        +   +  ++ ++ RAD+ALYVAK  GRN + 
Sbjct: 541 ALRIPHLGTDSGMVTISVGVATLRPWHTTDSDAEAVVAELLDRADKALYVAKSRGRNAIS 600

Query: 257 CFSD 260
            + D
Sbjct: 601 IYGD 604


>gi|256111459|ref|ZP_05452479.1| GGDEF domain-containing protein [Brucella melitensis bv. 3 str.
           Ether]
          Length = 237

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 23/229 (10%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY- 97
           IAT+I I+       G+    G++   V  L  +++   I++ LG    S L+EL  SY 
Sbjct: 18  IATIISIS----LSTGIRFALGVKSDTVTILVRLLLPFLIAMPLGVFWFSRLEELERSYR 73

Query: 98  ------NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFGH 148
                 N +++++ +D L+GLLN  +FI    + N+     +F   D+DY KQIND +GH
Sbjct: 74  TAVKRANELARVASVDPLTGLLNRRSFIQQFNAANKAGVRGWFLIVDVDYLKQINDQYGH 133

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILAN-DLRK--IIE 204
           P GD  I  ++  L     +   + R+GG+EF A    G+     ++L++  LR   ++ 
Sbjct: 134 PAGDDAIIAVAPALEDCLSSDSLIARIGGDEFCAFVPKGAINDVDSVLSDISLRADGLLR 193

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             + N+ S     +T+S G       +    ++  AD+ LY  KKS R 
Sbjct: 194 EKRPNVGS----SLTVSVGRISCKTGQIFEEVLSIADEQLY-RKKSQRQ 237


>gi|217969750|ref|YP_002354984.1| diguanylate cyclase [Thauera sp. MZ1T]
 gi|217507077|gb|ACK54088.1| diguanylate cyclase [Thauera sp. MZ1T]
          Length = 565

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 11/177 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
           G  L EL      +  L+R D L+GL N + F       ++S    +  L+++F DID F
Sbjct: 388 GQQLAELEHRRRELEHLARHDALTGLPNRALFDDRMAVALASARRDDGGLALLFVDIDDF 447

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K IND  GH VGD+V+  ++ ++           R+GG+EF     G +S ++A ++A+ 
Sbjct: 448 KPINDRLGHVVGDRVLEGVAARIRQSIRESDTAARIGGDEFVVLLPGIASAEDARVVADK 507

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNR 254
           +R  I+     +  G  + +++S G+A        ST + R AD A+Y  K  G+ R
Sbjct: 508 IRAAIDRP--FMIDGGELAVSVSMGLAHYPQDGSDSTTLARHADAAMYRDKAEGKAR 562


>gi|154248735|ref|YP_001409560.1| diguanylate cyclase [Fervidobacterium nodosum Rt17-B1]
 gi|154152671|gb|ABS59903.1| diguanylate cyclase [Fervidobacterium nodosum Rt17-B1]
          Length = 501

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 127/278 (45%), Gaps = 37/278 (13%)

Query: 12  WLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIG---LTPFYGLEYILVEN 68
           ++  +K  E+F   TF I  SIF  +FI   IF+  +  +++    +TP   +EY +  N
Sbjct: 230 YIVAQKPSEAFKV-TF-INLSIFTIMFILLFIFLLYMSAYFVTDTVVTPLQKIEYAIQNN 287

Query: 69  LSLVIIS-ITISLLLGYISGSI-------------LKEL-------FISYNRISQLSRID 107
              VI   +     +G +S +I             LKEL        +    + +L   D
Sbjct: 288 TPDVIERYVYQKDEIGELSRAIKHYLEQKEQINIYLKELESKNASLRMLNEEVRKLLEKD 347

Query: 108 CLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+GLL    F S +      S  +K  LS +  D D FK+IND +GH  GD+V+  + +
Sbjct: 348 TLTGLLTRYVFNSQIERLYVSSKADKIPLSAISIDADNFKKINDTYGHAEGDEVLKKIGE 407

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            ++       F  R+GGEE       +    A  +A  +R  +   Q    S P   +TI
Sbjct: 408 IILKNIRLSDFPIRMGGEEILILLPEADINAAYSIAERIRNKV---QEEFKSKPYT-VTI 463

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S G+ +   ++ I T + RAD ALYV+K +G+N+   F
Sbjct: 464 SLGVTQLKPEDTIETFLKRADDALYVSKTNGKNQTTIF 501


>gi|83644378|ref|YP_432813.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83632421|gb|ABC28388.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 928

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 85/164 (51%), Gaps = 5/164 (3%)

Query: 103 LSRIDCLSGLLNH-SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+R+   S L  H ++ I+S      +L+++F D+D FKQ+NDN GH VGDK++  +S +
Sbjct: 498 LTRLPNRSYLFEHLNSLIASHKREQARLAVLFIDLDRFKQVNDNLGHGVGDKLLQQVSTR 557

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITI 220
           L         + RLGG+EF        E+  AI    +  +++    + S G   +HI  
Sbjct: 558 LKSRLRESDMLARLGGDEFTVVLPHLREETDAIHVAKM--LLQQLADSFSVGDYELHIGA 615

Query: 221 SAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           S G+       E  ST+I  AD A+Y AK +GRN+   F +  N
Sbjct: 616 SIGVTLFPKDGEDASTLIKNADIAMYKAKDNGRNQYRFFEERMN 659


>gi|300789504|ref|YP_003769795.1| GGDEF domain-containing diguanylate cyclase [Amycolatopsis
           mediterranei U32]
 gi|299799018|gb|ADJ49393.1| GGDEF domain-containing diguanylate cyclase [Amycolatopsis
           mediterranei U32]
          Length = 480

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 20/182 (10%)

Query: 97  YNRISQLS------RIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +NR+++L       R D  +G+LN   +       +       ++L+++  D+D+FK IN
Sbjct: 290 FNRLAELDQLQNDVRTDPKTGILNMRGWSEAAERALERTSRSGDQLALLMVDLDHFKWIN 349

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHP GD V+  ++  L  V      VGR GGEEF        E      A  +R  I
Sbjct: 350 DTYGHPAGDDVLRTVAQTLDEVTRPSDLVGRFGGEEFLILLPDIDEDATWDAAERIRIAI 409

Query: 204 ENSQI---NISSGPSI--HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
               +   +    P+     T S G+A    H + +  ++  AD A+Y+AK++GR++ VC
Sbjct: 410 AKLHMVTTDKRGDPATIADRTTSIGVARHPRHGDTLERLLQSADAAVYLAKENGRDQ-VC 468

Query: 258 FS 259
           F+
Sbjct: 469 FA 470


>gi|281491144|ref|YP_003353124.1| diguanylate cyclase [Lactococcus lactis subsp. lactis KF147]
 gi|281374894|gb|ADA64413.1| Diguanylate cyclase with GAF sensor domain [Lactococcus lactis
           subsp. lactis KF147]
          Length = 351

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 94/188 (50%), Gaps = 19/188 (10%)

Query: 84  YISGSILKELFISYNRISQLSRI------DCLSGLLNHSAFISSLGSYNEK---LSIVFF 134
           Y+  +IL  +F+ Y  I+ + ++      D L+ + N S F + L    +K    S+   
Sbjct: 167 YVISTIL--VFVLYYMINDIKKMQKKATHDYLTKMKNRSEFQAKLEVLQKKKKIFSLAIL 224

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DIDYFK  ND+F H VGD V+  +S  L+   G  +   R+GGEEF   +L   E     
Sbjct: 225 DIDYFKLFNDSFNHLVGDLVLLEVSKVLLSFEGNKINCYRIGGEEF---SLVFEEINFVE 281

Query: 195 LANDLRKI-IENSQINIS----SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           + N L KI +   +INI      G    IT+S G++       I   I  AD ALY AK+
Sbjct: 282 VENKLEKIRLAVQKINIDEMLLDGEVRCITVSIGVSHIKAFSNIENYISSADDALYKAKE 341

Query: 250 SGRNRVVC 257
           +GRN++V 
Sbjct: 342 NGRNQLVV 349


>gi|260893325|ref|YP_003239422.1| diguanylate cyclase [Ammonifex degensii KC4]
 gi|260865466|gb|ACX52572.1| diguanylate cyclase [Ammonifex degensii KC4]
          Length = 414

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 12/190 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFF 134
           LG +  + L   ++ Y  + +L+  D L+GL N   F       +     Y  KL+I+  
Sbjct: 230 LGRLGAAALVNSYL-YREVKELAERDGLTGLYNRRKFWEIFLKELERAKRYRRKLAILLL 288

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK  ND FGH  GD+ +  + + +           R GGEEF    + +  + A  
Sbjct: 289 DVDNFKDYNDTFGHLAGDECLRRIGEVIGKEIRASDTAARYGGEEFVILLVETGGEGAVA 348

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +A  LR  +E+        P+I + ++    +    E + T    AD ALY AK+SG+NR
Sbjct: 349 VAERLRHRVEDIGKR-EPFPTISLGVAVFPEDAQSAEALLTC---ADNALYTAKRSGKNR 404

Query: 255 VVCFSDIENN 264
            V    I ++
Sbjct: 405 TVWRGKIRSS 414


>gi|150398040|ref|YP_001328507.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae
           WSM419]
 gi|150029555|gb|ABR61672.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae
           WSM419]
          Length = 661

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 12/176 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +LS  D L+GL N  A    L  Y           + V  D+D+FK+ ND +GH  GD+ 
Sbjct: 225 RLSHTDSLTGLDNRRAVDQKLRDYWSDWQRGGNSFAAVLIDVDFFKRYNDFYGHQEGDRC 284

Query: 155 IAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NI 210
           +  +++ L          +GR GGEEF   A   + + AA LA  +R+ +E   +     
Sbjct: 285 LVLVANALKDSIARYDASIGRYGGEEFIVLARLKTRERAAELAEAIRRSVEYLALPHEQR 344

Query: 211 SSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             G SI  +++ AG         +  +I+ AD+ALY AK +GRN    F   +  T
Sbjct: 345 RDGMSIVTVSVGAGFTRNQIGSKLERLIHEADRALYGAKANGRNCARLFDPNDPQT 400


>gi|28900924|ref|NP_800579.1| putative virulence-mediating protein VirC [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260366137|ref|ZP_05778597.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
 gi|260879779|ref|ZP_05892134.1| putative virulence-mediating protein VirC [Vibrio parahaemolyticus
           AN-5034]
 gi|260896824|ref|ZP_05905320.1| putative virulence-mediating protein VirC [Vibrio parahaemolyticus
           Peru-466]
 gi|260902989|ref|ZP_05911384.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|28809370|dbj|BAC62412.1| putative virulence-mediating protein VirC [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308087315|gb|EFO37010.1| putative virulence-mediating protein VirC [Vibrio parahaemolyticus
           Peru-466]
 gi|308092649|gb|EFO42344.1| putative virulence-mediating protein VirC [Vibrio parahaemolyticus
           AN-5034]
 gi|308108382|gb|EFO45922.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|308114774|gb|EFO52314.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
          Length = 637

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 18/168 (10%)

Query: 100 ISQLSRIDCLSGLLNH---SAFISSL--GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           ++Q S  D L+GL N      ++  +   + +   ++   D+D+FK  ND +GH +GD++
Sbjct: 468 LTQESTTDLLTGLHNRRYLEVWLEKMVRRTPDRTFALAVLDVDHFKAFNDTYGHDIGDQM 527

Query: 155 IAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           +  ++     +F      G    R GGEEF      +   + A     LR +IEN+ + I
Sbjct: 528 LMHIAS----IFNESTRSGDLLIRWGGEEFVLLVEVNDPNDCAKSLERLRHVIENTPLII 583

Query: 211 SSGPSIHITISAGIAERCH----KEPISTIIYRADQALYVAKKSGRNR 254
            S P I+ TIS G  +R      K+      + ADQALY AK++GRN+
Sbjct: 584 DSKP-INATISLGAVDRLSAQTIKQEWDQWFFLADQALYDAKQAGRNQ 630


>gi|194433825|ref|ZP_03066099.1| sensory box-containing diguanylate cyclase [Shigella dysenteriae
           1012]
 gi|194417928|gb|EDX34023.1| sensory box-containing diguanylate cyclase [Shigella dysenteriae
           1012]
 gi|332098150|gb|EGJ03123.1| hypothetical protein SD15574_0397 [Shigella dysenteriae 155-74]
          Length = 410

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 75/158 (47%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D  K IND +GH  GD+V+  L+
Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRLKHINDLYGHSKGDEVLCALA 315

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409


>gi|332558451|ref|ZP_08412773.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides WS8N]
 gi|332276163|gb|EGJ21478.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides WS8N]
          Length = 830

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 86/171 (50%), Gaps = 12/171 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  ++R D L+GL N   F       ++SL      ++++  D+D FK +ND  GHPVG
Sbjct: 390 QVFHMARHDMLTGLPNRHYFGDCYQEAVASLAP-ERSVAVLMLDLDGFKTVNDTRGHPVG 448

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINI 210
           D+V+  ++++L     +   V RLGG+EFA       SEQEA  LA   R I   S+   
Sbjct: 449 DQVLCEVANRLRTSVRSTDTVARLGGDEFAVIQTPIRSEQEACDLAR--RLIAAISKPFD 506

Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             G    +  S GIA  R   +    I+  AD ALY AK++GR     F +
Sbjct: 507 LEGAVPEVGASVGIAFARGRGDSAEEIMRYADVALYAAKQAGRGTFRVFDE 557


>gi|313682226|ref|YP_004059964.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313155086|gb|ADR33764.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 408

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 19/193 (9%)

Query: 81  LLGYISGSILKELFI---------SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--- 128
           + GY++ ++   LFI         +Y  + + S ID L+ + N   F+       ++   
Sbjct: 199 IAGYLAVTVTGLLFIQFFGRRLAKAYRMLEEQSIIDPLTEIPNRRFFMKRAKEEFQRAER 258

Query: 129 ----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAA 183
               ++++  DIDYFK  ND +GH  GD  +  +++ +      P   + R GGEEF   
Sbjct: 259 DHTPIALIMVDIDYFKGFNDRYGHIEGDVTLKTVAETMKQQLRRPPDCIARYGGEEFVIM 318

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKE-PISTIIYRAD 241
              ++ + AA +A  LR  IE  +IN  +      +TIS G+A   H        + +AD
Sbjct: 319 LPNTTPEGAAKVAELLRTEIEALKINNEASKCADVVTISLGVATAPHDGVSFEIQLKQAD 378

Query: 242 QALYVAKKSGRNR 254
           +ALY AK++GRNR
Sbjct: 379 EALYAAKQNGRNR 391


>gi|291279544|ref|YP_003496379.1| hypothetical protein DEFDS_1154 [Deferribacter desulfuricans SSM1]
 gi|290754246|dbj|BAI80623.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 302

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 81/181 (44%), Gaps = 13/181 (7%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFF 134
           L + S  +L+E      ++  L   D L+ L NHS F   L  Y       N+  ++   
Sbjct: 122 LAFASTYVLEE----KEKMEDLVNKDNLTNLYNHSFFQKKLREYFTLAKKTNKIFNVAIL 177

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK++ND +GH  GDKV+   +  L         V R GGEEF        +     
Sbjct: 178 DIDFFKKVNDTYGHLAGDKVLKDFAKILKENTRKTDIVARYGGEEFGIIIPDCDKTCTEK 237

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           +   ++ ++ N          I IT SAG  E   K +    ++  AD  LY++K SGRN
Sbjct: 238 VLEKIKDVVTNHIFEFED-YKIKITFSAGFTEYNDKYKSAKEMLANADIGLYMSKNSGRN 296

Query: 254 R 254
           R
Sbjct: 297 R 297


>gi|221639437|ref|YP_002525699.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodobacter sphaeroides KD131]
 gi|221160218|gb|ACM01198.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodobacter sphaeroides KD131]
          Length = 816

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 86/171 (50%), Gaps = 12/171 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  ++R D L+GL N   F       ++SL      ++++  D+D FK +ND  GHPVG
Sbjct: 376 QVFHMARHDMLTGLPNRHYFGDCYQEAVASLAP-ERSVAVLMLDLDGFKTVNDTRGHPVG 434

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINI 210
           D+V+  ++++L     +   V RLGG+EFA       SEQEA  LA   R I   S+   
Sbjct: 435 DQVLCEVANRLRTSVRSTDTVARLGGDEFAVIQTPIRSEQEACDLAR--RLIAAISKPFD 492

Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             G    +  S GIA  R   +    I+  AD ALY AK++GR     F +
Sbjct: 493 LEGAVPEVGASVGIAFARGRGDSAEEIMRYADVALYAAKQAGRGTFRVFDE 543


>gi|204927721|ref|ZP_03218922.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|204323063|gb|EDZ08259.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 663

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFS 259
            FS
Sbjct: 394 VFS 396


>gi|192293404|ref|YP_001994009.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
 gi|192287153|gb|ACF03534.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
          Length = 400

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 93/185 (50%), Gaps = 14/185 (7%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVF 133
           L+ YI  +  ++L +     ++L+R D L+ L N    +         L  + E  +++ 
Sbjct: 183 LIDYIHATTAEQLTLRAE-ATRLARADALTNLPNRRHLVEHFNELAKRLARHGENFAVIS 241

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D+FK+ ND FGH  GD+++  +++++  +        R+GG+EF       S+   A
Sbjct: 242 LDLDFFKEANDRFGHAAGDEILRIVAERMTELLADDDLAARIGGDEFVVVQANVSD---A 298

Query: 194 ILANDL-RKIIEN-SQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKS 250
             A+DL R+I+   S+    +G ++ I  S G A        +  ++++AD+ALY  K++
Sbjct: 299 AEADDLGRRIVAALSEPYAIAGEAVMIGASFGRALAPADGATLDELLHKADEALYAVKRN 358

Query: 251 GRNRV 255
              RV
Sbjct: 359 RPGRV 363


>gi|83643744|ref|YP_432179.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631787|gb|ABC27754.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 469

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 89/182 (48%), Gaps = 21/182 (11%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQI 142
           L EL  + + + +L+  D L+G+ N   F               E LS++  DID FK+ 
Sbjct: 282 LLELVRNRDLLKKLTLTDALTGVPNRRNFQEVYRREWFRACRAREPLSLIMIDIDNFKRF 341

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQE-----AAILA 196
           ND +GHP GD  +  ++  +  V      FV RLGGEEF    L  ++ E     A  + 
Sbjct: 342 NDFYGHPAGDACLQKVAKMIYQVRKRNTDFVARLGGEEF-VVILPDTDAEGGQRFADAML 400

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRN 253
           N +RK+    + N   G  I +TISAG+   C+  P      ++  AD+ LY AKK GRN
Sbjct: 401 NAVRKLAIAHEHN--DGKKI-VTISAGLVT-CYPGPHISRENLLSTADECLYQAKKEGRN 456

Query: 254 RV 255
           RV
Sbjct: 457 RV 458


>gi|332142675|ref|YP_004428413.1| sensory box/GGDEF family protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552697|gb|AEA99415.1| sensory box/GGDEF family protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 456

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 92/174 (52%), Gaps = 17/174 (9%)

Query: 99  RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ +L+  D L+GL N        S+ ++   +   +L ++F DID FK IND+FGH  G
Sbjct: 25  QMERLANFDALTGLPNRQFLMKILSSELTKARTNRSELGLLFVDIDGFKSINDSFGHDTG 84

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEF--AAAALGSS---EQEAAILANDLRKIIENS 206
           DK +  +S  +  +      +GRLGG+EF   A  +G     E  AA L   + +    +
Sbjct: 85  DKFLLHISVIMSKLLDEAYTLGRLGGDEFIIIAPDIGDPKTLEDMAAKLVVAVSRTHNFN 144

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            + + SG    +++   +A  C+ E +S++I  AD A+Y AK SG+ R + F++
Sbjct: 145 TLRLDSG----VSVGLALASDCNYE-LSSLITNADVAMYKAKGSGKARFMWFNE 193


>gi|330502616|ref|YP_004379485.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas
           mendocina NK-01]
 gi|328916902|gb|AEB57733.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas mendocina
           NK-01]
          Length = 554

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 82/162 (50%), Gaps = 18/162 (11%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPVGDKVI--- 155
           D L+ L N   F+  L +   +L        +I+ FD+DYFK IND +GH VGD+ +   
Sbjct: 395 DFLTQLANRRHFMHRLEAELARLQRNPEQSAAILMFDLDYFKAINDRWGHNVGDQALRHF 454

Query: 156 -AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
            A LS QL          GRLGGEEFA     +S  +A   A  ++  +  + I   +G 
Sbjct: 455 AAILSSQLRRTD----TAGRLGGEEFAVVLSEASLDKAMHFATRIQNELAGTPIQ-HAGE 509

Query: 215 SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I++ +S GI+        +   + R+D ALY AK+ GRNR+
Sbjct: 510 QIYLAVSVGISLLNAGDASVEAALSRSDIALYCAKRGGRNRI 551


>gi|303238372|ref|ZP_07324907.1| response regulator receiver modulated diguanylate cyclase
           [Acetivibrio cellulolyticus CD2]
 gi|302594076|gb|EFL63789.1| response regulator receiver modulated diguanylate cyclase
           [Acetivibrio cellulolyticus CD2]
          Length = 349

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 89/172 (51%), Gaps = 14/172 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + QL+  D L+ L N    +  L S       Y E +S++  DIDYFK+IND+FGH  GD
Sbjct: 147 LEQLAITDSLTELYNKGYILKRLESELTRSARYKESISLIIIDIDYFKKINDSFGHIAGD 206

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++  LS +L         V R GGEEF      +S   AAILA  +R+ ++N +I  + 
Sbjct: 207 NILKRLSKKLAESVRDVDIVARYGGEEFLVICPNTSISGAAILAERIRENVQN-EIFQAG 265

Query: 213 GPSIHITISAGIAERCHKEPIS------TIIYRADQALYVAKKSGRNRVVCF 258
             +I +T+S G++        +       ++  AD ALY AK +GRN+V  F
Sbjct: 266 STNIKLTLSLGLSNLSPSTLAAGNFSSGKLLEEADLALYKAKSAGRNKVAAF 317


>gi|296104056|ref|YP_003614202.1| putative diguanylate cyclase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058515|gb|ADF63253.1| putative diguanylate cyclase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 459

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 9/173 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFK 140
           ++L ELF    R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 281 TLLHELFDEVAR--HEVGVDVLTRLLNRRFLPTIFKREITQASRSGTPLSVLLIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           QIND +GH  GD+++  ++        T  +V R GG+EF       +E +   +A  +R
Sbjct: 339 QINDTWGHNTGDEILRKVAGAFYDNVRTCDYVFRYGGDEFLIVLTEITEADTLRIAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           + +E  +++  +G  I +++S G A          +I  AD+ALY AK+ GRN
Sbjct: 399 RRVEKIKVHSPTGEPIPLSLSIGAAMFNGHPDYERLIQAADEALYGAKRRGRN 451


>gi|225378479|ref|ZP_03755700.1| hypothetical protein ROSEINA2194_04147 [Roseburia inulinivorans DSM
           16841]
 gi|225209702|gb|EEG92056.1| hypothetical protein ROSEINA2194_04147 [Roseburia inulinivorans DSM
           16841]
          Length = 641

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 85/169 (50%), Gaps = 10/169 (5%)

Query: 105 RIDCLSGLLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           ++D L+ + N +A    + ++ EK +     +   DID FK+IND FGH VGD VI+ ++
Sbjct: 282 QLDPLTRIYNKTASGEIVDAFLEKSTQGTHVLYVIDIDDFKKINDTFGHTVGDMVISDIA 341

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHI 218
             +   F     VGR+GG+EF      +S QEA   A  L     N Q  +S  G  I +
Sbjct: 342 TLIREQFTDEAVVGRVGGDEFMVFVKDTSLQEAEAKAEQL---CTNVQKTLSGDGAVIVV 398

Query: 219 TISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           T+S G+A         ST+  RAD A+Y  KK+G+N      + E   C
Sbjct: 399 TLSVGMAVTGKDGYDYSTLFERADHAMYHIKKNGKNHYGFAGETEEGDC 447


>gi|160898922|ref|YP_001564504.1| diguanylate cyclase [Delftia acidovorans SPH-1]
 gi|160364506|gb|ABX36119.1| diguanylate cyclase [Delftia acidovorans SPH-1]
          Length = 409

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 15/176 (8%)

Query: 88  SILKELFISYNRISQ----LSR---IDCLSGLLNHSAF-------ISSLGSYNEKLSIVF 133
           ++L EL   + R+ Q    L R    D L+GL N   F       + S     +KL+++F
Sbjct: 223 ALLAELQTRHERLQQQNSALERQASRDSLTGLANRLHFEQRLQQALDSAAESGQKLAVLF 282

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D D FKQ+ND +GH VGD ++  +  +L         V RLGG+EFA           A
Sbjct: 283 LDNDRFKQVNDAYGHAVGDVLLKAVGARLRSQVRETDLVARLGGDEFAILLYPVGGGGDA 342

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAK 248
            +  D  +      + +S G  +  ++SAG+A    H + + T++  ADQA+Y AK
Sbjct: 343 QMVRDKIEAAMREPLVVSEGVVLQPSVSAGVALFPKHGQSMETLMRHADQAMYQAK 398


>gi|78356674|ref|YP_388123.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219079|gb|ABB38428.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 561

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 86/163 (52%), Gaps = 8/163 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+G+ N +AF   L    E++       ++++ D++YFK++ND +GH VGD V
Sbjct: 388 RLATKDDLTGVSNRAAFRDMLKKSVEEVKESSICSALLYIDLNYFKKVNDKYGHYVGDMV 447

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSG 213
           +  ++ +L     T   +GR+GG+EF     G    E A+ LA D+R +++    N+   
Sbjct: 448 LREVAARLSSRVRTADVIGRVGGDEFCVLLRGVGGVERAVSLAEDMRGVLDKPFENLPEE 507

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             + ++I   + +          + RAD A+Y AK +GR  VV
Sbjct: 508 HRLGMSIGVLLLQPPDVVDAGEAMRRADSAMYHAKTTGRGVVV 550


>gi|103487777|ref|YP_617338.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingopyxis alaskensis RB2256]
 gi|98977854|gb|ABF54005.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingopyxis alaskensis RB2256]
          Length = 784

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 21/186 (11%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
           GS + E   +  +I++++R D L+GL N  +    L            + +++  D+D F
Sbjct: 337 GSDVTEQRATAEQIARMARFDNLTGLPNRLSLNEDLARALTRAIEAKSRCALLMIDLDRF 396

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA------ 193
           K +ND  GHPVGDK++A ++ +L  +    M  GRLGG+EFA      S    A      
Sbjct: 397 KAVNDTLGHPVGDKLLAQVAARLKGLMERGMTCGRLGGDEFAVVLHNLSSPAVAEDLAQR 456

Query: 194 ILANDLRK-IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           I+A   R  +++N Q+ + +     I  + G         + T+   AD ALY +K  G 
Sbjct: 457 IIATISRPYVVDNHQLFVGASVGYAIGPTDGAT-------VETLTRNADLALYKSKDRGG 509

Query: 253 NRVVCF 258
           N V  +
Sbjct: 510 NVVAAY 515


>gi|205359697|ref|ZP_03224392.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205343837|gb|EDZ30601.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
          Length = 663

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFS 259
            FS
Sbjct: 394 VFS 396


>gi|169336972|ref|ZP_02620191.2| signal transduction protein containing diguanilate
           cyclase/phosphodiesterase domain [Clostridium botulinum
           C str. Eklund]
 gi|169296491|gb|EDS78624.1| signal transduction protein containing diguanilate
           cyclase/phosphodiesterase domain [Clostridium botulinum
           C str. Eklund]
          Length = 368

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           YN+I +++  D L G+ N   F + +          E  +IV  DID FK +ND +GH V
Sbjct: 200 YNKIREIAIRDPLIGIYNRKHFFNIVEKKIKDDKNKECFAIVMMDIDDFKNVNDKYGHQV 259

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEE--FAAAALGSSEQEAAILANDLRKIIENSQI 208
           GD+V+      ++        VGR GGEE     +   S E+   ++ +  RKI EN  I
Sbjct: 260 GDEVLKKTGKIILDNLNKCDIVGRYGGEEIIMYVSNFNSKEEVYNVIDSIRRKISEN--I 317

Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            +  G  + IT S GI       + ++++I  AD  LY+AK+S +N VV
Sbjct: 318 IMHEGMEVSITASFGIGYYMEDGKTLNSVISVADNRLYIAKESNKNMVV 366


>gi|161613817|ref|YP_001587782.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161363181|gb|ABX66949.1| hypothetical protein SPAB_01551 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 663

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFS 259
            FS
Sbjct: 394 VFS 396


>gi|157370239|ref|YP_001478228.1| diguanylate cyclase [Serratia proteamaculans 568]
 gi|157322003|gb|ABV41100.1| diguanylate cyclase [Serratia proteamaculans 568]
          Length = 366

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 64/127 (50%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D FK+IND +GH  GD ++  +   L     +  FVGR GGEEF         +
Sbjct: 224 LMILDLDNFKRINDTYGHLAGDLLLTQMGQLLQNSVRSEDFVGRYGGEEFMVITASYDPK 283

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
               +A  +R+ +E +   +  G    IT+S G +       +   I   D+ALY AK+ 
Sbjct: 284 IIGGVAERIRRSVETTIFLLDEGNETQITVSIGASLYLPGMAVDKAIEVTDEALYEAKRG 343

Query: 251 GRNRVVC 257
           G+N+VVC
Sbjct: 344 GKNQVVC 350


>gi|66047433|ref|YP_237274.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63258140|gb|AAY39236.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 361

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 110/231 (47%), Gaps = 19/231 (8%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG--- 87
            S+FF  FI  +   A I+L          L  + V+++ L  + +  S LLG       
Sbjct: 108 MSVFFVKFIDYIAAAALIWLIMWQ----TDLTAVGVDHVPLFYVFLISSTLLGGCLNATF 163

Query: 88  -SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVF--FDIDYFKQ 141
            S++ +   + +R  +LS  D L+   N  A ++ L +     +K S+ F   D+D+FK 
Sbjct: 164 LSLIMQTMAARDRYQELSETDTLTHAPNRRALVAGLNTALASADKSSLWFAMLDLDHFKS 223

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH VGD V+   +  L    G   F GRLGGEEF    L ++    AI A  L  
Sbjct: 224 INDTHGHDVGDNVLISFATLLKSTKGLISF-GRLGGEEF-GVILSAANATDAIHA--LEG 279

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           ++  +Q +      +  + S G+A     E I+ ++  AD+ LY AK+SGR
Sbjct: 280 LLMLAQHD--DAAQVPYSFSGGVASLSRVETINDLLKEADENLYYAKRSGR 328


>gi|17548601|ref|NP_521941.1| hypothetical protein RS00808 [Ralstonia solanacearum GMI1000]
 gi|17430849|emb|CAD17531.1| probable signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum GMI1000]
          Length = 578

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 90/183 (49%), Gaps = 21/183 (11%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNE-KLSIVFFDIDYFKQINDNFGH 148
           +  RI  L+  D L+GLLN  A         +L   N  ++S++F D+D FK +ND  GH
Sbjct: 132 AQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRNRSRVSVMFLDLDRFKNVNDTLGH 191

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+++  ++ +L         V RLGG+EF            ++     R++ E    
Sbjct: 192 QFGDQLLREVAARLQACAREADTVARLGGDEFVVML-------ESLDGTGTRRVAERILA 244

Query: 209 NISS-----GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF-SDI 261
            I +     G  + + +S GIA   H  +  +T++ +AD A+Y+AK+ GRN    F SD+
Sbjct: 245 AIGAPFHIDGQELFLGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNFQTFTSDL 304

Query: 262 ENN 264
           ++ 
Sbjct: 305 DDR 307


>gi|87308849|ref|ZP_01090988.1| putative diguanylate cyclase (GGDEF) [Blastopirellula marina DSM
           3645]
 gi|87288560|gb|EAQ80455.1| putative diguanylate cyclase (GGDEF) [Blastopirellula marina DSM
           3645]
          Length = 544

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 15/163 (9%)

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+ L N   F       +          S++  DID+FK+ ND +GH  GD+V+ 
Sbjct: 168 ARTDALTALPNRRVFDHEMSRRLQEFQKTRRPTSLMMLDIDHFKKFNDTYGHMAGDEVLK 227

Query: 157 FLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +  L  V  T   +G    R GGEEFA    GS+  ++ I A  + + + + +I +  
Sbjct: 228 SAARTLERVAST---IGGAAIRFGGEEFAVILPGSNIFDSQIAAARVVRAVASMEI-VFE 283

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G  + +T S G+AE    +  + +I RAD ALY AK +GRNR 
Sbjct: 284 GQLLQVTTSCGVAEVNRNDDEANLIKRADSALYAAKNAGRNRA 326


>gi|117926804|ref|YP_867421.1| diguanylate cyclase with PAS/PAC sensor [Magnetococcus sp. MC-1]
 gi|117610560|gb|ABK46015.1| diguanylate cyclase with PAS/PAC sensor [Magnetococcus sp. MC-1]
          Length = 654

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 93/175 (53%), Gaps = 14/175 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           + +   + + + QLS  D L  L N   F   L            +L+++  D+D FKQ+
Sbjct: 471 MGQQMAAQDEMQQLSFYDVLCALPNQVLFKEQLLQGLREASRRAGELAVLMLDLDRFKQV 530

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSEQEAAILANDLR 200
           ND++G  +GD+++  ++ +L  +  +   V R+GG+EFA     L  + ++ A++A   +
Sbjct: 531 NDSYGVEIGDRLLQEVAKRLRTLLRSEDTVARMGGDEFAIVLRQLSEAPEDVALVA---Q 587

Query: 201 KIIENSQINISSGPSI-HITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
           KII+   + I+  P    I +S GI+    H E    ++ +A+QA+ +AK+SGRN
Sbjct: 588 KIIDALSMPIAINPQWCQIGVSIGISIYPKHGEQAEELLTKANQAMQMAKQSGRN 642


>gi|330827759|ref|YP_004390711.1| Gaf domain/GGDEF domain/eal domain-containing protein [Aeromonas
           veronii B565]
 gi|328802895|gb|AEB48094.1| Gaf domain/GGDEF domain/eal domain protein [Aeromonas veronii B565]
          Length = 758

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 7/167 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++ ++QL     L   LNH+  ++    Y     +++F D+D+FKQIND  GH  GD+++
Sbjct: 333 HDPLTQLPNRALLMNHLNHA--MTHYNRYKSPGFAVIFIDVDHFKQINDTLGHSAGDQLL 390

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGP 214
             +S +L         V RLGG+EF      S   +       L +II          G 
Sbjct: 391 KEVSRRLQTCIRQNDLVARLGGDEFVIYLDSSKSDDDISPV--LNRIISRLSYPFRLLGN 448

Query: 215 SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            + IT+S G++    +   IS ++++AD A+Y AK++GR+R+V +SD
Sbjct: 449 ELSITVSLGVSSVSEQTSDISQLLHQADLAMYQAKRNGRSRIVSYSD 495


>gi|113868485|ref|YP_726974.1| signal transduction protein [Ralstonia eutropha H16]
 gi|113527261|emb|CAJ93606.1| signal transduction protein [Ralstonia eutropha H16]
          Length = 421

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 92/178 (51%), Gaps = 19/178 (10%)

Query: 89  ILKELFISYNRISQLSRI-------DCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           +L EL    N++   +R        D L+GLLN +AF+ +L        + +E  ++++ 
Sbjct: 229 LLDELQTWQNQMQHENRSLAHRANHDALTGLLNRAAFVEALEHAVRHAAANDEYAAVLYL 288

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEA 192
           D D FK IND  GH  GD V+  ++ ++         V R+GG+EFA  AAAL +     
Sbjct: 289 DSDDFKNINDRHGHAAGDAVLVAVAQRIRASLRAGDTVARIGGDEFAVLAAALRAPRDAI 348

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKK 249
            I  + L+ +  ++ I++  G ++  ++S G+A    H +    +++ AD A+Y AK+
Sbjct: 349 HIAEHILQAM--SAPIDLPDGSTVQASLSIGLAVFPVHAQGSQALLHAADAAMYGAKR 404


>gi|325925953|ref|ZP_08187320.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
 gi|325543618|gb|EGD15034.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
          Length = 469

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 16/200 (8%)

Query: 71  LVIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
           +V+ ++  +LLLG   ++    L+ +  +  ++S  + +D L+G+ N  AF   L     
Sbjct: 269 IVVAALGCTLLLGVGIWLDLQ-LRRMHRNEAKLSTEAWVDALTGIANRRAFDHRLSRALQ 327

Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEE 179
                   LS++  D+D+FK  ND +GH  GD  +  ++  +      +     R GGEE
Sbjct: 328 DAVRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCSRRSEDLAARYGGEE 387

Query: 180 FAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIAE-RCHKEPIS--T 235
           F      +    A  LA+ +R  + E   +++SS  S H+T+S G A     + P+S   
Sbjct: 388 FGMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGAATFEPGEAPLSPNA 447

Query: 236 IIYRADQALYVAKKSGRNRV 255
           I++ AD ALY AK+ GRNR 
Sbjct: 448 IVHDADSALYRAKQKGRNRT 467


>gi|293605198|ref|ZP_06687586.1| diguanylate cyclase [Achromobacter piechaudii ATCC 43553]
 gi|292816383|gb|EFF75476.1| diguanylate cyclase [Achromobacter piechaudii ATCC 43553]
          Length = 315

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 18/179 (10%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFK 140
           S+ KEL +       LS  D L+ + N   F SS       + NE+  LS++ FD+D+FK
Sbjct: 137 SLQKELEV-------LSFKDGLTNIANRRRFDSSFELEWERARNERQPLSVLLFDVDFFK 189

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199
           Q ND +GH  GDK +  ++  L +    P   V R GGEEF     G+    A  +A   
Sbjct: 190 QYNDLYGHTQGDKCLVDIAQTLSLALDGPRDLVARYGGEEFVVLLPGADASVAWKVAERC 249

Query: 200 RKIIENSQINISSGP---SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +++++   I  +  P    + ++I AG      +   ++ I   D+ LY AK +GR+R+
Sbjct: 250 QRLLQKKSIVHALSPHGRRVTVSIGAGTLVPDEQADRASFIRAVDKQLYAAKNNGRDRI 308


>gi|260775887|ref|ZP_05884783.1| intracellular signaling protein (PAS,GAF,GGDEF domains) [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608303|gb|EEX34472.1| intracellular signaling protein (PAS,GAF,GGDEF domains) [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 471

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 8/173 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           L  L  + N++  L+  D L+GL N     S+L         Y   L +  FD D+FK++
Sbjct: 290 LDALKHARNQLEVLASTDPLTGLANRRYIESTLDKQLDLHHRYGLPLVVALFDFDHFKRV 349

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH +GD+ +      +  +        R GGEEF A    +S   A  L   +   
Sbjct: 350 NDQFGHQMGDEALQRFGAIVATLTRKEDVYARWGGEEFLALLPNTSLAGALTLIERITHS 409

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++   +  +  P I +++S G+     ++  S+++ RAD  LY AK +GR+R 
Sbjct: 410 VKAQPLEYNGAP-IALSVSVGVTAVHEQDNASSVLKRADALLYRAKANGRDRT 461


>gi|71907842|ref|YP_285429.1| GGDEF [Dechloromonas aromatica RCB]
 gi|71847463|gb|AAZ46959.1| GGDEF protein [Dechloromonas aromatica RCB]
          Length = 226

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 78/152 (51%), Gaps = 7/152 (4%)

Query: 107 DCLSGLLNHSAFISSLGSY--NEKLSI----VFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+ LLN   F  +   +  N  +++       D+D FK IND  GHPVGD  +A  + 
Sbjct: 35  DDLTPLLNRRGFRRACDRWAGNGPMAMSACCAMIDLDGFKAINDRHGHPVGDAALAHFAT 94

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            L         + RLGG+EFA   +  S  +A +L   L++ +  S +++  G ++ +  
Sbjct: 95  TLRRHLRPADTIARLGGDEFALILMECSGDDACLLLERLQQALAGSPLSVPGG-AVPLRF 153

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           SAG+AE    E +  ++ RAD AL  AK+ G+
Sbjct: 154 SAGVAELHAAESLGQVLERADAALLDAKQLGK 185


>gi|145225719|ref|YP_001136397.1| diguanylate cyclase with PAS/PAC sensor [Mycobacterium gilvum
           PYR-GCK]
 gi|145218205|gb|ABP47609.1| diguanylate cyclase with PAS/PAC sensor [Mycobacterium gilvum
           PYR-GCK]
          Length = 643

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 91/184 (49%), Gaps = 32/184 (17%)

Query: 100 ISQLSRIDCLSGLLN------HSA-FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           ++ ++  D L+GL N      H+A   S   +  E+++ +F D+D+FK  ND +GH  GD
Sbjct: 430 LTDMANTDPLTGLANRRGLAQHAADLWSRARAAGEQVTALFIDLDHFKSFNDLYGHQAGD 489

Query: 153 K-------VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIE 204
           +       V+A L+D  V V        R GGEEFA   +G  + QE    A+ L   I 
Sbjct: 490 ECLRRVADVLAHLADDSVCV------AARYGGEEFAVVLVGCDAPQE---FADGLAAAIR 540

Query: 205 NSQINISSGPSIHITISAGIA--------ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +I      S  +TIS G+A        +   +  ++ ++ RAD+ALYVAK  GRN + 
Sbjct: 541 ALRIPHLGTDSGMVTISVGVATLRPWHTTDSDAEAVVAELLDRADKALYVAKSRGRNAIS 600

Query: 257 CFSD 260
            + D
Sbjct: 601 IYGD 604


>gi|152967484|ref|YP_001363268.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216]
 gi|151362001|gb|ABS05004.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216]
          Length = 501

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 27/206 (13%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
           +E  ++ + S+ + LL+      +L+ L    +R++ L+R D L+GL N     + L   
Sbjct: 286 LEAWAVALSSVVLFLLVVMRMSGLLRHLEGQASRLADLARTDALTGLPNRRTSDAELERL 345

Query: 126 NEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL------VVVFGTP--- 169
             +       L +   D+D FK  ND FGH  GD+++   +               P   
Sbjct: 346 QTRSRAEGSPLCVAVLDLDRFKAFNDTFGHQAGDRLLVQSAQAWRGALEAGGAAAGPDRT 405

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
             +GR GGEEF    LG          +DL   +   Q   ++ P+   T+SAG+A    
Sbjct: 406 ALLGRWGGEEFVLLLLG----------HDLPASVAVVQALAATTPAGQ-TVSAGVARWDG 454

Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255
            E  + +  RAD ALY AK  GR++V
Sbjct: 455 LESAAEVFGRADAALYAAKTGGRDQV 480


>gi|107102875|ref|ZP_01366793.1| hypothetical protein PaerPA_01003943 [Pseudomonas aeruginosa PACS2]
          Length = 381

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 22/178 (12%)

Query: 100 ISQLSRI----DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
           IS+L R+    D L+GL N  +F   L           + L+++  D+D+FK  ND +GH
Sbjct: 206 ISRLLRVMADHDSLTGLHNRRSFNQHLDRLWRQAQREQKTLALLLCDVDHFKAYNDRYGH 265

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
             GD V+  +          P+ +  RLGGEEFA    G++E EA + A  LR  ++  +
Sbjct: 266 QAGDAVLQRIGAVFEANARRPLDMAVRLGGEEFALLLYGANEHEARLRAEALRAQVQALR 325

Query: 208 I-NISSGPSIHITISAGIAERCHKEPISTIIYR-------ADQALYVAKKSGRNRVVC 257
           + + +S  +  +T+S G++  C        + R       AD+ALY AK  GRN+VV 
Sbjct: 326 MEHEASDTAREVTLSVGVS--CLWPTPGNDLKRLYDLYEHADRALYEAKAFGRNQVVA 381


>gi|323494641|ref|ZP_08099744.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
 gi|323311074|gb|EGA64235.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
          Length = 348

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 78/157 (49%), Gaps = 11/157 (7%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSD--Q 161
           D L+G+ N      SL S  E     S+   D+D FK +ND FGH VGD+V+  ++   Q
Sbjct: 178 DALTGVYNRHELNDSLESAIEHYPCSSLSLIDVDNFKYVNDLFGHDVGDRVLISIAACIQ 237

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
             +     +F  RLGG+EF     G  +    +LA +    I N    + S     ITIS
Sbjct: 238 QEMELDDKLF--RLGGDEFLLLHHGKDQ----LLAEEKSSRILNRVRQLPSPSEQPITIS 291

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            GIAE    E     I RAD ALY +K++GRNR+  +
Sbjct: 292 IGIAECQPSEQAREWIKRADLALYQSKRAGRNRMTRY 328


>gi|320085801|emb|CBY95577.1| Protein gmr [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 660

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 390

Query: 257 CFS 259
            FS
Sbjct: 391 VFS 393


>gi|197118094|ref|YP_002138521.1| response receiver sensor diguanylate cyclase/phosphodiesterase
           [Geobacter bemidjiensis Bem]
 gi|197087454|gb|ACH38725.1| response receiver sensor diguanylate cyclase/phosphodiesterase, GAF
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 869

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 95/184 (51%), Gaps = 27/184 (14%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D ++ L N  + ++ LG        ++ +L+++F D+D FK IND+ GH +G
Sbjct: 431 RVEYLAHYDMVTKLPNRFSLMARLGQALELAKRFSSRLAVIFIDLDRFKNINDSLGHHIG 490

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILANDLRKI-------- 202
           D+++  ++ +L     +   V RLGG+EF     L +S   A   A+ +RKI        
Sbjct: 491 DRLLFQVAGRLQDTIRSADIVARLGGDEFVVVLPLINSNISA---AHAVRKIQQTLSQGY 547

Query: 203 -IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            +E+ ++NI+  PSI I++          E +  ++  AD A+Y AK +GRN    F+  
Sbjct: 548 TVESHELNIT--PSIGISVYP-----TDGETVQELMKHADLAMYHAKSAGRNSYQFFTQE 600

Query: 262 ENNT 265
            N T
Sbjct: 601 MNLT 604


>gi|160896954|ref|YP_001562536.1| response regulator receiver modulated diguanylate cyclase [Delftia
           acidovorans SPH-1]
 gi|160362538|gb|ABX34151.1| response regulator receiver modulated diguanylate cyclase [Delftia
           acidovorans SPH-1]
          Length = 308

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 15/175 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHS--------AFISSLGSYNEKLSIVFFDIDYFKQIND 144
           L +    + +L+ +D L+GL N          A+  SL +  E + +   DID+FKQ ND
Sbjct: 131 LALQRQALERLAMVDGLTGLANRRHFDDVLERAYRRSLRT-GEPVGLALIDIDHFKQYND 189

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD+ +  ++  L      P     R GGEEFA    G S  +A  +A   R+ +
Sbjct: 190 CYGHVQGDEALKAVAATLQRHARRPYDLAARFGGEEFALILPGES--DAPAMAEHFRQEV 247

Query: 204 ENSQINISSGPSI-HITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               I  ++ P+   +T+S G+    +    P+ T + +AD  LY AK  GRNR+
Sbjct: 248 LRLSIAHAASPTAPQLTVSCGVLTVRQPSAAPLETWLQKADGLLYQAKAQGRNRI 302


>gi|89902336|ref|YP_524807.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Rhodoferax ferrireducens T118]
 gi|89347073|gb|ABD71276.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 658

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 79/136 (58%), Gaps = 7/136 (5%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALG 186
           L+++  D+D FK IND+FGH VGD+++  ++ +LV    T   VGR GG+EF+     + 
Sbjct: 263 LALLMLDLDRFKDINDSFGHLVGDELLQLVATRLVKQVRTIDTVGRFGGDEFSVLMEDVA 322

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQAL 244
            +EQ AA +AND+ +++ +    +SSG  + I  S GI+        P   ++ +AD AL
Sbjct: 323 GAEQ-AARVANDIIRVL-SEPYGLSSGVEVRIGASVGISIYPDNGLTP-ELMLQQADSAL 379

Query: 245 YVAKKSGRNRVVCFSD 260
           Y AK  GR R   FS+
Sbjct: 380 YQAKIEGRGRFAYFSE 395


>gi|26991637|ref|NP_747062.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida KT2440]
 gi|24986731|gb|AAN70526.1|AE016694_9 sensory box protein/response regulator [Pseudomonas putida KT2440]
          Length = 708

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 85/159 (53%), Gaps = 15/159 (9%)

Query: 107 DCLSGLLNHSAFISSLGS---YNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN   F  +       NE+     ++++ D+D FK+IND+ GH  GD+V+ +++
Sbjct: 281 DPLTGLLNRRGFYQAAEGALLRNERSDKAQALMYMDLDGFKRINDSLGHDAGDRVLRWVA 340

Query: 160 DQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +QL    G+   + R+GG+EF A   +L   EQ        L ++  + +++   G  + 
Sbjct: 341 EQLKDCLGSEALLARMGGDEFTALFDSLPYPEQAGRFAERLLERVSISHEVD---GLDVC 397

Query: 218 ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + +S GIA    C    +  ++  AD A+Y AK++GR +
Sbjct: 398 LGVSIGIATYPDCGAN-VEGLLRSADAAMYAAKQAGRQQ 435


>gi|332142048|ref|YP_004427786.1| sensory box/GGDEF family protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552070|gb|AEA98788.1| sensory box/GGDEF family protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 798

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 13/176 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGH 148
           EL  S +++  L+  D L+G  N +   S + +YNE     SI+F DID FK IND  GH
Sbjct: 357 ELKSSESQLKYLAFTDALTGAGNRNLLNSIVETYNESCEPCSIIFIDIDEFKLINDTHGH 416

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILANDLRKIIE 204
            VGD+++   + +          V R GG+EF      +     ++  + L+  L+KI +
Sbjct: 417 EVGDEILRACASRFKAALRGDDTVIRFGGDEFVVVTSTTCHKLLKKMTSRLSLSLKKIFK 476

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                 +SG    IT S G+A        + ++  AD A++ AK+ G+N VV FSD
Sbjct: 477 T-----TSG-DFQITASIGLASSTESMSPTELLKNADIAMFSAKQGGKNGVVTFSD 526


>gi|304398353|ref|ZP_07380227.1| diguanylate cyclase [Pantoea sp. aB]
 gi|304354219|gb|EFM18592.1| diguanylate cyclase [Pantoea sp. aB]
          Length = 521

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 9/164 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R++  ++ D L+ +LN     + L  Y    +  S++  DID+FK +ND++GH VGD+VI
Sbjct: 359 RLNSEAQTDPLTQVLNRRGLNAVLEYYRTLRQPFSVLALDIDHFKNVNDSWGHDVGDRVI 418

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L         V R GGEEF     G++  EA I+A  +R  I  + +       
Sbjct: 419 QQVASTLRASARQSDVVCRNGGEEFLMLLPGTALDEAQIIAERVRVGIAEAWLTDVG--- 475

Query: 216 IHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             IT+S G+A         +   + +AD ALY AK +GRN V+ 
Sbjct: 476 -RITLSIGVAAWNGSQDAGLENSLKQADAALYEAKSAGRNCVIV 518


>gi|261886506|ref|ZP_06010545.1| GGDEF family protein [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 385

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 19/211 (9%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSI---LKELFISYNRISQLSRIDCLSGLLNHSA 117
           LE +   N  LVI++  +  L   +   +    KEL  +   + +LS  D L+ + N   
Sbjct: 179 LEMMSKRNKDLVIVNNELLELNKDLENKVQDRTKELIEANENLEKLSMADQLTEMPNRRH 238

Query: 118 FISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
            + +L          +  LS++  D+DYFK++NDN+GH  GD ++  ++  L     T  
Sbjct: 239 AMKTLDLLWKENLDSDRGLSVLMIDLDYFKEVNDNYGHDAGDYILRLVARTLKESVRTDD 298

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            V RLGG+EF      +  + +  +AN+L K I + ++      +     SA I   C  
Sbjct: 299 IVCRLGGDEFLVICPNTMLEGSIQVANNLLKDIHSLKV---KTKNCEWNGSASIGLACMS 355

Query: 231 EPI---STIIYRADQALYVAKKSGRNRVVCF 258
             I   S +I  AD  +Y AK+SG+N   CF
Sbjct: 356 PDIKNYSKLIKPADDKVYEAKQSGKN---CF 383


>gi|283797989|ref|ZP_06347142.1| putative sensory box protein [Clostridium sp. M62/1]
 gi|291074289|gb|EFE11653.1| putative sensory box protein [Clostridium sp. M62/1]
          Length = 267

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 7/162 (4%)

Query: 107 DCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+G LN       +      ++K ++   DID FK++ND +GH  GD+V+  L++ L 
Sbjct: 102 DPLTGTLNRKGAAGCIRQSFMTDKKGTLFLLDIDNFKKVNDIYGHQAGDRVLMALANILK 161

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
           V       V R+GG+EF     G   +   ++ +  R IIE  ++     P   I+IS G
Sbjct: 162 VHTRRQDTVSRMGGDEFLIYLSGCVAKN--VVEDRARSIIEAFRLEGKDYPMAGISISIG 219

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRN--RVVCFSDIEN 263
           ++ R  +E    +  +ADQALY AK++G+   R+    D EN
Sbjct: 220 VSMREKEESFQELYLQADQALYEAKRTGKGQYRLRKKEDSEN 261


>gi|307152922|ref|YP_003888306.1| diguanylate cyclase [Cyanothece sp. PCC 7822]
 gi|306983150|gb|ADN15031.1| diguanylate cyclase [Cyanothece sp. PCC 7822]
          Length = 459

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 129/258 (50%), Gaps = 22/258 (8%)

Query: 12  WLCHEKNL-ESFSPHTFMIYFSIFF-SIFIATVIFIANIFLFYIGLT----PFYGLEYIL 65
           WL  E++L  +F  + F++   + F S   AT + + +I    +GL     PF     + 
Sbjct: 194 WLIKEQDLLPAFIIYPFLVLAPLRFGSKGAATALLLVSIMAL-LGLVHDTGPFVASSPL- 251

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAF 118
            + L L+ + + ++ ++G +  + + +L  +   + Q++  D L+GL N        +A 
Sbjct: 252 -KTLVLLWLFVNVAAVVGLVLAASISQLIQAKQHLEQMALYDSLTGLDNRILLTDKITAA 310

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           ++    Y     +++ D+D FK IND  GH +GD+V+  ++ +L +       V R+GG+
Sbjct: 311 LARAKRYQNYAVVLYLDLDGFKLINDTMGHDMGDQVLIEVAKRLKMCVRQTDAVARIGGD 370

Query: 179 EFAAAALGSSE-QEAAILANDLRKIIENS-QINISSGPSIHITISAGIA-ERCHKEPIST 235
           EF       +  Q A  +A ++ +II    Q++      +HI +S G+A    +   ++ 
Sbjct: 371 EFVVLLQDVNHIQGAERVAQEIIQIISRPIQLH---NKQMHIGVSIGVAVAPGNGTNLNQ 427

Query: 236 IIYRADQALYVAKKSGRN 253
           ++  AD A+Y AK+SG+N
Sbjct: 428 LLRNADHAMYHAKQSGKN 445


>gi|195873266|ref|ZP_03080052.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195634533|gb|EDX52885.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 663

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 394 VFSPKMNQ 401


>gi|56461635|ref|YP_156916.1| intracellular signaling protein [Idiomarina loihiensis L2TR]
 gi|56180645|gb|AAV83367.1| Intracellular signaling protein (GAF,GGDEF domains) [Idiomarina
           loihiensis L2TR]
          Length = 369

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 19/165 (11%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N  AF       I     +   L+++  DID FK  ND++GH  GD+ +  ++
Sbjct: 202 DGLTGIANRRAFDERITNEIQRASRHKTPLALLIIDIDQFKPYNDHYGHLQGDQALKSVA 261

Query: 160 DQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS--- 215
           D +         F+ R GGEEF A    ++E++     N L + + N  + I   PS   
Sbjct: 262 DAMFDQLQRNTDFIARYGGEEFVAVISATNEEKTKESMNQLLEAVRN--LKIKHEPSEVE 319

Query: 216 IHITISAG------IAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            ++TIS G       A+   ++ I+ +I +AD ALY AK  GRNR
Sbjct: 320 PYLTISIGGYIHKPRADEDTEDLIARMISKADSALYRAKSDGRNR 364


>gi|89092509|ref|ZP_01165462.1| probable signalling protein [Oceanospirillum sp. MED92]
 gi|89083021|gb|EAR62240.1| probable signalling protein [Oceanospirillum sp. MED92]
          Length = 381

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 9/167 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL--GSYNEKLSIVFF--DIDYFKQINDNF 146
           +EL  + + +  LS+ D L+G+ N S F+  L      E+ SI     D+D FK IND +
Sbjct: 209 RELDEANSELLYLSQHDSLTGIGNRSWFLQQLRHARVGEEGSIALLMIDLDGFKPINDRY 268

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GHP GD V+A +  +L +V      V R+GG+EFA      +  + A+  N    II+  
Sbjct: 269 GHPTGDTVLAQIGQRLKLVVRACDGVARIGGDEFAVILRDLARLDEAV--NITEGIIDAI 326

Query: 207 QINISSGPSIHITI--SAGIA-ERCHKEPISTIIYRADQALYVAKKS 250
           +  I    S H+++  S GIA +   +E  + +I RAD A+Y AK+ 
Sbjct: 327 KQPIEVSASCHVSVGCSIGIAFDHTSEESDAALITRADTAMYDAKRQ 373


>gi|254247987|ref|ZP_04941308.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
 gi|124872763|gb|EAY64479.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
          Length = 466

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 9/177 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S L+EL  +  ++  ++  D ++G  N   FI+ +               ++  D+D FK
Sbjct: 289 SALQELRRTNQKLEYMAATDPMTGASNRRQFIAQVEREIVRAERDGTPFCLLALDLDNFK 348

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH +GD+V+  +  Q +        + R+GGEEF A       + A + A  +R
Sbjct: 349 NINDAYGHQIGDEVLRGVVRQCLEAIRPAGALARVGGEEFMALLPEMPLEGARMTAERVR 408

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I +S   +     + +T+S G+A+       +  ++   D+ LY AK+ GRNRVV
Sbjct: 409 SSISSSPFGLDF-KRVQVTVSVGVAQYGVDGSTVDALLRVVDERLYQAKREGRNRVV 464


>gi|107028918|ref|YP_626013.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
 gi|116689924|ref|YP_835547.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
 gi|105898082|gb|ABF81040.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
 gi|116648013|gb|ABK08654.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
          Length = 466

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 9/177 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S L+EL  +  ++  ++  D ++G  N   FI+ +               ++  D+D FK
Sbjct: 289 SALQELRRTNQKLEYMAATDPMTGASNRRQFIAQVEREIVRAERDGTPFCLLALDLDNFK 348

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH +GD+V+  +  Q +        + R+GGEEF A       + A + A  +R
Sbjct: 349 NINDAYGHQIGDEVLRGVVRQCLEAIRPAGALARVGGEEFMALLPEMPLEGARMTAERVR 408

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I +S   +     + +T+S G+A+       +  ++   D+ LY AK+ GRNRVV
Sbjct: 409 SSISSSPFGLDF-KRVQVTVSVGVAQYGVDGSTVDALLRVVDERLYQAKREGRNRVV 464


>gi|332994949|gb|AEF05004.1| response regulator/GGDEF domain-containing protein [Alteromonas sp.
           SN2]
          Length = 418

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 7/175 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL----SIVFFDIDYFKQINDNFG 147
           E   S   I + +  D L+GL N   F  ++    +KL    ++   D+D+FK+IND +G
Sbjct: 245 EYIESVEAIRRAANTDYLTGLPNRRHFFYTVTVQYKKLPEQHALALIDLDHFKRINDTYG 304

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  +++ L V F   + V R GGEEF           A    N  R  ++ + 
Sbjct: 305 HDAGDLVLKAVANLLQVHFNDTL-VARFGGEEFCVYLPKIDIHNAQERLNRFRLALQKTP 363

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           I I    S+ +T S G+      + I T++  AD+ LY AK +GRN+V   S+ +
Sbjct: 364 IQIGE-ESVKVTCSIGLCN-TPTQNIETLLSSADKLLYKAKNAGRNQVHVTSETQ 416


>gi|260769414|ref|ZP_05878347.1| sensory box/GGDEF domain/EAL domain protein [Vibrio furnissii CIP
           102972]
 gi|260614752|gb|EEX39938.1| sensory box/GGDEF domain/EAL domain protein [Vibrio furnissii CIP
           102972]
          Length = 315

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 81/167 (48%), Gaps = 10/167 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQINDNFGHPVGDKV 154
           +S+L+R D L+ LLN  A  S     N   S     +VF DID FK +ND+ GH  GD V
Sbjct: 151 LSRLARQDPLTNLLNRKALHSEFNRINHAKSESLAAMVFIDIDNFKTVNDHLGHKAGDAV 210

Query: 155 IAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  +++ L   F  P  V  RLGG+EF         Q    L + L  + + ++  +   
Sbjct: 211 LVVVAEWL-KQFAPPQSVIARLGGDEFVLLCEQEETQALNTLTDQL--LTQVAEPVVLEN 267

Query: 214 PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I +S G+ E    +    T+  RAD+A+Y  K+SG+N V   S
Sbjct: 268 GKAQIGLSIGVCEFAPGQHDFDTLYERADEAMYQVKRSGKNGVRWVS 314


>gi|238911908|ref|ZP_04655745.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 664

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 220 AGTDITEERRTQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 279

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 280 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 339

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 340 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSDSLIRTADTAMYNAKEGGRGQFC 394

Query: 257 CFS 259
            FS
Sbjct: 395 VFS 397


>gi|205356975|ref|ZP_03223632.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205325110|gb|EDZ12949.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 663

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFS 259
            FS
Sbjct: 394 VFS 396


>gi|295837612|ref|ZP_06824545.1| sensory box protein [Streptomyces sp. SPB74]
 gi|197696029|gb|EDY42962.1| sensory box protein [Streptomyces sp. SPB74]
          Length = 206

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 79/155 (50%), Gaps = 15/155 (9%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +R D L+GL    AF              +V  DID+FK+IND  GH VGD ++A ++ +
Sbjct: 29  ARRDPLTGLWTRDAFTRRARRLLRDRRAVVVLADIDHFKRINDTHGHAVGDALLASVARR 88

Query: 162 LVVVFGTPMFVGRLGGEEFAAAAL---GSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           L    G     GRLGG+EFAA  L   G++    A+L   L +  E     +++      
Sbjct: 89  LDHATGADGVCGRLGGDEFAAVLLDRDGTAADLLALLHGVLARPAEGQPAEVAT------ 142

Query: 219 TISAGIAERCHKEP---ISTIIYRADQALYVAKKS 250
           T+S G   R    P   +S+++ RAD+A+Y AK++
Sbjct: 143 TVSLGWV-RAADHPGGDLSSLLERADEAMYEAKRA 176


>gi|311105057|ref|YP_003977910.1| diguanylate cyclase [Achromobacter xylosoxidans A8]
 gi|310759746|gb|ADP15195.1| diguanylate cyclase, GGDEF domain protein 4 [Achromobacter
           xylosoxidans A8]
          Length = 478

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 77/158 (48%), Gaps = 7/158 (4%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ +LN     S +G           + S++  DID+FK IND  GH  GD+V+   +
Sbjct: 320 DPLTNVLNRRFLPSVIGREISIARRQRSEFSVLLLDIDHFKAINDQHGHSGGDQVLRQFA 379

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L     +  FV R GGEEF    + +  + A   A  L   I     NI     +HIT
Sbjct: 380 EVLHQACRSSDFVFRYGGEEFLVVLVDAPREAALAAAEKLGAEIRRHVFNIPEAGPLHIT 439

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            S G+A        + +I RADQALY AK++GR+R V 
Sbjct: 440 ASIGVATFDGHPDYAYLIDRADQALYQAKQAGRDRAVA 477


>gi|260775313|ref|ZP_05884210.1| pole remodelling regulatory diguanylate cyclase [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608494|gb|EEX34659.1| pole remodelling regulatory diguanylate cyclase [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 405

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 7/160 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           + + +L+  D L+GL N     +   +      I   DID+FK +ND FGH  GD  +  
Sbjct: 249 DELYKLANQDTLTGLWNRRFLFNQSCTEGSARYIAMLDIDHFKSVNDTFGHDGGDAALKT 308

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +++ L + F   + V R GGEEF   +  + ++    L   +R+ IENS I   +G  I 
Sbjct: 309 IANILKIYFPEDVVV-RFGGEEFCVQSYSTLDEFITRLEK-MRQRIENSIIK-HNGQDIT 365

Query: 218 ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
           +TIS G+   C  E  +   I  AD  LY AK+ GRN+++
Sbjct: 366 LTISIGV---CSLEGTLEQQIKLADDCLYTAKEHGRNQII 402


>gi|222836476|gb|EEE74883.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 12/167 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFIS------SLGSY-NEKLSIVFFDIDYFKQINDNFGH 148
           +  RI QL+  D L+ L N S  ++      S+ S+   +L++VF D+D FKQ+ND+ GH
Sbjct: 420 ARRRIRQLAFYDGLTTLPNRSLLLAQAEQALSVASHEGHELAVVFIDLDRFKQVNDSLGH 479

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII-ENSQ 207
           P GD+++  ++ ++     T    GRL G+EF          +AA +   L+  + E   
Sbjct: 480 PAGDRLLCSVAQRIQAELRTGDIAGRLSGDEFVIVLPHCGGAQAAEVIERLQSALGEPCM 539

Query: 208 INISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
           I+     S+  T S GIA        + T+++RAD A+Y AK  GR 
Sbjct: 540 IDDV---SLASTASCGIAVFPADGRDMETLLHRADMAMYQAKSGGRG 583


>gi|319426571|gb|ADV54645.1| bifunctional diguanylate cyclase with GAF and PAS sensory
           domains/signaling protein with EAL domain protein
           [Shewanella putrefaciens 200]
          Length = 747

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 13/164 (7%)

Query: 107 DCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N +A    + +           S +  D+D FKQ+ND +GH  GD ++  +  
Sbjct: 318 DSLTGLANRNALFRQIQTLITSDCLTPGFSFMLMDLDNFKQVNDTYGHDKGDMLLLQVVG 377

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINISSGPSIHI 218
           Q+     + +   RLGG+EFA    G   Q+A  L+    KII+N   +  +S    ++ 
Sbjct: 378 QIKTCLDSSIMFARLGGDEFALLLPGVVTQKA--LSQLAEKIIKNVYRRYELSKDKGVYS 435

Query: 219 TISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260
           ++S GIA R  ++ ++   ++  ADQA+Y++K +GRNR   F++
Sbjct: 436 SVSIGIA-RFPEDALNLEQLLNCADQAMYISKANGRNRYHFFTE 478


>gi|152986044|ref|YP_001350002.1| hypothetical protein PSPA7_4658 [Pseudomonas aeruginosa PA7]
 gi|150961202|gb|ABR83227.1| hypothetical protein PSPA7_4658 [Pseudomonas aeruginosa PA7]
          Length = 818

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 88/177 (49%), Gaps = 17/177 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+S  +  D L+GL N   F       +  L   N + +++F D+D FK +ND  GH  G
Sbjct: 370 RLSWQATHDALTGLTNRREFEYRLQMALERLERSNGRHALMFLDLDQFKLVNDTCGHAAG 429

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  +   L         + RLGG+EF         ++A  +A+ LRK +++     S
Sbjct: 430 DELLRQVCTLLQQGLREGDTLARLGGDEFGILLENCPAEKAVEIADHLRKTVQDLHFTWS 489

Query: 212 SGPSIHITISAGIAERCHKEP-ISTI---IYRADQALYVAKKSGRNRVVCF--SDIE 262
             P  + T+S G+    H  P IST+   +  AD A Y+AK+ GRNRV  F   D+E
Sbjct: 490 GQP-FNCTVSVGLV---HLLPGISTLEEALRSADMACYMAKEKGRNRVQVFHQDDVE 542


>gi|89097659|ref|ZP_01170547.1| hypothetical protein B14911_14727 [Bacillus sp. NRRL B-14911]
 gi|89087518|gb|EAR66631.1| hypothetical protein B14911_14727 [Bacillus sp. NRRL B-14911]
          Length = 557

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 87/164 (53%), Gaps = 21/164 (12%)

Query: 106 IDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA-- 156
           ID L+ + N      SL  Y       N+  SI   D+D+FKQ+ND +GHP GD++++  
Sbjct: 258 IDELTQVYNRRFLKDSLKRYLKELERSNQYFSIAVLDLDHFKQVNDMYGHPAGDRILSEF 317

Query: 157 --FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
             +L D   V  G  +F  R GGEEF      +++ ++  + + L     +S+  I  G 
Sbjct: 318 AQYLKDH--VRIGDIVF--RYGGEEFILLLPRTNDHDSKEVVSRLLSGF-SSRTFIEGGA 372

Query: 215 SIHITISAGIAERCHKEPISTI---IYRADQALYVAKKSGRNRV 255
            + +T SAG+    H +P +T+   I  ADQALY AK++GR RV
Sbjct: 373 ELKMTFSAGVY-MVH-DPSATVAEAIKTADQALYKAKRNGRARV 414


>gi|88798395|ref|ZP_01113980.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Reinekea sp. MED297]
 gi|88778835|gb|EAR10025.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Reinekea sp. MED297]
          Length = 723

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 19/178 (10%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           +  ++++L++ D L+GL+N +AF       +S    + + L+++F D+D FK INDN GH
Sbjct: 279 TEEQLARLAQYDALTGLVNRNAFNGLLKKALSRSARHEQPLALLFIDLDQFKTINDNHGH 338

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQ 207
            +GD ++  ++ +L         +GRLGG+EF        + ++AA ++  +   +E + 
Sbjct: 339 EIGDSLLQEVAMRLTDCVRNGDIIGRLGGDEFVIMLESLQATKDAARVSQSVLDALE-AP 397

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYR-----ADQALYVAKKSGRNRVVCFSD 260
             I  G  I I  S GIA      P S +  R     AD A+Y +K+ GRNR   F+D
Sbjct: 398 FTI-RGHQIFIGASIGIA----VYPDSALTARELLRCADIAMYRSKEEGRNRYRFFTD 450


>gi|87308440|ref|ZP_01090581.1| hypothetical protein DSM3645_12756 [Blastopirellula marina DSM
           3645]
 gi|87288997|gb|EAQ80890.1| hypothetical protein DSM3645_12756 [Blastopirellula marina DSM
           3645]
          Length = 300

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 111/238 (46%), Gaps = 27/238 (11%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG---------- 87
           F+  V ++A++    + L+ F  + +I+ +   L   S  ++L   +++           
Sbjct: 65  FVVAVCWVASLQTAMV-LSLFCAMAWIIDDTFFLHSTSPGVTLTEVWLTTVHACFFLAIV 123

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           S++  L  +Y R    +RID L+GLLN +AF        +        L++ F D D FK
Sbjct: 124 SVIWRLRCAYERERVFARIDSLTGLLNITAFNDTAEREAARCRRSGSPLTVAFIDCDNFK 183

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND  GH  GD+++  ++  L         V RLGG+EFA     ++  +A I+   +R
Sbjct: 184 QVNDTLGHRTGDRLLKQIARTLCQSVREMDAVARLGGDEFALLLPNANRDQAEIVIKRVR 243

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRV 255
             + ++     S  +  +T S G+A   +  P      +++ ADQ +Y  K + ++ V
Sbjct: 244 ARLSDAM----STENWPVTFSIGVA--VYHNPDADADALLHGADQLMYDVKHNAKDGV 295


>gi|114320957|ref|YP_742640.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227351|gb|ABI57150.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 291

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 84/179 (46%), Gaps = 24/179 (13%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFG 147
           + + +     R D L+GL N  A   +L         +   LS++  D+D FK IND  G
Sbjct: 120 VRFQQAEAAGRKDSLTGLQNRQALAEALAREVSLAHRHGHPLSLMVVDLDRFKAINDTHG 179

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF--------AAAALGSSEQEAAILANDL 199
           H VGD  +  L+  L         V R  G+EF        AA A+ S ++  A +A + 
Sbjct: 180 HRVGDTALCRLAALLQENCRGGDLVFRYAGDEFVVLMAHTAAAGAVRSGQRLLARMAQET 239

Query: 200 RKIIE-NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             I E + Q+N+ +        SAG+AE   +E    + +RAD AL  AK+ GR R+VC
Sbjct: 240 LAIGESDDQLNLRA--------SAGVAELEPEEAGEGLFHRADMALLRAKRYGRERLVC 290


>gi|332305841|ref|YP_004433692.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173170|gb|AEE22424.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 338

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 81/172 (47%), Gaps = 13/172 (7%)

Query: 98  NRISQLSRI-DCLSGLLN-----HSAFISSLGSYNEKLS-IVFFDIDYFKQINDNFGHPV 150
           NR  +L  + D L+GL N     H+       + NE+   ++  DID+FK+INDNFGH  
Sbjct: 171 NRQLRLKTVKDDLTGLFNRAILDHNTIEQINLARNERSDYLLLIDIDHFKKINDNFGHST 230

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ--I 208
           GD+++  L D L           R GGEEF           A  +AN +R   E ++  +
Sbjct: 231 GDEILVILGDILNASMRDSDLAIRWGGEEFLVILQRCPSVHAQKIANQIRIEFEQNERIL 290

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +   P+   T+S G A           +  AD  LY AK  GRNRVV FSD
Sbjct: 291 QLLQRPA---TLSIGTAATSQNLMFDKALSLADSRLYKAKSQGRNRVV-FSD 338


>gi|332535743|ref|ZP_08411489.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034851|gb|EGI71383.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 967

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 15/169 (8%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           S  ++ QL+  D L+GL N + F         ++  G Y    ++ +FD+D FK+IND  
Sbjct: 525 SQRKMEQLAYFDTLTGLANRTFFRMQLRKSMALAERGHY--AFALFYFDLDEFKRINDTL 582

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN 205
           GH  GD+++  ++++L         + RLGG+EFA    G  S+  AA +AN ++K + N
Sbjct: 583 GHDAGDQLLIEVANRLKKRLRAEDTIARLGGDEFAVLLSGIESQSHAADVANTIQKTL-N 641

Query: 206 SQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253
             I + S   I ++ S GI    +       ++  AD A+Y AK  GRN
Sbjct: 642 VPIKLGSNEVI-VSASIGITMAPYDSLEEDQLLKHADLAMYEAKAKGRN 689


>gi|325922053|ref|ZP_08183851.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
            gardneri ATCC 19865]
 gi|325547463|gb|EGD18519.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
            gardneri ATCC 19865]
          Length = 1025

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 1/122 (0%)

Query: 135  DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
            DID+FK+IND +GH VGD V++ + + L        F  R GGEEF  AA+G    +A  
Sbjct: 903  DIDHFKRINDAYGHEVGDAVLSAIGEALSEHDQAQCFAARHGGEEFLLAAIGLDAAQART 962

Query: 195  LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            L   +R+ +    ++ + G ++  T S G+A          ++  AD+ LY AK+ GR+R
Sbjct: 963  LFERMRQRLATIDVD-AQGTTVRCTASMGMAMSDEAPSRRELLALADRRLYQAKRQGRDR 1021

Query: 255  VV 256
            +V
Sbjct: 1022 LV 1023


>gi|313108693|ref|ZP_07794689.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|310881191|gb|EFQ39785.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 381

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 22/178 (12%)

Query: 100 ISQLSRI----DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
           IS+L R+    D L+GL N  +F   L           + L+++  D+D+FK  ND +GH
Sbjct: 206 ISRLLRVMADHDSLTGLHNRRSFNQHLDRLWRQAQREQKTLALLLCDVDHFKAYNDRYGH 265

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
             GD V+  +          P+ +  RLGGEEFA    G++E EA + A  LR  ++  +
Sbjct: 266 QAGDAVLQRIGAVFEANARRPLDMAVRLGGEEFALLLYGANEHEARLRAEALRAQVQALR 325

Query: 208 I-NISSGPSIHITISAGIAERCHKEPISTIIYR-------ADQALYVAKKSGRNRVVC 257
           + + +S  +  +T+S G++  C        + R       AD+ALY AK  GRN+VV 
Sbjct: 326 MEHEASDTAREVTLSVGVS--CLWPTPGNDLKRLYDLYEHADRALYEAKAFGRNQVVA 381


>gi|260768516|ref|ZP_05877450.1| GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260616546|gb|EEX41731.1| GGDEF family protein [Vibrio furnissii CIP 102972]
          Length = 505

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 105/212 (49%), Gaps = 29/212 (13%)

Query: 65  LVENLSLVIISIT-----ISLLLGYISGSILKELFISYNRISQLSRI-------DCLSGL 112
           L +N   V+I +      ISLLLG++S  +++E      ++ + ++        D L+G+
Sbjct: 298 LTQNDQWVLIGLGAGGTIISLLLGFVSYLLMREKETLNLKLEERTKELRFMVEHDSLTGI 357

Query: 113 LNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GT 168
            N  AF   L  Y   ++  ++V FDID FK IND + H  GD+++  ++  +  V  G 
Sbjct: 358 FNRRAFNRILDVYMRDDKVFTLVSFDIDNFKSINDRYSHLAGDQILVAVTKTIEKVLEGN 417

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-----ISSGPSIHITISAG 223
            +FV R GG+EF+     +  +        +R+ +E SQ +     IS   SI   ++ G
Sbjct: 418 DIFV-RTGGDEFSILCHVTEREPLMRYLEKIRRTVEQSQFDTGYQLISVSLSIGAAVNHG 476

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +E+        ++ RAD  LY +K  GRN+V
Sbjct: 477 YSEQ-------ELLQRADTMLYESKAKGRNQV 501


>gi|289804386|ref|ZP_06535015.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 126

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 73/134 (54%), Gaps = 17/134 (12%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID+FK IND +GH  GD+ I  L+ QL +       +GR GG+EFA    G+  
Sbjct: 2   TLLIIDIDHFKSINDTWGHDAGDEAIIALTRQLQITLRGSDIIGRFGGDEFAVIMCGTPA 61

Query: 190 QEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--YR-----AD 241
            ++AI A  + ++ E  + + +   P + + IS G+A      P++  I  YR     AD
Sbjct: 62  -DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGHYREWLKSAD 112

Query: 242 QALYVAKKSGRNRV 255
            ALY AK +GRNR 
Sbjct: 113 MALYKAKNAGRNRT 126


>gi|168235844|ref|ZP_02660902.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194734043|ref|YP_002114731.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194709545|gb|ACF88766.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197290976|gb|EDY30329.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 660

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 390

Query: 257 CFS 259
            FS
Sbjct: 391 VFS 393


>gi|157376803|ref|YP_001475403.1| putative signaling protein [Shewanella sediminis HAW-EB3]
 gi|157319177|gb|ABV38275.1| conserved hypothetical signaling protein [Shewanella sediminis
           HAW-EB3]
          Length = 480

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 10/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L  +  +++ LS  D L+GL N   F   L           + L++   DID+FK+ ND 
Sbjct: 305 LETANQKLAALSLTDELTGLGNRRHFNEKLEQEWIRASRTKQPLALGMIDIDFFKKYNDK 364

Query: 146 FGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH +GD+ +  +S  L  ++        R GGEEFA  A  + E+ A  +A   ++ + 
Sbjct: 365 YGHVLGDECLQEISKLLASIISRAGDLSARYGGEEFAFIAPATDEEGARDIAEKFQEALH 424

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTI--IYRADQALYVAKKSGRNRVV 256
           +  +         +T S GIA R   +   +I  I  AD+ALY+AK+ GRNRVV
Sbjct: 425 SLTLPHVESEFGFVTASIGIAVRTPTKGEESICLIKIADEALYLAKEQGRNRVV 478


>gi|254242030|ref|ZP_04935352.1| hypothetical protein PA2G_02756 [Pseudomonas aeruginosa 2192]
 gi|126195408|gb|EAZ59471.1| hypothetical protein PA2G_02756 [Pseudomonas aeruginosa 2192]
          Length = 389

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 22/178 (12%)

Query: 100 ISQLSRI----DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
           IS+L R+    D L+GL N  +F   L           + L+++  D+D+FK  ND +GH
Sbjct: 214 ISRLLRVMADHDSLTGLHNRRSFNQHLDRLWRQAQREQKTLALLLCDVDHFKAYNDRYGH 273

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
             GD V+  +          P+ +  RLGGEEFA    G++E EA + A  LR  ++  +
Sbjct: 274 QAGDAVLQRIGAVFEANARRPLDMAVRLGGEEFALLLYGANEHEARLRAEALRAQVQALR 333

Query: 208 I-NISSGPSIHITISAGIAERCHKEPISTIIYR-------ADQALYVAKKSGRNRVVC 257
           + + +S  +  +T+S G++  C        + R       AD+ALY AK  GRN+VV 
Sbjct: 334 MEHEASDTAREVTLSVGVS--CLWPTPGNDLKRLYDLYEHADRALYEAKAFGRNQVVA 389


>gi|33603636|ref|NP_891196.1| hypothetical protein BB4664 [Bordetella bronchiseptica RB50]
 gi|33577761|emb|CAE35026.1| putative membrane protein [Bordetella bronchiseptica RB50]
          Length = 380

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 107/226 (47%), Gaps = 28/226 (12%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI-------- 100
            +  + L P   L +   E+ SL I+S+ + L L  ++ +  +     +NR+        
Sbjct: 158 LMICVSLGPCTTLPWFTGEH-SLWIVSVQLPLYLASMTVAAYR-----FNRMLVATMQAE 211

Query: 101 ---SQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
               +L+R D L+GLLN          A  ++    NE  ++++ D+D FK +ND  GH 
Sbjct: 212 RDSDRLARCDALTGLLNRFGLGFALERAVAATRRDGNE-FALLYLDLDGFKSVNDTHGHA 270

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQI 208
            GD+++  ++ +L  +      + R+GG+EF        E  A  L + +  +I E   +
Sbjct: 271 AGDRLLRDVAARLTELAPADAAIARIGGDEFVLLVRDCDEACATALGDRIVARICEPYDL 330

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
                  I  ++   +  R H + ++ I+  AD+ALY+AK +G++R
Sbjct: 331 GTPRPVRIGGSVGIALVPR-HGQEMTAILKAADRALYLAKSAGKSR 375


>gi|127512396|ref|YP_001093593.1| diguanylate cyclase [Shewanella loihica PV-4]
 gi|126637691|gb|ABO23334.1| diguanylate cyclase [Shewanella loihica PV-4]
          Length = 722

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 10/169 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151
           ++  L+  D L+ L N     +  G+ ++        L+    DID+FK+IND +GH +G
Sbjct: 544 KLQALAERDELTQLYNRRYVENHFGNIHDMCKRSYAALAFCIIDIDHFKKINDTYGHQIG 603

Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D  +  L++ +   F      V R GGEEF       +  +     N  ++++   QI +
Sbjct: 604 DSALIALAELMKQFFKRDTDIVSRYGGEEFLVVLPQCNALQVEQHLNQFKELVAEHQIEV 663

Query: 211 SSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               +I +T+S G  I+   +   I      AD  LY AK++GRNRV+C
Sbjct: 664 PGQAAISLTVSIGAVISNAGYMNDIDHWFKMADLNLYEAKENGRNRVIC 712


>gi|315181945|gb|ADT88858.1| sensory box/GGDEF domain/EAL domain protein [Vibrio furnissii NCTC
           11218]
          Length = 315

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 10/167 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQINDNFGHPVGDKV 154
           +S+L+R D L+ LLN  A  S     N   S     +VF DID FK +ND+ GH  GD V
Sbjct: 151 LSRLARQDPLTNLLNRKALHSEFNRINHAKSDSLAAMVFIDIDNFKTVNDHLGHKAGDAV 210

Query: 155 IAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  +++ L   F  P  V  RLGG+EF         Q    L + L   + +  + + +G
Sbjct: 211 LVVVAEWL-KQFAPPQSVIARLGGDEFVLLCEQEETQALNTLTDQLLTQVADPVV-LENG 268

Query: 214 PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +  I +S G+ E    +    T+  RAD+A+Y  K+SG+N V   S
Sbjct: 269 KA-QIGLSIGVCEFAPGQHEFDTLYERADEAMYQVKRSGKNGVRWVS 314


>gi|294341431|emb|CAZ89848.1| conserved hypothetical protein; putative PAS/PAC, EAL, GGDEF
           domains [Thiomonas sp. 3As]
          Length = 681

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 10/164 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151
           R+   +R D L+  LN    +  LG  +          S +  D+D+FK++ND  GH  G
Sbjct: 260 RLHHQARHDALTQALNRVGMLDELGRTHAGFLRTGATFSNILLDLDHFKRVNDQHGHAAG 319

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+ +  ++  +         + R GGEEF      +S ++A  +A  +R  ++  ++   
Sbjct: 320 DEALRLVARAIQGALRADDHLARWGGEEFLCLLPHTSLEQAIAIAERIRAEVQALELKQG 379

Query: 212 SGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRN 253
             P I +TISAG+  A     + +  ++ RAD +LY AK++GRN
Sbjct: 380 RQP-IPLTISAGVSAASPDRGDTLEQMLQRADFSLYEAKQAGRN 422


>gi|261820654|ref|YP_003258760.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
 gi|261604667|gb|ACX87153.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
          Length = 515

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 92/191 (48%), Gaps = 20/191 (10%)

Query: 81  LLGYISGSILKELFISYNRISQ-LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132
           L   I  +I+++   S N   Q L+  D L+GL N   F       +S +    ++++++
Sbjct: 323 LKNQIDLTIVRDELTSVNHTLQTLALFDGLTGLANRRQFDIFLQQTLSRVAGTQQRMALI 382

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSS 188
             DID FK+ ND++GH  GD+ +  +     V+   P      V R GGEEFA     + 
Sbjct: 383 MIDIDAFKKYNDHYGHVAGDECLRKIGH---VLSNMPKRKEDLVARYGGEEFAIIITDTD 439

Query: 189 EQEAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPI---STIIYRADQA 243
           +Q    LA  +   +   +I   ++  P   +TISAG    C   P+   ++II  AD A
Sbjct: 440 KQGVITLAQRVLDAVREEKIPHEMTLFPEKIVTISAGAYVFCVDNPLPAATSIIDIADAA 499

Query: 244 LYVAKKSGRNR 254
           LY AK  G+NR
Sbjct: 500 LYRAKNGGKNR 510


>gi|210610102|ref|ZP_03288264.1| hypothetical protein CLONEX_00450 [Clostridium nexile DSM 1787]
 gi|210152614|gb|EEA83620.1| hypothetical protein CLONEX_00450 [Clostridium nexile DSM 1787]
          Length = 779

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 19/177 (10%)

Query: 99  RISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ + +  D L+GL N +        F+ SL +       +  D+D FKQIND FGH  G
Sbjct: 599 RLKERAERDGLTGLYNATTMKMKADNFLQSLWALEGNHIFMLMDLDCFKQINDTFGHQYG 658

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-----EQEAAILANDLRKIIENS 206
           D+V+  +S  L   F     +GR+GG+EFA   L  S     E     L  +L K  E  
Sbjct: 659 DQVLKDVSQTLTKTFRHNDLIGRMGGDEFAIMILNVSDFSVIEHTVQQLLKELHKSYE-- 716

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
                +G ++ ++ S GI     H      +  ++DQ LY  K+S +N    + + E
Sbjct: 717 ----QNGKTVEVSASLGIVTAPEHGTTFEELYQKSDQMLYEVKRSVKNGYRLYQEKE 769


>gi|194292502|ref|YP_002008409.1| response regulator receiver, diguanylate cyclase (ggdef domain)
           [Cupriavidus taiwanensis LMG 19424]
 gi|193226406|emb|CAQ72355.1| Response regulator receiver, putative diguanylate cyclase (GGDEF
           domain) [Cupriavidus taiwanensis LMG 19424]
          Length = 346

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 89/181 (49%), Gaps = 19/181 (10%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+GL N   F   LG+          +++++  D+D FK  N
Sbjct: 166 QQLLETNLELQRLTNSDGLTGLSNRRYFDEYLGAEWRRALREQTQVALLMIDVDAFKAYN 225

Query: 144 DNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           D +GH  GD    +V   + D  V     P    R GGEEFA     +S     +LA  +
Sbjct: 226 DTYGHVAGDDVLRRVATVIRDNCVRATDLP---ARFGGEEFAMVLPATSPGGVRLLAEKV 282

Query: 200 RKIIENSQINISSGPSIH-ITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           R+ ++   I  S  P++  +T+S G A    R   +P S ++  AD  LY AK++GRN+V
Sbjct: 283 RRAVQGLAIAHSGSPTLDCVTVSIGGAVMVPRPGAQP-SQLVEAADAGLYQAKRNGRNQV 341

Query: 256 V 256
           +
Sbjct: 342 M 342


>gi|165927306|ref|ZP_02223138.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|166009086|ref|ZP_02229984.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|165920768|gb|EDR38016.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992425|gb|EDR44726.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Antiqua str. E1979001]
          Length = 338

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 116/242 (47%), Gaps = 21/242 (8%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLL---LGYI-- 85
            F+IF  + I +++ FL +   T    +  IL++   N+  +I +I + L+   L ++  
Sbjct: 84  LFTIFFISTIALSDNFLAFCLHTAPSAITVILLDDFHNIFRIIFTIMLPLIGFSLHHLML 143

Query: 86  ------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFD 135
                 +  ++  L     + S LS ID L+ L N     S L +   +      ++  D
Sbjct: 144 RRTDNFTRKLVDHLSNEREKFSDLSMIDPLTSLYNRRGLESKLETLLSQSPGNHYVLLLD 203

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK  NDN+GH +GD+ +  +S  +     +   V R GGEEF       SE+ A  L
Sbjct: 204 IDHFKAYNDNYGHTMGDQALVRISAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYANQL 263

Query: 196 ANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           A  +R+ +    I    +   S  +T+SAGI+       ++  +  AD+ALY AK++GRN
Sbjct: 264 AERVRQRVLGLDIPHVFNHKVSTTVTLSAGISP-LQAYDLAASLKAADEALYRAKRNGRN 322

Query: 254 RV 255
            +
Sbjct: 323 NI 324


>gi|117619402|ref|YP_857175.1| GGDEF domain-containing protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560809|gb|ABK37757.1| GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 527

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 86/164 (52%), Gaps = 8/164 (4%)

Query: 91  KELFISYNR---ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQIND 144
           +E+ +   R   I QL+R D L+GL N  + +  L +  +  +   ++F D+D FKQ+ND
Sbjct: 357 REIALRRQREEEIWQLARRDPLTGLPNRLSLMERLDAQVKGPAPGCLLFCDLDDFKQVND 416

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           NFGH  GD ++  L++++    G   F  RL G+EF     G  + +A  +A  +R +++
Sbjct: 417 NFGHSHGDALLCQLAERISRSLGPQHFFARLAGDEFVLLLPGHDQAQADAIAEQIRAVMQ 476

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
            S   +   P + + IS GI++          + +AD+A+Y  K
Sbjct: 477 -SPFEVEGVP-LTVGISVGISQYQPGWRAEQWLIQADRAMYHDK 518


>gi|160877024|ref|YP_001556340.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160862546|gb|ABX51080.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|315269227|gb|ADT96080.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica OS678]
          Length = 328

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 84/170 (49%), Gaps = 9/170 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +L  +  ++ +LS+ D L+ L N   +   L         Y+   S+V  DID FK IND
Sbjct: 144 QLKAANEQLERLSQTDGLTQLHNRRHWQECLDHEYDIYARYSGMASLVMIDIDNFKHIND 203

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           ++GH  GDKVI  ++  L          GR GGEEFA     +S  +A      LR+ I 
Sbjct: 204 SYGHVAGDKVIQHIAHLLSQSLRETDCAGRYGGEEFAVVLPKTSGADAMYFTERLREKIA 263

Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
            S I +     I +T+S G+ E   H    S+ I  +D+ALY AK+ GRN
Sbjct: 264 ASVI-LYESLKISVTVSLGVCEIGSHITSSSSWISCSDKALYEAKQKGRN 312


>gi|307721371|ref|YP_003892511.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
 gi|306979464|gb|ADN09499.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
          Length = 425

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 3/133 (2%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           N+K++I   DID FK +ND +GH  GD V+  L  +   V  +  ++ R GGEEF     
Sbjct: 285 NKKMTISMIDIDDFKYVNDTYGHQCGDAVLKHLVAKCKSVLRSTDYIFRYGGEEFIILLN 344

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQA 243
            ++   A  +   LR+ +ENS I   +G  I ITIS GI   +   K  I+ II +ADQ 
Sbjct: 345 AANFTNAVEIYEKLRQKVENSYIE-CNGNKISITISIGIESVDSSKKINIAKIIKQADQH 403

Query: 244 LYVAKKSGRNRVV 256
           LY AK +G+N ++
Sbjct: 404 LYTAKNNGKNMII 416


>gi|163782883|ref|ZP_02177879.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882004|gb|EDP75512.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 711

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 8/164 (4%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L    E+        +++  D+D FK IND +GH  GDK +   +
Sbjct: 301 DPLTGLYNQRVFWELLEYEIERAQRRGYSFAVLMIDLDNFKVINDTYGHDFGDKFLREFA 360

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +   F     V R GG+EF      +SE+EA   A    + ++N  +    G  I  T
Sbjct: 361 KLMRKTFRREDIVARYGGDEFVVILPYASEEEALRSARRFIEELDNFYVEAPDGKPIKAT 420

Query: 220 ISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +S GIA    H E    +   AD  +Y AK  G++RV+  +D +
Sbjct: 421 VSIGIALYPQHGESTQELFLTADNIMYRAKAEGKSRVMLPTDTD 464


>gi|126172780|ref|YP_001048929.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|217974887|ref|YP_002359638.1| diguanylate cyclase [Shewanella baltica OS223]
 gi|304410888|ref|ZP_07392505.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|307304941|ref|ZP_07584691.1| diguanylate cyclase [Shewanella baltica BA175]
 gi|125995985|gb|ABN60060.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|217500022|gb|ACK48215.1| diguanylate cyclase [Shewanella baltica OS223]
 gi|304350785|gb|EFM15186.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|306912343|gb|EFN42767.1| diguanylate cyclase [Shewanella baltica BA175]
          Length = 328

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 84/170 (49%), Gaps = 9/170 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +L  +  ++ +LS+ D L+ L N   +   L         Y+   S+V  DID FK IND
Sbjct: 144 QLKAANEQLERLSQTDGLTQLHNRRHWQECLDHEYDIYARYSGMASLVMIDIDNFKHIND 203

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           ++GH  GDKVI  ++  L          GR GGEEFA     +S  +A      LR+ I 
Sbjct: 204 SYGHVAGDKVIQHIAHLLSQSLRETDCAGRYGGEEFAVVLPKTSGADAMYFTERLREKIA 263

Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
            S I +     I +T+S G+ E   H    S+ I  +D+ALY AK+ GRN
Sbjct: 264 ASVI-LYESLKISVTVSLGVCEIGSHITSSSSWISCSDKALYEAKQKGRN 312


>gi|326627689|gb|EGE34032.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 663

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSDSLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFS 259
            FS
Sbjct: 394 VFS 396


>gi|323212725|gb|EFZ97540.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
          Length = 524

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 80  AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 139

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 140 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 199

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 200 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 254

Query: 257 CFS 259
            FS
Sbjct: 255 VFS 257


>gi|320637245|gb|EFX07071.1| hypothetical protein ECO5101_20565 [Escherichia coli O157:H7 str.
           G5101]
          Length = 430

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 75/158 (47%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+           +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPSQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P    T
Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|319784352|ref|YP_004143828.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170240|gb|ADV13778.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 262

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 28/235 (11%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL-------K 91
           + T  FIA  F       P+   E +    ++     + + L+LG   GS L       +
Sbjct: 19  VGTAFFIAVAFFVDSFNFPYLSPEAVWRAQMT----DLMLPLVLG---GSFLFFLMWKIR 71

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---------SIVFFDIDYFKQI 142
           +L I+   +S ++  D L+ +LN  AF   + +Y E+          +++  D D+FK I
Sbjct: 72  QLAIAQRDLSVIAATDSLTAVLNRGAFSMLVEAYLEQTRKQEQTRSGALLIIDADHFKSI 131

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD+ +  ++  +         VGR+GGEEF     G    ++ ++A  +R+ 
Sbjct: 132 NDRLGHDCGDQALKLIAQAIKGQLRGSDIVGRIGGEEFGVFLPGVDPSQSWVVAESIRRR 191

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
           I   + +    P     +S  I       PI+   I   AD+ LY AK +GR++V
Sbjct: 192 IREMEFSPGGRP---CPLSVSIGGTSFTGPITYEEIFSAADRRLYTAKSNGRDQV 243


>gi|315125666|ref|YP_004067669.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas sp. SM9913]
 gi|315014180|gb|ADT67518.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas sp. SM9913]
          Length = 564

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 83/173 (47%), Gaps = 8/173 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           +ELF     + + + +D L+G LN       L          N  +S++  DID+FK IN
Sbjct: 392 QELFTLNKELEKQANVDPLTGCLNRRTLYRFLTDELLKTQDGNTYISLLMLDIDHFKAIN 451

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           DN+GH  GDK +  L++ L  +      V RLGGEEF      +++ EA   A  ++  +
Sbjct: 452 DNYGHEAGDKGLKELANILHGLTRKNDAVFRLGGEEFLIIMPNTNKAEAKQAAERIKNAV 511

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              ++      +I  T+S G+        + + +   D  LY AK SGRN++V
Sbjct: 512 NEHKV-YYRNKNISFTVSIGLLTHDGTISLQSSLKYVDDYLYEAKNSGRNKIV 563


>gi|239993375|ref|ZP_04713899.1| diguanylate cyclase [Alteromonas macleodii ATCC 27126]
          Length = 358

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 129/279 (46%), Gaps = 36/279 (12%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIF----IANI-----FLFYIG 54
           S  ++  IW+C E++   F P+   I ++ FF +F   + F     AN+     FL  + 
Sbjct: 82  SYSNYWLIWVCWEEHSFIF-PYEGTILYA-FFCVFALGIAFKLALAANVINILGFLGLMW 139

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           + P YG    +  +++ V  S+ I +   Y     ++ L  + +R+ +LS+ D LS LLN
Sbjct: 140 VAPVYGDRVPI--SMAFVSGSLFICVYARYRLDRSVRMLKETNDRLLKLSKFDPLSDLLN 197

Query: 115 HSAFISSLGSYNEKL-----------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
             A    L   +EKL           +++  D+D FK+ ND FGH  GD+ I   +  + 
Sbjct: 198 RRA----LREQSEKLLALSKRHKVSMAVMMLDLDDFKKYNDCFGHQQGDEAIKIQARIMK 253

Query: 164 VVFGTPM-FVGRLGGEEFAAAALGSSEQEA-----AILANDLRKIIENSQINISSGPSIH 217
            VF      +GR GGEEF        +++      A+L       +E++Q   +  P + 
Sbjct: 254 QVFKRETDILGRYGGEEFIVVLSDIQKEQVEKHCDALLNKWTEAALEHAQ--DAKHPLMS 311

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +I    A+      I  +I  AD+ALY AK+ G+ + V
Sbjct: 312 CSIGVVFAKSAENMSIDCLIDEADKALYEAKEKGKAQFV 350


>gi|207856783|ref|YP_002243434.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|206708586|emb|CAR32907.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 660

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSDSLIRTADTAMYNAKEGGRGQFC 390

Query: 257 CFS 259
            FS
Sbjct: 391 VFS 393


>gi|197265009|ref|ZP_03165083.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|205358003|ref|ZP_03223901.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|197243264|gb|EDY25884.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|205328272|gb|EDZ15036.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|321224330|gb|EFX49393.1| hypothetical protein SEE_02786 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323129972|gb|ADX17402.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 663

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFS 259
            FS
Sbjct: 394 VFS 396


>gi|16765047|ref|NP_460662.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16420232|gb|AAL20621.1| putative PAS/PAC domain protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|261246894|emb|CBG24711.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267993641|gb|ACY88526.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158230|emb|CBW17729.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912693|dbj|BAJ36667.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|332988590|gb|AEF07573.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 660

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 390

Query: 257 CFS 259
            FS
Sbjct: 391 VFS 393


>gi|115523502|ref|YP_780413.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
 gi|115517449|gb|ABJ05433.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Rhodopseudomonas palustris BisA53]
          Length = 830

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 57/200 (28%), Positives = 100/200 (50%), Gaps = 26/200 (13%)

Query: 72  VIISITISLLLGYISGSILKELFISYNR----ISQLSRIDCLSGLLNHSAF-------IS 120
           ++ S+  +L L +++ S L+E      R    ++QL+ +D ++G+ N ++F        +
Sbjct: 349 MLASLKRTLKLEFLTAS-LRETGDQLQRESALVAQLASLDSMTGIANRASFHARLAAAFA 407

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           +    +   +++  D+D+FK +ND  GHP+GD+++   + +L  V      + RLGG+EF
Sbjct: 408 AAQRADGHFAVLCLDLDHFKDVNDTLGHPIGDRLLQIAAQRLTRVVSHDDVIARLGGDEF 467

Query: 181 AAAALGSSEQE-----AAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPI 233
           A       ++E     A  +AN L +  E        G  + +T S GI+        P 
Sbjct: 468 ALLIFDVCDREVIAGIATRIANALNESYE------LDGNIVRVTASIGISVFGPAAASPE 521

Query: 234 STIIYRADQALYVAKKSGRN 253
             +I+ ADQALY AK  GRN
Sbjct: 522 DMMIH-ADQALYRAKADGRN 540


>gi|313202429|ref|YP_004041087.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688]
 gi|312441745|gb|ADQ85851.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688]
          Length = 771

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 17/231 (7%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIIS-ITISLLLGYISGSILKELFIS 96
            +A +I I+ I+   +  T        L   LS++ ++ +  S+LL      +  E  I 
Sbjct: 265 LMAMLIAISTIYFMMMDTTTPIAKSIALGSCLSIIALAMVRQSILLAESERLLTAEQLIE 324

Query: 97  YN--RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
               R   L+  D L+GL N   F   L          N ++ ++F DID+FK IND+ G
Sbjct: 325 EGQMRYQHLAHHDILTGLPNRLLFQDRLTHALALSARNNNRVGMLFIDIDHFKNINDSLG 384

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIEN 205
           H +GD+++  + ++L +         RLGG+EF      L ++ + A I +N L  +   
Sbjct: 385 HVIGDELLVAIVERLKLRIREQDTFARLGGDEFVLLIEQLQNASEAATIASNLLEAL--K 442

Query: 206 SQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254
           +  ++S    + I+ S GI+  C +  +  + +I  AD A+Y AK +GRNR
Sbjct: 443 TPFHLSGNCEVVISASIGISV-CPEDTQDATQLIRNADSAMYRAKDTGRNR 492


>gi|304385737|ref|ZP_07368081.1| signal transduction diguanylate cyclase [Pediococcus acidilactici
           DSM 20284]
 gi|304328241|gb|EFL95463.1| signal transduction diguanylate cyclase [Pediococcus acidilactici
           DSM 20284]
          Length = 400

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 13/214 (6%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF- 118
           G+  + V  + L+     + + + +     ++ +   Y ++ + +  D L+G+ N   F 
Sbjct: 184 GIRTMTVSQVLLLTFEFMMMMTIVHFGNIEIRAMVKRYMKLEKDNGYDFLTGVRNRRTFN 243

Query: 119 -----ISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFL----SDQLVVVFGT 168
                +  + S N+  +++V FDID+FK  ND +GH VGD V+ ++    SD+L     T
Sbjct: 244 EVVNEVFEVYSNNDLPVAMVMFDIDHFKLFNDQYGHQVGDNVLKYVAQLFSDELFER-KT 302

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
              + R+GGEEF       +  EAA +   +R I+      +    ++ +T+S G+ +  
Sbjct: 303 NAQLFRVGGEEFTIIFRNRTSAEAAPIVKTIRDILVEKTFEVKDDLNVRVTVSIGVTDLK 362

Query: 229 HKEPISTIIY-RADQALYVAKKSGRNRVVCFSDI 261
             +  +   Y R D+ LY AK + RN +    D+
Sbjct: 363 KSDQSAKDFYKRVDKYLYQAKNNFRNSMSVEGDV 396


>gi|194471677|ref|ZP_03077661.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205358293|ref|ZP_03223993.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194458041|gb|EDX46880.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205335392|gb|EDZ22156.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 663

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFS 259
            FS
Sbjct: 394 VFS 396


>gi|120611687|ref|YP_971365.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
 gi|120590151|gb|ABM33591.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
          Length = 260

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 9/165 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +LS  D L+GL N   F       I  +    E   ++  DID FK++ND  GH  GD
Sbjct: 54  LCELSLKDPLTGLANRRHFRTVLEREIDRVTRAGEAALLLMLDIDNFKRVNDTHGHMAGD 113

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L         + R GGEEFA            ++A  +R+ +E + + IS 
Sbjct: 114 IVLQSIARTLSRCVRPMDTLSRYGGEEFAVVLPACQAGFGKVVAERIRRAVERTPVRISP 173

Query: 213 GPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRV 255
              +++T+S G A        +T+++  RAD  LY AK +GRNRV
Sbjct: 174 TVELNVTVSIGGAFALQWIRSTTLLWTERADSQLYKAKLAGRNRV 218


>gi|170733262|ref|YP_001765209.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3]
 gi|169816504|gb|ACA91087.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3]
          Length = 466

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 9/177 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S L+EL  +  ++  ++  D ++G  N   FI+ +               ++  D+D FK
Sbjct: 289 SALQELRRTNQKLEYMAATDPMTGASNRRQFIAQVEREIVRAERDGTPFCLLALDLDNFK 348

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH +GD+V+  +  Q +        + R+GGEEF A       + A + A  +R
Sbjct: 349 NINDAYGHQIGDEVLRGVVRQCLEAIRPAGALARVGGEEFMALLPEMPLEGARMTAERVR 408

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I +S   +     + +T+S G+A+       +  ++   D+ LY AK+ GRNRVV
Sbjct: 409 SSISSSPFGLDF-KRVQVTVSVGVAQYGVDGSTVDALLRVVDERLYQAKREGRNRVV 464


>gi|117927307|ref|YP_871858.1| diguanylate cyclase [Acidothermus cellulolyticus 11B]
 gi|117647770|gb|ABK51872.1| diguanylate cyclase [Acidothermus cellulolyticus 11B]
          Length = 555

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 6/170 (3%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           EL     R+   +  D L+GL N  A    + +L   +   S++F D+D FK  ND+F H
Sbjct: 387 ELAAENERVEHEALRDALTGLANRRALDMALEALAKSDTVSSLLFVDLDDFKTTNDSFSH 446

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQ 207
            VGD+V+  ++  L         V R GG+EF     G+  +    +   +R  ++  S 
Sbjct: 447 TVGDEVLRSIAAILRGECREDDVVARFGGDEFVLVLHGAPRKTGIRVGERIRSAVKAFSW 506

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             I+  P + +++S G+AE      +S  +  AD ALY AK+ GR+RV  
Sbjct: 507 EKIA--PDLRVSVSIGVAEFQPGMDLSEALLTADSALYAAKQQGRDRVAA 554


>gi|115351942|ref|YP_773781.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
 gi|115281930|gb|ABI87447.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
          Length = 466

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S L+EL  +  ++  ++  D ++G  N   FI  +               ++  D+D FK
Sbjct: 289 SALQELRRTNQKLEYMAATDPMTGASNRRQFIGQVEREIVRAERDGTPFCLLALDLDNFK 348

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH +GD+V+  +  Q +        + R+GGEEF A       + A + A  +R
Sbjct: 349 NINDAYGHQIGDEVLRGVVRQCLEAIRPAGALARVGGEEFMALLPEMPLEGARMTAERVR 408

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             I +S   +     + +T+S G+A+       +  ++   D+ LY AK+ GRNRVV 
Sbjct: 409 SSIASSPFGLDF-KRVQVTVSVGVAQYGVDGSTVDALLRAVDERLYQAKRDGRNRVVA 465


>gi|22127627|ref|NP_671050.1| HmsT protein [Yersinia pestis KIM 10]
 gi|108809850|ref|YP_653766.1| HmsT protein [Yersinia pestis Antiqua]
 gi|108810461|ref|YP_646228.1| HmsT protein [Yersinia pestis Nepal516]
 gi|150260535|ref|ZP_01917263.1| predicted diguanylate cyclase [Yersinia pestis CA88-4125]
 gi|165936531|ref|ZP_02225099.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166212091|ref|ZP_02238126.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167400664|ref|ZP_02306173.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167418700|ref|ZP_02310453.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426093|ref|ZP_02317846.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467770|ref|ZP_02332474.1| HmsT protein [Yersinia pestis FV-1]
 gi|218927626|ref|YP_002345501.1| HmsT protein [Yersinia pestis CO92]
 gi|229840307|ref|ZP_04460466.1| predicted diguanylate cyclase [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842386|ref|ZP_04462541.1| predicted diguanylate cyclase [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229900648|ref|ZP_04515772.1| predicted diguanylate cyclase [Yersinia pestis Nepal516]
 gi|270487991|ref|ZP_06205065.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis KIM
           D27]
 gi|294502523|ref|YP_003566585.1| HmsT protein [Yersinia pestis Z176003]
 gi|4583441|gb|AAD25088.1|AF129277_1 HmsT [Yersinia pestis]
 gi|5758037|gb|AAD50642.1|AF132982_1 HmsT [Yersinia pestis]
 gi|21960739|gb|AAM87301.1|AE013979_1 hemin storage system protein [Yersinia pestis KIM 10]
 gi|108774109|gb|ABG16628.1| HmsT protein [Yersinia pestis Nepal516]
 gi|108781763|gb|ABG15821.1| HmsT protein [Yersinia pestis Antiqua]
 gi|115346237|emb|CAL19106.1| HmsT protein [Yersinia pestis CO92]
 gi|149289943|gb|EDM40020.1| predicted  diguanylate cyclase [Yersinia pestis CA88-4125]
 gi|165915647|gb|EDR34256.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166206837|gb|EDR51317.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962694|gb|EDR58715.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050032|gb|EDR61440.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055016|gb|EDR64816.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229681987|gb|EEO78079.1| predicted  diguanylate cyclase [Yersinia pestis Nepal516]
 gi|229690696|gb|EEO82750.1| predicted  diguanylate cyclase [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696673|gb|EEO86720.1| predicted  diguanylate cyclase [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|262360553|gb|ACY57274.1| HmsT protein [Yersinia pestis D106004]
 gi|262364500|gb|ACY61057.1| HmsT protein [Yersinia pestis D182038]
 gi|270336495|gb|EFA47272.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis KIM
           D27]
 gi|294352982|gb|ADE63323.1| HmsT protein [Yersinia pestis Z176003]
 gi|320017013|gb|ADW00585.1| putative diguanylate cyclase [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 390

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 117/247 (47%), Gaps = 21/247 (8%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLL---LGYI-- 85
            F+IF  + I +++ FL +   T    +  IL++   N+  +I +I + L+   L ++  
Sbjct: 136 LFTIFFISTIALSDNFLAFCLHTAPSAITVILLDDFHNIFRIIFTIMLPLIGFSLHHLML 195

Query: 86  ------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFD 135
                 +  ++  L     + S LS ID L+ L N     S L +   +      ++  D
Sbjct: 196 RRTDNFTRKLVDHLSNEREKFSDLSMIDPLTSLYNRRGLESKLETLLSQSPGNHYVLLLD 255

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK  NDN+GH +GD+ +  +S  +     +   V R GGEEF       SE+ A  L
Sbjct: 256 IDHFKAYNDNYGHTMGDQALVRISAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYANQL 315

Query: 196 ANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           A  +R+ +    I    +   S  +T+SAGI+       ++  +  AD+ALY AK++GRN
Sbjct: 316 AERVRQRVLGLDIPHVFNHKVSTTVTLSAGISP-LQAYDLAASLKAADEALYRAKRNGRN 374

Query: 254 RVVCFSD 260
            +    D
Sbjct: 375 NIEFAKD 381


>gi|89092412|ref|ZP_01165366.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           withPAS/PAC sensor [Oceanospirillum sp. MED92]
 gi|89083500|gb|EAR62718.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           withPAS/PAC sensor [Oceanospirillum sp. MED92]
          Length = 1010

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 14/177 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL--GSYN-----EKLSIVFFDIDYFKQINDNFGHPV 150
            ++  ++  D L+GL N    I  L  G  N     + L++ + D+D FK IND +GH  
Sbjct: 562 KKLELIANFDPLTGLPNRRHIIELLHEGMANAMKQMKTLAVFYLDLDGFKDINDTYGHEY 621

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+++  L++++    G    VGR+GG+EF  A     E+  ++  + L  I+E     I
Sbjct: 622 GDQLLVTLANRMSKAMGQQDIVGRVGGDEFIGAFF---EEPNSVFTDKLHHILEQLAKPI 678

Query: 211 -SSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
              G  + ++ S G+    +        ++  ADQA+Y AK +G+NR   F D E +
Sbjct: 679 FVEGYKLQVSASIGVTLYPQQRSTDADKLVREADQAMYQAKLAGKNRYHFF-DAEKD 734


>gi|225849118|ref|YP_002729282.1| ggdef domain protein [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644419|gb|ACN99469.1| ggdef domain protein [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 826

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 101 SQLSRIDCLSGLLNHSA----FISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVG 151
            +LS  D L+ L N       F   +G      YN  + ++  D+D FK++ND +GH VG
Sbjct: 662 KELSLKDSLTNLYNRRYIIEFFTKEIGKAKRLDYN--IGVLVIDVDNFKKLNDTYGHLVG 719

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D  +  +S+  +        VGR GGEEF     GS E+    +A  +RK + +  I   
Sbjct: 720 DLCLKKVSNVFLNSVREMDIVGRWGGEEFIVILPGSDEESTYQIAERIRKKVSSEVIFTP 779

Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
               ++IT+S G+A      + +  +I  AD+ LY AKKSG+N
Sbjct: 780 DNKILNITVSIGMAVYPKDGDNLDDLIKVADEKLYQAKKSGKN 822


>gi|218439703|ref|YP_002378032.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218172431|gb|ACK71164.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 799

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 8/163 (4%)

Query: 106 IDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID ++GL + S  I  +           E    V  D+D+F+QIN+ +G+P+GD+V+  L
Sbjct: 627 IDSITGLASRSKSIHDISRMLRLAKRQGEHCCFVLLDVDHFQQINEQYGYPMGDEVLRRL 686

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
            + L   F     V R GGEEF       S +      ND  +I        S   +  +
Sbjct: 687 GELLKQTFRNEDIVARWGGEEFVLGLYNLSLEGGMKRINDFLEIWSQEIFITSLEHTFQV 746

Query: 219 TISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           T+SAGIAE     + + T+   A +ALY AK S  +RV+   +
Sbjct: 747 TLSAGIAEYPSDGQTLQTLYQSAQKALYQAKTSQGDRVLTIQE 789


>gi|160937062|ref|ZP_02084425.1| hypothetical protein CLOBOL_01951 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439963|gb|EDP17711.1| hypothetical protein CLOBOL_01951 [Clostridium bolteae ATCC
           BAA-613]
          Length = 319

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 15/164 (9%)

Query: 105 RIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           R D L+GLLN   F  +   +    +  + +  DID+FK+IND +GHP+GDK +   S+ 
Sbjct: 156 RHDSLTGLLNRLYFKETCERFQADGDNGAFLMMDIDWFKKINDQYGHPIGDKTLISFSES 215

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALG---SSEQEAAILANDLRKIIENSQINISSGPSIH- 217
           L  V        R+GG+EF     G     E E   L+  L    E  Q  +     IH 
Sbjct: 216 LKSVISPASLAARMGGDEFTLYLSGIRQRGEVEDFFLS--LMTDWEERQKAL----HIHD 269

Query: 218 -ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++ISAG+A   + +     ++ +ADQALY+AKK   N ++ + 
Sbjct: 270 QVSISAGVAFTSNADTSYEALLAQADQALYLAKKKKNNELIHWE 313


>gi|91793664|ref|YP_563315.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91715666|gb|ABE55592.1| diguanylate cyclase [Shewanella denitrificans OS217]
          Length = 341

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 10/161 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+ +LN  AF   + +   + +    +V  DID+FK  NDN+GH +GD V+  ++ ++
Sbjct: 182 DALTNVLNRRAFDEDIRAIVAQKTAGNCLVLLDIDHFKAFNDNYGHQLGDMVLKTVAKRV 241

Query: 163 V--VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HI 218
                 GT ++  R GGEEFA     S  + A  LA+ LR+ IE   +      +    I
Sbjct: 242 QEGCRDGTKLY--RFGGEEFAIIIPKSQLRVARQLADGLRRAIEKLTLKDRRNDTKIDAI 299

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           T S G++E    + ++  I   D+ LY AK  GRNRV+  S
Sbjct: 300 TASFGVSEWQPGQSVAEFIEATDKLLYQAKHLGRNRVMPMS 340


>gi|288957149|ref|YP_003447490.1| GGDEF-domain-containing signaling protein [Azospirillum sp. B510]
 gi|288909457|dbj|BAI70946.1| GGDEF-domain-containing signaling protein [Azospirillum sp. B510]
          Length = 1021

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 21/180 (11%)

Query: 100 ISQLSRIDCLSGLLNHSAF---ISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPV 150
           +  L+  D L+GL N       +  L + N+       L+++F D+D FK IND FGH  
Sbjct: 560 LDHLAHFDPLTGLPNRLTLEQHVDRLIADNKASGNAAPLALLFLDMDNFKFINDGFGHKS 619

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+++  L  ++    G  +F+ RLGG+EF     G   +E   +A  + + +  +   +
Sbjct: 620 GDELLMMLGLRIRKGAGDGVFLARLGGDEFVVVVQGGDAEEPVEVARRVEQAM--AAPFL 677

Query: 211 SSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF-SDIENN 264
             G    ++ S GIA      RC  +    ++  AD A+Y AK SGR R+  F SD+  N
Sbjct: 678 VEGQHFFVSCSVGIARYPWDGRCFDD----LLQNADTAMYRAKDSGRGRICTFTSDMNRN 733


>gi|261210896|ref|ZP_05925186.1| GGDEF family protein [Vibrio sp. RC341]
 gi|260839871|gb|EEX66471.1| GGDEF family protein [Vibrio sp. RC341]
          Length = 527

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 15/190 (7%)

Query: 78  ISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY---NE 127
           IS LL YI    L+E      +  +R ++L  +   D L+G+ N   F   L       +
Sbjct: 317 ISFLLSYIMRMQLEEQQHLTAMIEDRTAELRYLAEHDSLTGIYNRRYFSRQLCRMLDEAQ 376

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALG 186
             +++ FD+D+FK+IND +GH  GD  +  +   +  ++  +  FV RLGG+EFA  +  
Sbjct: 377 AFTLISFDVDHFKEINDTYGHLAGDHALQHVVHTVQKILMESDTFV-RLGGDEFAILSSL 435

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALY 245
           +   E       +R+ +E+S   +S    + +TIS G +  C + EP   I+   D  LY
Sbjct: 436 TERNELVEYLEGIRQSVEHSPFIVSDELQLALTISIGASTNCQYTEP--EILQSVDNQLY 493

Query: 246 VAKKSGRNRV 255
            +K  GRNRV
Sbjct: 494 ESKSRGRNRV 503


>gi|205352622|ref|YP_002226423.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205272403|emb|CAR37283.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
          Length = 660

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSDSLIRTADTAMYNAKEGGRGQFC 390

Query: 257 CFS 259
            FS
Sbjct: 391 VFS 393


>gi|126665383|ref|ZP_01736365.1| sensory box/GGDEF/GAF/EAL domain protein [Marinobacter sp. ELB17]
 gi|126630011|gb|EBA00627.1| sensory box/GGDEF/GAF/EAL domain protein [Marinobacter sp. ELB17]
          Length = 911

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 10/179 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           E    Y+ +++L     L   L  +  ++     NE+L+++F D+D FKQ+ND  GH VG
Sbjct: 735 ESMAKYDALTELPNRVLLGDRLTQAMRLAE--RNNERLALLFIDLDGFKQVNDTLGHGVG 792

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQIN 209
           D ++  ++ ++           R GG+EF      +G  E+  ++++  L  I E   + 
Sbjct: 793 DDLLKKITWRVAQELRGSDTFSRFGGDEFVVVLPEIGKMERAESVVSRILLAIAEKVTL- 851

Query: 210 ISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             +   I IT S G+      E +    ++ +ADQA+YVAK+ GRN+   F D EN+  
Sbjct: 852 --AEKEIFITASIGVTFYPQSETLDADQLLRQADQAMYVAKQKGRNQFQYF-DTENDKA 907


>gi|320353672|ref|YP_004195011.1| diguanylate cyclase [Desulfobulbus propionicus DSM 2032]
 gi|320122174|gb|ADW17720.1| diguanylate cyclase [Desulfobulbus propionicus DSM 2032]
          Length = 332

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 10/169 (5%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFG 147
           I Y  I   +R D L+GL N   F   +G+  E+       L++   D+D+FK +ND  G
Sbjct: 165 IEYEEIFAQARKDSLTGLPNRFVFEERIGAIVEQANRHGRPLTLAALDLDHFKAVNDTMG 224

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD+V+  +++ L         + R+GG+EF      ++ ++A  LA  L + +E   
Sbjct: 225 HLMGDQVLKQVAEVLQRQIRLSDLLVRMGGDEFLLVLPDTAMEDARFLAERLCQAVEELN 284

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           I   +G    + +S G++E      +   + RAD  LY AK +GR +V 
Sbjct: 285 IVTQAG---RLAVSIGLSEWKSGMQLDAWLERADDILYQAKANGRAQVA 330


>gi|313894742|ref|ZP_07828303.1| diguanylate cyclase (GGDEF) domain protein [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312976651|gb|EFR42105.1| diguanylate cyclase (GGDEF) domain protein [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 573

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 75/160 (46%), Gaps = 18/160 (11%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           YNR+      D  S L N   F         K S   FD+D+FK +ND  GH  GD V+ 
Sbjct: 422 YNRLQLQKSFDAFSALANERGF---------KFSFAIFDVDHFKSVNDTKGHLEGDNVLK 472

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++  +           R GG+EF   AL    +  A    DLR+ +E +          
Sbjct: 473 KIARTVHDEIDRRHVFIRYGGDEFILLALHYDLETMAAFCEDLRRKLEVALAG------- 525

Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +T+S G++    +K+ +  +I RAD+ALYV+K+ GRN V
Sbjct: 526 -VTMSFGVSTWHGNKDRLRALIDRADRALYVSKEKGRNAV 564


>gi|253999197|ref|YP_003051260.1| PAS/PAC sensor-containing diguanylate cyclase [Methylovorus sp.
           SIP3-4]
 gi|253985876|gb|ACT50733.1| diguanylate cyclase with PAS/PAC sensor [Methylovorus sp. SIP3-4]
          Length = 503

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 17/175 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++L+  D L+GL N   F   L            KL+++F D+D FK++ND+FGH +GD
Sbjct: 330 LNKLAYYDALTGLPNRLLFEDRLHQGMFACKRQGSKLAVLFVDLDKFKEVNDSFGHHIGD 389

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILAN---DLRKIIENSQ 207
            ++  ++ +L         V RLGG+EF     ++ S E    I+ N    LR       
Sbjct: 390 LLLKEIARRLRSQLREEDTVSRLGGDEFVILLNSINSVEDSEKIVRNLLAALRAPFTTES 449

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           + +    SI I I        H +  +TI+ +ADQA+Y+AK+  +     FS+I+
Sbjct: 450 VTLYQEASIGICIYPD-----HAQDEATIVNKADQAMYIAKRDSQRHYAFFSEID 499


>gi|322614960|gb|EFY11885.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322619400|gb|EFY16280.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623212|gb|EFY20054.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322628502|gb|EFY25290.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322638526|gb|EFY35221.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322645332|gb|EFY41860.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651785|gb|EFY48157.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654318|gb|EFY50640.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659284|gb|EFY55532.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322662715|gb|EFY58922.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322667674|gb|EFY63834.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671912|gb|EFY68033.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322677042|gb|EFY73106.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322680296|gb|EFY76335.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685275|gb|EFY81271.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323196175|gb|EFZ81334.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199334|gb|EFZ84428.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204792|gb|EFZ89788.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323205912|gb|EFZ90875.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323217239|gb|EGA01960.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323220168|gb|EGA04631.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225578|gb|EGA09806.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323232101|gb|EGA16208.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323234628|gb|EGA18715.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323238080|gb|EGA22139.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243317|gb|EGA27336.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248427|gb|EGA32362.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252533|gb|EGA36376.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255442|gb|EGA39208.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260844|gb|EGA44446.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267569|gb|EGA51052.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323271001|gb|EGA54432.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 660

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 390

Query: 257 CFS 259
            FS
Sbjct: 391 VFS 393


>gi|194451806|ref|YP_002045745.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|198242265|ref|YP_002215442.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|205358994|ref|ZP_03224186.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|194410110|gb|ACF70329.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|197936781|gb|ACH74114.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205339461|gb|EDZ26225.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|326623189|gb|EGE29534.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 663

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSDSLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFS 259
            FS
Sbjct: 394 VFS 396


>gi|157960576|ref|YP_001500610.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157845576|gb|ABV86075.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
          Length = 375

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 88/173 (50%), Gaps = 12/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           K+L   + R   L+ ID L+ + N   F       I +     + LSI+  D+D+FK +N
Sbjct: 198 KKLLQQFKR---LALIDGLTNISNRRHFDDVLTQEIKASLRTLQPLSIIMVDVDFFKPLN 254

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D+ GH VGDK +  ++  L      P   V R GGEEF  A   +    A  +A  ++  
Sbjct: 255 DSLGHQVGDKHLTKIAAVLNSALERPRDLVARYGGEEFVIALPDTDLSGAIRVAEKIKLA 314

Query: 203 IENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           I ++++ + SS  S ++T+S G+A+       + ++   D+ LY AK SGR+R
Sbjct: 315 ISDAELHHPSSKVSGYVTVSQGVAQWQEGMVPAQLLEMTDKLLYQAKSSGRDR 367


>gi|16124908|ref|NP_419472.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15]
 gi|13421870|gb|AAK22640.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15]
          Length = 694

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 19/173 (10%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  L+  D L+GL N + F       +S+  +  E   ++  D+D+FK IND  GH  GD
Sbjct: 266 IETLAFKDPLTGLPNRTLFQHRFQEAVSASETLGEMFGLIMIDVDHFKDINDTLGHDAGD 325

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA---AALGSSEQEAAI--LANDLRKIIENSQ 207
            ++  L+  L   F T   V RLGG+EFA       G ++    I  L + LR+ I++  
Sbjct: 326 ALLKRLAGMLQHAFRTGDTVARLGGDEFAVILRGLHGEADMTRPIEALQDLLRRPIQHGG 385

Query: 208 INISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + ++  SI   +   + A+  H      +I  AD ALY AK++GRNR + F 
Sbjct: 386 RSFTASASIGAALHGDLDADPAH------MIKNADIALYRAKEAGRNRSIVFE 432


>gi|297579665|ref|ZP_06941592.1| GGDEF family protein [Vibrio cholerae RC385]
 gi|297535311|gb|EFH74145.1| GGDEF family protein [Vibrio cholerae RC385]
          Length = 359

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 77/164 (46%), Gaps = 19/164 (11%)

Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+G LN       L          NE   I   DID+FK +ND +GH  GDKVI
Sbjct: 178 LSTRDALTGTLNRHQLDGFLKKCLRHRQLANESAVIAVIDIDHFKSVNDLYGHDTGDKVI 237

Query: 156 AFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
                Q+V +  T       + RLGG+EF      +S   A ++ + +   I+ +     
Sbjct: 238 T----QVVEIMNTHCRELDLLFRLGGDEFLLLFENTSLTNATLVMSHIGCRIQQTHYPCH 293

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +     +T+S G+AE    +       RADQALY +KK G+NRV
Sbjct: 294 AK----VTVSVGLAEALRTDDPEQWFKRADQALYHSKKMGKNRV 333


>gi|262373724|ref|ZP_06067002.1| GGDEF domain-containing protein [Acinetobacter junii SH205]
 gi|262311477|gb|EEY92563.1| GGDEF domain-containing protein [Acinetobacter junii SH205]
          Length = 573

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 9/175 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNE---KLSIVFFDIDYFKQ 141
           ++LK+  +  +++ +++  D L+G+ N  A   +I  L S      K  ++  DID FK 
Sbjct: 399 AMLKQRDMMESQLKKIANSDVLTGVANRLALDEYIRVLESRPNAFSKTGVIVIDIDNFKL 458

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH VGD+VI  ++DQL         + R GG+EF           A  +A  +R 
Sbjct: 459 VNDQYGHIVGDQVITMIADQLKHNVRASDLIVRYGGDEFLVVIENIQLDAAKHIAESIRT 518

Query: 202 IIENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I +  I +SS G SI +++S G+A     E    ++  ADQ++  AK  G+N V
Sbjct: 519 EIASQFIEVSSLGESIQVSVSIGVA--VGAESWLELLENADQSMLRAKAKGKNVV 571


>gi|238917494|ref|YP_002931011.1| hypothetical protein EUBELI_01572 [Eubacterium eligens ATCC 27750]
 gi|238872854|gb|ACR72564.1| Hypothetical protein EUBELI_01572 [Eubacterium eligens ATCC 27750]
          Length = 600

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 17/209 (8%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELF-ISYNRISQL---SRIDCLSGLLNHSAFIS 120
           ++E L  +   +T S     + G ++ E    SYN+IS +    + D L+ + N     +
Sbjct: 216 VMETLRFIGTVMTKSDGRKIVVGRVIPEADNRSYNQISDMIEELQFDSLTHVYNKKTITA 275

Query: 121 SL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     N +++I   D+D+FK++ND +GH  GDK++A +  +L  V G    VGR+
Sbjct: 276 YAVKCLKEEKNNRVTIAVLDVDHFKKVNDVYGHMYGDKILARVGRKLKEVVGEDGVVGRI 335

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQIN---ISSGPSIHITISAGIAERCHK-E 231
           GG+EF     G +++ A  L   LR I   +QI    +     + IT S G +   +   
Sbjct: 336 GGDEFIIVFNGINDEHA--LRGMLRAI--RTQIKWEFVDDFEDLMITCSIGASYSPNNGT 391

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSD 260
               +  +AD  LYVAK+ GR+R V F D
Sbjct: 392 EYEELFKKADYCLYVAKEKGRDRYVFFRD 420


>gi|220908588|ref|YP_002483899.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7425]
 gi|219865199|gb|ACL45538.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7425]
          Length = 337

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 16/175 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L  ID L+G+ N   F        S L      L ++  D+DYFK  ND+ GH +GD
Sbjct: 163 LKKLVAIDGLTGISNRRRFDQYFQQEWSRLAREELSLGLILADLDYFKPYNDSHGHLMGD 222

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
             +  ++  +  V   P   V R GGEEFA     +S      +A  +R+ +++  +  +
Sbjct: 223 DCLRTIAQTIGRVLKRPGDLVSRYGGEEFAIVLPNTSADGTFKVAEAIRQQVQSLNLPHN 282

Query: 212 SGPSIHITISAGIAERCHKEPI-----STIIYRADQALYVAKKSGRNRVVCFSDI 261
             P   +T+S G+A      PI       +I  AD+ALY+AK  GRN+VV   DI
Sbjct: 283 QSPHGIVTLSLGVAALT---PIVGFSPDYLIAIADRALYLAKARGRNQVVYLQDI 334


>gi|171319753|ref|ZP_02908840.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
 gi|171094989|gb|EDT40014.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
          Length = 508

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S L+EL  +  ++  ++  D ++G  N   FI  +               ++  D+D FK
Sbjct: 331 SALQELRRTNQKLEYMAATDPMTGASNRRQFIGQVEREIVRAERDGTPFCLLALDLDNFK 390

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH +GD+V+  +  Q +        + R+GGEEF A       + A + A  +R
Sbjct: 391 NINDAYGHQIGDEVLRGVVRQCLEAIRPAGALARVGGEEFMALLPEMPLEGARMTAERVR 450

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             I +S   +     + +T+S G+A+       +  ++   D+ LY AK+ GRNRVV 
Sbjct: 451 SSIASSPFGLDF-KRVQVTVSVGVAQYGVDGSTVDALLRAVDERLYQAKRDGRNRVVA 507


>gi|167922268|ref|ZP_02509359.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei BCC215]
          Length = 688

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 4/127 (3%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186
           KL+I+F D+D FK IN + GHP GD+V+   S +L+        V RLGG+EF       
Sbjct: 288 KLAILFMDLDGFKTINGSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESV 347

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245
           SS+ EAA +A ++ + +   + N   G  + +T S GIA      +   T++  AD A+Y
Sbjct: 348 SSDDEAARVARNVLERMRKGRWN--DGQVLQVTPSIGIALYPKDGDTADTLLRHADAAMY 405

Query: 246 VAKKSGR 252
            AK+ GR
Sbjct: 406 AAKRGGR 412


>gi|119471142|ref|ZP_01613674.1| hypothetical protein ATW7_09201 [Alteromonadales bacterium TW-7]
 gi|119445798|gb|EAW27080.1| hypothetical protein ATW7_09201 [Alteromonadales bacterium TW-7]
          Length = 298

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 11/164 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y+R+ +L+  D L+GL N S F       + +   Y    S++  D+D FKQ+ND FGH 
Sbjct: 134 YSRVLKLATKDSLTGLNNRSQFNDILSQKLENCRRYQRPFSLMLLDLDNFKQVNDKFGHK 193

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD  +   +  L         V R GG+EFA        +   +++  + + ++ S + 
Sbjct: 194 IGDDTLKEFATVLNSSIRATDTVFRFGGDEFAILIEDPEFKTNQVVSERIMQFVKQSSLM 253

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
                ++ I  +  ++  C  E    I  RAD+ LY AK SGRN
Sbjct: 254 SKHEVTVSIGYTLAMSNDCDIE----IFSRADKGLYKAKASGRN 293


>gi|78485494|ref|YP_391419.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
            XCL-2]
 gi|78363780|gb|ABB41745.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Thiomicrospira crunogena XCL-2]
          Length = 1466

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 16/169 (9%)

Query: 96   SYNRISQLSRIDCLSGL---------LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNF 146
            S  +I  L+  D L+GL         LNHS  IS+    N  L+++F D+D+FK +ND  
Sbjct: 1031 SEEKIKHLAHYDPLTGLVNRELLMDRLNHS--ISTADRNNTPLALLFIDLDHFKNVNDTL 1088

Query: 147  GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
            GH VGD+++  +  +++ +      + R GG+EF      + E  A  +A    KI+E+ 
Sbjct: 1089 GHQVGDQLLIEVGQRILKILRDEDTIARQGGDEFIVVLPDTGENGAVHVA---EKILESI 1145

Query: 207  QINISSGP-SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
               ++  P  + IT S GIA      +   +++  AD A+Y AK  GRN
Sbjct: 1146 SDQLNLKPYKLFITPSIGIAVYPQDGKDADSLLKNADTAMYQAKNDGRN 1194


>gi|265992964|ref|ZP_06105521.1| diguanylate cyclase [Brucella melitensis bv. 3 str. Ether]
 gi|262763834|gb|EEZ09866.1| diguanylate cyclase [Brucella melitensis bv. 3 str. Ether]
          Length = 240

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 23/229 (10%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY- 97
           IAT+I I+       G+    G++   V  L  +++   I++ LG    S L+EL  SY 
Sbjct: 21  IATIISIS----LSTGIRFALGVKSDTVTILVRLLLPFLIAMPLGVFWFSRLEELERSYR 76

Query: 98  ------NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFGH 148
                 N +++++ +D L+GLLN  +FI    + N+     +F   D+DY KQIND +GH
Sbjct: 77  TAVKRANELARVASVDPLTGLLNRRSFIQQFNAANKAGVRGWFLIVDVDYLKQINDQYGH 136

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILAN-DLRK--IIE 204
           P GD  I  ++  L     +   + R+GG+EF A    G+     ++L++  LR   ++ 
Sbjct: 137 PAGDDAIIAVAPALEDCLSSDSLIARIGGDEFCAFVPKGAINDVDSVLSDISLRADGLLR 196

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             + N+ S     +T+S G       +    ++  AD+ LY  KKS R 
Sbjct: 197 EKRPNVGS----SLTVSVGRISCKTGQIFEEVLSIADEQLY-RKKSQRQ 240


>gi|258512070|ref|YP_003185504.1| diguanylate cyclase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478796|gb|ACV59115.1| diguanylate cyclase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 720

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 87/182 (47%), Gaps = 12/182 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S+L E    Y  +   S  D  +GLLN+  F   L          N  +S++  D+D+FK
Sbjct: 372 SVLLENAKLYQELQDRSFRDEATGLLNYRYFYEELSRRVQVSLRENRPVSVLIVDVDFFK 431

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           + ND +GH  GD V+  +   L           R GGEEF A  L +S +EA  +A  +R
Sbjct: 432 RFNDTYGHLAGDVVLREVGRILERHAAPDGVAARYGGEEF-AVLLWASAREAYEIAEAIR 490

Query: 201 KIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYV-AKKSGRNRVVC 257
           + +    ++        IT+S G+A  C  H E    ++ +AD A+Y  AK+ GRNR   
Sbjct: 491 QDVSKLAVDFEGYHLQGITVSIGMAT-CPDHSESDRDLLVKADSAMYWGAKQRGRNRTAM 549

Query: 258 FS 259
           ++
Sbjct: 550 YA 551


>gi|241767132|ref|ZP_04764898.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
 gi|241362279|gb|EER58297.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
          Length = 508

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 8/173 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           +L    +R S  +R D L+G LN      ++             L +   DID FK IND
Sbjct: 336 QLQQELDRASAQARHDPLTGSLNRKGLDEAMEREIARARRRGAPLCLALLDIDNFKTIND 395

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD  +  L+     V      + R GGEEF      +           L++ + 
Sbjct: 396 RLGHTAGDAALVHLAQVTREVMRPQDLLARYGGEEFVLILPDTPVAHGVAAMTRLQREL- 454

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            ++  +     + IT SAG+A+    E  +  I RAD+++Y+AK+SG+NRV+ 
Sbjct: 455 TTRFFLQGKEKVLITFSAGVAQLGESETSTEAIQRADKSMYLAKRSGKNRVMA 507


>gi|222525055|ref|YP_002569526.1| diguanylate cyclase [Chloroflexus sp. Y-400-fl]
 gi|222448934|gb|ACM53200.1| diguanylate cyclase [Chloroflexus sp. Y-400-fl]
          Length = 301

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y  +  L+  D L+G+ N  AF  +L         Y   L+++  DID FK  ND +GH 
Sbjct: 123 YAEVEALAVTDSLTGIANRRAFDRALEREFVRARHYGYPLALIMVDIDSFKHYNDTYGHL 182

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  ++  L        FV R GGEEFA     + +Q A  +A  +R+  E S   
Sbjct: 183 AGDDRLRAVAQLLAQSVREVDFVARYGGEEFAIILTNTDKQTAIAVAEQIRRKAEMSCPE 242

Query: 210 ISSG-PSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +G P    T+S G+A      + P++ ++  AD A   AK++G+NRV
Sbjct: 243 PLNGLPVSGYTLSLGVAAFPDDAQTPVA-LLLAADNAELAAKRAGKNRV 290


>gi|91224534|ref|ZP_01259796.1| putative GGDEF family protein [Vibrio alginolyticus 12G01]
 gi|91190876|gb|EAS77143.1| putative GGDEF family protein [Vibrio alginolyticus 12G01]
          Length = 656

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 79/162 (48%), Gaps = 11/162 (6%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAF 157
           ++ID L+  LN +A I ++ S   K        +   D+D FK IND +GHP GD V+  
Sbjct: 482 AKIDSLTCALNRAAIIETIKSQTSKAEGDFRYVLALIDLDDFKAINDQYGHPTGDLVLQQ 541

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +   L        ++GRLGGEEF        E +       L K I  S+ ++ S  +  
Sbjct: 542 VCKALKAKLNKGDYLGRLGGEEFILLLKNVDEIDVPFRVQSLHKTI--SEKSVHSLNNHQ 599

Query: 218 ITISAGIAERCHKEPISTI--IYR-ADQALYVAKKSGRNRVV 256
           + ISA +A      P++    +Y   DQALY AKK G+N +V
Sbjct: 600 LNISASLAYLSTSMPLTNFDELYSILDQALYNAKKQGKNSLV 641


>gi|148550034|ref|YP_001270136.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Pseudomonas
           putida F1]
 gi|148514092|gb|ABQ80952.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida F1]
          Length = 708

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 85/159 (53%), Gaps = 15/159 (9%)

Query: 107 DCLSGLLNHSAFISSLGS---YNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN   F  +       NE+     ++++ D+D FK+IND+ GH  GD+V+ +++
Sbjct: 281 DPLTGLLNRRGFYQAAEGALLRNERSDKAQALMYMDLDGFKRINDSLGHDAGDRVLRWVA 340

Query: 160 DQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +QL    G+   + R+GG+EF A   +L   EQ        L ++  + +++   G  + 
Sbjct: 341 EQLKDCLGSEALLARMGGDEFTALFDSLPYPEQAGRYAERLLERVSISHEVD---GLDVC 397

Query: 218 ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + +S GIA    C    +  ++  AD A+Y AK++GR +
Sbjct: 398 LGVSIGIATYPDCGAN-VEGLLRSADAAMYAAKQAGRQQ 435


>gi|172058717|ref|YP_001815177.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Exiguobacterium sibiricum 255-15]
 gi|171991238|gb|ACB62160.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Exiguobacterium sibiricum 255-15]
          Length = 878

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 15/174 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +I +L+  D L+G +N + F   L         +E + + F D+D FK +ND+FGH VGD
Sbjct: 453 KIRRLAYYDHLTGAINRTYFEEVLHHLIETEQADETIVLCFIDLDDFKLVNDSFGHHVGD 512

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQ---EAAILANDLRKIIENSQ 207
           +++  ++ +L         V R GG+EF      + S +Q     A L +DL++      
Sbjct: 513 QLLIQVAKRLQEAAEPDDLVARQGGDEFTVILRNVTSDDQARCRTARLLDDLKRTYAIEG 572

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           I + S PS    I A    R  ++ + T++ +AD A+Y AK  G   ++ F DI
Sbjct: 573 IELISNPS----IGAVSCRRTSEKHVVTLLKQADLAMYQAKTGGGKSIIFFEDI 622


>gi|312127440|ref|YP_003992314.1| diguanylate cyclase with gaf sensor [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777459|gb|ADQ06945.1| diguanylate cyclase with GAF sensor [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 557

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 97  YNRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           Y ++  ++ +D L+G  N             +S G Y   +SI  FD+D FK++ND +GH
Sbjct: 382 YQQMRSMAMVDGLTGAFNRIYLYEVLEREIQASAGRY--PISIALFDVDNFKKLNDTYGH 439

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GDKV+  +             V R GGEEF          EA  +   +R+ IE+  I
Sbjct: 440 LFGDKVLQTIVRIAREKVRKGDIVARYGGEEFIIVFNHLESNEAYKVVERIRRAIESETI 499

Query: 209 NISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              +     +T+S GIA    H E +  +I  AD A+Y AK SG+N  V ++
Sbjct: 500 E-DNLIQTRVTVSFGIASYPLHAENVKDLIKCADVAMYRAKSSGKNCTVVYN 550


>gi|302186038|ref|ZP_07262711.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 748

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 21/167 (12%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N +  ++ L +         E+ +++F D+D FK +ND+ GH  GDK++  ++
Sbjct: 320 DELTSLFNRAYLMNELTTAFEIRDPRYERATVLFLDLDGFKVVNDSMGHLAGDKLLKAVA 379

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINIS---SGP 214
           ++L     +   + R+GG+EFA   +G  + E A+      K+ E   SQ++ +    G 
Sbjct: 380 NRLQTCVRSNDVLARIGGDEFAILLMGKDQPETAV------KMAERIVSQLHTAIQIEGQ 433

Query: 215 SIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I I+ S GI  A   H +P   ++  AD A+Y AKK GR R   F+
Sbjct: 434 DIFISCSIGIVTAGESHTKP-EELLRDADVAMYSAKKQGRGRWSIFN 479


>gi|297538054|ref|YP_003673823.1| PAS/PAC sensor-containing diguanylate cyclase [Methylotenera sp.
           301]
 gi|297257401|gb|ADI29246.1| diguanylate cyclase with PAS/PAC sensor [Methylotenera sp. 301]
          Length = 331

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 85/171 (49%), Gaps = 11/171 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG---SYNEK----LSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D L+ + N + F   L    SY ++    L+++F D+D FK+IND +GH  G
Sbjct: 159 RLENLAHFDALANVPNRTLFNDRLKLALSYAKREKKMLAVMFIDLDLFKEINDLYGHETG 218

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  +S QLV        V R+GG+EF        E E   L     KI+E     I 
Sbjct: 219 DIVLKKVSRQLVSCVRESDTVARMGGDEFVILLPIIDEIEDVKLV--ASKIVEAVAQPIK 276

Query: 212 SGPS-IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              + +HIT S GIA    H +    ++  AD A+Y AK SG+N+   F +
Sbjct: 277 VAKTHLHITCSIGIAVYPQHGKDEKLLVINADMAMYQAKNSGKNQAKFFEE 327


>gi|288575138|ref|ZP_06393495.1| response regulator receiver modulated diguanylate cyclase
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570879|gb|EFC92436.1| response regulator receiver modulated diguanylate cyclase
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 342

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 94/199 (47%), Gaps = 21/199 (10%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEK 128
           IT+ L L      +L++       I ++SR D L+G+ N    +S L          N  
Sbjct: 135 ITVGLRLVEAYRKVLRQ----KEAIDRMSRTDELTGIFNRRYVLSYLEKSLDRAQRENRP 190

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LSI   D+D+FK INDN+GH  GD V+  L   +          GR GG+EF      + 
Sbjct: 191 LSICLCDVDFFKHINDNYGHQAGDFVLRKLGYFMETFLEKQGVAGRYGGDEFLFVLPEAD 250

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-------STIIYRAD 241
           E EA  +   L + I ++   + +G  + I++S G++      P+       S +I  AD
Sbjct: 251 EAEAKEIVCSLYERILSAHF-VFNGKELPISLSCGLS--FVLSPMEHGMWNSSNLIKMAD 307

Query: 242 QALYVAKKSGRNRVVCFSD 260
            ALY AK+ G+NR+  + D
Sbjct: 308 DALYEAKRRGKNRICFYRD 326


>gi|213420659|ref|ZP_03353725.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 527

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 123 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 182

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF    A  +  + E  A+ + 
Sbjct: 183 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRIL 242

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 243 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 297

Query: 257 CFS 259
            FS
Sbjct: 298 VFS 300


>gi|193222243|emb|CAL60790.2| conserved hypothetical protein; putative membrane protein, putative
           GGDEF domain [Herminiimonas arsenicoxydans]
          Length = 381

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 88/189 (46%), Gaps = 25/189 (13%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEK 128
           +I LLL Y       E  +  NR   L+  D LS L N  A +++ G             
Sbjct: 204 SIGLLLLYF------ERTVEENR--HLATHDELSKLFNRRAIVAA-GERELYLSIRLQRD 254

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+I F DID FK+ ND FGH  GD VIA ++  L     +   VGR GGEEF     G  
Sbjct: 255 LAIAFIDIDLFKRFNDEFGHAAGDTVIAEVAAVLQQTCRSIDMVGRYGGEEFLVILPGVD 314

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIA--ERCHKEPISTIIYRADQALY 245
            Q A  +   L + +   +        IH +TIS G+A   R  +   + ++ RAD ALY
Sbjct: 315 SQSAVQIGQRLVEAMREYRF-----LGIHPVTISIGMAILPRNAECSWAQLLRRADAALY 369

Query: 246 VAKKSGRNR 254
            AK  GR+R
Sbjct: 370 EAKNMGRDR 378


>gi|89900673|ref|YP_523144.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
 gi|89345410|gb|ABD69613.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
          Length = 327

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 71/138 (51%), Gaps = 20/138 (14%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKV-IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           KLS++  D+DYFK  ND +GHP GDKV IA +     V+  +   + R GGEEFA     
Sbjct: 184 KLSLIMIDVDYFKDYNDAYGHPAGDKVLIAVVQALQAVLLRSTDKLARYGGEEFAVILPD 243

Query: 187 SSEQEA---------AILANDL--RKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
             E +A         A+LA +L  RK   ++Q+ +S G S   T+ AG            
Sbjct: 244 CGEHKALAIAELLRTAVLALNLPHRKSAISNQLTVSLGTS---TLKAG-----QTSSAQA 295

Query: 236 IIYRADQALYVAKKSGRN 253
           ++  ADQALY AK  GRN
Sbjct: 296 LLDAADQALYAAKNQGRN 313


>gi|62180267|ref|YP_216684.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62127900|gb|AAX65603.1| putative PAS/PAC domain; diguanylate cyclase/phosphodiesterase
           domain 1; Diguanylate cyclase/phosphodiesterase domain 2
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
          Length = 660

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSDSLIRTADTAMYNAKEGGRGQFC 390

Query: 257 CFS 259
            FS
Sbjct: 391 VFS 393


>gi|320105383|ref|YP_004180973.1| diguanylate cyclase [Terriglobus saanensis SP1PR4]
 gi|319923904|gb|ADV80979.1| diguanylate cyclase [Terriglobus saanensis SP1PR4]
          Length = 454

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 83/172 (48%), Gaps = 20/172 (11%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S+LS  D L+GL N   F S L           + ++++  D+D+FKQ+ND++GH  GD
Sbjct: 277 LSELSIRDGLTGLYNRRHFDSYLNLEWRRVPRVKKPMALLLLDVDHFKQLNDHYGHQYGD 336

Query: 153 KVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
                L D   ++   P        R GGEEFA    G   +    +A  +R  I  +  
Sbjct: 337 DC---LRDIARILETQPRRASDLAARFGGEEFAVLLPGCDLEGGLEVAERIRVAIMETGG 393

Query: 209 NISSGPSIHITISAGIAERCH----KEPISTIIYRADQALYVAKKSGRNRVV 256
              S P   +T+S G+   C+     +    +I RADQA+Y AK +GRN V+
Sbjct: 394 EHYSNPEKRMTVSIGVT--CYLPATDDSPERMIGRADQAMYKAKGAGRNCVI 443


>gi|224583808|ref|YP_002637606.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224468335|gb|ACN46165.1| hypothetical protein SPC_2029 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322714741|gb|EFZ06312.1| Cyclic di-GMP phosphodiesterase Gmr [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 663

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSDSLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFS 259
            FS
Sbjct: 394 VFS 396


>gi|221233629|ref|YP_002516065.1| PAS-family GGDEF/EAL protein [Caulobacter crescentus NA1000]
 gi|220962801|gb|ACL94157.1| PAS-family GGDEF/EAL protein [Caulobacter crescentus NA1000]
          Length = 694

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 19/173 (10%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  L+  D L+GL N + F       +S+  +  E   ++  D+D+FK IND  GH  GD
Sbjct: 266 IETLAFKDPLTGLPNRTLFQHRFQEAVSASETLGEMFGLIMIDVDHFKDINDTLGHDAGD 325

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA---AALGSSEQEAAI--LANDLRKIIENSQ 207
            ++  L+  L   F T   V RLGG+EFA       G ++    I  L + LR+ I++  
Sbjct: 326 ALLKRLAGMLQHAFRTGDTVARLGGDEFAVILRGLHGEADMTRPIEALQDLLRRPIQHGG 385

Query: 208 INISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + ++  SI   +   + A+  H      +I  AD ALY AK++GRNR + F 
Sbjct: 386 RSFTASASIGAALHGDLDADPAH------MIKNADIALYRAKEAGRNRSIVFE 432


>gi|190891453|ref|YP_001977995.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190696732|gb|ACE90817.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 422

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 11/173 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHS-----AFISSLGSYNEKLS--IVFFDIDYFKQINDNFGHP 149
           YN + + +  D L+G+ + +     A +    +  + LS  ++  D D+FK +ND +GH 
Sbjct: 249 YNDLLERTGRDMLTGVYDRTRMELEAPLMLREALRQGLSATVLIIDADHFKDVNDGYGHL 308

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++ +L     +   + R GGEEF A   G++ +E  +LA  LR  I  S   
Sbjct: 309 QGDVVLKSIAARLGTTLRSSDRIFRFGGEEFVAVCPGTNHEEGLLLAERLRWTIATSVKT 368

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
               P   +T+S G+A         + ++  AD  LY AKK GRN VV  S +
Sbjct: 369 PDGSP---VTVSIGVATADEDGSGFTAVLSAADGRLYAAKKGGRNCVVGRSGL 418


>gi|119964390|ref|YP_948938.1| GGDEF domain/EAL domain-containing protein [Arthrobacter aurescens
           TC1]
 gi|119951249|gb|ABM10160.1| putative GGDEF domain/EAL domain protein [Arthrobacter aurescens
           TC1]
          Length = 517

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 86/167 (51%), Gaps = 9/167 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +++  D L+GL N SAF ++L       G  N++ +I+  D+D FK IND+ GH +GD
Sbjct: 81  MQRMAMTDPLTGLNNRSAFATALTKAQANGGQGNKRPAILLLDMDGFKAINDSLGHTIGD 140

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KV+  +++++         V R+GG+EFA      +  EA+ + +  R +   + +    
Sbjct: 141 KVLETVANRISGAVREQDMVARMGGDEFAVLLTEVTPAEASAIGS--RILAAVAGVMEIE 198

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           G  +   +S G+      +    ++  AD A+Y +K  GR ++  F+
Sbjct: 199 GQHLRCGVSMGLRMADPGQRAEELMMEADIAMYESKADGRGKLKVFA 245


>gi|24373770|ref|NP_717813.1| sensory box protein [Shewanella oneidensis MR-1]
 gi|24348153|gb|AAN55257.1|AE015663_7 sensory box protein [Shewanella oneidensis MR-1]
          Length = 752

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 9/162 (5%)

Query: 107 DCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N +A    +       S     S +  D+D FKQ+ND +GH  GD ++  + +
Sbjct: 318 DSLTGLANRNALFRQIQELINADSLTPGFSFMLMDLDNFKQVNDTYGHDKGDVLLVQMVE 377

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           Q+ +         RLGG+EFA    G  +++E + LA+ + K +   +  +S    ++ +
Sbjct: 378 QVKICLDPQAVFARLGGDEFAILLPGVVTQRELSQLADKINKQV-YRRYELSHDKGVYSS 436

Query: 220 ISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +S GIA        +  ++  ADQA+Y++K +GRNR   F++
Sbjct: 437 VSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTE 478


>gi|303240602|ref|ZP_07327117.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Acetivibrio cellulolyticus CD2]
 gi|302591839|gb|EFL61572.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Acetivibrio cellulolyticus CD2]
          Length = 553

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 31/204 (15%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128
           I   +++GY S    K +     R+  L+ ID ++G+ NH  F       I+   +    
Sbjct: 151 IVACIMVGYTSEQGRKNI----KRLEWLANIDGVTGVFNHRYFQTKLEEEITKADNSGST 206

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L ++  D+D FK+ NDN+GH  GD ++A  S+  +   G    V R GG+EF      ++
Sbjct: 207 LGMLMIDLDNFKRFNDNYGHKAGDILLAKTSEIFMDQTGDQDIVCRYGGDEFVILLPDAN 266

Query: 189 EQEAAILANDLRKIIEN-----------SQINISSGPSIHITISAGIAERCHKEPISTII 237
            +    +   +RK  +             ++ +S+G SI+  ++         E    +I
Sbjct: 267 SERILTVIEHIRKAFDKLTNSEEVFAIPDKVTLSAGYSIYPELA---------ESKDDLI 317

Query: 238 YRADQALYVAKKSGRNRVVCFSDI 261
            +AD ALY AK  GRN V  + DI
Sbjct: 318 MQADSALYRAKNMGRNNVKLYRDI 341


>gi|295090080|emb|CBK76187.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain [Clostridium
           cf. saccharolyticum K10]
          Length = 455

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 7/163 (4%)

Query: 107 DCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+G LN       +      ++K ++   DID FK++ND +GH  GD+V+  L++ L 
Sbjct: 290 DPLTGTLNRKGAAGCIRQSFMTDKKGTLFLLDIDNFKKVNDIYGHQAGDRVLMALANILK 349

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
           V       V R+GG+EF     G   +   ++ +  R IIE   +     P   I+IS G
Sbjct: 350 VHTRRQDTVSRMGGDEFLIYLSGCVAKN--VVEDRARSIIEAFSLEGKDYPMAGISISIG 407

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRN--RVVCFSDIENN 264
           ++ R  +E    +  +ADQALY AK++G+   R+    D EN 
Sbjct: 408 VSMREKEESFQELYLQADQALYEAKRTGKGQYRLRKKEDSENG 450


>gi|288942102|ref|YP_003444342.1| response regulator receiver modulated diguanylate cyclase
           [Allochromatium vinosum DSM 180]
 gi|288897474|gb|ADC63310.1| response regulator receiver modulated diguanylate cyclase
           [Allochromatium vinosum DSM 180]
          Length = 304

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 16/169 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+ +D L+ + N   F  +L             L++   D+DYFK  ND++GH  GD
Sbjct: 137 LDSLASLDGLTHIPNRRRFDEALKQEWARAAREGAPLALAMLDVDYFKSYNDHYGHGRGD 196

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           + +  ++D L      P   V R GGEEF      +    A  LA   R  +    I  +
Sbjct: 197 ECLRRVADALRARLQRPADLVARYGGEEFVLLLPDTDAAGALALAESCRVGVSALHIPHA 256

Query: 212 -SGPSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNRV 255
            S  + H+T+S G+A     +P S     ++ RAD+ALY AK  GRNRV
Sbjct: 257 YSAAADHVTLSIGVAA---TQPPSDGSGLLLARADEALYRAKSEGRNRV 302


>gi|229591547|ref|YP_002873666.1| putative sensory box GGDEF transmembrane protein [Pseudomonas
           fluorescens SBW25]
 gi|229363413|emb|CAY50587.1| putative sensory box GGDEF transmembrane protein [Pseudomonas
           fluorescens SBW25]
          Length = 521

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 4/132 (3%)

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
           + +  LS++ FD+D+FK+IND  GH   D V+  L  +L         + R GGEEFA  
Sbjct: 389 AQHSPLSLIMFDVDHFKRINDLKGHQCVDSVLKSLCVRLRSAIRKTDLLCRTGGEEFALI 448

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
             GS   +  +LA  LR ++       +      +T S G+A     E     + RAD A
Sbjct: 449 CPGSDLNDTTLLAEKLRALVSALPFEEAG----QVTCSFGVATWIPSESFDAFVRRADSA 504

Query: 244 LYVAKKSGRNRV 255
           +Y AK SGR++V
Sbjct: 505 MYSAKSSGRDQV 516


>gi|225850663|ref|YP_002730897.1| FOG: EAL domain protein [Persephonella marina EX-H1]
 gi|225645507|gb|ACO03693.1| FOG: EAL domain protein [Persephonella marina EX-H1]
          Length = 784

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 79/163 (48%), Gaps = 13/163 (7%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F + L           E ++++F D+D FKQ+ND +GH +GD+++  + 
Sbjct: 622 DGLTGLPNRLLFYNRLQHTLLRARRNREYVAVMFLDLDGFKQVNDTYGHDIGDELLKEVG 681

Query: 160 DQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            +L         V RL G+EF      L S E    I    L    E   IN   G  I+
Sbjct: 682 KRLQHTVRKIDTVARLAGDEFTVIIENLNSPENVNVIAKKILNSFKEPFVIN---GNKIN 738

Query: 218 ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  S GIA          T+I  AD A+Y+AKKSG+NR V ++
Sbjct: 739 VGTSIGIAVFPLDGTDADTLIKNADMAMYLAKKSGKNRYVVYT 781


>gi|172060868|ref|YP_001808520.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
 gi|171993385|gb|ACB64304.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
          Length = 466

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S L+EL  +  ++  ++  D ++G  N   FI  +               ++  D+D FK
Sbjct: 289 SALQELRRTNQKLEYMAATDPMTGASNRRQFIGQVEREIVRAERDGTPFCLLALDLDNFK 348

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH +GD+V+  +  Q +        + R+GGEEF A       + A + A  +R
Sbjct: 349 NINDAYGHQIGDEVLRGVVRQCLEAIRPAGALARVGGEEFMALLPEMPLEGARMTAERVR 408

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             I +S   +     + +T+S G+A+       +  ++   D+ LY AK+ GRNRVV 
Sbjct: 409 SSIASSPFGLDF-KRVQVTVSVGVAQYGVDGSTVDALLRAVDERLYQAKRDGRNRVVA 465


>gi|171058413|ref|YP_001790762.1| diguanylate cyclase [Leptothrix cholodnii SP-6]
 gi|170775858|gb|ACB33997.1| diguanylate cyclase [Leptothrix cholodnii SP-6]
          Length = 407

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 101/216 (46%), Gaps = 28/216 (12%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFIS---------YNRISQLSRI---DCLSGLL 113
           V+ L   ++   +SL++      +LKE  +S           R ++L  +   D L+GL 
Sbjct: 186 VDGLIAAVLGFMVSLMI--WRKHVLKETLVSELQVTRMALQERSTELQSMAVRDTLTGLW 243

Query: 114 NHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N +         ++    +  +   +  D+D FK IND +GH  GD+V+A ++  L+   
Sbjct: 244 NRAEIMRLAQRELTRAQRHGGETCFIMVDLDSFKLINDRWGHATGDRVLAAVASLLLEEL 303

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                VGRL GEEFA     ++ +EA +LA  L   +   ++ +    ++ +T S G A 
Sbjct: 304 RATDEVGRLAGEEFAVLLPQTNLEEARLLAERLHLAVARLRVPLGDA-TVRLTASIGAAS 362

Query: 227 RCHKE--PISTIIYR----ADQALYVAKKSGRNRVV 256
           +  +   P+     R    A+QAL  AK  GR+RVV
Sbjct: 363 QTGRALVPVPQQFERLFGSAEQALSSAKSQGRDRVV 398


>gi|126660384|ref|ZP_01731495.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Cyanothece sp. CCY0110]
 gi|126618305|gb|EAZ89063.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Cyanothece sp. CCY0110]
          Length = 822

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 21/205 (10%)

Query: 74  ISITISLLLGY---ISGSILKELFISYNRISQLSRI-------DCLSGLLNHSAFISSLG 123
           I I I+L+ G    I G++L  +F    + SQL+         D L+GL N       L 
Sbjct: 404 IDIVINLIRGQNNQILGTVL--IFRDVTQASQLAHQLSWEASHDNLTGLANRRELEKQLS 461

Query: 124 ----SY-NEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
               SY NE +   + + D+D FK IND  GH  GD+++  +++ L     +   + RLG
Sbjct: 462 LAIESYKNEDVEHILCYLDLDQFKIINDTCGHVAGDELLKQVTNLLQTRVRSSDILARLG 521

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPIST 235
           G+EFA    G S  +A  +AN+LR++++N +    +     + +S GI     + + I++
Sbjct: 522 GDEFALLLKGCSLGKAKTIANNLRQLVKNFRFTWDN-EIFSVGVSIGIVSINQEIQTITS 580

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           +I  AD A Y AK  GRN V  + +
Sbjct: 581 VINAADSACYTAKSRGRNCVYVYKE 605


>gi|77919670|ref|YP_357485.1| signal transduction protein [Pelobacter carbinolicus DSM 2380]
 gi|77545753|gb|ABA89315.1| diguanylate cyclase/phosphodiesterase [Pelobacter carbinolicus DSM
           2380]
          Length = 988

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 93/173 (53%), Gaps = 17/173 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           I +++  D L+ L N + F   L    E+       L+++F D+D+FK +ND+ GH  GD
Sbjct: 548 IHRMAYYDHLTELPNRALFQKELDRRLEEAVGRGHGLALMFLDLDHFKGVNDSLGHAKGD 607

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LANDLRKIIENSQINI 210
            ++  ++ +L    G   F+ RL G+EF    L   +   A+  LA ++++I+  S  N+
Sbjct: 608 LLLQKIAARLQGCLGREDFLARLNGDEF-IFLLTEIDDPVAVKALAGNVQRIMA-SPFNL 665

Query: 211 SSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             G  I++  S GIA  C   H   +  ++ RAD+ALY AK+ GRN +  FS+
Sbjct: 666 -DGDEIYVGTSIGIA--CYPLHGVDVENLMKRADRALYAAKERGRNAIELFSE 715


>gi|56751585|ref|YP_172286.1| hypothetical protein syc1576_d [Synechococcus elongatus PCC 6301]
 gi|56686544|dbj|BAD79766.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 438

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 11/194 (5%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ISSLGS 124
           +++  +   L +      +LK L ++  R+    RID L+ + N   F      +   G 
Sbjct: 236 VLLTQVAEQLSIAIAQSQLLKTLQVTNQRLQDQVRIDGLTQIPNRRRFDEYFNDVWLWGC 295

Query: 125 YNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAA 182
            +   ++++  D+DYFK  ND +GH  GD+V+  +   L  VV      V R GGEEF A
Sbjct: 296 RDHTPVALLLIDVDYFKTYNDFYGHLAGDEVLRKIGLLLNSVVLRATDLVARYGGEEFVA 355

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCH--KEPISTIIYR 239
               ++ + A  +A  L+  ++  QI  +  P +  +T+S GIA         ++ +I +
Sbjct: 356 VLPSTTLEGAQAVARRLQADLQRLQIPHNHSPVAAWVTVSIGIAVTIPTIDVALTDLIDQ 415

Query: 240 ADQALYVAKKSGRN 253
           AD+ALY AK +GRN
Sbjct: 416 ADKALYEAKSAGRN 429


>gi|88810327|ref|ZP_01125584.1| putative diguanylate cyclase [Nitrococcus mobilis Nb-231]
 gi|88791957|gb|EAR23067.1| putative diguanylate cyclase [Nitrococcus mobilis Nb-231]
          Length = 679

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 81/172 (47%), Gaps = 21/172 (12%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +LS  D L+GL N   F          L   N +++++F DID+FK  ND +GH  GD
Sbjct: 491 LRELSIRDSLTGLANRRHFDEFLDQQWRQLMRSNARIALLFIDIDHFKGYNDRYGHQAGD 550

Query: 153 KVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
              A L     V+ G     G    R GGEEF           A   A  LR+ +EN  I
Sbjct: 551 ---ACLKKIAAVIAGAARRAGDLAARYGGEEFVVVLAQVERPYAQDTAETLRRAVENLAI 607

Query: 209 -NISSGPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRV 255
            +  S  + ++T+S G+   C K       S ++  AD+ALY AK  GRNRV
Sbjct: 608 PHQDSKTASYVTVSIGLV--CAKPDAALSASRLLEAADKALYRAKSRGRNRV 657


>gi|330820418|ref|YP_004349280.1| diguanylate cyclase [Burkholderia gladioli BSR3]
 gi|327372413|gb|AEA63768.1| diguanylate cyclase [Burkholderia gladioli BSR3]
          Length = 398

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 92/168 (54%), Gaps = 12/168 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISS----LGSY---NEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ +L+ ID L+G+    AFI+     LGS       LSI   DID FK IND  GH  
Sbjct: 213 QRMERLATIDDLTGVFGRRAFIARAEALLGSARGAKSPLSIALLDIDNFKSINDRHGHAA 272

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+ +A ++  +         +GR+GGEEFA     + +++A  L + LR I+  S   +
Sbjct: 273 GDQALANVAATISREIRQADVLGRVGGEEFALLLPRTGKEDALRLVDRLRAIVATS---V 329

Query: 211 SSGPS--IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S GP+  +  T+SAG+ E    + +++ + RAD ALY AK  GRN VV
Sbjct: 330 SEGPAACVACTLSAGVDEFRACDTLASAMARADAALYAAKAKGRNCVV 377


>gi|315182217|gb|ADT89130.1| GGDEF domain protein [Vibrio furnissii NCTC 11218]
          Length = 478

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 13/168 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVG 151
            YN   Q  R+D L+G+ N  AF   L +  E      +++  D+D FK +ND +GH  G
Sbjct: 318 QYNAHHQQLRLDTLTGIQNRRAFDLDLAAMAENQQSPYALLLIDVDKFKHVNDTWGHQFG 377

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+A ++  L     T   + R+GG+EFAA    + +   A L   L +++ + +    
Sbjct: 378 DNVLARVAQVLTKNLDT-HSIYRIGGDEFAALVPVNDD---APLGEQLNRLVLDMRHQKW 433

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                H+T+S G++          ++ +AD+ALY +K++GR+   C+S
Sbjct: 434 REQGCHVTLSIGVS--IGPNTPCELVNQADKALYRSKENGRD---CWS 476


>gi|226948480|ref|YP_002803571.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum A2 str. Kyoto]
 gi|226841408|gb|ACO84074.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum A2 str. Kyoto]
          Length = 419

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 21/183 (11%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           E  I  ++  Q++  D L+ L N ++F+  L             L+I+F D+D FK++ND
Sbjct: 244 ERKIYNDKTKQMAYFDSLTELPNRNSFLKQLEHEIKLSKKKQSLLAIMFLDLDKFKEVND 303

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKI- 202
           NFGH  GDK++  ++ ++     +   + R GG+EF       + E++   LA D+ ++ 
Sbjct: 304 NFGHCTGDKLLWQVAKRVKNTISSKDLIARFGGDEFTILIRNIAHEKQVEDLAMDIIEVF 363

Query: 203 -----IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                IE   +NI +   I      G   +        +I +AD+A+Y AKK G N+   
Sbjct: 364 KEPICIEEIYVNIKTSIGISFFPKDGHTSQ-------ELIKKADKAMYDAKKRGSNKFQI 416

Query: 258 FSD 260
           + D
Sbjct: 417 YKD 419


>gi|217968638|ref|YP_002353872.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Thauera sp. MZ1T]
 gi|217505965|gb|ACK52976.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Thauera sp. MZ1T]
          Length = 737

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 105/213 (49%), Gaps = 22/213 (10%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYN---RISQLSRIDCLSGLLNHSAFISSL- 122
           E L+++  S+T  L L    G + +E+   +    RI QL+  D L+GL N +A +  L 
Sbjct: 261 EALAVLARSVTDELELRQRVGELEEEVARRHEAEARIMQLATRDALTGLPNRAALMDRLH 320

Query: 123 ------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                       L+++F D+D FK IND  GH +GD ++  ++ +L         V RLG
Sbjct: 321 QGVRAAQRSGNLLAVLFLDLDRFKWINDTLGHDLGDALLQEMALRLSRAVRECDTVARLG 380

Query: 177 GEEFAAAALGSSEQEA---AILANDLRKIIENSQINISSGPSIHITISAGIAE---RCHK 230
           G+EF A  LG   Q A   A+ A  +  I    ++    G ++ +  S G+A    + H 
Sbjct: 381 GDEF-AIVLGDLWQVADAEAVAAKIVDVITRPLEVR---GHALRVGGSVGVAVYPFQAHD 436

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           E   +++  AD A+Y AK+SG NR   FS+  N
Sbjct: 437 E--ESLLRHADLAMYHAKESGGNRHQLFSEQMN 467


>gi|254432167|ref|ZP_05045870.1| diguanylate cyclase [Cyanobium sp. PCC 7001]
 gi|197626620|gb|EDY39179.1| diguanylate cyclase [Cyanobium sp. PCC 7001]
          Length = 275

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 8/154 (5%)

Query: 107 DCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N         A  +    Y    S+   D+D FK+IND++GH  GD+V+  L+
Sbjct: 110 DILTGVPNRRLISERCRAEDARTTRYGSTYSLALIDVDNFKRINDSYGHTTGDQVLVELA 169

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L           R GGEEF A  + +  + A I+A  +  ++ + ++   S   + +T
Sbjct: 170 AVLKSCVREFDLCARWGGEEFLALFVDTGLETAEIIAQRILDMVRHLRVKAGS-EELSLT 228

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +S G+A+    E  +    RADQALY AK SGR+
Sbjct: 229 VSIGVAQHAPSELYTNTFARADQALYEAKHSGRD 262


>gi|170701230|ref|ZP_02892199.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
 gi|170133859|gb|EDT02218.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
          Length = 508

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S L+EL  +  ++  ++  D ++G  N   FI  +               ++  D+D FK
Sbjct: 331 SALQELRRTNQKLEYMAATDPMTGASNRRQFIGQVEREIVRAERDGTPFCLLALDLDNFK 390

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH +GD+V+  +  Q +        + R+GGEEF A       + A + A  +R
Sbjct: 391 NINDAYGHQIGDEVLRGVVRQCLEAIRPAGALARVGGEEFMALLPEMPLEGARMTAERVR 450

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             I +S   +     + +T+S G+A+       +  ++   D+ LY AK+ GRNRVV 
Sbjct: 451 SSIASSPFGLDF-KRVQVTVSVGVAQYGVDGSTVDALLRAVDERLYQAKRDGRNRVVA 507


>gi|157163979|ref|YP_001467537.1| phosphoglucosamine mutase [Campylobacter concisus 13826]
 gi|112801095|gb|EAT98439.1| diguanylate cyclase/phosphodiesterase [Campylobacter concisus
           13826]
          Length = 786

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 11/181 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQIN 143
           L+EL     R+ QLS  D L+GLLN  +F+S L       +  EK+ I   DI++FK IN
Sbjct: 346 LRELEEKNERLRQLSEFDSLTGLLNRQSFLSKLSEMIKTKALGEKIDIYSIDINHFKAIN 405

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D++GH VGD+V+  LS  +  +      + R GG++F       +E         L  II
Sbjct: 406 DSYGHYVGDEVLLKLSKNIKAILPEGAIISRFGGDDFMIVLKQKNEGHYREFLYYLLNII 465

Query: 204 ENSQINISSGP-SIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261
                 IS G   I +    G++     E ++  +I +A  AL  AK+    + V + DI
Sbjct: 466 AE---QISVGDYKIALGAKVGVSSTQTSEILADDLIMQAGAALDAAKRDVNTKYVFYDDI 522

Query: 262 E 262
           +
Sbjct: 523 K 523


>gi|330504863|ref|YP_004381732.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
 gi|328919149|gb|AEB59980.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
          Length = 715

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 17/165 (10%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN   F  +L S         +++++++ D+D FK+IND+ GH VGD+++  + 
Sbjct: 282 DSLTGLLNRRGFHQALESALARIERSGQRVAVLYLDLDGFKRINDSLGHDVGDQLLRRVG 341

Query: 160 DQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +QL         + R+GG+EF A    LG  E +AA +A  L +++  S  +   G    
Sbjct: 342 EQLKACLRPYDSLARIGGDEFTALLDNLGHPE-DAAKVAEKLIELV--SVRHTLDGVDFT 398

Query: 218 ITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  S GIA  C  E    +  ++  AD A+Y AK++GR +   FS
Sbjct: 399 LGASVGIA--CFPECGQSVEGLLRSADMAMYEAKRAGRQQYRFFS 441


>gi|312966728|ref|ZP_07780946.1| uncharacterized protein ydaM [Escherichia coli 2362-75]
 gi|312288192|gb|EFR16094.1| uncharacterized protein ydaM [Escherichia coli 2362-75]
          Length = 430

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 75/158 (47%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GLLN   F  I+  G        +  S++  D D FK IND +GH  GD+V+  L+
Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +    A  LA  +R  +  ++++IS  P     
Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--I 391

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429


>gi|296282724|ref|ZP_06860722.1| putative diguanylate cyclase [Citromicrobium bathyomarinum JL354]
          Length = 348

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 9/159 (5%)

Query: 101 SQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           ++ +R D L+GLLN       + SL S  E  S+V FD+D FK IND FGH  GD ++  
Sbjct: 182 AERARRDPLTGLLNRHGLEGVMKSL-SRGEVFSLVCFDLDGFKPINDRFGHAAGDDLLCE 240

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +++++         + R+GG+EF     G   Q A  +   +   +  +     +   + 
Sbjct: 241 VANRMQSALAEGQVLARIGGDEFLVLLPGQGAQAAETVIQAVLAKVSGAPYAADAKSLVE 300

Query: 218 ITISAGIAERCHKEPISTII---YRADQALYVAKKSGRN 253
           I ++AG A  C+ +  + I      AD+ALY AK++G+ 
Sbjct: 301 IGVTAGFA--CYPDDATNIAELHVLADRALYAAKRAGKG 337


>gi|158425595|ref|YP_001526887.1| putative diguanylate cyclase [Azorhizobium caulinodans ORS 571]
 gi|158332484|dbj|BAF89969.1| putative diguanylate cyclase [Azorhizobium caulinodans ORS 571]
          Length = 549

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 98/197 (49%), Gaps = 15/197 (7%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSY 125
           +I+  I LL+  + G++ +E  +S  R   L+  D L+GL N  +F   L          
Sbjct: 338 VIAGAIVLLVLALQGALRREEKMSA-RFENLATTDWLTGLPNRRSFDERLIAAARSTARS 396

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAA 184
              L+++  D+D FK +ND FGH  GD+V+  +S  L      P   V R GGEEFAA  
Sbjct: 397 AAPLALLMIDVDRFKVLNDRFGHGRGDEVLRQISQVLKACARRPDDMVARYGGEEFAAVL 456

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQ 242
            G+    AA +A  +R  +E++       P + +T+S G A      +    T++  AD 
Sbjct: 457 PGTDAAGAARVAEAMRAAVEHA----FPSPDMTVTVSIGAASGTLAPETETRTLLAAADA 512

Query: 243 ALYVAKKSGRNRVVCFS 259
           ALY AK  GRNRVV  S
Sbjct: 513 ALYEAKAQGRNRVVLAS 529


>gi|21115005|gb|AAM42987.1| response regulator [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66575430|gb|AAY50840.1| response regulator [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 349

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 85/179 (47%), Gaps = 19/179 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL ++Y  +  ++  D L+GL N         A I      ++ L ++  DIDYFK+ ND
Sbjct: 171 ELRLAYAAVEAIAMQDSLTGLANRRQLDVVLPAEIKRAKRTSQPLGVIMVDIDYFKRYND 230

Query: 145 NFGHPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            +GHP GD   K IA +        G      R GGEE     L  S  +AA+LA   R 
Sbjct: 231 YYGHPAGDLCIKAIANVLKNHTRRAGN--LAARYGGEEL--TVLLPSCDQAAVLAAAERI 286

Query: 202 I--IENSQINISSGPSIHITISAGIAERC--HKE-PISTIIYRADQALYVAKKSGRNRV 255
           +  I   QI     P  ++T+S G       +KE   S ++  AD ALY AK++GRNR 
Sbjct: 287 VESIRGLQIAHDDSPEGYLTVSVGAYSYSAFNKEVDASGLLKCADDALYAAKQAGRNRA 345


>gi|77164365|ref|YP_342890.1| two component diguanylate cyclase [Nitrosococcus oceani ATCC 19707]
 gi|254433277|ref|ZP_05046785.1| GGDEF domain protein [Nitrosococcus oceani AFC27]
 gi|76882679|gb|ABA57360.1| response regulator receiver modulated diguanylate cyclase
           [Nitrosococcus oceani ATCC 19707]
 gi|207089610|gb|EDZ66881.1| GGDEF domain protein [Nitrosococcus oceani AFC27]
          Length = 327

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 14/176 (7%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDN 145
           L  +  ++ QL+ +D L+G+ N   F  ++    ++       LS++  DID FK  ND 
Sbjct: 148 LEAANEQLRQLTSLDDLTGIANRRQFEVTIHQEFQRAMRNKTVLSLIMIDIDNFKVYNDI 207

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD  +  ++  L  V   P   + R GGEEFA     +  + A+ +A  LR+ +E
Sbjct: 208 YGHQTGDSCLRRVAAALDSVLKRPNDLLARYGGEEFAVILPETGSKGASNIAESLRQAVE 267

Query: 205 NSQI--NISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +I  + +S  ++ +T+S G+A    +   EP + +I  ADQALY +K +GRN+V
Sbjct: 268 ILKIPHSYASQNNLRVTVSLGVATLIPQRGDEP-TKLISIADQALYQSKHAGRNQV 322


>gi|53804274|ref|YP_114093.1| sensory box protein [Methylococcus capsulatus str. Bath]
 gi|53758035|gb|AAU92326.1| sensory box protein/GGDEF domain protein [Methylococcus capsulatus
           str. Bath]
          Length = 819

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 90/174 (51%), Gaps = 16/174 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I QL+  D L+GL N   F+  L            + S++F D+D FK +ND  GH VGD
Sbjct: 389 IEQLAYFDPLTGLPNRRLFLERLNQAIGESCVNGSRCSLLFVDLDRFKHLNDARGHTVGD 448

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAI-----LANDLRKIIENS 206
           +++  ++++L    G    V RLGG+EF     G  E+ E+A      +A +LR I++  
Sbjct: 449 QLLRKVAERLSEGVGRGGMVARLGGDEFVILLNGLDEEFESACRRTMDVAENLRVILQRP 508

Query: 207 QINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +SSG   ++T S G A      +    ++  AD A+Y AK SGRN V  ++
Sbjct: 509 FV-LSSGQH-YVTASIGTAIYPFDTDSADDLLKAADMAMYEAKASGRNTVRAYA 560


>gi|81301343|ref|YP_401551.1| diguanylate cyclase with GAF sensor [Synechococcus elongatus PCC
           7942]
 gi|81170224|gb|ABB58564.1| diguanylate cyclase with GAF sensor [Synechococcus elongatus PCC
           7942]
          Length = 421

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 11/194 (5%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ISSLGS 124
           +++  +   L +      +LK L ++  R+    RID L+ + N   F      +   G 
Sbjct: 219 VLLTQVAEQLSIAIAQSQLLKTLQVTNQRLQDQVRIDGLTQIPNRRRFDEYFNDVWLWGC 278

Query: 125 YNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAA 182
            +   ++++  D+DYFK  ND +GH  GD+V+  +   L  VV      V R GGEEF A
Sbjct: 279 RDHTPVALLLIDVDYFKTYNDFYGHLAGDEVLRKIGLLLNSVVLRATDLVARYGGEEFVA 338

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCH--KEPISTIIYR 239
               ++ + A  +A  L+  ++  QI  +  P +  +T+S GIA         ++ +I +
Sbjct: 339 VLPSTTLEGAQAVARRLQADLQRLQIPHNHSPVAAWVTVSIGIAVTIPTIDVALTDLIDQ 398

Query: 240 ADQALYVAKKSGRN 253
           AD+ALY AK +GRN
Sbjct: 399 ADKALYEAKSAGRN 412


>gi|313899584|ref|ZP_07833093.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2]
 gi|312955691|gb|EFR37350.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2]
          Length = 439

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 15/187 (8%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------- 129
            I ++LG ++    KEL  +       SR D L G  N  +   +L S  +K        
Sbjct: 256 NIKVVLGTMNDITEKELLKT-----SASR-DPLIGCFNRRSGDMTLVSTFQKFQNGEDFY 309

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +I+FFD+D FK++ND +GH +GD V+  + +Q+     +   + R GG+EF     G S+
Sbjct: 310 TIIFFDVDDFKKVNDRYGHDMGDYVLRHVCEQIEKEIRSSDMLFRWGGDEFLLICSGISK 369

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAK 248
           +        LR++IE+S   I  G  + +T+S G A     +      + RAD+++Y AK
Sbjct: 370 ENIYAYIERLRRLIESSDF-IFDGNRVQVTLSIGAAYYYKSDHDYQDALKRADRSVYKAK 428

Query: 249 KSGRNRV 255
            +GRN+V
Sbjct: 429 LAGRNKV 435


>gi|260773689|ref|ZP_05882604.1| GGDEF family protein [Vibrio metschnikovii CIP 69.14]
 gi|260610650|gb|EEX35854.1| GGDEF family protein [Vibrio metschnikovii CIP 69.14]
          Length = 411

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 77/167 (46%), Gaps = 22/167 (13%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+ L    A    L    +  +I   D+D+FK  ND +GH  GD V+  ++ +L +V 
Sbjct: 241 DRLTQLPARHALDLDLQRLGKNFTIAMVDVDHFKAFNDTYGHETGDDVLKLVASRLRLVP 300

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS--------------- 211
           G      R GGEEF     G + ++A      LR  IE+  + I                
Sbjct: 301 GNGR-AYRYGGEEFTLLFKGKTAEQAKPHLEWLRHDIEHYDLVIRDTDTRPANHQEGSKK 359

Query: 212 ----SGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRN 253
                  S+ ITIS GI +  H EP S + +  ADQALY AKK+GRN
Sbjct: 360 RKRHKASSVTITISIGICD-SHVEPTSKSALTLADQALYNAKKAGRN 405


>gi|207722275|ref|YP_002252711.1| signal transduction transmembrane (partial sequence c terminus)
           protein [Ralstonia solanacearum MolK2]
 gi|206587452|emb|CAQ18034.1| putative signal transduction transmembrane (partial sequence c
           terminus) protein [Ralstonia solanacearum MolK2]
          Length = 201

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 13/170 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----------KLSIVFFDIDYFKQIND 144
           +  RI+  +  D L+GLLN   F ++L +  E            L+++  D+D FK IND
Sbjct: 28  TVQRIAWDATHDVLTGLLNRRGFDATLRAQVEAHRGTRAAPRTPLALLMIDLDAFKAIND 87

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD V+  +++++V    T     RLGG+EFA        Q A   A+ +R  + 
Sbjct: 88  CYGHAAGDDVLRGIAERVVQNTRTQDHAARLGGDEFAVILPNCDLQTAVTFADRIRAALA 147

Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
              + +++G    I +S G+ E +      +  + R D A Y AK  GRN
Sbjct: 148 RQPV-LAAGARAQIALSQGVVELQADDADAAAFLARVDAACYRAKSEGRN 196


>gi|148980010|ref|ZP_01815831.1| sensory transduction/ GGDEF family protein [Vibrionales bacterium
           SWAT-3]
 gi|145961453|gb|EDK26757.1| sensory transduction/ GGDEF family protein [Vibrionales bacterium
           SWAT-3]
          Length = 440

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 79/155 (50%), Gaps = 20/155 (12%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS----DQLVVVFGTPMFVGRLGGEEF---- 180
           +S +  DID FK++ND FGH VGD VI  L+      + ++ G    VGR GGEEF    
Sbjct: 288 MSCLLLDIDDFKKVNDQFGHSVGDTVIRTLASIIKKHVKILNG---VVGRWGGEEFIVFF 344

Query: 181 ------AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC---HKE 231
                  A AL +SE +A+++   + +   N Q    +  S + ++S G+ + C      
Sbjct: 345 PKSVTCHATALSNSESQASVVGERICEEFRNHQFIGFNRKSFNTSVSIGVTDSCIIRTSN 404

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            ++ +I   D ALY AK +G+NRV   ++ E   C
Sbjct: 405 SLNNLIRVTDDALYQAKSNGKNRVSVNTECECAGC 439


>gi|118579233|ref|YP_900483.1| diguanylate cyclase [Pelobacter propionicus DSM 2379]
 gi|118501943|gb|ABK98425.1| diguanylate cyclase [Pelobacter propionicus DSM 2379]
          Length = 249

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 107/244 (43%), Gaps = 18/244 (7%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL--------SLVIISITISL 80
           IY    F    A ++ I+++F  Y  L      E  LV+ L         LV+    + L
Sbjct: 4   IYVDEMFVGEAAEIMSISDVFPEYRQLRTMGFREGRLVDLLHFDPLITRKLVLRVEGMRL 63

Query: 81  LLGYISGS--ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
            +G    +   ++ L  +Y  +  ++  D L+G  N  A        +    S    L++
Sbjct: 64  AMGASCAAHIRVRPLKSAYLHLRDMAHYDNLTGCFNRHAAGTVVRQEVERFSSLGLPLAL 123

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  D+D+FK+IND FGH  GD V+   +  +           R GGEEF     G+ ++E
Sbjct: 124 LMADLDHFKRINDTFGHTSGDDVLKSFASLIRQGLRRSDLFCRWGGEEFLILLRGTLKEE 183

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A  +A   R+ I  S +         +T+S G A      P+  +I  AD ALY AK+ G
Sbjct: 184 ALKIAERFRERI-ASALFPPFNERGAVTVSIGCACLPPGRPLERLIVDADCALYRAKQGG 242

Query: 252 RNRV 255
           RNRV
Sbjct: 243 RNRV 246


>gi|313500935|gb|ADR62301.1| Response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida BIRD-1]
          Length = 708

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 85/159 (53%), Gaps = 15/159 (9%)

Query: 107 DCLSGLLNHSAFISSLGS---YNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN   F  +       NE+     ++++ D+D FK+IND+ GH  GD+V+ +++
Sbjct: 281 DPLTGLLNRRGFYQAAEGALLRNERSDKAQALMYMDLDGFKRINDSLGHDAGDRVLRWVA 340

Query: 160 DQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +QL    G+   + R+GG+EF A   +L   EQ        L ++  + +++   G  + 
Sbjct: 341 EQLKDCLGSEALLARMGGDEFTALFDSLPYPEQAGRYAERLLERVSISHEVD---GLDVC 397

Query: 218 ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + +S GIA    C    +  ++  AD A+Y AK++GR +
Sbjct: 398 LGVSIGIATYPDCGAN-VEGLLRSADAAMYAAKQAGRQQ 435


>gi|229587759|ref|YP_002869878.1| hypothetical protein PFLU0183 [Pseudomonas fluorescens SBW25]
 gi|229359625|emb|CAY46467.1| conserved GGDEF domain protein [Pseudomonas fluorescens SBW25]
          Length = 335

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 2/130 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+ +  DID FK +ND +GH  GD+V+  +++    V       GR+GGEEFAA   G +
Sbjct: 206 LAFLLLDIDDFKDVNDTYGHLEGDQVLRRIAESGRGVLRRGDLFGRIGGEEFAAVLPGCA 265

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVA 247
            + A  +A  L K I+    +   G +  +TIS G+A     +  + ++  RAD A+Y A
Sbjct: 266 PEMALQVAERLGKEIQALSFSY-EGQAFSVTISQGLANLSEADSTLDSLFARADAAMYEA 324

Query: 248 KKSGRNRVVC 257
           K+ G+NRV+ 
Sbjct: 325 KRLGKNRVIA 334


>gi|227823533|ref|YP_002827506.1| putative transmembrane GGDEF/EAL domain protein [Sinorhizobium
           fredii NGR234]
 gi|227342535|gb|ACP26753.1| putative transmembrane GGDEF/EAL domain protein [Sinorhizobium
           fredii NGR234]
          Length = 669

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 82/168 (48%), Gaps = 20/168 (11%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK- 153
           +LS  D L+GL N  A    L  Y           +    D+D+FK+ ND +GH  GD+ 
Sbjct: 232 RLSNTDSLTGLDNRRAVDQKLRDYWSDWQKKGTSFAAFLIDVDFFKKYNDFYGHQEGDRC 291

Query: 154 ---VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-- 208
              V + L D +    G+   +GR GGEEF   A   + ++AA LA  +R  +EN  +  
Sbjct: 292 LVLVASALKDSIEPYNGS---IGRYGGEEFIVLARMETSEQAAELAETIRCGVENLALEH 348

Query: 209 -NISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
                G SI +T+S G A         +  +I+ AD+ALY AK SGRN
Sbjct: 349 GQRRDGMSI-VTVSVGAAFSRNQTGSKLERLIHEADRALYGAKASGRN 395


>gi|261342740|ref|ZP_05970598.1| signaling repeat/GGDEF domain/EAL domain protein [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315393|gb|EFC54331.1| signaling repeat/GGDEF domain/EAL domain protein [Enterobacter
           cancerogenus ATCC 35316]
          Length = 694

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 109/222 (49%), Gaps = 15/222 (6%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG--SILKELFISYNR-I 100
           F A+  L + G+   +    + V  LS++ I++ +S+L   +    S+L       NR +
Sbjct: 198 FPASTMLHHHGINGSWLAVLVSVIALSILGITLLVSILDARLQARTSLLASSLAEANREL 257

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDK 153
           +QL+  D L+ L N       LG    K        +++F D+D FK +ND +GH VGDK
Sbjct: 258 AQLALQDTLTRLPNRLLLEDRLGQAISKADREGRHFALMFMDLDGFKTVNDAYGHDVGDK 317

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  ++ +L+        + R+GG+EF   A      +AA LA+ L + I++     +  
Sbjct: 318 LLVAVTQRLLQPLKGQYTLARIGGDEFVLLAETDGPDDAASLASALVRAIDSP---FALE 374

Query: 214 P-SIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRN 253
           P  + +T+S GIA   H       +++ AD A+Y  K  GRN
Sbjct: 375 PYELVVTLSIGIALYPHDGKTDRELMFNADAAMYHTKHMGRN 416


>gi|330888691|gb|EGH21352.1| GGDEF domain-containing protein [Pseudomonas syringae pv. mori str.
           301020]
          Length = 359

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 115/232 (49%), Gaps = 19/232 (8%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL-VIISITISLLLGYISG-- 87
            S+FF  FI  V   A I+L          L  + V++  L  +  I+ +LL G ++   
Sbjct: 108 MSVFFVKFIDYVAAAALIWLIMWQ----TDLTAVGVDHAPLFYVFLISSTLLGGSLNATF 163

Query: 88  -SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVF--FDIDYFKQ 141
            S++ +   + +R  +LS  D L+   N  A ++SL    + ++K S+ F   D+D FK 
Sbjct: 164 LSLVMQTMAASDRYQKLSETDTLTNAPNRRALVASLDNALTSDDKSSLWFAMLDLDNFKS 223

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           INDN GH VGD V+   +  +    G   F GRLGGEEF       S   AA     +  
Sbjct: 224 INDNHGHDVGDNVLICFATLIKNTTGLVSF-GRLGGEEFGVML---SAANAADAIAAMDH 279

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           ++ ++Q + ++   +  + SAGIA     + ++ ++  AD+ LY AK+SGR 
Sbjct: 280 LLMHAQKDPTA--KMPYSFSAGIASLARAKNVNDLLKEADENLYHAKRSGRQ 329


>gi|298292470|ref|YP_003694409.1| diguanylate cyclase [Starkeya novella DSM 506]
 gi|296928981|gb|ADH89790.1| diguanylate cyclase [Starkeya novella DSM 506]
          Length = 634

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 8/178 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQINDN 145
           E   +  RI  L+  D L+GL N + F   L     +       +++  D+D FK++ND 
Sbjct: 454 ERHRAEARIFHLAHHDPLTGLANRTLFSQRLQEAIARARVGLPGALLLIDLDRFKRVNDE 513

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGHPVGD ++   +++L           RLGG+EFA    G+++ E A  A   R +   
Sbjct: 514 FGHPVGDALLIAAAERLRGCLREGDLAARLGGDEFAVIQAGAAQPEGA-RALGARLVATL 572

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                  G  + +  S G A     +    ++ +AD ALY AK  GR R V F + EN
Sbjct: 573 GAPYEIDGKHLDVRASVGTAVLGPDDDTQALMRKADVALYRAKDGGRARHVLFGE-EN 629


>gi|322418618|ref|YP_004197841.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M18]
 gi|320125005|gb|ADW12565.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M18]
          Length = 338

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 96/189 (50%), Gaps = 16/189 (8%)

Query: 87  GSILKEL---FISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFD 135
           G +L++L       NR +  L+  D L+G+ N   F   L S  ++       LS++  D
Sbjct: 146 GDLLEQLTSELAGKNRELEVLAHKDGLTGIANRRHFNEVLLSEIQRAVRNGRNLSLILCD 205

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAI 194
           ID+FK+ ND +GH  GDK +  + + L   F      V R GGEEFA     +S + A  
Sbjct: 206 IDHFKKFNDLYGHLAGDKCLQLVGELLRNSFKRAGEVVARYGGEEFAVILPDTSAELAGH 265

Query: 195 LANDLR-KIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSG 251
           LA  LR +++  S ++  S   + +T+S G+A    K    +   I  ADQALY +K++G
Sbjct: 266 LAERLRLELMGQSLLHAHSEHKV-VTMSIGVAGGLAKWGRDMEWYITTADQALYRSKEAG 324

Query: 252 RNRVVCFSD 260
           RNR+    D
Sbjct: 325 RNRITVGGD 333


>gi|218549020|ref|YP_002382811.1| RNase II stability modulator [Escherichia fergusonii ATCC 35469]
 gi|218356561|emb|CAQ89184.1| modulator of Rnase II stability [Escherichia fergusonii ATCC 35469]
 gi|325497442|gb|EGC95301.1| RNase II stability modulator [Escherichia fergusonii ECD227]
          Length = 663

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E  ++  R+  L+  D ++GL N +A    +      + N ++ IV+ D+D FK
Sbjct: 219 SGTDITEERVAQERLRVLANTDTITGLPNRNAIHELIDNAIVQTTNAQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA----LGSSEQEAAILA 196
           ++ND +GH  GD+++  ++  ++        + R GG+EF   A     G+ E  A+ + 
Sbjct: 279 KVNDAYGHMFGDQLLQAVALAILSCLDNDQTLARHGGDEFIVLAPDTSQGALEAMASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR       I + +G S+ I +S       H     ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRLPFRIGLIEVQTGCSVGIALSP-----LHGHDSDSLIRSADTAMYTAKEGGRGQFC 393

Query: 257 CFS 259
            FS
Sbjct: 394 VFS 396


>gi|157164324|ref|YP_001467550.1| YbaK [Campylobacter concisus 13826]
 gi|112801081|gb|EAT98425.1| diguanylate cyclase (GGDEF) domain protein [Campylobacter concisus
           13826]
          Length = 1361

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 81/157 (51%), Gaps = 6/157 (3%)

Query: 107 DCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+ L N     + L S      +K+++++ D+D FK INDNFGH +GDK +  +S+++
Sbjct: 843 DPLTKLPNRFLLYNKLNSLIQKNEQKIAVIYLDMDDFKSINDNFGHQIGDKFLVAISEKI 902

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             +F       R+GG+EF       +  E   +A ++ ++  + ++ I     +  + S 
Sbjct: 903 GAMFNGKNIFARIGGDEFVGVINYENLGEVYEIAQNMLRLASD-EVKIDE-LKLKASASV 960

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           GIA    +     ++ RAD A+Y AK SG+NR   F 
Sbjct: 961 GIALADSELGADDVLQRADWAMYQAKISGKNRSYTFD 997


>gi|30249662|ref|NP_841732.1| diguanylate cyclase/phosphodiesterase [Nitrosomonas europaea ATCC
           19718]
 gi|30139025|emb|CAD85611.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Nitrosomonas
           europaea ATCC 19718]
          Length = 1128

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 10/167 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148
           S  +++ L+  D L+GL N     S L         YN +++ ++ D+D FK +ND+ GH
Sbjct: 690 SEAQLAHLAHYDPLTGLPNRLLVQSRLHHAVERAQRYNLRVATLYIDLDRFKNVNDSLGH 749

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQ 207
           P+GD+++  L+++L         + RLGG+EF        +  E+AI+A  L  ++    
Sbjct: 750 PIGDELLIKLTERLKNRLREEDALARLGGDEFLLVMEDVKDPSESAIVAQTLIDLLATPF 809

Query: 208 INISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRN 253
           + + SG  I I  S GI+        +T +I  AD A+Y AKK GRN
Sbjct: 810 V-LPSGHEIFINASIGISLFPDDASNATELIQHADMAMYQAKKEGRN 855


>gi|117918765|ref|YP_867957.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117611097|gb|ABK46551.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 581

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 12/238 (5%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           H    YF +   +F+    F     +FY G   F  L    V  + +++ ++ ++L++ Y
Sbjct: 334 HPIAKYFLLGHCLFVG---FSGLAVMFYKGRAEFSYLSSHGV-GVGIMLEALVLALIIAY 389

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ISSLGSYNEK-LSIVFFDID 137
               +L+E+  S   +   +  D L+ L N   F      I    S  ++ ++++  DID
Sbjct: 390 -RIRLLEEIKASQEELKYQAATDSLTHLFNRRHFHKEAQRIYMQASVTQQPMAVIICDID 448

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK++ND +GH +GD+VI  ++  L         V R GGEEF       S  EA   A 
Sbjct: 449 LFKRVNDKYGHLMGDQVIIDIATTLKQHARKCDIVARYGGEEFIMLLHDVSLTEAHQCAE 508

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +R  +        +  +  +T+S G+A      P+   I  AD ALY AK  GRN V
Sbjct: 509 RIRSAVAELSFMAETQEAFTVTLSLGVAAVDFVHPLEHAIKLADDALYRAKHQGRNNV 566


>gi|322640804|gb|EFY37453.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
          Length = 674

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 390

Query: 257 CFS 259
            FS
Sbjct: 391 VFS 393


>gi|152995706|ref|YP_001340541.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
 gi|150836630|gb|ABR70606.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
          Length = 777

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 91/185 (49%), Gaps = 13/185 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSI 131
           +L L Y S  +    F   + I+    ID L+GLL+        +  I S    +++L+ 
Sbjct: 316 ALFLAYYSRKLSLTYFSMLDSINNRIEIDELTGLLSRYQIQLELNELIVSCQEKDKQLAA 375

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  D+D+FK IND FGH +GDK++  +S +L  +      +G LGG+ F    + S +Q 
Sbjct: 376 LILDLDHFKTINDAFGHELGDKLLVNVSKRLASILPDDAVIGYLGGDAFLVLLVQSDDQG 435

Query: 192 AAIL---ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVA 247
             +L   A DL  I + SQ     G ++ I  S G+A          T+I  AD A+Y A
Sbjct: 436 VPVLDVFAKDL--IQKVSQSYFVDGLTLDIGCSIGVAMYPEFGTDAVTLIKNADMAVYQA 493

Query: 248 KKSGR 252
           K +GR
Sbjct: 494 KTAGR 498


>gi|150390686|ref|YP_001320735.1| diguanylate cyclase/phosphodiesterase [Alkaliphilus metalliredigens
           QYMF]
 gi|149950548|gb|ABR49076.1| diguanylate cyclase/phosphodiesterase [Alkaliphilus metalliredigens
           QYMF]
          Length = 716

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 7/166 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           I  ++  D L+ L N    +  L    ++N   +I+  D+D FK+IND  GH  GDKV+ 
Sbjct: 283 IEHIAYHDDLTNLPNRRMLVEKLELEFTHNRSGAIMLLDLDNFKEINDTLGHVYGDKVLK 342

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPS 215
            +++ L+ + G  + V RLGG+EF    L   E++   + N  RK+I+  S   +     
Sbjct: 343 KVTEALLHIKGENLVVSRLGGDEF--LILIKEEEDILKIENYARKVIDLFSNKLLVEDDE 400

Query: 216 IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +++T S GIA    +   +S +I  AD A+Y  K  G+N  + F++
Sbjct: 401 VYLTCSIGIALYPSNSNSVSQLIMNADMAMYGVKGFGKNNYMFFNE 446


>gi|301059424|ref|ZP_07200345.1| putative Response regulator PleD [delta proteobacterium NaphS2]
 gi|300446460|gb|EFK10304.1| putative Response regulator PleD [delta proteobacterium NaphS2]
          Length = 312

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 88/181 (48%), Gaps = 20/181 (11%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIN 143
           K L  +Y +I  LS  D L+G  N        S  IS    Y   +S+V  DID+FK+IN
Sbjct: 129 KSLKDAYEKIRLLSITDKLTGCYNRTYMDEYLSREISRATRYLRPISLVMTDIDHFKRIN 188

Query: 144 DNFGHPVGDKV----IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           D++GH  GD +    + ++ + L        ++ R GGEEF      +  + A   A  L
Sbjct: 189 DDYGHQAGDLILKNFVGWIKESLR---NDVDWIARYGGEEFLIVLPETDFESAMWSAERL 245

Query: 200 RKIIENSQINISSGPSIHITISAGI-----AERCHKEPISTIIYRADQALYVAKKSGRNR 254
           RK + +  +       I IT S G+     +   +  P  ++I +AD++LY AKK GRNR
Sbjct: 246 RKSV-SENVTAYEDKDIRITASFGVVGFKPSAGNNTFPHESMIDKADKSLYQAKKEGRNR 304

Query: 255 V 255
           +
Sbjct: 305 I 305


>gi|326317066|ref|YP_004234738.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373902|gb|ADX46171.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 247

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 9/165 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +LS  D L+GL N   F       I  +    E   ++  DID FK++ND  GH  GD
Sbjct: 41  LCELSLKDPLTGLANRRHFRTVLEREIDRVTRAGEAALLLMLDIDNFKRVNDTHGHMAGD 100

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L         + R GGEEFA            ++A  +R+ +E + + IS 
Sbjct: 101 IVLQSIARTLSRCVRPMDTLSRYGGEEFAVVLPACQAGFGKVVAERIRRAVERTPVRISP 160

Query: 213 GPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRV 255
              +++T+S G A        +T+++  RAD  LY AK +GRNRV
Sbjct: 161 TVELNVTVSIGGAFALQWIRSTTLLWTERADSQLYKAKLAGRNRV 205


>gi|239997118|ref|ZP_04717642.1| GGDEF domain protein [Alteromonas macleodii ATCC 27126]
          Length = 518

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 77/167 (46%), Gaps = 20/167 (11%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           SR D L+ L N  A+   L +   K       L++   DID+FK IND FGH  GDK + 
Sbjct: 353 SRTDPLTRLPNRQAYNERLEAAFTKFKENGDLLAVAVVDIDHFKSINDRFGHAAGDKTLQ 412

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-- 214
            +S  L        F+ R GGEEF    L    Q A     D+ K +   +  +++ P  
Sbjct: 413 VVSKFLKQSLSENDFIARWGGEEF--VMLLPQAQMA-----DIDKKLNEVRTKLAAMPFK 465

Query: 215 --SIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVC 257
                + I+A     C    +   T+  RAD+ LY AK++GRN VV 
Sbjct: 466 FKQEKVKITASFGATCFNDNDTTETVFERADEYLYKAKRNGRNLVVT 512


>gi|218463161|ref|ZP_03503252.1| putative sensory box/GGDEF family protein [Rhizobium etli Kim 5]
          Length = 521

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 79/164 (48%), Gaps = 12/164 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFF--DIDYFKQINDNFGHPVGDKV 154
           +LS  D L+G+ N  A    L        +E    V F  D+D+FK+ ND +GH  GD+ 
Sbjct: 225 ELSNTDYLTGINNRRALDRRLDECWAAWKDEGRDFVVFLIDVDFFKRFNDRYGHQEGDRC 284

Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +A +++ L  VV  +   +GR GGEEF           A  LA  +R  +E   I     
Sbjct: 285 LAVIANLLKAVVESSGGMIGRYGGEEFIVVMPAEPPSVAMSLAERIRMEVEFLAIAHDER 344

Query: 214 P--SIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
           P  S  +T+S G+A       E +  I+  AD ALY AK SGRN
Sbjct: 345 PDDSAIVTVSIGVAFTSEDVGEKVERIVREADLALYNAKASGRN 388


>gi|157145666|ref|YP_001452985.1| hypothetical protein CKO_01413 [Citrobacter koseri ATCC BAA-895]
 gi|157082871|gb|ABV12549.1| hypothetical protein CKO_01413 [Citrobacter koseri ATCC BAA-895]
          Length = 410

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 76/162 (46%), Gaps = 19/162 (11%)

Query: 107 DCLSGLLN-----------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           D L+GLLN           H+  +S    Y    S++  D D FK IND +GH  GD+V+
Sbjct: 256 DALTGLLNRRQFYLLTEQNHTPHLSMTMDY----SLLLIDTDRFKSINDLYGHLKGDEVL 311

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L+  L         V R GGEEF      +S + A  LA  +R  +  +++ I   P 
Sbjct: 312 CALARTLEARARKGDLVFRWGGEEFVLLLPRTSLEVALNLAESIRAAV--AKVCIPGLPR 369

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              T+S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 370 F--TVSIGVARHESNESIDELFKRVDDALYKAKNDGRNRVLA 409


>gi|254254953|ref|ZP_04948270.1| hypothetical protein BDAG_04275 [Burkholderia dolosa AUO158]
 gi|124899598|gb|EAY71441.1| hypothetical protein BDAG_04275 [Burkholderia dolosa AUO158]
          Length = 669

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 17/186 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNE-----KLSIVFFDID 137
           SG  + +  ++  R+++L+  D L+GL N  A    I +L S        ++ I+F D+D
Sbjct: 220 SGIDITDERLAERRLTELANTDVLTGLPNRHAISERIQTLISRENDGTRGQVGILFLDLD 279

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE----FAAAALGSSEQEAA 193
            FK++ND++GH  GD+++  +S  +     +   + RLGG+E    F  A     E  A 
Sbjct: 280 NFKRVNDHYGHITGDRLLQDVSSIIAGCLPSGATLARLGGDEFLVLFEQATRALLEATAQ 339

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           I+   LR  I    + + +  SI I +        H + + T+I  AD A+YVAK++G++
Sbjct: 340 IILERLRTPIHLGLMEVYTSCSIGIAMHP-----QHGDSLETLIRSADTAMYVAKEAGKH 394

Query: 254 RVVCFS 259
               FS
Sbjct: 395 TYRVFS 400


>gi|117620650|ref|YP_857764.1| GGDEF family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117562057|gb|ABK39005.1| GGDEF family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 468

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 17/163 (10%)

Query: 101 SQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           S+ ++ D L+GL N       +  L   +    +   DID FKQIND +GHPVGD V+  
Sbjct: 312 SEKAQRDALTGLYNRRYMDTLLVELHQQHTPYVLAIIDIDNFKQINDKYGHPVGDSVL-- 369

Query: 158 LSDQLVVVFGTPMFVG-----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
              +     G+ +  G     R GGEE  A       +EA       R+ +         
Sbjct: 370 ---RRTASLGSKLLEGKATLCRFGGEELVAIFEQGRLKEAHQQMEQWRRAMGKQNWR--- 423

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            P + +T S G+AE     P + ++ +AD ALY AK+ G++R+
Sbjct: 424 EPGLTVTFSGGLAEALDAPP-AQVLAQADAALYRAKQEGKDRL 465


>gi|32455652|ref|NP_862134.1| hypothetical protein pSV2_p041 [Streptomyces violaceoruber]
 gi|28797278|gb|AAO50125.1| hypothetical protein [Streptomyces violaceoruber]
          Length = 175

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 8/134 (5%)

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
           + S+ + +++V  D D+FK +ND FGHP GD V+A    +L    G    VGRLGG+EFA
Sbjct: 14  MASHGDDMAVVMVDADHFKAVNDGFGHPAGDAVLAAFGARLTAWAGPRASVGRLGGDEFA 73

Query: 182 AAALGSSEQEAAILANDLRKIIE--NSQINISSGPSIHITISAGIA--ERCHKEPISTII 237
                  E  A IL   L +++   ++ + +  G ++ +  S G A         +S + 
Sbjct: 74  VVL----ELPAGILEQRLAQLVRMLHTPVVLEDGRTVDVAASVGAATPHAAGSRDLSLLQ 129

Query: 238 YRADQALYVAKKSG 251
             AD ALY  K +G
Sbjct: 130 RAADAALYDGKHTG 143


>gi|82701763|ref|YP_411329.1| diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis
           ATCC 25196]
 gi|82409828|gb|ABB73937.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosospira multiformis ATCC 25196]
          Length = 699

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 25/181 (13%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S  RI  L+  D L+GL N + F       I +   Y  +L+++F D+D FK IND+ GH
Sbjct: 252 SQERIEYLAHYDLLTGLPNRALFTDRMRIAIENASRYAFRLALLFVDLDRFKLINDSLGH 311

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF---------AAAALGSSEQEAAILANDL 199
            +GDK++  +++++         V RLGG+EF         A  A   +E+  A+L+   
Sbjct: 312 AIGDKLLKAVAERMQSTVRQADTVSRLGGDEFVVLLGRIHTATEAARVAEKLIAVLSQPY 371

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  IE  ++ +++   I I   +G       + +++++  AD ++Y AK  GRNR   +S
Sbjct: 372 Q--IEQHELLLTASVGISIYPDSG-------KDVNSLMRNADVSMYSAKGQGRNRYQFYS 422

Query: 260 D 260
           +
Sbjct: 423 E 423


>gi|83593243|ref|YP_426995.1| response regulator receiver modulated diguanylate cyclase
           [Rhodospirillum rubrum ATCC 11170]
 gi|83576157|gb|ABC22708.1| response regulator receiver modulated diguanylate cyclase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 519

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 73/138 (52%), Gaps = 8/138 (5%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS +  D+D+FK+IND  GH  GD ++  L+D L         + R+GGEEFA     +S
Sbjct: 383 LSGLMIDLDHFKRINDTQGHAAGDAILRTLADTLRESLREIDVIARVGGEEFAILLPDTS 442

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYV 246
              A  +   LR   +  Q     GP   +TIS GI+   H E   +  ++ RAD ALY 
Sbjct: 443 LTAAHEVGERLRLSCQIPQ--PVGGP---VTISVGIST-LHPEDRGLGDMLSRADDALYR 496

Query: 247 AKKSGRNRVVCFSDIENN 264
           AK++GR+RV    D E+N
Sbjct: 497 AKRNGRDRVEIADDSEDN 514


>gi|34557894|ref|NP_907709.1| hypothetical protein WS1568 [Wolinella succinogenes DSM 1740]
 gi|34483612|emb|CAE10609.1| MLL1446 PROTEIN [Wolinella succinogenes]
          Length = 562

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 83/156 (53%), Gaps = 8/156 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+GLLN    +  +  + EK    ++ FD+D+FK+IND +GHP+GD+V+      L  
Sbjct: 409 DSLTGLLNRHGVLHFIQEHLEKEGFGVLIFDLDHFKKINDTYGHPIGDEVLRGFGLILSE 468

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAIL---ANDLRKIIENSQINISSGPSIHITIS 221
              +   +GR GGEEF    L  S +E+++L   A  +R+ ++ +  +     +  +++S
Sbjct: 469 GQRSEDAIGRWGGEEF---ILVLSTKESSVLHSIAERVRQRLKATAFSDGCQGTFRVSVS 525

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            G A     E    +  RAD+ LY AK  GR++ + 
Sbjct: 526 IGGAILREGESFEGVYERADKNLYQAKALGRDQSIV 561


>gi|325292659|ref|YP_004278523.1| Response regulator pleD [Agrobacterium sp. H13-3]
 gi|325060512|gb|ADY64203.1| Response regulator pleD [Agrobacterium sp. H13-3]
          Length = 456

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 11/179 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           + L ++     +L+ +D L+GL N     + L             +SI   DID FK +N
Sbjct: 278 EHLRLNLQHTMELAIVDGLTGLNNRRYLDNHLKILFDRAAVRGRPISICMTDIDRFKLVN 337

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGD+V+   + ++           R GGEEF      +  + A  +A  LR II
Sbjct: 338 DTYGHDVGDEVLREFAARIRSTVRGADLACRYGGEEFVVVMPDTPMELATSVAERLRAII 397

Query: 204 ENSQINISS-GPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           E+   ++ S    + IT S GIA        P   ++ +AD+ALY AK +GRNRVV  +
Sbjct: 398 EDKPFHVRSIDRELSITASLGIATSSGAFGAP-DELLKQADRALYEAKHTGRNRVVAAA 455


>gi|304398740|ref|ZP_07380611.1| diguanylate cyclase [Pantoea sp. aB]
 gi|304353687|gb|EFM18063.1| diguanylate cyclase [Pantoea sp. aB]
          Length = 527

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 83/153 (54%), Gaps = 9/153 (5%)

Query: 107 DCLSGLLNHSAF--ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+ L N   F  +++      + S++  DID+FK+IND +GH  GD V+  L+  L  
Sbjct: 365 DPLTSLCNRRGFSVLAARSDSEHEQSVIAIDIDHFKKINDWYGHDAGDAVLVNLAALLRQ 424

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAG 223
           +      V R GGEEF      ++ ++AA  A  +R++     ++I++ P +  +TISAG
Sbjct: 425 LSRIGDIVSRFGGEEFILLLPHTTLEDAARTAERIREV-----VSITTFPFAGTVTISAG 479

Query: 224 IAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
           +A           ++ RAD+ALY AK +GRN V
Sbjct: 480 VASGAELAGNREAVLRRADEALYEAKAAGRNTV 512


>gi|302524637|ref|ZP_07276979.1| predicted protein [Streptomyces sp. AA4]
 gi|302433532|gb|EFL05348.1| predicted protein [Streptomyces sp. AA4]
          Length = 428

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 12/164 (7%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D  +GL     + +    Y E+       + ++  D+D+FK IND +GHP GD V+ 
Sbjct: 260 ARTDVTTGLATKRWWRTVTERYLERARANQDSVGVLLLDLDHFKAINDTYGHPTGDLVLR 319

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPS 215
            ++  L          GR GGEEFA A     S +    +A+ +R+ I    + +    S
Sbjct: 320 EIALSLRDEVREQDVCGRWGGEEFAIALPDIPSAEHLGHIADRIRRRIPQVVVALPDQDS 379

Query: 216 I--HITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   +T+S G A     H   +  ++  AD ALY AK++GRNRV
Sbjct: 380 VISDLTVSIGCALYPAEHLASVDDVLVAADAALYRAKQAGRNRV 423


>gi|300312078|ref|YP_003776170.1| hypothetical protein Hsero_2767 [Herbaspirillum seropedicae SmR1]
 gi|300074863|gb|ADJ64262.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 534

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 9/169 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ +L R D L+G LN      SL          +  L +   D+D FK+IND  GH  G
Sbjct: 359 QMGELVREDQLTGSLNRRGMDESLDREITNALRRDTPLCVALLDLDDFKRINDTHGHATG 418

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  +   +         + R GGEEF      ++ Q+A  +   +++ +   +I + 
Sbjct: 419 DEVLVHMVQVIRETLRKLDVIARFGGEEFLVLMPETAPQDAVQIITRVQREL-TKRIFMH 477

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
               + IT SAG+A     E  + ++ RAD ALY AK +G+NR+V F+D
Sbjct: 478 ESQRLLITFSAGVAVYHPGESQADLLKRADVALYKAKNAGKNRIV-FAD 525


>gi|254457256|ref|ZP_05070684.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207086048|gb|EDZ63332.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 574

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 96/206 (46%), Gaps = 18/206 (8%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------S 116
           I  E  + V+    IS L       + KEL    + +   +  D L+GL N        S
Sbjct: 109 IYQEKKAYVLFDTDISKL-----KKVQKELREQKDILHHQAHHDALTGLPNRILFNDRLS 163

Query: 117 AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
             I     +NE L++ F D+D FKQIND+ GH  GD V+   S +          + RLG
Sbjct: 164 QGIKKSKRHNEILALFFIDLDQFKQINDSLGHDTGDVVLKEASRRFSSKIREEDTLSRLG 223

Query: 177 GEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHK-EPI 233
           G+EF+  A G  E  EA++LAN   K IE     I  G  ++++T S GI+      +  
Sbjct: 224 GDEFSVIAGGLKEASEASVLAN---KFIECMAEPIVVGAHTLYLTCSIGISFYPQDGQSA 280

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
             ++  AD A+Y AK  GRN    +S
Sbjct: 281 ENLLKYADVAMYKAKDEGRNNYQTYS 306


>gi|149375341|ref|ZP_01893112.1| serine/threonine kinase with two-component sensor domain
            [Marinobacter algicola DG893]
 gi|149360377|gb|EDM48830.1| serine/threonine kinase with two-component sensor domain
            [Marinobacter algicola DG893]
          Length = 1684

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 50/134 (37%), Positives = 72/134 (53%), Gaps = 6/134 (4%)

Query: 127  EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF--GTPMFVGRLGGEEFAAAA 184
            + LS+V  D+D+FK  NDN+GH +GD+ +  +++ L       T M V R GGEEF    
Sbjct: 1546 QPLSVVMLDVDHFKHFNDNYGHQMGDECLIRVAETLQAQLQRSTDM-VARYGGEEFILIL 1604

Query: 185  LGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERC--HKEPISTIIYRAD 241
              + E  A  +A + R  IE   I +  S     IT+S G A      K  +  +++ AD
Sbjct: 1605 PNTDENGAIQVAENARVAIEALDIRHDHSTARDCITVSVGCATIVPDDKSSLEELVFAAD 1664

Query: 242  QALYVAKKSGRNRV 255
             ALY AK+SGRNR+
Sbjct: 1665 AALYKAKESGRNRI 1678


>gi|121608637|ref|YP_996444.1| diguanylate cyclase [Verminephrobacter eiseniae EF01-2]
 gi|121553277|gb|ABM57426.1| diguanylate cyclase [Verminephrobacter eiseniae EF01-2]
          Length = 352

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 10/181 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFK 140
           L G  +     E F  +     +SR D    +   +A +       + L++V  DID+FK
Sbjct: 161 LTGLFNRKTFDEQFSRHALHGLVSRPDAAPPVFACNAHVLPGEPVQQWLAVV--DIDHFK 218

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND FGH  GD+V+  +++ L   F +   V R GGEEF      ++   A  + N  R
Sbjct: 219 QVNDRFGHLYGDEVLILIANILRNSFRSHDRVFRFGGEEFVVLLRSTTLGTAHKVFNRFR 278

Query: 201 KIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++         P +  +T+S G        P+  I+ +ADQALY AK+ GRN+ VCF 
Sbjct: 279 MAVQEYPF-----PQVGQVTVSLGFVSTARGAPVE-ILGQADQALYYAKEHGRNQ-VCFY 331

Query: 260 D 260
           D
Sbjct: 332 D 332


>gi|56750182|ref|YP_170883.1| hypothetical protein syc0173_c [Synechococcus elongatus PCC 6301]
 gi|56685141|dbj|BAD78363.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 712

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 3/129 (2%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            E L+++F D+D FK INDNFGH VGD+V+  ++ ++         + RL G+EF     
Sbjct: 318 QEMLAVIFIDLDRFKDINDNFGHEVGDRVLVEVAQRIRQSVRQSDLIARLSGDEFVVILP 377

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQAL 244
            +  Q AA LA  L++ I    I I    SI +T S GI+      + +  +I +AD A+
Sbjct: 378 NTDAQGAATLAQKLQQQI-TPPIAIGDR-SIQLTTSLGISLFPVDGDDLEILIKKADTAM 435

Query: 245 YVAKKSGRN 253
           Y  K+ GR+
Sbjct: 436 YSIKEGGRD 444


>gi|109896943|ref|YP_660198.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109699224|gb|ABG39144.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
          Length = 325

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 65/126 (51%), Gaps = 5/126 (3%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           K  ++  D+D FK+IND  GH  GD V+A  S  +  +  +   + R GGEEF     GS
Sbjct: 198 KACLLLIDLDEFKKINDQLGHACGDGVLAQTSALIEHMLTSEQHLYRFGGEEFVVLTDGS 257

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
            EQ A  L   +R+ + +          +HIT+S GIAE    E     + RAD A+Y A
Sbjct: 258 LEQ-AITLGESIRQAVNDFPFE----QGLHITVSTGIAEYQFDETEFEWLGRADTAMYQA 312

Query: 248 KKSGRN 253
           K +GR+
Sbjct: 313 KSAGRD 318


>gi|297569753|ref|YP_003691097.1| diguanylate cyclase with GAF sensor [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925668|gb|ADH86478.1| diguanylate cyclase with GAF sensor [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 363

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 11/169 (6%)

Query: 99  RISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +  Q +  D L+G+ N        H     +L S N   S++  DID+FKQINDN+GH  
Sbjct: 195 KAQQEAMHDELTGIYNRRFLFDYAHKELCKNLRS-NAAFSLMLLDIDHFKQINDNYGHLY 253

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  ++  L         + R GGEEFA     ++   A  L   LR  +E   I  
Sbjct: 254 GDQVLRDMATTLKFKIRQSDVLARYGGEEFAVLLPNTAANAAFNLGEKLRLEVEKKGITP 313

Query: 211 SSGPSIH-ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                +  +T++ G++        +  +   ADQ LY  K +GRNR V 
Sbjct: 314 PGKTQLEKMTVTVGLSSFPADSNSLDQLFSVADQRLYKGKSAGRNRTVA 362


>gi|241766338|ref|ZP_04764225.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii
           2AN]
 gi|241363525|gb|EER58974.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii
           2AN]
          Length = 456

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 86/166 (51%), Gaps = 12/166 (7%)

Query: 103 LSRIDCLSGLLNHSAFIS----SLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N +AF      SL    E+   ++++F D+D FK +ND  GH  GD+V+
Sbjct: 288 LANHDSLTGLYNRAAFQGQLELSLARVREQGGAVALLFIDLDGFKLVNDQEGHRAGDEVL 347

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGP 214
             ++ +L         V RLGG+EF          E   L    R+IIE   Q  +  G 
Sbjct: 348 RIVAQRLGRAVREGDTVARLGGDEFLVMLDNDVSPEDPHLIG--RRIIEALHQPMVVDGR 405

Query: 215 SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++HI  S G+A     E  I  ++ RADQA+Y AK++G+   +C++
Sbjct: 406 NLHIGASIGVAMHPPLEGDIDVLMSRADQAMYAAKRNGKG-CLCYA 450


>gi|225871868|ref|YP_002753322.1| PAS domain S-box/GGDEF/EAL domain protein [Acidobacterium
           capsulatum ATCC 51196]
 gi|225794249|gb|ACO34339.1| PAS domain S-box/GGDEF/EAL domain protein [Acidobacterium
           capsulatum ATCC 51196]
          Length = 763

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 13/166 (7%)

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GL N ++        ++   +   +++++  D+D FK INDN GH +GD  + 
Sbjct: 318 ARHDPLTGLANRASMEDAVQQALAGADANGSQVAMICMDLDQFKWINDNHGHTIGDGFLR 377

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS-SGP 214
             + +L      P  +GR+GG+EF       SSEQ+A   A  L ++++     +   G 
Sbjct: 378 AFAQRLKTAVTAPDLLGRVGGDEFLLLLRNVSSEQDA---AERLERVLKTLDKPLEVEGH 434

Query: 215 SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++  ++SAG+A   C     + +   AD ALY AK+ GR++   +S
Sbjct: 435 TLRPSVSAGVAIYPCDSAHAADLRRHADHALYRAKEMGRDQYQFYS 480


>gi|254523661|ref|ZP_05135716.1| Two component regulator three Y motif family [Stenotrophomonas sp.
           SKA14]
 gi|219721252|gb|EED39777.1| Two component regulator three Y motif family [Stenotrophomonas sp.
           SKA14]
          Length = 987

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 51/159 (32%), Positives = 76/159 (47%), Gaps = 9/159 (5%)

Query: 104 SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+ L N   F  +L             L +V  DID+FK +ND   H +GD V+ 
Sbjct: 826 AREDALTRLANRRGFDETLARDFARSQRSGHPLCLVVLDIDHFKDVNDRHSHSIGDAVLV 885

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++  +           R GGEEFA     +  +EAA L   LR +  +   + +  P +
Sbjct: 886 EVARLIAAASRDSDLPARTGGEEFALLLNDTRLEEAAQLCARLRGLFHDHP-DWAGVPGL 944

Query: 217 HITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNR 254
            +T SAG+ E    +    ++Y RAD+ALY AK  GR+R
Sbjct: 945 RVTFSAGLVELDADDRTPALLYQRADRALYRAKSDGRDR 983


>gi|145224404|ref|YP_001135082.1| diguanylate cyclase [Mycobacterium gilvum PYR-GCK]
 gi|145216890|gb|ABP46294.1| diguanylate cyclase [Mycobacterium gilvum PYR-GCK]
          Length = 358

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 11/159 (6%)

Query: 104 SRIDCLSGLLNHSAFISS----LGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           S  D L+GL N   F  S    L +  ++    L++   D+D FKQIND  GH  GD+++
Sbjct: 194 SHTDPLTGLRNRRGFYRSVRRLLRAAPDRDLNFLTVAMIDLDRFKQINDTRGHATGDRLL 253

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +S  L         VGR+GGEEF  A   + + +A  LA  LR  I ++   I++   
Sbjct: 254 VSISGCLCHCARGEAVVGRVGGEEFLIAE-ATRDDDAEALAERLRLAIASTSWGITASVG 312

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +      G A+   +E +  +I  AD A+Y AK+SG N+
Sbjct: 313 VACRRLNGDADT--RELLGDLIEAADSAMYEAKRSGGNQ 349


>gi|332702569|ref|ZP_08422657.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552718|gb|EGJ49762.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 684

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 15/173 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           E+  S  ++   +  D L+GL N        +  ++ +    +K++++F D+D FK IND
Sbjct: 245 EIKASQEKVRHQAHHDVLTGLPNRLLLKDRLATSLTHMARSGQKVALLFMDVDNFKHIND 304

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKI 202
           + GHP+GD ++  ++ +L  V      V RLGG+EF     AL   E E   +A  +R +
Sbjct: 305 SLGHPLGDLLLQAVAARLKEVMRDDDTVARLGGDEFVILVEAL---ESENLAIATAMR-L 360

Query: 203 IENSQINIS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           +E  ++     G ++ +T S GIA      +   T+I  AD A+Y AK+ GRN
Sbjct: 361 LEAFRVPFHIKGHALTVTPSVGIALYPDDGDDAETLIKNADMAMYRAKEKGRN 413


>gi|327479709|gb|AEA83019.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 376

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 104/250 (41%), Gaps = 29/250 (11%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL----------G 83
            F++F+   IFI    L ++       L+Y L   +    +++  S+LL          G
Sbjct: 117 MFAVFLPPKIFIRYASLAFLSFVGLAALDYYLERPMDTTALALQASVLLVTLIWMCLFAG 176

Query: 84  YISGSILKELFISY-------------NRISQLSRIDCLSGLLNHSAFIS------SLGS 124
           ++     +     Y              ++  L+  D L+GL N   F+       S   
Sbjct: 177 HVYRLRQRMRQRRYALQAHQDTLRGMMRQLEDLASTDELTGLYNRRRFLRIAEGDLSRLR 236

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
              +  +   D+D+FK+IND  GH  GD+V+   +            + R GGEEF    
Sbjct: 237 KGHQSGLALIDLDHFKRINDIHGHATGDRVLQTFAKVARSCLRDDDVLARYGGEEFVLLL 296

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +  ++       LR+   +++   +   + H+++S G+      + +   + RAD+AL
Sbjct: 297 PETDAEQFRACCERLREAFASAEPEDAEIAAGHLSLSIGLTLLNAGDELDAALQRADEAL 356

Query: 245 YVAKKSGRNR 254
           Y AK++GRNR
Sbjct: 357 YRAKRAGRNR 366


>gi|325519720|gb|EGC99040.1| diguanylate cyclase [Burkholderia sp. TJI49]
          Length = 229

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 78/161 (48%), Gaps = 13/161 (8%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G  N S F     +         E LS++  D+D+FK  ND +GH  GD  +  ++
Sbjct: 69  DGLTGAFNRSHFNDRFHTLFLQARRQREPLSLLMVDVDHFKAYNDAYGHVKGDACLVAIA 128

Query: 160 DQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             L  V   P   V R GGEEFA     +  + A I+A + R+ +    + +   P   +
Sbjct: 129 HALAGVVRRPTDLVARYGGEEFAIVLPNTDARGARIVAEEARQAVLRLDL-VMPAPEGRV 187

Query: 219 TISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256
           ++S G A     + +ST   +I  AD ALY AK  GR+RVV
Sbjct: 188 SVSVGCAT-VSSDALSTSDALIEAADAALYRAKADGRDRVV 227


>gi|323703953|ref|ZP_08115582.1| diguanylate cyclase [Desulfotomaculum nigrificans DSM 574]
 gi|323531088|gb|EGB20998.1| diguanylate cyclase [Desulfotomaculum nigrificans DSM 574]
          Length = 465

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 16/166 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVG 151
            +++Q + +D L+G +N   F    + L + NE     S++  D D FK IND FGH +G
Sbjct: 307 EKLAQAATVDFLTGAINRREFSRLFAELLAKNEPQAVHSVMALDFDSFKTINDTFGHAIG 366

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+ +         V      V R GG+EF      +    A I+A  +R    N    I+
Sbjct: 367 DECLKTFVQAAKDVIRPTDSVSRFGGDEFVLLLPYTPRAGAKIVAEKIR----NRLKEIA 422

Query: 212 SGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255
           + P    TIS G+AE   K+ ++   ++  ADQALY+AK+ G+NRV
Sbjct: 423 NPP---FTISIGVAE-WPKDGMTEKDLLASADQALYMAKEKGKNRV 464


>gi|307300260|ref|ZP_07580040.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti
           BL225C]
 gi|307321137|ref|ZP_07600541.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83]
 gi|306893212|gb|EFN23994.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83]
 gi|306904426|gb|EFN35010.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti
           BL225C]
          Length = 664

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 12/164 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +LS  D L+GL N  A    L  Y        +  + +  D+D+FK+ ND +GH  GD+ 
Sbjct: 228 RLSHTDSLTGLDNRRAVDQKLRDYWSDWQRGGKSFAAILIDVDFFKRYNDFYGHQEGDRC 287

Query: 155 IAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NI 210
           +  +++ L          +GR GGEEF   A   + ++AA LA  +R  +E   +     
Sbjct: 288 LVLVANALKESIAPYDGSIGRYGGEEFIVLARLKTREQAADLAEAVRHSVETLALPHEQR 347

Query: 211 SSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             G SI  +++ AG         +  +I+ AD+ALY AK +GRN
Sbjct: 348 RDGMSIVTVSVGAGFTRNQIGSKLERLIHEADRALYGAKANGRN 391


>gi|288958523|ref|YP_003448864.1| GGDEF domain-containing protein [Azospirillum sp. B510]
 gi|288910831|dbj|BAI72320.1| GGDEF domain-containing protein [Azospirillum sp. B510]
          Length = 388

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 68/128 (53%), Gaps = 4/128 (3%)

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             +S++  D+D+FK +ND  GH VGD+V+   +D       +   +GR GGEEF     G
Sbjct: 250 RPVSMILADLDHFKSLNDLHGHWVGDEVLIGFADLARRSVRSIDLLGRWGGEEFIILLPG 309

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
           ++  EA   A  LR  +E+   ++  G     T+S G+AE    +   T I  AD ALY 
Sbjct: 310 TTVAEAVSTAERLRIQLES---HVFPGGQ-RATVSLGVAECRQGDSWETWIRNADTALYS 365

Query: 247 AKKSGRNR 254
           AK +GRNR
Sbjct: 366 AKATGRNR 373


>gi|242280344|ref|YP_002992473.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
 gi|242123238|gb|ACS80934.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
          Length = 482

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 87/167 (52%), Gaps = 10/167 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ Q +  D L+GL N  +F       +S +   +   SI+  D+D FK++ND  GH  G
Sbjct: 315 RLEQQADSDELTGLGNRRSFERFFESAVSGIKKKSGPFSIILLDVDGFKEVNDKCGHMEG 374

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS--QIN 209
           D+++  +S  +        F  R GG+EF     G  +  A  +A  +R  + ++  +  
Sbjct: 375 DRILKKISSIIRSCIRDSDFCARWGGDEFLLLVDGEVDL-AFDIAERIRTAVADACNEDL 433

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +SS     +T+S G+A+    + + ++I RAD+A+Y +K  G+++V+
Sbjct: 434 VSSDCGEIVTVSCGVAQYTDADTLDSLIVRADKAMYESKAQGKDKVI 480


>gi|157376441|ref|YP_001475041.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157318815|gb|ABV37913.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 514

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 8/163 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-----YNEKLS--IVFFDIDYFKQINDNFGHPVGDK 153
            +L+ +D L+ L N +A    +         +KL   +   DID+FK IND+FGH  GDK
Sbjct: 350 QKLNLLDSLTQLPNRAALEERMDQEFRNFQRQKLPLWVAVADIDHFKTINDSFGHSTGDK 409

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  ++  L        FV R GGEEF       + ++   L N +R+ +++        
Sbjct: 410 TLQVIAMALKNSLRDTEFVARYGGEEFVLIIPDVNAEDIDHLLNRVREKVKSIPFKF-KN 468

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I +T+S G A+    E I+    RAD ALY AK   R+RV+
Sbjct: 469 QRITVTVSIGAAQILENELINETFERADAALYRAKHESRDRVI 511


>gi|134093842|ref|YP_001098917.1| hypothetical protein HEAR0589 [Herminiimonas arsenicoxydans]
          Length = 361

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 87/188 (46%), Gaps = 23/188 (12%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKL 129
           +I LLL Y       E  +  NR   L+  D LS L N  A +++              L
Sbjct: 184 SIGLLLLYF------ERTVEENR--HLATHDELSKLFNRRAIVAAGERELYLSIRLQRDL 235

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +I F DID FK+ ND FGH  GD VIA ++  L     +   VGR GGEEF     G   
Sbjct: 236 AIAFIDIDLFKRFNDEFGHAAGDTVIAEVAAVLQQTCRSIDMVGRYGGEEFLVILPGVDS 295

Query: 190 QEAAILANDLRKIIENSQINISSGPSIH-ITISAGIA--ERCHKEPISTIIYRADQALYV 246
           Q A  +   L + +   +        IH +TIS G+A   R  +   + ++ RAD ALY 
Sbjct: 296 QSAVQIGQRLVEAMREYRF-----LGIHPVTISIGMAILPRNAECSWAQLLRRADAALYE 350

Query: 247 AKKSGRNR 254
           AK  GR+R
Sbjct: 351 AKNMGRDR 358


>gi|167035811|ref|YP_001671042.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida GB-1]
 gi|166862299|gb|ABZ00707.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida GB-1]
          Length = 568

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 86/161 (53%), Gaps = 15/161 (9%)

Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N           I    S +  +++   D+D FKQIND +GH +GD+++  ++
Sbjct: 131 DELTGLPNRFLLSKALDQAIVKAKSQSSTVAVGVLDLDGFKQINDRYGHEIGDRLLVAVA 190

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHI 218
           D+L         V RLGG+EF    L S  ++  +L + L++++   S + +  G  I+I
Sbjct: 191 DRLKHSMRIEDTVARLGGDEF---VLISGVRDPKVLESALQRLLAALSAVYVIDGIGINI 247

Query: 219 TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           + S G+    +  E   T++  ADQA+Y AK+SGRN   CF
Sbjct: 248 SASIGVTLYPNDNENADTLLRHADQAMYKAKQSGRN---CF 285


>gi|154253246|ref|YP_001414070.1| diguanylate cyclase [Parvibaculum lavamentivorans DS-1]
 gi|154157196|gb|ABS64413.1| diguanylate cyclase [Parvibaculum lavamentivorans DS-1]
          Length = 236

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 87/183 (47%), Gaps = 10/183 (5%)

Query: 78  ISLLLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEK 128
           +S  L Y   S  +  EL     ++  L+  D L+GLLN   F         S   Y E 
Sbjct: 45  LSRALAYADESETRIVELTARIRQLEALAHTDELTGLLNRRGFDDVLRRNLLSAARYEEA 104

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
               + D++ FK IND +GH  GD+V+  +   L        +  RLGG+EFA   + + 
Sbjct: 105 GLFAYIDLNDFKSINDRYGHTAGDEVLRAVGSFLSRSIRATDYAARLGGDEFAILFVRAD 164

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
            + A   A ++ + I + +I+  S   I +T S G+A    +   + +I RAD+A+Y  K
Sbjct: 165 HKRARERAREMLRGIADLEISCKS-HRISVTASLGLASYNGETCQADLIERADRAMYADK 223

Query: 249 KSG 251
           KSG
Sbjct: 224 KSG 226


>gi|94498629|ref|ZP_01305182.1| hypothetical protein SKA58_11253 [Sphingomonas sp. SKA58]
 gi|94421924|gb|EAT06972.1| hypothetical protein SKA58_11253 [Sphingomonas sp. SKA58]
          Length = 653

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 93/199 (46%), Gaps = 30/199 (15%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           I +  L+G    S+L E F       +L+R D L+GL N  A    L          N+ 
Sbjct: 192 IVVQALIGKRDKSLLAEKF------ERLARFDSLTGLENRMAMQMRLRDIFQTNEKRNDA 245

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           ++I++ D+D FK+IND+ GH VGD+++  ++++L  V      + R GG+EF      + 
Sbjct: 246 VAILWMDLDRFKEINDSLGHMVGDQLLRAVAERLTEVVQGRGKIARFGGDEFVLICSDTD 305

Query: 189 EQEAAILANDLR-------KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRA 240
              AA +A ++        +I EN          + +T S G A        +  ++  A
Sbjct: 306 RVTAAGIAQEIVSYFAHGFEIGEN---------HLQVTASVGYAVGPQDGRDMDELMQHA 356

Query: 241 DQALYVAKKSGRNRVVCFS 259
           D ALY AK  GRNR   F+
Sbjct: 357 DLALYEAKGQGRNRSASFN 375


>gi|66045221|ref|YP_235062.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63255928|gb|AAY37024.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 730

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 103/210 (49%), Gaps = 21/210 (10%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--- 115
           +G   +L  ++  + ++ T  LL+       LK    +  +I  L+  D L+GL N    
Sbjct: 245 HGAPLVLDISVEFITLNNTACLLMNARDIGALKN---AQAQIQHLAYHDPLTGLPNRALL 301

Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
               S  +S L   N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         
Sbjct: 302 LDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 361

Query: 172 VGRLGGEEFAA--AALGSSEQEAAI----LANDLRKIIENSQINISSGPSIHITISAGIA 225
           V RLGG+EF      L  S+ E       LA++LR ++  ++     G  + +T S G+ 
Sbjct: 362 VARLGGDEFVVLICGLEGSQDEVTRQVRELADNLRNLL--AEPMFLDGHRLQVTPSIGVV 419

Query: 226 --ERCHKEPISTIIYRADQALYVAKKSGRN 253
                   P + ++ RAD ALY AK  GRN
Sbjct: 420 LIPDDGLTP-ADLLKRADIALYRAKDCGRN 448


>gi|29142052|ref|NP_805394.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213424416|ref|ZP_03357229.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|29137681|gb|AAO69243.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 660

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF    A  +  + E  A+ + 
Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRIL 335

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 390

Query: 257 CFS 259
            FS
Sbjct: 391 VFS 393


>gi|332530042|ref|ZP_08405992.1| hypothetical protein HGR_08964 [Hylemonella gracilis ATCC 19624]
 gi|332040515|gb|EGI76891.1| hypothetical protein HGR_08964 [Hylemonella gracilis ATCC 19624]
          Length = 577

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 99/191 (51%), Gaps = 16/191 (8%)

Query: 81  LLGYISGSILKELFISY----NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKL 129
           +LG IS  +L++  ++     + I +++  D L+GL N           ++S      ++
Sbjct: 381 MLGAIS--VLRDNSVARKAAEDAIREMAYYDRLTGLPNRRLLEDRMQQVLASAQRRQTRV 438

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-S 188
           +++F D+D FKQ+ND  GH  GD +++ ++ ++  V        R+GG+EF      + S
Sbjct: 439 AVMFIDLDKFKQVNDRHGHEAGDWLLSEVAKRMRGVLRESDTAARVGGDEFVVLLPDTNS 498

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247
            QEA ++A  +R+ +E   +N   G  + I+ S G+A    + +    +++  D+A+Y  
Sbjct: 499 PQEATLVAEKIRQQLEQPFVN-REGRVLEISSSIGVAMYPDQADNPRDLLHCGDEAMYWV 557

Query: 248 KKSGRNRVVCF 258
           KK GRN V  F
Sbjct: 558 KKHGRNAVAVF 568


>gi|262275036|ref|ZP_06052847.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Grimontia hollisae CIP 101886]
 gi|262221599|gb|EEY72913.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Grimontia hollisae CIP 101886]
          Length = 463

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 86/174 (49%), Gaps = 22/174 (12%)

Query: 99  RISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           ++   +  D L+GL+N         S  +S++     KL ++  D+D+FKQIND +GH  
Sbjct: 280 KLEDYAYTDSLTGLMNRRGLDRMYSSKRVSNMRKRG-KLGVLMLDVDHFKQINDKYGHLK 338

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENS 206
           GD+V+  L   L       + V RLGGEEF     A  +   E  A  + + L      +
Sbjct: 339 GDEVLNNLGGVLTDYVREAVAVARLGGEEFCLLLPAEDVRDLEVNADYVCSCLVPQASQT 398

Query: 207 QINISSGPSIHITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           Q++      +H+T S G   +     +  +  +++ AD+ +Y AK++GRNRVV 
Sbjct: 399 QLD------LHVTASIGALLVDRESPETSLEALLHHADRLMYQAKEAGRNRVVV 446


>gi|255321703|ref|ZP_05362858.1| fog: ggdef domain protein [Campylobacter showae RM3277]
 gi|255301183|gb|EET80445.1| fog: ggdef domain protein [Campylobacter showae RM3277]
          Length = 421

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 91/178 (51%), Gaps = 21/178 (11%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHS---AFISSLGSYNEKLSIVFFDIDYFKQ 141
           I+  + KE     N I  L+  D L+GL N +   AF+  L + +  +SI++ D+D FKQ
Sbjct: 241 IARDVTKEYEYLQN-IEHLAHYDQLTGLANRNQLDAFLDKLKTTH--MSILYMDLDRFKQ 297

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF-----AAAALGSSEQEAAILA 196
           +ND  GH  GDK +  +S+ +  +F   M V R+GG+EF       A + S      IL 
Sbjct: 298 VNDEHGHQAGDKALVAISELIKEIFNDAMNV-RIGGDEFISIFTDGANMQSIAPRVQILI 356

Query: 197 NDLRKII-ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGR 252
           +   KI  EN   N        +++SAGIAE +        ++ RAD ALY AK +GR
Sbjct: 357 DRFFKICQENPLFN-------GLSVSAGIAEGQIGHGSFDLLLQRADDALYRAKHAGR 407


>gi|229199474|ref|ZP_04326136.1| Sensory box protein [Bacillus cereus m1293]
 gi|228584002|gb|EEK42158.1| Sensory box protein [Bacillus cereus m1293]
          Length = 735

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144
           L+    ++  L+  D L+GL N   F   L         S N+ ++++F D+D FK+IND
Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVIFLDLDRFKKIND 354

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
             GH VGD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  I+
Sbjct: 355 RLGHDVGDLLLIEVAKRLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 414

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            N    I     + IT S GIA    C  + ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 415 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTALMKNADMAMYRAKANGKNRFVFFS 469


>gi|213586095|ref|ZP_03367921.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 565

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 121 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 180

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF    A  +  + E  A+ + 
Sbjct: 181 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRIL 240

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 241 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 295

Query: 257 CFS 259
            FS
Sbjct: 296 VFS 298


>gi|126669067|ref|ZP_01740000.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter sp. ELB17]
 gi|126626469|gb|EAZ97133.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter sp. ELB17]
          Length = 590

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 17/178 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-----GSYNEKL--SIVFFDIDYFKQINDNFGHPVG 151
           RI QL+  D L+G+ N       L      ++  +L  ++++ D+D+FKQIND  GH VG
Sbjct: 400 RIHQLAYYDALTGIPNRRLMDDRLEHAIRQTHRNRLGLAVLYIDLDHFKQINDTLGHHVG 459

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQIN 209
           D ++   +++          + R GG+EF      L   E    I    L K  E+ QI+
Sbjct: 460 DSLLLQFTERAQTCLREGDTLARFGGDEFVVILPELNGPEAAKTIAQRLLDKHREDYQID 519

Query: 210 ---ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
              +S+G S+ I++ +   +   +     ++ +AD A+Y AK++G N +  F+D E+ 
Sbjct: 520 GHTLSAGASVGISLYSNEVDTARQ-----LLEQADAAMYTAKRAGGNAICLFTDAESQ 572


>gi|126462427|ref|YP_001043541.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhodobacter sphaeroides ATCC 17029]
 gi|126104091|gb|ABN76769.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 833

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 12/171 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  ++R D L+GL N   F       ++SL +    ++++  D+D FK +ND  GHPVG
Sbjct: 393 QVFHMARHDMLTGLPNRHYFGDCYQEAVASL-TPERSVAVLMLDLDGFKTVNDTRGHPVG 451

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINI 210
           D+V+  ++++L     +   V RLGG+EFA       SEQEA  LA   R I   S+   
Sbjct: 452 DQVLCEVANRLRTSVRSTDTVARLGGDEFAVIQTPIRSEQEACDLAR--RLIAAISKPFD 509

Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             G    +  S GIA  R   +    I+  AD ALY AK++GR     F +
Sbjct: 510 LEGAVPEVGASVGIAFARGRGDSAEEIMRYADVALYAAKQAGRGTFRVFDE 560


>gi|228988575|ref|ZP_04148662.1| Sensory box protein [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228771192|gb|EEM19671.1| Sensory box protein [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 735

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 13/177 (7%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQIND 144
           L+    ++  L+  D L+GL N   F   L         S N+ ++++F D+D FK+IND
Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKKILNTAQTSAND-VAVMFLDLDRFKKIND 354

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
             GH VGD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  I+
Sbjct: 355 RLGHDVGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 414

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            N    I  G  + IT S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 415 -NKPFFI-QGEELSITPSIGIAMYPDYGTDVTELMKNADMAMYRAKANGKNRFVFFS 469


>gi|213647977|ref|ZP_03378030.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 663

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF    A  +  + E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFS 259
            FS
Sbjct: 394 VFS 396


>gi|206901792|ref|YP_002251455.1| response regulator [Dictyoglomus thermophilum H-6-12]
 gi|206740895|gb|ACI19953.1| response regulator [Dictyoglomus thermophilum H-6-12]
          Length = 718

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 16/189 (8%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGS 124
           VI  I  S +   I G+ L      +  ++QL+  D L+ L N           I     
Sbjct: 528 VIYEILRSQISAAIQGAKL------FEELNQLAITDPLTKLPNRRYIEAEFQKEIERSKR 581

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           Y+  LS++  D+D FK IND FGH  GD V+  +++ L         VGR GG+EF    
Sbjct: 582 YSSPLSVMVLDLDNFKIINDTFGHQYGDGVLKKIAENLRKYCRKVDIVGRFGGDEFVIIL 641

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQ 242
             ++ +++  +A+ + K +E   I + +G  ++I++S GIA      K+P   ++  AD 
Sbjct: 642 PETNLEKSIKVADKIIKNLEKMNITLPNGEKVYISVSIGIASYPETTKDP-EKLLSLADI 700

Query: 243 ALYVAKKSG 251
           A+Y AKK G
Sbjct: 701 AMYNAKKLG 709


>gi|51241737|dbj|BAD36773.1| di-guanylate cyclase [Gluconacetobacter xylinus]
          Length = 580

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 16/192 (8%)

Query: 82  LGYISGSI-----LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------ 130
           LG + G +     + EL  + +R+  L+  D L+GL N   F + L +  E  S      
Sbjct: 115 LGAVEGYVATRFEITELMNTRDRLKSLAATDPLTGLFNRGGFNNMLQAAVEDKSQNITRD 174

Query: 131 --IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
             +V FD+D FKQIND  GH  GD V+  +S++L+ +      V RLGG+EFA     + 
Sbjct: 175 IMLVMFDLDGFKQINDIHGHHAGDVVLKVISNRLLALVHPEDAVCRLGGDEFALILNHTL 234

Query: 189 EQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVA 247
            +    L   L K++   +  I  G + ++++ S G++    +E   ++   AD ALY A
Sbjct: 235 HKYPLSLM--LEKLLAELEAPIEVGNTMVNVSGSIGVSPIASQESAESLQKNADIALYAA 292

Query: 248 KKSGRNRVVCFS 259
           K++G ++   F 
Sbjct: 293 KRAGGHQARMFD 304


>gi|188583652|ref|YP_001927097.1| diguanylate cyclase [Methylobacterium populi BJ001]
 gi|179347150|gb|ACB82562.1| diguanylate cyclase [Methylobacterium populi BJ001]
          Length = 372

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 88/169 (52%), Gaps = 13/169 (7%)

Query: 107 DCLSGLLNHSAFISSL----------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           D L+GL N  +F  +L          G   +  S++  DID FK+ ND +GH  GD+V+ 
Sbjct: 198 DALTGLGNRKSFEEALRRTVDASPTSGHGGKPTSLIVLDIDSFKRFNDLYGHLTGDQVLR 257

Query: 157 FLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INISSGP 214
            ++  +    G T   + R GGEEF      +  ++A  +A  +R  +   + +  S+G 
Sbjct: 258 LVAIVMREHVGQTGATLARFGGEEFGIVLPETGLEDARAIAERVRNGVTGRELVKRSTGE 317

Query: 215 SI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           S+  +T+S G+A +   +   +++ RAD  L+ AK++GRNR    ++++
Sbjct: 318 SLGKVTVSLGVATQRGDDNAVSLLERADACLFAAKRAGRNRTYDETEVD 366


>gi|146297063|ref|YP_001180834.1| diguanylate cyclase [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410639|gb|ABP67643.1| diguanylate cyclase with GAF sensor [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 557

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 8/170 (4%)

Query: 97  YNRISQLSRIDCLSGLLN----HSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPV 150
           Y ++  ++ +D L+G  N    +      + + N++  +SI  FD+D FK++ND +GH  
Sbjct: 382 YQQMRSMAMVDGLTGAYNRIYLYEVLEKEIETSNKRYPISIALFDVDNFKKLNDTYGHLF 441

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDKV+  +             V R GGEEF          EA  +   +R+ IEN  I  
Sbjct: 442 GDKVLQTIVRIAKEKIRKGDIVARYGGEEFVIVFNHLESSEAYKVVERIRRAIENETIE- 500

Query: 211 SSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +     IT+S GI+    H + +  +I  AD A+Y AK SG+N  V ++
Sbjct: 501 DNLIQTRITVSFGISSYPAHADNVKDLIKCADIAMYRAKSSGKNCTVIYN 550


>gi|117920751|ref|YP_869943.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. ANA-3]
 gi|117613083|gb|ABK48537.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. ANA-3]
          Length = 752

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 9/162 (5%)

Query: 107 DCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N +A         S  S     S +  D+D FKQ+ND +GH  GD ++  + +
Sbjct: 318 DPLTGLANRNALFRQIQELISADSLTPGFSFMLMDLDNFKQVNDTYGHDKGDALLVQVVE 377

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           Q+           RLGG+EFA    G  +++E + LA+ + K +   +  +S    ++ +
Sbjct: 378 QIKTCLNEQAVFARLGGDEFALLLPGLVTQRELSQLADKINKRV-YQRYELSHDKGVYSS 436

Query: 220 ISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +S GIA        +  ++  ADQA+Y++K  GRNR   F++
Sbjct: 437 VSIGIARFPEDALDLEQLLNCADQAMYISKADGRNRYHFFTE 478


>gi|298486840|ref|ZP_07004896.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298158707|gb|EFH99771.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 525

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 10/172 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL ++   +  ++R D L+ L N   F ++           N  ++++  DID+FKQ ND
Sbjct: 328 ELSVARADLEIIARTDSLTHLANRRCFDATFQLEWERASRDNSSIALILLDIDWFKQYND 387

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  ++ ++  +      P     R GGEEF     G+    A  +A ++R  I
Sbjct: 388 CYGHLRGDDCLSQVAGLIGSGIKRPGDLAARYGGEEFVILLPGTDLTGALSVAEEVRLSI 447

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
           EN+ I  S+ P  ++TIS+G+        E  +  +  AD+ LY AK  GRN
Sbjct: 448 ENALIEHSASPLGNVTISSGVVAINALETEGYTAALREADRLLYCAKTRGRN 499


>gi|238917332|ref|YP_002930849.1| two-component system, PleD related family, response regulator
           [Eubacterium eligens ATCC 27750]
 gi|238872692|gb|ACR72402.1| two-component system, PleD related family, response regulator
           [Eubacterium eligens ATCC 27750]
          Length = 385

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 96/200 (48%), Gaps = 13/200 (6%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYN--RISQLSRIDCLSGLLNH---SAFISSLGS 124
            + II     LL+ Y     ++ + ++    R    S  D L+GL N     A I ++  
Sbjct: 167 DVCIIQAATILLVAYQHNLAVQRVRVNMQLKRKKDYSEHDALTGLYNRRGLDARIKAIWP 226

Query: 125 YNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEE 179
           + E+    ++++  D+DYFK+ ND FGHP GD+ +  ++  L      +   V R GGEE
Sbjct: 227 FCERNRLSVAMIAVDVDYFKKYNDTFGHPKGDECLKTVAGILKNSAQRSTDVVTRTGGEE 286

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAE--RCHKEPISTI 236
           F        E+    LA  +R  ++   I  +  G S ++T+S GIA     +      +
Sbjct: 287 FIVFVQDMDEESLISLAMKIRNNLDQKHIEHAYYGVSKYVTVSMGIAGFVPAYNNDFKKL 346

Query: 237 IYRADQALYVAKKSGRNRVV 256
              AD ALY+AKK+GRN +V
Sbjct: 347 YQEADNALYLAKKNGRNCIV 366


>gi|237731656|ref|ZP_04562137.1| sensory box-containing diguanylate cyclase [Citrobacter sp. 30_2]
 gi|226907195|gb|EEH93113.1| sensory box-containing diguanylate cyclase [Citrobacter sp. 30_2]
          Length = 410

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 74/158 (46%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN   F        +   S  +  S++  D D FK IND FGH  GD+V+  L+
Sbjct: 256 DALTGLLNRRHFYQVTEPEQTHAMSLTQDYSLLLIDTDRFKSINDLFGHLKGDEVLCALA 315

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         + R GGEEF      +S   A  LA  +R  +  +++ +   P    T
Sbjct: 316 RTLESCARKDDLIFRWGGEEFVLLLPRTSLDIALNLAEVIRATV--AKVTLPGLPR--FT 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 372 VSIGVARHETNESIDELFKRVDDALYKAKNEGRNRVLA 409


>gi|289807206|ref|ZP_06537835.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 544

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 100 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 159

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF    A  +  + E  A+ + 
Sbjct: 160 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRIL 219

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 220 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 274

Query: 257 CFS 259
            FS
Sbjct: 275 VFS 277


>gi|307153836|ref|YP_003889220.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
 gi|306984064|gb|ADN15945.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
          Length = 472

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 13/166 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+R+D L+G+ N   F  +L           E LS++  D+DYFK+ ND +GH  GD
Sbjct: 293 LQRLARVDGLTGVANRLCFDETLAKEWQRCRREQEPLSLILCDVDYFKKYNDTYGHLKGD 352

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQI-N 209
           + +  ++  +      P   V R GGEEF    LG++  E AI +A  +++ ++  +I +
Sbjct: 353 ECLIEIAKAISRAVKRPTDLVARYGGEEF-VIILGNTATEGAITVAKVIQEKVQQLKIPH 411

Query: 210 ISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRN 253
            ++    +IT+S G+A       +S   +I  AD+ALY AK+ GR+
Sbjct: 412 QTAKDKNYITLSIGVASVIPYPKLSPKILIASADRALYEAKEQGRD 457


>gi|148261381|ref|YP_001235508.1| diguanylate cyclase [Acidiphilium cryptum JF-5]
 gi|326404870|ref|YP_004284952.1| hypothetical protein ACMV_27230 [Acidiphilium multivorum AIU301]
 gi|146403062|gb|ABQ31589.1| diguanylate cyclase [Acidiphilium cryptum JF-5]
 gi|325051732|dbj|BAJ82070.1| hypothetical protein ACMV_27230 [Acidiphilium multivorum AIU301]
          Length = 359

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 10/165 (6%)

Query: 107 DCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+ + N  AF          + G+      +V FDID FK  ND  GH  GD ++  +
Sbjct: 193 DSLTAITNRRAFDTKARRFITQTRGAAPLVACLVLFDIDNFKWFNDVHGHQTGDLILRLV 252

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQINISSGPSI- 216
           +  L         V R GGEEFA    G+  + A  +A  + + + +   +  SSG  + 
Sbjct: 253 ARLLSDSVKGRDTVARYGGEEFAVLLAGADLRSAISVARQICQSMADRKLVKRSSGQQLT 312

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            +T+SAG+A+    E +++ + RAD ALY AK+ GRNRV    D+
Sbjct: 313 QVTLSAGVAQFIGGENLASWVSRADAALYRAKELGRNRVCSELDL 357


>gi|307822126|ref|ZP_07652358.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
 gi|307736692|gb|EFO07537.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
          Length = 670

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 9/176 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNH---SAFISSLGSYNE----KLSIVFFDIDYFKQINDNFGH 148
            Y++  + ++ID L+ L N    + F++ +   +E     ++I F DID FK  ND  GH
Sbjct: 491 QYDQQKKHAQIDHLTQLFNKRMLTNFLTEIFQGDESKLTNIAIGFVDIDKFKLFNDTCGH 550

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD  +  ++D L  +     F+GR GGEEF      +  + A   A  +R  IE    
Sbjct: 551 QAGDDALKIVADILRSLTRPGDFIGRYGGEEFLFVLRNTDAKGAYGYAERIRSEIERRGK 610

Query: 209 NISSGPSIH-ITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            ++     H +T+S G++         + +I  ADQA+Y AK+ GRNR+V   D+E
Sbjct: 611 LMNQRFHGHLLTVSIGVSLYSADYTNYTDMIEAADQAMYQAKEEGRNRIVMLPDVE 666


>gi|262404616|ref|ZP_06081171.1| GGDEF family protein [Vibrio sp. RC586]
 gi|262349648|gb|EEY98786.1| GGDEF family protein [Vibrio sp. RC586]
          Length = 505

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 96/192 (50%), Gaps = 26/192 (13%)

Query: 88  SILKELFISYNRI-SQL----------SRIDCLSGLLNHSAFISSLGSY-NEK----LSI 131
           S +KE  ++ NRI SQL          S  D L+ + N       L S+ N++    L +
Sbjct: 312 SEMKEFAVTINRIVSQLDESQQVLRWQSEHDPLTRISNRRHLEKQLKSFMNDRQYPHLVL 371

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSD--QLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
              DIDYFK+ ND+FGH  GD+ +  +++  Q +  FG  + V R GGEEF       S 
Sbjct: 372 YLIDIDYFKRFNDSFGHLAGDEALCSVANILQSLEFFGDKI-VARFGGEEFCVVLASESP 430

Query: 190 QEAAILANDLRKIIENSQINI-----SSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
            +A   A  +   +  +Q+ I     S+  S+ I+I A  A     E   ++ ++AD AL
Sbjct: 431 FDADRFAQQMHDKV--AQLAIANPVNSTFQSLTISIGAVYASSPQMESYLSLFHQADMAL 488

Query: 245 YVAKKSGRNRVV 256
           Y AK+SGRNR V
Sbjct: 489 YHAKESGRNRYV 500


>gi|228983830|ref|ZP_04144025.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228775879|gb|EEM24250.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 568

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 88/172 (51%), Gaps = 7/172 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQAP- 251

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN   CF
Sbjct: 252 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRN-AACF 301


>gi|77460022|ref|YP_349529.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1]
 gi|77384025|gb|ABA75538.1| putative GGDEF domain protein [Pseudomonas fluorescens Pf0-1]
          Length = 553

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 86/186 (46%), Gaps = 20/186 (10%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           I K L  +   + Q++  D L+GL N   F  SL          +  +S++  DID+FK+
Sbjct: 360 IEKNLRKAQQALEQIATHDSLTGLANRRLFERSLEVEFARGARQSSPVSLIMLDIDFFKR 419

Query: 142 INDNFGHPVGDKVIAFLSDQLV--VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
            ND +GH  GD  +  ++ Q+V            R GGEEFA     +    A  +A  +
Sbjct: 420 YNDAYGHVAGDHCLTQVA-QVVKNCCQRKSDLAVRYGGEEFAVLLPDTDINGALAIAGQI 478

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCH------KEPISTIIYRADQALYVAKKSGRN 253
           R+ + +  I  S  P+ ++T+S G    C+       +     I RAD ALY AK +GRN
Sbjct: 479 RRSVMDKHITHSGSPTGYLTVSLG----CYAFIPTGNDSPELFIQRADAALYQAKNAGRN 534

Query: 254 RVVCFS 259
           R    S
Sbjct: 535 RAAVLS 540


>gi|50085216|ref|YP_046726.1| two-component response regulator [Acinetobacter sp. ADP1]
 gi|49531192|emb|CAG68904.1| conserved hypothetical protein [Acinetobacter sp. ADP1]
          Length = 410

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 86/174 (49%), Gaps = 11/174 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           EL      +  LS+ D L+GL N       L         ++  ++I+  DIDYFK  ND
Sbjct: 222 ELVKQAELLETLSQQDSLTGLANRRYLDEVLEKEWRRAVRHSTPITIMMIDIDYFKSYND 281

Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           + GH  GD+ +  ++  L  +   +     R GGEEF      ++E +A I    L  ++
Sbjct: 282 SLGHIKGDECLREIALALSTLTSRSGDLAARYGGEEFLLLFPMTNESDALIQVKRLMNVV 341

Query: 204 ENSQI-NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNR 254
           +N  I + SS  S  +T+S G+A       + IS  I RAD ALY+AK +GRN+
Sbjct: 342 KNVGILHPSSDISSEVTLSVGVATIIPTLADTISAFITRADHALYMAKSNGRNQ 395


>gi|114763070|ref|ZP_01442500.1| diguanylate cyclase, putative [Pelagibaca bermudensis HTCC2601]
 gi|114544394|gb|EAU47402.1| diguanylate cyclase, putative [Roseovarius sp. HTCC2601]
          Length = 318

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 84/156 (53%), Gaps = 10/156 (6%)

Query: 107 DCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL N  A    +  L    E+ +++  D+D+FKQ+ND+ GH  GD+V+  ++  ++
Sbjct: 156 DPLTGLGNRRAMDQLLQRLIRGGERFAVLHLDLDHFKQVNDSRGHAAGDRVLQAVARTML 215

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISA 222
            +      V R+GG+EF    LG ++ E  + LA  L   IE   + I  G +  ++ S 
Sbjct: 216 DLTRKNDLVARIGGDEFVILPLGLTDHERLSDLARQLIARIEEP-VPIEDG-ACQVSASI 273

Query: 223 GIAERCHKEP----ISTIIYRADQALYVAKKSGRNR 254
           GI+      P    ++ ++ +AD ALY AK+ GR+R
Sbjct: 274 GISLHDPDNPSPAGVAGLLAQADSALYAAKREGRSR 309


>gi|110835028|ref|YP_693887.1| GGDEF domain-containing protein [Alcanivorax borkumensis SK2]
 gi|110648139|emb|CAL17615.1| GGDEF domain protein [Alcanivorax borkumensis SK2]
          Length = 402

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 11/167 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ +LSR D L+GL N   F  +            + L+++  D+D FK  ND +GH  
Sbjct: 222 ERLHRLSREDSLTGLANRRFFDEAFDREWRRCKRSQQPLTVMLVDVDRFKAYNDGYGHLQ 281

Query: 151 GDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD  +  L+ +L          V R GGEEFA     + E EA  LA+ L + + +  I 
Sbjct: 282 GDSCLQKLAAELHRYSRRAGDLVARFGGEEFALLYPETDELEAQQLASRLCRSVRSLAIP 341

Query: 210 ISSGPSIH-ITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRN 253
            +  P ++ +T+S G+A      +     ++  ADQALY+ K+ GR+
Sbjct: 342 HADSPEMNEVTVSVGVATMIPNQRHSAGDLLEAADQALYLVKQGGRD 388


>gi|94499244|ref|ZP_01305782.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Oceanobacter sp. RED65]
 gi|94428876|gb|EAT13848.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Oceanobacter sp. RED65]
          Length = 596

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 15/224 (6%)

Query: 39  IATVIFIANIFLFYIGL---TPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +A VI+   +FL  +     T  +G++ +L    +    S+  S LL       +K+L  
Sbjct: 360 VAWVIYAITLFLSALAALSNTIEWGMKPLLAAQFA----SLLESFLLALALIEKVKQLNS 415

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQINDNFGHP 149
             + ++Q S  D L+ L+N     + +        ++E LS++  D D+FKQIND +GH 
Sbjct: 416 EISIVTQDSMRDELTQLVNRRFLNNKITQIFKHLRHDESLSLILIDADFFKQINDQYGHT 475

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGDKV+  L+D +  +      V R GGEEF        ++    +A  LR  ++     
Sbjct: 476 VGDKVLIHLADTIREMTRPQDVVARYGGEEFVMILRTFDQESVKTIAERLRHHVKTKPYK 535

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
                 I +++S G+     ++    I Y AD ALY AK  GR+
Sbjct: 536 -DEQYEITLSVSLGVCPIEGRDLTQAIQY-ADIALYHAKSIGRD 577


>gi|16125110|ref|NP_419674.1| GGDEF family protein [Caulobacter crescentus CB15]
 gi|221233837|ref|YP_002516273.1| CHASE4-family GGDEF/EAL protein [Caulobacter crescentus NA1000]
 gi|13422114|gb|AAK22842.1| GGDEF family protein [Caulobacter crescentus CB15]
 gi|220963009|gb|ACL94365.1| CHASE4-family GGDEF/EAL protein [Caulobacter crescentus NA1000]
          Length = 735

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 103/225 (45%), Gaps = 17/225 (7%)

Query: 56  TPFYGLEYILVENLSLVIISI----TISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           TP +  + +L + +  +++ +     ++LL    S  I + L  S  R   ++  D L+G
Sbjct: 254 TPPHPGQRLLRKAVVPILLVVGGLAVVALLFARRSRRIAEGLVASEARAKHMAMHDALTG 313

Query: 112 LLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           L N   F       +  L      ++++  D+D FK +ND  GH  GD++I  +  +L  
Sbjct: 314 LPNRVLFEERLRQGVDGLSRRRGAMAVLAIDLDRFKAVNDTHGHAAGDELIQVIGARLAG 373

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           +      + RLGG+EF   A     Q AA LA  L   +  + +++S G ++ +  S G+
Sbjct: 374 LCRASETLARLGGDEFGVVAAEIDPQGAAALAERLVAAL-AAPVDLSCG-TVFVGGSVGV 431

Query: 225 AERCHKEPISTII---YRADQALYVAKKSGRNRVVCFSDIENNTC 266
           A     E     +    RAD A+Y AK  GR R  CF + E +  
Sbjct: 432 AVITPDEAFVGAVEAARRADVAMYRAKDEGRGR-YCFFEAEMDAA 475


>gi|326317226|ref|YP_004234898.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374062|gb|ADX46331.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 1260

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 17/176 (9%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL---------GSYNEKLSIVFFDIDYFKQINDN 145
           +  + + QL+  D L+GL N       L         G +  +L + + D+D FK +ND 
Sbjct: 814 VQEDMLQQLAHFDALTGLPNRVQLARRLEQAMAQARAGGW--QLGVAYLDLDGFKPVNDR 871

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD+++  ++ +L         V RLGG+EF    L    Q  A     LR+++EN
Sbjct: 872 LGHSAGDRLLVIVAGRLTRALRPVDCVARLGGDEF--VLLMPELQSRADAEQLLRRLMEN 929

Query: 206 SQINISSGPSIHITISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRNRVVCF 258
                + G    +T++A +    + E  S   T++  AD A+Y AK+ GRNRV  F
Sbjct: 930 LAAPYTLGTE-RVTVTASVGYTLYPEDASDADTLLRHADHAMYGAKQGGRNRVQPF 984


>gi|260777776|ref|ZP_05886669.1| ammonium transporter [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605789|gb|EEX32074.1| ammonium transporter [Vibrio coralliilyticus ATCC BAA-450]
          Length = 635

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 97/198 (48%), Gaps = 20/198 (10%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLS 130
           +S+   Y+  S  +        + +++ +D L+G+ N   +  ++ +        N+  +
Sbjct: 439 LSMTYNYLLDSTNRHFREKERELLKMASLDPLTGVPNRRVYEQAIENTVKKSHEENKDFA 498

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSE 189
           ++  D+DYFKQ ND++GH +GD  +  +   L  V       + R+GGEEFA     ++ 
Sbjct: 499 LLILDLDYFKQYNDHYGHQLGDYCLQNVCQALSSVTRRQHDILARIGGEEFAFILRDTNL 558

Query: 190 QEAAILANDLRKIIENSQINISSGPSIH-------ITISAGIAERCHKEPISTIIYRADQ 242
            +A  +A  LRK +E  +I     P +H       ++I   + +     P + +   AD 
Sbjct: 559 HDARRIAELLRKEVEMLEI-----PHVHSECDFVTVSIGGAVWDMRINLPHTVLFDEADA 613

Query: 243 ALYVAKKSGRNRVVCFSD 260
           AL+ AK+ GRN+VV FSD
Sbjct: 614 ALFKAKELGRNQVVFFSD 631


>gi|254498378|ref|ZP_05111110.1| hypothetical protein LDG_2734 [Legionella drancourtii LLAP12]
 gi|254352400|gb|EET11203.1| hypothetical protein LDG_2734 [Legionella drancourtii LLAP12]
          Length = 412

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 8/167 (4%)

Query: 100 ISQLSRIDCLSGLLNH---SAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S+L+  D L+ L N    + F+S     +      L +   DID FK+ ND + H  GD
Sbjct: 241 LSELTLHDPLTNLYNRRHLNEFLSRELIRIAREKNTLCVAMLDIDNFKKFNDTYSHLAGD 300

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  +   L+  F       R GGEEFA      +   A    +  R+ ++N+      
Sbjct: 301 EVLKLIGQLLLSDFRESDIPFRFGGEEFAVIFPNMTLDNAFDRMDQFREQLKNTIAYYKD 360

Query: 213 GPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            P   ITIS GIAE   H   I  II  AD ALY AK++G++RV  +
Sbjct: 361 RPLPGITISIGIAEAPKHGATIEDIIKAADHALYAAKEAGKDRVKSY 407


>gi|213052592|ref|ZP_03345470.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
          Length = 543

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 99  AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 158

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF    A  +  + E  A+ + 
Sbjct: 159 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRIL 218

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 219 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 273

Query: 257 CFS 259
            FS
Sbjct: 274 VFS 276


>gi|168178633|ref|ZP_02613297.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum NCTC 2916]
 gi|182670303|gb|EDT82277.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum NCTC 2916]
          Length = 419

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 15/180 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           E  I  ++  Q++  D L+ L N ++F+  L             L+I+F D+D FK++ND
Sbjct: 244 ERKIYNDKTKQMAYFDSLTELPNRNSFLKQLEHEIKLSKKKQSLLAIMFLDLDKFKEVND 303

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
           NFGH  GDK++  ++ ++     +   + R GG+EF       + E++   LA D+ ++ 
Sbjct: 304 NFGHCTGDKLLWQVAKRVKNTISSKDLIARFGGDEFTILIRNIAHEKQVEDLAMDIIEVF 363

Query: 204 ENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +   I I  G  ++I  S GI+   +  H      +I +AD+A+Y AKK G N+   + D
Sbjct: 364 KEP-ICI-EGIYVNIKTSIGISFFPKDGH--TSQELIKKADKAMYDAKKRGSNKFQIYKD 419


>gi|94987046|ref|YP_594979.1| PleD [Lawsonia intracellularis PHE/MN1-00]
 gi|94731295|emb|CAJ54658.1| PleD [Lawsonia intracellularis PHE/MN1-00]
          Length = 360

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 118/248 (47%), Gaps = 23/248 (9%)

Query: 32  SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITI---SLLLGYISGS 88
           SIFF   I  +IF   +F+ Y  +   + +EY+  +N +  I   TI     ++  +  +
Sbjct: 117 SIFF-FAIPYIIFY--LFVIYPFINLCHTIEYLYSKNSNKKIFKTTIFEFKKIISIVQKN 173

Query: 89  ILK--ELF-------ISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDID 137
           I+K  EL+            I +++ ID  +GLL+     + L  Y     L+I+  DID
Sbjct: 174 IIKQQELYHKLQITKTEKKYIQRINSIDYTTGLLDKKCINTYLSKYLGYSVLTILMIDID 233

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILA 196
           +FK  ND FGH  GDK +A ++  +          V R GGEEF A    ++   A I+A
Sbjct: 234 HFKAYNDTFGHVAGDKCLAAVARCIKNALKRKEDIVFRYGGEEFIALLPNTAISGAHIVA 293

Query: 197 NDLRKIIENSQI-NISSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGR 252
             +   +   +I N +S     +T+S GI E     H  PI   ++ AD ALY AK +GR
Sbjct: 294 QRIHNSLTQMKIPNTTSTVYPFLTVSIGINEVLPYKHTTPIDA-VHHADIALYTAKHNGR 352

Query: 253 NRVVCFSD 260
           ++    S+
Sbjct: 353 SQTAVHSN 360


>gi|89094570|ref|ZP_01167508.1| sensory box/GGDEF family protein [Oceanospirillum sp. MED92]
 gi|89081169|gb|EAR60403.1| sensory box/GGDEF family protein [Oceanospirillum sp. MED92]
          Length = 888

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 91/170 (53%), Gaps = 12/170 (7%)

Query: 99  RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ + +  D L+GL N        +A + S   + +++++++ DID FK +ND FGH VG
Sbjct: 444 KLYKQANFDPLTGLPNRRRAHENLTAELQSAWKHKQQVAVLYLDIDNFKNVNDTFGHMVG 503

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  +S +LV        +  + G+EF   A  +SE +   LA   +KI+++ Q  + 
Sbjct: 504 DQLLQLVSARLVKCCKDLANICHISGDEFLVYARYASESDIRKLA---QKILDDVQTPVL 560

Query: 212 -SGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             G  I +++S GI+        ++ ++  AD ALY +K+ GRNR   F 
Sbjct: 561 IEGKQIFVSVSIGISRYPEDNNDVTGLVKFADIALYESKREGRNRYSFFD 610


>gi|311032207|ref|ZP_07710297.1| ggdef domain protein, putative [Bacillus sp. m3-13]
          Length = 352

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 6/154 (3%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ L NH +F   L    EK     +   DID FK IND +GH  GDKV+  + + L 
Sbjct: 196 DYLTNLANHRSFQECLRKDLEKEKEFYLALTDIDKFKLINDQYGHVTGDKVLRQIGEILT 255

Query: 164 VVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
            V         R GGEEFA      +E E   + +++++ +  S +    G +  +T+S 
Sbjct: 256 SVLSNKQGKAFRYGGEEFALILYYKNEWEVKEILDEIKQAVA-SYVFYDKGETFSVTMSF 314

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  ++  + P   ++ + D+ LY AK  GRNR++
Sbjct: 315 GSGKQDGERP-DLLVDKVDKLLYTAKNGGRNRII 347


>gi|289825184|ref|ZP_06544492.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 471

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF    A  +  + E  A+ + 
Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRIL 335

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 390

Query: 257 CFS 259
            FS
Sbjct: 391 VFS 393


>gi|209524466|ref|ZP_03273015.1| diguanylate cyclase [Arthrospira maxima CS-328]
 gi|209495257|gb|EDZ95563.1| diguanylate cyclase [Arthrospira maxima CS-328]
          Length = 724

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 90/181 (49%), Gaps = 23/181 (12%)

Query: 93  LFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQIND 144
           L  +YNR + ++S  D L+G  N       L           +K S++  DIDYFK+IND
Sbjct: 548 LLQTYNRKLEKISVTDPLTGCFNRLKIEKCLQEQESLFHRNGQKFSVILCDIDYFKKIND 607

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            FGH  GD V+     ++V +F   +     +GR GGEEF   +  +    A  LA  LR
Sbjct: 608 TFGHLPGDAVLI----EMVALFHQRLRKTDILGRWGGEEFIIISPQTDLWGAKALAEALR 663

Query: 201 KIIENSQINISSGPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + + + +      P++ + T S G+AE       IS +I + D+ALY AK+ GRN  + +
Sbjct: 664 QDLASHKF-----PTVGYQTASFGVAEFHSGNYSISHLISQVDEALYKAKERGRNCAIAY 718

Query: 259 S 259
            
Sbjct: 719 Q 719


>gi|167615854|ref|ZP_02384489.1| GGDEF domain protein [Burkholderia thailandensis Bt4]
          Length = 504

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 10/178 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQI 142
           L++   + +R+ +LSR D L+GL N  A   +L S   +L       SI+F D D+FK+ 
Sbjct: 319 LRDRTAARDRLLELSRTDPLTGLGNRRALDDALQSEWARLQRNDSCLSILFIDADHFKRY 378

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND  GH  GD  +  L+  +    G +     R GGEEF A    + E  AA +A  +R 
Sbjct: 379 NDAHGHTQGDLALKRLAACIARHAGRSGDLAARYGGEEFVAILPDADEAAAARIAESIRA 438

Query: 202 IIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I ++    ++ P    T+S G   A R     +   +  AD ALY AK  GR+R V 
Sbjct: 439 GIRDATRAGATPPIPRFTVSVGCATARRGAHASLDAFVRAADDALYRAKADGRDRTVA 496


>gi|153003013|ref|YP_001377338.1| diguanylate cyclase [Anaeromyxobacter sp. Fw109-5]
 gi|152026586|gb|ABS24354.1| diguanylate cyclase [Anaeromyxobacter sp. Fw109-5]
          Length = 288

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 10/158 (6%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N  AF       ++        L+ +  D+D+FK++ND +GH  GD V+  ++
Sbjct: 132 DPLTGLANRRAFEEALAREVARAAREGGPLAAIALDVDHFKRVNDGYGHAAGDAVLVEVA 191

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218
            +          + R+GGEE AA   G++ + AA  A  +R  +  +   I++G   + +
Sbjct: 192 ARAAQGLRASDLLARVGGEELAALLPGATLEAAAEAAERIRARVAGAP--IAAGELRLRV 249

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T+SAG A     E  +T++ RAD  LY AK++GR+RV 
Sbjct: 250 TLSAGCAALGPGEDGATLLARADARLYEAKRAGRDRVA 287


>gi|77747957|ref|NP_639075.2| response regulator [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|77761313|ref|YP_244860.2| response regulator [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 501

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 85/179 (47%), Gaps = 19/179 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL ++Y  +  ++  D L+GL N         A I      ++ L ++  DIDYFK+ ND
Sbjct: 323 ELRLAYAAVEAIAMQDSLTGLANRRQLDVVLPAEIKRAKRTSQPLGVIMVDIDYFKRYND 382

Query: 145 NFGHPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            +GHP GD   K IA +        G      R GGEE     L  S  +AA+LA   R 
Sbjct: 383 YYGHPAGDLCIKAIANVLKNHTRRAGN--LAARYGGEEL--TVLLPSCDQAAVLAAAERI 438

Query: 202 I--IENSQINISSGPSIHITISAGIAERC--HKE-PISTIIYRADQALYVAKKSGRNRV 255
           +  I   QI     P  ++T+S G       +KE   S ++  AD ALY AK++GRNR 
Sbjct: 439 VESIRGLQIAHDDSPEGYLTVSVGAYSYSAFNKEVDASGLLKCADDALYAAKQAGRNRA 497


>gi|218708995|ref|YP_002416616.1| GGDEF family protein [Vibrio splendidus LGP32]
 gi|218322014|emb|CAV18050.1| GGDEF family protein [Vibrio splendidus LGP32]
          Length = 488

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 10/162 (6%)

Query: 101 SQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            +L+  D ++GLLN     AF  S+  +++  ++  FDID FK IND FGH  GD VI +
Sbjct: 330 KELAAKDPMTGLLNRRGLEAFWRSV-EHDQLFALTVFDIDNFKLINDTFGHDKGDDVIRY 388

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +S Q+     +     R GGEEF     G   +        ++  +  +  NI       
Sbjct: 389 MSRQISNSIRSSDVAARFGGEEFVVYLKGDDRETLMRTLERVKNAVCANSANIVPNG--- 445

Query: 218 ITISAG--IAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            T+S G  I E  H       I   AD+ LYVAK +G++R+V
Sbjct: 446 FTVSGGVCITEVEHNNLSFEEIFKHADEKLYVAKTTGKDRIV 487


>gi|169829655|ref|YP_001699813.1| inner membrane protein [Lysinibacillus sphaericus C3-41]
 gi|168994143|gb|ACA41683.1| Inner membrane protein [Lysinibacillus sphaericus C3-41]
          Length = 505

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 107/217 (49%), Gaps = 11/217 (5%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           Y+    F  +E  L +N     + +TI+L+  ++   ++ ++    ++   L+  D L+G
Sbjct: 285 YVKYANFTKME-ALQKNTKQFWVLLTIALITAFVMLLVINKIL---SKTIHLATFDPLTG 340

Query: 112 LLNHSAFISSLGSYNEKLSI-----VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           + N + +I  + S  +K  +     +  D+D FKQ+ND FGH  GD+++   +  L  V 
Sbjct: 341 VYNRATYIRKMDSLLKKRKLNRPGLLLIDLDNFKQVNDQFGHAEGDQILIGTAKILKKVV 400

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIA 225
               FV R GG+EFA     ++E     +A+ +   I   ++   +     + ++S G A
Sbjct: 401 KKDGFVVRFGGDEFAMVLYDTTEHHMQQVADAILTQIRTLKLEDHAIQKWSVLSVSMGGA 460

Query: 226 ERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSDI 261
              H E     ++ RAD+ALY +K +G+++   F ++
Sbjct: 461 IYHHPEDSEMSLFERADRALYQSKNAGKDQYSSFVEV 497


>gi|95928668|ref|ZP_01311415.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95135458|gb|EAT17110.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 284

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 94/197 (47%), Gaps = 21/197 (10%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---- 128
           I  +T+ LL    +  + +   + Y  I     +D L G+ N       L S  +K    
Sbjct: 81  IFVLTVCLLSARTADDVTRLCHLEYENI-----LDPLLGIYNRRHMDRCLRSEADKTRRY 135

Query: 129 ---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              LS++  D+D+FK++ND +GH VGD+V+  L+  +         V R GGEE      
Sbjct: 136 ALDLSVLLIDVDFFKKVNDTYGHLVGDRVLLALAQMIKGSVRDFDMVFRYGGEEIMVLLP 195

Query: 186 GSSEQEAAILANDL------RKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIY 238
            ++   A  L + L      R ++E  +++     ++ +TIS G++      E    ++ 
Sbjct: 196 YTNSSGAQTLGSRLCQWVSERSLLE--EVHQGQPVNVQVTISIGVSTFDPAVEDEGEMVA 253

Query: 239 RADQALYVAKKSGRNRV 255
           RAD ALY AKK+GRNRV
Sbjct: 254 RADMALYRAKKNGRNRV 270


>gi|324114202|gb|EGC08175.1| diguanylate cyclase domain-containing protein [Escherichia
           fergusonii B253]
          Length = 570

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 100/202 (49%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSA------FISS 121
           L+L+    T  L++ +I    ++  +F+  + +   +  D L  L N  A      F++ 
Sbjct: 362 LTLLWALFTTMLIISWIVIRKMVSNMFVLQSSLQWQAWHDTLIRLYNRGALFEKARFLAQ 421

Query: 122 LGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               N++  S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 ECRENQRPFSVIQVDLDHFKSINDRFGHQAGDRVLSHAAGLISRSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIY 238
                 ++  +A  +A  +R  +   +I I+   ++ I+ S G++  E         +  
Sbjct: 482 CIVLPCANLAQAQEIAERIRLRLNEKEILIARSTTLRISASLGVSSTEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD  LY+AK++GRNR VC SD
Sbjct: 542 LADGRLYLAKQAGRNR-VCASD 562


>gi|323497240|ref|ZP_08102260.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
 gi|323317815|gb|EGA70806.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
          Length = 411

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 113/241 (46%), Gaps = 32/241 (13%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           F+I +A++  I ++ ++   L       Y  +  +S ++ S++  LLL Y+  +      
Sbjct: 180 FAICVASMNRIIDVVVYSAALLASITFVYFHIPYISSMMFSLSGILLLIYLFSA------ 233

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            SY    +L+  D L+ +    A  + L    ++ +I   DID+FK  ND +GH  GD V
Sbjct: 234 -SY----ELAFKDRLTDIPGRLALENDLRYLGKRYTIAMIDIDHFKSFNDTYGHDTGDDV 288

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---- 210
           +  ++ ++  + G    + R GGEEF     G   ++A      LR  IE+ ++ I    
Sbjct: 289 LRLVASKMKGIGGGAR-IYRYGGEEFTVLFKGKDAEQARDHLEILRTSIESYEMIIRDQD 347

Query: 211 ----------------SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
                             G  ++ITIS G+ +    + +S ++ +AD+ALY AK  GRN+
Sbjct: 348 NRPKDSKLGAQKRKRTKDGEIVNITISIGVCDSREVKEVSAVMKQADEALYKAKSLGRNQ 407

Query: 255 V 255
           V
Sbjct: 408 V 408


>gi|315180370|gb|ADT87284.1| GGDEF family protein [Vibrio furnissii NCTC 11218]
          Length = 382

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 87/181 (48%), Gaps = 12/181 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEK------LSIVFFDIDYFKQIN 143
           ++L  +  ++  LS  D L+ L N    +  L +Y NE       L  +  D DYFKQ+N
Sbjct: 193 QQLMQANRQLEALSMTDSLTALPNRRKAMRQLEAYWNESQQQGLPLVCIMIDADYFKQVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GD+V+  L+  L   F +   V RLGG+EF      +       +A   R+ +
Sbjct: 253 DSCGHDAGDRVLMALAYTLKHAFRSDDLVCRLGGDEFLVICPNTDLDGGVHIAELTRQQV 312

Query: 204 ENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            N  +     P    +IS G+AE  H        +I  AD A+Y AKK+G+NR VC +  
Sbjct: 313 NNLLVPTGMEP-WRGSISVGVAE-SHGFMNDHHALIKLADTAVYRAKKAGKNR-VCVAQF 369

Query: 262 E 262
           E
Sbjct: 370 E 370


>gi|56459537|ref|YP_154818.1| signal protein [Idiomarina loihiensis L2TR]
 gi|56178547|gb|AAV81269.1| Signaling protein with a sensor domain, CHASE, GGDEF and EAL
           domains [Idiomarina loihiensis L2TR]
          Length = 712

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 98/211 (46%), Gaps = 28/211 (13%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNR-------ISQLSRIDCLSGLLNHSAFISSL 122
           S+  I I   LLL ++  + +  L  + +R       I   +  D ++ L N  AF+  L
Sbjct: 247 SIYWIIIVAGLLLSFLMTAFMYNLVTAQSRLRSALVTIDHQAHFDSITDLPNRRAFVDYL 306

Query: 123 GSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
               +K      +I+F D+D+FK++NDN GH  GD+++  +SD+L        F+ R+GG
Sbjct: 307 DQLTQKGREQHFAILFIDLDHFKEVNDNLGHDAGDELLVSVSDRLRNQLRGSDFIARIGG 366

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGP------SIHITISAGIAERCHK 230
           +EF       +  +   + NDL      SQIN   S P       I  T S GIA     
Sbjct: 367 DEFVVVINRFTSHQ---IINDL-----ASQINRQLSEPFNLRQNQIQTTCSIGIALYPDD 418

Query: 231 E-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
               S ++  AD A+Y AK +GR     F+D
Sbjct: 419 GIKASELLKNADLAMYAAKTAGRRTHYFFND 449


>gi|16760177|ref|NP_455794.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|25318946|pir||AI0655 conserved hypothetical protein STY1349 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502472|emb|CAD01618.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 660

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF    A  +  + E  A+ + 
Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRIL 335

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 390

Query: 257 CFS 259
            FS
Sbjct: 391 VFS 393


>gi|3392922|emb|CAA04444.1| hypothetical protein [Lactococcus lactis subsp. lactis]
          Length = 239

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 94/188 (50%), Gaps = 19/188 (10%)

Query: 84  YISGSILKELFISYNRISQLSRI------DCLSGLLNHSAFISSLGSYNEK---LSIVFF 134
           Y+  +IL  +F+ Y  I+ + ++      D L+ + N S F + L    +K    S+   
Sbjct: 55  YVISTIL--VFVLYYMINDIKKMQKKATHDYLTKMKNRSEFQAKLEVLQKKKKIFSLAIL 112

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DIDYFK  ND+F H VGD V+  +S  L+   G  +   R+GGEEF   +L   E     
Sbjct: 113 DIDYFKVFNDSFNHLVGDLVLLEVSKVLLSFEGNKINCYRIGGEEF---SLVFEEINFVE 169

Query: 195 LANDLRKI-IENSQINIS----SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           + N L KI +   +INI      G    IT+S G++       I   I  AD ALY AK+
Sbjct: 170 VENKLEKIRLAVQKINIDEMLLDGEVRGITVSIGVSHIKTFSNIENYISSADDALYKAKE 229

Query: 250 SGRNRVVC 257
           +GRN++V 
Sbjct: 230 NGRNQLVV 237


>gi|332140981|ref|YP_004426719.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) and Response Regulator
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551003|gb|AEA97721.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) and Response Regulator
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 427

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 96/195 (49%), Gaps = 19/195 (9%)

Query: 77  TISLLLGYISGSILKE------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL- 129
           T +L+LG  +  I +E      L  +  ++  LS+ D L+GL N    +S L     ++ 
Sbjct: 230 TQTLILG-TADDITREKNQQQALMSAVTKLEYLSQTDSLTGLANRREILSQLSDEIARME 288

Query: 130 ------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                 ++V+ D++ FK+IND +GH VGD  +   S Q+ V+       GR+GG+EF   
Sbjct: 289 RGQKASTLVYVDLNKFKEINDKYGHKVGDNALVEFSQQMKVLLRDSDRFGRIGGDEFVIL 348

Query: 184 ALGSSEQEAAILANDLRKIIENS-QINISSGPSIHITISAG-IAERCHKEPISTIIYRAD 241
             G+ ++E  I      +I ++   +N+++   + IT S G +        +   + +AD
Sbjct: 349 LYGTDDKETEIF---FERIAQHDFTLNVNNTSVVPITFSVGWVTWSAETSTVEEWLDKAD 405

Query: 242 QALYVAKKSGRNRVV 256
           + +Y  K + + +VV
Sbjct: 406 EVMYEKKHNLQGQVV 420


>gi|320334479|ref|YP_004171190.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
 gi|319755768|gb|ADV67525.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
          Length = 576

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 82/184 (44%), Gaps = 26/184 (14%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           ++L++L      ++  +R D L+GL N   F+        +       +++   DIDYFK
Sbjct: 401 ALLQQLRWQAEELAHQARSDALTGLPNRRCFLERFEQERARADRTGAPIAVALIDIDYFK 460

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA---------AAALGSSEQE 191
           ++ND   H +GD V+  +++ L           R GGEEFA          A L      
Sbjct: 461 RVNDEHSHAIGDAVLCRIAELLTQGVRASDTAARYGGEEFALLMPDTDTYGARLTCERLR 520

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
            AI A+D   +  N Q+ +S G  +H+      AER        ++  AD  LY AK  G
Sbjct: 521 VAIAAHDWSTVHPNLQVTLSIG--LHVAHGPEGAER--------MLASADARLYRAKALG 570

Query: 252 RNRV 255
           RNRV
Sbjct: 571 RNRV 574


>gi|303245877|ref|ZP_07332159.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           fructosovorans JJ]
 gi|302492660|gb|EFL52528.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           fructosovorans JJ]
          Length = 357

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 17/166 (10%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I+++S  D L+GL N   F+  L          +E+ ++ F D+D FK +ND FGH  GD
Sbjct: 169 ITRMSLHDGLTGLPNRVLFMDRLRQTLRLAERSHERAAVYFIDLDRFKGVNDAFGHETGD 228

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILAND---LRKIIENSQ 207
           KV+   + +L         V RLGG+EF A   A+G ++    I A     LRK    S 
Sbjct: 229 KVLQETARRLAGCVRRSDTVARLGGDEFVALTPAVGDADHAGVIAAKMVAVLRKPFSVSG 288

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +   G S+ + +      R        ++ RAD A+Y AK +GRN
Sbjct: 289 HDCQLGGSVGVALYPEDGVRA-----GELVRRADAAMYAAKNAGRN 329


>gi|325679388|ref|ZP_08158973.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
 gi|324108985|gb|EGC03216.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
          Length = 499

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 14/194 (7%)

Query: 73  IISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------ 125
           +I++ ++  LG Y+S  + K +    + +   +  D L+G+LN   F    G+       
Sbjct: 294 VIAMVLAATLGMYLSWLLTKPVKAMVSELDNKASTDRLTGILNKLTFEELAGTTLQNSLD 353

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           +E+ ++V  DID FK++ND  GH  GDK++A     L  VF    ++GR+GG+EF     
Sbjct: 354 SERRAMVILDIDDFKRVNDTLGHAAGDKLLAGTGGVLRQVFSDDDYLGRIGGDEFCVLVN 413

Query: 186 GSSEQEAAILAN------DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
            +S+ +   +A+       L K   ++      G  +  +I A +  +  K     +   
Sbjct: 414 TASKDDDEFIAHIKERCEALNKAFHDNSTAAEYGYQVTASIGAALYPKDGK-SFEELYSA 472

Query: 240 ADQALYVAKKSGRN 253
            D+A+Y AKKSG++
Sbjct: 473 CDKAMYRAKKSGKD 486


>gi|229154330|ref|ZP_04282450.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342]
 gi|228629154|gb|EEK85861.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342]
          Length = 566

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 88/172 (51%), Gaps = 7/172 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQAP- 251

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN   CF
Sbjct: 252 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRN-AACF 301


>gi|172039491|ref|YP_001805992.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700945|gb|ACB53926.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 335

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 93/193 (48%), Gaps = 33/193 (17%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQIN 143
           EL  +Y  + +++  D L+G+ N  + I SLG         YN   S++  D+D FK IN
Sbjct: 137 ELKKAYEEMKRIAATDELTGIPNRRS-IFSLGKQEFERSQRYNSSFSLLIIDVDKFKTIN 195

Query: 144 DNFGHPVGDKVIAFL-------------------SDQLVVVFGTPMFVGRLGGEEFAAAA 184
           D +GH +GD+ +  +                    ++ +   G    +GRLGGEEF    
Sbjct: 196 DTYGHDIGDEALKMMVKITLNCLRKVDYIGRLETEEEALAKKG---HLGRLGGEEFVVIL 252

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQA 243
             ++ + A   A  + + +    + +    ++ IT+S GIA    K + +  I+ RAD A
Sbjct: 253 PHTNLKGAYKAAQRVCEAMTKETLQVED-KTVSITVSIGIATYDSKDQKMEDILKRADLA 311

Query: 244 LYVAKKSGRNRVV 256
           L+ AK++GRNRV 
Sbjct: 312 LFAAKENGRNRVA 324


>gi|170741032|ref|YP_001769687.1| diguanylate cyclase [Methylobacterium sp. 4-46]
 gi|168195306|gb|ACA17253.1| diguanylate cyclase [Methylobacterium sp. 4-46]
          Length = 348

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 21/188 (11%)

Query: 92  ELFISYNRISQLSR----------IDCLSGLLNHSAFISSLGSYNEKLS--------IVF 133
           EL  +  RI +L R          +D L+G+ N  AF + L     +          +V 
Sbjct: 162 ELRQAGERIGKLQRNLASVRQEASVDALTGIANRRAFTARLRRQLAQAKAEGAGPFCLVL 221

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D+FK  ND  GH  GD+V+  ++  L        FV R GGEEFA        +   
Sbjct: 222 LDVDHFKLFNDAHGHRTGDQVLRLVARLLTDNVKGRDFVARYGGEEFALILSDVDAESGL 281

Query: 194 ILANDLRKIIENSQ-INISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
            +A  + + +   + I   +G  I  +T+S G+A+    E    +I RAD ALY AK  G
Sbjct: 282 TVAEQICERLRGKRLIKRETGRDIGALTLSGGLAQARPGEAQGALIERADAALYAAKGQG 341

Query: 252 RNRVVCFS 259
           R+R +C +
Sbjct: 342 RDR-ICLA 348


>gi|307293432|ref|ZP_07573278.1| diguanylate cyclase [Sphingobium chlorophenolicum L-1]
 gi|306881498|gb|EFN12714.1| diguanylate cyclase [Sphingobium chlorophenolicum L-1]
          Length = 390

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 78/154 (50%), Gaps = 6/154 (3%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D LSGLLN   F  ++     K     S++  DID+FK +ND  GH +GD+VI  L+  L
Sbjct: 215 DPLSGLLNRRGFDEAIAQRTRKQPIRGSLIVCDIDHFKTVNDAHGHALGDRVIVALARIL 274

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
           +          R GGEEF      +    AA +AND+R+ I   ++    G +  +T S 
Sbjct: 275 MQFAPADAVTARFGGEEFILFLPDTHAARAAAIANDIRESIAQ-EVAGQIGLAQPLTASF 333

Query: 223 GIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G++  +     I   I RAD ALY AK  GRNRV
Sbjct: 334 GLSVVQPGDAAIHEAIARADAALYDAKTRGRNRV 367


>gi|188583583|ref|YP_001927028.1| diguanylate cyclase [Methylobacterium populi BJ001]
 gi|179347081|gb|ACB82493.1| diguanylate cyclase [Methylobacterium populi BJ001]
          Length = 414

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 29/206 (14%)

Query: 76  ITISLLLGYISGSILKELFISYNR------ISQLSRIDCLSGLLNHSAF-------ISSL 122
           I +SL+ G +   +L  +  +  R      ++ L+  D L+GL N  AF       + ++
Sbjct: 181 IQVSLVEGIVVEVLLALMMAAAVRRRREEAMTALAERDGLTGLFNRRAFESRAAGLLGTM 240

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
            +  E  +++  DID FK +ND+FGH VGD+++  L++ L  V  +    GR  G +  A
Sbjct: 241 AARQEPGALLLLDIDRFKAVNDSFGHAVGDRLLVTLAEVLTKVLASGPAEGREAGPQREA 300

Query: 183 --AALGSSE--------QEAAI--LANDLR-KIIENSQINISSGPSIHITISAGIAERCH 229
             A LG  E         EAAI  L   +R ++         +G ++ I  +A  A  C 
Sbjct: 301 IPARLGGDEFVILVSGLDEAAIRDLGAAIRVRMAREGGRERPAGATVSIG-AALFAGGCA 359

Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255
           K  + T+   AD ALY AK+ GR+R+
Sbjct: 360 K--LETLTALADAALYEAKRQGRDRL 383


>gi|152982239|ref|YP_001353357.1| hypothetical protein mma_1667 [Janthinobacterium sp. Marseille]
 gi|151282316|gb|ABR90726.1| Hypothetical protein mma_1667 [Janthinobacterium sp. Marseille]
          Length = 283

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 9/158 (5%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N + F   +S   +  E+    LSI++ D+D FK +ND  GH  GDK++  ++
Sbjct: 122 DVLTGLANRALFHEIVSQQLALCERNKTVLSILYIDLDGFKAVNDKHGHEAGDKLLRAVA 181

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +L         V RLGG+EFA   +G+  + A  +A  + + I    + +    + HI+
Sbjct: 182 SRLKTNSRHSDVVARLGGDEFAMVMVGAHMENARFVAEKMVEAISAPYV-LDDTLTSHIS 240

Query: 220 ISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVV 256
            S G+A        S  +++RAD A+Y AK  GR RV 
Sbjct: 241 ASIGVATYPESGTTSEALLHRADGAMYKAKNLGRRRVA 278


>gi|114799626|ref|YP_758802.1| putative diguanylate cyclase [Hyphomonas neptunium ATCC 15444]
 gi|114739800|gb|ABI77925.1| putative diguanylate cyclase [Hyphomonas neptunium ATCC 15444]
          Length = 253

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 90/166 (54%), Gaps = 8/166 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISS---LGSYNEKLSIVFF----DIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL N  AF ++   L    +  +  F+    D+D FK++ND  GH  GD V
Sbjct: 79  RLANEDELTGLPNRRAFFATASVLQMQADAGAGQFYCAIADVDNFKRVNDAHGHEAGDGV 138

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  L  +      V RLGGEEFA A + +  + A      L + +  +  +  S  
Sbjct: 139 LISVAGILRRLAPPGAIVARLGGEEFALAGVFADARAARAACAALVRAVAAADHSAQS-L 197

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  +TIS G++    +E +S ++ RAD+ALY AK++G+NRV+ + D
Sbjct: 198 TRQVTISLGLSRETGRETLSALLNRADEALYRAKQAGKNRVMMYED 243


>gi|152987228|ref|YP_001350237.1| hypothetical protein PSPA7_4901 [Pseudomonas aeruginosa PA7]
 gi|150962386|gb|ABR84411.1| membrane protein, putative [Pseudomonas aeruginosa PA7]
          Length = 375

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 119/280 (42%), Gaps = 40/280 (14%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYF--SIFFSIF-IATVIFIANIFLFYIGLTPFYGLEYI 64
           +L+ +L H  +L      TFM+++  ++ F +F +   +F     L +I  +  + +E +
Sbjct: 93  WLTYFLYHVDSLRG----TFMVFYVLALLFGVFQLPPRVFARCAALAFIAFSGIHLVEVL 148

Query: 65  ----------LVENLSLVIISITISLLLGYISGSILKELFISY-------------NRIS 101
                      ++ L+L I+ + +SL   Y+     +     Y              ++ 
Sbjct: 149 QRRLELPGRAALQVLALFIVLVWLSLFASYVQAMRQRMRQRRYALQAHQDTLRGMMRQLE 208

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQINDNFGHPVGDKVI 155
            L   D L+GL N   F+   G   E L       +   D+D+FK+IND  GH  GD+V+
Sbjct: 209 DLVATDELTGLFNRRHFMRMAGRALEDLLPNRQHGLALIDLDHFKRINDRHGHAAGDRVL 268

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +            + R GGEEF      +  ++       LR   E ++     G +
Sbjct: 269 QTFAAVARSCLRDGDILARYGGEEFVLLLPHADAEQLERCCERLRLAFEQAE---PVGVA 325

Query: 216 IHI-TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + + ++S G+      + +   + RADQALY AK+ GRNR
Sbjct: 326 VEVLSLSVGMTLLYADDDLDEALQRADQALYRAKRGGRNR 365


>gi|330959085|gb|EGH59345.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 723

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 104/204 (50%), Gaps = 19/204 (9%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SA 117
           LV ++S+  I++  +  L  ++   + +L  +  +I  L+  D L+GL N        S 
Sbjct: 242 LVLDISVDFITLNDTACL-LMNARDIGQLKNAQAQIHHLAYHDPLTGLPNRALLMDRLSQ 300

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
            +S L   N + +++F D+D+FK IND+ GHPVGD V+  ++ +L         V RLGG
Sbjct: 301 QLSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLNVVAARLEASVRQEDTVARLGG 360

Query: 178 EEFAA------AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCH 229
           +EF         +L     +  +L+++LR ++  ++     G  + +T S GI       
Sbjct: 361 DEFVVLICGLDGSLDEVTHKVRVLSDNLRDLL--AEPMFLDGHRLQVTPSIGIVLIPDDG 418

Query: 230 KEPISTIIYRADQALYVAKKSGRN 253
             P + ++ RAD ALY AK SGRN
Sbjct: 419 LTP-ADLLKRADIALYRAKDSGRN 441


>gi|254515654|ref|ZP_05127714.1| diguanylate cyclase (ggdef domain) [gamma proteobacterium NOR5-3]
 gi|219675376|gb|EED31742.1| diguanylate cyclase (ggdef domain) [gamma proteobacterium NOR5-3]
          Length = 334

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 9/156 (5%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q++ +D L+G+ N   F       +S    +    +++ FD++ FK IND FGH  GD+V
Sbjct: 162 QMATLDELTGISNRRGFNMLALHALSLARRHGLTATMLVFDLNNFKVINDTFGHAEGDRV 221

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +A  +D L   F       R GG+EF +  + ++ +E A +    R++I+  + N     
Sbjct: 222 LAAFADLLKEAFRDSDVFARTGGDEFVSLLVDTTAEEVAGVEQRFRQVID--EYNEREKR 279

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
              I  S G A     E + +++ RADQ +YVAK+ 
Sbjct: 280 GYDIEFSVGAATLQPDEELDSLMDRADQLMYVAKRK 315


>gi|220906243|ref|YP_002481554.1| diguanylate cyclase [Cyanothece sp. PCC 7425]
 gi|219862854|gb|ACL43193.1| diguanylate cyclase [Cyanothece sp. PCC 7425]
          Length = 340

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 12/166 (7%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+ ID L+ + N            + LG     LS +  D+D+FK  ND FGH  GD+ +
Sbjct: 169 LATIDNLTQIANRRKLDDYLTEEWARLGRDCLPLSFLLCDVDFFKTYNDTFGHQAGDRCL 228

Query: 156 AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSG 213
             ++  +      P   V R GGEEFA     +    A  +   +R+ +EN   +   + 
Sbjct: 229 QEVAQAIAATVKRPADLVARYGGEEFAVILPNTPLAGALQVGERIRQAVENLCIVQTPTC 288

Query: 214 PSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
           P+  +TIS G+A     +   I+++I  ADQ LY+AK+ GRN  VC
Sbjct: 289 PNPCVTISVGVATAIPGQGMSIASLIASADQCLYLAKQRGRN-CVC 333


>gi|260599727|ref|YP_003212298.1| hypothetical protein CTU_39350 [Cronobacter turicensis z3032]
 gi|260218904|emb|CBA34259.1| hypothetical protein CTU_39350 [Cronobacter turicensis z3032]
          Length = 495

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 93/189 (49%), Gaps = 18/189 (9%)

Query: 90  LKELFISYNRISQ-LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           L++     N I Q L+ +D L+GL N   F       I+   +    +S+V FDIDYFK 
Sbjct: 301 LRDDLTRSNHILQDLALLDGLTGLANRRQFDIYLEQCITRAQATGAPVSLVMFDIDYFKI 360

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMF----VGRLGGEEFAAAALGSSEQEAAILAN 197
            ND  GH  GD  +  + D   ++   P+     V R GGEEFA    G+    A  +A 
Sbjct: 361 YNDTQGHVAGDACLKAVGD---ILRHLPLHNTDRVARYGGEEFAIILPGADAHAAQRVAL 417

Query: 198 DLRKIIENSQINISSGPSIH--ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
              + I +++++  + P     +TISAG A     +    T+  RAD ALY AK++GRN 
Sbjct: 418 RALEAIHHARLSHPATPREEKVLTISAGAATVTGGDVNGETLKSRADDALYQAKRAGRNC 477

Query: 255 VVCFSDIEN 263
           VV  + + +
Sbjct: 478 VVGAAGVSH 486


>gi|159185651|ref|NP_357395.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
 gi|159140785|gb|AAK90180.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
          Length = 664

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 12/176 (6%)

Query: 102 QLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +LS  D L+GL N  A          +     E  +++  D+D+FK+ ND +GH  GDK 
Sbjct: 227 RLSNTDSLTGLQNRRAIDHHLRLLWDNWSKKGEGFAVLLIDVDFFKKYNDRYGHQEGDKC 286

Query: 155 IAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  + + L   +      +GR GGEEF       S+Q+   LA  +R  +E   +     
Sbjct: 287 LMTVGNALQDAIIDHGASIGRYGGEEFIVLVPFKSKQQVGELAETIRHTVEELSLAHDQR 346

Query: 214 PS----IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                 + ++I A          +  II  AD+ALY+AK +GRN +  F   +  T
Sbjct: 347 RDGTFIVTVSIGASFTRPNPDGKLEKIINEADRALYIAKGNGRNCMKLFDPEDPQT 402


>gi|153002300|ref|YP_001367981.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|151366918|gb|ABS09918.1| diguanylate cyclase [Shewanella baltica OS185]
          Length = 328

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 84/170 (49%), Gaps = 9/170 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +L  +  ++ +LS+ D L+ L N   +   L         Y+   S+V  DID FK IND
Sbjct: 144 QLKAANEQLERLSQTDGLTQLHNRRHWQECLDHEYDMYARYSGMASLVMIDIDNFKHIND 203

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           ++GH  GDKVI  ++  L          GR GGEEFA     +S  +A      LR+ I 
Sbjct: 204 SYGHLAGDKVIQHIAHLLSQSLRETDCAGRYGGEEFAVVLPKTSGADAMNFTERLREKIA 263

Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
            S I +     I +T+S G+ E   H    S+ I  +D+ALY AK+ GRN
Sbjct: 264 ASVI-VYESLKISVTVSLGVCEIGSHITSSSSWISCSDKALYEAKQKGRN 312


>gi|82703159|ref|YP_412725.1| diguanylate cyclase [Nitrosospira multiformis ATCC 25196]
 gi|82411224|gb|ABB75333.1| diguanylate cyclase with PAS/PAC sensor [Nitrosospira multiformis
           ATCC 25196]
          Length = 432

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 21/173 (12%)

Query: 96  SYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S  RI  L+  D L+GL N +         I +   Y+ +L+++F D+D+FK IND+ GH
Sbjct: 263 SQKRIEYLAHYDPLTGLPNRALLADRMKTAIENAKRYSFQLAVLFVDLDHFKLINDSLGH 322

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF-------AAAALGSSEQEAAILANDLRK 201
            +GDK++  +++++         V RLGG+EF        AA+  +   E  I A     
Sbjct: 323 EIGDKLLKIVAERMRSRLRQTDTVSRLGGDEFIILLSRINAASDAACVAEKIIAALSQPY 382

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            +E  ++ + +   I I   +G       +  S+++  AD+A+Y AK  GRNR
Sbjct: 383 HLEQHELGLGASIGISIYPDSG-------KDTSSLLRSADEAMYSAKGQGRNR 428


>gi|78066673|ref|YP_369442.1| diguanylate cyclase [Burkholderia sp. 383]
 gi|77967418|gb|ABB08798.1| diguanylate cyclase [Burkholderia sp. 383]
          Length = 466

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 9/177 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S L+EL  +  ++  ++  D ++G  N   FI+ +               ++  D+D FK
Sbjct: 289 SALQELRRTNQKLEYMAATDPMTGASNRRQFIAQVEREMVRAERDGTPFCLLALDLDNFK 348

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH +GD+V+  +  Q +        + R+GGEEF A       + A + A  +R
Sbjct: 349 NINDAYGHQIGDEVLRGVVRQCLDAIRPAGGLARVGGEEFMALLPDMPLEGARMTAERVR 408

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I +S   +     + +T+S G+A+       +  ++   D+ LY AK+ GRNRVV
Sbjct: 409 SSIASSPFGLDF-KRVQVTVSVGVAQYGADGSTVDALLRVVDERLYQAKREGRNRVV 464


>gi|223042742|ref|ZP_03612790.1| ggdef domain protein [Staphylococcus capitis SK14]
 gi|222443596|gb|EEE49693.1| ggdef domain protein [Staphylococcus capitis SK14]
          Length = 356

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 10/203 (4%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y L+E L L+ IS+ I++    I+   +   F   NR     + D L+GL N   F   L
Sbjct: 148 YDLIEILVLIPISLIITIA-SAITFVDIWHFFSLVNRYENEDKYDYLTGLGNVKEFDRHL 206

Query: 123 GSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     N+ L+++  DID FK +ND + H  GD V+  +S  L         + R 
Sbjct: 207 NEVSRIAEEKNQSLALLLIDIDGFKDVNDIYSHQSGDAVLKQMSQLLKNYVPNQFKIFRN 266

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS- 234
           GGEEF+      S  ++  LA ++R  +E S  ++     I +++S G+      +  S 
Sbjct: 267 GGEEFSVVIRNYSLDQSVKLAENIRSGVEKSSFHLPDKEVIKLSVSIGVGYLTQDDRKSQ 326

Query: 235 -TIIYRADQALYVAKKSGRNRVV 256
             +   AD  ++VAK  GRN+V+
Sbjct: 327 RKVFKDADDMVHVAKSEGRNKVM 349


>gi|254447202|ref|ZP_05060669.1| gaf/pas/ggdef domain protein [gamma proteobacterium HTCC5015]
 gi|198263341|gb|EDY87619.1| gaf/pas/ggdef domain protein [gamma proteobacterium HTCC5015]
          Length = 488

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 77/169 (45%), Gaps = 12/169 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           ++ L+  D L+ L     F+  L +         + L+ V  D+D+FK  ND +GH  GD
Sbjct: 317 LATLANTDPLTQLATRRYFMERLSTAIAYCQRQQQPLAYVLLDVDHFKSFNDQYGHLAGD 376

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQ 207
           + +  +   L           R GGEEFA     ++ QEA  +A  LR  IE     +  
Sbjct: 377 EALKRVGSILKHSPREYDLASRYGGEEFALYLPSTTAQEALQVAERLRTAIEEISDLDRP 436

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           I  S G ++    SA   +   K  I  +I RAD ALY AK  GRNR +
Sbjct: 437 ITASLGVALLDPASALPPDSDMKTVIEALIQRADTALYQAKSQGRNRTL 485


>gi|90413551|ref|ZP_01221542.1| hypothetical protein P3TCK_25540 [Photobacterium profundum 3TCK]
 gi|90325483|gb|EAS41966.1| hypothetical protein P3TCK_25540 [Photobacterium profundum 3TCK]
          Length = 284

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 11/163 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEK----LSIVFFDIDYFKQINDNFG 147
           I Y R+  ++  D LSGL N S+F   +    + +E+    L +V FD+D FKQ+ND +G
Sbjct: 125 IEYRRVKNMAMRDHLSGLGNRSSFEQDIQHSIAMSERRDVGLVVVIFDLDNFKQVNDRYG 184

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GDKVI   +  L     T     RLGG+EF      ++++ A  +A  +  +I + Q
Sbjct: 185 HLDGDKVIRRFAIALKHAVRTSDRCYRLGGDEFIMLLQPATDKSAQKVAERVHHLINDDQ 244

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
               +  ++ ++ S G A+    +   ++I RAD+ LY  K++
Sbjct: 245 ----ALRTLQVSSSHGYAQYQKGDTTLSLIDRADRQLYKQKRN 283


>gi|15889298|ref|NP_354979.1| GGDEF family protein [Agrobacterium tumefaciens str. C58]
 gi|15157134|gb|AAK87764.1| GGDEF family protein [Agrobacterium tumefaciens str. C58]
          Length = 579

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 6/164 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-----GSYN-EKLSIVFFDIDYFKQINDNFGHPVG 151
            ++  LS  D L+G+ N  A   S+     G  + + L ++  DID+FK IND +GH +G
Sbjct: 405 EQLRTLSETDALTGVFNRRALEKSVRAILSGDEDYQSLGVMIIDIDHFKSINDRYGHAMG 464

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D  +   +  L         + R GGEEF       S   A   A+ LR++IE    +  
Sbjct: 465 DLALQKTASLLKGALRKTDILARYGGEEFVVVLQDVSHATATATADRLRRLIEVQTFDEQ 524

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +G S+  +      E         +I  AD  LY AK++GRNRV
Sbjct: 525 TGLSLTASFGVVWQEARAINSWDELIAIADDRLYEAKRAGRNRV 568


>gi|152964492|ref|YP_001360276.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151359009|gb|ABS02012.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 609

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 18/154 (11%)

Query: 107 DCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GLLN   F  +L         +  L+    D+D+FK +ND  G   GD+++  L+ 
Sbjct: 189 DGLTGLLNRRGFDQALDRAVAAAGPDGSLAAALVDVDHFKAVNDGDGQGAGDRLLRELAA 248

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
           QL         + R GG+EFA    G   +EA  L   LR                 +  
Sbjct: 249 QLTTALPRDAVLARYGGDEFAVLLPGRCGREALDLVEGLRAGTRT------------VAF 296

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           SAG+A     E  + ++ RAD AL+ AK SGR R
Sbjct: 297 SAGVAHLFPGESGADLVRRADAALHAAKVSGRGR 330


>gi|333004226|gb|EGK23757.1| hypothetical protein SFK218_2428 [Shigella flexneri K-218]
          Length = 442

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             + G    V R+GGEEFA A    +  +  ++A  +RK +E          ++++T+S 
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSI 424

Query: 223 GIA 225
           G+ 
Sbjct: 425 GVG 427


>gi|296283401|ref|ZP_06861399.1| diguanylate cyclase [Citromicrobium bathyomarinum JL354]
          Length = 418

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 12/190 (6%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFF 134
           ++ LL     S  K +  +Y R   LS  D L+ L N       L  +      ++++  
Sbjct: 208 MTALLATQEASDAKAVSKTYLR---LSLTDALTRLPNRRLLTERLERWLASRRPVALMMI 264

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           DID+FK  ND  GH  GD  +  ++++   +      +   R GGEEF  A   S ++  
Sbjct: 265 DIDHFKPYNDTLGHTAGDDCLQMVANRFSQIAAQTKGVLCARYGGEEFTFALRDSDQKRL 324

Query: 193 AILANDLRKIIENSQINISSGP--SIHITISAGIAERCHKEPIS--TIIYRADQALYVAK 248
             +A  + + IE+  I     P  +  IT+S G+A+  + E  +   ++  AD+ALY AK
Sbjct: 325 VSVARTISQAIEDLAIPHPGRPDGTAIITVSVGVAQCRNGETCAFKDLVNAADRALYAAK 384

Query: 249 KSGRNRVVCF 258
             GRNRV  +
Sbjct: 385 TKGRNRVAMY 394


>gi|262280456|ref|ZP_06058240.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258234|gb|EEY76968.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 575

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 9/164 (5%)

Query: 99  RISQLSRIDCLSGLLNH---SAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152
           ++  ++  D L+G+ N    S ++  + SY +K +   ++  DID FKQ+ND +GH VGD
Sbjct: 412 QLKNIANTDPLTGVSNRLALSEYLKIVESYPQKFTQTCLMIIDIDRFKQVNDQYGHIVGD 471

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
            VI  +++QL     +   + R GG+EF          +A +LA  +R  I   +I++S 
Sbjct: 472 HVIVNIAEQLKQNIRSSDLIVRYGGDEFLILLEQMQFVDARLLAEKIRIAISLQEIDLSG 531

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S   +H+++S G A          ++ RAD++L  AK  GRN V
Sbjct: 532 SDEKLHVSVSIGFA--IGAASWIELLERADRSLLRAKARGRNAV 573


>gi|256043514|ref|ZP_05446441.1| GGDEF domain-containing protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260564708|ref|ZP_05835193.1| diguanylate cyclase [Brucella melitensis bv. 1 str. 16M]
 gi|265989931|ref|ZP_06102488.1| diguanylate cyclase [Brucella melitensis bv. 1 str. Rev.1]
 gi|260152351|gb|EEW87444.1| diguanylate cyclase [Brucella melitensis bv. 1 str. 16M]
 gi|263000600|gb|EEZ13290.1| diguanylate cyclase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 240

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 23/229 (10%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY- 97
           IAT+I I+       G+    G++   V  L  +++   I++ LG    S L+EL  SY 
Sbjct: 21  IATIISIS----LSTGIRFALGVKSDTVTILVRLLLPFLIAMPLGVFWFSRLEELERSYR 76

Query: 98  ------NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFGH 148
                 N +++++ +D L+GLLN  +FI    + N+     +F   D+DY KQIND +GH
Sbjct: 77  TAVKRANELARVASVDPLTGLLNRRSFIQQFNAANKAGVRGWFLIVDVDYLKQINDQYGH 136

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILAN-DLRK--IIE 204
           P GD  I  ++  L     +   + R+GG+EF A    G+     ++L++  LR   ++ 
Sbjct: 137 PAGDDAIIAVAQALEDSLSSDSLIARIGGDEFCAFVPKGAINDVDSVLSDISLRADGLLR 196

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             + N+ S     +T+S G       +    ++  AD+ LY  KKS R 
Sbjct: 197 EKRPNVGS----SLTVSVGRISCKTGQIFEEVLSIADEQLY-RKKSQRQ 240


>gi|237667012|ref|ZP_04526996.1| diguanylate cyclase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|237655360|gb|EEP52916.1| diguanylate cyclase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 664

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 14/170 (8%)

Query: 94  FISYNRISQLSRIDCLSGLLN--HSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFG 147
            ISY +I +L   +   GL    +  + + L  +    +   SI+  DID FK +ND +G
Sbjct: 499 LISYTKIKKLRAQNQKDGLTKSYNRFYFNELYEHFIREDTNFSIMMIDIDNFKSLNDTYG 558

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  + + +  +      + R GGEEF   +   S QE   ++  +R  +E   
Sbjct: 559 HQFGDTVLINVCNTISKIIDKDSKLCRYGGEEFVVVSSNKSRQELEEISEKIRVEVE--- 615

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
             I    ++ +T+S G+A  C +KE    +   AD+ LY AK +G+N+VV
Sbjct: 616 -KIEFQENVKVTLSIGVAMSCDNKEDTLNV---ADKNLYTAKTTGKNKVV 661


>gi|213859814|ref|ZP_03385518.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 437

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A   FI+ ++ S  E ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF    A  +  + E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I+++       H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFS 259
            FS
Sbjct: 394 VFS 396


>gi|218531236|ref|YP_002422052.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylobacterium chloromethanicum CM4]
 gi|218523539|gb|ACK84124.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylobacterium chloromethanicum CM4]
          Length = 1003

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 11/163 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFF--DIDYFKQINDNFGHPVGD 152
           I  ++R D L+GL N   F  +L     G+  +  S+V    D+D FK +ND FGHP GD
Sbjct: 576 IEHMARHDALTGLPNRRLFQETLAREIDGARRDGGSVVVLCCDLDRFKAVNDTFGHPAGD 635

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
            ++  ++ +L         V RLGG+EFA       +Q    +A   R++I+ +   +  
Sbjct: 636 ALLRVIAGRLRATLREGDVVARLGGDEFAIILPSRGKQRR--IAAFARRLIQAAGRPVDL 693

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
            G +  + +S G+A    H +   T+   AD ALY AK SGRN
Sbjct: 694 GGRATTVGVSIGVAVWPKHGDSADTLFKNADIALYRAKDSGRN 736


>gi|163852480|ref|YP_001640523.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163664085|gb|ABY31452.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 1003

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 11/163 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFF--DIDYFKQINDNFGHPVGD 152
           I  ++R D L+GL N   F  +L     G+  +  S+V    D+D FK +ND FGHP GD
Sbjct: 576 IEHMARHDALTGLPNRRLFQETLAREIDGARRDGGSVVVLCCDLDRFKAVNDTFGHPAGD 635

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
            ++  ++ +L         V RLGG+EFA       +Q    +A   R++I+ +   +  
Sbjct: 636 ALLRVIAGRLRATLREGDVVARLGGDEFAIILPSRGKQRR--IAAFARRLIQAAGRPVDL 693

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
            G +  + +S G+A    H +   T+   AD ALY AK SGRN
Sbjct: 694 GGRATTVGVSIGVAVWPKHGDSADTLFKNADIALYRAKDSGRN 736


>gi|89900556|ref|YP_523027.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Rhodoferax
           ferrireducens T118]
 gi|89345293|gb|ABD69496.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 716

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 82/176 (46%), Gaps = 17/176 (9%)

Query: 96  SYNRISQLSRIDCLSGLLNH---SAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGH 148
           +  RI  L+  D L+GL N      F+          +E+L++VF D+D FK IND  GH
Sbjct: 257 TERRIEHLAHHDTLTGLPNRLHLQVFLEQSILIAKRMSEQLAVVFLDLDRFKTINDTLGH 316

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLR----KII 203
           PVGD ++  ++D+L         V RLGG+EF     G      A+ +A  +R    +  
Sbjct: 317 PVGDDLLIQVADRLKTSVRQYDMVARLGGDEFVMILRGHDMPSVASAVAEKIRLHLNQPF 376

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  Q  + +  SI I +  G  ER     +  ++  AD A+Y  K  G N    FS
Sbjct: 377 QIGQHTLRTATSIGIALYPGNGER-----MDDLMKHADTAMYFTKSEGGNGFCFFS 427


>gi|119775740|ref|YP_928480.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B]
 gi|119768240|gb|ABM00811.1| GGDEF domain protein [Shewanella amazonensis SB2B]
          Length = 524

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 114/266 (42%), Gaps = 34/266 (12%)

Query: 15  HEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL-VI 73
           H+ ++ SF     ++ F+ F       V+ + ++ L    LTP   +  +LV+  +   +
Sbjct: 253 HKSDIPSFISRESILIFATFM-----VVVLLGSVPLSLFVLTPLGNINRVLVKMTTRGRL 307

Query: 74  ISITISLL---LGYISGSI--LKELFISY-NRISQLSRIDCLSGLLN-----------HS 116
             I  S     L  ++GS   L E+   + N +  LS  D L+G+ N           H 
Sbjct: 308 TKINQSFFIDELHRLTGSFNQLAEMLERHQNYLESLSFKDPLTGIANRRGLEAFASRAHQ 367

Query: 117 AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRL 175
            ++   G+    L  +  D+D FKQ ND  GH  GDK +  ++  L++        V R 
Sbjct: 368 EWLDGKGA----LGFLMVDVDEFKQYNDTQGHTAGDKALISVAQTLLIECRRRGELVTRF 423

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--- 232
           GGEEF     G    +   LA  +   +    I   SG   H+TIS G     H +P   
Sbjct: 424 GGEEFCVVVHGDDTLQMERLAERMLHRVRELAITHPSGQFGHVTISVGGVLFEHYDPQFA 483

Query: 233 ---ISTIIYRADQALYVAKKSGRNRV 255
                 ++  AD+ LY+AK  GRNRV
Sbjct: 484 DTSWQDMLVMADKQLYLAKSEGRNRV 509


>gi|289646337|ref|ZP_06477680.1| GGDEF [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 538

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 10/172 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL ++   +  ++R D L+ L N   F ++           N  ++++  DID+FKQ ND
Sbjct: 341 ELSVARADLEIIARTDSLTHLANRRCFDATFQLEWERASRDNSSIALILLDIDWFKQYND 400

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  ++ ++  +      P     R GGEEF     G+    A  +A ++R  I
Sbjct: 401 CYGHLRGDDCLSQVAGLIGSGIKRPGDLAARYGGEEFVILLPGTDLTGALSVAEEVRLSI 460

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
           EN+ I  S+ P  ++TIS+G+        E  +  +  AD+ LY AK  GRN
Sbjct: 461 ENALIEHSASPLGNVTISSGVVAINALETEGYTAALREADRLLYCAKTRGRN 512


>gi|326319484|ref|YP_004237156.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323376320|gb|ADX48589.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 579

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 11/167 (6%)

Query: 100 ISQL---SRIDCLSGLLNHSAFISS----LGSYNEK---LSIVFFDIDYFKQINDNFGHP 149
           I+QL   S  D L+GL N  AF ++    +    ++   ++++  D+D FK  ND  GH 
Sbjct: 409 IAQLREQSLTDFLTGLPNRRAFFAAARERVAQARQQRFDVALMLLDVDLFKSFNDRAGHA 468

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+ +  ++  +         V R GGEEF       +  E A  A  LR  IE + + 
Sbjct: 469 AGDEALRAVARAVRNTLRPGDLVARYGGEEFVVLLGPCAGPEGAACAERLRHAIETAPVI 528

Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + SG    +T S G+A  + H   +  ++  AD ALY AK  GRNRV
Sbjct: 529 LPSGERFRLTASVGVAVSQRHGLVLDHLLSEADTALYRAKDRGRNRV 575


>gi|261212331|ref|ZP_05926616.1| GGDEF family protein [Vibrio sp. RC341]
 gi|260838262|gb|EEX64918.1| GGDEF family protein [Vibrio sp. RC341]
          Length = 412

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 23/168 (13%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+ +    A    L     K ++   D+D+FK+ ND +GH  GD V+  ++ +L  + 
Sbjct: 241 DPLTQIPGRQALDQDLKHIGRKFTVAMLDVDHFKKFNDTYGHDTGDDVLKLVATRLRQIG 300

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPS-------- 215
           G    V R GGEEF+    G    E      DLR+ IE+ ++   N +  P         
Sbjct: 301 GKAR-VYRYGGEEFSIIYRGKLANEVISFIEDLRQDIESYELVIRNTTKRPKNDNEGAKK 359

Query: 216 ---------IHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
                    + ITIS G+ +   H+ P    +  AD ALY AK++GRN
Sbjct: 360 RSRKSNSDIVTITISIGVCDSSLHRNP-HEALKAADGALYSAKQAGRN 406


>gi|229492218|ref|ZP_04386026.1| diguanylate cyclase [Rhodococcus erythropolis SK121]
 gi|229320844|gb|EEN86657.1| diguanylate cyclase [Rhodococcus erythropolis SK121]
          Length = 469

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 86/167 (51%), Gaps = 11/167 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +++  D L+G L+  AF       + +  +    ++++  D+D+FK INDN GH  GD
Sbjct: 300 LQRIAECDALTGTLSRHAFWTQSQELLDAQHAAQRPIAVMMLDLDHFKSINDNLGHLTGD 359

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+    + L+         GRLGGEEFA AA   + +EA  LA  +R+  E    +I  
Sbjct: 360 SVLEQFGNTLLAATEGLGLSGRLGGEEFAVAAADCTFEEAIQLAERIREAQEAHARSIR- 418

Query: 213 GPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
                 T+S G+A      P + T++  AD A+Y AK+ GRN VV F
Sbjct: 419 --GFAGTVSIGVAWADRAMPGMETLLDIADNAMYQAKRDGRNLVVAF 463


>gi|90577847|ref|ZP_01233658.1| hypothetical protein VAS14_12389 [Vibrio angustum S14]
 gi|90440933|gb|EAS66113.1| hypothetical protein VAS14_12389 [Vibrio angustum S14]
          Length = 350

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRI---DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
           Y+ I Q+ R    D L+GLL+   FI       S    Y   +S++  DID  + IND +
Sbjct: 179 YDAIMQVKRTTTHDYLTGLLSREGFIPLYLNESSRCKRYRRDISMLLIDIDNLRDINDRY 238

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           G  VGDK I  L+  +       + + RL  +EF      +  Q+A  +A  LR  +   
Sbjct: 239 GLDVGDKAIMMLAKCMKETCDADVQIARLSCQEFCILIPNADLQKAEFIAITLRNEVAKW 298

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + + SG  I++TIS GI    +++     I +A+ AL  AK+ G N++
Sbjct: 299 TLELESGHKINMTISVGITTVEYQDFRYDYI-KAESALMRAKRWGYNQI 346


>gi|88798508|ref|ZP_01114092.1| sensor histidine kinase [Reinekea sp. MED297]
 gi|88778608|gb|EAR09799.1| sensor histidine kinase [Reinekea sp. MED297]
          Length = 1072

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 60/199 (30%), Positives = 95/199 (47%), Gaps = 29/199 (14%)

Query: 82   LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVF 133
            LG I    L+E ++ +      ++ D L+GLLN +     L     +L        ++ F
Sbjct: 866  LGLILDRRLREAYLEHR-----NKTDLLTGLLNRAGLFERLKKLFAQLRRDTEQPFALCF 920

Query: 134  FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            FD+D+FK  ND+FGH +GD V+  L+DQ+         + RLGG+EF      +    A 
Sbjct: 921  FDLDHFKYFNDHFGHDLGDGVLKALADQVNTQLRGTDELCRLGGDEFILLLPKTDRASAE 980

Query: 194  ILANDLRK-----------IIENSQINISSGPSIH-ITISAGIA--ERCHKEPISTI--I 237
             L   LR            +I+++  + +  P    IT S G+   +R   + +S I  +
Sbjct: 981  ALVERLRTTLAKPDWWLSLLIDSTSSDANPVPRNEWITASFGVVVLDRWPPDGVSRIDLL 1040

Query: 238  YRADQALYVAKKSGRNRVV 256
             + D A+Y AKK G+NRVV
Sbjct: 1041 AQGDAAMYQAKKQGKNRVV 1059


>gi|330979889|gb|EGH78189.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 530

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 85/172 (49%), Gaps = 17/172 (9%)

Query: 107 DCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L      +  E+  LS++  D D+FK+ ND++GH  GD+ +  L+
Sbjct: 336 DKLTGLANRRRFDQFLEVEFKRARRERSLLSLILIDADHFKRYNDHYGHLAGDECLIALA 395

Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +      P  V  R GGEE A    G+ E  A  +A  + + I + QI   + P   +
Sbjct: 396 RVVEQFIRRPSDVAARYGGEEIAVVLPGTDESNARQVAEKILQAIRDEQIEHPASPFGIV 455

Query: 219 TISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           TIS G+A     +R   +    +I  AD+ALY AK  GRNRV   S  EN T
Sbjct: 456 TISLGVATFVGTDRQLDQ--RGLIELADRALYAAKSQGRNRVNVAS--ENAT 503


>gi|167648073|ref|YP_001685736.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Caulobacter sp. K31]
 gi|167350503|gb|ABZ73238.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Caulobacter sp. K31]
          Length = 692

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 9/168 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+GL N + F       + +     E   ++  D+D+FK IND  GH  GD
Sbjct: 264 VENLAFKDPLTGLPNRAYFNRKFQEAVDASEIMGELFGLIMIDVDHFKDINDTLGHDAGD 323

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS 211
            ++  L++ L   F +   V RLGG+EFA    G  SE +     N L+ ++     +  
Sbjct: 324 ALLKRLAEMLHAAFRSGDTVARLGGDEFAVILRGLHSEADMMRPVNALQDLLRRPIEHGG 383

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              S+  +I A +      +P S +I  AD ALY AK  GRNR V F+
Sbjct: 384 RSFSVSASIGAALHGDLDADP-SHMIKNADIALYRAKDEGRNRSVVFT 430


>gi|114561735|ref|YP_749248.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114333028|gb|ABI70410.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 488

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 66/127 (51%), Gaps = 6/127 (4%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +S++  DID+FK IND  GH +GDK++  ++  L         V R GGEEF        
Sbjct: 363 MSLIIIDIDFFKAINDKHGHTIGDKILVQVAQVLQASVRELDVVARWGGEEFVVVC---- 418

Query: 189 EQEAAIL-ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
            Q  A+  A +L + I +   +     +I +T S GIA     EPI     RAD ALY A
Sbjct: 419 -QHVALHDATELCQRITDELSHFHFYHNIKVTCSFGIALLGENEPIQACFERADAALYKA 477

Query: 248 KKSGRNR 254
           K+SGRN+
Sbjct: 478 KQSGRNQ 484


>gi|330943949|gb|EGH46156.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 530

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 85/172 (49%), Gaps = 17/172 (9%)

Query: 107 DCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L      +  E+  LS++  D D+FK+ ND++GH  GD+ +  L+
Sbjct: 336 DKLTGLANRRRFDQFLEVEFKRARRERSLLSLILIDADHFKRYNDHYGHLAGDECLIALA 395

Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +      P  V  R GGEE A    G+ E  A  +A  + + I + QI   + P   +
Sbjct: 396 RVVEQFIRRPSDVAARYGGEEIAVVLPGTDESNARQVAEKILQAIRDEQIEHPASPFGIV 455

Query: 219 TISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           TIS G+A     +R   +    +I  AD+ALY AK  GRNRV   S  EN T
Sbjct: 456 TISLGVATFVGTDRQLDQ--RGLIELADRALYAAKSQGRNRVNVAS--ENAT 503


>gi|330872777|gb|EGH06926.1| response regulator/GGDEF domain-containing protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 334

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 82/169 (48%), Gaps = 11/169 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L   D L+GL N   F   L            +LS++  D+DYFK  NDNFGH  GD
Sbjct: 165 LQRLMNSDGLTGLSNRRHFDEYLELEWRRATRDQAQLSLLMIDVDYFKAYNDNFGHLEGD 224

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  ++  +      P     R GGEEFA     +S   A +LA  LR+ +    I +I
Sbjct: 225 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVAGMNIPHI 284

Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
           +  P   +T+S G+A    +       +I  AD+ LY+AK +GRN+V  
Sbjct: 285 APVPGSSLTVSIGVATVTPQVGRHSRQLILDADKGLYLAKNNGRNQVAA 333


>gi|308188100|ref|YP_003932231.1| hypothetical protein Pvag_2622 [Pantoea vagans C9-1]
 gi|308058610|gb|ADO10782.1| Uncharacterized signaling protein [Pantoea vagans C9-1]
          Length = 693

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 101/201 (50%), Gaps = 14/201 (6%)

Query: 64  ILVENLSLVIISITI--SLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFIS 120
           + V  ++L I+ IT+  S+L   +  + L       N+ + QL+  D L+ L N      
Sbjct: 217 VWVSLITLSILGITLLSSMLDAQVRAARLATRLNRANQELRQLAMHDNLTALPNRVMLEQ 276

Query: 121 SL------GSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L       + NE + ++++ D+D FK +ND +GH VGD+++  ++++L       M + 
Sbjct: 277 QLDLAIKQATLNEDRFAVIYMDLDGFKAVNDTWGHHVGDRLLVAVAERLRSQLSNTMLLV 336

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEP 232
           RLGG+EF   A       A  LA  L K+I  S   +     +H+++SAGIA    H   
Sbjct: 337 RLGGDEFVLMA-ECDISPARQLAQKLVKVI-GSPFELDR-YVLHVSLSAGIAIFPLHGRS 393

Query: 233 ISTIIYRADQALYVAKKSGRN 253
              +++ AD A+Y  K SGRN
Sbjct: 394 RQELLFNADAAMYHTKHSGRN 414


>gi|303326534|ref|ZP_07356977.1| putative diguanylate cyclase/response regulator [Desulfovibrio sp.
           3_1_syn3]
 gi|302864450|gb|EFL87381.1| putative diguanylate cyclase/response regulator [Desulfovibrio sp.
           3_1_syn3]
          Length = 536

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 115/257 (44%), Gaps = 29/257 (11%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGL-----------TPFYGLEYILVENLSLVIIS 75
           F I  ++  ++ + TV  +    L  I L           +P   L  + +  L  ++  
Sbjct: 283 FYISIALLAAMVLGTVAVLHRHILSPISLAAQELRQIRFGSPAKALPPVRIRELQQLLD- 341

Query: 76  ITISLLLGYI------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--E 127
             +  L GY+      SG++ +E     N+   LS +D L+G+ N  +F + L       
Sbjct: 342 -LVPSLRGYLKDLAARSGALEQE----KNKYENLSLVDALTGVANRRSFDARLAQSACCA 396

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDK-VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
            + ++  D+D FK  ND+ GH  GDK ++A        ++     + R GGEEFA     
Sbjct: 397 SVGMLMIDVDLFKNYNDSLGHLAGDKCLVAVARAMQATLYRHDDTLFRYGGEEFAVILED 456

Query: 187 SSEQEAAILANDLRKIIENSQI---NISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              Q+A  +A  +   I + ++   + +  P + ++I   +A R      + ++ RAD+A
Sbjct: 457 VVAQQALAVAERIMDRIRSLRLPHPDSAVAPYVTVSIGVAVARRGEGCSGAELVARADKA 516

Query: 244 LYVAKKSGRNRVVCFSD 260
           LY AK  GR+R+  + D
Sbjct: 517 LYRAKAGGRDRICLYGD 533


>gi|300313993|ref|YP_003778085.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           domain-containing protein [Herbaspirillum seropedicae
           SmR1]
 gi|300076778|gb|ADJ66177.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domain
           protein [Herbaspirillum seropedicae SmR1]
          Length = 573

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 88/181 (48%), Gaps = 12/181 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           +EL  +  ++  LS  D L+G+ N   F  +L +         + L+++  D+DYFK+ N
Sbjct: 389 RELERANRKLEALSATDGLTGVANRRRFDEALANEMRRAVRSGQSLALLMLDVDYFKKYN 448

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+ +  ++  L          V R GGEEF+         +A   A ++ + 
Sbjct: 449 DRYGHLAGDECLRIVARVLQKSSRRATDLVARYGGEEFSVIIAECDTTQALQQAENICQA 508

Query: 203 IENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I   ++  +  P  +I+ S G+A      H  P   ++  ADQALY AK  GRNRVV  S
Sbjct: 509 IFELKLPHADSPFGYISASIGVAVLLPDEHTAP-EQMVRIADQALYHAKYQGRNRVVLGS 567

Query: 260 D 260
           D
Sbjct: 568 D 568


>gi|289625729|ref|ZP_06458683.1| GGDEF [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|330869667|gb|EGH04376.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 538

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 10/172 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL ++   +  ++R D L+ L N   F ++           N  ++++  DID+FKQ ND
Sbjct: 341 ELSVARADLEIIARTDSLTHLANRRCFDATFQLEWERASRDNSSIALILLDIDWFKQYND 400

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  ++ ++  +      P     R GGEEF     G+    A  +A ++R  I
Sbjct: 401 CYGHLRGDDCLSQVAGLIGSGIKRPGDLAARYGGEEFVILLPGTDLTGALSVAEEVRLSI 460

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
           EN+ I  S+ P  ++TIS+G+        E  +  +  AD+ LY AK  GRN
Sbjct: 461 ENALIEHSASPLGNVTISSGVVAINALETEGYTAALREADRLLYCAKTRGRN 512


>gi|262165611|ref|ZP_06033348.1| GGDEF family protein [Vibrio mimicus VM223]
 gi|262025327|gb|EEY43995.1| GGDEF family protein [Vibrio mimicus VM223]
          Length = 384

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 10/167 (5%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           I ++R+  +   D L+G  N   F       L   +    +   DID+FKQIND++GH +
Sbjct: 216 IEWHRLRSIR--DELTGAFNRRYFKEQVQRQLNQSDTPYVVALIDIDHFKQINDSYGHDM 273

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQIN 209
           GD VI+F+  +L  +  T   V R GGEEFA  A    +E+  A+  +    I   SQ  
Sbjct: 274 GDAVISFVVRKLESLNLTDCLVARYGGEEFAVFAREADAERVKAVFCSVCDAI---SQGF 330

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                S+ +++S G             + +AD A+Y AK+ GRNRV+
Sbjct: 331 CIENQSLKVSVSIGAVLFDTPFDYGEALRKADSAMYQAKEQGRNRVM 377


>gi|16329566|ref|NP_440294.1| PleD gene product [Synechocystis sp. PCC 6803]
 gi|1652049|dbj|BAA16974.1| PleD gene product [Synechocystis sp. PCC 6803]
          Length = 481

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 13/176 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           + ++  L+ +D L+G+ N              L  +++ LS++  DID+FKQ ND +GH 
Sbjct: 307 FAQVHYLANMDGLTGIANRRYLDHFLEQQWQKLAKHHQYLSLILCDIDFFKQYNDTYGHL 366

Query: 150 VGDKVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
            GD+ +  +++ L  V+  GT +   R GGEEFA     +++Q    +   L+ + + +Q
Sbjct: 367 EGDECLKKVANLLKKVMRRGTDL-TARYGGEEFALVLPQTNKQGCQNVVIHLQSVFKQAQ 425

Query: 208 INISSG---PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           I   S    P + ++I +         P   +I  ADQAL+ AKK+GRN    F+D
Sbjct: 426 IPHRSSIIQPYLTLSIGSATMVPLPNVPPKQLIDWADQALFKAKKAGRNCHFSFAD 481


>gi|89094950|ref|ZP_01167881.1| PAS:GGDEF protein [Oceanospirillum sp. MED92]
 gi|89080816|gb|EAR60057.1| PAS:GGDEF protein [Oceanospirillum sp. MED92]
          Length = 892

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 11/165 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFF-DIDYFKQINDNFGHPVGD 152
           I QL+  D L+GL N  +    L S      +  +L  VFF D+D FK +ND  GH  GD
Sbjct: 452 IHQLAFYDSLTGLPNRRSLQERLDSALSSCRHTRQLGAVFFIDLDNFKNLNDTAGHDQGD 511

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDL-RKIIENSQIN 209
           K++  ++++L         V RLGG+EF      LG  E        D+  K+I   Q  
Sbjct: 512 KLLVEVANRLNSCVRNADMVARLGGDEFIVILENLGVDESNVLAQVKDIVAKVILTIQAP 571

Query: 210 ISSG-PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           ++ G  + H T S GIA    K+    ++ R+D A+Y AK SG+N
Sbjct: 572 LTIGTQAYHPTCSIGIALFSEKDFSDEVMKRSDMAMYQAKSSGKN 616


>gi|331018627|gb|EGH98683.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 429

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 11/146 (7%)

Query: 116 SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
           S  +S L   N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         V RL
Sbjct: 5   SQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSVIAARLEASVRQEDTVARL 64

Query: 176 GGEEFA------AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ER 227
           GG+EF         +L     +  +LA++LR ++  ++     G  + +T S GI     
Sbjct: 65  GGDEFVVLICGLEGSLEHVTHQVRVLADNLRVLL--AEPMFLDGHRLQVTPSVGIVLIPD 122

Query: 228 CHKEPISTIIYRADQALYVAKKSGRN 253
               P + ++ RAD ALY AK SGRN
Sbjct: 123 DGLTP-ADLLKRADIALYRAKDSGRN 147


>gi|322834728|ref|YP_004214755.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Rahnella
           sp. Y9602]
 gi|321169929|gb|ADW75628.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Rahnella
           sp. Y9602]
          Length = 697

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 127/276 (46%), Gaps = 45/276 (16%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTP------------ 57
           ++W+    NL   SP+  ++  S       A V+  A + + YIG+              
Sbjct: 156 ALWMAF--NLRHQSPNVRLLRISA------AVVMGAAIVGMHYIGMAAAQFPMDSHSMAA 207

Query: 58  FYGLE------YILVENLSLVIISITISLLLGYISG--SILKELFISYNR-ISQLSRIDC 108
           F G++       ++V  L+++ I++ IS+L G +    SIL       NR ++QL+  D 
Sbjct: 208 FSGVDNNWLALLVIVVTLAILAITLIISILDGRMQARTSILASSLAQANRELTQLALHDN 267

Query: 109 LSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ L N       L    +K S       ++FFD+D FK +ND FGH +GD+++  ++++
Sbjct: 268 LTHLPNRLLLEDRLSQAFQKASRGESQFAVLFFDLDGFKAVNDAFGHHIGDQLLISVTER 327

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN----SQINISSGPSIH 217
           L         + RLGG+EF      +   +A+ LA+ L  +I      S+  +    S+ 
Sbjct: 328 LQSQLRATDTLARLGGDEFVLLVEITEPTDASQLADKLVHLIARPFYVSRYELLVSASVG 387

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           I +  G  E   +     ++  AD A+Y  K SGRN
Sbjct: 388 IAVYPGDGENERE-----LMLNADAAMYHTKNSGRN 418


>gi|304412089|ref|ZP_07393699.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica OS183]
 gi|307305984|ref|ZP_07585730.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica BA175]
 gi|304349639|gb|EFM14047.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica OS183]
 gi|306911477|gb|EFN41903.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica BA175]
          Length = 310

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 80/164 (48%), Gaps = 16/164 (9%)

Query: 106 IDCLSGLLNHSAFISSLGS------YNE-KLSIVFFDIDYFKQINDNFGHPVGD----KV 154
           +D L+G+ N   F   L         NE  LS+V  D+D+FK+ ND +GH  GD    +V
Sbjct: 146 LDSLTGVANRRQFEQRLPEIWKHCCRNELALSVVMLDVDFFKRFNDRYGHQEGDQCLRQV 205

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
              +SD L        FV R GGEEF      +    A   A  +   ++   +      
Sbjct: 206 AKAISDSLQRATD---FVARYGGEEFICILPETKLAGAIHTAQKIVNAVQALHLEHLESS 262

Query: 215 SIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
              +TISAG+A    K  ++  T+I  ADQ LY+AK+SGRN+VV
Sbjct: 263 FQEVTISAGVASVLPKSDLTWQTLIETADQQLYLAKESGRNQVV 306


>gi|298252160|ref|ZP_06975963.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Ktedonobacter racemifer DSM 44963]
 gi|297546752|gb|EFH80620.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Ktedonobacter racemifer DSM 44963]
          Length = 923

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 13/189 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           ++L     ++L+E    + + +QL+  D ++GL NH A +++L           E  +++
Sbjct: 513 IILAQRQQALLQERDTLFRQHAQLAVTDPVTGLPNHRALMNALDELLAQSRERGETCALL 572

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F D+D FK +ND +GH  GD  +  + + L         VGR GGEEF   A   S  +A
Sbjct: 573 FIDLDSFKHVNDTWGHQAGDFFLHEVGENLRQAVSPQAVVGRYGGEEFVVIAPNISLLQA 632

Query: 193 AILANDLRKIIENS----QINISSGPS-IHITISAGIA-ERCHKEPISTIIYRADQALYV 246
             LA  +R  ++ +      N  S P  + +T S G+     H     T++  AD+ +Y 
Sbjct: 633 GELAEHVRVQLQQALHAWSPNEHSPPVYVRLTASTGVVLYPFHGANRGTLLEAADRLMYQ 692

Query: 247 AKKSGRNRV 255
           AK+ GRN V
Sbjct: 693 AKQGGRNCV 701


>gi|260770141|ref|ZP_05879074.1| GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260615479|gb|EEX40665.1| GGDEF family protein [Vibrio furnissii CIP 102972]
          Length = 660

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 12/176 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISS----LGSYNEKL---SIVFFDIDYFKQINDNFGHPVG 151
           R++ L+  D L+GL N S         L S +  L   ++++ D+D FKQ+ND+FGH  G
Sbjct: 485 RLAYLAHHDSLTGLANRSELYRVVEDILASNHNTLVPFALIYLDLDGFKQVNDSFGHDAG 544

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  +S++L+    +   V RL G+EF      S       LAN L  +I  +Q  + 
Sbjct: 545 DEVLKQVSERLLSQVRSHDLVARLSGDEFVLVIYPSERDSVTHLANRLLTVI--AQDMVY 602

Query: 212 SGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            G  + +  S G+   +  + + + T++  AD A+Y AK +G+ R +        T
Sbjct: 603 RGQVLRVGASMGVYYVDDANLD-LDTVMKSADSAMYQAKCAGKGRYILMDHTRQRT 657


>gi|241766741|ref|ZP_04764574.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii
           2AN]
 gi|241362895|gb|EER58623.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii
           2AN]
          Length = 310

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 13/162 (8%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N   F + L    +        LS++ FD+D+FK  ND +GH  GD+ +  ++
Sbjct: 146 DGLTGVNNRRKFDAVLQREWQDARHEVRPLSLLLFDVDFFKHYNDCYGHVEGDECLRRVA 205

Query: 160 DQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIH 217
             L      P  FV R GGEEF      S  + A  +A   R+ +  +QI  +  P    
Sbjct: 206 QALTRATHRPGDFVARYGGEEFVLLLPASDARAALTVAERCRQEVFKAQIPHAKSPIGQL 265

Query: 218 ITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +T+SAG+       H +P+   +   D+ LY AK  GRNR+V
Sbjct: 266 LTLSAGVGTAIPAAHDDPVR-FLEEVDRRLYRAKHEGRNRIV 306


>gi|153007631|ref|YP_001368846.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC
           49188]
 gi|151559519|gb|ABS13017.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Ochrobactrum anthropi ATCC 49188]
          Length = 707

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 87/170 (51%), Gaps = 23/170 (13%)

Query: 98  NRISQLSRIDCLSGLLNHSAF---ISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            R++ ++  D L+GL N + F   + SL   G  +E  ++ + DID+FK INDN GH  G
Sbjct: 266 ERMAHIAMHDSLTGLPNRAYFAHHVESLLKKGGDSEPFALFYLDIDHFKNINDNIGHQAG 325

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN-------DLRKIIE 204
           D+++  ++ +L  +  +  F+ RLGG+EFA      +  + A+ A+       D  +++ 
Sbjct: 326 DQLLQEVARRLKQITTSDEFIARLGGDEFAIVYRSGTLAQIAMFADRILSAFQDPFELVR 385

Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
           NS+          +  S GIA+   H +    ++  AD ALY +K  GR 
Sbjct: 386 NSEF---------VACSMGIAQAPLHGDNPDVLMRNADLALYASKSGGRR 426


>gi|144898932|emb|CAM75796.1| response regulator/GGDEF domain protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 415

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 12/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           +L    + +   +  D L+G+ N  +F       +++      ++++   D+D+FK IND
Sbjct: 243 DLMEQVDALKAAATTDYLTGIPNRRSFFERAQPLLAAAQRGQAEVAVALIDLDHFKSIND 302

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH  GD  +A ++  LV        V R GGEEF   A   + +      + LR  I 
Sbjct: 303 SHGHETGDTALATVARLLVAECRQTDLVARFGGEEFCVLAFNLAGESRDAYFDRLRSRIS 362

Query: 205 NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  ++ +  P   IT+SA I    + +  +  +I  ADQ LY AK+ GRNR VC+ D
Sbjct: 363 DLNLDFNGQP---ITLSASIGVSSNVQLGLDGMIAEADQQLYRAKQEGRNR-VCWLD 415


>gi|83748361|ref|ZP_00945385.1| Sensory transduction protein kinase [Ralstonia solanacearum UW551]
 gi|83724983|gb|EAP72137.1| Sensory transduction protein kinase [Ralstonia solanacearum UW551]
          Length = 816

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 13/172 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----------LSIVFFDIDYFKQIND 144
           +  RI+  +  D L+GLLN   F ++L +  E            L+++  D+D FK IND
Sbjct: 643 TVQRIAWDATHDVLTGLLNRRGFDATLRAQVEAHRGTRAAPRTPLALLMIDLDGFKAIND 702

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD V+  +++++V    T     RLGG+EFA        Q A   A+ +R  + 
Sbjct: 703 CYGHAAGDDVLRGIAERVVQNTRTQDHAARLGGDEFAVILPNCDLQTAVTFADRIRAALA 762

Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
              + +++G    I +S G+ E +      +  + R D A Y AK  GRN +
Sbjct: 763 RQPV-LAAGARAQIALSQGVVELQADDADAAAFLARVDAACYRAKSEGRNTI 813


>gi|47568074|ref|ZP_00238779.1| sensory box protein [Bacillus cereus G9241]
 gi|47555228|gb|EAL13574.1| sensory box protein [Bacillus cereus G9241]
          Length = 562

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 88/172 (51%), Gaps = 7/172 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQAP- 251

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN   CF
Sbjct: 252 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRN-AACF 301


>gi|330831552|ref|YP_004394504.1| GGDEF domain-containing protein [Aeromonas veronii B565]
 gi|328806688|gb|AEB51887.1| GGDEF domain protein [Aeromonas veronii B565]
          Length = 371

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 17/166 (10%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           SR+D L+G+ N +    SL     +       LS+V  D+DYFKQ ND +GH +GD  + 
Sbjct: 200 SRLDGLTGIANRAHLDDSLERAWRRCHRARAPLSLVLVDVDYFKQFNDLYGHQLGDDCLQ 259

Query: 157 FLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN----SQINIS 211
            ++  L  V         R GGEEFA     +  Q A  +A+++R+ ++      Q ++ 
Sbjct: 260 QVAGLLAEVERREDDLAARYGGEEFALLLPCTGMQGALQVADNVRQALKELAIPHQKSLV 319

Query: 212 SGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRV 255
           SG    +T S G+A     +   I+ +I +AD ALY AK +GR+R+
Sbjct: 320 SG---RVTCSFGVATLIPDNSMKIADLIQKADAALYQAKHNGRDRI 362


>gi|288553530|ref|YP_003425465.1| sensory box/GGDEF protein [Bacillus pseudofirmus OF4]
 gi|288544690|gb|ADC48573.1| sensory box/GGDEF protein [Bacillus pseudofirmus OF4]
          Length = 573

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 11/171 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           + + +L+  D L+ L N   F++ L        S  EKL+++F D+D FK +ND  GH  
Sbjct: 140 DEVYRLANEDPLTNLPNRRCFMNYLENKLLHAASSKEKLAVLFIDLDRFKYVNDTLGHLF 199

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQIN 209
           GD+V+  ++++L         + RLGG+EF        E+E  + L  DL  II      
Sbjct: 200 GDRVLKHIAERLQAHLPEKSMIARLGGDEFVVVMTDVKEKEEPVSLTEDLLTIIREPL-- 257

Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           I  G    +T S GIA           ++  AD A+Y AK  G +R+  ++
Sbjct: 258 IMDGFEFTLTGSVGIALSPENGIDAEALLTSADAAMYRAKAKGSDRLEVYN 308


>gi|229158909|ref|ZP_04286966.1| Sensory box protein [Bacillus cereus ATCC 4342]
 gi|228624520|gb|EEK81290.1| Sensory box protein [Bacillus cereus ATCC 4342]
          Length = 735

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 13/177 (7%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQIND 144
           L+    ++  L+  D L+GL N   F   L         S N+ ++++F D+D FK+IND
Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQTSAND-VAVMFLDLDRFKKIND 354

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
             GH VGD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  I+
Sbjct: 355 RLGHDVGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 414

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            N    I  G  + IT S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 415 -NKPFFI-QGEELSITPSIGIAMYPDYGTDVTELMKNADMAMYRAKANGKNRFVFFS 469


>gi|218783110|ref|YP_002434428.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01]
 gi|218764494|gb|ACL06960.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01]
          Length = 450

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 84/178 (47%), Gaps = 22/178 (12%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           ++ +D L+GL    +   ++ +   K  I   DID+FK+ ND +GH  GD+V+  ++ +L
Sbjct: 275 MAYMDELTGLPGRRSLNETMLNLGRKYVIAMIDIDHFKKFNDTYGHKTGDQVLKMIATRL 334

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS---------- 212
             + G      R GGEEF A   G    EA       R  IEN+   I S          
Sbjct: 335 GKMGGGAKTF-RYGGEEFTAIFPGKEIFEALPHIEKYRLDIENTPFIIRSKGRKTSNASA 393

Query: 213 -----GPS---IHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                 P+   + +T+S G+AE  R   +P   ++  AD+ LY AKKSGRN V    D
Sbjct: 394 RGKEPAPTTKRVKVTVSIGVAEPTRALTKP-EQVMKAADKILYKAKKSGRNCVKSSQD 450


>gi|220905529|ref|YP_002480841.1| PAS/PAC sensor-containing diguanylate cyclase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869828|gb|ACL50163.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 977

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 20/174 (11%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +LS+ D L+ L N  AF   +          ++  +++F D+D FK++ND+ GH  GD
Sbjct: 795 LERLSQRDSLTDLYNKVAFREKVMQNMPVRPKGDKTHALLFLDLDNFKELNDSLGHMAGD 854

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII------ENS 206
             +   +D L  +F     VGR GG+EF   A+G +    A  A  + K +      E  
Sbjct: 855 VALIDAADALRRIFRNVDAVGRFGGDEFCVFAMGITRNAVAARAESVLKALAMHFDREGK 914

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +NIS+  SI I +  G +E  ++E +     RAD A Y AK+ G+NR   + D
Sbjct: 915 AVNISA--SIGIYMFDG-SENSYEESLQ----RADNAQYRAKQLGKNRYAFYDD 961


>gi|254475616|ref|ZP_05089002.1| diguanylate cyclase, putative [Ruegeria sp. R11]
 gi|214029859|gb|EEB70694.1| diguanylate cyclase, putative [Ruegeria sp. R11]
          Length = 593

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      SL        S   +LS++  D+D+FK+ NDN GH  GD V+  + 
Sbjct: 410 DPLTGLFNRRHMTDSLRKGISRCQSQGSRLSLIAIDVDHFKKFNDNHGHDAGDMVLRAVG 469

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L           R GGEEF      ++ ++A   A  +R+ +E   +         +T
Sbjct: 470 SVLEQACDGDEVACRPGGEEFTLILPDTTPEDALTRAELVRQAVEEVTVRYGEKALPRVT 529

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           IS G++    H      ++  AD+ALY AK  GRN+V
Sbjct: 530 ISIGVSHYPSHGTMPQDLMRAADEALYEAKGRGRNQV 566


>gi|144900136|emb|CAM77000.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 559

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 10/173 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQ 141
           +  E   ++ RI +LSR D L+GL N  AF   +     +LS       +++ D+D FK 
Sbjct: 374 LANEQITNHERILRLSRTDSLTGLFNRRAFFEEIARRFNRLSREHKPAALIYVDLDNFKA 433

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--L 199
           +ND  GH  GD  +  + D L+        V RLGG+EF A  L ++E++ AI   +  L
Sbjct: 434 VNDVHGHHTGDMALLAVRDLLLKHTRPTDLVARLGGDEF-AIWLEAAEEQIAIRRCEGML 492

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
               E +  + S+   +H+++   +      E +  ++ RAD A+Y  K+ G+
Sbjct: 493 VASAELAPFSGSADKPLHMSLGVAVHAGPSAESLDELVARADTAMYEVKRDGK 545


>gi|54296012|ref|YP_122381.1| hypothetical protein lpp0029 [Legionella pneumophila str. Paris]
 gi|53749797|emb|CAH11177.1| hypothetical protein lpp0029 [Legionella pneumophila str. Paris]
          Length = 976

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 4/137 (2%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           N+KL+++F D+D FKQIND+ GH VGD ++  LS++ + +      + RLGG+EF     
Sbjct: 580 NQKLAVLFLDLDEFKQINDSLGHAVGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILE 639

Query: 186 G-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQA 243
               +++A  +A   R+I   SQ  +     + ++ S GIA    H +   T++  AD A
Sbjct: 640 NIMQDKDAESIAKKCREIC--SQPFVIESQELSVSTSIGIAIYPDHGKDAKTLMRNADTA 697

Query: 244 LYVAKKSGRNRVVCFSD 260
           +Y +K  G+N    F +
Sbjct: 698 MYQSKIRGKNNWTVFQN 714


>gi|301383055|ref|ZP_07231473.1| GGDEF domain protein [Pseudomonas syringae pv. tomato Max13]
 gi|302060211|ref|ZP_07251752.1| GGDEF domain protein [Pseudomonas syringae pv. tomato K40]
 gi|302130646|ref|ZP_07256636.1| GGDEF domain protein [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 398

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 23/216 (10%)

Query: 62  EYILVENLSLVIISITISLLLGYI---SGSILKELFISYNRISQL-----SRIDCLSGLL 113
           ++++ +  +L+ +S  + LL+        S L  LF    R+ Q+     +R D L+ L 
Sbjct: 184 DFVIWQANALLFVSTVMLLLMASYFLERASRLSYLFALRGRLLQVQLLEFARTDALTRLF 243

Query: 114 NHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N       L S  E+       ++I+  DID+FK  NDN+GHP GD  +  L   +    
Sbjct: 244 NRRYQDEVLTSVWERARKKQANVAIILLDIDHFKSYNDNYGHPQGDVCLKLLCKAIQQSA 303

Query: 167 GTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGI 224
                V  R GGEE     + +   +A  +A  L+  +   ++ + + G   H+TIS G+
Sbjct: 304 NDGGAVAFRFGGEE-VLVLMNADADQATKMAETLKATVAALKLPHPALGEDAHVTISLGV 362

Query: 225 AERCHKEPI---STIIYRADQALYVAKKSGRNRVVC 257
           A      P+    T+I  AD ALY AK +GRN V C
Sbjct: 363 AS--GIAPLITYDTLISAADNALYAAKHAGRNCVFC 396


>gi|294636573|ref|ZP_06714936.1| GGDEF domain protein [Edwardsiella tarda ATCC 23685]
 gi|291090191|gb|EFE22752.1| GGDEF domain protein [Edwardsiella tarda ATCC 23685]
          Length = 388

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 78/149 (52%), Gaps = 5/149 (3%)

Query: 107 DCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL N + F++ L S N   E++ ++F D D FK IND +GH  GD V+  ++ +L 
Sbjct: 235 DPLTGLPNRTCFMNMLESLNPQQEQICVMFLDGDGFKSINDGWGHAAGDHVLIEVASRLS 294

Query: 164 VVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                   V RLGG+EFA          EA  +A  + + +    I +++G  + +T S 
Sbjct: 295 KQIRKTDMVARLGGDEFAILLRNIEHTDEAERVAQGILQAVPQP-ITLANGVHVSMTFSI 353

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSG 251
           G+        +S ++ RAD A+Y +K+ G
Sbjct: 354 GLTFSVPDSQLSDLLERADSAMYQSKQRG 382


>gi|156933762|ref|YP_001437678.1| RNase II stability modulator [Cronobacter sakazakii ATCC BAA-894]
 gi|156532016|gb|ABU76842.1| hypothetical protein ESA_01588 [Cronobacter sakazakii ATCC BAA-894]
          Length = 664

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 92/184 (50%), Gaps = 18/184 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A +  +        + ++ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRVLANTDAITGLPNRNAILDMISDAIAKRGDTQVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + RLGG+EF   A  +S  +AA+ A   R
Sbjct: 279 KVNDAYGHMFGDQLLQAVSLAILSCLEKDQVLARLGGDEFLVMATDTS--QAALEAMSSR 336

Query: 201 KIIENSQ------INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            I           I + +G S+ I ++       H E   ++I  AD A+Y AK++GR +
Sbjct: 337 IISRLKHPFRIGLIEVYTGCSLGIALAPQ-----HGEDRESVIRNADTAMYTAKENGRGK 391

Query: 255 VVCF 258
              F
Sbjct: 392 FCVF 395


>gi|89893301|ref|YP_516788.1| hypothetical protein DSY0555 [Desulfitobacterium hafniense Y51]
 gi|219666570|ref|YP_002457005.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2]
 gi|89332749|dbj|BAE82344.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536830|gb|ACL18569.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2]
          Length = 526

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 1/126 (0%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           I+ +D+D FK IND +GH VGD V+  +   +  +  +   + R GG+EF     G  E+
Sbjct: 397 IMIYDLDSFKSINDQYGHSVGDLVLIEVVKAISGMIRSSDKIIRWGGDEFVVIFYGLQEK 456

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKK 249
            A +    +   + + +I ++ G  I IT+S G +  +   E  + ++ RADQALY++K 
Sbjct: 457 NALVFGERILSKVSDLKILVAEGKEIGITLSIGFSFFKETDEDFAKVLKRADQALYLSKS 516

Query: 250 SGRNRV 255
            GRN+V
Sbjct: 517 KGRNQV 522


>gi|89092552|ref|ZP_01165505.1| hypothetical protein MED92_14638 [Oceanospirillum sp. MED92]
 gi|89083064|gb|EAR62283.1| hypothetical protein MED92_14638 [Oceanospirillum sp. MED92]
          Length = 783

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 97/194 (50%), Gaps = 19/194 (9%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEK---LSIVFF 134
           LG    S+ ++L  SY      SR D L+ L N +AF  +    LG    K   +SI++ 
Sbjct: 318 LGRKFQSLYEKLHNSYQESHIQSRTDALTRLPNRAAFYETASIKLGEAERKQSNISIIYI 377

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-------TPMFVGRLGGEEFAAAALGS 187
           D+D FK +ND +GH +GD+++  ++ +L  +         +  +V RL G+EF A    +
Sbjct: 378 DLDNFKFVNDKYGHEIGDELLKAVAIRLAHIISIKWKHTYSDEYVYRLSGDEFIAILPNA 437

Query: 188 SEQEAAILAND-LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245
              +A  L+   L++  +     +   P   +T S GIA        +S +I  AD A+Y
Sbjct: 438 GTVKAQELSQTILKQFADGYHFELGHFP---VTASIGIATYPQDGHTLSQLISNADLAMY 494

Query: 246 VAKKSGRNRVVCFS 259
            AKKSG+N++  +S
Sbjct: 495 QAKKSGKNKLAIYS 508


>gi|315123012|ref|YP_004065018.1| GGDEF family protein [Pseudoalteromonas sp. SM9913]
 gi|315016772|gb|ADT70109.1| GGDEF family protein [Pseudoalteromonas sp. SM9913]
          Length = 506

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 90/182 (49%), Gaps = 11/182 (6%)

Query: 85  ISGSILKELFISYNRISQLSR---IDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDY 138
           +  ++L+ + I  +++ QL +    D L+G  N       +  L       +++  DID+
Sbjct: 327 LKAAMLEGVNILQSKMGQLRQDALTDPLTGAHNRRGLYLLLDKLIQEQIPFAVLEIDIDF 386

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++ND FGH VGD+V+  L+  +  V      V R GGEEF       +   A ++A  
Sbjct: 387 FKRVNDTFGHDVGDEVLKTLTCVIKQVSRKDDIVARTGGEEFLLILPNENSDSAFVIAER 446

Query: 199 LRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           LR  + N+ +         I +S GIA    H + I  +   AD+ALY AK++GRN+ V 
Sbjct: 447 LRNEVANTPMAKVGC----INVSIGIATWPQHSDDIDQVYKCADKALYHAKETGRNKTVI 502

Query: 258 FS 259
            S
Sbjct: 503 AS 504


>gi|218288857|ref|ZP_03493108.1| diguanylate cyclase [Alicyclobacillus acidocaldarius LAA1]
 gi|218240946|gb|EED08123.1| diguanylate cyclase [Alicyclobacillus acidocaldarius LAA1]
          Length = 720

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 86/182 (47%), Gaps = 12/182 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S+L E    Y  +   S  D  +GLLN+  F   L          N  +S++  D+D+FK
Sbjct: 372 SVLLENAKLYQELQDRSFRDEATGLLNYRYFYEELSRRVQASLRENRPVSVLIVDVDFFK 431

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           + ND +GH  GD V+  +   L           R GGEEF A  L +S  EA  +A  +R
Sbjct: 432 RFNDTYGHLAGDVVLREVGRILERHAAPDGVAARYGGEEF-AVLLWASAHEAYEVAEAIR 490

Query: 201 KIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYV-AKKSGRNRVVC 257
           + +    ++        IT+S G+A  C  H E    ++ +AD A+Y  AK+ GRNR   
Sbjct: 491 QDVSKLAVDFEGYHLQGITVSIGMAT-CPDHSESDRDLLVKADSAMYWGAKQRGRNRTAM 549

Query: 258 FS 259
           ++
Sbjct: 550 YA 551


>gi|153002702|ref|YP_001368383.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica OS185]
 gi|151367320|gb|ABS10320.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica OS185]
          Length = 310

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 81/164 (49%), Gaps = 16/164 (9%)

Query: 106 IDCLSGLLNHSAFISSLGS------YNE-KLSIVFFDIDYFKQINDNFGHPVGD----KV 154
           +D L+G+ N   F   L         NE  LS+V  D+D+FK+ ND +GH  GD    +V
Sbjct: 146 LDSLTGVANRRQFEQRLPEIWKHCCRNELALSVVMLDVDFFKRFNDRYGHQEGDQCLRQV 205

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
              +SD L        FV R GGEEF      +    A   A ++   ++   +      
Sbjct: 206 AKAISDSLQRATD---FVARYGGEEFICILPETKLVGAIHTAQNIVNAVQALHLEHLESS 262

Query: 215 SIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
              +TISAG+A    K  ++  T+I  ADQ LY+AK+SGRN+VV
Sbjct: 263 FQEVTISAGVASVLPKSDLTWQTLIETADQQLYLAKESGRNQVV 306


>gi|189425827|ref|YP_001953004.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
 gi|189422086|gb|ACD96484.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
          Length = 860

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 11/162 (6%)

Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N        +A I  +   ++ LS++  DID  K +ND FGH  GD+++  ++
Sbjct: 431 DTLTGLYNRYFLENHLTAEIKRMDRQHQTLSLLLIDIDNLKFVNDTFGHDFGDRLLVQIA 490

Query: 160 DQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           ++L         VGR  G EFA    L    + A  L N +++  + S++ +  G  + I
Sbjct: 491 ERLKQAACPLSIVGRFLGNEFALVPPLAEGREHAVTLVNRIKQ--QMSELFVMDGAEVVI 548

Query: 219 TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           T+S G+       E   T++  A+ A+Y AK+ GRN +V ++
Sbjct: 549 TVSIGVVVFPDDGEDADTLLRNAEAAMYEAKRQGRNTIVWYT 590


>gi|114564421|ref|YP_751935.1| diguanylate cyclase with GAF sensor [Shewanella frigidimarina NCIMB
           400]
 gi|114335714|gb|ABI73096.1| diguanylate cyclase with GAF sensor [Shewanella frigidimarina NCIMB
           400]
          Length = 327

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 15/178 (8%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLS----IVFFDIDYF 139
           G I+ E  +S     Q + +D L+G+ N   F        +Y ++L     ++FFD+DYF
Sbjct: 151 GKIVAEELLSI----QQNTLDALTGISNRRGFELLAHKAIAYGDRLGFETCLIFFDLDYF 206

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND FGH  GD  +   +  L+  F     + R  G+EF      S E     +    
Sbjct: 207 KAINDQFGHEEGDTALKTFAGLLIDSFRESDIIARFAGDEFVVMLSQSDEVSVNSVLQRF 266

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRV 255
           ++ I  +Q N+ SG   H+  S G+A R  ++ +S   Y  + D+A++V K+    R 
Sbjct: 267 QQCI--NQHNLQSGKPYHLRYSKGVAHRQARQSLSLNDYLVKVDKAMFVDKEKHHQRT 322


>gi|332982474|ref|YP_004463915.1| GAF sensor-containing diguanylate cyclase [Mahella australiensis
           50-1 BON]
 gi|332700152|gb|AEE97093.1| diguanylate cyclase with GAF sensor [Mahella australiensis 50-1
           BON]
          Length = 516

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 10/167 (5%)

Query: 97  YNRISQLSRIDCLSGLLN----HSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPV 150
           Y R+ +++ +D L+ + N      AF   L     K  L+I   DID FK+IND +GH  
Sbjct: 337 YERMHKMAILDGLTQVHNRMYFQEAFEEELHKAKGKYPLTIAIGDIDDFKKINDIYGHIA 396

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDKV+  ++  L         + R GGEEF     G    +A  +   LR+ IE   ++ 
Sbjct: 397 GDKVLKAVTSILKDHLRQGDIIARYGGEEFVIILPGVDMNQAYNIVERLRRRIEMLTVS- 455

Query: 211 SSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
             G  I +TIS GIA    C       ++ +AD+ALY AK+ G+N+V
Sbjct: 456 EEGHDISVTISFGIASYPEC-GWTTRELLRQADKALYQAKEHGKNQV 501


>gi|317404719|gb|EFV85107.1| GGDEF domain-containing protein [Achromobacter xylosoxidans C54]
          Length = 409

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 1/128 (0%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           +L+++  DID+FK IND  GH  GD  +   +  +          GRLGGEEF     G 
Sbjct: 251 RLAVLVLDIDHFKSINDRHGHAAGDAALRHFAQVVPKAVRASDRFGRLGGEEFVLLMYGC 310

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
               A + A  +   + +S + +  G  + +T S G+A     +    I+ RAD ALY A
Sbjct: 311 DAAHALVQAQRVCDALRDSPLYL-QGQELRMTTSGGVATLQPGDSADGILARADLALYKA 369

Query: 248 KKSGRNRV 255
           K+ GR+RV
Sbjct: 370 KELGRDRV 377


>gi|312963549|ref|ZP_07778031.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Pseudomonas fluorescens WH6]
 gi|311282355|gb|EFQ60954.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Pseudomonas fluorescens WH6]
          Length = 701

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 87/158 (55%), Gaps = 14/158 (8%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN   F       +S     ++ L +++ D+D FK++ND+ GH  GD+V+ ++S
Sbjct: 278 DPLTGLLNRRGFYQAVENTLSRSERVDQSLVLLYLDLDGFKRVNDSLGHDAGDRVLRWVS 337

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHI 218
           +QL     +   +GR+GG+EF A       + AA ++    K+IE   + +   G  + +
Sbjct: 338 EQLQGCLRSYDIIGRMGGDEFTALLELEFPEHAAKISE---KLIERVSVCHQVDGLDVML 394

Query: 219 TISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            +S GIA    C  + ++ ++  AD A+Y AK++GR +
Sbjct: 395 GVSIGIATFPDCGSD-LNGLLRAADIAMYEAKRAGRQQ 431


>gi|300783795|ref|YP_003764086.1| GGDEF domain-containing diguanylate cyclase [Amycolatopsis
           mediterranei U32]
 gi|299793309|gb|ADJ43684.1| GGDEF domain-containing diguanylate cyclase [Amycolatopsis
           mediterranei U32]
          Length = 407

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 14/163 (8%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL---------SIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           D  +GLLN + +  S    + ++         +++  D+D+FK+IND +GH  GD V+A 
Sbjct: 243 DEKTGLLNTAGWHESATREHARVQRRGATGGFAVLMIDLDHFKRINDTYGHLTGDDVLAA 302

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI- 216
           ++  +         VGR GGEEF     G    +   +A  +R  +    + IS+G    
Sbjct: 303 VAVAISGSVRQGDTVGRFGGEEFVVLLPGIGRADVLAIAERVRVAVGELNVVISTGTGTV 362

Query: 217 ---HITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255
               +++S G+A      P +  ++  AD ALY AK++GRNRV
Sbjct: 363 RVSGLSVSIGVARHPDAGPSLDDVLRAADAALYRAKEAGRNRV 405


>gi|237746855|ref|ZP_04577335.1| GGDEF domain-containing protein [Oxalobacter formigenes HOxBLS]
 gi|229378206|gb|EEO28297.1| GGDEF domain-containing protein [Oxalobacter formigenes HOxBLS]
          Length = 1937

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 58/168 (34%), Positives = 85/168 (50%), Gaps = 11/168 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGD 152
           R+   SR+D ++GLLN  A    + S     +      ++  DID FK +ND +GH  GD
Sbjct: 229 RLLDKSRLDPMTGLLNKIAAEEMIRSAMAAATPDNMGVLLMIDIDSFKNVNDTWGHLAGD 288

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +VI  +  QL   F     +GR+GG+EF         ++AA +    R +    Q N+ S
Sbjct: 289 EVILQIVQQLRRTFREHDIIGRVGGDEF--HVFMRDVKDAAFVDEKARGLCLAVQ-NLFS 345

Query: 213 GPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           G +    +TIS GIA     +  + I  +AD ALY AK SG+NR V +
Sbjct: 346 GENDGRVVTISIGIAITGENKTYNEIYRQADIALYRAKASGKNRFVFY 393



 Score = 39.3 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 104  SRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            +  D L+G+ N   F        E     +  IV  DID FK IND +G   GD ++  +
Sbjct: 1515 AEFDVLTGIYNMQTFYDRASQMMESAPGQQFYIVRLDIDRFKVINDLYGLEEGDCLLKTI 1574

Query: 159  SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
            +  L          GR+ G+ F A    S EQ
Sbjct: 1575 AAMLSEKLKERAVYGRISGDIFCACVDCSREQ 1606


>gi|227329456|ref|ZP_03833480.1| putative regulator [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 515

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 90/181 (49%), Gaps = 14/181 (7%)

Query: 88  SILKELFISYNRISQ-LSRIDCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYF 139
           +I+++   S N   Q L+  D L+GL N   F      +L    EK   ++++  D+D F
Sbjct: 330 TIVRDELTSVNHTLQTLALFDGLTGLANRRQFDIFLQQTLLQAAEKRQCIALIMIDVDAF 389

Query: 140 KQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           K+ ND++GH  GD+ +  + + L  +       V R GGEEFA     + +Q AA LA  
Sbjct: 390 KKYNDHYGHVAGDECLRKIGNLLSSMPRRNEDLVARYGGEEFAIIITETDKQSAAALAQR 449

Query: 199 LRKIIENSQINISSG--PSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRN 253
              ++   +I   +   P   +TISAG+   C   P    S++I  AD ALY AK  G+N
Sbjct: 450 ALDLVREEKIPHETTLFPEKIVTISAGVYVFCADSPPPAASSVIDIADAALYRAKHGGKN 509

Query: 254 R 254
           R
Sbjct: 510 R 510


>gi|254459059|ref|ZP_05072482.1| GGDEF domain/pas/pac sensor domain protein [Campylobacterales
           bacterium GD 1]
 gi|207084330|gb|EDZ61619.1| GGDEF domain/pas/pac sensor domain protein [Campylobacterales
           bacterium GD 1]
          Length = 506

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 105/208 (50%), Gaps = 15/208 (7%)

Query: 65  LVENLSLVIISITISLLLGYIS--GSILKELFISYNRISQLSRIDCLSGLLNHSAF---- 118
           L+  +SL++ +I I+++  Y        K+L  ++ +I  LS  D L+ L N   F    
Sbjct: 299 LIIEMSLIVGAIIIAMIFYYWKYVKKTEKKLNKAHEKIHSLSIKDGLTMLYNRHFFNDNV 358

Query: 119 ---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF--GTPMFVG 173
              I++     +K++ +  D D FK+ NDN+GH  GD V+  +++    +F   T M   
Sbjct: 359 PLQINNAARNKKKITFLMIDADNFKKYNDNYGHVKGDIVLKEIANTCKELFQRSTDM-CY 417

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKE- 231
           R+GGEEF       +++ +  +A  L K IEN  I        + +T+S G+     +E 
Sbjct: 418 RVGGEEFVVVFESENDEYSHSMAEKLCKSIENLDIEHKYNDGYNRVTVSIGMCTSDVQEI 477

Query: 232 -PISTIIYRADQALYVAKKSGRNRVVCF 258
                I   AD+ALY++K++GRNRV  +
Sbjct: 478 TNFDHIYANADKALYLSKENGRNRVTKY 505


>gi|51893986|ref|YP_076677.1| hypothetical protein STH2848 [Symbiobacterium thermophilum IAM
           14863]
 gi|51857675|dbj|BAD41833.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 712

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 10/173 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+GL N  AF + L  Y E       + +++F D+D  K +ND  GH  GD
Sbjct: 264 LKRLASQDALTGLYNRRAFQAELERYLELARHHRVRGALLFMDLDLLKYVNDTLGHQAGD 323

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  +++ +           R GG+EF A  +  + +EA  +A  L + ++  +  +  
Sbjct: 324 QVLVRVAEIIQAHLRPIDIAARHGGDEF-AILMPYTGREAVSVAESLLRAVQQEEFRV-K 381

Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           G S+ +T S G+     H      ++ +AD A+Y AK+SGRN V  F   +  
Sbjct: 382 GRSVTMTASIGVTFFPDHGLTAEALVAQADMAMYRAKESGRNAVAVFDGTDEQ 434


>gi|33598682|ref|NP_886325.1| hypothetical protein BPP4194 [Bordetella parapertussis 12822]
 gi|33574812|emb|CAE39473.1| putative membrane protein [Bordetella parapertussis]
          Length = 380

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 107/226 (47%), Gaps = 28/226 (12%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI-------- 100
            +  + L P   L +   E+ SL I+S+ + L L  ++ +  +     +NR+        
Sbjct: 158 LMICVSLGPCTTLPWFTGEH-SLWIVSVQLPLYLASMTVAAYR-----FNRMLVATMQAE 211

Query: 101 ---SQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
               +L+R D L+GLLN          A  ++    NE  ++++ D+D FK +ND  GH 
Sbjct: 212 RDSDRLARCDALTGLLNRFGLGFALERAVAATRRDGNE-FALLYLDLDGFKSVNDTHGHA 270

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQI 208
            GD+++  ++ +L  +      + R+GG+EF        E  A  L + +  +I E   +
Sbjct: 271 AGDRLLRDVAARLTELAPADAAIARIGGDEFVLLVRNCDEACATALDDRIVARICEPYDL 330

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
                  I  ++   +  R H + ++ I+  AD+ALY+AK +G++R
Sbjct: 331 GTPRPVRIGGSVGIALVPR-HGQEMTAILKAADRALYLAKSAGKSR 375


>gi|329928389|ref|ZP_08282259.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
 gi|328937825|gb|EGG34231.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
          Length = 672

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 90/173 (52%), Gaps = 6/173 (3%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFIS--SLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +F   + + +L+  D ++GL N +         +  ++++I+F D+D FK IND  GH V
Sbjct: 233 MFFDRHVLEKLAYQDTITGLPNRNEMNRFFRTNAETDQITILFLDLDQFKAINDTLGHNV 292

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD ++  +  +L     +   V R+GG+EF      S    A  LA+D+ + I+  ++  
Sbjct: 293 GDLLVQEVGKRLRQFIRSGQQVFRIGGDEFLVILKQSDPNYAQRLADDILQQIK--KVYH 350

Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             G  +++T+S GI+    H    +T++  AD A+Y AK  G+N+  C  D E
Sbjct: 351 IDGNELYVTVSIGISIGSVHSSDRTTLLKNADTAMYKAKGLGKNQ-QCLYDEE 402


>gi|222098820|ref|YP_002532878.1| hypothetical protein BCQ_5189 [Bacillus cereus Q1]
 gi|221242879|gb|ACM15589.1| conserved hypothetical protein [Bacillus cereus Q1]
          Length = 892

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144
           L+    ++  L+  D L+GL N   F   L         S N+ ++++F D+D FK+IND
Sbjct: 453 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 511

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
             GH VGD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  I+
Sbjct: 512 RLGHDVGDLLLIEVAKRLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 571

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            N    I     + IT S GIA    C  + ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 572 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTALMKNADMAMYRAKANGKNRFVFFS 626


>gi|254434207|ref|ZP_05047715.1| response regulator receiver domain protein [Nitrosococcus oceani
            AFC27]
 gi|207090540|gb|EDZ67811.1| response regulator receiver domain protein [Nitrosococcus oceani
            AFC27]
          Length = 1240

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 11/163 (6%)

Query: 100  ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
            I QL+  D L+ L N + F   LG          E+ +++F D+D FK +ND  GH VGD
Sbjct: 1050 IHQLAYHDVLTSLPNRTLFHKQLGELMNRSHLRGEQFAVLFLDLDRFKLVNDTLGHEVGD 1109

Query: 153  KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS 211
             ++   +D++V    +   V RLGG+EF        S + AA +A  +  ++  S++   
Sbjct: 1110 LLLKAAADRIVGCLRSNDMVARLGGDEFTVILEKIESPRVAAEVAAKICSVL--SKVFAF 1167

Query: 212  SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
            SG  ++I+ S GI+      E +ST++  AD A++ AK+ G +
Sbjct: 1168 SGQEMYISTSIGISLYPGDGEDVSTLVKHADTAMFRAKEQGNS 1210


>gi|190573225|ref|YP_001971070.1| putative transmembrane GGDEF signalling regulatory protein
           [Stenotrophomonas maltophilia K279a]
 gi|190011147|emb|CAQ44756.1| putative transmembrane GGDEF signalling regulatory protein
           [Stenotrophomonas maltophilia K279a]
          Length = 589

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 13/165 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           + QL+  D L+GLLN  A    +       +    ++  D+D FK IND  GH  GD+V+
Sbjct: 419 LRQLAGTDELTGLLNRRALDEVVQQRHAGGDASAVVILLDVDRFKAINDGHGHDAGDEVL 478

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQINIS 211
             ++  L         + R GGEEF    A   L    Q    LA  LR  ++   I ++
Sbjct: 479 VRVAQLLRHQLRRSDSIARYGGEEFLVLLADGDLAGGRQ----LAESLRLALQQMDIALA 534

Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
            G  + +T S G+AE         T++  AD A+Y AK  GR+RV
Sbjct: 535 GGTVLRVTASFGVAEGGTDALGWRTLLRAADAAMYRAKAQGRDRV 579


>gi|160892887|ref|ZP_02073676.1| hypothetical protein CLOL250_00418 [Clostridium sp. L2-50]
 gi|156865446|gb|EDO58877.1| hypothetical protein CLOL250_00418 [Clostridium sp. L2-50]
          Length = 382

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 76/168 (45%), Gaps = 14/168 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
           N +++L R D L+GL N  +F  SL           EK  I  FDID+FK +ND +GH  
Sbjct: 217 NLMTEL-RKDPLTGLYNRRSFEESLEKEIQRTEETGEKAYIAIFDIDHFKNVNDTYGHSN 275

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS--QI 208
           GD VI  L   L           R GGEEF          +   +  D+R        Q 
Sbjct: 276 GDVVIKALCKMLKEKSKDYGLAFRYGGEEFVILFNNIELPKVINVVEDVRTEFRCYYFQF 335

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +SG    IT S G+AE    E       RAD +LY AK++GRNR V
Sbjct: 336 MNNSG----ITCSCGVAEYSKGESAKAWFNRADNSLYQAKEAGRNRTV 379


>gi|153939137|ref|YP_001390561.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum F str. Langeland]
 gi|152935033|gb|ABS40531.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum F str. Langeland]
 gi|295318642|gb|ADF99019.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum F str. 230613]
          Length = 419

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 15/180 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           E  I  ++  Q++  D L+ L N ++F+  L             L+I+F D+D FK++ND
Sbjct: 244 ERKIYNDKTKQMAYFDSLTELPNRNSFLKQLEHEIKLSKKKQSLLAIMFLDLDKFKEVND 303

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
           NFGH  GDK++  ++ ++     +   + R GG+EF       + E++   LA D+  + 
Sbjct: 304 NFGHCTGDKLLWQVAKRVKNTISSKDLIARFGGDEFTILIRNIAHEKQVEDLARDIIGVF 363

Query: 204 ENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +   I I  G  ++I  S GI+   +  H      +I +AD+A+Y AKK G N+   + D
Sbjct: 364 KEP-ICI-EGIYVNIKTSIGISFFPKDGH--TSQELIKKADKAMYDAKKRGSNKFQIYKD 419


>gi|148379195|ref|YP_001253736.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum A str. ATCC 3502]
 gi|153932586|ref|YP_001383572.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum A str. ATCC 19397]
 gi|153937787|ref|YP_001387121.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum A str. Hall]
 gi|148288679|emb|CAL82760.1| putative signaling protein [Clostridium botulinum A str. ATCC 3502]
 gi|152928630|gb|ABS34130.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum A str. ATCC 19397]
 gi|152933701|gb|ABS39200.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum A str. Hall]
          Length = 419

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 15/180 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           E  I  ++  Q++  D L+ L N ++F+  L             L+I+F D+D FK++ND
Sbjct: 244 ERKIYNDKTKQMAYFDSLTELPNRNSFLKQLEHEIKLSKKKQSLLAIMFLDLDKFKEVND 303

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
           NFGH  GDK++  ++ ++     +   + R GG+EF       + E++   LA D+ ++ 
Sbjct: 304 NFGHCTGDKLLWQVAKRVKNTISSKDLIARFGGDEFTILIRNIAHEKQVEDLARDIIEVF 363

Query: 204 ENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +   I I  G  ++I  S GI+   +  H      +I +AD+A+Y AKK G N+   + D
Sbjct: 364 KEP-ICI-EGIYVNIKTSIGISFFPKDGH--TSQELIKKADKAMYDAKKIGSNKFQIYKD 419


>gi|77164777|ref|YP_343302.1| hybrid signal transduction histidine kinase and diguanylate
            cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
            19707]
 gi|76883091|gb|ABA57772.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
            19707]
          Length = 1499

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 11/163 (6%)

Query: 100  ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
            I QL+  D L+ L N + F   LG          E+ +++F D+D FK +ND  GH VGD
Sbjct: 1050 IHQLAYHDVLTSLPNRTLFHKQLGELMNRSHLRGEQFAVLFLDLDRFKLVNDTLGHEVGD 1109

Query: 153  KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS 211
             ++   +D++V    +   V RLGG+EF        S + AA +A  +  ++  S++   
Sbjct: 1110 LLLKAAADRIVGCLRSNDMVARLGGDEFTVILEKIESPRVAAEVAAKICSVL--SKVFAF 1167

Query: 212  SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
            SG  ++I+ S GI+      E +ST++  AD A++ AK+ G +
Sbjct: 1168 SGQEMYISTSIGISLYPGDGEDVSTLVKHADTAMFRAKEQGNS 1210


>gi|34452029|gb|AAQ72480.1| sensory box/GGDEF family protein [Bacillus cereus]
          Length = 607

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 13/177 (7%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQIND 144
           L+    ++  L+  D L+GL N   F   L         S N+ ++++F D+D FK+IND
Sbjct: 168 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQTSAND-VAVMFLDLDRFKKIND 226

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
             GH VGD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  I+
Sbjct: 227 RLGHDVGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 286

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            N    I  G  + IT S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 287 -NKPFFI-QGEELSITPSIGIAMYPDYGTDVTELMKNADMAMYRAKANGKNRFVFFS 341


>gi|148259583|ref|YP_001233710.1| diguanylate cyclase [Acidiphilium cryptum JF-5]
 gi|146401264|gb|ABQ29791.1| diguanylate cyclase [Acidiphilium cryptum JF-5]
          Length = 377

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 8/170 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L  +  ++  L+  D L+GL N    +  +     +       L +   D+D+FK+IN
Sbjct: 204 RQLRDALKQVQILATRDELTGLPNRRHALELIERETARACRSGAPLCVAILDLDHFKRIN 263

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGH VGD+V+     +  +V        R GGEEF      S+  +A  +   LR+ +
Sbjct: 264 DTFGHGVGDEVLRTFGREGRLVLRADNIFARWGGEEFILVMPDSTLIDAQTIVRRLREHM 323

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            + +   +S      T SAGIAE    E +     RAD ALY AKK GR+
Sbjct: 324 ASPEC-WASCLRARTTFSAGIAEFLVGETLDETFIRADAALYEAKKLGRD 372


>gi|120556696|ref|YP_961047.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120326545|gb|ABM20860.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 572

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 13/164 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+R+D L+GL N           I       +   +++ DIDYFK IND+ GH  GD
Sbjct: 401 LQRLARVDALTGLKNRRGLDEVMNEEIQRAEREQKGFGLLWLDIDYFKAINDSQGHQAGD 460

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +++  ++  L          GR GG+EF              +A  +R  +E  Q +  +
Sbjct: 461 EILCRVALWLKAAIRPYDHPGRWGGDEFVVLLSPCDAATLEQIACRIRASVE--QESQRT 518

Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
           G S+ I++       C   E +  ++  ADQALY AK++GRNRV
Sbjct: 519 GTSVTISVGGYF---CRPGEDLDALLRNADQALYEAKRNGRNRV 559


>gi|109896772|ref|YP_660027.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109699053|gb|ABG38973.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
          Length = 378

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 93/178 (52%), Gaps = 11/178 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            +L+EL    + + +L+  D L+ L N   F + L         Y   LS++  D+D FK
Sbjct: 195 EMLQELHEKNSLLGELAVQDPLTKLNNRRYFSNKLEVETARSLRYQHPLSLLVVDVDDFK 254

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +INDN GH VGD+V+  +S  +         V R GG+EF    + +  +++  +A+ + 
Sbjct: 255 KINDNDGHLVGDEVLIEISQLIAQQLRAGDVVCRYGGDEFVILLVEACAEQSREIADRIC 314

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + ++ ++   +S     +T+S G A+    +P+   + +AD+ +Y +KK G+N+V  F
Sbjct: 315 QSVDRTKFGRASH---KVTVSIGYAQYV-GQPLGDFMQQADKMMYTSKKRGKNQVAFF 368


>gi|116491495|ref|YP_811039.1| Signal transduction diguanylate cyclase [Oenococcus oeni PSU-1]
 gi|116092220|gb|ABJ57374.1| Signal transduction diguanylate cyclase [Oenococcus oeni PSU-1]
          Length = 371

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 13/162 (8%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N  +F   +   NEK         +  DID+FK  ND++GH  G++V+ + S+
Sbjct: 207 DALTGLRNFFSFNKMIT--NEKNDPSRYWVFLMLDIDHFKSFNDSYGHLEGNRVLKYFSN 264

Query: 161 QLVVVF----GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
           ++   F         + R GGEEF          E+ ++ ND R+ +         G ++
Sbjct: 265 KIKSYFDENISATYRIYRYGGEEFCIVIENFLIDESFLVINDFREELSKDDSVTEKGLAV 324

Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            ++ S G+A  + H   I   I  AD+ALY AKK GR   +C
Sbjct: 325 PVSFSCGVASTQAHDGNIRKTISFADKALYEAKKDGRGENIC 366


>gi|325293377|ref|YP_004279241.1| periplasmic sensor diguanylate cyclase [Agrobacterium sp. H13-3]
 gi|325061230|gb|ADY64921.1| periplasmic sensor diguanylate cyclase [Agrobacterium sp. H13-3]
          Length = 579

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 76/159 (47%), Gaps = 6/159 (3%)

Query: 103 LSRIDCLSGLLNHSAF---ISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGDKVIA 156
           LS  D L+G+ N  A    + ++ S  E+L    ++  DID+FK IND +GH +GD  + 
Sbjct: 410 LSETDALTGVSNRRALEKTVRAILSGEEQLQALGVMIVDIDHFKSINDRYGHAMGDLALQ 469

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             +  L         + R GGEEF       S   A   A+ LR++IE   I+  SG S+
Sbjct: 470 KTATLLRGALRKNDILARYGGEEFVVVLQDVSHATATATADRLRRLIEAQIIDEQSGLSL 529

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +      E         +I  AD  LY AK++GRNRV
Sbjct: 530 TASFGVVWQEARAINSWDELIAIADDRLYEAKRAGRNRV 568


>gi|296135035|ref|YP_003642277.1| diguanylate cyclase/phosphodiesterase [Thiomonas intermedia K12]
 gi|295795157|gb|ADG29947.1| diguanylate cyclase/phosphodiesterase [Thiomonas intermedia K12]
          Length = 799

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 10/166 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVG 151
           Y     ++  D L+GL N  AF+  L +      ++ L++   D+D FK +ND  GH VG
Sbjct: 195 YKTYRTIAHRDDLTGLANRRAFMQKLSATLVKHPHQALAVGMIDLDRFKIVNDRLGHSVG 254

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINI 210
           D+++  +  +L  V      + RLGG+EF     G +S  +   +A+ L K +E  +  +
Sbjct: 255 DQLLVAVGQRLRSVLRQTDVLARLGGDEFVVMFTGYTSLDQLRAVADRLVKSMEQ-EFTV 313

Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNR 254
            S  ++ I +S GI  +   +P+   T++ RAD A+Y +K+ GR +
Sbjct: 314 QSH-ALQIGLSLGIVIQQQAQPVDALTLMRRADLAMYASKEGGRQQ 358


>gi|239908176|ref|YP_002954917.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239798042|dbj|BAH77031.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 596

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 80/174 (45%), Gaps = 12/174 (6%)

Query: 100 ISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           + +LSR D L+GL N        H A +     Y     +   DID+FKQIND  GH  G
Sbjct: 422 LERLSRTDSLTGLPNRRRAEEALHEALVR-FRRYGHGFVVAMADIDHFKQINDAIGHDAG 480

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D  +   +  +         V R GGEEF      ++E  A  L   +   + +  ++ +
Sbjct: 481 DAALRHAARAMAGSLRETDLVARWGGEEFLLFMPDTAEAGARRLLARICDCLASDGLSCA 540

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           +  S  +T + G A     E +  ++ RADQALY  K  GRNRV+   D E+ T
Sbjct: 541 A-LSAPLTATFGAAAIRPGESLDELLRRADQALYRGKAMGRNRVIW--DGEDGT 591


>gi|119866421|ref|YP_936373.1| diguanylate cyclase [Mycobacterium sp. KMS]
 gi|126432958|ref|YP_001068649.1| diguanylate cyclase [Mycobacterium sp. JLS]
 gi|119692510|gb|ABL89583.1| diguanylate cyclase [Mycobacterium sp. KMS]
 gi|126232758|gb|ABN96158.1| diguanylate cyclase [Mycobacterium sp. JLS]
          Length = 361

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 27/175 (15%)

Query: 107 DCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN  A        +SS    +  L++   D+D FKQ+ND+ GH +GD+ +  ++
Sbjct: 198 DPLTGLLNRRAVYQQIEQLLSSHRDRHVHLAVAVVDLDDFKQLNDSHGHAIGDEALVAVA 257

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L    G    VGRLGGEEF  A L     EA  + +  +++   + +++   P   +T
Sbjct: 258 QALRAGAGEGAVVGRLGGEEFVLAEL----LEAGQIDHWAQRMC--TAVDVVPFP---VT 308

Query: 220 ISAGIAERCHKEP--------ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G+A  C   P        I  +I  AD A+Y AK++G N+   F   + + C
Sbjct: 309 ASVGVAAVCLPLPADDDAQTVIHMLIGAADHAMYAAKRAGGNQ---FRHDDRSAC 360


>gi|28871900|ref|NP_794519.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855153|gb|AAO58214.1| GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 366

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 9/159 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           ++  +L+  D L+ + N  AF+ S  S     E   ++  DID FK IND  GH +GD++
Sbjct: 176 SKFRELAETDYLTSIPNRRAFMESFDSLIKGGESGYLIMLDIDNFKLINDRHGHEIGDRI 235

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  L    G+    GR+GGEEF     G  E  A    + + +++E  + N    P
Sbjct: 236 LCSMAACLRATSGSHC-AGRIGGEEFGVLITGGDELTA---CDYILRLLETVRANFD--P 289

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             + + S G+        +S  +  AD+++Y+AK++G++
Sbjct: 290 PYNYSCSVGMVRFSAASTMSEALSMADKSMYIAKRNGKD 328


>gi|229015952|ref|ZP_04172914.1| Sensory box/GGDEF [Bacillus cereus AH1273]
 gi|229022170|ref|ZP_04178721.1| Sensory box/GGDEF [Bacillus cereus AH1272]
 gi|228739171|gb|EEL89616.1| Sensory box/GGDEF [Bacillus cereus AH1272]
 gi|228745345|gb|EEL95385.1| Sensory box/GGDEF [Bacillus cereus AH1273]
          Length = 569

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 90/174 (51%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKLS--IVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++     EK+   +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNKMIAEKIEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 195 HMLGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKTHTQDEMRQLATSVLSCFQAP- 253

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGKDVETLLKNSDLAMYSAKEQGRNAACFFTD 306


>gi|254507818|ref|ZP_05119948.1| ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219549191|gb|EED26186.1| ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 490

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 10/182 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYF 139
           Y    ++ +L      +  ++  D L+ + N  +      +  EK     S++  DID+F
Sbjct: 304 YRVNEVISQLESKQQELEWIAHHDALTKVGNRRSLQQHWQTLVEKQPKHTSLLLIDIDFF 363

Query: 140 KQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           K  ND++GH  GD V+  ++  L      +  FV R GGEEF       S       A  
Sbjct: 364 KPFNDHYGHVEGDNVLQQVATALKEAPTESSKFVARFGGEEFCVVLSNDSPLNNRQEAEW 423

Query: 199 LRKIIENSQINISSGP-SIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNR 254
           LR  +E  +I     P + H+T S G+A+ C  +P   +  +   AD+ALY AK +GRN+
Sbjct: 424 LRAAVETLKIRHHYSPIAAHLTASIGVAD-CGLQPLGDLQDLFLVADRALYEAKDAGRNQ 482

Query: 255 VV 256
           VV
Sbjct: 483 VV 484


>gi|218508127|ref|ZP_03506005.1| putative sensory box/GGDEF family protein [Rhizobium etli Brasil 5]
          Length = 357

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 84/155 (54%), Gaps = 10/155 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           S N++++L+  D L+G LN        S+LGS  + +S++  DID+FKQ+ND  GH  GD
Sbjct: 207 SRNQLTELAHHDPLTGALNRGGLAQHASALGS--QPISLLIMDIDHFKQLNDRHGHAAGD 264

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +++   +     +      + R GG+EF A     S ++A  +A  +R   E + + +  
Sbjct: 265 EILRLFARVSRGIMRPQDLLARQGGDEFLAVLKNLSREDAMAIAERIR--FEFAAV-VMQ 321

Query: 213 GPSIHI--TISAGIAERCHKEPISTIIYRADQALY 245
            P + +  T+S G+A R       ++I++AD+ALY
Sbjct: 322 RPDLAVFPTLSIGVATRISGGDFESLIHKADEALY 356


>gi|119472850|ref|ZP_01614757.1| putative orphan protein; putative conserved domain [Alteromonadales
           bacterium TW-7]
 gi|119444682|gb|EAW25989.1| putative orphan protein; putative conserved domain [Alteromonadales
           bacterium TW-7]
          Length = 985

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 89/174 (51%), Gaps = 25/174 (14%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           S  ++ QL+  D L+GL N + F         ++  G Y    S+ +FD+D FK+IND  
Sbjct: 544 SQRKMEQLAYFDTLTGLANRTFFRMQLRKSLALAERGHY--AFSLFYFDLDEFKRINDTL 601

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIE- 204
           GH  GD+++  ++++L     +   + RLGG+EFA    G  S++ A  +AN +++ +  
Sbjct: 602 GHDAGDQLLIQVANRLKKRLRSEDTIARLGGDEFAVLLSGIESQEHATDVANTIQQTLNM 661

Query: 205 -----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
                N+++ IS+   I +     + E         ++  AD A+Y AK+ GRN
Sbjct: 662 PIMLGNNEVIISASIGITMAPYDSLEE-------DQLLKHADLAMYEAKEKGRN 708


>gi|298507384|gb|ADI86107.1| sensor histidine kinase response receiver diguanylate cyclase
           [Geobacter sulfurreducens KN400]
          Length = 585

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 75/159 (47%), Gaps = 9/159 (5%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F  SL         Y    S+   DID+FKQ ND  GH  GD+V+   +
Sbjct: 419 DPLTGLFNLRQFWLSLDHELKRARRYRRNCSLAMIDIDWFKQYNDCHGHLRGDEVLREAA 478

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHI 218
                   T     R GGEEF      ++ + A + A  LR+ +E     +  + P   +
Sbjct: 479 AVFRGCIRTSDIAARYGGEEFVVIMPETTRELALLAAEKLRRAVEEHLFPLRETQPGGAL 538

Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T+S GIA      E    ++  AD+ALY AK+ GRNRVV
Sbjct: 539 TVSIGIATFPDDAEDGRELVEAADRALYRAKEGGRNRVV 577


>gi|284042169|ref|YP_003392509.1| diguanylate cyclase [Conexibacter woesei DSM 14684]
 gi|283946390|gb|ADB49134.1| diguanylate cyclase [Conexibacter woesei DSM 14684]
          Length = 650

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 92/188 (48%), Gaps = 15/188 (7%)

Query: 87  GSILKELFIS------YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVF 133
           GS+  +  IS      ++++ + +  D L+GL NH  F       +++   + + L ++ 
Sbjct: 453 GSLAAQTGISLENVELHDQVKRQAVTDELTGLFNHRRFQEVITIEVAAAQRFGQPLGLLM 512

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID FKQ+ND +GH  GD V+  ++  L+          R GGEE A A   +    A 
Sbjct: 513 VDIDNFKQVNDTYGHQQGDVVLREVARILLDSSREIDEPARYGGEEMAVALPQTDLDGAF 572

Query: 194 ILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            +A  +R  +E   +    G   +H+T+S G+A          ++  AD ALY AK++G+
Sbjct: 573 TIAERVRTAVEELAVPRLDGDGLLHVTVSCGVAASASAGK-DQLVAAADVALYTAKRTGK 631

Query: 253 NRVVCFSD 260
           N+ V  +D
Sbjct: 632 NKTVRATD 639


>gi|291613781|ref|YP_003523938.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1]
 gi|291583893|gb|ADE11551.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1]
          Length = 456

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 61/125 (48%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +I+  DID+FK IND  GH  GD V+   SD +        F+ R GGEE     +    
Sbjct: 327 AILLLDIDHFKNINDTHGHDSGDMVLQQASDLVTSSVRVGDFIFRYGGEELLVVLVEIGR 386

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            +A  +A  +R+      + +  G  + +T+S G+A          I+  AD ALY AK 
Sbjct: 387 DQALQVAETIRERFAAEPMRVGDGKVMQVTVSIGVAAYNGHPDYERIVKDADDALYRAKN 446

Query: 250 SGRNR 254
           SGRNR
Sbjct: 447 SGRNR 451


>gi|126738794|ref|ZP_01754490.1| diguanylate cyclase, putative/response regulator [Roseobacter sp.
           SK209-2-6]
 gi|126719975|gb|EBA16682.1| diguanylate cyclase, putative/response regulator [Roseobacter sp.
           SK209-2-6]
          Length = 462

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 5/132 (3%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  D+D+FK+IND++GHPVGD V+   + +L         + R+GGEEF     G+ E
Sbjct: 322 ALMLADLDHFKRINDSYGHPVGDAVLIEAAKRLQAELRPVDLLARVGGEEFMIVLPGADE 381

Query: 190 QEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEP---ISTIIYRADQAL 244
            EA + A DL   I +   +I      + +TIS G +  R + +    ++ +I  AD+AL
Sbjct: 382 IEAGVAAVDLCNAINSRPFHIDGIREPVEVTISIGAVIGRGNDDATQSVNDLISAADRAL 441

Query: 245 YVAKKSGRNRVV 256
           Y AK +GRN+V 
Sbjct: 442 YDAKNAGRNQVT 453


>gi|331019636|gb|EGH99692.1| GGDEF domain protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 398

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 23/216 (10%)

Query: 62  EYILVENLSLVIISITISLLLGYI---SGSILKELFISYNRISQL-----SRIDCLSGLL 113
           ++++ +  +L+ +S  + LL+        S L  LF    R+ Q+     +R D L+ L 
Sbjct: 184 DFVIWQANALLFVSTVMLLLMASYFLERASRLSYLFALRGRLLQVQLLEFARTDALTRLF 243

Query: 114 NHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N       L S  E+       ++I+  DID+FK  NDN+GHP GD  +  L   +    
Sbjct: 244 NRRYQDEVLTSVWERARKKQANVAIILLDIDHFKSYNDNYGHPQGDVCLKLLCKAIQQSA 303

Query: 167 GTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGI 224
                V  R GGEE     + +   +A  +A  L+  +   ++ + + G   H+TIS G+
Sbjct: 304 NDGGAVAFRFGGEE-VLVLMNADADQATKMAETLKATVAALKLPHPALGEDAHVTISLGV 362

Query: 225 AERCHKEPI---STIIYRADQALYVAKKSGRNRVVC 257
           A      P+    T+I  AD ALY AK +GRN V C
Sbjct: 363 AS--GIAPLITYDTLISAADNALYAAKHAGRNCVFC 396


>gi|310780622|ref|YP_003968953.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
 gi|309749945|gb|ADO84605.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
          Length = 288

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 11/163 (6%)

Query: 100 ISQLSRIDCLSGL-------LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           IS  S  D L+GL       LN    I    ++++++SI F D+D FK IND +GH  GD
Sbjct: 126 ISDKSMHDHLTGLYNRHYLELNLDTLIKKSLAFDKEISIAFIDLDNFKNINDKYGHKRGD 185

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+ F+   +           R GG+EF      +S ++A  +   +   ++ +     +
Sbjct: 186 EVLEFMGKLIKSSIRETDNAIRYGGDEFIILYQDTSTEKALEITERINTKMKKNDFLYEN 245

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                I+IS+GI      E    +I RAD+A+Y +KKSG++++
Sbjct: 246 ----KISISSGIVSYQKNENWKELINRADKAMYDSKKSGKDKI 284


>gi|291527043|emb|CBK92629.1| diguanylate cyclase (GGDEF) domain [Eubacterium rectale M104/1]
          Length = 346

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 116/233 (49%), Gaps = 16/233 (6%)

Query: 36  SIFIATVIFIANIFLFYIG--LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
           +I +  V  IA I L+ +    TP Y L+ ++++++S+ +IS  + L++  +   +L  +
Sbjct: 119 AILLCCVYAIALIILYMLDGFYTPLYKLDSVVIKSISIAMISGVVFLIITCMM-CLLHFM 177

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGH 148
                 + + ++ D L+ L N    ++ L +  E     +  +   DID FK+IND+FGH
Sbjct: 178 SSEEGAMEKQAQFDALTELPNRFYMMAKLKNLFEAEKQGEYFLAMIDIDDFKKINDSFGH 237

Query: 149 PVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
            VGD  +  L+  +V    G  +   R GGEEF         +      ++LR  I +  
Sbjct: 238 NVGDDALKMLARTIVNKARGVELSYCRWGGEEFLLLGKCVDGEVPKNFLDELRVEINSKS 297

Query: 208 INISSGPS-IHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              S G   + +TI AG  +  + +KE I+ +    D+ LYV K +G+N+VVC
Sbjct: 298 FWTSKGSGRMTVTIGAGKYKVGQDYKEWINFV----DKQLYVGKCTGKNKVVC 346


>gi|291279140|ref|YP_003495975.1| signal transduction response regulator [Deferribacter desulfuricans
           SSM1]
 gi|290753842|dbj|BAI80219.1| signal transduction response regulator [Deferribacter desulfuricans
           SSM1]
          Length = 299

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 5/165 (3%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVG 151
           +Y R+   +  D L+G+LN  + +S L S     N+++ I+  DID FK+IND +GH VG
Sbjct: 131 AYARLYNDAIHDFLTGVLNRRSIMSELESLSNNPNDEIGIIIIDIDNFKKINDTYGHLVG 190

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  +S+ +        +VGR GGEEF       +  E+  +A  +R  I N   +I 
Sbjct: 191 DEVLKEISNIISKSLRKDDYVGRYGGEEFLVILPKLNINESFTVAERIRNSIANHNFHIG 250

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                 IT+S G++     + I   +  AD+ALYVAK++G+N+ V
Sbjct: 251 D-IDFKITVSLGVSSLKKFKNIKDALNEADKALYVAKRTGKNKTV 294


>gi|284991925|ref|YP_003410479.1| diguanylate cyclase [Geodermatophilus obscurus DSM 43160]
 gi|284065170|gb|ADB76108.1| diguanylate cyclase [Geodermatophilus obscurus DSM 43160]
          Length = 370

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 80/169 (47%), Gaps = 18/169 (10%)

Query: 99  RISQ-LSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           R S+ L+  D L+G LN  AF+  L       +    +   D+D FK +ND  GH  GD 
Sbjct: 211 RTSEVLAATDPLTGCLNRRAFLDRLDRAAADADGGWVVCLVDLDGFKGVNDGSGHAAGDA 270

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAA---AALGSSEQEAAILANDLRKIIENSQINI 210
           V+  ++  L  V      V RLGG+EFA    AA G  E  AA L + +  +   S +  
Sbjct: 271 VLRAVTAALSGVVRETDTVARLGGDEFAVLAEAAPGEEEPLAARLRDAVAAVGAGSGVTA 330

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           S G ++   +  G   R        ++ RADQA+Y +K +G NRV   +
Sbjct: 331 SVGATV---VRPGDEGR-------EVLSRADQAMYRSKGAGGNRVTALA 369


>gi|89901272|ref|YP_523743.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
 gi|89346009|gb|ABD70212.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
          Length = 422

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 11/176 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           EL  + +++  LS  D L+GL N   F        ++       L+++  D+D+FK  ND
Sbjct: 225 ELQAANSQLETLSTTDGLTGLANRRRFDKYWAEEWQRALRQATPLAVIMMDVDHFKTYND 284

Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           ++GH  GD+ +  + + L   V        R GGEEF     G+S  +A   A  +   I
Sbjct: 285 HYGHQQGDECLRRVGEVLRATVRRAGELAARYGGEEFVVVMPGASLAQAQETAESILAAI 344

Query: 204 ENSQINISSGPSIH-ITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVV 256
              Q+  +S P    +TIS G+A          + ++  AD ALY AK  GRNRVV
Sbjct: 345 RAEQMPHASSPVASVVTISLGVAAGTPGPAGDRARMLNEADVALYDAKHQGRNRVV 400


>gi|56477012|ref|YP_158601.1| hypothetical protein ebA2804 [Aromatoleum aromaticum EbN1]
 gi|56313055|emb|CAI07700.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 237

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 11/176 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFK 140
            +L+EL     R+  LS  D L+GL N    +  L   + +         I+  DID+FK
Sbjct: 63  GMLREL---NQRLEWLSHRDALTGLPNRRHALMRLREEHVRAQRGGRSFVIMIIDIDHFK 119

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH +GD+ +  ++ +L           R GGEEF      +    A   A  LR
Sbjct: 120 DINDTWGHELGDQALTAVAARLAASVREYDVCARWGGEEFLVMLPDTEPCTAGDNAERLR 179

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             + N  + I     + IT+S G+      E ++  + R D ALY AK  GR+R+ 
Sbjct: 180 ACVGNDPVIIGE-RQLRITVSLGVGSCRLGEELAEFMKRVDDALYFAKHEGRDRIA 234


>gi|84392305|ref|ZP_00991732.1| GGDEF domain [Vibrio splendidus 12B01]
 gi|84376425|gb|EAP93305.1| GGDEF domain [Vibrio splendidus 12B01]
          Length = 657

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 18/174 (10%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D L+GL N +         ++S    N+  ++++ D+D FK +NDN+GH  G
Sbjct: 489 RLEHLAHHDALTGLANRAQLYKVMDDVVTSSHYSNQHFAVIYLDLDGFKYVNDNYGHDAG 548

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  +S +L+        V RL G+EF      +++   A LA  L ++I   Q    
Sbjct: 549 DEILKEVSSRLLSQVRAGDLVARLSGDEFVLIIKQTNKVLLAKLAERLLELI--GQEVTH 606

Query: 212 SGPSIHITISAGI-----AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              S+H+  S GI     +ER     I  I+  AD+A+Y AK+ G+ + V   D
Sbjct: 607 KQRSLHVGASLGIHLVDGSER----DIDVILKVADEAMYQAKRKGKGQFVFSRD 656


>gi|319787671|ref|YP_004147146.1| response regulator receiver modulated diguanylate cyclase
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317466183|gb|ADV27915.1| response regulator receiver modulated diguanylate cyclase
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 429

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 8/164 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+GL N   F       +  +    + L++V  D+D+FK +ND +GH  GD
Sbjct: 264 LQDLATRDFLTGLPNRRHFLDQAERLVPRMRDVRQPLAMVMLDLDHFKHVNDTWGHETGD 323

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  ++  +         + R GGEEF     G   +E       LR  +E+ ++ +  
Sbjct: 324 RALRAVASTISAHARPQDHIARFGGEEFCMLLPGLEGRELHEHLEKLRLRVEDLRVPVDQ 383

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  + ++IS G       + + +++  AD+ LY+AK  GRN+V+
Sbjct: 384 G-ELRLSISIGACNARVGDTLHSLLAEADRRLYLAKAGGRNQVI 426


>gi|163847215|ref|YP_001635259.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|163668504|gb|ABY34870.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
          Length = 263

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y  +  L+  D L+G+ N  AF  +L         Y   L+++  DID FK  ND +GH 
Sbjct: 85  YAEVEALAVTDSLTGIANRRAFDRALEREFVRARHYGYPLALIMVDIDSFKHYNDTYGHL 144

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  ++  L        FV R GGEEFA     + +Q A  +A  +R+  E S   
Sbjct: 145 AGDDRLRAVAQLLAQSVREVDFVARYGGEEFAIILTNTDKQTAIAVAEQIRRKAEMSCPE 204

Query: 210 ISSG-PSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +G P    T+S G+A      + P++ ++  AD A   AK++G+NRV
Sbjct: 205 PLNGLPVSGYTLSLGVAAFPDDAQTPVA-LLLAADNAELAAKRAGKNRV 252


>gi|254239213|ref|ZP_04932536.1| hypothetical protein PACG_05404 [Pseudomonas aeruginosa C3719]
 gi|126171144|gb|EAZ56655.1| hypothetical protein PACG_05404 [Pseudomonas aeruginosa C3719]
          Length = 823

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 17/177 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVG 151
           R+S  +  D L+GL N   F   L    E+L       +++F D+D FK +ND  GH  G
Sbjct: 373 RLSWQATHDALTGLTNRREFEYRLQIALERLERNSGRHALMFLDLDQFKLVNDTCGHAAG 432

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  +   L         + RLGG+EF         ++A  +A+ LRK I++     S
Sbjct: 433 DELLRQVCTLLQQGLREGDTLARLGGDEFGILLENCPAEKAVEIADHLRKTIQDLHFTWS 492

Query: 212 SGPSIHITISAGIAERCHKEP-ISTI---IYRADQALYVAKKSGRNRVVCF--SDIE 262
             P  + T+S G+    H  P IST+   +  AD A Y+AK+ GRNRV  F   D+E
Sbjct: 493 GQP-FNCTVSVGLV---HLLPGISTLEEALRSADMACYMAKEKGRNRVQVFHQDDVE 545


>gi|107100318|ref|ZP_01364236.1| hypothetical protein PaerPA_01001343 [Pseudomonas aeruginosa PACS2]
 gi|218893172|ref|YP_002442041.1| hypothetical protein PLES_44571 [Pseudomonas aeruginosa LESB58]
 gi|218773400|emb|CAW29212.1| hypothetical protein PLES_44571 [Pseudomonas aeruginosa LESB58]
          Length = 818

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 17/177 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVG 151
           R+S  +  D L+GL N   F   L    E+L       +++F D+D FK +ND  GH  G
Sbjct: 369 RLSWQATHDALTGLTNRREFEYRLQIALERLERNSGRHALMFLDLDQFKLVNDTCGHAAG 428

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  +   L         + RLGG+EF         ++A  +A+ LRK I++     S
Sbjct: 429 DELLRQVCTLLQQGLREGDTLARLGGDEFGILLENCPAEKAVEIADHLRKTIQDLHFTWS 488

Query: 212 SGPSIHITISAGIAERCHKEP-ISTI---IYRADQALYVAKKSGRNRVVCF--SDIE 262
             P  + T+S G+    H  P IST+   +  AD A Y+AK+ GRNRV  F   D+E
Sbjct: 489 GQP-FNCTVSVGLV---HLLPGISTLEEALRSADMACYMAKEKGRNRVQVFHQDDVE 541


>gi|15596058|ref|NP_249552.1| hypothetical protein PA0861 [Pseudomonas aeruginosa PAO1]
 gi|9946759|gb|AAG04250.1|AE004521_1 hypothetical protein PA0861 [Pseudomonas aeruginosa PAO1]
          Length = 818

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 17/177 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVG 151
           R+S  +  D L+GL N   F   L    E+L       +++F D+D FK +ND  GH  G
Sbjct: 369 RLSWQATHDALTGLTNRREFEYRLQIALERLERNSGRHALMFLDLDQFKLVNDTCGHAAG 428

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  +   L         + RLGG+EF         ++A  +A+ LRK I++     S
Sbjct: 429 DELLRQVCTLLQQGLREGDTLARLGGDEFGILLENCPAEKAVEIADHLRKTIQDLHFTWS 488

Query: 212 SGPSIHITISAGIAERCHKEP-ISTI---IYRADQALYVAKKSGRNRVVCF--SDIE 262
             P  + T+S G+    H  P IST+   +  AD A Y+AK+ GRNRV  F   D+E
Sbjct: 489 GQP-FNCTVSVGLV---HLLPGISTLEEALRSADMACYMAKEKGRNRVQVFHQDDVE 541


>gi|88859993|ref|ZP_01134632.1| putative GAF sensor protein [Pseudoalteromonas tunicata D2]
 gi|88817987|gb|EAR27803.1| putative GAF sensor protein [Pseudoalteromonas tunicata D2]
          Length = 692

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 14/175 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           +S+++RID L+G+ N       +     +       +++V  D+D FKQIND+ GH  GD
Sbjct: 266 LSEVARIDPLTGIANRLVLDDRIAQALARSQRTGHLMAMVLLDLDEFKQINDSLGHQAGD 325

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINI 210
           K++  L+++L  V      V RLGG+EF      + S EQ   +L    + II+  +  +
Sbjct: 326 KLLKILANRLTKVVRKTDTVARLGGDEFCIIFEKIDSQEQCRDMLK---KLIIQVEKSTL 382

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSDIENN 264
            SG +I+   S G A  C  +     +Y RAD A+Y AKK  R  +  +   E  
Sbjct: 383 LSGHAINPKASIG-ACICRGDIDKQELYKRADAAMYQAKKMTRGSIKIYQHNEEQ 436


>gi|254245147|ref|ZP_04938469.1| hypothetical protein PA2G_06035 [Pseudomonas aeruginosa 2192]
 gi|126198525|gb|EAZ62588.1| hypothetical protein PA2G_06035 [Pseudomonas aeruginosa 2192]
          Length = 818

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 17/177 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVG 151
           R+S  +  D L+GL N   F   L    E+L       +++F D+D FK +ND  GH  G
Sbjct: 369 RLSWQATHDALTGLTNRREFEYRLQIALERLERNSGRHALMFLDLDQFKLVNDTCGHAAG 428

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  +   L         + RLGG+EF         ++A  +A+ LRK I++     S
Sbjct: 429 DELLRQVCTLLQQGLREGDTLARLGGDEFGILLENCPAEKAVEIADHLRKTIQDLHFTWS 488

Query: 212 SGPSIHITISAGIAERCHKEP-ISTI---IYRADQALYVAKKSGRNRVVCF--SDIE 262
             P  + T+S G+    H  P IST+   +  AD A Y+AK+ GRNRV  F   D+E
Sbjct: 489 GQP-FNCTVSVGLV---HLLPGISTLEEALRSADMACYMAKEKGRNRVQVFHQDDVE 541


>gi|319936951|ref|ZP_08011361.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Coprobacillus sp. 29_1]
 gi|319807887|gb|EFW04466.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Coprobacillus sp. 29_1]
          Length = 680

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 82/169 (48%), Gaps = 19/169 (11%)

Query: 96  SYNRISQLSRI---DCLSGLLNHSA------FISSLGSYNEKLSIVFFDIDYFKQINDNF 146
            Y ++++L RI   D L+ L NH         I S   Y E  +++  D+DYFK  ND F
Sbjct: 515 EYTKMNKLKRIAAQDSLTKLSNHKTARQQIEMIMSKHPY-EHYAMILIDLDYFKNANDFF 573

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+V+ + S +L+   G    + R+GG+EF        + E  +     R+I +  
Sbjct: 574 GHMFGDEVLRYFSKKLLDCIGEKSIISRVGGDEFMVFIKYEGDVEKRV-----REIHDCV 628

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNR 254
                  P   I++S GIA           IY+ ADQALY AKKSGR +
Sbjct: 629 SCRYKEYP---ISLSMGIALYPENGDDYEDIYKHADQALYSAKKSGRKQ 674


>gi|288549810|ref|ZP_05968278.2| cellulose synthesis regulatory protein [Enterobacter cancerogenus
           ATCC 35316]
 gi|288317511|gb|EFC56449.1| cellulose synthesis regulatory protein [Enterobacter cancerogenus
           ATCC 35316]
          Length = 535

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 23/204 (11%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRI----------DCLSGLLNHSAFISSLG 123
           ISI ++LL    S  +L    +    +S +  +          D L+ L N  A      
Sbjct: 327 ISIVLALLWALFSAMLLISWLLIRRMVSNMYTLQHSLQWQAWHDPLTRLHNRGALFERAN 386

Query: 124 -------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                  + +   S++  D+D+FK IND FGH  GDKV++  +  +          GR+G
Sbjct: 387 RLARECQAQSRPFSVIQIDLDHFKNINDRFGHQAGDKVLSHAAGLIAGGLRPCDVAGRVG 446

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---- 232
           GEEF     G +  +AA +A  +R  I++ +I +    ++ I+ S G++  C  E     
Sbjct: 447 GEEFCVVLPGLALPQAAAIAERIRSRIDSKEILLKKSTTLRISASFGVS--CAHEKGNYN 504

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
              +   AD  LY AK+ GRN+VV
Sbjct: 505 FDQLQSIADLRLYQAKQRGRNQVV 528


>gi|28868223|ref|NP_790842.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213967310|ref|ZP_03395459.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
 gi|28851460|gb|AAO54537.1| GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213928152|gb|EEB61698.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
          Length = 413

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 23/216 (10%)

Query: 62  EYILVENLSLVIISITISLLLGYI---SGSILKELFISYNRISQL-----SRIDCLSGLL 113
           ++++ +  +L+ +S  + LL+        S L  LF    R+ Q+     +R D L+ L 
Sbjct: 199 DFVIWQANALLFVSTVMLLLMASYFLERASRLSYLFALRGRLLQVQLLEFARTDALTRLF 258

Query: 114 NHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N       L S  E+       ++I+  DID+FK  NDN+GHP GD  +  L   +    
Sbjct: 259 NRRYQDEVLTSVWERARKKQANVAIILLDIDHFKSYNDNYGHPQGDVCLKLLCKAIQQSA 318

Query: 167 GTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGI 224
                V  R GGEE     + +   +A  +A  L+  +   ++ + + G   H+TIS G+
Sbjct: 319 NDGGAVAFRFGGEEV-LVLMNADADQATKMAETLKATVAALKLPHPALGEDAHVTISLGV 377

Query: 225 AERCHKEPI---STIIYRADQALYVAKKSGRNRVVC 257
           A      P+    T+I  AD ALY AK +GRN V C
Sbjct: 378 AS--GIAPLITYDTLISAADNALYAAKHAGRNCVFC 411


>gi|332993642|gb|AEF03697.1| TPR repeat- and GGDEF domain-containing signaling protein
           [Alteromonas sp. SN2]
          Length = 648

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 91/187 (48%), Gaps = 4/187 (2%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKLSI 131
           +S TI+ +L  ++  ++        +  +++  D L+  LN    +++  S    + ++I
Sbjct: 460 LSATIAFILVLVASLLVYRQSRQRKKYHRMASTDHLANCLNRRGILATANSKLAQQNITI 519

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+DYFK+IND +GH VGD V+   ++            GR GGEE+      S E+ 
Sbjct: 520 AIVDLDYFKRINDEYGHDVGDLVLIAFANAAKETLSKHDDFGRYGGEEWLFILHSSDEKV 579

Query: 192 AAILANDLRKIIENSQINISS-GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKK 249
             ++   L    +    NI +    + +T S G++        + T I RAD ALY AK+
Sbjct: 580 VRLMFEKLAATYQKYCNNIDALKGDLSMTFSVGVSLGNKSNRTLDTSIKRADDALYQAKE 639

Query: 250 SGRNRVV 256
           +GRN+VV
Sbjct: 640 NGRNQVV 646


>gi|332534917|ref|ZP_08410737.1| hypothetical GGDEF family protein [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035652|gb|EGI72142.1| hypothetical GGDEF family protein [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 328

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 88/192 (45%), Gaps = 22/192 (11%)

Query: 92  ELFISYNRISQLSR----------IDCLSGLLNHSAFISSLGS----YNEKLS------I 131
           +L ++YN I  L             D L+G  N   F S +      Y+EK        +
Sbjct: 137 KLAVAYNEIKDLKEALNISKEAADTDTLTGFYNRGKFDSDIVKFCFEYSEKAQEDSLAVL 196

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           + FDID+FK+ ND+FGH  GD+V+  ++ ++         + R GGEEF   A   +  +
Sbjct: 197 IMFDIDHFKRFNDDFGHQKGDEVLRLVAKKVRENTTETANIYRYGGEEFCITAYFDTIND 256

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISA--GIAERCHKEPISTIIYRADQALYVAKK 249
               A+ +R  I    I      +    ISA  G+A        S ++ RAD+ALY+AK 
Sbjct: 257 IIAFADCIRLAIAKLAIRKKHDVTAKRAISASFGLAILRPFTNSSVLVERADRALYIAKT 316

Query: 250 SGRNRVVCFSDI 261
            GRNR+    DI
Sbjct: 317 HGRNRIEIAPDI 328


>gi|302386653|ref|YP_003822475.1| diguanylate cyclase [Clostridium saccharolyticum WM1]
 gi|302197281|gb|ADL04852.1| diguanylate cyclase [Clostridium saccharolyticum WM1]
          Length = 547

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 13/167 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           + +LS+ D L+GLLN +  I    ++L +      ++  DID FKQ+NDN+GH  GDK +
Sbjct: 379 LQELSKQDSLTGLLNRATAIHAIRNTLKNSQGHHILIMLDIDRFKQLNDNYGHQFGDKAL 438

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINISSG 213
              + +L          GRLGG+EF          +    + DL   +EN  S I  +  
Sbjct: 439 HRAASRLKSALRRDDIFGRLGGDEFIILL------KDVAYSMDLYARLENLCSLIGSALE 492

Query: 214 PSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFS 259
           P  HI+ S G A       +   +Y +AD ALY AKK GR++   + 
Sbjct: 493 PEAHISGSLGTAAYPEDGTVFEELYEKADIALYHAKKHGRSQYAVYE 539


>gi|294665478|ref|ZP_06730762.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604732|gb|EFF48099.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 790

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 9/165 (5%)

Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D ++GL+N       L        S     ++ F D+D+FK +ND FGH VGD+ + 
Sbjct: 357 ARHDAMTGLINRHEIERRLLRLIELPQSPQMCHALCFVDLDHFKLVNDTFGHAVGDRFLC 416

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             +D + +   +  ++GRLGG+EFA     +   +A I+   +   +     +   G  +
Sbjct: 417 HFADVITMQLRSGDWLGRLGGDEFAILLANTDLAQAQIVLERMHGAL-GQPWSHQGGRPL 475

Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + S G+ E R     ++ ++  AD A + AK+ GRNR+ CF++
Sbjct: 476 TPSCSFGVVEIRQGVSDLNALMTAADLACHAAKEEGRNRIRCFNE 520


>gi|294625116|ref|ZP_06703761.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600580|gb|EFF44672.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 788

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 9/165 (5%)

Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D ++GL+N       L        S     ++ F D+D+FK +ND FGH VGD+ + 
Sbjct: 357 ARHDAMTGLINRHEIERRLLRLIELPQSPQMCHALCFVDLDHFKLVNDTFGHAVGDRFLC 416

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             +D + +   +  ++GRLGG+EFA     +   +A I+   +   +     +   G  +
Sbjct: 417 HFADVITMQLRSGDWLGRLGGDEFAILLANTDLAQAQIVLERMHGAL-GQPWSHQGGRPL 475

Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + S G+ E R     ++ ++  AD A + AK+ GRNR+ CF++
Sbjct: 476 TPSCSFGVVEIRQGVSDLNALMTAADLACHAAKEEGRNRIRCFNE 520


>gi|258406476|ref|YP_003199218.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692]
 gi|257798703|gb|ACV69640.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692]
          Length = 252

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 95/184 (51%), Gaps = 21/184 (11%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           ++ +EL    + +S++S ID L+G+ N   F  ++ +        N+ L++VF D+DYFK
Sbjct: 65  TLNEELNAHKDVLSEMSYIDGLTGIANRRRFNETVEAEWQRGLRNNQALALVFLDLDYFK 124

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAA-ILAND 198
           Q NDN+GH +GD  +  ++  L          V R GGEEF    L  ++QE A  +   
Sbjct: 125 QYNDNYGHNLGDTCLIDVAKALQQSAKRCNDLVARYGGEEF-VILLPDTDQEGAFAVGQK 183

Query: 199 LRKIIENSQINISSGPSIH-ITISAGI------AERCHKEPISTIIYRADQALYVAKKSG 251
           +   I N +I  +  P    +T S G+      AER  ++ I T    AD  LY AK++G
Sbjct: 184 VLDNIRNLEIPHAFSPIAQVVTASVGVAVTIPGAERTPQDLIQT----ADAQLYAAKEAG 239

Query: 252 RNRV 255
           RN++
Sbjct: 240 RNQM 243


>gi|153875139|ref|ZP_02003066.1| two-component response regulator [Beggiatoa sp. PS]
 gi|152068397|gb|EDN66934.1| two-component response regulator [Beggiatoa sp. PS]
          Length = 355

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 98/198 (49%), Gaps = 16/198 (8%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL---NHSAFIS-------SLGSYNE 127
           ++L L ++   + +      N   +L R++ L GL    N   F          L    +
Sbjct: 158 VNLQLNHLKKQLEQRNVAFENANKELKRLNALDGLTLIANRCRFDEYLTQKWYELEQQPQ 217

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALG 186
            LS++F D+DYFK  ND +GH  GD+ +  ++  +  V  G+   V R GGEEF    L 
Sbjct: 218 PLSLIFADVDYFKHYNDQYGHLAGDECLRKIAQSINKVAKGSSDLVARYGGEEF-VVLLP 276

Query: 187 SSEQEAAI-LANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQ 242
           + + E  I +A +++  I+N +I +  S  S ++++S GIA       +S   +I  AD+
Sbjct: 277 NRQAEGTIQIAENIQIAIQNLKIVHAKSSISDYVSMSMGIASLIPNPNLSPEKLIKMADE 336

Query: 243 ALYVAKKSGRNRVVCFSD 260
           ALY AK  GRN +V   +
Sbjct: 337 ALYQAKHQGRNCIVVMGN 354


>gi|313201284|ref|YP_004039942.1| PAS/PAC sensor-containing diguanylate cyclase [Methylovorus sp.
           MP688]
 gi|312440600|gb|ADQ84706.1| diguanylate cyclase with PAS/PAC sensor [Methylovorus sp. MP688]
          Length = 498

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 17/175 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++L+  D L+GL N   F   L            KL+++F D+D FK++ND+FGH +GD
Sbjct: 325 LNKLAYYDALTGLPNRLLFEDRLHQGMFACKRQGSKLAVLFVDLDKFKEVNDSFGHHIGD 384

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEF-----AAAALGSSEQEAAILANDLRKIIENSQ 207
            ++  ++ +L         V RLGG+EF     + + +  SE+    L   LR       
Sbjct: 385 LLLKEIARRLRSQLREEDTVSRLGGDEFVILLNSISCVEDSEKVVRNLLAALRAPFTTES 444

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           + +    SI I I        H +  +TI+ +ADQA+Y+AK+  +     FS+I+
Sbjct: 445 VTLYQEASIGICIYPD-----HAQDEATIVNKADQAMYIAKRDSQRHYAFFSEID 494


>gi|300696950|ref|YP_003747611.1| modulator of Rnase II stability, signal transduction protein
           eal-ggdef domains (gmr) [Ralstonia solanacearum
           CFBP2957]
 gi|299073674|emb|CBJ53194.1| putative modulator of Rnase II stability, signal transduction
           protein eal-ggdef domains (gmr) [Ralstonia solanacearum
           CFBP2957]
          Length = 589

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 21/183 (11%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFIS------SLGSYN-EKLSIVFFDIDYFKQINDNFGH 148
           +  RI  L+  D L+GLLN  A         +L   N  ++S++F D+D FK IND  GH
Sbjct: 142 AQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRNGTRVSVMFLDLDRFKNINDTLGH 201

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+++  ++ +L         V RLGG+EF            ++     R++ E    
Sbjct: 202 QFGDQLLREVAARLQACAREADTVARLGGDEFVVML-------ESLDGMGTRRVAERILA 254

Query: 209 NISS-----GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF-SDI 261
            I +     G  + + +S GIA   H  +  +T++ +AD A+Y+AK+ GRN    F SD+
Sbjct: 255 AIGAPFHIEGQELFVGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNFQTFTSDL 314

Query: 262 ENN 264
           ++ 
Sbjct: 315 DDR 317


>gi|260769788|ref|ZP_05878721.1| GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260615126|gb|EEX40312.1| GGDEF family protein [Vibrio furnissii CIP 102972]
          Length = 478

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 13/168 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVG 151
            YN   Q  R+D L+G+ N  AF   L +  E      +++  D+D FK +ND +GH  G
Sbjct: 318 QYNAHHQQLRLDTLTGIQNRRAFDLDLAAMAENQQSPYALLLIDVDKFKHVNDTWGHQFG 377

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+A ++  L     T   + R+GG+EFAA    + +   A L   L +++ + +    
Sbjct: 378 DNVLARVAQVLTKNLDT-HSIYRIGGDEFAALVPVNDD---APLGEQLNRLVLDMRHQKW 433

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                H+T+S G++          ++  AD+ALY +K++GR+   C+S
Sbjct: 434 REQGCHVTLSIGVS--IGPNTPCELVNHADKALYRSKENGRD---CWS 476


>gi|163795443|ref|ZP_02189410.1| GGDEF domain protein [alpha proteobacterium BAL199]
 gi|159179429|gb|EDP63960.1| GGDEF domain protein [alpha proteobacterium BAL199]
          Length = 561

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 101/220 (45%), Gaps = 28/220 (12%)

Query: 46  ANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR 105
             + L+  G T  +  E + +    LV ++  + + L  ++         ++  +  LS 
Sbjct: 340 GTVVLWRSGATAVWDEEEVAL----LVEVADQLGIALQQVA---------AHEHLRTLSS 386

Query: 106 IDCLSGLLNHSAFISSLGSY-NEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAF 157
           +D ++GLLN  AF  ++ +  N   S       +V+ D+D FK++ND  GH VGDK +  
Sbjct: 387 VDAMTGLLNRRAFDEAITARLNPSTSTAAGPGTLVYVDLDNFKKVNDTRGHQVGDKALIH 446

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ--INISSGPS 215
           L+D L     T     RLGG+EFA    G     A   A    +IIE  +  +  S  P 
Sbjct: 447 LADILKRQSHTGDIGARLGGDEFALWMEGIDTSTAPERAE---RIIEMGKELLTYSGSPD 503

Query: 216 IHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
             I +S G+A  E    E    +I RAD  +Y  K+SG+ 
Sbjct: 504 HPIGLSIGMAVFEPGSGETRENLIARADAVMYEIKRSGKG 543


>gi|218529510|ref|YP_002420326.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium chloromethanicum CM4]
 gi|218521813|gb|ACK82398.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium chloromethanicum CM4]
          Length = 811

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 85/172 (49%), Gaps = 11/172 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I+ L+  D L+GL N + F    G           ++ +++ D+D FK++ND  GH  GD
Sbjct: 372 IAYLATRDPLTGLSNRAVFHDVAGEACTASMRGGPRVHLLYLDLDGFKKVNDTAGHCAGD 431

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++  ++D+L         V RLGG+EFA         EA ILA  +  I    +  +  
Sbjct: 432 DLLRQVADRLCASVDANAQVFRLGGDEFAILHRSRESAEAEILAEAV--IASLHRPYLIE 489

Query: 213 GPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF-SDIE 262
           G    I +S GIA        +  ++ +AD ALY AK++GR R  CF +D+E
Sbjct: 490 GMQAEIGVSIGIARAPQDATELQDLMRKADLALYTAKEAGRGRWHCFEADLE 541


>gi|170727794|ref|YP_001761820.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169813141|gb|ACA87725.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
          Length = 518

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 20/169 (11%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-----YNEKLS--IVFFDIDYFKQINDNFGHPVGDK 153
            +L+ +D L+ L N +A    +         +KL   +   DID+FK IND+FGH  GDK
Sbjct: 354 QKLNLLDSLTQLPNRAALEERMDQEFRNFQRQKLPLWVAVADIDHFKTINDSFGHSTGDK 413

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  ++  L        FV R GGEEF             + A D+ +++   +  + S 
Sbjct: 414 TLQVIAMALKNSLRDTEFVARYGGEEFVLLI-------PEVNAIDIEQLLNRVREKVKSI 466

Query: 214 P------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           P       I +T+S G A+    E I+    RAD ALY AK   R+RV+
Sbjct: 467 PFKFKNQRITVTVSIGAAQILENELINETFERADAALYRAKHESRDRVI 515


>gi|120556575|ref|YP_960926.1| response regulator receiver modulated diguanylate cyclase
           [Marinobacter aquaeolei VT8]
 gi|120326424|gb|ABM20739.1| response regulator receiver modulated diguanylate cyclase
           [Marinobacter aquaeolei VT8]
          Length = 561

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 86/182 (47%), Gaps = 11/182 (6%)

Query: 89  ILKELFISYNRISQLSRI---DCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDY 138
           +++ + +  +R  QLS +   D L+ LL HS     +    ++ +        V  DID+
Sbjct: 379 LIRAVQMRCHRARQLSELMNRDSLTRLLKHSVIKQEVERERQRCTRGDYSSVAVLLDIDH 438

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND +GH  GD VI  L++ L         +GR GGEEF    L   E  AA+    
Sbjct: 439 FKQVNDTWGHAQGDVVIRTLANLLRNRLRESDAIGRYGGEEF-LVVLPHCEPSAALRLMS 497

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 +     S     H+T SAG+A+         II  AD+ALY  K++GRN V  +
Sbjct: 498 GILESFSELEFSSEEEVFHVTFSAGVAKINDFSAGDQIIEAADKALYERKRNGRNGVTLY 557

Query: 259 SD 260
           +D
Sbjct: 558 TD 559


>gi|330972724|gb|EGH72790.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 397

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 96/212 (45%), Gaps = 25/212 (11%)

Query: 68  NLSLVIISITISLLLGYI--SGSILKELFISYNRISQL-----SRIDCLSGLLNHSAFIS 120
           N  L + ++ + L+  Y     S +  LF    R+ Q+     +R D L+ L N      
Sbjct: 191 NAVLFVSTVALLLMASYFLERASRMSYLFALRGRLLQVQLMEFARTDGLTRLFNRRYQDE 250

Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV---FGTPM 170
            + S  E        ++I+  DID+FK  NDN+GHP GD  +  L  +L       G   
Sbjct: 251 VMASVWEHARNTPANVAIILLDIDHFKSYNDNYGHPQGDTCLRLLCQKLQQSAHDHGAVA 310

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
           F  R GGEE     +G   Q   +       + E    +   G +  +TIS G+A  C  
Sbjct: 311 F--RFGGEEVLVLMIGDVVQAREVAGALQSAVAELKLPHPVLGENALVTISLGVA--CAT 366

Query: 231 EPIST---IIYRADQALYVAKKSGRNRVVCFS 259
            P+++   +I  AD ALY AK++GRN  VCF+
Sbjct: 367 APLTSAENLIGAADNALYAAKRAGRN-CVCFA 397


>gi|325291390|ref|YP_004267571.1| diguanylate cyclase [Syntrophobotulus glycolicus DSM 8271]
 gi|324966791|gb|ADY57570.1| diguanylate cyclase [Syntrophobotulus glycolicus DSM 8271]
          Length = 358

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 123/278 (44%), Gaps = 51/278 (18%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL 69
           ++W  +   +  F+P+  M++ +I       TV+F+         L   Y + Y LV  L
Sbjct: 98  ALWFAN-GGISGFTPYLSMVFAAI-------TVVFLNG------KLKSRYSISYFLVL-L 142

Query: 70  SLVIIS--------ITISLLLGYISGSILKEL---FIS---------YNRISQ----LSR 105
           SL+ I           +S L GY   +I  ++   FI+         YNRI +    LS 
Sbjct: 143 SLITIQGLYPDSVYFPVSRLQGYWDKAIFFQMVFFFIANLLYVYSEEYNRIHKKAVKLSL 202

Query: 106 IDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D ++GL N     + +     K        S++  DID FK IND +GH  GDK I  +
Sbjct: 203 TDEMTGLYNWRFVRNHIQKDLNKSIRTGVQCSVLMIDIDNFKIINDRYGHQAGDKAIKMI 262

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L          GR GG+EF       + Q A  +A  +RK +E + +       + +
Sbjct: 263 AGILKTSVRNIDIAGRYGGDEFFVLLPEINAQAAETIAERIRKTVEETFLK----DGMPL 318

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T+S G+A+      +  I   AD+ +Y AK +G+N+V+
Sbjct: 319 TVSIGVAD-IQGSTLDEIFRNADKNMYKAKIAGKNKVL 355


>gi|213581981|ref|ZP_03363807.1| hypothetical protein SentesTyph_12574 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 349

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 111/235 (47%), Gaps = 30/235 (12%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGL-------TPFYGLEYILVE---- 67
           + S+  + F++++ + F+  ++ ++ +  +   Y  L        P + L  +L      
Sbjct: 110 MWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLW-LTALLASVQLN 168

Query: 68  ---NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDCLSGLLN 114
              N+  +++ +T++ +L Y   I      E ++ Y        R+  ++  D L+G  N
Sbjct: 169 QYVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTAN 228

Query: 115 HSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM- 170
             +  S LG      E  +++  D+DYFK  NDN+GH  GD  +A ++  +     TP  
Sbjct: 229 RRSMESFLGDALRQTEPFALIMLDVDYFKNYNDNYGHQAGDACLAKVACVVKRSIRTPAD 288

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGI 224
            V R GGEEF      SS  EAA++A  ++  + E +  +++S  S  +T+S GI
Sbjct: 289 LVARYGGEEFVVVLPSSSLNEAALVAKRIQTNLRETALPHVASAVSETVTVSMGI 343


>gi|77165487|ref|YP_344012.1| PAS sensor diguanylate cyclase/phophodiesterase [Nitrosococcus
           oceani ATCC 19707]
 gi|254434956|ref|ZP_05048464.1| PAS fold family [Nitrosococcus oceani AFC27]
 gi|76883801|gb|ABA58482.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosococcus oceani ATCC 19707]
 gi|207091289|gb|EDZ68560.1| PAS fold family [Nitrosococcus oceani AFC27]
          Length = 811

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 9/172 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I+  +  D L+GL+N   F       +++L + + + ++ +FD+D FK IND  GH  G
Sbjct: 382 QITHQATHDSLTGLVNRREFEHRLERVLATLKAESAEYALCYFDLDRFKVINDTCGHVAG 441

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  +S+ L         + RLGG+EF       S ++A  +A  + K IE+ Q    
Sbjct: 442 DELLRQVSEVLRGQIRKRDTLARLGGDEFGVLLEHCSLKQAQRVATAIHKAIEDFQFTW- 500

Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            G S  I +S G+         I+ ++  AD A Y AK  GRNR+  + + +
Sbjct: 501 EGKSFRIGVSIGLVPITKASMGIAVVLKAADTACYAAKNKGRNRIHVYHETD 552


>gi|27377700|ref|NP_769229.1| hypothetical protein blr2589 [Bradyrhizobium japonicum USDA 110]
 gi|27350845|dbj|BAC47854.1| blr2589 [Bradyrhizobium japonicum USDA 110]
          Length = 618

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 28/194 (14%)

Query: 84  YISGSI--LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFF 134
           Y+ G I  + E   S  RIS L+  D L+ L N SAF + L    E         +++  
Sbjct: 170 YVVGVIEDVTEQLASQARISHLAHHDALTDLPNRSAFNAELDERLELAQEALTSFAVLSL 229

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK++ND FGHPVGD ++   +   +       FV R+GG+EF      ++ +E  +
Sbjct: 230 DLDRFKEVNDVFGHPVGDMLMRAAA-DRLAAEADGAFVARIGGDEFMILMPDNARREDML 288

Query: 195 -LANDLRKIIEN--------SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            LA  L ++I          SQ+ +S G +++       A         T++  AD ALY
Sbjct: 289 TLAERLVEVIGKELEIDDYLSQVGVSVGIAVYPDDGVDAA---------TLLANADSALY 339

Query: 246 VAKKSGRNRVVCFS 259
            AK+ GR RV  F 
Sbjct: 340 RAKREGRARVRFFE 353


>gi|304395432|ref|ZP_07377315.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pantoea sp. aB]
 gi|304356726|gb|EFM21090.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pantoea sp. aB]
          Length = 867

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 15/172 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           RI  LSR D L+GL N    +  L  +      +  L++V  D+D F+ IN+ +GH  GD
Sbjct: 435 RIQFLSRHDVLTGLSNRMQLLEFLTLHLAITDGSAPLTLVTLDLDQFRPINETWGHAAGD 494

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V++ ++ +L    G    V RL G+EF    L   E     +A    +++   Q  IS+
Sbjct: 495 EVLSQIAQRLKRCIGPQELVARLSGDEF---VLVLREANRERVAQRCAQLVHEVQQPIST 551

Query: 213 GPSIH-ITISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRNRVVCFSD 260
           G  +H +TIS GIA  C  +  S    ++  AD AL  A+ +GRN+ V +++
Sbjct: 552 GQHVHYLTISMGIA--CAPQDASHPEALLEMADIALNEARDAGRNQWVWYAN 601


>gi|291518050|emb|CBK73271.1| diguanylate cyclase (GGDEF) domain [Butyrivibrio fibrisolvens 16/4]
          Length = 254

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 76/169 (44%), Gaps = 18/169 (10%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  L   D L+GL N       L            K  +   DID+FK++ND FGH +GD
Sbjct: 92  IQTLVEYDALTGLNNRRYADKKLAEIRIRAVELGIKYCVCISDIDFFKKVNDTFGHEMGD 151

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEE----FAAAALGSSEQEAAILANDLRKIIENSQI 208
           +V+  ++++L           R GGEE    F    L  + +E  ++ N++R I      
Sbjct: 152 EVLRRVAEKLKAGMVGKGIAARWGGEEFLLIFDGRELDIARRELELIMNEVRTI------ 205

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                    IT+S G+      E I   + RAD  LY AK+ GRN++VC
Sbjct: 206 -WVPDSDRQITMSFGLTALQPGEDIDDALKRADDNLYQAKEGGRNQIVC 253


>gi|255318187|ref|ZP_05359426.1| two-component response regulator [Acinetobacter radioresistens
           SK82]
 gi|262379605|ref|ZP_06072761.1| two-component response regulator [Acinetobacter radioresistens
           SH164]
 gi|255304733|gb|EET83911.1| two-component response regulator [Acinetobacter radioresistens
           SK82]
 gi|262299062|gb|EEY86975.1| two-component response regulator [Acinetobacter radioresistens
           SH164]
          Length = 855

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 13/157 (8%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F ++L          ++ L + + D+D FK +ND+ GH +GD++I  +S
Sbjct: 429 DHLTGLANRQTFETNLQQAFETQHHSSKPLFLCYIDLDDFKPLNDSLGHLIGDQIIKSVS 488

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKIIENSQINISSGPSIH 217
           D+L  +  T  F+GR  G+EFA   +  +++   I   +  L+   +  QI+      IH
Sbjct: 489 DRLQALLQTGDFLGRFAGDEFALLMVNRNKRSEVITTAEEILKLFTQPFQIDEH---KIH 545

Query: 218 ITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRN 253
           ++ S GI A+ C  +  S ++Y A  A+  AK+ GRN
Sbjct: 546 LSASIGIVADDCSIQRSSELLYHAVLAMKEAKRQGRN 582


>gi|212639188|ref|YP_002315708.1| PAS, GGDEF and EAL domain-containing protein [Anoxybacillus
           flavithermus WK1]
 gi|212560668|gb|ACJ33723.1| Multidomain signal transduction protein (contains PAS, GGDEF and
           EAL domains) [Anoxybacillus flavithermus WK1]
          Length = 594

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 93/174 (53%), Gaps = 13/174 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
           +  ++++LS  D L+ + N   F   L         YN++L+I+F D+D FK IND  GH
Sbjct: 156 TMEQLARLSNYDLLTNVPNRQLFTKRLQHLLDTARRYNQQLAILFLDLDRFKYINDELGH 215

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQ 207
             GD ++  ++++L  +  T   + R+GG+EF        + QEA  +A    +IIE+ Q
Sbjct: 216 YSGDILLQKVANRLKKLLRTKDTLARIGGDEFVVILPKLKDIQEAVSIAE---QIIESLQ 272

Query: 208 IN-ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
              +     I+I+ S GI+   +  +    ++ RAD+A+  AK+SGRNR   ++
Sbjct: 273 APFLLHHKDIYISASIGISVYPNDGDDGEMLLRRADRAMQKAKESGRNRFELYT 326


>gi|54310062|ref|YP_131082.1| hypothetical protein PBPRA2946 [Photobacterium profundum SS9]
 gi|46914501|emb|CAG21280.1| hypothetical protein PBPRA2946 [Photobacterium profundum SS9]
          Length = 284

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 11/163 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEK----LSIVFFDIDYFKQINDNFG 147
           I Y R+  ++  D LSGL N S+F   +    + +E+    L +V FD+D FKQ+ND +G
Sbjct: 125 IEYRRVKNMAMRDHLSGLGNRSSFEQDIQHSIAMSERRDVGLVVVIFDLDNFKQVNDRYG 184

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GDKVI   +  L     T     RLGG+EF      ++++ A  +A  +  +I + Q
Sbjct: 185 HLDGDKVIRRFAIALKHAVRTSDRCYRLGGDEFIMLLQPATDKSAQKVAERVHHLINDDQ 244

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
               +  ++ ++ S G A+    +   ++I RAD+ LY  K++
Sbjct: 245 ----ALRTLKVSSSHGYAQYQKGDTTLSLIDRADRQLYKQKRN 283


>gi|83747638|ref|ZP_00944674.1| Signal transduction protein EAL [Ralstonia solanacearum UW551]
 gi|83725690|gb|EAP72832.1| Signal transduction protein EAL [Ralstonia solanacearum UW551]
          Length = 580

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 21/183 (11%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFIS------SLGSYN-EKLSIVFFDIDYFKQINDNFGH 148
           +  RI  L+  D L+GLLN  A         +L   N  ++S++F D+D FK IND  GH
Sbjct: 132 AQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRNGTRVSVMFLDLDRFKNINDTLGH 191

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+++  ++ +L         V RLGG+EF            ++     R++ E    
Sbjct: 192 QFGDQLLREVAARLQACAREADTVARLGGDEFVVML-------ESLDGMGTRRVAERILA 244

Query: 209 NISS-----GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF-SDI 261
            I +     G  + + +S GIA   H  +  +T++ +AD A+Y+AK+ GRN    F SD+
Sbjct: 245 AIGAPFHIEGQELFVGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNFQTFTSDL 304

Query: 262 ENN 264
           ++ 
Sbjct: 305 DDR 307


>gi|117922446|ref|YP_871638.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella sp. ANA-3]
 gi|117614778|gb|ABK50232.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella sp. ANA-3]
          Length = 315

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 11/167 (6%)

Query: 106 IDCLSGLLNHSAFISSLG------SYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+G+ N   F   L       S N+  LS++  D+D+FK+ ND +GH  GD+ +  +
Sbjct: 147 LDSLTGVANRRQFEQRLPEIWRHCSRNQAYLSVIMLDVDFFKRYNDRYGHQEGDQCLRLV 206

Query: 159 SDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +D +  +   P   + R GGEEF      +    A  LA  +   +    +         
Sbjct: 207 ADAVKGMLKRPNDLIARYGGEEFICILPEAKLSGAMRLAQAMVDAVHALHLEHLDSEFGE 266

Query: 218 ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +T+SAGIA  +   ++   +++  ADQ LY+AK +GRN+VV   DIE
Sbjct: 267 VTVSAGIATIQPLAEQSWESLVEVADQQLYIAKHNGRNQVVGI-DIE 312


>gi|325971874|ref|YP_004248065.1| diguanylate cyclase [Spirochaeta sp. Buddy]
 gi|324027112|gb|ADY13871.1| diguanylate cyclase [Spirochaeta sp. Buddy]
          Length = 403

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 16/165 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAF---ISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGD 152
           ++ + ++ D L+GL N   F   + S+ S N+   K+++++ D+D FK IND +GH +GD
Sbjct: 232 QMEKYAKYDMLTGLPNRRYFFERLESVVSENQGANKIAVLYIDLDGFKTINDTYGHQIGD 291

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-----LGSSEQEAAILANDLRKIIENSQ 207
           KV+  +  +L        F  RLGG+EFA  A       S++Q AA +   L+  +    
Sbjct: 292 KVLVAVGSRLAESISESDFAARLGGDEFAIIASNIQNYASAQQFAANVQTVLQSTVYMEN 351

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           I  S   SI + +     E    E   T++ +AD A+Y AK++ +
Sbjct: 352 IAYSVKASIGLAVYPD--EGADSE---TLLRKADAAMYEAKRNSK 391


>gi|239831289|ref|ZP_04679618.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239823556|gb|EEQ95124.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 423

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 87/166 (52%), Gaps = 10/166 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG----SYNEK---LSIVFFDIDYFKQINDNFGHP 149
           +  +++++  D L+GL N   F+  L     +++E     +++  DID FK  ND +GH 
Sbjct: 235 HGDMARVAETDELTGLPNRRHFMKRLARAELAFSEDGVAYTVMLIDIDNFKHWNDTYGHA 294

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD+ +   +D  V +      + R GG+EF+    G  E EA  +A ++   + ++ + 
Sbjct: 295 LGDQALVHFADVGVDILNRRGVLARFGGDEFSILLPGMHEHEATEIAREIVGAVNHTPL- 353

Query: 210 ISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRN 253
           + +G  + +T+S GIA     +  S   +  RAD ALY  K++GRN
Sbjct: 354 VFNGRKLILTVSIGIASEEPGDERSDLDVFARADLALYKLKQAGRN 399


>gi|229514709|ref|ZP_04404170.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           cholerae TMA 21]
 gi|229348689|gb|EEO13647.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           cholerae TMA 21]
          Length = 359

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 79/164 (48%), Gaps = 19/164 (11%)

Query: 103 LSRIDCLSGLLNH---SAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+G LN      F+     +    NE   I   DID FK +ND +GH  GDKVI
Sbjct: 178 LSTRDALTGTLNRHQLDVFLKKCLRHRQLANESAVIAVIDIDRFKSVNDLYGHDTGDKVI 237

Query: 156 AFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
                Q+V +  T       + RLGG+EF      +S  +A ++ + +   I+ +     
Sbjct: 238 T----QVVEIMNTHCRELDLLFRLGGDEFLLLFENTSLTDATLVMSHIGCRIQQTHYPYH 293

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +     +T+S G+AE    +       RADQALY +KK G+NRV
Sbjct: 294 AK----VTVSVGLAEALRTDDPEQWFKRADQALYHSKKMGKNRV 333


>gi|229491950|ref|ZP_04385770.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodococcus erythropolis SK121]
 gi|229321163|gb|EEN86964.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodococcus erythropolis SK121]
          Length = 791

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 16/185 (8%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQIN 143
           GS +   +     I +L+ ID L+GL N  +F + L S      ++ +   D+D FK IN
Sbjct: 338 GSDITHSYHQRQNILRLAEIDSLTGLRNRYSFNAQLSSRIRDGHRVWLAILDLDNFKSIN 397

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-------ALGSSEQEAAILA 196
           D  GH +GD V+  ++ +L  V  +    GRLGG+EFA A        +GS+++    + 
Sbjct: 398 DRLGHHIGDDVLRDVASRLHSVLRSNEICGRLGGDEFAIAFDDVAFDDIGSADE----VE 453

Query: 197 NDLRKIIENSQINIS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
              + I+++ +   S  G  I I  S G        + +  ++  AD ALY AK+SGRN+
Sbjct: 454 KRFQTILDSFERPFSLVGNQIRIRASLGYGSMPDDADSLEDLVIVADLALYHAKESGRNQ 513

Query: 255 VVCFS 259
           +  F 
Sbjct: 514 IRAFD 518


>gi|222870335|gb|EEF07466.1| predicted protein [Populus trichocarpa]
          Length = 330

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 86/186 (46%), Gaps = 23/186 (12%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------------ISSLGSYNEKLS---IVFFDI 136
           ++ +Y  +   S  D L+GLLN   F             ++  G   E +    +   DI
Sbjct: 133 VYHNYQSLLDYSERDALTGLLNRKTFDEQFLRLSLQEAPMAMPGVATEDVPGQWLAAIDI 192

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND FGH  GD+V+  +++ L   F     V R GGEEF       S   A    
Sbjct: 193 DHFKRINDRFGHLYGDEVLILVANILRSCFDAKDRVFRFGGEEFVVLLRSVSLVNARKAL 252

Query: 197 NDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             LR  +E+ +      P +  IT+S G A      P+  ++  ADQALY AK+ GRN+ 
Sbjct: 253 ERLRHDVESYEF-----PQVGRITVSTGFAAMGTGAPVE-VLGHADQALYHAKEHGRNQT 306

Query: 256 VCFSDI 261
             + D+
Sbjct: 307 WYYGDL 312


>gi|108797336|ref|YP_637533.1| diguanylate cyclase [Mycobacterium sp. MCS]
 gi|108767755|gb|ABG06477.1| diguanylate cyclase [Mycobacterium sp. MCS]
          Length = 370

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 27/175 (15%)

Query: 107 DCLSGLLNHSAFISS----LGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN  A        L S+ ++   L++   D+D FKQ+ND+ GH +GD+ +  ++
Sbjct: 207 DPLTGLLNRRAVYQQIEQLLSSHRDRHVHLAVAVVDLDDFKQLNDSHGHAIGDEALVAVA 266

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L    G    VGRLGGEEF  A L     EA  + +  +++   + +++   P   +T
Sbjct: 267 QALRAGAGEGAVVGRLGGEEFVLAEL----LEAGQIDHWAQRMC--TAVDVVPFP---VT 317

Query: 220 ISAGIAERCHKEP--------ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G+A  C   P        I  +I  AD A+Y AK++G N+   F   + + C
Sbjct: 318 ASVGVAAVCLPLPADDDAQTVIHMLIGAADHAMYAAKRAGGNQ---FRHDDRSAC 369


>gi|71278350|ref|YP_268068.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71144090|gb|AAZ24563.1| sensory box/GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 428

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 86/179 (48%), Gaps = 18/179 (10%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
              +L+EL +S       SR D L+ L N   F   L S       +    S++  DID+
Sbjct: 255 KNQLLEELILS-------SRRDPLTELYNRRYFTELLHSEITRSRRFKRGFSLLMLDIDH 307

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND +GH  GD  +   S  +         + R GGEEF        +  A ++A  
Sbjct: 308 FKSINDRYGHACGDAALIAFSKAVTNSIREVDTICRWGGEEFLVLLPEIPKVTAMVVAEK 367

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRV 255
           +RK IEN +  I  G  I +T+S G+ E    + I  S++I + DQ LY AK +GRN++
Sbjct: 368 IRKNIENLE-TIYEGDLIKVTVSIGL-EYFSGDAIEMSSMINKVDQILYRAKDTGRNKI 424


>gi|83594095|ref|YP_427847.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodospirillum rubrum ATCC 11170]
 gi|83577009|gb|ABC23560.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodospirillum rubrum ATCC 11170]
          Length = 820

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 10/172 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQINDNFGHP 149
           +R++ L++ D L+GL+N  +F   L     +        ++++  D+D FK +ND+ GH 
Sbjct: 370 DRLTFLAQRDPLTGLINRRSFFDDLEKAVARAGRFPAAGVAVISIDLDRFKYVNDSLGHQ 429

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD ++  +++ L         + RLGG+EFA    G + + A  +A  LR  + +   +
Sbjct: 430 AGDCLLKEVAEVLFGRLRETDLLARLGGDEFAVLLHGVNREGALHVAEALRLCLADYAFS 489

Query: 210 ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              G S+ I  S G+A      +    ++ RAD A+ +AK++GRNRV  F +
Sbjct: 490 Y-DGKSVEIGCSLGVATWAADVDDPEDLLARADMAMRLAKRAGRNRVHLFEE 540


>gi|221196391|ref|ZP_03569438.1| diguanylate cyclase [Burkholderia multivorans CGD2M]
 gi|221203063|ref|ZP_03576082.1| diguanylate cyclase [Burkholderia multivorans CGD2]
 gi|221176997|gb|EEE09425.1| diguanylate cyclase [Burkholderia multivorans CGD2]
 gi|221182945|gb|EEE15345.1| diguanylate cyclase [Burkholderia multivorans CGD2M]
          Length = 492

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 10/168 (5%)

Query: 95  ISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           ++   I  L+R D L+GL N           +S     +  +++++ D+D FK IND FG
Sbjct: 310 LTEQHIRHLARHDALTGLPNRHELHAELERMLSRPRRPDTAVAVMYLDLDGFKAINDRFG 369

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+++  ++++L           R+GG+EF  A   ++    + +A  L   I ++ 
Sbjct: 370 HQAGDELLTQVAERLGRTLRDGTLAARIGGDEFVVAVDDTTMDACSRVAAQLIAQI-SAP 428

Query: 208 INISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +S G ++   IS GIA +  H  P   +I +AD ALY AK +G+ R
Sbjct: 429 YTLSIGETVRFGISIGIALDDGHGTP-DELIRQADSALYDAKSAGKGR 475


>gi|71907293|ref|YP_284880.1| diguanylate cyclase with PAS/PAC sensor [Dechloromonas aromatica
           RCB]
 gi|71846914|gb|AAZ46410.1| diguanylate cyclase with PAS/PAC sensor [Dechloromonas aromatica
           RCB]
          Length = 820

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 10/170 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDN 145
           L ++   + +L+  D L+ L N  A    L     +L        +   DID+FK IND 
Sbjct: 652 LLMANQELERLAHQDALTKLPNRLAANERLRQEFLRLKRTGSPYCVFMMDIDHFKMINDT 711

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD V+   +  L        FV R GGEEF A    +  + A + A  +R  I  
Sbjct: 712 YGHETGDHVLEHFAVTLTGALRATDFVARFGGEEFIALMPDTEIEGAMVAAEKVRIAIHQ 771

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  +    ++ I +     E  +++     + RAD ALY +KK GRNRV
Sbjct: 772 EKFPVVGCVTVSIGVGNSRTEDANED---ETVRRADAALYRSKKDGRNRV 818


>gi|30018813|ref|NP_830444.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 14579]
 gi|296501388|ref|YP_003663088.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
 gi|29894355|gb|AAP07645.1| Sensory box/GGDEF family protein [Bacillus cereus ATCC 14579]
 gi|296322440|gb|ADH05368.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
          Length = 567

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 88/172 (51%), Gaps = 6/172 (3%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHP 149
           L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  GH 
Sbjct: 135 LRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLGHM 194

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD +++ ++ +L  V G    + RLGG+EF        + + + LA  +    +     
Sbjct: 195 IGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQAP--F 252

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 253 MLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304


>gi|332305197|ref|YP_004433048.1| diguanylate cyclase with beta propeller sensor [Glaciecola
            agarilytica 4H-3-7+YE-5]
 gi|332172526|gb|AEE21780.1| diguanylate cyclase with beta propeller sensor [Glaciecola
            agarilytica 4H-3-7+YE-5]
          Length = 1071

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 54/153 (35%), Positives = 72/153 (47%), Gaps = 9/153 (5%)

Query: 120  SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
            S L S +  L     D+D+FKQ+ND +GH  GD V+  +   L  VF    ++ R GGEE
Sbjct: 885  SQLVSKDADLIFFLMDLDHFKQVNDRYGHSAGDAVLVAVKSILETVFRDTDYLLRWGGEE 944

Query: 180  FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPIS--- 234
            F   A       A  LA  LR  I+  + NI    +I++T S G +       +P +   
Sbjct: 945  FLIVARFVDRSSAETLAERLRCSIQAHRFNIEDNVAINVTCSIGFSVFPLLSNQPTALNW 1004

Query: 235  -TIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
               I  AD  LY AKKS RN  V   D+   TC
Sbjct: 1005 ERTIDVADLCLYAAKKSSRNTWVGLLDL---TC 1034


>gi|326402790|ref|YP_004282871.1| hypothetical protein ACMV_06420 [Acidiphilium multivorum AIU301]
 gi|325049651|dbj|BAJ79989.1| hypothetical protein ACMV_06420 [Acidiphilium multivorum AIU301]
          Length = 377

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 8/170 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L  +  ++  L+  D L+GL N    +  +     +       L +   D+D+FK+IN
Sbjct: 204 RQLRDALKQVQILATRDELTGLPNRRHALELIERETARARRSGAPLCVAILDLDHFKRIN 263

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGH VGD+V+     +  +V        R GGEEF      S+  +A  +   LR+ +
Sbjct: 264 DTFGHGVGDEVLRTFGREGRLVLRADNIFARWGGEEFILVMPDSTLIDAQTIVRRLREHM 323

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            + +   +S      T SAGIAE    E +     RAD ALY AKK GR+
Sbjct: 324 ASPEC-WASCLRARTTFSAGIAEFLVGETLDETFIRADAALYEAKKLGRD 372


>gi|323497242|ref|ZP_08102262.1| putative regulatory components of sensory transduction system
           [Vibrio sinaloensis DSM 21326]
 gi|323317817|gb|EGA70808.1| putative regulatory components of sensory transduction system
           [Vibrio sinaloensis DSM 21326]
          Length = 318

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 92/166 (55%), Gaps = 13/166 (7%)

Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++L++ D L+ + N        S  I+  G +   LS++  D+D+FK  NDN+GH  GD
Sbjct: 148 LAKLAQEDGLTKVKNRRFIDEKLSEMIAIHGRHGMPLSLILLDVDHFKAYNDNYGHIQGD 207

Query: 153 KVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDLRKIIEN-SQIN 209
           K +  ++  L  +F      VGR GGEEF    L  ++Q+  I  A  +++ +E+ + ++
Sbjct: 208 KCLVEIATALRELFVRNGELVGRYGGEEF-VVLLSHTDQDKLIRDAQRIQQRLESLALVH 266

Query: 210 ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
             SG +  +T+S G+       +E   ++ + ADQALY AK+SGRN
Sbjct: 267 EFSGVANSVTVSQGLLFINPTGRESAESLYHSADQALYRAKESGRN 312


>gi|260222025|emb|CBA31177.1| hypothetical protein Csp_C27240 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 361

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 99/211 (46%), Gaps = 27/211 (12%)

Query: 73  IISITISLLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSL 122
           +IS+ +S  +G     ++     ++ +Y+ +   S+ D L+GL N  A         S L
Sbjct: 139 LISMRLSQPMGEHDQELINGILRVYSNYHALLDESQRDRLTGLYNRHAMDLNIDRMWSVL 198

Query: 123 G-----------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           G           S  +  ++   DID+FK++ND +GH +GD+++  +S  +   F     
Sbjct: 199 GRESTQSDARRNSVVQMYALAVIDIDHFKKVNDQYGHILGDEILLLVSRLISSCFRKSDP 258

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHK 230
           V R GGEEF   A   S Q    L   +R  +E         P +  +T+S G A     
Sbjct: 259 VYRYGGEEFLVVAGAESPQAMHTLFERVRSKVEGHYF-----PQVESVTVSVGYAIIDPA 313

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              S  I RAD+ALY AK+ GRN+V  FSD+
Sbjct: 314 LSPSENIGRADRALYCAKEMGRNQVQSFSDL 344


>gi|255318419|ref|ZP_05359652.1| diguanylate cyclase [Acinetobacter radioresistens SK82]
 gi|262378649|ref|ZP_06071806.1| diguanylate cyclase [Acinetobacter radioresistens SH164]
 gi|255304411|gb|EET83595.1| diguanylate cyclase [Acinetobacter radioresistens SK82]
 gi|262299934|gb|EEY87846.1| diguanylate cyclase [Acinetobacter radioresistens SH164]
          Length = 452

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 78/156 (50%), Gaps = 7/156 (4%)

Query: 107 DCLSGLLNH---SAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ LLN    +  I+   +++ K    L+++  D D+FK IND FGH  GD  + FL+
Sbjct: 294 DSLTQLLNRRYLNTIINREINFSRKNGSPLTLLAIDADHFKGINDKFGHAAGDLALQFLA 353

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L+       +  R+GGEEF    + S    A  +A ++R  IE + I  + G S + T
Sbjct: 354 EVLLECTKGSDYAFRIGGEEFLLLLVDSDLSRAQSVAENIRMRIEETVIRSTMGVSFNFT 413

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S G             +  AD ALY AK +GRN V
Sbjct: 414 VSVGAVLYDGHPDYQRFLDAADSALYAAKNNGRNNV 449


>gi|27377512|ref|NP_769041.1| hypothetical protein blr2401 [Bradyrhizobium japonicum USDA 110]
 gi|27350656|dbj|BAC47666.1| blr2401 [Bradyrhizobium japonicum USDA 110]
          Length = 634

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 17/181 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPV 150
            R+  L+  D L+GL N   F   L      +Y ++  L+++  D+D+FK  ND +GHP 
Sbjct: 448 TRLETLATEDSLTGLANRRCFDDRLNDEWARAYRDRSSLALLMIDVDHFKAYNDEYGHPA 507

Query: 151 GDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD  +  ++  L   +        R GGEEFA     +     A +   +R+ I  + + 
Sbjct: 508 GDACLRVVAKILAAEMHRAGDLAARYGGEEFAMLLPNTDAAGCARIGERIREAIHQAGLV 567

Query: 210 ISSGP-SIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            +S P S  +T+S G A      ER      ++++  AD+ALY AK  GR+R++   ++ 
Sbjct: 568 HASSPISASVTVSLGGATCRPSFERTAGS--ASLVEAADRALYAAKDMGRDRLMMSGEVM 625

Query: 263 N 263
           N
Sbjct: 626 N 626


>gi|330828609|ref|YP_004391561.1| GGDEF domain-containing protein [Aeromonas veronii B565]
 gi|328803745|gb|AEB48944.1| GGDEF domain protein [Aeromonas veronii B565]
          Length = 473

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 29/163 (17%)

Query: 107 DCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI---AFLSD 160
           D L+GL N       +++L   N +  +   DID FK+IND +GHP+GD V+   A L  
Sbjct: 323 DALTGLYNRRYLEEALATLHKENSQYILAIIDIDNFKKINDTYGHPIGDAVLKRTAQLGS 382

Query: 161 QLVVVFGTPMFVGRLGGEE----FAAAALGSSEQEAAILANDLRKIIENSQINISSG--- 213
           QL+    T   + R GGEE    F    + S++Q           ++E  +I++      
Sbjct: 383 QLLEEQAT---LCRFGGEELVAIFEQTDIASAQQ-----------LMEQWRISMGQQDWR 428

Query: 214 -PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              + ++ S GI E  +  P  ++I RAD ALY AK++G+NR+
Sbjct: 429 EKGLSVSFSGGITESLNDAP-DSVIARADAALYQAKQAGKNRL 470


>gi|326938344|gb|AEA14240.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 567

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 88/172 (51%), Gaps = 6/172 (3%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHP 149
           L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  GH 
Sbjct: 135 LRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLGHM 194

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD +++ ++ +L  V G    + RLGG+EF        + + + LA  +    +     
Sbjct: 195 IGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQAP--F 252

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 253 MLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304


>gi|225571421|ref|ZP_03780417.1| hypothetical protein CLOHYLEM_07519 [Clostridium hylemonae DSM
           15053]
 gi|225159897|gb|EEG72516.1| hypothetical protein CLOHYLEM_07519 [Clostridium hylemonae DSM
           15053]
          Length = 514

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 17/177 (9%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHS---AFISSLGSYNEKLSIVFFDIDYFKQIND 144
           S+LKE      +++  S  D L+GL N      + S   SY E++SI++ D+D+FK +ND
Sbjct: 348 SLLKE------QLNNNSNTDFLTGLCNRRFFYEYFSETHSY-EQISILYVDLDHFKMVND 400

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH +GD+ +  ++  L   F   + + R+GG+EF  A      +E  +   D+  +I+
Sbjct: 401 TYGHQIGDEALIMVAATLKKCFPDNL-IARIGGDEFLVARTEPVAEEELVRQADM--LID 457

Query: 205 NSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCF 258
             Q   ++   + + +SA I      EP   I  +I  +D ALY AK+SGR+R   +
Sbjct: 458 GLQDAFNTNSCMKV-LSASIGIAYTTEPAKKIDDLIKESDIALYKAKQSGRSRCCVY 513


>gi|117618369|ref|YP_855541.1| GGDEF family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559776|gb|ABK36724.1| GGDEF family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 384

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 103/210 (49%), Gaps = 13/210 (6%)

Query: 56  TPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL--FISYNRISQLSRIDCLSGLL 113
            PF  + ++ V  L ++++     +L G+   ++ +E        ++  +++ D L+GL 
Sbjct: 170 VPFPAVHWMAVGCL-IIMLETGRRMLNGWFELAVSREHENLTLARQLDAMAKRDPLTGLA 228

Query: 114 NHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N   F       +      + + +I+  D+D+FK+ ND++GH  GD  +  ++D L    
Sbjct: 229 NRRHFDNVGEQILQEARERHGEFAILLLDVDFFKRFNDHYGHLQGDNCLIAVADCLREAI 288

Query: 167 GTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQINISSGPSIHITISAGI 224
             P   V R GGEEF     G+     + +A  +   + E   ++  S  S  +T+S GI
Sbjct: 289 RQPADVVARYGGEEFVLLLPGADALATSAIAKRIAAALAERGILHALSEVSDRVTVSQGI 348

Query: 225 A-ERCHKEPISTIIYRADQALYVAKKSGRN 253
           A     ++ I+ ++ RAD+ALY  K++GRN
Sbjct: 349 ALWHGGQDGIADMLVRADEALYQVKEAGRN 378


>gi|160875457|ref|YP_001554773.1| PAS/PAC sensor-containing diguanylate cyclase [Shewanella baltica
           OS195]
 gi|160860979|gb|ABX49513.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica OS195]
 gi|315267646|gb|ADT94499.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica OS678]
          Length = 346

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 91/203 (44%), Gaps = 39/203 (19%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           +   +++L+  D L+G+ N   F       I  LG     L +V  DID FK +ND +GH
Sbjct: 138 AQTELNRLALTDELTGIANRRHFFQQLEHEIKRLGRLQLPLCLVMMDIDNFKLVNDRYGH 197

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEA--------AILAN-D 198
            VGDK++   + Q +     P  + GRLGGEEFA     ++   A        + LAN D
Sbjct: 198 LVGDKILQHFT-QFISTRTRPYDIFGRLGGEEFALLLPETTVDTAQKIVMRMMSSLANED 256

Query: 199 LRKIIENSQINISSGPSI--------------------HITISAGIAERCHKEPISTIIY 238
           +  I+ + Q   S+G S                      + +  G   +C  +    ++ 
Sbjct: 257 ISAIVADFQYQFSAGVSALTPVIIRHSIDNTTDIADVEQVELPVGTGSQCRSDA-EKLVA 315

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
            AD+ALY AK  GRNR V + ++
Sbjct: 316 EADKALYHAKTLGRNRAVIWDEV 338


>gi|66044125|ref|YP_233966.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63254832|gb|AAY35928.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 397

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 96/212 (45%), Gaps = 25/212 (11%)

Query: 68  NLSLVIISITISLLLGYI--SGSILKELFISYNRISQL-----SRIDCLSGLLNHSAFIS 120
           N  L + ++ + L+  Y     S +  LF    R+ Q+     +R D L+ L N      
Sbjct: 191 NAVLFVSTVALLLMASYFLERASRMSYLFALRGRLLQVQLMEFARTDGLTRLFNRRYQDE 250

Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL---VVVFGTPM 170
            + S  E        ++I+  DID+FK  NDN+GHP GD  +  L  +L       G   
Sbjct: 251 VMASVWEHARNAPANVAIILLDIDHFKSYNDNYGHPQGDTCLRLLCQKLQQSAHEHGAVA 310

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
           F  R GGEE     +G   Q   +       + E    +   G +  +TIS G+A  C  
Sbjct: 311 F--RFGGEEVLVLMIGDVVQAREVAGALQSAVAELKLPHPVLGENALVTISLGVA--CAT 366

Query: 231 EPIST---IIYRADQALYVAKKSGRNRVVCFS 259
            P+++   +I  AD ALY AK++GRN  VCF+
Sbjct: 367 APLTSAENLIGAADNALYAAKRAGRN-CVCFA 397


>gi|39998439|ref|NP_954390.1| sensor histidine kinase/GGDEF domain protein [Geobacter
           sulfurreducens PCA]
 gi|39985386|gb|AAR36740.1| sensor histidine kinase/GGDEF domain protein [Geobacter
           sulfurreducens PCA]
          Length = 565

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 75/159 (47%), Gaps = 9/159 (5%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F  SL         Y    S+   DID+FKQ ND  GH  GD+V+   +
Sbjct: 399 DPLTGLFNLRQFWLSLDHELKRARRYRRNCSLAMIDIDWFKQYNDCHGHLRGDEVLREAA 458

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHI 218
                   T     R GGEEF      ++ + A + A  LR+ +E     +  + P   +
Sbjct: 459 AVFRGCIRTSDIAARYGGEEFVVIMPETTRELALLAAEKLRRAVEEHLFPLRETQPGGAL 518

Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T+S GIA      E    ++  AD+ALY AK+ GRNRVV
Sbjct: 519 TVSIGIATFPDDAEDGRELVEAADRALYRAKEGGRNRVV 557


>gi|312881804|ref|ZP_07741578.1| diguanylate cyclase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370555|gb|EFP98033.1| diguanylate cyclase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 453

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 9/159 (5%)

Query: 107 DCLSGLLNHSAFISS------LGSY-NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ NH  F+ +      +  Y  + L ++  DID+FK IND +GH  GD  +    
Sbjct: 289 DGLTGVYNHRHFVEAASHEYQVSRYLGKPLCLLMMDIDHFKTINDTYGHQTGDDALKHFV 348

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
                       +GR+GGEEFA     +S   A   A  +R++I+ S +  +    I  T
Sbjct: 349 LLCSHKLRNSDLLGRIGGEEFALLMPDTSPLTAIEFAESIRELIKTSPLE-TKKAKITFT 407

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV-VC 257
           +S G++          ++ +AD A+Y AK+ GR++V +C
Sbjct: 408 VSIGVSAMLIDNDFECMLEQADLAMYRAKRLGRDQVQIC 446


>gi|308071261|ref|YP_003872866.1| hypothetical protein PPE_04568 [Paenibacillus polymyxa E681]
 gi|305860540|gb|ADM72328.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 363

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+   S  D L+ L N      SL          +E LS++  DID+FK++ND +GH  G
Sbjct: 192 RLEHTSYTDHLTNLSNRRQLEFSLEEKLPQARQRHEHLSVLVLDIDHFKEVNDTYGHAAG 251

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  L   L+        V R GGEEF       + ++A  +AN +   +   +  ++
Sbjct: 252 DAVLRQLGQILMEKCRPNDVVTRSGGEEFTVLLPNCAFRQALRIANQILSGVNQHEFILA 311

Query: 212 SGPSIHITISAGIAE-RCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFS 259
               + +T+S G+       E +S   ++ +AD+ALY AK +GRNRV  + 
Sbjct: 312 DDLVLKVTVSIGVTTFPGTGEDMSGAALLEQADKALYEAKNAGRNRVCSYE 362


>gi|242238029|ref|YP_002986210.1| diguanylate cyclase [Dickeya dadantii Ech703]
 gi|242130086|gb|ACS84388.1| diguanylate cyclase [Dickeya dadantii Ech703]
          Length = 378

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 98/191 (51%), Gaps = 12/191 (6%)

Query: 78  ISLLLGYISGSILKELFISYN-RISQLSRIDCLSGLLNHSAFISS-----LGSYNEKLSI 131
           ISL++  I GS+L  L   Y   +  ++R D L+ LL   AF  +     + S  E L +
Sbjct: 177 ISLMIAII-GSLLSLLAKKYLIELPTIARYDDLTSLLRRDAFFQASNQALMLSRREDLPV 235

Query: 132 --VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
             +  DID+FKQ+ND  GH  GDK +  +++ +         +GRLGG+EFA     +  
Sbjct: 236 CVMLIDIDHFKQVNDTQGHADGDKTLTVIANLIRDNSRRQDVLGRLGGDEFAIVLPDTPA 295

Query: 190 QEAAILANDLRK-IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           + A+ +A  +R  +IE  + +    P I ++I   +A     E +  +I RAD  LY+AK
Sbjct: 296 ESASRVAERIRTALIELREESEWLSPHISVSIGLTVATDDETE-LDELIRRADTHLYMAK 354

Query: 249 KSGRNRVVCFS 259
           ++ RN  V  S
Sbjct: 355 RT-RNCTVSDS 364


>gi|256822607|ref|YP_003146570.1| diguanylate cyclase [Kangiella koreensis DSM 16069]
 gi|256796146|gb|ACV26802.1| diguanylate cyclase [Kangiella koreensis DSM 16069]
          Length = 486

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 12/159 (7%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N  AF+ +L   + +         ++ +DID FK+IND++GH  GD+V+  L+
Sbjct: 325 DVLTGLPNRRAFMPALTKEHHRSVRLGHNYCVIIWDIDDFKRINDSYGHDFGDRVLVRLA 384

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             + +      +  R+GGEEFA     +  +         R+ + +       G    +T
Sbjct: 385 QIMRISCRDIDYYARIGGEEFAVLLPETDRESGEKAMERFRQEVADETFAAPDGTIHSVT 444

Query: 220 ISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           IS G+A    R   E  S ++  AD+ALY +K  G+N+ 
Sbjct: 445 ISIGLASLDARVVDE--SELLAEADKALYQSKAQGKNQT 481


>gi|330815199|ref|YP_004358904.1| Diguanylate cyclase [Burkholderia gladioli BSR3]
 gi|327367592|gb|AEA58948.1| Diguanylate cyclase [Burkholderia gladioli BSR3]
          Length = 364

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 88/184 (47%), Gaps = 19/184 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQIND 144
           EL  +   + +LS+ D L+ L N     + L G + +      +LS++  D+D FKQ ND
Sbjct: 184 ELLAANRELERLSQSDGLTALPNRRYLDAYLDGEWRKSQREQSELSMLMIDVDRFKQYND 243

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD V+  +   L      P     R GGEEF     G+    A ++A  +R  +
Sbjct: 244 TYGHVAGDDVLRQVGAALQRCMSRPGDLAARFGGEEFGVVLPGTPAGGARLVAEKIR--L 301

Query: 204 ENSQINISSGPSIH---ITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNRVV 256
           E + + +     I    +T+S G A  C     +   +++I  AD ALY AK+ GRNR V
Sbjct: 302 EVAALQVPHAGGIEGGVVTVSIGGA--CVIASPEGSTTSLIETADAALYQAKRGGRNRAV 359

Query: 257 CFSD 260
             +D
Sbjct: 360 IAAD 363


>gi|317491881|ref|ZP_07950316.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920315|gb|EFV41639.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 388

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 88/169 (52%), Gaps = 15/169 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGH 148
           +L I  +++S  +  D L+ L N S F+S L S N   E++ ++F D D FK +ND +GH
Sbjct: 220 DLMIENDQLSYKALHDPLTSLPNRSNFMSMLESMNMMQEQICVMFLDGDGFKAVNDTWGH 279

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--- 205
             GD V+  ++++L  + G    V R+GG+EF+       +Q      +D+ ++IE    
Sbjct: 280 SAGDHVLTTIAERLKTLVGKNDLVARMGGDEFSILLRHVVDQ------DDVMQVIEKILK 333

Query: 206 ---SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
                I + +G  + +++S G          + ++ +AD A+Y +K +G
Sbjct: 334 AMRRTIYLPNGEEVFVSLSIGFTLSNAGSTPAELLEKADAAMYHSKHNG 382


>gi|307824141|ref|ZP_07654368.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
 gi|307734925|gb|EFO05775.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
          Length = 352

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 104/226 (46%), Gaps = 10/226 (4%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101
           V+ I   +L Y+G +   G E   +   S+++  +   LL+GY++  +  +++ +++RI 
Sbjct: 128 VLLIGACYL-YLGKSGVPGDEVFSLTQSSILLAWLFPMLLVGYVTTMLSSDIYHAFSRIK 186

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
             ++ D L+ L N  AF       +          S++  D D  K +ND +GH  G+ +
Sbjct: 187 TTAQTDELTNLYNRRAFMDLFEKQLQQARRRESTFSLLLGDCDNLKIVNDKYGHEAGNLL 246

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++D             R GG+EF      ++ + A ++   ++  +  S  N   G 
Sbjct: 247 LQAIADNFRHCLRGCDSAARYGGDEFTILLPNTNVEAAELVTKRIKDTLVASSFNY-RGN 305

Query: 215 SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +I   IS GIA    H +    ++  ADQA+Y  K+  +N+V   S
Sbjct: 306 AITTNISVGIATYPEHGDTAEALLRHADQAMYANKRESKNQVTATS 351


>gi|172038490|ref|YP_001804991.1| hypothetical protein cce_3577 [Cyanothece sp. ATCC 51142]
 gi|171699944|gb|ACB52925.1| hypothetical protein cce_3577 [Cyanothece sp. ATCC 51142]
          Length = 290

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 107/237 (45%), Gaps = 20/237 (8%)

Query: 32  SIFFSIFIATVIFIAN-----IFLFYIGLTPFYGLEYILVEN--LSLVIISITISLLLGY 84
           SIF+   IA V +  N     IF F   L   +  E  +++N  L L   + T+ L    
Sbjct: 45  SIFYLFPIAVVTWYGNRKIGLIFSFLCSLCWLWA-EINMIDNSQLWLEPWNATVRLSFFI 103

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           I   +L EL  +Y R  +L+R D L+G +N   F       I  L  YN   ++ +FD+D
Sbjct: 104 IVTYLLSELKAAYEREKKLARTDSLTGAVNRRFFRELLREEIDRLARYNHPFTLAYFDVD 163

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND  GH  GD ++  ++  + +       + RLGG+EFA   L    Q+A ++ +
Sbjct: 164 NFKMVNDQSGHSKGDYLLNKITTTIELNIRQTDILARLGGDEFALILLEIDYQKANLVLH 223

Query: 198 DLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRN 253
                I+   + ++    + I+ S G I      + +   I   D  +Y  K  G+N
Sbjct: 224 R----IQEQLLLMAEVEKMPISFSIGAITYYIIPQSVDHAIEEVDHLMYDIKHHGKN 276


>gi|218230897|ref|YP_002365424.1| sensory box/GGDEF family protein [Bacillus cereus B4264]
 gi|218158854|gb|ACK58846.1| sensory box/GGDEF family protein [Bacillus cereus B4264]
          Length = 567

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 88/172 (51%), Gaps = 6/172 (3%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHP 149
           L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  GH 
Sbjct: 135 LRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLGHM 194

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD +++ ++ +L  V G    + RLGG+EF        + + + LA  +    +     
Sbjct: 195 IGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQAP--F 252

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 253 MLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304


>gi|241204066|ref|YP_002975162.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857956|gb|ACS55623.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 709

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 100/203 (49%), Gaps = 32/203 (15%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRI----DCLSGLLNHSAFI----- 119
           LSL +I +   LL+G      L++L       +Q +R     D LSGLLN    +     
Sbjct: 265 LSLFLIGV---LLVGASEARRLRQL-------AQTARFEASHDSLSGLLNRQGLLRLLED 314

Query: 120 -SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
             S    + +L +V  D+D FK +ND +GH VGD +I  +S+ L+      +   RLGG+
Sbjct: 315 LESPDPSSPRLYLV--DLDGFKAVNDAWGHAVGDDLIRIVSNALMTSHPEVLAAARLGGD 372

Query: 179 EFAAAALGSS---EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           EFA   +GS+   E E AILA       E  +I+   G +I +  S G A R        
Sbjct: 373 EFALVHVGSTAREEIEEAILA----LFAEPFKID---GRTIEVGASIGAAARDGDISPLE 425

Query: 236 IIYRADQALYVAKKSGRNRVVCF 258
           ++ RAD ALY AK +G+ + V +
Sbjct: 426 LLRRADMALYRAKANGKGQAVEY 448


>gi|70727144|ref|YP_254060.1| hypothetical protein SH2145 [Staphylococcus haemolyticus JCSC1435]
 gi|123659602|sp|Q4L4H1|Y2145_STAHJ RecName: Full=Uncharacterized membrane protein SH2145
 gi|68447870|dbj|BAE05454.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 356

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 6/164 (3%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            Y+ ++ L  +      LNH + I+     NE L+++  DID FK +ND + H  GD V+
Sbjct: 189 KYDYLTGLGNVKEFDRHLNHVSQIAE--DKNESLALLLIDIDGFKDVNDTYSHKSGDAVL 246

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +S  L         + R GGEEF+      S  ++  LA ++R  +E S  ++ +   
Sbjct: 247 KQMSQLLKNYVPKQFQIFRNGGEEFSVVIRNYSLDQSVKLAENIRTGVEKSSFHLPNKEV 306

Query: 216 IHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           I +++S G+   ++  HK     +   AD  ++VAK  GRN+V+
Sbjct: 307 IKLSVSIGVGYLSQDDHKSQ-RKVFKDADDMVHVAKNEGRNQVM 349


>gi|319777826|ref|YP_004134256.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171545|gb|ADV15082.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 417

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 65/176 (36%), Positives = 98/176 (55%), Gaps = 12/176 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLS---IVFFDIDYFKQIND 144
           EL  + +R+  L+R D L+G+ N      +L    GS    L+   ++  DID FK++ND
Sbjct: 224 ELAKANDRLVLLARTDPLTGISNRRWMTETLERLWGSDKRCLAGAAMLMCDIDNFKKLND 283

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           + GH  GD+ +  ++  L   V      V R GGEEF     G +E+EAA +A  +RK +
Sbjct: 284 HLGHAEGDRCLVRVATILKENVRRDRDHVARYGGEEFLVLLPGVNEEEAAAVAERMRKSV 343

Query: 204 ENSQI-NISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256
           E + + N  S  S  +T+S G+A +   E IS   +  RAD ALY+AK++GRNRV+
Sbjct: 344 EAAALPNPGSRVSRWVTLSIGVAVQT-SEAISPEQLQQRADAALYLAKQTGRNRVL 398


>gi|313672987|ref|YP_004051098.1| response regulator receiver modulated diguanylate cyclase
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939743|gb|ADR18935.1| response regulator receiver modulated diguanylate cyclase
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 304

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 95/194 (48%), Gaps = 26/194 (13%)

Query: 85  ISGSILK-------ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------- 128
           I G+ILK       EL    + +  L+ ID L+G+ N       L  Y EK         
Sbjct: 111 IIGAILKARVATHIELKKQRDYLENLTMIDGLTGIANKR----RLNEYLEKWYKISLRKK 166

Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAAL 185
             LSI   DIDYFK  ND +GH  GD  + F++  +      P   V R GGEEFA    
Sbjct: 167 LNLSIFMIDIDYFKLYNDTYGHLAGDDCLKFIAGAIKNSLKRPYDLVARFGGEEFACVIP 226

Query: 186 GSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQ 242
            +S  +A ++A  ++  I N ++ + +S  S ++T+S G       E      ++ RAD+
Sbjct: 227 ETSYDDALMIAGRIKSNISNLRLEHKASTISSYVTVSIGGISGIPTELDGHFKMLERADE 286

Query: 243 ALYVAKKSGRNRVV 256
           +LY AK+ GR+++V
Sbjct: 287 SLYKAKQLGRDQIV 300


>gi|257091854|ref|YP_003165495.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257044378|gb|ACV33566.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 597

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 8/172 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           EL    +R S L R D L+G LN      + G    +       L +   DID FK++ND
Sbjct: 425 ELQAELDRASTLVRHDQLTGALNRRGLEEAFGKETARSRRRQSCLCVALLDIDNFKKLND 484

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH  GD  +  L+  +         + R GGEEF      +S ++A      L++ + 
Sbjct: 485 SLGHDAGDAALIHLATVIRETMRPQDTIARYGGEEFIILLPDTSIEDAQTAIVRLQREL- 543

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +I + +     IT SAG+ +   ++   ++  RAD+A+Y AK++G+NRV+
Sbjct: 544 TRRIFLHNNDRQLITFSAGVTDFRAEDTQLSVTKRADEAMYAAKQAGKNRVL 595


>gi|253701669|ref|YP_003022858.1| diguanylate cyclase [Geobacter sp. M21]
 gi|251776519|gb|ACT19100.1| diguanylate cyclase [Geobacter sp. M21]
          Length = 356

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 9/168 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           + R   L+  D L+GL NH  F       +     Y++  SI+  D+D FK  ND+FGH 
Sbjct: 178 HKRTKLLAITDSLTGLHNHRYFKQYFRQEMGRAKRYHKPFSIIMMDVDDFKSYNDSFGHA 237

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+++AF+ + ++          R GGEEF      +   +A + A  LR+ ++    N
Sbjct: 238 TGDRLLAFMGEIILQTIRGVDVAFRYGGEEFIVLLPETKLDKAILAAERLRESVQAGTAN 297

Query: 210 IS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
               G    +T+S G+A    + + +  +    D  LY+AK+ G+N+V
Sbjct: 298 RPVDGSGRGVTVSIGVASYPDNADKMDELFNIVDSLLYLAKRCGKNKV 345


>gi|148981346|ref|ZP_01816374.1| putative regulatory components of sensory transduction system
           [Vibrionales bacterium SWAT-3]
 gi|145960904|gb|EDK26233.1| putative regulatory components of sensory transduction system
           [Vibrionales bacterium SWAT-3]
          Length = 337

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 85/171 (49%), Gaps = 23/171 (13%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q +  D L+ L N     + L       G  N  ++++  D+D+FK  NDN+GH  GD
Sbjct: 161 LQQQANEDGLTKLYNRRYMDTKLEESIAWHGRRNISMTVILLDVDFFKPYNDNYGHIQGD 220

Query: 153 KVIAFLSDQLVVVF-GTPMFVGRLGGEEF----AAAALGSSEQEAAILAN---DLRKIIE 204
           K +  L++ L V+F     FVGR GGEEF    +     ++EQ+A  +     D+    E
Sbjct: 221 KCLQGLANTLKVLFVRAGEFVGRYGGEEFVLILSDTDSDAAEQQAIRIKEALYDMNYAHE 280

Query: 205 NSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRN 253
            S I      S  +T S G+        E +++I  + DQALY AK+SGRN
Sbjct: 281 YSAI------SDRVTASQGVLSFVPNGDESLASIYEKVDQALYQAKQSGRN 325


>gi|167035659|ref|YP_001670890.1| diguanylate cyclase [Pseudomonas putida GB-1]
 gi|166862147|gb|ABZ00555.1| diguanylate cyclase [Pseudomonas putida GB-1]
          Length = 423

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 84/158 (53%), Gaps = 16/158 (10%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N + F       + +     + L+++F D D+FKQIND  GH VGD+V+  ++
Sbjct: 251 DSLTGLPNRAFFEGRLSRSVRNAARQQDHLALLFLDSDHFKQINDTLGHAVGDEVLISVA 310

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQ--INISSGPSI 216
           D++         V RLGG+EFA       S ++A  +A    KI+ + +  + + SG SI
Sbjct: 311 DRVRAQLREHDLVARLGGDEFAVLLTPLQSRKDAEHIAE---KIVASMKLPVQLDSGRSI 367

Query: 217 HITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGR 252
             ++S GIA       +P S ++  AD A+Y AK+  R
Sbjct: 368 ATSLSVGIAYYPDDGADPAS-LLNAADAAMYQAKRKRR 404


>gi|148251791|ref|YP_001236376.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1]
 gi|146403964|gb|ABQ32470.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1]
          Length = 565

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 94/183 (51%), Gaps = 14/183 (7%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
           G   +EL  + +R++ ++ ID LSGL N   F + +            +LS++  D+D+F
Sbjct: 368 GQRERELIAANDRLTVMASIDMLSGLANRRGFQNHIDVEWARALQTGAELSLLMIDVDHF 427

Query: 140 KQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           K  ND +GHP GD  ++ L + L  +   T  F GR GGEEF     G   ++A  +   
Sbjct: 428 KLYNDTYGHPEGDACLSRLGETLAQIAQATDAFAGRYGGEEFCLLIPGIDARQAFEIGEQ 487

Query: 199 LRKIIENSQINISSGPSIH--ITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNR 254
           +R  +   ++N+    S +  +T+S G+A     + ++T  +I  AD ALY AK  GRN 
Sbjct: 488 IRYAV--LELNLPHATSAYRCVTVSVGVASARPNDALATTDLIEAADAALYAAKHHGRNT 545

Query: 255 VVC 257
           V+ 
Sbjct: 546 VIA 548


>gi|258591906|emb|CBE68211.1| response regulator PleD (with diguanylate cyclase and response
           regulator receiver domains) (fragment) [NC10 bacterium
           'Dutch sediment']
          Length = 128

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 64/124 (51%), Gaps = 1/124 (0%)

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D FK+IND +GH  GD V+A  S  L +   +   + R GGEEF      +    A
Sbjct: 1   MIDVDRFKEINDRYGHVAGDAVLASTSQCLQLQVRSYDRLYRYGGEEFLLCMPNTGIDAA 60

Query: 193 AILANDLRKIIENSQINI-SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
             +A  LR  +   QI    S P + IT S GIA    + P+   I R D+A+Y AK +G
Sbjct: 61  LEIAERLRIAVAAQQIRSGDSDPHLQITASFGIAALDGERPVEESIDRVDKAMYQAKTAG 120

Query: 252 RNRV 255
           RNRV
Sbjct: 121 RNRV 124


>gi|253575747|ref|ZP_04853082.1| diguanylate cyclase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844790|gb|EES72803.1| diguanylate cyclase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 664

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 13/165 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDK 153
           +  + +++  D L+GL        ++  + +K    S++  DID FKQ+ND +GH  GDK
Sbjct: 496 HAEVRRMANRDMLTGLYARHYVDDAIQEFQKKDTNGSLIIVDIDQFKQVNDTYGHQTGDK 555

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  +   +           R GGEE A    G+S       A +  +I E  ++ ++  
Sbjct: 556 ILKQVCAIVKSSIRKTDIAARWGGEELAVYLPGAS-------AENSYQIAETIRLRVAMD 608

Query: 214 PSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRV 255
               +T+S GIAE      K  + ++ Y AD ALY AK +GRN+ 
Sbjct: 609 TDPPVTVSCGIAEWVKGDEKLSVESLFYEADMALYKAKNNGRNQT 653


>gi|223983506|ref|ZP_03633691.1| hypothetical protein HOLDEFILI_00972 [Holdemania filiformis DSM
           12042]
 gi|223964501|gb|EEF68828.1| hypothetical protein HOLDEFILI_00972 [Holdemania filiformis DSM
           12042]
          Length = 683

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 22/176 (12%)

Query: 95  ISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           +  +++ QL++ID L+GL N +         +++    ++  +++ FDID+FK  ND FG
Sbjct: 505 VELDQLKQLAKIDSLTGLFNRAYAKRALDTILNNEADASQNYALLVFDIDFFKSANDEFG 564

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS- 206
           H  GD+V+A ++ ++           R+GG+EF                + L ++IE   
Sbjct: 565 HLFGDQVLANVAHRIQANVRKSDISARIGGDEFLIFME---------YKDHLEQMIERIF 615

Query: 207 QINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCFS 259
           Q    S     IT+S G+A  C  +      T+ + ADQALY AK+ GR +  C+ 
Sbjct: 616 QALNGSFQGYDITVSMGVA--CFPQDGLDYMTLFHHADQALYAAKRRGRRQYCCYE 669


>gi|182420193|ref|ZP_02951424.1| diguanylate cyclase [Clostridium butyricum 5521]
 gi|182375996|gb|EDT73586.1| diguanylate cyclase [Clostridium butyricum 5521]
          Length = 633

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 14/170 (8%)

Query: 94  FISYNRISQLSRIDCLSGLLN--HSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFG 147
            ISY +I +L   +   GL    +  + + L  +    +   SI+  DID FK +ND +G
Sbjct: 468 LISYTKIKKLRAQNQKDGLTKSYNRFYFNELYEHFIREDTNFSIMMIDIDNFKSLNDTYG 527

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  + + +  +      + R GGEEF   +   S QE   ++  +R  +E   
Sbjct: 528 HQFGDTVLINVCNTISKIIDKDSKLCRYGGEEFVVVSSNKSRQELEEISEKIRVEVE--- 584

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
             I    ++ +T+S G+A  C +KE    +   AD+ LY AK +G+N+VV
Sbjct: 585 -KIEFQENVKVTLSIGVAMSCDNKEDTLNV---ADKNLYTAKTTGKNKVV 630


>gi|330446056|ref|ZP_08309708.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490247|dbj|GAA04205.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 438

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 67/130 (51%), Gaps = 13/130 (10%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAAL 185
           S+VF DID+FKQ+ND  GH  GD V+   +  +           R GGEEF     A  L
Sbjct: 309 SMVFIDIDHFKQVNDLHGHRYGDNVLRRFASLINKRVRKSDVFARWGGEEFVIFCPATPL 368

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
           G+    AA  A  +R  IE ++ +      + IT S G+AE    E  +  I RAD+AL 
Sbjct: 369 GA----AAEFAESIRDCIEQAEWD----HDMKITCSMGVAE-LENEEYNHFIERADKALL 419

Query: 246 VAKKSGRNRV 255
            AK+ GRNRV
Sbjct: 420 KAKERGRNRV 429


>gi|295095124|emb|CBK84214.1| diguanylate cyclase (GGDEF) domain [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 513

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 10/156 (6%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+G  N  AF   +  L + ++   +   DID FK IND +GH  GD V+  ++ + +
Sbjct: 359 DALTGCKNRRAFDNDVDELLTAHQPFVLALIDIDNFKSINDTWGHLSGDIVLRNVAREGI 418

Query: 164 VVFGTPMFVG--RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
            +   P  V   R GGEEF           A  L    R  +E       +   + +T S
Sbjct: 419 QIM-QPHHVSVYRYGGEEFGVIFPAELMNSAHALLEAWRTAVEKRTWREEN---LRVTFS 474

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           AG+ E  H EP+   I   D+ALY AK+ G+NR+V 
Sbjct: 475 AGMGE-WHFEPLEQFIGSVDEALYTAKQQGKNRIVS 509


>gi|291538351|emb|CBL11462.1| diguanylate cyclase (GGDEF) domain [Roseburia intestinalis XB6B4]
          Length = 1046

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 92/191 (48%), Gaps = 33/191 (17%)

Query: 86  SGSILKELFISYN---------RISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIV 132
           +G ILK +  SY+         ++S+  R D L+ L N  A        L  Y E   ++
Sbjct: 238 NGKILKIIGRSYDISSDRKIQEQLSEEMRRDPLTHLYNKVATGEEAERILKEYPEGTHVL 297

Query: 133 FF-DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA----AALGS 187
           F  DID FK IND FGH VGD VI+ ++  L   F     VGR+GG+EF        L  
Sbjct: 298 FLIDIDNFKSINDTFGHTVGDTVISDIASALEEQFPDHKLVGRVGGDEFLVLMDNTTLKQ 357

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQ 242
           +EQ+A  L     K +      +     IH+T+S G+A       C+ E    +  +AD+
Sbjct: 358 AEQKAKELCRHGEKKL------VGDDAVIHVTMSVGLAVSGQDGNCYTE----LFDQADR 407

Query: 243 ALYVAKKSGRN 253
           A+Y  K+SG++
Sbjct: 408 AMYAIKRSGKS 418



 Score = 36.6 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  L   D L+GL N  AF   L +         E  ++V  DID F  +N+N+G   GD
Sbjct: 620 IRHLQDRDQLTGLYNLEAFKYRLKNILAEAKQGQEHYALVHIDIDKFSYVNENYGQQTGD 679

Query: 153 KVI 155
            ++
Sbjct: 680 AIL 682


>gi|291535855|emb|CBL08967.1| diguanylate cyclase (GGDEF) domain [Roseburia intestinalis M50/1]
          Length = 1046

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 92/191 (48%), Gaps = 33/191 (17%)

Query: 86  SGSILKELFISYN---------RISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIV 132
           +G ILK +  SY+         ++S+  R D L+ L N  A        L  Y E   ++
Sbjct: 238 NGKILKIIGRSYDISSDRKIQEQLSEEMRRDPLTHLYNKVATGEEAERILKEYPEGTHVL 297

Query: 133 FF-DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA----AALGS 187
           F  DID FK IND FGH VGD VI+ ++  L   F     VGR+GG+EF        L  
Sbjct: 298 FLIDIDNFKSINDTFGHTVGDTVISDIASALEEQFPDHKLVGRVGGDEFLVLMDNTTLKQ 357

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQ 242
           +EQ+A  L     K +      +     IH+T+S G+A       C+ E    +  +AD+
Sbjct: 358 AEQKAKELCRHGEKKL------VGDDAVIHVTMSVGLAVSGQDGNCYTE----LFDQADR 407

Query: 243 ALYVAKKSGRN 253
           A+Y  K+SG++
Sbjct: 408 AMYAIKRSGKS 418



 Score = 36.6 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  L   D L+GL N  AF   L +         E  ++V  DID F  +N+N+G   GD
Sbjct: 620 IRHLQDRDQLTGLYNLEAFKYRLKNILAEAKQGQEHYALVHIDIDKFSYVNENYGQQTGD 679

Query: 153 KVI 155
            ++
Sbjct: 680 AIL 682


>gi|260778484|ref|ZP_05887376.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604648|gb|EEX30943.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 361

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 68/138 (49%), Gaps = 14/138 (10%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           K S+   DID FK++ND +GH +GD V+   + QL        F+ R GGEEF       
Sbjct: 213 KGSLAVIDIDNFKRVNDVYGHQIGDDVLKKTAQQLQACLSERDFIARFGGEEFVVWLPER 272

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE---------RCHKEPISTIIY 238
           +E E   L  +L +    ++I +   P   +T+S G+ E            K  +  II 
Sbjct: 273 TELERRQLIEELHQ--SANEILLDGEP---VTVSIGVCEFDFGNESEIDNKKGALDQIIL 327

Query: 239 RADQALYVAKKSGRNRVV 256
            AD+ALY AK  GRNRVV
Sbjct: 328 VADEALYQAKNQGRNRVV 345


>gi|229522898|ref|ZP_04412312.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           cholerae TM 11079-80]
 gi|229340115|gb|EEO05123.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           cholerae TM 11079-80]
          Length = 359

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 77/164 (46%), Gaps = 19/164 (11%)

Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+G LN       L          NE   I   DID+FK +ND +GH  GDKVI
Sbjct: 178 LSTRDALTGTLNRHQLDGFLKKCLRHRQLANESAVIAVIDIDHFKSVNDLYGHDTGDKVI 237

Query: 156 AFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
                Q+V +  T       + RLGG+EF      +S  +A ++ + +   I+ +     
Sbjct: 238 T----QVVEIMNTHCRELDLLFRLGGDEFLLLFENTSLTDATLVMSHIGCRIQQTHYPYH 293

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +     +T+S G+AE    +       R DQALY +KK G+NRV
Sbjct: 294 AK----VTVSVGLAEALRTDDPEQWFKRTDQALYHSKKMGKNRV 333


>gi|240145958|ref|ZP_04744559.1| putative cyclic diguanylate phosphodiesterase domain protein
           [Roseburia intestinalis L1-82]
 gi|257201945|gb|EEV00230.1| putative cyclic diguanylate phosphodiesterase domain protein
           [Roseburia intestinalis L1-82]
          Length = 1046

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 92/191 (48%), Gaps = 33/191 (17%)

Query: 86  SGSILKELFISYN---------RISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIV 132
           +G ILK +  SY+         ++S+  R D L+ L N  A        L  Y E   ++
Sbjct: 238 NGKILKIIGRSYDISSDRKIQEQLSEEMRRDPLTHLYNKVATGEEAERILKEYPEGTHVL 297

Query: 133 FF-DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA----AALGS 187
           F  DID FK IND FGH VGD VI+ ++  L   F     VGR+GG+EF        L  
Sbjct: 298 FLIDIDNFKSINDTFGHTVGDTVISDIASALEEQFPDHKLVGRVGGDEFLVLMDNTTLKQ 357

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQ 242
           +EQ+A  L     K +      +     IH+T+S G+A       C+ E    +  +AD+
Sbjct: 358 AEQKAKELCRHGEKKL------VGDDAVIHVTMSVGLAVSGQDGNCYTE----LFDQADR 407

Query: 243 ALYVAKKSGRN 253
           A+Y  K+SG++
Sbjct: 408 AMYAIKRSGKS 418



 Score = 36.6 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  L   D L+GL N  AF   L +         E  ++V  DID F  +N+N+G   GD
Sbjct: 620 IRHLQDRDQLTGLYNLEAFKYRLKNILAEAKQGQEHYALVHIDIDKFSYVNENYGQQTGD 679

Query: 153 KVI 155
            ++
Sbjct: 680 AIL 682


>gi|224824140|ref|ZP_03697248.1| diguanylate cyclase [Lutiella nitroferrum 2002]
 gi|224603559|gb|EEG09734.1| diguanylate cyclase [Lutiella nitroferrum 2002]
          Length = 574

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 26/182 (14%)

Query: 91  KELFISYNRISQ-------LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136
           KEL     ++SQ       L+  D L+GL N   F       I ++    ++L+++F D+
Sbjct: 389 KELKSHMEKMSQNQQELRHLAHHDSLTGLPNRMQFFHQIECAIDAVAESGQQLAVLFIDL 448

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS--SEQEAAI 194
           D+FKQIND  GH VGD+V+  ++ +L         V RLGG+EF     G   + +  AI
Sbjct: 449 DHFKQINDQMGHAVGDQVLIVVAQRLRSALRGEDVVARLGGDEFIVLIKGPAIAAEVPAI 508

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKS 250
            A  L  + E+    ++ G  + +  S GI+    +    E    ++ RAD A+Y AK S
Sbjct: 509 AAKILSTLNEDI---MTHGHRLQVCASIGISLFPDDGVTAE---ELVLRADSAMYKAKVS 562

Query: 251 GR 252
           GR
Sbjct: 563 GR 564


>gi|119472717|ref|ZP_01614682.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Alteromonadales bacterium TW-7]
 gi|119444793|gb|EAW26096.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Alteromonadales bacterium TW-7]
          Length = 462

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 83/166 (50%), Gaps = 12/166 (7%)

Query: 101 SQLSRI---DCLSGLLNHSAFISSL-----GSYNEKLSIVF--FDIDYFKQINDNFGHPV 150
           SQL +I   D L+G+ N   F   +     GS      I F  FD+D FK +ND +GH V
Sbjct: 290 SQLEKIAFFDPLTGIPNRRFFSDQVNKLVKGSVRRGGIIAFGLFDVDNFKAVNDTYGHDV 349

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  L++ L  +        R GGEEFA A +     +A  +A  L   I + ++ +
Sbjct: 350 GDRVLVELANILTHILRIDDVFCRFGGEEFAFAVILKEVDDAEPVAEKLINAIRDLKVPV 409

Query: 211 SSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNR 254
               +I++T+S G  +    +   I   I  +D A+Y  KKSG++R
Sbjct: 410 EGENTINVTVSMGLNVVSPSNSTDIDDHIKISDSAMYQVKKSGKDR 455


>gi|78046954|ref|YP_363129.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78035384|emb|CAJ23029.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 569

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      SL             LS++  D+D+FKQ ND+ GH  GD ++A + 
Sbjct: 402 DALTGLYNRRYLEESLSHELARCARRGLPLSVLMLDVDHFKQFNDSQGHAGGDLLLAAVG 461

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L+          R GGEEF      +  +EA  +A  +R  I    ++  +     +T
Sbjct: 462 ELLLTRLRAEDVACRYGGEEFTVLLPEADGEEAMRVAEQIRSYIAALAVSDGARALPKVT 521

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+A      E  +++I +AD ALY AK +GRNRV
Sbjct: 522 ASIGVASFPADGEQGASLIQKADAALYRAKHAGRNRV 558


>gi|228937866|ref|ZP_04100494.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228970747|ref|ZP_04131387.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228977322|ref|ZP_04137717.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407]
 gi|228782299|gb|EEM30482.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407]
 gi|228788872|gb|EEM36811.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228821772|gb|EEM67772.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 569

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 88/172 (51%), Gaps = 6/172 (3%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHP 149
           L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  GH 
Sbjct: 137 LRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLGHM 196

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD +++ ++ +L  V G    + RLGG+EF        + + + LA  +    +     
Sbjct: 197 IGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQAP--F 254

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 255 MLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306


>gi|152965576|ref|YP_001361360.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216]
 gi|151360093|gb|ABS03096.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216]
          Length = 509

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 9/158 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           + + + +D L+G+ N       L   + E L++   D+D+FK +ND FGH  GD+V+  +
Sbjct: 343 LRRAATLDGLTGVANRRTLDEVLARVDGEALAVALLDVDHFKAVNDRFGHQTGDEVLRAV 402

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +   V        V R GGEEFA    G+   EA +       ++E  +  ++ G +  +
Sbjct: 403 AAAAVSAVREGDLVARYGGEEFAVLMPGTGTAEAQV-------VVERLRAAVAGGTTPRV 455

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T S GIA     +  + ++  AD+ALY AK +GR+R V
Sbjct: 456 TCSVGIAGGAAGD-PAALLAEADRALYAAKAAGRDRSV 492


>gi|149909554|ref|ZP_01898208.1| methyl-accepting chemotaxis protein-like protein [Moritella sp.
           PE36]
 gi|149807459|gb|EDM67410.1| methyl-accepting chemotaxis protein-like protein [Moritella sp.
           PE36]
          Length = 365

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 99/204 (48%), Gaps = 26/204 (12%)

Query: 72  VIISITISLLLGYISGSILKELFISY--NRISQLSRIDCLS-------------GLLNHS 116
            ++S +  LLLG++       + I+Y  +++S+LS  D L+              LLNH+
Sbjct: 170 AVLSTSGVLLLGFLIFIFTIIVIINYFVHQLSELSIRDSLTNLYTKRFLKEISPALLNHN 229

Query: 117 AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                    +  L+ +F D+D+FK IND  GH  GDKV+  ++  +        +  R G
Sbjct: 230 KLT------DHHLTAIFIDLDHFKSINDLHGHDNGDKVLKKVAKIMRENAKQRHYCMRYG 283

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERCH--KEPI 233
           GEEF       +E  A  +A  +R  +  S++  I+      +T+SAG+A   +   +  
Sbjct: 284 GEEFVLIGFFENEMSAVDMAETIRHQV--SEVCFINDNNEFSVTLSAGVALHNNLIDDSF 341

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
           +  + RAD  LY AK +GRNRVV 
Sbjct: 342 ANTVKRADMKLYEAKTAGRNRVVV 365


>gi|189425690|ref|YP_001952867.1| diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ]
 gi|189421949|gb|ACD96347.1| diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ]
          Length = 768

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 108/237 (45%), Gaps = 16/237 (6%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
           Y    +  +   V     + L Y  +T     +++L + + +     ++  L G I    
Sbjct: 375 YRDQLWEAWQQAVRDRQPVRLEYRIMTADNKEKWVLEQGVPVFDTEGSVQALEGIIVD-- 432

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           + EL     +I  L+  D L+ L N + F       + S    + KL++ F D+D FK I
Sbjct: 433 ISELKQIEAQIQHLASYDNLTSLPNRALFSDRIDRALLSAQRNSSKLALFFIDLDQFKPI 492

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRK 201
           ND  GH  GD ++   + ++         V R+GG+EFA      ++ Q+A  +A  +R 
Sbjct: 493 NDELGHDTGDWLLQAAAQRMAESVRESDTVARIGGDEFAVLLQNIATAQDARTVAEKIRT 552

Query: 202 IIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + N      SG ++HI+ S G+A   E    +    ++  AD+A+Y AKK GRN V
Sbjct: 553 TL-NRPFITPSGVTLHISCSIGVALYPEDGDNQ--RDLLRAADEAMYRAKKRGRNAV 606


>gi|118590336|ref|ZP_01547739.1| putative sensory box/GGDEF family protein [Stappia aggregata IAM
           12614]
 gi|118437308|gb|EAV43946.1| putative sensory box/GGDEF family protein [Stappia aggregata IAM
           12614]
          Length = 773

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 96/191 (50%), Gaps = 30/191 (15%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----------IVFFDID 137
           S+  E   +  +I  L+  D L+GL N   F + L    EK+S          +VF D+D
Sbjct: 322 SVAVERDRAERKIRYLANHDVLTGLPNRQEFKTKL---EEKVSESDRTGAPVAVVFVDLD 378

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--- 194
            FK +ND+FGH +GD+V+  ++++++ V        R GG+EF     G + Q++A+   
Sbjct: 379 NFKFVNDSFGHGIGDQVLMIVAERIMSVHNGAHQAIRFGGDEFVLIVDGETAQKSALNEF 438

Query: 195 ---LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAK 248
              L N++ K I+   +      S H+T S G A  C+ +   +   ++  AD+A++ AK
Sbjct: 439 MARLRNEITKTIQIDDL------SFHVTCSIGAA--CYPQDADSAAQLLRNADKAMFDAK 490

Query: 249 KSGRNRVVCFS 259
            +GR+    F 
Sbjct: 491 SAGRDSYKVFE 501


>gi|75907253|ref|YP_321549.1| response regulator receiver modulated diguanylate cyclase [Anabaena
           variabilis ATCC 29413]
 gi|75700978|gb|ABA20654.1| response regulator receiver modulated diguanylate cyclase [Anabaena
           variabilis ATCC 29413]
          Length = 330

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 89/182 (48%), Gaps = 12/182 (6%)

Query: 85  ISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136
           I  S L++   + NR + +L  ID L+ + N   F        ++       LS++  D+
Sbjct: 127 IQQSHLQQKLEAANRELQRLVTIDELTQVANRRRFEEYCAQEWQRMARDQLPLSLILCDV 186

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAIL 195
           D+FK  ND +GH  GD+ +  ++  +      P   V R GGEEFA     +  + A  L
Sbjct: 187 DFFKAYNDTYGHRAGDRCLQLVAKAIENCVNRPADVVARYGGEEFAVILPRTYPEGAIHL 246

Query: 196 ANDLRKIIENSQI-NISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGR 252
           AN +   +   QI +++S  +  +TISAG+A            II  AD+ALY AK +GR
Sbjct: 247 ANAICSAVRELQIPHLTSQANTCVTISAGVATEIPVPNSDFQEIIDAADRALYQAKMAGR 306

Query: 253 NR 254
           +R
Sbjct: 307 DR 308


>gi|296445025|ref|ZP_06886986.1| diguanylate cyclase [Methylosinus trichosporium OB3b]
 gi|296257446|gb|EFH04512.1| diguanylate cyclase [Methylosinus trichosporium OB3b]
          Length = 397

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 21/179 (11%)

Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           + L+R D L+GL N           +++LG+ +  L+I   D+D FK +ND  GH VGD 
Sbjct: 222 AALARRDALTGLANRVHLRERFEDSVAALGAEDGALAIHCLDLDRFKAVNDLHGHLVGDA 281

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKI------IENS 206
           ++   +++LV    +     RLGG+EF     G   E EA +LA+ + ++      I+  
Sbjct: 282 LLRMATERLVGTLRSEDTAARLGGDEFVIVQTGIRHEDEARLLAHRIIRVLSAPYEIDGR 341

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           +I I +   + +    G+A       +  +  RAD ALY AK+  R  V    D   ++
Sbjct: 342 EIRIGASIGVALAPRDGLA-------LEILCERADAALYRAKRDNRGGVALCGDAPPSS 393


>gi|228919483|ref|ZP_04082847.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228840126|gb|EEM85403.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 569

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 88/172 (51%), Gaps = 6/172 (3%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHP 149
           L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  GH 
Sbjct: 137 LRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLGHM 196

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD +++ ++ +L  V G    + RLGG+EF        + + + LA  +    +     
Sbjct: 197 IGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQAP--F 254

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 255 MLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306


>gi|228957047|ref|ZP_04118822.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229042486|ref|ZP_04190231.1| Sensory box/GGDEF [Bacillus cereus AH676]
 gi|229108234|ref|ZP_04237856.1| Sensory box/GGDEF [Bacillus cereus Rock1-15]
 gi|229126059|ref|ZP_04255081.1| Sensory box/GGDEF [Bacillus cereus BDRD-Cer4]
 gi|229143352|ref|ZP_04271783.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24]
 gi|229148966|ref|ZP_04277211.1| Sensory box/GGDEF [Bacillus cereus m1550]
 gi|228634506|gb|EEK91090.1| Sensory box/GGDEF [Bacillus cereus m1550]
 gi|228640159|gb|EEK96558.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24]
 gi|228657381|gb|EEL13197.1| Sensory box/GGDEF [Bacillus cereus BDRD-Cer4]
 gi|228675250|gb|EEL30472.1| Sensory box/GGDEF [Bacillus cereus Rock1-15]
 gi|228726839|gb|EEL78051.1| Sensory box/GGDEF [Bacillus cereus AH676]
 gi|228802678|gb|EEM49520.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 569

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 88/172 (51%), Gaps = 6/172 (3%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHP 149
           L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  GH 
Sbjct: 137 LRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLGHM 196

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD +++ ++ +L  V G    + RLGG+EF        + + + LA  +    +     
Sbjct: 197 IGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQAP--F 254

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 255 MLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306


>gi|146313336|ref|YP_001178410.1| diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638]
 gi|145320212|gb|ABP62359.1| diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638]
          Length = 692

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 100/197 (50%), Gaps = 15/197 (7%)

Query: 69  LSLVIISITISLLLGYISG--SILKELFISYNR-ISQLSRIDCLSGLLNH-------SAF 118
           LS++ I++ +S+L   +    ++L       NR ++QL+  D L+ L N        S  
Sbjct: 223 LSILAITLLVSMLDARLQARTTLLASSLAEANRELAQLALHDTLTRLPNRILLEDRLSQA 282

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           I+         +++F D+D FK +ND +GH  GDK++  ++ +L++       + R+GG+
Sbjct: 283 INKADREGTHFALMFMDLDGFKAVNDAYGHVTGDKLLVAVTKRLLLPLKGQYTLARIGGD 342

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHK-EPISTI 236
           EF      S   +AA LAN L + I++     S  P  + +T+S GIA   H  +    +
Sbjct: 343 EFVLLVEVSGPDDAASLANALVRAIDSP---FSVDPYELVVTVSIGIALYPHDGKTDREM 399

Query: 237 IYRADQALYVAKKSGRN 253
           ++ AD A+Y  K  GRN
Sbjct: 400 MFNADAAMYHTKHVGRN 416


>gi|104782021|ref|YP_608519.1| diguanylate cyclase/phosphodiesterase [Pseudomonas entomophila L48]
 gi|95111008|emb|CAK15728.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) [Pseudomonas entomophila L48]
          Length = 744

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 9/168 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFG 147
           +EL     ++ +L+  D ++GL N   F   L      +  L+++  DID FKQ+ND+ G
Sbjct: 305 RELRQYQAQLERLAHYDTITGLPNRVLFQQQLTEAILRDHGLAVLMLDIDGFKQVNDSLG 364

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           HP+GD ++   + + +    +   V RLGG+EF     G+  Q    + + +R ++   Q
Sbjct: 365 HPMGDLLLQQATARFLQELHSQDRVCRLGGDEFVFMLQGAQGQ----VQHQIRALLRCLQ 420

Query: 208 INIS-SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
                +G +  +T S G+A    H E   +++  AD A+Y AK+SGRN
Sbjct: 421 RPFDLNGNATLVTGSIGLAWSPQHGEDADSLLRHADTAMYAAKESGRN 468


>gi|90020710|ref|YP_526537.1| hypothetical protein Sde_1063 [Saccharophagus degradans 2-40]
 gi|89950310|gb|ABD80325.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 451

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 97/218 (44%), Gaps = 28/218 (12%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSI-------------LKELFISYNR-------IS 101
           E++  E++ L +I I +++L+      I             L EL  +Y +       I 
Sbjct: 217 EWVSAESMYLTLILIWMTILIWEGLSRIYWLQQKAKKEERRLSELLNNYQQLESEKREIE 276

Query: 102 QLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            LS  D L+  LN S     +       S   ++++   DID+FK IND FGH VGD  +
Sbjct: 277 NLSNRDTLTQALNRSGLSQKVETIFNSESPAPQVAVFVIDIDFFKSINDTFGHDVGDTTL 336

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             + + +     +   +GR GGEEF      +  + A  +AN LRK I  +  N      
Sbjct: 337 QKVVNIIQTNMRSEDILGRWGGEEFVLITRVTDLKTALHVANKLRKCI--AVHNFEFPDD 394

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             +TIS G+      +    +  RAD ALY AK +GRN
Sbjct: 395 RQLTISMGLTMSEIGDRFEDVFKRADVALYKAKHTGRN 432


>gi|89092313|ref|ZP_01165267.1| sensory box protein [Oceanospirillum sp. MED92]
 gi|89083401|gb|EAR62619.1| sensory box protein [Oceanospirillum sp. MED92]
          Length = 677

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 18/191 (9%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEK 128
           +I++  L   IS     EL    N + Q++  D L+GL N  AF+ SL       S N++
Sbjct: 214 TISVDQLQQEISKRT-SELEQQKNSLRQIAEHDSLTGLANREAFLKSLNEVIIHCSTNKR 272

Query: 129 LSIVFF-DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AAL 185
            + VFF D+D FKQIND+ GH  GD V+  ++ +          + R+GG+EF      L
Sbjct: 273 RAAVFFIDLDKFKQINDSMGHSAGDAVLIEMAHRFTSTLRKSDSLARIGGDEFTVIIDPL 332

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQ 242
             S ++AA LA  L   +E  +       ++++  S GIA   + E  +T   ++  AD 
Sbjct: 333 YES-KDAAELAKKLIASLE--EPYEYEDQTLYLNTSIGIA--VYPEDGTTPQELMKNADS 387

Query: 243 ALYVAKKSGRN 253
           A+Y AKK+G N
Sbjct: 388 AMYQAKKAGGN 398


>gi|322805533|emb|CBZ03098.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Clostridium botulinum H04402 065]
          Length = 419

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 15/180 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           E  I  ++  Q++  D L+ L N ++F+  L             L+I+F D+D FK++ND
Sbjct: 244 ERKIYNDKTKQMAYFDSLTELPNRNSFLKQLEHEIKLSKKKQSLLAIMFLDLDKFKEVND 303

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
           NFGH  GDK++  ++ ++     +   + R GG+EF       + E++   LA D+ ++ 
Sbjct: 304 NFGHCTGDKLLWQVAKRVKNTISSKDLIARFGGDEFTILIRNIAYEKQVEDLAMDIIEVF 363

Query: 204 ENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +   I I  G  ++I  S GI+   +  H      +I +AD+A+Y AKK G N+   + D
Sbjct: 364 KEP-ICI-EGIYVNIKTSIGISFFPKDGH--TSQELIKKADKAMYDAKKRGSNKFQIYKD 419


>gi|295699148|ref|YP_003607041.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Burkholderia sp. CCGE1002]
 gi|295438361|gb|ADG17530.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Burkholderia sp. CCGE1002]
          Length = 694

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 21/200 (10%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL- 122
           +L+  L L    +  + LLG +S            +I +L+ +D L+GL N +     + 
Sbjct: 227 VLIVTLMLSRFDVRTTFLLGAVSKL--------NGQIVRLATLDALTGLPNRATLTERIE 278

Query: 123 ----GSYNEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
               G+  ++ S  ++F D+D FK IND+ GH  GD V++  + +L     +   V RLG
Sbjct: 279 RAISGARRQRTSFAVLFMDLDGFKTINDSLGHSAGDAVLSAFAQRLQQCVRSSDTVARLG 338

Query: 177 GEEFAAAA--LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPI 233
           G+EF   A  L S +  AA+    L ++    Q   S    + +  S GIA      + +
Sbjct: 339 GDEFVVLAEHLTSGDDAAALADGVLERM---RQGTWSDEQPLQVMPSIGIALYPRDGDSV 395

Query: 234 STIIYRADQALYVAKKSGRN 253
            T++  AD A+Y AK++GR 
Sbjct: 396 ETLLQHADAAMYEAKRAGRG 415


>gi|238791756|ref|ZP_04635393.1| hypothetical protein yinte0001_14720 [Yersinia intermedia ATCC
           29909]
 gi|238728860|gb|EEQ20377.1| hypothetical protein yinte0001_14720 [Yersinia intermedia ATCC
           29909]
          Length = 572

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 13/176 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           +L  +  R+   +R D L+ L N  AF   L          N  L+++  DIDYFK  ND
Sbjct: 389 KLVKANRRLEIQARTDSLTKLPNRRAFKKVLAHEFMRAKRSNSPLAVLMIDIDYFKNFND 448

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  L          V R GGEEFAA    + ++ A+++A  + + I
Sbjct: 449 CYGHISGDACLRLVARALRKSLKRSTDIVARYGGEEFAAILPDTDQRGASLVAEHILQSI 508

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPIST-----IIYRADQALYVAKKSGRNR 254
               I  S      +TIS G+      + + T     ++  ADQALY +KK+GRN+
Sbjct: 509 RAMGIKHSDSKFRKVTISLGLTIYQANQHVGTTDQADLMLAADQALYYSKKNGRNQ 564


>gi|170693076|ref|ZP_02884237.1| diguanylate cyclase [Burkholderia graminis C4D1M]
 gi|170142074|gb|EDT10241.1| diguanylate cyclase [Burkholderia graminis C4D1M]
          Length = 524

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 14/192 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEK 128
           + +S LL +     L++   +   + +L+  D L+GL N     + L           + 
Sbjct: 323 VIVSWLLAFA----LRDKLRAQAALMRLAATDPLTGLSNRRVLDNRLDEEWRRARRTGQP 378

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187
           LS +F DID+FK+ ND +GH  GD  ++ +++ +       +  V R GGEEFA     +
Sbjct: 379 LSALFIDIDHFKRFNDTYGHASGDDALSAVAECISSTVRRAVDLVARYGGEEFAVILPDT 438

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALY 245
           S   AA +A  +R+ ++   I      S+ +T+S G A     +      ++  AD+ LY
Sbjct: 439 SADGAAAVAEKIRRNVQAQDILHGGDGSVAVTVSVGCATMVPAQGANALDLLAAADRQLY 498

Query: 246 VAKKSGRNRVVC 257
           +AK +GRNRV C
Sbjct: 499 LAKAAGRNRVSC 510


>gi|161521079|ref|YP_001584506.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia multivorans ATCC 17616]
 gi|189352743|ref|YP_001948370.1| PleD-related family two-component system response regulator
           [Burkholderia multivorans ATCC 17616]
 gi|160345129|gb|ABX18214.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia multivorans ATCC 17616]
 gi|189336765|dbj|BAG45834.1| PleD-related family two-component system response regulator
           [Burkholderia multivorans ATCC 17616]
          Length = 345

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 84/177 (47%), Gaps = 14/177 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+GL N       L +          +LS++  D+D+FK  N
Sbjct: 162 QQLLEANLELRRLMHSDGLTGLSNRRYLDEYLAAEWRRGTRERAELSLLMIDVDHFKLYN 221

Query: 144 DNFGHPVGDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           D +GH  GD+V   +A    Q +   G      R GGEEFA    G+S   A +L   +R
Sbjct: 222 DTYGHVAGDQVLRQVAATIAQCLRPSGD--LAARFGGEEFAVVMPGTSAGAARLLGEKIR 279

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
             ++  ++      + H+T+S G A        P + +I  AD+ALY AK  GRNRV
Sbjct: 280 LAVDALRLEHGQSTAGHVTVSIGGASIVPAPGLPTTALIEAADRALYRAKHDGRNRV 336


>gi|90408005|ref|ZP_01216177.1| regulatory component of sensory transduction system [Psychromonas
           sp. CNPT3]
 gi|90310849|gb|EAS38962.1| regulatory component of sensory transduction system [Psychromonas
           sp. CNPT3]
          Length = 526

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 93/183 (50%), Gaps = 11/183 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYN---EKLSIVFFDIDYFKQI 142
           + EL  +  +I  ++  D L+GL     F    I +L       +K++++F D+D FK++
Sbjct: 331 ITELKHAKKQILYMANHDALTGLAMRQFFQDRLIKALADAKLNKQKIAVLFLDLDGFKKV 390

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRK 201
           ND+FGH  GD V+  ++ +L         VGR+GG+EF        +QE+ I ++  L K
Sbjct: 391 NDSFGHHTGDFVLKEVAIRLTESVREIDTVGRIGGDEFCILLTNIKDQESTITISEKLIK 450

Query: 202 IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           II+          SI I +S GIA    H +    ++  AD+A+Y  K+ GRN     +D
Sbjct: 451 IIDKPY--KYKNESIDIGVSIGIALYPDHADTPEKLVELADKAMYTIKRKGRNNYALTTD 508

Query: 261 IEN 263
            ++
Sbjct: 509 AQS 511


>gi|51102931|gb|AAT96080.1| GGDEF domain protein [Pseudomonas viridiflava]
          Length = 357

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 9/169 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNF 146
           LK +    +R  +L++ D L+ + N  AF+ +      + +  +F   DID FK IND  
Sbjct: 168 LKAILTLESRFRELAQTDYLTSIPNRRAFMETFEGLIAEGAPGYFIMLDIDCFKLINDQH 227

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+V+  ++  L    G+ + VGR+GGEEF     G  +  A      L      S
Sbjct: 228 GHDVGDQVLCSMAACLKATKGSCI-VGRIGGEEFGVLVAGHEQSNATHYILSLL-----S 281

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I +S       T SAG+A       ++ ++  AD  +Y+AKK+G++ V
Sbjct: 282 TIRVSMESPYRYTCSAGMAWFSTGSKMTDVLKLADTNMYLAKKNGKDCV 330


>gi|51243987|ref|YP_063871.1| hypothetical protein DP0135 [Desulfotalea psychrophila LSv54]
 gi|50875024|emb|CAG34864.1| hypothetical protein DP0135 [Desulfotalea psychrophila LSv54]
          Length = 784

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 2/135 (1%)

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           +++  +  DID+FK +ND  GH  GD V+  L+  L +V        R GGEEF      
Sbjct: 641 QQVGFIMADIDHFKMVNDEEGHQAGDSVLRQLAKILKMVIREQDLTIRYGGEEFLIILHN 700

Query: 187 SSEQEAA-ILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQAL 244
            SE  A  I+   +R  +E + + +  G  I  TIS G A        +  +I  AD AL
Sbjct: 701 ISEASAPEIVGEKIRAAVEKTPLTLPGGKQIQKTISIGTANFPKDASKLYQVIKFADVAL 760

Query: 245 YVAKKSGRNRVVCFS 259
           Y AK+ GRNRV+ F+
Sbjct: 761 YKAKEQGRNRVLGFN 775


>gi|84388948|ref|ZP_00991156.1| Response regulator [Vibrio splendidus 12B01]
 gi|84377012|gb|EAP93884.1| Response regulator [Vibrio splendidus 12B01]
          Length = 413

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 5/151 (3%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+GL N     +      E  SI   DID+FK++ND +GH  GD V+  +   +   F
Sbjct: 258 DALTGLWNRRYLFNQTCKGCEHRSIAMMDIDFFKKVNDTYGHDGGDAVLIEVGKIIKEHF 317

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
              + V R GGEEF   +    E     L + +R  IEN ++   S   I +++S G+ +
Sbjct: 318 KDDLAV-RFGGEEFCIQSCEPFEDFIETLES-MRVAIENHEVQHDS-HVIKVSMSIGVTD 374

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  +  +   I  AD+ LY AKK GRN+++C
Sbjct: 375 Q--EGSLDEQIKAADELLYTAKKQGRNQLIC 403


>gi|158422834|ref|YP_001524126.1| putative diguanylate cyclase [Azorhizobium caulinodans ORS 571]
 gi|158329723|dbj|BAF87208.1| putative diguanylate cyclase [Azorhizobium caulinodans ORS 571]
          Length = 514

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 93/203 (45%), Gaps = 23/203 (11%)

Query: 72  VIISITISLLLGYISGSI---LKELFISYNRIS----QLSRIDCLSGLLNHSAF------ 118
           V++     L +G+ S +I   L+   +  +R+     QLS  D L+G+ N   F      
Sbjct: 291 VLVGTAAVLTVGFASIAIALVLRHDLMRRSRLQAELLQLSLTDDLTGIANRRRFFDVAIR 350

Query: 119 ----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVG 173
                  LGS    ++++  DID FK +ND  GH  GD V+  ++  +      P     
Sbjct: 351 EWQRAQRLGS---PVAVLMIDIDRFKLLNDRLGHAAGDAVLQAIAQLIRHSLRRPADLAA 407

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEF A    +    A   A  +R  +E   I      ++ I I+A IA     E  
Sbjct: 408 RYGGEEFTAILPDTDMAGAFQTAERIRTQVERDVIRGDHPVTVSIGIAAAIA--SPNETF 465

Query: 234 STIIYRADQALYVAKKSGRNRVV 256
             ++  AD+ALY AK+SGRNRV+
Sbjct: 466 ENVVAAADRALYRAKESGRNRVM 488


>gi|325929521|ref|ZP_08190635.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
 gi|325540031|gb|EGD11659.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
          Length = 569

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      SL             LS++  D+D+FKQ ND+ GH  GD ++A + 
Sbjct: 402 DALTGLYNRRYLEESLSHELARCARRGLPLSVLMLDVDHFKQFNDSQGHAGGDLLLAAVG 461

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L+          R GGEEF      +  +EA  +A  +R  I    ++  +     +T
Sbjct: 462 ELLLTRLRAEDVACRYGGEEFTVLLPEADGEEAMRVAEQIRSYIAALAVSDGARALPKVT 521

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+A      E  +++I +AD ALY AK +GRNRV
Sbjct: 522 ASIGVASFPADGEQGASLIQKADAALYRAKHAGRNRV 558


>gi|299132064|ref|ZP_07025259.1| diguanylate cyclase with PAS/PAC sensor [Afipia sp. 1NLS2]
 gi|298592201|gb|EFI52401.1| diguanylate cyclase with PAS/PAC sensor [Afipia sp. 1NLS2]
          Length = 321

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 84/173 (48%), Gaps = 30/173 (17%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL----------SIVFFDIDYFKQINDNFGHPVGDKVIA 156
           D L+GL N S F      Y E +          ++V  D+D FK++ND FGH  GD  + 
Sbjct: 147 DPLTGLANRSLFQQR---YREVIGDTLNHGFASALVLIDLDRFKELNDTFGHEAGDACLR 203

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFA--------AAALGSS-EQEAAILANDLRKIIENSQ 207
            ++ +L   F     V RLGG+EFA         A + S  EQ  A+L+   R +  N  
Sbjct: 204 EIAMRLKRAFCNAGLVARLGGDEFALILRAPTNPARIESVLEQTVAMLS---RPVFWNG- 259

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + +  G S    I A +  R H+  I+ +   AD ALY AK +GRN+V  F+D
Sbjct: 260 LRLEVGAS----IGAALIGRPHRRRITELFADADIALYAAKAAGRNKVHLFND 308


>gi|188990916|ref|YP_001902926.1| Putative signal transduction protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732676|emb|CAP50870.1| Putative signal transduction protein [Xanthomonas campestris pv.
           campestris]
          Length = 788

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 9/173 (5%)

Query: 98  NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           + ++  +R D L+GL+N           I    S     ++ F D+D+FK +ND FGH V
Sbjct: 351 DEVAYHARHDALTGLINRREIERRLQRLIDPPQSPQLCHALCFVDLDHFKLVNDTFGHAV 410

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDK +   +D + +      ++GRLGG+EFA   + +    A  L   +  ++     + 
Sbjct: 411 GDKFLCHFADVITMQLRPGDWLGRLGGDEFAILLVNTDLAHAHTLLERMHGVL-GQPWSH 469

Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             G  +  + S G+ E R   + ++ ++  AD A + AK+ GRNR+  F + +
Sbjct: 470 QGGRPLTPSCSFGVVEIRQGADDVNLLMTAADLACHAAKEEGRNRIRSFGETD 522


>gi|54301927|ref|YP_131920.1| GGDEF family protein [Photobacterium profundum SS9]
 gi|46915347|emb|CAG22120.1| hypothetical GGDEF family protein [Photobacterium profundum SS9]
          Length = 133

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 71/130 (54%), Gaps = 4/130 (3%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +   DID FK +ND++GH  GDK++  +++ +         + RLGGEEF      SS  
Sbjct: 1   MAIVDIDLFKNVNDSYGHLAGDKMLIHIANTVSESMNEDEHIARLGGEEFVLLLKESSHI 60

Query: 191 EAAILANDLRKIIENSQINISSG---PS-IHITISAGIAERCHKEPISTIIYRADQALYV 246
           +       LR  I+N ++++ S    PS I  T+S G+ +        +  ++AD+ALY 
Sbjct: 61  KLVSRLETLRDTIQNQKVSVLSTHNIPSKISCTVSIGLTKIMENITFKSSYFKADRALYQ 120

Query: 247 AKKSGRNRVV 256
           AK++GRN+V+
Sbjct: 121 AKRNGRNQVI 130


>gi|117922460|ref|YP_871652.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella sp. ANA-3]
 gi|117614792|gb|ABK50246.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella sp. ANA-3]
          Length = 1228

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 22/172 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           NR+S  SR++ +       AFIS       +++++F D+D+FK IND  GH VGD ++  
Sbjct: 813 NRLSLQSRLEKVF----QEAFIS-----QTQIAVMFIDMDHFKNINDTLGHHVGDMLLLE 863

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK------IIENSQINIS 211
           ++ +L  + G    V RLGG+EF      +     A +A  LR       +I+N  ++  
Sbjct: 864 VARRLKNIMGNDDIVARLGGDEFVVVLSDTDHDRVAKVAEALRSGLNQTYLIDNKPLH-- 921

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           S PSI I++          + +  ++  AD A+Y AK +GRN    F+   N
Sbjct: 922 SSPSIGISLFP-----TDGDSVEALMKNADMAMYRAKAAGRNNYQFFTAAMN 968


>gi|109899877|ref|YP_663132.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109702158|gb|ABG42078.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
          Length = 484

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 4/135 (2%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            LS++ FD+D FK++ND FGH  GDK +  +     +       +GR GG+EF A    S
Sbjct: 349 PLSLIMFDMDNFKKVNDTFGHSAGDKALQRVCRAAQLSLRPTDLLGRFGGDEFVALLPDS 408

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
           +  +A  +A  +   +  +++     P   I  S G+A+    +  + +   AD ALY A
Sbjct: 409 TINDAQQVAQRILSNVNAAEV----APGQPIECSFGVAQLKRNQNFTELFNVADSALYKA 464

Query: 248 KKSGRNRVVCFSDIE 262
           K+ GRN VV    +E
Sbjct: 465 KQRGRNTVVNEDGVE 479


>gi|332529422|ref|ZP_08405382.1| diguanylate cyclase with GAF sensor [Hylemonella gracilis ATCC
           19624]
 gi|332041138|gb|EGI77504.1| diguanylate cyclase with GAF sensor [Hylemonella gracilis ATCC
           19624]
          Length = 465

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 28/178 (15%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+G+ N   F       + +     + L  +  D+D+FK+INDN GHP GD V+  +
Sbjct: 284 TDALTGVHNRRYFEARCLEEVKAAQRSRQPLVCLLLDVDHFKRINDNHGHPAGDAVLREV 343

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS--GPSI 216
              +         V R GGEEF      +  Q     A+ +R  I ++ + + +     +
Sbjct: 344 GQVIRGQLRGNDVVARYGGEEFVLLLPNTPLQGGVETADRIRLAIASAAMPVQTEQDTPL 403

Query: 217 HITISAGIAERCHKE----------------PIST---IIYRADQALYVAKKSGRNRV 255
           HIT+S G A+   +E                P+ +   ++ +ADQALY AK++GRNRV
Sbjct: 404 HITVSLGAAQMDMEERKPVAEAGDAAPRRSTPVESMKRLVQQADQALYAAKQAGRNRV 461


>gi|330966507|gb|EGH66767.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 763

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 122/275 (44%), Gaps = 53/275 (19%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN-------------LSLVIISI 76
           Y  +F  +F   V  +    L  + L     L  ++ EN             L L I +I
Sbjct: 185 YAGMFHQMFRYGVSLLLGAGLLTMHLMGMRALRLVIPENAELHIPGTENSQQLGLTIAAI 244

Query: 77  TISLLLGYISG------------------SILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           T+ ++ G IS                   ++L +L  +   + Q++  D L+ L+N   F
Sbjct: 245 TLLIIAGSISAAMADKKLQGKEHDLQRVNTLLSQLDQARVSLQQVAHYDPLTNLINRRGF 304

Query: 119 ----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  L  +      L+++F DID+FK+IND+ GH  GD+++  +++++         
Sbjct: 305 NQIFAEKLLEHTHSKGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDV 364

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIA----- 225
           V R GG+EF         +EA  LA+   ++++  +  I+ +G  + +T S GIA     
Sbjct: 365 VARFGGDEFCILLSIPDYEEARHLAH---RVMDKMKETIALAGRRMVMTTSIGIAVFPRD 421

Query: 226 -ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              C +     ++  AD ALY +K +GRNRV  FS
Sbjct: 422 GSTCDE-----LLKHADLALYQSKGNGRNRVNFFS 451


>gi|310778591|ref|YP_003966924.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
 gi|309747914|gb|ADO82576.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
          Length = 264

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 4/139 (2%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGS 187
           L+++ FDIDYFK+ ND +GH  GD+++  + + L   F G    +GR GGEEF      +
Sbjct: 127 LTLLMFDIDYFKKYNDRYGHVEGDRILRIIGNLLKKNFKGKTNAIGRYGGEEFLIVLPHT 186

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALY 245
             + +  L    +K ++   +     P   IT+S G+   +    E +  ++ + D+ LY
Sbjct: 187 DLRTSISLVEKFQKKLKICFLEHGDSPFGEITVSIGVKSGKISEYESVDDLVRKVDEELY 246

Query: 246 VAKKSGRNRVVCFSDIENN 264
            AK+SGRN+   FS+ +N 
Sbjct: 247 RAKESGRNK-YSFSEKDNR 264


>gi|254497786|ref|ZP_05110555.1| truncated transposase [Legionella drancourtii LLAP12]
 gi|254352992|gb|EET11758.1| truncated transposase [Legionella drancourtii LLAP12]
          Length = 390

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 79/168 (47%), Gaps = 8/168 (4%)

Query: 100 ISQLSRIDCLSGLLNH---SAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S+L+  D L+ L N    + F+S     +      L +   DID FK  ND + H  GD
Sbjct: 223 LSELTLHDPLTNLYNRRYLNEFLSRELVRIAREKNTLCVAMLDIDNFKNFNDTYSHLAGD 282

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  +   L   F       R GGEEF+   L  +   A       RK ++N+      
Sbjct: 283 EVLKSIGQLLARNFRKSDISFRFGGEEFSVILLNMTLDNAVQRMEQFRKQLKNTIAYYKD 342

Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            P   ITIS G+AE   +   I  II  AD ALY AK++G++RV  ++
Sbjct: 343 RPLPGITISIGVAEAPQQGATIEEIIKAADHALYAAKEAGKDRVNSYN 390


>gi|240137511|ref|YP_002961982.1| putative diguanylate cyclase/phosphodiesterase, GGDEF and EAL
           domains [Methylobacterium extorquens AM1]
 gi|240007479|gb|ACS38705.1| putative diguanylate cyclase/phosphodiesterase, GGDEF and EAL
           domains [Methylobacterium extorquens AM1]
          Length = 668

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 18/163 (11%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GLLN + FI       E+L+      ++  D+D FK +ND +GH  GD+V+A ++ 
Sbjct: 241 DGLTGLLNRAGFIQR---AEEQLAAGASVCLMLLDLDGFKSVNDVYGHSTGDRVLAEVAR 297

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHIT 219
           ++ V         RLGG+EFA     +   E+ A LA  L + +     +  +G    + 
Sbjct: 298 RIRVAVPVDCDAARLGGDEFALVYDSARVIESPAALAERLIRTVAQPFESFDTG---RLG 354

Query: 220 ISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +S GI   CH+  + ++ ++  AD+ALY AK SGRN    F D
Sbjct: 355 MSIGI---CHRPSDSLTHLLSCADEALYAAKHSGRNHFRLFDD 394


>gi|217968132|ref|YP_002353638.1| diguanylate cyclase [Dictyoglomus turgidum DSM 6724]
 gi|217337231|gb|ACK43024.1| diguanylate cyclase [Dictyoglomus turgidum DSM 6724]
          Length = 718

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 10/164 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +  +++L+  D L+ L N       L         Y+  LS++  D+D FK IND  GH 
Sbjct: 547 FEELNRLAITDPLTQLFNRRYIEEELRKEIERSKRYSRPLSVMVLDLDNFKIINDILGHQ 606

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+  + + L         VGR GG+EF      ++ +++  +AN + K +E  +I 
Sbjct: 607 YGDEVLKKIGENLKKSCRKVDTVGRFGGDEFVIILPETNLEKSIKVANKIIKNLEKMEIK 666

Query: 210 ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSG 251
             +G  I+I+IS GIA      K+P   I+  AD A+Y AK+ G
Sbjct: 667 FPNGEKIYISISIGIASYPETSKDP-EKILSLADSAMYNAKRLG 709


>gi|170768708|ref|ZP_02903161.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia albertii TW07627]
 gi|170122256|gb|EDS91187.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia albertii TW07627]
          Length = 652

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    + +        K+ +V+ D+D FK
Sbjct: 210 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDNAIKQADGNKVGVVYLDLDNFK 269

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           ++ND +GH  GD+++  +S  ++        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 270 KVNDAYGHVFGDQLLREVSLAILSCLEQDQVLARLGGDEFLILAPNTSQSALEAMASRIL 329

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G S+ I++S       H    + II  AD A+Y AK+ GR +  
Sbjct: 330 TRLRQPFSIGLIEVYTGCSVGISLSPQ-----HGMDSAAIIRHADTAMYTAKEGGRGQFC 384

Query: 257 CFS 259
            FS
Sbjct: 385 VFS 387


>gi|148978394|ref|ZP_01814888.1| GGDEF domain protein [Vibrionales bacterium SWAT-3]
 gi|145962420|gb|EDK27699.1| GGDEF domain protein [Vibrionales bacterium SWAT-3]
          Length = 657

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 88/176 (50%), Gaps = 20/176 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D L+GL N +         +SS    +++ ++++ D+D FK +NDN+GH  G
Sbjct: 489 RLEHLAHHDALTGLANRARLYKVMDEVVSSSNYASQQFAVIYLDLDGFKHVNDNYGHDAG 548

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII------EN 205
           D ++  +S++L+        V RL G+EF      +++   A LA  L  +I      + 
Sbjct: 549 DAILKEVSNRLLSQVRAGDLVARLSGDEFVLIIKQTNKVMLAKLAERLLTLIGQTVHHKQ 608

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +N+ +   IH+  ++       +  I  I+  AD+A+Y AK  G+ + V  SD+
Sbjct: 609 RSLNVGASLGIHLVDNS-------EHDIDAILKIADEAMYHAKHQGKGQFVFSSDV 657


>gi|126665495|ref|ZP_01736477.1| hypothetical protein MELB17_22920 [Marinobacter sp. ELB17]
 gi|126630123|gb|EBA00739.1| hypothetical protein MELB17_22920 [Marinobacter sp. ELB17]
          Length = 274

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 79/166 (47%), Gaps = 9/166 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+S  +  D L+ L N  AF       ++  G       ++  D+DYFK +ND  GH  G
Sbjct: 103 RLSWEASHDPLTQLFNRRAFGQGLDKALAEAGQNKVATVMLLIDLDYFKPVNDKGGHLTG 162

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DK++  L+D L         V RLGG+EF       + + A  LA  +R  IE + I   
Sbjct: 163 DKLLHRLADLLRQTVHQSDTVARLGGDEFGILLPSCNMERAEALAERIRAGIE-ALIVEH 221

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G    +T S G+A+          I+ RAD+  Y+AK  GRN+VV
Sbjct: 222 EGEDYSVTASIGLAQINPTDTSTKAIMARADEGSYLAKGRGRNQVV 267


>gi|90022874|ref|YP_528701.1| hypothetical protein Sde_3232 [Saccharophagus degradans 2-40]
 gi|89952474|gb|ABD82489.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 498

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 17/165 (10%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           YNR +   R+D          F  +  S  + L  +  DID+FK++ND +GH VGD VI 
Sbjct: 339 YNRRAMRERLD--------DEFAKAQNS-GKDLVCIMLDIDHFKRVNDTYGHGVGDVVIK 389

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++  +         V R GGEEF      ++ ++  I+A   R  IE           +
Sbjct: 390 MVAQVVKEAVRDSDIVARFGGEEFCVVLPNATVEQVKIIAKRCRMTIETQNCG-----GV 444

Query: 217 HITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +T S GIA      K P + +I++AD+ALY +K++GRN V  + 
Sbjct: 445 KVTSSFGIAALSLGAKSP-NDLIHQADEALYNSKQNGRNMVSVWQ 488


>gi|159184622|ref|NP_354139.2| hypothetical protein Atu1119 [Agrobacterium tumefaciens str. C58]
 gi|159139920|gb|AAK86924.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 320

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 6/159 (3%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+ L N +AF+  LG+   K       S+V  DID+F++IN  +G   G+K +  L+ 
Sbjct: 145 DSLTALPNRAAFLEKLGALFAKDRAASATSLVLLDIDHFREINGKYGSSAGNKALRRLAA 204

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
                     FV R+GG+EFA    G  +  A  +A  LR+ +E      S G   H+T+
Sbjct: 205 LFRKTIKKDDFVARIGGDEFAFLFAGVPQNTAEAIAERLRQSVEALHFATSGGDGEHLTV 264

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           S G+A        +     A+ AL  A+   RN V+ +S
Sbjct: 265 SIGVAAVDGTATAAEFFGHAELALLSARSGTRNCVIGYS 303


>gi|71734073|ref|YP_272405.1| sensory box protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71554626|gb|AAZ33837.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 316

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 2/129 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+ +  DID FK +ND +GH  GD V+  +++            GR+GGEEFAA   G +
Sbjct: 187 LAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCA 246

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVA 247
              A  +A  L++ I+      S G +  IT S G+     ++  + T+  RAD A+Y A
Sbjct: 247 PDMAMQIAERLQREIQRQNFQ-SGGTTFSITASQGLTNLGPEDSSLETLYGRADAAMYQA 305

Query: 248 KKSGRNRVV 256
           K+ G+N++V
Sbjct: 306 KRQGKNQIV 314


>gi|113972148|ref|YP_735941.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella sp. MR-4]
 gi|113886832|gb|ABI40884.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella sp. MR-4]
          Length = 1209

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 22/172 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           NR+S  SR++ +       AF+S       +++++F D+D+FK IND  GH VGD ++  
Sbjct: 794 NRLSLQSRLETVF----QEAFVS-----QTQIAVMFIDMDHFKNINDTLGHHVGDMLLLE 844

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK------IIENSQINIS 211
           ++ +L  +  +   V RLGG+EF      +     A +A  LR       II+N  ++  
Sbjct: 845 VARRLKNIVSSDDIVARLGGDEFVVVLSDTDHDSVAKVAEALRSGLNQTYIIDNKPLH-- 902

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           S PSI I++          + +  ++  AD A+Y AK +GRN    F+   N
Sbjct: 903 SSPSIGISLFP-----TDGDSVEALMKNADMAMYRAKAAGRNNYQFFTAAMN 949


>gi|330992597|ref|ZP_08316545.1| Putative signaling protein [Gluconacetobacter sp. SXCC-1]
 gi|329760796|gb|EGG77292.1| Putative signaling protein [Gluconacetobacter sp. SXCC-1]
          Length = 582

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 97/192 (50%), Gaps = 16/192 (8%)

Query: 82  LGYISGSI-----LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--------K 128
           LG I G +     + EL  + +R+  L+  D L+GL N   F + L +  E        +
Sbjct: 115 LGAIEGYVATRFEITELMNTRDRLKSLAATDPLTGLFNRGGFNNVLQTAVEHKAQNITRE 174

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           + +V FD+D FKQIND  GH  GD V+  +S +L+ +      V RLGG+EFA     + 
Sbjct: 175 IMLVMFDLDGFKQINDIHGHHAGDVVLKVISARLMALVSPEDAVCRLGGDEFALILDHTL 234

Query: 189 EQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVA 247
            +    L + L +++   +  I  G + ++++ S G++    +E   ++   AD ALY A
Sbjct: 235 TRRP--LQDILDQLLAELEAPIEVGNTMVNVSGSIGVSPVASQESAESLQKNADIALYAA 292

Query: 248 KKSGRNRVVCFS 259
           K++G ++   F 
Sbjct: 293 KRAGGHQARMFD 304


>gi|317152638|ref|YP_004120686.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942889|gb|ADU61940.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
          Length = 958

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 13/163 (7%)

Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N        S  +S       K++++F D+D FK+IND+FGH  GD ++  ++
Sbjct: 528 DGLTGLPNRVLVLDRLSMALSHANRTGTKVAVLFLDLDNFKKINDSFGHAQGDTLLKAVA 587

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           ++LV ++     V R GG+EF    +    E+E   LA  L+++ E  +  +  G  + I
Sbjct: 588 ERLVALYRDEDTVARQGGDEFLVVVVDVHEEREVVDLAEGLQRVFE--EPFVIKGQEVFI 645

Query: 219 TISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           T S G+       ++P S ++  AD A+Y +K  GRN    F+
Sbjct: 646 TPSIGVTLYPDDGQDPAS-LVKNADMAMYQSKAKGRNSYFLFT 687


>gi|262403389|ref|ZP_06079949.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio sp.
           RC586]
 gi|262350888|gb|EEZ00022.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio sp.
           RC586]
          Length = 361

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 81/164 (49%), Gaps = 19/164 (11%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+G LN     S L          NE + I   DID+FK IND +GH  GDKVI
Sbjct: 180 LSTRDALTGTLNRYQLDSFLKKNIRLRQIGNESVVIAVIDIDHFKSINDLYGHDTGDKVI 239

Query: 156 AFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
               +Q+V +  T       + RLGG+EF      ++  EA ++ + +   I+ +     
Sbjct: 240 ----NQVVEMINTHSRELDLLFRLGGDEFLLLFENTTVTEATLVMSHIGCRIQQTHYPNH 295

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +     +TIS G+AE    +     + RAD +LY +KK G+NRV
Sbjct: 296 AK----VTISVGLAEVLRTDDPEQWVKRADLSLYHSKKMGKNRV 335


>gi|189424221|ref|YP_001951398.1| diguanylate cyclase/phosphodiesterase [Geobacter lovleyi SZ]
 gi|189420480|gb|ACD94878.1| diguanylate cyclase/phosphodiesterase [Geobacter lovleyi SZ]
          Length = 859

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 13/196 (6%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------ 123
           SLVI SI  +LL   + GSI K ++     +   +  D L+ L N   F   LG      
Sbjct: 409 SLVINSILTTLL--NVIGSI-KAIYKYTKDLEYYATRDPLTNLFNQRVFWELLGYEIGRA 465

Query: 124 -SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
             ++++  ++  D+D FK IND +GH VGDK +  ++D +         + R GG+EFA 
Sbjct: 466 ERHHQQFGVLVIDLDNFKHINDTYGHLVGDKYLVQIADTIHASLRLGDILARYGGDEFAI 525

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRA 240
               +  ++  ++AN +R+ +E   +  + G  I  T S G A  C  H      +   A
Sbjct: 526 VLPDADHEQVHMVANRIREAMEAMTLVTADGSKIRGTASIGYA-VCPDHATTAKDLFLFA 584

Query: 241 DQALYVAKKSGRNRVV 256
           D   Y AK  G+N +V
Sbjct: 585 DNMTYKAKSLGKNCIV 600


>gi|156743760|ref|YP_001433889.1| diguanylate cyclase with GAF sensor [Roseiflexus castenholzii DSM
           13941]
 gi|156235088|gb|ABU59871.1| diguanylate cyclase with GAF sensor [Roseiflexus castenholzii DSM
           13941]
          Length = 732

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 78/141 (55%), Gaps = 10/141 (7%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+++  D+D FKQIND +GHP+GD+V+  +S        +   + R GGEE   A L  +
Sbjct: 589 LAVILADLDDFKQINDVYGHPIGDRVLQMVSTVFRRELRSGDLLARYGGEEI-IALLPET 647

Query: 189 EQEAAILA-NDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-----ISTIIYRADQ 242
           + E A+     LR I+  + +  + G  + +T S G+A     EP     +  +I +ADQ
Sbjct: 648 DHEGAVRGVERLRLILAQAVVATNQG-DVSVTASFGVA--IFAEPFDVPNVEQLITQADQ 704

Query: 243 ALYVAKKSGRNRVVCFSDIEN 263
           AL  AK++G+NRV  + + ++
Sbjct: 705 ALLRAKQAGKNRVEVWHEKDH 725


>gi|258627626|ref|ZP_05722402.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258580069|gb|EEW05042.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 314

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 20/183 (10%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +++  D LS L N   F   L          +E L++V  DID FK+ ND+FGH  GD
Sbjct: 135 LDKMAHTDSLSSLANRLKFDEQLNVEFKRSRRQSEPLTVVMIDIDEFKKFNDHFGHIAGD 194

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           + I  ++  L  +   P     R GGEEFA     + E+ A  + N+L   +E  Q+ I+
Sbjct: 195 ECIRKIAHTLRSITKRPADLAARYGGEEFALILPSTEEEGAKSMVNELINAVE--QLVIA 252

Query: 212 SGPSIH---ITISAG----IAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIE 262
             P      +T+S G      E+   E +    +   AD ALY +K++GRN+   F  I 
Sbjct: 253 HSPEAMNQCVTVSVGYTVLYPEQVDFEQLKAVDVAQTADNALYTSKRNGRNQAT-FEPIP 311

Query: 263 NNT 265
             T
Sbjct: 312 TTT 314


>gi|254974322|ref|ZP_05270794.1| putative signaling protein [Clostridium difficile QCD-66c26]
 gi|255091718|ref|ZP_05321196.1| putative signaling protein [Clostridium difficile CIP 107932]
 gi|255313446|ref|ZP_05355029.1| putative signaling protein [Clostridium difficile QCD-76w55]
 gi|255516134|ref|ZP_05383810.1| putative signaling protein [Clostridium difficile QCD-97b34]
 gi|255649230|ref|ZP_05396132.1| putative signaling protein [Clostridium difficile QCD-37x79]
 gi|306519332|ref|ZP_07405679.1| putative signaling protein [Clostridium difficile QCD-32g58]
          Length = 832

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 13/165 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPV 150
           NR+    + D L+ + N +A+I  L + N       +  +++  DIDYFK IND +GH V
Sbjct: 669 NRLLDKVQRDSLTNIYN-AAYIRKLTTQNLLNLSTEKNGALLIIDIDYFKSINDTYGHLV 727

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQIN 209
           GDKV+  ++  L   F     VGRLGG+EF+        +E  I   ND+   I    I 
Sbjct: 728 GDKVLIDVAKVLDESFAKDDIVGRLGGDEFSVYINDIINKEELINKCNDVYNHIH--LIK 785

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + +G S+ I++   I +R  +     +   AD ALY +K+ GRNR
Sbjct: 786 LPNGESLSISMGVVITKRGQE--YDELYQIADNALYDSKRQGRNR 828


>gi|120556569|ref|YP_960920.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei
           VT8]
 gi|120326418|gb|ABM20733.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei
           VT8]
          Length = 759

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 12/170 (7%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++  D L+ L N   F       ++     N +L++V+ D+D FK +ND FGH  GD ++
Sbjct: 591 MAHYDALTNLPNRVLFSDRLHQSMAQARRQNYRLAVVYIDLDQFKPVNDAFGHDAGDGLL 650

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGP 214
             ++ ++         + RLGG+EFAA  +   +     IL + L  +I  ++    +  
Sbjct: 651 VEVARRMRATLREEDSLARLGGDEFAAIIVNVPDAVTLDILLSRLLTVI--AEPVWVANH 708

Query: 215 SIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCFSDIE 262
           S+ ++ S G       E I    ++ +ADQA+Y AK+ G+NR  CF D +
Sbjct: 709 SVEVSASMGYTLYPQGEEIDGDQLLRQADQAMYRAKREGKNRYYCFQDAD 758


>gi|113477644|ref|YP_723705.1| response regulator receiver modulated diguanylate cyclase
           [Trichodesmium erythraeum IMS101]
 gi|110168692|gb|ABG53232.1| response regulator receiver modulated diguanylate cyclase
           [Trichodesmium erythraeum IMS101]
          Length = 357

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 11/163 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           ++S  D L+G+ N   + + L    +K       +S++  DID+FK  ND +GHP GD  
Sbjct: 185 KISNTDPLTGIPNRYCWETVLQQDWKKSIYDAQPISLIMIDIDFFKLFNDAYGHPEGDIC 244

Query: 155 IAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212
           +  ++ ++      T     R GGEEF      + +  A  +A  +R  + + +I N  S
Sbjct: 245 LRKVAQEIKKPLTRTTDLAARYGGEEFVVVLPNTGKHRAMFIAESIRMQVNSLKIVNEDS 304

Query: 213 GPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRN 253
               +ITIS G+A      K  +  +I +AD+ALY AKK+GRN
Sbjct: 305 KVDKYITISLGVATTIPTIKSHLDELISQADKALYFAKKNGRN 347


>gi|269925562|ref|YP_003322185.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Thermobaculum terrenum ATCC BAA-798]
 gi|269789222|gb|ACZ41363.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Thermobaculum terrenum ATCC BAA-798]
          Length = 1785

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 8/155 (5%)

Query: 107  DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
            D L+GL N + F+  L         YN   +++F D+D FK +ND+ GH  GD+++  + 
Sbjct: 1360 DALTGLPNRALFMDRLKGALARAKRYNSCCAVLFLDLDRFKHVNDSLGHQYGDQLLIEVG 1419

Query: 160  DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            ++L+ V  +   V R GG+EF        E E A    + R I E  +  + +G  ++I+
Sbjct: 1420 NRLLSVVRSADTVARRGGDEFTILLEPICELEYAKQVAE-RVIKELEKPFLINGQELYIS 1478

Query: 220  ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             S GIA          +I+ AD A+Y AK  GR R
Sbjct: 1479 TSIGIALSNEYSDAEELIHNADVAMYWAKSRGRAR 1513


>gi|218438776|ref|YP_002377105.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp.
           PCC 7424]
 gi|218171504|gb|ACK70237.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp.
           PCC 7424]
          Length = 960

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 56/194 (28%), Positives = 94/194 (48%), Gaps = 11/194 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
           ++  +   L +      + ++L  +  ++  L+ ID L+ + N   F         +L  
Sbjct: 761 LLTQLATQLAIAIQQSELHQQLQSTNQQLENLALIDQLTQIPNRRCFDHDLERHWQNLAR 820

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAA 183
               LS++  DIDYFKQ ND +GH  GD  +  ++  L          V R GGEEF   
Sbjct: 821 QKRPLSLLLCDIDYFKQYNDTYGHSGGDVCLTQVAQALKASARRASDLVARYGGEEFVII 880

Query: 184 ALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTI--IYRA 240
              +    A  +A +++K ++  ++ + +SG S ++T+S GIA    +  + +I  I  A
Sbjct: 881 LPDTDNFGAIAVAQNIQKTLKELRLPHRASGVSSYVTVSIGIATLIPRSDLPSIELINAA 940

Query: 241 DQALYVAKKSGRNR 254
           DQALY AK  GR+R
Sbjct: 941 DQALYQAKAQGRDR 954


>gi|88860382|ref|ZP_01135020.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Pseudoalteromonas tunicata
           D2]
 gi|88817580|gb|EAR27397.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Pseudoalteromonas tunicata
           D2]
          Length = 312

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 10/167 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSI--VFFDIDYFKQINDNFGHPVG 151
           +I Q   +D L+GL N SA    L      +  ++LSI  V  D+D FK+IND+FGH  G
Sbjct: 143 KIQQQVWLDALTGLPNRSALFQYLTTQINNAQRKRLSINVVMLDLDGFKEINDDFGHQAG 202

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++++L        F+ RLGG+EF    +     E  +   + +  + N  I IS
Sbjct: 203 DDVLIAVANRLNQNKRASDFIARLGGDEFIWVLVECHPDEKVLELLEEKLSLINEPIVIS 262

Query: 212 ---SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              +  ++H+  S G+     ++    +I  AD+A+Y++K  G+N++
Sbjct: 263 VNDTPHNVHVGASIGVTTWHGEQNPQMLISTADKAMYISKNKGKNKI 309


>gi|207728363|ref|YP_002256757.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
 gi|206591609|emb|CAQ57221.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
          Length = 636

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 21/183 (11%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFIS------SLGSYN-EKLSIVFFDIDYFKQINDNFGH 148
           +  RI  L+  D L+GLLN  A         +L   N  ++S++F D+D FK IND  GH
Sbjct: 188 AQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRNGTRVSVMFLDLDRFKNINDTLGH 247

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+++  ++ +L         V RLGG+EF            ++     R++ E    
Sbjct: 248 QFGDQLLREVAARLQACAREADTVARLGGDEFVVML-------ESLDGMGTRRVAERILA 300

Query: 209 NISS-----GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF-SDI 261
            I +     G  + + +S GIA   H  +  +T++ +AD A+Y+AK+ GRN    F SD+
Sbjct: 301 AIGAPFHIEGQELFVGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNFQTFTSDL 360

Query: 262 ENN 264
           ++ 
Sbjct: 361 DDR 363


>gi|188996703|ref|YP_001930954.1| diguanylate cyclase with PAS/PAC sensor [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931770|gb|ACD66400.1| diguanylate cyclase with PAS/PAC sensor [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 675

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 80/166 (48%), Gaps = 11/166 (6%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDK 153
            +LS  D L+GL N    +  +    EK       LSIV  D+D FK+IND  GH  GD 
Sbjct: 511 KELSIRDPLTGLYNRRFALEFMNKEIEKSKRNGKPLSIVMIDLDDFKKINDIHGHSAGDN 570

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-NSQINISS 212
           ++   SD L           R GGEEF      +S+ +   +   +R   + N+   +SS
Sbjct: 571 ILKIFSDVLKKELRKSDISCRWGGEEFLLILPETSKDKTLDVIERIRMTFQLNTMGIVSS 630

Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
            P  ++T S GIA      + I  II  AD  LYVAK+ G+NRVV 
Sbjct: 631 RP--YLTASMGIASYPEDSDNIDEIIKIADDRLYVAKREGKNRVVT 674


>gi|156974799|ref|YP_001445706.1| hypothetical protein VIBHAR_02517 [Vibrio harveyi ATCC BAA-1116]
 gi|156526393|gb|ABU71479.1| hypothetical protein VIBHAR_02517 [Vibrio harveyi ATCC BAA-1116]
          Length = 537

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 87/163 (53%), Gaps = 13/163 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           + +++ +D L+ LLN   F  +L  Y   + K S+V FDID FK IND +GH  GD+ + 
Sbjct: 377 LKRMAELDPLTQLLNRRVFNDNLLHYINGDVKFSLVGFDIDRFKLINDKYGHLAGDEALL 436

Query: 157 FLSDQLV---VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            ++ +LV   ++ G   +  R GG+EF   +  + + E A   + LR I+ +S  +  S 
Sbjct: 437 HVT-KLVNANLLDGDRFY--RAGGDEFCILSQVTDKGELATYLDKLRGIVASSPFDYEST 493

Query: 214 PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
           P   I  S  I    HK E   ++ ++ D  LY +KK+GRN V
Sbjct: 494 P---IICSLSIGAAVHKGEDPESLFHKMDVQLYQSKKNGRNSV 533


>gi|95930629|ref|ZP_01313363.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95133281|gb|EAT14946.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 368

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 91/177 (51%), Gaps = 14/177 (7%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDN 145
           L  ++  + +++RID L+ + N   F  S     +K       LSI+  DID+FK+ ND 
Sbjct: 187 LEKAHAALERIARIDGLTQIANRRTFDESFTEQWQKSLVEQSPLSIILCDIDFFKRYNDT 246

Query: 146 FGHPVGDKVIAFLSDQLVVVFG--TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           +GH  GD  ++ ++  L       +   V R GGEEF      +S +EA   A   R  I
Sbjct: 247 YGHQQGDTCLSSVAQALEQTLSEQSSGLVARYGGEEFIFLLPATSVEEATAHAETARNNI 306

Query: 204 ENSQI-NISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E   + + +S  + ++T+S G++    +   +P   +I  AD+ALY +K++GRNRV 
Sbjct: 307 EQLALEHQASEVADNVTLSLGVSCTIPQSDMQP-QHLIRTADEALYQSKETGRNRVT 362


>gi|239809507|gb|ACS26228.1| unknown [uncultured bacterium pJM6]
          Length = 417

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 73/158 (46%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F        +      +  S++  D D FK IND FGH  GD+V+  L+
Sbjct: 263 DALTGLFNRRHFYHITEAEQTHAMPLTQDYSLLLIDTDRFKSINDLFGHLKGDEVLCALA 322

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R GGEEF      +S   A  LA  LR  +  +++++   P    T
Sbjct: 323 RTLEACARIDDLVFRWGGEEFLLLLPRTSLDVALNLAETLRATV--ARVSLPGLPR--FT 378

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A     E I  +  R D ALY AK  GRNRV+ 
Sbjct: 379 VSIGVARHEANESIDELFKRVDDALYKAKNEGRNRVLA 416


>gi|289208300|ref|YP_003460366.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
 gi|288943931|gb|ADC71630.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
          Length = 325

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 12/158 (7%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N  A        I     ++  LS++  DID+FK IN  +GH  GD+ +   +
Sbjct: 163 DPLTGIANRRALFEQAEHEIERAHRHHRPLSLLVLDIDHFKTINTQYGHAQGDEALRQFT 222

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIH- 217
                +     F+GR+GGEEF      + +  A  L     +I+E    +++    + H 
Sbjct: 223 QCCARLLRDTDFMGRIGGEEFVMLLPETDQLGAEQLGA---RIVEAIPTLDVPGMNNEHR 279

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +T+S G A R   E    ++ RAD AL  AK+SGRNR+
Sbjct: 280 MTVSIGAATRLEGEGFEDLLVRADDALSTAKRSGRNRL 317


>gi|213966819|ref|ZP_03394970.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
 gi|301381949|ref|ZP_07230367.1| GGDEF domain protein [Pseudomonas syringae pv. tomato Max13]
 gi|302058790|ref|ZP_07250331.1| GGDEF domain protein [Pseudomonas syringae pv. tomato K40]
 gi|302135168|ref|ZP_07261158.1| GGDEF domain protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213928669|gb|EEB62213.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
          Length = 366

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 9/159 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           ++  +L+  D L+ + N  AF+ S  S     E   ++  +ID FK IND  GH +GD++
Sbjct: 176 SKFRELAETDYLTSIPNRRAFMESFDSLIKGGESGYLIMLNIDNFKLINDRHGHEIGDRI 235

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  L    G+    GR+GGEEF     G  E  A    + + +++E  + N    P
Sbjct: 236 LCSMAACLRATSGSHC-AGRIGGEEFGVLITGGDELTA---CDYILRLLETVRANFD--P 289

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             + + SAG+        +S  +  AD+++Y+AK++G++
Sbjct: 290 PYNYSCSAGMVRFSAASTMSEALSMADKSMYIAKRNGKD 328


>gi|170740443|ref|YP_001769098.1| diguanylate cyclase with PAS/PAC sensor [Methylobacterium sp. 4-46]
 gi|168194717|gb|ACA16664.1| diguanylate cyclase with PAS/PAC sensor [Methylobacterium sp. 4-46]
          Length = 554

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 82/169 (48%), Gaps = 21/169 (12%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R + L+  D L+GL N   F   L        S     +++  D+D FK +ND+ GHP+G
Sbjct: 375 RAAHLASHDPLTGLPNRLLFQERLARHLAETRSRGVPCAVLCLDLDGFKAVNDSLGHPIG 434

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAILANDLRKIIENS 206
           D ++  ++D++         V RLGG+EFA    G   +E     A  L + +R+ +   
Sbjct: 435 DALLREVADRIRATLRASDTVARLGGDEFAVLLPGHQPRERSGRVAERLIDAVREPLRLK 494

Query: 207 QINISSGPSIHITISA--GIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           ++ +  G SI I ++   G+ E         +I RAD ALY AK  GRN
Sbjct: 495 EMQVVVGVSIGIAVAPEDGLDE-------DDLIRRADVALYRAKGGGRN 536


>gi|104781568|ref|YP_608066.1| diguanylate cyclase [Pseudomonas entomophila L48]
 gi|95110555|emb|CAK15263.1| putative diguanylate cyclase (GGDEF) domain [Pseudomonas
           entomophila L48]
          Length = 375

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 101/204 (49%), Gaps = 19/204 (9%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-- 120
           +IL E++   + +I IS    Y++ ++++E      R +  S  D L+G+ N  AF+   
Sbjct: 183 FILFESM---LFAIGIS----YVTLAMVRERAEVQLRTAAYS--DPLTGIGNRRAFMEHG 233

Query: 121 -----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++  D+D+FK+IND +GHP GD+V+   +++            R+
Sbjct: 234 THLLHDCAAQRVPVALLLCDLDHFKRINDQYGHPKGDQVLLAFAEEARRHLRQGDLFARI 293

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           GGEEFA    G  E  A  +A  +        +       + I I++  A++C    +S 
Sbjct: 294 GGEEFACLLPGGDEAAAEHVARRICAAFAALPLLEPGALGVSIGIASQPAQQCD---LSR 350

Query: 236 IIYRADQALYVAKKSGRNRVVCFS 259
           ++  AD ALY AK+ GR+R + ++
Sbjct: 351 LLSMADHALYQAKQQGRSRALQYA 374


>gi|260682404|ref|YP_003213689.1| putative signaling protein [Clostridium difficile CD196]
 gi|260686003|ref|YP_003217136.1| putative signaling protein [Clostridium difficile R20291]
 gi|260208567|emb|CBA61247.1| putative signaling protein [Clostridium difficile CD196]
 gi|260212019|emb|CBE02568.1| putative signaling protein [Clostridium difficile R20291]
          Length = 837

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 13/165 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPV 150
           NR+    + D L+ + N +A+I  L + N       +  +++  DIDYFK IND +GH V
Sbjct: 674 NRLLDKVQRDSLTNIYN-AAYIRKLTTQNLLNLSTEKNGALLIIDIDYFKSINDTYGHLV 732

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQIN 209
           GDKV+  ++  L   F     VGRLGG+EF+        +E  I   ND+   I    I 
Sbjct: 733 GDKVLIDVAKVLDESFAKDDIVGRLGGDEFSVYINDIINKEELINKCNDVYNHIH--LIK 790

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + +G S+ I++   I +R  +     +   AD ALY +K+ GRNR
Sbjct: 791 LPNGESLSISMGVVITKRGQE--YDELYQIADNALYDSKRQGRNR 833


>gi|81301344|ref|YP_401552.1| diguanylate cyclase [Synechococcus elongatus PCC 7942]
 gi|81170225|gb|ABB58565.1| diguanylate cyclase (GGDEF domain) with PAS/PAC and GAF sensors
            [Synechococcus elongatus PCC 7942]
          Length = 1099

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 77/158 (48%), Gaps = 8/158 (5%)

Query: 107  DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
            D L+GL N           ++      + + I+  DIDYFK+ ND FGH  GD V+  ++
Sbjct: 912  DPLTGLFNRRYLQEFFEQELARAKRSGDSIGILMLDIDYFKRFNDEFGHDAGDMVLKQVA 971

Query: 160  DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
              L+        V R GGEE A    G+S + +A  A+ +R+ I    I+        +T
Sbjct: 972  RALLNQVRASDVVCRFGGEEIAILMPGASLEVSARKADQIRQAIAQLIISYHEQTLPSLT 1031

Query: 220  ISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVV 256
            IS G+A        S T+I  AD +LY AK +GRN VV
Sbjct: 1032 ISIGVAAFPESGLASDTLIKSADTSLYQAKAAGRNCVV 1069


>gi|70730672|ref|YP_260413.1| diguanylate cyclase [Pseudomonas fluorescens Pf-5]
 gi|68344971|gb|AAY92577.1| diguanylate cyclase, putative [Pseudomonas fluorescens Pf-5]
          Length = 322

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 9/160 (5%)

Query: 102 QLSRIDCLSGLLNHSAFIS----SLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q++ +D L+ L N   F +    +LG      +  +++FFD++ FKQIND +GH  GD  
Sbjct: 162 QMASMDELTLLSNRRGFEALARHALGVCKRLEKPATLLFFDLNDFKQINDTYGHAEGDGA 221

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   +D L + F     +GRLGG+EF A    +   E + +   LR+I++     +  G 
Sbjct: 222 LKTFADVLRIAFRESDVIGRLGGDEFVALLTAADHVETSAIMARLREILDERNATLKRGY 281

Query: 215 SIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253
            I  ++   I     + P I  ++  AD+A+Y+ K++ + 
Sbjct: 282 DIRFSVGQ-IEYDAERHPDIEALLADADKAMYLHKQASKR 320


>gi|56751584|ref|YP_172285.1| hypothetical protein syc1575_c [Synechococcus elongatus PCC 6301]
 gi|56686543|dbj|BAD79765.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 1068

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 77/158 (48%), Gaps = 8/158 (5%)

Query: 107  DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
            D L+GL N           ++      + + I+  DIDYFK+ ND FGH  GD V+  ++
Sbjct: 881  DPLTGLFNRRYLQEFFEQELARAKRSGDSIGILMLDIDYFKRFNDEFGHDAGDMVLKQVA 940

Query: 160  DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
              L+        V R GGEE A    G+S + +A  A+ +R+ I    I+        +T
Sbjct: 941  RALLNQVRASDVVCRFGGEEIAILMPGASLEVSARKADQIRQAIAQLIISYHEQTLPSLT 1000

Query: 220  ISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVV 256
            IS G+A        S T+I  AD +LY AK +GRN VV
Sbjct: 1001 ISIGVAAFPESGLASDTLIKSADTSLYQAKAAGRNCVV 1038


>gi|146278363|ref|YP_001168522.1| diguanylate cyclase [Rhodobacter sphaeroides ATCC 17025]
 gi|145556604|gb|ABP71217.1| diguanylate cyclase [Rhodobacter sphaeroides ATCC 17025]
          Length = 347

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 101/218 (46%), Gaps = 24/218 (11%)

Query: 57  PFYGLEYILVE----NLSLVIISITISLLLGYISGSILKELFISYNRISQL---SRIDCL 109
           P   L ++ V+     L + +I + ++L    + G++L+    +  R   L   ++ D L
Sbjct: 131 PLVVLAWLPVDPEHSRLMIGMILVLLNLAGALVFGTLLQRERSAAQRERALVAETQTDAL 190

Query: 110 SGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +G+LN  +F           GS    L IV  DID+FK++ND  GH  GD V+   + +L
Sbjct: 191 TGVLNRRSFERRFADADGLAGSRGTGLMIV--DIDHFKRVNDVHGHEAGDIVLRAAATRL 248

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                    V RLGGEEFA        QEA   A+ L++++      I     + IT+S 
Sbjct: 249 RNAVRPGDSVIRLGGEEFAVLLPDVDAQEAERAAHRLQRML-TMNCRIDEARRVDITVSI 307

Query: 223 GIAERCHKEPISTII----YRADQALYVAKKSGRNRVV 256
           G+    H  P S  +      AD ALY AK  GR RVV
Sbjct: 308 GV---THLPPASAALPVASRTADGALYRAKSDGRARVV 342


>gi|319945119|ref|ZP_08019381.1| diguanylate cyclase [Lautropia mirabilis ATCC 51599]
 gi|319741689|gb|EFV94114.1| diguanylate cyclase [Lautropia mirabilis ATCC 51599]
          Length = 619

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 11/165 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           + Q S  D L+ L N   F   L    E+       L++   DID+FK++ND +GH  GD
Sbjct: 452 LEQASLRDPLTNLFNRRYFNEQLAIEFERASRARSPLALQTVDIDHFKRLNDRYGHEAGD 511

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  +S+ LV        V R GGEEF     G +   A   A+++R+ ++     +  
Sbjct: 512 RVLVQVSEVLVQNARAGDIVCRWGGEEFLILMPGLNGTSAKRRADEIRRKVQEKVETVGG 571

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            P   +++S G+A    H      ++  +D+ALY +K +GRNRV 
Sbjct: 572 AP---VSVSIGVAAYPEHASDPEGLVNVSDRALYASKGAGRNRVT 613


>gi|318041085|ref|ZP_07973041.1| putative GAF sensor diguanylate cyclase [Synechococcus sp. CB0101]
          Length = 331

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 14/184 (7%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVF 133
           +L  ++  +++EL      + Q S    ++GL N S F        E+       L++  
Sbjct: 149 MLQLMADLVMREL-----ELRQRSMQCPVTGLYNRSVFFRFGEQEFEQARDECTPLALFN 203

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           FDID F+QIN  +GH  GD+V+  L   +    G     GR+G EEF+   + +S   A 
Sbjct: 204 FDIDDFRQINMRWGHQAGDQVLLDLCAVVQKQLGHEDLFGRIGDEEFSVLLVNASMTRAM 263

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGR 252
            LA  +R+ I  +   +      H  IS GI       +  + + YRADQALY+AK +GR
Sbjct: 264 ALAESIRQAIA-AMRGVFDQSDYHPNISGGITALADTDQSFADLFYRADQALYLAKGNGR 322

Query: 253 NRVV 256
           N+V 
Sbjct: 323 NQVA 326


>gi|311692959|gb|ADP95832.1| sensory box/FOG: EAL domain/GGDEF domain containing protein [marine
           bacterium HP15]
          Length = 1162

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 23/168 (13%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N S F   L         +++ ++++F D+D FK IND  GH VGDK++  ++
Sbjct: 732 DLLTGLANRSLFNDRLKHDFELAKRHSQSMAVLFIDLDEFKPINDTLGHRVGDKLLVSVA 791

Query: 160 DQLVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILANDLRK--IIENSQINISS 212
           ++L  +      + R GG+EF          G +E+ A  +  +L K   I+N++     
Sbjct: 792 ERLNSLIRPSDTLARFGGDEFVLLLPDLEETGLAEEIAERILQELAKPHQIDNNE----- 846

Query: 213 GPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFS 259
              +HI+ S GIA   H       ++ RAD A+Y AK+ GR+    +S
Sbjct: 847 ---LHISASIGIATNSHSSRFPEKLLQRADMAMYKAKQQGRDTYEIYS 891


>gi|302189448|ref|ZP_07266121.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 523

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 85/178 (47%), Gaps = 18/178 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNE-KLSIVFFDIDYFKQIND 144
           EL  + N +  ++  D L+ L N   F ++L       S N+  ++I+  DID+FKQ ND
Sbjct: 328 ELNSARNDLEIIAHTDSLTHLANRRCFDTALQQEWGRASRNDATIAIILLDIDWFKQYND 387

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDL 199
            +GH  GD  +     Q+  + G  +        R GGEEF      +    A  LA  +
Sbjct: 388 TYGHLQGDDCLR----QVAGLIGNSLDRSGDIAARYGGEEFVILLPETDLAGALRLAEKI 443

Query: 200 RKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           R  IE S I  SS P   ++IS+G+       K   +  +  AD+ LY+AK  GRNRV
Sbjct: 444 RSSIEASCIEHSSSPLGRLSISSGVVAVNAAEKNRHTAALEEADRLLYLAKTKGRNRV 501


>gi|297539271|ref|YP_003675040.1| diguanylate cyclase [Methylotenera sp. 301]
 gi|297258618|gb|ADI30463.1| diguanylate cyclase [Methylotenera sp. 301]
          Length = 485

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 10/175 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL +  +++  LS+ D L+G+ N  +F   L          N+ L++   DID+FK+ ND
Sbjct: 309 ELQLLNHKLEGLSKTDGLTGIANRRSFDDVLEIEWMRAKRANQPLALAMLDIDWFKRYND 368

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           ++GH  GD+ +  +S+ L   +  T   V R GGEEF   A   S  +A  ++  + + +
Sbjct: 369 HYGHQAGDECLRRVSNILASNLCRTGDLVARYGGEEFVFIAPAISGDQALEISRKICEAL 428

Query: 204 ENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVV 256
            +  +        ++T+S G+A    +  +    ++  AD ALY AK+ GRNR +
Sbjct: 429 HSLALPHELSTFGYVTVSVGVASITPQGSQKSDVLVKMADDALYQAKEQGRNRAL 483


>gi|229131569|ref|ZP_04260454.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196]
 gi|228651887|gb|EEL07839.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196]
          Length = 569

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKLS--IVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++     EK+   +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNKMIAEKIEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       +  E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKTHTHDEMRQLATSVLSCFQAP- 253

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGKDVETLLKNSDLAMYSAKEQGRNAACFFTD 306


>gi|217975275|ref|YP_002360026.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica OS223]
 gi|217500410|gb|ACK48603.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica OS223]
          Length = 310

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 86/169 (50%), Gaps = 26/169 (15%)

Query: 106 IDCLSGLLNHSAFISSLGS------YNE-KLSIVFFDIDYFKQINDNFGHPVGD----KV 154
           +D L+G+ N   F   L         NE  LS+V  D+D+FK+ ND +GH  GD    +V
Sbjct: 146 LDSLTGVANRRQFEQRLPEIWKHCCRNELALSVVMLDVDFFKRFNDRYGHQEGDQCLRQV 205

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKI-IENSQIN 209
              +SD L        FV R GGEEF        L  +   A  + N ++ + +E+ + +
Sbjct: 206 AKAISDSLQRATD---FVARYGGEEFICILPETKLAGAIHTAQKIVNAVQALHLEHLESS 262

Query: 210 ISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
                   +TISAG+A    K  ++  T+I  ADQ LY+AK+SGRN+VV
Sbjct: 263 FQD-----VTISAGVASVLPKSDLTWQTLIETADQQLYLAKESGRNQVV 306


>gi|71279665|ref|YP_270581.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71145405|gb|AAZ25878.1| sensory box/GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 297

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 93/185 (50%), Gaps = 25/185 (13%)

Query: 85  ISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFF--D 135
           I GSIL   E   +   + QL+  D L+GL N  + + SL       + E  ++ F   D
Sbjct: 112 IVGSILDITERKKAEKSLEQLALSDSLTGLDNRYSLMKSLKHSLLRQHRENFTLAFLMLD 171

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI- 194
           +D FKQINDN+GHPVGD ++  ++++L   F     + R+GG+EF+         E+ I 
Sbjct: 172 LDGFKQINDNYGHPVGDALLIEVANKLKNHFRESDVIARVGGDEFSVILENIHSTESLIV 231

Query: 195 LANDLRK------IIENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVA 247
           LAN++        +I+N++  I         IS GIA     E  S  II  AD ALY  
Sbjct: 232 LANNILAEFLKPFVIDNNKFTIG--------ISIGIATSSFSECSSEDIIKHADAALYQV 283

Query: 248 KKSGR 252
           K SG+
Sbjct: 284 KNSGK 288


>gi|326315660|ref|YP_004233332.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372496|gb|ADX44765.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 424

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 33/212 (15%)

Query: 66  VENLSLVIISITIS---LLLGYIS--GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +E L  V +++ +    LL+G +     +L++       I++ +R+D L G LN  + ++
Sbjct: 201 LEALHFVALALALPAYVLLMGRVRLLHRLLQKTSSEMKSIAESARLDAL-GCLNRRSILA 259

Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           +L    +        L +   D+D+FK+IND  GH  GD+V+   S     +  +  F G
Sbjct: 260 ALEEQKQLADESGIPLCLAVVDLDHFKRINDEMGHLCGDEVLRTFSQLAQQIVRSDDFFG 319

Query: 174 RLGGEEF--------AAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           R GGEEF           AL + E+  + + ++D ++ +              +T+S G+
Sbjct: 320 RYGGEEFLLIFPATPLLPALNTCERIRSQVESHDWKEPLRG-----------RVTVSVGV 368

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +    E +     RAD A+Y+AK+ GRN+VV
Sbjct: 369 TQYVLGESVLEFFSRADTAMYLAKQGGRNQVV 400


>gi|218528994|ref|YP_002419810.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           chloromethanicum CM4]
 gi|218521297|gb|ACK81882.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           chloromethanicum CM4]
          Length = 668

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 18/163 (11%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GLLN + FI       E+L+      ++  D+D FK +ND +GH  GD+V+A ++ 
Sbjct: 241 DGLTGLLNRAGFIQR---AEEQLAAGASVCLMLLDLDGFKSVNDVYGHSTGDRVLAEVAH 297

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHIT 219
           ++ V         RLGG+EFA     +   E+ A LA  L + +     +  +G    + 
Sbjct: 298 RIRVAVPVDCDAARLGGDEFALVYDSARVIESPAALAERLIRTVAQPFESFDTG---RLG 354

Query: 220 ISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +S GI   CH+  + ++ ++  AD+ALY AK SGRN    F D
Sbjct: 355 MSIGI---CHRPSDSLTHLLSCADEALYAAKHSGRNHFRLFDD 394


>gi|332533290|ref|ZP_08409156.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037172|gb|EGI73628.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 673

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 8/167 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS----YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           ++ Q +  D L+ L N   F   L S       K +++F D+D FK++ND+ GH  GD +
Sbjct: 240 QLQQYAYQDGLTDLPNRRYFYEKLQSLVSIKGMKFALIFIDLDGFKEVNDSLGHDYGDLL 299

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSG 213
           +  ++ +L     T   V RLGG+EF     G +S  EA+ +A  ++  +  S I I   
Sbjct: 300 LHQVATRLQSCITTKDTVARLGGDEFTLILEGVNSPDEASKIAEAVKSSLMQS-IKIKK- 357

Query: 214 PSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++++T S G+         +  ++ RADQA+Y++K  GRNR   FS
Sbjct: 358 ETVYVTASIGLTFFPADGLTVEELVRRADQAMYLSKNKGRNRYEFFS 404


>gi|320158258|ref|YP_004190636.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
 gi|319933570|gb|ADV88433.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
          Length = 446

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 104/218 (47%), Gaps = 31/218 (14%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI----D 107
           Y  L P+Y                  I  L+GY +  IL  +F++  R+  ++      D
Sbjct: 240 YAALMPWY---------------QTQIVRLIGYPTALILCLVFLAIYRLYTMAHSRSLHD 284

Query: 108 CLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            L+GL N   F+ SL  +         ++  +++  D+D FKQIND  GH  GDKV+   
Sbjct: 285 ELTGLPNRRYFMYSLEHHFEHAKKQGRDDTFAVINLDLDRFKQINDTHGHAAGDKVLIAC 344

Query: 159 SDQLVVVFGTPMFVGRLGGEEF-AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +++L     +   V R+GG+EF   +A  + E++  IL N L+  + +  I +  G  I+
Sbjct: 345 AERLKSTLRSTDLVARIGGDEFLVLSARMTHEKDMEILLNKLKAALCSMPI-VYEGELIY 403

Query: 218 ITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNR 254
           + IS G     H+   S  ++ +ADQ +Y  KK+ + R
Sbjct: 404 LHISIGYCLFHHEMKDSEEMLKQADQRMYNEKKANKMR 441


>gi|318603956|emb|CBY25454.1| hmst protein [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 523

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 80/156 (51%), Gaps = 9/156 (5%)

Query: 104 SRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           ++ D ++GL N     ++L       +  S++  DID+FK+IND++GH VGD+VI  L+ 
Sbjct: 370 AQTDPMTGLYNRRGLATTLEPIVQLGQHFSVIALDIDHFKEINDSYGHDVGDEVIKQLAI 429

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHIT 219
           Q+         + R GGEEF      +    +  +A  LR  +E   + NI       IT
Sbjct: 430 QIRESSRDSDILCRSGGEEFLMLLPSTVPDVSTQVAKRLRHNVEMMVMANIRP-----IT 484

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           IS G+A    +      + RAD+ALY AK+  RNRV
Sbjct: 485 ISLGVAFWNGEGTPEDALKRADEALYRAKQQWRNRV 520


>gi|310658061|ref|YP_003935782.1| diguanylate cyclase [Clostridium sticklandii DSM 519]
 gi|308824839|emb|CBH20877.1| Diguanylate cyclase [Clostridium sticklandii]
          Length = 524

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 24/210 (11%)

Query: 69  LSLVIISITISLLL---GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-- 123
           L L+I++  ISL++   G  S  I K L        + + ID L+   +    +  L   
Sbjct: 321 LILIIVAAGISLVIHIEGIYSNKINKNL-------KREADIDALTNAFSRRRGVEELSNA 373

Query: 124 --SY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
             SY   N+  +I+ FD+D FK INDN+GH VGD V+      +  V  +   + R GG+
Sbjct: 374 HRSYMRGNKNPAIMMFDLDRFKLINDNYGHDVGDMVLRRTVQSINEVVRSSDIIIRWGGD 433

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS---IHITISAGIA--ERCHKEPI 233
           EF     G  ++    +A  +   I   +I + +      + I +S G+    +  ++P 
Sbjct: 434 EFIGIFYGLKKENTIKIAQKILDTINAIEIPVKTSDVDDIVKIEMSIGVTYFSKSDRQP- 492

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           S  + RAD A+Y +K++GRN+ V F D+E+
Sbjct: 493 SDAVKRADDAMYESKETGRNK-VSFFDVED 521


>gi|307728234|ref|YP_003905458.1| diguanylate cyclase [Burkholderia sp. CCGE1003]
 gi|307582769|gb|ADN56167.1| diguanylate cyclase [Burkholderia sp. CCGE1003]
          Length = 503

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 101/210 (48%), Gaps = 26/210 (12%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           L+  L L +I++ + L    + G +L E       +  L+R D L+G+ N   F  +L S
Sbjct: 289 LIGALDLTLIALAV-LFAQQMRGRLLAE-----EELRVLARTDGLTGVDNRRTFEHALES 342

Query: 125 -------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD---QLVVVFGTPMFVGR 174
                  +   LS++  D+D FK  ND +GH  GD  +  ++    + V   G  M   R
Sbjct: 343 ECRRVQRHGGPLSLLLIDVDNFKGFNDLYGHSAGDDALITVARCIARNVQRSGDTM--AR 400

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH--ITISAGIAERCHKEP 232
            GGEEFA     + +  A  LA  +R  +E   + +S   S H  +T+S G+A     E 
Sbjct: 401 YGGEEFAVLLPDTDQDGARALAETIRASVE--ALALSHVASSHHVLTVSIGVAT-MRGEA 457

Query: 233 IST---IIYRADQALYVAKKSGRNRVVCFS 259
           ++    ++  ADQALY AK +GRNRV  + 
Sbjct: 458 LTASRRLVDAADQALYAAKDAGRNRVFTYG 487


>gi|260577432|ref|ZP_05845396.1| diguanylate cyclase [Rhodobacter sp. SW2]
 gi|259020355|gb|EEW23687.1| diguanylate cyclase [Rhodobacter sp. SW2]
          Length = 551

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 7/161 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           Q +R D L+GL N    +  L        +E  +I+  D+D+FK  ND +GH  GD+V+ 
Sbjct: 360 QATR-DVLTGLFNRRYLMDRLHRRIERQADESFAIMSIDVDHFKAFNDAYGHEAGDEVLR 418

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            L + L      P    R+GGEEF       ++ +A   A  LR  +    ++ +     
Sbjct: 419 VLGEMLSASCNAPEIACRMGGEEFILVLPNLAKDQAVERAEALRIAVNELCVHHAGNTLP 478

Query: 217 HITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVV 256
            I++S G+A        S  ++ +AD+ALY AK +GRN VV
Sbjct: 479 PISVSVGVALYSGIGDASLDVLRQADEALYAAKSAGRNHVV 519


>gi|209695775|ref|YP_002263705.1| putative membrane associated GGDEF protein [Aliivibrio salmonicida
           LFI1238]
 gi|208009728|emb|CAQ80032.1| putative membrane associated GGDEF protein [Aliivibrio salmonicida
           LFI1238]
          Length = 260

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 85/172 (49%), Gaps = 11/172 (6%)

Query: 94  FISYNR--ISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           +++Y+R  +  L+  D L+ L N ++      S+L + + K++++  D+D FKQ ND  G
Sbjct: 83  YMTYSRRKLRLLTEKDTLTTLNNRASIFNKIKSTLKTPHSKMALIMLDVDNFKQFNDEHG 142

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           HP GD  +  LS  L      P  +GR+GGEEF       S+ E + L N LR  +E S 
Sbjct: 143 HPNGDLALKHLSIVLQKHLSFPHEIGRVGGEEFMIILKNLSKLECSRLINKLRIELEQST 202

Query: 208 INISSGPSIHITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                   + IT S     I E      I  I +  D+ LY AK +GRN +V
Sbjct: 203 FMTLDVKRLAITASFSWMYIEESM--TDIDQIYFVLDEGLYQAKANGRNCIV 252


>gi|163938551|ref|YP_001643435.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus weihenstephanensis KBAB4]
 gi|229165570|ref|ZP_04293346.1| Sensory box/GGDEF [Bacillus cereus AH621]
 gi|163860748|gb|ABY41807.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus weihenstephanensis KBAB4]
 gi|228617897|gb|EEK74946.1| Sensory box/GGDEF [Bacillus cereus AH621]
          Length = 567

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKLS--IVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++     EK+   +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNKMIAEKIEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       +  E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKTHTHDEMRQLATSVLSCFQAP- 251

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 252 -FMLEGHEVYISASLGLCSYPQDGKDVETLLKNSDLAMYSAKEQGRNAACFFTD 304


>gi|264677400|ref|YP_003277306.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262207912|gb|ACY32010.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 339

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 18/179 (10%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           S+ KEL +       LS  D L+ + N   F +S     E+       LS++ FD+D+FK
Sbjct: 161 SLQKELEV-------LSFKDGLTSIANRRCFDTSFEQEWERTRSDGKPLSMLLFDVDFFK 213

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           Q ND +GH  GDK +  ++  L +   G    V R GGEEF      +  + A  +A   
Sbjct: 214 QYNDLYGHIQGDKCLVDIAQTLSLALDGQRDLVARYGGEEFVVLLPEADAETAQKVAERC 273

Query: 200 RKIIENSQINISSGP---SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +++I+   I  +  P    + ++I AG  +    +  ++ I   D+ LY AK  GR+R+
Sbjct: 274 QRLIQKQSIVHALSPHGRRVTMSIGAGTVQPAEHDRPASFIEAVDRQLYAAKNKGRHRI 332


>gi|192359424|ref|YP_001980711.1| putative GGDEF domain-containing protein [Cellvibrio japonicus
           Ueda107]
 gi|190685589|gb|ACE83267.1| putative GGDEF domain protein [Cellvibrio japonicus Ueda107]
          Length = 526

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           R  +L+  D L+GL N  A  + L  +       +  L+++  D+D FKQIND++GH  G
Sbjct: 350 RTRELAETDSLTGLTNRPAAEAILDQWLIQAAATSRGLAVMMIDLDRFKQINDSYGHDAG 409

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++++L  +      V RLGG+EF      +   +  +     ++I++     I 
Sbjct: 410 DQVLRVVANRLRKLVRDSDLVARLGGDEFLIVLKQTDNPD--VDKRIAQQILDAQAAPIE 467

Query: 212 SGPSI--HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
             P +   + IS GIA    H +   ++   ADQALY  K+ G+N
Sbjct: 468 IQPQVLETVGISIGIAHYPAHGDNPQSLRRHADQALYSVKRRGKN 512


>gi|189183991|ref|YP_001937776.1| response regulator PleD [Orientia tsutsugamushi str. Ikeda]
 gi|189180762|dbj|BAG40542.1| putative response regulator protein [Orientia tsutsugamushi str.
           Ikeda]
          Length = 489

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 82/171 (47%), Gaps = 11/171 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           NR++ L+  D L+ + N   F       I+     N+ L ++  D D+FK +ND +GH V
Sbjct: 318 NRLN-LAAKDGLTNIFNRRYFDSHINQLINDAKDSNKSLFLIMIDFDHFKMVNDIYGHQV 376

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEF--AAAALGSSEQEAAILANDLRKIIENSQI 208
           GD+V+      +         + R GGEEF          +Q+A  LAN ++  IE    
Sbjct: 377 GDEVLKASVKIIETNIRVTDLIARYGGEEFIITIYDDDIDQQKAIALANRIKIKIETHNF 436

Query: 209 NISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            IS+    +  TIS GI E    E  + +I R D+ALY AK  GRN+V   
Sbjct: 437 IISNLKLQLKQTISIGITEYDPPEDANALISRTDKALYNAKHYGRNQVCAL 487


>gi|78043307|ref|YP_359559.1| GGDEF domain-containing protein [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995422|gb|ABB14321.1| GGDEF domain protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 653

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 94/180 (52%), Gaps = 5/180 (2%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-LGSYNEKLSIVFFDIDYFKQIN 143
           +SG ++K L++  N ++++S  D L+   N      + L + +   S++F D+D FK+IN
Sbjct: 475 MSGPLVK-LYLLKNYLAEISLRDPLTQAFNRRFLEDAILENRDCNYSLIFIDLDKFKEIN 533

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD V+  L+ ++     +   V R+GG+E       +  +    +AN + ++I
Sbjct: 534 DTYGHNAGDLVLIKLTQKIRENLRSQDQVIRMGGDEILIYLPNTPIELTREIANRIMELI 593

Query: 204 ENSQINI---SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              Q  +   +   + +++ S GI      E    ++ R D+ALY AK+ GRN++V  +D
Sbjct: 594 RKEQFTVMKDTKTVTFNVSASMGIGSCREGESFEEVLARVDKALYRAKELGRNQIVVAAD 653


>gi|50122071|ref|YP_051238.1| putative regulator [Pectobacterium atrosepticum SCRI1043]
 gi|49612597|emb|CAG76047.1| putative regulator [Pectobacterium atrosepticum SCRI1043]
          Length = 515

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 81  LLGYISGSILKELFISYNRISQ-LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132
           L   I  +I+++   S N   Q L+  D L+GL N   F       +  +    + ++++
Sbjct: 323 LKNQIDLTIVRDELTSVNHTLQTLALFDGLTGLANRRQFDIFLQQTLLRVAETRQCMALI 382

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQE 191
             D+D FK+ ND++GH  GD+ +  + + L  +       V R GGEEFA     + +Q 
Sbjct: 383 MIDVDAFKKYNDHYGHVAGDECLRKIGNALSKMPKRKEDLVARYGGEEFAIIITDTDKQG 442

Query: 192 AAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYV 246
           A  LA  +   +   +I   ++  P   +TISAG+   C   P  T   +I  AD ALY 
Sbjct: 443 ATTLAQRVLNSVREEKIAHEMTLFPEKIVTISAGVYVFCVDNPPPTAASVIDIADAALYR 502

Query: 247 AKKSGRNR 254
           AK SG+NR
Sbjct: 503 AKNSGKNR 510


>gi|299534226|ref|ZP_07047577.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298717873|gb|EFI58879.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 315

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 18/179 (10%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           S+ KEL +       LS  D L+ + N   F +S     E+       LS++ FD+D+FK
Sbjct: 137 SLQKELEV-------LSFKDGLTSIANRRCFDTSFEQEWERTRSDGKPLSMLLFDVDFFK 189

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           Q ND +GH  GDK +  ++  L +   G    V R GGEEF      +  + A  +A   
Sbjct: 190 QYNDLYGHIQGDKCLVDIAQTLSLALDGQRDLVARYGGEEFVVLLPEADAETAQKVAERC 249

Query: 200 RKIIENSQINISSGP---SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +++I+   I  +  P    + ++I AG  +    +  ++ I   D+ LY AK  GR+R+
Sbjct: 250 QRLIQKQSIVHALSPHGRRVTMSIGAGTVQPAEHDRPASFIEAVDRQLYAAKNKGRHRI 308


>gi|316932426|ref|YP_004107408.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
 gi|315600140|gb|ADU42675.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
          Length = 502

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 87/172 (50%), Gaps = 17/172 (9%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148
           +  ++ +L+  D L+GL N   F +++ +        N  ++++  D D+FK  ND FGH
Sbjct: 326 AERQLEELAITDPLTGLTNRRKFDAAIDTEWRRAIRQNTPIALLMIDADHFKAYNDRFGH 385

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GD+++  ++   V +  T    G    R GGEEFA    G +   A  +A  +R+ ++
Sbjct: 386 QAGDQMLVGIA---VCIADTVQRAGDCAARFGGEEFAVLLPGLTASAAEAVAETIRRKVQ 442

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               +I  G ++ + +++      H+     ++  AD+ALY AK+ GRNR V
Sbjct: 443 EWS-DIEGGVTVSVGVASTTPAAAHQ--WHDLVEAADRALYAAKELGRNRCV 491


>gi|54308566|ref|YP_129586.1| hypothetical protein PBPRA1373 [Photobacterium profundum SS9]
 gi|46912995|emb|CAG19784.1| hypothetical protein PBPRA1373 [Photobacterium profundum SS9]
          Length = 203

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 89/168 (52%), Gaps = 18/168 (10%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEK-LSIVFFDIDYFKQINDNFGHPV 150
           R+ + + +D L+G+ N    +  LG       S N+K  S++ FDID FK+IND +GH V
Sbjct: 15  RLYRQAILDPLTGIYNRRMLLR-LGKKSMQECSQNDKPFSVLLFDIDKFKRINDTWGHSV 73

Query: 151 GDKVI----AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GDKV+    AF+  +   +  T +F GR GGEEF           A  ++N +   I   
Sbjct: 74  GDKVLTGFTAFVQGK---IRKTDLF-GRYGGEEFILFLPDCPSDTAIKISNRMLTAIRAL 129

Query: 207 QINIS-SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           ++ I+    S+ IT   GI+     + +++++ RAD ALY  K SGR+
Sbjct: 130 KLPINIENQSLSITTCIGISTYSENDTLASMLERADLALYQCKHSGRD 177


>gi|254562232|ref|YP_003069327.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens
           DM4]
 gi|254269510|emb|CAX25476.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL), with
           GAF and two PAS/PAC sensor domains [Methylobacterium
           extorquens DM4]
          Length = 1003

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 11/163 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFF--DIDYFKQINDNFGHPVGD 152
           I  ++R D L+GL N   F  +L     G+  +  S+V    D+D FK +ND FGHP GD
Sbjct: 576 IEHMARHDALTGLPNRRLFQETLAREIDGALRDGGSVVVLCCDLDRFKAVNDTFGHPAGD 635

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
            ++  ++ +L         V RLGG+EFA       +Q    +A   R++I+ +   +  
Sbjct: 636 ALLRVVAGRLRATLREGDVVARLGGDEFAIILPSRGKQRR--IAAFARRLIQAAGRPVDL 693

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
            G +  + +S G+A    H +   T+   AD ALY AK SGRN
Sbjct: 694 GGRATTVGVSIGVAVWPKHGDNADTLFKNADIALYRAKDSGRN 736


>gi|167035266|ref|YP_001670497.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1]
 gi|166861754|gb|ABZ00162.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1]
          Length = 754

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 16/183 (8%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NE-KLSIVFFDIDYFKQ 141
           +L +L  +   + Q +  D L+ L+N   F             NE +L+++F DID+FK+
Sbjct: 275 LLSQLDQARASLQQAAHYDALTNLVNRRGFNQVFAERLVEHQANENRLAVMFLDIDHFKR 334

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD+++  +++ +     +   V RLGG+EF      +S  EA  LA   ++
Sbjct: 335 INDSLGHDAGDELLKVIANHIKAATRSQDLVARLGGDEFCVVTSLNSRDEARHLA---QR 391

Query: 202 IIENSQINIS-SGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVC 257
           I++  +  I   G  + +T S G++     +  ST   ++  AD ALY +K +GRN +  
Sbjct: 392 IMQRMKDPIDLGGRRMVMTTSIGVS--IFPDDGSTAEELLKHADLALYQSKDNGRNSLNF 449

Query: 258 FSD 260
           F+D
Sbjct: 450 FND 452


>gi|189424029|ref|YP_001951206.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter lovleyi SZ]
 gi|189420288|gb|ACD94686.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter lovleyi SZ]
          Length = 300

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 12/176 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL      +  LS  D L+G  N           +      +  +S++  DID+FK+IN
Sbjct: 127 EELRKRNKELELLSHKDALTGAFNRRYLCHILNVELGRAARTDGMVSVLMLDIDHFKEIN 186

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKI 202
           D FGH  GD  +  ++ +            R GGEEF      +S++EA  +A+ L +K+
Sbjct: 187 DRFGHQAGDLALKKVTAEATACLRDYDLFFRYGGEEFVVMLPDTSKREALKVAHRLCQKV 246

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256
              +  +IS  P + IT+S G+A     +   +  ++  ADQALY AK+SGR++V 
Sbjct: 247 RAIAFSHIS--PDLKITVSIGVAAYPDNDVCSVEELLAHADQALYQAKQSGRDQVA 300


>gi|13471907|ref|NP_103474.1| hypothetical protein mlr2027 [Mesorhizobium loti MAFF303099]
 gi|14022651|dbj|BAB49260.1| mlr2027 [Mesorhizobium loti MAFF303099]
          Length = 867

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 8/173 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           EL ++   I   +  D L+GL N       ++  G  + + +++  D+D FKQIND  GH
Sbjct: 434 ELNLAKAHIEYAALHDSLTGLPNRRYLDELLAENGKPDRRTALLHLDLDRFKQINDTLGH 493

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD ++   S  +    G   FV R+GG+EF   + G  +   + LA+   +IIE+ + 
Sbjct: 494 AAGDAMLVHASKVIQANVGRDDFVARIGGDEFVVVSHGLDDDGLSALAH---RIIEDMRQ 550

Query: 209 NIS-SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +   G      +S GIA   +   +  ++  AD ALY AK  GRNR   F++
Sbjct: 551 PVDYRGHPCRFGVSIGIAAN-NGVDVKQLLVNADLALYRAKSRGRNRYEFFNE 602


>gi|315123462|ref|YP_004065468.1| sensory box protein [Pseudoalteromonas sp. SM9913]
 gi|315017222|gb|ADT70559.1| sensory box protein [Pseudoalteromonas sp. SM9913]
          Length = 990

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 101/218 (46%), Gaps = 25/218 (11%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI---DCLSGLLNHSAFI 119
           Y  + N+S++     ++  LG     I  ++  +  +  QLSRI   D L+ L N     
Sbjct: 508 YAELLNISVLKDDNNVTFYLG-----IFTDITQAKRQQEQLSRIAHYDLLTNLPNRVLLA 562

Query: 120 SSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L         +N  L++VF D+D FK +ND+ GH +GDK++  LS +L         +
Sbjct: 563 DRLSQTMLQCRRHNNSLAVVFLDLDGFKHVNDSHGHDIGDKLLIALSIRLKDALREGDSL 622

Query: 173 GRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            R+GG+EF A    LGS      +L   L    +   +N      I + +SA I    + 
Sbjct: 623 ARIGGDEFVAVLTNLGSVADCVPVLERLLAAAAKPVTVN-----DIVLNVSASIGVTIYP 677

Query: 231 E---PISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           E       ++  ADQA+Y+AK+ G+NR   F   + +T
Sbjct: 678 EDNLDAKQLMRHADQAMYIAKQMGKNRYHLFDTSQGDT 715


>gi|158520342|ref|YP_001528212.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3]
 gi|158509168|gb|ABW66135.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3]
          Length = 394

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 77/169 (45%), Gaps = 24/169 (14%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+GL +  A    L +     +I   D+D+FK+ ND +GH VGD+V+  ++  L    
Sbjct: 226 DELTGLPSRRALNEKLQALGRTYTIAMVDVDHFKRFNDRYGHDVGDEVLKKVAAALKRAG 285

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---------SSGPS-- 215
           G      R GGEEF     G +  +    A   R  +  S   I          S P   
Sbjct: 286 GNAY---RFGGEEFTLVFPGKALAQGKAAAEAARNAVSRSAFTIRSPARKKKDGSAPEKA 342

Query: 216 -------IHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRV 255
                  + +T+S G+A+R   H  P   +I  AD+ALY AKK+GRNR 
Sbjct: 343 TPGKRKRVSVTVSIGLAQRSSRHTTP-DAVIKAADRALYRAKKNGRNRT 390


>gi|104782034|ref|YP_608532.1| diguanylate cyclase [Pseudomonas entomophila L48]
 gi|95111021|emb|CAK15741.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           entomophila L48]
          Length = 362

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 107/218 (49%), Gaps = 18/218 (8%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISL--LLGY----ISGSILKELFISYNRISQLSR 105
           ++ L PF+     L+E    ++ S  + L  L+ Y    +  + L   +++   + Q + 
Sbjct: 147 WLMLNPFFHTRIALLELEGAMLFSYALCLSGLVTYSYLRLRQAKLHNFYLTKVLLEQ-AY 205

Query: 106 IDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +D L+ + N  +F++      ++      +   DID FK++ND FGH +GD+V+  ++  
Sbjct: 206 VDALTEIPNRRSFMAKAEKQLQQAGPGQFLAMIDIDNFKKVNDRFGHDIGDEVLKRVAGH 265

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +         + RLGGEEFA    G +EQ A      +  + +  + + +  P   +TIS
Sbjct: 266 IKAAM-VGFEIARLGGEEFAIFFQGLNEQGA---EEQVGALCQRVREDAAEHP---VTIS 318

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            G+      + ++  + RADQALY AK +G++R V + 
Sbjct: 319 IGLTRVDSGDTLTLALIRADQALYEAKHTGKDRFVVWD 356


>gi|91792311|ref|YP_561962.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91714313|gb|ABE54239.1| GGDEF domain [Shewanella denitrificans OS217]
          Length = 694

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 9/170 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFIS------SLGSYNE-KLSIVFFDIDYFKQINDNFGHPV 150
           + +++L+++D L+ + N    +       +L   N+ K+S++  D+D+FK IND FGH V
Sbjct: 474 SELARLAQVDELTQVFNRRQLVLLGGQVLALAERNKTKVSVIMVDLDFFKSINDRFGHNV 533

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD  +  +++ L  +       GRLGGEEFA      + ++A   A   R  I    ++ 
Sbjct: 534 GDWALRRVAETLNALGRKSDVFGRLGGEEFAFVLSDCALEQALDFAELCRNEIATIDVSD 593

Query: 211 SSGP-SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S  P ++ +T S G+ E       +  ++  ADQALY AK S RN VV F
Sbjct: 594 SLFPGALSLTASFGVTETGLSGYDLEGLLSDADQALYQAKDSQRNCVVKF 643


>gi|329295649|ref|ZP_08252985.1| diguanylate cyclase [Plautia stali symbiont]
          Length = 124

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 67/125 (53%), Gaps = 2/125 (1%)

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQ 190
           +F D D FK INDN+GH  GD+V+  ++ +L  +      V RLGG+EFA      +SE 
Sbjct: 1   MFLDGDRFKSINDNWGHAAGDEVLKAIAARLSALAYQDDLVARLGGDEFAMLITSRTSEA 60

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +   L  D+R  I  S I IS G  I  +++ G A   H + + +I+ RAD  +Y  K  
Sbjct: 61  DLQQLTEDIRTAIAQS-IVISEGTQITTSVTIGYAWSQHGDSVVSILERADMHMYKNKGM 119

Query: 251 GRNRV 255
            + RV
Sbjct: 120 SKVRV 124


>gi|254410977|ref|ZP_05024755.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196182332|gb|EDX77318.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 508

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 102/212 (48%), Gaps = 17/212 (8%)

Query: 56  TPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH 115
           TP    +   ++ L+ ++  ++I++        + +++      + +L +ID L+G+ N 
Sbjct: 291 TPNRQWQTWEIDCLNQLVKQVSIAIQ----QSELYQKVKTDNQHLQKLVKIDSLTGIANR 346

Query: 116 SAFISSLGS------YN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
             F   L         N   LS++  DID+FK  ND +GH VGD  +  +++ +      
Sbjct: 347 RRFDQVLAEELICSRRNLTPLSLILCDIDFFKAYNDTYGHWVGDNCLKEVAEAICQAAQR 406

Query: 169 PM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH--ITISAGIA 225
           P   V R GGEEF      +    A I+A  +R  ++  +   +  P IH  +T+S GIA
Sbjct: 407 PSDLVARYGGEEFVVILSNTDNPGAFIVAQKIRYQMDKLKRPHAKSP-IHPWVTLSLGIA 465

Query: 226 ERC--HKEPISTIIYRADQALYVAKKSGRNRV 255
                H+   S ++  AD+ALY AK  GR+R+
Sbjct: 466 TTTPSHQLSSSELVQLADRALYKAKALGRDRI 497


>gi|332295745|ref|YP_004437668.1| diguanylate cyclase with PAS/PAC and GAF sensors [Thermodesulfobium
           narugense DSM 14796]
 gi|332178848|gb|AEE14537.1| diguanylate cyclase with PAS/PAC and GAF sensors [Thermodesulfobium
           narugense DSM 14796]
          Length = 897

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 83/170 (48%), Gaps = 13/170 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           +LS  D L+   N   F   L    E+        S++  DID FK +NDN+GH +GDKV
Sbjct: 732 ELSVKDSLTDSYNRRYFEKRLEEEIERTKRSNIPFSLIMLDIDDFKVVNDNYGHEIGDKV 791

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +   +        F+ R GGEEF      ++   A  LA +L+  +    I     P
Sbjct: 792 LINIVKLVKNRIRKTDFIARWGGEEFMILLTNTNLHFAKKLALELKGGMYKLDI-----P 846

Query: 215 SIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            I  +T S G+      + +++I+ R D+ +Y AK +G++ V+C  D++N
Sbjct: 847 EIEFVTASFGVTTYHESDTVNSIVKRVDKLMYAAKAAGKDCVMCDFDVQN 896


>gi|294339054|emb|CAZ87403.1| hypothetical protein; putative EAL, GGDEF and membrane domains
           [Thiomonas sp. 3As]
          Length = 799

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 10/166 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVG 151
           Y     ++  D L+GL N  AF+  L +      ++ L++   D+D FK +ND  GH VG
Sbjct: 195 YKTYRTIAHRDDLTGLANRRAFMQKLSATLVKHPHQALAVGMIDLDRFKIVNDRLGHSVG 254

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINI 210
           D+++  +  +L  V      + RLGG+EF     G +S  +   +A+ L K +E  +  +
Sbjct: 255 DQLLVAVGQRLRSVLRQTDVLARLGGDEFVVMFTGYTSLDQLRAVADRLVKSMEQ-EFTV 313

Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNR 254
            S  ++ I +S GI  +   +P+   T++ RAD A+Y +K+ GR +
Sbjct: 314 QSH-ALQIGLSLGIVIQQQAKPVDALTLMRRADLAMYASKEGGRQQ 358


>gi|77918128|ref|YP_355943.1| GGDEF domain-containing protein [Pelobacter carbinolicus DSM 2380]
 gi|77544211|gb|ABA87773.1| FOG: GGDEF domain containing protein [Pelobacter carbinolicus DSM
           2380]
          Length = 426

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 29/169 (17%)

Query: 97  YNRISQLSRIDCL-----SGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           YNR   L+R + L     +G   +++F+S          ++  D D FK IND +GHPVG
Sbjct: 255 YNRREVLARTEELLSQWRAGGDRNASFVS----------VLMVDFDNFKIINDTYGHPVG 304

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  L+ ++         +GR+GGEEF     G       +  +  R+I E     + 
Sbjct: 305 DRVLQELAARIQSCLEPKDILGRMGGEEFLVVLPG-------VGVSACREIAERLCQAVC 357

Query: 212 SGP------SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
             P       I  +IS G+A  R H   +  +++ ADQ LYVAK SG+N
Sbjct: 358 GTPFDPENYRISGSISVGMATMRAHGGSVDAMLHDADQGLYVAKNSGKN 406


>gi|83592321|ref|YP_426073.1| diguanylate cyclase [Rhodospirillum rubrum ATCC 11170]
 gi|83575235|gb|ABC21786.1| Putative diguanylate cyclase (GGDEF domain) [Rhodospirillum rubrum
           ATCC 11170]
          Length = 508

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 27/211 (12%)

Query: 70  SLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           ++V+  IT  L LG  +  +L     ++  ++ + +S+L+  D L+GL N       L  
Sbjct: 292 AIVVGGITFVLCLGVGAVVVLLLREFRQRRLTESALSELAVTDGLTGLCNRRHLEEVLRV 351

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLG 176
                    + L+++  D+D+FK  ND  GH +GD V+  L+  +  +   P  VG R G
Sbjct: 352 ECARSARNQQPLALLMIDVDHFKAFNDRHGHRIGDGVLVDLAVIIRALLKRPADVGARYG 411

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI-----TISAGIAER--CH 229
           GEEFA     +       LA  LR + E  +  ++  P +       T+S G+  R    
Sbjct: 412 GEEFAVILPDTD------LAGGLR-VAEAIRARMAGRPPVGQDLRAGTVSIGVVSRILTP 464

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              +  ++  AD+ALY AK +GRNRVV  +D
Sbjct: 465 GYGVDDLVMDADKALYAAKGAGRNRVVPAAD 495


>gi|54309271|ref|YP_130291.1| hypothetical protein PBPRA2087 [Photobacterium profundum SS9]
 gi|46913703|emb|CAG20489.1| hypothetical protein PBPRA2087 [Photobacterium profundum SS9]
          Length = 1053

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 65/186 (34%), Positives = 95/186 (51%), Gaps = 15/186 (8%)

Query: 84  YIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFF--D 135
           YIS G  + E  +  +++ +L+  D L+ L N    +  +      +   K S+V F  D
Sbjct: 597 YISTGKDITERVLFESKLHKLAHYDLLTELPNRLLLLQHIEQAITNAEEMKTSVVVFNID 656

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAI 194
           +DYFK+IND+ GH VGDKV+  ++ ++         + RLGG+EFA      +S Q  A 
Sbjct: 657 LDYFKKINDSLGHDVGDKVLITIAKRITRSLRDEDVLARLGGDEFAILIQSDTSSQSIAT 716

Query: 195 LANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGR 252
           LA    +II N   ++S    S+ IT S GIA        S  ++  +D ALY AK  GR
Sbjct: 717 LA---ERIINNICASLSIEEKSLSITASMGIAVYPENSVDSDALLKNSDIALYHAKDQGR 773

Query: 253 NRVVCF 258
           NR  CF
Sbjct: 774 NR-YCF 778


>gi|331015060|gb|EGH95116.1| GGDEF domain protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 424

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 32/228 (14%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F+ L    +   +L I+   + L+   I+ ++  E +       Q++  D L+GL    A
Sbjct: 198 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 247

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
               +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        R GG
Sbjct: 248 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGRAYRYGG 307

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218
           EEFA      +  E       +R+ I N  I   N  S P                S+ +
Sbjct: 308 EEFAIVFAAKTIDECMPHLEAIRETIANYAIQLRNKDSRPQDDQQGRQRRSGAHEASVSV 367

Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           T+S G+AER   H+ P   ++  ADQALY AK +GRN VV +  +   
Sbjct: 368 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 414


>gi|313682865|ref|YP_004060603.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sulfuricurvum kujiense DSM 16994]
 gi|313155725|gb|ADR34403.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sulfuricurvum kujiense DSM 16994]
          Length = 673

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 89/171 (52%), Gaps = 17/171 (9%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y ++ +LS  D L+GL N   F   L         +  K +++  D+D FK IND +GH 
Sbjct: 252 YEKLQELSDRDYLTGLYNRRKFEEFLSYEVKRSLRHRHKFTVLMIDLDNFKYINDTYGHA 311

Query: 150 VGDKVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GD V+     ++  +FG+ +     + R+GG+EFA     +  +    +   LR  +E+
Sbjct: 312 SGDLVLK----EVTEIFGSKLRNADILARIGGDEFAVILPETPYENGYAVVEKLRASLES 367

Query: 206 SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
           + I++     + +T S GIAE   + E I +++  +D A+Y AK++G+N +
Sbjct: 368 TPISLMFD-QVSLTASFGIAEYPEQGENIESLLTGSDLAMYKAKRAGKNTI 417


>gi|313673588|ref|YP_004051699.1| diguanylate cyclase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940344|gb|ADR19536.1| diguanylate cyclase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 332

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 8/165 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           N I++LS  D ++GLLN S F+  +         Y +  S++  D D  K IND +GH  
Sbjct: 161 NLITELSITDEMTGLLNQSGFMKKIEEEFYRSQRYQKTFSVLMIDSDNLKLINDTYGHKY 220

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           G  VI  +++ +        F  R GG+EF    + +    A  +A  +RK  E      
Sbjct: 221 GSIVIKSIAEVIKTNIRRTDFAARYGGDEFILCLVETDLDGALEVAERIRKQFELKSFFT 280

Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
                  ITIS G++      + +  +I  AD+A+Y +K SG+N+
Sbjct: 281 KDEKKFTITISIGVSNYPKSGDSLMDVIELADKAMYHSKNSGKNK 325


>gi|226307945|ref|YP_002767905.1| hypothetical protein RER_44580 [Rhodococcus erythropolis PR4]
 gi|226187062|dbj|BAH35166.1| hypothetical membrane protein [Rhodococcus erythropolis PR4]
          Length = 391

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 103/210 (49%), Gaps = 13/210 (6%)

Query: 65  LVENLSLVIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           +VEN S V + + +++L+G   Y+     + +F      +  S++D L+GLLN       
Sbjct: 183 VVENYSDVPVLVALTVLVGAAIYVIPFACQFIFSILGTDALNSQLDPLTGLLNRRGLADE 242

Query: 122 LG-----SY-NEKLSIVF-FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           +      SY N  L +V   DID FK IND +GH VGD VI  +  +LV   G    + R
Sbjct: 243 VRLLLERSYANSALVVVAAVDIDRFKTINDEYGHTVGDAVIEKVGSRLVECAGPAALIAR 302

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
           +GG+EF     G  ++    L  +L++    +  +     S+ I   AG  E      I+
Sbjct: 303 IGGDEFIIVDSG-DQRSVDRLEQELQRSTVTAPGHSEVALSVGIAKVAGPFESPDDALIA 361

Query: 235 --TIIYRADQALYVAKKSGRNRVVCFSDIE 262
             T++ RAD+A+Y AK  G + VV  ++ +
Sbjct: 362 YPTLLRRADRAMYAAKARGGHSVVLLTETD 391


>gi|119468948|ref|ZP_01611973.1| putative two-component response regulator with GGDEF domain
           [Alteromonadales bacterium TW-7]
 gi|119447600|gb|EAW28867.1| putative two-component response regulator with GGDEF domain
           [Alteromonadales bacterium TW-7]
          Length = 309

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 12/174 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
            + QL+ ID L+ + N   F S L          N  LS+   D+D FK +ND +GH  G
Sbjct: 133 EVQQLANIDGLTDIFNRGYFDSYLEQEWNRCKRLNMPLSLAIIDLDDFKLLNDTYGHQQG 192

Query: 152 DKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-N 209
           D+ +  ++  L      P  +  R GGEEFA     +S ++A  + N + + +    I N
Sbjct: 193 DESLKQVAAILEQYTKRPSDICARFGGEEFALIYGNTSSEQATTVINAIVEQLRRLNICN 252

Query: 210 ISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             S PS  +T+S G+A    C    I ++I  AD  LY AK +G+N ++C +D+
Sbjct: 253 EHSLPSKTLTVSVGLASVIPCSGYTIESMIKEADDLLYKAKANGKN-LLCVADL 305


>gi|88705789|ref|ZP_01103498.1| GGDEF/EAL/PAS domain containing protein [Congregibacter litoralis
           KT71]
 gi|88699860|gb|EAQ96970.1| GGDEF/EAL/PAS domain containing protein [Congregibacter litoralis
           KT71]
          Length = 968

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 89/169 (52%), Gaps = 20/169 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAFI----SSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVG 151
           ++ Q +  D L+GL N + F      ++ S + +L   ++V+ D+D FK+IND  GH  G
Sbjct: 493 QLEQAAHYDALTGLPNRTLFFDRLDQAMASADRRLVELAVVYMDLDKFKEINDEHGHATG 552

Query: 152 DKVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206
           D+++     QL  VF + +     V RLGG+EF       +S +E   L + L   I   
Sbjct: 553 DQLL----KQLSRVFSSQIRRSDTVARLGGDEFVFLICDFNSRKECIALLDRLMSTIHEP 608

Query: 207 QINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRN 253
           +  + +G S+ ++ SAGIA       +   +++ +ADQA+Y AK  GRN
Sbjct: 609 R--VVAGISMQVSASAGIAFYSSAMDVGPDSLLRQADQAMYRAKAGGRN 655


>gi|312112576|ref|YP_003990892.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y4.1MC1]
 gi|311217677|gb|ADP76281.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y4.1MC1]
          Length = 842

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 20/160 (12%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N    I  L +       +N +++I++ D+D FK IND+FGH +GD ++  ++
Sbjct: 419 DALTDLPNRRYLIEKLKNELKKAEEHNSRIAILYLDLDNFKNINDSFGHVMGDLLLKNVA 478

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSS---EQEAAILANDLRKII--ENSQINISSGP 214
            +L ++     F+ RLGG+EFA    G+    E+ A      L + I  EN ++ I++  
Sbjct: 479 QRLTMIH-PDCFIARLGGDEFAVLLSGNDFNIEEIACKTIQSLNQPIKLENKEVFITTSV 537

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            I +    G  E        T+I  AD A+Y AKK G+N+
Sbjct: 538 GISVYPKDGDDE-------MTLIRHADMAMYDAKKKGKNQ 570


>gi|262195593|ref|YP_003266802.1| diguanylate cyclase [Haliangium ochraceum DSM 14365]
 gi|262078940|gb|ACY14909.1| diguanylate cyclase [Haliangium ochraceum DSM 14365]
          Length = 294

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 15/183 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
           ++SG  ++  +  +  I +L+ +D L+ + N   F+ SL         Y   LS++ FDI
Sbjct: 116 FLSGQNIESAY--HEEIYRLTTVDGLTQIYNKRYFMESLEREMGRAQRYRRDLSLILFDI 173

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK +ND +GH  GD V+  L+ ++         + R GGEEFA          A    
Sbjct: 174 DHFKSVNDTYGHLAGDYVLKQLAVEIKRRIRREDILARYGGEEFAIILPELDVDSAKQFG 233

Query: 197 NDLRKIIENSQINISSGPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRN 253
             +R+I E+++    +   I +TIS G+   +   H    +  I  AD+ LY AK  GRN
Sbjct: 234 EKIRRIAEDARFFFDN-TDIPVTISVGVTVLSPTVH--SAAEFIKLADEKLYEAKAEGRN 290

Query: 254 RVV 256
            VV
Sbjct: 291 CVV 293


>gi|207739719|ref|YP_002258112.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
 gi|206593101|emb|CAQ60007.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
          Length = 636

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 21/183 (11%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFIS------SLGSYN-EKLSIVFFDIDYFKQINDNFGH 148
           +  RI  L+  D L+GLLN  A         +L   N  ++S++F D+D FK IND  GH
Sbjct: 188 AQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRNGTRVSVMFLDLDRFKNINDTLGH 247

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+++  ++ +L         V RLGG+EF            ++     R++ E    
Sbjct: 248 QFGDQLLREVAARLQACAREADTVARLGGDEFVVML-------ESLDGMGTRRVAERILA 300

Query: 209 NISS-----GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF-SDI 261
            I +     G  + + +S GIA   H  +  +T++ +AD A+Y+AK+ GRN    F SD+
Sbjct: 301 AIGAPFHIEGQELFVGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNFQTFTSDL 360

Query: 262 ENN 264
           ++ 
Sbjct: 361 DDR 363


>gi|192360753|ref|YP_001982450.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107]
 gi|190686918|gb|ACE84596.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107]
          Length = 595

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 17/179 (9%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
           G  + E   S  +I  L+  D L+ L N   F       I S   +  +L+++F D+D F
Sbjct: 137 GRDITERKQSEEQIQYLATHDSLTALPNRFMFSKLLAVAIESARRHQRQLAVLFIDLDRF 196

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILAN 197
           K IND  GH  GD+++  ++++      T   VGRLGG+EF      L S +Q A +   
Sbjct: 197 KNINDTLGHDAGDQLLITMANRFRTCLRTSDIVGRLGGDEFVILLPELESHDQAARVAQK 256

Query: 198 DLRKIIENSQINISSGPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRN 253
            L   I+   ++   G    +T S GI    E    E    ++  AD A+Y AK+ G+N
Sbjct: 257 ILSAAIQPLDVH---GQECRVTASIGICLYPEDAEDE--QALMKNADIAMYRAKEEGKN 310


>gi|332305295|ref|YP_004433146.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172624|gb|AEE21878.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 684

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 89/170 (52%), Gaps = 13/170 (7%)

Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I Q +  D L+ L N        S  +       EK++++F D+D FK++ND+ GH VGD
Sbjct: 254 IRQHAYFDSLTSLPNRFLSLDRLSQMLKEAQRSKEKVALLFLDLDDFKKVNDSLGHEVGD 313

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII-ENSQINI 210
           K++  ++++L +       VGRLGG+EF       + + +A  +A +L +I  E  +I+ 
Sbjct: 314 KLLKEVANKLTLALRKADTVGRLGGDEFIVLLRSLTGDSDAIDIAENLLEIFREPFEID- 372

Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             G  + +T+S GI       +  S ++  AD A+Y +K SGRN    F+
Sbjct: 373 --GKELVLTLSIGIVTYTKNGDSASDLLRHADAAMYQSKLSGRNTYSFFT 420


>gi|330873360|gb|EGH07509.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 397

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 23/211 (10%)

Query: 68  NLSLVIISITISLLLGYI--SGSILKELFISYNRISQL-----SRIDCLSGLLNHSAFIS 120
           N  L + ++ + L+  Y     S +  LF    R+ Q+     +R D L+ L N      
Sbjct: 191 NAVLFVSTVALLLMASYFLERASRMSYLFALRGRLLQVQLMEFARTDGLTRLFNRRYQDE 250

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            + S  E+       ++I+  DID+FK  NDN+GHP GD  +  L  ++         V 
Sbjct: 251 VMTSVWERARKTPANVAIILLDIDHFKSYNDNYGHPQGDTCLKLLCQKIQQSAHENDAVA 310

Query: 174 -RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKE 231
            R GGEE      G + Q A  +A+ L+  +   ++ +   G S  +T+S G+A  C   
Sbjct: 311 FRFGGEEVLVLMNGDAGQ-AREMADVLQAAVAALKLPHPVLGESAFVTVSLGVA--CATA 367

Query: 232 PIST---IIYRADQALYVAKKSGRNRVVCFS 259
           P +T   +I  AD ALY AK++GRN  VCF+
Sbjct: 368 PQTTADHLISAADNALYAAKRAGRN-CVCFA 397


>gi|306845952|ref|ZP_07478519.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1]
 gi|306273587|gb|EFM55432.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1]
          Length = 236

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 112/228 (49%), Gaps = 23/228 (10%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY- 97
           IAT+I I+       G+    G++   V  L  +++   I++ LG    S L+EL  SY 
Sbjct: 18  IATIISIS----LSTGIRFAIGVKSDTVTILVRLLLPFLIAMPLGVFWFSRLEELERSYR 73

Query: 98  ------NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFGH 148
                 N +++++ +D L+GLLN  +FI    + N+     +F   D+DY KQIND +GH
Sbjct: 74  TAVKRANELARVASVDPLTGLLNRRSFIQQFNAANKAGVRGWFLIVDVDYLKQINDQYGH 133

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILAN-DLRK--IIE 204
           P GD  I  ++  L     +   + R+GG+EF A    G+     ++L++  LR   ++ 
Sbjct: 134 PAGDDAIIAVAQALEDCLSSDSLIARIGGDEFCAFVPKGAINDVDSVLSDISLRADGLLR 193

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             + N+ S     +T+S G       +    ++  AD+ LY  KKS R
Sbjct: 194 EKRPNVGS----SLTVSVGRISCKTGQIFEEVLSIADEQLY-RKKSLR 236


>gi|269963914|ref|ZP_06178226.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831401|gb|EEZ85548.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 445

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 26/169 (15%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++L+  D L+G +N  A  + L          ++  SI++ D+D FK++ND +GH +GD 
Sbjct: 275 AELAHRDALTGAMNRHAVQNWLEQQARQVRWGHDSFSILYMDLDKFKRVNDKYGHQMGDD 334

Query: 154 VIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           ++     + V+V  + +       R GGEEF      +  ++A   A  +R+       N
Sbjct: 335 ILR----EFVMVIASSIQPDDRLVRWGGEEFVVFCPNTDIEQAVKKAEVVRQ-------N 383

Query: 210 ISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +     +H   +T S G+A+    E +S  + RAD+ LY+AK++GRNR+
Sbjct: 384 VEKHLWVHGESLTCSIGVAQ-MQNERVSETMARADEVLYLAKRNGRNRI 431


>gi|257481934|ref|ZP_05635975.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|331008794|gb|EGH88850.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 397

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 23/211 (10%)

Query: 68  NLSLVIISITISLLLGYI--SGSILKELFISYNRISQL-----SRIDCLSGLLNHSAFIS 120
           N  L + ++ + L+  Y     S +  LF    R+ Q+     +R D L+ L N      
Sbjct: 191 NAVLFVSTVALLLMASYFLERASRMSYLFALRGRLLQVQLMEFARTDGLTRLFNRRYQDE 250

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            + S  E+       ++I+  DID+FK  NDN+GHP GD  +  L  ++         V 
Sbjct: 251 VMTSVWERARKTPADVAIILLDIDHFKSYNDNYGHPQGDTCLKLLCQKIQQSAHENGAVA 310

Query: 174 -RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKE 231
            R GGEE      G + Q A  +A+ L+  +   ++ +   G S  +T+S G+A  C   
Sbjct: 311 FRFGGEEVLVLMNGDAGQ-AREMADVLQAAVAALKLPHPVLGESAFVTVSLGVA--CATA 367

Query: 232 PIST---IIYRADQALYVAKKSGRNRVVCFS 259
           P +T   +I  AD ALY AK++GRN  VCF+
Sbjct: 368 PQTTADHLISAADNALYAAKRAGRN-CVCFA 397


>gi|239623532|ref|ZP_04666563.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521563|gb|EEQ61429.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 465

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 14/174 (8%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +R+D L+GL N  A    +  + E     +  ++F D+D FK IND  GH  GD  +  +
Sbjct: 290 ARVDSLTGLYNRQAICREISRFLESPACSRAVLLFMDLDDFKNINDTMGHRSGDYALRCV 349

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +D           VGR+GG+EF A   G S+E+     A  L + + + +     G  + 
Sbjct: 350 ADLFRHTLRATDMVGRVGGDEFVALLTGISAEKGGVECAKRLCEAVSSMEDPNMGGLKLS 409

Query: 218 ITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFS---DIENNTC 266
            +I   +   C K+     T+  +AD A Y AK+ G+NR V ++   +++N  C
Sbjct: 410 CSIGGAV---CPKDGNDYDTLFVKADTAAYEAKRQGKNRYVFYTPGLELKNGYC 460


>gi|71280493|ref|YP_268488.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71146233|gb|AAZ26706.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 418

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 99/186 (53%), Gaps = 18/186 (9%)

Query: 86  SGSILKELFISYNR----ISQLSRIDCLSGLLNHSAFIS-SLGSYNE-----KLSIVFFD 135
           S ++ KEL +        +++L+  D L+ + N   F   S    N+      ++++F+D
Sbjct: 226 SNNLTKELELKVEERTLLLNELAYTDALTKIANRRYFDEVSKAMINDVDPILPIALIFYD 285

Query: 136 IDYFKQINDNFGHPVGDK-VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           +DYFK +ND FGH +GD+ ++A ++     +     F  R+GG+EFA      S+ E   
Sbjct: 286 LDYFKAVNDCFGHDIGDECLVAVVNAVSKALRQKSDFHARIGGDEFAIILKNVSKDE--- 342

Query: 195 LANDLRKIIENSQ-INISSGPSIHITISAG---IAERCHKEPISTIIYRADQALYVAKKS 250
           L   + +I++N + +NI + P++ +T S G   I +      I+ ++  ADQALY AK  
Sbjct: 343 LEKIIVRILDNIRLVNIPNEPTLSLTCSIGSSFITKFSEGTTINQVLKVADQALYQAKNQ 402

Query: 251 GRNRVV 256
           GRN+ V
Sbjct: 403 GRNQWV 408


>gi|320330295|gb|EFW86280.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|320330351|gb|EFW86331.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 367

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 23/211 (10%)

Query: 68  NLSLVIISITISLLLGYI--SGSILKELFISYNRISQL-----SRIDCLSGLLNHSAFIS 120
           N  L + ++ + L+  Y     S +  LF    R+ Q+     +R D L+ L N      
Sbjct: 161 NAVLFVSTVALLLMASYFLERASRMSYLFALRGRLLQVQLMEFARTDGLTRLFNRRYQDE 220

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            + S  E+       ++I+  DID+FK  NDN+GHP GD  +  L  ++         V 
Sbjct: 221 VMTSVWERARKTPANVAIILLDIDHFKSYNDNYGHPQGDTCLKLLCQKIQQSAHENDAVA 280

Query: 174 -RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKE 231
            R GGEE      G + Q A  +A+ L+  +   ++ +   G S  +T+S G+A  C   
Sbjct: 281 FRFGGEEVLVLMNGDAGQ-AREMADVLQAAVAALKLPHPVLGESAFVTVSLGVA--CATA 337

Query: 232 PIST---IIYRADQALYVAKKSGRNRVVCFS 259
           P +T   +I  AD ALY AK++GRN  VCF+
Sbjct: 338 PQTTADHLISAADNALYAAKRAGRN-CVCFA 367


>gi|296101147|ref|YP_003611293.1| diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295055606|gb|ADF60344.1| diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 325

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 7/183 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQ 141
           +  +L  L      ++ LS +D L+GL N     S L +     N +  ++  DID+FK 
Sbjct: 142 AQELLSRLLEERETLTDLSMMDPLTGLYNRRGLQSRLENLPAVENGEHFVLLMDIDHFKA 201

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            ND++GH +GD+ +  +S  +     +   V R GGEEF       S + A   A  +R+
Sbjct: 202 YNDHYGHMMGDQALIRVSAAIRDAVRSRDIVARFGGEEFMVLLTNISLEHARQTAERIRQ 261

Query: 202 IIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + + +I    +   + ++TIS GIA     E     + +AD+ALY AK  GRN ++   
Sbjct: 262 KVYDLKIPHMFNERVATNVTISIGIAI-FENEDAEGALEKADKALYEAKHLGRNNILLSE 320

Query: 260 DIE 262
           +++
Sbjct: 321 ELQ 323


>gi|238782711|ref|ZP_04626741.1| Diguanylate cyclase [Yersinia bercovieri ATCC 43970]
 gi|238716371|gb|EEQ08353.1| Diguanylate cyclase [Yersinia bercovieri ATCC 43970]
          Length = 400

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 88/169 (52%), Gaps = 17/169 (10%)

Query: 107 DCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N + F   L         ++  +++F D D FK+IND++GH  GD V+  ++D
Sbjct: 228 DSLTGLANRAFFEGRLSRTLNDCKSDQHAAVLFLDGDRFKEINDSYGHAAGDVVLTTIAD 287

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIE--NSQINISSGPSIH 217
           ++  +      V RLGG+EFA       E  +  I+AN+   IIE  +  I ++ G  I 
Sbjct: 288 RIRALLRETDLVARLGGDEFAVLLAPIHETDDVLIIANN---IIESMSQPIILADGIEIT 344

Query: 218 ITISAGIA-ERCHKEPISTIIYRADQALYVAKK----SGRNRVVCFSDI 261
            ++S GIA    H +    ++ RAD+A+Y AKK    SG   +   SDI
Sbjct: 345 TSLSIGIAIYPDHAQTPEELLQRADEAMYHAKKNFQSSGGRAIAQPSDI 393


>gi|28867734|ref|NP_790353.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28850969|gb|AAO54048.1| GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 431

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 32/228 (14%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F+ L    +   +L I+   + L+   I+ ++  E +       Q++  D L+GL    A
Sbjct: 205 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 254

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
               +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        R GG
Sbjct: 255 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGRAYRYGG 314

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218
           EEFA      +  E       +R+ I N  I   N  S P                S+ +
Sbjct: 315 EEFAIVFAAKTIDECMPHLEAIRETIANYAIQLRNKDSRPQDDQQGRQRRSGAHEASVSV 374

Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           T+S G+AER   H+ P   ++  ADQALY AK +GRN VV +  +   
Sbjct: 375 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 421


>gi|90426096|ref|YP_534466.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
 gi|90108110|gb|ABD90147.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
          Length = 915

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 56/168 (33%), Positives = 81/168 (48%), Gaps = 16/168 (9%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHP 149
           S  RI+ L+  D L+ L N ++F   +    E+      L++++ DID FK IND+ GHP
Sbjct: 471 SEERIAYLAHYDELTSLPNRTSFRERIEDEFERVARGGTLALLYIDIDEFKAINDSLGHP 530

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QE----AAILANDLRKIIE 204
           VGD ++  ++ +L        FV RLGG+EFA       + QE     A L   +R   E
Sbjct: 531 VGDALLKIVAARLKACLRETDFVARLGGDEFAILQTAPRDVQEVTELVARLFETIRAPCE 590

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
                IS+  SI I ++       H      +I  AD A+Y AK  GR
Sbjct: 591 CLGHQISTDASIGIALAPP-----HGTDTDQLIKNADLAMYQAKADGR 633


>gi|327188457|gb|EGE55671.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 709

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 90/176 (51%), Gaps = 23/176 (13%)

Query: 98  NRISQLSRI-------DCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNF 146
            R+ QL++        D LSGLLN    +S L   ++  S    +   D+D FK +ND +
Sbjct: 281 RRLRQLAQAALYEAGHDSLSGLLNRQGLLSLLEELDDTASSPPRLYLVDLDGFKAVNDAW 340

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS---EQEAAILANDLRKII 203
           GH VGD +I  +S  L+V     +   RLGG+EFA   +G +   E E AILA       
Sbjct: 341 GHAVGDDLIRLVSKALMVCHPEVVAAARLGGDEFALVHVGPATCEEMERAILA----LFA 396

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           E  +I+   G +I +  S G A R    EP+  ++ RAD ALY AK +GR + + +
Sbjct: 397 EPFKID---GRTIEVGASIGAATRDGDIEPLE-LLRRADMALYRAKANGRGQAIEY 448


>gi|315499329|ref|YP_004088133.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Asticcacaulis excentricus CB 48]
 gi|315417341|gb|ADU13982.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Asticcacaulis excentricus CB 48]
          Length = 622

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 86/181 (47%), Gaps = 16/181 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQIN 143
           + E  ++   I +++  D L+ L N + F   L             +I+  D+D FK +N
Sbjct: 182 ITESHLARATIERMANFDALTELANRNLFQKRLADLVARASARSMAAILSLDLDRFKAVN 241

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILAND 198
           D +GH VGD ++A ++ +LV V        RLGG+EFA      +A   + Q A  L + 
Sbjct: 242 DLYGHGVGDALLAKVARRLVDVLRPGDLAARLGGDEFAVLLEKVSAHHDAHQVAKRLVSH 301

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           L    E   + I  G S+ I       +  H  PI  ++  ADQALY AK+SGRN +  +
Sbjct: 302 LSAPYEIDGLEIVIGASVGIE----FIDDPHAAPID-LMRHADQALYAAKRSGRNDIAVY 356

Query: 259 S 259
            
Sbjct: 357 D 357


>gi|260902134|ref|ZP_05910529.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|308109945|gb|EFO47485.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 652

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 16/171 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D L+GL N S F       +   G   ++ ++++ D+D FK+IND +GH  G
Sbjct: 479 RLEYLAHHDALTGLANRSKFHLELEDLVQRSGYQRDEFAVLYLDLDGFKEINDTYGHDAG 538

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK----IIENSQ 207
           D+V+  ++D+L         + RL G+EF      ++++    +A  L +     IE   
Sbjct: 539 DEVLKRVADRLTSATRHSDLIARLSGDEFVMLVNPANQKVVTRIAEQLLESICAPIEYKG 598

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +  G SI + +  G+ ER      + I+  AD A+Y AKK+G+ + +  
Sbjct: 599 NELKVGVSIGVKL-VGVNER----DATRILKSADTAMYQAKKAGKGQAILM 644


>gi|261405817|ref|YP_003242058.1| diguanylate cyclase [Paenibacillus sp. Y412MC10]
 gi|261282280|gb|ACX64251.1| diguanylate cyclase [Paenibacillus sp. Y412MC10]
          Length = 529

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 6/179 (3%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDY 138
           L  I G+  + +      + Q +  D L+GL N       L S++   E  +++  DID+
Sbjct: 349 LNRIMGAAAETMAKQTQSLQQEAITDPLTGLSNRRELERCLESWDALGEPYAVILLDIDH 408

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND +GH  GD+++  ++  +V          R GGEEF       S   A  +A  
Sbjct: 409 FKAINDTYGHQTGDQILKLVAAVMVHCAPADAVCSRFGGEEFVILLRERSLDTAYRMAER 468

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +R+ I  S    S   ++ I +S       ++E    +   AD ALY AK  GRNR V 
Sbjct: 469 IRRAILVSPTPYSGTLTVSIGVSLYPEHGGNRE---DVFQAADMALYRAKGEGRNRTVA 524


>gi|148284174|ref|YP_001248264.1| response regulator PleD [Orientia tsutsugamushi str. Boryong]
 gi|146739613|emb|CAM79396.1| PleD-like response regulator, receivor domain/GGDEF domain
           [Orientia tsutsugamushi str. Boryong]
          Length = 489

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 82/168 (48%), Gaps = 11/168 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           NR++ L+  D L+ + N   F       I+     N+ L ++  D D+FK +ND +GH V
Sbjct: 318 NRLN-LAAKDGLTNIFNRRYFDSHINQLINDAKDSNKSLFLIMIDFDHFKMVNDIYGHQV 376

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEF--AAAALGSSEQEAAILANDLRKIIENSQI 208
           GD+V+      +         + R GGEEF          +Q+A  LAN ++  IE    
Sbjct: 377 GDEVLKASVKIIETNIRVTDLIARYGGEEFIITIYDDDIDQQKAIALANRIKIKIETHNF 436

Query: 209 NISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            IS+    +  TIS GI E    E  + +I R D+ALY AK  GRN+V
Sbjct: 437 IISNLKLQLKQTISIGITEYDPPEDANALISRTDKALYNAKHYGRNQV 484


>gi|126740131|ref|ZP_01755821.1| diguanylate cyclase, putative [Roseobacter sp. SK209-2-6]
 gi|126718950|gb|EBA15662.1| diguanylate cyclase, putative [Roseobacter sp. SK209-2-6]
          Length = 598

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 77/166 (46%), Gaps = 8/166 (4%)

Query: 98  NRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +++   S  D L+GL N          FI+S     + LS+V  D+D+FK+ NDN GH  
Sbjct: 401 DQLQDQSVRDPLTGLFNRRHMNDSLRKFINSSQHSGKTLSLVAVDVDHFKKFNDNHGHDA 460

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  +   +           R GGEEF     G S ++    A  LR+ IE   +  
Sbjct: 461 GDMVLRAVGSVMEQTCEGDQIACRPGGEEFTLILPGLSREDVMTKAELLRQSIEAIVVRY 520

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV 255
                  ITIS G+A       +   + R AD+ALY AK  GRN++
Sbjct: 521 GDKSLPRITISLGVAHYPANGAMPQELLRSADEALYEAKAKGRNQI 566


>gi|186474063|ref|YP_001861405.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phymatum STM815]
 gi|184196395|gb|ACC74359.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phymatum STM815]
          Length = 666

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 17/185 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           SG+ + +   +  R+S+L+  D L+GL N +A        I+S    N  + I+F D+D 
Sbjct: 219 SGTDITKERNAQERLSELANTDSLTGLPNRNAIHDKTRAAIASAAPGN-AVGILFLDLDN 277

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAI 194
           FK++ND++GH  GD++I  +S  +         + RLGG+EF      A + S E  A  
Sbjct: 278 FKKVNDHYGHVFGDRLIQDVSSAVRECLDGADTLARLGGDEFIVLSPVATVASMEAMAQR 337

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +   LR       + + +G SI I +     E  H + +  +I  AD A+YVAK  G+  
Sbjct: 338 ILERLRMPFSLGLVEVYTGCSIGIAM---FPE--HGDSLEALIRAADTAMYVAKDDGKRT 392

Query: 255 VVCFS 259
              FS
Sbjct: 393 YRVFS 397


>gi|154245372|ref|YP_001416330.1| diguanylate cyclase [Xanthobacter autotrophicus Py2]
 gi|154159457|gb|ABS66673.1| diguanylate cyclase [Xanthobacter autotrophicus Py2]
          Length = 424

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 13/167 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQINDNFGH 148
           Y  + Q SR D L+ +L H   +  LG        +    +S++  D+D FK +ND  GH
Sbjct: 248 YEDLKQESRRDPLTNVL-HRGQLEPLGRDLLAVARTTGRPVSLLLIDVDDFKDVNDQLGH 306

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           P GD+V+  L+  L         V R GG+EFA  A G     A  LA  L + +    +
Sbjct: 307 PTGDEVLRRLARGLTESLRQADHVVRYGGDEFAVFAPGVGNAGALSLAAQLGRRV--GAM 364

Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
            +  G +   T+S GIA        ++ ++  AD+ LY AK +GRNR
Sbjct: 365 TLPPGVARQ-TLSIGIASAPEDGSTLTELLDAADKRLYAAKAAGRNR 410


>gi|260596360|ref|YP_003208931.1| hypothetical protein CTU_05680 [Cronobacter turicensis z3032]
 gi|260215537|emb|CBA27720.1| hypothetical protein CTU_05680 [Cronobacter turicensis z3032]
          Length = 595

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 87/171 (50%), Gaps = 17/171 (9%)

Query: 98  NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           + +++ +  D L+GL N         A IS   +    +S +  DIDYFK +ND +GH  
Sbjct: 421 DELTEKAMFDSLTGLRNRYHLEDALHACISQAEATGSPVSCLMIDIDYFKALNDQYGHDA 480

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  ++  +  V G    V R GGEEF     G ++ +A  LA   R + +  ++++
Sbjct: 481 GDAVLKDVARTIRTVPGDTAQVFRYGGEEFLVLLPGMAQAQAHALAT--RMLTQVGELSL 538

Query: 211 SS-----GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                  GP   +++S G+A         +++  AD ALY+AK+ GR+R+V
Sbjct: 539 RYNGQELGP---VSVSIGLATWPDHARRESLVKNADIALYLAKEMGRSRIV 586


>gi|218708990|ref|YP_002416611.1| sensory box/GGDEF family protein [Vibrio splendidus LGP32]
 gi|218322009|emb|CAV18043.1| sensory box/GGDEF family protein [Vibrio splendidus LGP32]
          Length = 827

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 13/172 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151
            +S L+  D L+GL N +A   S     E       K++++F D+D FK IND  GH  G
Sbjct: 389 ELSYLAHHDSLTGLYNRTALKESFAVIQERNIQNTTKIAVLFIDLDDFKNINDAHGHAYG 448

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQIN 209
           D+++  ++  L  +        R GG+EF A    L ++E    IL N +++ IE S  N
Sbjct: 449 DQLLKNIAQTLQHLTEPNEMYFRFGGDEFIAIIDNLPTAESLTPIL-NKIKQAIERS-YN 506

Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           I  G S+ I  S G++    H + I  +I +AD ALY AK++ +  +  F++
Sbjct: 507 I-KGESLSIKTSIGVSLSPDHADNIEMLISKADMALYFAKRTSKGIIQLFNE 557


>gi|153206889|ref|ZP_01945707.1| diguanylate cyclase (GGDEF) domain/cyclic diguanylate
           phosphodiesterase (EAL) domain protein [Coxiella
           burnetii 'MSU Goat Q177']
 gi|120576962|gb|EAX33586.1| diguanylate cyclase (GGDEF) domain/cyclic diguanylate
           phosphodiesterase (EAL) domain protein [Coxiella
           burnetii 'MSU Goat Q177']
          Length = 432

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 83/158 (52%), Gaps = 13/158 (8%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N   FI  L        S + KLS++F D+D FK IND  GH +GD+V+  +S
Sbjct: 5   DQLTSLPNRREFIHRLNEEIGKPKSVDSKLSLLFLDLDNFKDINDALGHHMGDRVLVHVS 64

Query: 160 DQLVVVFGTPM--FVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSI 216
           D+L  +  +P+  F+G LGG+EF         +++A + A  +      S   I +   +
Sbjct: 65  DRLRKLDLSPLNYFLGHLGGDEFVILLKDLQQDKDATLCAKKISNAFSES-FKIKNF-LL 122

Query: 217 HITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
           ++  S GI  +   K    T++ +AD A+Y AKK GRN
Sbjct: 123 YVNFSIGITIDFYSKTDSETLLKKADMAMYQAKKKGRN 160


>gi|189424661|ref|YP_001951838.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
 gi|189420920|gb|ACD95318.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
          Length = 805

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 9/179 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           + E  ++   + +L+  D L+GL N       L          N + +++F D+D FK I
Sbjct: 351 ITERNLAQRELIKLAHHDVLTGLPNRILLHDRLQQARAFAHRMNSRFALLFLDMDRFKII 410

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH VGD ++  ++ +L   F     V R+GG+EF    L  +++      ND + +
Sbjct: 411 NDTLGHAVGDDLLRMIAQRLKACFRETDTVARIGGDEFVVLMLNVTDRTDICTLND-KLL 469

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
            E +Q  +  G  + +T S G+      E  +  ++ +AD A+Y AK  GRN +  ++D
Sbjct: 470 QELAQPFMIRGHELFVTTSGGVCTYPDDEDDVEIMMQKADIAMYHAKALGRNNIQFYND 528


>gi|150017708|ref|YP_001309962.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Clostridium beijerinckii NCIMB 8052]
 gi|149904173|gb|ABR35006.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Clostridium beijerinckii NCIMB 8052]
          Length = 792

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 16/172 (9%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDN 145
           +K+  ++  +I      D L+ + N    + +    L + ++K +I+F D+D FK INDN
Sbjct: 358 IKDKILAEEKIRHYVYYDALTEIPNRKMMLENINELLKNKDKKFAILFIDLDDFKNINDN 417

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE------AAILANDL 199
           FGH VGDKV+  ++  L    G    + R+GG+EF    L + E +      A  +  +L
Sbjct: 418 FGHQVGDKVLKKVASTLKDSIGPQDIISRIGGDEF-IIILKNVESDIYIKEIALRIQKEL 476

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           +K I  ++ ++  G SI I+I        H E   T+I  AD A+Y  KK+G
Sbjct: 477 KKPITYNEESLILGASIGISIFQE-----HGEDSDTLINNADLAMYEVKKNG 523


>gi|323528337|ref|YP_004230489.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Burkholderia sp. CCGE1001]
 gi|323385339|gb|ADX57429.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1001]
          Length = 922

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 11/178 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIND 144
           S L EL  S +R+ + +R D L+ L N  A    I    +   + +++F D+D+FK IND
Sbjct: 473 SDLTELVDSRDRLVRQARRDALTELPNRVALRELIKEAIATRREFALLFMDLDHFKDIND 532

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH  GD+++  ++ +L+   G      R GG+EF   ++  S QE   L+  L +I +
Sbjct: 533 SLGHAAGDRLLREVARRLLAAIGNDGTATRYGGDEF--VSMLDSPQENGRLSALLGRIGQ 590

Query: 205 NSQINIS-SGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCF 258
             +  +      + + +S GIA  C+        T++  AD A+Y AK  GRNRV  F
Sbjct: 591 AFEHPVQIDDVQLRVQLSTGIA--CYPADGLDADTLLKHADLAMYDAKAHGRNRVERF 646


>gi|296134546|ref|YP_003641788.1| 7TM domain sensor diguanylate cyclase [Thiomonas intermedia K12]
 gi|295794668|gb|ADG29458.1| 7TM domain sensor diguanylate cyclase [Thiomonas intermedia K12]
          Length = 591

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 14/206 (6%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129
           +L  + + ++L+L Y     + +L     R+  L   D L+GLLN +    S     ++ 
Sbjct: 375 ALQWVLVFLALVLTYGLSVRVAQLRERATRLQDLLLKDPLTGLLNRNGLFDSGQRQLDRT 434

Query: 130 -------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                  ++++ D+D  K+IND FGH  GD +I   S +L   FG      RLGG+EFA 
Sbjct: 435 QDSQAFAAVLWLDLDGLKRINDQFGHAAGDALIQATSARLREAFGPDAVCARLGGDEFAV 494

Query: 183 AALGSSEQEAAILANDL-RKIIENSQINIS-SGPSIHITISAGIA-ERCHKEPISTIIYR 239
                    +  LA DL R  +E  +   + SG     + S G+A    H + +  ++  
Sbjct: 495 VL---PNLPSPRLAEDLARHALERLRAPYALSGREFRASGSIGVALYPSHAQTLEELLRL 551

Query: 240 ADQALYVAKKSGRNR-VVCFSDIENN 264
           AD A+Y AK  GR+  VV  SD+E +
Sbjct: 552 ADVAMYRAKALGRDTYVVWESDMEAD 577


>gi|167746321|ref|ZP_02418448.1| hypothetical protein ANACAC_01030 [Anaerostipes caccae DSM 14662]
 gi|167654314|gb|EDR98443.1| hypothetical protein ANACAC_01030 [Anaerostipes caccae DSM 14662]
          Length = 476

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 16/154 (10%)

Query: 107 DCLSGLLNHSAFISSLGS---YNEKLSIVFF-DIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+G++N   F   L      N+K    FF D+D FK+IND +GH  GD+V+  ++  L
Sbjct: 329 DVLTGVINRKYFQKLLEKDLKRNKKYRACFFLDVDDFKRINDTYGHQKGDEVLTAVARHL 388

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEA--AILANDLRKIIENSQINISSGPSIHITI 220
                    V R GG+EF     G +E+E    I    LR++             +H+ I
Sbjct: 389 EKNLREKDVVSRYGGDEFTCLIYGITEKEKIREIAGRILREVT----------GKVHVNI 438

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           S GI      +    II RAD ALY AK  G+N+
Sbjct: 439 SMGITLIQDNDSYEQIIERADGALYEAKVRGKNQ 472


>gi|126725726|ref|ZP_01741568.1| sensory box/GGDEF domain/EAL domain protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126704930|gb|EBA04021.1| sensory box/GGDEF domain/EAL domain protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 837

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 4/167 (2%)

Query: 98  NRISQLSRIDCLSGLLNHSAFIS--SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           N++  L   D L+GL +   F    S G   +   +  FD+D+FK +ND++GH  GD ++
Sbjct: 389 NQLQMLVNQDELTGLYSRRGFKDRYSDGMRKKTAGVYIFDLDHFKSVNDSYGHEAGDALL 448

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
           + +   +  +  T     RLGGEEFA        +EA    + LR  +E + +   + P 
Sbjct: 449 SAMGQTMKRLTETNGCAARLGGEEFAIIRPWQGWEEAKEFGDALRLALEQTVVVRGARP- 507

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           I  T S GIA     E +S  +  AD     AKK GRN +VC S+ E
Sbjct: 508 ISRTASIGIAMLPVSEALSDAMRLADDFAREAKKRGRN-MVCASEEE 553


>gi|119478352|ref|ZP_01618360.1| sensory transduction protein kinase [marine gamma proteobacterium
           HTCC2143]
 gi|119448561|gb|EAW29807.1| sensory transduction protein kinase [marine gamma proteobacterium
           HTCC2143]
          Length = 413

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 26/180 (14%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +++  D L+GLL   A    L     + +I   DID+FK+ ND  GH VGD V+  +++ 
Sbjct: 234 EMAYQDELTGLLGRRALNEKLSGLGNRYAIAMIDIDHFKKFNDTHGHDVGDDVLKVVANH 293

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI----------- 210
           +    G  +   R GGEEF     G S +        +R+ I + +I +           
Sbjct: 294 IAETTGGGIPY-RYGGEEFCVVFPGKSLKPCIPHLEAVREAIGSHRITLRDRKNRPKSAQ 352

Query: 211 -------------SSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVV 256
                          G ++ +TIS G+AER     +   ++  AD+ALY AK++GRN  V
Sbjct: 353 TGAQKRAGTRTKARQGKTVSVTISIGVAERTDVVDMPDQVMKNADKALYKAKQNGRNCTV 412


>gi|119470965|ref|ZP_01613549.1| GGDEF domain protein [Alteromonadales bacterium TW-7]
 gi|119445987|gb|EAW27267.1| GGDEF domain protein [Alteromonadales bacterium TW-7]
          Length = 386

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 11/167 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYN--------EKLSIVFFDIDYFKQINDNFGHP 149
             + +L+  D L+  +N   F   +G           + +S++++DID FK IND +GH 
Sbjct: 215 QEMQKLATTDMLTKCINRRGFYE-IGEQKLQTHLNCLQHVSLIYWDIDSFKNINDEYGHA 273

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+   + ++           R+GGEEF       SEQ+    A  LR  + +  I 
Sbjct: 274 GGDEVLIQATKRIRACLNKDDIFARIGGEEFVILIARDSEQKTQQFAETLRTQLCSRPIE 333

Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++   I +T S G+   +     I   I  AD+ALYVAK  G+N+V
Sbjct: 334 YNT-QQIEVTASFGVVIIKSANTLIDKAIDLADKALYVAKHEGKNKV 379


>gi|116331560|ref|YP_801278.1| two-component response regulator [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116125249|gb|ABJ76520.1| two-component response regulator [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 409

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 11/167 (6%)

Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I ++S++D L+ L N          F+     Y   L+++  D+DY K+IND++GH  GD
Sbjct: 223 IEKISKVDELTKLYNRRYLIEQFELFLKRAQRYRFSLAMIILDMDYLKEINDSYGHLAGD 282

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN--I 210
             +  +SD +           R+GG+EF        + +   L   LR  +   +++   
Sbjct: 283 LALRTISDVMKQRVRATDICSRIGGDEFCILLDAIKKDDLVQLCEKLRMEVAEKELSYRT 342

Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
            SG  + I++S G       E  S   I +  D ALY +KK GRNRV
Sbjct: 343 PSGDPVKISVSIGACILSPMEEFSFDDIYHSIDSALYESKKKGRNRV 389


>gi|326795280|ref|YP_004313100.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
 gi|326546044|gb|ADZ91264.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
          Length = 664

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 97/190 (51%), Gaps = 15/190 (7%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           +S + + EL  +  R  Q++  D L+ L N  +        +         LSI F D+D
Sbjct: 221 VSATDVSELKAAEARAHQIAYTDALTKLPNRRSLTRIFERVVKQASQKGRLLSIQFLDLD 280

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK IND  GH  GDKV+  ++ +L  +      + RLGG+EF    + + EQ  AI  +
Sbjct: 281 EFKAINDTLGHKQGDKVLIEIAHRLRSMVKVDDEIVRLGGDEF-LLFIQADEQSDAIRLS 339

Query: 198 DLRKIIENSQINIS-SGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           D  +++ N    I+    +I IT S GIA  E+   + I T++  AD A+Y AK +GRN+
Sbjct: 340 D--EVLSNLSHPITLEDANIKITPSIGIAFYEK-EGDTIDTLMQCADIAMYCAKSAGRNQ 396

Query: 255 VVCF-SDIEN 263
              F SD+++
Sbjct: 397 HCVFKSDMKS 406


>gi|324329298|gb|ADY24558.1| hypothetical protein YBT020_26680 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 892

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 90/177 (50%), Gaps = 13/177 (7%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 453 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQTSANDVAVMFLDLDRFKKINDR 512

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIE 204
            GH VGD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  I+ 
Sbjct: 513 LGHDVGDLLLIEVAKRLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILTIL- 571

Query: 205 NSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           N    I     + IT S GIA    C  + ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 572 NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTELMKNADMAMYRAKANGKNRFVFFS 626


>gi|320325957|gb|EFW82016.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 397

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 23/211 (10%)

Query: 68  NLSLVIISITISLLLGYI--SGSILKELFISYNRISQL-----SRIDCLSGLLNHSAFIS 120
           N  L + ++ + L+  Y     S +  LF    R+ Q+     +R D L+ L N      
Sbjct: 191 NAVLFVSTVALLLMASYFLERASRMSYLFALRGRLLQVQLMEFARTDGLTRLFNRRYQDE 250

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            + S  E+       ++I+  DID+FK  NDN+GHP GD  +  L  ++         V 
Sbjct: 251 VMTSVWERARKTPANVAIILLDIDHFKSYNDNYGHPQGDTCLKLLCQKIQQSAHENDAVA 310

Query: 174 -RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKE 231
            R GGEE      G + Q A  +A+ L+  +   ++ +   G S  +T+S G+A  C   
Sbjct: 311 FRFGGEEVLVLMNGDAGQ-AREMADVLQAAVAALKLPHPVLGESAFVTVSLGVA--CATA 367

Query: 232 PIST---IIYRADQALYVAKKSGRNRVVCFS 259
           P +T   +I  AD ALY AK++GRN  VCF+
Sbjct: 368 PQTTADHLISAADNALYAAKRAGRN-CVCFA 397


>gi|295093455|emb|CBK82546.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain/uncharacterized
            domain HDIG [Coprococcus sp. ART55/1]
          Length = 1039

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 7/191 (3%)

Query: 70   SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---- 125
             +VI+ ++ +  L  ++ +   +  +         R D L+GLLNH+AF S +       
Sbjct: 844  EIVIVDVSSTYALKMLTDAEQNKADVRLRNWENTYRTDPLTGLLNHAAFRSDMEQRLLEC 903

Query: 126  NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
                 ++  D+D FKQ ND +GH  GDK +  ++  L        +  R+GG+EFAA   
Sbjct: 904  THTAVMIMMDVDRFKQYNDTYGHHNGDKFLVLVAQTLQAALRGDDYACRMGGDEFAAMLF 963

Query: 186  GSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQAL 244
             +      ++    ++I +   + + +      I++ A IA    +   + +   AD AL
Sbjct: 964  FNKSVSDDVIRERAQQIFDKVNLTVKATEGGTGISMGAVIART--ELTFNEMYEEADNAL 1021

Query: 245  YVAKKSGRNRV 255
            Y  K+SGR R+
Sbjct: 1022 YDVKESGRGRI 1032


>gi|260771158|ref|ZP_05880085.1| C-di-GMP phosphodiesterase A-related protein [Vibrio furnissii CIP
           102972]
 gi|260613755|gb|EEX38947.1| C-di-GMP phosphodiesterase A-related protein [Vibrio furnissii CIP
           102972]
 gi|315179236|gb|ADT86150.1| GGDEF domain protein [Vibrio furnissii NCTC 11218]
          Length = 685

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 95/187 (50%), Gaps = 24/187 (12%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEKLSIVFF-DIDYFK 140
           ++  E  ++  +++QL+  D L+GL N S  +        L  +++   ++F+ D+D FK
Sbjct: 226 TLWHERELAEAKLNQLAYYDTLTGLANRSLLLQMLSKSIDLAQHDQHSGVLFYLDLDRFK 285

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGS------SEQEA 192
            IND+ GH +GDK+I  ++ +L           R+GG+EF     AL S      ++Q  
Sbjct: 286 TINDSLGHTIGDKLIKAIATRLQAWAKQDYIAARIGGDEFVVLIPALDSERVENVAKQLL 345

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           A+++N     I++ Q+  S    I +  SAGI           ++ +AD ALY AK SGR
Sbjct: 346 ALISNPYS--IDDHQLYCSVSIGISMFPSAGITN-------IDVLRQADTALYRAKVSGR 396

Query: 253 NRVVCFS 259
           N+ V + 
Sbjct: 397 NKYVFYE 403


>gi|239996737|ref|ZP_04717261.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Alteromonas macleodii ATCC 27126]
          Length = 450

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 13/184 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL  + +++ +L+  D L+ + N  AF+ +              + I   D+D+FK IND
Sbjct: 245 ELRSANHKLEKLAYYDALTNIPNRRAFLDAFAKSLNFAKRNGHAMLIGIADVDHFKAIND 304

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK--- 201
           ++GH  GD V+  ++  +   F     +GR+GGEEFA   + +S      L +  R+   
Sbjct: 305 SYGHGFGDDVLTIVAQTMQQFFRQEDAIGRIGGEEFAFCMVLTSPVSPRQLLDRFREKVS 364

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV--VCFS 259
           I+  +   +  G  + +++ A       +  I  ++  AD+ALY AK  GRN +   C+ 
Sbjct: 365 ILHETHPPL-KGRQVTLSLGAVYVSDLKEVSIKQLLCDADEALYRAKNKGRNTIECECYD 423

Query: 260 DIEN 263
           DI+N
Sbjct: 424 DIDN 427


>gi|149186853|ref|ZP_01865163.1| hypothetical protein ED21_25482 [Erythrobacter sp. SD-21]
 gi|148829520|gb|EDL47961.1| hypothetical protein ED21_25482 [Erythrobacter sp. SD-21]
          Length = 561

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 28/250 (11%)

Query: 38  FIATVIFIANIFLFYIGL---------TPFYGLEYILVENLSLVIISI-TISLLLGYISG 87
           F A V+F+A   +   G+          P   L   L+ N++L+++       L G I  
Sbjct: 29  FAAIVLFVATAGMVLPGIVASISHGGSPPDVVLTNALLLNIALIMLGWHRYKGLTGEIEA 88

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
               E         +L+  D L+G LN  +  + L          N  L+ +  D+D FK
Sbjct: 89  HRRSE-----REARRLADYDDLTGCLNRRSLAAELEAMLAKGAGKNRALAAIAIDLDNFK 143

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND  GH VGD V+   +++   +      + RLGG+EF        ++   +     R
Sbjct: 144 QVNDLNGHAVGDAVLRTTAERFRHILPEGASLARLGGDEFVCVLRYDLDRPERVDMLATR 203

Query: 201 KIIENSQINISSGPSIHITISAGIAERCH------KEPISTIIYRADQALYVAKKSGRNR 254
            + + ++  + +  ++ ITIS GIA   H      + P   ++++AD A+Y AKK G+NR
Sbjct: 204 LVEQVARPVVHNDIAVDITISIGIASSVHVGADTNQSPAQDLMHKADIAMYHAKKKGKNR 263

Query: 255 VVCFSDIENN 264
              F     N
Sbjct: 264 FYWFEPPMEN 273


>gi|28900733|ref|NP_800388.1| hypothetical protein VPA0878 [Vibrio parahaemolyticus RIMD 2210633]
 gi|260362632|ref|ZP_05775539.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
 gi|260877671|ref|ZP_05890026.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|260897186|ref|ZP_05905682.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           Peru-466]
 gi|28809179|dbj|BAC62221.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088212|gb|EFO37907.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           Peru-466]
 gi|308090696|gb|EFO40391.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|308112805|gb|EFO50345.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
          Length = 652

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 16/171 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D L+GL N S F       +   G   ++ ++++ D+D FK+IND +GH  G
Sbjct: 479 RLEYLAHHDALTGLANRSKFHLELEDLVQRSGYQRDEFAVLYLDLDGFKEINDTYGHDAG 538

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK----IIENSQ 207
           D+V+  ++D+L         + RL G+EF      ++++    +A  L +     IE   
Sbjct: 539 DEVLKRVADRLTSATRHSDLIARLSGDEFVMLVNPANQKVVTRIAEQLLESICAPIEYKG 598

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +  G SI + +  G+ ER      + I+  AD A+Y AKK+G+ + +  
Sbjct: 599 NELKVGVSIGVKL-VGVNER----DATRILKSADTAMYQAKKAGKGQAILM 644


>gi|295400746|ref|ZP_06810723.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294977327|gb|EFG52928.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 842

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 20/160 (12%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N    I  L +       +N +++I++ D+D FK IND+FGH +GD ++  ++
Sbjct: 419 DALTDLPNRRYLIEKLKNELKKAEEHNSRIAILYLDLDNFKNINDSFGHVMGDLLLKNVA 478

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSS---EQEAAILANDLRKII--ENSQINISSGP 214
            +L ++     F+ RLGG+EFA    G+    E+ A      L + I  EN ++ I++  
Sbjct: 479 QRLTMIH-PDCFIARLGGDEFAVLLSGNDFNIEEIACKTIQSLNQPIKLENKEVFITTSV 537

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            I +    G  E        T+I  AD A+Y AKK G+N+
Sbjct: 538 GISVYPKDGDDE-------MTLIRHADMAMYDAKKKGKNQ 570


>gi|260222135|emb|CBA31398.1| hypothetical protein Csp_F37330 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 666

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 9/165 (5%)

Query: 103 LSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+R D L+GL N S  +         +G    + ++++ D+D+FK IND  GH  GD ++
Sbjct: 245 LARHDSLTGLPNRSHVMQRFADTLRDMGEGATEAALIYIDLDHFKDINDTLGHAAGDALL 304

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++++L  +  +   V RLGG+EF    +  + +E   L            I+I  G  
Sbjct: 305 VQVAERLRAITRSSDMVARLGGDEFLILMVSHNIREEVDLVRRRLSSTVAQPIHI-HGAE 363

Query: 216 IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +T S G++    H + + T++  AD A+Y AK+SGRN +  F 
Sbjct: 364 VIVTPSVGVSFYPEHGKELDTLLRNADLAMYSAKESGRNALNIFE 408


>gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [Herminiimonas arsenicoxydans]
 gi|133738459|emb|CAL61504.1| Conserved hypothetical protein; putative EAL, GAF, PAS/PAC, GGDEF
           domains [Herminiimonas arsenicoxydans]
          Length = 859

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 10/169 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISS------LGSYNE-KLSIVFFDIDYFKQINDNFGHPVG 151
           RI  L+  D L+GL N +           L   ++  L+++F D+D+FK IND  GH +G
Sbjct: 427 RIESLAHFDVLTGLPNRALLDERAQRALRLAEEDQATLAVMFLDLDHFKNINDTLGHNLG 486

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++  L+ +L  V      + RLGG+EF     G++ + A  +A +L + I N    I 
Sbjct: 487 DTLLVELAQRLRAVLRRDDTLSRLGGDEFVLLLPGANRESAKKIAQELMRAI-NEPYRIG 545

Query: 212 SGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           S   +++  S GIA          T+   AD A+Y AK+ GRN    F+
Sbjct: 546 SH-ELNVMASIGIAVYPADGMDFETLCKNADVAMYRAKQEGRNAYRSFT 593


>gi|121535801|ref|ZP_01667602.1| diguanylate cyclase [Thermosinus carboxydivorans Nor1]
 gi|121305633|gb|EAX46574.1| diguanylate cyclase [Thermosinus carboxydivorans Nor1]
          Length = 491

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 9/172 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +R+   +  D L+GL N+  F             Y   LS++  DIDYFK  ND +GH  
Sbjct: 315 SRVELQAITDGLTGLYNYRYFQTLFEREFKRAVRYKRPLSLLMIDIDYFKLYNDTYGHRQ 374

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQIN 209
           GD +I  ++  +         V R GGEEFA     ++  EA  +A  +R  + E    N
Sbjct: 375 GDHIIRTIAKIIRQNCRDVDIVVRYGGEEFAVLFPETTVDEAFKIAERIRMAVAEYPFAN 434

Query: 210 ISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSD 260
             S P   +T+S G+A   +     T +I  AD ALY AK++ +NRV  + D
Sbjct: 435 KHSQPGGILTVSMGVAGYPYDAQSETELIDHADMALYRAKRTSKNRVCLYRD 486


>gi|119483249|ref|ZP_01618663.1| hypothetical protein L8106_04331 [Lyngbya sp. PCC 8106]
 gi|119458016|gb|EAW39138.1| hypothetical protein L8106_04331 [Lyngbya sp. PCC 8106]
          Length = 1614

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 59/166 (35%), Positives = 78/166 (46%), Gaps = 22/166 (13%)

Query: 107  DCLSGLLNHS--------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD----KV 154
            D L+GL N           F  S  S  + L ++  DID+FKQ NDNFGH  GD    KV
Sbjct: 1455 DALTGLFNRRYLKEFLVREFKRSQRS-GQPLGVIMVDIDHFKQFNDNFGHEAGDVVLQKV 1513

Query: 155  IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
              FL  Q+ +         R GGEE        S +   + A +L + I   Q++     
Sbjct: 1514 AQFLQHQVRL----SDLACRYGGEEMTLILPEMSLENVKVRAEELCQGIRQLQLSYQGKD 1569

Query: 215  SIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVC 257
               IT S G+A  C  +  ST   ++ +AD ALY AK  GRN+VVC
Sbjct: 1570 LGQITASFGVA--CFPQQGSTPEEVMKKADDALYQAKHQGRNQVVC 1613


>gi|83647412|ref|YP_435847.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83635455|gb|ABC31422.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 435

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 11/174 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
           ++  + +LS +D L+ + N   F  SL +        ++ L+++  D+D+FK  ND +GH
Sbjct: 230 AHAELERLSLMDSLTQVANRRHFNKSLEAEWNRCLRDDKPLALLMVDVDFFKAYNDAYGH 289

Query: 149 PVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
             GD  +  ++D L          V R GGEEFA     + +  A  LA  + + I    
Sbjct: 290 QRGDDCLMNVADCLTQTSRRAADLVARYGGEEFAVILPHADQAAAQRLAEQIVRQIYELN 349

Query: 208 INISSGPSI-HITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           I     P +  +T+S G +       +  +T+I +AD ALY+AK+ G+NR   F
Sbjct: 350 IENEGSPELKRLTVSVGFSALAPSQGDTPNTLISQADSALYMAKRKGKNRAHGF 403


>gi|330828094|ref|YP_004391046.1| GGDEF family protein [Aeromonas veronii B565]
 gi|328803230|gb|AEB48429.1| GGDEF family protein [Aeromonas veronii B565]
          Length = 296

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 9/178 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDY 138
           + +++ +I ++  +   R+ + S  D L+GL N   F      L +      ++  DID+
Sbjct: 120 VAWVTRNITRQYELQ-QRLLRQSETDQLTGLYNRRFFFEHCQPLRAGEAPCGLIMLDIDH 178

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND +GH  GD+ +   S  +  +        R GGEEF        E     +A  
Sbjct: 179 FKQLNDRYGHQQGDRALQRFSSCIDALLRADDLFVRSGGEEFLILLPRIDEAGLLQMAEQ 238

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +R  +E     + + P + IT+S G      +E I+  + RAD+ LY AK++GRNRV 
Sbjct: 239 IRAAVE----ALPADP-VAITVSLGTTLVQPEEEINQALARADEWLYRAKRAGRNRVA 291


>gi|297568323|ref|YP_003689667.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924238|gb|ADH85048.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 603

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 11/183 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L E  +   R+      D L+GL N S    +L        ++    ++++ D+D+FK +
Sbjct: 154 LAERRVMEARLKHRVGHDELTGLPNRSQLEGALELALIRAQNFQRSGALLYLDVDHFKLL 213

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GDK++  ++  L           R+GG+EFA     ++ ++   LA +LR++
Sbjct: 214 NDTEGHESGDKLLTGVAGVLRRRVLPRHLAVRIGGDEFAVLLENTTTEDVLKLAEELREL 273

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSD 260
           +   +     G   ++  S G+A     E +    ++ RADQA +VAK+ GRNRV C+ D
Sbjct: 274 LHEYRFEGCLG-CYNLGASIGVALMSPGESLQAGELLSRADQACHVAKRRGRNRVHCY-D 331

Query: 261 IEN 263
            E+
Sbjct: 332 PED 334


>gi|167623780|ref|YP_001674074.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167353802|gb|ABZ76415.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 343

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 88/168 (52%), Gaps = 5/168 (2%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +++ + +L+  D L+   N  AF      +  +  ++  D+D+FK IND +GH +GD V+
Sbjct: 172 AHDSLIKLAHSDSLTKTNNRLAFSEGFNDHQGEY-LLLLDLDHFKSINDTYGHDIGDLVL 230

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQINISSGP 214
             +++    +      V R+GGEEF    LG+S+ E A+  ++ +R+ +    I      
Sbjct: 231 VSVANCFKTLIDESQ-VFRIGGEEF-CIWLGTSDLEGALEHSEKIRRSVAQQSIECDE-Q 287

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            I IT+S G+A+   +   S ++  AD  LY AK  GRN +V   ++E
Sbjct: 288 KISITVSGGLAQHQPQMLQSELLKMADNRLYCAKSHGRNLIVHKDEME 335


>gi|153838120|ref|ZP_01990787.1| FOG ggdef domain [Vibrio parahaemolyticus AQ3810]
 gi|149748506|gb|EDM59365.1| FOG ggdef domain [Vibrio parahaemolyticus AQ3810]
          Length = 656

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 16/171 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D L+GL N S F       +   G   ++ ++++ D+D FK+IND +GH  G
Sbjct: 479 RLEYLAHHDALTGLANRSKFHLELEDLVQRSGYQRDEFAVLYLDLDGFKEINDTYGHDAG 538

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK----IIENSQ 207
           D+V+  ++D+L         + RL G+EF      ++++    +A  L +     IE   
Sbjct: 539 DEVLKRVADRLTSATRHSDLIARLSGDEFVMLVNPANQKVVTRIAEQLLESICAPIEYKG 598

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +  G SI + +  G+ ER      + I+  AD A+Y AKK+G+ + +  
Sbjct: 599 NELKVGVSIGVKL-VGVNER----DATRILKSADTAMYQAKKAGKGQAILM 644


>gi|21109821|gb|AAM38303.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 983

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 1/122 (0%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+IND++GH VGD V++ + + L        F  R GGEEF  AA G    +A  
Sbjct: 861 DIDHFKRINDDYGHEVGDAVLSAIGEVLSEQDQAHCFAARHGGEEFLLAATGLDAVQARA 920

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           L   +R+ + + +++ + G ++  T S G+A          ++  AD+ LY AK+ GR+R
Sbjct: 921 LFERMRQRLADIEVD-AQGMTVRCTASMGMAMSEEAPSRRELLALADRRLYEAKRQGRDR 979

Query: 255 VV 256
           ++
Sbjct: 980 LI 981


>gi|77748715|ref|NP_643767.2| hypothetical protein XAC3460 [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 1000

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 1/122 (0%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+IND++GH VGD V++ + + L        F  R GGEEF  AA G    +A  
Sbjct: 878 DIDHFKRINDDYGHEVGDAVLSAIGEVLSEQDQAHCFAARHGGEEFLLAATGLDAVQARA 937

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           L   +R+ + + +++ + G ++  T S G+A          ++  AD+ LY AK+ GR+R
Sbjct: 938 LFERMRQRLADIEVD-AQGMTVRCTASMGMAMSEEAPSRRELLALADRRLYEAKRQGRDR 996

Query: 255 VV 256
           ++
Sbjct: 997 LI 998


>gi|324113159|gb|EGC07134.1| EAL domain-containing protein [Escherichia fergusonii B253]
          Length = 663

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 89/183 (48%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E  ++  R+  L+  D ++GL N +A    +      + N ++ IV+ D+D FK
Sbjct: 219 SGTDITEERVAQERLRVLANTDTITGLPNRNAIHELIDNAIVQTTNAQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA----LGSSEQEAAILA 196
           ++ND +GH  GD+++  ++  ++        + R GG+EF   A     G+ E  A+ + 
Sbjct: 279 KVNDAYGHMFGDQLLQAVALAILSCLDNDQTLARHGGDEFIVLAPDTSQGALEAMASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR       I + +G S+ I +S       H      +I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRLPFRIGLIEVQTGCSVGIALSP-----LHGHDSDCLIRSADTAMYTAKEGGRGQFC 393

Query: 257 CFS 259
            FS
Sbjct: 394 VFS 396


>gi|299132163|ref|ZP_07025358.1| diguanylate cyclase [Afipia sp. 1NLS2]
 gi|298592300|gb|EFI52500.1| diguanylate cyclase [Afipia sp. 1NLS2]
          Length = 492

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 84/174 (48%), Gaps = 18/174 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            R+SQL+  D L+G+ N   F   +      G     LS++  D D+FK  ND FGH  G
Sbjct: 319 KRLSQLATTDALTGIDNRRRFDERILDEWRRGWQKLPLSLLMIDADHFKAFNDLFGHQAG 378

Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D+++A ++  +V     P     R GGEEFA     +    A  LA ++R      ++  
Sbjct: 379 DQLLARIASCIVESAKRPSDCAARYGGEEFALLLPNTDLAGALKLAEEVR-----DRVAH 433

Query: 211 SSGPSIHITISAGIAERCHKEPIS----TIIYRADQALYVAKKSGRNRVVCFSD 260
            S      T+S GIA  C    ++     +I  AD+ALY AK+ GRNR V  ++
Sbjct: 434 LSADKWATTVSIGIA--CLIPDMAGSPKALIAAADKALYQAKEQGRNRCVAINE 485


>gi|285017083|ref|YP_003374794.1| hypothetical protein XALc_0263 [Xanthomonas albilineans GPE PC73]
 gi|283472301|emb|CBA14807.1| hypothetical protein XALc_0263 [Xanthomonas albilineans]
          Length = 595

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 79/169 (46%), Gaps = 12/169 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +R+   S  D L+GL N      SL          +  L+++  D+D+FK +ND FGH  
Sbjct: 412 HRLRTQSIRDPLTGLYNRRYLEESLLRELSRCARRDLPLALMMLDLDHFKALNDRFGHAG 471

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD ++A     L  +        R GGEEF     G++   A   A  +R  +E  Q+  
Sbjct: 472 GDALLAAFGQLLGGLVRPEDIACRYGGEEFTVILPGAAADVAQRRAEQIRAAVEQMQVQH 531

Query: 211 SSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256
                  IT+S G+A   + E  ST   ++  AD ALY  K+SGRNRV 
Sbjct: 532 HGQMLPSITVSIGVAA--YPEHGSTGEELLRCADAALYCGKRSGRNRVA 578


>gi|254559690|ref|YP_003066785.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens
           DM4]
 gi|254266968|emb|CAX22768.1| putative diguanylate cyclase/phosphodiesterase, GGDEF and EAL
           domains [Methylobacterium extorquens DM4]
          Length = 668

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 18/163 (11%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GLLN + FI       E+L+      ++  D+D FK +ND +GH  GD+V+A ++ 
Sbjct: 241 DGLTGLLNRAGFIQR---AEEQLAAGASVCLMLLDLDGFKSVNDVYGHSTGDRVLAEVAR 297

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHIT 219
           ++ V         RLGG+EFA     +   E+ A LA  L + +     +  +G    + 
Sbjct: 298 RIRVAVPVDCDAARLGGDEFALVYDTARVIESPAALAERLIRTVAQPFESFDTG---RLG 354

Query: 220 ISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +S GI   CH+  + ++ ++  AD+ALY AK SGRN    F D
Sbjct: 355 MSIGI---CHRPSDSLTHLLSCADEALYAAKHSGRNHFRLFDD 394


>gi|213967727|ref|ZP_03395874.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
 gi|213927503|gb|EEB61051.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
          Length = 440

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 32/228 (14%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F+ L    +   +L I+   + L+   I+ ++  E +       Q++  D L+GL    A
Sbjct: 214 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 263

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
               +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        R GG
Sbjct: 264 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGRAYRYGG 323

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218
           EEFA      +  E       +R+ I N  I   N  S P                S+ +
Sbjct: 324 EEFAIVFAAKTIDECMPHLEAIRETIANYAIQLRNKDSRPQDDQQGRQRRSGAHEASVSV 383

Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           T+S G+AER   H+ P   ++  ADQALY AK +GRN VV +  +   
Sbjct: 384 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 430


>gi|146308662|ref|YP_001189127.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
 gi|145576863|gb|ABP86395.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
          Length = 715

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 17/165 (10%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN   F       ++ +    +++++++ D+D FK+IND+ GH VGD+++  + 
Sbjct: 282 DSLTGLLNRRGFHLALESALARIERSGQRIAVLYLDLDGFKRINDSLGHDVGDQLLRRVG 341

Query: 160 DQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +QL         + R+GG+EF A    LG  E +AA +A  L +++  S  +   G    
Sbjct: 342 EQLKACLRPYDSLARIGGDEFTALLDNLGHPE-DAAKVAEKLIELV--SVRHTLDGVDFA 398

Query: 218 ITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  S GIA  C  E    +  ++  AD A+Y AK++GR +   FS
Sbjct: 399 LGASVGIA--CFPECGQSVEGLLRSADMAMYEAKRAGRQQYRFFS 441


>gi|94264857|ref|ZP_01288632.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|93454678|gb|EAT04943.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
          Length = 833

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 91/174 (52%), Gaps = 7/174 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           E    Y+ ++ L   D L+  LNH A I ++     +L++ + D+D FK IND  GH VG
Sbjct: 398 ERIAHYDTLTGLPNRDLLADRLNH-AMIQTI-RRQTRLAVAYLDLDGFKAINDTHGHDVG 455

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++  L+ ++         +GRLGG+EF A      + E  +    L++++  + + +S
Sbjct: 456 DFLLRTLAGRMQQTLRESDTLGRLGGDEFVAIFQDLPDNETCLPL--LQRLLNAAAMPVS 513

Query: 212 SGPSI-HITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIE 262
              +I  ++ S G+      E I    ++ +ADQA+Y AK++G+NR   F  ++
Sbjct: 514 YQETILQVSASLGVTFFPQSEKIDADQLLRQADQAMYQAKQTGKNRYHLFDAVQ 567


>gi|330881636|gb|EGH15785.1| PAS:GGDEF protein [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 333

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 2/129 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+ +  DID FK +ND +GH  GD V+  +++            GR+GGEEFAA   G +
Sbjct: 204 LAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCA 263

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVA 247
              A  +A  L++ I+      S G +  IT S G+     ++  + T+  RAD A+Y A
Sbjct: 264 PDMAMQIAERLQREIQRQNFQ-SGGTTFSITASQGLTNLGPEDSSLETLYGRADAAMYQA 322

Query: 248 KKSGRNRVV 256
           K+ G+N++V
Sbjct: 323 KRQGKNQIV 331


>gi|255654751|ref|ZP_05400160.1| putative signaling protein [Clostridium difficile QCD-23m63]
          Length = 833

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 13/165 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPV 150
           NR+    + D L+ + N +A+I  L + N       +  +++  DIDYFK IND +GH V
Sbjct: 670 NRLLDKVQRDSLTNIYN-AAYIRKLTAQNLLNLSTEKNGALLIIDIDYFKSINDTYGHLV 728

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQIN 209
           GDK++  ++  L   F     VGRLGG+EF+         E  I   ND+   I    I 
Sbjct: 729 GDKILIDVAKVLDESFTKDDIVGRLGGDEFSVYINDIINNEELINKCNDVYNRIH--LIK 786

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + +G S+ I++   IA +C +E    +   AD ALY +K+ GRNR
Sbjct: 787 LPNGKSLSISMGVVIA-KCGQE-YDELYQIADNALYDSKREGRNR 829


>gi|153828795|ref|ZP_01981462.1| ggdef family protein [Vibrio cholerae 623-39]
 gi|148875748|gb|EDL73883.1| ggdef family protein [Vibrio cholerae 623-39]
          Length = 527

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 6/153 (3%)

Query: 107 DCLSGLLNHSAFISSLGSY-NEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ + N   F   L    +EK S  ++ FDID FKQIND++GH  GD  +  + D + 
Sbjct: 353 DSLTHIYNRRFFSQHLCKMLDEKQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVK 412

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                     R GG+EFA  +  + E         +RK++E   + +++   + +TIS G
Sbjct: 413 KELVESDIFARFGGDEFAILSSVTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIG 472

Query: 224 IAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
            +  C + EP   I+   D  LY++K  GRNRV
Sbjct: 473 ASINCEYSEP--EILQSVDDQLYLSKSKGRNRV 503


>gi|194367156|ref|YP_002029766.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
 gi|194349960|gb|ACF53083.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
          Length = 481

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 96/193 (49%), Gaps = 13/193 (6%)

Query: 82  LGYISGSILKELFISYNRIS--QLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIV 132
           LG+   SIL ++ +   + S  QL+R D L+G+ N   F + L   +N       +L ++
Sbjct: 282 LGFGVRSILLQVDLMERQASLDQLARQDGLTGVANRREFDALLLAEWNRARRSGSELGLL 341

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQE 191
             DID+FK  ND  GHP GD+ +  ++  L +  G     V R GGEEFA    GS    
Sbjct: 342 LLDIDHFKVFNDRHGHPAGDRCLQAVATVLKISAGRAGDSVARYGGEEFAVIVPGSPLSG 401

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              LA  LR+ +  + + +  G S+ I+I  G            ++  AD  LY AK++G
Sbjct: 402 VLALAERLREAV--AALPLPEG-SVSISIGVGYLHPPALASADQLLADADAGLYAAKRAG 458

Query: 252 RNRVVCFSDIENN 264
           RN+V+  + + ++
Sbjct: 459 RNQVILHAHVLDD 471


>gi|86159126|ref|YP_465911.1| GAF sensor-containing diguanylate cyclase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775637|gb|ABC82474.1| diguanylate cyclase with GAF sensor [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 494

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 75/137 (54%), Gaps = 9/137 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHP 149
           + ++ +LS+ D L+G+ N  +  + L    E+       +++   D+D FKQ N+ FGH 
Sbjct: 301 HQKMVRLSQSDALTGVHNRRSLFARLDMERERCERFDHPMALALVDVDRFKQFNEAFGHA 360

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQI 208
            GD ++  +++ L         V R GGEEF A     +++EAA+LA++ LR+ +E + +
Sbjct: 361 AGDGILRRVAELLAGAVRKVDLVARYGGEEF-AVIFPRADREAALLASEKLRQAVEAAAL 419

Query: 209 NISSGPSIHITISAGIA 225
              +    H+TIS G+A
Sbjct: 420 PHDASERGHVTISVGVA 436


>gi|159185090|ref|NP_355140.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
 gi|159140363|gb|AAK87925.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
          Length = 379

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 9/165 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI-VFFDIDYFKQINDNFGHPVGDKV 154
           S  ++  L+  D L+G+ N   F  ++ +  +     +  DID+FK IND FGH VGD V
Sbjct: 213 SERKLLVLANTDPLTGVKNRRFFFQTMPAAPDPADAAMLLDIDHFKSINDRFGHAVGDSV 272

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++ ++         + R GGEEF     G+   +A ++   +R  +  ++++   G 
Sbjct: 273 LQEVARRISGSIRGGDVLARYGGEEFIIFLPGAGVDKACMIGERIRDAVAINEVD-CGGL 331

Query: 215 SIHITISAGIAE----RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + +TIS G+A     RC  + ++    +AD+ALY AK  GRN V
Sbjct: 332 RVGVTISIGVATTGDMRCDLQMLAE---KADRALYRAKTEGRNCV 373


>gi|70734241|ref|YP_257881.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5]
 gi|68348540|gb|AAY96146.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5]
          Length = 422

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 79/156 (50%), Gaps = 12/156 (7%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N + F       + S    NE+++++F D D FK+INDNFGH  GD V+  ++
Sbjct: 250 DSLTGLPNRAFFEGRLIRALRSANKLNERMAVLFLDSDRFKEINDNFGHAAGDAVLVAVA 309

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI- 218
            ++         V RLGG+EFA         E A    D  KII + ++ I    S+ I 
Sbjct: 310 TRIRAQLREDDLVARLGGDEFAVLLTPLHRVEDAQRIAD--KIISSMEVPIQLPGSLSIL 367

Query: 219 -TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGR 252
            ++S GIA    H     +++  AD A+Y AK+  R
Sbjct: 368 TSLSIGIAVYPDHGATPGSLLNAADAAMYQAKRGSR 403


>gi|325517996|gb|EGC97812.1| diguanylate cyclase [Burkholderia sp. TJI49]
          Length = 234

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVF----FDIDYFK 140
           S L+EL  +  ++  ++  D ++G  N   FI+ +       E+    F     D+D FK
Sbjct: 57  SALQELRRTNQKLEYMAATDPMTGASNRRQFIAQVEREIVRAERDGTPFCLLALDLDNFK 116

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH +GD+V+  +  Q +        + R+GGEEF A       + A + A  +R
Sbjct: 117 NINDAYGHQIGDEVLRGVVRQCLDAIRPAGGLARVGGEEFMALLPEMPLEGARMTAERVR 176

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             I +S   +     + +T+S G+A+       +  ++   D+ LY AK+ GRNRVV 
Sbjct: 177 SSIASSPFGLDF-KRVQVTVSVGVAQYGVDGSTVDALLRAVDERLYQAKREGRNRVVA 233


>gi|257470395|ref|ZP_05634486.1| putative signaling protein [Fusobacterium ulcerans ATCC 49185]
 gi|317064603|ref|ZP_07929088.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313690279|gb|EFS27114.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 340

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 15/162 (9%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLSI----VFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           S+ D L+GLLN     S +    E   +    +  D+D FK+IND  GH  GD+++  ++
Sbjct: 71  SQHDPLTGLLNRREMKSRVNKLLENGDVEGTFIIIDVDNFKKINDVQGHVKGDEILKKIA 130

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHI 218
           + L   F     + R+GG+EF   ALG  S+++     N   ++I++++I          
Sbjct: 131 ESLRKSFLEIDDISRIGGDEFVVFALGDISKEKLEEKMNKFFELIKDAEI---------- 180

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           T SAG+ +  H++   ++ Y AD AL  AK SG+N+   F++
Sbjct: 181 TCSAGVCKTSHRDDYDSLYYNADMALISAKISGKNKYKVFTE 222


>gi|238791809|ref|ZP_04635446.1| hypothetical protein yinte0001_15250 [Yersinia intermedia ATCC
           29909]
 gi|238728913|gb|EEQ20430.1| hypothetical protein yinte0001_15250 [Yersinia intermedia ATCC
           29909]
          Length = 471

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 85/177 (48%), Gaps = 11/177 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           + EL  S + +  LS+ D L+G+ N   F        +K       LS++  D D FK  
Sbjct: 289 ITELKQSESILKALSQTDVLTGVANRRHFDDIYQHIWQKNRTEGGALSVLMIDFDNFKSF 348

Query: 143 NDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH +GD  +  + + L   + G    + R GGEEF      S+ ++A  +A  +R 
Sbjct: 349 NDLYGHAMGDVCLKSIVETLSKSIRGGSDILARYGGEEFIVLLAPSTLEDAKAVAERMRH 408

Query: 202 IIENSQINISSGPSIHITISAGIAE-RCHKEPIST--IIYRADQALYVAKKSGRNRV 255
            IE   I     P   +TIS G+A      E IS   +   AD+ALY AK +GRNRV
Sbjct: 409 SIEELDIPHGMSPGGRVTISIGVASVSAPGESISATDVSVAADKALYRAKTAGRNRV 465


>gi|229010055|ref|ZP_04167269.1| Sensory box/GGDEF [Bacillus mycoides DSM 2048]
 gi|228751188|gb|EEM01000.1| Sensory box/GGDEF [Bacillus mycoides DSM 2048]
          Length = 569

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKLS--IVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++     EK+   +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNKMIAEKIEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       +  E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKTHTNDEMRQLATSVLSCFQAP- 253

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGKDVETLLKNSDLAMYSAKEQGRNAACFFTD 306


>gi|257058436|ref|YP_003136324.1| diguanylate cyclase [Cyanothece sp. PCC 8802]
 gi|256588602|gb|ACU99488.1| diguanylate cyclase [Cyanothece sp. PCC 8802]
          Length = 285

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 12/166 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           +Y R   L+R D L+G  N+  F       I+    Y   L++ +FD+D FKQ+ND  GH
Sbjct: 117 AYEREKVLARTDSLTGAFNNRFFREILQIEINRCYRYQHPLTLAYFDVDNFKQVNDQLGH 176

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+++  ++  +         + RLGG+EFA     +   +  I+   LR++ E   +
Sbjct: 177 SSGDQLLQLITQIIQKNIRQTDTLARLGGDEFALLLPETDYNQGQIV---LRRVQEELLL 233

Query: 209 NISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRN 253
            I S   + I  S G+       E +   + + D  +Y  KK G+N
Sbjct: 234 TIES-EKVPIGFSIGVLTHNIAPESVDKALEKVDSLMYTVKKQGKN 278


>gi|254249082|ref|ZP_04942402.1| hypothetical protein BCPG_03942 [Burkholderia cenocepacia PC184]
 gi|124875583|gb|EAY65573.1| hypothetical protein BCPG_03942 [Burkholderia cenocepacia PC184]
          Length = 744

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 17/186 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDID 137
           SG  + E   +  R+++L+  D L+GL N        H+A      +    + I+F D+D
Sbjct: 297 SGIDITEERNAQQRLTELANTDVLTGLPNRHAISERIHAAIAEEDANTRGHVGILFLDLD 356

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE----FAAAALGSSEQEAA 193
            FK++ND++GH  GD+++  +S  +     +   + RLGG+E    F  A     E  A 
Sbjct: 357 NFKRVNDHYGHITGDRLLQDVSAIISGCLPSGATLARLGGDEFLVLFEHATRPLLEATAQ 416

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           I+   LR  I    + + +  SI I +        H + + T+I  AD A+YVAK+ G++
Sbjct: 417 IILERLRTPIHLGLMEVYTSCSIGIAMHP-----QHGDSLETLIRSADTAMYVAKEEGKH 471

Query: 254 RVVCFS 259
               FS
Sbjct: 472 TYRVFS 477


>gi|91223268|ref|ZP_01258534.1| GGDEF family protein [Vibrio alginolyticus 12G01]
 gi|91192081|gb|EAS78344.1| GGDEF family protein [Vibrio alginolyticus 12G01]
          Length = 527

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 89/192 (46%), Gaps = 15/192 (7%)

Query: 75  SITISLLLGYISGSILKELFISY-NRISQLSR---IDCLSGLLNHSAFISSLGS---YNE 127
            + + L+L  +    LKE    + N ++QL +    D L+ L N       L     ++ 
Sbjct: 336 ELQLKLILSELENKELKETTKQHKNTVAQLQQDVFTDPLTSLHNRRWLEVKLKDLLLHDT 395

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAA 183
             +++  DID+FK IND   H VGDK I  +S +L   F    F G    R GGEEF   
Sbjct: 396 AFALMVIDIDHFKSINDELSHLVGDKAIKSVSQELASYF---RFKGASCVRFGGEEFLVI 452

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              +  + A + A + R+ I     +   G    +T+S GI      E      YRAD+A
Sbjct: 453 LENTQLERAEMHAENYRERIYQYGWDDILGER-GLTVSIGITLHREGENTQRTFYRADKA 511

Query: 244 LYVAKKSGRNRV 255
           LY AK +GRN+V
Sbjct: 512 LYRAKANGRNQV 523


>gi|3659615|gb|AAC61684.1| diguanylate cyclase [Gluconacetobacter xylinus]
          Length = 580

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 94/187 (50%), Gaps = 12/187 (6%)

Query: 83  GYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS--------IVF 133
           GY++    + EL  + +R+  L+  D L+GL N   F + L +  E  S        +V 
Sbjct: 120 GYVATRFEITELMNTRDRLKSLAATDPLTGLFNRGGFNNVLQTAVEDKSQNITRDIMLVM 179

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           FD+D FKQIND  GH  GD V+  +S++L+ +      V RLGG+EFA     +  +   
Sbjct: 180 FDLDGFKQINDIHGHHAGDVVLKVISNRLLALVHPEDAVCRLGGDEFALILNHTLHKFPL 239

Query: 194 ILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            L   L K++   +  I  G + ++++ S G+     +E   ++   AD ALY AK++G 
Sbjct: 240 SLM--LEKLLAELEAPIEVGNTMVNVSGSIGVTPIASQESAESLQKNADIALYAAKRAGG 297

Query: 253 NRVVCFS 259
           ++   F 
Sbjct: 298 HQARMFD 304


>gi|78188889|ref|YP_379227.1| diguanylate cyclase [Chlorobium chlorochromatii CaD3]
 gi|78171088|gb|ABB28184.1| diguanylate cyclase (GGDEF domain) [Chlorobium chlorochromatii
           CaD3]
          Length = 418

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 77/142 (54%), Gaps = 8/142 (5%)

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV---VFGTPMFVGRLGGEEFAAA 183
           + LS+   DID+FKQ ND  GH  GDK +   ++ +     V+  P    R GG+EFA  
Sbjct: 277 DSLSLAMLDIDFFKQYNDANGHLSGDKALKRFAELISAECRVYDLP---ARFGGDEFALL 333

Query: 184 ALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAE-RCHKEPISTIIYRAD 241
              +S  +AA +A  LR +IE++   +    P   +TIS G+A      +   +++  AD
Sbjct: 334 FPRTSAADAADIAERLRHLIESASFPHAECFPDGKLTISIGLATFPNDAQDWHSLLNNAD 393

Query: 242 QALYVAKKSGRNRVVCFSDIEN 263
           +ALY AK  GRN VV FS+++ 
Sbjct: 394 RALYKAKALGRNSVVSFSEVKQ 415


>gi|21243539|ref|NP_643121.1| hypothetical protein XAC2812 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109104|gb|AAM37657.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 788

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 9/165 (5%)

Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D ++GL+N       L        S     ++ F D+D+FK +ND FGH VGD+ + 
Sbjct: 357 ARHDAMTGLINRHEIERRLLRLIELPQSPQMCHALCFVDLDHFKLVNDTFGHAVGDRFLC 416

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             +D + +   +  ++GRLGG+EFA     +   +A I+   +   +     +   G  +
Sbjct: 417 HFADVITMQLRSGDWLGRLGGDEFAILLANTDLAQAQIVLERMHGAL-GQPWSHQGGRPL 475

Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + S G+ E R     ++ ++  AD A + AK+ GRNR+ CF++
Sbjct: 476 TPSCSFGVVEIRQGVGDLNALMTAADLACHAAKEEGRNRIRCFNE 520


>gi|330890171|gb|EGH22832.1| PAS:GGDEF protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 332

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 2/129 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+ +  DID FK +ND +GH  GD V+  +++            GR+GGEEFAA   G +
Sbjct: 203 LAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCA 262

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVA 247
              A  +A  L++ I+      S G +  IT S G+     ++  + T+  RAD A+Y A
Sbjct: 263 PDMAMQIAERLQREIQRQNFQ-SGGTTFSITASQGLTNLGPEDSSLETLYGRADAAMYQA 321

Query: 248 KKSGRNRVV 256
           K+ G+N++V
Sbjct: 322 KRQGKNQIV 330


>gi|323496651|ref|ZP_08101703.1| diguanylate cyclase [Vibrio sinaloensis DSM 21326]
 gi|323318304|gb|EGA71263.1| diguanylate cyclase [Vibrio sinaloensis DSM 21326]
          Length = 354

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 86/175 (49%), Gaps = 25/175 (14%)

Query: 98  NRISQLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           + +  LS  D L+G LN    H++   ++  YN   +IV  DID+FK IND +GH VGD 
Sbjct: 171 SELRHLSERDVLTGALNRHQLHASLERAIEQYNHS-TIVMIDIDHFKVINDQYGHDVGDD 229

Query: 154 VIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALG----SSEQEAAILANDLRKIIEN 205
           VI    +++V V            RLGG+EF     G    S E   A++ +++R+    
Sbjct: 230 VI----NEVVRVLNHNTRADDRLFRLGGDEFLLLFHGIDQYSVESIMALICHNVREQNYP 285

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            Q          +T+S GIA+    E     + RAD ALY +K  GRNRV  + D
Sbjct: 286 HQKE--------VTLSCGIAQSQPFEESQGWMKRADLALYQSKALGRNRVSVYCD 332


>gi|300114166|ref|YP_003760741.1| GAF/PAS/PAC sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
 gi|299540103|gb|ADJ28420.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Nitrosococcus watsonii C-113]
          Length = 946

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 17/168 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  L+  D L+GL N S F+  L         ++ +L+++F D+D FK +ND  GHP+
Sbjct: 504 QRLYHLAHHDALTGLPNRSLFLDRLEHAIHHAQRHDHRLAVLFIDLDRFKFVNDTLGHPI 563

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQI 208
           GD ++  +++++ +       + RLGG+EF       ++  A  L    +KIIE      
Sbjct: 564 GDSLLKQVAERMRLNVRAEDTIARLGGDEFTVIIENFTDTSALSLI--AQKIIEACKEPF 621

Query: 209 NISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRN 253
           NI  G  + I+ S GI+   E  H+   + ++  AD A+Y AKK G++
Sbjct: 622 NI-KGKELFISASIGISLYPEDGHE--ANMLLQHADAAMYRAKKRGKS 666


>gi|319763232|ref|YP_004127169.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|330825426|ref|YP_004388729.1| diguanylate cyclase [Alicycliphilus denitrificans K601]
 gi|317117793|gb|ADV00282.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|329310798|gb|AEB85213.1| diguanylate cyclase [Alicycliphilus denitrificans K601]
          Length = 257

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 9/167 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           N + +LS  D L+GL N           +  +    E   ++  DID+FKQ+ND  GH  
Sbjct: 48  NGLCELSLKDPLTGLPNRRHVHGVLERELDRVARSGEAALLLMLDIDHFKQVNDCHGHLA 107

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  ++  L         V R GGEEFA            ++A  +R+ IE++ + +
Sbjct: 108 GDIVLQSVARTLESCVRPMDTVSRYGGEEFAIVLPACQFGFGRVVAERVRRAIESTPVYV 167

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRV 255
           S   ++++T+S G A        +T ++  RAD  LY AK SGRNRV
Sbjct: 168 SPSLTLNVTVSIGGAFALQWIRSTTALWTDRADAELYKAKLSGRNRV 214


>gi|293602568|ref|ZP_06685013.1| diguanylate cyclase with PAS/PAC sensor [Achromobacter piechaudii
           ATCC 43553]
 gi|292819044|gb|EFF78080.1| diguanylate cyclase with PAS/PAC sensor [Achromobacter piechaudii
           ATCC 43553]
          Length = 441

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 93/185 (50%), Gaps = 28/185 (15%)

Query: 88  SILKELFISYNRISQLSRI---DCLSGLLNHS-------AFISSLGSYNEKLSIVFFDID 137
           S+ K++     R   L R    D L+GL N +         ++S  + ++ LS++  D+D
Sbjct: 239 SVSKDVSQQVEREQALLRAATKDKLTGLYNRAHGEKTLRDAVASAETGDDPLSLIIADVD 298

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK+IND+FGH  GD+V++ ++  L     +   + R GGEEF             +LA+
Sbjct: 299 HFKRINDHFGHLAGDRVLSEIARILQGAVRSQDTIIRWGGEEF-----------VIVLAD 347

Query: 198 ----DLRKIIENSQINISSGPSIHI---TISAGIAERCHKEPISTIIYRADQALYVAKKS 250
               D   I E ++  + +     I   ++S G+A+    E I  +I RAD ALY AK+ 
Sbjct: 348 CPILDAIDIAERARTCVHAHRDAEIGSLSLSLGVAQFVAGETIEELIARADTALYEAKRG 407

Query: 251 GRNRV 255
           GRNR+
Sbjct: 408 GRNRL 412


>gi|156972882|ref|YP_001443789.1| signal transduction protein [Vibrio harveyi ATCC BAA-1116]
 gi|156524476|gb|ABU69562.1| hypothetical protein VIBHAR_00559 [Vibrio harveyi ATCC BAA-1116]
          Length = 815

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 90/171 (52%), Gaps = 12/171 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
           ++ +++  D L+ L N +  IS L  + E         + +F DID+FK IND+ GH  G
Sbjct: 389 KLQRMAFYDPLTNLPNRTHLISLLEQHIESGQQHQHAFATLFLDIDHFKHINDSMGHFCG 448

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQIN 209
           D+++  L+D+L  V      V R+GG+EF    L + E ++ ++ + +  I+   N    
Sbjct: 449 DQLLTKLADRLQDVLHLRAHVARIGGDEF-VIILPNIESDSQLI-DTIEDILCLFNRPFE 506

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +S    + I+ S G+A      +   T++  AD A+Y+AKK+GRN    +S
Sbjct: 507 VSKNEPLRISTSVGVARYPQDGQESETLLKNADTAMYLAKKNGRNGYAFYS 557


>gi|118589369|ref|ZP_01546775.1| sensory box/GGDEF family protein [Stappia aggregata IAM 12614]
 gi|118438069|gb|EAV44704.1| sensory box/GGDEF family protein [Stappia aggregata IAM 12614]
          Length = 830

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 21/173 (12%)

Query: 100 ISQLSRIDCLSGLLNHSAFI----SSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVG 151
           +S L+  D L+G+ N S F+    + L   N+     L++   D+D FK +ND  GHP G
Sbjct: 384 VSHLAEHDSLTGIGNRSWFLKQAEAQLEEQNQNGQNTLTLFLIDLDNFKVVNDTSGHPAG 443

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL----RKIIENSQ 207
           D+++  ++ +   +      + R GG+EFAA     S+Q A   A +L    RK     +
Sbjct: 444 DELLRQVASRFTALGEGRTMLARFGGDEFAALGRFVSDQAALAFAEELVAVTRKPFRIGR 503

Query: 208 INISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + + G ++  T       R H  K+ +  ++ +AD ALY AK+ GR R + F
Sbjct: 504 RDFAIGATVGFT-------RLHDSKDTVDDLMRKADIALYKAKEGGRGRSLAF 549


>gi|16331924|ref|NP_442652.1| PleD-like-protein [Synechocystis sp. PCC 6803]
 gi|1001841|dbj|BAA10723.1| sll0779 [Synechocystis sp. PCC 6803]
          Length = 884

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 60/182 (32%), Positives = 89/182 (48%), Gaps = 14/182 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L+E+ I   R++Q   ID L+G+ N   F  +L           E L++V  DIDYFK  
Sbjct: 695 LQEVNIELERLTQ---IDGLTGVYNRRFFDQALEREWQIAFRETESLTLVMLDIDYFKLY 751

Query: 143 NDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND  GH  GD  +  ++  L   V  T   V R GGEEFA     +    A I+A  ++ 
Sbjct: 752 NDTLGHQAGDHCLRIVAAILQESVHRTSDLVARYGGEEFALILPRTDLSGAVIVAQRIKT 811

Query: 202 IIENSQIN-ISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCF 258
           +++   I+  +S  + ++T+S GI     +  +S  + +  AD ALY AKK GRN     
Sbjct: 812 LMDAKAISHPTSEIANYVTVSIGIHCAVPRPGLSLASWVKCADDALYQAKKRGRNGYFVL 871

Query: 259 SD 260
            D
Sbjct: 872 ED 873


>gi|330448603|ref|ZP_08312251.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492794|dbj|GAA06748.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 668

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 89/173 (51%), Gaps = 8/173 (4%)

Query: 98  NRISQLSRIDCLSGLLN----HSAFISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGD 152
            R++ +++ D L+ L N    H   I  L     E ++++F D+D FK +ND++GH +GD
Sbjct: 493 QRLAHIAQHDTLTHLPNREFLHRYLIEKLSMPRLETMAVLFIDLDGFKFVNDSYGHEIGD 552

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  ++ +L++       V RL G+EF A       +E+ +   +      +  INI  
Sbjct: 553 QVLQIVAKKLMISVRQNDIVTRLAGDEFVAVLNPVKTRESILNIGNRIINNISQPINI-K 611

Query: 213 GPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           G  IH+  S G    E      I ++++ AD A+Y +K  G+ R+  F+ ++N
Sbjct: 612 GHMIHVGASIGCYYIESNDVTGIDSVLHCADMAMYQSKMQGKGRITEFNQLKN 664


>gi|325109953|ref|YP_004271021.1| diguanylate cyclase [Planctomyces brasiliensis DSM 5305]
 gi|324970221|gb|ADY60999.1| diguanylate cyclase [Planctomyces brasiliensis DSM 5305]
          Length = 650

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 12/161 (7%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N + F  +L           + + ++F DID FK +ND +GH  GD+V+   +
Sbjct: 345 DPLTGVFNRAYFDKALNDAINHSRDRYQPVGVIFTDIDKFKSLNDTYGHHFGDQVLKTFA 404

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +     +   + R GGEEF       +E+    LA  +R  +E  QI    G  + IT
Sbjct: 405 KVVAGNMRSADVLARYGGEEFVILVSRPTEKGIEKLAERIRATVEK-QIIEEQGTRVSIT 463

Query: 220 ISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S G    I  R  ++    ++  AD+A+Y +K++GRNR  
Sbjct: 464 ASFGAALMIPGRLERDCAQHLLQTADEAMYESKRTGRNRTT 504


>gi|284991825|ref|YP_003410379.1| diguanylate cyclase [Geodermatophilus obscurus DSM 43160]
 gi|284065070|gb|ADB76008.1| diguanylate cyclase [Geodermatophilus obscurus DSM 43160]
          Length = 388

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 9/164 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+GL N    +               +++ +  D+D+FKQ+ND  GH  GD V+
Sbjct: 200 LSHQDPLTGLANRRFLLEQAPRVWRQARREGSRVAAMVLDLDHFKQLNDAHGHAAGDAVL 259

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-- 213
             ++  L         + R GGEE     L S   EA  LA  LR  +  S+ +      
Sbjct: 260 RAVATSLAATVRPSDVLARTGGEELIVLGLVSDPAEAHRLAERLRAAVRTSRTDEGHAVT 319

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            SI I +   +      + +  ++ RAD A+Y AK++GR+RV  
Sbjct: 320 ASIGIALDRPVDGEEAGDAMWRLVDRADGAMYAAKQAGRDRVAA 363


>gi|283785416|ref|YP_003365281.1| signal transduction protein [Citrobacter rodentium ICC168]
 gi|282948870|emb|CBG88472.1| putative signal transduction protein [Citrobacter rodentium ICC168]
          Length = 667

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG  + E   +  R+  L+  D ++GL N +A    +      +   ++ IV+ D+D FK
Sbjct: 219 SGIDITEERRAQERLRVLANTDTITGLPNRNAIHELINEAIANASGGQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDL 199
           ++ND +GH  GD+++  +S  L+        + RLGG+EF   A  +S+    A+ +  L
Sbjct: 279 KVNDAYGHMFGDQLLQAVSLALLSCLEENQILARLGGDEFIVLASHTSQSSLEAVASRIL 338

Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            ++ +  +I +   P ++   S GIA    H E   ++I  AD A+Y AK+ GR +   F
Sbjct: 339 TRLRQPFRIGL---PEVYTGCSVGIAMAPQHGEDSHSLIRNADTAMYTAKEGGRGQFCVF 395

Query: 259 S 259
           S
Sbjct: 396 S 396


>gi|229514820|ref|ZP_04404281.1| diguanylate cyclase with PAS/PAC sensor [Vibrio cholerae TMA 21]
 gi|229348800|gb|EEO13758.1| diguanylate cyclase with PAS/PAC sensor [Vibrio cholerae TMA 21]
          Length = 326

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 86/173 (49%), Gaps = 23/173 (13%)

Query: 99  RISQLSRIDCLSGLLNHSAF----------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           ++ QLS+ID L+ + N   F           S LG     +SI+  DIDYFK+ ND +GH
Sbjct: 155 KLEQLSKIDGLTKISNRRYFDIKLDEIWREYSRLG---HPVSIILIDIDYFKRYNDIYGH 211

Query: 149 PVGDK----VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GD     V   L +Q   V      V R GGEEFA  +    + +A  LA  +R  ++
Sbjct: 212 QAGDHCLCSVAGALKNQAKRVND---IVARYGGEEFAVISCTDID-DAFELAEKMRLAVQ 267

Query: 205 NSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  I         ++IS GIA       + IS++I +ADQALY +K +GRN+ 
Sbjct: 268 SLSIEHKLSDKKIVSISLGIASTIPSRDKDISSLIEKADQALYESKGNGRNKT 320


>gi|90020314|ref|YP_526141.1| response regulator receiver domain-containing protein [Saccharophagus
            degradans 2-40]
 gi|89949914|gb|ABD79929.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 1526

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 91/191 (47%), Gaps = 31/191 (16%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLN----HSAFISSLGSYNE--------------KLS 130
            IL+E   + +++ Q S  D L+GL N    +++ ++ +   N                L 
Sbjct: 1295 ILQE---ANDKLEQASLTDSLTGLRNRRFLNNSIVADIAIANRAYKGWVKGDAPLASDLI 1351

Query: 131  IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
             +  DID FK+IND +GH  GD+++  +S QL  +     +  R GGEEF       + +
Sbjct: 1352 FIVLDIDCFKEINDTYGHRSGDRMLEQISQQLRSLLRESDYAIRWGGEEFLLVIRFVARE 1411

Query: 191  EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH----KEPIS----TIIYRADQ 242
             A  +   +R  IE  +  + +G  I  T S G A  C+     EP +     +I  AD+
Sbjct: 1412 GAEEVVERIRSTIEAFEFELDNGEKIKRTCSMGYA--CYPFIRAEPTALSWEQVIDGADR 1469

Query: 243  ALYVAKKSGRN 253
            ALY+AK SGRN
Sbjct: 1470 ALYIAKSSGRN 1480


>gi|26987880|ref|NP_743305.1| GGDEF domain-containing protein [Pseudomonas putida KT2440]
 gi|24982585|gb|AAN66769.1|AE016305_4 GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 754

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 94/184 (51%), Gaps = 18/184 (9%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
           +L +L  +   + Q +  D L+ LLN   F        +    S N +L+++F DID+FK
Sbjct: 275 LLSQLDQARASLQQAAHYDALTNLLNRRGFNQVFAERLVEHQASEN-RLAVMFLDIDHFK 333

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND+ GH  GD+++  +++ +         V R GG+EF      +S  EA  LA   +
Sbjct: 334 RINDSLGHDAGDELLKVIANHIKAATRNHDLVARFGGDEFCVVTSLNSRDEARHLA---Q 390

Query: 201 KIIENSQINIS-SGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256
           +I++  +  I   G  + +T S GI+     +  ST   ++  AD ALY +K +GRN + 
Sbjct: 391 RIMQRMKDPIDLGGRRMVMTTSIGIS--IFPDDGSTAEELLKHADLALYQSKDNGRNSLN 448

Query: 257 CFSD 260
            F+D
Sbjct: 449 FFND 452


>gi|110635931|ref|YP_676139.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium sp. BNC1]
 gi|110286915|gb|ABG64974.1| diguanylate cyclase/phosphodiesterase [Chelativorans sp. BNC1]
          Length = 647

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 110/250 (44%), Gaps = 22/250 (8%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG---YIS 86
           Y  I  S  +  ++ +   FL+  G        Y++V  ++L I  +    ++G   ++ 
Sbjct: 149 YAVISISFMLPPLLVVIACFLYQGGFE-----SYLMVLAVALFIAGLIRGAMVGQARFLE 203

Query: 87  GSILK-ELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQI 142
           GS LK E       + Q SR D LSGLLN       I  L   +     +  D+D FK +
Sbjct: 204 GSRLKHEARQIAAEMEQSSREDPLSGLLNRRGLEHAIEGLAETDGPFVTMLIDLDGFKSV 263

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILANDLRK 201
           ND +GH +GD ++  ++ ++         + R+GG+EF       ++      LA DL  
Sbjct: 264 NDTYGHKIGDDLLVRIAHRVGESAPPGAILSRIGGDEFVLLYPERAAPHPPGQLALDLIA 323

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF--- 258
            I +    ++   S+ I    GI  R  K  ++ ++ RAD ALY AK  GRN    F   
Sbjct: 324 AIASPYFLVA---SVRIGACIGIY-RSQKPSLTEMLLRADIALYAAKGRGRNEFCEFDEN 379

Query: 259 --SDIENNTC 266
              ++E   C
Sbjct: 380 LQQELERRQC 389


>gi|332992119|gb|AEF02174.1| hypothetical protein ambt_03100 [Alteromonas sp. SN2]
          Length = 399

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 6/135 (4%)

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           E   ++  DIDYFK IND++GH +GD V+  ++  L         V R GGEEF      
Sbjct: 263 EDYCVIMIDIDYFKSINDSYGHTIGDLVLRGVAKTLQKCVRQNDIVARFGGEEFCIVLPD 322

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALY 245
           +S  +A  +A ++R+ I+     +     I IT S G++  R +    S  I +AD AL+
Sbjct: 323 TSSHQAMRIAENMRETIQ-----VCRFDDIAITCSLGVSSIRFNATTPSEFIDQADLALF 377

Query: 246 VAKKSGRNRVVCFSD 260
            +K  GRNRV  +S+
Sbjct: 378 KSKSLGRNRVTLWSE 392


>gi|330829848|ref|YP_004392800.1| signal transduction family protein [Aeromonas veronii B565]
 gi|328804984|gb|AEB50183.1| Signal transduction family protein [Aeromonas veronii B565]
          Length = 348

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 88/175 (50%), Gaps = 14/175 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           KEL  +  ++  LS  D L+ + N   F +SL    E+       ++++  DID+FKQ N
Sbjct: 160 KELAEANRKLEALSNTDGLTNIGNRRLFDNSLNQAWERCIQTEMPIALIMLDIDHFKQFN 219

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+ +  L+  L      +   V R GGEEF         Q A  +A  ++++
Sbjct: 220 DLYGHVAGDECLRLLAHTLAQSGRRSGELVARYGGEEFVILLPHVERQSAYEIAQHIQRL 279

Query: 203 I-ENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRN 253
           I   +Q +  +   + +T+S G+A      H +P S ++  AD ALY AK SGRN
Sbjct: 280 IFALAQPHAQNATGL-LTVSMGVACLRPSSHWQP-SELVKLADAALYTAKSSGRN 332


>gi|313105738|ref|ZP_07792001.1| hypothetical protein PA39016_000110035 [Pseudomonas aeruginosa
           39016]
 gi|310878503|gb|EFQ37097.1| hypothetical protein PA39016_000110035 [Pseudomonas aeruginosa
           39016]
          Length = 818

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 17/177 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVG 151
           R+S  +  D L+GL N   F   L    E+L       +++F D+D FK +ND  GH  G
Sbjct: 369 RLSWQATHDALTGLTNRREFEYRLQIALERLERNSGRHALMFLDLDQFKLVNDTCGHAAG 428

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  +   L         + RLGG+EF         ++A  +A+ LRK +++     S
Sbjct: 429 DELLRQVCTLLQQGLREGDTLARLGGDEFGILLENCPAEKAVEIADHLRKTVQDLHFTWS 488

Query: 212 SGPSIHITISAGIAERCHKEP-ISTI---IYRADQALYVAKKSGRNRVVCF--SDIE 262
             P  + T+S G+    H  P IST+   +  AD A Y+AK+ GRNRV  F   D+E
Sbjct: 489 GQP-FNCTVSVGLV---HLLPGISTLEEALRSADMACYMAKEKGRNRVQVFHQDDVE 541


>gi|296390786|ref|ZP_06880261.1| hypothetical protein PaerPAb_21643 [Pseudomonas aeruginosa PAb1]
          Length = 827

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 17/177 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVG 151
           R+S  +  D L+GL N   F   L    E+L       +++F D+D FK +ND  GH  G
Sbjct: 369 RLSWQATHDALTGLTNRREFEYRLQIALERLERNSGRHALMFLDLDQFKLVNDTCGHAAG 428

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  +   L         + RLGG+EF         ++A  +A+ LRK +++     S
Sbjct: 429 DELLRQVCTLLQQGLREGDTLARLGGDEFGILLENCPAEKAVEIADHLRKTVQDLHFTWS 488

Query: 212 SGPSIHITISAGIAERCHKEP-ISTI---IYRADQALYVAKKSGRNRVVCF--SDIE 262
             P  + T+S G+    H  P IST+   +  AD A Y+AK+ GRNRV  F   D+E
Sbjct: 489 GQP-FNCTVSVGLV---HLLPGISTLEEALRSADMACYMAKEKGRNRVQVFHQDDVE 541


>gi|289662083|ref|ZP_06483664.1| hypothetical protein XcampvN_03013 [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 975

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 1/122 (0%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+IND++GH VGD V+  +   L        F  R GGEEF  AA+G    +A  
Sbjct: 853 DIDHFKRINDDYGHEVGDAVLFAIGQVLSEQDQAHCFAARHGGEEFLLAAIGLDAAQARA 912

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           L   +R+ + + Q++ + G  +  T S G+A          ++  AD+ LY AK+ GR+R
Sbjct: 913 LFERVRQRLADIQVD-AQGTPVRCTASMGMAMSDEAPSRRELLALADRRLYDAKRQGRDR 971

Query: 255 VV 256
           ++
Sbjct: 972 LI 973


>gi|260774036|ref|ZP_05882951.1| GGDEF family protein [Vibrio metschnikovii CIP 69.14]
 gi|260610997|gb|EEX36201.1| GGDEF family protein [Vibrio metschnikovii CIP 69.14]
          Length = 526

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 79/168 (47%), Gaps = 14/168 (8%)

Query: 98  NRISQLSR---IDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           N ++QL +    D L+ L N       +  L  +    + +  DID+FK IND   H VG
Sbjct: 360 NTVAQLQQDVFTDPLTQLHNRRWLEIKLKDLLLHETSFAFLVVDIDHFKSINDELSHLVG 419

Query: 152 DKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           DK I  +S+ L   F    F G    R GGEEF     G S  +A + A+  R+ I N  
Sbjct: 420 DKAITHVSETLADYFK---FRGASCVRFGGEEFLVILEGCSLDQAIMHADTFRERIVNYD 476

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                G    +T+S GI      E      YRAD+ALY AK +GRN+V
Sbjct: 477 WQTILGER-GLTVSIGITLHRDGENTQRTFYRADKALYRAKANGRNQV 523


>gi|237653803|ref|YP_002890117.1| diguanylate cyclase [Thauera sp. MZ1T]
 gi|237625050|gb|ACR01740.1| diguanylate cyclase [Thauera sp. MZ1T]
          Length = 614

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 88/170 (51%), Gaps = 20/170 (11%)

Query: 101 SQLSRIDCLSGLLNH----------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           S+L R D L+G LN           SA     G+   +L++   DID+FK++ND+ GH  
Sbjct: 447 SRLMRHDQLTGALNRRGLDEMFQTESARAQRRGT---RLAVALLDIDHFKKLNDSLGHKG 503

Query: 151 GDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQ 207
           GD  +  L+ ++V     P  V  R GGEEF       G ++ + A++   L++ +   +
Sbjct: 504 GDDALVHLA-KVVRQHLRPQDVLARYGGEEFVILLPETGDTDAQQALVR--LQREL-TRE 559

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             ++    I IT SAG+      E + + + RAD A+Y AK++GRNRV+ 
Sbjct: 560 FFMAEMQKIVITFSAGVTRLAEGESLESALKRADGAMYQAKQAGRNRVMV 609


>gi|207728332|ref|YP_002256726.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
 gi|206591578|emb|CAQ57190.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
          Length = 677

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 91/171 (53%), Gaps = 12/171 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPV 150
           +Y ++  L   D L+GL N +AFI  L +        + ++++  +D+FK +N+  GH +
Sbjct: 244 TYEQLRLLETKDSLTGLPNRAAFIERLDARLALPSTGQAALLYVGLDHFKTVNEAMGHHI 303

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           G++V+   + ++    G    + RLGG++F  A    + ++A  LA    +I++      
Sbjct: 304 GNQVLNVAAHRIRADVGQRALLARLGGDQFCVAI--DAPEQAETLAQ---QILDALAKPF 358

Query: 211 SSGP-SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             G   +H++ S G+A         +T++ RA+ A+Y AK++GRNR+  +S
Sbjct: 359 PGGEREVHLSASVGVAMFPEDGSDAATLVSRAEAAMYRAKENGRNRMARYS 409


>gi|116048784|ref|YP_792416.1| hypothetical protein PA14_53140 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115584005|gb|ABJ10020.1| hypothetical protein PA14_53140 [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 823

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 17/177 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVG 151
           R+S  +  D L+GL N   F   L    E+L       +++F D+D FK +ND  GH  G
Sbjct: 374 RLSWQATHDALTGLTNRREFEYRLQIALERLERNSGRHALMFLDLDQFKLVNDTCGHAAG 433

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  +   L         + RLGG+EF         ++A  +A+ LRK +++     S
Sbjct: 434 DELLRQVCTLLQQGLREGDTLARLGGDEFGILLENCPAEKAVEIADHLRKTVQDLHFTWS 493

Query: 212 SGPSIHITISAGIAERCHKEP-ISTI---IYRADQALYVAKKSGRNRVVCF--SDIE 262
             P  + T+S G+    H  P IST+   +  AD A Y+AK+ GRNRV  F   D+E
Sbjct: 494 GQP-FNCTVSVGLV---HLLPGISTLEEALRSADMACYMAKEKGRNRVQVFHQDDVE 546


>gi|90420642|ref|ZP_01228549.1| GGDEF domain protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90335370|gb|EAS49123.1| GGDEF domain protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 580

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 100/216 (46%), Gaps = 30/216 (13%)

Query: 55  LTPFYGLEYILVENLS--LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112
           L P  G +Y   + L   L +++  I L L  +    L+E       + +++  D L+GL
Sbjct: 367 LEPRDGEDYDPNQTLEIYLKMLAENIGLALANLR---LRET------LREMAMADPLTGL 417

Query: 113 LNHSAFISSLG---SYNEKL----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N  A  S      +  E+L    S V  DID+FK+ ND+ GH  GD V+  + + L  V
Sbjct: 418 ANRRALDSRFAFEVAETERLGRSFSCVMLDIDHFKRFNDDHGHDAGDAVLRAVGETLTGV 477

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS---GPSIHITISA 222
                 V R GGEEF     G   ++A      +R+ I    IN      GP   IT+S 
Sbjct: 478 TREAGMVFRYGGEEFVLLMPGLDCEQARERGEVVRQAINALTINHEGEVLGP---ITVSL 534

Query: 223 GIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G+A   E C +   S ++  AD AL  AK +GRNR+
Sbjct: 535 GLASAPEHCAR---SRLVQVADAALLEAKAAGRNRI 567


>gi|226942211|ref|YP_002797284.1| GGDEF domain-containing protein [Azotobacter vinelandii DJ]
 gi|226717138|gb|ACO76309.1| GGDEF domain protein [Azotobacter vinelandii DJ]
          Length = 464

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 7/163 (4%)

Query: 107 DCLSGLLNHS------AFISSLGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ +LN        A   +    NE+  +++  DID FK IND FGH  GD V+  L+
Sbjct: 301 DVLTHMLNRKFLPVILAKEVAYARQNERSFAVLAVDIDRFKHINDEFGHEAGDVVLQQLA 360

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L        +V R+GGEEF    +  ++  A  +A  LR+     +  +     + +T
Sbjct: 361 SLLSNHCRGGDYVFRMGGEEFLVLLVDVTQAHALGVAEKLRQQAAQERFRLPGEQDLQLT 420

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +S G+A          ++ +AD+ALY AK  GRN+VV    ++
Sbjct: 421 VSIGVALHDGHPDYQHLLRQADRALYEAKHGGRNQVVLARKLD 463


>gi|330967255|gb|EGH67515.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 424

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 32/228 (14%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F+ L    +   +L I+   + L+   I+ ++  E +       Q++  D L+GL    A
Sbjct: 198 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 247

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
               +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        R GG
Sbjct: 248 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGRAYRYGG 307

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218
           EEFA      +  E       +R+ I N  I   N  S P                S+ +
Sbjct: 308 EEFAIVFAAKTIDECMPHLEAIRETIANYAIQLRNKDSRPQDDQQGRQRRSGAHEASVSV 367

Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           T+S G+AER   H+ P   ++  ADQALY AK +GRN VV +  +   
Sbjct: 368 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 414


>gi|257482526|ref|ZP_05636567.1| PAS:GGDEF [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289626594|ref|ZP_06459548.1| PAS:GGDEF [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289649855|ref|ZP_06481198.1| PAS:GGDEF [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298484695|ref|ZP_07002798.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160835|gb|EFI01853.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320326749|gb|EFW82794.1| oxidoreductase domain-containing protein [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320331277|gb|EFW87220.1| oxidoreductase domain-containing protein [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330867966|gb|EGH02675.1| PAS:GGDEF protein [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330988029|gb|EGH86132.1| PAS:GGDEF protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331012827|gb|EGH92883.1| PAS:GGDEF protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 332

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 2/129 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+ +  DID FK +ND +GH  GD V+  +++            GR+GGEEFAA   G +
Sbjct: 203 LAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCA 262

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVA 247
              A  +A  L++ I+      S G +  IT S G+     ++  + T+  RAD A+Y A
Sbjct: 263 PDMAMQIAERLQREIQRQNFQ-SGGTTFSITASQGLTNLGPEDSSLETLYGRADAAMYQA 321

Query: 248 KKSGRNRVV 256
           K+ G+N++V
Sbjct: 322 KRQGKNQIV 330


>gi|209552242|ref|YP_002284157.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209539354|gb|ACI59286.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 298

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 1/125 (0%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +   DID FK IND  GH  GD V+   + ++          GR+GGEEF  A  G++ +
Sbjct: 172 LAVLDIDNFKHINDRLGHHAGDLVLKDFAQRIHQHVRRSDCFGRVGGEEFVLAMPGTALE 231

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +A  +   +  +I  S+  ++  P    T SAG+A    ++  + +  RADQALY AK  
Sbjct: 232 DAVEIIETMLTMIRFSR-PLTESPDFAYTCSAGVAASLREDTAAELYRRADQALYAAKLG 290

Query: 251 GRNRV 255
           GR+RV
Sbjct: 291 GRDRV 295


>gi|163802198|ref|ZP_02196093.1| hypothetical protein 1103602000603_AND4_17439 [Vibrio sp. AND4]
 gi|159174003|gb|EDP58813.1| hypothetical protein AND4_17439 [Vibrio sp. AND4]
          Length = 815

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 93/171 (54%), Gaps = 12/171 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL------GSYNEKL-SIVFFDIDYFKQINDNFGHPVG 151
           ++ +++  D L+ L N +  I+ L      G  N+ + + +F D+D+FK IND+ GH  G
Sbjct: 389 KLQRMAFYDPLTNLPNRTHLINLLEQHIENGHKNQHIFATLFLDLDHFKHINDSMGHFCG 448

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQIN 209
           D+++  L ++L  V      V R+GG+EF    L + + E+ ++ + +  I+   N    
Sbjct: 449 DQLLTKLGERLQDVLHLRAHVARIGGDEF-VVVLPNIDSESQLI-DTIEDILSLFNHPFE 506

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +S+  S+ I+ S G+A      +   T++  AD A+Y+AKK+GRN    +S
Sbjct: 507 VSNNESLRISTSIGVARYPQDGQDSETLLKNADTAMYLAKKNGRNGYAFYS 557


>gi|78356844|ref|YP_388293.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219249|gb|ABB38598.1| diguanylate cyclase (GGDEF domain) [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 157

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 2/128 (1%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +   D+D FK +ND +GHP GD+V+  ++  L           R GGEEFA    G+S  
Sbjct: 1   MAALDLDDFKAVNDVYGHPCGDEVLVHVAHHLASGKRAYDVAARTGGEEFALILPGASAV 60

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAK 248
            A ++   L   +  + +  +    +HIT SAG+A      P S   ++  AD+ALY AK
Sbjct: 61  TARLMVERLLAALRAAPVRCAGTGPLHITFSAGVAVCKGSIPCSAEKLMAFADEALYEAK 120

Query: 249 KSGRNRVV 256
           ++G+NRV+
Sbjct: 121 RAGKNRVM 128


>gi|332991574|gb|AEF01629.1| putative response regulator [Alteromonas sp. SN2]
          Length = 319

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 3/131 (2%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187
           LS+V FD+D FK+ ND +GH  GD  +  LS  +      PM  + R+GGEEF      +
Sbjct: 175 LSLVLFDVDDFKRFNDRYGHMEGDSCLWRLSKAINDSLLRPMDKLVRVGGEEFLVILPST 234

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALY 245
            ++ A ++AN L + + N  I  +      +TISAG+A +     + I   + +AD++LY
Sbjct: 235 DKKGAKLVANRLLETVFNLNIPHADSNLARVTISAGVATKNPDDNKTIDFTMLQADKSLY 294

Query: 246 VAKKSGRNRVV 256
            AK  GRN VV
Sbjct: 295 AAKGQGRNCVV 305


>gi|304310088|ref|YP_003809686.1| response regulator with GGDEF domain [gamma proteobacterium HdN1]
 gi|301795821|emb|CBL44020.1| response regulator with GGDEF domain [gamma proteobacterium HdN1]
          Length = 462

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 81/172 (47%), Gaps = 17/172 (9%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y+ + +LSR D L+ L N   F        S      + LSI   D+D+FKQ ND +GH 
Sbjct: 285 YHNLERLSREDALTELANRRHFGECLQHEWSRCQRDQKPLSIALLDVDFFKQYNDIYGHQ 344

Query: 150 VGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQ 207
            GD+ +  ++  L      P   VGR GGEEF      + +EQ  AIL     +I   + 
Sbjct: 345 AGDRCLIAIAQALRKEASRPGELVGRYGGEEFILLYPNTQAEQFLAILERIQERIRALAL 404

Query: 208 INISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            +  S  +  +TIS G A        H E    +I  AD  LY AKK+GRNR
Sbjct: 405 AHEGSRVAKTVTISIGAATVLPTRAAHTE---KLIGLADTLLYRAKKNGRNR 453


>gi|299533475|ref|ZP_07046855.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298718532|gb|EFI59509.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 398

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 87/165 (52%), Gaps = 10/165 (6%)

Query: 107 DCLSGLLNHSAFISSLGSY--NEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ LLN  AF+ +  S   +++L   ++V  DID+FK INDN+GH  GD+V+  L+  
Sbjct: 230 DSLTRLLNRRAFMEAAESRLADQRLVPWAVVAVDIDHFKYINDNWGHAAGDQVLQQLAQL 289

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQ--EAAILANDLRKIIENSQINISSGPSIHIT 219
           L         V R GGEEF    L S  Q  EA  +   +R+ ++ SQ+       + +T
Sbjct: 290 LTQQVRDCDLVARFGGEEF--VLLLSRVQLFEAQAIVERVRERLQ-SQVLGGLAAQLRVT 346

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            S GIA     + +   + RAD  LY AKK+GR+ V+  +  E+ 
Sbjct: 347 ASFGIAALSSAQDLEQALARADALLYQAKKAGRDCVMSSAQDESE 391


>gi|256829884|ref|YP_003158612.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
 gi|256579060|gb|ACU90196.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
          Length = 290

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 87/171 (50%), Gaps = 14/171 (8%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            QL+  D L+GL N ++F   L         ++  L+++F DID FK IND++GH +GD 
Sbjct: 122 QQLALQDVLTGLPNRASFEQGLAHGLIQAKRHDWGLAVLFIDIDKFKNINDSYGHDMGDH 181

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL-RKIIENSQINIS 211
           V+  L+++L         V R GG+EF    L    E +   +A  L  +I E  + N  
Sbjct: 182 VLRTLANRLKSFVRGADMVSRWGGDEFVCLLLEVKQESDVTRIAEQLVTRIAEPCEFN-- 239

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDI 261
            G  + IT S GIA          I+++ AD A+Y AK S +NRVV F  I
Sbjct: 240 -GTVLSITSSIGIAMYPEDGKTVDILFKNADMAMYEAKGS-KNRVVLFRTI 288


>gi|254252174|ref|ZP_04945492.1| hypothetical protein BDAG_01390 [Burkholderia dolosa AUO158]
 gi|124894783|gb|EAY68663.1| hypothetical protein BDAG_01390 [Burkholderia dolosa AUO158]
          Length = 494

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S L+EL  +  ++  ++  D ++G  N   FI+ +               ++  D+D FK
Sbjct: 317 SALQELRRTNQKLEYMAATDPMTGASNRRQFIAQVEREIVRAERDGTPFCLLALDLDNFK 376

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH +GD+V+  +  Q +        + R+GGEEF A       + A + A  +R
Sbjct: 377 HINDAYGHQIGDEVLRGVVRQCLEAIRPAGGLARVGGEEFMALLPEMPLEGARMTAERVR 436

Query: 201 KIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             I ++   +     + +T+S G+A+       +  ++   D+ LY AK+ GRNRVV 
Sbjct: 437 SSIASAPFGLDFK-RVQVTVSVGVAQYGVDGSTVDALLRVVDERLYQAKREGRNRVVA 493


>gi|160899485|ref|YP_001565067.1| diguanylate cyclase [Delftia acidovorans SPH-1]
 gi|160365069|gb|ABX36682.1| diguanylate cyclase [Delftia acidovorans SPH-1]
          Length = 356

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 86/186 (46%), Gaps = 23/186 (12%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------------ISSLGSYNEKLS---IVFFDI 136
           ++ +Y  +   S  D L+GLLN   F             ++  G   E +    +   DI
Sbjct: 159 VYHNYQSLLDYSERDALTGLLNRKTFDEQFLRLSLQEAPMAMPGVATEDVPGQWLAAIDI 218

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND FGH  GD+V+  +++ L   F     V R GGEEF       S   A    
Sbjct: 219 DHFKRINDRFGHLYGDEVLILVANILRSCFDAKDRVFRFGGEEFVVLLRSVSLVNARKAL 278

Query: 197 NDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             LR  +E+ +      P +  IT+S G A      P+  ++  ADQALY AK+ GRN+ 
Sbjct: 279 ERLRHDVESYEF-----PQVGRITVSTGFAAMGTGAPVE-VLGHADQALYHAKEHGRNQT 332

Query: 256 VCFSDI 261
             + D+
Sbjct: 333 WYYGDL 338


>gi|86739084|ref|YP_479484.1| diguanylate cyclase [Frankia sp. CcI3]
 gi|86565946|gb|ABD09755.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Frankia sp.
           CcI3]
          Length = 1340

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 6/155 (3%)

Query: 104 SRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           +R D L+GL N +AF   L    +    ++++F D+D FK +ND FGH  GD+V+  +S 
Sbjct: 456 ARHDVLTGLCNRTAFEEQLEDALAAAGGVAVLFIDLDSFKPVNDTFGHAAGDRVLQVISG 515

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
           ++  + G     GR GG+EF    L ++E  A  +A   R I    +  +  G  + +  
Sbjct: 516 RIRTLLGPDDVAGRFGGDEFGVLLLRANEIAARTMAG--RVIRAVREPILVDGYEVCVAA 573

Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNR 254
           S G+A    +   S  + R AD+A+Y AK++G  R
Sbjct: 574 SIGVALAVSRPSHSGRLLRAADEAMYKAKQAGPGR 608



 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 107  DCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            D L+GL N +A   F+  L       +++  D+D FK IND FGH VGD V+  ++ +L 
Sbjct: 1131 DPLTGLPNRAALTEFLDQLAREQTPFAVLLIDLDDFKPINDTFGHQVGDDVLCTVATRLA 1190

Query: 164  VVFGTPMFVGRLGGEEFAAAALGSSE 189
             V      V   G  E    AL   E
Sbjct: 1191 DVLAPGPSVASAGPVEPIGPALIDPE 1216


>gi|78062448|ref|YP_372356.1| diguanylate cyclase [Burkholderia sp. 383]
 gi|77970333|gb|ABB11712.1| diguanylate cyclase [Burkholderia sp. 383]
          Length = 492

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 10/188 (5%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIV 132
           ++L ++ G+ L+    + + +  L+R D L+GL N  +F   L     +        S++
Sbjct: 300 IVLSFMLGTQLRRRMRAESELVMLARTDGLTGLNNRRSFGEVLDLEWRRARRARSVFSLL 359

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQE 191
           F D+D FK  ND +GH  GD  +  ++  +      P     R GGEEF      +    
Sbjct: 360 FVDVDRFKAFNDTYGHQAGDDALTAVARCIGDNIRRPADTAARYGGEEFVVILPDTPATG 419

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKK 249
           A  +A  +R  I+   I  +      +T S G+A    ++   + ++I  AD+ALY AK+
Sbjct: 420 ATEIAERIRAAIDGLAIEHAESEFGRVTASIGVASWAPEQEGEVESVIKAADEALYHAKE 479

Query: 250 SGRNRVVC 257
           +GRN+V  
Sbjct: 480 TGRNKVAS 487


>gi|148265765|ref|YP_001232471.1| diguanylate cyclase [Geobacter uraniireducens Rf4]
 gi|146399265|gb|ABQ27898.1| diguanylate cyclase with GAF sensor [Geobacter uraniireducens Rf4]
          Length = 681

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 13/168 (7%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +LS  D L+GL N     + L         +   L+ +F D+DYFK  ND  GH  GD+
Sbjct: 499 EKLSVTDPLTGLYNRRFLKNRLEEELNRSVRHGLNLTFLFIDLDYFKIYNDFCGHLAGDE 558

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212
            +   +D +         V R GGEEF A   G+S++E+ ++A  +R  IE        S
Sbjct: 559 ALKKTADIIKASLRDMDIVARYGGEEFCAILPGTSKKESIVVAERIRVGIEKEIFPEEES 618

Query: 213 GPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            P   +T S GIA   E  H    +++++ AD ALY AK +GRN+++ 
Sbjct: 619 LPLGKLTASLGIASFPEDGH--TFTSLVHAADVALYEAKANGRNQIIA 664


>gi|330965717|gb|EGH65977.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 398

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 23/216 (10%)

Query: 62  EYILVENLSLVIISITISLLLGYI---SGSILKELFISYNRISQL-----SRIDCLSGLL 113
           ++++ +  +L+ +S  + LL+        S L  LF    R+ Q+     +R D L+ L 
Sbjct: 184 DFVIWQANALLFVSTVMLLLMASYFLERASRLSYLFALRGRLLQVQLLEFARTDALTRLF 243

Query: 114 NHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N       L S  E+       ++I+  DID+FK  NDN+GHP GD  +  L   +    
Sbjct: 244 NRRYQDEVLTSVWERARKKPANVAIILLDIDHFKSYNDNYGHPQGDVCLKLLCKAIQQSA 303

Query: 167 GTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGI 224
                V  R GGEE     + +   +A  +A  L+  +   ++ + + G   H+TIS G+
Sbjct: 304 NDGGAVAFRFGGEE-VLVLMNADAGQATKMAETLKATVAALKLPHPALGEDAHVTISLGV 362

Query: 225 AERCHKEPI---STIIYRADQALYVAKKSGRNRVVC 257
           A      P+    T+I  AD ALY AK +GRN V C
Sbjct: 363 AS--GIAPLITYDTLISAADNALYAAKHAGRNCVFC 396


>gi|317470731|ref|ZP_07930116.1| GGDEF domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901866|gb|EFV23795.1| GGDEF domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 483

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 16/154 (10%)

Query: 107 DCLSGLLNHSAFISSLGS---YNEKLSIVFF-DIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+G++N   F   L      N+K    FF D+D FK+IND +GH  GD+V+  ++  L
Sbjct: 336 DVLTGVINRKYFQKLLEKDLKRNKKYRACFFLDVDDFKRINDTYGHQKGDEVLTAVARHL 395

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEA--AILANDLRKIIENSQINISSGPSIHITI 220
                    V R GG+EF     G +E+E    I    LR++             +H+ I
Sbjct: 396 EKNLREKDVVSRYGGDEFTCLIYGITEKEKIREIAGRILREVT----------GKVHVNI 445

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           S GI      +    II RAD ALY AK  G+N+
Sbjct: 446 SMGITLIQDNDSYEQIIERADGALYEAKVRGKNQ 479


>gi|308049288|ref|YP_003912854.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
 gi|307631478|gb|ADN75780.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
          Length = 732

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 12/185 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           +L  +  +++Q +  D L+G  N   F  S     +        L++   DID+FK IND
Sbjct: 542 QLEAANQKLAQQAHRDGLTGAYNRRYFDLSFEVARQHCVRSGSHLALALIDIDHFKSIND 601

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           + GH VGD  +  L   +   FG  +  + R GGEEF      S   E       LR+ +
Sbjct: 602 SHGHLVGDDCLKNLVSLIHRYFGRKLDLLARYGGEEFVLLLPQSDADEVLRRLESLRRTV 661

Query: 204 ENSQINISS-GPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             S ++ S+ G  ++ITIS G  +    +    S  +  AD ALY AK  GRNR +C ++
Sbjct: 662 AQSAVSESADGEPLYITISIGVLVTHPQYSSQQSDWLMAADSALYQAKSGGRNR-LCRAE 720

Query: 261 IENNT 265
             + +
Sbjct: 721 TSDQS 725


>gi|296449497|ref|ZP_06891274.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296878180|ref|ZP_06902195.1| probable signaling protein [Clostridium difficile NAP07]
 gi|296261561|gb|EFH08379.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296430933|gb|EFH16765.1| probable signaling protein [Clostridium difficile NAP07]
          Length = 838

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 13/165 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPV 150
           NR+    + D L+ + N +A+I  L + N       +  +++  DIDYFK IND +GH V
Sbjct: 675 NRLLDKVQRDSLTNIYN-AAYIRKLTAQNLLNLSTEKNGALLIIDIDYFKSINDTYGHLV 733

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQIN 209
           GDK++  ++  L   F     VGRLGG+EF+         E  I   ND+   I    I 
Sbjct: 734 GDKILIDVAKVLDESFTKDDIVGRLGGDEFSVYINDIINNEELINKCNDVYNRIH--LIK 791

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + +G S+ I++   IA +C +E    +   AD ALY +K+ GRNR
Sbjct: 792 LPNGKSLSISMGVVIA-KCGQE-YDELYQIADNALYDSKREGRNR 834


>gi|294141998|ref|YP_003557976.1| sensory box protein [Shewanella violacea DSS12]
 gi|293328467|dbj|BAJ03198.1| sensory box protein [Shewanella violacea DSS12]
          Length = 1018

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 21/174 (12%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I + +  D L+GL N    +  LG+         + L+++F D+DYFK++ND  GH VGD
Sbjct: 577 IWKQANYDPLTGLPNRRMLLEYLGTELLKSDRNKQHLALMFLDLDYFKEVNDTLGHDVGD 636

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIE-----N 205
            ++   + +L         V RLGG+EF    +A+   +    + AN L ++ E     N
Sbjct: 637 LLLVETAKRLKSCIRESDVVARLGGDEFTLVLSAIDDHKGVDRVAANILTRLSEPFNLGN 696

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               IS+  SI IT+    A       I +++  ADQA+Y AK  GRNR   F+
Sbjct: 697 DTAFISA--SIGITLYPDDA-----SSIESLLKHADQAMYAAKDLGRNRFHYFT 743


>gi|217969943|ref|YP_002355177.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
 gi|217507270|gb|ACK54281.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
          Length = 472

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 9/163 (5%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL N   F       ++  G    +L ++ FD+D FK IND+FGH  GD+V
Sbjct: 286 ELAERDELTGLYNRRRFHEELGRMLADAGRRGSRLGLLAFDLDGFKPINDSFGHQAGDEV 345

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  L+ +L         + R+GG+EFA      S +    LA+ L + +   +  +  G 
Sbjct: 346 LVRLARELGRTVRRNETLFRIGGDEFALLVPEGSTEGLCELAHRLVETVGAMRF-VFEGR 404

Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  +T S GIA    +      ++  AD+ALY AK  GRNR  
Sbjct: 405 AARVTASVGIARFPDNAREGEALVAAADEALYRAKSEGRNRAA 447


>gi|148358610|ref|YP_001249817.1| GGDEF/EAL domain-containing sensory box protein [Legionella
           pneumophila str. Corby]
 gi|148280383|gb|ABQ54471.1| sensory box protein, EAL domain, GGDEF domain, signal transduction
           protein [Legionella pneumophila str. Corby]
          Length = 371

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 25/224 (11%)

Query: 48  IFLFYIGLTPFYGL--EYIL-VENLS-LVIISITISLLLGYISGS-----ILKE----LF 94
           +F FYI   P Y +  EY+  ++N + L I ++  ++L  ++  +     +LKE    L 
Sbjct: 143 VFEFYI---PIYSISQEYVFFLDNTNHLFIFALIFTVLYHFLVQNSQYELLLKEQNYLLI 199

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
               +   LS  D L+ L N   F + L        +  E +++ F D+D FK IND +G
Sbjct: 200 ADKEKFHYLSHHDSLTNLPNRPYFHAHLQTLLENTDTKKEAITLYFMDLDKFKPINDEYG 259

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+++   S +L   F    F+ RLGG+EF A  +       A  A  LR   E  Q
Sbjct: 260 HEFGDQLLLLTSKRLQSCFRKNDFIARLGGDEFTAIIVHKPLDHIA-EALTLRIEQEFEQ 318

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250
             + +G +IH TIS GIA      +    ++  AD+A+Y  K+ 
Sbjct: 319 PFVINGQTIHCTISVGIANYPRNAKNAEDLLKWADKAMYDNKRK 362


>gi|186473289|ref|YP_001860631.1| diguanylate cyclase [Burkholderia phymatum STM815]
 gi|184195621|gb|ACC73585.1| diguanylate cyclase [Burkholderia phymatum STM815]
          Length = 505

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 12/204 (5%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L  +Y +  + V   S  +IS+ +  L  +I+  ILK L     ++ +L+  D L+GL N
Sbjct: 295 LDDYYRMRRVYVTMAS--VISLILVGLSTWIAALILK-LLKGREQLHRLAHTDRLTGLSN 351

Query: 115 HSAFISSLGSYNE------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
               +  L           +++ +F D+D FK++ND FGH +GD ++  ++ +L  V   
Sbjct: 352 RGCIMDLLDEAVAAPDAVGRVAAIFVDLDRFKELNDTFGHHLGDTILVEIARRLKEVAQG 411

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
               GRLGG+EF   + G  E  A I+A  +   +E+    +  G +  +  S GIA   
Sbjct: 412 RAQTGRLGGDEFLVVS-GDGEASARIIAEAITAALESPV--VVHGHAYRVCASLGIAVLQ 468

Query: 229 HKEPISTIIYRADQALYVAKKSGR 252
             E  + ++  AD+ +Y AK+  R
Sbjct: 469 RGERAADLVKAADRVMYEAKERSR 492


>gi|114047809|ref|YP_738359.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113889251|gb|ABI43302.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 726

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 8/138 (5%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAA 184
            + +++V  D+DYFK++ND +GH  GD+ +  +++ L   F   +  + R GGEEF    
Sbjct: 586 QDAIAVVLLDLDYFKKVNDTYGHLAGDECLRVMAEVLSRHFKRDVDLLCRYGGEEFILIL 645

Query: 185 LGSSEQEAAILANDLRK-----IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
              +  +     ND R+     II N    ++   S+ ++I A IA+  +   +   + +
Sbjct: 646 PMCNSLKVEQHLNDFREKLASVIITNPADQVTF--SVTVSIGAIIADATYSTTLDVWLKQ 703

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD+ LY AK+ GRNRVVC
Sbjct: 704 ADENLYKAKEQGRNRVVC 721


>gi|91778026|ref|YP_553234.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
 gi|91690686|gb|ABE33884.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
          Length = 689

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 15/167 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            +I +L+ +D L+GL N +         I          +++F D+D FK IND+ GH  
Sbjct: 253 GQIVRLATLDSLTGLPNRATLTERIEHAIHRAQRQRSLCAVLFMDLDGFKTINDSLGHSA 312

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILANDLRKIIENSQI 208
           GD+V+   + +L++       V RLGG+EF   A  LGS E   A+       ++E  ++
Sbjct: 313 GDQVLTAFAQRLLLCVRASDTVARLGGDEFVVLAEDLGSREDAGALAEG----VLERMRM 368

Query: 209 NI-SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
            + +    + +  S GIA   H  + + +++  AD A+Y AK++GR+
Sbjct: 369 GMWTDSQPLQVMPSIGIALFPHDGDTVDSLLKNADAAMYEAKRAGRS 415


>gi|330874805|gb|EGH08954.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 432

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 32/228 (14%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F+ L    +   +L I+   + L+   I+ ++  E +       Q++  D L+GL    A
Sbjct: 206 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 255

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
               +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        R GG
Sbjct: 256 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGRAYRYGG 315

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218
           EEFA      +  E       +R+ I N  I   N  S P                S+ +
Sbjct: 316 EEFAIVFAAKTIDECMPHLEAIRETIANYAIQLRNKDSRPQDDQQGRQRRSGAHEASVSV 375

Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           T+S G+AER   H+ P   ++  ADQALY AK +GRN VV +  +   
Sbjct: 376 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 422


>gi|241763941|ref|ZP_04761983.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
 gi|241366764|gb|EER61205.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
          Length = 741

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 85/181 (46%), Gaps = 24/181 (13%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----------KLSIVFFDI 136
           S +++      RI  L+  D L+GL N +     LG   E            L++VF D+
Sbjct: 299 SEIRDRKADQERIYWLAHYDALTGLPNRTL----LGERAEHAIRLARESGTPLAVVFLDL 354

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK +ND+ GH VGD ++  ++ +L  V      V RLGG+EF     G++   AA +A
Sbjct: 355 DHFKHVNDSLGHRVGDALLVEIARRLRAVVREKDTVCRLGGDEFVLLLPGANAHGAARVA 414

Query: 197 NDL----RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             L    R+  +     ++  PS+ I +  G       E   T+   AD A+Y AK  GR
Sbjct: 415 GKLQEASRQYYQIDHHELTMAPSMGIALFPGDG-----EDFDTLTQSADVAMYQAKLDGR 469

Query: 253 N 253
           N
Sbjct: 470 N 470


>gi|237734056|ref|ZP_04564537.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229382882|gb|EEO32973.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 477

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL N       +  Y     +  +   DID FK+IND +GHP+GD ++  +   L 
Sbjct: 324 DSLTGLYNRRKLTEEIKRYLKAQSEFGLAILDIDDFKKINDTYGHPIGDIILKEIGQILR 383

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISA 222
              G    VGRLGG+EF    L  + Q   I+   L       ++I I   P I +T S 
Sbjct: 384 DNLG-EYLVGRLGGDEF--VILIENVQIINIVIQKLELTCNQIAKIKIEEHPDIVVTCSC 440

Query: 223 GIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           G+A      E ++ +   AD ALY+AK  G+N++  F
Sbjct: 441 GLAVAPKDGETVAELYKAADSALYIAKSLGKNKLAKF 477


>gi|288573406|ref|ZP_06391763.1| diguanylate cyclase with extracellular sensor [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288569147|gb|EFC90704.1| diguanylate cyclase with extracellular sensor [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 499

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 12/166 (7%)

Query: 98  NRISQLSRIDCLSGLLNH---SAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            R+  LS++D L+G+ N     AF++             +   D+D+FK++ND++GH +G
Sbjct: 323 RRLELLSKMDHLTGIANRFGIEAFLNRAVHKARRGTPFCVAIGDVDHFKRVNDDYGHQIG 382

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  L++  V        VGR GGEEF        E++   +A+ +R+I+  +   + 
Sbjct: 383 DRVLVRLAEIFVDAVRAVDLVGRWGGEEFIIVFDDMVERDLFPVADRIRRIVSENDFGLG 442

Query: 212 SGPSIHITIS-AGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
                 +T+S  G+A     +  ++ ++  AD ALY AK+ GRN V
Sbjct: 443 R----PLTVSFGGVAFPAEGDLSLNDLLRTADDALYKAKEDGRNMV 484


>gi|167756071|ref|ZP_02428198.1| hypothetical protein CLORAM_01591 [Clostridium ramosum DSM 1402]
 gi|167704063|gb|EDS18642.1| hypothetical protein CLORAM_01591 [Clostridium ramosum DSM 1402]
          Length = 477

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL N       +  Y     +  +   DID FK+IND +GHP+GD ++  +   L 
Sbjct: 324 DSLTGLYNRRKLTEEIKRYLKAQSEFGLAILDIDDFKKINDTYGHPIGDIILKEIGQILR 383

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISA 222
              G    VGRLGG+EF    L  + Q   I+   L       ++I I   P I +T S 
Sbjct: 384 DNLG-EYLVGRLGGDEF--VILIENVQIINIVIQKLELTCNQIAKIKIEEHPDIVVTCSC 440

Query: 223 GIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           G+A      E ++ +   AD ALY+AK  G+N++  F
Sbjct: 441 GLAVAPKDGETVAELYKAADSALYIAKSLGKNKLAKF 477


>gi|119896980|ref|YP_932193.1| GGEF/EAL/PAS/PAC-domain-containing protein [Azoarcus sp. BH72]
 gi|119669393|emb|CAL93306.1| GGEF/EAL/PAS/PAC-domain containing protein [Azoarcus sp. BH72]
          Length = 818

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 12/165 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +L+  D L+ L N           +  +    E L+++F DID FK +ND+ GHPVG
Sbjct: 386 RLQRLAHYDALTDLPNRVLLNLRLAHGVERVQRSGEMLAVLFLDIDRFKNVNDSLGHPVG 445

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQIN 209
           D+++  ++ +L         + RLGG+EF    L    + A  +A+  ++II+  N    
Sbjct: 446 DELLIEIARRLRSRIRAEDTLARLGGDEF--VILLDRIRSANDVADFAQEIIDLLNQSFQ 503

Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
           ++SG  + +  S GI+      +  + +I  AD ALY AK++GRN
Sbjct: 504 LASGQEVFVGASIGISLYPLDTDDATQLISNADAALYQAKEAGRN 548


>gi|170736347|ref|YP_001777607.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia cenocepacia MC0-3]
 gi|169818535|gb|ACA93117.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia cenocepacia MC0-3]
          Length = 667

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 17/186 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDID 137
           SG  + E   +  R+++L+  D L+GL N        H+A      +    + I+F D+D
Sbjct: 218 SGIDITEERNAQQRLTELANTDVLTGLPNRHAISERIHAAIAEEDANTRGHVGILFLDLD 277

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE----FAAAALGSSEQEAA 193
            FK++ND++GH  GD+++  +S  +     +   + RLGG+E    F  A     E  A 
Sbjct: 278 NFKRVNDHYGHITGDRLLQDVSAIISGCLPSGATLARLGGDEFLVLFEHATRPLLEATAQ 337

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           I+   LR  I    + + +  SI I +        H + + T+I  AD A+YVAK+ G++
Sbjct: 338 IILERLRTPIHLGLMEVYTSCSIGIAMHP-----QHGDSLETLIRSADTAMYVAKEEGKH 392

Query: 254 RVVCFS 259
               FS
Sbjct: 393 TYRVFS 398


>gi|145226093|ref|YP_001136747.1| diguanylate cyclase [Mycobacterium gilvum PYR-GCK]
 gi|145218556|gb|ABP47959.1| diguanylate cyclase [Mycobacterium gilvum PYR-GCK]
          Length = 371

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 80/168 (47%), Gaps = 26/168 (15%)

Query: 104 SRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           S ID L+GLLN        G        S    ++++  D+D FK +ND  GH VGD+V+
Sbjct: 207 SSIDALTGLLNRRGLYLHFGDLLESNATSTEGTVTVIVVDLDRFKDVNDTHGHAVGDEVL 266

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +  +    G    + R+GGEEFA     ++    A  A  +R+ I       + GP 
Sbjct: 267 VRSARLIAATSGRQALIARIGGEEFAIIDT-TTPSRGAETAEAVRRAIA------AGGPP 319

Query: 216 IHITISAGI--AERC-----HKEP---ISTIIYRADQALYVAKKSGRN 253
             IT S GI  A R      ++ P   + T+I RAD A++ AK++G N
Sbjct: 320 -EITASVGITSANRTDFIASNERPQLVLDTVIARADHAMFCAKRNGGN 366


>gi|113970578|ref|YP_734371.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113885262|gb|ABI39314.1| diguanylate cyclase [Shewanella sp. MR-4]
          Length = 726

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 8/138 (5%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAA 184
            + +++V  D+DYFK++ND +GH  GD+ +  +++ L   F   +  + R GGEEF    
Sbjct: 586 QDAIAVVLLDLDYFKKVNDTYGHLAGDECLRVMAEVLSRHFKRDVDLLCRYGGEEFILIL 645

Query: 185 LGSSEQEAAILANDLRK-----IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
              +  +     ND R+     II N    ++   S+ ++I A IA+  +   +   + +
Sbjct: 646 PMCNSLKVEQHLNDFREKLASVIITNPADQVTF--SVTVSIGAIIADATYSTTLDVWLKQ 703

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD+ LY AK+ GRNRVVC
Sbjct: 704 ADENLYKAKEQGRNRVVC 721


>gi|229142091|ref|ZP_04270616.1| Sensory box protein [Bacillus cereus BDRD-ST26]
 gi|228641380|gb|EEK97686.1| Sensory box protein [Bacillus cereus BDRD-ST26]
          Length = 735

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144
           L+    ++  L+  D L+GL N   F   L         S N+ ++++F D+D FK+IND
Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 354

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
             GH VGD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  I+
Sbjct: 355 RLGHGVGDLLLIEVAKRLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 414

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            N    I     + IT S GIA    C  + ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 415 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTALMKNADMAMYRAKANGKNRFVFFS 469


>gi|298528664|ref|ZP_07016068.1| diguanylate cyclase with PAS/PAC sensor [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512316|gb|EFI36218.1| diguanylate cyclase with PAS/PAC sensor [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 305

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           Y    SI+  DID FK IND  GH  GD+V+  +S+ L         + R GGEEF    
Sbjct: 176 YGRLFSIILMDIDDFKDINDTLGHLAGDRVLYEMSNLLTANTRATDLLCRWGGEEFLLVC 235

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +       LA +LR+++   +    S     ITIS G A    ++   ++I RAD+A+
Sbjct: 236 PETDSSGVRPLAENLRQMVAGHEFECGS----RITISLGAATVRPEDTQDSMIARADKAM 291

Query: 245 YVAKKSGRNRVVC 257
           Y++K  G+N  VC
Sbjct: 292 YLSKSQGKN--VC 302


>gi|218665621|ref|YP_002426126.1| sensory box-containing diguanylate cyclase, putative
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218517834|gb|ACK78420.1| sensory box-containing diguanylate cyclase, putative
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 1057

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 22/231 (9%)

Query: 56  TPFYGLEYILVENLSLVIISITISLLLGYISGSI----LKE-LFISYNRISQLSRIDCLS 110
           TPF  +++I  E +     +     L   +  S+    LKE L +   + ++++R D L+
Sbjct: 544 TPFAVIKFISTEQVFDADTTTACERLASLLGHSLDEHDLKEHLRLLQEQEAKIARTDLLT 603

Query: 111 GLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           GL N           I+    +N+ L++   D+D FK +ND +GH  GD+V+  L  +L 
Sbjct: 604 GLPNRRFLEIQMEQAIARAERHNQLLAVCMLDLDGFKPVNDTYGHGAGDEVLVALGKRLS 663

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQINISSGPSIHITIS 221
                  FV RLGG+EF    L    ++   LAN ++KI +   + I +S+G S+ I  S
Sbjct: 664 EALRKSDFVARLGGDEF--VLLVEDLEDLDDLANIMKKIEDTITAPIPLSNGKSVQIGAS 721

Query: 222 AGIAERCHKEPIS--TIIYRADQALYVAK--KSGRNR--VVCFSDIENNTC 266
            G+A     +  +   ++  ADQA+Y +K  K+ R R  V+   +++   C
Sbjct: 722 MGVALYPFGDTDTGDKLLRLADQAMYESKANKAARERFWVLFGEEVQKEKC 772


>gi|148253069|ref|YP_001237654.1| hypothetical protein BBta_1531 [Bradyrhizobium sp. BTAi1]
 gi|146405242|gb|ABQ33748.1| hypothetical protein BBta_1531 [Bradyrhizobium sp. BTAi1]
          Length = 137

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 68/127 (53%)

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D+FK IND +GH  GDKV+ + +  +++       + R GG+EF      +  +   
Sbjct: 1   MDLDHFKAINDKYGHATGDKVLIYFARHIIMHLRPYDKIFRFGGDEFLIFMPDADLKAGR 60

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            + + LR+ +   +I+ +      +T+S G+       P+   I RAD ALYVAK  GRN
Sbjct: 61  DVVDRLREELGALRIDANGKEMFQVTVSFGLTLLDPDIPVEQSIDRADNALYVAKAMGRN 120

Query: 254 RVVCFSD 260
           RV+ ++D
Sbjct: 121 RVIVWND 127


>gi|119961555|ref|YP_946432.1| GGDEF domain-containing protein [Arthrobacter aurescens TC1]
 gi|119948414|gb|ABM07325.1| putative GGDEF domain protein [Arthrobacter aurescens TC1]
          Length = 392

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 11/167 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN  AF+    +  E+L       S+V  D+D+FK +ND  GH  GD  +   +
Sbjct: 222 DHLTGLLNRGAFLDLATTELERLQSTGSGASVVLADLDHFKAVNDEHGHGAGDVALRAFA 281

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           +       +   +GR GGEEF     G+++  A  +A+++ + +   Q   +    +  T
Sbjct: 282 EACAGSVRSTDLIGRYGGEEFVLFLPGATQDRAENIASEISRRMAAMQ---TPEGVVFPT 338

Query: 220 ISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           +S G+         ++ +I  AD ALY AK  GRNR+V    +E  T
Sbjct: 339 VSYGVTSSIPAVADLNFMIEVADAALYSAKAQGRNRIVGADRLEAAT 385


>gi|89055622|ref|YP_511073.1| response regulator receiver modulated diguanylate cyclase
           [Jannaschia sp. CCS1]
 gi|88865171|gb|ABD56048.1| response regulator receiver modulated diguanylate cyclase
           [Jannaschia sp. CCS1]
          Length = 464

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 6/137 (4%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  D+DYFKQIND +GH  GD V+  ++ +L         V R+GGEEF     G+S 
Sbjct: 325 AVMMLDLDYFKQINDTYGHAAGDAVLQEVAIRLRGQVQANDLVARIGGEEFLVVLSGASA 384

Query: 190 QEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPIST-----IIYRADQA 243
           + A   A  LR  I     ++      + +T S G++     +P +T     +I++AD A
Sbjct: 385 RAATECAERLRACIGGMSFDLGGDTFPVRVTASVGLSLPGSSDPHTTSTPEALIHKADTA 444

Query: 244 LYVAKKSGRNRVVCFSD 260
           LY AK  GR++V    D
Sbjct: 445 LYGAKAHGRDQVSQMCD 461


>gi|28898063|ref|NP_797668.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|260878413|ref|ZP_05890768.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|260896992|ref|ZP_05905488.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|28806277|dbj|BAC59552.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087698|gb|EFO37393.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|308091230|gb|EFO40925.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
          Length = 381

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 13/174 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           +L  +  ++  LS  D L+ L N  + I +L    +        L  +  D DYFKQ+ND
Sbjct: 194 QLLTANKQLEALSLTDSLTQLPNRRSAIKTLKKLWDDTEHKTLPLVCIMIDADYFKQVND 253

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD V+  L+  L   F +   V RLGG+EF      +       +A  +RK + 
Sbjct: 254 TCGHEAGDLVLIELAQALKYHFRSDDIVCRLGGDEFFVICPDTGLDGGLHVAEMVRKQVS 313

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255
              +     P    +IS G+AER   E +ST   +I  AD+++Y+AK+ G+NRV
Sbjct: 314 QMLVPTCYEP-WRGSISVGVAERT--ENMSTYTDLIRAADESVYLAKQEGKNRV 364


>gi|90421842|ref|YP_530212.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
 gi|90103856|gb|ABD85893.1| diguanylate cyclase (GGDEF domain) [Rhodopseudomonas palustris
           BisB18]
          Length = 350

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 80/165 (48%), Gaps = 14/165 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQINDNFGHPVG 151
           +R   L+  D ++GL N   F S+L   +E        +++  D+D FK +ND FGH  G
Sbjct: 162 DRTRYLAEFDVVTGLANRGRFQSTLAQLDEAADARPFGALLLVDLDEFKAVNDCFGHAAG 221

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+ +     ++    G    V R GG+EF  A L  S Q  A ++   R IIE  +  I 
Sbjct: 222 DECLKQAGQRISKACGDARLVARFGGDEF--AVLLGSHQRFAEISEIARSIIEEMRRPIV 279

Query: 212 -SGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
             G  + +  S G+A  + C     S +   AD+ALY AK++GR 
Sbjct: 280 FHGHELQLGASVGVALVDGC---TASQLFVMADKALYAAKEAGRG 321


>gi|291539940|emb|CBL13051.1| diguanylate cyclase (GGDEF) domain [Roseburia intestinalis XB6B4]
          Length = 553

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 14/212 (6%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           Y L   + E      ++  I+ LL Y+  +  KE      ++ Q++  D L+G+ N  A 
Sbjct: 346 YSLRVHIQEKHETGELAAGINELLDYVEQADRKEKE-RQQKLLQMAENDPLTGIKNKKAI 404

Query: 119 ISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPM 170
              + S        +E+++  F DID F+  N N+GH  GD VI F++  L   + G   
Sbjct: 405 EKEMLSMVQRAVESHEQITFGFVDIDDFRDYNTNYGHQEGDAVIQFVAQTLKENIHGA-- 462

Query: 171 FVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAGIA-ERC 228
            VGR+GG+EFA    G  E E     A+ + +I+    +N  +G  + +  S GI   + 
Sbjct: 463 -VGRIGGDEFAFCYAGELEPERIRHNADKILEILRTQHVNEQTGEVLPVPCSIGIVMSQG 521

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                + +I +AD A+Y AK++G+N  V   D
Sbjct: 522 DTLDYTQLIRKADLAMYQAKENGKNTFVLNVD 553


>gi|218885660|ref|YP_002434981.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756614|gb|ACL07513.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 314

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 83/176 (47%), Gaps = 12/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           L+EL  +   ++     D L+GL+N  AF+  +            +L +   D+D FK++
Sbjct: 110 LRELQKAVEELTHQRDHDPLTGLMNRRAFLRQVELELQRVHRGGAELCLAMLDLDDFKRV 169

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD V+  ++D L           R+GGEEF     G+S   A  L   L + 
Sbjct: 170 NDTWGHACGDLVLRRMADLLRDATRAYDVAARIGGEEFVLLLPGASPMRAQALLERLLQD 229

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNRV 255
           + +         +  I+ SAGIA  C    +     ++ RAD+ALY AK SG+ RV
Sbjct: 230 MRDETFECRD-ETFRISFSAGIAG-CKGATVCRAEELLDRADKALYEAKASGKARV 283


>gi|217962838|ref|YP_002341416.1| sensory box/GGDEF family protein [Bacillus cereus AH187]
 gi|217065154|gb|ACJ79404.1| sensory box/GGDEF family protein [Bacillus cereus AH187]
          Length = 604

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 27/184 (14%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144
           L+    ++  L+  D L+GL N   F   L         S N+ ++++F D+D FK+IND
Sbjct: 165 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 223

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
             GH VGD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +    
Sbjct: 224 RLGHGVGDLLLIEVAKRLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQI---- 279

Query: 204 ENSQINISSGP------SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               +NI + P       + IT S GIA    C  + ++ ++  AD A+Y AK +G+NR 
Sbjct: 280 ----LNILNKPFFIKDEELSITPSIGIAMYPDCGTD-VTALMKNADMAMYRAKANGKNRF 334

Query: 256 VCFS 259
           V FS
Sbjct: 335 VFFS 338


>gi|254429501|ref|ZP_05043208.1| GGDEF domain protein [Alcanivorax sp. DG881]
 gi|196195670|gb|EDX90629.1| GGDEF domain protein [Alcanivorax sp. DG881]
          Length = 342

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 9/167 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148
           +++R+S ++  D L+GL N   F+  L          +  L +   D+D+FK++ND +GH
Sbjct: 174 AHDRLSAIAVRDDLTGLYNRRHFLERLEEEMSRANRESSPLHLAIIDLDHFKRVNDTYGH 233

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+V+   +    +       + R GGEEF      +S Q        LR      + 
Sbjct: 234 HAGDEVLHRFAQLAAMGLRKSDLLARYGGEEFVVLFPHTSSQACLAALERLRHSFSEQRY 293

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +    +    SAG+      E     I RAD ALY AK  GRNR+
Sbjct: 294 AFAG--ELSSAFSAGLTHYQPGESAEQFIKRADNALYEAKHLGRNRI 338


>gi|161521236|ref|YP_001584663.1| diguanylate cyclase [Burkholderia multivorans ATCC 17616]
 gi|189352591|ref|YP_001948218.1| putative diguanylate cyclase [Burkholderia multivorans ATCC 17616]
 gi|160345286|gb|ABX18371.1| diguanylate cyclase [Burkholderia multivorans ATCC 17616]
 gi|189336613|dbj|BAG45682.1| putative diguanylate cyclase [Burkholderia multivorans ATCC 17616]
          Length = 492

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 14/193 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128
           I +S+LLG    + L+    + + +  L+R D L+GL N  +F   L     +       
Sbjct: 300 IALSVLLG----AQLRRRMRAESELILLARTDGLTGLNNRRSFGEVLDREWRRARRVRSV 355

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGS 187
            S++F D+D FK  ND +GH  GD  +A ++  +      P  V  R GGEEF      +
Sbjct: 356 FSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADVAARYGGEEFVVLLPDT 415

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALY 245
           +E  AA +A  +R  I    +         +T S G+A     + +    II  AD+ALY
Sbjct: 416 AENGAAQIAERIRIAINELGLEHVGSEFGRVTASIGLASWKPDQDVEPDAIIKAADEALY 475

Query: 246 VAKKSGRNRVVCF 258
            AK +GRN+V  F
Sbjct: 476 YAKATGRNKVTQF 488


>gi|288871697|ref|ZP_06410269.1| putative response regulator/sensory box/GGDEF domain/EAL domain
           protein [Clostridium hathewayi DSM 13479]
 gi|288862380|gb|EFC94678.1| putative response regulator/sensory box/GGDEF domain/EAL domain
           protein [Clostridium hathewayi DSM 13479]
          Length = 290

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 20/177 (11%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQINDN 145
           E  +   +I Q   ID L+GLL   AF  +           +   ++  D+D  K +ND 
Sbjct: 114 EAIVEKQQIEQERDIDLLTGLLTRRAFFRTADQLFADPGRMKTAMLLMMDLDNLKHVNDT 173

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA--AILANDLRKII 203
           +GH  GDK++   +D    +        RL G+EF     G+ E+E   A L   L K I
Sbjct: 174 WGHEYGDKLLKAAADLFAGLKAPEKVAARLSGDEFVLLIYGADEKEELYACLER-LEKSI 232

Query: 204 ENSQINISSGPSIHITISAG------IAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +++ +  G    I++S G      +   C     + +++ ADQA+Y  KKSG+ R
Sbjct: 233 REARLALPEGGEAEISVSGGYLIYPEVGGDC-----TEMLHLADQAMYRVKKSGKGR 284


>gi|269959455|ref|ZP_06173838.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835892|gb|EEZ89968.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 836

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 91/171 (53%), Gaps = 12/171 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
           ++ +++  D L+ L N +  IS L  + E         + +F DID+FK IND+ GH  G
Sbjct: 410 KLQRMAFYDPLTNLPNRTHLISLLEQHIENGQKHQHAFATLFLDIDHFKHINDSMGHFCG 469

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQIN 209
           D+++  L+++L  V      V R+GG+EF    L + E ++ ++ + +  I+   N    
Sbjct: 470 DQLLTKLAERLQDVLHLRAHVARIGGDEF-VIILPNIESDSQLI-DTIEDILCLFNRPFE 527

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +S   S+ I+ S G+A      +   T++  AD A+Y+AKK+GRN    +S
Sbjct: 528 VSKNESLRISTSVGVARYPQDGQDSETLLKNADTAMYLAKKNGRNGYAFYS 578


>gi|262173449|ref|ZP_06041126.1| hypothetical protein VII_000539 [Vibrio mimicus MB-451]
 gi|261890807|gb|EEY36794.1| hypothetical protein VII_000539 [Vibrio mimicus MB-451]
          Length = 314

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 19/174 (10%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +++  D LS L N   F   L          +E L++V  DID FK+ ND+FGH  GD
Sbjct: 135 LDKMAHTDSLSSLANRLKFDEQLNIEFKRSRRQSEPLTVVMIDIDEFKKFNDHFGHIAGD 194

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           + I  ++  L      P     R GGEEFA     + E+ A  + N+L   +E  Q+ I+
Sbjct: 195 ECIRKIAYTLRSTTKRPADLAARYGGEEFALILPSTEEEGAKSMVNELINAVE--QLEIA 252

Query: 212 SGPSIH---ITISAG----IAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256
             P      +T+S G      E+   E +    +   AD ALY +K++GRN+  
Sbjct: 253 HSPEAMNPCVTVSVGYTVLYPEQVDFEQLKAVDVAQTADNALYTSKRNGRNQAT 306


>gi|254506358|ref|ZP_05118501.1| intracellular signaling protein (pas,gaf,ggdef domains) [Vibrio
           parahaemolyticus 16]
 gi|219550838|gb|EED27820.1| intracellular signaling protein (pas,gaf,ggdef domains) [Vibrio
           parahaemolyticus 16]
          Length = 353

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 15/168 (8%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N  +        I  +     K ++   DID+FK +NDN GH +GD V+  ++
Sbjct: 185 DTLTGVANRRSLFKTVHLDIERMKRAGGKGTLAIVDIDHFKLVNDNHGHQIGDDVLKKVA 244

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-----IIENSQINISSGP 214
             +        F+ R GGEEF       + +E   +   +R      +++   I +S G 
Sbjct: 245 TAIQAQLVESDFIARFGGEEFVVWLPERALEERRSIIEKVRTCVNSILVDGQPITVSVG- 303

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV--CFSD 260
           +     S+ + ++C+K  +  II+ AD  LY AK +GRN  V  C+S+
Sbjct: 304 ACEFDFSSLVNQQCNKATLDEIIHIADDNLYRAKDAGRNTTVRSCWSE 351


>gi|170749422|ref|YP_001755682.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
 gi|170655944|gb|ACB24999.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
          Length = 777

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 22/181 (12%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFK 140
           GS + E   S  R+S L+  D L+ L N   F     +  E+L+      ++  D+D FK
Sbjct: 330 GSDVTEKRRSEERLSYLALHDSLTDLPNRVLFHQLQEAARERLAQGDRFAVLALDLDEFK 389

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND FGH  GDK++  ++++L     + + + RL G+EFA  A G S       A DL 
Sbjct: 390 SVNDTFGHAAGDKLLKSVAERLRSFEASDVQLARLAGDEFAVLATGRS-------ARDLH 442

Query: 201 KI--IENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            I  + N  +   + P       + +++S GIA    ++    I+ RAD ALY  K  GR
Sbjct: 443 AIEALANGIVEALASPFTIDGIRLTVSVSIGIAI-APQDGCQEIMRRADLALYRMKSEGR 501

Query: 253 N 253
           N
Sbjct: 502 N 502


>gi|118593589|ref|ZP_01550966.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Stappia
           aggregata IAM 12614]
 gi|118433807|gb|EAV40467.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Stappia
           aggregata IAM 12614]
          Length = 722

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 100/190 (52%), Gaps = 28/190 (14%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI +L+ +D ++ L N  +F       + +      ++S++F D+D FK++ND++GH  G
Sbjct: 258 RIHELAYLDPVTRLPNRESFRLHFNSNMQTADGTPVRMSVLFIDLDRFKRVNDSYGHDHG 317

Query: 152 DKVIAFLSDQLVVVFGT-----------PMFVGRLGGEEFAAAALGSSEQEAA---ILAN 197
           D ++  ++ +L  +  +           P  V RLGG+EFA      +E+  A    LA+
Sbjct: 318 DALLKEVASRLRRLLNSADRAGEAPPAFPPLVARLGGDEFAIVI--PAEKPMANVYTLAD 375

Query: 198 DLRKIIENS-QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
           +L + +E   +IN   G ++ +  S G++      E  + I+  AD A+Y AK++G NR 
Sbjct: 376 ELVQCVEQPLEIN---GLTMAVGASIGVSTYPDDGEDYTAILKNADIAMYAAKRTGGNRA 432

Query: 256 VCFSDIENNT 265
             F++IE ++
Sbjct: 433 CFFNEIERDS 442


>gi|116691653|ref|YP_837186.1| RNase II stability modulator [Burkholderia cenocepacia HI2424]
 gi|116649653|gb|ABK10293.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia
           HI2424]
          Length = 667

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 17/186 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDID 137
           SG  + E   +  R+++L+  D L+GL N        H+A      +    + I+F D+D
Sbjct: 218 SGIDITEERNAQQRLTELANTDVLTGLPNRHAISERIHAAIAEEDANTRGHVGILFLDLD 277

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE----FAAAALGSSEQEAA 193
            FK++ND++GH  GD+++  +S  +     +   + RLGG+E    F  A     E  A 
Sbjct: 278 NFKRVNDHYGHITGDRLLQDVSAIISGCLPSGATLARLGGDEFLVLFEHATRPLLEATAQ 337

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           I+   LR  I    + + +  SI I +        H + + T+I  AD A+YVAK+ G++
Sbjct: 338 IILERLRTPIHLGLMEVYTSCSIGIAMHP-----QHGDSLETLIRSADTAMYVAKEEGKH 392

Query: 254 RVVCFS 259
               FS
Sbjct: 393 TYRVFS 398


>gi|313682449|ref|YP_004060187.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313155309|gb|ADR33987.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 250

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 95/193 (49%), Gaps = 23/193 (11%)

Query: 90  LKELFISYN-----RISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDID 137
           L E+ + Y+        +LS  D L+ L N   F   L      +  EK  LS +  DID
Sbjct: 57  LGEVLVRYDITEKKNFEKLSITDSLTELYNRRYFNDILTREIYRATREKSTLSFIILDID 116

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           YFK+ ND +GH  GDK +  ++  +   +     F  RLGGEEF     G +++++   A
Sbjct: 117 YFKKYNDTYGHYAGDKALTIVASTIKNSLHRGGDFAFRLGGEEFGIIFSGLNKEQSLEFA 176

Query: 197 NDLRKIIENSQI-NISSGPSIHITISAG------IAERCHKEPISTIIYRADQALYVAKK 249
             ++  IE+  I + +S  S HITIS G      + E   +    T+   AD ALY AK+
Sbjct: 177 EQIKANIEDLNIPHSNSAVSSHITISLGLVVIDFVNEYVDENGFYTM---ADSALYRAKE 233

Query: 250 SGRNRVVCFSDIE 262
           +GRN+V+   + E
Sbjct: 234 TGRNKVIMHENEE 246


>gi|296132516|ref|YP_003639763.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Thermincola sp. JR]
 gi|296031094|gb|ADG81862.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Thermincola potens JR]
          Length = 1349

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/131 (35%), Positives = 75/131 (57%), Gaps = 6/131 (4%)

Query: 126  NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            NE L+++F D+D FK +ND  GH +GD+++  ++ +L +       + RLGG+EF     
Sbjct: 950  NEMLAVMFLDLDRFKLVNDMLGHSIGDRLLQEVAKKLSICLRKGDTIARLGGDEFTLLLP 1009

Query: 186  G-SSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIA-ERCHKEPISTIIYRADQ 242
               SE+EAA +A   +KI++  Q  ++ SG   +IT S G+A      E    ++  AD 
Sbjct: 1010 QIKSEKEAAKIA---QKILKAFQKPVTLSGHEFYITASIGVALYPSDGEKAEILMKNADT 1066

Query: 243  ALYVAKKSGRN 253
            A+Y AK+ GRN
Sbjct: 1067 AMYRAKEQGRN 1077


>gi|260775416|ref|ZP_05884313.1| hypothetical protein VIC_000790 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608597|gb|EEX34762.1| hypothetical protein VIC_000790 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 648

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 86/171 (50%), Gaps = 7/171 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS--YNE-KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           N+  + + ID L+GL N   F   L    +NE  L +++ DID FK IND+ GH +GDKV
Sbjct: 216 NKPLEDAHIDSLTGLYNRFGFTKRLEQFIHNETPLLLLYLDIDNFKNINDSLGHHIGDKV 275

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSG 213
           I  +S +L  +      VG LGG+EF        + + A ILA  +  +I N   ++   
Sbjct: 276 IKEVSSRLKRLLPQHAVVGHLGGDEFGLILPEPENNRMAEILAERIISLI-NQPFDLHHF 334

Query: 214 PSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            S  +  S G +           ++  AD A+Y AK  GRNR++ F+D  N
Sbjct: 335 -SKRLACSIGSVTYPGDGNDARILLQNADTAMYEAKDRGRNRLIKFNDQMN 384


>gi|260596361|ref|YP_003208932.1| hypothetical protein CTU_05690 [Cronobacter turicensis z3032]
 gi|260215538|emb|CBA27722.1| hypothetical protein CTU_05690 [Cronobacter turicensis z3032]
          Length = 327

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 13/159 (8%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++  D L+G+ N   F        S+L    E  SI++FD+D FK IND +GH  GD+V+
Sbjct: 171 MAMTDSLTGIPNRRGFYRSGEKRFSALQENTEPFSILYFDLDRFKPINDLWGHAEGDEVL 230

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              + QL    G     GRLGG+EF  A L + E++     N+LR  ++    N  +G  
Sbjct: 231 KVFASQLRQHLGPKDIAGRLGGDEF--AVLLTRERDTQPFLNNLRASLDAH--NQRAGKP 286

Query: 216 IHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGR 252
            +I  S G+  R     + +  +I  +D  +Y  K+  R
Sbjct: 287 YNINYSYGMLHRDSGSYDSLLEMIKESDNVMYSEKRRKR 325


>gi|239835168|ref|ZP_04683495.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239821307|gb|EEQ92877.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 657

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 112/260 (43%), Gaps = 36/260 (13%)

Query: 24  PHTFMIYFSIFFSIFI--ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL 81
           P T +   ++ + + +  A    +  + L Y GL        +++  + LVI+ +  + L
Sbjct: 139 PMTALASTAVEYDVGLIDAAQAEVRQLHLIYTGLAAG-----LIICGVVLVILLLRHNKL 193

Query: 82  LGYISGSILK----------ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS- 130
           L    GS+ +          EL     R+   +  D L+GL N   F   L    E    
Sbjct: 194 LDRAHGSMQRLTSDLRQATGELQSQNFRLEHDAHHDALTGLPNRVLFRQDLEKRLEAAHA 253

Query: 131 ------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
                 I+  D+D FK +ND  GH VGD ++  ++ +L  + G    V RLGG+EFA  +
Sbjct: 254 GGQSAVILLLDLDGFKDVNDTLGHDVGDALLQAVARRLTKLGGRGDMVCRLGGDEFALLS 313

Query: 185 LGSSEQEAAILANDLRKIIEN----SQINISSGPSIHITISAGIAERCHKEPISTIIYR- 239
            G  E +A  LA+ L + I       ++ I  G  + + IS G       EP +  +++ 
Sbjct: 314 TGLQEDQALELADRLMEAISEPYHVGELEIKIGTCVGVAISQG-------EPDTEELFKH 366

Query: 240 ADQALYVAKKSGRNRVVCFS 259
           AD ALY AK  G      F 
Sbjct: 367 ADLALYEAKALGPGHASVFE 386


>gi|221065573|ref|ZP_03541678.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Comamonas testosteroni KF-1]
 gi|220710596|gb|EED65964.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Comamonas testosteroni KF-1]
          Length = 935

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 15/177 (8%)

Query: 102 QLSRI---DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           QL R+   D L+GL N           I         L++VF D+D FK++ND  GH VG
Sbjct: 382 QLERVAHYDLLTGLPNRLLLGDRLKQAIRQTRRRGMHLAVVFIDLDGFKKVNDQHGHAVG 441

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DK+++ LS ++  V      + RLGG+EF A  +   +   ++   D  ++IE +   + 
Sbjct: 442 DKLLSVLSRRMTQVLREDDTLARLGGDEFVAILVDLPDISVSVPILD--RLIEVAVQPVP 499

Query: 212 SGPSI-HITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            G ++  ++ S G++     E I    ++ +ADQA+Y AK++G+NR   F   ++ T
Sbjct: 500 IGDALCEVSASIGVSYYPQGEDIDADQLLRQADQAMYRAKQAGKNRYHVFDTEKDRT 556


>gi|162149603|ref|YP_001604064.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161788180|emb|CAP57785.1| putative signalling protein, GGDEF family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 541

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 7/172 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           L+E       +   +  D L+ LLN  A          +   +E+  ++  DID+FK IN
Sbjct: 356 LRERAAQTQALKHQAETDELTQLLNRRALQILAKPRLEISEADERAFLILLDIDHFKSIN 415

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+V+  ++  L         V R GGEEFA      ++  A  +A+ LR+ +
Sbjct: 416 DRHGHTEGDRVLVAVAAALREQVRPDDLVARFGGEEFAILIRAHTQMTALSMAHRLRRRL 475

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + ++  +    I +T S G+A          ++ +AD ALY AK++GRN V
Sbjct: 476 GSLKVVSAQNVRIPVTASFGVAA-GDNLTWRQLVAKADVALYAAKRAGRNTV 526


>gi|24215228|ref|NP_712709.1| GGDEF domain receiver component of a two component response
           regulator [Leptospira interrogans serovar Lai str.
           56601]
 gi|45657320|ref|YP_001406.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24196312|gb|AAN49727.1| GGDEF domain receiver component of a two component response
           regulator [Leptospira interrogans serovar Lai str.
           56601]
 gi|45600558|gb|AAS70043.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 330

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 87/162 (53%), Gaps = 11/162 (6%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +SR D L+GL N   F   L +  ++       ++++  DID+FK  ND +GH  GD+ +
Sbjct: 160 ISRTDSLTGLYNRRYFDEILSTEWKRCWRTEASIALIMLDIDHFKLYNDTYGHQGGDQCL 219

Query: 156 AFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
             ++  +         V  R GGEEFA     ++E  A +++ ++ + IEN  I  S+  
Sbjct: 220 KQVASAIRDCARRAGDVAARYGGEEFAIILPETTESNAVVVSRNILENIENLGIPHSASK 279

Query: 215 SIHI-TISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
           +  I T+S G+A      +  I+ +I RAD+ALY+AK+ GRN
Sbjct: 280 TNSIVTVSIGMATLSPSPENSITELIERADKALYLAKEEGRN 321


>gi|294650374|ref|ZP_06727741.1| two component response regulator [Acinetobacter haemolyticus ATCC
           19194]
 gi|292823787|gb|EFF82623.1| two component response regulator [Acinetobacter haemolyticus ATCC
           19194]
          Length = 409

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 85/176 (48%), Gaps = 15/176 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           EL     ++S LS+ D L+GL N       L +  ++       ++I+  DID+FK  ND
Sbjct: 222 ELMRQAQQLSILSQQDALTGLANRRYLDEVLENEWKRAMRHEMPITIMMIDIDFFKLYND 281

Query: 145 NFGHPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
             GH  GD   + IA L   +    G      R GGEEF      + + +A I    L +
Sbjct: 282 TLGHIQGDQCLRRIAILLGSITSRSGD--LAARYGGEEFLLLFSMTDQDQALIQVKRLME 339

Query: 202 IIENSQIN-ISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254
           ++ N  IN   S  S H+TIS  +A       + +S  I RAD ALY+AK +GRN+
Sbjct: 340 LVSNIGINHPKSQISKHVTISVDVATMVPSLGDSLSEFISRADHALYIAKSNGRNQ 395


>gi|261252184|ref|ZP_05944757.1| GGDEF domain protein [Vibrio orientalis CIP 102891]
 gi|260935575|gb|EEX91564.1| GGDEF domain protein [Vibrio orientalis CIP 102891]
          Length = 339

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 12/200 (6%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112
           +G    Y     L E+  L ++ +  SL       ++  E +   +++   +R D L+G 
Sbjct: 135 MGTFAIYSAAPSLPESHELEVLEMLASLY------AVAWEKYQLEDQLHYHARYDSLTGC 188

Query: 113 LNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
           LN  A +      L +  + ++  F DID FKQIND  GH VGDKV+A + +     F  
Sbjct: 189 LNRRALLQQANDCLNTELKYIACFFADIDKFKQINDRNGHEVGDKVLAAVGEVFNQTFEI 248

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
               GR GG+EF A +  +     + LA +  + +   +I+   G +I++++   + E  
Sbjct: 249 SSLGGRYGGDEFVAFSWSNDPDTFSQLAVEFNQRL--GEISPVDGVTIYVSVGMAVCEIT 306

Query: 229 HKEPISTIIYRADQALYVAK 248
               +  +I RAD A+Y  K
Sbjct: 307 RMTSLQRLIKRADHAMYKVK 326


>gi|254262168|emb|CAZ90497.1| hypothetical protein [Enterobacter turicensis]
          Length = 352

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 73/128 (57%), Gaps = 5/128 (3%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           ++++ DID FK +ND FGH VGD ++  +SD L +V        RLGG+EF      ++ 
Sbjct: 225 TLMYIDIDDFKSVNDRFGHKVGDTLLIAVSDILRIVTRQTDTPARLGGDEFVVLLPETTL 284

Query: 190 QEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247
           ++A  +    R+I++  + + +S   ++  T+S GIA   H    ++  +  AD ALY A
Sbjct: 285 EQAYDVG---RRIMDAVTLLRLSPDRALDFTLSIGIASATHTMADVTDWLKAADDALYQA 341

Query: 248 KKSGRNRV 255
           K+ G+NR+
Sbjct: 342 KRQGKNRI 349


>gi|221210016|ref|ZP_03582997.1| diguanylate cyclase [Burkholderia multivorans CGD1]
 gi|221170704|gb|EEE03170.1| diguanylate cyclase [Burkholderia multivorans CGD1]
          Length = 493

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 11/169 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNF 146
           ++   I  L+R D L+GL N     + L           +  +++++ D+D FK IND F
Sbjct: 310 LTEQHIRHLARHDALTGLPNRHELHAELERMLSRPPRRPDTAVAVMYLDLDGFKAINDRF 369

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+++  ++++L           R+GG+EF  A   ++    + +A  L   I ++
Sbjct: 370 GHQAGDELLTQVAERLGRTLRDGALAARIGGDEFVVAVDDTTMDACSRVAAQLIAQI-SA 428

Query: 207 QINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
              +S G ++   IS GIA +  H  P   +I +AD ALY AK +G+ R
Sbjct: 429 PYTLSIGETVRFGISIGIALDDGHGTP-DELIRQADSALYDAKSAGKGR 476


>gi|149194220|ref|ZP_01871317.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Caminibacter mediatlanticus TB-2]
 gi|149135395|gb|EDM23874.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Caminibacter mediatlanticus TB-2]
          Length = 651

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 19/181 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           +L ++ N + + +  D L+ L N       +  L + NEK  +VF D+D FK+IND +GH
Sbjct: 220 KLEMTINDLYKTTLTDYLTRLGNRKFLEKSVKELINKNEKFCMVFLDLDNFKEINDYYGH 279

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD++I  +S+ L         + R+GG+EF     G  ++    + N L K++  +Q+
Sbjct: 280 SVGDELIIKISEILKEFIKEDEIISRVGGDEFVLILKGCDDK--TYINNRLNKLL--NQL 335

Query: 209 N---ISSGPSIHITISAGIAERCHKEPISTIIY-----RADQALYVAKKSGRNRVVCFSD 260
           N   +     I  ++S G++      P + IIY     ++D ALY +K  G+N V  F D
Sbjct: 336 NRRWVLRDYEIKTSVSMGVSIY----PDNAIIYEELLKKSDIALYESKSRGKNSVTFFDD 391

Query: 261 I 261
           +
Sbjct: 392 M 392


>gi|126664450|ref|ZP_01735434.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Marinobacter sp. ELB17]
 gi|126630776|gb|EBA01390.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Marinobacter sp. ELB17]
          Length = 564

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 4/158 (2%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +++++ L     L+  L  + F +   SY   +SI++ DID FKQ+ND+FGH  GD+V+ 
Sbjct: 141 FDKVTDLPNRLLLTDRLQQAMFQAD--SYQGIVSILYMDIDRFKQVNDSFGHAGGDEVLR 198

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +++++    G    V R GG+EF     G S  +AA +A+ + + + +S I +     +
Sbjct: 199 RVAERIGACVGKADTVSRWGGDEFIVLLPGQSAGDAAGVASAISRAL-HSLIVLGGSREL 257

Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
            ++ S GIAE  HK   I  +I  A  A+   K+ G N
Sbjct: 258 FVSCSIGIAEYPHKGGDIDALINSARSAMSAIKEQGGN 295


>gi|86742420|ref|YP_482820.1| diguanylate cyclase/phosphodiesterase [Frankia sp. CcI3]
 gi|86569282|gb|ABD13091.1| diguanylate cyclase/phosphodiesterase [Frankia sp. CcI3]
          Length = 793

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 13/175 (7%)

Query: 94  FISYNRISQ---LSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQIND 144
           FI   ++++   L+R D L+GL N   FI  L    ++       +++  D+D FK+IND
Sbjct: 312 FIEVQQLAESKVLARTDELTGLANRRGFIERLTKAEQRATGVGTFALLLLDLDRFKEIND 371

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH VGD ++A +  ++           RLGG+EF A  L  ++ EAA    D    + 
Sbjct: 372 SLGHQVGDALLAQVGTRISDALRPGDLHARLGGDEF-AVLLEHADIEAAKRVADRVLAVL 430

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
               ++  G ++H+  S G A    H E    ++ RAD A+Y A KSGR  V  +
Sbjct: 431 GDPFDV-GGVTLHVGASIGAAVYPDHAEDAHILLQRADVAMYAA-KSGRTGVESY 483


>gi|89898937|ref|YP_521408.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
 gi|89343674|gb|ABD67877.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
          Length = 398

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 89/175 (50%), Gaps = 14/175 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           K L  +  R++Q + +D L+GL N   F  +L    ++       LS++  DID+FK  N
Sbjct: 199 KVLEANNQRLAQQTAMDGLTGLANRRRFDEALTVEWQRAARGRTPLSLLMVDIDHFKNYN 258

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DN+GH  GD+ +  +S  L   V      V R GGEEF     G+    A  +A     +
Sbjct: 259 DNYGHLAGDQCLRRVSSVLSRCVRRAGELVARYGGEEFVLLLPGADMAHACEIAQMCLDL 318

Query: 203 IENSQINISSGP-SIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGR 252
           ++   +  ++ P S+++T+S G+A    +    +P S ++  AD A+Y AK SGR
Sbjct: 319 MQQECVAHAASPTSVYVTLSIGVACALPDAMLDDPAS-LVNAADAAMYRAKSSGR 372


>gi|89097342|ref|ZP_01170232.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor [Bacillus sp. NRRL B-14911]
 gi|89088165|gb|EAR67276.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor [Bacillus sp. NRRL B-14911]
          Length = 1106

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 11/154 (7%)

Query: 107 DCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D ++GL N   F  +L     G   EK +I++ D+D FK IND  GHP+GD+V+   +D+
Sbjct: 534 DYMTGLPNRRLFDQTLNGLFEGKNPEKFAIMYLDLDRFKHINDTLGHPIGDQVLKEAADR 593

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS-QINISSGPSIHIT 219
           +        F  R+GG+EFA  A    S ++A+ LA  +   I+   +I    G  + IT
Sbjct: 594 ITASIRKGDFASRMGGDEFAIIARNVESIEDASRLAAKITGTIQKPYEI---EGYELFIT 650

Query: 220 ISAGIAERCHKEPISTIIYR-ADQALYVAKKSGR 252
            S GI+   +       + R AD ALY AK+ G+
Sbjct: 651 ASIGISLYPNNGSTPEELARNADAALYHAKQMGK 684


>gi|320449799|ref|YP_004201895.1| ggdef domain-containing protein [Thermus scotoductus SA-01]
 gi|320149968|gb|ADW21346.1| ggdef domain protein [Thermus scotoductus SA-01]
          Length = 311

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 81/154 (52%), Gaps = 19/154 (12%)

Query: 109 LSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GL N  A   ++     ++       ++V  D+D FKQ+ND +GH  GD+++  ++  
Sbjct: 166 LTGLPNRRALEMAMEREAARVERGEAPFALVLLDLDDFKQVNDTYGHQEGDRLLKEVAQY 225

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           LV        VGR GGEEFA     +  +EA  +A  +R+ ++           + IT S
Sbjct: 226 LVAHVRQGDLVGRWGGEEFALLLPRTRGEEAMQVAERIREGLKR----------LGITGS 275

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G+A   ++  +  +  +AD+ALY+AK+ G++RV
Sbjct: 276 LGVA--VYEGDLKDLFQKADRALYLAKEGGKDRV 307


>gi|291612949|ref|YP_003523106.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291583061|gb|ADE10719.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 751

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 22/181 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG---SYNEK----LSIVFFDIDYFKQINDNFGHPV 150
            ++  ++  D L+G+ N       L    +++++    L++ + D+D FK +ND  GH  
Sbjct: 314 RQLEHIAHYDALTGIPNRVLLADRLQQALAHSKREGTILAVCYLDLDGFKLVNDTMGHEA 373

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG--SSEQEAAILANDLRKI-----I 203
           GDKV+  ++ ++         V RLGG+EFA   LG  + E+ +A L   L +I     I
Sbjct: 374 GDKVLIEVTQRIKKSIRGDDTVARLGGDEFAVLLLGLHAPEECSASLNRLLEEISQPIEI 433

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +N    +S+  SI ++I  G           T++  ADQA+Y AK+SG+NR   + D EN
Sbjct: 434 KNRLFEVSA--SIGVSIYPG-----DDHDADTLLRHADQAMYTAKQSGKNRYYLY-DTEN 485

Query: 264 N 264
           +
Sbjct: 486 D 486


>gi|218282657|ref|ZP_03488872.1| hypothetical protein EUBIFOR_01458 [Eubacterium biforme DSM 3989]
 gi|218216420|gb|EEC89958.1| hypothetical protein EUBIFOR_01458 [Eubacterium biforme DSM 3989]
          Length = 479

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 79/166 (47%), Gaps = 8/166 (4%)

Query: 102 QLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            LS ID L+ + N       I      +E    +  D+D FK +NDN+GH VGDKV+  L
Sbjct: 318 HLSEIDPLTSVFNKETTQKLIDQKLKNHEHFCFLILDVDDFKSVNDNYGHAVGDKVLKNL 377

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           SD     F     VGR+GG+EF          E+ I +  L+K+   + + I       +
Sbjct: 378 SDLFKNHFRQTDIVGRIGGDEFIILIEDEHIAESRIQSL-LKKV---NALKIEELQDFKL 433

Query: 219 TISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDIEN 263
           +IS G+A           +YR AD ALY  K++G+N    + + EN
Sbjct: 434 SISVGMAFAPSNGTTFMELYRHADHALYQTKRTGKNDYKIYKNDEN 479


>gi|239617058|ref|YP_002940380.1| diguanylate cyclase with PAS/PAC sensor [Kosmotoga olearia TBF
           19.5.1]
 gi|239505889|gb|ACR79376.1| diguanylate cyclase with PAS/PAC sensor [Kosmotoga olearia TBF
           19.5.1]
          Length = 607

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 98/200 (49%), Gaps = 17/200 (8%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------- 125
           I+S  ++++L  I   + +EL     ++  +S  D L+ L N   F      Y       
Sbjct: 406 ILSQQVAVILKRIK--LEEELRRQKKQLKFMSEHDPLTDLPNRRLFAERAKQYIALAKRR 463

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              LSI++ D+++FK++ND+FGH VGD V+  ++ +          V RLGG+EF  A  
Sbjct: 464 KSPLSILYLDLNHFKEVNDSFGHDVGDLVLKKITKRFKSCLREGDLVARLGGDEFVFALP 523

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQAL 244
            +  + AA +A  + ++IE   INI  G S+ I+ S G+A      E I  ++  AD  +
Sbjct: 524 DTDAENAAKVAKRIIEVIEKP-INI-KGKSVKISGSIGVAVFPDDGENIDQLLKHADMNM 581

Query: 245 YVAKKSGRNRVVCFSDIENN 264
           Y  K     R+ C +  E N
Sbjct: 582 YRDK-----RLKCNNGEERN 596


>gi|170745256|ref|YP_001766713.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658857|gb|ACB27911.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 776

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 17/167 (10%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVG 151
           RI Q++  D L+GLLN S+F + +      S   K   ++   D+D+FK IND  GHP G
Sbjct: 342 RIQQMASYDDLTGLLNRSSFKAKVSEALKASARSKGDFAVHLLDLDHFKVINDTLGHPAG 401

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEF-----AAAALGSSEQEAAILANDLRKIIENS 206
           D+++  ++D+L  +      V RLGG+EF     +  +   +E  A  +  +L +  +  
Sbjct: 402 DRLLQMVADRLRGIGALSGSVARLGGDEFVIVQQSVTSPAVAEDLARRVLQELERPFDID 461

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             +++ G SI I I+       H      ++  AD ALY  K +GR+
Sbjct: 462 GTHVTVGASIGIAIAP-----FHANDEDRLLKCADIALYAIKGAGRS 503


>gi|90021368|ref|YP_527195.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89950968|gb|ABD80983.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 325

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N  A  +           +   LS++  D+D+FK++ND +GH  GDK++  + 
Sbjct: 146 DPLTGIGNRQAMDNCFAREIKLSLRHQTPLSLMLIDVDFFKKLNDTYGHRAGDKMLKHIV 205

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR--KIIENSQINISSGPSIH 217
             +         + R GGEEF      +  + A + A  +R    I   +I+   G ++ 
Sbjct: 206 TNIKNSLRETDQIFRFGGEEFVVLLHNTDAENARLTAERIRIHSAITPMEID---GENVA 262

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            TIS G+      + + +   RAD ALY AKK GRN+VV  S
Sbjct: 263 STISLGVTTLIDTDNVESFFERADCALYQAKKEGRNKVVVES 304


>gi|325926620|ref|ZP_08187934.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
 gi|325542972|gb|EGD14421.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
          Length = 983

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 1/122 (0%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+IND++GH VGD V++ + + L        F  R GGEEF  AA G    +A  
Sbjct: 861 DIDHFKRINDDYGHEVGDAVLSAIGEVLSEQDQARCFAARHGGEEFLLAATGLDAVQARA 920

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           L   +R+ + + +++ + G ++  T S G+A          ++  AD  LY AK+ GR+R
Sbjct: 921 LFERMRQRLADIEVD-AQGMTVRCTASMGMAMSEEAPSRRELLALADHRLYEAKRQGRDR 979

Query: 255 VV 256
           ++
Sbjct: 980 LI 981


>gi|239830953|ref|ZP_04679282.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239823220|gb|EEQ94788.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 392

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 9/168 (5%)

Query: 96  SYNRISQLSR---IDCLSGLLNHSAF---ISSLGSYNEKLS--IVFFDIDYFKQINDNFG 147
            ++RI +LS     D L+GLLN        ++L       S  +   DIDYFK +ND++G
Sbjct: 215 GHDRIGELSHERDSDPLTGLLNRRGLEMRYNALSHTKRGASGWVAVCDIDYFKALNDDYG 274

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+   +  L  + G    + R GGEEF              L   +R+ IE  +
Sbjct: 275 HAAGDAVLQEFAGILRKLLGERSLIARTGGEEFVICLHDMQADNVLELMEGVRRNIETHR 334

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               S  +  +T S G      +  +   + +AD+ LY AKK GRNR 
Sbjct: 335 FQRLSDET-SVTCSIGCVRLQEQGDLWQAVDKADKVLYAAKKDGRNRT 381


>gi|254459177|ref|ZP_05072599.1| sensory box/ggdef domain/eal domain protein [Campylobacterales
           bacterium GD 1]
 gi|207084070|gb|EDZ61360.1| sensory box/ggdef domain/eal domain protein [Campylobacterales
           bacterium GD 1]
          Length = 760

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 17/174 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I Q +  D L+GL N           I+ L  +N   +I+F DID FK IND+ GH +G
Sbjct: 325 KIRQQAFYDHLTGLANRLTLNDRLEQQIARLARHNRFGAILFIDIDNFKTINDSLGHHIG 384

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL------ANDLRKIIEN 205
           D ++   + +   +      V RLGG+EF       S+ +   L      A  L K+++ 
Sbjct: 385 DTLLKTFAQRASSIMRKEDTVARLGGDEFVILLSDLSDNKNHALEYSHNVARKLHKLMKE 444

Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             I +    S+++T+S GI      +E I+ I+  AD A+Y AK+ GRN   CF
Sbjct: 445 P-IEVEEH-SLYVTLSIGITTISEEEEDINVILKHADIAMYKAKQQGRN-TTCF 495


>gi|148255842|ref|YP_001240427.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
 gi|146408015|gb|ABQ36521.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
          Length = 907

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 18/166 (10%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           RI+ L+  D L+ L N + F   L       S  ++L++ + DID FK +ND+ GH +GD
Sbjct: 464 RITHLAHYDALTELPNRTLFHERLKQELIHVSAGQRLALHYIDIDEFKGVNDSLGHLIGD 523

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +++  ++  L    G   FV RLGG+EFA    G   +       D+ ++IE+    I +
Sbjct: 524 ELLKSVAASLSTCVGEAGFVARLGGDEFAVVQTGIRNR------GDVEQLIEDILAAIRA 577

Query: 213 -----GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGR 252
                G  +    S G+A    H   +  I+  AD A+Y AK +GR
Sbjct: 578 PRDCLGHQLTADASIGVALIPEHGTELDQIMKNADLAMYAAKGAGR 623


>gi|13471591|ref|NP_103157.1| hypothetical protein mlr1609 [Mesorhizobium loti MAFF303099]
 gi|14022333|dbj|BAB48943.1| mlr1609 [Mesorhizobium loti MAFF303099]
          Length = 447

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 86/173 (49%), Gaps = 23/173 (13%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHP 149
           Y  + + +  D L+GLL+   F +   +  E        LS++  D+D+FK IND FGH 
Sbjct: 265 YEALVEHAGRDGLTGLLHRGRFDADGEAAVEVSLRTARPLSLLIIDVDHFKSINDRFGHA 324

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDLRKIIENSQI 208
            GDKV+  ++  L  V      V R+GGEEF  A L S     A L    +R  ++ S +
Sbjct: 325 EGDKVLKGVASLLSEVASAGDQVFRIGGEEF--AILSSRPHPVARLFGESIRHAVKASAV 382

Query: 209 NISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                    +T+SAG++      RC    ++ +   ADQ LY AK +GR+RVV
Sbjct: 383 ----ASRFELTVSAGVSTVSETTRC----LADLFALADQRLYKAKSTGRDRVV 427


>gi|332142445|ref|YP_004428183.1| hypothetical FOG: GGDEF domain protein [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327552467|gb|AEA99185.1| hypothetical FOG: GGDEF domain protein [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 712

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 86/186 (46%), Gaps = 23/186 (12%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-----------------GSYNEKLSIVF 133
           +EL  +Y  + ++S  D L+GL N     S L                     + L  + 
Sbjct: 477 EELQAAYKTLEEVSLRDPLTGLYNRHCLESQLPGEIRRSQFSARQSPTTDKAKQDLLCLL 536

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK++ND++GH  GDKV++  +  L  VF     + R GGEEF      S+ +E  
Sbjct: 537 IDIDHFKRVNDDYGHIAGDKVLSSFAQVLKNVFRQTDLIIRWGGEEFLVVCRQSNREELP 596

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRA-----DQALYVA 247
            LA   R+++ ++  +I     I IT S G +     K+  S + +       D ALY +
Sbjct: 597 ELAERCREMVASTPFDIGLDKPIKITCSIGFSLLSPDKKDNSDVAWERTFAVIDYALYAS 656

Query: 248 KKSGRN 253
           K SGRN
Sbjct: 657 KLSGRN 662


>gi|328470673|gb|EGF41584.1| hypothetical protein VP10329_07732 [Vibrio parahaemolyticus 10329]
          Length = 652

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 16/171 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D L+GL N S F       +   G   ++ ++++ D+D FK+IND +GH  G
Sbjct: 479 RLEYLAHHDALTGLANRSKFHLELEDLVQRSGYQRDEFAVLYLDLDGFKEINDTYGHDAG 538

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK----IIENSQ 207
           D+V+  ++D+L         + RL G+EF      ++++    +A  L +     IE   
Sbjct: 539 DEVLKRVADRLTSATRHSDLIARLSGDEFVMLVNPANQKVVTRIAEQLLENICAPIEYKG 598

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +  G SI + +  G+ ER      + I+  AD A+Y AKK+G+ + +  
Sbjct: 599 NELKVGVSIGVKL-VGVNER----DATRILKSADTAMYQAKKAGKGQAILM 644


>gi|254505892|ref|ZP_05118037.1| hypothetical protein VPMS16_3044 [Vibrio parahaemolyticus 16]
 gi|219551115|gb|EED28095.1| hypothetical protein VPMS16_3044 [Vibrio parahaemolyticus 16]
          Length = 588

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 70/133 (52%), Gaps = 5/133 (3%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAA 183
            E + +   DID+FK+IND  GH  GD VI   ++ +   F  P  + + R GGEEF   
Sbjct: 453 KEGIYLAILDIDHFKRINDVHGHQCGDHVILHTAELMKKCFPKPGAISLARYGGEEFCVL 512

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              + E +A       R+++E ++++      +  T+S GI     ++   T I RAD+A
Sbjct: 513 FYANDENDAYEQCELFRQVVEQTELSYEE-IEVRYTVSIGITSA--QDSQHTTIGRADKA 569

Query: 244 LYVAKKSGRNRVV 256
           LY AK  GRN+VV
Sbjct: 570 LYQAKGLGRNQVV 582


>gi|213027880|ref|ZP_03342327.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 129

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 70/129 (54%), Gaps = 17/129 (13%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK IND +GH  GD+ I  L+ QL +       +GR GG+EFA    G+   ++AI
Sbjct: 6   DIDHFKSINDTWGHDAGDEAIIALTRQLQITLRGSDIIGRFGGDEFAVIMCGTPA-DSAI 64

Query: 195 LANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--YR-----ADQALYV 246
            A  + ++ E  + + +   P + + IS G+A      P++  I  YR     AD ALY 
Sbjct: 65  TA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGHYREWLKSADMALYK 116

Query: 247 AKKSGRNRV 255
           AK +GRNR 
Sbjct: 117 AKNAGRNRT 125


>gi|157375366|ref|YP_001473966.1| GGDEF domain-containing protein [Shewanella sediminis HAW-EB3]
 gi|157317740|gb|ABV36838.1| GGDEF domain protein [Shewanella sediminis HAW-EB3]
          Length = 467

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 10/163 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG----SYNEK--LSIVFFDIDYFKQINDNFGHPVGD 152
            +  L+ ID L+G+ N   FI SL     + NE+  L+++ FDID FK INDNFGH VGD
Sbjct: 300 ELQHLASIDSLTGIYNRRYFIRSLKDACRTMNEEASLTLLLFDIDKFKTINDNFGHVVGD 359

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            +I  ++  +     +     R+GGEEF       + ++A  L+  ++  +  +Q     
Sbjct: 360 YIIKQIAQVVAEEIPSDAVFARIGGEEFCIYLHNLTVKQANTLSKKVQACVSAAQFE-KD 418

Query: 213 GPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRN 253
               H+++S G +  C    +    +I +AD  +Y+AK  GR+
Sbjct: 419 QVCHHVSVSLG-SVYCTTAMVDHQYLINQADHLMYIAKSLGRD 460


>gi|138894571|ref|YP_001125024.1| response regulator [Geobacillus thermodenitrificans NG80-2]
 gi|196247821|ref|ZP_03146523.1| response regulator receiver modulated diguanylate cyclase
           [Geobacillus sp. G11MC16]
 gi|134266084|gb|ABO66279.1| Response regulator [Geobacillus thermodenitrificans NG80-2]
 gi|196212605|gb|EDY07362.1| response regulator receiver modulated diguanylate cyclase
           [Geobacillus sp. G11MC16]
          Length = 393

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 87/180 (48%), Gaps = 18/180 (10%)

Query: 92  ELFISYNRISQLSR-------IDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDID 137
           EL+I  +R+ +  R       ID L+G+ N            S L  +     +   D+D
Sbjct: 213 ELYIRVHRLVEKKRKIDKLVLIDELTGVYNRKYLPRVYVRLRSDLERFGTPSCLALLDLD 272

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FKQ+ND FGH VGD V+  L+  L+        V R GGEEF      +S  EA  +  
Sbjct: 273 HFKQVNDRFGHLVGDAVLKKLAAFLLQHTRGMDTVIRFGGEEFIVWLAKTSTCEAHRVLG 332

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255
            L++   + +I  ++G  +  T SAG  E C    E +   +  AD+ALY AKKSG +RV
Sbjct: 333 RLQRQFASEEIE-AAGVRLSCTFSAGFVE-CSDPNESLDHWLKLADKALYAAKKSGGSRV 390


>gi|118579769|ref|YP_901019.1| response regulator receiver modulated diguanylate cyclase
           [Pelobacter propionicus DSM 2379]
 gi|118502479|gb|ABK98961.1| response regulator receiver modulated diguanylate cyclase
           [Pelobacter propionicus DSM 2379]
          Length = 319

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 20/173 (11%)

Query: 106 IDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+G+ N   F  SL +       +   L+++  DID+FK+ ND++GH  GD  +  +
Sbjct: 152 IDGLTGVANRRRFDESLEAEWRQCRRHRAPLALLMIDIDHFKKYNDSYGHQEGDVCLRKI 211

Query: 159 SDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI 216
           +  L    G P   V R GGEEFA    G   + A   A  +   +    I ++SS  + 
Sbjct: 212 ATLLREELGRPHDLVARYGGEEFACLLPGVDMEGAMYKAQSILTALHRQAIPHVSSETAP 271

Query: 217 HITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            +TIS G+A      E  H + ++T    AD  LY AK+ GRNR +C  ++ +
Sbjct: 272 FVTISLGVAVTSPGPEPRHGQLVAT----ADTQLYKAKQQGRNR-ICGQEVTD 319


>gi|296117223|ref|ZP_06835816.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295976318|gb|EFG83103.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 572

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 16/189 (8%)

Query: 83  GYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVF 133
           GY++    + EL  +  R+S+L+  D L+ LLN   F ++L +          +  ++V 
Sbjct: 120 GYVASRFEITELMKTKERLSELAETDTLTALLNRGGFNTALSAALGLSSKEPPQSRALVM 179

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA---AAALGSSEQ 190
           FD+D FKQIND  GH  GD V+  ++ +LV +      + RLGG+EFA      L S   
Sbjct: 180 FDLDGFKQINDIHGHHAGDIVLRVVASRLVELTDPDDPISRLGGDEFAIVLNKTLRSVPL 239

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           E  +  + L+  +E   I+I +  ++ I+ S G      +E +  +   AD ALY AK++
Sbjct: 240 EKYM--DRLQAALERP-IDIET-VTVSISGSIGAVFLDARESVEDMQKNADMALYAAKRA 295

Query: 251 GRNRVVCFS 259
           G  +   F+
Sbjct: 296 GGKQAQMFT 304


>gi|294625650|ref|ZP_06704273.1| signal transduction protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600073|gb|EFF44187.1| signal transduction protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 326

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 10/140 (7%)

Query: 120 SSLGSYNEKLSIVFF--DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
           S + S  E    V F  D+D  KQIND FGH  GD+V+  L D      G   +VGR GG
Sbjct: 181 SVIASQREGWPFVLFVLDMDNLKQINDRFGHLAGDRVLVRLVDSAYGWLGAQDWVGRWGG 240

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           +EF    + +SE EA +  N    ++E    + +    +H++  + +   C +   +T +
Sbjct: 241 DEF-LIGIHASEDEATLKLNQWLSMLEREDADDA---PLHVSAGSAV---CEQGLDATEL 293

Query: 238 Y-RADQALYVAKKSGRNRVV 256
           Y RAD A+Y AK SG  R+V
Sbjct: 294 YRRADAAMYRAKFSGGRRLV 313


>gi|262404004|ref|ZP_06080559.1| GGDEF family protein [Vibrio sp. RC586]
 gi|262349036|gb|EEY98174.1| GGDEF family protein [Vibrio sp. RC586]
          Length = 443

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 13/165 (7%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+GLLN  AF   L          + KL+++FFD+D FK+IND  GH  GD V+
Sbjct: 269 LSERDSLTGLLNRRAFKQQLSQALVKAKRSDMKLALLFFDLDKFKEINDTKGHEAGDMVL 328

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++ +L        F GRLGG+EF    L   +  + + +   + + + ++  + +   
Sbjct: 329 QEIAQRLKGTIRESDFCGRLGGDEF-VVCLDILQDHSGVRSKSYQLLDKLTKPMLVNNEE 387

Query: 216 IHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + + +S GIA   ++  + P   ++  AD+A+YVAK      + C
Sbjct: 388 LTVGVSIGIALYPDQAVQMP--ELLRIADEAMYVAKHQSGGMIYC 430


>gi|88706235|ref|ZP_01103942.1| sensory box/GGDEF family protein [Congregibacter litoralis KT71]
 gi|88699629|gb|EAQ96741.1| sensory box/GGDEF family protein [Congregibacter litoralis KT71]
          Length = 654

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 16/175 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
           + I + +  D L+GL N       LG         N + +++F D+D+FK++ND+ GH  
Sbjct: 212 DTIERQALFDELTGLPNRRLLQDRLGQALARAKRNNTQAALMFLDLDFFKRVNDSLGHSA 271

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA---AAALGSSEQEAAIL---ANDLRKIIE 204
           GD+++  +  +L           RLGG+EF        G SE   +++      LR+ +E
Sbjct: 272 GDELLVEIGRRLSDFLREADTAARLGGDEFVLLLTDIEGGSEHVVSVVRRRGETLRQAVE 331

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            + INI  G  +HIT+S G++        +  ++  AD A+Y AK  GRN +  F
Sbjct: 332 -APINI-KGNEVHITVSIGVSLLPDDTNDVDDLLKHADTAMYRAKDDGRNTLRFF 384


>gi|325002689|ref|ZP_08123801.1| diguanylate cyclase [Pseudonocardia sp. P1]
          Length = 295

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 83/193 (43%), Gaps = 15/193 (7%)

Query: 78  ISLLLGYISGSI---LKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNEKLS 130
           + LL G    ++   L  L   +    + SR D L+   N        +  LG    ++ 
Sbjct: 71  VRLLNGPTGATVEDELDRLRREHAEAREQSRRDSLTASYNRRYLDERLVDLLGDGTGRVC 130

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +   DID+FKQ+ND  GHP GD+V+  +  +L        F  R GGEEFA      S  
Sbjct: 131 LALADIDHFKQVNDTHGHPFGDRVLQRMVHELGRELPRGAFCARYGGEEFALVLPDVSAD 190

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYV 246
           E        R+ +     +    P + +TIS G+A   H  P       ++  AD  LY 
Sbjct: 191 EGIAACEAARERVAAHDWSALH-PELRMTISIGVA---HAVPGTSGTEALVDEADLLLYT 246

Query: 247 AKKSGRNRVVCFS 259
           AK++GRN V   S
Sbjct: 247 AKQAGRNAVAHRS 259


>gi|317489391|ref|ZP_07947903.1| GGDEF domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|325832393|ref|ZP_08165367.1| diguanylate cyclase (GGDEF) domain protein [Eggerthella sp. HGA1]
 gi|316911498|gb|EFV33095.1| GGDEF domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|325486029|gb|EGC88484.1| diguanylate cyclase (GGDEF) domain protein [Eggerthella sp. HGA1]
          Length = 836

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 16/158 (10%)

Query: 107 DCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GLLN       +G         E+ +++  D+D FK +ND  GH VGD V+A ++ 
Sbjct: 668 DSLTGLLNSETTRLRIGQQLDALAGGERGALLVVDVDCFKDVNDTHGHLVGDLVLADIAR 727

Query: 161 QLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILA--NDLRKIIENSQINISSGPSI 216
            L   F     VGRLGG+EF      +GS++    +L   + LR+ +E  +     G   
Sbjct: 728 ILRENFRIGDVVGRLGGDEFMVYLDRVGSTD---VVLGKCDRLRRAVERHEY---PGTDC 781

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            +TIS G+      +    +  RAD+ALY AK+ GRNR
Sbjct: 782 RVTISVGVVLAHAGDTFDDLYGRADEALYAAKRDGRNR 819


>gi|311695626|gb|ADP98499.1| diguanylate cyclase with PAS/PAC sensor [marine bacterium HP15]
          Length = 312

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 102/224 (45%), Gaps = 22/224 (9%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISIT--ISLLLGYI-----SGSILKELFISYNRISQLS 104
           Y  LT   G EY+ + ++  V+      +  L+G++           EL     ++ + S
Sbjct: 90  YRALTE--GGEYVWLRDVVHVLRDDNGDVEALIGFMFDISERKKTEDELVALQKKLEEYS 147

Query: 105 RIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
             D L+G+ N   F + +         +   LS++  DID FK  ND  GH  GD+ +  
Sbjct: 148 YKDGLTGVANRRMFDTVMNENWNHAIRHQSSLSVILLDIDNFKAYNDLNGHLQGDECLKR 207

Query: 158 LSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGP- 214
           ++  L      P  FV R GGEEF    L  ++  AAI +A   R+++   QI     P 
Sbjct: 208 IATLLENAAQRPRDFVARFGGEEF-VIVLPETDASAAISVAERCRQLLLEEQIPQGDSPN 266

Query: 215 SIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S  +TIS GI        + I+  +   DQ LY AK+ GRNR+V
Sbjct: 267 SKKVTISMGIGTVVPSRDDCIADFLDLVDQRLYKAKRDGRNRIV 310


>gi|307720979|ref|YP_003892119.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
 gi|306979072|gb|ADN09107.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
          Length = 252

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 95/197 (48%), Gaps = 23/197 (11%)

Query: 86  SGSILKELFISYN-----RISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFF- 134
            G  + E+ + Y+     +  Q++  D L+ L N   F   L      S  +K  + F  
Sbjct: 55  DGQQIGEVIVRYDITEKKKFQQMAITDPLTNLYNRRYFNKILIREIKRSQRDKTHLAFMM 114

Query: 135 -DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEA 192
            DIDYFK+ ND++GH  GD V+  +++ L         FV RLGGEEFA       E++A
Sbjct: 115 IDIDYFKKYNDSYGHKAGDNVLVAVANTLKNSSKRASDFVFRLGGEEFAILFTTEDEKKA 174

Query: 193 AILANDLRKIIENSQI-NISSGPSIHITISAGI------AERCHKEPISTIIYRADQALY 245
                 ++K IE  QI + +S  S +IT+S G+       E   +    T+   AD ALY
Sbjct: 175 FAFTELVKKNIEKLQIPHSNSQVSKYITVSIGLLVVDFKNEMVDENGFYTM---ADDALY 231

Query: 246 VAKKSGRNRVVCFSDIE 262
            AK +GRN+V    + E
Sbjct: 232 EAKAAGRNQVTMHKNEE 248


>gi|301382365|ref|ZP_07230783.1| GGDEF domain protein [Pseudomonas syringae pv. tomato Max13]
 gi|302062375|ref|ZP_07253916.1| GGDEF domain protein [Pseudomonas syringae pv. tomato K40]
 gi|302130682|ref|ZP_07256672.1| GGDEF domain protein [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 432

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 32/228 (14%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F+ L    +   +L I+   + L+   I+ ++  E +       Q++  D L+GL    A
Sbjct: 206 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 255

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
               +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        R GG
Sbjct: 256 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGRAYRYGG 315

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218
           EEFA      +  E       +R+ I N  I   N  S P                S+ +
Sbjct: 316 EEFAIVFAAKTIDECMPHLEAIRETIANYAIQLRNKDSRPQDDQQGRQRRSGAHEASVSV 375

Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           T+S G+AER   H+ P   ++  ADQALY AK +GRN VV +  +   
Sbjct: 376 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 422


>gi|255021439|ref|ZP_05293486.1| hypothetical protein ACA_1412 [Acidithiobacillus caldus ATCC 51756]
 gi|254969144|gb|EET26659.1| hypothetical protein ACA_1412 [Acidithiobacillus caldus ATCC 51756]
          Length = 541

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 20/169 (11%)

Query: 100 ISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S L  +D L+G LN            +    +N+ L +   D+D FK+IND +GH +GD
Sbjct: 374 VSALVHVDPLTGALNRRGLAEVFRREKARAERHNQSLVLALVDLDRFKRINDRYGHDLGD 433

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+    +             R GGEE  A    S+ ++A       R ++E  Q  +  
Sbjct: 434 RVLINFCETFRRALRATDSFARYGGEELVALLPNSTAEKA-------RSVLERVQDELDR 486

Query: 213 GPSI------HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            P++       ++ SAGI +      +   I  AD+ALY AK +GR RV
Sbjct: 487 QPTMVRDGSFTVSFSAGITQWRSGMELEDCIIDADKALYAAKAAGRRRV 535


>gi|120611490|ref|YP_971168.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acidovorax citrulli AAC00-1]
 gi|120589954|gb|ABM33394.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax citrulli AAC00-1]
          Length = 1260

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 17/180 (9%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL---------GSYNEKLSIVFFDIDYFKQINDN 145
           +  + + QL+  D L+GL N       L         G +  +L + + D+D FK +ND 
Sbjct: 814 VQEDMLQQLAHFDALTGLPNRVQLARRLEQAMAHARAGGW--QLGVAYLDLDGFKPVNDR 871

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD+++  ++ +L         V RLGG+EF    L    Q  A     L +++EN
Sbjct: 872 LGHSAGDRLLVIVAGRLTRALRAVDCVARLGGDEF--VLLMPELQSHADAEQLLHRLMEN 929

Query: 206 SQINISSGPSIHITISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRNRVVCFSDIE 262
                + G    +T++A +    + E  S   T++  AD A+Y AK+ GRNRV  F  ++
Sbjct: 930 LAAPYTLGTE-RVTVTASVGYTLYPEDASDADTLLRHADHAMYGAKQGGRNRVQPFDAVQ 988


>gi|222055710|ref|YP_002538072.1| diguanylate cyclase [Geobacter sp. FRC-32]
 gi|221564999|gb|ACM20971.1| diguanylate cyclase [Geobacter sp. FRC-32]
          Length = 460

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 81/170 (47%), Gaps = 14/170 (8%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           YN    L  ID L+GL N+          +     Y+  +SI+F DID FK+IND +GH 
Sbjct: 285 YNNAKNLLYIDELTGLFNYRYLDVALEREVRRAERYSSNISIIFLDIDLFKRINDQYGHL 344

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VG K +A +   L         V R GG+E+    + +    A+++A  +R  IE     
Sbjct: 345 VGSKALAEVGLLLKKSVRDVDTVIRYGGDEYTIILIETGIDGASVVAERIRSTIEGHVFI 404

Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G  I +T S G A    + C K  +  +   ADQA+Y +K  G+N V
Sbjct: 405 QSEGLDIKLTASLGCASYPEDACTKLELLEL---ADQAMYRSKACGKNMV 451


>gi|15076965|gb|AAK82996.1|AF285783_1 unknown [Myxococcus xanthus]
          Length = 176

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 11/165 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +LS  D L+GL NH  F   L         Y++ LS++  D+DYFK+IND +GH  GD
Sbjct: 1   LQRLSSTDGLTGLHNHRHFQERLREEFRRAQRYDDSLSLILLDLDYFKEINDKYGHSAGD 60

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L         V R GGEEFA     +    A  +A  +R+ +   ++ +S 
Sbjct: 61  GVLREVAAALTRGVRETDLVARYGGEEFAVLLPRTHLTGALTVAERVRRELRALRLEVSD 120

Query: 213 GPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
             S+ +T S G++   H+  ++   ++  AD+ALY AK+ GR+R+
Sbjct: 121 --SLQVTASLGVSSFPHRTVLTPEQLLLTADEALYQAKRDGRDRI 163


>gi|91977729|ref|YP_570388.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91684185|gb|ABE40487.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB5]
          Length = 823

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 17/165 (10%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151
           +I+ ++  D L+ L N + +   L    E       +++++  D+D FK +ND+FGHP+G
Sbjct: 389 KIAHMAHHDGLTNLPNRALYQERLQQALEQGRAGGARVAVLCIDLDLFKNVNDSFGHPMG 448

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILANDLRKII----ENS 206
           D+++  ++++L    G    V R GG+EFA   A  +S  EA+  A  L +I+    +  
Sbjct: 449 DRLLRCVAERLRAQVGGQDLVARFGGDEFAIVLAQVTSPNEASDFAARLIEIVSAPYDMD 508

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
            + +  G SI I ++ G  E C       ++  AD ALY AK  G
Sbjct: 509 GLEVVIGASIGIALAPGDGEDC-----DALLRNADMALYRAKAHG 548


>gi|301326517|ref|ZP_07219862.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|300846804|gb|EFK74564.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
          Length = 463

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 2/105 (1%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           L+++   SGL  + A  S      + L+++  DIDYFK INDN+GH  GDKV++  +  +
Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
             + G    V R+GGEEFA A    +  +  ++A  +RK +E  Q
Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQQ 410


>gi|226356413|ref|YP_002786153.1| hypothetical protein Deide_14480 [Deinococcus deserti VCD115]
 gi|226318403|gb|ACO46399.1| GGDEF domain and Tetratricopeptide repeats-containing protein
           [Deinococcus deserti VCD115]
          Length = 538

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 89/182 (48%), Gaps = 10/182 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQIN 143
           L EL   + ++++ S  D L+G+ N   F+ + G+   +       S+   DID+FK +N
Sbjct: 357 LSELETLHRQVARASITDELTGVFNRH-FLMTQGAAQVRQKTGQCASVAMLDIDHFKAVN 415

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD+V+   +  L    G+   + R GGEEF         ++A +  + LR  +
Sbjct: 416 DTYGHSGGDQVLRSFAQFLQAQLGSGTLLCRFGGEEFVVIFSDMPPEQALLHLDQLR--L 473

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             + + +   PS+ ++ +AG+   C    +   + RAD  L   K+ GR R++   D+ +
Sbjct: 474 RLTDMAVPEFPSLQVSFTAGVVA-CKDGDLPEALRRADTLLLRGKRQGRGRILGDQDLPH 532

Query: 264 NT 265
            +
Sbjct: 533 QS 534


>gi|257413161|ref|ZP_04742175.2| GGDEF domain protein [Roseburia intestinalis L1-82]
 gi|257204470|gb|EEV02755.1| GGDEF domain protein [Roseburia intestinalis L1-82]
          Length = 553

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 14/212 (6%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           Y L   + E      ++  I+ LL Y+  +  KE      ++ Q++  D L+G+ N  A 
Sbjct: 346 YSLRVHIQEKHETGELAAGINELLDYVEQADRKEKE-RQQKLLQMAENDPLTGIKNKKAI 404

Query: 119 ISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPM 170
              + S        +E+++  F DID F+  N N+GH  GD VI F++  L   + G   
Sbjct: 405 EKEMLSMVQRAVESHEQITFGFVDIDDFRDYNTNYGHQEGDAVIQFVAQTLKENIHGA-- 462

Query: 171 FVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAGIA-ERC 228
            VGR+GG+EFA    G  E E     A+ + +I+    +N  +G  + +  S GI   + 
Sbjct: 463 -VGRIGGDEFAFCYAGELEPERIRHNADKILEILRTQHVNEQTGEVLPVPCSIGIVMSQG 521

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                + +I +AD A+Y AK++G+N  V   D
Sbjct: 522 DTLDYTQLIRKADLAMYQAKENGKNTFVLNVD 553


>gi|124514573|gb|EAY56085.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptospirillum rubarum]
          Length = 699

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 13/170 (7%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F       I+         ++++ DID+FK +ND  GHP GD+V+  L 
Sbjct: 268 DALTGLPNRHLFQDRLVRTIARAHRSGHSFALLYIDIDHFKNVNDRLGHPFGDRVLVELG 327

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINIS-SGPSIH 217
            +L  V      V RLGG+EFA      S++ E  +L    R+++  + +        + 
Sbjct: 328 QRLKGVVRETDTVARLGGDEFAVILEEVSDRNEGMVLG---RRLMHEASLPFRIDEARVD 384

Query: 218 ITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDIENNTC 266
           +T+S G+A+       +T++ + AD AL+  K  GRN +  FS+  N T 
Sbjct: 385 LTVSIGVAQYPEDGTDATLLVKNADIALFHVKGDGRNSIQFFSEEMNRTV 434


>gi|239996421|ref|ZP_04716945.1| sensory box/GGDEF family protein [Alteromonas macleodii ATCC 27126]
          Length = 322

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 15/184 (8%)

Query: 89  ILKELFI---SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDY 138
           IL++L +    Y  + + +  D L+GL N   F   L S   K       LS++  DID+
Sbjct: 139 ILRDLTLHKAEYAALKRKAETDFLTGLANRHKFSDYLSSQWTKCSSEGSPLSVILIDIDH 198

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           FK  ND +GH  GD+ +  + + L +          R GGEEFA      + Q A +LA 
Sbjct: 199 FKAFNDEYGHIAGDRCLKRIGELLSLSMPNRDTLAARYGGEEFAIILPNCASQTAQLLAI 258

Query: 198 DL-RKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            + R + + S  +     +  +T+S G+A  E    E I++++  AD  LY AK  GR++
Sbjct: 259 RIKRHLAQLSARHFVLASNKKLTVSMGVATNENQRYENITSLLQAADTLLYQAKSRGRDQ 318

Query: 255 VVCF 258
            +CF
Sbjct: 319 -ICF 321


>gi|163850435|ref|YP_001638478.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163662040|gb|ABY29407.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 697

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 18/163 (11%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GLLN + FI       E+L+      ++  D+D FK +ND +GH  GD+V+A ++ 
Sbjct: 270 DGLTGLLNRAGFIQR---AEEQLAAGASVCLMLLDLDGFKSVNDVYGHSTGDRVLAEVAR 326

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHIT 219
           ++ V         RLGG+EFA     +   E+ A LA  L + +     +  +G    + 
Sbjct: 327 RIRVAVPVDCDAARLGGDEFALVYDTARVIESPAALAERLIRTVAQPFESFDTG---RLG 383

Query: 220 ISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +S GI   CH+  + ++ ++  AD+ALY AK SGRN    F D
Sbjct: 384 MSIGI---CHRPSDSLTHLLSCADEALYAAKHSGRNHFHLFDD 423


>gi|83648658|ref|YP_437093.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83636701|gb|ABC32668.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 418

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 10/162 (6%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N     S+            E L+    D+D+FK+IND +GH  GD+ I   +
Sbjct: 260 DYLTGMYNRRYLFSAAKELYRVAKENGEPLTAAMIDVDHFKRINDTYGHEAGDRAICAFA 319

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +   FG      R GGEEF     G S ++ + +    R  +E + I   S   + +T
Sbjct: 320 KMIGETFGD-YLAARFGGEEFCVLFPGVSIEKISPMLESFRHKVEQTAIPFLSD-HLRLT 377

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +S G A     + +  +I RAD  LY +K +GRNR+    DI
Sbjct: 378 VSIG-ATDVLGDSLDNLIRRADVLLYESKDNGRNRLTTDEDI 418


>gi|114563976|ref|YP_751490.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114335269|gb|ABI72651.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella frigidimarina NCIMB 400]
          Length = 315

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 14/172 (8%)

Query: 106 IDCLSGLLNHSAF-----ISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+GL N   F     ++ L    EK  L+I+  DID+FK  ND +GH  GD  +  +
Sbjct: 146 LDGLTGLANRRKFDQVLPVTWLQCAREKQPLTIILLDIDFFKHFNDTYGHTEGDTCLRVV 205

Query: 159 SDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI 216
           + ++      P   V R GGEEF      +       +A  +   I + +I +I+S  S 
Sbjct: 206 AQKIQDTVNRPYDLVARYGGEEFICVLPNTDLIGGTYVAQQIVDSIVSLKIAHINSPISK 265

Query: 217 HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV-CFSDIENNT 265
            +T+SAG++     +  P   ++  AD+ LY+AK  GRNRV+ C   +E NT
Sbjct: 266 FVTVSAGVSTVVPMYDMPNKILVEAADKQLYLAKDRGRNRVLGCL--VEENT 315


>gi|317483821|ref|ZP_07942761.1| GGDEF domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316924924|gb|EFV46070.1| GGDEF domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 467

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 15/153 (9%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVF-FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           D L+GL+N   F + L     +  +VF FD+D+FK IND  GH  G++V+A +  +   +
Sbjct: 325 DKLTGLMNRERFNAILSRKLWERPLVFMFDVDHFKHINDTRGHLWGNEVLARVGHKAEEI 384

Query: 166 FGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
            G    V R GG+EF     A G +E+    L   +R  ++N           H+TIS G
Sbjct: 385 VGKAGCVARWGGDEFIGFIDAPGDAEETLRSLLESVRD-LDN-----------HVTISIG 432

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                 ++ +  I+ R D  +Y +K  GR+R+ 
Sbjct: 433 ATRINPEDDMDAILMRVDDGMYRSKAEGRDRIT 465


>gi|304410715|ref|ZP_07392333.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|307304810|ref|ZP_07584560.1| diguanylate cyclase [Shewanella baltica BA175]
 gi|304351199|gb|EFM15599.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|306912212|gb|EFN42636.1| diguanylate cyclase [Shewanella baltica BA175]
          Length = 323

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
            +  +  L+ +D L+G  N  A  S + +          K  +   D+DYFK +ND FGH
Sbjct: 157 QFRLLETLNSVDPLTGAFNRRAMGSDMEAALSNAERNGVKHLLAILDLDYFKTVNDKFGH 216

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+V+           G    + R GGEEF       SEQ+  I    LR  I+    
Sbjct: 217 AVGDQVLKRFVAITTSHLGKNDRLYRFGGEEFVLLIPEMSEQDEFI--QHLRMAIKK--- 271

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +++     IT+S G+A         T + RA++ALY+AK+ GR+
Sbjct: 272 ELTTPDGKEITVSFGVAPWVPGTTTDTWLQRANEALYLAKQQGRD 316


>gi|302529694|ref|ZP_07282036.1| predicted protein [Streptomyces sp. AA4]
 gi|302438589|gb|EFL10405.1| predicted protein [Streptomyces sp. AA4]
          Length = 454

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 14/186 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           ++L       N++   +R D  +G+ N   +  S            E L+++  D+D+FK
Sbjct: 264 TVLGNRLAEINQLQSEARTDPKTGIFNVRGWSESAERALARAARGGETLALLMIDLDHFK 323

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GHP GD V+  ++  L  +      +GR GGEEF           A + A  +R
Sbjct: 324 WINDTYGHPAGDDVLRTVAQTLDEITRPKDIIGRFGGEEFLILLPDVDTTAAKVTAERIR 383

Query: 201 KIIENSQINISS--GPSIHI---TISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
             I + +I  +   G S  I   T S G+A    +   +  ++  AD A+Y AK+ GRN+
Sbjct: 384 TAIADQRIVTTDKRGGSALITGRTASIGVALLGVNGTALEQLLQAADAAVYTAKEGGRNQ 443

Query: 255 VVCFSD 260
            V F+D
Sbjct: 444 -VRFAD 448


>gi|296120366|ref|YP_003628144.1| diguanylate cyclase [Planctomyces limnophilus DSM 3776]
 gi|296012706|gb|ADG65945.1| diguanylate cyclase [Planctomyces limnophilus DSM 3776]
          Length = 577

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 87/181 (48%), Gaps = 17/181 (9%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEKL----SIVFFDIDYFKQINDNF 146
           I++ ++ + +R D L+ L N   F       + S  + L    S++  D+D FK IND +
Sbjct: 389 INFLQMERQARQDGLTDLANRRTFDLQLAREIDSVQQGLGLECSLLLCDLDRFKSINDQY 448

Query: 147 GHPVGDKVI----AFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           GH  GD V+      L +Q+  +  G    + R GGEE A    G     A  +A  +R 
Sbjct: 449 GHQAGDLVLRETAQILREQMGKIRSGDRALLARYGGEEMAILLPGVGITGALRIAEGIRA 508

Query: 202 IIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I++    + S   + +TIS G+A  C  H      +I  AD ALY AK +GRNRV C  
Sbjct: 509 AIDSHPFAVESA-LLTVTISVGVAT-CPLHASSPEALISAADAALYEAKSAGRNRVCCAQ 566

Query: 260 D 260
           +
Sbjct: 567 E 567


>gi|206975811|ref|ZP_03236722.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97]
 gi|206745905|gb|EDZ57301.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97]
          Length = 604

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 27/184 (14%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144
           L+    ++  L+  D L+GL N   F   L         S N+ ++++F D+D FK+IND
Sbjct: 165 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 223

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
             GH VGD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +    
Sbjct: 224 RLGHDVGDLLLIEVAKRLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQI---- 279

Query: 204 ENSQINISSGP------SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               +NI + P       + IT S GIA    C  + ++ ++  AD A+Y AK +G+NR 
Sbjct: 280 ----LNILNKPFFIKDEELSITPSIGIAMYPDCGTD-VTALMKNADMAMYRAKANGKNRF 334

Query: 256 VCFS 259
           + FS
Sbjct: 335 IFFS 338


>gi|153010456|ref|YP_001371670.1| diguanylate cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC
           49188]
 gi|151562344|gb|ABS15841.1| diguanylate cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC
           49188]
          Length = 658

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 112/260 (43%), Gaps = 36/260 (13%)

Query: 24  PHTFMIYFSIFFSIFI--ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL 81
           P T +   ++ + + +  A    +  + L Y GL        +++  + LVI+ +  + L
Sbjct: 139 PMTALASSAVEYDVGLIDAAQAEVRQLHLIYTGLAAG-----LILCGVVLVILLLRHNKL 193

Query: 82  LGYISGSILK----------ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS- 130
           L    GS+ +          EL     R+   +  D L+GL N   F   L    E    
Sbjct: 194 LDRAHGSMQRLTSDLRQATGELQSQNFRLEHDAHHDALTGLPNRVLFRQDLEKRLEAAQT 253

Query: 131 ------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
                 I+  D+D FK +ND  GH VGD ++  ++ +L  +      V RLGG+EFA  +
Sbjct: 254 GSQSAIILLLDLDGFKDVNDTLGHDVGDALLQAVARRLTKLGERGDMVCRLGGDEFAVLS 313

Query: 185 LGSSEQEAAILANDLRKIIEN----SQINISSGPSIHITISAGIAERCHKEPISTIIYR- 239
            G  E+EA  LA+ L  +I       ++ I  G  + + IS G       EP +  +++ 
Sbjct: 314 TGLREEEALELADRLMDVISQPYHVGELEIKIGTCVGVAISEG-------EPDTEELFKH 366

Query: 240 ADQALYVAKKSGRNRVVCFS 259
           AD ALY AK  G      F 
Sbjct: 367 ADLALYEAKALGPGHASVFK 386


>gi|157960507|ref|YP_001500541.1| TPR repeat-containing diguanylate cyclase and serine/threonine
           protein kinase [Shewanella pealeana ATCC 700345]
 gi|157845507|gb|ABV86006.1| diguanylate cyclase and serine/threonine protein kinase with TPR
           repeats [Shewanella pealeana ATCC 700345]
          Length = 684

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 9/171 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+ S       ++ D L+G+ N +         I         L+++ FDID FK IND 
Sbjct: 508 LWQSRKAFKHSAQTDFLTGIANRAHVFNRGQRMIDRAIKKKHPLAVIIFDIDNFKSINDQ 567

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH VGD  I  ++ +          +GR+GGEEF       +E +A +++  LR+ I  
Sbjct: 568 YGHQVGDLAIKAVAKRGERWLRDCDLIGRIGGEEFLIVLPDVTEADAILISERLREGIA- 626

Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           SQ        I +T+S G+A  +  +  ++ ++  AD+ LY AK SG+NRV
Sbjct: 627 SQAFKFDDVVIELTVSIGVAALKPPQTRLTDLVNLADKGLYKAKFSGKNRV 677


>gi|158319734|ref|YP_001512241.1| diguanylate cyclase with PAS/PAC sensor [Alkaliphilus oremlandii
           OhILAs]
 gi|158139933|gb|ABW18245.1| diguanylate cyclase with PAS/PAC sensor [Alkaliphilus oremlandii
           OhILAs]
          Length = 303

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 10/161 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
           ++I  L++ D L+ + N +  IS L           E L+ + FD+D FK IND FGHP 
Sbjct: 127 DKIVYLAKYDPLTNIPNRANIISQLDDAIKEAEFDQENLAFLIFDLDKFKMINDTFGHPT 186

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQIN 209
           GDKV+ +++  +  +      VGR GG+EF          ++   + N +  + ++    
Sbjct: 187 GDKVLQYVASTVQGLLRPYDSVGRFGGDEFVIILRKIKGHRDVLSVVNRIFDVFKSP--T 244

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           I     I I+IS GI      +   ++IY+AD A+Y AKK+
Sbjct: 245 ILEDNHIQISISIGICLLSEAKNRDSLIYQADTAMYEAKKT 285


>gi|46198754|ref|YP_004421.1| putative response regulator [Thermus thermophilus HB27]
 gi|46196377|gb|AAS80794.1| putative response regulator [Thermus thermophilus HB27]
          Length = 229

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 19/158 (12%)

Query: 109 LSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GL N  A   +L     ++       ++V  D+D FK++ND  GH  GD+ +  ++  
Sbjct: 79  LTGLPNRRALEMALEREAARVERGGPPFALVLVDLDGFKRVNDEGGHREGDRYLRRVARA 138

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           LV        V R GG+EFA   LG+ E+EA  +A  L + ++   ++ S G    + + 
Sbjct: 139 LVSGVRRGDLVARWGGDEFAVLLLGTGEKEAVEVAERLGRRLQEEGVSASLG----VAVY 194

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           AG  E         +  RADQALY AK  G+ RVV  S
Sbjct: 195 AGDLE--------DLFLRADQALYRAKALGKGRVVLAS 224


>gi|34498537|ref|NP_902752.1| GGDEF family regulatory protein [Chromobacterium violaceum ATCC
           12472]
 gi|34104393|gb|AAQ60751.1| probable GGDEF family regulatory protein [Chromobacterium violaceum
           ATCC 12472]
          Length = 338

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +   DID+FK++ND FGH VGD+V+  ++  +   F     + R GGEEFA    G+  +
Sbjct: 194 LALLDIDHFKRVNDQFGHMVGDEVLLLMAQLMQQSFREEDGLFRYGGEEFALLLQGNQPE 253

Query: 191 EAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            A       R  +E         P + +ITIS G     H +    +I +AD+ALY AK 
Sbjct: 254 IAEQALERFRATVEGHIF-----PQVGNITISIGHTRIVHGQLPDRLIEQADRALYYAKS 308

Query: 250 SGRNRVVCFSDIE 262
            GRN+V  +  +E
Sbjct: 309 HGRNQVRGYEQLE 321


>gi|255318504|ref|ZP_05359737.1| diguanylate cyclase [Acinetobacter radioresistens SK82]
 gi|262378732|ref|ZP_06071889.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255304496|gb|EET83680.1| diguanylate cyclase [Acinetobacter radioresistens SK82]
 gi|262300017|gb|EEY87929.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 519

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 73/151 (48%), Gaps = 8/151 (5%)

Query: 107 DCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL+N      S+    +     SI+  DID+FK++ND +GH  GD V+  +++ + 
Sbjct: 369 DPLTGLMNRRGMHLSIDQKIALKIPFSILLIDIDFFKRVNDTYGHAEGDLVLKNIAEMMQ 428

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
             F       R GGEEF       S+Q+    A   R+ +E   I         IT+S G
Sbjct: 429 KNFRKDDVCCRYGGEEFIVIVPDVSQQDVYESAERFRREVEAQSIEKVGS----ITVSIG 484

Query: 224 IAERCH-KEPISTIIYRADQALYVAKKSGRN 253
           IA      E IS +   AD+ LY AK SGRN
Sbjct: 485 IASWPEASEDISEVFILADKNLYEAKNSGRN 515


>gi|255101535|ref|ZP_05330512.1| putative signaling protein [Clostridium difficile QCD-63q42]
          Length = 628

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 14/164 (8%)

Query: 107 DCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+ L N       L    G+ ++ +  +  DID FK  NDN+GH  GDKVI  ++D +
Sbjct: 463 DGLTKLYNRRYLEQQLDLFNGTRDKNMVAILVDIDCFKSYNDNYGHLAGDKVIVKVTDII 522

Query: 163 VVVF-GTPMFVGRLGGEEF-----AAAALGSSE-QEAAILANDLRKIIENSQI-NISSGP 214
             VF      + R GGEE      +  ++G  E     +    + K++E   I +I S  
Sbjct: 523 RSVFIDITEHIIRYGGEEILILVDSIESIGVEEIDNIELYIKRVFKLLEFEGIEHIYSKI 582

Query: 215 SIHITISAGIA-ERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
             +ITISAG++ +RCH ++ +  +I  AD+ LY +KK+GRN+ +
Sbjct: 583 KNYITISAGVSIKRCHSRKDVEILIEDADKNLYKSKKAGRNQYI 626


>gi|192292502|ref|YP_001993107.1| diguanylate cyclase with PAS/PAC sensor [Rhodopseudomonas palustris
           TIE-1]
 gi|192286251|gb|ACF02632.1| diguanylate cyclase with PAS/PAC sensor [Rhodopseudomonas palustris
           TIE-1]
          Length = 630

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 87/173 (50%), Gaps = 16/173 (9%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           KE+     R+++L+R D L+GL N      F++ + + +  LS++  D+D FK  ND+FG
Sbjct: 435 KEVEALNARLAELARTDGLTGLPNRRSLDGFVARVITSSPTLSVLMIDVDDFKGFNDHFG 494

Query: 148 HPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           H  GD  +     QL  +FG  +     F  R GGEEF      +    A   A  L+  
Sbjct: 495 HQGGDDALR----QLGHLFGGLVANVHGFAARYGGEEFTIVLPSADAVAAVDFAESLQAA 550

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPI-STIIYR-ADQALYVAKKSGRN 253
           +    I   +    ++T+S GIA  C   P  ST++ R AD ALY AK+ GR+
Sbjct: 551 VRTLAIRNPASARGYLTVSIGIA--CGTAPCDSTVLLRDADIALYEAKRRGRD 601


>gi|149909555|ref|ZP_01898209.1| methyl-accepting chemotaxis protein-like protein [Moritella sp.
           PE36]
 gi|149807460|gb|EDM67411.1| methyl-accepting chemotaxis protein-like protein [Moritella sp.
           PE36]
          Length = 386

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 119/252 (47%), Gaps = 33/252 (13%)

Query: 18  NLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISIT 77
           +LE +S   ++ YFS +    I T I++ +                 + +N+   ++  +
Sbjct: 156 SLEQYSKIAYVSYFSPW-DWLIGTGIYLDD-----------------MEQNVFWTVVKAS 197

Query: 78  ISLLLGYIS--GSILKELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEK 128
             LL G++   G+ +  +    N++S+ S  D L+ L             + +    N  
Sbjct: 198 GILLFGFVLFIGTAIVIVNFVVNQLSEQSVRDTLTKLYTKRFLEEVIPGMLENEKRNNRT 257

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+ VF DID+FK +ND++GH  GDKV+  ++  ++    +  +  R GG+EF    +G  
Sbjct: 258 LAAVFMDIDHFKDVNDSYGHDCGDKVLQKIAQVMLENTRSGDYCIRYGGDEF--VIIGPC 315

Query: 189 EQEAAILANDLRKIIENSQINISSGPSI--HITISAGIA-ERCHKEPISTIIYRADQALY 245
           + +  ++A  + +I E +   + S   I   +T+SAGIA    H +     + +AD  LY
Sbjct: 316 DDDKNVIAV-VERIREEAAALVFSHHDIDFKVTLSAGIALYENHHDSFDETLIQADMKLY 374

Query: 246 VAKKSGRNRVVC 257
            AKK GRN VV 
Sbjct: 375 QAKKMGRNCVVA 386


>gi|194365644|ref|YP_002028254.1| diguanylate cyclase/phosphodiesterase [Stenotrophomonas maltophilia
           R551-3]
 gi|194348448|gb|ACF51571.1| diguanylate cyclase/phosphodiesterase [Stenotrophomonas maltophilia
           R551-3]
          Length = 710

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 78/146 (53%), Gaps = 15/146 (10%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           + +++F D+D FKQ+ND +GH  GD ++  ++++   +      + RLGG+EF       
Sbjct: 300 RFAVMFMDLDGFKQVNDAYGHQAGDALLVAVAERTRQLLRPNDMLARLGGDEFVLVVRIE 359

Query: 188 SEQEAAILANDLRKIIENSQINISSGP-----SIHITISAGIAERC--HKEPISTIIYRA 240
            +++   LA   R+I++     + SGP      + +T S G+A  C  H      ++  A
Sbjct: 360 HDEDLPTLA---RRILQ----AVGSGPLLADNELQVTASIGVAI-CPDHAASERQLMAFA 411

Query: 241 DQALYVAKKSGRNRVVCFSDIENNTC 266
           D A+Y AK+SGRN  V F+D  N++ 
Sbjct: 412 DAAMYQAKESGRNAFVLFADWMNDSA 437


>gi|114705392|ref|ZP_01438300.1| diguanylate cyclase/phosphodiesterase [Fulvimarina pelagi HTCC2506]
 gi|114540177|gb|EAU43297.1| diguanylate cyclase/phosphodiesterase [Fulvimarina pelagi HTCC2506]
          Length = 489

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 9/162 (5%)

Query: 107 DCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+GL N  AF   +  Y          K++++ FDID FK +ND  GH  GD+++   
Sbjct: 48  DELTGLPNRRAFSGHIEQYFRDSGSKAETKVAMLLFDIDNFKLVNDEHGHEGGDQLLRAF 107

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           S++++   G      RLGG+EFA A  G   +E +        ++       +    +  
Sbjct: 108 SERILEAVGPECLFARLGGDEFAIAMFGEEAEERSREMASRLSVLSKKPYECAGRTLVAT 167

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +   G+A   +   +  I+ RAD ALY AK++ R+   CF D
Sbjct: 168 SSIGGVACGGNLADVPAIMRRADIALYNAKENKRS-AACFYD 208


>gi|91780085|ref|YP_555292.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia xenovorans LB400]
 gi|91692745|gb|ABE35942.1| Putative diguanylate cyclase(GGDEF)/ phosphodiesterase(EAL) with
           PAS/PAC and GAF sensors [Burkholderia xenovorans LB400]
          Length = 847

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 11/168 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI QL+  D L+GL N + F       ++       +L++VF D+D+FK++ND  GH  G
Sbjct: 411 RIHQLAFHDTLTGLPNRNMFETQAQQLLNDARRTERELALVFIDLDHFKRVNDTRGHATG 470

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+     +   V      +GRL G+EF A        +A  +    R +   +   + 
Sbjct: 471 DEVLCETGRRFKSVLRDGDLLGRLAGDEFVAILPHCGVHQATGIVE--RLLAATAPPVVV 528

Query: 212 SGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +G  IH + S GIA      E + T++ +AD A+Y AK  GR    CF
Sbjct: 529 AGAPIHASASIGIAMYPADGEHVPTLLRQADIAMYHAKARGRGH-FCF 575


>gi|83951280|ref|ZP_00960012.1| diguanylate cyclase, putative/response regulator [Roseovarius
           nubinhibens ISM]
 gi|83836286|gb|EAP75583.1| diguanylate cyclase, putative/response regulator [Roseovarius
           nubinhibens ISM]
          Length = 471

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 84/172 (48%), Gaps = 23/172 (13%)

Query: 107 DCLSGLLNHS---AFISSLGSYNEK---------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           D L+GL N      F+  + S  E           +++  D+D+FK IND +GH  GD+V
Sbjct: 294 DPLTGLYNRRFALPFLERVCSGQEGAGTDTLETGFAVMLADLDFFKNINDKYGHSGGDQV 353

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS--S 212
           +  ++D    +      V R+GGEEF     G +  EA   A+ + + I ++ I ++  S
Sbjct: 354 LRQVADHFRAILRDCDMVARIGGEEFLLVCPGVTPDEARQTADRICREIADTAIPLTGYS 413

Query: 213 GPSIHITISAGI----AERCHKEPI----STIIYRADQALYVAKKSGRNRVV 256
            P +HIT+S G+    A R    P       ++ RAD ALY +K  GRN V 
Sbjct: 414 QP-VHITVSIGLVMGRAGRGELSPTGGESERLLARADAALYASKAHGRNTVT 464


>gi|127511728|ref|YP_001092925.1| diguanylate cyclase [Shewanella loihica PV-4]
 gi|126637023|gb|ABO22666.1| diguanylate cyclase [Shewanella loihica PV-4]
          Length = 394

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 97/201 (48%), Gaps = 23/201 (11%)

Query: 71  LVIISITISLLLGYISGSILK-----ELFISYNRISQLSRIDCLSGLLNHSAF------- 118
           LVII     +LL +   +IL+     +L   + R   ++ ID L+ L N   F       
Sbjct: 179 LVIIITGQKVLLQWFRKAILRDAEKQQLLQQFKR---MALIDGLTDLSNRRHFDEVLALE 235

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGG 177
           I +     + LS++  D+D+FK++ND+ GH  GD+ +  L + L  V   P     R GG
Sbjct: 236 IKAAERTGDPLSMILLDVDFFKRLNDSLGHSDGDRCLVRLGEVLHGVASRPRDLAARYGG 295

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEP---I 233
           EEFA     +    A  +A  +R  ++ ++I +  S    ++T+S G+   C  +P    
Sbjct: 296 EEFAIILPDTDLSGARHIAEQIRYELKAAEIPHPDSTLGAYVTVSQGV---CLWQPGLDA 352

Query: 234 STIIYRADQALYVAKKSGRNR 254
             ++  ADQ LY +K  GR+R
Sbjct: 353 DELLASADQLLYQSKAQGRDR 373


>gi|46205306|ref|ZP_00209791.1| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 142

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 2/135 (1%)

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQE 191
             D D+FK+ ND +GH VGD+V+  L+  L      P   V R+GGEEFA     + E  
Sbjct: 1   HVDADHFKRCNDRYGHAVGDEVLKGLARCLGASVHQPDDLVARIGGEEFAVLLPETDENG 60

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKS 250
           A  +A  + + +    +  S      +T+S G+A +   +  +  +  RAD ALY AK S
Sbjct: 61  ATRVAQAIHRAVATLAVPASGLGVGAVTVSVGLAVDAAGEGELGDLYRRADAALYEAKAS 120

Query: 251 GRNRVVCFSDIENNT 265
           GRNR  C S   N T
Sbjct: 121 GRNRTQCASAPANRT 135


>gi|330873415|gb|EGH07564.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 398

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 98/211 (46%), Gaps = 26/211 (12%)

Query: 68  NLSLVIISITISLLLGYI--SGSILKELFISYNRISQL-----SRIDCLSGLLNHSAFIS 120
           N  L + ++ + L+  Y     S L  LF    R+ Q+     +R D L+ L N      
Sbjct: 191 NALLFVSTVMLMLMASYFLERASRLSYLFALRGRLLQVQLLEFARTDALTRLFNRRYQDE 250

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS---DQLVVVFGTPM 170
            L S  E+       ++I+  DID+FK  NDN+GHP GD  +  L     Q     G   
Sbjct: 251 VLTSVWERARKKQANVAIILLDIDHFKSYNDNYGHPQGDVCLKLLCKAIQQSAHDGGAVA 310

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCH 229
           F  R GGEE     + +   +A  +A  L+  +   ++ + + G + H+TIS G+A    
Sbjct: 311 F--RFGGEE-VLVLMNADAGQATKMAETLKATVAALKLPHPALGENAHVTISLGVASGI- 366

Query: 230 KEPI---STIIYRADQALYVAKKSGRNRVVC 257
             P+    T+I  AD ALY AK +GRN V C
Sbjct: 367 -APLITYDTLISAADNALYAAKHAGRNCVFC 396


>gi|330503952|ref|YP_004380821.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328918238|gb|AEB59069.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 386

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 89/171 (52%), Gaps = 15/171 (8%)

Query: 100 ISQLSRI----DCLSGLLNHSAF---ISSLGSYNEK----LSIVFFDIDYFKQINDNFGH 148
           IS+L R+    D L+GL N  +F      L    ++    L+++  DID+FK  ND +GH
Sbjct: 214 ISRLMRLLAYHDSLTGLHNRRSFNRQFERLWRQAQRDGKSLALLLCDIDHFKAYNDCYGH 273

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
             GD  +  +   +      P+ +G RLGGEEFA         EA   A  LR+ +E + 
Sbjct: 274 QAGDVALQRVGALIEQAARRPLDIGVRLGGEEFALLLFDIGADEARQRAEALRQSLEEAG 333

Query: 208 I-NISSGPSIHITISAGIAERCHK-EP-ISTIIYRADQALYVAKKSGRNRV 255
           I +  S     +T+S G+A  C + +P +S +  +AD+ALY AK  GRN+V
Sbjct: 334 IAHRGSDSGDMLTMSIGVACLCPETQPELSQLYEQADRALYEAKAFGRNQV 384


>gi|329913210|ref|ZP_08275906.1| hypothetical protein IMCC9480_1122 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545406|gb|EGF30622.1| hypothetical protein IMCC9480_1122 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 942

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 10/172 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +S  +  D L+G+LN  AF + L +         + ++++ D+D FK +ND  GH  GD+
Sbjct: 491 LSHQANHDALTGVLNRRAFEARLNALISDTASQRQYAVLYLDLDQFKVVNDTCGHAAGDE 550

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +I  +S  L         + RLGG+EF    L   + +A  +A  LR+ +   +  I  G
Sbjct: 551 LICQISMILQQSIREGDLLARLGGDEFGIVLLDCGDSDAMRIAEQLRESVAAIRF-IWGG 609

Query: 214 PSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCF--SDIE 262
               + +S G+         +  ++  AD A Y+AK+ GRNRV  +   DIE
Sbjct: 610 QRFTVGVSVGMVALARGGSTLKEVMKSADAACYMAKEKGRNRVHVYRTDDIE 661


>gi|307304385|ref|ZP_07584136.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sinorhizobium meliloti BL225C]
 gi|306902587|gb|EFN33181.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sinorhizobium meliloti BL225C]
          Length = 1071

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 9/169 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE-KLSIVFFDIDYFKQINDN 145
           ++  ++  +++ ++R D L+GL N       F  +L   N  +++++  D+D FK +ND 
Sbjct: 637 EDTLLAQKQMAHMARHDMLTGLANRMFFRECFEEALNESNHARMAVLCLDLDGFKAVNDT 696

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKIIE 204
            GHP GD ++  +S +L+    T   V RLGG+EFA    L  S  EA  LA   R I  
Sbjct: 697 LGHPAGDALLRQVSTRLIQAVRTTETVARLGGDEFAIIQPLTESRDEAFRLAQ--RLIDT 754

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252
            S+     G S ++  S GIA           +I  AD ALY AK SGR
Sbjct: 755 LSEPFSIEGASANVGTSIGIAFAPEDGTSADELIKAADIALYSAKSSGR 803


>gi|170727890|ref|YP_001761916.1| diguanylate cyclase/phosphodiesterase [Shewanella woodyi ATCC
           51908]
 gi|169813237|gb|ACA87821.1| diguanylate cyclase/phosphodiesterase [Shewanella woodyi ATCC
           51908]
          Length = 677

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 17/184 (9%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
            IL +   + +++ +++  D L+GL N +  + ++         +  + S+VF D+D FK
Sbjct: 232 QILIQFSQTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRARVHKNQFSMVFIDLDRFK 291

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILAND 198
            +ND+ GH +GDK +A ++  L  V G    V RLGG+EF   A  + + +Q A  + N 
Sbjct: 292 NVNDSLGHALGDKFLARIARVLERVVGDKGTVARLGGDEFVILADEIQTPDQAADFVDNL 351

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255
           L ++    Q+N     +IH   S GI+   + +   T   +I  AD A+Y AK +G N+ 
Sbjct: 352 LIQLNTPMQLNEH---TIHPAASVGIS--IYPDDGMTAEDLIRHADIAMYSAKAAGSNQW 406

Query: 256 VCFS 259
             F 
Sbjct: 407 AFFK 410


>gi|95931432|ref|ZP_01314139.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95132526|gb|EAT14218.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 194

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 16/173 (9%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           +++R+ +L   D L+GL N   F       I+    ++  LS+VF D+D+FK +NDN GH
Sbjct: 24  NFSRVRELVITDDLTGLYNARYFDDLLDVEIARAQRFDSTLSLVFIDLDFFKLVNDNHGH 83

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VG +++A +   L     T  +  R GG+EF      +S++ A  L   LR+++ +  +
Sbjct: 84  LVGSRMLAEIGQLLKSRIRTVDYGARYGGDEFVLILPQTSKKGAYDLVCSLRELVRSHVL 143

Query: 209 NISSGPSIHITISAGIAERCHKEPIST-----IIYRADQALYVAKKSGRNRVV 256
               G  I +T S GIA      PI       +I  AD  +Y  K++ R+ V+
Sbjct: 144 LTEDGSEIRVTASFGIA----AYPIDADNKIDLIRLADNMMYKVKQTTRDGVL 192


>gi|222149275|ref|YP_002550232.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221736259|gb|ACM37222.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 511

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 88/180 (48%), Gaps = 14/180 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           +EL     R   L++ D L+GL N  +F + L           +++++V  D+D FK IN
Sbjct: 65  EELVQERERAIALAQQDQLTGLANRRSFTAVLTDACQKSRLRGDRVTVVLVDMDRFKAIN 124

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRK 201
           D +GH  GD V+   + +L+V  G P  V RLGG+EFA     L     + A +++    
Sbjct: 125 DAYGHEAGDAVLREFARRLMVAAG-PGTVARLGGDEFALILDHLSDVTADHAFVSSFRAS 183

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSD 260
           + E    N   G  + ++ S G A        ST + R AD ALYV+KK+G +    F D
Sbjct: 184 LQEPVLFN---GKRLEVSASIGYASLPDHAASSTELLRHADMALYVSKKAGLSLATAFDD 240


>gi|166712813|ref|ZP_02244020.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 532

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 78/159 (49%), Gaps = 12/159 (7%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      SL             LS++  D+D+FKQ ND+ GH  GD ++A + 
Sbjct: 365 DALTGLYNRRYLEESLSHELARCARRGLPLSVLMLDVDHFKQFNDSQGHAGGDLLLAAVG 424

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L+    T     R GGEEF      +  +EA  +A  +R  I  + + +S G      
Sbjct: 425 ELLLTRLRTEDVACRYGGEEFTVRLPEADGEEALRVAEQIRDYI--AALAVSDGARALPK 482

Query: 220 ISA--GIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++A  G+A      E  +++I +AD ALY AK  GRNRV
Sbjct: 483 VTALIGVASFPADGEQGASLIQKADAALYRAKHRGRNRV 521


>gi|157373970|ref|YP_001472570.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157316344|gb|ABV35442.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 351

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 11/197 (5%)

Query: 71  LVIISITISLLLGYISGSILKELFISY--NRISQLSRIDCLSGLLNHSAF-------ISS 121
           L I+     +L  +   +I++++   Y   +  +++ +D L+ + N   F       I +
Sbjct: 153 LAILVTGQKVLYSWFKKAIVRDVEKQYLLKQFRRMALVDGLTNISNRRHFDEILSQEIRA 212

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEF 180
               N  LS++  DIDYFK++ND+ GH VGD+ +  ++  L V+   P     R GGEEF
Sbjct: 213 SERNNHPLSLILIDIDYFKRLNDSSGHQVGDECLVEVAKVLAVICHRPRDLAARYGGEEF 272

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYR 239
                 +       +A  +R  +   +++       H IT+S G+ +          I +
Sbjct: 273 VLLLPDTGLSGGCQIAKKVRDKLAGIKLDHPDSELGHYITVSQGVCQWREGMSADDFISK 332

Query: 240 ADQALYVAKKSGRNRVV 256
           AD  LY AK +GR+R V
Sbjct: 333 ADTLLYRAKSTGRDRYV 349


>gi|153833810|ref|ZP_01986477.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Vibrio
           harveyi HY01]
 gi|148869868|gb|EDL68836.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Vibrio
           harveyi HY01]
          Length = 815

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 91/171 (53%), Gaps = 12/171 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
           ++ +++  D L+ L N +  IS L  + E         + +F DID+FK IND+ GH  G
Sbjct: 389 KLQRMAFYDPLTNLPNRTHLISLLEQHIENGQKHQHAFATLFLDIDHFKHINDSMGHFCG 448

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQIN 209
           D+++  L+++L  V      V R+GG+EF    L + E ++ ++ + +  I+   N    
Sbjct: 449 DQLLTKLAERLQDVLHLRAHVARIGGDEF-VIILPNIESDSQLI-DTIEDILCLFNRPFE 506

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +S   S+ I+ S G+A      +   T++  AD A+Y+AKK+GRN    +S
Sbjct: 507 VSKNESLRISTSVGVARYPQDGQDSETLLKNADTAMYLAKKNGRNGYAFYS 557


>gi|217973280|ref|YP_002358031.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica OS223]
 gi|217498415|gb|ACK46608.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica OS223]
          Length = 546

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 12/160 (7%)

Query: 107 DCLSGLLNHSA-FISSLGSYN------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLNH+   +++   YN       ++ I  FD+D+FK++ND +GH  GDKV+   +
Sbjct: 384 DSLTGLLNHTQILVAARRCYNVARRINSQVCIAMFDLDHFKKVNDTYGHAGGDKVLLAFA 443

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L        F GR GGEEF        +  A    N +R+   +  + +       +T
Sbjct: 444 HLLQQSLRQTDFTGRYGGEEFMLVLPDMQKPLAIAKLNAIRESFSHI-VFVEDAVEFKVT 502

Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+  ++ C  E     +  AD+ LY AK+ GRN++V 
Sbjct: 503 LSGGLVFSDEC--EEFQDCLLLADKNLYEAKRLGRNQLVV 540


>gi|134094840|ref|YP_001099915.1| hypothetical protein HEAR1631 [Herminiimonas arsenicoxydans]
 gi|133738743|emb|CAL61790.1| Conserved hypothetical protein, GGDEF domain [Herminiimonas
           arsenicoxydans]
          Length = 526

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 14/167 (8%)

Query: 107 DCLSGLLNHSAFIS------SLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F        +L   N+  LS+++ D+D FK +ND +GH  GD+++  ++
Sbjct: 363 DVLTGLANRGLFDEIVNQQLALCERNQTSLSVLYIDLDGFKAVNDAYGHETGDQLLCEVA 422

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHI 218
            +L         V RLGG+EFA   +G+  ++AA  A    K++E+ S + +    S HI
Sbjct: 423 ARLKASSRHSDLVARLGGDEFAIVMVGTGLKDAAFFAE---KLVESLSAVYVFGNLSAHI 479

Query: 219 TISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + S G+A    C     + + Y AD+A+Y AK +GR + V     E 
Sbjct: 480 SASIGVASYPDCALTSDALLQY-ADRAMYQAKGAGRRQAVMAPPAER 525


>gi|307544296|ref|YP_003896775.1| diguanylate cyclase with PAS/PAC sensor [Halomonas elongata DSM
           2581]
 gi|307216320|emb|CBV41590.1| diguanylate cyclase with PAS/PAC sensor [Halomonas elongata DSM
           2581]
          Length = 687

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 11/163 (6%)

Query: 107 DCLSGLLNHSAFI----SSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN          +L  + +  +   ++ FD+D FK IND  GH +GD+++  ++
Sbjct: 526 DPLTGLLNRRGLERRLEEALADWRKTGTPSVLLIFDLDRFKPINDLGGHALGDEMLCQVA 585

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L           R GG+EFA      + + A  +A  LR+ I   Q+ +  G    +T
Sbjct: 586 RALSRTVRRSDHTARQGGDEFAVLLPSCTFERAQDIAESLRETIRELQV-VHGGRVFSVT 644

Query: 220 ISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +S G+   ER  +  I +++ RAD A Y AK+ GR+RVV   +
Sbjct: 645 LSLGVTCFERGDQR-IESVMQRADAASYRAKRMGRDRVVMHGE 686


>gi|291566707|dbj|BAI88979.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 501

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 16/179 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYN--------EKLSIVFFDIDYFKQINDNFGHPVG 151
           + +L+  D L+ + N   F   L +YN        E ++++  D+DYFK  ND FGH  G
Sbjct: 304 LQRLALYDDLTQVANRRRFNEYL-AYNWHRCSREQEPIALILCDVDYFKPYNDTFGHQAG 362

Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-N 209
           D  +  ++  +       +  V R GGEEFA     +    A  +A  +RK +EN ++ +
Sbjct: 363 DDCLHKIARAISGAIQRSVDLVARYGGEEFAIILPNTPINGAVKVAERIRKEVENLRVPH 422

Query: 210 ISSGPSIHITISAGIAER-CHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             S  S ++T+S G+A +  H E  + ++I +AD+ALY AK  GRN   C    E+ +C
Sbjct: 423 PGSQSSDYVTVSLGVACKIPHSELSVDSLIAQADEALYQAKNQGRN---CTVIAESPSC 478


>gi|161521657|ref|YP_001585084.1| RNase II stability modulator [Burkholderia multivorans ATCC 17616]
 gi|189352176|ref|YP_001947803.1| RNase II stability modulator [Burkholderia multivorans ATCC 17616]
 gi|160345707|gb|ABX18792.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia multivorans ATCC 17616]
 gi|189336198|dbj|BAG45267.1| signal transduction GGDEF/EAL domain protein [Burkholderia
           multivorans ATCC 17616]
          Length = 667

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 17/186 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDID 137
           SG  + E   +  R+++L+  D L+GL N  A             G    ++ I+F D+D
Sbjct: 218 SGIDITEERNAQQRLTELANTDVLTGLPNRHAISERIRTVIAQQTGDTPGQVGILFLDLD 277

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE----FAAAALGSSEQEAA 193
            FK++ND++GH  GD+++  +S  +     +   + RLGG+E    F        E  A 
Sbjct: 278 NFKRVNDHYGHITGDRLLQDVSAIISGCLPSGATLARLGGDEFLVLFEQGTRALLEATAQ 337

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           I+   LR  I    + + +  SI I +        H + + T+I  AD A+YVAK++G++
Sbjct: 338 IILERLRTPIHLGLMEVYTSCSIGIAMHP-----QHGDSLETLIRNADTAMYVAKEAGKH 392

Query: 254 RVVCFS 259
               FS
Sbjct: 393 TYRVFS 398


>gi|15600986|ref|NP_232616.1| GGDEF family protein [Vibrio cholerae O1 biovar eltor str. N16961]
 gi|121586760|ref|ZP_01676543.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121727738|ref|ZP_01680826.1| GGDEF family protein [Vibrio cholerae V52]
 gi|147672164|ref|YP_001215848.1| GGDEF family protein [Vibrio cholerae O395]
 gi|153816832|ref|ZP_01969499.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|153822645|ref|ZP_01975312.1| GGDEF family protein [Vibrio cholerae B33]
 gi|227811839|ref|YP_002811849.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|229506622|ref|ZP_04396131.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           cholerae BX 330286]
 gi|229510581|ref|ZP_04400061.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           cholerae B33]
 gi|229517288|ref|ZP_04406733.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           cholerae RC9]
 gi|229605098|ref|YP_002875802.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           cholerae MJ-1236]
 gi|254850584|ref|ZP_05239934.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255745978|ref|ZP_05419925.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           cholera CIRS 101]
 gi|262163464|ref|ZP_06031210.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           cholerae INDRE 91/1]
 gi|262167348|ref|ZP_06035057.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           cholerae RC27]
 gi|298500067|ref|ZP_07009873.1| GGDEF family protein [Vibrio cholerae MAK 757]
 gi|9657610|gb|AAF96129.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121549057|gb|EAX59094.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121629955|gb|EAX62365.1| GGDEF family protein [Vibrio cholerae V52]
 gi|126512635|gb|EAZ75229.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|126519844|gb|EAZ77067.1| GGDEF family protein [Vibrio cholerae B33]
 gi|146314547|gb|ABQ19087.1| GGDEF family protein [Vibrio cholerae O395]
 gi|227010981|gb|ACP07192.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|227014887|gb|ACP11096.1| GGDEF family protein [Vibrio cholerae O395]
 gi|229345324|gb|EEO10297.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           cholerae RC9]
 gi|229353026|gb|EEO17966.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           cholerae B33]
 gi|229356973|gb|EEO21891.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           cholerae BX 330286]
 gi|229371584|gb|ACQ62006.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           cholerae MJ-1236]
 gi|254846289|gb|EET24703.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255735732|gb|EET91130.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           cholera CIRS 101]
 gi|262024232|gb|EEY42924.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           cholerae RC27]
 gi|262028031|gb|EEY46690.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           cholerae INDRE 91/1]
 gi|297542048|gb|EFH78099.1| GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 359

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 69/134 (51%), Gaps = 12/134 (8%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM----FVGRLGGEEFA 181
           NE   I   DID+FK +ND +GH  GDKVI     Q+V +  T       + RLGG+EF 
Sbjct: 208 NESAVIAVIDIDHFKSVNDLYGHDTGDKVIT----QVVEIMNTHCRELDLLFRLGGDEFL 263

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                +S  +A ++ + +   I+ +     +     +T+S G+AE    +       RAD
Sbjct: 264 LLFENTSLTDATLVMSHIGCRIQQTHYPYHAK----VTVSVGLAEALRTDDPEQWFKRAD 319

Query: 242 QALYVAKKSGRNRV 255
           QALY +KK G+NRV
Sbjct: 320 QALYHSKKMGKNRV 333


>gi|254515426|ref|ZP_05127487.1| response regulator/sensory box/ggdef domain/eal domain protein
           [gamma proteobacterium NOR5-3]
 gi|219677669|gb|EED34034.1| response regulator/sensory box/ggdef domain/eal domain protein
           [gamma proteobacterium NOR5-3]
          Length = 660

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 87/176 (49%), Gaps = 17/176 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKV 154
           ++   +  D L+GLLN  +F + + S +E     L+I F D+D FK +ND +GH VGD++
Sbjct: 213 KLQHTAEHDPLTGLLNRGSFSAGINSLDENRMNNLAIAFVDLDQFKAVNDTWGHAVGDEL 272

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA--AILANDLRKIIENSQINISS 212
           +   + +L         V RLGG+EFA  A      E+  A+     R++  N  + I  
Sbjct: 273 LKVAALRLQRCARHSDMVARLGGDEFAIVAFNCPNDESLPALGEKIARRM--NGDVTI-D 329

Query: 213 GPSIHITISAGIA--ERCH--KEPISTIIYR----ADQALYVAKKSGRNRVVCFSD 260
           G  I +  S GIA  + C   K P      R    AD+A+YVAK+S   R   F +
Sbjct: 330 GHQIALNTSIGIAHSQWCSEPKLPDGQCAERLMSFADEAMYVAKRSRGKRFHIFQE 385


>gi|218517144|ref|ZP_03513984.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli 8C-3]
          Length = 408

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 21/176 (11%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  S  +I Q++  D L+GL N + F       I    S  ++  ++  D+D+FK IND
Sbjct: 146 ELDTSRKKIHQMAFYDSLTGLPNRTLFNERLREMIGDAASAGQRAGVMLIDMDHFKAIND 205

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDL--- 199
             GHPVGD+++  ++ ++         V RLGG+EFA     +  ++  A I +  L   
Sbjct: 206 TMGHPVGDELLRQVATRMKKGVRASDTVARLGGDEFAVLLPNVQDNDDLAQIASRMLAAF 265

Query: 200 --RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             R ++ + +I +S    I +  + G A      P   + Y AD A+Y+AK+SGR+
Sbjct: 266 GERFMLSDREIFVSCSIGISVFPNDGDA------PDDLVKY-ADSAMYLAKRSGRS 314


>gi|89055710|ref|YP_511161.1| diguanylate cyclase/phosphodiesterase [Jannaschia sp. CCS1]
 gi|88865259|gb|ABD56136.1| diguanylate cyclase/phosphodiesterase [Jannaschia sp. CCS1]
          Length = 554

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 88/172 (51%), Gaps = 17/172 (9%)

Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++ S  D L+GL N        S +I++L +     +I+F D+D FK IND  GH  GD
Sbjct: 106 VTRDSNEDPLTGLSNRRHFEANVSVWIAALRNRGAAFAILFIDLDRFKTINDTLGHEAGD 165

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILAN----DLRKIIENSQ 207
            ++  ++  L  +  +   V RLGG+EF     LG S  E + LA+    ++ K  E   
Sbjct: 166 GLLVAVASMLKRITHSSDLVARLGGDEFVILRPLGESALEISGLADEIIREMSKPFEFDG 225

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++S G S+ +     IA++  + P   ++  AD ALY AK +GR R   F+
Sbjct: 226 KSVSCGASVGV----AIADKDARNP-EEVVGDADTALYHAKSTGRARWSFFT 272


>gi|320335284|ref|YP_004171995.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
 gi|319756573|gb|ADV68330.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
          Length = 199

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 7/149 (4%)

Query: 112 LLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           LL+  AF ++L +     ++   D+D+FK +ND  GH  GD+V+  +   L         
Sbjct: 6   LLDRPAFETALDTATPA-TLAVMDLDHFKILNDTLGHAEGDRVLRTIERLLTGSLPHGST 64

Query: 172 VGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQINISSGPSIHITISAGIAER-CH 229
           V RLGG+E+AA    ++ + A IL ++ +R    N   N  S     +++S G+A R  H
Sbjct: 65  VARLGGDEYAALFPDTAPETALILMDEVIRHFHANRDPNWPST----LSLSVGLAARPAH 120

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 ++  AD ALY AK  GRNRV  +
Sbjct: 121 ASSPQDLLRAADAALYRAKVEGRNRVAIY 149


>gi|297539234|ref|YP_003675003.1| GAF sensor-containing diguanylate cyclase [Methylotenera sp. 301]
 gi|297258581|gb|ADI30426.1| diguanylate cyclase with GAF sensor [Methylotenera sp. 301]
          Length = 329

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 99/204 (48%), Gaps = 15/204 (7%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI--SQLSRIDCLSGLLNHS 116
           Y L  I V + S   +S T  L+L  +S  ++  L   Y  I    L+  D L+GL N +
Sbjct: 129 YALGTIAVVDTSPRTLSETQGLMLKDLSKLVITALESRYRAILLENLAMTDHLTGLANRA 188

Query: 117 AFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            F  +L S         +  ++ + D+D FK IND +GH  GD+V+  ++  +     T 
Sbjct: 189 RFERTLNSEIAHFRVTGKSFTVFYMDLDNFKIINDTYGHSAGDEVLVEVAHLISKQVRTE 248

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQINISSGPSIHITISAGIAER 227
               RLGG+EF    +   E    +  +  ++I++     I +++G  + I IS GIA  
Sbjct: 249 DLPARLGGDEF---GIFMREDNKGLTESLAKRIVDTVTKPITLTTGHQVSIGISIGIATY 305

Query: 228 CHK-EPISTIIYRADQALYVAKKS 250
               + + T++  ADQALY+ K++
Sbjct: 306 SDDTQTVDTLMGLADQALYIDKRN 329


>gi|163783280|ref|ZP_02178273.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881388|gb|EDP74899.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hydrogenivirga sp. 128-5-R1-1]
          Length = 425

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 85/175 (48%), Gaps = 17/175 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+  +S ID L+G+ N   F                 +SI+  DID+FK  ND  GH  G
Sbjct: 246 RLRDISFIDGLTGVANRLRFDDFFRKEWRRARRTKRPISILMLDIDFFKNYNDLLGHLEG 305

Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-N 209
           D+ +  ++  +   +      V R GGEEF      +  + A  +A  +R+ IE  +I +
Sbjct: 306 DECLKNVAKTIQSHIRADVDLVARYGGEEFVVVLPETDLKGALKVAERIRRDIEGLKIAH 365

Query: 210 ISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             S  S  +T+S G+A     +   KE    ++  AD+ALYVAKK GRNRV  +S
Sbjct: 366 PGSQVSKFVTVSIGVASIVPIDNLKKE---VLLNMADKALYVAKKRGRNRVEAYS 417


>gi|117620240|ref|YP_858643.1| GGDEF domain-containing protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561647|gb|ABK38595.1| GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 371

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 17/184 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDY 138
           +  ++ EL      +   SR+D L+G+ N +     L     +       LS+V  D+DY
Sbjct: 182 NADLVAELKAVSEHLKLTSRLDGLTGIANRAHLDYCLERAWRRCHRARAPLSLVLVDVDY 241

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           FKQ ND +GH +GD+ +  ++  L  V         R GGEEFA     +S Q A  +A 
Sbjct: 242 FKQFNDLYGHQLGDECLQQVAGLLAEVQRREDDLAARYGGEEFALLLPCTSMQGALQIAE 301

Query: 198 DLRKIIEN----SQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSG 251
           ++R  +++     Q ++ SG    ++ S G+A     +   IS +I +AD ALY AK +G
Sbjct: 302 NVRVALKDLSIPHQKSLVSG---RVSCSFGVATLVPDQSLSISELIQKADAALYQAKHNG 358

Query: 252 RNRV 255
           R+R+
Sbjct: 359 RDRI 362


>gi|120555318|ref|YP_959669.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120325167|gb|ABM19482.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 364

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 78/156 (50%), Gaps = 8/156 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N    +  L +  ++        S++  DID FK +ND++GH  GD +I  ++
Sbjct: 200 DALTSLANRREGLEQLETEYQRYLRNGRSFSVLLMDIDLFKNVNDSYGHQAGDDMIVLVA 259

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         + R GGEEF      ++  EAA  A  +R  + +  I+  +G  +  T
Sbjct: 260 RTLTDQSRKVDTIARWGGEEFLVLLPETALTEAAATAERIRSAVASQAID-CAGKRVTAT 318

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           IS G+A     E I  ++ RAD+ALY AK  GRNRV
Sbjct: 319 ISIGVACIQGSESIDRLLQRADEALYQAKTLGRNRV 354


>gi|307726144|ref|YP_003909357.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Burkholderia sp. CCGE1003]
 gi|307586669|gb|ADN60066.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Burkholderia sp. CCGE1003]
          Length = 692

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 13/166 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            +I QL+ +D L+GL N +         I +        +++F DID FK IND+ GH  
Sbjct: 253 GQILQLATLDTLTGLPNRATLTERIEHAIHARRRQRSLFAVLFMDIDGFKTINDSLGHSA 312

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND-LRKIIENSQI 208
           GD+V++  + +L+        V RLGG+EF   A   +S  +A  LA D L ++  ++  
Sbjct: 313 GDQVLSAFAQRLLQCVRAGDTVARLGGDEFVVLAEQLASRNDAGALAEDVLERMRRDTWA 372

Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           +  S P + +  S GIA      + + T++  AD A+Y AK++GR+
Sbjct: 373 D--SQP-LQVMPSIGIALFPEDGDTVETLLKHADAAMYEAKRAGRS 415


>gi|254515524|ref|ZP_05127584.1| sensory box/ggdef domain/eal domain protein [gamma proteobacterium
           NOR5-3]
 gi|219675246|gb|EED31612.1| sensory box/ggdef domain/eal domain protein [gamma proteobacterium
           NOR5-3]
          Length = 654

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 16/175 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS------YNE-KLSIVFFDIDYFKQINDNFGHPV 150
           + I + +  D L+GL N       LG        NE + +++F D+D+FK++ND+ GH  
Sbjct: 212 DTIERQALFDDLTGLPNRRLLQDRLGQALARAKRNETQAALLFLDLDFFKRVNDSLGHSA 271

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL---GSSEQEAAIL---ANDLRKIIE 204
           GD+++  +  +L           RLGG+EF A      G +E   +++      LR+ IE
Sbjct: 272 GDELLVEVGRRLSAFLRDADTAARLGGDEFVALLTDIEGGTEHVVSVVRRRGEALRRAIE 331

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            + I+I  G  IHIT+S G++        +  ++  AD A+Y AK  GRN +  F
Sbjct: 332 -APIDI-QGNEIHITVSIGVSLLPDDTNDVDDLLKHADTAMYRAKDDGRNTLRFF 384


>gi|77457563|ref|YP_347068.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1]
 gi|77381566|gb|ABA73079.1| putative GGDEF-domain membrane protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 495

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 8/164 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I   + +D L+ L N   F       +       + L+ +  D+D+FK +ND +GH  G
Sbjct: 323 KIHAQATLDSLTELPNRRGFDLLAAQALHEAHREPKPLTALLLDLDHFKVLNDTYGHMAG 382

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+   +  L         V R GGEEF      +  +    +A  +R+ +E  +    
Sbjct: 383 DQVLIGFARDLQSCLRHSDIVCRWGGEEFIVLLKDTDGETGQKIAEKIRQHVEQHEYAY- 441

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +G ++++T+S G       + + +++ RAD A+Y AK++GRNR 
Sbjct: 442 NGHTLNLTVSIGATTLQPDDTLHSLLSRADHAMYRAKQTGRNRT 485


>gi|84387357|ref|ZP_00990377.1| Intracellular signaling protein (PAS, GAF, GGDEF domains) [Vibrio
           splendidus 12B01]
 gi|84377806|gb|EAP94669.1| Intracellular signaling protein (PAS, GAF, GGDEF domains) [Vibrio
           splendidus 12B01]
          Length = 356

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 8/165 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           Y+ ++ L    CL   LN  A +  L     K ++   DID+FKQ+ND +GH +GD V+ 
Sbjct: 184 YDPLTHLPNRRCLFKTLN--AEVEQLKGSLGKGTLAVVDIDFFKQVNDTYGHQMGDVVLK 241

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKI-IENSQINIS 211
            +++ L        FV R GGEEF            E +   L  +++KI ++   + IS
Sbjct: 242 KVANVLSNNTQEGEFVARFGGEEFILWYPNKTPSCVEDKFMTLLQEMKKITLDRKPVTIS 301

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G + H  +S G  +      +  +I  AD+ LY+AK++GR++ +
Sbjct: 302 IG-ACHFELSTGDTKGERMSALDKLIKVADECLYIAKQNGRDQFI 345


>gi|110632952|ref|YP_673160.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Mesorhizobium sp. BNC1]
 gi|110283936|gb|ABG61995.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Chelativorans sp. BNC1]
          Length = 730

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 98/199 (49%), Gaps = 24/199 (12%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLS 130
           I+L LG         L  S  R   L+  D L+ L N + F       I ++ + + + +
Sbjct: 278 IALFLGRKLRRASLALHASERRARHLASHDVLTRLPNRAFFEKKLDRVIDTVQAGHGEAA 337

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSE 189
           ++F D+D FK +ND  GH  GD+++   + +L    G    V R+GG+EF    L  S  
Sbjct: 338 LLFLDLDRFKNVNDTLGHRAGDELVRETAVRLSTAIGNAGVVARIGGDEFGMVILRRSGA 397

Query: 190 QEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIA-------ERCHKEPISTIIYRAD 241
           +EAAI  ++  ++++  ++  + SG  +H+ +S G+A       ER        ++ +AD
Sbjct: 398 REAAIELSE--RLLQALKVPFVISGEPVHVGVSIGVALAPEAGSER------QDLLRKAD 449

Query: 242 QALYVAKKSGRNRVVCFSD 260
            ALY AKK GR     FS+
Sbjct: 450 IALYDAKKRGRGCYQIFSE 468


>gi|226311730|ref|YP_002771624.1| signaling protein YkoW [Brevibacillus brevis NBRC 100599]
 gi|226094678|dbj|BAH43120.1| probable signaling protein YkoW [Brevibacillus brevis NBRC 100599]
          Length = 805

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 10/163 (6%)

Query: 99  RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I+ L+  D L+GL N           I      ++++ ++F D+D+FK +ND+ GH  G
Sbjct: 373 KINYLAFHDSLTGLPNRRFVEQQLDQVIMEAQKTDQQVYVLFLDLDHFKLVNDSLGHDFG 432

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++   S +L    G    V RLGG+EF       +E+E + +AN++ + IE  Q    
Sbjct: 433 DLLLQEASLRLRECVGKKGTVYRLGGDEFMVILTDVTEREVSSMANEINETIE--QAFFI 490

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRN 253
            G  ++IT S GI+         +++ R AD A+Y AK  G+N
Sbjct: 491 HGHELYITTSIGISRYPEDGQDRSVLMRNADAAMYAAKDKGKN 533


>gi|255307409|ref|ZP_05351580.1| putative signaling protein [Clostridium difficile ATCC 43255]
          Length = 628

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 14/164 (8%)

Query: 107 DCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+ L N       L    G+ ++ +  +  DID FK  NDN+GH  GDKVI  ++D +
Sbjct: 463 DGLTKLYNRRYLEQQLDLFNGTRDKNMVAILVDIDCFKSYNDNYGHLAGDKVIVKVTDII 522

Query: 163 VVVF-GTPMFVGRLGGEEF-----AAAALGSSE-QEAAILANDLRKIIENSQI-NISSGP 214
             VF      + R GGEE      +  ++G  E     +    + K++E   I +I S  
Sbjct: 523 RSVFIDITEHIIRYGGEEILILVDSIESIGVEEIDNIELYIKRVFKLLEFEGIEHIYSKI 582

Query: 215 SIHITISAGIA-ERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
             +ITISAG++ +RCH ++ +  +I  AD+ LY +KK+GRN+ +
Sbjct: 583 KNYITISAGVSIKRCHSRKDVEILIEDADKNLYKSKKAGRNQYI 626


>gi|254458235|ref|ZP_05071661.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207085071|gb|EDZ62357.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 617

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 8/168 (4%)

Query: 99  RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++   S  D ++GL N           +       E  S++  D+D+FK +ND +GH VG
Sbjct: 439 KLKDTSLRDGMTGLYNRRFLEEVIDKIMHQATRSKETYSVLMLDVDFFKMVNDTYGHDVG 498

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+VI  +   L           R GGEEF      +S++    +A+ +         ++ 
Sbjct: 499 DRVIVEIGKVLKDNIRDADLAIRYGGEEFVVMLHNASDEGTQEVASKIHSAFAALSFDVG 558

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +G  +  T+S GI++     + I   I  AD ALYVAK +GRN++V +
Sbjct: 559 TGEMMKKTMSIGISKFPKDGDTIWKCIKFADTALYVAKTTGRNKIVHY 606


>gi|117618414|ref|YP_857472.1| PAS/GGDEF domain-containing protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559821|gb|ABK36769.1| PAS:GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 809

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 6/164 (3%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           + +L+  D L+ L N       L    E   +L+++F D+D+FK IND FGH  GD ++ 
Sbjct: 509 MRRLAFYDPLTNLPNRRLLQQRLKEAMESEAQLALLFIDLDHFKPINDTFGHETGDVLLN 568

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +++++         V RLGG+EF    L  +  EA  +A+ L + + +    I     +
Sbjct: 569 MVAERMRHCVRERDLVARLGGDEF-VILLPDTGDEALAVADHLHQSLRHP-FRIDEEQEL 626

Query: 217 HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I+ S G+A    H     T+++ ADQA+Y AK  GR RV  F+
Sbjct: 627 RISSSIGVALYPEHGTDPKTLMHHADQAMYQAKGRGRGRVCLFT 670


>gi|120553272|ref|YP_957623.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120323121|gb|ABM17436.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 318

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 9/158 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N  AF       ++    ++  L+++  D+D+FK IND  GH  GD+V+  +S
Sbjct: 159 DELTGLHNRRAFFEFGAQLLNQAVRHHTPLTLIMMDLDHFKAINDTHGHDAGDEVLRQVS 218

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R+GGEEFA     +  + A  LA  L  +++   ++   G SI ++
Sbjct: 219 ALLQARIRDCDIVARMGGEEFAVLLPETGLEMARTLAERLLGLLQELTVH-HGGQSISLS 277

Query: 220 ISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            S GI+    ++  +  ++ RAD+A+Y +K  GR+RV 
Sbjct: 278 ASFGISLLGSRDRRLEDLMCRADEAMYQSKARGRSRVT 315


>gi|330811466|ref|YP_004355928.1| response regulator, PleD/VieA family [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379574|gb|AEA70924.1| Putative response regulator, PleD/VieA family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 763

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 94/186 (50%), Gaps = 15/186 (8%)

Query: 81  LLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------I 131
           LL  I G IL   E  ++  +I+ L+R D L+GL N +  I  L               +
Sbjct: 290 LLLEIEGIILDITERKLAEEKIALLARTDGLTGLANRATMIERLHQAFAAARRGAAPFAM 349

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-Q 190
            + D+D+FK+IND  GHP+GD ++  ++ ++         V RLGG+EFA   L   E  
Sbjct: 350 FYLDLDHFKRINDTLGHPIGDLLLQEVAKRIKGCTRENDVVARLGGDEFAILQLDVHEAT 409

Query: 191 EAAILANDLRK-IIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAK 248
             A LA  +R  ++    ++   G  + I++S GIA    +     +++ ++D ALY +K
Sbjct: 410 HCAALAGKIRDTLVAPYSLD---GNDVRISVSIGIALYTPQSLSADSLMAQSDMALYRSK 466

Query: 249 KSGRNR 254
           + GRN+
Sbjct: 467 EKGRNQ 472


>gi|307721000|ref|YP_003892140.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
 gi|306979093|gb|ADN09128.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
          Length = 614

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 26/206 (12%)

Query: 71  LVIISITISLLLGYISGS----ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-- 124
           L   ++ ++++L Y + +    +LK  F +Y+        D L+GL N   FI  L S  
Sbjct: 157 LAFFTVVLTIVLLYAAKNTYEYLLKSRFQAYH--------DYLTGLGNRRYFIEHLASSV 208

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEF 180
               ++   ++  D+DYFK IND  GH VGDK++  +S +L  +       V RLGG+EF
Sbjct: 209 KENKDKYTYLLLIDLDYFKTINDTLGHDVGDKLLIEVSQRLTKLSSVHHNIVARLGGDEF 268

Query: 181 A--AAALGSSE---QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIS 234
              + A  + E    EA   +N + K I+ +        S+HI+ S G++   + +   +
Sbjct: 269 CILSDAFDTKELCLAEAEEFSNKILKTIKEAY--FIEDSSLHISASIGVSIINNPQLNAN 326

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSD 260
             +  AD A+Y AK +GR+ V+ F+D
Sbjct: 327 DFLKEADIAMYEAKHNGRDDVIIFND 352


>gi|315500134|ref|YP_004088937.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Asticcacaulis excentricus CB 48]
 gi|315418146|gb|ADU14786.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Asticcacaulis excentricus CB 48]
          Length = 707

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 16/178 (8%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
           G  L E   +  RI+QL+  D L+GL N + +       +S +  +   L++   D+D F
Sbjct: 270 GIDLTEQKAAEARIAQLAHYDPLTGLGNRTLYTHEIEQALSRVQRHGHHLALHCLDLDRF 329

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND+FGH  GD ++  + ++L +      F+ R+GG+EFA        ++A  LA  +
Sbjct: 330 KTVNDSFGHLAGDALLRQVGERLRLCVRKGDFIARMGGDEFAIIQNIERPEDARCLAERV 389

Query: 200 RKIIEN----SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +++++    + I + +G S+ I ++   A        + ++ RAD ALY  K  GRN
Sbjct: 390 IEVMKSPFDINGIRLEAGVSVGIALAPEDAADA-----NNLLSRADLALYRVKSEGRN 442


>gi|124265497|ref|YP_001019501.1| diguanylate cyclase/phosphodiesterase [Methylibium petroleiphilum
           PM1]
 gi|124258272|gb|ABM93266.1| diguanylate cyclase/phosphodiesterase [Methylibium petroleiphilum
           PM1]
          Length = 806

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 91/174 (52%), Gaps = 14/174 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L++   +   I  L+  D L+GL N  AF++ +        +  E L+++F D+D+FK++
Sbjct: 363 LRDRHAAQAHIHHLAHHDALTGLPNRLAFMAEIDQLMARAAASREALALLFIDLDHFKRV 422

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+ GH  GD+++  ++ ++  V      V R GG+EF     G    E   +A+  RK+
Sbjct: 423 NDSLGHLAGDELLKTVAQRIGAVLRASDVVARFGGDEFMVLIGGGPRLED--VADVARKL 480

Query: 203 IENSQINISS--GPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGR 252
           +   ++ + +  G SI +T S GIA     + I+   +I  AD A+Y AK  GR
Sbjct: 481 LAAIEVPLDAEVGRSISVTPSIGIA-MFPGDGITPAELIKHADTAMYRAKARGR 533


>gi|312142907|ref|YP_003994353.1| diguanylate cyclase [Halanaerobium sp. 'sapolanicus']
 gi|311903558|gb|ADQ13999.1| diguanylate cyclase [Halanaerobium sp. 'sapolanicus']
          Length = 507

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 16/167 (9%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N    + S     EK       + I+F DID FK+INDN+GH VGDKV+  ++
Sbjct: 346 DQLTGLANRDLVVKSFSDLKEKAKNRQKKIGILFLDIDNFKEINDNYGHDVGDKVLKEVA 405

Query: 160 DQLVVVFGTPMFVGRLGGEEF--AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSI 216
           D L     +   + RLGG+EF     A+ S E+   +     ++I++   +  I    + 
Sbjct: 406 DLLSSSLRSNDKLFRLGGDEFVITVTAINSMEEIKQV----AKRIVDAFKEPLIVDQSNF 461

Query: 217 HITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            I++S GI+    H + +S ++  AD A+Y AK+   +  + + D E
Sbjct: 462 FISVSLGISIYPEHGQDLSELLKNADNAMYRAKQQKED-YILYEDFE 507


>gi|307720554|ref|YP_003891694.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
 gi|306978647|gb|ADN08682.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
          Length = 411

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 75/138 (54%), Gaps = 8/138 (5%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGS 187
           ++ +  DIDYFKQ ND +GH  GD  +  ++  L      P  +V RLGGEEF      +
Sbjct: 269 VTFMMLDIDYFKQYNDTYGHVEGDYALKSVAKVLKGTLKRPGDYVFRLGGEEFGVLLSDT 328

Query: 188 SEQEAAILANDLRKIIENSQ-INISSGPSIHITISAG----IAERCHKEPISTIIYRADQ 242
            E  +A LA ++   + + + I+ SS  +  +TIS G    IA+    E +  +I RAD+
Sbjct: 329 DETNSANLAREIGDAVRDLEIIHESSTVNQFLTISVGVVCCIADDALDEEV--LISRADE 386

Query: 243 ALYVAKKSGRNRVVCFSD 260
            LY AK+ GR+R V  S+
Sbjct: 387 MLYEAKEGGRDRYVITSN 404


>gi|316935188|ref|YP_004110170.1| hemerythrin-like metal-binding domain-containing diguanylate
           cyclase [Rhodopseudomonas palustris DX-1]
 gi|315602902|gb|ADU45437.1| diguanylate cyclase with hemerythrin-like metal-binding domain
           [Rhodopseudomonas palustris DX-1]
          Length = 506

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 9/187 (4%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFD 135
           LG  +  + +EL     ++   S  D L+ + N   F +SL      G  +  LS++  D
Sbjct: 156 LGAAAAQV-RELQHQLEQVRLESMTDPLTEVGNRKFFETSLARLIAAGETSGPLSLLIID 214

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D FKQ ND  GH VGD V+   +  +         V R GG+EFA    G+  ++A +L
Sbjct: 215 LDNFKQFNDRHGHVVGDDVLRLAAATIKHTCRRDDVVCRYGGDEFAIVLPGTGLRDALLL 274

Query: 196 ANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
              +R  I   +++  S       + IS G AE    E +   + RAD  +Y AK++ R+
Sbjct: 275 GEKIRAAIAARELHRRSTHESLGRLLISIGSAEFRRGETVEDFVERADHWMYAAKQASRS 334

Query: 254 RVVCFSD 260
           R +C ++
Sbjct: 335 RSLCTAE 341


>gi|254524937|ref|ZP_05136992.1| hypothetical protein SSKA14_4077 [Stenotrophomonas sp. SKA14]
 gi|219722528|gb|EED41053.1| hypothetical protein SSKA14_4077 [Stenotrophomonas sp. SKA14]
          Length = 710

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 78/146 (53%), Gaps = 15/146 (10%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           + +++F D+D FKQ+ND +GH  GD ++  ++++   +      + RLGG+EF       
Sbjct: 300 RFAVMFMDLDGFKQVNDAYGHQAGDALLVAVAERTRQLLRPHDMLARLGGDEFVLVVRIE 359

Query: 188 SEQEAAILANDLRKIIENSQINISSGP-----SIHITISAGIAERC--HKEPISTIIYRA 240
            +++   LA   R+I++     + SGP      + +T S G+A  C  H      ++  A
Sbjct: 360 HDEDLPTLA---RRILQ----AVGSGPLLPDNELQVTASIGVAI-CPDHAASERQLMAFA 411

Query: 241 DQALYVAKKSGRNRVVCFSDIENNTC 266
           D A+Y AK+SGRN  V F+D  N++ 
Sbjct: 412 DAAMYQAKESGRNAFVLFADWMNDSA 437


>gi|254506221|ref|ZP_05118365.1| diguanylate cyclase [Vibrio parahaemolyticus 16]
 gi|219551039|gb|EED28020.1| diguanylate cyclase [Vibrio parahaemolyticus 16]
          Length = 344

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 7/161 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGDKV 154
           +R++ L+  D L+G  N  + +++     E+L+   ++  DID FK IND++GH  GD V
Sbjct: 176 DRLNSLAHQDALTGAQNRLSLVTTFDQKGEQLNGSYLLTLDIDDFKVINDSYGHAAGDDV 235

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS--SEQEAAILANDLRKIIENSQINISS 212
           +  +  +L  + G    + R+GGEEF           Q  + LA+ L+  I    I +  
Sbjct: 236 LKQVVSRLSSLVGEQN-IFRMGGEEFVLVLPNKIVKHQGLSTLAHKLQGCIVAKPI-LFQ 293

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           G  + +T SAGI +    + +   +  AD  LY+AKK+G+ 
Sbjct: 294 GNELEVTFSAGIDQYLKVKGLDKTLSNADHDLYLAKKAGKR 334


>gi|209519892|ref|ZP_03268674.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160]
 gi|209499652|gb|EDZ99725.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160]
          Length = 649

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 94/184 (51%), Gaps = 17/184 (9%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFIS--------SLGSYNEKLSIVFFDIDYFKQIND 144
           L ++     +L+R D L+GL N +            S    ++  +++  D+D FK IND
Sbjct: 202 LLLARENSHRLARQDSLTGLPNRARLSELLLERTGESRARQDQSFAVLLIDLDGFKAIND 261

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKII 203
           + GH  GD+++   + +L  V  +   VGRL G+EF A + GS + ++  +LA+ + + +
Sbjct: 262 SLGHAAGDQILQEAATRLRDVLPSGDQVGRLAGDEFVAISDGSGQLRDVRVLADRIVRTL 321

Query: 204 ENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             ++  + S   +HI  S GIA   E     P   ++  AD+ALY  K+SG++    F D
Sbjct: 322 --ARPFVLSEALVHIGASVGIALYPEHAQTGP--QLLICADRALYSVKRSGKSAFAVF-D 376

Query: 261 IENN 264
            E +
Sbjct: 377 AEKH 380


>gi|218440176|ref|YP_002378505.1| diguanylate cyclase [Cyanothece sp. PCC 7424]
 gi|218172904|gb|ACK71637.1| diguanylate cyclase [Cyanothece sp. PCC 7424]
          Length = 286

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 106/237 (44%), Gaps = 37/237 (15%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILK 91
           I FS   A + F A+I      +T  Y   +I   N S+ +   +TI+ LL         
Sbjct: 61  ILFSFLCAVLWFAADI------ITKNYPYPWIPYWNASVRLGFFLTITYLLW-------- 106

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL  +Y R   L+R D L+G+ N   F+  L         +    ++V+ D+D FK +N+
Sbjct: 107 ELKKAYERERYLARTDGLTGITNRRFFLEVLHWEVQRFRRHQRPFTLVYLDVDNFKTVNN 166

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII- 203
           +FGH  GD ++  +SD +     +   V RLGG+EFA     ++ Q A  +   L+K + 
Sbjct: 167 SFGHSRGDDLLCLISDTIKANIRSLDVVARLGGDEFALLLPETNYQAAEAVLTRLQKNLL 226

Query: 204 -----ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                E+  +  S G    + I          E I  ++   D  +Y  K +G+NR+
Sbjct: 227 ASVARESFPVGFSMGAVTFLDIP---------ESIDKMMELVDHLMYDVKNTGKNRL 274


>gi|157376469|ref|YP_001475069.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sediminis HAW-EB3]
 gi|157318843|gb|ABV37941.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sediminis HAW-EB3]
          Length = 1020

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 17/172 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS------YNEK-LSIVFFDIDYFKQINDNFGHPVGD 152
           I + +  D L+GL N    +  LG+       N+K  +++F D+DYFK++ND+ GH +GD
Sbjct: 577 IWKQANYDPLTGLPNRRMLLEYLGTELLKSDRNKKHFALMFLDLDYFKEVNDSLGHDIGD 636

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINI 210
            ++   + +L         V RLGG+EF    +A+   +    +  N L ++ E   ++ 
Sbjct: 637 LLLVETAKRLKGCIRESDVVARLGGDEFTVVLSAIQDHKGVERVAENILSRLAEPFNLDN 696

Query: 211 SSGPSIHITISAGIAERCHKEPISTI---IYRADQALYVAKKSGRNRVVCFS 259
            S       ISA I    + +  S+I   +  ADQA+Y AK+ GRNR   F+
Sbjct: 697 ESA-----YISASIGITLYPDDASSIDGLLKHADQAMYAAKEQGRNRYHYFT 743


>gi|119899139|ref|YP_934352.1| hypothetical protein azo2849 [Azoarcus sp. BH72]
 gi|119671552|emb|CAL95465.1| conserved hypothetical membrane protein [Azoarcus sp. BH72]
          Length = 620

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 11/162 (6%)

Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GL N           ++S       L+++  D+DYFK +ND++GH  GD V+  L+
Sbjct: 450 DAMTGLNNRRFLEEYMDTLVASARRRRIPLAVLVLDLDYFKVVNDSYGHDAGDAVLKALA 509

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHI 218
             L         V R GGEEF    L  ++ EAA+ +A ++R  +E  ++ + +G  +  
Sbjct: 510 GVLKRTVRASDMVIRFGGEEF-LIVLQEADAEAALKVAENIRSAVEQMRVQV-AGAVLQK 567

Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           TIS G++      +     I  AD ALY AK++GRN+VV F+
Sbjct: 568 TISIGLSMFPDDSDTFWQAIKFADVALYRAKENGRNQVVRFT 609


>gi|78355597|ref|YP_387046.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78218002|gb|ABB37351.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 595

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 14/165 (8%)

Query: 107 DCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+GL N S F+  L         + +   S+V  D+D FKQIND  GH  GD V+  +
Sbjct: 162 DPLTGLPNRSLFLEKLDARVNGGRAARDGGASVVMIDVDRFKQINDVLGHEAGDGVLRVV 221

Query: 159 SDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
           +D+L  + G    + RLGG+EF    A  G +E+  A +    ++++++     + G  +
Sbjct: 222 ADRLRGILGGNDALCRLGGDEFCLLLAGGGRAEEVLARVQQIQQRLMDSVD---TGGRRL 278

Query: 217 HITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           H+T+S G+A  R  +     ++     AL  AK++G   +  FSD
Sbjct: 279 HLTVSVGVATHRPGQNAPEDMMRNGGIALQHAKRAGGGGLEVFSD 323


>gi|86146786|ref|ZP_01065106.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Vibrio sp.
           MED222]
 gi|85835436|gb|EAQ53574.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Vibrio sp.
           MED222]
          Length = 356

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 8/165 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           Y+ ++ L    CL   LN  A +  L     K ++   DID+FKQ+ND +GH +GD V+ 
Sbjct: 184 YDPLTHLPNRRCLFKTLN--AEVEQLKGSLGKGTLAVVDIDFFKQVNDTYGHQMGDVVLK 241

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKI-IENSQINIS 211
            +++ L        FV R GGEEF            E +   L  +++KI ++   + IS
Sbjct: 242 KVANVLSHNTQEGEFVARFGGEEFILWYPNKTPSCVEDKFMTLLQEMKKITLDRKPVTIS 301

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G + H  +S G  +      +  +I  AD+ LY+AK++GR++ +
Sbjct: 302 IG-ACHFELSTGDTKGERMSALDKLIKVADECLYIAKQNGRDQFI 345


>gi|119776759|ref|YP_929499.1| signal transduction protein [Shewanella amazonensis SB2B]
 gi|119769259|gb|ABM01830.1| signal transduction protein containing a membrane domain, an EAL
           and a GGDEF domain protein [Shewanella amazonensis SB2B]
          Length = 709

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 12/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L E   S  RI QL+  D L+GL N +  +  L +         +  +++  D+D FK +
Sbjct: 254 LTERKESEARIYQLAYYDVLTGLANRTLLMERLKAAIALCERSKQIGALLIIDLDNFKIL 313

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF--AAAALGSSEQEAAILANDLR 200
           ND  GH VGD ++  ++D+L+        V RLGG+EF      LG  E+ AA+ A  + 
Sbjct: 314 NDTMGHDVGDALLKMVADRLLQAVRRCELVARLGGDEFVIVMENLGIDERGAALKAKSVG 373

Query: 201 KIIEN--SQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253
           + +    +   + +G  +  + S GIA      P +  ++ +AD A+Y AK++G+N
Sbjct: 374 QKVRGLLNDPFMLAGKQLRTSPSIGIALFAEGRPGLEELLKQADVAMYQAKEAGKN 429


>gi|330811623|ref|YP_004356085.1| diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379731|gb|AEA71081.1| Putative diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 337

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 14/174 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +L I  +   +L+  D L+ + N      +L         + E LS++  D+D FK IND
Sbjct: 169 QLQIQLDENRKLAETDALTRVANRYRLDQALPLACERAQRFREPLSLIAMDVDDFKDIND 228

Query: 145 NFGHPVGDK-VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +I  +        G  + V R GG+EF      ++  +A +LA  +R+ +
Sbjct: 229 RYGHAFGDAALIQVVQSVKRCERGGDLLV-RWGGDEFIMILPNTTLADARLLAESIRRGL 287

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +    +       IT+S G+ +R   E  + +++RADQALY +K SG+N V+C
Sbjct: 288 SD----LLPVGDFQITMSFGVVQRLEDEQHAVLLHRADQALYRSKMSGKN-VIC 336


>gi|221196783|ref|ZP_03569830.1| WspR [Burkholderia multivorans CGD2M]
 gi|221203452|ref|ZP_03576471.1| WspR [Burkholderia multivorans CGD2]
 gi|221177386|gb|EEE09814.1| WspR [Burkholderia multivorans CGD2]
 gi|221183337|gb|EEE15737.1| WspR [Burkholderia multivorans CGD2M]
          Length = 344

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 3/131 (2%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALG 186
           +LS++  D+D+FK  ND +GH  GD V+  ++  +   +  +     R GGEEFA    G
Sbjct: 205 ELSLLMIDVDHFKLYNDTYGHVSGDHVLRQVATTIAQCLRPSGDLAARFGGEEFAVVMPG 264

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQAL 244
           +S   A +L   +R  ++  ++      + H+T+S G A        P + +I  AD+AL
Sbjct: 265 TSAGAARLLGEKIRLAVDALRLEHGQSTAGHVTVSIGGASIVPAPGLPTTALIEAADRAL 324

Query: 245 YVAKKSGRNRV 255
           Y AK+ GRNRV
Sbjct: 325 YRAKRDGRNRV 335


>gi|221197349|ref|ZP_03570396.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Burkholderia multivorans CGD2M]
 gi|221204022|ref|ZP_03577040.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Burkholderia multivorans CGD2]
 gi|221176188|gb|EEE08617.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Burkholderia multivorans CGD2]
 gi|221183903|gb|EEE16303.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Burkholderia multivorans CGD2M]
          Length = 659

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 17/186 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDID 137
           SG  + E   +  R+++L+  D L+GL N  A             G    ++ I+F D+D
Sbjct: 210 SGIDITEERNAQQRLTELANTDVLTGLPNRHAISERIRTVIAQQTGDTPGQVGILFLDLD 269

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE----FAAAALGSSEQEAA 193
            FK++ND++GH  GD+++  +S  +     +   + RLGG+E    F        E  A 
Sbjct: 270 NFKRVNDHYGHITGDRLLQDVSAIINGCLPSGATLARLGGDEFLVLFEQGTRALLEATAQ 329

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           I+   LR  I    + + +  SI I +        H + + T+I  AD A+YVAK++G++
Sbjct: 330 IILERLRTPIHLGLMEVYTSCSIGIAMHP-----QHGDSLETLIRNADTAMYVAKEAGKH 384

Query: 254 RVVCFS 259
               FS
Sbjct: 385 TYRVFS 390


>gi|218670505|ref|ZP_03520176.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium etli GR56]
          Length = 471

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 82/174 (47%), Gaps = 16/174 (9%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           EL ++ +RI   S  D L+ L N      +L +         +K SI+  D+D FK IND
Sbjct: 20  ELELAKDRIEHNSLHDPLTALANRRKLDIALENLTHDGRRQRQKFSILHIDLDRFKDIND 79

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA----NDLR 200
             GH  GD ++   S  L         V R+GG+EF   A    ++E A LA     ++R
Sbjct: 80  TLGHAAGDAMLVHASKVLAKNVRGSDLVARIGGDEFVILAGDVGDKEMAELATRIVEEMR 139

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + I+    +   G SI I ++ GI     K     ++  AD ALY AK +GRNR
Sbjct: 140 QPIDFQGFSCRCGVSIGIALANGIHIDARK-----VLINADIALYRAKSTGRNR 188


>gi|163748444|ref|ZP_02155698.1| sensory box protein [Shewanella benthica KT99]
 gi|161332022|gb|EDQ02699.1| sensory box protein [Shewanella benthica KT99]
          Length = 819

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 80/163 (49%), Gaps = 10/163 (6%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N  A IS +            +L+ VF D+D+FK IND+FGH  GDK++  L+
Sbjct: 398 DPLTQLPNRMALISLIEQDIRHAEVQQGQLATVFIDVDFFKHINDSFGHLAGDKILVELA 457

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINISSGPSIHI 218
            +L  + G    + R+GG+EF          E   LA + LRK  E   I I     I +
Sbjct: 458 GRLTSLKGAEDTLARIGGDEFVVLLPQVEGNEELTLALSKLRKAFEQPFI-IDDNEPIRL 516

Query: 219 TISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSD 260
           T S G++   H    S T++  AD A + AK  GRN    +++
Sbjct: 517 TASMGVSVFPHDGKDSYTLLRNADSAKHRAKLDGRNSYAFYTE 559


>gi|110679010|ref|YP_682017.1| GGDEF/EAL domain-containing protein [Roseobacter denitrificans OCh
           114]
 gi|109455126|gb|ABG31331.1| GGDEF/EAL domain protein [Roseobacter denitrificans OCh 114]
          Length = 619

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 20/179 (11%)

Query: 99  RISQLSRI-------DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           R+ QL++        D L+GL N   F       I +L  +  + ++++ D+D FK +ND
Sbjct: 161 RLHQLAKSVAKDANEDALTGLSNRRHFEVELKTWIENLKKHGTEFAVIYIDLDRFKFVND 220

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKII 203
             GH  GD+++  ++D L  + G    V RLGG+EF     L  S    + LA+D   I+
Sbjct: 221 TLGHDAGDRLLVSVADMLRDLTGDCDLVARLGGDEFVILRPLAQSALNISSLADD---IV 277

Query: 204 ENSQINIS-SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              Q   +  G S   + S G+A    H E    ++  AD+ALY AK  G+ R   F++
Sbjct: 278 GTMQAPFACDGKSTACSASVGVAIANKHMEHPEQVVADADEALYHAKSQGKGRWSFFTE 336


>gi|24373074|ref|NP_717117.1| sensory box protein [Shewanella oneidensis MR-1]
 gi|24347254|gb|AAN54561.1|AE015596_1 sensory box protein [Shewanella oneidensis MR-1]
          Length = 998

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 13/174 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S + I + +  D L+GL N        SA I +        +++F D+DYFK++ND  GH
Sbjct: 564 SEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRNRNHFALMFLDLDYFKEVNDTLGH 623

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA--ILANDLRKIIENS 206
            +GD ++   + +L         V RLGG+EF       ++ +    +  + LR+I E  
Sbjct: 624 AMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMADHKGIERVAEHILRRIAEPY 683

Query: 207 QINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
            +      + HI+ S GI       P I  ++  ADQA+Y AK  GRNR   F+
Sbjct: 684 YL---GEETTHISASIGITLYPDDSPSIEGLLKHADQAMYAAKDQGRNRFNYFT 734


>gi|51245404|ref|YP_065288.1| hypothetical protein DP1552 [Desulfotalea psychrophila LSv54]
 gi|50876441|emb|CAG36281.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 330

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 93/199 (46%), Gaps = 17/199 (8%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------- 124
           VII  T +LL      +I ++L I    + + +  D L G  N   F   L +       
Sbjct: 115 VIIYDTTALLEA--KATINEQLDI----VKKQASTDPLLGCYNRKMFNDLLATEVMRANR 168

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           +N   S++  DID FK +ND +GH VGD+V+  LS              R GGEEF    
Sbjct: 169 HNHPFSLIMIDIDNFKSVNDTYGHLVGDEVLKGLSSLTAKSIRESDLFARWGGEEFIILL 228

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +    AA++A  +R  I     N  +G +   T S G++E         +I  AD+AL
Sbjct: 229 PETYLTGAAVVAEKIRLNI----ANYDNGTAGKRTCSFGVSEFSIGTNPEILINNADKAL 284

Query: 245 YVAKKSGRNRVVCFSDIEN 263
           Y AK +G+N+V+ + D +N
Sbjct: 285 YAAKGNGKNQVMLYRDEQN 303


>gi|17228714|ref|NP_485262.1| hypothetical protein all1219 [Nostoc sp. PCC 7120]
 gi|17130566|dbj|BAB73176.1| all1219 [Nostoc sp. PCC 7120]
          Length = 737

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 15/174 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL +  + +  L+  D L+GL N   F   L          N  L ++F D+D FKQ+ND
Sbjct: 557 ELKLKEDHLRYLAYHDALTGLPNRKYFAEQLYESINWAKDNNLSLGLLFIDLDGFKQVND 616

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKI 202
           + GH +GD+++  ++ +L         V RLGG+EF     A+ + +  A +    L  I
Sbjct: 617 SLGHEMGDRLLVVIAQRLSNSLRASDTVARLGGDEFTVILQAIPNVQVAAKVAEKILANI 676

Query: 203 IENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            E   +N   G +  +++S GI+       +P  T++ +AD A+Y AK  G+NR
Sbjct: 677 TEPIVLN---GCTAKVSVSIGISIYPETSLDP-DTLLKKADAAMYRAKHLGKNR 726


>gi|84515194|ref|ZP_01002557.1| hypothetical protein SKA53_13258 [Loktanella vestfoldensis SKA53]
 gi|84511353|gb|EAQ07807.1| hypothetical protein SKA53_13258 [Loktanella vestfoldensis SKA53]
          Length = 597

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 89/174 (51%), Gaps = 14/174 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNF 146
           +EL  +   + Q +  D L+ L N  AF  +L    G+ + +++++  D+D FK +ND  
Sbjct: 144 RELDEARQALEQAAYHDPLTELPNRRAFERALEHCLGAADGRVALLHLDLDRFKWVNDTL 203

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF-----AAAALGSSEQEAAILANDLRK 201
           GH  GD V+   + ++    G      R+GG+EF        +   + Q    +   L +
Sbjct: 204 GHQSGDAVLVTAAQRISQAVGNRGQTYRVGGDEFMVLLTQGISANLAHQTGTAIVKALTR 263

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I+ +Q  ++ G  I I I+ G+A    ++  +T+I  AD ALY AK++GRN+V
Sbjct: 264 PIDLAQRQVTIG--ISIGIATGVA---GQDTAATVIAHADVALYEAKRNGRNQV 312


>gi|169342598|ref|ZP_02863650.1| sensory box protein/histidinol phosphate phosphatase family protein
           [Clostridium perfringens C str. JGS1495]
 gi|169299370|gb|EDS81437.1| sensory box protein/histidinol phosphate phosphatase family protein
           [Clostridium perfringens C str. JGS1495]
          Length = 624

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 20/170 (11%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           KE+ I  +R++     D L+ + N   F  S           ++K +++F D+D+FK+IN
Sbjct: 182 KEMEIELDRMANY---DELTNIPNMRLFFKSFRNTINESKKMDKKFAVLFIDLDWFKEIN 238

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILAND 198
           DN+GH VGD+V+     ++         +GR+GG+EFAA     S++E        + N 
Sbjct: 239 DNYGHDVGDEVLVCAVKRIYKCLRKGDILGRIGGDEFAAILKDISDREEIEKIVKDIQNS 298

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           LRK I+   +  +   SI ITI     E+     I  ++  +D+A+Y  K
Sbjct: 299 LRKRIKIGDVTCNIDSSIGITIFPEDGEK-----IEVLMRNSDKAMYKVK 343


>gi|113970424|ref|YP_734217.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella sp. MR-4]
 gi|114047383|ref|YP_737933.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella sp. MR-7]
 gi|113885108|gb|ABI39160.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella sp. MR-4]
 gi|113888825|gb|ABI42876.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella sp. MR-7]
          Length = 544

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 8/158 (5%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLNH+  + +           N  + I   D+D+FKQ+ND +GH  GDKV+   +
Sbjct: 384 DSLTGLLNHTQILVAARRCFNLAKRINSSVCIAMLDLDHFKQVNDTYGHSGGDKVLLAFA 443

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L        F+GR GGEEF           A    N +R+   +  + +       +T
Sbjct: 444 HLLQQSLRPVDFMGRYGGEEFMLVLPDLPAPLAIAKLNAIRESFSHI-VFVEDAAEFKVT 502

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A           +  AD+ LY AK++GRNR++ 
Sbjct: 503 LSGGLAFSAECGEFQDCLLLADKNLYEAKRTGRNRLIT 540


>gi|117921925|ref|YP_871117.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117614257|gb|ABK49711.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 302

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 77/169 (45%), Gaps = 9/169 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ QLS  D L+GL N       L         +    SI+  D+D+ K+IND  GH  G
Sbjct: 134 QLRQLSDTDQLTGLYNRRRLDRDLQLLFDTFSRHRIPASILVLDLDHLKRINDQLGHQAG 193

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+VI  ++D     F       R GG+EF  A  G    +A + A  L      +   +S
Sbjct: 194 DRVIMAVADTCQQQFRKTDSAYRFGGDEFVIALPGVDHDQAIVFAEYLCDCCFKALQQLS 253

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               +  T+S G+A      +     + RAD ALY AK+ G+NRV+  S
Sbjct: 254 V-KGLFATVSIGVASIEAGDKSYEDTLKRADAALYQAKRDGKNRVIANS 301


>gi|329295713|ref|ZP_08253049.1| diguanylate cyclase [Plautia stali symbiont]
          Length = 337

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 2/125 (1%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D+FK +ND++GH  GD ++A +S  L    G      R GG+E       +S++
Sbjct: 204 LLLLDVDHFKVVNDSWGHEAGDFLLAEISALLRNYVGLQDIPARFGGDELGVIVHQASDE 263

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
               LA  L++ I  SQ+ + +      ++S GIA     E +S  +  AD+ALY  K++
Sbjct: 264 SVVELAERLKEKI--SQLRLPASAEFRCSVSIGIAPAVSAESLSDWLSHADEALYEVKRA 321

Query: 251 GRNRV 255
           GRN V
Sbjct: 322 GRNGV 326


>gi|296534761|ref|ZP_06897129.1| exopolyphosphatase [Roseomonas cervicalis ATCC 49957]
 gi|296264912|gb|EFH11169.1| exopolyphosphatase [Roseomonas cervicalis ATCC 49957]
          Length = 686

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 12/169 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHP 149
           EL  +  +   L+  D L+GL N ++   +     +   ++++F D+D FK +ND FGHP
Sbjct: 242 ELKEAERKADFLASHDVLTGLPNRASLHPAFARLRQGGGVALMFIDLDGFKHVNDAFGHP 301

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF-----AAAALGSSEQEAAILANDLRKIIE 204
           VGD+++  ++ +L  +      V RLGG+EF          G  E  A  L   L   IE
Sbjct: 302 VGDRLLVEVARRLRGLLRAEDEVLRLGGDEFLLLLRRHGQPGEVESVAERLREALSLPIE 361

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +   +   PSI I++        H   +  +  RAD ALY AK +GR+
Sbjct: 362 TAGQRLQVTPSIGISLCPE-----HGTDVDELAKRADLALYEAKAAGRD 405


>gi|328472979|gb|EGF43827.1| GGDEF family protein [Vibrio parahaemolyticus 10329]
          Length = 381

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 82/172 (47%), Gaps = 9/172 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           +L  +  ++  LS  D L+ L N  + I +L    +        L  +  D DYFKQ+ND
Sbjct: 194 QLLTANKQLEALSLTDSLTQLPNRRSAIKTLKKLWDDTEHKTLPLVCIMIDADYFKQVND 253

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD V+  L+  L   F +   V RLGG+EF      +       +A  +RK + 
Sbjct: 254 TCGHEAGDLVLIELAQALKYHFRSDDIVCRLGGDEFFVICPDTGLDGGLYVAEMVRKQVS 313

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV 255
              +     P    +IS G+AER       T + R AD+++Y+AK+ G+NRV
Sbjct: 314 QMLVPTCYEP-WRGSISVGVAERTENMNTYTDLIRAADESVYLAKQEGKNRV 364


>gi|160877438|ref|YP_001556754.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica OS195]
 gi|160862960|gb|ABX51494.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica OS195]
 gi|315269640|gb|ADT96493.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica OS678]
          Length = 310

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 80/164 (48%), Gaps = 16/164 (9%)

Query: 106 IDCLSGLLNHSAFISSLGS------YNE-KLSIVFFDIDYFKQINDNFGHPVGDK----V 154
           +D L+G+ N   F   L         NE  LS+V  D+D+FK+ ND +GH  GD+    V
Sbjct: 146 LDSLTGVANRRQFEQRLPEIWKHCCRNELALSVVMLDVDFFKRFNDRYGHQEGDQCLRHV 205

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
              +SD L+       FV R GGEEF      +    A   A  +   ++   +      
Sbjct: 206 AKAISDSLLRATD---FVARYGGEEFICILPETKLAGAIHTAQKIVNAVQALHLEHLESS 262

Query: 215 SIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
              +TISAG+A    K  ++   +I  ADQ LY+AK+SGRN+VV
Sbjct: 263 FQEVTISAGVASVLPKSDLTWQALIETADQQLYLAKESGRNQVV 306


>gi|83311851|ref|YP_422115.1| GGDEF domain-containing protein [Magnetospirillum magneticum AMB-1]
 gi|82946692|dbj|BAE51556.1| FOG: GGDEF domain [Magnetospirillum magneticum AMB-1]
          Length = 419

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 83/183 (45%), Gaps = 26/183 (14%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------------------LSIVFFDIDYFK 140
           +S +S++  +S L++ S+      +YN +                   LS+ F D+D FK
Sbjct: 231 LSGMSQLHFMSQLVDQSSHDGLTRAYNRRVGEEMLVQQFVTAARSKIPLSLAFVDLDNFK 290

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD  +   S  L  V      + R GGEEF A    +    AAI    LR
Sbjct: 291 SINDKYGHEEGDNALRIASASLRKVLRRGDILIRWGGEEFIAVMPNTDPAGAAIAIARLR 350

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCF 258
                  I     P   +T S G+AER     E  + ++ RAD  +Y AK+SG++RV+  
Sbjct: 351 S--AGLGIRPDGRP---LTASIGVAERLTDGIESWNELVERADHRMYAAKQSGKDRVIGC 405

Query: 259 SDI 261
            D+
Sbjct: 406 GDL 408


>gi|109899742|ref|YP_662997.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas atlantica T6c]
 gi|109702023|gb|ABG41943.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas atlantica T6c]
          Length = 684

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 21/179 (11%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQIN 143
           Y S ++L   F+S +R+SQ+               +       EK +++F D+D FK++N
Sbjct: 260 YDSLTLLPNRFLSLDRLSQM---------------LKEAQRNEEKAALLFLDLDDFKKVN 304

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRK 201
           D+ GH VGDK++   +++L +       VGRLGG+EF     AL        +  N LR 
Sbjct: 305 DSLGHEVGDKLLVEAANKLTLALRKADTVGRLGGDEFIVLLRALADDNDAKEVAENLLRV 364

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +   I+   G  + +T+S GI          S ++  AD A+Y +K SGRN    F+
Sbjct: 365 FRDPFLID---GKELILTLSIGIVTYPENGSSASDLLRHADAAMYQSKLSGRNTYSFFT 420


>gi|320531046|ref|ZP_08032076.1| diguanylate cyclase domain protein [Selenomonas artemidis F0399]
 gi|320136712|gb|EFW28664.1| diguanylate cyclase domain protein [Selenomonas artemidis F0399]
          Length = 573

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 18/160 (11%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           YNR+      D  S L N   F         K S   FD+D+FK +ND  GH  GD V+ 
Sbjct: 422 YNRLQLQKSFDAFSALANERGF---------KFSFAIFDVDHFKSVNDTKGHLEGDNVLK 472

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++  +           R GG+EF   AL    +  A    +LR+ +E +          
Sbjct: 473 KIARTVHDEIDRRHVFIRYGGDEFILLALHYDLETMAAFCEELRRKLEAALAG------- 525

Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +T+S G++     K+ +  +I RAD+ALYV+K+ GRN V
Sbjct: 526 -VTMSFGVSTWHGDKDRLRALIDRADRALYVSKEKGRNAV 564


>gi|319935376|ref|ZP_08009813.1| hypothetical protein HMPREF9488_00644 [Coprobacillus sp. 29_1]
 gi|319809592|gb|EFW06005.1| hypothetical protein HMPREF9488_00644 [Coprobacillus sp. 29_1]
          Length = 309

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 90/171 (52%), Gaps = 7/171 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--EKLSIVFFDIDYFKQINDNFGHP 149
           E F+   ++S  S  D L+GL N   F      ++  +++SI++ D+D+FK +ND +GH 
Sbjct: 140 EAFLLEQQLSNNSHTDFLTGLYNRRYFYEYYSEHHSFDQISILYVDLDHFKIVNDTYGHQ 199

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQI 208
           +GD+V+   +  L  +F     + RLGG+EF     G  S+QE     N+L  II   + 
Sbjct: 200 IGDEVLKISAQILHKLFPNDT-ITRLGGDEFLVLKYGIISKQELIEQGNNL--IIALQEQ 256

Query: 209 NISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCF 258
              S    +++ S GI+     + I   +I  +D ALY AK++GR++   F
Sbjct: 257 FKKSRYYYNLSASVGISYTTDNQKIVDELIKESDTALYEAKQTGRSKCCIF 307


>gi|297585550|ref|YP_003701330.1| diguanylate cyclase [Bacillus selenitireducens MLS10]
 gi|297144007|gb|ADI00765.1| diguanylate cyclase [Bacillus selenitireducens MLS10]
          Length = 548

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 13/162 (8%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+G+ N   FI      +E+     S++  D+D+FK++ND +GH  GD V+   +  L
Sbjct: 380 DYLTGIANRRHFIDLYQKRHEQDHGSGSLLLLDLDHFKRVNDTYGHQTGDHVLRHFA-SL 438

Query: 163 VVVFGTPMFVGRLGGEEFA---AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           +  F    F GR+GGEEF         ++ ++A +  + LR   +N  +  +    I   
Sbjct: 439 LESFFRDGFCGRIGGEEFGVYLPLTCDAAVEKARMFQDYLR---DNPYVT-TDKERIFTP 494

Query: 220 ISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSD 260
           +S G+ E     P    +YR AD+A+Y+AK++GRN+VVC  D
Sbjct: 495 VSTGVTEISADAPDFETVYRQADEAMYLAKENGRNQVVCHRD 536


>gi|258620971|ref|ZP_05716005.1| GGDEF family protein [Vibrio mimicus VM573]
 gi|258586359|gb|EEW11074.1| GGDEF family protein [Vibrio mimicus VM573]
          Length = 505

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 108/241 (44%), Gaps = 20/241 (8%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVE----NLSLVIISITISLLLGYISGSI--- 89
           +F ++V+++ N+++    + P      +L +       +   S  IS  +   + +I   
Sbjct: 265 LFFSSVMYVVNLWVVVTLIKPITAANQVLQQFKTSGGKMPDASTFISAEMKEFASTINHI 324

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQIND 144
           + +L  S   +   S  D L+ + N       L  Y        L +   DIDYFK  ND
Sbjct: 325 VTQLDESQQVLRWQSEHDPLTRISNRRYLEKQLKGYLSDRPCRYLVLYLIDIDYFKPFND 384

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KI 202
           NFGH  GD+ +  ++  L  + F     V R GGEEF       SE +A   A  +  K+
Sbjct: 385 NFGHLAGDEALCSVAQALQAIEFDGEKIVTRFGGEEFCVVLASDSELDAEQFAQQIHTKV 444

Query: 203 IENSQINISSGPSIHITISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            E +  N       ++T+S G    I+ R   +   ++ ++AD ALY AK+SGRNR V  
Sbjct: 445 AELAIANPQDSDFQYLTVSIGGVYAISPRM--DAYLSLFHQADMALYEAKESGRNRYVVR 502

Query: 259 S 259
           S
Sbjct: 503 S 503


>gi|268680792|ref|YP_003305223.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618823|gb|ACZ13188.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 304

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 85/177 (48%), Gaps = 13/177 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           E  I+ N I  LS++D L+ L N+ AF   L     +       L++   DIDYFK IND
Sbjct: 126 ERKIAENAILNLSKVDGLTKLPNYRAFSQFLSHEWRRAMRTHTPLTMAMIDIDYFKYIND 185

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAI--LANDLRK 201
            +GH  GD+ +  ++  L      P     R GGEEF    LG +  E A+  +   L K
Sbjct: 186 TYGHLKGDEYLRKIAHMLQRTIHRPSDLCARYGGEEF-VIILGDTPLEKALGMMQTCLEK 244

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
            I     N  S     +T+S G+     K  ++    I +AD+ LY+AKK GRN++ 
Sbjct: 245 TIALRLPNPKSPIMPILTLSIGVVSVYPKPDMNEKAFIQKADELLYLAKKQGRNQLA 301


>gi|220923410|ref|YP_002498712.1| PAS/PAC and MHYT sensor-containing diguanylate
           cyclase/phosphodiesterase [Methylobacterium nodulans ORS
           2060]
 gi|219948017|gb|ACL58409.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Methylobacterium nodulans ORS 2060]
          Length = 794

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 9/171 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           L+    +  RI  L+  D L+GL N ++F   L        +   KL+++  D+D FK++
Sbjct: 350 LRARRQAEGRIQFLAHHDALTGLANRTSFTQRLDLELKLAEATGRKLAVLCLDLDRFKEV 409

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH  GD ++  ++  +  + G    + RLGG+EFA  A       A  LA  + + 
Sbjct: 410 NDLFGHAAGDAMLVNVARVVTGILGETQMMARLGGDEFAVLAACDHAITAGHLAERILEA 469

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           + +   + ++GP +  +I   +      E    ++  AD ALY AK  GR 
Sbjct: 470 LRSENAD-AAGPLVATSIGIALYPDDASE-RDVLLSHADTALYRAKSEGRG 518


>gi|114705189|ref|ZP_01438097.1| GGDEF family protein [Fulvimarina pelagi HTCC2506]
 gi|114539974|gb|EAU43094.1| GGDEF family protein [Fulvimarina pelagi HTCC2506]
          Length = 684

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 76/155 (49%), Gaps = 8/155 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N   F   L     K        S++  D+D FK +ND  GH  GD V+  ++
Sbjct: 258 DELTGVPNRRKFSEILADRCAKTRDTGAEFSLIMIDLDRFKPVNDTLGHTTGDAVLKRVA 317

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           ++L  V     F+ RLGG+EFA  ALGS+   + +L    R I   S+  I +G  I + 
Sbjct: 318 NRLEHVIRASDFLARLGGDEFAIIALGSTGDRSNVLRLCDRIIDVLSRPFIINGHVIELG 377

Query: 220 ISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
            S G+A    H      +   AD ALY AK +GR+
Sbjct: 378 ASLGVAIAPAHGTTADDLTQSADIALYAAKDAGRS 412


>gi|71905872|ref|YP_283459.1| GGDEF [Dechloromonas aromatica RCB]
 gi|71845493|gb|AAZ44989.1| GGDEF protein [Dechloromonas aromatica RCB]
          Length = 355

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 92/194 (47%), Gaps = 31/194 (15%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISS-------LG--------------SYNEKLS 130
           E+F +Y  +  +S+ D L+GL N  A  SS       LG              S  E   
Sbjct: 152 EVFSNYYALLDISQRDRLTGLFNRQALESSFDRIWRALGRPDHFAERENGRRSSPGENYW 211

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +   DID+FK IND FGH VGD+++   S  ++  F     + R GGEEF A        
Sbjct: 212 LAVIDIDHFKSINDRFGHMVGDEILLLASRLMITTFRGSDLLYRYGGEEFVAII------ 265

Query: 191 EAAILANDLRKIIENSQINISSG--PSI-HITISAGIAERCHKEPISTIIYRADQALYVA 247
            AA  A   R + E  ++ I +   P I  +T+S G ++         ++ RAD++LY A
Sbjct: 266 -AAENAAIARNVFERVRLAIEAHVFPRIDKLTVSIGYSQVSLDILPVEVLSRADRSLYQA 324

Query: 248 KKSGRNRVVCFSDI 261
           K+ GRNRV  + ++
Sbjct: 325 KQDGRNRVYAYQEL 338


>gi|288917003|ref|ZP_06411374.1| serine/threonine protein kinase [Frankia sp. EUN1f]
 gi|288351543|gb|EFC85749.1| serine/threonine protein kinase [Frankia sp. EUN1f]
          Length = 1661

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 81/172 (47%), Gaps = 13/172 (7%)

Query: 99   RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
            R+SQLS  D L+GL N       LGS  ++       L++   DID+FK  ND++GH  G
Sbjct: 1491 RLSQLSVTDPLTGLANRRRLEDVLGSEWDRSRQQHVPLALAMVDIDHFKSYNDHYGHAAG 1550

Query: 152  DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            D+ +  ++  L    G      R GGEEFA     + +  A   A  L   +  ++I   
Sbjct: 1551 DRCLQRVAGCLATNVGDTELAARYGGEEFAIVMPDADQITAGERARCLCAAV--ARIAEP 1608

Query: 212  SGPSIH--ITISAGIAERCHKEPISTI--IYRADQALYVAKKSGRNRVVCFS 259
              P+    +T+S G+A          I  +  AD ALY AK++GR RV   S
Sbjct: 1609 HAPARQRIVTVSVGVASVVPDRESHAIRLVELADSALYQAKRAGRGRVCTAS 1660


>gi|256822275|ref|YP_003146238.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Kangiella koreensis DSM 16069]
 gi|256795814|gb|ACV26470.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Kangiella koreensis DSM 16069]
          Length = 861

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 92/183 (50%), Gaps = 23/183 (12%)

Query: 98  NRISQLSRIDCLSGL---------LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
            +I  +++ D L+GL         +N S  +S    +N  L  +F D+D+FK IND+ GH
Sbjct: 426 QQIQHMAQHDSLTGLPNRLLLNDRINQSLALSLRHHHNGAL--LFIDLDFFKNINDSLGH 483

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF--AAAALGSSEQEAAILANDLRK----- 201
             GDK++  ++ +L     +   V RLGG+EF    + L   E EA + A  + K     
Sbjct: 484 MTGDKLLIEVAKRLEDNVRSGDTVARLGGDEFIIQLSELSDVEAEAELDAITVAKKLIQT 543

Query: 202 IIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF-S 259
           + +  QIN   G S+HIT S G+       +    I+ RAD A+Y AK  GRN    F S
Sbjct: 544 LTQEFQIN---GQSLHITASIGVLVYPRDADSHELIMQRADTAMYHAKAKGRNGYAVFKS 600

Query: 260 DIE 262
           D+E
Sbjct: 601 DME 603


>gi|225571248|ref|ZP_03780246.1| hypothetical protein CLOHYLEM_07337 [Clostridium hylemonae DSM
           15053]
 gi|225160079|gb|EEG72698.1| hypothetical protein CLOHYLEM_07337 [Clostridium hylemonae DSM
           15053]
          Length = 639

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 79/156 (50%), Gaps = 11/156 (7%)

Query: 105 RIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           R+D L+ + N +A    I    + + K  +   D+D FKQIND +GH  GDK +A +   
Sbjct: 480 RLDGLTEIYNKAAGEEIIRRKMAKSRKGLLYILDVDNFKQINDQYGHCQGDKALAHIGGL 539

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITI 220
           L   F +   V R+GG+EF A   G+ + + AA  A D+ K +E      S      IT+
Sbjct: 540 LKSKFRSDDIVCRIGGDEFVAYMDGTVNRKAAAKKAEDIFKALE----ECSQEMDFEITV 595

Query: 221 SAGIAERC--HKEPISTIIYRADQALYVAKKSGRNR 254
           S GIA  C  H      +   AD+A+Y  KK G+N+
Sbjct: 596 SIGIAA-CPEHGSTYEELFNAADKAMYEGKKHGKNQ 630


>gi|116327781|ref|YP_797501.1| two-component response regulator - (cyclic diguanylate (c-diGMP)
           effector molecule) [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116120525|gb|ABJ78568.1| Two-component response regulator - (cyclic diguanylate (c-diGMP)
           effector molecule) [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 409

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 11/167 (6%)

Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I ++S++D L+ L N          F+     Y   L+++  D+DY K+IND++GH  GD
Sbjct: 223 IEKISKVDELTKLYNRRYLIEQFELFLKRAQRYRFSLAMIILDMDYLKEINDSYGHLAGD 282

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN--I 210
             +  +SD +           R+GG+EF        + +   L   LR  +   +++   
Sbjct: 283 LALRTISDVMKQRVRATDICSRIGGDEFCILLDAIKKDDFVQLCEKLRMEVAEKELSYRT 342

Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
            SG  + I++S G       E  S   I +  D ALY +KK GRNRV
Sbjct: 343 PSGDPVKISVSIGACILSPMEEFSFDDIYHSIDSALYESKKKGRNRV 389


>gi|328949045|ref|YP_004366382.1| diguanylate cyclase [Treponema succinifaciens DSM 2489]
 gi|328449369|gb|AEB15085.1| diguanylate cyclase [Treponema succinifaciens DSM 2489]
          Length = 656

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 13/171 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFIS--------SLGSYNEKLSIVFFDIDYFKQ 141
           LK+L   YN+I  +S  D L+GLLN   FIS        ++ S    L ++F DID  K+
Sbjct: 479 LKKLEKDYNKICAVSVTDELTGLLNRRGFISISSRILETAMNSGQSGL-VLFGDIDGLKK 537

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH  GD+ I   +  L   F +   + RLGG+EFA  A G +++  + L   L+ 
Sbjct: 538 INDTHGHAAGDRAIKNEAALLKKTFRSSDAIARLGGDEFAILAAGLNQENFSKLKERLQ- 596

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKS 250
            +   + N +SG    ++IS G A    +    I++++  AD  LY  K+ 
Sbjct: 597 -VYCDEYNKNSGEPFTLSISIGSAPFGGQSGYDINSLLEYADSVLYKEKQK 646


>gi|289551394|ref|YP_003472298.1| diguanylate-cyclase (GGDEF) domain-containing hypothetical protein
           [Staphylococcus lugdunensis HKU09-01]
 gi|315658900|ref|ZP_07911767.1| GGDEF domain protein [Staphylococcus lugdunensis M23590]
 gi|289180925|gb|ADC88170.1| diguanylate-cyclase (GGDEF) domain-containing hypothetical protein
           [Staphylococcus lugdunensis HKU09-01]
 gi|315496024|gb|EFU84352.1| GGDEF domain protein [Staphylococcus lugdunensis M23590]
          Length = 357

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 11/169 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
           NR     + D L+GL N   F   L         ++E L+++  DID FK +ND++ H  
Sbjct: 183 NRYENEDKYDYLTGLGNVKEFDRHLNHISQQAEEHHESLALLLIDIDGFKDVNDSYSHKS 242

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  +S  L         + R GGEEF+      S  ++  LA ++R  +E S  ++
Sbjct: 243 GDAVLKQMSQLLKNYVPKKFKIFRNGGEEFSVVIRDYSLDQSVKLAENIRLGVEKSSFHL 302

Query: 211 SSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +   I +++S G+    +  HK     +   AD  ++VAK  GRN+V+
Sbjct: 303 PNKEVIKLSVSIGVGYLTKDDHKSQ-RKVFKDADDMVHVAKNEGRNQVM 350


>gi|217970398|ref|YP_002355632.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
 gi|217507725|gb|ACK54736.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
          Length = 639

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 85/173 (49%), Gaps = 22/173 (12%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL--GSYNEKL-----SIVFFDIDYFKQINDNFGHPVGD 152
           I  L+ +D L+ L N    +  L  G  N +      +++F DID+FK++ND +GH  GD
Sbjct: 466 IRNLAFVDTLTQLPNRRFLLDRLRQGLANARRHGRHGALLFIDIDHFKRVNDTYGHEAGD 525

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEF-------AAAALGSSEQEAAILANDLRKIIEN 205
           +++  ++ +L  V      V RLGG+EF         A   + E+ A I  N L  + E 
Sbjct: 526 QLLCEIAARLRQVVREGDTVARLGGDEFVVMLEDLGDATAEAGEKAALIAGNILAALNEP 585

Query: 206 SQINI---SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             I      S PSI I    G  +R  +     ++ RAD+A+Y AK  GRNR+
Sbjct: 586 YAIGAVRHHSTPSIGIACFDGGEQRAEE-----LLRRADEAMYRAKAGGRNRL 633


>gi|221210772|ref|ZP_03583752.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Burkholderia multivorans CGD1]
 gi|221169728|gb|EEE02195.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Burkholderia multivorans CGD1]
          Length = 659

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 17/186 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDID 137
           SG  + E   +  R+++L+  D L+GL N  A             G    ++ I+F D+D
Sbjct: 210 SGIDITEERNAQQRLTELANTDVLTGLPNRHAISERIRTVIAQQTGDTPGQVGILFLDLD 269

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE----FAAAALGSSEQEAA 193
            FK++ND++GH  GD+++  +S  +     +   + RLGG+E    F        E  A 
Sbjct: 270 NFKRVNDHYGHITGDRLLQDVSAIINGCLPSGATLARLGGDEFLVLFEQGTRALLEATAQ 329

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           I+   LR  I    + + +  SI I +        H + + T+I  AD A+YVAK++G++
Sbjct: 330 IILERLRTPIHLGLMEVYTSCSIGIAMHP-----QHGDSLETLIRNADTAMYVAKEAGKH 384

Query: 254 RVVCFS 259
               FS
Sbjct: 385 TYRVFS 390


>gi|221135144|ref|ZP_03561447.1| diguanylate cyclase with PAS/PAC and GAF sensors [Glaciecola sp.
           HTCC2999]
          Length = 667

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 81/167 (48%), Gaps = 12/167 (7%)

Query: 103 LSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+GL N           I      +  L IV  D+D+FK INDN+GH  GD V+
Sbjct: 500 LSMRDALTGLYNRRFIEECIQREIDRASRNSSSLIIVMADLDHFKHINDNYGHDAGDAVL 559

Query: 156 AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG- 213
             +S QL V F      V R GGEEF       S++ A      LR  IE+ ++      
Sbjct: 560 KTIS-QLFVGFRNGYDIVSRYGGEEFLFLLTDISQENAFQRLEKLRLQIEDLKVETGGHV 618

Query: 214 -PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             S+ I+I A        E    +I RAD+A+Y+AK +GRN++  ++
Sbjct: 619 IDSLSISIGAATFPEMGTEK-EILINRADEAMYLAKNNGRNQIAFYT 664


>gi|90579529|ref|ZP_01235338.1| putative signal transduction protein [Vibrio angustum S14]
 gi|90439103|gb|EAS64285.1| putative signal transduction protein [Vibrio angustum S14]
          Length = 461

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 7/163 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           + + S  D L+ L N       LG     + N+  SI  FDID FKQ+ND +GH VGD V
Sbjct: 292 LQKTSYTDELTHLPNRRLLNEKLGAISTLTNNQIYSIAIFDIDNFKQVNDTYGHDVGDDV 351

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   ++  +    +   + R GGEEF      +       +   +   +   +I  S+  
Sbjct: 352 LVAFANICLSSIRSTDIIARWGGEEFVLLMENTDSHHGQEICTRILHTLSQHRI-TSADT 410

Query: 215 SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
              +T S G+ E    +  I++++   D+ALYV+KK+G+N+V 
Sbjct: 411 HFSVTSSVGLCEFTTPDFTITSVMKCIDEALYVSKKTGKNKVT 453


>gi|254505926|ref|ZP_05118071.1| diguanylate cyclase with PAS/PAC sensor [Vibrio parahaemolyticus
           16]
 gi|219551149|gb|EED28129.1| diguanylate cyclase with PAS/PAC sensor [Vibrio parahaemolyticus
           16]
          Length = 317

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 18/168 (10%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL-----SIVFFDIDYFKQINDNFGHPVGDKV 154
           +++L+  D L+GL N  A  S    Y ++      +++F D+D FK +NDN GH  GD V
Sbjct: 153 LARLASEDPLTGLFNRQALTSHFADYAKRYPHRPSALIFIDLDDFKTVNDNLGHKAGDLV 212

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ--INISS 212
           +  +S  L        F+ RLGG+EF       S Q      +DL   +  SQ  I + +
Sbjct: 213 LMQISAWLKDFAPKDAFIARLGGDEFVLLCHEDSPQSIDRFTDDL---LSQSQQPIQLDN 269

Query: 213 GPSIHITISAGIAERCHKEPIS----TIIYRADQALYVAKKSGRNRVV 256
           G S  +  S GI   CH  P S     +   +DQA+Y  K++G+N V 
Sbjct: 270 G-SAKVGFSIGI---CHFTPQSYDFEALYVASDQAMYSIKQNGKNGVA 313


>gi|152995922|ref|YP_001340757.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150836846|gb|ABR70822.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 300

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 81/169 (47%), Gaps = 17/169 (10%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVG 151
           ++  LS  D L+GL N       L  + E         SI+ FD+D  K+IND  GH  G
Sbjct: 134 KLRTLSDTDQLTGLFNRRKLERDLALHYEAFERYAVPASILMFDLDNLKKINDTLGHFSG 193

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D++I  + D             R GG+EF       + + A   AN LRK  +  ++N  
Sbjct: 194 DEIIMTIGDICRSELRKTDIACRFGGDEFVIGLPNMNLENAVTFANRLRKHFK-LELNRF 252

Query: 212 SGPSIHITISAGI-----AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S   I I+IS G+     A+R  +E +     RAD ALY AK+SG+++V
Sbjct: 253 STEDIPISISIGVVTMEPADRSFEETLR----RADDALYEAKRSGKDQV 297


>gi|21232072|ref|NP_637989.1| hypothetical protein XCC2641 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767802|ref|YP_242564.1| hypothetical protein XC_1476 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21113815|gb|AAM41913.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573134|gb|AAY48544.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 788

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 9/173 (5%)

Query: 98  NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           + ++  +R D L+GL+N           I    S     ++ F D+D+FK +ND FGH V
Sbjct: 351 DEVAYHARHDALTGLINRREIERRLQRLIDPPQSPQLCHALCFVDLDHFKLVNDTFGHAV 410

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDK +   +D + +      ++GRLGG+EFA     +    A  L   +  ++     + 
Sbjct: 411 GDKFLCHFADVITMQLRPGDWLGRLGGDEFAILLANTDLAHAHTLLERMHGVL-GQPWSH 469

Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             G  +  + S G+ E R   + ++ ++  AD A + AK+ GRNR+  F + +
Sbjct: 470 QGGRPLTPSCSFGVVEIRQGADDVNLLMTAADLACHAAKEEGRNRIRSFGETD 522


>gi|121998228|ref|YP_001003015.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Halorhodospira halophila SL1]
 gi|121589633|gb|ABM62213.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Halorhodospira halophila SL1]
          Length = 698

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 18/183 (9%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S L EL  S  R+   +  D L+GL N   F   +           E+L+++F D+D+FK
Sbjct: 252 SDLTELKRSQERLQFQAYHDALTGLANRLLFKDRMARALERSRQSEEQLAVLFIDLDHFK 311

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-----L 195
            +ND+ GH  GD+++  ++ +L    G    + RLGG+EF+       +   A+     +
Sbjct: 312 DVNDSLGHTAGDRILRQVAHRLQARLGADDTLARLGGDEFSICLAEIRDHRDALACAETV 371

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +L +  + SQ       SI I++        + E +  +I  AD AL+ AK  GRN  
Sbjct: 372 HQELERPFQYSQRWFQCRCSIGISMYPD-----NGETVEELIRNADSALHNAKAEGRN-T 425

Query: 256 VCF 258
            CF
Sbjct: 426 TCF 428


>gi|297568050|ref|YP_003689394.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2]
 gi|296923965|gb|ADH84775.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2]
          Length = 356

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 97/215 (45%), Gaps = 27/215 (12%)

Query: 58  FYGLEY----------ILVENLSLVIISITISLLLGYISGSILKELF---ISYNRISQLS 104
           FYG  +          +L+   +  I    I LL G +   IL E     + Y  +   +
Sbjct: 130 FYGCRWTIELASDSGVLLLMRRAATIDQEGIDLLAGIVG--ILAEPLQRGLDYGDLFDQA 187

Query: 105 RIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           R D L+GL N   F   +G        Y + L+++  D+D FK +ND+ GH  GD+ +  
Sbjct: 188 RRDFLTGLANRRVFDERIGPLLESARRYQQPLTLLSMDLDRFKLLNDSCGHAEGDRALCR 247

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +++ L  +  T   + R+GG+EF     GS  + A I+A  +R  +      +S G    
Sbjct: 248 VAETLAGMVRTCDLLVRMGGDEFLLVLPGSDAKAAKIMAQRIRSAVS----ALSFGEDRR 303

Query: 218 -ITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
            + IS GI +      +   + RAD+ALY AK  G
Sbjct: 304 KMGISVGIVQWAAGLSLDDWLQRADEALYRAKGLG 338


>gi|229193601|ref|ZP_04320545.1| Sensory box protein [Bacillus cereus ATCC 10876]
 gi|228589906|gb|EEK47781.1| Sensory box protein [Bacillus cereus ATCC 10876]
          Length = 835

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 396 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 455

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD ++  ++ +L     +   V R GG+EF         +++AI   +    I N
Sbjct: 456 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 515

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I  G  + IT S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 516 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 569


>gi|330964835|gb|EGH65095.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 521

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 104/218 (47%), Gaps = 22/218 (10%)

Query: 56  TPFYGLEYILVENLSLVIISITISLLLGYISGSIL----KELFISYNRISQLSRIDCLSG 111
            P++   Y  +  + ++I+++ +  +L Y     L    +EL  +   +  +++ D L+ 
Sbjct: 288 APWWAYTYRSMALIGMIILALALLSMLFYRQIQHLIKAEEELTSARAALEIIAQTDGLTH 347

Query: 112 LLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           L N   F  +L          N  ++I+  DID+FKQ ND +GH  GD  +     Q+  
Sbjct: 348 LANRRCFDVALQQEWGRATRNNSTIAIILLDIDWFKQYNDRYGHLRGDDCL----KQVAG 403

Query: 165 VFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + G+ +        R GGEEF      ++   A  +A  +R  I N+ I  S+ P   +T
Sbjct: 404 LIGSSVSRASDLAARFGGEEFVILLAETNLAGAMSVAEKIRLSISNAFIEHSASPLGSVT 463

Query: 220 ISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           IS+G+       +E  + ++  AD+ LY AK +GRNRV
Sbjct: 464 ISSGVVVINAREEEGYTVVLEEADRLLYRAKANGRNRV 501


>gi|269968327|ref|ZP_06182348.1| putative GGDEF family protein [Vibrio alginolyticus 40B]
 gi|269827063|gb|EEZ81376.1| putative GGDEF family protein [Vibrio alginolyticus 40B]
          Length = 652

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 11/159 (6%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAF 157
           ++ID L+  LN +A I ++ S   K        +   D+D FK IND +GHP GD V+  
Sbjct: 482 AKIDSLTCALNRAAIIETIKSQTSKAEGDFRYVLALIDLDDFKAINDQYGHPTGDLVLQQ 541

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +   L        ++GRLGGEEF        E +       L K I  S+ ++ S  +  
Sbjct: 542 VCKALKTKLNKGEYLGRLGGEEFILLLKNVDEIDVPFRIQSLHKTI--SEKSVHSLNNHQ 599

Query: 218 ITISAGIAERCHKEPISTI--IYR-ADQALYVAKKSGRN 253
           + ISA +A      P++    +Y   DQALY AKK G+N
Sbjct: 600 LNISASLAYLSTSMPLTNFDELYSILDQALYNAKKQGKN 638


>gi|119483270|ref|ZP_01618684.1| hypothetical protein L8106_04436 [Lyngbya sp. PCC 8106]
 gi|119458037|gb|EAW39159.1| hypothetical protein L8106_04436 [Lyngbya sp. PCC 8106]
          Length = 1006

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/160 (34%), Positives = 74/160 (46%), Gaps = 12/160 (7%)

Query: 107  DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
            D L+GL N      SL          +  + ++  DID+FK+ ND FGH  GD V+  + 
Sbjct: 844  DPLTGLFNRRYLEESLEREINRACRNDHNVGVIMIDIDHFKRFNDTFGHDGGDAVLKEVG 903

Query: 160  DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
              L           R GGEE       +S +     A  +RK+I+  QINI        T
Sbjct: 904  KLLKSSLRASDIACRYGGEEMTLILPEASIENTYKRAEQVRKLIK--QINIEHKRQSLGT 961

Query: 220  ISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256
            I+A +   C  E   T   ++ RAD ALY AKK GR+RVV
Sbjct: 962  ITASLGVACFPEHGMTGDAVVQRADTALYQAKKEGRDRVV 1001


>gi|114778385|ref|ZP_01453232.1| hypothetical protein SPV1_08206 [Mariprofundus ferrooxydans PV-1]
 gi|114551348|gb|EAU53905.1| hypothetical protein SPV1_08206 [Mariprofundus ferrooxydans PV-1]
          Length = 437

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 11/165 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL---GSY----NEKLSIVFFDIDYFKQINDNFGHPV 150
            +IS ++  D L+GL N + F   L   G++      ++ ++  D+D FK IND  GH  
Sbjct: 265 EKISNMAYHDHLTGLANRALFYDRLQQAGAHLQRNRNRMGMLMLDLDRFKLINDELGHEW 324

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQIN 209
           GD+V+  +S +L+    +   V RLGG+EF+   L   SE+    +A  +  +I   Q  
Sbjct: 325 GDRVLVEVSSRLMRCVRSTDTVARLGGDEFSIILLDVPSEEFVCKMAEKVITVI--GQSL 382

Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
           +  G    + +S GI       + + T++ +AD A+Y AK+SGRN
Sbjct: 383 VLKGGHYEVGVSIGICLASSDDQDMETLVKKADAAMYQAKESGRN 427


>gi|89075613|ref|ZP_01162014.1| hypothetical protein SKA34_03750 [Photobacterium sp. SKA34]
 gi|89048620|gb|EAR54193.1| hypothetical protein SKA34_03750 [Photobacterium sp. SKA34]
          Length = 350

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRI---DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
           Y+ I Q+ R    D L+GLL+   FI       S    Y   +S++  DID  + IND +
Sbjct: 179 YDAIMQVKRTTTHDYLTGLLSREGFIPLYLYESSRCQRYRRDISMLLIDIDNLRDINDRY 238

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           G  VGDK I  L+  +       + + RL  +EF      +  Q+A  +A  LR  +   
Sbjct: 239 GLDVGDKAIMMLAKCMKETCDADVQIARLSCQEFCILIPNADLQKAECIAIALRNEVAKW 298

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + + SG  I++T+S GI    +++     I +A+ AL  AK+ G N++
Sbjct: 299 ALELESGHKINMTVSVGITTVEYQDFRYDYI-KAESALMRAKRWGYNQI 346


>gi|152968266|ref|YP_001364050.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Kineococcus radiotolerans SRS30216]
 gi|151362783|gb|ABS05786.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Kineococcus radiotolerans SRS30216]
          Length = 743

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 15/163 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI +L+  D L+GL+N   F   +          +  L+++F D+D FK +ND  GH  G
Sbjct: 580 RIEELAYTDSLTGLVNRRRFEERVEVELWEARGGDSALAVLFMDLDGFKAVNDELGHAAG 639

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG----SSEQEAAILANDLRKIIENSQ 207
           D+++  ++ +L           RLGG+EF  +  G    S+ +EA  +A  LR  I    
Sbjct: 640 DQLLVQVAARLKARLRRSDLAARLGGDEFLVSLQGLDRASARREADRVAEQLRAAIAEP- 698

Query: 208 INISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAK 248
            +I+  P + +T+S G+A       E   ++++RAD  +Y AK
Sbjct: 699 YDIAGQP-VRVTVSIGVATFPEDDAEDFRSLLHRADVRMYAAK 740


>gi|330975494|gb|EGH75560.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 397

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 86/182 (47%), Gaps = 34/182 (18%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151
           ++ + +R D L+ L N       + S  E        ++I+  DID+FK  NDN+GHP G
Sbjct: 229 QLMEFARTDGLTRLFNRRYQDEVMTSVWEHARNTPANVAIILLDIDHFKSYNDNYGHPQG 288

Query: 152 DKVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           D  +  L     Q     G   F  R GGEE     +G+  Q         R++ E  Q 
Sbjct: 289 DTCLRLLCQKVQQSAHEHGAVAF--RFGGEEVLVLMIGNPVQA--------REVAEALQT 338

Query: 209 NISS--------GPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVC 257
           +++         G +  +T+S G+A  C   P+++   +I  AD ALY AK++GRN  VC
Sbjct: 339 SVAELKLPHPVLGENALVTVSLGVA--CATAPMTSAENLIGAADNALYAAKRAGRN-CVC 395

Query: 258 FS 259
           F+
Sbjct: 396 FA 397


>gi|209544833|ref|YP_002277062.1| diguanylate cyclase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532510|gb|ACI52447.1| diguanylate cyclase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 632

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 7/172 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           L+E       + + +  D L+ LLN  A          +   +E+  ++  DID+FK IN
Sbjct: 380 LRERAAQTQALKRQAETDELTQLLNRRALQILAKPRLEISEADERAFLILLDIDHFKSIN 439

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+V+  ++  L         V R GGEEFA      ++  A  +A+ LR+ +
Sbjct: 440 DRHGHTEGDRVLVAVAAALREQVRPDDLVARFGGEEFAILIRAHTQMTALSMAHRLRRRL 499

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + ++  +    I +T S G+A          ++ +AD ALY AK++GRN V
Sbjct: 500 GSLKVISAQNVRIPVTASFGVAA-GDNLTWRQLVAKADVALYAAKRAGRNTV 550


>gi|149180252|ref|ZP_01858757.1| sensory box protein/GGDEF domain protein [Bacillus sp. SG-1]
 gi|148852444|gb|EDL66589.1| sensory box protein/GGDEF domain protein [Bacillus sp. SG-1]
          Length = 706

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY------NEKL-SIVFFDIDYFKQINDNFGHPV 150
            ++ +L+  D L+ L N   F   LG         EKL S++F D+D FK IND+ GH +
Sbjct: 276 EKMRELAFYDPLTRLPNRKLFEDRLGQIIKLAKIEEKLFSVIFLDLDRFKFINDSMGHHI 335

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-IIENSQIN 209
           GD+ +  ++D+L     +   + RL G+EF       +E++   +A  + + + E  Q+ 
Sbjct: 336 GDEFLKLVADRLKQSIRSTDTLSRLAGDEFTILLPDITEEDVISIAERINQSLAEPFQV- 394

Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
             SG  + ++ S GIA    K   +S II+RAD A+Y  KK  R++   +SD
Sbjct: 395 --SGHWLSVSASIGIAFSTGKNVGVSEIIHRADTAMYQTKKFRRSQYTIYSD 444


>gi|152996310|ref|YP_001341145.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150837234|gb|ABR71210.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 358

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 14/162 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFIS--SLGSYNEKL-SIVFFDIDYFKQINDNFGHPVGDKV 154
            ++  LS  D L+ L N        SL    +++ S+   D+D+FK+ ND +GH  GD +
Sbjct: 201 KKLRNLSEKDSLTDLYNRRILDKQYSLWKTQDRIFSLALLDLDHFKKQNDQWGHNYGDDI 260

Query: 155 IAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +   S  L  V      F  RLGGEEF      S+E        D  +II  +    S  
Sbjct: 261 LRTFSYLLKDVAINNKGFAIRLGGEEFVLLLPLSAE--------DSYQIIRQAAETFSKT 312

Query: 214 PSIH--ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           P IH  +T SAG+A+    +    ++ RAD  +Y AK  GRN
Sbjct: 313 PLIHGPVTFSAGVAQSTPNDNQGELLKRADNLMYQAKNKGRN 354


>gi|148546689|ref|YP_001266791.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas putida
           F1]
 gi|148510747|gb|ABQ77607.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida F1]
          Length = 332

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 15/194 (7%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-- 124
           +N SL       +  L +++  + ++L    NR  +L+  D L+ + N     S+L    
Sbjct: 143 KNQSLEFQVAERTRELSWVNQQLQRQL--DENR--ELAERDALTRVANRYRLESALQREC 198

Query: 125 -----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                + + LS++  D+D FK IND +GH  GD  +  +++ L         + R GG+E
Sbjct: 199 QRAQRFRQPLSLIAMDMDDFKPINDRYGHARGDAALVRVAESLRTCLRELDLLARWGGDE 258

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F      ++  EA  +A  LR+++E     +       +T+S G+ +    E    ++ R
Sbjct: 259 FVIVLPQTALGEALDVAARLRQVLE----QVEPVGDCRLTMSYGVVQWLEGEDQHALLAR 314

Query: 240 ADQALYVAKKSGRN 253
           AD+ALY AK +G+N
Sbjct: 315 ADKALYRAKGTGKN 328


>gi|332561027|ref|ZP_08415345.1| Diguanylate cyclase precursor [Rhodobacter sphaeroides WS8N]
 gi|332274825|gb|EGJ20141.1| Diguanylate cyclase precursor [Rhodobacter sphaeroides WS8N]
          Length = 439

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 12/190 (6%)

Query: 74  ISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125
           +++T+   L  ++ +   + + +     R+ +  R D L+ LLN   F  +L        
Sbjct: 241 VAVTVPPELAAVANAFNDMTRTIVEQEARLREFGRRDALTSLLNRREFDHALEQRAAPWT 300

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF--GTPMFVGRLGGEEFAAA 183
            +  +++  DID FK+IND  GH VGD V+  ++ +L      G P+F  R GGEEFA  
Sbjct: 301 GKPYALLLIDIDRFKRINDTHGHAVGDAVLRAVALRLAASAREGLPLF--RYGGEEFALL 358

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              +   EA   A  LR+ +    + +     I +TIS GIA     +  + +   AD+A
Sbjct: 359 LDRAGAAEALTEAERLRRAVAEEPVELEDSTRIAVTISVGIALGARGQAGAELFAAADRA 418

Query: 244 LYVAKKSGRN 253
           LY AK +GRN
Sbjct: 419 LYAAKDAGRN 428


>gi|327439215|dbj|BAK15580.1| FOG: GGDEF domain [Solibacillus silvestris StLB046]
          Length = 620

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 93/180 (51%), Gaps = 18/180 (10%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHS---AFISSLGSYNEKLSIVFFDIDYFKQ 141
           IS S+L+E      ++ ++   D L+ L   S   +F+ +    ++    +  DID FK+
Sbjct: 447 ISNSVLRE------QLQEMVDRDHLTKLYARSYSDSFVENSIQKDDSGMFLLIDIDNFKK 500

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH VGD+VI  ++ +L    G      R GGEE A      S+ EA  +++ + +
Sbjct: 501 VNDTYGHQVGDEVIVQIARRLQNEIGKKGICSRWGGEELAIYIPNISDSEAIGISDSIVQ 560

Query: 202 IIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++ +      S PS  +T+SAG+    +  +     +  +AD ALY AK++G+NR+  + 
Sbjct: 561 MVPS-----VSNPS--VTVSAGMITWHKSSRPNFKNMFAQADMALYHAKRNGKNRLCVYE 613


>gi|311279749|ref|YP_003941980.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter cloacae SCF1]
 gi|308748944|gb|ADO48696.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter cloacae SCF1]
          Length = 410

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 77/159 (48%), Gaps = 13/159 (8%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVF--------FDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+GLLN   F + L   +  L I F         D D FK IND++GH  GD+V+  L
Sbjct: 256 DSLTGLLNRRQFYA-LTESHSALPIPFTSDYCLLLVDTDNFKSINDSYGHLKGDEVLIHL 314

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           S  L        ++ R GGEEFA     +S + A  +A  +R  +  S +N S  P    
Sbjct: 315 SRILESCSRKGDYIFRWGGEEFAVLLPRTSLETALAVAESMRDAVTKS-VN-SELPE--F 370

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           T+S G+A     E    +  R D ALY AK  GRN+V+ 
Sbjct: 371 TVSIGVARHQPGETRDALFRRVDAALYQAKNGGRNKVLA 409


>gi|256395339|ref|YP_003116903.1| diguanylate cyclase [Catenulispora acidiphila DSM 44928]
 gi|256361565|gb|ACU75062.1| diguanylate cyclase [Catenulispora acidiphila DSM 44928]
          Length = 467

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 14/165 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           +++ +  D L+GL N  AF  +L     +       LS++  D+D+FK+IND +GH  GD
Sbjct: 295 LAEQASTDPLTGLSNRRAFDEALEREAARQRRTRAPLSLLAVDVDHFKKINDTWGHAAGD 354

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS 211
             +A L D L  +      V R+GGEEF        + Q  A       ++   S+    
Sbjct: 355 DTLAALGDLLPRLVRADDTVSRVGGEEFGVLLPDCPAPQARARADALRAEVWAASR---- 410

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G S  +T+S G+A      + +  ++  AD ALY AK+SGR+RV
Sbjct: 411 -GWSHPVTVSVGVATVPDSADALQDLVVAADMALYAAKESGRDRV 454


>gi|229072815|ref|ZP_04206014.1| Sensory box protein [Bacillus cereus F65185]
 gi|228710306|gb|EEL62281.1| Sensory box protein [Bacillus cereus F65185]
          Length = 835

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 396 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 455

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD ++  ++ +L     +   V R GG+EF         +++AI   +    I N
Sbjct: 456 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 515

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I  G  + IT S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 516 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 569


>gi|256380795|ref|YP_003104455.1| diguanylate cyclase [Actinosynnema mirum DSM 43827]
 gi|255925098|gb|ACU40609.1| diguanylate cyclase [Actinosynnema mirum DSM 43827]
          Length = 285

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 74/148 (50%), Gaps = 9/148 (6%)

Query: 117 AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
           A ++  G+    L+I   D+D+FKQ+ND FGH +GD+V+  + + L        F  R G
Sbjct: 112 ALVAERGATTGGLAIALIDLDWFKQVNDTFGHLLGDRVLQRVVELLQAELPEHGFCARYG 171

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI------AERCHK 230
           GEEF    L   +  +AI   +  ++        S  P + +T+S G+      AE   +
Sbjct: 172 GEEF-VIVLPDVDVTSAIQITEAARMRVERHAWASLAPGLRVTVSIGLAYEPPAAETPSR 230

Query: 231 EPIST--IIYRADQALYVAKKSGRNRVV 256
            P++    + RAD  LY AK+SGRN V 
Sbjct: 231 PPVAPEQQLLRADSLLYTAKQSGRNAVA 258


>gi|188580175|ref|YP_001923620.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium populi BJ001]
 gi|179343673|gb|ACB79085.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium populi BJ001]
          Length = 457

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 76/164 (46%), Gaps = 11/164 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL N       LG          + L+ +  DID FK IND +GH  GD+V
Sbjct: 290 ELAITDDLTGLHNRRYLDRHLGPVFGEAALQQKGLACLLLDIDRFKSINDTYGHEAGDEV 349

Query: 155 IAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +   +++ +  +  PM  + R GGEE      G+   +A  +A  +R+ IE +   I  G
Sbjct: 350 LRAFAER-IRQYVRPMDILARYGGEEIVMVVPGAELPDARAIAERIRERIEATPFAIDGG 408

Query: 214 PS--IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                          R      + ++ RAD ALY AK SGRNRV
Sbjct: 409 TRDIGVTVSVGVSVRRTTDTGPADLLKRADTALYRAKSSGRNRV 452


>gi|37676116|ref|NP_936512.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37200657|dbj|BAC96482.1| GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 459

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 99/192 (51%), Gaps = 16/192 (8%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRI----DCLSGLLNHSAFISSLGSY-------- 125
           I  L+GY +  +L  +F++  R+  ++      D L+GL N   F+ SL  +        
Sbjct: 264 IVRLIGYPTALLLCLVFLAIYRLYTMAHSRSLHDELTGLPNRRYFMYSLEHHFEHAKKQG 323

Query: 126 -NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF-AAA 183
            ++  +++  D+D FKQIND  GH  GDKV+   +++L     +   V R+GG+EF   +
Sbjct: 324 RDDTFAVINLDLDRFKQINDTHGHAAGDKVLIACAERLKSTLRSTDLVARIGGDEFLVLS 383

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQ 242
           A  + E++  IL N L+  + +  I +  G  I++ IS G     H+   S  ++ +ADQ
Sbjct: 384 ARMTHEKDMEILLNKLKAALCSMPI-VYEGELIYVHISIGYCLFHHEMKDSEEMLKQADQ 442

Query: 243 ALYVAKKSGRNR 254
            +Y  KK+ + R
Sbjct: 443 RMYNEKKANKMR 454


>gi|303238268|ref|ZP_07324804.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Acetivibrio cellulolyticus CD2]
 gi|302594314|gb|EFL64026.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Acetivibrio cellulolyticus CD2]
          Length = 516

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 114/242 (47%), Gaps = 18/242 (7%)

Query: 34  FFSIFIATVIFIANIFLFYIGLT--PFYGLEYILVENLSLVIISITISLLLGYISGSILK 91
           FF +FI   I +  I L        P  G+    +   +  +++I  S+++  +S    K
Sbjct: 76  FFGLFIGLFINLFEIVLLSYAYMAHPMIGI----LAGFTSKVLTILSSIVMAILSNKQEK 131

Query: 92  ---ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQ 141
              EL    +++  LS  D L+G  NH  F S+L +  EKL       +++  DID FK 
Sbjct: 132 QKEELQEQKSKLETLSVTDDLTGAYNHRFFNSTLDNEIEKLKLTRDCIALIMIDIDNFKM 191

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            ND  GH  GD ++   +  L    G    V R GG+EFA     S+ Q A+ +A+ +R 
Sbjct: 192 CNDISGHDYGDDILKGTASILKEAAGDGNTVCRYGGDEFAIILPSSNLQSASQIAHRIRN 251

Query: 202 IIENSQINISSGPSI-HITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + E  + N     S  +IT+S G++      +    +I +AD ALY +K  G++ +  + 
Sbjct: 252 LFEKQKTNYFEENSYSNITLSMGLSVYPDMADNKDELINQADMALYHSKNLGKDNIHFYQ 311

Query: 260 DI 261
           DI
Sbjct: 312 DI 313


>gi|289626717|ref|ZP_06459671.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289648005|ref|ZP_06479348.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330867293|gb|EGH02002.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 763

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 40/225 (17%)

Query: 67  ENLSLVIISITISLLLGYISGS------------------ILKELFISYNRISQLSRIDC 108
           + L L I +IT+ ++ G IS +                  +L +L  +   + Q++  D 
Sbjct: 235 QQLGLTIAAITLLIIAGSISAAMADKKLQGKEHDLQRVNALLSQLDQARVSLQQVAHYDP 294

Query: 109 LSGLLNHSAF----ISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ L+N   F       L  +   N  L+++F DID+FK+IND+ GH  GD+++  ++++
Sbjct: 295 LTNLINRRGFNQIFAEKLQEHTYNNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAER 354

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITI 220
           +         V R GG+EF         +EA  LA    ++++  +  I+ +G  + +T 
Sbjct: 355 IRSATRVQDVVSRFGGDEFCILLSIPDYEEARHLAY---RVMQKMKETIALAGRRMVMTT 411

Query: 221 SAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           S GIA        C +     ++  AD ALY +K +GRNRV  FS
Sbjct: 412 SIGIAVFPRDGSTCDE-----LLKHADLALYQSKDNGRNRVNFFS 451


>gi|284050759|ref|ZP_06380969.1| response regulator receiver modulated diguanylate cyclase
           [Arthrospira platensis str. Paraca]
          Length = 392

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 13/166 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYN--------EKLSIVFFDIDYFKQINDNFGHPVG 151
           + +L+  D L+ + N   F   L +YN        E ++++  D+DYFK  ND FGH  G
Sbjct: 195 LQRLALYDDLTQVANRRRFNEYL-AYNWHRCSREQEPIALILCDVDYFKPYNDTFGHQAG 253

Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-N 209
           D  +  ++  +       +  V R GGEEFA     +    A  +A  +RK +EN ++ +
Sbjct: 254 DDCLHKIARAISGAIQRSVDLVARYGGEEFAIILPNTPINGAVKVAERIRKQVENLRVPH 313

Query: 210 ISSGPSIHITISAGIAER-CHKE-PISTIIYRADQALYVAKKSGRN 253
             S  S ++T+S G+A +  H E  + ++I +AD+ALY AK  GRN
Sbjct: 314 PGSQSSDYVTVSLGVACKIPHSELSVDSLIAQADEALYQAKNQGRN 359


>gi|254458134|ref|ZP_05071560.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207084970|gb|EDZ62256.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 427

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 73/135 (54%), Gaps = 8/135 (5%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           + +++  D+D+FK++ND++GH VGD V+   S  L  +     ++ R GGEEF      +
Sbjct: 293 EFALMMCDLDHFKRVNDSYGHAVGDVVLKHFSSILEEILRKSDYIFRFGGEEFMVLLPMT 352

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGI-------AERCHKEPISTIIYRA 240
            ++EA ILA  +   I  S++ I    +I  T+S G        +    +E I   I + 
Sbjct: 353 DKKEALILAQKVCDAIVASEV-IVEDITIKYTVSIGTISIIIDNSVVIGQEAIDKYITQV 411

Query: 241 DQALYVAKKSGRNRV 255
           D+ LY+AK+ GRNRV
Sbjct: 412 DERLYLAKERGRNRV 426


>gi|145297211|ref|YP_001140052.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142849983|gb|ABO88304.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 386

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 23/187 (12%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDY 138
           +  ++ EL +    +   SR+D L+G+ N +     L     +       LS+V  D+DY
Sbjct: 197 NADLVAELKLVSEHLKLTSRLDGLTGIANRAHLDYCLERAWRRCHRARAPLSLVLVDVDY 256

Query: 139 FKQINDNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           FKQ ND +GH  GD    +V A L++   V         R GGEEFA     +S Q A  
Sbjct: 257 FKQFNDLYGHQQGDECLQRVAALLAE---VQRREDDLAARYGGEEFALLLPCTSMQGALQ 313

Query: 195 LANDLRKIIEN----SQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAK 248
           +A ++R  +++     Q ++ SG    ++ S G+A     +   I+ +I +AD ALY AK
Sbjct: 314 IAENVRMALKDLGIPHQKSLVSG---RVSCSFGVATLVPDQSGSIAELIQKADAALYQAK 370

Query: 249 KSGRNRV 255
            +GR+R+
Sbjct: 371 HNGRDRI 377


>gi|121607371|ref|YP_995178.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Verminephrobacter eiseniae
           EF01-2]
 gi|121552011|gb|ABM56160.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Verminephrobacter eiseniae EF01-2]
          Length = 981

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 93/177 (52%), Gaps = 13/177 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI +L+  D L+ L N           I+   +   +L+++F D+D+FK +ND+ GH +G
Sbjct: 551 RIQRLAHFDPLTDLPNRVLLAERTQRQIAQEQARGGQLALLFLDLDHFKNVNDSLGHRIG 610

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQINI 210
           D ++  ++ +L  + G    V RLGG+EF      +S   AA +A+  L  + +  QI+ 
Sbjct: 611 DILLVAVARRLQSLIGPQDTVSRLGGDEFLLLLPATSAAHAAKVASALLTAVAQPFQIDP 670

Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS-DIENNT 265
                +  T+S GIA      E   T+  RAD A+Y AK+SGRNR   F+ D++  T
Sbjct: 671 Y---ELSTTLSVGIAMCPADGESFDTLYQRADAAMYSAKQSGRNRYGFFTADLQART 724


>gi|94984686|ref|YP_604050.1| diguanylate cyclase [Deinococcus geothermalis DSM 11300]
 gi|94554967|gb|ABF44881.1| diguanylate cyclase [Deinococcus geothermalis DSM 11300]
          Length = 368

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 70/152 (46%), Gaps = 7/152 (4%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL N  A    +S+L       ++V FD+D+FK +ND  GH  GD V+  ++    
Sbjct: 200 DALTGLANRRAAEEQLSALARSGHGFTLVLFDLDHFKAVNDLHGHATGDLVLQGVARAAQ 259

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
            V        R GGEEF          +   L + LR  + + +    +G    +T   G
Sbjct: 260 HVLPRGGVAARWGGEEFLLILPPLPSAQVRALLDLLRAQLRSQRHGAVTG----VTACFG 315

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +A  C  E    ++ RAD A+Y  K+ GRN V
Sbjct: 316 VATACPGEHPDDVLARADAAMYAVKRQGRNDV 347


>gi|117924704|ref|YP_865321.1| diguanylate cyclase [Magnetococcus sp. MC-1]
 gi|117608460|gb|ABK43915.1| diguanylate cyclase [Magnetococcus sp. MC-1]
          Length = 390

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 8/141 (5%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            LS++F D+D FK IND +GH  GD+V+   +  ++       F+ R GGEEF A    +
Sbjct: 250 PLSLMFIDLDNFKSINDAYGHDRGDEVLKQAASAILTSMRRVDFLVRWGGEEFIAVLPNT 309

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALY 245
             +E   + + L  +     +     P   +T S G+AE      + + ++I  AD+ +Y
Sbjct: 310 KAEEIVYVQDRLADV--GLGLRPDGAP---VTASLGLAELISDQAKDLESLIELADKRMY 364

Query: 246 VAKKSGRNRVVCFSDIENNTC 266
           +AK+SG+NR +CF D E +  
Sbjct: 365 LAKQSGKNR-ICFGDNEEDMT 384


>gi|326424420|ref|NP_763512.2| GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|319999810|gb|AAO08502.2| GGDEF family protein [Vibrio vulnificus CMCP6]
          Length = 459

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 104/218 (47%), Gaps = 31/218 (14%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI----D 107
           Y  L P+Y                  I  L+GY +  +L  +F++  R+  ++      D
Sbjct: 253 YAALMPWY---------------QTQIVRLIGYPTALLLCLVFLAIYRLYTMAHSRSLHD 297

Query: 108 CLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            L+GL N   F+ SL  +         ++  +++  D+D FKQIND  GH  GDKV+   
Sbjct: 298 ELTGLPNRRYFMYSLEHHFEHAKKQGRDDTFAVINLDLDRFKQINDTHGHAAGDKVLIAC 357

Query: 159 SDQLVVVFGTPMFVGRLGGEEF-AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +++L     +   V R+GG+EF   +A  + E++  IL N L+  + +  I +  G  I+
Sbjct: 358 AERLKSTLRSTDLVARIGGDEFLVLSARMTHEKDMEILLNKLKAALCSMPI-VYEGELIY 416

Query: 218 ITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNR 254
           + IS G     H+   S  ++ +ADQ +Y  KK+ + R
Sbjct: 417 LHISIGYCLFHHEMKDSEEMLKQADQRMYNEKKANKMR 454


>gi|260777792|ref|ZP_05886685.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605805|gb|EEX32090.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 381

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 85/162 (52%), Gaps = 14/162 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +++++  D LSGL N          SL S  +   I  FDID+FK +ND +GH VGD+VI
Sbjct: 229 LNKITYTDQLSGLHNRHYLQKVEQQSLAS--KGYFIGIFDIDHFKAVNDKYGHDVGDQVI 286

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  +        +  R+GGEEF      +S Q+A  + N +R  I+ SQ   +  P+
Sbjct: 287 KRVAAIIKSRIRVADYAFRIGGEEFVVLINTTSVQDAKQVMNRIR--IDVSQ--FTQAPN 342

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +TIS GI       P S  + +AD  LY AK+SGRN + C
Sbjct: 343 --VTISGGIHPVVGTIPQS--LKKADALLYKAKESGRNVIYC 380


>gi|260222144|emb|CBA31416.1| hypothetical protein Csp_F37420 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 169

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 66/138 (47%), Gaps = 6/138 (4%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           ++V  DID FK+IND++GH  GD V+A  +  L  +        R GGEEF       S 
Sbjct: 22  ALVLMDIDNFKRINDSYGHAGGDAVLAHAARMLSQLTRLSDIAVRYGGEEFCVLLHACSA 81

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQA 243
           +EA   A  L        + I  G ++  T S G A       R   E +  +I  ADQA
Sbjct: 82  EEAGRFAQRLVDEAGRQSVRIKDGRNVRFTFSVGYACAPDGQTRGGIESLEAVIDCADQA 141

Query: 244 LYVAKKSGRNRVVCFSDI 261
           LY AK +GRN+V   S I
Sbjct: 142 LYAAKTAGRNQVQSSSGI 159


>gi|228955597|ref|ZP_04117597.1| Sensory box protein [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228804073|gb|EEM50692.1| Sensory box protein [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 835

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 396 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 455

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD ++  ++ +L     +   V R GG+EF         +++AI   +    I N
Sbjct: 456 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 515

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I  G  + IT S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 516 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 569


>gi|229082562|ref|ZP_04215025.1| Sensory box protein [Bacillus cereus Rock4-2]
 gi|228700994|gb|EEL53517.1| Sensory box protein [Bacillus cereus Rock4-2]
          Length = 835

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 396 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 455

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD ++  ++ +L     +   V R GG+EF         +++AI   +    I N
Sbjct: 456 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 515

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I  G  + IT S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 516 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 569


>gi|218510445|ref|ZP_03508323.1| putative sensory box/GGDEF family protein [Rhizobium etli Brasil 5]
          Length = 641

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 12/164 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFF--DIDYFKQINDNFGHPVGDKV 154
           +LS  D L+G+ N  A    L        +E    V F  D+D+FK+ ND +GH  GD+ 
Sbjct: 218 ELSNTDYLTGISNRRALDRRLDECWAAWKDEGRDFVVFLIDVDFFKRFNDRYGHQEGDRC 277

Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  +++ L  VV  +   +GR GGEEF       +   A  LA  +R  +E   I     
Sbjct: 278 LTVVANVLKAVVESSGGMIGRYGGEEFIVVMPAETPSIAMSLAEKIRMEVEFLAIAHDER 337

Query: 214 P--SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
           P  S  +T+S G+A       E +  I+  AD ALY AK SGRN
Sbjct: 338 PDDSPIVTVSIGVAFTREDVGEKVERIVREADLALYNAKASGRN 381


>gi|52140213|ref|YP_086617.1| sensory box/GGDEF family protein [Bacillus cereus E33L]
 gi|51973682|gb|AAU15232.1| sensory box/GGDEF family protein [Bacillus cereus E33L]
          Length = 892

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144
           L+    ++  L+  D L+GL N   F   L         S N+ ++++F D+D FK+IND
Sbjct: 453 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 511

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
             GH VGD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  I+
Sbjct: 512 RLGHGVGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 571

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            N    I     + IT S GIA    C  + ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 572 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTELMKNADMAMYRAKANGKNRFVFFS 626


>gi|75759044|ref|ZP_00739151.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74493443|gb|EAO56552.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 931

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 492 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVMFLDLDRFKKINDR 551

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD ++  ++++L     +   V R GG+EF         +++AI   +    I N
Sbjct: 552 LGHDVGDLLLIEVANRLRGCLRSKDVVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 611

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I  G  + IT S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 612 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 665


>gi|332534728|ref|ZP_08410556.1| response regulator/GGDEF domain protein [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035815|gb|EGI72299.1| response regulator/GGDEF domain protein [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 411

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/128 (42%), Positives = 70/128 (54%), Gaps = 5/128 (3%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           ++   DID+FK IND +GH VGD+V+  LS      F   + V RLGGEEFA   +   +
Sbjct: 287 ALAMLDIDHFKSINDTYGHDVGDEVLKGLSICFSKYFKKHL-VARLGGEEFAVYFIDVDK 345

Query: 190 QEAAILANDLRKIIE-NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           QEA       R  IE NSQ    S   I  TIS G A     + I  ++ +AD  LY AK
Sbjct: 346 QEALKRLEGFRYFIEMNSQ--EFSKAKIKFTISIGFANGPVYQ-IDELLKQADLKLYDAK 402

Query: 249 KSGRNRVV 256
           +SGRN+VV
Sbjct: 403 ESGRNKVV 410


>gi|325920655|ref|ZP_08182565.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           gardneri ATCC 19865]
 gi|325548845|gb|EGD19789.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           gardneri ATCC 19865]
          Length = 569

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      SL          +  LS++  D+D+FKQ ND+ GH  GD ++A + 
Sbjct: 402 DALTGLYNRRYLEESLSHELARCARRDLPLSVLMLDVDHFKQFNDSQGHAGGDLLLAAVG 461

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L+          R GGEEF      +   EA  +A  +R  I    +         +T
Sbjct: 462 ELLLTRLRAEDVACRYGGEEFTVILPETDGAEAMRVAEQIRGFIAALAVTDGQRSLPRVT 521

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+A      E  S++I +AD ALY+AK  GRNRV
Sbjct: 522 ASIGVASFPIDGELGSSLIQKADAALYIAKHRGRNRV 558


>gi|294667325|ref|ZP_06732544.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292602877|gb|EFF46309.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 569

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      SL             LS++  D+D+FKQ ND+ GH  GD ++A + 
Sbjct: 402 DALTGLYNRRYLEESLSHELARCARRGLPLSVLMLDVDHFKQFNDSQGHAGGDLLLAAVG 461

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L+          R GGEEF      +  +EA  +A  +R  I    ++  +     +T
Sbjct: 462 ELLLTRLRAEDVACRYGGEEFTVLLPEADGEEAMRVAEQIRGYIAALAVSDGARALPKVT 521

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+A      E  +++I +AD ALY AK +GRNRV
Sbjct: 522 ASIGVASFPVDGEQGASLIQKADAALYRAKHAGRNRV 558


>gi|220934770|ref|YP_002513669.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996080|gb|ACL72682.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 305

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 13/173 (7%)

Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GL N      ++           + L+++  D+D+FK  ND +GH  GD+ + 
Sbjct: 116 ARQDPLTGLANRRMLDEAMEREWSRARRQGQPLAMLMCDVDHFKPYNDRYGHQAGDECLC 175

Query: 157 FLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            L++    L+   G    V R GGEEF      + E  A  +A  ++  + N  +     
Sbjct: 176 RLAELFQDLLHREGD--LVARYGGEEFVVLLPNTDEIGALRVAQGIQDALRNLDLGHEDT 233

Query: 214 PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           P   +T+S G+A      +  ST++   D+ LY+AK+ GR+R+V  +D  NN+
Sbjct: 234 PQGRLTLSIGLAALVPDHDDRSTLLAEVDRRLYLAKQQGRDRIVHAADHNNNS 286


>gi|187927389|ref|YP_001897876.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Ralstonia pickettii 12J]
 gi|187724279|gb|ACD25444.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Ralstonia pickettii 12J]
          Length = 1221

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 25/187 (13%)

Query: 83  GYISGSILKELFISYNRISQ--LSR---IDCLSGLLNHSAFISSL------GSYNEKLSI 131
           G ++GSI+  +  S  R  Q  L R    D L+GLLN  +F+++L         +E+  +
Sbjct: 772 GQVAGSIVTFIETSERRRQQDELRRRATFDDLTGLLNRPSFVTALETRLQQADASERHPV 831

Query: 132 V-FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           V   D+D FK+IND+ GH  GD+++  ++++L    G    VGRLGG+EFA       E 
Sbjct: 832 VAILDLDGFKEINDSLGHATGDQLLRGVAERLTDQLGPHADVGRLGGDEFAFVV---DES 888

Query: 191 EAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEP-----ISTIIYRADQAL 244
               +A  +  ++E+ +   S +G  + I  S G A    + P     + T++  AD A+
Sbjct: 889 YGPPIATRIEAVMESIRRPFSIAGLDLAINGSVGAA----RYPGAGLDVDTLLRSADVAM 944

Query: 245 YVAKKSG 251
           YVAK+ G
Sbjct: 945 YVAKREG 951


>gi|168214269|ref|ZP_02639894.1| sensory box protein/histidinol phosphate phosphatase family protein
           [Clostridium perfringens CPE str. F4969]
 gi|170714256|gb|EDT26438.1| sensory box protein/histidinol phosphate phosphatase family protein
           [Clostridium perfringens CPE str. F4969]
          Length = 624

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 20/170 (11%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           KE+ I  +R++     D L+ + N   F  S           ++K +++F D+D+FK+IN
Sbjct: 182 KEMEIELDRMANY---DELTNIPNMRLFFKSFRNTINESKKMDKKFAVLFIDLDWFKEIN 238

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILAND 198
           DN+GH VGD+V+     ++         +GR+GG+EFAA     S++E        + N 
Sbjct: 239 DNYGHDVGDEVLVCAVKRIYKCLRKGDILGRIGGDEFAAILKDISDREEIEKIVKDIQNS 298

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           LRK I+   +  +   SI ITI     E+     I  ++  +D+A+Y  K
Sbjct: 299 LRKRIKIGDVTCNIDSSIGITIFPEDGEK-----IEVLMRNSDKAMYKVK 343


>gi|309779911|ref|ZP_07674665.1| sensory box protein/GGDEF domain protein [Ralstonia sp. 5_7_47FAA]
 gi|308921270|gb|EFP66913.1| sensory box protein/GGDEF domain protein [Ralstonia sp. 5_7_47FAA]
          Length = 1056

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 25/187 (13%)

Query: 83  GYISGSILKELFISYNRISQ--LSR---IDCLSGLLNHSAFISSL------GSYNEKLSI 131
           G ++GSI+  +  S  R  Q  L R    D L+GLLN  +F+++L         +E+  +
Sbjct: 607 GQVAGSIVTFIETSERRRQQDELRRRATFDDLTGLLNRPSFVTALETRLQQADASERHPV 666

Query: 132 V-FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           V   D+D FK+IND+ GH  GD+++  ++++L    G    VGRLGG+EFA       E 
Sbjct: 667 VAILDLDGFKEINDSLGHATGDQLLRGVAERLTDQLGPHADVGRLGGDEFAFVV---DES 723

Query: 191 EAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEP-----ISTIIYRADQAL 244
               +A  +  ++E+ +   S +G  + I  S G A    + P     + T++  AD A+
Sbjct: 724 YGPPIATRIEAVMESIRRPFSIAGLDLAINGSVGAA----RYPGAGLDVDTLLRSADVAM 779

Query: 245 YVAKKSG 251
           YVAK+ G
Sbjct: 780 YVAKREG 786


>gi|149190181|ref|ZP_01868456.1| putative regulatory components of sensory transduction system
           [Vibrio shilonii AK1]
 gi|148835928|gb|EDL52890.1| putative regulatory components of sensory transduction system
           [Vibrio shilonii AK1]
          Length = 320

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 88/171 (51%), Gaps = 17/171 (9%)

Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N        +  I   G +   LS++  D+D+FK  NDN+GH  GD+ +  ++
Sbjct: 148 DGLTKLFNRRYMDEKLTELIQWHGRHQMPLSVILMDVDHFKAFNDNYGHTEGDQCLINIA 207

Query: 160 DQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS---SGPS 215
             L V+F  +  +VGR GGEEF         +EA   A  +R+ I  SQ+NI    S  +
Sbjct: 208 QFLDVMFIRSGEYVGRYGGEEFVILLSKCDIREAEENAARVREGI--SQLNIPHQFSHTT 265

Query: 216 IHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             +T+S G+        E I+ +   AD+ LY AK++GRNR V  S IE +
Sbjct: 266 DRVTLSLGVFSLVPTGTETINELYESADKLLYQAKRTGRNRYV--SQIEGD 314


>gi|87310485|ref|ZP_01092614.1| probable two component system, transcriptional regulatory protein
           [Blastopirellula marina DSM 3645]
 gi|87286706|gb|EAQ78611.1| probable two component system, transcriptional regulatory protein
           [Blastopirellula marina DSM 3645]
          Length = 877

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 9/167 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
           +R + +SR D L+GL         L         Y+  LS V  DID F++IN+ +G   
Sbjct: 517 SRPAGVSRNDPLTGLATRRQLDEQLEREWFRAVRYHLPLSCVVIDIDSFEEINNQYGFEA 576

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+VI  ++  +        +V RL G+ F  A + S+E +AA  A  L K++  S + I
Sbjct: 577 GDQVIQRIAQIVQGHTRLTDYVCRLAGDRFLIAMVESNESQAAQFAERLCKVLAGSAVTI 636

Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             G ++  T S G+A+       +  +I  A++A+ +AK+ GRNRVV
Sbjct: 637 -HGQTLTTTASFGVAQTHADTTNLDKLIELAEEAIVIAKQLGRNRVV 682


>gi|118580910|ref|YP_902160.1| GAF sensor-containing diguanylate cyclase [Pelobacter propionicus
           DSM 2379]
 gi|118503620|gb|ABL00103.1| diguanylate cyclase with GAF sensor [Pelobacter propionicus DSM
           2379]
          Length = 355

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 13/175 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHP 149
           +    QL+  D L+GL N   F   L    E+        S++  D+D FK  ND  GH 
Sbjct: 180 HEETHQLAINDSLTGLNNRRYFDKVLPQEYERAHREGLPFSLMMIDVDNFKLFNDTHGHH 239

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQI 208
           +GD+++A +   L     +  F  R GGEEF      +  + A  +A  +R +++  S+ 
Sbjct: 240 LGDRILATIGRVLRKTLRSIDFAFRYGGEEFVVILPETDLESAHKVAERIRQRVMAESRK 299

Query: 209 NISSGPSIHITISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRNRVVCFSD 260
            + +     +T+S GI+  C+    +   T++  ADQ LY AK++GRNRV+   D
Sbjct: 300 LLRNPQDRPVTVSVGIS--CYPRDAACSITLLAMADQLLYQAKRTGRNRVLVAED 352


>gi|300309853|ref|YP_003773945.1| two-component response regulator with GGDEF domain [Herbaspirillum
           seropedicae SmR1]
 gi|300072638|gb|ADJ62037.1| two-component response regulator with GGDEF domain (diguanylate
           cyclase) protein [Herbaspirillum seropedicae SmR1]
          Length = 277

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 85/169 (50%), Gaps = 16/169 (9%)

Query: 107 DCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L   +N        L+++  DID F + ND++G   GDKV+  + 
Sbjct: 105 DALTGLANRRQFERGLLEEFNRAARTSLSLAVIMIDIDLFDEYNDSYGRMAGDKVLRRVG 164

Query: 160 DQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +      P   + R G +E A    GS  + A I+A  +RK IE   I  S+ P+  +
Sbjct: 165 SAIRDTNVRPEDLLSRFGAQEIAVLLPGSRLEGALIVAERIRKSIELLDIPHSASPTGRV 224

Query: 219 TISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           TIS GI+    +R   EP  T++  A+++L +AK +GR+   C   +E+
Sbjct: 225 TISIGISSVAPQRQVDEP-ETVLREAEESLALAKSAGRD---CIRTVED 269


>gi|300088209|ref|YP_003758731.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527942|gb|ADJ26410.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 1108

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 84/177 (47%), Gaps = 15/177 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           +LFI  N     +  D L+GL NH  F       IS    +    S++  D+D FK  ND
Sbjct: 718 QLFIQAN---TRANTDELTGLYNHRHFHERVEQEISRGSRFGITFSLILLDLDLFKVYND 774

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+++  +   +           R GGEEFA     +   +A  +A  LRK IE
Sbjct: 775 IYGHLAGDQLLRKVGQMIQSSIRNIDLPFRYGGEEFAVLLPETRIDDAYRVAERLRKTIE 834

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSD 260
                 SS   + +T S G++   +   +   +I+RAD ALY AK++GRNR    S+
Sbjct: 835 AR----SSFREMPVTASLGVSNWPNDGLLKEELIHRADTALYRAKRTGRNRTCLASE 887


>gi|226942092|ref|YP_002797166.1| hypothetical protein LHK_03180 [Laribacter hongkongensis HLHK9]
 gi|226717020|gb|ACO76158.1| Predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Laribacter hongkongensis
           HLHK9]
          Length = 1113

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 13/166 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVG 151
           RI  L+  D L+GL N +A I  LG    +        ++++ D+D FKQIND  GH  G
Sbjct: 671 RIRYLAEHDSLTGLYNRAALIERLGDVLAQARRQPHVGAVMYLDLDRFKQINDTLGHEAG 730

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQIN 209
           D ++  ++ ++  V  T   VGR+GG+EF    A L      AA+    L  ++E     
Sbjct: 731 DALLIEVARRIRSVVRTGDAVGRMGGDEFVVLLARLEYPRDAAAVADKLLAALLEPF--- 787

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
           + SG  +    S G+A      E   T++  AD A+Y  K  GR R
Sbjct: 788 VLSGQRVESPASIGVAMFPQDGEDADTLLRHADAAMYDVKTQGRGR 833


>gi|206562440|ref|YP_002233203.1| RNase II stability modulator [Burkholderia cenocepacia J2315]
 gi|198038480|emb|CAR54438.1| putative cyclic-di-GMP signaling protein [Burkholderia cenocepacia
           J2315]
          Length = 667

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 17/186 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDID 137
           SG  + E   +  R+++L+  D L+GL N        H+A  +       ++ I+F D+D
Sbjct: 218 SGIDITEERNAQQRLTELANTDVLTGLPNRHAISERIHAAIAAESEQTRGQVGILFLDLD 277

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE----FAAAALGSSEQEAA 193
            FK++ND++GH  GD+++  +S  +     +   + RLGG+E    F        E  A 
Sbjct: 278 NFKRVNDHYGHITGDRLLQDVSAIISGCLPSGATLARLGGDEFLVLFEQGTRPLLEATAQ 337

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           I+   LR  I    + + +  SI I +        H + + T+I  AD A+YVAK+ G++
Sbjct: 338 IILERLRTPIHLGLMEVYTSCSIGIAMHP-----QHGDSLETLIRSADTAMYVAKEEGKH 392

Query: 254 RVVCFS 259
               FS
Sbjct: 393 TYRVFS 398


>gi|170078108|ref|YP_001734746.1| GGDEF domain-containing protein [Synechococcus sp. PCC 7002]
 gi|169885777|gb|ACA99490.1| GGDEF domain protein [Synechococcus sp. PCC 7002]
          Length = 519

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 84/177 (47%), Gaps = 16/177 (9%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           ++E   + NRI QLS  D L+G+ N   F       +S L       S+ FFD+D  K I
Sbjct: 318 VQERKKAENRIRQLSLTDELTGVYNRRGFFMLVEQELSLLERQKLPFSLFFFDVDNLKMI 377

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+ GH VGD+VI   +  L   F     + RLGG+EF   A   ++ EA ++   L+  
Sbjct: 378 NDHLGHGVGDRVIVDAAQILRDSFRRADILARLGGDEFTCFA-PVNQAEADLICQRLQTA 436

Query: 203 IENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAK---KSGRN 253
           I N   N        ++IS G A   E      + T++ +AD+ +Y  K   K GR 
Sbjct: 437 IAN--FNQQQQRPYQLSISTGYASYTEYPGNASLRTLLKQADEKMYRNKRQRKQGRQ 491


>gi|219667763|ref|YP_002458198.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2]
 gi|219538023|gb|ACL19762.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2]
          Length = 515

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 82/156 (52%), Gaps = 6/156 (3%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           S ID  +G  N    +    + + +L   +++F DID FK IND +GH  GD ++  +++
Sbjct: 341 SSIDPQTGFFNKQYMLDYDKAESPELGNTALLFIDIDNFKSINDLYGHLAGDSILKSVAE 400

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            +    G+   V R GG+EF        + EA + A  +R  + N+ I       + +++
Sbjct: 401 CIRCSIGSEAQVIRFGGDEFVVIFANPGKDEAYLAAEAIRTKV-NALILPEHYGDLTLSL 459

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S G+AE   + P+  +I +AD+A+Y AK  G+NR +
Sbjct: 460 SIGLAE--GRVPVRELITQADEAMYSAKSQGKNRTM 493


>gi|74317384|ref|YP_315124.1| diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056879|gb|AAZ97319.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 738

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 25/190 (13%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           E ++   RIS ++  D L+GL N +         I    S   K +++F D+D FK+IND
Sbjct: 291 EAYMQEKRISHMAMHDALTGLPNRTYLDARINEAIEQSRSSATKFALLFIDLDNFKRIND 350

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI---------L 195
            +GH  GD+++  + + L         + R GG+EF        E +            L
Sbjct: 351 LYGHKAGDQLLVSVGELLRASLRATDVLARWGGDEFVVLLPFPGEIDMVRRIASELLDGL 410

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            NDL K   ++ + +S G +I+   +         E   T++ +AD+AL+ AK  GRN +
Sbjct: 411 RNDLEKQCRDTFVTVSIGVAIYPDDA---------ESAETLLVQADKALFYAKSQGRNNI 461

Query: 256 VCFSDIENNT 265
             ++D++   
Sbjct: 462 QLYADLQTRA 471


>gi|27380653|ref|NP_772182.1| hypothetical protein bll5542 [Bradyrhizobium japonicum USDA 110]
 gi|27353818|dbj|BAC50807.1| bll5542 [Bradyrhizobium japonicum USDA 110]
          Length = 835

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 15/163 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           RI+ ++  D L+ L N   F   L         +++ +++ D+D FK IND+FGHP GD+
Sbjct: 403 RIAHMAHHDGLTDLPNREYFQQRLKQALDQAGGKRVGVLYIDLDLFKNINDSFGHPAGDR 462

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFA---AAALGSSEQE--AAILANDLRKIIENSQI 208
           ++  ++++L           RLGG+EFA   AA +  +E    AA+L + LR   E    
Sbjct: 463 LLKEVAERLTTAVRGANLAARLGGDEFAVILAADVSPNEASACAALLIDMLRAPYEIDGQ 522

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
            +  G SI I +S G      +     ++  AD ALY AK  G
Sbjct: 523 EMVIGASIGIALSPGDGVTSEE-----LMRNADMALYRAKSDG 560


>gi|296505772|ref|YP_003667472.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
 gi|296326824|gb|ADH09752.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
          Length = 892

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 453 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 512

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD ++  ++ +L     +   V R GG+EF         +++AI   +    I N
Sbjct: 513 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 572

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I  G  + IT S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 573 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 626


>gi|269965354|ref|ZP_06179474.1| GGDEF family protein [Vibrio alginolyticus 40B]
 gi|269830000|gb|EEZ84229.1| GGDEF family protein [Vibrio alginolyticus 40B]
          Length = 527

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 87/189 (46%), Gaps = 9/189 (4%)

Query: 75  SITISLLLGYISGSILKELFISY-NRISQLSR---IDCLSGLLNHSAFISSLGS---YNE 127
            + + L+L  +    LKE    + N ++QL +    D L+ L N       L     ++ 
Sbjct: 336 ELQLKLILSELENKELKETTKQHKNTVAQLQQDVFTDPLTSLHNRRWLEVKLKDLLLHDT 395

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALG 186
             +++  DID+FK IND   H VGDK I  +S +L   F        R GGEEF      
Sbjct: 396 PFALMVIDIDHFKSINDELSHLVGDKAIKSVSQELASYFKFKSASCVRFGGEEFLVILEN 455

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
           +  + A + A + R+ I     +   G    +T+S GI      E      YRAD+ALY 
Sbjct: 456 TQLERAEMHAENYRERIYQYGWDDILGER-GLTVSIGITLHREGENTQRTFYRADKALYR 514

Query: 247 AKKSGRNRV 255
           AK +GRN+V
Sbjct: 515 AKANGRNQV 523


>gi|254502224|ref|ZP_05114375.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222438295|gb|EEE44974.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 831

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 94/192 (48%), Gaps = 18/192 (9%)

Query: 83  GYISG-----SILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEK----L 129
           GY +G     S + E+ ++   ++QL+  D L+G+ N + F+      L +  EK    L
Sbjct: 362 GYFTGYRGVASDITEMKVANALVTQLAEQDALTGIGNRNWFLKQADLKLAAQLEKRANTL 421

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           ++   D+D FK +ND  GH  GD ++  ++++   +      + R GG+EFAA     S+
Sbjct: 422 TLFLIDLDNFKVVNDTSGHAAGDDLLIQVAERFRSISEGRTLLARFGGDEFAAVGEFVSD 481

Query: 190 QEAAILANDLRKIIENSQINISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247
           Q A + AN+L K+          G     I  + G +  R     ++ ++  AD ALY A
Sbjct: 482 QAAEVFANELVKVTRKP---FKVGKREFAIGATVGFSRLRKTNSSVNDLMREADIALYKA 538

Query: 248 KKSGRNRVVCFS 259
           K+ GR + + F+
Sbjct: 539 KEGGRGQALAFA 550


>gi|77361433|ref|YP_341008.1| sensory box protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76876344|emb|CAI87566.1| conserved protein of unknown function ; putative sensory box
           protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 1007

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 73/139 (52%), Gaps = 13/139 (9%)

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           E+L I+  DID+FK +ND  GH  GD ++ F+S +++       FV R+GG+EF      
Sbjct: 606 EQLVIMLLDIDHFKDVNDTLGHHYGDALLKFVSQRILESAKNAEFVARIGGDEFVIVFSK 665

Query: 187 SSEQEAAILANDLRKIIENSQINISSG-----PSIHITISAGIAERCHK-EPISTIIYRA 240
             EQ        +++I EN  +++SS        + I+ S GIA   +  E    ++  A
Sbjct: 666 IKEQH-------IKQIAENILLSLSSAIYIENEELFISASIGIASAPNDGENTEQLLKAA 718

Query: 241 DQALYVAKKSGRNRVVCFS 259
           DQA+Y AK +GRN    FS
Sbjct: 719 DQAMYKAKVNGRNGFEFFS 737


>gi|224826032|ref|ZP_03699135.1| diguanylate cyclase [Lutiella nitroferrum 2002]
 gi|224601669|gb|EEG07849.1| diguanylate cyclase [Lutiella nitroferrum 2002]
          Length = 262

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 82/172 (47%), Gaps = 18/172 (10%)

Query: 98  NRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  LS  D L+GL N           +  LG    +  +   D+D+FK IND +GH V
Sbjct: 94  QRLHWLSSRDELTGLPNRRHALVRLREELQRLGRSGGQFCLTLADVDHFKSINDGYGHDV 153

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  ++  L           R GGEEF      SS +E   +   LR+     Q+ +
Sbjct: 154 GDRVLGAIAHGLSEGVRDYDVCARWGGEEFLLLFPHSSIEEVQSVLVRLRR-----QVGV 208

Query: 211 SSGP-----SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            SG      +  +T+S G+   R   EP+  I+ RADQALY AK  GR+ VV
Sbjct: 209 LSGELLPAGAAGLTLSFGLTLCRDAAEPLDAILQRADQALYQAKGQGRDCVV 260


>gi|257059320|ref|YP_003137208.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp.
           PCC 8802]
 gi|256589486|gb|ACV00373.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp.
           PCC 8802]
          Length = 624

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 13/180 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
            + +EL ++   + QL+ +D L+ + N   F          L    + LS++  D+D+FK
Sbjct: 442 QLYRELRLANEELEQLAFVDSLTEVANRRRFDEYLQQEWRRLTRAKQPLSLIVCDVDFFK 501

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GHP GDK +  ++  L      P   V R GGEEFA     +    A  +A ++
Sbjct: 502 FYNDTYGHPAGDKCLQQVAQVLQQSVKRPADLVARHGGEEFAIVLPNTDISGAVHIAGEV 561

Query: 200 RKIIENSQI-NISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRV 255
           R  +   ++ + SS  S ++T+S GIA   +  P   +  ++  AD ALY AK  GR+R+
Sbjct: 562 RSRLRGLKLEHRSSLVSDYVTLSFGIAT-TYPTPQTVVENLLIDADLALYQAKGQGRDRI 620


>gi|294338481|emb|CAZ86807.1| conserved hypothetical protein; putative GGDEF domain; putative
           exported protein [Thiomonas sp. 3As]
          Length = 591

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 14/206 (6%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128
           +L  + + ++L+L Y     + +L     R+  L   D L+GLLN +    S     ++ 
Sbjct: 375 ALQWVLVFLALVLTYGLSVRVAQLRERATRLQDLLLKDPLTGLLNRNGLFDSGQRQLDRT 434

Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                 +++++ D+D  K+IND FGH  GD +I   S +L   FG      RLGG+EFA 
Sbjct: 435 QDSQAFVAVLWLDLDGLKRINDQFGHAAGDALIQATSARLREAFGPDAVCARLGGDEFAV 494

Query: 183 AALGSSEQEAAILANDL-RKIIENSQINIS-SGPSIHITISAGIA-ERCHKEPISTIIYR 239
                    +  LA DL R  +E  +   + SG     + S G+A    H + +  ++  
Sbjct: 495 VL---PNLPSPRLAEDLARHALERLRAPYALSGREFRASGSIGVALYPSHAQTLEELLRL 551

Query: 240 ADQALYVAKKSGRNRVVCF-SDIENN 264
           AD A+Y AK  GR+  V +  D+E +
Sbjct: 552 ADVAMYRAKALGRDTYVVWEPDMEAD 577


>gi|294666570|ref|ZP_06731810.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603645|gb|EFF47056.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 1000

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 1/122 (0%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+IND++GH VGD V++ + + L        F  R GGEEF  AA G    +A  
Sbjct: 878 DIDHFKRINDDYGHEVGDAVLSAIGEVLGEQDQAHCFAARHGGEEFLLAATGLDAVQARA 937

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           L   +R+ + + +++ + G ++  T S G+A          ++  AD+ LY AK+ GR+R
Sbjct: 938 LFERMRQRLADIEVD-AQGMTVRCTASMGMAMSEEAPSRRELLALADRRLYEAKRQGRDR 996

Query: 255 VV 256
           ++
Sbjct: 997 LI 998


>gi|294627172|ref|ZP_06705760.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598605|gb|EFF42754.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 1000

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 1/122 (0%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+IND++GH VGD V++ + + L        F  R GGEEF  AA G    +A  
Sbjct: 878 DIDHFKRINDDYGHEVGDAVLSAIGEVLGEQDQAHCFAARHGGEEFLLAATGLDAVQARA 937

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           L   +R+ + + +++ + G ++  T S G+A          ++  AD+ LY AK+ GR+R
Sbjct: 938 LFERMRQRLADIEVD-AQGMTVRCTASMGMAMSEEAPSRRELLALADRRLYEAKRQGRDR 996

Query: 255 VV 256
           ++
Sbjct: 997 LI 998


>gi|54295738|ref|YP_128153.1| hypothetical protein lpl2826 [Legionella pneumophila str. Lens]
 gi|53755570|emb|CAH17069.1| hypothetical protein lpl2826 [Legionella pneumophila str. Lens]
          Length = 314

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 12/157 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            LS  D L+GL N   F+  L SY        N+  +++FFD+D FKQ+ND  GH  GDK
Sbjct: 161 HLSLTDELTGLSNRRGFLK-LASYLFQKCQKDNKNFTLLFFDLDKFKQVNDQLGHAEGDK 219

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++   S  L+  F     + RLGG+EF     G +E+E   + + L+  +++ +   +  
Sbjct: 220 ILKIFSKSLLQNFRCYDVIARLGGDEFCVFCSGLNEKEVDNITHRLKDSLKSQE---TKD 276

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
            SI  ++ +    +     +  ++  AD  +Y  KKS
Sbjct: 277 YSIEFSVGSIEYNQAKHRTLDDMLAMADAKMYRDKKS 313


>gi|95929750|ref|ZP_01312491.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
 gi|95134046|gb|EAT15704.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
          Length = 388

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 17/188 (9%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
           +IS   + E   +  +I QL+  D L+GL N   F+  +          N+ L+++F D+
Sbjct: 202 FISIEDITEFHRAQKKIEQLAYYDALTGLPNRRLFMDRINQTVKRAERDNDHLALLFIDL 261

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAIL 195
           D FK +ND FGH  GD  +  ++ +L         V RL G+EF    +   +  +  ++
Sbjct: 262 DKFKSVNDRFGHSGGDDYLCEVATRLESAVRKSDTVARLSGDEFVVLLSTVHNGNDGELM 321

Query: 196 ANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSG 251
           A   +K+ E  Q  +   G  + I  S GIA  C+ +  +T   ++  AD A+Y AK  G
Sbjct: 322 A---KKLFEQLQPTVEIDGHDVSINASIGIA--CYPQDATTAEGLLQCADTAMYRAKHQG 376

Query: 252 RNRVVCFS 259
           +N    F+
Sbjct: 377 KNNFCSFT 384


>gi|218234510|ref|YP_002370125.1| sensory box/GGDEF family protein [Bacillus cereus B4264]
 gi|218162467|gb|ACK62459.1| sensory box/GGDEF family protein [Bacillus cereus B4264]
          Length = 814

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 375 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 434

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD ++  ++ +L     +   V R GG+EF         +++AI   +    I N
Sbjct: 435 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 494

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I  G  + IT S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 495 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 548


>gi|197337245|ref|YP_002157867.1| sensory transduction/ ggdef family protein [Vibrio fischeri MJ11]
 gi|197314497|gb|ACH63946.1| sensory transduction/ ggdef family protein [Vibrio fischeri MJ11]
          Length = 411

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 80/163 (49%), Gaps = 13/163 (7%)

Query: 107 DCLSGLLNHSAFISSLG----SYNEKLSI-VFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GL N  A    L     S++    I +  DID FK IND FGH  GD+VI   ++ 
Sbjct: 253 DYLTGLFNRRAITEKLNHNINSHDCCSEICLLIDIDNFKWINDQFGHASGDEVIVRFANL 312

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
              V G    VGR GGEEF       + Q+A  +A  + K  E      S    I IT S
Sbjct: 313 CKKVVGESGIVGRWGGEEFIVFLSNHNLQQAKAIATTILKKCELEIYQFSDHRHI-ITAS 371

Query: 222 AGIAE----RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            GI++     C+   I ++I  AD+ +Y AK+ G+N++V   D
Sbjct: 372 IGISQCQVTSCN---IESLIQTADKNMYQAKQQGKNQIVSPED 411


>gi|168216320|ref|ZP_02641945.1| sensory box protein/histidinol phosphate phosphatase family protein
           [Clostridium perfringens NCTC 8239]
 gi|182381791|gb|EDT79270.1| sensory box protein/histidinol phosphate phosphatase family protein
           [Clostridium perfringens NCTC 8239]
          Length = 624

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 20/170 (11%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           KE+ I  +R++     D L+ + N   F  S           ++K +++F D+D+FK+IN
Sbjct: 182 KEMEIELDRMANY---DELTNIPNMRLFFKSFRNTINESKKMDKKFAVLFIDLDWFKEIN 238

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILAND 198
           DN+GH VGD+V+     ++         +GR+GG+EFAA     S++E        + N 
Sbjct: 239 DNYGHDVGDEVLVCAVKRIYKCLRKGDILGRIGGDEFAAILKDISDREEIEKIVKDIQNS 298

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           LRK I+   +  +   SI ITI     E+     I  ++  +D+A+Y  K
Sbjct: 299 LRKRIKIGDVTCNIDSSIGITIFPEDGEK-----IEVLMRNSDKAMYKVK 343


>gi|168207960|ref|ZP_02633965.1| sensory box protein/histidinol phosphate phosphatase family protein
           [Clostridium perfringens E str. JGS1987]
 gi|170660745|gb|EDT13428.1| sensory box protein/histidinol phosphate phosphatase family protein
           [Clostridium perfringens E str. JGS1987]
          Length = 624

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 20/170 (11%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           KE+ I  +R++     D L+ + N   F  S           ++K +++F D+D+FK+IN
Sbjct: 182 KEMEIELDRMANY---DELTNIPNMRLFFKSFRNTINESKKMDKKFAVLFIDLDWFKEIN 238

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILAND 198
           DN+GH VGD+V+     ++         +GR+GG+EFAA     S++E        + N 
Sbjct: 239 DNYGHDVGDEVLVCAVKRIYKCLRKGDILGRIGGDEFAAILKDISDREEIEKIVKDIQNS 298

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           LRK I+   +  +   SI ITI     E+     I  ++  +D+A+Y  K
Sbjct: 299 LRKRIKIGDVTCNIDSSIGITIFPEDGEK-----IEVLMRNSDKAMYKVK 343


>gi|53804221|ref|YP_114116.1| sensory box protein [Methylococcus capsulatus str. Bath]
 gi|53757982|gb|AAU92273.1| sensory box protein/GGDEF domain protein [Methylococcus capsulatus
            str. Bath]
          Length = 1346

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 61/180 (33%), Positives = 90/180 (50%), Gaps = 23/180 (12%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYF 139
            S LKE   +   I  L+  D LS L N   ++     Y         E+L++VF D+D+F
Sbjct: 897  SSLKE---AEEHIHHLAYYDPLSALPNRR-YLMERAEYALALAERRKEELAVVFLDVDHF 952

Query: 140  KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALG--SSEQEAAIL 195
            K +ND+ GH VGD+++  ++ Q+         V RLGG+EFA     LG  +  Q A  +
Sbjct: 953  KDVNDSLGHQVGDELLVRVATQIKEFTRETDTVARLGGDEFALLLPDLGRDAVSQVADKI 1012

Query: 196  ANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
               LRK  E+      SG +  +T S GI+   H      T++  AD A+Y AK+ GRN+
Sbjct: 1013 LAALRKPFEH------SGQTFAVTGSIGISLYPHDGTDFETLLRNADTAMYHAKQQGRNQ 1066


>gi|312622266|ref|YP_004023879.1| diguanylate cyclase with gaf sensor [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202733|gb|ADQ46060.1| diguanylate cyclase with GAF sensor [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 557

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 22/178 (12%)

Query: 97  YNRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           Y ++  ++ +D L+G  N             +S G Y   +SI  FD+D FK++ND +GH
Sbjct: 382 YQQMRSMAMVDGLTGAFNRIYLYEVLEREIQASAGRY--PISIALFDVDNFKKLNDTYGH 439

Query: 149 PVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GDKV+     Q +V            V R GGEEF          EA  +   +R+ I
Sbjct: 440 LFGDKVL-----QTIVRIAKERVRKGDIVARYGGEEFIIVFNHLESNEAYKVVERIRRAI 494

Query: 204 ENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           E+  I   +     +T+S GIA    H + +  +I  AD A+Y AK SG+N  V ++ 
Sbjct: 495 ESETIE-DNLIQTRVTVSFGIASYPLHADNVKDLIKCADIAMYRAKSSGKNCTVVYNQ 551


>gi|303241532|ref|ZP_07328033.1| response regulator receiver modulated diguanylate cyclase
            [Acetivibrio cellulolyticus CD2]
 gi|302590950|gb|EFL60697.1| response regulator receiver modulated diguanylate cyclase
            [Acetivibrio cellulolyticus CD2]
          Length = 1225

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 93/208 (44%), Gaps = 45/208 (21%)

Query: 103  LSRIDCLSGLLN----HSAFISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            L+  D L+G+ N    +  FIS   +    ++SI+FFD+D+FK +ND +GH  GD V+  
Sbjct: 994  LATTDELTGINNKRNLNRLFISQFSTRKLREISIIFFDLDFFKSVNDTYGHQAGDCVLRE 1053

Query: 158  LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            +   L          GR GGEEF  A   +SE+ A  +A  L+K IE  +I I +  +I 
Sbjct: 1054 MGKILRDTLRPYDIFGRYGGEEFLIALPETSEENAIAVAKKLKKKIEECEI-IYNDITIK 1112

Query: 218  ITISAGI-----------AERC-------------------HKEPI-----STIIYRADQ 242
            IT S GI            E C                   H E       + +I  AD 
Sbjct: 1113 ITASFGIVSLIKNEQYVCKEICAANLKSIFEVDPKEVKNWDHVEEKKLQIPALLISMADM 1172

Query: 243  ALYVAKKSGRNRV----VCFSDIENNTC 266
            ALY AK +  N+     V  SD  NNTC
Sbjct: 1173 ALYEAKSTRCNKCGYSSVKKSDFHNNTC 1200


>gi|253699554|ref|YP_003020743.1| diguanylate cyclase with PAS/PAC sensor [Geobacter sp. M21]
 gi|251774404|gb|ACT16985.1| diguanylate cyclase with PAS/PAC sensor [Geobacter sp. M21]
          Length = 297

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 82/171 (47%), Gaps = 12/171 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           ++  +  ++ Q   +D L+G+ N      SL S       +     ++F D+D+FK +ND
Sbjct: 125 QILAALEQLKQDVLVDPLTGVGNRRLADMSLESRLHDWQTHRRPFGVLFMDVDHFKSVND 184

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+  L   +   F     V R GGEEF A    +     A +A  +R  + 
Sbjct: 185 RYGHKTGDEVLRMLGKTISNTFRKVDTVARWGGEEFVAILPATRLPALASIAERVRSAVA 244

Query: 205 NSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRN 253
            S + +  G  + +T+S G  IAE    +   +II RAD  +Y +K  GRN
Sbjct: 245 GSFL-MEEGQRVGVTLSIGGTIAE--TGDNAESIISRADAQMYRSKAGGRN 292


>gi|163749013|ref|ZP_02156264.1| extracellular solute-binding protein, family 3/GGDEF domain protein
           [Shewanella benthica KT99]
 gi|161331389|gb|EDQ02277.1| extracellular solute-binding protein, family 3/GGDEF domain protein
           [Shewanella benthica KT99]
          Length = 222

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 18/165 (10%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           + +L+ ID ++ + N   FI  L    +     LS++ FDID FK INDNFGH VGD +I
Sbjct: 58  LQRLASIDAMTDIYNRRYFIELLQQACDDNQTGLSLLLFDIDRFKLINDNFGHSVGDFII 117

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISS 212
             +   +           R+GGEEF     G + +++  LA  ++  + NS     NI+ 
Sbjct: 118 CEMVKTIKRQLPPEAVFARIGGEEFCVLIQGITAEQSQKLAKRVQSSVTNSHYCHDNINH 177

Query: 213 GPSIHITISAGIAERCHKEPI----STIIYRADQALYVAKKSGRN 253
                I+IS G+    + E +      +I RAD  +Y AK  GR+
Sbjct: 178 A----ISISLGVV---YSEDVYIDHQFLINRADHLMYTAKSMGRD 215


>gi|332297417|ref|YP_004439339.1| diguanylate cyclase [Treponema brennaborense DSM 12168]
 gi|332180520|gb|AEE16208.1| diguanylate cyclase [Treponema brennaborense DSM 12168]
          Length = 282

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 12/168 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            +  +L+ +D L+G  N      +L         Y ++ S++  DID FK++ND +GH V
Sbjct: 113 RKTEELAMLDGLTGAFNRRYMDVALKKELNRSTRYGKQFSLIILDIDDFKRLNDTYGHEV 172

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+   SD             R GGEEF      +    A +LA  +R  +E++ I+ 
Sbjct: 173 GDIVLQEFSDAARSAIREEDVFCRYGGEEFLVILPETDTSGAYVLAERIRHQLESAAIHE 232

Query: 211 SSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + G    IT SAG +    + +  + ++ R D+ALY AK +G+N+ V 
Sbjct: 233 TYG----ITFSAGTVTYPDYADNSADLLRRVDRALYQAKFNGKNQTVS 276


>gi|325917833|ref|ZP_08180012.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325535944|gb|EGD07761.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 954

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/159 (33%), Positives = 81/159 (50%), Gaps = 14/159 (8%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN S  + ++             L++V  D+D+FKQ+ND  GH VGD V+A + 
Sbjct: 790 DALTGLLNRSGILDAMTEELQHCAHAEHPLAVVLIDLDHFKQVNDEHGHLVGDAVLAKVG 849

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSI 216
            +L         VGR GGEE      G + Q      + LR I E   +   ++ +   +
Sbjct: 850 ARLTACLRDSDKVGRYGGEELLLLLPGMTRQS----QHRLRAIHEAISLPPYDVGAVRPL 905

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +T S G+A     +  +T++ RAD+ALY AK  GRNR+
Sbjct: 906 QVTCSVGVAWFRIGDTAATLLARADEALYRAKGHGRNRI 944


>gi|294010343|ref|YP_003543803.1| putative signal transduction protein [Sphingobium japonicum UT26S]
 gi|292673673|dbj|BAI95191.1| putative signal transduction protein [Sphingobium japonicum UT26S]
          Length = 686

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 22/188 (11%)

Query: 89  ILKELFISY----NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDID 137
           +LK+  + Y      +++++ +D L+G  N S F   LG  + +         + F DID
Sbjct: 247 VLKDRVVEYEAAERELTRIAFVDHLTGAPNRSHFYRELGDRSRRTDNAAFVRHLAFLDID 306

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
            F QIN+ +GH  GD V++ ++ +L  +   +     R GG+EF    LG   QE  +  
Sbjct: 307 GFHQINNAWGHDAGDHVLSEIARRLQDLALASEAIFCRYGGDEF---LLGFEAQE--VET 361

Query: 197 NDLRKIIENSQINISS-----GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
             L+ + E ++  +S+       ++ +T S G++       I   I  AD ALY AK+SG
Sbjct: 362 ERLQNLAEAARKAVSAPISYLAQTLRVTASVGLSADDADVVIERSIKSADLALYRAKESG 421

Query: 252 RNRVVCFS 259
           R+R V F 
Sbjct: 422 RDRAVLFE 429


>gi|262170750|ref|ZP_06038428.1| GGDEF family protein [Vibrio mimicus MB-451]
 gi|261891826|gb|EEY37812.1| GGDEF family protein [Vibrio mimicus MB-451]
          Length = 505

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 108/241 (44%), Gaps = 20/241 (8%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVE----NLSLVIISITISLLLGYISGSI--- 89
           +F ++V+++ N+++    + P      +L +       +   S  IS  +   + +I   
Sbjct: 265 LFFSSVMYVVNLWVVVTLIKPITAANQVLQQFKTSGGKMPDASTFISAEMKEFASTINHI 324

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQIND 144
           + +L  S   +   S  D L+ + N       L  Y        L +   DIDYFK  ND
Sbjct: 325 VTQLDESQQVLRWQSEHDPLTRISNRRYLEKQLKGYLSDRPCRYLVLYLIDIDYFKPFND 384

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KI 202
           NFGH  GD+ +  ++  L  + F     V R GGEEF       SE +A   A  +  K+
Sbjct: 385 NFGHLAGDEALCSVAQALQAIEFDGEKIVTRFGGEEFCVVLASDSELDAEQFAQQIHTKV 444

Query: 203 IENSQINISSGPSIHITISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            E +  N       ++T+S G    I+ R   +   ++ ++AD ALY AK+SGRNR V  
Sbjct: 445 AELAIANPQDSDFQYLTVSIGGVYAISPRM--DAYLSLFHQADMALYEAKESGRNRYVVR 502

Query: 259 S 259
           S
Sbjct: 503 S 503


>gi|262040014|ref|ZP_06013277.1| sensory box/GGDEF domain/EAL domain protein [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259042630|gb|EEW43638.1| sensory box/GGDEF domain/EAL domain protein [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 595

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 23/182 (12%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   R+   +  D L+G+ N  +F       ++ +  Y     ++ FD+D FK +N
Sbjct: 172 EKLQVQNRRLQYDAYHDSLTGMPNRLSFWQRLQEIVNQVRPYKGCAVVMLFDLDSFKDVN 231

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GDK++  L+ +L     T   + RLGG+EFA  +   +E+ A   AN +R+ I
Sbjct: 232 DTLGHDAGDKLLQDLASRLSFFRKTSEMLYRLGGDEFAMLSYDLTEEMALERANVIREKI 291

Query: 204 E------NSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
                  ++QINI +   I I IS G       E  +  +Y+ AD ALY AKK G   V 
Sbjct: 292 SQPYQIYDAQINIDA--CIGIVISDG-------ESRTDYLYKCADLALYEAKKEGSGHVQ 342

Query: 257 CF 258
            F
Sbjct: 343 IF 344


>gi|190891269|ref|YP_001977811.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190696548|gb|ACE90633.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 709

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 89/176 (50%), Gaps = 23/176 (13%)

Query: 98  NRISQLSRI-------DCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNF 146
            R+ QL++        D LSGLLN    +S L   ++  S    +   D+D FK +ND +
Sbjct: 281 RRLRQLAQAALYEAGHDSLSGLLNRQGLLSLLDELDDTASSPPRLYLVDLDGFKAVNDAW 340

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS---EQEAAILANDLRKII 203
           GH VGD +I  +S  L+      +   RLGG+EFA   +G +   E E AILA       
Sbjct: 341 GHAVGDDLIRLVSKALMACHPEVVAAARLGGDEFALVHVGPATCEEMERAILA----LFA 396

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           E  +I+   G +I +  S G A R    EP+  ++ RAD ALY AK +GR + V +
Sbjct: 397 EPFKID---GRTIEVGASIGAATRDGDIEPLE-LLRRADMALYRAKANGRGQAVEY 448


>gi|159901978|gb|ABX10709.1| GGDEF family membrane protein [uncultured planctomycete 8FN]
          Length = 239

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 21/183 (11%)

Query: 93  LFISYNRISQLSR-------IDCLSGLLNHSAFISSLGSY------------NEKLSIVF 133
           LF+   R + L R        D L+ L N  AF  +L +             +  + +  
Sbjct: 57  LFVENRRSADLIRDYEIQALTDPLTNLPNRRAFDGNLTALIEDEQKKKKPCNDRSIFLAI 116

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D+FK IND  GHP GD+V+ F++  +           RLGG+EF    +  S    A
Sbjct: 117 LDVDHFKPINDTKGHPTGDRVLRFVAQTIYSSIPDKCVAARLGGDEFGIVFVDVSPDWVA 176

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
                ++ +IE   +       +  TIS G+      +   +I  R D+ALY+AK  GRN
Sbjct: 177 GSLKSIKALIEKDSLQRKD--LVPTTISVGLTNLNSSDSYDSIYDRVDRALYLAKSEGRN 234

Query: 254 RVV 256
            + 
Sbjct: 235 SIT 237


>gi|126172549|ref|YP_001048698.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|125995754|gb|ABN59829.1| diguanylate cyclase [Shewanella baltica OS155]
          Length = 389

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPV 150
           ++I  L+  D L+GL N  A    L + +++        S++  D+D+FK+IND +GH  
Sbjct: 222 SKIRMLAERDQLTGLWNRRAMHKFLNNIHQRWLRDNVPYSMILLDLDHFKEINDQYGHDA 281

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD  +   +     V      + R GGEEF      +    A  +A  L ++++++   I
Sbjct: 282 GDLALLTAARLFGSVLRENDALCRHGGEEFLVILPATDAPAARAVAEKLHQVLKDNSF-I 340

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             G +I I  S G A          ++ +ADQA+Y AK  GR+R+
Sbjct: 341 WQGVTIKIHASLGYATIYQGCQPDKLLIQADQAMYRAKSEGRDRI 385


>gi|307721632|ref|YP_003892772.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
 gi|306979725|gb|ADN09760.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
          Length = 357

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 112/229 (48%), Gaps = 15/229 (6%)

Query: 39  IATVIFIANIFLF-YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           I T I+I  IF++ YIG          L     L+I S  +  L  Y       ++  + 
Sbjct: 125 ILTGIYIVTIFIYSYIGHKGAISSTDTLQVLFGLLIFS-GLVYLFEYSRKEAFSKMMDAI 183

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---SIVFF--DIDYFKQINDNFGHPVGD 152
           +++ +LS +D L+ L N   F++     NE+L   S++F+  DID FK  ND +GH  GD
Sbjct: 184 HQLEKLSYVDELTQLYNRH-FLNIHILNNEELNDKSVLFYIADIDNFKAYNDTYGHQKGD 242

Query: 153 KVIAFLSDQLVVVFG--TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-N 209
           + +  ++D      G     FV RLGGEEF          +  I   +  K++E+  I +
Sbjct: 243 EALVQIADATKKAIGDDNTHFVIRLGGEEFGGFIFDEENPQQRI--EEFFKVVESLSIEH 300

Query: 210 ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           I++  S   TISAG    E    +  S I    D+ALY AKK+G+N+V+
Sbjct: 301 INNEYSTTCTISAGAVYCENWDAKNFSKIYKITDEALYEAKKNGKNQVI 349


>gi|306840941|ref|ZP_07473683.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2]
 gi|306289064|gb|EFM60326.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2]
          Length = 389

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 9/164 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF--ISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGD 152
           N + +    D L+GLLN       + L  +  +     ++  DID+FK IND +GHPVGD
Sbjct: 210 NELQRERDSDPLTGLLNRRGLERQADLRLHTPQCLSYGVIIADIDHFKAINDAYGHPVGD 269

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-IS 211
           +V+   +  L         VGR+GGEEF     G++E E   L N L  ++     + + 
Sbjct: 270 QVLVEFARILSSASKDHAIVGRVGGEEFVLLVSGTAE-ECEALGNRLCGLVARHAFSKLP 328

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +G    +T S GIA     E +     RAD AL   K  GRNRV
Sbjct: 329 AGQK--VTSSFGIAMVRSGETLWETAARADLALMRVKNRGRNRV 370


>gi|269103399|ref|ZP_06156096.1| putative c-di-GMP phosphodiesterase A-related protein
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268163297|gb|EEZ41793.1| putative c-di-GMP phosphodiesterase A-related protein
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 674

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 15/173 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           I QL   D L+GL N   F   L  + ++   L +++ DID FK IND+ GH +GD+V+ 
Sbjct: 244 IEQLIHTDPLTGLYNRHGFTRQLEQHIQQQIPLLMLYLDIDNFKNINDSLGHNIGDRVLQ 303

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEF-----AAAALGSSEQEAAILANDLRKIIENSQINIS 211
            + ++L  +      +G LGG+EF      A +  S EQ    + N + +  +       
Sbjct: 304 EIGNRLSHLLPKHAIIGHLGGDEFCVLLPQADSEFSGEQLCQNVINQINQPFDLHHF--- 360

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDIEN 263
                H+  S G+ +       + I+ + AD A+Y AK  GRNR + F D  N
Sbjct: 361 ---RKHLACSIGLVQYPGDGNDARILLQNADTAMYEAKHRGRNRFIKFDDAMN 410


>gi|171058506|ref|YP_001790855.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Leptothrix cholodnii SP-6]
 gi|170775951|gb|ACB34090.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptothrix cholodnii SP-6]
          Length = 1069

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 84/172 (48%), Gaps = 8/172 (4%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
           S  RI  L+  D L+ L N +  I  L           +K++++F D+D FK IND+ GH
Sbjct: 617 SERRIRFLAEHDVLTELPNRALCIERLRLALQQARRTGQKVAVLFIDLDRFKNINDSLGH 676

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD ++  ++ +LV        V RLGG+EF     G ++ E      + R I    Q 
Sbjct: 677 HVGDGLLRSVAQRLVDGVRAGDTVSRLGGDEFVVVLNGLADIEEVAHVVEQRLIPRVRQP 736

Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +   G  IH++ S GI+      + I  ++ +AD A+Y AK  GRN    F+
Sbjct: 737 HGVQGAEIHVSCSVGISVFPDDAQDIDELMRQADVAMYQAKAQGRNGAQFFT 788


>gi|114776516|ref|ZP_01451561.1| Hypothetical 918 kDa protein Y4LL [Mariprofundus ferrooxydans PV-1]
 gi|114553346|gb|EAU55744.1| Hypothetical 918 kDa protein Y4LL [Mariprofundus ferrooxydans PV-1]
          Length = 702

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 86/168 (51%), Gaps = 17/168 (10%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL------GSYN-EKLSIVFFDIDYFKQINDNFGHPVG 151
           R+S ++  D L+GL N + FI  L       S N +K+ ++F DID FK +NDN GH VG
Sbjct: 526 RLSHMAHHDQLTGLPNRTLFIDRLEHALAHASRNKDKVGLMFIDIDGFKAVNDNHGHDVG 585

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFA---AAALGSSE--QEAAILANDLRKIIENS 206
           D ++  +++ L  +      V R+GG+EF       L  +   Q A  + N        +
Sbjct: 586 DALLCIIANSLTELVRDADTVARIGGDEFVIILEKLLSDTAIIQVAEKILNRFSVPTLAA 645

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            I    G SI ITI +  +  C++     I+ +AD A+Y+AK SG+ +
Sbjct: 646 GIACDIGCSIGITIGSDDSSSCNE-----IVKQADTAMYLAKTSGKQQ 688


>gi|330967776|gb|EGH68036.1| diguanylate cyclase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 501

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 10/174 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L +S  ++  L+  D L+GL N   F  +L     +       L ++  DIDYFK+ N
Sbjct: 322 QQLILSNRQLELLAMKDALTGLANRRCFDQTLTKEARRAQREGTTLVLLMIDIDYFKRFN 381

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD  +  + + L      P   V R GGEE       +  Q A ++A  +   
Sbjct: 382 DTFGHVAGDVCLRAVGEILEDSVKRPSDLVARYGGEEMGIIMPNTDGQGATVVAQLIIDR 441

Query: 203 IENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +E   I  +S P   +++S GI  A     + +   I  AD+ALY AK  GRN+
Sbjct: 442 LERKNIRHNSSPFGRVSVSIGIIAAAGSQLDNLMGFIQGADRALYNAKALGRNQ 495


>gi|220935625|ref|YP_002514524.1| response regulator receiver modulated diguanylate cyclase
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996935|gb|ACL73537.1| response regulator receiver modulated diguanylate cyclase
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 335

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 82/180 (45%), Gaps = 22/180 (12%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDN 145
           L  +  ++  LS  D L+GL N  A    L +           + +   D+D+FKQIND 
Sbjct: 161 LAAANRQLEYLSTTDPLTGLPNRRALNKRLEAVLLETQGRGGGMCVGLLDVDHFKQINDT 220

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH VGD+V+  LS +L +       V RLGGEEFA             + N    I + 
Sbjct: 221 YGHDVGDEVLTTLSKRLRLALRPMDMVARLGGEEFALVMHFHD------VDNCNPGIFQR 274

Query: 206 SQINISSGP----SIHITISAGIAERC--HKEPISTI---IYRADQALYVAKKSGRNRVV 256
               +S  P       I ++A I   C  H E + TI   +  AD+ LY AK  GRNRVV
Sbjct: 275 VLDTVSKDPFPTSEGQIPVTASIGACCYRHGEQMVTIQGMLKIADENLYRAKAEGRNRVV 334


>gi|157375517|ref|YP_001474117.1| GGDEF family protein [Shewanella sediminis HAW-EB3]
 gi|157317891|gb|ABV36989.1| conserved hypothetical GGDEF family protein [Shewanella sediminis
           HAW-EB3]
          Length = 413

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 119/272 (43%), Gaps = 28/272 (10%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63
           S  D   +W    K L + SP   +I   I  S FI   IF A I LF  G      + Y
Sbjct: 144 SATDVNWLWQSFLKPLPTLSPSPLII---ILLSFFIT--IFSALILLFR-GHNSDQAV-Y 196

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISY-NRISQLSRIDCLSGLLNHSAFISSL 122
           I +   S++ +S   +L+    +      L IS  N   +L+ ID L+ +    +    +
Sbjct: 197 ITLLFTSVMFLSFNQALMPALTASMAAILLLISIINSSHELAFIDQLTEVPGRRSLEIEI 256

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
              +   +I   DID+FK  ND FGH  GD+V+  ++ QL+        + R GGEEF  
Sbjct: 257 KHLSGLYTIAMIDIDHFKHFNDTFGHRTGDEVLRLVA-QLMNQNKGRGRIFRYGGEEFTI 315

Query: 183 AALGSSEQEAAILANDLRKIIENSQINI---SSGP----------------SIHITISAG 223
              G +  +     N LR  +    + I   +S P                S++ITIS G
Sbjct: 316 IFKGKNANQCMPYLNSLRTRVAEYDLKIRDHTSRPVMGVGLKAEMEKANNESVNITISIG 375

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +A+   +     ++  AD+ALY AK  GRNRV
Sbjct: 376 VADSVSETIPENVMKAADKALYRAKNGGRNRV 407


>gi|148978358|ref|ZP_01814863.1| hypothetical protein VSWAT3_00893 [Vibrionales bacterium SWAT-3]
 gi|145962517|gb|EDK27795.1| hypothetical protein VSWAT3_00893 [Vibrionales bacterium SWAT-3]
          Length = 558

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 12/164 (7%)

Query: 107 DCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   L  ++       + LS++  D+D+FK+ NDNFGH  GD V+  +S
Sbjct: 378 DPLTGLFNRRFFEQKLEEHSMNSATSEQPLSLLMLDLDHFKRFNDNFGHDAGDFVLKEIS 437

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L           RLGGEE A      + Q+A      L   + +  +         + 
Sbjct: 438 ALLKQSVSEDEIACRLGGEELAVLLPHYTMQQATEFGQTLCDAVRSMHLEHKGLSLGQLG 497

Query: 220 ISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRNRVVCFSD 260
           +S G+A   + +P S   +++  AD ALY+AK  GR+RVV + +
Sbjct: 498 VSIGVA--TYPKPASDTESLVKMADNALYMAKDMGRSRVVNYDE 539


>gi|158319674|ref|YP_001512181.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alkaliphilus oremlandii OhILAs]
 gi|158139873|gb|ABW18185.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alkaliphilus oremlandii OhILAs]
          Length = 703

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 23/177 (12%)

Query: 98  NRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           N++  ++  D L+GL N           +    +  +K+++++ DID FK IND  GH +
Sbjct: 268 NKLHTMAYYDTLTGLYNKEMLKEEMEKLLREAETEKKKMALIYLDIDNFKHINDILGHEI 327

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE------QEAAILANDLRKIIE 204
           GDK+I ++++ L      P  V RLGG+EF A  LG  +      QE    ++ LR+   
Sbjct: 328 GDKMITYIANILSHQVKAPNLVARLGGDEF-AVVLGEIKTIEDVLQEIEKFSSYLRRPWN 386

Query: 205 -NSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            N Q          I+ S G+A    H + ++T++  AD A++  K++GR+ V  ++
Sbjct: 387 LNKQ-------EFFISTSIGVALYPDHGKTLATLMQNADTAMFHIKENGRDGVGIYA 436


>gi|91775551|ref|YP_545307.1| diguanylate cyclase [Methylobacillus flagellatus KT]
 gi|91709538|gb|ABE49466.1| diguanylate cyclase (GGDEF domain) [Methylobacillus flagellatus KT]
          Length = 394

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 15/164 (9%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            L+  D L+ + N  A ++ LG         Y   +SI   D+D+FK IND +GH  GDK
Sbjct: 222 HLATHDELTKIYNRRALVN-LGRREIDLAHRYKRPISIFMIDLDHFKLINDTYGHDAGDK 280

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  ++  L         +GR GGEE       ++++EA  L   L + + N  +   + 
Sbjct: 281 VLRSVALTLSNTCRNTDIIGRYGGEELCIVCPHTTKEEATALGERLLEALRN--LRHPAC 338

Query: 214 PSIHITISAGI-AERCHKEPIS---TIIYRADQALYVAKKSGRN 253
            + H+T S G+     H +  +    +++RAD ALY AK +GRN
Sbjct: 339 DNRHVTCSIGLYTWNPHIDLAANWEAMLHRADTALYAAKAAGRN 382


>gi|78357561|ref|YP_389010.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219966|gb|ABB39315.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 751

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 9/181 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDI 136
           Y++   +        R+ + +  D L+G+ N         A ++    +   L+ +  DI
Sbjct: 567 YVTARDISRQKAHERRLHEQASTDELTGIFNRRRVLDIGKAEMARSRRFGRPLACLMIDI 626

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FKQIND +GH  GD V+  ++  L         +GRLGGEEF      +  + A   A
Sbjct: 627 DHFKQINDTYGHVAGDAVLRGVTATLSAGLRQSDTLGRLGGEEFIVFMPETDAEGAMHTA 686

Query: 197 NDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
             LR+ +E S + +   G S  IT+S G+     +   +   I  AD ALY AK++GRNR
Sbjct: 687 ERLRQAVEQSSVLMDGEGASPGITVSLGVTVLAPETASLDAFIAAADAALYRAKENGRNR 746

Query: 255 V 255
           V
Sbjct: 747 V 747


>gi|113970467|ref|YP_734260.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-4]
 gi|113885151|gb|ABI39203.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-4]
          Length = 752

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 11/163 (6%)

Query: 107 DCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N +A         S  S     S +  D+D FKQ+ND +GH  GD ++  + +
Sbjct: 318 DSLTGLANRNALFRQIQELISADSLTPGFSFMLMDLDNFKQVNDTYGHDKGDALLVQVVE 377

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL-RKIIENSQINISSGPSIHI 218
           ++           RLGG+EFA    G  +++E + LA  + R++    ++++  G  ++ 
Sbjct: 378 EIKTCLNDQAVFSRLGGDEFALLLPGIVTQRELSQLAEKINRQVYRRYELSLDKG--VYS 435

Query: 219 TISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++S GIA        +  ++  ADQA+Y++K +GRNR   F++
Sbjct: 436 SVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTE 478


>gi|293395763|ref|ZP_06640045.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291421700|gb|EFE94947.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 378

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 97/202 (48%), Gaps = 15/202 (7%)

Query: 68  NLSLVIISITISLLL---GYISGSILKELFISYN-------RISQLSRIDCLSGLLNHSA 117
           N+  VII + ++ +L    YI      E +  Y        R+  ++  D L+   N  A
Sbjct: 174 NMRFVIIWLLLAFILLYGRYILLHWFNENWQRYQDNRLLISRLETMANQDALTETANRRA 233

Query: 118 FISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVG 173
               L    E+    +++  D+D+FK+ ND++GHP GD+ +  ++  L     +P   V 
Sbjct: 234 MEHHLAVAAERQRPFALIMIDVDFFKRYNDHYGHPAGDRCLRDIAAILKSSVRSPEDVVA 293

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEP 232
           R GGEEF      +S   A ++A  +++ I    + + +S     +++S G+A     + 
Sbjct: 294 RYGGEEFLLLLFDASLAGATVVAERIQQNIRRQGVPHAASEVGEVVSVSMGLAASSGNKS 353

Query: 233 ISTIIYRADQALYVAKKSGRNR 254
            + ++  AD ALY AK+ GR+R
Sbjct: 354 DAQLLAEADAALYRAKQGGRDR 375


>gi|289647598|ref|ZP_06478941.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 712

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 18/187 (9%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           ++++  +  S++++L   Y ++ + +  D L+GLLN      ++          ++ L +
Sbjct: 254 AMVMTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLFQAVEGMLLRKEQTDKYLVV 310

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF      L   E
Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247
           Q A I    + ++    Q++   G  I +  S GIA    C    +  ++  AD A+Y A
Sbjct: 371 QAAKIAEKLIERVSGRRQVD---GVDITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 426

Query: 248 KKSGRNR 254
           K++GR +
Sbjct: 427 KRAGRQQ 433


>gi|262275053|ref|ZP_06052864.1| diguanylate cyclase [Grimontia hollisae CIP 101886]
 gi|262221616|gb|EEY72930.1| diguanylate cyclase [Grimontia hollisae CIP 101886]
          Length = 333

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 20/188 (10%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI---------------VFF 134
           L +++ +Y +I   S  D L+GL N     + +    ++  I                 F
Sbjct: 132 LAKIYENYQKIISASERDGLTGLYNRKVLTTKIDLLLDRFLIQGTSIIDDPTHHHWVCIF 191

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FKQIND  GH  GD+VI  ++  +  +F     + R GG+EF       S +E   
Sbjct: 192 DIDHFKQINDALGHVFGDEVILLVTAMMKKIFHDEDILFRYGGDEFVVIMHPQSREEMEA 251

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRN 253
              +    +         G +  ++IS G A    +E  + T++  ADQALY AK++GRN
Sbjct: 252 TVCEFIDAVNKR----DYGQAKEVSISMGAAAISDQELNAITVLGFADQALYKAKQNGRN 307

Query: 254 RVVCFSDI 261
           +V  + D+
Sbjct: 308 QVAFYEDL 315


>gi|241206039|ref|YP_002977135.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240859929|gb|ACS57596.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 605

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 24/222 (10%)

Query: 51  FYI---GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107
           FY+   GL  F G E+ +  ++ L+   +    ++       L+E   S  RI  ++  D
Sbjct: 122 FYVDAEGLPSFIGAEWDVTADI-LLNAELARQKVVAEARALALEE---SNARIEHVADHD 177

Query: 108 CLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
            L+GL N       L           L+++  D+D FKQIND+ GH  GD V+   + ++
Sbjct: 178 YLTGLPNRRLLDKRLAELPADKSITTLAVLHLDLDQFKQINDSHGHAAGDAVLRAAALRI 237

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND----LRKIIENSQINISSGPSIH 217
                    V R+GG+EF    +  ++  E  ++  D    LRK I   Q  + SG SI 
Sbjct: 238 TAAIPANGVVARVGGDEFVIVLVNFADLTELKLITEDVQRRLRKKIRFGQEMLQSGASIG 297

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++ S     R        ++  +D ALY AKK GRNRV  F+
Sbjct: 298 VSWSGDRRAR-------NLLAESDLALYQAKKLGRNRVEFFT 332


>gi|240172640|ref|ZP_04751299.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Mycobacterium kansasii ATCC 12478]
          Length = 1328

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 87/171 (50%), Gaps = 18/171 (10%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFFDIDYFKQINDNFGHPVGD 152
           ++Q +  D L+GL N + F++ L     + +++   ++++  D+D FKQ+ND  GHP GD
Sbjct: 341 VAQEAFRDSLTGLANRTRFLNRLERAIAARDQRPTPIAVLCLDLDNFKQVNDALGHPAGD 400

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-----ILANDLRKIIENSQ 207
           +++  ++  L         + RLGG+EFA    GS E+  A     + A D   +I+   
Sbjct: 401 ELLVRVAGLLTASLDETATIARLGGDEFAVLIEGSVEETQAAAHRVLDAFDAAIVIDGVP 460

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + +   PSI  T++      C    +  ++  AD A+Y AK+ G  R+  F
Sbjct: 461 VTVR--PSIGYTVATA-GSSC---TVDELLRHADLAMYAAKREGGERIRSF 505


>gi|170690318|ref|ZP_02881485.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia graminis C4D1M]
 gi|170144753|gb|EDT12914.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia graminis C4D1M]
          Length = 553

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 90/177 (50%), Gaps = 18/177 (10%)

Query: 89  ILKELFISYNRISQLSRI---DCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQI 142
           + +++ +   R++ L R+   D L+GL N SA +    +L S +   +++F D+D FK +
Sbjct: 109 VSEDITVEQERLAALDRLAHTDGLTGLANRSALVRQMKTLCSCDAAFALMFIDLDRFKVL 168

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRK 201
           ND  GH   D+++  +++ +         V RLGG+EFA    G +++   A LA  L  
Sbjct: 169 NDTLGHTAADRLLKNIAETIQAALPDDACVARLGGDEFAVILNGEADKGRLATLARTLLS 228

Query: 202 IIENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRN 253
              +     S+ P   +T S GI+      R H+    +++  AD A+Y AKK GRN
Sbjct: 229 AFSSGVPADSADP--FVTASIGISVYPENGRDHE----SLLTSADIAMYAAKKGGRN 279


>gi|160873423|ref|YP_001552739.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160858945|gb|ABX47479.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|315265652|gb|ADT92505.1| diguanylate cyclase [Shewanella baltica OS678]
          Length = 389

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPV 150
           ++I  L+  D L+GL N  A    L + +++        S++  D+D+FK+IND +GH  
Sbjct: 222 SKIRMLAERDQLTGLWNRRAMHKFLNNIHQRWLRDNVPYSMILLDLDHFKEINDQYGHDA 281

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD  +   +     V      + R GGEEF      +    A  +A  L ++++++   I
Sbjct: 282 GDLALLTAARLFGSVLRENDALCRHGGEEFLVILPATDAPAARAVAEKLHQVLKDNSF-I 340

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             G +I I  S G A          ++ +ADQA+Y AK  GR+R+
Sbjct: 341 WQGVTIKIHASLGYATIYQGCQPDKLLIQADQAMYRAKSEGRDRI 385


>gi|108763957|ref|YP_633516.1| response regulator/GGDEF domain-containing protein [Myxococcus
           xanthus DK 1622]
 gi|108467837|gb|ABF93022.1| response regulator/GGDEF domain protein [Myxococcus xanthus DK
           1622]
          Length = 320

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 90/172 (52%), Gaps = 11/172 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDN 145
           L    + + +LS  D L+GL NH  F   L         Y++ LS++  D+DYFK+IND 
Sbjct: 138 LAAQVSELQRLSSTDGLTGLHNHRHFQERLREEFRRAQRYDDSLSLILLDLDYFKEINDK 197

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD V+  ++  L         V R GGEEFA     +    A  +A  +R+ +  
Sbjct: 198 YGHSAGDGVLREVAAALTRGVRETDLVARYGGEEFAVLLPRTHLTGALTVAERVRRELRA 257

Query: 206 SQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255
            ++ +S   S+ +T S G++   H+  ++   ++  AD+ALY AK+ GR+R+
Sbjct: 258 LRLEVSD--SLQVTASLGVSSFPHRTVLTPEQLLLTADEALYQAKRDGRDRI 307


>gi|312793688|ref|YP_004026611.1| diguanylate cyclase with gaf sensor [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312875807|ref|ZP_07735797.1| diguanylate cyclase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797288|gb|EFR13627.1| diguanylate cyclase [Caldicellulosiruptor lactoaceticus 6A]
 gi|312180828|gb|ADQ40998.1| diguanylate cyclase with GAF sensor [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 557

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 97  YNRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           Y ++  ++ +D L+G  N             +S G Y   +SI  FD+D FK++ND +GH
Sbjct: 382 YQQMRSMAMVDGLTGAFNRIYLYEVLEREIQASAGRY--PVSIALFDVDNFKKLNDTYGH 439

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GDKV+  +             V R GGEEF          EA  +   +R+ IE+  I
Sbjct: 440 LFGDKVLQTIVRIAREKVRKGDIVARYGGEEFIIVFNHLESNEAYKVVERIRRAIESETI 499

Query: 209 NISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              +     +T+S GIA    H + +  +I  AD A+Y AK SG+N  V ++
Sbjct: 500 E-DNLIQTRVTVSFGIASYPLHADNVKDLIKCADVAMYRAKSSGKNCTVVYN 550


>gi|329910860|ref|ZP_08275395.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327546065|gb|EGF31137.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 457

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 8/162 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S ++  D L+G+ N   F+S           +   L+++  DID+FKQIND++GH  GD
Sbjct: 290 LSHMANTDTLAGIANRRHFMSRFEVELKHAQRHGTGLAVLILDIDHFKQINDSYGHATGD 349

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + I   +     V     F+ R GG+EFA     +S + A + A  LR+ I   +I  ++
Sbjct: 350 QAILACAHACQAVLRDIDFLSRFGGDEFAILLSDTSVEGAQVAAERLRQEILQCRIAGNA 409

Query: 213 GPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253
           G  + +T S G+A      P +   + +AD ALY AK  GRN
Sbjct: 410 GVQVTMTASIGLAMLDAGTPDVEAALAKADAALYRAKSRGRN 451


>gi|296165035|ref|ZP_06847590.1| diguanylate cyclase/phosphodiesterase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295899683|gb|EFG79134.1| diguanylate cyclase/phosphodiesterase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 769

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 107/226 (47%), Gaps = 13/226 (5%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           F+ +   +    L   G+ P +   Y     L+L ++  T  ++   +   + ++L  + 
Sbjct: 294 FMGSTALLTFQVLVGRGIDPLFASTY-----LALALLVATRYVVAMRVQRMLTEQLVAAK 348

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            R++  +  D L+GL N       L          ++F DID FK++ND FGH  GD+++
Sbjct: 349 RRLAYQAHHDALTGLPNRLLLAERLDEAIRGGPFVLIFVDIDDFKEVNDRFGHAAGDELL 408

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +S +L    G    + R+GG+EFA    G+ +    ++A+ LR +   S  ++  G S
Sbjct: 409 CAISARLQECLGQSDTLARIGGDEFAILTAGAVDAP-EMVADQLR-VALRSPFSV-HGTS 465

Query: 216 IHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCF 258
           + +  S G+    H +   T   ++ +AD ++Y  K+ G++  V +
Sbjct: 466 VRVRASMGLVSPGHHDGPPTSDDLLRQADISMYTGKRLGKDTAVVY 511


>gi|217971509|ref|YP_002356260.1| diguanylate cyclase [Shewanella baltica OS223]
 gi|217496644|gb|ACK44837.1| diguanylate cyclase [Shewanella baltica OS223]
          Length = 389

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPV 150
           ++I  L+  D L+GL N  A    L + +++        S++  D+D+FK+IND +GH  
Sbjct: 222 SKIRMLAERDQLTGLWNRRAMHKFLNNIHQRWLRDNVPYSMILLDLDHFKEINDQYGHDA 281

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD  +   +     V      + R GGEEF      +    A  +A  L ++++++   I
Sbjct: 282 GDLALLTAARLFGSVLRENDALCRHGGEEFLVILPATDAPAARAVAEKLHQVLKDNSF-I 340

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             G +I I  S G A          ++ +ADQA+Y AK  GR+R+
Sbjct: 341 WQGVTIKIHASLGYATIYQGCQPDKLLIQADQAMYRAKSEGRDRI 385


>gi|94264442|ref|ZP_01288231.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|93455132|gb|EAT05354.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
          Length = 833

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 91/174 (52%), Gaps = 7/174 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           E    Y+ ++ L   D L+  LNH A + ++     +L++ + D+D FK IND  GH VG
Sbjct: 398 ERIAHYDTLTGLPNRDLLADRLNH-AMVQAI-RRQTRLAVAYLDLDGFKAINDTHGHDVG 455

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++  L+ ++         +GRLGG+EF A      + E  +    L++++  + + +S
Sbjct: 456 DFLLRTLAGRMQQTLRESDTLGRLGGDEFVAIFQDLPDNETCLPL--LQRLLNAAAMPVS 513

Query: 212 SGPSI-HITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIE 262
              +I  ++ S G+      E I    ++ +ADQA+Y AK++G+NR   F  ++
Sbjct: 514 YQETILQVSASLGVTFFPQSEKIDADQLLRQADQAMYQAKQTGKNRYHLFDAVQ 567


>gi|90579858|ref|ZP_01235666.1| putative transcriptional regulator [Vibrio angustum S14]
 gi|90438743|gb|EAS63926.1| putative transcriptional regulator [Vibrio angustum S14]
          Length = 405

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 7/161 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISS--LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +++ +++  D L+GL N   F +     + NE L+I   DID+FK++ND +GH  GD V+
Sbjct: 249 DKLYRMANQDALTGLWNRRYFFTHNCCQTENESLNIAMIDIDFFKKVNDTYGHDGGDAVL 308

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +S +++        V R GGEEF     G  +   + L   +R+ IE+  I       
Sbjct: 309 ISIS-KIIDAHFPESIVARFGGEEFCIQHCGHFQSFLSTLEL-IRQRIESITIPYLE-QQ 365

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           I ITIS G       E +  +I +AD  LY AK++GRN++V
Sbjct: 366 ISITISIGATTGL--ESLEKLIKQADDNLYTAKENGRNQLV 404


>gi|74317945|ref|YP_315685.1| diguanylate cyclase [Thiobacillus denitrificans ATCC 25259]
 gi|74057440|gb|AAZ97880.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 253

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 9/167 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           + + +LS  D L+GL N   F ++L           + + ++  DID+FKQIND  GH V
Sbjct: 48  DELCELSLKDPLTGLGNRRQFRAALERAIEIVARSGDSVLLLLLDIDHFKQINDAHGHLV 107

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  ++  L         V R GGEEFA             +A  +R  IE   + +
Sbjct: 108 GDQVLQAVARALAESIRPMDTVARYGGEEFAMILPNCLPACGHAVAERIRHRIEALSVQV 167

Query: 211 SSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   ++ +T S G   A +  +  +   + RADQ LY AK  GRN V
Sbjct: 168 APHTALRVTASIGGAYAPQWVRSTVDLWVERADQQLYRAKADGRNLV 214


>gi|81300191|ref|YP_400399.1| diguanylate cyclase/phosphodiesterase [Synechococcus elongatus PCC
           7942]
 gi|81169072|gb|ABB57412.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Synechococcus elongatus PCC 7942]
          Length = 889

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 3/134 (2%)

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           E L+++F D+D FK INDNFGH VGD+V+  ++ ++         + RL G+EF      
Sbjct: 496 EMLAVIFIDLDRFKDINDNFGHEVGDRVLVEVAQRIRQSVRQSDLIARLSGDEFVVILPN 555

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALY 245
           +  Q AA LA  L++ I    I I    SI +T S GI+      + +  +I +AD A+Y
Sbjct: 556 TDAQGAATLAQKLQQQI-TPPIAIGD-RSIQLTTSLGISLFPVDGDDLEILIKKADTAMY 613

Query: 246 VAKKSGRNRVVCFS 259
             K+ GR+    F+
Sbjct: 614 SIKEGGRDAFSFFT 627


>gi|296161827|ref|ZP_06844629.1| diguanylate cyclase [Burkholderia sp. Ch1-1]
 gi|295887991|gb|EFG67807.1| diguanylate cyclase [Burkholderia sp. Ch1-1]
          Length = 367

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 81/170 (47%), Gaps = 19/170 (11%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV---IA 156
           D L+GL N      +L    ++       LS++  DID+FKQIND FGH  GD+V   +A
Sbjct: 201 DALTGLYNRRYLNDALQREFDRSTQTGCPLSVLLLDIDHFKQINDRFGHSTGDRVLQNVA 260

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEF--AAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
            L  Q +   GT     R GGEEF      +GSSE          R  + +  +N   G 
Sbjct: 261 ALLAQDMDPGGTAF---RYGGEEFLILLPRMGSSEAWGRAECYRTRMPV-SVVVNEERGN 316

Query: 215 SIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
              +T+S GIA      E    +I RAD ALY AK  GR+R   F + E+
Sbjct: 317 P--VTLSIGIASTADGAESPQQLIDRADDALYQAKLGGRDRCSVFKNAED 364


>gi|291619602|ref|YP_003522344.1| YciR [Pantoea ananatis LMG 20103]
 gi|291154632|gb|ADD79216.1| YciR [Pantoea ananatis LMG 20103]
          Length = 685

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 13/170 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R + L+  D L+GLLN    +  L +    +E  +++  DID FK +ND  GH  GD ++
Sbjct: 269 RANHLALHDPLTGLLNRRGLMPELETLLDGDEPFAVMVSDIDRFKSVNDVLGHAAGDTLL 328

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQI----NI 210
             +S +L+ V      + R GG+EF A   G SS ++A+  A+ L  +++   +     +
Sbjct: 329 IEVSARLLSVLRPGDILARTGGDEFVAVLPGISSAEDASETASRLTMVLKEPFMLKGRKV 388

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +SG S  + +  G A         +++  AD ALY AK +GR   V F+D
Sbjct: 389 TSGCSFGVCLFPGYARDAE-----SMLSAADIALYAAKSAGRKGWVIFTD 433


>gi|134295938|ref|YP_001119673.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
 gi|134139095|gb|ABO54838.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
          Length = 466

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFK 140
           S L+EL  +  ++  ++  D ++G  N   FI+ +    ++         ++  D+D FK
Sbjct: 289 SALQELRRTNQKLEYMAATDPMTGASNRRQFIAQVEREIQRAERDGTPFCLLALDLDNFK 348

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IN  +GH +GD+V+  +  Q +        + R+GGEEF A       + A + A  +R
Sbjct: 349 NINGAYGHQIGDEVLRGVVRQCLEAIRPTGALARVGGEEFMALLPDMPLEGARMTAERVR 408

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             I +S   +     + +T+S G+A+       +  ++   D+ LY AK+ GRNRVV 
Sbjct: 409 SSIASSPFGLDF-KRVQVTVSVGVAQYGVDGSTVDALLRVVDERLYQAKRDGRNRVVA 465


>gi|104784028|ref|YP_610526.1| diguanylate cyclase [Pseudomonas entomophila L48]
 gi|95113015|emb|CAK17743.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           entomophila L48]
          Length = 400

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 86/180 (47%), Gaps = 23/180 (12%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           Q++  D L+GL    A    +        I   D+D+FK+ ND  GH VGD+V+  ++ +
Sbjct: 213 QMAFRDELTGLPGRRALNERMQRLGRNYVIAMTDVDHFKKFNDTHGHDVGDQVLRLVASR 272

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---SSGP---- 214
           L  V        R GGEEFA    G + +E       +R++I N  I +   +S P    
Sbjct: 273 LSKV-TGGGRAYRYGGEEFALVFAGKTAEECLPHLEAVREMIANYAIQLRDQNSRPNDDS 331

Query: 215 ------------SIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                       ++ +TIS G+AER   H+ P   ++  ADQALY AK +GRN V+ F  
Sbjct: 332 AGRQRRGGGASSTVSVTISIGVAERQADHRNP-DEVLKSADQALYSAKGAGRNCVMTFGQ 390


>gi|84393367|ref|ZP_00992126.1| putative GGDEF family protein [Vibrio splendidus 12B01]
 gi|84375976|gb|EAP92865.1| putative GGDEF family protein [Vibrio splendidus 12B01]
          Length = 488

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 102/208 (49%), Gaps = 24/208 (11%)

Query: 61  LEYILVENLSLVIISITISL----LLGYISGSILKELFISYNRISQLSRIDCLSGLLNH- 115
           +E+ LV     +I++I + L    +  Y++ +I +  F       +L+  D ++GLLN  
Sbjct: 292 VEHFLVYEKDSLIVAIIVYLFSVTIFFYVNSNIERGYF------KELAAKDPMTGLLNRR 345

Query: 116 --SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              AF  S+  +++  ++  FDID FK IND  GH  GD VI ++S Q+     +     
Sbjct: 346 GLEAFWRSV-EHDQLFALTVFDIDDFKSINDTHGHDKGDDVIRYMSRQISNSVRSSDVAA 404

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRK--IIENSQINISSGPSIHITISAG---IAERC 228
           R GGEEF     G  ++E  I   +  K  +  NS   + +G     T+S G   +    
Sbjct: 405 RFGGEEFVVYMKG-DDRETLIRTLERVKNAVCANSADIVPNG----FTVSGGVCIVETEQ 459

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256
           +K     I   AD+ LYVAK +G++R+V
Sbjct: 460 NKLNFEEIFKYADEKLYVAKTTGKDRIV 487


>gi|300867789|ref|ZP_07112432.1| GGDEF domain protein [Oscillatoria sp. PCC 6506]
 gi|300334206|emb|CBN57604.1| GGDEF domain protein [Oscillatoria sp. PCC 6506]
          Length = 359

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 94/214 (43%), Gaps = 23/214 (10%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-- 120
           Y L++   L+I    I  L   +     +EL   Y ++ + + +D L+ + N   F    
Sbjct: 143 YRLLDVHELLIAQSQIHALATQLLNQAYQELDEVYKQLQRQACLDGLTQVANRRRFDEYL 202

Query: 121 -----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGR 174
                 +      L+++  D+DYFK  ND +GH  GD  +  ++  +     +P   V R
Sbjct: 203 RQEWLQMARVRSPLALIMADVDYFKLYNDTYGHQQGDDCLKAVALAITQATRSPSDLVAR 262

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAER------ 227
            GGEEFA     +    A ++  D+R  ++   I     P+   +++S G+A        
Sbjct: 263 YGGEEFAIVLPNTDASAALLVGEDIRSRLKAMAIAHQGSPACECVSLSLGVACTVPDDEN 322

Query: 228 -----CHKEPISTIIYRADQALYVAKKSGRNRVV 256
                C  E    +I  AD ALY AKK GR+RVV
Sbjct: 323 GGSYLCSPE---KLIAAADCALYQAKKQGRDRVV 353


>gi|293603494|ref|ZP_06685917.1| diguanylate cyclase [Achromobacter piechaudii ATCC 43553]
 gi|292818105|gb|EFF77163.1| diguanylate cyclase [Achromobacter piechaudii ATCC 43553]
          Length = 558

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 89/175 (50%), Gaps = 18/175 (10%)

Query: 97  YNRISQLSR---IDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +++I  L R    D L+GLLN       ++ L +    ++++  DID+FK IND +GH  
Sbjct: 378 HHKIRDLRRESTTDTLTGLLNRRGLDEAMALLQAAESPVALLAIDIDHFKTINDRYGHSA 437

Query: 151 GDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GD+ +  L+    VV      VG    R GGEEF     G+S + AA  A  LR+ +   
Sbjct: 438 GDRALQALA----VVMSDGSRVGDTLARAGGEEFVVLMPGASLRSAAAAAERLRQRVAAR 493

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
               S    + ITIS G+A    H   ++ +  RADQALY AK  GRN  VC +D
Sbjct: 494 LPTESV--RVGITISVGVARYPEHGATLAAVYRRADQALYHAKNHGRN-AVCIAD 545


>gi|206901454|ref|YP_002251456.1| ggdef domain [Dictyoglomus thermophilum H-6-12]
 gi|206740557|gb|ACI19615.1| ggdef domain [Dictyoglomus thermophilum H-6-12]
          Length = 1073

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 82/183 (44%), Gaps = 12/183 (6%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLS 130
           +  +  YIS +I   L   +    +L+ ID L+G+LN  A        +     YN  LS
Sbjct: 688 LKTIANYISIAIENALL--FEETKKLATIDPLTGILNRRALEEAFNKDVERAKRYNRPLS 745

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
            +  D+D FK  ND +GH  GD+V+  L+  L         VGR GG+EF      ++ Q
Sbjct: 746 AMVIDVDDFKLFNDTYGHLFGDQVLKELAKTLRNSCRKTDIVGRYGGDEFCIILPETNLQ 805

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAK 248
            A   A  L K I N  +       I I +S G+A       EP   ++  AD  +Y AK
Sbjct: 806 GATKFAERLLKNIRNLTVVTPDNNKIPIKVSIGVASYPDDTYEP-EKLLTLADTTMYKAK 864

Query: 249 KSG 251
            SG
Sbjct: 865 TSG 867


>gi|157373981|ref|YP_001472581.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sediminis HAW-EB3]
 gi|157316355|gb|ABV35453.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sediminis HAW-EB3]
          Length = 817

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/135 (32%), Positives = 74/135 (54%), Gaps = 3/135 (2%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           +L+IVF D+D FKQIND+FGH +GD+++  L+++L    G    + R+GG+EF     G 
Sbjct: 424 QLAIVFIDVDLFKQINDSFGHLMGDEILVELANRLTAQKGAEDTLARIGGDEFVVLFPGG 483

Query: 188 SEQEAAILA-NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245
              E   LA + LR+  E    ++     + +T S G++   H  +   T++  AD A +
Sbjct: 484 GGSEELTLALSKLREAFEQP-FSVGENDQVRLTASMGVSVYPHDGKDGYTLLRNADAAKH 542

Query: 246 VAKKSGRNRVVCFSD 260
            AK+  RN    +++
Sbjct: 543 RAKQDSRNSYAFYTE 557


>gi|152994439|ref|YP_001339274.1| hypothetical protein Mmwyl1_0401 [Marinomonas sp. MWYL1]
 gi|150835363|gb|ABR69339.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 296

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 4/154 (2%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           +R   L+ + + +A +   G  N   ++V FD+D+FKQ+ND +GH  GD V+     ++ 
Sbjct: 141 TRDGMLAEISDQNALVQR-GQQN--CALVMFDLDHFKQVNDTYGHIAGDLVLVSTVQRIK 197

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHITISA 222
            +      + R GGEEF      ++  +A ++A  +R+ I    I   +S  S+ +T S 
Sbjct: 198 TLLRPYDRIYRYGGEEFIICMPRTTLAQAHMVAERMREAIAEQNIQFDNSRESLRVTASF 257

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G+        +   I   D+A+Y AK++GRNRVV
Sbjct: 258 GVTILTQLRSVEESIDYVDKAMYEAKRAGRNRVV 291


>gi|37676596|ref|NP_936992.1| hypothetical protein VVA0936 [Vibrio vulnificus YJ016]
 gi|37201139|dbj|BAC96962.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 341

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 77/135 (57%), Gaps = 10/135 (7%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGS 187
           +S++ FDID+FK+ ND FGH  GD+ +  +++ +  +       + R+GGEEFA     +
Sbjct: 199 ISMIIFDIDHFKKYNDTFGHQQGDECLRMIAEAIRSMKLRCLDKIARIGGEEFAVILPET 258

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEP-IST----IIYRAD 241
             + A  +AN +R  IE   I  S   ++ ++T S G+   C   P I T    ++ +AD
Sbjct: 259 EMEGAKHVANRIRTTIEELSITHSHHATLPYVTASLGV---CSIVPEIDTNPRLLLKKAD 315

Query: 242 QALYVAKKSGRNRVV 256
           +ALY AK++GRNR+ 
Sbjct: 316 EALYRAKRTGRNRIA 330


>gi|124265895|ref|YP_001019899.1| diguanylate cyclase [Methylibium petroleiphilum PM1]
 gi|124258670|gb|ABM93664.1| diguanylate cyclase [Methylibium petroleiphilum PM1]
          Length = 361

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 120/290 (41%), Gaps = 54/290 (18%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           L  WL H   L    P   ++             + + N+F  ++G T  +GL  +L E 
Sbjct: 79  LDDWLPHRDALAGGEP---LLALPTSRPGPRGRPVLL-NVFPLWVG-TERFGLVEVLAEK 133

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQL--SRIDCLSGLLNHSAFISSLGS-- 124
                     +  L ++  ++LK   I  N++  L  S  D L+GLLN   F    G   
Sbjct: 134 -------PLDAEQLRFVD-AVLK---IYRNQVGLLDYSERDTLTGLLNRKTFDEQFGKCL 182

Query: 125 -----------------------YNEKLSIVFF----DIDYFKQINDNFGHPVGDKVIAF 157
                                     + S+ ++    D+D+FK++NDNFGH +GD+V+  
Sbjct: 183 LECDGPGPLAPLSPSADGGQQPERRARASLRYWIGVVDVDHFKRVNDNFGHLIGDEVLLL 242

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI- 216
           ++  L   F     + R GGEEF       S   AA+     R  +E  +      P + 
Sbjct: 243 MARILRGAFRHGDRLYRFGGEEFVVMLHADSRVHAALAFERFRARMETCRF-----PQVG 297

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD-IENNT 265
            +T+S G+ E    +  S    RAD A+Y AK++GRN++ C    +E  T
Sbjct: 298 SVTVSIGMTELRADDTPSAAFSRADLAVYHAKQNGRNQLQCHDQLVEGGT 347


>gi|312195498|ref|YP_004015559.1| serine/threonine protein kinase [Frankia sp. EuI1c]
 gi|311226834|gb|ADP79689.1| serine/threonine protein kinase [Frankia sp. EuI1c]
          Length = 1681

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 94/207 (45%), Gaps = 18/207 (8%)

Query: 66   VENLSLVIISITISLLLGYISGSI-------LKELFISYNRISQLSRIDCLSGLLNHSAF 118
            +E + L+   +T+SL    +  S+        ++L  +  R+ QLS  D L+GL N    
Sbjct: 1471 LEGIMLIAAQLTVSLDNALVYASLERKVTERTRQLAAANQRLEQLSVTDPLTGLANRRRL 1530

Query: 119  ISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
               L S        +  L +   D+D+FK  ND FGH  GD+ +  ++  L         
Sbjct: 1531 EDVLDSEWGRSAQRHTPLGLAMIDVDHFKGYNDRFGHTAGDRCLQRVAACLRANVRDTEL 1590

Query: 172  VGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQINISSGPSIHITISAGIAERCHK 230
              R GGEEFA     S    A  LA  L   + E ++ + S+  +I +T+S G A     
Sbjct: 1591 AARYGGEEFAIVMPNSDRDTATRLAGRLCHAVAELAEPHPSAQKAI-VTVSVGAASVLPG 1649

Query: 231  E--PISTIIYRADQALYVAKKSGRNRV 255
                ++ +I  AD ALY AK+ GR RV
Sbjct: 1650 PDGSVAKLIDLADAALYQAKRDGRGRV 1676


>gi|299068767|emb|CBJ40007.1| putative modulator of Rnase II stability, signal transduction
           protein eal-ggdef domains (gmr) [Ralstonia solanacearum
           CMR15]
          Length = 625

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 21/183 (11%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNE-KLSIVFFDIDYFKQINDNFGH 148
           +  RI  L+  D L+GLLN  A         +L   N  ++S++F D+D FK +ND  GH
Sbjct: 179 AQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRNRSRVSVMFLDLDRFKNVNDTLGH 238

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-----ALGSSEQEAAILANDLRKII 203
             GD+++  ++ +L         V RLGG+EF         +G+      ILA     I 
Sbjct: 239 QFGDQLLREVAARLQACAREADTVARLGGDEFVVMLESLDGVGTRRVAERILA----AIG 294

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF-SDI 261
               I+   G  + + +S GIA   H  +   T++ +AD A+Y+AK+ GRN    F SD+
Sbjct: 295 APFHID---GQELFLGVSIGIAVAPHDGDDPHTLLRKADAAMYLAKERGRNNFQTFTSDL 351

Query: 262 ENN 264
           ++ 
Sbjct: 352 DDR 354


>gi|229056403|ref|ZP_04195816.1| Sensory box/GGDEF [Bacillus cereus AH603]
 gi|228720877|gb|EEL72426.1| Sensory box/GGDEF [Bacillus cereus AH603]
          Length = 569

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKLS--IVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++     EK+   +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDGLTSLPNRLQLITTVNKMIAEKIEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       +  E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKTHTHDEMRQLATSVLSCFQAP- 253

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D
Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGKDVETLLKNSDLAMYSAKEQGRNAACFFTD 306


>gi|190894463|ref|YP_001984756.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190700124|gb|ACE94206.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 648

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 12/164 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFF--DIDYFKQINDNFGHPVGDKV 154
           +LS  D L+G+ N  A    L        +E    V F  D+D+FK+ ND +GH  GD+ 
Sbjct: 225 ELSNTDYLTGISNRRALDRRLDECWAAWKDEGRDFVVFLIDVDFFKRFNDRYGHQEGDRC 284

Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  +++ L  VV  +   +GR GGEEF       +   A  LA  +R  +E   I     
Sbjct: 285 LTVVANVLKAVVESSGGMIGRYGGEEFIVVMPAETPSIAMSLAEKIRMEVEFLAIAHDER 344

Query: 214 P--SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
           P  S  +T+S G+A       E +  I+  AD ALY AK SGRN
Sbjct: 345 PDDSPIVTVSIGVAFTREDVGEKVERIVREADLALYNAKASGRN 388


>gi|75906861|ref|YP_321157.1| diguanylate cyclase [Anabaena variabilis ATCC 29413]
 gi|75700586|gb|ABA20262.1| Putative diguanylate cyclase (GGDEF domain) with PAS/PAC and Chase2
           sensors [Anabaena variabilis ATCC 29413]
          Length = 737

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 15/174 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL +  + +  L+  D L+GL N   F   L          N  L ++F D+D FKQ+ND
Sbjct: 557 ELKLKEDHLRYLAYHDALTGLPNRKYFAEQLYESINWAKDNNFSLGLLFIDLDGFKQVND 616

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKI 202
           + GH +GD+++  ++ +L         V RLGG+EF     A+ + +  A +    L  I
Sbjct: 617 SLGHEMGDRLLVVIAQRLSNSLRASDTVARLGGDEFTVILQAIPNVQVAAKVAEKILANI 676

Query: 203 IENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            E   +N   G +  +++S GI+       +P  T++ +AD A+Y AK  G+NR
Sbjct: 677 TEPIVLN---GCTTKVSVSIGISIYPETSLDP-DTLLKKADAAMYRAKHLGKNR 726


>gi|182625599|ref|ZP_02953369.1| sensory box protein/histidinol phosphate phosphatase family protein
           [Clostridium perfringens D str. JGS1721]
 gi|177909151|gb|EDT71622.1| sensory box protein/histidinol phosphate phosphatase family protein
           [Clostridium perfringens D str. JGS1721]
          Length = 624

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 20/170 (11%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           KE+ I  +R++     D L+ + N   F  S           ++K +++F D+D+FK+IN
Sbjct: 182 KEMEIELDRMANY---DELTNIPNMRLFFKSFRNTINESKKMDKKFAVLFIDLDWFKEIN 238

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILAND 198
           DN+GH VGD+V+     ++         +GR+GG+EFAA     S++E        + N 
Sbjct: 239 DNYGHDVGDEVLVCAVKRIYKCLRKGDILGRIGGDEFAAILKDISDREEIEKIVKDIQNS 298

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           LRK I+   +  +   SI ITI     E+     I  ++  +D+A+Y  K
Sbjct: 299 LRKRIKIGDVTCNIDSSIGITIFPEDGEK-----IEVLMRNSDKAMYKVK 343


>gi|117618806|ref|YP_855696.1| GGDEF domain-containing protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560213|gb|ABK37161.1| GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 539

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 24/184 (13%)

Query: 89  ILKELFISYNRISQLSR----IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           ++KE    Y +   + +    +D L+ + N +A    L         YN  L +   DID
Sbjct: 360 LMKEETAEYKKRLTIQKHKLFLDSLTQVHNRAALDERLELEYKRWLRYNTPLCLAIIDID 419

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK INDN+GH  GDK +  ++  L        F+ R GGEEF             I  +
Sbjct: 420 HFKHINDNYGHMAGDKALKVVAKALQGALRDTDFIARFGGEEFVVLL-------PNINPD 472

Query: 198 DLRKIIENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
             +K +E  +  I S P       + ITIS G       +  +    RAD+ALY +K SG
Sbjct: 473 KFQKPLETLRQTIKSIPFRFRDARVEITISIGATLFREGDHTTDAFERADKALYSSKNSG 532

Query: 252 RNRV 255
           R++V
Sbjct: 533 RDQV 536


>gi|33591567|ref|NP_879211.1| hypothetical protein BP0338 [Bordetella pertussis Tohama I]
 gi|33571209|emb|CAE40715.1| putative membrane protein [Bordetella pertussis Tohama I]
 gi|332380967|gb|AEE65814.1| hypothetical protein BPTD_0333 [Bordetella pertussis CS]
          Length = 380

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 107/226 (47%), Gaps = 28/226 (12%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI-------- 100
            +  + L P   L +   E+ SL I+S+ + L L  ++ +  +     +NR+        
Sbjct: 158 LMICVSLGPCTTLPWFTGEH-SLWIVSVQLPLYLASMTVAAYR-----FNRMLVATMQAE 211

Query: 101 ---SQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
               +L+R D L+GL+N          A  ++    NE  ++++ D+D FK +ND  GH 
Sbjct: 212 RDSDRLARCDALTGLMNRFGLGFALERAVAATRRDGNE-FALLYLDLDGFKSVNDTHGHA 270

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQI 208
            GD+++  ++ +L  +      + R+GG+EF        E  A  L + +  +I E   +
Sbjct: 271 AGDRLLRDVAARLTELAPADAAIARIGGDEFVLLVRDCDEACATALGDRIVARICELYDL 330

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
                  I  ++   +  R H + ++ I+  AD+ALY+AK +G++R
Sbjct: 331 GTPRPVRIGGSVGIALVPR-HGQEMTAILKAADRALYLAKSAGKSR 375


>gi|319781884|ref|YP_004141360.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317167772|gb|ADV11310.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 668

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 81/168 (48%), Gaps = 20/168 (11%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK- 153
           +LSR D L+GL N  A    L  Y             +  D+D+FK+ ND +GH  GD+ 
Sbjct: 231 RLSRTDPLTGLENRRAIDEKLRDYWNDWQKVGTSFGAILIDVDFFKKFNDCYGHQEGDRC 290

Query: 154 ---VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209
              V   LSD +    G+   +GR GGEEF   A    +++   +A  +   +EN  +  
Sbjct: 291 LIHVANALSDMIKQYNGS---IGRYGGEEFIVLARMEKKEQILDIAEAICSTVENLALTH 347

Query: 210 --ISSGPSIHITISAGIA-ERCHK-EPISTIIYRADQALYVAKKSGRN 253
                G SI +T+S G A  R      +  II+ AD+ALY+AK  GRN
Sbjct: 348 ELRRDGVSI-VTVSVGAAFTRTQTGAKLEKIIHEADRALYLAKAGGRN 394


>gi|152964994|ref|YP_001360778.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151359511|gb|ABS02514.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 770

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 91/177 (51%), Gaps = 21/177 (11%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFI--------SSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           S+ R+S  +  D L+GL   + F+        +S+ +   + S++  D+D FKQ+ND  G
Sbjct: 327 SHARLSHRASHDELTGLPTRALFLERTIDAVDASVATGTGRASVLNIDLDDFKQVNDRHG 386

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA---AAALGSSEQEAAILANDL-RKII 203
           H  GD+++  +  ++V V G    V R GG+EFA    AAL   E  A  LA  L  +++
Sbjct: 387 HAGGDELLVEIGARMVQVCGPGSVVARFGGDEFAVLLPAALPLPEVHA--LAQALCARLV 444

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCF 258
           E   ++ +      +T+ A I     + P++   ++  AD A+Y AK  G+NRV  F
Sbjct: 445 EPVHLSTAV-----VTVGASIGVASWQPPLTAHDLVRCADIAMYSAKARGKNRVEVF 496


>gi|330988900|gb|EGH87003.1| hypothetical protein PLA107_28003 [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 397

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 94/210 (44%), Gaps = 21/210 (10%)

Query: 68  NLSLVIISITISLLLGYI--SGSILKELFISYNRISQL-----SRIDCLSGLLNHSAFIS 120
           N  L + ++ + L+  Y     S +  LF    R+ Q+     +R D L+ L N      
Sbjct: 191 NAVLFVSTVALLLMASYFLERASRMSYLFALRGRLLQVQLMEFARTDGLTRLFNRRYQDE 250

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            + S  E+       ++I+  DID+FK  NDN+GHP GD  +  L  ++         V 
Sbjct: 251 VMTSVWERARKTPANVAIILLDIDHFKSYNDNYGHPQGDTCLKLLCQKIQQSAHENGAVA 310

Query: 174 -RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232
            R GGEE      G + Q   +       +      +   G S  +T+S G+A  C   P
Sbjct: 311 FRFGGEEVLVLMNGDAGQAREMADALQAAVAALKLPHPVLGESAFVTVSLGVA--CATAP 368

Query: 233 IST---IIYRADQALYVAKKSGRNRVVCFS 259
            +T   +I  AD ALY AK++GRN  VCF+
Sbjct: 369 QTTADHLISAADNALYAAKRAGRN-CVCFA 397


>gi|331006667|ref|ZP_08329947.1| GGDEF domain containing protein [gamma proteobacterium IMCC1989]
 gi|330419520|gb|EGG93906.1| GGDEF domain containing protein [gamma proteobacterium IMCC1989]
          Length = 705

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 16/166 (9%)

Query: 107 DCLSGLLN----HSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N    +    + +G Y E    L I+F D+D FKQ+ND+ GH +GDK++   +
Sbjct: 242 DLLTGLYNRQNLYDYLYTQIGEYVEDKGNLFILFVDLDGFKQVNDSMGHAIGDKILYECA 301

Query: 160 DQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIH 217
            +L     +   ++ RLGG+EF       +++    + N   KII +    ISS G ++ 
Sbjct: 302 MRLESTAKSQGAYIARLGGDEFVLCFYDENKESYHDVCN---KIINSFDEKISSQGINVK 358

Query: 218 ITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  S G+    +    EP  T+++ AD AL  AK SG+N   CF D
Sbjct: 359 LACSIGVTLYPDDQSTEP-KTLLHNADNALCKAKSSGKNTYYCFDD 403


>gi|298530005|ref|ZP_07017407.1| response regulator receiver modulated diguanylate cyclase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509379|gb|EFI33283.1| response regulator receiver modulated diguanylate cyclase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 310

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 12/175 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDN 145
           L I  + + +LS  D L+ + N   F  +L     +       LS +  DID FK  NDN
Sbjct: 129 LKIKTDMLEKLSMQDGLTEIPNRRFFEENLAREWSRCMRNGLPLSQLIMDIDNFKPYNDN 188

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD  +  +++ +      P     R GGEEF      +    A  +A +LR  ++
Sbjct: 189 YGHGAGDDCLKKVANVIKNTLSRPTDLAARYGGEEFVVLLPETHAAGAVHVAEELRAAVQ 248

Query: 205 NSQINISSGPSIH-ITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255
              I     P+   +TIS G +    + P+     ++  AD+ALY AK+SGRNRV
Sbjct: 249 GLGITHEHSPTASVVTISVGTSTHSAESPMKNKEQLLQLADEALYQAKESGRNRV 303


>gi|110799120|ref|YP_695252.1| sensory box protein/histidinol phosphate phosphatase family protein
           [Clostridium perfringens ATCC 13124]
 gi|168209235|ref|ZP_02634860.1| sensory box protein/histidinol phosphate phosphatase family protein
           [Clostridium perfringens B str. ATCC 3626]
 gi|110673767|gb|ABG82754.1| sensory box protein/histidinol phosphate phosphatase family protein
           [Clostridium perfringens ATCC 13124]
 gi|170712630|gb|EDT24812.1| sensory box protein/histidinol phosphate phosphatase family protein
           [Clostridium perfringens B str. ATCC 3626]
          Length = 624

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 20/170 (11%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           KE+ I  +R++     D L+ + N   F  S           ++K +++F D+D+FK+IN
Sbjct: 182 KEMEIELDRMANY---DELTNIPNMRLFFKSFRNTINESKKMDKKFAVLFIDLDWFKEIN 238

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILAND 198
           DN+GH VGD+V+     ++         +GR+GG+EFAA     S++E        + N 
Sbjct: 239 DNYGHDVGDEVLVCAVKRIYKCLRKGDILGRIGGDEFAAILKDISDREEIEKIVKDIQNS 298

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           LRK I+   +  +   SI ITI     E+     I  ++  +D+A+Y  K
Sbjct: 299 LRKRIKIGDVTCNIDSSIGITIFPEDGEK-----IEVLMRNSDKAMYKVK 343


>gi|13472974|ref|NP_104541.1| hypothetical protein mll3440 [Mesorhizobium loti MAFF303099]
 gi|14023722|dbj|BAB50327.1| mll3440 [Mesorhizobium loti MAFF303099]
          Length = 426

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q S  D  +GL N        S  +  +    + L+++  D+D+FKQ ND FGH  GD
Sbjct: 242 LRQQSIRDPNTGLYNRRYLEETSSRELRRMERSGQPLAMIMLDVDHFKQFNDTFGHEAGD 301

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L+        V R GGEEFA    G+S  +AA  A  LRK I+  Q++++ 
Sbjct: 302 LVLKQVAATLLDHARESDVVSRYGGEEFALMMPGTSLADAAERAEALRKAIK--QLHLTH 359

Query: 213 GPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVC 257
                 TI+A        E  ++   I+  AD++LY AK  GR+RVV 
Sbjct: 360 RGRTLGTITASFGVSAFPELGASWVEIVNAADRSLYQAKADGRDRVVA 407


>gi|89092959|ref|ZP_01165910.1| PAS sensor diguanylate cyclase/phosphodiesterase [Oceanospirillum
           sp. MED92]
 gi|89082609|gb|EAR61830.1| PAS sensor diguanylate cyclase/phosphodiesterase [Oceanospirillum
           sp. MED92]
          Length = 948

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 97/190 (51%), Gaps = 25/190 (13%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEK---LSIVFFDIDYF 139
           G  L E   +  R+  ++  D L+ L N   F      ++  Y EK   L+I+F D+D F
Sbjct: 500 GLDLTERMHAEKRLVWMANHDPLTALPNRLLFTEKVDEAIKRYQEKNGILAILFCDLDSF 559

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND+ GHPVGD+++   ++++  +      + RLGG+EF     G +         ++
Sbjct: 560 KDVNDSLGHPVGDELLQQAAERIQNIICNDGVLARLGGDEFTVLLEGRA---------NI 610

Query: 200 RKIIENSQINISS--------GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKS 250
           R+I   +Q  I +        G  I  TIS GI+    H + ++++I  AD A++ AK+S
Sbjct: 611 REIENVAQHIIRAFRQSFFIDGYEIFSTISIGISLHPDHGDNVTSLIQHADVAMFDAKES 670

Query: 251 GRNRVVCFSD 260
           G+N++  + D
Sbjct: 671 GKNQLRFYHD 680


>gi|186682679|ref|YP_001865875.1| response regulator receiver modulated diguanylate cyclase [Nostoc
           punctiforme PCC 73102]
 gi|186465131|gb|ACC80932.1| response regulator receiver modulated diguanylate cyclase [Nostoc
           punctiforme PCC 73102]
          Length = 322

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 97/191 (50%), Gaps = 26/191 (13%)

Query: 85  ISGSILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDI 136
           I  S L++   + N  + +L+ ID L+ + N   F   L    ++L       S++  D+
Sbjct: 127 IEQSQLQQKLEAVNLELQRLATIDGLTQIANRRRFEEYLNQEWQRLKRDKRPLSLILCDV 186

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAI- 194
           D+FK  ND +GH VGD+ +  ++  +  +   P   V R GGEEF A  L +++ E A  
Sbjct: 187 DFFKLYNDTYGHRVGDRCLQEIAKAIKDIIKRPGDLVARYGGEEF-AVILPNTDTEGATH 245

Query: 195 ----LANDLRKII---ENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALY 245
               + + +RK+    ENS++      S ++TISAG      +    +  +I  AD+ALY
Sbjct: 246 VAKKICHTVRKLAIPHENSEV------SPYVTISAGFTTEIPQSDSDLEEMIAAADRALY 299

Query: 246 VAKKSGRNRVV 256
            AK +GR+R V
Sbjct: 300 QAKAAGRDRFV 310


>gi|312959064|ref|ZP_07773583.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           fluorescens WH6]
 gi|311286834|gb|EFQ65396.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           fluorescens WH6]
          Length = 497

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 14/168 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S+L+  D L+GL N       L           E L+++  D+D+FK  ND  GH  GD
Sbjct: 328 LSELAATDALTGLANRRILDERLRLEWDRAQRSTEPLTLLMIDVDHFKAFNDRHGHQGGD 387

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           + +  ++  +      P     R GGEEFA     +  + A ++A  +R  +E  ++   
Sbjct: 388 EALRTVAQVIGSNIRRPADLAARYGGEEFAVVLPHTDTKGALVIAEHIRSSVE--RLPRV 445

Query: 212 SGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVV 256
           +G    IT+S G++   HK     +  ++  ADQALY AK++GRNR+V
Sbjct: 446 AGDERPITVSIGLST-WHKRSRLSLEALLLSADQALYEAKRAGRNRIV 492


>gi|304411758|ref|ZP_07393370.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|307306190|ref|ZP_07585935.1| diguanylate cyclase [Shewanella baltica BA175]
 gi|304349946|gb|EFM14352.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|306911063|gb|EFN41490.1| diguanylate cyclase [Shewanella baltica BA175]
          Length = 389

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPV 150
           ++I  L+  D L+GL N  A    L + +++        S++  D+D+FK+IND +GH  
Sbjct: 222 SKIRMLAERDQLTGLWNRRAMHKFLNNIHQRWLRDNVPYSMILLDLDHFKEINDQYGHDA 281

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD  +   +     V      + R GGEEF      +    A  +A  L ++++++   I
Sbjct: 282 GDLALLTAARLFGSVLRENDALCRHGGEEFLVILPATDAPAARAVAEKLHQVLKDNSF-I 340

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             G +I I  S G A          ++ +ADQA+Y AK  GR+R+
Sbjct: 341 WQGVTIKIHASLGYATIYQGCQPDKLLIQADQAMYRAKSEGRDRI 385


>gi|261253257|ref|ZP_05945830.1| GGDEF family protein [Vibrio orientalis CIP 102891]
 gi|260936648|gb|EEX92637.1| GGDEF family protein [Vibrio orientalis CIP 102891]
          Length = 469

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 100/204 (49%), Gaps = 17/204 (8%)

Query: 65  LVENLSLVIISIT-----ISLLLGYISGSILKEL----FISYNRISQLSRI---DCLSGL 112
           + EN  LV+  I      I++LL YI   ++++      +   R  +L  +   D L+GL
Sbjct: 262 VTENERLVLTWIALAGCVIAVLLSYIVWLLVRDKEHLGLLLDERTEELQFMVDHDSLTGL 321

Query: 113 LNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            N  AF   +S +    +  S++ FDID FK IND FGH  GD+++ F+++ +       
Sbjct: 322 YNRRAFNRFLSDMVEREQTFSLIAFDIDKFKSINDYFGHVAGDEMLVFVTNTVQAQLDES 381

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               R+GG+EF   +      +     N++ +++ +S +  S    I  T+S G A R  
Sbjct: 382 DIFVRMGGDEFCILSPKIDRDDLFAYLNNICRVVASS-VYESDHHKIRCTLSVGAAVRM- 439

Query: 230 KEPISTIIYRADQALYVAKKSGRN 253
            E    I+  AD  LY +K++GRN
Sbjct: 440 LESEEEILKAADAQLYKSKQAGRN 463


>gi|319786946|ref|YP_004146421.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317465458|gb|ADV27190.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 975

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 85/178 (47%), Gaps = 22/178 (12%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----------IVFFDIDYFKQINDNFGH 148
           R++  +  D L+GL N S  + SL S  E+ S          ++F D+D FK +ND+ GH
Sbjct: 551 RLTHQALHDALTGLPNRSCLLDSLASALERASDMAGDVPGFAVLFLDLDRFKVVNDSIGH 610

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQ 207
             GD ++  ++ +LV   G    V RLGG+EFA  A+          LA  L  +I   Q
Sbjct: 611 AAGDDLLVAVARRLVSAVGNDAVVARLGGDEFAVLASCKDGIDGVHELARHLLSVI--GQ 668

Query: 208 INISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
               +G  +  + S GIA      R  +E    ++  AD A+Y AK  GR+R   F +
Sbjct: 669 PLWVAGRELFPSASMGIALWHPRYRSGEE----LLRDADAAMYRAKNEGRDRFAVFDE 722


>gi|295678208|ref|YP_003606732.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia sp. CCGE1002]
 gi|295438051|gb|ADG17221.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia sp. CCGE1002]
          Length = 371

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 10/176 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+GL N       L          N  L ++  D+D FK  N
Sbjct: 193 QQLLATNLELQRLTHSDGLTGLSNRRYLDQHLADEWRRGTRDNTGLGLLMIDVDNFKAYN 252

Query: 144 DNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+V+  ++  +   +  +P    R GGEEFA    G+S     +LA  +R  
Sbjct: 253 DTYGHVAGDEVLKSVAHTIEACLRHSPDLAARFGGEEFAVVVPGTSAGGLRLLAEKIRIA 312

Query: 203 IENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +E+  I  +      +TIS G A       EP+ T+I  A   LY AK  G+N V 
Sbjct: 313 VEDLAITHAGSAEGVVTISIGAALMVPSAAEPVPTLIEAASVGLYRAKHDGKNHVA 368


>gi|254557588|ref|YP_003064005.1| diguanylate cyclase/phosphodiesterase domain-containing protein
           [Lactobacillus plantarum JDM1]
 gi|254046515|gb|ACT63308.1| diguanylate cyclase/phosphodiesterase domain-containing protein
           [Lactobacillus plantarum JDM1]
          Length = 378

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 12/162 (7%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ + N +A+       ++S      +L+++ FDID+FKQ+ND +GH  GDK++  ++
Sbjct: 217 DALTKIENFAAYKTAINYQVTSSRKNGSQLTMLMFDIDHFKQVNDTYGHLAGDKILQHVA 276

Query: 160 DQLVVVF--GTPMF-VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
               +VF    P   + R GGEEF          EA  +A  L   I +  + ++    I
Sbjct: 277 QVATIVFHANNPQISLYRTGGEEFNVIFPNYDLTEALAVAEQLFAAINHIAVPVND-HQI 335

Query: 217 HITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVC 257
            ++IS G++E    +   T  Y R D  LY +KK GR ++  
Sbjct: 336 QLSISVGLSELAADDQSPTAFYQRVDANLYHSKKHGRMQITA 377


>gi|226310278|ref|YP_002770172.1| hypothetical protein BBR47_06910 [Brevibacillus brevis NBRC 100599]
 gi|226093226|dbj|BAH41668.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 306

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 88/186 (47%), Gaps = 14/186 (7%)

Query: 88  SILKELFISYNRISQLSRI---DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           SI +++    N  SQL+ +   D L+GL N       L        S  E ++ ++ D D
Sbjct: 123 SITRDVTERTNLESQLAYMAYHDVLTGLPNRRLLSEKLQQALRAAQSKEEMVAALYLDCD 182

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA 196
            FK+IND +GH  GD  +  L+ +L         V RLGG+EF     G  SE++   +A
Sbjct: 183 RFKEINDTWGHDTGDLFLQMLATRLKSSVRDGDIVARLGGDEFVIVLTGIHSERQVEKIA 242

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           N  R ++   +  +    +I  + S GIA           ++  AD+ALY AKK+GRNR 
Sbjct: 243 N--RILLATQEPWMIEDRTIPFSTSIGIALYPASASEAEQLLSNADKALYQAKKTGRNRF 300

Query: 256 VCFSDI 261
             F  I
Sbjct: 301 FFFDPI 306


>gi|315179806|gb|ADT86720.1| GGDEF family protein [Vibrio furnissii NCTC 11218]
          Length = 486

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 9/159 (5%)

Query: 103 LSRIDCLSGLLNHSAFIS--SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           L+  D ++GLLN         +  ++  LS+   DID FK IND +GH VGD VI ++ D
Sbjct: 331 LASRDPMTGLLNRRGMEEFLQVKQHSRYLSVAVLDIDNFKSINDTYGHDVGDDVICYVGD 390

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHIT 219
           Q+         V R GGEEF          Q  A++      I  +S   + +G     T
Sbjct: 391 QIECNIRETDAVARFGGEEFVVYLTSPDPLQIEAVMQRVKEAITRDSTRVVPNG----FT 446

Query: 220 ISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           IS GI   E   +         AD+ LY+AK +G++++V
Sbjct: 447 ISGGIQVIESHQEWDFDKQFKLADEKLYLAKTTGKDKLV 485


>gi|307946856|ref|ZP_07662191.1| diguanylate cyclase [Roseibium sp. TrichSKD4]
 gi|307770520|gb|EFO29746.1| diguanylate cyclase [Roseibium sp. TrichSKD4]
          Length = 351

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 2/134 (1%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID+FK+ ND FGH  GD+V+  ++  +     +     R GGEEFA       +
Sbjct: 210 ALLMTDIDHFKKFNDTFGHQTGDQVLRLVALSVKQNVRSNDTACRYGGEEFAIILPTCPK 269

Query: 190 QEAAILANDLRKIIENSQ-INISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVA 247
             A  +A+ +R  +++ + +  S+G ++  ITIS GI+     +   ++I RADQALY A
Sbjct: 270 ANACTVADKIRDAVKSKELVKRSTGQNLGRITISIGISTYQSGDTAESLISRADQALYQA 329

Query: 248 KKSGRNRVVCFSDI 261
           K  GR+ V    D+
Sbjct: 330 KHDGRDCVRTEDDL 343


>gi|307299972|ref|ZP_07579757.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti
           BL225C]
 gi|306904861|gb|EFN35444.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti
           BL225C]
          Length = 564

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 74/163 (45%), Gaps = 15/163 (9%)

Query: 107 DCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GL N   F   L          +L+++  D+D FK IND  GH  GD V+   +D+
Sbjct: 138 DVLTGLPNRRQFSDQLRGALPVPNGARLALMQIDLDDFKPINDTLGHGAGDAVLKMAADR 197

Query: 162 LVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
           +  V     F  RL G+EFA     A     +E+ A  L N  ++      IN+  G S+
Sbjct: 198 IRSVLRDREFAYRLAGDEFAVIQWRADQPSEAERLADALINAFKEPFTVEGINVFVGASV 257

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I ++        +     ++  AD ALY AKK GR R   F+
Sbjct: 258 GIAVAPADGNEVEQ-----LMKAADIALYAAKKDGRGRSSTFT 295


>gi|304309898|ref|YP_003809496.1| hypothetical protein HDN1F_02470 [gamma proteobacterium HdN1]
 gi|301795631|emb|CBL43830.1| hypothetical protein HDN1F_02470 [gamma proteobacterium HdN1]
          Length = 993

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 20/173 (11%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I +L+  D L+GL N    +    S       ++  L+++F D+D FK IND  GH VGD
Sbjct: 554 IHKLAHYDPLTGLANRVLLVDHFDSALALAQRHSLPLALMFMDLDRFKIINDTLGHSVGD 613

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII------ENS 206
           +V+  ++ Q          V R GG+EF     G + Q+A  +A  L + I      E+ 
Sbjct: 614 EVLIHVAKQFKTSIRDEDTVARRGGDEFVFIFPGINSQQARNVAQKLSRSISEPFRSEHQ 673

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++NI+S   I +    G           T+  +AD A+Y AK++GRN+   ++
Sbjct: 674 ELNITSSIGIAMYPDDG-------GDFETLARKADVAMYRAKQNGRNQFAFYT 719


>gi|300697792|ref|YP_003748453.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum CFBP2957]
 gi|299074516|emb|CBJ54067.1| putative signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum CFBP2957]
          Length = 914

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 11/165 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D L+GL N S FI+ L S  E+       L++ F D+D FK +ND  GH  G
Sbjct: 472 RLRHLASHDALTGLTNRSFFIAHLDSAIERARDESRELALFFLDLDRFKSVNDTAGHACG 531

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINI 210
           D ++   + +L    G    + RLGG+EF        E +  A LA  L   +      +
Sbjct: 532 DTLLQSAAARLTDCIGPGDVIARLGGDEFVILIEQRVEGKRIAQLAEHLLAAMREPFDTV 591

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNR 254
           +     ++ +S G+A   H     T + R AD A+Y AK++GRNR
Sbjct: 592 NG--RYYLGVSIGVALYPHDGISGTDLLRSADAAMYRAKQNGRNR 634


>gi|222150744|ref|YP_002559897.1| hypothetical protein MCCL_0494 [Macrococcus caseolyticus JCSC5402]
 gi|222119866|dbj|BAH17201.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 354

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 9/168 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-----ISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPV 150
           +R ++   +D L+GL N  AF     I S  S  +K  LS++  DID FK++ND FGH  
Sbjct: 181 SRFNKEHVVDYLTGLGNVRAFDRYLNIISRQSSEQKQSLSLLLIDIDDFKEVNDKFGHDA 240

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  +S  L         + R GGEEF+      S  +   +A  ++  + NS  ++
Sbjct: 241 GDAVLKQMSQVLNNYVPDQSKIFRNGGEEFSVIFNDKSLNDTVKIAESIKNGVINSTFHL 300

Query: 211 SSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  +IH+T++ G+    R   +    I   AD+ L+ AK  G N ++
Sbjct: 301 QNRETIHLTVTIGVGYIPRSEIKTHRKIFKEADEMLHAAKNQGVNTIM 348


>gi|171060140|ref|YP_001792489.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Leptothrix cholodnii SP-6]
 gi|170777585|gb|ACB35724.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptothrix cholodnii SP-6]
          Length = 745

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 19/170 (11%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I+QL+  D L+GL N       L            + +++F D+D+FK IND  GH  GD
Sbjct: 310 IAQLAFYDPLTGLPNRRLLKDRLNQAMAISARSQREGALLFIDLDHFKDINDTRGHDKGD 369

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFA---AAALGSSEQEAAILANDLRKIIEN--SQ 207
            ++  ++ +L         V R+GG+EF     A L ++  EAA  A   R + E   + 
Sbjct: 370 LLLQNVAQRLSGCVREGDTVARIGGDEFVVMLGADLSTATDEAASHA---RSVAEKILAA 426

Query: 208 INIS---SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
           +N+    SG  +H + S G+A    H + +  ++ RADQA+Y AK  GRN
Sbjct: 427 LNLPYLMSGEFVHCSASLGVALFNDHHDTVDELLKRADQAMYQAKAGGRN 476


>gi|149914317|ref|ZP_01902848.1| diguanylate cyclase response regulator [Roseobacter sp. AzwK-3b]
 gi|149811836|gb|EDM71669.1| diguanylate cyclase response regulator [Roseobacter sp. AzwK-3b]
          Length = 463

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%)

Query: 106 IDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+GL N           I          +++  D+D+FK+IND  GH  GD V++ +
Sbjct: 293 IDPLTGLYNRRYALPFLDRLIDETRRDGRGFAVMVADLDHFKRINDRHGHAAGDAVLSQI 352

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIH 217
           +  L         + R+GGEEF      +   EA+ +A  L   +  S +++ SS   ++
Sbjct: 353 ARLLKSNLRDEDMIARIGGEEFLIVMPDTGRDEASRMARRLCAAVRRSPLHVMSSEAPLN 412

Query: 218 ITISAGIAERCHKEP------ISTIIYRADQALYVAKKSGRNRVVCFS 259
           +TIS G A   H  P      + T++  AD+ALY +K  GRN +V FS
Sbjct: 413 VTISIG-ATLGHPRPDAETPRVDTLLDEADRALYGSKSDGRN-MVTFS 458


>gi|149186903|ref|ZP_01865212.1| hypothetical protein ED21_22133 [Erythrobacter sp. SD-21]
 gi|148829412|gb|EDL47854.1| hypothetical protein ED21_22133 [Erythrobacter sp. SD-21]
          Length = 498

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 8/169 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            ++ +LS  D L+ L N       I+ L S + ++++   D+D FK IND++GH +GD  
Sbjct: 58  KKLERLSNSDALTLLPNRRGLHRDITDLMSPDHEVALAIVDLDGFKIINDHYGHVLGDAT 117

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213
           I  ++  L  + G    + RLGG+E+  A L S E    +L    R+IIE    +I    
Sbjct: 118 IKEIARILADICGEEARIYRLGGDEY--AVLMSGELAGTLLEGHCRRIIERLAKSIKVDN 175

Query: 214 PSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCFSD 260
             + +  S G+A     + +  S ++ RAD A+Y +K+ G+ R   F++
Sbjct: 176 RRLTLGASIGLARNAPGQGVTSSELLRRADVAMYASKRGGKMRCTWFNE 224


>gi|144897986|emb|CAM74850.1| GGDEF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 395

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 8/145 (5%)

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
           F++SL +    L++ F D+D FK IND++GH  GD  +   S  L  V      + R GG
Sbjct: 247 FLTSLRTEG-PLALAFVDLDNFKSINDHYGHEEGDNTLRNASTALRKVLRRGDVLVRWGG 305

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--IST 235
           EEF A    + E+ A I    LR+      +     P   +T S G+AER   +    S 
Sbjct: 306 EEFLALMPNTDEEGARIALARLRE--AGLGLRPDGNP---VTASIGVAERLADQAGQWSE 360

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++ +ADQ +Y+AK++G+N+V+   +
Sbjct: 361 LVEKADQRMYMAKQTGKNKVIGIDN 385


>gi|84393934|ref|ZP_00992675.1| putative regulatory component of sensory transduction system
           [Vibrio splendidus 12B01]
 gi|84375433|gb|EAP92339.1| putative regulatory component of sensory transduction system
           [Vibrio splendidus 12B01]
          Length = 316

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 87/168 (51%), Gaps = 17/168 (10%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q +  D L+ L N     + L       G  N  ++++  D+D+FK  NDN+GH  GD
Sbjct: 140 LQQQANEDGLTKLYNRRYMDTKLEESIAWHGRRNIPMTVILLDVDFFKPYNDNYGHIQGD 199

Query: 153 KVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDLRKII-ENSQ 207
           K +  L+    QL V  G   FVGR GGEEF    L  ++ +AA+L A  +++ + E + 
Sbjct: 200 KCLQGLAGTLKQLFVRAGE--FVGRYGGEEF-VLILSDTDSDAAMLQATRIKEALHEMNY 256

Query: 208 INISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
            +  S  S  +T S G+        E  ++I  + DQALY AK+SGRN
Sbjct: 257 AHEHSTVSDRVTASQGVLSFVPDGGESTASIYEKVDQALYQAKQSGRN 304


>gi|326387145|ref|ZP_08208755.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208326|gb|EGD59133.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 904

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 61/178 (34%), Positives = 82/178 (46%), Gaps = 11/178 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           SG+ L E   +    S+L+  D L+GL N      SL              ++   D+D 
Sbjct: 340 SGADLTERRRTQQHASRLAHFDSLTGLANRFFMSQSLEKILVAPQVQQRACAVFLIDLDR 399

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND  GHP GD+++  ++ +L    G    VGRLGG+EF     G  E+   +LA  
Sbjct: 400 FKQVNDTLGHPAGDQLLKQVAQRLERGVGAAGRVGRLGGDEFEIILAGRIER--PMLAQI 457

Query: 199 LRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNR 254
              IIE+ SQ        + I  S GIA        S  + R AD ALY AK  GR R
Sbjct: 458 AAHIIESLSQPYTLDLGRVMIGASIGIAIAPDDGVTSEALIRNADLALYAAKDGGRGR 515


>gi|220934593|ref|YP_002513492.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995903|gb|ACL72505.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 314

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 83/176 (47%), Gaps = 11/176 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           +EL      + +LS  D L+GL N   F S L          ++ LS++  DIDYFKQ N
Sbjct: 135 QELVRLQKELEELSFKDGLTGLANRRMFDSVLSLEWSNARRNHQPLSLILLDIDYFKQYN 194

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD  +  ++  L         F+ R GGEEF      +  Q A  +A   R +
Sbjct: 195 DCYGHLQGDDCLMRVARILESAATRARDFIARFGGEEFVLILPETDAQAAEKVAQRCRTL 254

Query: 203 IENSQINISSGPSIH-ITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           I ++ I   S  S+  +T S G++     H +     +   D+ LY AK+ GRNRV
Sbjct: 255 ILDAGIPHESSESLPFLTASLGVSTIIPSHGDEPGEFVDEVDRLLYKAKQEGRNRV 310


>gi|167746149|ref|ZP_02418276.1| hypothetical protein ANACAC_00845 [Anaerostipes caccae DSM 14662]
 gi|167654664|gb|EDR98793.1| hypothetical protein ANACAC_00845 [Anaerostipes caccae DSM 14662]
          Length = 483

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 13/163 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLS--IVFFDIDYFKQINDNFGHPVGDK 153
           R  + +  D L+G+ N       I  +   N   S  ++F D+D FKQIND+ GH  GDK
Sbjct: 301 RWKEAADNDALTGINNRKGLEEKILKIMKENGDSSGVLLFLDLDDFKQINDSKGHAFGDK 360

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  +++++     +   VGR+GG+EF     G   ++AA+      K  E  +  I  G
Sbjct: 361 VLRTVAEKIKSCVRSTDVVGRIGGDEFIVFLNGIGGKDAAL------KKAEEIEQKIQDG 414

Query: 214 -PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
                +T+S GIA+          +I RADQALY +K  G+NR
Sbjct: 415 FHGYPVTVSIGIAQFPEDGAEFDVLIKRADQALYYSKNKGKNR 457


>gi|157374558|ref|YP_001473158.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157316932|gb|ABV36030.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 581

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 110/238 (46%), Gaps = 27/238 (11%)

Query: 42  VIFIANI-FLFYIGLTPFYGLEY------ILVENLSLVIISITISLLLGYISGSILKELF 94
           +IFIA + + F+I LT ++ +        I   N    I S      L   +   L+++ 
Sbjct: 330 LIFIAGVLYTFFIWLTNWHFISKGIIQPVIATSNAMQAIASEKTDTPLPKTNNLELQQMV 389

Query: 95  ISYN-------RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
            S         ++  +S ID L+G  N   F       + S  +    LSI+ FD+D FK
Sbjct: 390 SSLETLKSYAAQVKAISEIDGLTGAFNRRYFDLRLDQALQSAHNTPHPLSIILFDVDNFK 449

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVV--FGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           Q ND +GH  GD+ +  +S  +  +      +F  R GGEEF      +    A  +A  
Sbjct: 450 QFNDRYGHVSGDQCLKQISASMKAMPELQNKIF-ARYGGEEFIVFLPYTDATLAKEIAEL 508

Query: 199 LRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRN 253
           +RK I + QI +  S    HIT+S G+         +T  II +ADQALY AK++G+N
Sbjct: 509 MRKKIFHLQIPHEDSVHRQHITVSIGVCTTVPNNDTTTESIIIQADQALYEAKQAGKN 566


>gi|78358348|ref|YP_389797.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78220753|gb|ABB40102.1| diguanylate cyclase (GGDEF domain) [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 476

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 20/195 (10%)

Query: 79  SLLLGYISGSILKELFI----SYN-RISQLSRIDCLSGLLNHSAFIS--SLGSYNE---- 127
           +L +G++S  ++  L +     Y  RI  L+R D L+G  N         L +Y      
Sbjct: 290 TLAMGFVSTLVILALCVLAVNKYQARIEHLARTDPLTGAANRRELEERFDLAAYRASRDG 349

Query: 128 -KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
              SI+  D+D FK++ND  GH  GD+V+A ++  +         + R GG+EF    L 
Sbjct: 350 IPFSILIIDLDGFKEVNDRLGHLAGDEVLASMARVIRGRLRPTDLLARWGGDEF-IILLD 408

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
            +E+ A  LA   R+I       + + P I +  S+G+A     + ++++  RAD A+Y 
Sbjct: 409 GNEESARALA---RRI----SAAVCAAPDIPVGFSSGVAAYRDSDDLTSLTRRADNAMYQ 461

Query: 247 AKKSGRNRVVCFSDI 261
           AK  G + V+   D+
Sbjct: 462 AKARGGDCVMAAEDL 476


>gi|313497744|gb|ADR59110.1| Diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida BIRD-1]
          Length = 332

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 15/194 (7%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--- 123
           +N SL       +  L +++  + ++L    NR  +L+  D L+ + N     S+L    
Sbjct: 143 KNQSLEFQVAERTRELSWVNQQLQRQL--DENR--ELAERDALTRVANRYRLESALQLEC 198

Query: 124 ----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                + + LS++  D+D FK IND +GH  GD  +  +++ L         + R GG+E
Sbjct: 199 QRAQRFRQPLSLIAMDMDDFKPINDRYGHARGDAALVRVAESLRTCLRELDLLARWGGDE 258

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F      ++  EA  +A  LR+++E     +       +T+S G+ +    E    ++ R
Sbjct: 259 FVIVLPQTALGEALDVAARLRQVLE----RVEPVGDCRLTMSYGVVQWREGEDQHALLAR 314

Query: 240 ADQALYVAKKSGRN 253
           AD+ALY AK +G+N
Sbjct: 315 ADKALYRAKGTGKN 328


>gi|226357436|ref|YP_002787175.1| diguanylate cyclase domain protein; membrane protein [Deinococcus
           deserti VCD115]
 gi|226319426|gb|ACO47421.1| putative diguanylate cyclase domain protein; putative membrane
           protein [Deinococcus deserti VCD115]
          Length = 373

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 17/164 (10%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           QL+  D L+GL N   F   L S           + LS++F D+D FKQ+ND +GH VGD
Sbjct: 206 QLAYTDALTGLPNRRYFEQELDSALAAAGEVTPPQPLSVIFMDLDGFKQVNDTYGHDVGD 265

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILANDLRKIIENSQINIS 211
           +V+  ++++L   F     + RL G+EFAA     + E   AI +    ++ E     I+
Sbjct: 266 QVLKVVAERLRSTFRGGELIVRLSGDEFAALIPTATPEGMQAIRS----RVAEALGKPIA 321

Query: 212 -SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
             G  +HI  S G +    H   + T+++ AD A+Y   KS R 
Sbjct: 322 LGGQELHIAASLGFSVFPEHGTDVRTLLHHADTAMY-GMKSHRT 364


>gi|161520744|ref|YP_001584171.1| diguanylate cyclase [Burkholderia multivorans ATCC 17616]
 gi|189353073|ref|YP_001948700.1| putative diguanylate cyclase [Burkholderia multivorans ATCC 17616]
 gi|160344794|gb|ABX17879.1| diguanylate cyclase [Burkholderia multivorans ATCC 17616]
 gi|189337095|dbj|BAG46164.1| putative diguanylate cyclase [Burkholderia multivorans ATCC 17616]
          Length = 514

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 11/169 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNF 146
           ++   I  L+R D L+GL N     + L           +  +++++ D+D FK IND F
Sbjct: 331 LTEQHIRHLARHDALTGLPNRHELHAELERMLSRPPRRPDTAVAVMYLDLDGFKAINDRF 390

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+++  ++++L           R+GG+EF  A   ++    + +A  L   I ++
Sbjct: 391 GHQAGDELLMQVAERLGRALRDGALAARIGGDEFVVAVDDTTMDACSRVAAQLIAQI-SA 449

Query: 207 QINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
              +S G ++   IS GIA +  H  P   +I +AD ALY AK +G+ R
Sbjct: 450 PYTLSIGETVRFGISIGIALDDGHGTP-DELIRQADSALYDAKSAGKGR 497


>gi|17988999|ref|NP_541632.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 1
           str. 16M]
 gi|17984836|gb|AAL53896.1| diguanylate cyclase/phosphodiesterase domain 1 (ggdef) [Brucella
           melitensis bv. 1 str. 16M]
          Length = 212

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 19/208 (9%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISY-------NRISQLSRIDCLSGL 112
           G++   V  L  +++   I++ LG    S L+EL  SY       N +++++ +D L+GL
Sbjct: 10  GVKSDTVTILVRLLLPFLIAMPLGVFWFSRLEELERSYRTAVKRANELARVASVDPLTGL 69

Query: 113 LNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
           LN  +FI    + N+     +F   D+DY KQIND +GHP GD  I  ++  L     + 
Sbjct: 70  LNRRSFIQQFNAANKAGVRGWFLIVDVDYLKQINDQYGHPAGDDAIIAVAQALEDSLSSD 129

Query: 170 MFVGRLGGEEFAA-AALGSSEQEAAILAN-DLRK--IIENSQINISSGPSIHITISAGIA 225
             + R+GG+EF A    G+     ++L++  LR   ++   + N+ S     +T+S G  
Sbjct: 130 SLIARIGGDEFCAFVPKGAINDVDSVLSDISLRADGLLREKRPNVGS----SLTVSVGRI 185

Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRN 253
                +    ++  AD+ LY  KKS R 
Sbjct: 186 SCKTGQIFEEVLSIADEQLY-RKKSQRQ 212


>gi|50122772|ref|YP_051939.1| hypothetical protein ECA3851 [Pectobacterium atrosepticum SCRI1043]
 gi|49613298|emb|CAG76749.1| putative exported protein [Pectobacterium atrosepticum SCRI1043]
          Length = 534

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 77/157 (49%), Gaps = 10/157 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D ++ LLN     S+L  +    +  +++  DID FK+IND +GH VGD VI  LS  + 
Sbjct: 376 DPMTELLNRRGLDSALRYWQMGQKSFAVIALDIDRFKRINDTYGHDVGDNVIRDLSQLIR 435

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   + R GGEEF      ++   A  +A  LR+  + S I +       ITIS G
Sbjct: 436 SNSRDSDILCRSGGEEFLILLPETTLDVALDIAERLRQRTQESTIPVVGS----ITISLG 491

Query: 224 IA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +A      +   I      AD+ALY AK+ GRNRVV 
Sbjct: 492 VALWQPAVNDISIERTFKLADEALYKAKQEGRNRVVS 528


>gi|284990304|ref|YP_003408858.1| diguanylate cyclase/phosphodiesterase [Geodermatophilus obscurus
           DSM 43160]
 gi|284063549|gb|ADB74487.1| diguanylate cyclase/phosphodiesterase [Geodermatophilus obscurus
           DSM 43160]
          Length = 621

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 87/160 (54%), Gaps = 9/160 (5%)

Query: 107 DCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+GL N +  + +    L    +  S++  D+D FK +ND+ GH VGD++++ +  ++
Sbjct: 189 DPLTGLANRTLLLETTARMLAQRPDPTSVLLLDLDDFKDVNDSRGHAVGDQLLSTVGRRI 248

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                +   V RLGG+EFA    GS+   A +    L  + +   ++   G ++H+ +S 
Sbjct: 249 QGCVRSVDQVARLGGDEFAVVVAGSARIAAEVGERVLAALADPVVVD---GRALHVRVSI 305

Query: 223 GIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           G+A+          T++  AD A+Y+AK SG+NRVV +++
Sbjct: 306 GVADSTSVGDHSAGTLLRNADLAMYLAKSSGKNRVVVYAE 345


>gi|221212627|ref|ZP_03585604.1| WspR [Burkholderia multivorans CGD1]
 gi|221167726|gb|EEE00196.1| WspR [Burkholderia multivorans CGD1]
          Length = 345

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 83/177 (46%), Gaps = 14/177 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+GL N       L +          +LS++  D+D+FK  N
Sbjct: 161 QQLLEANLELRRLMHSDGLTGLSNRRYLDEYLAAEWRRCTRERAELSLLMIDVDHFKLYN 220

Query: 144 DNFGHPVGDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           D +GH  GD V   +A    Q +   G      R GGEEFA    G+S   A +L   +R
Sbjct: 221 DTYGHVSGDHVLRQVAATIAQCLRPSGD--LAARFGGEEFAVVMPGTSAGAARLLGEKIR 278

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
             ++  ++      + H+T+S G A        P + +I  AD+ALY AK  GRNRV
Sbjct: 279 LAVDALRLEHGQSTAGHVTVSIGGASIVPAPGLPTTALIEAADRALYRAKHDGRNRV 335


>gi|229917551|ref|YP_002886197.1| diguanylate cyclase with PAS/PAC sensor [Exiguobacterium sp. AT1b]
 gi|229468980|gb|ACQ70752.1| diguanylate cyclase with PAS/PAC sensor [Exiguobacterium sp. AT1b]
          Length = 686

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 11/171 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
            ++  L+  D L+ L N   F++ L    ++       L+++  D+D FKQIND FGH V
Sbjct: 517 KQLKHLAYHDTLTDLPNRRFFLAYLEEAIDRTEFEQGELAVLALDVDRFKQINDTFGHDV 576

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+++  L+ +L  V      + RLGG+EFA     +   +   L     KII+  Q   
Sbjct: 577 GDELLRQLARRLTSVLRKQDMIARLGGDEFAVLIRFN---DPCALHRVAEKIIQALQRPW 633

Query: 211 SSGPSIHITISA-GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                  IT S+ G A       I  ++ RAD ALY AK  GRN+     D
Sbjct: 634 EIDQHTFITTSSVGGARYVKGLSIKQLLKRADLALYEAKAGGRNQYALAKD 684


>gi|167590560|ref|ZP_02382948.1| diguanylate cyclase [Burkholderia ubonensis Bu]
          Length = 238

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 11/163 (6%)

Query: 100 ISQLSRIDCLSGLLN----HSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVG 151
           I  L+R D L+GL N    H+     L     +     ++++ D+D FK IND FGH  G
Sbjct: 60  IRHLARHDALTGLPNRHELHAELKRMLARRTRRHGLAPAVMYLDLDGFKAINDRFGHHAG 119

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINI 210
           D V+  ++ +L         V R+GG+EF  A   ++ Q  +A  A  +RKI  ++   +
Sbjct: 120 DDVLTQVAARLSETLPQGELVARIGGDEFVVAIDDTTMQACSAQAAQIIRKI--SAPYTL 177

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           S G ++ + IS GIA     +    +I  AD ALY AK SG+ 
Sbjct: 178 SIGETVSLGISIGIALDRDCDAPEELIRHADSALYEAKSSGKG 220


>gi|195953816|ref|YP_002122106.1| diguanylate cyclase [Hydrogenobaculum sp. Y04AAS1]
 gi|195933428|gb|ACG58128.1| diguanylate cyclase [Hydrogenobaculum sp. Y04AAS1]
          Length = 376

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 4/157 (2%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           S ID L+GL N    + ++ +  E   +   DID+FK+IND +GH  GD V+  ++  + 
Sbjct: 218 SYIDELTGLPNRK-LLKNIKNRQEDYVVAMLDIDFFKRINDTYGHDAGDIVLKEVAQAIK 276

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   V R GGEEF    L     EA +   +  +I   S     +  +I +++S G
Sbjct: 277 SSIREDDIVLRWGGEEF-LILLKCKHHEACLKTLERLRIKIKSIDININNYNIKLSVSIG 335

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           I  +   + +   I +AD+ALY AK+SGR+R+  + D
Sbjct: 336 ICLKA--KNLDEGIKKADEALYKAKRSGRDRIEIYDD 370


>gi|118443169|ref|YP_878465.1| diguanylate cyclase/phosphodiesterase [Clostridium novyi NT]
 gi|118133625|gb|ABK60669.1| Diguanylate cyclase/phosphodiesterase domain 2 [Clostridium novyi
           NT]
          Length = 192

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 14/174 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S+L +L++   ++   +  D ++G+LN  A +  L          NE + I F D+D  K
Sbjct: 20  SVLNKLYLEKEKLKYYANTDVMTGVLNRRAGLKLLNKEFDLSKISNENIVICFADVDKLK 79

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND FGH  GDKV+ F++  L        F+ R+GG+EF      +S ++   + N + 
Sbjct: 80  MINDTFGHKEGDKVLKFVAKTLRDSIRKDDFIIRMGGDEFLIVFPRTSIKDVGKICNRID 139

Query: 201 KIIENSQINISSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKS 250
           +I+E  +IN +S    ++ +S G  E      +K  +S +I  AD  +Y  K+ 
Sbjct: 140 EILE--EINKNS-CDYNLNLSYGFYEYNSKVDNKMTLSDLIKSADMEMYKKKRE 190


>gi|21492856|ref|NP_659931.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|190894094|ref|YP_001984388.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|21467281|gb|AAM54944.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|190699755|gb|ACE93838.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|327192457|gb|EGE59412.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 852

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/180 (28%), Positives = 92/180 (51%), Gaps = 13/180 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           + EL  S  +I Q++  D ++ L N   F       +S   S   +  ++  DID+FK +
Sbjct: 401 VTELNASREKIRQMAFYDPVTSLPNRLLFNERLQKVVSDASSQRRRTGVMLIDIDHFKVV 460

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLR 200
           ND  GHPVGD+++  ++ +L         V RLGG+EFA     + +++    +  + L 
Sbjct: 461 NDTMGHPVGDQLLCQVATRLKKSVRDLDTVARLGGDEFAILLPEIQTTDDLDWVACSILE 520

Query: 201 KIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  E+  ++   G  ++++ S GIA        ++ ++  AD A+Y+AK+SGRN    +S
Sbjct: 521 RFKESFLLD---GKEVYVSCSVGIAISPDDSTDVNDLVKYADSAMYLAKRSGRNSFRFYS 577


>gi|327398277|ref|YP_004339146.1| diguanylate cyclase [Hippea maritima DSM 10411]
 gi|327180906|gb|AEA33087.1| diguanylate cyclase [Hippea maritima DSM 10411]
          Length = 627

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 11/162 (6%)

Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N        + F +++   N    I+  D+D+FKQ+ND +GH VGD+V+  + 
Sbjct: 459 DPLTGLYNRRFLDEFAATFSATVKRRNTLAGILMCDVDFFKQVNDVYGHNVGDEVLRGVV 518

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +           R GGEEF        E+    +A  +R  +E ++I +  G  I  T
Sbjct: 519 RAIAKSIRESDIAVRFGGEEFLVLLQDVDEKSVLEIAERIRSDVEKTEITV-QGNVIKKT 577

Query: 220 ISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +S G++   +  K     I + +D A+Y AK++GRNRVV F 
Sbjct: 578 LSIGVSIFPKDSKNLWQCIKF-SDVAMYKAKEAGRNRVVRFE 618


>gi|299136567|ref|ZP_07029750.1| response regulator receiver modulated diguanylate cyclase
           [Acidobacterium sp. MP5ACTX8]
 gi|298601082|gb|EFI57237.1| response regulator receiver modulated diguanylate cyclase
           [Acidobacterium sp. MP5ACTX8]
          Length = 313

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 79/161 (49%), Gaps = 15/161 (9%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N SA ++ L    E+       +SI+  DID+FKQIND  GHPVGD+V+   +
Sbjct: 142 DGLTQLWNRSAVLALLQKAIERSMNGGNAISILLCDIDHFKQINDGHGHPVGDEVLEQFA 201

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHI 218
            +L        +VGR GGEEF               A  +R II        +G  ++  
Sbjct: 202 LRLKNGVRATDWVGRYGGEEFLLVLNDCKAAHLWARAEHIRTIIAQEPFATKAGFLNVST 261

Query: 219 TISA----GIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +I A    G+A     E   +++ +AD ALY AK  GRNRV
Sbjct: 262 SIGAITFDGLASSMSLE---SMVKQADTALYRAKSLGRNRV 299


>gi|222529500|ref|YP_002573382.1| diguanylate cyclase with GAF sensor [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222456347|gb|ACM60609.1| diguanylate cyclase with GAF sensor [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 557

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 82/173 (47%), Gaps = 12/173 (6%)

Query: 97  YNRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           Y ++  ++ +D L+G  N             +S G Y   +SI  FD+D FK++ND +GH
Sbjct: 382 YQQMRSMAMVDGLTGAFNRIYLYEVLEREIQASAGRY--PISIALFDVDNFKKLNDTYGH 439

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GDKV+  +             V R GGEEF          EA  +   +R+ IE S+I
Sbjct: 440 LFGDKVLQTIVRIAREKVRKGDIVARYGGEEFIIVFNHLESNEAYKVVERIRRAIE-SEI 498

Query: 209 NISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              +     +T+S GIA    H + +  +I  AD A+Y AK SG+N  V ++ 
Sbjct: 499 IEDNLIQTRVTVSFGIASYPLHADNVKDLIKCADIAMYRAKSSGKNCTVVYNQ 551


>gi|91779798|ref|YP_555006.1| diguanylate cyclase [Burkholderia xenovorans LB400]
 gi|91692458|gb|ABE35656.1| Putative diguanylate cyclase (GGDEF domain) [Burkholderia
           xenovorans LB400]
          Length = 409

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 20/183 (10%)

Query: 93  LFISYNRISQL----SRIDCLSGLLNHS---------AFISSLGSYNEKL----SIVFFD 135
           L ++  R  QL    ++ D L+G LN S         A    +  + + +    S++  D
Sbjct: 209 LLMAAERSHQLLFDHAQRDPLTGALNRSGLRLSYERVAAARGMARHADTMLGTVSLIVID 268

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D+FK IND  GH  GD V+   +        T   + R GG+EF      ++  EA  +
Sbjct: 269 LDHFKAINDTHGHTTGDDVLRLFATTARDDLRTGDTLARYGGDEFVVMLPHTAGGEALAI 328

Query: 196 ANDLRKIIENSQINISSGPSIHI--TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGR 252
           A  +R    N+   + +  ++ +  T+S GIA      + + TI+ RAD+ALY +K+ GR
Sbjct: 329 AERIRVAFANATGALGTLGTLAVQPTLSVGIATGSLAGDTLDTILQRADEALYRSKREGR 388

Query: 253 NRV 255
           NRV
Sbjct: 389 NRV 391


>gi|52840285|ref|YP_094084.1| sensory box protein [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52627396|gb|AAU26137.1| sensory box (GGDEF/EAL domain) regulatory protein [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 985

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 4/137 (2%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           N+KL+++F D+D FKQIND+ GH +GD ++  LS++ + +      + RLGG+EF     
Sbjct: 589 NQKLAVLFLDLDEFKQINDSLGHAIGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILE 648

Query: 186 G-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQA 243
               +++A  +A   R+I   SQ  +     + ++ S GIA    H +   T++  AD A
Sbjct: 649 NIMQDKDAESIAKKCREIC--SQPFVIESQELLVSTSIGIAIYPEHGKDAKTLMRNADTA 706

Query: 244 LYVAKKSGRNRVVCFSD 260
           +Y +K  G+N    F +
Sbjct: 707 MYQSKIRGKNNWTVFQN 723


>gi|152967529|ref|YP_001363313.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151362046|gb|ABS05049.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 731

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           S   + +L++ D L+GL N S     L       +  + +++V  D+D FK +ND  GH 
Sbjct: 296 STGELVRLAQCDSLTGLANRSVMDLRLVEALETATPTDAVALVLLDLDRFKLVNDTLGHQ 355

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQI 208
           +GD ++  ++ +L         + RLGG+EF     G    EA +I+A DL + +  + +
Sbjct: 356 IGDALLRQVAVRLQDAVPPGAVLARLGGDEFVVMVPGVDRPEAVSIMARDLLRRL-RAPM 414

Query: 209 NISSGPSIHI-TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +   P   + T SAGIA   H      +   AD ALY AK  GR+RV  +
Sbjct: 415 MLPGLPEPFVCTSSAGIAV-GHSGTADDLFRSADMALYRAKDGGRDRVALY 464


>gi|332304853|ref|YP_004432704.1| diguanylate cyclase with PAS/PAC sensor [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172182|gb|AEE21436.1| diguanylate cyclase with PAS/PAC sensor [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 327

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 104/227 (45%), Gaps = 26/227 (11%)

Query: 53  IGLTPFYGLEYILVE--NLSLVIISITISLLLGYISGSI---------LKELFISYNRIS 101
           I L   +G + +LVE  + + + + +++S L   I+ S          L +    Y  + 
Sbjct: 99  IDLPLSHGPKEVLVERTDRTWLEVDLSVSCLPASITESSPFYVGVMHSLTKHKSEYGELR 158

Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL N      +L        +  + +S++  D+DYFK  ND FGH  GDK 
Sbjct: 159 RLASTDHLTGLANRHNLEKTLQKSWLECLNTEQAISLILIDVDYFKLFNDQFGHINGDKC 218

Query: 155 IAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR---KIIENSQINI 210
           +  ++  +            R GGEEFA          A I+A D++    I++ S++ +
Sbjct: 219 LQKIAKTIEQCLPANDCMAARYGGEEFAVILPRLPSVSAEIVAKDIQNQINILKFSELGL 278

Query: 211 SSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRV 255
            S  S  +++S GIA            +I  AD ALY AK  GRNR+
Sbjct: 279 PS--SFRVSVSQGIATELGGRYRTSEALICAADTALYRAKSEGRNRI 323


>gi|325915850|ref|ZP_08178149.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325537971|gb|EGD09668.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 573

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 76/159 (47%), Gaps = 12/159 (7%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      SL             LS++  D+D+FKQ ND+ GH  GD ++A + 
Sbjct: 402 DALTGLYNRRYLEESLSHELARCARRGLPLSVLMLDVDHFKQFNDSQGHAGGDLLLAAVG 461

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--H 217
           + L+          R GGEEF      +   EA  LA  +R  I  + + +S G      
Sbjct: 462 ELLLTRLRAEDVACRYGGEEFTVILPEADGDEAMRLAEQIRSHI--AALAVSDGQRALPR 519

Query: 218 ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +T S G+A      E  +++I +AD ALY AK  GRNRV
Sbjct: 520 VTASIGVASYPADGELGASLIQKADAALYAAKHRGRNRV 558


>gi|225387544|ref|ZP_03757308.1| hypothetical protein CLOSTASPAR_01298 [Clostridium asparagiforme
           DSM 15981]
 gi|225046380|gb|EEG56626.1| hypothetical protein CLOSTASPAR_01298 [Clostridium asparagiforme
           DSM 15981]
          Length = 540

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 17/160 (10%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           S  D L+GL N  +    L  +N +    L++++ D+DYFK +ND +GH VGD  +   +
Sbjct: 382 SNTDFLTGLYNRRSLYQYL--HNNRNGRLLNLLYVDLDYFKHVNDTYGHKVGDDALILTA 439

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAILANDLRKIIENSQINISSGP 214
             L   F    F+ R+GG+EF    LG +++E     A  L + L  +  +++   S   
Sbjct: 440 KVLRECFKNE-FIARIGGDEFLIVQLGEAQREALESKAQQLLDQLSDVFGSTENMDSLSA 498

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           SI I +  G  +R     I  +I ++D ALY AK+SGR +
Sbjct: 499 SIGI-VQNGAPDR----DIDLLIQQSDAALYQAKESGRGK 533


>gi|254470638|ref|ZP_05084041.1| diguanylate cyclase/phosphodiesterase [Pseudovibrio sp. JE062]
 gi|211959780|gb|EEA94977.1| diguanylate cyclase/phosphodiesterase [Pseudovibrio sp. JE062]
          Length = 972

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 6/138 (4%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AA 184
           +E   I++ D+D FK IND+ GH VGDK++  ++  L         V RLGG+EFA  + 
Sbjct: 559 DEHFGILWMDLDEFKTINDSLGHAVGDKLLVHVAKILREKVTNKEMVARLGGDEFAILSK 618

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQ 242
           L +S ++   LA ++ K++ +       G  I +  S GIA   R H+  +  +I  AD 
Sbjct: 619 LPASREQLEQLAKEVLKVVASP--CFLEGHEIVVAASVGIAMFSREHQN-VDELIRFADL 675

Query: 243 ALYVAKKSGRNRVVCFSD 260
           ALY AK  GRN    F D
Sbjct: 676 ALYQAKNDGRNTFRFFED 693


>gi|126669004|ref|ZP_01739941.1| sensory box protein [Marinobacter sp. ELB17]
 gi|126626520|gb|EAZ97180.1| sensory box protein [Marinobacter sp. ELB17]
          Length = 664

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 15/171 (8%)

Query: 100 ISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I Q +  D L+GL N           I      N+ ++ +F D+D FK IND  GH  GD
Sbjct: 323 IWQQAHYDSLTGLANRKMANDKLEQAIKVADRSNKSIAFLFLDLDLFKHINDTQGHDFGD 382

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQINI 210
            ++  +S +L   F     + R GG+EF      L S +Q   I ++ ++K+ E  ++  
Sbjct: 383 MLLVEVSKRLRSYFREIDTLARFGGDEFVIIVGGLDSPDQVDLIASDLVKKMAEPFKVGQ 442

Query: 211 SSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++HI+ S GI    +   +P+  I+  ADQA+Y AK +G NR   F+
Sbjct: 443 E---TVHISTSVGITIYPQDASDPVE-ILRHADQAMYAAKNNGGNRFQYFT 489


>gi|152995585|ref|YP_001340420.1| PAS/PAC sensor-containing diguanylate cyclase [Marinomonas sp.
           MWYL1]
 gi|150836509|gb|ABR70485.1| diguanylate cyclase with PAS/PAC sensor [Marinomonas sp. MWYL1]
          Length = 292

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 76/131 (58%), Gaps = 6/131 (4%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS++F DID FK IND +GH VGD ++  ++ +L         VGRLGG+EF       +
Sbjct: 161 LSVLFIDIDGFKDINDGYGHAVGDLLLQLIAKRLGGCVRKSDTVGRLGGDEFLIILNKVN 220

Query: 189 EQE-AAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALY 245
             E AA++A  +R  +  S++ +  G ++ ++ S GIA      KEP+  ++  AD A+Y
Sbjct: 221 NAESAALVAEKIRAAL--SEVFVVEGSTLSVSASIGIASYPENGKEPLD-LVQSADHAMY 277

Query: 246 VAKKSGRNRVV 256
            AK +G ++V+
Sbjct: 278 QAKNNGGDKVI 288


>gi|26991094|ref|NP_746519.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida KT2440]
 gi|24986130|gb|AAN69983.1|AE016636_6 sensory box protein [Pseudomonas putida KT2440]
          Length = 332

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 15/194 (7%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--- 123
           +N SL       +  L +++  + ++L    NR  +L+  D L+ + N     S+L    
Sbjct: 143 KNQSLEFQVAERTRELSWVNQQLQRQL--DENR--ELAERDALTRVANRYRLESALQLEC 198

Query: 124 ----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                + + LS++  D+D FK IND +GH  GD  +  +++ L         + R GG+E
Sbjct: 199 QRAQRFRQPLSLIAMDMDDFKPINDRYGHARGDAALVRVAESLRTCLRELDLLARWGGDE 258

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F      ++  EA  +A  LR+++E     +       +T+S G+ +    E    ++ R
Sbjct: 259 FVIVLPQTALGEALDVAARLRQVLE----QVEPVGDCRLTMSYGVVQWREGEDQHALLAR 314

Query: 240 ADQALYVAKKSGRN 253
           AD+ALY AK +G+N
Sbjct: 315 ADKALYRAKGTGKN 328


>gi|146280275|ref|YP_001170431.1| diguanylate phosphodiesterase [Rhodobacter sphaeroides ATCC 17025]
 gi|145558516|gb|ABP73126.1| diguanylate phosphodiesterase [Rhodobacter sphaeroides ATCC 17025]
          Length = 936

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 7/159 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +++L   D L+GL N S     L +        ++++F D+D FK +ND+ GH VGD ++
Sbjct: 500 LARLRHYDPLTGLANRSFLQECLANATLAGGPDVALLFIDLDRFKAVNDSMGHGVGDGLL 559

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  LV        V RLGG+EF     G        LA  LR++++  Q    +G  
Sbjct: 560 IEVAHSLVASVRPEDLVVRLGGDEFVVLCHGLDRAAVTGLAERLRQVLD--QPFEVTGRK 617

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            HI+ S GIA       +  ++  AD A+Y AKK+G NR
Sbjct: 618 CHISASIGIAMSDSIGELD-LVRAADIAMYAAKKNGGNR 655


>gi|315181586|gb|ADT88499.1| periplasmic/7TM domain sensor diguanylate cyclase [Vibrio furnissii
           NCTC 11218]
          Length = 612

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 14/168 (8%)

Query: 106 IDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+G+LN            S   S ++   +V  D+D FK +ND +GH  GD ++  L
Sbjct: 439 VDSLTGILNRRGLNRYFETLKSRASSADDTAIVVLIDLDEFKPVNDRYGHEAGDMLLQTL 498

Query: 159 SDQLVVVFGTPMFVGRLGGEEFA---AAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
           + ++         +GRLGG+EF    A   G S+ E   +   L   I +  I + S   
Sbjct: 499 AQRMRSRLPEHAGLGRLGGDEFVALFAGQTGRSKHELEQIGVQLLAAI-SEPIALHSDVV 557

Query: 216 IHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSDI 261
           +H+  S G++  C   P S  T +  AD A+Y  K +G+N VV  SD+
Sbjct: 558 VHVQASIGVS-LCTIAPHSFATALRAADTAMYDIKHNGKNGVVVVSDV 604


>gi|307727099|ref|YP_003910312.1| diguanylate cyclase [Burkholderia sp. CCGE1003]
 gi|307587624|gb|ADN61021.1| diguanylate cyclase [Burkholderia sp. CCGE1003]
          Length = 531

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 10/166 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL N     + L           + LS +F DID+FK+ ND +GH  GD+ 
Sbjct: 352 RLAATDPLTGLSNRRVLDNRLDEEWRRARRTGQPLSALFIDIDHFKRFNDTYGHASGDEA 411

Query: 155 IAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++ +++ +       +  V R GGEEFA     +S   A  +A  +R+ ++   I     
Sbjct: 412 LSAVAECISSTVRRAVDLVARYGGEEFAVILPDTSADGARAVAEKIRRSVQAQDILHGGA 471

Query: 214 PSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             + +T+S G A            ++  AD+ LYVAK +GRNRV C
Sbjct: 472 DPVTVTVSVGCATIVPAQGANALDLLAAADRQLYVAKAAGRNRVAC 517


>gi|228911188|ref|ZP_04074993.1| Sensory box protein [Bacillus thuringiensis IBL 200]
 gi|228848364|gb|EEM93213.1| Sensory box protein [Bacillus thuringiensis IBL 200]
          Length = 735

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 355

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD ++  ++++L     +   V R GG+EF         +++AI   +    I N
Sbjct: 356 LGHDVGDLLLIEVANRLRGCLRSKDVVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 415

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I  G  + IT S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 416 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 469


>gi|120609587|ref|YP_969265.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
 gi|120588051|gb|ABM31491.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
          Length = 424

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 101/212 (47%), Gaps = 33/212 (15%)

Query: 66  VENLSLVIISITIS---LLLGYIS--GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +E L  V +++ +    LL+G +     +L++       I++ +R+D L G LN  + ++
Sbjct: 201 LEALHFVALALALPAYVLLMGRVRLLHRLLQKTSSEMKSIAESARLDAL-GCLNRRSILA 259

Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           +L    +        L +   D+D+FK+IND  GH  GD+V+   S     +     F G
Sbjct: 260 ALEEQKQLADESGIPLCLAVVDLDHFKRINDEMGHLCGDEVLRTFSQLAQQIVRGDDFFG 319

Query: 174 RLGGEEF--------AAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           R GGEEF           AL + E+  + + ++D ++ +              +T+S G+
Sbjct: 320 RYGGEEFLLIFPATPLLPALNTCERIRSQVESHDWKEPLRG-----------RVTVSVGV 368

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +    E +     RAD A+Y+AK+ GRN+VV
Sbjct: 369 TQYVLGESVLEFFSRADTAMYLAKQGGRNQVV 400


>gi|59714195|ref|YP_206970.1| two component response regulator protein [Vibrio fischeri ES114]
 gi|59482443|gb|AAW88082.1| two component response regulator, GGDEF domain protein [Vibrio
           fischeri ES114]
          Length = 299

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 88/170 (51%), Gaps = 21/170 (12%)

Query: 106 IDCLSGLLNHSAF---ISSLGSYNEKL----SIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+ LLN   F   + +  + +++L    S++ FDID+FK  NDN+GH  GD+V+  +
Sbjct: 135 LDGLTNLLNRRMFDFDLENRWAESQRLQANFSLIMFDIDHFKLYNDNYGHSAGDEVLVRV 194

Query: 159 SDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +  L+         V R GGEEF      +  ++    A  LR+ I +  +NI+   S H
Sbjct: 195 AKALMKTLQRKTDRVYRYGGEEFILIQFDTDLEQLRQTAELLRQCIYD--LNITHDFSFH 252

Query: 218 --ITISAGI----AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             I+IS G     AE+   +PI  ++   DQ LY AKK GRN   C S I
Sbjct: 253 KRISISVGATLINAEQI--QPIPYLLEITDQQLYKAKKQGRN---CVSTI 297


>gi|27366819|ref|NP_762346.1| response regulator [Vibrio vulnificus CMCP6]
 gi|320158703|ref|YP_004191081.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           vulnificus MO6-24/O]
 gi|27358386|gb|AAO07336.1|AE016809_98 Response regulator [Vibrio vulnificus CMCP6]
 gi|319934015|gb|ADV88878.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           vulnificus MO6-24/O]
          Length = 338

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 77/135 (57%), Gaps = 10/135 (7%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGS 187
           +S++ FDID+FK+ ND FGH  GD+ +  +++ +  +       + R+GGEEFA     +
Sbjct: 196 ISMIIFDIDHFKKYNDTFGHQQGDECLRMIAEAIRSMKLRCLDKIARIGGEEFAVILPET 255

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEP-IST----IIYRAD 241
             + A  +AN +R  IE   I  S   ++ ++T S G+   C   P I T    ++ +AD
Sbjct: 256 EMEGAKHVANRIRTTIEELSITHSHHATLPYVTASLGV---CSIVPEIDTNPRLLLKKAD 312

Query: 242 QALYVAKKSGRNRVV 256
           +ALY AK++GRNR+ 
Sbjct: 313 EALYRAKRTGRNRIA 327


>gi|331009696|gb|EGH89752.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 712

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 18/187 (9%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           ++++  +  S++++L   Y ++ + +  D L+GLLN      ++          ++ L +
Sbjct: 254 AMVMTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVEGMLLRKEQTDKYLVV 310

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF      L   E
Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247
           Q A I    + ++    Q++   G  I +  S GIA    C    +  ++  AD A+Y A
Sbjct: 371 QAAKIAEKLIERVSGRRQVD---GVDITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 426

Query: 248 KKSGRNR 254
           K++GR +
Sbjct: 427 KRAGRQQ 433


>gi|326315092|ref|YP_004232764.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323371928|gb|ADX44197.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 495

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 98/205 (47%), Gaps = 18/205 (8%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           ++PF  LE        L  +S+ +S L+  I+  ++    ++   +  +++ D L+GL N
Sbjct: 278 MSPFLKLEV-------LYAVSVLMSALVSIIAVKVVASRVVTP--LEDVAQKDALTGLAN 328

Query: 115 HSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
              F + L    + L       S++  D+D FK +ND +GH  GD V+   + ++  +  
Sbjct: 329 RRTFEARLQRAEQDLQRSGTGFSVMLMDLDKFKFVNDTYGHDAGDVVLKEAASRIQKIIR 388

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-E 226
               + RLGG+EFA        Q  + +A  + +++    I +  G +  +  S GIA  
Sbjct: 389 ASDTLARLGGDEFAILVRTDDPQTLSHIATAIVEVVRQP-IPLKPGLAAEVGTSIGIAFA 447

Query: 227 RCHKEPISTIIYRADQALYVAKKSG 251
             H    + +++ ADQA+Y AK+ G
Sbjct: 448 PGHSRHGAEVVHCADQAMYTAKRRG 472


>gi|262166357|ref|ZP_06034094.1| GGDEF family protein [Vibrio mimicus VM223]
 gi|262026073|gb|EEY44741.1| GGDEF family protein [Vibrio mimicus VM223]
          Length = 505

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 108/241 (44%), Gaps = 20/241 (8%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVE----NLSLVIISITISLLLGYISGSI--- 89
           +F ++V+++ N+++    + P      +L +       +   S  IS  +   + +I   
Sbjct: 265 LFFSSVMYVVNLWVVVTLIKPITAANQVLQQFKTSGGKMPDASTFISAEMKEFASTINHI 324

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQIND 144
           + +L  S   +   S  D L+ + N       L  Y        L +   DIDYFK  ND
Sbjct: 325 VTQLDESQQVLRWQSEHDPLTRISNRRYLEKQLKGYLSDRPCRYLVLNLIDIDYFKPFND 384

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KI 202
           NFGH  GD+ +  ++  L  + F     V R GGEEF       SE +A   A  +  K+
Sbjct: 385 NFGHLAGDEALCSVAQALQAIEFDGEKIVTRFGGEEFCVVLASDSELDAEQFAQQIHTKV 444

Query: 203 IENSQINISSGPSIHITISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            E +  N       ++T+S G    I+ R   +   ++ ++AD ALY AK+SGRNR V  
Sbjct: 445 AELAIANPQDSDFQYLTVSIGGVYAISPRM--DAYLSLFHQADMALYEAKESGRNRYVVR 502

Query: 259 S 259
           S
Sbjct: 503 S 503


>gi|291614799|ref|YP_003524956.1| diguanylate cyclase with PAS/PAC sensor and hemerythrin-like
           metal-binding domain [Sideroxydans lithotrophicus ES-1]
 gi|291584911|gb|ADE12569.1| diguanylate cyclase with PAS/PAC sensor and hemerythrin-like
           metal-binding domain [Sideroxydans lithotrophicus ES-1]
          Length = 499

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 74/159 (46%), Gaps = 15/159 (9%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N       L             L++ + D+D FKQ+ND  GH  GD V+  ++
Sbjct: 340 DALTGLPNRRLLQDRLEQALTRSKRGGRMLAVCYLDLDGFKQVNDTLGHDAGDDVLRLIA 399

Query: 160 DQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            +LV V      V RLGG+EF      L   E    +L   L+ I +   I+   G    
Sbjct: 400 GRLVKVLRGEDTVVRLGGDEFVLLLGDLDGEENVVQLLTRLLQDIAQPMSIH---GSRAQ 456

Query: 218 ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +T S G+    R H EP   ++  AD+A+  AK+ G++R
Sbjct: 457 VTASIGVTFYPRDHSEP-EVLLKHADEAMLAAKREGKSR 494


>gi|239831061|ref|ZP_04679390.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239823328|gb|EEQ94896.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 707

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 9/163 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF---ISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            R++ ++  D L+GL N + F   + SL   G  +E  ++ + DID+FK IND+ GH  G
Sbjct: 266 ERMAHIAMHDSLTGLPNRAYFAHHVESLLKKGGDSEPFALFYLDIDHFKNINDSIGHQAG 325

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  ++ +L  +     F+ RLGG+EFA      +  + A+ A+ +    ++S   + 
Sbjct: 326 DQLLQEVARRLKQITTPDEFIARLGGDEFAIVYRSGTLGQIAMFADRVLSAFQDSFKLV- 384

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
            G S  +T S GI++   H +    ++  AD ALY +K  GR 
Sbjct: 385 -GNSEFVTCSMGISQAPLHGDNPDALMRNADLALYASKSGGRR 426


>gi|254502205|ref|ZP_05114356.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
 gi|222438276|gb|EEE44955.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
          Length = 513

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 21/209 (10%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSY 125
           L ++   IS+++    G +   L  S  R    +  D L+GL N   F   L     G  
Sbjct: 298 LAVLIAAISVIVARRIGRLSSTLEQSERRNHYFAHHDSLTGLPNRHHFSDRLAYALDGLP 357

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           +   +++  D+D FK +ND  GH  GD V+   + +L  +      VGR+GG+EF    L
Sbjct: 358 DNGFAVIACDLDKFKPVNDTHGHEAGDIVLRVTASRLQDIISDKGVVGRIGGDEFVLLLL 417

Query: 186 GSSEQEA------AILANDLRKIIENSQINISSGPSIHITIS--AGIAERCHKEPISTII 237
              +Q         ILA   + I  N + ++S G S+ I ++  +G++E+        +I
Sbjct: 418 HHRDQAELQAIADKILATVAKPIKFNPEQSVSIGISLGIALAPDSGMSEKH-------LI 470

Query: 238 YRADQALYVAKKSGRNRVVCFSDIENNTC 266
             AD ALY+AK +GRN    F+  E +T 
Sbjct: 471 RAADTALYLAKDAGRN-TYAFAHTEPDTA 498


>gi|193215431|ref|YP_001996630.1| diguanylate cyclase/serine/threonine protein kinase [Chloroherpeton
           thalassium ATCC 35110]
 gi|193088908|gb|ACF14183.1| diguanylate cyclase and serine/threonine protein kinase with TPR
           repeats [Chloroherpeton thalassium ATCC 35110]
          Length = 611

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFK 140
            +L++L +    + + +R D L+GL N                 YN  L +   DID+FK
Sbjct: 436 QLLEQLRVQTIALEKQTREDPLTGLYNRRYLTFLLLQEFERAKRYNSALGVAMADIDHFK 495

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND F H VGD+V+  ++   +        V R GGEEF      +   +A   +  +R
Sbjct: 496 NVNDTFSHQVGDEVLKIIAKIFIQNCRIIDTVARYGGEEFVFFFPETPLDKAVSASEKIR 555

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           K + N   N S    + +T+S G+           ++  AD+ LY AK +GRNR VC+
Sbjct: 556 KAVANYDWN-SVEKGLTVTVSIGVTANIDVPSHEKMLSLADEKLYEAKATGRNR-VCY 611


>gi|189424819|ref|YP_001951996.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter lovleyi SZ]
 gi|189421078|gb|ACD95476.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter lovleyi SZ]
          Length = 473

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 12/158 (7%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID LSGL N+          I     Y+ +LS+VF D+D FK +ND +GH VG  ++  L
Sbjct: 298 IDELSGLFNYRYLKVALEREIKRADRYSTQLSVVFLDLDNFKGVNDTYGHLVGSNLLKEL 357

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
              L         V R GG+E+    + +  + A  +   +R++IE        G  I +
Sbjct: 358 GALLKKSVREVDVVIRYGGDEYTIILVETGAETAHCVGERIRRMIEKHSFLSLEGYQIQL 417

Query: 219 TISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRN 253
           T S G+A  C+ E    +  ++  AD+A+Y  K SG+N
Sbjct: 418 TASLGLA--CYPEDTTGLEELLSMADKAMYAGKASGKN 453


>gi|91204585|emb|CAJ70813.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 505

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 74/146 (50%), Gaps = 6/146 (4%)

Query: 113 LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           L HS  I     +N   SI   DID+FK  ND +GH  GD+++  L+  L         V
Sbjct: 215 LEHSKAIR----HNLHFSIAMIDIDHFKYYNDTYGHLFGDEILKKLAYILKSNVRYSDIV 270

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHK- 230
            R GGEEFA    G  +  A ++ + LR +++    + ++ G    +TI+AG+A      
Sbjct: 271 SRYGGEEFAILLPGMDKNSATLVIDKLRDVVKRILSLEVAEGKVECVTITAGVAGYPEDG 330

Query: 231 EPISTIIYRADQALYVAKKSGRNRVV 256
             +  I+  AD+ LY+ K  GRNRV+
Sbjct: 331 NSVKQILSVADKYLYIGKSCGRNRVI 356


>gi|27381656|ref|NP_773185.1| hypothetical protein bll6545 [Bradyrhizobium japonicum USDA 110]
 gi|27354825|dbj|BAC51810.1| bll6545 [Bradyrhizobium japonicum USDA 110]
          Length = 892

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 33/179 (18%)

Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I++L+  D L+GL N        SA I +  +    +++ F D+D+FK +ND  GH  GD
Sbjct: 439 IARLAYHDILTGLPNRAQLRHLISAAIDACPT-GSHVALAFLDVDHFKDVNDTLGHAAGD 497

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA------------AALGSSEQEAAILANDLR 200
           +++  L+ +L    G    +GRLGG+EF               A G +E  AA L    R
Sbjct: 498 ELLIQLAQRLREQIGPEDILGRLGGDEFVVLLPHRDAEGAERVATGITEALAAPLRLGSR 557

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++  ++ I IS  P              H   I T++ +AD A+Y+AK++GR+    FS
Sbjct: 558 QMQMSASIGISLYPD-------------HATDIDTLMQQADAAMYMAKQAGRSTHRLFS 603


>gi|89092662|ref|ZP_01165615.1| sensory box protein [Oceanospirillum sp. MED92]
 gi|89083174|gb|EAR62393.1| sensory box protein [Oceanospirillum sp. MED92]
          Length = 393

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 15/174 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           +L I+  R+  ++  D L+GL N           I+S     E  +++F D+D FK +ND
Sbjct: 220 KLAIANQRLEHIACHDTLTGLPNRLFLLNQLEVAIASSKRKKEHTAVLFIDLDNFKPVND 279

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
           ++GH VGD+ +  +S+ +         +GRL G+EF       ++   A ++AN   K+I
Sbjct: 280 DYGHDVGDQCLKQVSEAMAKALRGSDILGRLAGDEFLVILTDIAAASHATVVAN---KLI 336

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNR 254
                  S GP    + +A I    H E        I  AD+A+Y AKK+G+N+
Sbjct: 337 HTLNKTYSVGP-YQFSFTASIGIYIHNEEDISAEECINLADKAMYQAKKAGKNQ 389


>gi|330942172|gb|EGH44823.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 397

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 92/196 (46%), Gaps = 40/196 (20%)

Query: 85  ISGSILKELFISYNRISQLSRI-------DCLSGLLNHSAFISSLGSYNEKLSIVFFDID 137
           + G +L+   + + R   L+R+       + ++ +  H+    +       ++I+  DID
Sbjct: 221 LRGRLLQVQLMEFARTDGLTRLFNRRYQDEVMTSVWEHARNTPA------NVAIILLDID 274

Query: 138 YFKQINDNFGHPVGDKVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           +FK  NDN+GHP GD  +  L     Q     G   F  R GGEE     +G+  Q    
Sbjct: 275 HFKSYNDNYGHPQGDTCLRLLCQKVQQSAHEHGAVAF--RFGGEEVLVLMIGNPVQA--- 329

Query: 195 LANDLRKIIENSQINISS--------GPSIHITISAGIAERCHKEPIST---IIYRADQA 243
                R++ E  Q +++         G +  +T+S G+A  C   P+++   +I  AD A
Sbjct: 330 -----REVAEALQTSVAELKLPHPVLGENALVTVSLGVA--CATAPMTSAENLIGAADNA 382

Query: 244 LYVAKKSGRNRVVCFS 259
           LY AK++GRN  VCF+
Sbjct: 383 LYAAKRAGRN-CVCFA 397


>gi|327188243|gb|EGE55463.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 663

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 12/164 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFF--DIDYFKQINDNFGHPVGDKV 154
           +LS  D L+G+ N  A    L        +E    V F  D+D+FK+ ND +GH  GD+ 
Sbjct: 240 ELSNTDYLTGISNRRALDRRLDECWAAWKDEGRDFVVFLIDVDFFKRFNDRYGHQEGDRC 299

Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  +++ L  VV  +   +GR GGEEF       +   A  LA  +R  +E   I     
Sbjct: 300 LTVVANVLKAVVESSGGMIGRYGGEEFIVVMPAETPSIAMSLAERIRMEVEFLAIAHDER 359

Query: 214 P--SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
           P  S  +T+S G+A       E +  I+  AD ALY AK SGRN
Sbjct: 360 PDDSPIVTVSIGVAFTREDVGEKVERIVREADLALYNAKASGRN 403


>gi|325838541|ref|ZP_08166563.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sp. HGF1]
 gi|325490836|gb|EGC93138.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sp. HGF1]
          Length = 685

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 9/176 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQIN 143
           G + ++ ++   +   L   D  +GLLN   + + +       +  + + FDIDYFK IN
Sbjct: 515 GVLYRQRYMD-KKTEYLKYTDYATGLLNRVGYENEMNKVLKRRQHFAFIIFDIDYFKSIN 573

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH +GDKVI  ++  +         + RLGG+EF    +     +   +   +++ +
Sbjct: 574 DTYGHLIGDKVIEHVAYTIKSCTRKGDIICRLGGDEFVLCLMMDDIAKVCTVLEAIQEEM 633

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +   ++    SI  TI  G  + C  E    + + ADQALY +KK+GRN+   FS
Sbjct: 634 FDYSEDLKVTASIGGTIYEG--QDCGME---MLYHEADQALYKSKKNGRNQFNIFS 684


>gi|291537819|emb|CBL10930.1| diguanylate cyclase (GGDEF) domain [Roseburia intestinalis XB6B4]
          Length = 537

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 78/165 (47%), Gaps = 10/165 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
           R+ + S  D L+ L N       L    EK       L++   DIDYFKQ NDN+GH  G
Sbjct: 360 RLLEKSETDALTRLANRFRLNDYLDQVFEKALSEQTPLAMEILDIDYFKQYNDNYGHQAG 419

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+ I  ++ QL ++    +F  R GG+EF       +E+     A  LR+ I +  I  +
Sbjct: 420 DECIKRIAKQLELMQNDMIFCARYGGDEFIILYQNMTEEAVRHAAEGLRQRIIDLGIQHA 479

Query: 212 SGPSIHI-TISAGIAERCHKEPIST--IIYRADQALYVAKKSGRN 253
              ++ I TIS GI     K+   +   ++ AD  LY  KK  RN
Sbjct: 480 YSKAMPIVTISQGICYDIPKDDTKSWDFLHAADAMLYQVKKKSRN 524


>gi|291537685|emb|CBL10797.1| diguanylate cyclase (GGDEF) domain [Roseburia intestinalis M50/1]
          Length = 537

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 78/165 (47%), Gaps = 10/165 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
           R+ + S  D L+ L N       L    EK       L++   DIDYFKQ NDN+GH  G
Sbjct: 360 RLLEKSETDALTRLANRFRLNDYLDQVFEKALSEQTPLAMEILDIDYFKQYNDNYGHQAG 419

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+ I  ++ QL ++    +F  R GG+EF       +E+     A  LR+ I +  I  +
Sbjct: 420 DECIKRIAKQLELMQNDMIFCARYGGDEFIILYQNMTEEAVRHAAEGLRQRIIDLGIQHA 479

Query: 212 SGPSIHI-TISAGIAERCHKEPIST--IIYRADQALYVAKKSGRN 253
              ++ I TIS GI     K+   +   ++ AD  LY  KK  RN
Sbjct: 480 YSKAMPIVTISQGICYDIPKDDTKSWDFLHAADAMLYQVKKKSRN 524


>gi|254508246|ref|ZP_05120370.1| ggdef domain protein [Vibrio parahaemolyticus 16]
 gi|219548863|gb|EED25864.1| ggdef domain protein [Vibrio parahaemolyticus 16]
          Length = 683

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 97/190 (51%), Gaps = 15/190 (7%)

Query: 82  LGYISG---SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSI 131
           LG+++    S+ K+   +  +++QL+  D L+GL N S  +  LG         +E  ++
Sbjct: 217 LGHLAKTFHSLWKDREAAEVKLNQLAYYDSLTGLANRSLLLQLLGKAIDDSNVRSETGAL 276

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
            + D+D FK IND+ GH +GD ++  +S ++           R+GG+EFA     ++ ++
Sbjct: 277 FYLDLDRFKTINDSLGHTIGDHLLKAISMRIEAWLKDDYTAARIGGDEFAILLPNTNAEK 336

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKK 249
           A  LA  L  +I N   +I     ++ ++S GIA         I  ++ +AD ALY AK 
Sbjct: 337 AHELAQQLLALISNP-YSIDDH-QLYCSMSVGIALFPSVGNTNID-VLRQADTALYRAKV 393

Query: 250 SGRNRVVCFS 259
           SGRN+   + 
Sbjct: 394 SGRNKYTFYE 403


>gi|209884076|ref|YP_002287933.1| diguanylate cyclase [Oligotropha carboxidovorans OM5]
 gi|209872272|gb|ACI92068.1| diguanylate cyclase [Oligotropha carboxidovorans OM5]
          Length = 493

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            R++QL+  D L+G+ N   F   +      G     LS++  D D+FK  ND FGH  G
Sbjct: 320 QRLAQLATTDALTGIDNRRRFDERMLDEWRRGWQKLPLSLLMIDADHFKTFNDLFGHQEG 379

Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D+V+  ++  +      P     R GGEEFA     +   +A  +A ++R  +E      
Sbjct: 380 DQVLVRIAKSIAQSSRRPADCAARYGGEEFALLLPDTELDDAMRIAEEIRTRVER----- 434

Query: 211 SSGPSIHITISAGIAERCHKEPIS----TIIYRADQALYVAKKSGRNRVV 256
            S      T+S G+A  C    ++     +I  AD+ALY AK+ GRNR V
Sbjct: 435 LSTEKWATTVSIGVA--CVVPDMAGSSRNLIEAADKALYQAKEQGRNRCV 482


>gi|163815429|ref|ZP_02206802.1| hypothetical protein COPEUT_01592 [Coprococcus eutactus ATCC 27759]
 gi|158449066|gb|EDP26061.1| hypothetical protein COPEUT_01592 [Coprococcus eutactus ATCC 27759]
          Length = 769

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLS--IVFFDIDYFKQI 142
           L E+      ++ LS  D L+G+ N   F+  +  Y     N  L   ++F D+D  K +
Sbjct: 595 LNEIHEKNELLNHLSTSDELTGIYNRRGFMERVEYYINIPSNHGLKAILLFADMDSLKVV 654

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH  GD  +  +++ L + FG    +GR+GG+EF   A        A + N +++ 
Sbjct: 655 NDKFGHKDGDFALKNIANILSMSFGPHDVIGRIGGDEFVCFAFTGDPDYVAQVQNRIKQY 714

Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
             ++++N + G    I +S G+ E  C  E  I  ++ +AD ALY  K+  R  ++
Sbjct: 715 --SAELNATCGKPYFIEMSVGVTEFTCDGEQTIEDLLSQADSALYTNKRYKRMSII 768


>gi|34557237|ref|NP_907052.1| components of sensory transduction system [Wolinella succinogenes
           DSM 1740]
 gi|34482953|emb|CAE09952.1| COMPONENTS OF SENSORY TRANSDUCTION SYSTEM [Wolinella succinogenes]
          Length = 407

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 99/199 (49%), Gaps = 14/199 (7%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS----AFISSLGSYNEK-- 128
           SIT+S  L +  G  LK+   + + + +L+  D L+G+ N       F   LG  + +  
Sbjct: 211 SITLSHRLLHKQGQELKK---ANDALKELAIKDGLTGVYNRRFFDLIFERELGRASRERR 267

Query: 129 -LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALG 186
             + +  DID+FK  ND +GH  GD+V+  ++  L   +  +  +  RLGGEEF A  +G
Sbjct: 268 AFTFIMIDIDHFKLYNDTYGHGEGDQVLKRVAKALDNTLERSSDYFFRLGGEEFCAFVMG 327

Query: 187 SSEQEAAILANDLRKIIENSQI---NISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
            +E+++  L   + + +E  +I     S+ P + I++ A       +     II +AD A
Sbjct: 328 LNEEQSLALCKKMLQAVERLKIPHKKNSASPYVTISMGAICLVPTPQSEAKKIIEKADGA 387

Query: 244 LYVAKKSGRNRVVCFSDIE 262
           LY AK  GRN+    S  E
Sbjct: 388 LYNAKGWGRNQAAILSHHE 406


>gi|330886287|gb|EGH20188.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 712

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 18/187 (9%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           ++++  +  S++++L   Y ++ + +  D L+GLLN      ++          ++ L +
Sbjct: 254 AMVMTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVEGMLLRKEQTDKYLVV 310

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF      L   E
Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247
           Q A I    + ++    Q++   G  I +  S GIA    C    +  ++  AD A+Y A
Sbjct: 371 QAAKIAEKLIERVSGRRQVD---GVDITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 426

Query: 248 KKSGRNR 254
           K++GR +
Sbjct: 427 KRAGRQQ 433


>gi|323529581|ref|YP_004231733.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Burkholderia sp. CCGE1001]
 gi|323386583|gb|ADX58673.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Burkholderia sp. CCGE1001]
          Length = 692

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 13/166 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            +I +L+ +D L+GL N +         I +        +I+F D+D FK IND+ GH  
Sbjct: 253 GQIVRLATLDTLTGLPNRATLTERIERAIHAARRQRSLFAILFMDLDGFKTINDSLGHSA 312

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILANDLRKIIENSQI 208
           GD+V+A  + +L++       V RLGG+EF   +  L S    AA+    L ++  ++  
Sbjct: 313 GDQVLAAFAQRLLICVRAGDTVARLGGDEFVVLSENLASRMDAAALAEGVLERMRRDTWA 372

Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           +  S P + +  S GIA      + + T++  AD A+Y AK++GR+
Sbjct: 373 D--SQP-LQVMPSIGIALFPEDGDSVDTLLKHADAAMYEAKRAGRS 415


>gi|260768107|ref|ZP_05877041.1| GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260616137|gb|EEX41322.1| GGDEF family protein [Vibrio furnissii CIP 102972]
          Length = 486

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 9/159 (5%)

Query: 103 LSRIDCLSGLLNHSAFIS--SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           L+  D ++GLLN         +  ++  LS+   DID FK IND +GH VGD VI ++ D
Sbjct: 331 LASRDPMTGLLNRRGMEEFLQVKQHSRYLSVAVLDIDNFKSINDTYGHDVGDDVICYVGD 390

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHIT 219
           Q+         V R GGEEF          Q  A++      I  +S   + +G     T
Sbjct: 391 QIECNIRETDAVARFGGEEFVVYLTSPDPLQIEAVMQRVKEAITRDSTRVVPNG----FT 446

Query: 220 ISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           IS GI   E   +         AD+ LY+AK +G++++V
Sbjct: 447 ISGGIQVIESHQEWDFDKQFKLADEKLYLAKTTGKDKLV 485


>gi|257482481|ref|ZP_05636522.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|320321946|gb|EFW78042.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330948|gb|EFW86922.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330872180|gb|EGH06329.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330984626|gb|EGH82729.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 712

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 18/187 (9%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           ++++  +  S++++L   Y ++ + +  D L+GLLN      ++          ++ L +
Sbjct: 254 AMVMTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVEGMLLRKEQTDKYLVV 310

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF      L   E
Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247
           Q A I    + ++    Q++   G  I +  S GIA    C    +  ++  AD A+Y A
Sbjct: 371 QAAKIAEKLIERVSGRRQVD---GVDITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 426

Query: 248 KKSGRNR 254
           K++GR +
Sbjct: 427 KRAGRQQ 433


>gi|187780166|ref|ZP_02996639.1| hypothetical protein CLOSPO_03762 [Clostridium sporogenes ATCC
           15579]
 gi|187773791|gb|EDU37593.1| hypothetical protein CLOSPO_03762 [Clostridium sporogenes ATCC
           15579]
          Length = 419

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 87/171 (50%), Gaps = 21/171 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPV 150
           ++  Q++  D L+ L N ++F+  L      S  ++  L+I+F D+D FK++NDNFGH  
Sbjct: 250 DKTKQMAYFDSLTELPNRNSFLKQLEHEIKLSRKKQTILAIMFLDLDKFKEVNDNFGHCT 309

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKI------I 203
           GDK++  ++ ++     +   + R GG+EF       + E++   LA D+ ++      I
Sbjct: 310 GDKLLWQVAKRVKNTISSKDLIARFGGDEFTILIRDIAYEKQVEDLARDIIEVFREPIYI 369

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           E   +NI +   I      G       +    +I +AD+A+Y AKK G N+
Sbjct: 370 EGIYVNIKTSIGISFFPKDG-------DTSQELIKKADKAMYDAKKRGSNK 413


>gi|258623478|ref|ZP_05718481.1| GGDEF family protein [Vibrio mimicus VM573]
 gi|258584293|gb|EEW09039.1| GGDEF family protein [Vibrio mimicus VM573]
          Length = 412

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 23/170 (13%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+ +    A    L    +K ++   D+D+FK+ ND +GH  GD V+  ++ +L ++ 
Sbjct: 241 DPLTQIPGRQALDQDLKHIGKKFTLAMLDVDHFKKFNDTYGHDTGDDVLKLVASRLRLIE 300

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPS-------- 215
           G    V R GGEEF+         E     + LR+ IE+ ++   N S  P         
Sbjct: 301 GKAR-VYRYGGEEFSIIYRNKLADEVLPFIDALRQDIESYELVIRNSSKRPKSDAEGAKK 359

Query: 216 ---------IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
                    + ITIS G+ + + H+ P +  +  AD ALY AK++GRN V
Sbjct: 360 RTRKSNSDIVTITISIGVCDSQLHRNP-NEALKAADSALYKAKQAGRNCV 408


>gi|228924095|ref|ZP_04087371.1| Sensory box protein [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228835585|gb|EEM80950.1| Sensory box protein [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 864

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +     +++F D+D FK+IND 
Sbjct: 425 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDAAVIFLDLDRFKKINDR 484

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD ++  ++ +L     +   V R GG+EF         +++AI   +    I N
Sbjct: 485 LGHDVGDLLLIEVAKRLRSCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 544

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I  G  + IT S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 545 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 598


>gi|255305919|ref|ZP_05350091.1| putative signaling protein [Clostridium difficile ATCC 43255]
          Length = 1181

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++ + +  D L+ L N  A  S +  Y       K +++  DID FK INDN GH  GD 
Sbjct: 704 KLKERAEKDPLTDLYNKKASQSLIEEYITLDKKRKGALMIIDIDDFKGINDNLGHLYGDA 763

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISS 212
           V++ +++ L+ +F     VGR+GG+EF       SE    I  A +L KI E S   +  
Sbjct: 764 VLSEIANDLINLFRATDIVGRIGGDEFIVFIKDISETRDIINKAEELVKIFERSF--LGK 821

Query: 213 GPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259
           G +  I++S GIA+          ++R AD ALY AK  G+N   C++
Sbjct: 822 GRNYKISLSVGIAKFPQDGMDYMTLFRNADIALYSAKGKGKN---CYT 866


>gi|153835031|ref|ZP_01987698.1| ggdef family protein [Vibrio harveyi HY01]
 gi|148868508|gb|EDL67607.1| ggdef family protein [Vibrio harveyi HY01]
          Length = 328

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 86/169 (50%), Gaps = 21/169 (12%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIA 156
           LS  D ++G LN     + L    E        +I   DID+FKQ+ND +GH VGD+VI 
Sbjct: 148 LSTRDSMTGALNRGQLEAFLQRALEDKRLGKASTIAVIDIDHFKQVNDLYGHDVGDEVI- 206

Query: 157 FLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
              +Q V +          + RLGG+EF     G SEQ A  + +++   + +       
Sbjct: 207 ---NQTVAILNDYSREYDLLFRLGGDEFLLLFEGLSEQTAQFMMSNICDKVRSKHF---- 259

Query: 213 GPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRVVCFS 259
               H+++S G+AE C  E  +  ++  RAD ALY AK++GR++VV  S
Sbjct: 260 ARYAHVSLSVGVAE-CLLEDDTPDLWLKRADIALYDAKQNGRDQVVVAS 307


>gi|120608925|ref|YP_968603.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
 gi|120587389|gb|ABM30829.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
          Length = 495

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 99/205 (48%), Gaps = 18/205 (8%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           ++PF  LE       +L   S+ +S ++  ++  ++    ++   +  +++ D L+GL N
Sbjct: 278 MSPFLKLE-------ALFAFSVLMSAVISIVAVKVVASRVVTP--LEDVAQKDALTGLAN 328

Query: 115 HSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
              F + L    + L       +++  D+D FK +ND +GH  GD V+   + ++  +  
Sbjct: 329 RRTFDARLLRAEQDLQRSGTGFAVMLMDLDKFKSVNDTYGHDAGDVVLKEAAARIQKIIR 388

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-E 226
           +   + RLGG+EFA        Q  + +A  + +++    I +  G +  +  S GIA  
Sbjct: 389 SSDTLARLGGDEFAILVRTDDPQTLSHIATAIVEVVRQP-IPLQPGLAAEVGTSIGIAFA 447

Query: 227 RCHKEPISTIIYRADQALYVAKKSG 251
             H    + +++ ADQA+Y AK+ G
Sbjct: 448 PAHSRRGAEVVHWADQAMYTAKRRG 472


>gi|87120083|ref|ZP_01075979.1| sensory box/GGDEF/EAL domain protein [Marinomonas sp. MED121]
 gi|86164785|gb|EAQ66054.1| sensory box/GGDEF/EAL domain protein [Marinomonas sp. MED121]
          Length = 762

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 11/184 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           SI+ +   +  RI +L+  D L+GL + +         I S    NE  ++++ D+D FK
Sbjct: 318 SIIMDREQNLKRIKELAYTDELTGLSSRAQLYLSLEKRIKSAKESNEHFTLIYLDLDNFK 377

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND+ GH  GD ++  ++ +L+ +      + RLGG+EF    L + EQ  A +     
Sbjct: 378 NINDSLGHDAGDTLLQMIATRLINITSHTHTIARLGGDEF-CIILDTQEQAKAGIIKFAH 436

Query: 201 KIIEN-SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E  SQ    S      T S GIA+     E + +++  AD ALY AK  G+N V  F
Sbjct: 437 ACLEGISQPVFLSSRRFIPTCSLGIAKYPTDGEDLPSLLKAADTALYAAKDRGKN-VYAF 495

Query: 259 SDIE 262
             +E
Sbjct: 496 YQVE 499


>gi|332532108|ref|ZP_08407991.1| GGDEF/EAL domain protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038449|gb|EGI74893.1| GGDEF/EAL domain protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 467

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            I +LS  D L+ LLN +AF+ +          E  +++F D+D FKQIND+ GH VGDK
Sbjct: 39  EIYRLSNTDPLTNLLNRTAFLKNANRQLADNPQEPFALLFVDLDGFKQINDSLGHKVGDK 98

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  ++ ++  V    +F  R GG+EF   A    + E    A+ + + I          
Sbjct: 99  VLKEIARRISNVCNQQLFKCRWGGDEFLILATYQKQAELIEFADRVLQSIGAEHETYKYQ 158

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  TI   +    H    +T+I  AD A+Y  K+  +  +  ++D
Sbjct: 159 KWVSATIGIAMYPE-HGSDFNTLIRSADTAMYHQKRMAKGNINIYND 204


>gi|291288785|ref|YP_003505601.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885945|gb|ADD69645.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 1019

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 12/163 (7%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N   F   L     K      + I+F D+D FK +ND  GH  GDKV+  +++
Sbjct: 597 DSLTGLPNRIYFTDKLAEQIPKNHLPSCIGIMFLDLDRFKNLNDTLGHTTGDKVLEIIAE 656

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LANDLRKIIENSQINISSGPSIHI 218
           ++      P    R  G+EF     G   Q+A I  + N  ++I E   I    G  + I
Sbjct: 657 RIRNTVHGPDMAARFSGDEFTVFFTGVKNQDALIEMVKNVTKRISEPLHI---QGYELFI 713

Query: 219 TISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
             SAGI+         S +I  A+ A+Y AK++G+N +  ++D
Sbjct: 714 QTSAGISVYPDNGLTASELIKNAEIAMYQAKQTGKNNIQLYTD 756


>gi|283833287|ref|ZP_06353028.1| sensory box/GGDEF family protein [Citrobacter youngae ATCC 29220]
 gi|291070924|gb|EFE09033.1| sensory box/GGDEF family protein [Citrobacter youngae ATCC 29220]
          Length = 642

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 81/160 (50%), Gaps = 11/160 (6%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ + N   F  +L          N+ ++++ FD+D FK++ND +GH  GD ++  +S
Sbjct: 228 DSLTDMNNRQFFWGNLNQKIEIAEKNNDSVTVMLFDLDRFKEVNDTYGHDAGDILLRQIS 287

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           D+L  +  T   + RLGG+EFA  + G +E +A  LA  +   I  SQ        I+IT
Sbjct: 288 DRLTAMSLTSDTLYRLGGDEFAFLSSGLTESQAVSLAQKICDFI--SQPYTIYNTVINIT 345

Query: 220 ISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCF 258
              GI      E  S  +Y+ AD ALY AK  G  ++  F
Sbjct: 346 TCVGIV-ISETERRSDYLYKFADLALYEAKNEGSGKIKVF 384


>gi|262372608|ref|ZP_06065887.1| GGDEF domain-containing protein [Acinetobacter junii SH205]
 gi|262312633|gb|EEY93718.1| GGDEF domain-containing protein [Acinetobacter junii SH205]
          Length = 409

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 11/174 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           EL     ++S LS+ D L+GL N       L +  ++       L+I+  DID+FK  ND
Sbjct: 222 ELMRQAQQLSILSQQDALTGLANRRYLDEVLENEWKRATRHEMPLTIMMIDIDFFKLYND 281

Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GH  GD+ +  ++  L  +   +     R GGEEF      +   +A I    L ++I
Sbjct: 282 TLGHIQGDQCLRRIAIMLGSIASRSGDLAARYGGEEFLLLFSMTDRDQAIIQVQRLMELI 341

Query: 204 ENSQI-NISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            N  I +  S  S H+TIS G+A       + +S  + +AD ALY+AK +GRN+
Sbjct: 342 RNIGIVHPRSNISKHVTISVGVATITPTLNDSLSEFVSQADHALYIAKSNGRNQ 395


>gi|260770499|ref|ZP_05879432.1| periplasmic/7TM domain sensor diguanylate cyclase [Vibrio furnissii
           CIP 102972]
 gi|260615837|gb|EEX41023.1| periplasmic/7TM domain sensor diguanylate cyclase [Vibrio furnissii
           CIP 102972]
          Length = 612

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 14/168 (8%)

Query: 106 IDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+G+LN            S   S ++   +V  D+D FK +ND +GH  GD ++  L
Sbjct: 439 VDSLTGILNRRGLNRYFETLKSRASSADDTAIVVLIDLDEFKPVNDQYGHEAGDMLLQTL 498

Query: 159 SDQLVVVFGTPMFVGRLGGEEFA---AAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
           + ++         +GRLGG+EF    A   G S+ E   +   L   I +  I + S   
Sbjct: 499 AQRMRSRLPEHAGLGRLGGDEFVALFAGQTGRSKHELEQIGVQLLAAI-SEPIALHSDVV 557

Query: 216 IHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSDI 261
           +H+  S G++  C   P S  T +  AD A+Y  K +G+N VV  SD+
Sbjct: 558 VHVQASIGVS-LCTIAPHSFATALRAADTAMYDIKHNGKNGVVVVSDV 604


>gi|260683961|ref|YP_003215246.1| putative signaling protein [Clostridium difficile CD196]
 gi|260210124|emb|CBA64267.1| putative signaling protein [Clostridium difficile CD196]
          Length = 602

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 10/131 (7%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+DYFK+ ND +GH  GD  +  ++  +       MF+ R GGEEF   ++    +++ I
Sbjct: 479 DVDYFKEYNDTYGHYNGDIALKNITIIIKKYLKKDMFMIRYGGEEFLILSVCKDYKKSKI 538

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGR 252
               L +I++    N       ++T+S GI + C    I    II  AD+ALY AK+SGR
Sbjct: 539 FGRKLCRIVKKFLNN-------NLTVSIGI-DTCKNSSIDIREIIENADKALYKAKESGR 590

Query: 253 NRVVCFSDIEN 263
           NR + + D +N
Sbjct: 591 NRCLHYHDFKN 601


>gi|261855741|ref|YP_003263024.1| diguanylate cyclase with PAS/PAC sensor [Halothiobacillus
           neapolitanus c2]
 gi|261836210|gb|ACX95977.1| diguanylate cyclase with PAS/PAC sensor [Halothiobacillus
           neapolitanus c2]
          Length = 432

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 25/167 (14%)

Query: 107 DCLSGLLNHSAFISSL-GSYNE----------KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           D L+GL N    +  L  ++N+          +LS++  D+D+FK+IND +GH  GD+V+
Sbjct: 269 DSLTGLFNRRRGMELLIETFNKTVKRQPNAKVELSLLVIDLDFFKRINDRYGHLEGDEVL 328

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
                 ++          R GGEEF  A  G++  EA   A ++R+   N +      P 
Sbjct: 329 RITGSLILKSLPDDAVAFRWGGEEFLVALPGTALAEARERAENIRQAFVNQEWQ----PG 384

Query: 216 IH---ITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           I    +T+S GIA    E  H   +  +I  AD+A+Y+AK+ GRNRV
Sbjct: 385 IEGECVTVSIGIAHYPEEATH---LLELIAAADKAVYLAKRLGRNRV 428


>gi|13488377|ref|NP_109384.1| regulatory components of sensory transduction system [Mesorhizobium
           loti MAFF303099]
 gi|14028131|dbj|BAB54723.1| regulatory components of sensory transduction system [Mesorhizobium
           loti MAFF303099]
          Length = 354

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 14/177 (7%)

Query: 91  KELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           +   IS N  + +L+RID L+GL N   F   L +  ++       LS++  D D FK+ 
Sbjct: 175 QRQLISANLELERLTRIDGLTGLGNRRYFDEYLAAEWKRAFRAQSPLSLLMIDADNFKRY 234

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD+V+  ++  +    G       R GGEEF    + +  +E++ +A  L +
Sbjct: 235 NDTYGHMAGDEVLKQIARVIHSGSGRSTDLAARYGGEEFVIVLVDTLLEESSAIAEQLVQ 294

Query: 202 IIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +   ++NI  GP   +TIS G+A       E  +  +  AD AL+ AK  GRNRV 
Sbjct: 295 GVR--ELNIPHGPD-RVTISVGVATTVPNENETPNDFVNAADLALFRAKSEGRNRVA 348


>gi|27366009|ref|NP_761537.1| GGDEF domain-containing protein [Vibrio vulnificus CMCP6]
 gi|37679726|ref|NP_934335.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|320156523|ref|YP_004188902.1| GGDEF domain-containing protein [Vibrio vulnificus MO6-24/O]
 gi|27362209|gb|AAO11064.1| GGDEF domain protein [Vibrio vulnificus CMCP6]
 gi|37198471|dbj|BAC94306.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|319931835|gb|ADV86699.1| GGDEF domain [Vibrio vulnificus MO6-24/O]
          Length = 644

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 11/172 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFI------SSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           F++  +  + S++D ++G LN  + I      SS    + K  ++ FD+D FK +ND FG
Sbjct: 468 FLTSQQKRKQSQLDMMTGALNRGSAIKAIKQASSAKRPHSKNVLILFDLDNFKWVNDQFG 527

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           HP GDK++  +   L+        +GRLGGEEF        + +       L  +I  S+
Sbjct: 528 HPTGDKLLITICKTLLGELQRGDILGRLGGEEFILLLREVEDIDVQFRVEKLHDLI--SE 585

Query: 208 INISSGPSIHITISAGIAERCHKEPISTI--IYR-ADQALYVAKKSGRNRVV 256
             ++S  +  ++ SA  +       +S    +Y   DQALY AKK+GRN ++
Sbjct: 586 CRVASPSNTAVSASASFSFLATPRALSDFDELYSILDQALYQAKKNGRNTII 637


>gi|154246429|ref|YP_001417387.1| diguanylate cyclase [Xanthobacter autotrophicus Py2]
 gi|154160514|gb|ABS67730.1| diguanylate cyclase [Xanthobacter autotrophicus Py2]
          Length = 429

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 29/206 (14%)

Query: 73  IISITISLLLGYISGSILKELFI-------SYNRISQLSRIDCLSGLLNHSAFISSL--- 122
           +I+   +  +GY + S + EL         +   +S ++  D L+GL N   F  ++   
Sbjct: 225 VIARRTASGIGYFTHSDITELKRQQAALERALAELSAIAATDVLTGLANRRGFEKAISAA 284

Query: 123 ----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGG 177
               G     ++++  D+D+FK IND FGH  GD+ +  ++D +   V        R GG
Sbjct: 285 WHACGVAGTPVAVIIIDLDHFKAINDRFGHAAGDECLRRIADAVRSSVTRADDLAARHGG 344

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-----ITISAGI---AERCH 229
           EEFA     ++ +EA  +   +R+      + +     +H     +T+S GI      C 
Sbjct: 345 EEFAILLPNATAEEALAIGQGIRR-----SVRVEPWAQVHPDLNRLTVSMGICAVKSACE 399

Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255
            + I   +  AD+ALY AKK GR+R+
Sbjct: 400 VD-IDLAMRHADEALYRAKKRGRDRI 424


>gi|95931073|ref|ZP_01313800.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95132882|gb|EAT14554.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 353

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 100/203 (49%), Gaps = 26/203 (12%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           GL  +L+E L+L      +++ L  ++         ++ ++  L+ +D L+GLLN     
Sbjct: 152 GLNTVLLERLAL-----KVAICLSNVT---------AHEKLRSLACLDPLTGLLNRRVLG 197

Query: 120 SSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
            +L         Y   LS+VF D++ FKQ+NDN GH  GD ++ +L+D L     T   V
Sbjct: 198 QALQREFDRACRYETALSVVFIDLNDFKQVNDNHGHDAGDLLLQYLADCLQRYSRTTDLV 257

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKE 231
            R  G+EF      +  + A +L   L K  E S+  +  G + + +++S G+A     +
Sbjct: 258 ARYAGDEFVLVLPQTDGENAGLLMERLDK--ELSRQGMLYGDALVAVSLSYGVASLPDGD 315

Query: 232 PIS--TIIYRADQALYVAKKSGR 252
             S   ++ +ADQALY  K+  +
Sbjct: 316 VSSPEQMLKKADQALYRHKRRSK 338


>gi|330812186|ref|YP_004356648.1| GGDEF domain membrane protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380294|gb|AEA71644.1| putative GGDEF domain membrane protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 429

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 116/263 (44%), Gaps = 38/263 (14%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY--------GLEYILVENLSLV-IISI 76
            +M    + + +F A  + +A  + ++    P +        GL ++L +   L   ++I
Sbjct: 164 AWMSLIQLSYPMFAAAFLLLA--WQYWRNPRPLHAAQLVGVLGLFWMLPKTFILPFTLNI 221

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDI 136
             S ++  I+ ++  E +       Q++  D L+GL    A    +        +   D+
Sbjct: 222 MCSQVMLMIAAAVAHEAY-------QMAFRDELTGLPGRRALNERMQRLGRNYVLAMSDV 274

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+ ND  GH VGD+V+  ++ +L  + G      R GGEEFA    G +  E     
Sbjct: 275 DHFKKFNDTHGHDVGDQVLRLVASKLSKIGGG-GRAYRYGGEEFALVFAGKTIDECMPHL 333

Query: 197 NDLRKIIENSQI---NISSGP----------------SIHITISAGIAERCHKEPISTII 237
             +R+ IE   I   N  S P                S+ +T+S G+AER  +     ++
Sbjct: 334 EVIRQSIETYAIQLRNPDSRPQDDQQGRQRRSGAGASSVSVTVSIGVAERLEQRTPEEVL 393

Query: 238 YRADQALYVAKKSGRNRVVCFSD 260
             ADQALY AK +GRN V+ F  
Sbjct: 394 KSADQALYNAKGAGRNCVIAFGQ 416


>gi|317052164|ref|YP_004113280.1| diguanylate cyclase [Desulfurispirillum indicum S5]
 gi|316947248|gb|ADU66724.1| diguanylate cyclase [Desulfurispirillum indicum S5]
          Length = 533

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N   F   L     +       ++++ FDID+FK++ND +GH  GD V+  ++
Sbjct: 366 DPLTGISNRLQFTRVLDDEAARKRRNSTPMALIMFDIDHFKRVNDTWGHNTGDAVLKEIA 425

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +           R GGEEF      +  + A I+A  LR+ IE     I      ++T
Sbjct: 426 RIVSAGIRASDVFARWGGEEFVLLLRDNDCKAARIVAEKLRQQIEWHPFPIIG----NLT 481

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            S G+      +  +  + RAD+ALY +K +GRN+V C
Sbjct: 482 CSFGVTAWQPDDDEAGFLARADKALYASKAAGRNQVSC 519


>gi|237799947|ref|ZP_04588408.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331022802|gb|EGI02859.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 747

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 6/136 (4%)

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           E+ +++F D+D FK +ND+ GH  GD+++  ++++L     +   + R+GG+EFA   +G
Sbjct: 346 ERATVLFLDLDGFKVVNDSMGHLAGDQLLKRVANRLQNCVRSNDVLARIGGDEFAILLMG 405

Query: 187 SSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERC--HKEPISTIIYRADQA 243
             + E A+   +  +I+      I   G  I I+ S GI   C  H +P   ++  AD A
Sbjct: 406 KDQPETAVRMAE--RIVSQLHAAIQIEGQDIFISCSIGIVTACDSHSKP-EDLLRDADVA 462

Query: 244 LYVAKKSGRNRVVCFS 259
           +Y AKK GR R   F+
Sbjct: 463 MYSAKKQGRGRWSIFN 478


>gi|18309786|ref|NP_561720.1| sensory box protein/histidinol phosphate phosphatase family protein
           [Clostridium perfringens str. 13]
 gi|18144464|dbj|BAB80510.1| hypothetical protein [Clostridium perfringens str. 13]
          Length = 624

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 20/170 (11%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           KE+ I  +R++     D L+ + N   F  S           ++K +++F D+D+FK+IN
Sbjct: 182 KEMEIELDRMANY---DELTNIPNMRLFFKSFRNTINESKKMDKKFAVLFIDLDWFKEIN 238

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILAND 198
           DN+GH VGD+V+     ++         +GR+GG+EFAA     S++E        + N 
Sbjct: 239 DNYGHNVGDEVLVCAVKRIYKCLRKGDILGRIGGDEFAAILKDISDREEIEKIVKDIQNS 298

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           LRK I+   +  +   SI ITI     E+     I  ++  +D+A+Y  K
Sbjct: 299 LRKRIKIGDVTCNIDSSIGITIFPEDGEK-----IEVLMRNSDKAMYKVK 343


>gi|27375475|ref|NP_767004.1| hypothetical protein blr0364 [Bradyrhizobium japonicum USDA 110]
 gi|27348612|dbj|BAC45629.1| blr0364 [Bradyrhizobium japonicum USDA 110]
          Length = 887

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           RI+ ++  D L+ L N       L       +  +  +I++ D+D FK +ND+ GH VGD
Sbjct: 458 RIAHMAHYDALTDLPNRVLMRGHLERRVAELAEGKPFAILYIDVDEFKGVNDSLGHEVGD 517

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAILANDLRKIIENSQ 207
           +++  ++++L         V RLGG+EFA    G+ +Q      A  + N LR  +    
Sbjct: 518 ELLRQVANRLRACVSGNDLVARLGGDEFAIVKAGTRDQAELTALAETILNALRAPVNCKG 577

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             + +  SI I I+       H + +  ++ RAD A+Y AK  GR     F
Sbjct: 578 QEVPTDASIGIAIAPD-----HGDNLDDLLKRADLAMYAAKSEGRRTFRVF 623


>gi|332298949|ref|YP_004440871.1| diguanylate cyclase [Treponema brennaborense DSM 12168]
 gi|332182052|gb|AEE17740.1| diguanylate cyclase [Treponema brennaborense DSM 12168]
          Length = 375

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 76/138 (55%), Gaps = 8/138 (5%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           ++++ FDID+FK+ ND +GH  GD V+  ++  +           R GGEEF      + 
Sbjct: 224 VAVIMFDIDFFKRFNDTYGHACGDFVLQRVARIIQDGVRGQDLAARYGGEEFVVMLYNTD 283

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQ 242
              A  + + +R++IE S + +     +++TISAG +      E+      + ++  ADQ
Sbjct: 284 SNGAYKVGDRIRRVIEESDL-VYEDVHMNVTISAGFSVYDPGDEKNAAVTPTQLVELADQ 342

Query: 243 ALYVAKKSGRNRVVCFSD 260
           ALY++K++GRNR + F+D
Sbjct: 343 ALYLSKRNGRNR-ITFAD 359


>gi|303325870|ref|ZP_07356313.1| putative sensory box/GGDEF family protein [Desulfovibrio sp.
           3_1_syn3]
 gi|302863786|gb|EFL86717.1| putative sensory box/GGDEF family protein [Desulfovibrio sp.
           3_1_syn3]
          Length = 976

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 85/172 (49%), Gaps = 28/172 (16%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + + S+ D L+ L N  AF   +           ++ +++F D+D FK +ND  GH VGD
Sbjct: 803 LERRSQRDSLTDLYNKQAFQEKVRRCLPVSKESGKESALLFVDLDNFKTLNDTLGHMVGD 862

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-- 210
           K +A +   L  VF     VGR GG+EF     G       I  N LRK +E+ +  +  
Sbjct: 863 KALAAVGKILSSVFHNADAVGRFGGDEFCVFVRG-------IPRNVLRKRVESLRTALRL 915

Query: 211 ---SSGPSIHITISAGI-----AERCHKEPISTIIYRADQALYVAKKSGRNR 254
               +G  + ++ S G+      E  ++E +     RADQALY AK+SG++R
Sbjct: 916 HFEENGQHVDLSSSIGVYLFDGNESSYEEALQ----RADQALYRAKQSGKDR 963


>gi|240145089|ref|ZP_04743690.1| response regulator [Roseburia intestinalis L1-82]
 gi|257202761|gb|EEV01046.1| response regulator [Roseburia intestinalis L1-82]
          Length = 537

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 78/165 (47%), Gaps = 10/165 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
           R+ + S  D L+ L N       L    EK       L++   DIDYFKQ NDN+GH  G
Sbjct: 360 RLLEKSETDALTRLANRFRLNDYLDQVFEKALSEQTPLAMEILDIDYFKQYNDNYGHQAG 419

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+ I  ++ QL ++    +F  R GG+EF       +E+     A  LR+ I +  I  +
Sbjct: 420 DECIKRIAKQLELMQNDMIFCARYGGDEFIILYQNMTEEAVRHAAEGLRQRIIDLGIQHA 479

Query: 212 SGPSIHI-TISAGIAERCHKEPIST--IIYRADQALYVAKKSGRN 253
              ++ I TIS GI     K+   +   ++ AD  LY  KK  RN
Sbjct: 480 YSKAMPIVTISQGICYDIPKDDTKSWDFLHAADAMLYQVKKKSRN 524


>gi|205374496|ref|ZP_03227292.1| hypothetical protein Bcoam_15506 [Bacillus coahuilensis m4-4]
          Length = 618

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 26/187 (13%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLL--NH-SAFISSLGSYNEKLSIVFFDIDYFKQ 141
           ++ S+L+E      ++ ++   D L+ L   NH   FIS     +EK  +V  DID FK+
Sbjct: 446 LTNSMLRE------KLEEMVITDHLTKLYSRNHLDEFISRSMLEDEKGCLVLVDIDNFKR 499

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE----FAAAALGSSEQEAAILAN 197
           +ND +GH VGD+VI  +++ +           R GGEE    F   ++G +E     + N
Sbjct: 500 VNDTYGHQVGDEVIVQVANLMSSTSKGKGLAARWGGEELAIYFPHLSIGEAEPYVESIIN 559

Query: 198 DLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           D           +++ P   +T+SAG++  ++       ++ ++AD ALY AK++G+N+ 
Sbjct: 560 D---------CPLATNPK--VTLSAGVSSWKKGFMYTEDSLFHKADTALYEAKRTGKNKY 608

Query: 256 VCFSDIE 262
           V  S +E
Sbjct: 609 VKDSSLE 615


>gi|134094323|ref|YP_001099398.1| putative sensory protein [Herminiimonas arsenicoxydans]
 gi|133738226|emb|CAL61271.1| conserved hypothetical protein; putative PAS/PAC, EAL, GGDEF
           domains [Herminiimonas arsenicoxydans]
          Length = 710

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 11/169 (6%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N +     +         Y    +I F D+D FK IND+ GH VGD+++   +
Sbjct: 290 DALTGLPNRTLLYDRMQQAVLHSARYGNLTAIAFLDLDQFKFINDSLGHQVGDELLKITA 349

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +L         V R GG+EF    L S   E +I     R + E +Q  +++G    IT
Sbjct: 350 QRLTSCLRESDTVARQGGDEF-VLLLTSQPSEESITHTMQRVLHEVAQPWMANGLEFRIT 408

Query: 220 ISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G+   C  +     T++  AD A+Y AK+ GRN    F+   N+T 
Sbjct: 409 CSVGVT-LCPDDGRDAETLLKNADSAMYKAKELGRNNFQYFATEMNDTA 456


>gi|94265727|ref|ZP_01289464.1| GGDEF [delta proteobacterium MLMS-1]
 gi|93453740|gb|EAT04116.1| GGDEF [delta proteobacterium MLMS-1]
          Length = 354

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 9/164 (5%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFG 147
           + Y  + + +R D L+GL N   F   +GS       Y   L+++  D+D FK++ND  G
Sbjct: 177 LEYEDLFEQARRDFLTGLANRRVFDERIGSLLESARRYQHPLTLLSMDLDCFKELNDTHG 236

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+ +  ++  LV +  T   + R+GG+EF      S  + A ILA+ + + +    
Sbjct: 237 HAEGDRALQRVAATLVAMVRTSDLLVRMGGDEFLLVLPDSDARAAKILAHRICRAVGALH 296

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              S    + I+I  GI        +   + RAD+ALY AK  G
Sbjct: 297 FGASGNDKLGISI--GIVPWALDLALDDWLARADEALYRAKSVG 338


>gi|89896406|ref|YP_519893.1| hypothetical protein DSY3660 [Desulfitobacterium hafniense Y51]
 gi|89335854|dbj|BAE85449.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 515

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 14/160 (8%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           S ID  +G  N    +    + + +L   +++F DID FK IND +GH  GD ++  +++
Sbjct: 341 SSIDPQTGFFNKQYMLDYDKAESPELGNTALLFIDIDNFKSINDLYGHLAGDSILKSVAE 400

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP----SI 216
            +    G+   V R GG+EF        + EA + A  +R     +++N  + P     +
Sbjct: 401 CIRCSIGSEAQVIRFGGDEFVVIFANPGKDEAYLAAEAIR-----TKVNALNLPEHYGDL 455

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +++S G+AE   + P+  +I +AD+A+Y AK  G+NR +
Sbjct: 456 TLSLSIGLAE--GRVPVRELITQADEAMYSAKSQGKNRTM 493


>gi|289624128|ref|ZP_06457082.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330865826|gb|EGH00535.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 712

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 18/187 (9%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           ++++  +  S++++L   Y ++ + +  D L+GLLN      ++          ++ L +
Sbjct: 254 AMVMTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVEGMLLRKEQTDKYLVV 310

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF      L   E
Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247
           Q A I    + ++    Q++   G  I +  S GIA    C    +  ++  AD A+Y A
Sbjct: 371 QAAKIAEKLIERVSGRRQVD---GVDITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 426

Query: 248 KKSGRNR 254
           K++GR +
Sbjct: 427 KRAGRQQ 433


>gi|254975970|ref|ZP_05272442.1| putative signaling protein [Clostridium difficile QCD-66c26]
          Length = 613

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 10/131 (7%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+DYFK+ ND +GH  GD  +  ++  +       MF+ R GGEEF   ++    +++ I
Sbjct: 490 DVDYFKEYNDTYGHYNGDIALKNITIIIKKYLKKDMFMIRYGGEEFLILSVCKDYKKSKI 549

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGR 252
               L +I++    N       ++T+S GI + C    I    II  AD+ALY AK+SGR
Sbjct: 550 FGRKLCRIVKKFLNN-------NLTVSIGI-DTCKNSSIDIREIIENADKALYKAKESGR 601

Query: 253 NRVVCFSDIEN 263
           NR + + D +N
Sbjct: 602 NRCLHYHDFKN 612


>gi|254457729|ref|ZP_05071157.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207086521|gb|EDZ63805.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 595

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 14/164 (8%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N   F+  L         Y+ K++++F D+D+FK+IND+ GH VGDKV+  +S
Sbjct: 169 DSLTDLPNRVLFMDRLQQSINIAQRYDNKVALLFIDLDHFKEINDSLGHGVGDKVLIEVS 228

Query: 160 DQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            ++         + RLGG+EF      +   E  + I+ + +  + E  +IN   G +++
Sbjct: 229 RRMKNQMRKSDTLSRLGGDEFCIILNDIIDIEDMSDIITSGMEALKEPMEIN---GHTLY 285

Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + +S G++   +     S+++  AD A+Y AK  GRN   CF D
Sbjct: 286 VGMSIGVSVYPNDGNSASSLLKNADAAMYKAKGDGRN-TYCFYD 328


>gi|90420273|ref|ZP_01228181.1| GGDEF domain protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90335607|gb|EAS49357.1| GGDEF domain protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 382

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 9/161 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N  A+       ++        ++++  D D+FKQ+ND +GH  GD+ +  +S
Sbjct: 203 DALTGLANRRAYDALIAEELAQRRGAEIGVTLLVVDFDHFKQVNDTYGHEAGDEALKVVS 262

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L        +V R GGEEF      +   +    A  +R  IE + + I+   ++ +T
Sbjct: 263 RILRSCVREGDYVCRHGGEEFTVILPQTGLPQGRRTAERIRHAIEAAPL-IAGDQNLSLT 321

Query: 220 ISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259
           +S G+A           +YR AD ALY AK +GR++VV + 
Sbjct: 322 VSIGVAGAPQHGDDPNTLYRCADAALYEAKSAGRDQVVVYG 362


>gi|241767242|ref|ZP_04764984.1| diguanylate cyclase with GAF sensor [Acidovorax delafieldii 2AN]
 gi|241362103|gb|EER58214.1| diguanylate cyclase with GAF sensor [Acidovorax delafieldii 2AN]
          Length = 369

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 77/172 (44%), Gaps = 8/172 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL  +  R++ L+  D L+GL N  +F   L               ++  DID FKQ+ND
Sbjct: 197 ELDEARERMAVLAHTDVLTGLANRRSFTERLRQQLALLQRGGAPACLLMMDIDRFKQVND 256

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD  +   +     VF     V R GGEEF A    ++  E  ++A  L   + 
Sbjct: 257 VHGHHVGDDALRHFAATCREVFRASDVVSRWGGEEFLALLPATTLAEGQVVAQRLHAALA 316

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            + +   +   ++++ S G+       P+   +   D ALY AK  GRNR V
Sbjct: 317 AAAVPDVAP-PLYLSASMGLCSFDPARPLDLTLRGLDAALYAAKTQGRNRTV 367


>gi|226357073|ref|YP_002786813.1| hypothetical protein Deide_20430 [Deinococcus deserti VCD115]
 gi|226319063|gb|ACO47059.1| Conserved hypothetical protein; putative membrane protein
           [Deinococcus deserti VCD115]
          Length = 789

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 14/171 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNF 146
           EL  ++ +++  +R D L+GLLN S  +  L            +++F D+D  K++ND  
Sbjct: 344 ELRRAHVQLAHDARHDALTGLLNRSGLVEYLRQALSPETPAPFAVLFVDLDRMKRVNDAH 403

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+++  +S +L+ V      V R+GG+EF            A+LA  +  +I + 
Sbjct: 404 GHQTGDQMLREMSRRLLTVAPAGSVVARVGGDEFVLVVPEQQRASVALLAAQVVAVI-SE 462

Query: 207 QINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRN 253
              + SG + H+T S G+A    +  H +    ++  AD A+  AK  GRN
Sbjct: 463 PAALQSG-TTHLTASVGVALFPGDGQHPD---ELVRAADMAMDGAKVEGRN 509


>gi|172036121|ref|YP_001802622.1| hypothetical protein cce_1206 [Cyanothece sp. ATCC 51142]
 gi|171697575|gb|ACB50556.1| hypothetical protein cce_1206 [Cyanothece sp. ATCC 51142]
          Length = 666

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 74/158 (46%), Gaps = 8/158 (5%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N     +S+          N+ L I+  D+D+FKQ ND FGH  GD V+  + 
Sbjct: 503 DPLTGLFNRRYLDASIDREFHRVVRENKPLGIIMVDVDHFKQFNDTFGHDAGDIVLKRIG 562

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L           R GGEEF      +S + A   A  LR  I+   I   +     IT
Sbjct: 563 TFLQENVRQSDIACRFGGEEFTIILPHASLENAIERAEQLRLGIKQLHIQYGNQSLGLIT 622

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +S G++    H E    ++  AD ALY AK+ GR+RV+
Sbjct: 623 VSLGVSAFPNHGENPRELLQNADLALYQAKEQGRDRVI 660


>gi|188992247|ref|YP_001904257.1| putative sensor protein [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167734007|emb|CAP52213.1| putative sensor protein [Xanthomonas campestris pv. campestris]
          Length = 551

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 14/168 (8%)

Query: 100 ISQLSRIDCLSGL---------LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           + Q S  D L+GL         LNH   +S      + LS++  D+D+FKQ ND  GH  
Sbjct: 379 LRQQSIRDPLTGLFNRRYLEEALNHE--LSRCTRRVQPLSVLMLDVDHFKQFNDLHGHSG 436

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+A + + L+          R GGEE            A+ +A  LR  I+  Q+ +
Sbjct: 437 GDRVLAAIGELLLAQTRGEDICCRYGGEELTIILPEVDLATASAMAEKLRAGIDGLQV-M 495

Query: 211 SSGPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + G S+  IT S G+A    H    + ++ +AD+ALY AK++GRN+VV
Sbjct: 496 ADGVSLPKITASFGVATFPGHAGNAAQLLRKADEALYRAKQAGRNQVV 543


>gi|116253512|ref|YP_769350.1| GGDEF/EAL sensory box protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115258160|emb|CAK09261.1| putative GGDEF/EAL sensory box protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 605

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 24/222 (10%)

Query: 51  FYI---GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107
           FY+   GL  F G E+ +  ++ L+   +    ++       L+E   S  RI  ++  D
Sbjct: 122 FYVDAEGLPSFIGAEWDVTADV-LLNAELARQKVVAEARALALEE---SNARIEHVADHD 177

Query: 108 CLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
            L+GL N       L           L+++  D+D FKQIND+ GH  GD V+   + ++
Sbjct: 178 YLTGLPNRRLLDKRLAELPADKSIATLAVLHLDLDQFKQINDSHGHAAGDVVLRAAALRI 237

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND----LRKIIENSQINISSGPSIH 217
                    V R+GG+EF    +  ++  E  ++  D    LRK I   Q  + SG SI 
Sbjct: 238 TAAIPANGMVARVGGDEFVIVLVNFTDLTELKLITEDVQRRLRKKIRFGQEMLQSGASIG 297

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++ S     R        ++  +D ALY AKK GRNRV  F+
Sbjct: 298 VSWSGDRRAR-------NLLAESDLALYQAKKLGRNRVEFFT 332


>gi|114047701|ref|YP_738251.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-7]
 gi|113889143|gb|ABI43194.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-7]
          Length = 752

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 11/163 (6%)

Query: 107 DCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N +A         S  S     S +  D+D FKQ+ND +GH  GD ++  + +
Sbjct: 318 DSLTGLANRNALFRQIQELISADSLTPGFSFMLMDLDNFKQVNDTYGHDKGDALLVQVVE 377

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL-RKIIENSQINISSGPSIHI 218
           Q+           RLGG+EFA    G  +++E + LA  + +++    ++++  G  ++ 
Sbjct: 378 QIKTCLNDQAVFSRLGGDEFALLLPGIVTQRELSQLAEKINQQVYRRYELSLDKG--VYS 435

Query: 219 TISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++S GIA        +  ++  ADQA+Y++K +GRNR   F++
Sbjct: 436 SVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTE 478


>gi|260687621|ref|YP_003218755.1| putative signaling protein [Clostridium difficile R20291]
 gi|260213638|emb|CBE05464.1| putative signaling protein [Clostridium difficile R20291]
          Length = 602

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 10/131 (7%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+DYFK+ ND +GH  GD  +  ++  +       MF+ R GGEEF   ++    +++ I
Sbjct: 479 DVDYFKEYNDTYGHYNGDIALKNITIIIKKYLKKDMFMIRYGGEEFLILSVCKDYKKSKI 538

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGR 252
               L +I++    N       ++T+S GI + C    I    II  AD+ALY AK+SGR
Sbjct: 539 FGRKLCRIVKKFLNN-------NLTVSIGI-DTCKNSSIDIREIIENADKALYKAKESGR 590

Query: 253 NRVVCFSDIEN 263
           NR + + D +N
Sbjct: 591 NRCLHYHDFKN 601


>gi|157372280|ref|YP_001480269.1| diguanylate cyclase [Serratia proteamaculans 568]
 gi|157324044|gb|ABV43141.1| diguanylate cyclase [Serratia proteamaculans 568]
          Length = 370

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 21/243 (8%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL 81
            SP  F +     FSI +  V    NIF+        + L  ++   L L +I    S L
Sbjct: 133 LSPRLFFL-----FSIPVLLVAIAENIFI-----NSAFSLVNLISYALMLFLIYSARSRL 182

Query: 82  LGYISGSILKELFISY--NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132
             +   +I +EL       R+S+L+  D L+G+ N   F       +    +     S++
Sbjct: 183 EQWFQLAIERELENKQLIERLSKLANRDPLTGIANRRYFDNYFDAVLLRESTLQAPFSLI 242

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
             D+D+FK+ ND++GH  GD+ +  L+  L      +   V R GGEEF      S   E
Sbjct: 243 LLDVDFFKKYNDHYGHQQGDECLTRLATCLESATRRSQDLVARYGGEEFIILLPKSDAGE 302

Query: 192 AAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           A  +A  +  ++   +  + +S  +  +T+S G+A+    +    ++  ADQALY AK+ 
Sbjct: 303 AVQVAKRIEGLLAGLAMPHAASEVAQWVTVSQGVAQWQPGQNREQLLAAADQALYRAKEL 362

Query: 251 GRN 253
           GRN
Sbjct: 363 GRN 365


>gi|71735567|ref|YP_273675.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71556120|gb|AAZ35331.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 763

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 40/225 (17%)

Query: 67  ENLSLVIISITISLLLGYISGS------------------ILKELFISYNRISQLSRIDC 108
           + L L I +IT+ ++ G IS +                  +L +L  +   + Q++  D 
Sbjct: 235 QQLGLTIAAITLLIIAGSISAAMADKKLQGKEHDLQRVNALLSQLDQARVSLQQVAHYDP 294

Query: 109 LSGLLNHSAF----ISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ L+N   F       L  +   N  L+++F DID+FK+IND+ GH  GD+++  ++++
Sbjct: 295 LTNLINRRGFNQIFAEKLQEHTYNNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAER 354

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITI 220
           +         V R GG+EF         +EA  LA    ++++  +  I+ +G  + +T 
Sbjct: 355 IRSATRVQDVVSRFGGDEFCILLSIPDYEEARHLAY---RVMQKMKETIALAGRRMVMTT 411

Query: 221 SAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           S GIA        C +     ++  AD ALY +K +GRNRV  FS
Sbjct: 412 SIGIAMFPRDGSTCDE-----LLKHADLALYQSKGNGRNRVNFFS 451


>gi|104783288|ref|YP_609786.1| diguanylate cyclase [Pseudomonas entomophila L48]
 gi|95112275|emb|CAK17002.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           entomophila L48]
          Length = 496

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+ +D L+GL N  +F    G         +  L  +  D+D+FK +ND  GH  GD+V+
Sbjct: 328 LATLDSLTGLPNRRSFDLLAGQALVEAQRDSAPLVALLIDLDHFKALNDTHGHLAGDEVL 387

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +  L         + R GGEEF      +  + A  +A  +R+  E    + +  P 
Sbjct: 388 RQFATVLQGSLRQSDILCRWGGEEFIVLLREAHGRHAIEVAEKIRRRTEQLIFSYNEQP- 446

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + +T S G++    ++ + +++ RAD ALY AK+SGRNRV
Sbjct: 447 LRLTASIGLSSLQREDTLHSLLTRADHALYRAKQSGRNRV 486


>gi|71278809|ref|YP_269948.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71144549|gb|AAZ25022.1| sensory box/GGDEF/GAF/EAL domain protein [Colwellia psychrerythraea
           34H]
          Length = 1206

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 87/181 (48%), Gaps = 21/181 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
           N++  ++  D L+ L N       L         + + L++VF D+D FK +ND  GH +
Sbjct: 765 NQLEHIAHFDILTNLPNRVLLADRLSQAMLQCSRHKQSLAVVFLDLDGFKHVNDTHGHDI 824

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQ-----EAAILANDLRKII 203
           GD+++  LS ++         + R+GG+EF A  A L + E      E  +LA     I 
Sbjct: 825 GDELLIALSVRMKEALRENDSLARIGGDEFVAVLADLTTVEDCEPVLERLLLAASEPVIF 884

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +N  +NIS+   + +     +           ++  ADQA+YVAK+SG+NR   F   ++
Sbjct: 885 DNIVLNISASIGVTLYPQDNVGA-------DLLMRHADQAMYVAKESGKNRYHLFDTAQD 937

Query: 264 N 264
           +
Sbjct: 938 D 938


>gi|89893571|ref|YP_517058.1| hypothetical protein DSY0825 [Desulfitobacterium hafniense Y51]
 gi|89333019|dbj|BAE82614.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 226

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 98/206 (47%), Gaps = 26/206 (12%)

Query: 70  SLVIISITISLLLGYISGSILKELFISY--NRISQLSR----------IDCLSGLLNHSA 117
           SLVI S+ + L  G     +L  LF ++  N+ ++L            ID L+G+ N  A
Sbjct: 31  SLVIQSLVLGLGFG-----VLNFLFANWYVNKYAKLENHNEELKSKLVIDKLTGIYNRRA 85

Query: 118 FISSLGSYNEKL--SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
               L S +  +  SI+F DID F+  N+ +GH +GD V+  + + +     +     R 
Sbjct: 86  LDLELHSLDSTMTHSIIFIDIDNFRVFNNEYGHKIGDIVLQKVCEVVCKTIRSGDRAYRY 145

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAE-RCHKEPI 233
           GGEE        ++  A  +A  +R     +Q+N +   P   ITIS G+A      E I
Sbjct: 146 GGEEIVVLLKDCNKVNAQKIAEKIR-----TQVNQLEHKPYPQITISLGVASCPTDGESI 200

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
             +I RAD AL +AK  G+N  V F+
Sbjct: 201 QNVIERADSALLLAKSYGKNCTVTFN 226


>gi|124267696|ref|YP_001021700.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylibium petroleiphilum PM1]
 gi|124260471|gb|ABM95465.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylibium petroleiphilum PM1]
          Length = 826

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           L E   +  RI +L+  D L+GL N       L         +    +++F D+D FKQI
Sbjct: 376 LTETVAAQKRIEELAFTDALTGLPNRVMLAERLDFALAMSHRHQTPFALLFLDLDRFKQI 435

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+ GH  GD+V+  ++++L         V RLGG+EF      +  + A  +A   R++
Sbjct: 436 NDSLGHVFGDRVLVEVAERLKTCLRQIDTVARLGGDEFVMLLNQTDARGAEAIA---RRV 492

Query: 203 IEN-SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252
           +E   Q     G S  +T S GIA   +  E +  +I  AD A+Y  K+ GR
Sbjct: 493 LEVLGQPFTLEGMSFSVTASIGIAMYPNDGESMDDLIKNADAAMYRVKERGR 544


>gi|255315103|ref|ZP_05356686.1| putative signaling protein [Clostridium difficile QCD-76w55]
 gi|255517773|ref|ZP_05385449.1| putative signaling protein [Clostridium difficile QCD-97b34]
          Length = 613

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 10/131 (7%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+DYFK+ ND +GH  GD  +  ++  +       MF+ R GGEEF   ++    +++ I
Sbjct: 490 DVDYFKEYNDTYGHYNGDIALKNITIIIKKYLKKDMFMIRYGGEEFLILSVCKDYKKSKI 549

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGR 252
               L +I++    N       ++T+S GI + C    I    II  AD+ALY AK+SGR
Sbjct: 550 FGRKLCRIVKKFLNN-------NLTVSIGI-DTCKNSSIDIREIIENADKALYKAKESGR 601

Query: 253 NRVVCFSDIEN 263
           NR + + D +N
Sbjct: 602 NRCLHYHDFKN 612


>gi|207738818|ref|YP_002257211.1| signal transduction protein [Ralstonia solanacearum IPO1609]
 gi|206592186|emb|CAQ59092.1| signal transduction protein [Ralstonia solanacearum IPO1609]
          Length = 782

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 13/174 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----------KLSIVFFDIDYFKQIND 144
           +  RI+  +  D L+GLLN   F ++L +  E            L+++  D+D FK IND
Sbjct: 609 TVQRIAWDATHDVLTGLLNRRGFDATLRAQVEAHRGTRAAPRTPLALLMIDLDGFKAIND 668

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD V+  +++++V    T     RLGG+EFA        Q A   A+ +R  + 
Sbjct: 669 CYGHAAGDDVLRGIAERVVQNTRTQDHAARLGGDEFAVILPNCDLQTAVTFADRIRAALA 728

Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              + +++G    I +S G+ E +      +  + R D A Y AK  GRN +  
Sbjct: 729 RQPV-LAAGARAQIALSQGVVELQADDADAAAFLARVDAACYRAKSEGRNTIAT 781


>gi|157738511|ref|YP_001491195.1| GGDEF/PAS domain-containing protein [Arcobacter butzleri RM4018]
 gi|157700365|gb|ABV68525.1| GGDEF/PAS domain protein [Arcobacter butzleri RM4018]
          Length = 1122

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 73/148 (49%), Gaps = 14/148 (9%)

Query: 114  NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            N+   I    + + KL++   DID+FK +ND +GH VGD+V+     Q V +        
Sbjct: 982  NYKKLIYEYNTNHSKLAVAMLDIDHFKLVNDTYGHDVGDEVLI----QFVEIINNSSRKN 1037

Query: 174  ----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERC 228
                R GGEEF      +SE   + +  +LRK IE+        P I   T S G     
Sbjct: 1038 DILIRWGGEEFILVLQLNSENTLSKILENLRKAIEDYDF-----PKIGKKTCSIGGTIYQ 1092

Query: 229  HKEPISTIIYRADQALYVAKKSGRNRVV 256
            + E I   I RAD+A+Y AK +GRN+V+
Sbjct: 1093 NNEDIIKTIKRADEAVYEAKAAGRNKVI 1120


>gi|149186877|ref|ZP_01865187.1| sensory box/GGDEF family protein [Erythrobacter sp. SD-21]
 gi|148829544|gb|EDL47985.1| sensory box/GGDEF family protein [Erythrobacter sp. SD-21]
          Length = 749

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 81/168 (48%), Gaps = 10/168 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           RI+ ++  D L+ L N   F +SL           ++ +++ D+D FK IND  GH VGD
Sbjct: 323 RINHMAHYDALTNLANRYLFNASLDHALNRLLDRHRICVLYLDLDQFKGINDTLGHAVGD 382

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINIS 211
            ++  +  +L         V RLGG+EF  A L   E    +      +I+EN     + 
Sbjct: 383 ALLREVGKRLENTLNGRGLVARLGGDEF--AVLLQDENLDHVAMTIAHRIMENLRDPYVI 440

Query: 212 SGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
            G  I I  S G+A    + P  S ++  AD ALY AK+ GR +VV F
Sbjct: 441 EGSEICIGTSIGVAFADPQGPSASDLMKHADLALYRAKELGRGKVVVF 488


>gi|146339697|ref|YP_001204745.1| hypothetical protein BRADO2694 [Bradyrhizobium sp. ORS278]
 gi|146192503|emb|CAL76508.1| Conserved hypothetical protein; putative membrane protein; Putative
           diguanylate cyclase (GGDEF domain) [Bradyrhizobium sp.
           ORS278]
          Length = 407

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 15/164 (9%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           + +R D L+GL N +  I +L S            ++++ D+D FK +ND FGH  GD++
Sbjct: 216 EQARRDPLTGLKNRAGLIDALQSRLDGKVSGQRGFAVLYLDLDGFKPVNDTFGHAAGDEL 275

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIE--NSQINIS 211
           +  +   L  + G    + R+GG+EF    L +S   A   A  L  ++IE   + I + 
Sbjct: 276 LKIVGRTLKDIVGPSDVIARIGGDEF--VVLSTSTDPALDHALALSERLIEAMTAPILLP 333

Query: 212 SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
            G  + I +S GIA       EP  ++++ AD ALY AK SG++
Sbjct: 334 GGARVDIGMSIGIAAAPDHGIEP-ESLLFAADAALYEAKASGKS 376


>gi|194364834|ref|YP_002027444.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
 gi|194347638|gb|ACF50761.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
          Length = 580

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 82/174 (47%), Gaps = 13/174 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIV-FFDIDYFKQINDNF 146
           +E     + + QL+  D L+GLLN  A    +    +  E  ++V   D+D FK IND  
Sbjct: 401 RERLALTSELRQLAGTDELTGLLNRRALEEVVQQRHAEGEASAVVILLDVDRFKAINDGH 460

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKI 202
           GH  GD+V+  ++  L         + R GGEEF    A   L    +    LA  LR  
Sbjct: 461 GHDAGDQVLEQVAQLLQRHLRRSDSIARYGGEEFLVLLADGDLAGGRR----LAESLRLA 516

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
           ++   I I+ G  + +T S G+A+         T++  AD A+Y AK  GR+RV
Sbjct: 517 LQQLDIVIAGGIELRVTASFGVAQGGTDALGWRTLLRAADAAMYQAKAQGRDRV 570


>gi|322833558|ref|YP_004213585.1| diguanylate cyclase with PAS/PAC sensor [Rahnella sp. Y9602]
 gi|321168759|gb|ADW74458.1| diguanylate cyclase with PAS/PAC sensor [Rahnella sp. Y9602]
          Length = 573

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 84/177 (47%), Gaps = 13/177 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           +L  +  R+   +R D L+ L N   F   L             L++V  DIDYFK  ND
Sbjct: 385 KLVKANRRLEIQARTDSLTKLPNRREFKKVLSHEYMRAKRNRTPLTVVMIDIDYFKHFND 444

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           ++GH  GD  +  ++  L          V R GGEEFAA    +  + A I+A  + + I
Sbjct: 445 HYGHLSGDACLRLVARTLRKSLKRSTDVVTRFGGEEFAAILPDTDLKGAWIVAQHIMESI 504

Query: 204 ENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           E   I  S      +TIS GIA     +    E  S I+  AD+ALY++K +GRN++
Sbjct: 505 EVLGIKHSFSEFNRVTISQGIATYMPDQDPDIEDQSDIVSAADEALYLSKNNGRNQI 561


>gi|320325677|gb|EFW81739.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320327040|gb|EFW83054.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 763

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 40/225 (17%)

Query: 67  ENLSLVIISITISLLLGYISGS------------------ILKELFISYNRISQLSRIDC 108
           + L L I +IT+ ++ G IS +                  +L +L  +   + Q++  D 
Sbjct: 235 QQLGLTIAAITLLIIAGSISAAMADKKLQGKEHDLQRVNALLSQLDQARVSLQQVAHYDP 294

Query: 109 LSGLLNHSAF----ISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ L+N   F       L  +   N  L+++F DID+FK+IND+ GH  GD+++  ++++
Sbjct: 295 LTNLINRRGFNQIFAEKLQEHTYNNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAER 354

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITI 220
           +         V R GG+EF         +EA  LA    ++++  +  I+ +G  + +T 
Sbjct: 355 IRSATRVQDVVSRFGGDEFCILLSIPDYEEARHLAY---RVMQKMKETIALAGRRMVMTT 411

Query: 221 SAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           S GIA        C +     ++  AD ALY +K +GRNRV  FS
Sbjct: 412 SIGIAVFPRDGSTCDE-----LLKHADLALYQSKGNGRNRVNFFS 451


>gi|307266780|ref|ZP_07548305.1| diguanylate cyclase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918222|gb|EFN48471.1| diguanylate cyclase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 129

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 5/131 (3%)

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            FD+D+FK++ND FGH  GD V+  ++D +           R GGEEF      +S   A
Sbjct: 1   MFDLDHFKKVNDRFGHAAGDMVLKSVADTVKERIRKTDCFARWGGEEFIILLPETSLNNA 60

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             LA +LRK I  S+I +       +T S G+ E    + I T++ R D  LY AK +GR
Sbjct: 61  VDLAEELRKQI--SRIELQGIGD--VTASFGVTEYRDTDTIDTVLIRVDNMLYEAKGAGR 116

Query: 253 NRVV-CFSDIE 262
           N V  C  DIE
Sbjct: 117 NCVKSCKFDIE 127


>gi|146306677|ref|YP_001187142.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas mendocina ymp]
 gi|145574878|gb|ABP84410.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas mendocina ymp]
          Length = 625

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 12/166 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +  L+  D L+ L N   F++ L         S  +  +I+ FD+D+FK IND +GH VG
Sbjct: 459 LQALATTDFLTQLANRRHFMAQLEAVLARLQRSPGQSAAILMFDLDHFKAINDRWGHDVG 518

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+ +   +  L          GRLGGEEFA     +   +A   A  ++  +  + I + 
Sbjct: 519 DQALRHFAAILRGQLRKTDTAGRLGGEEFAVVLSEADLPKAVQFATRVQGELARTPI-LP 577

Query: 212 SGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G  I + +S GI+    C    +   + R+D ALY AK+ GRNR+
Sbjct: 578 DGEQIFLAVSVGISSLSSCDTS-VEAALSRSDIALYCAKRGGRNRI 622


>gi|186471106|ref|YP_001862424.1| diguanylate cyclase [Burkholderia phymatum STM815]
 gi|184197415|gb|ACC75378.1| diguanylate cyclase [Burkholderia phymatum STM815]
          Length = 507

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 79/168 (47%), Gaps = 16/168 (9%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVI 155
           L+R D L+GL N  +    L     + S       ++F DID FK  ND +GH  GD  +
Sbjct: 338 LARTDALTGLHNRRSLGDILEDEWRRASRTHTPFALLFLDIDRFKAFNDAYGHQAGDAAL 397

Query: 156 AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           A ++  +      P     R GGEEF      +S   AA++A  +R  I  S++ I  G 
Sbjct: 398 ASVAHCIADNIRRPADKAARYGGEEFVVLLPDTSPAGAALVAEKIRAAI--SELPIEHGG 455

Query: 215 SIHITISAGIAERCHKEP-----ISTIIYRADQALYVAKKSGRNRVVC 257
           S +  ++A I    H  P     +S ++  AD ALY AK  GRN VV 
Sbjct: 456 SEYRRLTASIGL-AHWRPGDNADVSALMRAADDALYTAKARGRNVVVT 502


>gi|308068499|ref|YP_003870104.1| response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Paenibacillus polymyxa E681]
 gi|305857778|gb|ADM69566.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Paenibacillus polymyxa E681]
          Length = 393

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 13/168 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKV 154
            RI + S  D L+GL N   F   L  Y +   ++S++F DID FK++ND  GH   D+V
Sbjct: 226 QRIYRSSITDGLTGLYNRKYFSGRLRRYMDQGIRVSVIFCDIDNFKKLNDTQGHARADEV 285

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  +          GR GGEE  A  +    +   +      ++ E S + IS G 
Sbjct: 286 LKQVAQIMEDELDEIGLTGRYGGEELVAMVVDRRAKVGHVAERIRERVAEESIVTISIGY 345

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           S           +    P   ++ +ADQA+Y++K +G+N+V  +   E
Sbjct: 346 S---------TVKKEMNP-DELVKQADQAMYISKTTGKNKVTAYKIAE 383


>gi|300865286|ref|ZP_07110100.1| putative GGDEF domain protein [Oscillatoria sp. PCC 6506]
 gi|300336759|emb|CBN55250.1| putative GGDEF domain protein [Oscillatoria sp. PCC 6506]
          Length = 566

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 95/195 (48%), Gaps = 19/195 (9%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--- 128
           V ++I  S L G+        L I+  ++ +L+  D L+G+ N   F  +L     +   
Sbjct: 373 VALAIQQSELYGH--------LEIANRKLQRLATTDELTGIANRRQFNRALNLEWRRCAR 424

Query: 129 ----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAA 183
               LS++  DID+FK  ND +GHP GD  +  ++  +      P     R GGEEF   
Sbjct: 425 ELVSLSLIICDIDFFKLYNDCWGHPAGDACLVRVACAIATSIKRPADLAARYGGEEFTVL 484

Query: 184 ALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIS--TIIYRA 240
              +S + A  +A  +R  +E  ++ +  S  + +IT+S GIA        S  ++I  A
Sbjct: 485 LPNTSIEGAIAVARAIRTSVEILKLPHPQSSINPYITLSFGIASALPLADASPDSLIQSA 544

Query: 241 DQALYVAKKSGRNRV 255
           D+ALY AK  GRNR+
Sbjct: 545 DRALYQAKAKGRNRI 559


>gi|253559434|gb|ACT32398.1| putative diguanylate cyclase [Pseudomonas fluorescens]
          Length = 441

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 116/263 (44%), Gaps = 38/263 (14%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY--------GLEYILVENLSLV-IISI 76
            +M    + + +F A  + +A  + ++    P +        GL ++L +   L   ++I
Sbjct: 176 AWMSLIQLSYPMFAAAFLLLA--WQYWRNPRPLHAAQLVGLLGLFWMLPKTFILPFTLNI 233

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDI 136
             S ++  I+ ++  E +       Q++  D L+GL    A    +        +   D+
Sbjct: 234 MCSQVMLMIAAAVAHEAY-------QMAFRDELTGLPGRRALNERMQRLGRNYVLAMSDV 286

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+ ND  GH VGD+V+  ++ +L  + G      R GGEEFA    G +  E     
Sbjct: 287 DHFKKFNDTHGHDVGDQVLRLVASKLSKIGGG-GRAYRYGGEEFALVFAGKTIDECMPHL 345

Query: 197 NDLRKIIENSQI---NISSGP----------------SIHITISAGIAERCHKEPISTII 237
             +R+ IE   I   N  S P                S+ +T+S G+AER  +     ++
Sbjct: 346 EVIRQSIETYAIQLRNPDSRPQDDQQGRQRRSGAGASSVSVTVSIGVAERLEQRTPEEVL 405

Query: 238 YRADQALYVAKKSGRNRVVCFSD 260
             ADQALY AK +GRN V+ F  
Sbjct: 406 KSADQALYNAKGAGRNCVIAFGQ 428


>gi|149173557|ref|ZP_01852187.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Planctomyces maris DSM 8797]
 gi|148847739|gb|EDL62072.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Planctomyces maris DSM 8797]
          Length = 572

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 11/173 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQINDNFGHPVGD 152
            R+  L+  D L+GL N  + + S+    ++ S     ++F D D FK IND+ GH VGD
Sbjct: 130 QRLQHLAHHDPLTGLPNRVSILESIQKVIDRKSGKHFALLFMDFDRFKLINDSLGHDVGD 189

Query: 153 KVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQIN 209
           K++  ++D+L   V     +   RLGG+EF          + AIL  +  +++E  S+  
Sbjct: 190 KLLEAIADRLRKTVRASDTIQAARLGGDEFVVLLENLHSPDDAILVGN--RLLETLSRPY 247

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           I  G +I+ + S GI    H+ E  S ++  AD A+Y AK + ++R + F  +
Sbjct: 248 ILGGYTIYSSASIGIVTSEHRSETASEMLSDADLAMYEAKAAKQDRPIVFDRV 300


>gi|257486683|ref|ZP_05640724.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|331010155|gb|EGH90211.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 763

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 40/225 (17%)

Query: 67  ENLSLVIISITISLLLGYISGS------------------ILKELFISYNRISQLSRIDC 108
           + L L I +IT+ ++ G IS +                  +L +L  +   + Q++  D 
Sbjct: 235 QQLGLTIAAITLLIIAGSISAAMADKKLQGKEHDLQRVNALLSQLDQARVSLQQVAHYDP 294

Query: 109 LSGLLNHSAF----ISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ L+N   F       L  +   N  L+++F DID+FK+IND+ GH  GD+++  ++++
Sbjct: 295 LTNLINRRGFNQIFAEKLQEHTYNNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAER 354

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITI 220
           +         V R GG+EF         +EA  LA    ++++  +  I+ +G  + +T 
Sbjct: 355 IRSATRVQDVVSRFGGDEFCILLSIPDYEEARHLAY---RVMQKMKETIALAGRRMVMTT 411

Query: 221 SAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           S GIA        C +     ++  AD ALY +K +GRNRV  FS
Sbjct: 412 SIGIAVFPRDGSTCDE-----LLKHADLALYQSKGNGRNRVNFFS 451


>gi|187918284|ref|YP_001883847.1| two-component response regulator [Borrelia hermsii DAH]
 gi|119861132|gb|AAX16927.1| two-component response regulator [Borrelia hermsii DAH]
 gi|224022352|gb|ACN32752.1| response regulatory protein 1 [Borrelia hermsii]
          Length = 310

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 16/167 (9%)

Query: 101 SQLSRIDCLSGLLNHSAFI-----SSLGSYNEKLSIV--FFDIDYFKQINDNFGHPVGDK 153
             L+RID L+ + N   F      S + +   K +++    DIDYFK+ NDN+GH  GD+
Sbjct: 144 KNLARIDGLTQIPNRRFFTDKFAKSWMQALEHKRNVIVGMLDIDYFKKYNDNYGHTNGDE 203

Query: 154 VIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQE----AAILANDLRKIIENSQI 208
            +  ++  L  +     +   R GGEEF   ++  S +E     +IL  D+R +     +
Sbjct: 204 CLKLIARSLNKIAIKYNIDTARYGGEEFILFSVNKSLEEMINIVSILIEDIRNL---EIV 260

Query: 209 NISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           +  S  S  +T+S G+AE+  H    + II  AD  LY AK SGRN+
Sbjct: 261 HEHSSISKFVTVSVGLAEQIPHDSNFTNIIKLADDKLYEAKISGRNQ 307


>gi|146278220|ref|YP_001168379.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhodobacter sphaeroides ATCC 17025]
 gi|145556461|gb|ABP71074.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 832

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 86/171 (50%), Gaps = 12/171 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  ++R D L+GL N   F       +++L      +++   D+D FK +ND  GHPVG
Sbjct: 392 QVFHMARHDMLTGLPNRHYFGDCYEEAVAALAG-GRSVAVHMLDLDGFKAVNDTRGHPVG 450

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINI 210
           D+V+  ++D+L     +   V RLGG+EFA       +EQEA  LA  L   + +   NI
Sbjct: 451 DQVLRQVADRLRTSVRSTDTVARLGGDEFAVIQTPVRTEQEACDLARRLIAAV-SKPFNI 509

Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             G    +  S GIA  R   +    ++  AD ALY AK++GR     F +
Sbjct: 510 -DGTVPEVGASVGIAFARGRGDSAEEVMRFADVALYAAKQAGRGTFRVFDE 559


>gi|315123500|ref|YP_004065506.1| diguanylate cyclase (GGDEF domain) [Pseudoalteromonas sp. SM9913]
 gi|315017260|gb|ADT70597.1| diguanylate cyclase (GGDEF domain) [Pseudoalteromonas sp. SM9913]
          Length = 660

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 21/162 (12%)

Query: 106 IDCLSGLLNHSAFISSL------GSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+GL N   F+  L        +NE  L +++ D+DYFK IND  GH  GD+ +  +
Sbjct: 497 VDSLTGLYNRRIFLDKLDKELNKAQFNESPLVLMYLDLDYFKPINDELGHGAGDEALKEV 556

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINI------S 211
           + ++         + R+GG+EFAA     ++++  +++   ++II N S+  I      +
Sbjct: 557 ATRIKSCLRKHDIIARIGGDEFAAILPQLNDKD--VISEIAQRIITNISKPFILFDQKRT 614

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            G SI ITI+ G A    +     +   ADQALY AK SGRN
Sbjct: 615 LGISIGITITNGQAHTSLE-----VKTHADQALYEAKNSGRN 651


>gi|258405632|ref|YP_003198374.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfohalobium
           retbaense DSM 5692]
 gi|257797859|gb|ACV68796.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfohalobium
           retbaense DSM 5692]
          Length = 581

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 17/164 (10%)

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           ++ D L+GL N           ++    Y++ LS +  D+D FK  ND FGH  GD+ + 
Sbjct: 420 AQTDYLTGLPNRRRLERDGFLQLTQAHRYDKDLSFMMIDLDDFKSFNDQFGHLYGDEALK 479

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS---G 213
            +++ L           R GGEEFA   L  ++ + A      R++ E  +  +++   G
Sbjct: 480 AVAELLRSASRDADIPARWGGEEFALL-LPETDLDGA------REVAERLRARVATLDFG 532

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               +T S G+A+   ++ +S +  RADQALY AK +GRN+V  
Sbjct: 533 MGRFVTASLGVAQARAEDDLSALQDRADQALYRAKMAGRNQVAA 576


>gi|242279064|ref|YP_002991193.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
 gi|242121958|gb|ACS79654.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
          Length = 283

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 96/189 (50%), Gaps = 28/189 (14%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           S+L+EL  SY      +  D L+GL N   F  +L    E+       L++   D+D FK
Sbjct: 84  SVLQEL--SYK-----TEHDPLTGLSNRRVFERTLDQEIERTRRSKTPLTLAILDLDNFK 136

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA----AAALGSSEQEAAILA 196
           +IND +GH  GD+V+   +D L         V R+GGEEFA       L  ++Q   +L 
Sbjct: 137 KINDTWGHLKGDEVLIDFADLLSQNSRRYDLVARIGGEEFAIILSGVGLVKAKQ---LLE 193

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS----TIIYRADQALYVAKKSGR 252
             L K+   +     S  +  IT SAGI+  C K  +      +I +AD+ALY AK+SG+
Sbjct: 194 RLLDKVRGLTFAKPGSNETFSITCSAGIS--CFKGMVEVEMHELISKADKALYEAKESGK 251

Query: 253 NRVVCFSDI 261
           ++ VC +DI
Sbjct: 252 DQ-VCSADI 259


>gi|254441345|ref|ZP_05054838.1| GGDEF domain protein [Octadecabacter antarcticus 307]
 gi|198251423|gb|EDY75738.1| GGDEF domain protein [Octadecabacter antarcticus 307]
          Length = 463

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 18/165 (10%)

Query: 107 DCLSGLLNHS---AFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N       +S L + + K     +I+  D+D+FK IND +GH VGD+++   +
Sbjct: 296 DPLTGLFNRRYAMPHLSRLSAQSRKSGRKFAIMVLDLDHFKAINDTYGHKVGDEILRQTA 355

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS---I 216
            +L         + R+GGEEF  A   S    A   A  LR++I  +   +  GP    +
Sbjct: 356 SRLQDNLRAVDLLARIGGEEFLVAIPNSDVFHARTAAERLRELIGGAPFFV--GPDQKEV 413

Query: 217 HITISAGIAERCHKEP------ISTIIYRADQALYVAKKSGRNRV 255
            +T+S G++    ++P      +  ++  AD ALY AK  GRN+V
Sbjct: 414 RVTMSVGVSLSDGQDPKDMVDDLGELVNAADVALYAAKNGGRNKV 458


>gi|172060080|ref|YP_001807732.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
 gi|171992597|gb|ACB63516.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
          Length = 492

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 90/198 (45%), Gaps = 16/198 (8%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128
           I +S LL   SG  L+    + + +  L+R D L+GL N  +F   L     +       
Sbjct: 300 IALSFLL---SGQ-LRRRMRAESELVLLARTDGLTGLNNRRSFGEVLDREWRRARRTHSV 355

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187
            S++F D+D FK  ND +GH  GD  +A ++  +      P+    R GGEEF      +
Sbjct: 356 FSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPVDTAARYGGEEFVVLLPDT 415

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQAL 244
               AA +A  +R  I+   +  +      +T S G+A        EP   +I  AD+AL
Sbjct: 416 PPAGAAQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPEQDNEP-DAVIKAADEAL 474

Query: 245 YVAKKSGRNRVVCFSDIE 262
           Y AK  GRNRV     ++
Sbjct: 475 YYAKTIGRNRVAALQPLD 492


>gi|325263970|ref|ZP_08130703.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Clostridium sp. D5]
 gi|324031008|gb|EGB92290.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Clostridium sp. D5]
          Length = 639

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 9/170 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           + ++S  D L+GL+N  A    +    +   K ++   D D FKQIND +GH VGD+ + 
Sbjct: 472 LRRISETDGLTGLMNKGAAEKEVERRLAEGRKGTLFIIDADGFKQINDVYGHAVGDRALR 531

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSGPS 215
           FL + +   +     + R+GG+E      G    E+A   A  L K +E+   + S  PS
Sbjct: 532 FLGECIRQTYRGDDVLARIGGDELLIYMEGIENSESARKKAEQLEKYLESR--SESGMPS 589

Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
              T+S G A+     +  + + + ADQA+Y AK  G+ ++  + DI+  
Sbjct: 590 --FTVSIGAAQFPADGKNFAELFHAADQAMYAAKAKGKQQICFYKDIQKE 637


>gi|291617596|ref|YP_003520338.1| YciR [Pantoea ananatis LMG 20103]
 gi|291152626|gb|ADD77210.1| YciR [Pantoea ananatis LMG 20103]
 gi|327394025|dbj|BAK11447.1| diguanylate cyclase/phosphodiesterase YciR [Pantoea ananatis
           AJ13355]
          Length = 669

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFK 140
           SG+ + E   +  R+  ++  D ++GL N  A    +    E+       +V+ D+D FK
Sbjct: 227 SGTDITEERRAQERLRVMANTDGITGLPNRHAIHQQISHALERAEGSETGVVYLDLDNFK 286

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA---- 196
           ++ND +GH  GD+++  +S  ++        +GRLGG+EF   A  +S+     +A    
Sbjct: 287 KVNDAYGHMFGDQLLQAVSLAILSCLSKNQTLGRLGGDEFVVLAEHTSQAALEAMATRIL 346

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + LR+      I + SG S+ I ++       H E    +I  AD A+Y AK++ R    
Sbjct: 347 DRLRQPFRIGLIEVYSGCSVGIALAP-----LHGEDRECLIRNADTAMYHAKENNRGSYC 401

Query: 257 CFSDIENN 264
            F++  N 
Sbjct: 402 VFAEEMNR 409


>gi|288918129|ref|ZP_06412486.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EUN1f]
 gi|288350511|gb|EFC84731.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EUN1f]
          Length = 1530

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 34/176 (19%)

Query: 107 DCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N + F   L +        E +S++F D+D+FK IND +GH  GD+V+  +++
Sbjct: 472 DPLTGLANRATFDDRLATALADREPAEPVSVLFIDLDHFKPINDTYGHAAGDRVLTVVAE 531

Query: 161 QLVVVF-----------------------GTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +L  V                        GTP    R GG+EF     G  E+ AA LA 
Sbjct: 532 RLTAVLTAVPAAGAKAAAPAADAVPPMAAGTPTPC-RFGGDEFGVVLPGVDEESAAELAE 590

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGR 252
            +  ++    +  ++  ++  +I  G+    C   P   ++  AD+A+Y AK +GR
Sbjct: 591 RIGAVLREPIVLDTAEVTVDASIGVGVTRAAC---PPEHLVRTADEAMYRAKAAGR 643



 Score = 44.7 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 99   RISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVI 155
            ++ + +R D L+GL N +A    L + +      +I+  D+D FK IND FGH VGD V+
Sbjct: 1195 QLRRRARHDPLTGLPNRAALAEHLETISRDQAAFAILLVDLDRFKPINDTFGHAVGDHVL 1254


>gi|227820492|ref|YP_002824463.1| hypothetical protein NGR_b22650 [Sinorhizobium fredii NGR234]
 gi|227339491|gb|ACP23710.1| hypothetical protein NGR_b22650 [Sinorhizobium fredii NGR234]
          Length = 699

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 102/206 (49%), Gaps = 19/206 (9%)

Query: 71  LVIISITISLLLGYISGSILKELFISY-------NRISQLSRIDCLSGLLNHSAFISSLG 123
           L +I+ T+ L   ++ G +LK+L   +        R++ L+  D L+GL N S+F  +LG
Sbjct: 212 LALIAATVILASIFLFGPLLKKLRNEHRQTMAFEKRLTLLAHTDALTGLNNRSSFNFALG 271

Query: 124 SYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
           +   +L       S++  D+D FK IND  GHP GD V+  ++  L         + RLG
Sbjct: 272 NLFGELERNGAGFSMLLVDLDRFKNINDGLGHPAGDAVLRHVARALQRTLRASDVIARLG 331

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIA-ERCHKEPIS 234
           G+EFA    G   ++AA L +   + IE    +I   G S+ ++ S G A    H    +
Sbjct: 332 GDEFAVLLPGI--RDAAALESIAERAIEAIAADIPFDGRSLQVSASIGGAIVPDHAADEA 389

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSD 260
            ++   D ALY A KSGR   V F +
Sbjct: 390 GLMRIVDLALYTA-KSGRGTTVIFDE 414


>gi|301056816|ref|YP_003795027.1| hypothetical protein BACI_c53430 [Bacillus anthracis CI]
 gi|300378985|gb|ADK07889.1| conserved hypothetical protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 892

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144
           L+    ++  L+  D L+GL N   F   L         S N+ ++++F D+D FK+IND
Sbjct: 453 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 511

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
             GH +GD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  I+
Sbjct: 512 RLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 571

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            N    I     + IT S GIA    C  + ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 572 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTELMKNADMAMYRAKANGKNRFVFFS 626


>gi|149180281|ref|ZP_01858786.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Bacillus sp. SG-1]
 gi|148852473|gb|EDL66618.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Bacillus sp. SG-1]
          Length = 988

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 15/166 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++ ++  D L+ L N   F   L  +       N++  +++ D+D FK++ND  GH +G
Sbjct: 402 KVNYIAHHDYLTDLPNRRKFEQELQKFIEQSKMANQEFGVMYIDMDGFKRVNDTLGHAIG 461

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSEQEAAILANDLRKIIENSQIN 209
           DK++  +S +L+       FV R+GG+EF+     + S EQ   I     +KI+   ++ 
Sbjct: 462 DKLLVEISTRLLDCVPQNDFVARIGGDEFSVLIDKMHSLEQSTTI----AKKIVAALEVP 517

Query: 210 IS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
               G  + +T S G+A          TI+ +AD+ALY AK+ G+N
Sbjct: 518 YKIHGYELFVTASVGVAAYPQDGHDAQTILQKADKALYRAKEMGKN 563


>gi|119945812|ref|YP_943492.1| diguanylate cyclase [Psychromonas ingrahamii 37]
 gi|119864416|gb|ABM03893.1| diguanylate cyclase [Psychromonas ingrahamii 37]
          Length = 330

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLG-SYNE------KLSIVFFDIDYFKQINDNFGHPVGDK 153
            +LS  D L+GL N   F+  LG S+++      +L+++  DIDYFK  ND +GH  GD+
Sbjct: 157 KELSETDPLTGLGNKRFFMKLLGFSFDKAQREQTELAVLMIDIDYFKLYNDYYGHLKGDQ 216

Query: 154 VIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            +  +++ +          V R GGEEF     G+S Q+   LA  ++  +E  QI    
Sbjct: 217 CLKQVANAIKNSLSRKTDIVARFGGEEFIIFFTGASAQQTLQLAELIKNNVELCQITHPK 276

Query: 213 GP-SIHITISAGIAER---CHKEPISTIIYRADQALYVAKKSGRNRVV 256
            P S ++T+S G   +          T I  AD+ LY AK  GRN+ V
Sbjct: 277 SPVSDYVTVSIGAYIKIPSIENYAAETFIKYADKNLYKAKSLGRNKTV 324


>gi|109896794|ref|YP_660049.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109699075|gb|ABG38995.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
          Length = 340

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 6/159 (3%)

Query: 107 DCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+GL N   F   L ++     + ++  D+D+FK+IND  GH +GD V+   + +L  
Sbjct: 182 DVLTGLCNRRYFDEELAAHAMRPNMCLILADLDHFKKINDTHGHVMGDLVLKASAKKLQA 241

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA-- 222
                    R GGEEFA     S    A  +A  +R+ IE   +       +   ISA  
Sbjct: 242 ACREGAQAFRFGGEEFAIIVPNSKLSVARQIAETMRRSIEKIGVRDKRTSQVLGGISASF 301

Query: 223 GIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           GIAE +    P++ +I  AD+ LY AK  GRNRV+  S+
Sbjct: 302 GIAEMKTGMNPLA-LIEAADKQLYEAKNLGRNRVMPMSN 339


>gi|223984856|ref|ZP_03634963.1| hypothetical protein HOLDEFILI_02262 [Holdemania filiformis DSM
           12042]
 gi|223963149|gb|EEF67554.1| hypothetical protein HOLDEFILI_02262 [Holdemania filiformis DSM
           12042]
          Length = 609

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 77/158 (48%), Gaps = 13/158 (8%)

Query: 104 SRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           S  D L+ +LN  A    I+   S N +  +   DID FK IND  GH VGD+V+  +  
Sbjct: 441 SSYDGLTSVLNKRAAEQQITEELSENAEGCLFMIDIDDFKVINDELGHFVGDQVLTVVGT 500

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILANDLRKIIENSQINISSGPSI 216
            L   F     +GR+GG+EF      S      Q+   L   L K+++  QI+       
Sbjct: 501 LLKTCFRQNDLIGRIGGDEFIVFLHTSDPAVIHQKVKQLTKTLPKLLQREQID------A 554

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            +T+S G A     +   ++  RADQA+Y AK+ G+N+
Sbjct: 555 EVTLSIGAALSQSGDTYPSLFSRADQAMYCAKQQGKNQ 592


>gi|118480382|ref|YP_897533.1| diguanylate cyclase/phosphodiesterase [Bacillus thuringiensis str.
           Al Hakam]
 gi|118419607|gb|ABK88026.1| diguanylate cyclase/phosphodiesterase [Bacillus thuringiensis str.
           Al Hakam]
          Length = 910

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144
           L+    ++  L+  D L+GL N   F   L         S N+ ++++F D+D FK+IND
Sbjct: 471 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 529

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
             GH +GD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  I+
Sbjct: 530 RLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 589

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            N    I     + IT S GIA    C  + ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 590 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTELMKNADMAMYRAKANGKNRFVFFS 644


>gi|119945406|ref|YP_943086.1| fused adenylate cyclase and hybrid sensor diguanylate cyclase and
           response regulator [Psychromonas ingrahamii 37]
 gi|119864010|gb|ABM03487.1| diguanylate cyclase with GAF sensor [Psychromonas ingrahamii 37]
          Length = 316

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 75/156 (48%), Gaps = 11/156 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           QL+  D L+ L N   FI            +N   S+VFFD++ FK IND FGH  GD  
Sbjct: 162 QLATQDELTKLSNRRGFIKLAQHGLDICARHNISASLVFFDLNKFKSINDTFGHAEGDAA 221

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   SD +   F     +GRLGG+EFA     +S + A    +  R  IE    N  S  
Sbjct: 222 LLAFSDHMKNTFRDSDIIGRLGGDEFAVLLTDTSLEPAEKTISRFRSSIE--HYNKESNL 279

Query: 215 SIHITISAGIAERCHKEPIS--TIIYRADQALYVAK 248
              I+ S GI E  H++ IS  +++ +AD  +Y  K
Sbjct: 280 GYEISFSEGIVEIDHEKNISLESLLGQADSLMYDNK 315


>gi|1119215|gb|AAA87378.1| pleD [Caulobacter crescentus CB15]
          Length = 454

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 9/164 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL N       L S         + +S +  DID+FK+IND FGH +GD+V
Sbjct: 287 ELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEV 346

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   + +L           R GGEEF      ++  +A  +A  +R  +  S   ++ G 
Sbjct: 347 LREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGR 406

Query: 215 S-IHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +++TIS G+ A     +    ++ RAD+ +Y AK SGRN VV
Sbjct: 407 EMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVV 450


>gi|330984890|gb|EGH82993.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 763

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 40/225 (17%)

Query: 67  ENLSLVIISITISLLLGYISGS------------------ILKELFISYNRISQLSRIDC 108
           + L L I +IT+ ++ G IS +                  +L +L  +   + Q++  D 
Sbjct: 235 QQLGLTIAAITLLIIAGSISAAMADKKLQGKEHDLQRVNALLSQLDQARVSLQQVAHYDP 294

Query: 109 LSGLLNHSAF----ISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ L+N   F       L  +   N  L+++F DID+FK+IND+ GH  GD+++  ++++
Sbjct: 295 LTNLINRRGFNQIFAEKLQEHTYNNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAER 354

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITI 220
           +         V R GG+EF         +EA  LA    ++++  +  I+ +G  + +T 
Sbjct: 355 IRSATRVQDVVSRFGGDEFCILLSIPDYEEARHLAY---RVMQKMKETIALAGRRMVMTT 411

Query: 221 SAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           S GIA        C +     ++  AD ALY +K +GRNRV  FS
Sbjct: 412 SIGIAVFPRDGSTCDE-----LLKHADLALYQSKGNGRNRVNFFS 451


>gi|218459249|ref|ZP_03499340.1| putative sensory box/GGDEF family protein [Rhizobium etli Kim 5]
          Length = 298

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 65/125 (52%), Gaps = 1/125 (0%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +  FDID FK+IND  GH  GD V+   + ++          GR+GGEEF      +  +
Sbjct: 172 LAVFDIDNFKRINDRLGHHAGDLVLRDFAHRIHQNVRRNDCFGRVGGEEFLLVMPSTDPE 231

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +A  +   +  +I  S+  ++  P    T SAGIA     +  S +  RADQALY AK S
Sbjct: 232 DALAIVERMLTVIRFSRP-LADSPDFSYTCSAGIAASLPTDTASELYRRADQALYDAKLS 290

Query: 251 GRNRV 255
           GR+RV
Sbjct: 291 GRDRV 295


>gi|254431310|ref|ZP_05045013.1| diguanylate cyclase/phosphodiesterase [Cyanobium sp. PCC 7001]
 gi|197625763|gb|EDY38322.1| diguanylate cyclase/phosphodiesterase [Cyanobium sp. PCC 7001]
          Length = 657

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 77/153 (50%), Gaps = 11/153 (7%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N +  +  L         Y   + +++ D+D FK++ND +GH VGD+V+  + 
Sbjct: 491 DPLTGLANRAQLMQQLERDLALAKRYGRAIGLLYLDLDGFKEVNDRYGHAVGDRVLQLVG 550

Query: 160 DQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
            +L  V      + R GG+EF        S  E   LA  L ++  +S  ++ SG  I +
Sbjct: 551 QRLQEVLRQSDLLCRQGGDEFVVLVPDAGSLNELVTLATKLAEVCGSSLGDLGSG--IAL 608

Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250
           + S GIA    H   I  ++  AD A+YVAK++
Sbjct: 609 SASVGIARFPDHGHTIDALLVAADNAMYVAKRT 641


>gi|194290118|ref|YP_002006025.1| diguanylate cyclase with hamp domain [Cupriavidus taiwanensis LMG
           19424]
 gi|193223953|emb|CAQ69962.1| Putative diguanylate cyclase with HAMP domain [Cupriavidus
           taiwanensis LMG 19424]
          Length = 415

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 91/177 (51%), Gaps = 17/177 (9%)

Query: 89  ILKELFISYNRISQLSRI-------DCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           +L EL    N++   +R        D L+GLLN +AF+ +L        + +E  ++++ 
Sbjct: 223 LLDELQTWQNQMQHENRSLAHRANHDALTGLLNRAAFVEALEHAVRHAAANDEYAAVLYL 282

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAA 193
           D D FK +ND  GH  GD V+  ++ ++         V R+GG+EFA  A    + ++A 
Sbjct: 283 DSDDFKHVNDRHGHAAGDAVLVAVAQRIRASLRGRDTVARIGGDEFAVLATALRAPRDAI 342

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKK 249
            +A  + + + +  I++  G S+  ++S G+A    H +    +++ AD A+Y AK+
Sbjct: 343 QIAEHILQAMAHP-IDLPDGGSVQASLSIGLAVFPVHAQGSQALLHAADAAMYGAKR 398


>gi|21230901|ref|NP_636818.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66769100|ref|YP_243862.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21112512|gb|AAM40742.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574432|gb|AAY49842.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 565

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 14/168 (8%)

Query: 100 ISQLSRIDCLSGL---------LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           + Q S  D L+GL         LNH   +S      + LS++  D+D+FKQ ND  GH  
Sbjct: 393 LRQQSIRDPLTGLFNRRYLEEALNHE--LSRCTRRVQPLSVLMLDVDHFKQFNDLHGHSG 450

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+A + + L+          R GGEE            A+ +A  LR  I+  Q+ +
Sbjct: 451 GDRVLAAIGELLLAQTRGEDICCRYGGEELTIILPEVDLATASAMAEKLRAGIDGLQV-M 509

Query: 211 SSGPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + G S+  IT S G+A    H    + ++ +AD+ALY AK++GRN+VV
Sbjct: 510 ADGVSLPKITASFGVATFPGHAGNAAQLLRKADEALYRAKQAGRNQVV 557


>gi|148549736|ref|YP_001269838.1| diguanylate cyclase [Pseudomonas putida F1]
 gi|148513794|gb|ABQ80654.1| diguanylate cyclase [Pseudomonas putida F1]
          Length = 423

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 85/158 (53%), Gaps = 16/158 (10%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N + F       + +  S  + L+++F D D+FKQIND  GH VGD+V+  ++
Sbjct: 251 DSLTGLPNRAFFEGRLSRSVRNAASQQDHLALLFLDSDHFKQINDTLGHAVGDEVLISVA 310

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQ--INISSGPSI 216
           +++         V RLGG+EFA       + ++A  +A    KI+ + +  + + SG SI
Sbjct: 311 ERVRAQLREHDLVARLGGDEFAVLLTPLHTRKDAEHIAE---KIVASMKLPVQLDSGRSI 367

Query: 217 HITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGR 252
             ++S GIA       +P S ++  AD A+Y AK+  R
Sbjct: 368 STSLSVGIAYYPDDGADPAS-LLNAADAAMYQAKRERR 404


>gi|330877007|gb|EGH11156.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 756

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 40/225 (17%)

Query: 67  ENLSLVIISITISLLLGYISGS------------------ILKELFISYNRISQLSRIDC 108
           + L L I +IT+ ++ G IS +                  +L +L  +   + Q++  D 
Sbjct: 228 QQLGLTIAAITLLIIAGSISAAMADKKLQGKEHDLQRVNALLSQLDQARVSLQQVAHYDP 287

Query: 109 LSGLLNHSAF----ISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ L+N   F       L  +   N  L+++F DID+FK+IND+ GH  GD+++  ++++
Sbjct: 288 LTNLINRRGFNQIFAEKLQEHTYNNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAER 347

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITI 220
           +         V R GG+EF         +EA  LA    ++++  +  I+ +G  + +T 
Sbjct: 348 IRSATRVQDVVSRFGGDEFCILLSIPDYEEARHLAY---RVMQKMKETIALAGRRMVMTT 404

Query: 221 SAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           S GIA        C +     ++  AD ALY +K +GRNRV  FS
Sbjct: 405 SIGIAVFPRDGSTCDE-----LLKHADLALYQSKGNGRNRVNFFS 444


>gi|260220372|emb|CBA27846.1| hypothetical protein Csp_A04310 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 553

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 73/160 (45%), Gaps = 9/160 (5%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +LS  D L+GL N   F       I  +    E   ++  DID+FK++ND +GH  GD+V
Sbjct: 95  ELSLKDPLTGLANRRHFRGVLERSIDVVARSGEPALLLMLDIDHFKKVNDTYGHQAGDQV 154

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  L         V R GGEEF+             +A  +R  IE   I I+ G 
Sbjct: 155 LQAIAKALTGCVRPMDTVARFGGEEFSVMLPSCHTGFGTAVAERIRAHIEAMSIPIAPGL 214

Query: 215 SIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGR 252
           SI +T+S G   A    +   +    RAD  LY AK  GR
Sbjct: 215 SIKVTVSIGGAFAPEWVRSTATLWTERADMQLYRAKSEGR 254


>gi|258627327|ref|ZP_05722111.1| GGDEF family protein [Vibrio mimicus VM603]
 gi|258580365|gb|EEW05330.1| GGDEF family protein [Vibrio mimicus VM603]
          Length = 505

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 108/241 (44%), Gaps = 20/241 (8%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVE----NLSLVIISITISLLLGYISGSI--- 89
           +F ++V+++ N+++    + P      +L +       +   S  IS  +   + +I   
Sbjct: 265 LFFSSVMYMVNLWVVVTLIKPITAANQVLQQFKTSGGKMPDASTFISAEMKEFASTINHI 324

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQIND 144
           + +L  S   +   S  D L+ + N       L  Y        L +   DIDYFK  ND
Sbjct: 325 VTQLDESQQVLRWQSEHDPLTRISNRRYLEKQLKGYLSDRPCRYLVLYLIDIDYFKPFND 384

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KI 202
           NFGH  GD+ +  ++  L  + F     V R GGEEF       SE +A   A  +  K+
Sbjct: 385 NFGHLAGDEALCSVAQALQAIEFDGEKIVTRFGGEEFCVVLASDSELDAEQFAQQIHTKV 444

Query: 203 IENSQINISSGPSIHITISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            E +  N       ++T+S G    I+ R   +   ++ ++AD ALY AK+SGRNR V  
Sbjct: 445 AELAIANPQDSDFQYLTVSIGGVYAISPRM--DAYLSLFHQADMALYEAKESGRNRYVVR 502

Query: 259 S 259
           S
Sbjct: 503 S 503


>gi|239623927|ref|ZP_04666958.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521958|gb|EEQ61824.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 342

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 10/170 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSI-VFFDIDYFKQINDNF 146
           + EL +  +R+  L+R D L+GLLN  A    +G    N+K  I +  D+D+FK IND +
Sbjct: 4   MDELQVENDRLRILARHDSLTGLLNRGAMEEEVGDLLKNKKGGIFLMLDVDHFKDINDVY 63

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE---AAILANDLRKII 203
           GH  GD V+  L+  +  +F     +GR+GG+EFA    G    E   + +     R + 
Sbjct: 64  GHLTGDLVLQELARIMGFLFFKKDIIGRMGGDEFAIFIPGEYRNELVDSKVERLHSRAVQ 123

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
               + I  G S+ +TI A +  +   +   T+  RAD AL + K+  + 
Sbjct: 124 AGKDMGI--GNSLKLTIGADLVRK--NDTFRTLYRRADLALRIGKQQRKK 169


>gi|118443481|ref|YP_878421.1| sensory box/GGDEF family protein [Clostridium novyi NT]
 gi|118133937|gb|ABK60981.1| sensory box/GGDEF family protein [Clostridium novyi NT]
          Length = 820

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 19/183 (10%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFG 147
           ++  +I+ +   D L+GL N   F   + +  EK        +I+F DID FK +ND  G
Sbjct: 381 LAEEKITYMVYNDILTGLPNKLYFEKHIKNIIEKHDKDKGHFAIMFLDIDNFKLVNDTLG 440

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           HP GD+++   +D++  +      + R+GG+EF     G  +++   + N   K+     
Sbjct: 441 HPKGDELLKKFADRMKTIIDKNNLLARVGGDEFLLLIDGIEDEDTKHIDNIFLKM----- 495

Query: 208 INISSGPSI------HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            N+   P I       IT+S G A   +  E +  +I  AD A+Y AK SG+N +  FS 
Sbjct: 496 NNVLKEPFIIDNEEQFITVSIGTAFYPNDGENVEIMIRNADTAMYEAKNSGKNNLKFFSS 555

Query: 261 IEN 263
             N
Sbjct: 556 QAN 558


>gi|58583611|ref|YP_202627.1| response regulator [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58428205|gb|AAW77242.1| response regulator [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 321

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 10/136 (7%)

Query: 124 SYNEKLSIVFF--DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
           S  E    V F  D+D FKQIND FGH  GD+V+  L D      G   +VGR GG+EF 
Sbjct: 180 SQREGWPFVLFVLDMDNFKQINDRFGHLAGDRVLVRLVDSAYGWLGAQDWVGRWGGDEF- 238

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY-RA 240
              + +SE +A +  N    ++E    +    P +H++  + +   C +   +T +Y RA
Sbjct: 239 LIGIHASEDDATLKLNQWLSMLERE--DAGDAP-LHVSAGSAV---CEQGLDATELYCRA 292

Query: 241 DQALYVAKKSGRNRVV 256
           D A+Y AK SG  R+V
Sbjct: 293 DAAMYRAKFSGGRRLV 308


>gi|332992603|gb|AEF02658.1| diguanylate cyclase with beta propeller sensor [Alteromonas sp. SN2]
          Length = 1041

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 16/147 (10%)

Query: 131  IVFF--DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            I+FF  D+D FK IND +GH  GDKV+    ++L  +F    ++ R GGEEF      + 
Sbjct: 871  ILFFVIDLDDFKNINDTYGHQAGDKVLVETQNRLKHIFRETDYLIRWGGEEFLVVVHNTP 930

Query: 189  EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS----------TIIY 238
             ++A ++A  +  I+ +    +S G   H+T S G A      P+S          T I 
Sbjct: 931  REDAYVMAERVVDIVGSRAFQLSEGTQRHVTCSIGYAAY----PLSQQHYDIFDWQTTIG 986

Query: 239  RADQALYVAKKSGRNRVVCFSDIENNT 265
             AD ALY AK + RN  +  + I ++T
Sbjct: 987  FADTALYGAKNNRRNTWMGLTSIPSST 1013


>gi|315182656|gb|ADT89569.1| GGDEF domain [Vibrio furnissii NCTC 11218]
          Length = 660

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 12/176 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISS----LGSYNEKL---SIVFFDIDYFKQINDNFGHPVG 151
           R++ L+  D L+GL N S         L S +  L   ++++ D+D FKQ+ND+FGH  G
Sbjct: 485 RLAYLAHHDSLTGLANRSELYRVVEDILASNHNTLVPFALIYLDLDGFKQVNDSFGHDAG 544

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  +S++L+    +   V RL G+EF      S        AN L  +I  +Q  + 
Sbjct: 545 DEVLKQVSERLLSQVRSHDLVARLSGDEFVLVIYPSERDSVTHFANRLLTVI--AQDMVY 602

Query: 212 SGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            G  + +  S G+   +  + + + T++  AD A+Y AK +G+ R +        T
Sbjct: 603 RGQVLRVGASMGVYYVDDANLD-LDTVMKSADSAMYQAKCAGKGRYILMDHTRQRT 657


>gi|294979306|pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
           C-Di-Gmp
 gi|294979307|pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
           C-Di-Gmp
          Length = 459

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 9/164 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL N       L S         + +S +  DID+FK+IND FGH +GD+V
Sbjct: 287 ELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEV 346

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   + +L           R GGEEF      ++  +A  +A  +R  +  S   ++ G 
Sbjct: 347 LREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGR 406

Query: 215 S-IHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +++TIS G+ A     +    ++ RAD+ +Y AK SGRN VV
Sbjct: 407 EMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVV 450


>gi|317051641|ref|YP_004112757.1| diguanylate cyclase [Desulfurispirillum indicum S5]
 gi|316946725|gb|ADU66201.1| diguanylate cyclase [Desulfurispirillum indicum S5]
          Length = 284

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 5/157 (3%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           +++L+    ++ +L      S++G  +  LS++  DID+FK +ND +GH VGDKV+  L+
Sbjct: 131 LTRLANRRKINEVLERETIYSNIG--HTPLSLILLDIDHFKHVNDTYGHGVGDKVLIALA 188

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         VGR GGEEF     G     A  +A  +R  I        + P   +T
Sbjct: 189 GLLRHNTRDNDVVGRWGGEEFIIILPGCPIGTATEIAERIRTAIAEFPFADITHP---VT 245

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S G+      E I  ++ R D  +Y  K  GRN+VV
Sbjct: 246 ASIGVTGYISGESIEDLMGRVDHGMYSGKTGGRNQVV 282


>gi|260901790|ref|ZP_05910185.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|308108105|gb|EFO45645.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 381

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 85/174 (48%), Gaps = 13/174 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           +L  +  ++  LS  D L+ L N  + I +L    +        L  +  D DYFKQ+ND
Sbjct: 194 QLLTANKQLEALSLTDSLTQLPNRRSAIKTLKKLWDDTEHKTLPLVCIMIDADYFKQVND 253

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD V+  L+  L   F +   V RLGG+EF      +       +A  +RK + 
Sbjct: 254 TCGHEAGDLVLIELAQALKYHFRSDDIVCRLGGDEFFVICPDTGLDGGLYVAEMVRKQVS 313

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255
              +     P    +IS G+AER   E +ST   +I  AD+++Y+AK+ G+N+V
Sbjct: 314 QMLVPTCYEP-WRGSISVGVAERT--ENMSTYTDLIRAADESVYLAKQEGKNKV 364


>gi|254507683|ref|ZP_05119815.1| hypothetical protein VPMS16_3490 [Vibrio parahaemolyticus 16]
 gi|219549380|gb|EED26373.1| hypothetical protein VPMS16_3490 [Vibrio parahaemolyticus 16]
          Length = 650

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 10/166 (6%)

Query: 99  RISQLSRIDCLSGLLNHS----AFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D L+GL N +        SL    E    L++++ D+D FKQ+ND +GH  G
Sbjct: 482 RLEYLAHHDSLTGLANRAHLYRVLDDSLKDEREAKNGLALLYLDLDGFKQVNDTYGHDAG 541

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++++L+    +   V RL G+EF      +      +LA  L  +I+  Q  + 
Sbjct: 542 DEVLKQVAERLLSQVRSQDLVARLSGDEFVVLLTSTDRSSITVLAQRLISLIK--QDIVY 599

Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            G  +++ +S G+     ++ P+  +I  AD A+Y AK  G+ + V
Sbjct: 600 RGRVLNVGVSIGVHYIEQRDIPMDQLIRAADTAMYQAKSLGKGQFV 645


>gi|120406535|ref|YP_956364.1| PAS/PAC sensor-containing diguanylate cyclase [Mycobacterium
           vanbaalenii PYR-1]
 gi|119959353|gb|ABM16358.1| diguanylate cyclase with PAS/PAC sensor [Mycobacterium vanbaalenii
           PYR-1]
          Length = 448

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 35/225 (15%)

Query: 56  TPFYGLEYILVENLSLVIISITISLLLGY-------------ISGSILKELFISYNRISQ 102
           +P++G+          + + ++IS L+GY             I+  + +++ +      +
Sbjct: 234 SPYHGVVSFEAPTGKRLHVDLSISSLIGYHDPNGHYVAIAPNITHMVEQQMVLQ-----E 288

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++ +D L+GLLN  +        +         +S+   DID+FK+IND  GH VGD V+
Sbjct: 289 MANMDALTGLLNRRSGQIALEIELQKAAESGAPISVAMGDIDHFKRINDRLGHAVGDDVL 348

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L           R GGEEF      +   +A  L   +R        ++++ P 
Sbjct: 349 RSVAGSLRDGLRRNDVAIRWGGEEFLVFLPNTPLDDAVPLTERIRN-------HVATTPQ 401

Query: 216 I---HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I    +T+S G+ +    E ++  + R D A+Y AK  GR+RVV 
Sbjct: 402 IASDSVTMSFGVGQWRPGESVAAFVERIDAAMYEAKSGGRDRVVS 446


>gi|16329623|ref|NP_440351.1| PleD [Synechocystis sp. PCC 6803]
 gi|1652106|dbj|BAA17031.1| PleD [Synechocystis sp. PCC 6803]
          Length = 464

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 81/170 (47%), Gaps = 13/170 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  L+  D L+ + N   F S L             +S++  D+DYFK  ND +GH +
Sbjct: 286 QRLKHLAIYDELTQIPNRRYFTSYLEQEWRQCLRQKSPISLILCDVDYFKNYNDLYGHQM 345

Query: 151 GDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GDK +  ++  +      P  V  R GGEEF      + +  A  +   +   +  +QI+
Sbjct: 346 GDKCLQSVAKVIQNALKRPSDVLARYGGEEFIVILPYTDQSGAYTVGQRIHHCLAEAQIS 405

Query: 210 ISSGP-SIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRV 255
            +  P S ++TIS GI       H  P S +I  ADQALY AK +GRN+ 
Sbjct: 406 HADSPTSRYLTISLGIGTTVPLLHYHP-SDLIKIADQALYAAKAAGRNQT 454


>gi|327541144|gb|EGF27690.1| two-component response regulator [Rhodopirellula baltica WH47]
          Length = 308

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 10/162 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGD 152
           + + S ID ++G+ N         +  E LS       +   DID FK IND+ GH +GD
Sbjct: 134 LQEASHIDSMTGIANRRRCDIEFQTRLELLSQSGVPFCVAIVDIDCFKSINDSGGHDLGD 193

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            VI  +  +L  +      V R+GGEEFA     +S  E   L    RK +E    +   
Sbjct: 194 HVICKVGQELREISRPDDLVARIGGEEFAIIFTNTSIDELGTLQQQHRKAVERLDFHPE- 252

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +I +T+S G       +   +   RAD ALY AKK+GRN+
Sbjct: 253 --NIRVTVSVGGTCVLASDDSRSAFRRADLALYAAKKNGRNQ 292


>gi|319958161|gb|ADV90265.1| photoactive yellow protein/bacteriophytochrome/diguanylate
           cyclase/phosphodiesterase [Thermochromatium tepidum]
          Length = 1108

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 86/180 (47%), Gaps = 9/180 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           +L+ S   +   +  D L+GL N + F       I++     E+ ++   DID+FK IND
Sbjct: 674 QLYRSREEMRHRALHDALTGLPNRAQFREALCEAIAASNHSGERFAVALMDIDHFKTIND 733

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD ++  +S ++         V RLGG+EFA       + E A  A   R +  
Sbjct: 734 TLGHDKGDLLLCAVSRRIRTELPPTGLVARLGGDEFALLLRHLPDPETA-YAQAERVVAA 792

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF-SDIEN 263
             +  +    S  +T S G+           ++ RAD ALY AK++GRNRV  F SD+E+
Sbjct: 793 LRRPLVIGEDSFSVTSSLGLVMGGADLEPGELLKRADLALYRAKEAGRNRVGHFDSDLES 852


>gi|300113761|ref|YP_003760336.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Nitrosococcus watsonii C-113]
 gi|299539698|gb|ADJ28015.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosococcus watsonii C-113]
          Length = 817

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 9/163 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I+  +  D L+GL+N   F       +++L + + + ++ +FD+D FK IND  GH  G
Sbjct: 386 QITHQATHDALTGLINRWEFEHRLERVLATLKAESTEYALCYFDLDRFKIINDTCGHTAG 445

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  +S+ L         + RLGG+EF       S Q+A  +A  + K IE+ Q    
Sbjct: 446 DELLRQVSEVLEGQIRKRDTLARLGGDEFGVLLEHCSLQQAQRVATAIHKAIEDFQFTW- 504

Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253
            G S  I +S G+         I+ ++  AD A Y AK  GRN
Sbjct: 505 EGKSFRIGVSIGLVPITKASMGIAAVLKAADTACYAAKNKGRN 547


>gi|254974545|ref|ZP_05271017.1| putative signaling protein [Clostridium difficile QCD-66c26]
 gi|255313668|ref|ZP_05355251.1| putative signaling protein [Clostridium difficile QCD-76w55]
 gi|255516352|ref|ZP_05384028.1| putative signaling protein [Clostridium difficile QCD-97b34]
 gi|255649452|ref|ZP_05396354.1| putative signaling protein [Clostridium difficile QCD-37x79]
 gi|306519529|ref|ZP_07405876.1| putative signaling protein [Clostridium difficile QCD-32g58]
          Length = 1181

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++ + +  D L+ L N  A  S +  Y       K +++  DID FK INDN GH  GD 
Sbjct: 704 KLKERAEKDPLTDLYNKKASQSLIEEYITLDKKRKGALMIIDIDNFKGINDNLGHLYGDA 763

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISS 212
           V++ +++ L+ +F     VGR+GG+EF       SE    I  A +L K  E S   +  
Sbjct: 764 VLSEIANDLINLFRATDIVGRIGGDEFIVFIKDISETRDIINKAEELVKTFERSF--LGK 821

Query: 213 GPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259
           G +  I++S GIA+          ++R AD ALY AK  G+N   C++
Sbjct: 822 GRNYKISLSVGIAKFPQDGMDYMTLFRNADMALYSAKGKGKN---CYT 866


>gi|172062494|ref|YP_001810145.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria MC40-6]
 gi|171995011|gb|ACB65929.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria MC40-6]
          Length = 667

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 17/186 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDID 137
           SG  + E   +  R+++L+  D L+GL N  A    +G+           ++ I+F D+D
Sbjct: 218 SGIDVTEERNAQQRLTELANTDMLTGLPNRHAISERIGAALAADRADMRGQVGILFLDLD 277

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSS---EQEAA 193
            FK++ND++GH  GD+++  +S  +     +   + RLGG+EF      G+    E  A 
Sbjct: 278 NFKRVNDHYGHITGDRLLQDVSKIISGCLPSGATLARLGGDEFLVLFEHGTRPLLEATAQ 337

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           I+   LR  I    + I +  SI I +        H + + T+I  AD A+YVAK+ G++
Sbjct: 338 IILERLRTPIHLGLMEIYTSCSIGIAMYP-----QHGDSLETLIRSADTAMYVAKEEGKH 392

Query: 254 RVVCFS 259
               FS
Sbjct: 393 TYRVFS 398


>gi|49478974|ref|YP_039341.1| hypothetical protein BT9727_5032 [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330530|gb|AAT61176.1| conserved hypothetical protein, PAS/PAC domain, EAL domain, GGDEF
           domain [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 892

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144
           L+    ++  L+  D L+GL N   F   L         S N+ ++++F D+D FK+IND
Sbjct: 453 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 511

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
             GH +GD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  I+
Sbjct: 512 RLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 571

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            N    I     + IT S GIA    C  + ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 572 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTELMKNADMAMYRAKANGKNRFVFFS 626


>gi|309778800|ref|ZP_07673573.1| sensory box/GGDEF family protein [Ralstonia sp. 5_7_47FAA]
 gi|308922508|gb|EFP68132.1| sensory box/GGDEF family protein [Ralstonia sp. 5_7_47FAA]
          Length = 883

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 11/165 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D L+GL N S FI+ L S  E       +L++ F D+D FK +ND  GH  G
Sbjct: 440 RLRHLAAHDALTGLTNRSFFIAHLESAIESARDESRELALFFLDLDRFKSVNDTAGHACG 499

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINI 210
           D ++   + +L    G    + RLGG+EF        E +  A+LA  L + +      +
Sbjct: 500 DTLLQSAAARLTDCIGPGDVIARLGGDEFVILIDQRVEGKRIALLAERLLQAMREPFDTV 559

Query: 211 SSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           +     ++ +S G+A   H     S ++  AD A+Y AK++GRNR
Sbjct: 560 NG--RYYLGVSIGVALYPHDGISGSDLLRSADAAMYRAKQNGRNR 602


>gi|225390081|ref|ZP_03759805.1| hypothetical protein CLOSTASPAR_03831 [Clostridium asparagiforme
           DSM 15981]
 gi|225043856|gb|EEG54102.1| hypothetical protein CLOSTASPAR_03831 [Clostridium asparagiforme
           DSM 15981]
          Length = 316

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 10/179 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLS---IVFFDIDYFKQI 142
           KEL     +++ ++  D L+GL N    +  L     G    + +   ++  DID FK++
Sbjct: 138 KELRSDMEKLNYMAFRDGLTGLYNRRYVVGDLLEDIRGFQQSEQTCNVMILADIDDFKKV 197

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD+ +  ++  ++        V R GGEEF    L  +  EA  ++  +R+ 
Sbjct: 198 NDTYGHEAGDRALVCIA-HILEGHCRKHKVVRWGGEEFLIVLLNVTRNEAFEISEQIRRE 256

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           ++N  I   +G     T++ G+     +E I   I RAD+ALY  K++G+NR V + ++
Sbjct: 257 VQNFPI-FYNGIEFRCTLTLGLHAYQDQEGIEESIDRADKALYRGKRNGKNRSVWYENM 314


>gi|187926396|ref|YP_001892741.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Ralstonia pickettii 12J]
 gi|241665883|ref|YP_002984242.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Ralstonia pickettii 12D]
 gi|187728150|gb|ACD29314.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Ralstonia pickettii 12J]
 gi|240867910|gb|ACS65570.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Ralstonia pickettii 12D]
          Length = 916

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 11/165 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D L+GL N S FI+ L S  E       +L++ F D+D FK +ND  GH  G
Sbjct: 473 RLRHLAAHDALTGLTNRSFFIAHLESAIESARDESRELALFFLDLDRFKSVNDTAGHACG 532

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINI 210
           D ++   + +L    G    + RLGG+EF        E +  A+LA  L + +      +
Sbjct: 533 DTLLQSAAARLTDCIGPGDVIARLGGDEFVILIDQRVEGKRIALLAERLLQAMREPFDTV 592

Query: 211 SSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           +     ++ +S G+A   H     S ++  AD A+Y AK++GRNR
Sbjct: 593 NG--RYYLGVSIGVALYPHDGISGSDLLRSADAAMYRAKQNGRNR 635


>gi|54298413|ref|YP_124782.1| hypothetical protein lpp2477 [Legionella pneumophila str. Paris]
 gi|53752198|emb|CAH13630.1| hypothetical protein lpp2477 [Legionella pneumophila str. Paris]
          Length = 273

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 71/160 (44%), Gaps = 8/160 (5%)

Query: 107 DCLSGLLN----HSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N    + A    L     K   L+++  DID+FKQ ND FGH  GD VI   +
Sbjct: 111 DVLTGLYNRRYLNEALDRELNRCARKSLSLAVLMLDIDHFKQFNDKFGHEAGDMVIQAFA 170

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L  V      V R GGEEF         + A   A  +   +    +         IT
Sbjct: 171 NVLRQVTRKEDIVCRYGGEEFILIIPEIDLEAALQRAQSIHDAVSRIHLRYGGNALTQIT 230

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IS G+     H   +  +I  AD ALY AK SGRN+ V +
Sbjct: 231 ISIGLTMYPAHGNDMQDLITAADNALYEAKNSGRNKTVLY 270


>gi|51892837|ref|YP_075528.1| hypothetical protein STH1699 [Symbiobacterium thermophilum IAM
           14863]
 gi|51856526|dbj|BAD40684.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 720

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 13/168 (7%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+ +D L+ L N   F       ++         ++VF D+D FK IND  GHP GD+V
Sbjct: 293 RLAMVDSLTDLANRRRFQQELEEAVTEAERTGRSGALVFIDLDMFKHINDTLGHPAGDEV 352

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  L           RLGG+EFA     +    AA +A+ L   I  ++   +  P
Sbjct: 353 LRQVATILRSAIRPGDTAARLGGDEFALVLRNADGARAAQVADRLLTAIRRARFGGAEAP 412

Query: 215 SIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +T S G+    E  H   +  ++ RAD AL  AK+ GR+    F+
Sbjct: 413 -VSLTASMGVVLFPE--HGRSVRELMNRADMALLEAKEGGRDSWAPFT 457


>gi|332701461|ref|ZP_08421549.1| diguanylate cyclase [Desulfovibrio africanus str. Walvis Bay]
 gi|332551610|gb|EGJ48654.1| diguanylate cyclase [Desulfovibrio africanus str. Walvis Bay]
          Length = 411

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 86/186 (46%), Gaps = 23/186 (12%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           ++L  +F+   R++ L   D L+GL       +         ++   D+D+FK+ ND +G
Sbjct: 228 TLLSSIFMDSYRMAFL---DELTGLPTRRVLKADFKKLGGGYAVAMVDVDHFKKFNDTYG 284

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD+V+  ++ +L  V G      R GGEEF        ++ A      LR+ IE S 
Sbjct: 285 HDVGDQVLRMVASRLSKVTGGGKAY-RYGGEEFTVLFPKLGKKAARPHLEALRESIEQSG 343

Query: 208 INISS---------------GPSI-HITISAGIAER--CHKEPISTIIYRADQALYVAKK 249
            N+                  P I  +T+S G AE    +  P    I  AD+ALY AKK
Sbjct: 344 FNLRGQDRPKQKPENPKRPEKPKIVSVTVSIGAAEHGAANATP-DEAIKAADKALYKAKK 402

Query: 250 SGRNRV 255
           +GRNRV
Sbjct: 403 NGRNRV 408


>gi|313497503|gb|ADR58869.1| GGDEF domain-containing protein [Pseudomonas putida BIRD-1]
          Length = 754

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 93/184 (50%), Gaps = 18/184 (9%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
           +L +L  +   + Q +  D L+ LLN   F        +    S N +L+++F DID+FK
Sbjct: 275 LLSQLDQARASLQQAAHYDALTNLLNRRGFNQVFAERLVEHQASEN-RLAVMFLDIDHFK 333

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND+ GH  GD+++  +++ +         V R GG+EF      +S  EA  LA   +
Sbjct: 334 RINDSLGHDAGDELLKVIANHIKAATRNHDLVARFGGDEFCVVTSLNSRDEARHLA---Q 390

Query: 201 KIIENSQINIS-SGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256
           +I+   +  I   G  + +T S GI+     +  ST   ++  AD ALY +K +GRN + 
Sbjct: 391 RIMHRMKEPIDLGGRRMVMTTSIGIS--IFPDDGSTAEELLKHADLALYQSKDNGRNSLN 448

Query: 257 CFSD 260
            F+D
Sbjct: 449 FFND 452


>gi|170699576|ref|ZP_02890616.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
 gi|170135527|gb|EDT03815.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
          Length = 492

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 90/198 (45%), Gaps = 16/198 (8%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128
           I +S LL   SG  L+    + + +  L+R D L+GL N  +F   L     +       
Sbjct: 300 IALSFLL---SGQ-LRRRMRAESELVLLARTDGLTGLNNRRSFGEVLDREWRRARRTHSV 355

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187
            S++F D+D FK  ND +GH  GD  +A ++  +      P+    R GGEEF      +
Sbjct: 356 FSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPVDTAARYGGEEFVVLLPDT 415

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQAL 244
               AA +A  +R  I+   +  +      +T S G+A        EP   +I  AD+AL
Sbjct: 416 PPAGAAQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPEQDNEP-GAVIKAADEAL 474

Query: 245 YVAKKSGRNRVVCFSDIE 262
           Y AK  GRNRV     ++
Sbjct: 475 YYAKTIGRNRVAALQPLD 492


>gi|152989945|ref|YP_001355667.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
 gi|151421806|dbj|BAF69310.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
          Length = 844

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 94/196 (47%), Gaps = 14/196 (7%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-- 127
            ++++   +S LL  + GS+ K ++     +   +  D L+ L N   F   L SY E  
Sbjct: 397 KILVVESVLSTLLNVV-GSV-KAIYKYTKDLEYYATRDPLTNLYNQRVFWE-LISYEEER 453

Query: 128 ------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                 K S++  D+D FK +ND +GH  GD+ +  ++D L         V R GG+EF 
Sbjct: 454 AKRHHYKFSLLVIDLDNFKLVNDTYGHDFGDEFLNKIADLLQDCVRPGDIVARYGGDEFV 513

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYR 239
                + EQ A I+AN + K  E   I+   G  I+  +S G+A  C  H + I  +   
Sbjct: 514 IVLPETDEQGAFIVANRILKNAEKYSIHTPDGKIINPRLSIGVA-TCPDHADNIKDLFSI 572

Query: 240 ADQALYVAKKSGRNRV 255
           AD  +Y AK +G+ +V
Sbjct: 573 ADHMMYKAKSAGKAQV 588


>gi|255091933|ref|ZP_05321411.1| putative signaling protein [Clostridium difficile CIP 107932]
 gi|260682618|ref|YP_003213903.1| putative signaling protein [Clostridium difficile CD196]
 gi|260686218|ref|YP_003217351.1| putative signaling protein [Clostridium difficile R20291]
 gi|260208781|emb|CBA61658.1| putative signaling protein [Clostridium difficile CD196]
 gi|260212234|emb|CBE02947.1| putative signaling protein [Clostridium difficile R20291]
          Length = 1182

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++ + +  D L+ L N  A  S +  Y       K +++  DID FK INDN GH  GD 
Sbjct: 705 KLKERAEKDPLTDLYNKKASQSLIEEYITLDKKRKGALMIIDIDNFKGINDNLGHLYGDA 764

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISS 212
           V++ +++ L+ +F     VGR+GG+EF       SE    I  A +L K  E S   +  
Sbjct: 765 VLSEIANDLINLFRATDIVGRIGGDEFIVFIKDISETRDIINKAEELVKTFERSF--LGK 822

Query: 213 GPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259
           G +  I++S GIA+          ++R AD ALY AK  G+N   C++
Sbjct: 823 GRNYKISLSVGIAKFPQDGMDYMTLFRNADMALYSAKGKGKN---CYT 867


>gi|113968700|ref|YP_732493.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113883384|gb|ABI37436.1| diguanylate cyclase [Shewanella sp. MR-4]
          Length = 608

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 84/181 (46%), Gaps = 10/181 (5%)

Query: 90  LKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDN 145
           L++  +S N ++  ++  D L+GL N   F  +L +    +    ++  D+DYFK  ND 
Sbjct: 426 LQQALVSVNTQLRVMADTDELTGLSNRRPFTQTLETLLQQDTPFGLLMLDVDYFKSYNDT 485

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM--FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           +GH  GD  +  ++  L      P    + R+GGEEFA      S  +   +AN L   +
Sbjct: 486 YGHLEGDAALKRVAQALTRCGILPQENLLARIGGEEFAIVLQQISPIQLEAIANQLCYQV 545

Query: 204 ENSQINISSGPSIHITISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              +I   S P   IT+S G      E      +S ++ R D  LY AK  GRN VV  S
Sbjct: 546 AALEIPHKSSPKGKITLSIGGVYFPKESQDSLTLSEVLRRTDICLYRAKDQGRNTVVIDS 605

Query: 260 D 260
           +
Sbjct: 606 N 606


>gi|298505017|gb|ADI83740.1| sensor diguanylate cyclase, GAF domain-containing [Geobacter
           sulfurreducens KN400]
          Length = 688

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 88/184 (47%), Gaps = 16/184 (8%)

Query: 87  GSILKELFISYNR---ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDI 136
            SI+ E  +S  R   + QLS  D L+GL N       +         +N  L+++  D+
Sbjct: 485 ASIMIERALSIERADILEQLSITDHLTGLYNRRFLKRRMEEELARSIRHNLNLTVMLIDL 544

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK  ND  GH  GD+ +   +  L         V R GGEEF     G+S++E+  +A
Sbjct: 545 DHFKIYNDLCGHLAGDRALKRTAKILSETARQMDVVTRFGGEEFCIILPGTSKKESIFVA 604

Query: 197 NDLRKIIENSQINISSG-PSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGR 252
             +R+ IE  +       P   +T S GIA   E    E  ++++  AD ALY AK  GR
Sbjct: 605 ERIRREIEGEEFPHEENLPLGRLTASIGIASFPEDGSTE--ASLVKAADVALYRAKSDGR 662

Query: 253 NRVV 256
           NRV+
Sbjct: 663 NRVI 666


>gi|238024841|ref|YP_002909073.1| diguanylate cyclase/phosphodiesterase [Burkholderia glumae BGR1]
 gi|237879506|gb|ACR31838.1| Diguanylate cyclase/phosphodiesterase [Burkholderia glumae BGR1]
          Length = 693

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 19/169 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
             I +L+ +D L+GL N S         I +    +   +++F D+D FK IND+ GH +
Sbjct: 253 GEIVRLATLDTLTGLPNRSTLTHRIAEAIDTARRRHSGFAVLFMDLDGFKAINDSLGHSI 312

Query: 151 GDKVIAFLSDQL---VVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIEN 205
           GD+V+   S +L   V  F T   V RLGG+EF   A  +GS+  EA ++A  + +   +
Sbjct: 313 GDRVLVTFSQRLRGCVRSFDT---VARLGGDEFVVLAERIGSAS-EARVIAETVLERTRD 368

Query: 206 SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
              ++     + +T S GIA      E +  ++  AD A+Y AK+ GR 
Sbjct: 369 GAWSLDE--PLQVTPSIGIALYPRDGETVDALLKHADAAMYEAKRGGRG 415


>gi|115351075|ref|YP_772914.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
 gi|115281063|gb|ABI86580.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
          Length = 492

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 91/198 (45%), Gaps = 16/198 (8%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128
           I +S LL   SG  L+    + + +  L+R D L+GL N  +F   L     +       
Sbjct: 300 IALSFLL---SGQ-LRRRMRAESELVLLARTDGLTGLNNRRSFGEVLDREWRRARRTHSV 355

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187
            S++F D+D FK  ND +GH  GD  +A ++  +      P+    R GGEEF      +
Sbjct: 356 FSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPVDTAARYGGEEFVVLLPDT 415

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK---EPISTIIYRADQAL 244
               AA +A  +R  I+   +  +      +T S G+A    +   EP   +I  AD+AL
Sbjct: 416 PPAGAAQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPEQDNEP-DAVIKAADEAL 474

Query: 245 YVAKKSGRNRVVCFSDIE 262
           Y AK  GRNRV     ++
Sbjct: 475 YYAKTIGRNRVAALQPLD 492


>gi|323499455|ref|ZP_08104427.1| PAS/GGDEF domain-containing protein [Vibrio sinaloensis DSM 21326]
 gi|323315511|gb|EGA68550.1| PAS/GGDEF domain-containing protein [Vibrio sinaloensis DSM 21326]
          Length = 679

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 86/179 (48%), Gaps = 17/179 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS--YNE-KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           N   + + ID L+GL N   F   L     NE  L +++ DID FK IND+ GH +GDKV
Sbjct: 247 NTNQEDAHIDSLTGLYNRFGFTKRLEQLIQNETPLIMLYLDIDNFKNINDSLGHHIGDKV 306

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           I  +S +L  +      +G LGG+EF    L   E E   +A  L + I    I++ + P
Sbjct: 307 IKEVSSRLKRLLPQQAVLGHLGGDEF---GLILPEPENNRMAEMLSERI----ISLINQP 359

Query: 215 ------SIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
                 S  +  S G +A          ++  AD A+Y AK  GRNR++ F+D  N   
Sbjct: 360 FDLHHFSKRLACSIGSVAYPGDGNDARILLQNADTAMYEAKDRGRNRLIKFNDQMNKEA 418


>gi|239908980|ref|YP_002955722.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239798847|dbj|BAH77836.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 395

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 94/200 (47%), Gaps = 15/200 (7%)

Query: 66  VENLSLVIISIT-ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ 118
           V++ SL+I + + I+  LG++    L     S   I +L+ ID L+GL N   F      
Sbjct: 185 VQSYSLLISAPSLIACTLGFV----LLHRERSEAEIRRLADIDHLTGLANRRGFEAAFTA 240

Query: 119 -ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
            ++   + N+  S+   D+D+FK +ND  GH  GD V+  L   L+   G   FV R+GG
Sbjct: 241 ALARAAARNDWTSLALIDLDHFKAVNDRLGHAAGDVVLVELGRILIREVGAFGFVARIGG 300

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPIST 235
           +EF     G+    AA LA  LR  I       S G    +T + G++ R     +  + 
Sbjct: 301 DEFCVVMPGTPPDRAAGLAETLRAAIACHDWE-SYGLPEPLTATIGVSSRRGSLDDSGAD 359

Query: 236 IIYRADQALYVAKKSGRNRV 255
            +  AD AL  AK   RN V
Sbjct: 360 FLRLADMALLAAKDETRNCV 379


>gi|228930357|ref|ZP_04093361.1| Sensory box protein [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228829343|gb|EEM74976.1| Sensory box protein [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 677

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144
           L+    ++  L+  D L+GL N   F   L         S N+ ++++F D+D FK+IND
Sbjct: 238 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 296

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
             GH +GD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  I+
Sbjct: 297 RLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 356

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            N    I     + IT S GIA    C  + ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 357 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTELMKNADMAMYRAKANGKNRFVFFS 411


>gi|251794481|ref|YP_003009212.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Paenibacillus sp. JDR-2]
 gi|247542107|gb|ACS99125.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Paenibacillus sp. JDR-2]
          Length = 683

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 34/228 (14%)

Query: 53  IGLTPFYGLEYI---LVENLSL---VIISITISLLLGYISGSILKELFISYNRISQLSRI 106
           +G   F+  E I   L EN+ +   ++IS+T+  LL  +   I   +++    + +++  
Sbjct: 195 MGAASFWCGEPIASSLTENIPINLFLLISVTLVTLLIMLVTWI--AIYLDRTVLERMAYS 252

Query: 107 DCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N  A       +++KL       ++F D+D FK IND  GH +GD ++  ++ 
Sbjct: 253 DPLTGLANRHAMNRY---FDQKLDKARSYGLLFLDLDQFKIINDTLGHDIGDLLVQAVAK 309

Query: 161 QLV--VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN----DLRK--IIENSQINISS 212
           +L   V  G   F  RLGG+EF     G    E   LAN    D+RK  ++E +++ I+ 
Sbjct: 310 RLRSHVSEGAQTF--RLGGDEFLLVTRGMEPSEVEKLANRILEDIRKPYLLEGNELYITG 367

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              I ++   GI ER      S+++  AD A+Y AK+ G+N+   + +
Sbjct: 368 SIGISLSPQHGI-ER------SSLLIAADTAMYQAKRRGKNQYCLYDE 408


>gi|149909871|ref|ZP_01898521.1| hypothetical protein PE36_13974 [Moritella sp. PE36]
 gi|149807036|gb|EDM66994.1| hypothetical protein PE36_13974 [Moritella sp. PE36]
          Length = 568

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 14/166 (8%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   +  ++         + ++LS++  D+D+FK+ NDN+GH  GD V+  + 
Sbjct: 373 DPLTGLYNRRYYEETINQELMRAKRHKQELSLLMLDLDHFKRFNDNYGHDAGDYVLKTIG 432

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP-S 215
             L+        + RLGGEEF     G+  + A  +AN L K I    +   ++S G  S
Sbjct: 433 SLLLESMRGEDTICRLGGEEFIIVLPGTGIEAARQIANGLCKSINELHLAMKDLSLGKLS 492

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           + I IS        K+ ++ +   +D ALY AK+ GRN+   +SD+
Sbjct: 493 VSIGISTYPINGMQKDELTKL---SDIALYEAKERGRNQSCHYSDL 535


>gi|34498647|ref|NP_902862.1| two component sensor [Chromobacterium violaceum ATCC 12472]
 gi|34104500|gb|AAQ60858.1| probable Two component sensor [Chromobacterium violaceum ATCC
           12472]
          Length = 558

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 93/206 (45%), Gaps = 21/206 (10%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128
           S+V I + +S  + Y+SG    +LF        L+  D L+ L N   F  + G   E+ 
Sbjct: 349 SVVAILLLLSGTMRYVSGQA--QLF-------SLAFTDGLTRLYNRRHFDEAFGHAVEQC 399

Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFA 181
                 L+++  DID+FK+ ND++GH  GD+ +  ++  L   F        RLGGEEF 
Sbjct: 400 RQKRKPLALLILDIDHFKKYNDHYGHYAGDEALQKVARALKDCFRQKGQLTARLGGEEFG 459

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIY 238
                    +A   A      +   ++  S+ P   I+ S G+   C   P     T+  
Sbjct: 460 VLLTPGDTPQALSAAERFLGRLAAMELPHSASPLGKISCSIGVCA-CIPGPADSTRTLFE 518

Query: 239 RADQALYVAKKSGRNRVVCFSDIENN 264
           +ADQALY AK+ GRNR   +     N
Sbjct: 519 QADQALYEAKRGGRNRASLYQGPPGN 544


>gi|27379924|ref|NP_771453.1| hypothetical protein blr4813 [Bradyrhizobium japonicum USDA 110]
 gi|27353077|dbj|BAC50078.1| blr4813 [Bradyrhizobium japonicum USDA 110]
          Length = 917

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 16/165 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           RI+ L+  D L+ L N + F   L       +  E +++ + DID FK +ND  GH VGD
Sbjct: 470 RITHLAHYDALTDLPNRAMFHEHLRQELAAITDGEAIAVHYIDIDEFKGVNDALGHLVGD 529

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILA---NDLRKIIENSQ 207
           +++  ++  L    G   FV RLGG+EFA    A+ S +Q   ++A     +R   +   
Sbjct: 530 ELLKSVATSLSRCAGPADFVARLGGDEFAIVQGAVTSPDQVNDLVARVFQAIRAPFDCMG 589

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            ++++  SI I ++ G     H   +  I+  AD A+Y AK +GR
Sbjct: 590 HHLTTDASIGIALAPG-----HGTVLDQILKNADLAMYAAKSAGR 629


>gi|295697672|ref|YP_003590910.1| diguanylate cyclase with GAF sensor [Bacillus tusciae DSM 2912]
 gi|295413274|gb|ADG07766.1| diguanylate cyclase with GAF sensor [Bacillus tusciae DSM 2912]
          Length = 507

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 80/184 (43%), Gaps = 26/184 (14%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL    +R+   ++ D L+GL N +         ++    Y      V  D+D+FKQIND
Sbjct: 332 ELLRVRHRLIAGAQTDPLTGLANRTGLQEKFDELVAEGRRYTWPFLFVLLDLDHFKQIND 391

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI------LAND 198
             GHP GD+++  ++D L           RLGG+EFA      S Q   I      L  +
Sbjct: 392 TQGHPEGDRLLRVVADHLRRAVRPFDVASRLGGDEFALLLARCSPQTEGIQKRLAALLGE 451

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVC 257
           L +  E             + +SAG+A           +YR ADQ LY AK+ GR R+  
Sbjct: 452 LSRAFEG------------LGVSAGVAAFPEDGDEFRELYRAADQRLYEAKRRGRGRIAW 499

Query: 258 FSDI 261
             D+
Sbjct: 500 PDDV 503


>gi|291277216|ref|YP_003516988.1| GGDEF domain-containing protein [Helicobacter mustelae 12198]
 gi|290964410|emb|CBG40260.1| putative GGDEF domain protein [Helicobacter mustelae 12198]
          Length = 357

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 8/165 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ Q  R+D L+ +   S          S    Y E  SI+FFDID FK IND +GH  
Sbjct: 191 KQMEQKIRMDTLTRIYRRSYLEQLLCYCESRFKDYGENYSILFFDIDGFKFINDAYGHSA 250

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD ++   +  L     T   VGR GG+EF      +S   A  +A  + K++   +  +
Sbjct: 251 GDALLVQFARVLKSNSRTSDMVGRYGGDEFLILMPKASVSIAKEVALRICKVVAGQEF-L 309

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                I ++ S G+ +R        +++R D  LY AKK+GRN+V
Sbjct: 310 CQDVKITVSTSIGVVDRLGFASKEQMLHRVDSLLYEAKKNGRNQV 354


>gi|262403046|ref|ZP_06079606.1| GGDEF family protein [Vibrio sp. RC586]
 gi|262350545|gb|EEY99678.1| GGDEF family protein [Vibrio sp. RC586]
          Length = 391

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 101/224 (45%), Gaps = 40/224 (17%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISS 121
           Y L+   +L IIS T S    Y     +  +   Y   I +L+ +D L+GL N  +F S 
Sbjct: 154 YFLLSLFALTIISNTAS----YFFSRAINYIHTLYQEGIEELAYLDPLTGLANRWSFESW 209

Query: 122 LGSYNEKL----------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL--------V 163
               NEKL          ++VF DID FKQINDN+GH VGD+V+   + +L         
Sbjct: 210 A---NEKLKEQQGEDTITALVFLDIDNFKQINDNYGHDVGDQVLKHFAHRLRNNLRNKDR 266

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSI----HI 218
                   + R  G+EF     G           DL  I+E  S + I   P      H+
Sbjct: 267 ATNKHDYSIARFAGDEFVLMLYGVKS------LRDLDHILERISNLFIDRYPETDLLNHL 320

Query: 219 TISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260
           T+S G+A    K+ I+   +   AD+A+Y AK  G+N+   + D
Sbjct: 321 TVSIGVAIYP-KDAITLFELTRCADKAMYAAKHGGKNQYRYYQD 363


>gi|119492593|ref|ZP_01623811.1| regulatory component of sensory transduction system [Lyngbya sp.
           PCC 8106]
 gi|119453062|gb|EAW34232.1| regulatory component of sensory transduction system [Lyngbya sp.
           PCC 8106]
          Length = 455

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 13/162 (8%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ + N  AF   L     +       LS++  DIDYFK  ND++GH  GD+ +  ++
Sbjct: 293 DSLTQIGNRRAFDHYLQQEWHRAKREQLVLSLILADIDYFKSYNDHYGHQAGDECLRQIA 352

Query: 160 DQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217
             +      P  FV R GGEEFA     +  + A ++A  +   I   Q+ +  S     
Sbjct: 353 QAIHDAVKRPADFVARYGGEEFAVILPNTDIEGAKLVAELIHSQIHQLQLPHPQSTVCPF 412

Query: 218 ITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVV 256
           IT+S G++  C  +P   +  +I R D ALY AK+ GR+R+V
Sbjct: 413 ITLSQGVSA-CVPQPEDSLKMLIARTDGALYQAKEQGRDRIV 453


>gi|148657838|ref|YP_001278043.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Roseiflexus sp.
           RS-1]
 gi|148569948|gb|ABQ92093.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Roseiflexus sp. RS-1]
          Length = 796

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 93/179 (51%), Gaps = 18/179 (10%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLS----IVFFDIDYFKQINDNF 146
           ++  R++ LS  D L+GL N +  +     +L   N + S    ++  ++D FKQIND+ 
Sbjct: 350 LTEARLAYLSSHDPLTGLANRTLLLDRLQQALDRRNRERSLPCGVLLINLDRFKQINDSL 409

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE---QEAAILANDLRK 201
           GH VGD+V+  ++ +L  +      V R GG+EFA    + GS E   + A  + + L  
Sbjct: 410 GHAVGDEVLIAVAGRLKHITRPGDTVARFGGDEFAVVIDSPGSVEDIWRVAKRVQHTLNH 469

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +     +++ G SI I +  G A+        T+++ AD AL+ AK  GR+R+V F +
Sbjct: 470 PVTVQDHSLTVGVSIGIAVDDGRAKDA-----MTLLHNADTALHQAKARGRSRIVMFEE 523


>gi|30265372|ref|NP_847749.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames]
 gi|47530915|ref|YP_022264.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188183|ref|YP_031436.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne]
 gi|30260050|gb|AAP29235.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames]
 gi|47506063|gb|AAT34739.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182110|gb|AAT57486.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne]
          Length = 892

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144
           L+    ++  L+  D L+GL N   F   L         S N+ ++++F D+D FK+IND
Sbjct: 453 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 511

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
             GH +GD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  I+
Sbjct: 512 RLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 571

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            N    I     + IT S GIA    C  + ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 572 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTELMKNADMAMYRAKANGKNRFVFFS 626


>gi|327396504|dbj|BAK13925.1| diguanylate cyclase [Pantoea ananatis AJ13355]
          Length = 354

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 2/123 (1%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D+FK +ND FGH  GD ++A +S  L    G      R GG+E       S++ 
Sbjct: 227 LILIDVDHFKNVNDTFGHEAGDFLLAEISGLLRDSVGMKDIPARFGGDELGVIIRDSNDV 286

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +   LA  L++ I   Q+ + +  +   ++S GIA     + I   + RAD+ALY  K+S
Sbjct: 287 DIISLAESLQRNI--GQLRLPASVTFRCSVSIGIASADKADSIHEWLRRADKALYEVKRS 344

Query: 251 GRN 253
           GRN
Sbjct: 345 GRN 347


>gi|284048163|ref|YP_003398502.1| diguanylate cyclase with PAS/PAC sensor [Acidaminococcus fermentans
           DSM 20731]
 gi|283952384|gb|ADB47187.1| diguanylate cyclase with PAS/PAC sensor [Acidaminococcus fermentans
           DSM 20731]
          Length = 302

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIN 143
           KE  I  N +  L+  D L+GL N            S     +   ++ F DID+F   N
Sbjct: 127 KETPIVEN-LCSLAYHDPLTGLPNRMFLEALLKMRFSEFSRLHRLFAVFFSDIDHFHDFN 185

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           + +GH  GD ++   +  +         VGR GGEEF        +++   LA    +++
Sbjct: 186 EQYGHQAGDHMLKAFARTITGSMRESDTVGRWGGEEFIGICPIGKKEDIVPLAARFHQLV 245

Query: 204 ENSQINIS-SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             SQI++   G  +HIT+S GI      +   +II RAD+ ++ AKK GRN  V
Sbjct: 246 --SQISVDHEGTPLHITMSLGITTVQEGDTPESIIDRADRFMFAAKKKGRNTTV 297


>gi|260223195|emb|CBA33514.1| hypothetical protein Csp_B19440 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 316

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 16/164 (9%)

Query: 104 SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +++D L+G+ + +  +  L        S  +   +V  D+DYFK+IND +GH  GD+V+ 
Sbjct: 156 AQVDTLTGVSSRAHVLEQLDLRLNQLRSTQQPCGLVLLDLDYFKKINDTYGHTAGDEVLQ 215

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGP 214
             S  +V   G     GR+GGEEF      + + E EA +    L  + E+S   +   P
Sbjct: 216 RFSRLVVGTLGRNDGFGRIGGEEFLLLFPMVTAPEMEAKVQGI-LELVRESSP--LPEVP 272

Query: 215 SIHITISAGIAERCHKEPISTI--IYRADQALYVAKKSGRNRVV 256
             H T SAG+        +S I  +  AD+ALY AK +GR+R++
Sbjct: 273 RFHHTCSAGLV--MLDPALSAIENMRNADRALYAAKGAGRDRLI 314


>gi|229153511|ref|ZP_04281689.1| Sensory box protein [Bacillus cereus m1550]
 gi|228630115|gb|EEK86766.1| Sensory box protein [Bacillus cereus m1550]
          Length = 735

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 355

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD ++  ++ +L     +   V R GG+EF         +++AI   +    I N
Sbjct: 356 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 415

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I  G  + IT S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 416 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 469


>gi|170723990|ref|YP_001751678.1| diguanylate cyclase [Pseudomonas putida W619]
 gi|169761993|gb|ACA75309.1| diguanylate cyclase [Pseudomonas putida W619]
          Length = 427

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 83/180 (46%), Gaps = 23/180 (12%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           Q++  D L+GL    A    +        I   D+D+FK+ ND  GH VGD+V+  ++ +
Sbjct: 240 QMAFRDELTGLPGRRALNERMQRLGRNYVIAMTDVDHFKKFNDTHGHDVGDQVLRLVASR 299

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI----------- 210
           L  V        R GGEEFA    G +  E       +R++I N  + +           
Sbjct: 300 LSKV-TGGGRAYRYGGEEFALVFAGKTADECVPHVEAVREMIANYTMQLRDQNNRPQDDS 358

Query: 211 --------SSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                   S   ++ +TIS G+AER   H+ P   ++  ADQALY AK +GRN V+ +  
Sbjct: 359 AGRQRRSGSGAGTVSVTISIGVAERLIEHRNP-EEVLKSADQALYSAKGAGRNCVMVYGQ 417


>gi|158318807|ref|YP_001511315.1| serine/threonine protein kinase [Frankia sp. EAN1pec]
 gi|158114212|gb|ABW16409.1| serine/threonine protein kinase [Frankia sp. EAN1pec]
          Length = 1643

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 84/174 (48%), Gaps = 11/174 (6%)

Query: 92   ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVF--FDIDYFKQIND 144
            +L  +  R+ QLS  D L+GL N       L +       +K  I F   DID FK  ND
Sbjct: 1461 QLAAANQRLEQLSVTDQLTGLANRRRLDEVLDAEWHRATRQKTPIAFAMIDIDQFKLYND 1520

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-II 203
            ++GH  GD+ I  ++  L V         R GGEEFA    G+    AA +A+ LR  + 
Sbjct: 1521 HYGHTAGDRCIHQVATCLAVNIRGTDLAARYGGEEFAIVMAGTDLPVAARIAHRLRSAVA 1580

Query: 204  ENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255
            E ++ +  S   I +T+S G+        +  +T +  AD ALY AK  GRNRV
Sbjct: 1581 ELTEPHPLSTEQI-VTVSIGVTAIVPTPGDNPTTFVELADTALYQAKNGGRNRV 1633


>gi|311031457|ref|ZP_07709547.1| GAF sensor-containing diguanylate cyclase [Bacillus sp. m3-13]
          Length = 578

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 17/176 (9%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQINDNFGH 148
           Y    Q S    L+ L N+  F S L          +++ LS++  D+D+FK++ND +GH
Sbjct: 396 YQETKQKSERCALTKLYNYRFFESVLDKEYDKLNKGHSKSLSLIMLDLDHFKKVNDVYGH 455

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE---- 204
             G++++  ++D+L  + G    V R GGEEF          +   LA  +R  +     
Sbjct: 456 QSGNEILMQVADRLTALVGNKGTVARYGGEEFVILLPDMERGQCFELAERIRVNLATRSF 515

Query: 205 --NSQINISSGPS-IHITISAGIAERCHK-EPISTIIYRADQALYV-AKKSGRNRV 255
                I  + G   + +T S G A   +  E    +I  AD+A+YV AKK+GRN+V
Sbjct: 516 ALKQHIRETQGAQMVKVTASIGFATAPYDAEDTLDLIRHADRAMYVGAKKAGRNKV 571


>gi|301632812|ref|XP_002945474.1| PREDICTED: response regulator pleD-like [Xenopus (Silurana)
           tropicalis]
          Length = 225

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 9/165 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGD 152
           + +LS  D L+GL N     ++L    ++++       ++   ID+FKQ+ND  GH  GD
Sbjct: 20  LCELSLKDPLTGLANRRYLYATLDREIDRVTRAGDSALLLMLHIDHFKQLNDAHGHLAGD 79

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++  ++  L         + R G EEFA          A ++   +R+ IE + I IS 
Sbjct: 80  SILQSVARTLNACMRPMDTIARYGDEEFAIVLPSCQANFAHMVGERVRRAIEATPIRISP 139

Query: 213 GPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              +H+T+S G   A +  +      + RADQ LYVA+++G N +
Sbjct: 140 AEQVHVTVSIGGAFALQWIRSTKQLWVERADQQLYVARQAGCNHM 184


>gi|254411172|ref|ZP_05024949.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196181673|gb|EDX76660.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 639

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 89/176 (50%), Gaps = 20/176 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPV 150
            ++  LSRID L+ L N   F   L    ++L+       ++  DID+FK  ND FGH  
Sbjct: 465 QQLKYLSRIDDLTKLANRRDFDDHLAQEWQRLAEEEVPLALILADIDFFKLFNDAFGHLT 524

Query: 151 GDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD  +  ++  +   V  +   V R GGEEFA      + ++A  LA  +R+ ++   +N
Sbjct: 525 GDFCLEQIAQAIRECVKHSGALVARFGGEEFAIIMPHINGEQAVQLAEQIRERVK--ALN 582

Query: 210 ISSGP------SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           IS  P      S  IT+S G+A        +P+  ++  AD+AL+ +K+ GR+RV 
Sbjct: 583 ISHDPYRMCGYSSIITLSLGVASMIPHPDDDPLK-LVQAADEALFESKRQGRDRVT 637


>gi|157363606|ref|YP_001470373.1| diguanylate cyclase [Thermotoga lettingae TMO]
 gi|157314210|gb|ABV33309.1| diguanylate cyclase [Thermotoga lettingae TMO]
          Length = 1357

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 18/169 (10%)

Query: 102  QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            Q S  D L+GL     F++ L         Y   LSI+  DID FK+IND +GH +GD+V
Sbjct: 1196 QRSITDPLTGLYTRWYFVTRLYEEFERVKRYGGHLSIIMCDIDDFKKINDTYGHRIGDEV 1255

Query: 155  IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQINISSG 213
            + F+S  L         VGR GGEEF      + +  AA +A   L +IIE +  +    
Sbjct: 1256 LKFISSVLRSSTRITDIVGRYGGEEFIMILPNTPKLSAAKVAEKVLYQIIETNPFD---- 1311

Query: 214  PSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                +T+S G++   E    +P   I + AD+A Y++K+ G++ V  F 
Sbjct: 1312 --FRLTMSFGVSGYPEDNVNQPEELINF-ADKATYMSKERGKSCVTVFQ 1357


>gi|152966061|ref|YP_001361845.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216]
 gi|151360578|gb|ABS03581.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216]
          Length = 584

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 18/162 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++++ SR D L+G+ N   +       +       + L+    D+D+FK  ND +GH +G
Sbjct: 429 QLTEASRRDPLTGVGNRRHWDEVAAREVGRAERSGDPLTFALIDLDHFKAYNDAYGHLIG 488

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++   +            + R GGEEFA A  G   ++A  +A+ +R ++ ++Q    
Sbjct: 489 DDLLREFAAAAGAQLRPGDTIARWGGEEFALALPGCDLEQARDVADRIRAVVPHAQ---- 544

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
                  T +AG+A+       +T++ RAD ALY  K++GR+
Sbjct: 545 -------TATAGLAQWTPGASAATVLARADAALYRGKEAGRD 579


>gi|323139092|ref|ZP_08074150.1| diguanylate cyclase/phosphodiesterase [Methylocystis sp. ATCC
           49242]
 gi|322395656|gb|EFX98199.1| diguanylate cyclase/phosphodiesterase [Methylocystis sp. ATCC
           49242]
          Length = 763

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 11/173 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG----SYNE---KLSIVFFDIDYFKQINDNFGH 148
           +   I +++  D L+GL N   F  +LG      NE   K +++  D+D FK++ND  GH
Sbjct: 324 ALREIERIAHFDDLTGLPNRYQFQDTLGENLVQLNERGLKAALINIDLDRFKEVNDTLGH 383

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+++A +  +L      P  V RLGG+EF      + E    I A   R I E ++ 
Sbjct: 384 TVGDQLLASVGARLSACAPAPHMVARLGGDEFCVLVRATREL-PDIDALAQRMIAEMNRP 442

Query: 209 NISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               G +I I  S G+A      + PI  ++  +D ALY AK   R   V F+
Sbjct: 443 FFIDGNTISIGASIGVAAAPQDSETPIG-LLKCSDLALYRAKSGQRGTAVWFT 494


>gi|315180228|gb|ADT87142.1| GGDEF family protein [Vibrio furnissii NCTC 11218]
          Length = 505

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 104/212 (49%), Gaps = 29/212 (13%)

Query: 65  LVENLSLVIISIT-----ISLLLGYISGSILKELFISYNRISQLSRI-------DCLSGL 112
           L +N   V+I +      ISLLLG++S  +++E      ++ + ++        D L+G+
Sbjct: 298 LTQNDQWVLIGLGAGGTIISLLLGFVSYLLMREKETLNLKLEERTKELRFMVEHDSLTGI 357

Query: 113 LNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GT 168
            N  AF   L  Y   ++  ++V FDID FK IND + H  GD+++  ++  +  V  G 
Sbjct: 358 FNRRAFNRILDVYMRDDKVFTLVSFDIDNFKSINDRYSHLAGDQILVAVTKTIEKVLEGN 417

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-----ISSGPSIHITISAG 223
            +FV R GG+EF+     +  +        +R  +E SQ +     IS   SI   ++ G
Sbjct: 418 DIFV-RTGGDEFSILCHVTEREPLMRYLEKIRCTVEQSQFDTGYQLISVSLSIGAAVNHG 476

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +E+        ++ RAD  LY +K  GRN+V
Sbjct: 477 YSEQ-------ELLQRADTMLYESKAKGRNQV 501


>gi|307941581|ref|ZP_07656936.1| response regulator [Roseibium sp. TrichSKD4]
 gi|307775189|gb|EFO34395.1| response regulator [Roseibium sp. TrichSKD4]
          Length = 303

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 7/153 (4%)

Query: 107 DCLSGLLNHSAFISSLGSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+ L N   F   +    +  +  ++  DID+FK +ND +GH  GD  +A +    ++
Sbjct: 136 DPLTKLYNRRCFFEEVKKLPQDGEACLLILDIDHFKSVNDTYGHQAGD--MALVESAKLL 193

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           +      V RLGGEEFA     ++E      A   R  IE   +    G +I  T+S G+
Sbjct: 194 LDQNVGIVSRLGGEEFAIYLHDTTESVGKRAAESFRACIEAGSLEF-QGKTIRFTVSIGL 252

Query: 225 AERCHKEP--ISTIIYRADQALYVAKKSGRNRV 255
           A +       +  +   AD+ALY AKKSGRNRV
Sbjct: 253 AFKPSGVSFNVDELYGSADEALYEAKKSGRNRV 285


>gi|297537576|ref|YP_003673345.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera sp. 301]
 gi|297256923|gb|ADI28768.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera sp. 301]
          Length = 828

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 17/172 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           I  L+  D L+ L N   F  +L    E+        +++  D+D+FK IND  GH VGD
Sbjct: 400 IEHLAFHDVLTDLPNRRFFNQALNKAIERAEQHQAAFAVLIMDLDHFKTINDTMGHAVGD 459

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL--ANDLRKIIENSQINI 210
           K++  ++D++        F  R+GG+EFA    G    EA I   A+ L ++++   I  
Sbjct: 460 KLLIGVADRIKQNVDDSYFFARMGGDEFAILIHGYESTEALIAKSASLLEQVVQPYYI-- 517

Query: 211 SSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCFS 259
            +G    ++ S G+A  C+ +    +  +I  AD A+Y AK+ GRN    +S
Sbjct: 518 -AGAGYFVSASIGVA--CYPKDSRDVDDLIKYADSAMYSAKQKGRNNCQFYS 566


>gi|317047099|ref|YP_004114747.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pantoea sp. At-9b]
 gi|316948716|gb|ADU68191.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pantoea sp. At-9b]
          Length = 917

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 11/170 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           RI  LSR D L+GL N       L ++      ++ L ++  D+D FK IND +GH VGD
Sbjct: 491 RIQFLSRHDILTGLANRMQLQEFLTAHLDQATDDDPLIVISLDLDQFKPINDTWGHTVGD 550

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  +S +L  + G      RLGG+EF      +S          L++ I   Q  IS 
Sbjct: 551 AVLNQISQRLQSLMGAHELAARLGGDEFILVMREASRAGVEYRCRALQRAIH--QPVISG 608

Query: 213 GPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              + +T S GI  A +   +P   ++  AD AL  A+ +GRN+ V +S+
Sbjct: 609 SHQLSLTASMGIVCAPQDASQP-EALLRLADIALGQARAAGRNQWVWYSN 657


>gi|255305706|ref|ZP_05349878.1| putative signaling protein [Clostridium difficile ATCC 43255]
          Length = 832

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 13/165 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPV 150
           NR+   ++ D L+ + N +A+I  L + N       +  +++  DIDYFK IND +GH +
Sbjct: 669 NRLLDKAQRDSLTNIYN-AAYIRKLTAQNLLNLSTEKNGALLIIDIDYFKSINDTYGHLL 727

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQIN 209
           GDKV+  ++  L   F     VGRLGG+EF+        +E  I   ND+   I    I 
Sbjct: 728 GDKVLIDVAKALDESFAKNDIVGRLGGDEFSVYINDIINKEELINKCNDVYNHIH--LIK 785

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + +G S+ I++   IA+   +     +   AD ALY +K+ GRNR
Sbjct: 786 LPNGESLSISMGVVIAKPGQE--YDELYQIADNALYDSKRQGRNR 828


>gi|163800441|ref|ZP_02194342.1| putative virulence-mediating protein VirC [Vibrio sp. AND4]
 gi|159175884|gb|EDP60678.1| putative virulence-mediating protein VirC [Vibrio sp. AND4]
          Length = 591

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 90/197 (45%), Gaps = 15/197 (7%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--- 123
           EN   ++I+     L GYI      ++      ++Q +  D L+ + N     S L    
Sbjct: 394 ENFYFLVIAAASFWLFGYIH-----QMNKVNEELAQQNTTDPLTKVYNRRYLTSWLDKMA 448

Query: 124 --SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             S + K ++   DID+FK  ND FGH +GDK++  ++  L         + R GGEEF 
Sbjct: 449 RRSPDRKFALAVIDIDHFKAFNDQFGHDIGDKMLLNVAHALDEATRADDLLVRWGGEEFV 508

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG----IAERCHKEPISTII 237
                    + A     LR  +ENS + + S  S+  TIS G    ++ +  K       
Sbjct: 509 LLFEIKLAADCAKTLERLRLAVENSNLVVDSD-SLSATISIGAVNELSAQSMKNQWDQWF 567

Query: 238 YRADQALYVAKKSGRNR 254
             ADQALY AK+SGRN+
Sbjct: 568 LAADQALYNAKQSGRNQ 584


>gi|152995913|ref|YP_001340748.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150836837|gb|ABR70813.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 714

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 66/127 (51%), Gaps = 10/127 (7%)

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK++ND +GH  GD V+  ++  L        +VGR GGEEF      SS     
Sbjct: 594 LDIDHFKEVNDKYGHQRGDSVLVEIARVLKDSLRITDYVGRYGGEEFIIIFPESS----- 648

Query: 194 ILANDLRKIIENSQINISS---GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
               D++ IIE  ++ I+          T S G+      + I T++ RAD ALY AK+S
Sbjct: 649 --IADVKLIIEGVRLKIAQYDFEGVEQKTASFGLTAFKAGDTIETVVKRADNALYEAKES 706

Query: 251 GRNRVVC 257
           GRNRVV 
Sbjct: 707 GRNRVVV 713


>gi|311693671|gb|ADP96544.1| sensory box/GGDEF family protein [marine bacterium HP15]
          Length = 916

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 13/184 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           L +L  + + + +L+  D L+GL N   F       +S      E  +++F D+D FK+I
Sbjct: 470 LTQLKAAQSELHRLAFYDPLTGLANRQLFRDRLNHVVSRSRRSGEPAALMFLDLDGFKRI 529

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA--ILANDLR 200
           ND  GH  GD+++  ++  LV        V RLGG+EF       S+ +AA  +    LR
Sbjct: 530 NDTLGHDSGDELLCQVAQWLVGCVREEDSVARLGGDEFVVLLSRISDSDAAGKVAETILR 589

Query: 201 KIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +  ++N      + IT+S GI    H  E   T++  AD A+Y AK+ GRN    F+
Sbjct: 590 SLCQRIRLN---DHEVGITVSIGITMIPHDSEDAGTLMKYADLAMYRAKELGRNTFQFFT 646

Query: 260 DIEN 263
              N
Sbjct: 647 PAMN 650


>gi|293610609|ref|ZP_06692909.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826953|gb|EFF85318.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 569

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 9/164 (5%)

Query: 99  RISQLSRIDCLSGLLNH---SAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152
           ++  ++  D L+G+ N    S ++  + SY +K +   ++  DID FKQ+ND +GH VGD
Sbjct: 406 QLKNIANTDPLTGVSNRLALSEYLKIVESYPQKFTQTCLMIIDIDRFKQVNDQYGHIVGD 465

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
           +VI  +++QL     +   + R GG+EF          +A +LA  +R  I   +I +S 
Sbjct: 466 RVIVSIAEQLKQNIRSSDLIVRYGGDEFLILLEQVQFVDARLLAEKIRIAISLEEICLSG 525

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S   +H+++S G A          ++ +AD++L  AK  GRN V
Sbjct: 526 SDEKLHVSVSIGFA--IGAASWIELLEKADRSLLRAKARGRNAV 567


>gi|295675116|ref|YP_003603640.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
 gi|295434959|gb|ADG14129.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
          Length = 505

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 92/197 (46%), Gaps = 13/197 (6%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------ 124
           ++I+   + +L  ++   + +   + +  + +L+  D L+GL N  A   +L        
Sbjct: 306 MLILGGGVIVLAAWLGAELRRRQRVEHE-LERLAGTDGLTGLPNRRALCETLDREWLRAR 364

Query: 125 -YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAA 182
                LS++F DID+FK  ND +GH  GD  +  ++  +  V   P   VGR GGEEF  
Sbjct: 365 RTGSVLSLLFVDIDHFKAYNDTYGHQAGDVALTAVARCIRRVSQRPGDCVGRYGGEEFVV 424

Query: 183 AALGSSEQEAAILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
               +    A ++A  +R  I+    + +    G  + ++I A ++       +  ++  
Sbjct: 425 VLPDTDVTGAEVVAEKIRAAIDELDIAHVGCEFG-RVTVSIGATMSRPDRAMDVGAVVRA 483

Query: 240 ADQALYVAKKSGRNRVV 256
           AD+ALY AK  GRN V 
Sbjct: 484 ADEALYSAKAGGRNMVA 500


>gi|229112762|ref|ZP_04242294.1| Sensory box protein [Bacillus cereus Rock1-15]
 gi|228670596|gb|EEL25908.1| Sensory box protein [Bacillus cereus Rock1-15]
          Length = 735

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 355

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD ++  ++ +L     +   V R GG+EF         +++AI   +    I N
Sbjct: 356 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 415

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I  G  + IT S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 416 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 469


>gi|218900474|ref|YP_002448885.1| sensory box/GGDEF family protein [Bacillus cereus G9842]
 gi|218541726|gb|ACK94120.1| sensory box/GGDEF family protein [Bacillus cereus G9842]
          Length = 735

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVMFLDLDRFKKINDR 355

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD ++  ++++L     +   V R GG+EF         +++AI   +    I N
Sbjct: 356 LGHDVGDLLLIEVANRLRGCLRSKDVVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 415

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I  G  + IT S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 416 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 469


>gi|188575141|ref|YP_001912070.1| Putative signal protein with HAMP and GGDEF domains [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188519593|gb|ACD57538.1| Putative signal protein with HAMP and GGDEF domains [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 296

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 10/136 (7%)

Query: 124 SYNEKLSIVFF--DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
           S  E    V F  D+D FKQIND FGH  GD+V+  L D      G   +VGR GG+EF 
Sbjct: 155 SQREGWPFVLFVLDMDNFKQINDRFGHLAGDRVLVRLVDSAYGWLGAQDWVGRWGGDEF- 213

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY-RA 240
              + +SE +A +  N    ++E    +    P +H++  + +   C +   +T +Y RA
Sbjct: 214 LIGIHASEDDATLKLNQWLSMLERE--DAGDAP-LHVSAGSAV---CEQGLDATELYCRA 267

Query: 241 DQALYVAKKSGRNRVV 256
           D A+Y AK SG  R+V
Sbjct: 268 DAAMYRAKFSGGRRLV 283


>gi|218778795|ref|YP_002430113.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760179|gb|ACL02645.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfatibacillum alkenivorans AK-01]
          Length = 858

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 91/170 (53%), Gaps = 21/170 (12%)

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GL N  A        +++   Y E L++++ D+D FKQ+ND+ GH VGD+++ 
Sbjct: 428 ARHDDLTGLANRGALREWLERSLNAAKRYEEMLALLYIDLDRFKQVNDSLGHVVGDQLLK 487

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKI------IENSQIN 209
            +  +L+ +      + R+GG+EF  AA+   S+++A  +   +R+I      I++ ++ 
Sbjct: 488 EVVSRLLRIVRDSDILARMGGDEFVLAASRLESKEDALGMGRRIRQIFREPYRIQDHELY 547

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +  SI I+     A+   K     +I  AD A+Y AK  G NR+  F 
Sbjct: 548 LDA--SIGISFFPEDAQDAGK-----LIRHADTAMYYAKIRGGNRLAEFE 590


>gi|84625416|ref|YP_452788.1| response regulator [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84369356|dbj|BAE70514.1| response regulator [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 296

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 10/136 (7%)

Query: 124 SYNEKLSIVFF--DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
           S  E    V F  D+D FKQIND FGH  GD+V+  L D      G   +VGR GG+EF 
Sbjct: 155 SQREGWPFVLFVLDMDNFKQINDRFGHLAGDRVLVRLVDSAYGWLGAQDWVGRWGGDEF- 213

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY-RA 240
              + +SE +A +  N    ++E    +    P +H++  + +   C +   +T +Y RA
Sbjct: 214 LIGIHASEDDATLKLNQWLSMLERE--DAGDAP-LHVSAGSAV---CEQGLDATELYCRA 267

Query: 241 DQALYVAKKSGRNRVV 256
           D A+Y AK SG  R+V
Sbjct: 268 DAAMYRAKFSGGRRLV 283


>gi|16264177|ref|NP_436969.1| hypothetical protein SM_b20447 [Sinorhizobium meliloti 1021]
 gi|15140302|emb|CAC48829.1| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021]
          Length = 564

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 74/163 (45%), Gaps = 15/163 (9%)

Query: 107 DCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GL N   F   L          +L+++  D+D FK IND  GH  GD V+   +D+
Sbjct: 138 DVLTGLPNRRQFSDQLRGALPVPNGARLALMQIDLDDFKPINDTLGHGAGDAVLKMAADR 197

Query: 162 LVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
           +  V     F  RL G+EFA     A     +E+ A  L N  ++      IN+  G S+
Sbjct: 198 IRSVLRDREFAYRLAGDEFAVIQWRADQPREAERLADALINAFKEPFTVEGINVFVGASV 257

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I ++        +     ++  AD ALY AKK GR R   F+
Sbjct: 258 GIAVAPADGNEVEQ-----LMKAADIALYAAKKDGRGRSSTFT 295


>gi|16331870|ref|NP_442598.1| PleD-like-protein [Synechocystis sp. PCC 6803]
 gi|1001789|dbj|BAA10669.1| slr0302 [Synechocystis sp. PCC 6803]
          Length = 768

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 12/169 (7%)

Query: 98  NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ + S  D L+ L N        S  ++    ++  + ++  D+D+FK+ ND+ GH  
Sbjct: 594 EQLEEQSLRDPLTKLFNRRYLEQRLSQELARAKRHHYSVGVLMIDVDHFKRFNDSLGHDA 653

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+++A +   L     T     R GGEE       ++ +EA+  A  LR+ I   +I  
Sbjct: 654 GDRILASIGTLLKNNIRTSDVACRYGGEEITIILPDATLEEASQKAEFLRQAIAEMKIEY 713

Query: 211 SSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVV 256
           S      +T S G+A  C   H E    II  AD+ALY AK++GRNRV+
Sbjct: 714 SGKIVNSVTASFGVA--CYPDHGETGQEIIQIADKALYDAKQAGRNRVI 760


>gi|325681063|ref|ZP_08160595.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
 gi|324107292|gb|EGC01576.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
          Length = 363

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 16/168 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-----------NEKLSIVFFDIDYFKQINDNFGH 148
           + +L+ ID L+ L N  A    +G Y            +  ++   DID FKQIND++GH
Sbjct: 199 LQKLATIDPLTRLFNRRA----MGEYLKLVHLNSERTGKGYAVCLGDIDDFKQINDSYGH 254

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD  +  ++D +        +  R GGEEF      +  +     A  +R+ I +   
Sbjct: 255 GAGDDALKQVADIIEHSVPAEGYAARWGGEEFLFVIPNADIEAGRECAEKIRRAIADRTF 314

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             S      +T++ G+AE    + I  +I  AD+ LY  K +G+NRV+
Sbjct: 315 K-SGEKRFGVTMTIGVAEGKPDDDIEKMISLADKRLYAGKSAGKNRVI 361


>gi|300022463|ref|YP_003755074.1| diguanylate cyclase/phosphodiesterase [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524284|gb|ADJ22753.1| diguanylate cyclase/phosphodiesterase [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 660

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 10/172 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +++  D L+G+ N  AF++ L + N +      SI + D+D FK +ND  GH VGD ++ 
Sbjct: 225 RVAMTDGLTGIANRRAFMARLNALNNRAGAKSFSIFYIDLDRFKSVNDALGHAVGDALLK 284

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPS 215
            +S ++  +      V RLGG+EFA  A    E+  A+ LA   R ++  S+     G  
Sbjct: 285 SVSARITGLVREGDLVARLGGDEFAIVAQDIRERAFASSLAE--RLVVSLSEPYDLEGQK 342

Query: 216 IHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCF-SDIENNT 265
           + I    G+A  C       ++ + AD A++ AK++GR     F +D++ + 
Sbjct: 343 VQIGACVGVALACESGVGGEMLLKQADLAMFAAKEAGRGMYCIFEADMQRSA 394


>gi|168203415|gb|ACA21550.1| putative diguanylate cyclase [Candidatus Pelagibacter ubique]
          Length = 335

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 74/160 (46%), Gaps = 20/160 (12%)

Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL N  + I SL S+   N    I+  D+D+FK +ND  GHPVGD+V+  LS+ L 
Sbjct: 179 DPLTGLGNRRSLIESLASFARQNISFGIIQLDLDHFKTVNDQLGHPVGDRVLVELSNILR 238

Query: 164 VVFGTPMFVGRLGGEEF---------AAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
                     RLGG+EF             LG +E+  A L   L       Q+ +S G 
Sbjct: 239 QEIRAHDVAVRLGGDEFILLITGTNDPTELLGLAERLLARLKPPLTIQTHKVQLGLSMG- 297

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
                    I E   +  +  I+   DQALY +K+ G+ R
Sbjct: 298 -------GRIVEAAERWSMIDILQAVDQALYHSKRRGKGR 330


>gi|218895683|ref|YP_002444094.1| sensory box/GGDEF family protein [Bacillus cereus G9842]
 gi|218544852|gb|ACK97246.1| sensory box/GGDEF family protein [Bacillus cereus G9842]
          Length = 567

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 6/172 (3%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHP 149
           L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  GH 
Sbjct: 135 LRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLGHM 194

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD +++ ++ +L  V G    + RLGG+EF        + + + LA  +    +     
Sbjct: 195 IGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQAP--F 252

Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  G  ++I+ S G+         + T++  +D A+Y AK+ GRN    F+D
Sbjct: 253 MLEGHEVYISASLGLCSYPQDGLDVETLLKNSDLAMYSAKEQGRNAACFFTD 304


>gi|219670549|ref|YP_002460984.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2]
 gi|219540809|gb|ACL22548.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2]
          Length = 248

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 79/174 (45%), Gaps = 26/174 (14%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GL N           +       ++ S+   DID FK IND +GH  GDKVI  ++
Sbjct: 75  DSMTGLPNKGFMYLRLNIDMEKYAKQEKEYSLAMIDIDRFKNINDTYGHLAGDKVIKEVA 134

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--- 216
             L         V R GGEEFA     +SE+ AA L   +R ++EN       GP I   
Sbjct: 135 GLLRKNVRASDEVIRWGGEEFAILLPETSEEGAANLIERIRNLMENHDF----GPEIASQ 190

Query: 217 HITISAGIAERCHKEPIST-----------IIYRADQALYVAKKSGRNRVVCFS 259
            +T SAG+      E +             I+  +DQALY AKK+ RN V  FS
Sbjct: 191 KVTFSAGVVSYKKLEEVKAKENRLTNNTDLIVNFSDQALYQAKKT-RNTVWRFS 243


>gi|16126701|ref|NP_421265.1| response regulator PleD [Caulobacter crescentus CB15]
 gi|221235482|ref|YP_002517919.1| response regulator PleD [Caulobacter crescentus NA1000]
 gi|60390590|sp|Q9A5I5|PLED_CAUCR RecName: Full=Response regulator PleD; AltName: Full=Stalked cell
           differentiation-controlling protein; Includes: RecName:
           Full=Diguanylate cyclase; Short=DGC; AltName:
           Full=Diguanylate kinase
 gi|302425180|sp|B8GZM2|PLED_CAUCN RecName: Full=Response regulator PleD; AltName: Full=Stalked cell
           differentiation-controlling protein; Includes: RecName:
           Full=Diguanylate cyclase; Short=DGC; AltName:
           Full=Diguanylate kinase
 gi|13424011|gb|AAK24433.1| stalked-cell differentiation controlling protein [Caulobacter
           crescentus CB15]
 gi|220964655|gb|ACL96011.1| GGDEF/response regulator protein pleD [Caulobacter crescentus
           NA1000]
          Length = 454

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 9/164 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL N       L S         + +S +  DID+FK+IND FGH +GD+V
Sbjct: 287 ELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEV 346

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   + +L           R GGEEF      ++  +A  +A  +R  +  S   ++ G 
Sbjct: 347 LREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGR 406

Query: 215 S-IHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +++TIS G+ A     +    ++ RAD+ +Y AK SGRN VV
Sbjct: 407 EMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVV 450


>gi|75759399|ref|ZP_00739494.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228899313|ref|ZP_04063576.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222]
 gi|228963723|ref|ZP_04124865.1| Sensory box/GGDEF [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|74493111|gb|EAO56232.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228795959|gb|EEM43425.1| Sensory box/GGDEF [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228860344|gb|EEN04741.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222]
          Length = 569

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 6/172 (3%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHP 149
           L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  GH 
Sbjct: 137 LRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLGHM 196

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD +++ ++ +L  V G    + RLGG+EF        + + + LA  +    +     
Sbjct: 197 IGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQAP--F 254

Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  G  ++I+ S G+         + T++  +D A+Y AK+ GRN    F+D
Sbjct: 255 MLEGHEVYISASLGLCSYPQDGLDVETLLKNSDLAMYSAKEQGRNAACFFTD 306


>gi|315443124|ref|YP_004076003.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. Spyr1]
 gi|315261427|gb|ADT98168.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. Spyr1]
          Length = 822

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 13/162 (8%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N S F   L          N  ++++  D+D FK +ND+ GHP  D ++    
Sbjct: 374 DPLTGLANRSLFQDRLAHALMLRERDNRSVAVISLDLDDFKLVNDSLGHPAADSLLVSAG 433

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            ++V    +   V R+GG+EF A  L   E  + ++A  + +    ++  +  G  I + 
Sbjct: 434 RRIVDCVRSGDTVARVGGDEF-ALLLEGDEVSSDLIAQRVAEAF--TEPFVVDGHQILMH 490

Query: 220 ISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCF 258
            S G+A   H EP     T+I RAD A+Y AKKS  +RV  F
Sbjct: 491 PSIGVAVASHDEPDISAQTLIKRADMAMYTAKKSRSSRVHTF 532


>gi|308273130|emb|CBX29733.1| hypothetical protein N47_F14280 [uncultured Desulfobacterium sp.]
          Length = 296

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 7/157 (4%)

Query: 103 LSRIDCLSGLLNHSAFIS------SLGSYNEKLSIVFF-DIDYFKQINDNFGHPVGDKVI 155
           LS  D L+GL N   F++       L   N+   ++FF D+D  K IND  GH  GDK +
Sbjct: 136 LSITDQLTGLYNRRGFMTFADRQLKLAGRNKNGMMLFFADLDGLKDINDRLGHKEGDKAL 195

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +      F T   + RLGG+EFAA A+   E+   I  + L  +IE      +    
Sbjct: 196 IEAASVFRETFRTSDIIARLGGDEFAALAIDMKEENPEIFTSRLDYLIEKQNEQENRTYK 255

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           + I+I     +  +   I  +I +AD+ +Y  KK  +
Sbjct: 256 LSISIGGSFQDPENPRSIDELISQADKLMYEQKKQKK 292


>gi|288957352|ref|YP_003447693.1| diguanylate cyclase [Azospirillum sp. B510]
 gi|288909660|dbj|BAI71149.1| diguanylate cyclase [Azospirillum sp. B510]
          Length = 595

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 14/166 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHP 149
            R+ +LS  D L+GL N   F   L   +E +S        +++ D+D FK +ND  GH 
Sbjct: 412 ERLRRLSERDGLTGLFNRRTFFERL---DESISRPDSGPSALLYVDLDNFKAVNDLHGHQ 468

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  +   L          GRLGG+EF      + E +A I+A  L   +     +
Sbjct: 469 QGDAVLKAIGTLLSTGVRPGDLPGRLGGDEFVLWLGRTDEAKARIVAERLLTGM-RELAH 527

Query: 210 ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
           +S+GP   + +S GIA       E +  +  RAD A+Y AKKSG+ 
Sbjct: 528 LSAGPEKPLGLSIGIAVHSPGRGETVRELTERADAAMYHAKKSGKG 573


>gi|117619156|ref|YP_858404.1| sensory box protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117560563|gb|ABK37511.1| sensory box protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 333

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 85/165 (51%), Gaps = 19/165 (11%)

Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK- 153
           QL+  D L+G  +      ++         +++  S++  D+D FKQINDN GH  GD+ 
Sbjct: 175 QLAETDALTGAASRYRLERAIRQECERAKRFHQPFSVIAMDVDDFKQINDNHGHHAGDQT 234

Query: 154 ---VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
              ++A +   +  +      + R GG+EF      +   +  ++A+ LR+++  S++  
Sbjct: 235 LINIVALVRSHIREID----LIARWGGDEFMVVLPNTGRLDGRLVADKLRELLVQSRV-- 288

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                  IT+S G+AE    E +S ++ R D+ALY AK +G+N++
Sbjct: 289 --CQHFDITMSFGLAEYQPDEHMSQLMVRVDRALYQAKLTGKNQI 331


>gi|110597553|ref|ZP_01385839.1| GGDEF domain [Chlorobium ferrooxidans DSM 13031]
 gi|110340872|gb|EAT59346.1| GGDEF domain [Chlorobium ferrooxidans DSM 13031]
          Length = 430

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 79/172 (45%), Gaps = 9/172 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ +L   D  + L N+  F   L        S   K+S+   DID+FK+ ND  GH  G
Sbjct: 251 KLDELHIRDEKTNLYNYRHFKDRLITEVERAKSLESKVSLAMIDIDHFKRYNDAHGHIAG 310

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           D V+  L++ +           R GGEEFA     +    A  +A  LRK+I      + 
Sbjct: 311 DHVLEILAELISSQCRATDVPSRFGGEEFAVLFPKTDSDTAREIAERLRKLISIEPFPHE 370

Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              P   +T+S GIA          T+I  AD+ALY AK  GRN VV F+ +
Sbjct: 371 QHQPEGQLTVSIGIATFPGDAADWYTLINNADRALYKAKSCGRNNVVTFASM 422


>gi|86360462|ref|YP_472350.1| hypothetical protein RHE_PE00188 [Rhizobium etli CFN 42]
 gi|86284564|gb|ABC93623.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 280

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 64/125 (51%), Gaps = 1/125 (0%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +  FDID FK+IND  GH  GD V+   + ++          GR+GGEEF      +  +
Sbjct: 154 LAVFDIDNFKRINDRLGHHAGDLVLRDFAHRIHQNVRRNDCFGRVGGEEFLLVMPATGPE 213

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +A  +   +  +I  S+  +   P    T SAGIA     +  S +  RADQALY AK S
Sbjct: 214 DALAMVERMLTVIRFSRP-LPDSPDFSYTCSAGIAACVPTDSASELYRRADQALYDAKMS 272

Query: 251 GRNRV 255
           GR+RV
Sbjct: 273 GRDRV 277


>gi|323699522|ref|ZP_08111434.1| diguanylate cyclase [Desulfovibrio sp. ND132]
 gi|323459454|gb|EGB15319.1| diguanylate cyclase [Desulfovibrio desulfuricans ND132]
          Length = 348

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 8/134 (5%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM--FVGRLGGEEFAAAALG 186
           L ++  D+D+FKQ+ND +GH  GD V+  L+ ++V         F  R GGEE      G
Sbjct: 211 LCLMMIDVDHFKQVNDTYGHQAGDDVLRALA-RIVNTHAIQYDGFAARYGGEELVVVVQG 269

Query: 187 SSEQEAAILANDLRKIIENSQINISS-----GPSIHITISAGIAERCHKEPISTIIYRAD 241
                AA+ A  LR  +E     + +        ++ T+S G+A        S ++  AD
Sbjct: 270 MDLNRAAVKAEALRADVERYDFRVRTDGKLGDTPVNFTVSMGVARMKVGWTASDLVGAAD 329

Query: 242 QALYVAKKSGRNRV 255
            ALY AK +GRNRV
Sbjct: 330 AALYQAKDTGRNRV 343


>gi|323496216|ref|ZP_08101274.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
 gi|323318493|gb|EGA71446.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
          Length = 305

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 17/164 (10%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+GL+N  +F       +++  S   + +++  DID FK+IND  GH VGD+VI   
Sbjct: 144 LDELTGLMNRRSFFDAAKRFLTTRNSEQLECALLMLDIDEFKEINDTHGHLVGDEVI--- 200

Query: 159 SDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
            +Q+  V  + +  G    RLGG+EFA        ++A+ +A  +   +   ++   S P
Sbjct: 201 -NQVARVLNSHVREGDILARLGGDEFAIILPDLDAEKASSVAQRMCASVRALKLTQLSEP 259

Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + +T+S GI         I   + RAD+ALY AK++G+N+  C
Sbjct: 260 -LKVTVSIGITGIHLSDNQIKHALSRADKALYHAKETGKNKFYC 302


>gi|295107847|emb|CBL21800.1| diguanylate cyclase (GGDEF) domain [Ruminococcus obeum A2-162]
          Length = 362

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 9/163 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           N+  ++   D L+G  N  A  + +        +EK + V  D+D FK +ND +GH VGD
Sbjct: 194 NQNGEIIAYDGLTGAYNKRATEAHINKILTQMPDEKGTFVILDVDKFKDVNDRYGHAVGD 253

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INIS 211
            V+  L+      F     +GR+GG+EF      +  +E  I +  ++K+IEN + +   
Sbjct: 254 TVLHELAKTFFRHFRKDDIIGRIGGDEFVIYMRNTESKE--IASARVKKLIENVRSLPFE 311

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRN 253
                H+TIS GIA           +Y+ AD ALY AK++GR+
Sbjct: 312 EMKRNHVTISVGIAFVPEAGNCYMDLYKNADTALYEAKQNGRD 354


>gi|238923915|ref|YP_002937431.1| diguanylate cyclase [Eubacterium rectale ATCC 33656]
 gi|238875590|gb|ACR75297.1| diguanylate cyclase [Eubacterium rectale ATCC 33656]
          Length = 346

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 115/233 (49%), Gaps = 16/233 (6%)

Query: 36  SIFIATVIFIANIFLFYIG--LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
           +I +  V  IA I L+ +     P Y L+ ++++++S+ +IS  + L++  +   +L  +
Sbjct: 119 AILLCCVYAIALIILYMLDGFYAPLYKLDSVVIKSISIAMISGVVFLIITCMM-CLLHFM 177

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGH 148
                 + + ++ D L+ L N    ++ L +  E     +  +   DID FK+IND+FGH
Sbjct: 178 SSEEGAMEKQAQFDALTELPNRFYMMAKLKNLFEAEKQGEYFLAMIDIDDFKKINDSFGH 237

Query: 149 PVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
            VGD  +  L+  +V    G  +   R GGEEF         +      ++LR  I +  
Sbjct: 238 NVGDDALKMLARTIVNKARGVELSYCRWGGEEFLLLGKCVDGEVPKNFLDELRVEINSKS 297

Query: 208 INISSGPS-IHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              S G   + +TI AG  +  + +KE I+ +    D+ LYV K +G+N+VVC
Sbjct: 298 FWTSKGSGRMTVTIGAGKYKVGQDYKEWINFV----DKQLYVGKCTGKNKVVC 346


>gi|229051019|ref|ZP_04194567.1| Sensory box protein [Bacillus cereus AH676]
 gi|228722328|gb|EEL73725.1| Sensory box protein [Bacillus cereus AH676]
          Length = 735

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 355

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD ++  ++ +L     +   V R GG+EF         +++AI   +    I N
Sbjct: 356 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 415

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I  G  + IT S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 416 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 469


>gi|237808077|ref|YP_002892517.1| diguanylate cyclase with PAS/PAC and GAF sensors [Tolumonas auensis
           DSM 9187]
 gi|237500338|gb|ACQ92931.1| diguanylate cyclase with PAS/PAC and GAF sensors [Tolumonas auensis
           DSM 9187]
          Length = 543

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 21/183 (11%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQI 142
           ++ L  S  +  +L+  D L+GL     F   L         N+K L+++F D+D FK +
Sbjct: 368 VEALRQSEEKHRRLAHYDVLTGLPTRVLFSDRLKQAMRSAKRNKKNLALMFLDLDKFKPV 427

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRK 201
           ND FGH VGD+++  ++ +++        V R+GG+EF       ++ E+A  +A  +R+
Sbjct: 428 NDTFGHAVGDRLLKEVASRMLGCVRESDTVCRIGGDEFVILLHDVADAESAFNVAEKIRQ 487

Query: 202 IIENS------QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +         Q+NIS    I +    G+ ER       T+   AD A+Y AK++GR++ 
Sbjct: 488 ALNQPFKLAGHQMNISCSIGIALYPENGVDER-------TLTKNADMAMYRAKENGRDQA 540

Query: 256 VCF 258
             F
Sbjct: 541 QVF 543


>gi|56966618|pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-Digmp
 gi|56966619|pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-Digmp
 gi|158430933|pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
           And Gtp-Alpha-S
 gi|158430934|pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
           And Gtp-Alpha-S
          Length = 459

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 9/164 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL N       L S         + +S +  DID+FK+IND FGH +GD+V
Sbjct: 286 ELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEV 345

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   + +L           R GGEEF      ++  +A  +A  +R  +  S   ++ G 
Sbjct: 346 LREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGR 405

Query: 215 S-IHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +++TIS G+ A     +    ++ RAD+ +Y AK SGRN VV
Sbjct: 406 EMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVV 449


>gi|115522715|ref|YP_779626.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
 gi|115516662|gb|ABJ04646.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
          Length = 506

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 21/174 (12%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148
           +  R+ +LS  D L+GL N   F +++     +       ++++  D D FKQ ND+ GH
Sbjct: 329 AEQRLEELSVTDPLTGLTNRRKFDAAIDEEWRRAQRRGSPMALLMIDADLFKQFNDSHGH 388

Query: 149 PVGDKVI----AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GD+++      +SD    V        R GGEEFA    G +  +A  +A  +R  +E
Sbjct: 389 QAGDQMLIGIAVCISDS---VHRAGDCAARFGGEEFAVLLPGLAAPDALSVAESIRTKVE 445

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVV 256
              ++ +      +TIS G+A       +  S ++  AD+ALY AK+SGRN  V
Sbjct: 446 RWSLDQTG-----VTISVGVASLIPAPSVHWSELVEAADKALYAAKESGRNACV 494


>gi|238895576|ref|YP_002920311.1| hypothetical protein KP1_3659 [Klebsiella pneumoniae NTUH-K2044]
 gi|238547893|dbj|BAH64244.1| hypothetical protein KP1_3659 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 636

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 23/182 (12%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   R+   +  D L+G+ N  +F       ++ +  Y     ++ FD+D FK +N
Sbjct: 213 EKLQVQNRRLQYDAYHDSLTGMPNRLSFWQRLQEIVNQVRPYKGCAVVMLFDLDSFKDVN 272

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GDK++  L+ +L     T   + RLGG+EFA  +   +E+ A   AN +R+ I
Sbjct: 273 DTLGHDAGDKLLQDLASRLSFFRKTSETLYRLGGDEFAMLSYDLTEEMALERANVIREKI 332

Query: 204 E------NSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
                  ++QINI +   I I IS G       E  +  +Y+ AD ALY AKK G   V 
Sbjct: 333 SQPYQIYDAQINIDA--CIGIVISDG-------ESRTDYLYKCADLALYEAKKEGSGHVQ 383

Query: 257 CF 258
            F
Sbjct: 384 IF 385


>gi|237809101|ref|YP_002893541.1| diguanylate cyclase [Tolumonas auensis DSM 9187]
 gi|237501362|gb|ACQ93955.1| diguanylate cyclase [Tolumonas auensis DSM 9187]
          Length = 242

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 12/218 (5%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYIS--GSILKELFISYN-RISQLSRIDC 108
           YI L   Y    +L E  SL      +   L  I+  G +++   +  N  + + ++ D 
Sbjct: 17  YIQLEKQYTGHPLLAELDSLHRQYQRLERRLNKIARIGDLMQAQIMDLNSELDKRAKTDP 76

Query: 109 LSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GL N       + +  ++L        ++  D+DYFK++ND FGH  GD ++  ++  
Sbjct: 77  LTGLFNRGGLYPQMFALKKQLELNHSCFGVLLLDLDYFKEVNDQFGHLQGDHLLISVAAI 136

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L  +  T     R GGEEF       SE+    +A ++ + I +  + +      +++ S
Sbjct: 137 LQSICSTQGVCARWGGEEFLILMPDCSEKSLHTMAENIMQAIRS--VPLPGNDERYLSAS 194

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            G+      E I   I +AD A+Y AK  GR+++V +S
Sbjct: 195 IGVYFCREAEMIDDSIRKADLAMYKAKAQGRDQLVTYS 232


>gi|206578357|ref|YP_002237583.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Klebsiella pneumoniae 342]
 gi|206567415|gb|ACI09191.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Klebsiella pneumoniae 342]
          Length = 636

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 23/182 (12%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   R+   +  D L+G+ N  +F       ++ +  Y     ++ FD+D FK +N
Sbjct: 213 EKLQVQNRRLQYDAYHDSLTGMPNRLSFWQRLQEIVNQVRPYQGCAVVMLFDLDSFKDVN 272

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GDK++  L+ +L     T   + RLGG+EFA  +   +E+ A   AN +R+ I
Sbjct: 273 DTLGHDAGDKLLQDLASRLSFFRKTSETLYRLGGDEFAMLSYDLTEEMALERANVIREKI 332

Query: 204 E------NSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
                  ++QINI +   I I IS G       E  +  +Y+ AD ALY AKK G   V 
Sbjct: 333 SQPYQIYDAQINIDA--CIGIVISDG-------ESRTDYLYKCADLALYEAKKEGSGHVQ 383

Query: 257 CF 258
            F
Sbjct: 384 IF 385


>gi|120553130|ref|YP_957481.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei
           VT8]
 gi|120322979|gb|ABM17294.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei
           VT8]
          Length = 784

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 101/219 (46%), Gaps = 26/219 (11%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNR-----------ISQLSRIDCLS 110
            Y+ +ENL+  I  I +++L  ++     +E  +   R           +S  +  D L+
Sbjct: 563 RYVTLENLAGRIYDIDLTML--HLRRGERQERLVFVLRDDSERRREEERLSWEATHDALT 620

Query: 111 GLLNHSAFISSL-----GSYNEKLSIVFF--DIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            LLN  AF +SL      +  + +  V    D+D+FK +ND  GH VGD ++  L++   
Sbjct: 621 QLLNRRAFTASLLKALADAPGQPVPAVLMMIDLDHFKPVNDEGGHLVGDDLLKRLAEVFK 680

Query: 164 VVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                   V RLGG+EFA    A G +  EA  LA  +R  ++  +I    G    +T+ 
Sbjct: 681 QAVRQSDTVARLGGDEFAILLPACGMARAEA--LAESIRAKVQALKIE-HDGRQFGVTVC 737

Query: 222 AGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            G+     H      ++ RAD+  Y+AK  GRN VV  +
Sbjct: 738 IGLTPVSAHDNGPKEVMARADEGCYIAKSRGRNCVVSIA 776


>gi|330501729|ref|YP_004378598.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328916015|gb|AEB56846.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 345

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 8/170 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           +L  + +R  +   +D L+ L N +  +       ++   +  +L +++ D+D+FKQ+ND
Sbjct: 169 DLRDALSREQRKGMLDALTQLWNRAGLLHFLPLEQAAAERHQLRLGLIYCDLDHFKQVND 228

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD V+   + ++         V R GGEEF        EQE   +A  +R  I 
Sbjct: 229 THGHDGGDHVLWESARRMSAAVRPQDVVTRNGGEEFVILCQVHDEQELLQIAERIRLAIA 288

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +  + + +   +  T S G       E     + RADQALY AK+ GRNR
Sbjct: 289 SQPMQLENA-ELQQTTSLGCTLLGPGENAVDGLKRADQALYRAKRGGRNR 337


>gi|295106457|emb|CBL04000.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 618

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 9/154 (5%)

Query: 102 QLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           + S+ID L+  LN         +SL +++  L +   D+D FKQIND+ GH VGD+V+A 
Sbjct: 465 RQSQIDGLTKALNKVTVEEKIAASLAAHDRGL-LFMIDVDDFKQINDSNGHLVGDQVLAA 523

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           ++  L  VF     VGR+GG+EF A A G+ E   A + +  R+ + +    I+    + 
Sbjct: 524 IARALFDVFRCDDPVGRVGGDEFVAFARGADE---ADVVDAKRRALRDRTEFITKDLGVS 580

Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250
           +++S G+A   H  +    +   AD+A+Y  K+ 
Sbjct: 581 VSLSIGVARYPHDGKTYQELFDAADRAMYREKQE 614


>gi|254821321|ref|ZP_05226322.1| diguanylate cyclase [Mycobacterium intracellulare ATCC 13950]
          Length = 357

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 92/181 (50%), Gaps = 29/181 (16%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQI 142
           +++ L++  +R ++    D L+GLLN  A    +      G+++  L++   D+D FK++
Sbjct: 183 VVRALWVDLSRANR----DPLTGLLNRRACDREIVGRMLAGAHHMFLAVAMVDLDRFKEL 238

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD+ +  ++  L    G    VGR+GGEEF  A + +++Q    L    R++
Sbjct: 239 NDTRGHAAGDEALIEVAGTLTTACGETAIVGRVGGEEFLVADIVTADQ----LPEWGRQL 294

Query: 203 IEN-SQINISSGPSIHITISAGIAERCHKEPIS--------TIIYRADQALYVAKKSGRN 253
            +  + +N S      +T S GIA    +  +S         ++ +AD A+Y AK+ G N
Sbjct: 295 CDAIAAMNAS------VTASVGIATLALRSVVSDYAEHAFHQLVAQADTAMYEAKRCGGN 348

Query: 254 R 254
           +
Sbjct: 349 Q 349


>gi|229130597|ref|ZP_04259553.1| Sensory box protein [Bacillus cereus BDRD-Cer4]
 gi|229147888|ref|ZP_04276229.1| Sensory box protein [Bacillus cereus BDRD-ST24]
 gi|228635538|gb|EEK92027.1| Sensory box protein [Bacillus cereus BDRD-ST24]
 gi|228652936|gb|EEL08818.1| Sensory box protein [Bacillus cereus BDRD-Cer4]
          Length = 735

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 355

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD ++  ++ +L     +   V R GG+EF         +++AI   +    I N
Sbjct: 356 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 415

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I  G  + IT S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 416 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 469


>gi|254413672|ref|ZP_05027442.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179779|gb|EDX74773.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1341

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/172 (33%), Positives = 77/172 (44%), Gaps = 16/172 (9%)

Query: 100  ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
            +SQ S  D L+GL N      SL         +   + I+  DID+FK  ND FGH  GD
Sbjct: 1173 LSQQSIRDALTGLFNRRYMEESLEREIHRAQRHQRPMGIIMLDIDHFKHFNDTFGHEAGD 1232

Query: 153  KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA----AALGSSEQEAAILANDLRKIIENSQI 208
             V+  L   L           R GGEE       A+L  ++Q A  + +D++ +    QI
Sbjct: 1233 AVLRELGIFLQRSIRASDIACRYGGEELMLILPDASLADTKQRAEQIRHDVKGL----QI 1288

Query: 209  NISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                     I IS G+A    H      +I  AD+ALY AK  GR+RVV  S
Sbjct: 1289 EYHHKLLDAIAISVGVAAFAEHGSTAQELIAAADRALYQAKAQGRDRVVTAS 1340


>gi|148358169|ref|YP_001249376.1| GGDEF/EAL domain-containing sensory box protein [Legionella
           pneumophila str. Corby]
 gi|148279942|gb|ABQ54030.1| sensory box (GGDEF/EAL domain) regulatory protein [Legionella
           pneumophila str. Corby]
          Length = 972

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 4/136 (2%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           N+KL+++F D+D FKQIND+ GH +GD ++  LS++ + +      + RLGG+EF     
Sbjct: 576 NQKLAVLFLDLDEFKQINDSLGHAIGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILE 635

Query: 186 G-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQA 243
               +++A  +A   R+I   SQ  +     + ++ S GIA    H +   T++  AD A
Sbjct: 636 NIMQDKDAESIAKKCREIC--SQPFVIESQELLVSTSIGIAIYPDHGKDAKTLMRNADTA 693

Query: 244 LYVAKKSGRNRVVCFS 259
           +Y +K  G+N    F 
Sbjct: 694 MYQSKIRGKNNWTVFQ 709


>gi|88859132|ref|ZP_01133773.1| putative two-component response regulator [Pseudoalteromonas
           tunicata D2]
 gi|88819358|gb|EAR29172.1| putative two-component response regulator [Pseudoalteromonas
           tunicata D2]
          Length = 312

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 78/139 (56%), Gaps = 8/139 (5%)

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAA 184
           E++S++  DID+FK  NDN+GH  GD+ +  ++  L  +   G+  FV R GGEEFAA  
Sbjct: 176 EEMSMLLIDIDHFKLFNDNYGHRAGDECLKMVASTLKSLCQRGSD-FVARYGGEEFAAVF 234

Query: 185 LGSSEQEAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHK--EPISTIIYRA 240
                 +A   A  L+K + +  I    SS  S+ +TIS G+A         + ++I  A
Sbjct: 235 SPCHLDDAIKQAERLQKAVYDLSIPHKFSSTASV-VTISIGVASSNLNGVNSVESLIEMA 293

Query: 241 DQALYVAKKSGRNRVVCFS 259
           D+ LY+AK SGRN+V  ++
Sbjct: 294 DKGLYLAKDSGRNQVKSYT 312


>gi|332296910|ref|YP_004438832.1| diguanylate cyclase [Treponema brennaborense DSM 12168]
 gi|332180013|gb|AEE15701.1| diguanylate cyclase [Treponema brennaborense DSM 12168]
          Length = 381

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 111/238 (46%), Gaps = 20/238 (8%)

Query: 23  SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL 82
           SP ++ I  +I  SI I   +F   +          Y L  + +ENL ++   I I+   
Sbjct: 153 SPVSYAILLAILLSIDILETVFFQTL--------DKYTLAALCIENLFILYCGIFIN--- 201

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYF 139
            Y S   + E+ I+   I Q   +D L+ L N  A   +I++  S     ++   DID F
Sbjct: 202 TYFSRMKITEIKITAELIRQRD-MDSLTQLKNRRAAERYINTFTSNAGLHALFILDIDNF 260

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND FGH  GD+++  L+  L+ +F     V RLGG+EF       ++   A  A D 
Sbjct: 261 KGVNDTFGHNTGDELLKQLAADLLALFRPEDCVSRLGGDEFLIFMPCVADPNDAREAAD- 319

Query: 200 RKIIENSQINISS-GPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            +II N    ++  G ++ ++ S GIA            +  RAD ALY +K+ G+ R
Sbjct: 320 -RIIRNFPPAVTEGGKTVAVSCSIGIAFSHDDRSRFYEDLYTRADAALYKSKQYGKCR 376


>gi|323496706|ref|ZP_08101754.1| hypothetical protein VISI1226_11162 [Vibrio sinaloensis DSM 21326]
 gi|323318240|gb|EGA71203.1| hypothetical protein VISI1226_11162 [Vibrio sinaloensis DSM 21326]
          Length = 493

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 81/167 (48%), Gaps = 10/167 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           ++  L+  D L+ L N   F  +L +  EK  L I  FDID FKQ ND  GH VGD+ + 
Sbjct: 322 KLQYLAMHDPLTSLANRRGFEHALLAMEEKRFLGIGVFDIDDFKQFNDLHGHEVGDQALR 381

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPS 215
            ++  +         V R GGEEF  A  G S+Q  A +    ++ I      + S+G  
Sbjct: 382 HIAVLMTDSTRQCDLVARFGGEEFVVAISGESDQLIATIFERTQQQISLQGYRLPSTGED 441

Query: 216 IHITISAGIA---ERCHKE----PISTIIYRADQALYVAKKSGRNRV 255
             +T+SAG       C++      I+  I +AD  LY AK  G+NRV
Sbjct: 442 CALTMSAGAVIYRSHCYESYRHLWITQGIRQADGLLYQAKAQGKNRV 488


>gi|317473300|ref|ZP_07932595.1| GGDEF domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316899136|gb|EFV21155.1| GGDEF domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 483

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 13/162 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           R  + +  D L+G+ N       +      +++    ++F D+D FKQIND+ GH  GDK
Sbjct: 301 RWKEAADNDALTGINNRKGLEEKILKIMKENWDSSGVLLFLDLDDFKQINDSKGHAFGDK 360

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  +++++     +   VGR+GG+EF     G   ++AA+      K  E  +  I  G
Sbjct: 361 VLRTVAEKIKSCVRSTDVVGRIGGDEFIVFLNGIGGKDAAL------KKAEEIEQKIQDG 414

Query: 214 -PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
                +T+S GIA+          +I RADQALY +K  G+N
Sbjct: 415 FHGYPVTVSIGIAQFPEDGAEFDVLIKRADQALYYSKNKGKN 456


>gi|303238430|ref|ZP_07324965.1| diguanylate cyclase/phosphodiesterase [Acetivibrio cellulolyticus
           CD2]
 gi|302594134|gb|EFL63847.1| diguanylate cyclase/phosphodiesterase [Acetivibrio cellulolyticus
           CD2]
          Length = 893

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 20/185 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEK---LSIVFFDIDYFKQIND 144
           EL  S   +  L+  D L+ L N   FI     +L S  +K   L+I++ D++ FKQ+ND
Sbjct: 445 ELKKSREELKHLAYYDALTDLPNRLYFIEYIKETLESNKDKYLILAIMYIDLNRFKQVND 504

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA--------ILA 196
             GH VGD ++  ++ +   +     F+ R+GG+EF      + + +AA        +LA
Sbjct: 505 TLGHEVGDMLLKEVAKRFKSISNNDTFIARIGGDEFVVILKNADKLKAAETASFINKVLA 564

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +     N  +++ +  SI I++    +   H     ++I  AD ++Y AKK G N   
Sbjct: 565 DKISVTFNNKGMDLFTSGSIGISLYPLDSNDIH-----SVIKNADMSMYTAKKEGGNTYR 619

Query: 257 CFSDI 261
            + +I
Sbjct: 620 FYEEI 624


>gi|228903827|ref|ZP_04067942.1| Sensory box protein [Bacillus thuringiensis IBL 4222]
 gi|228855736|gb|EEN00281.1| Sensory box protein [Bacillus thuringiensis IBL 4222]
          Length = 735

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVMFLDLDRFKKINDR 355

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD ++  ++++L     +   V R GG+EF         +++AI   +    I N
Sbjct: 356 LGHDVGDLLLIEVANRLRGCLRSKDVVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 415

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I  G  + IT S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 416 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 469


>gi|170692754|ref|ZP_02883916.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M]
 gi|170142410|gb|EDT10576.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M]
          Length = 692

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 87/165 (52%), Gaps = 11/165 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPV 150
            +I +L+ +D L+GL N +     +      +  ++   +I+F D+D FK IND+ GH  
Sbjct: 253 GQIVRLATLDTLTGLPNRATLTERIERAIYAARRQRSLFAILFMDLDGFKTINDSLGHSA 312

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQIN 209
           GD+V++  + +L+V       V RLGG+EF   +   +S  +AA LA  + + + +    
Sbjct: 313 GDQVLSAFAQRLLVCVRAGDTVARLGGDEFVVLSENLASRDDAATLAEGVLERMRHDTWT 372

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
            S    + +  S GIA      + + T++  AD A+Y AK++GR+
Sbjct: 373 DSQ--PLQVMPSIGIALFPEDGDTVDTLLKHADAAMYEAKRAGRS 415


>gi|32476363|ref|NP_869357.1| response regulatory protein [Rhodopirellula baltica SH 1]
 gi|32446908|emb|CAD78814.1| probable response regulatory protein [Rhodopirellula baltica SH 1]
          Length = 308

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 10/162 (6%)

Query: 100 ISQLSRIDCLSGLLNHS----AFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGD 152
           + + S ID ++G+ N       F + L  +++      +   DID FK IND+ GH +GD
Sbjct: 134 LQEASHIDSMTGIANRRRCDIEFQTRLELFSQSGVPFCVAIVDIDCFKSINDSGGHDLGD 193

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            VI  +  +L  +      V R+GGEEFA     +S  E   L    RK IE    +   
Sbjct: 194 HVICKVGQELREISRPGDLVARIGGEEFAIIFTNTSIDELGTLQQQHRKAIERLDFHPE- 252

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +I +T+S G       +   +   RAD ALY AKK+GRN+
Sbjct: 253 --NIRVTVSVGGTCVLASDDSRSAFRRADLALYAAKKNGRNQ 292


>gi|95930722|ref|ZP_01313455.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95133202|gb|EAT14868.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 637

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 80/172 (46%), Gaps = 11/172 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
           N + + S  D ++GL N        G          + + ++  DID+FKQ+ND +GH  
Sbjct: 460 NTLRESSLRDPMTGLFNRRFLQDQAGHLIAGTLRRKKNIGLLMCDIDFFKQVNDQYGHDA 519

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+   S  +         V R GGEEF          +A  +A  +R  IE+    +
Sbjct: 520 GDQVLKETSAIIQKSVRESDVVVRFGGEEFLVILTDIEAGDAMSVAEKIRSNIEDKVFMV 579

Query: 211 SSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             GP  I  TIS G++E     E     I  AD ALY AK++GRNR + F +
Sbjct: 580 --GPEKIRKTISLGVSEYPGDSEGFWQSIKYADVALYRAKETGRNRALRFEE 629


>gi|330878877|gb|EGH13026.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 763

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 108/225 (48%), Gaps = 40/225 (17%)

Query: 67  ENLSLVIISITISLLLGYISG------------------SILKELFISYNRISQLSRIDC 108
           + L L I +IT+ ++ G IS                   ++L +L  +   + Q++  D 
Sbjct: 235 QQLGLTIAAITLLIIAGSISAAMADKKLQGKEHDLQRVNTLLSQLDQARVSLQQVAHYDP 294

Query: 109 LSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ L+N   F       L  +      L+++F DID+FK+IND+ GH  GD+++  ++++
Sbjct: 295 LTNLINRRGFNQIFAEKLLEHTHSKGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAER 354

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITI 220
           +         V R GG+EF         +EA  LA+   ++++  +  I+ +G  + +T 
Sbjct: 355 IRSATRVQDVVARFGGDEFCILLSIPDYEEARHLAH---RVMDKMKETIALAGRRMVMTT 411

Query: 221 SAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           S GIA        C +     ++  AD ALY +K +GRNRV  FS
Sbjct: 412 SIGIAVFPRDGSTCDE-----LLKHADLALYQSKGNGRNRVNFFS 451


>gi|288934500|ref|YP_003438559.1| diguanylate cyclase/phosphodiesterase [Klebsiella variicola At-22]
 gi|288889209|gb|ADC57527.1| diguanylate cyclase/phosphodiesterase [Klebsiella variicola At-22]
          Length = 636

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 23/182 (12%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   R+   +  D L+G+ N  +F       ++ +  Y     ++ FD+D FK +N
Sbjct: 213 EKLQVQNRRLQYDAYHDSLTGMPNRLSFWQRLQEIVNQVRPYQGCAVVMLFDLDSFKDVN 272

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GDK++  L+ +L     T   + RLGG+EFA  +   +E+ A   AN +R+ I
Sbjct: 273 DTLGHDAGDKLLQDLASRLSFFRKTSETLYRLGGDEFAMLSYDLTEEMALERANVIREKI 332

Query: 204 E------NSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
                  ++QINI +   I I IS G       E  +  +Y+ AD ALY AKK G   V 
Sbjct: 333 SQPYQIYDAQINIDA--CIGIVISDG-------ESRTDYLYKCADLALYEAKKEGSGHVQ 383

Query: 257 CF 258
            F
Sbjct: 384 IF 385


>gi|260598122|ref|YP_003210693.1| RNase II stability modulator [Cronobacter turicensis z3032]
 gi|260217299|emb|CBA31265.1| Protein gmr [Cronobacter turicensis z3032]
          Length = 684

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 18/184 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLN----HSAFISSLGSYNE-KLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N    H     ++    E ++ IV+ D+D FK
Sbjct: 239 SGTDITEERRAQERLRVLANTDAITGLPNRNAIHEMISDAIAKRGETQVGIVYLDLDNFK 298

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + RLGG+EF   A  +S  +AA+ A   R
Sbjct: 299 KVNDAYGHMFGDQLLQAVSLAILSCLEKDQVLARLGGDEFIVMATDTS--QAALEAMSSR 356

Query: 201 KIIENSQ------INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            I           I + +G S+ I ++       H +   ++I  AD A+Y AK++GR +
Sbjct: 357 IITRLKHPFRIGLIEVYTGCSLGIALAPQ-----HGDDRESVIRNADTAMYTAKENGRGK 411

Query: 255 VVCF 258
              F
Sbjct: 412 FCVF 415


>gi|256371938|ref|YP_003109762.1| diguanylate cyclase/phosphodiesterase [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008522|gb|ACU54089.1| diguanylate cyclase/phosphodiesterase [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 626

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 16/163 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+S L+  D L+GL N  AF  +L           E+++++  D+D FK +ND +GH  G
Sbjct: 117 RLSMLATRDPLTGLPNRRAFADALQRSWARAKRTGERVTVIALDLDDFKHVNDTYGHRRG 176

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA---ILANDLRKIIENSQI 208
           D+V+A L+ +L         V R GG+EF    L  + +EAA   +LA  L + ++    
Sbjct: 177 DEVMAELAHRLAKAVRATDVVARTGGDEF-GLVLDPTGEEAAVEPVLAR-LERELQRPLA 234

Query: 209 NISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKS 250
            +  G    +  SAGIA           ++  ADQALYVAK +
Sbjct: 235 TLDGG---RLLASAGIASSDALTMEADALLDAADQALYVAKHA 274


>gi|209546601|ref|YP_002278519.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537845|gb|ACI57779.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 532

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 5/157 (3%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           SR D L+GL N          + +      +++  DID+FK+IND F H +GD V+A ++
Sbjct: 373 SRTDPLTGLGNRRELQLRCRDWADTGVTHAALMLCDIDHFKRINDVFSHSIGDVVLARVA 432

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           D L           R+GGEEF     G+   +AA  A  LR  +++   +    P++ + 
Sbjct: 433 DLLGDARAEGGLAIRMGGEEFLLLLPGTRAADAAAAAERLRLRVQDHDWS-EVAPTLEVA 491

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S G+A+    E +   +  AD  LY AK +GRNR V
Sbjct: 492 CSIGLADWSLAESLEAALQVADANLYAAKNAGRNRCV 528


>gi|124515840|gb|EAY57349.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptospirillum rubarum]
          Length = 1144

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/189 (30%), Positives = 89/189 (47%), Gaps = 23/189 (12%)

Query: 90  LKELFISYNRISQLSRI----------DCLSGLLN--HSAFISSLGSYNEKLS-----IV 132
           ++ L ++   IS+  R+          D L+GL N  H   +     +  +LS     + 
Sbjct: 562 IRHLILTETDISEKKRLEDILKRQAWSDGLTGLPNRTHLEILMDEAIHRSRLSGKGVAVC 621

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           FFD+D FK +ND FGH  GD+++  +S +L     +   V RLGG+EF    L       
Sbjct: 622 FFDLDGFKPVNDRFGHAFGDRILVEVSHRLQNSVRSGDTVARLGGDEF--VLLLEEIDRN 679

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKK 249
           A +   L +I+E S       P   ++++A I    + E   P   ++  AD ALY AK+
Sbjct: 680 ATIHQLLARILE-SIARPFEAPGTPLSLTASIGVTIYPEDLSPSDVLLRHADHALYQAKE 738

Query: 250 SGRNRVVCF 258
            GRNR V F
Sbjct: 739 DGRNRFVLF 747


>gi|157371308|ref|YP_001479297.1| diguanylate cyclase [Serratia proteamaculans 568]
 gi|157323072|gb|ABV42169.1| diguanylate cyclase [Serratia proteamaculans 568]
          Length = 516

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 14/178 (7%)

Query: 91  KELFISYNR-ISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQI 142
           ++   S NR + +L+ +D L+GL N   F  +L       S N + ++++  DIDYFKQ 
Sbjct: 337 RDQLTSINRTLEELALLDGLTGLANRRQFDIALKNELMRASRNYRSVALLMLDIDYFKQY 396

Query: 143 NDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD+ +  +   L  +   +   + R GGEE A     +  Q A I A  + +
Sbjct: 397 NDIYGHVAGDQCLQQIGQMLKGMASRSNDIMARYGGEEMAIILPDTDAQGALIFAERVIE 456

Query: 202 IIENSQINISSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNRV 255
            +   +I     P   ITIS GI  +     +  P+S  I +AD ALY AK  G+NR+
Sbjct: 457 AVRELKIPHDGNPHGVITISIGIYAKVPHMYNDTPMS-FINQADSALYQAKAQGKNRI 513


>gi|28379449|ref|NP_786341.1| diguanylate cyclase/phosphodiesterase domain-containing protein
           [Lactobacillus plantarum WCFS1]
 gi|28272288|emb|CAD65201.1| protein containing diguanylate cyclase/phosphodiesterase domain 1
           (GGDEF) [Lactobacillus plantarum WCFS1]
          Length = 378

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 12/162 (7%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ + N +A+       ++S      +L+++ FDID+FKQ+ND +GH  GDK++  ++
Sbjct: 217 DALTKIENFAAYKTAINYQVTSSRKNGSQLTMLMFDIDHFKQVNDTYGHLAGDKILQHVA 276

Query: 160 DQLVVVF--GTPMF-VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
               +VF    P   + R GGEEF          EA  +A  L   I +  + ++    I
Sbjct: 277 QVATIVFHANNPQISLYRTGGEEFNVIFPNYDLTEALAVAEQLFAAINHIAVPVND-HQI 335

Query: 217 HITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVC 257
            ++IS G++E    +   T  Y R D  LY +KK GR ++  
Sbjct: 336 QLSISIGLSELAADDQSPTAFYQRVDANLYHSKKHGRMQITA 377


>gi|312879136|ref|ZP_07738936.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM
           12260]
 gi|310782427|gb|EFQ22825.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM
           12260]
          Length = 662

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 19/177 (10%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
           +  R+  L+R D L+ L N + F   L            +L+++F D+D FK +ND FGH
Sbjct: 475 TAERMEHLARHDPLTDLPNRALFFDRLDVALALSKRNGTRLALMFVDLDRFKPVNDTFGH 534

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENS- 206
            VGD ++   + ++         VGR+GG+EF         Q+A  ++A  LR+ +    
Sbjct: 535 AVGDVLLREAAGRMRACIRGSDTVGRIGGDEFVVLLPAVETQKAPLVVAEKLRRALARPF 594

Query: 207 QINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +I+   G  I I+ S GIA    + C  +PI  +   AD A+Y+AK+ G + V  F 
Sbjct: 595 EID---GRRIGISCSIGIAIAPDDGC--DPIE-LAKNADMAMYLAKQQGGDAVRFFG 645


>gi|291619783|ref|YP_003522525.1| YaiC [Pantoea ananatis LMG 20103]
 gi|291154813|gb|ADD79397.1| YaiC [Pantoea ananatis LMG 20103]
          Length = 354

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 2/123 (1%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D+FK +ND FGH  GD ++A +S  L    G      R GG+E       S++ 
Sbjct: 227 LILIDVDHFKNVNDTFGHEAGDFLLAEISGLLRDSVGMKDIPARFGGDELGVIIRDSNDV 286

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +   LA  L++ I   Q+ + +  +   ++S GIA     + I   + RAD+ALY  K+S
Sbjct: 287 DIISLAESLQRNI--GQLRLPASVTFRCSVSIGIASADKADSIHEWLRRADKALYEVKRS 344

Query: 251 GRN 253
           GRN
Sbjct: 345 GRN 347


>gi|238757825|ref|ZP_04619008.1| hypothetical protein yaldo0001_35840 [Yersinia aldovae ATCC 35236]
 gi|238704068|gb|EEP96602.1| hypothetical protein yaldo0001_35840 [Yersinia aldovae ATCC 35236]
          Length = 572

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 13/176 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           +L  +  R+   +R D L+ L N   F   L          N  L+I+  DIDYFK  ND
Sbjct: 389 KLVKANRRLEIQARTDSLTKLPNRREFKKVLAHEFMRAKRSNSPLAILMIDIDYFKNFND 448

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  L          V R GGEEFAA    + +  A ++A  + + I
Sbjct: 449 CYGHISGDACLRLVARALRKSLKRSTDIVARYGGEEFAAILPDTDQNGANLVAEHILQSI 508

Query: 204 ENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNR 254
               I         +TIS G+        C     + ++  ADQALY +KK+GRN+
Sbjct: 509 RAMGIKHGDSKFRKVTISLGVTVYQSRSHCTVTDQADLVQAADQALYYSKKNGRNQ 564


>gi|51244053|ref|YP_063937.1| hypothetical protein DP0201 [Desulfotalea psychrophila LSv54]
 gi|50875090|emb|CAG34930.1| hypothetical protein DP0201 [Desulfotalea psychrophila LSv54]
          Length = 363

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 11/159 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGD 152
           + + +R D L+ LLN  AF S L     +         +++FD+D FK +ND+ GH  GD
Sbjct: 199 LKEQARHDGLTKLLNQHAFYSELRRELARAQRRGYCTVLIYFDLDKFKALNDSEGHRRGD 258

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  +++ +           R GG+EF      S+ +EA  +   L K +E S +    
Sbjct: 259 EVLVMVANSMKASLRDNELCARYGGDEFCIILPESTLKEAEKVCQRLCKELEKSLV---- 314

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           G  +  ++   I++  +     T++  AD+A+Y AKK G
Sbjct: 315 GTGVSCSMGIAISDTANSHDADTLVKEADKAMYEAKKVG 353


>gi|109896955|ref|YP_660210.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
 gi|109699236|gb|ABG39156.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
          Length = 678

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 94/188 (50%), Gaps = 13/188 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFF 134
           L  ++ ++ +++     +I+QLS +D L+ L+N  +F  +L          N +L+++F 
Sbjct: 231 LNAVNSTLEEQVSKRTEKIAQLSYLDPLTQLMNRKSFTQTLSKLTARASQSNSELALLFI 290

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK+IND  GH +GD V+  ++ + +  F     +GR  G+EF  A   S  Q A  
Sbjct: 291 DLDGFKKINDTMGHQMGDSVLQEVTKR-IGAFADQNKLGRWNGDEFLVALPYSDAQTAQA 349

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGR 252
           +A+ +  I   SQ+   +  S+H+  + GIA  C  H    + +I  AD  +   K S  
Sbjct: 350 IASAI--ITSISQVITVNNNSVHLGATVGIA-MCPEHSTEAAELIQFADLVMCEQKASTN 406

Query: 253 NRVVCFSD 260
                FS+
Sbjct: 407 RTPALFSN 414


>gi|262043773|ref|ZP_06016876.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038897|gb|EEW40065.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 510

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 21/175 (12%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           K+  +SY R +    ID L+G  N  AF S + +    ++  ++   DID FK IND +G
Sbjct: 346 KQRELSYVRQAT---IDALTGCKNRRAFDSDIAAQMNDHQPFALALVDIDNFKSINDTWG 402

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVG--RLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           H  GD V+  ++ + + V   P+ +   R GGEEFA           A   ++ R ++E 
Sbjct: 403 HLNGDIVLRNVAREGLQVL-QPLEISLYRYGGEEFAVVF-------PAEHIDNARTLLET 454

Query: 206 SQINISSGP----SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            ++N+         + +T SA + E  + EP+  ++   D+ALY AK+ G+NR++
Sbjct: 455 WRVNVERRTWREDGLTVTFSADLGE-WNMEPLDKLVVSVDEALYKAKQQGKNRIL 508


>gi|229105940|ref|ZP_04236564.1| Sensory box protein [Bacillus cereus Rock3-28]
 gi|228677514|gb|EEL31767.1| Sensory box protein [Bacillus cereus Rock3-28]
          Length = 881

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 11/176 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 442 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKTILNTAQTSANDVAVMFLDLDRFKKINDR 501

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIE 204
            GH VGD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  I+ 
Sbjct: 502 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPDMYSEKSAAFIAEQILTIL- 560

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           N    I     + +T S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 561 NKPFFIKD-EELSVTPSIGIAMYPDYGNDVTELMKNADMAMYRAKANGKNRFVFFS 615


>gi|167635770|ref|ZP_02394080.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442]
 gi|254742267|ref|ZP_05199954.1| sensory box/GGDEF family protein [Bacillus anthracis str. Kruger B]
 gi|167528879|gb|EDR91636.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442]
          Length = 735

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144
           L+    ++  L+  D L+GL N   F   L         S N+ ++++F D+D FK+IND
Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 354

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
             GH +GD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  I+
Sbjct: 355 RLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 414

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            N    I     + IT S GIA    C  + ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 415 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTELMKNADMAMYRAKANGKNRFVFFS 469


>gi|120612174|ref|YP_971852.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acidovorax citrulli AAC00-1]
 gi|120590638|gb|ABM34078.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax citrulli AAC00-1]
          Length = 872

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 90/174 (51%), Gaps = 18/174 (10%)

Query: 99  RISQLSRIDCLSGLLNHS---AFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGD 152
           R+  LS  D L+GL N      F+++L   +   + L+++  D+D FK +ND  GH +GD
Sbjct: 431 RVRHLSLHDTLTGLPNRRRLHQFLATLLESDGPAQPLALLCLDLDRFKPVNDALGHALGD 490

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE------AAILANDLRKIIENS 206
           +V+  ++ +L  + G      RLGG+EF     G+ + +      AA++A        + 
Sbjct: 491 RVLQEVARRLQALLGPQDIAARLGGDEFVLVLAGAQDPDAIGRRCAAVVAALCEPFAFDG 550

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           QI +  G SI + + A +  R  +E    ++ + D ALY AK +GRN   C++D
Sbjct: 551 QI-VCIGTSIGV-VQAPLHARTAQE----LLRKGDIALYDAKAAGRNTWRCYTD 598


>gi|87122911|ref|ZP_01078777.1| sensory box/GGDEF family protein [Marinomonas sp. MED121]
 gi|86161811|gb|EAQ63110.1| sensory box/GGDEF family protein [Marinomonas sp. MED121]
          Length = 806

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 103/207 (49%), Gaps = 28/207 (13%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           ++Y+L E++ ++I++  IS           KE   + ++I+ L+  D L+ L N    + 
Sbjct: 335 IKYVLQESIEVLILARDIS---------ARKE---AEDKINHLAYFDSLTHLPNRHWIME 382

Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L S  E       K +++F D+D FK IND+ GH VGD ++  +++   V+    + V 
Sbjct: 383 RLESSMEISRERKVKGAVLFLDLDRFKNINDSLGHDVGDLLLQVVANDFKVLAEGDICVA 442

Query: 174 RLGGEEFA------AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE- 226
           RLGG+EF          L    ++ A  A  + +    S+   S    +HI++S GI   
Sbjct: 443 RLGGDEFVFLFPFLEGDLDYINEKVAFFAQQIVQSFNKSKFVGSH--EMHISVSIGITLF 500

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRN 253
              +E +  ++ +AD ALY AK +GRN
Sbjct: 501 DGFEENVGVLLKQADTALYKAKDAGRN 527


>gi|330965690|gb|EGH65950.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 332

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 2/129 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+ +  DID FK +ND +GH  GD V+  +++            GR+GGEEFAA   G +
Sbjct: 203 LAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCA 262

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVA 247
            + A  +A  L++ I+      ++G +  IT S G+     ++     +Y RAD A+Y A
Sbjct: 263 PEMAMQIAERLQREIQRQNFQ-ANGSTFSITASQGLTNLGPEDQGLEALYGRADAAMYQA 321

Query: 248 KKSGRNRVV 256
           K+ G+N++V
Sbjct: 322 KRQGKNQIV 330


>gi|325275267|ref|ZP_08141224.1| diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51]
 gi|324099608|gb|EGB97497.1| diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51]
          Length = 754

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 92/181 (50%), Gaps = 12/181 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           +L EL  +   + Q +  D L+ L+N   F       ++   +   +L+++F DID+FK+
Sbjct: 275 LLSELDQARASLQQAAHYDALTNLVNRRGFNQLFAERLAEHLASESRLAVMFLDIDHFKR 334

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD+++  +++ +     +   V R GG+EF      +S  EA  LA   ++
Sbjct: 335 INDSLGHHAGDELLKVIANHIKAATRSQDLVARFGGDEFCVVTSLNSRDEARHLA---QR 391

Query: 202 IIENSQINIS-SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I++  +  I   G  + +T S G++           ++  AD ALY +K +GRN +  F+
Sbjct: 392 IMQRMKDPIELCGRRMVMTTSIGVSIFPDDGSSAEELLKHADLALYQSKDNGRNSLNFFN 451

Query: 260 D 260
           D
Sbjct: 452 D 452


>gi|296105527|ref|YP_003617227.1| sensory box (GGDEF/EAL domain) regulatory protein [Legionella
           pneumophila 2300/99 Alcoy]
 gi|295647428|gb|ADG23275.1| sensory box (GGDEF/EAL domain) regulatory protein [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 976

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 4/136 (2%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           N+KL+++F D+D FKQIND+ GH +GD ++  LS++ + +      + RLGG+EF     
Sbjct: 580 NQKLAVLFLDLDEFKQINDSLGHAIGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILE 639

Query: 186 G-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQA 243
               +++A  +A   R+I   SQ  +     + ++ S GIA    H +   T++  AD A
Sbjct: 640 NIMQDKDAESIAKKCREIC--SQPFVIESQELLVSTSIGIAIYPDHGKDAKTLMRNADTA 697

Query: 244 LYVAKKSGRNRVVCFS 259
           +Y +K  G+N    F 
Sbjct: 698 MYQSKIRGKNNWTVFQ 713


>gi|294339503|emb|CAZ87862.1| conserved hypothetical protein; putative GGDEF domain [Thiomonas
           sp. 3As]
          Length = 368

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 115/256 (44%), Gaps = 29/256 (11%)

Query: 28  MIYFSIFFSIFIATVIFIANI-----FLFYIGLTPFYGLEYILVENL--------SLVII 74
           +++F++  S+ + TV     +      L+ I L   +G   +    L        SL+I+
Sbjct: 100 LMHFNLLPSVVLVTVTTFDKLSSGMRRLWLISLPGLFGAAVLTALILRPPVQLESSLLIV 159

Query: 75  SITISLLLGY-ISGSI-----LKELFISYNRISQLSRIDCLSGLL--NH-----SAFISS 121
           + T+ LL+ + +S SI     ++ +      + QL R D  +GL   +H      A +  
Sbjct: 160 ACTLPLLVVHTLSSSIGSYRLIRTVSRQNKLLEQLRRTDAQTGLFARDHWQQQADAALQL 219

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +  +   ++  D+D+FKQ+ND +GH  GD  I  +   +          GR GG+EFA
Sbjct: 220 FQAVGQPACLLMIDVDHFKQVNDTYGHTAGDDAIRAVGQLIRDCICEEDCAGRYGGDEFA 279

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRA 240
                + + +A  +A  +R   E   + +   P++ ++ S G+A        +   +  A
Sbjct: 280 VLCQNTGQPDALGIAERIR--TELLTLRLPHHPNVRLSSSIGVAAAAPAFSNLQAWMQAA 337

Query: 241 DQALYVAKKSGRNRVV 256
           D ALY AK  GRN+V 
Sbjct: 338 DAALYSAKHQGRNQVA 353


>gi|291280230|ref|YP_003497065.1| hypothetical protein DEFDS_1854 [Deferribacter desulfuricans SSM1]
 gi|290754932|dbj|BAI81309.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 361

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 7/135 (5%)

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV---VFGTPMFVGRLGGEEFAAA 183
           + +SI+  DID FK+ NDN+GH  GD V+  ++  L++   V      V R GGEEF   
Sbjct: 229 KPISILMIDIDDFKKYNDNYGHIAGDNVLKKIA--LILQENVKRNNDVVARFGGEEFIIM 286

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRAD 241
              + E  A ++AN++ K I  + I         +T+S G +    K+ +  + +I  AD
Sbjct: 287 LYDTDEYGAKMIANNILKNINKTNIKHDYATFGRVTVSIGCSTIIPKDNLNPNDLIIIAD 346

Query: 242 QALYVAKKSGRNRVV 256
           +ALY AKK G+N+V+
Sbjct: 347 EALYKAKKEGKNKVI 361


>gi|165871333|ref|ZP_02215982.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488]
 gi|167640372|ref|ZP_02398636.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193]
 gi|170688171|ref|ZP_02879382.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465]
 gi|170708029|ref|ZP_02898477.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389]
 gi|177651942|ref|ZP_02934525.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174]
 gi|190569113|ref|ZP_03022012.1| sensory box/GGDEF family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227818111|ref|YP_002818120.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684]
 gi|229601817|ref|YP_002869563.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248]
 gi|164713000|gb|EDR18528.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488]
 gi|167511592|gb|EDR86974.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193]
 gi|170127002|gb|EDS95881.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389]
 gi|170667864|gb|EDT18616.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465]
 gi|172082646|gb|EDT67710.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174]
 gi|190559781|gb|EDV13767.1| sensory box/GGDEF family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227006433|gb|ACP16176.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684]
 gi|229266225|gb|ACQ47862.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248]
          Length = 735

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144
           L+    ++  L+  D L+GL N   F   L         S N+ ++++F D+D FK+IND
Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 354

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
             GH +GD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  I+
Sbjct: 355 RLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 414

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            N    I     + IT S GIA    C  + ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 415 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTELMKNADMAMYRAKANGKNRFVFFS 469


>gi|160893867|ref|ZP_02074650.1| hypothetical protein CLOL250_01421 [Clostridium sp. L2-50]
 gi|156864519|gb|EDO57950.1| hypothetical protein CLOL250_01421 [Clostridium sp. L2-50]
          Length = 1273

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 94/185 (50%), Gaps = 22/185 (11%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFF-DIDYFKQI 142
           SI +E   S   I +  R D L+G+ NHS F+S     L  ++E L  ++  D+D FK +
Sbjct: 387 SIHEEKLQSQELILRAER-DSLTGVYNHSTFVSKVSRFLAEFDETLCALYMIDLDDFKLV 445

Query: 143 NDNFGHPVGDKVI---AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILAND 198
           ND  GH  GD ++   A + + +   +G   F GRLGG+EF+       +++ A ++A  
Sbjct: 446 NDALGHYAGDDLLCDTAVVLESVANTYGG--FSGRLGGDEFSMFIPDVVDEDTAYMVAKT 503

Query: 199 LRKIIENSQINISSGPSIHI---TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           L K I   +       SI I   TIS  +          ++ Y+ADQALY +K+ G++R 
Sbjct: 504 LNKGIRAIKCKAEHSASIGIAVDTISKSLK-------FDSLYYKADQALYYSKRQGKDRC 556

Query: 256 VCFSD 260
           + F +
Sbjct: 557 MLFCE 561


>gi|152981019|ref|YP_001354994.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille]
 gi|151281096|gb|ABR89506.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille]
          Length = 563

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 97/195 (49%), Gaps = 17/195 (8%)

Query: 80  LLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           L++G+ ISG    E      R+  ++  D L+GL N S     L          +   ++
Sbjct: 112 LVVGHDISGQQATE-----ERLRHMATHDELTGLPNRSLLADRLRMAIAQSRRTDRGFAV 166

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           V  D+D FK++ND  GHPVGD ++   + +L         + R+GG+EF A   G+ ++ 
Sbjct: 167 VALDLDGFKKVNDALGHPVGDALLRVAAARLRETLRDVDTLARVGGDEFVAVLHGAVDE- 225

Query: 192 AAILANDLRKIIENSQINIS-SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKK 249
              + N  R++I   Q+     G +++++ S G+A    H E    ++  AD A+Y AK+
Sbjct: 226 -VEIHNVARRMIAAIQLPFEIDGNALYVSTSIGVAIYPAHGETDVKLLAHADSAMYRAKE 284

Query: 250 SGRNRVVCFSDIENN 264
           +G+ R + ++ +  N
Sbjct: 285 TGKARCIIYNHLSFN 299


>gi|149910458|ref|ZP_01899099.1| sensory box protein [Moritella sp. PE36]
 gi|149806517|gb|EDM66488.1| sensory box protein [Moritella sp. PE36]
          Length = 627

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 16/178 (8%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISS------LGSYNEKL-SIVFFDIDYFKQINDNFGH 148
           S     +L+  D L+GL N      +      L   N+ + +++F D+D+FK IND+ GH
Sbjct: 187 SQEEFHRLAFFDSLTGLANRRLLNQTIETQYQLAKTNQVVGALLFIDLDFFKAINDSLGH 246

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA------AAALGSSEQEAAILANDLRKI 202
            VGD ++  ++++L  +     F+ RLGG+EF       +     +EQ A +LA  L + 
Sbjct: 247 AVGDGILVEVAERLKEIPRPEDFIARLGGDEFVILLPDLSENPMHAEQHANLLAEQLIER 306

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
           I  SQ  +  G +++I  S G+     K+     ++ +AD A+Y AK +GR +V  F 
Sbjct: 307 I--SQPYLYKGQALYIGASIGVTLFPSKDQHADDLLKQADTAMYQAKSNGRKKVYFFD 362


>gi|153802390|ref|ZP_01956976.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|124122054|gb|EAY40797.1| GGDEF family protein [Vibrio cholerae MZO-3]
          Length = 429

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 8/132 (6%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+IND +GH  GD+++  ++  L         + R GGEEF       S +EA  
Sbjct: 299 DIDHFKKINDQYGHITGDRILQAVASCLRKNVRDGDTIIRFGGEEFLLLFQAHSNKEAWH 358

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + + LR+ +++      +  SI  T   G         + T I RAD ALY AK++GRN+
Sbjct: 359 MLDRLRQRVKDDHSLYGTTISIGFTFIDG--------SLPTAISRADTALYQAKEAGRNQ 410

Query: 255 VVCFSDIENNTC 266
           V+  S+ EN++ 
Sbjct: 411 VIADSEKENDSA 422


>gi|28867535|ref|NP_790154.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213971644|ref|ZP_03399752.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
           T1]
 gi|301385613|ref|ZP_07234031.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302061519|ref|ZP_07253060.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
           K40]
 gi|302134621|ref|ZP_07260611.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28850770|gb|AAO53849.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213923600|gb|EEB57187.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
           T1]
 gi|331014833|gb|EGH94889.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 332

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 2/129 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+ +  DID FK +ND +GH  GD V+  +++            GR+GGEEFAA   G +
Sbjct: 203 LAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCA 262

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVA 247
            + A  +A  L++ I+      ++G +  IT S G+     ++     +Y RAD A+Y A
Sbjct: 263 PEMAMQIAERLQREIQRQNFQ-ANGSTFSITASQGLTNLGPEDQGLEALYGRADAAMYQA 321

Query: 248 KKSGRNRVV 256
           K+ G+N++V
Sbjct: 322 KRQGKNQIV 330


>gi|89092726|ref|ZP_01165679.1| Intracellular signaling protein (PAS,GAF,GGDEF domains)
           [Oceanospirillum sp. MED92]
 gi|89083238|gb|EAR62457.1| Intracellular signaling protein (PAS,GAF,GGDEF domains)
           [Oceanospirillum sp. MED92]
          Length = 354

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 102/207 (49%), Gaps = 28/207 (13%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAF---- 118
           I +++L L+   I + L+  +      ++L I  NR + + +  D L+ + N  +     
Sbjct: 146 IDIDSLQLMASWIEVELIRRH-----QEKLLIELNRRLEEKASTDSLTKIPNRRSLYKHL 200

Query: 119 ---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
              ++ +   + + ++V  DID+FK+IND +GH  GDK +  ++  L        FVGR 
Sbjct: 201 RKEVNRVNRNHSRAALVMIDIDHFKKINDKYGHQTGDKALIAVARVLQNALRDYDFVGRY 260

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEP-- 232
           GGEEF    L   E E   + N   +++++ ++I++   P   +TIS+GI       P  
Sbjct: 261 GGEEF---MLWLPEVEPGQIDNICARLMKDIAEISLLKEP---MTISSGICAFSCATPYI 314

Query: 233 ------ISTIIYRADQALYVAKKSGRN 253
                 I  +  +ADQ LY AK +GRN
Sbjct: 315 GSVDHMIDRLTAKADQQLYEAKSAGRN 341


>gi|23011596|ref|ZP_00051909.1| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 527

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 85/175 (48%), Gaps = 11/175 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           S + E   +  RI  L+  D L+ L N   F       I++   + ++L+I+F D+D FK
Sbjct: 227 SDITERKKTEERIKNLAYFDVLTALPNRRLFTDRLQIAIANAHRHGQQLAIMFLDLDLFK 286

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDL 199
           +IND+ GH VGD+V+   + ++         V RLGG+EF          E AA LA   
Sbjct: 287 RINDSLGHGVGDQVLVETAARISHCVREGDTVARLGGDEFTVLLPEIDHMEDAAKLAE-- 344

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           R I    Q  +     +++T S GIA      + +  +I  AD A+Y AK  GRN
Sbjct: 345 RVIAHVKQPFVVDDNELYVTTSIGIAVYPEDGDSVEALIKNADTAMYRAKDLGRN 399


>gi|326388698|ref|ZP_08210291.1| diguanylate cyclase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206949|gb|EGD57773.1| diguanylate cyclase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 590

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 17/177 (9%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQINDNFGHP 149
           ++  R+ +L+  D L+GL N   F+ +L S  +  +     +   DID FK +ND+ GH 
Sbjct: 150 VAEERLWKLANTDPLTGLPNRRRFLENLQSLTDTGAENGIILGLMDIDNFKGLNDSLGHT 209

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILANDLRKIIE 204
           VGD V+  +++++         V RLGG+EFA      A+   +E+  A + + L ++I 
Sbjct: 210 VGDHVLQHVANRIRETLEAEDIVARLGGDEFALILRHCASNTEAEERIARIEDALSELIP 269

Query: 205 NSQINISSGPSIHIT-ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + +     S+ +T    G A        + ++  AD ALY AK +GRNR   F+D
Sbjct: 270 LGRDSRRVSASLGLTRFPEGGAT------ANELMKHADIALYKAKANGRNRTEFFTD 320


>gi|307822553|ref|ZP_07652784.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
 gi|307736157|gb|EFO07003.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
          Length = 325

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 90/202 (44%), Gaps = 18/202 (8%)

Query: 68  NLSLVIISITISLLLGYISGSILKE-LFISYNRI-SQLSRIDCLSGLLNHSAF------- 118
           N S  +I IT S      S SI +E +  S++ I  + +  D L+ + N   F       
Sbjct: 120 NESCCLIQITDS------STSIKREKMLRSHSEILKKEATTDSLTDICNRRFFDAHYEMA 173

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGG 177
           ++        LSI   DID+FK  ND +GH  GD  I  ++  L          V R GG
Sbjct: 174 VAEAKRQKHPLSIFMVDIDFFKSYNDYYGHIAGDNAIKQVASALKSQLSRATDIVARYGG 233

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTI 236
           EEF        ++ A   A  LR  + N +  +I S P   ITIS G+      E    +
Sbjct: 234 EEFVLVMPHLPQKVAEQFAEKLRSAVFNLAMPHIKSRPFNQITISVGLCTGI-PENDDNL 292

Query: 237 IYRADQALYVAKKSGRNRVVCF 258
           + +AD ALY AK  GRNR +C 
Sbjct: 293 LNKADAALYQAKLKGRNRCICL 314


>gi|228942495|ref|ZP_04105031.1| Sensory box protein [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228975429|ref|ZP_04135984.1| Sensory box protein [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228982062|ref|ZP_04142354.1| Sensory box protein [Bacillus thuringiensis Bt407]
 gi|228777600|gb|EEM25875.1| Sensory box protein [Bacillus thuringiensis Bt407]
 gi|228784223|gb|EEM32247.1| Sensory box protein [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228817178|gb|EEM63267.1| Sensory box protein [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 735

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 355

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD ++  ++ +L     +   V R GG+EF         +++AI   +    I N
Sbjct: 356 LGHDVGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 415

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I  G  + IT S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 416 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 469


>gi|218674737|ref|ZP_03524406.1| putative sensory box/GGDEF family protein [Rhizobium etli GR56]
          Length = 482

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 12/164 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFF--DIDYFKQINDNFGHPVGDKV 154
           +LS  D L+G+ N  A    L        +E    V F  D+D+FK+ ND +GH  GD+ 
Sbjct: 218 ELSNTDYLTGISNRRALDLRLDECWAAWKDEGRDFVVFLIDVDFFKRFNDRYGHQEGDRC 277

Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  +++ L  VV  +   +GR GGEEF       +   A  LA  +R  +E   I     
Sbjct: 278 LTVVANALKAVVESSGGMIGRYGGEEFIVVMPAETPSIAMSLAEKIRMEVEFLAIAHDER 337

Query: 214 P--SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
           P  S  +T+S G+A       E +  I+  AD ALY AK SGRN
Sbjct: 338 PDDSPIVTVSIGVAFTRDDVGEKVERIVREADLALYNAKASGRN 381


>gi|196036537|ref|ZP_03103932.1| sensory box/GGDEF family protein [Bacillus cereus W]
 gi|228949069|ref|ZP_04111341.1| Sensory box protein [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|195990870|gb|EDX54843.1| sensory box/GGDEF family protein [Bacillus cereus W]
 gi|228810642|gb|EEM56991.1| Sensory box protein [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 735

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144
           L+    ++  L+  D L+GL N   F   L         S N+ ++++F D+D FK+IND
Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 354

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
             GH +GD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  I+
Sbjct: 355 RLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 414

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            N    I     + IT S GIA    C  + ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 415 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTELMKNADMAMYRAKANGKNRFVFFS 469


>gi|169794389|ref|YP_001712182.1| putative GGDEF family protein [Acinetobacter baumannii AYE]
 gi|169147316|emb|CAM85177.1| putative GGDEF family protein [Acinetobacter baumannii AYE]
          Length = 593

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 9/164 (5%)

Query: 99  RISQLSRIDCLSGLLNH---SAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152
           ++  ++  D L+G+ N    S ++  + SY +K S   ++  DID FK +ND +GH VGD
Sbjct: 430 QLKNIANTDPLTGVSNRLALSEYLKIVESYPQKFSQTCLMIIDIDRFKHVNDQYGHIVGD 489

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
           +VI  ++DQL         + R GG+EF          +A +LA  +R  I   +I++S 
Sbjct: 490 QVIRRIADQLKANVRASDLIVRYGGDEFLILLEQVQFLDARLLAEKIRIAISLEEIDLSG 549

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   +H+++S G A          ++  AD++L  AK  GRN V
Sbjct: 550 TKEKLHVSVSIGFA--IGATSWMELLENADRSLLRAKARGRNVV 591


>gi|157373582|ref|YP_001472182.1| sensory box protein [Shewanella sediminis HAW-EB3]
 gi|157315956|gb|ABV35054.1| sensory box protein [Shewanella sediminis HAW-EB3]
          Length = 870

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 9/169 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            ++ Q +  D ++ LLN  AF   L  ++   + ++I +FD++ FK IND+ GH  GD +
Sbjct: 426 RQLRQKANFDSITSLLNRRAFEERLEKFSHDAQSIAICYFDLEQFKLINDSCGHSAGDTM 485

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI--SS 212
           +A ++  +         + RLGG+EF  A    +  E A L   +++I+ +  + +   +
Sbjct: 486 LAMVAKAMQSCLSKDEMLARLGGDEFGLAIRDHNASEVAQL---VKRIVSSVSMQVLRDN 542

Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           G    + +SAG+A  R        +I  AD A   AK+ G N+V  + D
Sbjct: 543 GCHYKVGVSAGVAIARAPYISPKELIKDADVACIAAKRKGSNQVHFYDD 591


>gi|71736866|ref|YP_272801.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71557419|gb|AAZ36630.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 712

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 18/187 (9%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           ++++  +  S++++L   Y ++ + +  D L+GLLN      ++          ++ L +
Sbjct: 254 AMVMTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVEGMLLRKEQTDKYLVV 310

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF      L   E
Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247
           Q A I    + ++    Q++   G  I +  S GIA    C    +  ++  AD A+Y A
Sbjct: 371 QAAKIAEKLIERVSGRRQVD---GIDITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 426

Query: 248 KKSGRNR 254
           K++GR +
Sbjct: 427 KRAGRQQ 433


>gi|65317327|ref|ZP_00390286.1| COG5001: Predicted signal transduction protein containing a
           membrane domain, an EAL and a GGDEF domain [Bacillus
           anthracis str. A2012]
          Length = 735

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144
           L+    ++  L+  D L+GL N   F   L         S N+ ++++F D+D FK+IND
Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 354

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
             GH +GD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  I+
Sbjct: 355 RLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 414

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            N    I     + IT S GIA    C  + ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 415 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTELMKNADMAMYRAKANGKNRFVFFS 469


>gi|326317912|ref|YP_004235584.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374748|gb|ADX47017.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 442

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 81/159 (50%), Gaps = 13/159 (8%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N SAF       +S + +    ++++F D+D FK+IND  GH VGD+V+
Sbjct: 277 LANHDSLTGLHNRSAFHNRFERSLSEVRTRGGAVALLFIDLDGFKKINDGHGHKVGDEVL 336

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
            +++ +L         V RLGG+EF    L +  QE        R I   S+     G  
Sbjct: 337 RYVARRLAHAVRGNDTVARLGGDEF-LVMLDTDVQEDLAGQIGSRIISAISEPMDVGGHD 395

Query: 216 IHITISAGIAERCHKE---PISTIIYRADQALYVAKKSG 251
           + +  S G+A   H      I  ++ RADQA+Y AK+SG
Sbjct: 396 VRVGASIGVA--MHPPLAGDIELLMTRADQAMYAAKRSG 432


>gi|196045448|ref|ZP_03112679.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108]
 gi|218906527|ref|YP_002454361.1| sensory box/GGDEF family protein [Bacillus cereus AH820]
 gi|225867330|ref|YP_002752708.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102]
 gi|228917957|ref|ZP_04081493.1| Sensory box protein [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228936633|ref|ZP_04099427.1| Sensory box protein [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|229124852|ref|ZP_04254030.1| Sensory box protein [Bacillus cereus 95/8201]
 gi|229187574|ref|ZP_04314714.1| Sensory box protein [Bacillus cereus BGSC 6E1]
 gi|196023655|gb|EDX62331.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108]
 gi|218536626|gb|ACK89024.1| sensory box/GGDEF family protein [Bacillus cereus AH820]
 gi|225788718|gb|ACO28935.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102]
 gi|228595941|gb|EEK53621.1| Sensory box protein [Bacillus cereus BGSC 6E1]
 gi|228658643|gb|EEL14305.1| Sensory box protein [Bacillus cereus 95/8201]
 gi|228823068|gb|EEM68906.1| Sensory box protein [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228841754|gb|EEM86865.1| Sensory box protein [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 735

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144
           L+    ++  L+  D L+GL N   F   L         S N+ ++++F D+D FK+IND
Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 354

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
             GH +GD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  I+
Sbjct: 355 RLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 414

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            N    I     + IT S GIA    C  + ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 415 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTELMKNADMAMYRAKANGKNRFVFFS 469


>gi|149909689|ref|ZP_01898341.1| putative orphan protein; putative conserved domain [Moritella sp.
           PE36]
 gi|149807203|gb|EDM67158.1| putative orphan protein; putative conserved domain [Moritella sp.
           PE36]
          Length = 548

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 19/169 (11%)

Query: 106 IDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           +D  +GL N   F+  L      G  N  L I+  D+D FK IND  GH VGD+VIA ++
Sbjct: 108 LDNCTGLANRFKFLEMLDSKMAEGQGNTALCIL--DLDDFKDINDTLGHNVGDQVIAIIA 165

Query: 160 DQLVVVFGTPMF-------VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
            ++ +  G P+        + R+GG+EFA   +  S+ E   +A  L ++++N +  I  
Sbjct: 166 QRIKLSLGYPLQPNMYKTDIFRIGGDEFAILIMDFSDAED--IAPILNQLLKNIRRKIEL 223

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           SG SI I +S G++    H     +++ +AD A+Y  K+SG++ V  F 
Sbjct: 224 SGESIVIGVSIGVSISPEHGTCSDSLLKKADMAMYKVKESGKHGVAFFK 272


>gi|160880931|ref|YP_001559899.1| diguanylate cyclase with GAF sensor [Clostridium phytofermentans
           ISDg]
 gi|160429597|gb|ABX43160.1| diguanylate cyclase with GAF sensor [Clostridium phytofermentans
           ISDg]
          Length = 573

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 10/174 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
           Y+++ Q++  D L+G+ N       L  Y       N+ LS+   DID FK+IND +GH 
Sbjct: 386 YSKMQQMAIRDSLTGIYNRGQLNVILEQYTKRASEQNKSLSVALLDIDLFKKINDTYGHL 445

Query: 150 VGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            GD+VI  ++ +L  V         R GGEEF          +   +   L++ I+ + +
Sbjct: 446 FGDEVIKMVASKLQEVANCFHGIAARYGGEEFVIVLPDIGILDFYHIVTSLKETIDTTTL 505

Query: 209 NISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +    I++ +S GI+           ++ RAD A+Y +K++GRN +   +DI
Sbjct: 506 YFNE-DEINVKVSVGISSYPETSLSCQQLLNRADGAMYYSKRNGRNSITVDNDI 558


>gi|78355914|ref|YP_387363.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78218319|gb|ABB37668.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 312

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 1/133 (0%)

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           S+       +++F DID FK +ND +GH VGD V+  ++  +         V R GGEEF
Sbjct: 161 SMNDVGSPYAVIFVDIDLFKDVNDTWGHIVGDNVLKMVAKTIESSLRPLDAVCRWGGEEF 220

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                G+++     L   LR +++ S I +     I +T S G A     E   ++  RA
Sbjct: 221 IICVPGATKDGVMQLMERLRMLVQESWI-MHEQHKIAVTASFGAAICSQGESSESVAQRA 279

Query: 241 DQALYVAKKSGRN 253
           D+ LY++K +GRN
Sbjct: 280 DEQLYLSKNTGRN 292


>gi|309790253|ref|ZP_07684823.1| response regulator [Oscillochloris trichoides DG6]
 gi|308227717|gb|EFO81375.1| response regulator [Oscillochloris trichoides DG6]
          Length = 328

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 72/133 (54%), Gaps = 7/133 (5%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
             ++R D L+GLLN  + +  LG+       Y  +LSI+  DID+FKQ+ND +GH +GD+
Sbjct: 162 EHIARTDDLTGLLNRRSIMLILGNEADRVRRYQSQLSILMIDIDHFKQVNDRYGHLMGDQ 221

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+   +  L         +GR GGEEF      +SE  A  LA  L + I + +   +  
Sbjct: 222 VLRECAGLLRRSIRAIDHLGRYGGEEFLCILPMTSEGAAVDLAERLNRDIAHLRFFANEL 281

Query: 214 PSIHITISAGIAE 226
            S ++TIS G++E
Sbjct: 282 VSFNVTISVGVSE 294


>gi|290508701|ref|ZP_06548072.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Klebsiella sp. 1_1_55]
 gi|289778095|gb|EFD86092.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Klebsiella sp. 1_1_55]
          Length = 614

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 23/182 (12%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   R+   +  D L+G+ N  +F       ++ +  Y     ++ FD+D FK +N
Sbjct: 191 EKLQVQNRRLQYDAYHDSLTGMPNRLSFWQRLQEIVNQVRPYQGCAVVMLFDLDSFKDVN 250

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GDK++  L+ +L     T   + RLGG+EFA  +   +E+ A   AN +R+ I
Sbjct: 251 DTLGHDAGDKLLQDLASRLSFFRKTSETLYRLGGDEFAMLSYDLTEEMALERANVIREKI 310

Query: 204 E------NSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
                  ++QINI +   I I IS G       E  +  +Y+ AD ALY AKK G   V 
Sbjct: 311 SQPYQIYDAQINIDA--CIGIVISDG-------ESRTDYLYKCADLALYEAKKEGSGHVQ 361

Query: 257 CF 258
            F
Sbjct: 362 IF 363


>gi|254422490|ref|ZP_05036208.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196189979|gb|EDX84943.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 871

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 58/172 (33%), Positives = 77/172 (44%), Gaps = 20/172 (11%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           + ID L+GL N      SL             L     D+D+FKQIND +GH VGD V+ 
Sbjct: 696 TEIDSLTGLYNRRKSTQSLNRLLRLARRQRQPLCFALIDLDHFKQINDQYGHLVGDYVLR 755

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI------ 210
                L   F +   V R GGEEF     G    E       L ++ +N  ++I      
Sbjct: 756 RFGICLRSTFRSEDVVARWGGEEFVIGLYGVDALEGTERLRQLVQVWQNETLDICKDLFL 815

Query: 211 ----SSGPSIHI--TISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
                +  + HI  T SAGIA      + + T+   AD+AL+ AKK GRNRV
Sbjct: 816 ESSTGTAQTSHIIATFSAGIAVFPQAADSLQTLYIAADRALHDAKKMGRNRV 867


>gi|163853267|ref|YP_001641310.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163664872|gb|ABY32239.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 700

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 91/178 (51%), Gaps = 14/178 (7%)

Query: 99  RISQLSRIDCLSGLLNHS-------AFISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPV 150
           RI  ++R D L+ L N +        ++++L +  E  L+++  D+D FK +ND+FGH V
Sbjct: 260 RIIHMARHDGLTDLPNRTHLREVGAEWLAALRTAAEAPLAVLCLDLDRFKPVNDSFGHAV 319

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD ++  ++D+L     +   V RLGG+EFA  +       AA LA    ++IE      
Sbjct: 320 GDALLRAVADRLRGHVRSHDVVARLGGDEFAVLSRVEDAAAAATLAE---RLIETVAAPY 376

Query: 211 S-SGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           +  G ++ I +SAGI  AE      I  ++  AD ALY AK  GR  V  F    + T
Sbjct: 377 TLDGITVEIGMSAGIALAEGDVPHDIERLLKEADLALYEAKTEGRGTVRLFEPQMDET 434


>gi|116251447|ref|YP_767285.1| transmembrane GGDEF sensory box protein [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115256095|emb|CAK07176.1| putative transmembrane GGDEF sensory box protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 709

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 99/203 (48%), Gaps = 32/203 (15%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRI----DCLSGLLNHSAFI----- 119
           LSL +I +   LL+G      L++L       +Q +R     D LSGLLN    +     
Sbjct: 265 LSLFLIGV---LLVGASEARRLRQL-------AQTARFEASHDSLSGLLNRQGLLRLLED 314

Query: 120 -SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
             S    + +L +V  D+D FK +ND +GH VGD +I  +S+ L+      +   RLGG+
Sbjct: 315 LESPDPSSPRLYLV--DLDGFKAVNDAWGHAVGDDLIRIVSNALMTSHPEVLAAARLGGD 372

Query: 179 EFAAAALGSS---EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           EFA   +G +   E E AILA       E  +I+   G +I +  S G A R        
Sbjct: 373 EFALVHVGGAAREEIEEAILA----LFAEPFKID---GRTIEVGASIGAAARDGDISPLE 425

Query: 236 IIYRADQALYVAKKSGRNRVVCF 258
           ++ RAD ALY AK +G+ + V +
Sbjct: 426 LLRRADMALYRAKANGKGQAVEY 448


>gi|315444736|ref|YP_004077615.1| diguanylate cyclase (GGDEF) domain-containing protein
           [Mycobacterium sp. Spyr1]
 gi|315263039|gb|ADT99780.1| diguanylate cyclase (GGDEF) domain-containing protein
           [Mycobacterium sp. Spyr1]
          Length = 358

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 11/159 (6%)

Query: 104 SRIDCLSGLLNHSAFISS----LGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           S  D L+GL N   F  S    L    ++    L++   D+D FKQIND  GH  GD+++
Sbjct: 194 SHTDPLTGLRNRRGFYRSVRRLLRVAPDRDLNFLTVAMIDLDRFKQINDTRGHATGDRLL 253

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +S  L         VGR+GGEEF  A + + + +A  LA  LR  I ++   I++   
Sbjct: 254 VSISGCLCHCARGEAVVGRVGGEEFLIAEV-TRDDDAEALAERLRLAIASTSWGITASVG 312

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +      G A+   ++ +  +I  AD A+Y AK+SG N+
Sbjct: 313 VACRRLNGDAD--TRDLLGDLIEAADSAMYEAKRSGGNQ 349


>gi|291525370|emb|CBK90957.1| diguanylate cyclase (GGDEF) domain [Eubacterium rectale DSM 17629]
          Length = 346

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 115/233 (49%), Gaps = 16/233 (6%)

Query: 36  SIFIATVIFIANIFLFYIG--LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
           +I +  V  IA I L+ +     P Y L+ ++++++S+ +IS  + L++  +   +L  +
Sbjct: 119 AILLCCVYAIALIILYMLDGFYAPLYKLDSVVIKSISIAMISGVVFLIITCMM-CLLHFM 177

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGH 148
                 + + ++ D L+ L N    ++ L +  E     +  +   DID FK+IND+FGH
Sbjct: 178 SSEEGAMEKQAQFDALTELPNRFYMMAKLKNLFEAEKQGEYFLAMIDIDDFKKINDSFGH 237

Query: 149 PVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
            VGD  +  L+  +V    G  +   R GGEEF         +      ++LR  I +  
Sbjct: 238 NVGDDALKMLARTIVNKARGVELSYCRWGGEEFLLLGKCVDGEVLKNFLDELRVEINSKS 297

Query: 208 INISSGPS-IHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              S G   + +TI AG  +  + +KE I+ +    D+ LYV K +G+N+VVC
Sbjct: 298 FWTSKGSGRMTVTIGAGKYKVGQDYKEWINFV----DKQLYVGKCTGKNKVVC 346


>gi|255100032|ref|ZP_05329009.1| putative signaling protein [Clostridium difficile QCD-63q42]
          Length = 1181

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++ + +  D L+ L N  A  S +  Y       K +++  DID FK INDN GH  GD 
Sbjct: 704 KLKERAEKDPLTDLYNKKASQSLIEEYITLDKKRKGALMIIDIDDFKGINDNLGHLYGDA 763

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISS 212
           V++ +++ L+ +F     VGR+GG+EF       SE    I  A +L K  E S   +  
Sbjct: 764 VLSEIANDLINLFRATDIVGRIGGDEFIVFIKDISETRDIINKAEELVKTFERSF--LGK 821

Query: 213 GPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259
           G +  I++S GIA+          ++R AD ALY AK  G+N   C++
Sbjct: 822 GRNYKISLSVGIAKFPQDGMDYMTLFRNADMALYSAKGKGKN---CYT 866


>gi|254513944|ref|ZP_05126005.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [gamma proteobacterium NOR5-3]
 gi|219676187|gb|EED32552.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [gamma proteobacterium NOR5-3]
          Length = 643

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 93/178 (52%), Gaps = 29/178 (16%)

Query: 100 ISQLSRIDCLSGL---------LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +  L+  D L+GL         LNH+     L + +  L+++F D+D+FK IND+ GH +
Sbjct: 213 LEHLAHHDALTGLPNRLYLIDKLNHALLSPDLNTAS--LAVLFLDLDHFKDINDSLGHSL 270

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIE----- 204
           GD+V+  +S +L         + RLGG+EF     G  S   A  +A  + K+ +     
Sbjct: 271 GDEVLRAVSRRLSACVRKADVIARLGGDEFTIVLQGIGSSIIAVEVAQKILKVFQEPLTL 330

Query: 205 -NSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFS 259
            +  +N+S+  SI I++S G       + ++T  ++  AD A+Y AK+SGRN  + +S
Sbjct: 331 SDRTLNVST--SIGISVSPG-------DGVTTEELLRNADAAMYRAKRSGRNTFMHYS 379


>gi|189913164|ref|YP_001965052.1| GGDEF domain receiver component of a two- component response
           regulator [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|189913501|ref|YP_001964729.1| Putative GGDEF/response regulator receiver domain protein
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|167777840|gb|ABZ96139.1| GGDEF domain receiver component of a two- component response
           regulator [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167781569|gb|ABZ99865.1| Putative GGDEF/response regulator receiver domain protein
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 298

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 9/170 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           ++++ + +  D ++GL N       +         ++  LS+   DID FK IND +GH 
Sbjct: 129 HDQLRETAIRDVMTGLYNRRYMEERIEQEFQRCKRHDSLLSMAMIDIDKFKNINDTYGHE 188

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD+VI  L+ +L   F     + R GGEEF      +   +A  + + +R+ +   ++ 
Sbjct: 189 IGDQVIKQLAHELKTSFRKSDIISRFGGEEFVILFPETGVVDATRILDRVRENVSKLEMK 248

Query: 210 ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +    H T S G+A  +    +    ++  AD+ LY AK SGRN+++ 
Sbjct: 249 SDTDQIFHFTFSGGVAGGDLSDIQSNQELLKIADKNLYEAKSSGRNQIIS 298


>gi|330891059|gb|EGH23720.1| GGDEF domain-containing protein [Pseudomonas syringae pv. mori str.
           301020]
          Length = 463

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 84/178 (47%), Gaps = 17/178 (9%)

Query: 89  ILKELFISYNRI-------SQLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFDID 137
           +++ L  SYN +         L+R D LSGLLN    H   ++ L   + + ++   D+D
Sbjct: 12  LMQRLQDSYNDLLKSQALSDSLARHDPLSGLLNRRVFHEQLVARLEQPSSQTAVFLIDLD 71

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAIL 195
            FK IND+ GH VGD  I  +++ L     G    V RLGG+EF  A  G   Q E A L
Sbjct: 72  KFKLINDSHGHAVGDAAICAVAESLREATAGWQASVARLGGDEFGLAVSGDFTQVELATL 131

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252
           A  +   I  S  ++   P + ++ + GIA           ++  AD A+Y  K  GR
Sbjct: 132 AESVLAKIAASSADL---PRLALSATLGIAISPLDGSDADILLQHADSAMYRGKNGGR 186


>gi|294142449|ref|YP_003558427.1| GGDEF domain-containing protein [Shewanella violacea DSS12]
 gi|293328918|dbj|BAJ03649.1| GGDEF domain protein [Shewanella violacea DSS12]
          Length = 387

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 16/168 (9%)

Query: 107 DCLSGLLNHSAFISSL------GSYNEKLSIVF-FDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N  A   +L         N+K++++   D+D FK IND  GH  GD V+  + 
Sbjct: 207 DGLTHLRNRRAGSRALIELFDRAEANDKIAVLMNIDLDNFKIINDTNGHEAGDMVLIEIG 266

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSE--QEAAI-----LANDLRKIIENSQINISS 212
            +++ VF       R GG+EF       S   +E ++     LA++LR ++ N  + +SS
Sbjct: 267 RRMMAVFRNDDLCIRWGGDEFVVGCYFDSSRFEERSLPAIEKLASELRCVL-NQDVKLSS 325

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           G  I I  S GIA    H + + +++  AD A+YV+K+ GRN+   F 
Sbjct: 326 GEDIKIGASIGIAMYPQHGDNLQSVLKAADNAMYVSKQKGRNQYSIFD 373


>gi|160941915|ref|ZP_02089242.1| hypothetical protein CLOBOL_06811 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435412|gb|EDP13179.1| hypothetical protein CLOBOL_06811 [Clostridium bolteae ATCC
           BAA-613]
          Length = 838

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 6/170 (3%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVG 151
           Y +  + +R D L+GLLN   F  +L    EK     L++V F++D FK  N  +G+  G
Sbjct: 440 YEKAYEEARTDELTGLLNRKYFCQTLEENYEKCRRTSLALVIFNVDDFKLYNQLYGNHEG 499

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DK +  ++  +    G   + GR  G+EFA          A  LA ++ + I+N  ++ +
Sbjct: 500 DKALVHIARIIQGTVGDNGYCGRYSGKEFAVILPDYDIYSAQNLAENISRQIQNMNLDCT 559

Query: 212 SGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                 +T+S GI A       ++ +I  AD A+Y  K+SG+N +  +SD
Sbjct: 560 DTYLKPLTVSCGICAAPYAAASMNELISNADCAVYHVKRSGKNGIRVYSD 609


>gi|170725163|ref|YP_001759189.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169810510|gb|ACA85094.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
          Length = 538

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 82/182 (45%), Gaps = 33/182 (18%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSI--VFFDIDYFKQINDNFGHPV 150
            ++  LS+ D L+ + N   F  SL +       EK SI  +  DID+FK  ND +GH  
Sbjct: 354 QKLEALSQTDSLTKISNRRCFDESLQACWQHAIREKSSIGLIMIDIDHFKLYNDTYGHLA 413

Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII---ENS 206
           GD+ +  ++  L          V R GGEEF             +L    R  I   +  
Sbjct: 414 GDQCLREVASALNQTLNRKTDLVARYGGEEF------------VVLLPHTRDCISPAKRC 461

Query: 207 QINI--------SSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256
           QINI        SS  S ++T+S G+   C  +   +      AD+ALY AKKSGRNRV 
Sbjct: 462 QINIEQLALPHESSPTSEYVTVSVGVTSICPDKCSDMQAFTAEADRALYQAKKSGRNRVQ 521

Query: 257 CF 258
            F
Sbjct: 522 VF 523


>gi|327396683|dbj|BAK14104.1| diguanylate cyclase/phosphodiesterase [Pantoea ananatis AJ13355]
          Length = 552

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 13/170 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R + L+  D L+GLLN    +  L +    +E  +++  DID FK +ND  GH  GD ++
Sbjct: 269 RANHLALHDPLTGLLNRRGLMPELETLLDGDEPFAVMVSDIDRFKSVNDVLGHAAGDTLL 328

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN----SQINI 210
             +S +L+ V      + R GG+EF A   G SS ++A+  A+ L  +++         +
Sbjct: 329 IEVSARLLSVLRPGDILARTGGDEFVAVLPGISSAEDASETASRLTMVLKEPFMLKGRKV 388

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +SG S  + +  G A         +++  AD ALY AK +GR   V F+D
Sbjct: 389 TSGCSFGVCLFPGYARDAE-----SMLSAADIALYAAKSAGRKGWVIFTD 433


>gi|327396635|dbj|BAK14056.1| phytochrome-like protein Cph2 [Pantoea ananatis AJ13355]
          Length = 480

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 89/179 (49%), Gaps = 21/179 (11%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF----ISSL---GSYNEKLSIVFFDIDYFKQIND 144
           EL  + + +  L+  D L+GL N   F    I SL    S    +S++ FDIDYFK+ ND
Sbjct: 302 ELTEANHSLENLANGDGLTGLANRRYFDHFLIKSLLHGRSSGGPVSLILFDIDYFKRYND 361

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM--FVGRLGGEEFAAAALGSSEQEAAILAND---- 198
            +GH  GD  +  +  +L+  F         R GGEEFA     +   +A  +A+     
Sbjct: 362 TYGHVAGDACLQQVG-RLLKTFAQRRIDIAARYGGEEFAIVLADTCAADALKIASSVVEA 420

Query: 199 LRKI-IENSQINISSGPSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRN 253
           +RK+ I +S   + +G    +T+SAG+A        E    +I RAD+ALY AK  GRN
Sbjct: 421 VRKLAIPHSSTGLETGC---VTLSAGVATTVAGEGPERAERLIKRADEALYRAKHEGRN 476


>gi|289624438|ref|ZP_06457392.1| GGDEF [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289646357|ref|ZP_06477700.1| GGDEF [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298485584|ref|ZP_07003665.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298159900|gb|EFI00940.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|330870120|gb|EGH04829.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 397

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 93/210 (44%), Gaps = 21/210 (10%)

Query: 68  NLSLVIISITISLLLGYI--SGSILKELFISYNRISQL-----SRIDCLSGLLNH----- 115
           N  L + ++ + L+  Y     S +  LF    R+ Q+     +R D L+ L N      
Sbjct: 191 NAVLFVSTVALLLMASYFLERASRMSYLFALRGRLLQVQLMEFARTDGLTRLFNRRYQDE 250

Query: 116 --SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
             ++   S       ++I+  DID+FK  NDN+GHP GD  +  L  ++         V 
Sbjct: 251 VMTSVWESARKTPADVAIILLDIDHFKSYNDNYGHPQGDTCLKLLCQKIQQSAHENGAVA 310

Query: 174 -RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232
            R GGEE      G + Q   +       +      +   G S  +T+S G+A  C   P
Sbjct: 311 FRFGGEEVLVLMNGDAGQAREMADALQAAVAALKLPHPVLGESAFVTVSLGVA--CATAP 368

Query: 233 IST---IIYRADQALYVAKKSGRNRVVCFS 259
            +T   +I  AD ALY AK++GRN  VCF+
Sbjct: 369 QTTADHLISAADNALYAAKRAGRN-CVCFA 397


>gi|284050567|ref|ZP_06380777.1| response regulator receiver modulated diguanylate cyclase
           [Arthrospira platensis str. Paraca]
          Length = 336

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 15/172 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           +  L  +D L+ + N   F   L    E+       +S++  DIDYFK  ND +GH  GD
Sbjct: 162 LEMLVNLDQLTQISNRRRFDDFLQVEWERHYRVRLPISLIMLDIDYFKYYNDYYGHQAGD 221

Query: 153 ---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI- 208
              K +A + +Q   V  +   V R GGEEFA     +  + A  +A  +R  I++ Q+ 
Sbjct: 222 DCLKNVAQIINQ--NVDQSNALVARYGGEEFAVVLPETDLETAEAIAEKIRLAIQDKQLP 279

Query: 209 NISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I S  S +++IS G++ +   +   I T+I  AD ALY AK+ GRNRV  F
Sbjct: 280 HIQSKVSPYVSISLGVSSQIPTYLTSIKTLIAAADAALYEAKQLGRNRVFSF 331


>gi|229181597|ref|ZP_04308922.1| Sensory box protein [Bacillus cereus 172560W]
 gi|228601793|gb|EEK59289.1| Sensory box protein [Bacillus cereus 172560W]
          Length = 735

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 355

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD ++  ++ +L     +   V R GG+EF         +++AI   +    I N
Sbjct: 356 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 415

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I  G  + IT S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 416 KPFFI-QGEELSITPSIGIAMYPDYGTNVNELMKNADMAMYRAKANGKNRFVFFS 469


>gi|300767519|ref|ZP_07077430.1| diguanylate cyclase/phosphodiesterase domain 1 containing protein
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
 gi|308181668|ref|YP_003925796.1| diguanylate cyclase/phosphodiesterase domain 1 containing protein
           [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|300494898|gb|EFK30055.1| diguanylate cyclase/phosphodiesterase domain 1 containing protein
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
 gi|308047159|gb|ADN99702.1| diguanylate cyclase/phosphodiesterase domain 1 containing protein
           [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 378

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 12/162 (7%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ + N +A+       ++S      +L+++ FDID+FKQ+ND +GH  GDK++  ++
Sbjct: 217 DALTKIENFAAYKTAINYQVTSSRKNGSQLTMLMFDIDHFKQVNDTYGHLAGDKILQHVA 276

Query: 160 DQLVVVF--GTPMF-VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
               +VF    P   + R GGEEF          EA  +A  L   I +  + ++    I
Sbjct: 277 QVATIVFHANNPQISLYRTGGEEFNVIFPNYDLTEALAVAEQLFAAINHIAVPVND-HQI 335

Query: 217 HITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVC 257
            ++IS G++E    +   T  Y R D  LY +KK GR ++  
Sbjct: 336 QLSISIGLSELAADDQSPTAFYQRVDANLYHSKKHGRMQITA 377


>gi|197337468|ref|YP_002158678.1| two component response regulator [Vibrio fischeri MJ11]
 gi|197314720|gb|ACH64169.1| two component response regulator [Vibrio fischeri MJ11]
          Length = 299

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 13/166 (7%)

Query: 106 IDCLSGLLNHSAF---ISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+ LLN   F   + +  + +++L     ++ FDID+FK  NDN+GH  GD+V+  +
Sbjct: 135 LDGLTNLLNRRMFDFDLENRWAESQRLQANFGLIMFDIDHFKLYNDNYGHSAGDEVLVRV 194

Query: 159 SDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI--NISSGPS 215
           +  L+         V R GGEEF      +  ++    A  LR+ I +  I  + SS   
Sbjct: 195 AKALMKTLQRKTDRVYRYGGEEFILIQFDTDFEQLRQTAELLRQCIYDLNITHDFSSHKR 254

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           + I++ A +      +PI  ++   DQ LY AKK GRN   C S I
Sbjct: 255 VSISVGATLINAEQIQPIPYLLEITDQQLYKAKKQGRN---CVSTI 297


>gi|193782686|ref|NP_436089.2| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021]
 gi|193073142|gb|AAK65501.2| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021]
          Length = 1071

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 9/169 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE-KLSIVFFDIDYFKQINDN 145
           ++  ++  +++ ++R D L+GL N       F  +L   N  +++++  D+D FK +ND 
Sbjct: 637 EDTLLAQKQMAHMARHDMLTGLANRMFFRECFEEALNESNHARMAVLCLDLDGFKAVNDT 696

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKIIE 204
            GHP GD ++  +S +L+    T   V RLGG+EFA    L  S  EA  LA   R I  
Sbjct: 697 LGHPAGDALLRQVSTRLIQAVRTTETVARLGGDEFAIIQPLTESRDEAFRLAQ--RLIDT 754

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252
            S+     G + ++  S GIA           +I  AD ALY AK SGR
Sbjct: 755 LSEPFSIEGAAANVGTSIGIAFAPEDGTSADELIKAADIALYSAKSSGR 803


>gi|168186555|ref|ZP_02621190.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium
           botulinum C str. Eklund]
 gi|169295410|gb|EDS77543.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium
           botulinum C str. Eklund]
          Length = 961

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 92/170 (54%), Gaps = 11/170 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVG 151
           RI  L+  D L+GL N +A++  + +  +K+       +I+F DID FK +ND  GH  G
Sbjct: 527 RIEYLAYNDSLTGLPNRAAYLRYIYNIIQKVKENKKIGAIIFLDIDNFKNVNDTLGHDYG 586

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINI 210
           ++++  +++++  V        RLGG+EF     GS  E++  +LA+ + K+   S   I
Sbjct: 587 NELLKRVNERISYVLTENEKFYRLGGDEFIIVQCGSYDERDIELLADKILKVFNKSF--I 644

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259
                ++ T+S GI+   +      ++++ AD A+Y AK  G+N+ + ++
Sbjct: 645 VKNERVYTTVSLGISFFPNDSCDHNVLFKNADIAMYSAKNLGKNKYLVYN 694


>gi|53802317|ref|YP_112991.1| CBS/GGDEF/EAL domain-containing protein [Methylococcus capsulatus
           str. Bath]
 gi|53756078|gb|AAU90369.1| CBS/GGDEF/EAL domain protein [Methylococcus capsulatus str. Bath]
          Length = 594

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 16/176 (9%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           Y+ ++ L     L+  L  +      G Y  +++++F D+D FK +ND  GH  GD+++ 
Sbjct: 168 YDPLTSLPNRLLLNDRLKRACLRGQRGGY--RIALLFIDLDRFKLVNDTLGHAAGDQLLQ 225

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFA---AAALGSSE--QEAAILANDLRK--IIENSQIN 209
            ++ +          V RLGG+EF        G  E    AA LA  L +  +I+N +I 
Sbjct: 226 GVAGRFAACVRKVDTVARLGGDEFTVLLEPVQGPDEALAVAAKLAQSLERPFLIQNHEIT 285

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            S+  SI + +        H   +  ++ +AD A+Y AK+ GRNR   F++  N+T
Sbjct: 286 TSA--SIGVVLFPE-----HDATVEGLMRKADAAMYCAKREGRNRFALFTEEMNST 334


>gi|109897081|ref|YP_660336.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109699362|gb|ABG39282.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
          Length = 350

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 13/179 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEK----LSIVFFDIDYFKQIND 144
           EL      +  LS+ D L+ + N   F     +L  +  +    ++++  D D+FK +ND
Sbjct: 171 ELQAQRRELETLSQTDALTSIYNRGYFNQYFENLWHHATRHKIEIALLIIDADHFKSVND 230

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  L+  +         +  R GGEEFA    G + Q++  +A+ + + I
Sbjct: 231 TYGHLGGDACLIHLAHAINKPINRATDIAVRYGGEEFAILLSGCNPQQSKKMADAIMQSI 290

Query: 204 ENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  +  +     I IT+S GIA      H++  + +I +AD ALY AK +GRNR V FS
Sbjct: 291 QQHKF-VYQDSEIPITVSIGIATLVPSPHQKS-NELIEQADSALYRAKATGRNRAVLFS 347


>gi|332800172|ref|YP_004461671.1| diguanylate cyclase [Tepidanaerobacter sp. Re1]
 gi|332697907|gb|AEE92364.1| diguanylate cyclase [Tepidanaerobacter sp. Re1]
          Length = 221

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 104/225 (46%), Gaps = 28/225 (12%)

Query: 48  IFLFYIGLTPFYGLEYILV-----ENLSLVIISITISLLLGYISGSILKELFI-SYNRIS 101
           IF  +IG+    G+  + +     +NL L+  S+TI +++    G   K+L+I +Y    
Sbjct: 13  IFFLWIGIGLSSGIIQLYMHKKCGKNL-LMTASLTIQIIMWLGLGYSFKKLYIFAYQ--- 68

Query: 102 QLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
                D L+ L N     + L         N+ LS+   DID FK+IND FGH  GDKV+
Sbjct: 69  -----DELTNLWNRRYLYTRLKDEMKRLKQNKVLSLAIIDIDNFKRINDTFGHLFGDKVL 123

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L         V R GGEEF      +  + A I+   +RKIIEN          
Sbjct: 124 IEMACILQKNLRKNDIVARWGGEEFIIVLPKTDVKGAKIVFERIRKIIENYDF------G 177

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             IT+S GIA          +I  AD+ALY AK+  +N +  + +
Sbjct: 178 CKITVSGGIAFVGEDIEADKLIGMADEALYEAKRR-KNLIAVYGE 221


>gi|330874514|gb|EGH08663.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 332

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 2/129 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+ +  DID FK +ND +GH  GD V+  +++            GR+GGEEFAA   G +
Sbjct: 203 LAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCA 262

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVA 247
            + A  +A  L++ I+      ++G +  IT S G+     ++     +Y RAD A+Y A
Sbjct: 263 PEMAMQIAERLQREIQRQNFQ-ANGSTFSITASQGLTNLGPEDQGLEALYGRADAAMYQA 321

Query: 248 KKSGRNRVV 256
           K+ G+N++V
Sbjct: 322 KRQGKNQIV 330


>gi|313199910|ref|YP_004038568.1| PAS/PAC/GAF sensor-containing diguanylate cyclase [Methylovorus sp.
           MP688]
 gi|312439226|gb|ADQ83332.1| diguanylate cyclase with PAS/PAC and GAF sensors [Methylovorus sp.
           MP688]
          Length = 453

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 99  RISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ QL++ D L+ L N         A +SS       L++++ D+D FKQ+ND+ GH  G
Sbjct: 284 RLQQLAQYDALTTLPNREYLTHKLEAALSSAEREQRHLALLYLDLDKFKQVNDSLGHDAG 343

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS-QIN 209
           D ++  ++ +L +       V RLGG+EF       SS  +AA++   LR ++    +I+
Sbjct: 344 DTLLQEVAARLKLSMRETDMVARLGGDEFVVLLQDISSPDQAAMVVEKLRGVLAQPFEID 403

Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
              G  + I  S GIA    H +    ++  AD+A+Y  K   RN
Sbjct: 404 ---GHRLAIRPSIGIALYPDHGQDRHALLKHADKAMYQEKHGERN 445


>gi|316933558|ref|YP_004108540.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           DX-1]
 gi|315601272|gb|ADU43807.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           DX-1]
          Length = 656

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 5/165 (3%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGH 148
           E+  S   + Q++R D L+GL N S F  +  +     + ++ V FD+D FK IND  GH
Sbjct: 213 EVLSSNRALEQIARADPLTGLANRSHFRDAAAAACRSGQGVAFVLFDVDNFKTINDTRGH 272

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+VIA +++ L    G      RLGG+EF     G      A+             +
Sbjct: 273 DAGDRVIAAVAELLRSSCGPHDLPVRLGGDEFIVVLQGEDVAARALALARRLSGALTRPL 332

Query: 209 NISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGR 252
            ++  P + I+ S GIA        +  +  RAD ALY AK  GR
Sbjct: 333 RVAGQP-LAISCSIGIAAHSGGPIDVEDVFSRADAALYRAKDDGR 376


>gi|262191056|ref|ZP_06049264.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
 gi|262033077|gb|EEY51607.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
          Length = 413

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 23/168 (13%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+ +    A    L     K ++   D+D+FK+ ND +GH  GD V+  ++ +L  + 
Sbjct: 241 DPLTQIPGRQALDQDLKHIGRKFTLAMLDVDHFKKFNDTYGHDTGDDVLKLVASRLREIN 300

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---------------- 210
           G    V R GGEEF+    G   +E       LR+ IE+ ++ I                
Sbjct: 301 GKAR-VYRYGGEEFSIIYKGKLAKEVLPFIEALRQDIESYELVIRDTNQRPKSHAEGAKK 359

Query: 211 ----SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
               S+  ++ ITIS G+ +   ++ PI   +  AD ALY AK++GRN
Sbjct: 360 RSRKSNSDNVTITISIGVCDSELYRHPIEA-LKAADGALYKAKQAGRN 406


>gi|161621052|ref|YP_001594938.1| diguanylate cyclase [Brucella canis ATCC 23365]
 gi|225629456|ref|ZP_03787489.1| GGDEF domain protein [Brucella ceti str. Cudo]
 gi|254700201|ref|ZP_05162029.1| diguanylate cyclase [Brucella suis bv. 5 str. 513]
 gi|254703322|ref|ZP_05165150.1| diguanylate cyclase [Brucella suis bv. 3 str. 686]
 gi|254710767|ref|ZP_05172578.1| diguanylate cyclase [Brucella pinnipedialis B2/94]
 gi|256029150|ref|ZP_05442764.1| diguanylate cyclase [Brucella pinnipedialis M292/94/1]
 gi|256058834|ref|ZP_05449050.1| diguanylate cyclase [Brucella neotomae 5K33]
 gi|260167757|ref|ZP_05754568.1| diguanylate cyclase [Brucella sp. F5/99]
 gi|260567748|ref|ZP_05838217.1| aminobutyraldehyde dehydrogenase [Brucella suis bv. 4 str. 40]
 gi|261318337|ref|ZP_05957534.1| diguanylate cyclase [Brucella pinnipedialis B2/94]
 gi|261322772|ref|ZP_05961969.1| diguanylate cyclase [Brucella neotomae 5K33]
 gi|261750694|ref|ZP_05994403.1| diguanylate cyclase [Brucella suis bv. 5 str. 513]
 gi|261753950|ref|ZP_05997659.1| diguanylate cyclase [Brucella suis bv. 3 str. 686]
 gi|261757193|ref|ZP_06000902.1| aminobutyraldehyde dehydrogenase [Brucella sp. F5/99]
 gi|265986135|ref|ZP_06098692.1| diguanylate cyclase [Brucella pinnipedialis M292/94/1]
 gi|294853960|ref|ZP_06794632.1| diguanylate cyclase [Brucella sp. NVSL 07-0026]
 gi|306846209|ref|ZP_07478771.1| diguanylate cyclase [Brucella sp. BO1]
 gi|161337863|gb|ABX64167.1| diguanylate cyclase (GGDEF) domain [Brucella canis ATCC 23365]
 gi|225615952|gb|EEH13001.1| GGDEF domain protein [Brucella ceti str. Cudo]
 gi|260154413|gb|EEW89494.1| aminobutyraldehyde dehydrogenase [Brucella suis bv. 4 str. 40]
 gi|261297560|gb|EEY01057.1| diguanylate cyclase [Brucella pinnipedialis B2/94]
 gi|261298752|gb|EEY02249.1| diguanylate cyclase [Brucella neotomae 5K33]
 gi|261737177|gb|EEY25173.1| aminobutyraldehyde dehydrogenase [Brucella sp. F5/99]
 gi|261740447|gb|EEY28373.1| diguanylate cyclase [Brucella suis bv. 5 str. 513]
 gi|261743703|gb|EEY31629.1| diguanylate cyclase [Brucella suis bv. 3 str. 686]
 gi|264658332|gb|EEZ28593.1| diguanylate cyclase [Brucella pinnipedialis M292/94/1]
 gi|294819615|gb|EFG36615.1| diguanylate cyclase [Brucella sp. NVSL 07-0026]
 gi|306273460|gb|EFM55321.1| diguanylate cyclase [Brucella sp. BO1]
          Length = 389

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 9/164 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF--ISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGD 152
           N + +    D L+GLLN       + L  +  +     ++  DID+FK IND +GHPVGD
Sbjct: 210 NELQRERDSDPLTGLLNRRGLERQADLRLHTPQCLSYGVIIADIDHFKAINDAYGHPVGD 269

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-IS 211
           +V+   +  L         VGR+GGEEF     G++E E   L N L  ++     + + 
Sbjct: 270 QVLVEFARILSSASKDHAIVGRVGGEEFVLLVSGTAE-ECEALGNRLCGLVARHAFSKLP 328

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +G    +T S GIA     E +     RAD AL   K  GRNRV
Sbjct: 329 AGQK--VTSSFGIAMVRSGETLWETAARADLALMRVKNLGRNRV 370


>gi|152990661|ref|YP_001356383.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
 gi|151422522|dbj|BAF70026.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
          Length = 704

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 95/191 (49%), Gaps = 12/191 (6%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN----HSAFISSLGSYNEK---LSI 131
           SL+   I+ +I++ L  +   +  +S+ D L+ L N    H     ++  + +K    +I
Sbjct: 257 SLIAEEINKNIMR-LQSTLKSLDHISKHDSLTQLPNRKCFHEYLDKAMKDFTQKSSQFAI 315

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  D+D FK INDNFGHP GDK++  ++ ++  V      + RLGG+EF    +      
Sbjct: 316 MLIDLDNFKLINDNFGHPFGDKLLKIVASRIRNVLKKEDVIARLGGDEF--GVILRRIHN 373

Query: 192 AAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKE-PISTIIYRADQALYVAKK 249
             ++ N   KII+  Q  I    +I +IT S GI     K+      +  AD A+Y AKK
Sbjct: 374 PIVVGNIANKIIDILQKPIKIDDTIVYITASLGIYIPTDKKIDAKKALSYADIAMYKAKK 433

Query: 250 SGRNRVVCFSD 260
           SG+N    F +
Sbjct: 434 SGKNSYKFFDE 444


>gi|28871248|ref|NP_793867.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28854498|gb|AAO57562.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 756

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 121/275 (44%), Gaps = 53/275 (19%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN-------------LSLVIISI 76
           Y  +F  +F   V  +    L  + L     L  ++ EN             L L I +I
Sbjct: 178 YSGMFHQMFRYGVSLLLGAGLLTMHLMGMRALRLVIPENAELHIPGTENSQQLGLTIAAI 237

Query: 77  TISLLLGYISGS------------------ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           T+ ++ G IS +                  +L +L  +   + Q++  D L+ L+N   F
Sbjct: 238 TLLIIAGSISAAMADKKLQGKENDLQRVNALLTQLDQARVSLQQVAHYDPLTNLINRRGF 297

Query: 119 ----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  L  +      L+++F DID+FK+IND+ GH  GD+++  +++++         
Sbjct: 298 NQIFAEKLLEHTHSKGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDV 357

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIA----- 225
           V R GG+EF         +EA  LA+   +++   +  I+ +G  + +T S GIA     
Sbjct: 358 VARFGGDEFCILLSIPDYEEARHLAH---RVMHKMKEPIALAGRRMVMTTSIGIAVFPRD 414

Query: 226 -ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              C +     ++  AD ALY +K +GRNRV  FS
Sbjct: 415 GSTCDE-----LLKHADLALYQSKGNGRNRVNFFS 444


>gi|330505281|ref|YP_004382150.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
 gi|328919567|gb|AEB60398.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
          Length = 1244

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 90/170 (52%), Gaps = 21/170 (12%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL------GSYNEKL-SIVFFDIDYFKQINDNFGHPVG 151
           R+   +  D L+GL N   F + L         +++L +++F D+D FKQIND+ GHPVG
Sbjct: 802 RLDHQAHHDPLTGLPNRLLFENRLRGALDGTRADDQLGAVLFLDLDRFKQINDSLGHPVG 861

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKI------IE 204
           D+++  ++++L +       V RLGG+EF     G  + Q+A  +A  L +       ++
Sbjct: 862 DQLLKAIAERLRLQLRDIDTVARLGGDEFIILLPGLHQPQDAEQIAQKLLECFGASFQLD 921

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           N +  IS+   I +  + G       + ++T++  AD A+Y +K  GRNR
Sbjct: 922 NHEFFISASIGISLYPTDG-------QDVATLVKNADAAMYQSKAKGRNR 964


>gi|325123825|gb|ADY83348.1| diguanylate cyclase response regulator [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 566

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 9/164 (5%)

Query: 99  RISQLSRIDCLSGLLNH---SAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152
           ++  ++  D L+G+ N    S ++  + SY +K +   ++  DID FKQ+ND +GH VGD
Sbjct: 403 QLKNIANTDPLTGVSNRLALSEYLKIVESYPQKFTQTCLMIIDIDRFKQVNDQYGHIVGD 462

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
           +VI  +++QL     +   + R GG+EF          +A +LA  +R  I   +I +S 
Sbjct: 463 RVIVSIAEQLKQNIRSSDLIVRYGGDEFLILLEQVQFVDARLLAEKIRITISLEEICLSG 522

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S   +H+++S G A          ++ +AD++L  AK  GRN V
Sbjct: 523 SDEKLHVSVSIGFA--IGAANWIDLLEKADRSLLRAKARGRNAV 564


>gi|313898431|ref|ZP_07831968.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2]
 gi|312956813|gb|EFR38444.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2]
          Length = 680

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 80/166 (48%), Gaps = 26/166 (15%)

Query: 104 SRIDCLSGLLNHSAFISSLGS---YNEKLS-----IVFFDIDYFKQINDNFGHPVGDKVI 155
           S  D L+G+ N SA +  LG     N K S     ++  DID FKQIND FGH  GD VI
Sbjct: 521 SSYDYLTGIYNRSALMQ-LGEDMLENAKKSGHSIGVLMMDIDDFKQINDTFGHMQGDAVI 579

Query: 156 AFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
                + V V    M     + R GGEEF       S+     LA ++R   E   I   
Sbjct: 580 -----KQVTVLMKQMQRHGIIARFGGEEFILLIDSLSKHTLYELAEEIRYACEACTIPAD 634

Query: 212 SGPSIHITISAGIAERCHKEPISTIIY----RADQALYVAKKSGRN 253
           +G +IH TIS G    C++  +   +      ADQ LY+AK++G+N
Sbjct: 635 TG-TIHFTISIGC---CYQNQVHATLKELFNEADQRLYIAKRNGKN 676


>gi|297580350|ref|ZP_06942277.1| GGDEF family protein [Vibrio cholerae RC385]
 gi|297535996|gb|EFH74830.1| GGDEF family protein [Vibrio cholerae RC385]
          Length = 413

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 23/168 (13%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+ +    A    L     K ++   D+D+FK+ ND +GH  GD V+  ++ +L  + 
Sbjct: 241 DPLTQIPGRQALDQDLKHIGRKFTLAMLDVDHFKKFNDTYGHDTGDDVLKLVASRLREIN 300

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---------------- 210
           G    V R GGEEF+    G   +E       LR+ IE+ ++ I                
Sbjct: 301 GKAR-VYRYGGEEFSIIYKGKLAKEVLPFIEALRQDIESYELVIRDTNQRPKSHAEGAKK 359

Query: 211 ----SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
               S+  ++ ITIS G+ +   ++ PI   +  AD ALY AK++GRN
Sbjct: 360 RSRKSNSDNVTITISIGVCDSELYRHPIEA-LKAADGALYKAKQAGRN 406


>gi|269793186|ref|YP_003318090.1| diguanylate cyclase with PAS/PAC sensor [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100821|gb|ACZ19808.1| diguanylate cyclase with PAS/PAC sensor [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 297

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 80/158 (50%), Gaps = 2/158 (1%)

Query: 100 ISQLSRIDCLSGLLNH-SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           + QL+R+     L +   + +  L ++     ++ FDID FK +ND +GH +GD+V+  +
Sbjct: 139 VDQLTRVGNRRFLDDTLESILEDLKAHRWPFGVILFDIDRFKSVNDTYGHQLGDRVLQAV 198

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L     +   V R GGEEF         ++    A  LR ++  + + +     +++
Sbjct: 199 ASTLSSSIRSFDAVARYGGEEFVVMLRNVDREKLKRDAERLRLLVSATWVTLGD-REVNV 257

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T+S G      ++   +++ RAD  +Y +K++GRNR+ 
Sbjct: 258 TVSGGATMARPEDTPESLLDRADSLMYRSKEAGRNRIT 295


>gi|254470381|ref|ZP_05083785.1| diguanylate cyclase/phosphodiesterase [Pseudovibrio sp. JE062]
 gi|211960692|gb|EEA95888.1| diguanylate cyclase/phosphodiesterase [Pseudovibrio sp. JE062]
          Length = 772

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 25/175 (14%)

Query: 107 DCLSGLLNHSAF------ISSLGSYNEKLS-IVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L GL N + F      +       ++++ IVF D+D+FKQIND+ GH +GD+VI  ++
Sbjct: 338 DALCGLPNRTWFEVFAADVLKRDRQKQRITGIVFLDLDHFKQINDSLGHSIGDEVIKLVA 397

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--------LANDLRKIIENSQINIS 211
           ++L         V R+ G+EF       ++ E  I        + +D  K+ ++      
Sbjct: 398 ERLKASINPEDRVARVSGDEFLLVLSHRTKMEEIIETCMYIEKMLSDAFKVEKH------ 451

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
               I  T S G+A    H   ++ ++ RAD ALY AKK GR R V F     +T
Sbjct: 452 ---KILTTASMGVAIAPAHGHDLTELLRRADIALYQAKKLGRGRYVLFEKEMEDT 503


>gi|166712019|ref|ZP_02243226.1| GGDEF family protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 990

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 10/156 (6%)

Query: 107 DCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN +  +++L       + +E+ L++V  D+D+FK +ND  GH  GD V+A + 
Sbjct: 816 DELTGLLNRAGILAALREMLLHAARSERPLAVVLIDLDHFKLVNDQHGHLAGDAVLAGVG 875

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            ++  +      +GR GGEE  A   G +      L    R I  +  ++      +H+T
Sbjct: 876 RRMDTLVRGDDRIGRYGGEELLALLPGLNPGATHRLDALHRGICGDYPVDDG---WLHLT 932

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+A     E    ++ RAD ALY AK+ GRNR+
Sbjct: 933 CSIGVAWFQAGETQEQLLARADAALYRAKRGGRNRI 968


>gi|39996758|ref|NP_952709.1| response regulator/GGDEF domain-containing protein [Geobacter
           sulfurreducens PCA]
 gi|39983646|gb|AAR35036.1| response regulator/GGDEF domain protein [Geobacter sulfurreducens
           PCA]
 gi|298505770|gb|ADI84493.1| response receiver-modulated diguanylate cyclase [Geobacter
           sulfurreducens KN400]
          Length = 458

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 16/173 (9%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFG 147
           + Y+    +  +D L+GL N+     SL         +   +S++F D+D+FK +ND  G
Sbjct: 283 LRYSSARDMLYVDELTGLFNYRYLDISLDRELKRADRFGSVVSMIFIDMDHFKGVNDTHG 342

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  G +V+  +   L         + R GG+EF    + + E+ AA +A  +R+ IE+  
Sbjct: 343 HLFGSQVLHEVGQLLKKSVREVDVIIRYGGDEFTIILVETGEKGAATVAERIRRSIEDHH 402

Query: 208 INISSGPSIHITISAGIAERCHKEPIST-----IIYRADQALYVAKKSGRNRV 255
              S G  + +T S G A  C+  P+ T     ++  AD+A+Y  K+ G+NRV
Sbjct: 403 FLASEGLDVRLTASLGYA--CY--PLDTQSKMELLELADKAMYRGKEEGKNRV 451


>gi|325971589|ref|YP_004247780.1| diguanylate cyclase [Spirochaeta sp. Buddy]
 gi|324026827|gb|ADY13586.1| diguanylate cyclase [Spirochaeta sp. Buddy]
          Length = 456

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 78/168 (46%), Gaps = 8/168 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           I Y  +   SR D L+GLLN   F+   S   S  +  ++   DID FK+IND +GH  G
Sbjct: 292 IRYELVKARSRTDSLTGLLNRREFLNLLSQTDSGEQSYAVALIDIDNFKEINDTYGHLNG 351

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DK +  L + L         + R GG+EF       S  +       L + I ++ + + 
Sbjct: 352 DKALLSLVETLKHHIRMSDVIARFGGDEFILLFRDCSNID---FCKRLFQAIRHTNVEL- 407

Query: 212 SGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
            G  + + IS GIA    +E     +I  AD+ LY AK  G+ R+  F
Sbjct: 408 EGKQVEVVISMGIAFSADEEKSPQALIATADRRLYQAKLGGKGRLCSF 455


>gi|256157342|ref|ZP_05455260.1| diguanylate cyclase [Brucella ceti M490/95/1]
 gi|256253678|ref|ZP_05459214.1| diguanylate cyclase [Brucella ceti B1/94]
 gi|261220815|ref|ZP_05935096.1| diguanylate cyclase [Brucella ceti B1/94]
 gi|265995829|ref|ZP_06108386.1| diguanylate cyclase [Brucella ceti M490/95/1]
 gi|260919399|gb|EEX86052.1| diguanylate cyclase [Brucella ceti B1/94]
 gi|262550126|gb|EEZ06287.1| diguanylate cyclase [Brucella ceti M490/95/1]
          Length = 389

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 9/164 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF--ISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGD 152
           N + +    D L+GLLN       + L  +  +     ++  DID+FK IND +GHPVGD
Sbjct: 210 NELQRERDSDPLTGLLNRRGLERQADLRLHTPQCLSYGVIIADIDHFKAINDAYGHPVGD 269

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-IS 211
           +V+   +  L         VGR+GGEEF     G++E E   L N L  ++     + + 
Sbjct: 270 QVLVEFARILSSASKDHAIVGRVGGEEFVLLVSGTAE-ECEALGNRLCGLVARHAFSKLP 328

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +G    +T S GIA     E +     RAD AL   K  GRNRV
Sbjct: 329 AGQK--VTSSFGIAMVRSGETLWETAARADLALMRVKNLGRNRV 370


>gi|237732955|ref|ZP_04563436.1| diguanylate cyclase [Mollicutes bacterium D7]
 gi|229383945|gb|EEO34036.1| diguanylate cyclase [Coprobacillus sp. D7]
          Length = 777

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 15/206 (7%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y+ V NL L++     + ++  ++ +I+++  I Y R       D L+GLLN  AFI  +
Sbjct: 524 YVFV-NLRLLVNDNAYTGVIENVTNTIVEKNVIEYERDH-----DALTGLLNRRAFIRIM 577

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            S  E         +++  D+D  K INDN+GH +GD  I+  ++  V        + R+
Sbjct: 578 NSLFENEINKIKIAALLMLDLDNLKYINDNYGHEIGDNYISKAAETFVNSTPENTIISRI 637

Query: 176 GGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPI 233
            G+EF     G  ++     L N L++ I  + I ++   + H+  S GIA      E  
Sbjct: 638 SGDEFFVFFYGYDDENVIKQLINKLKEAISKAFIPLADNSNFHVNASGGIAWYPRDSESF 697

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
             + + AD A+Y  K++ +  +  F+
Sbjct: 698 EKLQHYADYAMYKIKRTSKGNLTEFN 723


>gi|119511357|ref|ZP_01630470.1| PleD-like protein [Nodularia spumigena CCY9414]
 gi|119463979|gb|EAW44903.1| PleD-like protein [Nodularia spumigena CCY9414]
          Length = 1613

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/129 (37%), Positives = 65/129 (50%), Gaps = 1/129 (0%)

Query: 129  LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            +S+V  D+DYFK+ ND +GH VGD V+  +   L           R GGEE       SS
Sbjct: 1482 ISVVMIDVDYFKRFNDTYGHDVGDYVLQTIGAMLKETVRGSDIACRYGGEEMTLILPESS 1541

Query: 189  EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247
             +E  I A ++R+ I    +  +      +TIS GIA    H      +I  AD ALY A
Sbjct: 1542 LEETTIKAEEIREAIAQLTLAYNGQHLGKLTISLGIAGFPKHGTTGIALIQAADAALYRA 1601

Query: 248  KKSGRNRVV 256
            K +GRN+VV
Sbjct: 1602 KAAGRNQVV 1610


>gi|119486186|ref|ZP_01620246.1| PleD-like protein [Lyngbya sp. PCC 8106]
 gi|119456677|gb|EAW37806.1| PleD-like protein [Lyngbya sp. PCC 8106]
          Length = 698

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 15/173 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+ + N   F          L    + LS++  DIDYFK  ND +GH  GD
Sbjct: 528 LEKLAHTDGLTQIANRRYFDDYLIKEWQRLRREKQYLSLILLDIDYFKFYNDFYGHQSGD 587

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINI 210
           K +  ++  +      P   V R GGEEF      ++++    +A  ++++I   + ++ 
Sbjct: 588 KSLISIAQAIKKTLKRPADLVARYGGEEFVVVLPNTNQKGVINIAQQIQQMIRTLAIVHQ 647

Query: 211 SSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            S  S  IT+S GIA  C     K   + +I +AD+ LY AK+ GRNR +  S
Sbjct: 648 KSQVSNIITLSQGIA--CTIPNSKTSPAQLIAQADKVLYTAKQQGRNRYIVSS 698


>gi|293602985|ref|ZP_06685423.1| sensory box protein [Achromobacter piechaudii ATCC 43553]
 gi|292818605|gb|EFF77648.1| sensory box protein [Achromobacter piechaudii ATCC 43553]
          Length = 694

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 22/172 (12%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           ++ ++  ++  D L+G+ N   F   L       + + + +++  D+D FK +ND  GHP
Sbjct: 268 AHAQVRYMAHHDTLTGMPNRRLFREQLLRALNHCADDRRTAVLCLDLDNFKSVNDTLGHP 327

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN---- 205
            GD+++   + +L  V      + RLGG+EFA       +Q      +D+RK+ E     
Sbjct: 328 CGDELLRLFARRLPKVLREQDTLARLGGDEFAVVLPNIGQQ------DDVRKMAERIIDA 381

Query: 206 -SQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRN 253
             Q     G ++ +++S GIA    + P  T   ++  AD ALY AK++GRN
Sbjct: 382 VRQPFEVEGHTVPMSVSIGIA--LAETPDHTADHLLRYADMALYEAKRNGRN 431


>gi|172037524|ref|YP_001804025.1| hypothetical protein cce_2611 [Cyanothece sp. ATCC 51142]
 gi|171698978|gb|ACB51959.1| hypothetical protein cce_2611 [Cyanothece sp. ATCC 51142]
          Length = 685

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 10/165 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           Y+RI+Q+                  +    + LS++  D+D+FK  ND FGHP GD+ + 
Sbjct: 235 YDRITQIPNRHYFEHYFAQE--WRRMAREKQPLSLIVCDVDFFKAYNDTFGHPQGDRCLQ 292

Query: 157 FLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP- 214
            ++  L      P   V R GGEEF A    ++   A  +A  ++  I+  Q+ + S   
Sbjct: 293 EVAYTLKYTLHRPGDMVARYGGEEFVAILPNTNASGAVHVAQQMQSAIK--QLKVPSATQ 350

Query: 215 --SIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
             S  +TIS G+A      ++    ++  AD+ALY AK+ GR++V
Sbjct: 351 TVSEFVTISLGVASVIPSQEKSPKQLLNEADKALYEAKQKGRDQV 395


>gi|153800631|ref|ZP_01955217.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|124123766|gb|EAY42509.1| GGDEF family protein [Vibrio cholerae MZO-3]
          Length = 412

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 23/168 (13%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+ +    A    L     K ++   D+D+FK+ ND +GH  GD V+  ++ +L  + 
Sbjct: 241 DPLTQIPGRQALDQDLKHIGRKFTLAMLDVDHFKKFNDTYGHDTGDDVLKLVASRLREIN 300

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSIH------ 217
           G    V R GGEEF+    G   +E       LR+ IE+ ++   + +  P  H      
Sbjct: 301 GKAR-VYRYGGEEFSIIYKGKLAKEVLPFIESLRQDIESYELVIRDTNQRPKSHAEGAKK 359

Query: 218 -----------ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
                      ITIS G+ +   ++ PI   +  AD ALY AK++GRN
Sbjct: 360 RSRKSNSDIVTITISIGVCDSELYRHPIEA-LKAADGALYKAKQAGRN 406


>gi|325971294|ref|YP_004247485.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Spirochaeta sp. Buddy]
 gi|324026532|gb|ADY13291.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Spirochaeta sp. Buddy]
          Length = 1480

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 96/216 (44%), Gaps = 30/216 (13%)

Query: 57  PFY---GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           PFY   G  ++   NLS   IS + S  +GYI+   +    I    + + S+ D L+GL 
Sbjct: 346 PFYREKGYPWVRF-NLS---ISTSTSQTIGYIAIQDIDADKIRQQLLIERSQRDSLTGLF 401

Query: 114 NH---SAFISSLGSYNEKLSIVFF-DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
           N       I  +    E L   +  DID FKQIND +GH  GD V+  ++++L   F   
Sbjct: 402 NRISLEEMIQDILKNQESLGGFYLIDIDSFKQINDTYGHERGDWVLKQIAEELQAHFPGE 461

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI--TISAGIAER 227
             +GRLGG+EF A       Q  A               +    P++ I  T S G+   
Sbjct: 462 TIIGRLGGDEFVAYVPDCQTQSLAFSLG----------ASFCKKPTLEIPCTCSVGL--- 508

Query: 228 CHKE----PISTIIYRADQALYVAKKSGRNRVVCFS 259
           C KE        +   AD ALY AK+ G+N+ V + 
Sbjct: 509 CMKEGEFLSFEQLYQNADLALYRAKELGKNQCVLYD 544


>gi|238064412|ref|ZP_04609121.1| diguanylate cyclase [Micromonospora sp. ATCC 39149]
 gi|237886223|gb|EEP75051.1| diguanylate cyclase [Micromonospora sp. ATCC 39149]
          Length = 216

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 8/154 (5%)

Query: 107 DCLSGLLNHSAF---ISSL--GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GL N  AF    ++L   +  + L  +  D+D FKQ+ND +GH  GD+V+  ++++
Sbjct: 51  DPLTGLPNRRAFFRLAATLLTDTVGQPLIAIVLDLDDFKQVNDRYGHAAGDQVLISVAER 110

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITI 220
           L   F     V RLGG+EF A  L +   +   L +  R++ E+    I   G S+ +T 
Sbjct: 111 L-AAFAGDNLVARLGGDEF-AGLLTTPTVDRRWLEHASRRLCESLAAPIPLRGLSLRVTA 168

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           S G+A       ++  + RAD A+Y AK  G +R
Sbjct: 169 SVGLAPVTCPTQLTEALDRADAAMYRAKSVGGSR 202


>gi|145298106|ref|YP_001140947.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850878|gb|ABO89199.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 320

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 93/177 (52%), Gaps = 22/177 (12%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE---------KLSIVFFDIDYFKQINDNFGHPV 150
           ++ LS+ D L+GL N   F S L  +NE          +S +  D+D FK  ND+FGH V
Sbjct: 145 VTHLSQHDPLTGLANRRLFNSFL--HNEWRRSMRERTPISFIMLDLDNFKACNDHFGHQV 202

Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQI 208
           GD+++  +   L      P     RLGG+EF A  LG++ +EAA+ +   +R  I+  ++
Sbjct: 203 GDELLRQVGHLLSAFCQRPADLPSRLGGDEF-AVVLGNTGKEAALGMGEAIRLGIK--EL 259

Query: 209 NISSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNR---VVCFS 259
           +++      ++ S GIA +  +  +     ++  AD ALY AKK G+NR   V C S
Sbjct: 260 SMNELGDARLSASIGIATQLPERVLVSEDELLAAADMALYTAKKEGKNRCHSVACPS 316


>gi|89073162|ref|ZP_01159701.1| putative transcriptional regulator [Photobacterium sp. SKA34]
 gi|89051115|gb|EAR56572.1| putative transcriptional regulator [Photobacterium sp. SKA34]
          Length = 404

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 9/161 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISS--LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +++ +++  D L+GL N   F +     + +E L+I   DID+FK++ND +GH  GD V+
Sbjct: 249 DKLYRMANQDALTGLWNRRYFFTHRCCQTEDESLNIAMIDIDFFKKVNDTYGHDGGDAVL 308

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +S +++        V R GGEEF     G      + L   +R+ IE+  I     P 
Sbjct: 309 ISIS-KIIDAHFPESIVARFGGEEFCIQHSGHFHSFLSTLEL-IRQRIESITI-----PY 361

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +   IS  I      E +   I +AD  LY AKK+GRN++V
Sbjct: 362 LDQKISISIGATTGLESLENSIKQADDNLYTAKKNGRNKLV 402


>gi|148265482|ref|YP_001232188.1| diguanylate cyclase with PAS/PAC sensor [Geobacter uraniireducens
           Rf4]
 gi|146398982|gb|ABQ27615.1| diguanylate cyclase with PAS/PAC sensor [Geobacter uraniireducens
           Rf4]
          Length = 503

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 90/178 (50%), Gaps = 13/178 (7%)

Query: 85  ISGS--ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE----KLSIVFFDIDY 138
           ISGS   + E   +  ++  LS  D L+GL N + F + LG         +S+V  D+D 
Sbjct: 329 ISGSNRDITERKQAEEQLRYLSTHDNLTGLYNRAYFDAELGRLAGGREFPISVVMADVDG 388

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
            K++ND  GH VGD+++   +  L+  F +   V R+GG+EFA    G+     + +  D
Sbjct: 389 LKEVNDRHGHAVGDRLLQEAAKVLLAAFRSDDVVARIGGDEFAVLLPGAD----SAMVKD 444

Query: 199 LRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAK--KSGRN 253
           + K +E+ Q  ++   S+  +++S G A     E +  ++  AD+ +Y  K  + GR 
Sbjct: 445 ILKRVESCQAGVNRANSVFRLSLSLGTATAETGESLGEVLKLADERMYREKFGRKGRG 502


>gi|114565894|ref|YP_753048.1| diguanylate cyclase/phosphodiesterase [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114336829|gb|ABI67677.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 319

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 97/199 (48%), Gaps = 23/199 (11%)

Query: 76  ITISLLLGYIS-----GSILKELFISYNRISQLSRI-------DCLSGLLNHSAF----- 118
           + IS L G+ S       ++KE+   Y ++    +I       D L+GL N   F     
Sbjct: 114 LQISDLTGHYSRVKQLKHMIKEIDSEYEQVRAAEKINRFKAFHDALTGLPNRYLFYDRLD 173

Query: 119 --ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
             IS      E L++VF D+D FK++NDN+GH  GD ++  ++++L  +      + RLG
Sbjct: 174 NAISMAQRNKEMLAVVFLDLDGFKEVNDNYGHEAGDHLLQVVAERLRELLRESDTLARLG 233

Query: 177 GEEFA-AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS- 234
           G+EF        SE +AA +A  +   + N    +  G  +++T S GI+        S 
Sbjct: 234 GDEFLFIFPQIKSEADAATIAKKILTALANP--FMFWGREVYLTASIGISLYPKDAKNSR 291

Query: 235 TIIYRADQALYVAKKSGRN 253
            +I +AD A+Y  K SG+N
Sbjct: 292 NLINKADLAMYQVKNSGKN 310


>gi|306841736|ref|ZP_07474422.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2]
 gi|306288141|gb|EFM59528.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2]
          Length = 190

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 10/121 (8%)

Query: 72  VIISITISLLLGYISGSILKELFISY-------NRISQLSRIDCLSGLLNHSAFISSLGS 124
           +++   I++ LG    S L+EL  SY       N +++++ +D L+GLLN  +FI    +
Sbjct: 1   MLLPFLIAMPLGVFWFSRLEELERSYRTAVKRANELARVASVDPLTGLLNRRSFIQQFNA 60

Query: 125 YNEKLSIVFF---DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
            N+     +F   D+DY KQIND +GHP GD  I  ++  L     +   + R+GG+EF 
Sbjct: 61  ANKAGVRGWFLIVDVDYLKQINDQYGHPAGDDAIIAVAQALEDCLSSDSLIARIGGDEFC 120

Query: 182 A 182
           A
Sbjct: 121 A 121


>gi|213971401|ref|ZP_03399515.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           T1]
 gi|213923844|gb|EEB57425.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           T1]
          Length = 756

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 121/275 (44%), Gaps = 53/275 (19%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN-------------LSLVIISI 76
           Y  +F  +F   V  +    L  + L     L  ++ EN             L L I +I
Sbjct: 178 YSGMFHQMFRYGVSLLLGAGLLTMHLMGMRALRLVIPENAELHIPGTENSQQLGLTIAAI 237

Query: 77  TISLLLGYISGS------------------ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           T+ ++ G IS +                  +L +L  +   + Q++  D L+ L+N   F
Sbjct: 238 TLLIIAGSISAAMADKKLQGKENDLQRVNALLSQLDQARVSLQQVAHYDPLTNLINRRGF 297

Query: 119 ----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  L  +      L+++F DID+FK+IND+ GH  GD+++  +++++         
Sbjct: 298 NQIFAEKLLEHTHSKGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDV 357

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIA----- 225
           V R GG+EF         +EA  LA+   +++   +  I+ +G  + +T S GIA     
Sbjct: 358 VARFGGDEFCILLSIPDYEEARHLAH---RVMHKMKEPIALAGRRMVMTTSIGIAVFPRD 414

Query: 226 -ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              C +     ++  AD ALY +K +GRNRV  FS
Sbjct: 415 GSTCDE-----LLKHADLALYQSKGNGRNRVNFFS 444


>gi|145300080|ref|YP_001142921.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852852|gb|ABO91173.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 539

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 24/184 (13%)

Query: 89  ILKELFISYNRISQLSR----IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           ++KE    Y +   + +    +D L+ + N +A    L         YN  L +   DID
Sbjct: 360 LMKEETAEYKKRLTIQKHKLFLDSLTQVHNRAALDERLELEYKRWLRYNTPLCLAIIDID 419

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK INDN+GH  GDK +  ++  L        F+ R GGEEF             I  +
Sbjct: 420 HFKNINDNYGHMAGDKALKVVAKALQGALRDTDFIARFGGEEFVVLL-------PNINPD 472

Query: 198 DLRKIIENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
             +K +E  +  I S P       + ITIS G       +  +    RAD+ALY +K SG
Sbjct: 473 KYQKPLETLRQTIKSIPFRFRDARVEITISIGATLFREGDHTTDAFERADKALYSSKHSG 532

Query: 252 RNRV 255
           R++V
Sbjct: 533 RDQV 536


>gi|119486067|ref|ZP_01620129.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]
 gi|119456842|gb|EAW37970.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]
          Length = 346

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 101/209 (48%), Gaps = 25/209 (11%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------ 120
           +NL L  ++  +  L G        EL  +   + +L+  D L+ L N   F        
Sbjct: 140 QNLKLQQMNQELQRLAG--------ELQQANRELQRLAVTDSLTQLANRRQFDEYLIHEW 191

Query: 121 -SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGE 178
             +    + LS++  D+D+FK  ND +GHP GD  +  ++  +      P     R GGE
Sbjct: 192 LRMLREQQFLSVILCDVDFFKNYNDKYGHPAGDNCLRKVAKAICQQVQRPGDLAARYGGE 251

Query: 179 EFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGP-SIHITISAGIA---ERCHKEPI 233
           EF    L +++ E AI +A  +R+ I++  I  S    +  IT+S+G+A    + +  P 
Sbjct: 252 EF-VIILPNTQAEGAINVAEGIRQAIKSLNIPHSQSKIADCITVSSGVASVVPQANDSP- 309

Query: 234 STIIYRADQALYVAKKSGRNRVV--CFSD 260
           S +I  AD ALY AKK GR+ V+   FSD
Sbjct: 310 SNLIATADTALYEAKKKGRDCVIYKPFSD 338


>gi|327193499|gb|EGE60393.1| two-component sensor histidine kinase protein [Rhizobium etli
           CNPAF512]
          Length = 932

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 21/184 (11%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           + EL  S  +I Q++  D L+GL N + F       I    S  ++  ++  D+D+FK I
Sbjct: 462 ITELDTSRKKIHQMAFYDSLTGLPNRTLFNERLREMIGDAASAGQRAGVMLIDMDHFKAI 521

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDL- 199
           ND  GHPVGD+++  ++ ++         V RLGG+EFA     +  ++  A I +  L 
Sbjct: 522 NDTMGHPVGDELLRQVATRMKKGVRASDTVARLGGDEFAVLLPNVQDNDDLAQIASRMLA 581

Query: 200 ----RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               R ++ + +I +S    I +  + G A      P   + Y AD A+Y+AK+SGR+  
Sbjct: 582 AFGERFMLSDREIFVSCSIGISVFPNDGDA------PDDLVKY-ADSAMYLAKRSGRSNF 634

Query: 256 VCFS 259
             +S
Sbjct: 635 RFYS 638


>gi|325284705|ref|YP_004264168.1| diguanylate cyclase/phosphodiesterase [Deinococcus proteolyticus
           MRP]
 gi|324316194|gb|ADY27308.1| diguanylate cyclase/phosphodiesterase [Deinococcus proteolyticus
           MRP]
          Length = 819

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 91/174 (52%), Gaps = 9/174 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFG 147
           K+L  + + ++  +  D L+GL N + F + +    E      ++F D+D FKQ+ND  G
Sbjct: 373 KQLQTAQHTLAYRATHDALTGLANRAYFQAEVERELEAGHSFGLLFIDLDRFKQVNDTLG 432

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND-LRKIIEN 205
           H  GD+++  ++ QL  V      V R+GG+EF        +  +A ++A+  L ++ E 
Sbjct: 433 HDTGDQLLKAVARQLKQVLRPNDLVARMGGDEFTVILRNLHTSYDAEVMAHKVLNRLAEP 492

Query: 206 SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   +  ++++T S G+A      E +ST+   AD A+Y AK+ G+N V  F
Sbjct: 493 FHV---AENTLYVTASIGMAVAPQDGEDVSTLQRHADIAMYRAKREGKNSVRAF 543


>gi|317406652|gb|EFV86824.1| hypothetical protein HMPREF0005_04995 [Achromobacter xylosoxidans
           C54]
          Length = 589

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 16/165 (9%)

Query: 107 DCLSGLLNH-------SAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           D L+GL N        SA I+    +L +    L+++F D+D FK++ND FGH  GD ++
Sbjct: 163 DYLTGLPNRRQCMETLSAAIAEAEPALAARGATLAVLFLDLDRFKEVNDAFGHAEGDLLL 222

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQINISSGP 214
             ++D+L       +F  R+GG+EF      ++E+ A  LAN  L  +   S ++   G 
Sbjct: 223 CDVADRLRKFLTPSIFCARVGGDEFLLVLRDTNERAAEALANSILNSLSRPSDVH---GR 279

Query: 215 SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S+ +  S GIA      E   T++  AD A+Y AK +GR +V  +
Sbjct: 280 SLSLGASIGIALLNSPGESAETLLNYADAAMYAAKSAGRFQVRAY 324


>gi|315126116|ref|YP_004068119.1| hypothetical protein PSM_A1022 [Pseudoalteromonas sp. SM9913]
 gi|315014629|gb|ADT67967.1| hypothetical protein PSM_A1022 [Pseudoalteromonas sp. SM9913]
          Length = 1000

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 21/172 (12%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           S  ++ QL+  D L+GL N + F         ++  G Y+   ++ +FD+D FK+IND  
Sbjct: 561 SQRKMEQLAYFDTLTGLANRTFFRMQLRKSMALAERGRYS--FALFYFDLDEFKRINDTL 618

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN 205
           GH  GD+++  ++ +L         + RLGG+EFA    G   ++EA+ +A+ ++K + N
Sbjct: 619 GHDAGDQLLVEVATRLKQRLRAEDTIARLGGDEFAVLLSGIEHQKEASEVADTIQKTL-N 677

Query: 206 SQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRN 253
             I + S   I ++ S GI     +   ++    ++  AD A+Y AK  GRN
Sbjct: 678 QPIKLGSNEVI-VSASIGITLAPFDSLEED---QLLKHADLAMYEAKAKGRN 725


>gi|307720854|ref|YP_003891994.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978947|gb|ADN08982.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
          Length = 661

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 92/189 (48%), Gaps = 28/189 (14%)

Query: 93  LFISYNRISQ-------LSRIDCLSGLLNHSAFISSL------GSYNE-KLSIVFFDIDY 138
           L +++ R+ Q       LS  D LSGL N  + +  L      G  ++ + +++F D+D 
Sbjct: 221 LSMTFKRLKQEQEELYNLSTKDPLSGLYNRLSLVEKLNWLISKGKRDKNEFAMIFLDLDN 280

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LAN 197
           FK IND+ GH  GDK++ ++SD L+        V RLGG+EF        ++   + +A 
Sbjct: 281 FKNINDSKGHEFGDKILKYISDILLNATRNNDIVSRLGGDEFVVVLPDYKDENKIVEIAQ 340

Query: 198 DLRK------IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
            L++       I+N    I++   I I    G       + + T++  AD A+Y +K+ G
Sbjct: 341 RLKEKLSTPFKIDNEDYQITASMGIAIYPKDG-------DNVQTLLKNADIAMYKSKELG 393

Query: 252 RNRVVCFSD 260
           +N    F+D
Sbjct: 394 KNNFQFFTD 402


>gi|299537002|ref|ZP_07050307.1| putative signaling membrane protein [Lysinibacillus fusiformis ZC1]
 gi|298727582|gb|EFI68152.1| putative signaling membrane protein [Lysinibacillus fusiformis ZC1]
          Length = 338

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 83/165 (50%), Gaps = 18/165 (10%)

Query: 98  NRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           N +++   +D L+G+LN        H   I  +       +I+  D+D FK IND +GH 
Sbjct: 169 NDLTEQLNLDSLTGILNRRRMDQILHKLIIDKVPH-----AIILIDLDDFKSINDTYGHT 223

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+V+   +  +    G   F  R GGEEF       + ++A  LA  LR  I+ +   
Sbjct: 224 VGDEVLKAFAITMQSSVGEQGFCFRFGGEEFMVILPSMNIEDAVQLAESLR--IKQALQE 281

Query: 210 ISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRN 253
              G S  +T+SAGI A   + +  + +I  AD ALY AK+SGRN
Sbjct: 282 TVCGRS--VTMSAGITAFTPNVQSPNQLIEIADHALYKAKQSGRN 324


>gi|297539378|ref|YP_003675147.1| PAS/PAC sensor-containing diguanylate cyclase [Methylotenera sp.
           301]
 gi|297258725|gb|ADI30570.1| diguanylate cyclase with PAS/PAC sensor [Methylotenera sp. 301]
          Length = 953

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 14/176 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           + E  I  N + Q +  D L+ L N    +  L          N  +++ F D+D+FK I
Sbjct: 774 ITERKIRDNEVHQHAYFDTLTKLPNRRMLMDRLSQELSQAERDNRIVALFFLDLDHFKHI 833

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLR 200
           ND+ GH VGD ++   + +L+        V RLGG+EF    + +  +     +    LR
Sbjct: 834 NDSLGHDVGDLILKEAALRLLSCVRPNDMVSRLGGDEFVILLSEISDANYAKKVAEKVLR 893

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNR 254
           K  E   +N   G  + I+ S GIA R     I+   ++  AD A+Y +K +GRNR
Sbjct: 894 KFEEPIDVN---GKEVIISASIGIALRTGDVKITFKQLMKNADMAMYESKATGRNR 946


>gi|190894121|ref|YP_001984415.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
 gi|190699782|gb|ACE93865.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
          Length = 932

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 21/184 (11%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           + EL  S  +I Q++  D L+GL N + F       I    S  ++  ++  D+D+FK I
Sbjct: 462 ITELDTSRKKIHQMAFYDSLTGLPNRTLFNERLREMIGDAASAGQRAGVMLIDMDHFKAI 521

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDL- 199
           ND  GHPVGD+++  ++ ++         V RLGG+EFA     +  ++  A I +  L 
Sbjct: 522 NDTMGHPVGDELLRQVATRMKKGVRASDTVARLGGDEFAVLLPNVQDNDDLAQIASRMLA 581

Query: 200 ----RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               R ++ + +I +S    I +  + G A      P   + Y AD A+Y+AK+SGR+  
Sbjct: 582 AFGERFMLSDREIFVSCSIGISVFPNDGDA------PDDLVKY-ADSAMYLAKRSGRSNF 634

Query: 256 VCFS 259
             +S
Sbjct: 635 RFYS 638


>gi|89255347|ref|NP_659900.2| two-component sensor histidine kinase protein [Rhizobium etli CFN
           42]
 gi|89213301|gb|AAM54913.2| probable two-component sensor histidine kinase protein [Rhizobium
           etli CFN 42]
          Length = 932

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 21/184 (11%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           + EL  S  +I Q++  D L+GL N + F       I    S  ++  ++  D+D+FK I
Sbjct: 462 ITELDTSRKKIHQMAFYDSLTGLPNRTLFNERLREMIGDAASAGQRAGVMLIDMDHFKAI 521

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDL- 199
           ND  GHPVGD+++  ++ ++         V RLGG+EFA     +  ++  A I +  L 
Sbjct: 522 NDTMGHPVGDELLRQVATRMKKGVRASDTVARLGGDEFAVLLPNVQDNDDLAQIASRMLA 581

Query: 200 ----RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               R ++ + +I +S    I +  + G A      P   + Y AD A+Y+AK+SGR+  
Sbjct: 582 AFGERFMLSDREIFVSCSIGISVFPNDGDA------PDDLVKY-ADSAMYLAKRSGRSNF 634

Query: 256 VCFS 259
             +S
Sbjct: 635 RFYS 638


>gi|78186913|ref|YP_374956.1| diguanylate cyclase [Chlorobium luteolum DSM 273]
 gi|78166815|gb|ABB23913.1| diguanylate cyclase (GGDEF domain) [Chlorobium luteolum DSM 273]
          Length = 424

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 78/164 (47%), Gaps = 9/164 (5%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D  +GL N+  F   L         ++  +S+   DID+FK  ND  GH  GD V+  L+
Sbjct: 251 DEKTGLYNYRHFKEHLIIDVERAKRFHSNVSLAMIDIDHFKLYNDAHGHIAGDHVLEILA 310

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHI 218
             +           R GGEEFA     +  + A  ++  LRKII  + + +    PS  +
Sbjct: 311 GIIKEESRLSDIPSRFGGEEFAILFPKTDAETALDISERLRKIISATPVPHEHQQPSGQL 370

Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           T+S GIA          T+I  AD+ALY AK  GRN VV FS +
Sbjct: 371 TVSIGIATFPDDASDWYTLINNADRALYEAKAQGRNSVVTFSSL 414


>gi|238791925|ref|ZP_04635561.1| Sensory box protein [Yersinia intermedia ATCC 29909]
 gi|238728556|gb|EEQ20074.1| Sensory box protein [Yersinia intermedia ATCC 29909]
          Length = 335

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 15/200 (7%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           LE + ++N SL  +    ++ L   +  + ++L I       LS  D L+   N      
Sbjct: 140 LEKLELKNKSLEALVEERTVELRETNFRLQQQLDIK----KSLSETDVLTSAANRYLLEK 195

Query: 121 SLG-SYN------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L   YN      + LS++  D+D FK IND  GH VGD  +  + D +         +G
Sbjct: 196 VLKHEYNRAKRFCQPLSLLALDLDNFKSINDKHGHSVGDLTLTHIVDVIRNNIREIDVLG 255

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GG+EF      +   EA  +A  +R+ IE   +      +I++T+S G+ E    E  
Sbjct: 256 RWGGDEFMIVLPNTQLNEAKCIAEKIRQCIETMPVE----GNINVTMSLGVVELGQNEAQ 311

Query: 234 STIIYRADQALYVAKKSGRN 253
             ++ RAD+ LY +K +GRN
Sbjct: 312 EQLLIRADKMLYNSKAAGRN 331


>gi|95930035|ref|ZP_01312775.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
 gi|95134004|gb|EAT15663.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
          Length = 556

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 88/169 (52%), Gaps = 14/169 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSI----VFFDIDYFKQINDNFGHPV 150
           ++I   +  D L+ L N   F   LG    + ++  I    +F D+D FK++ND+ GH  
Sbjct: 383 DKIWHQAHHDSLTDLPNRVLFYQYLGDVVLHAQRQDIGAALMFVDLDCFKEVNDSLGHDY 442

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD ++  ++ +L         V R+GG+EF      +S+ +A +   +  K++  +Q+N 
Sbjct: 443 GDLLLQQVAKRLKDSVRQTDQVARIGGDEFTVLLCHTSDNQAILSVAE--KVL--NQLNR 498

Query: 211 S---SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               +G    I+ S GIA  C      T++ +AD A++ AKK+GRN+V+
Sbjct: 499 PFDLNGHQAQISGSIGIARVCKGHTTETLVRQADHAMFAAKKAGRNQVI 547


>gi|315181657|gb|ADT88570.1| sensory box/GGDEF family protein [Vibrio furnissii NCTC 11218]
          Length = 613

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 18/174 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGH 148
           +++   S  D LS + N   F     S          +E+  +   DID+FK+IND +GH
Sbjct: 444 DQLRDQSEKDGLSNIWNRRKFDQEFRSECMRVKRYPAHEQSCLAILDIDHFKRINDKYGH 503

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GDK I  ++  L        F+ R+GGEEFA     +   EA  + N LR  +     
Sbjct: 504 ARGDKTIRAVAQCLRNELRESDFLARIGGEEFAIILPHTPIDEAETVLNRLRVAV----F 559

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           ++  G    +++S G+ +    E    +  RAD ALY +K+SGRN V   +  E
Sbjct: 560 DLHQG---DLSVSGGLTDIT--EVPEEVYQRADMALYESKESGRNVVSVLTSAE 608


>gi|301383588|ref|ZP_07232006.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059985|ref|ZP_07251526.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           K40]
 gi|302132076|ref|ZP_07258066.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 763

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 121/275 (44%), Gaps = 53/275 (19%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN-------------LSLVIISI 76
           Y  +F  +F   V  +    L  + L     L  ++ EN             L L I +I
Sbjct: 185 YSGMFHQMFRYGVSLLLGAGLLTMHLMGMRALRLVIPENAELHIPGTENSQQLGLTIAAI 244

Query: 77  TISLLLGYISGS------------------ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           T+ ++ G IS +                  +L +L  +   + Q++  D L+ L+N   F
Sbjct: 245 TLLIIAGSISAAMADKKLQGKENDLQRVNALLSQLDQARVSLQQVAHYDPLTNLINRRGF 304

Query: 119 ----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  L  +      L+++F DID+FK+IND+ GH  GD+++  +++++         
Sbjct: 305 NQIFAEKLLEHTHSKGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDV 364

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIA----- 225
           V R GG+EF         +EA  LA+   +++   +  I+ +G  + +T S GIA     
Sbjct: 365 VARFGGDEFCILLSIPDYEEARHLAH---RVMHKMKEPIALAGRRMVMTTSIGIAVFPRD 421

Query: 226 -ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              C +     ++  AD ALY +K +GRNRV  FS
Sbjct: 422 GSTCDE-----LLKHADLALYQSKGNGRNRVNFFS 451


>gi|260769118|ref|ZP_05878051.1| sensory box/GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260614456|gb|EEX39642.1| sensory box/GGDEF family protein [Vibrio furnissii CIP 102972]
          Length = 613

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 18/174 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGH 148
           +++   S  D LS + N   F     S          +E+  +   DID+FK+IND +GH
Sbjct: 444 DQLRDQSEKDGLSNIWNRRKFDQEFRSECMRVKRYPAHEQSCLAILDIDHFKRINDKYGH 503

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GDK I  ++  L        F+ R+GGEEFA     +   EA  + N LR  +     
Sbjct: 504 ARGDKTIRAVAQCLRNELRESDFLARIGGEEFAIILPHTPIDEAETVLNRLRVAV----F 559

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           ++  G    +++S G+ +    E    +  RAD ALY +K+SGRN V   +  E
Sbjct: 560 DLHQG---DLSVSGGLTDIT--EVPEEVYQRADMALYESKESGRNVVSVLTSAE 608


>gi|223039312|ref|ZP_03609601.1| diguanylate cyclase [Campylobacter rectus RM3267]
 gi|222879373|gb|EEF14465.1| diguanylate cyclase [Campylobacter rectus RM3267]
          Length = 355

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 90/178 (50%), Gaps = 7/178 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQ 141
           S  I +++      +++L+  D L+GLLN +AF   +  +     +++S+V  DID FK+
Sbjct: 171 SAKIRQDMLERQESLNELANKDPLTGLLNRNAFHVQVSPHINLLEKEVSVVLCDIDDFKK 230

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH  GD+ +  ++  +         V R GGEEF     G + + +  +   +R+
Sbjct: 231 LNDTYGHAFGDEALKTVALTIKNSLREGDLVYRWGGEEFLIFLSGINLENSRRIFERIRR 290

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
            I  +++    G S   + + G+     K  + +   I +AD  LY  KKSG+N+VV 
Sbjct: 291 KIAETELKF-DGKSAKTSATFGLVNFNPKALKDVEAAIKQADILLYNGKKSGKNKVVA 347


>gi|189424951|ref|YP_001952128.1| diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ]
 gi|189421210|gb|ACD95608.1| diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ]
          Length = 771

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 21/157 (13%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+GL N +AF   L  ++++    L+++  D+D  KQ+ND  GH  GD+++   ++ L
Sbjct: 619 DSLTGLYNRAAFEHHLSRFDKEGPFPLAVIMADLDGLKQVNDTQGHEAGDRLLQAAAELL 678

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII-------ENSQINISSGPS 215
            + F T   V R+GG+EFA    G  E+ A    N L++ I       EN Q+ +S G  
Sbjct: 679 SLSFRTNDIVARIGGDEFALLLPGIPEEMAKNKFNRLQRQIELFTELPENPQVALSCG-M 737

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           I +T    + E          + +ADQ +Y  KK+ +
Sbjct: 738 IQVTGPGQLLE---------AVKQADQLMYQQKKARK 765


>gi|262403434|ref|ZP_06079992.1| GGDEF family protein [Vibrio sp. RC586]
 gi|262349938|gb|EEY99073.1| GGDEF family protein [Vibrio sp. RC586]
          Length = 572

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 13/185 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNE---KLSIVFFDIDYFKQIND 144
           KEL     R++Q +R D L+ L N  A   FI      ++    +++   D+D FK +ND
Sbjct: 387 KELQSLNQRLAQAARTDSLTQLYNRRAYEEFIQECWQTHQGQLPITLAVMDLDGFKAVND 446

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GH VGD+V+   S+ L   F  P + + RLGG+EFA      S++E       L +II
Sbjct: 447 QLGHQVGDEVLRLFSNLLRETFHHPSVRIARLGGDEFAVIM---SDREPPSHLALLAQII 503

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRVVCFSDI 261
              ++  +      +++S G A       ++T  +   ADQALY AK SG+ ++V +   
Sbjct: 504 TEFELKTAQRFQ-DLSVSIGAASVVPNAEMNTDSFFSLADQALYQAKASGKKQLVVYPLA 562

Query: 262 ENNTC 266
           +N+  
Sbjct: 563 QNDPA 567


>gi|238787036|ref|ZP_04630836.1| hypothetical protein yfred0001_5190 [Yersinia frederiksenii ATCC
           33641]
 gi|238724824|gb|EEQ16464.1| hypothetical protein yfred0001_5190 [Yersinia frederiksenii ATCC
           33641]
          Length = 572

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 13/176 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           +L  +  R+   +R D L+ L N   F   L             LS++  DIDYFK  ND
Sbjct: 389 KLIKANRRLEIQARTDSLTKLPNRREFKKVLAHEFMRAKRSGSPLSVLMIDIDYFKNFND 448

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  L          V R GGEEFAA    + ++ A+++A  + + I
Sbjct: 449 CYGHISGDACLRLVARALRKSLKRSTDIVARYGGEEFAAILPDTDQKGASLVAEHILQSI 508

Query: 204 ENSQINISSGPSIHITISAGIA-ERCHKEPIST----IIYRADQALYVAKKSGRNR 254
               I  S      +TIS G+   + H+    T    ++  ADQALY +KK+GRN+
Sbjct: 509 RAMGIKHSDSKFRKVTISLGVTVYQAHQHTTITDQADLMLTADQALYYSKKNGRNQ 564


>gi|163816146|ref|ZP_02207514.1| hypothetical protein COPEUT_02330 [Coprococcus eutactus ATCC 27759]
 gi|158448566|gb|EDP25561.1| hypothetical protein COPEUT_02330 [Coprococcus eutactus ATCC 27759]
          Length = 1039

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 7/191 (3%)

Query: 70   SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---- 125
             +VI+ ++ +  L  ++ +   +  +         R D L+GLLNH+AF S +       
Sbjct: 844  EIVIVDVSSTYALKMLTDAEQNKADVRLRNWENTYRTDPLTGLLNHAAFRSDMEQRLLEC 903

Query: 126  NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
                 ++  D+D FKQ ND +GH  GDK +  ++  L           R+GG+EFAA   
Sbjct: 904  THTAVMIMMDVDRFKQYNDTYGHHNGDKYLVLVAQALQAALRGDDHACRMGGDEFAAMLF 963

Query: 186  GSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQAL 244
             +      ++    ++I +   + + +      I++ A IA    +   + +   AD AL
Sbjct: 964  FNKSVSDDVIRERAQQIFDKVNLTVKATEGGTGISMGAVIART--ELTFNEMYEEADNAL 1021

Query: 245  YVAKKSGRNRV 255
            Y  K+SGR R+
Sbjct: 1022 YDVKESGRGRI 1032


>gi|149187184|ref|ZP_01865482.1| putaitive GGDEF domain [Vibrio shilonii AK1]
 gi|148838720|gb|EDL55659.1| putaitive GGDEF domain [Vibrio shilonii AK1]
          Length = 456

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 7/156 (4%)

Query: 99  RISQLS-RIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           ++++L+ ++D L+GL N +    S   Y    + L+++  D D  K INDN+GH VGD+ 
Sbjct: 302 KLAELAIKLDELTGLYNRAILRDSGIKYAIEKKGLAVIVIDGDKLKLINDNYGHHVGDEA 361

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           I +++  +   F    ++ R GG+EF     G   Q A  LAN L + I +     +   
Sbjct: 362 IVYIAQCMRQCFRESDYLIRSGGDEFLVLLPGCGLQTAERLANTLSRTIRSKTYGAN--- 418

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
            + + IS G+     KE +S+ I RAD  LY  K++
Sbjct: 419 KLTLDISLGVTVLQEKESLSSAIKRADALLYQVKRN 454


>gi|154249685|ref|YP_001410510.1| diguanylate cyclase with PAS/PAC sensor [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153621|gb|ABS60853.1| diguanylate cyclase with PAS/PAC sensor [Fervidobacterium nodosum
           Rt17-B1]
          Length = 538

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 79/168 (47%), Gaps = 13/168 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ + S  D L+GL N   F       I     Y  K S++  D+D  KQIND FGH  G
Sbjct: 367 KLEEASFKDPLTGLYNRRYFMIMLKNEIRRAKRYGTKSSVMMIDLDGLKQINDTFGHDKG 426

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D  I  L+  ++          R GG+EFA     +   +A ++   L++ +E  + N  
Sbjct: 427 DLAIKTLAQAMISSTRVTDVCARFGGDEFAILLPQTPVDKAQVIVYRLKETLE--KFNSE 484

Query: 212 SGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S     I  SAGI    +    E I+T + RAD+ LY AK  G+N ++
Sbjct: 485 STEKFKIHFSAGITSIIKADDDEGINT-LKRADELLYKAKSLGKNLII 531


>gi|257469179|ref|ZP_05633273.1| putative signaling protein [Fusobacterium ulcerans ATCC 49185]
 gi|317063427|ref|ZP_07927912.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689103|gb|EFS25938.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 445

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 15/156 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           R+ ++S  D L+GL N + +IS+L        E L I++ D++  K IND +GH  GD++
Sbjct: 292 RLEEMSFTDMLTGLGNRNKYISTLEEIEKNLPETLGIIYMDLNGLKIINDTYGHTYGDEM 351

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +++ L+  F   +F  R+GG+EF      +SE++       LRKII+  +       
Sbjct: 352 LKRIAEILINTFKEDVF--RIGGDEFVVVCNNTSEEKFKEDIKYLRKIIDLDK------- 402

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
              +++S G      K  +   I RAD+ +Y  KK+
Sbjct: 403 --DLSVSIGTDWNTGKIMVDKQIARADKLMYAEKKN 436


>gi|152985451|ref|YP_001349603.1| hypothetical protein PSPA7_4249 [Pseudomonas aeruginosa PA7]
 gi|150960609|gb|ABR82634.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 434

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 18/175 (10%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           ++ L+  D L+ L N + F   L         + E+L+++F D D FK+IND  GH  GD
Sbjct: 244 LAHLAHHDSLTNLPNRAFFEGRLSRALRDAMQHREQLAVLFIDSDRFKEINDRLGHAAGD 303

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQ--I 208
            V+  ++ ++         V RLGG+EFA   A L S      I  N    II + Q  I
Sbjct: 304 TVLVNIAMRIRGQLRESDLVARLGGDEFAVLLAPLASGSDALRIADN----IIASMQAPI 359

Query: 209 NISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR--NRVVCFSD 260
            ++ G ++  +++ GIA    H +  + +++ AD A+Y+AK+  R   R+   +D
Sbjct: 360 RLADGSTVSTSLTIGIALYPDHADNPAALLHDADMAMYIAKRQARGSRRLADLND 414


>gi|88705562|ref|ZP_01103272.1| GGDEF family protein [Congregibacter litoralis KT71]
 gi|88700075|gb|EAQ97184.1| GGDEF family protein [Congregibacter litoralis KT71]
          Length = 981

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 65/212 (30%), Positives = 95/212 (44%), Gaps = 25/212 (11%)

Query: 69  LSLVIISITISLLLGYISGSI--------------LKELFISYNRISQLSRIDCLSGLLN 114
           L + +I++ +SLL  Y S S                +EL  +  R+   SRID L+G+ N
Sbjct: 755 LGVALIALLVSLLQRYQSRSARQREQQLRQLVDLRTEELRDALVRVEANSRIDSLTGVAN 814

Query: 115 HSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVF 166
                  L +           +SI+  DID FKQ ND+ GH  GD  +  ++  +   + 
Sbjct: 815 RRHLEEHLNATWSMSRRTGTPVSILMLDIDLFKQYNDSLGHAAGDDCLRTIAQAIKGKLL 874

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIA 225
                + R GGEEF      +    A   AN + + +    + + +S  S H+TIS G A
Sbjct: 875 REHDMLARYGGEEFVVVLYDTDAAGAVRTANRILECVRALALQHPASQVSEHVTISIGCA 934

Query: 226 ERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
               KE      +I  AD+ALY AK  GRNRV
Sbjct: 935 SMGDKERDDPHRLIDLADKALYEAKAKGRNRV 966


>gi|317489088|ref|ZP_07947613.1| GGDEF domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|316911820|gb|EFV33404.1| GGDEF domain-containing protein [Eggerthella sp. 1_3_56FAA]
          Length = 620

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGDKVIA 156
           +++ S++D L+   N  AF   + +   + S   +   D+D FKQ+ND +GH +GD+V+ 
Sbjct: 462 LTRKSQMDGLTKTFNKMAFQEKMAALLPETSRGLLFVIDMDRFKQVNDEYGHSMGDRVLE 521

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++  L+ VF     VGR+GG+EF A  +G+++ +A I A   R+ + +S    S    +
Sbjct: 522 EVARSLLDVFRHRDPVGRVGGDEFVAFLVGAND-DAVIEAK--REALSSSIAEASRSLGV 578

Query: 217 HITISAGIAERCHKEPISTIIYR-----ADQALYVAKKSGR 252
            I +S G+A    + P     Y+     AD+A+Y  K  GR
Sbjct: 579 PIALSVGVA----RYPQDGATYQELFDAADRAMYDEKNEGR 615


>gi|332994704|gb|AEF04759.1| sensory box protein [Alteromonas sp. SN2]
          Length = 723

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 86/167 (51%), Gaps = 7/167 (4%)

Query: 99  RISQLSRIDCLSGLLNHSA----FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           R+ QL+  D L+GL N SA    F     S+ + L +VF D+D FK IND  GH  GD  
Sbjct: 290 RLKQLALYDELTGLNNRSALRDIFQQLFDSHGDFL-VVFIDLDGFKAINDTAGHEKGDVE 348

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  L   FG    V R GG+EF A     + + A   +  L ++IE   + ++   
Sbjct: 349 LQRVAALLTASFGPFGDVARWGGDEFIAVLSRQNIEWAVEKSEALIRLIEEDVV-VTKKV 407

Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            + ++ S GIA+   H + I  ++  AD A+Y AKK G+ +V  + D
Sbjct: 408 ELKLSASIGIAKFPEHNDSIEGVVQCADAAMYHAKKLGKGQVNVYED 454


>gi|313681601|ref|YP_004059339.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM
           16994]
 gi|313154461|gb|ADR33139.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM
           16994]
          Length = 428

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 14/167 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
            RI  LS  D L+ L N   F        +      +    ++  D+D+FK++ND FGH 
Sbjct: 264 KRIELLSITDPLTKLFNRHKFNEVFENMVLRRHWDEHRTFGLIIADVDHFKRVNDTFGHQ 323

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+  ++        T   + R GGEEF         ++A  +A  LR  +E     
Sbjct: 324 SGDRVLIEVAHIFSQTIRTGDILARWGGEEFVCLLPDVDREKALYVAEKLRLAVEQLHF- 382

Query: 210 ISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               P +  +T S G+      +   ++++RAD +LY AK++GRNRV
Sbjct: 383 ----PDVGTVTSSFGVTIFASGDTQESMMHRADLSLYKAKENGRNRV 425


>gi|269961827|ref|ZP_06176184.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833405|gb|EEZ87507.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 648

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 46/206 (22%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN---------HSAFISSL 122
           V++++T++ +L     +           + QLS +D L+ L N         H   + + 
Sbjct: 460 VVLALTVTKVLATQRKN---------QELEQLSLLDPLTQLHNRRYYYAQIDHPEHLDAK 510

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
             Y     +V FDID FKQ+ND  GH  GD+++   +++L V   +   + R GGEEF  
Sbjct: 511 AEYR----VVLFDIDNFKQVNDVHGHETGDRILEGFAERLRVHVQSQELLIRWGGEEFLM 566

Query: 183 AALGSSEQEAAILANDLRKIIENSQINI------SSGPSIHITISAGIAERCHKEPISTI 236
               +         +DL K +E  + +I      +   S+++T S G++   H   I T 
Sbjct: 567 LLKTT---------DDLAKRLEEMRQHIGDVSFETEESSLNVTTSIGVS---HGGLIETF 614

Query: 237 IY------RADQALYVAKKSGRNRVV 256
            Y      RAD++LY AK++G+++VV
Sbjct: 615 TYNDEYFRRADKSLYEAKRNGKDQVV 640


>gi|264677842|ref|YP_003277748.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262208354|gb|ACY32452.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 398

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 85/165 (51%), Gaps = 10/165 (6%)

Query: 107 DCLSGLLNHSAFISSLGSY--NEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ LLN  AF+ +  S   +++L   ++V  DID+FK INDN+GH  GD+V+  L+  
Sbjct: 230 DSLTRLLNRRAFMEAAESRLADQRLVPWAVVAVDIDHFKYINDNWGHAAGDQVLQQLAQL 289

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQ--EAAILANDLRKIIENSQINISSGPSIHIT 219
           L         V R GGEEF    L S  Q  EA  +   +R  ++ SQ+       + +T
Sbjct: 290 LTQQVRDCDLVARFGGEEF--VLLLSRVQLFEAQAIVERVRDRLQ-SQVLGGLAAQLRVT 346

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            S GIA     +     + RAD  LY AKK+GR+ V+  +  E+ 
Sbjct: 347 ASFGIAALSSAQDFEQALARADALLYQAKKAGRDCVMSSAQDESE 391


>gi|260557942|ref|ZP_05830155.1| WspR [Acinetobacter baumannii ATCC 19606]
 gi|260408733|gb|EEX02038.1| WspR [Acinetobacter baumannii ATCC 19606]
          Length = 593

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 9/164 (5%)

Query: 99  RISQLSRIDCLSGLLNH---SAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152
           ++  ++  D L+G+ N    S ++  + SY +K S   ++  DID FK +ND +GH VGD
Sbjct: 430 QLKNIANTDPLTGVSNRLALSEYLKIVESYPQKFSQTCLMIIDIDRFKHVNDQYGHIVGD 489

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
           +VI  ++DQL         + R GG+EF          +A +LA  +R  I   +I++S 
Sbjct: 490 QVIRRIADQLKANVRASDLIVRYGGDEFLILLEQVQFLDARLLAEKIRIAISLEEIDLSG 549

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   +H+++S G A          ++  AD++L  AK  GRN V
Sbjct: 550 TQEKLHVSVSIGFA--IGATSWMELLENADRSLLRAKARGRNVV 591


>gi|218440595|ref|YP_002378924.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Cyanothece sp.
            PCC 7424]
 gi|218173323|gb|ACK72056.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Cyanothece sp.
            PCC 7424]
          Length = 1262

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 14/182 (7%)

Query: 87   GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            G + ++L  +   + +LS +D L+ + N   F          L    + LS++  D+D+F
Sbjct: 1079 GELYQQLESANLELKKLSCLDGLTQVANRHRFDMYLDQEWRRLMRSQQFLSLILCDVDHF 1138

Query: 140  KQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILAND 198
            K  ND +GH  GD+ +  ++  +    G P   V R GGEEFA     +  + A  +A  
Sbjct: 1139 KGYNDTYGHLAGDQCLQQVAQVIKNAVGRPADLVARYGGEEFAIILPDTPLRGALYVAEQ 1198

Query: 199  LRKIIENSQINISSGPSIH--ITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNR 254
            +R+ ++   + I    S H  +T+S+G+A       +S   +I  AD+ALY AK +GRN+
Sbjct: 1199 IRQQVQ--YLTIPHPQSTHQWVTLSSGVASFIPSAALSPKALINAADEALYQAKANGRNQ 1256

Query: 255  VV 256
            VV
Sbjct: 1257 VV 1258



 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 80/168 (47%), Gaps = 18/168 (10%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--KLSIVFFDIDYFKQINDNFGHPVGDK 153
           SY+ I+QL        + NH   ++ + + N+   L +V  D++ FK+IND+ GH VGD 
Sbjct: 415 SYDVITQLPN----GIIFNHRLSLALVDAVNQGNMLGVVILDLNQFKRINDSLGHGVGDF 470

Query: 154 VIAFLSDQLVVVFGT-----PMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENS 206
           ++  + D+L     T     P+ + R  G  F    + L  S++   +    L    E  
Sbjct: 471 LLTKVRDRLQNALDTYSIFNPL-LARWHGARFIILLSKLSYSDESVMVCQKLLNDFQEPF 529

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRN 253
            +      +I++  S GIA   +    + I+ + A+ A+Y AKK G+N
Sbjct: 530 YVQ---SQAIYLGASLGIALAPYDGDTAEILLKNAESAMYEAKKQGKN 574


>gi|153871118|ref|ZP_02000369.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152072417|gb|EDN69632.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 866

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 11/158 (6%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+ + N + F       +S    Y  +LS++  DID FK IND +GH  GD V+   
Sbjct: 701 IDGLTKVYNRNYFDMYLAQEVSRAKRYKRELSLIITDIDLFKNINDTYGHLTGDTVLQEF 760

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  ++        V R GGEEF      +  +   I+A  + + I+            HI
Sbjct: 761 TQIIMQQCRRSDLVARFGGEEFIILLPETPLKGGTIVAERMCQRIDAHIFQEVE----HI 816

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T S G+A          ++ RAD ALY AKK+GRN+VV
Sbjct: 817 TASFGVASLITDRDGRELLRRADSALYQAKKNGRNQVV 854


>gi|327481458|gb|AEA84768.1| GGDEF domain-containing protein [Pseudomonas stutzeri DSM 4166]
          Length = 396

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 90/177 (50%), Gaps = 13/177 (7%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDI 136
           +++ ++++E      R + LS  D L+G+ N  +FI +         +  E ++++  D+
Sbjct: 200 FVTLAMVRERAEQQYRHASLS--DPLTGIGNRRSFIDAGQALLQRCRARGEPVTLLLCDL 257

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK++ND FGH  GD+ +      +          GR+GGEEF A  L  ++   A++ 
Sbjct: 258 DFFKRLNDTFGHQAGDRALIDFGQVIARRMRRQDVFGRIGGEEF-ACLLADAD---ALIG 313

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            ++ + I      +       +++S G+A    +  +  ++ +AD+ALY AK +GRN
Sbjct: 314 REVAERIRGEFAAMPFAEQGQLSVSIGVATTTSRYELDELMAQADRALYAAKAAGRN 370


>gi|330810152|ref|YP_004354614.1| Diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378260|gb|AEA69610.1| putative Diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 324

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 7/159 (4%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q++ +D L+ L N   F       ++     +   +++FFD++ FK IND +GH  GD  
Sbjct: 166 QMASMDELTLLSNRRGFRTLAQHALNVCDRLSRPATLLFFDLNDFKPINDRYGHAEGDNA 225

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   +D L + F     +GRLGG+EF A   GSS  E A +   L++I++     +  G 
Sbjct: 226 LKTFADVLRIAFRESDVIGRLGGDEFVALLTGSSHVEIAAIMARLQEILDERNAMLQRGY 285

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            I  ++     +    + I  ++  AD A+Y  K++ R+
Sbjct: 286 DIRFSVGQIEYDPQRHQSIDMLLADADAAMYAQKQALRS 324


>gi|293606971|ref|ZP_06689316.1| sensory box/GGDEF/GAF/EAL domain protein [Achromobacter piechaudii
           ATCC 43553]
 gi|292814631|gb|EFF73767.1| sensory box/GGDEF/GAF/EAL domain protein [Achromobacter piechaudii
           ATCC 43553]
          Length = 935

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 90/177 (50%), Gaps = 15/177 (8%)

Query: 102 QLSRI---DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           QL R+   D L+GL N           I+        L +V  D+D FK++ND  GH VG
Sbjct: 382 QLERVAHYDLLTGLPNRLLLGDRLKQAIAQTRRRGMHLVVVLIDLDGFKKVNDQHGHAVG 441

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DK+++ LS ++  V      + RLGG+EF A  +   +   ++   D  ++IE +   + 
Sbjct: 442 DKLLSVLSRRMTQVLREGDTLARLGGDEFVAVLVDLPDISLSVPILD--RLIEVAAQPVP 499

Query: 212 SGPSI-HITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            G ++  ++ S G++     E I    ++ +ADQA+Y AK++G+NR   F   ++ T
Sbjct: 500 IGDALCEVSASIGVSYYPQAEDIDADQLLRQADQAMYFAKQAGKNRYHVFDTEKDRT 556


>gi|225871850|ref|YP_002753304.1| GGDEF domain protein [Acidobacterium capsulatum ATCC 51196]
 gi|225791908|gb|ACO31998.1| GGDEF domain protein [Acidobacterium capsulatum ATCC 51196]
          Length = 404

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 14/155 (9%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D +SG LN           +     + + LS+   DID+FK++ND  GH  GD  +   
Sbjct: 234 LDFVSGTLNRRGIEQIMEVEMERCRRHGQPLSLALLDIDHFKRLNDTQGHAAGDLALVQA 293

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           ++ +         VGR GG+EF      +S + A  + N +R+        ++    +  
Sbjct: 294 ANLIRESLRPYDQVGRYGGDEFLLVLPSTSTESAEGILNRIRE-------RVARNHPLRC 346

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           T+SAG+     ++ +++++ RAD ALY AK  GRN
Sbjct: 347 TLSAGLTALIPRDDMASLLARADNALYDAKTDGRN 381


>gi|225850131|ref|YP_002730365.1| signal transduction response regulator [Persephonella marina EX-H1]
 gi|225645985|gb|ACO04171.1| signal transduction response regulator [Persephonella marina EX-H1]
          Length = 636

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 24/171 (14%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +YNR    + ++ ++ LLN +++            +   D+D FK+IND +GH VGD V+
Sbjct: 233 TYNR----NYLEDMASLLNPASY-----------HVALIDLDDFKKINDTYGHDVGDLVL 277

Query: 156 AFLSDQLV-VVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAI-LANDLRKIIENSQINISS 212
             +++ +   V      V R GGEEF      G  +++A+I  A  L + I N +I+I +
Sbjct: 278 KKIAETIKSSVRKDEDIVIRYGGEEFLVLIKAGRKDKKASINAAERLLRDIRNRKIDI-N 336

Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           G  I +T S G+    ER H   I   I ++D ALY AK +G+NR+  +S+
Sbjct: 337 GEEISVTASIGLNIYTERSH--SIYDAIKKSDIALYQAKANGKNRIEIYSE 385


>gi|197119088|ref|YP_002139515.1| response receiver-modulated diguanylate cyclase [Geobacter
           bemidjiensis Bem]
 gi|197088448|gb|ACH39719.1| response receiver-modulated diguanylate cyclase [Geobacter
           bemidjiensis Bem]
          Length = 314

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 118/256 (46%), Gaps = 25/256 (9%)

Query: 18  NLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI------LVENLSL 71
            ++  +P T ++  +   S+  A     A  + + +   PF  L+ I        E   L
Sbjct: 65  EIKEHNPDTQVVIMTSHASLDSALTALRAGAYDYLV--KPFESLDLISAVAGRAAEKARL 122

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
           V  +  +   L   +   LKE  ++   + +L+  D L+ L NH  F       ++    
Sbjct: 123 VTQNRELLEQLTRANAE-LKEANLA---LKELAVHDGLTALYNHRYFEEAFVLEVARSKR 178

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           Y ++ S++F D+D FK+ ND  GHP GD ++  L+  +           R GGEEF    
Sbjct: 179 YGKQCSLIFMDVDNFKRYNDTNGHPQGDALLKTLAQLMTTHLRICDTAARYGGEEF-VLL 237

Query: 185 LGSSEQEAAI-LANDL-RKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRA 240
           L  + +EAA+ +A +L R++ E+      + P   +TIS G+A   R   +    + + A
Sbjct: 238 LPETPKEAALGVAEELRRRVAEHPFPGGETQPLGKVTISIGVAAYPRDGMDAPELLDF-A 296

Query: 241 DQALYVAKKSGRNRVV 256
           DQ LY AK SG+N VV
Sbjct: 297 DQLLYKAKNSGKNMVV 312


>gi|78777708|ref|YP_394023.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78498248|gb|ABB44788.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM
           1251]
          Length = 416

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 15/177 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           K+L I+  R+   S  D L+ L N   F       I         ++ +  DIDYFKQ N
Sbjct: 223 KKLKIANKRLESASYTDSLTSLHNRRYFNMVYEREIKRAKRNYTYITFMMLDIDYFKQYN 282

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSE----QEAAILAND 198
           D +GH  GD  +  ++     +   P  FV RLGGEEF      +SE      A  + N 
Sbjct: 283 DTYGHVKGDVALKSVASVFKELLKRPGDFVFRLGGEEFGILLTDTSEVNTITTAQNICNA 342

Query: 199 LRKI-IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           ++++ IE+    I +  +I I ++  +A+    E +  +I +AD+ LY AK+ GRNR
Sbjct: 343 VKELKIEHEASKIDTFLTISIGVACCVADSALDEEV--LINKADEMLYSAKEGGRNR 397


>gi|23500728|ref|NP_700168.1| GGDEF domain-containing protein [Brucella suis 1330]
 gi|256015764|ref|YP_003105773.1| GGDEF domain protein [Brucella microti CCM 4915]
 gi|23464380|gb|AAN34173.1| GGDEF domain protein [Brucella suis 1330]
 gi|255998424|gb|ACU50111.1| GGDEF domain protein [Brucella microti CCM 4915]
          Length = 369

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 9/164 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF--ISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGD 152
           N + +    D L+GLLN       + L  +  +     ++  DID+FK IND +GHPVGD
Sbjct: 190 NELQRERDSDPLTGLLNRRGLERQADLRLHTPQCLSYGVIIADIDHFKAINDAYGHPVGD 249

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-IS 211
           +V+   +  L         VGR+GGEEF     G++E E   L N L  ++     + + 
Sbjct: 250 QVLVEFARILSSASKDHAIVGRVGGEEFVLLVSGTAE-ECEALGNRLCGLVARHAFSKLP 308

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +G    +T S GIA     E +     RAD AL   K  GRNRV
Sbjct: 309 AGQK--VTSSFGIAMVRSGETLWETAARADLALMRVKNLGRNRV 350


>gi|85703538|ref|ZP_01034642.1| diguanylate cyclase, putative [Roseovarius sp. 217]
 gi|85672466|gb|EAQ27323.1| diguanylate cyclase, putative [Roseovarius sp. 217]
          Length = 336

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 12/158 (7%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL N  A    +  L    +  +++  D+D+FKQ+ND  GH  GD V+  ++++L+
Sbjct: 167 DTLTGLRNRRALDHVLDRLMQSEQDFALLHLDLDFFKQVNDTLGHAAGDHVLQVVAERLL 226

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL--RKIIENSQINISSGPSIHITIS 221
                   + R+GG+EF    LG ++        DL  R I    +  +       I+ S
Sbjct: 227 TEVRADDLIARVGGDEFVILLLGMTDHAP---TKDLATRMIARLQEPVVFHAQECRISAS 283

Query: 222 AGIAERCH---KEPISTIIYRADQALYVAKKSGRNRVV 256
            G+   C     EP+  ++  AD ALY  K SGR R +
Sbjct: 284 IGVTLSCDYDIPEPVR-MMADADLALYAVKASGRGRAI 320


>gi|261212236|ref|ZP_05926522.1| hypothetical protein VCJ_002510 [Vibrio sp. RC341]
 gi|260838844|gb|EEX65495.1| hypothetical protein VCJ_002510 [Vibrio sp. RC341]
          Length = 684

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGS--YNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + +D L+GL N   F   L    +NE  L +++ DID FK IND+ GH +GDKVI  ++ 
Sbjct: 256 AHMDSLTGLYNRHGFTKRLEQLIHNETPLVMLYLDIDNFKNINDSLGHHIGDKVIKEVAA 315

Query: 161 QLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           +L  +      +G LGG+EF          + A +LA+ +  +I N   ++    S  + 
Sbjct: 316 RLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLI-NQPFDLHHF-SKRLA 373

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +           ++  AD A+Y AK+ GRNR++ F+D  N   
Sbjct: 374 CSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEA 421


>gi|148558282|ref|YP_001257918.1| GGDEF domain-containing protein [Brucella ovis ATCC 25840]
 gi|148369567|gb|ABQ62439.1| GGDEF domain protein [Brucella ovis ATCC 25840]
          Length = 369

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 9/164 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF--ISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGD 152
           N + +    D L+GLLN       + L  +  +     ++  DID+FK IND +GHPVGD
Sbjct: 190 NELQRERDSDPLTGLLNRRGLERQADLRLHTPQCLSYGVIIADIDHFKAINDAYGHPVGD 249

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-IS 211
           +V+   +  L         VGR+GGEEF     G++E E   L N L  ++     + + 
Sbjct: 250 QVLVEFARILSSASKDHAIVGRVGGEEFVLLVSGTAE-ECEALGNRLCGLVARHAFSKLP 308

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +G    +T S GIA     E +     RAD AL   K  GRNRV
Sbjct: 309 AGQK--VTSSFGIAMVRSGETLWETAARADLALMRVKNLGRNRV 350


>gi|152998842|ref|YP_001364523.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|151363460|gb|ABS06460.1| diguanylate cyclase [Shewanella baltica OS185]
          Length = 389

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPV 150
           ++I  L+  D L+GL N  A    L + +++        S++  D+D+FK+IND +GH  
Sbjct: 222 SKIRMLAERDQLTGLWNRRAMHKFLNNIHQRWLRDNVPYSMILLDLDHFKEINDQYGHDA 281

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD  +   +     V      + R GGEEF      +    A  +A  L ++++++   +
Sbjct: 282 GDLALLTAARLFGSVLRENDALCRHGGEEFLVILPTTDAPAARAVAEKLHQVLKDNSF-V 340

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             G +I I  S G A          ++ +ADQA+Y AK  GR+R+
Sbjct: 341 CQGVTIKIHASLGYATIYQGCQPDKLLIQADQAMYRAKSEGRDRI 385


>gi|6759486|emb|CAB69812.1| YkoW protein [Bacillus cereus ATCC 14579]
          Length = 892

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 453 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 512

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH +GD ++  ++ +L     +   V R GG+EF         +++AI   +    I N
Sbjct: 513 LGHELGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 572

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I  G  + IT S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 573 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 626


>gi|52841587|ref|YP_095386.1| inner membrane protein PLUS sensory box protein LssE [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52628698|gb|AAU27439.1| inner membrane protein PLUS sensory box protein LssE [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 792

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 12/164 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R++  +  D L+GL N +A    L          N  LS++F DID FK IND+ GH  G
Sbjct: 352 RLAYQANHDSLTGLPNRTALYDRLDHAINYCKRLNTSLSVLFLDIDNFKLINDSLGHDAG 411

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++   S +L         V R GG+EF    + +  ++  ++A ++ K +    I + 
Sbjct: 412 DILLYEFSRRLKGCIRHSDTVARFGGDEFVLLLMTTEPKDVILIAQNILKAVAQP-IKLP 470

Query: 212 SGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRN 253
           +   I +T S GI+    K+ I  ST++  +D A+Y+AKK GRN
Sbjct: 471 TQEVI-VTTSIGIS-LFPKDGIDASTLLKNSDTAMYLAKKEGRN 512


>gi|308048315|ref|YP_003911881.1| diguanylate cyclase/phosphodiesterase [Ferrimonas balearica DSM
           9799]
 gi|307630505|gb|ADN74807.1| diguanylate cyclase/phosphodiesterase [Ferrimonas balearica DSM
           9799]
          Length = 822

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 95/173 (54%), Gaps = 13/173 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           N + +++ +D L+GL N + F       + S+G  +++++++F D+D FK++ND  GH +
Sbjct: 369 NELQRMAMMDALTGLPNRAMFHHELAKALGSIGRTDDQIALLFLDLDEFKRVNDTLGHDI 428

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+++  ++++L     +   V RLGG+EF     G  E E  I    + +I  + Q  +
Sbjct: 429 GDELLKTVANRLQKSIRSMDTVCRLGGDEFTIIVRG-LESEGDI-HRIIHQIFTSLQQPL 486

Query: 211 SSGP-SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             G  ++ IT S G+   +     P   ++ RAD A+Y AK++GR+    F++
Sbjct: 487 QLGRHTLIITTSIGVVFCDNPMMRP-EELLKRADLAMYQAKQAGRSNYRVFNE 538


>gi|330957687|gb|EGH57947.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 682

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 115/235 (48%), Gaps = 40/235 (17%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGS------------------ILKELFIS 96
           LTP  G      + L L I +IT+ ++ G IS +                  +L +L  +
Sbjct: 139 LTPSTGNS----QQLGLTIAAITLLIIAGSISAAMADKKLQSKEHDLQRVNALLSQLDQA 194

Query: 97  YNRISQLSRIDCLSGLLNHSAFIS---------SLGSYNEKLSIVFFDIDYFKQINDNFG 147
              + Q++  D L+ L+N   F           +LG     L+++F DID+FK+IND+ G
Sbjct: 195 RVSLQQVAHYDPLTNLINRRGFNQIFAEKLLEHTLG--KGMLAVMFLDIDHFKRINDSLG 252

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+++  +++++         V R GG+EF         +EA  LA+   ++++  +
Sbjct: 253 HDAGDELLKVIAERIRSATRVQDVVSRFGGDEFCILLSIPDYEEARHLAH---RVMQKMK 309

Query: 208 INIS-SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFS 259
             I+ +G  + +T S GIA    ++ I+   ++  AD ALY +K +GRNRV  FS
Sbjct: 310 ETIALAGRRMVMTTSIGIAV-FPRDGITCDELLKHADLALYQSKGAGRNRVNFFS 363


>gi|320333481|ref|YP_004170192.1| diguanylate cyclase with PAS/PAC and GAF sensors [Deinococcus
            maricopensis DSM 21211]
 gi|319754770|gb|ADV66527.1| diguanylate cyclase with PAS/PAC and GAF sensors [Deinococcus
            maricopensis DSM 21211]
          Length = 1197

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 8/165 (4%)

Query: 100  ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
            + Q S  D L+GL N      +          +   + ++  DID+FK+ ND +GH  GD
Sbjct: 1030 LRQQSIRDALTGLFNRRYLEETFEREMRRAHRHRHPMGLIMLDIDHFKRFNDTYGHEAGD 1089

Query: 153  KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             ++  L + L           R GGEEFA    G++ ++ A  A  +R+ +    + +  
Sbjct: 1090 LLLRALGETLSANVRGEDVACRFGGEEFALLLPGATIEQTAARAEHIRQAVMQLHVTVRG 1149

Query: 213  GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                 +T S G+A    + E ++ +++ AD ALY AK  GRN VV
Sbjct: 1150 QALGQVTASFGVAVFPQYGEALADLMHAADFALYRAKSEGRNCVV 1194


>gi|317121578|ref|YP_004101581.1| diguanylate cyclase with GAF sensor [Thermaerobacter marianensis
           DSM 12885]
 gi|315591558|gb|ADU50854.1| diguanylate cyclase with GAF sensor [Thermaerobacter marianensis
           DSM 12885]
          Length = 562

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 16/185 (8%)

Query: 88  SILKELFISYNRISQLSRI------DCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           +I  E+ ++  R   L R+      D L+GL N +  +  L         Y   LS++F 
Sbjct: 364 AIADEVAVALERARLLERVEQQAITDPLTGLYNRTYLVERLREEGERAARYGRPLSLLFI 423

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D  K IND  GH  GD+V+  ++  L     +  F  R GG+EF      +  + A  
Sbjct: 424 DLDDLKVINDRLGHDAGDRVLVRVARVLREACRSVDFAARYGGDEFVVVLPETGPEGAMA 483

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +A  +++ +      +++G    I ++A  A   H    + ++  ADQA+Y AK+ G+ R
Sbjct: 484 VAARIQQRLAEQTSPLAAGLGASIGLAAYPA---HARDWTELLRLADQAMYGAKRRGKGR 540

Query: 255 VVCFS 259
           V  F 
Sbjct: 541 VGWFG 545


>gi|254687210|ref|ZP_05151068.1| sensory box/GGDEF family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724703|ref|ZP_05186486.1| sensory box/GGDEF family protein [Bacillus anthracis str. A1055]
 gi|254755818|ref|ZP_05207850.1| sensory box/GGDEF family protein [Bacillus anthracis str. Vollum]
 gi|254762158|ref|ZP_05214004.1| sensory box/GGDEF family protein [Bacillus anthracis str. Australia
           94]
          Length = 604

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 27/184 (14%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144
           L+    ++  L+  D L+GL N   F   L         S N+ ++++F D+D FK+IND
Sbjct: 165 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 223

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
             GH +GD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +    
Sbjct: 224 RLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQI---- 279

Query: 204 ENSQINISSGP------SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               +NI + P       + IT S GIA    C  + ++ ++  AD A+Y AK +G+NR 
Sbjct: 280 ----LNILNKPFFIKDEELSITPSIGIAMYPDCGTD-VTELMKNADMAMYRAKANGKNRF 334

Query: 256 VCFS 259
           V FS
Sbjct: 335 VFFS 338


>gi|171317768|ref|ZP_02906949.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria MEX-5]
 gi|171097052|gb|EDT41907.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria MEX-5]
          Length = 667

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 17/173 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQINDNFGHPV 150
           R+S+L+  D L+GL N  A    +G+           ++ I+F D+D FK++ND++GH  
Sbjct: 231 RLSELANTDMLTGLPNRHAISERIGAALAVDRTDMRGQVGILFLDLDNFKRVNDHYGHIT 290

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSS---EQEAAILANDLRKIIENS 206
           GD+++  +S  +     +   + RLGG+EF      G+    E  A I+   LR  I   
Sbjct: 291 GDRLLQDVSTIISGCLPSGATLARLGGDEFLVLFEHGTRPLLEATAQIILERLRTPIHLG 350

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + + +  SI I +        H + + T+I  AD A+YVAK+ G++    FS
Sbjct: 351 LMEVYTSCSIGIAMYP-----QHGDSLETLIRSADTAMYVAKEEGKHTYRVFS 398


>gi|161524101|ref|YP_001579113.1| diguanylate cyclase/phosphodiesterase [Burkholderia multivorans
           ATCC 17616]
 gi|189351142|ref|YP_001946770.1| signal transduction GGDEF/EAL domain protein [Burkholderia
           multivorans ATCC 17616]
 gi|221199545|ref|ZP_03572589.1| diguanylate cyclase/phosphodiesterase [Burkholderia multivorans
           CGD2M]
 gi|221205555|ref|ZP_03578570.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Burkholderia multivorans CGD2]
 gi|160341530|gb|ABX14616.1| diguanylate cyclase/phosphodiesterase [Burkholderia multivorans
           ATCC 17616]
 gi|189335164|dbj|BAG44234.1| signal transduction GGDEF/EAL domain protein [Burkholderia
           multivorans ATCC 17616]
 gi|221174393|gb|EEE06825.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Burkholderia multivorans CGD2]
 gi|221180830|gb|EEE13233.1| diguanylate cyclase/phosphodiesterase [Burkholderia multivorans
           CGD2M]
          Length = 778

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 16/204 (7%)

Query: 62  EYILVENLSLVIIS-ITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +Y    N+ L++ S IT+++L   G  +G I K L      ++QL+  D L+GL N  A 
Sbjct: 290 DYYHTRNVYLLMTSFITLAMLAFFGVATGLIGK-LLGREREMTQLAEYDLLTGLANRYAT 348

Query: 119 IS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           +       S+ S   +L ++F D+D FK +ND  GH  GD V+   + +L    G    +
Sbjct: 349 LRGLRNDVSMPSSLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTASRLSDAVGDEGTL 408

Query: 173 GRLGGEEFAAAALGSS-EQEAAILAND-LRKIIENSQINISSGPSIHITISAGIA-ERCH 229
            R+GG+EF     G   E+ A  LA   +R   E   +    G S  +  S GIA     
Sbjct: 409 ARIGGDEFVVVMKGDDVERRAVRLAEAIIRMFAEPFDVR---GSSFVLHASIGIALHTVA 465

Query: 230 KEPISTIIYRADQALYVAKKSGRN 253
            E    ++ +AD A+Y AK +G+N
Sbjct: 466 NESEIDLLKKADLAMYSAKDAGKN 489


>gi|313681961|ref|YP_004059699.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154821|gb|ADR33499.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
          Length = 571

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 88/169 (52%), Gaps = 11/169 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  L++ D L+ L N + F       I+   S ++   +++ D+D FK +ND+ GH VGD
Sbjct: 141 IRHLAKFDPLTNLPNRNFFRDELESRINQANSSSQYFGLLYIDLDRFKMVNDSLGHTVGD 200

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINIS 211
           +++  L+++   +     F+ RLGG+EFA   AL  S++   + A ++ + I+     + 
Sbjct: 201 RLLQKLAERFTSINEQNHFIVRLGGDEFAVITALVDSKKTVEMFAKNVHEAIKTPF--VI 258

Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I++T S GIA      E    +I  AD A+Y AK +G+N  + F 
Sbjct: 259 DNNDIYMTASIGIALYPQDGENSELLIKAADMAMYGAKINGKNTYLFFE 307


>gi|297569012|ref|YP_003690356.1| diguanylate cyclase with GAF sensor [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924927|gb|ADH85737.1| diguanylate cyclase with GAF sensor [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 493

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 77/161 (47%), Gaps = 13/161 (8%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N   F+        K       LS++F DID+FK +NDNFGH  GD+V+  L+
Sbjct: 201 DGLTGIYNRRFFLECAERELHKCQRGSNSLSLLFIDIDHFKDVNDNFGHVFGDQVLRQLA 260

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHI 218
             L           R GGEEF      ++ + A  LA  LR K+ E+            I
Sbjct: 261 KILQCGIRQSDIPARYGGEEFVVLLPDTNGEAACCLAEKLRSKVAEDLVATPPHEQPKTI 320

Query: 219 TISAGIAERCHKEPISTII---YRADQALYVAKKSGRNRVV 256
            ++ G+A   + E   T+I     AD+ LY  K+ GRNRVV
Sbjct: 321 NLTVGVAS--YPEDGKTVIDLLRVADRRLYKGKEEGRNRVV 359


>gi|254820324|ref|ZP_05225325.1| GGDEF domain-containing protein [Mycobacterium intracellulare ATCC
           13950]
          Length = 621

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 82/176 (46%), Gaps = 9/176 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQIND 144
           L+   ++  +I  L+  D L+GLLN  A I+ L     K     +S+VF  ID FK IN 
Sbjct: 163 LQARVVAEQQIHYLAEHDELTGLLNRRALIAHLDDRLAKGQPGPVSVVFLAIDRFKVINS 222

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKII 203
             G   GD+ I   +  L      P  + R GG+EF      + + EAA   A+ L   +
Sbjct: 223 RLGQDAGDRFIESFAALLREATRVPSVIARFGGDEFGVVPSAAMDVEAAEAFAHSLHGRV 282

Query: 204 ENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + QI I  G  +  T+S G+A      E  S ++ R DQA   AK SG N V  F
Sbjct: 283 -HQQIPI-DGEMLSRTVSIGVAAGLPGDETTSDLLRRVDQATRSAKASGGNNVATF 336


>gi|256829806|ref|YP_003158534.1| response regulator receiver modulated diguanylate cyclase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578982|gb|ACU90118.1| response regulator receiver modulated diguanylate cyclase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 310

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 19/185 (10%)

Query: 85  ISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFIS-SLGSYNE------KLSIVFFD 135
           I   I   L +  NR  +  LS +D L+ + N   F    +  +N        LS++F D
Sbjct: 117 IRARIRNHLELKRNRDLLENLSTLDGLTNIPNRRRFDEIYIQEWNRALRTKSSLSLLFID 176

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAI 194
           ID+FK  ND +GH  GD  +  ++  L    G P  F+ R GGEEF      + EQ    
Sbjct: 177 IDHFKNYNDLYGHMAGDDCLKAVARVLQSSLGRPADFLARFGGEEFIILLPDTKEQGCLH 236

Query: 195 LANDLRKIIENSQI-NISSGPSIHITISAGI-----AERCHKEPISTIIYRADQALYVAK 248
           LA ++R+ ++   I ++ S  + ++T+S G        +C +   S ++ +AD+ LY AK
Sbjct: 237 LAENIRRALKELHIEHLDSSVADYLTVSIGAVTCNDVTQCDR---SFLLEQADKLLYQAK 293

Query: 249 KSGRN 253
             GRN
Sbjct: 294 HEGRN 298


>gi|171316975|ref|ZP_02906182.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
 gi|171097899|gb|EDT42719.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
          Length = 492

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 78/171 (45%), Gaps = 12/171 (7%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+R D L+GL N  +F   L     +        S++F D+D FK  ND +GH  GD  +
Sbjct: 323 LARTDGLTGLNNRRSFGEVLDREWRRARRTHSVFSLLFVDVDRFKAYNDTYGHQAGDDAL 382

Query: 156 AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           A ++  +      P+    R GGEEF      +    AA +A  +R  I+   +  +   
Sbjct: 383 AAVARCIGENIRRPVDTAARYGGEEFVVLLPDTPPAGAAQIAERIRAAIDELALEHAGSE 442

Query: 215 SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              +T S G+A        EP   +I  AD+ALY AK  GRNRV     ++
Sbjct: 443 YGRVTASIGLASWTPEQDNEP-GAVIKAADEALYYAKTIGRNRVAALQPLD 492


>gi|171058751|ref|YP_001791100.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Leptothrix cholodnii SP-6]
 gi|170776196|gb|ACB34335.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptothrix cholodnii SP-6]
          Length = 729

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 18/196 (9%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRI----------DCLSGLLNHSAFISS 121
           V + +TI+ L G  SG       +S N IS+  R+          D ++GL N SA  + 
Sbjct: 262 VPVDVTITTLPGDHSGGTY---LVSLNDISEQRRVEARLEHLALSDAVTGLPNRSALENQ 318

Query: 122 LG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           L       +  ++++ D++  K++ND+FGH  GD ++  L+D+L  +     F+ R GG+
Sbjct: 319 LLRQLDREQAFALMYLDVEGVKEVNDSFGHDAGDDLLRQLADRLRTILPAGTFISRWGGD 378

Query: 179 EFA-AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EF    A GS E E    A  +   +        +  S+  +I A +  R  +E    ++
Sbjct: 379 EFVLVLAPGSGETEVRSCAQTMIAALSPPMKVFLNEISVAPSIGAVLVPRDGRE-SGLLL 437

Query: 238 YRADQALYVAKKSGRN 253
            +AD A+  AK  GR+
Sbjct: 438 RKADSAMQAAKLRGRD 453


>gi|188991602|ref|YP_001903612.1| Putative sensor protein [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167733362|emb|CAP51563.1| Putative sensor protein [Xanthomonas campestris pv. campestris]
          Length = 975

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 78/156 (50%), Gaps = 8/156 (5%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN S  + ++        S    L++V  D+D+FK +ND  GH VGD V+A + 
Sbjct: 811 DALTGLLNRSGVLEAMAEELQQCASTGHPLAVVLIDLDHFKLVNDEHGHLVGDAVLAQVG 870

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +L         VGR GGEE      G ++Q    L   + + I  +   +     + +T
Sbjct: 871 ARLTNCLRDSDKVGRYGGEELLLLLPGMTQQSQHRL-RAIHEAIGATPYEVGIARPLRVT 929

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+A     +   T++ RAD+ALY AK  GRNR+
Sbjct: 930 CSVGVAWFRSGDSTPTLLARADEALYRAKGQGRNRI 965


>gi|332994026|gb|AEF04081.1| signal transduction protein [Alteromonas sp. SN2]
          Length = 1045

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 26/180 (14%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  ++  D L+ L N S         +S   S    +++   D+D FK+INDNFGH VG
Sbjct: 597 KLEHMAHYDVLTNLPNRSLLAERLDRALSQCKSDKGFVAVALLDLDGFKEINDNFGHSVG 656

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIE----- 204
           D+++  L+ +L         + R GG+EF    A L   +   AI+ N LR   E     
Sbjct: 657 DELLVILAHRLKGTLRETDTISRFGGDEFVTVLANLKQPQDFVAIIKNMLRVASEPVKIG 716

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS--DIE 262
            SQ+ +S+  SI +T+         +     +I  ADQA+Y+AK+ G+N   C+   DIE
Sbjct: 717 ESQLKVSA--SIGVTLYPADNTDADQ-----LIRHADQAMYLAKQKGKN---CYHLFDIE 766


>gi|220929304|ref|YP_002506213.1| diguanylate cyclase with GAF sensor [Clostridium cellulolyticum
           H10]
 gi|219999632|gb|ACL76233.1| diguanylate cyclase with GAF sensor [Clostridium cellulolyticum
           H10]
          Length = 558

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 13/167 (7%)

Query: 97  YNRISQLSRIDCLSGLLN----HSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHP 149
           Y  + +++ +D L+G+ N    H  F +      EK   LS+V  DID+FK  ND +GH 
Sbjct: 386 YANLQEMATVDGLTGVYNRVYFHEKFENEFRMAKEKGYNLSLVILDIDFFKIFNDTYGHL 445

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  +         + R GGEEF      +S Q+A      LR  I  + I 
Sbjct: 446 FGDVVLKEVAQTVKNNLRGTDTIARFGGEEFVLILPRTSIQQAHEKVEFLRTRIAGNIIK 505

Query: 210 ISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRN 253
             +  S  +T S GIA  C+ E  S    +I  AD ALY AK+SGRN
Sbjct: 506 -DNLISASVTASFGIA--CYPETSSNQVGLIRDADNALYKAKESGRN 549


>gi|91201200|emb|CAJ74260.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 1069

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 17/163 (10%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N   F   L         Y    +++F D+D FK +ND  GH  GD+++  L+
Sbjct: 657 DPLTNLFNRRRFQEELQYWIAQTLRYGATGALLFLDLDNFKYVNDTLGHQAGDELLIRLA 716

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L           R GG+EFA     +  ++A ++AN++ ++        S      +T
Sbjct: 717 EMLRSRLRDTDIFARFGGDEFAILLPYTDREKAGLIANEILELTREHTFEHSK-----VT 771

Query: 220 ISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            S GI    E  H     T++  AD A+Y AK+SGRNR   FS
Sbjct: 772 FSIGIVIFPE--HGRDAETLLVNADLAMYRAKESGRNRFCVFS 812


>gi|89901321|ref|YP_523792.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
 gi|89346058|gb|ABD70261.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
          Length = 398

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 9/164 (5%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      +L          N  L+ V  DID+FK +ND++GH  GD+V+  ++
Sbjct: 233 DPLTGLYNRRYLSDALAREIIQAKRANSSLTFVMADIDHFKFVNDSYGHLAGDEVLVQVA 292

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L           R GGEEF     G+S + A   A ++++      I    G +I + 
Sbjct: 293 SLLKKHARGSDIACRYGGEEFLLVFPGTSLELAHKRAEEIQQNCAALSIQ-HEGKNIAVM 351

Query: 220 ISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +S G+A    H +    II +AD+ALY +K +GRN+V  F D E
Sbjct: 352 LSFGVAAYPDHGQQWEQIIVKADKALYQSKCNGRNQVTIFRDEE 395


>gi|108763499|ref|YP_631206.1| HAMP domain/GAF domain/GGDEF domain-containing protein [Myxococcus
           xanthus DK 1622]
 gi|27804877|gb|AAO22911.1| hypothetical protein [Myxococcus xanthus]
 gi|108467379|gb|ABF92564.1| HAMP domain/GAF domain/GGDEF domain protein [Myxococcus xanthus DK
           1622]
          Length = 645

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 9/167 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+G+ N       +         +   L+++  D+D+FK+IND  GH VGD+ 
Sbjct: 443 KLTMTDPLTGVPNRRHLFQRMELELARSNRFGTPLALLMVDVDHFKRINDLAGHRVGDET 502

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG- 213
           +  + D L +       + R GGEEF      +++ EA  +A  LR+ +  S   +  G 
Sbjct: 503 LRRVCDVLRLRVRKVDTLARYGGEEFVILLPQTNKAEAMEVAEKLRRAVAESVELVQPGL 562

Query: 214 PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           P  H+T+S G +           ++  AD ALY +K++GRNR   + 
Sbjct: 563 PGNHVTVSIGASHFPSDASAQEELVDCADAALYFSKRTGRNRTTQYE 609


>gi|328952931|ref|YP_004370265.1| diguanylate cyclase [Desulfobacca acetoxidans DSM 11109]
 gi|328453255|gb|AEB09084.1| diguanylate cyclase [Desulfobacca acetoxidans DSM 11109]
          Length = 254

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 16/200 (8%)

Query: 72  VIISITISLL----LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           +++S+ + LL    L Y    + +++  +  ++ +++ +D L+ L N   F    G    
Sbjct: 48  ILVSLAVILLVLGGLYYFIARLTRKVAAAQEKLVKMASVDDLTRLHNRRFFFEQFGQEVE 107

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               Y   LS +  DID+FK IND +GH +GD+++  ++  L           R GG+E 
Sbjct: 108 RAKRYRRSLSCIMLDIDHFKAINDTYGHLLGDQLLIDIAQILHDNCRLSDLAARYGGDEL 167

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-----ERCHKEPIST 235
                 +    A  +A  +RK++   QI    G  I  T+S G+A     +    +    
Sbjct: 168 IVLLPETEAAGAIAIAERIRKLVAQHQIVGEKGEVIRATVSIGVASLGAGQLQDIDHYDR 227

Query: 236 IIYRADQALYVAKKSGRNRV 255
           II  AD ALY AK  GRNR 
Sbjct: 228 IIRYADDALYRAKTGGRNRT 247


>gi|325914024|ref|ZP_08176380.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325539793|gb|EGD11433.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 571

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 96/197 (48%), Gaps = 14/197 (7%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
            E LSLV+ S+ +   L     SI   L   YNR         L   LNH   ++     
Sbjct: 377 AEQLSLVLHSLRLRETL--RQQSIRDPLTGLYNR-------RYLEEALNHE--LARCTRR 425

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            + LS++  D+D+FK+ ND  GH  GD+V+A + + L+          R GGEE      
Sbjct: 426 VQPLSVLMLDVDHFKRFNDLHGHSGGDRVLAAIGELLLTQTRGEDICCRYGGEELTIILP 485

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAE-RCHKEPISTIIYRADQA 243
                 A  +A  LR  IE+ Q+ ++ G S+  IT S G A    H    + ++ RAD+A
Sbjct: 486 EVDLTTARKMAEKLRAGIESLQV-MADGVSLPKITASFGAASFPEHAGNAAQLLRRADEA 544

Query: 244 LYVAKKSGRNRVVCFSD 260
           LY AK++GRN+V+  ++
Sbjct: 545 LYRAKQAGRNQVISAAE 561


>gi|221211619|ref|ZP_03584598.1| diguanylate cyclase/phosphodiesterase [Burkholderia multivorans
           CGD1]
 gi|221168980|gb|EEE01448.1| diguanylate cyclase/phosphodiesterase [Burkholderia multivorans
           CGD1]
          Length = 778

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 16/204 (7%)

Query: 62  EYILVENLSLVIIS-ITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +Y    N+ L++ S IT+++L   G  +G I K L      ++QL+  D L+GL N  A 
Sbjct: 290 DYYHTRNVYLLMTSFITLAMLAFFGVATGLIGK-LLGREREMTQLAEYDLLTGLANRYAT 348

Query: 119 IS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           +       S+ S   +L ++F D+D FK +ND  GH  GD V+   + +L    G    +
Sbjct: 349 LRGLRNDVSMPSSLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTASRLSDAVGDEGTL 408

Query: 173 GRLGGEEFAAAALGSS-EQEAAILAND-LRKIIENSQINISSGPSIHITISAGIA-ERCH 229
            R+GG+EF     G   E+ A  LA   +R   E   +    G S  +  S GIA     
Sbjct: 409 ARIGGDEFVVVMKGDDVERRAVRLAEAIIRMFAEPFDVR---GSSFVLHASIGIALHTVA 465

Query: 230 KEPISTIIYRADQALYVAKKSGRN 253
            E    ++ +AD A+Y AK +G+N
Sbjct: 466 NESEIDLLKKADLAMYSAKDAGKN 489


>gi|86749480|ref|YP_485976.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
 gi|86572508|gb|ABD07065.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
          Length = 313

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 20/175 (11%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q +  D L+GL N + F       +    ++    ++V  D+D FK +ND  GH  GD
Sbjct: 138 LRQQAETDPLTGLANRTIFQVRYREVVDDSLNHGFASALVLIDLDGFKDLNDTHGHLAGD 197

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDL----RKIIENS 206
             +  ++ +L   F     VGRLGG+EFA    A  +  + A +L   L    R +  N 
Sbjct: 198 ACLCEVAQRLRRAFHNAGLVGRLGGDEFAIILRAPTAPARIAEVLQQTLVMLSRPMFWNG 257

Query: 207 -QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +I +S+      +I A +  R H+  I+ +   AD ALY AK +GRNRV    D
Sbjct: 258 LRIEVSA------SIGAALVGRPHRRRIADLFAEADVALYRAKAAGRNRVHLVGD 306


>gi|24375887|ref|NP_719930.1| GGDEF family protein [Shewanella oneidensis MR-1]
 gi|24350860|gb|AAN57374.1|AE015874_1 GGDEF family protein [Shewanella oneidensis MR-1]
          Length = 344

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 87/175 (49%), Gaps = 16/175 (9%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL  + NR+ +LS  D L+ + N   F   L          N  LS++  DID+FK  ND
Sbjct: 161 ELAEANNRLEKLSNTDGLTNIGNRRLFDQMLQKEWSRGQRNNTPLSLIMLDIDHFKLFND 220

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           ++GH  GD  +  L++ L          V R GGEEF      +  Q A   A  + ++I
Sbjct: 221 HYGHLAGDDCLKMLANGLSQSGRRAGELVARYGGEEFVILLPNTDLQTALDTAKHVHQLI 280

Query: 204 ENSQI-NISSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRN 253
           ++  I +I +   I +T+S G+A  C     K     ++++AD ALY+AK +GRN
Sbjct: 281 QSLAIPHIKTNLGI-VTVSVGVA--CLLPSDKHNALELVHQADTALYLAKSAGRN 332


>gi|21231360|ref|NP_637277.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66768587|ref|YP_243349.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21113022|gb|AAM41201.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66573919|gb|AAY49329.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 987

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 78/156 (50%), Gaps = 8/156 (5%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN S  + ++        S    L++V  D+D+FK +ND  GH VGD V+A + 
Sbjct: 823 DALTGLLNRSGVLEAMAEELQQCASAGHPLAVVLIDLDHFKLVNDEHGHLVGDAVLAQVG 882

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +L         VGR GGEE      G ++Q    L   + + I  +   +     + +T
Sbjct: 883 ARLTNCLRDSDKVGRYGGEELLLLLPGMTQQSQHRL-RAIHEAIGATPYEVGIARPLRVT 941

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+A     +   T++ RAD+ALY AK  GRNR+
Sbjct: 942 CSVGVAWFRSGDSTPTLLARADEALYRAKGQGRNRI 977


>gi|329912810|ref|ZP_08275818.1| putative transmembrane protein [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545522|gb|EGF30714.1| putative transmembrane protein [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 657

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 17/168 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
           N++  L+R D L+GL N + F   L     +       ++++F DID+FK IND  GH  
Sbjct: 489 NQLRVLARHDTLTGLPNRNQFDEKLAEAMARSRRSGHAMALMFLDIDHFKSINDTLGHHS 548

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIE--NS 206
           GD+V+   + +L+        V RL G+EF      L   E+ + + A    KII   ++
Sbjct: 549 GDEVLCEFARRLLHSVRQTDTVSRLAGDEFVIILEGLQLPEESSKVAA----KIISAMST 604

Query: 207 QINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
             +I   P   I+ S GIA  + +    S ++ RAD+ALY AK +GRN
Sbjct: 605 DFDILGVPR-RISTSIGIAVGKINDNNGSALLRRADEALYAAKAAGRN 651


>gi|262173739|ref|ZP_06041416.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio mimicus MB-451]
 gi|261891097|gb|EEY37084.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio mimicus MB-451]
          Length = 412

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 23/170 (13%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+ +    A    L    +K ++   D+D+FK+ ND +GH  GD V+  ++ +L ++ 
Sbjct: 241 DPLTQIPGRQALDQDLKHIGKKFTLAMLDVDHFKKFNDTYGHDTGDDVLKLVASRLRLIE 300

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPS-------- 215
           G    V R GGEEF+         E       LR+ IE+ ++   N S  P         
Sbjct: 301 GKAR-VYRYGGEEFSIIYRNKLADEVLPFIEALRQDIESYELVIRNSSKRPKSDAEGAKK 359

Query: 216 ---------IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
                    + ITIS G+ + + H+ P +  +  AD ALY AK++GRN V
Sbjct: 360 RTRKSNSDIVTITISIGVCDSQLHRNP-NEALKAADAALYKAKQAGRNCV 408


>gi|255093357|ref|ZP_05322835.1| putative signaling protein [Clostridium difficile CIP 107932]
          Length = 427

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 10/131 (7%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+DYFK+ ND +GH  GD  +  ++  +       MF+ R GGEEF   ++    +++ I
Sbjct: 304 DVDYFKEYNDTYGHYNGDIALKNITIIIKKYLKKDMFMIRYGGEEFLILSVCKDYKKSKI 363

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGR 252
               L +I++    N       ++T+S GI + C    I    II  AD+ALY AK+SGR
Sbjct: 364 FGRKLCRIVKKFLNN-------NLTVSIGI-DTCKNSSIDIREIIENADKALYKAKESGR 415

Query: 253 NRVVCFSDIEN 263
           NR + + D +N
Sbjct: 416 NRCLHYHDFKN 426


>gi|152970994|ref|YP_001336103.1| hypothetical protein KPN_02455 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150955843|gb|ABR77873.1| hypothetical protein KPN_02455 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 595

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 23/182 (12%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   R+   +  D L+G+ N  +F       ++ +  Y     ++ FD+D FK +N
Sbjct: 172 EKLQVQNRRLQYDAYHDSLTGMPNRLSFWQRLQEIVNQVRPYKGCAVVMLFDLDSFKDVN 231

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GDK++  L+ +L     T   + RLGG+EFA  +   +E+ A   AN +R+ I
Sbjct: 232 DTLGHDAGDKLLQDLASRLSFFRKTSETLYRLGGDEFAMLSYDLTEEMALERANIIREKI 291

Query: 204 E------NSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
                  ++QINI +   I I IS G       E  +  +Y+ AD ALY AKK G   V 
Sbjct: 292 SQPYQIYDAQINIDA--CIGIVISDG-------ESRTDYLYKCADLALYEAKKEGSGHVQ 342

Query: 257 CF 258
            F
Sbjct: 343 IF 344


>gi|197116670|ref|YP_002137097.1| diguanylate cyclase [Geobacter bemidjiensis Bem]
 gi|197086030|gb|ACH37301.1| diguanylate cyclase [Geobacter bemidjiensis Bem]
          Length = 408

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 95/210 (45%), Gaps = 33/210 (15%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSR--------------IDCLSGLLNHSAF---- 118
           T SL LG ++G ++    ISY  + + +R               D L+G  N        
Sbjct: 202 TASLALGALAGILVVVFGISYFLVRKGTREIKEIQEVLKKQTMTDALTGTFNKGQIELLA 261

Query: 119 ---ISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
               +     NEK      L  +  DID FK++NDN+GH  GD ++   + ++       
Sbjct: 262 CKEFARCVRRNEKGLGDADLGFIMIDIDRFKEVNDNYGHLAGDVLLQQFAARIARSLRNY 321

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
             +GR GGEEF     GS  ++   +A  +  ++   +  +  G  I +T S G A    
Sbjct: 322 DSIGRFGGEEFLVMLPGSDLEQTRAVAQKIWSLL-REEPYLVDGREIDLTASLGAA--AV 378

Query: 230 KEPISTIIY---RADQALYVAKKSGRNRVV 256
           KE  + +++   RADQ LY AK +GR+RVV
Sbjct: 379 KEGDADLLHVLKRADQRLYAAKSAGRDRVV 408


>gi|197119693|ref|YP_002140120.1| PAS domain-containing sensor diguanylate cyclase [Geobacter
           bemidjiensis Bem]
 gi|197089053|gb|ACH40324.1| sensor diguanylate cyclase, PAS domain-containing protein
           [Geobacter bemidjiensis Bem]
          Length = 297

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 12/174 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           ++  +  ++ Q   +D L+G+ N      SL S       +     ++F D+D+FK +ND
Sbjct: 125 QILAALEQLKQDVLVDPLTGVGNRRLADMSLESRLHDWQTHRRPFGVLFMDVDHFKSVND 184

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+  L   +   F     V R GGEEF A          A +A  +R  + 
Sbjct: 185 RYGHKTGDEVLRMLGKTISNTFRKVDTVARWGGEEFVAILPAMRLPALASIAERIRSAVA 244

Query: 205 NSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S + +  G  + +T+S G  IAE    +   +II RAD  +Y +K  GRN V 
Sbjct: 245 GSFL-MEDGQRVGVTLSIGGTIAE--TGDNAESIISRADAQMYRSKAGGRNLVT 295


>gi|95930341|ref|ZP_01313078.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95133593|gb|EAT15255.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 319

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 84/173 (48%), Gaps = 14/173 (8%)

Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+ L N    + +L           E  S++  D+D+FK IND +GH  GD V+
Sbjct: 141 LSSTDSLTQLYNRRVLMRTLRKEFQRQVRTEESFSLLMVDVDHFKNINDRYGHLNGDTVL 200

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-P 214
             L+  L           R GGEEFA     ++ + A  +A  LR  +   ++  S    
Sbjct: 201 INLARMLRSYLRPYDVPTRFGGEEFALVLPNTNMECAREVAERLR--LAAKELRFSGEIR 258

Query: 215 SIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFSDIENN 264
            + ITIS G+A  C  + + +   ++   D ALY AK +GR++VVC +++  N
Sbjct: 259 DLEITISIGVAT-CPADGVESEDDLLKLTDDALYAAKSAGRDQVVCATELPTN 310


>gi|288942758|ref|YP_003444998.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Allochromatium vinosum DSM
           180]
 gi|288898130|gb|ADC63966.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Allochromatium vinosum DSM 180]
          Length = 1114

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 81/165 (49%), Gaps = 11/165 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N + F  +LG   E         ++   DID+FK IND  GH  GD ++  ++
Sbjct: 695 DALTELPNRARFREALGEVIENCRRTGQGFAVALMDIDHFKTINDTLGHDKGDVLLCAVA 754

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218
            ++      P  V RLGG+EFA      ++   A L  +  +I+E  +  I  G     I
Sbjct: 755 KRIRAELPEPGLVARLGGDEFALLLPDITDTAVASLWAE--RIVEALRRAIVVGEDRFSI 812

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF-SDIE 262
           T S G+A          ++ +AD ALY AK++GRNR   F SD+E
Sbjct: 813 TSSLGLAMGGPDSEPGELLKQADLALYHAKEAGRNRASHFDSDLE 857


>gi|315126495|ref|YP_004068498.1| GGDEF domain membrane protein [Pseudoalteromonas sp. SM9913]
 gi|315015009|gb|ADT68347.1| putative GGDEF domain membrane protein [Pseudoalteromonas sp.
           SM9913]
          Length = 225

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 104/219 (47%), Gaps = 24/219 (10%)

Query: 48  IFLFYIGLTPFYGLEYILVENLSLV-IISITISLLLGYISGSILKELFISYNRISQLSRI 106
           + LFY+       + + L+ NLSL  II   +S +   +  S  +E       I  L+  
Sbjct: 5   LLLFYVIDKRLVEINFKLIINLSLTYIIVWGVSHVFESMRASNQEE-------IINLALR 57

Query: 107 DCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+   N  AF S   +   ++        D+D+FK++ND +GH  GD V+  L+ QL 
Sbjct: 58  DSLTQAYNRRAFKSHFHNHIDFSNPYCFALADLDFFKKVNDKYGHDAGDAVLVQLT-QLF 116

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQINISSGPSIHITISA 222
                   V R GGEEF      + + E AI+  D LR  I+N Q       +++ITIS 
Sbjct: 117 KKHLGDEHVYRFGGEEFTLVV--NDDIEVAIITMDKLRTDIQNHQFTYMQ-STLNITISI 173

Query: 223 GIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G+      E  H   +S I+  AD  LY+AK +GRN VV
Sbjct: 174 GLVGIDAHEHTH---LSEILRLADNYLYLAKNNGRNCVV 209


>gi|254507527|ref|ZP_05119661.1| PAS fold family protein [Vibrio parahaemolyticus 16]
 gi|219549597|gb|EED26588.1| PAS fold family protein [Vibrio parahaemolyticus 16]
          Length = 692

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 83/170 (48%), Gaps = 17/170 (10%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+GL N   F   L      +  L +++ DID FK IND+ GH +GDKVI  +S 
Sbjct: 266 AHIDSLTGLYNRFGFTKRLEQLIQNDTPLIMLYLDIDNFKNINDSLGHHIGDKVIKEVSS 325

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------ 214
           +L  +      +G LGG+EF    L   E E   +A  L + I    I++ + P      
Sbjct: 326 RLKRLLPQQAVLGHLGGDEF---GLILPEPENNRMAEMLSERI----ISLINQPFDLHHF 378

Query: 215 SIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           S  +  S G +A          ++  AD A+Y AK  GRNR++ F+D  N
Sbjct: 379 SKRLACSIGSVAYPGDGNDARILLQNADTAMYEAKDRGRNRLIKFNDQMN 428


>gi|153010670|ref|YP_001371884.1| diguanylate cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC
           49188]
 gi|151562558|gb|ABS16055.1| diguanylate cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC
           49188]
          Length = 656

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 21/203 (10%)

Query: 68  NLSLVIISITISLL-LGYISGSIL-KELFISYNRIS----QL-------SRIDCLSGLLN 114
           +L   +I++ + L  LG   G++L +  FI  +R+     QL       S+ D L+GL N
Sbjct: 179 DLQYGVIAVAVVLFWLGLTRGALLGQNRFIQTSRLKHEAKQLADEMALKSQEDPLTGLFN 238

Query: 115 HSAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                +S+  Y  K     ++  D+D FK +ND +GH VGD ++  ++ ++  V      
Sbjct: 239 RRGLETSIRLYPVKDGPFIVMLIDLDGFKSVNDTYGHKVGDDLLVAIAQRIRQVSPERSV 298

Query: 172 VGRLGGEEFAAA-ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
           + R+GG+EF  A    S++ EA ++A    +II +   +     S+ I    GI      
Sbjct: 299 LARIGGDEFVLAYPEPSAKIEAGLVAA---RIIGSLTAHYEGILSVEIGACVGICRLERL 355

Query: 231 EPISTIIYRADQALYVAKKSGRN 253
           +P+  ++ RAD ALY AKK GRN
Sbjct: 356 DPVEMLL-RADFALYAAKKRGRN 377


>gi|126643303|ref|YP_001086287.1| putative GGDEF family protein [Acinetobacter baumannii ATCC 17978]
 gi|126389187|gb|ABO13685.1| putative GGDEF family protein [Acinetobacter baumannii ATCC 17978]
          Length = 568

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 9/164 (5%)

Query: 99  RISQLSRIDCLSGLLNH---SAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152
           ++  ++  D L+G+ N    S ++  + SY +K S   ++  DID FK +ND +GH VGD
Sbjct: 405 QLKNIANTDPLTGVSNRLALSEYLKIVESYPQKFSQTCLMIIDIDRFKHVNDQYGHIVGD 464

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
           +VI  ++DQL         + R GG+EF          +A +LA  +R  I   +I++S 
Sbjct: 465 QVIRRIADQLKANVRASDLIVRYGGDEFLILLEQVQFLDARLLAEKIRIAISLEEIDLSG 524

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   +H+++S G A          ++  AD++L  AK  GRN V
Sbjct: 525 TQEKLHVSVSIGFA--IGATSWMELLENADRSLLRAKARGRNVV 566


>gi|54297266|ref|YP_123635.1| hypothetical protein lpp1311 [Legionella pneumophila str. Paris]
 gi|53751051|emb|CAH12462.1| hypothetical protein lpp1311 [Legionella pneumophila str. Paris]
          Length = 792

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 12/164 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R++  +  D L+GL N +A    L          N  LS++F DID FK IND+ GH  G
Sbjct: 352 RLAYQANHDSLTGLPNRTALYDRLDHAINYCKRLNTSLSVLFLDIDNFKLINDSLGHDAG 411

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++   S +L         V R GG+EF    + +  ++  ++A ++ K +    I + 
Sbjct: 412 DILLYEFSRRLKGCIRHSDTVARFGGDEFVLLLMTTEPKDVILVAQNILKAVAQP-IKLP 470

Query: 212 SGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRN 253
           +   I +T S GI+    K+ I  ST++  +D A+Y+AKK GRN
Sbjct: 471 TQEVI-VTTSIGIS-LFPKDGIDASTLLKNSDTAMYLAKKEGRN 512


>gi|54295250|ref|YP_127665.1| hypothetical protein lpl2333 [Legionella pneumophila str. Lens]
 gi|53755082|emb|CAH16573.1| hypothetical protein lpl2333 [Legionella pneumophila str. Lens]
          Length = 565

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 87/205 (42%), Gaps = 14/205 (6%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN----HSA 117
           E I  EN   ++ S+    +   IS  +L+E       +   S  D L+GL N    + A
Sbjct: 364 EEINKENNQEILASMMAEQIALGISNIMLRET------LRNQSLRDVLTGLYNRRYLNEA 417

Query: 118 FISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
               L     K   L+++  DID+FKQ ND FGH  GD VI   ++ L  V        R
Sbjct: 418 LDRELNRCARKSLSLAVLMLDIDHFKQFNDKFGHEAGDMVIQAFANVLRQVTRKEDIACR 477

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPI 233
            GGEEF         + A   A  +   +    +         ITIS G+     H   +
Sbjct: 478 YGGEEFILIIPEIDLEAALQRAQSIHDAVSRIHLRYGGNALTQITISIGLTMYPAHGNDM 537

Query: 234 STIIYRADQALYVAKKSGRNRVVCF 258
             +I  AD ALY AK SGRN+ V +
Sbjct: 538 QDLITAADNALYEAKNSGRNKTVLY 562


>gi|329298612|ref|ZP_08255948.1| putative diguanylate cyclase YedQ [Plautia stali symbiont]
          Length = 145

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 74/137 (54%), Gaps = 12/137 (8%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            + L+++  DID+FK++ND++GH  GD+ +  ++  +          GR+GGEEF     
Sbjct: 10  QQPLAVIQLDIDHFKKVNDSWGHHAGDQALMRVAGVIKHTLRPYDVAGRIGGEEFCIVLP 69

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-------HKEPISTIIY 238
            ++  +A  +A  +R  +    I +++  +  +T+SAG++  C       H E +  +  
Sbjct: 70  HTTRADAQGVAERIRSRLAAKTILVNASTTFSVTLSAGVS--CSTEQGSYHAESLQAV-- 125

Query: 239 RADQALYVAKKSGRNRV 255
            AD+ LY+AK  GRNRV
Sbjct: 126 -ADRRLYLAKSGGRNRV 141


>gi|330000638|ref|ZP_08303776.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
 gi|328537927|gb|EGF64111.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
          Length = 595

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 23/182 (12%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   R+   +  D L+G+ N  +F       ++ +  Y     ++ FD+D FK +N
Sbjct: 172 EKLQVQNRRLQYDAYHDSLTGMPNRLSFWQRLQEIVNQVRPYKGCAVVMLFDLDSFKDVN 231

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GDK++  L+ +L     T   + RLGG+EFA  +   +E+ A   AN +R+ I
Sbjct: 232 DTLGHDAGDKLLQDLASRLSFFRKTSETLYRLGGDEFAMLSYDLTEEMALERANVIREKI 291

Query: 204 E------NSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
                  ++QINI +   I I IS G       E  +  +Y+ AD ALY AKK G   V 
Sbjct: 292 SQPYQIYDAQINIDA--CIGIVISDG-------ESRTDYLYKCADLALYEAKKEGSGHVQ 342

Query: 257 CF 258
            F
Sbjct: 343 IF 344


>gi|307611265|emb|CBX00924.1| hypothetical protein LPW_26251 [Legionella pneumophila 130b]
          Length = 552

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 87/205 (42%), Gaps = 14/205 (6%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN----HSA 117
           E I  EN   ++ S+    +   IS  +L+E       +   S  D L+GL N    + A
Sbjct: 351 EEINKENNQEILASMMAEQIALGISNIMLRET------LRNQSLRDVLTGLYNRRYLNEA 404

Query: 118 FISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
               L     K   L+++  DID+FKQ ND FGH  GD VI   ++ L  V        R
Sbjct: 405 LDRELNRCARKSLSLAVLMLDIDHFKQFNDKFGHEAGDMVIQAFANVLRQVTRKEDIACR 464

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPI 233
            GGEEF         + A   A  +   +    +         ITIS G+     H   +
Sbjct: 465 YGGEEFILIIPEIDLEAALQRAQSIHDAVSRIHLRYGGNALTQITISIGLTMYPAHGNDM 524

Query: 234 STIIYRADQALYVAKKSGRNRVVCF 258
             +I  AD ALY AK SGRN+ V +
Sbjct: 525 QDLITAADNALYEAKNSGRNKTVLY 549


>gi|289208212|ref|YP_003460278.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
 gi|288943843|gb|ADC71542.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
          Length = 842

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 82/175 (46%), Gaps = 18/175 (10%)

Query: 99  RISQLSRIDCLSGLLN----HSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI   +  D L+GL N    H     S+     +  +++++  D+D+FK IND FGH  G
Sbjct: 409 RIQHQATHDSLTGLPNRWLLHDRLAQSIAHASRHEHRIAVMLLDLDHFKMINDTFGHHEG 468

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFA------AAALGSSEQEAAILANDLRKIIEN 205
           D+++  ++ +L    GT   +GR GG+EF          L   E+   ILA   R     
Sbjct: 469 DELLREVAQRLKDAAGTDATIGRFGGDEFMILLPEITDELQVGERGQEILAQFDRPFHTG 528

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                SS  S+ I +    A        +T++  AD A+Y AK+SGRN    +S+
Sbjct: 529 PTRQFSSSASLGIALFPQDARDA-----NTLVRYADMAMYEAKRSGRNTYAFYSE 578


>gi|254457790|ref|ZP_05071218.1| two-component response regulator [Campylobacterales bacterium GD 1]
 gi|207086582|gb|EDZ63866.1| two-component response regulator [Campylobacterales bacterium GD 1]
          Length = 427

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 9/167 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           + +   L+  D L+G  N   F  S  +        ++++++   DID FK +ND +GH 
Sbjct: 259 FKQTKDLANKDFLTGSYNRRYFFESSKAILNKNQRKDKEVAVATLDIDLFKNVNDTYGHD 318

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD  I  ++  L     T   V R GGEE+       S ++   L   +R   EN++I 
Sbjct: 319 VGDVAIQEIAIILDKTLRTSDLVARFGGEEYCILLEDISLEDTKHLFEKIRSNFENNEIK 378

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +    S+  T+S GIA       I+ ++  +D+ALY AK +GRN+V+
Sbjct: 379 VDD-ISLKYTVSLGIA-YGKSIDINALLKVSDEALYEAKDTGRNKVI 423


>gi|207724828|ref|YP_002255225.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
 gi|206590053|emb|CAQ37014.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
          Length = 914

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 11/165 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D L+GL N S FI+ L S  E+       L++ F D+D FK +ND  GH  G
Sbjct: 472 RLRHLASHDALTGLTNRSFFIAHLDSAIERARDESRELALFFLDLDRFKSVNDTAGHACG 531

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINI 210
           D ++   + +L    G    + RLGG+EF        E    A LA  L   +      +
Sbjct: 532 DTLLQSAAARLTDCIGPGDVIARLGGDEFVILIEQRVEGMRIAQLAERLLAAMREPFDTV 591

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNR 254
           +     ++ +S G+A   H     T + R AD A+Y AK++GRNR
Sbjct: 592 NG--RYYLGVSIGVALYPHDGISGTDLLRSADAAMYRAKQNGRNR 634


>gi|170697268|ref|ZP_02888362.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria IOP40-10]
 gi|170137888|gb|EDT06122.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria IOP40-10]
          Length = 667

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 17/186 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDID 137
           SG  + E   +  R+++L+  D L+GL N  A    +G+           ++ I+F D+D
Sbjct: 218 SGIDVTEERNAQQRLTELANTDMLTGLPNRHAISERIGAALAADRTDMRGQVGILFLDLD 277

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSS---EQEAA 193
            FK++ND++GH  GD+++  +S  +     +   + RLGG+EF      G+    E  A 
Sbjct: 278 NFKRVNDHYGHITGDRLLQDVSTIISGCLPSGATLARLGGDEFLVLFEHGTRPLLEATAQ 337

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           I+   LR  I    + + +  SI I +        H + + T+I  AD A+YVAK+ G++
Sbjct: 338 IILERLRTPIHLGLMEVYTSCSIGIAMYP-----QHGDSLETLIRSADTAMYVAKEEGKH 392

Query: 254 RVVCFS 259
               FS
Sbjct: 393 TYRVFS 398


>gi|150020166|ref|YP_001305520.1| response regulator receiver modulated diguanylate cyclase
           [Thermosipho melanesiensis BI429]
 gi|149792687|gb|ABR30135.1| response regulator receiver modulated diguanylate cyclase
           [Thermosipho melanesiensis BI429]
          Length = 463

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 16/174 (9%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQIND 144
           +L   YN     +  D L+ + N +  +  L      S  +K  LS+   DID FK++ND
Sbjct: 292 KLLNEYNLSKSKTEFDELTKVYNRAFIMEKLKELLQLSLRQKIPLSVAMIDIDDFKKVND 351

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
            +GH  GD+V+  ++  +        +VGR GGEEF     G S  Q   +L   L K+ 
Sbjct: 352 TYGHLKGDEVLKKVAQIIRDNLRESDYVGRYGGEEFLVILPGISCNQAKKVLERILDKV- 410

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTI--IYRADQALYVAKKSGRNRV 255
                +  S    ++T SAG+   C K   S +  I RAD+ LY+AKK G+N+V
Sbjct: 411 --RNTDWKSLGVNNVTFSAGL---CCKPEKSMLGFIKRADKNLYIAKKRGKNQV 459


>gi|146283106|ref|YP_001173259.1| GGDEF domain-containing protein [Pseudomonas stutzeri A1501]
 gi|145571311|gb|ABP80417.1| GGDEF domain protein [Pseudomonas stutzeri A1501]
          Length = 396

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 90/177 (50%), Gaps = 13/177 (7%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDI 136
           +++ ++++E      R + LS  D L+G+ N  +FI +         +  E ++++  D+
Sbjct: 200 FVTLAMVRERAEQQYRHASLS--DPLTGIGNRRSFIDAGQALLQRCRARGEPVTLLLCDL 257

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK++ND FGH  GD+ +      +          GR+GGEEF A  L  ++   A++ 
Sbjct: 258 DFFKRLNDTFGHQAGDRALIDFGQVIARRMRRQDVFGRIGGEEF-ACLLADAD---ALVG 313

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            ++ + I      +       +++S G+A    +  +  ++ +AD+ALY AK +GRN
Sbjct: 314 REVAERIRGEFAAMPFAEQGQLSVSIGVATTTSRYELDELMAQADRALYAAKAAGRN 370


>gi|90022647|ref|YP_528474.1| response regulator receiver modulated diguanylate cyclase
           [Saccharophagus degradans 2-40]
 gi|89952247|gb|ABD82262.1| response regulator receiver modulated diguanylate cyclase
           [Saccharophagus degradans 2-40]
          Length = 303

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 11/174 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           +L  +   + +L+  D L+ +LN   F   +  Y         ++ ++  DID+FK  ND
Sbjct: 128 QLARANKELMKLANHDGLTKILNRRGFDEVMDRYWRQARRDQSEIGLLLIDIDHFKAYND 187

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILAND--LRK 201
            +GH  GD+ ++ ++  +      P+    R GGEEF A  L  +  E A+   D  L  
Sbjct: 188 TYGHVRGDETLSAVAHSIEKALMRPIDIAARYGGEEF-AVLLPCTGMEGAMTVGDRILEA 246

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           I + +  +++S     +T+S G+A          +I RAD ALY AK+ GRNRV
Sbjct: 247 IRDEAIPHLTSPVKSFLTVSIGVALSSGLASAEDLIKRADAALYQAKERGRNRV 300


>gi|311696619|gb|ADP99492.1| sensory box/GGDEF/GAF/EAL domain protein [marine bacterium HP15]
          Length = 788

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 17/171 (9%)

Query: 99  RISQLSRIDCLSGLLNHSA----FISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVG 151
           R+ + +  D L+GL N       F   L   N +   +S+ F D+D FK IND  GH VG
Sbjct: 352 RLEKAANYDSLTGLPNRRRLTEIFTQELHEANLRQGTVSLCFIDLDGFKGINDQQGHAVG 411

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSEQEAAILANDLRKI-IENSQI 208
           D V+  +S++L         +GRLGG+EF A    +  S   + IL    R I  +N+ +
Sbjct: 412 DAVLKIISERLKATIRQHDAIGRLGGDEFVAVLRDVEDSTVYSRILEAIRRPISYQNAVM 471

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +S+  S+ +T+    AE    +P  T++  ADQA+Y AK SG++    F 
Sbjct: 472 KLSA--SMGVTVYPDDAE----DP-DTLLRHADQAMYAAKDSGKDTYSLFD 515


>gi|289678524|ref|ZP_06499414.1| GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 149

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 74/147 (50%), Gaps = 27/147 (18%)

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAA 183
           E ++I+  DID+FK  NDN+GHP GD  +  L     Q     G   F  R GGEE    
Sbjct: 16  ENVAIILLDIDHFKSYNDNYGHPQGDTCLRLLCQKVQQSAHEHGAVAF--RFGGEEVLVL 73

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISS--------GPSIHITISAGIAERCHKEPIST 235
            +G+  Q         R++ E  Q +++         G +  +T+S G+A  C   P+++
Sbjct: 74  MIGNPVQ--------AREVAEALQTSVAELKLPHPVLGENALVTVSLGVA--CATAPMTS 123

Query: 236 ---IIYRADQALYVAKKSGRNRVVCFS 259
              +I  AD ALY AK++GRN  VCF+
Sbjct: 124 AENLIGAADNALYAAKRAGRN-CVCFA 149


>gi|291615020|ref|YP_003525177.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans
           lithotrophicus ES-1]
 gi|291585132|gb|ADE12790.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans
           lithotrophicus ES-1]
          Length = 961

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 31/174 (17%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S ++  D L+G+ N       LG          + L+I + D+D FK +ND +GH  GD
Sbjct: 792 LSHVANHDALTGIPNRRLLSDRLGQAIAHAQRSGKTLAICYIDLDGFKDVNDRYGHETGD 851

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++  ++ +L  V      + RLGG+EF             +L NDL + +E  Q+    
Sbjct: 852 MLLVDITRRLQDVLRAGDTLARLGGDEF------------VVLFNDLSQELECIQVLERI 899

Query: 213 GPSI---------HITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNR 254
             +I          I +SA +   C+    E   T++  ADQA+YVAKK+G+NR
Sbjct: 900 VQTIAMPVWFEERSIAVSASVGVTCYPADDEEGDTLLRHADQAMYVAKKAGKNR 953


>gi|213159035|ref|YP_002321033.1| GGDEF family protein [Acinetobacter baumannii AB0057]
 gi|215481944|ref|YP_002324126.1| WspR [Acinetobacter baumannii AB307-0294]
 gi|301345198|ref|ZP_07225939.1| WspR [Acinetobacter baumannii AB056]
 gi|301510689|ref|ZP_07235926.1| WspR [Acinetobacter baumannii AB058]
 gi|301595803|ref|ZP_07240811.1| WspR [Acinetobacter baumannii AB059]
 gi|213058195|gb|ACJ43097.1| GGDEF family protein [Acinetobacter baumannii AB0057]
 gi|213989027|gb|ACJ59326.1| WspR [Acinetobacter baumannii AB307-0294]
          Length = 568

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 9/164 (5%)

Query: 99  RISQLSRIDCLSGLLNH---SAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152
           ++  ++  D L+G+ N    S ++  + SY +K S   ++  DID FK +ND +GH VGD
Sbjct: 405 QLKNIANTDPLTGVSNRLALSEYLKIVESYPQKFSQTCLMIIDIDRFKHVNDQYGHIVGD 464

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
           +VI  ++DQL         + R GG+EF          +A +LA  +R  I   +I++S 
Sbjct: 465 QVIRRIADQLKANVRASDLIVRYGGDEFLILLEQVQFLDARLLAEKIRIAISLEEIDLSG 524

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   +H+++S G A          ++  AD++L  AK  GRN V
Sbjct: 525 TKEKLHVSVSIGFA--IGATSWMELLENADRSLLRAKARGRNVV 566


>gi|254447061|ref|ZP_05060528.1| response regulator receiver protein [gamma proteobacterium
           HTCC5015]
 gi|198263200|gb|EDY87478.1| response regulator receiver protein [gamma proteobacterium
           HTCC5015]
          Length = 430

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 19/174 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQINDNFGHPV 150
           +++  ++  D L+GL N       L      G+ ++  +S++  D+D FK  ND++GH  
Sbjct: 256 DQLQHMATTDPLTGLYNRREMERRLQEEWRRGARSDHFISVMLIDVDDFKAYNDHYGHQA 315

Query: 151 GDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           GD  +     QL  +FG         V R GGEEF      +  + A  LA  L   + +
Sbjct: 316 GDSCLT----QLGTLFGGAFQRASDCVARYGGEEFIVLLPETDAEAAQKLAEKLCHKVFD 371

Query: 206 SQI---NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +I   +  +   I ++I A  A+  H+     +I  AD+ALY AK+ GRN+VV
Sbjct: 372 QRIPHTHARAADRITVSIGAATAQSHHEGHYEHLIKAADEALYQAKEQGRNQVV 425


>gi|209544676|ref|YP_002276905.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532353|gb|ACI52290.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 974

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 85/172 (49%), Gaps = 11/172 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI+ L+  D L+GL N + F  +L        S  ++++++  D+D FK+IND  GH VG
Sbjct: 535 RITYLAHHDSLTGLANRAWFTEALDRALTLAASGTQRVAVIGIDLDKFKEINDQHGHAVG 594

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  L+ ++  V      V RLGG+EFAAA       E       L + +  SQ    
Sbjct: 595 DQVLVTLAARIRDVLEDDELVARLGGDEFAAAKRFDDMAELNAFIGRLEECL--SQPIGV 652

Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            G  +    S G++      E +  ++  AD A+Y AK + R   VCF + E
Sbjct: 653 DGFELRPNASIGVSLYPRDAETVEALMGDADLAMYRAKGALREH-VCFYEAE 703


>gi|299068720|emb|CBJ39958.1| putative signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum CMR15]
          Length = 906

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 88/172 (51%), Gaps = 14/172 (8%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPV 150
           +Y ++  L   D L+GL N +AFI  L +        + ++++  +D+FK +N+  GH +
Sbjct: 465 TYEQLRLLETKDSLTGLPNRAAFIERLDARLALPSTGQAALLYIGLDHFKTVNEAMGHHI 524

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           G++V+   + ++    G    + RLGG++F  A       E    A  L +++ ++    
Sbjct: 525 GNQVLNVAAQRIRADVGQRALLARLGGDQFCVAI------EVPDRAETLAQLVLDALAKP 578

Query: 211 SSGPSIHITISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRNRVVCFS 259
            SG    + +SA I      E  S   T++ RA+ A+Y AK++GRNR+  +S
Sbjct: 579 FSGGEREVHLSASIGVAMFPEDGSDAATLVSRAEAAMYRAKENGRNRMARYS 630


>gi|300117863|ref|ZP_07055630.1| sensory box/GGDEF family protein [Bacillus cereus SJ1]
 gi|298724727|gb|EFI65402.1| sensory box/GGDEF family protein [Bacillus cereus SJ1]
          Length = 735

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 91/182 (50%), Gaps = 23/182 (12%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144
           L+    ++  L+  D L+GL N   F   L         S N+ ++++F D+D FK+IND
Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 354

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKI- 202
             GH VGD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  I 
Sbjct: 355 RLGHGVGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 414

Query: 203 -----IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                I++ +++I+  PSI I +            ++ ++  AD A+Y AK +G+NR V 
Sbjct: 415 NKPFFIKDEELSIT--PSIGIAMYPDCGTN-----VTELMKNADMAMYRAKANGKNRFVF 467

Query: 258 FS 259
           FS
Sbjct: 468 FS 469


>gi|261253752|ref|ZP_05946325.1| GGDEF family protein [Vibrio orientalis CIP 102891]
 gi|260937143|gb|EEX93132.1| GGDEF family protein [Vibrio orientalis CIP 102891]
          Length = 505

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 88/189 (46%), Gaps = 17/189 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDY 138
           Y    +  +L      +  L+  D L+ + N  +      S  E+     +S++  DIDY
Sbjct: 320 YRINEVFNQLEAKQKELEWLALHDSLTKVGNRRSLQQYWDSLLEQRDQRHISLLLIDIDY 379

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAI 194
           FK  ND++GH  GD+V+  ++  LV    TP     FV R GGEEF       S+ +   
Sbjct: 380 FKPFNDHYGHIEGDRVLQQVASCLV---QTPTQSEKFVARFGGEEFCVVLSSESKIDNQQ 436

Query: 195 LANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKS 250
            A  LR  I   QI     P +  IT+S G+A+ C  +P   +  I   AD ALY AK  
Sbjct: 437 EAEWLRASIAELQILHEYSPIAGGITVSIGVAD-CALQPFDELQDIFLVADAALYQAKDL 495

Query: 251 GRNRVVCFS 259
           GRN+ V  S
Sbjct: 496 GRNKFVIHS 504


>gi|254518217|ref|ZP_05130273.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium sp.
           7_2_43FAA]
 gi|226911966|gb|EEH97167.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium sp.
           7_2_43FAA]
          Length = 960

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 96/190 (50%), Gaps = 19/190 (10%)

Query: 85  ISGSI--LKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFF-D 135
           ISGSI  + E   +  +I  L+  D L+GL N   F+  +      G  NE + + F  D
Sbjct: 516 ISGSISDITERKKAEEKIETLAFYDQLTGLPNKHMFLDKIDDELLRGLKNEYIGVAFLID 575

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAI 194
           ID FK IND  GH  GD+ +  ++ + + +     F+ +L G+EF    L  + + EA  
Sbjct: 576 IDNFKNINDTLGHDYGDEFLKCIAKEFIKLLDNDEFICKLDGDEFLILMLDVNGKAEAEE 635

Query: 195 LANDLRKIIEN----SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +AN + ++ +N     + NI +  SI I+I    A        S ++  +D A+Y AK++
Sbjct: 636 MANKILELFKNPFKVKEKNIFTSVSIGISIIPNDARNK-----SELLKNSDIAMYKAKEN 690

Query: 251 GRNRVVCFSD 260
           G+NR + + +
Sbjct: 691 GKNRYLFYRE 700


>gi|218532674|ref|YP_002423490.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Methylobacterium chloromethanicum CM4]
 gi|218524977|gb|ACK85562.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Methylobacterium chloromethanicum CM4]
          Length = 795

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 9/163 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
           ++I  L+  D L+GL N ++F   L            KL+++  D+D FK++ND FGH  
Sbjct: 359 SQIQFLAHHDALTGLANRTSFSKRLDQEMRAADVGGRKLAVLCLDLDRFKEVNDLFGHAA 418

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD ++  ++  +         + RLGG+EFA     +   EA  LA  + + + + ++  
Sbjct: 419 GDAMLESVAHIVSAELDDSQMMARLGGDEFAVLMPCAGPSEAGRLAERILEALRSGRVE- 477

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           + GP I  +I   +     +E  + ++  AD ALY AK  GR 
Sbjct: 478 AGGPQIATSIGVALYPDDARE-RAALLSNADTALYRAKSEGRG 519


>gi|119961921|ref|YP_948931.1| response regulator/GGDEF domain-containing protein [Arthrobacter
           aurescens TC1]
 gi|119948780|gb|ABM07691.1| response regulator/GGDEF domain protein [Arthrobacter aurescens
           TC1]
          Length = 302

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 85/189 (44%), Gaps = 8/189 (4%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---- 130
           S+ I LL      S+  +L    + +++ +R D L+ L N       LG+ +   +    
Sbjct: 109 SLHIRLLAAQRITSLHADLARYRSALTEQARTDPLTKLHNRLKLAEDLGTLHGGGTPDLD 168

Query: 131 --IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
             +   D+D FK  ND +GH  GD  +  ++  L         V R GGEEF        
Sbjct: 169 YCLAMVDVDNFKSYNDIYGHQAGDAALISIASTLAGEVRKSDGVYRFGGEEFLLLLRDQR 228

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYV 246
             +A  +   +R  ++  +I  S  P   +TISAGI+     H+     ++  AD ALY 
Sbjct: 229 AADARTVMERVRTAVQELRIEHSGDPDGVLTISAGISAFTDGHRAGTEQLLREADLALYA 288

Query: 247 AKKSGRNRV 255
           AK SGRNRV
Sbjct: 289 AKASGRNRV 297


>gi|126698286|ref|YP_001087183.1| putative signaling protein [Clostridium difficile 630]
          Length = 837

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 13/165 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPV 150
           NR+   ++ D L+ + N +A+I  L + N       +  +++  DIDYFK IND +GH +
Sbjct: 674 NRLLDKAQRDSLTNIYN-AAYIRKLTAQNLLNLSTEKNGALLIIDIDYFKSINDTYGHLL 732

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQIN 209
           GDKV+  ++  L   F     VGRLGG+EF+        +E  I   ND+   I    I 
Sbjct: 733 GDKVLIDVAKVLDESFAKNDIVGRLGGDEFSVYINDIINKEELINKCNDVYNHIH--LIK 790

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + +G S+ I++   IA+   +     +   AD ALY +K+ GRNR
Sbjct: 791 LPNGESLSISMGVVIAKPGQE--YDELYQIADNALYDSKRQGRNR 833


>gi|307610059|emb|CBW99594.1| hypothetical protein LPW_13641 [Legionella pneumophila 130b]
          Length = 792

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 12/164 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R++  +  D L+GL N +A    L          N  LS++F DID FK IND+ GH  G
Sbjct: 352 RLAYQANHDSLTGLPNRTALYDRLDHAINYCKRLNTSLSVLFLDIDNFKLINDSLGHDAG 411

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++   S +L         V R GG+EF    + +  ++  ++A ++ K +    I + 
Sbjct: 412 DILLYEFSRRLKGCIRHSDTVARFGGDEFVLLLMTTEPKDVILVAQNILKAVAQP-IKLP 470

Query: 212 SGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRN 253
           +   I +T S GI+    K+ I  ST++  +D A+Y+AKK GRN
Sbjct: 471 TQEVI-VTTSIGIS-LFPKDGIDASTLLKNSDTAMYLAKKEGRN 512


>gi|77458397|ref|YP_347902.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1]
 gi|77382400|gb|ABA73913.1| putative GGDEF domain membrane protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 382

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 98/196 (50%), Gaps = 13/196 (6%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE 127
            +SLV  ++ I L+   ++G+   E +    +I++L+  D L+ L N  A         +
Sbjct: 186 QISLVEGAMAIMLIALSMTGT---ERYRREKQIAELAARDPLTALYNRRALEVRAPRLLD 242

Query: 128 KLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
           ++S      ++  DID FK +ND +GH  GD+++  LS+ +  V        RLGG+EF 
Sbjct: 243 EVSSARPGALLLIDIDNFKLVNDLYGHTAGDRLLIALSEMIRAVLPNGALAARLGGDEFV 302

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYR 239
                +S  +   L + LR+  +       + P   +T+S G A+   + P  ++ +I +
Sbjct: 303 MLLGDASHAQIMDLGSALREQFQQMTSQTYTTPQ-AVTLSIG-AKVFDQPPASLAALIEQ 360

Query: 240 ADQALYVAKKSGRNRV 255
            D ALY +K+ GRNR+
Sbjct: 361 GDSALYESKRGGRNRI 376


>gi|120555824|ref|YP_960175.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei
           VT8]
 gi|120325673|gb|ABM19988.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei
           VT8]
          Length = 312

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 13/179 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           ++L     ++ + S  D L+GL N   F +       S     + LS++  DID+FKQ N
Sbjct: 134 EKLIALQKKLEEYSFKDGLTGLSNRRMFDTVIEDTWLSAQRNRQPLSLILLDIDHFKQYN 193

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILAND--LR 200
           D +GH  GD+ +  +S  L      P  FVGR GGEEF    L  S+ +AA+   +  + 
Sbjct: 194 DLYGHIQGDECLRRVSSVLAKAIKRPKDFVGRFGGEEF-VIVLPESDADAAVRVAERCIS 252

Query: 201 KIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +++     +  +  S  +T+S GI        + ++  +   D  LY AK +GRNR+V 
Sbjct: 253 ELLREQIPHADNSASQLVTLSMGIGTIIPSQNDSLTEFLATVDGRLYEAKDAGRNRIVA 311


>gi|109898406|ref|YP_661661.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109700687|gb|ABG40607.1| response regulator receiver modulated diguanylate cyclase
           [Pseudoalteromonas atlantica T6c]
          Length = 306

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 85/166 (51%), Gaps = 9/166 (5%)

Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+ +D L+G+ N        +  ++     N+ +S++  D+D FKQ ND +GH V D
Sbjct: 141 LKKLAYLDGLTGVYNRRYLDEYLAKQVAQAKRTNQPISLLMVDVDLFKQYNDEYGHLVAD 200

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
             +  ++  +      P     R GGEEF      + E+ A  +A  +++ ++  +I+  
Sbjct: 201 DQLKLVALTVRSSLNRPTDIAARYGGEEFTCVLPNTDERGAKHVAKKIQQAVDQLKISHR 260

Query: 212 SGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVV 256
             P   +T+S G++     +  S+ +I  AD+ LY AK +GRN+VV
Sbjct: 261 LSPHQILTVSIGVSTILPDQNYSSDLISIADKNLYKAKHTGRNKVV 306


>gi|315127612|ref|YP_004069615.1| response regulator/GGDEF domain protein [Pseudoalteromonas sp.
           SM9913]
 gi|315016126|gb|ADT69464.1| response regulator/GGDEF domain protein [Pseudoalteromonas sp.
           SM9913]
          Length = 410

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 81/169 (47%), Gaps = 20/169 (11%)

Query: 100 ISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152
           I + +  D L+ L N   F      SL  + +  +   +   DID+FK IND +GH  GD
Sbjct: 250 IKRQANTDYLTKLPNRRYFFEEANKSLKQFKKAKAPAMLAMLDIDHFKAINDTYGHDAGD 309

Query: 153 KVIAFLSDQLVVVFGT---PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +V+  L+    V F        V RLGGEEFA      +EQEA       R  IE +   
Sbjct: 310 EVLKGLA----VCFNKYFENQLVARLGGEEFAVFFTELTEQEALKRLESFRLFIELNSHE 365

Query: 210 ISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256
            S    I  T+S G +   H E   I  ++ +AD  LY AK+SGRN+VV
Sbjct: 366 FSQA-QIKFTLSIGFS---HSETYQIDELLKQADLKLYKAKESGRNKVV 410


>gi|170722389|ref|YP_001750077.1| diguanylate cyclase [Pseudomonas putida W619]
 gi|169760392|gb|ACA73708.1| diguanylate cyclase [Pseudomonas putida W619]
          Length = 386

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 102/201 (50%), Gaps = 15/201 (7%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG- 123
           L +++S+ I ++T+ +   Y  G +L     S +R+  L+  D L+G  N  A +     
Sbjct: 182 LKQSISVAIGTVTVMM---YSIGLVLMAKERSESRLKHLALRDVLTGTYNRRAILERFAV 238

Query: 124 ----SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
               +  E+  L++   D+D+FK+IND +GH  GD+V+     QL         +GR GG
Sbjct: 239 ELDRARGERSSLAVAMIDLDHFKRINDLYGHLAGDEVLCHCVRQLEQRLRHGDSLGRYGG 298

Query: 178 EEFAAAALGSSEQEAAILA-NDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPIS 234
           EEF    L  ++++ A+ A   LR+ I  S  +  +G  I +  S G+        +  +
Sbjct: 299 EEF-LLLLPHADRDGAMAALQGLREAIALSPAHF-AGDQITLRFSVGLWCGVPGPHDTTA 356

Query: 235 TIIYRADQALYVAKKSGRNRV 255
           +++ +AD ALY AK +GRN V
Sbjct: 357 SLLAQADAALYQAKAAGRNTV 377


>gi|116328538|ref|YP_798258.1| GGDEF domain-containing protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331267|ref|YP_800985.1| GGDEF domain-containing protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116121282|gb|ABJ79325.1| GGDEF domain receiver component of a two- component response
           regulator [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124956|gb|ABJ76227.1| GGDEF domain receiver component of a two- component response
           regulator [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 330

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 11/162 (6%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +SR D L+GL N   F   L +  ++       ++++  DID+FK  ND +GH  GD+ +
Sbjct: 160 ISRTDSLTGLYNRRYFYEILTTEWKRCWRTGAGIALIMLDIDHFKLYNDTYGHQGGDQCL 219

Query: 156 AFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
             ++  +         V  R GGEEFA     ++E  A +++ ++ + +E   I  S+  
Sbjct: 220 KQVARAIRDCARRAGDVAARYGGEEFAVILPETNESNAVVVSRNILENVEKMAIPHSASK 279

Query: 215 SIHI-TISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
           +  I T+S G+A      +  I+ +I RAD+ALY+AK+ GRN
Sbjct: 280 TNSIVTVSIGMATLSPSPENSITELIERADKALYLAKEEGRN 321


>gi|109899932|ref|YP_663187.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109702213|gb|ABG42133.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
          Length = 628

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 12/166 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++L+  D L+GL N    I  L         Y   L +   D+D+FK+IND++GH VGD
Sbjct: 456 LTKLAITDDLTGLYNRRHIIEQLERQVHAANRYKYDLCVAIIDLDFFKKINDSYGHAVGD 515

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQINI 210
           +V+   SD           +GR+GGEEF      ++ Q+     + LR  I   N+ ++I
Sbjct: 516 RVLIEFSDICSKNLRQSDIIGRIGGEEFLVILPHTNLQDGYNALDGLRHKISMVNNVVDI 575

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                + I+ S G+           ++  AD ALY AK  GR++VV
Sbjct: 576 K---DLSISASIGLTFNTDSRESMQLMADADTALYQAKTQGRDQVV 618


>gi|95930950|ref|ZP_01313679.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95132959|gb|EAT14629.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 368

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 82/177 (46%), Gaps = 9/177 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           +EL  +  ++  L+  D L+GL N    + SL        S    L+ +  D D FK+IN
Sbjct: 192 QELAEANQKLGDLAMTDFLTGLHNRRYALLSLETLWQEADSEGHPLACIMVDADGFKEIN 251

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GDKV+  LS QL     T   V R+GG+EF      +    A  +   L + +
Sbjct: 252 DTYGHDAGDKVLCLLSRQLKETVRTDDIVCRMGGDEFLIICPKTDIVGAMSVGELLHQAV 311

Query: 204 ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              Q  +  G    +  S G+A    H   I  ++  AD+ LY AKK+G+N V  F 
Sbjct: 312 CQLQYPL-GGDLCQVRASIGVAALTQHVRTIEDLLVAADKGLYEAKKAGKNCVKRFQ 367


>gi|326201979|ref|ZP_08191849.1| diguanylate cyclase with GAF sensor [Clostridium papyrosolvens DSM
           2782]
 gi|325987774|gb|EGD48600.1| diguanylate cyclase with GAF sensor [Clostridium papyrosolvens DSM
           2782]
          Length = 558

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 82/167 (49%), Gaps = 13/167 (7%)

Query: 97  YNRISQLSRIDCLSGLLN----HSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHP 149
           Y  + +++ +D L+G+ N    H  F +      EK   LS+V  DID+FK  ND +GH 
Sbjct: 386 YANLQEMATVDGLTGVYNRVYFHEKFEAEFKMAEEKGYNLSLVILDIDFFKIFNDTYGHL 445

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  +         + R GGEEF      +S Q+A      LR  I  + I 
Sbjct: 446 FGDVVLKEVAQTVKNNLRGTDTIARFGGEEFVLILPRTSIQQAHEKVEFLRTKIAGNVIK 505

Query: 210 ISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRN 253
             +  S  +T S GIA  C+ E  S    +I  AD ALY AK++GRN
Sbjct: 506 -DNLISASVTASFGIA--CYPETSSNQVGLIRDADNALYKAKENGRN 549


>gi|260597953|ref|YP_003210524.1| hypothetical protein CTU_21610 [Cronobacter turicensis z3032]
 gi|260217130|emb|CBA30929.1| hypothetical protein CTU_21610 [Cronobacter turicensis z3032]
          Length = 352

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 11/194 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSL 122
           +L +ISI + L L  +S ++   L      + + +  D L  + N         A +   
Sbjct: 159 TLPLISIYV-LALSMVSHALSARLREKTRELERYANTDPLLNIANRRRLEHDIDAALQRF 217

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
             + +  +++F DID FK  ND +GH  GD+++   S+ L         V R GG+EF  
Sbjct: 218 HKHEQPAALMFIDIDDFKAANDRYGHEAGDQLLVTFSETLREATRAGDTVARFGGDEFVV 277

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRAD 241
               +S   A  +A+  R + + +Q+N+    ++  T+S GIA         +  +  AD
Sbjct: 278 LLPDTSFGRACAIAD--RIMAQAAQMNVFPDSALRCTLSIGIARATADMRGAAQWLKAAD 335

Query: 242 QALYVAKKSGRNRV 255
            ALY AK+ G+NR+
Sbjct: 336 DALYSAKREGKNRI 349


>gi|288941039|ref|YP_003443279.1| periplasmic/7TM domain sensor diguanylate cyclase [Allochromatium
           vinosum DSM 180]
 gi|288896411|gb|ADC62247.1| periplasmic/7TM domain sensor diguanylate cyclase [Allochromatium
           vinosum DSM 180]
          Length = 579

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 12/165 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            +  Q +  D L+GL N       +S L       +++  D+D FK +ND  GH  GD V
Sbjct: 399 QQAQQRAETDPLTGLFNREGLSRRVSDLCDRRAPYALMVVDLDRFKPVNDQLGHEAGDAV 458

Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN--SQINI 210
           +  +++++  +V      V R+GG+EF     G + E +A ++A    K++E+  + I  
Sbjct: 459 LIAVAERMRALVRAEGDSVARIGGDEFVLILRGMTHETDAGVVAA---KLLESLATAIPT 515

Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            +G  + I  S GIA      + ++ ++  ADQA+Y AK+ GRNR
Sbjct: 516 PAG-EVRIGASIGIALSPADGQQLARLLQVADQAMYRAKQDGRNR 559


>gi|239503865|ref|ZP_04663175.1| putative GGDEF family protein [Acinetobacter baumannii AB900]
          Length = 568

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 9/164 (5%)

Query: 99  RISQLSRIDCLSGLLNH---SAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152
           ++  ++  D L+G+ N    S ++  + SY +K S   ++  DID FK +ND +GH VGD
Sbjct: 405 QLKNIANTDPLTGVSNRLALSEYLKIVESYPQKFSQTCLMIIDIDRFKHVNDQYGHIVGD 464

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
           +VI  ++DQL         + R GG+EF          +A +LA  +R  I   +I++S 
Sbjct: 465 QVIRRIADQLKANVRASDLIVRYGGDEFLILLEQVQFLDARLLAEKIRIAISLEEIDLSG 524

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   +H+++S G A          ++  AD++L  AK  GRN V
Sbjct: 525 TQEKLHVSVSIGFA--IGATSWMELLENADRSLLRAKARGRNVV 566


>gi|254416220|ref|ZP_05029974.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196176902|gb|EDX71912.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 332

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVG 151
           ++ +L+ +D L+ + N   F          S  E+  LS++  D+DYFK  ND+ GH  G
Sbjct: 140 QLKRLATLDSLTQVANRHRFDEYFNQVWRISRREQWVLSLLLCDVDYFKLYNDSKGHQAG 199

Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D+ +  ++  +  V   P   V R GGEEFA     +  Q A  +   ++  +    +  
Sbjct: 200 DECLYKVAQAMKQVVKRPADLVARYGGEEFAVILPNTPAQGALQVGKFIQSKLTQLGLTH 259

Query: 211 SSGP-SIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVV 256
              P    +T+S G++    CH+     +I  ADQALY AK++GR+R V
Sbjct: 260 PRSPIKNSVTLSVGVSSTVPCHQTSPEALIAAADQALYQAKETGRDRAV 308


>gi|167756466|ref|ZP_02428593.1| hypothetical protein CLORAM_01999 [Clostridium ramosum DSM 1402]
 gi|167703874|gb|EDS18453.1| hypothetical protein CLORAM_01999 [Clostridium ramosum DSM 1402]
          Length = 985

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 15/206 (7%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y+ V NL L++     + ++  ++ +I+++  I Y R       D L+GLLN  AFI  +
Sbjct: 519 YVFV-NLRLLVNDNAYTGVIENVTNTIVEKNVIEYERDH-----DALTGLLNRRAFIRIM 572

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            S  E         +++  D+D  K INDN+GH +GD  I+  ++  V        + R+
Sbjct: 573 NSLFENEINKIKIAALLMLDLDNLKYINDNYGHEIGDNYISKAAETFVNSTPENTIISRI 632

Query: 176 GGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPI 233
            G+EF     G  ++     L N L++ I  + I ++   + H+  S GIA      E  
Sbjct: 633 SGDEFFVFFYGYDDENVIKQLINKLKEAISKAFIPLADNSNFHVNASGGIAWYPRDSESF 692

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
             + + AD A+Y  K++ +  +  F+
Sbjct: 693 EKLQHYADYAMYKIKRTSKGNLTEFN 718


>gi|87118919|ref|ZP_01074818.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain-like [Marinomonas sp. MED121]
 gi|86166553|gb|EAQ67819.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain-like [Marinomonas sp. MED121]
          Length = 834

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 17/175 (9%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL     +++ L+  D L+GL N           I+       K  ++F D+D FK +N
Sbjct: 388 QELQAERIKLNHLAHHDVLTGLANRLQIYQDIEHCINKAKQDKGKFGLLFLDVDQFKNVN 447

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILAND 198
           DN GH +GD+++  ++ +L     +   V RLGG+EF         LG+ +  A  L + 
Sbjct: 448 DNLGHAMGDQLLKQIAKRLRETVASDGIVARLGGDEFMIIYPDEDHLGTLQDRAEELNDI 507

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           L +  E +  ++ +G SI + +        H + + T++  AD A+Y +K+ G N
Sbjct: 508 LNQPFELNMTSVLAGSSIGVCLYPQ-----HGDTLETLVSNADVAMYHSKRKGPN 557


>gi|320332724|ref|YP_004169435.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
 gi|319754013|gb|ADV65770.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
          Length = 816

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 87/160 (54%), Gaps = 7/160 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++   +R D L+GLLN +AF  +L +  +    L ++F D+D FKQ+ND  GHP GD ++
Sbjct: 381 QLEHQTRHDALTGLLNRAAFEGTLHAAMQSGAPLGVLFIDLDRFKQVNDTLGHPAGDALL 440

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGP 214
             ++D+L         V R GG+EF    L    Q+ A +    +++++   + ++  G 
Sbjct: 441 MLVADRLRQGVRDGDVVARQGGDEF--IVLLRHVQDHADVELVAQRLLDALSLPVTLEGR 498

Query: 215 SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           ++ +T S G+A   H    ++T+   AD A+Y AK+  R+
Sbjct: 499 TLVVTASIGMALFPHDGADVTTLHKHADLAMYSAKRDRRS 538


>gi|295703071|ref|YP_003596146.1| response regulator diguanylate cyclase/phosphodiesterase [Bacillus
           megaterium DSM 319]
 gi|294800730|gb|ADF37796.1| response regulator diguanylate cyclase/phosphodiesterase [Bacillus
           megaterium DSM 319]
          Length = 535

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 86/164 (52%), Gaps = 13/164 (7%)

Query: 107 DCLSGLLN-------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G  N       +S  +SS     +   +   D+D+FK+IND +GH +GD+V+    
Sbjct: 237 DELTGAYNRTYLKEIYSQQLSSYDRLKDPFCLAILDLDFFKRINDRYGHLMGDRVLQAFV 296

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINISSGPSIH 217
           + +         + R GGEEF      ++ +EA  + N   +++++   ++      S +
Sbjct: 297 EYMKHEIRPTDHIFRYGGEEFILLLPKTNIKEAETVLN---RLLDSFVKKVFTHQSNSFY 353

Query: 218 ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
            + S G+ E  + E P+   +++AD+ALY+AK+SGR ++V  S+
Sbjct: 354 CSFSGGVVEVHNTEWPLEKALHQADEALYIAKESGRQKIVASSE 397


>gi|254788102|ref|YP_003075531.1| motility regulator [Teredinibacter turnerae T7901]
 gi|237685689|gb|ACR12953.1| motility regulator [Teredinibacter turnerae T7901]
          Length = 897

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 99/195 (50%), Gaps = 22/195 (11%)

Query: 81  LLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           +LG+++  + + E +I   R+  ++  D L+GL N   F   L            ++ ++
Sbjct: 440 ILGFLATFADITERYIHQERLRHVAEYDSLTGLANRYLFQDRLKQAFFNSEREGSEVVVM 499

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE- 191
           F D+D FK +ND+ GH VGDK++  + ++L+ +      V R GG+EF    L   E++ 
Sbjct: 500 FLDLDGFKIVNDSLGHAVGDKLLKKVGERLLNILRRVDTVARFGGDEF-VILLNPHEKQL 558

Query: 192 --AAILANDLRKIIENSQINISSGPSIHIT----ISAGIAERCHKEPISTIIYRADQALY 245
             A + +  ++ + +  QI+   G  I +T    IS G A+    E    ++ +AD ALY
Sbjct: 559 DVAEVASKIIQSLAQTYQID---GNEICVTSSIGISGGTAKNSSPE---KLMKQADAALY 612

Query: 246 VAKKSGRNRVVCFSD 260
           +AK  G+N    F++
Sbjct: 613 LAKSEGKNNFQLFNE 627


>gi|126665574|ref|ZP_01736556.1| sensory box/GGDEF/GAF/EAL domain protein [Marinobacter sp. ELB17]
 gi|126630202|gb|EBA00818.1| sensory box/GGDEF/GAF/EAL domain protein [Marinobacter sp. ELB17]
          Length = 806

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 20/176 (11%)

Query: 100 ISQLSRIDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGD 152
           + Q +  D L+GL N       F   L   +++   LSI F D+D FK IND++GH VGD
Sbjct: 367 LEQAANFDSLTGLPNRRRLTELFEQELTFADQRQSALSICFIDLDGFKGINDDYGHSVGD 426

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LANDLRKIIENSQINI 210
            V+  ++ +L  V      + RLGG+EF  A +   E  A    +   +R+ I +  + +
Sbjct: 427 AVLKTVAARLQHVLRECDIIARLGGDEF-VAIIRDVENNAVYERMLEAIRRPISHQDLTL 485

Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENN 264
               S+ +T+         ++P +   ++  ADQA+Y AK +GRNR   F D E +
Sbjct: 486 DLAASMGVTLYP-------RDPSAPDLLLRHADQAMYAAKDAGRNRYSIF-DFETH 533


>gi|331015153|gb|EGH95209.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 674

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 21/167 (12%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N +  ++ L         + E+ +++F D+D FK +ND+ GH  GD+++  ++
Sbjct: 246 DELTALFNRAYLMNELADAFSNPDHHYERATVLFLDLDGFKVVNDSMGHLAGDQLLKRVA 305

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINIS---SGP 214
           ++L         + R+GG+EFA   +G  + E A+      K+ E   SQ++ +    G 
Sbjct: 306 NRLQNCVRANDVLARIGGDEFAILLVGKDQPETAV------KMAERIVSQLHAAIEIEGQ 359

Query: 215 SIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I I+ S GI  A   H +P   ++  AD A+Y AKK GR R   F+
Sbjct: 360 DIFISCSIGIVTAGEGHSKP-EDLLRDADVAMYSAKKQGRGRWSLFN 405


>gi|302129938|ref|ZP_07255928.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato NCPPB 1108]
          Length = 674

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 21/167 (12%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N +  ++ L         + E+ +++F D+D FK +ND+ GH  GD+++  ++
Sbjct: 246 DELTALFNRAYLMNELADAFSNPDHHYERATVLFLDLDGFKVVNDSMGHLAGDQLLKRVA 305

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINIS---SGP 214
           ++L         + R+GG+EFA   +G  + E A+      K+ E   SQ++ +    G 
Sbjct: 306 NRLQNCVRANDVLARIGGDEFAILLVGKDQPETAV------KMAERIVSQLHAAIEIEGQ 359

Query: 215 SIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I I+ S GI  A   H +P   ++  AD A+Y AKK GR R   F+
Sbjct: 360 DIFISCSIGIVTAGEGHSKP-EDLLRDADVAMYSAKKQGRGRWSLFN 405


>gi|301383442|ref|ZP_07231860.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato Max13]
          Length = 674

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 21/167 (12%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N +  ++ L         + E+ +++F D+D FK +ND+ GH  GD+++  ++
Sbjct: 246 DELTALFNRAYLMNELADAFSNPDHHYERATVLFLDLDGFKVVNDSMGHLAGDQLLKRVA 305

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINIS---SGP 214
           ++L         + R+GG+EFA   +G  + E A+      K+ E   SQ++ +    G 
Sbjct: 306 NRLQNCVRANDVLARIGGDEFAILLVGKDQPETAV------KMAERIVSQLHAAIEIEGQ 359

Query: 215 SIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I I+ S GI  A   H +P   ++  AD A+Y AKK GR R   F+
Sbjct: 360 DIFISCSIGIVTAGEGHSKP-EDLLRDADVAMYSAKKQGRGRWSLFN 405


>gi|316932201|ref|YP_004107183.1| PAS/PAC sensor -containing diguanylate cyclase [Rhodopseudomonas
           palustris DX-1]
 gi|315599915|gb|ADU42450.1| diguanylate cyclase with PAS/PAC sensor [Rhodopseudomonas palustris
           DX-1]
          Length = 313

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 84/176 (47%), Gaps = 19/176 (10%)

Query: 100 ISQLSR---IDCLSGLLNHSAFISSLGSYNEKL----------SIVFFDIDYFKQINDNF 146
           I QL R    D L+GL N + F +    Y E +          ++V  D+D FK++ND  
Sbjct: 135 IEQLRRQAETDPLTGLANRAMFQAR---YREVVGDSLNHGFASALVLIDLDGFKELNDTL 191

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD  +  ++ +L   F     + RLGG+EF +  L +    A I     R I+  S
Sbjct: 192 GHLAGDACLCEVAQRLRRAFHNAGLISRLGGDEF-SIILRAPTDPARIAEVLQRTIVMLS 250

Query: 207 QINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +    +G  I ++ S G A   R H+  I+ +   AD ALY AK +GRNRV    D
Sbjct: 251 RPLFWNGHRIAVSASIGAALIGRPHRRRIADLFEEADLALYQAKAAGRNRVHLIGD 306


>gi|255099821|ref|ZP_05328798.1| putative signaling protein [Clostridium difficile QCD-63q42]
          Length = 832

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 13/165 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPV 150
           NR+   ++ D L+ + N +A+I  L + N       +  +++  DIDYFK IND +GH +
Sbjct: 669 NRLLDKAQRDSLTNIYN-AAYIRKLTAQNLLNLSTEKNGALLIIDIDYFKSINDTYGHLL 727

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQIN 209
           GDKV+  ++  L   F     VGRLGG+EF+        +E  I   ND+   I    I 
Sbjct: 728 GDKVLIDVAKVLDESFAKNDIVGRLGGDEFSVYINDIINKEELINKCNDVYNHIH--LIK 785

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + +G S+ I++   IA+   +     +   AD ALY +K+ GRNR
Sbjct: 786 LPNGESLSISMGVVIAKPGQE--YDELYQIADNALYDSKRQGRNR 828


>gi|153816991|ref|ZP_01969658.1| chemotaxis protein [Vibrio cholerae NCTC 8457]
 gi|126512401|gb|EAZ74995.1| chemotaxis protein [Vibrio cholerae NCTC 8457]
          Length = 605

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 79/158 (50%), Gaps = 12/158 (7%)

Query: 107 DCLSGLLNHSAFISSL--------GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           D L+GL N S+F             S N K    I   DID FK IND++GH  GD ++ 
Sbjct: 445 DFLTGLPNRSSFFQHAELIFNLLNNSVNGKDNTCIAILDIDKFKDINDSYGHVYGDSILK 504

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             +D L   F     + R+GGEEF      ++   A  +    R+IIE    N+S   ++
Sbjct: 505 QTADLLSKQFRDIDILARMGGEEFIILLKATNLPLAFKIIERCREIIEKHSFNLSD-ETV 563

Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           ++TISAG+A+   + + +   I+ AD  LY +K  GRN
Sbjct: 564 NLTISAGLAQFSKEYKTLDEWIHAADCKLYESKHCGRN 601


>gi|300309604|ref|YP_003773696.1| diguanylate cyclase [Herbaspirillum seropedicae SmR1]
 gi|300072389|gb|ADJ61788.1| diguanylate cyclase protein [Herbaspirillum seropedicae SmR1]
          Length = 696

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 9/178 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG----SYNEKLSIVFFDIDYFKQINDNF 146
           ++L     R+   +  D L+GLL  + F+++         E L ++F D+D FK IND +
Sbjct: 262 RDLHQFAERMRYQAEHDLLTGLLGRAGFMAAAQAMAARREEVLCMMFLDLDGFKVINDAY 321

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILANDLRKIIEN 205
           GH  GD+V+  ++ +L         + RLGG+EF    AL +  +   +LA   R++IE 
Sbjct: 322 GHDAGDQVLVEVARRLQGCLPAGATLARLGGDEFVILYALDAQAELPELLA---RRLIEV 378

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            +   +     HI +S GI     ++ I  ++  +D A+Y AK+ GRN+   F++  N
Sbjct: 379 VRQPFARLAHRHIGLSLGIT-LSDRDDIDEMLVCSDAAMYQAKRRGRNQFCVFNETLN 435


>gi|332524151|ref|ZP_08400381.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2]
 gi|332107490|gb|EGJ08714.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2]
          Length = 340

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 87/195 (44%), Gaps = 28/195 (14%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------------------GSYNE 127
           GS+L+ ++ ++  +   S  D L+GLLN   F  S                    G    
Sbjct: 135 GSVLR-VYRNFQSLLDYSERDTLTGLLNRKTFDESFMRCTVPLPPPSRDALGQRRGGGAA 193

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            L +V  DID+FK +ND  GH +GD+V+  LS  +  VF     + R GGEEF       
Sbjct: 194 WLGVV--DIDHFKHVNDCHGHLIGDEVLLLLSRLMRGVFRQGDQLYRFGGEEFVVLMRCD 251

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYV 246
             + A      LR  IE         P +  IT+S G       +  S+   RADQA+Y 
Sbjct: 252 DGEAAGRAFERLRTTIEEHAF-----PRVGRITVSIGFTAVRPGDTPSSAFERADQAVYF 306

Query: 247 AKKSGRNRVVCFSDI 261
            K++GRNRV   +++
Sbjct: 307 VKQTGRNRVASHTEL 321


>gi|330807737|ref|YP_004352199.1| Response regulator, PleD family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375845|gb|AEA67195.1| putative Response regulator, PleD family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 333

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 11/167 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L   D L+GL N   F   L            +LS++  D+DYFK  NDNFGH  GD
Sbjct: 164 LQRLMNSDGLTGLSNRRHFDEYLELEWRRAMRDQSQLSLLMIDVDYFKAYNDNFGHLEGD 223

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  ++  +      P     R GGEEFA    G+S   A ++A  LR+ +   +I + 
Sbjct: 224 EALRKVATAIREACSRPSDLPARYGGEEFALVLPGTSPGGARLMAEKLRQGVVALKIPHT 283

Query: 211 SSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
           +     ++T+S G++    ++      +I  AD+ LY+AK +GRNRV
Sbjct: 284 TPDGGENLTVSIGVSTFIPQQGSDCRQLISAADKGLYLAKHNGRNRV 330


>gi|326943146|gb|AEA19042.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 675

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 236 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 295

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD ++  ++ +L     +   V R GG+EF         +++AI   +    I N
Sbjct: 296 LGHDVGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 355

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I  G  + IT S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 356 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 409


>gi|260576800|ref|ZP_05844784.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sp. SW2]
 gi|259020943|gb|EEW24255.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sp. SW2]
          Length = 906

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 10/161 (6%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GL N   F       I    S   +L +VF DID FKQIND +GH  GDK++  LS
Sbjct: 482 DQMTGLPNRELFREYLEAAIRLANSNTIELMLVFMDIDNFKQINDTYGHFNGDKLLLELS 541

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            ++     T   + R+GG+EF       S + AA + + L + +E     +  G  +++T
Sbjct: 542 HRIASHQNTSDTMARIGGDEFTFLHQLQSGESAAEVLDPLVQELERP--FLIDGGQVYLT 599

Query: 220 ISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +S G++  R        ++  AD A+Y AK +GRN+ V FS
Sbjct: 600 VSFGVSIFRRDANDADEMLRNADLAMYQAKGNGRNQHVVFS 640


>gi|226357225|ref|YP_002786965.1| diguanylate-cyclase [Deinococcus deserti VCD115]
 gi|226319215|gb|ACO47211.1| putative diguanylate-cyclase [Deinococcus deserti VCD115]
          Length = 805

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 9/160 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GL N + F +    +   LS     ++F D+D FKQ+ND  GH VGD+++  +  +
Sbjct: 369 DALTGLHNRAHFQAEAERHLADLSGGELGMLFIDLDRFKQVNDTLGHDVGDELLDQVGQR 428

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220
           L  V  T   V RLGG+EF     G   ++A+      RK++ + +Q     G  +HIT 
Sbjct: 429 LRNVVRTGDLVARLGGDEFTLLLPGL--RDASDAERVARKVLASLAQPFQVGGHKLHITG 486

Query: 221 SAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           S G+A        I+T+   AD A+Y AK  G+N V  +S
Sbjct: 487 SIGVAVAPQDGMDITTMQKHADVAMYRAKHDGKNAVRTYS 526


>gi|163731983|ref|ZP_02139429.1| GGDEF/EAL domain protein [Roseobacter litoralis Och 149]
 gi|161394281|gb|EDQ18604.1| GGDEF/EAL domain protein [Roseobacter litoralis Och 149]
          Length = 681

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 86/181 (47%), Gaps = 17/181 (9%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-GSYNEKLS------IVFFDIDYFKQIND 144
           EL  +   + + +  D L+GL N  A    + GS N          I+  D+D FKQ+ND
Sbjct: 236 ELVAARQALMRAANHDALTGLFNRRAVYEHMSGSGNSAQGGDFTRCILKLDLDLFKQVND 295

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILANDL 199
           + GH  GD+V+  ++  L  +     FVGR+GG+EF         L   +  A  +   +
Sbjct: 296 SLGHDAGDRVLVRVAKILQELTRPGDFVGRIGGDEFVILIDNPRDLKMIQDLAQRIVTAV 355

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            K IE  +I    G SI  TI+A         P   ++  AD ALY AK+ GR++V  +S
Sbjct: 356 GKPIELDRIQTKIGASIGFTIAAS----SDATP-DQLLIEADLALYEAKRGGRSQVCAYS 410

Query: 260 D 260
           +
Sbjct: 411 N 411


>gi|149911202|ref|ZP_01899826.1| hypothetical protein PE36_10013 [Moritella sp. PE36]
 gi|149805729|gb|EDM65727.1| hypothetical protein PE36_10013 [Moritella sp. PE36]
          Length = 661

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 96/208 (46%), Gaps = 25/208 (12%)

Query: 72  VIISITISLLLGYISGSILKE----------LFISYNRISQLSRIDCLSGLLNHSAFISS 121
           VI+ +T  +LLG   G ++K+          L  S   + +LS  D L+GL N   F   
Sbjct: 455 VILGVTFCVLLGL--GYVIKKNLDIENQNKLLQCSNTDLVELSTRDALTGLYNRRHFDHF 512

Query: 122 LGS--------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           L           N   +I   D+D+FK INDN GH VGD V+  ++ + +    +   V 
Sbjct: 513 LQRLKQDSSFYQNSNFTIAIMDLDHFKMINDNHGHDVGDLVLIEVAKRFLHHLPSSGLVI 572

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEF       S   +      +   I++  +  ++G  I +T+S G         +
Sbjct: 573 RWGGEEFICLIEDQSHMTSLQQLEKVWSAIKDVPVATTAG-DIEVTLSIGAVTDISVAEL 631

Query: 234 ----STIIYRADQALYVAKKSGRNRVVC 257
               + ++ RAD+ LY AK+SGRN+++ 
Sbjct: 632 MITHADLLKRADERLYKAKQSGRNQIIA 659


>gi|197117893|ref|YP_002138320.1| response receiver sensor diguanylate cyclase/phosphodiesterase
           [Geobacter bemidjiensis Bem]
 gi|197087253|gb|ACH38524.1| response receiver sensor diguanylate cyclase/phosphodiesterase, PAS
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 704

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 97/194 (50%), Gaps = 29/194 (14%)

Query: 85  ISGSI--LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFD 135
           ++G+I  + E   +  +I  L+  D L+GL N   F+  L         Y+  L+++F D
Sbjct: 245 LTGTIQDITERKRAEEQIRLLAYYDALTGLPNRRFFLQQLEQALVFANRYDRMLAVLFLD 304

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLV--VVFG----------TPMFVGRLGGEEFAAA 183
           +D FK +ND  GH VGD+++  ++D+L+  V  G           P  V RLGG+EF   
Sbjct: 305 LDRFKLVNDTLGHGVGDRLLQDVADRLLRCVRRGDCLARADEECPPSLVSRLGGDEF-TI 363

Query: 184 ALGSSE--QEAAILANDLRKIIENSQINIS-SGPSIHITISAGIA-ERCHKEPISTIIYR 239
            L   E  Q+ A +A   R+I+E   +  S  G  + ++ S GI+         S +I  
Sbjct: 364 MLSDIEHFQDVAKIA---RRILEAVSVPYSLEGQEVFVSTSIGISLYPFDATTASDLIRN 420

Query: 240 ADQALYVAKKSGRN 253
           AD A+Y AK+ GRN
Sbjct: 421 ADGAMYQAKEQGRN 434


>gi|189425756|ref|YP_001952933.1| diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ]
 gi|189422015|gb|ACD96413.1| diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ]
          Length = 324

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 8/166 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           + +  + +L+ +D L+   N         A +     Y   + ++F DID+FK  ND +G
Sbjct: 140 LEFEELQRLALLDPLTETANRRYLEMKLQADLDKFQRYGIGVGVIFADIDHFKAFNDTYG 199

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD ++  ++  L     +    GR GGEEF      +     A LA  LR+++E+  
Sbjct: 200 HGLGDDILRVVARTLQGNVRSSDLAGRWGGEEFLIVVPHADAARLARLAEKLRRLVESCF 259

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           + +     +  TIS G A     + +  ++ RADQ LY AK++GRN
Sbjct: 260 V-MHQEQRVTTTISMGTAVAHQGDTLEGLLERADQMLYKAKRAGRN 304


>gi|168700395|ref|ZP_02732672.1| diguanylate cyclase [Gemmata obscuriglobus UQM 2246]
          Length = 360

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 10/166 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +++  D L+GL N  A        I   G     L++V+ D D+F ++N  F    GD
Sbjct: 178 LEKMAATDPLTGLANRRAIDEAARKEIQRRGRMPGPLAVVWIDADHFGRVNKEFSQIAGD 237

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+ +L+  L     T   +GR+GGEEF   A G+    A  LA  LR  ++ +   +  
Sbjct: 238 QVLVWLAGVLQASIRTTDSLGRVGGEEFLVLAPGTDLVGAEALAERLRVHVQAAH-TVYD 296

Query: 213 GPSIHITISAGIAERCHKEPISTIIYR--ADQALYVAKKSGRNRVV 256
           G  I +TIS G+A      P++    R  + +AL  AK  GRNR V
Sbjct: 297 GQLIRMTISLGVAVAEAGVPVTYEQLRDVSARALKEAKSDGRNRAV 342


>gi|296156949|ref|ZP_06839786.1| diguanylate cyclase [Burkholderia sp. Ch1-1]
 gi|295892835|gb|EFG72616.1| diguanylate cyclase [Burkholderia sp. Ch1-1]
          Length = 524

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 93/194 (47%), Gaps = 18/194 (9%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------ 125
           V+IS  +SL         L++   +   + +L+  D L+GL N     + L         
Sbjct: 323 VVISWLLSL--------ALRDKLRAQAALVRLAATDPLTGLGNRRVLDTRLDEEWRRARR 374

Query: 126 -NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAA 183
             + LS +F DID+FKQ ND  GH  GD+ +  +++ +   V      V R GGEEFA  
Sbjct: 375 SGQPLSALFIDIDHFKQFNDAHGHASGDEALVAVAECISAAVRRWVDVVARYGGEEFAVI 434

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRAD 241
              +S + A  +A  +R+ ++   +  S G S  +T+S G A            ++  AD
Sbjct: 435 LPDTSAEGALKVAEKIRRKVQGQDVIHSGGESATVTVSVGCATCVPAGGANALDLLAAAD 494

Query: 242 QALYVAKKSGRNRV 255
           + LYVAK +GRNRV
Sbjct: 495 RQLYVAKAAGRNRV 508


>gi|299135305|ref|ZP_07028496.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Afipia sp. 1NLS2]
 gi|298590282|gb|EFI50486.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Afipia sp. 1NLS2]
          Length = 830

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 19/166 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           RI+ ++  D L+GL N   F   L        GS +E++ ++  D+D FK +ND+FGHPV
Sbjct: 390 RIAYMAHHDNLTGLPNRVKFREHLDQALERSDGS-DERIGVLCIDLDMFKNVNDSFGHPV 448

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-----EQEAAILANDLRKIIEN 205
           GD+++  ++++L  V      V RLGG+EFA     +         +AIL  D+      
Sbjct: 449 GDRLLKMVAERLHAVIPADSLVARLGGDEFAMIVKRNPMPRDLNDLSAILIADVSAPYAV 508

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
             + +  G S+ I +S G            ++  AD ALY AK  G
Sbjct: 509 DGLELVIGASVGIAMSPGDGVTG-----DDLLRNADMALYRAKSEG 549


>gi|294142351|ref|YP_003558329.1| GGDEF domain-containing protein [Shewanella violacea DSS12]
 gi|293328820|dbj|BAJ03551.1| GGDEF domain protein [Shewanella violacea DSS12]
          Length = 371

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 11/175 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           K+  + Y R  Q++ ID L+ + N   F       I +       LS++  D+DYFK++N
Sbjct: 197 KQHLLKYFR--QVALIDGLTNISNRRHFDEVLSQEIRAAERNKHPLSVILIDVDYFKKLN 254

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D+ GH VGD+ +  L+  L+ +   P     R GGEEF      +    + ++A  L+  
Sbjct: 255 DSLGHQVGDECLIELAKVLMSIANRPRDLAARYGGEEFVILLPDTDLNGSQLIAGKLKLA 314

Query: 203 IENSQ-INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  ++ I+  S  S  +T+S G+           ++  AD+ LY AK +GR+R +
Sbjct: 315 LSEARLIHPDSAVSDLVTVSQGVCLWQQGMRPEDLMGCADKLLYQAKSTGRDRFI 369


>gi|288923375|ref|ZP_06417504.1| diguanylate cyclase [Frankia sp. EUN1f]
 gi|288345265|gb|EFC79665.1| diguanylate cyclase [Frankia sp. EUN1f]
          Length = 568

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 12/159 (7%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N + F       ++    + + ++++F D+D FK +ND  GHP GD+++   +
Sbjct: 393 DPLTGLANRALFNDRLQQAVTRHDRHGDPIAVLFCDLDDFKDVNDTLGHPAGDELLRATA 452

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +L         V RLGG+EF  A L     + A   + +   I      + +  +I  +
Sbjct: 453 RRLTSSVRAADTVARLGGDEF--AVLLEGPHDPAATGHRIAATIRGPCPLVGTTRTIQAS 510

Query: 220 ISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
           I   + E     P++  T+++ ADQA+Y AK+ G+ ++V
Sbjct: 511 IGMVVVEPA-VGPLTAETLLHHADQAMYTAKRRGKGQMV 548


>gi|260887571|ref|ZP_05898834.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Selenomonas sputigena ATCC 35185]
 gi|330837944|ref|YP_004412524.1| diguanylate cyclase with extracellular sensor [Selenomonas
           sputigena ATCC 35185]
 gi|260862746|gb|EEX77246.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Selenomonas sputigena ATCC 35185]
 gi|329745708|gb|AEB99064.1| diguanylate cyclase with extracellular sensor [Selenomonas
           sputigena ATCC 35185]
          Length = 737

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFF--DIDYFKQIN 143
           K+L  + +   Q + ID L+GLLN  A  S+      G+  E     FF  D+D+FK++N
Sbjct: 550 KKLMRARDIYKQEAEIDPLTGLLNKKAIQSACEEMLGGTLKEGAVHAFFVMDLDHFKEMN 609

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD V+   + ++  +F     +GR GG+EF    L  +      + +  R+++
Sbjct: 610 DTYGHQAGDDVLRRFAQEVRSIFRQSDHIGRFGGDEF--TVLMPNVTTLVAVEHHARRLM 667

Query: 204 ENSQ-INISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
             +Q + +    S+ +++S GIA    H      +   AD ALY  K++GRN
Sbjct: 668 TAAQELEVRDDRSL-LSVSIGIALAPLHGTNYDDLFMAADAALYDVKRAGRN 718


>gi|218246273|ref|YP_002371644.1| PAS/PAC/GAF sensor-containing diguanylate cyclase [Cyanothece sp.
           PCC 8801]
 gi|218166751|gb|ACK65488.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp.
           PCC 8801]
          Length = 625

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 90/180 (50%), Gaps = 13/180 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
            + +EL ++   + QL+ +D L+ + N   F          L    + LS++  D+D+FK
Sbjct: 443 QLYRELRLANEELEQLAFVDSLTEVANRRRFDEYLQQEWRRLTRAKQPLSLIVCDVDFFK 502

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GHP GD  +  ++  L      P   V R GGEEFA     +    A  +A ++
Sbjct: 503 FYNDTYGHPAGDNCLQQVAQVLQQSVKRPADLVARHGGEEFAIVLPNTDISGAVHIAGEI 562

Query: 200 RKIIENSQI-NISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRV 255
           R  +   ++ + +S  S ++T+S GIA   +  P   + +++  AD ALY AK  GR+R+
Sbjct: 563 RSRLRGLKLEHRASLVSDYVTLSFGIAT-TYPTPQTVVESLLMEADLALYQAKGQGRDRI 621


>gi|170750741|ref|YP_001757001.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
 gi|170657263|gb|ACB26318.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
          Length = 829

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 81/171 (47%), Gaps = 15/171 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI+ ++  D L+GL N   F   LG          E+  ++  D+D FK +ND  GHPVG
Sbjct: 393 RIAHMAHHDALTGLPNRVLFRDRLGEAIARHARDGEEAVLLCLDLDKFKIVNDTLGHPVG 452

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL--RKIIENSQIN 209
           D ++   ++++         V RLGG+EFA    G    +   LA+ L  R I E  +  
Sbjct: 453 DALLREAAERIAGCLRKDDLVARLGGDEFAILVRG---MDLPALADGLIARVIAELGRPF 509

Query: 210 ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              G   HI  S G+A   R   +P  T++  AD ALY AK  G +   CF
Sbjct: 510 RLEGQDCHIGTSIGVACLPRDGTDP-ETLMKNADLALYRAKAEGGSTFRCF 559


>gi|91793185|ref|YP_562836.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91715187|gb|ABE55113.1| GGDEF domain [Shewanella denitrificans OS217]
          Length = 344

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 17/169 (10%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFF-DIDYFKQINDNFGHPVGDKVIAFL 158
           D L+ L N +AF  +L             L I++  D+D FK +ND  GHPVGD+V+  L
Sbjct: 181 DTLTKLYNRAAFDDNLADAMARAKRNTSNLVIMYLIDLDGFKTVNDTHGHPVGDRVLKVL 240

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN----DLRKIIENSQINISSGP 214
           + +L+        V RLGG+EFA    G+ + + + LA      +++ I+  ++ +S G 
Sbjct: 241 AKRLLNAQRQGEMVCRLGGDEFAILIEGTGDTQVSPLAERILLSIKQPIDVEELQLSIGC 300

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           SI I+I   +A    +     +  ++D+A+Y  K +G+N    + +  N
Sbjct: 301 SIGISIYPSLAANSDE-----LFSQSDKAMYTIKNTGKNGFCLYKNQPN 344


>gi|54294243|ref|YP_126658.1| hypothetical protein lpl1308 [Legionella pneumophila str. Lens]
 gi|53754075|emb|CAH15548.1| hypothetical protein lpl1308 [Legionella pneumophila str. Lens]
          Length = 792

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 12/164 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R++  +  D L+GL N +A    L          N  LS++F DID FK IND+ GH  G
Sbjct: 352 RLAYQANHDSLTGLPNRTALYDRLDHAINYCKRLNTSLSVLFLDIDNFKLINDSLGHDAG 411

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++   S +L         V R GG+EF    + +  ++  ++A ++ K +    I + 
Sbjct: 412 DILLYEFSRRLKGCIRHSDTVARFGGDEFVLLLMTTEPKDVILVAQNILKAVAQP-IKLP 470

Query: 212 SGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRN 253
           +   I +T S GI+    K+ I  ST++  +D A+Y+AKK GRN
Sbjct: 471 TQEVI-VTTSIGIS-LFPKDGIDASTLLKNSDTAMYLAKKEGRN 512


>gi|328887571|emb|CAJ67540.2| putative diguanylate kinase signaling protein [Clostridium
           difficile]
          Length = 832

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 13/165 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPV 150
           NR+   ++ D L+ + N +A+I  L + N       +  +++  DIDYFK IND +GH +
Sbjct: 669 NRLLDKAQRDSLTNIYN-AAYIRKLTAQNLLNLSTEKNGALLIIDIDYFKSINDTYGHLL 727

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQIN 209
           GDKV+  ++  L   F     VGRLGG+EF+        +E  I   ND+   I    I 
Sbjct: 728 GDKVLIDVAKVLDESFAKNDIVGRLGGDEFSVYINDIINKEELINKCNDVYNHIH--LIK 785

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + +G S+ I++   IA+   +     +   AD ALY +K+ GRNR
Sbjct: 786 LPNGESLSISMGVVIAKPGQE--YDELYQIADNALYDSKRQGRNR 828


>gi|330830774|ref|YP_004393726.1| GGDEF domain-containing protein [Aeromonas veronii B565]
 gi|328805910|gb|AEB51109.1| GGDEF domain protein [Aeromonas veronii B565]
          Length = 538

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 74/164 (45%), Gaps = 20/164 (12%)

Query: 106 IDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+ + N +A    L         Y   L +   DID+FK INDN+GH  GDK +  +
Sbjct: 380 LDSLTQVHNRAALDERLEQEYKRWLRYRTPLCMAIIDIDHFKNINDNYGHMAGDKALKVV 439

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP---- 214
           +  L        F+ R GGEEF             I  +  +K +E  +  I S P    
Sbjct: 440 AKALQSALRDTDFIARFGGEEFVVLL-------PNINPDKFQKPLETLRQTIKSIPFRFR 492

Query: 215 --SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              + ITIS G       +  S +  RAD+ALY +K +GR++V 
Sbjct: 493 DAKVEITISIGATLFKDGDNPSDVFERADKALYHSKHTGRDQVT 536


>gi|312135310|ref|YP_004002648.1| diguanylate cyclase [Caldicellulosiruptor owensensis OL]
 gi|311775361|gb|ADQ04848.1| diguanylate cyclase [Caldicellulosiruptor owensensis OL]
          Length = 557

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 80/171 (46%), Gaps = 12/171 (7%)

Query: 97  YNRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           Y ++  ++ +D L+G  N             +S G Y   +SI  FD+D FK++ND +GH
Sbjct: 382 YQQMRSMAMVDGLTGAFNRIYLYEFLEKEVQTSGGRY--PISIALFDVDNFKKLNDTYGH 439

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GDKV+  +             V R GGEEF          EA  +   +R+ IE+  I
Sbjct: 440 LFGDKVLQTIVRIAREKVRKGDIVARYGGEEFIIVFSHLESSEAYKVVERIRRAIESETI 499

Query: 209 NISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +     +T+S GIA    H + +  ++  AD A+Y AK SG+N  V +
Sbjct: 500 E-DNLVQTRVTVSFGIASYPSHADNVKDLVKCADIAMYRAKSSGKNCTVIY 549


>gi|284992145|ref|YP_003410699.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Geodermatophilus obscurus DSM 43160]
 gi|284065390|gb|ADB76328.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geodermatophilus obscurus DSM 43160]
          Length = 718

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 15/164 (9%)

Query: 107 DCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N   F++ L       S   +  + + D+D FK +ND  GH VGD+++  ++ 
Sbjct: 292 DALTGLPNRRTFLAHLDAVFDQASPGARAGLCYLDLDGFKAVNDTLGHEVGDQLLVAVAQ 351

Query: 161 QLV-VVFGTPMFVGRLGGEEFAAAALGS--SEQEAAILANDLRKIIENSQINISSGPSIH 217
           +LV VV    + V RLGG+EF     G+  S Q  A+    L  + +  ++    G  + 
Sbjct: 352 RLVSVVRDRGLSVARLGGDEFVVLVPGTSGSGQLVALAEEVLAAVAQPVELG---GRRVE 408

Query: 218 ITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           IT S G+ ER     +P + ++  AD  LY AK  GR++   F 
Sbjct: 409 ITASVGVVERSIADIDP-AELLRAADMTLYWAKADGRSQWALFE 451


>gi|326317056|ref|YP_004234728.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373892|gb|ADX46161.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 347

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 89/216 (41%), Gaps = 34/216 (15%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLG------- 123
           I +T S         +++ +F  Y     L   S  D L+GL N   F            
Sbjct: 120 IEVTQSRPFSAHKLDVIQSVFFVYQNYQSLLDYSERDALTGLFNRKTFDEQFARRAGMSS 179

Query: 124 ---------------SYNEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
                             E L   +   DID+FKQ+ND FGH  GD+V+  +++ L   F
Sbjct: 180 NAATEVSAEPDDASQPRGEPLQHWLAVVDIDHFKQVNDRFGHLYGDEVLILIANILRNSF 239

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIA 225
                + R GGEEF      ++   A    N  R  ++         P +  +T+S G A
Sbjct: 240 RGHDRIFRFGGEEFVVLLRSTTLATAHKAFNRFRTAVQEYDF-----PQVGRVTVSLGFA 294

Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                 P+  I+ +ADQALY AK+ GRNRV  + D+
Sbjct: 295 STERGAPVE-ILGQADQALYYAKEHGRNRVCYYDDL 329


>gi|229529374|ref|ZP_04418764.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229333148|gb|EEN98634.1| GGDEF family protein [Vibrio cholerae 12129(1)]
          Length = 429

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 8/132 (6%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+IND +GH  GD+++  ++  L         + R GGEEF       S +EA  
Sbjct: 299 DIDHFKKINDQYGHITGDRILQAVASCLRKNVRDGDTIIRFGGEEFLLLFQAHSNKEAWY 358

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + + LR+ +++      +  SI  T   G         +   I RAD ALY AK++GRN+
Sbjct: 359 MLDRLRQRVKDDHSLYGTTISIGFTFIDG--------SLPAAISRADTALYQAKEAGRNQ 410

Query: 255 VVCFSDIENNTC 266
           VV  S+ EN++ 
Sbjct: 411 VVADSEKENDSA 422


>gi|284993380|ref|YP_003411935.1| diguanylate cyclase with PAS/PAC sensor [Geodermatophilus obscurus
           DSM 43160]
 gi|284066626|gb|ADB77564.1| diguanylate cyclase with PAS/PAC sensor [Geodermatophilus obscurus
           DSM 43160]
          Length = 296

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 77/162 (47%), Gaps = 20/162 (12%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N + F   L    E+        S++  D+D FK IND  GHPVGD V+   +
Sbjct: 140 DPLTGLPNRALFTDRLQHALERGRRERTPTSLLGVDLDSFKTINDVHGHPVGDAVLIAFA 199

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           ++L  V        R+GG+EF+     S   +A  LA  LR  + N  + ++ G +I ++
Sbjct: 200 ERLTSVLRASDTAARVGGDEFSIVCENSGRADAEALATRLRDRV-NEPLQLAGGLTIPLS 258

Query: 220 ISAGIA--------ERCHKEPISTIIYRADQALYVAKKSGRN 253
           IS GI         ER        ++  AD A+YV K + R 
Sbjct: 259 ISIGIGTVEGGIDPERA----FGGLVREADDAMYVDKAARRG 296


>gi|254254083|ref|ZP_04947400.1| hypothetical protein BDAG_03372 [Burkholderia dolosa AUO158]
 gi|124898728|gb|EAY70571.1| hypothetical protein BDAG_03372 [Burkholderia dolosa AUO158]
          Length = 520

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 15/165 (9%)

Query: 100 ISQLSRIDCLSGLLN----HSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVG 151
           I  L+R D L+GL N    H+     L     +    L++++ D+D FK IND FGH  G
Sbjct: 342 IRHLARHDALTGLPNRHELHAQLKRMLARGQRQPGLALAVMYLDLDGFKPINDRFGHHAG 401

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQIN 209
           D+V+  ++ +L           R+GG+EF  A   ++    + LA    +IIE  ++   
Sbjct: 402 DEVLMQVAQRLGGTLPHGELAARVGGDEFIVAIEDTTMPACSTLAA---RIIERISAPYT 458

Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
           +S G ++   IS GIA +  H  P   +I +AD ALY AK +G+ 
Sbjct: 459 LSIGETVSFGISIGIALDDGHGSP-DELIRQADSALYDAKSAGKG 502


>gi|89896130|ref|YP_519617.1| hypothetical protein DSY3384 [Desulfitobacterium hafniense Y51]
 gi|89335578|dbj|BAE85173.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 265

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 79/174 (45%), Gaps = 26/174 (14%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GL N           +       ++ S+   DID FK IND +GH  GDKVI  ++
Sbjct: 92  DSMTGLPNKGFMYLRLNIDMEKYAKQEKEYSLAMIDIDRFKNINDTYGHLAGDKVIKEVA 151

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--- 216
             L         V R GGEEFA     +SE+ AA L   +R ++EN       GP I   
Sbjct: 152 GILRKNVRASDEVIRWGGEEFAILLPETSEEGAANLIERIRNLMENHDF----GPEIASQ 207

Query: 217 HITISAGIAERCHKEPIST-----------IIYRADQALYVAKKSGRNRVVCFS 259
            +T SAG+      E +             I+  +DQALY AKK+ RN V  FS
Sbjct: 208 KVTFSAGVVSYKKLEEVKARENRLTNNTDLIVNFSDQALYQAKKT-RNTVWRFS 260


>gi|332993899|gb|AEF03954.1| diguanylate cyclase/phosphodiesterase [Alteromonas sp. SN2]
          Length = 701

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 102/208 (49%), Gaps = 22/208 (10%)

Query: 65  LVENLSLVIISITISLLLGYISGSIL---KELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           L EN++L++  I + LL+ +     L   +E  I      +L+  D L+GL N    + +
Sbjct: 231 LGENINLLLEMIEVELLINHEQTQTLVNQQETMI------RLANYDSLTGLPNRQFVLDN 284

Query: 122 LG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L          ++ L+++FFD+D FK IND+ GH  GD ++  ++D++  +      V R
Sbjct: 285 LRLELARARRNDDDLALLFFDLDGFKGINDSLGHETGDLILIEVADRVSALLREGDLVAR 344

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQINISSGPSIHITISAGIAERCHKE- 231
           LGG+EF    L   E     L N   ++I+   S   +  G S+ + +S G+A     + 
Sbjct: 345 LGGDEF--LVLPDRETGDTTLENMAIRLIDAFTSPFEL-RGLSLSVGVSVGVARAIDADY 401

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
            +S ++  AD A+Y +K  GR     F+
Sbjct: 402 DLSELMSNADLAMYRSKAKGRGSFTIFT 429


>gi|332297272|ref|YP_004439194.1| diguanylate cyclase [Treponema brennaborense DSM 12168]
 gi|332180375|gb|AEE16063.1| diguanylate cyclase [Treponema brennaborense DSM 12168]
          Length = 333

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 10/170 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +LS  D L+G+ N   F             +   +S++  DIDYFK  ND +GHP GD
Sbjct: 158 LQRLSCTDVLTGIANRRGFERLAPDLWKEAVVHGRLMSLIMVDIDYFKDFNDTYGHPEGD 217

Query: 153 KVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           K++  ++ ++  V  +   +  R GGEEF          E    A  +R+ +E  +I  +
Sbjct: 218 KILKTVAKKITNVVDSGKSISCRYGGEEFLIMMFSDDFNEILHAAERIRQSVEYLRIKGA 277

Query: 212 SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFS 259
                 IT+S G+     +  ++  T +  AD ALY AKK+GRN V  F+
Sbjct: 278 HPGHELITVSVGLFVTNARAELNWETCVSYADLALYEAKKNGRNCVRLFT 327


>gi|326388893|ref|ZP_08210475.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206493|gb|EGD57328.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 769

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 15/183 (8%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---------GSYNEKLSIVFFDIDYF 139
           + +EL +S  +    +  D +SGL N   ++  L         G     + + + D+D F
Sbjct: 316 VTRELLVSEAQARHNALHDGMSGLPNRMYYMQRLHEELARHLAGEVRGDVFVAYLDLDGF 375

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILAN 197
           K +ND  GH VGD+++  ++ +L  V     F+ R GG+EF     A G   Q A     
Sbjct: 376 KGVNDALGHHVGDELVRQVAMRLRHVLPAGDFIARFGGDEFVLMRCAEGGRAQ-ADAFGQ 434

Query: 198 DLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           D+  ++    + +  G +I +T S GI+    H E    ++ RAD ALY AK+ GR R  
Sbjct: 435 DVMTLMREPFLVV--GHTIEVTCSCGISWGPSHSEDPGELLRRADIALYRAKQLGRARYR 492

Query: 257 CFS 259
            F+
Sbjct: 493 RFT 495


>gi|323487913|ref|ZP_08093171.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis
           MPA1U2]
 gi|323398647|gb|EGA91435.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis
           MPA1U2]
          Length = 760

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 90/172 (52%), Gaps = 11/172 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFI----SSLGSYNE---KLSIVFFDIDYFKQINDNFGHPV 150
           +++  ++  D L+GL N   F+    SS+ + +E   KL++VF D+D FK IND FGH  
Sbjct: 322 HQVEHIAYHDELTGLPNRRLFLKNLESSIATADESGKKLAVVFIDLDRFKNINDTFGHEF 381

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD ++   S ++     +   + R GG+EF    L + + EA I    + +I    Q  +
Sbjct: 382 GDLLLQDFSRKISENLRSVDTISRQGGDEF-TLILNNIQDEADITPT-IHRIQAAFQHAL 439

Query: 211 S-SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           S     +H+++S GIA    + +  S ++  AD A+Y AK  G+N    FSD
Sbjct: 440 SIKDQELHVSMSIGIAIYPDNGKSTSELLKHADSAMYSAKAKGKNNYQFFSD 491


>gi|254490103|ref|ZP_05103295.1| GGDEF domain protein [Methylophaga thiooxidans DMS010]
 gi|224464691|gb|EEF80948.1| GGDEF domain protein [Methylophaga thiooxydans DMS010]
          Length = 344

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 72/130 (55%), Gaps = 7/130 (5%)

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            DID+FK IND++GH  GD+VI  ++  +          V R GGEEF       +E++A
Sbjct: 200 LDIDHFKVINDSYGHLYGDEVIILVARLMSSGCIRDDDLVYRYGGEEFVVLLKAPNEEDA 259

Query: 193 AILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A   N +R++I   +      P +  +T S G  E   ++  S +I +AD+ALY AK++G
Sbjct: 260 AHTFNRIREMISEHEF-----PQLKQVTTSIGFVEVLGQQSPSDVIGQADEALYYAKQNG 314

Query: 252 RNRVVCFSDI 261
           RN+V  + ++
Sbjct: 315 RNQVQSYREL 324


>gi|209967162|ref|YP_002300077.1| diguanylate cyclase, putative [Rhodospirillum centenum SW]
 gi|209960628|gb|ACJ01265.1| diguanylate cyclase, putative [Rhodospirillum centenum SW]
          Length = 594

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 10/166 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q +  D L+G+ N   F        +    Y    S++  DID+FKQ ND  GH +GD
Sbjct: 426 LEQAALNDPLTGVWNRRRFEQALEEAAARALRYGRPFSLLLIDIDHFKQFNDTHGHALGD 485

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---N 209
           + +  ++  L         + R GGEEF+     +    A  LA+DLR+ +    I    
Sbjct: 486 RALQMVAGVLAGRSRQVDCLARWGGEEFSLLLPETDAVSAQALASDLRRAVAALSIADVG 545

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                   +T+S G+ +    E I  +  R D ALY AK +GRN+V
Sbjct: 546 PGDVGPGGVTVSIGVGQATPGESIDALFRRVDAALYRAKAAGRNQV 591


>gi|167580272|ref|ZP_02373146.1| EAL/GGDEF domain protein [Burkholderia thailandensis TXDOH]
          Length = 772

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 100/204 (49%), Gaps = 16/204 (7%)

Query: 62  EYILVENLSLVIIS-ITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +Y    N+ L++ S IT+++L   G  +G I K L      ++QL+  D L+GL N  A 
Sbjct: 278 DYHHTRNVYLLMTSFITLAMLAFFGVATGLIGK-LLGREREMTQLAEFDLLTGLANRYAT 336

Query: 119 ISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           + SL       S   +L+I+F D+D FK +ND  GH  GD V+   + +L         +
Sbjct: 337 LRSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVTNEGAL 396

Query: 173 GRLGGEEFAAAALGSS-EQEAAILANDL-RKIIENSQINISSGPSIHITISAGIA-ERCH 229
            R+GG+EF     G + E+ A  LA  + R   E   +    G S  +  S GIA     
Sbjct: 397 ARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPFDVR---GSSFVLHASIGIALHSVE 453

Query: 230 KEPISTIIYRADQALYVAKKSGRN 253
            E    ++ +AD A+Y AK +G+N
Sbjct: 454 NESEIDLLKKADLAMYSAKDAGKN 477


>gi|116052366|ref|YP_792677.1| hypothetical protein PA14_56280 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296391036|ref|ZP_06880511.1| hypothetical protein PaerPAb_22909 [Pseudomonas aeruginosa PAb1]
 gi|313106857|ref|ZP_07793066.1| hypothetical protein PA39016_000780025 [Pseudomonas aeruginosa
           39016]
 gi|115587587|gb|ABJ13602.1| hypothetical protein PA14_56280 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310879568|gb|EFQ38162.1| hypothetical protein PA39016_000780025 [Pseudomonas aeruginosa
           39016]
          Length = 375

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 119/281 (42%), Gaps = 42/281 (14%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYF--SIFFSIF-IATVIFIANIFLFYIGLTPFYGLEYI 64
           +L+ +L H  +L      TFM+++  ++ F +F +   +F     L +I  +  Y +E +
Sbjct: 93  WLTYFLYHVDSLRG----TFMVFYVLALLFGVFQLPPRVFARCAALAFIAFSGIYLVEAL 148

Query: 65  ----------LVENLSLVIISITISLLLGYISGSILKELFISY-------------NRIS 101
                      ++ L + I+ + +SL   YI     +     Y              ++ 
Sbjct: 149 QQRLELPGRAALQVLVMFIVMVWLSLFASYIQAMRQRMRQRRYALQAHQDTLRGMMRQLE 208

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            L   D L+GL N   F+  L S        N +  +   D+D+FK+IND  GH  GD+V
Sbjct: 209 DLVATDELTGLFNRRHFMR-LASRALEDLLPNRQHGLALIDLDHFKRINDRHGHAAGDRV 267

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   +            + R GGEEF      +  ++       LR   E ++     G 
Sbjct: 268 LQTFAAVARSCLRDGDVLARYGGEEFVLLLPHADAEQLESCCERLRLAFEQAE---PVGV 324

Query: 215 SIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           ++  +++S G+      + +   + RADQALY AK+ GRNR
Sbjct: 325 TVDTLSLSVGMTLLYADDDLDEALQRADQALYRAKRGGRNR 365


>gi|1903400|gb|AAC45065.1| response regulator protein [Aeromonas jandaei]
          Length = 415

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 13/173 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           E    +N I + +  D L+GL N   + +    + E+       LS+   D+D+FKQ+ND
Sbjct: 242 EALEQFNSIQESANRDYLTGLYNRRYWFNEGQKWFEEQQRLQSTLSLCVLDVDHFKQVND 301

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           ++GH +GD+++  L+ QL   F   M + R GGEEFA      S     +L   L  + +
Sbjct: 302 HWGHAIGDQLLCHLTRQLTQFFPDAM-IARFGGEEFALMVPHCS---VPVLLKRLEGLRQ 357

Query: 205 N-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              Q  +S    + +  S G+     +  +   +  AD+ LY AK +GR+++V
Sbjct: 358 QLRQHPLSPDVPLFVRASYGVVS-VGRVSMDEALSEADRLLYQAKNTGRDKIV 409


>gi|117929112|ref|YP_873663.1| diguanylate cyclase/phosphodiesterase [Acidothermus cellulolyticus
           11B]
 gi|117649575|gb|ABK53677.1| diguanylate cyclase/phosphodiesterase [Acidothermus cellulolyticus
           11B]
          Length = 884

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 96/197 (48%), Gaps = 23/197 (11%)

Query: 76  ITISLLLGYISGSI--LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----- 128
           ++++L  G +  S+  L+EL     +++QL+  D L+GL N + F   L     K     
Sbjct: 413 VSVALENGRLEQSLAQLREL---EQKLTQLAFHDPLTGLANRALFSERLSQVLAKAKAEG 469

Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA----- 181
              +++F D+D FK +ND  GH  GD+++  +++++           RLGG+EFA     
Sbjct: 470 RTCAVLFIDLDDFKTVNDTLGHDAGDELLCAVAERITGCLRPSDQPARLGGDEFAVIIED 529

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
           A +  ++E+ AA +   LR  I         G  +HI  S GIA     +    ++  AD
Sbjct: 530 ALSTQAAERIAARITEQLRAPIS------VHGCELHIRASIGIATSQGVQTADELLRNAD 583

Query: 242 QALYVAKKSGRNRVVCF 258
            A+Y+AK  G+ R   F
Sbjct: 584 LAMYMAKADGKGRYRWF 600


>gi|313200780|ref|YP_004039438.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. MP688]
 gi|312440096|gb|ADQ84202.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. MP688]
          Length = 641

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 9/165 (5%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+G+ N +A        ++S  +  E+   ++ D+D FK +ND  GH VGD ++  +
Sbjct: 218 LDPLTGIHNRTALETRLQAALASAHTQGEQHMFMYLDLDQFKIVNDTCGHAVGDSLLKQI 277

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
              +     T   + RLGG+EFA   L      A  +A+D+   IE  +         H+
Sbjct: 278 VSIIRGCLSTDALLARLGGDEFAILLLCCDSDAAGKIADDICNRIEAFRF-AHEQKRFHV 336

Query: 219 TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           + S G+    H+ + IS ++  A+ A Y AK+ GRNR   + D +
Sbjct: 337 SASIGLVRIDHQWQDISALLQIANAACYTAKQEGRNRTHLYRDTD 381


>gi|237797914|ref|ZP_04586375.1| PAS:GGDEF protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|237805310|ref|ZP_04592014.1| PAS:GGDEF protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020765|gb|EGI00822.1| PAS:GGDEF protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331026417|gb|EGI06472.1| PAS:GGDEF protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 332

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 2/129 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+ +  DID FK +ND +GH  GD V+  +++            GR+GGEEFAA   G +
Sbjct: 203 LAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCA 262

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVA 247
              A  +A  L++ I+      S G +  IT S G+     ++     +Y RAD A+Y A
Sbjct: 263 PDMAMQIAERLQREIQRQNFQ-SGGVTFSITASQGLTNLGPEDQSLEALYGRADAAMYQA 321

Query: 248 KKSGRNRVV 256
           K+ G+N++V
Sbjct: 322 KRQGKNQIV 330


>gi|254490929|ref|ZP_05104111.1| hypothetical protein MDMS009_1262 [Methylophaga thiooxidans DMS010]
 gi|224463838|gb|EEF80105.1| hypothetical protein MDMS009_1262 [Methylophaga thiooxydans DMS010]
          Length = 1084

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 88/174 (50%), Gaps = 21/174 (12%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++L+ ID L+GL N + F       I      + +L++ F D+D+FK IND+ GH  GD
Sbjct: 652 LTRLASIDGLTGLPNRAVFTDRVEHAIHKSMRNSGRLAVFFLDLDHFKHINDSLGHKAGD 711

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKI-----IEN 205
            ++  ++ ++         V RLGG+EF      + S+E    +    ++ +     IEN
Sbjct: 712 ILLTEVAGRIKACVREGDTVARLGGDEFTLLLEDVRSAEYVGKVAEKVIKSMTQPYQIEN 771

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +++NIS  PSI I++            +  ++  AD A+Y AKK GRN    +S
Sbjct: 772 TEVNIS--PSIGISLYPA-----DGRDVDMLVRNADAAMYHAKKVGRNNFQFYS 818


>gi|222081327|ref|YP_002540690.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
 gi|221726006|gb|ACM29095.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
          Length = 714

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 78/159 (49%), Gaps = 14/159 (8%)

Query: 107 DCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D LSGLLN    + +L     S N  +S+   D+D FK +ND +GH VGD +I  ++  L
Sbjct: 296 DSLSGLLNRHGLLDALDHPGNSDNRSMSLYLIDLDGFKAVNDAWGHAVGDDLIRIIAKVL 355

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSS---EQEAAILANDLRKIIENSQINISSGPSIHIT 219
                  +   RLGG+EFA   +GS+   E E AIL       IE  +++   G +I   
Sbjct: 356 PTCHHEIIAAARLGGDEFALVQIGSATPEEVEKAILG----LFIEPFKLD---GRTIEAG 408

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            S G A          ++ RAD ALY AK+ G+   V +
Sbjct: 409 ASIGSAVGTSSIAPLELLRRADMALYRAKEDGKGHAVEY 447


>gi|253698909|ref|YP_003020098.1| diguanylate cyclase [Geobacter sp. M21]
 gi|251773759|gb|ACT16340.1| diguanylate cyclase [Geobacter sp. M21]
          Length = 408

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 19/166 (11%)

Query: 107 DCLSGLLNHS-------------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           D L+G  N S             A  +  G     L  +  DID FK++NDN GH  GD 
Sbjct: 246 DALTGTFNKSQIELLACKEFARCARRTEKGLAGADLGFIMIDIDRFKEVNDNHGHLAGDV 305

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++   + ++     +   +GR GGEEF     GS  ++  ++A  +  ++ + +  +  G
Sbjct: 306 LLQQFAARIARSLRSYDSIGRFGGEEFLVMLPGSDLEQTRVVARKIWSLLRD-EPYLVDG 364

Query: 214 PSIHITISAGIAERCHKEPISTIIY---RADQALYVAKKSGRNRVV 256
             +++T S G A    KE  + +++   RADQ LY AK  GR+RVV
Sbjct: 365 REMNLTASLGAA--AVKEGDADLLHVLKRADQRLYAAKSGGRDRVV 408


>gi|162149427|ref|YP_001603888.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161788004|emb|CAP57608.1| putative signalling protein, GGDEF family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 692

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 11/185 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           + E   +  RI+ L+  D L+GL N + F  +L        S  ++++++  D+D FK+I
Sbjct: 244 ITERLRAEARITYLAHHDSLTGLANRAWFTEALDRALTLAASGTQRVAVIGIDLDKFKEI 303

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH VGD+V+  L+ ++  V      V RLGG+EFAAA       E       L + 
Sbjct: 304 NDQHGHAVGDQVLVTLAARIRDVLEDDELVARLGGDEFAAAKRFDDMAELNAFIGRLEEC 363

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +  SQ     G  +    S G++      E +  ++  AD A+Y AK + R   VCF + 
Sbjct: 364 L--SQPIGVDGFELRPNASIGVSLYPRDAETVEALMGDADLAMYRAKGALREH-VCFYEA 420

Query: 262 ENNTC 266
           E +  
Sbjct: 421 EMDEA 425


>gi|576657|gb|AAA86986.1| ORF3 [Listonella anguillarum]
          Length = 206

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 13/161 (8%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+ L N   ++ +  SY E+ +      +   D+DYFK+IND +GH  GD+V+  LS 
Sbjct: 44  DPLTDLYNRR-YLDTWFSYQEETTNNKPHLLAIIDVDYFKKINDQYGHEAGDEVLRALST 102

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            L         + R GGEEF    + + E     +   +R  +E +     +G  + +T+
Sbjct: 103 ILKQQLRPEDLLMRWGGEEF-VMIISTPEAHIKEVLERIRAQVEQTSF-YWAGQRVPVTV 160

Query: 221 SAG-IAERCHKE---PISTIIYRADQALYVAKKSGRNRVVC 257
           S G IAE+   +      + +  ADQALY AK  GRNR + 
Sbjct: 161 SIGAIAEKSVSKLALSWQSAMESADQALYQAKSEGRNRFIV 201


>gi|71278229|ref|YP_271325.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71143969|gb|AAZ24442.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 1034

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)

Query: 92   ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
            +L  +  ++  L+  D L+GL N   F   L +         + LS++  DID+FK  ND
Sbjct: 856  DLIAANKQLEVLTYQDGLTGLYNRRYFDKQLTTEINRHYRQQQSLSLILCDIDHFKLFND 915

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKII 203
             +GH  GD  +  +++ +            R GGEEFA     +S + + ++A  L   I
Sbjct: 916  LYGHQQGDNCLKRVAECIGTNVARMTDANCRYGGEEFAIILPNTSVEHSTLVAERLCFAI 975

Query: 204  ENSQI-NISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            EN +I +  S  S  +T++ G+       K  +  II  AD+ALY+ KK+GRN+VV
Sbjct: 976  ENMKILHEKSKTSNFVTLTIGVVTIPPKQKTSVDAIILSADKALYMGKKNGRNKVV 1031


>gi|54301944|ref|YP_131937.1| putative response regulator protein [Photobacterium profundum SS9]
 gi|46915364|emb|CAG22137.1| putative response regulator protein [Photobacterium profundum SS9]
          Length = 406

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 77/160 (48%), Gaps = 13/160 (8%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
            L+  D L+   N   F     S N      +   DID FK+IND +GH +GD V+   +
Sbjct: 253 HLANKDYLTQTWNRRYFFDQPLSKNHSGPRCLALLDIDSFKKINDTYGHHIGDMVLIEFA 312

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSS---EQEAAILANDLRKIIENSQINISSGPSI 216
           + L   F   + V R GGEEF      S     Q    L ND    I +SQ+NI +  SI
Sbjct: 313 NTLKNYFSDAL-VARFGGEEFCILYGNSPTVFNQRLEALKND----IADSQLNILNN-SI 366

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             TISAG+        +  +I RAD+ LY AK +GRN +V
Sbjct: 367 RYTISAGVVN--ADSNVHDLISRADKCLYKAKANGRNLIV 404


>gi|238785892|ref|ZP_04629859.1| hypothetical protein yberc0001_19120 [Yersinia bercovieri ATCC
           43970]
 gi|238713213|gb|EEQ05258.1| hypothetical protein yberc0001_19120 [Yersinia bercovieri ATCC
           43970]
          Length = 467

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 84/177 (47%), Gaps = 11/177 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           + EL  S + +  LS+ D L+G+ N   F        +K       LS++  D D FK  
Sbjct: 285 ITELKQSESILKALSQTDVLTGVANRRHFDDLYQHIWQKNRIEGGTLSVLMIDFDNFKSF 344

Query: 143 NDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH +GD  +  + + L   + G    + R GGEEF      S+  +A  +A  +R 
Sbjct: 345 NDLYGHAMGDVCLKSIVETLSKSIRGGSDILARYGGEEFIVLLAPSTPADAKAIAERMRH 404

Query: 202 IIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYR--ADQALYVAKKSGRNRV 255
            IE   I     P   +TIS G+A      E I+ +     AD+ALY AK SG+NR+
Sbjct: 405 SIEELDIPHGMSPQGRVTISVGVASISAPDEHIAAMDLSDAADKALYRAKASGKNRI 461


>gi|330806852|ref|YP_004351314.1| diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327374960|gb|AEA66310.1| Putative diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 308

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 4/131 (3%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           ++ +  DID FK IND +GH  GD V+  +++    V       GR+GGEEFAA   G +
Sbjct: 179 MAFLLLDIDDFKVINDTYGHQEGDTVLQRIAESGRSVLRRGDLFGRIGGEEFAAVFPGCA 238

Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYV 246
              A  +A  L++ I+  ++   SG     IT+S G+       + + ++  RAD A+Y 
Sbjct: 239 PDMALQVAERLQREIQ--RLAFRSGERGFGITVSQGLTGITADDQSLDSLFARADAAMYE 296

Query: 247 AKKSGRNRVVC 257
           AK+ G+NR++ 
Sbjct: 297 AKRQGKNRIIA 307


>gi|294626944|ref|ZP_06705535.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292598804|gb|EFF42950.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 296

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 96/211 (45%), Gaps = 14/211 (6%)

Query: 48  IFLFYIGLTPFYGLE--YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR 105
           +FL   G  P   LE      E LSL + ++ +   L     SI   L   YNR      
Sbjct: 86  LFLSAAGPGPMPRLEIAEAAAEQLSLALSNLRLRESL--RRQSIRDALTGLYNR------ 137

Query: 106 IDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
              L   L+H   ++        LS++  D+D+FKQ ND+ GH  GD ++A + + L+  
Sbjct: 138 -RYLEESLSHE--LARCARRGLPLSVLMLDVDHFKQFNDSQGHAGGDLLLAAVGELLLTR 194

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                   R GGEEF      +  +EA  +A  +R  I    ++  +     +T S G+A
Sbjct: 195 LRAEDVACRYGGEEFTVLLPEADGEEAMRVAEQIRGYIAALAVSDGARALPKVTASIGVA 254

Query: 226 E-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
                 E  +++I +AD ALY AK +GRNRV
Sbjct: 255 SFPVDGEQGASLIQKADAALYRAKHAGRNRV 285


>gi|157376756|ref|YP_001475356.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157319130|gb|ABV38228.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 341

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 12/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           K+L + + R   L+ +D L+ L N   F       I +    +  LS++  DID+FK+ N
Sbjct: 167 KKLVLQFRR---LALVDGLTQLSNRRQFDTILEQEIRAAERNHNPLSLIMMDIDFFKRFN 223

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D+ GH  GD+ +  ++  L      P   V R GGEEF      +  Q AA +A   R  
Sbjct: 224 DSAGHSAGDECLVAVAQVLTETVKRPRDVVSRYGGEEFVIVLPSTDLQGAARVAEATRSA 283

Query: 203 IENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + +  I + +S  S  +T+S G+ +         +I  AD+ LY AK++GR++
Sbjct: 284 LMSRAIPHPASDVSPCVTMSQGVCQWQSGMSSEALIIAADELLYRAKQAGRDQ 336


>gi|146284341|ref|YP_001174494.1| GGDEF family protein [Pseudomonas stutzeri A1501]
 gi|145572546|gb|ABP81652.1| GGDEF family protein [Pseudomonas stutzeri A1501]
          Length = 400

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 109/236 (46%), Gaps = 10/236 (4%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS 86
           F +  + ++++  A +I +A++ +  + LTP    E+ +   +S  ++ + I  +  Y+ 
Sbjct: 156 FFLGVTFWWALLCAVLIVVADVLIAGLILTPEQMPEHWIA--VSYYLLLLIIGAISRYVH 213

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
               ++ F+    +  ++  D LSGL N  +        I+      + LS++  D+D F
Sbjct: 214 EYSQRDQFLMRKLLGWVAEHDALSGLANRRSHDLALRQRIAQARRDRQPLSLLLLDLDDF 273

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILAND 198
           K  ND FGHP GD +I    + +      P+    R+GGEEFA          A  +A  
Sbjct: 274 KAYNDTFGHPAGDALIRSFGELVAKFARRPLDQAARVGGEEFALLLYNCDNAAAQRIARQ 333

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           L   +   ++     P+  + +S G+A     +    + + AD ALY AK +G+NR
Sbjct: 334 LVAALAALEVRHPRDPASRVGVSIGVATLQDGQQAEQLYHNADMALYQAKTTGKNR 389


>gi|90418218|ref|ZP_01226130.1| conserved hypothetical protein with GGDEF domain [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337890|gb|EAS51541.1| conserved hypothetical protein with GGDEF domain [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 386

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 85/179 (47%), Gaps = 19/179 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL----GSYNEKL---SIVFFDIDYFKQINDNFGHPV 150
           +++  L+  D ++GL N S F + L    G+   K    +++  D+D FK IND +GH  
Sbjct: 208 DKMRYLAEYDVMTGLANRSQFQTRLADLEGTTAGKRPVGALLLIDLDGFKAINDTYGHAF 267

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD  +   + +L  V      V R+GG+EF A  LGS     A+      + +  + +++
Sbjct: 268 GDVCLKATATRLRQVCDDAELVARIGGDEF-AVLLGSHRDAVAV------ETLAATIVDL 320

Query: 211 SSGPSIHIT-----ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            +GP+   T      S GIA         T+  RAD ALY AK SGRN    FS    N
Sbjct: 321 LNGPAADGTASDLGASVGIAMAEAGMAPDTLFCRADSALYAAKASGRNAYRMFSSTMQN 379


>gi|320354615|ref|YP_004195954.1| PAS/PAC sensor-containing diguanylate cyclase and hemerythrin-like
           metal-binding domain-containing protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320123117|gb|ADW18663.1| diguanylate cyclase with PAS/PAC sensor and hemerythrin-like
           metal-binding domain protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 773

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 90/171 (52%), Gaps = 12/171 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS--YNEK-----LSIVFFDIDYFKQINDNFGHPVGD 152
           + Q++  D L+GL N +     L    +N +     ++I+F D+D FK +ND +GH  GD
Sbjct: 453 LEQMAYHDRLTGLANRALLFDRLSQALFNARRKQTMVAILFIDLDGFKGVNDQYGHDAGD 512

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSEQEAAILANDLRKIIENSQINI 210
            V+  ++++ +        V R GG+EF      L  ++ EA ++A +L + +    I +
Sbjct: 513 LVLKTIAERFLARVRATDTVARTGGDEFVIVLNELNRAD-EAGLVAQNLLEAVA-PDIAL 570

Query: 211 SSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +SG +  +  S GI+   H    + T++  AD A+Y AKK+G+N+ V   D
Sbjct: 571 ASGTTCRVGASIGISLFPHDGIDMDTLLMAADAAMYQAKKAGKNQTVFADD 621


>gi|265985630|ref|ZP_06098365.1| diguanylate cyclase [Brucella sp. 83/13]
 gi|264664222|gb|EEZ34483.1| diguanylate cyclase [Brucella sp. 83/13]
          Length = 266

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 9/164 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF--ISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGD 152
           N + +    D L+GLLN       + L  +  +     ++  DID+FK IND +GHPVGD
Sbjct: 87  NELQRARDSDPLTGLLNRRGLERQADLRLHTPQCLSYGVIIADIDHFKAINDAYGHPVGD 146

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-IS 211
           +V+   +  L         VGR+GGEEF     G++E E   L N L  ++     + + 
Sbjct: 147 QVLVEFARILSSASKDHAIVGRVGGEEFVLLVSGTAE-ECEALGNRLCGLVARHAFSKLP 205

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +G    +T S GIA     E +     RAD AL   K  GRNRV
Sbjct: 206 AGQK--VTSSFGIAMVRSGETLWETAARADLALMRVKNLGRNRV 247


>gi|322419612|ref|YP_004198835.1| diguanylate cyclase/phosphodiesterase [Geobacter sp. M18]
 gi|320125999|gb|ADW13559.1| diguanylate cyclase/phosphodiesterase [Geobacter sp. M18]
          Length = 538

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 90/175 (51%), Gaps = 11/175 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           ++ K   ++  ++  ++  D L+GL N +     L         + +K+++++ D+D+FK
Sbjct: 80  TMTKAAELAIQQMWYMAEHDVLTGLPNRTLLADRLSQSIAFAQRHGKKVALMYLDLDHFK 139

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND+ GH VGD+++  ++ +L         V R GG+EF        E + A+L    +
Sbjct: 140 HVNDSLGHSVGDQLLQSVAKRLRASVRLSDTVSRQGGDEFVVLLNEIDEAQDAVLI--AK 197

Query: 201 KIIEN-SQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
           KII   +  +  S   +H+T+S GI+        + T++  AD A+Y  KK+GRN
Sbjct: 198 KIIAAMAPPHFVSDNQLHVTVSIGISIYPDDGRDVETLLRNADTAMYQTKKTGRN 252


>gi|241766460|ref|ZP_04764331.1| diguanylate cyclase/phosphodiesterase [Acidovorax delafieldii 2AN]
 gi|241363333|gb|EER58859.1| diguanylate cyclase/phosphodiesterase [Acidovorax delafieldii 2AN]
          Length = 632

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 17/173 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAF----------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           NR+  L+  D ++G  N  AF           S+LGS   +L++++ D+D FK +ND FG
Sbjct: 203 NRLHALAHTDAVTGTGNRHAFNERLAAEILRASNLGS---RLALIYIDLDNFKTLNDTFG 259

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENS 206
           H  GD ++  ++ +L         + RLGG+EFA    L  +++        +  I +++
Sbjct: 260 HAAGDGLLRQVAVRLRSAVRAGDSISRLGGDEFAVILRLDMNDETLTRYGQRIVDIFQST 319

Query: 207 QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +  G  + +T SAGIA          +++  AD A+Y AK+ G+NR V F
Sbjct: 320 YTEV--GQQVSVTCSAGIATFPDDASDRDSLVSNADTAMYRAKEMGKNRCVRF 370


>gi|239814969|ref|YP_002943879.1| diguanylate cyclase with PAS/PAC sensor [Variovorax paradoxus S110]
 gi|239801546|gb|ACS18613.1| diguanylate cyclase with PAS/PAC sensor [Variovorax paradoxus S110]
          Length = 1026

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/136 (35%), Positives = 69/136 (50%), Gaps = 11/136 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  L+RID L+GL N  AF       I+        L+++F DIDYFK IND  GH  G
Sbjct: 856 KLIDLARIDTLTGLANRLAFNEFLPGAIARAQRSGNALAVLFLDIDYFKTINDTLGHATG 915

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINI 210
           D V+   + +L+    +   V RL G+EF         +EAA+     RKI+E    +  
Sbjct: 916 DGVLVEYAQRLLASVRSTDTVARLAGDEFVVVLENVHTREAAVAV--ARKIVERVGTVPF 973

Query: 211 S-SGPSIHITISAGIA 225
              G S+++T S GIA
Sbjct: 974 ELDGRSLNVTTSIGIA 989


>gi|149189378|ref|ZP_01867663.1| GGDEF family protein [Vibrio shilonii AK1]
 gi|148836736|gb|EDL53688.1| GGDEF family protein [Vibrio shilonii AK1]
          Length = 511

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 14/190 (7%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSR-------IDCLSGLLNHSAFISSLGSY----N 126
           IS+LL Y+   +L+E       +S+ +R        D L+ + N  AF + L  Y    N
Sbjct: 323 ISILLAYVVQLMLREQRRLTKLVSRRTRDLQYLVERDPLTEVYNRRAF-NRLADYHISCN 381

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           +  S+V  DID FKQIND +GH  GD+++  ++  +         + RLGG+EFA  +  
Sbjct: 382 KPFSLVIIDIDKFKQINDKYGHVSGDEILMQVAAYIKAQLYPDDMLFRLGGDEFAVISRC 441

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
             E+   I  N++ + I   + + +  P+   T+S G A     E +  ++ RAD  LY 
Sbjct: 442 VDEELLNIYLNEVCEDISFMKWD-TIDPNFVCTLSIG-ASVFRGESLEKLMNRADDLLYR 499

Query: 247 AKKSGRNRVV 256
           +K  GRNR +
Sbjct: 500 SKDKGRNRAM 509


>gi|189426658|ref|YP_001953835.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter lovleyi SZ]
 gi|189422917|gb|ACD97315.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter lovleyi SZ]
          Length = 310

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 12/165 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +LS  D L+GL N    + +L          + +++++  DID+FK++ND  GH  GD V
Sbjct: 140 ELSNTDHLTGLFNRRFLMEALDKEVQRARRKDGQVALLLMDIDHFKRVNDTHGHLQGDVV 199

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  +     +     R GGEEF A    +S +EA  +A+ +R  ++       S  
Sbjct: 200 LQKVALHIQKELRSYDIAARYGGEEFVAVLPDTSLKEAFNVADRIRLSVQGMHF-AGSLA 258

Query: 215 SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  +T+S G+A     C  + I  ++  AD+ALY AK+ GRNRV+
Sbjct: 259 NERVTVSLGVALFPSPCFDD-IDGLLRAADEALYQAKERGRNRVI 302


>gi|34498028|ref|NP_902243.1| transmembrane protein [Chromobacterium violaceum ATCC 12472]
 gi|34332837|gb|AAQ60243.2| probable transmembrane protein [Chromobacterium violaceum ATCC
           12472]
          Length = 938

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 14/163 (8%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           SQ+++ D ++GLLN +AF+  L           + L+++F DID+FKQ+ND  GH  GD+
Sbjct: 772 SQVTQ-DAMTGLLNRAAFMDILNDEIKHHYLKRQALALLFLDIDHFKQVNDTLGHAAGDE 830

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ--EAAILANDLRKIIENSQINIS 211
           +I   + +L         V RLGG+EF    +G   +    A++   +  +  ++++   
Sbjct: 831 LIKIFARRLRQNVRGTDHVARLGGDEFVVLLVGLDAECTATAVVDKLMAAVCRDAEL--- 887

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRN 253
           +G    ++ S G+A     +     + + AD+ LY AK +GRN
Sbjct: 888 AGKPHRVSTSIGVAYAYMPDITPERLLKIADEGLYQAKSAGRN 930


>gi|325283596|ref|YP_004256137.1| diguanylate cyclase [Deinococcus proteolyticus MRP]
 gi|324315405|gb|ADY26520.1| diguanylate cyclase [Deinococcus proteolyticus MRP]
          Length = 472

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 17/173 (9%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           EL  S   +  L+  D L+GL N ++F+     SLG+ NE   +   D++ FKQIND FG
Sbjct: 307 ELEASRQELEHLAYHDVLTGLSNRASFVHFCEGSLGA-NEPYVVFSLDLNGFKQINDTFG 365

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-----SSEQEAAILANDLRKI 202
           H VGD+++   + QL      P  V R GG+EF     G      ++  A ++A ++R  
Sbjct: 366 HAVGDRMLQHAAQQLARTVAAPGRVFRWGGDEFVIVVPGVQRSADADALARLIAVNIRTP 425

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK-KSGRNR 254
           +      +S G S+   +  G           T++  AD  +Y  K +SG +R
Sbjct: 426 MNYRGHQLSVGTSVGYALGRG------NRNYETLLSLADDDMYSGKQRSGNSR 472


>gi|307297450|ref|ZP_07577256.1| diguanylate cyclase with PAS/PAC and GAF sensors [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916710|gb|EFN47092.1| diguanylate cyclase with PAS/PAC and GAF sensors [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 782

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 17/172 (9%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +  +  LS  D L+G  N           I     Y+ K+ ++ FDID FK +ND  GH 
Sbjct: 610 HEEVRDLSVRDYLTGAYNRRGLFEHGEREIEKAKRYDTKMGLIMFDIDNFKNMNDMLGHL 669

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIEN 205
            GD V+  +++    +        R GG+EF        + ++E+ A  +   L    E+
Sbjct: 670 AGDFVLKRVANICTKILRAADIFARYGGDEFIILLPMTDITNTEEAATRICRSL----ED 725

Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S+I     P I +  S GIA    H++ +  +I RAD+ LYV+K+SG N+V 
Sbjct: 726 SRIIYKRIP-IKVRASFGIANFEGHEDELEDMIRRADRNLYVSKRSGGNKVT 776


>gi|228961612|ref|ZP_04123221.1| Sensory box protein [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228798094|gb|EEM45098.1| Sensory box protein [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 735

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVMFLDLDRFKKINDR 355

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD ++  ++ +L     +   V R GG+EF         +++AI   +    I N
Sbjct: 356 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 415

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I  G  + IT S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 416 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKGNGKNRFVFFS 469


>gi|304407227|ref|ZP_07388880.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9]
 gi|304343668|gb|EFM09509.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9]
          Length = 399

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 12/163 (7%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+  LN   F       ++        +S + FDID FK IND +GH  GD+V
Sbjct: 221 RLASFDDLTNTLNRRTFALEANRCLAEHAKRRMPISFLLFDIDNFKVINDTYGHMAGDEV 280

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++ Q+           R GG+EF    LG  E  +  LA  +++ +  +    S G 
Sbjct: 281 LQDMTSQIRSQLDREALFVRYGGDEFGIMLLGMDETASNRLAERMKESLGGAA---SRGL 337

Query: 215 SIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRV 255
               TIS G+       +  +ST+    D+ALY+AK  GRN V
Sbjct: 338 PAAYTISIGVITIVPDRQTELSTLYSSCDKALYMAKNKGRNHV 380


>gi|288957165|ref|YP_003447506.1| diguanylate cyclase [Azospirillum sp. B510]
 gi|288909473|dbj|BAI70962.1| diguanylate cyclase [Azospirillum sp. B510]
          Length = 302

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 11/165 (6%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S +D L+GL        +L   + +         +   DID FK IND++GH +GD+V+A
Sbjct: 124 SGLDPLTGLRTRRGMGEALEREHNRYRRTGQPFCVALCDIDKFKGINDSYGHDIGDRVLA 183

Query: 157 FLSDQLVVVFGTPMFVG--RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
             +   V+  G   F    R+GGEEF      +   E   +   LR  +  S + +  G 
Sbjct: 184 ATA--AVISRGVRSFDEAFRMGGEEFLVCLKETGLDEGHAVIERLRVDLMRSPVVLPDGR 241

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I +T S G+ E      +  ++  AD+ALY AK SGRNRV+ + 
Sbjct: 242 MIPVTASFGLVEAVADLTVEDLVVCADRALYQAKNSGRNRVIRYG 286


>gi|283850197|ref|ZP_06367486.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
 gi|283574223|gb|EFC22194.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
          Length = 288

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 92/190 (48%), Gaps = 29/190 (15%)

Query: 93  LFISYNRISQLSRI-------------DCLSGLLNHSAFISSLGS-------YNEKLSIV 132
           L +S N +  LSRI             D L+ L N  AF   L +         + L++V
Sbjct: 71  LPLSANPLPYLSRIQETLKELVFLSEHDPLTKLYNRGAFERILSAELIRSSRAGQSLALV 130

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            FD+D FK IND +GHP GD+V+  +   L+    T     R+GGEEFA          A
Sbjct: 131 LFDLDDFKAINDTYGHPCGDRVLETIGALLLAEKRTYDTAARVGGEEFALILPSVGLVRA 190

Query: 193 AILANDLRKIIENSQINISSG--PSIHITISAGIAERCHKEPISTIIYR----ADQALYV 246
           A++   +   + + +I +  G    + ITISAG+A    K  ++T + +    AD ALY 
Sbjct: 191 AMVIERIVAAVRSLKI-VCDGVDTPLCITISAGLA--ITKGKMATTLDKLYALADGALYE 247

Query: 247 AKKSGRNRVV 256
           AK  G++R+V
Sbjct: 248 AKSGGKDRIV 257


>gi|229514988|ref|ZP_04404448.1| GGDEF family protein [Vibrio cholerae TMA 21]
 gi|229347693|gb|EEO12652.1| GGDEF family protein [Vibrio cholerae TMA 21]
          Length = 429

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 8/132 (6%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+IND +GH  GD+++  ++  L         + R GGEEF       S +EA  
Sbjct: 299 DIDHFKKINDQYGHITGDRILQAVASCLRKNVRDGDTIIRFGGEEFLLLFQAHSNKEAWY 358

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + + LR+ +++      +  SI  T   G         +   I RAD ALY AK++GRN+
Sbjct: 359 MLDRLRQRVKDDHSLYGTTISIGFTFIDG--------SLPAAISRADTALYQAKEAGRNQ 410

Query: 255 VVCFSDIENNTC 266
           VV  S+ EN++ 
Sbjct: 411 VVADSEKENDSA 422


>gi|184159809|ref|YP_001848148.1| GGDEF domain-containing protein [Acinetobacter baumannii ACICU]
 gi|183211403|gb|ACC58801.1| GGDEF domain protein [Acinetobacter baumannii ACICU]
 gi|322509722|gb|ADX05176.1| Putative GGDEF family protein [Acinetobacter baumannii 1656-2]
          Length = 552

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 9/164 (5%)

Query: 99  RISQLSRIDCLSGLLNH---SAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152
           ++  ++  D L+G+ N    S ++  + SY +K S   ++  DID FK +ND +GH VGD
Sbjct: 389 QLKNIANTDPLTGVSNRLALSEYLKIVESYPQKFSQTCLMIIDIDRFKHVNDQYGHIVGD 448

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
           +VI  ++DQL         + R GG+EF          +A +LA  +R  I   +I++S 
Sbjct: 449 QVIRRIADQLKANVRASDLIVRYGGDEFLILLEQVQFLDARLLAEKIRIAISLEEIDLSG 508

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   +H+++S G A          ++  AD++L  AK  GRN V
Sbjct: 509 TQEKLHVSVSIGFA--IGATSWMELLENADRSLLRAKARGRNVV 550


>gi|172037208|ref|YP_001803709.1| regulatory components of sensory transduction system [Cyanothece
           sp. ATCC 51142]
 gi|171698662|gb|ACB51643.1| probable regulatory components of sensory transduction system
           [Cyanothece sp. ATCC 51142]
          Length = 484

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 19/171 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++S L+ +D L+ + N   F   L           + LS++  D+D+FK  ND +GHP G
Sbjct: 309 KLSYLAVVDDLTEIANRRRFDDFLNKEWRRLLRTQDPLSLILLDVDFFKCYNDYYGHPKG 368

Query: 152 DKVIAFLSDQLV--VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI- 208
           D  +  ++ QL    V      V R GGEEFA     + ++ A I+A  + + I N++I 
Sbjct: 369 DDCLVKIA-QLANNSVSRCSDLVARYGGEEFAVILPNTDKRGAIIVAQRIHQNIRNARIP 427

Query: 209 -NISSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNR 254
              S   SI I++S G+A  C     +E    +I  ADQALY AK  GR+R
Sbjct: 428 HETSKKGSI-ISVSLGVA--CLIPSLQESPKNLINLADQALYQAKNQGRDR 475


>gi|116251057|ref|YP_766895.1| sensory box GGDEF/EAL domain-containing protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115255705|emb|CAK06786.1| putative sensory box GGDEF/EAL domain protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 765

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 94/189 (49%), Gaps = 13/189 (6%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNE 127
            +T+  L  +I+G  ++   +  +RI  ++  D L+GL N +     L S        N 
Sbjct: 310 EMTLVALATHIAGIAIERKRVD-DRIHFMAHHDDLTGLPNRAFLKERLASILDQARRNNR 368

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           K+++ + D+D FK IND  GH  GD+V+   + ++         V RLGG+EF    +  
Sbjct: 369 KVTVAYIDLDNFKDINDGRGHAAGDEVLKETAARMANSVRASDMVVRLGGDEFLVVLVHQ 428

Query: 188 SEQEAAILA--NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQAL 244
           S  +A I     DL+K I N  I  ++G  I +T S G+A        S  ++  AD+A+
Sbjct: 429 SSHDAGITRRLRDLQKAI-NRPIRGANG-EITVTSSIGVAAFPFDGATSEELLANADRAM 486

Query: 245 YVAKKSGRN 253
           Y AK+ GRN
Sbjct: 487 YRAKELGRN 495


>gi|254228268|ref|ZP_04921697.1| ggdef domain protein [Vibrio sp. Ex25]
 gi|262394171|ref|YP_003286025.1| GGDEF family protein [Vibrio sp. Ex25]
 gi|151939341|gb|EDN58170.1| ggdef domain protein [Vibrio sp. Ex25]
 gi|262337765|gb|ACY51560.1| GGDEF family protein [Vibrio sp. Ex25]
          Length = 657

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 11/164 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGD 152
           +  Q ++ID L+  LN +A I ++     K        +   D+D FK IND +GHP GD
Sbjct: 477 QTRQKAKIDSLTCALNRAAIIETIKGQTSKADEDFRYVLALIDLDDFKTINDQYGHPTGD 536

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  +   L        ++GRLGGEEF        E +       L K I   ++   +
Sbjct: 537 LVLQQVCQVLKAKLNKGEYIGRLGGEEFILLLKNVDEIDVPFRVQSLHKTISEKRVRTVN 596

Query: 213 GPSIHITISAGIAERCHKEPISTI--IYR-ADQALYVAKKSGRN 253
              + +T  A +A      P++    +Y   DQALY AKK G+N
Sbjct: 597 NSDLSVT--ASLAYLSTSMPLTNFDELYSILDQALYQAKKQGKN 638


>gi|327482725|gb|AEA86035.1| GGDEF family protein [Pseudomonas stutzeri DSM 4166]
          Length = 397

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 109/236 (46%), Gaps = 10/236 (4%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS 86
           F +  + ++++  A +I +A++ +  + LTP    E+ +   +S  ++ + I  +  Y+ 
Sbjct: 153 FFLGVTFWWALLCAVLIVVADVLIAGLILTPEQMPEHWIA--VSYYLLLLIIGAISRYVH 210

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
               ++ F+    +  ++  D LSGL N  +        I+      + LS++  D+D F
Sbjct: 211 EYSQRDQFLMRKLLGWVAEHDALSGLANRRSHDLALRQRIAQARRDRQPLSLLLLDLDDF 270

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILAND 198
           K  ND FGHP GD +I    + +      P+    R+GGEEFA          A  +A  
Sbjct: 271 KAYNDTFGHPAGDALIRSFGELVAKFARRPLDQAARVGGEEFALLLYNCDNAAAQRIARQ 330

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           L   +   ++     P+  + +S G+A     +    + + AD ALY AK +G+NR
Sbjct: 331 LVAALAALEVRHPRDPASRVGVSIGVATLQDGQQAEQLYHNADMALYQAKTTGKNR 386


>gi|328542950|ref|YP_004303059.1| Cyclic diguanylate phosphodiesterase domain protein [polymorphum
           gilvum SL003B-26A1]
 gi|326412696|gb|ADZ69759.1| Cyclic diguanylate phosphodiesterase domain protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 677

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 16/171 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL----------SIVFFDIDYFKQINDNFGHP 149
           I+ L+  D L+GL N + F + L   NE L          +++  D+D FK IND +GH 
Sbjct: 245 IAFLAHHDPLTGLPNRAVFSARL---NEALRLAHAKASNIAVILIDVDKFKAINDTYGHG 301

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  ++D+L  VFG    V RL G+EF A  +GS    A +       I       
Sbjct: 302 TGDIYLQVIADRLRAVFGD-HLVSRLSGDEF-AVMIGSVSDVARLTRLAAEMISATKAPC 359

Query: 210 ISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFS 259
           I  G  I I++S GIA        S+ +++ AD ALY AK SGR+  V ++
Sbjct: 360 IIDGKEIPISLSLGIARATDGSWRSSRLLHCADLALYKAKHSGRSMFVWYT 410


>gi|315635380|ref|ZP_07890646.1| GGDEF/PAS domain protein [Arcobacter butzleri JV22]
 gi|315480138|gb|EFU70805.1| GGDEF/PAS domain protein [Arcobacter butzleri JV22]
          Length = 1115

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 71/148 (47%), Gaps = 14/148 (9%)

Query: 114  NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            N+   I    + + KL++   DID+FK +ND +GH VGD+V+     Q V +        
Sbjct: 975  NYKKLIYEYNTNHSKLAVAMLDIDHFKLVNDTYGHDVGDEVLI----QFVEIINNSSRKN 1030

Query: 174  ----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERC 228
                R GGEEF      +SE     +  +LRK IE+        P I   T S G     
Sbjct: 1031 DILIRWGGEEFILVLQLNSENTLPKILENLRKAIEDYDF-----PRIGKKTCSIGGTIYQ 1085

Query: 229  HKEPISTIIYRADQALYVAKKSGRNRVV 256
              E I   I RAD+A+Y AK +GRN+V+
Sbjct: 1086 ENEDIIKTIKRADEAVYEAKAAGRNKVI 1113


>gi|289164232|ref|YP_003454370.1| regulatory protein (GGDEF domain) [Legionella longbeachae NSW150]
 gi|288857405|emb|CBJ11233.1| putative regulatory protein (GGDEF domain) [Legionella longbeachae
           NSW150]
          Length = 251

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 95/197 (48%), Gaps = 15/197 (7%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125
           +++IS  I+ LL      + +E  +  + + QLS  D L+GL N   F S L +      
Sbjct: 52  MLVISAKINNLLLKRVFRLSREKQVLIDDLHQLSLTDSLTGLDNRRYFESILKTEWGIAQ 111

Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAA 182
             +    ++  D+D FK INDN GHP GD  + F+++ L   F  +  F+ R+GG+EF+ 
Sbjct: 112 RNHYSFVLISIDVDNFKLINDNLGHPYGDHFLIFIAELLKSTFRRSNDFICRIGGDEFSV 171

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIA--ERCHKEPISTIIY 238
                S Q++  + N     I     N      I   IT+S G+A  +  +   I  +I 
Sbjct: 172 IIFNQSVQKSLAVCNSF---INKFNQNKPQEEVIMDKITLSMGVAWIKSNYSLQIEKLIT 228

Query: 239 RADQALYVAKKSGRNRV 255
            AD ALY AK  G+N V
Sbjct: 229 FADDALYKAKNKGKNTV 245


>gi|269962808|ref|ZP_06177149.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832498|gb|EEZ86616.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 527

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 91/199 (45%), Gaps = 21/199 (10%)

Query: 71  LVIISITISLLLGYISGSILKELFISY-NRISQLSR---IDCLSGLLNHSAFISSLGS-- 124
           L    + + L+L  I    LKE    + N ++QL +    D L+ L N       L    
Sbjct: 332 LTRFELQLKLILSEIENKELKETTQQHKNTVAQLQQDVFTDPLTSLHNRRWLEVKLKDLL 391

Query: 125 -YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEE 179
            ++   +++  DID+FK IND   H VGDK I  +S +L   F    F G    R GGEE
Sbjct: 392 LHDTPFALLVIDIDHFKSINDELSHLVGDKAIVNVSKELSGYF---KFRGSSCVRFGGEE 448

Query: 180 FAAAALGSSEQEAAILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEPISTI 236
           F      +   +A + A + R+ I      +I    G    +T+S GI      E     
Sbjct: 449 FLVILENTEVAKAEMHAENYRERIYQFGWHEILGERG----LTVSIGITLHREGENTQRT 504

Query: 237 IYRADQALYVAKKSGRNRV 255
            YRAD+ALY AK +GRN+V
Sbjct: 505 FYRADKALYRAKANGRNQV 523


>gi|262165019|ref|ZP_06032757.1| GGDEF family protein [Vibrio mimicus VM223]
 gi|262027399|gb|EEY46066.1| GGDEF family protein [Vibrio mimicus VM223]
          Length = 412

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 23/168 (13%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+ +    A    L    +K ++   D+D+FK+ ND +GH  GD V+  ++ +L ++ 
Sbjct: 241 DPLTQIPGRQALDQDLKHIGKKFTLAMLDVDHFKKFNDTYGHDTGDDVLKLVASRLRLIE 300

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPS-------- 215
           G    V R GGEEF+         E       LR+ IE+ ++   N S  P         
Sbjct: 301 GKAR-VYRYGGEEFSIIYRNRLADEVLPFIEALRQDIESYELVIRNSSKRPKSDTEGAKK 359

Query: 216 ---------IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
                    + ITIS G+ + + H+ P +  +  AD ALY AK++GRN
Sbjct: 360 RTRKSNSDIVTITISIGVCDSQLHRNP-NEALKAADAALYKAKQAGRN 406


>gi|220913598|ref|YP_002488907.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Arthrobacter chlorophenolicus A6]
 gi|219860476|gb|ACL40818.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Arthrobacter chlorophenolicus A6]
          Length = 584

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 82/171 (47%), Gaps = 16/171 (9%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147
           ++   + +L+  D L+GL N +   +  G            L  +F D+D+FK +ND+ G
Sbjct: 148 LAEQELQRLALHDSLTGLPNRAGLKARFGEAPPDSAIEGNPLGALFIDLDHFKAVNDSLG 207

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-- 205
           H  GD ++  ++ +L      P  V RL G+EF      +  +EAA LA  L  +I    
Sbjct: 208 HGAGDNLLVSVAGRLAAAVQAPGAVARLSGDEFVVVDTVAGTEEAAALAARLLDVIAAPI 267

Query: 206 --SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
               + I +  SI I ++     R   + +  +I RAD A+Y AK+ GRNR
Sbjct: 268 HLEDLEIVTSASIGIAVA-----RAGDDTLEDLIRRADIAMYRAKERGRNR 313


>gi|159035937|ref|YP_001535190.1| diguanylate cyclase with GAF sensor [Salinispora arenicola CNS-205]
 gi|157914772|gb|ABV96199.1| diguanylate cyclase with GAF sensor [Salinispora arenicola CNS-205]
          Length = 500

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 11/158 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           R+ + +  D L+GL +   F   + +    + +++  D+D FK +ND +GH  GD+V+  
Sbjct: 348 RLREQASSDPLTGLRHTGPFGERIAAATPGRTALLAIDVDGFKSVNDTYGHQAGDRVLVD 407

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           L+  L         + R GG+EF A    +  +EA  +A    ++ E ++        I 
Sbjct: 408 LARALEGALRQNDELYRTGGDEFVAVIEVNRPEEAVRVAE---RLTEAAR-------RIG 457

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            TIS G+A     EP    ++RADQALY  K+ GR+ V
Sbjct: 458 RTISVGVALPHPDEPADRTLHRADQALYRVKREGRDGV 495


>gi|154500230|ref|ZP_02038268.1| hypothetical protein BACCAP_03894 [Bacteroides capillosus ATCC
           29799]
 gi|150270962|gb|EDM98236.1| hypothetical protein BACCAP_03894 [Bacteroides capillosus ATCC
           29799]
          Length = 485

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 10/168 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-NEKLS-----IVFFDIDYFKQINDNFGHPVGD 152
           R+ Q +  D L+GLLN  +   S+  + NE+       ++  D+D+FK+IND +GH  GD
Sbjct: 316 RLMQKAEEDPLTGLLNKESTARSITDWLNEERCKGFQVLLMVDLDHFKEINDTYGHATGD 375

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINI 210
            V+   +  L  VF     VGR+GG+EF      +G+ E    +++  L   I +  ++ 
Sbjct: 376 LVLKKAAQVLRGVFRETDIVGRVGGDEFMVFLKNVGNPEVVQRLMST-LNSRIRSVTVDD 434

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
               ++  +I A    R H +  + +   AD+ALY AK++GRN    F
Sbjct: 435 LPEETLSCSIGAAFYPR-HGKDFTLLYENADRALYEAKRAGRNGHAVF 481


>gi|157376254|ref|YP_001474854.1| GGDEF domain-containing protein [Shewanella sediminis HAW-EB3]
 gi|157318628|gb|ABV37726.1| FOG: GGDEF domain containing protein-like protein [Shewanella
           sediminis HAW-EB3]
          Length = 309

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 118/251 (47%), Gaps = 32/251 (12%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS 88
           IY  + F I   + +++ N+  F   +      +  L+E+L     +  IS+L+G    +
Sbjct: 63  IYTPLLFGI---SALYLGNLLNFLDDIYDLGRPQIALIEDL--FETAGLISVLVGVTLWA 117

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------------------- 128
              +  I Y  + +LSRID L+GLLN  A I+++ +Y ++                    
Sbjct: 118 QHHQNQIKY--LLKLSRIDPLTGLLNRRAAIAAIKAYGKEDVQEPGNTSPKEWSFKHEAD 175

Query: 129 ---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
                ++  D+D+FK +ND  GH  GDK++  +S  L         + R GGEEF     
Sbjct: 176 KPIHCVMILDLDHFKGVNDTLGHDAGDKLLCDISSLLQQQSQNDCIIARWGGEEFLVYHR 235

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQAL 244
            +S++E   LA  L+  I +   +  + P I +T+S G++    +E  +   I  AD AL
Sbjct: 236 ANSKEECLDLALSLKYKIGHHPFSYDTTP-IKVTVSIGVSTYSAEEFYLFEAIKHADTAL 294

Query: 245 YVAKKSGRNRV 255
           Y AK +GR+ V
Sbjct: 295 YQAKAAGRDYV 305


>gi|86607844|ref|YP_476606.1| GGDEF/FHA domain-containing protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556386|gb|ABD01343.1| GGDEF/FHA domain protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 316

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 11/158 (6%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F+  L         +   L +++ D+D FKQIND +GH  GD+ +  ++
Sbjct: 156 DPLTGLYNRRFFLKQLELEIPFALRHRIPLHVLYLDLDGFKQINDRWGHWAGDQTLIQVA 215

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +L         V RLGG+EFA    G    +   LA  LR+ ++   +   +  +I ++
Sbjct: 216 RRLQAHVRQDDLVARLGGDEFALLVRGIPNSQILGLAERLRQAVQTLLVQAGT-ETISLS 274

Query: 220 ISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            S GIA   E        +++  AD+ALY AK  G NR
Sbjct: 275 CSVGIASLLELGEGTDPQSLLAAADKALYQAKAEGGNR 312


>gi|229527596|ref|ZP_04416987.1| GGDEF domain protein [Vibrio cholerae 12129(1)]
 gi|254226954|ref|ZP_04920519.1| GGDEF family protein [Vibrio cholerae V51]
 gi|125620522|gb|EAZ48891.1| GGDEF family protein [Vibrio cholerae V51]
 gi|229333958|gb|EEN99443.1| GGDEF domain protein [Vibrio cholerae 12129(1)]
 gi|327485590|gb|AEA79996.1| extracellular solute-binding protein, family 3/GGDEF domain protein
           [Vibrio cholerae LMA3894-4]
          Length = 412

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 23/168 (13%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+ +    A    L     K ++   D+D+FK+ ND +GH  GD V+  ++ +L  + 
Sbjct: 241 DPLTQIPGRQALDQDLKHIGRKFTLAMLDVDHFKKFNDTYGHDTGDDVLKLVASRLREIN 300

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSIH------ 217
           G    V R GGEEF+    G   +E       LR+ IE+ ++   + +  P  H      
Sbjct: 301 GKAR-VYRYGGEEFSIIYKGKLAKEVLPFIEALRQDIESYELVIRDTNQRPKSHAEGAKK 359

Query: 218 -----------ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
                      ITIS G+ +   ++ PI   +  AD ALY AK++GRN
Sbjct: 360 RSRKSNSDIVTITISIGVCDSELYRHPIEA-LKAADGALYKAKQAGRN 406


>gi|332702252|ref|ZP_08422340.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552401|gb|EGJ49445.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 556

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 11/165 (6%)

Query: 100 ISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L   D L+GL+NH+       + +S        L++   D+D FK +ND +GH  GD
Sbjct: 390 MRRLMDRDSLTGLVNHTNIKLRLASELSRTQRQGATLALAMIDLDRFKNVNDTYGHLTGD 449

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS 211
            V+  L+  L         VGR GGEEFA   +    E+EA  + + +RK    ++I   
Sbjct: 450 LVLKSLAKTLKRRLRKADIVGRYGGEEFAVILVDVQGEREALAIMDSIRKGF--ARIRHR 507

Query: 212 SGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G     +T S G+A          +   AD+A+Y AK+ GRNR+
Sbjct: 508 GGDREFCVTFSCGLALSSGGHSAEELCQAADRAMYKAKELGRNRI 552


>gi|317506974|ref|ZP_07964743.1| GGDEF domain-containing protein [Segniliparus rugosus ATCC BAA-974]
 gi|316254732|gb|EFV14033.1| GGDEF domain-containing protein [Segniliparus rugosus ATCC BAA-974]
          Length = 410

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 101/196 (51%), Gaps = 17/196 (8%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLS------GLLNHSA-FISSL 122
           +L I++   +++L  +  S L+    +  R+S+    D L+      GL+ H+A  +++ 
Sbjct: 156 TLFIVAAPAAMVL--VVRSSLERALAALRRVSE---TDPLTEALNRRGLVAHTADLVATA 210

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
              N  L ++  D D+FK IND +GH  GD ++A  ++ +         V R+GG+EF  
Sbjct: 211 VRQNCDLGLLVLDFDHFKGINDRYGHTAGDAILARSAEAIRASLSPKALVARVGGDEFIV 270

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI-SAGIAERCHKEP----ISTII 237
               + + E A  A+ +R++IE+   +  S  +++  I S  IA    K+     ++ + 
Sbjct: 271 LWPIADQLELAWQADCIRRMIESQTPSTISAGALYCPIRSRRIAVPTDKDASADLLAQLA 330

Query: 238 YRADQALYVAKKSGRN 253
            +ADQ LY AK++GRN
Sbjct: 331 QQADQLLYRAKRAGRN 346


>gi|262199072|ref|YP_003270281.1| diguanylate cyclase [Haliangium ochraceum DSM 14365]
 gi|262082419|gb|ACY18388.1| diguanylate cyclase [Haliangium ochraceum DSM 14365]
          Length = 364

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 84/173 (48%), Gaps = 11/173 (6%)

Query: 96  SYNRISQLSRI-DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFG 147
           ++ R+ Q S + D L+   N   F   L S       + E LS++  D+D FKQIND +G
Sbjct: 134 TFQRLMQESALRDGLTQAYNKRYFSERLDSEVRFAQRHKEPLSLLLMDLDGFKQINDRYG 193

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+V+   +  +           R GGEEFA  +   S ++A  +A  LR +     
Sbjct: 194 HIAGDQVLHAFARAVQRSIRNEDVFARYGGEEFAVLSRSISVEDALSMAERLRALTAELT 253

Query: 208 INISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   +   I +T+S G+A          + ++  AD+ALY AK  GRN+VV F
Sbjct: 254 VEFQN-RRIGLTVSIGVASVPELQVADCTELLGAADRALYWAKAHGRNQVVLF 305


>gi|255744975|ref|ZP_05418925.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262161739|ref|ZP_06030757.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|262169613|ref|ZP_06037304.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|255737446|gb|EET92841.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262021847|gb|EEY40557.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|262028471|gb|EEY47126.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
          Length = 392

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 8/132 (6%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+IND +GH  GD+++  ++  L         + R GGEEF       S +EA  
Sbjct: 262 DIDHFKKINDQYGHITGDRILQAVASCLRKNVRDGDTIIRFGGEEFLLLFQAHSNKEAWY 321

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + + LR+ +++      +  SI  T   G         +   I RAD ALY AK++GRN+
Sbjct: 322 MLDRLRQRVKDDHSLYGTTISIGFTFIDG--------SLPAAISRADTALYQAKEAGRNQ 373

Query: 255 VVCFSDIENNTC 266
           VV  S+ EN++ 
Sbjct: 374 VVADSEKENDSA 385


>gi|254733613|ref|ZP_05191331.1| sensory box/GGDEF family protein [Bacillus anthracis str. Western
           North America USA6153]
          Length = 385

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 27/184 (14%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144
           L+    ++  L+  D L+GL N   F   L         S N+ ++++F D+D FK+IND
Sbjct: 165 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 223

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
             GH +GD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +    
Sbjct: 224 RLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQI---- 279

Query: 204 ENSQINISSGP------SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               +NI + P       + IT S GIA    C  + ++ ++  AD A+Y AK +G+NR 
Sbjct: 280 ----LNILNKPFFIKDEELSITPSIGIAMYPDCGTD-VTELMKNADMAMYRAKANGKNRF 334

Query: 256 VCFS 259
           V FS
Sbjct: 335 VFFS 338


>gi|261340951|ref|ZP_05968809.1| diguanylate cyclase [Enterobacter cancerogenus ATCC 35316]
 gi|288316811|gb|EFC55749.1| diguanylate cyclase [Enterobacter cancerogenus ATCC 35316]
          Length = 594

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 13/166 (7%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      +L +         E +S +  DID+FK IND FGH  GD+VI  ++
Sbjct: 430 DPLTGLRNRHHLEDTLRTQMTQAMRNKEPISCLMIDIDHFKSINDRFGHEAGDQVIKSVA 489

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQINISS-GPSI 216
             +           R GGEEF A   G+ E+ A   A  +   ++  +    ++  GP  
Sbjct: 490 TIIQRAVHDTGLAFRYGGEEFLALLTGADEEAAHACATKIYNGVQALSPHYGLTEIGP-- 547

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            + +S GIA          ++  AD ALY AK+ GR+R+V F  +E
Sbjct: 548 -VDVSIGIASYPQHAQSDNLLRAADVALYRAKELGRSRIVSFGMLE 592


>gi|146341041|ref|YP_001206089.1| signaling protein [Bradyrhizobium sp. ORS278]
 gi|146193847|emb|CAL77864.1| putative signaling protein containing multidomains (PAS/GGDEF/EAL)
           [Bradyrhizobium sp. ORS278]
          Length = 903

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 8/161 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +I+ L+  D L+ L N + F   L       +   +L++ + DID FK +ND  GH +GD
Sbjct: 464 QITHLAHYDALTELPNRTLFHERLKQEMLGVAQGRQLALHYIDIDEFKGVNDTLGHLIGD 523

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS 211
           +++  +   L    GT  FV RLGG+EFA       S ++ + L +D+   I   +  + 
Sbjct: 524 ELLKSVGRSLQACVGTAGFVARLGGDEFAVVQTTIKSREDVSCLIDDMLAAIRAPRDCLG 583

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
              +   +I   +  + H   +  I+  AD A+Y AK +GR
Sbjct: 584 HQLTADASIGVALIPQ-HGTDLDQIMKNADLAMYAAKAAGR 623


>gi|90410462|ref|ZP_01218478.1| hypothetical protein P3TCK_20925 [Photobacterium profundum 3TCK]
 gi|90328703|gb|EAS44987.1| hypothetical protein P3TCK_20925 [Photobacterium profundum 3TCK]
          Length = 1053

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 95/186 (51%), Gaps = 15/186 (8%)

Query: 84  YIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFF--D 135
           YIS G  + E  +  +++ +L+  D L+ L N    +  +      +   K S+V F  D
Sbjct: 597 YISTGKDITERVLFESKLHKLAHYDLLTELPNRLLLLQYIEQAITNAEEMKTSVVVFNID 656

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAI 194
           +D+FK+IND+ GH VGDKV+  ++ ++         + RLGG+EFA      +S Q  A 
Sbjct: 657 LDFFKKINDSLGHDVGDKVLITIAKRITRSLRDEDVLARLGGDEFAILIQSDTSSQSIAT 716

Query: 195 LANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGR 252
           LA    +II N   ++S    S+ IT S GIA        S  ++  +D ALY AK  GR
Sbjct: 717 LA---ERIINNICASLSIEEKSLSITASMGIAVYPENSVDSDALLKNSDIALYHAKDQGR 773

Query: 253 NRVVCF 258
           NR  CF
Sbjct: 774 NR-YCF 778


>gi|320161964|ref|YP_004175189.1| hypothetical protein ANT_25630 [Anaerolinea thermophila UNI-1]
 gi|319995818|dbj|BAJ64589.1| hypothetical protein ANT_25630 [Anaerolinea thermophila UNI-1]
          Length = 750

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 97/201 (48%), Gaps = 6/201 (2%)

Query: 57  PFYGLEYILVENL-SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH 115
           PF  +E   +E + S V+  I ++LL   ++  + +   I    + Q +R D L+GL N 
Sbjct: 545 PFEPVEIQTLEVVASGVLQVIELALLYASLNDELTERRRIETLLVHQNTR-DTLTGLYNR 603

Query: 116 SAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             F   +G    +   + ++  D+D+ K++ND FGH  GD+ I  ++  +     +    
Sbjct: 604 RVFEERIGYRAPHTMPVCLIVLDLDHLKRVNDTFGHTSGDEYIRLVAQAIQASVRSEDMA 663

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232
            R+GG+EF     G+ E     +   +++ ++ S ++  +  +  + +S G+A     EP
Sbjct: 664 ARIGGDEFVVILNGADESAGEAVMQRIQESLQ-SMLDPQNPVARMVRVSMGLAVSQPGEP 722

Query: 233 ISTIIYRADQALYVAKKSGRN 253
           +     RAD A+Y  K++ R 
Sbjct: 723 LLETYRRADTAMYAQKQAHRR 743


>gi|313672324|ref|YP_004050435.1| diguanylate cyclase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939080|gb|ADR18272.1| diguanylate cyclase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 314

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 10/165 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  ++  D ++ L NHS F  +L          +E  +I   D+DYFK +ND +GH  G
Sbjct: 144 KMEDIAIRDGMTKLFNHSYFRDTLLKKFEHAKLNHEIFTIAILDLDYFKHVNDRYGHLKG 203

Query: 152 DKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D+V+   +  +V +      +  R GGEEF A      + E AI   D  +     ++  
Sbjct: 204 DEVLKAFAMTIVEILDVKTDIPSRYGGEEF-AIIFDKQDVEKAIKKVDAIRQSFTEKVFT 262

Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
                  +T SAG+     K   I  +I  AD+ALY +KK GRNR
Sbjct: 263 YENSCFRVTFSAGLTHYSDKFADILEMIKYADEALYQSKKDGRNR 307


>gi|320105559|ref|YP_004181149.1| diguanylate cyclase [Terriglobus saanensis SP1PR4]
 gi|319924080|gb|ADV81155.1| diguanylate cyclase [Terriglobus saanensis SP1PR4]
          Length = 573

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 77/163 (47%), Gaps = 12/163 (7%)

Query: 107 DCLSGLLNHS----AFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      A    L     +   L+++  D+D+FK  ND FGH  GD V+  + 
Sbjct: 402 DVLTGLFNRRFMEVALERELHRATRRGSSLAVLLLDVDHFKDFNDTFGHEAGDVVLREVG 461

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
              +    T   V R GGEEF       + + A   A  +R+ I   +I     P  HI+
Sbjct: 462 ACFLQSVRTEDIVCRYGGEEFVIIFPEITAEMALQRAEKIREQISALRIQFKGQPLGHIS 521

Query: 220 ISAGIAERCHKEPISTI---IYRADQALYVAKKSGRNRVVCFS 259
           +S G+A      P S++   +  AD ALY AK+SGRNR V  S
Sbjct: 522 LSIGLA--MFPYPASSVDELLRMADHALYDAKQSGRNRTVVAS 562


>gi|289207541|ref|YP_003459607.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           K90mix]
 gi|288943172|gb|ADC70871.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           K90mix]
          Length = 667

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 19/171 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +R+   +  D L+GLLN  AF       + +   Y+   S+V  D+DYFK +ND  GH V
Sbjct: 489 DRLVHEASHDPLTGLLNRRAFEREMQRAMDNAREYSSVASLVLVDLDYFKAVNDRHGHQV 548

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+++  +   L  +  +   V R+GG+EFA  A  +  ++A IL   +   + +  + +
Sbjct: 549 GDELLRRVGTILRQLTRSRDAVARIGGDEFAVVAFDTDAEQARILGQRICSALGDRPLQV 608

Query: 211 SS-----GPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +     G S+  + + AG+A       +      AD+A Y AK  GR +V
Sbjct: 609 EARDVTIGASVGVVQLGAGLAG------VDAAFVAADRACYSAKSEGRGQV 653


>gi|171058030|ref|YP_001790379.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Leptothrix cholodnii SP-6]
 gi|170775475|gb|ACB33614.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptothrix cholodnii SP-6]
          Length = 898

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 19/170 (11%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
           S  RI QL+  D L+GL N +  +              ++L+++F D+D FK IND+ GH
Sbjct: 461 SAQRIHQLAYYDVLTGLPNRALLMDRCQHELARAMRDGKRLAVLFLDLDRFKHINDSLGH 520

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI------LANDLRKI 202
           PVGD ++  ++ +L         + RLGG+EF    L   E  A +      + +  R  
Sbjct: 521 PVGDGLLRAVAQRLQGTLRDSDTIARLGGDEF-IVLLEHVETSAGVELAARRILDAFRDP 579

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            +  +  +S G S+ I++        H   I+++   AD ALY AK +GR
Sbjct: 580 FQLEEHRLSVGASVGISLFPD-----HASDITSLFKYADLALYQAKAAGR 624


>gi|90418505|ref|ZP_01226417.1| signal transduction protein family [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90338177|gb|EAS51828.1| signal transduction protein family [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 467

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 78/163 (47%), Gaps = 12/163 (7%)

Query: 107 DCLSGLLNHSAFI----SSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           D LS L N  AF+     +L    E+     L+I + D+D FK IND  GH +GD +I  
Sbjct: 26  DSLSKLPNRPAFVLAANQALNGLQERGRGGSLTIGYLDVDRFKDINDTLGHHIGDGLIKA 85

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
             ++L    G   F+ R GG+EFA          A  LA+ + +  E  Q  +  G  I 
Sbjct: 86  FGERLRQHLGPHDFLARFGGDEFAIFRSRRGVSFAKPLASLVVEAFE--QPLLIEGHEIT 143

Query: 218 ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +T S G+A+   H   I  ++  AD ALY AK+ GR     F+
Sbjct: 144 VTASLGLAQFPEHGTSIEDLMRHADIALYEAKRLGRGHAAWFT 186


>gi|332706024|ref|ZP_08426097.1| response regulator receiver, modulated diguanylate cyclase [Lyngbya
           majuscula 3L]
 gi|332355284|gb|EGJ34751.1| response regulator receiver, modulated diguanylate cyclase [Lyngbya
           majuscula 3L]
          Length = 318

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 86/179 (48%), Gaps = 11/179 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           +L I+   + +L+ ID L+ + N  AF          L      LS+V  DID+FK+ ND
Sbjct: 139 QLKIANKELERLATIDGLTQVANRRAFDKYFNNEWYRLAREENPLSLVLCDIDFFKRYND 198

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLR-KI 202
            +GH  GD+ +  ++  L      P   V R GGEEF      +  Q A  +A  +  K+
Sbjct: 199 TYGHQSGDECLKQVAQILGEAAKRPGDLVARYGGEEFVVILPSTDIQGAIQVAETIETKL 258

Query: 203 IENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +  +  S  S  +T+S G A      K     + Y AD+ALY AK +GRNR+V  S
Sbjct: 259 YKKAIPHSGSLVSDIVTVSLGGASTIPSVKSSPDNLFYEADKALYKAKTAGRNRLVHVS 317


>gi|296272662|ref|YP_003655293.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
 gi|296096836|gb|ADG92786.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
          Length = 372

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 7/158 (4%)

Query: 106 IDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+G LN   + S          ++N   +I+F DID FK+IND  GH  GD ++   
Sbjct: 207 IDFLTGALNRRGYTSVILKVENRFVTFNSNYAIIFIDIDNFKEINDENGHECGDVILKSF 266

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           S  L  +      + R GGEEF      + E+E       +++II++ +   +    + +
Sbjct: 267 STILKKLMREEDVLCRYGGEEFVILVSYTEEEEVYKYIKRVKEIIDSHKFIYNKDLRVKV 326

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             SAG+A R         +  AD  LY AK  G++R++
Sbjct: 327 GFSAGVAYRTKYNSYEDAMKYADILLYKAKHEGKSRII 364


>gi|259156648|gb|ACV96591.1| response regulator receiver protein [Vibrio fluvialis Ind1]
          Length = 309

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 8/162 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS----SLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152
           +  L+ +D L+G+ N   F +     L  +  KLS   ++  DIDYFK+ ND FGH  GD
Sbjct: 141 LRSLAYLDGLTGIYNRRYFDNVLSIQLAQHRRKLSPLAVLMIDIDYFKKYNDTFGHLAGD 200

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +  ++  L  +      V R GGEEF      +    A  +A  +   +    I    
Sbjct: 201 DALRKVASALKHIGRQADMVARYGGEEFVVLLADTDINGAVTVAKKMLHHVLELDIAHPQ 260

Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
            P+  ++IS GIA     K   S II  ADQ LY++K+ GRN
Sbjct: 261 TPATKLSISVGIAVADEAKGYDSNIIELADQQLYLSKQRGRN 302


>gi|317054565|ref|YP_004118590.1| diguanylate cyclase [Pantoea sp. At-9b]
 gi|316952560|gb|ADU72034.1| diguanylate cyclase [Pantoea sp. At-9b]
          Length = 358

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 2/131 (1%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D FK +ND +GH  GD ++A +S  L    G      R GG+E       + ++
Sbjct: 225 LLLIDVDNFKAVNDTWGHEAGDFLLAEISALLRNYVGIQDIPARFGGDELGVIVHHAGDE 284

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
               LA  L++ I  +Q+ + + P    ++S GIA     E +   +  AD+ALY  K++
Sbjct: 285 SVVQLAERLKEKI--AQLRLPAAPDFSCSVSIGIASAASAESLGYWLRHADEALYEVKRA 342

Query: 251 GRNRVVCFSDI 261
           GRN V  +  +
Sbjct: 343 GRNGVRLWQPV 353


>gi|218439973|ref|YP_002378302.1| diguanylate cyclase [Cyanothece sp. PCC 7424]
 gi|218172701|gb|ACK71434.1| diguanylate cyclase [Cyanothece sp. PCC 7424]
          Length = 547

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 81/177 (45%), Gaps = 24/177 (13%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ +L  +D L+G+ N   F          +      LS++  DIDYFK  ND +GH +
Sbjct: 356 KRLRKLVYLDELTGIYNRRYFDHYLEREWRRMTREKAPLSLMLLDIDYFKNYNDTYGHQL 415

Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII------ 203
           GD  +  ++  +          V R GGEEFA        + A  LA  +R+ I      
Sbjct: 416 GDACLKKVAQAIQKSLKRSTDIVARYGGEEFAIIISQCDNKGALFLAEIIREQIKSLAIN 475

Query: 204 -ENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +NSQ+N+       +T S G+A        +P   +I  AD+ALY +K  GRNRV 
Sbjct: 476 HKNSQVNLKI-----VTASIGVATIIPALETQP-KMLIQMADEALYQSKHEGRNRVT 526


>gi|104779939|ref|YP_606437.1| hypothetical protein PSEEN0696 [Pseudomonas entomophila L48]
 gi|95108926|emb|CAK13622.1| conserved hypothetical protein; putative GGEDF protein; putative
           signal peptide [Pseudomonas entomophila L48]
          Length = 420

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 18/159 (11%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N + F   L           E L+++F D D+FKQIND+ GH VGD+V+  ++
Sbjct: 248 DSLTGLPNRAFFEGRLTRSLRNAARQQEHLALLFLDSDHFKQINDSLGHAVGDQVLISVA 307

Query: 160 DQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQ--INISSGPS 215
            ++         V RLGG+EFA   + L + E    I      KI+ + +  I +  G S
Sbjct: 308 SRVRAQLREHDLVARLGGDEFAVLLSPLQAREDAERI----AEKIVASMKLPIQLEDGNS 363

Query: 216 IHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGR 252
           I  ++S GIA      ++P S ++  AD A+Y AK+  R
Sbjct: 364 ITSSLSVGIAYYPDDGQDPAS-LLNAADAAMYQAKRKRR 401


>gi|56476210|ref|YP_157799.1| phospholipase A2 [Aromatoleum aromaticum EbN1]
 gi|56312253|emb|CAI06898.1| predicted phospholipase A2 [Aromatoleum aromaticum EbN1]
          Length = 1043

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 20/167 (11%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I +LS  D L+GL N S F       I +     E LS+++ DID+F+ IND  GH +GD
Sbjct: 607 IRRLSHFDTLTGLPNSSLFADLLRQAIGNAQRSGESLSVMYIDIDHFQHINDTLGHRIGD 666

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEF------AAAALGSSEQEAAILANDLRKIIENS 206
           +++  ++ +          + RLGG+EF      A     +   E  I+A     +IE+ 
Sbjct: 667 RLLVEIAGRFRNALCAENTLARLGGDEFLILLPHAQVECAAHVAEKLIVAAADPMLIEDH 726

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           ++ ++  PSI I +          E   T++ RAD A   AK  GRN
Sbjct: 727 EMLVT--PSIGIAMYPA-----DGEDFETLLQRADTATNRAKSDGRN 766


>gi|332533971|ref|ZP_08409823.1| sensory box/GGDEF/EAL domain protein [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036607|gb|EGI73073.1| sensory box/GGDEF/EAL domain protein [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 696

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 23/180 (12%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQIN 143
           Y S ++L   F++ +R+SQL               +      NEK +++F D+D FK+IN
Sbjct: 268 YDSLTLLPNRFLALDRLSQL---------------LIEAQRNNEKAAVLFLDLDDFKKIN 312

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++   + +L         VGRLGG+EF     G ++  AA+   +  K++
Sbjct: 313 DSLGHETGDKLLIESAQRLQEALRKDDTVGRLGGDEFIVLLRGITDHHAALKITE--KLL 370

Query: 204 ENSQINISSGPSIHI-TISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCFS 259
            N +         HI T S G+A   + E    ++ ++  AD A+Y AK  GRN    F+
Sbjct: 371 NNFRAPFKIEGREHILTASIGVA--IYPENGTTVADLLRNADTAMYQAKSYGRNTYSFFT 428


>gi|330962411|gb|EGH62671.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 351

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 1/127 (0%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  DID+FK IND  GH  GD V+  ++D +V    +     R GGEEF      +++
Sbjct: 223 SLILLDIDHFKLINDQHGHDTGDVVLQRVADIIVSSVRSSDMAARWGGEEFLVLMPDTTQ 282

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           ++A  +A+ +   I  S+   S    + +T +  +     +E     + RAD  LY+ KK
Sbjct: 283 EDAQRVADRIWTRI-GSESGWSRAQVMKVTATLSMVAIQREESFEIALSRADALLYLGKK 341

Query: 250 SGRNRVV 256
            GRNR++
Sbjct: 342 QGRNRLM 348


>gi|300864400|ref|ZP_07109272.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
 gi|300337626|emb|CBN54420.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
          Length = 666

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 14/183 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFK 140
            + ++L  +   +  L+ +D L+ + N   F   L    ++L       S++  DID FK
Sbjct: 481 QLYQQLEAANQELQNLASLDGLTKIANRRRFDEVLTQEWQRLIVEPIRLSLILCDIDCFK 540

Query: 141 QINDNFGHPVGD----KVIAFLSDQLVVVFGTPMF-VGRLGGEEFAAAALGSSEQEAAIL 195
             ND +GH  GD    +V   + D    +    ++ V R GGEEFA     +   +A  +
Sbjct: 541 AYNDTYGHQAGDSCLQQVATAIRDACREIPPERLYLVARYGGEEFAVILPNTGITDAIAV 600

Query: 196 ANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRN 253
           A ++R+ I+   I +  S  S +IT+S G+A     E +  T+I  AD+ALY AK  GR+
Sbjct: 601 AEEIRRRIQTLAIPHQQSFVSEYITLSLGVASADAAEALPETLIAAADKALYEAKSLGRD 660

Query: 254 RVV 256
           RVV
Sbjct: 661 RVV 663


>gi|296108043|ref|YP_003619744.1| hypothetical protein lpa_03512 [Legionella pneumophila 2300/99
           Alcoy]
 gi|295649945|gb|ADG25792.1| hypothetical protein lpa_03512 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 552

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 86/205 (41%), Gaps = 14/205 (6%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF--- 118
           E I  EN   ++ S+    +   IS  +L+E       +   S  D LSGL N       
Sbjct: 351 EQINKENNQEILASMMAEQIALGISNIMLRET------LRNQSLRDVLSGLYNRRYLNEV 404

Query: 119 ----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
               ++     +  L+++  DID+FKQ ND FGH  GD VI   ++ L  V        R
Sbjct: 405 LDRELNRCARKSLSLAVLMLDIDHFKQFNDKFGHEAGDMVIQAFANVLRQVTRKEDIACR 464

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPI 233
            GGEEF         + A   A  +   +    +         ITIS G+     H   +
Sbjct: 465 YGGEEFILIIPEIDLEAALQRAQSIHDAVSRIHLRYGGNALTQITISIGLTMYPAHGNDM 524

Query: 234 STIIYRADQALYVAKKSGRNRVVCF 258
             +I  AD ALY AK SGRN+ V +
Sbjct: 525 QDLITAADNALYEAKNSGRNKTVLY 549


>gi|253995502|ref|YP_003047566.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Methylotenera
           mobilis JLW8]
 gi|253982181|gb|ACT47039.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera mobilis JLW8]
          Length = 681

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 13/161 (8%)

Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N   F  SL          ++ ++++F D+D FK IND  GH +GDK++
Sbjct: 251 LAHYDTLTGLPNRLLFNESLHQAQTHANRTSDTIAVMFIDLDRFKNINDTLGHGIGDKLL 310

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGP 214
             + +++ +       V R+GG+EFA   +   E+ +AA++A    KII+  ++    G 
Sbjct: 311 QQVGNRISLCIRESDTVARMGGDEFAVVLVNVREESDAAVVAE---KIIDALRLPFMVGE 367

Query: 215 -SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
             + +  S GI   R  ++    ++ +AD A+Y AK+ GRN
Sbjct: 368 HEVFVGASIGITFYRPGQDDRDVLLEKADVAMYHAKERGRN 408


>gi|57233885|ref|YP_182092.1| GGDEF domain/HD domain-containing protein [Dehalococcoides
           ethenogenes 195]
 gi|57224333|gb|AAW39390.1| GGDEF domain/HD domain protein [Dehalococcoides ethenogenes 195]
          Length = 792

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 12/178 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y + +  +  D L+ L NH  F       I+    +    S++  D+D FK  ND +GH 
Sbjct: 410 YTQATIRANTDELTRLYNHRHFHERIEQEIARGSRFGNTFSLILLDLDLFKVYNDVYGHL 469

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+++  L   L     +     R GGEEFA    G+  ++A  +A  +RK +E     
Sbjct: 470 AGDQLLRRLGKILENSIRSIDMAFRYGGEEFAIMLPGTKIEDAYHVAERIRKNVETK--- 526

Query: 210 ISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            SS   + IT S G+A   +   +   II +AD ALY +K++GRNR    +++ +N  
Sbjct: 527 -SSFRDMPITASLGLANWPNDGIMKEEIIAKADAALYHSKETGRNRTSLPAELNSNPT 583


>gi|95928735|ref|ZP_01311481.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfuromonas acetoxidans DSM 684]
 gi|95135080|gb|EAT16733.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfuromonas acetoxidans DSM 684]
          Length = 1288

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 86/174 (49%), Gaps = 9/174 (5%)

Query: 96   SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
            S  ++  LS  D L+ L N S F + L          +   +++ FD+D+FK +ND+FGH
Sbjct: 850  SQEKLDYLSWHDPLTDLPNRSLFCTHLDQAVKHAERKHHSFAVLCFDLDHFKDVNDSFGH 909

Query: 149  PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQ 207
             VGD ++  ++D+L         + RLGG+EF       ++     ++A ++   ++   
Sbjct: 910  LVGDALLRKIADRLRSCLRESDMLARLGGDEFVLLLEDVADSHRVTMMAEEILHQLQQPI 969

Query: 208  INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                +   + +++S GIA    H      ++ RAD ALY AK+ GR R   +++
Sbjct: 970  CLTETDLEVQVSVSVGIAVYPEHGRDALELLQRADSALYRAKQHGRARFAYYNE 1023


>gi|307821996|ref|ZP_07652228.1| periplasmic/7TM domain sensor diguanylate cyclase [Methylobacter
           tundripaludum SV96]
 gi|307736562|gb|EFO07407.1| periplasmic/7TM domain sensor diguanylate cyclase [Methylobacter
           tundripaludum SV96]
          Length = 680

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 88/179 (49%), Gaps = 18/179 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL +   ++  LS  D L+G+ N   F + L           + L++   D+D+FK+ ND
Sbjct: 483 ELQLLNRKLEALSTTDELTGIANRRRFDAKLLSEWSRAARLGQPLALAVLDVDWFKKYND 542

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           ++GH  GD+ +  +++ L   +  T   V R GGEEF   A      + AI  N   KI 
Sbjct: 543 HYGHQKGDECLRIIAEVLSANICRTGDLVARYGGEEFVFIA---PTTDGAIALNMAWKIC 599

Query: 204 ENSQ----INISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256
           E  Q     +  SG    +T S G+A    ++ +S   +I  AD+ALY AKK GRN+ V
Sbjct: 600 EALQSLALPHEMSGFG-WVTASIGVAAIVPEQKLSPDMLIKAADEALYRAKKQGRNQAV 657


>gi|242239488|ref|YP_002987669.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Dickeya dadantii Ech703]
 gi|242131545|gb|ACS85847.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Dickeya dadantii Ech703]
          Length = 718

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 90/173 (52%), Gaps = 24/173 (13%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFG 147
           + LF+  +R       D L+GL N +   S+L      +  ++++  D+D FK IND+ G
Sbjct: 290 ERLFLQAHR-------DPLTGLANRTLLASTLDHVLKSDLAVAVLIIDLDGFKDINDSLG 342

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA----NDLRKI 202
           H  GD+++  ++ +L         V R+GG+EFA    G ++E+  A LA    ND+ + 
Sbjct: 343 HSSGDEILTSVAKRLQANARPEDLVARMGGDEFAMLLPGLNTEELVADLAERIINDISQA 402

Query: 203 --IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             I+N QINIS+   I ++ S G+  +        ++  AD ALY A+  GRN
Sbjct: 403 VQIDNQQINISASIGIVMSPSHGMTSQ-------DLLTSADLALYKAQSDGRN 448


>gi|256821584|ref|YP_003145547.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Kangiella koreensis DSM
           16069]
 gi|256795123|gb|ACV25779.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Kangiella koreensis DSM 16069]
          Length = 887

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 18/157 (11%)

Query: 107 DCLSGLLNHSA---FISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+ L N SA   +++S     +++S   I+F D+D FK IND+ GH  GD+++   + 
Sbjct: 469 DPLTHLKNRSALERYLTSWAKNKDQISNTYILFIDLDGFKPINDSLGHEFGDQILVETAQ 528

Query: 161 QLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +L      P  + R GG+EF A    L  S Q  A+    L ++ E+ +++      I +
Sbjct: 529 RLNSEIVEPNMLARFGGDEFVAVIQDLTDSHQVEALARKLLERVAESYKVD-----DIEV 583

Query: 219 TISAGI----AERCHKEPISTIIYRADQALYVAKKSG 251
           ++SA I    ++   K P+  +I RAD A+Y AKK G
Sbjct: 584 SLSAAIGITSSQESFKHPME-LIQRADIAMYEAKKRG 619


>gi|192359770|ref|YP_001982880.1| response regulator [Cellvibrio japonicus Ueda107]
 gi|190685935|gb|ACE83613.1| Response regulator [Cellvibrio japonicus Ueda107]
          Length = 514

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 11/168 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS------SLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGD 152
           +  LS++D L+ + N   F        +L   ++  +S +  D+D+FK  ND++GHP GD
Sbjct: 222 LEALSQLDSLTQIYNRRTFNDLAEQQWALAKRHQLPISALMIDVDHFKLFNDHYGHPAGD 281

Query: 153 KVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
             +  +S  +   +  +    GR GGEEF      +  Q A  +A  + + IE   +   
Sbjct: 282 SCLKKISQAIKSCLHRSADLFGRYGGEEFIVLLPETDTQGALHVAQSINQAIEALNLRHD 341

Query: 212 SGPSIH-ITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             PS H +T S G A   R     +  +I  AD+ALY  K+SGRNR +
Sbjct: 342 VSPSSHLVTASIGGATCVRTTGHSLEELIKSADRALYKVKRSGRNRAL 389


>gi|148360135|ref|YP_001251342.1| sensor histidine kinase [Legionella pneumophila str. Corby]
 gi|148281908|gb|ABQ55996.1| sensor histidine kinase [Legionella pneumophila str. Corby]
          Length = 565

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 86/205 (41%), Gaps = 14/205 (6%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF--- 118
           E I  EN   ++ S+    +   IS  +L+E       +   S  D LSGL N       
Sbjct: 364 EQINKENNQEILASMMAEQIALGISNIMLRET------LRNQSLRDVLSGLYNRRYLNEV 417

Query: 119 ----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
               ++     +  L+++  DID+FKQ ND FGH  GD VI   ++ L  V        R
Sbjct: 418 LDRELNRCARKSLSLAVLMLDIDHFKQFNDKFGHEAGDMVIQAFANVLRQVTRKEDIACR 477

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPI 233
            GGEEF         + A   A  +   +    +         ITIS G+     H   +
Sbjct: 478 YGGEEFILIIPEIDLEAALQRAQSIHDAVSRIHLRYGGNALTQITISIGLTMYPAHGNDM 537

Query: 234 STIIYRADQALYVAKKSGRNRVVCF 258
             +I  AD ALY AK SGRN+ V +
Sbjct: 538 QDLITAADNALYEAKNSGRNKTVLY 562


>gi|83310203|ref|YP_420467.1| signal transduction protein [Magnetospirillum magneticum AMB-1]
 gi|82945044|dbj|BAE49908.1| Predicted signal transduction protein [Magnetospirillum magneticum
           AMB-1]
          Length = 682

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 87/176 (49%), Gaps = 13/176 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
            +L E+      I QL+  D L+GL N           I+  G  N  ++++F DID FK
Sbjct: 217 QLLTEIDQRTEDIHQLANRDLLTGLPNRRLLEDRIGHAIALAGRQNRSIALLFADIDNFK 276

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            +ND  GH  GD ++  ++D++  +      V R GG+EF       +S  EAA +A   
Sbjct: 277 VVNDTLGHKQGDALLRIIADRIHDIMRGMDTVARWGGDEFVIVVESLNSAGEAASVAE-- 334

Query: 200 RKIIENSQINISSGPS-IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
            K+IE   + +  G + + + +S GI+        I+T+I  AD AL+ AK  GRN
Sbjct: 335 -KLIETIGVPVQLGSNLLRVGVSVGISMYPQDGADITTLIKNADMALFEAKGRGRN 389


>gi|13473613|ref|NP_105181.1| hypothetical protein mll4271 [Mesorhizobium loti MAFF303099]
 gi|14024363|dbj|BAB50967.1| mll4271 [Mesorhizobium loti MAFF303099]
          Length = 398

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 83/160 (51%), Gaps = 10/160 (6%)

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  D LSGLLN   F       +         +++V  D+D+FK +ND  GH  GD+VIA
Sbjct: 222 THTDPLSGLLNRRGFEERAAQLLRHCAMARFPVALVLADLDHFKALNDVHGHAAGDRVIA 281

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPS 215
             + +L    G     GR+GGEEFA     +    A + A  +R +     ++ + +G  
Sbjct: 282 DFAAKLRSAAGARGAAGRIGGEEFAVLLPLTDLAAARLFAEAVRTLYSAGGVDGLPAG-- 339

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +T S G+A R  +E +  ++ RAD+ALY AKK+GR+ V
Sbjct: 340 TKVTASFGVAARSGEEALEPLMRRADEALYKAKKNGRDSV 379


>gi|329906559|ref|ZP_08274414.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Oxalobacteraceae bacterium IMCC9480]
 gi|327547249|gb|EGF32098.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Oxalobacteraceae bacterium IMCC9480]
          Length = 258

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 11/167 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148
           S  RI  L+  D L+GL N   F+  L            ++ ++F D+D FK+IND  GH
Sbjct: 79  SDERIRFLAHHDDLTGLPNRMRFLQELSLALARAARSGHQVGLLFLDLDRFKEINDTLGH 138

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD V+  ++++L         V RLGG+EF   A   S  ++ +L+   RK+ E   +
Sbjct: 139 HVGDAVLREVANRLRANVREVDMVARLGGDEFVVMAEDFS--DSTVLSGIARKLTEQIAL 196

Query: 209 N-ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
             +      H+T S GI+      + I  +I  AD A+Y  K+ GRN
Sbjct: 197 PMVIDQQDCHLTASIGISTYPDDGDNIPALIRSADIAMYRVKEGGRN 243


>gi|253997107|ref|YP_003049171.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
 gi|253983786|gb|ACT48644.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
          Length = 575

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 97/190 (51%), Gaps = 17/190 (8%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128
           +T +L+      ++ ++L  +Y R+  L+  D ++GL N   F       I     +  K
Sbjct: 113 LTKALVHAQARHALNQQLVETYARLKYLAENDPMTGLSNRRYFEEKLRGEIKRAQRFESK 172

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           + ++F D+D FK IND+ GH VGD+++  ++++L+ +        RLGG+EFA       
Sbjct: 173 IGLLFLDVDNFKLINDSLGHDVGDQILQQIANRLLTLIRQGDIACRLGGDEFAIVVNDID 232

Query: 189 EQEA-AILANDLRKIIENSQINISSGPSIH-ITISAGIA---ERCHKEPISTIIYRADQA 243
           E+ +  +LA   ++I++     I    + H I+IS GI+   E  H      ++  AD A
Sbjct: 233 EETSLGLLA---QRILDCLHEPIVLAKTQHFISISIGISTYPECAH--TAEDMLKHADLA 287

Query: 244 LYVAKKSGRN 253
           +Y  K+ GRN
Sbjct: 288 MYHVKQHGRN 297


>gi|218513452|ref|ZP_03510292.1| diguanylate cyclase [Rhizobium etli 8C-3]
          Length = 167

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 11/160 (6%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           SR D L+GL N         ++ E      +++ FDID+FK+IND   H VGD V+  ++
Sbjct: 8   SRTDPLTGLGNRRELQLRCRNWVESGVTHAALLLFDIDHFKRINDILSHAVGDIVLRQVA 67

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN---SQINISSGPSI 216
             L  +        R+GGEEF     G++  EA   A  LR  +++   S+I+    P +
Sbjct: 68  GLLGGIGPAGSLAIRMGGEEFLLLLPGTTAGEAFADAERLRLRVQDHDWSEID----PRL 123

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +T S G+A+      +   ++ AD  LY AK +GRNR +
Sbjct: 124 EVTCSIGLADWSLTNRLEAALHIADANLYAAKNAGRNRCM 163


>gi|209516198|ref|ZP_03265056.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160]
 gi|209503309|gb|EEA03307.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160]
          Length = 696

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 99/196 (50%), Gaps = 14/196 (7%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYN-RISQLSRIDCLSGLLNHSAF-------IS 120
           L+L ++++T+ L    +  + L       N ++ +L+ +D L+GL N +         IS
Sbjct: 223 LTLAVLTVTLMLSRFDVRTTFLLGAMSKLNGQVVRLATLDALTGLPNRATLTERIERAIS 282

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                +   +++F D+D FK IND+ GH  GD V++  + +L+    +   V RLGG+EF
Sbjct: 283 VARRQHSSFAVLFMDLDGFKTINDSLGHSTGDAVLSAFARRLLQCVRSTDTVARLGGDEF 342

Query: 181 AAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTII 237
              A   +S  +AA LA+ +  +    Q   S    + +  S GIA   R   + + T++
Sbjct: 343 VVLAEHLASGNDAAELADGV--LDRMRQGTWSDEQPLQVMPSIGIALFPR-DGDTVDTLL 399

Query: 238 YRADQALYVAKKSGRN 253
             AD A+Y AK++GR 
Sbjct: 400 KHADAAMYEAKRAGRG 415


>gi|158334238|ref|YP_001515410.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158304479|gb|ABW26096.1| diguanylate cyclase (GGDEF) domain protein [Acaryochloris marina
           MBIC11017]
          Length = 556

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 14/179 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           L +L     ++ QL  +D L+ + N  +F          LG     L+++  D+D FK  
Sbjct: 372 LAQLEEENTQLKQLVNLDALTQVANRRSFDEFIQAKWQQLGEMQAPLAVILADVDCFKLY 431

Query: 143 NDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD+ +  ++  +          V R GGEEF      ++ + AA +A  +  
Sbjct: 432 NDTYGHQAGDQCLQQVAQAMQKCAQRASDLVARYGGEEFVVVLPLTTAESAAQMAETMLN 491

Query: 202 IIENSQI--NISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I+  +I  + S+  +  +T S G+A       ++P S +I  ADQALY AK  GR+RV
Sbjct: 492 CIKEKKISHDRSTVATKIVTASMGVASVIPTLDQDPTS-LIKAADQALYQAKALGRDRV 549


>gi|121588040|ref|ZP_01677790.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121547691|gb|EAX57785.1| GGDEF family protein [Vibrio cholerae 2740-80]
          Length = 429

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 8/132 (6%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+IND +GH  GD+++  ++  L         + R GGEEF       S +EA  
Sbjct: 299 DIDHFKKINDQYGHITGDRILQAVASCLRKNVRDGDTIIRFGGEEFLLLFQAHSNKEAWY 358

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + + LR+ +++      +  SI  T   G         +   I RAD ALY AK++GRN+
Sbjct: 359 MLDRLRQRVKDDHSLYGTTISIGFTFIDG--------SLPAAISRADTALYQAKEAGRNQ 410

Query: 255 VVCFSDIENNTC 266
           VV  S+ EN++ 
Sbjct: 411 VVADSEKENDSA 422


>gi|78486363|ref|YP_392288.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
 gi|78364649|gb|ABB42614.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
          Length = 665

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 18/193 (9%)

Query: 82  LGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
           L YI  S+++    L    N + + +R D LSGL N +         IS      ++ ++
Sbjct: 212 LEYIRSSMVQTFDRLDNEKNELYRQARTDNLSGLANRNHLNERINWLISEYSRTGQEFAV 271

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +F D+D FK +ND  GH VGD ++  +S  +  V      + R+GG+EF      +  Q 
Sbjct: 272 LFMDLDNFKTVNDMLGHEVGDNLLKNVSTIIQEVLRDYDIIARVGGDEFVIVL--NYYQS 329

Query: 192 AAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVA 247
              L + + +I++  S++++     + ++ S GI   C  +    IST++  AD A+Y A
Sbjct: 330 NFELTHVINRILDRISEVHMVDSHPVKVSASIGIV--CFPKDGDNISTLMKNADIAMYEA 387

Query: 248 KKSGRNRVVCFSD 260
           K SG+NR   F++
Sbjct: 388 KNSGKNRFKFFTE 400


>gi|254508127|ref|ZP_05120253.1| ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219548962|gb|EED25961.1| ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 509

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 9/156 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GLLN  AF   L    +     ++  FDID FK +ND+FGH  GD+++  +++ + 
Sbjct: 356 DSLTGLLNRRAFSEKLDELTKGDACFALAAFDIDKFKTLNDSFGHVAGDEMLIHVANTVA 415

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINISSGPSIHITIS 221
                   + R+GG+EF    + S   +   L+  L  I +   S  +      I  ++S
Sbjct: 416 ESLPEADLLYRMGGDEF---CILSKNTDPTALSEQLNAIGQRVASSYHQYDVHQIQCSLS 472

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            G A R   E    I+ +AD  LY +KK+GRNRV  
Sbjct: 473 IGAAVRT-TESAEDILKKADTQLYRSKKAGRNRVTV 507


>gi|126174071|ref|YP_001050220.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|125997276|gb|ABN61351.1| diguanylate cyclase [Shewanella baltica OS155]
          Length = 341

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 100/214 (46%), Gaps = 12/214 (5%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILK---ELFISYNRISQLSR---IDCLSGL 112
           + +E +L    SLV  S  I     + +G + K   E+     ++ Q  +    D L+G 
Sbjct: 128 FSVEQVLDLVRSLVKESDNIRSSTEFFTGQLQKAQTEIDALKKKLEQTEKDVLYDALTGC 187

Query: 113 LNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N  AF S     L       S++  DID+FK  ND +GH +GD+V+  ++ +L      
Sbjct: 188 FNRRAFDSDFAGMLAQAPLGTSLILADIDHFKVFNDTYGHQLGDQVLRAVAKRLQESCRD 247

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              + R GGEEF      S  + A  LA  +R+ +E   +          +I+ S G+A+
Sbjct: 248 GAKLYRFGGEEFVIIVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDERINNISASFGVAQ 307

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              K+    +I  AD+ LY AK+ GRNRV+  S+
Sbjct: 308 WQEKQTGMQLIEAADKLLYDAKRLGRNRVLPISN 341


>gi|146307178|ref|YP_001187643.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
 gi|145575379|gb|ABP84911.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
          Length = 1072

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 4/166 (2%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           Y  ++     D L+GL N  AF S+L    +   + + +   +D F  IN + G   GD 
Sbjct: 648 YREVAHARSHDELTGLHNRRAFESALAQSLASRSRHAFLMLHLDQFALINTHSGPHAGDA 707

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  +S+ L         + R+GG +FAA   G +E +AA LA  +R+ +E S+  +   
Sbjct: 708 CLGRVSELLRRWLPQASCLARVGGVDFAAVLPGCNEAQAADLAEQVRREVE-SEGFVWET 766

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               IT+S G+ E   +  ++ +      A   AK++GRNRV CFS
Sbjct: 767 RKHGITLSVGVVEAAQRHDVANLFCELQSACNAAKEAGRNRVHCFS 812


>gi|113955560|ref|YP_730719.1| GGDEF domain-containing protein [Synechococcus sp. CC9311]
 gi|113882911|gb|ABI47869.1| GGDEF domain protein [Synechococcus sp. CC9311]
          Length = 488

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 90/199 (45%), Gaps = 21/199 (10%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128
           + I +L   +SG +L  LF+S   ++ LS  D L  + N      SL  Y EK       
Sbjct: 280 LEIRMLRQILSG-LLNRLFLSCEALNDLSMTDPLCQIGNRR----SLDIYGEKAWKQAVR 334

Query: 129 ----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAA 183
               ++I+  D+D FKQ ND +GH  GD V+  ++     V   P+    R GGEEF   
Sbjct: 335 TVSPIAILMIDVDNFKQFNDIYGHSKGDDVLVSIAQCFPKVLRRPLDDCFRYGGEEFLIL 394

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG---IAERCHKEPISTIIYRA 240
               S +      + LR  +EN  I      +  +TIS G   +   C    +   I  A
Sbjct: 395 MYDVSAENFNHFCHKLRDSVENLSIEHRGVKTGRVTISCGGCYVFNPCSLS-LDDAIQHA 453

Query: 241 DQALYVAKKSGRNRVVCFS 259
           DQ LY AKK GRN+V  +S
Sbjct: 454 DQELYRAKKHGRNQVSIYS 472


>gi|74318652|ref|YP_316392.1| PAS/PAC sensor-containing diguanylate cyclase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74058147|gb|AAZ98587.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 843

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 55/166 (33%), Positives = 81/166 (48%), Gaps = 10/166 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSI--VFFDIDYFKQINDNFGHPVGD 152
           + +L+ +D L+G+ N       +G        ++L I  V  DID+FK  ND++GH  GD
Sbjct: 664 LEELTLLDPLTGVANRRFLERFVGREWMREARQRLPIAAVMVDIDHFKDYNDHYGHAQGD 723

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
             +  +S  L      P   + R GGEEF      S    A  +A  LR+ +E   +   
Sbjct: 724 ACLRTVSQTLRGALHRPADILVRYGGEEFIVLLPESDLAAAREIAERLRQAVEALALPHP 783

Query: 212 SGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + P    +TIS G+A  + H+     ++  AD ALY AKK GRNRV
Sbjct: 784 TSPIGDRVTISLGVAAVQAHEGEFDQLLIAADAALYRAKKKGRNRV 829


>gi|15641601|ref|NP_231233.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|147675021|ref|YP_001217141.1| GGDEF family protein [Vibrio cholerae O395]
 gi|227081746|ref|YP_002810297.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|229508462|ref|ZP_04397965.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229511466|ref|ZP_04400945.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229518606|ref|ZP_04408049.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229607869|ref|YP_002878517.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254848711|ref|ZP_05238061.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|298498324|ref|ZP_07008131.1| GGDEF family protein [Vibrio cholerae MAK 757]
 gi|9656103|gb|AAF94747.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|146316904|gb|ABQ21443.1| GGDEF family protein [Vibrio cholerae O395]
 gi|227009634|gb|ACP05846.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|227013503|gb|ACP09713.1| GGDEF family protein [Vibrio cholerae O395]
 gi|229343295|gb|EEO08270.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229351431|gb|EEO16372.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229354416|gb|EEO19339.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229370524|gb|ACQ60947.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254844416|gb|EET22830.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|297542657|gb|EFH78707.1| GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 429

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 8/132 (6%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+IND +GH  GD+++  ++  L         + R GGEEF       S +EA  
Sbjct: 299 DIDHFKKINDQYGHITGDRILQAVASCLRKNVRDGDTIIRFGGEEFLLLFQAHSNKEAWY 358

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + + LR+ +++      +  SI  T   G         +   I RAD ALY AK++GRN+
Sbjct: 359 MLDRLRQRVKDDHSLYGTTISIGFTFIDG--------SLPAAISRADTALYQAKEAGRNQ 410

Query: 255 VVCFSDIENNTC 266
           VV  S+ EN++ 
Sbjct: 411 VVADSEKENDSA 422


>gi|330891746|gb|EGH24407.1| GGDEF domain-containing protein [Pseudomonas syringae pv. mori str.
           301020]
          Length = 397

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 100/211 (47%), Gaps = 23/211 (10%)

Query: 68  NLSLVIISITISLLLGYI--SGSILKELFISYNRISQL-----SRIDCLSGLLNHSAFIS 120
           N  L + ++ + L+  Y     S +  LF    R+ Q+     +R D L+ L N      
Sbjct: 191 NAVLFVSTVALLLMASYFLERASRMSYLFALRGRLLQVQLMEFARTDGLTRLFNRRYQDE 250

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            + S  E+       ++I+  DID+FK  NDN+GHP GD  +  L  ++         V 
Sbjct: 251 VMTSVWERARKTPADVAIILLDIDHFKSYNDNYGHPQGDTCLKLLCQKIQQSAHENGAVA 310

Query: 174 -RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKE 231
            R GGEE      G + Q A  +A+ L+  +   ++ +   G S  +T+S G+A  C   
Sbjct: 311 FRFGGEEVLVLMNGDAGQ-AREMADVLQAAVAALKLPHPVLGESAFVTVSLGVA--CATA 367

Query: 232 PIST---IIYRADQALYVAKKSGRNRVVCFS 259
           P +    +I  AD ALY AK++GRN  VCF+
Sbjct: 368 PQTNADHLISAADNALYAAKRAGRN-CVCFA 397


>gi|167750736|ref|ZP_02422863.1| hypothetical protein EUBSIR_01714 [Eubacterium siraeum DSM 15702]
 gi|167656415|gb|EDS00545.1| hypothetical protein EUBSIR_01714 [Eubacterium siraeum DSM 15702]
          Length = 670

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 7/161 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++S+ +  D LS L N S F   L S  E     K++++F D+D FK IND FGH VGD+
Sbjct: 490 QLSERASYDFLSQLYNRSTFERELKSEIERSAHSKVAVLFIDVDDFKFINDRFGHSVGDE 549

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISS 212
           VI +++  +        F GR GG+EF        + +E   L+ DL   +     +  +
Sbjct: 550 VIKYVAGCIKQRVKGSGFAGRFGGDEFVLCITDPKQIEEIESLSLDLIDELYEGYHSELA 609

Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252
             SI++  S GIA    H +  + ++  AD+A+Y  KK+G+
Sbjct: 610 NVSINVKASIGIAFYPEHGDDSNKVVAAADEAMYFVKKNGK 650


>gi|152982609|ref|YP_001351719.1| hypothetical protein mma_0029 [Janthinobacterium sp. Marseille]
 gi|151282686|gb|ABR91096.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 313

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 82/167 (49%), Gaps = 11/167 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPV 150
             +  LS  D L+G+ N   F S L      + N K  LSI+  DIDYFKQ ND++GH  
Sbjct: 141 KELETLSFKDGLTGVANRRMFDSVLELEWANAMNSKRPLSIILLDIDYFKQYNDHYGHIQ 200

Query: 151 GDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI- 208
           GD  +  ++  L         F GR GGEEF      ++E+ A  +A   R +I   QI 
Sbjct: 201 GDHCLKQVAKTLNNAAIRQRDFFGRFGGEEFILILPETNEKSALTVAERCRMLIFKEQIP 260

Query: 209 NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRN 253
           +  S  S  +TIS G+      + +     I  AD+ LY+AK+ GRN
Sbjct: 261 HEKSAVSQLLTISLGVHTVIPSYGDEALKFIEEADRRLYLAKQKGRN 307


>gi|89894075|ref|YP_517562.1| hypothetical protein DSY1329 [Desulfitobacterium hafniense Y51]
 gi|89333523|dbj|BAE83118.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 320

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 10/166 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  L  +D  +G +N  A I+SL +     E L++   DID FK +ND +GH  GD+V+ 
Sbjct: 151 LKNLLSLDAATGAMNKYALINSLKNLTTGKEGLTVAMIDIDDFKLVNDRYGHLTGDRVLN 210

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
                          VGR GGEEF    L   +  + ++   L++I  + +    +    
Sbjct: 211 LFCSVAFTNTRKQDIVGRFGGEEF---MLIFPDMVSRLVIKALQRISTSFRTACMNELGF 267

Query: 217 HITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRVVCF 258
             T S G+AE   K+     I  II  AD+ LY +K +G+NRV  F
Sbjct: 268 SPTFSVGVAEFSTKKMAGMTIDAIIAEADENLYASKNAGKNRVTAF 313


>gi|307721951|ref|YP_003893091.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica
           DSM 16294]
 gi|306980044|gb|ADN10079.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica
           DSM 16294]
          Length = 619

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 88/176 (50%), Gaps = 11/176 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           +L+   +   +LS  D L+ + N   F       ++      E       D+D+FK  ND
Sbjct: 439 DLYKLRHEYEELSIKDALTSIYNRRYFNTIFPRELNRAKRAQESFCFAIMDVDHFKLYND 498

Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           N+GH  GD+V+  ++ ++  +   +  F  RLGGEEF       +++E      ++ K +
Sbjct: 499 NYGHDGGDEVLKKITAKIEELTQRSNEFFFRLGGEEFGFICSALTKEEVLKNIENMCKAV 558

Query: 204 ENSQI-NISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E+ +I ++ + P   I+IS GI  +    K  +  I   AD+ALY AK+ GRNRVV
Sbjct: 559 EDLEIEHLYNKPYGVISISVGICFSSDVSKSDVKNIYKNADEALYEAKEKGRNRVV 614


>gi|291558194|emb|CBL35311.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain [Eubacterium
           siraeum V10Sc8a]
          Length = 649

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 7/161 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++S+ +  D LS L N S F   L S  E     K++++F D+D FK IND FGH VGD+
Sbjct: 469 QLSERASYDFLSQLYNRSTFERELKSEIERSAHAKVAVLFIDVDDFKFINDRFGHSVGDE 528

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISS 212
           VI +++  +        F GR GG+EF        + +E   L+ DL   +     +  +
Sbjct: 529 VIKYVAGCIKQRVKGSGFAGRFGGDEFVLCITDPKQIEEIESLSLDLIDELYEGYHSELA 588

Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252
             SI++  S GIA    H +  + ++  AD+A+Y  KK+G+
Sbjct: 589 NVSINVKASIGIAFYPEHGDDSNKVVAAADEAMYFVKKNGK 629


>gi|260777452|ref|ZP_05886346.1| hypothetical protein VIC_002846 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607118|gb|EEX33392.1| hypothetical protein VIC_002846 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 535

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 15/162 (9%)

Query: 107 DCLSGLLNHSAFISS---LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ L N    I +   L   N+   ++  DI  FKQ+ND  GH  GD+++  +  ++ 
Sbjct: 108 DSLTALPNRKHCIETIELLIESNKPFDLMLLDIVNFKQVNDGMGHFCGDQLLIQIGQRIS 167

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN----DLRKIIENSQINISSGPSIHIT 219
            +     F+ R+GG+EF    L S+E  A  LA     +LRK        +S+G  I   
Sbjct: 168 SLLKKEDFIARIGGDEFVIICLDSNEASAKALAKEIDVELRKPFAIDGFELSTGAVI--- 224

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              G++E   H +    +I+ AD A+Y AKKSG + V C+ D
Sbjct: 225 ---GLSEFPRHGDDAEQVIHAADVAMYWAKKSG-HLVACYDD 262


>gi|229033982|ref|ZP_04188934.1| Sensory box protein [Bacillus cereus AH1271]
 gi|228728335|gb|EEL79359.1| Sensory box protein [Bacillus cereus AH1271]
          Length = 450

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 17/179 (9%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 11  LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQTNANDVAVMFLDLDRFKKINDR 70

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIE 204
            GH VGD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  I+ 
Sbjct: 71  LGHDVGDLLLIEVAKRLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILTILN 130

Query: 205 N----SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                 +  +S  PSI I +        +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 131 KPFFIKEEELSITPSIGIAMYPD-----YGTDVTELMKNADMAMYRAKANGKNRFVFFS 184


>gi|26991354|ref|NP_746779.1| GGDEF domain-containing protein [Pseudomonas putida KT2440]
 gi|24986417|gb|AAN70243.1|AE016663_11 GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 423

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 16/158 (10%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N + F       + +     + L+++F D D+FKQIND  GH VGD+V+  ++
Sbjct: 251 DSLTGLPNRAFFEGRLSRSVRNAARQQDHLAVLFLDSDHFKQINDTLGHAVGDEVLISVA 310

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQ--INISSGPSI 216
           +++         V RLGG+EFA       + ++A  +A    KI+ + +  + + SG S+
Sbjct: 311 ERVRAQLREQDLVARLGGDEFAVLLTPLHTRKDAEHIAE---KIVASMELPVQLDSGRSV 367

Query: 217 HITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGR 252
             ++S GIA       +P S ++  AD A+Y AK+  R
Sbjct: 368 STSLSVGIAYYPDDGADPAS-LLNAADAAMYQAKRERR 404


>gi|115524367|ref|YP_781278.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
 gi|115518314|gb|ABJ06298.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
          Length = 587

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 7/169 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +L+ ID L+ + N   F       ++   S      ++  D+D FK +ND FGH  
Sbjct: 404 EKLRRLANIDLLTEIPNRRGFTYVFEQWLAKPASNGRAAGLLLIDLDDFKDVNDAFGHQA 463

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+++   + +L  +        R GG+EF    +         L   +   I  + I  
Sbjct: 464 GDRLLCETARRLSALLSDRDSCARWGGDEFVVLVVDCDHDGLRALCARMVGAINAAPIRC 523

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             G  I +T+S G         I      AD ALY AK++GRNR   F 
Sbjct: 524 DDGQEIALTVSIGACRVGSGSSIDLAFAEADAALYTAKRAGRNRFALFD 572


>gi|152965987|ref|YP_001361771.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151360504|gb|ABS03507.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 640

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 90/198 (45%), Gaps = 33/198 (16%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL------------------GSYNEKLSIVFFDID 137
           +  R++  +  D L+GL N  AF + L                  G    ++ +VF D+D
Sbjct: 185 AAGRMAWHASRDPLTGLFNRGAFFAQLQRMIDTVPGDLESRGPGTGPAQVRVGVVFVDLD 244

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL--GSSEQEA--- 192
             K +ND  GH  GD +I  ++ +L         V RLGG+EFA A L     EQEA   
Sbjct: 245 RLKTVNDTLGHDAGDALIRSVAARLRTAARPRDVVARLGGDEFAVACLVHARDEQEATRT 304

Query: 193 --AILANDLRKI-IENSQINISSGPSIHITISAGIAERCH-KEPI--STIIYRADQALYV 246
             AI    L  +   +++++    PS   + S G A      +P+   T++  AD A+Y 
Sbjct: 305 LHAIATRHLHAVRTPDARLD----PSARSSASVGAALSVPLPQPVGADTLLREADTAMYA 360

Query: 247 AKKSGRNRVVCFSDIENN 264
           AK++G +RV     + ++
Sbjct: 361 AKQAGGDRVSTTGTVGDD 378


>gi|77543222|gb|ABA87032.1| putative response regulator [Vibrio cholerae]
 gi|259156480|gb|ACV96424.1| response regulator receiver protein [Vibrio cholerae Mex1]
          Length = 309

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 103 LSRIDCLSGLLNHSAFIS----SLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGDKVI 155
           L+ +D L+G+ N   F +     L  +  KLS   ++  DIDYFK+ ND FGH  GD  +
Sbjct: 144 LAYLDGLTGIYNRRYFDNVLSIQLAQHRRKLSPLAVLMIDIDYFKKYNDTFGHLAGDDAL 203

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L  +      V R GGEEF      +    A  +A  +   +    I     P+
Sbjct: 204 RKVASALKHIGRQADMVARYGGEEFVVLLADTDINGAVTVAKKMLHHVLELDIAHPQTPA 263

Query: 216 IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
             ++IS GIA     K   S II  ADQ LY++K+ GRN
Sbjct: 264 TKLSISVGIAVADEAKGYDSNIIELADQQLYLSKQRGRN 302


>gi|21242098|ref|NP_641680.1| sensor histidine kinase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21107507|gb|AAM36216.1| sensor histidine kinase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 569

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      SL             L ++  D+D+FKQ ND+ GH  GD ++A + 
Sbjct: 402 DALTGLYNRRYLEESLSHELARCARRGLPLPVLMLDVDHFKQFNDSQGHAGGDLLLAAVG 461

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L+          R GGEEF      +  +EA  +A  +R  I    ++  +     +T
Sbjct: 462 ELLLTRLRAEDVACRYGGEEFTVLLPEADGEEAMRVAEQIRGYIAALAVSDGARALPKVT 521

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S G+A      E  +++I +AD ALY AK +GRNRV
Sbjct: 522 ASIGVASFPVDGEQGASLIQKADAALYRAKHAGRNRV 558


>gi|121587851|ref|ZP_01677608.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae 2740-80]
 gi|147673182|ref|YP_001216147.1| PAS/GGDEF domain-containing protein [Vibrio cholerae O395]
 gi|153215852|ref|ZP_01950184.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae 1587]
 gi|153802006|ref|ZP_01956592.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae MZO-3]
 gi|153818697|ref|ZP_01971364.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae NCTC 8457]
 gi|153822535|ref|ZP_01975202.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae B33]
 gi|153826524|ref|ZP_01979191.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae MZO-2]
 gi|153829181|ref|ZP_01981848.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae 623-39]
 gi|227080834|ref|YP_002809385.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           M66-2]
 gi|229505725|ref|ZP_04395235.1| hypothetical protein VCF_000936 [Vibrio cholerae BX 330286]
 gi|229509242|ref|ZP_04398727.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae B33]
 gi|229519550|ref|ZP_04408993.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae RC9]
 gi|229530459|ref|ZP_04419847.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           12129(1)]
 gi|229608836|ref|YP_002879484.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           MJ-1236]
 gi|254226539|ref|ZP_04920122.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae V51]
 gi|254291892|ref|ZP_04962674.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae AM-19226]
 gi|254850887|ref|ZP_05240237.1| PAS domain S-box/GGDEF domain-containing protein [Vibrio cholerae
           MO10]
 gi|255744130|ref|ZP_05418083.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholera CIRS
           101]
 gi|262156106|ref|ZP_06029225.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae INDRE
           91/1]
 gi|262169951|ref|ZP_06037641.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae RC27]
 gi|262191207|ref|ZP_06049406.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae CT
           5369-93]
 gi|297580779|ref|ZP_06942705.1| PAS domain S-box/GGDEF domain-containing protein [Vibrio cholerae
           RC385]
 gi|121547887|gb|EAX57971.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae 2740-80]
 gi|124114569|gb|EAY33389.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae 1587]
 gi|124122465|gb|EAY41208.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae MZO-3]
 gi|125620943|gb|EAZ49294.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae V51]
 gi|126510777|gb|EAZ73371.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae NCTC 8457]
 gi|126519953|gb|EAZ77176.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae B33]
 gi|146315065|gb|ABQ19604.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae O395]
 gi|148875370|gb|EDL73505.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae 623-39]
 gi|149739704|gb|EDM53911.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae MZO-2]
 gi|150422178|gb|EDN14143.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae AM-19226]
 gi|227008722|gb|ACP04934.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           M66-2]
 gi|227012478|gb|ACP08688.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae O395]
 gi|229332232|gb|EEN97720.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           12129(1)]
 gi|229344239|gb|EEO09214.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae RC9]
 gi|229353814|gb|EEO18750.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae B33]
 gi|229357948|gb|EEO22865.1| hypothetical protein VCF_000936 [Vibrio cholerae BX 330286]
 gi|229371491|gb|ACQ61914.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           MJ-1236]
 gi|254846592|gb|EET25006.1| PAS domain S-box/GGDEF domain-containing protein [Vibrio cholerae
           MO10]
 gi|255738070|gb|EET93462.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholera CIRS
           101]
 gi|262021685|gb|EEY40396.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae RC27]
 gi|262030142|gb|EEY48787.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae INDRE
           91/1]
 gi|262032909|gb|EEY51448.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae CT
           5369-93]
 gi|297535195|gb|EFH74030.1| PAS domain S-box/GGDEF domain-containing protein [Vibrio cholerae
           RC385]
          Length = 684

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGS--YNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+GL N   F   L     NE  L +++ DID FK IND+ GH +GDKVI  ++ 
Sbjct: 256 AHIDSLTGLYNRHGFTKRLEQCIQNETPLVMLYLDIDNFKNINDSLGHHIGDKVIKEVAA 315

Query: 161 QLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           +L  +      +G LGG+EF          + A +LA+ +  +I N   ++    S  + 
Sbjct: 316 RLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLI-NQPFDLHHF-SKRLA 373

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +           ++  AD A+Y AK+ GRNR++ F+D  N   
Sbjct: 374 CSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEA 421


>gi|254712761|ref|ZP_05174572.1| diguanylate cyclase [Brucella ceti M644/93/1]
 gi|254715830|ref|ZP_05177641.1| diguanylate cyclase [Brucella ceti M13/05/1]
 gi|261217591|ref|ZP_05931872.1| diguanylate cyclase [Brucella ceti M13/05/1]
 gi|261320468|ref|ZP_05959665.1| diguanylate cyclase [Brucella ceti M644/93/1]
 gi|260922680|gb|EEX89248.1| diguanylate cyclase [Brucella ceti M13/05/1]
 gi|261293158|gb|EEX96654.1| diguanylate cyclase [Brucella ceti M644/93/1]
          Length = 389

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 9/164 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF--ISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGD 152
           N + +    D L+GLLN       + L  +  +     ++  DID+FK IND +GHPVGD
Sbjct: 210 NELQRERDSDPLTGLLNRRGLERQADLRLHTPQCLSYGVIIADIDHFKAINDVYGHPVGD 269

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-IS 211
           +V+   +  L         VGR+GGEEF     G++E E   L N L  ++     + + 
Sbjct: 270 QVLVEFARILSSASKDHAIVGRVGGEEFVLLVSGTAE-ECEALGNRLCGLVARHAFSKLP 328

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +G    +T S GIA     E +     RAD AL   K  GRNRV
Sbjct: 329 AGQK--VTSSFGIAMVRSGETLWETAARADLALMRVKNLGRNRV 370


>gi|229523054|ref|ZP_04412466.1| GGDEF domain protein [Vibrio cholerae TM 11079-80]
 gi|229339904|gb|EEO04914.1| GGDEF domain protein [Vibrio cholerae TM 11079-80]
          Length = 412

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 23/168 (13%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+ +    A    L     K ++   D+D+FK+ ND +GH  GD V+  ++ +L  + 
Sbjct: 241 DPLTQIPGRQALDQDLKHIGRKFTLAMLDVDHFKKFNDTYGHDTGDDVLKLVASRLREIN 300

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSIH------ 217
           G    V R GGEEF+    G   +E       LR+ IE+ ++   + +  P  H      
Sbjct: 301 GKAR-VYRYGGEEFSIIYKGKLAKEVLPFIEALRQDIESYELVIRDTNQRPKSHAEGAKK 359

Query: 218 -----------ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
                      ITIS G+ +   ++ PI   +  AD ALY AK++GRN
Sbjct: 360 RSRKSNSDIVTITISIGVCDSELYRHPIEA-LKAADGALYKAKQAGRN 406


>gi|196041007|ref|ZP_03108304.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99]
 gi|196028175|gb|EDX66785.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99]
          Length = 735

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 15/178 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144
           L+    ++  L+  D L+GL N   F   L         S N+ ++++F D+D FK+IND
Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 354

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
             GH +GD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  I+
Sbjct: 355 RLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 414

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            N    I     + IT S GIA    C    ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 415 -NKPFFIKD-EELSITPSIGIAMYPDCGTN-VTELMKNADMAMYRAKANGKNRFVFFS 469


>gi|114564545|ref|YP_752059.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
 gi|114335838|gb|ABI73220.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
          Length = 829

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 22/181 (12%)

Query: 99  RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++S L+  D L+ L N        S   S+  SY  K + +  DID+FK +ND+ GH  G
Sbjct: 388 KMSHLANHDQLTDLPNRILLQDRLSVACSTARSYGTKAAALLIDIDHFKFLNDSLGHQYG 447

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILANDLRK--IIE 204
           D++I  ++ +L  +      + RLGG+EF        ++ +S Q A+ L   + +  +++
Sbjct: 448 DELICMMARRLRSLIPASYTLARLGGDEFVILMSETRSVEASSQLASTLVEAMHEPFVLD 507

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS-DIEN 263
           N + N+    SI I +S    +    E    ++  AD A+Y AK+ GRNR   FS D+E+
Sbjct: 508 NQKFNV----SISIGVSVFPNDAVDAE---ELMRHADVAMYRAKQEGRNRFCFFSHDLES 560

Query: 264 N 264
           +
Sbjct: 561 S 561


>gi|288923605|ref|ZP_06417714.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EUN1f]
 gi|288345042|gb|EFC79462.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EUN1f]
          Length = 557

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 79/166 (47%), Gaps = 4/166 (2%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--KLSIVFFDIDYFKQINDNFGHPVG 151
           F +   I   S  D L+GL N S  I  L    E  +  +VF D+D FK +ND  GH  G
Sbjct: 385 FATEREIRHRSTHDALTGLPNRSRLIDRLTRALEQHRTGVVFVDLDGFKTVNDTHGHQAG 444

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  ++ +L         V RL G+EF A      E  AA+     R +   ++  + 
Sbjct: 445 DQLLREIAHRLQAAVRPGDLVARLAGDEF-AVLCERVESPAAVQRLGQRLLAAINEPVVL 503

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  ++HI+ SAG+A  R        ++  +D A+Y AK+ G  R V
Sbjct: 504 AEATVHISASAGVAISRAELSDPDRLLNASDIAMYAAKRGGAGRCV 549


>gi|217970674|ref|YP_002355908.1| diguanylate cyclase [Thauera sp. MZ1T]
 gi|217508001|gb|ACK55012.1| diguanylate cyclase [Thauera sp. MZ1T]
          Length = 563

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 11/164 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+RID L+ L N       L +          +  +++ D+D+FK+IND  GH  GD
Sbjct: 400 LHRLARIDPLTNLTNRRGMSEMLEAEIIRAERQGSRFGLLWLDVDHFKEINDRRGHGAGD 459

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  L+  L           R GG+EF              +A+ +R  IE+   + + 
Sbjct: 460 EALTRLARVLEGCLRPYDRAARWGGDEFLVLLSPCDAATLEAIAHRVRADIEHG--SAAC 517

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  + +TI A +AE    E +  ++  AD ALY AK +GRN+VV
Sbjct: 518 GERVTVTIGACLAE--PGETLGVVLQHADDALYRAKDAGRNQVV 559


>gi|254502187|ref|ZP_05114338.1| hypothetical protein SADFL11_2225 [Labrenzia alexandrii DFL-11]
 gi|222438258|gb|EEE44937.1| hypothetical protein SADFL11_2225 [Labrenzia alexandrii DFL-11]
          Length = 1020

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 12/170 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  L+R D L+GL N      ++         +   L+I F D+D FK +ND +GH  G
Sbjct: 571 QLEHLARYDRLTGLPNRVLLADNMQQAMARARRHGHTLAIAFIDLDGFKAVNDTYGHAAG 630

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  ++ +L  V  T   + R+GG+EF A      ++++ +  + L +I++ +     
Sbjct: 631 DELLVSVAHRLTKVLRTEDTLARIGGDEFVAIITDLPDEKSCV--STLNRILDAASKEFK 688

Query: 212 SGPSI-HITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCF 258
            G +   ++ S G+      E I    +  +ADQA+Y AK SGRN+   F
Sbjct: 689 LGAATASVSASIGVTFYPQTEEIDGDQLERQADQAMYEAKISGRNQYKFF 738


>gi|167622425|ref|YP_001672719.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella halifaxensis HAW-EB4]
 gi|167352447|gb|ABZ75060.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella halifaxensis HAW-EB4]
          Length = 855

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 92/165 (55%), Gaps = 13/165 (7%)

Query: 101 SQLSR---IDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
            QL R   +D ++GLLN +AF   L  Y +    +++V+FD++ FK IND+ GH  GDK+
Sbjct: 419 QQLQRQAYLDPVTGLLNRAAFEERLVGYAQSSQFIAVVYFDLEQFKLINDSCGHNAGDKM 478

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINISS 212
           ++ ++  +     + M +GR+GG+EF      SS   A  +A  ++KII +   Q    +
Sbjct: 479 LSKVAKAIESSLSSNMLLGRIGGDEFGLIIKDSS---ALAVAKLIKKIIASVGCQSIEHN 535

Query: 213 GPSIHITISAGIA-ERCHKEPIS-TIIYRADQALYVAKKSGRNRV 255
             S  + +SAG+A  R +++  +  ++  AD A   AK+ G N+V
Sbjct: 536 DTSYRVGLSAGVALARFNQQTDALELLKDADIACLAAKRKGSNQV 580


>gi|152973525|ref|YP_001338576.1| hypothetical protein KPN_pKPN3p05967 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|329996377|ref|ZP_08302450.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
 gi|150958317|gb|ABR80346.1| Hypothetical protein KPN_pKPN3p05967 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|328539417|gb|EGF65428.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
          Length = 318

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 13/164 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI   +  D L+G+ N  +F       +       +   ++  D+D FK INDNFGH  G
Sbjct: 158 RIINEATTDPLTGICNRRSFALMTDESLRKAKKKKKTFCVLIIDLDNFKPINDNFGHSEG 217

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           ++V+   +D L  +  +   V RLGG+EF      S+ +EA    + LR  I  +  N++
Sbjct: 218 NEVLCNFADMLEDLSSSKSVVARLGGDEFGVLLPESTYKEAEEFLHKLRAGI--TSYNLN 275

Query: 212 SGPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGR 252
           S    +I  SAGI    E+ H E  S I+  AD+ +Y  KK  R
Sbjct: 276 SQKKYNIDFSAGIIEYDEKIHTE-CSAIMQDADERMYEIKKGKR 318


>gi|153824978|ref|ZP_01977645.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|149741490|gb|EDM55520.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
          Length = 693

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 85/148 (57%), Gaps = 8/148 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGS-YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +S  D L+ L N  A  +      + +LS+V+ D++ FK IND +GH VGDKV+  L+ +
Sbjct: 532 ISHTDNLTKLRNRRALYNRYRRGLSPRLSLVYLDVNTFKSINDQYGHEVGDKVLKQLAQR 591

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +  V+    +  R+GG+EF      SS+Q   ++A   R +  +++ ++    S  ++++
Sbjct: 592 IEAVWRGRSY--RIGGDEFILIGECSSKQLEHVVAQCERFMFVDAERDV----SFEVSVA 645

Query: 222 AGIAE-RCHKEPISTIIYRADQALYVAK 248
            GIA+ R   E ++ ++++AD A+Y AK
Sbjct: 646 IGIAKNRERTESLNEVMHQADIAMYRAK 673


>gi|83643269|ref|YP_431704.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631312|gb|ABC27279.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 462

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 91/177 (51%), Gaps = 9/177 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVF----FDIDYFKQIND 144
           EL  +  ++ +++  D L+ + N   FI   + L  +  +  +VF     DID FK +ND
Sbjct: 286 ELQKANAKLEKMAFFDPLTNIPNRRYFIDQTNKLMKFCNRRGLVFALGLIDIDNFKILND 345

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           ++GH  GD V+  L+      F +   + R GGEEFA A   ++E +A  +   L   I 
Sbjct: 346 SYGHDGGDIVLKELARYFYGFFRSDDAICRYGGEEFAFAMALNNESDADKVTLRLLMGIR 405

Query: 205 NSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  I I+S   + IT S G+   +  H   +  II +AD+ALY +K+ G+N+V  + 
Sbjct: 406 DLTIQINSDVVLSITTSIGVKLVDASHHLDLKDIINQADRALYQSKREGKNKVTIYQ 462


>gi|121728390|ref|ZP_01681418.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae V52]
 gi|121629324|gb|EAX61756.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae V52]
          Length = 684

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGS--YNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+GL N   F   L     NE  L +++ DID FK IND+ GH +GDKVI  ++ 
Sbjct: 256 AHIDSLTGLYNRHGFTKRLEQCIQNETPLVMLYLDIDNFKNINDSLGHHIGDKVIKEVAA 315

Query: 161 QLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           +L  +      +G LGG+EF          + A +LA+ +  +I N   ++    S  + 
Sbjct: 316 RLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLI-NQPFDLHHF-SKRLA 373

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +           ++  AD A+Y AK+ GRNR++ F+D  N   
Sbjct: 374 CSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEA 421


>gi|325920560|ref|ZP_08182482.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           gardneri ATCC 19865]
 gi|325548953|gb|EGD19885.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           gardneri ATCC 19865]
          Length = 996

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 81/159 (50%), Gaps = 14/159 (8%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN S  + ++    +        L++V  D+D+FK +ND  GH VGD V+A + 
Sbjct: 832 DALTGLLNRSGVLEAMAEELQACAHGAHPLAVVLIDLDHFKLVNDEHGHLVGDAVLAKVG 891

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSI 216
            +L         VGR GGEE      G S+       + LR I E   +    + +   +
Sbjct: 892 ARLTACLRDSDRVGRYGGEELLLLLPGMSQHS----QHRLRAIHEKLSVAPYQVGAARPL 947

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +T S G+A     +  +T++ RAD+ALY AK+ GRNR+
Sbjct: 948 PVTCSVGVAWFRIGDTAATLLARADEALYRAKRYGRNRI 986


>gi|307721383|ref|YP_003892523.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica
           DSM 16294]
 gi|306979476|gb|ADN09511.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica
           DSM 16294]
          Length = 620

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 12/167 (7%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N    +  L   N K        + +F D+D FK +ND +GH +GD+++  +S
Sbjct: 454 DFLTGLFNRKLLLQRLHEENSKALRHNFIHAFLFIDLDNFKSVNDTYGHHIGDELLIQVS 513

Query: 160 DQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILA-NDLRKIIEN-SQINISSGPS 215
            ++  +      + R+ G+EFA     + +S++ A   A    + II+  SQ  +  G  
Sbjct: 514 QRMKSLLREEDILARMSGDEFAVILVNIANSKEAAKKYAEKKCQSIIDALSQAFVIEGNE 573

Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           I+I  S GI      K  I  II  AD+A+YV+KK G+N    + +I
Sbjct: 574 IYIGASIGIKIFPDEKNNIEDIINDADKAMYVSKKHGKNSCSLYCEI 620


>gi|83591425|ref|YP_425177.1| response regulator receiver modulated diguanylate cyclase
           [Rhodospirillum rubrum ATCC 11170]
 gi|83574339|gb|ABC20890.1| response regulator receiver modulated diguanylate cyclase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 453

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 11/163 (6%)

Query: 100 ISQLSRIDCLSGLLNHS--------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++ ++ID L+GL N          A  ++L      + +   D D+FK+IND FGH VG
Sbjct: 269 LARSAQIDPLTGLPNRRYLFDVASRALAATLRVGGHPV-VAMIDADHFKEINDRFGHDVG 327

Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D+V+  L+  +   V      + R GGEEF       S ++A    + LR  +  S +++
Sbjct: 328 DQVLEALARVMDDHVQRKSDVLARFGGEEFCVFVSDMSPEQAFTFFDGLRAAVAQSPLSV 387

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
                + +TIS G++  C    + T+I+ AD+ LY AK +GR+
Sbjct: 388 PGLDDLSLTISIGVST-CAAPDLRTMIHSADRLLYDAKAAGRD 429


>gi|229520944|ref|ZP_04410366.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae TM
           11079-80]
 gi|229342177|gb|EEO07173.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae TM
           11079-80]
          Length = 684

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGS--YNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+GL N   F   L     NE  L +++ DID FK IND+ GH +GDKVI  ++ 
Sbjct: 256 AHIDSLTGLYNRHGFTKRLEQCIQNETPLVMLYLDIDNFKNINDSLGHHIGDKVIKEVAA 315

Query: 161 QLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           +L  +      +G LGG+EF          + A +LA+ +  +I N   ++    S  + 
Sbjct: 316 RLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLI-NQPFDLHHF-SKRLA 373

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +           ++  AD A+Y AK+ GRNR++ F+D  N   
Sbjct: 374 CSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEA 421


>gi|229525306|ref|ZP_04414711.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae bv.
           albensis VL426]
 gi|229338887|gb|EEO03904.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae bv.
           albensis VL426]
          Length = 684

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGS--YNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+GL N   F   L     NE  L +++ DID FK IND+ GH +GDKVI  ++ 
Sbjct: 256 AHIDSLTGLYNRHGFTKRLEQCIQNETPLVMLYLDIDNFKNINDSLGHHIGDKVIKEVAA 315

Query: 161 QLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           +L  +      +G LGG+EF          + A +LA+ +  +I N   ++    S  + 
Sbjct: 316 RLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLI-NQPFDLHHF-SKRLA 373

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +           ++  AD A+Y AK+ GRNR++ F+D  N   
Sbjct: 374 CSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEA 421


>gi|121998358|ref|YP_001003145.1| PAS/PAC sensor-containing diguanylate cyclase [Halorhodospira
           halophila SL1]
 gi|121589763|gb|ABM62343.1| diguanylate cyclase with PAS/PAC sensor [Halorhodospira halophila
           SL1]
          Length = 324

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 19/171 (11%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + + ++ D L+G  N     + L         Y ++L+ +  D D FK INDN+GH  GD
Sbjct: 158 LERQAQQDGLTGTYNRRKMDNLLHQERERAIRYRQQLTAMLIDADGFKAINDNYGHEAGD 217

Query: 153 KVIAFLSDQLVVVF----GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           ++   L D +   F     T   +GR GG+EF      +SE+ A  +A  +R  +E    
Sbjct: 218 EL---LHDLVHCCFRPCLRTIDHLGRWGGDEFLVILPETSEEAAYHVAERIRDQVE---- 270

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +  GP   IT+S GI+    +E     +  AD ALY AK+ GRNR+  + 
Sbjct: 271 TLQPGPGA-ITVSIGISAYQPEESPRDWLRSADFALYEAKRGGRNRITRYR 320


>gi|91974917|ref|YP_567576.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91681373|gb|ABE37675.1| diguanylate cyclase [Rhodopseudomonas palustris BisB5]
          Length = 558

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 87/180 (48%), Gaps = 10/180 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYN-EKLSIVFFDIDYF 139
           G   +EL  S N ++ ++ +D LSGL N   F S L      G  N   ++++  D+DYF
Sbjct: 362 GQRERELVASNNSLTVMASMDLLSGLANRRGFQSRLDFEWMRGLQNGHTVALLLLDVDYF 421

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           K  ND++GHP GD  ++ + + L  V   T  F  R GGEEF      +    A  +   
Sbjct: 422 KSFNDSYGHPEGDACLSRIGETLATVANDTGGFAARYGGEEFCLLLPDTDADTAYQVGEM 481

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256
           +R  +E   +   +     +T+S G+A     E  S   +I  AD ALY AK  GRN VV
Sbjct: 482 VRATVERLDVPHHTSLFQRVTVSIGVASTSPTEDASPAELIEAADAALYAAKGRGRNTVV 541


>gi|320180279|gb|EFW55214.1| RNase II stability modulator [Shigella boydii ATCC 9905]
          Length = 557

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S    E  A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR       I + +  S+ I++S       H    +TII  AD A+Y AK+ GR +  
Sbjct: 339 TRLRLPFRIGLIEVYTSCSVGISLSPE-----HGSDSATIIRHADTAMYTAKEGGRGQFC 393

Query: 257 CFS 259
            F+
Sbjct: 394 VFT 396


>gi|319425658|gb|ADV53732.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella putrefaciens 200]
          Length = 1018

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 13/163 (7%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N    +  LG+         +  +++F D+DYFK++ND  GH +GD ++   +
Sbjct: 584 DTLTGLPNRRMLLEYLGAEIKNADRNQDHFALLFLDLDYFKEVNDTLGHEMGDLLLIETA 643

Query: 160 DQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            +L         V RLGG+EF    +A+   +    +  + LR+I E   +   +    +
Sbjct: 644 SRLKSCVRDADVVARLGGDEFTVVLSAMADHKGIERVAEHILRRIAEPYLLGEETA---Y 700

Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           IT S GI         I  ++  ADQA+Y AK  GRNR   F+
Sbjct: 701 ITASIGITLYPDDATSIEGLLKHADQAMYAAKDQGRNRFNYFT 743


>gi|296132565|ref|YP_003639812.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Thermincola sp. JR]
 gi|296031143|gb|ADG81911.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Thermincola potens JR]
          Length = 974

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 9/171 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y R   L+  D L+G+ +H+ F+++L           + LS++  D+D FK  ND +GH 
Sbjct: 596 YERTELLACTDGLTGMYDHTYFLTTLERLLVKAEEKGDPLSLIMVDLDDFKYYNDKYGHT 655

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD ++   +  L     +   + R GG+EFA   + +  ++AA +A  + K I N   N
Sbjct: 656 VGDLILKTTAQILRENVRSDDIIARYGGDEFAVILVNAGPKKAARIAERISKHIANEPFN 715

Query: 210 ISSGPSI-HITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCF 258
                ++ +IT S GIA        S  +I  AD+A+Y+ K++ + +   +
Sbjct: 716 DPETVNVFYITASVGIATYPFDASNSKELIDVADKAMYLTKRTTKAKTSSY 766


>gi|83719449|ref|YP_441502.1| EAL/GGDEF domain-containing protein [Burkholderia thailandensis
           E264]
 gi|83653274|gb|ABC37337.1| EAL/GGDEF domain protein [Burkholderia thailandensis E264]
          Length = 786

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 100/204 (49%), Gaps = 16/204 (7%)

Query: 62  EYILVENLSLVIIS-ITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +Y    N+ L++ S IT+++L   G  +G I K L      ++QL+  D L+GL N  A 
Sbjct: 292 DYHHTRNVYLLMTSFITLAMLAFFGVATGLIGK-LLGREREMTQLAEFDLLTGLANRYAT 350

Query: 119 ISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           + SL       S   +L+I+F D+D FK +ND  GH  GD V+   + +L         +
Sbjct: 351 LRSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVTNEGAL 410

Query: 173 GRLGGEEFAAAALGSS-EQEAAILANDL-RKIIENSQINISSGPSIHITISAGIA-ERCH 229
            R+GG+EF     G + E+ A  LA  + R   E   +    G S  +  S GIA     
Sbjct: 411 ARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPFDVR---GSSFVLHASIGIALHSVE 467

Query: 230 KEPISTIIYRADQALYVAKKSGRN 253
            E    ++ +AD A+Y AK +G+N
Sbjct: 468 NESEIDLLKKADLAMYSAKDAGKN 491


>gi|120599648|ref|YP_964222.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sp. W3-18-1]
 gi|120559741|gb|ABM25668.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. W3-18-1]
          Length = 1018

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 13/163 (7%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N    +  LG+         +  +++F D+DYFK++ND  GH +GD ++   +
Sbjct: 584 DTLTGLPNRRMLLEYLGAEIKNADRNQDHFALLFLDLDYFKEVNDTLGHEMGDLLLIETA 643

Query: 160 DQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            +L         V RLGG+EF    +A+   +    +  + LR+I E   +   +    +
Sbjct: 644 SRLKSCVRDADVVARLGGDEFTVVLSAMADHKGIERVAEHILRRIAEPYLLGEETA---Y 700

Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           IT S GI         I  ++  ADQA+Y AK  GRNR   F+
Sbjct: 701 ITASIGITLYPDDATSIEGLLKHADQAMYAAKDQGRNRFNYFT 743


>gi|219668486|ref|YP_002458921.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2]
 gi|219538746|gb|ACL20485.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2]
          Length = 316

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 10/166 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  L  +D  +G +N  A I+SL +     E L++   DID FK +ND +GH  GD+V+ 
Sbjct: 147 LKNLLSLDAATGAMNKYALINSLKNLTTGKEGLTVAMIDIDDFKLVNDRYGHLTGDRVLN 206

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
                          VGR GGEEF    L   +  + ++   L++I  + +    +    
Sbjct: 207 LFCSVAFTNTRKQDIVGRFGGEEF---MLIFPDMVSRLVIKALQRISTSFRTACMNELGF 263

Query: 217 HITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRVVCF 258
             T S G+AE   K+     I  II  AD+ LY +K +G+NRV  F
Sbjct: 264 SPTFSVGVAEFSTKKMAGMTIDAIIAEADENLYASKNAGKNRVTAF 309


>gi|95929198|ref|ZP_01311942.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95134696|gb|EAT16351.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 554

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 10/161 (6%)

Query: 107 DCLSGLLNHSAFI-----SSLGSYNEKL--SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N   FI       L S  ++L  +++F D+D FK+IND +GH +GD ++  ++
Sbjct: 372 DPLTNLYNRRLFIELAQKQLLYSKRKELLCAVLFLDLDRFKEINDTYGHHIGDLLLKKVA 431

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHI 218
           D+L         + R GG+EF     G +  +    +   L   +     N+  G +IH 
Sbjct: 432 DRLRDTLREADIIARYGGDEFVILLDGITRDDHTFQITEKLVHTLSRPYTNL-DGLTIHT 490

Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           T S G+A    H E + T++ +AD A+Y +K++GR +   F
Sbjct: 491 TPSIGVAMFPKHAEDVQTLLLQADVAMYWSKENGRAQWTLF 531


>gi|316931601|ref|YP_004106583.1| PAS/PAC sensor -containing diguanylate cyclase/phosphodiesterase
           [Rhodopseudomonas palustris DX-1]
 gi|315599315|gb|ADU41850.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris DX-1]
          Length = 840

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 24/179 (13%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ QL+  D L+GL N + F   L        S +E+ +++  D+D FK++ND+ GH  G
Sbjct: 400 RLEQLAYTDPLTGLANRALFKRQLVDLFEKPISESEQNALLLIDLDRFKEVNDSLGHSTG 459

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA---AALGSSEQEAAILANDLRKI---IEN 205
           D ++  ++  L        F+ R+GG+EFA    +   S+E   A+    + K+   +E 
Sbjct: 460 DALLIHVAGVLRQELDPQAFIARIGGDEFAVLTNSPTTSAEATTALADRLIAKLSIPVEL 519

Query: 206 SQINISSGPSIHITI---SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           ++     G +I I I       AE+  +         AD ALY+AK++GR R + F  I
Sbjct: 520 AEGEACIGATIGIAILPEHGATAEKASRN--------ADLALYMAKEAGRGRALLFEPI 570


>gi|289678106|ref|ZP_06498996.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 748

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 21/167 (12%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N +  ++ L           E+ +++F D+D FK +ND+ GH  GDK++  ++
Sbjct: 320 DELTSLFNRAYLMNELTTAFEIRAPRYERATVLFLDLDGFKVVNDSMGHLAGDKLLKAVA 379

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINIS---SGP 214
           ++L     +   + R+GG+EFA   +G  + E A+      K+ E   SQ++ +      
Sbjct: 380 NRLQTCVRSNDVLARIGGDEFAILLMGKDQPETAV------KMAERIVSQLHTAIQIENQ 433

Query: 215 SIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I I+ S GI  A   H +P   ++  AD A+Y AKK GR R   F+
Sbjct: 434 DIFISCSIGIVTAGDSHTKP-EELLRDADVAMYSAKKQGRGRWSIFN 479


>gi|307155228|ref|YP_003890612.1| PAS/PAC and GAF sensors-containing diguanylate cyclase [Cyanothece
           sp. PCC 7822]
 gi|306985456|gb|ADN17337.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp.
           PCC 7822]
          Length = 944

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 61/196 (31%), Positives = 93/196 (47%), Gaps = 14/196 (7%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           +L +  + V I+I  S L   +   IL       + ++Q++   C     NH  +   L 
Sbjct: 753 LLTQLSTQVAIAIGQSELYQQLQAQIL------VDELTQIANRRCFERDFNHEWY--RLT 804

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAA 182
                LS++  DIDYFKQ ND +GHP GD  +  ++  L          V R GGEEF  
Sbjct: 805 REKRFLSLLLCDIDYFKQYNDTYGHPAGDICLKQVAQALKQAARRMTDLVARYGGEEFVI 864

Query: 183 AALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKE---PISTIIY 238
               +    A  +A  +++ I++  I +++S  +  +TIS GIA         P+  +I 
Sbjct: 865 LLPNTDSYGATQVAVAVQQAIDHLHIPHLASAVASSVTISIGIASMIPTADTCPLD-LIN 923

Query: 239 RADQALYVAKKSGRNR 254
            ADQALY AK  GR+R
Sbjct: 924 AADQALYQAKAQGRDR 939


>gi|15596317|ref|NP_249811.1| diguanylate cyclase TpbB [Pseudomonas aeruginosa PAO1]
 gi|107100573|ref|ZP_01364491.1| hypothetical protein PaerPA_01001598 [Pseudomonas aeruginosa PACS2]
 gi|218892914|ref|YP_002441783.1| hypothetical protein PLES_41991 [Pseudomonas aeruginosa LESB58]
 gi|254234255|ref|ZP_04927578.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254239491|ref|ZP_04932813.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|9947039|gb|AAG04509.1|AE004542_5 diguanylate cyclase TpbB [Pseudomonas aeruginosa PAO1]
 gi|126166186|gb|EAZ51697.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126192869|gb|EAZ56932.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218773142|emb|CAW28954.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
          Length = 435

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 18/168 (10%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N + F   L         + E+L+++F D D FK+IND  GH  GD V+  ++
Sbjct: 252 DSLTSLPNRAFFEGRLSRALRDANEHREQLAVLFIDSDRFKEINDRLGHAAGDTVLVNIA 311

Query: 160 DQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQ--INISSGPS 215
            ++         V RLGG+EFA   A L S      I  N    II + Q  I +S G +
Sbjct: 312 MRIRGQLRESDLVARLGGDEFAVLLAPLASGADALRIADN----IIASMQAPIRLSDGST 367

Query: 216 IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR--NRVVCFSD 260
           +  +++ GIA    H +  + +++ AD A+Y+AK+  R   R+   +D
Sbjct: 368 VSTSLTIGIALYPEHADTPAALLHDADMAMYIAKRQARGSRRLAELND 415


>gi|325920205|ref|ZP_08182160.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           gardneri ATCC 19865]
 gi|325549291|gb|EGD20190.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           gardneri ATCC 19865]
          Length = 571

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 83/166 (50%), Gaps = 10/166 (6%)

Query: 100 ISQLSRIDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGD 152
           + Q S  D L+GL N      A    L     +   LS++  D+D+FKQ ND  GH  GD
Sbjct: 398 LRQQSIRDPLTGLYNRRYLEEALNHELARCTRRALPLSVLMLDVDHFKQFNDLHGHSGGD 457

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+A + + L+          R GGEE            A+ +A  LR  IE  Q+ +S 
Sbjct: 458 RVLAAIGEFLLTQMRGEDICCRYGGEELTIILPEVDLSTASRMAEKLRAGIEALQV-MSD 516

Query: 213 GPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G S+  +T S G A    H    + ++ RAD+ALY AK++GRN+V+
Sbjct: 517 GVSLPKVTASFGAASFPEHAGNAAQLLRRADEALYRAKQAGRNQVI 562


>gi|302060301|ref|ZP_07251842.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato K40]
          Length = 711

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 21/167 (12%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N +  ++ L         + E+ +++F D+D FK +ND+ GH  GD+++  ++
Sbjct: 283 DELTALFNRAYLMNELADAFSNPDHHYERATVLFLDLDGFKVVNDSMGHLAGDQLLKRVA 342

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINIS---SGP 214
           ++L         + R+GG+EFA   +G  + E A+      K+ E   SQ++ +    G 
Sbjct: 343 NRLQNCVRANDVLARIGGDEFAILLVGKDQPETAV------KMAERIVSQLHAAIEIEGQ 396

Query: 215 SIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I I+ S GI  A   H +P   ++  AD A+Y AKK GR R   F+
Sbjct: 397 DIFISCSIGIVTAGEGHSKP-EDLLRDADVAMYSAKKQGRGRWSLFN 442


>gi|220935020|ref|YP_002513919.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996330|gb|ACL72932.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Thioalkalivibrio sp. HL-EbGR7]
          Length = 1301

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 12/170 (7%)

Query: 99  RISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           ++  ++  D L+ L N        H A   ++      L++ + D+D FK IND +GH V
Sbjct: 749 QLEHIAHFDALTNLPNRVLLADRLHQAMAQAV-RRGHHLAVAYLDLDGFKAINDRYGHAV 807

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDK++  ++ Q+  V      + RLGG+EF A  L  ++ EA +             ++I
Sbjct: 808 GDKLLMAVAQQMHEVLREEDTLSRLGGDEFVAVLLDLADVEACVPLLTRLLAAAARPVSI 867

Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCF 258
             G  + I+ S G+      E I    ++ +ADQA+Y AK +G+ R   F
Sbjct: 868 -EGRELRISASLGVTFYPQAEQIEAEQLLRQADQAMYQAKLAGKGRYHVF 916


>gi|183222770|ref|YP_001840766.1| hypothetical protein LEPBI_I3429 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912802|ref|YP_001964357.1| signal transduction protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167777478|gb|ABZ95779.1| Signal transduction protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167781192|gb|ABZ99490.1| Hypothetical protein LEPBI_I3429 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 818

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 87/176 (49%), Gaps = 11/176 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEK-----LSIVFFDIDYF 139
           G  + E  +S  RI+ L+  D L+GL N + FI        N K     L+  FFDID F
Sbjct: 369 GVDITERKLSEERITYLAYYDALTGLANRTLFIDHANQALKNHKSTETLLAFYFFDIDNF 428

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K IND+ GH  GD ++  +  +L  V      V R GG+EFA   +  S++  AA  A  
Sbjct: 429 KFINDSLGHTKGDILLQMVGARLKRVMTEVDTVARFGGDEFAILKVDVSNKSSAAEFAQK 488

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRN 253
           +  I+  SQ     G  +  TIS GIA   +    S  ++  +D A+Y AK+ GRN
Sbjct: 489 ILDIL--SQPFHIMGRDLFTTISMGIALSPNDGVTSAELLKNSDMAMYKAKELGRN 542


>gi|312971160|ref|ZP_07785339.1| diguanylate cyclase domain protein [Escherichia coli 1827-70]
 gi|310336921|gb|EFQ02088.1| diguanylate cyclase domain protein [Escherichia coli 1827-70]
 gi|323174859|gb|EFZ60474.1| diguanylate cyclase domain protein [Escherichia coli LT-68]
 gi|333008488|gb|EGK27958.1| diguanylate cyclase domain protein [Shigella flexneri K-272]
 gi|333020651|gb|EGK39911.1| diguanylate cyclase domain protein [Shigella flexneri K-227]
          Length = 138

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 70/131 (53%), Gaps = 10/131 (7%)

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK++ND +GHPVGD+VI  + + +         + R+GGEEF         + 
Sbjct: 1   MIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFGVLLTDIDTER 60

Query: 192 AAILANDLRKIIE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALY 245
           A  LA  +R+ +E     N +  I     + I+I A + +     P    IYR AD ALY
Sbjct: 61  AKALAERIRENVERLTGDNPEYAIPQ--KVTISIGAVVTQENALNPNE--IYRLADNALY 116

Query: 246 VAKKSGRNRVV 256
            AK++GRN+VV
Sbjct: 117 EAKETGRNKVV 127


>gi|39996000|ref|NP_951951.1| GAF domain/GGDEF domain-containing protein [Geobacter
           sulfurreducens PCA]
 gi|39982765|gb|AAR34224.1| GAF domain/GGDEF domain protein [Geobacter sulfurreducens PCA]
          Length = 688

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 87/184 (47%), Gaps = 16/184 (8%)

Query: 87  GSILKELFISYNR---ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDI 136
            SI+ E  +S  R   + QLS  D L+GL N       +         +N  L+++  D+
Sbjct: 485 ASIMIERALSIERADILEQLSITDHLTGLYNRRFLKRRMEEELARSIRHNLNLTVMLIDL 544

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK  ND  GH  GD+ +   +  L         V R GGEEF     G+S++E+  +A
Sbjct: 545 DHFKIYNDLCGHLAGDRALKRTAKILSETARQMDVVTRFGGEEFCIILPGTSKKESIFVA 604

Query: 197 NDLRKIIENSQINISSG-PSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGR 252
             +R+ IE          P   +T S GIA   E    E  ++++  AD ALY AK  GR
Sbjct: 605 ERIRREIEGEDFPHEDNLPLGRLTASIGIASFPEDGSTE--ASLVKAADVALYRAKSDGR 662

Query: 253 NRVV 256
           NRV+
Sbjct: 663 NRVI 666


>gi|331015730|gb|EGH95786.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 763

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 119/274 (43%), Gaps = 51/274 (18%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN-------------LSLVIISI 76
           Y  +F  +F   V  +    L  + L     L  ++ EN             L L I +I
Sbjct: 185 YSGMFHQMFRYGVSLLLGAGLLTMHLMGMRALRLVIPENAELHIPGTENSQQLGLTIAAI 244

Query: 77  TISLLLGYISGS------------------ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           T+ ++ G IS +                  +L +L  +   + Q++  D L+ L+N   F
Sbjct: 245 TLLIIAGSISAAMADKKLQGKENDLQRVNALLTQLDQARVSLQQVAHYDPLTNLINRRGF 304

Query: 119 ----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  L  +      L+++F DID+FK+IND+ GH  GD+++  +++++         
Sbjct: 305 NQIFAEKLLEHTHSKGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDV 364

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA------ 225
           V R GG+EF         +EA  LA+  R + +  +    +G  + +T S GIA      
Sbjct: 365 VARFGGDEFCILLSIPDYEEARHLAH--RVMYKMKEPIALAGRRMVMTTSIGIAVFPRDG 422

Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             C +     ++  AD ALY +K +GRNRV  FS
Sbjct: 423 STCDE-----LLKHADLALYQSKGNGRNRVNFFS 451


>gi|330504403|ref|YP_004381272.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
 gi|328918689|gb|AEB59520.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
          Length = 698

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 91/181 (50%), Gaps = 12/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           ++L +L  +   + Q++  D L+ LLN   F     +  E+       L+++F DID+FK
Sbjct: 246 TLLVQLDQAKASLEQVAHFDPLTELLNRRGFNRVFAATLEEHAVTGRTLAVMFLDIDHFK 305

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND+ GH  GD+++  ++ ++         + R GG+EF   A   S  +   LA    
Sbjct: 306 RINDSLGHDAGDELLRVVAQRIRAALRERDIIARFGGDEFCVVASLDSNADPRGLAA--- 362

Query: 201 KIIENSQINIS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           +++E  +  IS +G  I +T S GI+           ++  AD ALY +K SGRN V  F
Sbjct: 363 RMLEQMKEPISLAGRKIVMTTSVGISLFPQDGSSADELLKHADLALYQSKGSGRNVVHFF 422

Query: 259 S 259
           +
Sbjct: 423 N 423


>gi|322432880|ref|YP_004210129.1| diguanylate cyclase with beta propeller sensor [Acidobacterium sp.
           MP5ACTX9]
 gi|321165107|gb|ADW70811.1| diguanylate cyclase with beta propeller sensor [Acidobacterium sp.
           MP5ACTX9]
          Length = 975

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 2/125 (1%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D+FK++ND  GH  GD V+  ++ ++  +       GR GGEEF     G +  
Sbjct: 833 VLMVDVDHFKRVNDTLGHVAGDCVLEEVAARINGLIRPYDSAGRYGGEEFLVVLPGCTLA 892

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +    A + R  I N    + +G SI +T S G+A          II  ADQALY AK +
Sbjct: 893 DGLQRAEEFRYAIANEPTCVDAG-SIDVTCSFGVAAESGTSAEHLII-SADQALYAAKHA 950

Query: 251 GRNRV 255
           GRNR+
Sbjct: 951 GRNRI 955


>gi|226953968|ref|ZP_03824432.1| GGDEF domain protein [Acinetobacter sp. ATCC 27244]
 gi|226835322|gb|EEH67705.1| GGDEF domain protein [Acinetobacter sp. ATCC 27244]
          Length = 369

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 85/182 (46%), Gaps = 18/182 (9%)

Query: 82  LGYISGSILKELFISYNRIS----QLS---RIDCLSGLLNHSAFISSLGS------YNEK 128
           L  +   +L+E+ I +  +     QLS     D L+GL N   F   L +      Y   
Sbjct: 178 LNTVFNELLEEIQIWHTHLQKENHQLSFQAHHDQLTGLPNRHYFYDELNNIFDNPQYRHN 237

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALG 186
            +++F D + FK IND +GH  GD V+  ++ +L +      F+ RLGG+EFA    A+ 
Sbjct: 238 SALLFLDNNKFKAINDQYGHLAGDAVLTEMASRLKLSVRHEDFIARLGGDEFAIILHAIH 297

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
            +E    I    L    E    N   G SIH + S GIA     E    ++ +ADQA+Y 
Sbjct: 298 QAEHLETIADTILASCKEPLDFN---GQSIHFSFSLGIAFSQFAENPEDLVMQADQAMYK 354

Query: 247 AK 248
           AK
Sbjct: 355 AK 356


>gi|183221186|ref|YP_001839182.1| putative GGDEF family protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911277|ref|YP_001962832.1| two-component response regulator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775953|gb|ABZ94254.1| Two-component response regulator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779608|gb|ABZ97906.1| Putative GGDEF family protein; putative membrane protein
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 397

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 11/169 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
            +I  LSR+D ++ L N    +     Y ++       + +V  D+D  K IND +GH  
Sbjct: 224 QKIEDLSRVDSMTELFNRRHLLEQFDLYKKRSHREGFVIGLVILDLDKLKTINDRYGHKQ 283

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD  I   +  L           R+GG+EF        ++    L   +R  +E  +I I
Sbjct: 284 GDLAIQAFAKTLKSRTRITDIAARIGGDEFCLLVSPIDKEGLHTLTESIRGKMEELKIPI 343

Query: 211 SSGPSIHITISAGIAERC-HKE---PISTIIYRADQALYVAKKSGRNRV 255
            + P+  +T++  I     H E       + ++ D ALY +K  GRNR+
Sbjct: 344 YNAPNESLTLTVSIGGTLFHPEDDPSFDELYHKIDTALYTSKNEGRNRI 392


>gi|304309733|ref|YP_003809331.1| predicted response regulator receiver [gamma proteobacterium HdN1]
 gi|301795466|emb|CBL43664.1| predicted response regulator receiver [gamma proteobacterium HdN1]
          Length = 600

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 9/179 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLS--IVFFDIDYFKQI 142
           + E   +  RI  L+R D L+ LL  +AF  +L S      +EK    +++ D+D FK +
Sbjct: 164 ISERRFAEERIQYLARHDYLTHLLTRTAFEETLTSLLSRIADEKAQHVLLYMDLDQFKLV 223

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD+++  +++ L           RLGG++FA     ++ +     A ++ K 
Sbjct: 224 NDTSGHMAGDELLCQVAELLRRHLRAHDIAARLGGDDFAIILYNATPESGKATAEEIIKA 283

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260
           I N       G    +  S G+    H+   +++++  AD A Y AK+ GRNRV  + D
Sbjct: 284 IGNLAFQ-HDGARHSVGASIGLVSITHEASGVASLLSMADTACYAAKEDGRNRVHVYDD 341


>gi|289668228|ref|ZP_06489303.1| putative signal transduction protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 801

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 9/165 (5%)

Query: 104 SRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D ++GL+N           I    S     ++ F D+D+FK +ND FGH VGD+ + 
Sbjct: 370 ARHDAMTGLINRHEIERRLLRLIELPQSPQMCHALCFVDLDHFKLVNDTFGHAVGDRFLC 429

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             +D + +      ++GRLGG+EFA     +   +A I+   +   +     +   G  +
Sbjct: 430 HFADVITMQLRPGDWLGRLGGDEFAILLANTDLAQAQIVLERMHGTLGQPWSH-QGGRPL 488

Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + S G+ E R     ++ ++  AD A + AK+ GRNR+ CF++
Sbjct: 489 TPSCSFGVVEIRQGVSDLNALMTAADLACHAAKEEGRNRIRCFNE 533


>gi|229164297|ref|ZP_04292229.1| Sensory box protein [Bacillus cereus R309803]
 gi|228619180|gb|EEK76074.1| Sensory box protein [Bacillus cereus R309803]
          Length = 730

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 21/181 (11%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 291 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAMLTTAQTSANDIAVMFLDLDRFKKINDR 350

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKI-- 202
            GH VGD ++  ++ +L     +   V R GG+EF        SE+ A+ +A  +  I  
Sbjct: 351 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPDMYSEKSASFIAEQILTILN 410

Query: 203 ----IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
               I++ +++I+  PSI I +            ++ ++  AD A+Y AK +G+NR V F
Sbjct: 411 KPFFIKDEELSIT--PSIGIAMYPDYGTN-----VTELMKNADMAMYCAKANGKNRFVFF 463

Query: 259 S 259
           S
Sbjct: 464 S 464


>gi|227328891|ref|ZP_03832915.1| diguanylate cyclase with GAF sensor [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 326

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 96/194 (49%), Gaps = 33/194 (17%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQ 141
           ++++L  +   + + S  D L+GLLN         A  S  G+ ++++ IVF D+D FK+
Sbjct: 131 LVQQLTAANAALHEYSYTDSLTGLLNRRGVFYSLEAMFSQAGNDHQQVLIVFIDLDGFKK 190

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAA-----ALGSSEQEAAIL 195
           IND FGH  GD  +  +  +L + +G P   VGRLGG+EF  A     A G +E+  A  
Sbjct: 191 INDQFGHEAGDIFLQEVGRRL-LAWGNPGDVVGRLGGDEFVFARMVNVAPGENERVIASF 249

Query: 196 ANDLRKIIENS----------QINISS-GPSIHITISAGIAERCHKEPISTIIYRADQAL 244
            +D+  +++ S           +NI   G SI I      A+    EP   +I RAD A+
Sbjct: 250 RDDITPLLQGSYSLGKASSLGSVNIEYLGASIGIV----TADPSVDEP-DGVIRRADAAM 304

Query: 245 Y---VAKKSGRNRV 255
           Y   V +K  + R 
Sbjct: 305 YANKVTRKKDQTRA 318


>gi|254513869|ref|ZP_05125930.1| ggef/eal/pas/pac-domain containing protein [gamma proteobacterium
           NOR5-3]
 gi|219676112|gb|EED32477.1| ggef/eal/pas/pac-domain containing protein [gamma proteobacterium
           NOR5-3]
          Length = 810

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 60/199 (30%), Positives = 97/199 (48%), Gaps = 16/199 (8%)

Query: 76  ITISLLLGYISGSI-----LKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLG 123
           +TIS + G  SG +     + +L  +  ++ +L+  D L+ L N           I    
Sbjct: 345 LTISKIDGQNSGFVAIFTDITQLKETEEQLQKLAHYDPLTELPNRYLINERLQQSIRRAQ 404

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
             +E+L++ F DID FK IND+ GH  GDK++A  +++L  +      VGR+GG+EF   
Sbjct: 405 RRSERLAVFFLDIDSFKNINDSLGHLAGDKLLAMTANRLRELLRDDDTVGRIGGDEF--L 462

Query: 184 ALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHK-EPISTIIYRAD 241
            L        +  N   KII    +  I  G S+ ++ S GI+      +   T++  AD
Sbjct: 463 MLLEDINSPDVATNIAEKIIGALRKPTILEGRSVSVSASVGISIYPDDGQTAETLMSNAD 522

Query: 242 QALYVAKKSGRNRVVCFSD 260
            A+Y AK+ GRN    +S+
Sbjct: 523 AAMYSAKEQGRNTFRFYSE 541


>gi|241205349|ref|YP_002976445.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859239|gb|ACS56906.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 551

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 17/169 (10%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            L+  D L+GL N   F   L          +E LS++  D+D FK +ND  GHP GDK+
Sbjct: 120 HLATHDPLTGLPNRRQFSEDLAVSLQETEGSDEALSLMQLDLDDFKPVNDTLGHPAGDKL 179

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-----SEQEAAILANDLRKIIENSQIN 209
           +   + ++     +     RL G+EF   ++G        Q A +L +  +K      I 
Sbjct: 180 LQLAASRIQACLSSDDRAYRLAGDEFTVISMGPGHPAKGHQLAEVLVDAFKKPFTIDGIA 239

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +  G SI I+ S        +     ++  +D ALY AKK GR R   F
Sbjct: 240 LFVGASIGISASPPDGTSPEQ-----LMKASDVALYAAKKEGRGRAKPF 283


>gi|84387104|ref|ZP_00990126.1| GGDEF family protein [Vibrio splendidus 12B01]
 gi|84377965|gb|EAP94826.1| GGDEF family protein [Vibrio splendidus 12B01]
          Length = 383

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 11/173 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           EL  +  ++ +LS  D L+ L N  +    L  + +        L  +  D D FK+IND
Sbjct: 208 ELKRASKKLEELSLTDSLTHLPNRRSAFKQLALHWQDSKELGMPLVCIMIDADNFKRIND 267

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD V+  LS +L   F     V RLGG+EF      +  +    +A   R+ + 
Sbjct: 268 TSGHDAGDLVLQTLSRELKNTFRNDDIVCRLGGDEFLVICPNTDLKGGMHIAETARQKV- 326

Query: 205 NSQINISSGPSIHI-TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
            S++ + +   + I +IS G+AE   + E ++ ++  AD+++Y+AK +G+N V
Sbjct: 327 -SELEVETSHQVWIGSISVGVAEITQEFESMNELVKAADESVYLAKNAGKNSV 378


>gi|332994512|gb|AEF04567.1| hypothetical protein ambt_15285 [Alteromonas sp. SN2]
          Length = 1500

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 98/188 (52%), Gaps = 11/188 (5%)

Query: 81   LLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKL--SIV 132
            ++ Y++  S + E+     RI  L+  D L+GL N +  +  L     G+   K    ++
Sbjct: 1054 IVNYVAAYSNIDEIKNMQRRIEYLATHDELTGLPNRTVLLERLELMISGAKRSKQLCGVL 1113

Query: 133  FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            F D+D FK +NDN GH VGD ++  ++ +L         + R+GG+EF A    S   E 
Sbjct: 1114 FVDLDNFKPVNDNLGHKVGDLLLKQVTKRLQQCIRDTDMLARIGGDEFVALISASHIDEI 1173

Query: 193  AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSG 251
              +A  +   ++N + ++S+  SI ++ S GIA        S I+ + AD+A+Y+AK SG
Sbjct: 1174 DDIAKRIISQVQN-EFDVSTH-SISVSASIGIAVYPADGISSEILLQHADEAMYLAKSSG 1231

Query: 252  RNRVVCFS 259
            RN+   F+
Sbjct: 1232 RNQYQYFT 1239


>gi|332854798|ref|ZP_08435561.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332868910|ref|ZP_08438487.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
 gi|332727800|gb|EGJ59204.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332733058|gb|EGJ64259.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
          Length = 542

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 9/164 (5%)

Query: 99  RISQLSRIDCLSGLLNH---SAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152
           ++  ++  D L+G+ N    S ++  + SY +K S   ++  DID FK +ND +GH VGD
Sbjct: 379 QLKNIANTDPLTGVSNRLALSEYLKIVESYPQKFSQTCLMIIDIDRFKHVNDQYGHIVGD 438

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
           +VI  ++DQL         + R GG+EF          +A +LA  +R  I   +I++S 
Sbjct: 439 QVIRRIADQLKANVRASDLIVRYGGDEFLILLEQVQFLDARLLAEKIRIAISLEEIDLSG 498

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   +H+++S G A          ++  AD++L  AK  GRN V
Sbjct: 499 TKEKLHVSVSIGFA--IGATSWMELLENADRSLLRAKARGRNVV 540


>gi|323496757|ref|ZP_08101802.1| diguanylate cyclase/phosphodiesterase domain 2 [Vibrio sinaloensis
           DSM 21326]
 gi|323318182|gb|EGA71148.1| diguanylate cyclase/phosphodiesterase domain 2 [Vibrio sinaloensis
           DSM 21326]
          Length = 317

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 14/171 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGD 152
             +++L+  D L+GL N  A  +   +Y      ++ +++F D+D FKQ+ND+ GH  GD
Sbjct: 151 QELAKLANEDPLTGLFNRQALKNHFEAYSKQNGQQRSALMFIDLDDFKQVNDHLGHKAGD 210

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  +++ L        F+ RLGG+EF   A    + E    A+ L  + + SQ  +  
Sbjct: 211 LVLIEVANWLRQYAPPSAFIARLGGDEFVILASEQPQDELNRFADHL--LSQASQPILLD 268

Query: 213 GPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRVVCFS 259
                I  S GI   C+ +    P   +   AD+A+Y  K++G+N VV  +
Sbjct: 269 NGEAKIGFSIGI---CYFQSSLHPFEELYVAADKAMYQVKQTGKNGVVSIT 316


>gi|313682629|ref|YP_004060367.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313155489|gb|ADR34167.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 624

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 4/134 (2%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L ++  DIDYFK++ND FGH  GD+V+   +  +        ++ R GGEEF       +
Sbjct: 495 LGVIMCDIDYFKRVNDTFGHNRGDEVLKEFAATVQKSIRNEDYLIRWGGEEFIVLVKVDT 554

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
            +   I+A  +R  ++N+           IT S G+      E I   I +AD+ALY AK
Sbjct: 555 IESLQIIAEHIRTAVQNTYFEEVEK----ITASLGVTLFQENETILACIAKADKALYTAK 610

Query: 249 KSGRNRVVCFSDIE 262
            +GRN++  +  +E
Sbjct: 611 ANGRNQIQVYEFLE 624


>gi|312621100|ref|YP_003993828.1| hypothetical protein pPHDD1_p146 [Photobacterium damselae subsp.
           damselae]
 gi|311872821|emb|CBX86912.1| hypothetical protein [Photobacterium damselae subsp. damselae]
          Length = 558

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 7/130 (5%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +V  DID FK IND +GH VGD V+  LS+ +  +      + R+GGEEFA    G   Q
Sbjct: 434 LVLIDIDNFKLINDRYGHDVGDYVLKKLSNVISHLLPNNSEIYRIGGEEFAIIFRGCHPQ 493

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
               + N +R  +E    N+S      +TIS GIA   + + +     +AD+ LY++K S
Sbjct: 494 NIVDIMNHIRINVE----NLSWNSIDKVTISIGIARSDNSKDVYK---KADELLYLSKTS 546

Query: 251 GRNRVVCFSD 260
           G+N++    D
Sbjct: 547 GKNQLSIEED 556


>gi|294651527|ref|ZP_06728836.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|292822550|gb|EFF81444.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 366

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 85/182 (46%), Gaps = 18/182 (9%)

Query: 82  LGYISGSILKELFISYNRIS----QLS---RIDCLSGLLNHSAFISSLGS------YNEK 128
           L  +   +L+E+ I +  +     QLS     D L+GL N   F   L +      Y   
Sbjct: 175 LNTVFNELLEEIQIWHTHLQKENHQLSFQAHHDQLTGLPNRHYFYDELNNIFDNPQYRHN 234

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALG 186
            +++F D + FK IND +GH  GD V+  ++ +L +      F+ RLGG+EFA    A+ 
Sbjct: 235 SALLFLDNNKFKAINDQYGHLAGDAVLTEMASRLKLSVRHEDFIARLGGDEFAIILHAIH 294

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
            +E    I    L    E    N   G SIH + S GIA     E    ++ +ADQA+Y 
Sbjct: 295 QAEHLETIADTILASCKEPLDFN---GQSIHFSFSLGIAFSQFAENPEDLVMQADQAMYK 351

Query: 247 AK 248
           AK
Sbjct: 352 AK 353


>gi|269105142|ref|ZP_06157836.1| hypothetical membrane spanning protein [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268160592|gb|EEZ39091.1| hypothetical membrane spanning protein [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 559

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 7/130 (5%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +V  DID FK IND +GH VGD V+  LS+ +  +      + R+GGEEFA    G   Q
Sbjct: 435 LVLIDIDNFKLINDRYGHDVGDYVLKKLSNVISHLLPNNSEIYRIGGEEFAIIFRGCHPQ 494

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
               + N +R  +E    N+S      +TIS GIA   + + +     +AD+ LY++K S
Sbjct: 495 NIVDIMNHIRINVE----NLSWNSIDKVTISIGIARSDNSKDVYK---KADELLYLSKTS 547

Query: 251 GRNRVVCFSD 260
           G+N++    D
Sbjct: 548 GKNQLSIEED 557


>gi|290960135|ref|YP_003491317.1| diguanylate cyclase [Streptomyces scabiei 87.22]
 gi|260649661|emb|CBG72776.1| putative diguanylate cyclase [Streptomyces scabiei 87.22]
          Length = 633

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 27/190 (14%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS------YNE----KLSIVFFDIDYFKQINDNFGH 148
           R+  L   D ++ L N + F   L +      Y+E    ++ +V+ D+D FK +ND  GH
Sbjct: 156 RLRHLQMHDPVTRLPNRTLFFEQLSAALEREGYDEVGTGRIGLVYLDLDGFKAVNDTLGH 215

Query: 149 PVGDKVIAFLSDQLVVVF---------GTPM---FVGRLGGEEFAAAALGSSEQEA-AIL 195
            VGD+++A ++++L             GTP     V RLGG+EFA     S+  E  A L
Sbjct: 216 RVGDRLLAAVAERLTRCADEAALLRKPGTPAGAPLVARLGGDEFALLVEDSTGTEQLADL 275

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNR 254
           A+ + K ++ +  ++ +G  + ++ S G+ ER      +T ++  AD  LY AK  G+ R
Sbjct: 276 ADSVLKALQ-APFDL-AGQRLSVSASIGVVERQSTSTTTTGLMQAADTTLYWAKADGKAR 333

Query: 255 VVCFSDIENN 264
              F D E N
Sbjct: 334 WTLF-DPERN 342


>gi|315500253|ref|YP_004089056.1| diguanylate cyclase/phosphodiesterase with pas/pac and mhyt
           sensor(s) [Asticcacaulis excentricus CB 48]
 gi|315418265|gb|ADU14905.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Asticcacaulis excentricus CB 48]
          Length = 929

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 19/175 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +RI+ ++R D L+GL N   F       +        K++ V  D+D FK+IND  GH  
Sbjct: 497 DRIAHMARHDGLTGLPNREHFNQHTDRELERAARTGHKVAAVAIDLDRFKEINDVRGHAA 556

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE----AAILANDLRKIIENS 206
           GD+V+  ++++L  + G   FV R+GG+EFA     +  +E     + L   L   I+  
Sbjct: 557 GDQVLKIIAERLQRLCGDTEFVARIGGDEFACVKTSAEARELSDFVSRLDAALHDPIDLD 616

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR---NRVVCF 258
              +S G S+ + +    A+   +EP   ++  AD ALY AK   R   +  VC+
Sbjct: 617 GFEVSPGGSMGVAVYPDDAD--GREP---LMNNADLALYRAKAQPRINGHEAVCY 666


>gi|15640673|ref|NP_230302.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|9655090|gb|AAF93819.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae O1
           biovar El Tor str. N16961]
          Length = 684

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGS--YNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+GL N   F   L     NE  L +++ DID FK IND+ GH +GDKVI  ++ 
Sbjct: 256 AHIDSLTGLYNRHGFTKRLEQCIQNETPLVMLYLDIDNFKNINDSLGHHIGDKVIKEVAA 315

Query: 161 QLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           +L  +      +G LGG+EF          + A +LA+ +  +I N   ++    S  + 
Sbjct: 316 RLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLI-NQPFDLHHF-SKRLA 373

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +           ++  AD A+Y AK+ GRNR++ F+D  N   
Sbjct: 374 CSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEA 421


>gi|332995104|gb|AEF05159.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Alteromonas sp. SN2]
          Length = 352

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 66/129 (51%), Gaps = 3/129 (2%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS V  D+D+FK+IND +GH VGDKV+  L+  +     +   V R GGEEF      + 
Sbjct: 226 LSAVVVDVDFFKKINDTYGHDVGDKVLIHLAQIMRSAIRSTDLVSRTGGEEFLIIYPATP 285

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVA 247
              A  LA  +R  IE++      G   H +T S G+A       +   I  AD  LY A
Sbjct: 286 LSVAVKLAEKIRIEIESTP--FEDGDIRHPLTSSFGVATALADVNVEAAIKLADDNLYEA 343

Query: 248 KKSGRNRVV 256
           K++GRN VV
Sbjct: 344 KRTGRNCVV 352


>gi|332992396|gb|AEF02451.1| sensory box/GGDEF family protein [Alteromonas sp. SN2]
          Length = 322

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 97/212 (45%), Gaps = 21/212 (9%)

Query: 67  ENLSLVIISITISLLLGYISGS------ILKELFI---SYNRISQLSRIDCLSGLLNHSA 117
           +N + V + ++IS L    S +      IL++L +    Y  +   +  D L+GL N   
Sbjct: 111 DNQTHVCVEMSISTLPEAFSSANTLYLCILRDLTLHKAEYGSLLHKANTDYLTGLANRHR 170

Query: 118 FISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTP 169
           F   L          +  LSI+F DID+FK  ND +GH  GD+ +  + + + +      
Sbjct: 171 FAEYLDKQWDVCEQDDVPLSIIFIDIDHFKDFNDQYGHIAGDRCLKRIGETISLSLPNRD 230

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERC 228
               R GGEEFA      S Q A +LA  +++ I   S    +      +T+S G+A + 
Sbjct: 231 TLAARYGGEEFALVLPRCSAQTAQLLAIRIKRHISQLSTRQFALSQESELTVSMGVATQM 290

Query: 229 HKEPIST--IIYRADQALYVAKKSGRNRVVCF 258
                S   ++  AD  LY AK  GR++ +CF
Sbjct: 291 ENRYSSKEGLLNAADTLLYQAKSQGRDQ-ICF 321


>gi|262172271|ref|ZP_06039949.1| hypothetical protein VII_003098 [Vibrio mimicus MB-451]
 gi|261893347|gb|EEY39333.1| hypothetical protein VII_003098 [Vibrio mimicus MB-451]
          Length = 684

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGS--YNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+GL N   F   L     NE  L +++ DID FK IND+ GH +GDKVI  ++ 
Sbjct: 256 AHIDSLTGLYNRHGFTKRLEQCIQNETPLVLLYLDIDNFKNINDSLGHHIGDKVIKEVAA 315

Query: 161 QLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           +L  +      +G LGG+EF          + A +LA+ +  +I N   ++    S  + 
Sbjct: 316 RLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLI-NQPFDLHHF-SKRLA 373

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +           ++  AD A+Y AK+ GRNR++ F+D  N   
Sbjct: 374 CSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEA 421


>gi|239904880|ref|YP_002951618.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239794743|dbj|BAH73732.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 687

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 81/176 (46%), Gaps = 11/176 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL-GSY------NEKLSIVFFDIDYFKQINDNFGH 148
           S  ++  LS  D L+G+ N   F  +  G Y         LS+V  DIDYFK  ND +GH
Sbjct: 362 SNRKLEALSATDPLTGIANRRRFDEAFAGEYARHARTGAPLSLVMLDIDYFKNFNDAYGH 421

Query: 149 PVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
             GD  +A ++  +      P     R GGEEF      +S +    +A  +R+ +    
Sbjct: 422 AQGDACLAAVARAMAGCLQRPGDLAARYGGEEFICLLPDTSPRGTRTVAESIREAVAALA 481

Query: 208 I-NISSGPSIHITISAG-IAERCHKEPISTIIYRA-DQALYVAKKSGRNRVVCFSD 260
           I +  S  +  +T+S G +   C  +     ++R  D  LY AK++GRNRV    D
Sbjct: 482 IPHARSSAAAVVTVSIGALTAACPPDADPGDLFRQVDALLYKAKENGRNRVEAGGD 537


>gi|167618394|ref|ZP_02387025.1| EAL/GGDEF domain protein [Burkholderia thailandensis Bt4]
 gi|257139814|ref|ZP_05588076.1| EAL/GGDEF domain-containing protein [Burkholderia thailandensis
           E264]
          Length = 772

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 100/204 (49%), Gaps = 16/204 (7%)

Query: 62  EYILVENLSLVIIS-ITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +Y    N+ L++ S IT+++L   G  +G I K L      ++QL+  D L+GL N  A 
Sbjct: 278 DYHHTRNVYLLMTSFITLAMLAFFGVATGLIGK-LLGREREMTQLAEFDLLTGLANRYAT 336

Query: 119 ISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           + SL       S   +L+I+F D+D FK +ND  GH  GD V+   + +L         +
Sbjct: 337 LRSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVTNEGAL 396

Query: 173 GRLGGEEFAAAALGSS-EQEAAILANDL-RKIIENSQINISSGPSIHITISAGIA-ERCH 229
            R+GG+EF     G + E+ A  LA  + R   E   +    G S  +  S GIA     
Sbjct: 397 ARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPFDVR---GSSFVLHASIGIALHSVE 453

Query: 230 KEPISTIIYRADQALYVAKKSGRN 253
            E    ++ +AD A+Y AK +G+N
Sbjct: 454 NESEIDLLKKADLAMYSAKDAGKN 477


>gi|86356799|ref|YP_468691.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|86280901|gb|ABC89964.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
          Length = 765

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 13/183 (7%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVF 133
           L  +I+G  ++   +  +RI  ++  D L+GL N +         +      N K+++ +
Sbjct: 316 LATHIAGIAIERKRVD-DRIHFMAHHDDLTGLPNRAFLKERLAGILDQARRNNRKVTVAY 374

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK +ND  GH  GD+V+  ++ ++         V RLGG+EF    +  S  +A 
Sbjct: 375 IDLDNFKDVNDGRGHAAGDEVLKEIATRMANCIRASDMVVRLGGDEFLVVLVHQSSHDAG 434

Query: 194 ILA--NDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250
           I     DL+K I N  I+ +SG  I IT S G+A           ++  AD+A+Y AK+ 
Sbjct: 435 IARRLRDLQKAI-NRPIHGASG-EIAITSSIGVAAFPVDGATSEELLANADRAMYRAKQL 492

Query: 251 GRN 253
           GRN
Sbjct: 493 GRN 495


>gi|88797655|ref|ZP_01113244.1| putative phosphodiesterase [Reinekea sp. MED297]
 gi|88779827|gb|EAR11013.1| putative phosphodiesterase [Reinekea sp. MED297]
          Length = 975

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 86/164 (52%), Gaps = 7/164 (4%)

Query: 107 DCLSGLLNHS---AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL N S   A+I       E+ S++ FD++ FK+IND+FGH  GD+++  +  ++ 
Sbjct: 558 DSLTGLGNRSQLHAWIKVALPVKERASLLLFDLNRFKEINDSFGHQFGDRLLCEIGPRIS 617

Query: 164 VVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
              G    ++ RLGG+EFA     +  + ++ LA  L K +  S      G    +  S 
Sbjct: 618 STLGDREHYLSRLGGDEFALFLPDTDTETSSELAGKLHKALAKSY--TIDGLRFQVEASI 675

Query: 223 GIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           G+A+   H +    ++  AD A+Y AK + R+ V+    ++N+T
Sbjct: 676 GVAQFPQHGDDGHELLRCADVAMYAAKHTNRSVVLFDPQLDNST 719


>gi|330895802|gb|EGH28091.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 748

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 21/167 (12%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N +  ++ L +         E+ +++F D+D FK +ND+ GH  GDK++  ++
Sbjct: 320 DELTSLFNRAYLMNELTTAFEIRDPRYERATVLFLDLDGFKVVNDSMGHLAGDKLLKAVA 379

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINIS---SGP 214
           ++L     +   + R+GG+EFA   +G  + E A+      K+ E   SQ++ +      
Sbjct: 380 NRLQTCVRSNDVLARIGGDEFAILLMGKDQPETAV------KMAERIVSQLHTAIQIENQ 433

Query: 215 SIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I I+ S GI  A   H +P   ++  AD A+Y AKK GR R   F+
Sbjct: 434 DIFISCSIGIVTAGDSHTKP-EELLRDADVAMYSAKKQGRGRWSIFN 479


>gi|327483453|gb|AEA77860.1| C-di-GMP phosphodiesterase A-like protein [Vibrio cholerae
           LMA3894-4]
          Length = 684

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGS--YNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+GL N   F   L     NE  L +++ DID FK IND+ GH +GDKVI  ++ 
Sbjct: 256 AHIDSLTGLYNRHGFTKRLEQCIQNETPLVMLYLDIDNFKNINDSLGHHIGDKVIKEVAA 315

Query: 161 QLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           +L  +      +G LGG+EF          + A +LA+ +  +I N   ++    S  + 
Sbjct: 316 RLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLI-NQPFDLHHF-SKRLA 373

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +           ++  AD A+Y AK+ GRNR++ F+D  N   
Sbjct: 374 CSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEA 421


>gi|319778162|ref|YP_004134592.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171881|gb|ADV15418.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 334

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 13/168 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+RID L+GL N   F   L +  ++       LS++  D D FK+ ND +GH  GD
Sbjct: 165 LERLTRIDGLTGLGNRRYFDEYLAAEWKRAFRAQSPLSLLMIDADNFKRYNDTYGHMAGD 224

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           +V+  ++  +    G       R GGEEF    + +  ++++ +A  L + +   ++NI 
Sbjct: 225 EVLKQIARVIQSGSGRSTDLAARYGGEEFVVVLVDTLLEQSSAIAERLVQGVR--ELNIP 282

Query: 212 SGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            GP   +TIS G+A       E  +  +  AD AL+ AK  GRNRV  
Sbjct: 283 HGPD-RVTISVGVATAVPTADETPNDFVNAADLALFRAKSEGRNRVAV 329


>gi|306821284|ref|ZP_07454896.1| conserved hypothetical protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550684|gb|EFM38663.1| conserved hypothetical protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 359

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 106/200 (53%), Gaps = 18/200 (9%)

Query: 64  ILVENLSLVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLSGLLNHS---A 117
           ++V+NL +V+IS+ I+++   L Y      KEL +  N       +D L+ L N      
Sbjct: 165 VIVDNLFVVLISVGINIIFSTLKYREFEYKKELILENN-------MDFLTKLYNRKYVQK 217

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
           +++S    N+  ++V  D+D FK+IND+FGH  GD+++  ++D L   F     + RLGG
Sbjct: 218 YVTSFEGKNKLSAMVIIDLDNFKEINDSFGHISGDELLIDIADILRECFKDVRCISRLGG 277

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHITISAGI--AERCHKEPIS 234
           +EF   +     ++  +   ++ + +E   I +  +G S+ ++ S GI  ++   K    
Sbjct: 278 DEFLLFSAYIDNRDDFL--EEVGRFMERFPITMEKNGISVKVSASVGIVFSDTGEKNLYE 335

Query: 235 TIIYRADQALYVAKKSGRNR 254
            +   AD+A+Y +K +G+N+
Sbjct: 336 KMYKLADEAMYKSKVNGKNQ 355


>gi|291521969|emb|CBK80262.1| diguanylate cyclase (GGDEF) domain [Coprococcus catus GD/7]
          Length = 631

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 91/184 (49%), Gaps = 18/184 (9%)

Query: 86  SGSILKELFISYN-----RISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDID 137
           SG  LK + IS +      +  L+  D L+GL N   F S L    +K     + + D+D
Sbjct: 442 SGIPLKVMMISQDIGKRHELENLANTDGLTGLFNERYFSSVLHRKEKKKLPFVLYYLDLD 501

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK +ND +GH +GDK++  ++++L+    +  F  R+GG+EF  A + S+E E ++   
Sbjct: 502 HFKPVNDTYGHDMGDKLLKAVAERLLKCIRSNDFAFRIGGDEF--ALIISAEMEDSLCMQ 559

Query: 198 DLRKIIEN----SQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252
              +II++     +I+   G ++HI  S G A      E    I   ADQ +Y  KK   
Sbjct: 560 TKMRIIQSLLRPYEID---GKTLHIGASCGYAVYPLETEDTGKIRILADQRMYAEKKENH 616

Query: 253 NRVV 256
            +  
Sbjct: 617 QKAA 620


>gi|254423366|ref|ZP_05037084.1| GGDEF domain protein [Synechococcus sp. PCC 7335]
 gi|196190855|gb|EDX85819.1| GGDEF domain protein [Synechococcus sp. PCC 7335]
          Length = 434

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 107/221 (48%), Gaps = 20/221 (9%)

Query: 54  GLTPFYGLEYILVEN---LSLVIISITISL---LLGYISGSILKELFISYNR-ISQLSRI 106
           G + ++G+  + + N    S   ++ T S+   L   I+ SI  +  I+ N+ + +L+  
Sbjct: 185 GASQYWGILALALANDQTWSASAVTDTQSIATELASAIAHSIQHQALITNNQALQKLALS 244

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ + N   F          L    + LS++  DID FK  ND FGHP GD+ +  ++
Sbjct: 245 DGLTSIANRRRFDEYIEDEWQRLARDQQPLSLILCDIDQFKLYNDTFGHPAGDRCLIHIA 304

Query: 160 DQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217
             L+ V   +   V R GGEEFA     +    A  +A ++   I   QI + +S    +
Sbjct: 305 RALLQVSQRSADLVARYGGEEFAIILPNTDTHGAWRVAQNIHSSIRGLQIAHAASSNEPY 364

Query: 218 ITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255
           ++++ GIA      P ST   ++  +D ALY AK+ GRNR 
Sbjct: 365 LSVTLGIATII-PGPDSTPQVLLQASDIALYYAKQQGRNRT 404


>gi|209885885|ref|YP_002289742.1| ggdef-domain containing protein [Oligotropha carboxidovorans OM5]
 gi|209874081|gb|ACI93877.1| ggdef-domain containing protein [Oligotropha carboxidovorans OM5]
          Length = 405

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 4/128 (3%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           ++   DID FK +ND  GH VGD+V+  ++  L         V R GGEEF    L    
Sbjct: 257 AVAVIDIDNFKTVNDTHGHDVGDQVLVTVASLLREHSRKEDMVARSGGEEF-TVLLNVEH 315

Query: 190 QEAAILA-NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVA 247
              A+ A   +R  +E ++  ++    I +TISAG+A     +     I  RADQALY A
Sbjct: 316 HTTAVEAIERMRLAVEQARF-VTGAVRIRVTISAGVAAYLPTDNTFEEIFRRADQALYSA 374

Query: 248 KKSGRNRV 255
           K +GRNRV
Sbjct: 375 KAAGRNRV 382


>gi|94263701|ref|ZP_01287509.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|93455900|gb|EAT06059.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
          Length = 833

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 93/174 (53%), Gaps = 7/174 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           EL   Y+ ++ L     L+  L+H+  ++       +L++ + D+D FK+IND  GH VG
Sbjct: 398 ELIAHYDTLTGLPNRALLTDRLHHA--MAQTFRRQTRLAVAYLDLDGFKEINDTHGHDVG 455

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++  L++++         +GRLGG+EF A     ++ E  +    L++++  + + +S
Sbjct: 456 DFLLRTLAERMQHNMRESDTLGRLGGDEFIAIFQDLADDETCLPL--LQRLLNAAALPVS 513

Query: 212 SGPSI-HITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIE 262
              +I  ++ S G+      E I    ++ +ADQA+Y AK++G+NR   F  ++
Sbjct: 514 YQETILQVSASLGVTFFPQSEKIDADQLLRQADQAMYQAKQAGKNRYHLFDTVQ 567


>gi|15601319|ref|NP_232950.1| GGDEF family protein [Vibrio cholerae O1 biovar eltor str. N16961]
 gi|121728903|ref|ZP_01681911.1| GGDEF family protein [Vibrio cholerae V52]
 gi|147672041|ref|YP_001215333.1| GGDEF family protein [Vibrio cholerae O395]
 gi|153819250|ref|ZP_01971917.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|153822844|ref|ZP_01975511.1| GGDEF family protein [Vibrio cholerae B33]
 gi|227812128|ref|YP_002812138.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|229506270|ref|ZP_04395779.1| GGDEF domain protein [Vibrio cholerae BX 330286]
 gi|229509610|ref|ZP_04399092.1| GGDEF domain protein [Vibrio cholerae B33]
 gi|229516567|ref|ZP_04406014.1| GGDEF domain protein [Vibrio cholerae RC9]
 gi|229605820|ref|YP_002876524.1| GGDEF domain protein [Vibrio cholerae MJ-1236]
 gi|254849721|ref|ZP_05239071.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255746663|ref|ZP_05420610.1| GGDEF domain protein [Vibrio cholera CIRS 101]
 gi|262158746|ref|ZP_06029859.1| GGDEF domain protein [Vibrio cholerae INDRE 91/1]
 gi|262166969|ref|ZP_06034688.1| GGDEF domain protein [Vibrio cholerae RC27]
 gi|298499356|ref|ZP_07009162.1| GGDEF family protein [Vibrio cholerae MAK 757]
 gi|9657969|gb|AAF96462.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121628831|gb|EAX61292.1| GGDEF family protein [Vibrio cholerae V52]
 gi|126510199|gb|EAZ72793.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|126519621|gb|EAZ76844.1| GGDEF family protein [Vibrio cholerae B33]
 gi|146314424|gb|ABQ18964.1| GGDEF family protein [Vibrio cholerae O395]
 gi|227011270|gb|ACP07481.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|227015390|gb|ACP11599.1| GGDEF family protein [Vibrio cholerae O395]
 gi|229346448|gb|EEO11419.1| GGDEF domain protein [Vibrio cholerae RC9]
 gi|229353560|gb|EEO18498.1| GGDEF domain protein [Vibrio cholerae B33]
 gi|229356621|gb|EEO21539.1| GGDEF domain protein [Vibrio cholerae BX 330286]
 gi|229372306|gb|ACQ62728.1| GGDEF domain protein [Vibrio cholerae MJ-1236]
 gi|254845426|gb|EET23840.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255736417|gb|EET91815.1| GGDEF domain protein [Vibrio cholera CIRS 101]
 gi|262024610|gb|EEY43292.1| GGDEF domain protein [Vibrio cholerae RC27]
 gi|262029319|gb|EEY47970.1| GGDEF domain protein [Vibrio cholerae INDRE 91/1]
 gi|297541337|gb|EFH77388.1| GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 412

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 23/168 (13%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+ +    A    L     K ++   D+D+FK+ ND +GH  GD V+  ++ +L  + 
Sbjct: 241 DPLTQIPGRQALDQDLKHIGRKFTLAMLDVDHFKKFNDTYGHDTGDDVLRLVASRLREIN 300

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSIH------ 217
           G    V R GGEEF+    G   +E       LR+ IE+ ++   + +  P  H      
Sbjct: 301 GKAR-VYRYGGEEFSIIYKGKLAKEVLPFIEALRQDIESYELVIRDTNQRPKSHAEGAKK 359

Query: 218 -----------ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
                      ITIS G+ +   ++ PI   +  AD ALY AK++GRN
Sbjct: 360 RSRKSNSDIVTITISIGVCDSELYRHPIEA-LKAADGALYKAKQAGRN 406


>gi|262163932|ref|ZP_06031671.1| hypothetical protein VMA_000372 [Vibrio mimicus VM223]
 gi|262027460|gb|EEY46126.1| hypothetical protein VMA_000372 [Vibrio mimicus VM223]
          Length = 684

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGS--YNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+GL N   F   L     NE  L +++ DID FK IND+ GH +GDKVI  ++ 
Sbjct: 256 AHIDSLTGLYNRHGFTKRLEQCIQNETPLVLLYLDIDNFKNINDSLGHHIGDKVIKEVAA 315

Query: 161 QLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           +L  +      +G LGG+EF          + A +LA+ +  +I N   ++    S  + 
Sbjct: 316 RLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLI-NQPFDLHHF-SKRLA 373

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +           ++  AD A+Y AK+ GRNR++ F+D  N   
Sbjct: 374 CSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEA 421


>gi|228968479|ref|ZP_04129467.1| Sensory box protein [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228791185|gb|EEM38799.1| Sensory box protein [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 586

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 147 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKVILNTAQTNANDVAVMFLDLDRFKKINDR 206

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD ++  ++++L     +   V R GG+EF         +++AI   +    I N
Sbjct: 207 LGHDVGDLLLIEVANRLRGCLRSKDVVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 266

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I  G  + IT S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 267 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 320


>gi|229099781|ref|ZP_04230706.1| Sensory box protein [Bacillus cereus Rock3-29]
 gi|228683670|gb|EEL37623.1| Sensory box protein [Bacillus cereus Rock3-29]
          Length = 892

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 11/176 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 453 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKTILNTAQTSANDVAVMFLDLDRFKKINDR 512

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIE 204
            GH VGD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  I+ 
Sbjct: 513 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPDMYSEKSAAFIAEQILTIL- 571

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           N    I     + +T S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 572 NKPFFIKD-EELSVTPSIGIAMYPDYGTDVTELMKNADLAMYRAKANGKNRFVFFS 626


>gi|254511651|ref|ZP_05123718.1| sensor histidine kinase [Rhodobacteraceae bacterium KLH11]
 gi|221535362|gb|EEE38350.1| sensor histidine kinase [Rhodobacteraceae bacterium KLH11]
          Length = 587

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 70/157 (44%), Gaps = 8/157 (5%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N      +L             LS++  D+D+FK+ ND  GH  GD V+  + 
Sbjct: 407 DPLTGLFNRRHMTDTLRKSISRSQQTGAPLSLIAVDVDHFKKFNDTHGHDAGDMVLRAVG 466

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L           R+GGEEF      ++ +E    A  +R+ +E   +         +T
Sbjct: 467 AALEQGCDRDEVACRIGGEEFMLILPDNTPEEVMTRAEQIRQAVEAIAVRYGEKSLPRVT 526

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           IS G+A    H      ++  AD+ALY AK  GRN+V
Sbjct: 527 ISVGVAHYPAHGTMPQDLMRTADEALYAAKDKGRNQV 563


>gi|77359284|ref|YP_338859.1| hypothetical protein PSHAa0317 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874195|emb|CAI85416.1| putative orphan protein ; putative sensory-box domain
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 843

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 91/179 (50%), Gaps = 14/179 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE--------KLSIVFFDIDYFKQINDNFGHPV 150
           ++  L+  D L+GL N   F   L    +        + ++++ D+D+FK IND+ GH  
Sbjct: 401 QLRHLALHDTLTGLHNRYYFDQQLNRICQPQHTHSDIEHALIYIDLDHFKIINDSKGHQQ 460

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  ++   +    T   V R+GG+EFA     ++  +A ++A  +   IE +Q   
Sbjct: 461 GDIVLKEVAQLFITNISTEHLVFRVGGDEFAVILKHTNLLDAHLIAEGICNAIEQNQFK- 519

Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFS--DIENNT 265
           S      I+ S G+ +   K  +P S  + +AD ALY+AK  GRN V C++  D  NNT
Sbjct: 520 SEEQIYSISCSIGLTQITEKNCDP-SECLKQADIALYIAKNLGRNLVHCYAKQDAHNNT 577


>gi|319936680|ref|ZP_08011093.1| hypothetical protein HMPREF9488_01926 [Coprobacillus sp. 29_1]
 gi|319808237|gb|EFW04802.1| hypothetical protein HMPREF9488_01926 [Coprobacillus sp. 29_1]
          Length = 747

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 82/160 (51%), Gaps = 12/160 (7%)

Query: 107 DCLSGLLNHSAFISSLGSY-NEKLSI------VFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F   +  Y  +K S+      +  D+D FK IND+ GH  GD+VI  ++
Sbjct: 588 DGLTGLYNRQTFNQFVDDYLKDKKSVSDYCAYMIVDLDNFKSINDSLGHSTGDEVIQKVA 647

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-I 218
             L  +     +VGR GG+EF       +++  A + N  R+II   +I      SIH I
Sbjct: 648 TLLESICFNSGYVGRFGGDEFVIFLY--AQESYAEIENKAREIIR--RIEGIKMDSIHDI 703

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           T S GI     ++    +  ++DQALYV+KKSG+ R   +
Sbjct: 704 TASIGITFVTDEKHHRILFDKSDQALYVSKKSGKCRYYVY 743


>gi|302538187|ref|ZP_07290529.1| conserved hypothetical protein [Streptomyces sp. C]
 gi|302447082|gb|EFL18898.1| conserved hypothetical protein [Streptomyces sp. C]
          Length = 529

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 12/169 (7%)

Query: 107 DCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GL N + F   L     G    +  + + D+D FK +ND+ GH  GD+++  ++D+
Sbjct: 94  DALTGLPNRTLFFERLEKALGGPPGSRFGLCYLDLDGFKTVNDSLGHSAGDRLLVEVADR 153

Query: 162 LV-VVFGTPMFVGRLGGEEFAA---AALGSSEQEAAILANDLRKIIENSQINIS-SGPSI 216
           L     G    V RLGG+EF A   +  GS E     + +   +I+      I   G  +
Sbjct: 154 LQSCATGPGEVVARLGGDEFVALTTSPAGSGEDPGEKVTDLAVRILSALSTPIRLEGREL 213

Query: 217 HITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDIENN 264
            +  S GI E C  E     + R AD  +Y AK +G NR   F+D E +
Sbjct: 214 SVRGSIGIVEGCAGERTPAEVLRSADITMYRAKAAGGNRFE-FADAEAD 261


>gi|300693325|ref|YP_003749298.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum PSI07]
 gi|299075362|emb|CBJ34656.1| putative signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum PSI07]
          Length = 895

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 91/171 (53%), Gaps = 12/171 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPV 150
           +Y ++  L   D L+GL N +AFI  L +        + ++++  +D+FK +N+  GH +
Sbjct: 462 TYEQLRLLETKDSLTGLPNRAAFIERLDARLALPSTGQAALLYVGLDHFKTVNEAMGHHI 521

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           G++V+   + ++    G    + RLGG++F  A    +   A  LA   +++++      
Sbjct: 522 GNQVLNVAAQRIRADVGQRALLARLGGDQFCVAI--DTPDRAETLA---QQVLDALAKPF 576

Query: 211 SSGP-SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           S G   +H++ S G+A         +T++ RA+ A+Y AK++GRNR+  +S
Sbjct: 577 SGGEREVHLSASIGVAMFPEDGSDAATLVSRAEAAMYRAKENGRNRMARYS 627


>gi|258620323|ref|ZP_05715361.1| PAS domain S-box/GGDEF domain protein [Vibrio mimicus VM573]
 gi|258587202|gb|EEW11913.1| PAS domain S-box/GGDEF domain protein [Vibrio mimicus VM573]
          Length = 684

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGS--YNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+GL N   F   L     NE  L +++ DID FK IND+ GH +GDKVI  ++ 
Sbjct: 256 AHIDSLTGLYNRHGFTKRLEQCIQNETPLVLLYLDIDNFKNINDSLGHHIGDKVIKEVAA 315

Query: 161 QLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           +L  +      +G LGG+EF          + A +LA+ +  +I N   ++    S  + 
Sbjct: 316 RLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLI-NQPFDLHHF-SKRLA 373

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +           ++  AD A+Y AK+ GRNR++ F+D  N   
Sbjct: 374 CSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEA 421


>gi|220911014|ref|YP_002486323.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Arthrobacter chlorophenolicus A6]
 gi|219857892|gb|ACL38234.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Arthrobacter chlorophenolicus A6]
          Length = 513

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 9/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L  ++ ++ +++  D L+GL N SA I +L +         E   I+  D+D FK IND+
Sbjct: 69  LHEAHLKMQKMAMQDPLTGLANRSALIDALRAALDADTASEEGPVILLMDLDAFKSINDS 128

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD+V+  +  ++         V RLGG+EFA      +  +AAI+ +  R +   
Sbjct: 129 MGHTAGDQVLITVGQRVRNAVRATDVVARLGGDEFAIVMPAVAPDQAAIVGH--RILAAL 186

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           S+     G S+    S G++     +    ++  AD A+Y +K  G+NR+  F 
Sbjct: 187 SEPIELPGKSVRCGASIGLSVGSPGQTPEEMLMEADVAMYASKAEGQNRLHRFE 240


>gi|157962824|ref|YP_001502858.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella pealeana ATCC 700345]
 gi|157847824|gb|ABV88323.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella pealeana ATCC 700345]
          Length = 1064

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 17/160 (10%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N    +  L        S  +  +++F D+DYFK++ND  GH +GD +++  +
Sbjct: 584 DTLTGLPNRRMLLDYLNAEILKSDSREQHFALMFLDLDYFKEVNDTLGHDMGDMLLSEAA 643

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA--AILANDLRKIIENSQINISSGPSIH 217
            +L         V RLGG+EF     G ++ +    +  + L +I E   +   +     
Sbjct: 644 KRLKACIRDSDVVARLGGDEFTIVLSGVTDIKGVDKVAKHILTRIAEPYNLGEETA---- 699

Query: 218 ITISAGIAERCHKEPISTI---IYRADQALYVAKKSGRNR 254
             ISA I    + +  STI   +  ADQA+Y AK  GRNR
Sbjct: 700 -YISASIGITLYPDDASTIEGLLKHADQAMYAAKDEGRNR 738


>gi|127511666|ref|YP_001092863.1| diguanylate cyclase with PAS/PAC sensor [Shewanella loihica PV-4]
 gi|126636961|gb|ABO22604.1| diguanylate cyclase with PAS/PAC sensor [Shewanella loihica PV-4]
          Length = 446

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 17/171 (9%)

Query: 97  YNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           ++++ +++  D L+GL N        S  I        +L ++F D++ FK IND+ GH 
Sbjct: 263 HHKLEKMAHQDPLTGLPNRLQLELRLSEAIREASQSGGRLGLIFIDLNQFKAINDSLGHQ 322

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-----AALGSSEQEAAILANDLRKIIE 204
           VGD+V+   + +L  + G+   V R+GG+EF        A    E+E A LA  L +   
Sbjct: 323 VGDRVLMTAATRLQSLKGSEDLVARIGGDEFVMLLPQWPADRPLEEEVARLAEALFERFA 382

Query: 205 NSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
              I    G    I  S G A    H   +  +++ ADQA+Y+AK  G N+
Sbjct: 383 EPVIQTGRG----IAASIGFAIYPDHAGHMDALLHVADQAMYIAKGRGDNQ 429


>gi|330975799|gb|EGH75865.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 748

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 21/167 (12%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N +  ++ L +         E+ +++F D+D FK +ND+ GH  GDK++  ++
Sbjct: 320 DELTSLFNRAYLMNELTTAFEIRDPRYERATVLFLDLDGFKVVNDSMGHLAGDKLLKAVA 379

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINIS---SGP 214
           ++L     +   + R+GG+EFA   +G  + E A+      K+ E   SQ++ +      
Sbjct: 380 NRLQTCVRSNDVLARIGGDEFAILLMGKDQPETAV------KMAERIVSQLHTAIQIENQ 433

Query: 215 SIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I I+ S GI  A   H +P   ++  AD A+Y AKK GR R   F+
Sbjct: 434 DIFISCSIGIVTAGDSHTKP-EELLRDADVAMYSAKKQGRGRWSIFN 479


>gi|291532069|emb|CBK97654.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain [Eubacterium
           siraeum 70/3]
          Length = 649

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 7/161 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++S+ +  D LS L N S F   L S  E     K++++F D+D FK IND FGH VGD+
Sbjct: 469 QLSERASYDFLSQLYNRSTFERELKSEIERSAHAKVAVLFIDVDDFKFINDRFGHSVGDE 528

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISS 212
           VI +++  +        F GR GG+EF        + +E   L+ DL   +     +  +
Sbjct: 529 VIKYVAGCIKQRVKGSGFAGRFGGDEFVLCITDPKQIEEIESLSLDLIDELYEGYHSELA 588

Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252
             SI++  S GIA    H +  + ++  AD+A+Y  KK+G+
Sbjct: 589 NVSINVKASIGIAFYPEHGDDSNKVVAAADEAMYFVKKNGK 629


>gi|229076562|ref|ZP_04209522.1| Sensory box protein [Bacillus cereus Rock4-18]
 gi|228706595|gb|EEL58808.1| Sensory box protein [Bacillus cereus Rock4-18]
          Length = 892

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 11/176 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F       +++  +    ++++F D+D FK+IND 
Sbjct: 453 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKTILNTAQTSANDVAVMFLDLDRFKKINDR 512

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIE 204
            GH VGD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  I+ 
Sbjct: 513 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPDMYSEKSAAFIAEQILTIL- 571

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           N    I     + +T S GIA    +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 572 NKPFFIKD-EELSVTPSIGIAMYPDYGTDVTELMKNADLAMYRAKANGKNRFVFFS 626


>gi|203284329|ref|YP_002222069.1| response regulatory protein [Borrelia duttonii Ly]
 gi|201083772|gb|ACH93363.1| response regulatory protein [Borrelia duttonii Ly]
          Length = 310

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 16/167 (9%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
             LSRID L+ + N   F             + + + +   DIDYFK+ NDN+GH  GD+
Sbjct: 144 KNLSRIDGLTQIPNRRFFTDKFAKSWMQALEHQDNVIVGMLDIDYFKKYNDNYGHTNGDE 203

Query: 154 VIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQE----AAILANDLRKIIENSQI 208
            +  ++  L  +     + V R GGEEF   ++  S +E     + L  D+R +     +
Sbjct: 204 CLKLIAKSLNRIAIKYKIDVARYGGEEFILFSVNKSLEEMIKIVSFLIEDIRNL---GIV 260

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
           +  S  S  +T+S G+AE+  ++   + II  AD  LY AK SGRN+
Sbjct: 261 HEYSDISHFVTVSIGLAEQVPQDSNFTNIIKLADDKLYEAKISGRNQ 307


>gi|187926846|ref|YP_001893191.1| diguanylate cyclase [Ralstonia pickettii 12J]
 gi|241665175|ref|YP_002983534.1| diguanylate cyclase [Ralstonia pickettii 12D]
 gi|187728600|gb|ACD29764.1| diguanylate cyclase [Ralstonia pickettii 12J]
 gi|240867202|gb|ACS64862.1| diguanylate cyclase [Ralstonia pickettii 12D]
          Length = 490

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 24/210 (11%)

Query: 46  ANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR 105
            N    ++  + F G E    ++  +V++++T       I+     E ++ Y     L +
Sbjct: 292 GNPLNIHLQFSVFPGRE----QDWDMVLLALT------DITARKKAESYLEY-----LGK 336

Query: 106 IDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
            D L+ L N S ++  +     K    ++++  D++  K +ND  GH  GD ++    + 
Sbjct: 337 HDVLTKLKNRSFYVDEVNRLERKGPFPVTVIMIDLNDLKTVNDQLGHAAGDALLRRAGEV 396

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-NSQINISSGPSIHITI 220
           L      P    R+GG+EFA    G+  Q+   L   LRK++E N+Q    SGPS+   +
Sbjct: 397 LAKAIDKPAHAARIGGDEFAVLMPGADAQDGEALMESLRKLVELNNQ--FYSGPSLGFAM 454

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKS 250
             G A     E +   +  AD A+Y  K++
Sbjct: 455 --GCATCQEGERLEEALREADVAMYEDKRT 482


>gi|94265222|ref|ZP_01288983.1| GGDEF:GAF [delta proteobacterium MLMS-1]
 gi|93454312|gb|EAT04622.1| GGDEF:GAF [delta proteobacterium MLMS-1]
          Length = 376

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 19/172 (11%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHP 149
           Y   S  +  D L+GL N     + L      +  EK  L+++  D+D+FKQ ND  GH 
Sbjct: 215 YEEKSAEAGQDVLTGLANRRQLNTELERDWATAQREKSSLAVIMLDLDHFKQYNDTHGHL 274

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+++  +   +           R GGEEF      + +  A  +A  LR+ +      
Sbjct: 275 AGDRLLREMGQIMRDCVRCEDLPVRYGGEEFLVLLRRAGDARAEAVAERLREAV------ 328

Query: 210 ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                   +T+S G+A   +   +P   ++ RAD+ALY AK+ GRNRV  +S
Sbjct: 329 ---AARTEVTVSLGVAGSNQNDHDPWQ-MVQRADEALYQAKQQGRNRVQVYS 376


>gi|332759276|gb|EGJ89584.1| protein gmr domain protein [Shigella flexneri 2747-71]
 gi|333005559|gb|EGK25077.1| protein gmr domain protein [Shigella flexneri K-218]
          Length = 289

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 64  SGTDITEERRTQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 123

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S    E  A+ + 
Sbjct: 124 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRIL 183

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR       I + +  S+ I++S       H    +TII  AD A+Y AK+ GR +  
Sbjct: 184 TRLRLPFRIGLIEVYTSCSVGISLSPE-----HGSDSATIIRHADTAMYTAKEGGRGQFC 238

Query: 257 CFS 259
            F+
Sbjct: 239 VFT 241


>gi|330466213|ref|YP_004403956.1| diguanylate cyclase/phosphodiesterase [Verrucosispora maris
           AB-18-032]
 gi|328809184|gb|AEB43356.1| diguanylate cyclase/phosphodiesterase [Verrucosispora maris
           AB-18-032]
          Length = 775

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 6/157 (3%)

Query: 102 QLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           QL+  D L+GL N    + +L    + +    ++  D+D FK +ND  GH VGD V+  +
Sbjct: 303 QLAHTDALTGLANRRGLLRALHGCAAADTPCMLLSLDLDGFKNVNDMRGHDVGDAVLVEV 362

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +L           RLGG+EFA    G    EA  +A  L K++  +      GP +  
Sbjct: 363 GQRLRANLRPGDLAARLGGDEFAVLMHGGP-AEAGAVAERLLKVLGGAYPQ-PEGP-VFC 419

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++S G+A       +  ++  AD AL  AK+ G+NR+
Sbjct: 420 SVSIGLATWADTPDVELLLRHADLALRYAKQRGKNRI 456


>gi|291570018|dbj|BAI92290.1| putative diguanylate cyclase [Arthrospira platensis NIES-39]
          Length = 336

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 15/172 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           +  L  +D L+ + N   F   L    E+       +S++  DIDYFK  ND +GH  GD
Sbjct: 162 LEMLVNLDQLTQISNRRRFDDFLQVEWERHYRVRLPISLIMLDIDYFKYYNDYYGHQAGD 221

Query: 153 ---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI- 208
              K +A + +Q   V  +   V R GGEEFA     +  + A  +A  +R  I++ Q+ 
Sbjct: 222 DCLKNVAQIINQ--NVDQSNALVARYGGEEFAVVLPETDLETAEAIAEKIRLAIQDKQLP 279

Query: 209 NISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I S  S ++++S G++ +   +   I T+I  AD ALY AK+ GRNRV  F
Sbjct: 280 HIQSKVSPYVSLSLGVSSQIPTYLTSIKTLIAAADAALYEAKQLGRNRVFSF 331


>gi|240138244|ref|YP_002962716.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           domains [Methylobacterium extorquens AM1]
 gi|240008213|gb|ACS39439.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           domains [Methylobacterium extorquens AM1]
          Length = 794

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 9/171 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           L+    +  +I  L+  D L+GL N ++F       + +  +   KL+++  D+D FK++
Sbjct: 350 LRARRQAERQIQFLAHHDALTGLANRASFGKRLDQEMRAADAGGRKLAVLCLDLDRFKEV 409

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH  GD ++  ++  +         + RLGG+EFA         EA  LA  + + 
Sbjct: 410 NDLFGHAAGDAMLEGVARIVSAELDDTQMMARLGGDEFAVLMPCGGPSEAGRLAERILEA 469

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           + + + + + GP I  +I   +     +E  + + Y AD ALY AK  GR 
Sbjct: 470 LRSGRAD-AGGPQIATSIGVALYPDDAQERAALLSY-ADTALYRAKSEGRG 518


>gi|222054508|ref|YP_002536870.1| diguanylate cyclase [Geobacter sp. FRC-32]
 gi|221563797|gb|ACM19769.1| diguanylate cyclase [Geobacter sp. FRC-32]
          Length = 364

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 90/176 (51%), Gaps = 14/176 (7%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHP 149
           + +N++ +L+  D L+GL N   F   L    E      LS++  D+D FK +ND FGH 
Sbjct: 162 LEFNKVKELAMRDGLTGLYNRRVFDEILSIEGELHKLMPLSLLLLDLDDFKLVNDTFGHA 221

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+A  +  L         V R GGEEFA     +   +A  +A  +R  +  S + 
Sbjct: 222 AGDQVLATFAAILRESCRGADLVARYGGEEFAVVLPATPSTKATEIAQRMR--MRFSAMT 279

Query: 210 IS-SGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +  G     T+S GIA  C     K PIS +++RAD ALY AK+ G+NRV   +D
Sbjct: 280 FAFGGQHFSQTVSIGIA--CTFDTAKIPISELVHRADNALYRAKREGKNRVCIHTD 333


>gi|167629923|ref|YP_001680422.1| predicted signal transduction domain protein [Heliobacterium
           modesticaldum Ice1]
 gi|167592663|gb|ABZ84411.1| predicted signal transduction domain protein [Heliobacterium
           modesticaldum Ice1]
          Length = 853

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
           RI   +  D L+ L N   FI  L     +       L+++F D+D FKQIND +GH +G
Sbjct: 384 RIKHQAYHDALTDLPNRLLFIDRLTQAIAQATRNCYMLAVLFLDLDRFKQINDTYGHALG 443

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQIN 209
           D ++  ++ +L         V RLGG+EF      +GS E  A +    L  +      +
Sbjct: 444 DLLLQGVAGRLRRAVRDSDTVARLGGDEFTILLPQIGSVEDAAKVAQKILASL--RQPWS 501

Query: 210 ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
               PS  IT S GIA      E   T+++ AD A+Y AK  GRN
Sbjct: 502 FEGIPSFCITTSIGIAVCPTDGEEAETLMHNADAAMYRAKAQGRN 546


>gi|153831606|ref|ZP_01984273.1| ggdef family protein and [Vibrio harveyi HY01]
 gi|148872116|gb|EDL70933.1| ggdef family protein and [Vibrio harveyi HY01]
          Length = 527

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 90/195 (46%), Gaps = 21/195 (10%)

Query: 75  SITISLLLGYISGSILKELFISY-NRISQLSR---IDCLSGLLNHSAFISSLGS---YNE 127
            + + L+L  I    LKE    + N ++QL +    D L+ L N       L     ++ 
Sbjct: 336 ELQLKLILSEIENKELKETTKQHKNTVAQLQQDVFTDPLTSLHNRRWLEVKLKDLLLHDT 395

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAA 183
             +++  DID+FK IND   H VGDK I  +S +L   F    F G    R GGEEF   
Sbjct: 396 PFALMVIDIDHFKSINDELSHLVGDKAIVNVSKELSGYF---KFRGSSCVRFGGEEFLVI 452

Query: 184 ALGSSEQEAAILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
              +   +A + A + R+ I      +I    G    +T+S GI      E      YRA
Sbjct: 453 LENTEVAKAEMHAENYRERIYQFGWHEILGERG----LTVSIGITLHREGENTQRTFYRA 508

Query: 241 DQALYVAKKSGRNRV 255
           D+ALY AK +GRN+V
Sbjct: 509 DKALYRAKANGRNQV 523


>gi|121591188|ref|ZP_01678492.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121546973|gb|EAX57120.1| GGDEF family protein [Vibrio cholerae 2740-80]
          Length = 412

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 23/168 (13%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+ +    A    L     K ++   D+D+FK+ ND +GH  GD V+  ++ +L  + 
Sbjct: 241 DPLTQIPGRQALDQDLKHIGRKFTLAMLDVDHFKKFNDTYGHDTGDDVLRLVASRLREIN 300

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---SSGPSIH------ 217
           G    V R GGEEF+    G   +E       LR+ IE+ ++ I   +  P  H      
Sbjct: 301 GKAR-VYRYGGEEFSIIYKGKLAKEVLPFIEALRQDIESYELVIRDTNQRPKSHAEGAKK 359

Query: 218 -----------ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
                      ITIS G+ +   ++ PI   +  AD ALY AK++GRN
Sbjct: 360 RSRKSNSDIVTITISIGVCDSELYRHPIEA-LKAADGALYKAKQAGRN 406


>gi|56478889|ref|YP_160478.1| signal transducer protein [Aromatoleum aromaticum EbN1]
 gi|56314932|emb|CAI09577.1| putative signal transducer protein with histidine kinase domain
           [Aromatoleum aromaticum EbN1]
          Length = 920

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 55/173 (31%), Positives = 85/173 (49%), Gaps = 15/173 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D L+ L N   F   L         +   L+++F D+D FK IND  GH  G
Sbjct: 481 RLQHLAHYDALTELPNRLLFRERLADMLVRAERHGNMLALLFIDLDGFKPINDTLGHAAG 540

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSEQEAAILANDLRKIIENSQIN 209
           D+++  ++++L           RLGG+EFA     L S E EA I+A ++   +E   I 
Sbjct: 541 DELLRRVAERLGGCVRASDTTARLGGDEFAVLLDELRSPE-EAGIIARNILDTLERPYI- 598

Query: 210 ISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++  P     ISA I   C+        T++ +AD A+Y AK+ G+NR   F+
Sbjct: 599 LAGQPQCQY-ISASIGIGCYPSDSLDAETLLRQADMAMYRAKQEGKNRYRFFA 650


>gi|254500087|ref|ZP_05112239.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222441385|gb|EEE48063.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 616

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 11/176 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           LF    ++++ ++ D L+GL N   F       +S+L       ++ + D+D FK +ND 
Sbjct: 167 LFQLAKKVAKEAKEDALTGLSNRRHFEVEFKSWVSNLKDAGSDFAVFYIDLDRFKSVNDT 226

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIE 204
           FGH  GD+++  ++D L  +      V R+GG+EF     LG S  + + LA+ +  + E
Sbjct: 227 FGHDAGDRLLISVADMLRRLTNETDLVARIGGDEFVVLRPLGQSALDISSLADAV--VQE 284

Query: 205 NSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                +  G S   + S G+A    + +    ++  AD ALY AK +G+ R   F+
Sbjct: 285 MHAPFVFEGKSTFCSASVGVAIANANMDAPERVVSDADTALYHAKTNGKGRWSFFT 340


>gi|213968309|ref|ZP_03396453.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
 gi|213926947|gb|EEB60498.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
          Length = 763

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 21/167 (12%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N +  ++ L         + E+ +++F D+D FK +ND+ GH  GD+++  ++
Sbjct: 335 DELTALFNRAYLMNELADAFSNPDHHYERATVLFLDLDGFKVVNDSMGHLAGDQLLKRVA 394

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINIS---SGP 214
           ++L         + R+GG+EFA   +G  + E A+      K+ E   SQ++ +    G 
Sbjct: 395 NRLQNCVRANDVLARIGGDEFAILLVGKDQPETAV------KMAERIVSQLHAAIEIEGQ 448

Query: 215 SIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I I+ S GI  A   H +P   ++  AD A+Y AKK GR R   F+
Sbjct: 449 DIFISCSIGIVTAGEGHSKP-EDLLRDADVAMYSAKKQGRGRWSLFN 494


>gi|163782894|ref|ZP_02177890.1| hypothetical protein HG1285_16201 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882015|gb|EDP75523.1| hypothetical protein HG1285_16201 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 846

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 96/173 (55%), Gaps = 11/173 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
           S  RIS L+  D L+GL N + FI+ L        ++ +++ ++  DID+FK++N+  GH
Sbjct: 409 SEERISYLTLNDPLTGLPNRTNFINRLNEALSRAKAHGDEVGLLLIDIDHFKELNEALGH 468

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+V+  ++ ++  V  +  F+ R+GG+EF      +SE+    +   +++I++    
Sbjct: 469 TVGDEVLKEVARRIREVVRSSDFLARVGGDEFGVIV--NSEEARNAIDKLIKRILKQFSK 526

Query: 209 NIS-SGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFS 259
            I  +G S+ IT+S G +        S I++  A  ++  AK+ G NR+V FS
Sbjct: 527 PIPVNGHSVFITLSFGGSIFPQDVDNSEILFSNAMASVEKAKELGGNRLVMFS 579


>gi|157375530|ref|YP_001474130.1| signal transduction protein [Shewanella sediminis HAW-EB3]
 gi|157317904|gb|ABV37002.1| signal transduction protein containing a membrane domain, an EAL
           and a GGDEF domain [Shewanella sediminis HAW-EB3]
          Length = 817

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/190 (34%), Positives = 94/190 (49%), Gaps = 26/190 (13%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144
           +LF S  +I +L+  D L+GL N   F   L    E       +L+++F D+D FK IND
Sbjct: 363 KLFKSNEKIRELAFNDPLTGLPNRFMFTKHLNLSLESAKCDRGQLAVMFIDLDNFKHIND 422

Query: 145 NFGHPVGDKVIAFLSDQL---------VVVFGTPMFVGRLGGEEFAAAALGS--SEQEAA 193
           + GH  GD+++  + D+L            F     V RLGG+EF    LG   S   A 
Sbjct: 423 SLGHQSGDQLLHEIGDRLHRNLRSKDFCEHFSDSDMVARLGGDEF-TVFLGELPSINIAE 481

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKS 250
            +A  + +II  SQ  + SG S +I+ S GIA  C+ +       +I  AD A+Y AKK 
Sbjct: 482 KVAKRILEII--SQPILLSGKSYYISASIGIA--CYPQNGVTTQELIKNADIAMYHAKKK 537

Query: 251 GRNRVVCFSD 260
           G+     FSD
Sbjct: 538 GKGGYQHFSD 547


>gi|320155772|ref|YP_004188151.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
 gi|319931084|gb|ADV85948.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
          Length = 350

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 82/169 (48%), Gaps = 8/169 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           ++LKE   S  ++ Q+S  D L+ L N       L + N+   IV  DID FK+IND +G
Sbjct: 182 ALLKE---SNAKLQQISVTDALTQLPNRLYIEEFLINSNQVHWIVILDIDDFKKINDRYG 238

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGDKV+  ++ ++    G      R GGEEF  A      QE  ++   + + ++   
Sbjct: 239 HDVGDKVLQIVAQKIESCVGGNGVACRWGGEEFLMAFY---LQEIDVIEGKIFR-LQQEI 294

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                G    IT S G A    K        +AD+ALY AKK+G+N  V
Sbjct: 295 ATFEFGLRSPITFSCGGAPHQPKH-YRKAFRQADEALYRAKKAGKNSFV 342


>gi|294340737|emb|CAZ89129.1| conserved hypothetical protein; putative Adenylyl and guanylyl
           cyclase catalytic, GGDEF, Response regulator receiver
           and CheY-like domains [Thiomonas sp. 3As]
          Length = 632

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 14/166 (8%)

Query: 102 QLSRIDCLSGLLNH---SAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q +  D L+G+ N     AF+  L     +  + L+ + FD+D FK+IND  GH VGD+ 
Sbjct: 463 QAAGTDELTGVGNRRALDAFLPPLFAQAAAEGQPLACLMFDLDEFKRINDRLGHDVGDQA 522

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +   L        FV R+GGEEF      ++E+ A  +A  +R  I   Q ++    
Sbjct: 523 LRAVGRVLRQQSRGMDFVARVGGEEFLMLCPQTTEEAAMRVAERIRAAIAVPQADLPP-- 580

Query: 215 SIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              +++S G+          +++I  ADQAL  AK+ GRNR VC +
Sbjct: 581 ---LSVSVGVALGAAAFADAASLIRAADQALLQAKRLGRNR-VCLA 622


>gi|226310934|ref|YP_002770828.1| hypothetical protein BBR47_13470 [Brevibacillus brevis NBRC 100599]
 gi|226093882|dbj|BAH42324.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 404

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 6/168 (3%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           Y R+ Q+S  D L+G+ N+ AF   L       N  +S++  D D  K +ND+FGH  GD
Sbjct: 236 YERMYQMSFQDELTGIANYRAFHRDLEKLLSEENASVSLIMLDSDSLKAVNDHFGHHAGD 295

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            +I  +++ +  V G      R  G+EF     G+S + A   A+ +R+ +    +    
Sbjct: 296 ALIKQIAEAMKEVAGPEDTAYRYAGDEFMLLCPGASMEMAEEKASAIREYLRLRPLT-QD 354

Query: 213 GPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259
              I I +S GIA        +  + R AD+ALY +K+ G+N    ++
Sbjct: 355 DCCILIAVSVGIARYPQDANTADGLKRAADEALYRSKRKGKNCTTVYA 402


>gi|37676477|ref|NP_936873.1| putative regulatory components of sensory transduction system
           [Vibrio vulnificus YJ016]
 gi|320158649|ref|YP_004191027.1| response regulator [Vibrio vulnificus MO6-24/O]
 gi|326424215|ref|NP_762292.2| response regulator [Vibrio vulnificus CMCP6]
 gi|37201019|dbj|BAC96843.1| putative regulatory components of sensory transduction system
           [Vibrio vulnificus YJ016]
 gi|319933961|gb|ADV88824.1| response regulator [Vibrio vulnificus MO6-24/O]
 gi|319999600|gb|AAO07282.2| Response regulator [Vibrio vulnificus CMCP6]
          Length = 319

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 73/140 (52%), Gaps = 4/140 (2%)

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFA 181
           G +   +S++  DID FK  NDN+GH  GDK +   ++ +  +F      VGR GGEEF 
Sbjct: 177 GRHRLPISVILLDIDNFKLFNDNYGHIEGDKCLQATANTIKSLFQRNADCVGRYGGEEFV 236

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAE--RCHKEPISTIIY 238
               GS  ++A   A  + K + + S  +  S  S  +T+S G+       +E + TI  
Sbjct: 237 VLLGGSDAEQAVKAAERIHKAVADLSYPHAFSAVSDVVTLSQGVYTFIPNGREELQTIYQ 296

Query: 239 RADQALYVAKKSGRNRVVCF 258
            AD+ALY AK  G+NR V F
Sbjct: 297 FADKALYQAKLEGKNRYVTF 316


>gi|17549376|ref|NP_522716.1| hypothetical protein RS05432 [Ralstonia solanacearum GMI1000]
 gi|17431629|emb|CAD18306.1| probable signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum GMI1000]
          Length = 915

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 11/165 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D L+GL N S FI+ L S  E+       L++ F D+D FK +ND  GH  G
Sbjct: 472 RLRHLASHDALTGLTNRSFFIAHLDSAIERARDESRELALFFLDLDRFKSVNDTAGHACG 531

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINI 210
           D ++   + +L    G    + RLGG+EF        E +  A LA  L   +      +
Sbjct: 532 DTLLQSAAARLTDCIGPGDVIARLGGDEFVILIEQRVEGKRIAQLAERLLAAMREPFDTV 591

Query: 211 SSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           +     ++ +S G+A   H     S ++  AD A+Y AK++GRNR
Sbjct: 592 NG--RYYLGVSIGVALYPHDGISGSDLLRSADAAMYRAKQNGRNR 634


>gi|237748749|ref|ZP_04579229.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacter formigenes OXCC13]
 gi|229380111|gb|EEO30202.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacter formigenes OXCC13]
          Length = 870

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 15/158 (9%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N    +  LG         + + +++F D+D FK IND  GH +GD+++  ++
Sbjct: 449 DFLTGLPNRILLLDRLGQTLIAAERNHRRAAVMFLDLDKFKHINDTLGHAIGDRLLQQVA 508

Query: 160 DQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            +L         V R GG+EF    + +G ++  A +  N +  + +N QI       + 
Sbjct: 509 QRLTQCVRKNDTVSRQGGDEFVILLSDIGEADDAAMVANNIMHTLSQNYQI---ENYEMS 565

Query: 218 ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
           IT S GIA      KE I T++  AD A+Y AK++GRN
Sbjct: 566 ITSSIGIALFPEDGKE-IDTLLKNADTAMYHAKENGRN 602


>gi|169634719|ref|YP_001708455.1| putative GGDEF family protein [Acinetobacter baumannii SDF]
 gi|169153511|emb|CAP02672.1| putative GGDEF family protein [Acinetobacter baumannii]
          Length = 593

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 9/164 (5%)

Query: 99  RISQLSRIDCLSGLLNH---SAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152
           ++  ++  D L+G+ N    S ++  + SY +K S   ++  DID FK +ND +GH VGD
Sbjct: 430 QLKNIANTDPLTGVSNRLALSEYLKIVESYPQKFSQTCLMIIDIDRFKHVNDQYGHMVGD 489

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +VI  ++DQL         + R GG+EF          +A +LA  +R  I   +I++SS
Sbjct: 490 QVIWRIADQLKANVRASDLIVRYGGDEFLILLEQVQFLDARLLAEKIRIAISLEEIDLSS 549

Query: 213 GPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                H+++S G A          ++  AD++L  AK  GRN V
Sbjct: 550 TQEKSHVSVSIGFA--IGATSWMELLENADRSLLRAKARGRNVV 591


>gi|160936542|ref|ZP_02083909.1| hypothetical protein CLOBOL_01432 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440333|gb|EDP18078.1| hypothetical protein CLOBOL_01432 [Clostridium bolteae ATCC
           BAA-613]
          Length = 652

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 10/172 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISS-----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           R+  +S+ D L+GL N S           G+ +   ++VF D+D  K +NDN+GH +GD 
Sbjct: 478 RLRNISQHDQLTGLYNASYLKKEGQKILDGNRSRVNALVFCDLDNLKFVNDNYGHEMGDH 537

Query: 154 VIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-NSQINIS 211
            +  ++D L  + FG      RL G+EF     G S+++   + + +R   E  S I + 
Sbjct: 538 YLKAMADLLTGIAFGEQCMAVRLSGDEFVLFFYGYSDRKT--IEDKVRSGYEGRSSIQLP 595

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            G S  I  S G+A  +   E +  +I RAD+A+Y  K++ +N +  +   +
Sbjct: 596 DGTSRRINASIGLAFAQRESERMEDLINRADRAMYRVKRTEKNGIAIYDKTD 647


>gi|37680572|ref|NP_935181.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37199320|dbj|BAC95152.1| GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 354

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 82/169 (48%), Gaps = 8/169 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           ++LKE   S  ++ Q+S  D L+ L N       L + N+   IV  DID FK+IND +G
Sbjct: 186 ALLKE---SNAKLQQISVTDALTQLPNRLYIEEFLINSNQVHWIVILDIDDFKKINDRYG 242

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGDKV+  ++ ++    G      R GGEEF  A      QE  ++   + + ++   
Sbjct: 243 HDVGDKVLQIVAQKIESCVGGNGVACRWGGEEFLMAFY---LQEIDVIEGKIFR-LQQEI 298

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                G    IT S G A    K        +AD+ALY AKK+G+N  V
Sbjct: 299 ATFEFGLRSPITFSCGGAPHQPKH-YRKAFRQADEALYRAKKAGKNSFV 346


>gi|120555164|ref|YP_959515.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Marinobacter aquaeolei VT8]
 gi|120325013|gb|ABM19328.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Marinobacter aquaeolei VT8]
          Length = 908

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 13/184 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L +L  + + + +L+  D L+GL N   F   L           E  +++F D+D FK+I
Sbjct: 462 LTQLKAAQSELHRLAFYDPLTGLANRQLFRDRLNHVVRRSRRSGEAAALMFLDLDGFKRI 521

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLR 200
           ND  GH  GD+++  ++  L         V RLGG+EF    + +  SE    +  N LR
Sbjct: 522 NDTLGHDAGDELLRQVAQWLEGCVREEDSVARLGGDEFVVLLSRISGSEAAGKVAENILR 581

Query: 201 KIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++ +  ++N      + +T+S GI    H  E    ++  AD A+Y AK+ GRN    F+
Sbjct: 582 RLCQRIRLN---DHEVGVTVSIGITMIPHDSEDAGALMKYADLAMYRAKELGRNTYQFFT 638

Query: 260 DIEN 263
              N
Sbjct: 639 PAMN 642


>gi|115524468|ref|YP_781379.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
 gi|115518415|gb|ABJ06399.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
          Length = 666

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 78/157 (49%), Gaps = 5/157 (3%)

Query: 100 ISQLSRIDCLSGLLNHSAF--ISSLGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           + +++R D L+GL N S F  IS     + K L+ V  DID FK IND+ GH VGD VI 
Sbjct: 221 LERIARTDPLTGLANRSHFQDISQSACRSGKGLAFVLIDIDNFKTINDSRGHSVGDGVIR 280

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +++ L           RLGG+EF     G      A+   +         IN+ +G ++
Sbjct: 281 SVANLLRSACNEHDVAVRLGGDEFVVILQGQDTSARAVTLAERLSTAMRMPINV-AGNAL 339

Query: 217 HITISAGIAERCHKE-PISTIIYRADQALYVAKKSGR 252
             + S GIA +   E  +  ++ RAD ALY AK  GR
Sbjct: 340 FTSCSIGIAAQEDGEIDVDDLLARADVALYRAKDEGR 376


>gi|325970934|ref|YP_004247125.1| diguanylate cyclase [Spirochaeta sp. Buddy]
 gi|324026172|gb|ADY12931.1| diguanylate cyclase [Spirochaeta sp. Buddy]
          Length = 404

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 77/159 (48%), Gaps = 11/159 (6%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVF------FDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GLLN +   S L S  +++ + F       DID FK IND +GH  GD V+  L+ 
Sbjct: 246 DGLTGLLNRNTTDSYLSSVLDQMEVSFQCMVNMVDIDNFKAINDTYGHETGDLVLVNLAA 305

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG---PSIH 217
               +      VGR GG+EF       S +EA  L   L   +  S  + SS    P++ 
Sbjct: 306 IFSRIIRKQDTVGRWGGDEFLFILQDVSIEEAPELIRRLHDGV--STFDWSSNLHIPNLK 363

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           I IS+G      KE    I+   D  LY AK++GRN+ V
Sbjct: 364 IGISSGYTFCSGKESKKDILRTIDVHLYTAKQNGRNQSV 402


>gi|311280103|ref|YP_003942334.1| diguanylate cyclase [Enterobacter cloacae SCF1]
 gi|308749298|gb|ADO49050.1| diguanylate cyclase [Enterobacter cloacae SCF1]
          Length = 457

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 88/185 (47%), Gaps = 20/185 (10%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF-----DIDYFKQI 142
           +++  +F + N IS+ +  D L+ + N   F +    + ++ +   +     DID FK+I
Sbjct: 264 TLMYSIFHTLNNISEKAFHDPLTAIYNRRFFFTEFDRFLQEWNFTPYCAMIVDIDRFKRI 323

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH VGDK +  ++  +           R+GGEEF   +   + +E A      + I
Sbjct: 324 NDRYGHEVGDKTLIAVARIIADTLRNEDLFARIGGEEFGILSQNINNREMA------KNI 377

Query: 203 IENSQINISSGPSIH--------ITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRN 253
            E  +INI    SI         +T+  G+      +  S+   R AD ALY AK SGRN
Sbjct: 378 AEKIRINIERNTSIDGYYNLPESMTVCIGVYFSTPIKHTSSEAMRLADIALYQAKNSGRN 437

Query: 254 RVVCF 258
           +V+ +
Sbjct: 438 KVIVY 442


>gi|295105446|emb|CBL02990.1| diguanylate cyclase (GGDEF) domain [Faecalibacterium prausnitzii
           SL3/3]
          Length = 604

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 7/160 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  L+  D L+GLLN   F   ++ L  +++  ++ + D+D FK +ND +GH VGD+++ 
Sbjct: 440 LQSLANTDGLTGLLNKRYFDRVLTVLEQHSQPFALFYMDLDRFKPVNDTYGHDVGDELLK 499

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPS 215
            +S +L     +  +  RLGG+EFA   LGS + EA   A+ +  I E   +     G +
Sbjct: 500 GVSQRLQGCIRSRDYAFRLGGDEFALLLLGSMKPEAC--ASKMNMICEMVAVPYEIDGNT 557

Query: 216 IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + +  S G A        +  + Y ADQ +Y  K++   R
Sbjct: 558 VSVGASCGYALYPAESVDVQQVRYIADQRMYENKQANHAR 597


>gi|293604739|ref|ZP_06687139.1| diguanylate cyclase [Achromobacter piechaudii ATCC 43553]
 gi|292816908|gb|EFF75989.1| diguanylate cyclase [Achromobacter piechaudii ATCC 43553]
          Length = 413

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 1/130 (0%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              L+++  DID+FK IND +GH  GD  +   S             GRLGGEEF    +
Sbjct: 249 GSPLAVLVLDIDHFKSINDRYGHAAGDTALRHFSKVAQNAVRASDRFGRLGGEEFVLLMV 308

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
                 A + A  +   + ++ + +  G  + +T S G+A     +    I+ RAD ALY
Sbjct: 309 DCDPARALVHAQRVCDALRDTPLYL-QGMEVPLTASGGLATYQPGDSADVILARADVALY 367

Query: 246 VAKKSGRNRV 255
            AK+ GR+RV
Sbjct: 368 RAKEQGRDRV 377


>gi|242277591|ref|YP_002989720.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
 gi|242120485|gb|ACS78181.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
          Length = 334

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 24/173 (13%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R++ LS  D L+GL N   F        S   S    L ++  D D+FK++ND +GH  G
Sbjct: 154 RLNLLSYTDHLTGLFNKRFFELKLVETCSRCISCKTPLHLMLIDCDHFKEVNDVYGHQEG 213

Query: 152 DKVIAFLSDQLV---VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           DK++A L  Q++   V  GT  F  R GG+EF A  +G        +A  +R     +QI
Sbjct: 214 DKLLAELG-QIISSSVRNGTD-FPFRFGGDEFGAILVGVDSTRCEQIAERIRTRF--AQI 269

Query: 209 NISSGPSIHITISAGIAERCHK--EP---ISTIIYRADQALYVAKKSGRNRVV 256
            +        ++S GI++ C++  +P      +I  AD+ALY AK +GR++V+
Sbjct: 270 KVGQA-----SLSIGISKLCYQAIDPEAEAEKLIASADKALYFAKNTGRDKVI 317


>gi|150260515|ref|ZP_01917243.1| putative exported protein [Yersinia pestis CA88-4125]
 gi|149289923|gb|EDM40000.1| putative exported protein [Yersinia pestis CA88-4125]
          Length = 425

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 11/168 (6%)

Query: 107 DCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N + F   L          E  +++F D D+FK +NDN+GH  GD V+  ++ 
Sbjct: 254 DSLTGLANRTFFEGRLSRTLNDCQPGEHTAVLFLDGDHFKDVNDNYGHAAGDLVLTTIAV 313

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI--SSGPSIHI 218
           ++  +      V RLGG+EFA         +  +   D   II++  + I  + G  I +
Sbjct: 314 RIRALLRETDLVARLGGDEFAVLLTPIHNLDDVLTIAD--HIIDSMALPIILAEGCEITV 371

Query: 219 TISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           ++S GIA    H +    ++ RAD+A+Y AKK+ R+    F+   N T
Sbjct: 372 SLSIGIAVYPDHAQTPEKLLQRADEAMYQAKKNFRSGKRIFAYQPNTT 419


>gi|118590815|ref|ZP_01548216.1| hypothetical protein SIAM614_06593 [Stappia aggregata IAM 12614]
 gi|118436791|gb|EAV43431.1| hypothetical protein SIAM614_06593 [Stappia aggregata IAM 12614]
          Length = 495

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 24/179 (13%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--SYNEK----LSIVFFDIDYFKQIN 143
           LK    +++    L++ D L+GL N    + +    +Y  K     +++  D+D FK IN
Sbjct: 47  LKARSSAHSEALALAQHDPLTGLPNRRRLLEAFADLTYEVKPDCFRAVMMLDLDGFKPIN 106

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD ++   +D+L    G    V RLGG+EF  A +    +E + +A   R++I
Sbjct: 107 DVYGHAFGDNLLRSFADRLAETLGKDGIVARLGGDEF--AIVSPVFKEKSDVAGFARRLI 164

Query: 204 E---------NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
                     N QI+I SG  I +    G A       I+ ++ RAD ALY AK SGR+
Sbjct: 165 TRINDRFEFGNRQISIGSGIGIALYPHDGHA-------ITELLRRADIALYRAKSSGRS 216


>gi|28211476|ref|NP_782420.1| signaling protein [Clostridium tetani E88]
 gi|28203917|gb|AAO36357.1| signaling protein [Clostridium tetani E88]
          Length = 449

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 9/168 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS----YNEK---LSIVFFDIDYFKQINDNFGH 148
            Y R+  ++  D L+ L N    ++ L S    + EK    ++   DIDYFK +ND +GH
Sbjct: 279 EYKRLESIAITDPLTNLYNRYFTMNYLQSQFLRFQEKEVNFNLAMGDIDYFKNVNDTYGH 338

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+  ++  L         V R GGEEF       S +E     N++   IE   I
Sbjct: 339 EAGDYVLEAVAKLLKGNIRKTDLVARWGGEEFIIIFPNISGEEVIKNLNNIIYKIERQDI 398

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255
               G ++ +TIS G++     +      + RAD+ALY +K+SGRN+V
Sbjct: 399 EY-KGETLKVTISFGVSHFLKSDNHYQEALVRADKALYNSKRSGRNQV 445


>gi|332760383|gb|EGJ90673.1| protein gmr domain protein [Shigella flexneri K-671]
 gi|333019118|gb|EGK38408.1| protein gmr domain protein [Shigella flexneri K-304]
          Length = 289

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 64  SGTDITEERRTQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 123

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S    E  A+ + 
Sbjct: 124 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRIL 183

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR       I + +  S+ I++S       H    +TII  AD A+Y AK+ GR +  
Sbjct: 184 TRLRLPFRIGLIEVYTSCSVGISLSPE-----HGSDSATIIRHADTAMYTAKEGGRGQFC 238

Query: 257 CFS 259
            F+
Sbjct: 239 VFT 241


>gi|330939046|gb|EGH42502.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 748

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 21/167 (12%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N +  ++ L +         E+ +++F D+D FK +ND+ GH  GDK++  ++
Sbjct: 320 DELTSLFNRAYLMNELTTAFEIRDPRYERATVLFLDLDGFKVVNDSMGHLAGDKLLKAVA 379

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINIS---SGP 214
           ++L     +   + R+GG+EFA   +G  + E A+      K+ E   SQ++ +      
Sbjct: 380 NRLQTCVRSNDVLARIGGDEFAILLMGKDQPETAV------KMAERIVSQLHTAIQIENQ 433

Query: 215 SIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I I+ S GI  A   H +P   ++  AD A+Y AKK GR R   F+
Sbjct: 434 DIFISCSIGIVTAGDSHTKP-EELLRDADVAMYSAKKQGRGRWSIFN 479


>gi|330820150|ref|YP_004349012.1| Diguanylate cyclase/phosphodiesterase [Burkholderia gladioli BSR3]
 gi|327372145|gb|AEA63500.1| Diguanylate cyclase/phosphodiesterase [Burkholderia gladioli BSR3]
          Length = 695

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 98/203 (48%), Gaps = 17/203 (8%)

Query: 65  LVENLSLVIISITI-SLLLGYIS--GSILKELFISYN-RISQLSRIDCLSGLLNHSAF-- 118
           L   ++L   +I I +LLL  I    S L     S N  I +L+ +D L+GL N      
Sbjct: 216 LATTVTLFTFAILIATLLLSRIDMRNSRLARAVSSLNGEIVRLATLDTLTGLPNRGTLNA 275

Query: 119 -----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                I          +++F D+D FK IND+ GH VGD+V+   + +L         V 
Sbjct: 276 RMVEAIDRARRRQTGFAVLFMDLDGFKAINDSLGHSVGDQVLVSFAQRLRGCVRAADTVA 335

Query: 174 RLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINI-SSGPSIHITISAGIAERCHK- 230
           RLGG+EF        S Q+A ++A    K++E+++    S+   + +T S GIA      
Sbjct: 336 RLGGDEFVVLVEPLVSPQDARLVAE---KVLEHTRDGAWSADTPLPVTPSIGIALYPRDG 392

Query: 231 EPISTIIYRADQALYVAKKSGRN 253
           E + T++  AD A+Y AK+ GR 
Sbjct: 393 ETVDTLLKHADAAMYEAKRGGRG 415


>gi|294497702|ref|YP_003561402.1| response regulator diguanylate cyclase/phosphodiesterase [Bacillus
           megaterium QM B1551]
 gi|294347639|gb|ADE67968.1| response regulator diguanylate cyclase/phosphodiesterase [Bacillus
           megaterium QM B1551]
          Length = 535

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 9/161 (5%)

Query: 107 DCLSGLLN-------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G  N       +S  +SS         +   D+D+FK+IND +GH +GD+V+    
Sbjct: 237 DELTGAYNRTYLKEIYSQQLSSYDRLKAPFCLAILDLDFFKRINDQYGHLMGDRVLQAFV 296

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + +         + R GGEEF      ++ +EA  + N L  +    ++      S + +
Sbjct: 297 EYMKHEIRPTDHIFRYGGEEFILLLPKTNIKEAETVLNRLLDLF-VKKVFTHQSNSFYCS 355

Query: 220 ISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            S G+ E  + E P+   +++AD+ALY+AK+SGR ++V  S
Sbjct: 356 FSGGVVEVHNTEWPLEKALHQADEALYIAKESGRQKIVASS 396


>gi|237799010|ref|ZP_04587471.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331021864|gb|EGI01921.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 779

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 93/191 (48%), Gaps = 16/191 (8%)

Query: 83  GYISGSILKELFISYNR--ISQLSRI---DCLSGLLNHSAFISSL-------GSYNEKLS 130
           G ISG++L    ++  R  I++LS     D L+GL+N S F   L       G  +    
Sbjct: 348 GVISGAVLVLHDMTQERQYIAELSWQAAHDPLTGLVNRSEFERRLQQVLDERGDGSGTHC 407

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F D+D FK +ND  GH  GD+++  L   L         + RLGG+EF    +     
Sbjct: 408 LMFLDLDQFKLVNDTGGHAAGDELLRQLCQALPQGLRDSDTLARLGGDEFGVLLVDCPAS 467

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAK 248
           +A  +A  LR+I+++    +  G     T+S G+       P++    +  AD A Y+AK
Sbjct: 468 KANDIAEALREIVQSLHF-MWKGRPFMTTVSIGLVH-LGDVPVTLEASLSAADMACYMAK 525

Query: 249 KSGRNRVVCFS 259
           + GRNRV  +S
Sbjct: 526 EKGRNRVQVYS 536


>gi|221215080|ref|ZP_03588047.1| diguanylate cyclase [Burkholderia multivorans CGD1]
 gi|221165016|gb|EED97495.1| diguanylate cyclase [Burkholderia multivorans CGD1]
          Length = 453

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S L EL  +  ++  ++  D ++G  N   FI+ +               ++  D+D FK
Sbjct: 276 SALLELRRTNQKLEYMAATDPMTGASNRRQFIAQVEREIGRAERDGTPFCLLALDLDNFK 335

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH +GD+V+  +  Q +        + R+GGEEF A       + A + A  +R
Sbjct: 336 HINDAYGHQIGDEVLRGVVRQCLDAIRPSGALARVGGEEFMALLPEMPLEGARMTAERVR 395

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             I  +   +     + +T+S G+A+       +  ++   D+ LY AK+ GRNRVV 
Sbjct: 396 SSIATAPFGLDF-KRVQVTVSVGVAQYGVDGSTVDALLRVVDERLYQAKREGRNRVVA 452


>gi|152995192|ref|YP_001340027.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
 gi|150836116|gb|ABR70092.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
          Length = 731

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 15/173 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY---NEKL----SIVFFDIDYFKQINDNFGHPVG 151
            + +L+  D L+GL N      SL      N++     + ++FD+D FK+IND  GH VG
Sbjct: 298 ELQELAYKDPLTGLPNRRFLQDSLPKTLHNNQRRKRISAFIYFDLDNFKRINDTIGHDVG 357

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS--SEQEAAILANDLRKIIENSQIN 209
           D+V+  + D+L  +      V RLGG+EF    LG    E++A+  AN   +I+E+ +  
Sbjct: 358 DQVLIIVGDRLNKLKAMSDLVVRLGGDEF-GILLGDIGDEKQASEQAN---RILESIRTP 413

Query: 210 ISSGPSIHI-TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           I      +I + S GIA    H   + TI+  AD ALY AK  G+N+   +++
Sbjct: 414 IKMDSREYILSTSLGIAMIPEHGYDLVTIMQNADMALYQAKLKGKNQYAFYTE 466


>gi|94500919|ref|ZP_01307444.1| hypothetical protein RED65_13812 [Oceanobacter sp. RED65]
 gi|94426859|gb|EAT11842.1| hypothetical protein RED65_13812 [Oceanobacter sp. RED65]
          Length = 664

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 17/174 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           NR+ Q++  D L+GL N + F       IS     N+K++++F D+D FK IND +GH +
Sbjct: 491 NRLQQMAHHDALTGLANRTLFENQLNQAISRADRQNKKVALLFIDLDRFKPINDEYGHEM 550

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-----AALGSSEQEAAILANDLRKIIEN 205
           GDK++  ++++L         V R+GG+EF       + + S E  A  + + L   I  
Sbjct: 551 GDKLLRIVAERLESRTREHDTVARIGGDEFVMIIEDISDMNSIESVAQQVVSLLCSPIVI 610

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I IS G SI I++        H      +   AD A+Y AK     R   F+
Sbjct: 611 DGIEISVGCSIGISLYPD-----HGTSSIELTRSADIAMYAAKSQSEKRFYIFT 659


>gi|28868556|ref|NP_791175.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28851794|gb|AAO54870.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 763

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 21/167 (12%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N +  ++ L         + E+ +++F D+D FK +ND+ GH  GD+++  ++
Sbjct: 335 DELTALFNRAYLMNELADAFSNPDHHYERATVLFLDLDGFKVVNDSMGHLAGDQLLKRVA 394

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINIS---SGP 214
           ++L         + R+GG+EFA   +G  + E A+      K+ E   SQ++ +    G 
Sbjct: 395 NRLQNCVRANDVLARIGGDEFAILLVGKDQPETAV------KMAERIVSQLHAAIEIEGQ 448

Query: 215 SIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I I+ S GI  A   H +P   ++  AD A+Y AKK GR R   F+
Sbjct: 449 DIFISCSIGIVTAGEGHSKP-EDLLRDADVAMYSAKKQGRGRWSLFN 494


>gi|39997114|ref|NP_953065.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
 gi|39984004|gb|AAR35392.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
 gi|298506127|gb|ADI84850.1| sensor diguanylate cyclase/phosphodiesterase, PAS domain-containing
           [Geobacter sulfurreducens KN400]
          Length = 799

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 19/169 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +L+  D L+GL N   F+  L         Y   ++++F D+D FK IND  GHPV
Sbjct: 355 EQLYRLAHHDTLTGLPNRILFLDRLQQAKAHANRYRHHVALMFLDLDRFKIINDTLGHPV 414

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDK++  ++ +LV        V R+GG+EF    +     E      D++++ +    ++
Sbjct: 415 GDKLLQEVAKRLVDCVREVDTVARIGGDEFTVVLVNIDSVE------DVKRVAQKILKSL 468

Query: 211 S-----SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
           S         ++IT S GIA      E    ++ +AD A+Y AK  GRN
Sbjct: 469 SVPFMVDSFELYITTSIGIALYPGDDENPDNLVKKADIAMYHAKGEGRN 517


>gi|326796657|ref|YP_004314477.1| diguanylate cyclase with PAS/PAC sensor [Marinomonas mediterranea
           MMB-1]
 gi|326547421|gb|ADZ92641.1| diguanylate cyclase with PAS/PAC sensor [Marinomonas mediterranea
           MMB-1]
          Length = 413

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 8/168 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ + S  D L+G  N  +F   +        +    LS++  D+D+FK+IND +GH  G
Sbjct: 242 KLEKASATDQLTGAANRRSFDQVIHEEWKVAKASGSPLSLMSLDLDHFKRINDQYGHSAG 301

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D  +  + D L    G    + R+GGEEF      +  + A   A  LR  +E     I 
Sbjct: 302 DTALKLIVDWLQAGLGENDSLYRIGGEEFYVLMKETDLKSALEKAESLRSGLEKHTFMIQ 361

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I +T+S G+ +   +  +  I+   D+ALY AK +GRN+V   S
Sbjct: 362 DN-EIKLTLSIGVIQLGMEIILDQILELIDRALYEAKNNGRNQVRAVS 408


>gi|284988698|ref|YP_003407252.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Geodermatophilus obscurus DSM 43160]
 gi|284061943|gb|ADB72881.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geodermatophilus obscurus DSM 43160]
          Length = 697

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 13/161 (8%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+GL N +  +  +G   E      +++F D+D FK +ND+ GH VGD+++  +  +L
Sbjct: 262 DDLTGLPNRARLLELIGEALEPGRGPAALLFLDLDGFKTVNDSLGHHVGDELLRRVGGRL 321

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR----KIIENSQINISSGPSIHI 218
                    VGRLG ++F   A      EAA LA  L+    +      I++    SI +
Sbjct: 322 AEQVRPGDAVGRLGADQFLVLARDCDTAEAASLAFRLQSSFSRPFHAEGISVPLSASIGV 381

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++   A+R H+     ++  AD A + AK +GR+RV  FS
Sbjct: 382 AVAQPGADRAHQ-----LLSDADTAAFAAKGAGRDRVHVFS 417


>gi|218440454|ref|YP_002378783.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp. PCC
            7424]
 gi|218173182|gb|ACK71915.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp. PCC
            7424]
          Length = 1079

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/136 (35%), Positives = 70/136 (51%), Gaps = 9/136 (6%)

Query: 129  LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAA 184
            + ++  D+D+FK+ ND FGH  GD V+  +S+ L++   +     R GGEEF      A+
Sbjct: 943  VGLIMIDVDHFKEFNDTFGHKAGDLVLQEVSNFLMINVRSGDIACRYGGEEFLLILPEAS 1002

Query: 185  LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQA 243
            L  S+Q     A  +R+ I+             +T+S G+A    H      +I  AD A
Sbjct: 1003 LTDSQQR----AEQIRQGIKQLDFKRYDQSFRSVTVSVGVASFPDHGTNNDQLIQAADTA 1058

Query: 244  LYVAKKSGRNRVVCFS 259
            LY AKK GR+RVV FS
Sbjct: 1059 LYQAKKQGRDRVVVFS 1074


>gi|188584249|ref|YP_001927694.1| diguanylate cyclase [Methylobacterium populi BJ001]
 gi|179347747|gb|ACB83159.1| diguanylate cyclase [Methylobacterium populi BJ001]
          Length = 367

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 80/161 (49%), Gaps = 11/161 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           + + +R D L+G  N  A +++L         +++  D+D+FK IND  GH  GD+V+  
Sbjct: 214 LREAARRDFLTGAWNR-AGLAALAPRLLRPGTAVIVLDVDHFKAINDGHGHAAGDRVLTA 272

Query: 158 LSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
           L+  +  V   P   + RLGG+EF       S  EA  +A+++R+I        +     
Sbjct: 273 LAACVQTVIPEPDASLVRLGGDEFVLLVADRSPAEARWIADEIRQIAGRGNGLPA----- 327

Query: 217 HITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
             TIS GIA     E   S  I RAD++LY AK  GR+R  
Sbjct: 328 -WTISLGIAAVEPGETDFSAAIERADRSLYRAKAEGRDRAA 367


>gi|92114679|ref|YP_574607.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Chromohalobacter salexigens DSM 3043]
 gi|91797769|gb|ABE59908.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Chromohalobacter salexigens DSM 3043]
          Length = 836

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 19/205 (9%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR---IDCLSGLLNHSAF--- 118
           L+EN ++  I      +  YI+  + +++   + + ++L R    D L+GL N   F   
Sbjct: 348 LIENATISAIHDADGTITHYIA--VFRDITQKHLKQARLERRAIYDPLTGLFNREHFGDA 405

Query: 119 ----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
               +S L      ++++F D+D FK +ND +GH  GD  +  ++ +L     +   V R
Sbjct: 406 LENLLSGLSYTGIGIAVLFIDLDDFKPVNDTYGHAAGDDALVTIAQRLKQQTRSTDLVAR 465

Query: 175 LGGEEF--AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHK 230
           LGG+EF  A A + S+E+   +    L  +I  S I +    +I ++ S GIA  +    
Sbjct: 466 LGGDEFVIALAGMRSAEKAEKVAFKILDDLI--SPIALRGEHAITLSASVGIAYTDDSRF 523

Query: 231 EPISTIIYRADQALYVAKKSGRNRV 255
            P   +I  AD A+Y AK  G+N+V
Sbjct: 524 AP-DALIAAADSAMYEAKSRGKNQV 547


>gi|23100550|ref|NP_694017.1| hypothetical protein OB3095 [Oceanobacillus iheyensis HTE831]
 gi|22778783|dbj|BAC15051.1| hypothetical protein [Oceanobacillus iheyensis HTE831]
          Length = 420

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 8/179 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVG 151
           I  +R  Q++  D L+ L N +     +   NE    + IV  DID FK+IND F H VG
Sbjct: 234 IERDRFEQMAYTDFLTKLHNRTYMNKIMNELNESEQLVGIVVTDIDTFKRINDTFNHNVG 293

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DKVI   ++ +        ++ R GGEEF       + ++   L   L++ +  +     
Sbjct: 294 DKVIQHFANHIKSKLNEHDYLFRSGGEEFTIILTNRTYEQCQELVLLLKEEVAQTSAQAE 353

Query: 212 -SGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             G +IH+  +A       +   K  I     +AD+ L  AK +G+N+V   +    NT
Sbjct: 354 YRGDTIHVDYTATFGLNYYDCGEKSDIRKAYIQADELLIKAKNNGKNKVYIVNSTRTNT 412


>gi|313106087|ref|ZP_07792344.1| hypothetical protein PA39016_000170002 [Pseudomonas aeruginosa
           39016]
 gi|310878846|gb|EFQ37440.1| hypothetical protein PA39016_000170002 [Pseudomonas aeruginosa
           39016]
          Length = 436

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 18/168 (10%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N + F   L         + E+L+++F D D FK+IND  GH  GD V+  ++
Sbjct: 253 DSLTSLPNRAFFEGRLSRALRDASEHREQLAVLFIDSDRFKEINDRLGHAAGDTVLVNIA 312

Query: 160 DQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQ--INISSGPS 215
            ++         V RLGG+EFA   A L S      I  N    II + Q  I +S G +
Sbjct: 313 MRIRGQLRESDLVARLGGDEFAVLLAPLASGADALRIADN----IIASMQAPIRLSDGST 368

Query: 216 IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR--NRVVCFSD 260
           +  +++ GIA    H +  + +++ AD A+Y+AK+  R   R+   +D
Sbjct: 369 VSTSLTIGIALYPEHADTPAALLHDADMAMYIAKRQARGSRRLAELND 416


>gi|326318212|ref|YP_004235884.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375048|gb|ADX47317.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 872

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 18/174 (10%)

Query: 99  RISQLSRIDCLSGLLNHS---AFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGD 152
           R+  LS  D L+GL N      F+++L   +   E L+++  D+D FK IND  GH +GD
Sbjct: 431 RVRHLSLHDTLTGLPNRRRLHQFLATLLESDGPAEPLALLCLDLDRFKPINDALGHALGD 490

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE------QEAAILANDLRKIIENS 206
           +V+  ++ +L  + G      RLGG+EF     G+ +      + AA++A        + 
Sbjct: 491 RVLQEVARRLQALLGPQDIAARLGGDEFVLVLAGAQDPGDIGRRCAAVVAALCEPFAFDG 550

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           Q  +  G SI + + A +  R  +E    ++ + D ALY AK +GRN   C++D
Sbjct: 551 Q-TVCIGTSIGV-VQAPLHARTAQE----LLRKGDIALYDAKAAGRNTWRCYTD 598


>gi|218887576|ref|YP_002436897.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758530|gb|ACL09429.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 836

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 15/159 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ Q +  D L+GL NHS F       +      N +L ++FFD+D FK IND +GH  G
Sbjct: 675 KVKQQAMYDGLTGLFNHSQFHMILEREMERSRRTNRQLGLIFFDLDRFKAINDTYGHQAG 734

Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D V+  ++  +  V    M F  R GG+EFA      +E    I+    R+I E    + 
Sbjct: 735 DTVLRRVAAGISAVVRKGMDFPCRYGGDEFAVVV---TEVTPEIMEGLARRIREGVVTSC 791

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
                  + +S G+A     +    ++ RAD+A Y AKK
Sbjct: 792 KGA----VDLSMGLALLTPADTGENLVQRADRASYAAKK 826


>gi|218439029|ref|YP_002377358.1| diguanylate cyclase [Cyanothece sp. PCC 7424]
 gi|218171757|gb|ACK70490.1| diguanylate cyclase [Cyanothece sp. PCC 7424]
          Length = 620

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 91/177 (51%), Gaps = 15/177 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNE------KLSIVFFDIDYFKQIN 143
           KE  I+  ++++LS ID L+ L N  +F   L   +N        LS++  DIDYFK++N
Sbjct: 445 KERLIA--KLNRLSHIDNLTSLANRRSFDLYLKQEWNRHYRTQLPLSLILCDIDYFKKLN 502

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRK 201
           D +GH  GD+ +  ++  L      +     R GGEEF A  L  ++ E AI LA  ++ 
Sbjct: 503 DTYGHQAGDECLKRVAKVLKKHTKRSSDLAARYGGEEF-AIILPETDLEGAIFLAESIKD 561

Query: 202 IIENSQINISSG---PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I++ +I  S+    P + +T           + +  +I  ADQALY  K +GR++V
Sbjct: 562 NIKSLRIPNSASLVKPFVSMTFGVATMVPTQHQSLDILISLADQALYRGKNNGRDQV 618


>gi|73537482|ref|YP_297849.1| response regulator receiver modulated diguanylate cyclase
           [Ralstonia eutropha JMP134]
 gi|72120819|gb|AAZ63005.1| response regulator receiver modulated diguanylate cyclase
           [Ralstonia eutropha JMP134]
          Length = 359

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 87/180 (48%), Gaps = 17/180 (9%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+GL N   F   L +          +L+++  D+D FK  N
Sbjct: 177 QQLLETNLELQRLTNSDGLTGLSNRRYFDEYLNAEWKRAQREQSQLALLMIDVDAFKAYN 236

Query: 144 DNFGHPVGDKVI----AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           D +GH  GD+V+    A L D        P    R GGEEF+     +S   A + A  +
Sbjct: 237 DTYGHVAGDEVLRRVAAVLRDNCSRPADLP---ARFGGEEFSMVLPSTSPGGARLFAEKV 293

Query: 200 RKIIEN---SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R+ IE+   +     +G  + ++I A +      +P S ++  AD  LY AK++GRN+VV
Sbjct: 294 RRAIESLGIAHSGADTGGFLTVSIGAAVLVPEDGQPSSRLVEVADAGLYEAKRNGRNQVV 353


>gi|39995649|ref|NP_951600.1| GGDEF domain-containing protein [Geobacter sulfurreducens PCA]
 gi|39982412|gb|AAR33873.1| GGDEF domain protein [Geobacter sulfurreducens PCA]
 gi|298504671|gb|ADI83394.1| diguanylate cyclase [Geobacter sulfurreducens KN400]
          Length = 341

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 19/178 (10%)

Query: 93  LFISYNRISQL---SRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           LF  +N   QL   S  D L+G++  + F  ++GS           + I+  D+DYFK +
Sbjct: 167 LFRLWNEARQLAAQSHFDALTGVMTRAGFFKTVGSLAYAAQRSGSNVGIMLIDLDYFKLV 226

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
            DN+GH  GD+++  +++ +         VGR  G+EF              +A +LR+ 
Sbjct: 227 GDNYGHQTGDRILQLVAETITSHLRRSDVVGRYDGDEFVVYLSPVEPASLRTVAENLRRS 286

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVV 256
           IE     +     + +T S G+A+          I  ++  AD+ L  AK +G+N+VV
Sbjct: 287 IEEESARM-----VPVTASIGVAQGILGTDVDGGIEELVRLADECLMQAKYTGKNKVV 339


>gi|116669042|ref|YP_829975.1| diguanylate cyclase [Arthrobacter sp. FB24]
 gi|116609151|gb|ABK01875.1| diguanylate cyclase [Arthrobacter sp. FB24]
          Length = 383

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 74/160 (46%), Gaps = 15/160 (9%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN +AF+        +L       ++V  D+D+FK +ND +GH  GD  +   +
Sbjct: 223 DGLTGLLNRAAFLDLASEELLRLRHTRALGTLVLADLDHFKAVNDTYGHAAGDAALQSFA 282

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP--SIH 217
                   +   VGR GGEEF     G S   A  +  ++     N Q+    GP  S  
Sbjct: 283 SACNETVRSTDLVGRYGGEEFIFLLPGVSPDRAEAITAEI-----NKQLEAVRGPDGSRM 337

Query: 218 ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            T+S GIA        +  +I  AD ALY AK  GRNR V
Sbjct: 338 PTVSYGIAPIGKGTSGLDELIATADAALYRAKSLGRNRTV 377


>gi|332305358|ref|YP_004433209.1| diguanylate cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172687|gb|AEE21941.1| diguanylate cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 666

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 5/157 (3%)

Query: 107 DCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+ L N  AF  +L            + F D+DYFK IND  GH  GD+++  ++  L
Sbjct: 254 DPLTELQNRRAFERNLKQVIQDNQHNYFLCFIDLDYFKTINDTCGHAAGDEILVSVARIL 313

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                +   V RLGG+EFA   L    ++A  +AN++++ I     +   G + H++ S 
Sbjct: 314 KSNVRSNDIVARLGGDEFAILILDCPFEKALQIANNIKENIRTLTYHW-EGETFHLSASI 372

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           G+A +      + ++  AD A  +AK +GRN V  + 
Sbjct: 373 GVAPKVKHNSTTDLLNAADVACGLAKSAGRNTVRLYD 409


>gi|323493519|ref|ZP_08098641.1| sensory box/GGDEF family protein [Vibrio brasiliensis LMG 20546]
 gi|323312342|gb|EGA65484.1| sensory box/GGDEF family protein [Vibrio brasiliensis LMG 20546]
          Length = 303

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 70/142 (49%), Gaps = 9/142 (6%)

Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           H+A ++ L      L  +  DID+FKQ+ND+ GH  GD VI  L+D +          GR
Sbjct: 167 HAAKLNQL-----PLCCIIIDIDHFKQVNDDHGHDFGDNVIVELADIIRHNLRKTDCCGR 221

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
           +GGEEF      + + EA  +A  LR     S +N    P    ++S G+ +    +   
Sbjct: 222 IGGEEFLVVLNRTDQDEAYQIAERLRIQFLESSLNSQHKP---FSLSCGVTQLNPGDNEF 278

Query: 235 TIIY-RADQALYVAKKSGRNRV 255
             +Y RAD ALY AK  GRN+ 
Sbjct: 279 LDLYRRADNALYRAKHQGRNQT 300


>gi|254506857|ref|ZP_05118996.1| ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219550142|gb|EED27128.1| ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 634

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 88/168 (52%), Gaps = 11/168 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHP 149
           L +   R+S  +  D L+GL N S  + SL + + K     I F D+D FK +ND +GH 
Sbjct: 467 LGLELERLSFAANHDTLTGLANRSKALKSLQARHRKGQAQFIFFLDLDGFKAVNDQYGHG 526

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+++  ++ +L         V R+ G+EF   A+ SS Q   I     ++II+   + 
Sbjct: 527 VGDELLRIVAKRLTGCISAKDLVARIAGDEF-LIAIRSSGQCQPI----AQRIIDTLAVP 581

Query: 210 IS-SGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNR 254
           I  +  +  +T S GI+    ++ +     I +AD+ +YVAK+ G+NR
Sbjct: 582 IVINEKTCQVTASIGISYWAAEDEVILDEKIDQADRNMYVAKRLGKNR 629


>gi|203287865|ref|YP_002222880.1| response regulatory protein [Borrelia recurrentis A1]
 gi|201085085|gb|ACH94659.1| response regulatory protein [Borrelia recurrentis A1]
          Length = 310

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 16/167 (9%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
             LSRID L+ + N   F             + + + +   DIDYFK+ NDN+GH  GD+
Sbjct: 144 KNLSRIDGLTQIPNRRFFTDKFAKSWMQALEHQDNVIVGMLDIDYFKKYNDNYGHTNGDE 203

Query: 154 VIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQE----AAILANDLRKIIENSQI 208
            +  ++  L  +     + V R GGEEF   ++  S +E     + L  D+R +     +
Sbjct: 204 CLKLIAKSLNRIAIKYKIDVARYGGEEFILFSVNKSLEEMIKSVSFLIEDIRNL---GIV 260

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
           +  S  S  +T+S G+AE+  ++   + II  AD  LY AK SGRN+
Sbjct: 261 HEYSDISHFVTVSIGLAEQVPQDSNFTNIIKLADDKLYEAKISGRNQ 307


>gi|146310192|ref|YP_001175266.1| diguanylate cyclase [Enterobacter sp. 638]
 gi|145317068|gb|ABP59215.1| diguanylate cyclase [Enterobacter sp. 638]
          Length = 354

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 7/177 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNE-KLSIVFFDIDYFKQ 141
           +  +L  L      ++ LS +D L+GL N       + +L +  + +  ++  DID+FK 
Sbjct: 171 AKQLLYRLLEERETLNDLSMMDPLTGLYNRRGLNNRLENLPTLEQGEHFVLLLDIDHFKA 230

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            ND++GH +GD+ +  +S  +     +   V R GGEEF       + ++A   A  +R+
Sbjct: 231 YNDHYGHMMGDQALIRVSAAIRDAVRSRDIVARFGGEEFMVLLTSVTLEQARQTAERIRQ 290

Query: 202 IIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            + + +I      S+  ++TIS GIA     E I   + +AD+ALY AK  GRN ++
Sbjct: 291 KVYDLKIPHMFNESVATNVTISIGIAI-FEGEDIEGALGKADKALYEAKHRGRNNIL 346


>gi|238789541|ref|ZP_04633325.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia frederiksenii ATCC 33641]
 gi|238722294|gb|EEQ13950.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia frederiksenii ATCC 33641]
          Length = 664

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + +   +  R+  L+  D ++GL N  A    + S      +  + I++ D+D FK
Sbjct: 218 SGTDITKERRAQERLRILANTDMITGLPNRHAIHERINSAIQTRGDTSVGIIYLDLDNFK 277

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILA 196
           ++ND++GH  GD+++  +S  ++   G    + RLGG+EF      A + S E     + 
Sbjct: 278 KVNDHYGHMFGDRLLKDVSLAILSCLGENEMLARLGGDEFIVLVENAIMNSLETTTQRIL 337

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           N ++       I + +G SI I +        H + +  II  AD A+Y AK+ G+    
Sbjct: 338 NRMKLPFRVGLIEVYTGCSIGIALCPE-----HGDTLENIIRSADTAMYTAKEHGKQTYS 392

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 393 IFSQQMNK 400


>gi|308185836|ref|YP_003929967.1| hypothetical protein Pvag_0305 [Pantoea vagans C9-1]
 gi|308056346|gb|ADO08518.1| Uncharacterized protein y4lL [Pantoea vagans C9-1]
          Length = 867

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 15/172 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           RI  LSR D L+GL N    +       +L      L+++  D+D F+ IN+ +GH  GD
Sbjct: 435 RIQFLSRHDVLTGLSNRVQLLEFLTLHLALPDGAAPLTLITLDLDQFRPINETWGHAAGD 494

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V++ ++ +L    G+   V RL G+EF      ++ +    +     +++   Q  +S+
Sbjct: 495 EVLSQIAQRLKHCIGSQELVARLSGDEFVLVLRETNRER---IDQRCAQLVHEVQQPVST 551

Query: 213 GPSIH-ITISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRNRVVCFSD 260
           G  +H +TIS GIA  C  +  S    ++  AD AL  A+ +GRN+ V +++
Sbjct: 552 GQHVHYLTISMGIA--CAPQDASHPEALLQMADIALNEARDAGRNQWVWYAN 601


>gi|299532935|ref|ZP_07046322.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           S44]
 gi|298719159|gb|EFI60129.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           S44]
          Length = 900

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 15/167 (8%)

Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N S F   LG       S N +++++ F+ID FK +ND++GH +GD+V+
Sbjct: 460 LAHRDTLTGLPNRSQFTRMLGEAVELSQSTNRRMAVLLFNIDRFKDVNDSYGHSIGDEVL 519

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +S Q+         +GRL G+E    A     +++A+   +              G S
Sbjct: 520 RHVSVQMQGALRHGDIIGRLAGDEICVVAQSICGRDSAVDVAERLMAAAGQPWTTPDGLS 579

Query: 216 IHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + +++SAGI   C    H      ++  A  A+Y AK  G N   CF
Sbjct: 580 VVVSVSAGI---CLYPDHALTADDLLQGAHAAVYGAKARGSN-AWCF 622


>gi|264680504|ref|YP_003280414.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           CNB-2]
 gi|262211020|gb|ACY35118.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           CNB-2]
          Length = 900

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 15/167 (8%)

Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N S F   LG       S N +++++ F+ID FK +ND++GH +GD+V+
Sbjct: 460 LAHRDTLTGLPNRSQFTRMLGEAVELSQSTNRRMAVLLFNIDRFKDVNDSYGHSIGDEVL 519

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +S Q+         +GRL G+E    A     +++A+   +              G S
Sbjct: 520 RHVSVQMQGALRHGDIIGRLAGDEICVVAQSICGRDSAVDVAERLMAAAGQPWTTPDGLS 579

Query: 216 IHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + +++SAGI   C    H      ++  A  A+Y AK  G N   CF
Sbjct: 580 VVVSVSAGI---CLYPDHALTADDLLQGAHAAVYGAKARGSN-AWCF 622


>gi|241203649|ref|YP_002974745.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240857539|gb|ACS55206.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 781

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 94/189 (49%), Gaps = 13/189 (6%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNE 127
            +T+  L  +I+G  ++   +  +RI  ++  D L+GL N +     L S        N 
Sbjct: 326 EMTLVALATHIAGIAIERKRVD-DRIHFMAHHDDLTGLPNRAFLKERLASILDQARRNNR 384

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           K+++ + D+D FK IND  GH  GD+V+  ++ ++         V RLGG+EF    +  
Sbjct: 385 KVTVAYIDLDNFKDINDGRGHAAGDEVLKEIATRMANSVRASDMVVRLGGDEFLVVLVHQ 444

Query: 188 SEQEAAILA--NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQAL 244
           S  +A I     +L+K I N  I  + G  I IT S G+A        S  ++  AD+A+
Sbjct: 445 SSHDAGITRRLRELQKAI-NRPIRGADG-EITITSSIGVAAFPFDGATSEELLANADRAM 502

Query: 245 YVAKKSGRN 253
           Y AK+ GRN
Sbjct: 503 YRAKELGRN 511


>gi|238752235|ref|ZP_04613715.1| Diguanylate cyclase [Yersinia rohdei ATCC 43380]
 gi|238709503|gb|EEQ01741.1| Diguanylate cyclase [Yersinia rohdei ATCC 43380]
          Length = 394

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 11/168 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQIND 144
           + L +  + ++  +  D L+GL N + F   L          E  +++F D D FK IND
Sbjct: 207 RNLTLENDSLAHRAAHDSLTGLANRAFFEGRLIRTLKECKSKEHAAVLFLDGDRFKDIND 266

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKI 202
           N+GH  GD V+  ++D++  +      V RLGG+EFA   A + +++    I  N +  +
Sbjct: 267 NYGHATGDIVLTTIADRIRALLRESDLVARLGGDEFAILLAPIYNTDDVLTIADNIIDSM 326

Query: 203 IENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKK 249
            +   I + +G  I  ++S GIA    H +    ++ RAD+A+Y AKK
Sbjct: 327 AQ--PIILPNGSEIITSLSIGIAIYPDHAQTPDELLRRADEAMYQAKK 372


>gi|167757219|ref|ZP_02429346.1| hypothetical protein CLORAM_02769 [Clostridium ramosum DSM 1402]
 gi|167703394|gb|EDS17973.1| hypothetical protein CLORAM_02769 [Clostridium ramosum DSM 1402]
          Length = 389

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 94/204 (46%), Gaps = 25/204 (12%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRI--------------DCLSGLLNHSAFISSLG 123
           ++L +GY     +++ F++ + I + +R+              D L+GL N     + L 
Sbjct: 184 MALFVGYYHYQSMRQTFLNQSIILEKNRMIEEKSAELDFIAHHDSLTGLQNRRYLANCLN 243

Query: 124 S-YNE------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
           + Y E      K  +   DID FK  ND FGH  GD+ +  +S+ L +      F+ R G
Sbjct: 244 NIYLESRDSQLKTGVFIIDIDDFKSYNDTFGHIKGDECLKRVSNALNLCLSEG-FLIRYG 302

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSIHITISAGIAERCHKEPI 233
           GEEF      +  +E   +  +L   +E   +   N SS   + ++I   I     +E  
Sbjct: 303 GEEFVYLLKNTDLEEMQRIGTELCHTVERLHLLMPNTSSREYLTVSIGGAIGVLNGEESW 362

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
             ++ +ADQALY AK + +N+ +C
Sbjct: 363 QAVLEQADQALYKAKNTNKNKCIC 386


>gi|148977640|ref|ZP_01814216.1| putative GGDEF family protein [Vibrionales bacterium SWAT-3]
 gi|145963155|gb|EDK28423.1| putative GGDEF family protein [Vibrionales bacterium SWAT-3]
          Length = 488

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 104/223 (46%), Gaps = 24/223 (10%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISL----LLGYISGSILKELFISYNRI 100
           +A+    Y  L     +E+  V     +I++I + L    +  Y++ +I +  F      
Sbjct: 276 VASHHAMYYELDLVKEIEHFFVYEKDSLIVAIIVYLFSVTIFFYVNSNIERGYF------ 329

Query: 101 SQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            +L+  D ++GLLN     AF   +  +++  ++  FDID FK IND +GH  GD VI +
Sbjct: 330 KELAAKDPMTGLLNRRGLEAFWRRV-EHDQLFALTVFDIDDFKSINDTYGHDKGDDVIRY 388

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK--IIENSQINISSGPS 215
           +S Q+     +     R GGEEF    L   ++E  +   D  K  I  NS   I +G  
Sbjct: 389 MSRQITSSIRSSDVAARFGGEEF-VVYLKGEDRETLMRTLDRVKTAICVNSTDIIPNG-- 445

Query: 216 IHITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              T+S G   +     K     I   AD+ LYVAK +G++R+
Sbjct: 446 --FTVSGGVCIVETEQSKLNFEEIFKFADEKLYVAKTTGKDRI 486


>gi|145592794|ref|YP_001157091.1| diguanylate cyclase [Salinispora tropica CNB-440]
 gi|145302131|gb|ABP52713.1| diguanylate cyclase [Salinispora tropica CNB-440]
          Length = 475

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-KLSIVFFDIDYF 139
           LL   +GS L  L  +  R+ + +  D L+GL +   F   + +    + +++  D+D F
Sbjct: 306 LLAGQAGSALDRLE-TVARLRERASSDPLTGLRHTGPFGERIAAAAPGRTALLAIDVDGF 364

Query: 140 KQINDNFGHPVGDKVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           K +ND +GH  GD+++  L+  L   +  G  ++  R GG+EF A    +   EA  +A 
Sbjct: 365 KTVNDTYGHQAGDRLLVRLARALEGALRQGDELY--RTGGDEFVAVIEVNRPDEAVRVAE 422

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            L           ++   I  TIS G+A     EP    ++RADQALY  K+ GR+ V
Sbjct: 423 RL----------TAAARRIGRTISVGVALPHPDEPADHALHRADQALYRVKREGRDGV 470


>gi|78223917|ref|YP_385664.1| diguanylate cyclase with GAF sensor [Geobacter metallireducens
           GS-15]
 gi|78195172|gb|ABB32939.1| diguanylate cyclase with GAF sensor [Geobacter metallireducens
           GS-15]
          Length = 686

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 86/182 (47%), Gaps = 12/182 (6%)

Query: 87  GSILKELFISYNR---ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDI 136
            SI+ E  +S  R   + QLS  D L+GL N       +          N  L+++  D+
Sbjct: 483 ASIMIERALSIERADFLEQLSITDPLTGLYNRRFLKRRMEEELARSIRQNLSLTVMLIDL 542

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK  ND  GH  GD+ +  ++  L         V R GGEEF     G+S++E+  +A
Sbjct: 543 DNFKIYNDLCGHLAGDRALKKMARILSDTARQMDVVTRYGGEEFCIILPGTSKKESLFVA 602

Query: 197 NDLRKIIENSQINISSG-PSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNR 254
             +R+ IE  + +     P   +T S G++       +  ++ + AD ALY AK  GRNR
Sbjct: 603 ERIRREIEGEEFSHEENLPQGRLTASIGVSSFPEDGNVEAVLVKAADVALYRAKSEGRNR 662

Query: 255 VV 256
           VV
Sbjct: 663 VV 664


>gi|119775510|ref|YP_928250.1| GGDEF family protein [Shewanella amazonensis SB2B]
 gi|119768010|gb|ABM00581.1| diguanylate cyclase [Shewanella amazonensis SB2B]
          Length = 581

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 12/166 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVG 151
           ++  +S ID L+G+ N   F     ++L  + ++   L ++ FD+DYFKQ ND +GH  G
Sbjct: 397 QVKAISEIDGLTGIHNRRYFDLKLDAALARHQKEHIHLGLIMFDLDYFKQFNDTYGHLAG 456

Query: 152 DKVIAFLSDQLVVVF--GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           D+ +  + +++  +   G   F  R GGEEF     G   +    +A D+R+ I    I 
Sbjct: 457 DQCLKDVVNRIKQLLPNGNETF-ARYGGEEFVLLVQGYDWRALRQIAEDIRESIVTLAIP 515

Query: 210 ISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRN 253
               P    T+S GIA   +  +     +I   D ALY AK+ G+N
Sbjct: 516 HRQTPQGIATLSLGIAHLPQDQRATAQELIATGDTALYRAKRRGKN 561


>gi|116049051|ref|YP_792147.1| hypothetical protein PA14_49890 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115584272|gb|ABJ10287.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 435

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 18/168 (10%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N + F   L         + E+L+++F D D FK+IND  GH  GD V+  ++
Sbjct: 252 DSLTSLPNRAFFEGRLSRALRDASEHREQLAVLFIDSDRFKEINDRLGHAAGDTVLVNIA 311

Query: 160 DQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQ--INISSGPS 215
            ++         V RLGG+EFA   A L S      I  N    II + Q  I +S G +
Sbjct: 312 MRIRGQLRESDLVARLGGDEFAVLLAPLASGADALRIADN----IIASMQAPIRLSDGST 367

Query: 216 IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR--NRVVCFSD 260
           +  +++ GIA    H +  + +++ AD A+Y+AK+  R   R+   +D
Sbjct: 368 VSTSLTIGIALYPEHADTPAALLHDADMAMYIAKRQARGSRRLAELND 415


>gi|297568393|ref|YP_003689737.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924308|gb|ADH85118.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2]
          Length = 451

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 79/171 (46%), Gaps = 13/171 (7%)

Query: 106 IDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+GL N  +   +L         Y  KLS++F+D+D FK+IND  GH VGD+V+   
Sbjct: 131 IDFLTGLNNRHSLELALEQEFQRAARYGRKLSVLFWDLDSFKEINDQLGHDVGDQVLQHF 190

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
              L     T  F  R GG+EF         + A  +A  +R  +    + I     + I
Sbjct: 191 GRVLATGKRTVDFAARYGGDEFVMLLPDVDPEGAMTMAERIRDQVCRQPVFIDK-HRVEI 249

Query: 219 TISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           T+S GIA   + E  S    ++  AD A+  AK  G+N V+ +   E    
Sbjct: 250 TLSGGIA--TYPEDASYARDLLVCADYAMLQAKGRGKNSVMRYGVTEKRAA 298


>gi|225619790|ref|YP_002721047.1| putative GGDEF domain-containing protein [Brachyspira
           hyodysenteriae WA1]
 gi|225214609|gb|ACN83343.1| putative GGDEF domain protein [Brachyspira hyodysenteriae WA1]
          Length = 275

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 7/167 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++S L+  D L+GL N    I  L    + NE  SIV  D+D FK  ND +GH +GD V+
Sbjct: 109 KLSFLANRDKLTGLYNRGYIIKYLQEKETTNEIYSIVIVDLDKFKHYNDTYGHNIGDHVL 168

Query: 156 AFLSDQLVVVFGTPMF---VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +S  +        +   + R GGEEF      +++ +      ++R  I  + ++ + 
Sbjct: 169 KLISKVMKDSLKNIKYKSVLARYGGEEFIIVIDVNNKNDLFNAMEEIRNSIIETDLS-TE 227

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             S+  T S G A +     + T I +ADQ+LY AK++GRN+ V   
Sbjct: 228 EYSLKATASLGGAIKEENTTLRTFINKADQSLYNAKETGRNKSVILD 274


>gi|254517032|ref|ZP_05129090.1| diguanylate cyclase [gamma proteobacterium NOR5-3]
 gi|219674537|gb|EED30905.1| diguanylate cyclase [gamma proteobacterium NOR5-3]
          Length = 507

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 8/150 (5%)

Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N + +        +        LSIVF D + FK+IND FGH  GD V+  ++
Sbjct: 349 DALTGVYNRAGYDERTHELYARWQRSGASLSIVFVDCNKFKEINDTFGHTAGDLVLVKVA 408

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           D L +       V R GG+EF      +  Q A + A      ++N+  N  +G  + ++
Sbjct: 409 DVLQLRARASDIVCRYGGDEFVILLPDTHVQGAEVFARSACDEVQNAGFN-DNGKPLDVS 467

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKK 249
           IS G+ E    + + + I RAD+A+Y AKK
Sbjct: 468 ISCGVTELIKGDTLESAIGRADEAMYQAKK 497


>gi|206601829|gb|EDZ38312.1| Diguanylate cyclase/phosphodiesterase [Leptospirillum sp. Group II
           '5-way CG']
          Length = 720

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 95/214 (44%), Gaps = 11/214 (5%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           YG+   L      VI SI   +++  + GSI K +  + + +   S  D L+GL N   F
Sbjct: 254 YGVTRELTPQEQSVIQSILSVMVM--VIGSI-KVISRTLSELEYYSTHDPLTGLHNRRYF 310

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              +G        +  K  ++  D+D FK +ND++GH  GD+V+  L   +         
Sbjct: 311 NEMIGYEIQRSERHGHKFCLLMIDLDNFKDVNDSYGHLDGDRVLNQLGKIVTGTVRKGDI 370

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHK 230
           V R GG+EF      +S      LA  +R+ I+      +   S H+T+S GI A     
Sbjct: 371 VCRFGGDEFVVLLSETSLSGGCTLAETVREAIQTWSFGTTDRGSFHVTVSVGIVAYPQDG 430

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             I  ++   D  LY AK+ GRN V    D+  +
Sbjct: 431 NQIEDLLAGLDLVLYRAKERGRNTVASSRDLRTD 464


>gi|156741489|ref|YP_001431618.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232817|gb|ABU57600.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Roseiflexus castenholzii DSM 13941]
          Length = 794

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 93/182 (51%), Gaps = 24/182 (13%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS--------IVFFDIDYFKQINDNF 146
           ++ +R++ LS  D L+GL N +  +  L    E+ +        I+  D+D FKQIND+ 
Sbjct: 350 LTEDRLAYLSSHDPLTGLANRTLLLDRLQLALERRNRHGAALCGILLLDLDRFKQINDSL 409

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSEQEAAILANDLRKIIE 204
           GH VGD+V+  ++ +L  +      V RLGG+EFA    ++GS         +D+ +I  
Sbjct: 410 GHMVGDEVLIAVAGRLKHITRPGDTVARLGGDEFAVVLDSVGS--------LDDIWRIAL 461

Query: 205 NSQINIS-----SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             Q  +S        S+ + +S GIA +       + ++  AD AL+ AK  GR+R+V F
Sbjct: 462 RIQQALSHPITVQDQSLMVGVSLGIAIDDGRTTSAAALLRDADTALHQAKARGRSRIVLF 521

Query: 259 SD 260
            +
Sbjct: 522 EE 523


>gi|91226144|ref|ZP_01261034.1| hypothetical protein V12G01_08525 [Vibrio alginolyticus 12G01]
 gi|91189378|gb|EAS75656.1| hypothetical protein V12G01_08525 [Vibrio alginolyticus 12G01]
          Length = 652

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 16/171 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D L+GL N S F       +   G   ++ ++++ D+D FK++ND +GH  G
Sbjct: 479 RLEHLAHHDALTGLANRSKFHLELEQLVQRSGYLRDEFAVLYLDLDGFKEVNDTYGHDAG 538

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK----IIENSQ 207
           D+V+  +S++L         + RL G+EF      ++++    +A  L +     IE   
Sbjct: 539 DEVLKKVSERLTSATRHSDLIARLSGDEFVMLVNPANQKVVTRIAEQLLESICAPIEYKG 598

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +  G SI + +  G+ ER      + ++  AD A+Y AKK+G+ + +  
Sbjct: 599 HLLKVGVSIGVKL-VGVNER----DATRVLKSADTAMYQAKKAGKGQAILM 644


>gi|219669486|ref|YP_002459921.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2]
 gi|219539746|gb|ACL21485.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2]
          Length = 284

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 88/173 (50%), Gaps = 14/173 (8%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           +S ++I +++  D L+ L N           I S       LSI+F DIDYFK+IND  G
Sbjct: 113 LSIHQIKEMAITDSLTKLYNRRYIDERLPIDIQSSFELARPLSILFIDIDYFKKINDQNG 172

Query: 148 HPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  GD+V+  L+  L         +V R GG+E      GS ++ A  +AN LR+ IE+ 
Sbjct: 173 HAAGDQVLQKLALLLQKQLRRGSGWVARYGGDELLICLPGSGKKVARSIANRLREAIEHY 232

Query: 207 QINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRV 255
                 G +I+IT S G+ +   K+     I+ +I  AD  LY AK  GRNRV
Sbjct: 233 PFYF-KGKAINITCSIGV-QTIFKDSGVVNIAELIAMADNNLYQAKNEGRNRV 283


>gi|269966795|ref|ZP_06180869.1| hypothetical protein VMC_22990 [Vibrio alginolyticus 40B]
 gi|269828613|gb|EEZ82873.1| hypothetical protein VMC_22990 [Vibrio alginolyticus 40B]
          Length = 325

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 16/172 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  L+  D L+GL N S F       +   G   ++ ++++ D+D FK++ND +GH  
Sbjct: 151 ERLEHLAHHDALTGLANRSKFHLELEQLVQRSGYLRDEFAVLYLDLDGFKEVNDTYGHDA 210

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK----IIENS 206
           GD+V+  +S++L         + RL G+EF      ++++    +A  L +     IE  
Sbjct: 211 GDEVLKKVSERLTSATRHSDLIARLSGDEFVMLVNPANQKVVTRIAEQLLESICAPIEYK 270

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +  G SI + +  G+ ER      + ++  AD A+Y AKK+G+ + +  
Sbjct: 271 GHLLKVGVSIGVKL-VGVNER----DATRVLKSADTAMYQAKKAGKGQAILM 317


>gi|259415572|ref|ZP_05739493.1| diguanylate cyclase/phosphodiesterase [Silicibacter sp. TrichCH4B]
 gi|259348802|gb|EEW60564.1| diguanylate cyclase/phosphodiesterase [Silicibacter sp. TrichCH4B]
          Length = 700

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 86/182 (47%), Gaps = 15/182 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L++L  +  RI  L+  D L+ L N  A    L        S   +++++  D+D FKQI
Sbjct: 250 LRDLSAAKTRIEHLALHDQLTNLPNRRALQEYLEHCFDLAPSSEHRVAVLHVDLDRFKQI 309

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRK 201
           ND  GH  GD+++   +  +    G      R+GG+EF        ++ +   +AN   +
Sbjct: 310 NDLMGHAAGDEILRHAARAMQQQIGADDLTARVGGDEFVIVLRQAGTDAQVECIAN---R 366

Query: 202 IIENSQINIS-SGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IIE     I   G  +H+  S GIA       +P + I+  AD ALYVAK  GR R   +
Sbjct: 367 IIEAVSQPIEIWGDFVHVGASVGIAFLMAGETDP-ARILSNADIALYVAKSKGRGRASFY 425

Query: 259 SD 260
           +D
Sbjct: 426 ND 427


>gi|325982844|ref|YP_004295246.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas sp. AL212]
 gi|325532363|gb|ADZ27084.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas sp. AL212]
          Length = 576

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 95/178 (53%), Gaps = 13/178 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYN-EKLSIVFFDIDYFKQIND 144
           E   +  RI +++  D L+GL N +     +      G+ N ++++++F D+D FK IND
Sbjct: 139 ERHRAEQRILEMATYDILTGLPNRALLKDRIERALEHGNRNRQRVALLFIDLDNFKVIND 198

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKII 203
           + GH VGDK++  ++ + V +      V R GG+EF       S  E+A  A  + +KI+
Sbjct: 199 SLGHDVGDKLLQAVAARFVSIVRGEDTVARQGGDEFIVLL---SNLESAFDAEAVAQKIL 255

Query: 204 ENSQIN-ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              Q++ +  G  +HI+ S GI+      E I T++  +D A+Y AKK+GRN    F 
Sbjct: 256 NALQLHFLIDGKELHISGSIGISLFPDDGEDIWTLLRNSDIAMYHAKKNGRNNCEFFK 313


>gi|224824691|ref|ZP_03697798.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
 gi|224603184|gb|EEG09360.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
          Length = 1086

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 11/170 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D L+ L N S  I+ L        S  ++++++F D+D FK IND+FGH  G
Sbjct: 642 RLQFLANHDPLTRLPNRSWLIACLEDRIQQIASSGQQVAVMFLDLDRFKLINDSFGHQTG 701

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKIIENSQINI 210
           D+++   + +L  V G    + RLGG+EF    +  +S+   + LA D+  ++  +Q   
Sbjct: 702 DELLRETASRLEQVVGGRGQIARLGGDEFTLLVSHFASQATLSTLAEDILAVL--AQPLW 759

Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             G  + +T S GI+   H      T++  AD A+Y AK++G+N    F+
Sbjct: 760 LEGQELIVTGSLGISVYPHDGSDARTLLKNADVAMYRAKEAGKNTYQFFA 809


>gi|167755788|ref|ZP_02427915.1| hypothetical protein CLORAM_01303 [Clostridium ramosum DSM 1402]
 gi|237734755|ref|ZP_04565236.1| diguanylate cyclase [Mollicutes bacterium D7]
 gi|167704727|gb|EDS19306.1| hypothetical protein CLORAM_01303 [Clostridium ramosum DSM 1402]
 gi|229382083|gb|EEO32174.1| diguanylate cyclase [Coprobacillus sp. D7]
          Length = 347

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 2/158 (1%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           + +++  D L+GL        SL S  N   +IV  DID +K IND +GH  GD V+  L
Sbjct: 186 LQEIADNDQLTGLRTRHYLFDSLNSSPNLDCNIVIGDIDDYKIINDTYGHLCGDYVLHSL 245

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           ++ +       + + R GGEEF      ++++E   +      ++      I  G  I I
Sbjct: 246 ANLMKDKIPDDIDICRWGGEEFVFLCFNTNKEELTYVIERFNNLLRQHSF-IYEGNVIKI 304

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T++ GI++    + ++T+I  AD  LY  K+ G+++++
Sbjct: 305 TMTFGISDTMKAKHLNTMIKCADDRLYKGKRCGKDQII 342


>gi|119900138|ref|YP_935351.1| GGDEF/EAL/PAS/PAC-domain-containing protein [Azoarcus sp. BH72]
 gi|119672551|emb|CAL96465.1| GGDEF/EAL/PAS/PAC-domain containing protein [Azoarcus sp. BH72]
          Length = 689

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 91/190 (47%), Gaps = 23/190 (12%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQI 142
           L E+  + +RI QL+  D L+GL N S         +   G      +++F D+D FK +
Sbjct: 243 LSEIKAAEDRIRQLAYFDPLTGLPNRSLLEDRAGQVLVRAGRDRRAATLMFIDLDRFKTV 302

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+ GH +GD+++     +L         V RLGG+EF   A  +  + A  LA  + ++
Sbjct: 303 NDSLGHLMGDQLLRLAGQRLRDSVRLSDTVARLGGDEFIVLAPDTGAEGAVRLAEKILEV 362

Query: 203 ------IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
                 +++ ++ IS  PSI      GIA      +    ++  AD A+Y AK+ GRN  
Sbjct: 363 FAAPFDLDDRELTIS--PSI------GIARYPDDGKDFPALLQSADIAMYQAKREGRNGF 414

Query: 256 VCFSDIENNT 265
             FS IE N 
Sbjct: 415 RMFS-IEMNA 423


>gi|89895074|ref|YP_518561.1| hypothetical protein DSY2328 [Desulfitobacterium hafniense Y51]
 gi|89334522|dbj|BAE84117.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 284

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 88/173 (50%), Gaps = 14/173 (8%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           +S ++I +++  D L+ L N           I S       LSI+F DIDYFK+IND  G
Sbjct: 113 LSIHQIKEMAITDSLTKLYNRRYIDERLPIDIQSSFELARPLSILFIDIDYFKKINDQNG 172

Query: 148 HPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  GD+V+  L+  L         +V R GG+E      GS ++ A  +AN LR+ IE+ 
Sbjct: 173 HAAGDQVLQKLALLLQKQLRRGSGWVARYGGDELLICLPGSGKKVARSIANRLREAIEHY 232

Query: 207 QINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRV 255
                 G +I+IT S G+ +   K+     I+ +I  AD  LY AK  GRNRV
Sbjct: 233 PFYF-KGKAINITCSIGV-QTIFKDSGVVNIAELIAMADNNLYQAKNEGRNRV 283


>gi|312882345|ref|ZP_07742088.1| hypothetical protein VIBC2010_00090 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369991|gb|EFP97500.1| hypothetical protein VIBC2010_00090 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 827

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 9/134 (6%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           I++ D D FK IND+ GH  GD ++  +S+ L  + G   FV R+GG+EF       S +
Sbjct: 424 ILYLDTDEFKTINDSLGHAAGDNLLITISEVLKEIIGKSGFVARMGGDEFLVLVTDISLK 483

Query: 191 EAAILANDLRKIIENS---QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYV 246
           E  +LA  + K +        N+     I +++S G+ +   H     T++  AD A+Y 
Sbjct: 484 EGEVLAAQINKALRRPYYIDDNL-----IFVSVSIGVCQFPEHGRDPETLVRNADTAMYH 538

Query: 247 AKKSGRNRVVCFSD 260
           AK+ GR++   ++D
Sbjct: 539 AKRHGRDQYRVYAD 552


>gi|296390512|ref|ZP_06879987.1| hypothetical protein PaerPAb_20261 [Pseudomonas aeruginosa PAb1]
          Length = 434

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 18/168 (10%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N + F   L         + E+L+++F D D FK+IND  GH  GD V+  ++
Sbjct: 251 DSLTSLPNRAFFEGRLSRALRDASEHREQLAVLFIDSDRFKEINDRLGHAAGDTVLVNIA 310

Query: 160 DQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQ--INISSGPS 215
            ++         V RLGG+EFA   A L S      I  N    II + Q  I +S G +
Sbjct: 311 MRIRGQLRESDLVARLGGDEFAVLLAPLASGADALRIADN----IIASMQAPIRLSDGST 366

Query: 216 IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR--NRVVCFSD 260
           +  +++ GIA    H +  + +++ AD A+Y+AK+  R   R+   +D
Sbjct: 367 VSTSLTIGIALYPEHADTPAALLHDADMAMYIAKRQARGSRRLAELND 414


>gi|294676177|ref|YP_003576792.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Rhodobacter capsulatus SB
           1003]
 gi|294474997|gb|ADE84385.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Rhodobacter capsulatus SB
           1003]
          Length = 610

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 78/177 (44%), Gaps = 10/177 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           + EL  S  R   ++  D L+G  N  AF    I  L +    L + F D+D+FK +ND 
Sbjct: 172 VAELAASEARAQHMASHDFLTGAANRMAFQNRLIERLEAGTNDLFVAFLDLDHFKHVNDT 231

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GD+VI       V        V RLGG+EF     G   + A      L   +E 
Sbjct: 232 FGHDAGDEVIRMACAAFVSRAPAGTMVARLGGDEFGVLLTGMDRETAVATCQGL---LET 288

Query: 206 SQINISS-GPSIHITISAGIAE-RCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259
              + S  G S+ I  S G+ +  CH    +  + R AD AL+ AK+ G   V  F 
Sbjct: 289 CSGDFSVFGNSVFIGASCGLVDGSCHPGCDAADLMRFADLALFAAKQDGGQTVRVFD 345


>gi|238783426|ref|ZP_04627449.1| hypothetical protein yberc0001_19770 [Yersinia bercovieri ATCC
           43970]
 gi|238715671|gb|EEQ07660.1| hypothetical protein yberc0001_19770 [Yersinia bercovieri ATCC
           43970]
          Length = 572

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 84/176 (47%), Gaps = 13/176 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           +L  +  R+   +R D L+ L N   F   L          +  L+I+  DIDYFK  ND
Sbjct: 389 KLIKANRRLEIQARTDSLTKLPNRREFKKVLAHEFMRARRSDSPLAILMIDIDYFKNFND 448

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  L          V R GGEEFAA    + ++ A+++A  + + I
Sbjct: 449 YYGHISGDACLRLVARTLRKSLKRNTDIVARYGGEEFAAILPDTDQEGASLVAEHILQSI 508

Query: 204 ENSQINISSGPSIHITISAGIA-ERCHKEP----ISTIIYRADQALYVAKKSGRNR 254
               I  S      +TIS G+   + H+       + ++  ADQALY +KK+GRN+
Sbjct: 509 RAMGIKHSDSKFRKVTISLGVTVYQAHQHAGITDQADLMLTADQALYYSKKNGRNQ 564


>gi|229176024|ref|ZP_04303519.1| Sensory box protein [Bacillus cereus MM3]
 gi|228607456|gb|EEK64783.1| Sensory box protein [Bacillus cereus MM3]
          Length = 677

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 23/182 (12%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQIND 144
           L+    ++  L+  D L+GL N   F   L         S N+ ++++F D+D FK+IND
Sbjct: 238 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQTSVND-IAVMFLDLDRFKKIND 296

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKI- 202
             GH VGD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  + 
Sbjct: 297 RLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPDMYSEKSAAFIAEQILTVL 356

Query: 203 -----IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                I++ +++I+  PSI I +        +   ++ ++  AD A+Y AK +G+NR + 
Sbjct: 357 NKPFFIKDEELSIT--PSIGIAMYPD-----YGTDVTELMKNADMAMYRAKANGKNRFIF 409

Query: 258 FS 259
           FS
Sbjct: 410 FS 411


>gi|255650886|ref|ZP_05397788.1| putative signaling protein [Clostridium difficile QCD-37x79]
          Length = 152

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 10/131 (7%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+DYFK+ ND +GH  GD  +  ++  +       MF+ R GGEEF   ++    +++ I
Sbjct: 29  DVDYFKEYNDTYGHYNGDIALKNITIIIKKYLKKDMFMIRYGGEEFLILSVCKDYKKSKI 88

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGR 252
               L +I++    N       ++T+S GI + C    I    II  AD+ALY AK+SGR
Sbjct: 89  FGRKLCRIVKKFLNN-------NLTVSIGI-DTCKNSSIDIREIIENADKALYKAKESGR 140

Query: 253 NRVVCFSDIEN 263
           NR + + D +N
Sbjct: 141 NRCLHYHDFKN 151


>gi|171317409|ref|ZP_02906602.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Burkholderia ambifaria MEX-5]
 gi|171097426|gb|EDT42267.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Burkholderia ambifaria MEX-5]
          Length = 860

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 15/166 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI  L+  D L+GL N +         +S      ++++++  D+D FK IND+FGH VG
Sbjct: 261 RIEYLANHDALTGLPNRNLLGDRMEQAMSQARRTGQRVAVMVLDLDRFKHINDSFGHSVG 320

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQIN 209
           D ++  ++ +L         V RLGG+EF      L +     AI    L   +E   ++
Sbjct: 321 DGLLRVVAARLKRSVRDGDTVARLGGDEFVVMLVNLATQSDADAIARKILDTFVEPFTLD 380

Query: 210 ISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRN 253
              G  +H+T S G++  C  +     T++  AD ALY AK+ GRN
Sbjct: 381 ---GHDLHVTTSVGVS-LCPTDGADAETLLKTADAALYSAKEHGRN 422


>gi|149907966|ref|ZP_01896634.1| PAS sensor diguanylate cyclase and phophodiesterase [Moritella sp.
           PE36]
 gi|149808972|gb|EDM68903.1| PAS sensor diguanylate cyclase and phophodiesterase [Moritella sp.
           PE36]
          Length = 911

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 87/184 (47%), Gaps = 10/184 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIV--FFDID 137
           I   I K   IS  +I+  ++ D L+GL+N   F   L          +L+ V  F D+D
Sbjct: 465 IQVDITKSRIIS-KQIAYQAKHDMLTGLINRYEFEHQLSDAVCSVQGSQLTHVLCFLDLD 523

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK IND  GH  GD+++  ++  +         + RLGG+EFA         EA + AN
Sbjct: 524 QFKIINDTCGHAAGDELLRQIAGLIGDNLKPNDTLARLGGDEFAVLMRDCQLTEAVVAAN 583

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
           ++   ++  Q  I       + +S G+AE C+     S ++  AD A Y AK  GRNRV 
Sbjct: 584 EILDKVKKFQF-IWKKSCFSVGVSIGVAEICNTSGNTSEVLIHADLACYAAKDLGRNRVH 642

Query: 257 CFSD 260
            + D
Sbjct: 643 TYHD 646


>gi|83645731|ref|YP_434166.1| GGDEF domain-containing protein [Hahella chejuensis KCTC 2396]
 gi|83633774|gb|ABC29741.1| FOG: GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 658

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 17/170 (10%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKL-SIVFFDIDYFKQINDNFGH 148
           +  ++  L++ D L+ L N + F   L         N+ L ++++ DID+FK IND  GH
Sbjct: 477 TEQKLRHLAQYDSLTSLPNRALFYDRLNQALARSHRNQTLFALMYLDIDHFKSINDTHGH 536

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-----LGSSEQEAAILANDLRKII 203
            VGD++++  S ++ ++      + RLGG+EF   A      G +E  A  +   +++  
Sbjct: 537 GVGDELLSAFSSRIRLIIRESDTLARLGGDEFVIIAENISVQGDAEHIAQKILWAMKQAF 596

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           + ++++I  G SI + +        H      ++  AD+ALY AK +GRN
Sbjct: 597 QLNELSIQVGTSIGVALPP-----PHAVNADDLVKMADKALYSAKAAGRN 641


>gi|22127604|ref|NP_671027.1| hypothetical protein y3730 [Yersinia pestis KIM 10]
 gi|45443466|ref|NP_995005.1| hypothetical protein YP_3734 [Yersinia pestis biovar Microtus str.
           91001]
 gi|51594943|ref|YP_069134.1| hypothetical protein YPTB0592 [Yersinia pseudotuberculosis IP
           32953]
 gi|108810485|ref|YP_646252.1| hypothetical protein YPN_0320 [Yersinia pestis Nepal516]
 gi|153949954|ref|YP_001402442.1| GGDEF domain-containing protein [Yersinia pseudotuberculosis IP
           31758]
 gi|167426001|ref|ZP_02317754.1| ggdef domain protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|218927646|ref|YP_002345521.1| hypothetical protein YPO0449 [Yersinia pestis CO92]
 gi|229900673|ref|ZP_04515797.1| putative exported protein [Yersinia pestis Nepal516]
 gi|270487962|ref|ZP_06205036.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis KIM
           D27]
 gi|21960713|gb|AAM87278.1|AE013976_6 hypothetical [Yersinia pestis KIM 10]
 gi|45438335|gb|AAS63882.1| putative exported protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51588225|emb|CAH19832.1| putative exported protein [Yersinia pseudotuberculosis IP 32953]
 gi|108774133|gb|ABG16652.1| hypothetical protein YPN_0320 [Yersinia pestis Nepal516]
 gi|115346257|emb|CAL19128.1| putative exported protein [Yersinia pestis CO92]
 gi|152961449|gb|ABS48910.1| putative diguanylate cyclase, GGDEF domain [Yersinia
           pseudotuberculosis IP 31758]
 gi|167054924|gb|EDR64724.1| ggdef domain protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229682012|gb|EEO78104.1| putative exported protein [Yersinia pestis Nepal516]
 gi|270336466|gb|EFA47243.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis KIM
           D27]
 gi|320016988|gb|ADW00560.1| putative exported protein [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 425

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 11/168 (6%)

Query: 107 DCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N + F   L          E  +++F D D+FK +NDN+GH  GD V+  ++ 
Sbjct: 254 DSLTGLANRTFFEGRLSRTLNDCQPGEHTAVLFLDGDHFKDVNDNYGHAAGDLVLTTIAV 313

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI--SSGPSIHI 218
           ++  +      V RLGG+EFA         +  +   D   II++  + I  + G  I +
Sbjct: 314 RIRALLRETDLVARLGGDEFAVLLTPIHNLDDVLTIAD--HIIDSMALPIILAEGCEITV 371

Query: 219 TISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           ++S GIA    H +    ++ RAD+A+Y AKK+ R+    F+   N T
Sbjct: 372 SLSIGIAVYPDHAQTPEKLLQRADEAMYQAKKNFRSGKRIFAYQPNTT 419


>gi|317151753|ref|YP_004119801.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942004|gb|ADU61055.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
          Length = 352

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 72/139 (51%), Gaps = 12/139 (8%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM--FVGRLGGEEFAAAALG 186
           LS++  D+D+FK++ND FGH  GD V+  L+ +++         F  R GGEE   A   
Sbjct: 214 LSLMMIDVDHFKRVNDTFGHQAGDDVLHALA-RIITAHAIQYQGFAARYGGEELVVAVRN 272

Query: 187 SSEQEAAILANDLRKIIEN------SQINISSGPSIHITISAGIAERCHKE-PISTIIYR 239
                A + A  LR  +EN      ++  +S  P +  T+S G+AE C  +   + +I  
Sbjct: 273 MPLDTAVLKAEALRMDVENYDFRTRTEGRLSEIP-LQFTVSIGVAE-CRPDWDAARLISA 330

Query: 240 ADQALYVAKKSGRNRVVCF 258
           AD A+Y AK  GRNRV  +
Sbjct: 331 ADTAMYEAKAHGRNRVNAY 349


>gi|261251711|ref|ZP_05944285.1| hypothetical protein VIA_001732 [Vibrio orientalis CIP 102891]
 gi|260938584|gb|EEX94572.1| hypothetical protein VIA_001732 [Vibrio orientalis CIP 102891]
          Length = 826

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 15/144 (10%)

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
           S N    +++ D+D FK IND+ GH  GD ++  +S+ L  + G   FV R+GG+EF   
Sbjct: 417 SNNSPFLLLYLDVDEFKTINDSLGHASGDNLLVSISEILTKLIGDTGFVARMGGDEFMIV 476

Query: 184 ALGSSEQEAAILANDLRKI------IENSQINISSGPSIHITISAGIAE-RCHKEPISTI 236
                 +E   +A+ + K       IE+  I +S+        S GI +   H E   T+
Sbjct: 477 LSDMDSEEGERVADQINKALRMPYYIEDRMIFVSA--------SIGICQFPIHGEDGETL 528

Query: 237 IYRADQALYVAKKSGRNRVVCFSD 260
           +  AD A+Y AK++GR++   ++D
Sbjct: 529 VRNADTAMYHAKRNGRDQFRIYAD 552


>gi|225390496|ref|ZP_03760220.1| hypothetical protein CLOSTASPAR_04251 [Clostridium asparagiforme
           DSM 15981]
 gi|225043425|gb|EEG53671.1| hypothetical protein CLOSTASPAR_04251 [Clostridium asparagiforme
           DSM 15981]
          Length = 1298

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 8/162 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           +R D L+GLLN +A  + + +Y    N+  +++  DID FK +ND +GH  GD V+  ++
Sbjct: 173 ARRDSLTGLLNRTACKTLINAYQDWKNQICALMIVDIDNFKTLNDTWGHLFGDTVLTEIA 232

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHI 218
            +L  +F     VGR+GG+EF       ++      A+  ++I+++  ++  +   ++ +
Sbjct: 233 RRLQALFRRSDVVGRIGGDEFIIFLRDLNDLNQP--AHHGQRIVQSIGELRSALKNAVEV 290

Query: 219 TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           T S GIA           ++ RAD ALY  K++G+NR   ++
Sbjct: 291 TCSVGIAVSPRDGGSFEQLLERADCALYWGKRNGKNRYTVYA 332


>gi|224373338|ref|YP_002607710.1| sensory box/ggdef family protein [Nautilia profundicola AmH]
 gi|223589519|gb|ACM93255.1| sensory box/ggdef family protein [Nautilia profundicola AmH]
          Length = 652

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 82/163 (50%), Gaps = 15/163 (9%)

Query: 107 DCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ L N    + ++  L S N+K ++VF DID FK IND FGH VGD++I  +S  L 
Sbjct: 239 DSLTRLKNRKFLNEYLVKLISENQKFAVVFIDIDNFKDINDFFGHSVGDEIIIEISSILS 298

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILANDLRKIIENSQINISSGPSIHI 218
                   V R+GG+EF       + +E       +L N L +       NI +      
Sbjct: 299 KHVKNHEIVARIGGDEFVLVFQEYNNEEDLKERLDLLLNSLHRTWTIHNQNIGT------ 352

Query: 219 TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           T+S G+AE     + +  ++  AD ALY AKK G+N+ V F +
Sbjct: 353 TVSIGVAEFPKTAKSVEELLKFADIALYEAKKMGKNKYVIFDE 395


>gi|329849066|ref|ZP_08264094.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
 gi|328844129|gb|EGF93698.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
          Length = 747

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 87/170 (51%), Gaps = 11/170 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D L+GL N +  +  LG         + ++ ++  D+D+FK +ND+ GH +G
Sbjct: 267 RVRYLAMHDALTGLPNRTLLMDRLGQAIAHARRDHSQVGLLLLDLDHFKHVNDSLGHFIG 326

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINI 210
           D ++  ++ +L  V        RLGG+EF  AA   +S  +A ILA  +   +E   + +
Sbjct: 327 DGLLEEVARRLRSVLRESDTPARLGGDEFVIAASNLNSPADAEILARRILTALE--PVCV 384

Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             G ++ I  S GIA      +  ++++  AD A+Y AKK GR     F+
Sbjct: 385 VQGHNLRIGTSIGIAMYPGDGDNPASLLQAADTAMYQAKKKGRGTYRLFT 434


>gi|225386666|ref|ZP_03756430.1| hypothetical protein CLOSTASPAR_00414 [Clostridium asparagiforme
           DSM 15981]
 gi|225047364|gb|EEG57610.1| hypothetical protein CLOSTASPAR_00414 [Clostridium asparagiforme
           DSM 15981]
          Length = 682

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 85/170 (50%), Gaps = 6/170 (3%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVG 151
           Y +    +R D L+GLLN   F   L    EK     L++V F++D FK  N  +G+  G
Sbjct: 295 YEKAYLEARTDELTGLLNRKYFYEVLEENYEKCRKTSLTLVIFNVDDFKLYNQLYGNNEG 354

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DK +  ++  +    G+  +  R  G+EFAA         A  LA ++ + I+N   N S
Sbjct: 355 DKALVHIAQIIKGTVGSNGYCARYSGKEFAAILPDYDIYSAQNLAENISRQIQNMNRNSS 414

Query: 212 SGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                 +T+S GI A       ++ ++  AD+A+Y  K+SG+N ++ +SD
Sbjct: 415 DTYLKTLTVSCGICAVPYAASSLNELVSNADRAVYHVKRSGKNGILVYSD 464


>gi|39933363|ref|NP_945639.1| diguanylate cyclase [Rhodopseudomonas palustris CGA009]
 gi|192288720|ref|YP_001989325.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
 gi|39652988|emb|CAE25730.1| putative diguanylate cyclase (GGDEF) with HAMP domain
           [Rhodopseudomonas palustris CGA009]
 gi|192282469|gb|ACE98849.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
          Length = 557

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 16/183 (8%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
           G   +EL  S +R++ ++ +D LSGL N     S L            +L+++  D+D+F
Sbjct: 362 GQRERELVASNSRLTVMASMDLLSGLANRRGLQSRLDFEWMKGQQTGHRLALMMIDVDHF 421

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           K  ND++GHP GD  ++ + + L  V   T  F  R GGEEF      +    A  +   
Sbjct: 422 KLFNDSYGHPEGDACLSRIGETLAAVADQTGGFAARYGGEEFCLLLPETGIGRALQVGEL 481

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-----HKEPISTIIYRADQALYVAKKSGRN 253
           +R  +E   +   +    H+T+S G+A  C     H  P + +I  AD ALY AK  GRN
Sbjct: 482 VRTTVEQLALPHKTSAFEHVTVSIGVA--CTLPSEHASP-AELIEAADAALYAAKHRGRN 538

Query: 254 RVV 256
            VV
Sbjct: 539 NVV 541


>gi|258624694|ref|ZP_05719628.1| PAS domain S-box/GGDEF domain protein [Vibrio mimicus VM603]
 gi|258582981|gb|EEW07796.1| PAS domain S-box/GGDEF domain protein [Vibrio mimicus VM603]
          Length = 684

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGS--YNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+GL N   F   L     NE  L +++ DID FK IND+ GH +GDKVI  ++ 
Sbjct: 256 AHIDSLTGLYNRHGFTKRLEQCIQNETPLVLLYLDIDNFKNINDSLGHHIGDKVIKEVAA 315

Query: 161 QLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           +L  +      +G LGG+EF          + A +LA+ +  +I N   ++    S  + 
Sbjct: 316 RLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLI-NQPFDLHHF-SKRLA 373

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +           ++  AD A+Y AK+ GRNR++ F+D  N   
Sbjct: 374 CSIGSVRYPGDGTDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEA 421


>gi|149377589|ref|ZP_01895328.1| SENSORY TRANSDUCTION HISTIDINE KINASE [Marinobacter algicola DG893]
 gi|149358131|gb|EDM46614.1| SENSORY TRANSDUCTION HISTIDINE KINASE [Marinobacter algicola DG893]
          Length = 980

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 99/208 (47%), Gaps = 16/208 (7%)

Query: 61  LEYILVENLSLVIISITISLLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           ++Y L+    L + ++ +  LL Y +   G + +EL  + +R++ LS  D L+ + N S 
Sbjct: 759 VDYTLM--FQLTVGAVVLVGLLCYWNRKLGRLNRELAAANDRLAHLSVTDDLTQIGNRSY 816

Query: 118 FISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           F             +    ++   D D+FK+IND +GH  GD+ +  L+D +   F    
Sbjct: 817 FDREFSKSFHWCQRHGAGFAVAMVDADHFKEINDTYGHDAGDRCLVALADTMRTHFRRDT 876

Query: 171 -FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC- 228
             + R GGEEF      S  +E        R+ +   Q    +   I  T+S G+A    
Sbjct: 877 DRLTRFGGEEFVMFTSFSDREELVSRLEGFREGLA-GQTTCCNDEQIRFTVSIGLATGTP 935

Query: 229 HKEPISTIIYR-ADQALYVAKKSGRNRV 255
            K+ +     R AD+ALY+AK++GRNR+
Sbjct: 936 GKDTVPAEFLRLADKALYLAKQNGRNRL 963


>gi|332142058|ref|YP_004427796.1| sensory box/GGDEF family protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552080|gb|AEA98798.1| sensory box/GGDEF family protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 322

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 99/207 (47%), Gaps = 21/207 (10%)

Query: 72  VIISITISLLLGYISGS------ILKELFI---SYNRISQLSRIDCLSGLLNHSAFISSL 122
           V + I+IS L   +S +      IL++L +    Y  + + +  D L+GL N   F   L
Sbjct: 116 VSVEISISSLPEELSANNSLFICILRDLTLHKAEYATLKKKAETDFLTGLANRHKFSDYL 175

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGR 174
                   S N  +S++  DID+FK  ND +GH  GD+ +  + D L + +        R
Sbjct: 176 TRQWILCNSNNLPISLILIDIDHFKLFNDEYGHIAGDRCLKRIGDLLDLSMPNRDTLAAR 235

Query: 175 LGGEEFAAAALGSSEQEAAILANDL-RKIIENSQINISSGPSIHITISAGIA--ERCHKE 231
            GGEEFA      S Q A +LA  + R + + S  +     +  +T+S G+A  E    E
Sbjct: 236 YGGEEFAIVLPNCSAQTAQLLAIRIKRHLAQLSSRHFVFSSNSRLTVSMGVATNENHRYE 295

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCF 258
              +++  AD  LY AK  GR++ +C+
Sbjct: 296 SKESLLNAADTLLYQAKAQGRDQ-ICY 321


>gi|300919471|ref|ZP_07135971.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
 gi|300413457|gb|EFJ96767.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
          Length = 516

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 74  SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQANNNKVGVVYLDLDNFK 133

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S    E  A+ + 
Sbjct: 134 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRIL 193

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR       I + +  S+ I++S       H    +TII  AD A+Y AK+ GR +  
Sbjct: 194 TRLRLPFRIGLIEVYTSCSVGISLSPE-----HGSDSATIIRHADTAMYTAKEGGRGQFC 248

Query: 257 CFS 259
            F+
Sbjct: 249 VFT 251


>gi|238798138|ref|ZP_04641625.1| hypothetical protein ymoll0001_18060 [Yersinia mollaretii ATCC
           43969]
 gi|238717992|gb|EEQ09821.1| hypothetical protein ymoll0001_18060 [Yersinia mollaretii ATCC
           43969]
          Length = 572

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 84/176 (47%), Gaps = 13/176 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           +L  +  R+   +R D L+ L N   F   L          +  L+I+  DIDYFK  ND
Sbjct: 389 KLIKANRRLEIQARTDSLTKLPNRREFKKVLAHEFMRAKRSDSPLAILMIDIDYFKNFND 448

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  L          V R GGEEFAA    + ++ A+++A  + + I
Sbjct: 449 YYGHISGDACLRLVARALRKSLKRSTDIVARYGGEEFAAILPDTDQKGASLVAEHILQSI 508

Query: 204 ENSQINISSGPSIHITISAGIA-ERCHKEP----ISTIIYRADQALYVAKKSGRNR 254
               I  S      +TIS G+   + H+       + ++  ADQALY +KK+GRN+
Sbjct: 509 RAMGIKHSDSKFRKVTISLGVTVYQAHQHAGITDQADLMLTADQALYYSKKNGRNQ 564


>gi|225374818|ref|ZP_03752039.1| hypothetical protein ROSEINA2194_00438 [Roseburia inulinivorans DSM
           16841]
 gi|225213387|gb|EEG95741.1| hypothetical protein ROSEINA2194_00438 [Roseburia inulinivorans DSM
           16841]
          Length = 555

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 87/177 (49%), Gaps = 19/177 (10%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-----------LSIVFFDIDYFKQINDNFG 147
           ++ + S  D ++GL N       L  Y++K           L++   DID+FKQ NDN+G
Sbjct: 360 KLLKQSETDQMTGLANRY----RLNDYSDKVLDYCYEHRLPLAMEILDIDFFKQYNDNYG 415

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+ I  ++D+L  +     F  R GG+EF     G+S +E    A  LR+ I + +
Sbjct: 416 HQQGDECIIAIADELKKMEDRQTFCARYGGDEFIIIYAGASAEEVYAKAAALRQNIMDLK 475

Query: 208 INISSGPSIHI-TISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDI 261
           +      ++ I TIS GI+    +    +   ++ AD  LY  KK  RN  +C +DI
Sbjct: 476 LEHLYSKALPIVTISQGISYGVPENGNRSWDFLHTADMLLYQVKKRSRND-ICIADI 531


>gi|119483385|ref|ZP_01618799.1| PleD-like protein [Lyngbya sp. PCC 8106]
 gi|119458152|gb|EAW39274.1| PleD-like protein [Lyngbya sp. PCC 8106]
          Length = 638

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 74/137 (54%), Gaps = 18/137 (13%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALG 186
           +L ++  D+DYFKQ ND +GHP GD+ +  ++  L  V   P  F+ R GGEEF A  L 
Sbjct: 496 QLILILCDLDYFKQYNDTYGHPTGDQCLLKVAQILNQVIQRPADFIARYGGEEF-AIILP 554

Query: 187 SSEQEAAILANDLRKIIENSQ-----INISSGPSI---HITISAGIAERCH--KEPISTI 236
           +++ E  I       +I+N Q     +NI    S+    +T+S G+A      +  +  +
Sbjct: 555 NTDVEGGI------HVIKNIQNKLYTLNIPHTNSLVDNQVTLSFGLASTYPNLQSSVQAL 608

Query: 237 IYRADQALYVAKKSGRN 253
           I RADQALY  K+ GRN
Sbjct: 609 INRADQALYQTKQRGRN 625


>gi|312197315|ref|YP_004017376.1| diguanylate cyclase [Frankia sp. EuI1c]
 gi|311228651|gb|ADP81506.1| diguanylate cyclase [Frankia sp. EuI1c]
          Length = 531

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 98/217 (45%), Gaps = 25/217 (11%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---- 123
            +SL+++++   ++    +  +L E+ +   ++   +  D L+GL N + F   L     
Sbjct: 308 TVSLLVLALARQMMTIAENTHLLAEVRVREGQLRHQAFHDPLTGLANRALFSRRLARAVG 367

Query: 124 -----------------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
                            +  E ++++F D+D+FK +ND FGH VGD+++   + +L    
Sbjct: 368 GDHPPSGAGSTPGGGALAGREAVAVLFVDLDHFKGVNDAFGHAVGDELLKISAARLCAAV 427

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                V RLGG+EFA    G    +   +A  L   +E  +    +G       S G+  
Sbjct: 428 RATDTVARLGGDEFAVILAGHGPDKPVQIAQRLAAAVE--EPCELAGRRYDPRASLGLVT 485

Query: 227 RCHKEPI--STIIYRADQALYVAKKSGRNRVVCFSDI 261
             H  P    T++++AD A+Y AK+    R+V +  +
Sbjct: 486 LDHAGPTCPDTLLHQADLAMYAAKRERSRRLVVYDPV 522


>gi|170744578|ref|YP_001773233.1| diguanylate cyclase [Methylobacterium sp. 4-46]
 gi|168198852|gb|ACA20799.1| diguanylate cyclase [Methylobacterium sp. 4-46]
          Length = 438

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 9/174 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-GSYNEK-----LSIVFFDIDYFKQIND 144
           +++  +  R++  +  D L+GLLN   F ++  G + E      + I+  DID FK++ND
Sbjct: 251 RQIAAANARLAVQADTDPLTGLLNRRGFDAAFAGLWREPGRGRPVGILLADIDAFKRLND 310

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH  GD+ +  ++  +         V R GGEEF A     +  E    A   R  + 
Sbjct: 311 SAGHAAGDRCLEAVAAAIRASLPEAALVARYGGEEFVALLADPAPGELLRAAEATRAAVA 370

Query: 205 NSQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRV 255
                    P   +T+S G+AE      ++ +  +I  AD ALY AK  GRNRV
Sbjct: 371 GLDRPHPLAPEGIVTVSIGVAESAGAVDRDALDRLIAEADLALYRAKAEGRNRV 424


>gi|146338453|ref|YP_001203501.1| hypothetical protein BRADO1369 [Bradyrhizobium sp. ORS278]
 gi|146191259|emb|CAL75264.1| putative membrane protein [Bradyrhizobium sp. ORS278]
          Length = 415

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 3/137 (2%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
               +++  D+D FK INDN+GH  GD  +   +            + R GG+EF     
Sbjct: 256 GRAFALLVIDLDGFKLINDNYGHATGDACLQHFTLMAQTRLRPGDMLARTGGDEFCILLP 315

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQA 243
            SS +E A++A  + ++  +      +G  + I +S G+AE           ++ RADQA
Sbjct: 316 SSSVREGAMIARRILQVCRDDA-EACAGADVPIEVSIGVAEWTRDVGAFPDRVMARADQA 374

Query: 244 LYVAKKSGRNRVVCFSD 260
           LY AKK G++R   + D
Sbjct: 375 LYAAKKDGKSRFAVYQD 391


>gi|291531686|emb|CBK97271.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain [Eubacterium
           siraeum 70/3]
          Length = 452

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
            R+ QL  +D  +GLLN  A  + +        N K      DID FK  ND +GH  GD
Sbjct: 287 QRMIQLVELDSTTGLLNKLATTNHIQRLISEKTNAKSFFAMLDIDDFKAFNDTYGHSFGD 346

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  +   L   F   + VGR GG+EF   A G+SE   + + +D    +E S      
Sbjct: 347 EVLRTVGKLLSRKFPNAV-VGRFGGDEFIVFARGTSE---SAVVDDFEDFLEVSGKAEIG 402

Query: 213 GPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G    I  S GIA  E C  +  +     AD+ LY AKK G++R+
Sbjct: 403 GKRYTIKCSVGIAWSESCDVD-YAQYFDEADEQLYRAKKEGKHRI 446


>gi|269102356|ref|ZP_06155053.1| hypothetical membrane spanning protein [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162254|gb|EEZ40750.1| hypothetical membrane spanning protein [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 565

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 18/165 (10%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHPV 150
           ++  L R + L GL      I +   YN  L         +  FDID FKQIND++GH  
Sbjct: 409 KVVHLQRENVLDGL----TLIGNRKKYNNTLKEIGNRPYYLALFDIDDFKQINDHYGHDF 464

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  +S ++  +      + R+GGEEFA               + +R+ I+N +   
Sbjct: 465 GDLVLQEISQKIDFILPKVAQIFRIGGEEFAIVIRHHDPLFVKREMDRVRQFIQNIKW-- 522

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               S+ +T+S G+    +   I  ++   D+ LY+AKK G+NRV
Sbjct: 523 -PDESLQVTVSMGVELSVNGSDIYKLV---DEKLYLAKKLGKNRV 563


>gi|240140674|ref|YP_002965154.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS/PAC sensor [Methylobacterium extorquens AM1]
 gi|240010651|gb|ACS41877.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS/PAC sensor [Methylobacterium extorquens AM1]
          Length = 700

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 14/178 (7%)

Query: 99  RISQLSRIDCLSGLLNHS-------AFISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPV 150
           RI  ++R D L+ L N +        ++++L +  E  L+++  D+D FK +ND+FGH V
Sbjct: 260 RIIHMARHDGLTDLPNRTHLREVGAEWLAALRTAAEAPLAVLCLDLDRFKPVNDSFGHAV 319

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD ++  ++D+L     +   V RLGG+EFA     S  ++AA  A    ++IE      
Sbjct: 320 GDALLRAVADRLRGHVRSHDVVARLGGDEFAVL---SRVEDAAAAAALAERLIETVAAPY 376

Query: 211 S-SGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           +  G ++ I +SAGI  AE      I  ++  AD ALY AK  GR  V  F    + T
Sbjct: 377 TLDGITVEIGMSAGIALAEGDVPHDIERLLKEADLALYEAKTEGRGTVRLFEPQMDET 434


>gi|238063193|ref|ZP_04607902.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
 gi|237885004|gb|EEP73832.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
          Length = 556

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 95/196 (48%), Gaps = 23/196 (11%)

Query: 89  ILKELFISYN--RIS----QLSRIDCLSGLLNHSAFISSLG----------SYNEK---L 129
           +L  LF  Y   R++    QL  +D L+GL N  A ++ +           + NE    L
Sbjct: 223 VLVPLFAVYRMARLAAEQEQLGALDPLTGLPNRKALLAEVAEQVHLHAERSARNEPDAHL 282

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  D+D FK +ND  GH VGD+++  +S +L    G    + RLGG+EFA  + G ++
Sbjct: 283 ALLLIDLDRFKNVNDALGHAVGDRLLIEVSARLAAAVGERDLLARLGGDEFAIVSTGLAD 342

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAK 248
            +AA    D         +++   P + +  S GIA    H E  +T++  AD A+Y AK
Sbjct: 343 VDAARATADRVTAALAEPVSLDGLP-LDVGGSIGIAMYPEHGEDFATLMRHADVAMYDAK 401

Query: 249 KSGRNRVVCFSDIENN 264
              RN  V     E++
Sbjct: 402 H--RNDTVAVYAAESD 415


>gi|83648653|ref|YP_437088.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83636696|gb|ABC32663.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 1263

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 87/172 (50%), Gaps = 19/172 (11%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N +     LG           K++IVF DID FK IND+ GH  GD ++  ++
Sbjct: 688 DDLTGLPNRNMMRDRLGQELWRAARNKHKVAIVFLDIDQFKLINDSLGHNAGDAMLKVIA 747

Query: 160 DQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            +L  +      V R GG+EF      +   E+ A+ ++  +  I ++ Q++      IH
Sbjct: 748 KRLTGMARASDTVVRYGGDEFVIILPDISPPEKVASFISRLMEVIAQSIQLDHR---DIH 804

Query: 218 ITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           ++ S G++    +  H E    +I  AD A+Y+AK+ GRNR   F++  N T
Sbjct: 805 VSASIGVSIYPQDGDHPE---VLIKNADIAMYLAKEEGRNRFHFFTEDLNKT 853


>gi|317407521|gb|EFV87475.1| GGDEF protein [Achromobacter xylosoxidans C54]
          Length = 391

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 17/208 (8%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFI------SYNRISQLSRIDCLSGLLNHS 116
           ++ VE  S+ +++  I++  G +   +L    I      ++ ++   S+ D L+ L N  
Sbjct: 174 WVAVEGPSVQLLASNITMYEGVLYSVLLPMTLIKLIREETHAQLVHESQTDYLTRLGNRR 233

Query: 117 AFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
            F        +  +  E ++++ FD+D FK IND +GH  GD V+A  +       G  +
Sbjct: 234 WFFEQGARLIAASAGREPIAVLAFDLDQFKAINDRYGHHTGDLVLAAFATVARDALGPQV 293

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            + RLGGEEFAA   G   + A  L     +    +  N + G  I  T+S G+A  C  
Sbjct: 294 ILARLGGEEFAALLAGDDARRAHQLGAAAARRFATAIANPADGLGIAATVSIGLA--CFD 351

Query: 231 E---PISTIIYRADQALYVAKKSGRNRV 255
           E   P++  + RAD ALY AK  G NR+
Sbjct: 352 EDVPPLADALARADLALYRAKSLGGNRL 379


>gi|295108199|emb|CBL22152.1| diguanylate cyclase (GGDEF) domain [Ruminococcus obeum A2-162]
          Length = 411

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 8/159 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-NEKLS--IVFFDIDYFKQINDNFGHPVGDKV 154
           NR+  L++ D ++G+ N  +  S + +Y  E+ +  +   D D FK IND +GH VGDKV
Sbjct: 238 NRLLYLAQTDLMTGICNRGSGESRISAYLKERKAGLLCLIDCDKFKSINDTYGHAVGDKV 297

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINIS-- 211
           I  +++ L  +        RLGG+EFA    G  EQ+AA       ++ EN  QI+I   
Sbjct: 298 IIAIAETLQKLCRDKDVAFRLGGDEFAIFMPGMMEQKAA--EKFFARLFENIRQIDIEEM 355

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
            G SI I++ A   E   +     +   AD  +Y +K+ 
Sbjct: 356 QGKSIEISMGACFYEGTEEVSFDELYKNADSVMYQSKEK 394


>gi|260771163|ref|ZP_05880090.1| hypothetical protein VFA_004228 [Vibrio furnissii CIP 102972]
 gi|260613760|gb|EEX38952.1| hypothetical protein VFA_004228 [Vibrio furnissii CIP 102972]
 gi|315179231|gb|ADT86145.1| c-di-GMP phosphodiesterase A-related protein [Vibrio furnissii NCTC
           11218]
          Length = 659

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 11/166 (6%)

Query: 106 IDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           ID L+GL N   F   L      +  L +++ DID FK IND+ GH +GDKVI  +S +L
Sbjct: 233 IDTLTGLYNRLGFTKRLEHLIQNDTPLVMLYLDIDNFKNINDSLGHHIGDKVIKEVSSRL 292

Query: 163 VVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
             +      +G LGG+EF          + A +LA  +  +I N   ++         ++
Sbjct: 293 KRLLPPHAVLGHLGGDEFGLILPEPEHNRSAEMLAERIISLI-NQPFDLH---HFSKRLA 348

Query: 222 AGIAERCHKEPIS---TIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             I   C+    S    ++  AD A+Y AK  GRNR++ F+D  N 
Sbjct: 349 CSIGSVCYPGDGSDARVLLQNADTAMYEAKDRGRNRLIKFNDQMNK 394


>gi|237735696|ref|ZP_04566177.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229381441|gb|EEO31532.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 317

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 25/204 (12%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRI--------------DCLSGLLNHSAFISSLG 123
           ++L +GY     +++ F++ + I + +R+              D L+GL N     + L 
Sbjct: 112 MALFVGYYHYQSMRQTFLNQSIILEKNRMIEEKSAELDFIAHHDSLTGLQNRRYLANCLN 171

Query: 124 S-YNE------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
           + Y E      K  +   DID FK  ND FGH  GD+ +  +S+ L +   +  F+ R G
Sbjct: 172 NIYLESRDSQLKTGVFIIDIDDFKSYNDTFGHIKGDECLKRVSNALNLCL-SEGFLIRYG 230

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSIHITISAGIAERCHKEPI 233
           GEEF      +  +E   +  +L   +E   +   N SS   + ++I   I     +E  
Sbjct: 231 GEEFVYLLKNTDLEEMQRIGTELCHTVERLHLLMPNTSSREYLTVSIGGAIGVLNGEESW 290

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
             ++ +ADQALY AK + +N+ +C
Sbjct: 291 QAVLEQADQALYKAKNTNKNKCIC 314


>gi|188583702|ref|YP_001927147.1| diguanylate cyclase/phosphodiesterase [Methylobacterium populi
           BJ001]
 gi|179347200|gb|ACB82612.1| diguanylate cyclase/phosphodiesterase [Methylobacterium populi
           BJ001]
          Length = 574

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 15/168 (8%)

Query: 99  RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R + L+R + L+GL N         A ++     +  L+++  D+D FK +ND  GHPVG
Sbjct: 135 RGAALARQEPLTGLCNRVGLHDRLDAALAEAARTDAPLAVLMLDLDRFKAVNDTLGHPVG 194

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-----EQEAAILANDLRKIIENS 206
           D ++  ++++L     +   V RLGG+EFA    G S      Q A  LA  L  ++   
Sbjct: 195 DALLRKVAERLRKATRSGDVVARLGGDEFAIIQGGPSSGAEQPQAAEALARRLVDLV--G 252

Query: 207 QINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
           +  +  G  +++ +S G+A           ++  AD ALY AK  GR 
Sbjct: 253 RTYVVDGHMLNVGVSVGVALSPADGRNADDLLKHADLALYRAKAEGRG 300


>gi|170727093|ref|YP_001761119.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169812440|gb|ACA87024.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
          Length = 651

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 18/183 (9%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIN 143
           K L  S + + + S ID L+GL N   F+  L    +       +  I   DID+FK +N
Sbjct: 466 KSLQDSNDELYKQSHIDSLTGLYNRRYFLDYLNQLTQLSQRQASQACIAIVDIDHFKAVN 525

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH +GD+V+  +S  L         V R GGEEF    L   +   +I + +L    
Sbjct: 526 DTYGHDMGDEVLIQISKALHANIRDSDLVVRWGGEEF-VILLCWPQNYTSIGSEELLAKF 584

Query: 204 ENSQINISSGP------SIHITISAGIAERCHKEPIS----TIIYRADQALYVAKKSGRN 253
           E  ++ + + P      +I IT+S GI++    + ++    + +  AD+ALY AK  GRN
Sbjct: 585 ERIRLAVCNKPLVMDKLTIPITVSIGISQPLDAKELTLEWHSALEHADKALYQAKGLGRN 644

Query: 254 RVV 256
            V+
Sbjct: 645 CVI 647


>gi|126698581|ref|YP_001087478.1| putative signaling protein [Clostridium difficile 630]
          Length = 1184

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++ + +  D L+ L N  A  S +  Y       K +++  DID FK INDN GH  GD 
Sbjct: 707 KLKERAEKDPLTDLYNKKASQSLIEEYITLDKKRKGALMIIDIDDFKGINDNLGHLYGDA 766

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISS 212
           V++ +++ L+ +F     VGR+GG+EF       SE    I  A +L K  E S   +  
Sbjct: 767 VLSEIANDLINLFRATDIVGRIGGDEFIVFIKDISETRDIINKAEELVKTFERSF--LGK 824

Query: 213 GPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259
           G +  I++S GIA+          ++R AD ALY AK  G+N   C++
Sbjct: 825 GRNYKISLSVGIAKFPQDGMDYMTLFRNADIALYSAKGKGKN---CYT 869


>gi|71906314|ref|YP_283901.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71845935|gb|AAZ45431.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 925

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 17/186 (9%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLN----HSAFISSLGSYNE---KLSIVFFDIDYFKQI 142
           + EL  +  RI  L+  D L+ L N    H     +L        +L+++  D+D FK I
Sbjct: 459 ISELKATQERIRHLAHHDTLTNLANRFSLHEKLAQALAFCKRNRMQLALMLIDLDRFKTI 518

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRK 201
           ND  GH  GD+++  ++ +L         V RLGG+EF  A  G  S  +AA LA+D+ +
Sbjct: 519 NDTLGHQAGDELLVQVAKRLSHAVRESDIVARLGGDEFVIALPGIGSPADAAHLADDITR 578

Query: 202 IIENSQI----NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I    +     + + PSI I +  G         I  ++  AD A+Y AK +GR     
Sbjct: 579 EISAPYLIKGQELRTSPSIGICVYPGDGSE-----IGDLLKNADVAMYHAKANGRGNYQF 633

Query: 258 FSDIEN 263
           F++  N
Sbjct: 634 FTEDMN 639


>gi|116748952|ref|YP_845639.1| diguanylate cyclase with PAS/PAC sensor [Syntrophobacter
           fumaroxidans MPOB]
 gi|116698016|gb|ABK17204.1| diguanylate cyclase with PAS/PAC sensor [Syntrophobacter
           fumaroxidans MPOB]
          Length = 352

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 88/170 (51%), Gaps = 11/170 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPV 150
            ++ +L+ +D L+ + N  +    L      +  E+  ++++  DID+FK  ND +GH  
Sbjct: 177 RKLERLATLDGLTRVANRRSLDRFLDLEWRRTRRERAPMALILSDIDHFKLYNDTYGHLA 236

Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI- 208
           GD  +  ++  +      PM  V R GGEEFA     ++   A  +A  + + +EN ++ 
Sbjct: 237 GDDCLRAVATAIKECAKRPMDLVARYGGEEFAVVLPNTNADGAVHIAETICREVENLRVR 296

Query: 209 NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
           +  S     +T+S G+A    +E  +   ++  AD+ALY AKK GRNRVV
Sbjct: 297 HPESSTGEFLTLSCGVAAMVPREESTPEALVAAADEALYEAKKQGRNRVV 346


>gi|332671227|ref|YP_004454235.1| diguanylate cyclase/phosphodiesterase [Cellulomonas fimi ATCC 484]
 gi|332340265|gb|AEE46848.1| diguanylate cyclase/phosphodiesterase [Cellulomonas fimi ATCC 484]
          Length = 795

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 8/163 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           +S  +R D L+GL N + F   L + +     +++  D+D FK +ND+ GHP GD++++ 
Sbjct: 360 LSHQARHDPLTGLGNRAHFNDRLAASDGAGGRAVLMIDLDGFKSVNDDNGHPAGDELLSQ 419

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           ++ ++  V G    V R+GG+EF  A L     E+A      R +    +  +    ++ 
Sbjct: 420 VAARMRGVVGDRDTVARIGGDEF--AVLLEHTDESAAHDAAWRVVRAIGEAFVVDAQAVR 477

Query: 218 ITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCF 258
           +T S G+  R     + T   +  AD ALY AK +G+N+V  F
Sbjct: 478 VTASIGV--RLLDGSVGTEEALRDADLALYAAKAAGKNQVCVF 518


>gi|170025831|ref|YP_001722336.1| diguanylate cyclase [Yersinia pseudotuberculosis YPIII]
 gi|169752365|gb|ACA69883.1| diguanylate cyclase [Yersinia pseudotuberculosis YPIII]
          Length = 436

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 11/168 (6%)

Query: 107 DCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N + F   L          E  +++F D D+FK +NDN+GH  GD V+  ++ 
Sbjct: 265 DSLTGLANRTFFEGRLSRTLNDCQPGEHTAVLFLDGDHFKDVNDNYGHAAGDLVLTTIAV 324

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI--SSGPSIHI 218
           ++  +      V RLGG+EFA         +  +   D   II++  + I  + G  I +
Sbjct: 325 RIRALLRETDLVARLGGDEFAVLLTPIHNLDDVLTIAD--HIIDSMALPIILAEGCEITV 382

Query: 219 TISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           ++S GIA    H +    ++ RAD+A+Y AKK+ R+    F+   N T
Sbjct: 383 SLSIGIAVYPDHAQTPEKLLQRADEAMYQAKKNFRSGKRIFAYQPNTT 430


>gi|153824789|ref|ZP_01977456.1| GGDEF family protein [Vibrio cholerae MZO-2]
 gi|149741507|gb|EDM55537.1| GGDEF family protein [Vibrio cholerae MZO-2]
          Length = 429

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 8/132 (6%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+IND +GH  GD+++  ++  L         + R GGEEF       S +EA  
Sbjct: 299 DIDHFKKINDQYGHITGDRILQAVASCLRKNVRDGDTIIRFGGEEFLLLFQAHSNKEAWH 358

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + + LR+ +++      +  SI  T   G         +   I RAD ALY AK++GRN+
Sbjct: 359 MLDRLRQRVKDDHSLYGTTISIGFTFIDG--------SLPAAISRADTALYQAKEAGRNQ 410

Query: 255 VVCFSDIENNTC 266
           VV  S+ EN++ 
Sbjct: 411 VVADSEKENDSA 422


>gi|300694565|ref|YP_003750538.1| signal transduction ggdef domain transmembrane protein [Ralstonia
           solanacearum PSI07]
 gi|299076602|emb|CBJ35938.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum PSI07]
          Length = 505

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 18/179 (10%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           L+    +  +++ L+  D L+GL    A  ++LG+         + L+++  D+D FK  
Sbjct: 316 LRRRMEAEQKLAWLANTDGLTGLGTRRALDAALGAEWQRANRQGQPLAVLMIDVDEFKHY 375

Query: 143 NDNFGHPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           ND +GH  GD   + +A   ++ +   G   F GR GGEEF      +    A  +A  +
Sbjct: 376 NDRYGHAAGDTALRTVARCVNESIRRPGD--FAGRYGGEEFCVLLPNTDLPGAQRVAEAI 433

Query: 200 R-KIIENSQINISSGPSIHITISAGIAERCHK----EPISTIIYRADQALYVAKKSGRN 253
           R +++   + N SS     +T+S G+A    +    E  + +++RAD  LY AK  GRN
Sbjct: 434 RSRVLAAGEPNASSAHG-RLTVSIGVAAHDGRAETGETPARLLHRADLQLYEAKSGGRN 491


>gi|260775885|ref|ZP_05884781.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608301|gb|EEX34470.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 577

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 90/186 (48%), Gaps = 26/186 (13%)

Query: 92  ELFISYNRISQLSR-------IDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDID 137
           ELF +   +++L+R        D L+ + N  AF   L S  ++       L+++  DID
Sbjct: 385 ELFQANETLAKLNRDLELLSLKDALTNIANRRAFDHRLDSEWKRCHRDQTPLALIMMDID 444

Query: 138 YFKQINDNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           YFK+ ND  GH  GD    +V A L  +     G+ + V R GGEEFA     ++ +EA 
Sbjct: 445 YFKRFNDTLGHGAGDTCLKQVAAVL--ERSAQRGSDL-VARYGGEEFAVLLPNTALEEAC 501

Query: 194 ILANDLRKIIENSQINISSGP-SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKK 249
            +A  +R  +    I+    P + H+T+S G+       ++ P    +   D ALYV+K 
Sbjct: 502 AVAEKIRTAMTLEHIDHPDSPIASHVTLSMGVGAMVPESNRLP-PDYLQAVDAALYVSKD 560

Query: 250 SGRNRV 255
            GRN +
Sbjct: 561 KGRNAI 566


>gi|239993246|ref|ZP_04713770.1| Signaling protein with a acyltransferase and GGDEF domains
           [Alteromonas macleodii ATCC 27126]
          Length = 632

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           L+EL      + +L+ ID L+G  N   F                 LS++  D+D+FKQI
Sbjct: 449 LRELSEVNQELERLNAIDPLTGAHNRRHFDKRLRSEGRRSRREQTPLSLIIVDVDHFKQI 508

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND  GH  GD  +  +++        P   + R+GGEEFA     +  + A  +A ++R 
Sbjct: 509 NDQHGHDGGDACLIHVTNVFQKHIHRPTDDLCRIGGEEFAIILPNTDLEGAFHVAENMRD 568

Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +E++ ++   G  I +T SAG++      +E    +   AD+ LY AK +GRN V+
Sbjct: 569 SLESTPLDY-EGEIIKLTASAGVSTTIIIDEEHAQNLFKFADECLYEAKAAGRNTVI 624


>gi|134097423|ref|YP_001103084.1| hypothetical protein SACE_0818 [Saccharopolyspora erythraea NRRL
           2338]
 gi|291004587|ref|ZP_06562560.1| hypothetical protein SeryN2_08715 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133910046|emb|CAM00158.1| hypothetical protein SACE_0818 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 568

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 9/167 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVG 151
           ++ I++ +  D L+GL N  A    L    ++     LS+   D+D FK++ND   H  G
Sbjct: 385 HDAITRQALQDPLTGLSNRRALDERLDKLQDRHDSQPLSVALVDLDGFKEVNDRCSHAEG 444

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++  L     T  FV R GG+EF     G +   A        + ++     +S
Sbjct: 445 DDVLRVVASTLRDTLRTDDFVARYGGDEFVVLLPGVTLTAAEAALQRTVEAVDRLPYQLS 504

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            G    +T+S G+     +E    ++ RAD A+Y AK+ G N+V  F
Sbjct: 505 RG----VTLSIGVVAMRPQESGGQVLARADAAMYQAKRGGGNQVSAF 547


>gi|121999012|ref|YP_001003799.1| response regulator receiver modulated diguanylate cyclase
           [Halorhodospira halophila SL1]
 gi|121590417|gb|ABM62997.1| response regulator receiver modulated diguanylate cyclase
           [Halorhodospira halophila SL1]
          Length = 428

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 76/166 (45%), Gaps = 9/166 (5%)

Query: 104 SRIDCLSGLLNH---SAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GL N          LG       + L  +  D+D+FK IND  GH  GD V+ 
Sbjct: 265 ARRDPLTGLHNRLYLDEIAEQLGETARRTQQPLGALVVDLDHFKSINDRLGHFGGDTVLK 324

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++DQL         + R GGEEF    LG     A  L   +R  IE  ++ +  G +I
Sbjct: 325 RVADQLRDTVRRADVLVRSGGEEFYILTLGIDTAGARTLGERIRNGIETLEL-VYEGETI 383

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             + S G+A       +   +  AD A+Y AK+ GRNRV    + +
Sbjct: 384 TTSASVGVAV-LEGGSVEEALKAADLAMYEAKRQGRNRVAVLPETD 428


>gi|148549434|ref|YP_001269536.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas putida F1]
 gi|148513492|gb|ABQ80352.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas putida F1]
          Length = 334

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 11/176 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  S   + +L   D L+GL N   F   L           ++LS++  D+DYFK  N
Sbjct: 156 QQLLDSNLMLQRLMNSDGLTGLSNRRHFDEYLELEWRRAMREQQQLSLLMIDVDYFKAYN 215

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D+FGH  GD+ +  +++ +      P     R GGEEFA     +S   A ++A  LR+ 
Sbjct: 216 DSFGHLAGDEALRQVAEAIRSSCSRPTDLPARYGGEEFALVLPNTSPGGARLVAEKLRQT 275

Query: 203 IENSQI-NISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255
           +    I + +S     +T+S G+A +          +I  AD+ LY+AK  GRN+V
Sbjct: 276 VLGLGIPHTASTADTCLTVSIGLATQTPAIGSHCRQLISAADKGLYLAKNGGRNQV 331


>gi|332991922|gb|AEF01977.1| hypothetical protein ambt_02115 [Alteromonas sp. SN2]
          Length = 713

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 78/189 (41%), Gaps = 31/189 (16%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-----------------GSYNEKLSIVFF 134
           EL  +Y  + Q+S  D L+GL N     S L                    N+ L     
Sbjct: 482 ELQTAYKTLEQVSLHDSLTGLYNRHYLESQLPGELKRSAHANKHQEGHNERNQDLLCFLI 541

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+IND  GH  GDKV++  +D L  VF     + R GGEEF      S   +   
Sbjct: 542 DIDHFKRINDEHGHLAGDKVLSQFADVLREVFRQTDLLIRWGGEEFLVICRHSMRDDLPQ 601

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIA----------ERCHKEPISTIIYRADQAL 244
           LA   R  + ++  +I    S+ +T S G +          E   K   S + Y     L
Sbjct: 602 LAERCRAAVNDNVFHIDDTRSLRVTCSIGFSILPPVEHVSFEESWKSTFSVVDY----CL 657

Query: 245 YVAKKSGRN 253
           Y  K SGRN
Sbjct: 658 YATKMSGRN 666


>gi|218532082|ref|YP_002422898.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium chloromethanicum CM4]
 gi|218524385|gb|ACK84970.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium chloromethanicum CM4]
          Length = 700

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 14/178 (7%)

Query: 99  RISQLSRIDCLSGLLNHS-------AFISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPV 150
           RI  ++R D L+ L N +        ++++L +  E  L+++  D+D FK +ND+FGH V
Sbjct: 260 RIIHMARHDGLTDLPNRTHLREVGAEWLAALRTAAEAPLAVLCLDLDRFKPVNDSFGHAV 319

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD ++  ++D+L     +   V RLGG+EFA     S  ++AA  A    ++IE      
Sbjct: 320 GDALLRAVADRLRGHVRSHDVVARLGGDEFAVL---SRVEDAAAAAALAERLIETVGAPY 376

Query: 211 S-SGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           +  G ++ I +SAGI  AE      I  ++  AD ALY AK  GR  V  F    + T
Sbjct: 377 TLDGITVEIGMSAGIALAEGDVPHDIERLLKEADLALYEAKTEGRGTVRLFEPQMDET 434


>gi|146308578|ref|YP_001189043.1| cyclic nucleotide-binding protein [Pseudomonas mendocina ymp]
 gi|145576779|gb|ABP86311.1| cyclic nucleotide-binding protein [Pseudomonas mendocina ymp]
          Length = 312

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 78/165 (47%), Gaps = 16/165 (9%)

Query: 101 SQLSRIDCLSGLLNHSAFI------SSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDK 153
            Q + +D L+G  N           S+  ++N E LS++  D+D+FK  ND  GH  GD 
Sbjct: 148 EQNANVDTLTGCFNRRWLEHVFERESTRCAFNDEPLSLLMLDVDHFKAYNDQHGHLAGDY 207

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-----SQI 208
            +  ++  L         + R GGEEF       S + A  +   LR  +E      S +
Sbjct: 208 ALCLVAHTLRSQLRPKDSLIRFGGEEFVILLPEISAESARGIGERLRVSLEQIASFYSPV 267

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            I  G    +TIS G+A+   K+ +  +I RAD ALY AK+ GRN
Sbjct: 268 GILPG----VTISIGLAQMQQKDSLQGLIARADAALYQAKQQGRN 308


>gi|229170057|ref|ZP_04297748.1| Sensory box protein [Bacillus cereus AH621]
 gi|228613404|gb|EEK70538.1| Sensory box protein [Bacillus cereus AH621]
          Length = 735

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 17/179 (9%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDN 145
           L+    ++  ++  D L+GL N   F   L +           ++++F D+D FK+IND 
Sbjct: 296 LYEKQKQVEHMAFHDALTGLPNRRKFEKDLKTILNTAQNTTNDVAVMFLDLDRFKKINDR 355

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIE 204
            GH VGD ++  ++ +L     +   V R GG+EF        SE+ A+ +A  +  I+ 
Sbjct: 356 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPDMYSEKSASFMAEQILTILN 415

Query: 205 NSQI----NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              +     +S  PSI I +        +   ++ ++  AD A+Y AK +G+NR + FS
Sbjct: 416 KPYLIKDEELSVTPSIGIAMYPD-----YGTDVTELMKNADMAMYRAKANGKNRFIFFS 469


>gi|225390269|ref|ZP_03759993.1| hypothetical protein CLOSTASPAR_04020 [Clostridium asparagiforme
           DSM 15981]
 gi|225043665|gb|EEG53911.1| hypothetical protein CLOSTASPAR_04020 [Clostridium asparagiforme
           DSM 15981]
          Length = 637

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 8/157 (5%)

Query: 106 IDCLSGLLNHSAFISSL----GSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           ID L+GL N  AF   +    GS NE    +++  D D  KQ+ND +GH  GD+ +  ++
Sbjct: 477 IDLLTGLYNRRAFYRRMEELFGSPNELGACAMLMADADNLKQVNDRYGHQNGDRYLQGVA 536

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHI 218
                V      + RL G+EFAA   G S+ +E   L   LR ++      ++ G SI +
Sbjct: 537 RIFRSVCSEKSVLARLSGDEFAAFLYGCSNREELEALVERLRNVMNVETAELTGGESIPV 596

Query: 219 TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
             SAG A      E   +++  AD A+Y  K++ +N+
Sbjct: 597 RFSAGCAFYPEDGEDYGSLLKCADTAMYKVKRTRKNK 633


>gi|156935537|ref|YP_001439453.1| hypothetical protein ESA_03399 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533791|gb|ABU78617.1| hypothetical protein ESA_03399 [Cronobacter sakazakii ATCC BAA-894]
          Length = 319

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 13/159 (8%)

Query: 103 LSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++  D L+G+ N   F  S       L    E  SI++FD+D FK IND +GH  GD+V+
Sbjct: 163 MAMTDSLTGIPNRRGFYRSGERRFRALKENPEPFSILYFDLDRFKPINDLWGHAEGDEVL 222

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              + QL    G     GRLGG+EF  A L + E +     N+LR  ++    N  +G  
Sbjct: 223 KVFASQLREHLGPKDIAGRLGGDEF--AVLLARESDTQPFLNNLRASLDAH--NQRAGKP 278

Query: 216 IHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGR 252
            +I  S G+  R   + + +  ++  +D  +Y  K+  R
Sbjct: 279 YNINYSYGMLHRDSGNYDSLLEMVKESDNVMYSEKRRKR 317


>gi|153830181|ref|ZP_01982848.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|148874321|gb|EDL72456.1| GGDEF family protein [Vibrio cholerae 623-39]
          Length = 429

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 8/132 (6%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+IND +GH  GD+++  ++  L         + R GGEEF       S +EA  
Sbjct: 299 DIDHFKKINDQYGHITGDRILQAVASCLRKNVRDGDTIIRFGGEEFLLLFQAHSNKEAWY 358

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + + LR+ +++      +  SI  T   G         +   I RAD ALY AK++GRN+
Sbjct: 359 MLDRLRQRVKDDHSLYGTTISIGFTFIDG--------SLPAAISRADAALYQAKEAGRNQ 410

Query: 255 VVCFSDIENNTC 266
           V+  S+ EN++ 
Sbjct: 411 VIADSEKENDSA 422


>gi|148975770|ref|ZP_01812601.1| hypothetical protein VSWAT3_26681 [Vibrionales bacterium SWAT-3]
 gi|145964843|gb|EDK30095.1| hypothetical protein VSWAT3_26681 [Vibrionales bacterium SWAT-3]
          Length = 646

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 5/157 (3%)

Query: 107 DCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           DCL+ L N     + L +   Y     ++F D+D FK +ND +GH VGD+++  + ++L 
Sbjct: 231 DCLTELYNRRGITNLLETSIAYRSPFELMFVDLDGFKLVNDTYGHSVGDQLLKQVGERLK 290

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
            +      +GR GG+EF   A     Q   +L   +   I N   +IS   S+ +  S G
Sbjct: 291 QLINETCMIGRFGGDEFIVIAHSCRNQNIPLLCTRIIDAI-NQSFHISGIGSLSVGCSIG 349

Query: 224 IAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            A    +     +++ +A  A++ AK +GRNR   F+
Sbjct: 350 TAHFPDNAMDQESLLKQAGMAMHTAKDNGRNRFQTFT 386


>gi|146308214|ref|YP_001188679.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
 gi|145576415|gb|ABP85947.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
          Length = 726

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 12/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           ++L +L  +   + Q++  D L+ LLN   F     +  E+       L+++F D+D+FK
Sbjct: 274 NLLMQLDQAKASLEQVAHFDPLTELLNRRGFNRVFAATLEEHAITGRSLAVMFLDVDHFK 333

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND  GH  GD+++  ++ ++         + R GG+EF   A   S     +LA   +
Sbjct: 334 RVNDTLGHDAGDELLRVVAQRIRGSLRERDIIARFGGDEFCVVASLDSNAAPRVLA---Q 390

Query: 201 KIIENSQINIS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+E  +  IS +G  I +T S GI+           ++  AD ALY +K SGRN V  F
Sbjct: 391 RILEQMKEPISLTGRRIVMTTSVGISLFPQDGNSAEELLKHADLALYQSKGSGRNVVHFF 450

Query: 259 S 259
           +
Sbjct: 451 N 451


>gi|323497149|ref|ZP_08102169.1| putative periplasmic ligand-binding sensor protein [Vibrio
           sinaloensis DSM 21326]
 gi|323317724|gb|EGA70715.1| putative periplasmic ligand-binding sensor protein [Vibrio
           sinaloensis DSM 21326]
          Length = 972

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 7/163 (4%)

Query: 104 SRIDCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           +R D L+GL N  AF      +       +  S+   DID+FK IND + H +GDKV+  
Sbjct: 800 AREDQLTGLKNRRAFDEWIENVVYTSGDAKAFSLALVDIDHFKSINDTYTHLIGDKVLQT 859

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           + + +  +     FV R GGEEF    +  + ++   L   LR  ++    + S   ++ 
Sbjct: 860 VVENINKITPDNCFVARWGGEEFVIGFINWTAEDVYDLCEALRLEVKAHDYS-SVAQNLS 918

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +T+S G+    +K+    ++  AD+AL   K +GR+ +  + +
Sbjct: 919 VTVSTGLVNADNKQDFEQLLRNADRALLHVKSNGRDGICVYDN 961


>gi|307822937|ref|ZP_07653167.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylobacter tundripaludum SV96]
 gi|307735712|gb|EFO06559.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylobacter tundripaludum SV96]
          Length = 1045

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 58/163 (35%), Positives = 82/163 (50%), Gaps = 12/163 (7%)

Query: 99  RISQLSRIDCLSGLLN------HSAFISSLGSY-NEKLSIVFFDIDYFKQINDNFGHPVG 151
           RI  L+  D L+GL N      H  +  SL    N  L+++F D+D+FK IND+ GH +G
Sbjct: 613 RIHYLANFDPLTGLPNRTQLNDHLKYALSLAKRSNGHLALMFLDLDHFKDINDSLGHSIG 672

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INI 210
           D ++  L+ +L +V  T   V RLGG+EF     G     AA +A  L   I  S  I +
Sbjct: 673 DALLIELAKRLRLVLRTEDTVTRLGGDEFILLLPGVDAIGAAHVAQKLLDAIAGSYWIEL 732

Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252
                + +T S GIA        + T+   AD A+Y AK+ GR
Sbjct: 733 Y---DLALTASIGIALYPADGVDLETLSKSADAAMYRAKQEGR 772


>gi|241766173|ref|ZP_04764078.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
 gi|241363778|gb|EER59127.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
          Length = 386

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 9/165 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++++ +  D L+GL N     ++L             L+++  D+D+FK IND  GH  G
Sbjct: 201 QLTEQANRDPLTGLYNRRYLNTALPRELDASAGAGLPLAVLLMDLDHFKLINDRLGHAAG 260

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++  L+          R GGEEF     G +   A   A   R+ + + Q   +
Sbjct: 261 DDVLCQVAALLLEGTRANDICCRYGGEEFLLVLPGMALDAALARAQAFRQKVADRQW-CA 319

Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
            G  + +T+S G+A         + +I RAD+ALY AK  GRNRV
Sbjct: 320 DGQPVAVTLSVGVACTLGAALSPAALIDRADRALYQAKAEGRNRV 364


>gi|108810030|ref|YP_653946.1| hypothetical protein YPA_4040 [Yersinia pestis Antiqua]
 gi|145600440|ref|YP_001164516.1| hypothetical protein YPDSF_3185 [Yersinia pestis Pestoides F]
 gi|162419428|ref|YP_001605395.1| GGDEF domain-containing protein [Yersinia pestis Angola]
 gi|165927319|ref|ZP_02223151.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936365|ref|ZP_02224933.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008970|ref|ZP_02229868.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212136|ref|ZP_02238171.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401527|ref|ZP_02307021.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167418912|ref|ZP_02310665.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167468844|ref|ZP_02333548.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis FV-1]
 gi|186893943|ref|YP_001871055.1| diguanylate cyclase [Yersinia pseudotuberculosis PB1/+]
 gi|229836971|ref|ZP_04457136.1| putative exported protein [Yersinia pestis Pestoides A]
 gi|229840333|ref|ZP_04460492.1| putative exported protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229842413|ref|ZP_04462568.1| putative exported protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|294502546|ref|YP_003566608.1| hypothetical protein YPZ3_0436 [Yersinia pestis Z176003]
 gi|108781943|gb|ABG16001.1| hypothetical protein YPA_4040 [Yersinia pestis Antiqua]
 gi|145212136|gb|ABP41543.1| hypothetical protein YPDSF_3185 [Yersinia pestis Pestoides F]
 gi|162352243|gb|ABX86191.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis Angola]
 gi|165915481|gb|EDR34090.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920781|gb|EDR38029.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992309|gb|EDR44610.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206882|gb|EDR51362.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962906|gb|EDR58927.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048909|gb|EDR60317.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|186696969|gb|ACC87598.1| diguanylate cyclase [Yersinia pseudotuberculosis PB1/+]
 gi|229690723|gb|EEO82777.1| putative exported protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229696699|gb|EEO86746.1| putative exported protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229705914|gb|EEO91923.1| putative exported protein [Yersinia pestis Pestoides A]
 gi|262360576|gb|ACY57297.1| hypothetical protein YPD4_0388 [Yersinia pestis D106004]
 gi|262364522|gb|ACY61079.1| hypothetical protein YPD8_0389 [Yersinia pestis D182038]
 gi|294353005|gb|ADE63346.1| hypothetical protein YPZ3_0436 [Yersinia pestis Z176003]
          Length = 433

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 11/168 (6%)

Query: 107 DCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           D L+GL N + F   L          E  +++F D D+FK +NDN+GH  GD V+  ++ 
Sbjct: 262 DSLTGLANRTFFEGRLSRTLNDCQPGEHTAVLFLDGDHFKDVNDNYGHAAGDLVLTTIAV 321

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI--SSGPSIHI 218
           ++  +      V RLGG+EFA         +  +   D   II++  + I  + G  I +
Sbjct: 322 RIRALLRETDLVARLGGDEFAVLLTPIHNLDDVLTIAD--HIIDSMALPIILAEGCEITV 379

Query: 219 TISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           ++S GIA    H +    ++ RAD+A+Y AKK+ R+    F+   N T
Sbjct: 380 SLSIGIAVYPDHAQTPEKLLQRADEAMYQAKKNFRSGKRIFAYQPNTT 427


>gi|86749585|ref|YP_486081.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
 gi|86572613|gb|ABD07170.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
          Length = 427

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 106/232 (45%), Gaps = 33/232 (14%)

Query: 56  TPFYG--------LEYILVENLSLVIISITISLLL-GYISG---------SILKELFISY 97
           TP YG        L Y +    S +  +  I+LL+ G+ +G          +L  LF+S 
Sbjct: 162 TPRYGIALICILVLPYTVAMVFSPIAQTYLIALLIPGWGAGMALLLFENYDVLLHLFLSE 221

Query: 98  NRISQLSRIDCLSGLLN----HSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNF 146
                L+  D L+GL N    H  F   L       G  ++ L+++  D+D FK  ND +
Sbjct: 222 RENKWLANYDQLTGLPNRTMQHRRFDELLRDARGAPGRDDQPLTVLCLDLDGFKAANDGY 281

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD V+  ++++L         + R+GG+EF       S  E+A +A   R I   +
Sbjct: 282 GHAVGDAVLVVVAERLRSCVRDHDLIFRVGGDEFVILLPAVSAMESAPIAE--RVIARIA 339

Query: 207 Q-INISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           Q  ++     + I +S G A   +  P +  + R AD A+Y AK+ GR  VV
Sbjct: 340 QPFDLGQDTPLSIGVSIGSATFPNDGPTADDLLRSADHAMYEAKRRGRGVVV 391


>gi|237748970|ref|ZP_04579450.1| response regulator receiver:Metal-dependent phosphohydrolase
           [Oxalobacter formigenes OXCC13]
 gi|229380332|gb|EEO30423.1| response regulator receiver:Metal-dependent phosphohydrolase
           [Oxalobacter formigenes OXCC13]
          Length = 713

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 8/179 (4%)

Query: 82  LGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFF--D 135
           +GY+   + + E     N + + + +D L+ L N         SL   N+K    FF  D
Sbjct: 507 VGYLGKLVNIHERKTEANLLRKQANMDSLTELDNRKRIRERLISLFEENKKEEGAFFFID 566

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AI 194
           ID FK INDN GH  GD+++ +++ ++     +   VGR+GG+EF A    SS ++A A 
Sbjct: 567 IDNFKAINDNLGHMFGDEILRYIASEIKRKVRSTDIVGRIGGDEFVAFLRNSSSEKAVAE 626

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            A D+  +  N+   +    ++  ++   +  R   E    + + AD+ALY AK+ G+N
Sbjct: 627 KARDICDLFRNTYKELIDKYNVSCSVGISLFPR-DGETYEELFHNADRALYYAKERGKN 684


>gi|123442044|ref|YP_001006027.1| hypothetical protein YE1746 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089005|emb|CAL11819.1| hypothetical protein YE1746 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 440

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 15/179 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           + EL  S + +  L++ D L+G+ N   F            +    LS++  D D FK  
Sbjct: 258 ITELKQSESILKALAQTDVLTGVANRRHFDDIYQHIWQKTQTEGGTLSVLMIDFDNFKSF 317

Query: 143 NDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH +GD  +  + + L   + G    + R GGEEF       +  +A ++A  +R 
Sbjct: 318 NDLYGHAMGDVCLKSIVETLSKSIRGGSDILARYGGEEFIVLLAPGTLSDATVVAERMRH 377

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-----ADQALYVAKKSGRNRV 255
            IE   I     P   +TIS G+A     EP   ++ +     AD+ALY AK +G+NRV
Sbjct: 378 SIEELDIPHGMSPHGRVTISVGVASVA--EPGEHLVAQDLSAAADKALYRAKTAGKNRV 434


>gi|34497042|ref|NP_901257.1| sensory box/GGDEF family protein [Chromobacterium violaceum ATCC
           12472]
 gi|34330325|gb|AAQ59263.2| probable sensory box/GGDEF family protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 347

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 92/192 (47%), Gaps = 22/192 (11%)

Query: 85  ISGSIL--KELFISYNRISQLSRIDCLSGLLN--HSAF-----ISSLGSYNEKLSIVFFD 135
           ISG  L  ++L  S  ++++++  D L+ L N  H+       IS    Y + ++I  FD
Sbjct: 164 ISGRKLLEQQLHESNQQLAEMAVTDPLTRLYNRRHADMVLRDEISRCERYGQTMAIAVFD 223

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK+ ND +GH  GD V+  +++ L           R+GGEEF      +        
Sbjct: 224 IDHFKRFNDQYGHQAGDDVLVAVANALRDTTRNTDINARIGGEEFMVIFPYTR------- 276

Query: 196 ANDLRKIIENSQINISSGP----SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
             D  K++   Q+ ++          IT S G+ +    +  + ++ RAD+ LY AK++G
Sbjct: 277 LRDAHKVMSRLQMALTHTTFPFVEQRITFSGGVTDWRPGDSPALMMSRADKLLYDAKQAG 336

Query: 252 RNRVVCFSDIEN 263
           RN  V  SD E 
Sbjct: 337 RN--VVLSDQEE 346


>gi|37676011|ref|NP_936407.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37200551|dbj|BAC96377.1| GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 527

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 91/195 (46%), Gaps = 21/195 (10%)

Query: 75  SITISLLLGYISGSILKELFISY-NRISQLSR---IDCLSGLLNHS---AFISSLGSYNE 127
            + + L+L  I    LKE    + N ++QL +    D L+ L N       +  L  ++ 
Sbjct: 336 ELQLKLILSEIENKELKETTQQHKNTVAQLQQDVFTDPLTALHNRRWLDVKLKDLLLHDT 395

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAA 183
             +++  DID+FK IND   H VGDK I  +S +L   F    F G    R GGEEF   
Sbjct: 396 PFALMVIDIDHFKSINDELSHLVGDKAIVNVSSELAAYF---RFRGASCVRFGGEEFLVI 452

Query: 184 ALGSSEQEAAILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
              +   +A + A + R+ I      +I    G    +T+S GI      E      YRA
Sbjct: 453 LENTDLAKAELHAENYRERIFQFGWREILGERG----LTVSIGITMHRDGENTQRTFYRA 508

Query: 241 DQALYVAKKSGRNRV 255
           D+ALY AK +GRN+V
Sbjct: 509 DKALYRAKANGRNQV 523


>gi|13474317|ref|NP_105885.1| hypothetical protein mlr5176 [Mesorhizobium loti MAFF303099]
 gi|14025069|dbj|BAB51671.1| mlr5176 [Mesorhizobium loti MAFF303099]
          Length = 779

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 10/164 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++I  ++R D L+GL N + F        + G  +    +   D+D FK +ND  GHP+G
Sbjct: 328 DKIRFMARYDNLTGLPNRAYFHELVGEAMASGDRDRFCGLAVLDLDDFKSVNDTLGHPIG 387

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D +I  ++++L  V G  + V R GG+EF         ++ + L     +I    Q  + 
Sbjct: 388 DGLIYAVAERLAAVAGQGITVSRFGGDEF--MVFFDRIEDESHLTTQTDEIFAALQGEVD 445

Query: 212 -SGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +G  + I  S G +  R     +  +I +AD ALY AK+ G+N
Sbjct: 446 VAGHGLRIQTSGGAVLARVRDSDVDAMIVKADLALYKAKELGKN 489


>gi|127514718|ref|YP_001095915.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella loihica PV-4]
 gi|126640013|gb|ABO25656.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella loihica PV-4]
          Length = 300

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 20/165 (12%)

Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N        +  +S++  + ++LSIV  D+D+FK+IND  GH +GD V+  ++
Sbjct: 136 DQLTGLYNRHFLAERAAQSLSAMVRHQQELSIVMLDLDHFKKINDFNGHHIGDLVLQAVA 195

Query: 160 DQLVVVFGTPMFVGRLGGEEFA---AAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             L   F     V R+GGEEF       L  + ++      D+R+     Q+   +   +
Sbjct: 196 KLLQDCFRKEDVVARMGGEEFVILMECGLDIAREK----TEDVRQ-----QLARLNPMGL 246

Query: 217 HITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +T S G +        +S ++  AD+A+Y AK  GRN VVC+ D
Sbjct: 247 EVTGSFGVVTANPQNAELSHLLVLADEAVYKAKADGRNCVVCYQD 291


>gi|134296540|ref|YP_001120275.1| diguanylate cyclase/phosphodiesterase [Burkholderia vietnamiensis
           G4]
 gi|134139697|gb|ABO55440.1| diguanylate cyclase/phosphodiesterase [Burkholderia vietnamiensis
           G4]
          Length = 790

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 99/204 (48%), Gaps = 16/204 (7%)

Query: 62  EYILVENLSLVIIS-ITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +Y    N+ L++ S IT+++L   G  +G I K L      ++QL+  D L+GL N  A 
Sbjct: 302 DYYHTRNVYLLMTSFITLAMLAFFGVATGLIGK-LLGREREMTQLAEYDLLTGLANRYAT 360

Query: 119 IS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           +       S+ +   +L ++F D+D FK +ND  GH  GD V+   + +L    G    +
Sbjct: 361 LRGLRNDVSMPASLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLRMTASRLSDAVGDEGSL 420

Query: 173 GRLGGEEFAAAALGSS-EQEAAILAND-LRKIIENSQINISSGPSIHITISAGIA-ERCH 229
            R+GG+EF     G   E+ A  LA   +R   E   +    G S  +  S GIA     
Sbjct: 421 ARIGGDEFVVVMKGDDIERRAVRLAESVIRMFAEPFDVR---GSSFVLHASIGIALHTVA 477

Query: 230 KEPISTIIYRADQALYVAKKSGRN 253
            E    ++ +AD A+Y AK +G+N
Sbjct: 478 NESEIDLLKKADLAMYSAKDAGKN 501


>gi|262379658|ref|ZP_06072814.1| diguanylate cyclase [Acinetobacter radioresistens SH164]
 gi|262299115|gb|EEY87028.1| diguanylate cyclase [Acinetobacter radioresistens SH164]
          Length = 525

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 72/153 (47%), Gaps = 8/153 (5%)

Query: 107 DCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GLLN      F   +       S++  DID+FK+IND +GH  GD+V+  L+  ++
Sbjct: 374 DPLTGLLNRRGMQFFTKGMIDSKVPFSVLLIDIDHFKRINDTYGHDEGDEVLKTLAKIML 433

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
             F       R GGEEF       ++QE    A   R  +E   IN        IT+S G
Sbjct: 434 ENFRKNDLCCRHGGEEFIVIIPNVNKQEVYESAERFRHAVETYIINNVG----RITVSIG 489

Query: 224 IAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
           IA         + ++  AD  LY AK  GRN+V
Sbjct: 490 IASWPESSNSFTEVLKIADNNLYHAKNHGRNQV 522


>gi|170748282|ref|YP_001754542.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170654804|gb|ACB23859.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 457

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 13/165 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q++  D L+GL N     + LG+           L+ +  DID+FK IND+FGH  GD+V
Sbjct: 290 QMAVTDALTGLHNRRYLDNHLGTLFGDEAARRANLAALILDIDHFKGINDSFGHEAGDEV 349

Query: 155 IAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-S 212
           +   +++ V     P+  V R GGEE       +   EA  +A  +R+ +E     +  +
Sbjct: 350 LRGFAER-VRQHTRPIDIVARYGGEEVVVILPEAGLVEAQGIAERIRERVEAVPFTVQRA 408

Query: 213 GPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
             ++ +T+S G+A R   +  P + ++ RAD ALY AK +GRNRV
Sbjct: 409 SRTVSVTVSIGVAVRRGDDLGP-ADMLRRADLALYRAKAAGRNRV 452


>gi|169826402|ref|YP_001696560.1| putative signaling membrane protein [Lysinibacillus sphaericus
           C3-41]
 gi|168990890|gb|ACA38430.1| putative signaling membrane protein [Lysinibacillus sphaericus
           C3-41]
          Length = 309

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 90/192 (46%), Gaps = 19/192 (9%)

Query: 84  YISGSILKE-----LFISYNRISQLSR---IDCLSGLLNHSAFISSLGSY---NEKLSIV 132
           Y    ILK      +  + ++I+ L+    +D L+G+ N      +L          +++
Sbjct: 117 YYEAKILKRSVQNMMICAESKITDLTEQLNVDSLTGIPNRRIMDQTLHELIINKVPHAVI 176

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D FK IND +GH VGD+V+   +  + +  G      R GGEEF       S  EA
Sbjct: 177 LIDLDDFKSINDTYGHTVGDEVLKAFAHHMQLNMGEQGMCFRYGGEEFMIILPSRSIDEA 236

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSG 251
             LA  LR + +  Q      P   +T+SAGI A   + +  + +I  AD ALY AK+SG
Sbjct: 237 VELAESLR-VKQALQETACGRP---VTMSAGITAFTPNVQSPNQLIEIADHALYKAKQSG 292

Query: 252 RNRVVCFSDIEN 263
           RN   C   + N
Sbjct: 293 RN---CLCVVRN 301


>gi|149194487|ref|ZP_01871583.1| hypothetical protein CMTB2_00549 [Caminibacter mediatlanticus TB-2]
 gi|149135231|gb|EDM23711.1| hypothetical protein CMTB2_00549 [Caminibacter mediatlanticus TB-2]
          Length = 241

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 84/164 (51%), Gaps = 11/164 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I +LS+ D  + +     FI  +  Y       N  LS +  DID F++IN  +GH  G
Sbjct: 72  QIDKLSKFDETTNVYKRLYFIEIVEKYINAAKRKNLPLSAMIIDIDNFQEINRQYGHNFG 131

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DK++  +++++         +GR GG+EF   +  + E E   LA  + K + + +I+  
Sbjct: 132 DKILKVIAEKIKENLRKSDVLGRFGGDEFIIVSFATKE-ELYNLAKRISKSVSSLKID-- 188

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               I+I +S GIA+    E +  +I + ++A  +AK+ G NRV
Sbjct: 189 -EYEINIMLSIGIAQLSIYEDLQKLIKKTEEAKLLAKQKGGNRV 231


>gi|108798716|ref|YP_638913.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Mycobacterium sp. MCS]
 gi|119867834|ref|YP_937786.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. KMS]
 gi|126434319|ref|YP_001070010.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. JLS]
 gi|108769135|gb|ABG07857.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Mycobacterium sp. MCS]
 gi|119693923|gb|ABL90996.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. KMS]
 gi|126234119|gb|ABN97519.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. JLS]
          Length = 601

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 89/172 (51%), Gaps = 10/172 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +  R+  L+  D L+GL N  A +  L           ++++FFD+D  K +ND  GH  
Sbjct: 163 AEERLRYLADHDDLTGLHNRRALLRHLDDRLAAGRPGPVAVLFFDLDRLKAVNDYLGHIA 222

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEF-AAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD  I  L+++L        F+ RLGG+EF    A  ++  +A  LA+ L+ ++   +++
Sbjct: 223 GDWFIRVLAERL-QQGDEKKFIARLGGDEFVVVPAAPTTADDAETLAHRLQAVL-RERVS 280

Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           I  G  +  TIS G+A     ++  S ++ RADQA+  AK  G N +  FS+
Sbjct: 281 I-DGELLTRTISIGVAVGTPGRDTTSDLLSRADQAVLSAKGEGGNSISVFSE 331


>gi|27367884|ref|NP_763411.1| GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|27359457|gb|AAO08401.1|AE016813_153 GGDEF family protein [Vibrio vulnificus CMCP6]
          Length = 527

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 91/195 (46%), Gaps = 21/195 (10%)

Query: 75  SITISLLLGYISGSILKELFISY-NRISQLSR---IDCLSGLLNHS---AFISSLGSYNE 127
            + + L+L  I    LKE    + N ++QL +    D L+ L N       +  L  ++ 
Sbjct: 336 ELQLKLILSEIENKELKETTQQHKNTVAQLQQDVFTDPLTALHNRRWLDVKLKDLLLHDT 395

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAA 183
             +++  DID+FK IND   H VGDK I  +S +L   F    F G    R GGEEF   
Sbjct: 396 TFALMVIDIDHFKSINDELSHLVGDKAIVNVSSELAAYF---RFRGASCVRFGGEEFLVI 452

Query: 184 ALGSSEQEAAILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
              +   +A + A + R+ I      +I    G    +T+S GI      E      YRA
Sbjct: 453 LENTDLAKAELHAENYRERIFQFGWREILGERG----LTVSIGITMHRDGENTQRTFYRA 508

Query: 241 DQALYVAKKSGRNRV 255
           D+ALY AK +GRN+V
Sbjct: 509 DKALYRAKANGRNQV 523


>gi|55980767|ref|YP_144064.1| GGDEF domain-containing protein [Thermus thermophilus HB8]
 gi|55772180|dbj|BAD70621.1| GGDEF domain protein [Thermus thermophilus HB8]
          Length = 316

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 19/155 (12%)

Query: 109 LSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GL N  A   +L     ++       ++V  D+D FK++ND  GH  GD+ +  ++  
Sbjct: 166 LTGLPNRRALEMALEREAARVERGGPPFALVLLDLDGFKRVNDEGGHREGDRYLRRVARA 225

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           LV        V R GG+EFA    G+ E+EA  +A  L + ++   ++ S G    + + 
Sbjct: 226 LVSGVRRGDLVARWGGDEFAVLLPGTGEKEAVEVAERLGRRLQEEGVSASLG----VAVY 281

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           AG  E         +  RADQALY AK  G+ RVV
Sbjct: 282 AGDLE--------DLFLRADQALYRAKALGKGRVV 308


>gi|89092207|ref|ZP_01165161.1| probable two-component response regulator [Oceanospirillum sp.
           MED92]
 gi|89083295|gb|EAR62513.1| probable two-component response regulator [Oceanospirillum sp.
           MED92]
          Length = 505

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 11/180 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            IL +L  S +++++ +R+D L+ + N   F  ++             L+++  DID+FK
Sbjct: 320 QILMQLKQSQDQLARSARVDGLTQVNNRREFERNIEMEWRRAQRSKRSLALIMLDIDHFK 379

Query: 141 QINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GH  GD  +  ++  +   +      V R GGEEF      +    A ++A  +
Sbjct: 380 PFNDGYGHLAGDGCLRTVAQTIKHSIQRAQDMVCRYGGEEFVVILPETDLDGAQMIAERI 439

Query: 200 RKIIENSQINIS-SGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           RK I   +IN   S     ITISAG+A      +     +I  ADQ LY AK  GRN+V 
Sbjct: 440 RKAIAKLKINHEFSSTDNTITISAGVACLSPSQEGSPHELILLADQGLYQAKAQGRNQVA 499


>gi|148262813|ref|YP_001229519.1| diguanylate cyclase [Geobacter uraniireducens Rf4]
 gi|146396313|gb|ABQ24946.1| diguanylate cyclase [Geobacter uraniireducens Rf4]
          Length = 412

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 21/169 (12%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+GL +  A    +     +  I   D+D+FK  ND++GH VGD+V+  ++ ++  V 
Sbjct: 243 DDLTGLPSRRALNEQMLGVGRQYVIAMLDVDHFKSFNDSYGHDVGDQVLKMVAKKMAAVK 302

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG------------- 213
           G      R GGEEF          EA     ++RK I   Q+ +                
Sbjct: 303 GGGK-AYRYGGEEFTILMPRKKMAEAIPFLEEVRKNIATYQLVLRGNDRPKEAKEGKKLR 361

Query: 214 ------PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
                  S+ +TIS G+AE          ++  AD+ALY AK  GRN++
Sbjct: 362 ASERGDKSVSVTISIGVAESSDSLRSAEEVLKAADKALYRAKSKGRNQL 410


>gi|326423928|ref|NP_760916.2| GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|319999306|gb|AAO10443.2| GGDEF family protein [Vibrio vulnificus CMCP6]
          Length = 350

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 82/169 (48%), Gaps = 8/169 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           ++LKE   S  ++ Q+S  D L+ L N       L + N+   IV  DID FK+IND +G
Sbjct: 182 ALLKE---SNAKLQQISVTDALTQLPNRLYIEEFLINSNQVHWIVILDIDDFKKINDRYG 238

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGDKV+  ++ ++    G      R GGEEF  A      QE  ++   + + ++   
Sbjct: 239 HDVGDKVLQIVAQKIESCVGGNGVACRWGGEEFLMAFY---LQEIDVIEGKIFR-LQQEI 294

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                G    IT S G A    K        +AD+ALY AKK+G+N  V
Sbjct: 295 ATFEFGLRSPITFSCGGAPHQPKH-YRKAFRQADEALYRAKKAGKNSFV 342


>gi|319778115|ref|YP_004134545.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171834|gb|ADV15371.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 878

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 83/173 (47%), Gaps = 8/173 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQ 141
           +S S   EL ++   +  ++  D L+GL N       ++       + +++  D+D FKQ
Sbjct: 440 LSESKNAELKVAKAHVEHVALHDPLTGLPNRRYLDELLAEKSVTGTRTALLHLDLDRFKQ 499

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH  GD ++   S  + V  G   FV R+GG+EF   + G  +++ + L +  R 
Sbjct: 500 INDTLGHAAGDAMLVHASKVIKVNTGPGDFVARIGGDEFVVVSHGRDDKQLSALGD--RI 557

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           I +  +     G      +S GIA     +    ++  AD ALY AK SGRNR
Sbjct: 558 ITQMRRPVDFQGNPCRFGVSIGIAAGTDAK---QLLVNADLALYRAKGSGRNR 607


>gi|311697042|gb|ADP99915.1| GGDEF domain-like protein [marine bacterium HP15]
          Length = 397

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 78/163 (47%), Gaps = 11/163 (6%)

Query: 100 ISQLSRIDCLSGLLNH---SAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +++  D L+G+ N    S F+         Y E+ S++  DID FK IND  GH  GD
Sbjct: 231 LKEVASKDYLTGVFNRRYLSEFLRDQSERFDRYQERSSVILIDIDNFKAINDEHGHDFGD 290

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQINIS 211
            V+   SD +          GR+GGEEF      +  Q A  +    LRK    S++   
Sbjct: 291 LVLRQFSDLVSKNVRKVDTFGRMGGEEFLIILPNTGVQSALEVGKKILRKT--RSKLQTI 348

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
            G  + +T SAGI+E    +   + ++  ADQ LY AK  GRN
Sbjct: 349 DGIDVALTFSAGISEFSAVQSSANKVLKHADQLLYEAKSEGRN 391


>gi|308186974|ref|YP_003931105.1| Cellulose synthesis regulatory protein [Pantoea vagans C9-1]
 gi|308057484|gb|ADO09656.1| Cellulose synthesis regulatory protein [Pantoea vagans C9-1]
          Length = 528

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 89/190 (46%), Gaps = 23/190 (12%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
            I  EL    + +  L+ ID L+GL N   F + L           E ++++ FDID+FK
Sbjct: 344 QIRDELTTINHTLQSLALIDGLTGLANRRQFDAMLDQVLKRSQKSGEPVALIMFDIDFFK 403

Query: 141 QINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFA------AAALGSSEQEAA 193
           + ND +GH  GD  +  +S  L  +       V R GGEEFA        ++G    E A
Sbjct: 404 RYNDTYGHVAGDTCLQRVSTILKEITQRQDAVVARYGGEEFAIILPSGGESMGKKVAERA 463

Query: 194 ILANDLRKIIENSQINISSG-PSIHITISAG---IAERCHKEPISTIIYRADQALYVAKK 249
           + A     ++     + +SG P   +T+SAG   +      +    +  +AD+ALY AK 
Sbjct: 464 VNA-----VMSAGIPHETSGIPEGIVTLSAGYSSLISNGQPDEAKRLKEQADKALYEAKH 518

Query: 250 SGRNRVVCFS 259
           +GRNRV   S
Sbjct: 519 NGRNRVHGLS 528


>gi|302343784|ref|YP_003808313.1| diguanylate cyclase [Desulfarculus baarsii DSM 2075]
 gi|301640397|gb|ADK85719.1| diguanylate cyclase [Desulfarculus baarsii DSM 2075]
          Length = 355

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 87/179 (48%), Gaps = 16/179 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           L++   S +R+  ++  D L+ L N  A+ S L         +    S++  DID FK I
Sbjct: 169 LEKAVQSLDRLETMALTDELTKLANRRAWDSRLRVEFNRFLRFGRPCSVIMLDIDDFKAI 228

Query: 143 NDNFGHPVGDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           ND FGH VGD+    +A L  Q +       F+ R GGEEF      +S   A +LA  L
Sbjct: 229 NDRFGHLVGDQALIQVARLCQQGLRAVD---FLARFGGEEFVCLLPETSLDGAYVLAERL 285

Query: 200 RKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R  +  +    ++G    +T S G++  R   E    ++ RAD+ +Y AK  G+N +VC
Sbjct: 286 RASLA-AWAFTAAGQRARLTASFGVSCFRPDDERPEQVVERADKNMYRAKALGKN-LVC 342


>gi|288917008|ref|ZP_06411379.1| diguanylate cyclase [Frankia sp. EUN1f]
 gi|288351548|gb|EFC85754.1| diguanylate cyclase [Frankia sp. EUN1f]
          Length = 526

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 21/172 (12%)

Query: 107 DCLSGLLNHSAFISSL---------------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           D L+GL N   F   L                + +E +S++F D+D+FK +ND FGH  G
Sbjct: 345 DPLTGLANRELFARRLRQAVGPSPEPDNDDAPTGHETVSVLFIDLDHFKAVNDAFGHAAG 404

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++   +D+L     +   V R GG+EFA   +GS    A  +A  L   ++ +  +++
Sbjct: 405 DELLKISADRLQNAARSTDTVARFGGDEFAVILIGSDPDTAVPIAQRLATAVQ-TPCHLA 463

Query: 212 SGPSIHITISAGIAERCH-KEPI--STIIYRADQALYVAKKSGRNRVVCFSD 260
             P      S G+A   H  EP    T+++ AD A+Y AK+  R R +   D
Sbjct: 464 DHP-YRPRASLGLATLDHTTEPACPDTLLHHADLAMYAAKRR-RTRGLVVYD 513


>gi|260544763|ref|ZP_05820584.1| LOW QUALITY PROTEIN: GGDEF domain-containing regulatory protein
           [Brucella abortus NCTC 8038]
 gi|260756620|ref|ZP_05868968.1| LOW QUALITY PROTEIN: GGDEF domain-containing regulatory protein
           [Brucella abortus bv. 6 str. 870]
 gi|260760050|ref|ZP_05872398.1| LOW QUALITY PROTEIN: GGDEF domain-containing regulatory protein
           [Brucella abortus bv. 4 str. 292]
 gi|260763289|ref|ZP_05875621.1| LOW QUALITY PROTEIN: GGDEF domain-containing regulatory protein
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882437|ref|ZP_05894051.1| LOW QUALITY PROTEIN: GGDEF domain-containing regulatory protein
           [Brucella abortus bv. 9 str. C68]
 gi|260098034|gb|EEW81908.1| LOW QUALITY PROTEIN: GGDEF domain-containing regulatory protein
           [Brucella abortus NCTC 8038]
 gi|260670368|gb|EEX57308.1| LOW QUALITY PROTEIN: GGDEF domain-containing regulatory protein
           [Brucella abortus bv. 4 str. 292]
 gi|260673710|gb|EEX60531.1| LOW QUALITY PROTEIN: GGDEF domain-containing regulatory protein
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676728|gb|EEX63549.1| LOW QUALITY PROTEIN: GGDEF domain-containing regulatory protein
           [Brucella abortus bv. 6 str. 870]
 gi|260871965|gb|EEX79034.1| LOW QUALITY PROTEIN: GGDEF domain-containing regulatory protein
           [Brucella abortus bv. 9 str. C68]
          Length = 198

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 10/125 (8%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISY-------NRISQLSRIDCLSGLLNHSAFIS 120
           +L  V ++++    +G    S L+EL  SY       N +++++ +D L+GLLN  +FI 
Sbjct: 4   DLGQVAVAVSDCNAVGGFLVSRLEELERSYRTAVKRANELARVASVDPLTGLLNRRSFIQ 63

Query: 121 SLGSYNEKLSIVFF---DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
              + N+     +F   D+DY KQIND +GHP GD  I  ++  L     +   + R+GG
Sbjct: 64  QFNAANKAGVRGWFLIVDVDYLKQINDQYGHPAGDDAIIAVAQALEDCLSSDSLIARIGG 123

Query: 178 EEFAA 182
           +EF A
Sbjct: 124 DEFCA 128


>gi|239908619|ref|YP_002955361.1| putative response regulator [Desulfovibrio magneticus RS-1]
 gi|239798486|dbj|BAH77475.1| putative response regulator [Desulfovibrio magneticus RS-1]
          Length = 321

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 85/177 (48%), Gaps = 13/177 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISS-----LGSYNE--KLSIVFFDIDYFKQIN 143
           +EL     +  QLS  D L+G+ N   F  +     L S  +   LS +  DID FK  N
Sbjct: 140 RELEALTRKFEQLSNQDGLTGVPNRRCFEDAFRKEWLRSRRDGTPLSALMIDIDCFKLYN 199

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD  +  +++ +V     P  F  R GGEEF     G+    A  +A  +R  
Sbjct: 200 DTYGHLQGDLCLRRVAEAIVEALKRPGDFAARYGGEEFVTLLPGTDLAGALSIAGIIRGN 259

Query: 203 IENSQINISSGPSIHI-TIS---AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  + I  +S P   I T+S   +G+      EP  T++  +D ALY AK +GRNRV
Sbjct: 260 VRAANIEHASSPVADIVTVSIGISGVVPNMDLEP-ETLLAASDAALYQAKSAGRNRV 315


>gi|91792170|ref|YP_561821.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91714172|gb|ABE54098.1| GGDEF domain [Shewanella denitrificans OS217]
          Length = 585

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 95/202 (47%), Gaps = 19/202 (9%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS---SLGS 124
           N   +++ + I+L LG       K    +  R+ QL+  D L+GL +   F     S   
Sbjct: 384 NRLFIVVLLCIALGLGTWGWHSWK----NQQRLRQLAEYDGLTGLFSRGHFTQVALSAVD 439

Query: 125 YNEKL----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           Y + L    S +  DID FK IND FGH  GD  +  ++     +      +GR+GGEE 
Sbjct: 440 YAKALKAPISCILLDIDKFKCINDTFGHATGDWALRAVAQMCRELCREHEIIGRIGGEEI 499

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHK---EPISTI 236
                   +  A+ LA  LR+ +  +Q++ S SG    ++ S G++  C       +  +
Sbjct: 500 CFLLPECHQDNASQLAQSLRQGL--TQLDTSASGHKFDLSGSFGVS--CSTISGYKLDKL 555

Query: 237 IYRADQALYVAKKSGRNRVVCF 258
           +  AD A+Y +K +GRNRV  +
Sbjct: 556 MQHADNAMYQSKHAGRNRVQVY 577


>gi|117926670|ref|YP_867287.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Magnetococcus sp. MC-1]
 gi|117610426|gb|ABK45881.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Magnetococcus sp. MC-1]
          Length = 834

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 10/176 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S +  L  +  R+ QL+  DCL+ L N + F S L            K+ ++F D+D+FK
Sbjct: 368 SDISRLKATEERLEQLAFFDCLTKLPNRAHFQSRLDHALTAANRRQNKVGLIFIDLDHFK 427

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND+ GH  GD+++   + ++         V R+GG+EF    L      A ++ N   
Sbjct: 428 HINDSMGHNAGDQLLIEAAKRIQSCVREEDTVARMGGDEF-TIILADLTDTAKVMTNVAL 486

Query: 201 KIIEN-SQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
            I+E+ +   +     + I  S G+A         + +I  AD A+Y AK+SGRNR
Sbjct: 487 TILESFTHPIVLEDKKLFIGCSLGMAIYPDDSGNAALLIKHADTAMYRAKESGRNR 542


>gi|330957433|gb|EGH57693.1| PAS:GGDEF protein [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 757

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 80/146 (54%), Gaps = 14/146 (9%)

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           +L    E+ +++F D+D FK +ND+ GH  GD+++  ++++L +   +   + R+GG+EF
Sbjct: 350 TLDPRYERATVLFLDLDGFKVVNDSMGHLAGDQLLKGVANRLQMCVRSNDVLARIGGDEF 409

Query: 181 AAAALGSSEQEAAILANDLRKIIEN--SQINIS---SGPSIHITISAGI--AERCHKEPI 233
           A   +G  + + A+      K+ E   SQ++ +    G  I I+ S GI  A   H +P 
Sbjct: 410 AILLMGKDQPDTAV------KMAERIVSQLHTALQIEGQDIFISCSIGIVTAGESHTKP- 462

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
             ++  AD A+Y AKK GR R   F+
Sbjct: 463 EELLRDADVAMYSAKKQGRGRWSIFN 488


>gi|323494243|ref|ZP_08099355.1| hypothetical protein VIBR0546_06797 [Vibrio brasiliensis LMG 20546]
 gi|323311406|gb|EGA64558.1| hypothetical protein VIBR0546_06797 [Vibrio brasiliensis LMG 20546]
          Length = 634

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 15/205 (7%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH---SAFISS 121
           L E  S  I+ +T+  +L Y S   +  L  +   +   +  D L+G  N      +  +
Sbjct: 429 LKEQRSREILYVTLFGILAYFSLRGILRLRRANAELKNQNSTDSLTGAFNRRFLEGWRQT 488

Query: 122 LGSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RL 175
           L +  +  K  I   DID+FKQ ND FGH  GD V+     + V V  T +  G    R 
Sbjct: 489 LSTEQDDYKYLISVIDIDHFKQFNDQFGHEAGDLVLT----ETVRVLQTNLRKGDLLVRW 544

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCH-KEPI 233
           GGEEF      ++E++       LR  IE   ++       I I++ A +++    K   
Sbjct: 545 GGEEFILIMPLTNEEKVTDTLERLRASIEQHTVHYQQNQFKITISLGATVSDSAQLKSQW 604

Query: 234 STIIYRADQALYVAKKSGRNRVVCF 258
            T+  +AD  LY AK+SGRN+   +
Sbjct: 605 ETVFAQADTQLYQAKRSGRNQYSVY 629


>gi|313649476|gb|EFS13907.1| gmr domain protein [Shigella flexneri 2a str. 2457T]
          Length = 284

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 59  SGTDITEERRTQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 118

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN--- 197
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 119 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRIL 178

Query: 198 -DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR       I + +  S+ I++S       H    +TII  AD A+Y AK+ GR +  
Sbjct: 179 TRLRLPFRIGLIEVYTSCSVGISLSPE-----HGSDSATIIRHADTAMYTAKEGGRGQFC 233

Query: 257 CFS 259
            F+
Sbjct: 234 VFT 236


>gi|229588499|ref|YP_002870618.1| hypothetical protein PFLU0956 [Pseudomonas fluorescens SBW25]
 gi|229360365|emb|CAY47222.1| putaive GGDEF domain membrane protein [Pseudomonas fluorescens
           SBW25]
          Length = 497

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 87/173 (50%), Gaps = 14/173 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S+L+  D L+GL N       L           + L+++  D+D+FK  ND  GH  GD
Sbjct: 328 LSELAATDALTGLANRRVLDERLRLEWDRAQRSTDPLTVLMIDVDHFKAFNDRHGHQGGD 387

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINI 210
           + +  ++  +      P     R GGEEFA     +  + A ++A  +R  +E+  ++  
Sbjct: 388 EALRTVAQVIGANIRRPADLAARYGGEEFAVVLPLTDTRGAWVIAEHIRSAVEHLPRVTG 447

Query: 211 SSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           S  P   IT+S G++  ++  +  +  ++  AD+ALY AK +GRNR+V  S +
Sbjct: 448 SERP---ITVSIGMSTWDKRSRLSLEALLLSADRALYEAKHTGRNRIVDASTL 497


>gi|227822860|ref|YP_002826832.1| GGDEF family protein [Sinorhizobium fredii NGR234]
 gi|227341861|gb|ACP26079.1| GGDEF family protein [Sinorhizobium fredii NGR234]
          Length = 788

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 19/166 (11%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN   F ++L            +L+ +F D+D FK INDNFGH  GD V+    
Sbjct: 352 DHLTGLLNRQGFENALDEAILSADQCGMQLACLFIDLDRFKWINDNFGHAAGDAVLRQTV 411

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII-----ENSQINISSGP 214
           +++         + RLGG+EFA     +   + A+LA+++ + I     E   I   +G 
Sbjct: 412 ERIRAALRPEDVIARLGGDEFAILIAAT---DVAVLASEIGESICAALHEPMPI---TGN 465

Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + ++ S G++    H    S ++ +AD A+Y  K+ G+N +  F 
Sbjct: 466 ELFVSASVGVSVYPAHASGASDLLLKADMAMYARKRDGKNGLQVFD 511


>gi|238794532|ref|ZP_04638140.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia intermedia ATCC 29909]
 gi|238726112|gb|EEQ17658.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia intermedia ATCC 29909]
          Length = 664

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + +   +  R+  L+  D ++GL N  A    + S         + I++ D+D FK
Sbjct: 218 SGTDITKERRAQERLRILANTDMITGLPNRHAIHERINSAILTRGETSVGIIYLDLDNFK 277

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILA 196
           ++ND++GH  GD+++  +S  ++   G    + RLGG+EF      A++   E  A  + 
Sbjct: 278 KVNDHYGHMFGDRLLKDVSLAILSCLGESEMLARLGGDEFIVLVENASMNLLEATAQRIL 337

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           N ++       I + +G SI I +        H + +  II  AD A+Y AK+ G+    
Sbjct: 338 NRMKLPFRVGLIEVYTGCSIGIALCPE-----HGDTLENIIRSADTAMYTAKEHGKQTYS 392

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 393 IFSQKMNK 400


>gi|114332092|ref|YP_748314.1| diguanylate cyclase [Nitrosomonas eutropha C91]
 gi|114309106|gb|ABI60349.1| diguanylate cyclase [Nitrosomonas eutropha C91]
          Length = 269

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 7/177 (3%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEK-LSIVFFDIDYFKQI 142
           ++ L +   ++ +L   D ++G  N     +      +    NE  L  V  D+D FK I
Sbjct: 93  IESLKLELEQLRELIHYDPMTGTFNRRGLDAVYLREAARADRNENTLCAVMIDLDNFKCI 152

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD V+  L             V R GGEEF      ++ + A  +   L+  
Sbjct: 153 NDAYGHQFGDDVLIHLVKLAKKSLRPSDVVARYGGEEFVILLPDTTLESAVWVMQRLQNS 212

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                +    G S+ I  S GIA R  +E   +++ RAD+AL  AKKSG+NR++  S
Sbjct: 213 FSKKTLPDMDGSSVPIAFSGGIAFRQLRESQKSLLKRADEALCQAKKSGKNRIMIAS 269


>gi|327191913|gb|EGE58899.1| putative two-component response regulator protein [Rhizobium etli
           CNPAF512]
          Length = 430

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 96/180 (53%), Gaps = 15/180 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDN 145
           EL  +  R+ +L+R D L+G+ N    + +L      G     ++++  DID+FK +ND 
Sbjct: 239 ELADANARLERLARTDPLTGIANRRWMMETLESLWRHGRETGIVAMLMCDIDHFKALNDK 298

Query: 146 FGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            GH  GD+ +  ++  +   V      V R GGEEF        E+EA  +A  +R+ +E
Sbjct: 299 LGHGEGDRCLVKVAGIIQSCVRADRDLVSRHGGEEFLIVLPDVEEEEAVAVAKRIRESVE 358

Query: 205 NSQI-NISS--GPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCF 258
            + + N SS  GPS  +T+S G+A +   +    ++ + + AD ALY AK++GRN+V  F
Sbjct: 359 AAALPNPSSSVGPS--VTLSVGVAFKSAADTGVTLANLQHEADVALYRAKEAGRNQVCVF 416


>gi|320158154|ref|YP_004190532.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
 gi|319933466|gb|ADV88329.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
          Length = 527

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 91/195 (46%), Gaps = 21/195 (10%)

Query: 75  SITISLLLGYISGSILKELFISY-NRISQLSR---IDCLSGLLNHS---AFISSLGSYNE 127
            + + L+L  I    LKE    + N ++QL +    D L+ L N       +  L  ++ 
Sbjct: 336 ELQLKLILSEIENKELKETTQQHKNTVAQLQQDVFTDPLTALHNRRWLDVKLKDLLLHDT 395

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAA 183
             +++  DID+FK IND   H VGDK I  +S +L   F    F G    R GGEEF   
Sbjct: 396 TFALMVIDIDHFKSINDELSHLVGDKAIVNVSSELAAYF---RFRGASCVRFGGEEFLVI 452

Query: 184 ALGSSEQEAAILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
              +   +A + A + R+ I      +I    G    +T+S GI      E      YRA
Sbjct: 453 LENTDLAKAELHAENYRERIFQFGWREILGERG----LTVSIGITMHRDGENTQRTFYRA 508

Query: 241 DQALYVAKKSGRNRV 255
           D+ALY AK +GRN+V
Sbjct: 509 DKALYRAKANGRNQV 523


>gi|225850049|ref|YP_002730283.1| response regulator PleD [Persephonella marina EX-H1]
 gi|225644981|gb|ACO03167.1| response regulator PleD [Persephonella marina EX-H1]
          Length = 300

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 103/197 (52%), Gaps = 28/197 (14%)

Query: 79  SLLLGYISGS-ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---SIVFF 134
           S L+G I+ + ILK       +++ +  +D L+GL N + +      Y  KL   S++  
Sbjct: 108 SRLVGIITATDILK-------KVAGIGLMDPLTGLNNRNYYELLKQKYYCKLLSISVIMA 160

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQ 190
           D+D FK+IND +GH VGD+V+     ++  +F T + +     R GGEEF      ++ +
Sbjct: 161 DLDDFKKINDRYGHLVGDEVLK----KVGSIFKTNLRIYDEIIRWGGEEFLILLPRTNIK 216

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYV 246
            A ++A  L++ I  S I       + I+IS GI+   H E     + T +  AD+AL  
Sbjct: 217 RAVMIAGRLKEKI--SAIRFKDYLDLKISISMGIS---HYEGEGRFLDTAVREADKALLT 271

Query: 247 AKKSGRNRVVCFSDIEN 263
           AKK G+NR+V   +I N
Sbjct: 272 AKKEGKNRIVTGKNILN 288


>gi|163792654|ref|ZP_02186631.1| hypothetical protein BAL199_17443 [alpha proteobacterium BAL199]
 gi|159182359|gb|EDP66868.1| hypothetical protein BAL199_17443 [alpha proteobacterium BAL199]
          Length = 428

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 15/163 (9%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +Y+R     R+D        +A + +       +S++  D+D FK IND FGH  GD V+
Sbjct: 265 AYDR----GRLDA-----GGAAIVDTALQAGRPISMIIIDLDGFKIINDRFGHTKGDDVL 315

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  +         + R GG+EF   + G +   A +L   LR+ +E        GP 
Sbjct: 316 RTIAQTIAESLRKQDHLFRYGGDEFVILSDGLAHGSAFVLGERLRRAVELVTAKEPGGP- 374

Query: 216 IHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256
             IT+S G+A  C  + ++   +    D+ LY+AK +GRNRV+
Sbjct: 375 --ITVSVGVAT-CPLDALTVDRLFTVTDERLYIAKHAGRNRVI 414


>gi|46202728|ref|ZP_00052706.2| COG0840: Methyl-accepting chemotaxis protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 567

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 93/200 (46%), Gaps = 14/200 (7%)

Query: 67  ENLSLVIISITISLLLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-- 123
           E LS+  I        GY++  S + E   S  R+   +  D L+GL N   F ++L   
Sbjct: 359 EWLSITAIRDRGGETHGYVATFSNIAERKRSETRMRWQAEHDALTGLANRPYFETALAVA 418

Query: 124 -----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                  ++ L ++F D+D FK+IND+ GH  GD V+A ++ +L  V  +   V R+GG+
Sbjct: 419 LSQARENDDDLGLLFIDLDGFKEINDSLGHAAGDSVLAAVAKRLQQVVRSDDLVARMGGD 478

Query: 179 EFAAAALG-SSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIA-ERCHKEPIST 235
           EFA        E +A  +A    KI+   S+     G    I  S GIA    H      
Sbjct: 479 EFAVVIPKLHREADAQHIAE---KIVSRLSEPFAVGGVQARIGASIGIALYPHHGTSPEQ 535

Query: 236 IIYRADQALYVAKKSGRNRV 255
           +   AD A+Y  K+ GRN V
Sbjct: 536 LTSAADGAMYRRKQKGRNGV 555


>gi|330955459|gb|EGH55719.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 131

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 69/136 (50%), Gaps = 11/136 (8%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAAALG 186
           +I+  DID+FK  NDN+GHP GD  +  L     Q     G   F  R GGEE     +G
Sbjct: 1   AIILLDIDHFKSYNDNYGHPQGDTCLRLLCQKIQQSAHEHGAVAF--RFGGEEVLVLMIG 58

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQA 243
            + Q   + A     + E    +   G +  +TIS G+A  C   P+++   +I  AD A
Sbjct: 59  DAVQAREVAAALQSAVAELKLPHPVLGENALVTISLGVA--CATAPLTSAENLIGAADNA 116

Query: 244 LYVAKKSGRNRVVCFS 259
           LY AK++GRN  VCF+
Sbjct: 117 LYAAKRAGRN-CVCFA 131


>gi|330949941|gb|EGH50201.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 615

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 121/275 (44%), Gaps = 53/275 (19%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY----- 84
           Y  +F  +F   V  +    L  + L     L  ++ E + L + S   S  LG      
Sbjct: 185 YHGMFHQMFRYAVSLLLGAGLLTMHLMGMKALRLVIPEGIELHVPSTENSQQLGLTIAAI 244

Query: 85  ----ISGSI----------------------LKELFISYNRISQLSRIDCLSGLLNHSAF 118
               I+GSI                      L +L  +   + Q++  D L+ L+N   F
Sbjct: 245 PLLTIAGSISAAMADKKLQGKEHDLQRVNALLTQLDQARVSLQQVAHYDPLTNLINRRGF 304

Query: 119 ISSLG------SYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                      ++N+  L+++F DID+FK+IND+ GH  GD+++  +++++     T   
Sbjct: 305 NQIFAEKLQEHTFNKGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRTQDV 364

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIA----- 225
           V R GG+EF         +EA  LA+   ++++  +  I+ +G  + +T S GIA     
Sbjct: 365 VARFGGDEFCILLSIPDYEEARHLAH---RVMQKMKETIALAGRRMVMTTSIGIAVFPRD 421

Query: 226 -ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            E C +     ++  AD ALY +K  GRN V  F+
Sbjct: 422 GETCDE-----LLKHADLALYQSKDKGRNGVNFFN 451


>gi|300713192|ref|YP_003739231.1| Response regulator [Erwinia billingiae Eb661]
 gi|299060263|emb|CAX53513.1| Response regulator [Erwinia billingiae Eb661]
          Length = 297

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 8/162 (4%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +Y     LS  D L+GL N     + L    N + ++   D+D+FK+IND +GH VGDKV
Sbjct: 138 NYQGAVSLSLTDELTGLPNRRHLNNKLREMENRQGTVCIADVDHFKKINDTYGHEVGDKV 197

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +  +L       +FV R GGEEF      +      + A +  + +++S   + +G 
Sbjct: 198 LRNIGLKLSSFSQDDVFVSRSGGEEFVILIFDN------VNAGNFIRNMKSSISEVCNG- 250

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S+ IT+S G+A +  ++  S+ I  AD ALY AK++GR+ ++
Sbjct: 251 SVGITLSIGVAIKGSEQSSSSAISAADHALYGAKETGRDSIM 292


>gi|302878764|ref|YP_003847328.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Gallionella capsiferriformans ES-2]
 gi|302581553|gb|ADL55564.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Gallionella capsiferriformans ES-2]
          Length = 852

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 97/197 (49%), Gaps = 25/197 (12%)

Query: 85  ISGSILKELFISYNRISQLSRI----------DCLSGLLNHSAF-------ISSLGSYNE 127
           IS S+ +     ++R SQL +           D L+GL N   F       + S      
Sbjct: 378 ISASVNQLALAVHDRESQLQQARKEQEYLSDHDALTGLPNRRHFSKRLEHALDSTRENRA 437

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAAL 185
           + +++F D+D FK +ND  GH +GD+++  ++++LV   G+   + R+GG+EF      +
Sbjct: 438 QFAVMFLDLDQFKLVNDTLGHHIGDELLVQVANRLVQQPGSGQTLARIGGDEFNILIEGV 497

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQA 243
           G  +Q   I+   L +  E     + +G  I I+ S G+A   R  ++ +S +I  AD A
Sbjct: 498 GDIQQLKEIVGQYLAQFHEPF---LCAGLEIDISASIGVATFPRDGEDSVS-LIKHADLA 553

Query: 244 LYVAKKSGRNRVVCFSD 260
           +Y +K  GRN    +SD
Sbjct: 554 MYKSKDKGRNNYSFYSD 570


>gi|146281871|ref|YP_001172024.1| GGDEF family protein [Pseudomonas stutzeri A1501]
 gi|145570076|gb|ABP79182.1| GGDEF family protein [Pseudomonas stutzeri A1501]
          Length = 501

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 7/157 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           S  D L+GL N      +L  +   ++  + +  DID+FKQ+ND  GH VGD+V+ FL+ 
Sbjct: 346 SMTDPLTGLRNRRGLELALKQFELLDQGYAALALDIDHFKQVNDQHGHDVGDEVLRFLAA 405

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
           ++         + R+GGEEF      +    A++ A  L   +  +    +S     +T 
Sbjct: 406 EMRECSRPTDVLCRMGGEEFLMLLPETDATGASVAAERLLTRLRQT----TSPTGTPVTA 461

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S GIA              AD ALY AK++GR+R V 
Sbjct: 462 SVGIAFSGDYPNADATFKAADAALYQAKRAGRDRAVV 498


>gi|88858053|ref|ZP_01132695.1| hypothetical protein PTD2_11724 [Pseudoalteromonas tunicata D2]
 gi|88819670|gb|EAR29483.1| hypothetical protein PTD2_11724 [Pseudoalteromonas tunicata D2]
          Length = 745

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 110/222 (49%), Gaps = 34/222 (15%)

Query: 67  ENLSLVIISITISLL---LGYISG-----SILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           EN  L+ I ++I ++    G ++      S + E   + + + +LS  D L+GL N + F
Sbjct: 268 ENKELMPIDLSIDVVKNSTGKVTHFVVLYSDISERKKAESELQRLSNRDRLTGLPNRNLF 327

Query: 119 ---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
              +  LG+     +++ FD+D FK+IND+ GH +GD ++  L+++L+ +        RL
Sbjct: 328 FTNLKKLGAQKCHHALLVFDLDNFKKINDSLGHQLGDMLLCRLANRLIKLTRQQDSFYRL 387

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKII--------ENSQINISSGPSIHITISAGI--- 224
           GG+EFA   +G+         ND+ KI         E +Q    +G  + IT S G+   
Sbjct: 388 GGDEFALVIVGT---------NDIHKITSTAKEFLHEITQPFHMAGHELVITSSVGVVLF 438

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            E  +   I  ++  AD A+Y AK+ G NR + F+D  N   
Sbjct: 439 PEDGNTPEI--LLKNADTAMYHAKQQG-NRYLFFNDTMNRQA 477


>gi|311104551|ref|YP_003977404.1| sensory box protein 3 [Achromobacter xylosoxidans A8]
 gi|310759240|gb|ADP14689.1| sensory box protein 3 [Achromobacter xylosoxidans A8]
          Length = 313

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 11/176 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L      +  LS  D L+ + N   F S          S  + LS++  D+D+FKQ N
Sbjct: 133 EKLLTLQKELEALSFKDGLTNIANRRRFDSGFELEWARADSERKPLSVLLLDVDFFKQYN 192

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+ +  ++  L +    P   V R GGEEF      +  + A  +A+  +++
Sbjct: 193 DLYGHTQGDQCLVDIAQTLNLALDGPRDLVARYGGEEFVVLLPEADAEVARKVADRCQRL 252

Query: 203 IENSQINISSGP---SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++   I  +  P    + ++I AG      K   +  +   DQ LY AK +GRNR+
Sbjct: 253 LQKKAIVHALSPHGRRVTVSIGAGTVVPDGKTDRAGFVKAVDQQLYAAKNNGRNRI 308


>gi|258517073|ref|YP_003193295.1| diguanylate cyclase with GAF sensor [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257780778|gb|ACV64672.1| diguanylate cyclase with GAF sensor [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 567

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 10/176 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-ISSLGSYNEKLS------IVFFDIDYFKQINDNFGHP 149
           + R+  ++  D L+GL N   F + +   +   L       ++  D+D F  IN+ +GH 
Sbjct: 388 HKRLKSMASRDPLTGLYNRRYFFLLAQAEFERALREKKEFVLMLVDVDNFNNINNRYGHA 447

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V++ L   L         +GR  GEEFA     + EQ +  +A+ LR+ +      
Sbjct: 448 AGDAVLSQLGQLLSRYSEENAIIGRCEGEEFALVLTAAGEQLSRQVADRLRREVMGYSFA 507

Query: 210 ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                 + +T+S G+A   R   + +  +  +A QA+  AKK+G+NR+V F+ +E 
Sbjct: 508 AGEDNFVRLTLSIGLAVFPRDGGD-LGDLFKKAGQAVKKAKKNGKNRIVDFAKLEG 562


>gi|218133141|ref|ZP_03461945.1| hypothetical protein BACPEC_01003 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992014|gb|EEC58018.1| hypothetical protein BACPEC_01003 [Bacteroides pectinophilus ATCC
           43243]
          Length = 605

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 17/166 (10%)

Query: 107 DCLSGLLNHSAFI----SSLGSYNEKLSIVFF-----DIDYFKQINDNFGHPVGDKVIAF 157
           D  +G+LN  A      + +  +NEK S   F     DIDYFK +ND +GH  GD+VI  
Sbjct: 261 DSATGILNKKAMTDFVENKIRHFNEKGSQEPFWLAICDIDYFKNVNDTYGHLFGDEVIYR 320

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFA---AAALGSSEQEAAILANDLRKIIENSQINISSGP 214
            +  +    G    VGR+GG+EF     +A   +E  + ++   +R+ +E +  N    P
Sbjct: 321 FAQTIRTWVGDKGVVGRIGGDEFMIMLDSADDVTELRSILIG--IREELEWAFQN--KAP 376

Query: 215 SIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259
               T S G+A           +++ AD+ALY+AK+ GR+R + + 
Sbjct: 377 DYRFTTSIGVANYPKDADDYVRLFKIADKALYIAKEKGRDRFIIYD 422


>gi|119899119|ref|YP_934332.1| GGDEF/PAS/PAC-domain-containing protein [Azoarcus sp. BH72]
 gi|119671532|emb|CAL95445.1| GGDEF/PAS/PAC-domain containing protein [Azoarcus sp. BH72]
          Length = 579

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 9/160 (5%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+ L N   F       ++     + ++ +V  D+D FK IND FGH  GD+V+
Sbjct: 389 LAERDPLTNLYNRRRFHEELERMLAEATRRDLEVGLVAIDLDGFKPINDRFGHQAGDEVL 448

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +++ +  +        RLGG+EFA     +SE E + LA  L + I+       +G S
Sbjct: 449 VGVAEGVARIIRRNEMFFRLGGDEFAMLVPDTSEAELSELAARLVEAIDALHFTF-AGES 507

Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254
             +T S GIA    H E    ++  ADQA+Y +K  GRNR
Sbjct: 508 AGVTASIGIALFPHHGEGGEALMVAADQAMYRSKSDGRNR 547


>gi|89902312|ref|YP_524783.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
 gi|89347049|gb|ABD71252.1| response regulator receiver modulated diguanylate cyclase
           [Rhodoferax ferrireducens T118]
          Length = 314

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 90/173 (52%), Gaps = 13/173 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS--SLGSYNEK-----LSIVFFDIDYFKQIN 143
           K+L      +  L+  D L+GL N    +   +LG  + +     +++V+ D+D FK+IN
Sbjct: 135 KQLEHQNRALESLALHDPLTGLPNRRLLMDRMALGIAHARRNRGNMAVVYLDLDGFKEIN 194

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF--AAAALGSSEQEAAILANDLRK 201
           D  GH  GD ++  ++ +LV        V R+GG+EF  A A L   +    +++  L+ 
Sbjct: 195 DTLGHDGGDALLKMVATRLVGAVRQEDTVARVGGDEFVIALAELSHGDDMEKLVSKVLQA 254

Query: 202 IIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
           + +   I    G S+++T S G++    H + + T++  AD ALY AK +G+N
Sbjct: 255 VSKPCSIQ---GSSVNVTASVGVSVYPVHGDNVETLMKSADLALYEAKGAGKN 304


>gi|332187498|ref|ZP_08389235.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
 gi|332012427|gb|EGI54495.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
          Length = 759

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 12/164 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
            ++S  +  D L+ L N  A    + +  +K    S++  D+D FK++ND FGH +GDK+
Sbjct: 333 RKLSYHAHHDVLTNLGNRRALQERMAALIDKAKTFSLLLIDLDEFKEVNDTFGHGIGDKL 392

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFA---AAALGSSEQEAAILANDLRKIIENSQINIS 211
           +   ++ L  + G   FV R+GG+E A   A  +G +   A  +   +   +      + 
Sbjct: 393 LIHCAEVLHGLVGPDSFVARMGGDEMAIVMALPIGQATTFAQTVVTQMSNAVTIDGYRLL 452

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G SI      G+AE         ++ RAD ALY AK++GR R 
Sbjct: 453 PGCSI------GVAEWEAGLSGEELMRRADLALYDAKRAGRRRA 490


>gi|328887582|emb|CAJ67838.2| Two-component sensor histidine kinase [Clostridium difficile]
          Length = 1182

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++ + +  D L+ L N  A  S +  Y       K +++  DID FK INDN GH  GD 
Sbjct: 705 KLKERAEKDPLTDLYNKKASQSLIEEYITLDKKRKGALMIIDIDDFKGINDNLGHLYGDA 764

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISS 212
           V++ +++ L+ +F     VGR+GG+EF       SE    I  A +L K  E S   +  
Sbjct: 765 VLSEIANDLINLFRATDIVGRIGGDEFIVFIKDISETRDIINKAEELVKTFERSF--LGK 822

Query: 213 GPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259
           G +  I++S GIA+          ++R AD ALY AK  G+N   C++
Sbjct: 823 GRNYKISLSVGIAKFPQDGMDYMTLFRNADIALYSAKGKGKN---CYT 867


>gi|327540640|gb|EGF27214.1| sensory box/GGDEF family protein [Rhodopirellula baltica WH47]
          Length = 613

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 81/176 (46%), Gaps = 34/176 (19%)

Query: 99  RISQLSRI---DCLSGLLNHSAF----ISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPV 150
           R ++L R+   D L+GL N   F      SL + N +  +++  D+D FK IND  GHP 
Sbjct: 179 RTAELERVALHDGLTGLANRIKFNDRLKDSLANANSQPPAVLLIDLDQFKLINDTLGHPA 238

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD++I  +  +L  V G    V RLGG+EFA            +  N  ++ IE+    I
Sbjct: 239 GDELIRIVGQRLSAVVGAAGLVARLGGDEFA----------VVLDHNPTQRTIESIADGI 288

Query: 211 SS---------GPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRN 253
            S         G    +T S GI     E C  +    +I  AD A+Y AK  GR+
Sbjct: 289 QSSVAEPVLLDGVPFSVTASIGICGSPDENCDAD---ELIRNADIAMYRAKADGRD 341


>gi|260463139|ref|ZP_05811341.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum
           WSM2075]
 gi|259030989|gb|EEW32263.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum
           WSM2075]
          Length = 770

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 10/164 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++I  ++R D L+GL N + F        + G  +    +   D+D FK +ND  GHP+G
Sbjct: 327 DKIRFMARYDNLTGLPNRAYFHELIGEAMASGDRDRLCGLAVLDLDDFKSVNDTLGHPIG 386

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D +I  ++++L  V G  + V R GG+EF         ++ + L   + +I    Q  + 
Sbjct: 387 DGLIYAVAERLAAVAGQGITVSRFGGDEF--MVFFDRIEDESHLTIQIDEIFAALQGEVD 444

Query: 212 -SGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +G  + I  S G +  R     +  +I +AD ALY AK+ G+N
Sbjct: 445 VAGHGLRIQASGGAVLSRVRDSDVDAMIVKADLALYKAKELGKN 488


>gi|116690374|ref|YP_835997.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia
           HI2424]
 gi|254247564|ref|ZP_04940885.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
 gi|116648463|gb|ABK09104.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia
           HI2424]
 gi|124872340|gb|EAY64056.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
          Length = 790

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 12/202 (5%)

Query: 62  EYILVENLSLVIIS-ITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +Y    N+ L++ S IT+++L   G  +G I K L      ++QL+  D L+GL N  A 
Sbjct: 302 DYTHTRNVYLLMTSFITLAMLAFFGVATGLIGK-LLGREREMTQLAEYDLLTGLANRYAT 360

Query: 119 IS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           +       S+ +   +L ++F D+D FK +ND  GH  GD V+   + +L    G    +
Sbjct: 361 LRGLRNDVSMPASLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTASRLADAVGDEGSL 420

Query: 173 GRLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
            R+GG+EF     G   E+ A  LA  + ++         S   +H +I   +    ++ 
Sbjct: 421 ARIGGDEFVVVMKGDDVERRAVRLAEAIIRMFGEPFDVRGSSFVLHASIGIALHTVANES 480

Query: 232 PISTIIYRADQALYVAKKSGRN 253
            I  ++ +AD A+Y AK +G+N
Sbjct: 481 EID-LLKKADLAMYSAKDAGKN 501


>gi|255021440|ref|ZP_05293487.1| hypothetical protein ACA_1413 [Acidithiobacillus caldus ATCC 51756]
 gi|254969145|gb|EET26660.1| hypothetical protein ACA_1413 [Acidithiobacillus caldus ATCC 51756]
          Length = 280

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 10/176 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFI------SSLGSYNEKLSIVFFDIDYFK 140
           G  + +  I++++   L+  D L+GL N   F        +L    +   +   D+D FK
Sbjct: 103 GKTVSDQVIAHSQY--LAERDALTGLPNRRQFERDLLREQALVDRGQDCFVAMIDVDGFK 160

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND  GH +GD+++  ++ +L         + R GG+EF A       Q A  +A+ L 
Sbjct: 161 FLNDRHGHLLGDRLLTRVAQRLRESLRRYDGLYRFGGDEFIALLPKLHPQCAVGMADRLC 220

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + IE  + +  SG  + IT+S G+A          I+  ADQALY AK++GRNR V
Sbjct: 221 RAIERLREDDGSG--LSITVSVGLAPLQKGGDPQAILKTADQALYQAKETGRNRAV 274


>gi|163749172|ref|ZP_02156422.1| sensory transduction system, regulatory protein [Shewanella
           benthica KT99]
 gi|161331242|gb|EDQ02131.1| sensory transduction system, regulatory protein [Shewanella
           benthica KT99]
          Length = 544

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 13/167 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +LS  D L+ + N   F              N  LS++  DID FKQ ND++GH  GD
Sbjct: 359 LEELSHTDELTQIANRRKFDEQFEKEWHRAVRSNTSLSLIMIDIDNFKQFNDHYGHLAGD 418

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  ++  L          V R GGEEF      ++E E  +LA+  R IIE   I + 
Sbjct: 419 QCLRDVAKSLQSAMSRNTDLVARYGGEEFVILLPNTNESE--LLADKCRMIIEKLHIPHE 476

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRV 255
            S  S ++TIS G+      +    + +  +AD+ LY+AK  G+NRV
Sbjct: 477 PSSVSEYVTISLGVISANPTQNSDPLAFSAKADKLLYLAKDLGKNRV 523


>gi|152996801|ref|YP_001341636.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
 gi|150837725|gb|ABR71701.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
          Length = 572

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 7/170 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++  ++  D L+GL +    + +L       E  ++ F D+D FK +NDN+GH  GD V+
Sbjct: 139 KLHDMAHYDNLTGLASRPLLLENLQQIIINKEAAAVAFLDLDNFKPVNDNYGHDTGDYVL 198

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISS-G 213
             ++++L  +      + R+GG+EF       S   E     N L +++ N+ I ++   
Sbjct: 199 VTIANRLKQILRKSDTLARIGGDEFVLLLRDVSCRDECDGFLNRLIELV-NTPIALTEFE 257

Query: 214 PSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             + ++ S G+A   +      TI+ RADQ +Y AK  GRN ++ F   E
Sbjct: 258 CQVQVSASIGVALVSNDSLEADTILRRADQTMYQAKNMGRNNIIFFDPEE 307


>gi|332091682|gb|EGI96762.1| protein gmr [Shigella boydii 5216-82]
          Length = 652

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 210 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 269

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S    E  A+ + 
Sbjct: 270 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRIL 329

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR       I + +  S+ I++S       H    +TII  AD A+Y AK+ GR +  
Sbjct: 330 TRLRLPFRIGLIEVYTSCSVGISLSPE-----HGSDSATIIRHADTAMYTAKEGGRGQFC 384

Query: 257 CFS 259
            F+
Sbjct: 385 VFT 387


>gi|120610722|ref|YP_970400.1| PAS/PAC sensor-containing diguanylate cyclase [Acidovorax citrulli
           AAC00-1]
 gi|120589186|gb|ABM32626.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax citrulli
           AAC00-1]
          Length = 442

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 13/161 (8%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N SAF       ++ + S    ++++F D+D FK+IND  GH VGD+V+
Sbjct: 277 LANHDSLTGLQNRSAFQSRFEHSLARVRSRGGAVALLFIDLDGFKKINDGHGHKVGDEVL 336

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE--AAILANDLRKIIENSQINISSG 213
             ++ +L         V RLGG+EF        E +    I A  +  + E  +++   G
Sbjct: 337 RCVARRLAHAVRGSDTVARLGGDEFLVMLDTGVEADLVGHIGARIISALAEPMEVD---G 393

Query: 214 PSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253
            ++ +  S G+A     E  I  ++ +ADQA+Y AK++GR 
Sbjct: 394 HAVRVGASIGVAMHPPLEGDIELLMTQADQAMYAAKRTGRG 434


>gi|324999760|ref|ZP_08120872.1| GGDEF domain-containing diguanylate cyclase [Pseudonocardia sp. P1]
          Length = 426

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 93/179 (51%), Gaps = 25/179 (13%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ + +  D  +GLL  +A+       I+        ++++  D+D+FK +ND +GH  
Sbjct: 239 RQLEERANTDAKTGLLTAAAWRGRSHRAIARSRRQRRAVAVLVLDLDHFKSVNDGYGHLA 298

Query: 151 GDKVI----AFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQE-AAILANDLRK 201
           GD+V+    A L+DQ+  V   P  VGR GGEEF    A    G+  ++ A + A  +R 
Sbjct: 299 GDEVLSAVAATLTDQVRDV--DP--VGRFGGEEFVVLLAELPPGTEGRDLAHVAAERIRH 354

Query: 202 IIENSQINISS--GPS--IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +    +++ +  GP     +++S G++      + +  ++  AD ALY AK++GRNRV
Sbjct: 355 TVRGLAVDVEAPGGPLTITDLSVSVGVSVAGLDGDTLDELLQVADHALYAAKRAGRNRV 413


>gi|254784772|ref|YP_003072200.1| signal transduction protein, with PAS, HAMP, GGDEF and EAL domainsl
           [Teredinibacter turnerae T7901]
 gi|237686658|gb|ACR13922.1| Predicted signal transduction protein, with PAS, HAMP, GGDEF and
           EAL domainsl [Teredinibacter turnerae T7901]
          Length = 807

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 91/189 (48%), Gaps = 23/189 (12%)

Query: 87  GSILK--ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           GS+L   EL  +   + +L+  D L+ L N   F       I++   Y+++L+++  D+D
Sbjct: 353 GSLLDVTELKTAQMELEKLAFYDPLTDLPNRRFFRGHLELTIAAAKKYDKRLAVMMTDLD 412

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAIL 195
            FK+IND FGH  GD+++  +  +L     +   V R+GG+EF      + SS Q     
Sbjct: 413 DFKKINDTFGHDAGDQLLMQIGKRLKAASASIDVVSRMGGDEFMLLVKNIDSSSQLDHKA 472

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-----ADQALYVAKKS 250
            N LR + E  +IN   G  + +  S GIA      P   I Y      AD ALY AK  
Sbjct: 473 NNILRALREKMEIN---GQQVEVGGSIGIAVF----PNDAITYEELIRYADIALYNAKSM 525

Query: 251 GRNRVVCFS 259
           G N V  +S
Sbjct: 526 GGNTVSYYS 534


>gi|190890861|ref|YP_001977403.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190696140|gb|ACE90225.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 764

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 92/183 (50%), Gaps = 13/183 (7%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVF 133
           L  +I+G  ++   + ++RI  ++  D L+GL N +     L +        N K+++ +
Sbjct: 315 LATHIAGIAIERKRV-HDRIHFMAHHDDLTGLPNRAFLKERLANILDQARRNNRKVTVAY 373

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK IND  GH  GD+V+  ++ ++         V RLGG+EF    +  S  +A 
Sbjct: 374 IDLDNFKDINDGRGHAAGDEVLKEIATRMANSVRASDMVVRLGGDEFLVVLVHQSSHDAG 433

Query: 194 ILANDLRKIIE--NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250
           I A  LR++ +  N  +   SG  I +T S G+A           ++  AD+A+Y AK+ 
Sbjct: 434 I-ARRLRELQKAINRPMRGESG-DIAVTASIGVAAFPVDGATAEELLANADRAMYRAKQL 491

Query: 251 GRN 253
           GRN
Sbjct: 492 GRN 494


>gi|304409180|ref|ZP_07390801.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|307303183|ref|ZP_07582938.1| diguanylate cyclase [Shewanella baltica BA175]
 gi|304353001|gb|EFM17398.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|306913543|gb|EFN43965.1| diguanylate cyclase [Shewanella baltica BA175]
          Length = 726

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 4/136 (2%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAA-A 183
            + +++   D+D+FKQIND +GH  GD+ +  +++ L  +F   +  + R GGEEF    
Sbjct: 587 QDAMTLAILDLDHFKQINDTYGHLGGDECLKEVAELLTSLFKRDIDLISRYGGEEFLLIL 646

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRAD 241
            + ++ +  A L    +++ E   IN     S ++T S G  IA   + + +   + +AD
Sbjct: 647 PMCNALKVEAHLNEFKQQLAETVIINPQDNRSFNVTASIGAVIANATYSDSLEHWLKQAD 706

Query: 242 QALYVAKKSGRNRVVC 257
             LY+AK+ GR+RVVC
Sbjct: 707 NNLYLAKEQGRDRVVC 722


>gi|296449718|ref|ZP_06891488.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296877965|ref|ZP_06901984.1| probable signaling protein [Clostridium difficile NAP07]
 gi|296261442|gb|EFH08267.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296431033|gb|EFH16861.1| probable signaling protein [Clostridium difficile NAP07]
          Length = 1182

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 83/168 (49%), Gaps = 12/168 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++ + +  D L+ L N  A  S +  Y       K +++  DID FK INDN GH  GD 
Sbjct: 705 KLKERAEKDPLTDLYNKKASQSLIEEYITLDKKRKGALMIIDIDDFKGINDNLGHLYGDA 764

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISS 212
           V++ ++  LV +F     VGR+GG+EF       SE    I  A +L K  E S   +  
Sbjct: 765 VLSEIASDLVNLFRATDIVGRIGGDEFIVFIKDISETRDIINKAEELVKTFERSF--LGK 822

Query: 213 GPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259
           G    I++S GIA+          ++R AD ALY AK  G+N   C++
Sbjct: 823 GRKYKISLSVGIAKFPQDGMDYMTLFRNADIALYSAKGKGKN---CYT 867


>gi|288919084|ref|ZP_06413424.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EUN1f]
 gi|288349524|gb|EFC83761.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EUN1f]
          Length = 1302

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 8/178 (4%)

Query: 84   YISGSILK--ELFISYNRISQL---SRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDY 138
            YI G ++   ++    N   QL   +R D L+ L N +A + +L       +IVF D+D+
Sbjct: 1119 YIGGRLMTIHDVTTRRNMQDQLLHQARYDPLTSLPNRTALLDALRPGAGTTAIVFVDLDH 1178

Query: 139  FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LAN 197
            FKQIND FGH  GD V++ ++ +LV          RLGG+EF    LG   Q+ A+ +A 
Sbjct: 1179 FKQINDTFGHEAGDVVLSTVARRLVHACRPGDTAYRLGGDEF-VVVLGEVGQDRAVAVAR 1237

Query: 198  DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             LR+ +     +      +  T+   +      +P + ++  AD A+Y AK + R  V
Sbjct: 1238 RLRQALAAPVRHGDDLIGLSATVGVALTRASDTDP-NDLLTTADSAMYRAKHTARGTV 1294



 Score = 59.7 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 29/184 (15%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
           +R++  +  D L+G+ N +A ++++ S        N  + ++F D+D FK +ND  GH V
Sbjct: 440 DRLTDQAHTDGLTGVANRTAVMAAVDSALAAGVATNASVFLLFVDLDGFKTVNDTHGHQV 499

Query: 151 GDKVIAFLSDQL--VVVFGTPM--------FVGRLGGEEFAAAALGSSEQEAA------- 193
           GD+V+  ++ +L   V  G+           VGRL G+EF     G     A        
Sbjct: 500 GDEVLRIVARRLHDAVRTGSDRAGNSPREDVVGRLSGDEFVVLLQGVRRAAAIRVAARVV 559

Query: 194 -ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            +LA  +   ++  Q+ +S+   +   +  G + R    P   ++ +AD A+Y AK+ G 
Sbjct: 560 DLLARPM--TVDGRQLRVSASVGVSALVRGG-SPRGGVSP-DQLVRQADHAMYRAKRGGG 615

Query: 253 NRVV 256
           +R V
Sbjct: 616 SRWV 619


>gi|190894404|ref|YP_001984697.1| putative two-component response regulator protein [Rhizobium etli
           CIAT 652]
 gi|190700065|gb|ACE94147.1| putative two-component response regulator protein [Rhizobium etli
           CIAT 652]
          Length = 430

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 96/180 (53%), Gaps = 15/180 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDN 145
           EL  +  R+ +L+R D L+G+ N    + +L      G     ++++  DID+FK +ND 
Sbjct: 239 ELADANARLERLARTDPLTGIANRRWMMETLESLWRHGRETGIVAMLMCDIDHFKALNDK 298

Query: 146 FGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            GH  GD+ +  ++  +   V      V R GGEEF        E+EA  +A  +R+ +E
Sbjct: 299 LGHGEGDRCLVKVAGIIQSCVRADRDLVSRHGGEEFLIVLPDVEEEEAVAVAKRIRESVE 358

Query: 205 NSQI-NISS--GPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCF 258
            + + N SS  GPS  +T+S G+A +   +    ++ + + AD ALY AK++GRN+V  F
Sbjct: 359 AAALPNPSSSVGPS--VTLSVGVAFKSAADTGVTLANLQHEADVALYRAKEAGRNQVCVF 416


>gi|149909864|ref|ZP_01898514.1| putative GGDEF family protein [Moritella sp. PE36]
 gi|149807029|gb|EDM66987.1| putative GGDEF family protein [Moritella sp. PE36]
          Length = 491

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 6/164 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            +++  S  D L+GLLN   F+++L S   ++  S +  D+D FK +ND +GHPVGD V+
Sbjct: 317 QKLATESHHDPLTGLLNRRGFMAALKSVERHQYYSFMIIDLDNFKHVNDTYGHPVGDDVL 376

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  +         + RLGGEEF      + + +   +   + + + N   + S    
Sbjct: 377 IRVATVIQQQIREKDILLRLGGEEFGLLIAYNKDNKQINIFERICEAVANLP-HYSEDIE 435

Query: 216 IHITISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRNRVV 256
            H+T+S G       + I    +I+ +AD  LY AK +G+NRV+
Sbjct: 436 FHVTMSGGAVTTSSIDQIKLIESIMKQADALLYEAKIAGKNRVL 479


>gi|89095167|ref|ZP_01168092.1| Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF)
           [Oceanospirillum sp. MED92]
 gi|89080598|gb|EAR59845.1| Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF)
           [Oceanospirillum sp. MED92]
          Length = 296

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 12/170 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +LS  D L+GL N   F       +     Y   LS++  D+D FK++ND+ GH  
Sbjct: 114 KQLHKLSVTDELTGLFNQRHFYKVMALELDRAKRYKHPLSLICVDLDNFKKVNDSLGHLE 173

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  + D L           R GG+EF      +  + AA  A  +R +  N++   
Sbjct: 174 GDRVLRMIGDILTETLRNCDVAVRYGGDEFMVLLPETGIKSAAKTAERIRSVF-NTKCLY 232

Query: 211 SSGPS----IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S+       +++++S G+ E    E    I+ RAD A+Y +K SG N  V
Sbjct: 233 SADHEAETIVNVSMSLGVTETNGSENADQIVQRADLAMYESKSSGGNNTV 282


>gi|332143227|ref|YP_004428965.1| diguanylate cyclase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327553249|gb|AEA99967.1| diguanylate cyclase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 354

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 115/248 (46%), Gaps = 21/248 (8%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANI--FLFYIGLTPFYGLEYILVENLSLVIISITISLLL 82
           + F   F++     +A  + + NI  FL  + +TP YG    +  + + V  S+ I +  
Sbjct: 108 YAFFCVFALGIPFKLAVSVNVINILGFLGLMWITPVYGDRVPI--SAAFVAGSLFICVYA 165

Query: 83  GYI---SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132
            Y    S  +LKE   +  R+ +LS+ D LS LL+  A        ++    +   ++++
Sbjct: 166 RYRLDRSVHLLKE---TNERLLKLSKFDPLSDLLSRRALREQSEKLVALSQRHKVSMAVM 222

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQE 191
             D+D FK+ ND+FGH  GD+ I   +  +  VF      +GR GGEEF        + +
Sbjct: 223 MLDLDDFKKYNDSFGHQQGDEAIKIQARIMKQVFKRETDILGRYGGEEFIVVLSDIEKSQ 282

Query: 192 AAILANDLRKIIENSQINISSG---PSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           A + A  L    + + I  + G   P +  +I    AE      I  +I  AD+ALY AK
Sbjct: 283 ATMQAKALLDKWKETAIEHAQGAKHPLMSCSIGVVFAESVTDVSIDWLIDEADKALYEAK 342

Query: 249 KSGRNRVV 256
            +G+ + V
Sbjct: 343 ANGKAQFV 350


>gi|330466675|ref|YP_004404418.1| diguanylate cyclase [Verrucosispora maris AB-18-032]
 gi|328809646|gb|AEB43818.1| diguanylate cyclase [Verrucosispora maris AB-18-032]
          Length = 527

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 20/176 (11%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSA---FISSLG---SYNEKLSIVFFDIDYFKQINDNF 146
           L   + +  + ++ D L+G+ N      F+ +L    + +  ++++  DID FK IND+ 
Sbjct: 362 LRWQHEQAERAAQTDPLTGVANRRGLDRFLRALAHPDAADHPVAVLAVDIDRFKHINDSL 421

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD V+  ++  L        FV RLGG+EF A   G+    A ++A    + +E +
Sbjct: 422 GHSTGDDVLRAVAQLLTTSVRQGDFVARLGGDEFVAILPGADATLARLVAQ---RTVE-A 477

Query: 207 QINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              +++ P+    +S G+A     C ++ +S     AD A+Y AK++G NR  C +
Sbjct: 478 VAGLTAWPA---QVSVGVAYGPAYCLEQALS----HADSAMYAAKRAGGNRASCLA 526


>gi|317499166|ref|ZP_07957443.1| diguanylate cyclase domain-containing protein [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316893579|gb|EFV15784.1| diguanylate cyclase domain-containing protein [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 450

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 27/168 (16%)

Query: 104 SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
             ID L+G++    F+    +       Y  +   +F D+D+FKQIND  GH  GD+ + 
Sbjct: 294 GEIDFLTGVMGRRLFLQHCQNIQNDQRIYGHQGWFLFLDVDWFKQINDKLGHMAGDETLK 353

Query: 157 ----FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
               FL +Q    F     VGR+GG+EFA        QE  +L  +L +  +N      S
Sbjct: 354 KFAMFLKEQ----FEPYGAVGRVGGDEFAVMIEEEMSQE--VLEKELEQFFQN-----IS 402

Query: 213 GPSIHITISA--GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           G    +T+S   G+    + + I  ++ + D+ LY AK +GR    CF
Sbjct: 403 GIQKEVTVSCSIGVYRFTYPKTIKELLTKTDEILYEAKANGRG---CF 447


>gi|218780397|ref|YP_002431715.1| diguanylate cyclase with PAS/PAC sensor [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761781|gb|ACL04247.1| diguanylate cyclase with PAS/PAC sensor [Desulfatibacillum
           alkenivorans AK-01]
          Length = 312

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 89/169 (52%), Gaps = 12/169 (7%)

Query: 98  NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +++ +LS +D L+ L N        +A ++    Y     I+F D++  KQ+N  +G PV
Sbjct: 143 DKLRRLSLVDSLTNLANRKMAEIRLAAKLNEFSRYGWPFGILFCDVNDLKQVNTLYGRPV 202

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209
           GD+V+  ++  L     T  F+ R G +EF        +Q  A +A  + ++  N++++ 
Sbjct: 203 GDQVLKAIARTLEGNLRTSDFISRWGDDEFLIILANVDKQTLARVAQKVERLTANTKVHL 262

Query: 210 --ISSGPSIHITIS-AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  G ++ +T S  G+  + H + + T++ RAD+ +Y ++ +G N+V
Sbjct: 263 DPLDRGKAVSVTNSIGGVIAQPH-DTVETLLARADELMYRSRHAGVNQV 310


>gi|152982285|ref|YP_001352393.1| diguanylate cyclase [Janthinobacterium sp. Marseille]
 gi|151282362|gb|ABR90772.1| diguanylate cyclase [Janthinobacterium sp. Marseille]
          Length = 300

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYF 139
            S + E  I   ++ +LS  D L+GL N       L  + E L       S+  FD+D  
Sbjct: 122 ASNISERHILEGKLRELSDTDQLTGLFNRRKLEHDLTLHYESLLRYSVPTSVFIFDLDNL 181

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND  GH  GD++I  ++D             R GG+EF  A   +  ++A  LA  L
Sbjct: 182 KKINDTKGHHAGDEIIQAVADICRSAIRKADTACRFGGDEFVIALPNTELEQAMQLAERL 241

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
                      S G ++ +T S G+     ++      + RAD+ALY AK  G++R+V 
Sbjct: 242 HDRFRKELSRFSVGDTV-VTASIGVTSMVPEDRSYEDTLKRADRALYEAKSMGKDRIVS 299


>gi|74317498|ref|YP_315238.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Thiobacillus denitrificans ATCC 25259]
 gi|74056993|gb|AAZ97433.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 1012

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 14/175 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I  L+  D L+GL N    +  L           E  +++  D+D FK +ND  GH VG
Sbjct: 578 QIRSLAYFDSLTGLPNRRLLLDRLNQARLSSERTREYGALMILDLDRFKTLNDTQGHDVG 637

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSEQEAAI----LANDLRKIIEN 205
           D+++  ++ +L         V RLGG+EF       GS E +A      +A  +R  +  
Sbjct: 638 DRLLIDVARRLTASVRQNDTVCRLGGDEFVVVLEGFGSDEDQAVTQAEAIAEKVRAALNQ 697

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                 +G   H T S G+   C H      ++ +AD ALY AK +GRN V  F+
Sbjct: 698 PYSLSGNGSRFHSTTSVGLTLFCGHDATADMLLKQADVALYQAKDAGRNLVRFFN 752


>gi|329900750|ref|ZP_08272570.1| PleD-like protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327549392|gb|EGF33959.1| PleD-like protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 593

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 87/167 (52%), Gaps = 18/167 (10%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKV-IAFLS 159
           D L+GL N   F + L +   +      +++V  D+D FK++ND +GHP GD+V I F  
Sbjct: 432 DHLTGLYNRRHFETCLNAVLHESSGRFPIAVVIVDLDLFKRVNDTYGHPFGDEVLIRFAR 491

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA----AILANDLRKIIENSQINISSGPS 215
                + G+ M   R GGEEF      +  + A    A +A + R ++ ++  +  +G  
Sbjct: 492 LVEANLRGSDMLC-RYGGEEFCMLLRDADGETAVNKIATIAAEYRSLVISNGTHTLTG-- 548

Query: 216 IHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR-VVCFSD 260
              T SAG+AE  H     + ++ RAD ALY AK +GRNR +V  SD
Sbjct: 549 --CTFSAGVAEYPHHGVTRNELLMRADTALYAAKMAGRNRALVAISD 593


>gi|319761223|ref|YP_004125160.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|317115784|gb|ADU98272.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
          Length = 888

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 19/177 (10%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           + R+  LS+ D L+GL N + F+  LG        + E+++++  ++D FK +ND++GH 
Sbjct: 454 HQRLECLSQCDSLTGLPNRAWFVEQLGQALCQAQVHGEQMAVLLLNLDRFKDVNDSYGHA 513

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAI----LANDLRKII 203
           VGD+V+  ++ Q+ +       VGR+ G+E A  A  L  S+  AA+    +A   +   
Sbjct: 514 VGDEVLRHITAQVCMSLRPGDLVGRMAGDEIAVLARNLRHSDGAAAVAQHMIAAASKPWR 573

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
               I + +G S+ I++        H      ++  A  A+Y AK  GR    CF D
Sbjct: 574 TPDGIEVVAGVSVGISMFPE-----HARTAEQLLQGAHSAVYGAKARGRG-AHCFFD 624


>gi|291279460|ref|YP_003496295.1| signal transduction response regulator [Deferribacter desulfuricans
           SSM1]
 gi|290754162|dbj|BAI80539.1| signal transduction response regulator [Deferribacter desulfuricans
           SSM1]
          Length = 436

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 92/200 (46%), Gaps = 21/200 (10%)

Query: 77  TISLLLGYISGSILKELFISYNRIS----QLSRIDCLSGLLNH-------SAFISSLGSY 125
           T  LLL  I+   +K++    ++I+    + +  D L+GL N        +  IS+   Y
Sbjct: 235 TEELLLKIINNIKVKKINDELDKINKELFEKATTDPLTGLYNRRFIIEQLNILISNYKRY 294

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
               +++  DID+FK+IND +GH +GD+++  LS  L         +GR GGEEF     
Sbjct: 295 LVPFAVMILDIDHFKRINDTYGHDIGDEILINLSKILKETLRKTDIIGRFGGEEFLCLIP 354

Query: 186 GSSEQEAAI----LANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRA 240
            +  +   I    L N++RK     +        I  TIS G      K +  + II  A
Sbjct: 355 NTPSENLPIIISKLLNNIRKFKYKYE-----EDEITFTISIGCCNFTKKYKTDNEIIKCA 409

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D  LY AK +GRN+     D
Sbjct: 410 DDMLYKAKNNGRNQAFLLLD 429


>gi|237756795|ref|ZP_04585285.1| signal transduction response regulator [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691047|gb|EEP60165.1| signal transduction response regulator [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 432

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 91/182 (50%), Gaps = 7/182 (3%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF 134
           S+ +  LL  I    L ++ I Y++++Q+     L  +L  SA  +    +   +SI+  
Sbjct: 250 SLKLIYLLNKIYTENLSQIAI-YDKLTQVYNRALLDSILYKSAKYAK--RHKLPISIIML 306

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID FK IND +GH  GD+++  ++  +        +  R GGEEF      +    A +
Sbjct: 307 DIDNFKGINDTYGHLEGDRILKTVASIIKSSIRESDYAFRYGGEEFLILLPNTDINGAIV 366

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +    RK IEN   ++       ITIS GI +  + +     I +AD+ LY+AKKSG+NR
Sbjct: 367 VGEKTRKNIENFDFSLDR----KITISCGIKQIENFDNPYLDIEQADKYLYIAKKSGKNR 422

Query: 255 VV 256
            +
Sbjct: 423 CI 424


>gi|258404570|ref|YP_003197312.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
 gi|257796797|gb|ACV67734.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
          Length = 659

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 100/219 (45%), Gaps = 33/219 (15%)

Query: 56  TPFYGLEYILVENLSLVIISITISLL------LGYISGSILKELFISYNRISQLSRIDCL 109
           TPF G      ++  LV + IT SL+      +  + G  + E   S  RI  L+  D L
Sbjct: 420 TPFVGERSYRTKSGHLVPMEITASLVHYQGRRVVSVVGRDISERKKSEERIRYLAYHDQL 479

Query: 110 SGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GL N + F+  L           +KL + F D++ FK IND  GH VGD+++  ++++L
Sbjct: 480 TGLPNRTLFLDRLEQSLKEARRNRDKLGLFFLDLNDFKHINDCHGHKVGDRLLLQVAERL 539

Query: 163 VVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDL----------RKIIENSQINIS 211
                    V RLGG+EF      G+S      +A  L           +I +  +I +S
Sbjct: 540 QSSLREMDTVARLGGDEFVVIVKGGASRHNCRKVARKLIQSIDTPFLVEEIDQEVRIGLS 599

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
            G SI +  +A + E         +I  AD A+Y AK++
Sbjct: 600 IGISIFLDDAATLEE---------LIQHADTAMYAAKRN 629


>gi|220934671|ref|YP_002513570.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995981|gb|ACL72583.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
          Length = 854

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 3/125 (2%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           +L+++  D+D FK++ND  GHPVGDK++  ++ +L         V RLGG+EFA  AL +
Sbjct: 446 QLAVLLLDLDRFKEVNDALGHPVGDKLLQQVARRLRTSLRGSDTVARLGGDEFAILALNT 505

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYV 246
               A   A  + + I  S +      ++++  S GIA    H    S+++ RAD A+Y 
Sbjct: 506 DGASALEFAGKIHQAI--SGVFTIEHQNVYVGTSIGIALYPEHGNDASSLMRRADIAMYA 563

Query: 247 AKKSG 251
           AK  G
Sbjct: 564 AKHQG 568


>gi|170733711|ref|YP_001765658.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia
           MC0-3]
 gi|169816953|gb|ACA91536.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia
           MC0-3]
          Length = 790

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 12/202 (5%)

Query: 62  EYILVENLSLVIIS-ITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +Y    N+ L++ S IT+++L   G  +G I K L      ++QL+  D L+GL N  A 
Sbjct: 302 DYTHTRNVYLLMTSFITLAMLAFFGVATGLIGK-LLGREREMTQLAEYDLLTGLANRYAT 360

Query: 119 IS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           +       S+ +   +L ++F D+D FK +ND  GH  GD V+   + +L    G    +
Sbjct: 361 LRGLRNDVSMPASLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTASRLADAVGDEGSL 420

Query: 173 GRLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
            R+GG+EF     G   E+ A  LA  + ++         S   +H +I   +    ++ 
Sbjct: 421 ARIGGDEFVVVMKGDDVERRAVRLAEAIIRMFGEPFDVRGSSFVLHASIGIALHTVANES 480

Query: 232 PISTIIYRADQALYVAKKSGRN 253
            I  ++ +AD A+Y AK +G+N
Sbjct: 481 EID-LLKKADLAMYSAKDAGKN 501


>gi|170723285|ref|YP_001750973.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas putida W619]
 gi|169761288|gb|ACA74604.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas putida W619]
          Length = 334

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 11/167 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L   D L+GL N   F   L           ++LS++  D+DYFK  ND+FGH  GD
Sbjct: 165 LQRLMNSDGLTGLSNRRHFDEYLELEWRRAMREQQQLSLLMIDVDYFKVYNDSFGHLAGD 224

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  +++ +      P     R GGEEFA     +S   A ++A  LR+ +    I + 
Sbjct: 225 EALRKVAEAIRGSCSRPTDLPARYGGEEFALVLPNTSPGGARLVAEKLRQTVHGLNIPHT 284

Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255
           +      +T+S G+A +          +I  AD+ LY+AK SGRN V
Sbjct: 285 APQDDSRLTVSIGLATQTPAIGSHCRQLISAADKGLYLAKNSGRNTV 331


>gi|186472442|ref|YP_001859784.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           phymatum STM815]
 gi|184194774|gb|ACC72738.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           phymatum STM815]
          Length = 944

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           +EL  +  R+   +  D L+GL N S     L        S  E LS++F D+D FK +N
Sbjct: 500 QELDAANARLLHENYHDALTGLPNRSHLYERLAAAWLGYSSRGEPLSVLFIDLDRFKVVN 559

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GD ++  ++ +L         + RLGG+EFA    G+S Q    LA  +    
Sbjct: 560 DSLGHLFGDALLVEVAGRLRDCLRRDDLLARLGGDEFAVVVPGASLQTVLTLAERILAAF 619

Query: 204 ENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +  NI    ++  + S G+  A+  H    + ++  AD A+Y  K  GR+    F+
Sbjct: 620 D-TPFNIGE-QTVFTSCSVGVVSADSAHHREPADLLRDADAAMYRVKNRGRDSFAVFN 675


>gi|327482292|gb|AEA85602.1| diguanylate cyclase [Pseudomonas stutzeri DSM 4166]
          Length = 620

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 4/129 (3%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            E ++++  D+D+FK IND  GH  GD ++  L  +L  +  +     RLGG+EFA    
Sbjct: 478 GESIALLLIDLDHFKPINDGHGHDAGDLLLRTLGQRLRGLVRSSDMAARLGGDEFAILLT 537

Query: 186 GSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQA 243
           G++ EQ+A  +A   R + E S      G S+ +T+S G A    H E  S +   AD+A
Sbjct: 538 GATVEQDAGQVAE--RLLHELSLPVPYRGTSLAVTVSVGAAFFPHHAEEFSRLYKAADEA 595

Query: 244 LYVAKKSGR 252
           LY AK+ GR
Sbjct: 596 LYRAKQQGR 604


>gi|328544581|ref|YP_004304690.1| diguanylate cyclase with PAS/PAC sensor [polymorphum gilvum
           SL003B-26A1]
 gi|326414323|gb|ADZ71386.1| Diguanylate cyclase with PAS/PAC sensor [Polymorphum gilvum
           SL003B-26A1]
          Length = 325

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 15/175 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPV 150
            R++ +++ D L+GL N  AF ++L      +  EK  +S++  D+D+FK IND +GH V
Sbjct: 141 ERLALMAQTDGLTGLANRRAFDAALEREWQRTLREKSQISLLLIDLDHFKGINDMYGHQV 200

Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD  +  ++  +      P     R GGEE      G+ +  AA +A  LR+ +E  ++ 
Sbjct: 201 GDDCLRAVAAVVGATARRPSDLAARYGGEELTLILPGTDKDAAAAIAEALRRDVEALRLP 260

Query: 210 ISSGPSIH--ITISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNRVVC 257
             + P+ +  +T+S G A    +          ++  AD ALY AK+ GRNRVV 
Sbjct: 261 NEANPAGNGVLTVSIGAATAFARIGGSIAMPEGLVMAADNALYRAKEDGRNRVVT 315


>gi|255525289|ref|ZP_05392230.1| diguanylate cyclase [Clostridium carboxidivorans P7]
 gi|296187794|ref|ZP_06856188.1| diguanylate cyclase (GGDEF) domain protein [Clostridium
           carboxidivorans P7]
 gi|255511054|gb|EET87353.1| diguanylate cyclase [Clostridium carboxidivorans P7]
 gi|296047751|gb|EFG87191.1| diguanylate cyclase (GGDEF) domain protein [Clostridium
           carboxidivorans P7]
          Length = 500

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 22/180 (12%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--------EKLSIVFFDIDYFK 140
           +LKE   ++N + + + ID L+G  N  AF + L +          E L ++  DID+FK
Sbjct: 333 MLKE---THNDLEEAADIDSLTGAYNRRAFNNLLSTVKQEINNRSLESLGVLLLDIDHFK 389

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND  GH  GD V+  L++ +    G    V R GG+EFA      S++    +A ++R
Sbjct: 390 ELNDTSGHLAGDNVLKKLAEIMKAAVGKRS-VFRFGGDEFAVVIRNVSDERLLSIAEEIR 448

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            +   + +N         T+S G A+       I  +I  AD+ALY++KKS RN+V  F+
Sbjct: 449 -LKGEAALN-------GCTVSIGAAKFPKDTYSIDELIDFADKALYISKKS-RNKVTIFA 499


>gi|229020569|ref|ZP_04177311.1| Sensory box protein [Bacillus cereus AH1273]
 gi|229026787|ref|ZP_04183119.1| Sensory box protein [Bacillus cereus AH1272]
 gi|228734510|gb|EEL85172.1| Sensory box protein [Bacillus cereus AH1272]
 gi|228740733|gb|EEL90989.1| Sensory box protein [Bacillus cereus AH1273]
          Length = 688

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 11/176 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L+    ++  L+  D L+GL N   F   L +           ++++F D+D FK+IND 
Sbjct: 249 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKTILNTAQNNTNDVAVMFLDLDRFKKINDR 308

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIE 204
            GH VGD ++  ++ +L     +   V R GG+EF        SE+ AA +A  +  I+ 
Sbjct: 309 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPDMYSEKSAAFIAEQILTIL- 367

Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++        + +T S GIA    +   ++ ++  AD A+Y AK +G+NR + FS
Sbjct: 368 -NKPYFIKDEELSVTPSIGIAMFPEYGTDVTELMKNADMAMYRAKANGKNRFIFFS 422


>gi|255654970|ref|ZP_05400379.1| putative signaling protein [Clostridium difficile QCD-23m63]
          Length = 982

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 83/168 (49%), Gaps = 12/168 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++ + +  D L+ L N  A  S +  Y       K +++  DID FK INDN GH  GD 
Sbjct: 505 KLKERAEKDPLTDLYNKKASQSLIEEYITLDKKRKGALMIIDIDDFKGINDNLGHLYGDA 564

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISS 212
           V++ ++  LV +F     VGR+GG+EF       SE    I  A +L K  E S   +  
Sbjct: 565 VLSEIASDLVNLFRATDIVGRIGGDEFIVFIKDISETRDIINKAEELVKTFERSF--LGK 622

Query: 213 GPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259
           G    I++S GIA+          ++R AD ALY AK  G+N   C++
Sbjct: 623 GRKYKISLSVGIAKFPQDGMDYMTLFRNADIALYSAKGKGKN---CYT 667


>gi|167755282|ref|ZP_02427409.1| hypothetical protein CLORAM_00787 [Clostridium ramosum DSM 1402]
 gi|167705332|gb|EDS19911.1| hypothetical protein CLORAM_00787 [Clostridium ramosum DSM 1402]
          Length = 1139

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 105/229 (45%), Gaps = 23/229 (10%)

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLL--------LGYISGSILKELFISYNRIS 101
           LF  G+T  Y     L        +S TI LL         G++    + +  I    + 
Sbjct: 208 LFEQGITEVYCEYRSLNATQKQGWVSTTIHLLHVGETNKLFGFVYVKDINDKKIHELELL 267

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-NEKL----SIVFFDIDYFKQINDNFGHPVGDKVIA 156
           + S+ D L+ L N +AF   +  Y N+K     +++  DID FK INDN GH  GD V+ 
Sbjct: 268 RQSQSDPLTKLYNRTAFGQIVNEYLNKKRESSSALLLIDIDNFKNINDNLGHSFGDTVLC 327

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSE---QEAAILANDLRKIIENSQINIS 211
            ++ +L  +F     +GR GG+EF      + S +    +A+I+  +L     ++    +
Sbjct: 328 EIAHKLTNIFNNKAIIGRYGGDEFIIFIKDIPSKKYVYHKASIILEELHLYYSSNYQEYT 387

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              SI IT S    +  H+     +  + D ALY AKK G+++   F+D
Sbjct: 388 ISSSIGITFSPDDGKTLHE-----LFEQTDSALYRAKKLGKSQYFAFND 431



 Score = 48.5 bits (114), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 28/197 (14%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI----DCLSGLLNHSAF 118
           YI V+N S+   +I    LL  I+ SI+ E  I   R+ + ++     D LSGLLN ++F
Sbjct: 695 YIGVDNPSINQNTIA---LLDSINFSIVNE--IKKRRLYEKTQYNLYHDNLSGLLNRNSF 749

Query: 119 ISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
              L   N  +    ++  DI+  K+IN +FGH  GDK+I  +S  +   F +   + RL
Sbjct: 750 TQFLSYENSAVYSQGVILADINGLKEINRDFGHYHGDKIITIISSIMNSYFPSEK-IFRL 808

Query: 176 GGEEFAAAALGSSEQEAAILANDL--RKIIE-NSQINISSGPSIHITISAGIAERCHKEP 232
            G+EF             I+ NDL  ++ IE   Q+  +   S    +S G         
Sbjct: 809 SGDEF------------IIIVNDLEYKQFIEATKQMEDTLLGSTPNGVSLGYTWSEDNMD 856

Query: 233 ISTIIYRADQALYVAKK 249
           I+ +I++A++ + + K+
Sbjct: 857 INDLIHQAEELMMINKQ 873


>gi|222054192|ref|YP_002536554.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. FRC-32]
 gi|221563481|gb|ACM19453.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. FRC-32]
          Length = 305

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 91/181 (50%), Gaps = 18/181 (9%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           EL  S   + QLS  D L+ L N    + +L    ++       LS++  DID+FK++ND
Sbjct: 130 ELKRSNELLKQLSNTDPLTHLYNRRYLMEALDREYQRAARKESSLSLIIIDIDHFKKVND 189

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR---- 200
           N+GH  GD V+A ++  L  +  +     R GGEEF      ++  +A + A   R    
Sbjct: 190 NYGHQQGDVVLAAVAALLKKMVRSYDVAARYGGEEFVVLLSETALSQAMLFAERFRCAVQ 249

Query: 201 KIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+   ++N      + IT+S G+A       + + ++  +AD+ALY AK+ GRN+    
Sbjct: 250 EIVFTGKMN-----GLTITVSLGVATFPSAKVDCVDSLFRQADEALYKAKQGGRNKAEAM 304

Query: 259 S 259
           S
Sbjct: 305 S 305


>gi|115360028|ref|YP_777166.1| RNase II stability modulator [Burkholderia ambifaria AMMD]
 gi|115285316|gb|ABI90832.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria AMMD]
          Length = 667

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 17/186 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDID 137
           SG  + E   +  R+++L+  D L+GL N  A    +G+           ++ I+F D+D
Sbjct: 218 SGIDVTEERNAQQRLTELANTDMLTGLPNRHAISERIGAALAADRTDMRGQVGILFLDLD 277

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSS---EQEAA 193
            FK++ND++GH  GD+++  +S  +     +   + RLGG+EF      G+    E  + 
Sbjct: 278 NFKRVNDHYGHITGDRLLQDVSTIISGCLPSGATLARLGGDEFLVLFEHGTRPLLEATSQ 337

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           I+   LR  I    + I +  SI I +        H + + T+I  AD A+YVAK+ G++
Sbjct: 338 IILERLRTPIHLGLMEIYTSCSIGIAMYP-----QHGDSLETLIRSADTAMYVAKEEGKH 392

Query: 254 RVVCFS 259
               FS
Sbjct: 393 TYRVFS 398


>gi|297625105|ref|YP_003706539.1| diguanylate cyclase/phosphodiesterase [Truepera radiovictrix DSM
           17093]
 gi|297166285|gb|ADI15996.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Truepera radiovictrix DSM 17093]
          Length = 1033

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
           +R+S  +R D L+GLLN SAF   L S  E+       L+++F D+D FK++ND  GH  
Sbjct: 573 DRLSYNARHDALTGLLNRSAFEERLRSAVERAAKSGATLAVLFLDLDRFKRVNDTLGHAA 632

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD ++   + +L    G    + R+GG+EF           A + A     I+E      
Sbjct: 633 GDALLKLATARLRACVGEAA-LARVGGDEFLCLLEAPRGAAAGLAAGVASCIVEAFDAPF 691

Query: 211 SSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + G   + + I+ G++         +T+I  AD A+Y  K +G++ VV FS
Sbjct: 692 TLGARDVFLGITVGVSTFPSDGTDAATLIRNADTAMYQGKVAGKHTVVFFS 742


>gi|317053346|ref|YP_004119113.1| diguanylate cyclase [Pantoea sp. At-9b]
 gi|316953085|gb|ADU72557.1| diguanylate cyclase [Pantoea sp. At-9b]
          Length = 297

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 82/162 (50%), Gaps = 10/162 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKV 154
           Y     LS  D L+ L N       L    E+++ +F   DID FK+IND +GH VGD V
Sbjct: 139 YRSAVGLSLTDELTRLPNRRHMNMKLRD-TEQIAGMFCIMDIDDFKKINDTYGHEVGDSV 197

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +    + L        F+ R GGEEF+    G  + +  I   +++  +  S I+I + P
Sbjct: 198 LKQTGNILRHFINDKTFIARSGGEEFSIILTGDGQSKECI--EEIKHAL--SAISIDNHP 253

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              +T S G+A +  ++  S+ +  AD ALY +K+ G+NR+ 
Sbjct: 254 ---VTFSFGVAVKKEQQTTSSALSAADCALYDSKRHGKNRIT 292


>gi|77920043|ref|YP_357858.1| GGDEF domain-containing protein [Pelobacter carbinolicus DSM 2380]
 gi|77546126|gb|ABA89688.1| diguanylate cyclase [Pelobacter carbinolicus DSM 2380]
          Length = 498

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 84/174 (48%), Gaps = 17/174 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAFIS--SLGSYNEK-----LSIVFFDIDYFKQINDNFGHPV 150
           N + +++  D L+G  N   F     +  Y  K      S+V FD+D FK IND  GH  
Sbjct: 317 NTLEEMATTDKLTGAWNRREFDRCFDMACYLSKRQGRPFSVVLFDVDDFKTINDELGHMA 376

Query: 151 GDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           GD+V   +  L+D+ +        V R GG+EF    + +    A  +A  LR+ I N  
Sbjct: 377 GDQVLKEVVRLADEHI---RQDDLVVRWGGDEF-VLLVHNDLAHARQVAERLREEICNRD 432

Query: 208 -INISSG--PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +N  SG    + +TIS G+      E +  ++ RAD ALY +KK G+N+ V  
Sbjct: 433 LLNGVSGSCDEVAVTISCGVVMYDEGETLDHLMMRADAALYESKKQGKNQTVTL 486


>gi|59711957|ref|YP_204733.1| GGDEF domain-containing protein [Vibrio fischeri ES114]
 gi|59480058|gb|AAW85845.1| GGDEF domain protein [Vibrio fischeri ES114]
          Length = 681

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 83/171 (48%), Gaps = 8/171 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++  LS  D L+ + N  A    L    + L   S++  DIDYFK+ ND +GH  GD+ +
Sbjct: 511 KLHDLSLTDGLTAVPNRRALELHLLENKQDLTVRSVMMIDIDYFKKYNDTYGHKKGDEAL 570

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGP 214
             ++  L        F+ R GGEEF      +++ E+  +A  ++  I +  I + SS  
Sbjct: 571 IAVAKALKESCKENDFLTRFGGEEFIIVMKNTNKAESIQMAEKIQACITSLCIPHESSDV 630

Query: 215 SIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           S  IT+S GI      +  K      I  AD+ALY +K  GRN+   F DI
Sbjct: 631 SSFITLSIGITTYSVNKDDKANNEKAIIEADKALYYSKNKGRNQSNHFYDI 681


>gi|93006796|ref|YP_581233.1| diguanylate cyclase [Psychrobacter cryohalolentis K5]
 gi|92394474|gb|ABE75749.1| diguanylate cyclase (GGDEF domain) [Psychrobacter cryohalolentis
           K5]
          Length = 506

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 1/123 (0%)

Query: 111 GLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           GL      + ++G   + +SI+  D+D+FK INDN+GH VGD+V++ ++  L+       
Sbjct: 275 GLTQMQQALLAMGD-QQDVSIILLDLDWFKNINDNYGHDVGDQVLSEVAQTLLNSLTEEA 333

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            V R GGEEF      +S      +A  LR+ I    I+  +    ++T S G+    H 
Sbjct: 334 IVSRYGGEEFLIVLPDTSHDSVMTIAKQLRRDIAEQVISGDNHTDFNVTASLGVYTLTHA 393

Query: 231 EPI 233
           E I
Sbjct: 394 ERI 396


>gi|255319974|ref|ZP_05361174.1| diguanylate cyclase [Acinetobacter radioresistens SK82]
 gi|255302994|gb|EET82211.1| diguanylate cyclase [Acinetobacter radioresistens SK82]
          Length = 522

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 72/153 (47%), Gaps = 8/153 (5%)

Query: 107 DCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GLLN      F   +       S++  DID+FK+IND +GH  GD+V+  L+  ++
Sbjct: 371 DPLTGLLNRRGMQFFTKGMIDSKVPFSVLLIDIDHFKRINDTYGHDEGDEVLKTLAKIML 430

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
             F       R GGEEF       ++QE    A   R  +E   IN        IT+S G
Sbjct: 431 ENFRKNDLCCRHGGEEFIVIIPNVNKQEVYESAERFRHAVETYIINNVG----RITVSIG 486

Query: 224 IAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
           IA         + ++  AD  LY AK  GRN+V
Sbjct: 487 IASWPESSNSFTEVLKIADNNLYHAKNHGRNQV 519


>gi|253998705|ref|YP_003050768.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. SIP3-4]
 gi|253985384|gb|ACT50241.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. SIP3-4]
          Length = 674

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 9/165 (5%)

Query: 106 IDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+G+ N +       A ++S  +  E+   ++ D+D FK +ND  GH VGD ++  +
Sbjct: 253 LDPLTGIHNRTTLETRLQAALASAHTQGEQHMFMYLDLDQFKIVNDTCGHAVGDALLKQI 312

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
              +     T   + RLGG+EFA   L      A  +A+D+   IE  +         H+
Sbjct: 313 VSIIRGCLSTDALLARLGGDEFAILLLCCDSDAAGKIADDICNRIEAFRF-AHEQKRFHV 371

Query: 219 TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           + S G+    H+ + IS ++  A+ A Y AK+ GRNR   + D +
Sbjct: 372 SASIGLVRIDHQWQDISALLQIANAACYTAKQEGRNRTHLYRDTD 416


>gi|167768583|ref|ZP_02440636.1| hypothetical protein CLOSS21_03142 [Clostridium sp. SS2/1]
 gi|167710107|gb|EDS20686.1| hypothetical protein CLOSS21_03142 [Clostridium sp. SS2/1]
          Length = 488

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 98/200 (49%), Gaps = 23/200 (11%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQL---SRIDCLSGLLNHSA---FISSLGS 124
           +++  + ++LL+ YI       ++ ++ R  +L   ++ D L+GL N          L S
Sbjct: 298 MIVFIVLVTLLILYI-------VYENHTRNKELLKYAQTDALTGLYNKETTEQLTDELLS 350

Query: 125 YNEKLSIVFF--DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
            +E     F   D+D FKQIND +GH VGD V+      L   F     +GR+GG+EF  
Sbjct: 351 EDENKYHAFLILDVDCFKQINDIYGHAVGDIVLQKFGKLLKGTFREGDILGRIGGDEFGV 410

Query: 183 AALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHITISAGIAER---CHKEPISTIIY 238
                  ++ A+  A +L    +  +I+   G +I I+I    A +   C+ +    +  
Sbjct: 411 IMKNIQTKDIAMKKAEELLAKTQAYKIDELKGNNISISIGISTAPQDGDCYMD----LYK 466

Query: 239 RADQALYVAKKSGRNRVVCF 258
           RADQALY AK+SG+ RV  +
Sbjct: 467 RADQALYQAKRSGKARVCNY 486


>gi|32472612|ref|NP_865606.1| response regulator [Rhodopirellula baltica SH 1]
 gi|32443849|emb|CAD73290.1| conserved hypothetical protein-putative response regulator
           [Rhodopirellula baltica SH 1]
          Length = 614

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 81/176 (46%), Gaps = 34/176 (19%)

Query: 99  RISQLSRI---DCLSGLLNHSAF----ISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPV 150
           R ++L R+   D L+GL N   F      SL + N +  +++  D+D FK IND  GHP 
Sbjct: 180 RTAELERVALHDGLTGLANRIKFNDRLRDSLANANSQPPAVLLIDLDQFKLINDTLGHPA 239

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD++I  +  +L  V G    V RLGG+EFA            +  N  ++ IE+    I
Sbjct: 240 GDELIRIVGQRLSAVVGAAGLVARLGGDEFA----------VVLDHNPTQRTIESIADGI 289

Query: 211 SS---------GPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRN 253
            S         G    +T S GI     E C  +    +I  AD A+Y AK  GR+
Sbjct: 290 QSSVAEPVLLDGVPFSVTASIGICGSPDENCDAD---ELIRNADIAMYRAKADGRD 342


>gi|85710042|ref|ZP_01041107.1| putative diguanylate cyclase (GGDEF) [Erythrobacter sp. NAP1]
 gi|85688752|gb|EAQ28756.1| putative diguanylate cyclase (GGDEF) [Erythrobacter sp. NAP1]
          Length = 588

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 104/238 (43%), Gaps = 14/238 (5%)

Query: 32  SIFFSIFIATVIFIANIFLFYIGLTPFYG---LEYILVENLSLVIISITISLLLGYISGS 88
           S  F  F  + I ++++     GL  + G   L+  L   + L +I I++++   +++  
Sbjct: 329 SARFLAFAWSPIILSSLERMMRGLGVYAGPSQLDQTLYLAVGLEVIVISLAIASRFLAIR 388

Query: 89  ILKELFISYNRI-SQLSRIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDN 145
             ++  ++   +  QLS  D L+GL+N  A          +   +    D+D+FK IND 
Sbjct: 389 RERDAAVTEAELLEQLSTHDPLTGLMNRRAVEERFADLQAQGFDTFALIDLDHFKAINDR 448

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH VGDK +      L           RLGGEEF     G    E    A  LR+ I  
Sbjct: 449 FGHQVGDKALVACGHALRGNDERDSIAVRLGGEEFVVLLRGKGALER---AEALRQSITV 505

Query: 206 SQINISSGPSIHITISAGIAE--RCHKEPI--STIIYRADQALYVAKKSGRNRVVCFS 259
                  G    +T S G+ E  R   + +    +  RADQ LY AK +GRNR  CF 
Sbjct: 506 RIARDVEGLERPVTASMGVIELPRASDQLMGFDELYSRADQLLYNAKAAGRNR-TCFE 562


>gi|323495611|ref|ZP_08100684.1| diguanylate cyclase [Vibrio sinaloensis DSM 21326]
 gi|323319343|gb|EGA72281.1| diguanylate cyclase [Vibrio sinaloensis DSM 21326]
          Length = 259

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 16/201 (7%)

Query: 72  VIISITISLLLGYIS----GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE 127
           +I+S  I +L+ Y S     +++  L ++   ++ ++  D L+ L N   F   +G   E
Sbjct: 58  LIVSTIIPILISYPSFFLVWNLILRLHLAEREMANIANHDPLTQLPNRRCFDQFVGVLLE 117

Query: 128 KL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEE 179
           +        ++   DID+FKQ ND +GH  GD  +  ++ +L   + G P  V R GGEE
Sbjct: 118 RCRDSEQGGAVFIVDIDHFKQYNDYYGHQQGDVCLQAIARKLEKEIEGLPGMVARFGGEE 177

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSG---PSIHITISAGIAERCHK-EPIST 235
           F       S  +   + N L + + + QI   +      + +++  G +   H+ + I  
Sbjct: 178 FVVVLESISASDMQSIGNRLCRTVADEQIPHQASVLTEWVTVSVGGGYSHDIHETQCIDG 237

Query: 236 IIYRADQALYVAKKSGRNRVV 256
           +I  AD+ LY AK  GRN  V
Sbjct: 238 LISIADKNLYQAKSQGRNTFV 258


>gi|308051558|ref|YP_003915132.1| putative regulatory protein (GGDEF domain) [Legionella longbeachae
           NSW150]
 gi|288859983|emb|CBJ13973.1| putative regulatory protein (GGDEF domain) [Legionella longbeachae
           NSW150]
          Length = 513

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 11/161 (6%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL+N           ++    + ++++I+F D+D FK++ND+ GH +GDK++  + 
Sbjct: 348 DVLTGLVNRKQLDISFEHALTYAKRHQKQIAIMFLDLDSFKEVNDSLGHDIGDKLLIEIG 407

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHI 218
            +L         + R GG+EF  A    S  E  I +AN +   I  + I I +   I I
Sbjct: 408 KRLKSSLRETDIIARQGGDEFIIALTELSNIEQVINVANKILTSIAKA-ITIKT-HEISI 465

Query: 219 TISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           T S GI+    H + +  +I  AD+ALY  K +G+N  + F
Sbjct: 466 TASIGISLYPQHGDDLYALIKLADEALYEVKSTGKNNFLLF 506


>gi|21241415|ref|NP_640997.1| response regulator [Xanthomonas axonopodis pv. citri str. 306]
 gi|21106750|gb|AAM35533.1| response regulator [Xanthomonas axonopodis pv. citri str. 306]
          Length = 356

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 10/140 (7%)

Query: 120 SSLGSYNEKLSIVFF--DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
           S + S  E    V F  D+D  KQIND FGH  GD+V+  L D      G   +VGR GG
Sbjct: 211 SVIASQREGWPFVLFVLDMDNLKQINDRFGHLAGDRVLVRLVDSAYGWLGAQDWVGRWGG 270

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           +EF    + +SE +A +  N    ++E    +    P +H++  + +   C +   +T +
Sbjct: 271 DEF-LIGIHASEDDATLKLNQWLSMLERE--DAGDAP-LHVSAGSAV---CEQGLDATEL 323

Query: 238 Y-RADQALYVAKKSGRNRVV 256
           Y RAD A+Y AK SG  R+V
Sbjct: 324 YRRADAAMYRAKFSGGRRLV 343


>gi|89075695|ref|ZP_01162090.1| sensory box/GGDEF family protein [Photobacterium sp. SKA34]
 gi|89048558|gb|EAR54132.1| sensory box/GGDEF family protein [Photobacterium sp. SKA34]
          Length = 669

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 96/177 (54%), Gaps = 20/177 (11%)

Query: 99  RISQLSRIDCLSGLLN----HSAFISSLG-SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           R++ +++ D L+ L N    H   + +L    ++ ++++F D+D FK +ND+FGH +GDK
Sbjct: 494 RLAYIAQHDALTNLPNREFLHHYLVEALTLPRSDVMAVLFIDLDGFKFVNDSFGHDIGDK 553

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINIS 211
           V+  ++ +L++       V RL G+EF  A L        IL N   +II N    INI 
Sbjct: 554 VLQIVAKKLMMSVRKNDIVTRLAGDEF-VAVLNPVRGREPIL-NIGERIINNISQPINI- 610

Query: 212 SGPSIHITISAGIAERCHK-EP-----ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            G SI+I  S G    C+  EP     I ++++ AD A+Y +K  G+ R+  F+ ++
Sbjct: 611 KGNSINIGASIG----CYYIEPQDVTGIDSVLHCADMAMYQSKMQGKGRITEFNQMK 663


>gi|327190711|gb|EGE57793.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 764

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 92/183 (50%), Gaps = 13/183 (7%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVF 133
           L  +I+G  ++   + ++RI  ++  D L+GL N +     L +        N K+++ +
Sbjct: 315 LATHIAGIAIERKRV-HDRIHFMAHHDDLTGLPNRAFLKERLANILDQARRNNRKVTVAY 373

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK IND  GH  GD+V+  ++ ++         V RLGG+EF    +  S  +A 
Sbjct: 374 IDLDNFKDINDGRGHAAGDEVLKEIATRMANSVRASDMVVRLGGDEFLVVLVHQSSHDAG 433

Query: 194 ILANDLRKIIE--NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250
           I A  LR++ +  N  +   SG  I +T S G+A           ++  AD+A+Y AK+ 
Sbjct: 434 I-ARRLRELQKAINRPMRGESG-DIAVTASIGVAAFPVDGATAEELLANADRAMYRAKQL 491

Query: 251 GRN 253
           GRN
Sbjct: 492 GRN 494


>gi|325292490|ref|YP_004278354.1| diguanylate cyclase [Agrobacterium sp. H13-3]
 gi|325060343|gb|ADY64034.1| diguanylate cyclase [Agrobacterium sp. H13-3]
          Length = 372

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 77/158 (48%), Gaps = 9/158 (5%)

Query: 107 DCLSGLLNHSAFIS----SLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G  N  A  +     LG+    NE   +++ D+D FK IND FGHP GD+V+   +
Sbjct: 212 DPLTGFYNRKALEAIVDGQLGAALRENEAFGVLYLDLDGFKAINDTFGHPAGDRVLTAAA 271

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSGPSIHI 218
           D++     +   V R+GG+EFA      S  E    LA+ L                  +
Sbjct: 272 DRIRNSIRSEDTVVRMGGDEFAIFIPRPSRSEVMNGLADRLLAAFREPFDVDGQAVGARL 331

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +I   IA +   +  +T++   D+ALY AKKSGR+R V
Sbjct: 332 SIGGAIAPQAGAD-RATLLRSVDEALYQAKKSGRDRFV 368


>gi|260777610|ref|ZP_05886503.1| response regulator [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605623|gb|EEX31908.1| response regulator [Vibrio coralliilyticus ATCC BAA-450]
          Length = 310

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 11/174 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +   + +L+  D L+ + N           I+  G +   LS++  D+D+FK  ND
Sbjct: 132 ELAKANKELEKLASEDGLTKVKNRRYIDEKLKEMIAVHGRHGLPLSLILLDVDHFKLYND 191

Query: 145 NFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           N+GH  GDK +  ++  L  +F  +   VGR GGEEF      +  + A   A  ++  +
Sbjct: 192 NYGHIEGDKCLVEIAQSLTSLFSRSGEIVGRYGGEEFVVVLGHTDAEHAKKHAMRVQSTL 251

Query: 204 ENSQINIS-SGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           E   I    S  + ++T+S G+       KE    +  +AD+ LY +K  GRNR
Sbjct: 252 EALAIKHEYSSTAEYVTVSQGVCGFNPTGKETPDEMYSKADEGLYRSKSEGRNR 305


>gi|146284356|ref|YP_001174509.1| response regulator [Pseudomonas stutzeri A1501]
 gi|145572561|gb|ABP81667.1| response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Pseudomonas stutzeri A1501]
          Length = 641

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 86/170 (50%), Gaps = 14/170 (8%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +LS  D L+ L N   F       I         L+++  DID+FK+IND++GHP GD+ 
Sbjct: 460 RLSATDALTQLANRRRFDGVLDEEIRRARRSGSPLAVLLADIDHFKRINDSYGHPFGDEC 519

Query: 155 IAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  ++  L+           R GGEEF      S +++A +LA  +R+ IE  Q+     
Sbjct: 520 LRQVAAVLMAHCQRAGDLAARYGGEEFVVLLPASDQRQAVVLAERIRQDIERLQLRHGDL 579

Query: 214 PSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           P + +TIS G+A     C       ++  AD ALY AK +GRNRV+C  +
Sbjct: 580 P-VALTISLGVATLGSTCVS--AEALLAAADAALYAAKHAGRNRVLCAPE 626


>gi|46581582|ref|YP_012390.1| GGDEF domain-containing protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601258|ref|YP_965658.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris
           DP4]
 gi|46451005|gb|AAS97650.1| GGDEF domain protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|120561487|gb|ABM27231.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris
           DP4]
 gi|311235225|gb|ADP88079.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris
           RCH1]
          Length = 833

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
           ++I Q +  D L+GL NHS F   L    E+       L ++FFD+D FK+IND +GH  
Sbjct: 670 DKIRQQAMNDGLTGLFNHSHFHLILEREMERSRRTGRGLGLIFFDLDRFKRINDTYGHQA 729

Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD ++  ++  L  V    M F  R GG+EFA        +    LA  +R  +  S  N
Sbjct: 730 GDTILRRVAAALASVTRKGMDFPCRYGGDEFAVVTTEIEAEALQRLAMRIRNTVVESCRN 789

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK-KSGRNRV 255
                   I +S G+A    ++ I + + R D+A Y AK + G +R+
Sbjct: 790 A-------IDLSMGLAMLKPEDTIESFVARTDRASYRAKNQPGGDRL 829


>gi|54308026|ref|YP_129046.1| putative transcriptional regulator [Photobacterium profundum SS9]
 gi|46912452|emb|CAG19244.1| putative transcriptional regulator [Photobacterium profundum SS9]
          Length = 410

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 17/170 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +++ +++  D L+GL N   F +       +  +I   DID+FK++ND +GH  GD V+ 
Sbjct: 249 DKLYKMANQDTLTGLWNRRYFFNQQCDKGCQHRNIAMMDIDFFKKVNDTYGHDGGDAVLI 308

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS---- 212
            +S +L+        V R GGEEF   A G+            ++ +E  +++I +    
Sbjct: 309 HVS-RLIQARFEDAVVARFGGEEFCIQACGAFSH--------FQQRLEQLRVDIEALCIP 359

Query: 213 --GPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               +I++T+S G ++       I  ++  AD  LY AK+ GRN+VV  +
Sbjct: 360 YLDNTINVTMSIGAVSGAAQSHAIDDMLRTADDHLYYAKEHGRNQVVAHA 409


>gi|88860451|ref|ZP_01135089.1| putative orphan protein; putative conserved domain
           [Pseudoalteromonas tunicata D2]
 gi|88817649|gb|EAR27466.1| putative orphan protein; putative conserved domain
           [Pseudoalteromonas tunicata D2]
          Length = 963

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 15/169 (8%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           S  ++ QL+  D L+GL N + F         ++  G Y    ++ +FD+D FK+IND  
Sbjct: 525 SQRKMEQLAYFDTLTGLANRAFFRMQLRKSMALAERGHY--AFALFYFDLDEFKRINDTL 582

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN 205
           GH  GD+++  ++++L         V RLGG+EFA    G   + +AA +A  +++ I +
Sbjct: 583 GHDAGDQLLLQVANRLKQRLRAEDTVARLGGDEFAVLLSGIDDKSKAAEVAMIIQETI-S 641

Query: 206 SQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRN 253
             I + S   I I+ S GI       P    ++  AD A+Y AK  GRN
Sbjct: 642 QPIKLGSNEVI-ISASIGITMAPDDSPEEDQLLKHADLAMYEAKAKGRN 689


>gi|327439029|dbj|BAK15394.1| FOG: GGDEF domain [Solibacillus silvestris StLB046]
          Length = 567

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 96/199 (48%), Gaps = 19/199 (9%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------- 129
           + LL  Y + S+ K  + S     + S    L+GL N+      L    E++        
Sbjct: 370 VHLLSTYFAVSLEKAKYFS--AAVEKSETCALTGLYNYHYLDKMLVVEQERIKANPHLQF 427

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  DIDYFK+IND +GH  G+ ++   +  L         + R GGEEF       ++
Sbjct: 428 SLLMMDIDYFKRINDTYGHHAGNIILQNFAKLLENFVPKEAVLARYGGEEFVMLLPHRTK 487

Query: 190 QEAAILANDLRKIIENSQINISSGPS-------IHITISAGIAERCHK-EPISTIIYRAD 241
           +EA  L  ++R+ +E +   I S  +       + IT+S G++      +    ++  AD
Sbjct: 488 EEAVQLGEEIRQCVEVTPFLIESDLAEAGQKELVFITVSIGVSNVPDDTDETKGLLRNAD 547

Query: 242 QALYV-AKKSGRNRVVCFS 259
           +ALY+ AK++GRN+V  +S
Sbjct: 548 RALYIGAKQAGRNKVAEYS 566


>gi|292490653|ref|YP_003526092.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291579248|gb|ADE13705.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 908

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +++S  +  D L+GL+N   F       +  +   N    + + D+D FK +ND  GH  
Sbjct: 478 SQLSYQATHDVLTGLINRREFEVRLRQALDDVCQNNTHHVLCYLDLDQFKVVNDTCGHLA 537

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDK++  L+  L         +GRLGG+EF    LG    +A  +A  LR +I + + N 
Sbjct: 538 GDKLLRQLATLLQERIREADCLGRLGGDEFGVLLLGCHLDQAQGIAESLRILIRDFRFNW 597

Query: 211 SSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             G +  + +S G+         +  ++  AD A YVAK  GR+R+
Sbjct: 598 -KGKTFQLGVSIGLVPLARGSGGLEEVLSAADTACYVAKDQGRDRI 642


>gi|186471499|ref|YP_001862817.1| diguanylate cyclase [Burkholderia phymatum STM815]
 gi|184197808|gb|ACC75771.1| diguanylate cyclase [Burkholderia phymatum STM815]
          Length = 370

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 75/159 (47%), Gaps = 7/159 (4%)

Query: 104 SRIDCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           S+ D L+GL N   F      I S       +S++  D+D+FK+IND +GH  GD+V+  
Sbjct: 200 SQTDYLTGLGNRRWFFEEGARILSSSDAARSVSLLAVDLDHFKKINDRYGHETGDRVLKS 259

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            +D    V G    + R+GGEEFA          A      + K    +     +G  + 
Sbjct: 260 FADIARSVLGRHAILARIGGEEFAVLLPEHDSIRAKEAGEAVVKSFGETVTLGGNGVGVQ 319

Query: 218 ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            T+S G+A+       +  ++  ADQALY AK  G NR+
Sbjct: 320 ATVSIGLAQFGSGASSLGDLLGAADQALYRAKSLGGNRL 358


>gi|88857958|ref|ZP_01132600.1| hypothetical protein PTD2_11249 [Pseudoalteromonas tunicata D2]
 gi|88819575|gb|EAR29388.1| hypothetical protein PTD2_11249 [Pseudoalteromonas tunicata D2]
          Length = 298

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 22/218 (10%)

Query: 52  YIGLTPFYGLEYILVENLSLVI------ISITISLLLGYISGSILKELF--ISYNRISQL 103
           +IG T  + LE +  E L  +I      +++TI   L  +   +L  L   + ++R+ +L
Sbjct: 82  HIGQTVSFDLE-VEDERLGQLIYFTKQPVTVTIKEQLQKLHSILLYPLRNALLFHRVKKL 140

Query: 104 SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  D L+GL N S F  SL         ++    ++  D+D FK +ND  GH VGD ++ 
Sbjct: 141 ATKDSLTGLGNRSHFDDSLNRKLERCRRHHRSFGLMLLDLDNFKAVNDTHGHQVGDTILR 200

Query: 157 FLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +D L   V GT   + R GG+EFA          + ILA  ++  +    +       
Sbjct: 201 RFADLLSFSVRGTDT-IFRFGGDEFAILVDDDHHAVSNILAKRIQDAVHRDLL----LKQ 255

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             +T S G      K+    I  RAD+ALY AK +GR+
Sbjct: 256 HEVTTSIGFTLATSKDDHLQIFERADKALYKAKNNGRD 293


>gi|320199323|gb|EFW73914.1| hypothetical protein ECoL_03423 [Escherichia coli EC4100B]
          Length = 652

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 92/182 (50%), Gaps = 12/182 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYF 139
           SG+ + E   +  R+  L+  D ++GL N +A +  L  Y      N K+ +V+ D+D F
Sbjct: 210 SGTDITEERRAQERLRILANTDSITGLPNRNA-MQDLIDYAINHADNNKVGVVYLDLDNF 268

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+  
Sbjct: 269 KKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMAS-- 326

Query: 200 RKIIENSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +I+   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   
Sbjct: 327 -RILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCV 385

Query: 258 FS 259
           F+
Sbjct: 386 FT 387


>gi|85708867|ref|ZP_01039933.1| sensory box/GGDEF family protein [Erythrobacter sp. NAP1]
 gi|85690401|gb|EAQ30404.1| sensory box/GGDEF family protein [Erythrobacter sp. NAP1]
          Length = 696

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 14/191 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDY 138
           +GS + + +       +L++ D L+GL N           +++  +     +I+  D+D 
Sbjct: 106 TGSDITDEYHREEETERLAKYDSLTGLSNRHRMKHQIETTLTAFQAAKRNCAILMLDLDK 165

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND  GH  GD+++  +SD+L         +GRLGG+EF    +   + +  +L+  
Sbjct: 166 FKHVNDTLGHSAGDELLRQVSDRLQRSIEVECEIGRLGGDEF--QVMIPDQDDRGVLSEI 223

Query: 199 LRKIIE--NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             KII       ++  G +I I  S GIA   H    +  I+  AD ALY AK  GR + 
Sbjct: 224 AMKIITMLKQPYSLDEGRAI-IGCSVGIAIAPHDGVTMDEIVRNADLALYAAKNGGRGQY 282

Query: 256 VCFS-DIENNT 265
             FS ++EN  
Sbjct: 283 RFFSGELENEA 293


>gi|325293586|ref|YP_004279450.1| GGDEF/EAL transmembrane sensory box protein [Agrobacterium sp.
           H13-3]
 gi|325061439|gb|ADY65130.1| putative GGDEF/EAL transmembrane sensory box protein [Agrobacterium
           sp. H13-3]
          Length = 794

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 83/171 (48%), Gaps = 11/171 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  S  R  Q +  D L+GL N   F       I        +L+ +F D+D FK IND
Sbjct: 341 ELRQSEKRNRQQAISDHLTGLFNRQGFEAILDVQIRDADRNGSELACLFIDLDRFKAIND 400

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           N GH  GD V+   + ++  +  TP+    RLGG+EFA    G   +E A L  +    +
Sbjct: 401 NLGHAAGDAVLREFTLKIEPLL-TPLDSASRLGGDEFAILLAGDKVEERAQLFCERICTM 459

Query: 204 ENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
            ++   I  G SI ++ S G+A    H    S ++  AD A+Y  K++G+N
Sbjct: 460 LDTPFEI-EGNSIRLSASIGMAIYPLHAASASELLQNADMAMYTRKRTGKN 509


>gi|323497772|ref|ZP_08102786.1| c-di-GMP phosphodiesterase A-related protein [Vibrio sinaloensis
           DSM 21326]
 gi|323317119|gb|EGA70116.1| c-di-GMP phosphodiesterase A-related protein [Vibrio sinaloensis
           DSM 21326]
          Length = 684

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 123/250 (49%), Gaps = 25/250 (10%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLT-PFYGL-EYILV----ENLSLVIISITISLL 81
           ++ F +F +I + +++    +F FY  L+ P   L E++      +N +L   +      
Sbjct: 162 ILLFDLFRNILLTSIL----LFFFYQKLSKPLVTLIEWVRSLQNNKNGTLPPPTQYRDDE 217

Query: 82  LGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSI 131
           LG+++ +   + K+   +  +++QL+  D L+GL N S  +  LG         +E  ++
Sbjct: 218 LGHLAKTFHTLWKDREAAEAKLNQLAYYDSLTGLANRSLLLQLLGKEIDRANLKSESGAL 277

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
            + D+D FK IND+ GH +GD ++  +S ++           R+GG+EFA     +S  +
Sbjct: 278 FYLDLDRFKTINDSLGHTIGDHLLKAISMRIEAWVKDDYTAARIGGDEFAILLPHTSSDK 337

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKK 249
           A  LA  L  +I N   +I     ++ ++S GIA         I  ++ +AD ALY AK 
Sbjct: 338 ARELAQQLLALISNP-YSIDDH-QLYCSVSVGIAVFPSVGGTNID-VLRQADTALYRAKV 394

Query: 250 SGRNRVVCFS 259
            GRN+ + + 
Sbjct: 395 GGRNKYMFYE 404


>gi|167623283|ref|YP_001673577.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167353305|gb|ABZ75918.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 602

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 13/171 (7%)

Query: 99  RISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           R  +L+  D L+G  N  A        F+  +     + S+V FD+D FK IND +GH  
Sbjct: 417 RYRKLALTDRLTGAYNRGAGQDFAENEFVQ-VSMRQAEFSVVVFDLDLFKNINDGYGHAT 475

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD  +  +   +  +        R+GGEEFA     SSE+ A  +A   ++ I  + I+ 
Sbjct: 476 GDWTLKHVVSAVKPLIRDSDIFTRMGGEEFALFLPYSSEEVALGIAQRCKEAI--AAIDS 533

Query: 211 S-SGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             SG S  +T S G+ + +     +  ++ RAD ALY +K  GRNRV  ++
Sbjct: 534 KYSGHSFKVTASFGVSSNKLEDLSLDPLLKRADIALYTSKHLGRNRVTLYT 584


>gi|83644925|ref|YP_433360.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83632968|gb|ABC28935.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 528

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 91/187 (48%), Gaps = 17/187 (9%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFF 134
           LG     +L +L     ++ ++S  D L+GL N  A I  L             ++I+  
Sbjct: 322 LGRAFYQLLCQLQEQSEKLREMSFRDELTGLANRRAVIGYLDERWRLALEQKSDIAIIIC 381

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEF----AAAALGSSE 189
           D+DYFK  ND++GH +GD+V+  ++  L       +  V R GGEEF      A L   E
Sbjct: 382 DVDYFKDFNDHYGHDMGDEVLKEVASALRRGANKRLDLVARYGGEEFLIVLPGADLHIGE 441

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247
           Q A  L   ++++ E    +  S  + ++++S G+A       E     I  AD+ALY A
Sbjct: 442 QVAERL---VKRVYEMKLPHHFSQIAQYVSVSCGVAAGSPGEDETKEEWIRLADEALYKA 498

Query: 248 KKSGRNR 254
           K+SGRNR
Sbjct: 499 KESGRNR 505


>gi|323703123|ref|ZP_08114777.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531900|gb|EGB21785.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfotomaculum nigrificans DSM 574]
          Length = 547

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 7/164 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQINDNFGHPVGD 152
           ++  L+  D L+ + N  +   +L    EK       +++  DID FK +ND  GH  GD
Sbjct: 110 KLQYLATHDSLTNIPNRYSLEEALRLAVEKAKTGLESALLLIDIDNFKLVNDTMGHTAGD 169

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           K++   ++ L        FV R GG+EFA    G  + E   +A+ +R  +  +++ + S
Sbjct: 170 KLLVQFTEILQKNIREGDFVARFGGDEFAIIIEGIEKNEVLDMADRIRNAVYENEVIVGS 229

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              ++++IS GI           I+ +AD ALY AK+ GRNRV 
Sbjct: 230 -TRLNLSISIGIVLIDGTLDYQKILSKADIALYKAKEEGRNRVA 272


>gi|326314957|ref|YP_004232629.1| diguanylate cyclase with GAF sensor [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323371793|gb|ADX44062.1| diguanylate cyclase with GAF sensor [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 351

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 7/111 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNE-KLSIVFFDIDYFKQ 141
           ++ EL  +  R+++ +  D L+GL N  A I SL      G     ++ + F D+D FK 
Sbjct: 158 LIGELVCANERLARYAATDALTGLQNRRALIESLTRLLSQGRRRHVEVLVAFIDLDRFKS 217

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           IND  GH VGD+ +  ++ +L  V      V R+GG+EF  AALG+   +A
Sbjct: 218 INDRHGHEVGDQFLVAIAQRLRAVLREEDVVARMGGDEFVVAALGTQAGDA 268


>gi|270158623|ref|ZP_06187280.1| sensory box protein/GGDEF domain/EAL domain-containing protein
           [Legionella longbeachae D-4968]
 gi|289166555|ref|YP_003456693.1| regulatory protein (GGDEF, EAL, PAS and PAC domains) [Legionella
           longbeachae NSW150]
 gi|269990648|gb|EEZ96902.1| sensory box protein/GGDEF domain/EAL domain-containing protein
           [Legionella longbeachae D-4968]
 gi|288859728|emb|CBJ13701.1| putative regulatory protein (GGDEF, EAL, PAS and PAC domains)
           [Legionella longbeachae NSW150]
          Length = 974

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 107/227 (47%), Gaps = 32/227 (14%)

Query: 51  FYIGLTPFYGLE--YILVENLSLVIISITISLLLGYI----SGSIL------KELFISYN 98
            Y G  PFY +E  YI  +        IT  LL+G I     G+ L      +++     
Sbjct: 482 LYDGEIPFYQMEKRYIRKDK------KITWILLIGAIIRNEQGTPLYYIGQFQDINDKKE 535

Query: 99  RISQLS---RIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
           +  +LS    ID L+GL+N +   +SL         + ++ ++ F D+D FKQ+ND+ GH
Sbjct: 536 KEKELSIKAYIDTLTGLVNRNQLENSLNLTILSALRHQQQFAVFFIDLDNFKQVNDSLGH 595

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQ 207
             GD+++  +SD+            RLGG+EF        S + AA+ A ++  I+    
Sbjct: 596 DAGDELLKVISDRFRNSIRKTDIAARLGGDEFILVLHDIKSPEIAAVFAENILNILIKP- 654

Query: 208 INISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
           I I     + +T S GI+      E   ++I  AD ALY AK+ GRN
Sbjct: 655 ITIKEH-ELLVTASIGISFYPADGEDYHSLINSADLALYKAKEEGRN 700


>gi|270160390|ref|ZP_06189039.1| sensory box/GGDEF family protein [Legionella longbeachae D-4968]
 gi|269987100|gb|EEZ93362.1| sensory box/GGDEF family protein [Legionella longbeachae D-4968]
          Length = 513

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 11/161 (6%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL+N           ++    + ++++I+F D+D FK++ND+ GH +GDK++  + 
Sbjct: 348 DVLTGLVNRKQLDISFEHALTYAKRHQKQIAIMFLDLDSFKEVNDSLGHDIGDKLLIEIG 407

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHI 218
            +L         + R GG+EF  A    S  E  I +AN +   I  + I I +   I I
Sbjct: 408 KRLKPSLRETDIIARQGGDEFIIALTELSNIEQVINVANKILTSIAKA-ITIKTH-EISI 465

Query: 219 TISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           T S GI+    H + +  +I  AD+ALY  K +G+N  + F
Sbjct: 466 TASIGISLYPQHGDDLYALIKLADEALYEVKSTGKNNFLLF 506


>gi|217970377|ref|YP_002355611.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
 gi|217507704|gb|ACK54715.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
          Length = 884

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 16/175 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+GL N    +  L       +       ++F D+D FK +ND  GH  GD
Sbjct: 443 VRKLAYFDALTGLPNRRLLMERLERAQASCARQGTVGALLFIDLDNFKAVNDTVGHQEGD 502

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALG-----SSEQEAAILANDLRKIIEN 205
           +++  ++  LV        V RLGG+EF      LG     ++EQ AA+ +  L  + + 
Sbjct: 503 RLLVQVAAILVRCVRKDDTVARLGGDEFIVMLEELGGEGREAAEQAAAVGSKILAALNQR 562

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            Q+  SS     ++I   +      EP+   + RAD A+Y AK  GRN  VCF D
Sbjct: 563 FQLG-SSEHRTSVSIGVSLFGELADEPVDEPLRRADMAMYRAKLGGRN-AVCFFD 615


>gi|237808743|ref|YP_002893183.1| diguanylate cyclase with PAS/PAC sensor and hemerythrin-like
           metal-binding domain [Tolumonas auensis DSM 9187]
 gi|237501004|gb|ACQ93597.1| diguanylate cyclase with PAS/PAC sensor and hemerythrin-like
           metal-binding domain [Tolumonas auensis DSM 9187]
          Length = 762

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 20/190 (10%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFF 134
           +G    + LK  F++Y+        D L+GL N   F       IS+     ++  ++F 
Sbjct: 442 VGERKETELKLRFMAYH--------DGLTGLPNRQLFFDRLARSISNAKRNKKQFGLLFI 493

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEA 192
           D+D FKQ+ND +GH  GD  +  ++D+ V        V R+ G+EF      LG++  EA
Sbjct: 494 DLDGFKQVNDRYGHEAGDITLQTVADRFVSSLRENDTVARMAGDEFVVILNDLGNA-HEA 552

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSG 251
             +A  L   I  + I I+ G   H+  S GIA    +   + T++  AD A+Y  KK+G
Sbjct: 553 GYVARKLLDAIAPA-IVIADGMECHVGASIGIAIFPDNGTEMDTLLVAADAAMYQCKKNG 611

Query: 252 RNRVVCFSDI 261
           +N  +   DI
Sbjct: 612 KNNYMFSGDI 621


>gi|124515615|gb|EAY57125.1| Diguanylate cyclase/phosphodiesterase [Leptospirillum rubarum]
          Length = 719

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 95/214 (44%), Gaps = 11/214 (5%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           YG+   L      VI SI +S+++  I  S  K +  + + +   S  D L+GL N   F
Sbjct: 253 YGVTRELTPQEQSVIQSI-LSVMVMVIGSS--KVISRTLSELEYYSTHDPLTGLHNRRYF 309

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              +G        +  K  ++  D+D FK +ND++GH  GD+V+  L   +         
Sbjct: 310 NEMIGYEIQRSERHGHKFCLLMIDLDNFKDVNDSYGHLDGDRVLNQLGKIVTGTVRKGDI 369

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHK 230
           V R GG+EF      +S      LA  +R+ I+      +   S H+T+S GI A     
Sbjct: 370 VCRFGGDEFVVLLSETSLSGGCTLAETVREAIQTWSFGTTDRGSFHVTVSVGIVAYPQDG 429

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             I  ++   D  LY AK+ GRN V    D+  +
Sbjct: 430 NQIEDLLAGLDLVLYRAKERGRNTVASSRDLRTD 463


>gi|71907306|ref|YP_284893.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71846927|gb|AAZ46423.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 996

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 7/166 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           RI  L+ +D L+ L N   F   +G +     K +++  D+D   ++ND FGH  GD ++
Sbjct: 568 RIESLTHVDQLTELPNRQGFSRIMGEWLAAARKGALILIDLDQLSRVNDAFGHAAGDAML 627

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGP 214
             +S +L  +     F+GRLGG++F    A G     A ++A  L   I  +Q  +  G 
Sbjct: 628 RRISVRLRKILRDGDFLGRLGGDQFGVLLAQGIRPVVAEVVARKLLDAI--AQPVMIEGS 685

Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I  T SAGI         +++++  AD AL+ AK SG+N    FS
Sbjct: 686 DIVTTASAGICLLGSDGHDVASLLRNADNALHHAKDSGQNAFRFFS 731


>gi|28379379|ref|NP_786271.1| diguanylate cyclase/phosphodiesterase domain-containing protein
           [Lactobacillus plantarum WCFS1]
 gi|254557515|ref|YP_003063932.1| diguanylate cyclase/phosphodiesterase domain-containing protein
           [Lactobacillus plantarum JDM1]
 gi|300768764|ref|ZP_07078660.1| diguanylate cyclase/phosphodiesterase domain 1 containing protein
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
 gi|308181592|ref|YP_003925720.1| diguanylate cyclase/phosphodiesterase domain-containing protein
           [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|28272218|emb|CAD65126.1| protein containing diguanylate cyclase/phosphodiesterase domain 1
           (GGDEF) [Lactobacillus plantarum WCFS1]
 gi|254046442|gb|ACT63235.1| diguanylate cyclase/phosphodiesterase domain-containing protein
           [Lactobacillus plantarum JDM1]
 gi|300493721|gb|EFK28893.1| diguanylate cyclase/phosphodiesterase domain 1 containing protein
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
 gi|308047083|gb|ADN99626.1| diguanylate cyclase/phosphodiesterase domain-containing protein
           [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 376

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 18/173 (10%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R++Q +  D L+   N +A+   +          N  LS++ FDID+FK +ND +GH  G
Sbjct: 207 RLAQFASHDALTETENFAAYTEHIKYLFDDSAKNNLNLSMMMFDIDHFKHVNDTYGHLAG 266

Query: 152 DKVIAFLSDQLVVVFGT---PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NS 206
           D+V+  ++  +  V       + + R GGEEF     G       ++   +R++ E  N 
Sbjct: 267 DRVLQEVAATVTTVLAANDEKVKLYRTGGEEFNVLFPGYDLASTKVI---VRQVFEAVNH 323

Query: 207 QINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +       I+++IS G++   +    PI  +  R DQ LY +K+ GR RV  
Sbjct: 324 LVVKYEDEEINVSISVGVSTLHQADGSPID-LYNRVDQNLYFSKRHGRMRVTV 375


>gi|328886877|emb|CCA60116.1| Sensory box or GGDEF family protein [Streptomyces venezuelae ATCC
           10712]
          Length = 721

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 32/167 (19%)

Query: 107 DCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GL N + F   L        N +  + + D+D FK IND+ GH  GD+++  ++D+
Sbjct: 293 DALTGLPNRTLFFERLEKALAPGENARFGLCYLDLDGFKVINDSLGHSTGDRLLVEVADR 352

Query: 162 LV-VVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILAN------------DLRKIIENSQ 207
           L   V G+   V RLGG+EF A   G++ EQ+   LA+            D R++     
Sbjct: 353 LQSCVTGSGEMVARLGGDEFVALTTGAAGEQDVTELADRILAALATPLRIDGRELTVRGS 412

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + +  GP+          ER   E    ++  AD  +Y AK +G NR
Sbjct: 413 LGVVEGPA---------GERTPAE----VLRSADITMYRAKSAGGNR 446


>gi|310816119|ref|YP_003964083.1| sensory box/GGDEF family protein [Ketogulonicigenium vulgare Y25]
 gi|308754854|gb|ADO42783.1| sensory box/GGDEF family protein [Ketogulonicigenium vulgare Y25]
          Length = 768

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 10/178 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFIS------SLGSYN-EKLSIVFFDIDYFKQINDNFGH 148
           S  RI+ L++ D L+ L N +  +        + + N E+++++  D+D FK +ND FGH
Sbjct: 338 SQRRITHLAKHDSLTSLPNRATAMQAMAQAMEIAALNGEQVAVLALDLDRFKAVNDIFGH 397

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQ 207
             GD+V+  +SD L         V RLGG+EF     G+ + + A+ LA  +  +    Q
Sbjct: 398 QEGDRVLCQVSDYLRAAVRATDLVARLGGDEFLIIQTGAIQPQGAVALAERIIAMFARDQ 457

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS-DIENN 264
                  ++  +I   +      +P S++ + AD ALY AK  GR  +  +  D++N 
Sbjct: 458 TEAKKLRTVGTSIGIAVFPDDAADP-SSLHHAADLALYRAKAIGRGNICSYDVDMDNE 514


>gi|304310543|ref|YP_003810141.1| hypothetical protein HDN1F_09010 [gamma proteobacterium HdN1]
 gi|301796276|emb|CBL44484.1| hypothetical protein HDN1F_09010 [gamma proteobacterium HdN1]
          Length = 700

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 15/175 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDK 153
           + +LS  D L+ L N S F+  L + N+ L+      + +  +D F  +N    +  GD+
Sbjct: 249 VERLSNYDTLTELPNRSLFLKRLDALNQPLTSDHYSALFYIGLDDFSSVNLLHSYRTGDR 308

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  L+D+L         + R GG++F  A  G+SE +A  LA+ L  +++       SG
Sbjct: 309 VLTTLADRLRKSTPDQALLMRAGGDQFCIAIRGTSEPQARELAHALLALVQQP----FSG 364

Query: 214 PSIHITISA--GIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            S  +T+SA  G+A   R  K P   ++ +A++A+ + K +G N +  +S+IEN+
Sbjct: 365 ESTPLTLSATVGVAFFPRDAKAP-ELLLKKAEEAMRLGKSAGGNSIQFYSEIENH 418


>gi|261251215|ref|ZP_05943789.1| response regulator [Vibrio orientalis CIP 102891]
 gi|260938088|gb|EEX94076.1| response regulator [Vibrio orientalis CIP 102891]
          Length = 318

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 87/178 (48%), Gaps = 21/178 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
             + QL++ D L+ + N       L       G +   LS++  D+D FK  NDN+GH  
Sbjct: 145 QELEQLAQEDGLTKVKNRRFVDQKLQEMILLHGRHELPLSVILLDVDKFKLFNDNYGHIE 204

Query: 151 GDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GDK +  L++ L  +F  +   VGR GGEEF    LG ++QE AI   D  +I   S + 
Sbjct: 205 GDKCLILLAELLTKLFVRSGEVVGRYGGEEF-VVILGYTDQEKAI--KDASRI--QSALT 259

Query: 210 ISSGPSIH------ITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +S P  +      +T+S G+       KE I  I    D+ LY AK +GRN+ +  +
Sbjct: 260 EASIPHEYSEVADIVTVSQGVFTTIPSGKESIEQIYELVDKQLYQAKLAGRNQYISVN 317


>gi|67644042|ref|ZP_00442785.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia mallei GB8 horse 4]
 gi|238525526|gb|EEP88954.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia mallei GB8 horse 4]
          Length = 583

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 16/204 (7%)

Query: 62  EYILVENLSLVIIS-ITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +Y    N+ L++   IT+++L   G  +G I K L      ++QL+  D L+GL N  A 
Sbjct: 89  DYHHTRNVYLLMTGFITLAMLAFFGVATGLIGK-LLGREREMTQLAEFDLLTGLANRYAT 147

Query: 119 ISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           + SL       S   +L+I+F D+D FK +ND  GH  GD V+   + +L         +
Sbjct: 148 LRSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVANEGAL 207

Query: 173 GRLGGEEFAAAALGSS-EQEAAILANDL-RKIIENSQINISSGPSIHITISAGIA-ERCH 229
            R+GG+EF     G + E+ A  LA  + R   E   +    G S  +  S GIA     
Sbjct: 208 ARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPFDVR---GSSFVLHASIGIALHSVE 264

Query: 230 KEPISTIIYRADQALYVAKKSGRN 253
            E    ++ +AD A+Y AK +G+N
Sbjct: 265 NESEIDLLKKADLAMYSAKDAGKN 288


>gi|332098146|gb|EGJ03119.1| protein gmr domain protein [Shigella dysenteriae 155-74]
          Length = 404

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 176 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 235

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN--- 197
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 236 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRIL 295

Query: 198 -DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR       I + +  S+ I++S       H    +TII  AD A+Y AK+ GR +  
Sbjct: 296 TRLRLPFRIGLIEVYTSCSVGISLSPE-----HGSDSATIIRHADTAMYTAKEGGRGQFC 350

Query: 257 CFS 259
            F+
Sbjct: 351 VFT 353


>gi|317497932|ref|ZP_07956240.1| GGDEF domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316894765|gb|EFV16939.1| GGDEF domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 488

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 98/200 (49%), Gaps = 23/200 (11%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQL---SRIDCLSGLLNHSA---FISSLGS 124
           +++  + ++LL+ YI       ++ ++ R  +L   ++ D L+GL N          L S
Sbjct: 298 MIVFIVLVTLLILYI-------VYENHTRNKELLKYAQTDALTGLYNKETTEQLTDELLS 350

Query: 125 YNEKLSIVFF--DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
            +E     F   D+D FKQIND +GH VGD V+      L   F     +GR+GG+EF  
Sbjct: 351 EDENKYHAFLILDVDCFKQINDIYGHAVGDIVLQKFGKLLKGTFREGDILGRIGGDEFGV 410

Query: 183 AALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHITISAGIAER---CHKEPISTIIY 238
                  ++ A+  A +L    +  +I+   G +I I+I    A +   C+ +    +  
Sbjct: 411 IMKNIQTKDIAMKKAEELLAKTQAYKIDELKGNNISISIGISTAPQDGDCYMD----LYK 466

Query: 239 RADQALYVAKKSGRNRVVCF 258
           RADQALY AK+SG+ RV  +
Sbjct: 467 RADQALYQAKRSGKARVCNY 486


>gi|302560492|ref|ZP_07312834.1| sensory box/GGDEF family protein [Streptomyces griseoflavus Tu4000]
 gi|302478110|gb|EFL41203.1| sensory box/GGDEF family protein [Streptomyces griseoflavus Tu4000]
          Length = 630

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 100/216 (46%), Gaps = 29/216 (13%)

Query: 74  ISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLG----- 123
           + +T+S L     G +L    IS  R     +      D ++ L N + F   L      
Sbjct: 141 VRVTVSPLPADDGGVLLSVADISDRRELRAELRHARMHDPVTRLPNRALFFERLTAALDA 200

Query: 124 -SYNE----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV--------VVFGTPM 170
            SY E    ++ + + D+D FK +ND  GH VGD+++A ++++L            GTP+
Sbjct: 201 ESYEESGTGRIGLCYLDLDGFKAVNDTLGHRVGDRLLAAVAERLTRCAEAAGRTRTGTPL 260

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCH 229
            V RLGG+EFA     S+  E   LA+    +++  Q     SG  + ++ S G+ ER  
Sbjct: 261 -VARLGGDEFALLVEDSTGTEQ--LADLAESLLDTIQAPFDLSGRRLSVSASIGVVERHA 317

Query: 230 KEPISTIIYR-ADQALYVAKKSGRNRVVCFSDIENN 264
                T + + AD  LY AK  G++R   F D E N
Sbjct: 318 AGTTPTALMQAADTTLYWAKADGKSRWTLF-DPERN 352


>gi|206901583|ref|YP_002251461.1| ggdef domain protein [Dictyoglomus thermophilum H-6-12]
 gi|206740686|gb|ACI19744.1| ggdef domain protein [Dictyoglomus thermophilum H-6-12]
          Length = 559

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 84/171 (49%), Gaps = 14/171 (8%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y    +LS +D L+G+ N       L +       YN  LS++F DID+FK IND +GH 
Sbjct: 387 YEHTEKLSYVDPLTGVYNKRKIDEILENEVNRALRYNRPLSLIFIDIDHFKNINDTYGHI 446

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND---LRKIIENS 206
           +GD  +  L+  L+        +GR GGEEF    L  ++ E+A    +   +R  IE  
Sbjct: 447 IGDSFLKELALFLLRNTRNIDTIGRFGGEEFVCI-LPETDLESAYKVGEKLRVRWNIERH 505

Query: 207 QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            I I     I  T+S GI+    H +    ++  AD ALY AKK  RN+ +
Sbjct: 506 IIPIKIDEKIG-TLSMGISNLPTHSKNARELLILADNALYKAKKE-RNKTL 554


>gi|167585855|ref|ZP_02378243.1| diguanylate cyclase/phosphodiesterase [Burkholderia ubonensis Bu]
          Length = 779

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 99/202 (49%), Gaps = 12/202 (5%)

Query: 62  EYILVENLSLVIIS-ITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +Y    N+ L++ S IT+++L   G  +G I K L      ++QL+  D L+GL N  A 
Sbjct: 291 DYNHTRNVYLLMTSFITLAMLAFFGVATGLIGK-LLGREREMTQLAEYDLLTGLANRYAT 349

Query: 119 IS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           +       S+ S   +L ++F D+D FK +ND  GH  GD V+   + +L    G    +
Sbjct: 350 LRGLRNDVSMPSSLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTASRLADAVGDEGAL 409

Query: 173 GRLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
            R+GG+EF     G   E+ A  LA  + ++         S   +H +I   +    ++ 
Sbjct: 410 SRIGGDEFVVVMKGDDVERRAVRLAEAIIRMFGEPFDVRGSSFVLHASIGIALHTVANES 469

Query: 232 PISTIIYRADQALYVAKKSGRN 253
            I  ++ +AD A+Y AK +G+N
Sbjct: 470 EID-LLKKADLAMYSAKDAGKN 490


>gi|163845119|ref|YP_001622774.1| diguanylate cyclase [Brucella suis ATCC 23445]
 gi|163675842|gb|ABY39952.1| diguanylate cyclase (GGDEF) domain [Brucella suis ATCC 23445]
          Length = 373

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 78/164 (47%), Gaps = 9/164 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF--ISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGD 152
           N + +    D L+GLLN       + L  +  +     ++  DID+FK IND +GHPVGD
Sbjct: 194 NELQRERDSDPLTGLLNRRGLERQADLRLHTPQCLSYGVITADIDHFKAINDAYGHPVGD 253

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-IS 211
           +V+   +  L         VGR+GGEEF     G++E E   L N L  ++     + + 
Sbjct: 254 QVLVEFARILSSASKDHAIVGRVGGEEFVLLVSGTAE-ECEALGNRLCGLVARHAFSKLP 312

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +G    +T S GIA     E       RAD AL   K  GRNRV
Sbjct: 313 AGQK--VTSSFGIAMVRSGETFWETAARADLALMRVKNLGRNRV 354


>gi|167908702|ref|ZP_02495907.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei NCTC 13177]
          Length = 772

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 16/204 (7%)

Query: 62  EYILVENLSLVIIS-ITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +Y    N+ L++   IT+++L   G  +G I K L      ++QL+  D L+GL N  A 
Sbjct: 278 DYHHTRNVYLLMTGFITLAMLAFFGVATGLIGK-LLGREREMTQLAEFDLLTGLANRYAT 336

Query: 119 ISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           + SL       S   +L+I+F D+D FK +ND  GH  GD V+   + +L         +
Sbjct: 337 LRSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVANEGAL 396

Query: 173 GRLGGEEFAAAALGSS-EQEAAILANDL-RKIIENSQINISSGPSIHITISAGIA-ERCH 229
            R+GG+EF     G + E+ A  LA  + R   E   +    G S  +  S GIA     
Sbjct: 397 ARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPFDVR---GSSFVLHASIGIALHSVE 453

Query: 230 KEPISTIIYRADQALYVAKKSGRN 253
            E    ++ +AD A+Y AK +G+N
Sbjct: 454 NESEIDLLKKADLAMYSAKDAGKN 477


>gi|167562036|ref|ZP_02354952.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia oklahomensis EO147]
 gi|167569294|ref|ZP_02362168.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia oklahomensis C6786]
          Length = 786

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 99/204 (48%), Gaps = 16/204 (7%)

Query: 62  EYILVENLSLVIIS-ITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +Y    N+ L++ S IT+++L   G  +G I K L      ++QL+  D L+GL N  A 
Sbjct: 292 DYHHTRNVYLLMTSFITLAMLAFFGVATGLIGK-LLGREREMTQLAEFDLLTGLANRYAT 350

Query: 119 ISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           + SL       S   +L+I+F D+D FK +ND  GH  GD V+   + +L         +
Sbjct: 351 LRSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVMNEGAL 410

Query: 173 GRLGGEEFAAAALGSS-EQEAAILANDL-RKIIENSQINISSGPSIHITISAGIA-ERCH 229
            R+GG+EF     G   E+ A  LA  + R   E   +    G S  +  S GIA     
Sbjct: 411 ARIGGDEFVVVVKGDDVERRAERLAEAIVRMFAEPFDVR---GSSFVLHASIGIALHSVE 467

Query: 230 KEPISTIIYRADQALYVAKKSGRN 253
            E    ++ +AD A+Y AK +G+N
Sbjct: 468 NESEIDLLKKADLAMYSAKDAGKN 491


>gi|89096893|ref|ZP_01169784.1| hypothetical protein B14911_18350 [Bacillus sp. NRRL B-14911]
 gi|89088273|gb|EAR67383.1| hypothetical protein B14911_18350 [Bacillus sp. NRRL B-14911]
          Length = 744

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 9/153 (5%)

Query: 107 DCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+GL N +  +  L     S  EK +++F D+D FK IND  GH  GD ++     +L
Sbjct: 326 DTLTGLPNRNEIMKQLQGILNSGKEKAAVLFLDLDRFKIINDTKGHSTGDLLLKKAGIRL 385

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITIS 221
               G+   V R GG+EF        E+E   +    R IIE  ++  I  G   +IT S
Sbjct: 386 EDTVGSLGLVARQGGDEFIILF---EEKEKQQIEGAARAIIEQFNKPFILEGEEFYITPS 442

Query: 222 AGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
            GI+    H     T+I  AD A+Y+AK+ G+N
Sbjct: 443 IGISLYPEHGTDQETLIKHADTAMYLAKERGKN 475


>gi|89092428|ref|ZP_01165382.1| sensory box/GGDEF domain protein [Oceanospirillum sp. MED92]
 gi|89083516|gb|EAR62734.1| sensory box/GGDEF domain protein [Oceanospirillum sp. MED92]
          Length = 301

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 17/173 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            +  +L+  D L+G+ N       L         +   +S +  D+D FK IND +GH  
Sbjct: 134 KKFKRLATYDDLTGIYNRREGRKQLKQLCKDAVRHKRPISAILLDLDNFKVINDTYGHDT 193

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA----NDLRKIIENS 206
           GD V+   +  L        FV R GGEEF      +++Q+A  +     ++LRK+    
Sbjct: 194 GDMVLKKAAQSLDRYSRAHDFVCRYGGEEFMIILPETNKQDAVKIGERYLDELRKL---- 249

Query: 207 QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I I++   + IT S G+ E          ++ +AD+ALY AK +G+N+ VCF
Sbjct: 250 EIQITNDEKLKITASIGVGELDAEFTDRELMLKQADEALYRAKANGKNQ-VCF 301


>gi|87120609|ref|ZP_01076503.1| regulatory component of sensory transduction system [Marinomonas
           sp. MED121]
 gi|86164252|gb|EAQ65523.1| regulatory component of sensory transduction system [Marinomonas
           sp. MED121]
          Length = 357

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 127/279 (45%), Gaps = 37/279 (13%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGL--------- 55
           L D  +I L    NL  F+P  F+ Y+ I  S   A +  +  I L + GL         
Sbjct: 73  LVDMFAIGLM--ANLVYFNPVIFLPYY-IANS---AAIYAMKGISLVFKGLLAAIIGALI 126

Query: 56  -TPFYGLEYILVENLSLVIISITISLL-------LGYISGSILKELFISYNRISQLSRID 107
             P +G EY +  NL  +I S     L       L ++ G IL +   +  +    +  D
Sbjct: 127 SIPIFGFEYRMDMNLYALIPSFLYLFLATHYVSYLSHLRGVILNK---AKAKAEVQANSD 183

Query: 108 CLSGLLNHSAFISSL-----GSYN--EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            ++ + N   F   L      SY   + LS++  DID+FK  ND +GHP+GD  +  ++ 
Sbjct: 184 SITKIANRRYFDRKLEEQWWRSYQSQQALSMLAIDIDFFKNYNDFYGHPLGDDCLNLVAQ 243

Query: 161 QLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHI 218
            +   V  +   V R GGEEF      ++   A ++A  +   IE  QI +  S  S  +
Sbjct: 244 TIAGSVTRSSDLVARTGGEEFNIILPNTNLDGAYMVAKKVLAAIEALQIEHRGSDVSNVV 303

Query: 219 TISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255
           T+S G++        S+  ++  ADQALY AK+ GRNR+
Sbjct: 304 TVSIGVSSIIPVASFSSRGLMLAADQALYQAKREGRNRI 342


>gi|333004607|gb|EGK24131.1| protein gmr [Shigella flexneri VA-6]
          Length = 415

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 190 SGTDITEERRTQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 249

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN--- 197
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 250 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRIL 309

Query: 198 -DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR       I + +  S+ I++S       H    +TII  AD A+Y AK+ GR +  
Sbjct: 310 TRLRLPFRIGLIEVYTSCSVGISLSPE-----HGSDSATIIRHADTAMYTAKEGGRGQFC 364

Query: 257 CFS 259
            F+
Sbjct: 365 VFT 367


>gi|326390445|ref|ZP_08212003.1| diguanylate cyclase [Thermoanaerobacter ethanolicus JW 200]
 gi|325993563|gb|EGD51997.1| diguanylate cyclase [Thermoanaerobacter ethanolicus JW 200]
          Length = 143

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 63/124 (50%), Gaps = 4/124 (3%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++ FD+D+FK +ND FGH  GD V+  ++D +           R GGEEF      +  
Sbjct: 19  SLIMFDLDHFKNVNDRFGHAAGDMVLKSVTDTVKKRIRKTDCFARWGGEEFIILLPETFL 78

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
             A  LA +LRK I  S I +       +T S G+ E    + I T++ R D  LY AK 
Sbjct: 79  NNAVDLAEELRKHI--STIELQGIGD--VTASFGVTEYRDTDTIDTVLLRVDNMLYEAKG 134

Query: 250 SGRN 253
           +GRN
Sbjct: 135 TGRN 138


>gi|262403600|ref|ZP_06080158.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio sp. RC586]
 gi|262350104|gb|EEY99239.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio sp. RC586]
          Length = 412

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 23/170 (13%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+ +    A    L     K ++   D+D+FK+ ND +GH  GD V+  ++ +L  + 
Sbjct: 241 DPLTQIPGRQALDQDLKHIGRKFTLAMLDVDHFKKFNDTYGHDTGDDVLKLVASRLRQIE 300

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPS-------- 215
           G    V R GGEEF+    G    +      DLR+ I + ++   N +  P         
Sbjct: 301 GKAR-VYRYGGEEFSIIYRGKLANDVLPFIEDLRQDIASYELVIRNSNKRPKNDLEGAKK 359

Query: 216 ---------IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
                    + IT+S G+ +   H++P +  +  AD ALY AK++GRN V
Sbjct: 360 RTCKTNSDIVTITVSIGVCDSELHRKP-NEALKAADAALYKAKQAGRNCV 408


>gi|291087979|ref|ZP_06348042.2| sensory box/GGDEF domain protein [Clostridium sp. M62/1]
 gi|291073348|gb|EFE10712.1| sensory box/GGDEF domain protein [Clostridium sp. M62/1]
          Length = 325

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 84/159 (52%), Gaps = 9/159 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF--ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            R++ L++ D L+GL+N+  F  I   G   EK  +   D+D FK+IND +GH  G++V+
Sbjct: 168 GRMALLAQRDGLTGLINYHTFEEIWKKGDRTEKW-LFIVDLDDFKKINDTYGHMEGNQVL 226

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGP 214
             ++  L  V  T   V R+GG+EF     G SS + AA LA  +   I   +    + P
Sbjct: 227 KTIAGLLNRVVRTHDLVCRMGGDEFLLLCGGISSMKGAARLAERIVDCIAAHRTE-KAWP 285

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           S    IS G  E    E + + I RAD+ALY  K++ +N
Sbjct: 286 S----ISVGGTEILPDEKLESAIERADKALYSVKRTTKN 320


>gi|254516751|ref|ZP_05128810.1| response regulator [gamma proteobacterium NOR5-3]
 gi|219675174|gb|EED31541.1| response regulator [gamma proteobacterium NOR5-3]
          Length = 968

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 85/184 (46%), Gaps = 12/184 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           +EL  +  R+   SRID L+G+ N       L +           +SI+  DID FKQ N
Sbjct: 778 RELREALVRVEANSRIDSLTGVANRRHLEEQLNATWSMARRSGAPVSILMLDIDLFKQYN 837

Query: 144 DNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D  GH  GD  +  ++  +   +      + R GGEEF      +  + A   AN +   
Sbjct: 838 DTLGHSAGDDCLRLIAQAIKSKLLREHDMLARYGGEEFVVLLYDTDAKGAERAANRILDC 897

Query: 203 IENSQI-NISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFS 259
           +    + + +S  S H+TIS G A    KE      +I  AD+ALY AK  GRNR  C S
Sbjct: 898 VRVLDLPHPASDVSEHVTISIGCATLGEKERDDPHRLIDLADKALYQAKAQGRNR-ACSS 956

Query: 260 DIEN 263
           + E+
Sbjct: 957 NQES 960


>gi|323144624|ref|ZP_08079212.1| diguanylate cyclase (GGDEF) domain [Succinatimonas hippei YIT
           12066]
 gi|322415633|gb|EFY06379.1| diguanylate cyclase (GGDEF) domain [Succinatimonas hippei YIT
           12066]
          Length = 516

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 73/139 (52%), Gaps = 9/139 (6%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +++   DIDYFK +ND+ GH  GD+V+  ++  L         + R GGEEF        
Sbjct: 378 MAVCMLDIDYFKCLNDSMGHIEGDRVLHRIAIVLKEKVAGSDLIYRYGGEEFCIILFDVK 437

Query: 189 EQEAAILANDLRKIIENSQI---NISSGPSIHITISAG---IAERCHKEPISTIIYRADQ 242
           +++   +A  L K IE+  +    I   P   +TISAG   IA+    + I  +I++AD 
Sbjct: 438 QEDVLKIAKRLCKEIESLNLINKGICDKP---VTISAGTSLIAKDDKSDTIIDLIHQADS 494

Query: 243 ALYVAKKSGRNRVVCFSDI 261
           ALY AK SGRN  V + ++
Sbjct: 495 ALYRAKNSGRNCAVSYEEV 513


>gi|313498345|gb|ADR59711.1| GGDEF domain-containing protein [Pseudomonas putida BIRD-1]
          Length = 381

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 102/203 (50%), Gaps = 15/203 (7%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           L+  +SLV  ++ I L+   ++G++    +    RI++L+  D L+ L N  A     G 
Sbjct: 176 LIIQVSLVEGAMAIMLIALSMTGTVR---YRREERIARLAARDPLTALYNRRALEVRAGH 232

Query: 125 YNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           + + +S      ++  DID FK +ND  GH  GD+++  LS+ +           RLGG+
Sbjct: 233 FFKDVSPAQPGALLLIDIDNFKLVNDLHGHIAGDRLLIALSEMIRTTLPERSLAARLGGD 292

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEP--IST 235
           EF     G+S +    L + LR+  +  Q    + P+ H +T+S G A    + P  ++ 
Sbjct: 293 EFVILLSGASSERVMELGSGLRE--QFQQYADKTVPTPHAVTLSIG-ANVFDQPPASLAA 349

Query: 236 IIYRADQALYVAKKSGRNRVVCF 258
           +I + D ALY +K+ GR+ +  F
Sbjct: 350 LIEQGDVALYQSKRGGRDSIRFF 372


>gi|206559409|ref|YP_002230170.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
 gi|206561189|ref|YP_002231954.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
 gi|198035447|emb|CAR51324.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
 gi|198037231|emb|CAR53152.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
          Length = 492

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 16/206 (7%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           +LV       I++++ L      G  L+    + + +  L+R D L+GL N  +F   L 
Sbjct: 290 LLVATFGAAFIALSVFL------GVQLRRRMRAESELELLARTDGLTGLNNRRSFGEVLD 343

Query: 124 SYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRL 175
               +        S++F D+D FK  ND +GH  GD  +A ++  +      P     R 
Sbjct: 344 REWRRARRAHSVFSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPTDTAARY 403

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PI 233
           GGEEF      +    AA  A  +R  I    +  +      +T S G+A     +    
Sbjct: 404 GGEEFVVLLPDTPPTGAAQTAERIRAAINELALEHAGSEYGRVTASIGLASWTPDQDGDP 463

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
             +I  AD+ALY AK +GRN+V  F 
Sbjct: 464 GAVIKAADEALYYAKAAGRNKVSAFQ 489


>gi|302871692|ref|YP_003840328.1| diguanylate cyclase with GAF sensor [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574551|gb|ADL42342.1| diguanylate cyclase with GAF sensor [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 557

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 82/176 (46%), Gaps = 20/176 (11%)

Query: 97  YNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y ++  ++ +D L+G  N           I + G     +SI  FD+D FK++ND +GH 
Sbjct: 382 YQQMRSMAMVDGLTGAFNRIYLYEFLEKEIQTSGR-RYPISIALFDVDNFKKLNDTYGHL 440

Query: 150 VGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            GDKV+     Q VV            V R GGEEF          EA  +   +R+ IE
Sbjct: 441 FGDKVL-----QTVVRIAREKVRKGDIVARYGGEEFIIVFNHLESNEAYKVVERIRRAIE 495

Query: 205 NSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  I   +     +T+S GIA    H + +  +I  AD A+Y AK SG+N  V ++
Sbjct: 496 SETIE-DNLIQTRVTVSFGIASYPLHADNVKDLIKCADVAMYRAKSSGKNCTVIYN 550


>gi|238024145|ref|YP_002908377.1| PAS/PAC sensor-containing diguanylate cyclase [Burkholderia glumae
           BGR1]
 gi|237878810|gb|ACR31142.1| Diguanylate cyclase with PAS/PAC sensor [Burkholderia glumae BGR1]
          Length = 600

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 10/170 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPVG 151
           + +L+  D L+ L N   F++   +   +L        +++  D+D+FK +ND +GH +G
Sbjct: 432 LHELATTDHLTELSNRRDFLARSEAELARLRHAGRGATAVLMLDLDHFKSLNDRWGHALG 491

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+ +   +  L         VGR+GGEEFA    G     A      L++ +  S + + 
Sbjct: 492 DRALRHFAQLLRQEARGNDIVGRIGGEEFAVVLPGLGIDAALAFGMRLQRRMSTSPLALD 551

Query: 212 SGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260
               + +T+S G+      +P +  ++ R D+ALY+AK  GRNRV  + +
Sbjct: 552 DRLVV-LTVSIGVDRMIPTDPGVDQVLTRCDKALYLAKARGRNRVELYGE 600


>gi|209515146|ref|ZP_03264014.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160]
 gi|209504400|gb|EEA04388.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160]
          Length = 648

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 108/235 (45%), Gaps = 34/235 (14%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI--LKELFISYNRISQLS-- 104
           FL  IG   F+ +   +   L  V +++ I L     + ++   +EL +S     QLS  
Sbjct: 154 FLVSIGSPVFFAMAVDM--TLVGVALAVVIQLYWRTFADAVHAQRELRVSQQHTQQLSDD 211

Query: 105 -----RIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
                 +D L+GL N  +F SSL + +E+        ++   D+D FKQ+ND +GH  GD
Sbjct: 212 NYRLANLDSLTGLPNRRSFFSSLHAISEQALETGGGFNVGLIDLDGFKQVNDIYGHTSGD 271

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-----LANDLRKIIENSQ 207
            V+  +  +L+    T +   RLGG+EF A        EA +     + + LR+  + + 
Sbjct: 272 LVLQEVGTRLLSFSETGLMFARLGGDEFGAIVRHKLSTEALVALGQRICDALRQPYQVAD 331

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIY---RADQALYVAKKSGRNRVVCFS 259
            N++        +S  I      E  ST+     RAD ALYV K++ R   V FS
Sbjct: 332 -NVAE-------LSGTIGWAAFPEAGSTVAQVFERADAALYVGKENRRGMPVIFS 378


>gi|153005558|ref|YP_001379883.1| diguanylate cyclase [Anaeromyxobacter sp. Fw109-5]
 gi|152029131|gb|ABS26899.1| diguanylate cyclase [Anaeromyxobacter sp. Fw109-5]
          Length = 489

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 14/174 (8%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           + ++ +LS+ D L+   N  +  + L         +    ++   D+D+F++ ND FGH 
Sbjct: 274 HQKMVRLSQTDALTAAHNRRSLFARLEDELERSARFEHATAVALVDVDHFRRYNDAFGHA 333

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI- 208
            GD V+  ++  L         V R GGEEFA     +    A   A  LR+ +  ++I 
Sbjct: 334 AGDAVLRRVAAVLGAAVRRVDLVARYGGEEFAVVLARADRGAALAAAEKLREAVTAARIP 393

Query: 209 NISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +   GP  H+TIS G+A   +     P   +I  AD ALY AK++GR+ V  ++
Sbjct: 394 HPGVGPG-HVTISVGVAVYPDDARDLP--ALIDAADGALYAAKRAGRDVVRAYA 444


>gi|114777850|ref|ZP_01452781.1| sensory box-containing diguanylate cyclase, putative [Mariprofundus
           ferrooxydans PV-1]
 gi|114551841|gb|EAU54381.1| sensory box-containing diguanylate cyclase, putative [Mariprofundus
           ferrooxydans PV-1]
          Length = 800

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 14/175 (8%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148
           S  R+ QL+  D L+GL N + F   L         + +  +++F D+D+FK+IND  GH
Sbjct: 626 SEERLQQLAHNDMLTGLPNRTLFYDRLNQALALAQRHKQAFAVMFLDLDHFKEINDTLGH 685

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA--ILANDLRKIIENS 206
            +GD ++   + +L     +   V R+GG+EF      ++ +EA   +    LR++ +  
Sbjct: 686 DMGDLLLREAATRLRSCVRSMDTVARMGGDEFTIILTETAVREAVEKVAEKLLRELQQPF 745

Query: 207 QINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +N   G   H+  S GIA    H     T+I  AD A+Y AK+  RN    FSD
Sbjct: 746 SLN---GEIRHVGCSIGIALYPKHGLDSETLIKHADIAMYDAKRE-RNSYCFFSD 796


>gi|91792302|ref|YP_561953.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91714304|gb|ABE54230.1| GGDEF domain [Shewanella denitrificans OS217]
          Length = 335

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 98/223 (43%), Gaps = 30/223 (13%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFI-----------SYNRISQLSRID 107
           +G + +L++      + + +SL     S S  K +FI            Y  + +L+R D
Sbjct: 113 HGPKEVLLKRNDGQPLEVDLSLSCLPASDSNPKAVFIGIMHNLSSHKAEYKELRRLARTD 172

Query: 108 CLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+ L N  AF   L        S+   LS+V  D+DYFK  ND  GH  GD+ +  ++ 
Sbjct: 173 SLTQLANRHAFDEVLQRNWQECVSHGLPLSLVIIDVDYFKSFNDAHGHVQGDECLKRIAQ 232

Query: 161 QLVVVFGTP---MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSI 216
             V+    P       R GGEEFA    G +   A   A  +++ I            S+
Sbjct: 233 --VIQAALPSRHCLAARYGGEEFALILPGCNAHIAEATAMRVQQQINKLSFTAQGLDASV 290

Query: 217 HITISAGIAERCHK----EPISTIIYRADQALYVAKKSGRNRV 255
            I++S GIA  C +       + ++  AD ALY AK  GR+R+
Sbjct: 291 KISVSQGIA--CERNGQFRTPTALLCAADTALYRAKSDGRDRI 331


>gi|78049144|ref|YP_365319.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78037574|emb|CAJ25319.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 1000

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 1/122 (0%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+IND++GH VGD V++ +   L        F  R GGEEF  AA G    +A  
Sbjct: 878 DIDHFKRINDDYGHEVGDAVLSSIGGVLSEQDQAHCFAARHGGEEFLLAATGLDAGQARA 937

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           L   +R+ +   +++ + G ++  T S G+A          ++  AD  LY AK+ GR+R
Sbjct: 938 LFERMRQRLAVIEVD-AQGMTVRCTASMGMAMSDEAPSRRELLALADHRLYEAKRQGRDR 996

Query: 255 VV 256
           ++
Sbjct: 997 LI 998


>gi|332527196|ref|ZP_08403268.1| response regulator [Rubrivivax benzoatilyticus JA2]
 gi|332111620|gb|EGJ11601.1| response regulator [Rubrivivax benzoatilyticus JA2]
          Length = 350

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 91/213 (42%), Gaps = 8/213 (3%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           +  L P Y  + +L   +   ++  +   LLG   G +L     +   +  L+  D L+G
Sbjct: 128 HAALNPSYYTDPMLPGGMQAALLLTSFVALLGSGFGFVLACTERATRSLEHLASHDHLTG 187

Query: 112 LLNHSA----FISSLGSYNEKLSIVFF---DIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
            LN         ++L       S V +   D+D FK IND  GH  GD+V+   +  +  
Sbjct: 188 ALNRQPAELLLTNALQRARRDRSTVAYVLIDLDRFKSINDRHGHVFGDEVLRRFAQTVDA 247

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                    R GGEEF      S    A  +  +LR+      +    G    +T SAG+
Sbjct: 248 RLRATDVFSRCGGEEFGLVLPDSDAAGALGVVEELRQACAAMGLMTDDGCPFVLTFSAGV 307

Query: 225 AERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256
           A        +  +YR AD+ALY AK +GR+RVV
Sbjct: 308 ALSPSGRVGAEALYRNADRALYEAKHAGRDRVV 340


>gi|254561939|ref|YP_003069034.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens
           DM4]
 gi|254269217|emb|CAX25183.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL), with
           PAS sensor, signal transduction histidine kinase and
           methyl-accepting chemotaxis domains; putative
           membrane-associated protein [Methylobacterium extorquens
           DM4]
          Length = 954

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 16/168 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPV 150
           RI  ++R D L+GL N   F   L     +L        + +  D+D FK++ND  GHP+
Sbjct: 518 RIITMARKDALTGLANRMVFGERLEEAAARLDDGAGAGFATLCLDLDRFKEVNDTLGHPI 577

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-----SSEQEAAILANDLRKIIEN 205
           GD ++  ++++L         V RLGG+EFA    G      + ++A+ LA   R I   
Sbjct: 578 GDGLLRSVAERLQGCLRDTDLVARLGGDEFAIVQAGVQAGTHARRDASALAK--RLIAAF 635

Query: 206 SQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252
            Q  +  G ++ + +S GI+    H      ++  AD ALY AK +GR
Sbjct: 636 QQPFLLDGHTVTVGLSIGISLAPEHGTSPEKLLKSADLALYRAKATGR 683


>gi|188574378|ref|YP_001911307.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188518830|gb|ACD56775.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 510

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 8/164 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           ++ L R D L+G LN   F               + L +   D+D F+++N+  GH  GD
Sbjct: 345 VAGLVREDQLTGALNRRGFEELFQREAVRTQRSGQPLCVAMLDLDDFRRLNETHGHAGGD 404

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +    D    V  T   + R GGEEF      S+  EA+     L++ +    + +  
Sbjct: 405 AALRHTVDVAKAVLRTTDAIARFGGEEFVLLLPDSTIFEASAAVIRLQRALSQRSL-LHD 463

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              + I+ SAG+A R   E    +I RAD+A+Y AK +G+NRV+
Sbjct: 464 DVRVFISFSAGVALRGTDETQDDVIRRADRAMYDAKSAGKNRVI 507


>gi|218780701|ref|YP_002432019.1| diguanylate cyclase with PAS/PAC sensor [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762085|gb|ACL04551.1| diguanylate cyclase with PAS/PAC sensor [Desulfatibacillum
           alkenivorans AK-01]
          Length = 304

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 5/160 (3%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           +++++  +C  G     A ++    Y     I+F D+D FKQ+ND +GH VGD V+  ++
Sbjct: 146 LTRVANRNC--GEARMEAKLNEFRRYGWPFGILFCDVDKFKQVNDTYGHDVGDLVLKAVA 203

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS---I 216
             L         V R GG+EF         Q  + +A  + +IIE S++ I SG     +
Sbjct: 204 KTLSGNLRASDIVCRWGGDEFLVILPSIDLQTLSQIAEKVLRIIEKSRVTIGSGDDQRIV 263

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +T S G       + + +++ RAD+ +Y +K++G N+  
Sbjct: 264 KVTSSIGGTVARLDDTVESLLKRADELMYRSKRAGANQAA 303


>gi|218530951|ref|YP_002421767.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium chloromethanicum CM4]
 gi|218523254|gb|ACK83839.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium chloromethanicum CM4]
          Length = 954

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 16/168 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPV 150
           RI  ++R D L+GL N   F   L     +L        + +  D+D FK++ND  GHP+
Sbjct: 518 RIITMARKDALTGLANRMVFGERLEEAAARLDEGAGAGFATLCLDLDRFKEVNDTLGHPI 577

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-----SSEQEAAILANDLRKIIEN 205
           GD ++  ++++L         V RLGG+EFA    G      + ++A+ LA   R I   
Sbjct: 578 GDGLLRSVAERLQGCLRDTDLVARLGGDEFAIVQAGVQAGTHARRDASALAK--RLIAAF 635

Query: 206 SQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252
            Q  +  G ++ + +S GI+    H      ++  AD ALY AK +GR
Sbjct: 636 QQPFLLDGHTVTVGLSIGISLAPEHGTSPEKLLKSADLALYRAKATGR 683


>gi|163852193|ref|YP_001640236.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163663798|gb|ABY31165.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 954

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 16/168 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPV 150
           RI  ++R D L+GL N   F   L     +L        + +  D+D FK++ND  GHP+
Sbjct: 518 RIITMARKDALTGLANRMVFGERLEEAAARLDDGAGAGFATLCLDLDRFKEVNDTLGHPI 577

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-----SSEQEAAILANDLRKIIEN 205
           GD ++  ++++L         V RLGG+EFA    G      + ++A+ LA   R I   
Sbjct: 578 GDGLLRSVAERLQGCLRDTDLVARLGGDEFAIVQAGVQAGTHARRDASALAK--RLIAAF 635

Query: 206 SQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252
            Q  +  G ++ + +S GI+    H      ++  AD ALY AK +GR
Sbjct: 636 QQPFLLDGHTVTVGLSIGISLAPEHGTSPEKLLKSADLALYRAKATGR 683


>gi|119486307|ref|ZP_01620366.1| hypothetical protein L8106_16674 [Lyngbya sp. PCC 8106]
 gi|119456520|gb|EAW37650.1| hypothetical protein L8106_16674 [Lyngbya sp. PCC 8106]
          Length = 1260

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 14/185 (7%)

Query: 87   GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            G +  +L I+   + +L+  D L+ + N   F          L    ++LS++  DID F
Sbjct: 1077 GQLYHQLEIANQELERLAARDGLTQIANRHCFDRVLEKEWQRLMRSPDQLSLILCDIDNF 1136

Query: 140  KQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILAND 198
            K  ND +GH  GD  +  ++  +      P   V R GGEEFA     +S + A  +A +
Sbjct: 1137 KLYNDTYGHQAGDYCLQQVAQAIQAGVKRPADLVARYGGEEFAVILPNTSLEGALRVAEE 1196

Query: 199  LRKIIENSQINISSGPSIH--ITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNR 254
            +R  +    + +S   S H  +T+S G+          +S +I  AD+ALY AK +GR+R
Sbjct: 1197 IR--VRVRGLGVSHTGSAHQCVTLSLGVTSLIPNTSSSVSKLIGAADEALYRAKATGRDR 1254

Query: 255  VVCFS 259
              C S
Sbjct: 1255 SCCSS 1259



 Score = 37.0 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 20/167 (11%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           SY+ +++L     L   L   A I +L +  E ++I   D+D FK IN++FG+ VGD+++
Sbjct: 428 SYDNVTKLPNHIVLEQQLT-LALIDALNN-AEIMAIAILDLDKFKNINESFGYQVGDQLL 485

Query: 156 A----FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
                 L D+L  +      + R  G+ F          E A  A+D     + S +N+ 
Sbjct: 486 QEVAIRLQDRLAQLQLKNSLLARWHGDGFVFIL-----SEVA-YADDAISFCQ-SLLNVL 538

Query: 212 SGP------SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSG 251
           S P      +I++  S GI    +  E   T++  A+ AL  AK+ G
Sbjct: 539 SEPFYLQNQAIYLNASIGITLAPYDGETSETLLRNAEIALDQAKQYG 585


>gi|330824013|ref|YP_004387316.1| diguanylate cyclase [Alicycliphilus denitrificans K601]
 gi|329309385|gb|AEB83800.1| diguanylate cyclase [Alicycliphilus denitrificans K601]
          Length = 526

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 79/183 (43%), Gaps = 28/183 (15%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           +L    +  S  +R D L+G LN      ++          +  L +   D+D FK IND
Sbjct: 354 QLRRDLDHASAQARHDPLTGALNRKGLDEAMEREIARAFRLDTPLCVALLDVDNFKAIND 413

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN----DLR 200
             GH  GD+ +  L      V      + R GGEEF             IL N    D  
Sbjct: 414 RLGHAAGDEALMHLVRVTREVMRPQDQLARHGGEEFVL-----------ILPNTQLADGV 462

Query: 201 KIIENSQINISS------GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           K +E  Q  ++          + IT SAG+A+   K   +  I RAD+ +Y+AK+SG+NR
Sbjct: 463 KAMERLQRELTKRYFLKEQERLLITFSAGVAQVEGKNGSADAIRRADEGMYLAKRSGKNR 522

Query: 255 VVC 257
           VV 
Sbjct: 523 VVA 525


>gi|330809254|ref|YP_004353716.1| GGDEF domain-containing protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377362|gb|AEA68712.1| Hypothetical protein, GGDEF domain-containing protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 417

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 82/173 (47%), Gaps = 11/173 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +   +  LSR D L+GL N   F             +   L+++  D+D+FK  ND
Sbjct: 241 ELKAANQALEALSRHDDLTGLANRRYFDELKDIEFRRAIRHKTPLAVLMCDVDFFKIYND 300

Query: 145 NFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  +++ L  VFG +     R+GGEEF          +A   A   R  +
Sbjct: 301 TYGHMQGDLCLKEIAETLRSVFGRSGELTARVGGEEFVVVLPNVDAAQACEAAQRFRTSL 360

Query: 204 ENSQINIS-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253
              ++  S S  S  +T+S G+AE   +  +    ++ RADQALY AK  GR+
Sbjct: 361 AERELPHSGSKVSSFVTVSIGVAELDPETMDHFDQLLQRADQALYRAKHKGRD 413


>gi|260438041|ref|ZP_05791857.1| AdrA protein [Butyrivibrio crossotus DSM 2876]
 gi|292809520|gb|EFF68725.1| AdrA protein [Butyrivibrio crossotus DSM 2876]
          Length = 474

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 88/175 (50%), Gaps = 18/175 (10%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +S  ++ D L+GL N  +F +      S  S + + ++   D+D FK +ND  GH  GD+
Sbjct: 303 LSSEAKRDGLTGLYNRRSFDALIDEFMSNKSVSSEGALFLIDMDNFKNVNDTLGHIAGDE 362

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAILANDLRKIIENSQI 208
            +  L+  + +VF    ++GR GG+EF A    + + E      + L   + +  E+   
Sbjct: 363 ALKTLAGAMRIVFPGG-YLGRYGGDEFIAFVPSTCDDETLDRLGSSLCKKMDREFEHG-- 419

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
               G S+ +++S GI      +  + +  +AD+ALY +K+ GRN+    S ++N
Sbjct: 420 ----GKSVRLSVSVGIVNTVGIDDYAELYMKADKALYYSKEHGRNQYTLASSLDN 470


>gi|255523664|ref|ZP_05390631.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium carboxidivorans P7]
 gi|255512719|gb|EET88992.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium carboxidivorans P7]
          Length = 973

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 83/160 (51%), Gaps = 9/160 (5%)

Query: 107 DCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ L N    +  L    S N+  +++  D+D FK IND  GH  GDKV+  +S++L 
Sbjct: 552 DSLTNLPNRRKLMEILEDDISKNKYGALMLLDLDNFKGINDTLGHLYGDKVLKKVSEKLQ 611

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQINISSGPSIHITIS 221
            +    MF+ R GG+EF    L   E++ AI+ N   +II    +++ I  G  I+++ S
Sbjct: 612 YIKDEKMFISRFGGDEF--LILIQDEKDIAIIENYANQIINVFKNKLVI-EGQEIYLSCS 668

Query: 222 AGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            G+         +S ++  AD A+Y  K  G+N  + F++
Sbjct: 669 MGVTLYPFDSNKVSQLLMNADMAMYKVKNKGKNNYMFFNE 708


>gi|254563188|ref|YP_003070283.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens
           DM4]
 gi|254270466|emb|CAX26466.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL) with
           PAS/PAC sensor [Methylobacterium extorquens DM4]
          Length = 700

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 14/178 (7%)

Query: 99  RISQLSRIDCLSGLLNHS-------AFISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPV 150
           RI  ++R D L+ L N +        ++++L +  E  L+++  D+D FK +ND+FGH V
Sbjct: 260 RIIHMARHDGLTDLPNRTRLREVGAEWLAALRTDAEAPLAVLCLDLDRFKPVNDSFGHAV 319

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD ++  ++D+L     +   V RLGG+EFA     S  ++AA  A    ++IE      
Sbjct: 320 GDALLRAVADRLRGHVRSHDVVARLGGDEFAVL---SRVEDAAAAAALAERLIETVAAPY 376

Query: 211 S-SGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           +  G ++ I +SAGI  AE      I  ++  AD ALY AK  GR  V  F    + T
Sbjct: 377 TLDGITVEIGMSAGIALAEGDVPHDIERLLKEADLALYEAKTEGRGTVRLFEPQMDET 434


>gi|237803761|ref|ZP_04591346.1| sensory box protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025741|gb|EGI05797.1| sensory box protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 194

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 2/129 (1%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+ +  DID FK +ND +GH  GD V+  +++            GR+GGEEFAA   G +
Sbjct: 65  LAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCA 124

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVA 247
              A  +A  L++ I+      S G +  IT S G+     ++     +Y RAD A+Y A
Sbjct: 125 PDMAMQIAERLQREIQRQNFQ-SGGVTFSITASQGLTNLGPEDQSLEALYGRADAAMYQA 183

Query: 248 KKSGRNRVV 256
           K+ G+N++V
Sbjct: 184 KRQGKNQIV 192


>gi|159185109|ref|NP_355183.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
 gi|159140380|gb|AAK87968.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
          Length = 694

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 87/173 (50%), Gaps = 17/173 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAFIS---------SLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           R   LS  D L+G+ N +AFI          S+G++   LSI   D+D FK+IND  GH 
Sbjct: 248 RYRHLSLHDPLTGIPNRAAFIEHLNRRTRHISMGAHTALLSI---DLDRFKEINDVHGHA 304

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++D+   V     F+ R+GG+EF   A+  S    A  A   +++IE     
Sbjct: 305 AGDAVLRAIADRASSVLKAGEFLARMGGDEF--VAMTHSYYTRADGAEFAQRLIEQISKP 362

Query: 210 IS-SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  +G +  +  S GI+ R        T++ +AD A+Y A KS  +  +CF D
Sbjct: 363 VEWNGQTFSVGASVGISVRNTGSIDADTLMAQADVAMYRA-KSATSDTICFYD 414


>gi|157960586|ref|YP_001500620.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella pealeana ATCC 700345]
 gi|157845586|gb|ABV86085.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella pealeana ATCC 700345]
          Length = 839

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 81/142 (57%), Gaps = 7/142 (4%)

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           N +L +V+ D+D FKQIN+++GHPVGD+V+  +S +     G  +   RLG +EF A  L
Sbjct: 439 NTRLGLVYIDVDLFKQINESYGHPVGDEVLLEVSRRFSQSLGDLVTAARLGSDEF-ALLL 497

Query: 186 GSSEQEAAILA--NDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRAD 241
            + +   A+L   N+LRK+ +   I    G +  +T S G+A      ++P S ++  A+
Sbjct: 498 PNIDSNDALLQQINNLRKVFDQPFILGEHGQA-RLTSSMGVAIYPDDAQDP-SGLLVNAE 555

Query: 242 QALYVAKKSGRNRVVCFSDIEN 263
            A++ AK+ GRN    +++  N
Sbjct: 556 IAMHRAKQDGRNNCAFYTESLN 577


>gi|126441543|ref|YP_001058200.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 668]
 gi|126221036|gb|ABN84542.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 668]
          Length = 772

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 16/204 (7%)

Query: 62  EYILVENLSLVIIS-ITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +Y    N+ L++   IT+++L   G  +G I K L      ++QL+  D L+GL N  A 
Sbjct: 278 DYHHTRNVYLLMTGFITLAMLAFFGVATGLIGK-LLGREREMTQLAEFDLLTGLANRYAT 336

Query: 119 ISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           + SL       S   +L+I+F D+D FK +ND  GH  GD V+   + +L         +
Sbjct: 337 LRSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVANEGAL 396

Query: 173 GRLGGEEFAAAALGSS-EQEAAILANDL-RKIIENSQINISSGPSIHITISAGIA-ERCH 229
            R+GG+EF     G + E+ A  LA  + R   E   +    G S  +  S GIA     
Sbjct: 397 ARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPFDVR---GSSFVLHASIGIALHSVE 453

Query: 230 KEPISTIIYRADQALYVAKKSGRN 253
            E    ++ +AD A+Y AK +G+N
Sbjct: 454 NESEIDLLKKADLAMYSAKDAGKN 477


>gi|150398003|ref|YP_001328470.1| PAS/PAC and Chase sensor-containing diguanylate
           cyclase/phosphodiesterase [Sinorhizobium medicae WSM419]
 gi|150029518|gb|ABR61635.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Sinorhizobium medicae WSM419]
          Length = 878

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 46/134 (34%), Positives = 68/134 (50%), Gaps = 5/134 (3%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           K+SI   D+D FKQIND  GH  GD+++   +  L        FV R+GG+EF       
Sbjct: 483 KISIFHIDLDRFKQINDTMGHAAGDEILKHAASLLRDNARQDDFVARIGGDEFVIIRASD 542

Query: 188 SEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCH-KEPISTIIYRADQALY 245
              E A +A+   ++IE   + +        I +S GIA +    + +S ++  AD ALY
Sbjct: 543 GADEDAAMAS---RVIEAMSVPVRYEDQECRIGVSIGIAAQTDATDDLSQVLVNADIALY 599

Query: 246 VAKKSGRNRVVCFS 259
            AK+ GRNR   F+
Sbjct: 600 EAKRRGRNRQETFT 613


>gi|54026479|ref|YP_120721.1| hypothetical protein nfa45060 [Nocardia farcinica IFM 10152]
 gi|54017987|dbj|BAD59357.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 571

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 102/219 (46%), Gaps = 15/219 (6%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI--SGSILKELFISY 97
           A VI +A   L    L P  G     V+ +  V+ ++ + LL+G +      ++    S 
Sbjct: 264 AGVIAVA---LIVAALVPALGTRLGTVDRV--VVATLFVLLLIGVLVRGERAVQRSARSE 318

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGD 152
            R    +  D L+GLLN +A + +L           LS++F D+D FK++ND++GH VGD
Sbjct: 319 RRAQYQADHDMLTGLLNRTALLRTLARERADWRAGPLSLLFLDLDGFKRVNDSYGHAVGD 378

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           ++IA  + ++  V G      R GG+EF         +EA  LA  L          +S 
Sbjct: 379 ELIANAAARIRRVAGRIPVCARYGGDEFVVLTP-CGVREAVTLAERLLDAF-GRPFELSV 436

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           G ++ +T S GI        I  +I  AD A+Y AK  G
Sbjct: 437 G-AVPVTASVGITSADGDADIFDLIRDADAAMYRAKDQG 474


>gi|113971650|ref|YP_735443.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113886334|gb|ABI40386.1| diguanylate cyclase [Shewanella sp. MR-4]
          Length = 302

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 9/169 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ QLS  D L+GL N       L         ++   SI+  D+D+ K+IND  GH  G
Sbjct: 134 QLRQLSDTDQLTGLYNRRRLDRDLQLLFDTFSRHHIPASILVLDLDHLKRINDQLGHQAG 193

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+VI  +++     F       R GG+EF  A  G    +A + A  L      +   +S
Sbjct: 194 DRVIIAVAEACQQQFRKTDSAYRFGGDEFVIALPGVEHDQAIVFAEYLCDCCFKALQKLS 253

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               +  T+S G+A      +     + RAD ALY AK+ G+NRV+  S
Sbjct: 254 V-KGLFATVSIGVASIEAGDKSYEDTLKRADAALYQAKRDGKNRVIANS 301


>gi|332532837|ref|ZP_08408710.1| putative two-component response regulator protein with GGDEF domain
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037683|gb|EGI74134.1| putative two-component response regulator protein with GGDEF domain
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 407

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 78/161 (48%), Gaps = 7/161 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           I + +  D L+GL N   F       L S N+K ++   DID+FK IND  GH  GD+ +
Sbjct: 250 IKESAHRDHLTGLHNRRYFYQYAEKLLKSKNQKNTLALLDIDFFKNINDTLGHEGGDQAL 309

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +   +   F +   V R+GGEEFA        +         RK + +   +IS   S
Sbjct: 310 KQVGSLIRTTF-SKFTVARVGGEEFAIILPEIELERGREYFEAFRKKLASYDFSISD-KS 367

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           I IT S G+A+      ++  +  AD+ALY AK  GRN VV
Sbjct: 368 IKITTSIGLAD-FQDTSLTQAMRVADKALYEAKNQGRNCVV 407


>gi|330501291|ref|YP_004378160.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas
           mendocina NK-01]
 gi|328915577|gb|AEB56408.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas mendocina
           NK-01]
          Length = 618

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 81/175 (46%), Gaps = 18/175 (10%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ +LS++D L+GL N   F   L +        +  L+++  DID+FK  ND  GH  G
Sbjct: 438 QLQRLSQLDGLTGLYNRRYFDQQLAAEWRRLRRIDAPLALLMLDIDHFKAYNDALGHLAG 497

Query: 152 DKVIAFLSDQLVVVFGTPMFVG-RLGGEEF----AAAALGSSEQEAAILANDLRKIIENS 206
           D  +  +S  L            R GGEEF    A   L  +EQ AA +   L  +    
Sbjct: 498 DDALRRVSSALRESLQREGDTACRYGGEEFAIILANTGLEGAEQVAARIHTALASL---- 553

Query: 207 QINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I+  + P   +T+S GI  A+    E    ++ R DQALY AK  GRNR   + 
Sbjct: 554 DIHHPASPFGRLTLSIGIMAADPVSDEQPGELVARCDQALYQAKHLGRNRTAFWQ 608


>gi|328542935|ref|YP_004303044.1| diguanylate cyclase with PAS/PAC sensor [polymorphum gilvum
           SL003B-26A1]
 gi|326412681|gb|ADZ69744.1| Diguanylate cyclase with PAS/PAC sensor [Polymorphum gilvum
           SL003B-26A1]
          Length = 299

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 69/141 (48%)

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           ++   +  E ++++  D+D+FK+IND FGH  GD+V+A +++ +           R GGE
Sbjct: 155 VAQAHASGEAVNLIMMDVDHFKRINDRFGHLFGDQVLAGIAESVTASVRAQDLFFRYGGE 214

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EF      +       L   +R  +E  + +      + +T S G+A       +   I 
Sbjct: 215 EFLLCIRHADLSAVMTLCERIRTTVEGLRFSGPQDEDVRVTASFGLAPLDPGTTLDGAID 274

Query: 239 RADQALYVAKKSGRNRVVCFS 259
            AD+ALY AK +GRNRV  + 
Sbjct: 275 NADRALYDAKAAGRNRVAIWD 295


>gi|303247504|ref|ZP_07333776.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio fructosovorans JJ]
 gi|302491200|gb|EFL51092.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio fructosovorans JJ]
          Length = 305

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 92/194 (47%), Gaps = 15/194 (7%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NE 127
            IT+ ++   +   +  EL    + +  LS  D L+G+ N   F   L          N 
Sbjct: 110 PITVPIVQARVRAHV--ELKRRGDLLETLSMRDGLTGIPNRRRFDEYLNRAWRHALRCNT 167

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALG 186
            LS++  DID FK  ND +GH  GD+ +  ++  L      P   V R GGEEF A  L 
Sbjct: 168 PLSMIMADIDDFKAYNDAYGHMAGDECLRAVAGALSGALRRPGDLVARFGGEEF-AVVLE 226

Query: 187 SSEQEAAI-LANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPIS--TIIYRADQ 242
            +E   A+ LA  +R  + +  +      +   +T+S G A    K  ++  T+I  AD+
Sbjct: 227 HTELPGALHLAEAMRAAVIDLDLGHEDSRAAQVVTVSLGAATLTPKAGMTPETLIGAADR 286

Query: 243 ALYVAKKSGRNRVV 256
            LY AK++GRNRV+
Sbjct: 287 MLYAAKQAGRNRVL 300


>gi|212636403|ref|YP_002312928.1| PAS:GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212557887|gb|ACJ30341.1| PAS:GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 1032

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 17/165 (10%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N    +  LGS         +  +++F D+DYFK++ND  GH +GD ++   +
Sbjct: 584 DPLTGLPNRRMLLDYLGSEILKSDRREKHFALMFLDLDYFKEVNDTLGHDMGDLLLTEAA 643

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA--AILANDLRKIIENSQINISS---GP 214
            +L         V RLGG+EF     G ++ +    +  N L ++ E   +   +     
Sbjct: 644 KRLKSCIRDSDVVARLGGDEFTVVLSGITDIKGVDKVAQNILNRLAEPFSLGEETSYISA 703

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           SI IT+    A       I  ++  ADQA+Y AK  GRNR   F+
Sbjct: 704 SIGITLYPDDA-----SSIEGLLKHADQAMYAAKDQGRNRFHYFT 743


>gi|160938011|ref|ZP_02085368.1| hypothetical protein CLOBOL_02904 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439005|gb|EDP16760.1| hypothetical protein CLOBOL_02904 [Clostridium bolteae ATCC
           BAA-613]
          Length = 839

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 7/159 (4%)

Query: 99  RISQLSRIDCLSGLLNHSA----FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           R+ Q S+ D L+G+ N +A        +  +   L++   D+D FK+IND +GH  GD+V
Sbjct: 660 RLEQRSKRDALTGIYNIAAAKMEITRMINLHTGALALAVIDLDGFKEINDRYGHYTGDQV 719

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   +  L   F       R+GG+EF      + E   A   N L   ++ ++   S  P
Sbjct: 720 LIHTAKALRESFCGEAVTARMGGDEFIVCVPYTGENHLAKCCNALFDSLQ-AKCRASGYP 778

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +  ++I   I+ R  ++  +T+  RAD  LY  K SG+N
Sbjct: 779 AATVSIGISISRR--EDDYTTLYQRADTLLYEVKNSGKN 815


>gi|77165089|ref|YP_343614.1| multisensor diguanylate cyclase/phophodiesterase [Nitrosococcus
           oceani ATCC 19707]
 gi|254433953|ref|ZP_05047461.1| PAS fold family [Nitrosococcus oceani AFC27]
 gi|76883403|gb|ABA58084.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Nitrosococcus oceani ATCC 19707]
 gi|207090286|gb|EDZ67557.1| PAS fold family [Nitrosococcus oceani AFC27]
          Length = 944

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 88/168 (52%), Gaps = 17/168 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  L+  D L+GL N S F+  L         ++ +++++F D+D FK IND  GHP+
Sbjct: 508 QRLYYLAHHDALTGLPNRSLFLDRLEHAIHHAQRHHHRIAVLFIDLDRFKFINDTLGHPI 567

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQI 208
           GD ++  +++++ +       + RLGG+EF       ++  A  L    +KII       
Sbjct: 568 GDILLKQVAERMRLNIRAEDTIARLGGDEFTVIIENFTDTSAISLIT--QKIISACEKPF 625

Query: 209 NISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRN 253
           NI  G  + ++ S G++   E  H+   S ++ RAD A+Y AKK G++
Sbjct: 626 NI-KGNELFVSASIGVSLYPEDGHE--ASMLLQRADAAMYQAKKRGKS 670


>gi|320332722|ref|YP_004169433.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
 gi|319754011|gb|ADV65768.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
          Length = 384

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 3/160 (1%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            R   L ++D L+ L N   F   +        ++  D+D+FK++ND  GH  GD+V+  
Sbjct: 192 ERYRTLMQLDPLTQLFNRRKFDEDIQQAPSPAYLLLLDLDHFKRVNDTHGHDAGDEVLRV 251

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            +  L         V RLGGEE A      + + A  +A  +R+ +E   +   +G    
Sbjct: 252 TAQVLREAVRESDRVYRLGGEELAVLLAPCAAEAARGIAERIRRNVEQD-VAARTGLPEP 310

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +T+S G+    H +   T++   D  LY AK +GRNR+  
Sbjct: 311 VTLSGGLMA-VHGD-QRTLLRAVDALLYTAKAAGRNRIAT 348


>gi|307318092|ref|ZP_07597528.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sinorhizobium meliloti AK83]
 gi|306896133|gb|EFN26883.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sinorhizobium meliloti AK83]
          Length = 1071

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 84/169 (49%), Gaps = 9/169 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE-KLSIVFFDIDYFKQINDN 145
           ++  ++  +++ ++R D L+GL N       F  +L   N  +++++  D+D FK +ND 
Sbjct: 637 EDTLLAQKQMAHMARHDMLTGLANRMFFRECFEEALNESNHARMAVLCLDLDGFKAVNDT 696

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKIIE 204
            GHP GD ++  +S +L+    T   V RLGG+EFA    L  S  EA  LA   R I  
Sbjct: 697 LGHPAGDALLRQVSTRLIQSVRTTETVARLGGDEFAIIQPLTESRDEAFRLAQ--RLIDT 754

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252
            S+     G +  +  S GIA           +I  AD ALY AK SGR
Sbjct: 755 LSEPFSIEGAAATVGTSIGIAFAPEDGTSADELIKAADIALYSAKSSGR 803


>gi|238024593|ref|YP_002908825.1| diguanylate cyclase [Burkholderia glumae BGR1]
 gi|237879258|gb|ACR31590.1| Diguanylate cyclase [Burkholderia glumae BGR1]
          Length = 506

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 12/161 (7%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N  +  +SL             L+I+F DID+FK+ ND +GH VGD+V+A +S
Sbjct: 340 DSLTGLPNRRSLDASLEREWRRAVRSRRPLAILFVDIDHFKRYNDEYGHTVGDEVLACVS 399

Query: 160 DQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             +      +   V R GGEEF      +    A  +   +R  +    I  +   S ++
Sbjct: 400 ASIARQALRSHDVVARYGGEEFVVVLPDTDSAGARAIGERIRDAVRELAIAHAGSESGYV 459

Query: 219 TISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T+S G+A    E      ++ ++  ADQALY AK+ GR+RV
Sbjct: 460 TVSVGVATWRPEAGFAADVAVVVDAADQALYRAKEGGRDRV 500


>gi|225016694|ref|ZP_03705886.1| hypothetical protein CLOSTMETH_00603 [Clostridium methylpentosum
           DSM 5476]
 gi|224950498|gb|EEG31707.1| hypothetical protein CLOSTMETH_00603 [Clostridium methylpentosum
           DSM 5476]
          Length = 849

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 14/159 (8%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           +R D L+ L N +A  S +     KL      +++  D+DYFK IND +GH VGDK++  
Sbjct: 689 ARKDSLTQLFNAAACRSLISQRLSKLESDGHGALIILDVDYFKNINDLYGHFVGDKMLVE 748

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL--RKIIENSQINISSGPS 215
            +  +   F     VGRLGG+EF     G + +E       +   KI     IN+ +  S
Sbjct: 749 TATAINSTFRKQDIVGRLGGDEFIIYMDGETGEETVRERCSMLCEKI---GSINLPNASS 805

Query: 216 IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
             I++S G+A  RC++   + +  +AD+ALY  K  GRN
Sbjct: 806 -RISVSIGVAIARCNQS-FNALYQQADRALYQVKNRGRN 842


>gi|222147769|ref|YP_002548726.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221734757|gb|ACM35720.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 1051

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 85/178 (47%), Gaps = 11/178 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144
           EL ++ NRI   +  D L+GL N      +L S          + +I+  D+D FK+IND
Sbjct: 611 ELELTKNRIEFNALHDPLTGLANRRKLDIALDSLTRQSQANRSRFTILHLDLDRFKEIND 670

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD ++   +  L     +   V R+GG+EF     G  + +AA  A    +II+
Sbjct: 671 TLGHAAGDAMLVNAARVLSRHMNSGDLVARIGGDEFVVLLHGPIDAKAA--AELAERIIQ 728

Query: 205 NSQINIS-SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  I +   G      +S GIAE +  +     I+  AD ALY AK+ GRN    F+D
Sbjct: 729 DINIPVDFEGFICRCGVSIGIAEAKGLRTDARKILINADLALYEAKRQGRNCFQFFTD 786


>gi|218458642|ref|ZP_03498733.1| hypothetical protein RetlK5_03953 [Rhizobium etli Kim 5]
          Length = 226

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 63/125 (50%), Gaps = 1/125 (0%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +  FDID FK+IND  GH  GD V+   + ++          GR+GGEEF      +  +
Sbjct: 100 LAVFDIDNFKRINDRLGHHAGDLVLRDFAHRIHQNVRRNDCFGRVGGEEFLLVMPATGPE 159

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +A  +   +  +I  S+  +   P    T SAGIA     +  S +  RADQALY AK  
Sbjct: 160 DALAMVERMLTVIRFSR-PLPDSPDFSYTCSAGIAAGVPTDSASELYRRADQALYDAKMG 218

Query: 251 GRNRV 255
           GR+RV
Sbjct: 219 GRDRV 223


>gi|217419624|ref|ZP_03451130.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 576]
 gi|217396928|gb|EEC36944.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 576]
          Length = 772

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 16/204 (7%)

Query: 62  EYILVENLSLVIIS-ITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +Y    N+ L++   IT+++L   G  +G I K L      ++QL+  D L+GL N  A 
Sbjct: 278 DYHHTRNVYLLMTGFITLAMLAFFGVATGLIGK-LLGREREMTQLAEFDLLTGLANRYAT 336

Query: 119 ISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           + SL       S   +L+I+F D+D FK +ND  GH  GD V+   + +L         +
Sbjct: 337 LRSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVANEGAL 396

Query: 173 GRLGGEEFAAAALGSS-EQEAAILANDL-RKIIENSQINISSGPSIHITISAGIA-ERCH 229
            R+GG+EF     G + E+ A  LA  + R   E   +    G S  +  S GIA     
Sbjct: 397 ARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPFDVR---GSSFVLHASIGIALHSVE 453

Query: 230 KEPISTIIYRADQALYVAKKSGRN 253
            E    ++ +AD A+Y AK +G+N
Sbjct: 454 NESEIDLLKKADLAMYSAKDAGKN 477


>gi|77456920|ref|YP_346425.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1]
 gi|77380923|gb|ABA72436.1| putative GGDEF domain signalling-related membrane protein
           [Pseudomonas fluorescens Pf0-1]
          Length = 422

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 79/156 (50%), Gaps = 12/156 (7%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N + F       + S    NE+++++F D D FK INDNFGH  GD V+  ++
Sbjct: 250 DSLTGLPNRAFFEGRLIRALRSAHKLNERVAVLFLDSDRFKDINDNFGHAAGDAVLVAVA 309

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQINISSGPSIH 217
           +++         V RLGG+EFA       + E A    D  KI+   ++ I +    S+ 
Sbjct: 310 NRVRAQLREEDLVARLGGDEFAVLLTPLHKTEDAERIAD--KILASMDTPIALPGDSSVV 367

Query: 218 ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGR 252
            ++S GIA    H     T++  AD A+Y AK+  R
Sbjct: 368 TSLSIGIAVYPDHGVTPGTLLDAADAAMYQAKRLSR 403


>gi|330445298|ref|ZP_08308950.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489489|dbj|GAA03447.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 405

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 86/161 (53%), Gaps = 7/161 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFI--SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +++ +++  D L+GL N   F   S   S +++ +I   DID+FK++ND +GH  GD V+
Sbjct: 249 DKLYRMANQDALTGLWNRRYFFTHSCCQSESQQRNIAMIDIDFFKKVNDTYGHDGGDAVL 308

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +S +++        V R GGEEF     G+ +   A L   +R+ IE+  +      S
Sbjct: 309 ITVS-KIIDAHFPEAIVARFGGEEFCIKHCGNYQTFIATLEL-VRQRIESITVPYLE-QS 365

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           I +TIS G       E I  ++  AD  LY AK++GRN++V
Sbjct: 366 IEVTISIGATTGL--EDIDELLKIADDNLYSAKQNGRNQLV 404


>gi|319763724|ref|YP_004127661.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|317118285|gb|ADV00774.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
          Length = 526

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 79/183 (43%), Gaps = 28/183 (15%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           +L    +  S  +R D L+G LN      ++          +  L +   D+D FK IND
Sbjct: 354 QLRRDLDHASAQARHDPLTGALNRKGLDEAMEREIARAFRLDTPLCVALLDVDNFKAIND 413

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN----DLR 200
             GH  GD+ +  L      V      + R GGEEF             IL N    D  
Sbjct: 414 RLGHAAGDEALMHLVRVTREVMRPQDQLARHGGEEFVL-----------ILPNTQLADGV 462

Query: 201 KIIENSQINISS------GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           K +E  Q  ++          + IT SAG+A+   K   +  I RAD+ +Y+AK+SG+NR
Sbjct: 463 KAMERLQRELTKRYFLKEQERLLITFSAGVAQVEGKNGSADAIRRADEGMYLAKRSGKNR 522

Query: 255 VVC 257
           VV 
Sbjct: 523 VVA 525


>gi|257094976|ref|YP_003168617.1| PAS/PAC and GAF sensor-containing diguanylate
            cyclase/phosphodiesterase [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
 gi|257047500|gb|ACV36688.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Candidatus Accumulibacter phosphatis clade IIA str.
            UW-1]
          Length = 1399

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 84/177 (47%), Gaps = 23/177 (12%)

Query: 100  ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
            I +L+  D L+GL N S         ++      E L+++F D+D FK +ND+ GH VGD
Sbjct: 970  IQRLAHFDALTGLPNRSLLEERVRHDLARAHRGREALALMFVDLDRFKNVNDSLGHRVGD 1029

Query: 153  KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI------IENS 206
             ++  ++++L         V RLGG+EF      +    AA +A  L ++      IE  
Sbjct: 1030 ALLIQVAERLRRAVRDEDTVSRLGGDEFIVVLPSTDADGAAHVAAKLLEVMAPAYRIEQH 1089

Query: 207  QINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            ++  S        +SAGIA      E    +   AD A+Y AK+SGRN   CF   E
Sbjct: 1090 ELTCS--------LSAGIAMYPADGESFEALSMSADTAMYRAKQSGRN-AYCFFTAE 1137


>gi|261821440|ref|YP_003259546.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pectobacterium wasabiae WPP163]
 gi|261605453|gb|ACX87939.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pectobacterium wasabiae WPP163]
          Length = 722

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 102/200 (51%), Gaps = 23/200 (11%)

Query: 70  SLVIISITISLLLGYIS---GSILK---ELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           SLV + +++S+     +   G+IL+   E   +  R+  L+ +D L+GL N +   S+L 
Sbjct: 256 SLVPVELSVSMWEDNDNVSYGAILRDITERRRNEERLFLLAHMDPLTGLANRTLLTSNLE 315

Query: 124 S--YNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           +   NE  + I+  D+D FK +ND+ GH  GD ++  ++ ++     +   V R+GG+EF
Sbjct: 316 TALKNEPAVCIMMVDLDGFKDVNDSLGHSSGDDILVHVAKKIKATVRSGDVVARMGGDEF 375

Query: 181 AAAALGSSEQE-AAILANDL------RKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           A    G S+++ A  +A  +        II++ QINIS+     +    G+        +
Sbjct: 376 ALLFPGLSDKKVAGKIAEQIIHEISQAMIIDDHQINISASIGAVLYPEYGVT-------V 428

Query: 234 STIIYRADQALYVAKKSGRN 253
             ++  AD ALY AK  GRN
Sbjct: 429 QDLLTSADLALYQAKSEGRN 448


>gi|288940939|ref|YP_003443179.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
 gi|288896311|gb|ADC62147.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
          Length = 273

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 12/170 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQINDNFGHPVG 151
           + +++ +D L+G  +    +  LG + ++        L+++  D+D+FK++ND FGH  G
Sbjct: 102 LRRIASLDELTGT-HTRRHVLELGEHEQRRRARHGHDLALLMVDLDHFKRVNDGFGHAAG 160

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQINI 210
           D+V+      L          GR GGEEF A    +    A  +A  L  ++ EN    +
Sbjct: 161 DQVLRDFGFLLRSCLRKGDIAGRFGGEEFLAILPETDLATARSIAERLCDRVRENR--TL 218

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                + +T+S G+      E +   I RADQALY+AK++GR++V+  ++
Sbjct: 219 WKDHVLAVTVSIGLVTVHGDESLDKAIARADQALYLAKRAGRDQVMVGTE 268


>gi|167918107|ref|ZP_02505198.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei BCC215]
          Length = 772

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 16/204 (7%)

Query: 62  EYILVENLSLVIIS-ITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +Y    N+ L++   IT+++L   G  +G I K L      ++QL+  D L+GL N  A 
Sbjct: 278 DYHHTRNVYLLMTGFITLAMLAFFGVATGLIGK-LLGREREMTQLAEFDLLTGLANRYAT 336

Query: 119 ISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           + SL       S   +L+I+F D+D FK +ND  GH  GD V+   + +L         +
Sbjct: 337 LRSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVANEGAL 396

Query: 173 GRLGGEEFAAAALGSS-EQEAAILANDL-RKIIENSQINISSGPSIHITISAGIA-ERCH 229
            R+GG+EF     G + E+ A  LA  + R   E   +    G S  +  S GIA     
Sbjct: 397 ARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPFDVR---GSSFVLHASIGIALHSVE 453

Query: 230 KEPISTIIYRADQALYVAKKSGRN 253
            E    ++ +AD A+Y AK +G+N
Sbjct: 454 NESEIDLLKKADLAMYSAKDAGKN 477


>gi|90578929|ref|ZP_01234739.1| GGDEF family protein [Vibrio angustum S14]
 gi|90439762|gb|EAS64943.1| GGDEF family protein [Vibrio angustum S14]
          Length = 530

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 94/197 (47%), Gaps = 18/197 (9%)

Query: 72  VIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSY 125
           VIIS+ +  ++ +  G    I  +L +    +  L   D L+ L N  +F   I  + + 
Sbjct: 338 VIISVLVYFIVAFQRGEKERIEAQLNLKTKELQFLVNRDVLTKLRNRRSFNQYIDKMFNR 397

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AA 183
            +  ++V  DID FK INDN+GH  GD+ +  ++  +  +      + RLGG+EF+    
Sbjct: 398 EKPFALVSIDIDKFKSINDNYGHVFGDQALIHVATIVHDLLAKEDKLFRLGGDEFSIITQ 457

Query: 184 ALGSSEQEAAILANDLRKIIE--NSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
            +   E E  +      KI    N+ I    G  I+ ++S G A     + + T++ R D
Sbjct: 458 QINVPEIEQMLF-----KIFHAVNNTILQYKGNEIYCSLSIGAAISHDDDDVETLMTRTD 512

Query: 242 QALYVAKKSGRNRVVCF 258
            ALY +KK GRN   CF
Sbjct: 513 NALYESKKKGRN---CF 526


>gi|126452559|ref|YP_001065439.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106a]
 gi|134281056|ref|ZP_01767765.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 305]
 gi|167718680|ref|ZP_02401916.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei DM98]
 gi|167737694|ref|ZP_02410468.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 14]
 gi|167821655|ref|ZP_02453335.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 91]
 gi|167823299|ref|ZP_02454770.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 9]
 gi|167910079|ref|ZP_02497170.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 112]
 gi|226194367|ref|ZP_03789965.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei Pakistan 9]
 gi|237811449|ref|YP_002895900.1| diguanylate cyclase/phosphodiesterase [Burkholderia pseudomallei
           MSHR346]
 gi|242317424|ref|ZP_04816440.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106b]
 gi|254181306|ref|ZP_04887903.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1655]
 gi|254190675|ref|ZP_04897182.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254202487|ref|ZP_04908850.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei FMH]
 gi|126226201|gb|ABN89741.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106a]
 gi|134247362|gb|EBA47447.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 305]
 gi|147746734|gb|EDK53811.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei FMH]
 gi|157938350|gb|EDO94020.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|184211844|gb|EDU08887.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1655]
 gi|225933452|gb|EEH29441.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei Pakistan 9]
 gi|237504493|gb|ACQ96811.1| diguanylate cyclase/phosphodiesterase [Burkholderia pseudomallei
           MSHR346]
 gi|242140663|gb|EES27065.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106b]
          Length = 772

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 16/204 (7%)

Query: 62  EYILVENLSLVIIS-ITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +Y    N+ L++   IT+++L   G  +G I K L      ++QL+  D L+GL N  A 
Sbjct: 278 DYHHTRNVYLLMTGFITLAMLAFFGVATGLIGK-LLGREREMTQLAEFDLLTGLANRYAT 336

Query: 119 ISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           + SL       S   +L+I+F D+D FK +ND  GH  GD V+   + +L         +
Sbjct: 337 LRSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVANEGAL 396

Query: 173 GRLGGEEFAAAALGSS-EQEAAILANDL-RKIIENSQINISSGPSIHITISAGIA-ERCH 229
            R+GG+EF     G + E+ A  LA  + R   E   +    G S  +  S GIA     
Sbjct: 397 ARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPFDVR---GSSFVLHASIGIALHSVE 453

Query: 230 KEPISTIIYRADQALYVAKKSGRN 253
            E    ++ +AD A+Y AK +G+N
Sbjct: 454 NESEIDLLKKADLAMYSAKDAGKN 477


>gi|298571342|gb|ADI87685.1| hypothetical protein LW2_0100 [uncultured Nitrospirae bacterium
           MY2-3C]
          Length = 728

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 78/167 (46%), Gaps = 14/167 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           +  LS  D L+GL N      +L    ++       + I+  DID+FKQ ND FGH  GD
Sbjct: 549 LRNLSMRDPLTGLFNRRYMKETLELEWQRSLRKYVHIGIIMIDIDHFKQFNDTFGHDGGD 608

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---N 209
           +++  L   LV          R GGEEF      SS +     A  +R+   +  +    
Sbjct: 609 RLLCELGMFLVKHIRGGDIACRYGGEEFTIIMPESSLEVTTQRAEHIREAATHMHVMYKQ 668

Query: 210 ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S GP   IT+S G+A    H    + ++  AD ALY AK+ GRNRV
Sbjct: 669 QSLGP---ITLSLGVAVLPLHGSDTNAVLQAADAALYNAKRQGRNRV 712


>gi|168704869|ref|ZP_02737146.1| FHA domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 294

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 3/133 (2%)

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           +   LS++  DID FK IND+ GH  GD ++  L+  +           R GGEEF    
Sbjct: 161 HRRPLSVLALDIDKFKTINDSMGHLCGDFLLRELAGVVRESVRQEDLFARAGGEEFVVVL 220

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR--ADQ 242
           + +++ +A  +A  LR+ +   +    + P I +TIS G+A     E  +    R  ADQ
Sbjct: 221 VETTKDDALHVAERLREAVAAHEFRFEATP-IKMTISIGLASTVGDEVTTPHHLRQDADQ 279

Query: 243 ALYVAKKSGRNRV 255
            LY AK++GRNRV
Sbjct: 280 KLYEAKRTGRNRV 292


>gi|160897574|ref|YP_001563156.1| diguanylate cyclase [Delftia acidovorans SPH-1]
 gi|160363158|gb|ABX34771.1| diguanylate cyclase [Delftia acidovorans SPH-1]
          Length = 760

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 70/131 (53%), Gaps = 12/131 (9%)

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVI---AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           I+F D+D+F  +N   GH  GD+V+   A L D +V   G   +V RLGG+EFA    G+
Sbjct: 630 ILFLDLDHFAHVNQQGGHAAGDEVLCHMARLIDSVVRPLG---WVARLGGDEFAVLLAGT 686

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQAL 244
           S ++  +LA  L   +++ +     G    + +S G+     R H   +S+ +  AD A 
Sbjct: 687 SAEQGMLLAQSLCMAVQDWE-GAHEGQRYLMGVSVGMVVLDARQHT--VSSALRSADMAC 743

Query: 245 YVAKKSGRNRV 255
           Y AK+ GRNRV
Sbjct: 744 YAAKRKGRNRV 754


>gi|82701959|ref|YP_411525.1| diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis
           ATCC 25196]
 gi|82410024|gb|ABB74133.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosospira multiformis ATCC 25196]
          Length = 705

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 11/174 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S  RI  L+  D L+GL N +         I +   Y+ +L+++F DID FK +ND+ GH
Sbjct: 271 SQERIEYLAHYDSLTGLPNRTLLSDRLRIAIENARRYSIRLALLFVDIDRFKLVNDSLGH 330

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQ 207
            +GDK++  ++ ++         V R+GG+EF    L S  + A   A    K+I + SQ
Sbjct: 331 EIGDKLLKAVAQRMQSTVRQADTVSRVGGDEF--VVLLSRIETATDAARSAEKLITSISQ 388

Query: 208 INISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                   + +T S GI+    + +  S++   AD A+Y AK  GRNR   +S+
Sbjct: 389 PYQIEEHELLLTASIGISIYPDNGKDASSLTRNADAAMYSAKGQGRNRYQFYSE 442


>gi|51894025|ref|YP_076716.1| hypothetical protein STH2889 [Symbiobacterium thermophilum IAM
           14863]
 gi|51857714|dbj|BAD41872.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 219

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 83/163 (50%), Gaps = 9/163 (5%)

Query: 106 IDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +D LSG+L    F  ++    +  E +S+   D+D F++IN   G   GDK+IA L   L
Sbjct: 15  VDALSGILTRQPFWEAIRKALTEEETVSLASLDLDGFEEINAQAGRETGDKLIALLGGML 74

Query: 163 VVVFGTPMF-VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                +  + VGR+GG+EFA    G+  ++A +    LR     S       P ++ TIS
Sbjct: 75  RERADSLGWTVGRIGGDEFAILMPGTGLEKAFLQMETLRADFAASAAQAY--PELNPTIS 132

Query: 222 AGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            G+A   R  K+ +  +  +A QALY AK++GRN V   S  E
Sbjct: 133 IGVANFPRDAKD-LGGLTQQAGQALYQAKEAGRNSVALPSREE 174


>gi|330501559|ref|YP_004378428.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
 gi|328915845|gb|AEB56676.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
          Length = 901

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 8/180 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQIND 144
           + E  ++  RI +L+  D L+ L N  +FI SL         + L ++  DID FK+IND
Sbjct: 455 ITEAKLAQQRIERLAYTDNLTNLGNRPSFIRSLEERFARHTQQSLGLLLVDIDNFKRIND 514

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH  GDK+++ L+ +L    G    + R    EFA    G  +     +A+ + + ++
Sbjct: 515 SLGHQTGDKLLSALARRLRNSLGAKGTLARFASNEFAILLDGCDQDSGLRVAHQVLQTLD 574

Query: 205 NSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                      I IT S G+A    H +   T++  A  AL+ AK +G+++V  F+++ N
Sbjct: 575 KPL--FVDNQLISITGSVGLAIAPDHGDDPQTLMKHAGLALHKAKANGKHQVQLFTEVLN 632


>gi|300024581|ref|YP_003757192.1| diguanylate cyclase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526402|gb|ADJ24871.1| diguanylate cyclase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 371

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 9/184 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           S + +++L  S +    L  +D ++ L N     ++L          NE L ++  D+D+
Sbjct: 188 SQTQIEKLRSSLSESQYLGMLDAVTQLKNRHWLEANLPREVKAASELNEPLCLIMADVDH 247

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND FGH VGD+++    + L           R GGEEF      +  + A  L   
Sbjct: 248 FKKINDTFGHTVGDEILRRFGELLSKNIKGRDTAVRYGGEEFVVLLPQTQIEGADNLGEQ 307

Query: 199 LRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +R  ++  +   + +  P   +T S GIAE    +   +++ RAD  LY AK  GRN V 
Sbjct: 308 IRDELQRKKWMHHRTGKPIGTVTASFGIAELRPGDGPESLLERADAKLYEAKADGRNCVK 367

Query: 257 CFSD 260
             SD
Sbjct: 368 SDSD 371


>gi|241765463|ref|ZP_04763430.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
 gi|241364773|gb|EER59762.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
          Length = 346

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 87/194 (44%), Gaps = 35/194 (18%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------------------------NE 127
           ++ +Y  +   S  D L+GL N   F      +                          +
Sbjct: 142 VYQNYQSLLDYSERDALTGLFNRKTFDEQFSRHTAPAVALRAQGGAAGDDGAACCEPIEQ 201

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            L++V  DID+FKQ+ND FGH  GD+V+  +++ L   F +   + R GGEEF      +
Sbjct: 202 WLAVV--DIDHFKQVNDRFGHLYGDEVLILVANILRNSFRSHDRIFRFGGEEFVVLLRST 259

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYV 246
               A  + N  R  ++         P +  +T+S G        P+  I+ +ADQALY 
Sbjct: 260 DLSTAHKVFNRFRLAVQEYPF-----PQVGQVTVSVGFVSTSKGSPVE-ILGQADQALYH 313

Query: 247 AKKSGRNRVVCFSD 260
           AK++GRN+ VCF D
Sbjct: 314 AKENGRNQ-VCFYD 326


>gi|238764317|ref|ZP_04625268.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia kristensenii ATCC 33638]
 gi|238697468|gb|EEP90234.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia kristensenii ATCC 33638]
          Length = 614

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + +   +  R+  L+  D ++GL N  A    + S      +  + I++ D+D FK
Sbjct: 168 SGTDITKERRAQERLRILANTDMITGLPNRHAIHERINSVIQTRGDTSVGIIYLDLDNFK 227

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILA 196
           ++ND++GH  GD+++  +S  ++   G    + RLGG+EF     +A +   E     + 
Sbjct: 228 KVNDHYGHMFGDRLLKDVSLAILSCLGDNEMLARLGGDEFIVLVESATMNLLETTTQRIL 287

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           N ++       I + +G SI I +        H + +  II  AD A+Y AK+ G+    
Sbjct: 288 NRMKLPFRVGLIEVYTGCSIGIALCPE-----HGDTLENIIRSADTAMYTAKEHGKQTYS 342

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 343 IFSQQMNK 350


>gi|209515854|ref|ZP_03264716.1| diguanylate cyclase [Burkholderia sp. H160]
 gi|209503702|gb|EEA03696.1| diguanylate cyclase [Burkholderia sp. H160]
          Length = 535

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 92/198 (46%), Gaps = 15/198 (7%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-- 128
           ++I  I + +L  ++   + +   + +  + +L+  D L+GL N  A   +L     +  
Sbjct: 336 MLIFGIGVIVLSAWLGAELRRRQRVEHE-LERLAGTDGLTGLPNRRALCETLDREWLRAR 394

Query: 129 -----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAA 182
                LS++F DID+FK  ND +GH  GD  +  ++  +  V   P   VGR GGEEF  
Sbjct: 395 RTGSILSLLFVDIDHFKAYNDTYGHQAGDVALTAVARCIRRVIQRPGDCVGRYGGEEFIV 454

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST----IIY 238
               +    A ++  ++R  I   ++ I         ++A I     +  + T    +I 
Sbjct: 455 VLPDTDVPGAGVVGENIRAAI--GELGIEHVGCKFGRVTASIGATTWRPDLDTDVSVVIR 512

Query: 239 RADQALYVAKKSGRNRVV 256
            AD+ALY AK  GRN VV
Sbjct: 513 AADEALYTAKAGGRNLVV 530


>gi|157364814|ref|YP_001471581.1| diguanylate cyclase with PAS/PAC sensor [Thermotoga lettingae TMO]
 gi|157315418|gb|ABV34517.1| diguanylate cyclase with PAS/PAC sensor [Thermotoga lettingae TMO]
          Length = 466

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 79/155 (50%), Gaps = 12/155 (7%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+GL N           +SS     + +S+++ D+  FK+IND +GH  GDKV+
Sbjct: 304 LSYHDPLTGLPNRRMLEEEAERILSSSNRSGKTVSVIYIDLMGFKKINDQYGHSTGDKVL 363

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGP 214
           + ++ +L        FV RLGG+EF     G+  + A  L   + ++IE  +   I  G 
Sbjct: 364 SVVAKRLKKCMRKSDFVARLGGDEFVFLLPGTPARLAVKL---IERVIEQIETPIIQEGK 420

Query: 215 SIHITISAGIAERCHKEP-ISTIIYRADQALYVAK 248
            + I+ +AGIAE          I+  AD+A+Y AK
Sbjct: 421 KLKISANAGIAEYPKDGGYFEKILRNADRAMYHAK 455


>gi|126699999|ref|YP_001088896.1| putative signaling protein [Clostridium difficile 630]
 gi|115251436|emb|CAJ69269.1| putative diguanylate cyclase signaling protein [Clostridium
           difficile]
          Length = 632

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 14/164 (8%)

Query: 107 DCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+ L N       L    G+ ++ +  +  DID FK  NDN+GH  GDKVI  ++D +
Sbjct: 467 DGLTKLYNRRYLEQQLDLFNGTRDKNMVAILVDIDCFKSYNDNYGHLAGDKVIVKVTDII 526

Query: 163 VVVF-GTPMFVGRLGGEEF-----AAAALGSSE-QEAAILANDLRKIIENSQI-NISSGP 214
             VF      + R GGEE      +  ++G  E     +    + K++E   I +I S  
Sbjct: 527 RSVFIDITEHIIRYGGEEILILVDSIESIGVEEIDNIELYIKRVFKLLEFEGIEHIYSKI 586

Query: 215 SIHITISAGIA-ERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
             +ITISAG++ +RC  ++ +  +I  AD+ LY +KK+GRN+ +
Sbjct: 587 KNYITISAGVSIKRCRSRKDVEMLIEDADKNLYKSKKAGRNQYI 630


>gi|89092334|ref|ZP_01165288.1| multisensor diguanylate cyclase/phophodiesterase [Oceanospirillum
           sp. MED92]
 gi|89083422|gb|EAR62640.1| multisensor diguanylate cyclase/phophodiesterase [Oceanospirillum
           sp. MED92]
          Length = 852

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 17/175 (9%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
            +I + +  D L+GL N + F  SL           +K ++++ D+D FKQ+ND  GH +
Sbjct: 414 QKIWRQANFDQLTGLANRNYFTDSLSHTIDLAERQGDKFALLYIDLDRFKQVNDTLGHSM 473

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDK++   + +L         + RL G+EFA    G+   E  ++   + K++ +     
Sbjct: 474 GDKLLNDAAKRLKENSRKSDIIARLAGDEFAILLSGTGRPE--VIEPLVTKLLNSLAAPY 531

Query: 211 S-SGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             SG    I+ S GIA    + C    ++ ++ +AD A+Y AK+ GRN    F++
Sbjct: 532 DLSGNETTISASIGIALFPEDGCE---VADLLRKADSAMYKAKEDGRNNFHFFTE 583


>gi|94495787|ref|ZP_01302366.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingomonas sp. SKA58]
 gi|94424479|gb|EAT09501.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingomonas sp. SKA58]
          Length = 854

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 87/177 (49%), Gaps = 13/177 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDID 137
           SG+ L E+  S   +++L++ D L+GL N    + SL        G   E  +++  D+D
Sbjct: 311 SGTDLTEMRRSQAEVTRLAQYDSLTGLANRIQMLRSLEQAVAARHGRPGE-CTLMMLDLD 369

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND+ GHP GD ++  +S +L  V G    VGR GG+EF    L     + + L  
Sbjct: 370 RFKSVNDSLGHPAGDTLLRQVSQRLQRVVGEKGLVGRQGGDEF--KILLPRHHDKSSLEL 427

Query: 198 DLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGR 252
             + II   ++     G S+ I +S G++        +  + R AD ALY AK  GR
Sbjct: 428 LAKAIIATVAEPYTIEGTSVVIGVSIGVSMSPQDGVTAEALIRNADLALYAAKGDGR 484


>gi|78063420|ref|YP_373328.1| RNase II stability modulator [Burkholderia sp. 383]
 gi|77971305|gb|ABB12684.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. 383]
          Length = 667

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 17/186 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDID 137
           SG  + E   +  R+S+L+  D L+GL N        H+A  +   +   ++ I+F D+D
Sbjct: 218 SGIDITEERSAQQRLSELANTDVLTGLPNRHAISERIHAAIAAETAATRGQVGILFLDLD 277

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSS---EQEAA 193
            FK++ND++GH  GD+++  +S  +     +   + RLGG+EF      G+    E  A 
Sbjct: 278 NFKRVNDHYGHITGDRLLQDVSAIISGCLPSGATLARLGGDEFLVLFEHGTRPLLEATAQ 337

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           I+   LR  I    + + +  SI I +        H + + T+I  AD A+YVAK+ G++
Sbjct: 338 IILERLRTPIHLGLMEVYTSCSIGIAMHP-----QHGDSLETLIRSADTAMYVAKEEGKH 392

Query: 254 RVVCFS 259
               FS
Sbjct: 393 TYRVFS 398


>gi|311108684|ref|YP_003981537.1| diguanylate cyclase [Achromobacter xylosoxidans A8]
 gi|310763373|gb|ADP18822.1| diguanylate cyclase, GGDEF domain protein 16 [Achromobacter
           xylosoxidans A8]
          Length = 404

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 105/231 (45%), Gaps = 16/231 (6%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96
           +FIA V+    I      + P    E+      S+  I I  + LLG I  +    +  S
Sbjct: 151 LFIALVLTGQCILYLAAPIAPLATGEW----RTSVWGILIQYTGLLGSIVLTFAVFIATS 206

Query: 97  YNRISQLSR---IDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDN 145
           Y+ I +  R    D L+GLLN     + L S + +L        +++  DID FK+IND+
Sbjct: 207 YDAIEKYRRHAHTDALTGLLNRQGLDNLLASASGRLFSDAAAPAALIMADIDNFKRINDD 266

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GD V+A     L       +   RLGGEEF      ++ + A  +A D+R     
Sbjct: 267 FGHAFGDMVLARFGALLRPQAAPHIHAARLGGEEFLLLLPAANLESATAIAEDIRTSFV- 325

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +Q      P+   T S G+      EP ++ + RAD  LY AK+ GRN  V
Sbjct: 326 AQRWAPQVPNSRFTASMGVTLMRAGEPFASALKRADDLLYEAKRRGRNCTV 376


>gi|310659136|ref|YP_003936857.1| diguanylate cyclase/phosphodiesterase [Clostridium sticklandii DSM
           519]
 gi|308825914|emb|CBH21952.1| Diguanylate cyclase/phosphodiesterase precursor (fragment)
           [Clostridium sticklandii]
          Length = 591

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 20/171 (11%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIA 156
           I  ++  D L+ L N  +F+  L S  E     +I+F DID FK IND  GH  GD+++ 
Sbjct: 165 IEHMAYNDELTNLPNRRSFMERLSSELESKKEGAIIFLDIDNFKAINDTLGHVHGDELLN 224

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI------IENSQINI 210
            ++ +L ++ G   F+ R GG+EF      + ++    LA  +  I      + N++IN+
Sbjct: 225 RVAYRLKLLLGANAFISRFGGDEFLILISDTDKESVENLAKSINDIFDEPFLLNNNKINV 284

Query: 211 --SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             S G + +   S+ I E         +I  AD A+Y  K +GRN    F 
Sbjct: 285 DFSMGITFYPKDSSDINE---------LIMNADTAMYQVKATGRNHYKFFD 326


>gi|293611456|ref|ZP_06693751.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826240|gb|EFF84610.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 407

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 18/187 (9%)

Query: 82  LGYISGSILKELFISYNRISQLSRI-------DCLSGLLNHSAFISSL------GSYNEK 128
           L  +   +L+E+ I  N++ + +R        D L+ L N   F   L        ++ K
Sbjct: 216 LNTVFNELLEEIQIWDNQLQKENRKLSFQAHHDQLTLLPNRHYFYQILLDMFEDKGFDNK 275

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALG 186
            +++F D + FK IND FGH  GD+V+  ++++L        F+ RLGG+EFA    ++ 
Sbjct: 276 SALLFIDNNNFKAINDQFGHLAGDEVLKEMANRLQTRLRHQDFIARLGGDEFAVILHSIS 335

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
            ++   +I  N L    E   +N   G +I+ + S GIA           I +ADQA+Y 
Sbjct: 336 HADHLISIAENLLESCKEPLHLN---GQTIYFSFSVGIALSQFASSPEDFIMQADQAMYK 392

Query: 247 AKKSGRN 253
           AK S  +
Sbjct: 393 AKNSDEH 399


>gi|126656793|ref|ZP_01728007.1| hypothetical protein CY0110_24181 [Cyanothece sp. CCY0110]
 gi|126622013|gb|EAZ92721.1| hypothetical protein CY0110_24181 [Cyanothece sp. CCY0110]
          Length = 291

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 22/178 (12%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           +L EL  +Y R  + +RID L+G +N   F       I  L  YN   ++ +FD+D FK 
Sbjct: 109 LLSELKAAYEREKKSARIDSLTGSVNRRFFREVLQKEIKRLSRYNHPFTLAYFDVDNFKI 168

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD ++  ++D + +       + RLGG+EFA   L    + A  + N ++ 
Sbjct: 169 VNDQLGHNQGDYLLKAIADIIKMSIRQTDTLARLGGDEFALILLEIDYERANGVLNRIKT 228

Query: 202 ------IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
                  +E   I+ S G   + TI          E +   I   D  +Y  K +G+N
Sbjct: 229 ELLVMAKLEKLPISFSIGAITYYTIP---------ESVDRAIEEVDHLMYDIKNNGKN 277


>gi|114705050|ref|ZP_01437958.1| hypothetical protein FP2506_08936 [Fulvimarina pelagi HTCC2506]
 gi|114539835|gb|EAU42955.1| hypothetical protein FP2506_08936 [Fulvimarina pelagi HTCC2506]
          Length = 684

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 100/196 (51%), Gaps = 14/196 (7%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNE 127
           ++V I+I + +LL +        + +   R+++   +D L+G+ N   F   +     + 
Sbjct: 220 AIVGIAIGLCVLLVW-------RIVVQNRRLARAVGLDGLTGIGNRVGFDRHVAGLPKDA 272

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
             +I+ FD+D FK IND  GH +GD+++  ++ ++  +     FV R+GG+EFA    G 
Sbjct: 273 DCAIILFDLDNFKSINDGLGHHIGDELLRTVASRVREICHDDEFVCRIGGDEFAVVLSGK 332

Query: 188 SEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPIS--TIIYRADQAL 244
           +      +A   R I++   + I  G   + I+ S GI++      IS  ++  +AD AL
Sbjct: 333 TAVARGEVA--CRHILQAIAVPIIIGKQRLDISASVGISKLPSPAGISIESLTRQADAAL 390

Query: 245 YVAKKSGRNRVVCFSD 260
           Y AK +GR R   +S+
Sbjct: 391 YAAKNAGRGRYRVYSE 406


>gi|34498882|ref|NP_903097.1| hypothetical protein CV_3427 [Chromobacterium violaceum ATCC 12472]
 gi|34104733|gb|AAQ61090.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 662

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 90/170 (52%), Gaps = 11/170 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           R S L+  D L+GL N +   S L  +         +++++F D+D FK +ND+ GH  G
Sbjct: 238 RASFLANHDVLTGLPNRNGIRSELLPHLQQALRNGRQVALMFIDLDRFKNVNDSLGHACG 297

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  ++ +LV + G      RLGG+EF    + S+ Q A       R+I++   + + 
Sbjct: 298 DELLIRMAGRLVGLLGHDEKAARLGGDEF--LVMLSAPQVAERAEALARRILQALSVPMR 355

Query: 212 -SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
             G  + ++ S GI+    +E  +  ++  AD A+Y AK +GRN ++ F+
Sbjct: 356 LEGMDVGVSASIGISVCEGRELDLEQMMRHADLAMYAAKDAGRNNLMFFT 405


>gi|90424616|ref|YP_532986.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
 gi|90106630|gb|ABD88667.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
          Length = 823

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 55/163 (33%), Positives = 84/163 (51%), Gaps = 13/163 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I+ ++  D L+ L N  ++   L          N K++++  D+D FK +ND+FGHP G
Sbjct: 389 KIAFMAHHDGLTNLPNRGSYQEHLHQALELSRRCNSKVAVLCVDLDLFKNVNDSFGHPTG 448

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS--SEQEAAILANDLRKIIENSQIN 209
           D+++  ++D+L    G    V RLGG+EF A  LG+  S  EA+  A  L +I+  S   
Sbjct: 449 DRLLQKVADRLRQQVGGNDLVARLGGDEF-AIVLGAINSPNEASDFAAKLIEIL--SVPY 505

Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSG 251
              GP + I  S GIA      +    ++  AD ALY AK  G
Sbjct: 506 DMDGPEVVIGASIGIALSPGDGDDGEELLRNADMALYRAKAEG 548


>gi|119773572|ref|YP_926312.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119766072|gb|ABL98642.1| response regulator receiver protein [Shewanella amazonensis SB2B]
          Length = 303

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 11/170 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R++ L+  D L+GL N    +  L        +    +S+V  D+D+FKQ ND +GH  
Sbjct: 131 QRLTALAATDYLTGLANRRTLMEVLEKQWRQCLARRHPISVVIVDVDFFKQFNDLYGHLK 190

Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD+ +  ++  L     +P     R GGEEF     G +   A ++A  + + +    I 
Sbjct: 191 GDECLRQIAAALASTLPSPQCLAARFGGEEFVLLLPGFNAAMAELIARQVSEAVAAIDIA 250

Query: 210 ISSGPS-IHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256
               P    +T+S GIA     +      ++  AD ALY AK+ GRN+++
Sbjct: 251 AMGLPQGALLTVSQGIACEISGQFRTADAMLLGADTALYRAKREGRNKII 300


>gi|329910008|ref|ZP_08275190.1| hypothetical protein IMCC9480_42 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546318|gb|EGF31340.1| hypothetical protein IMCC9480_42 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 1185

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 8/169 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++ L+  D L+GLLN   F       ++S    +++ ++++ D+D FK +ND  GH  G
Sbjct: 761 QMTHLAAHDALTGLLNRREFEHRLEQAVASASRDSQEHTVMYLDLDQFKIVNDTCGHVAG 820

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  L+  L         + RLGG+EF           A  +A  LR+ + +    + 
Sbjct: 821 DELLRQLTTLLHAKLRQSDTLARLGGDEFGVLLEQCGTAPALRVAEQLRQTVSDFHF-VW 879

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              S  I +S G+           I+  AD A YVAK  GRNRV  +S+
Sbjct: 880 LDKSFPIGVSIGLVTFGAGMTTPDILRMADSACYVAKDKGRNRVHVYSE 928


>gi|298488828|ref|ZP_07006854.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
            savastanoi NCPPB 3335]
 gi|298156628|gb|EFH97722.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
            savastanoi NCPPB 3335]
          Length = 1198

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 92/177 (51%), Gaps = 11/177 (6%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEK----LSIVFFDIDYFK 140
            S + E   S +RI +L+  D L+ L N + F   L S   + E+    + ++F D+D FK
Sbjct: 827  SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQAWVVLMFLDLDRFK 886

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDL 199
             IND+ GH  GD+++  ++ +L+    +   V R+GG+EF       + +EAA+  A  +
Sbjct: 887  PINDSLGHAAGDRMLQEMATRLLACVSSDDTVARMGGDEFTLLLQPDTSREAALTRAIHV 946

Query: 200  RKIIENSQIN--ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
             + I  S I   +  G    +T S GIA      + +S ++  AD A+Y AK+ G+N
Sbjct: 947  AERILTSLITPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKN 1003


>gi|115524099|ref|YP_781010.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
 gi|115518046|gb|ABJ06030.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
          Length = 928

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 18/166 (10%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           RI+ ++  D L+ L N   F   L S       +++L++ + DID FK +ND+ GH +GD
Sbjct: 495 RIAHMAHYDALTDLPNRVLFHERLESALDAREPDDQLAVFYIDIDQFKSVNDSLGHSIGD 554

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
           +++  ++D+L        F  R+GG+EFA        Q A   A D   ++E     I  
Sbjct: 555 ELLKIVADRLRGCLAATDFAARIGGDEFAII------QTAVAKATDTTDLVERIYAAIRK 608

Query: 212 ----SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252
               +G  +    S GIA    H   +  ++  AD A+Y AK  GR
Sbjct: 609 PYDCAGHLLTADASIGIALAPQHGANLDQLLKNADLAMYGAKAEGR 654


>gi|209546696|ref|YP_002278614.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537940|gb|ACI57874.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 648

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 12/164 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSL----GSYNEKLS---IVFFDIDYFKQINDNFGHPVGDKV 154
           +LS  D L+G+ N  A    L     ++ ++     ++  D+D+FK+ ND +GH  GD+ 
Sbjct: 225 ELSNTDYLTGISNRRALDRRLDECWAAWKDERRDFVVLLIDVDFFKRFNDRYGHQEGDRC 284

Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  ++  L  VV  +   +GR GGEEF       + + A  LA  +R  +E   I     
Sbjct: 285 LTVIAKVLKAVVESSGGMIGRYGGEEFIVVLPVQTPKIAMSLAEKIRMEVEFLAIEHDGR 344

Query: 214 P--SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
           P  S  +T+S G+A       E +  ++  AD ALY AK SGRN
Sbjct: 345 PDDSPIVTVSIGVAFTRDNVGEKVERLVREADLALYHAKASGRN 388


>gi|237735029|ref|ZP_04565510.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229381805|gb|EEO31896.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 976

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 105/229 (45%), Gaps = 23/229 (10%)

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLL--------LGYISGSILKELFISYNRIS 101
           LF  G+T  Y     L        +S TI LL         G++    + +  I    + 
Sbjct: 45  LFEQGITEVYCEYRSLNATQKQGWVSTTIHLLHVGETNKLFGFVYVKDINDKKIHELELL 104

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-NEKL----SIVFFDIDYFKQINDNFGHPVGDKVIA 156
           + S+ D L+ L N +AF   +  Y N+K     +++  DID FK INDN GH  GD V+ 
Sbjct: 105 RQSQSDPLTKLYNRTAFGQIVNEYLNKKRESSSALLLIDIDNFKNINDNLGHSFGDTVLC 164

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSE---QEAAILANDLRKIIENSQINIS 211
            ++ +L  +F     +GR GG+EF      + S +    +A+I+  +L     ++    +
Sbjct: 165 EIAHKLTNIFNNKAIIGRYGGDEFIIFIKDIPSKKYVYHKASIILEELHLYYSSNYQEYT 224

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              SI IT S    +  H+     +  + D ALY AKK G+++   F+D
Sbjct: 225 ISSSIGITFSPDDGKTLHE-----LFEQTDSALYRAKKLGKSQYFAFND 268



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 13/125 (10%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI----DCLSGLLNHSAF 118
           YI V+N S+   +I    LL  I+ SI+ E  I   R+ + ++     D LSGLLN ++F
Sbjct: 532 YIGVDNPSINQNTIA---LLDSINFSIVNE--IKKRRLYEKTQYNLYHDNLSGLLNRNSF 586

Query: 119 ISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
              L   N  +    ++  DI+  K+IN +FGH  GDK+I  +S  +   F +   + RL
Sbjct: 587 TQFLSYENSAVYSQGVILADINGLKEINRDFGHYHGDKIITIISSIMNSYFPSEK-IFRL 645

Query: 176 GGEEF 180
            G+EF
Sbjct: 646 SGDEF 650


>gi|116695986|ref|YP_841562.1| response regulator [Ralstonia eutropha H16]
 gi|113530485|emb|CAJ96832.1| response regulator containing a GGDEF effector domain [Ralstonia
           eutropha H16]
          Length = 339

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 19/181 (10%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+GL N   F   LG+          +++++  D+D FK  N
Sbjct: 159 QQLLETNLELQRLTNSDGLTGLSNRRYFDEYLGAEWRRALREQTQVALLMIDVDAFKAYN 218

Query: 144 DNFGHPVGDKVI----AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           D +GH  GD+V+    A + D  V     P    R GGEEFA     +S     +LA  +
Sbjct: 219 DTYGHVAGDEVLRRVAAVIRDNCVRPTDLP---ARFGGEEFAMVLPATSPGGVRLLAEKV 275

Query: 200 RKIIENSQINISSGPSIH-ITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           R+ ++   I     P+   +T+S G A    +  + P + ++  AD  LY AK++GRN+V
Sbjct: 276 RRAVQGLAIAHGGSPTADCVTVSIGGAVLVPQPDQAP-NQVVEAADAGLYQAKRNGRNQV 334

Query: 256 V 256
           +
Sbjct: 335 M 335


>gi|17980444|gb|AAL50635.1|AF418998_1 bacteriophytochrome [Rhodobacter sphaeroides]
          Length = 1016

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-IVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +++L   D L+GL N S     L    +  + ++F D+D FK +ND+ GH VGD ++  +
Sbjct: 591 LARLRHYDPLTGLANRSYLQERLAQDGQSAAALLFIDLDRFKAVNDSMGHGVGDGLLIEV 650

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  LV        V RLGG+EF              LA  LR+++E  Q    +G   HI
Sbjct: 651 ARSLVATVRPHDLVVRLGGDEFVVLCHRLDAAGIVSLAERLRQVLE--QPFEVAGRKCHI 708

Query: 219 TISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNR 254
           + S GIA     + I    ++  AD A+Y AKK+G NR
Sbjct: 709 SASIGIA---MADSIGDLDLVRAADIAMYAAKKNGGNR 743


>gi|77404812|ref|YP_345384.1| diguanylate cyclase/phosphodiesterase with phytochrome (GAF) sensor
           [Rhodobacter sphaeroides 2.4.1]
 gi|77390462|gb|ABA81643.1| Phytochrome sensor diguanylate cyclase/phosphodiesterase
           [Rhodobacter sphaeroides 2.4.1]
          Length = 980

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-IVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +++L   D L+GL N S     L    +  + ++F D+D FK +ND+ GH VGD ++  +
Sbjct: 555 LARLRHYDPLTGLANRSYLQERLAQDGQSAAALLFIDLDRFKAVNDSMGHGVGDGLLIEV 614

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  LV        V RLGG+EF              LA  LR+++E  Q    +G   HI
Sbjct: 615 ARSLVATVRPHDLVVRLGGDEFVVLCHRLDAAGIVSLAERLRQVLE--QPFEVAGRKCHI 672

Query: 219 TISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNR 254
           + S GIA     + I    ++  AD A+Y AKK+G NR
Sbjct: 673 SASIGIA---MADSIGDLDLVRAADIAMYAAKKNGGNR 707


>gi|34496603|ref|NP_900818.1| hypothetical protein CV_1148 [Chromobacterium violaceum ATCC 12472]
 gi|34102457|gb|AAQ58823.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 795

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 92/179 (51%), Gaps = 12/179 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148
           +  R+  L+  D L+ L N S   +SL          + +L+++F D+D FK IND+FGH
Sbjct: 355 AEERLQFLANHDPLTRLPNRSRLTASLDEALTRMDGEDGRLAVMFIDLDRFKLINDSFGH 414

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQ 207
            VGD+++  ++ +L  V G    + RLGG+EF     G  S  + A +A+D+   +   +
Sbjct: 415 QVGDQLLCEIAIRLSRVVGERGMLARLGGDEFTLLMSGFDSHHQLADMASDILAAL--GK 472

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                   + IT S GI+   H      T++  AD A+Y AK++G+N    F DI  NT
Sbjct: 473 PLCLEAHEVFITGSIGISVFPHDGRDARTLLKNADVAMYRAKEAGKN-TYQFFDIGMNT 530


>gi|107100085|ref|ZP_01364003.1| hypothetical protein PaerPA_01001106 [Pseudomonas aeruginosa PACS2]
          Length = 353

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 117/280 (41%), Gaps = 40/280 (14%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYF--SIFFSIF-IATVIFIANIFLFYIGLTPFYGLEYI 64
           +L+ +L H  +L      TFM+++  ++ F +F +   +F     L +I  +  Y +E +
Sbjct: 71  WLTYFLYHVDSLRG----TFMVFYVLALLFGVFQLPPRVFARCAALAFIAFSGIYLVEAL 126

Query: 65  ----------LVENLSLVIISITISLLLGYISGSILKELFISY-------------NRIS 101
                      ++ L + I+ + +SL   YI     +     Y              ++ 
Sbjct: 127 QQRLELPGRAALQVLVMFIVMVWLSLFASYIQAMRQRMRQRRYALQAHQDTLRGMMRQLE 186

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQINDNFGHPVGDKVI 155
            L   D L+GL N   F+       E L       +   D+D+FK+IND  GH  GD+V+
Sbjct: 187 DLVATDELTGLFNRRHFMRMASRALEDLLPNRQHGLALIDLDHFKRINDRHGHAAGDRVL 246

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +            + R GGEEF      +  ++       LR   + ++     G +
Sbjct: 247 QTFAAVARSCLRDGDVLARYGGEEFVLLLPHADAEQLESCCERLRLAFQQAE---PVGVT 303

Query: 216 IH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +  +++S G+      + +   + RADQALY AK+ GRNR
Sbjct: 304 VDTLSLSVGMTLLYADDDLDEALQRADQALYRAKRGGRNR 343


>gi|330467937|ref|YP_004405680.1| diguanylate cyclase [Verrucosispora maris AB-18-032]
 gi|328810908|gb|AEB45080.1| diguanylate cyclase [Verrucosispora maris AB-18-032]
          Length = 215

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 79/155 (50%), Gaps = 9/155 (5%)

Query: 107 DCLSGLLNHSAF---ISSLGSYN--EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GL N  AF    ++L + N    L  V  D+D FKQIND +GH  GDKV+  ++++
Sbjct: 51  DPLTGLPNRRAFYRLAAALLTDNAGRPLVAVVLDLDNFKQINDRYGHSAGDKVLISVAER 110

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHITI 220
           L   F     V RLGG+EF A  L S   +   L +   ++ E     I  G  ++ +T 
Sbjct: 111 L-ATFAGDNLVARLGGDEF-AGLLASPTVDHRWLDHATGRLYEMLAAPIPLGAATVRVTA 168

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S G+A   H   ++  + RAD A+Y AK  G  R 
Sbjct: 169 SVGLAP-VHGTQLTEALDRADAAMYEAKAIGAARA 202


>gi|323497948|ref|ZP_08102957.1| hypothetical protein VISI1226_07897 [Vibrio sinaloensis DSM 21326]
 gi|323316993|gb|EGA69995.1| hypothetical protein VISI1226_07897 [Vibrio sinaloensis DSM 21326]
          Length = 404

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 7/155 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +++  D L+GL N     +   S  E+ SI   DID+FK +ND++GH  GD  +  +++ 
Sbjct: 253 RMANQDALTGLWNRRFLFNQDCSGCEERSIAMLDIDHFKGVNDSYGHDGGDAALITVANI 312

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L + F   + V R GGEEF   +  + + E       +R+ IE + I       I++TIS
Sbjct: 313 LKIYFPDDVVV-RFGGEEFCIQSC-TEQGEFVTRLEKMRQRIEKTPIK-HKDKQINVTIS 369

Query: 222 AGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
            G+   C ++  +   I  AD  LY AK+ GRN++
Sbjct: 370 IGV---CSEQGSLEEQIKIADDRLYKAKEDGRNQL 401


>gi|158337434|ref|YP_001518609.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158307675|gb|ABW29292.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
          Length = 414

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 90/169 (53%), Gaps = 13/169 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++L+ +D L+ L N   F          +    + L+++  D DYFK+ ND +GH  GD
Sbjct: 235 LNRLAHLDGLTELANRRCFDQVLEQEWRRMQRQQKPLALIMCDADYFKRFNDAYGHQAGD 294

Query: 153 KVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
             +  ++  +   V  T     R GGEEFA     +  ++A ++A  +++ + + +I ++
Sbjct: 295 HCLQKIACVINANVRRTGDLATRYGGEEFAVIMPNTDHKQACLVAEKIQRAMLDLRIEHL 354

Query: 211 SSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNRVV 256
            S  + H+T+S GIA     +PI   + ++  AD ALY AK +GRN+++
Sbjct: 355 QSEVADHVTLSIGIASTV-PQPIYHPTHLVAVADAALYEAKVNGRNQII 402


>gi|153828758|ref|ZP_01981425.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|148875805|gb|EDL73940.1| GGDEF family protein [Vibrio cholerae 623-39]
          Length = 412

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 23/168 (13%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+ +    A    L     K ++   D+D+FK+ ND +GH  GD V+  +  +L  + 
Sbjct: 241 DPLTQIPGRQALDQDLKHIGRKFTLAMLDVDHFKKFNDTYGHDTGDDVLKLVVSRLREIN 300

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---SSGPSIH------ 217
           G    V R GGEEF+    G   +E       LR+ IE+ ++ I   +  P  H      
Sbjct: 301 GKAR-VYRYGGEEFSIIYKGKLAKEVLPFIEALRQDIESYELVIRDTNQRPKSHVEGAKK 359

Query: 218 -----------ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
                      ITIS G+ +   ++ PI   +  AD ALY AK++GRN
Sbjct: 360 RSRKSNSDIVTITISIGVCDSELYRHPIEA-LKAADGALYKAKQAGRN 406


>gi|89069961|ref|ZP_01157293.1| diguanylate cyclase, putative [Oceanicola granulosus HTCC2516]
 gi|89044409|gb|EAR50540.1| diguanylate cyclase, putative [Oceanicola granulosus HTCC2516]
          Length = 503

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 73/158 (46%), Gaps = 8/158 (5%)

Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N    +       S          +V FD D FK +ND +GH  GD V+  L+
Sbjct: 334 DPLTGLHNRRHLLDRMRRELSEADRRGAPFGLVTFDADRFKAVNDTYGHDAGDAVLLALA 393

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +  V        R+G EEFA    G+    AA     LR  +E  ++  +      +T
Sbjct: 394 AVMGEVLEEGWTGCRIGVEEFALLVPGADVAAAAAAGERLRARVEAMEVRHAGAVLPPVT 453

Query: 220 ISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +S G+A    H    + ++ R+D+ALY AK+ GRNRV 
Sbjct: 454 VSVGVAVYPDHGRDAAALLKRSDEALYAAKEGGRNRVA 491


>gi|310659582|ref|YP_003937303.1| hypothetical protein CLOST_2281 [Clostridium sticklandii DSM 519]
 gi|308826360|emb|CBH22398.1| membrane protein of unknown function [Clostridium sticklandii]
          Length = 805

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 11/164 (6%)

Query: 104 SRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S  D ++GL N              +    EKLSI+  D+D+FK  ND +GH  GD+ + 
Sbjct: 497 SLTDGMTGLANRRYLDEQIMLEYFRMKRTGEKLSIIMLDVDFFKLYNDAYGHLQGDECLK 556

Query: 157 FLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGP 214
            ++  L            R GGEEF      + E  A  +A  LR  +E  ++ +  S  
Sbjct: 557 TVAKVLKTTIKRATDIAARYGGEEFVVLLPDTDEIGAIKVAETLRANVEAMKMEHKDSKI 616

Query: 215 SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S  +T+S G+A  ++        ++ +AD+ALY AK SGRN+V+
Sbjct: 617 SDVVTVSIGVATFDKHSLVAPENLVQKADEALYEAKNSGRNKVM 660


>gi|325681466|ref|ZP_08160992.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
 gi|324106956|gb|EGC01246.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
          Length = 575

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 23/173 (13%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           ++  + + +  D L+ LLN +     +G      E L+++  DID FK +ND +GH  GD
Sbjct: 412 AFRDLEEAAVTDGLTRLLNRAEIQRRIGERLRSGEPLTLIMIDIDNFKSVNDTYGHNEGD 471

Query: 153 KVIAFLSDQL---VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            VI  L++ L   + V       GR GGEEF             ++  DL   I  ++  
Sbjct: 472 NVIVGLANMLHKGIDVHNPSACAGRWGGEEF-----------MVMMPYDLVYTIPAARDM 520

Query: 210 ISSGPSI------HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S   ++      H TIS G+     ++ +  ++ R D ALY AK SG+NR V
Sbjct: 521 CSDFAALEFPLAGHRTISIGVTAAKPEDTLDELLIRVDSALYDAKHSGKNRFV 573


>gi|166998410|ref|ZP_02264270.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei PRL-20]
 gi|243065473|gb|EES47659.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei PRL-20]
          Length = 786

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 16/204 (7%)

Query: 62  EYILVENLSLVIIS-ITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +Y    N+ L++   IT+++L   G  +G I K L      ++QL+  D L+GL N  A 
Sbjct: 292 DYHHTRNVYLLMTGFITLAMLAFFGVATGLIGK-LLGREREMTQLAEFDLLTGLANRYAT 350

Query: 119 ISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           + SL       S   +L+I+F D+D FK +ND  GH  GD V+   + +L         +
Sbjct: 351 LRSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLPDAVANEGAL 410

Query: 173 GRLGGEEFAAAALGSS-EQEAAILANDL-RKIIENSQINISSGPSIHITISAGIA-ERCH 229
            R+GG+EF     G + E+ A  LA  + R   E   +    G S  +  S GIA     
Sbjct: 411 ARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPFDVR---GSSFVLHASIGIALHSVE 467

Query: 230 KEPISTIIYRADQALYVAKKSGRN 253
            E    ++ +AD A+Y AK +G+N
Sbjct: 468 NESEIDLLKKADLAMYSAKDAGKN 491


>gi|53718716|ref|YP_107702.1| hypothetical protein BPSL1080 [Burkholderia pseudomallei K96243]
 gi|53726249|ref|YP_103785.1| EAL/GGDEF domain-containing protein [Burkholderia mallei ATCC
           23344]
 gi|76811415|ref|YP_332721.1| hypothetical protein BURPS1710b_1311 [Burkholderia pseudomallei
           1710b]
 gi|121600737|ref|YP_992052.1| EAL/GGDEF domain-containing protein [Burkholderia mallei SAVP1]
 gi|124383400|ref|YP_001028498.1| EAL/GGDEF domain-containing protein [Burkholderia mallei NCTC
           10229]
 gi|126449510|ref|YP_001081605.1| EAL/GGDEF domain-containing protein [Burkholderia mallei NCTC
           10247]
 gi|254175486|ref|ZP_04882146.1| EAL/GGDEF domain protein [Burkholderia mallei ATCC 10399]
 gi|254207822|ref|ZP_04914172.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei JHU]
 gi|254260582|ref|ZP_04951636.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1710a]
 gi|254356297|ref|ZP_04972573.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei 2002721280]
 gi|52209130|emb|CAH35074.1| putative membrane protein [Burkholderia pseudomallei K96243]
 gi|52429672|gb|AAU50265.1| EAL/GGDEF domain protein [Burkholderia mallei ATCC 23344]
 gi|76580868|gb|ABA50343.1| putative membrane protein [Burkholderia pseudomallei 1710b]
 gi|121229547|gb|ABM52065.1| EAL/GGDEF domain protein [Burkholderia mallei SAVP1]
 gi|124291420|gb|ABN00689.1| diguanylate cyclase (GGDEF)/EAL domain protein [Burkholderia mallei
           NCTC 10229]
 gi|126242380|gb|ABO05473.1| diguanylate cyclase (GGDEF)/EAL domain protein [Burkholderia mallei
           NCTC 10247]
 gi|147751716|gb|EDK58783.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei JHU]
 gi|148025294|gb|EDK83448.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei 2002721280]
 gi|160696530|gb|EDP86500.1| EAL/GGDEF domain protein [Burkholderia mallei ATCC 10399]
 gi|254219271|gb|EET08655.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1710a]
          Length = 786

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 16/204 (7%)

Query: 62  EYILVENLSLVIIS-ITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +Y    N+ L++   IT+++L   G  +G I K L      ++QL+  D L+GL N  A 
Sbjct: 292 DYHHTRNVYLLMTGFITLAMLAFFGVATGLIGK-LLGREREMTQLAEFDLLTGLANRYAT 350

Query: 119 ISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           + SL       S   +L+I+F D+D FK +ND  GH  GD V+   + +L         +
Sbjct: 351 LRSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVANEGAL 410

Query: 173 GRLGGEEFAAAALGSS-EQEAAILANDL-RKIIENSQINISSGPSIHITISAGIA-ERCH 229
            R+GG+EF     G + E+ A  LA  + R   E   +    G S  +  S GIA     
Sbjct: 411 ARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPFDVR---GSSFVLHASIGIALHSVE 467

Query: 230 KEPISTIIYRADQALYVAKKSGRN 253
            E    ++ +AD A+Y AK +G+N
Sbjct: 468 NESEIDLLKKADLAMYSAKDAGKN 491


>gi|229553066|ref|ZP_04441791.1| ABC superfamily ATP binding cassette transporter, binding protein
           [Lactobacillus rhamnosus LMS2-1]
 gi|229313563|gb|EEN79536.1| ABC superfamily ATP binding cassette transporter, binding protein
           [Lactobacillus rhamnosus LMS2-1]
          Length = 397

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 15/175 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            RI   +  D L+ + N+++F   L             ++++ FDID+FKQ+ND +GH  
Sbjct: 212 TRIQYAASTDRLTQVENYASFERQLAKAFKDFRFQQTPVAMIAFDIDHFKQMNDTYGHLA 271

Query: 151 GDKVIA----FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           G++++A     L D+         F  R+GGEEF       S + A   AN L+  I + 
Sbjct: 272 GNEILAQVGRLLLDETRKTPDVQCF--RVGGEEFNLLLRHQSFERAVAFANSLQARIHHY 329

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSD 260
              + +G  +HIT+S G+A+    +      Y R DQ LY +K  GR ++    D
Sbjct: 330 PFMV-AGNVLHITVSMGLAQLKAADLNPDAFYDRTDQMLYYSKFQGRAKLTTEQD 383


>gi|226228483|ref|YP_002762589.1| hypothetical protein GAU_3077 [Gemmatimonas aurantiaca T-27]
 gi|226091674|dbj|BAH40119.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 556

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 11/161 (6%)

Query: 107 DCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+GL N + F   L           + +++++F D+D FK +ND+ GH  GD+++  +
Sbjct: 116 DALTGLANRALFRDRLEHALQVAGRDPDHRIAVLFLDLDDFKGVNDSLGHDAGDQLLRTV 175

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           S++++        V R GG+EFA       +E EA  + N ++  +      +  G  + 
Sbjct: 176 SERIMAEVRASDTVARFGGDEFAVLLERLPTESEALTIVNRIKVALRRPL--MLEGRLMS 233

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +  S G+A     + + T++  AD A+Y AK++G+ R   F
Sbjct: 234 VATSVGVAYATPADDVDTLLRNADVAMYEAKEAGKARHAVF 274


>gi|114776871|ref|ZP_01451914.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) and Response Regulator
           [Mariprofundus ferrooxydans PV-1]
 gi|114552957|gb|EAU55388.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) and Response Regulator
           [Mariprofundus ferrooxydans PV-1]
          Length = 719

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 19/176 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ Q++  D L+GL N S +   L          +  ++++F D+DYFK IND  GH  
Sbjct: 273 EKVIQMAYTDLLTGLPNRSLYFDRLKQAIAQSHRNHTTMAVLFMDLDYFKPINDELGHEW 332

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG--SSEQEAAILANDLRKIIENSQ- 207
           GD+ +  +  +L         + R+GG+EF +  LG  +SEQ A  +A+ +   I+    
Sbjct: 333 GDQALIEVGKRLQGCIRETDTLARIGGDEF-SIILGDIASEQAACRIADKIISCIQEPML 391

Query: 208 INISS---GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +N SS   G SI I I     E        T +  AD A+Y AK++GRNR   + +
Sbjct: 392 LNHSSYVLGISIGIRI-----ESSDYSDAETFMRLADDAMYQAKEAGRNRCCVYRE 442


>gi|331007322|ref|ZP_08330521.1| sensory box/GGDEF family protein [gamma proteobacterium IMCC1989]
 gi|330418884|gb|EGG93351.1| sensory box/GGDEF family protein [gamma proteobacterium IMCC1989]
          Length = 703

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 15/165 (9%)

Query: 107 DCLSGLLNHSAFISSLG-----SYNEKLSIVFF--DIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N +  + ++      SYN  L +     D+D+FK +ND  GH +GD+++   +
Sbjct: 277 DELTGLPNRTLIMETISHAIASSYNTSLPLALLCIDLDHFKNVNDTLGHSIGDELLVQAA 336

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA---NDLRKIIENSQINISSGPSI 216
            +L     +   +GR GG+EF    L   E E AI A   N ++  +E   IN    P  
Sbjct: 337 SRLAGTISSVQLLGRTGGDEF-FVLLPEIEGEQAIQAMVDNIMQMFVEPFIIN--EYPH- 392

Query: 217 HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +IT+S G A    H     T++  A+ A+Y AKK+GRN+   FS+
Sbjct: 393 YITVSIGAANYPEHSTDSHTLLKNAELAMYQAKKAGRNQCQLFSE 437


>gi|319786533|ref|YP_004146008.1| diguanylate cyclase with beta propeller sensor [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465045|gb|ADV26777.1| diguanylate cyclase with beta propeller sensor [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 996

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 8/174 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           +L++L       ++ +R D L+GL N   F   L             L +   DID+FK+
Sbjct: 821 LLEQLREQAEAYARQAREDALTGLPNRRQFDEHLARDIALARRGAHPLCLALLDIDHFKR 880

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND   H VGD+V+  +   L         V RLGGEEFA     +  +EA +  ++L++
Sbjct: 881 INDTRSHAVGDQVLREVGQVLQGERRGSDLVARLGGEEFALLMPDTLLEEAQLACDNLQE 940

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I   +   +    + +T S G+      E +  +  RAD ALY AK +GR+R+
Sbjct: 941 AIRRHR-PWAGDEELQVTFSLGLVALRPGEGMEDLYRRADAALYQAKHAGRDRL 993


>gi|293604367|ref|ZP_06686774.1| CBS/GGDEF/EAL domain protein [Achromobacter piechaudii ATCC 43553]
 gi|292817244|gb|EFF76318.1| CBS/GGDEF/EAL domain protein [Achromobacter piechaudii ATCC 43553]
          Length = 505

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 16/164 (9%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            L+  D L+GL N   F       +S      E  +++  D+D FK +ND  GH  GD V
Sbjct: 344 HLAHYDPLTGLCNRVLFGELVLRELSVAQRSGESFALLAIDLDGFKAVNDLHGHAAGDTV 403

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   +D++           RLGG+EFA   +G  +++A  +A  L   +E+  +     P
Sbjct: 404 LKEAADRMARAIRVSDVAARLGGDEFAVLLMGVGQEQAQAVAEAL---VESLSLPY---P 457

Query: 215 SIHITISAGIAERCHKEPISTIIY---RADQALYVAKKSGRNRV 255
            I + +SA +    + +   T++    RAD ALY AKK G+ RV
Sbjct: 458 GIDVAVSASVGIAIYPDSGITMLQLLERADVALYKAKKEGKRRV 501


>gi|262403998|ref|ZP_06080553.1| GGDEF family protein [Vibrio sp. RC586]
 gi|262349030|gb|EEY98168.1| GGDEF family protein [Vibrio sp. RC586]
          Length = 526

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 100/196 (51%), Gaps = 24/196 (12%)

Query: 76  ITISLLLGYISGSILKELF----ISYNRISQLSRI---DCLSGLLNHSAF---ISSLGSY 125
           + ISLLL YI+  +++E      +   R ++L  +   D L+ + N   F   + S+   
Sbjct: 315 VVISLLLSYITRLLIEERVRLEVMLDERTAELRYLVEHDSLTSIYNRRYFNQLLPSMLDA 374

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           ++  ++V FDID+FKQIND++GH VGD+ +  + + ++          R+GG+EFA  + 
Sbjct: 375 SQPFTLVIFDIDHFKQINDSYGHLVGDQALVHVVNLVMQKLKPEDHFVRMGGDEFAILSY 434

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGP------SIHITISAGIAERCHKEPISTIIYR 239
                   +  + L + +E  ++ +   P      S+ +T+S G A   H      +++ 
Sbjct: 435 -------VVDGDALSRYLEAIRVKVEQTPLLVKTESVGLTVSIG-ASPNHGMSEFELLHC 486

Query: 240 ADQALYVAKKSGRNRV 255
           AD  LY++K  GRN+V
Sbjct: 487 ADTQLYLSKSLGRNQV 502


>gi|261855319|ref|YP_003262602.1| diguanylate cyclase [Halothiobacillus neapolitanus c2]
 gi|261835788|gb|ACX95555.1| diguanylate cyclase [Halothiobacillus neapolitanus c2]
          Length = 311

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F + +         YN K S+V  D++  K IND +GH VGD+ I   S
Sbjct: 155 DPLTGLKNRRVFDTEIAREQARFVRYNIKSSLVVMDLNGLKSINDTWGHDVGDRAIRLFS 214

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L  V        R GG+EF A    ++   A  +A  +   ++  ++++ SG  I++ 
Sbjct: 215 NGLQQVLRDTDQAFRFGGDEFCAILPATNLYGAKKMAERMSAWLDAHELSLPSGELINVR 274

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAK 248
            S G+AE            RADQ+LY  K
Sbjct: 275 TSFGLAEAEKNSDEKEWFRRADQSLYHNK 303


>gi|170700638|ref|ZP_02891636.1| diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria
           IOP40-10]
 gi|170134457|gb|EDT02787.1| diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria
           IOP40-10]
          Length = 779

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 10/201 (4%)

Query: 62  EYILVENLSLVIIS-ITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +Y    N+ L++ S IT+++L  + ++  ++ +L      ++QL+  D L+GL N  A +
Sbjct: 291 DYTHTRNVYLLMTSFITLAMLAFFSVATGLIGKLLGREREMTQLAEYDLLTGLANRYATL 350

Query: 120 S------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                  S+ +   +L ++F D+D FK +ND  GH  GD V+   + +L    G    + 
Sbjct: 351 RGLRNDVSMPASLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTASRLSDAVGDEGSLA 410

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232
           R+GG+EF     G   E+ A  LA  + ++         S   +H +I   +    ++  
Sbjct: 411 RIGGDEFVVVMKGDDVERRAVRLAEAIIRMFGEPFDVRGSSFVLHASIGIALHSVANESE 470

Query: 233 ISTIIYRADQALYVAKKSGRN 253
           I  ++ +AD A+Y AK +G+N
Sbjct: 471 ID-LLKKADLAMYSAKDAGKN 490


>gi|126700000|ref|YP_001088897.1| putative signaling protein [Clostridium difficile 630]
 gi|255101536|ref|ZP_05330513.1| putative signaling protein [Clostridium difficile QCD-63q42]
 gi|115251437|emb|CAJ69270.1| putative diguanylate cyclase signaling protein [Clostridium
           difficile]
          Length = 613

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 10/131 (7%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+DYFK+ ND +GH  GD  +  ++  +       M + R GGEEF   ++    +++ I
Sbjct: 490 DVDYFKEYNDTYGHYNGDIALKNITIIIKKYLKKDMLMIRYGGEEFLILSVCKDYKKSKI 549

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGR 252
               L +I++    N       ++T+S GI + C      I  II  AD+ALY AK+SGR
Sbjct: 550 FGRKLCRIVKKFLNN-------NLTVSIGI-DTCKNSSIDIKEIIENADKALYKAKESGR 601

Query: 253 NRVVCFSDIEN 263
           NR + + D +N
Sbjct: 602 NRCLHYHDFKN 612


>gi|154247268|ref|YP_001418226.1| diguanylate cyclase with PAS/PAC sensor [Xanthobacter autotrophicus
           Py2]
 gi|154161353|gb|ABS68569.1| diguanylate cyclase with PAS/PAC sensor [Xanthobacter autotrophicus
           Py2]
          Length = 607

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 18/179 (10%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQIND 144
           S + E   +  RI+ L+  D L+ L N   F   L +     E  ++++ D+D FK IND
Sbjct: 426 SEIAERVRAQERIANLAEHDVLTALPNRRRFERRLAAAVEQGEPFAVLYLDLDGFKAIND 485

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD ++  ++++L         + RLGG+EF A  L S     A  A+++R + E
Sbjct: 486 THGHDTGDGLLQNVAERLRACLREDDTLARLGGDEF-AVILAS-----ARTADEVRPVAE 539

Query: 205 N------SQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                  +       P + I++S GIA   +  + P   ++  AD+A+Y AK+  R  V
Sbjct: 540 RIIDHVGAPYGADGDPELKISVSVGIALYPQAGRTP-RALLQAADRAMYEAKRGSRQPV 597


>gi|224827054|ref|ZP_03700151.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
 gi|224600720|gb|EEG06906.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
          Length = 887

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 9/172 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           + +L  S  ++ +L+  D L+GL N    ++ L    E+       L+++F D+D FK I
Sbjct: 441 ISQLKDSQEQLERLAHYDPLTGLPNRHLALARLEHALERARRHAFPLAVMFIDLDRFKTI 500

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+ GH  GD+++  ++ +L         + RLGG+EF      +  Q+ A +A+ L K+
Sbjct: 501 NDSLGHQAGDELLVAIAQRLHQRLRQEDTLARLGGDEFLVVIEEAPVQQVASIAHALLKV 560

Query: 203 IENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
           ++      S G   ++  S GI+         S +I  AD A+Y+AK  G N
Sbjct: 561 VDQP-FGFSGGGEAYVGASIGISLYPGDGRSASELIRNADAAMYLAKAQGSN 611


>gi|148358439|ref|YP_001249646.1| sensor histidine kinase [Legionella pneumophila str. Corby]
 gi|148280212|gb|ABQ54300.1| sensor histidine kinase [Legionella pneumophila str. Corby]
          Length = 714

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 69/138 (50%), Gaps = 11/138 (7%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAAL 185
           +I+  D+D+FK+IND FGH  GD    F+  ++  +    + +G    R GGEEF     
Sbjct: 580 AILMLDLDHFKKINDTFGHEAGD----FVLKEIGQILNNDIRLGDVATRYGGEEFVLLLF 635

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQA 243
                 A   A++LR  I   Q+   +     +T S GI+      K P   +I  AD+A
Sbjct: 636 DVDANAAKTRADNLRSAISKLQVKYGAQYVGQVTASIGISIYPDDAKSP-DELIEAADKA 694

Query: 244 LYVAKKSGRNRVVCFSDI 261
           LY AK  GRN V+ FS+I
Sbjct: 695 LYQAKNKGRNMVLLFSEI 712


>gi|330448079|ref|ZP_08311727.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492270|dbj|GAA06224.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 413

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 21/174 (12%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +L+ ID L+ +    A  + L       ++   D+D+FK+ ND +GH  GD V+  ++  
Sbjct: 237 ELAFIDQLTEIPGRRALDNELKHLGRTFTLAMIDVDHFKKFNDKYGHETGDDVLKLVASL 296

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---SSGP---- 214
           L  + G      R GGEEF     G + ++   L  +LR+ I   ++ I    S P    
Sbjct: 297 LKQIEGGGK-AFRYGGEEFTILFKGKTIEQCLPLLEELREKIAKYKMIIRDHDSRPHNDH 355

Query: 215 -------------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                        S+ +T+S G+AE   +    +++  AD ALY AK +GRN V
Sbjct: 356 AGLKERGQRKKSKSVKVTVSIGVAENYIEHEPESVLKLADNALYEAKNAGRNCV 409


>gi|323519737|gb|ADX94118.1| putative GGDEF family protein [Acinetobacter baumannii TCDC-AB0715]
          Length = 568

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 9/164 (5%)

Query: 99  RISQLSRIDCLSGLLNH---SAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152
           ++  ++  D L+G+ N    S ++  + SY ++ S   ++  DID FK +ND +GH VGD
Sbjct: 405 QLKNIANTDPLTGVSNRLALSEYLKIVESYPQQFSQTCLMIIDIDRFKHVNDQYGHIVGD 464

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
           +VI  ++DQL         + R GG+EF          +A +LA  +R  I   +I++S 
Sbjct: 465 QVIRRIADQLKANVRASDLIVRYGGDEFLILLEQVQFLDARLLAEKIRIAISLEEIDLSG 524

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   +H+++S G A          ++  AD++L  AK  GRN V
Sbjct: 525 TQEKLHVSVSIGFA--IGATSWMELLENADRSLLRAKARGRNVV 566


>gi|260768522|ref|ZP_05877456.1| GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260616552|gb|EEX41737.1| GGDEF family protein [Vibrio furnissii CIP 102972]
          Length = 444

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 79/163 (48%), Gaps = 9/163 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+G+LN  AF   L            KL+++F D+D FK IND+ GH VGD+V+
Sbjct: 268 LSEKDPLTGMLNRRAFKEHLHDAIVHANRTGVKLALLFIDLDKFKAINDSKGHDVGDEVL 327

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +  +L        F GR GG+EF    L   +    I A   R I + SQ     G  
Sbjct: 328 MQIGARLEQNIRESDFCGRFGGDEF-VVCLNLIKDFEGITAKTERLIEQLSQPMEVCGEP 386

Query: 216 IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + + +S GI+      + +  ++  AD+A+Y AK +  NR  C
Sbjct: 387 VSVGVSIGISLYPDQSQDMVALLRLADEAMYKAKSAEGNRFFC 429


>gi|254498079|ref|ZP_05110837.1| hypothetical protein LDG_2447 [Legionella drancourtii LLAP12]
 gi|254352689|gb|EET11466.1| hypothetical protein LDG_2447 [Legionella drancourtii LLAP12]
          Length = 509

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 16/169 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + ++S +D L+G+ N   F   L         Y + L+I+  DID+FK+ ND+ GH  GD
Sbjct: 337 LQEMSYMDGLTGIANRRRFDDFLTHEWYRAARYAKPLAIIMMDIDFFKRYNDSLGHLAGD 396

Query: 153 KVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
             +  +   L   V      + R GGEEF      ++  +A + A  LR+ +   Q+ + 
Sbjct: 397 DALKRVVHALKSRVLRRTDLLARYGGEEFICILPDTNVIDATLFAETLRQAVCALQLPHP 456

Query: 211 SSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNRV 255
            S  S  +TIS G+A  C      EP S ++  AD+ALY AK  GRNRV
Sbjct: 457 DSNISSFVTISVGVA--CCTPREGEP-SNLLGLADEALYRAKTLGRNRV 502


>gi|166712658|ref|ZP_02243865.1| putative sensor protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 551

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 81/166 (48%), Gaps = 10/166 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q S  D L+GL N      SL             LS++  D+D+FKQ ND  GH  GD
Sbjct: 378 LRQQSIRDPLTGLYNRRYLEESLNHELVRCTRRGLPLSVLMLDVDHFKQFNDLHGHSGGD 437

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V++ + + L+          R GGEE            A ++A  LR  IE  Q+ +  
Sbjct: 438 RVLSAIGELLLSQTRGEDICCRYGGEELTIILPEVDLPTACMMAEKLRAGIEALQV-MGD 496

Query: 213 GPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G S+  +T S G A    H   ++ ++ RAD+ALY AK+ GRN+VV
Sbjct: 497 GVSLPKVTASFGAASFPDHAGTVAQLLRRADEALYRAKQVGRNQVV 542


>gi|153007461|ref|YP_001368676.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188]
 gi|151559349|gb|ABS12847.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188]
          Length = 382

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 71/168 (42%), Gaps = 9/168 (5%)

Query: 96  SYNRISQLSR---IDCLSGLLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQINDNFG 147
            Y+RI +LS     D L+GLLN         + ++        +   DIDYFK +ND +G
Sbjct: 205 GYDRIGELSHERDSDPLTGLLNRRGLEMRYDALSQTKKGVPGWVAVCDIDYFKALNDAYG 264

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+   +  L  + G    + R GGEEF              L   +R+ IE  +
Sbjct: 265 HAAGDAVLKEFAGILRKLIGERPLIARTGGEEFVICVDDMHADNVFQLMEGVRQNIERHR 324

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                     +T S G      +      + +AD+ LY AKK GRNR 
Sbjct: 325 FQ-RLAKEASVTCSIGCVRLPEQGDFWQAVDKADKILYAAKKEGRNRT 371


>gi|330961617|gb|EGH61877.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 1508

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 11/169 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148
           S +RI +L+  D L+ L N + F   L S  ++       + ++F D+D FK IND+ GH
Sbjct: 811 SEDRIHRLAYFDALTHLPNRTLFQDRLYSALQQAERQQAWVGLMFLDLDRFKPINDSLGH 870

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKIIENSQ 207
             GD+++  ++ +L+        V R+GG+EF      GS+ +EA   A  + + I  S 
Sbjct: 871 AAGDRMLQEMATRLLACVDVNDTVARMGGDEFTLLLQQGSTREEALNRAIHVAERILTSL 930

Query: 208 IN--ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           +   +  G    +T S GIA      + +S ++  AD A+Y AK+ G+N
Sbjct: 931 VTPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKECGKN 979


>gi|315182634|gb|ADT89547.1| GGDEF family protein [Vibrio furnissii NCTC 11218]
          Length = 414

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 13/198 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI---DCLSGLLNHSAF--I 119
           +V+N  LV     + L+ G I+  +   L+       +L++I   D LSGL N      +
Sbjct: 222 VVDNHELVPPYFYLILMFGSITAGVSLYLYRIRKDKQELTKITFTDELSGLHNRHYLKKV 281

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
           S     + +  +   DID+FK +ND +GH +GD+VI  ++  +        +  R GGEE
Sbjct: 282 SRQLKAHHRYHLCILDIDHFKLVNDKYGHDIGDQVIKRVASVIKSRIRLSDYAFRFGGEE 341

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F       S ++A  + + +R   E+  + + +     +TIS G+      E +   I  
Sbjct: 342 FVVVIKTDSAEQAVRIFDRIR---EDVALYVQAPK---VTISGGVWPVT--ESVDAAIKH 393

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD+ LY+AK+ GRN ++ 
Sbjct: 394 ADRLLYMAKEQGRNTILS 411


>gi|304310878|ref|YP_003810476.1| hypothetical protein HDN1F_12400 [gamma proteobacterium HdN1]
 gi|301796611|emb|CBL44823.1| Hypothetical protein HDN1F_12400 [gamma proteobacterium HdN1]
          Length = 636

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 89/170 (52%), Gaps = 13/170 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S  RI +L+  D L+ + N  +F       ++S GS    L+++F D+D FK IND+ GH
Sbjct: 163 SEQRIYRLAYYDSLTEIPNRVSFFERLDQALASAGSTGTSLAVLFLDLDRFKPINDSLGH 222

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQ-EAAILANDLRKIIEN 205
             GD+++  ++ +L+        V R+GG+EFA     L + E+ E+  +    R + + 
Sbjct: 223 GAGDQLLKAVARRLLYCIRENDLVARVGGDEFAILLTRLNTPEEAESTAIITASRILAQF 282

Query: 206 SQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
           +   +  G  +  + S GIA   R  + P   ++  AD A+Y AKK+G+N
Sbjct: 283 ATAFMIEGRDVFSSTSIGIALFPRDGQLP-DELVRNADMAMYAAKKAGKN 331


>gi|269967494|ref|ZP_06181551.1| putative virulence-mediating protein VirC [Vibrio alginolyticus
           40B]
 gi|269827935|gb|EEZ82212.1| putative virulence-mediating protein VirC [Vibrio alginolyticus
           40B]
          Length = 637

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 13/141 (9%)

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEE 179
           S +   ++   D+D+FK  ND +GH +GDK++  ++     +F      G    R GGEE
Sbjct: 497 SPDRTFALAVLDVDHFKTFNDQYGHDIGDKMLTHIA----TLFNESTRSGDLLIRWGGEE 552

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH----KEPIST 235
           F         ++ A     LR  +EN+ + + S P ++ TIS G  ++      K+    
Sbjct: 553 FVLLFEVQRAEDCAKFLERLRYTVENTPLVVDSKP-LNATISLGAVDKLSAQIIKQEWDQ 611

Query: 236 IIYRADQALYVAKKSGRNRVV 256
             + ADQALY AK++GRN+ V
Sbjct: 612 WFFLADQALYDAKQAGRNQFV 632


>gi|260366365|ref|ZP_05778804.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
 gi|308113055|gb|EFO50595.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
          Length = 381

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 84/174 (48%), Gaps = 13/174 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           +L  +  ++  LS  D L+ L N  + I +L    +        L  +  D DYFKQ+ND
Sbjct: 194 QLLTANKQLEALSLTDSLTQLPNRRSAIKTLKKLWDDTEHKTLPLVCIMIDADYFKQVND 253

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD V+  L+  L   F +   V RLGG+EF      +       +A  +RK + 
Sbjct: 254 TCGHEAGDLVLIELAQALKYHFRSDDIVCRLGGDEFFVICPDTGLDGGLHVAEMVRKQVS 313

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255
              +     P    +IS G+AER   E +ST   +I  AD+++Y+AK+  +NRV
Sbjct: 314 QMLVPTCYEP-WRGSISVGVAERT--ENMSTYTDLIRAADESVYLAKQERKNRV 364


>gi|255307410|ref|ZP_05351581.1| putative signaling protein [Clostridium difficile ATCC 43255]
          Length = 613

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 10/131 (7%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+DYFK+ ND +GH  GD  +  ++  +       M + R GGEEF   ++    +++ I
Sbjct: 490 DVDYFKEYNDTYGHYNGDIALKNITIIIKKYLKKDMLMIRYGGEEFLILSVCKDYKKSKI 549

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGR 252
               L +I++    N       ++T+S GI + C      I  II  AD+ALY AK+SGR
Sbjct: 550 FGRKLCRIVKKFLNN-------NLTVSIGI-DTCKNSSIDIKEIIENADKALYKAKESGR 601

Query: 253 NRVVCFSDIEN 263
           NR + + D +N
Sbjct: 602 NRCLHYHDFKN 612


>gi|21113915|gb|AAM42003.1| response regulator [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573042|gb|AAY48452.1| response regulator [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 339

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 12/178 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           L+ +  +  R+S    +D L+G+ N  AF   L             LS++  D+D+FK  
Sbjct: 160 LRRMHRNEARLSSEVWVDALTGIANRRAFDHRLSEALQDAVHTQAPLSVLMIDVDHFKLY 219

Query: 143 NDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR- 200
           ND +GH  GD  +  ++  +      +     R GGEEF      +    A  LA+ +R 
Sbjct: 220 NDTYGHVNGDACLRLIAGAIAGCARRSDDIAARYGGEEFGMILPHTDVAGALRLADAIRT 279

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
            + E   ++++S  S H+T+S G A     + P++   I+  AD ALY AK+ GR+R 
Sbjct: 280 AVAELGLMHLTSPTSAHVTVSVGAATFEPGETPLTPDAIVRDADGALYRAKQGGRDRT 337


>gi|312963036|ref|ZP_07777522.1| GGDEF domain protein [Pseudomonas fluorescens WH6]
 gi|311282805|gb|EFQ61400.1| GGDEF domain protein [Pseudomonas fluorescens WH6]
          Length = 420

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 24/159 (15%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N S F       + S     E+L++++ D D FK+IND+FGH  GD V+  ++
Sbjct: 248 DSLTGLPNRSFFEGRLIRALRSAAKAKERLAVLYLDSDRFKEINDSFGHAAGDAVLVAVA 307

Query: 160 DQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIE------NSQINIS 211
           +++         V RLGG+EFA   A L S E        D R+I +      ++ I + 
Sbjct: 308 NRVRAQLREDDLVARLGGDEFAILLAPLHSLE--------DARRIADKIIASMDAPIAVP 359

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKK 249
               +  ++S GIA    H     T++  AD A+Y AK+
Sbjct: 360 GSAQVLTSLSIGIALYPDHGATPGTLLNAADAAMYQAKR 398


>gi|300113840|ref|YP_003760415.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
 gi|299539777|gb|ADJ28094.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
          Length = 1500

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 11/163 (6%)

Query: 100  ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
            I QL+  D L+ L N + F   LG          EK +++F D+D FK +ND  GH VGD
Sbjct: 1051 IHQLAYHDVLTNLPNRTLFHKQLGGVINRSHLRGEKFAVLFLDLDRFKLVNDTLGHEVGD 1110

Query: 153  KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS 211
             ++   +D++V    +   V RLGG+EF        S + AA +A  +  ++  S+  + 
Sbjct: 1111 LLLKAAADRIVGCLRSKDMVARLGGDEFTVILEQIESPRIAAEVAAKICSVL--SKPFVF 1168

Query: 212  SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
            SG  ++I  S GI+      E  S +I  AD A++ AK+ G +
Sbjct: 1169 SGQEMYIGTSIGISLYPDDGEDASMLIKHADTAMFRAKEQGNS 1211


>gi|297579171|ref|ZP_06941099.1| GGDEF family protein [Vibrio cholerae RC385]
 gi|297536765|gb|EFH75598.1| GGDEF family protein [Vibrio cholerae RC385]
          Length = 429

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 8/132 (6%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+IND +GH  GD+++  ++  L         + R GGEEF       S +EA  
Sbjct: 299 DIDHFKKINDQYGHITGDRILQAVASCLRKNVRDGDTIIRFGGEEFLLLFQAHSNKEAWH 358

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + + LR+ +++      +  SI  T   G         +   I RAD ALY AK++GRN+
Sbjct: 359 MLDRLRQRVKDDHSLYGTTISIGFTFIDG--------SLPAAISRADAALYQAKEAGRNQ 410

Query: 255 VVCFSDIENNTC 266
           V+  S+ EN++ 
Sbjct: 411 VIADSEKENDSA 422


>gi|261250311|ref|ZP_05942887.1| C-di-GMP phosphodiesterase A-related protein [Vibrio orientalis CIP
           102891]
 gi|260939427|gb|EEX95413.1| C-di-GMP phosphodiesterase A-related protein [Vibrio orientalis CIP
           102891]
          Length = 685

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 15/190 (7%)

Query: 82  LGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSI 131
           LG+++    ++ K+   +  +++QL+  D L+GL N S  +  L          N+  ++
Sbjct: 219 LGHLAQTFDTLWKDREAAEVQLNQLAYYDSLTGLANRSLMLQMLEDEIIHANKDNQAGAL 278

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
            + D+D FK IND+ GH +GD +I  +S ++           R+GG+EFA     +S  +
Sbjct: 279 FYLDLDRFKTINDSLGHTIGDHLIKAISMRIEAWLQEEFTAARIGGDEFAILLPHTSVDK 338

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKK 249
           A  LA  L  +I N   +I     ++ T+S GIA         I  ++ +AD ALY AK 
Sbjct: 339 AHELAQQLLALISNP-YSIDDH-QLYCTVSVGIAVFPSVGGTNID-VLRQADTALYRAKV 395

Query: 250 SGRNRVVCFS 259
           +GRN+ + + 
Sbjct: 396 AGRNKYMFYE 405


>gi|288942578|ref|YP_003444818.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Allochromatium vinosum DSM 180]
 gi|288897950|gb|ADC63786.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Allochromatium vinosum DSM 180]
          Length = 648

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 9/171 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           + L  +  R+  L+  D L+GL N + F S L         Y  + +++F D+D FK++N
Sbjct: 208 QRLREASERLDYLAHHDALTGLPNRAYFQSRLEQCLQRAKRYQRRFALLFLDLDRFKEVN 267

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH VGD ++  +++ L         + RLGG+EF       SE    +   D R + 
Sbjct: 268 DTLGHHVGDALLCRVAEILSAQIRDVDTIARLGGDEFVIILEDISEPRFIMHFVD-RVMD 326

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253
           + S+     G    +T+S GI+        + T++ RAD A+Y  KKSGRN
Sbjct: 327 DFSRPLRLEGREFFVTVSVGISLYPDDGLDLETLVRRADIAMYQTKKSGRN 377


>gi|124515977|gb|EAY57486.1| Diguanylate cyclase [Leptospirillum rubarum]
          Length = 380

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 9/172 (5%)

Query: 96  SYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDK 153
            +NR +S+ + ID L+G+LN       L    +  LS++ FD+D FK IND +GH  GD+
Sbjct: 211 KHNRKVSREANIDPLTGILNRRGLQHRLSFLKDPVLSLLIFDLDDFKAINDTYGHNAGDE 270

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  ++  +  +        R GG+EF          +A  +A  +R  I      + +G
Sbjct: 271 VLRKIAQGVRTLVRKVDLFSRFGGDEFIVVMPALEISQARFVAERIRSTIARMPFLVGTG 330

Query: 214 PSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            S+ IT S G+     +  HK  +  ++  AD ALY AK  G+N++   + I
Sbjct: 331 -SVTITASFGLTGTYVDGAHK--MDDLLELADSALYQAKSQGKNQICATNPI 379


>gi|17230366|ref|NP_486914.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17131968|dbj|BAB74573.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 330

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 12/176 (6%)

Query: 90  LKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
           L++   + NR + +L  ID L+ + N   F        ++       LS++  D+D+FK 
Sbjct: 132 LQQKLEAANRELQRLVTIDELTQVANRRRFEEYCAQEWQRMARDQLPLSLILCDVDFFKA 191

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND +GH  GD+ +  ++  +      P   V R GGEEFA     +    A  LAN + 
Sbjct: 192 YNDTYGHRAGDRCLQLVAKAIESCVNRPADVVARYGGEEFAVILPRTYPDGAIHLANAIC 251

Query: 201 KIIENSQI-NISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRN 253
             +   QI +++S  +  +TISAG+A            II  AD+ALY AK +GR+
Sbjct: 252 TAVRELQITHLTSQANTCVTISAGVATEIPVPNSDFQEIINAADRALYQAKMTGRD 307


>gi|94313963|ref|YP_587172.1| putative signaling protein [Cupriavidus metallidurans CH34]
 gi|93357815|gb|ABF11903.1| putative signaling protein (GGDEF domain) [Cupriavidus
           metallidurans CH34]
          Length = 400

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 8/141 (5%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187
           L+++  DID+FK++NDN GH  GD V+  ++  L      P   V R GGEEF       
Sbjct: 248 LTLMVCDIDHFKRVNDNHGHQGGDAVLMHVAMLLQDRIHEPRDSVVRYGGEEFLLVMPQM 307

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGI-----AERCHKEPISTIIYRADQ 242
             + AA LA D+R  +  S++    G S+  T+S G+     +    +   S +I  AD 
Sbjct: 308 DFESAASLAEDMRAAVAGSEVPGPDGKSMRATVSIGVLSVDFSASDTEVTESALIAAADM 367

Query: 243 ALYVAKKSGRN--RVVCFSDI 261
            LY AK++GRN  R   ++D+
Sbjct: 368 LLYEAKRAGRNSIRTRLWADM 388


>gi|326403202|ref|YP_004283283.1| hypothetical protein ACMV_10540 [Acidiphilium multivorum AIU301]
 gi|325050063|dbj|BAJ80401.1| hypothetical protein ACMV_10540 [Acidiphilium multivorum AIU301]
          Length = 792

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 10/174 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNE-KLSIVFFDIDYFKQ 141
           GS +  +  S  RI  L++ D L+ L+N +AF      +L   N    ++++ D+D FK 
Sbjct: 345 GSDVTAMQRSRQRIDFLAQHDTLTELINRAAFGVLLDRALAPGNACGAALLYLDLDQFKA 404

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND++GH +GD ++  ++ +L           RLGG+EFA     +S  +A  +A+   +
Sbjct: 405 VNDSYGHGLGDILLRAVASRLRNAIRETDTAARLGGDEFAVLLPSNSRIDATAMAD---R 461

Query: 202 IIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRN 253
           IIE  S+     G S+ I +S GIA          +++R AD ALY AK  GR 
Sbjct: 462 IIERLSRPYRFDGVSVEIGVSIGIALAPADGDRQDLLFRNADLALYRAKNDGRG 515


>gi|320177292|gb|EFW52297.1| hypothetical protein SDB_00244 [Shigella dysenteriae CDC 74-1112]
          Length = 422

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 210 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 269

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 270 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMAS--- 326

Query: 201 KIIENSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 327 RILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 386

Query: 259 S 259
           +
Sbjct: 387 T 387


>gi|307300303|ref|ZP_07580083.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Sinorhizobium meliloti BL225C]
 gi|307319586|ref|ZP_07599012.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Sinorhizobium meliloti AK83]
 gi|306894708|gb|EFN25468.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Sinorhizobium meliloti AK83]
 gi|306904469|gb|EFN35053.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Sinorhizobium meliloti BL225C]
          Length = 876

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 7/135 (5%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALG 186
           K+SI   D+D FKQIND  GH  GD+++   +  L        FV R+GG+EF    A G
Sbjct: 481 KISIFHIDLDRFKQINDTMGHAAGDEILKHAASLLRDNARQDDFVARIGGDEFVIIRASG 540

Query: 187 SSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCH-KEPISTIIYRADQAL 244
             +++AA+ +    ++IE   + +        I +S GIA +    + +S ++  AD AL
Sbjct: 541 GCDEDAALAS----RVIEAMSVPVRYEDQECRIGVSIGIAAQTDAADDLSQVLVNADIAL 596

Query: 245 YVAKKSGRNRVVCFS 259
           Y AK+ GRNR   F+
Sbjct: 597 YEAKRRGRNRHETFT 611


>gi|317056507|ref|YP_004104974.1| diguanylate cyclase [Ruminococcus albus 7]
 gi|315448776|gb|ADU22340.1| diguanylate cyclase [Ruminococcus albus 7]
          Length = 633

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 12/201 (5%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSI-----LKELFISYNRISQLSRIDCLSGLLNH 115
           L Y ++ N S    S+    L+  IS S+     L  L      + +L  ID L  + N 
Sbjct: 423 LGYAIISNGSFPTKSLVCHSLMMSISHSLENIRKLINLNCVIEELDKLYVIDPLCNIYNR 482

Query: 116 SAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
           + FI +   +        +K+ I F D+D  K INDNFGH  GD  +  LS  +      
Sbjct: 483 NGFIRAADPFFNECRMLGQKMLISFVDMDRLKYINDNFGHSEGDFALRTLSSIISECCDE 542

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
            M   R GG+EF    + + E++   + + +RK IE +   I    ++  +I + +    
Sbjct: 543 SMICARFGGDEFIIIGVDAEEEDIDRVESSIRKRIEQTNKTIDKPYTVECSIGSLVTRVA 602

Query: 229 HKEPISTIIYRADQALYVAKK 249
               +  +I +AD+ +Y  KK
Sbjct: 603 DDMTLFKMITKADEVMYKQKK 623


>gi|256830007|ref|YP_003158735.1| diguanylate cyclase/phosphodiesterase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579183|gb|ACU90319.1| diguanylate cyclase/phosphodiesterase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 556

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 11/169 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S ++  D L+GL N +     L         +  K++++F D+D+FK IND+ GH +GD
Sbjct: 123 LSYMAEHDLLTGLPNRALLTDRLVQSILLAKRHGNKVALMFLDLDHFKHINDSLGHGIGD 182

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINIS 211
           +++  ++ +L         V R GG+EF    L    ++    A+   K+I +  + +  
Sbjct: 183 QLLQSVAKRLQASVRNSDTVSRHGGDEF--VVLLPEVEDVQSAAHAAEKLIHSVGEPHFI 240

Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           SG  + +T+S GI+           ++ +AD A+Y AKK+GRN    F+
Sbjct: 241 SGQELRVTLSVGISMYPDDGVDAEALMRKADMAMYQAKKAGRNSYKIFT 289


>gi|15966662|ref|NP_387015.1| hypothetical protein SMc03178 [Sinorhizobium meliloti 1021]
 gi|15075934|emb|CAC47488.1| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021]
          Length = 882

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 7/135 (5%)

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALG 186
           K+SI   D+D FKQIND  GH  GD+++   +  L        FV R+GG+EF    A G
Sbjct: 487 KISIFHIDLDRFKQINDTMGHAAGDEILKHAASLLRDNARQDDFVARIGGDEFVIIRASG 546

Query: 187 SSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCH-KEPISTIIYRADQAL 244
             +++AA+ +    ++IE   + +        I +S GIA +    + +S ++  AD AL
Sbjct: 547 GCDEDAALAS----RVIEAMSVPVRYEDQECRIGVSIGIAAQTDAADDLSQVLVNADIAL 602

Query: 245 YVAKKSGRNRVVCFS 259
           Y AK+ GRNR   F+
Sbjct: 603 YEAKRRGRNRHETFT 617


>gi|320160268|ref|YP_004173492.1| hypothetical protein ANT_08580 [Anaerolinea thermophila UNI-1]
 gi|319994121|dbj|BAJ62892.1| hypothetical protein ANT_08580 [Anaerolinea thermophila UNI-1]
          Length = 1423

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 9/161 (5%)

Query: 103  LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            L+  D L+ L N   F       +     +   L +V  DID+FK++ND +GH VGD+V+
Sbjct: 1254 LAITDPLTNLYNRRGFFELARHEMERSRRFGSPLVVVMADIDHFKRVNDTYGHSVGDEVL 1313

Query: 156  AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              L+ +L         + R GGEEF      S  Q     A  +R  +      I     
Sbjct: 1314 QELAQRLRETLREADLICRYGGEEFCLLLPESDLQSGYSAAERVRLAVAEKSFCIEE-LE 1372

Query: 216  IHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
            + ITIS G+      ++ +  +I +ADQAL  AK  GRNRV
Sbjct: 1373 LPITISLGMTRLASPQQTLEELIEQADQALLHAKAFGRNRV 1413


>gi|312963449|ref|ZP_07777931.1| GGDEF domain protein [Pseudomonas fluorescens WH6]
 gi|311282255|gb|EFQ60854.1| GGDEF domain protein [Pseudomonas fluorescens WH6]
          Length = 457

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 81/176 (46%), Gaps = 21/176 (11%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           Q++  D L+GL    A    +        +   D+D+FK+ ND  GH VGD+V+  ++ +
Sbjct: 267 QMAFRDELTGLPGRRALNERMQRLGRNYVLAMTDVDHFKRFNDTHGHDVGDQVLRLVASK 326

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS--------- 212
           L  V        R GGEEFA    G +  E      +LR+II +  I + +         
Sbjct: 327 LSKV-SGGGRAYRYGGEEFAVVYAGKTLDECMPHLEELRQIIADYAIKLRNPDNRPQDDF 385

Query: 213 ----------GPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                       S+ +TIS G+AER   +     ++  AD+ALY AK +GRN VV 
Sbjct: 386 QGRQRRAAGGASSVSVTISIGVAERQVEQRTPEEVLKSADEALYAAKGAGRNCVVA 441


>gi|262281578|ref|ZP_06059356.1| inner membrane protein yfiN [Acinetobacter calcoaceticus RUH2202]
 gi|262256954|gb|EEY75694.1| inner membrane protein yfiN [Acinetobacter calcoaceticus RUH2202]
          Length = 403

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 89/186 (47%), Gaps = 18/186 (9%)

Query: 82  LGYISGSILKELFISYNRISQLSRI-------DCLSGLLNHSAFISSL------GSYNEK 128
           L  +   +L+E+ I  N++ + +R        D L+ L N   F   L        ++ K
Sbjct: 212 LNTVFNELLEEIQIWDNQLQKENRKLSFQAHHDQLTLLPNRHYFYQILLDMFEDKGFDNK 271

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALG 186
            +++F D + FK IND FGH  GD+V+  ++++L        F+ RLGG+EFA    ++ 
Sbjct: 272 SALLFIDNNNFKAINDQFGHLAGDEVLKEMANRLQTRLRHQDFIARLGGDEFAVILHSIS 331

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
            ++   +I  N L    E   +N   G +I+ + S GIA           I +ADQA+Y 
Sbjct: 332 HADHLISIAENLLESCKEPLHLN---GQTIYFSFSVGIALSQFASSPEDFIMQADQAMYK 388

Query: 247 AKKSGR 252
           AK S  
Sbjct: 389 AKNSDE 394


>gi|251789553|ref|YP_003004274.1| PAS/PAC and GAF sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Dickeya zeae Ech1591]
 gi|247538174|gb|ACT06795.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Dickeya zeae Ech1591]
          Length = 722

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 24/173 (13%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + LF+  +R       D L+GL N +   S+L       E  +I+  D+D FK IND+ G
Sbjct: 290 ERLFLQAHR-------DPLTGLANRTLLTSTLDQVLKNGEPAAIMIIDLDGFKDINDSLG 342

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAILANDLRK- 201
           H  GD++++ +S +L     +   V R+GG+EFA      +++E     A  + +D+ + 
Sbjct: 343 HASGDEILSSVSRRLQDNVQSGDLVARMGGDEFAILLPKQNDKERVAKLAEKIIHDISQA 402

Query: 202 -IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +++N QIN S+  SI + +        H   +  ++  AD ALY AK  GRN
Sbjct: 403 VLVDNKQINTSA--SIGLVMYP-----THGTTVQDLLTSADLALYQAKADGRN 448


>gi|229136167|ref|ZP_04264920.1| Sensory box protein [Bacillus cereus BDRD-ST196]
 gi|228647326|gb|EEL03408.1| Sensory box protein [Bacillus cereus BDRD-ST196]
          Length = 735

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 85/179 (47%), Gaps = 17/179 (9%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDN 145
           L+    ++  ++  D L+GL N   F   L +           ++++F D+D FK+IND 
Sbjct: 296 LYEKQKQVEHMAFHDALTGLPNRRKFEKDLKTILNLAQNTTNDVAVMFLDLDRFKKINDR 355

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIE 204
            GH VGD ++  ++ +L     +   V R GG+EF        SE+ A+ +A  +  I+ 
Sbjct: 356 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPDMYSEKSASFMAEQILTILN 415

Query: 205 N----SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                    +S  PSI I +        +   ++ ++  AD A+Y AK +G+NR + FS
Sbjct: 416 KPYFIKDEELSVTPSIGIAMYPD-----YGNDVTELMKNADMAMYRAKANGKNRFIFFS 469


>gi|254470566|ref|ZP_05083970.1| hypothetical protein PJE062_5112 [Pseudovibrio sp. JE062]
 gi|211960877|gb|EEA96073.1| hypothetical protein PJE062_5112 [Pseudovibrio sp. JE062]
          Length = 698

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 93/190 (48%), Gaps = 20/190 (10%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI-------VFFDID 137
           +S S + +   + + +  L+  D L+GL N +        Y ++  I       +F D+D
Sbjct: 241 LSASDVTKRLKAEHEVRYLAHHDTLTGLANRTFLEIEAERYLDETRITGNPGALIFIDLD 300

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK IND  GH VGD ++  ++ +L  V     FV RLGG+EF       ++ +   L +
Sbjct: 301 RFKTINDTLGHLVGDDLLVVIAKRLKEVVEGIGFVARLGGDEFVVLIANFADYD---LLD 357

Query: 198 DLRKIIEN--SQINISSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKSG 251
           D+ + I    S+     G  + +T S G+   C    H   + T++ +AD A+Y AK  G
Sbjct: 358 DISREIRTALSKPCKVRGHMLQVTPSIGV---CTYPEHGVDLDTLMRKADLAMYKAKDLG 414

Query: 252 RNRVVCFSDI 261
           R+R +CF DI
Sbjct: 415 RDR-ICFFDI 423


>gi|170740107|ref|YP_001768762.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium sp. 4-46]
 gi|168194381|gb|ACA16328.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium sp. 4-46]
          Length = 905

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 10/165 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           S  +I+ L+R D L+GL N          + +   Y +  +++  D+D FK +ND+ GHP
Sbjct: 475 SEEQIAYLARHDALTGLPNRIPLREWMEEVFARRPYGDVGAVLCLDLDGFKVVNDSLGHP 534

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQI 208
            GD+++  ++ +L  V      V RLGG+EFA   +G+ + ++AA+LA  +  +++  Q 
Sbjct: 535 AGDELLRLVARRLRGVVSATDRVARLGGDEFAIVQVGAEQPRQAALLAERVVAVLQ--QP 592

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGR 252
               G  + I  S G+A     +P    + R AD ALY AK +GR
Sbjct: 593 FEIQGQQVVIGASLGVATALSADPTPDALLRSADIALYQAKAAGR 637


>gi|87199442|ref|YP_496699.1| diguanylate cyclase/phosphodiesterase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135123|gb|ABD25865.1| diguanylate cyclase/phosphodiesterase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 724

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 85/188 (45%), Gaps = 28/188 (14%)

Query: 91  KELFISYNRISQLSRI---DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFK 140
           +++   Y R  + SR    D L+GL N         A +++    N    ++  D+D FK
Sbjct: 155 RDVTQEYTRKREDSRAAEFDSLTGLYNRHRMTRRLDAILAAFRQANRCCGLMMLDLDKFK 214

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--------AAALGSSEQEA 192
            +ND  GHP GD+++  ++++L  V G    +GRLGG+EF            LG      
Sbjct: 215 HVNDTMGHPAGDELLRQVAERLRKVVGERGEIGRLGGDEFQIILPDIDDRGRLGE----- 269

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSG 251
             LA  + +I+  SQ     G    I  S GIA   H  E    ++  AD ALY AK  G
Sbjct: 270 --LAAKVIQIV--SQPYAIEGKRAVIGTSVGIAVAPHDGEDREGLVSSADLALYAAKHGG 325

Query: 252 RNRVVCFS 259
           R +   FS
Sbjct: 326 RGQFRFFS 333


>gi|117918807|ref|YP_867999.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117611139|gb|ABK46593.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 605

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 86/181 (47%), Gaps = 11/181 (6%)

Query: 90  LKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDN 145
           L++  +S N ++  ++  D L+GL N   F  +L +  ++   + ++  D+DYFK  ND 
Sbjct: 425 LQQALVSVNAQLRVMAETDELTGLSNRRPFTHTLETLLQQAKPVGLLMLDVDYFKSYNDT 484

Query: 146 FGHPVGDKVIAFLSDQLVV--VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           +GH  GD  +  ++  L    V      + R+GGEEFA      +  +   +AN L   +
Sbjct: 485 YGHLEGDAALRLVAQALKQCDVLPQDSLLARIGGEEFAIILEQITPIQLEAIANQLCYRV 544

Query: 204 ENSQINISSGPSIHITISAG-----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
               I   S P   IT+S G     +        +S ++ RAD  LY AK+ GRN VV  
Sbjct: 545 AALDIPHRSSPKGKITLSIGGVYLPLDTSVRGFTLSEVLRRADICLYRAKEQGRNTVVIE 604

Query: 259 S 259
           S
Sbjct: 605 S 605


>gi|238783832|ref|ZP_04627850.1| hypothetical protein yberc0001_29060 [Yersinia bercovieri ATCC
           43970]
 gi|238715219|gb|EEQ07213.1| hypothetical protein yberc0001_29060 [Yersinia bercovieri ATCC
           43970]
          Length = 1116

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 9/168 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++S  +  D L+GL N + F + L +        N++ ++ F D+DYFK IND  GHP G
Sbjct: 683 KLSHSASHDNLTGLPNRANFENKLKAAIQVSVELNQQHALAFLDLDYFKAINDTAGHPAG 742

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++  +S  +         V RLGG+EF    L  +   A  +   L   I   Q    
Sbjct: 743 DALLKEISQLMRQHLRNSDCVARLGGDEFGLLMLNCTLPHAKAITQSLVSTINGYQFYWE 802

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +     I  SAG+ +        S I+ +AD A Y AK SGR +V  +
Sbjct: 803 N-KLYRIGASAGVTQISSSNNQRSEIMAQADIACYTAKHSGRGQVFLY 849


>gi|307154354|ref|YP_003889738.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
 gi|306984582|gb|ADN16463.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
          Length = 355

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 11/171 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+ +D L+ + N   F   L    ++       LS++  DIDYFK  ND +GH VGD
Sbjct: 178 LKRLATLDGLTQIANRLQFDYYLKQEWKRAQREQVPLSLIMSDIDYFKDYNDCYGHLVGD 237

Query: 153 KVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
             +  +++ +      P     R GGEEFA     +  Q A ++A  +   I + +I + 
Sbjct: 238 DCLKLVAETINKTVWRPGDLAARYGGEEFAVILPNTDVQGAMLVAERMCWEIRHLKIPHA 297

Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFS 259
            S  S ++T+S G+A    +  +S  TI+  AD ALY AK  GR+R++ F+
Sbjct: 298 HSRVSEYVTLSLGVAGIIPRPGLSSKTILDAADHALYQAKAQGRDRIILFN 348


>gi|271500313|ref|YP_003333338.1| PAS/PAC and GAF sensor-containing diguanylate cyclase [Dickeya
           dadantii Ech586]
 gi|270343868|gb|ACZ76633.1| diguanylate cyclase with PAS/PAC and GAF sensors [Dickeya dadantii
           Ech586]
          Length = 604

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 17/178 (9%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDY 138
           YI  + +  L +  +R++  +  D L+GL N  A IS L     K     L+++FFDI+ 
Sbjct: 426 YILSTDITYLTVLRDRLAFEANHDHLTGLPNRRAVISYLQRLASKKRRGALALLFFDINK 485

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK  ND FGH  GD+VI   +  L     +  F+GRL G+EF          E   LA++
Sbjct: 486 FKHYNDQFGHDFGDRVIKTFARLLRQNTRSYDFIGRLAGDEFLMVI-----HEQQNLASE 540

Query: 199 LRKIIENSQINISSGPSIH---ITISAGIAERCHKE--PIST--IIYRADQALYVAKK 249
           +R I +  +  I    +I    IT+SA +     +E  P++   +I +AD A+Y AK+
Sbjct: 541 IRIITQKLKAKIEKPVTIRHQTITLSASVGHAILQEDAPLNANELIRKADSAMYRAKR 598


>gi|257093931|ref|YP_003167572.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257046455|gb|ACV35643.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 512

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 87/178 (48%), Gaps = 17/178 (9%)

Query: 92  ELFISYNRISQLS---RIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           ELF  +  + Q S   R D L+  LN           I+ +      L +   DID FK 
Sbjct: 337 ELFRLHQELHQASASARHDPLTDTLNRRGLDEVLAREIAGVRRKEAPLCVSLLDIDNFKT 396

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +ND  GH  GD+ +  L  Q+V     P+  + R GGEEF    +  +   A I A  ++
Sbjct: 397 LNDRLGHASGDEALIHLV-QVVRQHLRPIDTLARYGGEEFVIL-MPDTAVAAGIEA--MK 452

Query: 201 KIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++      N  ++    I IT SAG+A+   +E     I RADQA+Y+AK++G+NRV+
Sbjct: 453 RLQRELTRNFFLAGNEKILITFSAGVAQLTAEESGEDAIARADQAMYLAKRAGKNRVM 510


>gi|171058297|ref|YP_001790646.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Leptothrix cholodnii SP-6]
 gi|170775742|gb|ACB33881.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptothrix cholodnii SP-6]
          Length = 771

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 9/164 (5%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           ++  R++ L+  D L+GL N + F       +    S  +  +++  D+D+FK +ND  G
Sbjct: 310 MADRRMAWLAHFDTLTGLTNRAHFRVLLEAALQQARSPEQGGAVMCLDLDHFKTVNDTLG 369

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           HP GD ++  ++ +L    G    VGRLGG+EFA     +++ +  I A   R +    +
Sbjct: 370 HPTGDALLVEVARRLKAAVGPGDVVGRLGGDEFAVLLRNAADVQ-QISATAQRILDALRE 428

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250
              + G  + + +S GIA        +  ++  AD ALY AK S
Sbjct: 429 PCAALGAQVPVRLSIGIARFAQDGASVDELMQHADLALYDAKAS 472


>gi|152982088|ref|YP_001354597.1| hypothetical protein mma_2907 [Janthinobacterium sp. Marseille]
 gi|151282165|gb|ABR90575.1| Hypothetical protein mma_2907 [Janthinobacterium sp. Marseille]
          Length = 719

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 16/163 (9%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N  A I  L           + L+++F D+D FK +ND +GH  GD+++  ++
Sbjct: 560 DPLTDLPNRRALIQRLPESIARAARLGKPLAVLFLDLDGFKGVNDGYGHEAGDELLRTIA 619

Query: 160 DQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIH 217
            +L+    T   V RL G+EF     + + + +A  +A+   KI+   Q   + +  ++ 
Sbjct: 620 QRLLGAVRTTDTVARLAGDEFVIVLEMLNGDSDAMDVAD---KILHTLQQPFTLTAATVT 676

Query: 218 ITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I+ S GIA      H  P   +I  AD A+Y AKK G+NR V 
Sbjct: 677 ISASIGIAMHWPEDHTTP-EQLITLADGAMYAAKKKGKNRAVA 718


>gi|254251770|ref|ZP_04945088.1| hypothetical protein BDAG_00967 [Burkholderia dolosa AUO158]
 gi|124894379|gb|EAY68259.1| hypothetical protein BDAG_00967 [Burkholderia dolosa AUO158]
          Length = 790

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 16/204 (7%)

Query: 62  EYILVENLSLVIIS-ITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +Y    N+ L++ S IT+++L   G  +G I K L      ++QL+  D L+GL N  A 
Sbjct: 302 DYYHTRNVYLLMTSFITLAMLAFFGVATGLIGK-LLGREREMTQLAEYDLLTGLANRYAT 360

Query: 119 IS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           +       S+ S   +L ++F D+D FK +ND  GH  GD V+   + +L    G    +
Sbjct: 361 LRGLRNDVSMPSSLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVGDEGSL 420

Query: 173 GRLGGEEFAAAALGSS-EQEAAILAND-LRKIIENSQINISSGPSIHITISAGIA-ERCH 229
            R+GG+EF     G   E+ A  LA   +R   E   +    G S  +  S GIA     
Sbjct: 421 SRIGGDEFVVVMKGDDVERRAVRLAEAIIRMFAEPFDVR---GSSFVLHASIGIALHTVA 477

Query: 230 KEPISTIIYRADQALYVAKKSGRN 253
            E    ++ +AD A+Y AK +G+N
Sbjct: 478 NESEIDLLKKADLAMYSAKDAGKN 501


>gi|34495501|ref|NP_899716.1| pleD gene product [Chromobacterium violaceum ATCC 12472]
 gi|34101357|gb|AAQ57726.1| pleD gene product [Chromobacterium violaceum ATCC 12472]
          Length = 514

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 13/173 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGH 148
           S+  +  LSR+D ++G+ N   F  SL G +         L ++  DIDYFK  ND++GH
Sbjct: 331 SHAEVVALSRVDSVTGIANRRCFEESLDGEWRRARRLGAPLGMLMIDIDYFKLYNDHYGH 390

Query: 149 PVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
             GD  +  ++  +      P   V R GGEE       +  +  A +   + + +   Q
Sbjct: 391 VSGDYCLREVAQAIRSSVRRPQDLVARYGGEEIVCLLPDTGAEGVAFVGEAVLEAVRELQ 450

Query: 208 INISSGPSIH--ITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256
           +   +G S+   +TIS G A    +E + +  +I  AD+ LY AK+ GRNR+V
Sbjct: 451 LP-HAGSSVADIVTISIGGATVHPREVVDSRQLIEAADRELYRAKQQGRNRLV 502


>gi|330969773|gb|EGH69839.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 972

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           E + +  +++ L+  D L+ L N           IS   S  + +S++F D+D FK +ND
Sbjct: 521 ERYDAKKKLTYLAENDSLTHLPNRWFLSNYLREIISRKTSAPDAVSVIFIDLDRFKAVND 580

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LANDLRKI 202
             GH VGD+++     +L    G    V RLGG+EF+     S   E+ I  LA  + + 
Sbjct: 581 TMGHSVGDQLLIQAGRRLKDCIGENSVVARLGGDEFSIVVTHSVYSESLIKSLATHVVEA 640

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           +     N+  G  I ++ S GIA           I+  AD A+Y AKKSGRN
Sbjct: 641 L-GKPFNL-GGQDIFVSASVGIANYPFDGRDTGVILKNADTAMYQAKKSGRN 690


>gi|327484207|gb|AEA78614.1| GGDEF family protein [Vibrio cholerae LMA3894-4]
          Length = 429

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 8/132 (6%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+IND +GH  GD+++  ++  L         + R GGEEF       S +EA  
Sbjct: 299 DIDHFKKINDQYGHITGDRILQAVASCLRKNVRDGDTIIRFGGEEFLLLFQAHSNKEAWH 358

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + + LR+ +++      +  SI  T   G         +   I RAD ALY AK++GRN+
Sbjct: 359 MLDRLRQRVKDDHSLYGTTISIGFTFIDG--------SLPAAISRADTALYQAKEAGRNQ 410

Query: 255 VVCFSDIENNTC 266
           V+  S+ EN++ 
Sbjct: 411 VIADSEKENDSA 422


>gi|239905724|ref|YP_002952463.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239795588|dbj|BAH74577.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 397

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNE--K 128
           + I L+L  ++  +L ++    +++  L+  D L+GL N   F   L     G+  +  +
Sbjct: 204 LAICLVLA-VNRRLLADVGALKDKLEILATHDALTGLPNRPLFYDRLAVALAGARRQDVQ 262

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALG 186
           L+++  D+D FK +ND+ GHP GD ++   + +L         V R GG+EF      +G
Sbjct: 263 LAVMSVDLDGFKGVNDSLGHPAGDTLLREAARRLAGCLRASDTVSRFGGDEFVLLIGDVG 322

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALY 245
                 A+ A  L    E   +   +G   H++ S G+A    H   I  ++ R+D+ALY
Sbjct: 323 GPGDALAVAAKILAAFREPFTL---AGQEAHVSASIGVALSPAHGREIEELVRRSDEALY 379

Query: 246 VAKKSGRN 253
            AK  GR+
Sbjct: 380 RAKAGGRD 387


>gi|229520617|ref|ZP_04410041.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
 gi|229342441|gb|EEO07435.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
          Length = 429

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 8/132 (6%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+IND +GH  GD+++  ++  L         + R GGEEF       S +EA  
Sbjct: 299 DIDHFKKINDQYGHITGDRILQAVASCLRKNVRDGDTIIRFGGEEFLLLFQAHSNKEAWH 358

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + + LR+ +++      +  SI  T   G         +   I RAD ALY AK++GRN+
Sbjct: 359 MLDRLRQRVKDDHSLYGTTISIGFTFIDG--------SLPAAISRADTALYQAKEAGRNQ 410

Query: 255 VVCFSDIENNTC 266
           V+  S+ EN++ 
Sbjct: 411 VIADSEKENDSA 422


>gi|218678580|ref|ZP_03526477.1| GGDEF domain-containing protein [Rhizobium etli CIAT 894]
          Length = 182

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 7/152 (4%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIV---FFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL N   F   L     +  +V     D+D+FKQ+ND  GH  GD+++  ++ +L 
Sbjct: 22  DALTGLSNRRRFRQKLEEVARRQGVVGLLTLDLDHFKQVNDTIGHFGGDELLIQVARRLQ 81

Query: 164 VVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                   V RLGG+EFA    G  +E+EA ++A  + + +E    +I SG ++ I+ S 
Sbjct: 82  ACVRAEDEVARLGGDEFAVILGGEINEREARLVAERMLEALERP-FSI-SGQNLTISASI 139

Query: 223 GIAERCHKEPISTIIYR-ADQALYVAKKSGRN 253
           G++ R   +   T IY  AD A+Y  K  GR 
Sbjct: 140 GVSIRPTHDGTVTQIYEIADAAMYAVKAKGRR 171


>gi|66047720|ref|YP_237561.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63258427|gb|AAY39523.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 972

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           E + +  +++ L+  D L+ L N           IS   S  + +S++F D+D FK +ND
Sbjct: 521 ERYDAKKKLTYLAENDSLTHLPNRWFLSNYLREIISRKTSAPDAVSVIFIDLDRFKAVND 580

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LANDLRKI 202
             GH VGD+++     +L    G    V RLGG+EF+     S   E+ I  LA  + + 
Sbjct: 581 TMGHSVGDQLLIQAGRRLKDCIGENSVVARLGGDEFSIVVTHSVYSESLIKSLATHVVEA 640

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           +     N+  G  I ++ S GIA           I+  AD A+Y AKKSGRN
Sbjct: 641 L-GKPFNL-GGQDIFVSASVGIANYPFDGRDTGVILKNADTAMYQAKKSGRN 690


>gi|17548555|ref|NP_521895.1| hypothetical protein RS00710 [Ralstonia solanacearum GMI1000]
 gi|17430803|emb|CAD17485.1| probable signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum GMI1000]
          Length = 894

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 90/171 (52%), Gaps = 12/171 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPV 150
           +Y ++  L   D L+GL N +AFI  L +        + ++++  +D+FK +N+  GH +
Sbjct: 461 TYEQLRLLETKDSLTGLPNRAAFIERLDARLALPSTGQAALLYIGLDHFKTVNEAMGHHI 520

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           G++V+   + ++    G    + RLGG++F  A        A  LA   +++++      
Sbjct: 521 GNQVLNVAAQRIRADVGQRALLARLGGDQFCVAI--DVPDRAETLA---QQVLDALAKPF 575

Query: 211 SSGP-SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           S G   +H++ S G+A         +T++ RA+ A+Y AK++GRNR+  +S
Sbjct: 576 SGGEREVHLSASIGVAMFPEDGSDAATLVSRAEAAMYRAKENGRNRMARYS 626


>gi|323185551|gb|EFZ70912.1| protein gmr [Escherichia coli 1357]
          Length = 605

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 163 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 222

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 223 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMAS--- 279

Query: 201 KIIENSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 280 RILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 339

Query: 259 S 259
           +
Sbjct: 340 T 340


>gi|315180234|gb|ADT87148.1| GGDEF family protein [Vibrio furnissii NCTC 11218]
          Length = 444

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 79/163 (48%), Gaps = 9/163 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+G+LN  AF   L            KL+++F D+D FK IND+ GH VGD+V+
Sbjct: 268 LSEKDPLTGMLNRRAFKEHLHDAIVHANRTGVKLALLFIDLDKFKAINDSKGHDVGDEVL 327

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +  +L        F GR GG+EF    L   +    I A   R I + SQ     G  
Sbjct: 328 MQIGARLEQNIRESDFCGRFGGDEF-VVCLNLIKDFEGITAKTERLIEQLSQPMEVCGEP 386

Query: 216 IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + + +S GI+      + +  ++  AD+A+Y AK +  NR  C
Sbjct: 387 VSVGVSIGISLYPDQSQDMVALLRLADEAMYKAKSAEGNRFFC 429


>gi|299069558|emb|CBJ40830.1| putative signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum CMR15]
          Length = 914

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 81/165 (49%), Gaps = 11/165 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D L+GL N S FI+ L +  E+       L++ F D+D FK +ND  GH  G
Sbjct: 471 RLRHLASHDALTGLTNRSFFIAHLDAAIERARDESRELALFFLDLDRFKSVNDTAGHACG 530

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINI 210
           D ++   + +L    G    + RLGG+EF        E +  A LA  L   +      +
Sbjct: 531 DTLLQSAAARLTDCIGPGDVIARLGGDEFVILIEQRVEGKRIAQLAERLLSAMREPFDTV 590

Query: 211 SSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           +     ++ +S G+A   H     S ++  AD A+Y AK++GRNR
Sbjct: 591 NG--RYYLGVSIGVALYPHDGISGSDLLRSADAAMYRAKQNGRNR 633


>gi|289663282|ref|ZP_06484863.1| putative signal transduction protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 801

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 9/165 (5%)

Query: 104 SRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D ++GL+N           I    S     ++ F D+D+FK +ND FGH VGD+ + 
Sbjct: 370 ARHDAMTGLINRHEIERRLLRLIELPQSPQMCHALCFVDLDHFKLVNDTFGHAVGDRFLC 429

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             +D + +      ++GRLGG+EFA     +   +A ++   +   +     +   G  +
Sbjct: 430 HFADVITMQLRPGDWLGRLGGDEFAILLANTDLAQAQLVLERMHGTLGQPWSH-QGGRPL 488

Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + S G+ E R     ++ ++  AD A + AK+ GRNR+ CF++
Sbjct: 489 TPSCSFGVVEIRQGVSDLNALMTAADLACHAAKEEGRNRIRCFNE 533


>gi|220934318|ref|YP_002513217.1| signal transduction protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995628|gb|ACL72230.1| signal transduction protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 571

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 97/213 (45%), Gaps = 26/213 (12%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           +YIL +NLS +  +I   L        + ++   +   I+ L+  D L+GL+N   F + 
Sbjct: 108 DYILKDNLSRLAPAIDRELR----DHEVRRQNRQAQEAINHLALHDSLTGLINRHGFETR 163

Query: 122 L------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
           L             ++++ D+D FK +ND  GH  GD ++  L+  L +       + RL
Sbjct: 164 LKEALAKARRQRPSALLYIDLDQFKLVNDTCGHQAGDDLLRQLASLLQIPVREHDTLARL 223

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIEN-----SQINISSGPSIHITISAGIAERCHK 230
           GG+EF       + ++A  +A  +  I+ +      + N   G SI +T+          
Sbjct: 224 GGDEFGVLLDECTLEQAEQVARRMLSIVNDFRYTWGEHNFRIGASIGLTLL--------D 275

Query: 231 EP---ISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +P   +S ++  AD A Y AK  GRNRV  F +
Sbjct: 276 DPDLSLSDVMRHADMACYAAKDKGRNRVHLFRE 308


>gi|254286354|ref|ZP_04961312.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|150423521|gb|EDN15464.1| GGDEF family protein [Vibrio cholerae AM-19226]
          Length = 429

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 8/132 (6%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+IND +GH  GD+++  ++  L         + R GGEEF       S +EA  
Sbjct: 299 DIDHFKKINDQYGHITGDRILQAVASCLRKNVRDGDTIIRFGGEEFLLLFQAHSNKEAWH 358

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + + LR+ +++      +  SI  T   G         +   I RAD ALY AK++GRN+
Sbjct: 359 MLDRLRQRVKDDHSLYGTTISIGFTFIDG--------SLPAAISRADAALYQAKEAGRNQ 410

Query: 255 VVCFSDIENNTC 266
           V+  S+ EN++ 
Sbjct: 411 VIADSEKENDSA 422


>gi|254292256|ref|ZP_04963016.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|150421829|gb|EDN13816.1| GGDEF family protein [Vibrio cholerae AM-19226]
          Length = 148

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 70/133 (52%), Gaps = 9/133 (6%)

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           V  DID FK +ND+ GH VGDKV+  +++ L   F +   V RLGG+EF      ++   
Sbjct: 17  VMIDIDGFKAVNDHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETNTAG 76

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYV 246
              +A  +   I+   I++ +      ++S G+A      + H E    ++  ADQA+Y+
Sbjct: 77  GVYIAEQVCCAIQQQVISLENNIRWQGSVSMGVAAFASNMKDHHE----LLRAADQAVYL 132

Query: 247 AKKSGRNRVVCFS 259
           AK SG+NRV  F 
Sbjct: 133 AKNSGKNRVCAFG 145


>gi|320664059|gb|EFX31246.1| putative diguanylate cyclase, GGDEF domain signaling protein
           [Escherichia coli O157:H7 str. LSU-61]
          Length = 135

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 64/128 (50%), Gaps = 4/128 (3%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D D FK IND +GH  GD+V+  L+  L         V R GGEEF      +  
Sbjct: 11  SLLLIDTDRFKHINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPL 70

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
             A  LA  +R  +  ++++IS  P    T+S G+A     E I  +  R D ALY AK 
Sbjct: 71  DTALSLAETIR--VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKN 126

Query: 250 SGRNRVVC 257
            GRNRV+ 
Sbjct: 127 DGRNRVLA 134


>gi|170768910|ref|ZP_02903363.1| putative ggdef domain [Escherichia albertii TW07627]
 gi|170122458|gb|EDS91389.1| putative ggdef domain [Escherichia albertii TW07627]
          Length = 135

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 64/128 (50%), Gaps = 4/128 (3%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D D FK IND +GH  GD+V+  L+  L         V R GGEEF      +  
Sbjct: 11  SLLLIDTDRFKHINDLYGHQKGDEVLCTLAHTLKNCARKSDLVFRWGGEEFVLLLSRTPL 70

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
             A  LA  +R  +  ++++IS  P    T+S G+A     E I  +  R D ALY AK 
Sbjct: 71  DTALSLAEAIR--LSVAKVSISGLPRF--TVSIGVAHHEGNESIDELFKRVDDALYRAKN 126

Query: 250 SGRNRVVC 257
            GRNRV+ 
Sbjct: 127 DGRNRVLA 134


>gi|150377228|ref|YP_001313823.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Sinorhizobium medicae WSM419]
 gi|150031775|gb|ABR63890.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Sinorhizobium medicae WSM419]
          Length = 1071

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 9/169 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQINDN 145
           ++  ++  +++ ++R D L+GL N   F          S + +++++  D+D FK IND 
Sbjct: 637 EDTLLAQKQLAHMARHDMLTGLPNRMFFRECFEQALNESRHARMAVLCLDLDGFKAINDT 696

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKIIE 204
            GHP GD ++  +S +L+    T   V RLGG+EFA    L  S  EA  LA   R I  
Sbjct: 697 LGHPAGDVLLRQVSQRLIQSVRTTETVARLGGDEFAIIQPLAKSRDEAFHLAQ--RLIDT 754

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252
            S+     G +  +  S GIA           +I  AD ALY AK SGR
Sbjct: 755 LSEPFSIEGAAATVGTSIGIAFAPEDGTSADELIKAADIALYSAKSSGR 803


>gi|152966541|ref|YP_001362325.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151361058|gb|ABS04061.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 797

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 14/152 (9%)

Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL N  A   +L  +      +S++  D+D FK++ND FGH VGD+++      L 
Sbjct: 353 DDLTGLANRRALDRTLDEHLRTGRPVSLMLIDLDGFKEVNDRFGHAVGDELLRRAGALLQ 412

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEA----AILANDLRKIIENSQINISSGPSIHIT 219
            V        RLGG+EFA    GSS +EA    A+LA+  +  +      +  G  +   
Sbjct: 413 RVSPPQAVSARLGGDEFAIVLPGSSTEEALALFAVLADATQAPV------LIDGRRLLAR 466

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
            S GIA    + P   ++  AD A+Y AK +G
Sbjct: 467 ASVGIATAAGETP-EQLLRHADAAMYRAKTAG 497


>gi|330501147|ref|YP_004378016.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas
           mendocina NK-01]
 gi|328915433|gb|AEB56264.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas mendocina
           NK-01]
          Length = 323

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 85/177 (48%), Gaps = 13/177 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           ++L     ++ + S  D L+G+ N   F S L +         + LS++  DID+FKQ N
Sbjct: 129 EQLLTLQKQLEEYSYKDGLTGVANRRMFDSVLATEWANAQRTQQPLSLILLDIDHFKQFN 188

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D++GH  GD  +  +   L      P  FVGR GGEEF      + E  A  +A   R+ 
Sbjct: 189 DHYGHVQGDDCLKSVGQALSRAASRPRDFVGRFGGEEFVLVLPETDEAAARHIAERCRQQ 248

Query: 203 IENSQI-NISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   +I +  S  S  +TIS G+       H  P+   +   D+ LY AK+ GR+R+
Sbjct: 249 VRQQRIPHERSSVSSMLTISLGVGTIVPGAHDRPLD-FLNSVDKLLYQAKQRGRDRL 304


>gi|328542857|ref|YP_004302966.1| Cyclic diguanylate phosphodiesterase domain protein [polymorphum
           gilvum SL003B-26A1]
 gi|326412603|gb|ADZ69666.1| Cyclic diguanylate phosphodiesterase domain protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 516

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 90/194 (46%), Gaps = 15/194 (7%)

Query: 80  LLLGYISGSILKE----LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLS 130
           L LG+ +   L E    L  S  R   ++  D L+GL N   F   L +     +    +
Sbjct: 302 LALGWAAARKLAERSRALEESERRNRHMALHDSLTGLGNRVYFGEKLDAALAACHARPCA 361

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D FK +ND+FGH  GD VI  ++ +L         V R GG+EF A    + E+
Sbjct: 362 VLAIDLDRFKAVNDSFGHDAGDMVIRTVARRLQQALSGSGLVARTGGDEFLALVTETVEE 421

Query: 191 EAAILANDLRKIIENSQINISSG---PSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
                  D   IIE +   I  G     I  +I   +A R + +  S ++  ADQ+LY A
Sbjct: 422 SHIRWLCD--TIIEEATKPIPVGGGIARIGASIGWALAPR-NGDTASMVLRMADQSLYRA 478

Query: 248 KKSGRNRVVCFSDI 261
           K++GRN  V   D+
Sbjct: 479 KEAGRNMAVFIEDL 492


>gi|323491480|ref|ZP_08096663.1| PAS/GGDEF domain-containing protein [Vibrio brasiliensis LMG 20546]
 gi|323314264|gb|EGA67345.1| PAS/GGDEF domain-containing protein [Vibrio brasiliensis LMG 20546]
          Length = 679

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 84/173 (48%), Gaps = 17/173 (9%)

Query: 104 SRIDCLSGLLNHSAFISSLGS--YNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + +D L+GL N   F   L    +N+  L +++ DID FK IND+ GH +GDKVI  +S 
Sbjct: 253 AHLDSLTGLYNRFGFTKRLEQLIHNDTALIMLYLDIDNFKNINDSLGHHIGDKVIKEVSS 312

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------ 214
           +L  +      +G LGG+EF    L   E       N + +++    I++ + P      
Sbjct: 313 RLKRLLPQHAILGHLGGDEF-GIILPEPEN------NRMAEMLSERIISLVNQPFDLHHF 365

Query: 215 SIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           S  +  S G +A          ++  AD A+Y AK  GRNR++ F+D  N   
Sbjct: 366 SKRLACSIGSVAYPGDGNDARILLQNADTAMYEAKDRGRNRLIKFNDQMNKEA 418


>gi|209524330|ref|ZP_03272879.1| diguanylate cyclase [Arthrospira maxima CS-328]
 gi|209495121|gb|EDZ95427.1| diguanylate cyclase [Arthrospira maxima CS-328]
          Length = 151

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 74/141 (52%), Gaps = 8/141 (5%)

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-----PMFVGRLGGEEFA 181
           + +S++  DID+FK  NDN+GH  GD  +  ++  +           P    R GGEEFA
Sbjct: 11  QPISLILLDIDFFKPYNDNYGHLAGDLCLPRIAKAIQEAITASHKQKPYLAARYGGEEFA 70

Query: 182 AAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKEPIST--IIY 238
               G   +EA  +AN +R K++  +  +  S     IT+SAG+A +   + +S   +I 
Sbjct: 71  IILPGLKLKEALNVANQIRLKVLAKNIPHCGSEIGSCITLSAGVASQIIGDDLSPEDLIL 130

Query: 239 RADQALYVAKKSGRNRVVCFS 259
            AD+ L  AK SGRNRV+  S
Sbjct: 131 SADRGLDQAKNSGRNRVLSES 151


>gi|253700150|ref|YP_003021339.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M21]
 gi|251775000|gb|ACT17581.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M21]
          Length = 316

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 13/172 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+ L NH  F       ++    Y ++ S++F D+D FK  ND  GHP GD
Sbjct: 147 LKELAVRDGLTALYNHRYFQEAFVLEVARSKRYGKQCSLIFMDVDNFKMYNDTNGHPQGD 206

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLR-KIIENSQINI 210
            ++  L+  +           R GGEEF    L  + +EAA+ +A +LR ++  +     
Sbjct: 207 ALLKTLARLMTTHLRICDTAARYGGEEF-VLLLPETPKEAALGVAEELRVRVAAHPFPGG 265

Query: 211 SSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            + P   +TIS G+A   R   E    + + ADQ LY AK SG+N VV   D
Sbjct: 266 ETQPLGKVTISIGVAGYPRDGVEAPELLDF-ADQLLYKAKNSGKNMVVWEKD 316


>gi|170690939|ref|ZP_02882105.1| diguanylate cyclase [Burkholderia graminis C4D1M]
 gi|170144188|gb|EDT12350.1| diguanylate cyclase [Burkholderia graminis C4D1M]
          Length = 405

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 26/202 (12%)

Query: 70  SLVIISITISLLLGY---ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--S 124
           +LV I++ +  L+GY   +       +    N + Q +  D L+GL N    +S++   S
Sbjct: 192 ALVAIAVLVCCLMGYTVYVQRRAFARVHAYSNMLDQQAAQDTLTGLPNRRRLLSAIDALS 251

Query: 125 YNE----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            NE    ++++++ DID FK++ND  GH  GD ++  L++ L         + R+GG+EF
Sbjct: 252 GNEAESRRIALLYLDIDGFKKVNDAMGHSAGDVLLRRLAESLRAATRQSDTLARVGGDEF 311

Query: 181 A--AAALGSSEQEAAILANDLRKIIENSQINISS------GPSIHITISAGIAERCHK-E 231
              A   G   Q        LR++ E     + +      G    I +S GIA    + +
Sbjct: 312 VLLATDCGDDAQ--------LRELAERLVSGVRAIGDKEYGGRFAIGVSIGIATFPDRVQ 363

Query: 232 PISTIIYRADQALYVAKKSGRN 253
            I+ ++  AD A+Y AK+SGR+
Sbjct: 364 SIAGLLDVADAAMYAAKRSGRS 385


>gi|157376276|ref|YP_001474876.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157318650|gb|ABV37748.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 293

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 21/173 (12%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148
            ++ +SQ +  D L+ L N   ++ SL         Y+  LS++  D+D FK++ND +GH
Sbjct: 127 QFHEMSQQAMYDSLTKLGNRHYYMESLKKAIATAKRYSNDLSLIVLDLDNFKKLNDRYGH 186

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V++     L           R+GG+EF     G  +Q A+IL     +I+     
Sbjct: 187 QFGDNVLSEFGQLLTGAIRNTDQAFRIGGDEFVVVVRG-DKQAASILCE---RILS---- 238

Query: 209 NISSGP---SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           ++SS P      I  S G+++  + E  S +  RAD+ALY AK +GR    CF
Sbjct: 239 SMSSLPLFEKHEIQTSLGVSQWINGEVPSALYERADRALYRAKAAGRQ---CF 288


>gi|117619354|ref|YP_858423.1| PAS:GGDEF, putative [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117560761|gb|ABK37709.1| pas:GGDEF, putative [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 536

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 6/169 (3%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           L E+   Y    Q + +D L+GL N   F   ++ L   ++   +   D+D FK++ND F
Sbjct: 345 LAEVSKDYYEARQQANLDKLTGLYNRRFFDERVNRLLFEHQPFCLAMVDLDDFKRVNDTF 404

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD V+  +S   + + G   +V R GGEE     +        +L    RK +E+ 
Sbjct: 405 GHQTGDVVLKRVSKLGMRLLGDHGWVCRYGGEELVVLLVNPDIHFCQMLLEQFRKGVESL 464

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                  P + IT S G+          T++  AD  +Y AK+ G+NR+
Sbjct: 465 DWR---EPELRITFSGGLVASQAGMDGKTLLEIADAEVYRAKRDGKNRI 510


>gi|92112928|ref|YP_572856.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Chromohalobacter salexigens DSM 3043]
 gi|91796018|gb|ABE58157.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Chromohalobacter salexigens DSM 3043]
          Length = 781

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 88/167 (52%), Gaps = 14/167 (8%)

Query: 106 IDCLSGLLN----HSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+GL N    +  F   L +  ++   +S+ F D+D FK IND+ GH VGD V+  +
Sbjct: 359 IDGLTGLPNRRLLNDLFQEELAAVRQRRGSISVCFLDLDGFKSINDSQGHAVGDNVLKCV 418

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +D+L         V RLGG+EF   A+    +   +  + L ++     I+   G  + +
Sbjct: 419 ADRLRGAVRHHDVVARLGGDEF--VAILRDVEHPRVYRHILDQLRRPMHIH---GHPLEL 473

Query: 219 TISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDIENN 264
           + S GI    + +  S ++ R ADQA+Y AK+SG+N    F D+E++
Sbjct: 474 SASMGITRYPNDDSDSDLLLRHADQAMYTAKESGKN-CYHFFDLESH 519


>gi|88704792|ref|ZP_01102505.1| protein containing EAL/GGDEF/PAS domains [Congregibacter litoralis
           KT71]
 gi|88701113|gb|EAQ98219.1| protein containing EAL/GGDEF/PAS domains [Congregibacter litoralis
           KT71]
          Length = 810

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 21/173 (12%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL----------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +  ++  D L+GL+N S F   L          G++   L++ + D+D FK +ND+FGH 
Sbjct: 362 LETIAHFDPLTGLVNRSLFEDRLYQAVATSERQGTF---LALAYIDLDGFKLVNDSFGHA 418

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQ 207
           VGD+ +  ++D +         + R+GG+EF A  + L   E  A ++    R +   S+
Sbjct: 419 VGDRYLIAIADNMNEALRDTDTLARIGGDEFIALISDLDDPEGFAPVVE---RLLQATSK 475

Query: 208 INISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCF 258
             +  G  I ++ S GIA       EP  +++  ADQA+Y AK+ G+NR   F
Sbjct: 476 PVMLEGQEIPVSASIGIARFPLDGLEP-GSLVRCADQAMYEAKRQGKNRFYVF 527


>gi|325282595|ref|YP_004255136.1| diguanylate cyclase/phosphodiesterase [Deinococcus proteolyticus
           MRP]
 gi|324314404|gb|ADY25519.1| diguanylate cyclase/phosphodiesterase [Deinococcus proteolyticus
           MRP]
          Length = 866

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 9/150 (6%)

Query: 107 DCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GLLN  A    L +       + ++++F D+D+FKQIND  GHPVGD+++  ++ +
Sbjct: 426 DALTGLLNRPALERQLQAVCRDTPPQGMAVLFIDLDHFKQINDTLGHPVGDQLLQEVAGR 485

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITI 220
           L         V R GG+EF    L  S Q +A      + ++E   I  I+ G  + I+ 
Sbjct: 486 LRRSVQPGDEVARQGGDEF--TVLLRSVQNSAQAEQAAQHLLEQLSIPVIAGGHPLFISA 543

Query: 221 SAGIAE-RCHKEPISTIIYRADQALYVAKK 249
           S GIA    H   ++T+   AD ALY AK+
Sbjct: 544 SIGIALFPQHGTDVTTLQKHADLALYRAKQ 573


>gi|307267636|ref|ZP_07549101.1| diguanylate cyclase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917346|gb|EFN47655.1| diguanylate cyclase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 118

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 60/121 (49%), Gaps = 4/121 (3%)

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            FD+D+FK++ND FGH  GD V+  ++D +           R GGEEF      +S   A
Sbjct: 1   MFDLDHFKKVNDRFGHAAGDMVLKSVADTVKERIRKTDCFARWGGEEFIILLPETSLNNA 60

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             LA +LRK I   ++         +T S G+ E    + I T++ R D  LY AK  GR
Sbjct: 61  VDLAEELRKQISRMELQGIG----DVTASFGVTEYRDTDTIDTVLIRVDNMLYEAKGEGR 116

Query: 253 N 253
           N
Sbjct: 117 N 117


>gi|217969746|ref|YP_002354980.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
 gi|217507073|gb|ACK54084.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
          Length = 843

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 15/171 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +  S L+  D L+GL N       L          + L +   D+D FK +ND+ GH  G
Sbjct: 667 DHFSSLANFDALTGLPNRRLLDDRLQQAVGNARRGKPLVVCMLDLDGFKPVNDSVGHAEG 726

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ--IN 209
           D+++  L+ ++  +      + RLGG+EF    +    + A      L +++E ++  + 
Sbjct: 727 DRLLVELAQRMQHILRAGETLARLGGDEFVLLLVDGDFRPA------LERVLEVTRAPVA 780

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +S G    +T S G +   H  E  + ++  ADQALY AK++GRNR V F+
Sbjct: 781 LSGGRFARVTASIGASAYRHGVEDGAQLLREADQALYRAKRAGRNRWVMFA 831


>gi|254517292|ref|ZP_05129349.1| sensory box/ggdef domain protein [gamma proteobacterium NOR5-3]
 gi|219674130|gb|EED30499.1| sensory box/ggdef domain protein [gamma proteobacterium NOR5-3]
          Length = 209

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 4/130 (3%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS++  DID+FK +ND +GH +GD  +  +++    V      V R GGEEF      +S
Sbjct: 80  LSMMAVDIDFFKAVNDRYGHHIGDLALKKVAELCQSVTREYDLVSRTGGEEFTVLLPHTS 139

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYV 246
            ++A  LA  +R  I  S   + +   I +T+S G+A     H + I  +   AD ALY 
Sbjct: 140 LEQAHALAERMRCAIAES-CAVLNEHEIKLTVSIGVAALLSAH-QSIEELSQLADDALYR 197

Query: 247 AKKSGRNRVV 256
           AK +GRNRV+
Sbjct: 198 AKNAGRNRVI 207


>gi|87118430|ref|ZP_01074329.1| sensory box protein [Marinomonas sp. MED121]
 gi|86166064|gb|EAQ67330.1| sensory box protein [Marinomonas sp. MED121]
          Length = 809

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 13/172 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
           N I Q + +D L+ L N   F + L S  +K       +++++ D+D FK IND +GH V
Sbjct: 356 NIIWQEANLDSLTNLPNRRNFKNELKSSLDKAKHDKLTVALLYLDLDDFKAINDFYGHDV 415

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQIN 209
           GDK++   +++LV        + RLGG+EF   A   +S +E   L+   + I+E+    
Sbjct: 416 GDKLLIEAANRLVKTVNKTFGIFRLGGDEFTIIAENLTSYKEIETLS---QTILESLSAP 472

Query: 210 IS-SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            S +  S++I+ S GI+    H     T++  AD+A+Y +K  GRN+   F+
Sbjct: 473 YSINKESLYISASIGISLYPEHTSKSDTLLRYADEAMYSSKALGRNQYQIFT 524


>gi|127514344|ref|YP_001095541.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella loihica PV-4]
 gi|126639639|gb|ABO25282.1| diguanylate cyclase/phosphodiesterase [Shewanella loihica PV-4]
          Length = 857

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 9/169 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++ + +  D ++GLLN  AF   L ++ E    L+I +FD++ FK IND+ GH  GD +
Sbjct: 423 HQLRRRANFDNVTGLLNRCAFEERLQAFAEDAQTLAICYFDLEQFKLINDSCGHNAGDAM 482

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQINISS 212
           +  ++  +         + RLGG+EF    L   +     LA  +++II     Q+    
Sbjct: 483 LKMVAKAIQASLEGQGLLARLGGDEF---GLALKDLGVVPLAQQVKQIINAVGKQVMEHH 539

Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           G   H+ ISAG+A  R        ++  AD A   AK+ G N+V  + D
Sbjct: 540 GCHYHVGISAGVALARAPYINALELLKDADIACIAAKRKGSNQVHFYDD 588


>gi|299530044|ref|ZP_07043471.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298722024|gb|EFI62954.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 388

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 9/156 (5%)

Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ +LN   F       +     + LSIV  D+D+FK++NDN+GH  GD V+  +++ 
Sbjct: 225 DMLTRVLNRRGFWELADPLARDRKAQPLSIVVADLDHFKRVNDNWGHEYGDGVLKAVAEV 284

Query: 162 LVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
           +   V GT + V R GGEEF      +  + A  +A  +R         +  G    +T+
Sbjct: 285 IQASVRGTDL-VARFGGEEFVLLLTHADIETAQRVAQRIRAGAVEIIAPLPDGQ--RVTL 341

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S G+        +   + RADQ LY AK+ GR++VV
Sbjct: 342 SMGVVVSPFGSDLREALMRADQQLYKAKELGRDQVV 377


>gi|262172940|ref|ZP_06040617.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           mimicus MB-451]
 gi|261890298|gb|EEY36285.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           mimicus MB-451]
          Length = 356

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 91/193 (47%), Gaps = 22/193 (11%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YN 126
           ++I+ S  + Y+    L++L   +  +  LS  D L+G LN     S L          N
Sbjct: 150 LAISASAAIMYVVVDALRKL---HAELFYLSTRDALTGTLNRHQLDSFLRKSIQRCQFAN 206

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM----FVGRLGGEEFAA 182
           E   I   DID FK IND +GH  GDKVI     Q+V +  T       + RLGG+EF  
Sbjct: 207 EFSVIAVIDIDNFKTINDMYGHDTGDKVIT----QVVEIINTNSRELDLLFRLGGDEFLL 262

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
               +S  EA ++ + +   I+ +     +     +T+S G+AE    +       RAD 
Sbjct: 263 LFENTSLTEATMVMSHIGCRIQKTHYPKHA----EVTVSVGLAEVLKNDDPEVWFKRADL 318

Query: 243 ALYVAKKSGRNRV 255
           +LY +KK G+NRV
Sbjct: 319 SLYHSKKMGKNRV 331


>gi|90410929|ref|ZP_01218943.1| putative transcriptional regulator [Photobacterium profundum 3TCK]
 gi|90328142|gb|EAS44453.1| putative transcriptional regulator [Photobacterium profundum 3TCK]
          Length = 410

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 17/170 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +++ +++  D L+GL N   F +       +  +I   DID+FK++ND +GH  GD V+ 
Sbjct: 249 DKLYKMANQDTLTGLWNRRYFFNQQCDKGCQHRNIAMMDIDFFKKVNDTYGHDGGDVVLI 308

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS---- 212
            +S +L+        V R GGEEF   A G+            ++ +E  +++I +    
Sbjct: 309 HVS-RLIQTRFEDAIVARFGGEEFCIQACGAFSH--------FQQRLEQLRVDIEALCIP 359

Query: 213 --GPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               +I++T+S G ++       I  ++  AD  LY AK+ GRN+VV  +
Sbjct: 360 YLDNTINVTMSIGAVSGAAQSHAIDDMLRTADDHLYYAKEHGRNQVVAHA 409


>gi|313105724|ref|ZP_07791987.1| hypothetical protein PA39016_000110021 [Pseudomonas aeruginosa
           39016]
 gi|310878489|gb|EFQ37083.1| hypothetical protein PA39016_000110021 [Pseudomonas aeruginosa
           39016]
          Length = 661

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 13/154 (8%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N  AF   LG       S   +L++++ D+D FK++ND FGH VGD ++  ++
Sbjct: 500 DPLTGLGNRKAFDEQLGQALLRAGSGGSELALLYLDLDRFKEVNDRFGHDVGDALLRTVA 559

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQINISSGPSIH- 217
           +++      P    RLGG+EFA     S E     LA   L  +++   +N   G  I  
Sbjct: 560 ERVRSTLRQPDKAYRLGGDEFAVLLEDSQENNPQRLAERLLAALVQPIALN---GERIDF 616

Query: 218 ITISAGIA-ERCHKEPISTIIYRADQALYVAKKS 250
           +T S GIA    H      ++  AD A+Y AK+ 
Sbjct: 617 VTPSIGIALYPRHAGDAEGLVRAADSAMYEAKRQ 650


>gi|153823750|ref|ZP_01976417.1| ggdef family protein [Vibrio cholerae B33]
 gi|126518732|gb|EAZ75955.1| ggdef family protein [Vibrio cholerae B33]
          Length = 180

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 8/135 (5%)

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              DID+FK+IND +GH  GD+++  ++  L         + R GGEEF       S +E
Sbjct: 47  AMIDIDHFKKINDQYGHITGDRILQAVASCLRKNVRDGDTIIRFGGEEFLLLFQAHSNKE 106

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A  + + LR+ +++      +  SI  T   G         +   I RAD ALY AK++G
Sbjct: 107 AWYMLDRLRQRVKDDHSLYGTTISIGFTFIDG--------SLPAAISRADTALYQAKEAG 158

Query: 252 RNRVVCFSDIENNTC 266
           RN+VV  S+ EN++ 
Sbjct: 159 RNQVVADSEKENDSA 173


>gi|150020686|ref|YP_001306040.1| diguanylate cyclase [Thermosipho melanesiensis BI429]
 gi|149793207|gb|ABR30655.1| diguanylate cyclase [Thermosipho melanesiensis BI429]
          Length = 305

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 89/202 (44%), Gaps = 27/202 (13%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-- 123
           VEN  L+I + T             +E+ I   ++ +LS  D L+GL N   F  S    
Sbjct: 120 VENTELIIKNKT-------------REIEIKNEKLRELSIKDELTGLYNRRFFNESFPKD 166

Query: 124 ---SYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF---GTPMFVGRL 175
              ++ EK+ + F   D+D FK IND +GH  GD+ +   S      F       F  R 
Sbjct: 167 CSLAFREKMYVNFAIIDLDDFKVINDTYGHQAGDECLRVFSKMFKESFHRESDKYF--RY 224

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPIS 234
           GGEEF    +   +          RK +E   I   +G  I  TIS G+ E   +     
Sbjct: 225 GGEEFVVYYISKEKTNFFEKLEKFRKEVE-RHILEYNGEKITFTISIGVVEEKQETSRYQ 283

Query: 235 TIIYRADQALYVAKKSGRNRVV 256
            II +AD+ LY+AK  G+N VV
Sbjct: 284 DIISKADKNLYIAKNKGKNIVV 305


>gi|113971961|ref|YP_735754.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-4]
 gi|113886645|gb|ABI40697.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-4]
          Length = 1504

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 85/160 (53%), Gaps = 11/160 (6%)

Query: 103  LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            L+  D L+GL N + F       IS     N  ++++F D+D FK IND+ GH +GD ++
Sbjct: 1077 LASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDLLL 1136

Query: 156  AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGP 214
              ++ +L         V RLGG+EF     G ++ +AA L ++  K+++  Q   +    
Sbjct: 1137 KAVAHRLQSAVREGDTVARLGGDEFTIILEGVAKTKAATLISE--KVLKAFQAPFLLDDK 1194

Query: 215  SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
            S+ I+ S GI+   +  E + ++I  AD A+Y AK  GRN
Sbjct: 1195 SLTISTSIGISLYPNDAEDVDSLIKFADTAMYHAKALGRN 1234


>gi|77920527|ref|YP_358342.1| signal transduction protein [Pelobacter carbinolicus DSM 2380]
 gi|77546610|gb|ABA90172.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pelobacter carbinolicus DSM 2380]
          Length = 1141

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 85/175 (48%), Gaps = 15/175 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  L+  D L+GL N   F       I+    ++E  +++F D+D FK IND+ GH  GD
Sbjct: 688 IEHLAFHDPLTGLANRLLFMDRIEQAIAHAHRHHESFALMFLDLDRFKTINDSLGHSAGD 747

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILAND-LRKIIENSQINI 210
             +  ++ +L         V R GG+EF     G S E+E  ++A+  L+ +     IN 
Sbjct: 748 AALKEVAQRLTTCLRETDTVSRFGGDEFNVLLSGPSHEEEIELIAHKILKSLAWPYDIN- 806

Query: 211 SSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                + +T S GIA   +  +E I T++  AD ALY AK  GRN    +S   N
Sbjct: 807 --DHEVFMTCSIGIASYPKDGREAI-TLVKNADTALYRAKDLGRNNFQFYSSSMN 858


>gi|77747899|ref|NP_638079.2| response regulator [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|77761150|ref|YP_242472.2| response regulator [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 494

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 12/178 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           L+ +  +  R+S    +D L+G+ N  AF   L             LS++  D+D+FK  
Sbjct: 315 LRRMHRNEARLSSEVWVDALTGIANRRAFDHRLSEALQDAVHTQAPLSVLMIDVDHFKLY 374

Query: 143 NDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR- 200
           ND +GH  GD  +  ++  +      +     R GGEEF      +    A  LA+ +R 
Sbjct: 375 NDTYGHVNGDACLRLIAGAIAGCARRSDDIAARYGGEEFGMILPHTDVAGALRLADAIRT 434

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
            + E   ++++S  S H+T+S G A     + P++   I+  AD ALY AK+ GR+R 
Sbjct: 435 AVAELGLMHLTSPTSAHVTVSVGAATFEPGETPLTPDAIVRDADGALYRAKQGGRDRT 492


>gi|94312895|ref|YP_586104.1| putative response regulator of a two-component system [Cupriavidus
           metallidurans CH34]
 gi|93356747|gb|ABF10835.1| putative response regulator of a two-component system [Cupriavidus
           metallidurans CH34]
          Length = 335

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+ L N   F   LG+          +L+++  D+D FK  N
Sbjct: 157 QQLLETNLELQRLTNSDGLTSLSNRRYFDEYLGAEWKRAQREQTQLALLMIDVDAFKGYN 216

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+V+  ++  +      P     R GGEEF+     +S   A +LA  +R+ 
Sbjct: 217 DTYGHVAGDEVLRRVAAVIRENCARPADLPARFGGEEFSMILPATSPGGARLLAEKVRRA 276

Query: 203 IENSQINISSGPS---IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           IE  +I  +  P+   + ++I   +         S +I  AD  LY AK++GRN+VV
Sbjct: 277 IETLRIPHACSPTGGFVTVSIGGAVIVPGGDADFSRLIEAADAGLYQAKRNGRNQVV 333


>gi|326402713|ref|YP_004282794.1| hypothetical protein ACMV_05650 [Acidiphilium multivorum AIU301]
 gi|325049574|dbj|BAJ79912.1| hypothetical protein ACMV_05650 [Acidiphilium multivorum AIU301]
          Length = 661

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 18/200 (9%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-----ISSLGSYNEKLSI 131
           T++  L  +    L+ L  S  RI  L+  D L+GL N + F      +        +++
Sbjct: 201 TVAGFLAVVRSRSLR-LQASEVRIHHLAFHDPLTGLPNRTFFNESADAALAALSGTSIAL 259

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +F D+D FKQ+ND  GHP GD +I     +L  +      V R+GG+EF     G + +E
Sbjct: 260 LFLDLDRFKQVNDTLGHPAGDTLIREFGARLRALVREEDMVARVGGDEFTVMLAGVAGRE 319

Query: 192 AAILANDLRK----IIENSQINIS-SGPSIHITISAGIA-ERCHKEPISTIIYRADQALY 245
                 D+ K    I+E+ ++     G  + + +S G+A    H      ++ +AD ALY
Sbjct: 320 ------DVEKLCARIVESVRVPFDLDGNRVFVGLSIGVALAPDHGTDRIDLLRKADIALY 373

Query: 246 VAKKSGRNRVVCFSDIENNT 265
            AK +GR R   F  + ++ 
Sbjct: 374 SAKSTGRGRFAFFDPVMDDA 393


>gi|307727371|ref|YP_003910584.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1003]
 gi|307587896|gb|ADN61293.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1003]
          Length = 657

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 9/166 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+ ID L+ L N  +F +SL + +E+        ++   D+D FKQ+ND +GH  GD V
Sbjct: 223 RLASIDSLTDLPNRRSFFASLRALSEQALASGGGFNVGLIDLDGFKQVNDIYGHASGDLV 282

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +  +L+ +    +F  RLGG+EF   A     +E A+L    R     SQ    +G 
Sbjct: 283 LQEVGARLLALAEPGIFFARLGGDEFGVLAQDRQSKE-ALLELGQRICDSLSQPYRVAGN 341

Query: 215 SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
              ++ + G A      + ++ +  RAD A+YV K+S R   V FS
Sbjct: 342 IAELSGTIGWAAFPDAGQTVTQVFERADAAMYVGKESRRGTAVIFS 387


>gi|251772918|gb|EES53477.1| Diguanylate cyclase [Leptospirillum ferrodiazotrophum]
          Length = 371

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/148 (37%), Positives = 80/148 (54%), Gaps = 8/148 (5%)

Query: 106 IDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           +D LS L+  +  IS +      LSI   DID FK IND  GH  GD+V+A + + +  V
Sbjct: 205 LDHLSRLMAQAERISGM-----TLSIALLDIDDFKSINDQDGHQSGDQVLAMIGESIRSV 259

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                   RLGGEEF     G S +EA  LA +LR+ IE      S+G    +T+S G+ 
Sbjct: 260 IRKGDIFVRLGGEEFLLLLPGLSLKEADPLAENLRRRIEEGVFR-SNG--TRVTVSIGLT 316

Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRN 253
           +    EP++ ++ RAD  +Y AK+ G+N
Sbjct: 317 QYRTGEPMAELLRRADNLMYSAKRGGKN 344


>gi|224825197|ref|ZP_03698303.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
 gi|224602868|gb|EEG09045.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
          Length = 709

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 88/167 (52%), Gaps = 11/167 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
           + +R++ L+  D L+GL N + F   LG           +++++F D+D FK  ND FGH
Sbjct: 270 AEHRMAYLAYHDLLTGLPNRALFRDRLGLAIMQAKRKGRQVAVLFVDLDRFKLANDTFGH 329

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQ 207
             GD+++  +  +L  V      + RLGG+EF       S +++AA+LA  L K +  + 
Sbjct: 330 IKGDELLKQVGQRLQCVLRECDTLARLGGDEFTILLPDLSGKEDAALLAGKLVKEV-AAP 388

Query: 208 INISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
            +I  G  + +T+S GIA      + I T++  AD A+Y  K  G+N
Sbjct: 389 FSI-DGDDVFLTVSIGIAVFPDDGDDIETLLRHADIAMYQVKAQGKN 434


>gi|153832088|ref|ZP_01984755.1| VbsG [Vibrio harveyi HY01]
 gi|148871703|gb|EDL70544.1| VbsG [Vibrio harveyi HY01]
          Length = 453

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 10/161 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154
           N IS  ++ D L+GL N   F   +     +    S++  D D  K+IND +GH VGD+V
Sbjct: 300 NAISNATK-DELTGLSNRKVFREEVLKRRLRSAPYSVIAIDGDRLKRINDKYGHHVGDEV 358

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +++ +  VF +  ++ R GG+EF A     +   A  LA  L+ +++++ +      
Sbjct: 359 LVIVANAMRKVFRSSDYLVRTGGDEFVAILPDCNFGNANALAKKLQNLVQDNPL---KKM 415

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  ++S GIA     E +  +I RAD+ LY  K   R RV
Sbjct: 416 GVEASVSTGIAIAEENESLQDVIMRADEELYETK---RQRV 453


>gi|78067162|ref|YP_369931.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. 383]
 gi|77967907|gb|ABB09287.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. 383]
          Length = 730

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 12/202 (5%)

Query: 62  EYILVENLSLVIIS-ITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +Y    N+ L++ S IT+++L   G  +G I K L      ++QL+  D L+GL N  A 
Sbjct: 242 DYYHTRNVYLLMTSFITLAMLAFFGVATGLIGK-LLGREREMTQLAEYDLLTGLANRYAT 300

Query: 119 IS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           +       S+ +   +L ++F D+D FK +ND  GH  GD V+   + +L    G    +
Sbjct: 301 LRGLRNDVSMPASLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTASRLSDAVGDEGSL 360

Query: 173 GRLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
            R+GG+EF     G   E+ A  LA  + ++         S   +H +I   +    ++ 
Sbjct: 361 ARIGGDEFVVVMKGDDVERRAVRLAEAIIRMFGEPFDVRGSSFVLHASIGIALHSVANES 420

Query: 232 PISTIIYRADQALYVAKKSGRN 253
            I  ++ +AD A+Y AK +G+N
Sbjct: 421 EID-LLKKADLAMYSAKDAGKN 441


>gi|50121361|ref|YP_050528.1| putative signaling protein [Pectobacterium atrosepticum SCRI1043]
 gi|49611887|emb|CAG75336.1| putative signaling protein [Pectobacterium atrosepticum SCRI1043]
          Length = 722

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 102/200 (51%), Gaps = 23/200 (11%)

Query: 70  SLVIISITISLLLGYIS---GSILK---ELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           SLV + +++S+     +   G+IL+   E   +  R+  L+ +D L+GL N +   S+L 
Sbjct: 256 SLVPVELSVSMWEDNDNVSYGAILRDITERRRNEERLFLLAHMDPLTGLANRTLLTSNLE 315

Query: 124 S--YNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           +   NE  + I+  D+D FK +ND+ GH  GD ++  ++ ++     +   V R+GG+EF
Sbjct: 316 TALKNEPAVCIMMVDLDGFKDVNDSLGHSSGDDILVHVAKKIKAAVRSGDVVARMGGDEF 375

Query: 181 AAAALGSSEQE-AAILANDL------RKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           A    G S+++ A  +A  +        II++ QINIS+     +    G+        +
Sbjct: 376 ALLFPGLSDKKVAGKIAEQIIHEISQAMIIDDHQINISASIGAVLYPDYGLT-------V 428

Query: 234 STIIYRADQALYVAKKSGRN 253
             ++  AD ALY AK  GRN
Sbjct: 429 QDLLTSADLALYQAKSEGRN 448


>gi|13471756|ref|NP_103323.1| hypothetical protein mlr1828 [Mesorhizobium loti MAFF303099]
 gi|14022500|dbj|BAB49109.1| mlr1828 [Mesorhizobium loti MAFF303099]
          Length = 614

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 81/173 (46%), Gaps = 20/173 (11%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +I  L+  D L+GL N      ++         +EKL++   D+D FK +ND  GHP+GD
Sbjct: 184 QIQHLATHDILTGLPNRGLLADTMDEALRSLRDDEKLAVHCVDLDRFKPVNDTLGHPIGD 243

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKI------IEN 205
           +++  ++ +L    G    V R+GG+EF     L     EA +LA+ +         I+ 
Sbjct: 244 QLLGAVAKRLKHHAGETAMVARIGGDEFVILQLLLDGNDEAGVLASRVIHALSDEFSIQG 303

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +INI  G SI I +     +        T+I  AD ALY AK  GR     F
Sbjct: 304 HKINI--GGSIGIAVFPDDGQNSE-----TLIRNADLALYKAKMEGRGTCRSF 349


>gi|328951312|ref|YP_004368647.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451636|gb|AEB12537.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Marinithermus hydrothermalis DSM 14884]
          Length = 690

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 10/152 (6%)

Query: 107 DCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN         A +++L + NE  +++F D+D FK++ND  GH  GD+ +  ++
Sbjct: 274 DPLTGLLNRRGLEEKGRALLAALQTRNEPAALIFLDLDRFKEVNDTLGHTAGDQALIEVA 333

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +L           R+GG+EFA    G+    A  +A  L+K +E + + +  G +  + 
Sbjct: 334 HRLKATARRTDLTARVGGDEFALLLPGADATTAQQVARRLQKALE-APVEL-EGRAFILG 391

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250
            S G+A      + +  +I  AD A+Y AK S
Sbjct: 392 ASLGVARFPEDAQDLDGLIRAADVAMYAAKHS 423


>gi|126437388|ref|YP_001073079.1| diguanylate cyclase [Mycobacterium sp. JLS]
 gi|126237188|gb|ABO00589.1| diguanylate cyclase [Mycobacterium sp. JLS]
          Length = 286

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 80/157 (50%), Gaps = 11/157 (7%)

Query: 107 DCLSGLLN------HSAFISSLGSYN--EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+GLLN      HSA + + G  +    L +V  D+D FK+IND +GH VGD+ +  +
Sbjct: 123 DPLTGLLNRRAFYAHSAKLLTGGPSHGGTHLVMVVVDLDDFKRINDTYGHQVGDEALISV 182

Query: 159 SDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
              L   V G P  +GR GGEEF  AA+  ++  A +      +I    +   +S  +  
Sbjct: 183 GQALSRAVVGFPAEIGRSGGEEFVVAAVLETDDPAPLAEQICGEIAALPEPVTASVGTAC 242

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           I + A      H+  +  ++  AD A+Y AK++G N+
Sbjct: 243 IALDASRGN--HESTLDRMVRAADAAMYEAKRAGGNK 277


>gi|325123510|gb|ADY83033.1| chemotaxis protein methyltransferase CheR [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 366

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 18/187 (9%)

Query: 82  LGYISGSILKELFISYNRISQLSRI-------DCLSGLLNHSAFISSL------GSYNEK 128
           L  +   +L+E+ I  N++ + +R        D L+ L N   F   L        ++ K
Sbjct: 175 LNTVFNELLEEIQIWDNQLQKENRKLSFQAHHDQLTLLPNRHYFYQILLDMFEDKGFDNK 234

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALG 186
            +++F D + FK IND FGH  GD+V+  ++++L        F+ RLGG+EFA    ++ 
Sbjct: 235 SALLFIDNNNFKAINDQFGHLAGDEVLKEMANRLQTRLRHQDFIARLGGDEFAVILHSIS 294

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
            ++   +I  N L    E   +N   G +I+ + S GIA           I +ADQA+Y 
Sbjct: 295 HADHLISIAENLLESCKEPLHLN---GQTIYFSFSVGIALSQFASSPEDFIMQADQAMYK 351

Query: 247 AKKSGRN 253
           AK S  +
Sbjct: 352 AKNSNEH 358


>gi|254450972|ref|ZP_05064409.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Octadecabacter antarcticus 238]
 gi|198265378|gb|EDY89648.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Octadecabacter antarcticus 238]
          Length = 617

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 21/183 (11%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDN 145
           ++L  + N++   +  D L+G+ N +AF + +G          + ++  D+D FK +ND 
Sbjct: 169 QKLHETSNKLQHEATHDGLTGVPNRAAFKTFIGDALRSGDGTPVGLLHIDLDNFKAVNDT 228

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD V+   +D +         + R+GG+EF      +S+     L +DL   +  
Sbjct: 229 HGHSGGDAVLTHTADVIRQNIRDSDLLARVGGDEFVVVCPQTSD---LALLDDLSTRL-- 283

Query: 206 SQINISSGP--------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             ++++S P         I  +I A I++   K    T++ +AD ALY AK++GRNRV  
Sbjct: 284 --LDVTSKPFAWSNRLLKIEASIGAAISQ-SEKTTAETLLVQADFALYEAKRTGRNRVAL 340

Query: 258 FSD 260
           + +
Sbjct: 341 YDE 343


>gi|197286920|ref|YP_002152792.1| signaling protein [Proteus mirabilis HI4320]
 gi|194684407|emb|CAR46095.1| putative signaling protein [Proteus mirabilis HI4320]
          Length = 301

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 88/175 (50%), Gaps = 15/175 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIV--------FFDIDYFKQINDNFGHP 149
           N +   S ID L+G+ N  + I  +    E+L+I           D D FK IND +GH 
Sbjct: 129 NDLLNKSYIDSLTGMANRLSIIEKIEQ--ERLNIATPSSFCLGIIDCDKFKTINDQYGHA 186

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA---AAALGSSEQEAAILANDLRKIIENS 206
           +GD V+  ++ +L+ +    ++ GRLGG+EFA    A L S       +   L + +E  
Sbjct: 187 IGDHVLCEIAQRLLALERQQVYCGRLGGDEFAVLFPAGLRSCSLLLLEIIESLWRGME-K 245

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            I I+   +I  +IS GIAE     + +S ++  AD+ LY  K+ G N+   +S+
Sbjct: 246 PIKINKEKTIVPSISLGIAEYPKDGKTLSELLKSADKQLYAIKEKGGNKYGFYSE 300


>gi|94971157|ref|YP_593205.1| diguanylate cyclase [Candidatus Koribacter versatilis Ellin345]
 gi|94553207|gb|ABF43131.1| diguanylate cyclase [Candidatus Koribacter versatilis Ellin345]
          Length = 369

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 9/164 (5%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL     F       I         ++++  D+D+FK +ND +GH VGD+V+  +S
Sbjct: 198 DFLTGLKTRGYFEQQLELEIKRAERKRTPIAMLMLDLDHFKTLNDTYGHHVGDQVLRDVS 257

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HI 218
             L+          R GGEEF      ++   A  +AN +R+ +E ++    S   +  +
Sbjct: 258 AVLMKDLREVDTAARYGGEEFVIVLPETNTTGAMQVANRIRRGVEQAKFFAGSPRQVERL 317

Query: 219 TISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           TIS GIA      +    +I  AD ALY AK  GRN+VV  +++
Sbjct: 318 TISIGIAIYDQDAQSKRELIEAADAALYQAKGQGRNQVVTHAEL 361


>gi|260683960|ref|YP_003215245.1| putative signaling protein [Clostridium difficile CD196]
 gi|260687620|ref|YP_003218754.1| putative signaling protein [Clostridium difficile R20291]
 gi|260210123|emb|CBA64265.1| putative signaling protein [Clostridium difficile CD196]
 gi|260213637|emb|CBE05462.1| putative signaling protein [Clostridium difficile R20291]
          Length = 631

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 14/164 (8%)

Query: 107 DCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+ L N       L    G+ ++ +  +  DID FK  NDN+GH  GDKVI  ++D +
Sbjct: 466 DGLTKLYNRRYLEQQLDLFNGTRDKNMVAILVDIDCFKSYNDNYGHLAGDKVIVKVTDII 525

Query: 163 VVVF-GTPMFVGRLGGEEF-----AAAALGSSE-QEAAILANDLRKIIENSQI-NISSGP 214
             VF      + R GGEE      +  ++G  E     +    + K++E   I +I S  
Sbjct: 526 RSVFIDITEHIIRYGGEEILILVDSIESIGVEEIDNIELYIKRVFKLLEFEGIEHIYSKI 585

Query: 215 SIHITISAGIA-ERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
             +ITISAG++ +RC  ++ +  +I  AD+ LY +KK+GRN+ +
Sbjct: 586 KNYITISAGVSIKRCRSRKDVEILIEDADKNLYKSKKAGRNQYI 629


>gi|260854984|ref|YP_003228875.1| modulator of Rnase II stability [Escherichia coli O26:H11 str.
           11368]
 gi|257753633|dbj|BAI25135.1| modulator of Rnase II stability [Escherichia coli O26:H11 str.
           11368]
 gi|323153280|gb|EFZ39538.1| protein gmr [Escherichia coli EPECa14]
          Length = 661

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMAS--- 335

Query: 201 KIIENSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 336 RILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 S 259
           +
Sbjct: 396 T 396


>gi|238926650|ref|ZP_04658410.1| possible diguanylate cyclase (GGDEF) [Selenomonas flueggei ATCC
           43531]
 gi|238885596|gb|EEQ49234.1| possible diguanylate cyclase (GGDEF) [Selenomonas flueggei ATCC
           43531]
          Length = 573

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 75/164 (45%), Gaps = 16/164 (9%)

Query: 107 DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G  N     S   ++ E       K S   FDID+FK IND  GH  GD V+  ++
Sbjct: 416 DFLTGCYNRHQLESGFENFAELARERGFKFSFAIFDIDHFKTINDTRGHLAGDHVLKEIA 475

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +           R GG+EF    L           + LR I+E+            +T
Sbjct: 476 GIIHDEIDRRHLFIRYGGDEFVLLGLHYDLDAMVAFCDHLRGILEHRLGG--------VT 527

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +S G++      +P+S +I RAD+ALY +KK GRN V   S+I+
Sbjct: 528 LSFGVSTWHGADDPLSDLIARADRALYRSKKKGRNTVSAESEID 571


>gi|227354841|ref|ZP_03839258.1| signaling protein [Proteus mirabilis ATCC 29906]
 gi|227165159|gb|EEI49990.1| signaling protein [Proteus mirabilis ATCC 29906]
          Length = 301

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 88/175 (50%), Gaps = 15/175 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIV--------FFDIDYFKQINDNFGHP 149
           N +   S ID L+G+ N  + I  +    E+L+I           D D FK IND +GH 
Sbjct: 129 NDLLNKSYIDSLTGMANRLSIIEKIEQ--ERLNIATPSSFCLGIIDCDKFKTINDQYGHA 186

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA---AAALGSSEQEAAILANDLRKIIENS 206
           +GD V+  ++ +L+ +    ++ GRLGG+EFA    A L S       +   L + +E  
Sbjct: 187 IGDHVLCEIAQRLLALERQQVYCGRLGGDEFAVLFPAGLRSCSLLLLEIIESLWRGME-K 245

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            I I+   +I  +IS GIAE     + +S ++  AD+ LY  K+ G N+   +S+
Sbjct: 246 PIKINKEKTIVPSISLGIAEYPKDGKTLSELLKSADKQLYAIKEKGGNKYGFYSE 300


>gi|239624472|ref|ZP_04667503.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520858|gb|EEQ60724.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 652

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 12/173 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY----NEKL--SIVFFDIDYFKQINDNFGHPVGD 152
           R+  +S+ D L+GL N +A++   G      N  L  ++VF D+D  K INDNFGH +GD
Sbjct: 478 RLRNISQHDQLTGLYN-AAYLKKEGQKILDDNRNLVNALVFCDLDNLKYINDNFGHEMGD 536

Query: 153 KVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INI 210
           + +  ++D L  +      V  RL G+EF     G  ++E  +  N +++  E    I +
Sbjct: 537 RYLKAMADMLADMAAPEQCVAVRLSGDEFVLFFYGYGDRETIL--NKVKEGYEQRPFIQL 594

Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             G    I  S G+A  +   E +  +I RAD+A+Y  K   +N +  +   +
Sbjct: 595 PDGTRHRINASVGLAFAQRETERMDDLINRADRAMYRVKHGSKNGIAVYDKTD 647


>gi|168788396|ref|ZP_02813403.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O157:H7 str. EC869]
 gi|261224271|ref|ZP_05938552.1| RNase II stability modulator [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261257473|ref|ZP_05950006.1| RNase II stability modulator [Escherichia coli O157:H7 str.
           FRIK966]
 gi|189371806|gb|EDU90222.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O157:H7 str. EC869]
          Length = 661

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMAS--- 335

Query: 201 KIIENSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 336 RILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 S 259
           +
Sbjct: 396 T 396


>gi|152990926|ref|YP_001356648.1| hypothetical protein NIS_1182 [Nitratiruptor sp. SB155-2]
 gi|151422787|dbj|BAF70291.1| hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 458

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 8/162 (4%)

Query: 102 QLSRIDCLSGLLNH---SAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q +  D L+ L N      FI S       YN  LS+V  D+D+FK+IND++GH VGD V
Sbjct: 293 QKAITDGLTKLYNRYYLDKFIESEFEKAKRYNYPLSVVMIDLDFFKRINDSYGHEVGDMV 352

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   ++ L         V R GG+E       +   +A  +   +R ++           
Sbjct: 353 LKAFAEFLKKNVRKSDVVFRYGGDELLIVMPFTDLHQARDVMERIRNLLHQKGTLQFGDI 412

Query: 215 SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
            I  T SAGIA      +    +I +AD+ALY AKK GR+R+
Sbjct: 413 KITYTFSAGIATIDENIKDAKELIKKADEALYKAKKLGRDRI 454


>gi|134291280|ref|YP_001115049.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia vietnamiensis
           G4]
 gi|134134469|gb|ABO58794.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia vietnamiensis
           G4]
          Length = 604

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 98/193 (50%), Gaps = 16/193 (8%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS--------LGSYNEKLS 130
           +L  G+++ +  ++   +   + +L+ +D L+ L N   F++           + +   +
Sbjct: 417 TLWHGFVTDTTERKRIEA--ELHELATVDHLTQLANRRHFMTQGEAELVRIRRAESRIAA 474

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D FK +ND +GH +GD+ +   +  L         VGR+GGEEFAA    S  +
Sbjct: 475 VLMLDLDNFKALNDRWGHALGDRALRHFAGLLRSEARAGDIVGRIGGEEFAAVLPDSGTE 534

Query: 191 EAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEP--ISTIIYRADQALYVA 247
           EA  +A  LR     ++  +  G   + +T+S G+ +R +     +   + R D+ALY+A
Sbjct: 535 EA--IAFGLRVQRRAAETPLVLGEQHVALTVSIGV-DRMYATDVGVDQALTRCDKALYLA 591

Query: 248 KKSGRNRVVCFSD 260
           K+ GRNRV  + +
Sbjct: 592 KERGRNRVELYRE 604


>gi|330504393|ref|YP_004381262.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328918679|gb|AEB59510.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 344

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 93/203 (45%), Gaps = 21/203 (10%)

Query: 78  ISLLLGYISGSILKELFISYNRISQ-----LSRIDCLSGLLNHSAF-------ISSLGSY 125
           +S L+  +  S+L  +F    R  +     L+  D L+G  N  A        ++S   +
Sbjct: 147 VSFLVTSMMASVLSFIFAFRTRTQRDQLQLLAIHDPLTGARNRRAMNEELKIAMASHRRH 206

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           ++   ++  D+D+FKQIND FGH +GD+V+    + +         + R GGEEF    L
Sbjct: 207 SDSYGLLVMDLDHFKQINDRFGHHIGDQVLVAFVELIKRYCRKEDRLFRFGGEEF-LLLL 265

Query: 186 GSSEQEA--AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
            S+E E   A   N L K+    Q      P   +T+S G A     E   + + RAD+ 
Sbjct: 266 PSTEAEGLRAAAQNLLGKVANELQ-----SPGGAVTVSIGGAILHGGEHWESWLQRADEC 320

Query: 244 LYVAKKSGRNRVVCFSDIENNTC 266
           LY AK  GRNR V  +D    T 
Sbjct: 321 LYRAKSEGRNRAVI-ADAPETTA 342


>gi|307726948|ref|YP_003910161.1| diguanylate cyclase [Burkholderia sp. CCGE1003]
 gi|307587473|gb|ADN60870.1| diguanylate cyclase [Burkholderia sp. CCGE1003]
          Length = 397

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 9/165 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +L+  D L+G L   AFI+       +  +   +LS+   DID FK IND  GH  
Sbjct: 215 QQVEKLATFDDLTGALVRRAFIARGEALSRAARATQAQLSVAIIDIDDFKTINDRHGHAA 274

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+A    Q+          GRLGGEEFA     +S  +AA    D+   +       
Sbjct: 275 GDRVLADFGAQVRRHMHAGDVFGRLGGEEFAILFPHTSMADAAQRIGDVLIAVRCPPDQS 334

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              P+     SAG+ +    E +   +  AD  LY AK++G+ R+
Sbjct: 335 HDKPA--YAFSAGLNDCLRTESLGDALAGADAMLYRAKRAGKCRI 377


>gi|283850245|ref|ZP_06367534.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
 gi|283574271|gb|EFC22242.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
          Length = 415

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 81/163 (49%), Gaps = 11/163 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEK----LSIVFFDIDYFKQINDNFGHP 149
           +  +S+    D L+G+ N ++      SL S  E+     +++F D+D FK +ND FGH 
Sbjct: 251 HEELSRQRDSDELTGIPNRASLRRNAPSLLSLAERRGSPAALLFCDLDRFKAVNDLFGHE 310

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQ 207
            GD V+  ++  +         + RLGG+EF      +   EAA++A  LR  +      
Sbjct: 311 KGDAVLCDVARAMAGRIRAYDMLARLGGDEFVVLMPDAGNHEAAVMAKRLRACVAQVARD 370

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
             +S  P + ++I  G+A     + I  +I RAD+A+Y  K++
Sbjct: 371 RELSGAPGLSVSI--GVAMHVPGQSIDDLIRRADEAMYADKRA 411


>gi|209965575|ref|YP_002298490.1| sensory box-containing diguanylate cyclase, putative
           [Rhodospirillum centenum SW]
 gi|209959041|gb|ACI99677.1| sensory box-containing diguanylate cyclase, putative
           [Rhodospirillum centenum SW]
          Length = 570

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 77/163 (47%), Gaps = 7/163 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGD 152
            R+  LS  D L+GL N   F+  L    E+      ++++FD+D FK +ND  GH  GD
Sbjct: 381 ERLKTLSERDGLTGLYNRRTFMELLEQRLERHRGGSSALLYFDLDNFKAVNDLLGHTAGD 440

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  +   LV +        RLGG+EF        E +A  +A+ L +        +S+
Sbjct: 441 GVLQAVGTLLVRLARPGDLTARLGGDEFVLWIERVDEAQALRVADRLLREAAEFLRPLSA 500

Query: 213 GPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
            P   + +S G+A       EP   ++ R D A+Y AK+ G+ 
Sbjct: 501 APDRPLGVSIGVALYAGGGGEPAQGLLDRGDHAMYAAKRQGKG 543


>gi|221067174|ref|ZP_03543279.1| diguanylate cyclase [Comamonas testosteroni KF-1]
 gi|220712197|gb|EED67565.1| diguanylate cyclase [Comamonas testosteroni KF-1]
          Length = 409

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 7/165 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +  ++  D L+ LLN    +  LG++        + ++  DID+FK+IND++GH  GD
Sbjct: 217 DELGSMAAQDPLTRLLNRRGLVQGLGAHFAAAKTVPVHLLIVDIDHFKRINDSYGHQFGD 276

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NIS 211
            V+  +++ +           RLGGEEF     G    EA  LA  +R  I    I  IS
Sbjct: 277 MVLCRVAEVIRQSTRKSDLKCRLGGEEFVVLCPGLRGDEALQLAERIRAAIAEITIPGIS 336

Query: 212 SGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255
               +  T + G++            + +AD ALY  K +GRNRV
Sbjct: 337 LHGCVTCTATIGVSNPFIASHAFDLALQQADAALYRGKHAGRNRV 381


>gi|39996049|ref|NP_952000.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
 gi|39982814|gb|AAR34273.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
 gi|298505072|gb|ADI83795.1| sensor diguanylate cyclase/phosphodiesterase, HAMP and PAS
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 842

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 94/185 (50%), Gaps = 11/185 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           ++E   S   I +L+  D L+GL N + F       ++        ++++F D+D FK I
Sbjct: 385 MRERKRSEEEIRRLAYFDPLTGLPNRALFQDRVSHALAVARREEGAVALLFLDLDRFKDI 444

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRK 201
           ND  GH +GD ++  ++D+L         + RLG +EF     G+  E+  +I+A  L  
Sbjct: 445 NDTLGHAMGDLLLTSVADRLKAHVRVSDTLARLGDDEFVVILTGARDERGVSIVAQSLLD 504

Query: 202 IIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++  S  ++  G  + I+ S GIA      E  + ++ RAD AL+ AK++GRN    +SD
Sbjct: 505 LLTPS-FDL-EGKEVFISTSIGIALFPSDGEDGNVLLSRADMALHAAKEAGRNVYRFYSD 562

Query: 261 IENNT 265
             N +
Sbjct: 563 DMNRS 567


>gi|58579734|ref|YP_198750.1| hypothetical protein XOO0111 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84621724|ref|YP_449096.1| hypothetical protein XOO_0067 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|58424328|gb|AAW73365.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84365664|dbj|BAE66822.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 542

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 8/164 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           ++ L R D L+G LN   F               + L +   D+D F+++N+  GH  GD
Sbjct: 377 VAGLVREDQLTGALNRRGFEELFQREAVRTQRSGQPLCVAMLDLDDFRRLNETHGHAGGD 436

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +    D    V  T   + R GGEEF      S+  EA+     L++ +    + +  
Sbjct: 437 AALRHTVDVAKAVLRTTDAIARFGGEEFVLLLPDSTIFEASAAVIRLQRALSQRSL-LHD 495

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              + I+ SAG+A R   E    +I RAD+A+Y AK +G+NRV+
Sbjct: 496 DVRVFISFSAGVALRGTDETQDDVIRRADRAMYDAKSAGKNRVI 539


>gi|323702234|ref|ZP_08113900.1| diguanylate cyclase [Desulfotomaculum nigrificans DSM 574]
 gi|323532724|gb|EGB22597.1| diguanylate cyclase [Desulfotomaculum nigrificans DSM 574]
          Length = 196

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 91/203 (44%), Gaps = 25/203 (12%)

Query: 65  LVENLSLV-IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----- 118
           +V+ L L   ISI    L G      L+ L I++  + +    D L+G+ N  A+     
Sbjct: 1   MVKRLRLAPWISIPAYQLFGT---DKLERLMITWPSVGEHK--DYLTGIPNRQAYEQAIE 55

Query: 119 --ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
             +      N    ++  D+D FK +ND +GH  GD V+   SD+ V V     F  R G
Sbjct: 56  LAVKESARQNAGFGLIVLDLDKFKSVNDQYGHLTGDAVLKEFSDRAVKVLRENDFFARYG 115

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--- 233
           GEEF    L     +   +   +R+ +     N++   +I +T S G    C   PI   
Sbjct: 116 GEEF--VILTPCHDKTFEIGERVRQAVCGVPFNVNR-LNIEVTCSFG----CAIYPIGGF 168

Query: 234 --STIIYRADQALYVAKKSGRNR 254
               +  +AD ALY AKK+GRN+
Sbjct: 169 TAKEVFQKADDALYQAKKNGRNQ 191


>gi|320183844|gb|EFW58676.1| hypothetical protein SGF_03960 [Shigella flexneri CDC 796-83]
          Length = 652

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 210 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 269

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 270 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMAS--- 326

Query: 201 KIIENSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 327 RILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 386

Query: 259 S 259
           +
Sbjct: 387 T 387


>gi|312959345|ref|ZP_07773862.1| two-component system, PleD related family, response regulator
           [Pseudomonas fluorescens WH6]
 gi|311286062|gb|EFQ64626.1| two-component system, PleD related family, response regulator
           [Pseudomonas fluorescens WH6]
          Length = 333

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 11/168 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L   D L+GL N   F   L            +LS++  D+D+FK  ND+FGH  GD
Sbjct: 164 LQRLMNSDGLTGLSNRRHFDEYLELEWRRALRDQTQLSLLMIDVDFFKTYNDSFGHVEGD 223

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-- 209
           + +  ++D +      P     R GGEEFA     +S   A ++A  LR  +   +I   
Sbjct: 224 EALRKVADTIREASSRPSDLPARYGGEEFALVLPNTSPGGARLVAEKLRMAVAALKIPHT 283

Query: 210 -ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             + G S+ I+I               +I  AD+ LY AK +GRN+VV
Sbjct: 284 APTEGASLTISIGLSTMTPVQGSDCRNLIVAADKGLYTAKHNGRNQVV 331


>gi|296273431|ref|YP_003656062.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
 gi|296097605|gb|ADG93555.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
          Length = 280

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 14/179 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFK 140
             ++++EL      +  +   D L+ L N     + L  + ++     L  VF D D FK
Sbjct: 104 KDNLIEELLREKEFLKDMMNKDALTSLYNRRKMEADLEIFTKQKHSSLLCAVFIDADRFK 163

Query: 141 QINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQ---EAAILA 196
            INDNFGH  GD+V+ +L++++    +       R GGEEF        ++   +  IL 
Sbjct: 164 GINDNFGHDTGDRVLKYLANKIQSHAYSLNGEAYRYGGEEFIILCFEKKDELIKKLNILR 223

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            D++     SQ+       I IT+S G++       I   I  AD+ +Y AK +GR+R+
Sbjct: 224 EDIK-----SQMIFHPLKEISITVSMGVSFYSKANSIDEFIKMADEKVYQAKANGRDRL 277


>gi|325981579|ref|YP_004293981.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas sp. AL212]
 gi|325531098|gb|ADZ25819.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas sp. AL212]
          Length = 1029

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 9/171 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N   F   L S          K ++++FD+D FK IND +GH  GD V+
Sbjct: 610 LAERDPLTGLYNRHRFQEQLESLIANCLRSRGKFALLYFDLDDFKYINDTYGHSAGDTVL 669

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              + ++  +        RLGG+EFA  +    +++  +L + +   I +  +    G +
Sbjct: 670 VRAAGEISSIIRQIEIFARLGGDEFAILSSIQPDEDINVLPSRIITAISSIPLRF-HGRN 728

Query: 216 IHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           I +T S G+A    H E    +I  AD A+Y AK  G+N    +    +++
Sbjct: 729 IRLTSSLGVAIFPEHGETTEDLIAHADTAMYQAKTQGKNTWAIYDSTRDDS 779


>gi|289208023|ref|YP_003460089.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
 gi|288943654|gb|ADC71353.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
          Length = 332

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 78/161 (48%), Gaps = 11/161 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+GL N      +L    E+       L+ +  D+D+FK IND+ GH  GD
Sbjct: 171 LEHLATTDPLTGLHNRMKGNHALEDELERARRQSSPLATIMVDLDHFKAINDHQGHAQGD 230

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  +   L           R GGEEF      ++  +A+ LA  LR+ IE  Q +  +
Sbjct: 231 HVLRAVGQLLHERLRETDTAARWGGEEFLILCPHTTAGQASSLAETLRQSIE--QHDFGT 288

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            P   +T S G+A     +    +I RAD+ALY AK++ RN
Sbjct: 289 DPP--LTASFGVAALEPGDTAEGLIARADRALYAAKRASRN 327


>gi|187732236|ref|YP_001880121.1| RNase II stability modulator [Shigella boydii CDC 3083-94]
 gi|187429228|gb|ACD08502.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Shigella boydii CDC 3083-94]
          Length = 661

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMAS--- 335

Query: 201 KIIENSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 336 RILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 S 259
           +
Sbjct: 396 T 396


>gi|166714004|ref|ZP_02245211.1| hypothetical protein Xoryp_21835 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 542

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 12/166 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           ++ L R D L+G LN   F               + L +   D+D F+++N+  GH  GD
Sbjct: 377 VAGLVREDQLTGALNRRGFEELFQREAVRTQRSGQPLCVAMLDLDDFRRLNETHGHAGGD 436

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS--EQEAAILANDLRKIIENSQINI 210
             +    D    V  T   + R GGEEF      S+  E  AA++   L++ +    + +
Sbjct: 437 AALRHTVDVAKAVLRTTDAIARFGGEEFVLLLPDSTIFEASAAVIR--LQRALSQRSL-L 493

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                + I+ SAG+A R   E    +I RAD+A+Y AK +G+NRV+
Sbjct: 494 HDDVRVFISFSAGVALRGTDETQDDVIRRADRAMYDAKSAGKNRVI 539


>gi|27377505|ref|NP_769034.1| hypothetical protein bll2394 [Bradyrhizobium japonicum USDA 110]
 gi|27350649|dbj|BAC47659.1| bll2394 [Bradyrhizobium japonicum USDA 110]
          Length = 653

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 18/243 (7%)

Query: 34  FFSIFIATVIFIANIFL-FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE 92
           F +I IA + F A +FL   I L     + Y+L+    LV +  T+ L   +++      
Sbjct: 155 FATIPIAAIAFTAPLFLGIAICLGRSNDVAYLLIA--ILVAVYGTVLLRAVFVNSFSFAR 212

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
             I      +  R D L+ L N  AF  +L +         E+ +++  D+D FK++ND 
Sbjct: 213 RVIRQVEAERTVRQDPLTHLPNRFAFNETLDAALKRLALSGEEFAVLLLDLDRFKEVNDK 272

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKII 203
           FGHP GD+ +  ++ +L         V R+GG+EFA   A L   E    I    +    
Sbjct: 273 FGHPAGDEFLVQVASRLQRCTRAAEHVARIGGDEFALVMANLARPEDALEIAERFVASFA 332

Query: 204 ENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E   I    G  I    S GI  A R     +  ++  AD ALY AKK+G   V  F D 
Sbjct: 333 EPFPIE---GRQIVGATSVGIVLAPRDGNTALD-VMKNADAALYRAKKAGPGTVCFFEDS 388

Query: 262 ENN 264
           ++ 
Sbjct: 389 DDR 391


>gi|16129246|ref|NP_415801.1| cyclic-di-GMP phosphodiesterase; csgD regulator; modulator of Rnase
           II stability [Escherichia coli str. K-12 substr. MG1655]
 gi|89108131|ref|AP_001911.1| modulator of Rnase II stability [Escherichia coli str. K-12 substr.
           W3110]
 gi|157155383|ref|YP_001462586.1| RNase II stability modulator [Escherichia coli E24377A]
 gi|170080964|ref|YP_001730284.1| modulator of RNase II stability [Escherichia coli str. K-12 substr.
           DH10B]
 gi|191165004|ref|ZP_03026848.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli B7A]
 gi|193062659|ref|ZP_03043753.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli E22]
 gi|194425923|ref|ZP_03058479.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli B171]
 gi|209918528|ref|YP_002292612.1| RNase II stability modulator [Escherichia coli SE11]
 gi|238900521|ref|YP_002926317.1| modulator of Rnase II stability [Escherichia coli BW2952]
 gi|256023003|ref|ZP_05436868.1| RNase II stability modulator [Escherichia sp. 4_1_40B]
 gi|260843634|ref|YP_003221412.1| modulator of Rnase II stability [Escherichia coli O103:H2 str.
           12009]
 gi|300822548|ref|ZP_07102687.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
 gi|300904935|ref|ZP_07122753.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|300948364|ref|ZP_07162470.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1]
 gi|300954535|ref|ZP_07166981.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1]
 gi|301022760|ref|ZP_07186604.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
 gi|301304370|ref|ZP_07210483.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|301647217|ref|ZP_07247036.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|307309959|ref|ZP_07589609.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Escherichia coli W]
 gi|309793239|ref|ZP_07687666.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
 gi|331667674|ref|ZP_08368538.1| protein gmr [Escherichia coli TA271]
 gi|2495597|sp|P77334|GMR_ECOLI RecName: Full=Cyclic di-GMP phosphodiesterase Gmr
 gi|1742099|dbj|BAA14839.1| modulator of Rnase II stability [Escherichia coli str. K12 substr.
           W3110]
 gi|1787541|gb|AAC74367.1| cyclic-di-GMP phosphodiesterase; csgD regulator; modulator of Rnase
           II stability [Escherichia coli str. K-12 substr. MG1655]
 gi|157077413|gb|ABV17121.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli E24377A]
 gi|169888799|gb|ACB02506.1| modulator of Rnase II stability [Escherichia coli str. K-12 substr.
           DH10B]
 gi|190904776|gb|EDV64481.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli B7A]
 gi|192931781|gb|EDV84381.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli E22]
 gi|194415978|gb|EDX32244.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli B171]
 gi|209911787|dbj|BAG76861.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|238861791|gb|ACR63789.1| modulator of Rnase II stability [Escherichia coli BW2952]
 gi|257758781|dbj|BAI30278.1| modulator of Rnase II stability [Escherichia coli O103:H2 str.
           12009]
 gi|260449582|gb|ACX40004.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Escherichia coli DH1]
 gi|299881109|gb|EFI89320.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
 gi|300318445|gb|EFJ68229.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1]
 gi|300403084|gb|EFJ86622.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|300452125|gb|EFK15745.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1]
 gi|300524964|gb|EFK46033.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
 gi|300840357|gb|EFK68117.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|301074579|gb|EFK89385.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|306909677|gb|EFN40171.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Escherichia coli W]
 gi|308122826|gb|EFO60088.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
 gi|309701585|emb|CBJ00892.1| putative signal transduction protein [Escherichia coli ETEC H10407]
 gi|315060539|gb|ADT74866.1| modulator of Rnase II stability [Escherichia coli W]
 gi|315254326|gb|EFU34294.1| diguanylate cyclase domain protein [Escherichia coli MS 85-1]
 gi|323378899|gb|ADX51167.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Escherichia coli KO11]
 gi|323937610|gb|EGB33878.1| AL domain-containing protein [Escherichia coli E1520]
 gi|323942403|gb|EGB38573.1| EAL domain-containing protein [Escherichia coli E482]
 gi|323947431|gb|EGB43435.1| AL domain-containing protein [Escherichia coli H120]
 gi|324018897|gb|EGB88116.1| diguanylate cyclase domain protein [Escherichia coli MS 117-3]
 gi|331065259|gb|EGI37154.1| protein gmr [Escherichia coli TA271]
          Length = 661

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMAS--- 335

Query: 201 KIIENSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 336 RILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 S 259
           +
Sbjct: 396 T 396


>gi|332342881|gb|AEE56215.1| RNase II stability modulator protein [Escherichia coli UMNK88]
          Length = 661

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMAS--- 335

Query: 201 KIIENSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 336 RILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 S 259
           +
Sbjct: 396 T 396


>gi|331677068|ref|ZP_08377764.1| protein gmr [Escherichia coli H591]
 gi|331075757|gb|EGI47055.1| protein gmr [Escherichia coli H591]
          Length = 661

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMAS--- 335

Query: 201 KIIENSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 336 RILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 S 259
           +
Sbjct: 396 T 396


>gi|300864704|ref|ZP_07109560.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300337310|emb|CBN54708.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 870

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 13/163 (7%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F       +++     E L++VF D+D FK IND  GH VGD+++  ++
Sbjct: 439 DQLTGLANRLLFNERLSLALANANQRGEMLAVVFLDLDGFKHINDTLGHAVGDQLLQCVA 498

Query: 160 DQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            +L+    T   + R GG+EF    + + S+E    I    L  +    Q+       ++
Sbjct: 499 HRLITSLRTGDIIARWGGDEFTFLFSHIKSAEDTTKICQLILHSLNTPFQL---EDRELY 555

Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I  S GIA   +  E   T++  AD A+Y AK+ GRN    +S
Sbjct: 556 IKASLGIALAPYDGEDADTLLKNADAAMYRAKQQGRNNYQLYS 598


>gi|218677793|ref|ZP_03525690.1| diguanylate cyclase [Rhizobium etli CIAT 894]
          Length = 355

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 8/136 (5%)

Query: 104 SRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           ++ D L+GL N        SA ++     +  +S+V FD+D+FK+IND  GH  GD V+ 
Sbjct: 209 AQTDLLTGLYNRRGFEVAASALLTQAEHGSRWISVVLFDLDHFKKINDVNGHDAGDAVLR 268

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++      F +   + R GGEEF A    S+  +AA +A  +R  IE ++I +SSG  +
Sbjct: 269 QVAGVARENFRSFDLLVRHGGEEFLALLPDSTPDDAASVAERVRIAIEAAEIPLSSGEVL 328

Query: 217 HITISAGIAERCHKEP 232
            +T S G A R + EP
Sbjct: 329 KVTASFGCAGRAN-EP 343


>gi|212638315|ref|YP_002314835.1| signal transduction diguanylate cyclase (GAF-GAF-GGDEF domains)
           [Anoxybacillus flavithermus WK1]
 gi|212559795|gb|ACJ32850.1| Signal transduction diguanylate cyclase (GAF-GAF-GGDEF domains)
           [Anoxybacillus flavithermus WK1]
          Length = 618

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 92/181 (50%), Gaps = 19/181 (10%)

Query: 82  LGYISGSILKEL--FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYF 139
           L + + ++ +EL   +  +R++ L     L   +  S     LG++      +  DID F
Sbjct: 449 LAFTNAALREELERMVITDRLTNLYARHYLDERIQRSMEEDGLGTF------ILIDIDNF 502

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND +GH VGD++I  +++ +           R GGEE A      S      +AN L
Sbjct: 503 KKVNDTYGHQVGDEIIIQVANIIKANIRQNDIGARWGGEELAIYLPKVSIHAGVSIANRL 562

Query: 200 -RKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +K+ E     +++ P   +TIS G++  ++   + +  +  RAD+ALY AK++G+NRVV
Sbjct: 563 VQKVRE-----LTNPP---VTISCGVSYWKKNRADSVKELFNRADEALYTAKRTGKNRVV 614

Query: 257 C 257
            
Sbjct: 615 V 615


>gi|193067090|ref|ZP_03048059.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli E110019]
 gi|192959680|gb|EDV90114.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli E110019]
          Length = 661

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMAS--- 335

Query: 201 KIIENSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 336 RILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 S 259
           +
Sbjct: 396 T 396


>gi|167835918|ref|ZP_02462801.1| EAL/GGDEF domain protein [Burkholderia thailandensis MSMB43]
          Length = 772

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 100/204 (49%), Gaps = 16/204 (7%)

Query: 62  EYILVENLSLVIIS-ITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +Y    N+ L++ S IT+++L   G  +G I K L      ++QL+  D L+GL N  A 
Sbjct: 278 DYHHTRNVYLLMTSFITLAMLAFFGVATGLIGK-LLGREREMTQLAEFDLLTGLANRYAT 336

Query: 119 ISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           + SL       S   +L+I+F D+D FK +ND  GH  GD V+   + +L         +
Sbjct: 337 LRSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVTNEGAL 396

Query: 173 GRLGGEEFAAAALGSS-EQEAAILANDL-RKIIENSQINISSGPSIHITISAGIA-ERCH 229
            R+GG+EF     G + E+ A  LA  + R   E   +    G S  +  S GIA     
Sbjct: 397 ARIGGDEFVVVVKGENVERRAEHLAEAIVRMFAEPFDVR---GSSFVLHASIGIALHSVG 453

Query: 230 KEPISTIIYRADQALYVAKKSGRN 253
            E    ++ +AD A+Y AK +G+N
Sbjct: 454 NESEIDLLKKADLAMYSAKDAGKN 477


>gi|189425976|ref|YP_001953153.1| diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ]
 gi|189422235|gb|ACD96633.1| diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ]
          Length = 461

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 13/171 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
           +R+ Q+++ D L+GL N   F+  L           ++ +++F D+D FK+IND++GH  
Sbjct: 280 DRLEQMAQFDMLTGLPNRRMFLDRLSQTVAIAQRTEQRFALLFVDLDGFKRINDSYGHEA 339

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQI 208
           GD+V+  ++ +L         VGR+GG+EF       +  E A    D  KI++  +  I
Sbjct: 340 GDRVLKTVAARLAACIRMSDTVGRMGGDEFTIILSTLAHYEDAGQVAD--KILDALSRPI 397

Query: 209 NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +  G    +  S GI+      +    ++  AD A+Y  K++G+N   CF
Sbjct: 398 TLPDGQQDTVGSSIGISVFPEDAQDGDGLLATADDAMYKVKRNGKN-SYCF 447


>gi|157368890|ref|YP_001476879.1| diguanylate cyclase [Serratia proteamaculans 568]
 gi|157320654|gb|ABV39751.1| diguanylate cyclase [Serratia proteamaculans 568]
          Length = 357

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 119/251 (47%), Gaps = 22/251 (8%)

Query: 32  SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS----------LVIISITISLL 81
           S+F   FI+ +    N   F +   P   L  +L++ +           L II+ +I  L
Sbjct: 105 SLFSMFFISAIALTDNFIAFCLHAVP-SALVILLLDGMHNTMRIVFTTVLPIIAFSIHHL 163

Query: 82  L----GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVF 133
           +     + + +++  L+   +R S LS ID L+GL N     + +       S    ++ 
Sbjct: 164 MLKRSEHFTQTLVANLYNERDRFSNLSMIDPLTGLYNRRGLENKINMLPAAASDCHFVLL 223

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK  NDN+GH +GD+ +  ++  +     +   V R GGEEF       +E  A 
Sbjct: 224 LDIDHFKAYNDNYGHTMGDQALVQVAIAIRDSVRSRDIVVRYGGEEFLVLLTNVNEDYAT 283

Query: 194 ILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
            +A  +R+ ++  +I    +   +  +T+SAGI+    K  +++ I  AD ALY AK +G
Sbjct: 284 QVAERVRQRVQELKIPHRFNQFETTTVTLSAGISA-LDKLDVASAIRAADAALYQAKNNG 342

Query: 252 RNRVVCFSDIE 262
           RN +    +++
Sbjct: 343 RNNIQLAQNVQ 353


>gi|328949559|ref|YP_004366894.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Marinithermus hydrothermalis DSM 14884]
 gi|328449883|gb|AEB10784.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Marinithermus hydrothermalis DSM 14884]
          Length = 1053

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 10/162 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ QL+  D L+ L N           I+    Y E L++++ D+D FKQ+ND+ GH  G
Sbjct: 634 QVEQLAYYDPLTQLANRRFLQERAQQAITHARRYGESLALLYLDLDRFKQVNDSLGHEAG 693

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++A ++ +L         + RLGG+EF      + ++EA+  A  L K +   Q    
Sbjct: 694 DELLAQVAARLRRFVRESDTLARLGGDEFVLLLTEAGQEEASRSAERLVKALR--QPFSV 751

Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252
            G ++ + +S GIA          T++ RAD A+Y AK   R
Sbjct: 752 RGHTVSVEVSIGIALYPQDGSTFETLMRRADAAMYRAKNEHR 793


>gi|296390801|ref|ZP_06880276.1| hypothetical protein PaerPAb_21718 [Pseudomonas aeruginosa PAb1]
          Length = 651

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 13/154 (8%)

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N  AF   LG       S   +L++++ D+D FK++ND FGH VGD ++  ++
Sbjct: 490 DPLTGLGNRKAFDEQLGQALLRAGSGGSELALLYLDLDRFKEVNDRFGHDVGDALLRTVA 549

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQINISSGPSIH- 217
           +++      P    RLGG+EFA     S E     LA   L  +++   +N   G  I  
Sbjct: 550 ERVRSTLRQPDKAYRLGGDEFAVLLEDSQENNPQRLAERLLAALVQPIALN---GERIDF 606

Query: 218 ITISAGIA-ERCHKEPISTIIYRADQALYVAKKS 250
           +T S GIA    H      ++  AD A+Y AK+ 
Sbjct: 607 VTPSIGIALYPRHAGDAEGLVRAADSAMYEAKRQ 640


>gi|296272260|ref|YP_003654891.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
 gi|296096435|gb|ADG92385.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
          Length = 618

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 80/169 (47%), Gaps = 23/169 (13%)

Query: 106 IDCLSGLLNHS---AFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ID L+GL N      FI         LGS     +++F DIDYFK +ND +GH  GD ++
Sbjct: 446 IDGLTGLYNRKYLDDFIEKRMPQELLLGS---SYAVMFLDIDYFKMVNDTYGHDAGDAIL 502

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ----INIS 211
             LS  +        F+ R GGEEF       +E+ A  LA  +     NS+    +   
Sbjct: 503 QKLSKTMKAEISDKDFIIRFGGEEFLIIMENPTEESAKDLATRI-----NSEFAKLVYTF 557

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  S   T+S G A      + +   I  AD  LY AK++GRN+V+ F+
Sbjct: 558 NNESFSKTVSIGYAFLPSDTDQMWKCIKFADLCLYKAKETGRNKVIRFT 606


>gi|296114446|ref|ZP_06833099.1| diguanylate cyclase/phosphodiesterase [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295978802|gb|EFG85527.1| diguanylate cyclase/phosphodiesterase [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 575

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 12/189 (6%)

Query: 81  LLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS--------I 131
           ++G+++    + EL  +  R+   +  D ++GLLN   F +SL +  E+          +
Sbjct: 118 IIGFVAARFEITELMNTKERLKIQAATDTMTGLLNRGGFNASLIATLEQCKQCDTDERVL 177

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQ 190
           V FD+D FKQIND  GH  GD V+  +  ++V + G+     RL G+EFA     S  E 
Sbjct: 178 VMFDLDGFKQINDIHGHHAGDTVLRTIGRRIVELVGSEEATSRLRGDEFAIILHKSLREH 237

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
               L   L+ ++E   I++ S   + ++ S G       + +  +   AD ALY AK++
Sbjct: 238 SLETLLTRLQALLEEP-IDLESAI-VRVSGSIGATPLTATDTLEDVQKNADVALYAAKQA 295

Query: 251 GRNRVVCFS 259
           G  +   FS
Sbjct: 296 GGKQARMFS 304


>gi|225390556|ref|ZP_03760280.1| hypothetical protein CLOSTASPAR_04311 [Clostridium asparagiforme
           DSM 15981]
 gi|225043398|gb|EEG53644.1| hypothetical protein CLOSTASPAR_04311 [Clostridium asparagiforme
           DSM 15981]
          Length = 439

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 11/160 (6%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ LLN   F   L             ++++  DIDYFK+ ND  GH  GD  +  ++
Sbjct: 224 DSLTRLLNRCGFAQKLEELLPITIRMEIPIAVIMVDIDYFKRFNDANGHCEGDLCLQQIA 283

Query: 160 DQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIH 217
             L   +  +   + R GGEEF     G     A   A  LR+++E+ +I       S H
Sbjct: 284 SALAGGIHRSSDLICRYGGEEFQILLYGIDHANAVRAAERLRRLVESLEIPAPDHRVSPH 343

Query: 218 ITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRV 255
           +TIS G+A     H+     ++  +DQ LY +K++G+N+V
Sbjct: 344 MTISLGLASGVLRHERDYDALVRLSDQQLYRSKETGKNKV 383


>gi|197335124|ref|YP_002155249.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
 gi|197316614|gb|ACH66061.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
          Length = 675

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 17/173 (9%)

Query: 104 SRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           S++D L+G+ N   F   I  +   +    +++ DID FK IND+ GH +GD+V+  +S+
Sbjct: 250 SQVDLLTGIYNRHGFTHVIEKMIKEDIPFFMLYLDIDNFKNINDSLGHHIGDRVLKEISN 309

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------ 214
           +L  +      VG LGG+EF    L    +   +L     KI     IN+ + P      
Sbjct: 310 RLQKLLPKHAVVGHLGGDEF--GILFPKPEHNQVLEQLSEKI-----INLINQPFDLVHF 362

Query: 215 SIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           S  +  S G +          +++  AD A+Y AK  GRNR++ F D  N   
Sbjct: 363 SKRLACSIGSVQYPADGSDARSLLQNADTAMYEAKDRGRNRLIKFHDQMNKEA 415


>gi|149909836|ref|ZP_01898487.1| hypothetical protein PE36_08836 [Moritella sp. PE36]
 gi|149807168|gb|EDM67124.1| hypothetical protein PE36_08836 [Moritella sp. PE36]
          Length = 878

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/158 (32%), Positives = 81/158 (51%), Gaps = 5/158 (3%)

Query: 107 DCLSGLLNHSAFISSLGSY--NEKLSIVFF-DIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GLLN +A  + L  Y  N++  +V F D+D FK+IND +GH VGD  +   +D+L 
Sbjct: 446 DALTGLLNRTACQNFLEEYLQNKQWGVVLFIDLDGFKKINDTYGHGVGDLFLQKTADRLK 505

Query: 164 VVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
            +      + R+GG+EF     G  S+     LA  L++ +    +   S  ++H+T S 
Sbjct: 506 QMLRKRDRIARIGGDEFVIYFEGEMSQHTIKQLAERLQREVTRPVLLDGSSIALHVTASI 565

Query: 223 GIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           G      H +    I+  AD A+Y  KK+G+     FS
Sbjct: 566 GFTFLGPHYQHARDILRDADLAMYEVKKNGKANYQVFS 603


>gi|170743248|ref|YP_001771903.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46]
 gi|168197522|gb|ACA19469.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46]
          Length = 884

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 13/190 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFFDID 137
           LG    ++L  L  S  R+ QL+  D ++GL N         + LG    + + +F D+D
Sbjct: 415 LGQAFETMLANLRESLGRVRQLAFFDPVTGLANREKMRLDGTAILGQGRGRTAFLFLDLD 474

Query: 138 YFKQINDNFGHPVGD--------KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            FK +ND FGH  GD        +++AFL ++        + +GR+GG+EF     G+  
Sbjct: 475 RFKSVNDTFGHRAGDALLSQLARRLVAFLEERRRAGAWESVLLGRIGGDEFLIVVSGALT 534

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           ++      +    + +    + S   + +  S GIA    +     ++ RAD A+Y AK+
Sbjct: 535 RDGLRACGEALVAVVSESYEVGSAHMV-VGASIGIALAEGEAGYDELLVRADIAMYEAKR 593

Query: 250 SGRNRVVCFS 259
            GR     F+
Sbjct: 594 QGRGTCTFFT 603


>gi|118581773|ref|YP_903023.1| diguanylate cyclase [Pelobacter propionicus DSM 2379]
 gi|118504483|gb|ABL00966.1| diguanylate cyclase [Pelobacter propionicus DSM 2379]
          Length = 505

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 83/166 (50%), Gaps = 13/166 (7%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N   F  +L         YN + S+V FD+D FK +ND  GH VGD ++  +S
Sbjct: 340 DGLTGVYNRRFFQEALDKELMRAQRYNRQFSLVIFDLDNFKTVNDTHGHTVGDLLLINVS 399

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE---NSQINISSGPSI 216
             +  +  T     R GG+EF      +    A  +A +LR  I+    S  N+    +I
Sbjct: 400 KTVQDILRTTDIFARYGGDEFVIVMPETDLSSAIAVAENLRARIQGLTTSVGNVFIRTTI 459

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN--RVVCFSD 260
            I +++ IA   ++     II  AD+ALY+AK SG+N  R + F D
Sbjct: 460 SIGLTSYIATLGNRSR-EQIIDIADKALYIAKHSGKNSTRALKFPD 504


>gi|315619367|gb|EFU99911.1| protein gmr [Escherichia coli 3431]
 gi|323162350|gb|EFZ48205.1| protein gmr [Escherichia coli E128010]
          Length = 639

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 197 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 256

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 257 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMAS--- 313

Query: 201 KIIENSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 314 RILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 373

Query: 259 S 259
           +
Sbjct: 374 T 374


>gi|77362085|ref|YP_341659.1| putative GGDEF sensory box protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876996|emb|CAI89213.1| putative GGDEF sensory box protein [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 291

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 79/158 (50%), Gaps = 15/158 (9%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N S  +  L +        N   SI+F DI+ FK IND +GH +GDK++  ++
Sbjct: 132 DGLTGLPNRSLLMDRLQAAIVKAERENTLFSILFIDINGFKAINDTYGHLMGDKLLQHIA 191

Query: 160 DQLVVVFGTPMFVGRLGGEEF--AAAALGSSEQEAAILANDLRKIIENSQINISSGP-SI 216
            +L+ V      VGRLGG+EF      L S+    AI     RKII   Q        S+
Sbjct: 192 QRLLSVVREYDTVGRLGGDEFLIVLEGLSSAGDTTAI----KRKIIGQFQQPFEVDELSL 247

Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
           +++ S GIA    H E    +I  ADQA+Y  K+   N
Sbjct: 248 NVSPSIGIANYPTHGETDHQLIKHADQAMYKIKRMSAN 285


>gi|148547288|ref|YP_001267390.1| diguanylate cyclase [Pseudomonas putida F1]
 gi|148511346|gb|ABQ78206.1| diguanylate cyclase [Pseudomonas putida F1]
          Length = 419

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 101/201 (50%), Gaps = 11/201 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           L+  +SLV  ++ I L+   ++G++    +    RI++L+  D L+ L N  A     G 
Sbjct: 214 LIIQVSLVEGAMAIMLIALSMTGTVR---YRREERIARLAARDPLTALYNRRALEVRAGH 270

Query: 125 YNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           + + +S      ++  DID FK +ND  GH  GD+++  LS+ +           RLGG+
Sbjct: 271 FFKDVSPAQPGALLLIDIDNFKLVNDLHGHIAGDRLLIALSEMIRTALPERSLAARLGGD 330

Query: 179 EFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII 237
           EF     G+S +    L + LR+  +  +   + +  ++ ++I A + ++     ++ +I
Sbjct: 331 EFVILLSGASSERVMELGSGLREQFQQYADKTVPTPQAVTLSIGANVFDQPPAS-LAALI 389

Query: 238 YRADQALYVAKKSGRNRVVCF 258
            + D ALY +K+ GR+ +  F
Sbjct: 390 EQGDVALYQSKRGGRDSIRFF 410


>gi|327193767|gb|EGE60644.1| diguanylate cyclase [Rhizobium etli CNPAF512]
          Length = 593

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 11/160 (6%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           SR D L+GL N         ++ E      +++ FDID+FK+IND   H VGD V+  ++
Sbjct: 434 SRTDPLTGLGNRRELQLRCRNWVESGVTHAALLLFDIDHFKRINDILSHAVGDVVLWHVA 493

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE---NSQINISSGPSI 216
             L  +        R+GGEEF     G++  +A   A  LR  ++    S+I+    P +
Sbjct: 494 GLLGGIGPAGSLAIRMGGEEFLLLLPGTTAGDAFADAERLRLRVQYHDWSEID----PRL 549

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +T S G+A+    + +   ++ AD  LY AK +GRNR +
Sbjct: 550 EVTCSIGLADWSLTDKLEAALHIADANLYAAKNAGRNRCM 589


>gi|304411388|ref|ZP_07393002.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|307305290|ref|ZP_07585038.1| diguanylate cyclase [Shewanella baltica BA175]
 gi|304350243|gb|EFM14647.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|306911593|gb|EFN42018.1| diguanylate cyclase [Shewanella baltica BA175]
          Length = 341

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 100/214 (46%), Gaps = 12/214 (5%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILK---ELFISYNRISQLSR---IDCLSGL 112
           + +E +L    SLV  S  I     + +G + K   E+     ++ Q  +    D L+G 
Sbjct: 128 FSVEQVLDLVRSLVKESDNIRSSTEFFTGQLQKAQTEIDALKKKLEQTEKDVLYDALTGC 187

Query: 113 LNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N  AF S     L        ++  DID+FK  ND +GH +GD+V+  ++ +L      
Sbjct: 188 FNRRAFDSDFAGMLAQAPLGTCLILADIDHFKVFNDTYGHQLGDQVLRAVAKRLQESCRD 247

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
            + + R GGEEF      S  + A  LA  +R+ +E   +          +I+ S G+A+
Sbjct: 248 GVKLYRFGGEEFVIIVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDERINNISASFGVAQ 307

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              K+    +I  AD+ LY AK+ GRNRV+  S+
Sbjct: 308 WQEKQTGMQLIEAADKLLYDAKRLGRNRVLPISN 341


>gi|266621765|ref|ZP_06114700.1| putative GGDEF domain protein [Clostridium hathewayi DSM 13479]
 gi|288866561|gb|EFC98859.1| putative GGDEF domain protein [Clostridium hathewayi DSM 13479]
          Length = 896

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 18/173 (10%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           R+ +L+  D L+GL N  A  + +  Y      +++  ++  D+D FK++ND +GH  GD
Sbjct: 416 RLLELAEQDSLTGLYNRGAVQTLIQRYVVKARPSDRCVLMILDVDNFKKVNDIYGHLSGD 475

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILANDLRKIIENSQ 207
            ++  ++D L  +F     + R+GG+EFA        +  + ++A  +    R I++   
Sbjct: 476 AMLVDIADMLRRLFPENAVLARVGGDEFAVLLYHVKTMEEAAEKADQILKSFRSILKQQN 535

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             IS    I      G       +  ++I   AD ALY AK+ G+NR   +++
Sbjct: 536 DMISCSIGISTAPENG-------DNFASIYKNADAALYQAKRQGKNRYAFYAE 581


>gi|229064998|ref|ZP_04200296.1| Sensory box protein [Bacillus cereus AH603]
 gi|228716299|gb|EEL68011.1| Sensory box protein [Bacillus cereus AH603]
          Length = 735

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 17/179 (9%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L+    ++  ++  D L+GL N   F   L +           ++++F D+D FK+IND 
Sbjct: 296 LYEKQKQVEHMAFHDALTGLPNRRKFEKDLKTILNLAQNNTNDVAVMFLDLDRFKKINDR 355

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIE 204
            GH VGD ++  ++ +L     +   V R GG+EF        SE+ A+ +A  +  I+ 
Sbjct: 356 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPDMYSEKSASFIAEQILTILN 415

Query: 205 N----SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                    +S  PSI I +        +   ++ ++  AD A+Y AK +G+NR V FS
Sbjct: 416 KPYFIKDEELSVTPSIGIAMYPD-----YGTDVTELMKNADMAMYRAKANGKNRFVFFS 469


>gi|15801891|ref|NP_287911.1| RNase II stability modulator [Escherichia coli O157:H7 EDL933]
 gi|15831112|ref|NP_309885.1| RNase II stability modulator [Escherichia coli O157:H7 str. Sakai]
 gi|168762710|ref|ZP_02787717.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O157:H7 str. EC4501]
 gi|168799587|ref|ZP_02824594.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O157:H7 str. EC508]
 gi|217329471|ref|ZP_03445551.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O157:H7 str.
           TW14588]
 gi|291282375|ref|YP_003499193.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O55:H7 str. CB9615]
 gi|12515503|gb|AAG56527.1|AE005378_6 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13361323|dbj|BAB35281.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|189367010|gb|EDU85426.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O157:H7 str. EC4501]
 gi|189377978|gb|EDU96394.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O157:H7 str. EC508]
 gi|217317910|gb|EEC26338.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O157:H7 str.
           TW14588]
 gi|290762248|gb|ADD56209.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O55:H7 str. CB9615]
 gi|320189960|gb|EFW64612.1| hypothetical protein ECoD_03443 [Escherichia coli O157:H7 str.
           EC1212]
 gi|320637183|gb|EFX07009.1| RNase II stability modulator [Escherichia coli O157:H7 str. G5101]
 gi|320653504|gb|EFX21609.1| RNase II stability modulator [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320659204|gb|EFX26793.1| RNase II stability modulator [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320663997|gb|EFX31184.1| RNase II stability modulator [Escherichia coli O157:H7 str. LSU-61]
 gi|326341051|gb|EGD64844.1| hypothetical protein ECF_03601 [Escherichia coli O157:H7 str. 1125]
          Length = 661

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMAS--- 335

Query: 201 KIIENSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 336 RILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 S 259
           +
Sbjct: 396 T 396


>gi|315179714|gb|ADT86628.1| Signaling protein with a sensor domain, CHASE, GGDEF and EAL
           domains [Vibrio furnissii NCTC 11218]
          Length = 736

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 89/165 (53%), Gaps = 15/165 (9%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL N   F       ++   +  +  ++ + D+D FK +ND++GH +GD+V
Sbjct: 575 RLATQDELTGLANRRHFYDLAHDHLAQARAQGQPFTLYYMDLDGFKDVNDSYGHSMGDEV 634

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQINISS 212
           +  ++ +L         V R GG+EF  A L +++ +    +   ++IIE  ++ I I  
Sbjct: 635 LKVVAHRLQNSVRAQDIVARFGGDEF-VAILRNTDDDCFYKS---QQIIEAISAPIVIDG 690

Query: 213 GPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            P+ I I+I A +    H E I  ++ +AD ALY AK+ G+N +V
Sbjct: 691 SPALIGISIGAAVYP-THGETIEALLVKADSALYQAKRRGKNCLV 734


>gi|300916315|ref|ZP_07133062.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
 gi|300416404|gb|EFJ99714.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
          Length = 442

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 92/177 (51%), Gaps = 21/177 (11%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-IVFFDIDYFKQI 142
           + S + +K+L+  YN     + +D L+  +   +F   L +  EK   +  FD+D FK I
Sbjct: 279 FFSAADVKKLYSMYNS----AFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNI 334

Query: 143 NDNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           ND FGH +GD    KV+  L  QL V  G    V R GG+EFA    G + +E   L + 
Sbjct: 335 NDTFGHLLGDEVLMKVVKILKSQLPVDKGK---VYRFGGDEFAVIYTGGTLEE---LLSI 388

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           L++I+ + Q+      SI+++ S G+A       +  +   AD+ LY +KK+GR ++
Sbjct: 389 LKEIV-HFQVG-----SINLSTSIGVAHSNECPTVERLKMLADERLYKSKKNGRAQI 439


>gi|301017630|ref|ZP_07182304.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
 gi|300400124|gb|EFJ83662.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
          Length = 661

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMAS--- 335

Query: 201 KIIENSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 336 RILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 S 259
           +
Sbjct: 396 T 396


>gi|254792876|ref|YP_003077713.1| modulator of Rnase II stability [Escherichia coli O157:H7 str.
           TW14359]
 gi|254592276|gb|ACT71637.1| modulator of Rnase II stability [Escherichia coli O157:H7 str.
           TW14359]
          Length = 525

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMAS--- 335

Query: 201 KIIENSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 336 RILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 S 259
           +
Sbjct: 396 T 396


>gi|194333900|ref|YP_002015760.1| diguanylate cyclase [Prosthecochloris aestuarii DSM 271]
 gi|194311718|gb|ACF46113.1| diguanylate cyclase [Prosthecochloris aestuarii DSM 271]
          Length = 432

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 9/180 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   ++ +L   D  + L N+  F       ++    YN+ +S+   DID+FK  N
Sbjct: 246 QDLEMKNRKLDELFIKDEKTNLYNYRHFKEHLIGDVARAKRYNDLVSLAMLDIDHFKAYN 305

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILANDLRKI 202
           D  GH  GD+V+  +++ ++          R GGEEFA       + Q   I+   +  I
Sbjct: 306 DANGHIAGDRVLQRIAEIILEECRHTDMPARFGGEEFAILFPRTDAAQARGIVVRLMEVI 365

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                    + P   +TISAGIA   H  +   ++I  AD+ALY +K +GRN+V+ + +I
Sbjct: 366 CAEPFERERNQPGGRLTISAGIATFPHDAQGWYSLINNADRALYESKSTGRNKVINYEEI 425


>gi|156935539|ref|YP_001439455.1| hypothetical protein ESA_03401 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533793|gb|ABU78619.1| hypothetical protein ESA_03401 [Cronobacter sakazakii ATCC BAA-894]
          Length = 590

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 17/171 (9%)

Query: 98  NRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           + +++ +  D L+GL N         A IS        +S +  DID+FK +ND +GH  
Sbjct: 416 DELTEKAMFDSLTGLRNRYHLEDALYACISQAEMTGSPVSCLMIDIDHFKSLNDQYGHDA 475

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  ++  +  V G    V R GGEEF     G  + +A  LA   R + + S++++
Sbjct: 476 GDAVLKEVARTIRSVPGETAQVFRYGGEEFLMLLPGMPQAQAHALAT--RILTQVSELSL 533

Query: 211 SS-----GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                  GP   +++S G+A         ++I  AD ALY+AK+ GR+R+V
Sbjct: 534 RYNGLEIGP---VSVSIGLATWPDHARRESLIKNADIALYLAKEMGRSRIV 581


>gi|226939063|ref|YP_002794134.1| Sensory box/GGDEF family protein [Laribacter hongkongensis HLHK9]
 gi|226713987|gb|ACO73125.1| Sensory box/GGDEF family protein [Laribacter hongkongensis HLHK9]
          Length = 1041

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 16/166 (9%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I + +  D L+GL N  A        I+S+  +   L+++F D+D FK IND  GH VG
Sbjct: 588 QIERYAHFDALTGLANRHALYRRLGQAITSVHQHQHPLAVLFVDLDKFKTINDTLGHAVG 647

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE----AAILANDLRKIIENSQ 207
           D V+  ++ +L    G    + RLGG+EF     G+ E+     AA +   +   +    
Sbjct: 648 DVVLREVAGRLSDFAGPDDILARLGGDEFLLVLPGADERAASEVAACILTAMSVPVRVDG 707

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             + + P+I +++     E         +I  AD A+Y AK  GRN
Sbjct: 708 RELPTTPTIGVSLYPRDGEEA-----DDLIRNADIAMYQAKARGRN 748


>gi|254975969|ref|ZP_05272441.1| putative signaling protein [Clostridium difficile QCD-66c26]
 gi|255093356|ref|ZP_05322834.1| putative signaling protein [Clostridium difficile CIP 107932]
 gi|255315102|ref|ZP_05356685.1| putative signaling protein [Clostridium difficile QCD-76w55]
 gi|255517772|ref|ZP_05385448.1| putative signaling protein [Clostridium difficile QCD-97b34]
 gi|255650885|ref|ZP_05397787.1| putative signaling protein [Clostridium difficile QCD-37x79]
          Length = 628

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 14/164 (8%)

Query: 107 DCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+ L N       L    G+ ++ +  +  DID FK  NDN+GH  GDKVI  ++D +
Sbjct: 463 DGLTKLYNRRYLEQQLDLFNGTRDKNMVAILVDIDCFKSYNDNYGHLAGDKVIVKVTDII 522

Query: 163 VVVF-GTPMFVGRLGGEEF-----AAAALGSSE-QEAAILANDLRKIIENSQI-NISSGP 214
             VF      + R GGEE      +  ++G  E     +    + K++E   I +I S  
Sbjct: 523 RSVFIDITEHIIRYGGEEILILVDSIESIGVEEIDNIELYIKRVFKLLEFEGIEHIYSKI 582

Query: 215 SIHITISAGIA-ERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
             +ITISAG++ +RC  ++ +  +I  AD+ LY +KK+GRN+ +
Sbjct: 583 KNYITISAGVSIKRCRSRKDVEILIEDADKNLYKSKKAGRNQYI 626


>gi|254503180|ref|ZP_05115331.1| hypothetical protein SADFL11_3219 [Labrenzia alexandrii DFL-11]
 gi|222439251|gb|EEE45930.1| hypothetical protein SADFL11_3219 [Labrenzia alexandrii DFL-11]
          Length = 728

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 12/173 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPV 150
           +R    +  D L+GL N   F+   G    K S       +   D+D FK+IND  GHP 
Sbjct: 290 DRAQYYAERDQLTGLYNRHYFMRIAGDLLHKSSPNCRSCGVAIIDLDDFKEINDCHGHPA 349

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD  +  L+++LV   G    V RLGG+EFA         E  +     ++++E     I
Sbjct: 350 GDSALIVLAERLVEYIGDTGIVIRLGGDEFAVVFSTHLSWEETV--QYFKRLLEEVSKPI 407

Query: 211 S-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  G     + S G+A++       ++ ++ +AD A+Y AK +G N V CFS+
Sbjct: 408 AWEGFLFECSASLGLAKKTQAIGSDVNDLLQQADLAVYDAKAAGGNAVRCFSE 460


>gi|209695436|ref|YP_002263365.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238]
 gi|208009388|emb|CAQ79662.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238]
          Length = 583

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 14/169 (8%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   +  ++         + +++S++  D+D+FK+ NDN+GH  GD V+  + 
Sbjct: 395 DPLTGLYNRRYYEETINQELMRSNRHKQEMSLLMLDLDHFKRFNDNYGHDAGDYVLKTIG 454

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP-S 215
             L+        + RLGGEE A     +S + A  +AN L + + +  +   ++S G  S
Sbjct: 455 SLLLSTMRGEDTICRLGGEELAIILPNTSAEAATKVANSLCQSVSDLHLAIKDLSLGKLS 514

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           + I IS   A     + ++ +   AD ALY AK  GR++   + D+  N
Sbjct: 515 VSIGISTYPANGLQADDLTKL---ADIALYEAKGRGRDQSCHYDDLTQN 560


>gi|241666733|ref|YP_002984817.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240862190|gb|ACS59855.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 309

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 91/204 (44%), Gaps = 13/204 (6%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F+  E +      L I S   SL    + G  +++     ++  + S  D L+G+ N   
Sbjct: 110 FWMTEAVQKNGWMLCIASDITSL---RVHGRTVRQ---DRDQAIKASYTDELTGVANRRF 163

Query: 118 FISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
            ++ +        +     +  FDID FK IND  GH  GD V+   + ++         
Sbjct: 164 VMARVDDMLTAARHGNNGCLAVFDIDNFKHINDRLGHHAGDVVLRDFAHRIHQNVRRSDC 223

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
            GR+GGEEF      +  ++A  +   +  +I  S+  +   P    T SAGIA     +
Sbjct: 224 FGRIGGEEFLLVMPATGPEDAIAMVECMLTVIRFSR-PLPESPDFSYTCSAGIAACASSD 282

Query: 232 PISTIIYRADQALYVAKKSGRNRV 255
             S +  RADQALY AK SGR+RV
Sbjct: 283 SASELYRRADQALYAAKLSGRDRV 306


>gi|160874994|ref|YP_001554310.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160860516|gb|ABX49050.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|315267226|gb|ADT94079.1| diguanylate cyclase [Shewanella baltica OS678]
          Length = 341

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 99/214 (46%), Gaps = 12/214 (5%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILK---ELFISYNRISQLSR---IDCLSGL 112
           + +E +L    SLV  S  I     + +G + K   E+     ++ Q  +    D L+G 
Sbjct: 128 FSVEQVLDLVRSLVKESDNIRSSTEFFTGQLQKAQTEIDALKKKLEQTEKDVLYDALTGC 187

Query: 113 LNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N  AF S     L        ++  DID+FK  ND +GH +GD+V+  ++ +L      
Sbjct: 188 FNRRAFDSDFAGMLAQAPLGTCVILADIDHFKVFNDTYGHQLGDQVLRAVAKRLQESCRD 247

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              + R GGEEF      S  + A  LA  +R+ +E   +          +I+ S G+A+
Sbjct: 248 GAKLYRFGGEEFVIIVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDERINNISASFGVAQ 307

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              K+    +I  AD+ LY AK+ GRNRV+  S+
Sbjct: 308 WQEKQTGMQLIEAADKLLYDAKRLGRNRVLPISN 341


>gi|152990819|ref|YP_001356541.1| two-component response regulator [Nitratiruptor sp. SB155-2]
 gi|151422680|dbj|BAF70184.1| two-component response regulator [Nitratiruptor sp. SB155-2]
          Length = 587

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 86/181 (47%), Gaps = 20/181 (11%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  +++ D L+ L   + FI  L           E ++I+F D+D FK IND FGH +
Sbjct: 143 KRLEFMTKYDPLTNLYQRNLFIEFLEKLLKRSDRTKELMAILFLDVDNFKDINDTFGHDM 202

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-----LANDLRKIIEN 205
           GD V+  ++++L  +      V R+ G+EFA    G   +EA       L  ++RK I+ 
Sbjct: 203 GDCVLKTIANRLTSISRQEDIVSRISGDEFAMILWGLKSKEAIYSLLDRLQKEMRKPID- 261

Query: 206 SQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                 +G  I+I++S G         I  + ++ +AD A+Y  KK  +     F   ++
Sbjct: 262 -----CNGKMINISMSIGATFYPQDRAIGANELLKQADLAMYYIKKKKKGEFFIFDPYDS 316

Query: 264 N 264
           N
Sbjct: 317 N 317


>gi|114775642|ref|ZP_01451210.1| sensory transduction system regulatory protein [Mariprofundus
           ferrooxydans PV-1]
 gi|114553753|gb|EAU56134.1| sensory transduction system regulatory protein [Mariprofundus
           ferrooxydans PV-1]
          Length = 432

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 12/180 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYF 139
            ++ EL    +++ + S  D L+ + N   F + L             +L++V  DIDYF
Sbjct: 250 KLISELQEMNDKLERYSYQDGLTRVANRRMFDTLLDREWAAARRGGGRQLALVMIDIDYF 309

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           K  ND +GH  GD  +  ++  L  V   T   + R GGEEF      +  ++A  LA  
Sbjct: 310 KLYNDTYGHLAGDDCLKRIAAALSRVSKRTTDLIARYGGEEFVLLLPNTGREQAHSLAEQ 369

Query: 199 LRKIIENSQINISSGPSIH-ITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRV 255
             + I   QI  S   +   +TIS G+        +  + +I  AD+ALY AK+SGRNRV
Sbjct: 370 CLRDIAALQIPHSQSEAAEVVTISVGVTTMAPDATMQAAMLIEMADRALYRAKESGRNRV 429


>gi|95929458|ref|ZP_01312201.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
 gi|95134574|gb|EAT16230.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
          Length = 299

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 15/167 (8%)

Query: 101 SQLSR---IDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
           S+L R   +D L+G+ N  AF+ ++         Y    S++  D+DYFKQ ND +G   
Sbjct: 134 SELRRQTHLDALTGIPNRQAFMDAMDREWFRFKRYKTPFSVLALDVDYFKQFNDAYGRST 193

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-IN 209
           GDKV+ +L  +L         +GR+ G++F      S+ +    +AN +  II     ++
Sbjct: 194 GDKVLQWLVKRLRSSLRRADILGRIEGDKFMILLSYSNRKSTMKVANMVLDIIRREPCLD 253

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +     I +T+S G       E +  ++ R ++AL  +K+ GRN+V 
Sbjct: 254 L----PIAMTVSIGAVTIEENETMDQLMDRVEKALERSKEMGRNQVT 296


>gi|104784060|ref|YP_610558.1| sensory box protein [Pseudomonas entomophila L48]
 gi|95113047|emb|CAK17775.1| putative sensory box protein [Pseudomonas entomophila L48]
          Length = 897

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 8/175 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHP 149
           ++  RI +L+  D L+ L N  AFI +L        N  + ++  DID FK+IND+ GH 
Sbjct: 460 LAQQRIERLAYTDNLTNLGNRPAFIRNLDERFARDSNTPICLLLVDIDNFKRINDSLGHQ 519

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GDK++  L+ +L     +   + R    EFA     +S ++   +A  L + ++     
Sbjct: 520 TGDKLLISLARRLRNSLSSGGSLARFASNEFAVLLDDTSLEDGQGVAQQLLRTLDKPM-- 577

Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                 I++T S G+A    H    +T++  A  AL+ AK +G+++V  F+++ N
Sbjct: 578 FVDNQLINVTASVGLACAPLHGSDPATLMKNAGLALHKAKANGKHQVQVFTEVLN 632


>gi|78486270|ref|YP_392195.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
            XCL-2]
 gi|78364556|gb|ABB42521.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Thiomicrospira crunogena XCL-2]
          Length = 1289

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 88/161 (54%), Gaps = 8/161 (4%)

Query: 97   YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
            Y+ ++QL     L+  L  + F S    +N  L+++F D+D FK++ND  GH  GD+++ 
Sbjct: 856  YDALTQLPNRSLLADRLQQAIFASQ--RHNSLLAVLFIDLDGFKKVNDLHGHDAGDELLV 913

Query: 157  FLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS-SGP 214
             LS ++  +      + R+GG+EF    +   +  +  ++   LR+++E++  ++   G 
Sbjct: 914  ELSKRMKNILREEDTLARIGGDEFIVVLVNLDAPSDCEMI---LRRLLESTSESVDIEGE 970

Query: 215  SIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNR 254
             + ++ S G+         + ++ R ADQA+Y AK+SG+NR
Sbjct: 971  VVSVSASIGVTFYPKDNVDADLLMRHADQAMYQAKQSGKNR 1011


>gi|316933102|ref|YP_004108084.1| PAS/PAC sensor -containing diguanylate cyclase [Rhodopseudomonas
           palustris DX-1]
 gi|315600816|gb|ADU43351.1| diguanylate cyclase with PAS/PAC sensor [Rhodopseudomonas palustris
           DX-1]
          Length = 645

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 8/161 (4%)

Query: 99  RISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+++L+R D L+GL N      FI    +    ++++  D+D FK  ND+FGH  GD  +
Sbjct: 457 RLAELARTDGLTGLPNRRSLDGFIDRTAASATTMAVLMIDVDDFKGFNDHFGHQGGDDAL 516

Query: 156 AFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
             L +    +V G   F  R GGEEF     G+    A   A+ LR  +    +   +  
Sbjct: 517 RQLGNLFSSLVTGMHGFAARYGGEEFTIVLPGADAAAAMSFADSLRASVRGLAVRNPASA 576

Query: 215 SIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRN 253
              +T+S G A  C   P  +  ++  AD ALY AK+ GR+
Sbjct: 577 HGCLTVSIGFA--CGTAPFDSALLLRDADIALYEAKRRGRD 615


>gi|296105787|ref|YP_003617487.1| PleD like two-component system [Legionella pneumophila 2300/99
           Alcoy]
 gi|295647688|gb|ADG23535.1| PleD like two-component system [Legionella pneumophila 2300/99
           Alcoy]
          Length = 662

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 69/138 (50%), Gaps = 11/138 (7%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAAL 185
           +I+  D+D+FK+IND FGH  GD    F+  ++  +    + +G    R GGEEF     
Sbjct: 528 AILMLDLDHFKKINDTFGHEAGD----FVLKEIGQILNNDIRLGDVATRYGGEEFVLLLF 583

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQA 243
                 A   A++LR  I   Q+   +     +T S GI+      K P   +I  AD+A
Sbjct: 584 DVDANAAKTRADNLRSAISKLQVKYGAQYVGQVTASIGISIYPDDAKSP-DELIEAADKA 642

Query: 244 LYVAKKSGRNRVVCFSDI 261
           LY AK  GRN V+ FS+I
Sbjct: 643 LYQAKNKGRNMVLLFSEI 660


>gi|293607462|ref|ZP_06689800.1| sensory box/GGDEF family protein [Achromobacter piechaudii ATCC
           43553]
 gi|292814164|gb|EFF73307.1| sensory box/GGDEF family protein [Achromobacter piechaudii ATCC
           43553]
          Length = 726

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 9/180 (5%)

Query: 87  GSILK---ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFK 140
           G+I++   E   S +R+ +L+  D L+ L N  A+   L       ++L+++  D+D FK
Sbjct: 285 GAIIRDITERRQSEDRLYRLATRDPLTDLPNRGAWRECLTKALKKEKQLTVLLLDLDGFK 344

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND FGH  GD V+  L+ +L  +F   + +GRLGG+EF     G+  + A   A  L 
Sbjct: 345 EINDTFGHSAGDAVLKQLAARLDALFDQTIMLGRLGGDEFVVLLPGAENRAAIAAAEALI 404

Query: 201 KIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +      +  G  I + +S G+A    H      ++  AD ALY AK +G+ R   F+
Sbjct: 405 ASLSAPYDYL--GHLIEVGVSVGVALGPQHGSVPEDLLGAADLALYKAKAAGKGRYELFT 462


>gi|227819118|ref|YP_002823089.1| hypothetical protein NGR_b08800 [Sinorhizobium fredii NGR234]
 gi|227338117|gb|ACP22336.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
          Length = 649

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 114/248 (45%), Gaps = 17/248 (6%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPF--YGLEYILVENLSLVIISITI 78
           S S  T+++  +I   + +A  +F+A  FL   G T F    L  ++V    L++++   
Sbjct: 140 SVSCLTYLLPAAIVVGL-VANAVFLA--FLVPSGNTVFLTMSLNVVVVSGAFLLVLAGNY 196

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
                 +   +  E     N+  +L+ ID L+ L N  +F + L        S   +L++
Sbjct: 197 REFTAQVEAQLRTEALGRENQ--RLANIDSLTHLPNRRSFFARLSAECAAASSNQSRLAV 254

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D FK +ND +GHP GD ++  +  +L        F+ RLGG+E+  A + +S  E
Sbjct: 255 AMLDLDGFKAVNDLYGHPTGDCLLVEVGRRLEQACPGDAFLARLGGDEY--AIIVASADE 312

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
           A +L    R   E +   +  G S+ I+ S G A    H      +   AD ALY AK++
Sbjct: 313 ADLLRLGDRICEEVAAPYVLDGISVLISASVGFAVYPDHAAEPDLVFEYADYALYEAKQN 372

Query: 251 GRNRVVCF 258
              R V F
Sbjct: 373 KTGRPVLF 380


>gi|212637394|ref|YP_002313919.1| sensory box/GGDEF/EAL domain-containing protein [Shewanella
           piezotolerans WP3]
 gi|212558878|gb|ACJ31332.1| Sensory box/GGDEF/EAL domain protein [Shewanella piezotolerans WP3]
          Length = 710

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 29/187 (15%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQIN 143
           Y + + L   F++  R+ QL      SG +               L+++F D+D FK+IN
Sbjct: 259 YDALTDLPNRFLALRRLEQLVDASARSGKM---------------LAVIFLDLDDFKKIN 303

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL--- 199
           D+ GH  GD+++   +D+L+        VGRLGG+EF     G SS  +A  LA +L   
Sbjct: 304 DSLGHEAGDQLLITAADRLMKATRKEDTVGRLGGDEFIILLDGLSSANDAQPLAENLIGG 363

Query: 200 -RK--IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            RK   I+N Q+ +++   I I  + G      K P S ++  AD A+Y  K  GRN   
Sbjct: 364 FRKPFYIDNRQLILTASIGIAIYPNDG------KTP-SELLRNADSAMYHTKSIGRNTYS 416

Query: 257 CFSDIEN 263
            F+   N
Sbjct: 417 YFTHAMN 423


>gi|218246974|ref|YP_002372345.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8801]
 gi|218167452|gb|ACK66189.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8801]
          Length = 732

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 98/204 (48%), Gaps = 17/204 (8%)

Query: 78  ISLLLGYISGSILKELFISY-----NRISQLSRIDCLSGLLNHSAF-------ISSLGSY 125
           +SLL   I+ +I ++ F  +      ++ Q++ +D L+ + N   F          +   
Sbjct: 245 LSLLASQIAIAIQQDSFYQHLNAINQKLEQIAFVDRLTQISNRCYFEQYFTQEWRRMARE 304

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAA 184
            + LS++  D+D+FK  ND +GH  GD  +  ++  +      P   V R GGEEF    
Sbjct: 305 KQPLSLILCDVDFFKSYNDTYGHLEGDFCLQKIAQAINTSIHRPGDLVARYGGEEFVILL 364

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPI--STIIYRAD 241
             +    A  LA  +R  ++  ++  +    S  +T+S G+A     E +  + +I  AD
Sbjct: 365 PNTKASGALYLAEQIRSQVKGLRMTSACQEVSPFVTLSLGVASFIPDESLLPAMLISEAD 424

Query: 242 QALYVAKKSGRNRVVCFSDIENNT 265
            ALY AKK GR+RV  F  ++N+T
Sbjct: 425 HALYEAKKQGRDRVG-FKAVDNST 447


>gi|119953208|ref|YP_945417.1| two-component response regulator [Borrelia turicatae 91E135]
 gi|119861979|gb|AAX17747.1| two-component response regulator [Borrelia turicatae 91E135]
 gi|225696317|gb|ACO06865.1| Rrp1 [Borrelia turicatae]
 gi|225696319|gb|ACO06866.1| Rrp1 [Borrelia turicatae]
          Length = 310

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 18/168 (10%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
             L+RID L+ + N   F             + + + +   DIDYFK+ NDN+GH  GD+
Sbjct: 144 KNLARIDGLTQIPNRRFFTDKFAKSWMQALEHKKNVIVGMLDIDYFKKYNDNYGHTNGDE 203

Query: 154 VIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQE----AAILANDLRKI-IENSQ 207
            +  ++  L  +     + + R GGEEF   ++  S  E     +IL  D+R + I +  
Sbjct: 204 CLRLIAKSLNKIAIKYKIDIARYGGEEFILFSVNKSLNEVIKIVSILIEDIRNLEIVHEY 263

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
            NIS+     +T+S G+AE+  +    + II  AD  LY AK SGRN+
Sbjct: 264 SNISN----FVTVSIGLAEQIPYDSNFTNIIKLADDKLYEAKISGRNQ 307


>gi|82544260|ref|YP_408207.1| RNase II stability modulator [Shigella boydii Sb227]
 gi|307137927|ref|ZP_07497283.1| RNase II stability modulator [Escherichia coli H736]
 gi|331641849|ref|ZP_08342984.1| protein gmr [Escherichia coli H736]
 gi|81245671|gb|ABB66379.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|331038647|gb|EGI10867.1| protein gmr [Escherichia coli H736]
          Length = 661

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMAS--- 335

Query: 201 KIIENSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 336 RILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 S 259
           +
Sbjct: 396 T 396


>gi|56697591|ref|YP_167960.1| diguanylate cyclase, putative/response regulator [Ruegeria pomeroyi
           DSS-3]
 gi|56679328|gb|AAV95994.1| diguanylate cyclase, putative/response regulator [Ruegeria pomeroyi
           DSS-3]
          Length = 462

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 31/176 (17%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q +  D ++GL N    +  L           +  +++  D+D+FK IND FGHP GD V
Sbjct: 288 QAALTDPMTGLSNRRHALPELDRILHEATETGQPFAVMLADLDHFKGINDRFGHPAGDAV 347

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEF--------AAAALGSSEQ-------EAAILANDL 199
           +   + +L         + R+GGEEF           ALG++ +       E  ++   L
Sbjct: 348 LIETARRLRSQMRPGDLLARIGGEEFLIVLPGLSQTQALGAASRLCSRINGEPFVVPGQL 407

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           R +   + I +     + +  +AG A+    E    +I  AD+ALY AK +GRNRV
Sbjct: 408 RPVPVTTSIGL-----VTVAPAAGAAQLSAGE----LIAHADRALYRAKDTGRNRV 454


>gi|113971088|ref|YP_734881.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-4]
 gi|113885772|gb|ABI39824.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-4]
          Length = 1009

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 13/174 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
           S + I + +  D L+GL N    +  LG+            +++F D+DYFK++ND  GH
Sbjct: 573 SEHLIWKQANYDTLTGLPNRRMLLEYLGAEIRSADRNRNHFALMFLDLDYFKEVNDTLGH 632

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENS 206
            +GD ++   +++L         V RLGG+EF    +A+   +    +  + LR+I   S
Sbjct: 633 AMGDLLLIETANRLKSCVRDADVVARLGGDEFTVVLSAMADHKGIERVAEHILRRI---S 689

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  +    + +I+ S GI         I  ++  ADQA+Y AK  GRNR   F+
Sbjct: 690 EPYVLGEETAYISASIGITLYPDDATSIEGLLKHADQAMYAAKDQGRNRFNYFT 743


>gi|114048322|ref|YP_738872.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-7]
 gi|113889764|gb|ABI43815.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-7]
          Length = 1009

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 13/174 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
           S + I + +  D L+GL N    +  LG+            +++F D+DYFK++ND  GH
Sbjct: 573 SEHLIWKQANYDTLTGLPNRRMLLEYLGAEIRSADRNRNHFALMFLDLDYFKEVNDTLGH 632

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENS 206
            +GD ++   +++L         V RLGG+EF    +A+   +    +  + LR+I   S
Sbjct: 633 AMGDLLLIETANRLKSCVRDADVVARLGGDEFTVVLSAMADHKGIERVAEHILRRI---S 689

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  +    + +I+ S GI         I  ++  ADQA+Y AK  GRNR   F+
Sbjct: 690 EPYVLGEETAYISASIGITLYPDDATSIEGLLKHADQAMYAAKDQGRNRFNYFT 743


>gi|296273318|ref|YP_003655949.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
 gi|296097492|gb|ADG93442.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
          Length = 365

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 112/218 (51%), Gaps = 24/218 (11%)

Query: 55  LTPFYGLEYILVENL-SLVIISITISLLLGYISGSILKE---LFISYNRISQLSRIDCLS 110
           L  +  ++ +L  N+ +LVI S  I + L Y   SI+K+   L I   +    S  D ++
Sbjct: 151 LNRYENMKKLLFYNIVALVIFSFAIFIYLTY---SIIKKDNHLTILNKKYKIESITDSMT 207

Query: 111 GLLNHSAF------ISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            L N   F      I  + + N+ + + + FDID+FKQ ND +GH +GDK +  ++++L 
Sbjct: 208 MLYNRGYFDTIFDSIPVVSNSNKWQTAFIMFDIDFFKQYNDTYGHDMGDKTLKAVANELK 267

Query: 164 VVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLR---KIIENSQI-NISSGPSIHI 218
             F     +V RLGGEEF A      ++   IL N L    K++E  +I +  S  + ++
Sbjct: 268 KYFNKEYEYVFRLGGEEFGAILFDVDKE---ILENCLAAILKLVEFLKIEHKESKANKYV 324

Query: 219 TISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           T+S G  I E       + +   AD+ LY +K++GRN+
Sbjct: 325 TVSIGAVIYEPGSNVSTNRLYKLADEKLYKSKQNGRNQ 362


>gi|229513272|ref|ZP_04402737.1| GGDEF domain protein [Vibrio cholerae TMA 21]
 gi|229349682|gb|EEO14637.1| GGDEF domain protein [Vibrio cholerae TMA 21]
          Length = 412

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 23/168 (13%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+ +    A    L     K ++   D+D+FK+ ND +GH  GD V+  ++ +L  + 
Sbjct: 241 DPLTQIPGRQALDQDLKHIGRKFTLAMLDVDHFKKFNDTYGHDTGDDVLKLVASRLREIN 300

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSIH------ 217
           G    V R GGEEF+    G   ++       LR+ IE+ ++   + +  P  H      
Sbjct: 301 GKAR-VYRYGGEEFSIIYKGKLAKDVLPFIEALRQDIESYELVIRDTNQRPKSHAEGAKK 359

Query: 218 -----------ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
                      ITIS G+ +   ++ PI   +  AD ALY AK++GRN
Sbjct: 360 RSRKSNSDIVTITISIGVCDSELYRHPIEA-LKAADGALYKAKQAGRN 406


>gi|261341521|ref|ZP_05969379.1| GGDEF family protein [Enterobacter cancerogenus ATCC 35316]
 gi|288316320|gb|EFC55258.1| GGDEF family protein [Enterobacter cancerogenus ATCC 35316]
          Length = 501

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 27/206 (13%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSR--------IDCLSGLLNHSAFIS 120
           L+ + + I  S+  G I  + ++EL       SQ  +         D L+GL N  AF +
Sbjct: 305 LNAIFMRIAASIRGGTIKPASVEELIFEEIHSSQQRQEKTAHEALTDGLTGLKNRRAFDA 364

Query: 121 SLGSYNEKLS--IVFFDIDYFKQINDNFGHPVGD---KVIAFLSDQLVVVFGTPMFVGRL 175
                N + +  +   DID FK IND +GH VGD   K +A L  +L  +    ++  R 
Sbjct: 365 DAARCNSEPNTHLAMVDIDNFKMINDTWGHTVGDLVLKTVAELGSRLRGLENITLY--RY 422

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP----SIHITISAGIAERCHKE 231
           GGEEFA    G S ++A          +E  +I +++       ++++ SAG+  +    
Sbjct: 423 GGEEFAVLFQGISAEKAL-------SYLEKWRITVNTRSFREHDLNVSFSAGLC-KMGGT 474

Query: 232 PISTIIYRADQALYVAKKSGRNRVVC 257
            +   + RAD+ LY AKKSG+N+++ 
Sbjct: 475 SLPDTLGRADKLLYQAKKSGKNKIIA 500


>gi|218553843|ref|YP_002386756.1| RNase II stability modulator [Escherichia coli IAI1]
 gi|218694861|ref|YP_002402528.1| RNase II stability modulator [Escherichia coli 55989]
 gi|256018465|ref|ZP_05432330.1| RNase II stability modulator [Shigella sp. D9]
 gi|300819000|ref|ZP_07099204.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
 gi|300926672|ref|ZP_07142448.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|301326985|ref|ZP_07220274.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|332279518|ref|ZP_08391931.1| RNase II stability modulator [Shigella sp. D9]
 gi|218351593|emb|CAU97305.1| modulator of Rnase II stability [Escherichia coli 55989]
 gi|218360611|emb|CAQ98169.1| modulator of Rnase II stability [Escherichia coli IAI1]
 gi|300417338|gb|EFK00649.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|300528461|gb|EFK49523.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
 gi|300846368|gb|EFK74128.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|332101870|gb|EGJ05216.1| RNase II stability modulator [Shigella sp. D9]
          Length = 661

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMAS--- 335

Query: 201 KIIENSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 336 RILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 S 259
           +
Sbjct: 396 T 396


>gi|167624748|ref|YP_001675042.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167354770|gb|ABZ77383.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 199

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 92/188 (48%), Gaps = 18/188 (9%)

Query: 32  SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK 91
           SI  S+FI        +F F++GL        I    L++VI SI   L    + G ++K
Sbjct: 22  SILVSVFI-------TLFTFHVGLGEAASHIGIF---LAIVIPSIVAPLASWQLIGLLMK 71

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
              +    + +L+ ID L+ LLN  AF       I+        LS++  D+D FK IND
Sbjct: 72  IDRLE-KEMRRLATIDPLTELLNRRAFFHDAEIYINCAKRELTNLSVIALDLDAFKHIND 130

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           ++GH  GD+V+   S  L         + RLGGEEFA     +SE EA +L+  L +++ 
Sbjct: 131 SYGHSTGDQVLTHFSATLKANSRKSDLICRLGGEEFALLLPSTSENEAYVLSERLPRLLG 190

Query: 205 NSQINISS 212
           +   N++S
Sbjct: 191 SRISNMNS 198


>gi|170724662|ref|YP_001758688.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella woodyi ATCC 51908]
 gi|169810009|gb|ACA84593.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella woodyi ATCC 51908]
          Length = 870

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 9/165 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D ++ LLN  AF   L  ++E    L+I +FD++ FK IND+ GH  GD+++A ++  + 
Sbjct: 435 DPITSLLNRRAFEERLTHFSENAHSLAICYFDLEQFKLINDSCGHSAGDQMLAMVAKAIQ 494

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH--ITIS 221
                   + RLGG+EF    L    Q A  +A  ++++I    + +    + H  + +S
Sbjct: 495 SCLNKEDLLARLGGDEF---GLAIRNQSAVEVAQIVKRVISRVSLQVLHHHACHYRVGVS 551

Query: 222 AGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            GIA  R        ++  AD A   AK+ G N++  + D +  +
Sbjct: 552 VGIAIARAPYIASKELVKDADIACLAAKRKGSNQIHFYDDKDKES 596


>gi|254850976|ref|ZP_05240326.1| response regulator receiver protein [Vibrio cholerae MO10]
 gi|21885295|gb|AAL59701.1| putative response regulator [Vibrio cholerae]
 gi|254846681|gb|EET25095.1| response regulator receiver protein [Vibrio cholerae MO10]
 gi|259156308|gb|ACV96254.1| response regulator receiver protein [Vibrio cholerae Ind4]
          Length = 309

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 12/171 (7%)

Query: 95  ISYNRISQLSR----IDCLSGLLNHSAFIS----SLGSYNEKLS---IVFFDIDYFKQIN 143
           +S  R + L R    +D L+G+ N   F +     L  +  KLS   ++  DIDYFK+ N
Sbjct: 132 LSLKRQADLLRSLAFLDGLTGIYNRRYFDNVLSIQLAQHRRKLSPLAVLMIDIDYFKKYN 191

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGH  GD  +  ++  L         V R GGEEF      +    A  +A  +   +
Sbjct: 192 DTFGHLAGDDALRKVASALKHSVRQADMVARYGGEEFVMLLADTDINGAVTVAKKMLHHV 251

Query: 204 ENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
               I     P+  ++IS GIA     K   S II  ADQ LY++K+ GRN
Sbjct: 252 LELDIAHPQTPATKLSISVGIAVADEAKGYDSNIIELADQQLYLSKQRGRN 302


>gi|332094741|gb|EGI99785.1| protein gmr [Shigella boydii 3594-74]
          Length = 632

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 190 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 249

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 250 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMAS--- 306

Query: 201 KIIENSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 307 RILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 366

Query: 259 S 259
           +
Sbjct: 367 T 367


>gi|299768759|ref|YP_003730785.1| hypothetical protein AOLE_02555 [Acinetobacter sp. DR1]
 gi|298698847|gb|ADI89412.1| hypothetical protein AOLE_02555 [Acinetobacter sp. DR1]
          Length = 407

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 89/186 (47%), Gaps = 18/186 (9%)

Query: 82  LGYISGSILKELFISYNRISQLSRI-------DCLSGLLNHSAFISSL------GSYNEK 128
           L  +   +L+E+ I  N++ + +R        D L+ L N   F   L        ++ K
Sbjct: 216 LNTVFNELLEEIQIWDNQLQKENRKLSFQAHHDQLTLLPNRHYFYQILLDMFEDKGFDNK 275

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALG 186
            +++F D + FK IND FGH  GD+V+  ++++L        F+ RLGG+EFA    ++ 
Sbjct: 276 SALLFIDNNNFKAINDQFGHLAGDEVLKEMANRLQTRLRHQDFIARLGGDEFAVILHSIS 335

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
            ++   +I  N L    E   +N   G +I+ + S GIA           I +ADQA+Y 
Sbjct: 336 HADHLISIAENLLESCKEPLHLN---GQTIYFSFSVGIALSQFASSPEDFIMQADQAMYK 392

Query: 247 AKKSGR 252
           AK S  
Sbjct: 393 AKNSDE 398


>gi|256822938|ref|YP_003146901.1| PAS/PAC sensor-containing diguanylate cyclase [Kangiella koreensis
           DSM 16069]
 gi|256796477|gb|ACV27133.1| diguanylate cyclase with PAS/PAC sensor [Kangiella koreensis DSM
           16069]
          Length = 361

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 94/177 (53%), Gaps = 18/177 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKL----SIVFFDIDYFKQINDNFGHPV 150
           + + +L+  D L+GL N   F   +  L + +++L    +++F DID FK  ND++GH  
Sbjct: 175 DELQELASRDSLTGLHNRRYFGQELDRLWAVHQRLEATMAVIFIDIDSFKLYNDHYGHLE 234

Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQI 208
           GDK +  +++++   F      V R GGEEF   A   +  +  +     LR+ I + +I
Sbjct: 235 GDKALKAVAEKISESFSRKADLVARFGGEEFVVVATLENGVDCLLQHLEQLRQSIIDLKI 294

Query: 209 -NISSGPSIHITISAGIAERCHKEPI----STIIYR-ADQALYVAKKSGRNRVVCFS 259
            N  S  S ++TIS G+   C+  P     S++  R AD A+Y AKK+GRNR+   S
Sbjct: 295 ENQYSAVSPYLTISTGV---CYGIPPYDSSSSLFTRDADIAMYQAKKTGRNRIEVVS 348


>gi|119477726|ref|ZP_01617876.1| diguanylate cyclase (GGDEF domain) [marine gamma proteobacterium
           HTCC2143]
 gi|119449229|gb|EAW30469.1| diguanylate cyclase (GGDEF domain) [marine gamma proteobacterium
           HTCC2143]
          Length = 353

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 98/200 (49%), Gaps = 21/200 (10%)

Query: 74  ISITISLLL-GYISGSILKELFISYNRISQLSRIDCLSGLLNH----------SAFISSL 122
           +++T+++L+ G ++ + +       +++   +  D L+G+ N           +A     
Sbjct: 154 VAVTLTVLITGLVASAFVNSHRKLLSKVGLSAHTDYLTGIANRRSVSLEFAKETARARRN 213

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFA 181
           GS+   +S +  D+D+FK+ ND  GH  GD+ +  +++ L      P   +GR GGEEF 
Sbjct: 214 GSW---ISTLMIDVDHFKRFNDINGHAEGDECLKRVANVLKNAVARPADLLGRYGGEEFI 270

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER----CHKEPISTII 237
              + +    AA +A  LR  ++   I    G S  +T+S G          +E +  +I
Sbjct: 271 VVLIETDPLGAAKVAETLRAEVQAQNIPYEDGKSAVVTVSIGSFSSSDSGTQREDV--LI 328

Query: 238 YRADQALYVAKKSGRNRVVC 257
             AD ALY AKK+GRNRVV 
Sbjct: 329 KHADLALYKAKKAGRNRVVA 348


>gi|94263461|ref|ZP_01287274.1| GGDEF:GAF [delta proteobacterium MLMS-1]
 gi|93456191|gb|EAT06330.1| GGDEF:GAF [delta proteobacterium MLMS-1]
          Length = 488

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 12/170 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGH 148
           + R+ + +  D L+GL N   ++   G           + ++++  D+D+FK++ND +GH
Sbjct: 190 FERVRREAMHDELTGLYNRR-YLQDSGRRELHKAERARQPVALLLLDLDHFKEVNDYWGH 248

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+V+  L+  L           R GGEEF      ++  EA  LA+ LR+++E  Q+
Sbjct: 249 LRGDRVLRELAGLLRCNLRQSDVPARYGGEEFVVLLPDTASGEAGQLADKLRRLVE-EQL 307

Query: 209 NISSGPSIH-ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  G     +T + G+A        +  ++  AD+ LY  K +GRN+VV
Sbjct: 308 VLEEGEERRLVTATIGVAAYPADGNNLEELLAVADRRLYAGKTAGRNQVV 357


>gi|315135924|dbj|BAJ43083.1| RNase II stability modulator [Escherichia coli DH1]
          Length = 632

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 190 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 249

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 250 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMAS--- 306

Query: 201 KIIENSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 307 RILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 366

Query: 259 S 259
           +
Sbjct: 367 T 367


>gi|153827331|ref|ZP_01979998.1| ggdef family protein [Vibrio cholerae MZO-2]
 gi|149738751|gb|EDM53093.1| ggdef family protein [Vibrio cholerae MZO-2]
          Length = 412

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 23/168 (13%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+ +    A    L     K ++   D+D+FK+ ND +GH  GD V+  ++ +L  + 
Sbjct: 241 DPLTQIPGRQALDQDLKHIGRKFTLAMLDVDHFKKFNDTYGHDTGDDVLKLVASRLREIN 300

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSIH------ 217
           G    V R GGEEF+    G   ++       LR+ IE+ ++   + +  P  H      
Sbjct: 301 GKAR-VYRYGGEEFSIIYKGKLAKDVLPFIEALRQDIESYELVIRDTNQRPKSHAEGAKK 359

Query: 218 -----------ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
                      ITIS G+ +   ++ PI   +  AD ALY AK++GRN
Sbjct: 360 RSRKSNSDIVTITISIGVCDSELYRHPIEA-LKAADGALYKAKQAGRN 406


>gi|119896426|ref|YP_931639.1| putative response regulator [Azoarcus sp. BH72]
 gi|119668839|emb|CAL92752.1| putative response regulator [Azoarcus sp. BH72]
          Length = 477

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 78/169 (46%), Gaps = 12/169 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  LS  D L+GL N   F       I+        L+    D+D+FK  ND++GH  GD
Sbjct: 293 VEALSVTDPLTGLANRRQFQQVLEGEIARASRGARALAFCLVDVDHFKAYNDHYGHAAGD 352

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           KV+  L   L   F     F  R+GGEEFA         EAA  A +L  ++E   I  +
Sbjct: 353 KVLQRLGRLLTDTFRRSTDFTFRIGGEEFALLFPVRDSAEAATTAAELVALVEAQAIVHA 412

Query: 212 SG-PSIHITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G P  H+TIS G   I+ R     +  I   AD  LY AK  GRNR V
Sbjct: 413 FGSPGPHLTISMGVRVISPREQPLDVDRIFQEADALLYQAKHEGRNRYV 461


>gi|120402205|ref|YP_952034.1| diguanylate cyclase [Mycobacterium vanbaalenii PYR-1]
 gi|119955023|gb|ABM12028.1| diguanylate cyclase [Mycobacterium vanbaalenii PYR-1]
          Length = 650

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 79/186 (42%), Gaps = 33/186 (17%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           ++ ++  D L+GL N      S            + L+ +F D+D+FK  ND+ GH  GD
Sbjct: 447 LTDMANTDELTGLPNRRGLTRSASEIWSRALELEQPLTALFVDVDHFKAYNDHHGHQAGD 506

Query: 153 -------KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
                   V+A L+D    V        R GGEEFA    G   ++    A  L   I  
Sbjct: 507 VCLRDVADVLAHLADPRTCV------AARYGGEEFAVVLAGC--EDPYTFATGLSSAIRA 558

Query: 206 SQINISSGPSIHITISAGIAERCHKE-----------PISTIIYRADQALYVAKKSGRNR 254
             I     P   +T+S G+A    ++            +S +++RAD+ALY AK  GRN 
Sbjct: 559 LGIGHPVSPCGVVTVSIGVATVSPRDEARFGGADPEAAVSELLHRADKALYTAKSQGRNA 618

Query: 255 VVCFSD 260
           +    D
Sbjct: 619 ISVAHD 624


>gi|312879216|ref|ZP_07739016.1| response regulator receiver modulated diguanylate cyclase
           [Aminomonas paucivorans DSM 12260]
 gi|310782507|gb|EFQ22905.1| response regulator receiver modulated diguanylate cyclase
           [Aminomonas paucivorans DSM 12260]
          Length = 466

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 16/176 (9%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQIN 143
           E  +   R+ Q +  D L+GL N   F++ LG           + L+ +F D+D FK +N
Sbjct: 294 ETALMRERLKQEALTDYLTGLYNRRGFMT-LGEDRLQLAARLGQTLACLFLDLDGFKHVN 352

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+V+   ++ L   F     +GR+GG+EFA   L     +   L   L   +
Sbjct: 353 DTLGHDEGDEVLRDTAEALKETFRASDLIGRIGGDEFAVLLLCDESDQVETLRTRLETAL 412

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALY---VAKKSGRNR 254
           E   +N  +     + +S G+A +   E +S   ++  AD+ +Y   +A+K    R
Sbjct: 413 ET--VNQRTSRPYRLALSMGLATKAPGEVLSLEDLMDTADKRMYKDKIARKGSEAR 466


>gi|293604846|ref|ZP_06687243.1| sensory box protein [Achromobacter piechaudii ATCC 43553]
 gi|292816674|gb|EFF75758.1| sensory box protein [Achromobacter piechaudii ATCC 43553]
          Length = 665

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 89/181 (49%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D L+ L N  A  + L +  E     +  ++F D+D FK
Sbjct: 219 SGTDITEERQAQERLRVLANTDMLTNLPNRHAITARLKAALEVGQEGRGGVLFLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND++GH  GD+++  +S  +         + RLGG+EF        + +A  L     
Sbjct: 279 RINDHYGHGFGDRLLKAVSVAISTCLSPGQTLARLGGDEFIVL---QEQAQAWELEATAE 335

Query: 201 KIIENSQINISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +IIE  +     G   ++ + S GIA    H   + +++  AD A+YVAK++GR+    F
Sbjct: 336 RIIERLREPFRQGLIEVYTSCSIGIAMYPDHGADLDSVVRSADIAMYVAKEAGRHTYRVF 395

Query: 259 S 259
            
Sbjct: 396 Q 396


>gi|260771062|ref|ZP_05879990.1| GGDEF domain protein [Vibrio furnissii CIP 102972]
 gi|260613951|gb|EEX39142.1| GGDEF domain protein [Vibrio furnissii CIP 102972]
          Length = 489

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 86/169 (50%), Gaps = 15/169 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS--IVFFDIDYFKQINDNFGHPVGDKVI 155
           N + + S ID L+GL N  A  + L S  E  +  +   DIDYFK IND +GH  GD V+
Sbjct: 321 NTLRKESLIDGLTGLNNRRALDNDLPSLIEDGATLVAMLDIDYFKSINDTYGHQTGDTVL 380

Query: 156 ---AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
              A +++  +    T ++  R GGEEF    +  +  +A  +   LR  I  +Q     
Sbjct: 381 KTFAAIAEAQLPPQSTRIY--RYGGEEFVIVFVRVTPSQALEMLEQLRLSI--AQYQWHQ 436

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           GP   +T SAG+A     + I+    R    LY AK+SGRNR++ + D+
Sbjct: 437 GPH-QVTFSAGLASCADADAIALADAR----LYEAKRSGRNRII-YDDV 479


>gi|251797990|ref|YP_003012721.1| diguanylate cyclase [Paenibacillus sp. JDR-2]
 gi|247545616|gb|ACT02635.1| diguanylate cyclase [Paenibacillus sp. JDR-2]
          Length = 392

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 17/179 (9%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDN 145
           +++ L ++Y    Q S  D L+GL N   F S    +    + L+++F DID FK++ND 
Sbjct: 221 VIERLMMTY----QSSITDGLTGLYNRRHFTSKAEQILQRQKGLAVIFCDIDNFKKLNDT 276

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH   D V+  +++ +          GR GGEE  A  + +   +   +A  +R  +E 
Sbjct: 277 QGHHKADGVLKQVAEIMKEESAGIGAAGRYGGEELLAC-ISTDRVKPDRVAESIRSRVEK 335

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             I         +T+S G++     + +  +I  AD+A+Y +K +G+N+V  FS + ++
Sbjct: 336 ETI---------VTVSVGVSTSKDGKEVVQLIKLADEAMYHSKTTGKNKVSLFSSLPSS 385


>gi|163850400|ref|YP_001638443.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|218528960|ref|YP_002419776.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium chloromethanicum CM4]
 gi|254559654|ref|YP_003066749.1| response regulator [Methylobacterium extorquens DM4]
 gi|163662005|gb|ABY29372.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|218521263|gb|ACK81848.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium chloromethanicum CM4]
 gi|254266932|emb|CAX22731.1| response regulator (CheY-like); diguanylate cyclase (GGDEF) and
           response regulator receiver domains [Methylobacterium
           extorquens DM4]
          Length = 457

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 76/164 (46%), Gaps = 11/164 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG------SYNEK-LSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL N       LG      +  EK L+ +  DID FK IND +GH  GD+V
Sbjct: 290 ELAITDDLTGLHNRRYLDRHLGPVFGEAALQEKGLACLLLDIDRFKLINDTYGHEAGDEV 349

Query: 155 IAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +   +++ +  +  PM  + R GGEE      G+   +A  +A  +R  IE +   I  G
Sbjct: 350 LRAFAER-IRQYVRPMDILARYGGEEIVMVVPGAELPDARAIAERIRHRIEATPFAIDGG 408

Query: 214 PS--IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                          R      S ++ RAD ALY AK  GRNRV
Sbjct: 409 TRDIGVTVSVGVSVRRATDTGPSDLLKRADTALYRAKSFGRNRV 452


>gi|153000356|ref|YP_001366037.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|151364974|gb|ABS07974.1| diguanylate cyclase [Shewanella baltica OS185]
          Length = 341

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 100/214 (46%), Gaps = 12/214 (5%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILK---ELFISYNRISQLSR---IDCLSGL 112
           + +E +L    SLV  S  I     + +G + K   E+     ++ Q  +    D L+G 
Sbjct: 128 FSVEQVLDLVRSLVKESDNIRSSTEFFTGQLQKAQTEIDALKKKLEQTEKDVLYDALTGC 187

Query: 113 LNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N  AF S     L        ++  DID+FK  ND +GH +GD+V+  ++ +L      
Sbjct: 188 FNRRAFDSDFAGMLAQAPLGTCLILADIDHFKVFNDTYGHQLGDQVLRAVAKRLQESCRD 247

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
            + + R GGEEF      S  + A  LA  +R+ +E   +          +I+ S G+A+
Sbjct: 248 GVKLYRFGGEEFVIIVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDERINNISASFGVAQ 307

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              K+    +I  AD+ LY AK+ GRNRV+  S+
Sbjct: 308 WQEKQTGMQLIAAADKLLYDAKRLGRNRVLPISN 341


>gi|82543281|ref|YP_407228.1| hypothetical protein SBO_0726 [Shigella boydii Sb227]
 gi|81244692|gb|ABB65400.1| conserved hypothetical protein [Shigella boydii Sb227]
          Length = 442

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 21/177 (11%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-IVFFDIDYFKQI 142
           + S + +K+L+  YN     + +D L+  +   +F   L +  EK S +  FD+D FK I
Sbjct: 279 FFSAADVKKLYSMYNS----AFLDDLTKAMGRKSFDEDLKALPEKGSYLCLFDVDKFKNI 334

Query: 143 NDNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           ND FGH +GD    KV+  L  Q+ V  G    + R GG+EFA    G + +E   L + 
Sbjct: 335 NDTFGHLLGDEVLMKVVKILKSQIPVDKGK---IYRFGGDEFAVIYTGGTLEE---LLSI 388

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           L++I+ + Q+      SI+++ S G+A       +  +   AD+ LY +KK+GR ++
Sbjct: 389 LKEIV-HFQVG-----SINLSTSIGVAHSNECTTVERLKMLADERLYKSKKNGRAQI 439


>gi|226945001|ref|YP_002800074.1| Response regulator [Azotobacter vinelandii DJ]
 gi|226719928|gb|ACO79099.1| Response regulator [Azotobacter vinelandii DJ]
          Length = 310

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKL----SIVFFDIDYFKQIND 144
            L   +  + ++++ D L+G+ N     AF+     + E+L    +++  D+D+FK  ND
Sbjct: 132 RLARQHELLERMAQCDGLTGIANWRAFDAFLERQWRHQERLRRPLAVLMMDVDHFKAYND 191

Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GH  GD+ +  ++  +       P  V R GGEEFA          A  +   +R+ +
Sbjct: 192 ALGHLNGDRCLRQIARAVADARLRGPGLVARFGGEEFACVLPDIDAGAALHVGERMREAV 251

Query: 204 ENSQIN---ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E  +I     S+ P + ++I    A          ++  AD+ALY AK++GR+RVV
Sbjct: 252 EALRIPHPASSTAPRVTLSIGGATAIPGPGLDAGALLEMADEALYAAKRAGRDRVV 307


>gi|332995523|gb|AEF05578.1| diguanylate cyclase [Alteromonas sp. SN2]
          Length = 362

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 98/215 (45%), Gaps = 13/215 (6%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           F+  + + P YG + +++   S V+ S+ I     Y    I+  L  +  +++ LSR D 
Sbjct: 135 FIGLMAIAPVYG-DRVMIST-SFVVGSLFICAYAKYRLDRIVILLKSTNKKLNTLSREDP 192

Query: 109 LSGLLNHSAFIS------SLGS-YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ LLN  A +       SL    N   ++   D+D FK+ ND FGH  GD  I   +D 
Sbjct: 193 LTNLLNRRALMKEGERLLSLSKRQNLSFAVFMLDLDDFKKYNDAFGHQQGDDAIVAQADV 252

Query: 162 LVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---SSGPSIH 217
           +  VF      +GR GGEEF     G S ++       +    +   +     +S  ++ 
Sbjct: 253 MRAVFQRQTDILGRYGGEEFMVIVSGVSARQVEQSCQQILDTWDEKALPHAPNASAKTVS 312

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            +I A +     K+ +  +I +AD  LY AK +G+
Sbjct: 313 CSIGAVVVNNVKKQTLEGLINQADNELYQAKAAGK 347


>gi|331652330|ref|ZP_08353349.1| protein gmr [Escherichia coli M718]
 gi|331050608|gb|EGI22666.1| protein gmr [Escherichia coli M718]
          Length = 661

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMAS--- 335

Query: 201 KIIENSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 336 RILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 S 259
           +
Sbjct: 396 T 396


>gi|293414618|ref|ZP_06657267.1| hypothetical protein ECDG_01181 [Escherichia coli B185]
 gi|291434676|gb|EFF07649.1| hypothetical protein ECDG_01181 [Escherichia coli B185]
          Length = 661

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMAS--- 335

Query: 201 KIIENSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 336 RILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 S 259
           +
Sbjct: 396 T 396


>gi|293433647|ref|ZP_06662075.1| gmr [Escherichia coli B088]
 gi|291324466|gb|EFE63888.1| gmr [Escherichia coli B088]
          Length = 661

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMAS--- 335

Query: 201 KIIENSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 336 RILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 S 259
           +
Sbjct: 396 T 396


>gi|289643506|ref|ZP_06475624.1| diguanylate cyclase with PAS/PAC sensor [Frankia symbiont of Datisca
            glomerata]
 gi|289506690|gb|EFD27671.1| diguanylate cyclase with PAS/PAC sensor [Frankia symbiont of Datisca
            glomerata]
          Length = 1268

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 6/162 (3%)

Query: 98   NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGD 152
            + +S  +  D L+GL N S F   L     +      +++F D+D FK +ND +GH  GD
Sbjct: 1084 DELSYQASHDALTGLPNRSVFARRLDEIAAQRPTPAFAVLFIDLDRFKSVNDTYGHNAGD 1143

Query: 153  KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            +V+  +  +L         V RLGG+EFA     +    A  LA+ L   I    +    
Sbjct: 1144 EVLRIIGARLREAGTERDAVCRLGGDEFAVILGDADSGRARDLADQLLGAIRRPIVVGGR 1203

Query: 213  GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
              ++  TI   ++E     P   ++  AD A+Y AK++GR R
Sbjct: 1204 SLTVDATIGVALSES-QDAPPGAVVRNADLAMYRAKEAGRAR 1244



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 86/172 (50%), Gaps = 24/172 (13%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +R+S  +  D L+GL N  AF+  L        +      ++F D+D+FK +ND +GH  
Sbjct: 403 DRLSYQASHDLLTGLPNRVAFMGELEKAAGAVRAGGAPFVVLFVDLDHFKPVNDGYGHDA 462

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  ++++LV          RLGG+EF     G+ E  AA  A+   +IIE+ +  I
Sbjct: 463 GDVVLRAVAERLVQTLRDGDLAVRLGGDEFGVLLRGADEAAAAAAAD---RIIESVRAPI 519

Query: 211 SSGPS-IHITISAGIAERCHKEPISTIIYR-------ADQALYVAKKSGRNR 254
             G S + +  S GIA      P +  + R       AD A+Y AK++G+ R
Sbjct: 520 MVGASVVQVDASIGIA------PSTLDVARPEHFLCVADNAMYEAKRAGKGR 565


>gi|260770120|ref|ZP_05879053.1| GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260615458|gb|EEX40644.1| GGDEF family protein [Vibrio furnissii CIP 102972]
          Length = 407

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 13/198 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI---DCLSGLLNHSAF--I 119
           +V+N  LV     + L+ G I+  +   L+       +L++I   D LSGL N      +
Sbjct: 215 VVDNHELVPPYFYLILMFGSITAGVSLYLYRIRKDKQELTKITFTDELSGLHNRHYLKKV 274

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
           S     + +  +   DID+FK +ND +GH +GD+VI  ++  +        +  R GGEE
Sbjct: 275 SRQLKAHHRYHLCILDIDHFKLVNDKYGHDIGDQVIKRVASVIKSRIRLSDYAFRFGGEE 334

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F       S ++A  + + +R   E+  + + +     +TIS G+      E +   I  
Sbjct: 335 FVVVIKTDSAEQAVRIFDRIR---EDVALYVQAPK---VTISGGVWPVT--ESVDEAIKH 386

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD+ LY+AK+ GRN ++ 
Sbjct: 387 ADRLLYMAKEQGRNTILS 404


>gi|222054042|ref|YP_002536404.1| diguanylate cyclase [Geobacter sp. FRC-32]
 gi|221563331|gb|ACM19303.1| diguanylate cyclase [Geobacter sp. FRC-32]
          Length = 412

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 78/171 (45%), Gaps = 25/171 (14%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+GL +  A    + S   + +I   D+D+FK  ND  GH VGD+V+  ++ ++  V 
Sbjct: 243 DDLTGLPSRRALNEQMLSMGRQYTIAMLDVDHFKIFNDTHGHDVGDQVLKMVAKKIGAVK 302

Query: 167 --GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS------------ 212
             G P    R GGEEF          +A     D+R  I   +++I S            
Sbjct: 303 GGGRPF---RYGGEEFTIVFPRRKMGDAIPFLEDVRSAISAYELSIRSKDRPKKAEEGKK 359

Query: 213 -------GPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRV 255
                    ++ +TIS G+AE      +   +I  AD+ALY AK  GRN+V
Sbjct: 360 KRNAGHGDKTVSVTISIGVAESSDSLRLPDDVIKAADKALYRAKSKGRNQV 410


>gi|213025743|ref|ZP_03340190.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 157

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 15/168 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           S+L  L   YNR    +R+D L    +H  ++            +  DID+FK  ND++G
Sbjct: 2   SMLDPLTGLYNRRGLQNRLDTLQAPGSHEHYV------------LLLDIDHFKAYNDHYG 49

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD+ +  +S  +     +   V R GGEEF      +  Q+A   A  +R+ + + +
Sbjct: 50  HMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLK 109

Query: 208 IN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           I    +   + ++T+S GIA    +  I   I +AD+ALY AK  GRN
Sbjct: 110 IPHMFNESVATNVTVSIGIAPLTDRN-IGDAIEKADKALYEAKHLGRN 156


>gi|330983137|gb|EGH81240.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 217

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 9/146 (6%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR 99
             V+    + +    L P   L   + +  + + + +T  + +G++S  +  +L+   N 
Sbjct: 73  GAVVQALGVLISLAALDPVVNLHGNMAQIYACLPVLVTYPIFIGWLSHQVTLKLWEHRNI 132

Query: 100 ISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           + ++SR D L+GLLNH A        + SS  +Y E + I   DID+FK IND +GH +G
Sbjct: 133 LRKVSRTDSLTGLLNHGAWKDLLDLEYASSQNTYQECV-IALIDIDHFKVINDTYGHLMG 191

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGG 177
           D V+  +S+ L         +GR GG
Sbjct: 192 DTVLQSISEALTENLRDSDLIGRCGG 217


>gi|309388378|gb|ADO76258.1| diguanylate cyclase [Halanaerobium praevalens DSM 2228]
          Length = 495

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 17/154 (11%)

Query: 107 DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F S+     E       KL I+F DID FK INDN+GH +GD+V+  ++
Sbjct: 342 DKLTGLANRKLFFSNFERLKEEADKSETKLGILFIDIDKFKMINDNYGHNIGDQVLKKIA 401

Query: 160 DQLVVVFGTPMFVGRLGGEEF-AAAALGSSEQEAAILANDLRKIIEN----SQINISSGP 214
            +L           R+GG+EF AA A  +SE E   +   L   +EN     +I I    
Sbjct: 402 KRLENNLKENDITARIGGDEFLAALANLNSETEIIQITKRLIAELENPIVIREIEIPMSI 461

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           S+ I+I    A     + + ++I +AD  +Y AK
Sbjct: 462 SLGISIYPDDA-----QGLESLIKKADSKMYEAK 490


>gi|297516107|ref|ZP_06934493.1| RNase II stability modulator [Escherichia coli OP50]
          Length = 644

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 202 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINHADNNKVGVVYLDLDNFK 261

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 262 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMAS--- 318

Query: 201 KIIENSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 319 RILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 378

Query: 259 S 259
           +
Sbjct: 379 T 379


>gi|295106718|emb|CBL04261.1| diguanylate cyclase (GGDEF) domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 500

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 74/164 (45%), Gaps = 9/164 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           + S  D L+   N S     L  Y      +   + +  D+DYFK +ND FGH VGD ++
Sbjct: 318 EQSSTDALTRAYNRSYLQGRLREYCASKQPDVSYACLLADVDYFKSVNDKFGHLVGDNLL 377

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGP 214
               D    +F T   V RLGG+EF        +   A+  ++   +I+    +    G 
Sbjct: 378 TAFVDTARTLFRTSDIVARLGGDEFMVFMRDVYDPRVAMERSE--ALIDAFRTMAADRGF 435

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +++S G+       P S +  RAD ALY AK  G+NR V +
Sbjct: 436 PRDVSLSVGVVVESEPHPFSELYRRADIALYRAKAEGKNRAVPY 479


>gi|297569508|ref|YP_003690852.1| response regulator receiver modulated diguanylate cyclase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925423|gb|ADH86233.1| response regulator receiver modulated diguanylate cyclase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 316

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 23/184 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ QLS  D L+GL N   F       +      N  L ++  D+D FK  ND FGH  
Sbjct: 138 RKLEQLSMRDALTGLFNRRGFEVKLEEEVPRAHRQNYPLYVIIIDMDKFKTYNDEFGHQA 197

Query: 151 GDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD+ +  +   L+        +  R GG+EFA     + + +A  +A   ++I+E  + +
Sbjct: 198 GDRALQAIGRLLLRNTRDNVDWCCRPGGDEFAIIIPYTDDHQAMAVA---QRILEQYRQH 254

Query: 210 ISSGPSIHITISAGIAERCHKEP-------ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
               P    T+S G+A   H+ P       I  ++ RADQA+Y +K++G +R+ C     
Sbjct: 255 ----PFGETTLSIGLAS-FHRHPQYTMGEDIEHLLVRADQAMYRSKQAGGDRISCDPSFT 309

Query: 263 NNTC 266
              C
Sbjct: 310 TANC 313


>gi|291613862|ref|YP_003524019.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291583974|gb|ADE11632.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 923

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 18/168 (10%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N +     LG           + S++F D+D FK IND+ GH VGD+++
Sbjct: 494 LAYYDVLTGLPNRTLLRDRLGQMIAVAHRDKHQFSLIFLDLDRFKYINDSMGHSVGDRLL 553

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINI 210
             ++ ++         V RLGG+EF      + E  A+++A  L   +      + Q+ I
Sbjct: 554 QSVALRIQDCVREGDTVARLGGDEFIVLLREAGESAASVVAQKLLIALATPYDLDGQV-I 612

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S+  SI I+I    A+        T+I  AD A+Y AK+ GRN    F
Sbjct: 613 STQASIGISIYPDQAQDA-----DTLIKNADMAMYRAKEEGRNNFQFF 655


>gi|153212456|ref|ZP_01948225.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|254285171|ref|ZP_04960137.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|124116493|gb|EAY35313.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|150425174|gb|EDN16951.1| GGDEF family protein [Vibrio cholerae AM-19226]
          Length = 412

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 23/168 (13%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           D L+ +    A    L     K ++   D+D+FK+ ND +GH  GD V+  ++ +L  + 
Sbjct: 241 DPLTQIPGRQALDQDLKHIGRKFTLAMLDVDHFKKFNDTYGHDTGDDVLKLVASRLREIN 300

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSIH------ 217
           G    V R GGEEF+    G   ++       LR+ IE+ ++   + +  P  H      
Sbjct: 301 GKAR-VYRYGGEEFSIIYKGKLAKDVLPFIEALRQDIESYELVIRDTNQRPKSHAEGAKK 359

Query: 218 -----------ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
                      ITIS G+ +   ++ PI   +  AD ALY AK++GRN
Sbjct: 360 RSRKSNSDIVTITISIGVCDSELYRHPIEA-LKAADGALYKAKQAGRN 406


>gi|262396892|ref|YP_003288745.1| GGDEF domain protein [Vibrio sp. Ex25]
 gi|262340486|gb|ACY54280.1| GGDEF domain protein [Vibrio sp. Ex25]
          Length = 637

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 5/137 (3%)

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
           S +   ++   DID+FK  ND +GH +GDK++  ++        +   + R GGEEF   
Sbjct: 497 SPDRTFALAVLDIDHFKTFNDEYGHDIGDKMLMHIARLFNESTRSGDLLIRWGGEEFVLL 556

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH----KEPISTIIYR 239
              +  ++ A   + LR I+E + + + S  S++ TIS G  +R      ++      + 
Sbjct: 557 FEVNRTEDCAKFLDRLRYIVEKTPLVVDS-KSLNATISLGAVDRLSVKTIQQEWDQWFFF 615

Query: 240 ADQALYVAKKSGRNRVV 256
           ADQALY AK++GRNR V
Sbjct: 616 ADQALYDAKQAGRNRFV 632


>gi|26990374|ref|NP_745799.1| GGDEF domain-containing protein [Pseudomonas putida KT2440]
 gi|24985335|gb|AAN69263.1|AE016561_1 GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 433

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 101/201 (50%), Gaps = 11/201 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           L+  +SLV  ++ I L+   ++G++    +    RI++L+  D L+ L N  A     G 
Sbjct: 228 LIIQVSLVEGAMAIMLIALSMTGTVR---YRREERIARLAARDPLTALYNRRALEVRAGH 284

Query: 125 YNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           + + +S      ++  DID FK +ND  GH  GD+++  LS+ +           RLGG+
Sbjct: 285 FFKDVSPAQPGALLLIDIDNFKLVNDLHGHIAGDRLLIALSEMIRTALPERSLAARLGGD 344

Query: 179 EFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII 237
           EF     G+S +    L + LR+  +  +   + +  ++ ++I A + ++     ++ +I
Sbjct: 345 EFVILLSGASSERVMELGSGLREQFQQYADKTVPTPQAVTLSIGANVFDQPPAS-LAALI 403

Query: 238 YRADQALYVAKKSGRNRVVCF 258
            + D ALY +K+ GR+ +  F
Sbjct: 404 EQGDVALYQSKRGGRDSIRFF 424


>gi|325528405|gb|EGD05542.1| putative diguanylate cyclase [Burkholderia sp. TJI49]
          Length = 521

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 95/208 (45%), Gaps = 17/208 (8%)

Query: 68  NLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           + ++ I S    L LG+++ S+L     ++   +   +  L+R   L+GL N      +L
Sbjct: 303 DRAIPIGSAMAVLALGFVALSLLLDVQLRKRHRAETELQALARTGGLTGLDNRRMLDVTL 362

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGR 174
                +       LS++F D+D+FK+ ND  GH  GD  +A +   +V     P  +  R
Sbjct: 363 AREWRRAARSQHALSLLFVDVDHFKRYNDTQGHQAGDDALAAVGHCIVGCLRRPADYAAR 422

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--- 231
            GGEEF           A  +A  +R  I +  I   +     +T S G+   C+ E   
Sbjct: 423 YGGEEFVVILPDIDTGGAVAIAETIRTSILDLGIRHDASSFGCLTASIGVTT-CYPERDD 481

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
            I   +  AD ALY AK++GRNRVV  S
Sbjct: 482 SIQAALKLADDALYRAKEAGRNRVVVQS 509


>gi|293604299|ref|ZP_06686706.1| diguanylate kinase [Achromobacter piechaudii ATCC 43553]
 gi|292817176|gb|EFF76250.1| diguanylate kinase [Achromobacter piechaudii ATCC 43553]
          Length = 473

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 7/158 (4%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ +LN     S +G         + + S++  DID+FK IND  GH  GD ++   +
Sbjct: 315 DPLTNVLNRRFLPSVIGREIAISSRQHSRFSVLLLDIDHFKAINDEHGHSGGDHILRQFA 374

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + +     +  FV R GGEEF    + + ++ A   A  L   I      I    +  IT
Sbjct: 375 EVVHQSCRSSDFVFRYGGEEFLVVLVDTGQEAALAAAQKLGAEIRRHDFTIPEVGARRIT 434

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            S G+A        + +I RAD+ALY AK +GR+R V 
Sbjct: 435 ASIGVATFDGHPDYAYLIDRADKALYQAKLAGRDRCVA 472


>gi|295688345|ref|YP_003592038.1| diguanylate cyclase/phosphodiesterase [Caulobacter segnis ATCC
           21756]
 gi|295430248|gb|ADG09420.1| diguanylate cyclase/phosphodiesterase [Caulobacter segnis ATCC
           21756]
          Length = 737

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 81/183 (44%), Gaps = 14/183 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           I + L  S  R   L+  D L+GL N   F       I SL      ++++  D+D FK 
Sbjct: 290 IAEGLITSEARAKHLALHDGLTGLPNRLLFEERLRQAIDSLDRKRRPMAVLAIDLDRFKA 349

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH  GD++I  + ++L  V      V RLGG+EF   A       AAI+A  L K
Sbjct: 350 VNDTYGHAAGDELIRKVGERLASVCRGGETVARLGGDEFGVVASDLDANGAAIVAERLLK 409

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVVC 257
            +    + +S G  +H    +        E      +    RAD ALY AK  GR R   
Sbjct: 410 AL-CGPMEMSFG--VHFVSGSVGVVLVGSEEAHIGAAEAARRADVALYRAKSEGRGRYCF 466

Query: 258 FSD 260
           F D
Sbjct: 467 FED 469


>gi|264678990|ref|YP_003278897.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262209503|gb|ACY33601.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 286

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 9/157 (5%)

Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ +LN   F       +     + LSIV  D+D+FK++NDN+GH  GD V+  +++ 
Sbjct: 123 DMLTRVLNRRGFWELADPLARDRKAQPLSIVVADLDHFKRVNDNWGHEYGDGVLKAVAEV 182

Query: 162 LVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
           +   V GT + V R GGEEF      +  + A  +A  +R         +  G    +T+
Sbjct: 183 IQASVRGTDL-VARFGGEEFVLLLTHADIETAQRVAQRIRAGAVEIIAPLPDGQ--RVTL 239

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S G+        +   + RADQ LY AK+ GR++VV 
Sbjct: 240 SMGVVVSPFGSDLREALMRADQQLYKAKELGRDQVVV 276


>gi|238798074|ref|ZP_04641562.1| hypothetical protein ymoll0001_17400 [Yersinia mollaretii ATCC
           43969]
 gi|238718054|gb|EEQ09882.1| hypothetical protein ymoll0001_17400 [Yersinia mollaretii ATCC
           43969]
          Length = 467

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 83/177 (46%), Gaps = 11/177 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           + EL  S + +  LS+ D L+G+ N   F        +K       LS++  D D FK  
Sbjct: 285 ITELKQSESILKALSQTDVLTGVANRRHFDDLYQRIWQKNRIEGGTLSVLMIDFDNFKSF 344

Query: 143 NDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH +GD  +  + + L   + G    + R GGEEF      S+  +A  +A  +R 
Sbjct: 345 NDLYGHAMGDVCLKSIVETLSKSIRGGSDILARYGGEEFIVLLAPSTPTDAKTIAERMRH 404

Query: 202 IIENSQINISSGPSIHITISAGIAE-RCHKEPIST--IIYRADQALYVAKKSGRNRV 255
            IE   I     P   +TIS G A      E I+   +   AD+ALY AK SG+NRV
Sbjct: 405 SIEELDIPHGMSPHGRVTISIGAASISAPDEHIAATDLSGAADKALYRAKTSGKNRV 461


>gi|238755577|ref|ZP_04616914.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia ruckeri ATCC 29473]
 gi|238706177|gb|EEP98557.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia ruckeri ATCC 29473]
          Length = 669

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLN----HSAFISSLGSYNEK-LSIVFFDIDYFK 140
           SG+ + +   +  R+  L+  D ++GL N    H    S++ +  E  + I++ D+D FK
Sbjct: 218 SGTDITKERRAQERLRVLANTDMITGLPNRHAIHERINSAIQTRGESSVGIIYLDLDNFK 277

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           ++ND++GH  GD+++  +S  ++        + RLGG+EF      +S    E+ A  + 
Sbjct: 278 KVNDHYGHMFGDRLLKDVSLSILSCLKENEMLARLGGDEFIVLIENTSIIELEETAQRIL 337

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +R       I + +G SI I +        H E +  II  AD A+Y AK+ G+    
Sbjct: 338 DQMRAPFRIGLIEVYTGCSIGIALCP-----QHGETLENIIRSADTAMYTAKELGKRTYS 392

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 393 IFSQEMNK 400


>gi|218887848|ref|YP_002437169.1| diguanylate cyclase with hemerythrin-like metal-binding domain
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758802|gb|ACL09701.1| diguanylate cyclase with hemerythrin-like metal-binding domain
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 631

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 79/171 (46%), Gaps = 11/171 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q +  D L+GL N S    +L +   +       LS++  D+D FK  ND  GH  GD  
Sbjct: 308 QKAMRDPLTGLFNRSRLDCALETELRRAQRSEDVLSLLMVDVDNFKSYNDIHGHVAGDTC 367

Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISS 212
           +  ++  L  VV   P  V R GGEEFA    G++E  AA +A  +R  + E   ++  +
Sbjct: 368 LRAVAHTLRTVVHRAPDMVARYGGEEFACVLPGTAEAGAAQMAERIRCAVAELCIVHPGN 427

Query: 213 GPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            P+ H  +++                I  AD+ALY AK  GRN V    DI
Sbjct: 428 TPAGHVTVSVGVTTVRGGRNATPDQAIDMADRALYRAKSKGRNTVATAQDI 478


>gi|217979950|ref|YP_002364097.1| diguanylate cyclase [Methylocella silvestris BL2]
 gi|217505326|gb|ACK52735.1| diguanylate cyclase [Methylocella silvestris BL2]
          Length = 482

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 97/194 (50%), Gaps = 22/194 (11%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
           VE   +V+ ++ +   +G ++  + +EL     R   L   D L+ +LN   F + +  Y
Sbjct: 275 VETPIIVLAALAMIAWMGRLTNKLEREL-----RYQSLK--DQLTNVLNRRGFFT-VADY 326

Query: 126 NEK--------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
             K        L++ +FD+D  K++ND+ GH  G ++I   +D LV  F     +GR+GG
Sbjct: 327 AMKNAIRLKTGLTLFYFDLDGLKKVNDSLGHKAGSELITRFADVLVATFRKTDVIGRIGG 386

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--T 235
           +EF   A  SS    A+LA  +  I+    +   S P + I+ S+G AE      ++   
Sbjct: 387 DEFVVLASDSSGTAEAMLAR-MAAIVAARAM---SDPLLEISYSSGYAETSSPATVAIDD 442

Query: 236 IIYRADQALYVAKK 249
           +I++AD+ +Y  K+
Sbjct: 443 LIHQADKMMYERKQ 456


>gi|188990827|ref|YP_001902837.1| Putative signal transduction protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732587|emb|CAP50781.1| Putative signal transduction protein [Xanthomonas campestris pv.
           campestris]
          Length = 508

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 12/178 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           L+ +  +  R+S    +D L+G+ N  AF   L             LS++  D+D+FK  
Sbjct: 329 LRRMHRNEARLSSEVWVDALTGIANRRAFDHRLSEALQDAVHTQAPLSVLMIDVDHFKLY 388

Query: 143 NDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR- 200
           ND +GH  GD  +  ++  +      +     R GGEEF      +    A  LA+ +R 
Sbjct: 389 NDTYGHVNGDACLRLIAGTIAGCARRSDDIAARYGGEEFGMILPHTDVAGALRLADAIRT 448

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
            + E   ++++S  S H+T+S G A     + P++   I+  AD ALY AK+ GR+R 
Sbjct: 449 AVAELGLMHLTSPTSAHVTVSVGAATFEPGETPLTPDAIVRDADGALYRAKQGGRDRT 506


>gi|87199424|ref|YP_496681.1| diguanylate cyclase/phosphodiesterase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135105|gb|ABD25847.1| diguanylate cyclase/phosphodiesterase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 567

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 19/174 (10%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+G LN  +        +S+  +   ++ ++  D+D FK+ ND  GH  GD V
Sbjct: 118 KLAHTDPLTGCLNRRSMGPAVEQMVSTARTSGHEVVVMMMDLDNFKRSNDVHGHQAGDAV 177

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS--- 211
           +   +D++  +      + RLGG+EFA AA+   +   +I    LR    N  + +    
Sbjct: 178 LLHTADRIRAILPAGSIIARLGGDEFACAAIFDPDHVESIDRLILRM---NEAVAMPVRV 234

Query: 212 SGPSIHITISAGI----AERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFS 259
            G  + +T S G+    A      P    T+++RAD A+Y AKK+GRNR   F 
Sbjct: 235 DGLMLEVTASIGLAATSAADAGAPPALADTLLHRADLAMYQAKKAGRNRYCWFE 288


>gi|90022222|ref|YP_528049.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
 gi|89951822|gb|ABD81837.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
          Length = 722

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 17/165 (10%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +R+  L+  D L+ L N +     L       S N+K++++  D+D FK+IND  GH  G
Sbjct: 291 DRMRYLANHDTLTSLPNRNLLYKELERVLSNRSQNQKVALLLVDLDRFKEINDTLGHQAG 350

Query: 152 DKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAIL-----ANDLRKIIEN 205
           DKV+  L  +L V  G TP  V RLGG+EFA        ++ A++     A+ + +  + 
Sbjct: 351 DKVLKQLGPRLEVELGDTPGMVARLGGDEFAILLSNIRNRQHAVVTAHRFADAIAERFDL 410

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
              +     SI + I    A     E +ST++  AD A+Y AK +
Sbjct: 411 DTFSTELQSSIGVVICPDQA-----EDVSTLMRYADVAMYHAKNN 450


>gi|170691222|ref|ZP_02882387.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           graminis C4D1M]
 gi|170143427|gb|EDT11590.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           graminis C4D1M]
          Length = 975

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 15/164 (9%)

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N    +  LG+         ++L ++F D+D FK +ND+ GH  GD+++   +
Sbjct: 542 DALTGLPNRRYLLERLGAEWTRHRDAGQQLVVMFLDLDRFKVVNDSLGHHFGDQLLVSAA 601

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI- 218
            +L         + RLGG+EFA  +  +S ++A  LA    +I+    +  S G  +   
Sbjct: 602 TRLRDCLADKCMLARLGGDEFAILSAEASVEDAIELA---ERILSAFDVPFSIGDHVVFS 658

Query: 219 TISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + S GI    +  H EP + ++  AD A+Y AK  GR+  V F+
Sbjct: 659 SCSIGIVSADDDFHGEP-ADLLRDADTAMYRAKNGGRDSYVVFN 701


>gi|74317287|ref|YP_315027.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056782|gb|AAZ97222.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) and Response Regulator
           Receiver modulation [Thiobacillus denitrificans ATCC
           25259]
          Length = 705

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 94/191 (49%), Gaps = 23/191 (12%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           + E   +  +I +L+  D L+ L N  +F+  L           +KL+++F D+D FK +
Sbjct: 245 ITERKAAEQKIYELAFFDSLTHLPNRQSFLERLAQDIRVAQREKQKLAVLFMDLDGFKGV 304

Query: 143 NDNFGHPVGDKVIAFLSDQL------------VVVFGTPMFVGRLGGEEFAAAALG-SSE 189
           ND  GH  GD ++   +++L            +   G  + + RLGG+EF A   G + E
Sbjct: 305 NDTMGHDAGDLILQSAAERLRNSIRPGDSASRLAEDGAQVGLARLGGDEFTAVIPGITHE 364

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAK 248
           ++A  +AN +R+ +      + +G  + +T S GIA   H     +T++  AD A+Y AK
Sbjct: 365 EDALRVANRIREQMRTP--FVLAGSEVVLTSSIGIAVFPHDGADAATLLKHADTAMYHAK 422

Query: 249 KSGRNRVVCFS 259
             GR+    +S
Sbjct: 423 SCGRDNCQFYS 433


>gi|92109707|ref|YP_571993.1| diguanylate cyclase [Nitrobacter hamburgensis X14]
 gi|91802789|gb|ABE65161.1| diguanylate cyclase (GGDEF domain) [Nitrobacter hamburgensis X14]
          Length = 613

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 10/167 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
           +R+  ++ +D L+GL N     + L S        N+ +S +  D+D+FK+ ND++GH  
Sbjct: 425 DRLRAMAMLDPLTGLANRRQLETVLESRLLEANRANQPISCIMLDVDHFKRFNDDYGHDA 484

Query: 151 GDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD V+  + D L      T  F  R GGEEF         + A + A + R  I++ Q+ 
Sbjct: 485 GDVVLRAVGDLLKRSTRDTDAF--RYGGEEFLLLMPDMGAEHALLRAEETRCKIKDLQVE 542

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                   IT S G A        S ++  AD AL  AK+SGRN VV
Sbjct: 543 HGGRELGTITASLGTATAPDHCMFSQLVRTADAALLRAKESGRNCVV 589


>gi|89092074|ref|ZP_01165029.1| GGDEF protein [Oceanospirillum sp. MED92]
 gi|89083809|gb|EAR63026.1| GGDEF protein [Oceanospirillum sp. MED92]
          Length = 304

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 104/217 (47%), Gaps = 24/217 (11%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G +  L + +S +++   I L +  I+  + K+L  +  R+ +LS  D L+ + N     
Sbjct: 96  GGDDYLTKPVSPIVLKAKI-LAMERIA-KMKKDLDSANARLEKLSSQDPLTKISNRRDLE 153

Query: 120 SSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-F 171
            +L            +L+ +  DIDYFK  NDN+GH  GD  +  ++  L          
Sbjct: 154 HNLLKEWQRSKRDQTELAAIMLDIDYFKPYNDNYGHQQGDDCLKVVAKTLKKCLNRSHDL 213

Query: 172 VGRLGGEEFA----AAALGSSEQEAAILANDLRKIIENSQINIS---SGPSIHITISAGI 224
           V R GGEEFA     A L  +E  A  + + L+      + N+    S  +  +T+S GI
Sbjct: 214 VARYGGEEFAIILPDANLSGAETVALQILDALK------EANLKHEFSTVADRVTVSMGI 267

Query: 225 AE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  R   E  + +I +AD+ALY AK++GRNR   + +
Sbjct: 268 SSTRFAAETPNALIKQADEALYQAKENGRNRFELYQE 304


>gi|310829696|ref|YP_003962053.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Eubacterium limosum KIST612]
 gi|308741430|gb|ADO39090.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Eubacterium limosum KIST612]
          Length = 1038

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 11/165 (6%)

Query: 98  NRISQLSRIDCLSGLLNHS----AFISSLGSYNE--KLSIVFFDIDYFKQINDNFGHPVG 151
           +R+ + SR D L+GL +          +L + NE  K  ++  DID F+ +N+N GH  G
Sbjct: 138 DRLVEESRCDQLTGLYDQKWTRIKIGEALEANNEMDKGILMLIDIDGFRAVNENLGHIFG 197

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+   +++L         +GR+GG+EF   + G +E + A     +R+I +++    S
Sbjct: 198 DAVLVETAEKLTAHAAPGDVIGRIGGDEFLVYSPGVAENQIAGRVARIRRIFDHTFEGKS 257

Query: 212 SGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNR 254
              +  I+ S G+A  C K+     T+ + ADQAL +AK  GR+R
Sbjct: 258 Q--AYRISCSLGVAA-CPKDGTTFETLFHCADQALSMAKMEGRDR 299



 Score = 39.3 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 52/98 (53%), Gaps = 5/98 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-ISSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVGD 152
           N +  +  +D L+G+   S F + +   ++    ++ ++V FDID F+ IN+  G+ +G+
Sbjct: 609 NFVDNILYVDKLTGISTFSRFELDTTEIFDHETGKEYAMVTFDIDEFRYINEFHGYSMGN 668

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +++ ++S  LV          R+ G+ F A    +SE+
Sbjct: 669 QLLRYISGGLVGAMSGAEVCARVTGDVFVALVEWTSEE 706


>gi|238023697|ref|YP_002907929.1| hypothetical protein bglu_2g02230 [Burkholderia glumae BGR1]
 gi|237878362|gb|ACR30694.1| Hypothetical protein bglu_2g02230 [Burkholderia glumae BGR1]
          Length = 381

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 82/156 (52%), Gaps = 7/156 (4%)

Query: 104 SRIDCLSGLLNHSA-FISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +R D L+GLLN +  F ++ G    +    +++ + D+D FK IND +GH  GD+++  +
Sbjct: 218 ARHDMLTGLLNRAGLFNAANGGKRARIRAGMTLFYLDLDGFKPINDAYGHEAGDRLLVQV 277

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +++L+ + G+   V R+GG+EF        E  A  LA  + + I      ++ G  + +
Sbjct: 278 AERLLRLAGSDALVARMGGDEFVVVGDCRGEATARELAGAIAREIARP-FELAPGIRVQV 336

Query: 219 TISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253
             S GI     ++  I  ++  AD A+Y AK++ + 
Sbjct: 337 GASVGITPVSGEDTDIDALLRIADAAMYDAKRNKKG 372


>gi|150377740|ref|YP_001314335.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae
           WSM419]
 gi|150032287|gb|ABR64402.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae
           WSM419]
          Length = 685

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 19/177 (10%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQINDNFG 147
           S  ++  ++  D L+GL N  +F   L        GS   K +++  D++ FK+IND  G
Sbjct: 246 SQQQLRYMAAHDALTGLPNRISFTDRLIEVLHEARGS-GRKFAVIGIDLNRFKEINDTLG 304

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI----I 203
           H  GD+ +  +S ++     +  FV RLGG+EFAA     +++E +  A+ L +I    I
Sbjct: 305 HSAGDEALRIVSRRMAQSLDSDEFVARLGGDEFAAVKTCVTKKEVSAFADRLAEIFGRPI 364

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
               I ++ G S+   I    AE   +     ++  AD A+Y AK +  + V CF D
Sbjct: 365 RVGNIEVTVGASMGAAIWPDDAEAPDE-----LVNNADLAMYHAKHTFLD-VPCFYD 415


>gi|108801405|ref|YP_641602.1| diguanylate cyclase [Mycobacterium sp. MCS]
 gi|119870558|ref|YP_940510.1| diguanylate cyclase [Mycobacterium sp. KMS]
 gi|108771824|gb|ABG10546.1| diguanylate cyclase [Mycobacterium sp. MCS]
 gi|119696647|gb|ABL93720.1| diguanylate cyclase [Mycobacterium sp. KMS]
          Length = 361

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 11/157 (7%)

Query: 107 DCLSGLLN------HSAFISSLGSYN--EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+GLLN      HSA + + G  +    L +V  D+D FK+IND +GH VGD+ +  +
Sbjct: 198 DPLTGLLNRRAFYAHSAKLLTGGPSHGGTHLVMVVVDLDDFKRINDTYGHQVGDEALISV 257

Query: 159 SDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
              L   V G P  +GR GGEEF  AA+  ++  A +      +I    +   +S  +  
Sbjct: 258 GQALSRAVVGFPAEIGRSGGEEFVVAAVLETDDPAPLAEQICGEIAALPEPVTASVGTAC 317

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           I + A  +   H+  +  ++  AD A+Y AK++G N+
Sbjct: 318 IALDA--SRGNHESTLDRMVRAADAAMYEAKRAGGNK 352


>gi|262374968|ref|ZP_06068202.1| diguanylate cyclase domain-containing protein [Acinetobacter
           lwoffii SH145]
 gi|262309981|gb|EEY91110.1| diguanylate cyclase domain-containing protein [Acinetobacter
           lwoffii SH145]
          Length = 618

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 78/141 (55%), Gaps = 3/141 (2%)

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
           S       +++ ++ D+D FK +ND FGH VGD+++  L+ ++ ++ G    + R+GG+E
Sbjct: 216 SGQSEQQHEIAFLYIDLDRFKAVNDVFGHLVGDQLLIQLTTRIHLLLGHHSKLLRIGGDE 275

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIY 238
           F      +S  +AA ++  + ++I+ S   +  G SIHI+ S GIA    H + +  ++ 
Sbjct: 276 FLLVLENTSVAKAAKMSEQILELIQES--FLIEGKSIHISGSIGIAMYPEHGKNLQDLLV 333

Query: 239 RADQALYVAKKSGRNRVVCFS 259
            AD A+  +K  GRN    F+
Sbjct: 334 NADAAMLSSKYQGRNTYSVFN 354


>gi|260777445|ref|ZP_05886339.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607111|gb|EEX33385.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 349

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 77/157 (49%), Gaps = 9/157 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D ++G  N     SSL +  +     SI   DID FK IND +GH VGD+VI  +   + 
Sbjct: 180 DPMTGAYNRHQLQSSLENIRQLYTTSSIALIDIDKFKTINDLYGHDVGDQVITQVVKIID 239

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHITISA 222
                   + RLGG+EF    L   + +   + + +  I  N  +  S  P    +T+S+
Sbjct: 240 AETEHSTMLFRLGGDEF---LLLFPQADQYAVESSMEAI--NRAVKESDYPQEAKVTLSS 294

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           G+AE    E I   + RAD ALY +K  GR+RV  FS
Sbjct: 295 GVAESQPFETIEDWVKRADIALYQSKSLGRDRVSLFS 331


>gi|254000428|ref|YP_003052491.1| PAS/PAC sensor-containing diguanylate cyclase [Methylovorus sp.
           SIP3-4]
 gi|253987107|gb|ACT51964.1| diguanylate cyclase with PAS/PAC sensor [Methylovorus sp. SIP3-4]
          Length = 323

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 99/211 (46%), Gaps = 20/211 (9%)

Query: 62  EYILVENLSLVIISIT--ISLLLGYI-----SGSILKELFISYNRISQLSRIDCLSGLLN 114
           EYI + ++  V+ +    +  L+G++          ++L      + +LS  D L+ + N
Sbjct: 108 EYIWIRDVVHVLRNADGEVEALIGFMFDISERKKTEEKLLQLQKELEELSFQDGLTRVAN 167

Query: 115 HSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
              F S       +    ++ LS++  DIDYFKQ ND++GH  GD  +  ++ +++   G
Sbjct: 168 RRMFDSIIQVEWTNARRNSQPLSLIMLDIDYFKQYNDHYGHIQGDDCLKQVA-EILSSAG 226

Query: 168 TPM--FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS---GPSIHITISA 222
           T    F  R GGEEF      +    A  +A   RK+I  +QI  +    GP + I++  
Sbjct: 227 TRANDFFARFGGEEFVLVLPQTDSDAAKKIAERCRKLIFKAQIPHAKSLIGPVLTISVGV 286

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           G     +++     I   DQ LY AK+ GRN
Sbjct: 287 GTVIPGYQDESVDFINSVDQRLYQAKQLGRN 317


>gi|332533998|ref|ZP_08409849.1| GGDEF domain protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036547|gb|EGI73014.1| GGDEF domain protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 146

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 2/143 (1%)

Query: 117 AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
           AF S L   N    I+  D+D FK+IND FGH  GD+ +  L+              R G
Sbjct: 6   AFKSELKDNNTAFVILLADVDNFKKINDQFGHDFGDEALIQLAKTFDKSIPKNAIASRWG 65

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236
           GEEF      ++ ++   +A  +   ++ S +++ S  S +IT+S G+     +  I   
Sbjct: 66  GEEFLIVIPNATVEQGEQVAEKIHNALKASVVSLFS-DSTNITLSIGVISASAERSIDLD 124

Query: 237 IYRADQALYVAKKSGRNRVVCFS 259
           I RAD+ LY AK  G+NR  C S
Sbjct: 125 IKRADELLYKAKAQGKNR-TCSS 146


>gi|330470573|ref|YP_004408316.1| GAF sensor-containing diguanylate cyclase [Verrucosispora maris
           AB-18-032]
 gi|328813544|gb|AEB47716.1| diguanylate cyclase with gaf sensor [Verrucosispora maris
           AB-18-032]
          Length = 472

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 15/163 (9%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           + +R+ + +  D L+GL +   F   + +    + +++  D+D FK +ND +GH  GD+V
Sbjct: 317 TLDRLREQASSDPLTGLRHTGPFGQRIATATPGRTALLAIDVDGFKTVNDTYGHQAGDRV 376

Query: 155 IAFLSDQL--VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +  L+  L   +  G  ++  R+GG+EF A    S  +EA  +A    ++ E ++     
Sbjct: 377 LVGLARALEGALRQGDELY--RIGGDEFVAVIEVSRPEEAVRVAE---RLTEAAR----- 426

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              I  TIS G+A     E     + RADQALY  K+ GR+ V
Sbjct: 427 --RIGRTISVGVALPRPGESPELTLRRADQALYAVKRQGRDGV 467


>gi|332159678|ref|YP_004296255.1| RNase II stability modulator [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325663908|gb|ADZ40552.1| RNase II stability modulator [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330859979|emb|CBX70307.1| protein gmr [Yersinia enterocolitica W22703]
          Length = 664

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + +   +  R+  L+  D ++GL N  A    + S      +  + I++ D+D FK
Sbjct: 218 SGTDITKERRAQERLRILANTDMITGLPNRHAIHERINSAIQTRGDSSVGIIYLDLDNFK 277

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILA 196
           ++ND++GH  GD+++  +S  ++   G    + RLGG+EF      A L   E     + 
Sbjct: 278 KVNDHYGHMFGDRLLKDVSLAILSCLGDNEMLARLGGDEFIVLVENATLNLLETTTQRIL 337

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           N ++       I + +G SI I +        H + +  II  AD A+Y AK+ G+    
Sbjct: 338 NRMKLPFRIGLIEVYTGCSIGIALCPE-----HGDTLENIIRSADTAMYTAKEHGKQTYS 392

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 393 IFSQQMNK 400


>gi|324117520|gb|EGC11426.1| EAL domain-containing protein [Escherichia coli E1167]
          Length = 661

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMAS--- 335

Query: 201 KIIENSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 336 RILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 S 259
           +
Sbjct: 396 T 396


>gi|302875338|ref|YP_003843971.1| diguanylate cyclase/phosphodiesterase [Clostridium cellulovorans
           743B]
 gi|307688918|ref|ZP_07631364.1| diguanylate cyclase/phosphodiesterase [Clostridium cellulovorans
           743B]
 gi|302578195|gb|ADL52207.1| diguanylate cyclase/phosphodiesterase [Clostridium cellulovorans
           743B]
          Length = 774

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 107/219 (48%), Gaps = 18/219 (8%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
           I +++ + ++F  Y+ L          + N+ L+    +++ +L  +     KEL  + N
Sbjct: 291 IVSILIVYSLFRKYVQLA---------IRNVYLLKREKSMTDVLEQLVKERTKELVNANN 341

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGDK 153
            +  LS+ D L+GL N   FI  + S  E     K S++  D+D FK IND  GH +GDK
Sbjct: 342 ILENLSKKDVLTGLYNRRYFIEYIDSLIEASESSKFSVICIDLDRFKAINDAHGHEIGDK 401

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  ++ +L     + + + R GG+EF     G +   +  L  +  +I+E  +  I   
Sbjct: 402 VLVEVAARLQKWCPSDVKISRAGGDEFTILVEGDNSFYSLRLYCE--EIVELCRKTIEIS 459

Query: 214 P-SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250
           P + H+ +S GIA   +      T++  AD A+Y  KK+
Sbjct: 460 PYTFHVGVSLGIASYPNDSLDRETLMKYADIAMYNCKKN 498


>gi|302344492|ref|YP_003809021.1| response regulator receiver modulated diguanylate cyclase
           [Desulfarculus baarsii DSM 2075]
 gi|301641105|gb|ADK86427.1| response regulator receiver modulated diguanylate cyclase
           [Desulfarculus baarsii DSM 2075]
          Length = 328

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 15/169 (8%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +++ +D L+GL N   F  +L        S  E L ++  DID+FK  ND  GH  GD
Sbjct: 157 LRKMAMVDGLTGLANRRYFDEALAREWRRAQSRGEPLGLLMIDIDFFKAYNDAHGHQQGD 216

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
             +  ++  +      P     R GGEEFA    G+    A  +A   R +   S + + 
Sbjct: 217 VCLKQVAQAIRDCVSRPGDLAARYGGEEFAVILPGADPDGATDVAR--RVLTAVSALGLP 274

Query: 212 SGP---SIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRV 255
            G    + H+T+S G A       +  +T+I  ADQALY AK  GRN+V
Sbjct: 275 HGHASVADHVTVSVGAAALAPGPGQEAATLIQTADQALYQAKSLGRNQV 323


>gi|260776627|ref|ZP_05885522.1| GGDEF domain protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607850|gb|EEX34115.1| GGDEF domain protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 329

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 71/150 (47%), Gaps = 14/150 (9%)

Query: 107 DCLSGLLNHSAFISSLGS-YNEKLSIV---FFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           DCL+G LN  A +       N  L+ V   F DID FKQIND  GH  GD V+  +    
Sbjct: 183 DCLTGCLNRRALLQRASDCLNTNLTYVACFFADIDKFKQINDKNGHEAGDVVLTAVGHAF 242

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
              F      GR GG+EF A A    E+    L  +LR+    S   I+   +I + +S 
Sbjct: 243 KHCFSESGISGRYGGDEFVAFAFSDDEEALRTLHTELRE----SLAEITPLHTIEVNVSV 298

Query: 223 GIA----ERCHKEPISTIIYRADQALYVAK 248
           G++    ER   + I  +I +AD+ +Y  K
Sbjct: 299 GLSIVNIERL--DSIECLIKQADKQMYQVK 326


>gi|225873566|ref|YP_002755025.1| GGDEF domain protein [Acidobacterium capsulatum ATCC 51196]
 gi|225792861|gb|ACO32951.1| GGDEF domain protein [Acidobacterium capsulatum ATCC 51196]
          Length = 407

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 16/168 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q SR+D L+G+LN      +L           +  SI   D+D+FK IND +GH  GD
Sbjct: 231 LRQQSRVDALTGVLNRRGLEEALARELAIFERDRKNFSIGILDLDHFKVINDRYGHVAGD 290

Query: 153 KVIAFLSDQLVVVFGTPM---FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
              AFL+  + V+         + R GG+EF     G+S  EA      L K I +    
Sbjct: 291 ---AFLTKAVNVLRAHTRATDIIARFGGDEFILLMPGTSTAEAGRRFVQLCKAIRDYSGW 347

Query: 210 ISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255
           ++  P ++ T S G      ++ IS   ++  AD ALY AK +GR++ 
Sbjct: 348 VAGEP-VNFTASIGFTNTDSRQNISNSGLLREADAALYQAKHNGRDQA 394


>gi|70728517|ref|YP_258266.1| response regulator WspR [Pseudomonas fluorescens Pf-5]
 gi|68342816|gb|AAY90422.1| response regulator WspR [Pseudomonas fluorescens Pf-5]
          Length = 333

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 13/168 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L   D L+GL N   F   L            +LS++  D+DYFK  ND FGH  GD
Sbjct: 164 LQRLMNSDGLTGLSNRRHFDEYLELEWRRAMREQSQLSLLMIDVDYFKTYNDTFGHLEGD 223

Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           + +  ++  +      P     R GGEEF      +S   A ++A  LR+ +E  +I +I
Sbjct: 224 EALRKVATAIREASSRPSDLPARYGGEEFVLVLPNTSPGGARLVAEKLRQTVEALKIPHI 283

Query: 211 SSGPSIHITISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRNRV 255
           +      +TIS G++     +P S    +I  AD+ LY+AK +GRN+V
Sbjct: 284 APVEGASLTISIGLST-VTPQPNSHCRQLISAADKGLYLAKNNGRNQV 330


>gi|167844851|ref|ZP_02470359.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei B7210]
 gi|254195123|ref|ZP_04901552.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei S13]
 gi|254298414|ref|ZP_04965866.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 406e]
 gi|157808300|gb|EDO85470.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 406e]
 gi|169651871|gb|EDS84564.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei S13]
          Length = 772

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 100/203 (49%), Gaps = 14/203 (6%)

Query: 62  EYILVENLSLVIIS-ITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +Y    N+ L++   IT+++L   G  +G I K L      ++QL+  D L+GL N  A 
Sbjct: 278 DYHHTRNVYLLMTGFITLAMLAFFGVATGLIGK-LLGREREMTQLAEFDLLTGLANRYAT 336

Query: 119 ISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           + SL       S   +L+I+F D+D FK +ND  GH  GD V+   + +L         +
Sbjct: 337 LRSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVANEGAL 396

Query: 173 GRLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHK 230
            R+GG+EF     G + E+ A  LA  + ++      ++  G S  +  S GIA      
Sbjct: 397 ARIGGDEFVVVVKGENVERRAERLAEAIVRMF-GEPFDV-RGSSFVLHASIGIALHSVEN 454

Query: 231 EPISTIIYRADQALYVAKKSGRN 253
           E    ++ +AD A+Y AK +G+N
Sbjct: 455 ESEIDLLKKADLAMYSAKDAGKN 477


>gi|332305078|ref|YP_004432929.1| diguanylate cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172407|gb|AEE21661.1| diguanylate cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 680

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 13/188 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFF 134
           L  ++ ++ +++     +I+QLS +D L+ L+N  AF  SL          N +L+++F 
Sbjct: 229 LNVVNNTLEEQVSKRTEKIAQLSYLDPLTQLMNRKAFTQSLSKLAARAEQSNSELALLFI 288

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK+IND  GH VGD V+  ++ + +  F     +GR  G+EF  A   S    A  
Sbjct: 289 DLDGFKKINDTMGHQVGDSVLQEVTRR-ISAFSDDNKIGRWTGDEFLVALPYSDAPTAKA 347

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGR 252
           +A+ +  I   SQ    +  S+H+  + GIA  C  H    + +I  AD  +   K +  
Sbjct: 348 IASAI--ITSISQAISVNNNSVHLGATVGIA-MCPEHSTEATELIQFADLVMSEQKVTPD 404

Query: 253 NRVVCFSD 260
              V FS+
Sbjct: 405 RTPVIFSN 412


>gi|306842502|ref|ZP_07475153.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2]
 gi|306287358|gb|EFM58838.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2]
          Length = 703

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 86/170 (50%), Gaps = 9/170 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVG 151
            R++ ++  D L+GL N + F   +GS  +K       ++ + DID+FK +ND+  H  G
Sbjct: 264 KRMAHIAMHDSLTGLPNRAYFAHHVGSLLKKGSDCDPFALFYLDIDHFKNVNDSISHQAG 323

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  ++ +L  +     F+ RLGG+EFA      +  + A+ A+ +    ++    + 
Sbjct: 324 DQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGTLAQIAMFADRVLSAFQDP--FVL 381

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            G +  +T S GIA+   H +    ++  AD ALY +K  GR     + D
Sbjct: 382 GGNAEFVTCSMGIAQAPLHGDNPDVLMRNADLALYASKSGGRRTFRFYQD 431


>gi|306819841|ref|ZP_07453495.1| response regulatory protein [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304552088|gb|EFM40025.1| response regulatory protein [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 310

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 11/179 (6%)

Query: 88  SILKELFIS--YNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDY 138
            IL+E  ++  +N++ + +  D L+ L N       L   NE       +  I F DID 
Sbjct: 131 KILEEYHMNQRFNKMKKQAETDELTELYNRHKMKEILNDMNEMVGDKNSEFYISFADIDN 190

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK IND++GH +GDKV+  ++  L    G+   V R GGEEF           E     +
Sbjct: 191 FKNINDSYGHDIGDKVLRSVAGMLKSELGSDNVVSRWGGEEFLILFYDVKGHTEVFQRLD 250

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +RK I  S     +G  I  T++ G         +  +  +AD+ +Y+ K  G+N V+
Sbjct: 251 SIRKKISYSTFEY-NGIKIKFTVTFGATSSLSHTNVYDMAKKADELMYLGKCQGKNVVL 308


>gi|239995763|ref|ZP_04716287.1| response regulator receiver modulated diguanylate cyclase
           [Alteromonas macleodii ATCC 27126]
          Length = 401

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 3/159 (1%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           L+  D L+G L   A ++SL      N+   I   D+D FK+IND +GH VGD+V+   +
Sbjct: 241 LAERDSLTGALTRRAMLNSLKKALKGNKASCIALLDVDNFKKINDKYGHVVGDEVLTTFT 300

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +         + R GGEEF      S ++ A  + ++L   +   +   ++     ++
Sbjct: 301 QIIKNRIRKSDKLCRYGGEEFLIYFSDSDQKSAKRILDELNFALSRQKHWSNTKEMFSVS 360

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            S+G+ +   +  + TII   D+ LY AK+ GR RV  F
Sbjct: 361 FSSGLLDVNGETNLDTIIKMCDELLYRAKREGRARVASF 399


>gi|167893384|ref|ZP_02480786.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 7894]
          Length = 772

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 100/203 (49%), Gaps = 14/203 (6%)

Query: 62  EYILVENLSLVIIS-ITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +Y    N+ L++   IT+++L   G  +G I K L      ++QL+  D L+GL N  A 
Sbjct: 278 DYHHTRNVYLLMTGFITLAMLAFFGVATGLIGK-LLGREREMTQLAEFDLLTGLANRYAT 336

Query: 119 ISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           + SL       S   +L+I+F D+D FK +ND  GH  GD V+   + +L         +
Sbjct: 337 LRSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVANEGAL 396

Query: 173 GRLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHK 230
            R+GG+EF     G + E+ A  LA  + ++      ++  G S  +  S GIA      
Sbjct: 397 ARIGGDEFVVVVKGENVERRAERLAEAIVRMF-GEPFDV-RGSSFVLHASIGIALHSVEN 454

Query: 231 EPISTIIYRADQALYVAKKSGRN 253
           E    ++ +AD A+Y AK +G+N
Sbjct: 455 ESEIDLLKKADLAMYSAKDAGKN 477


>gi|157364687|ref|YP_001471454.1| diguanylate cyclase [Thermotoga lettingae TMO]
 gi|157315291|gb|ABV34390.1| diguanylate cyclase [Thermotoga lettingae TMO]
          Length = 563

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 7/152 (4%)

Query: 106 IDCLSGLLNHS---AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           ID L+GL N+     + ++L    ++  I F D+D  K INDN+GH VGD V+  ++++L
Sbjct: 412 IDSLTGLYNYRFLLRYRANLEDSQKRFVICFIDVDGLKDINDNYGHSVGDTVLKIIAEKL 471

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             V        R+GG+EFA     +   EA  +   +   + +++I+  SG  + I+IS 
Sbjct: 472 RAVIRKKDVALRIGGDEFAIIFDDADLNEAENVMRRIESALSDTKIDNVSG--LKISISY 529

Query: 223 GIAERC--HKEPISTIIYRADQALYVAKKSGR 252
           G+AE     +     I+  AD ++Y  K S +
Sbjct: 530 GLAEGSVESQATFEEILKSADISMYRQKVSKK 561


>gi|152964607|ref|YP_001360391.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151359124|gb|ABS02127.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 800

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 15/166 (9%)

Query: 103 LSRIDCLSGLLNHSAFISSLG---------SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           L+R D ++GL N   F   L          S  ++L +++ D+D FK +ND FGH  GD+
Sbjct: 361 LARRDVVTGLPNRLQFAERLAQELDRAREASRLDRLVVLYLDLDGFKSVNDRFGHEAGDE 420

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-S 212
           ++  +  +L         V RLGG+EFA       + E        R+++   ++ +   
Sbjct: 421 LLRLVGSRLRDTLRGGSTVARLGGDEFAVLLPDCQDVEGLC-----RRVLVALRVEVRMR 475

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           G  + +  S G++     + + T++  AD A+Y AK +G+NR V F
Sbjct: 476 GHVLRVQGSIGLSRARPGDDVGTLLRNADTAMYRAKATGKNRWVEF 521


>gi|149182637|ref|ZP_01861106.1| hypothetical protein BSG1_13231 [Bacillus sp. SG-1]
 gi|148849660|gb|EDL63841.1| hypothetical protein BSG1_13231 [Bacillus sp. SG-1]
          Length = 737

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 93/180 (51%), Gaps = 18/180 (10%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYF 139
           I G  + E   +   I +++  D L+ L N + F   L      S +  L+I+F D+D F
Sbjct: 288 IVGRDITERKKTEETIREMAYYDTLTSLPNRNMFKLRLNKLLESSPSTSLAILFLDLDRF 347

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND  GH  GD+++  ++D+L  V      V R GG+EF      S +++AA L+   
Sbjct: 348 KVINDTKGHSTGDRLLVKVADRLTDVLNKEGEVFRQGGDEFILLLDNSDKEKAASLS--- 404

Query: 200 RKIIEN--SQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRN 253
            +I+++    I+I SG    +T S GI+    +   +E   T+I  AD A+Y+AK  G+N
Sbjct: 405 VRILQSFTKPIDI-SGQDFFVTPSIGISMYPDDGMDQE---TLIKHADTAMYLAKDRGKN 460


>gi|111022736|ref|YP_705708.1| hypothetical protein RHA1_ro05772 [Rhodococcus jostii RHA1]
 gi|110822266|gb|ABG97550.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 1324

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 13/155 (8%)

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N + F+  L    ++       + ++  D+D FK +ND+ GHP GD+++  ++
Sbjct: 348 DRLTGLANRALFLDRLDQALQRQRRELTPIVVLCVDLDDFKTVNDSLGHPAGDELLIRVA 407

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN---ISSGPSI 216
           ++L     +   V RLGG+EFAA   GS E   +     L   I    I+   +S  PSI
Sbjct: 408 ERLTGCVRSTDTVARLGGDEFAALVEGSVEDALSAADRVLEAFIPPFVIDGVALSIRPSI 467

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
            +TI+         E   +++ +AD A+YVAK+ G
Sbjct: 468 GLTIATSEVPDATTE---SLLKQADLAMYVAKRCG 499



 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 21/162 (12%)

Query: 104  SRIDCLSGLLNHSAFISSLGS-YNEKLS------------IVFFDIDYFKQINDNFGHPV 150
            +R D L+ L N  A  ++L + Y + ++            ++  D+D F +IND+FG  V
Sbjct: 893  ARTDDLTNLANRRAITAALAAEYFDHVAQPAGQPRRPGPGVLLMDLDRFNEINDSFGRYV 952

Query: 151  GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQIN 209
            GD+++  ++D+L           R+GG+ FA     G    EA  LA+ L +++     +
Sbjct: 953  GDQLLRQVADRLARSVRPGDLPARIGGDAFAVLLPSGIDLAEACALADRLLEVLREP-FD 1011

Query: 210  ISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAK 248
            +    ++H+  S GIA   + C       ++ RA  A+Y AK
Sbjct: 1012 LDE-VTVHVEASIGIALCPQHCANP--QDLLQRAGVAMYRAK 1050


>gi|154247074|ref|YP_001418032.1| diguanylate cyclase [Xanthobacter autotrophicus Py2]
 gi|154161159|gb|ABS68375.1| diguanylate cyclase [Xanthobacter autotrophicus Py2]
          Length = 349

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 7/175 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISS-----LGSYNEKLSIVFFDIDYFKQINDN 145
           + + ++ +R    S  D L+G+ N   F+ +     L       +    D+D FK IND 
Sbjct: 167 RAMRLARDRALYASYTDDLTGVANRR-FVGARVADMLEPDGPGGAFCLIDLDQFKAINDR 225

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GD ++   + ++V         GR+GGEEF      +S + A  +      ++  
Sbjct: 226 FGHQAGDLILRDFAARMVREVRRSDCFGRVGGEEFVLVLPATSARAARGIVEQALDVVRQ 285

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++  +++ P    + SAGIAE    +  + +  RAD+ALY AK +GR+RV    D
Sbjct: 286 ARA-LTAQPDFAYSFSAGIAESRPGDTFADLYSRADRALYAAKMAGRSRVEVEQD 339


>gi|302551644|ref|ZP_07303986.1| sensory box/GGDEF family protein [Streptomyces viridochromogenes
           DSM 40736]
 gi|302469262|gb|EFL32355.1| sensory box/GGDEF family protein [Streptomyces viridochromogenes
           DSM 40736]
          Length = 632

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 102/215 (47%), Gaps = 27/215 (12%)

Query: 74  ISITISLLLGYISGSILKELFIS-----YNRISQLSRIDCLSGLLNHSAFISSLG----- 123
           + +T++ L     G +L    IS       R+  L   D ++ L N + F   L      
Sbjct: 140 VQVTVAPLPAEDRGVLLSVADISGRRELQARLRHLQMHDPVTRLPNRTLFFERLSAALEA 199

Query: 124 -SYNE----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-------TPMF 171
            SY +    ++ + + D+D FK IND  GH VGD+++A ++++L            T   
Sbjct: 200 ESYEQSGTGRIGLCYLDLDGFKAINDTLGHRVGDRLLAAVAERLTRCADASGQSRTTAPL 259

Query: 172 VGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
           V RLGG+EFA     S+  E  A LA  + + I++   +I SG  + ++ S G+ ER   
Sbjct: 260 VARLGGDEFALLVEDSTGTEQLAELAESVLEAIQDP-FDI-SGQRLSVSASIGVVERHAA 317

Query: 231 EPIST-IIYRADQALYVAKKSGRNRVVCFSDIENN 264
              +T ++  AD  LY AK  G++R   F D E N
Sbjct: 318 GTTATALVQDADTTLYWAKADGKSRWTLF-DPERN 351


>gi|261253856|ref|ZP_05946429.1| hypothetical protein VIA_003883 [Vibrio orientalis CIP 102891]
 gi|260937247|gb|EEX93236.1| hypothetical protein VIA_003883 [Vibrio orientalis CIP 102891]
          Length = 648

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 17/173 (9%)

Query: 104 SRIDCLSGLLNHSAFISSLGS--YNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + +D L+GL N   F   L    +NE  L +++ DID FK IND+ GH +GDKVI  +S 
Sbjct: 222 AHLDSLTGLYNRFGFTKRLEQLIHNETPLIMLYLDIDNFKNINDSLGHHIGDKVIKEVSS 281

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------ 214
           +L  +      +G LGG+EF                N + +++    I++ + P      
Sbjct: 282 RLKRLLPQQAVLGHLGGDEFGIILPEPDN-------NRMVEMLSERIISLINQPFDLHHF 334

Query: 215 SIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           S  +  S G +A          ++  AD A+Y AK  GRNR++ F+D  N   
Sbjct: 335 SKRLACSIGSVAYPGDGNDARILLQNADTAMYEAKDRGRNRLIKFNDQMNKEA 387


>gi|148264308|ref|YP_001231014.1| diguanylate cyclase [Geobacter uraniireducens Rf4]
 gi|146397808|gb|ABQ26441.1| diguanylate cyclase with GAF sensor [Geobacter uraniireducens Rf4]
          Length = 353

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 19/173 (10%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           + R   L+  D L+GL NH  F       +     Y + LSI+  D+D FK+ ND FGH 
Sbjct: 177 HQRTKILAITDALTGLYNHRYFHQLFNQELGRAKRYRKNLSIIMLDVDDFKKFNDKFGHS 236

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVG---RLGGEEFAAAALGSSEQEAAILANDLRK-IIEN 205
            GD V+A + +   ++ GT   V    R GGEEF      +  + A  +A  LR+ I + 
Sbjct: 237 TGDLVLASIGE---IITGTLRGVDHAFRYGGEEFVVLLPETKLESAVQVAERLRESITQE 293

Query: 206 SQINISSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNRV 255
           +   +       +T+S G+A  C+         +  + D  LY AK  G+N+V
Sbjct: 294 TTAKLKGISDFGVTVSVGVA--CYPNDAVKREDLFNKVDSLLYQAKVFGKNKV 344


>gi|119471269|ref|ZP_01613772.1| PAS sensor diguanylate cyclase/phophodiesterase [Alteromonadales
           bacterium TW-7]
 gi|119445735|gb|EAW27018.1| PAS sensor diguanylate cyclase/phophodiesterase [Alteromonadales
           bacterium TW-7]
          Length = 739

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 10/176 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S  ++S  S  D L+GL N   F       +S         ++ + D+D FK +ND  GH
Sbjct: 309 SEEKLSYQSSHDSLTGLANRREFKRRVELLLSVAAEKRVDHALCYMDLDQFKVVNDTCGH 368

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+++  L   L  V      V RLGG+EFA      S   A  + + ++K IE+ + 
Sbjct: 369 LAGDELLRQLGSLLQKVVRKTDVVARLGGDEFAVLMENCSFDNAHRVTSLIQKEIEDYRF 428

Query: 209 NISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV-VCFSDIE 262
            +  G S  I +S G+ +   K    + ++  AD A Y+AK+ GRNR+ V + D E
Sbjct: 429 -VWEGRSFRIGVSMGLIQITDKYVDFTEVLKLADVACYIAKEKGRNRIHVHYDDDE 483


>gi|91792580|ref|YP_562231.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91714582|gb|ABE54508.1| diguanylate cyclase with GAF sensor [Shewanella denitrificans
           OS217]
          Length = 410

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 13/165 (7%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI----VFFDIDYFKQINDNFGH 148
           L+    +I +L+  D L+GL N   F   L  +  K  +    V  D+D  K IND  GH
Sbjct: 251 LYQKSQQIQKLANTDPLTGLYNRKRFEERLSQWQHKPQLGSFLVILDMDNLKTINDIHGH 310

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD  I  L+D +  ++     +GR GG+EF     G   +    LA +L  +++N + 
Sbjct: 311 QAGDHAITALADAMKTIWPHKALLGRFGGDEFVLICHGPEHKLVKELA-ELAALLDNPKA 369

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
                    +  SAGIA+  ++        +AD A+Y+ K++ ++
Sbjct: 370 GFK------VQFSAGIAD--YQGDWHQAFKQADSAMYLEKRTKKS 406


>gi|78223121|ref|YP_384868.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter metallireducens GS-15]
 gi|78194376|gb|ABB32143.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter metallireducens GS-15]
          Length = 459

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 16/169 (9%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y+    +  ID L+GL N+          I     +   +S++F D+D+FK +ND  GH 
Sbjct: 286 YSNARDMLYIDELTGLFNYRYLDISLDREIKRADRFGSTVSMIFIDLDFFKGVNDTHGHL 345

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VG +V+  +   L         V R GG+EF    + + E+ AA +A  +R+ IE     
Sbjct: 346 VGSQVLNEMGMLLKKSVREVDIVIRYGGDEFTVMLVETGEKGAATVAERIRRSIEGHTFL 405

Query: 210 ISSGPSIHITISAGIAERCHKEPIST-----IIYRADQALYVAKKSGRN 253
            + G +I +T S G A  C+  P  T     ++  AD+A+Y  K+ G+N
Sbjct: 406 AAEGFNIRLTASLGYA--CY--PADTQSKLELLELADKAMYQGKEQGKN 450


>gi|325292494|ref|YP_004278358.1| diguanylate-cyclase [Agrobacterium sp. H13-3]
 gi|325060347|gb|ADY64038.1| diguanylate-cyclase [Agrobacterium sp. H13-3]
          Length = 348

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 6/176 (3%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQIN 143
           ++E+  S   +   S  D L+ L N +AF+  LG            S+V  +ID+F++IN
Sbjct: 156 IREVEKSRTDLQASSLRDALTALPNRAAFLEKLGDLFSGAQGASATSLVLLNIDHFREIN 215

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             +G   G+K +  L+           FV R+GG EFA    G S+  A  +A  LR+ +
Sbjct: 216 GKYGPTAGNKALRRLAALFRKAIKKDDFVARIGGNEFAFLFAGVSQNTAEAIAERLRQNV 275

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           E  +   S G   H+T+S G+A        +     A+ AL  A+   RN V+ +S
Sbjct: 276 EALRFVTSEGDGEHLTVSVGVAAVDCTATSAEFFSHAELALLSARCGTRNCVIGYS 331


>gi|302525108|ref|ZP_07277450.1| predicted protein [Streptomyces sp. AA4]
 gi|302434003|gb|EFL05819.1| predicted protein [Streptomyces sp. AA4]
          Length = 433

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 73/132 (55%), Gaps = 10/132 (7%)

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  D+D+FK+IND +GH  GD+V+A ++  +         VGR GGEEF      +  
Sbjct: 304 AVLMIDLDHFKRINDTYGHLTGDEVLAAVAVAIEASVRQSDTVGRFGGEEFVVLLPATGG 363

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHI---TISAGIAERCHKEPIST---IIYRADQA 243
            +   +A  +R  +   ++ +S G  + I   ++S G+A  C+ +  +T   ++  AD A
Sbjct: 364 TDVLGIAERVR--VAVGELTVSVGGPLRISGLSVSVGVA--CYPQAGTTLDEVLRSADAA 419

Query: 244 LYVAKKSGRNRV 255
           LY AK +GRNRV
Sbjct: 420 LYRAKDAGRNRV 431


>gi|257142442|ref|ZP_05590704.1| GGDEF domain-containing protein [Burkholderia thailandensis E264]
          Length = 504

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 10/178 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQI 142
           L++   + +R+ +LSR D L+GL N  A   +L S   +L       SI+F D D+FK+ 
Sbjct: 319 LRDRTAARDRLLELSRTDPLTGLGNRRALDDALQSEWARLQRNDSCLSILFIDADHFKRY 378

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND  GH  GD  +  L+  +    G +     R GGEEF A    + E  AA +A  +R 
Sbjct: 379 NDAHGHTQGDLALKRLAACIARHAGRSGDLAARYGGEEFVAILPDADEAAAARIAASIRA 438

Query: 202 IIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I ++    ++ P    T+S G   A R     +   +  AD ALY AK  GR+R V 
Sbjct: 439 GIRDATRAGATPPIPRFTVSVGCATARRGAHASLDAFVRAADDALYRAKADGRDRTVA 496


>gi|156306248|ref|XP_001617570.1| hypothetical protein NEMVEDRAFT_v1g225972 [Nematostella vectensis]
 gi|156194615|gb|EDO25470.1| predicted protein [Nematostella vectensis]
          Length = 283

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 101/217 (46%), Gaps = 28/217 (12%)

Query: 68  NLSLVIISITISLLLGYISG-------SILKELFISYNRISQLSRIDCLSGLLNHS---- 116
           N   + I  +ISL+ G   G       S + EL  +  ++ QL+  D L+GL N +    
Sbjct: 58  NGEPLPIWASISLIKGPDGGKSYVAVFSDISELKEAEQKLEQLAHYDPLTGLPNRTLFYD 117

Query: 117 AFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            F SSLG    +    +++F D+D FK IND  GH  GD V+  ++ ++         + 
Sbjct: 118 RFASSLGRSARHKRHTALLFIDLDRFKPINDMHGHQTGDAVLIEVARRIQKHIRPDDTLS 177

Query: 174 RLGGEEFAA--AALGSSEQEAAILANDLRK-----IIENSQINISSGPSIHITISAGIAE 226
           RLGG+EF      L SSE+   I    L++     + +  Q++IS+   I +    G+  
Sbjct: 178 RLGGDEFTVIIDGLDSSEKVQLIAQRMLQELKAPILYDEKQLDISASIGIALYPKDGL-- 235

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                   T++  AD A+Y  K+ GRN  + F +  N
Sbjct: 236 -----DAQTLLKHADTAMYHVKERGRNAFMFFDEALN 267


>gi|153213371|ref|ZP_01948760.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|124116024|gb|EAY34844.1| GGDEF family protein [Vibrio cholerae 1587]
          Length = 429

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 8/132 (6%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+IND +GH  GD+++  ++  L         + R GGEEF       S +EA  
Sbjct: 299 DIDHFKKINDQYGHITGDRILQAVASCLRKNVRDGDTIIRFGGEEFLLLFQAHSNKEAWY 358

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + + LR+ +++      +  SI  T   G         +   I RAD ALY AK++GRN+
Sbjct: 359 MLDRLRQRVKDDHSLYGTTISIGFTFIDG--------SLPAAISRADVALYQAKEAGRNQ 410

Query: 255 VVCFSDIENNTC 266
           V+  S+ EN++ 
Sbjct: 411 VIADSEKENDSA 422


>gi|116053165|ref|YP_793486.1| hypothetical protein PA14_66320 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588386|gb|ABJ14401.1| putative sensory box protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 899

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 18/177 (10%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           ++   I +L+  D L+GL N   FI +L      S +  LS++  DID FK+IND+ GH 
Sbjct: 462 LAQQHIEKLAYRDNLTGLANRHYFIGALEERLESSGDRPLSLLLVDIDNFKRINDSLGHQ 521

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA----AALGSSEQEAAILANDLRK--II 203
            GDK++  L+ +L    G    + R    EFA      A+   E  AA + + L K   +
Sbjct: 522 TGDKLLVSLARRLRSCLGDSATLARFASNEFAVLLDDTAVEKGESIAAQVLHMLDKPLFV 581

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +N  INI+      I +++     C  +   T++  A  AL+ AK +G+++V  F++
Sbjct: 582 DNQLINITGS----IGLASAPQHGCDPQ---TLMKYAGLALHKAKANGKHQVQVFTE 631


>gi|221133587|ref|ZP_03559892.1| GGDEF domain-containing protein [Glaciecola sp. HTCC2999]
          Length = 574

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 84/182 (46%), Gaps = 22/182 (12%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIV-------FFDIDYF 139
             I + L  S  ++ +L+ ID L+GL N   F  +L    ++ S+V         D+D+F
Sbjct: 134 NEIKQALVESNQQLKELAEIDQLTGLENRYMFDRNLKKMFQQHSVVSGGFALLLLDLDHF 193

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAIL 195
           K IND  GH VGD+++   + ++         V RLGG+EF   +   +    EQ    L
Sbjct: 194 KTINDTLGHSVGDELLTAAALRIKNNIRQECKVYRLGGDEFGIISTLKNKHEIEQLVPRL 253

Query: 196 ANDLRKIIENSQINISSGPSIHITI---SAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            N L      + +NI    SI I I    A  AE  +K         AD ALY+AK  GR
Sbjct: 254 MNTLNTPYALTDMNIECTSSIGIAIYPDDASSAESLYK--------HADMALYIAKDEGR 305

Query: 253 NR 254
           +R
Sbjct: 306 DR 307


>gi|94265544|ref|ZP_01289291.1| GGDEF:GAF [delta proteobacterium MLMS-1]
 gi|93453944|gb|EAT04294.1| GGDEF:GAF [delta proteobacterium MLMS-1]
          Length = 488

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 12/170 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGH 148
           + R+ + +  D L+GL N   ++   G           + ++++  D+D+FK++ND +GH
Sbjct: 190 FERVRREAMHDELTGLYNRR-YLQDSGRRELHKAERARQPVALLLLDLDHFKEVNDYWGH 248

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+V+  L+  L           R GGEEF      ++  EA  LA+ LR+++E  Q+
Sbjct: 249 LRGDRVLRELAGLLRCNLRQSDVPARYGGEEFVVLLPDTASGEAGQLADKLRRLVE-EQL 307

Query: 209 NISSGPSIH-ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  G     +T + G+A        +  ++  AD+ LY  K +GRN+VV
Sbjct: 308 VLEEGEERRLVTATIGVAAYPADGNNLEELLAVADRRLYAGKTAGRNQVV 357


>gi|325928728|ref|ZP_08189898.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
 gi|325540896|gb|EGD12468.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
          Length = 553

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 82/166 (49%), Gaps = 10/166 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG------SYNE-KLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q S  D L+GL N      +L       +  E  LS++  D+D+FK+ ND  GH  GD
Sbjct: 380 LRQQSIRDPLTGLYNRRYLEETLSHELARCTRRELPLSVLMLDVDHFKRFNDLHGHSGGD 439

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+A + + L+          R GGEE            A ++A  LR  IE  Q+ +  
Sbjct: 440 RVLAAIGELLLAQTRGEDICCRYGGEELTIILPEVDLPTACMMAEKLRAGIEALQV-MGD 498

Query: 213 GPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  +  +T S G A    H   +++++ RAD ALY AK+ GRN+VV
Sbjct: 499 GVCLPKVTASFGAASFPAHASTVASLLQRADAALYRAKQGGRNQVV 544


>gi|257059699|ref|YP_003137587.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Cyanothece
           sp. PCC 8802]
 gi|256589865|gb|ACV00752.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Cyanothece
           sp. PCC 8802]
          Length = 872

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 58/159 (36%), Positives = 80/159 (50%), Gaps = 13/159 (8%)

Query: 107 DCLSGLLNHSAFIS-------SLGSYNEKL-SIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+GL N    I        S GS ++KL +I+F D D FK IND  GH  GD ++  +
Sbjct: 440 DPLTGLPNRRLLIRQIQQVNRSQGSESQKLIAILFLDFDRFKTINDGLGHLAGDHLLMQI 499

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIH 217
           S +L       + VGR+GG+EFA      S+ QE    A+ L+K +  SQ        I+
Sbjct: 500 SRRLQEQSQPQILVGRVGGDEFALCLNQISQAQEVTAFADALQKHL--SQPFYWQNQEIY 557

Query: 218 ITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNR 254
           IT S GIA  C  +      ++  AD A+Y AK+ G  R
Sbjct: 558 ITASIGIALECVGQNFQAGELLRYADIAMYRAKELGTAR 596


>gi|153833146|ref|ZP_01985813.1| putative virulence-mediating protein VirC [Vibrio harveyi HY01]
 gi|148870576|gb|EDL69484.1| putative virulence-mediating protein VirC [Vibrio harveyi HY01]
          Length = 650

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 10/164 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           ++Q +  D L+ + N     S L      S + K ++   DID+FK  ND +GH +GDK+
Sbjct: 481 LAQQNTTDPLTKVHNRRYLPSWLDQMARRSPDRKFALAVIDIDHFKAFNDQYGHDLGDKM 540

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  L         + R GGEEF          + A   + LR  +EN+ + + S  
Sbjct: 541 LLHVARILDEATRAGDLLVRWGGEEFVLLFEIRHADDCAKTLDRLRLAVENNNLEVDS-E 599

Query: 215 SIHITISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           S+  TIS G    ++ +  K+      + ADQALY AK+SGRN+
Sbjct: 600 SLGATISLGAVNELSAQSIKQEWDQWFFAADQALYDAKQSGRNQ 643


>gi|118580254|ref|YP_901504.1| diguanylate cyclase [Pelobacter propionicus DSM 2379]
 gi|118502964|gb|ABK99446.1| diguanylate cyclase [Pelobacter propionicus DSM 2379]
          Length = 341

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 7/125 (5%)

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK+IND++GH  GD+V+  +S  +   F    ++ R GGEEF      + E +A  
Sbjct: 200 DLDNFKRINDSWGHLYGDEVLLLISQLMQGHFRESDYLFRFGGEEFVIIIRAAHEDQAEQ 259

Query: 195 LANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
                R+ +E         P I  +TIS G+A+       +T++  AD+ALY AKK+GRN
Sbjct: 260 AFERFRRAVEEHIF-----PQIGQVTISIGVAKMDASIFTATLLDHADKALYHAKKNGRN 314

Query: 254 RVVCF 258
           + VCF
Sbjct: 315 Q-VCF 318


>gi|296136287|ref|YP_003643529.1| diguanylate cyclase with PAS/PAC sensor [Thiomonas intermedia K12]
 gi|295796409|gb|ADG31199.1| diguanylate cyclase with PAS/PAC sensor [Thiomonas intermedia K12]
          Length = 440

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 89/173 (51%), Gaps = 13/173 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG---SYNEK----LSIVFFDIDYFKQINDNFGHPVG 151
           R+ +++ ID L+ + N  A +++L    + +E+    LS+   DID FK +ND FGH VG
Sbjct: 259 RLEKMASIDDLTQIPNRRAGMAALAQQIALSERSGGALSVGVLDIDAFKSVNDRFGHAVG 318

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQIN 209
           D+V+  ++  L         V R GGEEF     A G    +A           ++ + +
Sbjct: 319 DEVLHQVARLLRQTLRPGDLVYRSGGEEFVLILPAAGRETADAIAADIHAAFAAKDWEGD 378

Query: 210 ISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +S  P   +T+S G+A     +P +  ++ +AD ALY AK+SGRNR     D+
Sbjct: 379 LSV-PG--VTVSIGLASYPQDQPQLHKLLDQADLALYRAKESGRNRTCRAGDL 428


>gi|225388780|ref|ZP_03758504.1| hypothetical protein CLOSTASPAR_02516 [Clostridium asparagiforme
           DSM 15981]
 gi|225045162|gb|EEG55408.1| hypothetical protein CLOSTASPAR_02516 [Clostridium asparagiforme
           DSM 15981]
          Length = 335

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 7/158 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           +R D L+ L+N     S + +  +K    +++  D+D FKQ+ND  GHP GD+V++ L++
Sbjct: 169 ARYDYLTDLMNRPFLESEVQALMQKKPYGAMMMMDVDDFKQVNDRNGHPFGDQVLSLLAE 228

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHIT 219
            L   F T    GR+GG+EF     G  E E        R    +        G    I+
Sbjct: 229 SLKASF-TGCLSGRIGGDEFLVYT-GGDEPEMEEFLEMARAFCRDWDCRQKRLGLDRRIS 286

Query: 220 ISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           I  GIA    H +   ++   AD+ALY++K+SG++ + 
Sbjct: 287 ICMGIALYPQHGDNYESLWQNADKALYISKRSGKSSIA 324


>gi|163781840|ref|ZP_02176840.1| sensory box/GGDEF family protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883060|gb|EDP76564.1| sensory box/GGDEF family protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 959

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 25/181 (13%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +++  D L+GL N +     + S          K++I+F D+DYFK +ND  GH VGD
Sbjct: 529 LKKMAYFDPLTGLPNRTLLRDRIESAIHFANRNGSKVAILFIDLDYFKTVNDTLGHDVGD 588

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
           +++  ++ +L  VF     V R GG+EF A               DL+ +++ ++  +S 
Sbjct: 589 RILVQVAKRLSSVFRETDTVARFGGDEFVAVIPD---------VRDLKDVVQVAERILSL 639

Query: 212 -------SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                  +G  I+++ S GIA    + E  + +I  AD A+Y AK+ G++    F++  N
Sbjct: 640 FSTPFEANGEDIYLSASVGIAVYPDNGENPTELIKNADMAMYRAKEEGKSNFSFFTEEMN 699

Query: 264 N 264
           +
Sbjct: 700 S 700


>gi|34497037|ref|NP_901252.1| GGDEF family protein [Chromobacterium violaceum ATCC 12472]
 gi|34102894|gb|AAQ59258.1| probable GGDEF family protein [Chromobacterium violaceum ATCC
           12472]
          Length = 427

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 13/176 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NE----KLSIVFFDIDYFKQ 141
           S +KE   S  R+  L+  D L+GL N + F   L  +  NE    +L+I+F D++ FKQ
Sbjct: 239 SGMKE---SERRLHALAFFDGLTGLANRALFGERLRWHLQNEPAGGRLAILFLDLNGFKQ 295

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD+V+  ++ +L           R GG+EFA    G ++   A+LA  LR+
Sbjct: 296 VNDLLGHEAGDQVLREVARRLQAGCRPGELAARWGGDEFAVLLPGVADD--AVLAARLRE 353

Query: 202 IIENSQI-NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
           + E ++      G  + ++ S G A      E    +I  AD+A+Y AK  G  +V
Sbjct: 354 LREAARAERWGGGRWLRVSASLGAAVYPESAEDAERLIQLADRAMYRAKSEGGGQV 409


>gi|88857522|ref|ZP_01132165.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Pseudoalteromonas
           tunicata D2]
 gi|88820719|gb|EAR30531.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Pseudoalteromonas
           tunicata D2]
          Length = 908

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 94/181 (51%), Gaps = 25/181 (13%)

Query: 98  NRISQLSRI----DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNF 146
            R  +L R     D L+GL N +     L +        N+++++++ D+D FK IND+ 
Sbjct: 471 KRTQELMRFQANFDHLTGLPNRTLVFERLTNSVKLAKRANQEMAVLYIDLDMFKLINDSK 530

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIE- 204
           GH VGD++I  ++D+   V  +   + R+GG+EF   A   + E  A ++A+ L+ +++ 
Sbjct: 531 GHLVGDELIKQVADRFKSVIRSSDILARVGGDEFVIIANAITPEYSAELVADKLQAVLKV 590

Query: 205 -----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                N +++ SS   I +    GI          T++ +++QA+Y AK+ GR +   ++
Sbjct: 591 PFMIGNERLHTSSSLGIALYPFDGI-------EAGTLLLKSEQAMYQAKELGRQKSHFYT 643

Query: 260 D 260
           D
Sbjct: 644 D 644


>gi|326343291|gb|EGD67058.1| hypothetical protein ECoA_02734 [Escherichia coli O157:H7 str.
           1044]
          Length = 652

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 210 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 269

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 270 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMAS--- 326

Query: 201 KIIENSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 327 RILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 386

Query: 259 S 259
           +
Sbjct: 387 T 387


>gi|262089630|gb|ACY24727.1| PAS-PAS-GGDEF-EAL domain protein [uncultured organism]
          Length = 838

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 61/180 (33%), Positives = 83/180 (46%), Gaps = 18/180 (10%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S   I  L+  D L+ L N   F       I S   Y+ KL++ F D+D FK IND  GH
Sbjct: 391 SEQHIHFLATHDSLTSLPNRFMFSQILNLAIESAHRYHRKLAVFFIDLDRFKNINDTLGH 450

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENS 206
             GD ++  ++ +L         VGRLGG+EF        ++EQ A +    L   I   
Sbjct: 451 EAGDFLLCEMAARLKQCLRASDVVGRLGGDEFVILLPEPENTEQIATVAQKILSASINPI 510

Query: 207 QINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS-DIE 262
            IN   G    +T S GI    E    E   T++  AD A+Y AK+ G+N    +S DIE
Sbjct: 511 DIN---GQECRVTASIGICVYPEDGKDE--QTLMKNADIAMYRAKEEGKNNYQFYSPDIE 565


>gi|297564823|ref|YP_003683795.1| diguanylate cyclase [Meiothermus silvanus DSM 9946]
 gi|296849272|gb|ADH62287.1| diguanylate cyclase [Meiothermus silvanus DSM 9946]
          Length = 570

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 15/160 (9%)

Query: 107 DCLSGLLNHSAF------ISSLGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN          +  L  ++ K +S+   D+D+FK++ND++GH  GD+V+  L+
Sbjct: 401 DPLTGLLNRRGLERHIHKLMDLARHSGKPISVAMLDLDHFKRVNDSYGHDNGDRVLQALA 460

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHI 218
             L     +     R GGEEFA    G+  Q+A ++   LR+I E    + +   P    
Sbjct: 461 GVLRRHLRSEDLAVRWGGEEFALLLYGAGLQDAYLV---LRRIQEELRALRVEPIPWA-F 516

Query: 219 TISAGIAERCHKEPISTI---IYRADQALYVAKKSGRNRV 255
           T+SAGI        ++ +   + +AD AL  AK +GR+RV
Sbjct: 517 TLSAGITGGQVPPSLAVLEDWLLQADWALLQAKDAGRDRV 556


>gi|119471884|ref|ZP_01614192.1| sensory box/GGDEF family protein [Alteromonadales bacterium TW-7]
 gi|119445257|gb|EAW26547.1| sensory box/GGDEF family protein [Alteromonadales bacterium TW-7]
          Length = 329

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 12/173 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148
            Y  +  LS++D L+G+ N      ++           + LS +  DIDYFK  NDNFGH
Sbjct: 156 KYKVLETLSKLDHLTGIANRGTLEKTIHKDWQTCLMNKQPLSFILIDIDYFKLFNDNFGH 215

Query: 149 PVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
             GDK +  ++  +     +    V R GGEEFA     S    A ++A  ++  I N  
Sbjct: 216 VKGDKCLQKVAKTIEECLPSKDSLVARYGGEEFAVVLPRSHISNAEMIAKRIQDRILNLN 275

Query: 208 INISSGP-SIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
                 P ++ I++S G+A   + +      ++  AD ALY AK  GRN ++C
Sbjct: 276 FREIGLPDNVKISVSQGLACEYNNQYRASEALMCAADTALYRAKSQGRN-MIC 327


>gi|148259506|ref|YP_001233633.1| diguanylate cyclase/phosphodiesterase [Acidiphilium cryptum JF-5]
 gi|146401187|gb|ABQ29714.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Acidiphilium cryptum JF-5]
          Length = 742

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 18/200 (9%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-----ISSLGSYNEKLSI 131
           T++  L  +    L+ L  S  RI  L+  D L+GL N + F      +        +++
Sbjct: 282 TVAGFLAVVRSRSLR-LQASEVRIHHLAFHDPLTGLPNRTFFNESADAALAALSGTSIAL 340

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +F D+D FKQ+ND  GHP GD +I     +L  +      V R+GG+EF     G + +E
Sbjct: 341 LFLDLDRFKQVNDTLGHPAGDTLIREFGARLRALVREEDMVARVGGDEFTVMLAGVAGRE 400

Query: 192 AAILANDLRK----IIENSQINIS-SGPSIHITISAGIA-ERCHKEPISTIIYRADQALY 245
                 D+ K    I+E+ +     +G  + + +S G+A    H      ++ +AD ALY
Sbjct: 401 ------DVEKLCARIVESVRTPFDLNGNRVFVGLSIGVALAPDHGTDRIDLLRKADIALY 454

Query: 246 VAKKSGRNRVVCFSDIENNT 265
            AK +GR R   F  + ++ 
Sbjct: 455 SAKSTGRGRFAFFDPVMDDA 474


>gi|330987546|gb|EGH85649.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 1250

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 11/177 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEK----LSIVFFDIDYFK 140
           S + E   S +RI +L+  D L+ L N + F   L S   + E+    + ++F D+D FK
Sbjct: 799 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQAWVVLMFLDLDRFK 858

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDL 199
            IND+ GH  GD+++  ++ +L+    +   V R+GG+EF       + +EAA+  A  +
Sbjct: 859 PINDSLGHAAGDRMLQEMATRLLACVSSDDTVARMGGDEFTLLLQPDTSREAALTRAIHV 918

Query: 200 RKIIENSQIN--ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
            + I  S +   +  G    +T S GIA      + +S ++  AD A+Y AK+ G+N
Sbjct: 919 AERILTSLVTPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKN 975


>gi|330888757|gb|EGH21418.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 1258

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 11/177 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEK----LSIVFFDIDYFK 140
           S + E   S +RI +L+  D L+ L N + F   L S   + E+    + ++F D+D FK
Sbjct: 807 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQAWVVLMFLDLDRFK 866

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDL 199
            IND+ GH  GD+++  ++ +L+    +   V R+GG+EF       + +EAA+  A  +
Sbjct: 867 PINDSLGHAAGDRMLQEMATRLLACVSSDDTVARMGGDEFTLLLQPDTSREAALTRAIHV 926

Query: 200 RKIIENSQIN--ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
            + I  S +   +  G    +T S GIA      + +S ++  AD A+Y AK+ G+N
Sbjct: 927 AERILTSLVTPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKN 983


>gi|320322619|gb|EFW78712.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. glycinea str. B076]
          Length = 1245

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 11/177 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEK----LSIVFFDIDYFK 140
           S + E   S +RI +L+  D L+ L N + F   L S   + E+    + ++F D+D FK
Sbjct: 794 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQAWVVLMFLDLDRFK 853

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDL 199
            IND+ GH  GD+++  ++ +L+    +   V R+GG+EF       + +EAA+  A  +
Sbjct: 854 PINDSLGHAAGDRMLQEMATRLLACVSSDDTVARMGGDEFTLLLQPDTSREAALTRAIHV 913

Query: 200 RKIIENSQIN--ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
            + I  S +   +  G    +T S GIA      + +S ++  AD A+Y AK+ G+N
Sbjct: 914 AERILTSLVTPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKN 970


>gi|297539482|ref|YP_003675251.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297258829|gb|ADI30674.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylotenera sp. 301]
          Length = 1169

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 85/169 (50%), Gaps = 11/169 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I + +  D L+GL N   F       I      N +L+++F D+D FK+INDNFGH VGD
Sbjct: 739 IWKQANFDFLTGLPNRQMFHDRLNQEIKKTNRNNLQLALLFIDLDRFKEINDNFGHDVGD 798

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++   + +L         + RLGG+EF    LG    + +++   ++ I+         
Sbjct: 799 AMLKEAAIRLNKCVRETDTLSRLGGDEF-TVILGQL-NDLSVIERAVQDILNKMTEAFYL 856

Query: 213 GPS-IHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFS 259
           G   ++I+ S GIA        + T++  ADQA+Y AK+ GRNR   F+
Sbjct: 857 GDEVVYISASVGIALYPDDASTNETLLTSADQAMYAAKQLGRNRYHYFT 905


>gi|289628325|ref|ZP_06461279.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289650123|ref|ZP_06481466.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330869001|gb|EGH03710.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 1250

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 11/177 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEK----LSIVFFDIDYFK 140
           S + E   S +RI +L+  D L+ L N + F   L S   + E+    + ++F D+D FK
Sbjct: 799 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQAWVVLMFLDLDRFK 858

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDL 199
            IND+ GH  GD+++  ++ +L+    +   V R+GG+EF       + +EAA+  A  +
Sbjct: 859 PINDSLGHAAGDRMLQEMATRLLACVSSDDTVARMGGDEFTLLLQPDTSREAALTRAIHV 918

Query: 200 RKIIENSQIN--ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
            + I  S +   +  G    +T S GIA      + +S ++  AD A+Y AK+ G+N
Sbjct: 919 AERILTSLVTPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKN 975


>gi|326315979|ref|YP_004233651.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372815|gb|ADX45084.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 1120

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 83/173 (47%), Gaps = 24/173 (13%)

Query: 99  RISQLSRIDCLSGLLNHSAFI------SSLGSYNEKL-SIVFFDIDYFKQINDNFGHPVG 151
           +I  L+  D L+GL N    +       +    NEKL +++F D+D FK +ND  GH +G
Sbjct: 669 QIELLAFFDALTGLPNRRLLLDRLQRAGAACQRNEKLGALLFIDLDNFKDLNDTLGHDMG 728

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEF-----------AAAALGSSEQEAAILANDLR 200
           D+++  ++ +L     T   V R GG+EF           A AAL  +EQ A  L   L 
Sbjct: 729 DRLLVQVAQRLQECVRTSDTVARFGGDEFVVMLEGLDADTAQAAL-QAEQVAEKLLAQLN 787

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +  E       S PSI IT+         +  +  ++ RAD A+Y AK +GRN
Sbjct: 788 RPFEMGAQQHYSTPSIGITLFGD-----QRRSVDELLKRADLAMYQAKAAGRN 835


>gi|266620868|ref|ZP_06113803.1| GGDEF/response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
 gi|288867447|gb|EFC99745.1| GGDEF/response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
          Length = 379

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 70/142 (49%), Gaps = 20/142 (14%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGD---KVIAFL-----SDQLVVVFGTPMFVGRLGGEEF 180
           +S +  DIDYFKQ ND +GH  GD   K IA +      DQ V          R GGEEF
Sbjct: 247 ISCMMLDIDYFKQFNDRYGHISGDICLKKIAEMIRECCQDQNVAAI-------RYGGEEF 299

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTII 237
                  ++ EA  +A  +RK I   +  I+      +TIS G+    H E    +  +I
Sbjct: 300 FICLFQWNQDEAVEMAEKIRKRIAECRFKINEEEG-AVTISIGVYT-WHGEGKVQMDDLI 357

Query: 238 YRADQALYVAKKSGRNRVVCFS 259
             +D+ALY AKK+GRNRV   S
Sbjct: 358 RLSDKALYQAKKNGRNRVEVLS 379


>gi|262401649|ref|ZP_06078215.1| hypothetical protein VOA_003199 [Vibrio sp. RC586]
 gi|262352066|gb|EEZ01196.1| hypothetical protein VOA_003199 [Vibrio sp. RC586]
          Length = 684

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 83/173 (47%), Gaps = 17/173 (9%)

Query: 104 SRIDCLSGLLNHSAFISSLGS--YNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+GL N   F   L     NE  L +++ DID FK IND+ GH +GDKVI  ++ 
Sbjct: 256 AHIDNLTGLYNRHGFTKRLEQCIQNETPLVLLYLDIDNFKNINDSLGHHIGDKVIKEVAA 315

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------ 214
           +L  +      +G LGG+EF    L   E       N   +++ +  I++ + P      
Sbjct: 316 RLKRLLPQQAILGHLGGDEF-GLILPEPEH------NRSEEMLADRIISLINQPFDLHHF 368

Query: 215 SIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           S  +  S G +           ++  AD A+Y AK+ GRNR++ F+D  N   
Sbjct: 369 SKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEA 421


>gi|257482140|ref|ZP_05636181.1| sensory box protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 1250

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 11/177 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEK----LSIVFFDIDYFK 140
           S + E   S +RI +L+  D L+ L N + F   L S   + E+    + ++F D+D FK
Sbjct: 799 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQAWVVLMFLDLDRFK 858

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDL 199
            IND+ GH  GD+++  ++ +L+    +   V R+GG+EF       + +EAA+  A  +
Sbjct: 859 PINDSLGHAAGDRMLQEMATRLLACVSSDDTVARMGGDEFTLLLQPDTSREAALTRAIHV 918

Query: 200 RKIIENSQIN--ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
            + I  S +   +  G    +T S GIA      + +S ++  AD A+Y AK+ G+N
Sbjct: 919 AERILTSLVTPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKN 975


>gi|238763587|ref|ZP_04624548.1| hypothetical protein ykris0001_8030 [Yersinia kristensenii ATCC
           33638]
 gi|238698219|gb|EEP90975.1| hypothetical protein ykris0001_8030 [Yersinia kristensenii ATCC
           33638]
          Length = 1113

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 19/173 (10%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++S  +  D L+GL N + F + L +       ++++ ++ F D+DYFK +ND  GHP G
Sbjct: 683 KLSHSASHDNLTGLPNRANFDNKLKAAIQKSVDFDQQHALAFLDLDYFKAVNDTAGHPAG 742

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++  LS  +         V RLGG+EF    L  +   A  +   L  II        
Sbjct: 743 DALLKELSQLMRQHLRNSDCVARLGGDEFGLLMLNCTLPHAKAITQGLVSIINGYHFYWE 802

Query: 212 S-----GPSIHIT-ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 G S  +T IS+  ++R      S I+ +AD A Y AK SGR +V  +
Sbjct: 803 DKLYRIGASAGVTQISSSNSQR------SEIMAQADIACYTAKHSGRGQVYLY 849


>gi|194437128|ref|ZP_03069227.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli 101-1]
 gi|253773714|ref|YP_003036545.1| RNase II stability modulator [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254161365|ref|YP_003044473.1| RNase II stability modulator [Escherichia coli B str. REL606]
 gi|194424111|gb|EDX40099.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli 101-1]
 gi|242377064|emb|CAQ31790.1| modulator of RNase II stability [Escherichia coli BL21(DE3)]
 gi|253324758|gb|ACT29360.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973266|gb|ACT38937.1| modulator of Rnase II stability [Escherichia coli B str. REL606]
 gi|253977480|gb|ACT43150.1| modulator of Rnase II stability [Escherichia coli BL21(DE3)]
 gi|323962503|gb|EGB58084.1| EAL domain-containing protein [Escherichia coli H489]
 gi|323973472|gb|EGB68658.1| EAL domain-containing protein [Escherichia coli TA007]
          Length = 661

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINHADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+   
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMAS--- 335

Query: 201 KIIENSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 336 RILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 S 259
           +
Sbjct: 396 T 396


>gi|170735281|ref|YP_001774395.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia cenocepacia MC0-3]
 gi|169821319|gb|ACA95900.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia cenocepacia MC0-3]
          Length = 935

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 16/174 (9%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
           S  RI +L+  D L+GL N    +S   S            +++F D++ FKQ+ND  GH
Sbjct: 498 SKERIRRLAFYDGLTGLPNRQLLMSQAESVLAAAVASQHSFAVMFVDLNSFKQVNDTLGH 557

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIE 204
             GD +++ ++ +L +       VGRL G+EF    + A +  +   A    N LR+ ++
Sbjct: 558 AAGDGLLSEVAQRLKIDLRDTDIVGRLSGDEFVIVLSPADIELTLDFAERTMNRLRQPVQ 617

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            S  N+    S+ I I        H E I  ++  AD A+Y AK +G +    F
Sbjct: 618 ISDTNLRPAASMGIAIFPQ-----HGESIGALMQHADMAMYEAKFAGHHEYRVF 666


>gi|152992060|ref|YP_001357781.1| hypothetical protein SUN_0464 [Sulfurovum sp. NBC37-1]
 gi|151423921|dbj|BAF71424.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 607

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 12/176 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +++ ++ LS    L+  L H+  I     +++  +++F D+D FK IND +GH VGDKV+
Sbjct: 432 THDPLTGLSNRLVLNDRLEHA--IEHAKRFDKCFALIFCDLDNFKPINDTYGHSVGDKVL 489

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++D +         + R GG+EF        E E+     D  + + N    I +G  
Sbjct: 490 KHIADIMKSTLRKNDTICRYGGDEFVILIEELKEFESLETILDKIRTLTNQSFTI-NGIE 548

Query: 216 IHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           +++ IS G A      R  +E +S     ADQA+Y AKK G+N +  F   EN  C
Sbjct: 549 LNVGISIGAAVYPNDARTSEEILSV----ADQAMYEAKKEGKNSISFFGSYENLVC 600


>gi|221068411|ref|ZP_03544516.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           KF-1]
 gi|220713434|gb|EED68802.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           KF-1]
          Length = 315

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 18/179 (10%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           S+ KEL +       LS  D L+ + N   F +S     E+       LS++ FD+D+FK
Sbjct: 137 SLQKELEV-------LSFKDGLTSIANRRCFDTSFEREWERTRSDGKPLSMLLFDVDFFK 189

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           Q ND +GH  GDK +  ++  L +   G    V R GGEEF      +  + A  +A   
Sbjct: 190 QYNDLYGHIQGDKCLVDIAQTLRLALDGQRDLVARYGGEEFVVLLPEADAETAQKVAERC 249

Query: 200 RKIIENSQINISSGP---SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +++I+   I  +  P    + ++I AG       +  +  I   D+ LY AK  GR+R+
Sbjct: 250 QRLIQKQSIVHALSPHGRRVTMSIGAGTVLPAEHDRPAGFIEAVDRQLYAAKNKGRHRI 308


>gi|91792378|ref|YP_562029.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91714380|gb|ABE54306.1| diguanylate cyclase/phosphodiesterase [Shewanella denitrificans
           OS217]
          Length = 678

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 17/185 (9%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
             IL +   + N++ +++  D L+GL N +  + +L         +    +I F D+D F
Sbjct: 232 NQILLQFSQAQNKLRKMATRDPLTGLPNRALLLETLSVTIQRSRVHKRSFAIFFIDLDRF 291

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILAN 197
           K +ND+ GH +GD+ +A ++  L    G    V RLGG+EF   A  + +  Q A  +  
Sbjct: 292 KNVNDSLGHTIGDQFLARIARILERGIGDKGSVARLGGDEFVILADEIQTPSQAADFVGK 351

Query: 198 DLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            L ++  N+ I ++   SIH   S GI+   + C       +I  AD A+Y AK +G N+
Sbjct: 352 LLSQL--NTPIQLNEH-SIHPAASIGISIYPDDCAS--AEDLIRHADIAMYSAKAAGSNQ 406

Query: 255 VVCFS 259
              F 
Sbjct: 407 WAFFK 411


>gi|67921586|ref|ZP_00515104.1| GGDEF [Crocosphaera watsonii WH 8501]
 gi|67856698|gb|EAM51939.1| GGDEF [Crocosphaera watsonii WH 8501]
          Length = 192

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 89/180 (49%), Gaps = 21/180 (11%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           KEL  +  ++  L+ +D L+ L N   F          LG   + +S++  DIDYFK  N
Sbjct: 6   KELENAKEKLEYLATVDELTQLYNRRYFNEYLDQEWRRLGRERKFISLIVCDIDYFKLYN 65

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEF-----AAAALGSSEQEAAILAN 197
           D + H  GDK +  ++  L  +   P   V R GGEEF        +LG +E+ A  L N
Sbjct: 66  DYYHHQAGDKCLYQVAQCLKNLIKRPADLVARFGGEEFIIILSNTNSLG-AEKVALKLCN 124

Query: 198 DLRKI-IENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNR 254
            +  + I + +   SS    H+T+S G+A    +  +S   +I  AD+ALY AK  GRNR
Sbjct: 125 AVAALDIPHHRSKCSS----HVTLSLGVATTMPRVKVSPQKLIQAADKALYKAKDRGRNR 180


>gi|313202386|ref|YP_004041044.1| PAS/PAC sensor-containing diguanylate cyclase [Methylovorus sp.
           MP688]
 gi|312441702|gb|ADQ85808.1| diguanylate cyclase with PAS/PAC sensor [Methylovorus sp. MP688]
          Length = 323

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 99/211 (46%), Gaps = 20/211 (9%)

Query: 62  EYILVENLSLVIISIT--ISLLLGYI-----SGSILKELFISYNRISQLSRIDCLSGLLN 114
           EYI + ++  V+ +    +  L+G++          ++L      + +LS  D L+ + N
Sbjct: 108 EYIWIRDVVHVLRNADGEVEALIGFMFDISERKKTEEKLLQLQKELEELSFQDGLTRVAN 167

Query: 115 HSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
              F S       +    ++ LS++  DIDYFKQ ND++GH  GD  +  ++ +++   G
Sbjct: 168 RRMFDSIIQVEWTNARRNSQPLSLIMLDIDYFKQYNDHYGHIQGDDCLKQVA-EILSSAG 226

Query: 168 TPM--FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS---GPSIHITISA 222
           T    F  R GGEEF      +    A  +A   RK+I  +QI  +    GP + I++  
Sbjct: 227 TRANDFFARFGGEEFVLVLPQTDSDAAKKIAERCRKLIFKAQIPHAKSLIGPVLTISVGV 286

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           G     +++     I   DQ LY AK+ GRN
Sbjct: 287 GTVIPGYQDESVDFINSVDQRLYQAKQLGRN 317


>gi|269961223|ref|ZP_06175590.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833984|gb|EEZ88076.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 641

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 86/173 (49%), Gaps = 11/173 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVG 151
           I   R++  +  D L+GL N S  +  L   ++      I+F D+D FK +ND +GH +G
Sbjct: 469 IELKRLNYQANHDPLTGLANRSKAMRRLQEKHDVGASQHILFVDLDGFKAVNDKYGHAIG 528

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  ++ +L+        V RL G+EF  A   ++  E        ++IIE+      
Sbjct: 529 DQLLKVVAQRLMNCVARRDLVSRLAGDEFLIAVRDATSCEPIA-----QRIIESLSKPFQ 583

Query: 212 SGP-SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            G  +  I+ S G++   R     +   I  AD A+Y+AK +G+N+  C ++I
Sbjct: 584 FGDVTCDISASIGVSYWSREDGSTLDEKINEADMAMYLAKNNGKNQFHCLNEI 636


>gi|261250871|ref|ZP_05943445.1| conserved hypothetical protein [Vibrio orientalis CIP 102891]
 gi|260937744|gb|EEX93732.1| conserved hypothetical protein [Vibrio orientalis CIP 102891]
          Length = 379

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 82/154 (53%), Gaps = 5/154 (3%)

Query: 107 DCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D +SG+ N      ++  + + +E  +++  DID FK IND  GH +GD++I +++  + 
Sbjct: 219 DSISGIANRLGVDEYLYRVLNQSESKAVLLLDIDKFKLINDTQGHLIGDELIKWVAINIE 278

Query: 164 VVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITIS 221
                 M FVGR GG+EF        +  +  +A ++R+ I ++ +  S  P+I  +T S
Sbjct: 279 RSVRKDMDFVGRYGGDEFIIILSRVDKYTSVKVAENIREKISSTCVPDSVSPAISSVTCS 338

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G+         +T++  AD ALY AK+ GRN V
Sbjct: 339 IGVVSFFGLSDRNTVVSTADAALYQAKRDGRNCV 372


>gi|221197641|ref|ZP_03570688.1| diguanylate cyclase [Burkholderia multivorans CGD2M]
 gi|221204314|ref|ZP_03577332.1| diguanylate cyclase [Burkholderia multivorans CGD2]
 gi|221176480|gb|EEE08909.1| diguanylate cyclase [Burkholderia multivorans CGD2]
 gi|221184195|gb|EEE16595.1| diguanylate cyclase [Burkholderia multivorans CGD2M]
          Length = 522

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 88/196 (44%), Gaps = 17/196 (8%)

Query: 80  LLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------ 128
           L LG++  S+L     ++   +   +  L+R D L+GL N      +L     +      
Sbjct: 315 LALGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRMLDVTLAREWRRAARSQH 374

Query: 129 -LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALG 186
            LS++F D+D+FK+ ND+ GH  GD  +A +   +      P  +  R GGEEF      
Sbjct: 375 ALSLLFVDVDHFKRYNDSQGHQAGDDALAAVGRCIAGCLRRPADYAARYGGEEFVVILPD 434

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQA 243
                A  +A  +R  I    I         +T S G+A  C  +    +   +  AD A
Sbjct: 435 IGSDGAVTIAETIRTSILELGIRHDGSAFGCLTASIGVAT-CRPDRDDNMHAALKLADDA 493

Query: 244 LYVAKKSGRNRVVCFS 259
           LY AK++GRNRVV  +
Sbjct: 494 LYRAKETGRNRVVVLT 509


>gi|254423463|ref|ZP_05037181.1| GGDEF domain protein [Synechococcus sp. PCC 7335]
 gi|196190952|gb|EDX85916.1| GGDEF domain protein [Synechococcus sp. PCC 7335]
          Length = 690

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 98/198 (49%), Gaps = 31/198 (15%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSY 125
           +S ++  LL   S  + +E    +N +      D L+GL N S F+  L         + 
Sbjct: 185 LSTSLHRLLKVQSALLKREATSRHNALH-----DPLTGLPNRSYFLQRLEQSVQLTQRNS 239

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           N + +++F D+D FK +ND  GH VGD+++  +++++  +      V RLGG+EFA    
Sbjct: 240 NHQYAVLFIDLDSFKPVNDTLGHEVGDQLLTHVANRIKRLLRKSDLVARLGGDEFAVLLD 299

Query: 186 GSSEQEAAILANDLRKI---------IENSQINISSGPSIHITISAGIAERCHKEPISTI 236
             + +  AI A  +R+I         + N Q++IS+  SI I +S     +   +   ++
Sbjct: 300 DIAGKNEAITA--VRRIQWHLEQPFTVANRQLSISA--SIGIALS-----QLGYQQAESV 350

Query: 237 IYRADQALYVAKKSGRNR 254
           +  AD A+Y AK+  + R
Sbjct: 351 LRDADTAMYQAKRLAKER 368


>gi|146338192|ref|YP_001203240.1| putative diguanylate cyclase [Bradyrhizobium sp. ORS278]
 gi|146190998|emb|CAL75003.1| Putative diguanylate cyclase (GGDEF) precursor [Bradyrhizobium sp.
           ORS278]
          Length = 502

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 21/175 (12%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +R+ +L+  D L+GL N   F  ++             L ++  D D+FK  ND  GH  
Sbjct: 324 SRLERLATTDPLTGLKNRRKFDETIEIEWRRAQRAQVPLGLLMIDADHFKSYNDTHGHQA 383

Query: 151 GDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GD+V+  ++   V +  +    G    R GGEEFA    G++E++A  +A  +R      
Sbjct: 384 GDQVLVGIA---VCISDSVRRAGDCAARYGGEEFAVLLPGTAEKDALHVAETIR-----I 435

Query: 207 QINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++ + +G + + +IS G+A          S+++  AD+ALY+AK +GRNR +  +
Sbjct: 436 KVALWAGEAGNASISIGVASVTPTRDADWSSLLNAADRALYMAKAAGRNRCISVA 490


Searching..................................................done


Results from round 2




>gi|254781079|ref|YP_003065492.1| diguanylate cyclase [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040756|gb|ACT57552.1| diguanylate cyclase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 266

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 266/266 (100%), Positives = 266/266 (100%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60
           MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG
Sbjct: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS
Sbjct: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF
Sbjct: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
           AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA
Sbjct: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240

Query: 241 DQALYVAKKSGRNRVVCFSDIENNTC 266
           DQALYVAKKSGRNRVVCFSDIENNTC
Sbjct: 241 DQALYVAKKSGRNRVVCFSDIENNTC 266


>gi|315122462|ref|YP_004062951.1| diguanylate cyclase [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495864|gb|ADR52463.1| diguanylate cyclase [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 259

 Score =  295 bits (757), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 206/258 (79%), Positives = 234/258 (90%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60
           MT+ LKD L IWL +EKNLESFSP+ FM YFSIFF+IFI ++IFI N+ LFYIGL PFYG
Sbjct: 1   MTKYLKDLLRIWLLYEKNLESFSPNAFMTYFSIFFTIFITSIIFITNVVLFYIGLIPFYG 60

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +EYIL+EN+SLVIISI ISL+LGYISGSILKELF++YN++S+LSRIDCLSGLLNHSAFIS
Sbjct: 61  VEYILLENISLVIISIVISLILGYISGSILKELFVAYNKMSRLSRIDCLSGLLNHSAFIS 120

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           +LGS +EKLSIVFFDID FK IND+FGHPVGDKVIAFLS++LV VF +PMFVGRLGGEEF
Sbjct: 121 NLGSCSEKLSIVFFDIDNFKFINDSFGHPVGDKVIAFLSEKLVYVFQSPMFVGRLGGEEF 180

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
           AAAALG SE+EAAILANDLRKIIENS I ISS   + ITISAGI+ERC+KEPISTI+Y+A
Sbjct: 181 AAAALGLSEKEAAILANDLRKIIENSFIKISSSQFVQITISAGISERCNKEPISTIVYQA 240

Query: 241 DQALYVAKKSGRNRVVCF 258
           DQALYVAKK GRNRVVCF
Sbjct: 241 DQALYVAKKLGRNRVVCF 258


>gi|15605636|ref|NP_213011.1| hypothetical protein aq_035 [Aquifex aeolicus VF5]
 gi|2982791|gb|AAC06416.1| hypothetical protein aq_035 [Aquifex aeolicus VF5]
          Length = 431

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 58/167 (34%), Positives = 87/167 (52%), Gaps = 7/167 (4%)

Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +++  D L+GL N   F       ++    Y    SI+  DID FK+IND +GH VGD 
Sbjct: 261 ERMALTDPLTGLYNRRVFTEMAEKELAKAKRYGYNFSILMIDIDNFKKINDTYGHDVGDL 320

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  +S+ L         V R GGEEF      ++   A   A  LR++IE + I + +G
Sbjct: 321 VLKKISEILKRNVRGADLVARFGGEEFIVMLSNTNLNGAVKKAEQLRRMIEQTPIELPNG 380

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + +T+S G++     E +  +I  ADQALY AK+ G+NRV  F +
Sbjct: 381 EKLRVTVSIGVSTYRGHESLEELIKEADQALYEAKRKGKNRVEVFRE 427


>gi|218886572|ref|YP_002435893.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218757526|gb|ACL08425.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 730

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 96/178 (53%), Gaps = 8/178 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
            E   +  R+ QL+  D L+GL N   F+ +L         Y   L+++  D+D FK++N
Sbjct: 537 TEHREAQERLRQLATTDGLTGLANRRRFLEALEHEVQRHRRYGTPLALISIDVDRFKRVN 596

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGD+V+  L+            VGR+GGEEFA     ++ +EA  +A  LR  +
Sbjct: 597 DTWGHAVGDEVLRALAGICRAEVRDVDTVGRIGGEEFAVLLPDTAPEEAMAVAERLRAGV 656

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E + +  ++GP + +T+S G++     +   T++  AD+ALY AK  GRNRV    D+
Sbjct: 657 EAAPLLTTAGP-LTVTLSLGVSASPPCDGADTLLREADRALYRAKAGGRNRVERAFDL 713


>gi|254448933|ref|ZP_05062388.1| diguanylate cyclase [gamma proteobacterium HTCC5015]
 gi|198261470|gb|EDY85760.1| diguanylate cyclase [gamma proteobacterium HTCC5015]
          Length = 384

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 16/240 (6%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYI----LVENLSLVIISITISL----LLGY 84
           ++  +F   +  +A I L  + + P+  +       L  N + +I+ + +S     LL  
Sbjct: 143 VYGGLFTGALATLALIILSALEVIPYASVIETNGTPLHHNATWLILLLGLSTPYIGLLVA 202

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDI 136
           ++ S ++      + + QLS  D L+ + N    +  L         S + +LS++  D+
Sbjct: 203 MNSSAIRRWRQRESEVRQLSTTDPLTQVANRRHLLERLNLEISRCERSGHSELSLLMMDL 262

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK IND  GH  GD+ +   +  L         VGR GGEEF      +  Q A  +A
Sbjct: 263 DHFKSINDEHGHLFGDEALRVTARVLREQSRNTDLVGRYGGEEFCLLLPDTGPQGALQIA 322

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              R+ +E + I+   G  +HIT S G+A     +   ++++RAD+ALY AK+ GRNR+V
Sbjct: 323 ERCRQALEQADIDREDGEVLHITTSIGLATYQMGDTNESLLHRADEALYQAKEQGRNRIV 382


>gi|258406452|ref|YP_003199194.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
 gi|257798679|gb|ACV69616.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
          Length = 578

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 66/180 (36%), Positives = 92/180 (51%), Gaps = 10/180 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           S   + E   +   +  L+  D L+GL N   F       I     Y + L+++  DID+
Sbjct: 398 SAQDITERKRAEEHLRYLATTDELTGLYNRRHFMEILDTEIERAKRYEQSLALISLDIDH 457

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND  GH VGD  +  L+ QL+     P  +GRLGGEEFA  A  +    A  LA  
Sbjct: 458 FKTINDTHGHAVGDAALEHLAAQLLACKRQPDSLGRLGGEEFALIAPHTDRAGATELAER 517

Query: 199 LRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +R  +E + I + S  S+H TIS G+        + I  ++ RAD ALY AK++GRNR V
Sbjct: 518 IRSELERTPIELES-TSLHPTISLGVTALNIQDNDTIDALLKRADDALYEAKRTGRNRTV 576


>gi|34452029|gb|AAQ72480.1| sensory box/GGDEF family protein [Bacillus cereus]
          Length = 607

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 138 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 197

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 198 KNILNTAQTSANDVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDVVARQ 257

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++     G  + IT S GIA        +
Sbjct: 258 GGDEFTILLPDMYSEKSAAFIAEQILNIL--NKPFFIQGEELSITPSIGIAMYPDYGTDV 315

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 316 TELMKNADMAMYRAKANGKNRFVFFSKEMS 345


>gi|189425735|ref|YP_001952912.1| diguanylate cyclase [Geobacter lovleyi SZ]
 gi|189421994|gb|ACD96392.1| diguanylate cyclase [Geobacter lovleyi SZ]
          Length = 459

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 63/180 (35%), Positives = 87/180 (48%), Gaps = 8/180 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           I+   LKEL  +  ++ +++ ID L+GLLN  A +  +              + +  DID
Sbjct: 272 INNRFLKELREAQEKLVEMATIDSLTGLLNRRAGLERVEEELSRHQRSERAFACLLLDID 331

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK+IND +GH  GD V++     L         V R GGEEF      +S   A   A 
Sbjct: 332 RFKKINDTYGHQAGDAVLSEFGATLRRHVRKHDIVCRYGGEEFLLLLPDTSPSAARTTAE 391

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +R +   + I   +G  I +T S GI+     E    +I RAD ALY AK SGRNRVVC
Sbjct: 392 KIRAVTAATPIMF-AGRQIAVTTSIGISMMQGDETAKAMIARADAALYEAKNSGRNRVVC 450


>gi|262376901|ref|ZP_06070128.1| predicted protein [Acinetobacter lwoffii SH145]
 gi|262308246|gb|EEY89382.1| predicted protein [Acinetobacter lwoffii SH145]
          Length = 440

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 74/258 (28%), Positives = 120/258 (46%), Gaps = 23/258 (8%)

Query: 17  KNLESFSPHTFMIYFSIFFSIFIAT----VIFIANIFLFYIGLTPFYGLE-YILVENLSL 71
            NL   +     +Y SI  ++FI       +  +  F+F +  +P +    YI   N+  
Sbjct: 167 ANLCVQTQFKVAVYCSILIALFIMLGVSQFMSASQAFIFSVVFSPLWFFSIYINWNNILN 226

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-- 129
           V  S   SLL  +           +Y  +  L+  D L+ L N   F+        +   
Sbjct: 227 VRRSFLRSLLDEW-----------NYQTLKNLAHTDDLTQLYNRRHFVDMAERSIHQWPK 275

Query: 130 ----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
                ++ FD+D+FK IND++GH VGD+V+  +++           + R GGEEF A   
Sbjct: 276 HASSCLLMFDVDHFKNINDSYGHDVGDRVLQLIAEVTRKEMRHSDVLARFGGEEFIALLE 335

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQAL 244
            +  Q++ ++A  +R  I+   I +    +I  TIS G+AE   H +P+  +I +AD AL
Sbjct: 336 DTQLQDSLVIAERIRCAIQKQYIYVEPNHTIRFTISIGVAELESHTQPLEDLIKQADIAL 395

Query: 245 YVAKKSGRNRVVCFSDIE 262
           Y AKKSGRNR+  +    
Sbjct: 396 YQAKKSGRNRIEVYHPDM 413


>gi|237746066|ref|ZP_04576546.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacter formigenes HOxBLS]
 gi|229377417|gb|EEO27508.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacter formigenes HOxBLS]
          Length = 1049

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 67/211 (31%), Positives = 101/211 (47%), Gaps = 16/211 (7%)

Query: 62  EYILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-- 118
           E++L++ +       +   L  YI + + L E   +  R+  L+  D L+GL N +    
Sbjct: 581 EWLLIQTMR-----DSRGTLTHYIGTFTDLTERKETEERVQWLAHFDPLTGLPNRTLLHI 635

Query: 119 -----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                IS     +E L+++F D+D FK +ND+ GH VGD+++   S +LV        + 
Sbjct: 636 RSNLAISLAQRRHEPLALMFLDLDNFKNVNDSLGHGVGDELLKQFSQRLVNAVREQDTIS 695

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           RLGG+EF     G+    AA LA  L   I   Q NI     I++T+S GIA        
Sbjct: 696 RLGGDEFVLVLPGTDTDGAAYLAERLLN-IAARQYNI-ERHEINLTVSIGIAMYPTDGTD 753

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             T+   AD A+Y AK+SGRN    F+    
Sbjct: 754 FDTLWRSADAAMYRAKQSGRNDYCFFTTEMQ 784


>gi|119776269|ref|YP_929009.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119768769|gb|ABM01340.1| diguanylate cyclase [Shewanella amazonensis SB2B]
          Length = 319

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 80/276 (28%), Positives = 127/276 (46%), Gaps = 29/276 (10%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60
           +     +  + WL  +K +ES     +++    F S      +F       +    P  G
Sbjct: 57  LFEEFPELPAAWL--KKKMES----VYLLKNRAFISWEQRPFVFQ------FKNYRPITG 104

Query: 61  LEYILVENLSLVIISIT------ISLLLGYISGSILK--ELFISYNRISQLSRIDCLSGL 112
               + +N++L+ ++        IS+++  ++   +   +L  +  R+  LS+ D L+ L
Sbjct: 105 RAEFMYQNVTLLPLASLTGQITHISIIVYDVTDVAVNKLQLKNANERLEHLSQTDGLTQL 164

Query: 113 LNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N   +             Y + +S+V FDID FKQ+ND  GH  GDKVI  ++  L   
Sbjct: 165 HNRRHWQECMNREYERFNRYGDPVSLVMFDIDRFKQVNDEHGHVAGDKVIQHIAHLLSQS 224

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                  GR GGEEFA    G++ +EA      LR+ + +S I    G SI +TIS GI 
Sbjct: 225 LRETDCAGRYGGEEFAVVLTGTTAEEAYHFTERLREKVASSAIQF-GGKSIQVTISLGIC 283

Query: 226 ERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                 +  S  +  ADQALY AK+ GRNR V +S+
Sbjct: 284 GMDDFVDNESQWLACADQALYQAKQQGRNRTVIYSE 319


>gi|228988575|ref|ZP_04148662.1| Sensory box protein [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228771192|gb|EEM19671.1| Sensory box protein [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 735

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 266 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 325

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                        ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 326 KKILNTAQTSANDVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDVVARQ 385

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++     G  + IT S GIA        +
Sbjct: 386 GGDEFTILLPDMYSEKSAAFIAEQILNIL--NKPFFIQGEELSITPSIGIAMYPDYGTDV 443

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 444 TELMKNADMAMYRAKANGKNRFVFFSKEMS 473


>gi|229158909|ref|ZP_04286966.1| Sensory box protein [Bacillus cereus ATCC 4342]
 gi|228624520|gb|EEK81290.1| Sensory box protein [Bacillus cereus ATCC 4342]
          Length = 735

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 266 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 325

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 326 KNILNTAQTSANDVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDVVARQ 385

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++     G  + IT S GIA        +
Sbjct: 386 GGDEFTILLPDMYSEKSAAFIAEQILNIL--NKPFFIQGEELSITPSIGIAMYPDYGTDV 443

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 444 TELMKNADMAMYRAKANGKNRFVFFSKEMS 473


>gi|119899351|ref|YP_934564.1| GGDEF/EAL/PAS/PAC/GAF-domain-containing protein [Azoarcus sp. BH72]
 gi|119671764|emb|CAL95678.1| GGDEF/EAL/PAS/PAC/GAF-domain containing protein [Azoarcus sp. BH72]
          Length = 1006

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 10/185 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
              + E   +   I +L+  D L+GL N S                  +L+++FFD+D+F
Sbjct: 553 ARDISERRAAEAEIQRLAHYDQLTGLPNRSLVKDRFRYAASLTQRRRGQLAVMFFDLDHF 612

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND  GH  GD+++  ++ +L  V      V RLGG+EF      +  + AA +A  L
Sbjct: 613 KNINDTLGHDFGDRLLVEVARRLESVLRGGDTVCRLGGDEFVFLLPDTDAEGAARVAAKL 672

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            + +   Q  +     + +T S GIA          T+   AD A+Y AK+ GRN    F
Sbjct: 673 LEAVA--QPLVLDHQELTVTPSIGIAMYPDDGTDFDTLSRNADAAMYQAKREGRNGFRFF 730

Query: 259 SDIEN 263
           ++   
Sbjct: 731 TEAMQ 735


>gi|317152067|ref|YP_004120115.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942318|gb|ADU61369.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
          Length = 1051

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 61/178 (34%), Positives = 93/178 (52%), Gaps = 9/178 (5%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
              + E   +  R+ +L+  D L+GL N   F+            Y   L+++  DID+FK
Sbjct: 874  RDITERKATEARLHELATTDSLTGLFNRRRFMELAEREFMRTKRYQGALTMLMMDIDHFK 933

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ++ND  GH VGD+V+  L+            +GRLGGEEF      +    A  +A  LR
Sbjct: 934  RVNDTHGHGVGDEVLRELARISRTALRELDILGRLGGEEFGVLLPETDAGPAMEVAQRLR 993

Query: 201  KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
            + IE + +   +G ++ IT+S G A   +  E + T++ RAD ALY AK+SGRN+VV 
Sbjct: 994  RAIEKASMATDAG-TLRITVSIGAATSNNDAETVETLLKRADVALYEAKQSGRNKVVA 1050


>gi|228968479|ref|ZP_04129467.1| Sensory box protein [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228791185|gb|EEM38799.1| Sensory box protein [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 586

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 117 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 176

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH VGD ++  ++++L     +   V R 
Sbjct: 177 KVILNTAQTNANDVAVMFLDLDRFKKINDRLGHDVGDLLLIEVANRLRGCLRSKDVVARQ 236

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A  +A  +  I+  ++     G  + IT S GIA        +
Sbjct: 237 GGDEFTILLPEMYSEKSAIFIAEQILTIL--NKPFFIQGEELSITPSIGIAMYPDYGTDV 294

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 295 NELMKNADMAMYRAKANGKNRFVFFSKEMS 324


>gi|206975811|ref|ZP_03236722.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97]
 gi|206745905|gb|EDZ57301.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97]
          Length = 604

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 135 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 194

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 195 KNILNTAQASANDVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRSCLRSKDVVARQ 254

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++        + IT S GIA        +
Sbjct: 255 GGDEFTILLPDMYSEKSAAFIAEQILNIL--NKPFFIKDEELSITPSIGIAMYPDCGTDV 312

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR + FS   +
Sbjct: 313 TALMKNADMAMYRAKANGKNRFIFFSKEMS 342


>gi|217962838|ref|YP_002341416.1| sensory box/GGDEF family protein [Bacillus cereus AH187]
 gi|217065154|gb|ACJ79404.1| sensory box/GGDEF family protein [Bacillus cereus AH187]
          Length = 604

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 135 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 194

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 195 KNILNTAQASANDVAVMFLDLDRFKKINDRLGHGVGDLLLIEVAKRLRSCLRSKDVVARQ 254

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++        + IT S GIA        +
Sbjct: 255 GGDEFTILLPDMYSEKSAAFIAEQILNIL--NKPFFIKDEELSITPSIGIAMYPDCGTDV 312

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 313 TALMKNADMAMYRAKANGKNRFVFFSKEMS 342


>gi|260893166|ref|YP_003239263.1| diguanylate cyclase [Ammonifex degensii KC4]
 gi|260865307|gb|ACX52413.1| diguanylate cyclase [Ammonifex degensii KC4]
          Length = 615

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 64/194 (32%), Positives = 94/194 (48%), Gaps = 13/194 (6%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLS 130
           +S+    I+   L EL        +LS ID L+ L N       L          N   S
Sbjct: 411 VSITAAMIANLRLSELN------RRLSLIDPLTQLYNRRFLEEYLTHQVVEAQRLNRPFS 464

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           I+F D+D FK +ND +GH VGD  +  L+  +         V R GGEEF A   G+  +
Sbjct: 465 ILFIDVDQFKNVNDFYGHEVGDIALTLLAQTIKQNLREADAVVRYGGEEFIAVLPGTDLE 524

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
            AA  A  +R+ +  + I + SG +I +T+S G+A+         +I RAD+A+Y AK  
Sbjct: 525 GAAQAAEKVRRAVAETPICLESGENIFLTVSIGVAQYRIGLNPEEVIQRADEAMYQAKIK 584

Query: 251 GRNRVVCFSDIENN 264
           G+N VV + + EN 
Sbjct: 585 GKNLVVAYHEGENK 598


>gi|254687210|ref|ZP_05151068.1| sensory box/GGDEF family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724703|ref|ZP_05186486.1| sensory box/GGDEF family protein [Bacillus anthracis str. A1055]
 gi|254755818|ref|ZP_05207850.1| sensory box/GGDEF family protein [Bacillus anthracis str. Vollum]
 gi|254762158|ref|ZP_05214004.1| sensory box/GGDEF family protein [Bacillus anthracis str. Australia
           94]
          Length = 604

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 135 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 194

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH +GD ++  ++ +L     +   V R 
Sbjct: 195 KNILNTAQASANDVAVMFLDLDRFKKINDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQ 254

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++        + IT S GIA        +
Sbjct: 255 GGDEFTILLPDMYSEKSAAFIAEQILNIL--NKPFFIKDEELSITPSIGIAMYPDCGTDV 312

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 313 TELMKNADMAMYRAKANGKNRFVFFSKEMS 342


>gi|229199474|ref|ZP_04326136.1| Sensory box protein [Bacillus cereus m1293]
 gi|228584002|gb|EEK42158.1| Sensory box protein [Bacillus cereus m1293]
          Length = 735

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 266 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 325

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 326 KNILNTAQASANDVAVIFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRSCLRSKDVVARQ 385

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++        + IT S GIA        +
Sbjct: 386 GGDEFTILLPDMYSEKSAAFIAEQILNIL--NKPFFIKDEELSITPSIGIAMYPDCGTDV 443

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 444 TALMKNADMAMYRAKANGKNRFVFFSKEMS 473


>gi|326943146|gb|AEA19042.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 675

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 206 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 265

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            +           ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 266 KAILNTAQTNANDVAVIFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDVVARQ 325

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A  +A  +  I+  ++     G  + IT S GIA        +
Sbjct: 326 GGDEFTILLPEMYSEKSAIFIAEQILTIL--NKPFFIQGEELSITPSIGIAMYPDYGTDV 383

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 384 NELMKNADMAMYRAKANGKNRFVFFSKEMS 413


>gi|119484393|ref|ZP_01619010.1| hypothetical protein L8106_01707 [Lyngbya sp. PCC 8106]
 gi|119457867|gb|EAW38990.1| hypothetical protein L8106_01707 [Lyngbya sp. PCC 8106]
          Length = 466

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/265 (27%), Positives = 132/265 (49%), Gaps = 15/265 (5%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIA-TVIFIANIFLFYIGLTPFYG--LEYI 64
           F   +L     L +F  + F+++  + F    A T IFI + F  + G+T   G  +   
Sbjct: 203 FNGWFLSRSIVLPAFLVYPFLVWAPLRFETRGASTAIFIISGFALF-GVTHQVGPFISPS 261

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           L+  L LV + + ++ ++  +  + + EL  + + + QL+  D L+GL N    +  L  
Sbjct: 262 LLNTLILVWLFVNVAAIVSLVLAASIGELKTAKHYLEQLALHDSLTGLDNRLLLMEKLAE 321

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  YN + +I++ D+D FK IND FGH  GD V+  ++ +L         V RLGG
Sbjct: 322 SLATVQRYNTQSAIIYLDLDGFKPINDTFGHEAGDFVLIEVAKRLRSCVREVDTVARLGG 381

Query: 178 EEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPIST 235
           +EF       S       +A+ + + I N+ IN+  G ++++ +S GIA      +    
Sbjct: 382 DEFVVLLHNLSDTDTVQQIADRIVETI-NASINLF-GTTVNVGVSMGIALIPQDGKYPHQ 439

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++  AD+A+Y+AK+ G+N+   FS+
Sbjct: 440 LLKNADKAMYLAKQQGKNQYQFFSE 464


>gi|229020569|ref|ZP_04177311.1| Sensory box protein [Bacillus cereus AH1273]
 gi|229026787|ref|ZP_04183119.1| Sensory box protein [Bacillus cereus AH1272]
 gi|228734510|gb|EEL85172.1| Sensory box protein [Bacillus cereus AH1272]
 gi|228740733|gb|EEL90989.1| Sensory box protein [Bacillus cereus AH1273]
          Length = 688

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++ + I I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 219 YYYYLHITFIPIFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 278

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 279 KTILNTAQNNTNDVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQ 338

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++        + +T S GIA        +
Sbjct: 339 GGDEFTILLPDMYSEKSAAFIAEQILTIL--NKPYFIKDEELSVTPSIGIAMFPEYGTDV 396

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR + FS   +
Sbjct: 397 TELMKNADMAMYRAKANGKNRFIFFSKEMS 426


>gi|241766036|ref|ZP_04763954.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii 2AN]
 gi|241363963|gb|EER59238.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii 2AN]
          Length = 1152

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 10/179 (5%)

Query: 87   GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYF 139
               + E       + +L+  D L+GL N  AF++ L     + S       ++  D+D+F
Sbjct: 964  AKDVTERRRHEQTLERLATTDALTGLANRRAFMARLEEERMRPSMGGRGGMLIMLDLDHF 1023

Query: 140  KQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
            K++ND +GH  GD+V+  L+  L   +       GRLGGEEFA     ++ +EA  +A  
Sbjct: 1024 KRVNDTWGHAAGDEVLVHLARLLRGDLLRATDLAGRLGGEEFAVLLPDTTAEEALGVAER 1083

Query: 199  LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            LR+ +E S+I++  G ++ +T+S G+A          ++  AD ALY AK +GRN+VV 
Sbjct: 1084 LRRALEQSKIHVGDGATLQVTMSLGVAPITG--DALAVLAHADIALYEAKNTGRNKVVL 1140


>gi|254733613|ref|ZP_05191331.1| sensory box/GGDEF family protein [Bacillus anthracis str. Western
           North America USA6153]
          Length = 385

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 135 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 194

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH +GD ++  ++ +L     +   V R 
Sbjct: 195 KNILNTAQASANDVAVMFLDLDRFKKINDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQ 254

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++        + IT S GIA        +
Sbjct: 255 GGDEFTILLPDMYSEKSAAFIAEQILNIL--NKPFFIKDEELSITPSIGIAMYPDCGTDV 312

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 313 TELMKNADMAMYRAKANGKNRFVFFSKEMS 342


>gi|320160324|ref|YP_004173548.1| hypothetical protein ANT_09140 [Anaerolinea thermophila UNI-1]
 gi|319994177|dbj|BAJ62948.1| hypothetical protein ANT_09140 [Anaerolinea thermophila UNI-1]
          Length = 217

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 70/191 (36%), Positives = 106/191 (55%), Gaps = 10/191 (5%)

Query: 79  SLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLS 130
           SLL  + S + L  +    ++ + QL+ +D L+G+LN            S    ++  LS
Sbjct: 26  SLLATFCSEAALALQNARLFSEVQQLATLDDLTGILNRRQLFIEGKREFSRAKRHHRPLS 85

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D+FK+IND FGH VGD+ + FL+  +          GR GGEEF      + +Q
Sbjct: 86  LLMIDLDHFKEINDTFGHAVGDEALKFLAHIIRKTIREVDIFGRYGGEEFVLVLPETPKQ 145

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           EAA +A  LRK+IE S ++   G  + IT+S G+AE+    +    +I  ADQALY AK+
Sbjct: 146 EAAGIAERLRKLIEQSPVSTPEG-ELRITVSVGVAEQHELTQTFEDLIGYADQALYHAKQ 204

Query: 250 SGRNRVVCFSD 260
           SGRNRV  + +
Sbjct: 205 SGRNRVEMYDE 215


>gi|229014517|ref|ZP_04171635.1| Sensory box protein [Bacillus mycoides DSM 2048]
 gi|228746867|gb|EEL96752.1| Sensory box protein [Bacillus mycoides DSM 2048]
          Length = 675

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++ + I I   ++  +     +  L+    ++  ++  D L+GL N   F   L
Sbjct: 206 YYYHLHITFIPIFINKEVVGMFGIARDITTLYEKQKQVEHMAFHDALTGLPNRRKFEKDL 265

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 266 KTILNLAQNNTNDVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQ 325

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A+ +A  +  I+  ++        + +T S GIA        +
Sbjct: 326 GGDEFTILLPDMYSEKSASFIAEQILTIL--NKPYFIKDEELSVTPSIGIAMYPDYGTDV 383

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR + FS   +
Sbjct: 384 TELMKNADMAMYRAKANGKNRFIFFSKEMS 413


>gi|303245949|ref|ZP_07332231.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           fructosovorans JJ]
 gi|302492732|gb|EFL52600.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           fructosovorans JJ]
          Length = 622

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 63/193 (32%), Positives = 105/193 (54%), Gaps = 11/193 (5%)

Query: 78  ISLLLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEK 128
           + +L+  ++  I+   EL      +  L+  D L+G+ N   F+            Y + 
Sbjct: 430 VFVLVSDVTELIVTRHELERRVEELHLLATKDALTGISNRRHFLEQASMELVRAKRYGKP 489

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            +++  D+D+FK +ND  GH VGD+V+  L  +L     T   VGR+GGEEFAA  + + 
Sbjct: 490 FALLMLDVDHFKAVNDTHGHDVGDEVLRSLGAELQGTVRTSDHVGRIGGEEFAALIIEAD 549

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVA 247
            + A  +A  LR+ + +S I+  +GP +  T+S G+AE     + +  ++ RAD ALY A
Sbjct: 550 IENAREVAERLRQKLYSSCIDTRTGP-VSYTVSIGLAEYQREDDSVDDMLRRADLALYHA 608

Query: 248 KKSGRNRVVCFSD 260
           K++GRNRV C+ +
Sbjct: 609 KRNGRNRVCCYGE 621


>gi|229112762|ref|ZP_04242294.1| Sensory box protein [Bacillus cereus Rock1-15]
 gi|228670596|gb|EEL25908.1| Sensory box protein [Bacillus cereus Rock1-15]
          Length = 735

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 266 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 325

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            +           ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 326 KAILNTAQTNANDVAVIFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQ 385

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A  +A  +  I+  ++     G  + IT S GIA        +
Sbjct: 386 GGDEFTILLPEMYSEKSAIFIAEQILTIL--NKPFFIQGEELSITPSIGIAMYPDYGTDV 443

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 444 NELMKNADMAMYRAKANGKNRFVFFSKEMS 473


>gi|229153511|ref|ZP_04281689.1| Sensory box protein [Bacillus cereus m1550]
 gi|228630115|gb|EEK86766.1| Sensory box protein [Bacillus cereus m1550]
          Length = 735

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 266 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 325

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            +           ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 326 KAILNTAQTNANDVAVIFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQ 385

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A  +A  +  I+  ++     G  + IT S GIA        +
Sbjct: 386 GGDEFTILLPEMYSEKSAIFIAEQILTIL--NKPFFIQGEELSITPSIGIAMYPDYGTDV 443

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 444 NELMKNADMAMYRAKANGKNRFVFFSKEMS 473


>gi|148262461|ref|YP_001229167.1| diguanylate cyclase [Geobacter uraniireducens Rf4]
 gi|146395961|gb|ABQ24594.1| diguanylate cyclase [Geobacter uraniireducens Rf4]
          Length = 422

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 110/204 (53%), Gaps = 13/204 (6%)

Query: 66  VENLSLVIISI-TISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
            + L +V  +I TI LLLG   +++  ++  L ++   + +L+  D L+GL N    +  
Sbjct: 219 TDKLMIVAATIGTIGLLLGITYFLTWRLVLNLDMAQKHLKRLASTDELTGLKNRRQIMKR 278

Query: 122 LG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L           E L ++  D+D+FK+IND +GHP GD V+  ++  +         +GR
Sbjct: 279 LDEEYQRAIRLGEPLCLIMLDLDHFKKINDTYGHPFGDLVLKCVAGHMKKALRRYDVLGR 338

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPI 233
           +GGEEF   + G++ +EA +LA  LR  +E  +I       + IT+S G+A      + +
Sbjct: 339 IGGEEFLIVSPGTTREEAVVLAQRLRSTVEMEKIAYED-KKVTITVSCGVAFLYKGDDNV 397

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
             ++ RAD ALY+AK+ GRNRVV 
Sbjct: 398 EILLKRADSALYIAKQEGRNRVVA 421


>gi|229130597|ref|ZP_04259553.1| Sensory box protein [Bacillus cereus BDRD-Cer4]
 gi|229147888|ref|ZP_04276229.1| Sensory box protein [Bacillus cereus BDRD-ST24]
 gi|228635538|gb|EEK92027.1| Sensory box protein [Bacillus cereus BDRD-ST24]
 gi|228652936|gb|EEL08818.1| Sensory box protein [Bacillus cereus BDRD-Cer4]
          Length = 735

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 266 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 325

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            +           ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 326 KAILNTAQTNANDVAVIFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQ 385

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A  +A  +  I+  ++     G  + IT S GIA        +
Sbjct: 386 GGDEFTILLPEMYSEKSAIFIAEQILTIL--NKPFFIQGEELSITPSIGIAMYPDYGTDV 443

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 444 NELMKNADMAMYRAKANGKNRFVFFSKEMS 473


>gi|229051019|ref|ZP_04194567.1| Sensory box protein [Bacillus cereus AH676]
 gi|228722328|gb|EEL73725.1| Sensory box protein [Bacillus cereus AH676]
          Length = 735

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 266 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 325

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            +           ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 326 KAILNTAQTNANDVAVIFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQ 385

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A  +A  +  I+  ++     G  + IT S GIA        +
Sbjct: 386 GGDEFTILLPEMYSEKSAIFIAEQILTIL--NKPFFIQGEELSITPSIGIAMYPDYGTDV 443

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 444 NELMKNADMAMYRAKANGKNRFVFFSKEMS 473


>gi|229033982|ref|ZP_04188934.1| Sensory box protein [Bacillus cereus AH1271]
 gi|228728335|gb|EEL79359.1| Sensory box protein [Bacillus cereus AH1271]
          Length = 450

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 11/186 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
              +  L+    ++  L+  D L+GL N   F   L        +    ++++F D+D F
Sbjct: 5   ARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQTNANDVAVMFLDLDRF 64

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K+IND  GH VGD ++  ++ +L     +   V R GG+EF        SE+ AA +A  
Sbjct: 65  KKINDRLGHDVGDLLLIEVAKRLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQ 124

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  I+  ++        + IT S GIA        ++ ++  AD A+Y AK +G+NR V 
Sbjct: 125 ILTIL--NKPFFIKEEELSITPSIGIAMYPDYGTDVTELMKNADMAMYRAKANGKNRFVF 182

Query: 258 FSDIEN 263
           FS   +
Sbjct: 183 FSKEMS 188


>gi|229181597|ref|ZP_04308922.1| Sensory box protein [Bacillus cereus 172560W]
 gi|228601793|gb|EEK59289.1| Sensory box protein [Bacillus cereus 172560W]
          Length = 735

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 266 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 325

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            +           ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 326 KAILNTAQTNANDVAVIFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQ 385

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A  +A  +  I+  ++     G  + IT S GIA        +
Sbjct: 386 GGDEFTILLPEMYSEKSAIFIAEQILTIL--NKPFFIQGEELSITPSIGIAMYPDYGTNV 443

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 444 NELMKNADMAMYRAKANGKNRFVFFSKEMS 473


>gi|229064998|ref|ZP_04200296.1| Sensory box protein [Bacillus cereus AH603]
 gi|228716299|gb|EEL68011.1| Sensory box protein [Bacillus cereus AH603]
          Length = 735

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 53/210 (25%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++ + I I   ++  +     +  L+    ++  ++  D L+GL N   F   L
Sbjct: 266 YYYHLHITFIPIFINREVVGMFGIARDITTLYEKQKQVEHMAFHDALTGLPNRRKFEKDL 325

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 326 KTILNLAQNNTNDVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQ 385

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A+ +A  +  I+  ++        + +T S GIA        +
Sbjct: 386 GGDEFTILLPDMYSEKSASFIAEQILTIL--NKPYFIKDEELSVTPSIGIAMYPDYGTDV 443

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 444 TELMKNADMAMYRAKANGKNRFVFFSKEMS 473


>gi|47569773|ref|ZP_00240445.1| sensory box protein [Bacillus cereus G9241]
 gi|47553569|gb|EAL11948.1| sensory box protein [Bacillus cereus G9241]
          Length = 937

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 468 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 527

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 528 KNILNTAQTSANDVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDVVARQ 587

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++     G  + IT S GIA        +
Sbjct: 588 GGDEFTILLPDMYSEKSAAFIAEQILNIL--NKPFFIQGEELSITPSIGIAMYPDYGTDV 645

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 646 TELMKNADMAMYRAKANGKNRFVFFSKEMS 675


>gi|78485494|ref|YP_391419.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
            XCL-2]
 gi|78363780|gb|ABB41745.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Thiomicrospira crunogena XCL-2]
          Length = 1466

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 11/185 (5%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
             + ++  S  +I  L+  D L+GL+N    +  L          N  L+++F D+D+FK 
Sbjct: 1024 DISKVKESEEKIKHLAHYDPLTGLVNRELLMDRLNHSISTADRNNTPLALLFIDLDHFKN 1083

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            +ND  GH VGD+++  +  +++ +      + R GG+EF      + E  A  +A  + +
Sbjct: 1084 VNDTLGHQVGDQLLIEVGQRILKILRDEDTIARQGGDEFIVVLPDTGENGAVHVAEKILE 1143

Query: 202  IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             I + Q+N+     + IT S GIA      +   +++  AD A+Y AK  GRN    F+ 
Sbjct: 1144 SISD-QLNLKP-YKLFITPSIGIAVYPQDGKDADSLLKNADTAMYQAKNDGRNVYRFFT- 1200

Query: 261  IENNT 265
            +E   
Sbjct: 1201 MEMQA 1205


>gi|229142091|ref|ZP_04270616.1| Sensory box protein [Bacillus cereus BDRD-ST26]
 gi|228641380|gb|EEK97686.1| Sensory box protein [Bacillus cereus BDRD-ST26]
          Length = 735

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 266 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 325

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 326 KNILNTAQASANDVAVMFLDLDRFKKINDRLGHGVGDLLLIEVAKRLRSCLRSKDVVARQ 385

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++        + IT S GIA        +
Sbjct: 386 GGDEFTILLPDMYSEKSAAFIAEQILNIL--NKPFFIKDEELSITPSIGIAMYPDCGTDV 443

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 444 TALMKNADMAMYRAKANGKNRFVFFSKEMS 473


>gi|228961612|ref|ZP_04123221.1| Sensory box protein [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228798094|gb|EEM45098.1| Sensory box protein [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 735

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 266 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 325

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            +           ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 326 KAILNTAQTNANDVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQ 385

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A  +A  +  I+  ++     G  + IT S GIA        +
Sbjct: 386 GGDEFTILLPEMYSEKSAIFIAEQILTIL--NKPFFIQGEELSITPSIGIAMYPDYGTDV 443

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 444 NELMKNADMAMYRAKGNGKNRFVFFSKEMS 473


>gi|222054413|ref|YP_002536775.1| diguanylate cyclase [Geobacter sp. FRC-32]
 gi|221563702|gb|ACM19674.1| diguanylate cyclase [Geobacter sp. FRC-32]
          Length = 417

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 113/211 (53%), Gaps = 16/211 (7%)

Query: 62  EYILVENLSLVIISITISLLLGYISG-------SILKELFISYNRISQLSRIDCLSGLLN 114
           E +   +LS ++I +   L++G + G        ++  L  +  R+ +L+  D L+GL N
Sbjct: 208 ELVRQTHLSQLLIVLAAILIIGLVVGITYFLTWRLVINLDEAQQRLKRLASTDELTGLRN 267

Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
               +  L           E L I+  D+D FK+IND +GHP GD V+ ++++++  V  
Sbjct: 268 RRHIMGRLEEEFERSNRLGEPLCIIMLDLDLFKKINDTWGHPFGDHVLKWVANRMNEVVR 327

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
               VGR+GGEEF   +  ++  EA +LA  LR+ IE   IN   G  I +TISAGIA  
Sbjct: 328 AYDVVGRIGGEEFLIISPSTTLGEAVVLAERLRETIEQETINH-GGTVIPLTISAGIALM 386

Query: 228 CHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
              +     +I RAD ALY AK++GRNRVV 
Sbjct: 387 GKADINSDDLIRRADAALYRAKQAGRNRVVV 417


>gi|165871333|ref|ZP_02215982.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488]
 gi|167640372|ref|ZP_02398636.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193]
 gi|170688171|ref|ZP_02879382.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465]
 gi|170708029|ref|ZP_02898477.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389]
 gi|177651942|ref|ZP_02934525.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174]
 gi|190569113|ref|ZP_03022012.1| sensory box/GGDEF family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227818111|ref|YP_002818120.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684]
 gi|229601817|ref|YP_002869563.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248]
 gi|164713000|gb|EDR18528.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488]
 gi|167511592|gb|EDR86974.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193]
 gi|170127002|gb|EDS95881.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389]
 gi|170667864|gb|EDT18616.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465]
 gi|172082646|gb|EDT67710.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174]
 gi|190559781|gb|EDV13767.1| sensory box/GGDEF family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227006433|gb|ACP16176.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684]
 gi|229266225|gb|ACQ47862.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248]
          Length = 735

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 266 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 325

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH +GD ++  ++ +L     +   V R 
Sbjct: 326 KNILNTAQASANDVAVMFLDLDRFKKINDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQ 385

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++        + IT S GIA        +
Sbjct: 386 GGDEFTILLPDMYSEKSAAFIAEQILNIL--NKPFFIKDEELSITPSIGIAMYPDCGTDV 443

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 444 TELMKNADMAMYRAKANGKNRFVFFSKEMS 473


>gi|196045448|ref|ZP_03112679.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108]
 gi|218906527|ref|YP_002454361.1| sensory box/GGDEF family protein [Bacillus cereus AH820]
 gi|225867330|ref|YP_002752708.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102]
 gi|228917957|ref|ZP_04081493.1| Sensory box protein [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228936633|ref|ZP_04099427.1| Sensory box protein [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|229124852|ref|ZP_04254030.1| Sensory box protein [Bacillus cereus 95/8201]
 gi|229187574|ref|ZP_04314714.1| Sensory box protein [Bacillus cereus BGSC 6E1]
 gi|196023655|gb|EDX62331.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108]
 gi|218536626|gb|ACK89024.1| sensory box/GGDEF family protein [Bacillus cereus AH820]
 gi|225788718|gb|ACO28935.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102]
 gi|228595941|gb|EEK53621.1| Sensory box protein [Bacillus cereus BGSC 6E1]
 gi|228658643|gb|EEL14305.1| Sensory box protein [Bacillus cereus 95/8201]
 gi|228823068|gb|EEM68906.1| Sensory box protein [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228841754|gb|EEM86865.1| Sensory box protein [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 735

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 266 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 325

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH +GD ++  ++ +L     +   V R 
Sbjct: 326 KNILNTAQASANDVAVMFLDLDRFKKINDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQ 385

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++        + IT S GIA        +
Sbjct: 386 GGDEFTILLPDMYSEKSAAFIAEQILNIL--NKPFFIKDEELSITPSIGIAMYPDCGTDV 443

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 444 TELMKNADMAMYRAKANGKNRFVFFSKEMS 473


>gi|218900474|ref|YP_002448885.1| sensory box/GGDEF family protein [Bacillus cereus G9842]
 gi|218541726|gb|ACK94120.1| sensory box/GGDEF family protein [Bacillus cereus G9842]
          Length = 735

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 266 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 325

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            +           ++++F D+D FK+IND  GH VGD ++  ++++L     +   V R 
Sbjct: 326 KAILNTAQTNANDVAVMFLDLDRFKKINDRLGHDVGDLLLIEVANRLRGCLRSKDVVARQ 385

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A  +A  +  I+  ++     G  + IT S GIA        +
Sbjct: 386 GGDEFTILLPEMYSEKSAIFIAEQILTIL--NKPFFIQGEELSITPSIGIAMYPDYGTDV 443

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 444 NELMKNADMAMYRAKANGKNRFVFFSKEMS 473


>gi|196036537|ref|ZP_03103932.1| sensory box/GGDEF family protein [Bacillus cereus W]
 gi|228949069|ref|ZP_04111341.1| Sensory box protein [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|195990870|gb|EDX54843.1| sensory box/GGDEF family protein [Bacillus cereus W]
 gi|228810642|gb|EEM56991.1| Sensory box protein [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 735

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 266 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 325

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH +GD ++  ++ +L     +   V R 
Sbjct: 326 KNILNTAQASANDVAVMFLDLDRFKKINDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQ 385

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++        + IT S GIA        +
Sbjct: 386 GGDEFTILLPDMYSEKSAAFIAEQILNIL--NKPFFIKDEELSITPSIGIAMYPDCGTDV 443

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 444 TELMKNADMAMYRAKANGKNRFVFFSKEMS 473


>gi|65317327|ref|ZP_00390286.1| COG5001: Predicted signal transduction protein containing a
           membrane domain, an EAL and a GGDEF domain [Bacillus
           anthracis str. A2012]
          Length = 735

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 266 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 325

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH +GD ++  ++ +L     +   V R 
Sbjct: 326 KNILNTAQASANDVAVMFLDLDRFKKINDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQ 385

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++        + IT S GIA        +
Sbjct: 386 GGDEFTILLPDMYSEKSAAFIAEQILNIL--NKPFFIKDEELSITPSIGIAMYPDCGTDV 443

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 444 TELMKNADMAMYRAKANGKNRFVFFSKEMS 473


>gi|228903827|ref|ZP_04067942.1| Sensory box protein [Bacillus thuringiensis IBL 4222]
 gi|228855736|gb|EEN00281.1| Sensory box protein [Bacillus thuringiensis IBL 4222]
          Length = 735

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 266 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 325

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            +           ++++F D+D FK+IND  GH VGD ++  ++++L     +   V R 
Sbjct: 326 KAILNTAQTNANDVAVMFLDLDRFKKINDRLGHDVGDLLLIEVANRLRGCLRSKDVVARQ 385

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A  +A  +  I+  ++     G  + IT S GIA        +
Sbjct: 386 GGDEFTILLPEMYSEKSAIFIAEQILTIL--NKPFFIQGEELSITPSIGIAMYPDYGTDV 443

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 444 NELMKNADMAMYRAKANGKNRFVFFSKEMS 473


>gi|228942495|ref|ZP_04105031.1| Sensory box protein [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228975429|ref|ZP_04135984.1| Sensory box protein [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228982062|ref|ZP_04142354.1| Sensory box protein [Bacillus thuringiensis Bt407]
 gi|228777600|gb|EEM25875.1| Sensory box protein [Bacillus thuringiensis Bt407]
 gi|228784223|gb|EEM32247.1| Sensory box protein [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228817178|gb|EEM63267.1| Sensory box protein [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 735

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 266 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 325

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            +           ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 326 KAILNTAQTNANDVAVIFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDVVARQ 385

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A  +A  +  I+  ++     G  + IT S GIA        +
Sbjct: 386 GGDEFTILLPEMYSEKSAIFIAEQILTIL--NKPFFIQGEELSITPSIGIAMYPDYGTDV 443

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 444 NELMKNADMAMYRAKANGKNRFVFFSKEMS 473


>gi|228930357|ref|ZP_04093361.1| Sensory box protein [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228829343|gb|EEM74976.1| Sensory box protein [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 677

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 208 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 267

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH +GD ++  ++ +L     +   V R 
Sbjct: 268 KNILNTAQASANDVAVMFLDLDRFKKINDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQ 327

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++        + IT S GIA        +
Sbjct: 328 GGDEFTILLPDMYSEKSAAFIAEQILNIL--NKPFFIKDEELSITPSIGIAMYPDCGTDV 385

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 386 TELMKNADMAMYRAKANGKNRFVFFSKEMS 415


>gi|167635770|ref|ZP_02394080.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442]
 gi|254742267|ref|ZP_05199954.1| sensory box/GGDEF family protein [Bacillus anthracis str. Kruger B]
 gi|167528879|gb|EDR91636.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442]
          Length = 735

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 266 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 325

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH +GD ++  ++ +L     +   V R 
Sbjct: 326 KNILNTAQASANDVAVMFLDLDRFKKINDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQ 385

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++        + IT S GIA        +
Sbjct: 386 GGDEFTILLPDMYSEKSAAFIAEQILNIL--NKPFFIKDEELSITPSIGIAMYPDCGTDV 443

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 444 TELMKNADMAMYRAKANGKNRFVFFSKEMS 473


>gi|118578533|ref|YP_899783.1| PAS/PAC sensor-containing diguanylate cyclase [Pelobacter
           propionicus DSM 2379]
 gi|118501243|gb|ABK97725.1| diguanylate cyclase with PAS/PAC sensor [Pelobacter propionicus DSM
           2379]
          Length = 301

 Score =  214 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 60/182 (32%), Positives = 93/182 (51%), Gaps = 8/182 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
           ++    + EL     ++ +++ +D L+G+ N     S L       G Y+   S++  DI
Sbjct: 121 FLIVQDVTELATYEQKLIEMNTVDALTGVYNRRFLESRLKEECDRYGRYSRPFSLMMIDI 180

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK++ND  GH  GD V+  ++     +     F+ R GGEEF      +    A  +A
Sbjct: 181 DFFKKVNDTHGHQGGDLVLKNVAAGAAAMIRKSDFLARYGGEEFCCLLPETDCDAAETVA 240

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR  IEN + ++     I +TIS GIA     +   T++ RAD+ALY AK+SGRNR V
Sbjct: 241 EHLRAHIENME-HLFQKKVIRVTISLGIACFAPDDSPETLVKRADEALYQAKRSGRNRFV 299

Query: 257 CF 258
            F
Sbjct: 300 RF 301


>gi|324329298|gb|ADY24558.1| hypothetical protein YBT020_26680 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 892

 Score =  214 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 423 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 482

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 483 KNILNTAQTSANDVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRSCLRSKDVVARQ 542

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++        + IT S GIA        +
Sbjct: 543 GGDEFTILLPDMYSEKSAAFIAEQILTIL--NKPFFIKDEELSITPSIGIAMYPDCGTDV 600

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 601 TELMKNADMAMYRAKANGKNRFVFFSKEMS 630


>gi|228911188|ref|ZP_04074993.1| Sensory box protein [Bacillus thuringiensis IBL 200]
 gi|228848364|gb|EEM93213.1| Sensory box protein [Bacillus thuringiensis IBL 200]
          Length = 735

 Score =  214 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 266 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 325

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            +           ++++F D+D FK+IND  GH VGD ++  ++++L     +   V R 
Sbjct: 326 KAILNTAQTNANDVAVIFLDLDRFKKINDRLGHDVGDLLLIEVANRLRGCLRSKDVVARQ 385

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A  +A  +  I+  ++     G  + IT S GIA        +
Sbjct: 386 GGDEFTILLPEMYSEKSAIFIAEQILTIL--NKPFFIQGEELSITPSIGIAMYPDYGTDV 443

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 444 NELMKNADMAMYRAKANGKNRFVFFSKEMS 473


>gi|42784524|ref|NP_981771.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987]
 gi|42740456|gb|AAS44379.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987]
          Length = 892

 Score =  214 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 11/206 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 423 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 482

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 483 KNILNTAQTSASDVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRSCLRSKDVVARQ 542

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++     G  + IT S GIA        +
Sbjct: 543 GGDEFTILLPDMYSEKSAAFIAEQILNIL--NKPFFIQGEELSITPSIGIAMYPDYGTDV 600

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
           + ++  AD A+Y AK +G+NR V FS
Sbjct: 601 TALMKNADMAMYRAKANGKNRFVFFS 626


>gi|300117863|ref|ZP_07055630.1| sensory box/GGDEF family protein [Bacillus cereus SJ1]
 gi|298724727|gb|EFI65402.1| sensory box/GGDEF family protein [Bacillus cereus SJ1]
          Length = 735

 Score =  214 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 266 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 325

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 326 KNILNTAQASANDVAVMFLDLDRFKKINDRLGHGVGDLLLIEVAKRLRGCLRSKDVVARQ 385

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++        + IT S GIA        +
Sbjct: 386 GGDEFTILLPDMYSEKSAAFIAEQILNIL--NKPFFIKDEELSITPSIGIAMYPDCGTNV 443

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 444 TELMKNADMAMYRAKANGKNRFVFFSKEMS 473


>gi|189426365|ref|YP_001953542.1| diguanylate cyclase [Geobacter lovleyi SZ]
 gi|189422624|gb|ACD97022.1| diguanylate cyclase [Geobacter lovleyi SZ]
          Length = 307

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 60/180 (33%), Positives = 99/180 (55%), Gaps = 8/180 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
           YI+   + +  I  +++ Q++++D L+G+ N     + L         +   LSI+  DI
Sbjct: 119 YITVQDVTDFVIYEHKLIQMAKVDGLTGVFNRRYLDTRLQEELERSRRHGNPLSIMMLDI 178

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND  GH  GD  +  +S+ L+ +  T   +GR GGEEF      +S ++A +LA
Sbjct: 179 DHFKEINDTHGHICGDYTLRKISELLLELVRTSDILGRYGGEEFCCILPETSFEQALVLA 238

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              R  +  SQ + +   S  +T+S G+ +    + + +II RAD ALY AK++GRNRV 
Sbjct: 239 ERCRTQVAASQFSCTDHQS-RVTVSIGVTDLHRDDTLDSIIKRADDALYQAKRTGRNRVC 297


>gi|229082562|ref|ZP_04215025.1| Sensory box protein [Bacillus cereus Rock4-2]
 gi|228700994|gb|EEL53517.1| Sensory box protein [Bacillus cereus Rock4-2]
          Length = 835

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 366 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 425

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            +           ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 426 KAILNTAQTNANDVAVIFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQ 485

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A  +A  +  I+  ++     G  + IT S GIA        +
Sbjct: 486 GGDEFTILLPEMYSEKSAIFIAEQILTIL--NKPFFIQGEELSITPSIGIAMYPDYGTDV 543

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 544 NELMKNADMAMYRAKANGKNRFVFFSKEMS 573


>gi|262280505|ref|ZP_06058289.1| GGDEF domain-containing protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258283|gb|EEY77017.1| GGDEF domain-containing protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 397

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 78/283 (27%), Positives = 128/283 (45%), Gaps = 26/283 (9%)

Query: 6   KDFLSIWLCHEKNL-ESFSPHTFMIYFS-------------IFFSIFIATVIFIANIFLF 51
             F ++ LCH+  L  S SP T + Y               ++ ++  ATVI     +L 
Sbjct: 110 VQFFTLMLCHDGYLIGSISPATMVGYVGTIGVGLVLFDRKIVYSALVPATVILTVCTYLS 169

Query: 52  YIGLTPFYGLEYILVENL---------SLVIISITISLLLGYISGSILKELFISYNRISQ 102
             G  P+  L  ++             S+    + I L    +   +L +       I +
Sbjct: 170 MKGTLPYAPLFNLIAMQRAQTNPFWLGSMAFFIMPILLACFILFEILLTQWRQRETYIQR 229

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           LS++D L+ +LN  +  + L S +++    ++V  DID+FK+IND +GH  GD+V+  ++
Sbjct: 230 LSQLDPLTNVLNRRSLNTHLESLHQQQFDYAVVLLDIDHFKKINDIYGHHQGDQVLIEIA 289

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L     +   +GR GGEEF      +   +A  +A   R  +E   +  +    IHI+
Sbjct: 290 QCLSKNLRSEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRHALEELPVFSTQNNPIHIS 349

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            S GI+     +    +I +ADQALY  K SGRN+V  F   E
Sbjct: 350 ASFGISSSAFAKDPYLVIRQADQALYAVKASGRNQVRTFHQTE 392


>gi|228955597|ref|ZP_04117597.1| Sensory box protein [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228804073|gb|EEM50692.1| Sensory box protein [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 835

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 366 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 425

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            +           ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 426 KAILNTAQTNANDVAVIFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQ 485

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A  +A  +  I+  ++     G  + IT S GIA        +
Sbjct: 486 GGDEFTILLPEMYSEKSAIFIAEQILTIL--NKPFFIQGEELSITPSIGIAMYPDYGTDV 543

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 544 NELMKNADMAMYRAKANGKNRFVFFSKEMS 573


>gi|229072815|ref|ZP_04206014.1| Sensory box protein [Bacillus cereus F65185]
 gi|228710306|gb|EEL62281.1| Sensory box protein [Bacillus cereus F65185]
          Length = 835

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 366 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 425

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            +           ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 426 KAILNTAQTNANDVAVIFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQ 485

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A  +A  +  I+  ++     G  + IT S GIA        +
Sbjct: 486 GGDEFTILLPEMYSEKSAIFIAEQILTIL--NKPFFIQGEELSITPSIGIAMYPDYGTDV 543

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 544 NELMKNADMAMYRAKANGKNRFVFFSKEMS 573


>gi|144899153|emb|CAM76017.1| GGDEF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 392

 Score =  214 bits (546), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 73/252 (28%), Positives = 116/252 (46%), Gaps = 25/252 (9%)

Query: 31  FSIFFSIFIATVI---------FIANIFLFYIGLTPFYGLEYILVEN-----LSLVIISI 76
           F +F + F+A  +          + +  L  + L    G+ +++ EN        V +S 
Sbjct: 136 FYLFIAAFVARRLPLNEPSMRMTLVSNLLLAVVLFGRAGVAWVMYENPQAAPAVAVWLSY 195

Query: 77  TISLLLGYISGSI----LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SY 125
           T+ + L  +S  I    L+E   S   +  L+ +D L+ +LN  +F +          S 
Sbjct: 196 TLMIALFCLSAQIYGLPLQEFTRSERTLEHLASVDPLTEVLNRRSFFAKAQGLWQSHQSD 255

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
               S++  D+D FK IND  GHP GD+VI   +  L         +GR+GGEEFA    
Sbjct: 256 GRPFSVLMLDLDRFKAINDRHGHPTGDRVIVAFARLLRDAMRHDDLLGRMGGEEFAIILP 315

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
           G +  +A  +A  +R   E  ++    G  + +T+S G+A       +  ++ RAD ALY
Sbjct: 316 GVATAQALEVAERIRAASEAVEVLSDDGFRVRLTVSIGLALGDGATSLDDLMKRADAALY 375

Query: 246 VAKKSGRNRVVC 257
            AK  GRNRVV 
Sbjct: 376 QAKDQGRNRVVM 387


>gi|293610559|ref|ZP_06692859.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826903|gb|EFF85268.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 397

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 78/283 (27%), Positives = 130/283 (45%), Gaps = 26/283 (9%)

Query: 6   KDFLSIWLCHEKNL-ESFSPHTFMIYFS-------------IFFSIFIATVIFIANIFLF 51
             F ++ LCH+  L  S SP T + Y               ++ ++  AT+I     +L 
Sbjct: 110 VQFFALMLCHDGYLIGSISPATMVGYVGTIGVGLVLFDRKIVYSALVPATIILTVCTYLS 169

Query: 52  YIG------LTPFYGLEYILVENLSLVIISITISLLL---GYISGSILKELFISYNRISQ 102
             G      L  F  +++    +  L  ++  I  +L     +   +L +       I +
Sbjct: 170 MTGALAYAPLFNFRAMDHAQTNSFWLGSMAFFIMPILLACFVLFEILLTQWRQRETYIQR 229

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           LS+ID L+ +LN  +    L S +++    ++V  DID+FK+IND +GH  GD+V+  ++
Sbjct: 230 LSQIDPLTNVLNRRSLNMHLESLHQQQFDYAVVLLDIDHFKKINDIYGHHQGDQVLIEIA 289

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L     +   +GR GGEEF      +   +A  +A   R+ ++   +  +    IHI+
Sbjct: 290 QCLSENLRSEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRQALQELPVFTAQNNPIHIS 349

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            S GI+     E    +I +ADQALY  K SGRN+V  F   E
Sbjct: 350 ASFGISSSAFAEDPYLVIRQADQALYAVKASGRNQVRTFHQTE 392


>gi|229170057|ref|ZP_04297748.1| Sensory box protein [Bacillus cereus AH621]
 gi|228613404|gb|EEK70538.1| Sensory box protein [Bacillus cereus AH621]
          Length = 735

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 99/210 (47%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++ + I I   ++  +     +  L+    ++  ++  D L+GL N   F   L
Sbjct: 266 YYYHLHITFIPIFINKEVVGMFGIARDITTLYEKQKQVEHMAFHDALTGLPNRRKFEKDL 325

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 326 KTILNTAQNTTNDVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQ 385

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A+ +A  +  I+  ++  +     + +T S GIA        +
Sbjct: 386 GGDEFTILLPDMYSEKSASFMAEQILTIL--NKPYLIKDEELSVTPSIGIAMYPDYGTDV 443

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR + FS   +
Sbjct: 444 TELMKNADMAMYRAKANGKNRFIFFSKEMS 473


>gi|222098820|ref|YP_002532878.1| hypothetical protein BCQ_5189 [Bacillus cereus Q1]
 gi|221242879|gb|ACM15589.1| conserved hypothetical protein [Bacillus cereus Q1]
          Length = 892

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 423 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 482

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 483 KNILNTAQASANDVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRSCLRSKDVVARQ 542

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++        + IT S GIA        +
Sbjct: 543 GGDEFTILLPDMYSEKSAAFIAEQILNIL--NKPFFIKDEELSITPSIGIAMYPDCGTDV 600

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 601 TALMKNADMAMYRAKANGKNRFVFFSKEMS 630


>gi|53804221|ref|YP_114116.1| sensory box protein [Methylococcus capsulatus str. Bath]
 gi|53757982|gb|AAU92273.1| sensory box protein/GGDEF domain protein [Methylococcus capsulatus
            str. Bath]
          Length = 1346

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 11/203 (5%)

Query: 70   SLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG----- 123
            ++V +      ++ YI   + +  L  +   I  L+  D LS L N    +         
Sbjct: 875  TIVTVRDETGAMVNYIGVAADISSLKEAEEHIHHLAYYDPLSALPNRRYLMERAEYALAL 934

Query: 124  --SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                 E+L++VF D+D+FK +ND+ GH VGD+++  ++ Q+         V RLGG+EFA
Sbjct: 935  AERRKEELAVVFLDVDHFKDVNDSLGHQVGDELLVRVATQIKEFTRETDTVARLGGDEFA 994

Query: 182  AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRA 240
                       + +A+ +   +   +    SG +  +T S GI+   H      T++  A
Sbjct: 995  LLLPDLGRDAVSQVADKILAALR--KPFEHSGQTFAVTGSIGISLYPHDGTDFETLLRNA 1052

Query: 241  DQALYVAKKSGRNRVVCFSDIEN 263
            D A+Y AK+ GRN+   +    N
Sbjct: 1053 DTAMYHAKQQGRNQFRFYDPGMN 1075


>gi|229176024|ref|ZP_04303519.1| Sensory box protein [Bacillus cereus MM3]
 gi|228607456|gb|EEK64783.1| Sensory box protein [Bacillus cereus MM3]
          Length = 677

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 11/206 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 208 YYYYLHVTLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 267

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            +           ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 268 KNILNTAQTSVNDIAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQ 327

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  ++  ++        + IT S GIA        +
Sbjct: 328 GGDEFTILLPDMYSEKSAAFIAEQILTVL--NKPFFIKDEELSITPSIGIAMYPDYGTDV 385

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
           + ++  AD A+Y AK +G+NR + FS
Sbjct: 386 TELMKNADMAMYRAKANGKNRFIFFS 411


>gi|229193601|ref|ZP_04320545.1| Sensory box protein [Bacillus cereus ATCC 10876]
 gi|228589906|gb|EEK47781.1| Sensory box protein [Bacillus cereus ATCC 10876]
          Length = 835

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 366 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 425

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            +           ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 426 KAILNTAQTNANDVAVIFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQ 485

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A  +A  +  I+  ++     G  + IT S GIA        +
Sbjct: 486 GGDEFTILLPEMYSEKSAIFIAEQILTIL--NKPFFIQGEELSITPSIGIAMYPDYGTDV 543

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 544 NELMKNADMAMYRAKANGKNRFVFFSKEMS 573


>gi|229136167|ref|ZP_04264920.1| Sensory box protein [Bacillus cereus BDRD-ST196]
 gi|228647326|gb|EEL03408.1| Sensory box protein [Bacillus cereus BDRD-ST196]
          Length = 735

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++ + I I   ++  +     +  L+    ++  ++  D L+GL N   F   L
Sbjct: 266 YYYHLHITFIPIFINKEVVGMFGIARDITTLYEKQKQVEHMAFHDALTGLPNRRKFEKDL 325

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 326 KTILNLAQNTTNDVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQ 385

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A+ +A  +  I+  ++        + +T S GIA        +
Sbjct: 386 GGDEFTILLPDMYSEKSASFMAEQILTIL--NKPYFIKDEELSVTPSIGIAMYPDYGNDV 443

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR + FS   +
Sbjct: 444 TELMKNADMAMYRAKANGKNRFIFFSKEMS 473


>gi|229076562|ref|ZP_04209522.1| Sensory box protein [Bacillus cereus Rock4-18]
 gi|228706595|gb|EEL58808.1| Sensory box protein [Bacillus cereus Rock4-18]
          Length = 892

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 423 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 482

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 483 KTILNTAQTSANDVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQ 542

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++        + +T S GIA        +
Sbjct: 543 GGDEFTILLPDMYSEKSAAFIAEQILTIL--NKPFFIKDEELSVTPSIGIAMYPDYGTDV 600

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 601 TELMKNADLAMYRAKANGKNRFVFFSKEMS 630


>gi|229099781|ref|ZP_04230706.1| Sensory box protein [Bacillus cereus Rock3-29]
 gi|228683670|gb|EEL37623.1| Sensory box protein [Bacillus cereus Rock3-29]
          Length = 892

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 423 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 482

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 483 KTILNTAQTSANDVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQ 542

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++        + +T S GIA        +
Sbjct: 543 GGDEFTILLPDMYSEKSAAFIAEQILTIL--NKPFFIKDEELSVTPSIGIAMYPDYGTDV 600

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 601 TELMKNADLAMYRAKANGKNRFVFFSKEMS 630


>gi|242279563|ref|YP_002991692.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens
           DSM 2638]
 gi|242122457|gb|ACS80153.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens
           DSM 2638]
          Length = 838

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 10/192 (5%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132
           LL+G      + E     N++ +++  D ++ L N   FI  +         Y+  LS+V
Sbjct: 649 LLIG--VNWDVTESREKENQLRRMATTDDMTKLNNRRYFIELVKSEIERSIRYSRPLSLV 706

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            FD+D FK +ND +GH VGD V+  ++     V      +GRLGGEEFA     +  + A
Sbjct: 707 MFDVDKFKAVNDTYGHDVGDMVLKAIAATAKGVLRDVDIIGRLGGEEFAVGLPETDLKGA 766

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSG 251
            +LA  LR ++E + + +  G  +  T+S G+A        +  ++  AD ALY AK++G
Sbjct: 767 MLLAERLRVVLEEASVELPDGGIVDFTVSLGVAVLDRSITDVDVLLKHADLALYAAKENG 826

Query: 252 RNRVVCFSDIEN 263
           RNRV  ++ + +
Sbjct: 827 RNRVEAYTQMMD 838


>gi|196041007|ref|ZP_03108304.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99]
 gi|196028175|gb|EDX66785.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99]
          Length = 735

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 266 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 325

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH +GD ++  ++ +L     +   V R 
Sbjct: 326 KNILNTAQASANDVAVMFLDLDRFKKINDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQ 385

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++        + IT S GIA        +
Sbjct: 386 GGDEFTILLPDMYSEKSAAFIAEQILNIL--NKPFFIKDEELSITPSIGIAMYPDCGTNV 443

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 444 TELMKNADMAMYRAKANGKNRFVFFSKEMS 473


>gi|218234510|ref|YP_002370125.1| sensory box/GGDEF family protein [Bacillus cereus B4264]
 gi|218162467|gb|ACK62459.1| sensory box/GGDEF family protein [Bacillus cereus B4264]
          Length = 814

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 345 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 404

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            +           ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 405 KAILNTAQTNANDVAVIFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQ 464

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A  +A  +  I+  ++     G  + IT S GIA        +
Sbjct: 465 GGDEFTILLPEMYSEKSAIFIAEQILTIL--NKPFFIQGEELSITPSIGIAMYPDYGTDV 522

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 523 NELMKNADMAMYRAKANGKNRFVFFSKEMS 552


>gi|320159491|ref|YP_004172715.1| hypothetical protein ANT_00810 [Anaerolinea thermophila UNI-1]
 gi|319993344|dbj|BAJ62115.1| hypothetical protein ANT_00810 [Anaerolinea thermophila UNI-1]
          Length = 1051

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 89/184 (48%), Gaps = 14/184 (7%)

Query: 90   LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQ 141
            + E       + +L R D L+G+ N   F +SL             + +++  D+D+FK+
Sbjct: 865  IDERIAVQRELERLVRTDPLTGVFNRGHFFASLDEEFAREQAWERRRYAVILLDVDHFKR 924

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            +ND +GH VGD+ +  ++D L         V R GGEEF      +S  EA  +A  +R+
Sbjct: 925  VNDQYGHLVGDQALITIADILRKNVRMRDIVARYGGEEFVIYMPETSVGEARAVAERIRR 984

Query: 202  IIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCF 258
            +IE     +       +T S GIA +  +E       ++ RAD ALY AK  GRN VV +
Sbjct: 985  VIEEQTRVL---HGFPVTASMGIAVKSSEEEGTRFDEVLQRADTALYTAKHRGRNCVVVY 1041

Query: 259  SDIE 262
             + E
Sbjct: 1042 GEAE 1045


>gi|299768382|ref|YP_003730408.1| GGDEF domain-containing protein [Acinetobacter sp. DR1]
 gi|298698470|gb|ADI89035.1| GGDEF domain-containing protein [Acinetobacter sp. DR1]
          Length = 360

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 76/283 (26%), Positives = 129/283 (45%), Gaps = 26/283 (9%)

Query: 6   KDFLSIWLCHEKNL-ESFSPHTFMIYFS-------------IFFSIFIATVIFIANIFLF 51
             F ++ LCH+  L  S SP T + Y               ++ ++  AT+I     +L 
Sbjct: 73  VQFFTLMLCHDGYLIGSISPATMVGYVGTIGVGLVLFDRKIVYSALVPATIILTVCTYLS 132

Query: 52  YIGLTPFYGLEYILVENL---------SLVIISITISLLLGYISGSILKELFISYNRISQ 102
             G+ P+  L  ++             S+    + I L    +   +L +       I +
Sbjct: 133 MKGVLPYAPLFNLIAMQRAQTNPFWLGSMAFFIMPILLACFILFEILLTQWRQRETYIQR 192

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           LS++D L+ +LN  +  + L S +++    ++V  DID+FK+IND +GH  GD+V+  ++
Sbjct: 193 LSQLDPLTNVLNRRSLNTHLESLHQQQFDYAVVLLDIDHFKKINDIYGHHQGDQVLIEIA 252

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L     +   +GR GGEEF      +   +A  +A   R  ++   +  +    IHI+
Sbjct: 253 QCLSENLRSEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRCALQELPVCSAQNSPIHIS 312

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            S GI+     +    +I +ADQALY  K SGRN+V  F   E
Sbjct: 313 ASFGISSSAFAQDPYLVIRQADQALYAVKASGRNQVRTFHQTE 355


>gi|127511386|ref|YP_001092583.1| diguanylate cyclase [Shewanella loihica PV-4]
 gi|126636681|gb|ABO22324.1| diguanylate cyclase [Shewanella loihica PV-4]
          Length = 323

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/248 (29%), Positives = 119/248 (47%), Gaps = 18/248 (7%)

Query: 32  SIFFSIFIATVIFIANIFLFYIG-LTPFYGLEYILVENLSLVIISIT------ISLLLGY 84
           S+F     A + +    ++F  G   P  G    + +N++L+ +S        IS+++  
Sbjct: 75  SVFLLKNRAFISWEQRPYVFKFGNYRPITGRADFMYQNVTLLPLSSLTGQITHISMIIYD 134

Query: 85  ISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFD 135
           ++   +   +L  +  R+  LS+ D L+ L N   +             Y E  ++V FD
Sbjct: 135 VTDVAINKLQLKAANERLEHLSQTDGLTQLHNRRHWQLCMQKEFDRHARYGEPTTLVMFD 194

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK+IND +GH  GD+VI  +S  L          GR GGEEF+     ++ + A   
Sbjct: 195 IDHFKRINDTYGHIAGDRVIQHVSHILRQSLRDTDCAGRYGGEEFSVVLSNTNAEAALHF 254

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A+ LR+ IE S++   S   + +T+S GI     H    +  + +AD ALY AK+ GRN 
Sbjct: 255 ADRLREKIEASELRFESAI-LKVTVSIGICGIDEHLSNSAQWLGQADSALYQAKQKGRNC 313

Query: 255 VVCFSDIE 262
            V F+  E
Sbjct: 314 CVIFNPDE 321


>gi|325123877|gb|ADY83400.1| sensor histidine kinase [Acinetobacter calcoaceticus PHEA-2]
          Length = 360

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 77/283 (27%), Positives = 130/283 (45%), Gaps = 26/283 (9%)

Query: 6   KDFLSIWLCHEKNL-ESFSPHTFMIYFS-------------IFFSIFIATVIFIANIFLF 51
             F ++ LCH+  L  S SP T + Y               ++ ++  AT+I     +L 
Sbjct: 73  VQFFALMLCHDGYLIGSISPATMVGYVGTIGVGLVLFDRKIVYSALVPATIILTVCTYLS 132

Query: 52  YIG------LTPFYGLEYILVENLSLVIISITISLLL---GYISGSILKELFISYNRISQ 102
             G      L  F  +++    +  L  ++  I  +L     +   +L +       I +
Sbjct: 133 MTGALAYAPLFNFRAMDHAQTNSFWLGSMAFFIMPILLACFVLFEILLTQWRQRETYIQR 192

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           LS+ID L+ +LN  +    L S +++    ++V  DID+FK+IND +GH  GD+V+  ++
Sbjct: 193 LSQIDPLTNVLNRRSLNMHLESLHQQQFDYAVVLLDIDHFKKINDIYGHHQGDQVLIEIA 252

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L     +   +GR GGEEF      +   +A  +A   R+ ++   +  +    IHI+
Sbjct: 253 QCLSENLRSEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRQALQELPVFTAQNNPIHIS 312

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            S GI+     +    +I +ADQALY  K SGRN+V  F   E
Sbjct: 313 ASFGISSSAFAQDPYLVIRQADQALYAVKASGRNQVRTFHQTE 355


>gi|228924095|ref|ZP_04087371.1| Sensory box protein [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228835585|gb|EEM80950.1| Sensory box protein [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 864

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 395 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 454

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            +            +++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 455 KAILNTAQTNANDAAVIFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRSCLRSKDIVARQ 514

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A  +A  +  I+  ++     G  + IT S GIA        +
Sbjct: 515 GGDEFTILLPEMYSEKSAIFIAEQILTIL--NKPFFIQGEELSITPSIGIAMYPDYGTDV 572

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 573 NELMKNADMAMYRAKANGKNRFVFFSKEMS 602


>gi|163784230|ref|ZP_02179155.1| diguanylate cyclase (GGDEF domain) [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880503|gb|EDP74082.1| diguanylate cyclase (GGDEF domain) [Hydrogenivirga sp. 128-5-R1-1]
          Length = 463

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 106/229 (46%), Gaps = 11/229 (4%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           + ++ T I + N+    +G    Y  +      L     +IT+S LL  I G  +     
Sbjct: 237 NFYLITFIPVFNLNNHLMGYLVRYSKDNTYPIILKSFYTNITLSFLLAVILGFSVYIFLK 296

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
              +   LS  D L+GL N   F       I     Y   LS++ FDID+FK+IND +GH
Sbjct: 297 DLEKFRYLSETDRLTGLYNKGKFNEVLQREIQRAKRYKRPLSLIIFDIDHFKKINDTYGH 356

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+V+  L+  +        F  R GGEEF   A  ++ + A  LA  LR+ +E  + 
Sbjct: 357 KVGDEVLKALAKLIKKNIRKTDFAARWGGEEFVILAPETNVEGAKKLAEKLRQAVETYKF 416

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                    +TIS G+A+    E     I RAD ALY AK+ GRNRV  
Sbjct: 417 PTVG----KVTISLGVAQLEPDEKPEDFIVRADMALYKAKEGGRNRVEI 461


>gi|229105940|ref|ZP_04236564.1| Sensory box protein [Bacillus cereus Rock3-28]
 gi|228677514|gb|EEL31767.1| Sensory box protein [Bacillus cereus Rock3-28]
          Length = 881

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 11/206 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 412 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 471

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 472 KTILNTAQTSANDVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQ 531

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++        + +T S GIA        +
Sbjct: 532 GGDEFTILLPDMYSEKSAAFIAEQILTIL--NKPFFIKDEELSVTPSIGIAMYPDYGNDV 589

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
           + ++  AD A+Y AK +G+NR V FS
Sbjct: 590 TELMKNADMAMYRAKANGKNRFVFFS 615


>gi|229118843|ref|ZP_04248192.1| Sensory box protein [Bacillus cereus Rock1-3]
 gi|228664644|gb|EEL20137.1| Sensory box protein [Bacillus cereus Rock1-3]
          Length = 892

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 423 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 482

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 483 KTILNTAQTSANDVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQ 542

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A  +A  +  I+  ++        + +T S GIA        +
Sbjct: 543 GGDEFTILLPDMYSEKSAVFIAEQILTIL--NKPFFIKDEELSVTPSIGIAMYPDYGTDV 600

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 601 TELMKNADLAMYRAKANGKNRFVFFSKEMS 630


>gi|307717794|ref|YP_003873326.1| hypothetical protein STHERM_c00770 [Spirochaeta thermophila DSM
           6192]
 gi|306531519|gb|ADN01053.1| hypothetical protein STHERM_c00770 [Spirochaeta thermophila DSM
           6192]
          Length = 298

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 106/251 (42%), Gaps = 14/251 (5%)

Query: 12  WLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL 71
           WL   +       +   ++  I+  +       +A  F  + G      L    V  L+ 
Sbjct: 51  WLVLLRKEFVQLRYMLTLFLGIWALVVAVWGELLAAAF--WPGSVVIAVLNGFYVVALTG 108

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------S 124
           V I +   +LL  +    + EL     R+ +LS  D L+GL N   F   L         
Sbjct: 109 VTIGV---MLLIRMYRMTISELSEKQRRLIELSITDDLTGLYNARYFYRRLEEEIARSRR 165

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           Y   LS++F D+D FK+ ND +GH  GD+V+  ++  L           R GGEEF    
Sbjct: 166 YGRPLSLLFIDLDDFKRFNDTYGHLAGDRVLRKVARVLRESLRENDSAYRYGGEEFVIIL 225

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +  +E  + A  +R+ IE           + +T S G+ E    + I   + RADQA+
Sbjct: 226 PETGAEEGCVAAERVRRRIEVCSFR--GKEKVKVTASVGVVEYREGDAIEDFVRRADQAM 283

Query: 245 YVAKKSGRNRV 255
           Y AK  G+NR+
Sbjct: 284 YKAKAEGKNRI 294


>gi|299069876|emb|CBJ41158.1| Diguanylate cyclase (GGDEF domain) fused with response regulator
           pleD (Stalked cell differentiation-controlling protein)
           [Ralstonia solanacearum CMR15]
          Length = 467

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 107/248 (43%), Gaps = 15/248 (6%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL 80
           + S   F++        ++A +IF A  FL   G+   +        + S +     +  
Sbjct: 223 ALSSLAFILARPWNHMWWLAHIIFAAGFFLLSYGVVKAFQ----TTRSFSTIYSQEELMT 278

Query: 81  LLGYISGSI---LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLS 130
            LG         L+EL  +++++  L+  D L+GL N   FI  + +            S
Sbjct: 279 RLGEAKARTEDALRELQAAHHKLEHLAATDPLTGLANRREFIGRVEAEIARSRGGPTPFS 338

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D FK IND +GH  GD V+   + + +        V R+GGEEF          
Sbjct: 339 VLALDLDRFKVINDTYGHQAGDHVLQRFAKKCLEAIRPHDGVARVGGEEFMVLLPKVPLH 398

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
            A  +A  +R  I  S   +  G  + +T+S G++E       I  I+  AD+ LY AK 
Sbjct: 399 AAHAIAEQIRTAIAASPFELGPGHVVPVTVSIGVSEFGRDGANIDAILRSADERLYRAKH 458

Query: 250 SGRNRVVC 257
            GRNRV+ 
Sbjct: 459 EGRNRVIA 466


>gi|296238978|gb|ADH01501.1| diguanylate cyclase [Pseudomonas sp. 2663]
          Length = 467

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 107/245 (43%), Gaps = 9/245 (3%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL 80
           + S   F++        ++A  IF A  FL   G+   +       +  S   +   +  
Sbjct: 223 ALSSLAFILGVPWNHMWWLAHAIFAAGFFLLSFGVVQAFHTTRSFSKIYSQGELFARLRE 282

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVF 133
            +G  +   L+EL  +  ++  ++  D L+G  N   FI  + +            S++ 
Sbjct: 283 AMGR-TERALQELQRTNEKLEHMAATDPLTGAANRRQFIDRVEAEIARAKHNGAPFSLLA 341

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D+FK IND++GH  GD+V+     +          V R+GGEEF      ++   A 
Sbjct: 342 LDLDHFKIINDSYGHQAGDRVLQRFVTKCRDAIRPFDGVARVGGEEFMVLLPQAALDTAR 401

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
            +   +R  I  +      G  I +T+S G++E     E I  I+ +AD+ LY AK  GR
Sbjct: 402 SIGERIRAAIAGTPFEADIGQPIEVTVSIGVSEFGRDGETIDAILRKADERLYHAKHQGR 461

Query: 253 NRVVC 257
           NRVV 
Sbjct: 462 NRVVA 466


>gi|195952587|ref|YP_002120877.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932199|gb|ACG56899.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 772

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 60/183 (32%), Positives = 95/183 (51%), Gaps = 11/183 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           +   +   + +     + + + S  D L+G+ N     + L         ++  LS++ F
Sbjct: 593 VAVFTFVDITKEKELSDMLLKQSTEDPLTGIYNRRYLENKLEEYVKLAKRHDRPLSLIMF 652

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK IND+FGH VGDKV+  ++  +           R GGEEF   A  +++++A I
Sbjct: 653 DIDFFKHINDSFGHDVGDKVLKAIAKVVSENIRNTDIFARYGGEEFVIIAPETTKEDAKI 712

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           LA  LR +I N          I++T S G+A     +   T++ RAD+ALY AKK+GRN+
Sbjct: 713 LAEKLRSLIRNLHFE----EGINVTCSFGVASLEKHDTKETLLKRADEALYEAKKTGRNK 768

Query: 255 VVC 257
           VV 
Sbjct: 769 VVV 771


>gi|117618414|ref|YP_857472.1| PAS/GGDEF domain-containing protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559821|gb|ABK36769.1| PAS:GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 809

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 6/176 (3%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQIND 144
             + E       + +L+  D L+ L N       L    E   +L+++F D+D+FK IND
Sbjct: 497 RDITERAAREEMMRRLAFYDPLTNLPNRRLLQQRLKEAMESEAQLALLFIDLDHFKPIND 556

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD ++  +++++         V RLGG+EF      +   EA  +A+ L + + 
Sbjct: 557 TFGHETGDVLLNMVAERMRHCVRERDLVARLGGDEFVILLPDTG-DEALAVADHLHQSLR 615

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                I     + I+ S G+A    H     T+++ ADQA+Y AK  GR RV  F+
Sbjct: 616 -HPFRIDEEQELRISSSIGVALYPEHGTDPKTLMHHADQAMYQAKGRGRGRVCLFT 670


>gi|296505772|ref|YP_003667472.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
 gi|296326824|gb|ADH09752.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
          Length = 892

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 423 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 482

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            +           ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 483 KAILNTAQTNANDVAVIFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQ 542

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A  +A  +  I+  ++     G  + IT S GIA        +
Sbjct: 543 GGDEFTILLPEMYSEKSAIFIAEQILTIL--NKPFFIQGEELSITPSIGIAMYPDYGTDV 600

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 601 NELMKNADMAMYRAKANGKNRFVFFSKEMS 630


>gi|149376778|ref|ZP_01894535.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter algicola DG893]
 gi|149358899|gb|EDM47366.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter algicola DG893]
          Length = 321

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 66/220 (30%), Positives = 109/220 (49%), Gaps = 17/220 (7%)

Query: 57  PFYGLEYILVENLSLVIISI------TISLLLGYIS--GSILKELFISYNRISQLSRIDC 108
           P  G E  + +NL++  +S        I L++  ++   +  + L  +  ++++LS  D 
Sbjct: 101 PITGTEDFMYQNLTISPLSGPDGQVEKICLMVYDVTDIATSKRALETANEQLAKLSMTDR 160

Query: 109 LSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GLLN   +             Y     ++ FDID+FK +ND +GH  GD+VI + +  
Sbjct: 161 LTGLLNRGTWENLIDAEYERYRRYGHNTCLIMFDIDHFKAVNDTYGHLAGDEVIKYTAKV 220

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +          GR GGEEF      +  + A ++   +R+ I+NS +  ++ P I  T+S
Sbjct: 221 MKDNLRQSDSPGRYGGEEFGIILPETDAEGARVICERIREAIQNSTVQTTAAP-IQYTVS 279

Query: 222 AGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            GIA      E     + +AD+ALY AK+ GRNRVV F +
Sbjct: 280 IGIAPLTDRPENHMQWLQQADEALYAAKEGGRNRVVVFGE 319


>gi|119474824|ref|ZP_01615177.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [marine gamma proteobacterium
           HTCC2143]
 gi|119451027|gb|EAW32260.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [marine gamma proteobacterium
           HTCC2143]
          Length = 562

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 71/258 (27%), Positives = 123/258 (47%), Gaps = 10/258 (3%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL 69
            + + H   +   +P    +   +F  + I   +   +  +F         +   +V  L
Sbjct: 292 GLMMPHFSEIGYINPIRIELMAKVFLDLDIVDNLDNLDGLIFESDTGLSSEVRSAIVFIL 351

Query: 70  SLVIISITISLLLGYISGSI---LKELFISYNRISQLSRIDCLSGLLNHSAF-------I 119
           + VI+ + +S LL   +  +   ++E  +   ++  L+  D L+ LLN   F       +
Sbjct: 352 TFVIVLLAVSGLLAIFNRRLQSEIRERKLVEEKLETLAYTDPLTNLLNRRGFSTRYADEL 411

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                Y +  S++  D+D FK++ND +GH  GD+V+  ++D L+       F GR GGEE
Sbjct: 412 MRAQRYGDVFSVILIDLDLFKKVNDQYGHESGDRVLVSVADLLLKDTRETDFCGRFGGEE 471

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F      +S  EA + A  L + I ++ + + +G  + IT SAG+ E   ++     I R
Sbjct: 472 FILLLPNTSLVEATVYARRLCQHIGDNNVRLQNGRLVTITASAGVTEWLSEDKGEATIRR 531

Query: 240 ADQALYVAKKSGRNRVVC 257
           ADQALY AK +GRN+VV 
Sbjct: 532 ADQALYHAKNNGRNQVVA 549


>gi|78043169|ref|YP_359730.1| response regulator/sensory box protein/GGDEF domain-containing
           protein [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995284|gb|ABB14183.1| response regulator/sensory box protein/GGDEF domain protein
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 668

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 85/179 (47%), Gaps = 12/179 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQ 141
            L E      ++ +LS  D L+   N   F   L    E         +++  DID+FK 
Sbjct: 490 DLTERKKLEEQLYRLSITDYLTQAYNRRYFTEMLEREIERAKRTKMPFALIMLDIDHFKN 549

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND FGH  GD V+  L++ +         + R GGEEF      +  ++AA LA +LR+
Sbjct: 550 VNDRFGHAAGDLVLKTLANLIKNRIRQTDCLARWGGEEFVILLPNTPVEKAAGLAEELRE 609

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +   +I         +T S G+   C  + + T++ RADQ LY AK SGRN V  FS+
Sbjct: 610 QLSMLEIPGVG----RVTASFGVTGYCPGDTLDTLLMRADQMLYTAKASGRNCVR-FSE 663


>gi|218782156|ref|YP_002433474.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01]
 gi|218763540|gb|ACL06006.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01]
          Length = 417

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 61/199 (30%), Positives = 97/199 (48%), Gaps = 13/199 (6%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYN 126
           IS+++  ++  +   + + L  +Y  I  +S  D L+ L N   F + L         Y 
Sbjct: 217 ISLSLLSMIWILVSRLARRLTKAYETIEVMSITDELTRLHNRRHFETRLAEEISRSLRYG 276

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             +S++  DID+FK++NDN+GH  GD V+   +  L           R GGEEF      
Sbjct: 277 SPMSLMILDIDHFKRVNDNYGHQAGDWVLTQFATLLKDNVRKADVPARWGGEEFVVILTE 336

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC------HKEPISTIIYRA 240
           S+  +A + A  +R+ +E+++ NI  G SI +T+S G+A                ++  A
Sbjct: 337 STISQARMAAEKVRRNVESAEFNIPDGRSIPVTVSVGVASLDMISGDEMGSEADVLVKTA 396

Query: 241 DQALYVAKKSGRNRVVCFS 259
           D ALY AK+ GRNR V  S
Sbjct: 397 DDALYRAKQEGRNRTVAVS 415


>gi|83745561|ref|ZP_00942619.1| Hypothetical Protein RRSL_04620 [Ralstonia solanacearum UW551]
 gi|207738908|ref|YP_002257301.1| hypothetical protein ggdef [Ralstonia solanacearum IPO1609]
 gi|83727638|gb|EAP74758.1| Hypothetical Protein RRSL_04620 [Ralstonia solanacearum UW551]
 gi|206592279|emb|CAQ59185.1| hypothetical protein ggdef [Ralstonia solanacearum IPO1609]
          Length = 467

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 107/248 (43%), Gaps = 15/248 (6%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL 80
           + S   F++        ++A  IF A  FL   G+   +        + S +     +  
Sbjct: 223 ALSSLAFILGRPWNHMWWLAHAIFAAGFFLLSYGVVKAFQ----TTRSFSTIYSQEELMT 278

Query: 81  LLGYISGSI---LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLS 130
            LG         L+EL  +++++  L+  D L+GL N   FI  + +            S
Sbjct: 279 RLGEAKARTEDALRELQAAHHKLEHLAATDPLTGLANRREFIGRVEAEIANANHAGAPFS 338

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D FK IND +GH  GD V+   + + +        V R+GGEEF          
Sbjct: 339 VLALDLDRFKAINDTYGHQAGDHVLQRFAKKCLEAIRPHDGVARVGGEEFMVLLPKIPLS 398

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
            A  +A  +R  I  S   +  G ++ +T+S G++E       I  I+  AD+ LY AK 
Sbjct: 399 AAHDIAERIRTAIAASPFELGPGHAVPLTVSIGVSEFGRDGSDIDAILRSADERLYRAKH 458

Query: 250 SGRNRVVC 257
            GRNRV+ 
Sbjct: 459 EGRNRVIA 466


>gi|291294812|ref|YP_003506210.1| diguanylate cyclase [Meiothermus ruber DSM 1279]
 gi|290469771|gb|ADD27190.1| diguanylate cyclase [Meiothermus ruber DSM 1279]
          Length = 373

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 118/252 (46%), Gaps = 19/252 (7%)

Query: 22  FSPHTFMIYFSIFF---SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITI 78
           + P  +++ F++     ++  + V  +  +    +G+     +    +        S   
Sbjct: 119 WFPMVYLMAFNLLNRRQALRFSLVYLVLGLLAGAVGMLMSPSINVSSINTALQFTFSNIA 178

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
            L L Y+       L   Y ++ Q++  D L+ L N  A        +     YN   ++
Sbjct: 179 YLALLYMFAY----LRRHYAQMHQMAHTDALTNLTNRRAMQQKLEGELDRARRYNRPFAL 234

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  D+D+FKQIND +GH VGD+V+  ++ +L         + R GGEEF   A  +  Q+
Sbjct: 235 LLADLDHFKQINDTYGHSVGDQVLREVAGRLAQHLRESDSLARWGGEEFLILAPETDLQQ 294

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A +LA  L   I  S I+      + +T+S G+A     + I+ ++ RAD+A+Y AK  G
Sbjct: 295 AYLLAQRLLGAIRESPIS-----GVQVTLSLGVACYRQGDSIAALLSRADEAMYRAKAGG 349

Query: 252 RNRVVCFSDIEN 263
           RN++V   ++E+
Sbjct: 350 RNQIVLEEELED 361


>gi|85711449|ref|ZP_01042507.1| GGDEF domain protein [Idiomarina baltica OS145]
 gi|85694601|gb|EAQ32541.1| GGDEF domain protein [Idiomarina baltica OS145]
          Length = 364

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 65/253 (25%), Positives = 122/253 (48%), Gaps = 16/253 (6%)

Query: 25  HTFMIYF--SIFFSIFI-ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISI----- 76
           H F++ F  +IF S+ +   V+ +  ++++Y+ L  F      +    +  ++ +     
Sbjct: 98  HYFLLMFVPAIFVSMSLKPAVLTLLGLWVYYLSLDLFSWYYPAMQPINATAVVGVHIFNL 157

Query: 77  -TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEK 128
             + ++ GY++   L ++ ++++++   +  D L+ L N       L             
Sbjct: 158 TVVFIMFGYLALYYLNKVNLTHDQLRFYATTDPLTKLRNRRHMSELLKRALQNKHAEQRN 217

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +S++  D+D+FK +ND  GH VGDKV+   +D L         V R GGEEF      ++
Sbjct: 218 VSVLLLDLDHFKSVNDTHGHEVGDKVLRITADILRDTVRDHDKVSRWGGEEFLVFLPRTN 277

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
              AA +A  +RK I     +     +I +T S G++E    + ++T++ RAD ALY  K
Sbjct: 278 LNHAAQVAERIRKAIAKYPWHTVINENIQLTTSIGVSELKPDDSVNTLVKRADDALYRGK 337

Query: 249 KSGRNRVVCFSDI 261
           ++GRN V   S+ 
Sbjct: 338 EAGRNWVELESEA 350


>gi|307720349|ref|YP_003891489.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978442|gb|ADN08477.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica
           DSM 16294]
          Length = 422

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 60/179 (33%), Positives = 92/179 (51%), Gaps = 11/179 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           + + +        ++ +L+ ID L+ + N      ++         Y E   I  FDID 
Sbjct: 247 TSTDITSRIKMEKKLKKLATIDSLTKIYNRYKIDEAINIQIARYRRYKEPFCIFMFDIDN 306

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND +GH  GD+V+  LS  +     T    GR GGEEF      +S++EA ++   
Sbjct: 307 FKTVNDTYGHDAGDRVLKALSRLVSNHIRTTDIFGRWGGEEFVIILENTSKEEAFVITEK 366

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           LRKI+E S I+        ITIS G+A+    E    ++ +AD+ALY AK++GRN+VV 
Sbjct: 367 LRKIVEVSVID----GKYKITISIGVAQYEESESREELVKKADKALYRAKENGRNQVVA 421


>gi|52140213|ref|YP_086617.1| sensory box/GGDEF family protein [Bacillus cereus E33L]
 gi|51973682|gb|AAU15232.1| sensory box/GGDEF family protein [Bacillus cereus E33L]
          Length = 892

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 423 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 482

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 483 KNILNTAQASANDVAVMFLDLDRFKKINDRLGHGVGDLLLIEVAKRLRGCLRSKDVVARQ 542

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++        + IT S GIA        +
Sbjct: 543 GGDEFTILLPDMYSEKSAAFIAEQILNIL--NKPFFIKDEELSITPSIGIAMYPDCGTDV 600

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 601 TELMKNADMAMYRAKANGKNRFVFFSKEMS 630


>gi|300864101|ref|ZP_07109000.1| Response regulator receiver modulated diguanylate cyclase
           [Oscillatoria sp. PCC 6506]
 gi|300337917|emb|CBN54146.1| Response regulator receiver modulated diguanylate cyclase
           [Oscillatoria sp. PCC 6506]
          Length = 315

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 60/196 (30%), Positives = 95/196 (48%), Gaps = 12/196 (6%)

Query: 72  VIISITISLLLGYISGSI---LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121
           +++ +   L L Y+   +   L+E       +  L+  D L+G+ N           I  
Sbjct: 118 LLVRVRTHLELKYMREQLKKSLQEQAQLTKELQNLANTDPLTGVWNRRYLLTLCEAEIER 177

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              YN   S++  D+D FKQIND +GH VGD+V+  ++  +        F GR GGEEF 
Sbjct: 178 ACRYNHLFSVLMLDLDRFKQINDIYGHSVGDEVLIGMTKIVKNSLRKVDFWGRFGGEEFV 237

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRA 240
                ++   A  +A  +R  +E ++  I     + IT+S G++      + I  ++ RA
Sbjct: 238 VILPETNLDSAVDVAERIRATLEKTEFPIQE-KQVKITVSIGVSTYQLEDQKIDLVLQRA 296

Query: 241 DQALYVAKKSGRNRVV 256
           D+ALY AK  GRNRVV
Sbjct: 297 DKALYQAKNQGRNRVV 312


>gi|229164297|ref|ZP_04292229.1| Sensory box protein [Bacillus cereus R309803]
 gi|228619180|gb|EEK76074.1| Sensory box protein [Bacillus cereus R309803]
          Length = 730

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 261 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 320

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            +           ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R 
Sbjct: 321 KAMLTTAQTSANDIAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQ 380

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A+ +A  +  I+  ++        + IT S GIA        +
Sbjct: 381 GGDEFTILLPDMYSEKSASFIAEQILTIL--NKPFFIKDEELSITPSIGIAMYPDYGTNV 438

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 439 TELMKNADMAMYCAKANGKNRFVFFSKEMS 468


>gi|300698180|ref|YP_003748841.1| diguanylate cyclase [Ralstonia solanacearum CFBP2957]
 gi|299074904|emb|CBJ54473.1| Diguanylate cyclase (GGDEF domain) fused with response regulator
           pleD (Stalked cell differentiation-controlling protein)
           [Ralstonia solanacearum CFBP2957]
          Length = 467

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 108/248 (43%), Gaps = 15/248 (6%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL 80
           + S   F++        ++A  IF A  FL   G+   +        + S +     +  
Sbjct: 223 ALSSLAFILGRPWNHMWWLAHAIFAAGFFLLSYGVVKAFQ----TTRSFSTIYSQEELMT 278

Query: 81  LLGYISGSI---LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLS 130
            LG         L+EL  +++++  L+  D L+GL N   FI  + +        +   S
Sbjct: 279 RLGEAKARTEDALRELQAAHHKLEHLAATDPLTGLANRREFIGRVEAEIANAGHASAPFS 338

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D FK IND +GH  GD V+   + + +        V R+GGEEF          
Sbjct: 339 VLALDLDRFKAINDTYGHQAGDHVLQRFAKKCLEAIRPHDGVARVGGEEFMVLLPKVPLN 398

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
            A  +A  +R  I  S   +  G ++ +T+S G++E       I  I+  AD+ LY AK 
Sbjct: 399 AAHAIAERIRTAIAASPFELEPGHAVALTVSIGVSEFGRDGSDIDAILRSADERLYRAKH 458

Query: 250 SGRNRVVC 257
            GRNRV+ 
Sbjct: 459 EGRNRVIA 466


>gi|254491577|ref|ZP_05104756.1| GGDEF domain protein [Methylophaga thiooxidans DMS010]
 gi|224463055|gb|EEF79325.1| GGDEF domain protein [Methylophaga thiooxydans DMS010]
          Length = 462

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 69/216 (31%), Positives = 106/216 (49%), Gaps = 13/216 (6%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLG--YISGSILKELFISYNRISQLSRIDCL 109
           ++ L+ F+    +      L++I++ ++L      +     +EL     ++ QLS+ D L
Sbjct: 251 WLSLS-FHQNVDLTWLWRMLIVIAVVVALFFYRYLLVNQHNRELQRVNKKLEQLSQRDHL 309

Query: 110 SGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +G+ N      +          Y    +IV  DID FKQIND++GH VGD VI  ++  L
Sbjct: 310 TGIHNRYYLDQAFQQELTRYKRYQHGFTIVMLDIDLFKQINDSYGHVVGDDVIKQIAMLL 369

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                    V R GGEEF      +S   A  LA  LR++I  +   +     I +T+S 
Sbjct: 370 REHVRDQDVVARWGGEEFLILNPETSLDGARTLAEHLRRLIRRTPFTVD---KIDVTVSF 426

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           G+ +    E I T+I RAD ALY AK+SGR++ V F
Sbjct: 427 GVTDYRAGEDIETMIQRADSALYQAKQSGRDKTVVF 462


>gi|30265372|ref|NP_847749.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames]
 gi|47530915|ref|YP_022264.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188183|ref|YP_031436.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne]
 gi|30260050|gb|AAP29235.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames]
 gi|47506063|gb|AAT34739.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182110|gb|AAT57486.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne]
          Length = 892

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 423 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 482

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH +GD ++  ++ +L     +   V R 
Sbjct: 483 KNILNTAQASANDVAVMFLDLDRFKKINDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQ 542

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++        + IT S GIA        +
Sbjct: 543 GGDEFTILLPDMYSEKSAAFIAEQILNIL--NKPFFIKDEELSITPSIGIAMYPDCGTDV 600

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 601 TELMKNADMAMYRAKANGKNRFVFFSKEMS 630


>gi|118480382|ref|YP_897533.1| diguanylate cyclase/phosphodiesterase [Bacillus thuringiensis str.
           Al Hakam]
 gi|118419607|gb|ABK88026.1| diguanylate cyclase/phosphodiesterase [Bacillus thuringiensis str.
           Al Hakam]
          Length = 910

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 441 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 500

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH +GD ++  ++ +L     +   V R 
Sbjct: 501 KNILNTAQASANDVAVMFLDLDRFKKINDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQ 560

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++        + IT S GIA        +
Sbjct: 561 GGDEFTILLPDMYSEKSAAFIAEQILNIL--NKPFFIKDEELSITPSIGIAMYPDCGTDV 618

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 619 TELMKNADMAMYRAKANGKNRFVFFSKEMS 648


>gi|115376279|ref|ZP_01463519.1| diguanylate cyclase [Stigmatella aurantiaca DW4/3-1]
 gi|115366704|gb|EAU65699.1| diguanylate cyclase [Stigmatella aurantiaca DW4/3-1]
          Length = 614

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 13/183 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           KEL      +  LSR D L+ L N   F   L         Y   LS+V  DID+FK+IN
Sbjct: 432 KELARKREELLTLSRTDPLTSLSNRRYFEERLAEEFARARRYRSPLSLVMLDIDHFKRIN 491

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHP GD+V+  ++            + R GGEE  A    +S  +A      +R+ I
Sbjct: 492 DTYGHPFGDEVLRAVALVSRTRLREVDLLARYGGEELIALLPETSPADALRACERVREAI 551

Query: 204 ENSQINISS----GPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           E+ +++  +       +  T S G+A       +    ++  AD+ LY AK++GRNRV  
Sbjct: 552 ESLRLDYRASDGTSQKVSCTASLGLASLPSVPLQTAEDLLRAADECLYKAKEAGRNRVRQ 611

Query: 258 FSD 260
           + +
Sbjct: 612 YEE 614


>gi|49478974|ref|YP_039341.1| hypothetical protein BT9727_5032 [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330530|gb|AAT61176.1| conserved hypothetical protein, PAS/PAC domain, EAL domain, GGDEF
           domain [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 892

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 423 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 482

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH +GD ++  ++ +L     +   V R 
Sbjct: 483 KNILNTAQASANDVAVMFLDLDRFKKINDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQ 542

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++        + IT S GIA        +
Sbjct: 543 GGDEFTILLPDMYSEKSAAFIAEQILNIL--NKPFFIKDEELSITPSIGIAMYPDCGTDV 600

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 601 TELMKNADMAMYRAKANGKNRFVFFSKEMS 630


>gi|301056816|ref|YP_003795027.1| hypothetical protein BACI_c53430 [Bacillus anthracis CI]
 gi|300378985|gb|ADK07889.1| conserved hypothetical protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 892

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 423 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 482

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH +GD ++  ++ +L     +   V R 
Sbjct: 483 KNILNTAQASANDVAVMFLDLDRFKKINDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQ 542

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ AA +A  +  I+  ++        + IT S GIA        +
Sbjct: 543 GGDEFTILLPDMYSEKSAAFIAEQILNIL--NKPFFIKDEELSITPSIGIAMYPDCGTDV 600

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 601 TELMKNADMAMYRAKANGKNRFVFFSKEMS 630


>gi|75759044|ref|ZP_00739151.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74493443|gb|EAO56552.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 931

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 462 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 521

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            +           ++++F D+D FK+IND  GH VGD ++  ++++L     +   V R 
Sbjct: 522 KAILNTAQTNANDVAVMFLDLDRFKKINDRLGHDVGDLLLIEVANRLRGCLRSKDVVARQ 581

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A  +A  +  I+  ++     G  + IT S GIA        +
Sbjct: 582 GGDEFTILLPEMYSEKSAIFIAEQILTIL--NKPFFIQGEELSITPSIGIAMYPDYGTDV 639

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 640 NELMKNADMAMYRAKANGKNRFVFFSKEMS 669


>gi|163750477|ref|ZP_02157716.1| sensory box/GGDEF family protein [Shewanella benthica KT99]
 gi|161329798|gb|EDQ00786.1| sensory box/GGDEF family protein [Shewanella benthica KT99]
          Length = 321

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 70/218 (32%), Positives = 108/218 (49%), Gaps = 17/218 (7%)

Query: 57  PFYGLEYILVENLSLVIISIT------ISLLLGYISGSILK--ELFISYNRISQLSRIDC 108
           P  G    + +N++L+ +S        IS+++  ++   +   +L     R+  LS+ D 
Sbjct: 101 PITGRADFMYQNVTLLPLSSLTGQITHISMIVYDVTDVAIHKLQLKAVNERLEHLSQTDG 160

Query: 109 LSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ L N   +             Y +K S+V FDID+FK++ND +GH  GDKVI  +S  
Sbjct: 161 LTQLHNRRYWQICMQKEFDRHARYGDKTSLVMFDIDHFKKVNDTYGHMAGDKVIQHISHL 220

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L          GR GGEEFA     +S ++A   A  LR  I  +++ I  G  I +T+S
Sbjct: 221 LKQSLRETDCAGRYGGEEFAVVLAKTSAKDALNFAERLRHKIATTEL-IYEGEPIKVTVS 279

Query: 222 AGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            GI++   +       +  ADQALY AKK+GRN  V +
Sbjct: 280 IGISDLQEQIGNSGQWLSFADQALYQAKKAGRNNCVIY 317


>gi|322433804|ref|YP_004216016.1| diguanylate cyclase with beta propeller sensor [Acidobacterium sp.
            MP5ACTX9]
 gi|321161531|gb|ADW67236.1| diguanylate cyclase with beta propeller sensor [Acidobacterium sp.
            MP5ACTX9]
          Length = 1095

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 8/172 (4%)

Query: 91   KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
            ++L ++  ++ QL+  D L+ L N   F+                 S++  DID+FK +N
Sbjct: 912  RQLELANLKLGQLAIRDSLTNLYNRRHFLDLAEAEYLRSRRSQRTFSLLLMDIDHFKLVN 971

Query: 144  DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            D +GH  GD VI  ++D++           R GGEE+      +S  +A  LA  +R+ +
Sbjct: 972  DTWGHFTGDAVIQMVADRISSSLRATDTAARFGGEEYIVLLPETSSPQAIQLAERIREAV 1031

Query: 204  ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              S +  ++   I IT+S G AE      ++ ++ RAD+ALY AK +GRNR+
Sbjct: 1032 AASPLQTTA-QDIAITLSIGCAEFDPNATLTQLLERADKALYAAKNAGRNRI 1082


>gi|288958189|ref|YP_003448530.1| hypothetical protein AZL_013480 [Azospirillum sp. B510]
 gi|288910497|dbj|BAI71986.1| hypothetical protein AZL_013480 [Azospirillum sp. B510]
          Length = 516

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 17/212 (8%)

Query: 56  TPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH 115
           +PF+ L  +       VI  + ++L   Y       E       +  ++  D L+G+ N 
Sbjct: 311 SPFWTLFTVNQA----VIQGVAVNLAWIY----DYTERRSMEEALRDMASRDPLTGIYNR 362

Query: 116 SAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            +F+            ++E LS+   D+D+FK+IND FGH  GD  +  ++     +   
Sbjct: 363 RSFMEMARSQLARAHRFHEPLSVFVLDVDHFKRINDTFGHATGDDALRMVAAGCQAILRE 422

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ER 227
              +GRLGGEEF     G++  E+ ++A  +R+ +    I    G +  +T+S GIA   
Sbjct: 423 YDILGRLGGEEFVVVLPGATADESRVVAERVRRHLARMPIEAPDG-TFRLTVSIGIAGLE 481

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              + +   I+RAD ALY AK  GRNRV  F 
Sbjct: 482 GATDTLERAIHRADLALYRAKHLGRNRVTVFE 513


>gi|260557891|ref|ZP_05830104.1| GGDEF family protein [Acinetobacter baumannii ATCC 19606]
 gi|260408682|gb|EEX01987.1| GGDEF family protein [Acinetobacter baumannii ATCC 19606]
          Length = 397

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 81/282 (28%), Positives = 128/282 (45%), Gaps = 26/282 (9%)

Query: 6   KDFLSIWLCHEKNL-ESFSPHTFMIYFS------------IFFSIFI-ATVIFIANIFLF 51
                + LCH+  L  S SP T + Y              I +S FI AT+I     +L 
Sbjct: 110 VQAFMLMLCHDGYLIGSISPATMVGYVGTIGVGLVLFERKIVYSAFIPATIILAVCTYLS 169

Query: 52  YIGLTP------FYGLEYILVENLSL--VIISITISLLLGYISGSIL-KELFISYNRISQ 102
             G  P      F  +E+       L  ++  I   L+  +I   IL  +       I +
Sbjct: 170 MSGTVPYAPLFNFKAMEHAQTNPFWLGSMLFFIMPILVACFILFEILLTQWRQRETYIQR 229

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           LS+ID L+ +LN  +  + L + +E+    +++  DID+FK+IND +GH  GD+V+  ++
Sbjct: 230 LSQIDPLTNVLNRRSLNTHLEALHEQRFDYAVILLDIDHFKKINDIYGHHQGDQVLIEIA 289

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         +GR GGEEF      +   +A  +A   R+ ++   I  +    IH++
Sbjct: 290 RCLSENLRNEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRQALQELTIFNNQNIQIHVS 349

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            S GI+          +I +ADQALY  K SGRN+V  F  +
Sbjct: 350 ASFGISSSAFANDPYLVIRQADQALYAVKASGRNQVRTFHQL 391


>gi|71906314|ref|YP_283901.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71845935|gb|AAZ45431.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 925

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 85/184 (46%), Gaps = 11/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + EL  +  RI  L+  D L+ L N  +    L            +L+++  D+D FK 
Sbjct: 458 DISELKATQERIRHLAHHDTLTNLANRFSLHEKLAQALAFCKRNRMQLALMLIDLDRFKT 517

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           IND  GH  GD+++  ++ +L         V RLGG+EF  A  G  S  +AA LA+D+ 
Sbjct: 518 INDTLGHQAGDELLVQVAKRLSHAVRESDIVARLGGDEFVIALPGIGSPADAAHLADDIT 577

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
           + I  S   +  G  +  + S GI         I  ++  AD A+Y AK +GR     F+
Sbjct: 578 REI--SAPYLIKGQELRTSPSIGICVYPGDGSEIGDLLKNADVAMYHAKANGRGNYQFFT 635

Query: 260 DIEN 263
           +  N
Sbjct: 636 EDMN 639


>gi|77456278|ref|YP_345783.1| putative diguanylate cyclase [Pseudomonas fluorescens Pf0-1]
 gi|77380281|gb|ABA71794.1| conserved GGDEF domain protein [Pseudomonas fluorescens Pf0-1]
          Length = 696

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 62/184 (33%), Positives = 88/184 (47%), Gaps = 11/184 (5%)

Query: 82  LGYISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           L      + +E       + +    + ID L+GL N +A+   L         +   LS+
Sbjct: 511 LAERVAHMEQEALGYREHLEEQRQKALIDPLTGLPNRAAWTERLEHEIAQWQQHGNTLSL 570

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK+INDN+GH  GDKV+  ++  L        F+ R GGEEF      +    
Sbjct: 571 AMLDLDHFKRINDNYGHLAGDKVLKIIATVLRKRMRGNDFIARFGGEEFVLLLPATPPAV 630

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
            A L  +LR  IE    +   G  + ITIS G+A     E    ++ RADQALY AK +G
Sbjct: 631 GAKLLENLRASIEACPFHFK-GERVTITISMGLAAFRPGEHSDLVLKRADQALYRAKNAG 689

Query: 252 RNRV 255
           RNRV
Sbjct: 690 RNRV 693


>gi|120555850|ref|YP_960201.1| sensor diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120325699|gb|ABM20014.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 571

 Score =  211 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 15/244 (6%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLT-PFYGLEYILVENLSLVIISITISLLLG 83
           H  + +F +  + F   V+F     L+Y GL  P Y   + +   + +V+ ++T++ ++ 
Sbjct: 325 HPLVKFFLVGHTFF---VVFNGFAVLYYKGLVQPNYINSHGV--GIGIVLEALTLAFIIS 379

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDI 136
           Y    +L+++    + + + +  D L+ L N   F+           +  E LS++  DI
Sbjct: 380 YRI-KVLEDIRSKQDELKRQASTDPLTRLFNRRYFMAEGEYVLEQARTSGEPLSVIAIDI 438

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK +ND  GH VGD V+  ++            V R GGEEF     G+   E    A
Sbjct: 439 DHFKAVNDTHGHNVGDLVLVEVASVFRQFSRDRDLVARFGGEEFVILLPGADLTEGFGCA 498

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
             +R  +E   I+   G ++ +T+S G+AE     E +   + RAD++LY AK  GRNRV
Sbjct: 499 ERIRNAVEAMVIDGGDGLAVRVTVSVGVAEVNPLLESVEGAVKRADRSLYEAKAGGRNRV 558

Query: 256 VCFS 259
             F 
Sbjct: 559 CGFD 562


>gi|134299209|ref|YP_001112705.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Desulfotomaculum reducens
           MI-1]
 gi|134051909|gb|ABO49880.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Desulfotomaculum reducens MI-1]
          Length = 947

 Score =  211 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 22/218 (10%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           LT F  L  I ++N +L              +   L E       +  L+  D L+ L N
Sbjct: 478 LTGFAQLASIALDNANLY-----------QAAQQELAERKRIEEILRYLAYHDSLTELPN 526

Query: 115 HSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
            + F   L            KL+++F D+D+FK++ND  GH +GD+++  ++ +   +  
Sbjct: 527 RTLFNDRLSMALNQAHRNKNKLAVMFLDLDHFKKVNDTLGHDIGDQLLKGIAQRFSKLLR 586

Query: 168 TPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
               + R+GG+EF       +  E A+I+A+ +   + N    I      HIT S GIA 
Sbjct: 587 KGDTIARIGGDEFTILLHNITRAENASIVADKIIDTLAN--PWIIGNHEFHITTSIGIAL 644

Query: 227 RCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                    +++  AD A+Y AK+ GRN    ++   N
Sbjct: 645 YPDDGTDAESLLKNADAAMYQAKEMGRNNYQFYTPTMN 682


>gi|163783658|ref|ZP_02178646.1| hypothetical protein HG1285_12742 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881063|gb|EDP74579.1| hypothetical protein HG1285_12742 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 345

 Score =  211 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 88/175 (50%), Gaps = 9/175 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           ++ L     R+ + + ID L+GL N  +F  +L         +    S++  D+D FKQI
Sbjct: 171 IERLREELRRVKEEANIDPLTGLRNRRSFERALSEFFRDFKKFGYPFSVIMIDLDNFKQI 230

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GDKV+  + + L           R GGEEF     G + +EA ++A  LRK+
Sbjct: 231 NDTYGHLAGDKVLKEIGNILRNYLRAKDVPARTGGEEFTIILPGITREEALMVAERLRKV 290

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           I N  +       I+ T S G+AE   + E    ++  AD+ LY AK+ G+N VV
Sbjct: 291 IANYTVEHED-KKINPTASFGVAEVNEQVETPEDLLRLADENLYKAKRRGKNTVV 344


>gi|317121578|ref|YP_004101581.1| diguanylate cyclase with GAF sensor [Thermaerobacter marianensis
           DSM 12885]
 gi|315591558|gb|ADU50854.1| diguanylate cyclase with GAF sensor [Thermaerobacter marianensis
           DSM 12885]
          Length = 562

 Score =  211 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 14/188 (7%)

Query: 81  LLGYISGSILKELFISY--NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSI 131
           LL  I+  +   L  +    R+ Q +  D L+GL N +  +  L         Y   LS+
Sbjct: 361 LLTAIADEVAVALERARLLERVEQQAITDPLTGLYNRTYLVERLREEGERAARYGRPLSL 420

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +F D+D  K IND  GH  GD+V+  ++  L     +  F  R GG+EF      +  + 
Sbjct: 421 LFIDLDDLKVINDRLGHDAGDRVLVRVARVLREACRSVDFAARYGGDEFVVVLPETGPEG 480

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
           A  +A  +++ +      +++G    +  S G+A    H    + ++  ADQA+Y AK+ 
Sbjct: 481 AMAVAARIQQRLAEQTSPLAAG----LGASIGLAAYPAHARDWTELLRLADQAMYGAKRR 536

Query: 251 GRNRVVCF 258
           G+ RV  F
Sbjct: 537 GKGRVGWF 544


>gi|313200646|ref|YP_004039304.1| diguanylate cyclase [Methylovorus sp. MP688]
 gi|312439962|gb|ADQ84068.1| diguanylate cyclase [Methylovorus sp. MP688]
          Length = 487

 Score =  211 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 64/194 (32%), Positives = 102/194 (52%), Gaps = 9/194 (4%)

Query: 72  VIISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLG 123
           + I++ I LLL  ++  +    L     +I  ++  D L+ L N  AF       +    
Sbjct: 289 LYINLGICLLLTALAVYLTNLALKRYQTQIETMATTDSLTHLPNRKAFEIIIDVIMQERI 348

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            Y + L+++  DID+FKQIND  GH  GD+V+  ++  +     +  FV R GGEEF   
Sbjct: 349 RYGKDLAVILLDIDHFKQINDRHGHFAGDQVLTEVALIIRSCLRSVDFVCRWGGEEFLIL 408

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
               SE+ A +LA  +R+ +E   ++  + P IH+T S G+A   + E I  ++ RAD A
Sbjct: 409 LKDCSERNARLLAEKIRETLETRPVDHKNVP-IHLTASLGVAMVQNGERIEQVLERADYA 467

Query: 244 LYVAKKSGRNRVVC 257
           +Y AK  GRN+V+ 
Sbjct: 468 MYQAKALGRNQVIF 481


>gi|207722429|ref|YP_002252865.1| hypothetical protein ggdef [Ralstonia solanacearum MolK2]
 gi|206587608|emb|CAQ18190.1| hypothetical protein ggdef [Ralstonia solanacearum MolK2]
          Length = 467

 Score =  211 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 108/248 (43%), Gaps = 15/248 (6%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL 80
           + S   F++        ++A  IF A  FL   G+   +        + S +     +  
Sbjct: 223 ALSSLAFILGRPWNHMWWLAHAIFAAGFFLLSYGVVKAFQ----TTRSFSTIYSQEELMT 278

Query: 81  LLGYISGSI---LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLS 130
            LG         L+EL  +++++  L+  D L+GL N   FI  + +        +   S
Sbjct: 279 RLGEAKAKTEDALRELQAAHHKLEHLAATDPLTGLANRREFIGRVEAEIANANHVSAPFS 338

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D FK IND +GH  GD V+   + + +        V R+GGEEF          
Sbjct: 339 VLALDLDRFKAINDTYGHQAGDHVLQRFAKKCLEAIRPHDGVARVGGEEFMVLLPKVPLN 398

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
            A  +A  +R  I  S   +  G ++ +T+S G++E       I  I+  AD+ LY AK 
Sbjct: 399 AAHAIAERIRTAIAASPFELGPGRAVPLTVSIGVSEFGRDGSDIDAILRSADERLYRAKH 458

Query: 250 SGRNRVVC 257
            GRNRV+ 
Sbjct: 459 EGRNRVIA 466


>gi|163782872|ref|ZP_02177868.1| hypothetical protein HG1285_16091 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881993|gb|EDP75501.1| hypothetical protein HG1285_16091 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 475

 Score =  211 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 91/167 (54%), Gaps = 8/167 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  D L+GL N   F+ +          Y E LS++  DID FK INDN+GH VGD V+ 
Sbjct: 307 AYTDPLTGLNNRRFFMENARTIIDLSKRYREPLSLLMMDIDNFKSINDNYGHDVGDLVLK 366

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            L++ +     T     R GGEEF      + E+ A ++A  +R    NS + +  G  I
Sbjct: 367 KLAEVIRKNVRTSDIPARFGGEEFVVLLPRTDEKGALMVAERIRNEFRNSSVKV-DGKDI 425

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             ++S G++    ++ I ++I +AD+ALY AK+SG++RVV + + + 
Sbjct: 426 WTSVSIGLSVLSEEDDIDSLIKKADEALYQAKRSGKDRVVIYREEDQ 472


>gi|148262949|ref|YP_001229655.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter uraniireducens Rf4]
 gi|146396449|gb|ABQ25082.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter uraniireducens Rf4]
          Length = 709

 Score =  211 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 97/227 (42%), Gaps = 20/227 (8%)

Query: 58  FYGLEYILVENLSLVIISITISLLLG-------YISGS-ILKELFISYNRISQLSRIDCL 109
           ++G  +   +N  L   S +IS +         +I+    + E   +   I Q++  D L
Sbjct: 216 WWGEFHNRKKNGELYWASASISPITNGNEQITHFIAFQEDITERKQAEETIKQMAYYDTL 275

Query: 110 SGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GL N   F             +N  L+++F D+D FK IND  GH VGD+++   + +L
Sbjct: 276 TGLPNRHLFNELMHLALAQAHRHNRLLAVLFLDLDRFKHINDTLGHTVGDQLLQASAHRL 335

Query: 163 VVVFGTP-MFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITI 220
                     V R GG+EF        + QEA  +A  +      +Q+ +     + I+ 
Sbjct: 336 KECCRRDRDTVARRGGDEFIILLPDIDDVQEAVRVAQKIIDAF--TQVFVLPDIELFIST 393

Query: 221 SAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             GI+          T+I  AD A+Y AK+ GR+R   ++   +   
Sbjct: 394 CIGISIFPNDGRDTETLIKNADMAMYRAKEQGRSRYHLYTSSMDEQA 440


>gi|124265854|ref|YP_001019858.1| signal transduction protein [Methylibium petroleiphilum PM1]
 gi|124258629|gb|ABM93623.1| signal transduction protein [Methylibium petroleiphilum PM1]
          Length = 1006

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 94/196 (47%), Gaps = 9/196 (4%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           +L   +    + E      ++S L+  D L+GL N   F   +         +  + +++
Sbjct: 549 VLGAVMVFQDVTEARGLAQKMSYLAHHDGLTGLPNRVLFQDRVHQACQSGRRHGRRFAVI 608

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F D+D+FK +ND+ GH VGD+++  ++ +L         + RLGG+EF        + E 
Sbjct: 609 FMDLDHFKHVNDSLGHAVGDELLKAVAQRLTGALRASDTICRLGGDEFVVLLSDLDDVEV 668

Query: 193 AILANDLRKIIEN-SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
             +A   +KI+   +Q  +  G  +++  S GIA      E   T++ RAD A+Y +K+ 
Sbjct: 669 DGVAEVAKKILRQVAQPCVLGGTEVNVGASLGIALFPGDGEDPDTLMKRADAAMYRSKRE 728

Query: 251 GRNRVVCFSDIENNTC 266
           GRNR   FS   ++  
Sbjct: 729 GRNRYHFFSKAVDDAA 744


>gi|83310313|ref|YP_420577.1| signal transduction protein [Magnetospirillum magneticum AMB-1]
 gi|82945154|dbj|BAE50018.1| Predicted signal transduction protein [Magnetospirillum magneticum
           AMB-1]
          Length = 880

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 12/210 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  E L++ +I      +  Y +  S + E   +  RI  L+  D L+ L N   F   L
Sbjct: 401 IYPEWLTINVIRDDTGDITQYAAIFSDITERKKTEERIKNLAYFDVLTALPNRRLFTDRL 460

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                    + ++L+I+F D+D FK+IND+ GH VGD+V+   + ++         V RL
Sbjct: 461 QIAIANAHRHGQQLAIMFLDLDLFKRINDSLGHGVGDQVLVETAARISHCVREGDTVARL 520

Query: 176 GGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF          ++ A LA  +   ++  Q  +     +++T S GIA        +
Sbjct: 521 GGDEFTVLLPELDHLEDVAKLAERVIAHVK--QPFLVDDNELYVTTSIGIAVYPEDGTTV 578

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             +I  AD A+Y AK  GRN    ++   N
Sbjct: 579 EALIKNADTAMYRAKDLGRNSYQLYTAAMN 608


>gi|54296270|ref|YP_122639.1| hypothetical protein lpp0299 [Legionella pneumophila str. Paris]
 gi|53750055|emb|CAH11447.1| hypothetical protein lpp0299 [Legionella pneumophila str. Paris]
          Length = 609

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 95/222 (42%), Gaps = 20/222 (9%)

Query: 53  IGLTPFYGLEYILV-----ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107
           +     YGL Y+ V     EN  L+I +         ++   L  + +  N +   S  D
Sbjct: 393 MAQNDIYGLLYLEVGLEFDENQQLLITA------FAELTALALANVRLREN-LRYQSIRD 445

Query: 108 CLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+GL N                      +I+  D+D+FK+IND FGH  GD V+  L  
Sbjct: 446 PLTGLYNRRYLEDFLFKQLHQAERTKASFAILMLDLDHFKKINDTFGHDAGDLVLKELGQ 505

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            L           R GGEEF         Q A + A +LR  I N Q+   + P   IT 
Sbjct: 506 ILNSDIRLGDIAARYGGEEFVLLLYDIDAQAAKMKAENLRSAISNLQVKYGAQPVGQITA 565

Query: 221 SAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           S GI+         + +I  AD+ALY AK  GRN+V+ FS+I
Sbjct: 566 SIGISVYPDDAKSPAEVIEAADKALYQAKNKGRNKVILFSEI 607


>gi|257091944|ref|YP_003165585.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Candidatus Accumulibacter phosphatis clade IIA str.
            UW-1]
 gi|257044468|gb|ACV33656.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Candidatus Accumulibacter phosphatis clade IIA str.
            UW-1]
          Length = 1327

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 11/187 (5%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
            S + EL  +++++   +  D L+GL N       L    ++       L++ F D+D FK
Sbjct: 886  SDITELRRAHDQLDHQAHHDPLTGLPNRLLLGDRLHKALQRAHRDETGLAVFFIDLDRFK 945

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDL 199
             IND  GH VGD+V+  ++ +L  +      VGRLGG+EF        E  A   +A  +
Sbjct: 946  NINDTLGHQVGDRVLCEVAWRLGRLMRESDTVGRLGGDEFLIVIEDVGEPTAVSHIAEKI 1005

Query: 200  RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +++ S + +       +  S GI+          T++  AD A+Y AK+ GRN    F
Sbjct: 1006 LNVLQASPVTVE--HEFFVGASIGISVFPQDGADAETLMKNADVAMYRAKERGRNTYEFF 1063

Query: 259  SDIENNT 265
            +     T
Sbjct: 1064 TKDLTQT 1070


>gi|289549058|ref|YP_003474046.1| diguanylate cyclase [Thermocrinis albus DSM 14484]
 gi|289182675|gb|ADC89919.1| diguanylate cyclase [Thermocrinis albus DSM 14484]
          Length = 459

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 60/186 (32%), Positives = 90/186 (48%), Gaps = 9/186 (4%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           LG     +   L  +   +  ++  D L+GL N   F             YN  LS+V  
Sbjct: 274 LGQAIKEMALHLREAIEELHSMAYHDSLTGLPNRRFFFEHAQILLENAKRYNLPLSLVML 333

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK +ND +GH +GD V+  L++ L  +        RLGGEEF      +  + A  
Sbjct: 334 DVDNFKSLNDTYGHQLGDAVLINLANILKSMVRHSDVPARLGGEEFGILLPNTPLEGAVS 393

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           LA  +R   E S + + +G  ++ T+SAG+A      + +  +I RAD ALY AK  G+N
Sbjct: 394 LAQRIRIAFEGS-VVLHNGVEVYTTLSAGVATYTPDVKSLDELIRRADVALYRAKNMGKN 452

Query: 254 RVVCFS 259
           RV  F+
Sbjct: 453 RVEVFT 458


>gi|253559457|gb|ACT32418.1| putative diguanylate cyclase [Pseudomonas fluorescens]
          Length = 691

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 94/196 (47%), Gaps = 11/196 (5%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--- 123
           + +S  + S+   + L      +++E         Q + +D L+GL N +A+   L    
Sbjct: 497 QEVSARLKSLADRVALMEQDAQVVRENLEEQ---RQKALVDPLTGLPNRAAWSERLEHEV 553

Query: 124 ----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                +   L +   D+D+FK+INDN+GH  GD+V+  ++  L        F+ R GGEE
Sbjct: 554 VQWQRHGNSLLLAMLDLDHFKRINDNYGHLAGDRVLKLIASVLRKRLRGGDFIARFGGEE 613

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F      +     A LA  LR  IE    +   G  + +T+S G+      E   +++ R
Sbjct: 614 FILLVPDTPLAAGAKLAEALRLAIEACPFHFK-GEPVTVTVSIGLTAFKPGEHSDSVLKR 672

Query: 240 ADQALYVAKKSGRNRV 255
           ADQALY AK +GRNR+
Sbjct: 673 ADQALYRAKNAGRNRI 688


>gi|221065824|ref|ZP_03541929.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Comamonas testosteroni KF-1]
 gi|220710847|gb|EED66215.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Comamonas testosteroni KF-1]
          Length = 868

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 62/183 (33%), Positives = 98/183 (53%), Gaps = 10/183 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           E  +S  RI QL+  D L+GL N S         I+S  +++ +L+++F D+D FKQ+ND
Sbjct: 418 ERELSRARIRQLAFYDGLTGLPNRSLLQAKADQAIASAATHDAQLAVLFIDLDRFKQVND 477

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GHPVGD+++  ++ +L  V  +    GRL G+EF A       +  A     L++++ 
Sbjct: 478 SLGHPVGDELLRSVAARLQRVLRSSDIAGRLSGDEFVAVLPHCDAEYVANTIERLQELLA 537

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
              +NI+   S+ I+ S GIA        + T+++RAD A+Y AK  GR R   FS   N
Sbjct: 538 E-PLNIAD-TSLAISASIGIAMFPSDGRDMETLVHRADMAMYQAKSKGRGRFCFFSSEMN 595

Query: 264 NTC 266
              
Sbjct: 596 RLA 598


>gi|307609050|emb|CBW98481.1| hypothetical protein LPW_03181 [Legionella pneumophila 130b]
          Length = 709

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 95/222 (42%), Gaps = 20/222 (9%)

Query: 53  IGLTPFYGLEYILV-----ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107
           +     YGL Y+ V     EN  L+I +         ++   L  + +  N +   S  D
Sbjct: 493 MAQNDIYGLLYLEVGLKFDENQQLLITA------FAELTALALANVRLREN-LRYQSIRD 545

Query: 108 CLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+GL N                      +I+  D+D+FK+IND FGH  GD V+  L  
Sbjct: 546 PLTGLYNRRYLEDFLFKQLHQAERTKASFAILMLDLDHFKKINDTFGHDAGDLVLKELGQ 605

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            L           R GGEEF         Q A + A +LR  I N Q+   + P   IT 
Sbjct: 606 ILNSDIRLGDIAARYGGEEFVLLLYDIDAQAAKMKAENLRSAISNLQVKYGAQPVGQITA 665

Query: 221 SAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           S GI+         + +I  AD+ALY AK  GRN+V+ FS+I
Sbjct: 666 SIGISVYPDDAKSPAEVIEAADKALYQAKNKGRNKVILFSEI 707


>gi|304412077|ref|ZP_07393687.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella baltica OS183]
 gi|307305972|ref|ZP_07585718.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella baltica BA175]
 gi|304349627|gb|EFM14035.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella baltica OS183]
 gi|306911465|gb|EFN41891.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella baltica BA175]
          Length = 1215

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           Y   + L + ++      +  YI S + + E  +S  RI  L+  D L+ L N  +  S 
Sbjct: 748 YDFPKWLMMSVVRDDAGAVSHYIGSFTDISERKVSEERIHFLAHHDSLTLLPNRLSLQSR 807

Query: 122 LG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L        + + +++++F D+D+FK IND  GH VGD+++  ++ +L  + G    V R
Sbjct: 808 LEVVFREALASDSQIAVMFIDMDHFKNINDTLGHHVGDQLLLEVARRLKNIVGDTDTVAR 867

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           LGG+EF  A   ++  E A LA  LR  +  SQ  I +  ++H + S GI+      + +
Sbjct: 868 LGGDEFVVALSNTNHDEVASLAEALRSGL--SQTYIINNQALHSSPSIGISLFPTDGDSV 925

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             ++  AD A+Y AK +GRN    F+   N
Sbjct: 926 EALMKNADMAMYRAKSAGRNNYQFFTAAMN 955


>gi|23011596|ref|ZP_00051909.1| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 527

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 12/210 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  E L++ +I      L  Y +  S + E   +  RI  L+  D L+ L N   F   L
Sbjct: 202 IYPEWLTINVIRDESGELTQYAAIFSDITERKKTEERIKNLAYFDVLTALPNRRLFTDRL 261

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                    + ++L+I+F D+D FK+IND+ GH VGD+V+   + ++         V RL
Sbjct: 262 QIAIANAHRHGQQLAIMFLDLDLFKRINDSLGHGVGDQVLVETAARISHCVREGDTVARL 321

Query: 176 GGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF          ++AA LA  +   ++  Q  +     +++T S GIA      + +
Sbjct: 322 GGDEFTVLLPEIDHMEDAAKLAERVIAHVK--QPFVVDDNELYVTTSIGIAVYPEDGDSV 379

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             +I  AD A+Y AK  GRN    ++   N
Sbjct: 380 EALIKNADTAMYRAKDLGRNSFQLYTPAMN 409


>gi|78222177|ref|YP_383924.1| diguanylate cyclase/phosphodiesterase [Geobacter metallireducens
           GS-15]
 gi|78193432|gb|ABB31199.1| diguanylate cyclase/phosphodiesterase [Geobacter metallireducens
           GS-15]
          Length = 633

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 100/239 (41%), Gaps = 19/239 (7%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL-------GYISGSILKELFISY 97
           +A     +    PF  ++  L++  +    ++  +  L         +    + E   + 
Sbjct: 130 VAACIAAFRMDKPFDQVDEQLLQQYAHSASAVLRNFRLMEDLRRHAAMLEEEVAERSRAE 189

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            RI Q++  D L+GL N   F   L         +   L+++F D+D FK IND  GH V
Sbjct: 190 ERIRQMAYYDSLTGLPNRRLFNDRLRQSLALAQRHKRPLAVMFLDLDRFKLINDTLGHAV 249

Query: 151 GDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQI 208
           GD+++  ++ +L          V R GG+EF       S+ ++A  +A  +  +      
Sbjct: 250 GDRLLMAVAKRLRNCCRREGDTVARQGGDEFIINLSAISDVKDAFTVAQKIIDVFRT--P 307

Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            +  G  + IT S GI+   H       ++  AD A+Y AK+ GRN    F+   N   
Sbjct: 308 FVIDGYELFITTSIGISVYPHDGRSGDALVKNADVAMYRAKEQGRNNCQLFAPEMNARA 366


>gi|95930947|ref|ZP_01313676.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
 gi|95132956|gb|EAT14626.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
          Length = 648

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 100/184 (54%), Gaps = 8/184 (4%)

Query: 81  LLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIV 132
           L+G +   + +  + +   ++ +L+  D L+G +N          F      Y + LS++
Sbjct: 463 LVGMVGTVLDITTMVLLQQKLERLATTDELTGAVNRRQLFIYTDQFCQLAKRYKKALSVI 522

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F+D+D+FK +ND +GH  GD+V+  ++ ++  +      + R GGEEF      +    A
Sbjct: 523 FYDLDHFKAVNDTYGHAAGDEVLRQITTRIQSMLRDTDILARYGGEEFCILVPETDGDHA 582

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            + A  +R+ I  S +N+SSG S+ +T+S G+A     E  S++I RADQ +Y AK+ GR
Sbjct: 583 YLFAERIRQRISESSVNLSSGESLQVTVSMGVATYQEDEQGSSLIDRADQGVYEAKRRGR 642

Query: 253 NRVV 256
           N VV
Sbjct: 643 NCVV 646


>gi|117925126|ref|YP_865743.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Magnetococcus sp. MC-1]
 gi|117608882|gb|ABK44337.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Magnetococcus sp. MC-1]
          Length = 754

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 91/185 (49%), Gaps = 11/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + E   +  ++ +L+  D L+ L N   F   L         + +++++ F D+D FK
Sbjct: 296 SDISESKATELKLERLAYYDALTQLPNRMLFHDRLEHEFYNAQRHRKQVAVFFIDLDRFK 355

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND  GH  GD+++  ++ +L         V R+GG+EF       S+ E+  +A   R
Sbjct: 356 QVNDTLGHSAGDELLQHVAQRLEGCVRAADTVARMGGDEFTVILADISDNES--VARVAR 413

Query: 201 KIIENSQINIS-SGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCF 258
           K++E  Q +IS  G  I +  S GIA        + T+   AD A+Y AK+SGR     F
Sbjct: 414 KVLEELQKSISIKGHDIFVGASIGIALYPDNGNDVETLTKNADMAMYRAKESGRGNYKFF 473

Query: 259 SDIEN 263
           S+  N
Sbjct: 474 SEEMN 478


>gi|291613922|ref|YP_003524079.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Sideroxydans lithotrophicus ES-1]
 gi|291584034|gb|ADE11692.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Sideroxydans lithotrophicus ES-1]
          Length = 1149

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 98/213 (46%), Gaps = 13/213 (6%)

Query: 60  GLEYILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           G EYI  E++ +  +S     ++ Y++    + E  ++  RI +L   D L+GL N +  
Sbjct: 680 GTEYI--ESVLISPVSQVDGRVMNYLAIKEDITEKRLTEERIEKLEHFDHLTGLPNRTQL 737

Query: 119 ISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                          E+++++F D+D+FK IND  GH +GD+++  ++ +L         
Sbjct: 738 NERFKYALSLAQRSGEQMTVMFLDLDHFKDINDTLGHSIGDQLLMDVAKRLKETLRDEDT 797

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK- 230
           V R GG+EF     G+ E  AA +A  L + +  SQ        +  T S GIA   H  
Sbjct: 798 VSRQGGDEFILILPGTDENGAAHVAAKLMEAV--SQAFQFEQHELVATCSIGIAIYPHDG 855

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           E   T+   AD A+Y  K  GRN    F+    
Sbjct: 856 ENFETLSKNADTAMYRVKHDGRNGFCFFTSEMQ 888


>gi|217975287|ref|YP_002360038.1| PAS/PAC and Chase sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS223]
 gi|217500422|gb|ACK48615.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella baltica OS223]
          Length = 1215

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           Y   + L + ++      +  YI S + + E  +S  RI  L+  D L+ L N  +  S 
Sbjct: 748 YDFPKWLMMSVVRDDAGAVSHYIGSFTDISERKVSEERIHFLAHHDSLTLLPNRLSLQSR 807

Query: 122 LG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L        + + +++++F D+D+FK IND  GH VGD+++  ++ +L  + G    V R
Sbjct: 808 LEVVFREALASDSQIAVMFIDMDHFKNINDTLGHHVGDQLLLEVARRLKNIVGDTDTVAR 867

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           LGG+EF  A   ++  E A LA  LR  +  SQ  I +  ++H + S GI+      + +
Sbjct: 868 LGGDEFVVALSDTNHDEVASLAEALRSGL--SQTYIINNQALHSSPSIGISLFPTDGDSV 925

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             ++  AD A+Y AK +GRN    F+   N
Sbjct: 926 EALMKNADMAMYRAKSAGRNNYQFFTAAMN 955


>gi|54293235|ref|YP_125650.1| hypothetical protein lpl0283 [Legionella pneumophila str. Lens]
 gi|53753067|emb|CAH14514.1| hypothetical protein lpl0283 [Legionella pneumophila str. Lens]
          Length = 709

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 94/222 (42%), Gaps = 20/222 (9%)

Query: 53  IGLTPFYGLEYILV-----ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107
           +     YGL Y+ V     EN  L+I           ++   L  + +  N +   S  D
Sbjct: 493 MAQNDIYGLLYLEVGLKFDENQQLLITE------FAELTALALANVRLREN-LRYQSIRD 545

Query: 108 CLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+GL N                      +I+  D+D+FK+IND FGH  GD V+  L  
Sbjct: 546 PLTGLYNRRYLEDFLFKQLHQAERTKASFAILMLDLDHFKKINDTFGHDAGDLVLKELGQ 605

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            L           R GGEEF         Q A + A +LR  I N Q+   + P   IT 
Sbjct: 606 ILNSDIRLGDIAARYGGEEFVLLLYDIDAQAAKMKAENLRSAISNLQVKYGAQPVGQITA 665

Query: 221 SAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           S GI+         + +I  AD+ALY AK  GRN+V+ FS+I
Sbjct: 666 SIGISVYPDDAKSPAEVIEAADKALYQAKNKGRNKVILFSEI 707


>gi|209527055|ref|ZP_03275570.1| response regulator receiver modulated diguanylate cyclase
           [Arthrospira maxima CS-328]
 gi|209492483|gb|EDZ92823.1| response regulator receiver modulated diguanylate cyclase
           [Arthrospira maxima CS-328]
          Length = 322

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 91/176 (51%), Gaps = 9/176 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +   + +L+  D L+G+ N    +            YN   S++  DID+FK IND
Sbjct: 142 ELKQALVELEKLATTDPLTGIANRRHLLTLAEREFQRTHRYNNPFSVLMIDIDHFKLIND 201

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH +GD+ +  ++D  V         GR GGEEF      +   EA ++A  +R+ I 
Sbjct: 202 NYGHNIGDEALKIMADVTVNALRKVDIFGRFGGEEFVVFLPETQADEALLVAERIREAIA 261

Query: 205 NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            + I +    +IHIT+S G+      E  +  ++  AD+ALY AKK GRN+VV ++
Sbjct: 262 TTPIYVDD-QTIHITVSIGVTIYESSEMSLDGLLMEADKALYDAKKQGRNQVVIYT 316


>gi|120555518|ref|YP_959869.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120325367|gb|ABM19682.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 316

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/217 (32%), Positives = 110/217 (50%), Gaps = 17/217 (7%)

Query: 57  PFYGLEYILVENLSLVIISI------TISLLLGYIS--GSILKELFISYNRISQLSRIDC 108
           P  G E  + +NL++  I+        + LL+  ++   S  + L  +  ++++LS  D 
Sbjct: 100 PITGTEEYMFQNLTISPITAPNGEVEKVCLLVYDVTEFASSKRALERANEQLAKLSMTDR 159

Query: 109 LSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GLLN   +             Y +  S+V FDID+FK +ND +GH  GD+VI   +D 
Sbjct: 160 LTGLLNRGTWENLVDAEYERFRRYGQATSLVMFDIDHFKPVNDTYGHLAGDEVIRHTADV 219

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                      GR GGEEF      +  + A ++   +R+ IE S ++ S+G  I  T+S
Sbjct: 220 TRNNIRQSDSAGRYGGEEFGIILPETDAESARVICERIREAIEKSTVSTSAG-DIQYTVS 278

Query: 222 AGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
            GIA+     E     + +AD+ALY AK+SGRN+VV 
Sbjct: 279 MGIAQLTETPENYMQWMQKADEALYKAKESGRNKVVV 315


>gi|207728363|ref|YP_002256757.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
 gi|206591609|emb|CAQ57221.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
          Length = 636

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 11/190 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
            +S   + ++  +  RI  L+  D L+GLLN  A    L            ++S++F D+
Sbjct: 176 LVSLVDITQIREAQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRNGTRVSVMFLDL 235

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK IND  GH  GD+++  ++ +L         V RLGG+EF              +A
Sbjct: 236 DRFKNINDTLGHQFGDQLLREVAARLQACAREADTVARLGGDEFVVMLESLDGMGTRRVA 295

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             +   I         G  + + +S GIA   H  +  +T++ +AD A+Y+AK+ GRN  
Sbjct: 296 ERILAAI--GAPFHIEGQELFVGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNF 353

Query: 256 VCF-SDIENN 264
             F SD+++ 
Sbjct: 354 QTFTSDLDDR 363


>gi|296134290|ref|YP_003641537.1| diguanylate cyclase [Thermincola sp. JR]
 gi|296032868|gb|ADG83636.1| diguanylate cyclase [Thermincola potens JR]
          Length = 379

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 134/296 (45%), Gaps = 46/296 (15%)

Query: 8   FLSIWLCHEKNLES-FSPHTFM--IYFSIFFSIFIATVI--FIANIFLFYIGLTPFYGLE 62
           F ++W+ +     S F P+ ++  I  +  +  FI + +  F A +   +       GL 
Sbjct: 77  FATLWIDYTGGTSSIFYPNFYLLPIIAATMYCGFIDSFLTAFFAGLLSLWFQYNEL-GLN 135

Query: 63  YILVENLSL---VIISITISLLLGYI----------SGSILKELFISYNRI--------- 100
             ++   S+   +I    +S +LGY+          +  I  EL  +Y+++         
Sbjct: 136 LAIIGETSILVNIIFFFLLSSILGYLIKIGREQQASTMKITSELETAYHQLSASHEQLQS 195

Query: 101 ------------SQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQIN 143
                        QL+  D L+GL N+  F  +L    +K     +S+   DID FK  N
Sbjct: 196 YTEIIEKMNKEMEQLAITDELTGLYNYRYFQIALDKELKKNKFSVVSLFMLDIDNFKLFN 255

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH +G++++A ++  +           R GGEEFA    G    E A LA  +RKI+
Sbjct: 256 DRHGHLMGNRMLAEIARVIKENVRGVDTAVRYGGEEFAVIFPGMDSNEVAQLAERIRKIV 315

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           EN+ I   +G  + +T+S G+A      +  S +I  AD ALY AK++GRN+V  F
Sbjct: 316 ENTYIKTGAGEPVSVTVSIGVASYPRDAQTKSELISHADLALYDAKQAGRNQVCIF 371


>gi|207739719|ref|YP_002258112.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
 gi|206593101|emb|CAQ60007.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
          Length = 636

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 11/190 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
            +S   + ++  +  RI  L+  D L+GLLN  A    L            ++S++F D+
Sbjct: 176 LVSLVDITQIREAQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRNGTRVSVMFLDL 235

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK IND  GH  GD+++  ++ +L         V RLGG+EF              +A
Sbjct: 236 DRFKNINDTLGHQFGDQLLREVAARLQACAREADTVARLGGDEFVVMLESLDGMGTRRVA 295

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             +   I         G  + + +S GIA   H  +  +T++ +AD A+Y+AK+ GRN  
Sbjct: 296 ERILAAI--GAPFHIEGQELFVGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNF 353

Query: 256 VCF-SDIENN 264
             F SD+++ 
Sbjct: 354 QTFTSDLDDR 363


>gi|120555164|ref|YP_959515.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Marinobacter aquaeolei VT8]
 gi|120325013|gb|ABM19328.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Marinobacter aquaeolei VT8]
          Length = 908

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 13/189 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           +S   L +L  + + + +L+  D L+GL N   F   L           E  +++F D+D
Sbjct: 457 LSLRDLTQLKAAQSELHRLAFYDPLTGLANRQLFRDRLNHVVRRSRRSGEAAALMFLDLD 516

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILA 196
            FK+IND  GH  GD+++  ++  L         V RLGG+EF       S  EAA  +A
Sbjct: 517 GFKRINDTLGHDAGDELLRQVAQWLEGCVREEDSVARLGGDEFVVLLSRISGSEAAGKVA 576

Query: 197 NDL-RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
            ++ R++ +  ++N      + +T+S GI    H  E    ++  AD A+Y AK+ GRN 
Sbjct: 577 ENILRRLCQRIRLN---DHEVGVTVSIGITMIPHDSEDAGALMKYADLAMYRAKELGRNT 633

Query: 255 VVCFSDIEN 263
              F+   N
Sbjct: 634 YQFFTPAMN 642


>gi|327482326|gb|AEA85636.1| GGDEF domain-containing protein [Pseudomonas stutzeri DSM 4166]
          Length = 485

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 65/199 (32%), Positives = 112/199 (56%), Gaps = 10/199 (5%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS----- 120
           V +L+L ++++ I LL      SI + L +++ +++QL+  D L+G+ +  AF++     
Sbjct: 288 VISLALSVVALLIFLLSSRYFQSIAR-LRLAHGQLAQLANTDVLTGVSSRRAFLAGLEAE 346

Query: 121 --SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                 +NE LS++  DID+FK++ND  GHP+GD V+   S+    +       GRLGGE
Sbjct: 347 LARARRHNESLSLLMLDIDHFKRVNDVHGHPIGDAVLKQFSETCAGMLRAHDLFGRLGGE 406

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTII 237
           EFA     +  + A  +A  +R  +  + +  ++G  I +T+S G+A+       +  ++
Sbjct: 407 EFAIVLPHTDAEGARCVAEKIRTAVAQTPMPTAAG-DITVTVSIGLAQMEGLPGEVDQLM 465

Query: 238 YRADQALYVAKKSGRNRVV 256
            RADQALY AK+ GRN+V 
Sbjct: 466 ARADQALYEAKRGGRNQVR 484


>gi|163943036|ref|YP_001647920.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus weihenstephanensis KBAB4]
 gi|163865233|gb|ABY46292.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus weihenstephanensis KBAB4]
          Length = 892

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 51/210 (24%), Positives = 97/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++ + I I   ++  +     +  L+    ++  ++  D L+GL N   F   L
Sbjct: 423 YYYHLHITFIPIFINKEVVGMFGIARDITTLYEKQKQVEHMAFHDALTGLPNRRKFEKDL 482

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +    ++++F D+D FK+IND  GH  GD ++  ++ +L     +   V R 
Sbjct: 483 KTILNTAQNTTNDVAVMFLDLDRFKKINDRLGHDFGDLLLIEVAKRLRGCLRSKDIVARQ 542

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A+ +A  +  I+  ++        + +T S GIA        +
Sbjct: 543 GGDEFTILLPDMYSEKSASFMAEQILTIL--NKPYFIKDEELSVTPSIGIAMYPDYGTDV 600

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR + FS   +
Sbjct: 601 TELMKNADMAMYRAKANGKNRFIFFSKEMS 630


>gi|299533301|ref|ZP_07046685.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni S44]
 gi|298718831|gb|EFI59804.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni S44]
          Length = 860

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 61/183 (33%), Positives = 95/183 (51%), Gaps = 10/183 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           E  +S  RI QL+  D L+GL N S   +            +E+L+++F D+D FKQ+ND
Sbjct: 410 ERELSRARIRQLAFYDGLTGLPNRSLLQAKADQAIASAAGNDEQLAVLFIDLDRFKQVND 469

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GHPVGD+++  ++ +L  V  +    GRL G+EF A       +  A     L++++ 
Sbjct: 470 SLGHPVGDELLRNVATRLQRVLRSSDIAGRLSGDEFVAVLPQCDAEHVANTIERLQELLA 529

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
              +NI+   S+ I+ S GIA        + T+++RAD A+Y AK  GR R   FS   N
Sbjct: 530 E-PLNIAD-TSLSISASVGIAMFPMDGRDMETLVHRADMAMYQAKSKGRGRFCFFSSEMN 587

Query: 264 NTC 266
              
Sbjct: 588 RLA 590


>gi|160877450|ref|YP_001556766.1| PAS/PAC and Chase sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|160862972|gb|ABX51506.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella baltica OS195]
 gi|315269652|gb|ADT96505.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella baltica OS678]
          Length = 1215

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 106/210 (50%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           Y   + L + ++      +  YI S + + E  +S  RI  L+  D L+ L N  +  S 
Sbjct: 748 YDFPKWLMMSVVRDDAGAVSHYIGSFTDISERKVSEERIHFLAHHDSLTLLPNRLSLQSR 807

Query: 122 LG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L        + + +++++F D+D+FK IND  GH VGD+++  ++ +L  + G    V R
Sbjct: 808 LEVVFREALASDSQIAVMFIDMDHFKNINDTLGHHVGDQLLLEVARRLKNIVGDTDTVAR 867

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           LGG+EF  A   ++  E A LA  LR  +  SQ  + +  ++H + S GI+      + +
Sbjct: 868 LGGDEFVVALSDTNHDEVASLAEALRSGL--SQTYVINNQALHSSPSIGISLFPTDGDSV 925

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             ++  AD A+Y AK +GRN    F+   N
Sbjct: 926 EALMKNADMAMYRAKSAGRNNYQFFTAAMN 955


>gi|297569923|ref|YP_003691267.1| response regulator receiver modulated diguanylate cyclase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925838|gb|ADH86648.1| response regulator receiver modulated diguanylate cyclase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 467

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 61/191 (31%), Positives = 95/191 (49%), Gaps = 9/191 (4%)

Query: 76  ITISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYN 126
           + I   +  ++  +  E  L  S  R  +LS ID L+GL N   F       +     Y 
Sbjct: 276 VGIVKHISDVTSRVRAEKALQESEQRYKELSIIDELTGLYNKRYFNKNLIPEVERARRYG 335

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             LS++  D+D FK  ND +GHP GD+V+A + + L           R+GGEEFA     
Sbjct: 336 NVLSLLMMDVDNFKHFNDTYGHPQGDRVLAAMGELLRNTVRLNDLACRIGGEEFAVILPE 395

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
           ++ + A  LA  LR+     + + + G ++  T+S G+AE    E   +++ RAD  LY 
Sbjct: 396 TTGENALGLAERLRRKFAELEFHPTEGVAVQKTMSIGVAEFETDETPESLLARADSNLYA 455

Query: 247 AKKSGRNRVVC 257
           AK++GRNR + 
Sbjct: 456 AKEAGRNRCIL 466


>gi|253998573|ref|YP_003050636.1| diguanylate cyclase [Methylovorus sp. SIP3-4]
 gi|253985252|gb|ACT50109.1| diguanylate cyclase [Methylovorus sp. SIP3-4]
          Length = 487

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 63/194 (32%), Positives = 101/194 (52%), Gaps = 9/194 (4%)

Query: 72  VIISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLG 123
           + I++ I LLL  ++  +    L     +I  ++  D L+ L N  AF       +    
Sbjct: 289 LYINLGICLLLTALAVYLTNLALKRYQTQIETMATTDSLTHLPNRKAFEIIIDVIMQERI 348

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            Y + L+++  DID+FKQIND  GH  GD+V+  ++  +     +  FV R GGEEF   
Sbjct: 349 RYGKDLAVILLDIDHFKQINDRHGHFAGDQVLTEVALIIRSCLRSVDFVCRWGGEEFLIL 408

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
               +E+ A +LA  +R+ +E   +   + P IH+T S G+A   + E I  ++ RAD A
Sbjct: 409 LKDCNERNARLLAEKIRETLETRPVAHKNVP-IHLTASLGVAMVQNGERIEQVLERADYA 467

Query: 244 LYVAKKSGRNRVVC 257
           +Y AK  GRN+V+ 
Sbjct: 468 MYQAKALGRNQVIF 481


>gi|242280482|ref|YP_002992611.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens
           DSM 2638]
 gi|242123376|gb|ACS81072.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens
           DSM 2638]
          Length = 779

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 60/180 (33%), Positives = 96/180 (53%), Gaps = 9/180 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           +   + E   + +++ +L+  D L+GL N   F+ S          Y   LS++  DIDY
Sbjct: 591 TFRDVTERKEAEDKLRKLATTDSLTGLSNRRFFMESAEDALERTRRYGRDLSLLMMDIDY 650

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND +GH  GD V+  LS   + +       GR+GGEEF+     +    A ++A  
Sbjct: 651 FKTVNDMYGHDAGDDVLKGLSKTGLKILRNIDVFGRIGGEEFSILLPDTGLDGATLVAER 710

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           LR  IE +++N  SG S++IT+S G+A    H + +  ++  AD  LY AK++GRN+V  
Sbjct: 711 LRAEIETTKMNTRSG-SLNITVSIGVATYSEHTKTLEQLLKAADIGLYAAKEAGRNQVKV 769


>gi|52840485|ref|YP_094284.1| sensor histidine kinase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52627596|gb|AAU26337.1| sensor histidine kinase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 709

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 96/222 (43%), Gaps = 20/222 (9%)

Query: 53  IGLTPFYGLEYILV-----ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107
           +     YGL Y+ V     EN  L+I +         ++   L  + +  N +   S  D
Sbjct: 493 MAQNDIYGLLYLEVGLKFDENQQLLITA------FAELTALALANVRLREN-LRYQSIRD 545

Query: 108 CLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+GL N                      +I+  D+D+FK+IND FGH  GD V+  L  
Sbjct: 546 PLTGLYNRRYLEDFLFKQLHQAERTKASFAILMLDLDHFKKINDTFGHDAGDLVLKELGQ 605

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            L           R GGEEF       + Q A + A +LR  I N Q+   + P   IT 
Sbjct: 606 ILNNDIRLGDIAARYGGEEFVLLLYDINAQAAKMKAENLRSAISNLQVKYGAQPVGQITA 665

Query: 221 SAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           S GI+         + +I  AD+ALY AK  GRN+V+ FS+I
Sbjct: 666 SIGISVYPDDAKSPAEVIEAADKALYQAKNKGRNKVILFSEI 707


>gi|192360753|ref|YP_001982450.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107]
 gi|190686918|gb|ACE84596.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107]
          Length = 595

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 82/182 (45%), Gaps = 11/182 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
           G  + E   S  +I  L+  D L+ L N   F       I S   +  +L+++F D+D F
Sbjct: 137 GRDITERKQSEEQIQYLATHDSLTALPNRFMFSKLLAVAIESARRHQRQLAVLFIDLDRF 196

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K IND  GH  GD+++  ++++      T   VGRLGG+EF        S  +AA +A  
Sbjct: 197 KNINDTLGHDAGDQLLITMANRFRTCLRTSDIVGRLGGDEFVILLPELESHDQAARVAQK 256

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           +       Q     G    +T S GI       E    ++  AD A+Y AK+ G+N    
Sbjct: 257 ILSA--AIQPLDVHGQECRVTASIGICLYPEDAEDEQALMKNADIAMYRAKEEGKNNYQF 314

Query: 258 FS 259
           +S
Sbjct: 315 YS 316


>gi|187926918|ref|YP_001893263.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12J]
 gi|241665247|ref|YP_002983606.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12D]
 gi|187728672|gb|ACD29836.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12J]
 gi|240867274|gb|ACS64934.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12D]
          Length = 652

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 11/190 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
            +S   + ++  +  RI  L+  D L+GLLN SA    L            ++S++F D+
Sbjct: 196 LVSLVDITQIREAQQRIRHLATHDTLTGLLNRSALEDRLEHALALGRRNRSRVSVMFLDL 255

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK +ND  GH  GD ++  ++ +L         V RLGG+EF              +A
Sbjct: 256 DRFKNVNDTLGHQFGDMLLREVAARLQACAREADTVARLGGDEFVVMLESLDAMGTRRVA 315

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             +   I         G  +++ +S GIA      +   T++ +AD A+Y+AK+ GRN  
Sbjct: 316 ERILSAI--GAPFHIEGQELYLGVSIGIAVAPRDGDDPHTLLRKADAAMYLAKERGRNNF 373

Query: 256 VCF-SDIENN 264
             F SD+++ 
Sbjct: 374 QTFTSDLDDR 383


>gi|327480824|gb|AEA84134.1| sensory box/GGDEF family protein [Pseudomonas stutzeri DSM 4166]
          Length = 320

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 107/225 (47%), Gaps = 17/225 (7%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVII------SITISLLLGYISGSIL--KELFISYNRI 100
            L +    P  GLE  + +N +L+ +         + L++  ++   +  ++L  +   +
Sbjct: 94  LLRFKNYQPITGLEDFMYQNTTLLPLKGINGSIDQVCLIIYDVTDVAINRRQLQAANAEL 153

Query: 101 SQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +LS  D L+GL N   +   L         Y+ + ++V FDID+FK IND +GH VGD 
Sbjct: 154 QRLSSTDRLTGLYNRGHWEEMLRLDYARHRRYDSQAALVMFDIDHFKSINDTYGHQVGDA 213

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           VI  +++ +          GR GGEEF      + +Q A   A  LR  +E+ ++     
Sbjct: 214 VIQQVAELIRENLRDSDVAGRYGGEEFVVLLPDTDKQGALTFAERLRHAVESHEVQHEQ- 272

Query: 214 PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             I  TIS G+A+        + +I  AD ALY +K +GRNRV  
Sbjct: 273 HRIRFTISLGVADLSVPSSSHAQLIEWADSALYASKAAGRNRVTL 317


>gi|163783656|ref|ZP_02178644.1| hypothetical protein HG1285_12732 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881061|gb|EDP74577.1| hypothetical protein HG1285_12732 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 336

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 10/186 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFF 134
           L +I   I+KE  +   R+ + + ID L+GL N                 Y   +S++ F
Sbjct: 150 LAFIFSFIVKE-ELEKKRLLEKAIIDHLTGLYNRFYLEEAGAREIARAKRYGFPISLIMF 208

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FKQ+ND +GH VGD+V+   +  +     +     R GGEEF      +  +EA  
Sbjct: 209 DLDNFKQVNDTYGHQVGDRVLVKFASIVSSNVRSTDMPVRYGGEEFVVLLPHTYPEEAVK 268

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253
           +A  +R+  E        G  + +T+SAGI+     E  +  +I  AD+A+Y AK+ G+N
Sbjct: 269 VAERIREEFEKFLFRF-EGEVMRLTVSAGISFCNSGECSLGELIQMADKAMYEAKEKGKN 327

Query: 254 RVVCFS 259
           R+  FS
Sbjct: 328 RIEVFS 333


>gi|309779464|ref|ZP_07674225.1| sensory box/GGDEF family protein [Ralstonia sp. 5_7_47FAA]
 gi|308921705|gb|EFP67341.1| sensory box/GGDEF family protein [Ralstonia sp. 5_7_47FAA]
          Length = 624

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 11/190 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
            +S   + ++  +  RI  L+  D L+GLLN SA    L            ++S++F D+
Sbjct: 168 LVSLVDITQIREAQQRIRHLATHDTLTGLLNRSALEDRLEHALALARRNQSRVSVMFLDL 227

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK +ND  GH  GD ++  ++ +L         V RLGG+EF              +A
Sbjct: 228 DRFKNVNDTLGHQFGDMLLREVAARLQACAREADTVARLGGDEFVVMLEALDGLGTRRVA 287

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             +   I  S      G  +++ +S GIA   H  +  +T++ +AD A+Y+AK+ GRN  
Sbjct: 288 ERILSAI--SAPFHIEGQELYLGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNF 345

Query: 256 VCF-SDIENN 264
             F SD+++ 
Sbjct: 346 QTFTSDLDDR 355


>gi|264679607|ref|YP_003279514.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni
           CNB-2]
 gi|262210120|gb|ACY34218.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni
           CNB-2]
          Length = 868

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 61/183 (33%), Positives = 95/183 (51%), Gaps = 10/183 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           E  +S  RI QL+  D L+GL N S   +            +E+L+++F D+D FKQ+ND
Sbjct: 418 ERELSRARIRQLAFYDGLTGLPNRSLLQAKADQAIASAAGNDEQLAVLFIDLDRFKQVND 477

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GHPVGD+++  ++ +L  V  +    GRL G+EF A       +  A     L++++ 
Sbjct: 478 SLGHPVGDELLRNVATRLQRVLRSSDIAGRLSGDEFVAVLPQCDAEHVANTIERLQELLA 537

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
              +NI+   S+ I+ S GIA        + T+++RAD A+Y AK  GR R   FS   N
Sbjct: 538 E-PLNIAD-TSLSISASVGIAMFPMDGRDMETLVHRADMAMYQAKSKGRGRFCFFSSEMN 595

Query: 264 NTC 266
              
Sbjct: 596 RLA 598


>gi|270158442|ref|ZP_06187099.1| sensor histidine kinase [Legionella longbeachae D-4968]
 gi|269990467|gb|EEZ96721.1| sensor histidine kinase [Legionella longbeachae D-4968]
          Length = 721

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 24/229 (10%)

Query: 53  IGLTPFYGLEYILV---------ENLSLVIISITISLLLGYISGSILKELFISYNRISQL 103
           +     YGL Y+ V         +N  L+I + +    L + +  +          +   
Sbjct: 483 MAQNDIYGLLYMEVSEEPAGAFSQNQQLLITAFSELTALAFANVRL-------RENLRYQ 535

Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S  D L+GL N       L             +S++  D+D+FK+IND +GH  GD  + 
Sbjct: 536 SMRDPLTGLYNRRYLEDFLLKQIHQSERTKSPISLLMLDLDHFKKINDTYGHDAGDVALK 595

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            L   L           R GGEEF  A   + E+     A  +R+ +   Q+   + P  
Sbjct: 596 ELGKILQEDIRVGDIAARYGGEEFIVAFYNTDEKTIKTRAESIREAVSRLQVKYGAQPVG 655

Query: 217 HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            IT+S G+A         + +I  AD+ALY AK +G+NR+V +S+I+N 
Sbjct: 656 PITVSIGVAVYPTDGRNTNELIESADKALYFAKTNGKNRIVLYSEIDNR 704


>gi|302344379|ref|YP_003808908.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfarculus baarsii DSM 2075]
 gi|301640992|gb|ADK86314.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfarculus baarsii DSM 2075]
          Length = 972

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 12/207 (5%)

Query: 67  ENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--- 122
           E L++ +I  +   ++ Y++    + E+  S  +I   +  D L+GL N + F   L   
Sbjct: 509 EWLTVTVIRDSHGRVINYLAIFYDITEIKRSQEQIRYQAYHDALTGLPNRNLFKDRLGQA 568

Query: 123 ----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                    K++++F D+D FK IND+ GH VGD V+  ++ +L         V R+GG+
Sbjct: 569 LHHAERRGSKVAVLFVDLDNFKLINDSLGHDVGDHVLRDIAGRLRRCVRDEDTVARIGGD 628

Query: 179 EFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTI 236
           EF         +  A  +A  +       +     G   H+  S G+       + + T+
Sbjct: 629 EFLMVLEEIDGELGADRVARRVLDNFA--RPFGVGGHEFHLGASIGVTVFPDDGQDVETL 686

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIEN 263
           I  AD A+Y AK+ G+N    F+    
Sbjct: 687 IKNADMAMYRAKERGKNNYQMFTPAMQ 713


>gi|242278391|ref|YP_002990520.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfovibrio
           salexigens DSM 2638]
 gi|242121285|gb|ACS78981.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfovibrio
           salexigens DSM 2638]
          Length = 635

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 62/181 (34%), Positives = 91/181 (50%), Gaps = 8/181 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDID 137
           I+   + E       + +L+  D L+G  N   F+         L  Y  +L ++  DID
Sbjct: 451 ITAHDITEQKEMLEEVKRLASTDYLTGAHNRRHFMSRAETELDRLTRYGGELYLMMLDID 510

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK IND +GH VGD V+  +    +    T    GRLGGEEFAA  +  S   A  +A 
Sbjct: 511 HFKNINDTYGHSVGDVVLKEMVKCCIETLRTSDVFGRLGGEEFAALLVHGSIDSAIQVAE 570

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            LR+ IE+ ++ I     + +T+S G+   C  E I   +  AD+ LY AK+ GRNRVV 
Sbjct: 571 RLREAIEDMEVRI-GRHVVKLTVSIGLTMVCADEDIEIALKHADKCLYQAKEQGRNRVVS 629

Query: 258 F 258
           +
Sbjct: 630 Y 630


>gi|153002714|ref|YP_001368395.1| PAS/PAC and Chase sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|151367332|gb|ABS10332.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella baltica OS185]
          Length = 1215

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           Y   + L + ++      +  YI S + + E  +S  RI  L+  D L+ L N  +  S 
Sbjct: 748 YDFPKWLMMSVVRDDAGAVSHYIGSFTDISERKVSEERIHFLAHHDSLTLLPNRLSLQSR 807

Query: 122 LG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L        + + +++++F D+D+FK IND  GH VGD+++  ++ +L  + G    V R
Sbjct: 808 LEVVFREALASDSQIAVMFIDMDHFKNINDTLGHHVGDQLLLEVARRLKNIVGDTDTVAR 867

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           LGG+EF  A   ++  E A LA  LR  +  SQ  I +  ++H + S GI+      + +
Sbjct: 868 LGGDEFVVALSDTNHDEVASLAEALRSGL--SQTYIINNQALHSSPSIGISLFPTDGDSV 925

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             ++  AD A+Y AK +GRN    F+   N
Sbjct: 926 EALMKNADMAMYRAKSAGRNNYQFFTAAMN 955


>gi|118581094|ref|YP_902344.1| PAS/PAC sensor-containing diguanylate cyclase [Pelobacter
           propionicus DSM 2379]
 gi|118503804|gb|ABL00287.1| diguanylate cyclase with PAS/PAC sensor [Pelobacter propionicus DSM
           2379]
          Length = 505

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 88/183 (48%), Gaps = 11/183 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           +  + + E       + + S  D L+ L N       L         +   L+++  DID
Sbjct: 314 VEFADITERTRMQEELREASERDPLTSLYNRRKLYQLLTVELTRTRRHGHPLTLMLLDID 373

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK+IND FGH  GD V+  +++ +  +  +   + R GGEEF  A   +    AA+LA 
Sbjct: 374 HFKRINDTFGHDSGDLVLTQVAELISAILRSTDILARYGGEEFVIACPETDMDGAAVLAE 433

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +R  I              +TIS GI+    K+ I+ +I RAD ALY AK+ GRNRVV 
Sbjct: 434 KIRSSIAMFSFPTVGA----VTISVGISLLESKDDINALIKRADTALYAAKEMGRNRVVR 489

Query: 258 FSD 260
            ++
Sbjct: 490 STE 492


>gi|289166719|ref|YP_003456857.1| regulatory protein (GGDEF domain) [Legionella longbeachae NSW150]
 gi|288859892|emb|CBJ13878.1| putative regulatory protein (GGDEF domain) [Legionella longbeachae
           NSW150]
          Length = 735

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 24/229 (10%)

Query: 53  IGLTPFYGLEYILV---------ENLSLVIISITISLLLGYISGSILKELFISYNRISQL 103
           +     YGL Y+ V         +N  L+I + +    L + +  +          +   
Sbjct: 497 MAQNDIYGLLYMEVSEEPAGAFSQNQQLLITAFSELTALAFANVRL-------RENLRYQ 549

Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S  D L+GL N       L             +S++  D+D+FK+IND +GH  GD  + 
Sbjct: 550 SMRDPLTGLYNRRYLEDFLLKQIHQSERTKSPISLLMLDLDHFKKINDTYGHDAGDVALK 609

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            L   L           R GGEEF  A   + E+     A  +R+ +   Q+   + P  
Sbjct: 610 ELGKILQEDIRVGDIAARYGGEEFIVAFYNTDEKTIKTRAESIREAVSRLQVKYGAQPVG 669

Query: 217 HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            IT+S G+A         + +I  AD+ALY AK +G+NR+V +S+I+N 
Sbjct: 670 PITVSIGVAVYPTDGRNTNELIESADKALYFAKTNGKNRIVLYSEIDNR 718


>gi|253997289|ref|YP_003049353.1| PAS/PAC/GAF sensor-containing diguanylate cyclase [Methylotenera
           mobilis JLW8]
 gi|253983968|gb|ACT48826.1| diguanylate cyclase with PAS/PAC and GAF sensors [Methylotenera
           mobilis JLW8]
          Length = 591

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 8/180 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           + + + E       + + +RID L+G+ N   F+            Y+  LS    DID 
Sbjct: 409 TSTDITERKQLEEELKRQARIDFLTGVSNRRYFMEQAEQEIQRTSRYDTPLSFFMLDIDL 468

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND +GH  GD V+  ++            +GR+GGEEFA     + + +AA +A  
Sbjct: 469 FKQVNDTYGHKSGDIVLKRMASVCRETLREIDIIGRVGGEEFAILLPETDKAQAAEVAER 528

Query: 199 LRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           LR ++ + ++   +G  I  T+S G+A R   ++ I  ++  AD+ALY AKK GRNRV  
Sbjct: 529 LRSVLADEKVPTEAGAPIQFTVSIGVASRVSSQDNIDMLLNLADEALYQAKKYGRNRVYI 588


>gi|254457638|ref|ZP_05071066.1| GGDEF domain/pas/pac sensor domain protein [Campylobacterales
           bacterium GD 1]
 gi|207086430|gb|EDZ63714.1| GGDEF domain/pas/pac sensor domain protein [Campylobacterales
           bacterium GD 1]
          Length = 662

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 11/179 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           +   + E     N++ +L+ ID L+G+ N       +         Y+E+ ++V FDID+
Sbjct: 487 TSQDITERIEMENKLQKLATIDSLTGIYNRHKTNEEIEIQLAKAKRYDEEFALVMFDIDH 546

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND +GH  GD ++   SD ++         GR GGEEF        + EA  +A+ 
Sbjct: 547 FKDVNDTYGHDAGDDILKEFSDVVLKHIRESDRFGRWGGEEFMLLLPKVDKDEAIRVADK 606

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +R+ +     N  S     IT+S G +     +   +++ R D+ALY AK SGRNRV+ 
Sbjct: 607 IREFVSRYPFNKLS----RITVSVGASIYRENDTKESLLKRTDEALYQAKSSGRNRVIF 661


>gi|167625701|ref|YP_001675995.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167355723|gb|ABZ78336.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 327

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 112/237 (47%), Gaps = 18/237 (7%)

Query: 40  ATVIFIANIFLF-YIGLTPFYGLEYILVENLSLVIISIT------ISLLLGYISGSILK- 91
           A + +    F+F +    P  G    + +N++L+ +S        IS+++  ++   +  
Sbjct: 92  AFISWEQRPFIFQFKNYRPITGRADFMYQNVTLLPLSSLTGEVTHISMIVYDVTDVAINK 151

Query: 92  -ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
            +L  +  R+  LS+ID LS L N   +   L         Y  + S+V  DID+FK IN
Sbjct: 152 LQLKSANERLEYLSQIDGLSQLFNRRHWEQCLQKEFDRHTRYGSETSLVMLDIDHFKAIN 211

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD+VI  +S  +          GR GGEEF      +    A   A  LRK I
Sbjct: 212 DTYGHQAGDRVIQNVSHTIKKSLRETDCAGRYGGEEFGVVLANTPAVNARFFAERLRKKI 271

Query: 204 ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           E  +I +     I +TIS GI + +       T + +ADQALY AK++GRN  + + 
Sbjct: 272 EKLEI-LYEEQLIKVTISIGICDIKPEVNDSDTWLSQADQALYQAKEAGRNCTIAYE 327


>gi|146283999|ref|YP_001174152.1| GGDEF domain-containing protein [Pseudomonas stutzeri A1501]
 gi|145572204|gb|ABP81310.1| GGDEF domain protein [Pseudomonas stutzeri A1501]
          Length = 466

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 65/199 (32%), Positives = 113/199 (56%), Gaps = 10/199 (5%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS----- 120
           V +L+L ++++ I LL      SI + L +++ +++QL+  D L+G+ +  AF++     
Sbjct: 269 VISLALSVVALLIFLLSSRYFQSIAR-LRLAHGQLAQLANTDVLTGVSSRRAFLAGLEAE 327

Query: 121 --SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                 +NE LS++  DID+FK++ND  GHP+GD V+   S+    +      +GRLGGE
Sbjct: 328 LARARRHNESLSLLMLDIDHFKRVNDVHGHPIGDAVLKQFSETCAGMLRAHDLLGRLGGE 387

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTII 237
           EFA     +  + A  +A  +R  +  + +  ++G  I +T+S G+A+       +  ++
Sbjct: 388 EFAIVLPHTDAEGARCVAEKIRTAVAQTPMPTAAG-DITVTVSIGLAQMEGLPGEVDQLM 446

Query: 238 YRADQALYVAKKSGRNRVV 256
            RADQALY AK+ GRN+V 
Sbjct: 447 ARADQALYEAKRGGRNQVR 465


>gi|239503815|ref|ZP_04663125.1| GGDEF family protein [Acinetobacter baumannii AB900]
 gi|323519787|gb|ADX94168.1| GGDEF domain-containing protein [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 397

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 80/282 (28%), Positives = 127/282 (45%), Gaps = 26/282 (9%)

Query: 6   KDFLSIWLCHEKNL-ESFSPHTFMIYFS------------IFFSIFI-ATVIFIANIFLF 51
                + LCH+  L  S SP T + Y              I +S FI AT+I     +L 
Sbjct: 110 VQAFMLMLCHDGYLIGSISPATMVGYVGTIGVGLVLFERKIVYSAFIPATIILAVCTYLS 169

Query: 52  YIG------LTPFYGLEYILVENLSL--VIISITISLLLGYISGSIL-KELFISYNRISQ 102
             G      L  F  + +       L  ++  I   L+  +I   IL  +       I +
Sbjct: 170 MTGVISYAPLFNFTAMRHAQTNPFWLGSMLFFIMPILVACFILFEILLTQWRQRETYIQR 229

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           LS+ID L+ +LN  +  + L + +E+    +++  DID+FK+IND +GH  GD+V+  ++
Sbjct: 230 LSQIDPLTNVLNRRSLNTHLEALHEQQFDYAVILLDIDHFKKINDIYGHHQGDQVLIEIA 289

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         +GR GGEEF      +   +A  +A   R+ ++   I  +    IH++
Sbjct: 290 QCLSENLRNEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRQALQELTIFNNQNIQIHVS 349

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            S GI+          +I +ADQALY  K SGRN+V  F  +
Sbjct: 350 ASFGISSSAFANDPYLVIRQADQALYAVKASGRNQVRTFHQL 391


>gi|6759486|emb|CAB69812.1| YkoW protein [Bacillus cereus ATCC 14579]
          Length = 892

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y    +++L+   I   ++  +     +  L+    ++  L+  D L+GL N   F   L
Sbjct: 423 YYYYLHITLIPTFINKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDL 482

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            +           ++++F D+D FK+IND  GH +GD ++  ++ +L     +   V R 
Sbjct: 483 KAILNTAQTNANDVAVIFLDLDRFKKINDRLGHELGDLLLIEVAKRLRGCLRSKDIVARQ 542

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           GG+EF        SE+ A  +A  +  I+  ++     G  + IT S GIA        +
Sbjct: 543 GGDEFTILLPEMYSEKSAIFIAEQILTIL--NKPFFIQGEELSITPSIGIAMYPDYGTDV 600

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + ++  AD A+Y AK +G+NR V FS   +
Sbjct: 601 NELMKNADMAMYRAKANGKNRFVFFSKEMS 630


>gi|300693354|ref|YP_003749327.1| modulator of rnase ii stability, signal transduction protein
           eal-ggdef domains (gmr) [Ralstonia solanacearum PSI07]
 gi|299075391|emb|CBJ34686.1| putative modulator of Rnase II stability, signal transduction
           protein eal-ggdef domains (gmr) [Ralstonia solanacearum
           PSI07]
          Length = 578

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 11/190 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
            +S   + ++  +  RI  L+  D L+GLLN SA    L            ++S++F D+
Sbjct: 120 LVSLVDITQIREAQQRIRHLATHDTLTGLLNRSALEDRLEHALALARRNRSRVSVMFLDL 179

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK +ND  GH  GD+++  ++ +L         V RLGG+EF              +A
Sbjct: 180 DRFKNVNDTLGHQFGDQLLREVATRLQACAREADTVARLGGDEFVVMLESLDSMGTRRVA 239

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             +   I         G  + + +S GIA   H  +  +T++ +AD A+Y+AK+ GRN  
Sbjct: 240 ERILAAI--GAPFHIDGQELFLGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNF 297

Query: 256 VCF-SDIENN 264
             F SD+++ 
Sbjct: 298 QTFTSDLDDR 307


>gi|311696694|gb|ADP99567.1| GGDEF domain-like protein [marine bacterium HP15]
          Length = 409

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 8/177 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            + +  +    + Q++  D L+GLLN           +     Y   +++++ D D+FK 
Sbjct: 223 DISDRKVLETELEQMATRDPLTGLLNRREMSRVLDEELQRARRYQRPMAVLWVDFDHFKD 282

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH  GD V+  +S  L+    +   +GR GGEEF         +EA   A  LR+
Sbjct: 283 VNDTYGHAAGDSVLRAISRLLLGSVRSVDSIGRFGGEEFVIVLPEMDLEEAQETAERLRR 342

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +      + +G ++ +TIS G+A    H +  ST+   AD+A+Y+AK  GRN V  
Sbjct: 343 KVAEEPQPLGNGEAVPLTISVGVAVYPDHGQTASTLCAAADKAMYLAKDRGRNCVAM 399


>gi|169794339|ref|YP_001712132.1| GGDEF domain-containing protein [Acinetobacter baumannii AYE]
 gi|213159087|ref|YP_002321084.1| GGDEF family protein [Acinetobacter baumannii AB0057]
 gi|332850144|ref|ZP_08432531.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332868980|ref|ZP_08438539.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
 gi|169147266|emb|CAM85125.1| putative membrane protein with GGDEF domain [Acinetobacter
           baumannii AYE]
 gi|213058247|gb|ACJ43149.1| GGDEF family protein [Acinetobacter baumannii AB0057]
 gi|332730993|gb|EGJ62299.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332733023|gb|EGJ64225.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
          Length = 397

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 78/282 (27%), Positives = 132/282 (46%), Gaps = 26/282 (9%)

Query: 6   KDFLSIWLCHEKNL-ESFSPHTFMIYFS------------IFFSIFI-ATVIFIANIFLF 51
                + LCH+  L  S SP T + Y              I +S FI AT+I     +L 
Sbjct: 110 VQAFMLMLCHDGYLIGSISPATMVGYVGTIGVGLVLFERKIVYSAFIPATIILAVCTYLS 169

Query: 52  YIGL---TPFYGLEYIL-VENLSLVIISITISLLLGYISGSILKELFISYNR-----ISQ 102
             G+    P +  + +   +     + S+   ++   ++  IL E+ ++  R     I +
Sbjct: 170 MTGVISYAPLFNFKTMRHAQTNPFWLGSMLFFIMPILVACFILFEILLTQWRQRETYIQR 229

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           LS+ID L+ +LN  +  + L + +E+    +++  DID+FK+IND +GH  GD+V+  ++
Sbjct: 230 LSQIDPLTNVLNRRSLNTHLEALHEQQFDYAVILLDIDHFKKINDIYGHHQGDQVLIEIA 289

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         +GR GGEEF      +   +A  +A   R+ ++   I  +    IH++
Sbjct: 290 RCLSENLRNEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRQALQELTIFNNQNIQIHVS 349

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            S GI+          +I +ADQALY  K SGRN+V  F  +
Sbjct: 350 ASFGISSSAFANDPYLVIRQADQALYAVKASGRNQVRTFHQL 391


>gi|114320653|ref|YP_742336.1| putative GAF sensor protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227047|gb|ABI56846.1| putative GAF sensor protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 689

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 106/205 (51%), Gaps = 12/205 (5%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSA 117
           +   +  +E  +++ ++  +++LL      +L  +L  +  R+ + +  D L+G+ N   
Sbjct: 485 HSAPWRDIEREAVLDLADEVAVLLSRKEIDLLNAQLTEANRRLKRQATTDSLTGVWNRYR 544

Query: 118 FISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
               +         Y    S++ FDID+FK +ND +GH  GD+V+  L+  +V       
Sbjct: 545 MQEQIELERGAHERYGTPCSLLLFDIDHFKAVNDQYGHEAGDQVLVALARAVVGELRATD 604

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
           F+GR GGEEF   A  S+ +EA  LA  LR+ I   +     GP   +TIS G+A     
Sbjct: 605 FLGRWGGEEFIVLATNSAPEEAWTLAERLRQCIAGLRFP-GVGP---VTISVGVASLSRG 660

Query: 231 EPISTIIYRADQALYVAKKSGRNRV 255
           + +  +I RAD+A+Y AK+ GRNRV
Sbjct: 661 DTVDRLIDRADRAMYRAKQRGRNRV 685


>gi|83747638|ref|ZP_00944674.1| Signal transduction protein EAL [Ralstonia solanacearum UW551]
 gi|83725690|gb|EAP72832.1| Signal transduction protein EAL [Ralstonia solanacearum UW551]
          Length = 580

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 11/190 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
            +S   + ++  +  RI  L+  D L+GLLN  A    L            ++S++F D+
Sbjct: 120 LVSLVDITQIREAQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRNGTRVSVMFLDL 179

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK IND  GH  GD+++  ++ +L         V RLGG+EF              +A
Sbjct: 180 DRFKNINDTLGHQFGDQLLREVAARLQACAREADTVARLGGDEFVVMLESLDGMGTRRVA 239

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             +   I         G  + + +S GIA   H  +  +T++ +AD A+Y+AK+ GRN  
Sbjct: 240 ERILAAI--GAPFHIEGQELFVGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNF 297

Query: 256 VCF-SDIENN 264
             F SD+++ 
Sbjct: 298 QTFTSDLDDR 307


>gi|189423670|ref|YP_001950847.1| diguanylate cyclase with GAF sensor [Geobacter lovleyi SZ]
 gi|189419929|gb|ACD94327.1| diguanylate cyclase with GAF sensor [Geobacter lovleyi SZ]
          Length = 669

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDY 138
           S    +EL  +   ++  +RID L+G+ N   F        +    YN  LS++  D+D+
Sbjct: 494 SRRAQQELKHANELLATEARIDFLTGIYNRRMFDGLLVAETARACRYNSPLSLIMLDLDH 553

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQIND  GH  GD V+  +++ +     +     R GGEEF      +   +AA+LA  
Sbjct: 554 FKQINDTQGHAAGDHVLQKVAELISGRIRSHDIFSRWGGEEFVILTPKNDTAQAAVLAEI 613

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           LR +IE        G  + +T S G+      EP    I RAD ALY AK +GRNRV
Sbjct: 614 LRDMIEQYDF----GNGLRLTCSFGVTRHICGEPAEVFIERADTALYQAKHNGRNRV 666


>gi|229587663|ref|YP_002869782.1| hypothetical protein PFLU0085 [Pseudomonas fluorescens SBW25]
 gi|229359529|emb|CAY46370.1| conserved GGDEF domain protein [Pseudomonas fluorescens SBW25]
          Length = 684

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 59/186 (31%), Positives = 87/186 (46%), Gaps = 11/186 (5%)

Query: 82  LGYISGSILKELFISYNRIS---QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           L     ++ +E       +    Q + ID L+GL N +A+   L             LS+
Sbjct: 499 LAERVANMEQEAQGYREHLEVQRQKALIDPLTGLPNRAAWSERLDHEVNAWHQRGNSLSL 558

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK+IND +GH  GD+V+  +++ L        F+ R GGEEF      SS  +
Sbjct: 559 AMLDLDHFKRINDGYGHLAGDRVLKIIANVLRKRLRPTDFIARFGGEEFVLLMPDSSLAD 618

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A      LR  IE    +   G  + IT+S G+A+    E     + RAD ALY AK +G
Sbjct: 619 ALAAVEVLRGAIEACPFHFK-GEPVTITVSMGVAQFQPGERSDLALKRADAALYRAKAAG 677

Query: 252 RNRVVC 257
           RN+V  
Sbjct: 678 RNQVQA 683


>gi|124267696|ref|YP_001021700.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylibium petroleiphilum PM1]
 gi|124260471|gb|ABM95465.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylibium petroleiphilum PM1]
          Length = 826

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 83/183 (45%), Gaps = 10/183 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            L E   +  RI +L+  D L+GL N       L         +    +++F D+D FKQ
Sbjct: 375 DLTETVAAQKRIEELAFTDALTGLPNRVMLAERLDFALAMSHRHQTPFALLFLDLDRFKQ 434

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD+V+  ++++L         V RLGG+EF      +  + A  +A  + +
Sbjct: 435 INDSLGHVFGDRVLVEVAERLKTCLRQIDTVARLGGDEFVMLLNQTDARGAEAIARRVLE 494

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++   Q     G S  +T S GIA      E +  +I  AD A+Y  K+ GR     +  
Sbjct: 495 VL--GQPFTLEGMSFSVTASIGIAMYPNDGESMDDLIKNADAAMYRVKERGRAGFRFYQP 552

Query: 261 IEN 263
             N
Sbjct: 553 QMN 555


>gi|184159860|ref|YP_001848199.1| GGDEF domain-containing protein [Acinetobacter baumannii ACICU]
 gi|183211454|gb|ACC58852.1| GGDEF domain protein [Acinetobacter baumannii ACICU]
          Length = 384

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 79/284 (27%), Positives = 131/284 (46%), Gaps = 28/284 (9%)

Query: 6   KDFLSIWLCHEKNL-ESFSPHTFMIYFS--------------IFFSIFI-ATVIFIANIF 49
                + LCH+  L  S SP T + Y                I +S FI AT+I     +
Sbjct: 95  VQAFMLMLCHDGYLIGSISPATMVGYVGTIGVGVGLVLFERKIVYSAFIPATIILAVCTY 154

Query: 50  LFYIGL---TPFYGLEYIL-VENLSLVIISITISLLLGYISGSILKELFISYNR-----I 100
           L   G+    P +    I   +     + S+   ++   ++  IL E+ ++  R     I
Sbjct: 155 LSMTGVISYAPLFNFTAIRHAQTNPFWLGSMLFFIMPILVACFILFEILLTQWRQRETYI 214

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            +LS+ID L+ +LN  +  + L + +E+    +++  DID+FK+IND +GH  GD+V+  
Sbjct: 215 QRLSQIDPLTNVLNRRSLNTHLEALHEQQFDYAVILLDIDHFKKINDIYGHHQGDQVLIE 274

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           ++  L         +GR GGEEF      +   +A  +A   R+ ++   I  +    IH
Sbjct: 275 IAQCLSENLRNEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRQALQELTIFNNQNIQIH 334

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           ++ S GI+          +I +ADQALY  K SGRN+V  F  +
Sbjct: 335 VSASFGISSSAFANDPYLVIRQADQALYAVKASGRNQVRTFHQL 378


>gi|294139118|ref|YP_003555096.1| sensory box/GGDEF family protein [Shewanella violacea DSS12]
 gi|293325587|dbj|BAJ00318.1| sensory box/GGDEF family protein [Shewanella violacea DSS12]
          Length = 314

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 67/218 (30%), Positives = 112/218 (51%), Gaps = 17/218 (7%)

Query: 57  PFYGLEYILVENLSLVIISIT------ISLLLGYISGSILKELFIS--YNRISQLSRIDC 108
           P  G    + +N++L+ +S        IS+++  ++   + +L +     R+  LS+ D 
Sbjct: 94  PITGRADFMYQNVTLLPLSSLTGQITHISMIVYDVTDVAINKLQLKSVNERLEHLSQTDG 153

Query: 109 LSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ L N   +             Y ++ S+V FDID+FK++ND +GH  GDKVI  +S  
Sbjct: 154 LTQLHNRRYWQICMQKEFDRHARYGDETSLVMFDIDHFKKVNDTYGHMAGDKVIQHISHL 213

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L          GR GGEEFA   + +S ++A   A  LR  IE +++ +  G  I +T+S
Sbjct: 214 LSQSLRETDCAGRYGGEEFAVVLVKTSAEDALKFAERLRNKIETTEL-VYEGKPIKVTVS 272

Query: 222 AGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            GI++   +       +  ADQALY AK++GRN+ + +
Sbjct: 273 MGISDLQDRVGNSGQWLSFADQALYKAKEAGRNKCLIY 310


>gi|299068767|emb|CBJ40007.1| putative modulator of Rnase II stability, signal transduction
           protein eal-ggdef domains (gmr) [Ralstonia solanacearum
           CMR15]
          Length = 625

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 11/190 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
            +S   + ++  +  RI  L+  D L+GLLN  A    L            ++S++F D+
Sbjct: 167 LVSLVDITQIREAQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRNRSRVSVMFLDL 226

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK +ND  GH  GD+++  ++ +L         V RLGG+EF              +A
Sbjct: 227 DRFKNVNDTLGHQFGDQLLREVAARLQACAREADTVARLGGDEFVVMLESLDGVGTRRVA 286

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             +   I         G  + + +S GIA   H  +   T++ +AD A+Y+AK+ GRN  
Sbjct: 287 ERILAAI--GAPFHIDGQELFLGVSIGIAVAPHDGDDPHTLLRKADAAMYLAKERGRNNF 344

Query: 256 VCF-SDIENN 264
             F SD+++ 
Sbjct: 345 QTFTSDLDDR 354


>gi|126643352|ref|YP_001086336.1| GGDEF domain-containing protein [Acinetobacter baumannii ATCC
           17978]
          Length = 360

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 80/282 (28%), Positives = 127/282 (45%), Gaps = 26/282 (9%)

Query: 6   KDFLSIWLCHEKNL-ESFSPHTFMIYFS------------IFFSIFI-ATVIFIANIFLF 51
                + LCH+  L  S SP T + Y              I +S FI AT+I     +L 
Sbjct: 73  VQAFMLMLCHDGYLIGSISPATMVGYVGTIGVGLVLFERKIVYSAFIPATIILAICTYLS 132

Query: 52  YIG------LTPFYGLEYILVENLSL--VIISITISLLLGYISGSIL-KELFISYNRISQ 102
             G      L  F  + +       L  ++  I   L+  +I   IL  +       I +
Sbjct: 133 MTGVISYAPLFNFTAMRHAQTNPFWLGSMLFFIMPILVACFILFEILLTQWRQRETYIQR 192

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           LS+ID L+ +LN  +  + L + +E+    +++  DID+FK+IND +GH  GD+V+  ++
Sbjct: 193 LSQIDPLTNVLNRRSLNTHLEALHEQQFDYAVILLDIDHFKKINDIYGHHQGDQVLIEIA 252

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         +GR GGEEF      +   +A  +A   R+ ++   I  +    IH++
Sbjct: 253 RCLSENLRNEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRQALQELTIFNNQNIQIHVS 312

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            S GI+          +I +ADQALY  K SGRN+V  F  +
Sbjct: 313 ASFGISSSAFANDPYLVIRQADQALYAVKASGRNQVRTFHQL 354


>gi|307153628|ref|YP_003889012.1| PAS/PAC sensors-containing diguanylate cyclase/phosphodiesterase
           [Cyanothece sp. PCC 7822]
 gi|306983856|gb|ADN15737.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7822]
          Length = 709

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 84/196 (42%), Gaps = 13/196 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132
           L+  YI    + E   S  ++   +  D L+GL N + F   L             L+I+
Sbjct: 249 LIRSYIF--DITERKHSEQQLKYQAFHDLLTGLPNRAWFNQQLNLALSNAKRQQVPLAIL 306

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QE 191
           F D+D FK IND  GH  GD+V+   + +L         V R GG+EF          ++
Sbjct: 307 FLDLDGFKNINDTLGHSFGDQVLQNFAKRLTGSIRAGDTVCRWGGDEFVILLPYVPHSED 366

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250
              LA  L +I++  Q         +I  S GIA   H  E   T++  AD ALY AK+ 
Sbjct: 367 TIKLAQRLLEILK--QPFEIQKQQFYIKTSMGIALYPHDGEDAETLLKNADAALYRAKER 424

Query: 251 GRNRVVCFSDIENNTC 266
           GRN    +S    +  
Sbjct: 425 GRNHYQFYSSTMTSKA 440


>gi|17548601|ref|NP_521941.1| hypothetical protein RS00808 [Ralstonia solanacearum GMI1000]
 gi|17430849|emb|CAD17531.1| probable signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum GMI1000]
          Length = 578

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 11/190 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
            +S   + ++  +  RI  L+  D L+GLLN  A    L            ++S++F D+
Sbjct: 120 LVSLVDITQIREAQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRNRSRVSVMFLDL 179

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK +ND  GH  GD+++  ++ +L         V RLGG+EF              +A
Sbjct: 180 DRFKNVNDTLGHQFGDQLLREVAARLQACAREADTVARLGGDEFVVMLESLDGTGTRRVA 239

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             +   I         G  + + +S GIA   H  +  +T++ +AD A+Y+AK+ GRN  
Sbjct: 240 ERILAAI--GAPFHIDGQELFLGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNF 297

Query: 256 VCF-SDIENN 264
             F SD+++ 
Sbjct: 298 QTFTSDLDDR 307


>gi|254504882|ref|ZP_05117033.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
 gi|222440953|gb|EEE47632.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
          Length = 543

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 63/216 (29%), Positives = 103/216 (47%), Gaps = 12/216 (5%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILK----ELFISYNRISQLSRIDCLSGLLNHS 116
           L Y++  +L+ V   + + +     S   LK    +L  +  ++  L+R D L+GL N  
Sbjct: 318 LLYLIPISLTSVFALVLVFMFFEERSKVRLKLAHGKLEQANRQLDALARQDALTGLANRR 377

Query: 117 AFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
           AF   L         +    S +  D+D FK IND  GH  GD+V+   +          
Sbjct: 378 AFFDRLDQLLNELDRHPHPASFLMLDLDKFKIINDTRGHAAGDEVLKAFASLCQETVRKV 437

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERC 228
             VGR+GGEEFA     +S ++A + A  LR  +   + + +   S +  T+S G++   
Sbjct: 438 DVVGRIGGEEFAILLPHTSAEDATVFAERLRTAVAAIRFSETGPLSGLTFTVSIGLSAIS 497

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            +    T + +AD+ALY +K SGRNRV  +  + N+
Sbjct: 498 ERIDARTWLSQADKALYQSKASGRNRVTVYQKLSND 533


>gi|300696950|ref|YP_003747611.1| modulator of Rnase II stability, signal transduction protein
           eal-ggdef domains (gmr) [Ralstonia solanacearum
           CFBP2957]
 gi|299073674|emb|CBJ53194.1| putative modulator of Rnase II stability, signal transduction
           protein eal-ggdef domains (gmr) [Ralstonia solanacearum
           CFBP2957]
          Length = 589

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 11/190 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
            +S   + ++  +  RI  L+  D L+GLLN  A    L            ++S++F D+
Sbjct: 130 LVSLVDITQIREAQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRNGTRVSVMFLDL 189

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK IND  GH  GD+++  ++ +L         V RLGG+EF              +A
Sbjct: 190 DRFKNINDTLGHQFGDQLLREVAARLQACAREADTVARLGGDEFVVMLESLDGMGTRRVA 249

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             +   I         G  + + +S GIA   H  +  +T++ +AD A+Y+AK+ GRN  
Sbjct: 250 ERILAAI--GAPFHIEGQELFVGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNF 307

Query: 256 VCF-SDIENN 264
             F SD+++ 
Sbjct: 308 QTFTSDLDDR 317


>gi|284050515|ref|ZP_06380725.1| response regulator receiver modulated diguanylate cyclase
           [Arthrospira platensis str. Paraca]
          Length = 311

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 89/175 (50%), Gaps = 9/175 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +   + +L+  D L+G+ N    +            Y    S++  DID+FK IND
Sbjct: 134 ELKQALVELEKLATTDPLTGIANRRHLLVLGEREFQRTHRYKNPFSVLMIDIDHFKLIND 193

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH +GDK +  +SD  V         GR GGEEF      +   EA ++A  +R+ I 
Sbjct: 194 NYGHSIGDKALKIMSDVTVNALRKVDIFGRFGGEEFVVFLPETKADEALVVAERIREAIA 253

Query: 205 NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
            + I +    +IHIT+S G+      E  +  ++  AD+ALY AKK GRN+VV +
Sbjct: 254 TTPIYVDD-QTIHITVSIGVTIYNSSEISLDGLLMEADKALYDAKKQGRNQVVIY 307


>gi|262376373|ref|ZP_06069602.1| predicted protein [Acinetobacter lwoffii SH145]
 gi|262308512|gb|EEY89646.1| predicted protein [Acinetobacter lwoffii SH145]
          Length = 476

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 124/249 (49%), Gaps = 12/249 (4%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL 81
             P   +I+ ++ + +F  T+I      L Y  LT FY   +  + + S + IS+ I L 
Sbjct: 229 LYPLAALIWAALTYRLFSMTLINAFVTILTYYSLTRFYATTHDTLAD-STIYISLRIGLF 287

Query: 82  LGYISGSIL----KELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNE-KLSIV 132
           +  +S  IL    +     + R+  L+  D L+  +N   F       L   N  + S++
Sbjct: 288 MLALSPLILCIISQNRNELFKRVLYLANHDSLTRTMNRHFFFQKGEYLLQYANRMEFSVI 347

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK++ND+FGH VGDKV+   ++ +           R+GGEEF      +   EA
Sbjct: 348 MLDIDHFKRLNDDFGHHVGDKVLQHFAEIIRCNLRAEDLFARIGGEEFVLLLWNTEPSEA 407

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKS 250
            ++A  +R ++E + I  S G  ++IT+S GI  +     + +  +I  ADQALY AK  
Sbjct: 408 RLIAERIRDLVEKTPIYQSDGSPLYITVSVGITHQNEPQAQDLQNLINIADQALYQAKHR 467

Query: 251 GRNRVVCFS 259
           GRN+VV  S
Sbjct: 468 GRNQVVLAS 476


>gi|294142585|ref|YP_003558563.1| GGDEF domain-containing protein [Shewanella violacea DSS12]
 gi|293329054|dbj|BAJ03785.1| GGDEF domain protein [Shewanella violacea DSS12]
          Length = 624

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 57/180 (31%), Positives = 95/180 (52%), Gaps = 11/180 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL  +  ++++ + +D L+G+ N +AF   L             ++++  DID FK I
Sbjct: 443 LRELNEANQKLTEQATVDSLTGVKNRAAFDKRLLAEGRLSRRQQTPMALLMLDIDRFKSI 502

Query: 143 NDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           NDN+GH  GD+ +  ++  L   +      V R GGEEFA     + E+ A  +A  +R+
Sbjct: 503 NDNYGHLAGDQALRLIAQTLKEQLKRPGDLVSRYGGEEFAIILPNTGEEGAMQVAELIRQ 562

Query: 202 IIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I    I+     SI +TIS G++       +  + ++ +AD+ALY AK  GRNRV+ +S
Sbjct: 563 TISELPISWKK-HSIPLTISIGVSAEIIERDQDPTKLLEQADKALYRAKNEGRNRVMVYS 621


>gi|261822226|ref|YP_003260332.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
 gi|261606239|gb|ACX88725.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
          Length = 490

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 71/199 (35%), Positives = 104/199 (52%), Gaps = 14/199 (7%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI---SS 121
           L++NL +      + L L +++      +     R+ Q++  D L+GL+N  AF      
Sbjct: 296 LLKNLGISAFVSILFLFLLWLT------IGGYQRRLEQMATTDKLTGLMNRQAFDYLFHR 349

Query: 122 LGS----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
           LG+     ++ LSI+  DID+FK+IND +GH VGD V+  +S  L     +     R GG
Sbjct: 350 LGTKSVLQHKSLSILLIDIDHFKKINDQYGHNVGDLVLQEISALLSTNTRSSDRSCRWGG 409

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EEF           A   A  LR+ IE + +    G +I +T+S G+AE    E +S +I
Sbjct: 410 EEFVILLDNCDINAAQQRAEALRQSIEITHLPYREG-TIKVTVSCGVAEYRAGETLSMLI 468

Query: 238 YRADQALYVAKKSGRNRVV 256
            RAD ALY AK+ GRNRVV
Sbjct: 469 NRADIALYQAKQQGRNRVV 487


>gi|193078679|gb|ABO13734.2| putative domain GGDEF protein [Acinetobacter baumannii ATCC 17978]
          Length = 397

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 80/282 (28%), Positives = 127/282 (45%), Gaps = 26/282 (9%)

Query: 6   KDFLSIWLCHEKNL-ESFSPHTFMIYFS------------IFFSIFI-ATVIFIANIFLF 51
                + LCH+  L  S SP T + Y              I +S FI AT+I     +L 
Sbjct: 110 VQAFMLMLCHDGYLIGSISPATMVGYVGTIGVGLVLFERKIVYSAFIPATIILAICTYLS 169

Query: 52  YIG------LTPFYGLEYILVENLSL--VIISITISLLLGYISGSIL-KELFISYNRISQ 102
             G      L  F  + +       L  ++  I   L+  +I   IL  +       I +
Sbjct: 170 MTGVISYAPLFNFTAMRHAQTNPFWLGSMLFFIMPILVACFILFEILLTQWRQRETYIQR 229

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           LS+ID L+ +LN  +  + L + +E+    +++  DID+FK+IND +GH  GD+V+  ++
Sbjct: 230 LSQIDPLTNVLNRRSLNTHLEALHEQQFDYAVILLDIDHFKKINDIYGHHQGDQVLIEIA 289

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         +GR GGEEF      +   +A  +A   R+ ++   I  +    IH++
Sbjct: 290 RCLSENLRNEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRQALQELTIFNNQNIQIHVS 349

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            S GI+          +I +ADQALY  K SGRN+V  F  +
Sbjct: 350 ASFGISSSAFANDPYLVIRQADQALYAVKASGRNQVRTFHQL 391


>gi|227329545|ref|ZP_03833569.1| hypothetical protein PcarcW_20268 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 490

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 91/167 (54%), Gaps = 8/167 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFI---SSLGS----YNEKLSIVFFDIDYFKQINDNFGHP 149
             R+ Q++  D L+GL+N  AF      LG+     ++ LSI+  DID+FK+IND +GH 
Sbjct: 322 QRRLEQMATTDKLTGLMNRQAFDYLFRRLGAKNALQHKSLSILLIDIDHFKRINDQYGHN 381

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD V+  +S  L     +     R GGEEF           A   A  LR  IE +QI 
Sbjct: 382 VGDFVLQGVSALLSSNTRSSDQSCRWGGEEFVILLDDCDINAAQQRAEALRHSIEIAQIP 441

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              G +I +T+S G+AE    E +S +I RAD ALY AK+ GRNRVV
Sbjct: 442 HREG-TIQVTVSCGVAEYRAGETLSMLINRADIALYQAKQQGRNRVV 487


>gi|144901289|emb|CAM78153.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 833

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 88/185 (47%), Gaps = 11/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + E   +  RI  L+  D L+GL N   F   L         +  +L+I+F D+D FK
Sbjct: 390 SDISERKKTEERIKNLAYFDVLTGLPNRRLFTDRLQVAIANAHRHGSQLAIMFLDLDLFK 449

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
           +IND+ GH +GD+V+  ++ +L         V RLGG+EF          ++AA LA+ +
Sbjct: 450 RINDSLGHGIGDQVLCEVAVRLEHCVREGDTVARLGGDEFVVLLPELDHVEDAAKLADRV 509

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
              ++  Q        +++T S GIA          T+I  AD A+Y AK  GRN    +
Sbjct: 510 ISHVK--QPLRIDEHELYVTTSVGIAVYPDDGLTDETLIKNADTAMYRAKDLGRNSYQLY 567

Query: 259 SDIEN 263
           +   N
Sbjct: 568 TPAMN 572


>gi|299135153|ref|ZP_07028344.1| response regulator receiver modulated diguanylate cyclase [Afipia
           sp. 1NLS2]
 gi|298590130|gb|EFI50334.1| response regulator receiver modulated diguanylate cyclase [Afipia
           sp. 1NLS2]
          Length = 458

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 58/167 (34%), Positives = 83/167 (49%), Gaps = 9/167 (5%)

Query: 102 QLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N                +  + L+++  DID+FK IND +GH  GD V
Sbjct: 290 EMAITDPLTGLHNRRYLEGHVGTLAEQAAARGKPLALMILDIDFFKSINDTYGHDAGDDV 349

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG- 213
           +   + ++           R GGEEF      +    A I+A  LR+ I N   +I  G 
Sbjct: 350 LREFATRIRKSIRGIDLAARYGGEEFVIVMPETDLHVAGIIAERLRRSIANEPFSIEKGT 409

Query: 214 PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I +TIS GI+    K EP++ ++ RADQALY AK  GRNRVV   
Sbjct: 410 KRIEVTISVGISMLEKKSEPVADVLKRADQALYRAKHDGRNRVVVAD 456


>gi|323702872|ref|ZP_08114530.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Desulfotomaculum nigrificans DSM 574]
 gi|323532130|gb|EGB22011.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Desulfotomaculum nigrificans DSM 574]
          Length = 808

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 84/183 (45%), Gaps = 11/183 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            + +         + QLS  D L+   N   F       I      + K S++  DID F
Sbjct: 630 ATDVTRYKKIEEELRQLSVTDVLTNAYNRRYFTQKLEEEIERAKRADRKFSLIILDIDRF 689

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND FGH  GD V+  +++ +         + R GGEEF      ++ + AA LA +L
Sbjct: 690 KSINDRFGHNAGDLVLKSIAELIKNRIRKIDTLARWGGEEFVILLPDTTVKNAARLAEEL 749

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           R+ +    I        H+T S G+A  C  + + T++ +AD  +Y AK +GRN V   +
Sbjct: 750 RESLSQMDIPGVG----HVTASFGVAGYCPGDMVDTLVNKADNMMYEAKAAGRNCVRYMN 805

Query: 260 DIE 262
           + E
Sbjct: 806 ECE 808


>gi|291614988|ref|YP_003525145.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291585100|gb|ADE12758.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 935

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 60/216 (27%), Positives = 98/216 (45%), Gaps = 18/216 (8%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  E +++ +I    + +  YI+    + E      RI  L+  D L+GL N       L
Sbjct: 469 IFPEWVTVSVIRDQQAAITHYIAIYMDITERKKEEERIQYLANYDVLTGLPNRYLLNDRL 528

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                    +  K++++F D+D+FK IND+ GH VGD ++  +S +L         + R 
Sbjct: 529 EQGLSLAQRHQTKVAVMFIDLDHFKNINDSLGHDVGDALLKMVSQRLKGCLRRSDTIARQ 588

Query: 176 GGEEFAAAALG-SSEQEAAILAND----LRKIIENSQINISSGPSIHITISAGIAERCHK 230
           GG+EF A     +SE E   +       LR+  E ++ ++S G SI ++I          
Sbjct: 589 GGDEFVALLGDLNSEDEVTFVCEKMLHSLREEFEVAEYHLSVGTSIGVSI-----YPDDG 643

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           E    ++  AD A+Y AK +GRNR   +    N   
Sbjct: 644 ETSVQLLRNADLAMYRAKDAGRNRFEYYKPEMNTKA 679


>gi|157373761|ref|YP_001472361.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157316135|gb|ABV35233.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 323

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 72/219 (32%), Positives = 112/219 (51%), Gaps = 17/219 (7%)

Query: 57  PFYGLEYILVENLSLVIISIT------ISLLLGYISGSILK--ELFISYNRISQLSRIDC 108
           P  G    + +N++L+ +S        ISL++  ++   +   +L  +  R+  LS+ D 
Sbjct: 101 PITGRADFMYQNVTLLPLSSLTGQITHISLIVYDVTDVAINKLQLKAANERLEHLSQTDG 160

Query: 109 LSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ L N   +             Y +K S+V FDID+FK+INDN+GH  GDKVI  +S  
Sbjct: 161 LTQLHNRRHWQMCMQKEFDRHSRYGDKTSLVMFDIDHFKKINDNYGHLAGDKVIQHISHL 220

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L          GR GGEEF+     +  + A   A+ LRK IE S++ +    +I +T+S
Sbjct: 221 LKQSLRETDCAGRYGGEEFSVVLAHTCAKGALNFADRLRKKIEKSEL-VFEKETIKVTVS 279

Query: 222 AGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            GI++   + E     +  AD+ALY AK+SGRN  V + 
Sbjct: 280 MGISDINDQLENSGQWLAYADRALYQAKESGRNNCVIYD 318


>gi|117925921|ref|YP_866538.1| diguanylate cyclase [Magnetococcus sp. MC-1]
 gi|117609677|gb|ABK45132.1| diguanylate cyclase [Magnetococcus sp. MC-1]
          Length = 220

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 62/211 (29%), Positives = 111/211 (52%), Gaps = 10/211 (4%)

Query: 58  FYGLEYILV---ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           +  ++++L    E    +I +  +  ++  +   ++  L  +  ++  ++  D L+G+LN
Sbjct: 3   WLQIDWMLAPSEEAHQFLIFNSIMRTIISLVGAWLIYSLRKALQQLEVMATHDKLTGILN 62

Query: 115 HSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
              F             ++  L++V  DID+FK+IND+FGH +GD V+  L  +L     
Sbjct: 63  RHGFQERGKYIIDQSQRHSWPLAVVMMDIDHFKKINDSFGHDIGDLVLQSLGSELKKSVR 122

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
           +   V RLGGEEFA     +  + A  +A+ +RK IE S++++  G  +  T+S G+   
Sbjct: 123 STDIVARLGGEEFALILPNTDSKHAHQIADSIRKKIETSRLSLPDGKFLTYTLSLGVTSG 182

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              + +  ++ +AD ALY AK +GRNRVV F
Sbjct: 183 LGIDKMDLLLNQADNALYRAKGTGRNRVVSF 213


>gi|330950877|gb|EGH51137.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 417

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 94/185 (50%), Gaps = 12/185 (6%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           +  Y+S    +        ++ +++  D L+GL N  +   +L           +  S++
Sbjct: 236 ITHYVSISQDVTTRLGREQKLLEIAHSDPLTGLDNRRSAEHTLERQIPAVSMSGKPFSLI 295

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK +ND +GHP GD VI  ++  L           R GGEEF      SS ++A
Sbjct: 296 ICDIDHFKAVNDRYGHPAGDSVITSVAAILKQRIRLLDVAARWGGEEFLILVPDSSLKQA 355

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           A LA  +RK +E+  I      +  +TIS G+AE    E  +++I RADQALY AK+ GR
Sbjct: 356 AELAERIRKSVESLVIP----ETGSVTISLGVAELSAGETAASLIQRADQALYQAKRLGR 411

Query: 253 NRVVC 257
           NRV C
Sbjct: 412 NRVEC 416


>gi|193299441|gb|ACF17869.1| DcpA [Vibrio vulnificus]
          Length = 379

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 65/189 (34%), Positives = 102/189 (53%), Gaps = 11/189 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
            +  +  +++  I K      N++ +L+ +D L+G LN  AF+ +          Y+ K 
Sbjct: 188 ILETIAKWVAAQIYK--HKQINKMIELAHLDPLTGALNRRAFVEATYFINDKPRQYDHKT 245

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  D+D FK IND +GHPVGDKV+  ++  L     +   V RLGGEEFA      + 
Sbjct: 246 ALLMLDLDKFKAINDAYGHPVGDKVLIEIAQILKNSVRSDDLVARLGGEEFAILLRHVNA 305

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAK 248
            EA  LA  LR ++E + +   +  +IH TIS GIA      +    ++ RAD ALYVAK
Sbjct: 306 DEALRLAELLRAMVEQTVVEHQN-QAIHCTISIGIALPLPTDQGFEELMQRADNALYVAK 364

Query: 249 KSGRNRVVC 257
           + GRN+++ 
Sbjct: 365 RKGRNQIIL 373


>gi|311693671|gb|ADP96544.1| sensory box/GGDEF family protein [marine bacterium HP15]
          Length = 916

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 11/188 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           +S   L +L  + + + +L+  D L+GL N   F   L           E  +++F D+D
Sbjct: 465 LSLRDLTQLKAAQSELHRLAFYDPLTGLANRQLFRDRLNHVVSRSRRSGEPAALMFLDLD 524

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILA 196
            FK+IND  GH  GD+++  ++  LV        V RLGG+EF       S+ +AA  +A
Sbjct: 525 GFKRINDTLGHDSGDELLCQVAQWLVGCVREEDSVARLGGDEFVVLLSRISDSDAAGKVA 584

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             + + +   Q    +   + IT+S GI    H  E   T++  AD A+Y AK+ GRN  
Sbjct: 585 ETILRSL--CQRIRLNDHEVGITVSIGITMIPHDSEDAGTLMKYADLAMYRAKELGRNTF 642

Query: 256 VCFSDIEN 263
             F+   N
Sbjct: 643 QFFTPAMN 650


>gi|172056342|ref|YP_001812802.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15]
 gi|171988863|gb|ACB59785.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15]
          Length = 361

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 112/226 (49%), Gaps = 7/226 (3%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101
            + +  I + Y  L   Y L       L + ++ I   LL GY++ S L+EL   +  + 
Sbjct: 137 YLVLIGIGIGY-SLPALYLLTETFNRFLEIALVYIIFILLGGYVTYSFLQELRKHFQFVQ 195

Query: 102 ---QLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
              +L+  D L+ L N      +L SY++     S++  DID+FK +ND +GH  GD V+
Sbjct: 196 TQQELALTDGLTNLANRRKLDETLASYDKYGFAFSVLIVDIDFFKSVNDTYGHDGGDVVL 255

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             LS  L         VGR GGEEF      +  ++A  L   +R    +     S+ P+
Sbjct: 256 RQLSHLLEHCCPDQALVGRYGGEEFVVLLPDTPLKDAVRLGETIRLACADQHFVFSTYPA 315

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            H+T+S G A     E    +I +ADQ+LY AK++GRN+VV +S+ 
Sbjct: 316 FHVTLSIGAASSDQGETSFEVIQKADQSLYQAKQTGRNKVVAYSEE 361


>gi|222148304|ref|YP_002549261.1| response regulator PleD [Agrobacterium vitis S4]
 gi|221735292|gb|ACM36255.1| two component response regulator [Agrobacterium vitis S4]
          Length = 457

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 18/222 (8%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLL-LGYISGSILKELFIS--YNRIS-------Q 102
           I L    G EY++V  L L +    +  +    +    L +L      +R+        +
Sbjct: 232 ILLIADQGEEYLIVRALDLGVNDYIVRPVDTNELLARTLTQLRRKRYNDRLRSSVQQTIE 291

Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N     + +           + LS+   DID FK +ND +GH  GD V+
Sbjct: 292 LAVTDDLTGLHNRRYLDTHIKVLFERSSLRKQPLSVCLVDIDRFKLVNDTYGHEAGDDVL 351

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              + ++           R GGEEF      +S++ A  +A  LR+++E     + SG  
Sbjct: 352 REFAARIRATVRGADLACRYGGEEFVVVMPDTSQEMAGTVAERLREMVEKKPFRLQSGGE 411

Query: 216 IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           +++T S GIA    +      ++ +AD+ALY AK  GRNRVV
Sbjct: 412 LNVTASLGIATAGDEVASPEQLLRQADRALYQAKTEGRNRVV 453


>gi|120596930|ref|YP_961504.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella sp. W3-18-1]
 gi|120557023|gb|ABM22950.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella sp. W3-18-1]
          Length = 1216

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           Y   + L + ++      +  YI S + + E  +S  RI  L+  D L+ L N  +  SS
Sbjct: 749 YDFPKWLMMSVVRDESGAVSHYIGSFTDISERKMSEERIHFLAHHDSLTLLPNRLSLQSS 808

Query: 122 LG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L        +   +++++F D+D+FK IND  GH VGD+++  ++ +L  +      V R
Sbjct: 809 LEIVFGEALASQSQIAVMFIDMDHFKNINDTLGHHVGDQLLLEVARRLKNIVDNNDIVAR 868

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           LGG+EF      ++  E A LA  LR  +  SQ  I    S+H + S GI+        +
Sbjct: 869 LGGDEFVVVLSDTNHDEVASLAEALRSGL--SQTYIIDNNSLHSSPSIGISLFPTDGNTV 926

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             ++  AD A+Y AK +GRN    F+   N
Sbjct: 927 EALMKNADMAMYRAKAAGRNNYQFFTAAMN 956


>gi|260550179|ref|ZP_05824392.1| GGDEF family protein [Acinetobacter sp. RUH2624]
 gi|260406707|gb|EEX00187.1| GGDEF family protein [Acinetobacter sp. RUH2624]
          Length = 397

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 82/284 (28%), Positives = 129/284 (45%), Gaps = 26/284 (9%)

Query: 6   KDFLSIWLCHEKNL-ESFSPHTFMIYFS------------IFFSIFI-ATVIFIANIFLF 51
                + LCH+  L  S SP T + Y              I +S FI AT+I     +L 
Sbjct: 110 VQAFMLMLCHDGYLIGSISPATMVGYVGTIGVGLVLFERKIVYSAFIPATIILAVCTYLS 169

Query: 52  YIGLTP------FYGLEYILVENLSL--VIISITISLLLGYISGSIL-KELFISYNRISQ 102
             G+ P      F  + +       L  ++  I   L+  +I   IL  +       I +
Sbjct: 170 MNGVIPYAPLFNFTAIRHAQTNPFWLGSMLFFIMPILVACFILFEILLTQWRQRETYIQR 229

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           LS+ID L+ +LN  +  + L + +E+    ++V  DID+FK+IND +GH  GD+V+  ++
Sbjct: 230 LSQIDPLTNVLNRRSLNAHLETLHEQQFDYALVLLDIDHFKKINDVYGHHQGDQVLIKIA 289

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L     T   +GR GGEEF      +   +A  +A   R  ++   I  +    IH++
Sbjct: 290 QCLSENLRTEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRLALQGLSIFNNQNIQIHVS 349

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            S GI+          +I +AD+ALY  K SGRN+V  F  I +
Sbjct: 350 ASFGISSSAFANDPYIVIRQADEALYAVKASGRNQVRTFQQIPH 393


>gi|94972207|ref|YP_594247.1| diguanylate cyclase [Deinococcus geothermalis DSM 11300]
 gi|94554258|gb|ABF44173.1| diguanylate cyclase, GAF, HAMP domains protein [Deinococcus
           geothermalis DSM 11300]
          Length = 555

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 56/166 (33%), Positives = 78/166 (46%), Gaps = 8/166 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q S  D L+GL N              +    + LS++  D+D+FKQ ND +GH +GD
Sbjct: 379 LRQQSIRDPLTGLYNRRYLEETFTRELARVQRRRQPLSLLMIDVDHFKQHNDTYGHALGD 438

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++  L+  L   F T   V R GGEEF          +A   A  LR+ +EN  +  + 
Sbjct: 439 TLLRRLATHLQRFFRTEDIVCRYGGEEFVVLLPECDAPQAQARAEALRRSVENLAVTSND 498

Query: 213 GPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
              + +TIS G A    H      ++ RAD ALY AK  GRNRV  
Sbjct: 499 AEFVALTISIGGASWPDHATTPEDLLARADAALYRAKHRGRNRVEF 544


>gi|149374713|ref|ZP_01892487.1| Putative diguanylate cyclase (GGDEF)/ phosphodiesterase (EAL) with
           PAS/PAC and Chase sensors [Marinobacter algicola DG893]
 gi|149361416|gb|EDM49866.1| Putative diguanylate cyclase (GGDEF)/ phosphodiesterase (EAL) with
           PAS/PAC and Chase sensors [Marinobacter algicola DG893]
          Length = 908

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 58/189 (30%), Positives = 90/189 (47%), Gaps = 13/189 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           +S   L +L  +   + +L+  D L+GL N   F   L           E  +++F D+D
Sbjct: 457 LSLRDLTQLKAAQTELHRLAFYDPLTGLANRQLFRDRLNHVVRRSRRSEEPAALMFLDLD 516

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILA 196
            FK+IND  GH  GD+++  +S  L         V RLGG+EF       S  +AA  +A
Sbjct: 517 GFKRINDTLGHDSGDELLKQVSQWLTGCVREEDSVARLGGDEFVVLLSRISGPDAAGKVA 576

Query: 197 NDL-RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
             + R++ +  ++N      + IT+S GI    H  E   T++  AD A+Y AK+ GRN 
Sbjct: 577 EAILRRLCQRIRLN---DHEVGITVSIGITMIPHDSEDPGTLMKYADLAMYRAKELGRNT 633

Query: 255 VVCFSDIEN 263
              F+   N
Sbjct: 634 YQFFTPAMN 642


>gi|51244314|ref|YP_064198.1| hypothetical protein DP0462 [Desulfotalea psychrophila LSv54]
 gi|50875351|emb|CAG35191.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 481

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 95/200 (47%), Gaps = 13/200 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI----- 119
           L+ NL + +I   I L   Y++      +     ++ +++  D L+G+ N   F      
Sbjct: 285 LMINLGISLIITGIILFFAYLT------IGGYQRKLEEMATTDSLTGIANRQIFDILFNQ 338

Query: 120 --SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                      LS + FD+D+FK+IND++GHP GD ++  +S     +      + R GG
Sbjct: 339 MSKHSRRQGWPLSAIMFDLDHFKKINDSYGHPAGDLILKAVSQIAQNILRDSDILCRWGG 398

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EEF       +  +A  +A  +R+ +E +   I +   I IT S G+      +    +I
Sbjct: 399 EEFLILLPNCNTAQAQGVAEKIRQGLETASELIYNQQLISITASFGLTTLQDYDSKDELI 458

Query: 238 YRADQALYVAKKSGRNRVVC 257
            RAD ALY AK++GRNRV  
Sbjct: 459 KRADIALYAAKENGRNRVEV 478


>gi|225849660|ref|YP_002729894.1| signal transduction response regulator [Persephonella marina EX-H1]
 gi|225644826|gb|ACO03012.1| signal transduction response regulator [Persephonella marina EX-H1]
          Length = 509

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 85/256 (33%), Positives = 127/256 (49%), Gaps = 27/256 (10%)

Query: 16  EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLE--YILVEN---LS 70
           + NLE F P +  +  +  +  +IA+ I I+N    YIG   +Y  +  Y + +N   +S
Sbjct: 256 KGNLEDFKPKSIAVDINGDY--YIASFIPISNKKEKYIGYLVYYEKDNTYGVFKNTFIIS 313

Query: 71  LVIISITISLLL--GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121
            V I++ + LLL   +I G ++KE F +      ++ ID L+G+ N   F       +  
Sbjct: 314 YVGINLLVGLLLTMSFILG-VIKERFKA------MAEIDTLTGIYNKGKFNHLLQVELDR 366

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              Y   LS++ FDID+FK+IND FGH  GD V+  L+  +     +  F  R GGEEF 
Sbjct: 367 SKRYGRPLSLIIFDIDHFKKINDAFGHQAGDYVLKTLAKIVSSNIRSTDFFARWGGEEFV 426

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
             A  +  + A ILA  +RK IE             +T S G+ E    + + + + RAD
Sbjct: 427 ILAPETDLEGAQILAEKIRKAIEEYPFETVG----KVTSSFGVTEAFENDTVDSFVKRAD 482

Query: 242 QALYVAKKSGRNRVVC 257
            ALY AK  GRNRV  
Sbjct: 483 VALYKAKDKGRNRVEI 498


>gi|74317474|ref|YP_315214.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Thiobacillus denitrificans ATCC 25259]
 gi|74056969|gb|AAZ97409.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 1212

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 12/209 (5%)

Query: 67  ENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--- 122
           + +++ ++     +L  Y+ S + + E  ++  +I  L+  D L+GL N  +  + L   
Sbjct: 746 KWMAVSVVRDADGVLTHYVASFTDITERKLAEAQIKHLAYHDPLTGLSNRFSLQTQLDQT 805

Query: 123 ----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                     L++VF D+D FK IND+ GH +GD+++  ++ +L         V RLGG+
Sbjct: 806 LALARREQRTLAVVFLDLDRFKSINDSLGHALGDQLLVEVARRLRDNVRDSDIVARLGGD 865

Query: 179 EFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTI 236
           EF            AA +A+ L   +         G ++H T S GI+   H  +    +
Sbjct: 866 EFVVVLTEVGDAAGAARVADKLLGAL--VPRYRIGGHALHTTASIGISLYPHDGDDADAL 923

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENNT 265
           +  AD A+Y AK  GR+ V  F+   N +
Sbjct: 924 MKNADTAMYHAKSQGRDNVQFFTPEMNQS 952


>gi|330939045|gb|EGH42501.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 418

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 12/182 (6%)

Query: 84  YIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFD 135
           Y+S    +        ++ +++  D L+GL N  +   +L           +  S++  D
Sbjct: 240 YVSISQDVTTRLGREQKLLEIAHSDPLTGLDNRRSAEHTLERQIPAVSMSGKPFSLIICD 299

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK +ND +GHP GD VI  ++  L           R GGEEF      SS ++AA L
Sbjct: 300 IDHFKAVNDRYGHPAGDSVITSVAAILKQRIRLLDVAARWGGEEFLILVPDSSLKQAAEL 359

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A  +RK +E+  I      +  +TIS G+AE    E  +++I RAD+ALY AK+ GRNRV
Sbjct: 360 AERIRKSVESLVIP----ETGSVTISLGVAELSAGETAASLIQRADKALYQAKRLGRNRV 415

Query: 256 VC 257
            C
Sbjct: 416 EC 417


>gi|296134149|ref|YP_003641396.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermincola sp. JR]
 gi|296032727|gb|ADG83495.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermincola potens JR]
          Length = 692

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 104/218 (47%), Gaps = 15/218 (6%)

Query: 62  EYILVENLSLVIISITISLLLG----YISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           EY++   + ++ +++T ++  G    +  G  + E   +  ++ +++  D L+GL N + 
Sbjct: 204 EYLIKNRIKIMELTVTPAIWQGKAVVFGVGKDITERKQAEEKMRRMAYYDSLTGLPNRAF 263

Query: 118 FISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           F   L        S  +KL+I+F D+D FK +ND  GH VGD+++  ++ +L    G   
Sbjct: 264 FKEKLTAAIIKSRSKKQKLAILFLDLDRFKTVNDIMGHDVGDQLLKDVAKRLKKRVGKGR 323

Query: 171 FVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
            V RL G+EF       S  ++    A D+ + +   +    +G + H+T S GI     
Sbjct: 324 VVARLSGDEFIILLPNVSRIEDVRKFAEDVCENLR--KPFTIAGRNFHVTTSIGITVFPD 381

Query: 230 -KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             E   T++  AD A+Y AK+ G N    ++   N   
Sbjct: 382 NGEDAKTLLKNADIAMYKAKEQGGNSYEVYTFAMNEMA 419


>gi|229591627|ref|YP_002873746.1| putative sensory box GGDEF/EAL domain-containing protein
           [Pseudomonas fluorescens SBW25]
 gi|229363493|emb|CAY50722.1| putative sensory box GGDEF/EAL domain protein [Pseudomonas
           fluorescens SBW25]
          Length = 1100

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 16/197 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
            ++   +  L  +  +I  L+  D L+ L N +  +  L         +N + +++F D+
Sbjct: 643 LLTARDVSLLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDL 702

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS------EQ 190
           D+FK IND+ GHPVGD V+  ++ +L         V RLGG+EF     G          
Sbjct: 703 DHFKHINDSLGHPVGDTVLKIVTARLEASVRMEDTVARLGGDEFVVLLSGLDGSRMEVSA 762

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKK 249
           +   LA+ LR+++  S+     G  + +T S G+A    H    + ++ RAD ALY AK 
Sbjct: 763 QVQELADTLRELL--SEPMFLDGHRLQVTPSIGVALIPDHGSTPADLLKRADIALYRAKD 820

Query: 250 SGRNRVVCFSDIENNTC 266
           SGRN    F +    T 
Sbjct: 821 SGRNTTQMFHNSMQKTA 837


>gi|296132513|ref|YP_003639760.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermincola sp. JR]
 gi|296031091|gb|ADG81859.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermincola potens JR]
          Length = 706

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 83/191 (43%), Gaps = 12/191 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           I    + E  ++   I   +  D L+GL N   F   L           + L+++F D+D
Sbjct: 262 IFFYDITERKMAEEAIKHQAYHDPLTGLPNRILFKDRLTQTLAQAKRSKQMLALMFLDLD 321

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILA 196
            FK IND  GH  GD+ +  +S +L     +   V RLGG+EF       +  ++A  +A
Sbjct: 322 RFKNINDTLGHATGDQFLQGISKRLTGCIRSGDTVARLGGDEFTLLLPQINHVEDAIKVA 381

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             +    +  +  I  G   +IT S GIA      E   T++  AD A+Y AK+ G N  
Sbjct: 382 QKIIDTFK--KPWILGGHEFYITTSIGIALYPNDGEDAETLMKHADTAMYRAKERG-NNY 438

Query: 256 VCFSDIENNTC 266
             +S   N   
Sbjct: 439 QLYSPSMNEKA 449


>gi|146282566|ref|YP_001172719.1| sensory box/GGDEF family protein [Pseudomonas stutzeri A1501]
 gi|145570771|gb|ABP79877.1| sensory box/GGDEF family protein [Pseudomonas stutzeri A1501]
          Length = 294

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 107/225 (47%), Gaps = 17/225 (7%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVII------SITISLLLGYISGSIL--KELFISYNRI 100
            L +    P  GL   + +N +L+ +         + L++  ++   +  ++L  +   +
Sbjct: 68  LLRFKNYQPITGLVDFMYQNTTLLPLKGINGSIDQVCLIIYDVTDVAVNRRQLQAANAEL 127

Query: 101 SQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +LS  D L+GL N   +   L         Y+ + ++V FDID+FK IND +GH VGD 
Sbjct: 128 QRLSSTDRLTGLYNRGHWEEMLRLDYARHRRYDSQAALVMFDIDHFKSINDTYGHQVGDA 187

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           VI  +++ +          GR GGEEF      + +Q A   A  LR  +E+ +++    
Sbjct: 188 VIQQVAELIRENLRDSDVAGRYGGEEFVVLLPDTDKQGALTFAERLRHAVESHEVHHEQ- 246

Query: 214 PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             I  TIS G+A+        + +I  AD ALY +K +GRNRV  
Sbjct: 247 HRIRFTISLGVADLSVPSSSHAQLIEWADSALYASKAAGRNRVTL 291


>gi|152998825|ref|YP_001364506.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|151363443|gb|ABS06443.1| diguanylate cyclase [Shewanella baltica OS185]
          Length = 486

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 99/191 (51%), Gaps = 11/191 (5%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------N 126
           +S+ ++L + +IS      L     ++  ++  D L+G  N   F               
Sbjct: 297 LSLMVTLGILFISNMT---LGRYQRKLEVMASTDKLTGAANRQVFDEYFRQALDKAKLAQ 353

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             +SI+  DID+FK++ND++GH +GD V+  +++ L         + R GGEEF     G
Sbjct: 354 SPISILLLDIDHFKKVNDSYGHGIGDLVLKTMTNMLRGALQQEDILCRWGGEEFLILLPG 413

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
                AA LA  +R++I   +I + +G  I IT S G+AE   +EP   +I RAD ALY 
Sbjct: 414 MDLTRAAELAEQIRELIFQREIKV-NGLHISITASIGVAEHQAQEPAEDLIKRADLALYQ 472

Query: 247 AKKSGRNRVVC 257
           AK++GRN+VV 
Sbjct: 473 AKEAGRNQVVL 483


>gi|307293714|ref|ZP_07573558.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingobium chlorophenolicum L-1]
 gi|306879865|gb|EFN11082.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingobium chlorophenolicum L-1]
          Length = 722

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
             + +   +  RI  ++  D L+GL N + F   L         ++ +++++  D+D FK
Sbjct: 252 RDITDRKEAEARIRYMALHDALTGLPNRTLFEDRLDNAIAQARRHHGQVAVLMLDLDRFK 311

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
            IND+ GH VGD+++  ++ +L           RLGG+EFA       S ++A I+A  +
Sbjct: 312 NINDSLGHHVGDELLEQVAARLRACLRESDTAARLGGDEFAIILPEIASIEDAEIVAKRI 371

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCF 258
            ++++  +        ++I  S GIA          T++  AD A+Y AK  GR     F
Sbjct: 372 LEVLQ--EPFHVEQHELNIGGSIGIARYPDDGTDHGTLLRAADAAMYDAKAQGRGMYRFF 429

Query: 259 SDIENNTC 266
           S   N   
Sbjct: 430 SPELNEAA 437


>gi|217971485|ref|YP_002356236.1| diguanylate cyclase [Shewanella baltica OS223]
 gi|217496620|gb|ACK44813.1| diguanylate cyclase [Shewanella baltica OS223]
          Length = 486

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 99/191 (51%), Gaps = 11/191 (5%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------N 126
           +S+ ++L + +IS      L     ++  ++  D L+G  N   F               
Sbjct: 297 LSLMVTLGILFISNMT---LGRYQRKLEVMASTDKLTGAANRQVFDEYFRQALDKAKLAQ 353

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             +SI+  DID+FK++ND++GH +GD V+  +++ L         + R GGEEF     G
Sbjct: 354 SPISILLLDIDHFKKVNDSYGHGIGDLVLKTMTNMLRGALQQEDILCRWGGEEFLILLPG 413

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
                AA LA  +R++I   +I + +G  I IT S G+AE   +EP   +I RAD ALY 
Sbjct: 414 MDLTRAAELAEQIRELIFQREIKV-NGLHISITASIGVAEHQAQEPAEDLIKRADLALYQ 472

Query: 247 AKKSGRNRVVC 257
           AK++GRN+VV 
Sbjct: 473 AKEAGRNQVVL 483


>gi|163782280|ref|ZP_02177278.1| hypothetical protein HG1285_05820 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882313|gb|EDP75819.1| hypothetical protein HG1285_05820 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 620

 Score =  208 bits (530), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 68/201 (33%), Positives = 94/201 (46%), Gaps = 15/201 (7%)

Query: 76  ITISLLLGYISGSILK-----ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLG 123
           + + +L+ YI G + +     E       + Q S ID L+GL N              + 
Sbjct: 415 VFVRMLIPYIKGYLQEASPVLESKSLMELLQQQSYIDQLTGLYNRRFLDEIADKLSAQVK 474

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                L I+  DIDYFKQIND +GH VGD+V+  ++  +        +V R GGEE    
Sbjct: 475 RRGTSLGILMIDIDYFKQINDKYGHDVGDRVLKEIASIIKSSVREADYVIRFGGEEILVL 534

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRAD 241
            +   E  A  +A  +R+ IEN  I IS G  I  T+S G++E            I  AD
Sbjct: 535 LVDVREGTAKKVAEKIRRAIENKVIEISGGV-IKKTVSIGVSEFPKDCDGKFWQCIKFAD 593

Query: 242 QALYVAKKSGRNRVVCFSDIE 262
            ALY AK+ GRNRVV F+   
Sbjct: 594 VALYRAKEEGRNRVVRFTPEM 614


>gi|289678107|ref|ZP_06498997.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 418

 Score =  208 bits (530), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 12/182 (6%)

Query: 84  YIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFD 135
           Y+S    +        ++ +++  D L+GL N  +   +L           +  S++  D
Sbjct: 240 YVSISQDVTTRLGREQKLLEIAHSDPLTGLDNRRSAEHTLERQIPAVSMSGKPFSLIICD 299

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK +ND +GHP GD VI  ++  L           R GGEEF      SS ++AA L
Sbjct: 300 IDHFKAVNDRYGHPAGDSVITSVAAILKQRIRLLDVAARWGGEEFLILVPDSSLKQAAEL 359

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A  +RK +E+  I      +  +TIS G+AE    E  +++I RAD+ALY AK+ GRNRV
Sbjct: 360 AERIRKSVESLVIP----ETGSVTISLGVAELGAGETAASLIQRADKALYQAKRLGRNRV 415

Query: 256 VC 257
            C
Sbjct: 416 EC 417


>gi|226311854|ref|YP_002771748.1| signaling protein [Brevibacillus brevis NBRC 100599]
 gi|226094802|dbj|BAH43244.1| probable signaling protein [Brevibacillus brevis NBRC 100599]
          Length = 815

 Score =  208 bits (530), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 10/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + E   +   I  ++  D L+ L N + F   L          +EK+ ++F D+D FK 
Sbjct: 370 DITERKKAEETIRYMAHYDSLTNLPNRTLFHEKLAEAMLKAKQKDEKIGVMFIDLDRFKN 429

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH +GD ++  ++++L+        V RLGG+EFA    G + +EA  +A  +  
Sbjct: 430 INDTLGHSIGDVLLQAVANRLICCLRKEDSVSRLGGDEFAIFLTGVTHREAGEIAQRIIT 489

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +  S         I IT S GI+      + I  ++  AD A+Y+AK+ G+N    FS+
Sbjct: 490 SMSESI--TLDHIEIFITPSIGISMYPDDGDDIEALLKHADAAMYLAKEQGKNNYQFFSE 547

Query: 261 IENN 264
             + 
Sbjct: 548 ELHQ 551


>gi|227112979|ref|ZP_03826635.1| hypothetical protein PcarbP_08458 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 490

 Score =  208 bits (530), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 71/199 (35%), Positives = 103/199 (51%), Gaps = 14/199 (7%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI---SS 121
           L++NL +      + L L +++      +     R+ Q++  D L+GL+N  AF      
Sbjct: 296 LLKNLGISTFVSVLFLFLLWLT------IGGYQRRLEQMATTDKLTGLMNRQAFDYLFRR 349

Query: 122 LGS----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
           LG+     ++ LSI+  DID+FK+IND +GH VGD V+  +S  L     +     R GG
Sbjct: 350 LGTKNALQHKSLSIILIDIDHFKKINDKYGHNVGDLVLKEISAILSANTRSSDQSCRWGG 409

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EEF           A   A  LR+ IE + I    G  I +T S G+AE    E ++T+I
Sbjct: 410 EEFVILLDDCDINAAQQRAEALRQSIEITHIPYREGI-IQVTASCGVAEYRAGETLNTLI 468

Query: 238 YRADQALYVAKKSGRNRVV 256
            RAD ALY AK+ GRN+VV
Sbjct: 469 NRADIALYQAKQQGRNQVV 487


>gi|46202515|ref|ZP_00053091.2| COG5001: Predicted signal transduction protein containing a
           membrane domain, an EAL and a GGDEF domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 778

 Score =  208 bits (530), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 11/186 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQI 142
           + +   +  ++   +  D L+GL N                    ++ ++F D+D FK +
Sbjct: 337 ITQRKETEQQLVHQATHDTLTGLPNRLLLEDRVHHAIEVAKREGRRIGLMFLDLDRFKIV 396

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRK 201
           ND+ GH  GD+++  ++D+L         V RLGG+EF        S  E A +A  +  
Sbjct: 397 NDSLGHVAGDQLLKVVADRLRHTLRRSDTVARLGGDEFVVVLTHFQSSSELAEVAEKIST 456

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            ++  +    SG  +H+  S GIA      +  ++++  AD A+Y AK+ GRN    +  
Sbjct: 457 ALD--EPVELSGHKVHVGASIGIALFPEDGDDFNSLMKDADTAMYRAKQKGRNTFCFYDS 514

Query: 261 IENNTC 266
             N+  
Sbjct: 515 NMNDEA 520


>gi|330830443|ref|YP_004393395.1| PAS:GGDEF domain-containing protein [Aeromonas veronii B565]
 gi|328805579|gb|AEB50778.1| PAS:GGDEF domain protein [Aeromonas veronii B565]
          Length = 804

 Score =  208 bits (530), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 9/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQI 142
             + E       + +L+  D L+GL N       L    E      L+++F D+D+FK I
Sbjct: 481 RDITERAAREEMMRRLAFYDPLTGLPNRRLLQQRLKELMEQETPRPLALMFIDLDHFKPI 540

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH  GD ++  +++++         V RLGG+EF      S   E   +A+ L + 
Sbjct: 541 NDTFGHETGDILLNMVAERMSHCVRKQDLVARLGGDEFVILLPDSG-DEVLAVADKLHQQ 599

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +         G  + I+ S G+A    H E   T+++ ADQA+Y AK  GR RV  +++
Sbjct: 600 LR--HPFQLEGQELLISSSIGLALYPEHGEDAKTLMHHADQAMYQAKNRGRGRVCLYTE 656


>gi|160873406|ref|YP_001552722.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160858928|gb|ABX47462.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|315265635|gb|ADT92488.1| diguanylate cyclase [Shewanella baltica OS678]
          Length = 486

 Score =  208 bits (530), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 99/191 (51%), Gaps = 11/191 (5%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------N 126
           +S+ ++L + +IS      L     ++  ++  D L+G  N   F               
Sbjct: 297 LSLMVTLGILFISNMT---LGRYQRKLEVMASTDKLTGAANRQVFDEYFRQALDKAKLAQ 353

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             +SI+  DID+FK++ND++GH +GD V+  +++ L         + R GGEEF     G
Sbjct: 354 SPISILLLDIDHFKKVNDSYGHGIGDLVLKTMTNMLRGALQQEDILCRWGGEEFLILLPG 413

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
                AA LA  +R++I   +I + +G  I IT S G+AE   +EP   +I RAD ALY 
Sbjct: 414 MDLTRAAELAEQIRELIFQREIKV-NGLHISITASIGVAEHQAQEPAEDLIKRADLALYQ 472

Query: 247 AKKSGRNRVVC 257
           AK++GRN+VV 
Sbjct: 473 AKEAGRNQVVL 483


>gi|94268695|ref|ZP_01291258.1| PAS:GGDEF:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|94270596|ref|ZP_01291777.1| PAS:GGDEF:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|93450745|gb|EAT01809.1| PAS:GGDEF:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|93451500|gb|EAT02327.1| PAS:GGDEF:Response regulator receiver [delta proteobacterium
           MLMS-1]
          Length = 469

 Score =  208 bits (530), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 67/216 (31%), Positives = 98/216 (45%), Gaps = 19/216 (8%)

Query: 48  IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE--LFISYNRISQLSR 105
           IF +++  TPF G    L          + I   +  I+  +L E  L  S  R  +LS 
Sbjct: 260 IFHYHVLATPFKGPAGDL----------LGIVEHITDITSRVLAEQALQKSEQRYKELSI 309

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+GL N   F       +     Y   LS++  DID FK  ND +GHP GD+V++ L
Sbjct: 310 VDELTGLFNKRYFNKHLRLEVERARRYQHPLSLLIMDIDNFKHYNDTYGHPAGDRVLSAL 369

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
              L           R GGEEF      +  +    LA  LR+     +     G  I  
Sbjct: 370 GGMLRDSMRLNDLACRFGGEEFVVILPMTDGETGLKLAERLRERFAALEFQPLEGVVIRK 429

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           T+S G+A+   +E   +++ RAD+ LY AK +GR+R
Sbjct: 430 TMSVGVAQFEDEESPESLLARADKNLYAAKAAGRDR 465


>gi|251794416|ref|YP_003009147.1| diguanylate cyclase [Paenibacillus sp. JDR-2]
 gi|247542042|gb|ACS99060.1| diguanylate cyclase [Paenibacillus sp. JDR-2]
          Length = 533

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 88/176 (50%), Gaps = 8/176 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF--ISSL-GSYNEKLSIVFFDIDYFKQINDNFGH 148
           +L      +   +  D L+GL N      I++L        S++  D+D+FK +ND  GH
Sbjct: 358 KLRAQKEELHAEANTDALTGLTNRRTMGAITALWKQQGTPFSVIIMDLDHFKNVNDRHGH 417

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+V+ F++  +V   G   +  R GGEEF      ++E EA  +A  +R  IE S  
Sbjct: 418 QMGDEVLKFVAGIMVSERGPDDYCCRFGGEEFTMLLPHATEAEAVQVAERIRLRIEQSVT 477

Query: 209 NISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            I       +T+S G+A      E +  +   ADQALY AK+ GRNR V +S + N
Sbjct: 478 PIGE----SVTMSLGVATFPDAAEEVVELFKYADQALYQAKRDGRNRTVAYSSLMN 529


>gi|71906691|ref|YP_284278.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71846312|gb|AAZ45808.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 585

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 15/220 (6%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSI-----LKELFISYNRISQLSRIDCLSGLL 113
           Y L  +  +  +L I+ +    ++G +  S+     +     +  RI +L+  D L+GL 
Sbjct: 106 YELTGLRKDGSTLPIMVLGSPSVIGGLPASVGTVLDISAQKAAEQRIRELADYDVLTGLP 165

Query: 114 NHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N                    +++++F D+D+FK++ND+ GH VGD+++  ++ +L  V 
Sbjct: 166 NRRLLRERFEQLLAAAEREKSEIAVIFLDLDHFKRVNDSLGHSVGDELLCEVARRLDSVV 225

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                + RLGG+EF  A  G     A  +A  L ++   S+    +G  + +T S GI+ 
Sbjct: 226 RRIDTLARLGGDEFIFAMPGFHTAAAVEVARRLVEVF--SRPFEVAGHELTVTPSLGISI 283

Query: 227 RCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             H    + T++  AD A+Y AK+ GRN    +S   N T
Sbjct: 284 YPHDGRDLETLLRNADTAMYRAKEMGRNAFQFYSSEMNTT 323


>gi|126172532|ref|YP_001048681.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|304411775|ref|ZP_07393387.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|307306173|ref|ZP_07585918.1| diguanylate cyclase [Shewanella baltica BA175]
 gi|125995737|gb|ABN59812.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|304349963|gb|EFM14369.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|306911046|gb|EFN41473.1| diguanylate cyclase [Shewanella baltica BA175]
          Length = 486

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 99/191 (51%), Gaps = 11/191 (5%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------N 126
           +S+ ++L + +IS      L     ++  ++  D L+G  N   F               
Sbjct: 297 LSLMVTLGILFISNMT---LGRYQRKLEVMASTDKLTGAANRQVFDEYFRQALDKAKLAQ 353

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             +SI+  DID+FK++ND++GH +GD V+  +++ L         + R GGEEF     G
Sbjct: 354 SPISILLLDIDHFKKVNDSYGHGIGDLVLKTMTNMLRGALQQQDILCRWGGEEFLILLPG 413

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
                AA LA  +R++I   +I + +G  I IT S G+AE   +EP   +I RAD ALY 
Sbjct: 414 MDLTRAAELAEQIRELIFQREIKV-NGLHISITASIGVAEHQAQEPAEDLIKRADLALYQ 472

Query: 247 AKKSGRNRVVC 257
           AK++GRN+VV 
Sbjct: 473 AKEAGRNQVVL 483


>gi|256829253|ref|YP_003157981.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
 gi|256578429|gb|ACU89565.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
          Length = 339

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 10/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
              +EL  + +R+S+LS  D L+G+ N   F ++L     +       L+++  DID+FK
Sbjct: 154 QRTRELEEANHRLSELSLTDGLTGIANRRRFDAALAEEWSRSARTGSTLALIMLDIDHFK 213

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           + ND++GH  GD  +  +++ L          V R GGEEF      ++   A  +A  L
Sbjct: 214 KYNDHYGHQQGDDCLRRVAEVLRSSARRQGDLVSRYGGEEFCMILPDTALPGAFEIAERL 273

Query: 200 RKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R+ +EN  +         +T S G+A    C     + ++ RAD++LY AK  GRN V 
Sbjct: 274 RREVENMDMPHVLSDVGRVTASMGVAASMPCKAMSPAELLRRADESLYQAKSEGRNCVR 332


>gi|302391652|ref|YP_003827472.1| diguanylate cyclase [Acetohalobium arabaticum DSM 5501]
 gi|302203729|gb|ADL12407.1| diguanylate cyclase [Acetohalobium arabaticum DSM 5501]
          Length = 294

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 62/175 (35%), Positives = 90/175 (51%), Gaps = 10/175 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           K+L  + + I +LS+ D L+GL N   F++ L         Y++ LS+V  D+D FK IN
Sbjct: 118 KKLQQAKDEIEKLSKTDELTGLANRRHFMNYLQKIFSQAQRYSQSLSLVMIDLDKFKNIN 177

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GDKV++ L D L           R+GGEEF      +   +A   A  +RK I
Sbjct: 178 DTYGHDAGDKVLSALGDLLNNETRNEDLAARIGGEEFIVILTQTDLNDARNYAERIRKKI 237

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
               I       + IT S G+A   + +   +I  RAD+ALY AK SGR++V  +
Sbjct: 238 SKLNI---ESIPVKITASLGVATMKNNDDYESIFNRADEALYKAKNSGRDKVCKY 289


>gi|120553039|ref|YP_957390.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei
           VT8]
 gi|120322888|gb|ABM17203.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei
           VT8]
          Length = 407

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 87/177 (49%), Gaps = 8/177 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            + +     N +  L+  D L+G+LN           +     YN  L++++ D D+FK+
Sbjct: 219 DISDRKQLENELEALATRDSLTGVLNRRECSRVLIEELERARRYNRPLALLWIDFDHFKE 278

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH  GD V+  +S  L     +   +GR GGEEF          EA   A  LR+
Sbjct: 279 INDTWGHAAGDSVLCSISSLLEDSVRSVDTLGRFGGEEFVLILPEMDVAEAEETAERLRQ 338

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + N  + + SG +I +TIS G+A    H + +  +   AD+A+Y AKK GRN +  
Sbjct: 339 RVCNQPVALESGHNIRLTISIGVAVFPDHGDTLDALCAAADKAMYRAKKQGRNCIAM 395


>gi|313682174|ref|YP_004059912.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
 gi|313155034|gb|ADR33712.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
          Length = 1056

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 86/185 (46%), Gaps = 10/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQ 141
            + E   +  R+  L+  D L+GL N        + FI+    ++ + +++F D+D+FK 
Sbjct: 611 DITEKKRTEERVHYLANYDLLTGLPNRVQLIERITYFINVAKRHDGEFAVMFLDLDHFKD 670

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH +GD ++  L+ ++         V RLGG+EF      +S    A +   L +
Sbjct: 671 INDMLGHSIGDILLIELAKRIQSTIREEDTVSRLGGDEFIFILPSTSVHGVANVVEKLLE 730

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            I     +I     I +T S GIA          T++  AD A+Y AK++GRN    F+ 
Sbjct: 731 TI-TKPFSIEQNELI-VTASIGIAIYPIDGTDPETLLKNADTAMYQAKQNGRNNYRFFTK 788

Query: 261 IENNT 265
               T
Sbjct: 789 AMQET 793


>gi|295798123|emb|CAX68956.1| two component sensor with CHASE2 and GGDEF domain [uncultured
           bacterium]
          Length = 559

 Score =  207 bits (529), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 73/284 (25%), Positives = 128/284 (45%), Gaps = 24/284 (8%)

Query: 5   LKDFLSIWLCHEKNLESFSPHT--FMIYFSIFFSIFIATVIFIANIFLFYIGLTP--FYG 60
           + +  ++          F P +  F+I F  FF I    ++  A   +  + L     +G
Sbjct: 261 MVNANTLLTVLTGKTFQFVPFSIRFLISFMGFFIILSLALLVSAMFGVLTVILLAIILFG 320

Query: 61  LEYILVENLSLVIISIT-ISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHSA 117
           + + L +   +  I++  I L+L  I   I +E  LF+   R+ + S  D L+G  +   
Sbjct: 321 ISFYLFQQQLIFDITLMYIGLVLTLIGAVIYREGQLFLENLRLREESSRDPLTGFYSRRF 380

Query: 118 FISSLGSY----------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
               L S            +++S++  D+D FK +ND+FGH  GD+V+  ++  +     
Sbjct: 381 MELKLKSEVGRLSRGFHSAKEVSVIMIDLDNFKLVNDSFGHAEGDRVLKTMAQSIRNSVR 440

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ----INISSGPSIHITISAG 223
               + R GG+EF      +  ++A   A  LR++I N+            +I +T S G
Sbjct: 441 KEEVICRFGGDEFCVILPNTELKDATRFAEKLRQLIANNPDLSYRTAGGTDTIRVTGSIG 500

Query: 224 IAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           +A     + +    ++  ADQALY AKK GRNRV  + D + +T
Sbjct: 501 VASVSGTKAMEPGGLLKAADQALYRAKKGGRNRVCVY-DPKQDT 543


>gi|162149402|ref|YP_001603863.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787979|emb|CAP57583.1| putative signalling protein, GGDEF family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 464

 Score =  207 bits (529), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 63/192 (32%), Positives = 94/192 (48%), Gaps = 11/192 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVF 133
           L Y     +         +  L+R+D L+GL N  AF   +    + L        +++ 
Sbjct: 273 LWYGLVVDVTARRRMEQELHALARVDHLTGLPNRRAFTEGMERAWQMLRGGVSRGGAVLM 332

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID FK IND +GH  GD V+  ++  L+       F GR+GGEEFAA    +   EA 
Sbjct: 333 IDIDRFKTINDRYGHAAGDAVLRHVATVLMATLRATDFTGRMGGEEFAACLPDTGLDEAG 392

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252
            +A  LR+ I  + +   S  SI +T+S GI+  R         + RAD ALY AK++GR
Sbjct: 393 RIAERLRQAIAGTPVPFES-HSIALTVSIGISKMRLADAGGDDALSRADMALYSAKENGR 451

Query: 253 NRVVCFS-DIEN 263
           +RV   + ++E 
Sbjct: 452 DRVAFATLEVER 463


>gi|117922460|ref|YP_871652.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella sp. ANA-3]
 gi|117614792|gb|ABK50246.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella sp. ANA-3]
          Length = 1228

 Score =  207 bits (529), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 97/206 (47%), Gaps = 11/206 (5%)

Query: 67  ENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS- 124
           + L + I+      +  YI S + + E  ++  RI  L+  D L+ L N  +  S L   
Sbjct: 765 KWLMMSIVRDETGAISHYIGSFTDISERKVNEERIHFLAHHDSLTLLPNRLSLQSRLEKV 824

Query: 125 ------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                    +++++F D+D+FK IND  GH VGD ++  ++ +L  + G    V RLGG+
Sbjct: 825 FQEAFISQTQIAVMFIDMDHFKNINDTLGHHVGDMLLLEVARRLKNIMGNDDIVARLGGD 884

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTII 237
           EF      +     A +A  LR  +  +Q  +     +H + S GI+      + +  ++
Sbjct: 885 EFVVVLSDTDHDRVAKVAEALRSGL--NQTYLIDNKPLHSSPSIGISLFPTDGDSVEALM 942

Query: 238 YRADQALYVAKKSGRNRVVCFSDIEN 263
             AD A+Y AK +GRN    F+   N
Sbjct: 943 KNADMAMYRAKAAGRNNYQFFTAAMN 968


>gi|46198710|ref|YP_004377.1| hypothetical protein TTC0402 [Thermus thermophilus HB27]
 gi|46196333|gb|AAS80750.1| hypothetical conserved protein [Thermus thermophilus HB27]
          Length = 367

 Score =  207 bits (529), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 108/252 (42%), Gaps = 27/252 (10%)

Query: 19  LESFSPHTFMIYF------SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV 72
           L  + P  +++        S +      T++    + +       F  L Y+    L  V
Sbjct: 126 LGPWVPAIYVLAAFAHPLGSAWRLSLGWTLVLYGILAIGLWDRDGFRMLGYVATAFLGQV 185

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSY 125
            ++  I LL  +      +E++       + +  D L+ L N  AF       +S    Y
Sbjct: 186 TVAALILLLARF------REMYGQTRFWREQALTDTLTRLPNRRAFELALTRELSRAERY 239

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
               S+V  D+D FKQIND  GH  GD+V+  ++  LV        V R GGEEFA    
Sbjct: 240 GTPFSLVLVDLDRFKQINDTLGHDHGDEVLRRVARFLVEGVRREDVVARWGGEEFALLLP 299

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            +   +A  LA  LR+ +E+          + +T S G+AE    E    +  RADQALY
Sbjct: 300 STRASDALRLAERLRQALEDL--------DLGVTASFGVAEYLPGESEEALFRRADQALY 351

Query: 246 VAKKSGRNRVVC 257
            AK+ GRNRV  
Sbjct: 352 RAKERGRNRVEF 363


>gi|85712056|ref|ZP_01043109.1| Phytochrome sensor diguanylate cyclase/phosphodiesterase
           [Idiomarina baltica OS145]
 gi|85694046|gb|EAQ31991.1| Phytochrome sensor diguanylate cyclase/phosphodiesterase
           [Idiomarina baltica OS145]
          Length = 689

 Score =  207 bits (529), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 11/182 (6%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFD 135
            Y    + +EL  +  R+  L   D L+ + N      +L         +   L+++  D
Sbjct: 508 AYQIEQLNQELTEANQRLEHLVHTDALTQVWNRYHMEQTLEEEVKRCKRHGRDLAVILLD 567

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK++ND++GH VGDKV+  +S+ +     +    GR GGEEF   A  +  + A  L
Sbjct: 568 IDHFKRVNDDYGHDVGDKVLKLISEAIHQWLRSSDVFGRWGGEEFLIIAPETDLESANQL 627

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A  LR+ + N Q +        +T S G+AE    E  ++++ RAD ALY  K+SGRN V
Sbjct: 628 AERLRRRLSNLQFDKVG----QVTASFGVAELLPSEDRNSLVKRADNALYQVKESGRNSV 683

Query: 256 VC 257
             
Sbjct: 684 EV 685


>gi|312110709|ref|YP_003989025.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y4.1MC1]
 gi|311215810|gb|ADP74414.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y4.1MC1]
          Length = 574

 Score =  207 bits (529), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 104/211 (49%), Gaps = 12/211 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           + +E L++  +      +  Y++  S + E   +  ++++L+  D L+ + N   F   L
Sbjct: 100 LYLEWLTISAVKDQQGNVTNYVAIFSDITEHKRNMEQLTKLALYDPLTNVPNRYLFEKRL 159

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            S       +N+  +++F D+D FK IND  GH +GD ++   + +L  +      + R 
Sbjct: 160 ESIIRMSKKHNQSFALLFLDLDRFKNINDTLGHHMGDMLLKETAQRLNGMLRKQDTIARF 219

Query: 176 GGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF          +EA  +A ++ + ++    N+ +   ++I+ S GI+         
Sbjct: 220 GGDEFVIILPNLKHIREAVYMAENIIESLKR-PFNV-NHQEVYISTSIGISVYPYDGTDK 277

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            T+I  AD+A+Y AK +GRN+ V + D  NN
Sbjct: 278 ETLIRMADRAMYQAKTNGRNQFVLYHDGMNN 308


>gi|94263584|ref|ZP_01287394.1| PAS:GGDEF:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|93456004|gb|EAT06155.1| PAS:GGDEF:Response regulator receiver [delta proteobacterium
           MLMS-1]
          Length = 469

 Score =  207 bits (529), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 99/219 (45%), Gaps = 19/219 (8%)

Query: 48  IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE--LFISYNRISQLSR 105
           IF +++  TPF G    L          I I   +  I+  +L E  L  S  R  +LS 
Sbjct: 260 IFHYHVLATPFKGPAGDL----------IGIVEHITDITSRVLAEQALQKSEQRYKELSI 309

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+GL N   F       +     Y   LS++  DID FK  ND +GHP GD+V++ L
Sbjct: 310 VDELTGLFNKRYFNKHLRLEVERARRYQHPLSLLIMDIDNFKHYNDTYGHPAGDRVLSAL 369

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
              L           R GGEEF      +  +    LA  LR+     +     G  I  
Sbjct: 370 GGMLRDSMRLNDLACRFGGEEFVVILPMTDGETGLKLAERLRERFAALEFQPLEGVVIRK 429

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           T+S G+A+   +E   +++ RAD+ LY AK +GR+R + 
Sbjct: 430 TMSVGVAQFDCEENPESLLARADKNLYAAKAAGRDRSIF 468


>gi|295400041|ref|ZP_06810021.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294977820|gb|EFG53418.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 574

 Score =  207 bits (529), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 104/211 (49%), Gaps = 12/211 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           + +E L++  +      +  Y++  S + E   +  ++++L+  D L+ + N   F   L
Sbjct: 100 LYLEWLTISAVKDQRGNVTNYVAIFSDITEHKRNMEQLTKLALYDPLTNVPNRYLFEKRL 159

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            S       +N+  +++F D+D FK IND  GH +GD ++   + +L  +      + R 
Sbjct: 160 ESIIRMSKKHNQSFALLFLDLDRFKNINDTLGHHMGDMLLKETAQRLNGMLRKQDTIARF 219

Query: 176 GGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF          +EA  +A ++ + ++    N+ +   ++I+ S GI+         
Sbjct: 220 GGDEFVIILPNLKHIREAVYMAENIIESLKR-PFNV-NHQEVYISTSIGISVYPYDGTDK 277

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            T+I  AD+A+Y AK +GRN+ V + D  NN
Sbjct: 278 ETLIRMADRAMYQAKTNGRNQFVLYHDGMNN 308


>gi|311695269|gb|ADP98142.1| sensory box/GGDEF family protein [marine bacterium HP15]
          Length = 317

 Score =  207 bits (529), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 70/217 (32%), Positives = 105/217 (48%), Gaps = 17/217 (7%)

Query: 57  PFYGLEYILVENLSLVIISIT------ISLLLGYIS--GSILKELFISYNRISQLSRIDC 108
           P  G E  + +NL++  +S T      + L++  ++   S    L  +  ++++LS  D 
Sbjct: 101 PITGTEEYMFQNLTISPLSGTTGEVNKVCLMVYDVTDIASSKMALERANEQLAKLSMTDR 160

Query: 109 LSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GLLN   +             Y    S+V FDID+FK +ND  GH  GD+VI   +  
Sbjct: 161 LTGLLNRGTWENLVDAEFERFRRYGHTTSLVMFDIDHFKPVNDTHGHLAGDEVIKHTASL 220

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                      GR GGEEF      +  + A I+   +R+ IE S +  S  P I  T+S
Sbjct: 221 TRNAIRQSDSAGRYGGEEFGIILPETDAEGARIICERIRESIEQSVVETSVAP-IRYTVS 279

Query: 222 AGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
            GIA+   + E     + +AD+ALY AK+ GRNRVV 
Sbjct: 280 IGIAQLTEEPENYMQWMQKADEALYAAKEGGRNRVVV 316


>gi|302186039|ref|ZP_07262712.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 418

 Score =  207 bits (529), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 62/185 (33%), Positives = 92/185 (49%), Gaps = 12/185 (6%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           +  Y+S    +        ++ +++  D L+GL N  +    L           +  S++
Sbjct: 237 ITHYVSISQDVTTRLGREQKLLEIAHSDPLTGLDNRRSAEHMLERQIPAVSMSGKPFSLI 296

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK +ND +GHP GD VI  ++  L           R GGEEF      SS ++A
Sbjct: 297 ICDIDHFKAVNDRYGHPAGDSVITSVAAILKQRIRLMDIAARWGGEEFLILVPDSSLRQA 356

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           A LA  +R  +EN  I      +  +TIS G+AE    E  +++I RAD+ALY AK+ GR
Sbjct: 357 AELAERIRNSVENLVIP----ETGSVTISLGVAELSAGETAASLIQRADKALYQAKRLGR 412

Query: 253 NRVVC 257
           NRV C
Sbjct: 413 NRVEC 417


>gi|288923298|ref|ZP_06417434.1| diguanylate cyclase [Frankia sp. EUN1f]
 gi|288345358|gb|EFC79751.1| diguanylate cyclase [Frankia sp. EUN1f]
          Length = 431

 Score =  207 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 16/208 (7%)

Query: 66  VENLSLVIISITISLLLGYISGSILK-------ELFISYNRISQLSRIDCLSGLLNHSAF 118
           +E + L+   + +SL    + GS+ +       EL  +  R+ QLS  D L+GL N    
Sbjct: 206 LEGIILIAGQLAVSLDNARVYGSLERKVAERTEELAAANRRLEQLSVTDPLTGLANRRHL 265

Query: 119 IS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                        +   L++   DID FK  ND+FGH  GD+ +  ++  L         
Sbjct: 266 DEVLDIEWHRAQRHTTPLALAMIDIDRFKSYNDHFGHAAGDRCLQRVAACLAAGTRDTDL 325

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCH 229
             R GGEEFA    G+   +A+ +A+ LR  +           +  +T+S G+A      
Sbjct: 326 TARYGGEEFAVVMPGADTGDASRIAHRLRSAVAELTEPHPVTTNQVVTVSIGVASIAPTP 385

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVC 257
            E    ++  AD ALY AK  GRN+V  
Sbjct: 386 TEEAKALVELADSALYRAKSGGRNQVEV 413


>gi|313683084|ref|YP_004060822.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM
           16994]
 gi|313155944|gb|ADR34622.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM
           16994]
          Length = 551

 Score =  207 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 11/174 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           +++         +L+  D L+GL N       L         Y+  LSI+  D+D+FK +
Sbjct: 381 IRQDITDKKHAEELAITDRLTGLYNRLKLDEVLNYEIAQTSRYDTPLSIIIIDVDHFKNV 440

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD V+  ++  L          GR GGEEF      ++   A   A  +R  
Sbjct: 441 NDTYGHQTGDMVLKEVAQILRSCSRKSDTSGRWGGEEFLIILPNTNLTGALEAAEKIRTA 500

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           IEN   ++        T S G++E    E   + I RADQALY AK  GRN+VV
Sbjct: 501 IENYPFSVVGQK----TASLGVSEFLANENEDSFIERADQALYRAKSGGRNQVV 550


>gi|78224277|ref|YP_386024.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter metallireducens GS-15]
 gi|78195532|gb|ABB33299.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter metallireducens GS-15]
          Length = 905

 Score =  207 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 12/185 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFK 140
            + E      ++   +  D L+GL N +     LG             + ++F D+D FK
Sbjct: 445 DITEHRRYEEQLVYQATHDPLTGLPNRNLLQDRLGQALALEAFRRRNPICVMFLDLDNFK 504

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
           ++ND  GH VGD ++  ++++L         V RLGG+E+        E  +   +A  +
Sbjct: 505 KVNDTLGHTVGDMLLKAVANRLKNCLRGGDTVARLGGDEYIIVLPNVREVPDVITVAKKM 564

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +     + +  G  I++T S GIA      E +  ++  AD A+Y AK+ G+N    +
Sbjct: 565 INVFAAPLLLM--GNEIYVTASIGIALFPTDGETVDALLKNADAAMYHAKEQGKNNYQFY 622

Query: 259 SDIEN 263
           S   N
Sbjct: 623 SAEMN 627


>gi|307826353|ref|ZP_07656557.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307732594|gb|EFO03467.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 1020

 Score =  207 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 93/207 (44%), Gaps = 11/207 (5%)

Query: 64  ILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +  E L++  ++     +  Y+ S S + E   +   I  L+  D L+ L N    +  L
Sbjct: 541 VYPEWLNITAVTDEGGQVTNYVASFSDITERKTAEYEIQHLAFHDSLTQLPNRRLLLERL 600

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                      ++L+++  D+D FK +ND+FGH  GD+++  ++ ++         V RL
Sbjct: 601 KHGIEVERREGKQLALLMLDLDRFKAVNDSFGHQAGDELLQQVARRITSRLREVDMVARL 660

Query: 176 GGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF       +   +AA +A  +   +  S   +     + I +S GI+    H    
Sbjct: 661 GGDEFIVLLEDITHPDDAARVAEGIIADLSKS-FQLPQSDDVQIGVSIGISLYPQHAVNP 719

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSD 260
             ++  AD ALY AK +GR     FS+
Sbjct: 720 EMLLDYADTALYHAKDNGRGCFAYFSE 746


>gi|330809202|ref|YP_004353664.1| diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377310|gb|AEA68660.1| putative diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 317

 Score =  207 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 70/219 (31%), Positives = 110/219 (50%), Gaps = 17/219 (7%)

Query: 57  PFYGLEYILVENLSLVIISIT------ISLLLGYIS--GSILKELFISYNRISQLSRIDC 108
           P  G E  + +N +L+ +         I L++  ++   +   +L  +  ++ +LS  D 
Sbjct: 100 PITGQEAFMYQNTTLLPLRSPDNTIKHICLVIYDVTDVATNRHQLQAANAQLQKLSSTDR 159

Query: 109 LSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GL N   + ++L         Y   LS+V  DID+FK++ND +GH  GDKVI  ++  
Sbjct: 160 LTGLYNRGHWEANLKAAYARHQRYGHALSLVMLDIDHFKRVNDTYGHQAGDKVIEHVAGL 219

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L          GR GGEEF      + +  A I A  LRK +E  +++ +   +I  TIS
Sbjct: 220 LREHVRDADVAGRYGGEEFGVVLSDTDKAGAQIFAERLRKAVETLEVHYND-QAIRFTIS 278

Query: 222 AGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            G+A+        + +I RAD+ALY +KKSGRNRV    
Sbjct: 279 LGVADLSQPSNDHADLIARADEALYTSKKSGRNRVTVHE 317


>gi|317402690|gb|EFV83243.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(S) [Achromobacter xylosoxidans C54]
          Length = 858

 Score =  207 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 105/222 (47%), Gaps = 16/222 (7%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112
           IG   FY  E  L ++    ++ + + L       ++  E   +  RI QL+  D L+GL
Sbjct: 388 IGTFGFYFRERRLPDDFHHRLVDVCVYLC------ALALEREEARARIRQLAFYDELTGL 441

Query: 113 LNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N +  ++             ++++++F D+D FKQ+ND  GHP+GD ++  ++ +L  +
Sbjct: 442 PNRNLLLAQAEQAIARAEPERKRVAVLFLDLDRFKQVNDTLGHPIGDALLRDIAQRLRRL 501

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                 VGRL G+EF               A  +  ++  S   ++ G +++ ++S GI+
Sbjct: 502 ARATDIVGRLSGDEFVMLMPDFEHGRLTAAAEHI--LVSLSHPFVAGGITLNPSVSIGIS 559

Query: 226 ERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
                   + T++  AD A+Y AK +GRNR+  FS   N   
Sbjct: 560 VFPENGRDMDTLLRHADMAMYQAKTAGRNRISFFSAEMNRQA 601


>gi|218782319|ref|YP_002433637.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218763703|gb|ACL06169.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 301

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 95/179 (53%), Gaps = 10/179 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           + + L  +  ++ +L+  D L+GL NH  F             Y+E LS V  DID+FK+
Sbjct: 124 LYESLQETNRQLQELANRDGLTGLYNHRYFQDAMTKDFQRAMRYHESLSCVLCDIDFFKK 183

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            ND +GH  GD V++ L+  +           R GGEEFA     +    A ++A  LR+
Sbjct: 184 FNDTYGHQTGDIVLSTLARIVEDSLRDTDLAARYGGEEFALVLYHTPAAAAFMVAERLRE 243

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCF 258
            +E  +  I++  S+ +TIS G+A   H +     T+I  AD+ALY AK++GRN+V+ F
Sbjct: 244 SVEQHEF-IANDLSLSVTISVGVATYPHPDIPDHKTLIECADKALYKAKENGRNQVISF 301


>gi|89902139|ref|YP_524610.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Rhodoferax ferrireducens T118]
 gi|89346876|gb|ABD71079.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 860

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDID 137
           +    + E   +   I +L+  D L+ L N           +S      E L+++F D+D
Sbjct: 416 VISREITERKQAEKDIQKLAYFDALTSLPNRSLLNDRIRHALSEADRRQESLALMFLDLD 475

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK IND  GH VGD+++  L+ ++  V      V RLGG+EF      +  + AA +A 
Sbjct: 476 HFKNINDTLGHGVGDQLLVALAARMQSVVREQDTVARLGGDEFILLLPDTGSKGAARVAQ 535

Query: 198 DLRKIIENSQINISSGP-SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
            L + I    + +  GP  + +T S GIA+     + + T+  RAD A+Y AK+SGRN  
Sbjct: 536 KLLQTIS---LPVQIGPHELTVTPSMGIAQYPRDGDDLETLSRRADIAMYRAKQSGRNGY 592

Query: 256 VCFSDIENNT 265
             ++     T
Sbjct: 593 QFYTTEMQLT 602


>gi|83312428|ref|YP_422692.1| hypothetical protein amb3329 [Magnetospirillum magneticum AMB-1]
 gi|82947269|dbj|BAE52133.1| Hypothetical 1041 kDa protein in hypE 3'region [Magnetospirillum
            magneticum AMB-1]
          Length = 1510

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 94/191 (49%), Gaps = 11/191 (5%)

Query: 81   LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132
            ++ Y++  S +  +  S  RI  L+  D L+G+ N S  +  L            KL+++
Sbjct: 1052 VVNYVAIFSDISAIKSSQRRIEFLATHDELTGIPNRSLLMDRLKHAVAQAKRQKTKLAVL 1111

Query: 133  FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            F D+D FK IND+ GH VGD+++   +++L         + RLGG+EF A     S ++ 
Sbjct: 1112 FIDLDNFKVINDSLGHDVGDQLLKQATERLKHCVRDSDTLARLGGDEFVAVLTDVSLEKV 1171

Query: 193  AILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSG 251
              +A  +   +  S     +  S+ ++ S GI+      +   T++  AD A+Y AK+ G
Sbjct: 1172 NSVAARIVDFLGAS--FSINDKSLFVSASIGISVFPDDGQDSLTLLKHADTAMYRAKERG 1229

Query: 252  RNRVVCFSDIE 262
            RN+   F+D  
Sbjct: 1230 RNQYQFFADEM 1240


>gi|257095583|ref|YP_003169224.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Candidatus Accumulibacter phosphatis clade IIA str.
            UW-1]
 gi|257048107|gb|ACV37295.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Candidatus Accumulibacter phosphatis clade IIA str.
            UW-1]
          Length = 1399

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 12/191 (6%)

Query: 86   SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---------YNEKLSIVFFDI 136
            S   + E   +  +IS L+  D L+ L N S     L           +   ++++F D+
Sbjct: 953  SFVDISERKAAEEKISHLAHFDTLTDLPNRSNLQGRLDQALASARREGHGRSVAVMFLDL 1012

Query: 137  DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
            D FK IND  GH VGD ++  ++ +L         V RLGG+EF     G+    A  +A
Sbjct: 1013 DRFKNINDTLGHHVGDALLLEVAARLRSSVRDSDVVARLGGDEFVVVLTGADALAAERVA 1072

Query: 197  NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
              + K +  +      G ++H T S GIA      E +  ++  AD A+Y AK +GRN V
Sbjct: 1073 GKILKALSRA--YQIEGHALHSTSSIGIAVFPADGESVEVLMQNADAAMYHAKSAGRNNV 1130

Query: 256  VCFSDIENNTC 266
              F+   N   
Sbjct: 1131 QFFTASMNEAA 1141


>gi|256828284|ref|YP_003157012.1| PAS/PAC sensor-containing diguanylate cyclase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577460|gb|ACU88596.1| diguanylate cyclase with PAS/PAC sensor [Desulfomicrobium baculatum
           DSM 4028]
          Length = 572

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 91/185 (49%), Gaps = 8/185 (4%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSI 131
           S+   + + + + E  ++  R+ +L+  D L+GL N   F+            + + L +
Sbjct: 380 SMFRLHGAMADVTERRLAELRLERLANTDELTGLPNRRHFLECVRAEMTRSRRFGKSLCV 439

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              DID FK++ND  GH VGD  +  ++  +  +      VGRLGGEEF      +    
Sbjct: 440 AMVDIDDFKKVNDTHGHGVGDLALRHVAQTINGLRRAVDVVGRLGGEEFCVLFPEAGLAA 499

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
               A  +RK +  + +       + +T+S G+AE    E +  ++ R+D+ALY AK++G
Sbjct: 500 GITAAERVRKALAEAVLEHGD-LRLRLTVSIGLAEYSGDESLDGLLRRSDEALYEAKRTG 558

Query: 252 RNRVV 256
           +NRV 
Sbjct: 559 KNRVC 563


>gi|281418855|ref|ZP_06249874.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum JW20]
 gi|281407939|gb|EFB38198.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum JW20]
          Length = 415

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 9/178 (5%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNF 146
             + +++ + +  D L+ L N       L +        N+KLS++  DID FK+IND +
Sbjct: 236 KRTLHQLRKNATTDKLTKLYNRRFLEQYLDNQLEITGFSNQKLSVIMMDIDNFKRINDTY 295

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD V+   +  ++        V R GGEEF A    S  + A  +A  +R+ I   
Sbjct: 296 GHNAGDAVLVTFARVILRCLRQTDLVARYGGEEFIAILPSSDTKNAYDIAERIRESIAAE 355

Query: 207 QINISSGPSI-HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            +   +   + +I+ S G++    H +  + +I  AD ALY AK++G+NRV+ +S+  
Sbjct: 356 PMPKINDVQLPNISCSFGVSTYPTHAKNKNDLIKAADIALYKAKQAGKNRVITYSEGM 413


>gi|149374451|ref|ZP_01892225.1| diguanylate cyclase [Marinobacter algicola DG893]
 gi|149361154|gb|EDM49604.1| diguanylate cyclase [Marinobacter algicola DG893]
          Length = 357

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 118/246 (47%), Gaps = 9/246 (3%)

Query: 18  NLESFSPHTFM-IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISI 76
            L  F P  F+ +         +A   +   ++L    + P   +    +  + L  +S+
Sbjct: 98  YLLMFIPALFVSMALRAAVICLVALWSYYIALYLMMWTIEPLQPIAPGALMAVYLFNLSV 157

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129
             ++   Y+S   L  +  +  ++ +++  D L+GL N           ++        +
Sbjct: 158 VFAMF-SYLSFFYLTMVTTANRKLRRMATTDSLTGLFNRRHMTYLAEKELARFERTGRPV 216

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           + +  D+D+FK IND  GH +GD+V+  ++  +     T   + R GGEEF AA   +S 
Sbjct: 217 AFLVLDVDHFKAINDRHGHEIGDRVLIEVAKIIEAQLRTQDLISRWGGEEFLAALPDTSL 276

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
             A   A  +RK + +     ++G +I +TISAG++E    + +++ I RAD+ALY +K+
Sbjct: 277 DSAQASAERVRKALLDHDWLATTGEAIGLTISAGVSEYRRGDTLNSAISRADRALYRSKE 336

Query: 250 SGRNRV 255
            GRNRV
Sbjct: 337 GGRNRV 342


>gi|319424657|gb|ADV52731.1| diguanylate cyclase [Shewanella putrefaciens 200]
          Length = 486

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 60/193 (31%), Positives = 97/193 (50%), Gaps = 11/193 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------ 125
           + +S+ +++ + +IS      L     ++  ++  D L+G  N   F             
Sbjct: 295 LALSLIVTMGILFISNMT---LGRYQRKLEMMASTDKLTGAANRQVFEEYFRQALDKAKL 351

Query: 126 -NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
               +SI+  DID+FK++ND++GH +GD V+  +++ L  +      + R GGEEF    
Sbjct: 352 TQSPISILLLDIDHFKKVNDSYGHGMGDLVLKTMANMLRSLLQPQDILCRWGGEEFLILL 411

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
                  AA  A  +R +I   +I + +G  I IT S G+AE   +EP   +I RAD AL
Sbjct: 412 PEMDLSRAAEFAEQIRDLISLREIKV-NGLHISITASIGVAEHQAQEPAEDLIKRADLAL 470

Query: 245 YVAKKSGRNRVVC 257
           Y AK +GRN+VV 
Sbjct: 471 YQAKAAGRNQVVL 483


>gi|125974674|ref|YP_001038584.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum ATCC
           27405]
 gi|256004128|ref|ZP_05429112.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum DSM
           2360]
 gi|125714899|gb|ABN53391.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum ATCC
           27405]
 gi|255991876|gb|EEU01974.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum DSM
           2360]
 gi|316941798|gb|ADU75832.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum DSM
           1313]
          Length = 415

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 9/178 (5%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNF 146
             + +++ + +  D L+ L N       L +        N+KLS++  DID FK+IND +
Sbjct: 236 KRTLHQLRKNATTDKLTKLYNRRFLEQYLDNQLEITGFSNQKLSVIMMDIDNFKRINDTY 295

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD V+   +  ++        V R GGEEF A    S  + A  +A  +R+ I   
Sbjct: 296 GHNAGDAVLVTFARVILRCLRQTDLVARYGGEEFIAILPSSDTKNAYDIAERIRESIAAE 355

Query: 207 QINISSGPSI-HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            +   +   + +I+ S G++    H +  + +I  AD ALY AK++G+NRV+ +S+  
Sbjct: 356 PMPKINDVQLPNISCSFGVSTYPTHAKNKNDLIKAADIALYKAKQAGKNRVITYSEGM 413


>gi|291615259|ref|YP_003525416.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans
           lithotrophicus ES-1]
 gi|291585371|gb|ADE13029.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans
           lithotrophicus ES-1]
          Length = 671

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 15/205 (7%)

Query: 67  ENLSLVIISITISLLLGY-------ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +N  L+ IS+++S ++         ++   + E       + + ++ID L+ L N   F 
Sbjct: 464 KNGQLLPISVSVSAIIREQQAAGIVVAFHDITERKKFEQELERRAQIDALTSLNNRRHFY 523

Query: 120 S-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
                       Y + L+++  D+D+FK IND +GH VGD V+  L    +        +
Sbjct: 524 ELAEQEILRTKRYGKPLALMMLDVDHFKDINDTYGHHVGDTVLQTLGAVCLQTMREIDII 583

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKE 231
           GRLGGEEFA     ++  +A   A  LR  +    + +  G ++  TIS G+        
Sbjct: 584 GRLGGEEFAILLPEATAAQAFDAAERLRLAVAAIAMPLEQGQTLSFTISIGVTGLVAKDS 643

Query: 232 PISTIIYRADQALYVAKKSGRNRVV 256
            I+ ++ RAD+A+Y AK+SGRNRV 
Sbjct: 644 DIADMLKRADEAMYQAKRSGRNRVC 668


>gi|209544655|ref|YP_002276884.1| PAS/PAC sensor-containing diguanylate cyclase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532332|gb|ACI52269.1| diguanylate cyclase with PAS/PAC sensor [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 464

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 63/192 (32%), Positives = 94/192 (48%), Gaps = 11/192 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVF 133
           L Y     +         +  L+R+D L+GL N  AF   +    + L        +++ 
Sbjct: 273 LWYGLVVDVTARRRMEQELHALARVDHLTGLPNRRAFTEGMEQAWQMLRGGVSRGGAVLM 332

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID FK IND +GH  GD V+  ++  L+       F GR+GGEEFAA    +   EA 
Sbjct: 333 IDIDRFKTINDRYGHAAGDAVLRHVATVLMATLRATDFTGRMGGEEFAACLPDTGLDEAG 392

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252
            +A  LR+ I  + +   S  SI +T+S GI+  R         + RAD ALY AK++GR
Sbjct: 393 RIAERLRQAIAGTPVPFES-HSIALTVSIGISKMRLADAGGDDALSRADMALYSAKENGR 451

Query: 253 NRVVCFS-DIEN 263
           +RV   + ++E 
Sbjct: 452 DRVAFATLEVER 463


>gi|307152922|ref|YP_003888306.1| diguanylate cyclase [Cyanothece sp. PCC 7822]
 gi|306983150|gb|ADN15031.1| diguanylate cyclase [Cyanothece sp. PCC 7822]
          Length = 459

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 63/260 (24%), Positives = 127/260 (48%), Gaps = 14/260 (5%)

Query: 12  WLCHEKNL-ESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG--LEYILVEN 68
           WL  E++L  +F  + F++   + F    A    +    +  +GL    G  +    ++ 
Sbjct: 194 WLIKEQDLLPAFIIYPFLVLAPLRFGSKGAATALLLVSIMALLGLVHDTGPFVASSPLKT 253

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISS 121
           L L+ + + ++ ++G +  + + +L  +   + Q++  D L+GL N        +A ++ 
Sbjct: 254 LVLLWLFVNVAAVVGLVLAASISQLIQAKQHLEQMALYDSLTGLDNRILLTDKITAALAR 313

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              Y     +++ D+D FK IND  GH +GD+V+  ++ +L +       V R+GG+EF 
Sbjct: 314 AKRYQNYAVVLYLDLDGFKLINDTMGHDMGDQVLIEVAKRLKMCVRQTDAVARIGGDEFV 373

Query: 182 AAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYR 239
                 +  Q A  +A ++ +II    I + +   +HI +S G+A    +   ++ ++  
Sbjct: 374 VLLQDVNHIQGAERVAQEIIQIISR-PIQLHN-KQMHIGVSIGVAVAPGNGTNLNQLLRN 431

Query: 240 ADQALYVAKKSGRNRVVCFS 259
           AD A+Y AK+SG+N    +S
Sbjct: 432 ADHAMYHAKQSGKNTYKFYS 451


>gi|316935559|ref|YP_004110541.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
 gi|315603273|gb|ADU45808.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
          Length = 359

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 9/182 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDI 136
            +  S + ++  +   + +L+  D ++G+ N   F+       +    Y   +S +  DI
Sbjct: 141 MLIYSDVTDIVRNAEELERLATTDGMTGVYNRRHFLTLADREWARARRYQRPMSFLMIDI 200

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK IND FGH VGD++I  L+            + RLGGEEFA     +   +A ++A
Sbjct: 201 DYFKAINDGFGHQVGDEMIVHLARLARDCKRDCDVLARLGGEEFALLLPETDLAQAQVVA 260

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             LR+ +  + + + +  SI  T+S G+A      + +S ++  ADQALY AK +GRNRV
Sbjct: 261 ERLRREVAANAL-VVASRSIPATVSIGVATALPGMDDVSELMKAADQALYDAKHAGRNRV 319

Query: 256 VC 257
           +C
Sbjct: 320 IC 321


>gi|152993068|ref|YP_001358789.1| hypothetical protein SUN_1481 [Sulfurovum sp. NBC37-1]
 gi|151424929|dbj|BAF72432.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 813

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 91/181 (50%), Gaps = 11/181 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           +EL    + +   +  D L+GL N + F   L         +  KL++ F D+D FKQIN
Sbjct: 374 QELLKQKDILHHQAHHDALTGLPNRTLFSDRLEHGLKLAERHLGKLALFFIDLDNFKQIN 433

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKI 202
           D+ GH +GDKV+  +S +L         + RLGG+EF          Q+ ++LA  ++K+
Sbjct: 434 DSLGHQIGDKVLVVVSKRLKAKIRQEDTLARLGGDEFTIIMENFKDVQQVSVLAQKIQKV 493

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +  +Q     G +++I+ S GI+      +  + ++  AD A+Y AK+ GRN    +S  
Sbjct: 494 L--NQPMHIEGHTLYISCSIGISFYPQDTQNANDLVKYADAAMYKAKEEGRNNFQFYSTE 551

Query: 262 E 262
            
Sbjct: 552 M 552


>gi|71909200|ref|YP_286787.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71848821|gb|AAZ48317.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 827

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           + + E   + +R+  +++ D L+GL N  A +  L         +   ++++F D+D FK
Sbjct: 382 ADITERKQAEDRMRHIAQHDALTGLPNRLALLMRLAQLLPEARRHGWTVAVMFIDLDRFK 441

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND  GH VGD+++  ++ +L  +     FV RLGG+EF       SS  +AAI++  +
Sbjct: 442 IINDTLGHQVGDEMLREVACRLSNLLRETDFVARLGGDEFVIILPSISSPADAAIVSGKI 501

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
              +  +    + G  +H + S GI+           ++  AD A+Y AK +GRN    F
Sbjct: 502 ISALSTAI--EAEGHELHTSPSIGISIFPDDGPDGDIVLKNADTAMYHAKAAGRNNYQFF 559

Query: 259 SDIENNTC 266
           +   N T 
Sbjct: 560 AADMNRTA 567


>gi|253687875|ref|YP_003017065.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251754453|gb|ACT12529.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 490

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/203 (34%), Positives = 102/203 (50%), Gaps = 14/203 (6%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI- 119
           L   L++NL +      + L L +++      +     R+ Q++  D L+GL+N  AF  
Sbjct: 292 LFATLLKNLGISTFVSVLFLFLLWLT------IGGYQRRLEQMATTDKLTGLMNRQAFDY 345

Query: 120 --SSLGS----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
               LG+     ++ LSI+  DID+FK+IND +GH VGD V+  +S  L     +     
Sbjct: 346 LFRRLGTKNALQHKSLSIILIDIDHFKKINDKYGHNVGDMVLKEVSSILSANTRSSDQSC 405

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEF           A   A  LR  IE + +    G  I +T S G+AE    E +
Sbjct: 406 RWGGEEFVILLDDCDINAAQQRAEALRHNIEITPLPYREGI-IQVTASCGVAEYRAGETL 464

Query: 234 STIIYRADQALYVAKKSGRNRVV 256
           S +I RAD ALY AK+ GRN+VV
Sbjct: 465 SMLINRADIALYQAKQQGRNQVV 487


>gi|110633701|ref|YP_673909.1| response regulator PleD [Mesorhizobium sp. BNC1]
 gi|110284685|gb|ABG62744.1| response regulator receiver modulated diguanylate cyclase
           [Chelativorans sp. BNC1]
          Length = 457

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 100/227 (44%), Gaps = 19/227 (8%)

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITI-----SLLLGYISGSILKE-----LFISYNR 99
           L  I L    G E +++  L L +    +       L+  +   I ++     L  S  +
Sbjct: 228 LVPIILFAGEGDETVIIRGLELAVNDYVLRPVERQELIARLRTQIRRKRYNDSLRSSVAQ 287

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
             +++  D L+GL N     S L S           LS++  DID FK IND +GH  GD
Sbjct: 288 TVEMAITDPLTGLHNRRYLDSHLQSLFDRAEARRRPLSVMIVDIDRFKSINDTYGHDGGD 347

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++ +L         V R GGEEF      +    A  +   +R+ I      +  
Sbjct: 348 AVLRAVAARLRRSLRGIDLVCRYGGEEFVVVMPETELSIAERVGERIRQQIAEGAFLLGD 407

Query: 213 GP-SIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +I +T+S G+ A    ++ +  ++ RAD ALY AK SGRNRVV 
Sbjct: 408 SAGAISVTVSIGVAALLQPQDTVEALMKRADMALYEAKSSGRNRVVA 454


>gi|297566847|ref|YP_003685819.1| diguanylate cyclase [Meiothermus silvanus DSM 9946]
 gi|296851296|gb|ADH64311.1| diguanylate cyclase [Meiothermus silvanus DSM 9946]
          Length = 343

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 13/172 (7%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
           L  +  R+  L+  D L+GL N    ++ L         Y++ LS++  D+D FK+ ND 
Sbjct: 173 LEEANARLKVLADHDELTGLYNRRVLMARLKEEFHRALRYDQPLSLLMIDVDGFKEYNDT 232

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD+V+  ++ ++ ++        R GGEEFA     ++   A  LA  LR+ IE 
Sbjct: 233 YGHSAGDEVLQQVAYRIKMMLRAGDLPARYGGEEFAVVLPNTTLTGAVALAERLRQAIER 292

Query: 206 SQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +   +       +TIS G+ A+    E   T+I  AD+ALY AK++GRNRVV
Sbjct: 293 APWPLR-----PLTISVGVAAQTAAAEEPHTLIATADEALYEAKRAGRNRVV 339


>gi|114049396|ref|YP_739946.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella sp. MR-7]
 gi|113890838|gb|ABI44889.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella sp. MR-7]
          Length = 1209

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           Y   + L + ++      +  YI S + + E  ++  RI  L+  D L+ L N  +  S 
Sbjct: 742 YDFPKWLMMSVVRDETGSVSHYIGSFTDISERKVNEERIHFLAHHDSLTLLPNRLSLQSR 801

Query: 122 LGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L +          +++++F D+D+FK IND  GH VGD ++  ++ +L  +  +   V R
Sbjct: 802 LETVFQEAFVSQTQIAVMFIDMDHFKNINDTLGHHVGDMLLLEVARRLKNIVSSDDIVAR 861

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           LGG+EF      +   E A +A  LR  +  +Q  I     +H + S GI+      + +
Sbjct: 862 LGGDEFVVVLSDTDHDEVAKVAEALRSGL--NQTYIIDNKPLHSSPSIGISLFPTDGDSV 919

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             ++  AD A+Y AK +GRN    F+   N
Sbjct: 920 EALMKNADMAMYRAKAAGRNNYQFFTAAMN 949


>gi|330895801|gb|EGH28090.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 418

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 62/182 (34%), Positives = 92/182 (50%), Gaps = 12/182 (6%)

Query: 84  YIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFD 135
           Y+S    +        ++ +++  D L+GL N  +   +L           +  S++  D
Sbjct: 240 YVSISQDVTTRLGREQKLLEIAHSDPLTGLDNRRSAEHTLERQIPAVSMSGKPFSLIICD 299

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK +ND +GHP GD VI  ++  L           R GGEEF      SS ++AA L
Sbjct: 300 IDHFKAVNDRYGHPAGDSVITSVAAILKQRIRLLDVAARWGGEEFLILVPDSSLKQAAEL 359

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A  +RK +E+  I      +  +TIS G+AE    E  + +I RAD+ALY AK+ GRNRV
Sbjct: 360 AERIRKSVESLVIP----ETGSVTISLGVAELSAGETAAGLIQRADKALYQAKRLGRNRV 415

Query: 256 VC 257
            C
Sbjct: 416 EC 417


>gi|83644378|ref|YP_432813.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83632421|gb|ABC28388.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 928

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 57/191 (29%), Positives = 88/191 (46%), Gaps = 11/191 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
           Y+    + +   S  +I   +  D L+ L N S     L            +L+++F D+
Sbjct: 473 YLIVHDITDRKRSEEQIRLQAYYDPLTRLPNRSYLFEHLNSLIASHKREQARLAVLFIDL 532

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAIL 195
           D FKQ+NDN GH VGDK++  +S +L         + RLGG+EF        E+ +A  +
Sbjct: 533 DRFKQVNDNLGHGVGDKLLQQVSTRLKSRLRESDMLARLGGDEFTVVLPHLREETDAIHV 592

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A  L + + +S         +HI  S G+       E  ST+I  AD A+Y AK +GRN+
Sbjct: 593 AKMLLQQLADS--FSVGDYELHIGASIGVTLFPKDGEDASTLIKNADIAMYKAKDNGRNQ 650

Query: 255 VVCFSDIENNT 265
              F +  N  
Sbjct: 651 YRFFEERMNEA 661


>gi|114798852|ref|YP_760979.1| response regulator PleD [Hyphomonas neptunium ATCC 15444]
 gi|114739026|gb|ABI77151.1| response regulator PleD [Hyphomonas neptunium ATCC 15444]
          Length = 455

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 9/172 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L    +R  +LS ID L+GL N          F+      N+ LS++  DID+FK +ND 
Sbjct: 279 LRQRVDRGLELSVIDQLTGLHNRRYMNGQLEQFMQRAARGNQPLSLMMTDIDHFKAVNDT 338

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD V+  +  +L         V R GGEEF      +    A   A  +RK +  
Sbjct: 339 HGHQAGDDVLREIGKRLRANVRPTDVVCRTGGEEFVVLMPNTPGDLACAAAERIRKAVAA 398

Query: 206 SQINISSG-PSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
            +  +  G  ++ IT+SAG++      +    +++RAD ALY AK  GRNRV
Sbjct: 399 EEFPVLGGSQNLRITVSAGVSTLQGAGDTTDDLMHRADTALYQAKTGGRNRV 450


>gi|163748729|ref|ZP_02155982.1| GGDEF domain protein [Shewanella benthica KT99]
 gi|161331839|gb|EDQ02643.1| GGDEF domain protein [Shewanella benthica KT99]
          Length = 621

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 105/204 (51%), Gaps = 17/204 (8%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
           ENL  ++   T+ L +       L+EL  +  ++++ + ID L+G+ N +AF   L    
Sbjct: 423 ENLEQMVQERTLELEVA------LRELNEANQKLTEKATIDGLTGVKNRAAFDKRLLAEG 476

Query: 123 ---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGE 178
                    ++++  DID FK INDN+GH  GD+ +  ++  L   +      V R GGE
Sbjct: 477 RLSRRQQTPMALLMLDIDNFKSINDNYGHLAGDQTLRLIAQILKEQLKRPGDLVSRFGGE 536

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTI 236
           EFA     + E+ A  +A  +R+ I    I      SI +TIS G++      ++  + +
Sbjct: 537 EFAIILPNTGEEGAMQVAELIRQTISELSIRWKES-SISLTISIGVSAEIIDTEQDPTQL 595

Query: 237 IYRADQALYVAKKSGRNRVVCFSD 260
           + +AD+ALY AK  GRNRV+ +++
Sbjct: 596 LDQADKALYRAKNEGRNRVMVYTE 619


>gi|78484724|ref|YP_390649.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78363010|gb|ABB40975.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Thiomicrospira crunogena XCL-2]
          Length = 540

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 63/183 (34%), Positives = 94/183 (51%), Gaps = 10/183 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           ++++L    N++   +  D L+GLLN  AF             +++ +S++  DID+FK+
Sbjct: 357 LMEQLGSLLNQLRDEATKDYLTGLLNRKAFFEQAEQIWLSAKEHHQPISLLMIDIDHFKR 416

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+FGH  GD+V+  +++           V R GGEEF        EQ     A+ L+K
Sbjct: 417 INDSFGHDAGDRVLIEVANVFSQNCREEDLVCRYGGEEFIILLENKDEQPTLEFASRLKK 476

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFS 259
           +I+   ++   G  I  +IS G+A     E   I T I  ADQALY AK +GRNRV  F 
Sbjct: 477 VIQEMSVS-EQGEVIRFSISVGVATGSALELNSIETFISHADQALYQAKANGRNRVEVFH 535

Query: 260 DIE 262
             E
Sbjct: 536 AEE 538


>gi|323699780|ref|ZP_08111692.1| diguanylate cyclase [Desulfovibrio sp. ND132]
 gi|323459712|gb|EGB15577.1| diguanylate cyclase [Desulfovibrio desulfuricans ND132]
          Length = 498

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 85/173 (49%), Gaps = 11/173 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
           +++  +   +  D L+ L N  +F   L         Y+  LS++ FD+D+FK +ND +G
Sbjct: 314 LAFKEVKLRADRDGLTRLYNRRSFDERLVYEIKRRARYHHDLSLLMFDLDHFKAVNDTYG 373

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  + D L  VF T     R GGEEF      +SE+ A  LA  +R  IEN  
Sbjct: 374 HKAGDLVLRKIGDILTTVFRTTDLAARYGGEEFVVLLPHTSEEAAWKLAERVRTAIENCA 433

Query: 208 INISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVC 257
            +   G    +T S G+A             ++ +AD+ALY AK +GRN VV 
Sbjct: 434 FHF-DGRDFSVTASIGVASVEGGSLSASDDDLVLKADKALYQAKNNGRNMVVV 485


>gi|170724885|ref|YP_001758911.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169810232|gb|ACA84816.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           woodyi ATCC 51908]
          Length = 631

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 57/180 (31%), Positives = 96/180 (53%), Gaps = 11/180 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           L+EL  +  ++++ +  D L+G+ N +AF   L             ++I+  DID FK I
Sbjct: 441 LRELNEANQKLTEQATTDSLTGVKNRAAFDKRLQAEGRLSRRQQTPMAILMLDIDRFKSI 500

Query: 143 NDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           NDN+GH  GD+++ F++  L   +      V R GGEEFA     + +  A  +A  +RK
Sbjct: 501 NDNYGHLAGDQILRFIAQTLKEKLKRPADLVSRFGGEEFAIILPNTDQPGAVQVAEQIRK 560

Query: 202 IIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I +  I+  +   I +TIS G++      +   + ++ +AD+ALY AK  GRNRV+ ++
Sbjct: 561 TIYDLPISWEN-IDIPLTISIGVSSEIMQSETQPTKLLEQADKALYRAKNDGRNRVMVYT 619


>gi|70729826|ref|YP_259565.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5]
 gi|68344125|gb|AAY91731.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5]
          Length = 315

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 106/224 (47%), Gaps = 14/224 (6%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISIT------ISLLLGYISGSILK--ELFISYNRI 100
            + +    P  G    + +N +L+ +  +      + L++  ++   +    L  +  ++
Sbjct: 92  LVHFNNYQPITGQGEFMYQNTTLLPLRSSNSEIHHVCLVIYDLTDVAINSLALQKANQQL 151

Query: 101 SQLSRIDCLSGLLNHSAFISSLG----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
             LSR D L+ L N   +   L      +   ++++  DID+FK IND  GH  GD VI 
Sbjct: 152 QHLSRTDHLTQLYNRGHWEQRLQFEYSRHGSSIALLMLDIDHFKSINDRHGHQAGDAVIK 211

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +S+ +          GR GGEEFA     +    A  LA  LR+ +E  ++ I +G +I
Sbjct: 212 RVSELIHQHVRDSDVAGRYGGEEFAILLPHTDLAGARTLAERLRQSVEEQEV-IHNGQAI 270

Query: 217 HITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             TIS GIA           +I  ADQALY +K++GRNRV  ++
Sbjct: 271 AFTISLGIACLDRPARDHRCLIEWADQALYASKRAGRNRVSTYA 314


>gi|254447576|ref|ZP_05061042.1| response regulator PleD [gamma proteobacterium HTCC5015]
 gi|198262919|gb|EDY87198.1| response regulator PleD [gamma proteobacterium HTCC5015]
          Length = 261

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 63/236 (26%), Positives = 110/236 (46%), Gaps = 11/236 (4%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS 88
           +  ++  +  ++       + L  +G  P  G  +      +L+I     + L+  +  S
Sbjct: 12  VATTLLMTAVVSGSTVCCALGLILLGF-PIGGKVWNFAVPAALIIPFFVGTPLVHNLIKS 70

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
            +K L     ++ +L+  D L+GL N   F      ++++        S++  D+D+FK 
Sbjct: 71  NIK-LLRVQKQLEELANKDALTGLYNRQYFFDHANEWDKRCRENSGHFSLLMLDVDHFKS 129

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGHPVGD+V+  +S+ +           R GGEEF      ++   A  +A  +R 
Sbjct: 130 INDRFGHPVGDRVLQRVSNVIKGFMRQEDMCARYGGEEFICLLPDTNAAGAKAVAERIRL 189

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +E+     + G  + +++S G       + + T+I RADQALY AK  GRNR V 
Sbjct: 190 GMEHQAFLKARG--LSLSVSIGATTMSANDNLETLIERADQALYEAKDGGRNRAVF 243


>gi|88800521|ref|ZP_01116084.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Reinekea sp. MED297]
 gi|88776752|gb|EAR07964.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Reinekea sp. MED297]
          Length = 318

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 69/197 (35%), Positives = 108/197 (54%), Gaps = 16/197 (8%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--- 122
           V+NL++++  +T       I+ S L EL  + +R++QLSR D L+ L N + +   L   
Sbjct: 125 VQNLAVIVYDVT------DIATSKL-ELKAANDRLAQLSRTDGLTQLYNRAYWEEMLSNE 177

Query: 123 ----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                 +   LS++ FDID+FK++ND +GH VGD VI  +++++          GR GGE
Sbjct: 178 FKRQKRHAHDLSLIMFDIDHFKKVNDTYGHQVGDDVIRAVAEEVRHNSRNTDIAGRYGGE 237

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTII 237
           EFA   + S  + A + A  LRK IEN +++   G  + +T+S G+A         +  I
Sbjct: 238 EFALLLIDSDAENALLFAERLRKAIENRRVSTPEG-ELQVTVSLGVAPWKESFHHYNAWI 296

Query: 238 YRADQALYVAKKSGRNR 254
             AD+ALY +K  GRNR
Sbjct: 297 EAADKALYTSKDEGRNR 313


>gi|313669502|ref|YP_004049928.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM
           16994]
 gi|313156699|gb|ADR35375.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM
           16994]
          Length = 648

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 17/204 (8%)

Query: 64  ILVENLSLVIISITISLL------LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           ++     +  + ITIS +       G  +   + E      ++  +++ D L+GL N   
Sbjct: 444 MVTRTGEVRWLYITISTVKFRGEWTGLGTAMDMTERKEMEKKLEYVAQTDALTGLYNRLR 503

Query: 118 FISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           F   +          +  LS+++ DID+FK+IND  GH VGD ++  ++  +  +     
Sbjct: 504 FDDIVQREIAFGKRQDTPLSVIYMDIDFFKKINDTCGHDVGDIILKEIAFIIRDILRASD 563

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
           +  R GGEEF      ++ QE  +LA  LR+ I  +  ++ +     +T+S G+ +  + 
Sbjct: 564 YPFRWGGEEFIILCPSTTLQEIKVLAERLRERIAENNFSVYT----KVTVSIGLTQYHND 619

Query: 231 EPISTIIYRADQALYVAKKSGRNR 254
           E +  +I RAD ALY AK++GRNR
Sbjct: 620 ESVDEMIKRADLALYQAKENGRNR 643


>gi|167949591|ref|ZP_02536665.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 592

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 11/183 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
                S  +I   +  D L+GL N S  +  L            +L+++F D+D FK +N
Sbjct: 276 TRRKESEQQIRFQANYDALTGLPNRSLLLDRLTHAINSAEREAWELALLFVDLDQFKIVN 335

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKI 202
           D FGH +GD+++   +++L         V R GG+EF       S   +AA +A+ + + 
Sbjct: 336 DTFGHVMGDELLQHAAERLKSCVRESDTVARFGGDEFIILLQDISGADDAAQIADKVIEK 395

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +  S+  + +G  + I  S GI           T++  AD A+Y AK++ RNR   F+  
Sbjct: 396 L--SRYFLLAGREVIIGASIGITLFPDDASDSDTLLRNADMAMYRAKETSRNRYQFFTTA 453

Query: 262 ENN 264
              
Sbjct: 454 MQE 456


>gi|332529270|ref|ZP_08405233.1| response regulator PleD [Hylemonella gracilis ATCC 19624]
 gi|332041280|gb|EGI77643.1| response regulator PleD [Hylemonella gracilis ATCC 19624]
          Length = 384

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 122/283 (43%), Gaps = 39/283 (13%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG--LEYILV 66
           +   L  +K   +  P   ++         +   I+ + +   +  L   +G  L + L 
Sbjct: 105 MVPLLMPDKGANALLPWLIVLLCG---GAAVTAPIYASYVRAHFSYLAGLFGVLLGHALW 161

Query: 67  ENLSLVIISITISLL------------LGYISGSILKELF---ISYNRISQL-------S 104
           +   L  +SIT+ L+            +G+ +   L++         R++ L       +
Sbjct: 162 QYQDLAHLSITLGLILFLVLLTWHIRRIGHSAEEALRQQLKNTAQNERLAGLLRVARRDA 221

Query: 105 RIDCLSGLLNHSAFISSL----------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
             D L+GL N     S+L                LS++  D+D+FK++ND  GH VGD++
Sbjct: 222 ETDALTGLANRRLLDSTLSSRWQVGGLNDRRERPLSVLMLDLDHFKRVNDTHGHDVGDQI 281

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   + +       P    R GGEEF     G+   +A ++A  +R  I      + + P
Sbjct: 282 LKAFAARTSQQLRKPDLFARYGGEEFTVLLPGTDAPKALVIAERVRAAIAGMP--LIAEP 339

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + IT+S G+A+R   E    ++ RAD ALY AK+ GRNRV+ 
Sbjct: 340 PVPITVSIGVAQRKPNESTEALLARADVALYAAKQGGRNRVML 382


>gi|222054122|ref|YP_002536484.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. FRC-32]
 gi|221563411|gb|ACM19383.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. FRC-32]
          Length = 709

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 12/188 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
            + E   + + I Q++  D L+GL N   F             +   L+I+F D+D FK 
Sbjct: 255 DITERKQAEDTIKQMAYYDALTGLPNRQLFNELMHLALAQAQRHGRLLAILFLDLDRFKV 314

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
           IND  GH VGD+++   + +L          V R GG+EF          QEA  +A  +
Sbjct: 315 INDTLGHGVGDELLKAAALRLRECCRRDIDTVARRGGDEFIILLPDLDSVQEAVRVAQKI 374

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
             I+  +++       + ++   GI+          T+I  AD A+Y AK+ GRNR   +
Sbjct: 375 --IVSFNRLFTLPDIELFVSTCIGISIYPDDGKDAETLIKNADMAMYRAKEQGRNRYHLY 432

Query: 259 SDIENNTC 266
           +   +   
Sbjct: 433 TSSMDEQA 440


>gi|302343664|ref|YP_003808193.1| periplasmic/7TM domain sensor diguanylate cyclase [Desulfarculus
           baarsii DSM 2075]
 gi|301640277|gb|ADK85599.1| periplasmic/7TM domain sensor diguanylate cyclase [Desulfarculus
           baarsii DSM 2075]
          Length = 581

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 74/238 (31%), Positives = 110/238 (46%), Gaps = 14/238 (5%)

Query: 37  IFIATVIFIANIFLFYIG--LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE-- 92
           + IA   F+  + LF +G  + P   L   ++  L  V+ ++ +S  L     S+  E  
Sbjct: 343 LVIAWGGFMLGVCLFSLGGVVIPRTPLTVYML-PLGAVLDAVLLSFALADRIRSLQSERA 401

Query: 93  -LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
            L  S +   +L+R D L+GL N       L             LS++  D+D FK  ND
Sbjct: 402 DLAKSRSHFMELARRDGLTGLYNRRHAFEHLRRILAEHQEQARPLSLLMLDVDDFKAFND 461

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGHP GDKV+  L+  +           R GGEEF      SS  +A  +A  +R   E
Sbjct: 462 TFGHPEGDKVLVGLAAAICQGVRARDTACRYGGEEFMVVLPDSSNADALKVAERIRDAFE 521

Query: 205 NSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            ++ N      + +T+S G A      + +  ++ RADQALY AK SG+NR V F D+
Sbjct: 522 QTRFNPGGFRPLSVTVSIGAASLAGAGDNLEALVGRADQALYAAKASGKNRTVSFDDL 579


>gi|50121764|ref|YP_050931.1| hypothetical protein ECA2840 [Pectobacterium atrosepticum SCRI1043]
 gi|49612290|emb|CAG75740.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043]
          Length = 490

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 64/167 (38%), Positives = 89/167 (53%), Gaps = 8/167 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFI---SSLGS----YNEKLSIVFFDIDYFKQINDNFGHP 149
             R+ Q++  D L+GL+N  AF      LG+     ++ LSI+  DID+FK+IND +GH 
Sbjct: 322 QRRLEQMATTDKLTGLMNRQAFDYLFRRLGTKNALQHKSLSILLIDIDHFKKINDKYGHN 381

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD V+  +S  L     +     R GGEEF           A   A  LR  IE + + 
Sbjct: 382 VGDLVLQEVSAILSTNTRSSDQSCRWGGEEFVILLDDCDINAAQQRAEALRHSIEIAHLP 441

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              G  I +T+S G+AE    E +S +I RAD ALY AK+ GRN+V+
Sbjct: 442 YREGI-IQVTVSCGVAEYRDGETLSMLINRADIALYQAKQQGRNQVM 487


>gi|26988709|ref|NP_744134.1| sensory box protein [Pseudomonas putida KT2440]
 gi|24983498|gb|AAN67598.1|AE016389_6 sensory box protein [Pseudomonas putida KT2440]
          Length = 1136

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 16/197 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
            ++   + +L  +  +I  L+  D L+ L N +  +  L         +N + +++F D+
Sbjct: 679 LLTARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDL 738

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS------EQ 190
           D+FK IND+ GHPVGD V+  ++ +L         V RLGG+EF     G        E+
Sbjct: 739 DHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSREHVEE 798

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKK 249
           +   LA+ LR+++   +     G  + +T S G+A    H    + ++ RAD ALY AK 
Sbjct: 799 KVRELADTLRELLA--EPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKRADIALYRAKD 856

Query: 250 SGRNRVVCFSDIENNTC 266
           SGRN    F        
Sbjct: 857 SGRNTTQLFHTTMQKAA 873


>gi|226314792|ref|YP_002774688.1| hypothetical protein BBR47_52070 [Brevibacillus brevis NBRC 100599]
 gi|226097742|dbj|BAH46184.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 530

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 8/185 (4%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDID 137
           LL       L  +     +++  +R D L+GL N      ++  +       SI+  D+D
Sbjct: 350 LLSRAIRFALTNIKKKTEQLTHDARTDPLTGLTNRRTLEETMQKWMAEQIPFSIMMMDLD 409

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK IND +GH  GD+V+   +  +           R GGEEF      +  +EA  +A 
Sbjct: 410 RFKAINDTYGHQAGDEVLRHFAKIISSSLRPEDVSCRFGGEEFVVLVSHTGLEEAYQVAE 469

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +R+ +E     I       +T+S GIA    H      +++ AD+A+Y AK++GRN+ +
Sbjct: 470 RIRRALETRTNPIGQ----RLTVSQGIAHYPSHAVSPEGLLHVADEAMYKAKRAGRNQTM 525

Query: 257 CFSDI 261
              + 
Sbjct: 526 IAEEE 530


>gi|117924687|ref|YP_865304.1| cyclic nucleotide-binding protein [Magnetococcus sp. MC-1]
 gi|117608443|gb|ABK43898.1| cyclic nucleotide-binding protein [Magnetococcus sp. MC-1]
          Length = 320

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 55/181 (30%), Positives = 87/181 (48%), Gaps = 9/181 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           +  ++ E      ++   +++D L+G+ N   F  S+             LS++  D+D+
Sbjct: 138 NNRVIIEGSERQRKLETFAKVDPLTGIYNRRWFDESMQRQMRRVEHSQNPLSLIMLDVDH 197

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+ ND  GH  GD+ +  L+  + +         R GGEEFA     +      ++A  
Sbjct: 198 FKRYNDTHGHQGGDEALIALAHTISLHLRPGDIAARYGGEEFAVVLPDTDAVSGRMIAER 257

Query: 199 LRKIIENSQINISSGPSI-HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           LR  +E  +I    G S+  ITIS G+A+     + +S +I  AD ALY AK  GRNRVV
Sbjct: 258 LRTAVEALEIKDDEGNSLSGITISLGVAQTSGTVDSVSELIATADAALYQAKNQGRNRVV 317

Query: 257 C 257
            
Sbjct: 318 V 318


>gi|220918717|ref|YP_002494021.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956571|gb|ACL66955.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 322

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 66/235 (28%), Positives = 105/235 (44%), Gaps = 16/235 (6%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           FI  +I      L         G +  L +  +   I    + +L     ++  +L  + 
Sbjct: 78  FIPVIILSVKSDLDSKVAGLRIGADDFLAKPFAEAEILARCAAMLRI--KTLQDQLRETQ 135

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ + +  D L+GL N  AF   L         Y++ +S++  D+D+FK +ND +GHP 
Sbjct: 136 RRLREQTLTDDLTGLKNRRAFDERLQEEFRRAHRYSDPVSLIMIDLDHFKLVNDRYGHPF 195

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+   S+QL      P    R GGEEFA     +    A  +A  + K +      +
Sbjct: 196 GDLVLRGASEQLRASTRDPDICARYGGEEFAVILPKTHLSGALAVAERIWKELSARSYPV 255

Query: 211 SSG-----PSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCF 258
            +G      SI +T S GIA    K+      ++  AD+ALY AKK+GRN +  +
Sbjct: 256 PAGSTGPETSIQVTASMGIAFYPSKDIGSPEALVRYADEALYQAKKAGRNTICLY 310


>gi|237748475|ref|ZP_04578955.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacter formigenes OXCC13]
 gi|229379837|gb|EEO29928.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacter formigenes OXCC13]
          Length = 1021

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           + + L E   +  R+  L+  D L+GL N +         IS     +E L+++F D+D 
Sbjct: 570 TFTDLTERKETEERVQWLAHFDPLTGLPNRTLLHIRSNLAISLAHRRHEPLALMFLDLDN 629

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND+ GH +GD+++   +++L         + RLGG+EF      +    A  +A  
Sbjct: 630 FKNVNDSLGHGIGDELLKQFAERLKNAVRDQDTISRLGGDEFVLVLPNTDTGGATSIAEK 689

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L  I   ++        +++T S GIA          T+   AD A+Y  K++GRN    
Sbjct: 690 LLAI--AAEPYHIDPHELNLTASIGIAMFPADGADFETLSCSADTAMYRTKQNGRNNYCF 747

Query: 258 FSDIEN 263
           F+    
Sbjct: 748 FTAEMQ 753


>gi|197117893|ref|YP_002138320.1| response receiver sensor diguanylate cyclase/phosphodiesterase
           [Geobacter bemidjiensis Bem]
 gi|197087253|gb|ACH38524.1| response receiver sensor diguanylate cyclase/phosphodiesterase, PAS
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 704

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 54/200 (27%), Positives = 89/200 (44%), Gaps = 23/200 (11%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             + E   +  +I  L+  D L+GL N   F+  L         Y+  L+++F D+D FK
Sbjct: 250 QDITERKRAEEQIRLLAYYDALTGLPNRRFFLQQLEQALVFANRYDRMLAVLFLDLDRFK 309

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG------------RLGGEEFAAAALGSS 188
            +ND  GH VGD+++  ++D+L+        +             RLGG+EF      S 
Sbjct: 310 LVNDTLGHGVGDRLLQDVADRLLRCVRRGDCLARADEECPPSLVSRLGGDEFTIML--SD 367

Query: 189 EQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYV 246
            +    +A   R+I+E   +  S  G  + ++ S GI+         S +I  AD A+Y 
Sbjct: 368 IEHFQDVAKIARRILEAVSVPYSLEGQEVFVSTSIGISLYPFDATTASDLIRNADGAMYQ 427

Query: 247 AKKSGRNRVVCFSDIENNTC 266
           AK+ GRN    + +  N   
Sbjct: 428 AKEQGRNGYQIYDESMNAKA 447


>gi|225850806|ref|YP_002731040.1| response regulator receiver modulated diguanylate cyclase
           [Persephonella marina EX-H1]
 gi|225645373|gb|ACO03559.1| response regulator receiver modulated diguanylate cyclase
           [Persephonella marina EX-H1]
          Length = 359

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 117/238 (49%), Gaps = 23/238 (9%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS 88
           ++++I   + I  +  +  + +  I  +P         + +   + +  + ++L Y+  S
Sbjct: 122 LFWNITLIVVIVILAVLNKLNIVPIPYSP---------DEIRQALSAYVVIMVLAYVFES 172

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
               L  SY +I +L+  D L+G  N       L         Y   LS++ FDID FK 
Sbjct: 173 A---LLSSYEKIKKLATTDPLTGAFNRYQLFKKLEEEIERSKRYGNHLSLIMFDIDNFKS 229

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH +GD+V+    D +         +GR GGEEF     G +++ A  +A  +RK
Sbjct: 230 INDTYGHNIGDQVLKITIDTIKNHIRKTDTLGRFGGEEFMIICPGINDEGARNIAEKIRK 289

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++++  I +   P   ITIS G+AE    E I+  I +AD ALY AKK G+NRV  +S
Sbjct: 290 LVKD--IKVEGIPE--ITISVGVAEYFPDESITDFIKKADIALYSAKKKGKNRVEIYS 343


>gi|169634781|ref|YP_001708517.1| GGDEF domain-containing protein [Acinetobacter baumannii SDF]
 gi|169153573|emb|CAP02748.1| putative membrane protein with GGDEF domain [Acinetobacter
           baumannii]
          Length = 397

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 82/284 (28%), Positives = 128/284 (45%), Gaps = 30/284 (10%)

Query: 6   KDFLSIWLCHEKNL-ESFSPHTFMIYFS------------IFFSIFI-ATVIFIANIFLF 51
                + LCH+  L  S SP T + Y              I +S FI AT+I     +L 
Sbjct: 110 VQAFMLMLCHDGYLIGSISPATMVGYVGTIGVGLVLFERKIVYSAFIPATIILAVCTYLS 169

Query: 52  YIG------LTPFYGLEYILVENLSL--VIISITISLLLGYISGSILKELFISYNR---I 100
             G      L  F  + +       L  ++  I   L+  +I   IL  L     R   I
Sbjct: 170 MTGVISYAPLFNFTAMRHAQTNPFWLGSMLFFIMPILVACFILFEIL--LIQWRQRETYI 227

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            +LS+ID L+ +LN  +  + L + +E+    +++  DID+FK+IND +GH  GD+V+  
Sbjct: 228 QRLSQIDPLTNVLNRRSLNTHLEALHEQQFDYAVILLDIDHFKKINDIYGHHQGDQVLIE 287

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           ++  L         +GR GGEEF      +   +A  +A   R+ ++   I  +    IH
Sbjct: 288 IARCLSENLRNEDIIGRFGGEEFILLLPHTDILQAEKIAERCRQALQELTIFNNQNIQIH 347

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           ++ S GI+          +I +ADQALY  K SGRN+V  F  +
Sbjct: 348 VSASFGISSSAFANDPYLVIRQADQALYAVKASGRNKVRTFHQL 391


>gi|300867867|ref|ZP_07112508.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300334103|emb|CBN57684.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 717

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 11/175 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           EL +S +R+   +  D L+GL N   F  SL    ++       ++++F D+D FK IND
Sbjct: 544 ELLLSEDRLRYQAYHDDLTGLPNRQLFHESLSVSIKQASVKDQLVALLFLDLDGFKLIND 603

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
           + GH VGD ++  ++++L         + RLGG+EF     G   + +AA +A  +   I
Sbjct: 604 SLGHDVGDLLLKGVAERLKGCLRGSDTISRLGGDEFTVILPGIPGKPDAARVAEKILDAI 663

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +Q+ +  G SI +T S GI+      +   T+I  AD A+Y AK+ G+NR   
Sbjct: 664 --TQVFLLDGNSIAVTTSIGISLYPLDGQDKETLIKNADAAMYRAKELGKNRFEF 716


>gi|293603221|ref|ZP_06685654.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Achromobacter piechaudii ATCC 43553]
 gi|292818452|gb|EFF77500.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Achromobacter piechaudii ATCC 43553]
          Length = 870

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 104/222 (46%), Gaps = 16/222 (7%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112
           IG   FY  E  L ++    ++ + + L       ++  E   +  RI QL+  D L+GL
Sbjct: 401 IGTFGFYFRERRLPDDFHHRLVDVCVYLC------ALALEREEARARIRQLAFYDELTGL 454

Query: 113 LNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N +  ++             ++++++F D+D FKQ+ND  GHP+GD ++  ++ +L  +
Sbjct: 455 PNRNLLLAQAEQSIARAEPERKRVAVLFLDLDRFKQVNDTLGHPIGDALLRDVAQRLCRL 514

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                 VGRL G+EF               A  +  ++  +Q     G +++ ++S GI+
Sbjct: 515 ARATDIVGRLSGDEFVMLMPDFEHGRLTAAAEHI--LVALAQPFSVGGVTLNPSVSIGIS 572

Query: 226 ERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
                   + T++  AD A+Y AK +GRNR+  FS   N   
Sbjct: 573 VFPENGRDMDTLLRHADMAMYQAKTAGRNRISFFSAEMNRQA 614


>gi|323700644|ref|ZP_08112556.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio sp. ND132]
 gi|323460576|gb|EGB16441.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           desulfuricans ND132]
          Length = 654

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 8/183 (4%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           L Y     + E      R+ +++  D L+G  N  AF             +N  L+++  
Sbjct: 472 LHYSIVHDVTEKRRLEARLERMATRDQLTGAYNRHAFFQRARHELARARRFNRPLAVLMC 531

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D+FK++ND+ GH +GD+V+   + +            R+GGEEFAA  + +  + A  
Sbjct: 532 DLDHFKEVNDSHGHAIGDEVLRTFALRCRADSRKTDVFARMGGEEFAALLVETDAERAVE 591

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +A  +R +  +  ++   G  + +T+S G+A    ++ I+ ++ RAD+ALY AK+SGRN 
Sbjct: 592 VAERIRAMTASKPVSTEVG-DMAVTVSIGVAALNAEDSINELLKRADEALYKAKESGRNS 650

Query: 255 VVC 257
           VV 
Sbjct: 651 VVL 653


>gi|120597069|ref|YP_961643.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|146291491|ref|YP_001181915.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
 gi|120557162|gb|ABM23089.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|145563181|gb|ABP74116.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
          Length = 486

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 60/193 (31%), Positives = 97/193 (50%), Gaps = 11/193 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------ 125
           + +S+ +++ + +IS      L     ++  ++  D L+G  N   F             
Sbjct: 295 LALSLIVTMGILFISNMT---LGRYQRKLEMMASTDKLTGAANRQVFEEYFRQALDKAKL 351

Query: 126 -NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
               +SI+  DID+FK++ND++GH +GD V+  +++ L  +      + R GGEEF    
Sbjct: 352 TQSPISILLLDIDHFKKVNDSYGHGMGDLVLKTMANMLRGLLQPQDILCRWGGEEFLILL 411

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
                  AA  A  +R +I   +I + +G  I IT S G+AE   +EP   +I RAD AL
Sbjct: 412 PEMDLSRAAEFAEQIRDLISLREIKV-NGLHISITASIGVAEHQAQEPAEDLIKRADLAL 470

Query: 245 YVAKKSGRNRVVC 257
           Y AK +GRN+VV 
Sbjct: 471 YQAKAAGRNQVVL 483


>gi|220932075|ref|YP_002508983.1| diguanylate cyclase [Halothermothrix orenii H 168]
 gi|219993385|gb|ACL69988.1| diguanylate cyclase [Halothermothrix orenii H 168]
          Length = 499

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 62/175 (35%), Positives = 98/175 (56%), Gaps = 5/175 (2%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQI 142
           S+  +  + Y +  +++  D L+GL NH+ F + L           L+++  DID FKQ+
Sbjct: 324 SVALQNALLYKKQEEMANRDGLTGLYNHAYFQNRLHLLLKQENKHPLTLIIMDIDNFKQV 383

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH VGDKV+  L+  L         + R GGEEFA     +  ++   +A  LRK+
Sbjct: 384 NDRFGHLVGDKVLKELAHLLKHNLREGDLIARYGGEEFAIILPETELKQGEFIAKRLRKL 443

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I +++I + +  S++IT+S G+A+   K      I +ADQALY AK++G+NRV  
Sbjct: 444 ISDNEIVLDNNRSLYITVSIGVAQYNKKWSQEEFIDKADQALYKAKEAGKNRVTL 498


>gi|296132516|ref|YP_003639763.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Thermincola sp. JR]
 gi|296031094|gb|ADG81862.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Thermincola potens JR]
          Length = 1349

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 11/185 (5%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
             + E      +++  +  D L+ + N   F   L          NE L+++F D+D FK 
Sbjct: 906  DVSEKRNMIEQLTHQAYHDPLTDIPNRVLFNDRLNVALAHAKRNNEMLAVMFLDLDRFKL 965

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
            +ND  GH +GD+++  ++ +L +       + RLGG+EF        SE+EAA +A  + 
Sbjct: 966  VNDMLGHSIGDRLLQEVAKKLSICLRKGDTIARLGGDEFTLLLPQIKSEKEAAKIAQKIL 1025

Query: 201  KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            K  +  +    SG   +IT S G+A      E    ++  AD A+Y AK+ GRN    ++
Sbjct: 1026 KAFQ--KPVTLSGHEFYITASIGVALYPSDGEKAEILMKNADTAMYRAKEQGRNTYQLYT 1083

Query: 260  DIENN 264
               N 
Sbjct: 1084 PAMNK 1088


>gi|66044408|ref|YP_234249.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63255115|gb|AAY36211.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|330969164|gb|EGH69230.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 418

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 93/185 (50%), Gaps = 12/185 (6%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           +  Y+S    +        ++ +++  D L+GL N  +   +L           +  S++
Sbjct: 237 ITHYVSISQDVTTRLGREQKLLEIAHSDPLTGLDNRRSAEHTLERQIPAVSMSGKPFSLI 296

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK +ND +GHP GD VI  ++  L           R GGEEF      SS ++A
Sbjct: 297 ICDIDHFKAVNDRYGHPAGDSVITSVAAILKQRIRLLDVAARWGGEEFLILVPDSSLKQA 356

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           A LA  +R  +E+  I      +  +TIS G+AE    E  +++I RAD+ALY AK+ GR
Sbjct: 357 AELAERIRNSVESLVIP----ETGSVTISLGVAELSAGETAASLIQRADKALYQAKRLGR 412

Query: 253 NRVVC 257
           NRV C
Sbjct: 413 NRVEC 417


>gi|167587527|ref|ZP_02379915.1| diguanylate cyclase (GGDEF domain) [Burkholderia ubonensis Bu]
          Length = 468

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 103/245 (42%), Gaps = 9/245 (3%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL 80
           + S   F++        ++A  IF A  FL   G+   +       +  S   +   +  
Sbjct: 224 ALSSLAFILGRPWNHMWWLAHAIFAAGFFLLSFGVVQAFHTTRSFSKIYSQEELFARLRD 283

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVF 133
            +   +   L+EL  +  ++  ++  D L+G  N   F+                 S++ 
Sbjct: 284 AMSR-TERALQELQRTNEKLEHMAATDPLTGAANRRHFLDRVETEIALAKRNGAPFSVLS 342

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D+FK IND++GH  GD+V+     + +        V R+GGEEF      +    A 
Sbjct: 343 LDLDHFKSINDSYGHQAGDEVLQRFVKKCLDAIRPYDGVARVGGEEFMVLLPQAGLDTAR 402

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
            +   +R  I  +      G  I +T+S G++E     E +  I+ + D+ LY AK  GR
Sbjct: 403 SIGERIRAAIAGTPFEAGIGKPIAVTVSVGVSEFGRDGETVDAILRKVDERLYRAKDQGR 462

Query: 253 NRVVC 257
           NRVV 
Sbjct: 463 NRVVA 467


>gi|91201200|emb|CAJ74260.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 1069

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 13/182 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E      ++  ++  D L+ L N   F   L         Y    +++F D+D FK 
Sbjct: 639 DITEHKKFETQLLNMATRDPLTNLFNRRRFQEELQYWIAQTLRYGATGALLFLDLDNFKY 698

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD+++  L++ L           R GG+EFA     +  ++A ++AN++ +
Sbjct: 699 VNDTLGHQAGDELLIRLAEMLRSRLRDTDIFARFGGDEFAILLPYTDREKAGLIANEILE 758

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +        S      +T S GI     H     T++  AD A+Y AK+SGRNR   FS 
Sbjct: 759 LTREHTFEHS-----KVTFSIGIVIFPEHGRDAETLLVNADLAMYRAKESGRNRFCVFSQ 813

Query: 261 IE 262
            +
Sbjct: 814 EQ 815


>gi|16330352|ref|NP_441080.1| hypothetical protein sll1687 [Synechocystis sp. PCC 6803]
 gi|1652841|dbj|BAA17760.1| sll1687 [Synechocystis sp. PCC 6803]
          Length = 970

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 78/173 (45%), Gaps = 8/173 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
             R+   S  D L+GL N                 YN  + ++  DID+FKQ ND  GH 
Sbjct: 794 RERLENQSIRDPLTGLFNRRYLEQFFLQEIGRAKRYNHSIGVIMGDIDHFKQFNDQLGHD 853

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  +   L           R GGEE       +S ++  + A  LR+ I + ++ 
Sbjct: 854 AGDHVLKTIGRILQSNIRGSDIACRYGGEEMTIVLPQTSLEDTLVKAESLRQAIASMEVE 913

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                   +T+S G+A    H E +  II  AD+ALY AK +GRNRVV   ++
Sbjct: 914 YKGKELGTLTVSLGVACYPNHGETMVNIIQAADRALYQAKAAGRNRVVMADEV 966


>gi|303249290|ref|ZP_07335522.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
 gi|302489296|gb|EFL49253.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
          Length = 402

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 71/247 (28%), Positives = 114/247 (46%), Gaps = 17/247 (6%)

Query: 20  ESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL--SLVIISIT 77
            ++  ++    FS F      +  F AN  L  +      G + I+   L  S+++I + 
Sbjct: 150 RNWRTYSMQTVFSGFLFFISVSYAFRANESLDALQ-CALGGPDPIVKTLLLASMLLIPLL 208

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLS 130
              LL   SG +  EL  + + + + ++ D L+GL N   F+              E +S
Sbjct: 209 AFCLLSMTSGRVEAELREARDALRKQAQTDFLTGLPNRRHFLHLAEKALDRARERGEPVS 268

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
            +  D+DYFK IND +GH  GD V+  ++ +L         +GRLGGEEF     G   +
Sbjct: 269 FIMLDLDYFKDINDTYGHQTGDVVLRAVARRLAEALRDGDEIGRLGGEEFGVLLPGLDGK 328

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +A  +A  LR+ +         G +  +T S G+A       ++ ++ RAD  LY AK +
Sbjct: 329 DAEEVAERLRQAVAALS---PGGHT--VTASLGMASGATG--LNALLARADGCLYAAKGA 381

Query: 251 GRNRVVC 257
           GRNRVV 
Sbjct: 382 GRNRVVA 388


>gi|89902369|ref|YP_524840.1| PAS/PAC sensor-containing diguanylate cyclase [Rhodoferax
           ferrireducens T118]
 gi|89347106|gb|ABD71309.1| diguanylate cyclase with PAS/PAC sensor [Rhodoferax ferrireducens
           T118]
          Length = 757

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 10/185 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           + + +     + + I QL+  D L+GL N       L            +L+++F D+D 
Sbjct: 554 THTDITLRKAAEDDIRQLAFYDPLTGLPNRRLLQDRLHQAMSQARRERGRLALLFLDLDK 613

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAN 197
           FK +ND+FGH  GD+++  ++ +L         V RLGG+EF        + Q+A  +A 
Sbjct: 614 FKPVNDDFGHQAGDELLQAVAQRLQACVRESDTVARLGGDEFVLLLPSIEAAQDAMAVAE 673

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            + +        +S+G +  ++ S GIA    H      ++  AD+A+Y AK +GR+R V
Sbjct: 674 KIHQAF-GRPFTLSAGRNATMSFSTGIAVYPEHASDEKALMRHADEAMYQAKAAGRDRFV 732

Query: 257 CFSDI 261
            F+  
Sbjct: 733 LFAPA 737


>gi|70733599|ref|YP_257239.1| diguanylate cyclase [Pseudomonas fluorescens Pf-5]
 gi|68347898|gb|AAY95504.1| diguanylate cyclase, putative [Pseudomonas fluorescens Pf-5]
          Length = 727

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 87/184 (47%), Gaps = 11/184 (5%)

Query: 82  LGYISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           L     S+ +E       + +    + ID L+GL N +A+   L         +   L +
Sbjct: 542 LAERVSSMEQEAQGYREHLEEQRQKALIDPLTGLPNRAAWSERLEHEVGQWQQHGNSLLL 601

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK+INDN+GH  GDKV+  +++ L        F+ R GGEEF      +    
Sbjct: 602 AMLDLDHFKRINDNYGHLAGDKVLKIIANVLRKRLRGSDFIARFGGEEFVLLLPNTPWPV 661

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              +   LR  IE    +   G  + IT+S G++     +    +I RADQALY AK +G
Sbjct: 662 GVRIVEALRAAIEACPFHFK-GEPVTITVSVGLSAFKAGDRSDLVIKRADQALYRAKDAG 720

Query: 252 RNRV 255
           RNRV
Sbjct: 721 RNRV 724


>gi|77458114|ref|YP_347619.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas fluorescens Pf0-1]
 gi|77382117|gb|ABA73630.1| putative sensory box GGDEF/EAL domain protein [Pseudomonas
           fluorescens Pf0-1]
          Length = 1092

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 21/219 (9%)

Query: 64  ILVENLSLVIISI--TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           IL   +S+  I++  T  LLL   +   +  L  +  +I  L+  D L+ L N +  +  
Sbjct: 622 ILTVEVSVEPITLNETACLLL---TARDVSLLKNAEAQIRHLAYHDPLTNLPNRALLMDR 678

Query: 122 L-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L         +N + +++F D+D+FK IND+ GHPVGD V+  ++ +L         V R
Sbjct: 679 LSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRMEDTVAR 738

Query: 175 LGGEEFAAAALGSS------EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-R 227
           LGG+EF     G          +   LA+ +R+++  S+     G  + +T S G+A   
Sbjct: 739 LGGDEFVVLLSGLEGTRNEVSAQVRELADTIRELL--SEPMFLDGQRLQVTPSIGVALIP 796

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            H    + ++ RAD ALY AK SGRN    + +      
Sbjct: 797 DHGSTPTDLLKRADIALYRAKDSGRNTTQMYHNTMQKAA 835


>gi|197123948|ref|YP_002135899.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter sp. K]
 gi|196173797|gb|ACG74770.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter sp. K]
          Length = 322

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 66/235 (28%), Positives = 105/235 (44%), Gaps = 16/235 (6%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           FI  +I      L         G +  L +  +   I    + +L     ++  +L  + 
Sbjct: 78  FIPVIILSVKSDLDSKVAGLRIGADDFLAKPFAEAEILARCAAMLRI--KTLQDQLRETQ 135

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ + +  D L+GL N  AF   L         Y++ +S++  D+D+FK +ND +GHP 
Sbjct: 136 RRLREQTLTDDLTGLKNRRAFDERLQEEFRRAHRYSDPVSLIMIDLDHFKLVNDRYGHPF 195

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+   S+QL      P    R GGEEFA     +    A  +A  + K +      +
Sbjct: 196 GDLVLRGASEQLRASTRDPDICARYGGEEFAVILPKTHLSGALAVAERIWKELSARSYPV 255

Query: 211 SSG-----PSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCF 258
            +G      SI +T S GIA    K+      ++  AD+ALY AKK+GRN +  +
Sbjct: 256 PAGSTGPETSIQVTASMGIAFYPSKDIGSPEALVRYADEALYQAKKAGRNTICLY 310


>gi|256830007|ref|YP_003158735.1| diguanylate cyclase/phosphodiesterase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579183|gb|ACU90319.1| diguanylate cyclase/phosphodiesterase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 556

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 12/194 (6%)

Query: 80  LLLGYISGSILKELFISYN-RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSI 131
           L++  ++  ++ E     +  +S ++  D L+GL N +     L         +  K+++
Sbjct: 102 LVVASVNAHMMTEAVERVSVHLSYMAEHDLLTGLPNRALLTDRLVQSILLAKRHGNKVAL 161

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQ 190
           +F D+D+FK IND+ GH +GD+++  ++ +L         V R GG+EF          Q
Sbjct: 162 MFLDLDHFKHINDSLGHGIGDQLLQSVAKRLQASVRNSDTVSRHGGDEFVVLLPEVEDVQ 221

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKK 249
            AA  A  L   +   + +  SG  + +T+S GI+           ++ +AD A+Y AKK
Sbjct: 222 SAAHAAEKLIHSV--GEPHFISGQELRVTLSVGISMYPDDGVDAEALMRKADMAMYQAKK 279

Query: 250 SGRNRVVCFSDIEN 263
           +GRN    F+   N
Sbjct: 280 AGRNSYKIFTPSMN 293


>gi|239905574|ref|YP_002952313.1| putative signaling protein [Desulfovibrio magneticus RS-1]
 gi|239795438|dbj|BAH74427.1| putative signaling protein [Desulfovibrio magneticus RS-1]
          Length = 629

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 10/186 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDI 136
           + +   + E  I   R+ +++  D L+GL N   F+            +   LSI  FDI
Sbjct: 433 FAAARDITERKIMEERLKEMATTDSLTGLNNRQHFLEHSSILFEMAKRHKANLSIALFDI 492

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FKQ+ND +GH  GD V+  LS   +  F +   +GR+GGEEFA     + ++EA + +
Sbjct: 493 DHFKQVNDTWGHEAGDLVLRELSKLALNCFRSSDIIGRIGGEEFAVIMPETDKEEAILAS 552

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNR 254
              RKI+E+++    +   + IT+S GIA+        I+ +   +D ALY AK +GRN 
Sbjct: 553 ERFRKIVESTRFEYENDL-LSITVSIGIAQFNPNTNTTINDLTKISDDALYTAKANGRNM 611

Query: 255 VVCFSD 260
           V C +D
Sbjct: 612 VFCAND 617


>gi|307823061|ref|ZP_07653291.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
 gi|307735836|gb|EFO06683.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
          Length = 512

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 69/173 (39%), Positives = 94/173 (54%), Gaps = 12/173 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           +L I+  R    +  D L+GL N +A+   L         Y+  LS++ +DID+FK IND
Sbjct: 344 KLKIANTR----ALRDTLTGLPNRNAYNERLETELARWKRYHSPLSLIIWDIDHFKNIND 399

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           ++GH  GDKV+  ++ QL        F+ R GGEEF      +  + A ILA  LR+ IE
Sbjct: 400 SYGHKAGDKVLLLIAKQLSDHSRATDFISRFGGEEFTMLLPNTDSKSALILATQLRQTIE 459

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +  N +SG S+ ITIS GI E    +   T   RADQALY AK+ GRNR   
Sbjct: 460 KTGFN-ASGASVAITISCGITEFTDNDTDETAFDRADQALYQAKEQGRNRCCV 511


>gi|330982934|gb|EGH81037.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 267

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 12/182 (6%)

Query: 84  YIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFD 135
           Y+S    +        ++ +++  D L+GL N  +   +L           +  S++  D
Sbjct: 89  YVSISQDVTTRLGREQKLLEIAHSDPLTGLDNRRSAEHTLERQIPAVSMSGKPFSLIICD 148

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK +ND +GHP GD VI  ++  L           R GGEEF      SS ++AA L
Sbjct: 149 IDHFKAVNDRYGHPAGDSVITSVAAILKQRIRLLDVAARWGGEEFLILVPDSSLKQAAEL 208

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A  +RK +E+  I      +  +TIS G+AE    E  +++I RAD+ALY AK+ GRNRV
Sbjct: 209 AERIRKSVESLVIP----ETGSVTISLGVAELSAGETAASLIQRADKALYQAKRLGRNRV 264

Query: 256 VC 257
            C
Sbjct: 265 EC 266


>gi|149181516|ref|ZP_01860011.1| diguanylate cyclase (GGDEF domain) [Bacillus sp. SG-1]
 gi|148850766|gb|EDL64921.1| diguanylate cyclase (GGDEF domain) [Bacillus sp. SG-1]
          Length = 346

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 113/238 (47%), Gaps = 8/238 (3%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL 81
           + P  +M  F +  S      I I  I+   +G+  F  L       + +  +   +  +
Sbjct: 111 WMPIFYMFLFFLLNSRLALLTIAITYIWFLGVGVYKFPELIGTPAATILVQYMFANLVFI 170

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDY 138
           L       +K+ +I    + +L+  D L+GL N      +L       +K+SI++ DID+
Sbjct: 171 LTLFFLQTVKQRYIKAEVMEELANTDYLTGLPNRRKIDQALHQALKKQQKISIIYLDIDH 230

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQIND FGH  GD+V+   +++ + V      +GR GGEEF          EAAILA  
Sbjct: 231 FKQINDTFGHTAGDEVLKEFTNETLEVLKEENMLGRWGGEEFMIILKN-DLNEAAILAEK 289

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +R  I   +          +T S G+      + + T++ RAD+ALY AK SGRN+VV
Sbjct: 290 IRAHIAQHRFEAVG----SLTASFGVTALQEGDTLDTLLNRADKALYKAKNSGRNKVV 343


>gi|317050812|ref|YP_004111928.1| diguanylate cyclase [Desulfurispirillum indicum S5]
 gi|316945896|gb|ADU65372.1| diguanylate cyclase [Desulfurispirillum indicum S5]
          Length = 812

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 98/211 (46%), Gaps = 12/211 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  + +S+   +   + +  YI+  S + E   +  RI  L+  D L+GL N +     L
Sbjct: 599 IYPQWVSISTATDADNAITHYIAIFSDISERKAAEERIQYLAWHDPLTGLPNRALLQDRL 658

Query: 123 GSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                       +L+++F D+D FK IND  GH +GD ++  ++ +L         V R 
Sbjct: 659 ERALVLACRNEHQLAVLFVDLDRFKIINDTLGHHMGDLLLQEVAKRLCACVRQSDTVSRQ 718

Query: 176 GGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF    L  +    AA++A+ + + I   +     G  +H + S GI+    H    
Sbjct: 719 GGDEFVILLLDITGADAAAMVASKIVEAIA--RPFTIDGHCLHTSPSVGISLYPHHGRDK 776

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           ++++ +AD A+Y AK  GRN      D E+ 
Sbjct: 777 ASLLKKADGAMYKAKDMGRNNFQFADDDESE 807


>gi|304405417|ref|ZP_07387076.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9]
 gi|304345456|gb|EFM11291.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9]
          Length = 549

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 73/237 (30%), Positives = 105/237 (44%), Gaps = 13/237 (5%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI----ISITISLLLGY 84
           IY  + F I +   +FIA            Y       ++ S  I     +    +L   
Sbjct: 301 IYMGLPFLIIMLLAMFIARRLAMPFAALADYIGHAADGQSFSPPIKRNHWNREAFVLTQT 360

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQ 141
           + G++      S   ++  + +D L+GLLN  A    +       E  S+V  DID FK 
Sbjct: 361 VLGAVESMRKQS-EELTHAALVDPLTGLLNRRALEEEMSKRAENEEPFSLVVLDIDRFKC 419

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH VGD+V+  L+D L           R GGEEF     GS  +EA  LA  +R 
Sbjct: 420 VNDTLGHQVGDEVLKSLADVLNHSVRAHDMCCRFGGEEFVILLPGSGVEEAFHLAERIRL 479

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
            IE +    +      IT+S GIA    H    +T+   AD+ALY AK++GRNR + 
Sbjct: 480 TIEKTATPANR----VITVSLGIAAYPQHAADTNTLFKLADEALYAAKEAGRNRTML 532


>gi|170728651|ref|YP_001762677.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169813998|gb|ACA88582.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
          Length = 320

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 79/274 (28%), Positives = 129/274 (47%), Gaps = 29/274 (10%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60
           +     D  S WL  ++ +ES     F++    F S      IF       +    P  G
Sbjct: 57  LFEQFDDLPSTWL--KQKMES----VFLLKNRAFISWEQRPYIFK------FKNYRPITG 104

Query: 61  LEYILVENLSLVIISIT------ISLLLGYISGSILKELFI--SYNRISQLSRIDCLSGL 112
               + +N++L+ +S        IS+++  ++   +  L +  +  R+  LS+ D L+ L
Sbjct: 105 RADFMYQNVTLLPLSSLTGQITHISMIVYDVTDVAINRLQLKGANERLEYLSQTDGLTQL 164

Query: 113 LNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N   +             Y ++ S+V FDID FK++NDN+GH +GDKVI  +S  L   
Sbjct: 165 HNRRHWQQCMQREFDRHARYGDETSLVMFDIDDFKKVNDNYGHTIGDKVIQHISHLLKQS 224

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                  GR GGEEF+     +S  +A   A  LRK IE + + +    +I++T+S GI 
Sbjct: 225 LRETDCAGRYGGEEFSVVLAKTSATDALQFAERLRKKIEETAL-VYEDQTINVTVSIGIC 283

Query: 226 ERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   + E     +  AD+ALY AK +GRN+ V +
Sbjct: 284 DIQDELENSGQWLNCADEALYTAKDTGRNKCVIY 317


>gi|39997114|ref|NP_953065.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
 gi|39984004|gb|AAR35392.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
 gi|298506127|gb|ADI84850.1| sensor diguanylate cyclase/phosphodiesterase, PAS domain-containing
           [Geobacter sulfurreducens KN400]
          Length = 799

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 86/188 (45%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             + E      ++ +L+  D L+GL N   F+  L         Y   ++++F D+D FK
Sbjct: 345 RDITERKQVEEQLYRLAHHDTLTGLPNRILFLDRLQQAKAHANRYRHHVALMFLDLDRFK 404

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            IND  GHPVGDK++  ++ +LV        V R+GG+EF    +     ++   +A  +
Sbjct: 405 IINDTLGHPVGDKLLQEVAKRLVDCVREVDTVARIGGDEFTVVLVNIDSVEDVKRVAQKI 464

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            K +  S   +     ++IT S GIA      E    ++ +AD A+Y AK  GRN    +
Sbjct: 465 LKSL--SVPFMVDSFELYITTSIGIALYPGDDENPDNLVKKADIAMYHAKGEGRNTFKFY 522

Query: 259 SDIENNTC 266
               +   
Sbjct: 523 VPKMDANA 530


>gi|117918726|ref|YP_867918.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117611058|gb|ABK46512.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 485

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 67/197 (34%), Positives = 102/197 (51%), Gaps = 14/197 (7%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE 127
           NL+L ++ +TI +LL  IS      L     ++  ++  D L+G  N   F        E
Sbjct: 294 NLALSLL-VTIGILL--ISNMT---LGRYQRKLEVMASTDKLTGAANRQVFEEYFHQALE 347

Query: 128 -------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   +SI+  DID+FK++ND++GH +GD V+  +++ L         + R GGEEF
Sbjct: 348 KAKLSQAPISILLVDIDHFKKVNDSYGHSIGDLVLKTVANLLRSQLKNQDVLCRWGGEEF 407

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                     +AA LA   R +I   ++ + +G  I IT+S G+AE    EP   +I RA
Sbjct: 408 LILVPEQDLSQAAELAEQFRDLISQRELKV-NGVHIAITVSIGVAEYQKLEPAEDLIKRA 466

Query: 241 DQALYVAKKSGRNRVVC 257
           D ALY AK++GRN+VV 
Sbjct: 467 DLALYQAKEAGRNQVVL 483


>gi|320159581|ref|YP_004172805.1| hypothetical protein ANT_01710 [Anaerolinea thermophila UNI-1]
 gi|319993434|dbj|BAJ62205.1| hypothetical protein ANT_01710 [Anaerolinea thermophila UNI-1]
          Length = 680

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 101/202 (50%), Gaps = 17/202 (8%)

Query: 78  ISLLLGYISGSI------LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-- 129
           I+LL  +I+ ++       + +    +R++  +R D L+G  N   F   L    +++  
Sbjct: 331 IALLAQHINATLEALERSAERIRKDQDRLNHQARHDALTGFPNRLYFFERLQQAVQRVQH 390

Query: 130 ------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                 +++F D+D FK +ND + H +GD+V+   +++L        F+ RLGG+EFA  
Sbjct: 391 TPDLRPALIFIDLDGFKMVNDTYDHAMGDRVLRIFAERLKRSLRGSDFIARLGGDEFAIL 450

Query: 184 ALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
              + S  EA  +A  L +I    Q     G  + +++SAGIA+    +    I+  AD 
Sbjct: 451 LEDTVSLDEAVRVAERLIQI--TRQPFDLDGRQVFLSMSAGIAQVLPNQRGEEILRNADM 508

Query: 243 ALYVAKKSGRNRVVCFSDIENN 264
           A+Y AK  G++RV+ F +  + 
Sbjct: 509 AMYAAKGKGKSRVMVFDEEMHQ 530


>gi|332702057|ref|ZP_08422145.1| diguanylate cyclase [Desulfovibrio africanus str. Walvis Bay]
 gi|332552206|gb|EGJ49250.1| diguanylate cyclase [Desulfovibrio africanus str. Walvis Bay]
          Length = 439

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 8/175 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            + +++  + +R   L+  D L+G+ N    ++ L           + L+    D+D+FK
Sbjct: 262 RLRRQIAQAQDRCELLANTDVLTGVPNRRQLMARLEEELARAMRTGQPLACALMDVDHFK 321

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND  GH  GD V+  L+            VGR GGEEF     G+  + A  LA  +R
Sbjct: 322 RVNDTHGHQKGDTVLKVLARIARETVRGYDVVGRFGGEEFLLVLPGTDSEHAMELAERVR 381

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             + +     +S P++ +TIS G+A     + + +++ RAD ALY AK+ GRNRV
Sbjct: 382 LAVHDRLATETSLPNV-VTISLGVATLRPGDNVESLVKRADDALYRAKEKGRNRV 435


>gi|71908438|ref|YP_286025.1| PAS:GGDEF [Dechloromonas aromatica RCB]
 gi|71848059|gb|AAZ47555.1| PAS:GGDEF protein [Dechloromonas aromatica RCB]
          Length = 548

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 59/171 (34%), Positives = 96/171 (56%), Gaps = 8/171 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
              + +LS+ D L+ L N   F       ++    Y  KLS++  DID+FK+IND  GH 
Sbjct: 373 QKELERLSQFDELTNLFNRRHFFSLAKHELNRSSRYRSKLSVMMLDIDHFKRINDGHGHK 432

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+A +  Q+          GR+GGEEFA     +  ++A+I+A  LRK +  + ++
Sbjct: 433 TGDLVLANIGKQIGDSLRDSDIAGRMGGEEFAILLPETDLEQASIMAERLRKQVAETWLD 492

Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           I  G +++ T+S G+A +  ++  +  ++++AD ALY AK SGRN+V C  
Sbjct: 493 IGDGRTLNCTLSIGLATKSDQQIDLENLLHQADTALYAAKNSGRNKVSCAD 543


>gi|86748818|ref|YP_485314.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
 gi|86571846|gb|ABD06403.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
          Length = 753

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 103/224 (45%), Gaps = 14/224 (6%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG---YISGSILKELFISYNRI 100
           +   + L   G+T    L  I+   L+L  +        G    +   +  EL      +
Sbjct: 502 WSVVLTLPVAGITASRLLGIIITLQLALTALFYFFGRERGVRDRVQQLLRSELQERAAAL 561

Query: 101 SQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++ +  D L+GL N   F          +    + LS+V FD+D+FK++ND +GHP GD+
Sbjct: 562 ARQATTDPLTGLHNRLRFNEGLAQELARVRRTGQPLSLVMFDVDHFKEVNDRYGHPTGDQ 621

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  LS            + R GGEEFA   + +    A  +A +LR+++  +  +    
Sbjct: 622 VLIRLSQTAAAQLRQTDLLARWGGEEFAILLVDADLHAAVEVAENLRRLVARTPFDQIG- 680

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               +T S G+AE    E   +++ RAD ALY AK +GRNRV  
Sbjct: 681 ---SVTASFGVAECRPDESADSLLERADAALYRAKSNGRNRVEI 721


>gi|307317852|ref|ZP_07597290.1| response regulator receiver modulated diguanylate cyclase
           [Sinorhizobium meliloti AK83]
 gi|306896614|gb|EFN27362.1| response regulator receiver modulated diguanylate cyclase
           [Sinorhizobium meliloti AK83]
          Length = 455

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 86/175 (49%), Gaps = 9/175 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
            L  S  +  +L+  D L+GL N     + L        +    LSI   DID FK++ND
Sbjct: 278 RLRASVQQTIELAVTDDLTGLHNRRYLENHLKLLIDRATTRGRPLSICITDIDRFKRVND 337

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD V+   ++++           R GGEEF      ++ + AAI+A  LR  +E
Sbjct: 338 THGHDAGDDVLREFANRVRATVRGADLACRFGGEEFVVVMPDTTPEMAAIVAERLRLAVE 397

Query: 205 NSQINISSGPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +I    ++ ++T S GIA  R H +    ++ RAD ALY AK  GRNRVV 
Sbjct: 398 SRGFDIPQAATVLNVTASLGIATLRPHGDTAEALLKRADMALYQAKNGGRNRVVA 452


>gi|70729435|ref|YP_259173.1| sensory box protein [Pseudomonas fluorescens Pf-5]
 gi|68343734|gb|AAY91340.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas
           fluorescens Pf-5]
          Length = 1114

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 16/197 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
            ++   +  L  +  +I  L+  D L+ L N +  +  L         +N + +++F D+
Sbjct: 663 LMTARDVSLLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDL 722

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS------EQ 190
           D+FK IND+ GHPVGD V+  ++ +L         V RLGG+EF     G         +
Sbjct: 723 DHFKHINDSLGHPVGDTVLKIITARLEASVRMEDTVARLGGDEFVVLLSGLEGTRNEVSE 782

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKK 249
           +   LA+ LR+++  S+     G  + +T S G+A    H    + ++ RAD ALY AK 
Sbjct: 783 QVRQLADTLRELL--SEPMFLDGQRLQVTPSIGVALIPDHGSTPTDLLKRADIALYRAKD 840

Query: 250 SGRNRVVCFSDIENNTC 266
           SGRN    F +      
Sbjct: 841 SGRNTTQMFHNTMQKAA 857


>gi|146294937|ref|YP_001185361.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella putrefaciens CN-32]
 gi|145566627|gb|ABP77562.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella putrefaciens CN-32]
          Length = 1216

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           Y   + L + ++      +  YI S + + E  +S  RI  L+  D L+ L N  +  SS
Sbjct: 749 YDFPKWLMMSVVRDESGAVSHYIGSFTDISERKMSEERIHFLAHHDSLTLLPNRLSLQSS 808

Query: 122 LG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L        +   +++++F D+D+FK IND  GH VGD+++  ++ +L  +      V R
Sbjct: 809 LEIVFGEALASQSQIAVMFIDMDHFKNINDTLGHHVGDQLLLEVARRLKNIVDNNEIVAR 868

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           LGG+EF      ++  E A LA  LR  +  SQ  I    S+H + S GI+        +
Sbjct: 869 LGGDEFVVVLSDTNHDEVASLAEALRSGL--SQTYIIDNNSLHSSPSIGISLFPTDGNTV 926

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             ++  AD A+Y AK +GRN    F+   N
Sbjct: 927 EALMKNADMAMYRAKAAGRNNYQFFTAAMN 956


>gi|332185074|ref|ZP_08386823.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
 gi|332014798|gb|EGI56854.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
          Length = 953

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 17/220 (7%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102
            ++  + L    L   + L   +V   +          +L  +      EL ++  ++ +
Sbjct: 738 AWLLGVLLGVAALGGAFWLVTAVVRRRA---------RMLEAMVERRTSELRVANEQLDR 788

Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+ L N    ++ +           E+      D+D+FK+IND  GH  GD+++
Sbjct: 789 LASTDPLTNLANRRTLMAKIETIAQCAQKRGEQFVFALLDVDHFKRINDQHGHGAGDEIL 848

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  +         V R GGEE A     +++ EA  +   +R +I +S + ++ G  
Sbjct: 849 VAIAAAIRSGVRAQDCVARYGGEEIAILFPRTAKSEALGIVERVRSMIASSPM-MAEGQP 907

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           I +T+SAG+A       I+ +I RAD+ALY AK+ GRNRV
Sbjct: 908 IGVTLSAGVAAWRPGRDIADMIRRADEALYRAKRGGRNRV 947


>gi|95930396|ref|ZP_01313133.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133648|gb|EAT15310.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 904

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 11/186 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + E+  S  ++   +  D L+ L N   F   L         +  KL++++ DID FK 
Sbjct: 465 DISEIKRSEEKLQHQAYHDALTNLPNRKLFHDRLSVAVAHARQHKTKLAVIYLDIDNFKY 524

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           IND+ GH  GDK++  +S++L+          RLGG+EF           +  +L   + 
Sbjct: 525 INDSLGHHYGDKLLQQISERLLSCTRQEDTTARLGGDEFIILMPEIEDPHDITVLCRRIL 584

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           K +E    +  SG    + +S G+       +    +I  AD A+Y AK++G+N    F+
Sbjct: 585 KQLEL--PHALSGRDYTVNVSMGVTVFPDDADTPEDLIKNADIAMYRAKEAGKNGYQLFT 642

Query: 260 DIENNT 265
                T
Sbjct: 643 AAMQQT 648


>gi|241761861|ref|ZP_04759947.1| diguanylate cyclase [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241373775|gb|EER63335.1| diguanylate cyclase [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 318

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 101/206 (49%), Gaps = 10/206 (4%)

Query: 58  FYGLEYILVENLSLV-IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           F  +  I+V  L L  +IS  I  L   I+   L EL  +  R+ +L+  D L+GLLN  
Sbjct: 113 FVKIALIIVLALFLYDLISNQIRKLRLMITNKTL-ELQETNLRLKELANTDELTGLLNRR 171

Query: 117 AFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
           AF               ++ S+   DID+FK+INDN GH  GD VI +++ ++       
Sbjct: 172 AFTEMFEKNCAQFSKTKDQFSVFILDIDFFKKINDNEGHLAGDAVIQYIAQKITENIRQQ 231

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
            F  R GGEEF      +  +    +A+ +   I    +    G  I +T+S G+A    
Sbjct: 232 DFAARYGGEEFVIMLPNADMETTCQVASRIGNAISEKPVPY-QGREIPVTVSIGVAVMKE 290

Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255
            +  ++++ RAD+ LY+AK  GRNRV
Sbjct: 291 NDDANSLLERADERLYMAKNQGRNRV 316


>gi|15965047|ref|NP_385400.1| response regulator PleD [Sinorhizobium meliloti 1021]
 gi|307301119|ref|ZP_07580888.1| response regulator receiver modulated diguanylate cyclase
           [Sinorhizobium meliloti BL225C]
 gi|15074226|emb|CAC45873.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Sinorhizobium meliloti 1021]
 gi|306904074|gb|EFN34660.1| response regulator receiver modulated diguanylate cyclase
           [Sinorhizobium meliloti BL225C]
          Length = 455

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 86/175 (49%), Gaps = 9/175 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
            L  S  +  +L+  D L+GL N     + L        +    LSI   DID FK++ND
Sbjct: 278 RLRASVQQTIELAVTDDLTGLHNRRYLENHLKLLIDRATTRGRPLSICITDIDRFKRVND 337

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD V+   ++++           R GGEEF      ++ + AAI+A  LR  +E
Sbjct: 338 THGHDAGDDVLREFANRVRATVRGADLACRFGGEEFVVVMPDTTPEMAAIVAERLRLAVE 397

Query: 205 NSQINISSGPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +I    ++ ++T S GIA  R H +    ++ RAD ALY AK  GRNRVV 
Sbjct: 398 SRGFDIPQAATVLNVTASLGIATLRPHGDTAEALLKRADMALYQAKNGGRNRVVA 452


>gi|330824934|ref|YP_004388237.1| diguanylate cyclase [Alicycliphilus denitrificans K601]
 gi|329310306|gb|AEB84721.1| diguanylate cyclase [Alicycliphilus denitrificans K601]
          Length = 561

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 63/258 (24%), Positives = 109/258 (42%), Gaps = 14/258 (5%)

Query: 12  WLCHEKNLESFSPHTFMIYFSIFFSIFIATV--IFIANIFLFYIGLTPFYGLEYILVENL 69
           W  H K     +   F +    F   F  T    F    F+ Y+  +    +   L   L
Sbjct: 296 WRSHRKADLWMALSFFSVVAVSFIDWFRLTGRSAFEGTYFVTYVIPSTIVVMGGTLASQL 355

Query: 70  SLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SS 121
           +  +  +  ++  L        + L ++  R+ +LS  D L+GL N   F          
Sbjct: 356 ATALKTARELTATLDKRVAERTEALTLANQRLEELSTTDSLTGLANRRHFDDILAKEWQR 415

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEF 180
                  L+++  D+D+FKQ ND +GH  GD  +  ++  L            R GGEEF
Sbjct: 416 ARRLRHPLALLMIDVDHFKQFNDTYGHLAGDDCLRQVAQILKQRLLRGSDTAARFGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIY 238
           A        + A  +A  +R+ +EN  +++    ++H+++S G++          + +I 
Sbjct: 476 AVI-TSMDLEGALHIAELIRQDVENHPVSVDGVDAVHVSVSIGLSALVPDGSRSPAQLIS 534

Query: 239 RADQALYVAKKSGRNRVV 256
            AD+ALY AK++GRN V 
Sbjct: 535 LADEALYRAKRAGRNCVR 552


>gi|90019727|ref|YP_525554.1| hypothetical protein Sde_0078 [Saccharophagus degradans 2-40]
 gi|89949327|gb|ABD79342.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 565

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 11/180 (6%)

Query: 88  SILKELFISYNRISQL---SRIDCLSGLLNH-----SAF--ISSLGSYNEKLSIVFFDID 137
           ++ +E   S  ++ +    +  D L+ L N       AF  +     Y   L++   D+D
Sbjct: 385 TVEEESEKSRAQLEEQRYKATHDPLTSLPNREAYNERAFHELHRFKRYGHPLTLAVCDLD 444

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK+IND FGH  GDKV+  ++  +        FV R GGEEF      +  ++A  + +
Sbjct: 445 HFKKINDTFGHQAGDKVLKLVAQVVSTRLRNVDFVARYGGEEFVLVMPETDAEQAKTVLD 504

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +R  I  +       P + IT+S GI +   ++ + +   RAD+ALY AK +GRN+ V 
Sbjct: 505 KMRAAIAKTPFRFKDSP-VTITMSFGIVQFRGEDSVESAFARADKALYEAKANGRNQCVI 563


>gi|114321226|ref|YP_742909.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227620|gb|ABI57419.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 382

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 119/243 (48%), Gaps = 12/243 (4%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL 80
           SF P   +   ++F       + ++  + L Y  L    G    L     L ++ +   +
Sbjct: 137 SFFPVLTVAMLTVFPLTLREALGYLLPVLLVYTLLEIAVGRTLDLQSLGGLWLLVLVALV 196

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVF 133
               ++G +L  L     R+ + +  D L+GL N  A    +             L+++ 
Sbjct: 197 AAWSVAGQLLMLL-----RLYRQATRDPLTGLFNRRALTEQIERERARFLRTGRPLTVLL 251

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           FD+D FK+IND+ GH VGD+V+   ++ +     T    GR GGEEF AA   ++ ++A 
Sbjct: 252 FDLDRFKRINDHHGHLVGDRVLQVFANVVQQNLRTTDHFGRWGGEEFLAALPETTSEQAR 311

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           ++A  +R+  EN ++ ++ GPS+  T S G+A     E + ++  R D+ALY AK  GRN
Sbjct: 312 VVAERVRQACENERLTLAEGPSLGFTTSIGVATLHRDETLDSLFNRVDEALYNAKAYGRN 371

Query: 254 RVV 256
           RVV
Sbjct: 372 RVV 374


>gi|158336700|ref|YP_001517874.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158306941|gb|ABW28558.1| diguanylate cyclase (GGDEF domain), putative [Acaryochloris marina
           MBIC11017]
          Length = 420

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 11/180 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           K+L  +  ++S ++  D L+GL N   F   L           + LS++  DID+FKQ N
Sbjct: 238 KKLDEANKQLSLIANHDALTGLANRRRFDEYLQQIWKQTQREQQPLSLLICDIDFFKQYN 297

Query: 144 DNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD  +  ++ ++   +      V R GGEEFA     +  +   ++A  LR I
Sbjct: 298 DTYGHLEGDICLRTVAQKIHQTIVRPLDLVARFGGEEFAIVLPNTDLEGGQVVAERLRMI 357

Query: 203 IENSQINIS-SGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I+ SQ+    S  S  +T+S G A         +S++I RADQALY AK+SGR++VV  S
Sbjct: 358 IQKSQLPHRGSSVSEFVTVSIGAATVRSHPHTSVSSLISRADQALYQAKQSGRDQVVALS 417


>gi|94500875|ref|ZP_01307401.1| diguanylate cyclase (GGDEF domain) [Oceanobacter sp. RED65]
 gi|94426994|gb|EAT11976.1| diguanylate cyclase (GGDEF domain) [Oceanobacter sp. RED65]
          Length = 294

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 10/190 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-- 129
           VI   ++S+LL  +  ++ +      + + + +  D L+GL N   F        E++  
Sbjct: 103 VIKPYSLSVLLARVRSALRE--KERLDLMEKWATTDPLTGLYNRRFFFEQAQRELERVQR 160

Query: 130 -----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
                S +  DID+FK++ND +GH VGD V+  L+      F       R GGEEF    
Sbjct: 161 NETDASFIILDIDHFKKVNDEYGHLVGDDVLEGLAKLFKETFRKVDLCCRFGGEEFVICL 220

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +  + A ++A   RK +E    N   GP +H+TIS G++       +  ++ RAD AL
Sbjct: 221 PDTDTEGALLVAERTRKKVEELSFNTEKGP-LHVTISLGVSSANENTTLEDMLKRADDAL 279

Query: 245 YVAKKSGRNR 254
           Y AK++GRNR
Sbjct: 280 YQAKQNGRNR 289


>gi|83313514|ref|YP_423778.1| GGDEF domain-containing protein [Magnetospirillum magneticum AMB-1]
 gi|82948355|dbj|BAE53219.1| FOG: GGDEF domain [Magnetospirillum magneticum AMB-1]
          Length = 578

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 89/177 (50%), Gaps = 9/177 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
            + E       + +L+  D L+G+ N   F+            +   L  +  DID+FK+
Sbjct: 402 DITERKRMEAELRRLATTDVLTGIFNRRHFMEMARIEVDRARRHGRPLVALMLDIDHFKR 461

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GHPVGD  I  L+D    +      +GR+GGEEFA     +    A ++A  LR+
Sbjct: 462 INDTHGHPVGDVAIKALADVCTQIIRHEDVLGRMGGEEFAIVLTETDLDGALLVAERLRQ 521

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            +   +I    G ++  T S G+AER   +  I TI+ RAD ALY AK+SGRN+V  
Sbjct: 522 AVAAIRIPAELG-TVAFTTSIGVAERLEGDATIDTILSRADMALYSAKRSGRNKVAV 577


>gi|260221858|emb|CBA30840.1| hypothetical protein Csp_C25570 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 600

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 9/189 (4%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFF 134
           L        ++L ++  R+  LS +D L+G+ N   F          L    + L++V  
Sbjct: 410 LAQRVEERTRQLQVANERLEALSMVDGLTGIANRRHFDQVLHKEWTRLERAGQPLALVML 469

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D+FK+ ND+FGH  GD+ +  ++  +  V      V R GGEEF   A G+   +A  
Sbjct: 470 DVDWFKRYNDHFGHQAGDECLRAVAQAISGVSRASDLVARYGGEEFVIIAPGTDGPQALQ 529

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGR 252
           +A      +    +         +T+S G+A       + +  ++ +AD ALY AK  GR
Sbjct: 530 MAQRACDAVRALGMPHPLAYEAVVTVSCGVAVTVPGPDDSLENLLGQADDALYEAKAQGR 589

Query: 253 NRVVCFSDI 261
           NRVV    +
Sbjct: 590 NRVVLAEPL 598


>gi|332304894|ref|YP_004432745.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172223|gb|AEE21477.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 382

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 72/277 (25%), Positives = 131/277 (47%), Gaps = 24/277 (8%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60
           M  +   F++  L    +++   P  F++   +   +    ++FI  + LF   L    G
Sbjct: 97  MYPAFLAFMATVLSIYTSMQGHGPVPFIMGMMVIAMLVQGHLLFIFGL-LFCCWLAVSTG 155

Query: 61  LEYILV--ENLSLVIISITISLLLGYISG----------SILKELFISYNRISQLSRIDC 108
           L Y+L   +  S ++   T  L+  +I+           ++L+EL      + +L+  D 
Sbjct: 156 LLYMLPSGQASSPILTCFTTMLIAFFIARLAEKNRVGQFTVLQELHDKNQLLEELAVQDP 215

Query: 109 LSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ L N   F + L         Y   LS++  D+D FKQINDN GH VGD+V+  +++ 
Sbjct: 216 LTKLYNRRYFTNKLEIETARSLRYQHPLSLLIVDVDDFKQINDNDGHLVGDEVLVEIANL 275

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +         V R GG+EF    + +  +++  +AN + + IE+      S     +T+S
Sbjct: 276 ITQQMRADDVVCRYGGDEFVILLVEACAEQSKEIANRICESIEHCSFRRVSAK---VTVS 332

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            G A+    +P+   + +ADQ +Y++KK G+N+V  F
Sbjct: 333 IGYAQYV-GQPLGDFMQQADQMMYMSKKRGKNQVAFF 368


>gi|95928735|ref|ZP_01311481.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfuromonas acetoxidans DSM 684]
 gi|95135080|gb|EAT16733.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfuromonas acetoxidans DSM 684]
          Length = 1288

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 87/188 (46%), Gaps = 9/188 (4%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
            + + +   S  ++  LS  D L+ L N S F       +      +   +++ FD+D+FK
Sbjct: 842  TDISQAKESQEKLDYLSWHDPLTDLPNRSLFCTHLDQAVKHAERKHHSFAVLCFDLDHFK 901

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
             +ND+FGH VGD ++  ++D+L         + RLGG+EF       +      ++A ++
Sbjct: 902  DVNDSFGHLVGDALLRKIADRLRSCLRESDMLARLGGDEFVLLLEDVADSHRVTMMAEEI 961

Query: 200  RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
               ++       +   + +++S GIA    H      ++ RAD ALY AK+ GR R   +
Sbjct: 962  LHQLQQPICLTETDLEVQVSVSVGIAVYPEHGRDALELLQRADSALYRAKQHGRARFAYY 1021

Query: 259  SDIENNTC 266
            ++      
Sbjct: 1022 NEEMTEQA 1029


>gi|289208563|ref|YP_003460629.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
 gi|288944194|gb|ADC71893.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
          Length = 336

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 11/172 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L      + +L+  D L+G+ N   F       ++    YN  LS++F D+DYFK++ND 
Sbjct: 159 LRQQQEELVRLASTDALTGVWNRQKFKTEAEHEVARAERYNLPLSLIFLDLDYFKEVNDR 218

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD ++  +  +L         +GR GGEEF      +    AA+LA  LR+ I +
Sbjct: 219 YGHATGDAILREMCQRLQACLRESDRLGRWGGEEFLILVPHADSDRAALLAEKLRQAIAD 278

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +     +     ++IS G+  R   + +  ++ +AD ALY AK  GRNRV  
Sbjct: 279 TP----AAHGQPMSISLGVVSREPGDALEDLVRKADAALYRAKARGRNRVEV 326


>gi|77920527|ref|YP_358342.1| signal transduction protein [Pelobacter carbinolicus DSM 2380]
 gi|77546610|gb|ABA90172.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pelobacter carbinolicus DSM 2380]
          Length = 1141

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E   +   I  L+  D L+GL N   F+  +         ++E  +++F D+D FK 
Sbjct: 677 DITERKEAEKTIEHLAFHDPLTGLANRLLFMDRIEQAIAHAHRHHESFALMFLDLDRFKT 736

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLR 200
           IND+ GH  GD  +  ++ +L         V R GG+EF     G S E+E  ++A+ + 
Sbjct: 737 INDSLGHSAGDAALKEVAQRLTTCLRETDTVSRFGGDEFNVLLSGPSHEEEIELIAHKIL 796

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           K +        +   + +T S GIA          T++  AD ALY AK  GRN    +S
Sbjct: 797 KSLA--WPYDINDHEVFMTCSIGIASYPKDGREAITLVKNADTALYRAKDLGRNNFQFYS 854

Query: 260 DIENNTC 266
              N   
Sbjct: 855 SSMNARA 861


>gi|319762855|ref|YP_004126792.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|317117416|gb|ADU99904.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
          Length = 561

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 109/258 (42%), Gaps = 14/258 (5%)

Query: 12  WLCHEKNLESFSPHTFMIYFSIFFSIFIATV--IFIANIFLFYIGLTPFYGLEYILVENL 69
           W  H K     +   F +    F   F  T    F    F+ Y+  +    +   L   L
Sbjct: 296 WRSHRKADLWMALSFFSVVAVSFIDWFRLTGRSAFEGTYFVTYVIPSTIVVMGGTLASQL 355

Query: 70  SLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SS 121
           +  +  +  ++  L        + L ++  R+ +LS  D L+GL N   F          
Sbjct: 356 ATALKTARELTATLDKRVAERTEALTLANQRLEELSTTDSLTGLANRRHFDDILAKEWQR 415

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEF 180
                  L+++  D+D+FKQ ND +GH  GD  +  ++  L            R GGEEF
Sbjct: 416 ARRLRHPLALLMIDVDHFKQFNDTYGHLAGDDCLRQVAQILKQRLLRGSDTAARFGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIY 238
           A        + A  +A  +R+ +EN  +++    ++H+++S G++        S   +I 
Sbjct: 476 AVI-TSMDLEGALHIAELIRQDVENHPVSVDGVDAVHVSVSIGLSALVPDGSRSPPQLIS 534

Query: 239 RADQALYVAKKSGRNRVV 256
            AD+ALY AK++GRN V 
Sbjct: 535 LADEALYRAKRAGRNCVR 552


>gi|330963101|gb|EGH63361.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 425

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 63/183 (34%), Positives = 96/183 (52%), Gaps = 12/183 (6%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           +  Y+S    +        ++ +++  D L+GL N  A   +L           +  S +
Sbjct: 237 MTHYVSISQDVTTRLGREQKLLEIAHSDPLTGLDNRRAAEHTLERMINTARISGKPFSFI 296

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK +ND +GHP GD V+  ++  L           R GGEEF      SS ++A
Sbjct: 297 ICDIDHFKSVNDQYGHPAGDSVLKSVAAILKHRIRAVDVAARWGGEEFLILVPDSSLKQA 356

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           A LA+ +RK +EN +I   +GP   +TIS G++E    E  +++I RAD+ALY AK+ GR
Sbjct: 357 AELADRIRKGVENLEIP-EAGP---VTISLGVSELSPGETAASLIQRADKALYQAKRLGR 412

Query: 253 NRV 255
           NRV
Sbjct: 413 NRV 415


>gi|311103803|ref|YP_003976656.1| c-di-GMP phosphodiesterase A [Achromobacter xylosoxidans A8]
 gi|310758492|gb|ADP13941.1| c-di-GMP phosphodiesterase A [Achromobacter xylosoxidans A8]
          Length = 858

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 104/222 (46%), Gaps = 16/222 (7%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112
           IG   FY  E  L ++    ++ + + L       ++  E   +  RI QL+  D L+GL
Sbjct: 388 IGTFGFYFRERRLPDDFHHRLVDVCVYLC------ALALEREEARARIRQLAFYDELTGL 441

Query: 113 LNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N +  ++             ++++++F D+D FKQ+ND  GHP+GD ++  ++ +L  +
Sbjct: 442 PNRNLLLAQAEQAIARAEPERKRVAVLFLDLDRFKQVNDTLGHPIGDALLRDVAQRLRRL 501

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                 VGRL G+EF               A  +  ++  +Q     G +++ ++S GI+
Sbjct: 502 ARAADIVGRLSGDEFVMLMPDFEHGRLTAAAEHV--LVALAQPFSVGGITLNPSVSIGIS 559

Query: 226 ERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
                   + T++  AD A+Y AK +GRNR+  FS   N   
Sbjct: 560 VFPENGRDMDTLLRHADMAMYQAKTAGRNRISFFSAEMNRQA 601


>gi|227821649|ref|YP_002825619.1| response regulator PleD [Sinorhizobium fredii NGR234]
 gi|227340648|gb|ACP24866.1| two component response regulator [Sinorhizobium fredii NGR234]
          Length = 455

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 60/175 (34%), Positives = 85/175 (48%), Gaps = 9/175 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           +L  S     +L+  D L+GL N           I    +    LSI   DID FK +ND
Sbjct: 278 QLRASVQHTIELAITDDLTGLHNRRYLDSHLKLLIDRARARGRPLSICITDIDRFKLVND 337

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+V+   + ++           R GGEEF      ++ + AAI+A  LR ++E
Sbjct: 338 THGHDAGDEVLREFARRVRATVRGADLACRFGGEEFVIVMPDTTPEMAAIVAERLRLMVE 397

Query: 205 NSQINISSGPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                IS G ++ ++T S GIA  R   +    ++ RAD ALY AK +GRNRVV 
Sbjct: 398 GRAFGISQGDTVLNVTASLGIATLRPGDDTPEALLKRADTALYEAKNNGRNRVVA 452


>gi|226941473|ref|YP_002796547.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Laribacter hongkongensis HLHK9]
 gi|226716400|gb|ACO75538.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Laribacter hongkongensis HLHK9]
          Length = 839

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +  ++  R+  L+  D L+ L N +  +  LG          ++++++F D+D FK
Sbjct: 391 SDITQRKLNEERLHYLANHDPLTDLPNRTLLMERLGAALTRAHRQGKRVALMFLDLDRFK 450

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH VGDK++  ++ +L         V RLGG+EF         ++   +A   +
Sbjct: 451 FINDTLGHAVGDKLLQTVASRLTGSLRASDTVARLGGDEFNIVL--EDIRDLRGVAQTAQ 508

Query: 201 KIIENSQ-INISSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCF 258
           K+I+  Q +    G  +++T S GIA          ++   AD A+Y AK+ G+N    F
Sbjct: 509 KLIDRVQGMVTLDGHDVYVTASVGIAIYPDDGSTPEVLRMNADTAMYRAKERGKNNFQFF 568

Query: 259 SDIENNT 265
           +   N +
Sbjct: 569 TADMNAS 575


>gi|253701315|ref|YP_003022504.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. M21]
 gi|251776165|gb|ACT18746.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. M21]
          Length = 704

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 52/200 (26%), Positives = 88/200 (44%), Gaps = 23/200 (11%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             + E   +  +I  L+  D L+GL N   F+  L         ++  L+++F D+D FK
Sbjct: 250 QDITERKHAEEQIRLLAYYDALTGLPNRRFFLQQLEQALVFANRHDRMLAVLFLDLDRFK 309

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG------------RLGGEEFAAAALGSS 188
            +ND  GH VGD+++  ++D+L+        +             RLGG+EF        
Sbjct: 310 LVNDTLGHGVGDRLLQDVADRLLRCVRRGDCLARADEECPPSLVSRLGGDEFTIML--CD 367

Query: 189 EQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYV 246
            +    +A   R+I+E   +  S  G  + ++ S GI+         S +I  AD A+Y 
Sbjct: 368 IEHFQDVAKIARRILEAVSVPYSLEGQEVFVSTSIGISLYPFDATTASDLIRNADGAMYQ 427

Query: 247 AKKSGRNRVVCFSDIENNTC 266
           AK+ GRN    + +  N   
Sbjct: 428 AKEQGRNGYQIYDESMNAKA 447


>gi|289208601|ref|YP_003460667.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
 gi|288944232|gb|ADC71931.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
          Length = 385

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 113/240 (47%), Gaps = 15/240 (6%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
             + F++F   VI I    L   G    +     L    S V ++     L+  +   + 
Sbjct: 146 LGLGFNLFALAVIAITPTLLHAAG----FVQHLNLAVYHSYVWVAFLPFALILTLVEFLY 201

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
             L+ +   ++Q +  D L+GL N   F       ++      + +S++F DID+FKQ+N
Sbjct: 202 WRLYETRIELTQQAERDPLTGLPNRRHFFRVAPRQLAIANRTGQPVSVLFVDIDHFKQVN 261

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH +GD+ +  ++  L   F     V R GGEEF     G+  ++A  +A  LR  I
Sbjct: 262 DTHGHAMGDRALCHVARLLQATFRESDLVTRHGGEEFLVWLQGTGPRDAEQVAEQLRARI 321

Query: 204 ENSQINI--SSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFS 259
           +   +    S  P I +T+S GIA    + P  + T++ RAD A+  AK+ GRN+VV  S
Sbjct: 322 DREPLAEGGSGHPPIPLTVSIGIASHIPESPEALDTLLTRADDAMSTAKRQGRNKVVLAS 381


>gi|167629923|ref|YP_001680422.1| predicted signal transduction domain protein [Heliobacterium
           modesticaldum Ice1]
 gi|167592663|gb|ABZ84411.1| predicted signal transduction domain protein [Heliobacterium
           modesticaldum Ice1]
          Length = 853

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 86/185 (46%), Gaps = 10/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           S + E   +  RI   +  D L+ L N   FI  L     +       L+++F D+D FK
Sbjct: 373 SDITEDKRNQERIKHQAYHDALTDLPNRLLFIDRLTQAIAQATRNCYMLAVLFLDLDRFK 432

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
           QIND +GH +GD ++  ++ +L         V RLGG+EF        S ++AA +A  +
Sbjct: 433 QINDTYGHALGDLLLQGVAGRLRRAVRDSDTVARLGGDEFTILLPQIGSVEDAAKVAQKI 492

Query: 200 RKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +     +    PS  IT S GIA      E   T+++ AD A+Y AK  GRN    +
Sbjct: 493 LASLRQ-PWSFEGIPSFCITTSIGIAVCPTDGEEAETLMHNADAAMYRAKAQGRNHYQLY 551

Query: 259 SDIEN 263
           +   N
Sbjct: 552 TPELN 556


>gi|320334267|ref|YP_004170978.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
 gi|319755556|gb|ADV67313.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
          Length = 802

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 92/181 (50%), Gaps = 11/181 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQIND 144
           EL  S  R++  ++ D L+GL N + F                +L+++F D+D FK +ND
Sbjct: 371 ELEASQARLAHQAQHDVLTGLPNRALFQDRVERGIASAAREGGRLAVMFIDLDGFKAVND 430

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
             GH  GD+++  ++ +L         V RLGG+EF    LG ++ Q+AA +A  + + +
Sbjct: 431 TLGHAAGDELLREVASRLQDNVRRNDTVARLGGDEFTVMLLGVNTAQDAASVAQKILRAL 490

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
               I+++ G + H++ S G++         + +   AD A+Y AK+ G+N +  ++   
Sbjct: 491 RE-PIHLADGAA-HVSGSIGVSLYPQDGADATDLQRHADIAMYRAKQGGKNNITFYAPEM 548

Query: 263 N 263
           N
Sbjct: 549 N 549


>gi|312962062|ref|ZP_07776559.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Pseudomonas fluorescens
           WH6]
 gi|311283872|gb|EFQ62456.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Pseudomonas fluorescens
           WH6]
          Length = 1092

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 16/197 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
            ++   +  L  +  +I  L+  D L+ L N +  +  L         +N + +++F D+
Sbjct: 641 LLTARDVSLLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDL 700

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS------EQ 190
           D+FK IND+ GHPVGD V+  ++ +L         V RLGG+EF     G         +
Sbjct: 701 DHFKHINDSLGHPVGDTVLKIVTARLEASVRMEDTVARLGGDEFVVLLSGLDGSRTQVSK 760

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKK 249
           +   L + LR+++  S+     G  + +T S G+A    H    + ++ RAD ALY AK 
Sbjct: 761 QVQALTDTLRELL--SEPMFLDGQRLQVTPSIGVALIPDHGSTPADLLKRADIALYRAKD 818

Query: 250 SGRNRVVCFSDIENNTC 266
           SGRN    F +    T 
Sbjct: 819 SGRNTTQMFHNSMQRTA 835


>gi|226225891|ref|YP_002759997.1| putative two-component response regulator [Gemmatimonas aurantiaca
           T-27]
 gi|226089082|dbj|BAH37527.1| putative two-component response regulator [Gemmatimonas aurantiaca
           T-27]
          Length = 491

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 10/193 (5%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNE 127
           ++  + +       +++       R+ QL++ D L+ LLN  A        +     Y+ 
Sbjct: 299 AVITAAVAVIQRAQMVESTMADNARLEQLAQTDPLTQLLNRRALTERITAEMERALRYDS 358

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            L+++  D+D+FK++ND +GH VGD V+  +   L           R GGEEF      +
Sbjct: 359 TLALLMIDLDHFKKVNDTYGHLVGDDVLRDVGQLLGHTIRGSDITARYGGEEFLVLLPET 418

Query: 188 SEQEAAILANDLRKIIENSQINISS-GPSIHITISAGIAERCHK--EPISTIIYRADQAL 244
            +  A   A  +R  +E       S    + +T S G+A       E +  +  RAD AL
Sbjct: 419 DDAGAVAFAERIRVAMEEHPFARDSMAEPLKLTASIGVAVFPAARIENVEDLFARADAAL 478

Query: 245 YVAKKSGRNRVVC 257
           Y AK  GRNRV  
Sbjct: 479 YRAKAEGRNRVRM 491


>gi|146341429|ref|YP_001206477.1| response regulator PleD [Bradyrhizobium sp. ORS278]
 gi|146194235|emb|CAL78257.1| response regulator PleD (with diguanylate cyclase and response
           regulator receiver domains) [Bradyrhizobium sp. ORS278]
          Length = 473

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 59/197 (29%), Positives = 92/197 (46%), Gaps = 14/197 (7%)

Query: 81  LLGYISGSILKELFISYNRIS-----QLSRIDCLSGLLNHSAFISSL-------GSYNEK 128
           LL      I K  +  + R +     +++  D L+GL N     + L        S  + 
Sbjct: 264 LLARARTQIRKRRYTDHLRDNVQNSIEMAITDALTGLHNRRYMETHLSTLADQAASRGKP 323

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+++  D+DYFK IND +GH  GD V+   + ++           R GGEEF      + 
Sbjct: 324 LALMMLDLDYFKSINDTYGHDAGDDVLREFAMRVRKSIRGIDLACRYGGEEFVIVMPETD 383

Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCH-KEPISTIIYRADQALYV 246
              A ++A  LR+ + N   ++  G   I +T+S GI+      EPI+ ++ RAD ALY 
Sbjct: 384 LHVAGMVAERLRRSVANEPFSVHKGEKRIDVTVSIGISTLEQKGEPIADVMKRADTALYR 443

Query: 247 AKKSGRNRVVCFSDIEN 263
           AK  GRNR V  + +  
Sbjct: 444 AKNEGRNRAVAIAPVHQ 460


>gi|120556751|ref|YP_961102.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120326600|gb|ABM20915.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 405

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 8/168 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
            + +S+++RID L+GL N  AF                  +I+  D+D+FK++ND +GH 
Sbjct: 219 QDELSEIARIDPLTGLYNRRAFDECCDIEFSRAQRSGAPFAIIMCDLDHFKRVNDRYGHH 278

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+V+   ++ L         V R GGEEF     G   ++   +A  LR    ++QI 
Sbjct: 279 VGDEVLRRFANTLKEHIRKHDVVARFGGEEFVLLLPGKDTEQGLEVAEKLRAKTADTQIT 338

Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
           I     + ++ S G+A     +   S +++RAD ALY AKK GRNRVV
Sbjct: 339 IGDDVCLTLSASFGVAHYDSSDREWSAVLHRADNALYAAKKQGRNRVV 386


>gi|88812240|ref|ZP_01127491.1| putative signal transduction protein [Nitrococcus mobilis Nb-231]
 gi|88790491|gb|EAR21607.1| putative signal transduction protein [Nitrococcus mobilis Nb-231]
          Length = 504

 Score =  205 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 13/190 (6%)

Query: 81  LLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           LL + S +  K  EL  +  ++ +++R D L+G  N   F   L         + + LS+
Sbjct: 313 LLQHASEADRKASELERTAVQLQEMARRDPLTGAYNRRYFDEMLSQRFEAATRHQQPLSL 372

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
            F D+D+FK +ND +GH  GD V+A ++  +        F+ R GGEEF      ++ + 
Sbjct: 373 GFLDLDHFKMVNDRYGHQAGDVVLAGVAKAISSRLRGDDFLARYGGEEFVLLLPNTNLEL 432

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI----STIIYRADQALYVA 247
           A  +   +R  IE  +  ++    I IT+SAG A       I      +I  AD+ALY+A
Sbjct: 433 AQRILERIRAHIETEEHTVAPEHMIRITLSAGAAAHMDGSRISNKLDDLIRAADRALYLA 492

Query: 248 KKSGRNRVVC 257
           K+ GRNRV  
Sbjct: 493 KRQGRNRVEV 502


>gi|295700649|ref|YP_003608542.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1002]
 gi|295439862|gb|ADG19031.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1002]
          Length = 316

 Score =  205 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 64/202 (31%), Positives = 103/202 (50%), Gaps = 11/202 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           L+    +V + +TIS +       + +E   +  ++ + +  D L+G+ N   F + L  
Sbjct: 113 LMRGREVVAVCVTISDVTH--VSIVQREREEAVAKLQEYANRDGLTGIANRRFFEARLRD 170

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   +S++ FD+D+FKQIND FGH VGD V+  ++ ++  V       GR GG
Sbjct: 171 EFTRWQRYGGDMSMLLFDLDHFKQINDQFGHGVGDTVLRVMAQRVAGVVRAQDTFGRFGG 230

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STI 236
           EEFA     +   +A ++A  +R++IE + + +  G S+ +T S G A      P    +
Sbjct: 231 EEFALLLPCTPLDDAMLVAEKIRRVIEETPVELI-GTSVPVTASLGGASAREGLPAYDVL 289

Query: 237 IYRADQALYVAKKSGRNRVVCF 258
           I  AD ALY AK+ GRN  V F
Sbjct: 290 INEADAALYRAKRQGRNCAVAF 311


>gi|39937055|ref|NP_949331.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009]
 gi|39650912|emb|CAE29435.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris
           CGA009]
          Length = 382

 Score =  205 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 9/182 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDI 136
            +  S + ++  +   + +L+  D ++G+ N   F+       S    Y   +S +  DI
Sbjct: 178 MLIYSDVTDIVRNAEELERLATTDGMTGVYNRRHFLTLADREWSRARRYERPMSFLMIDI 237

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK IND FGH VGD++I  L+            + RLGGEEFA     +   +A ++A
Sbjct: 238 DYFKAINDGFGHQVGDEMIVHLARLARDCKRDCDVLARLGGEEFALLLPETDLAQAEVVA 297

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             LR+ +  + + + +  +I  T+S G+A      + +S ++  ADQALY AK +GRNRV
Sbjct: 298 ERLRREVAGNAL-VVASHAIPATVSIGVATALPGMKDVSDLMKAADQALYDAKHAGRNRV 356

Query: 256 VC 257
           +C
Sbjct: 357 IC 358


>gi|156306248|ref|XP_001617570.1| hypothetical protein NEMVEDRAFT_v1g225972 [Nematostella vectensis]
 gi|156194615|gb|EDO25470.1| predicted protein [Nematostella vectensis]
          Length = 283

 Score =  205 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + EL  +  ++ QL+  D L+GL N + F             +    +++F D+D FK
Sbjct: 85  SDISELKEAEQKLEQLAHYDPLTGLPNRTLFYDRFASSLGRSARHKRHTALLFIDLDRFK 144

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND  GH  GD V+  ++ ++         + RLGG+EF     G  S ++  ++A  +
Sbjct: 145 PINDMHGHQTGDAVLIEVARRIQKHIRPDDTLSRLGGDEFTVIIDGLDSSEKVQLIAQRM 204

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +  E     +     + I+ S GIA          T++  AD A+Y  K+ GRN  + F
Sbjct: 205 LQ--ELKAPILYDEKQLDISASIGIALYPKDGLDAQTLLKHADTAMYHVKERGRNAFMFF 262

Query: 259 SDIENNTC 266
            +  N   
Sbjct: 263 DEALNAQA 270


>gi|157377236|ref|YP_001475836.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157319610|gb|ABV38708.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 610

 Score =  205 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 57/180 (31%), Positives = 98/180 (54%), Gaps = 11/180 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL  +  ++++ + +D L+G+ N +AF   L             ++I+  DID FK I
Sbjct: 429 LRELNEANQKLTEQATVDSLTGVKNRAAFDKRLLAEGRLSRRQQTPMAILMLDIDRFKSI 488

Query: 143 NDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD+ +  ++  L          V R GGEEFA     ++E+ A ++A  +RK
Sbjct: 489 NDTYGHLAGDQTLRLIAQTLKENLKRPADLVSRFGGEEFAIILPNTAEEGAVLVAELIRK 548

Query: 202 IIENSQINISSGPSIHITISAGI-AERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
            +    I+  +  +I +TIS G+ AE  + E   + ++ +AD+ALY AK +GRN V+ ++
Sbjct: 549 TVAELPIHWEN-KTIPLTISIGVSAEIINTENQPNNLLEQADKALYRAKNNGRNCVMVYT 607


>gi|126664680|ref|ZP_01735664.1| two-component response regulator protein [Marinobacter sp. ELB17]
 gi|126631006|gb|EBA01620.1| two-component response regulator protein [Marinobacter sp. ELB17]
          Length = 379

 Score =  205 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 78/267 (29%), Positives = 123/267 (46%), Gaps = 24/267 (8%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATV--------IFIANIFLFYIGLT---- 56
           LS+++ H             +    FF + I +V         F+  + LF+  L     
Sbjct: 102 LSLFVAHALYSPDTLYQMSNVLMIGFFGVSILSVRGLEQWRTFFVIPLMLFFAALAIVDL 161

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
            F  L   L + L ++ + + +S  L      + +  F+S  ++  L+  D L+GLLN  
Sbjct: 162 EFKQLIPFLFDPLVMIFLGMVVSGSLS----QLRRSEFLSRQQLKSLASTDQLTGLLNRH 217

Query: 117 AFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
           A   SL         +    S++  D+D FK++ND++GH VGD+V+   +++L       
Sbjct: 218 AIHKSLEQLVARHARHGHPFSLILGDLDKFKRVNDSYGHNVGDEVLIETANRLQDHVRAG 277

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
             + R GGEE       +    A  +A  LR  I  + +  + G SI  TIS G+    +
Sbjct: 278 DILCRWGGEELLVVLPDTERDSALAVAEKLRCAIGEAPMT-AGGHSIEQTISFGVTCYHN 336

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV 256
            E I T I RAD ALY+AK+ GRNRVV
Sbjct: 337 GEHIDTTIMRADSALYLAKQGGRNRVV 363


>gi|53804274|ref|YP_114093.1| sensory box protein [Methylococcus capsulatus str. Bath]
 gi|53758035|gb|AAU92326.1| sensory box protein/GGDEF domain protein [Methylococcus capsulatus
           str. Bath]
          Length = 819

 Score =  205 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 57/196 (29%), Positives = 91/196 (46%), Gaps = 16/196 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           ++   + E   +   I QL+  D L+GL N   F+  L            + S++F D+D
Sbjct: 374 VTFVDISERKRAQQEIEQLAYFDPLTGLPNRRLFLERLNQAIGESCVNGSRCSLLFVDLD 433

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ------E 191
            FK +ND  GH VGD+++  ++++L    G    V RLGG+EF     G  E+       
Sbjct: 434 RFKHLNDARGHTVGDQLLRKVAERLSEGVGRGGMVARLGGDEFVILLNGLDEEFESACRR 493

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
              +A +LR I++     +SSG   ++T S G A      +    ++  AD A+Y AK S
Sbjct: 494 TMDVAENLRVILQR-PFVLSSGQH-YVTASIGTAIYPFDTDSADDLLKAADMAMYEAKAS 551

Query: 251 GRNRVVCFSDIENNTC 266
           GRN V  ++       
Sbjct: 552 GRNTVRAYASTMQAAA 567


>gi|262373774|ref|ZP_06067052.1| GGDEF family protein [Acinetobacter junii SH205]
 gi|262311527|gb|EEY92613.1| GGDEF family protein [Acinetobacter junii SH205]
          Length = 396

 Score =  205 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 128/279 (45%), Gaps = 27/279 (9%)

Query: 10  SIWLCHEKNL-ESFSPHTFMIYFS-------------IFFSIFIATVIFIANIFLFYIGL 55
           ++ LCH   L  SFSP T + Y S             I+ ++  AT+  +   FL   G+
Sbjct: 116 TVLLCHTGYLIGSFSPATMVTYASVVGVGLILFDRRMIYCALIPATIAMLFCNFLSMYGI 175

Query: 56  ---TPFYGLEYILVENL------SLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
               P +  E +    +      S+    + I L   Y+   +L++       I  LSR+
Sbjct: 176 LQYAPIFNPEILNQAEMHPFWVGSMFFFLLPILLACLYLFEILLQQWRTRETAIQALSRL 235

Query: 107 DCLSGLLNHSAFISSLGSYNEKL----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+ ++N  +  + L   N+++    S++  D+D+FK IND+FGH +GD+V+  ++  L
Sbjct: 236 DPLTNVMNRRSISNQLEKLNQQVDQLYSVILLDLDHFKNINDHFGHSLGDEVLVNVAKCL 295

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                    +GR GGEEF      +S  +A  +A   R  I              ++ S 
Sbjct: 296 TENLRDQDMIGRFGGEEFIILLPNNSTTQAKSIAERCRIAISQLSFISEDHQEFSVSASF 355

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           GI+   +      II +ADQALY  K +GRN+V  FS++
Sbjct: 356 GISSSQNASESHLIISQADQALYAVKANGRNQVKIFSEL 394


>gi|78059845|ref|YP_366420.1| diguanylate cyclase [Burkholderia sp. 383]
 gi|77964395|gb|ABB05776.1| diguanylate cyclase (GGDEF domain) [Burkholderia sp. 383]
          Length = 467

 Score =  205 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 104/245 (42%), Gaps = 9/245 (3%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL 80
           + S   F++        ++A  IF A  FL   G+   +       +  S   +   +  
Sbjct: 223 ALSSLAFILGRPWNHMWWLAHAIFAAGFFLLSFGVVQAFQTTRSFSKIYSQAELFARLRE 282

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVF 133
            +   +   L+ L  +  ++  L+  D L+G  N   FI                 S++ 
Sbjct: 283 AMAR-TERALQALQRTNEKLEHLAATDPLTGATNRRQFIESVEAEIHRAKRNGAPFSLLA 341

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D+FK IND++GH  GD+V+    D+ V        V R+GGEEF      ++   A 
Sbjct: 342 LDLDHFKAINDSYGHQAGDQVLQRFVDKCVDAIRPYDGVARVGGEEFMVLLPQAALDTAQ 401

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
            +   +R  I  +      G  I +T+S G +E     E I  I+ +AD+ LY AK  GR
Sbjct: 402 SIGERIRAAIAGAPFEAGIGEPIKVTVSVGASEFGRDGETIDAILRKADERLYRAKHLGR 461

Query: 253 NRVVC 257
           N+VV 
Sbjct: 462 NQVVA 466


>gi|254448481|ref|ZP_05061941.1| diguanylate cyclase [gamma proteobacterium HTCC5015]
 gi|198261864|gb|EDY86149.1| diguanylate cyclase [gamma proteobacterium HTCC5015]
          Length = 595

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 58/187 (31%), Positives = 83/187 (44%), Gaps = 11/187 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVF 133
           LL          L  +  ++ +LS  D L+GL N  +    L             LS + 
Sbjct: 399 LLEERVKERTSALREANEKLEKLSNTDSLTGLNNRRSLDELLAMEVKRTCRTGAPLSAMM 458

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            DID FK  ND  GH VGD  +  ++  +          VGR GGEEF      +    A
Sbjct: 459 MDIDRFKAFNDTHGHQVGDACLKAVAGVIASTAQRPSDVVGRYGGEEFCVLLPDTPLDGA 518

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKS 250
            I+A  +R  +EN    +S G  + +TIS G++E   C  +    ++  AD+ALY AK +
Sbjct: 519 QIIAERIRAAVENLDFTVS-GQRVPVTISIGVSELTYCASDSGKALVEAADEALYSAKSA 577

Query: 251 GRNRVVC 257
           GRN V  
Sbjct: 578 GRNCVRL 584


>gi|326797138|ref|YP_004314958.1| diguanylate cyclase with PAS/PAC and GAF sensors [Marinomonas
           mediterranea MMB-1]
 gi|326547902|gb|ADZ93122.1| diguanylate cyclase with PAS/PAC and GAF sensors [Marinomonas
           mediterranea MMB-1]
          Length = 607

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 62/181 (34%), Positives = 90/181 (49%), Gaps = 8/181 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
            S+  E  ++  ++ + +  D L+GL+N   F              N  LSI+  DID F
Sbjct: 413 ASVAIENRLAQRKLEEQAFYDHLTGLVNRRRFFELAEVSLQESIEQNYPLSILMLDIDRF 472

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND FGH  GD+V+  L+     + G    VGR GGEEF      S  + AA LA  L
Sbjct: 473 KEINDRFGHETGDRVLQALARCASSLVGKNDVVGRFGGEEFTILLPQSDRKRAASLAKTL 532

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           R+ +   +   S+G  +  T S G+     K   I  ++ +AD ALY AK +GRN VV +
Sbjct: 533 RQALSELRTPSSTGIDVQFTASFGVVCNDAKNRSIDDLLSKADHALYQAKGNGRNCVVSY 592

Query: 259 S 259
           +
Sbjct: 593 T 593


>gi|291614023|ref|YP_003524180.1| periplasmic/7TM domain sensor diguanylate cyclase [Sideroxydans
           lithotrophicus ES-1]
 gi|291584135|gb|ADE11793.1| periplasmic/7TM domain sensor diguanylate cyclase [Sideroxydans
           lithotrophicus ES-1]
          Length = 570

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 75/235 (31%), Positives = 111/235 (47%), Gaps = 18/235 (7%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
            F+ FF +    V  +A       G  PF    +   E   LVI +  ++L L     + 
Sbjct: 343 LFATFFGMLGVGVTALA-----VWGKIPFRPYTFHAAE-FGLVIEATLLALGLS----NW 392

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQI 142
           ++E   +     Q++R+D L+ L N  AF+        + G +   +S+V  DID+FK I
Sbjct: 393 MRENRDALYEAEQVARLDALTHLNNRRAFMELALPYASTAGRHERPMSLVMMDIDHFKSI 452

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD V+  ++D L     T   V R GGEEF      +  ++A   A  LR+ 
Sbjct: 453 NDQYGHQTGDLVLTAVADLLKNFSRTSDIVARWGGEEFILLLPETGLKQAINHAERLRQA 512

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I   +I +    SI +T S GIA          +I +AD  LY AK+SGRN+V C
Sbjct: 513 IAEFRIPVGE-TSISLTASFGIAAHVANLSFDKMIEQADVQLYEAKRSGRNKVCC 566


>gi|24375935|ref|NP_719978.1| GGDEF domain-containing protein [Shewanella oneidensis MR-1]
 gi|24350920|gb|AAN57422.1|AE015878_4 GGDEF domain protein [Shewanella oneidensis MR-1]
          Length = 485

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 11/193 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------ 125
           + +S+ +++ + +IS      L     ++  ++  D L+G  N   F             
Sbjct: 295 LALSLVVTIGILFISNMT---LGRYQRKLEIMASTDKLTGAANRQVFEEYFHQALDKAKL 351

Query: 126 -NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
               +SI+  DID+FK++ND++GH VGD V+  +++ L         + R GGEEF    
Sbjct: 352 SQTSISILLIDIDHFKKVNDSYGHSVGDLVLKTVTNLLRSQLKPQDILCRWGGEEFLVLL 411

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
                  AA LA   R  I   ++ + +G  I IT+S G+AE    EP   +I RAD AL
Sbjct: 412 PEMDLSRAAELAERFRDSISQRELKV-NGVHIAITVSIGVAEYQKLEPAEDLIKRADLAL 470

Query: 245 YVAKKSGRNRVVC 257
           Y AK++GRN+VV 
Sbjct: 471 YQAKEAGRNQVVL 483


>gi|325271650|ref|ZP_08138151.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas sp. TJI-51]
 gi|324103222|gb|EGC00568.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas sp. TJI-51]
          Length = 1098

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 16/197 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
            ++   + +L  +  +I  L+  D L+ L N +  +  L         +N + +++F D+
Sbjct: 641 LLTARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDL 700

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS------EQ 190
           D+FK IND+ GHPVGD V+  ++ +L         V RLGG+EF     G        E 
Sbjct: 701 DHFKHINDSLGHPVGDAVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSRELVEA 760

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKK 249
           +   LA+ LR+++   +     G  + +T S G+A    H    + ++ RAD ALY AK 
Sbjct: 761 QVRELADTLRELLA--EPMSLDGQRLQVTPSIGVALIPDHGATPADLLKRADIALYRAKD 818

Query: 250 SGRNRVVCFSDIENNTC 266
           SGRN    F        
Sbjct: 819 SGRNTTQLFHTTMQKAA 835


>gi|88798395|ref|ZP_01113980.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Reinekea sp. MED297]
 gi|88778835|gb|EAR10025.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Reinekea sp. MED297]
          Length = 723

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 95/190 (50%), Gaps = 11/190 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           I+   + E   +  ++++L++ D L+GL+N +AF       +S    + + L+++F D+D
Sbjct: 268 IAFQDITERRRTEEQLARLAQYDALTGLVNRNAFNGLLKKALSRSARHEQPLALLFIDLD 327

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA 196
            FK INDN GH +GD ++  ++ +L         +GRLGG+EF        + ++AA ++
Sbjct: 328 QFKTINDNHGHEIGDSLLQEVAMRLTDCVRNGDIIGRLGGDEFVIMLESLQATKDAARVS 387

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             +   +E        G  I I  S GIA           ++  AD A+Y +K+ GRNR 
Sbjct: 388 QSVLDALEA--PFTIRGHQIFIGASIGIAVYPDSALTARELLRCADIAMYRSKEEGRNRY 445

Query: 256 VCFSDIENNT 265
             F+D    +
Sbjct: 446 RFFTDEMQES 455


>gi|114321822|ref|YP_743505.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228216|gb|ABI58015.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 840

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + +  +  +  +I QL+  D L+ L N       L         + ++L+++F D+D+FK
Sbjct: 389 TDITHIRENERQIRQLAYYDPLTRLPNRRLLDDRLSLAIKHAHRHRQRLAVMFIDLDHFK 448

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
           Q+ND  GH VGD+++  +S++L         + RLGG+EF A      E  EA  +   L
Sbjct: 449 QVNDTLGHAVGDELLLRVSERLREHLREDDTLARLGGDEFLALLPDLQEVDEAIRVTQRL 508

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            + I  SQ          +  S G++      E    +I  AD A+Y +K  GRN    +
Sbjct: 509 IEAI--SQPYTIGDHDFRVGCSIGLSLYPDDGESPDALIRNADGAMYRSKTEGRNTYRLY 566

Query: 259 SDIENNTC 266
           +   +   
Sbjct: 567 APEMDTRA 574


>gi|319787845|ref|YP_004147320.1| diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466357|gb|ADV28089.1| diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1]
          Length = 438

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 63/217 (29%), Positives = 95/217 (43%), Gaps = 22/217 (10%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLS 110
           +Y+G+   +    +L   L L I          Y +  I   L     R    +  D L+
Sbjct: 234 WYLGILGVWLAGIVLYALLQLRI----------YRAERI--SLQSEAERYRTRATTDPLT 281

Query: 111 GLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
             LN   F                   +++  DID+FK++ND+ GH  GD+V+  L+  L
Sbjct: 282 LTLNRHGFEQRWARLPAGSSVAPGHAQALLVLDIDHFKRVNDSCGHDTGDRVLHELAAVL 341

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                   ++ R GGEEF     G    + A +A DLR+ +E        G  + +T+S 
Sbjct: 342 RRQLRPGDWLVRWGGEEFVVLLPGVRTDQVAGIAEDLRRAVERHPFEH--GVPVPVTVSL 399

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           G+A R   E    +  RAD+ALY AK++GRNRVV   
Sbjct: 400 GVALRGPDEGFEALFKRADEALYEAKRAGRNRVVFAD 436


>gi|312958185|ref|ZP_07772708.1| diguanylate cyclase [Pseudomonas fluorescens WH6]
 gi|311287616|gb|EFQ66174.1| diguanylate cyclase [Pseudomonas fluorescens WH6]
          Length = 687

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 59/186 (31%), Positives = 88/186 (47%), Gaps = 11/186 (5%)

Query: 82  LGYISGSILKELFISYNRIS---QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           L     ++ +E       +    Q + ID L+GL N +A+   L             LS+
Sbjct: 502 LAERVANMEQEAQGYREHLEVQRQKALIDPLTGLPNRAAWSERLDQEVNAWHQRGNSLSL 561

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK+IND +GH  GDKV+  +++ L        F+ R GGEEF      S   +
Sbjct: 562 AMLDLDHFKRINDGYGHLAGDKVLKIIANVLSKRLRPTDFIARFGGEEFVLLMPDSPLAD 621

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A  +   LR  IE    +   G  + IT+S G+A+    E     + RAD+ALY AK +G
Sbjct: 622 ALAVGGVLRNAIEACPFHFK-GEPVTITVSMGVAQLQSGERSELALKRADEALYRAKAAG 680

Query: 252 RNRVVC 257
           RN+V  
Sbjct: 681 RNQVQA 686


>gi|307822699|ref|ZP_07652930.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307736303|gb|EFO07149.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 982

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 10/181 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + E   +  +I QL+  D L+ L N       L           ++L+++  D+D FK 
Sbjct: 536 DITERKAAEEQIKQLAFFDPLTQLPNRRLLQERLKHGIDVERRDGKQLALLMLDLDRFKS 595

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLR 200
           +ND+ GH  GD+++  ++ ++         V RLGG+EF       +  ++AA +A ++ 
Sbjct: 596 VNDSLGHLAGDELLQQVAARITARLRDVDMVARLGGDEFIVLLEDIAHPEDAARVAEEII 655

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +      +  G  I I+ S GI+    H +  + ++  AD ALY AK +GR     FS
Sbjct: 656 ADLSK-PFWVEQGEDIQISASIGISLYPQHGDNPALLMDNADAALYQAKDAGRGCFAYFS 714

Query: 260 D 260
           +
Sbjct: 715 E 715


>gi|330806706|ref|YP_004351168.1| diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327374814|gb|AEA66164.1| Putative diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 700

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 61/196 (31%), Positives = 92/196 (46%), Gaps = 11/196 (5%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--- 123
           + +S  + S+   + L      +++E         Q + ID L+GL N +A+   L    
Sbjct: 506 QEVSTRLKSLADRVALMEQDAQVVRENLEEQ---RQKALIDPLTGLPNRAAWSERLEHEV 562

Query: 124 ----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                +   L +   D+D+FK+INDN+GH  GD+V+  ++  L        F+ R GGEE
Sbjct: 563 AQWQQHGNSLLLAMLDLDHFKRINDNYGHLAGDRVLKLIASVLRKRLRGGDFIARFGGEE 622

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F      +     A LA  LR  IE    +   G  + +T+S G+      E    ++ R
Sbjct: 623 FVLLVPNTPLVAGAKLAEALRLAIEACPFHFK-GEPVTVTVSIGLTAFKPGEHSDLVLKR 681

Query: 240 ADQALYVAKKSGRNRV 255
           ADQALY AK SGRN V
Sbjct: 682 ADQALYRAKNSGRNHV 697


>gi|313499909|gb|ADR61275.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas putida BIRD-1]
          Length = 1098

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 16/197 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
            ++   + +L  +  +I  L+  D L+ L N +  +  L         +N + +++F D+
Sbjct: 641 LLTARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDL 700

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS------EQ 190
           D+FK IND+ GHPVGD V+  ++ +L         V RLGG+EF     G        E+
Sbjct: 701 DHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSREHVEE 760

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKK 249
           +   LA+ LR+++   +     G  + +T S G+A    H    + ++ RAD ALY AK 
Sbjct: 761 KVRELADTLRELLA--EPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKRADIALYRAKD 818

Query: 250 SGRNRVVCFSDIENNTC 266
           SGRN    F        
Sbjct: 819 SGRNTTQLFHTTMQKAA 835


>gi|218438776|ref|YP_002377105.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp.
           PCC 7424]
 gi|218171504|gb|ACK70237.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp.
           PCC 7424]
          Length = 960

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 11/199 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---- 127
           ++  +   L +      + ++L  +  ++  L+ ID L+ + N   F   L  + +    
Sbjct: 761 LLTQLATQLAIAIQQSELHQQLQSTNQQLENLALIDQLTQIPNRRCFDHDLERHWQNLAR 820

Query: 128 ---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAA 183
               LS++  DIDYFKQ ND +GH  GD  +  ++  L          V R GGEEF   
Sbjct: 821 QKRPLSLLLCDIDYFKQYNDTYGHSGGDVCLTQVAQALKASARRASDLVARYGGEEFVII 880

Query: 184 ALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHITISAGIAERCHKEPIS--TIIYRA 240
              +    A  +A +++K ++  ++   +SG S ++T+S GIA    +  +    +I  A
Sbjct: 881 LPDTDNFGAIAVAQNIQKTLKELRLPHRASGVSSYVTVSIGIATLIPRSDLPSIELINAA 940

Query: 241 DQALYVAKKSGRNRVVCFS 259
           DQALY AK  GR+R    S
Sbjct: 941 DQALYQAKAQGRDRYSSHS 959


>gi|104781787|ref|YP_608285.1| diguanylate cyclase [Pseudomonas entomophila L48]
 gi|95110774|emb|CAK15487.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           entomophila L48]
          Length = 519

 Score =  205 bits (522), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 53/198 (26%), Positives = 94/198 (47%), Gaps = 10/198 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------- 122
            ++I +I   + +        ++L  S  ++ +L+ ID L+GL N   F  +L       
Sbjct: 301 WMLIRAIRRRIAVQEQLRVAQQQLLDSNQQLERLANIDALTGLANRRCFDETLVLEARRA 360

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFA 181
                 L+++  DID+FK+ ND FGHP GD  +  ++  L      P   + R GGEE A
Sbjct: 361 QRNGTPLALLMIDIDHFKRYNDTFGHPAGDACLQRVAKVLATCIRRPSDLLARYGGEEMA 420

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYR 239
                +    AA++A  + + + +  I+    P   +T+S G++       +   +++  
Sbjct: 421 VILPDTDSGGAAVVAQLMLERLAHETIDHPGSPFGRVTVSVGVSSAPGAQLDGWQSLLAA 480

Query: 240 ADQALYVAKKSGRNRVVC 257
           ADQALY AK +GR+ +  
Sbjct: 481 ADQALYRAKDAGRDCLHV 498


>gi|113972148|ref|YP_735941.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella sp. MR-4]
 gi|113886832|gb|ABI40884.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Shewanella sp. MR-4]
          Length = 1209

 Score =  205 bits (522), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 11/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           Y   + L + ++      +  YI S + + E  ++  RI  L+  D L+ L N  +  S 
Sbjct: 742 YDFPKWLMMSVVRDETGSVSHYIGSFTDISERKVNEERIHFLAHHDSLTLLPNRLSLQSR 801

Query: 122 LGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L +          +++++F D+D+FK IND  GH VGD ++  ++ +L  +  +   V R
Sbjct: 802 LETVFQEAFVSQTQIAVMFIDMDHFKNINDTLGHHVGDMLLLEVARRLKNIVSSDDIVAR 861

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           LGG+EF      +     A +A  LR  +  +Q  I     +H + S GI+      + +
Sbjct: 862 LGGDEFVVVLSDTDHDSVAKVAEALRSGL--NQTYIIDNKPLHSSPSIGISLFPTDGDSV 919

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             ++  AD A+Y AK +GRN    F+   N
Sbjct: 920 EALMKNADMAMYRAKAAGRNNYQFFTAAMN 949


>gi|330872987|gb|EGH07136.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 425

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 63/183 (34%), Positives = 96/183 (52%), Gaps = 12/183 (6%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIV 132
           +  Y+S    +        ++ +++  D L+GL N  A   +L           +  S +
Sbjct: 237 MTHYVSISQDVTTRLGREQKLLEIAHSDPLTGLDNRRAAEHTLERMINTARIAGKPFSFI 296

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK +ND +GHP GD V+  ++  L           R GGEEF      SS ++A
Sbjct: 297 ICDIDHFKSVNDQYGHPAGDSVLKSVAAILKHRIRAFDVAARWGGEEFLILVPDSSLKQA 356

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           A LA+ +RK +EN +I   +GP   +TIS G++E    E  +++I RAD+ALY AK+ GR
Sbjct: 357 AELADRIRKGVENLEIP-EAGP---VTISLGVSELSPGETAASLIQRADKALYQAKRLGR 412

Query: 253 NRV 255
           NRV
Sbjct: 413 NRV 415


>gi|83312550|ref|YP_422814.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82947391|dbj|BAE52255.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Magnetospirillum magneticum AMB-1]
          Length = 477

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 91/177 (51%), Gaps = 9/177 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           + + E     +++  L+  D L+G LN  AF       +     Y   +S++  DID+FK
Sbjct: 299 TDITERKHMESQLRHLATTDELTGCLNRRAFFVAAEQELERASRYGNAVSVLMIDIDHFK 358

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND  GH VGDK +   +  +          GRLGGEEFAA    ++   A ++A  LR
Sbjct: 359 QVNDRHGHAVGDKALKAATAAIRANLREIDSFGRLGGEEFAAMLPETTLAGALLVAERLR 418

Query: 201 KIIENSQINI-SSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
           + +E   + +    P + +T S G+AER   E  +  ++ RAD ALY AK  GRNRV
Sbjct: 419 QAVEAIALPLGDDQPPLRLTTSLGVAERQPGEVAVDQVLARADTALYRAKAEGRNRV 475


>gi|326316655|ref|YP_004234327.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373491|gb|ADX45760.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 535

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 61/228 (26%), Positives = 104/228 (45%), Gaps = 20/228 (8%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR 99
           AT + IA I L    + P            + +I ++ +         +  + L  ++ R
Sbjct: 298 ATAVQIAGILLLLAVIGP----------AGAYLIRTVKLRRDADLRLRTTHEALVEAHAR 347

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  ++  D L+G+ N  A+   +         Y   +S+V FD+D+FK+ ND  GHP GD
Sbjct: 348 MEHMAEHDGLTGVHNRRAYDRRIREVMAQCRRYQRPVSVVMFDVDFFKRYNDALGHPEGD 407

Query: 153 KVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           + +  +++ L   +     F+ R GGEEFA     +    A  +A   R  +   ++   
Sbjct: 408 ECLRRVANALAGSIRRPGDFIARYGGEEFAIVLPETDAPGALQVAQAARSAVIALRLPHP 467

Query: 212 SGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             P  H+T+S G+A       E    ++ RAD ALY AK+ GR+R+V 
Sbjct: 468 GSPFGHVTVSGGVACSPGQEPETPEELLGRADTALYEAKQQGRDRIVV 515


>gi|260779563|ref|ZP_05888453.1| putative sensory box/ggdef family protein [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260604372|gb|EEX30676.1| putative sensory box/ggdef family protein [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 328

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 57/181 (31%), Positives = 94/181 (51%), Gaps = 9/181 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
             +   +     + +LS  D L+G+ N  AF+ +L             LS +  DID+FK
Sbjct: 130 RDITSNYRRQEELKRLSETDELTGIFNRRAFLEALEQELQSYNETQRNLSCLMIDIDHFK 189

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND  GH  GD+VI  ++           ++GRLGGEEF      ++  +A  +A  +R
Sbjct: 190 EINDQVGHLSGDEVITQVARICQKQIRGSDYIGRLGGEEFGIVLSNTNAIQAYDIAERIR 249

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
           + IE+S  ++     IH T+S GIAE       +  ++ +AD+A+Y +K++GRN+V  + 
Sbjct: 250 QSIESSPCSVDD-HIIHPTVSIGIAEVTSGISHVKELLVQADKAMYYSKQTGRNQVTLYH 308

Query: 260 D 260
           D
Sbjct: 309 D 309


>gi|264680167|ref|YP_003280076.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262210682|gb|ACY34780.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 521

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 110/231 (47%), Gaps = 12/231 (5%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
           + ++ FI  +   +  +   +    +++  L  V+ +  I L   +++   L+    + +
Sbjct: 271 LPSLPFIIMVAKAHSDIFTAWRKRALIIACLMGVLTAAFIGLSFAFVTQ--LQRRIHAES 328

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
            ++ L+R D L+GL N       L     +        S++F DID FK  ND +GH  G
Sbjct: 329 ELALLARTDGLTGLNNRRRLDEMLDQEWHRARRNHSIFSLLFVDIDRFKVYNDTYGHQAG 388

Query: 152 DKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D VIA ++  +   +        R GGEEF      +S + A+ LA  +R  +    +  
Sbjct: 389 DDVIATIAQCIGDNIRRPGDIAARYGGEEFIVVLPDTSLEGASCLAESIRAAVSQLSVEH 448

Query: 211 SSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           S     +IT+S G A  E  H   ++++I  AD+ALY AK +GRN+VV F+
Sbjct: 449 SGSEFGYITVSIGCAAWEPEHDADVASVIRSADEALYKAKTTGRNKVVVFT 499


>gi|158522391|ref|YP_001530261.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3]
 gi|158511217|gb|ABW68184.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3]
          Length = 410

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 63/257 (24%), Positives = 118/257 (45%), Gaps = 27/257 (10%)

Query: 28  MIYFSIFFSIFIA-TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG--- 83
           +++ +I   I     V     +FL ++ + P++ +   L+ + +LV+ S+ +  LLG   
Sbjct: 149 ILFAAIVIRIPFWHAVALCGGLFLLHLLIFPWFQMPTDLIVHSALVVFSVAVISLLGNYR 208

Query: 84  --------YISGSIL----KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--- 128
                   Y+    +    ++L     ++ +++  D L+GL N   F + L +       
Sbjct: 209 IEREFRRAYLRALKMKIDARQLEGLNRQLEEMAVSDPLTGLFNRRHFDAHLDAEWRSAVR 268

Query: 129 ----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAA 183
               +S++F DID+FK  NDN GH  GD  +  ++D L   V        R GGEEF   
Sbjct: 269 EQLSISLIFIDIDHFKLYNDNHGHQAGDLCLKQIADTLTENVHRPGDACVRYGGEEFVVL 328

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAE--RCHKEPISTIIYRA 240
              ++  +A  +A  ++  ++   I     P    +T+S G+A       +    ++ +A
Sbjct: 329 LANTNMDQALYVAQKIQSHLQALAIPHGYSPVAGEVTVSMGVASMVPDRDDTPEDLLEKA 388

Query: 241 DQALYVAKKSGRNRVVC 257
           D++LY AK +GRNR+  
Sbjct: 389 DKSLYRAKDAGRNRICV 405


>gi|157963523|ref|YP_001503557.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157848523|gb|ABV89022.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
          Length = 320

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 74/257 (28%), Positives = 115/257 (44%), Gaps = 20/257 (7%)

Query: 22  FSPHTFMI--YFSIFFSIFIATVIFIANIFLF-YIGLTPFYGLEYILVENLSLVIISIT- 77
           + P T++     S++     A + +    F+F +    P  G    + +N++L+ +S   
Sbjct: 65  YLPATWLKQKMESVYLLKNRAFISWEQRPFVFQFKNYRPITGRADFMYQNVTLLPLSSLT 124

Query: 78  -----ISLLLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSLG------- 123
                IS+++  ++   +   +L  +  R   LS+ID L+ L N   +   L        
Sbjct: 125 GEVTHISMIVYDVTDVAINKLQLKSANERFEHLSQIDGLTQLFNRRHWEQCLQKEFDRHA 184

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            Y    S+V  DID+FK IND +GH  GDKV+  +S  +          GR GGEEF   
Sbjct: 185 RYGSDTSLVMLDIDHFKSINDTYGHQAGDKVLQNVSHLIKKSLRETDCAGRYGGEEFGVV 244

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQ 242
              +    A   A  LRK +E  +I       I IT+S GI E +       T +  ADQ
Sbjct: 245 LANTPAANARFFAERLRKKLEQLEICYEE-HIIKITVSLGICEIKPEIMDSDTWLSLADQ 303

Query: 243 ALYVAKKSGRNRVVCFS 259
           ALY AK++GRN  +   
Sbjct: 304 ALYQAKEAGRNCTIAHE 320


>gi|90023333|ref|YP_529160.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89952933|gb|ABD82948.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 476

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 66/257 (25%), Positives = 123/257 (47%), Gaps = 10/257 (3%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYF--SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILV 66
           L+++      L   +   FM  +  S+F  I +  VI       +   + P  G  +   
Sbjct: 205 LAVYASGLPLLYLLTGICFMAAYRLSLFGVIVVNLVIATITSSAYMWQVGP--GAHFAAP 262

Query: 67  ENLSLVIISITISLLLGYI---SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-- 121
             L L+ + +  ++++  +   + S  +EL + ++R    +R+D L+ + N   F     
Sbjct: 263 IQLGLIQLFLAFNMVISLVFWCTQSRNRELSVKWSRAETQARLDPLTKIYNRRGFEERAI 322

Query: 122 -LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            L      LS++  DID+FK +ND++GH +GD+V+   S ++  +        R+GGEEF
Sbjct: 323 QLMRQKRTLSLLILDIDHFKYVNDHYGHDIGDEVLRQFSKKIAGMIRDSDVFARIGGEEF 382

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
           A      + + A ++A  +R  IE++++ +SS  +I  T+S G++       I   +   
Sbjct: 383 AVILADQNLELAGLMAERIRATIESTELPVSSDNTIKYTVSIGVSSVSEGVDIHRWLKTT 442

Query: 241 DQALYVAKKSGRNRVVC 257
           D+ LY AK  GRN+V  
Sbjct: 443 DKLLYQAKAQGRNQVAA 459


>gi|170724256|ref|YP_001751944.1| diguanylate cyclase [Pseudomonas putida W619]
 gi|169762259|gb|ACA75575.1| diguanylate cyclase [Pseudomonas putida W619]
          Length = 653

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 8/169 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNF 146
                   Q + ID L+GL N +A+   +    +        L++   D+D+FK+IND++
Sbjct: 483 REHLEETRQKALIDPLTGLPNRAAWSEQVEREMQAWQENGGHLAMAILDLDHFKRINDSY 542

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GDKV+  ++DQL        F+ R GGEEF      +S   AA +A  LR  IE  
Sbjct: 543 GHLAGDKVLKIVADQLRKRLRPRDFIARFGGEEFVLLLAQTSPTVAAQVAEVLRAAIEAC 602

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +   G  + IT S G++     E    ++ RAD ALY AK  GRNRV
Sbjct: 603 PFHFK-GERVVITASIGLSAFRSGERDDQVLKRADAALYRAKDLGRNRV 650


>gi|218247443|ref|YP_002372814.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8801]
 gi|257061220|ref|YP_003139108.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8802]
 gi|218167921|gb|ACK66658.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8801]
 gi|256591386|gb|ACV02273.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8802]
          Length = 696

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 13/196 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132
           L+  Y+    + +   +  ++   +  D L+ L N + F   L          N  L+++
Sbjct: 249 LIRSYLFN--ITDRKEAEKKLKYHAFYDTLTNLPNRTWFDEKLAIALTKAKRENHLLAVL 306

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQE 191
           F D+D FK IND  GHP+GD+++   + +L     +   V R GG+EF        S ++
Sbjct: 307 FLDLDSFKNINDTLGHPMGDQLLKQFAQRLNSCVRSGDMVARWGGDEFTLLLPQIHSPED 366

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
              LA  +    E  Q    SG  ++I  S GIA          +++  AD ALY AK+ 
Sbjct: 367 TVNLAQRILD--ELKQPFEVSGHQLYIKTSIGIAIYPQDGHDTESLLKNADAALYRAKER 424

Query: 251 GRNRVVCFSDIENNTC 266
           GRN    +S    +  
Sbjct: 425 GRNHYRFYSSTMTSKA 440


>gi|148548982|ref|YP_001269084.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida F1]
 gi|148513040|gb|ABQ79900.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida F1]
          Length = 1098

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 16/197 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
            ++   + +L  +  +I  L+  D L+ L N +  +  L         +N + +++F D+
Sbjct: 641 LLTARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDL 700

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS------EQ 190
           D+FK IND+ GHPVGD V+  ++ +L         V RLGG+EF     G        E+
Sbjct: 701 DHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSREHVEE 760

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKK 249
           +   LA+ LR+++   +     G  + +T S G+A    H    + ++ RAD ALY AK 
Sbjct: 761 KVRELADTLRELLA--EPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKRADIALYRAKD 818

Query: 250 SGRNRVVCFSDIENNTC 266
           SGRN    F        
Sbjct: 819 SGRNTTQLFHTTMQKAA 835


>gi|330826986|ref|YP_004390289.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Alicycliphilus denitrificans
           K601]
 gi|329312358|gb|AEB86773.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Alicycliphilus denitrificans K601]
          Length = 858

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 10/187 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L E       I QL+  D L+GL N S         +         L+++F D+D FK
Sbjct: 415 ALLLERERERAHIHQLAYYDALTGLANRSMLRTQAERRLHEARRSGAPLALLFIDLDRFK 474

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND  GHP GD +++ ++ +L           R+GG+EF          +AA +A  L 
Sbjct: 475 QVNDTQGHPAGDALLSAVATRLQDSARAGDVAARMGGDEFVLVLPQCGASQAAAVAERLL 534

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +   Q   + G  ++ + S GIA          +++  AD A+Y AK +G      +S
Sbjct: 535 AAVA--QPVEAEGAVLYPSASLGIAMYPEDGTDADSLLRCADMAMYQAKSAGGQCYHFYS 592

Query: 260 DIENNTC 266
              N+  
Sbjct: 593 AEMNDQA 599


>gi|319764770|ref|YP_004128707.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|317119331|gb|ADV01820.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
          Length = 858

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 10/187 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L E       I QL+  D L+GL N S         +         L+++F D+D FK
Sbjct: 415 ALLLERERERAHIHQLAYYDALTGLANRSMLRTQAERRLHEARRSGAPLALLFIDLDRFK 474

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND  GHP GD +++ ++ +L           R+GG+EF          +AA +A  L 
Sbjct: 475 QVNDTQGHPAGDALLSAVATRLQDSARAGDVAARMGGDEFVLVLPQCGASQAAAVAERLL 534

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +   Q   + G  ++ + S GIA          +++  AD A+Y AK +G      +S
Sbjct: 535 AAVA--QPVEAEGAVLYPSASLGIAMYPEDGTDADSLLRCADMAMYQAKSAGGQCYHFYS 592

Query: 260 DIENNTC 266
              N+  
Sbjct: 593 AEMNDQA 599


>gi|316935192|ref|YP_004110174.1| hemerythrin-like metal-binding domain-containing/PAS/PAC sensor
           -containing diguanylate cyclase [Rhodopseudomonas
           palustris DX-1]
 gi|315602906|gb|ADU45441.1| diguanylate cyclase with PAS/PAC sensor and hemerythrin-like
           metal-binding domain [Rhodopseudomonas palustris DX-1]
          Length = 468

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 10/188 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKL 129
           T  LLL   +G + +E+     ++ +L+  D L+GL N  + +  +           ++L
Sbjct: 273 TSELLLSEANGRLEREVSERTRKLKRLALADPLTGLANRRSLLERIDREVARSAGSGDEL 332

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++F D+D+FK IND  GH  GD  +  ++  +        FVGRLGGEEF A    + E
Sbjct: 333 SLLFIDVDHFKTINDTLGHAAGDAALIEVARLIEQSLRRTDFVGRLGGEEFVAVLAKTGE 392

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
             A   A+ +R+ I   +     G    +T+S G++     +  + ++ RAD A+  AK+
Sbjct: 393 AGACEAADTIRRTISRHEF---DGLGRPVTVSIGVSSHGSGDDGTALLDRADHAMLQAKR 449

Query: 250 SGRNRVVC 257
            GRNR   
Sbjct: 450 DGRNRCRV 457


>gi|104779395|ref|YP_605893.1| diguanylate cyclase [Pseudomonas entomophila L48]
 gi|95108382|emb|CAK13076.1| putative diguanylate cyclase (GGDEF domain protein) [Pseudomonas
           entomophila L48]
          Length = 661

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 60/184 (32%), Positives = 87/184 (47%), Gaps = 11/184 (5%)

Query: 82  LGYISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           L     S+ +E       + +    + ID L+GL N +A+   +             L++
Sbjct: 476 LAERVASMEQEALGYREHLEEQRQKAMIDPLTGLPNRAAWSERVEHEVLDWQENGGHLAM 535

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK+IND +GH  GDKV+  ++DQL        F+ R GGEEF      +S   
Sbjct: 536 AILDLDHFKRINDGYGHLAGDKVLKIVADQLRKRLRGRDFIARFGGEEFVLLLPQTSPPA 595

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A  +A  LR  IE    +   G  + IT S GI+     E    ++ RAD ALY AK  G
Sbjct: 596 AVQVAETLRAAIEACPFHFK-GERVVITASIGISAFRSGERGDQVLKRADDALYRAKDKG 654

Query: 252 RNRV 255
           RNR+
Sbjct: 655 RNRI 658


>gi|83312716|ref|YP_422980.1| hypothetical protein amb3617 [Magnetospirillum magneticum AMB-1]
 gi|82947557|dbj|BAE52421.1| Hypothetical protein yddU [Magnetospirillum magneticum AMB-1]
          Length = 802

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 11/186 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQI 142
           + +   +  ++   +  D L+GL N                    ++ ++F D+D FK +
Sbjct: 359 ITQRKETEQQLVHQATHDTLTGLPNRLLLEDRVHHAIEVAKREGRRIGLMFLDLDRFKIV 418

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRK 201
           ND+ GH  GD+++  +SD+L         V RLGG+EF        S  E A +A  +  
Sbjct: 419 NDSLGHVAGDELLKVVSDRLRHTLRRSDTVARLGGDEFVVVLTHFQSTTELAEVAEKISA 478

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            ++  +    SG  +H+  S GIA      +  + ++  AD A+Y AK+ GRN    +  
Sbjct: 479 ALD--EPVELSGHKVHVGASIGIAIYPDDGDNFNALMKDADTAMYRAKQKGRNTFCFYDS 536

Query: 261 IENNTC 266
             N+  
Sbjct: 537 NMNDEA 542


>gi|56475890|ref|YP_157479.1| hypothetical protein ebA864 [Aromatoleum aromaticum EbN1]
 gi|56311933|emb|CAI06578.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 313

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 104/225 (46%), Gaps = 18/225 (8%)

Query: 54  GLTPFYGLE---YILVENLSLVIISITISLLLGYISG-------SILKELFISYNRISQL 103
           G TPF G     + L ++ S   I +T++   G             + E       + QL
Sbjct: 88  GETPFDGETREFHALRKDGSEFPIELTVASWFGEDRRLSFIGIIRDITERKRLEAELRQL 147

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  D L+G+LN   F       I         L+++  DID+FK+IND FGH VGD+VI 
Sbjct: 148 ATTDPLTGILNRRRFTELTTQEIHRAHRLRHPLTLIMLDIDWFKRINDAFGHTVGDRVIQ 207

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            L+            +GRLGGEEFA          +  +A  LR+ +E  QI ++ G  +
Sbjct: 208 SLASACASELREIDILGRLGGEEFAVVLPELGASGSLEVAERLRQKVEGLQITLNDGRIV 267

Query: 217 HITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             T S G+A      +   T++ RAD ALY AK+ GRN V   SD
Sbjct: 268 RFTCSLGVAVLKDTDQSPDTLLVRADNALYRAKRDGRNCVRAASD 312


>gi|114320677|ref|YP_742360.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227071|gb|ABI56870.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 237

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 79/179 (44%), Gaps = 11/179 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
             + E      RI  L+  D L+G++N   F       I     +N  +++V +D+D+FK
Sbjct: 56  RDITERKRDQERIRYLATTDALTGIMNRGEFTRHLTKEIERAARFNRPVAVVMYDLDHFK 115

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+V+     Q+           R GGEEF      +    A   A  LR
Sbjct: 116 RVNDTYGHDAGDEVLKTAVAQVNNAIRRVDVHARWGGEEFILLLPETDLAAAVKSAERLR 175

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I              +T S G+     ++    +I RAD ALY+AK +GRNRV   S
Sbjct: 176 AAIAEHPFKQPE----RVTASFGVTTLGPRDRFDVLIKRADDALYLAKHAGRNRVEALS 230


>gi|304309898|ref|YP_003809496.1| hypothetical protein HDN1F_02470 [gamma proteobacterium HdN1]
 gi|301795631|emb|CBL43830.1| hypothetical protein HDN1F_02470 [gamma proteobacterium HdN1]
          Length = 993

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 89/183 (48%), Gaps = 10/183 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNH----SAFISSL---GSYNEKLSIVFFDIDYFKQ 141
            + E   +   I +L+  D L+GL N       F S+L     ++  L+++F D+D FK 
Sbjct: 543 DVTEKKRTEAHIHKLAHYDPLTGLANRVLLVDHFDSALALAQRHSLPLALMFMDLDRFKI 602

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH VGD+V+  ++ Q          V R GG+EF     G + Q+A  +A  L +
Sbjct: 603 INDTLGHSVGDEVLIHVAKQFKTSIRDEDTVARRGGDEFVFIFPGINSQQARNVAQKLSR 662

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            I  S+   S    ++IT S GIA          T+  +AD A+Y AK++GRN+   ++ 
Sbjct: 663 SI--SEPFRSEHQELNITSSIGIAMYPDDGGDFETLARKADVAMYRAKQNGRNQFAFYTQ 720

Query: 261 IEN 263
              
Sbjct: 721 EMQ 723


>gi|170720732|ref|YP_001748420.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida W619]
 gi|169758735|gb|ACA72051.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida W619]
          Length = 1098

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 63/217 (29%), Positives = 102/217 (47%), Gaps = 17/217 (7%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL- 122
           IL   +S+  IS+  +  L  ++   + +L  +  +I  L+  D L+ L N +  +  L 
Sbjct: 622 ILTVEVSVEPISLNETDCL-LLTARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLS 680

Query: 123 ------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                   +N + +++F D+D+FK IND+ GHPVGD V+  ++ +L         V RLG
Sbjct: 681 QQIALLRRHNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLG 740

Query: 177 GEEFAAAALGSS------EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCH 229
           G+EF     G        E +   LA+ LR+++   +     G  + +T S G+A    H
Sbjct: 741 GDEFVVLLSGLEGSREAVENKVRELADTLRELLA--EPMSLDGQRLQVTPSIGVALIPDH 798

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
               + ++ RAD ALY AK SGRN    F        
Sbjct: 799 GTTPADLLKRADIALYRAKDSGRNTTQLFHTTMQKAA 835


>gi|39997142|ref|NP_953093.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
 gi|39984032|gb|AAR35420.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
 gi|298506155|gb|ADI84878.1| sensor diguanylate cyclase/phosphodiesterase, GAF and PAS_4
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 762

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 12/191 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           +   + +   +   I Q++  D L+GL N   F   L             LS++F D+D 
Sbjct: 307 AFRDITDRRQAEETIRQMAYYDSLTGLPNRRLFNDRLRQSLALAQRNKRLLSVLFLDLDR 366

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAA-AALGSSEQEAAILA 196
           FK IND  GH VGDK++  ++ +L          V R GG+EF    ++ S  ++A  +A
Sbjct: 367 FKLINDTLGHAVGDKLLMQVAKRLKGVCRRDGDTVARQGGDEFIINLSVISDVKDALKVA 426

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             +   +      +  G  + IT S GI+           ++  AD A+Y AK+ GRN  
Sbjct: 427 QKIIDSLRT--PFVIDGHELFITTSIGISVFPYDGRTSDALVKNADFAMYRAKEQGRNNC 484

Query: 256 VCFSDIENNTC 266
             ++   N+  
Sbjct: 485 QLYTPEMNSKA 495


>gi|299134563|ref|ZP_07027755.1| diguanylate cyclase [Afipia sp. 1NLS2]
 gi|298590373|gb|EFI50576.1| diguanylate cyclase [Afipia sp. 1NLS2]
          Length = 398

 Score =  204 bits (521), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 69/217 (31%), Positives = 108/217 (49%), Gaps = 4/217 (1%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQL 103
            +  + L + G    +       EN++LV+ SIT    LG +S ++ +     +++  + 
Sbjct: 163 VLCAVVLLHHGEWIMHRAPSGWAENINLVM-SITSIGGLGALSLALNQVRIARHHQ--RE 219

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           +  D L+GL N  A           +++  FDID+FKQ+ND  GH VGD V+   +  L 
Sbjct: 220 AETDALTGLFNRRALFERSLRLRGSVAVAVFDIDHFKQVNDRHGHQVGDTVLQTFASLLA 279

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                     RLGGEEF      ++  +A  +A  +R+     Q  ISS  S  +T+SAG
Sbjct: 280 ANVRDGDLAARLGGEEFVIILSETTMDQATQIAERVRESFAGQQF-ISSSGSFVVTVSAG 338

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           IA       I  ++ +AD ALY AK+SGRNRV+ + +
Sbjct: 339 IAGGDSDTDIIALLRQADTALYDAKRSGRNRVLLYFE 375


>gi|146307747|ref|YP_001188212.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas mendocina ymp]
 gi|145575948|gb|ABP85480.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas mendocina ymp]
          Length = 717

 Score =  204 bits (521), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
            ++   + EL  +  ++  L+  D L+ L N +  I+ L         ++ + +++F D+
Sbjct: 262 LLTARDISELKQAQAQVQHLAYHDALTNLPNRAMLINRLTQQIALLKRHDMRSALLFIDL 321

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG------SSEQ 190
           D+FK IND+ GHPVGD V+  ++ +L         V RLGG+EF     G         +
Sbjct: 322 DHFKHINDSLGHPVGDAVLRLVTARLEATVRLEDTVARLGGDEFVVLLCGLQGKRSEVTR 381

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKK 249
           +   +A  LR ++   +  +  G  + +T S GIA    H E  + ++ RAD ALY AK 
Sbjct: 382 QVRQVAEKLRHLLA--EPMLLDGHHLQVTPSIGIALIPDHGETPADLLKRADIALYRAKD 439

Query: 250 SGRNRVVCFSDIENNT 265
           SGRN +  F     + 
Sbjct: 440 SGRNAIQLFRSTMQDA 455


>gi|86159891|ref|YP_466676.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776402|gb|ABC83239.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 351

 Score =  204 bits (521), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 105/235 (44%), Gaps = 16/235 (6%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           FI  +I      L         G +  L +  +   I    + +L     ++  +L  + 
Sbjct: 107 FIPVIILSVKSDLDSKVAGLRIGADDFLAKPFAEAEILARCAAMLRI--KTLQDQLRETQ 164

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ + +  D L+GL N  AF   L         Y++ +S++  D+D+FK +ND +GHP 
Sbjct: 165 RRLREQTLTDDLTGLKNRRAFDERLQEEFRRAHRYSDPVSLIMIDLDHFKLVNDRYGHPF 224

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+   S+QL      P    R GGEEFA     +    A  +A  + K +      +
Sbjct: 225 GDLVLRGASEQLRASTRDPDICARYGGEEFAVILPKTHLSGALAVAERIWKELSARSYPV 284

Query: 211 SSG-----PSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCF 258
            +G      +I +T S GIA    K+      ++  AD+ALY AKK+GRN +  +
Sbjct: 285 PAGSAEPDTAIQVTASMGIAFYPSKDIGSPEALVRYADEALYQAKKAGRNTICLY 339


>gi|251788391|ref|YP_003003112.1| PAS/PAC sensor diguanylate cyclase [Dickeya zeae Ech1591]
 gi|247537012|gb|ACT05633.1| diguanylate cyclase with PAS/PAC sensor [Dickeya zeae Ech1591]
          Length = 463

 Score =  204 bits (521), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 11/186 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVF 133
           ++ Y S   + EL  S   +  L++ D L+G+ N   F            S  + LS++ 
Sbjct: 267 IVFYGSMLDVTELKQSETLLQVLAQTDSLTGIANRRHFDERYQHLWRQQESMQKPLSLLM 326

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            DID FK+ ND++GH  GD  I  + + L   +  +   +GR GGEEF      +  ++A
Sbjct: 327 IDIDRFKRFNDSYGHSKGDACIKSVVETLAAQLPSSECLLGRYGGEEFIMVLPETDHRQA 386

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKK 249
            ILA   R+ +E+ +I  +  P   +T+S G+A     E    ++ +   ADQALY AK 
Sbjct: 387 LILAERCRQAVESMEIPHTKSPQGVVTVSIGVAAAKPGETGSSMTQLSNDADQALYRAKH 446

Query: 250 SGRNRV 255
            GRNRV
Sbjct: 447 QGRNRV 452


>gi|119490770|ref|ZP_01623102.1| PleD-like protein [Lyngbya sp. PCC 8106]
 gi|119453754|gb|EAW34912.1| PleD-like protein [Lyngbya sp. PCC 8106]
          Length = 1252

 Score =  204 bits (521), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 59/191 (30%), Positives = 91/191 (47%), Gaps = 14/191 (7%)

Query: 85   ISGSILKELFIS------YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSI 131
            ++ ++++ L I+        +    S  D L+GL N      SL     +       + I
Sbjct: 1061 LARTVVEHLAIALANVKLQEKFKAQSMRDALTGLFNRRYLEESLEQEIHRARRNHYSVGI 1120

Query: 132  VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
            V  DID+FK+ ND FGH  GD+V+  ++  L     +     R GGEE       +S  +
Sbjct: 1121 VMIDIDHFKRFNDQFGHDAGDEVLKTVARLLQGSIRSSDIACRYGGEELTLILPEASLSD 1180

Query: 192  AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
                +  +R +IE+ Q++  +     IT S G+A    H E +  ++  AD ALY AK  
Sbjct: 1181 TQARSEQIRYMIEHLQLHYENQSLGSITASFGVACFPEHGETLEAVLRIADTALYQAKAL 1240

Query: 251  GRNRVVCFSDI 261
            GRNRVVC +DI
Sbjct: 1241 GRNRVVCATDI 1251


>gi|260220680|emb|CBA28474.1| hypothetical protein Csp_A07390 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 897

 Score =  204 bits (521), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 85/193 (44%), Gaps = 16/193 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           ++   + +       I +L+  D L+GL N    +  +           +  +++F D+D
Sbjct: 444 VTLRDITQQRQDEEEIRRLAFYDPLTGLPNRRLLMDRVRQAMVNSARLGQHGALMFLDLD 503

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE------QE 191
           +FK +ND  GH VGD+++  ++ +L         V RLGG+EF     G S+       +
Sbjct: 504 HFKLLNDTLGHDVGDELLQQVAYRLRNCVREGDSVARLGGDEFVVLLEGLSDNRTDAANQ 563

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250
           A ++A+ +   +         G   + T S GI       E +  ++ +AD A+Y AK +
Sbjct: 564 AEVVAHKILDALAL--PYSLRGHGYNSTPSIGIVVFMEDHETMDDLLKKADVAMYQAKAA 621

Query: 251 GRNRVVCFSDIEN 263
           GRN    F  +  
Sbjct: 622 GRNTARFFDPVMQ 634


>gi|237654605|ref|YP_002890919.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
 gi|237625852|gb|ACR02542.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
          Length = 855

 Score =  204 bits (521), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 11/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           + +  L  +  RI  L+  D L+GL N       L            +L+++F D+D FK
Sbjct: 413 TDISRLKETEARIRDLAYYDPLTGLPNRRLLDDRLQVELAHAARLRCRLAVMFVDLDRFK 472

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
           +IND+ GH VGDK++  ++ +L         V R+GG+EF       S   EAA +A  +
Sbjct: 473 RINDSLGHAVGDKLLVEIAARLRASLRDDDTVARMGGDEFLVVLNNLSGPDEAATMARRM 532

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
             + E  +     G  + +T S G+A          T++  AD A+Y AK  GRN    F
Sbjct: 533 --VAELRRPVNVEGRELVVTTSVGVAVYPDDSRDADTLVKHADVAMYRAKDEGRNSFQLF 590

Query: 259 SDIEN 263
               N
Sbjct: 591 EPAMN 595


>gi|283856362|ref|YP_162654.2| diguanylate cyclase with beta propeller sensor [Zymomonas mobilis
            subsp. mobilis ZM4]
 gi|283775361|gb|AAV89543.2| diguanylate cyclase with beta propeller sensor [Zymomonas mobilis
            subsp. mobilis ZM4]
          Length = 1008

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 101/206 (49%), Gaps = 10/206 (4%)

Query: 58   FYGLEYILVENLSLV-IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
            F  +  I++  L L  +IS  I  L   I+   L EL  +  R+ +L+  D L+GLLN  
Sbjct: 803  FVKIALIIILVLFLYDLISNQIRKLRLMITNKTL-ELQETNLRLKELANTDELTGLLNRR 861

Query: 117  AFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            AF               ++ S+   DID+FK+INDN GH  GD VI +++ ++       
Sbjct: 862  AFTEMFEKNCAQFSKTKDQFSVFILDIDFFKKINDNEGHLAGDAVIQYIAQKITENIRQQ 921

Query: 170  MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
             F  R GGEEF      +  +    +A+ +   I    +    G  I +T+S G+A    
Sbjct: 922  DFAARYGGEEFVIMLPNADMETTCQVASRIGNAISEKPVPY-QGREIPVTVSIGVAVMKE 980

Query: 230  KEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++ RAD+ LY+AK  GRNRV
Sbjct: 981  NDDANSLLERADERLYMAKNQGRNRV 1006


>gi|121609900|ref|YP_997707.1| diguanylate cyclase [Verminephrobacter eiseniae EF01-2]
 gi|121554540|gb|ABM58689.1| diguanylate cyclase [Verminephrobacter eiseniae EF01-2]
          Length = 612

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 114/247 (46%), Gaps = 13/247 (5%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL 81
             P+TF  + +  F + +A ++ ++      + L         L E    +  +  +   
Sbjct: 362 LIPYTFANFHASEFGL-LADMVLLSQALADRVKLLSEQRDAAELREIEQKIATTALLKQA 420

Query: 82  LGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSI 131
              +   +L+   EL  + +     +RID L+G+ N   F               + LS+
Sbjct: 421 NEDLERMVLERTSELARARDEAEHFARIDMLTGVANRRYFEEVATMEFARTQRGQQALSV 480

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID FKQ+ND +GH  GD VI  ++           FV R+GGEEF+    G  +  
Sbjct: 481 ILIDIDLFKQVNDRYGHAAGDAVIRAVARLAKESVRESDFVARIGGEEFSVLLPGIGQAP 540

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKS 250
           A   A  LR+ I    +    G S+  T S G++E+   +P  S+++ RADQALY AK++
Sbjct: 541 AFATAERLRERIAACVVEH-DGHSLGFTASFGVSEQVADDPGFSSLLRRADQALYAAKQA 599

Query: 251 GRNRVVC 257
           GRN+VV 
Sbjct: 600 GRNQVVV 606


>gi|94501570|ref|ZP_01308087.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Oceanobacter sp. RED65]
 gi|94426253|gb|EAT11244.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Oceanobacter sp. RED65]
          Length = 577

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 11/180 (6%)

Query: 88  SILKELFISYNRISQ---LSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDID 137
           ++ KEL  +  +++Q    +  D L+GL N  A+             Y  +LS++  D+D
Sbjct: 379 TMEKELEEAKEQLNQSQLKAMTDSLTGLPNRGAYDVYAQQEYERYKRYGGELSLIVCDVD 438

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK IND +GH  GDKV+  +S Q+         + R GGEEF      + +++A  +A 
Sbjct: 439 KFKSINDTYGHQAGDKVLQLISRQVKKGTRETDLLARYGGEEFVVLLPETKQEDAVSVAE 498

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + + +  S  +   G  + ITIS G+A          +   AD ALY AK++GRN+   
Sbjct: 499 KIIEAVATSPFHFR-GKRVQITISCGVASFKKGYRPEQVFDAADAALYRAKENGRNQYQL 557


>gi|144898776|emb|CAM75640.1| GGDEF domain protein [Magnetospirillum gryphiswaldense MSR-1]
          Length = 494

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 68/217 (31%), Positives = 98/217 (45%), Gaps = 10/217 (4%)

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCL 109
           L  +G      L         L    + +  L   +  S L+ L      + +L+  D L
Sbjct: 277 LLIVGYDKNGTLHEWERRTWQLSAGFVILLALSLVVRRSHLRAL-AQREEMRKLATTDTL 335

Query: 110 SGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +G+ N    I            Y   LS++  DID+FK IND +GHP GD+ I  ++  +
Sbjct: 336 TGIANRRQLIETGEHEVARAHRYGHALSVLILDIDHFKAINDTWGHPAGDRAIQNVAKAM 395

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-NSQINISSGPSIHITIS 221
             +       GRLGGEEFA     +    AAI+A  LR+ IE  +      G  I  T+S
Sbjct: 396 AGLVRDQDTAGRLGGEEFAIILPETDAAGAAIMAERLRQGIETTTTTQADDGTVIRFTVS 455

Query: 222 AGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            G A    +E    +++ RAD+ LY AK SGRNRV+ 
Sbjct: 456 IGTASLNAQEASFDSLLSRADKGLYQAKGSGRNRVMA 492


>gi|253699922|ref|YP_003021111.1| diguanylate cyclase [Geobacter sp. M21]
 gi|251774772|gb|ACT17353.1| diguanylate cyclase [Geobacter sp. M21]
          Length = 432

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 11/173 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           L+EL  +   +   +  D ++G+LN   F   L         Y   L+I+F D+D FK I
Sbjct: 253 LQELKQANALLESQATTDPVTGILNRRKFCELLESAIQESKRYGLPLAIIFLDVDRFKPI 312

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD V+  L+  +  +        R GGEEF      +  + A +LA  +R  
Sbjct: 313 NDTYGHDAGDSVLRELAGLVSGMIRKTDIFARFGGEEFVLVVHNNDGRTARMLAEKIRSR 372

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +              +T S G+A     +   +++ RADQA+Y AK +GRNRV
Sbjct: 373 VSQHSFIHVG----QVTASFGVARLEPGDTPESLVKRADQAMYSAKHAGRNRV 421


>gi|114320525|ref|YP_742208.1| diguanylate cyclase with PAS/PAC sensor [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226919|gb|ABI56718.1| diguanylate cyclase with PAS/PAC sensor [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 302

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 53/210 (25%), Positives = 98/210 (46%), Gaps = 12/210 (5%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L   +    ++   ++LV + +  + ++  +S   L        ++   +  D L+GL+N
Sbjct: 97  LQALHRSGEVIPVEIALVPVDVAGTRMV-MVSAIDLSVRKALEAQLHHQANHDPLTGLVN 155

Query: 115 HSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
              F   L    E+        +++  DID+FK +ND +GH  GDKV+   +++L     
Sbjct: 156 RYHFEELLAREIERGQRYGGGFALIMLDIDHFKAVNDTYGHLEGDKVLRRFAEELTGKIR 215

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
               + R GGEEF     G+    A  LA  +R  +   ++ +       +T+S G+   
Sbjct: 216 AADTLARWGGEEFMLLLPGTDIAGARALAEAIRVAVNGCRMPVPG----QVTVSLGVTGY 271

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + E +  ++ R D+ALY AK +GR++VV 
Sbjct: 272 RNGESVWGLLKRVDEALYAAKLAGRDQVVV 301


>gi|315187397|gb|EFU21153.1| diguanylate cyclase [Spirochaeta thermophila DSM 6578]
          Length = 298

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 104/238 (43%), Gaps = 14/238 (5%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           +   ++  I+  +       +A +F  + G      L    V  L+ V I +   +LL  
Sbjct: 64  YMLTLFLGIWALVVAVWGELLAAVF--WTGPVVVAVLNGFYVVALTGVTIGV---MLLIR 118

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           +    + EL     R+ +LS  D L+GL N   F   L         Y   LS++F D+D
Sbjct: 119 MYRMTISELSEKQRRLIELSITDDLTGLYNARYFYRRLEEEIARSRRYGRPLSLLFIDLD 178

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK+ ND +GH  GD+V+  ++  L           R GGEEF      +  +E  + A 
Sbjct: 179 DFKRFNDTYGHLAGDRVLRKVARVLRESLRENDSAYRYGGEEFVIILPETGAEEGRVAAE 238

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +R+ IE           + +T S G+ E    + I   + RADQA+Y AK  G+NRV
Sbjct: 239 RVRRRIEECSFR--GEEKVKVTASVGVVEYREGDAIEDFVRRADQAMYRAKAEGKNRV 294


>gi|237807132|ref|YP_002891572.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Tolumonas auensis DSM 9187]
 gi|237499393|gb|ACQ91986.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Tolumonas auensis DSM 9187]
          Length = 1098

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 94/191 (49%), Gaps = 11/191 (5%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIV 132
           +L YIS  + + +L  S  R+  ++  D L+GL N +     L S  +       +++++
Sbjct: 629 ILYYISIYTDISQLKDSEARLEHMALHDPLTGLPNRAMLGQKLDSALQHAMLNSTRVALL 688

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQE 191
             D+D+FK +ND+FGH  GD+++  +S +L         V RLGG+EF      + S  +
Sbjct: 689 MLDLDHFKNVNDSFGHHFGDELLHQVSARLKQQLRESDVVCRLGGDEFTVLLQNNPSPDD 748

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
            ++LA  +   +      +S+   + I  S GI+    H      ++ +AD A+Y AK  
Sbjct: 749 VSLLAERIIHALHQ-PFLLSNAREVMIGTSIGISLYPEHGSTAEELMQQADTAMYRAKHD 807

Query: 251 GRNRVVCFSDI 261
           GR+    FS+ 
Sbjct: 808 GRDGYRYFSEE 818


>gi|83644506|ref|YP_432941.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83632549|gb|ABC28516.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 303

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 115/228 (50%), Gaps = 18/228 (7%)

Query: 49  FLF-YIGLTPFYGLEYILVENLSLVIISI------TISLLLGYIS--GSILKELFISYNR 99
           FLF +    P  G E  + +N+++  +         I L++  ++   S  ++L  + ++
Sbjct: 76  FLFRFKNYRPITGTEEFMYQNITITPLVSPNGEVQNICLIIYDVTDIASNRRQLEAANSK 135

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +LSRID L+ L N   +   L          NE  +++ FDID+FK++ND +GHP GD
Sbjct: 136 LEKLSRIDRLTQLNNRGYWEEQLVKEYQRVKRTNEASTLIMFDIDHFKKVNDTYGHPAGD 195

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +VI  +S  L     +    GR GGEEF+   + +  + A   A  LR  IEN ++    
Sbjct: 196 EVIRVVSAALRDTMRSTDIAGRYGGEEFSVILVNTDGKNAMNFAERLRTRIENLEVTH-E 254

Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           G  I  TIS G+AE   K +     I RAD ALY +K+ GRNR   + 
Sbjct: 255 GRDIRFTISLGLAELDKKIKDHKEWIERADTALYASKQGGRNRATTYE 302


>gi|77163852|ref|YP_342377.1| two component diguanylate cyclase [Nitrosococcus oceani ATCC 19707]
 gi|254435846|ref|ZP_05049353.1| HDOD domain family [Nitrosococcus oceani AFC27]
 gi|76882166|gb|ABA56847.1| response regulator receiver modulated diguanylate cyclase
           [Nitrosococcus oceani ATCC 19707]
 gi|207088957|gb|EDZ66229.1| HDOD domain family [Nitrosococcus oceani AFC27]
          Length = 661

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 88/176 (50%), Gaps = 9/176 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L +L ++  R+ Q++  D L+GL N    +  +              S +  D+D+FK++
Sbjct: 459 LADLAVANRRLGQMAMTDSLTGLPNRRYAMERMEQAWAEYERNQTPFSCLVMDLDFFKRV 518

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH +GD V+  +++       +   + RLGGEEF      +   EA  +A  LR+ 
Sbjct: 519 NDQYGHEIGDSVLLEIANVFRGSARSSDIICRLGGEEFLVVCPHTVATEAFQVAERLRRA 578

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           +E     +    S+ +++S G+A      +  + +   ADQALY AK++GRNRV  
Sbjct: 579 VEEHSWTMLDSTSV-LSVSIGLAASSEGMQHWNDLYRLADQALYQAKRNGRNRVCM 633


>gi|253996340|ref|YP_003048404.1| PAS/PAC/GAF sensor-containing diguanylate cyclase [Methylotenera
           mobilis JLW8]
 gi|253983019|gb|ACT47877.1| diguanylate cyclase with PAS/PAC and GAF sensors [Methylotenera
           mobilis JLW8]
          Length = 737

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 14/188 (7%)

Query: 84  YISGSI--LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           Y+   I  + E    +    Q +  D L+ L N    +S L         +   ++++F 
Sbjct: 552 YLIAQIEDITERKYQHEEAEQFAYHDPLTNLPNRRMLLSRLHHALMQTERFYRAMALMFL 611

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAA 193
           D+D+FK IND+ GH VGD ++  ++++L+    +   V R GG+EF       S  ++A 
Sbjct: 612 DLDHFKNINDSLGHDVGDMLLKEVANRLLKCVRSIDTVSRHGGDEFVIVLSEISHTEDAE 671

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSG 251
           ++A  +    +  +  + +G  I ++ S GIA   H++P     ++  AD+A+Y AK +G
Sbjct: 672 LVAQKIIASFK--EPILINGHEIMMSTSIGIAVSKHEKPTKADELMKHADKAMYEAKGAG 729

Query: 252 RNRVVCFS 259
           RNR     
Sbjct: 730 RNRYCFHD 737


>gi|149909188|ref|ZP_01897845.1| Putative diguanylate cyclase (GGDEF domain) [Moritella sp. PE36]
 gi|149807712|gb|EDM67658.1| Putative diguanylate cyclase (GGDEF domain) [Moritella sp. PE36]
          Length = 446

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 86/176 (48%), Gaps = 9/176 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           KEL ++  R   L+  D ++G+ N  +F+            Y    +++  D+D FKQIN
Sbjct: 263 KELEVALARAEHLATTDVMTGIPNRRSFMDQAEKRHAEWLRYKRPYALLMIDLDTFKQIN 322

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHP GD+V+  ++  L         +GR+GGEEF A  +G SE  A  L   +R  I
Sbjct: 323 DTYGHPAGDQVLISVAAVLQQHTRCEDIIGRIGGEEFCALLVGVSEVGAINLTERIRAEI 382

Query: 204 ENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCF 258
               I    G SI +T S G+      +E    ++   DQ LY AK  GRNRV  +
Sbjct: 383 AKLPIEF-GGQSIPVTASFGLVPPESLQEDFDEVLKHGDQMLYQAKNEGRNRVCIY 437


>gi|121535227|ref|ZP_01667042.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Thermosinus carboxydivorans Nor1]
 gi|121306218|gb|EAX47145.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Thermosinus carboxydivorans Nor1]
          Length = 553

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 80/181 (44%), Gaps = 12/181 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            + +         + QLS  D L+ + N   F       I        K S+V  DID F
Sbjct: 375 ATDVTRYKKMEEELRQLSVTDSLTNVYNRRYFVQKLEEEIERAKRAGSKFSLVMLDIDRF 434

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND FGH  GD V+  +++ +         + R GGEEF      ++  +A +L  +L
Sbjct: 435 KSINDRFGHNAGDLVLKSMAEMIKNRIRKIDTLARWGGEEFVMLLPETTVNKAVVLVEEL 494

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           R+ +    I         +T S G+   C  + I T++ R D  +Y AK +GRN V  +S
Sbjct: 495 RESLSQMDIPGVG----RVTASFGVVGYCPGDTIDTLMQRVDALMYEAKAAGRNCVR-YS 549

Query: 260 D 260
           D
Sbjct: 550 D 550


>gi|71280812|ref|YP_270895.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71146552|gb|AAZ27025.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 477

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 71/192 (36%), Positives = 108/192 (56%), Gaps = 11/192 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GS 124
           V++S  I+LL+ +I    ++++ +   ++ +L+  D L+ L N  +F   L         
Sbjct: 288 VLLSTVITLLISFIIVLYVRKIHL---KLDKLASNDDLTNLPNRRSFHDELAKQLLLKER 344

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           YN +LS++F DID FK++ND  GH VGDKV+  L++ L        FV R GGEEF    
Sbjct: 345 YNSELSLLFIDIDNFKKVNDTKGHDVGDKVLKSLANVLNGNVRKSDFVARWGGEEFIILL 404

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
           +GS   +A ++A  LR  I NS+ ++S      +TIS G     +++ I TI+ RAD AL
Sbjct: 405 IGSDINQAQVIAEQLRSQIANSK-HLSQYAQQQVTISLGATSVTNEDNIDTILKRADLAL 463

Query: 245 YVAKKSGRNRVV 256
           Y AK  G+N VV
Sbjct: 464 YKAKSKGKNCVV 475


>gi|330502303|ref|YP_004379172.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328916589|gb|AEB57420.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 489

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 8/171 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           +     RI+ L+  D L+ L N   F       +      +  L  V  D+D FKQIND 
Sbjct: 317 IRRYQQRIAALATTDSLTNLPNRRGFELHVEQALQEAQRDSSPLCAVMLDLDNFKQINDR 376

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD+V+   +++L         + R GGEEF      +    A  LA  LR+   +
Sbjct: 377 HGHLAGDEVLRSFAERLRAALRQSDILCRWGGEEFILLLKNTDRHAAHELAEKLRQHCAD 436

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  +  G ++ +T+S G+++    E +  ++ R D+ALY AK++GR+RV 
Sbjct: 437 QRYPM-DGEALQVTVSLGLSQWQPGEALHDLLSRTDRALYRAKQAGRDRVC 486


>gi|94263497|ref|ZP_01287309.1| GGDEF [delta proteobacterium MLMS-1]
 gi|93456135|gb|EAT06278.1| GGDEF [delta proteobacterium MLMS-1]
          Length = 525

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 72/263 (27%), Positives = 126/263 (47%), Gaps = 19/263 (7%)

Query: 13  LCHEKNLESFSP--HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           L H++  +   P  H+F     +    +   ++ I ++    +G    Y  +  LV    
Sbjct: 262 LRHDRRFQQQLPDEHSFTWKVMVGNQPWAVNLLRIHDVEQQPVGYLISYAPDNFLVALRK 321

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------- 123
             I+S+ ++ LL    G +L  L  S + + +L+  D L+GL N  +F+  LG       
Sbjct: 322 EFIVSLLVAWLLAAGLGLLLVLLARSRDEMLRLATTDPLTGLANRRSFMDRLGLEQERFK 381

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            +   + ++  DID+FK++ND  GH VGD+V+   +  +         VGRLGGEEFA  
Sbjct: 382 RFGNPVGLLMLDIDFFKKVNDTHGHHVGDEVLGQFATLMRQNLRHVDLVGRLGGEEFAVV 441

Query: 184 ALGSSEQEAAILANDLRKIIEN--------SQINISSGPSIHITISAGIAERCHKEP-IS 234
             G+  +     A  LR  +           + + S+G  ++IT+S G+A     +  + 
Sbjct: 442 LPGADLKGTLHFAERLRCGVGERLQGEVCGHRFSTSAGI-LNITVSIGVAVLQPGDDGVE 500

Query: 235 TIIYRADQALYVAKKSGRNRVVC 257
            +++RAD A+Y AK++GRNR+  
Sbjct: 501 PVLHRADTAMYRAKENGRNRIEV 523


>gi|316934369|ref|YP_004109351.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
 gi|315602083|gb|ADU44618.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
          Length = 355

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 62/188 (32%), Positives = 100/188 (53%), Gaps = 9/188 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDY 138
           S   +  L +S   I   S  D L+GL N   F         S  + ++ LS++  DID+
Sbjct: 160 SKQEIANLQLSLEAIRNESLTDPLTGLGNRKHFDRTVHDALRSAAASHQPLSLLMMDIDH 219

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK  ND +GH  GD+V+  +   L        F  R GGEEFA     +  ++A I+A++
Sbjct: 220 FKSFNDTYGHLTGDQVLRLVGLTLKQSIKGQDFTARYGGEEFAVVLPNTPLRQAIIVADN 279

Query: 199 LRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +R+ + + ++   S   I   +T+SAG++     + + ++I RAD  LY AK++GRNRVV
Sbjct: 280 IRRQVMSKELKKKSTGEILGRVTLSAGVSTLKPNDDVESLIGRADACLYAAKRNGRNRVV 339

Query: 257 CFSDIENN 264
           C +D E++
Sbjct: 340 CETDPEHS 347


>gi|56475524|ref|YP_157113.1| sensory box/GGDEF family protein [Aromatoleum aromaticum EbN1]
 gi|56311567|emb|CAI06212.1| Sensory box/GGDEF family protein [Aromatoleum aromaticum EbN1]
          Length = 1008

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQ 141
            + +   +  RI  L+  D L+GL N   F              + K++++F D+D+FK 
Sbjct: 529 DITDRKEAQARIEYLAHHDALTGLPNRVLFRDRFALATAWAERAHAKVALLFVDLDHFKT 588

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GHPVGD ++  ++ +L         V RLGG+EF  A     + +A   A    K
Sbjct: 589 INDTLGHPVGDGLLQGVALRLRECLRETDTVSRLGGDEFLIALTDIRDPQAINSATA--K 646

Query: 202 IIENSQINIS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I +         G  +  T+S GIA      E   T++  AD A+Y AK++GRN    ++
Sbjct: 647 IFDTLTRPFELEGHELTNTMSIGIAIWPDDGEDFDTLLKNADTAMYQAKRAGRNTWRFYT 706

Query: 260 DIENNTC 266
           +  N   
Sbjct: 707 EQMNANA 713


>gi|300690006|ref|YP_003751001.1| diguanylate kinase, GGDEF domain [Ralstonia solanacearum PSI07]
 gi|299077066|emb|CBJ49684.1| putative Diguanylate kinase, GGDEF domain [Ralstonia solanacearum
           PSI07]
          Length = 467

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 103/228 (45%), Gaps = 9/228 (3%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           ++A  IF    FL   G+   +          S   +   ++  +   +   L+EL  + 
Sbjct: 240 WLAHAIFAGGFFLLSYGVIQAFRTTRSFSTIYSQEELMARLAEAMDR-TERALQELQRTN 298

Query: 98  NRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++  L+  D L+G  N   FI                 S++  D+D+FK IND++GH V
Sbjct: 299 QKLEHLAATDPLTGAANRRQFIERVETEIARAKRGGAPFSLLALDLDHFKVINDSYGHQV 358

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+     +            R+GGEEF      ++   A  +A  +R+ I  S   I
Sbjct: 359 GDEVLKGFVKKCFDAIRPYDGFARVGGEEFMVLLPQAALDAAHSVAERVRRAIAESAFEI 418

Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
             G S+ +T+S GI++  H  E + +I+  AD+ LY AK  GRNRV+ 
Sbjct: 419 GVGRSVGLTVSVGISQFGHDGESLDSILRVADERLYRAKHEGRNRVIA 466


>gi|296274592|ref|YP_003657223.1| extracellular sensor-containg diguanylate cyclase [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098766|gb|ADG94716.1| diguanylate cyclase with extracellular sensor [Arcobacter
           nitrofigilis DSM 7299]
          Length = 709

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 103/227 (45%), Gaps = 23/227 (10%)

Query: 48  IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK----------ELFISY 97
           IF  ++ +    G++Y LV  +S  I +I   +L+ Y +  I+K          ++ +  
Sbjct: 488 IFSKWVPIKYQKGIDYDLVWKIS--IGAILFIILVVYWNRKIIKTNRLLQEAKKDIEVKN 545

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
             + +L+  D L+ L N       L         +N    I   DIDYFK++ND FGH  
Sbjct: 546 KELEKLAITDKLTNLYNRRKLDELLQHELNRSERFNHTFGIAILDIDYFKKVNDTFGHQA 605

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDKV+  LS+ L     T  FVGR GGEEF      S +     L   +R  IEN     
Sbjct: 606 GDKVLIELSNILKTHIRTTDFVGRFGGEEFVIICPESQKDGVYNLMESIRLDIENYTFKD 665

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                  IT S G+      +   +++ RAD ALY AK  GRNRVV 
Sbjct: 666 IG----KITTSFGVTLSKENDTSESLLKRADIALYEAKSLGRNRVVI 708


>gi|257091769|ref|YP_003165410.1| response regulator receiver modulated diguanylate cyclase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257044293|gb|ACV33481.1| response regulator receiver modulated diguanylate cyclase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 632

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 9/176 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL  S  R+   +  D L+ L N  A + SL  +        + ++ +  D+D+FK +ND
Sbjct: 451 ELATSNRRLEHAAMTDLLTDLPNRRAGMESLARFWSASMRTGQPVAALMIDVDFFKSVND 510

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD+V+  ++  +         V R+GGEEF      +  + A + A  LR++++
Sbjct: 511 RHGHAVGDRVLQEVARAIQSAARKDDSVSRIGGEEFLLVCHDADPRAALLAAERLRRMVK 570

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +I++  G  I +++S G+A R    E    ++  AD+ALY AK +GR+RV  F+
Sbjct: 571 ALKISV-GGVDIQVSVSVGVASREAGMESEDDMLRAADKALYAAKNAGRDRVCLFA 625


>gi|220933286|ref|YP_002512185.1| diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994596|gb|ACL71198.1| diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 451

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 62/172 (36%), Positives = 88/172 (51%), Gaps = 8/172 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
           L  + +   + + ID L+G+ N  AF   L         +N  L+++ +D+D FK IND+
Sbjct: 280 LRRTMDDERKQALIDQLTGVPNRQAFDERLAQEYSRWKRFNTPLALIMWDVDRFKLINDS 339

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GDKVI  ++ +L         V R GGEEF     G+S Q+A  +A  +R  I  
Sbjct: 340 YGHKAGDKVIRAVAQKLKERIRETDMVARYGGEEFVMLLTGASGQDALAIAEKIRAEIAG 399

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +   G  + ITISAGIA     +   T    AD+ALY AK +GRNR V 
Sbjct: 400 LGFHFR-GERVPITISAGIALFAEGDTPETAFDNADRALYEAKNTGRNRCVL 450


>gi|169831989|ref|YP_001717971.1| response regulator receiver modulated diguanylate cyclase
           [Candidatus Desulforudis audaxviator MP104C]
 gi|169638833|gb|ACA60339.1| response regulator receiver modulated diguanylate cyclase
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 314

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 9/186 (4%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           +G     + ++L  +  +I+ L+  D L+GL N    +  L             + ++F 
Sbjct: 116 VGIRIIELEEKLKEANKKIAALASTDALTGLPNRRVLLEHLEALVARGIREGRPVGVIFM 175

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D+FK+IND + H  GD V+  ++ +L  V     F+GR GGEEF     G     A  
Sbjct: 176 DLDHFKRINDEYSHLAGDTVLQDVAKKLRAVKRVYDFLGRYGGEEFLILVEGVDIVTAGA 235

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGR 252
           +A   R+ I+++ + + SG S+ +T S G+        + +  +I  ADQALY AK  GR
Sbjct: 236 IAERFRQSIKSTPVKLDSGVSLRVTASFGVTALNPAAPQSVDRLIAEADQALYSAKAQGR 295

Query: 253 NRVVCF 258
           +RV CF
Sbjct: 296 DRVCCF 301


>gi|194365005|ref|YP_002027615.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
 gi|194347809|gb|ACF50932.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
          Length = 554

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 107/225 (47%), Gaps = 10/225 (4%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISIT-ISLLLGYISGSILKELFISYN 98
           A     A + L  +         ++L   +  + +S+T + ++  Y     L  L    +
Sbjct: 319 ALAGLAALVPLLVMIAADASSAGWLLEYRVEALQLSVTWLLMMAAYAMNQRLGRLRQQRD 378

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
            + QL+  D L+GL N  A +  L  +          L I F DID FK IND  GH VG
Sbjct: 379 ELRQLAETDGLTGLPNRRAGLQQLARHLAQVDRERGPLVIGFLDIDLFKDINDRHGHAVG 438

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++  L     +   V R+GGEEF     G   + A+   + LR+ I  +   + 
Sbjct: 439 DQVLVAVARALRTAVRSQDEVVRMGGEEFLLLMPGMPRETASARLDRLRQRIIEAGQALQ 498

Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             P + +T S G+A+    E  ++ ++ RAD A+YVAK++GRNRV
Sbjct: 499 V-PGLEVTASIGLAQWRPGEDDLAALLRRADHAMYVAKRAGRNRV 542


>gi|157374521|ref|YP_001473121.1| response regulator receiver protein [Shewanella sediminis HAW-EB3]
 gi|157316895|gb|ABV35993.1| response regulator receiver protein [Shewanella sediminis HAW-EB3]
          Length = 302

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 64/186 (34%), Positives = 90/186 (48%), Gaps = 15/186 (8%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +++   +S  I+  L    + +  ++  D L+ L N    I +          +N  LSI
Sbjct: 112 AIVTARVSTQIM--LKQKSDELRNMALHDQLTQLYNRHFLIEAANQKMAESIRHNNPLSI 169

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FKQ+ND FGH  GD V+  ++  L         V R GGEEF A     S   
Sbjct: 170 LMIDIDHFKQVNDQFGHQAGDSVLQAVAKALAESNRKEDVVARFGGEEFVALFEHCSIDS 229

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250
           A   A  LR  IE           I IT S G+AE R ++E    ++ RAD+A+Y AK+ 
Sbjct: 230 AEEKAERLRDKIERLMP-----AGIRITASFGVAELRPNEESFEQLLARADEAVYRAKEL 284

Query: 251 GRNRVV 256
           GRNRVV
Sbjct: 285 GRNRVV 290


>gi|300113126|ref|YP_003759701.1| response regulator receiver modulated diguanylate cyclase
           [Nitrosococcus watsonii C-113]
 gi|299539063|gb|ADJ27380.1| response regulator receiver modulated diguanylate cyclase
           [Nitrosococcus watsonii C-113]
          Length = 641

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 92/183 (50%), Gaps = 9/183 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L +L ++  R+ Q++  D L+GL N    +  +              S +  D+DYFKQ+
Sbjct: 459 LADLAVANRRLGQMAMTDSLTGLPNRRYAMERMEQAWAEYERNQNPFSCLVIDLDYFKQV 518

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD V+  +++       +   + RLGGEEF A    ++  EA  +A  LR+ 
Sbjct: 519 NDQYGHEAGDGVLREIANVFRSSARSSDIICRLGGEEFLAVCPDTASAEAFHVAERLRRA 578

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +E  +   S   +  ++IS G+A    + +  + +   ADQALY AK+SGRNRV   S  
Sbjct: 579 VEEHRWT-SLNSTGALSISIGLATSLEEMQHWNDLYRLADQALYQAKRSGRNRVCMASSP 637

Query: 262 ENN 264
           +  
Sbjct: 638 DRK 640


>gi|114048947|ref|YP_739497.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113890389|gb|ABI44440.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 324

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 76/272 (27%), Positives = 124/272 (45%), Gaps = 29/272 (10%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63
              +  + WL  ++ +ES     FM+    F S      +F       +    P  G   
Sbjct: 60  RFPELPATWL--KQKMES----VFMLKNRAFISWEQRPYVFQ------FKNYRPITGRAD 107

Query: 64  ILVENLSLVIISIT------ISLLLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNH 115
            + +N++L+ ++        IS+++  ++   +   +L  +  ++ +LS+ D L+ L N 
Sbjct: 108 FMYQNVTLLPLASLTGKITHISVIIYDVTDIAVNKLQLKAANEQLERLSQTDGLTQLHNR 167

Query: 116 SAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
             +   L         Y+   S+V  DID+FK+IND +GH  GDKVI  ++  L      
Sbjct: 168 RHWQQCLEHEFDLYARYSGMSSLVMIDIDHFKRINDTYGHVAGDKVIQHIAHILSHSLRE 227

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
              VGR GGEEFA     +   +A      LR+ I +S I +  G  I +T+S G+ E  
Sbjct: 228 TDCVGRYGGEEFAVVMPNTCGADALNFTERLRERIADSTI-VYEGLKIKVTVSLGVCEIG 286

Query: 229 -HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            H    S  I  +D+ALY AK+ GRN  V  +
Sbjct: 287 KHITSSSGWISCSDKALYEAKQKGRNCSVLHT 318


>gi|94263138|ref|ZP_01286956.1| GGDEF [delta proteobacterium MLMS-1]
 gi|93456509|gb|EAT06623.1| GGDEF [delta proteobacterium MLMS-1]
          Length = 525

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 73/263 (27%), Positives = 125/263 (47%), Gaps = 19/263 (7%)

Query: 13  LCHEKNLESFSP--HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           L H++  +   P  H+F     +    +   ++ I ++    +G    Y  +  LV    
Sbjct: 262 LRHDRRFQQQLPDEHSFTWKVMVGNQPWAVNLLRIHDVEQRPVGYLISYAPDNFLVALRK 321

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------- 123
             I+S+ ++ LL    G +   L  S + + +L+  D L+GL N  +F+  LG       
Sbjct: 322 EFIVSLLVAWLLAAGLGLLFVLLARSRDEMVRLATTDPLTGLANRRSFMDRLGLEQERFK 381

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            +   + ++  DID+FK++ND  GH VGD+V+   +  +         VGRLGGEEFA  
Sbjct: 382 RFGNPVGLLMLDIDFFKKVNDTHGHHVGDEVLGQFATLMRQNLRHVDLVGRLGGEEFAVV 441

Query: 184 ALGSSEQEAAILANDLRKIIEN--------SQINISSGPSIHITISAGIAERCHKEP-IS 234
             G+  +     AN LR  +           + + S+G  ++IT+S G+A     +  + 
Sbjct: 442 LPGADLEGTLHFANRLRCGVGERLQGEVCGHRFSTSAGI-LNITVSIGVAVLQPGDDGVE 500

Query: 235 TIIYRADQALYVAKKSGRNRVVC 257
            ++ RAD ALY AK++GRNR+  
Sbjct: 501 PVLRRADTALYRAKENGRNRIEV 523


>gi|218887723|ref|YP_002437044.1| diguanylate cyclase with extracellular sensor [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758677|gb|ACL09576.1| diguanylate cyclase with extracellular sensor [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 474

 Score =  204 bits (520), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 65/213 (30%), Positives = 102/213 (47%), Gaps = 17/213 (7%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           ++ +T     +Y LV  ++    ++ + ++L Y      + L      + +L+R D L+ 
Sbjct: 271 HVPITAQTSADYWLVARVA-GFFALLVGVVLWY-----NRRLKRMNAVLERLARTDPLTD 324

Query: 112 LLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           L N S         +     Y    SIV  DID+FK++ND  GH  GD+ +   +  +  
Sbjct: 325 LPNRSRLNELFRREVERAQRYRRPFSIVILDIDHFKRVNDELGHLAGDRTLQVFAGVVRD 384

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                  VGR GGEEF      ++ +EA  LA  LR  +  +Q     G  IH T+SAG+
Sbjct: 385 SVRGTDTVGRWGGEEFLVLCPETTAEEAVQLAERLRGSLRATQF---EGGRIH-TLSAGV 440

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           A     + + T+++RAD ALY AK  GR+RV  
Sbjct: 441 AAFREGDSVDTLLHRADTALYRAKNGGRDRVEV 473


>gi|332526563|ref|ZP_08402673.1| putative GGDEF domain signaling protein [Rubrivivax benzoatilyticus
           JA2]
 gi|332110829|gb|EGJ11006.1| putative GGDEF domain signaling protein [Rubrivivax benzoatilyticus
           JA2]
          Length = 562

 Score =  204 bits (520), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 88/179 (49%), Gaps = 13/179 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           +L  +   +++L+  D L+GL N  AF         +         ++  DID+FK +ND
Sbjct: 385 QLSQANEELARLAAQDALTGLANRRAFEQRAAEEEARCRRSGTGFGLLLLDIDHFKDVND 444

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKII 203
            FGH  GD+V+  ++  L         V RLGGEEFA       E  +   +A  +R+ I
Sbjct: 445 RFGHATGDQVLQQIARLLESATRETDLVARLGGEEFAVLLPELGESADTLRVAEKIRQAI 504

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTI-IYRADQALYVAKKSGRNRVVCFSDI 261
           + +      GP   +T+S G A+    +    + + RAD+ALY AK++GRNR V   D+
Sbjct: 505 QAAHF----GPVGEVTVSVGCAKGDGNDTPVQLALRRADEALYKAKQAGRNRCVAADDL 559


>gi|330982979|gb|EGH81082.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 232

 Score =  204 bits (520), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 12/182 (6%)

Query: 84  YIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFD 135
           Y+S    +        ++ +++  D L+GL N  +   +L           +  S++  D
Sbjct: 54  YVSISQDVTTRLGREQKLLEIAHSDPLTGLDNRRSAEHTLERQIPAVSMSGKPFSLIICD 113

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK +ND +GHP GD VI  ++  L           R GGEEF      SS ++AA L
Sbjct: 114 IDHFKAVNDRYGHPAGDSVITSVAAILKQRIRLLDVAARWGGEEFLILVPDSSLKQAAEL 173

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A  +RK +E+  I      +  +TIS G+AE    E  +++I RAD+ALY AK+ GRNRV
Sbjct: 174 AERIRKSVESLVIP----ETGSVTISLGVAELSAGETAASLIQRADKALYQAKRLGRNRV 229

Query: 256 VC 257
            C
Sbjct: 230 EC 231


>gi|113968915|ref|YP_732708.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|117919023|ref|YP_868215.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|113883599|gb|ABI37651.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|117611355|gb|ABK46809.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 324

 Score =  204 bits (520), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 76/272 (27%), Positives = 124/272 (45%), Gaps = 29/272 (10%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63
              +  + WL  ++ +ES     FM+    F S      +F       +    P  G   
Sbjct: 60  RFPELPATWL--KQKMES----VFMLKNRAFISWEQRPYVFQ------FKNYRPITGRAD 107

Query: 64  ILVENLSLVIISIT------ISLLLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNH 115
            + +N++L+ ++        IS+++  ++   +   +L  +  ++ +LS+ D L+ L N 
Sbjct: 108 FMYQNVTLLPLASLTGKITHISVIIYDVTDIAVNKLQLKAANEQLERLSQTDGLTQLHNR 167

Query: 116 SAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
             +   L         Y+   S+V  DID+FK+IND +GH  GDKVI  ++  L      
Sbjct: 168 RHWQQCLEHEFDLHARYSGMSSLVMIDIDHFKRINDTYGHVAGDKVIQHIAHILSHSLRE 227

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
              VGR GGEEFA     +   +A      LR+ I +S I +  G  I +T+S G+ E  
Sbjct: 228 TDCVGRYGGEEFAVVMPNTCGADALNFTERLRERIADSTI-VYEGLKIKVTVSLGVCEIG 286

Query: 229 -HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            H    S  I  +D+ALY AK+ GRN  V  +
Sbjct: 287 KHITSSSGWISCSDKALYEAKQKGRNCSVLHT 318


>gi|332308157|ref|YP_004436008.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175486|gb|AEE24740.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 318

 Score =  204 bits (520), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 120/245 (48%), Gaps = 23/245 (9%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLT-PFYGLEYILVENLSLVIISIT------ISLLLG 83
           FS+   +F   VI+    +LF  G   P       + +N+++  ++        + +++ 
Sbjct: 76  FSLKSPVF---VIWEQRPYLFRFGANRPITSPSQFMYQNITIFPLASLSGQVDQVCIVVY 132

Query: 84  YISGSILKELFI--SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFF 134
            ++   + +  +    + + +LSR+D L+G+ N   +        ++        S++  
Sbjct: 133 DVTDQAVSKQAVDNLNDELQRLSRVDGLTGIYNRRYWEEQFDREFKRNLRTPGESSVIML 192

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+INDN+GHP GD+VI  L+  +  V       GR GGEEFA     ++     +
Sbjct: 193 DIDHFKKINDNYGHPAGDEVIRQLAQLIEDVSRETDICGRYGGEEFAILLPDTASANVMV 252

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGR 252
           LA  +R  +E  +I      +I  T+S GIA+      + I   +  AD+ALY AKK+GR
Sbjct: 253 LAQRIRASVEKLKIEYEQ-HTISFTVSLGIAQFNTAFGQHI-QWLEEADKALYQAKKNGR 310

Query: 253 NRVVC 257
           N+V+ 
Sbjct: 311 NQVII 315


>gi|167032524|ref|YP_001667755.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida GB-1]
 gi|166859012|gb|ABY97419.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida GB-1]
          Length = 1098

 Score =  204 bits (520), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 16/197 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
            ++   + +L  +  +I  L+  D L+ L N +  +  L         +N + +++F D+
Sbjct: 641 LLNARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDL 700

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS------EQ 190
           D+FK IND+ GHPVGD V+  ++ +L         V RLGG+EF     G        E+
Sbjct: 701 DHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSRELVEE 760

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKK 249
           +   LA+ LR+++   +     G  + +T S G+A    H    + ++ RAD ALY AK 
Sbjct: 761 KVRELADTLRELLA--EPMSLDGQRLQVTPSIGVALIPDHGATPADLLKRADIALYRAKD 818

Query: 250 SGRNRVVCFSDIENNTC 266
           SGRN    F        
Sbjct: 819 SGRNTTQLFHTTMQKAA 835


>gi|126176093|ref|YP_001052242.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           baltica OS155]
 gi|125999298|gb|ABN63373.1| diguanylate cyclase [Shewanella baltica OS155]
          Length = 628

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 11/183 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL     ++++ S ID L+G+ N SAF   L             ++++  DID FK I
Sbjct: 441 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLIAESRISRRQETPIALLMLDIDRFKLI 500

Query: 143 NDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD+ +  ++  L          V R GGEEFA     ++E  A  +A  +R 
Sbjct: 501 NDRFGHLAGDEALRTIAQTLQQHLKRPTDLVSRYGGEEFAIILPNTAEDGALQVAETIRD 560

Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +       G +I +TIS G++     + +  + ++ +AD+ALY AK  GRN+V  FS
Sbjct: 561 AVASLHFEW-EGVAIPLTISIGVSADIVTNDQHSTKLLEQADKALYQAKNGGRNQVSLFS 619

Query: 260 DIE 262
            ++
Sbjct: 620 SVQ 622


>gi|94263467|ref|ZP_01287280.1| PAS:GGDEF:EAL:GAF [delta proteobacterium MLMS-1]
 gi|93456197|gb|EAT06336.1| PAS:GGDEF:EAL:GAF [delta proteobacterium MLMS-1]
          Length = 935

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 80/190 (42%), Gaps = 16/190 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           + + +       I +L+  D L+ L N   F   L           +  +++F D+D FK
Sbjct: 484 TDITDKKNREQEIHRLAFYDPLTRLPNRRLFFDRLEQAISASARSGQHGAVLFLDLDNFK 543

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ------EAAI 194
            +ND  GH VGD ++   + ++         V R GG+EF       S        +A  
Sbjct: 544 TLNDTRGHDVGDLLLTMAAKRIQETVREDDTVSRQGGDEFMVLLNNLSPDRHAAISQAGR 603

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRN 253
           +A  +R  ++  Q     G   HI +S GI     H   +  ++ RAD A+Y AK +GRN
Sbjct: 604 VAEKIRAALD--QPFDLDGYEHHIGVSIGIGLFMGHDTSVDELLKRADAAMYQAKNAGRN 661

Query: 254 RVVCFSDIEN 263
           +V  F     
Sbjct: 662 QVRFFDPEMQ 671


>gi|209548893|ref|YP_002280810.1| response regulator PleD [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534649|gb|ACI54584.1| response regulator receiver modulated diguanylate cyclase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 457

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 89/175 (50%), Gaps = 9/175 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
            L  S  +  +L+  D L+GL N     + L        +    LS++  DID FKQ+ND
Sbjct: 280 RLRASVKQTIELAVTDPLTGLYNRRYLDNHLNVLFNRSMARGRPLSVLITDIDRFKQVND 339

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+   ++++           R GGEEF      +S + AA +A  LR  +E
Sbjct: 340 TYGHDGGDEVLREFANRVRSTIRGADLACRYGGEEFVVVMPDTSPEIAAAVAERLRAAVE 399

Query: 205 NSQINI-SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           N+   +  +G ++++T S GIA R         ++ +AD ALY AK +GRNRVV 
Sbjct: 400 NAPFLLKHAGEALNVTASFGIASRIGSVLTPDQLMKQADLALYEAKNTGRNRVVA 454


>gi|261415029|ref|YP_003248712.1| diguanylate cyclase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261371485|gb|ACX74230.1| diguanylate cyclase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302327921|gb|ADL27122.1| HAMP/GGDEF domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 566

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 8/178 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +  ++  +SR D L+ L N           +     + +  SI+F DID+FK +ND
Sbjct: 380 ELEQANKKLDLISRTDELTQLPNRRDMHRTIEKEVDRANRFKKAFSIIFIDIDHFKDVND 439

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD V+  ++  +  +      + R GGEEF      +  ++AA +A   RK IE
Sbjct: 440 TYGHAAGDAVLKSVASTIRSLLRKYDVLARYGGEEFLTLLPETELKDAAHVAERFRKQIE 499

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           N  I    G  I +TI+ G+A+          I  AD+ALY  K+ GRNRV+ ++D +
Sbjct: 500 NQTIFF-GGQEIKVTITLGVAQFDSGLGAERCIQLADKALYEGKEHGRNRVILWTDDQ 556


>gi|239995920|ref|ZP_04716444.1| GGDEF domain protein [Alteromonas macleodii ATCC 27126]
          Length = 329

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 113/246 (45%), Gaps = 21/246 (8%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLT-PFYGLEYILVENLSLVIISI------TISLLLG 83
           F++   +FI   I+    +LF  G   P       + +N+++  I           +L+ 
Sbjct: 83  FNLKSPVFI---IWEQRPYLFKFGCNRPVTSAAEFMYQNVTMFPIVDKRGNVERFCMLVY 139

Query: 84  YISGSIL--KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
            ++   L  + +      +   SR+D L+GL N   +               +  + +  
Sbjct: 140 DVTEQALGKRGMEHLNEELKTASRVDGLTGLYNRRYWQERFDEMHKLCVRREKPSTALML 199

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+IND +GH  GDKVI  L+  +          GR GGEEFA     SS ++A I
Sbjct: 200 DIDHFKRINDTYGHQAGDKVIKMLAALIKRCVRETDLAGRYGGEEFAIILNDSSVEDAKI 259

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           +A  +R++ +   +    G SI  T+S G+A+     +     +  ADQALY AK++GRN
Sbjct: 260 VAERIRQLAQRLVVEH-EGESISFTVSLGLAQFSPDFKGAMAWLECADQALYEAKENGRN 318

Query: 254 RVVCFS 259
           +   ++
Sbjct: 319 QYRIYA 324


>gi|163781840|ref|ZP_02176840.1| sensory box/GGDEF family protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883060|gb|EDP76564.1| sensory box/GGDEF family protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 959

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 11/178 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
             + +++  D L+GL N +     +            K++I+F D+DYFK +ND  GH V
Sbjct: 527 EELKKMAYFDPLTGLPNRTLLRDRIESAIHFANRNGSKVAILFIDLDYFKTVNDTLGHDV 586

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQIN 209
           GD+++  ++ +L  VF     V R GG+EF A        ++   +A  +  +   S   
Sbjct: 587 GDRILVQVAKRLSSVFRETDTVARFGGDEFVAVIPDVRDLKDVVQVAERILSLF--STPF 644

Query: 210 ISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            ++G  I+++ S GIA      E  + +I  AD A+Y AK+ G++    F++  N+  
Sbjct: 645 EANGEDIYLSASVGIAVYPDNGENPTELIKNADMAMYRAKEEGKSNFSFFTEEMNSKA 702


>gi|158339038|ref|YP_001520215.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158309279|gb|ABW30896.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
          Length = 420

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/252 (27%), Positives = 117/252 (46%), Gaps = 17/252 (6%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL-------L 81
           +  +I F +   T+  I    L    L P Y L+   V++L+   +   I L        
Sbjct: 169 LLVAIIF-LLALTIAVICAYALSRSILVPLYRLQE-GVKHLADGNLKYRIKLKTQDEFSR 226

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFF 134
           L     ++   L  S   + +L+ +D L+ + N   F                 +S++  
Sbjct: 227 LANTFNAMAGSLEQSQTDLERLATLDGLTEVYNRREFNRWLSVEFERSRRDEHPVSLIMV 286

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D+FKQ+ND +GH  GD+ +  ++  L         V R GGEEFA     SS +++  
Sbjct: 287 DLDHFKQLNDTYGHQAGDEALCCVAQLLRKEVRPGDIVSRYGGEEFAIILPKSSVEDSVA 346

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           +A+ +R+ I    I ISS   IH+T S G+A      +    ++ +ADQAL+ AKK GRN
Sbjct: 347 VAHRIRREIAIQPIRISSEDRIHLTASLGLATFPSDVQSEEALLRKADQALFQAKKLGRN 406

Query: 254 RVVCFSDIENNT 265
           RV   +++  ++
Sbjct: 407 RVCLATEVSRSS 418


>gi|190891316|ref|YP_001977858.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190696595|gb|ACE90680.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|327194838|gb|EGE61672.1| two-component response regulator protein [Rhizobium etli CNPAF512]
          Length = 457

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 90/175 (51%), Gaps = 9/175 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
            L  S  +  +L+  D L+GL N     + L        +    LS++  DID FKQ+ND
Sbjct: 280 RLRASVKQTIELAVTDPLTGLYNRRYLDNHLNVLFNRSMARGRPLSVLITDIDRFKQVND 339

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+   ++++           R GGEEF  A   +S + AA +A  LR  +E
Sbjct: 340 TYGHDGGDEVLREFANRVRSTIRGADLACRYGGEEFVVAMPDTSPEVAAAVAERLRAAVE 399

Query: 205 NSQINI-SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++   +  +G ++++T S GIA R         ++ +AD ALY AK +GRNRVV 
Sbjct: 400 SAPFMLKHAGQALNVTASFGIASRMGSVLTPDQLMKQADLALYEAKNTGRNRVVA 454


>gi|39935542|ref|NP_947818.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009]
 gi|192291133|ref|YP_001991738.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
 gi|39649395|emb|CAE27917.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris
           CGA009]
 gi|192284882|gb|ACF01263.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
          Length = 355

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 60/186 (32%), Positives = 97/186 (52%), Gaps = 9/186 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           S   +  L +S + I   S  D L+GL N   F  ++           + LS++  DID+
Sbjct: 160 SKQEIANLQVSLDAIRAESLTDPLTGLGNRKHFDRTVQEAIRNAGASQQPLSLLMMDIDH 219

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK  ND +GH  GD+V+  +   L        F  R GGEEFA     +  ++A I+A++
Sbjct: 220 FKSFNDTYGHLTGDQVLRLVGMTLKQSIKGQDFTARYGGEEFAVVLPNTPMRQAIIVADN 279

Query: 199 LRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +R+++ + ++   S   I   +T+SAG++     +    +I RAD  LY AK++GRNRV+
Sbjct: 280 IRRLVMSKELKKKSTGEILGRVTLSAGVSTLKPNDDAEALIERADACLYAAKRNGRNRVI 339

Query: 257 CFSDIE 262
           C +D E
Sbjct: 340 CETDPE 345


>gi|27376066|ref|NP_767595.1| hypothetical protein bll0955 [Bradyrhizobium japonicum USDA 110]
 gi|27349205|dbj|BAC46220.1| bll0955 [Bradyrhizobium japonicum USDA 110]
          Length = 955

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 56/190 (29%), Positives = 87/190 (45%), Gaps = 10/190 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDID 137
           ++   + E   +  R++ ++R D L+ L N + F   +G            ++++ FD+D
Sbjct: 510 VTYEDVTERHKAQARVAHMARHDSLTDLPNRTLFREKMGEGLNQVAIAGGAMAVLCFDLD 569

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND  GH  GD+++ +++ +L    G    V RLGG+EFA    G   Q A  LA 
Sbjct: 570 NFKTVNDRLGHAAGDRLLRWVAARLKENVGEHDTVARLGGDEFAVLQRGPQPQSAEKLAR 629

Query: 198 DLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            L +II +         SIH+ +S GIA    H      ++  AD ALY AK  GR    
Sbjct: 630 RLVEIIGHPPP--LESQSIHVGVSVGIAIAPDHGLDADELMKCADLALYQAKARGRGAYQ 687

Query: 257 CFSDIENNTC 266
            F        
Sbjct: 688 LFEPEMEEEA 697


>gi|118581402|ref|YP_902652.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Pelobacter propionicus DSM
           2379]
 gi|118504112|gb|ABL00595.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Pelobacter propionicus DSM 2379]
          Length = 876

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 17/222 (7%)

Query: 58  FYGLEYILVENLSLVIISITISLL------LGYISGSILKELFISYNRISQLSRIDCLSG 111
           F G   +  E+ S+V + +  +L+      +  +    + E       +  ++  D L+G
Sbjct: 382 FLGEHTVRAEDGSMVEVDLNANLVSYGEQQVICMVLRDISERKRFEGELMHMAHHDALTG 441

Query: 112 LLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           L N + F   L           + L++++ D+D FK IND  GH  GD ++  ++D+L  
Sbjct: 442 LPNRTLFFDRLRQGLYKKERSGKMLAVIYLDLDRFKIINDTLGHHTGDMLLKEVADRLRG 501

Query: 165 VFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
           V      + RLGG+EF        +  ++ ++A  +  +   S         + IT S G
Sbjct: 502 VVRKADTISRLGGDEFTIIIDEIATPADSLLVAEKILHVF--SAPFRLEKHEMFITASMG 559

Query: 224 IAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +       +    ++  AD A+Y AK+ GRN    FS+  N+
Sbjct: 560 VTLYPNDGDTAEKLLKNADTAMYHAKEEGRNTYQFFSEEMNS 601


>gi|77457563|ref|YP_347068.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1]
 gi|77381566|gb|ABA73079.1| putative GGDEF-domain membrane protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 495

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 93/195 (47%), Gaps = 13/195 (6%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLS 130
           ++L++  +   +++       +I   + +D L+ L N   F               + L+
Sbjct: 305 VTLIVLALVNRLIR---RYQEKIHAQATLDSLTELPNRRGFDLLAAQALHEAHREPKPLT 361

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
            +  D+D+FK +ND +GH  GD+V+   +  L         V R GGEEF      +  +
Sbjct: 362 ALLLDLDHFKVLNDTYGHMAGDQVLIGFARDLQSCLRHSDIVCRWGGEEFIVLLKDTDGE 421

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
               +A  +R+ +E  +    +G ++++T+S G       + + +++ RAD A+Y AK++
Sbjct: 422 TGQKIAEKIRQHVEQHEYAY-NGHTLNLTVSIGATTLQPDDTLHSLLSRADHAMYRAKQT 480

Query: 251 GRNRVVCFSDIENNT 265
           GRNR     ++ ++T
Sbjct: 481 GRNRTCV--EMPHST 493


>gi|307726536|ref|YP_003909749.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1003]
 gi|307587061|gb|ADN60458.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1003]
          Length = 312

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 102/201 (50%), Gaps = 11/201 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           L  +  +V + +TIS +       + +E   +  ++ + +  D L+G+ N   F + L  
Sbjct: 113 LTRDREVVAVCVTISDVTH--VSIVQREREEAVAKLQEYADRDGLTGIANRRYFEARLLD 170

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   +S++ FD+D+FK+IND FGH VGD V+  ++ ++  V       GR GG
Sbjct: 171 EYTRWQRYGGDMSVLLFDLDHFKKINDQFGHGVGDTVLRVMAQRVAGVVRAQDTFGRFGG 230

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STI 236
           EEFA     +  ++A  +A  +R+ I ++ + +  G S+ +T S G A      P    +
Sbjct: 231 EEFALLLPCTPLEDAMRVAEKIRRTIADTPVEV-QGTSVPVTASVGGAAARAGLPAYDVL 289

Query: 237 IYRADQALYVAKKSGRNRVVC 257
           I  AD ALY AK+ GRNR V 
Sbjct: 290 INEADAALYSAKRQGRNRCVA 310


>gi|209884911|ref|YP_002288768.1| response regulator protein [Oligotropha carboxidovorans OM5]
 gi|209873107|gb|ACI92903.1| response regulator protein [Oligotropha carboxidovorans OM5]
          Length = 457

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 83/173 (47%), Gaps = 9/173 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDN 145
           L  S     +++  D L+GL N       L +         + L+++  DIDYFK IND 
Sbjct: 281 LRDSVQSTFEMAITDPLTGLHNRRYLEGHLATLAEQAAVRGKPLALMILDIDYFKSINDT 340

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD V+   + ++           R GGEEF      + +  A I+A  LR+ I N
Sbjct: 341 HGHDAGDDVLREFASRIRKSVRGIDLAARYGGEEFVIVMPETDQHVAGIIAERLRRAIAN 400

Query: 206 SQINISSG-PSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVV 256
               I  G   I +TIS G+A      EP+  ++ RADQALY AK  GRNRVV
Sbjct: 401 EAFPIEKGAKQIEVTISVGLATLETKHEPVGDVLKRADQALYRAKHDGRNRVV 453


>gi|77918682|ref|YP_356497.1| sensory box/GGDEF family protein [Pelobacter carbinolicus DSM 2380]
 gi|77544765|gb|ABA88327.1| sensory box/GGDEF family protein [Pelobacter carbinolicus DSM 2380]
          Length = 808

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 11/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + +   +  ++ QL+  D L+GL N +   + L             L++++ D+D FK+
Sbjct: 590 DVSDRKKAQEQVRQLAFYDALTGLPNRTLLANRLDQSLAQAQRDGRMLALLYLDLDRFKE 649

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           IND +GH  GD V+   + +L         V RLGG+EF     G  +  +   +A  + 
Sbjct: 650 INDTYGHAAGDMVLQAAAQRLNSCIRRNDTVARLGGDEFVVLLPGLENVDQPTTVAEKIL 709

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           K+++           +++T S G+     H + +  ++ RAD A+Y AK  GRN   CFS
Sbjct: 710 KVMKV--PFQVESQQLNVTPSIGMVLYPEHGQELGVLLKRADIAMYAAKSRGRNGYACFS 767

Query: 260 DIENN 264
           +    
Sbjct: 768 EEMEK 772


>gi|300705049|ref|YP_003746652.1| hypothetical protein RCFBP_20886 [Ralstonia solanacearum CFBP2957]
 gi|299072713|emb|CBJ44066.1| conserved protein of unknown function, eal-ggdef domains [Ralstonia
           solanacearum CFBP2957]
          Length = 903

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 11/182 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNF 146
             +  ++  L++ D L+GL N + F+  + +          +++++F D+D FK++ND  
Sbjct: 463 RAAEQQLKFLAQRDALTGLYNRAYFLQRMQAVLDGAATDRRQVAVLFLDLDGFKKVNDTA 522

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIEN 205
           GH  GD ++  ++ +L         + RLGG+EF        S  EA  LA  +   I  
Sbjct: 523 GHEAGDHLLRIVAQRLSACVRQGDTLARLGGDEFVVLLDHVRSLDEAERLARRIIAAIA- 581

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            Q   + G   ++  S GIA    H    +T++  AD A+Y AK++GRN+   F++  + 
Sbjct: 582 -QPFSTGGTEYYLGASIGIAVHPEHGRDAATLLRCADAAMYNAKQNGRNQHRVFTERLSQ 640

Query: 265 TC 266
             
Sbjct: 641 RA 642


>gi|163748992|ref|ZP_02156243.1| sensory box/GGDEF domain protein [Shewanella benthica KT99]
 gi|161331368|gb|EDQ02256.1| sensory box/GGDEF domain protein [Shewanella benthica KT99]
          Length = 310

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 7/175 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             L        ++      D L+GL N + F S L         +     ++  D+D FK
Sbjct: 134 RDLSNRIAFIEKLQHQVNTDNLTGLYNRNYFNSKLKDIYHQYKRFGHSFCVLMLDLDRFK 193

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND++GH +GDKV+   S ++  V      + R GGEEF      +  + A  +A+ +R
Sbjct: 194 MVNDSYGHLIGDKVLQEFSKKVQQVLREVDLLARFGGEEFIVLLPNTKLEAAKDVADRIR 253

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           K +   ++   +   +  T+S G+AE    +   +II  AD+ALY AK +GRNRV
Sbjct: 254 KRVSKQRVLSQNHEPVTFTVSIGVAEIGTDDEKESIIKLADEALYRAKNNGRNRV 308


>gi|220907740|ref|YP_002483051.1| diguanylate cyclase/phosphodiesterase with FHA and GAF sensor
           [Cyanothece sp. PCC 7425]
 gi|219864351|gb|ACL44690.1| diguanylate cyclase/phosphodiesterase with FHA and GAF sensor
           [Cyanothece sp. PCC 7425]
          Length = 884

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 87/191 (45%), Gaps = 13/191 (6%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKL 129
            ++++   ISG+I ++       I   +  D L+ L N + FI  L           EKL
Sbjct: 423 VLAMMAVSISGAIQRQHKEQV--IRYQAFHDLLTDLPNRALFIDRLNLALSNAHRSGEKL 480

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++F D+D FK IND  GH VGD+++  ++ +L         + R GG+EF        +
Sbjct: 481 SVLFLDLDRFKTINDTLGHSVGDQLLKAVAHRLTHCLREGDTIARWGGDEFTILLPQIHQ 540

Query: 190 -QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVA 247
             + A  A  +   +E  Q        ++IT S GIA          T+I  AD ALY A
Sbjct: 541 VNDVAKTAQRMLSALE--QPFHLENHELYITPSIGIAIYDLDGHDGETLIKHADMALYQA 598

Query: 248 KKSGRNRVVCF 258
           K+ GRN    F
Sbjct: 599 KQLGRNTYQFF 609


>gi|71281954|ref|YP_271587.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71147694|gb|AAZ28167.1| sensory box sensor/GGDEF/EAL domain protein [Colwellia
           psychrerythraea 34H]
          Length = 921

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 11/183 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + E   +  ++  L+  D L+GL N   F   L         +  K ++ F D+D FK I
Sbjct: 465 INERKQAEYQLKHLALHDPLTGLPNRLLFQDRLEQAIALSDRHQHKFAVFFMDLDNFKII 524

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRK 201
           ND  GH  GD+++  +S +L         V RLGG+EFA      ++ ++A   A  L  
Sbjct: 525 NDTMGHDAGDELLKQVSLRLSCTGRKTDTVARLGGDEFAFIITKVNTIEDAVTFAQRLNS 584

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++  + I I +G +I++  S GI            ++  AD A+Y AK  GRN V  F+ 
Sbjct: 585 LL-KTPIEI-NGNNINMGSSIGITIYPDDAANSEELLRNADIAMYQAKDDGRNTVRFFTS 642

Query: 261 IEN 263
             N
Sbjct: 643 EMN 645


>gi|89092186|ref|ZP_01165140.1| diguanylate cyclase, putative [Oceanospirillum sp. MED92]
 gi|89083274|gb|EAR62492.1| diguanylate cyclase, putative [Oceanospirillum sp. MED92]
          Length = 529

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 10/170 (5%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNF 146
            +   R+   +R D L+GL N +A+   +         Y    S+V  D+D+FK+IND +
Sbjct: 361 HMEEERLR--ARTDPLTGLPNRAAYDEQIAQEYERWSRYRTSFSVVVADLDFFKKINDTY 418

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GDKV+  ++  +        FV R GGEEF      +  +EAA   + LR+ + +S
Sbjct: 419 GHLAGDKVLRLVAKVITKNIRVTDFVARYGGEEFVILLPSTVAEEAAQAMDKLRESLASS 478

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             N   G  + IT+S G+ E    + +  +  RAD+ALY AK+ GRN V 
Sbjct: 479 PFNFH-GKPVGITMSFGVTEIKEGDSLDDVFTRADEALYQAKEDGRNLVR 527


>gi|312197162|ref|YP_004017223.1| phytochrome sensor protein [Frankia sp. EuI1c]
 gi|311228498|gb|ADP81353.1| putative phytochrome sensor protein [Frankia sp. EuI1c]
          Length = 1637

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 93/206 (45%), Gaps = 16/206 (7%)

Query: 66   VENLSLVIISITISLLLGYISGSILK-------ELFISYNRISQLSRIDCLSGLLNHSAF 118
            +E ++L+   + + L    +  S+ +       +L  + +R+ QLS  D L+GL N    
Sbjct: 1417 LEGITLIARQLAVCLDNALVYASLERRVAERTEQLAAANHRLEQLSATDPLTGLANRRQL 1476

Query: 119  IS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                        SY   L++   DID+FK  ND FGH VGD  +  ++  L         
Sbjct: 1477 NEFLNDAWYRAASYGTPLALAMIDIDHFKAYNDFFGHTVGDLCLRRVAACLARCTRDTDL 1536

Query: 172  VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK- 230
              R GGEEF     G+    A  +A+ LR  +E+            +T+S GIA      
Sbjct: 1537 AARYGGEEFVVVMPGADSVTATQIAHRLRTAVEDLAEPHPRTDERIVTVSIGIATTTPGP 1596

Query: 231  -EPISTIIYRADQALYVAKKSGRNRV 255
             + ++ ++  AD ALY+AK  GRNRV
Sbjct: 1597 RDDVAALLEVADAALYLAKNGGRNRV 1622


>gi|330505281|ref|YP_004382150.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
 gi|328919567|gb|AEB60398.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
          Length = 1244

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 110/234 (47%), Gaps = 19/234 (8%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL------LGYISG--SILKELF 94
            F A ++        + G  +   +N  L    +TIS +      + +  G  + +  L 
Sbjct: 738 AFYAAMWHSLAANGHWQGEIWNRRKNGELYPEWLTISAVRNRDNQITHFVGVFADISSLK 797

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKL-SIVFFDIDYFKQINDNFG 147
            +  R+   +  D L+GL N   F + L         +++L +++F D+D FKQIND+ G
Sbjct: 798 HAQARLDHQAHHDPLTGLPNRLLFENRLRGALDGTRADDQLGAVLFLDLDRFKQINDSLG 857

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENS 206
           HPVGD+++  ++++L +       V RLGG+EF     G  + Q+A  +A  L +    S
Sbjct: 858 HPVGDQLLKAIAERLRLQLRDIDTVARLGGDEFIILLPGLHQPQDAEQIAQKLLECFGAS 917

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                      I+ S GI+      + ++T++  AD A+Y +K  GRNR   ++
Sbjct: 918 --FQLDNHEFFISASIGISLYPTDGQDVATLVKNADAAMYQSKAKGRNRCEFYT 969


>gi|218886632|ref|YP_002435953.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757586|gb|ACL08485.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 381

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 108/242 (44%), Gaps = 11/242 (4%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           P   M+ F +   I +   + +    + ++   PF   +Y     +  ++  +   +  G
Sbjct: 120 PPVVMLTFGLSIGILLMGALLLGVGAILFLPGDPFLYADYSQAFRIRYMLALLCCGIFAG 179

Query: 84  ---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVF 133
              Y      + L +   ++++ +R D L+GL N  A    L             LSI  
Sbjct: 180 LAEYTRRHTQRLLILLTQQLAESARTDELTGLANRRALCERLEYEQVRARRTGRPLSIAI 239

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK +ND +GH  GD V+  ++  L         + R GGEEF      + E  AA
Sbjct: 240 CDIDHFKSVNDCYGHQCGDLVLQSVAGLLHDNLRHQDTICRWGGEEFLLLLPETDEAGAA 299

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            LA  LR ++E  + +   G  + +T+S G+     +  I   I +ADQ LY+AK+ GRN
Sbjct: 300 RLAEKLRSLVEAMEYSYH-GIPVSVTLSFGVHTCGPEGDIDYHIRKADQKLYLAKEQGRN 358

Query: 254 RV 255
           RV
Sbjct: 359 RV 360


>gi|90420273|ref|ZP_01228181.1| GGDEF domain protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90335607|gb|EAS49357.1| GGDEF domain protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 382

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 59/228 (25%), Positives = 108/228 (47%), Gaps = 12/228 (5%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE---LFISYN 98
           +I +  I   +I L  F  L   L   L+L+   +   +   ++ GS+++    +     
Sbjct: 135 LIALGLIVSAHIALFVFLPLPDPLGFTLNLIPFVVPTYVAGVFVMGSMMQRETRMMRREQ 194

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
            +   +  D L+GL N  A+ + +     +       ++++  D D+FKQ+ND +GH  G
Sbjct: 195 SLEVDAFTDALTGLANRRAYDALIAEELAQRRGAEIGVTLLVVDFDHFKQVNDTYGHEAG 254

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+ +  +S  L        +V R GGEEF      +   +    A  +R  IE + + I+
Sbjct: 255 DEALKVVSRILRSCVREGDYVCRHGGEEFTVILPQTGLPQGRRTAERIRHAIEAAPL-IA 313

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              ++ +T+S G+A    H +  +T+   AD ALY AK +GR++VV +
Sbjct: 314 GDQNLSLTVSIGVAGAPQHGDDPNTLYRCADAALYEAKSAGRDQVVVY 361


>gi|330502907|ref|YP_004379776.1| sensory box protein [Pseudomonas mendocina NK-01]
 gi|328917193|gb|AEB58024.1| sensory box protein [Pseudomonas mendocina NK-01]
          Length = 1095

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 16/197 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
            ++   + EL  +  ++  L+  D L+ L N +  +  L         ++ + +++F D+
Sbjct: 640 LLTARDISELKQAQAQVQHLAYHDALTNLPNRALLMDRLTQQISLLKRHDLRGALLFLDL 699

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS------EQ 190
           D+FK IND+ GHPVGD V+  ++ +L         V RLGG+EF     G         +
Sbjct: 700 DHFKHINDSLGHPVGDSVLRLVTARLEASVRLEDTVARLGGDEFVVLLSGLEGKRSEVTR 759

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKK 249
               +A+ LR+++   +  +  G  + +T S G+A    H    + ++ RAD ALY AK 
Sbjct: 760 HVRQVADKLRQLLA--EPMLLDGHRLQVTPSIGVALIPDHGNTPADLLKRADIALYRAKD 817

Query: 250 SGRNRVVCFSDIENNTC 266
           SGRN +  F     +  
Sbjct: 818 SGRNAIQLFRTTMQDAA 834


>gi|304411474|ref|ZP_07393087.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           baltica OS183]
 gi|307306750|ref|ZP_07586492.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           baltica BA175]
 gi|304350001|gb|EFM14406.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           baltica OS183]
 gi|306910718|gb|EFN41147.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           baltica BA175]
          Length = 628

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 92/183 (50%), Gaps = 11/183 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL     ++++ S ID L+G+ N SAF   L             ++++  DID FK I
Sbjct: 441 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLIAESRISRRQETPIALLMLDIDRFKLI 500

Query: 143 NDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD+ +  ++  L          V R GGEEFA     ++E  A  +A  +R 
Sbjct: 501 NDRFGHLAGDEALRTIAQTLQQHLKRPTDLVSRYGGEEFAIILPNTAEDGALQVAETIRD 560

Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +       G  I +TIS G++     + +  + ++ +AD+ALY AK  GRN+V  FS
Sbjct: 561 AVSSLHFEW-GGEVIPLTISIGVSADIVTNDQHSTKLLEQADKALYQAKNGGRNQVSLFS 619

Query: 260 DIE 262
            ++
Sbjct: 620 SVQ 622


>gi|167031165|ref|YP_001666396.1| diguanylate cyclase [Pseudomonas putida GB-1]
 gi|166857653|gb|ABY96060.1| diguanylate cyclase [Pseudomonas putida GB-1]
          Length = 642

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 82/169 (48%), Gaps = 8/169 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNF 146
                   Q + +D L+GL N +A+   +             L++   D+D+FK+IND++
Sbjct: 472 REHLEEQRQKALLDPLTGLPNRAAWSERVEREMLDWQENGGHLAMAILDLDHFKRINDSY 531

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GDKV+  ++DQL        F+ R GGEEF      +    AA +A  LR  +E  
Sbjct: 532 GHLAGDKVLKIVADQLRKRLRGRDFIARFGGEEFVLLLPQTPPAAAAQVAELLRATVEAC 591

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +   G  + IT S G+      E    ++ RAD ALY AK+ GRNRV
Sbjct: 592 PFHFK-GERVVITTSIGLGAFRPGERSDQVLKRADAALYRAKEHGRNRV 639


>gi|308050982|ref|YP_003914548.1| diguanylate cyclase with PAS/PAC sensor [Ferrimonas balearica DSM
           9799]
 gi|307633172|gb|ADN77474.1| diguanylate cyclase with PAS/PAC sensor [Ferrimonas balearica DSM
           9799]
          Length = 314

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 62/217 (28%), Positives = 107/217 (49%), Gaps = 18/217 (8%)

Query: 57  PFYGLEYILVENLSLVIIS-----ITISLLLGY---ISGSILKELFISYNRISQLSRIDC 108
           P  G   ++ +N+++  +      ++ + L+ Y   +  +  ++L  +  ++ +LS+ID 
Sbjct: 99  PITGGNQMMCQNMTVQPLQDLRGEVSHAALILYDVSVQAADRRQLTDANEKLERLSQIDP 158

Query: 109 LSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GL N   +  +L         Y     ++  D+D+FKQ+ND  GH VGD+V+  L + 
Sbjct: 159 LTGLANRRQWEQALEQEFQRCRRYQPPSCLLVVDVDHFKQVNDQHGHAVGDQVLNELGNL 218

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L         V R GGEEF      +  ++  ILA  LR+ +E   + +    S++IT+S
Sbjct: 219 LARSLRKTDLVARYGGEEFVILLTETRPEQGRILAERLREAVEEMVMKVP--QSLNITVS 276

Query: 222 AGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
            G+    H           AD+ALY AK++GRNRV  
Sbjct: 277 LGLCPYQHSLASAQAWFEEADRALYQAKQNGRNRVEV 313


>gi|239827282|ref|YP_002949906.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. WCH70]
 gi|239807575|gb|ACS24640.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. WCH70]
          Length = 568

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 12/205 (5%)

Query: 64  ILVENLSLVIISITISLLLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           + +E L++ ++      +  Y++  S + E   +  ++++L+  D L+ + N       L
Sbjct: 100 LYLEWLTISVVKDQKGNMTNYVAMFSDITEHKRNVEQLTRLALYDTLTNVPNRYLLEKRL 159

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            S       +N+  +++F D+D FK IND  GH VGD ++   + +L  +      + R 
Sbjct: 160 ESIIRMSKKHNQSFALLFLDLDRFKNINDTLGHRVGDMLLKETAQRLKRMLRKQDTIARF 219

Query: 176 GGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF          +EAA +A  + + ++  +    +   I+I+ S GI+         
Sbjct: 220 GGDEFVIILPNLKHIREAAYMAEKIVESLK--RPFCFNHQEIYISTSIGISVYPYDGTDK 277

Query: 234 STIIYRADQALYVAKKSGRNRVVCF 258
            T+I  AD+A+Y AKK+GRN+   +
Sbjct: 278 ETLIRMADRAMYQAKKNGRNQYALY 302


>gi|95930131|ref|ZP_01312870.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95133825|gb|EAT15485.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 521

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 19/226 (8%)

Query: 49  FLFYIGLTPFYGL-EYILVENL-------SLVIISITISLLLGYISGSILKELFISYNRI 100
            +  + L PF  + EY L +         S V++++ I +LL        ++L+++  ++
Sbjct: 293 LMRTLRLPPFDRIPEYRLTDIWTQYKTQSSFVLVAMAIIVLLTCYLFVSRRKLYLAQQKL 352

Query: 101 SQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            ++S  D L+GL N   F+        +       L+++  DID+FK  ND++GH  GD 
Sbjct: 353 MRISERDPLTGLYNRRKFMNYYEKEWKAAQRSKTPLAVLMIDIDHFKDYNDHYGHLAGDV 412

Query: 154 VIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            +  ++  +   +        R GGEEF      + +  AA +A  +R  +E  Q+  + 
Sbjct: 413 ALTAVAGAIETRITRPRDCTARYGGEEFIGLLPETDDLAAAQVAEKIRIQVEKLQVQHAY 472

Query: 213 GPSI-HITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
             +  HIT+S GI      + I+   +I  AD+ALY AK++GRN V
Sbjct: 473 SATADHITVSIGITSLQEGDKINRMELINLADKALYEAKEAGRNCV 518


>gi|256032862|pdb|3I5C|A Chain A, Crystal Structure Of A Fusion Protein Containing The
           Leucine Zipper Of Gcn4 And The Ggdef Domain Of Wspr From
           Pseudomonas Aeruginosa
 gi|256032863|pdb|3I5C|B Chain B, Crystal Structure Of A Fusion Protein Containing The
           Leucine Zipper Of Gcn4 And The Ggdef Domain Of Wspr From
           Pseudomonas Aeruginosa
          Length = 206

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 86/175 (49%), Gaps = 12/175 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
           L     R+ +L   D L+GL N   F   L            +LS++  D+DYFK  ND 
Sbjct: 19  LENEVARLKKLVNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDT 78

Query: 146 FGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           FGH  GD+ +  ++  +      +     R GGEEFA    G+S   A +LA  +R+ +E
Sbjct: 79  FGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVE 138

Query: 205 NSQINISS-GPSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRV 255
           + QI+     P  H+T+S G++        +    +I  ADQALY AK +GRN+V
Sbjct: 139 SLQISHDQPRPGSHLTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGRNQV 193


>gi|171318694|ref|ZP_02907837.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
 gi|171096100|gb|EDT41026.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
          Length = 469

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 61/228 (26%), Positives = 95/228 (41%), Gaps = 9/228 (3%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           ++A  IF    FL   G+   +          S   +   ++  +   + S L+EL  + 
Sbjct: 242 WLAHAIFAGGFFLLSYGVVQAFLTTRSFETIYSQEELMARLAEAMAR-TESALQELQRTN 300

Query: 98  NRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
             +  L+  D L+G  N   FI                 S++  D+D FK IND +GH V
Sbjct: 301 QTLEHLAATDPLTGASNRRKFIECVEAEIARAKRDGAPFSLLALDLDNFKWINDCYGHQV 360

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+       +        V R+GGEEF      +    A  +   +R  I  +    
Sbjct: 361 GDRVLQGFVQTCLDAIRPYDDVARVGGEEFMVLLPRADPDAALAVGERIRSAIAGTPFAR 420

Query: 211 SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             G S+ IT+S GI++       I  ++  ADQ LY AK+ GRN V+ 
Sbjct: 421 EIGRSVSITVSIGISQFGKDGHTIDALLRAADQRLYRAKRRGRNCVIA 468


>gi|237654503|ref|YP_002890817.1| response regulator receiver modulated diguanylate cyclase [Thauera
           sp. MZ1T]
 gi|237625750|gb|ACR02440.1| response regulator receiver modulated diguanylate cyclase [Thauera
           sp. MZ1T]
          Length = 634

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 90/174 (51%), Gaps = 9/174 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL IS  R++  +  D L+ L N  + +++L         + + LS++  DID+FK+IND
Sbjct: 452 ELAISNRRLAHAAMTDLLTNLPNRRSGMNALAKAWAASSRFEQPLSVMMLDIDHFKRIND 511

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH VGD V+  ++  +         + R+GGEEF      +  + A   A  LR+++E
Sbjct: 512 SHGHAVGDTVLRDVAQAIQQSARKDDSMCRMGGEEFLVICPNTDLKAAVQAAERLRRMVE 571

Query: 205 NSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
             +I  +    I  ++S G+A R         ++  AD+ALY AK++GRNR   
Sbjct: 572 RLRIQ-AGETEIQTSVSIGVATREVGMTETDALVNAADRALYRAKQAGRNRSCV 624


>gi|15606018|ref|NP_213395.1| hypothetical protein aq_563 [Aquifex aeolicus VF5]
 gi|2983209|gb|AAC06808.1| hypothetical protein aq_563 [Aquifex aeolicus VF5]
          Length = 618

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 63/199 (31%), Positives = 91/199 (45%), Gaps = 14/199 (7%)

Query: 78  ISLLLGYISGSILK-----ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SY 125
           + LL+ YI G + +     E      ++   S ID L+G  N                  
Sbjct: 414 VKLLIPYIKGYLREATPVIESKKLMEKLKMQSYIDGLTGAFNRRFLEEIADKIVAQTLRR 473

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           N  L I+  D+D+FKQ+ND +GH  GD+V+  ++  +        ++ R GGEEF     
Sbjct: 474 NSNLGILMIDVDFFKQVNDTYGHDAGDEVLRQIARVIKDNIRKADYLIRYGGEEFLVLLT 533

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQA 243
              E  A  +A  LRKIIE + I + +  +I  T+S GI+E            +  AD A
Sbjct: 534 DVKEGYAEKVAEKLRKIIEETPITLPNCQTIRKTVSIGISEFPKDCEGKFWKCVKFADVA 593

Query: 244 LYVAKKSGRNRVVCFSDIE 262
           LY AK+ GRNRVV F    
Sbjct: 594 LYKAKEEGRNRVVRFKPEM 612


>gi|117920670|ref|YP_869862.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117613002|gb|ABK48456.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 342

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 100/206 (48%), Gaps = 11/206 (5%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-- 118
           ++ ++ E  SL++ + T+   L  + G  ++ L      +S  +  D L+ L N  A+  
Sbjct: 137 VDGVIDEMQSLLVNNQTMEQSLSAM-GQEVQNLKTEMENLSLAAMTDQLTSLHNRRAYEI 195

Query: 119 -----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                I      + + S++  DID FK  NDN+GH VGDKV+A+++  L        FV 
Sbjct: 196 AIQDHIHRAEQQHTRCSLLLIDIDRFKVFNDNYGHQVGDKVLAYVALALKQCVRGDDFVA 255

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH---ITISAGIAERCHK 230
           R GGEEF      +   +A  +A  LR+ I   ++ I     +    IT+S G+A     
Sbjct: 256 RYGGEEFVVLLPNTHFHDALQVAETLRERISERRLAIGKDKKLSLGAITVSIGLASLQEG 315

Query: 231 EPISTIIYRADQALYVAKKSGRNRVV 256
           +   T+  RAD+ALY AK  GRN V 
Sbjct: 316 DDADTLFSRADKALYEAKSDGRNCVR 341


>gi|313498951|gb|ADR60317.1| Diguanylate cyclase [Pseudomonas putida BIRD-1]
          Length = 503

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 10/177 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L  S  ++  L+  D L+GL N   F  +L             L+++  DID+FK+ N
Sbjct: 322 QQLLESNQQLESLAMHDALTGLANRRCFDEALTQEIRMAHRNGTPLALLMIDIDHFKRYN 381

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GHP GD  +  ++  L      P   + R GGEE A     +    AA++A  + + 
Sbjct: 382 DTYGHPAGDACLQQMAYLLSSCIRRPRDLLARYGGEEMAVILPDTDIDGAAVVARLMHER 441

Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
           +    +     P  H+T S GIA       +   ++I RAD+ALY+AK++GRNR+  
Sbjct: 442 LTLQPVPHEGSPFGHVTASIGIACSDGTTLDSPPSLIERADRALYIAKQAGRNRLQV 498


>gi|288924112|ref|ZP_06418162.1| diguanylate cyclase [Frankia sp. EUN1f]
 gi|288344545|gb|EFC79024.1| diguanylate cyclase [Frankia sp. EUN1f]
          Length = 484

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 89/208 (42%), Gaps = 16/208 (7%)

Query: 66  VENLSLVIISITISLLLGYISGSILK-------ELFISYNRISQLSRIDCLSGLLNHSAF 118
           +E + L+   + +SL    + GS+ +       EL I+  R+ QLS  D L+GL N    
Sbjct: 259 LEGIMLIAGQLAVSLDNARVYGSLERRVAERTEELAIANRRLEQLSVTDPLTGLANRRHL 318

Query: 119 -------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                            L++   DID+FK  ND+FGH  GD+ +  ++  L         
Sbjct: 319 GEILDLEWHRAQRQTTPLALAMIDIDHFKSYNDHFGHAAGDQCLQRVAACLAASTRDTDL 378

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCH 229
             R GGEEFA    G+    A+ +A+ LR  +              +T+S G+       
Sbjct: 379 TARYGGEEFAVVMPGADTGVASRIAHRLRSAVAELTEPHPLTTKRIVTVSIGVVSIVPTS 438

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVC 257
            E    ++  AD ALY AK  GRN+V  
Sbjct: 439 TEETEALVELADSALYRAKSGGRNQVEV 466


>gi|146340506|ref|YP_001205554.1| hypothetical protein BRADO3548 [Bradyrhizobium sp. ORS278]
 gi|146193312|emb|CAL77328.1| conserved hypothetical protein; putative Diguanylate-cyclase (DGC)
           or GGDEF domain [Bradyrhizobium sp. ORS278]
          Length = 355

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 62/183 (33%), Positives = 91/183 (49%), Gaps = 9/183 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L  S   I   S  D L+GL N   F   + +        N+ LS++ FDID+FK  ND+
Sbjct: 167 LQHSLEAIRAESLTDPLTGLGNRKYFDRMIETAVLTGLATNQPLSLLMFDIDHFKSFNDS 226

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD+V+  +   L           R GGEEFA     ++ ++A  +A+ +R+ +  
Sbjct: 227 YGHLTGDQVLRLVGLTLKHAVKGQDIAARYGGEEFAVVLPNTALRQALAVADQIRRAVTA 286

Query: 206 SQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            ++   S   I   +TIS G++     +    +I RAD  LY AK +GRNRVVC SD E 
Sbjct: 287 KELKKKSTGEILGRVTISVGVSMLRPGDDTDALIERADACLYAAKHNGRNRVVCESDPEY 346

Query: 264 NTC 266
            T 
Sbjct: 347 ATA 349


>gi|304312890|ref|YP_003812488.1| hypothetical protein HDN1F_32720 [gamma proteobacterium HdN1]
 gi|301798623|emb|CBL46855.1| Hypothetical protein HDN1F_32720 [gamma proteobacterium HdN1]
          Length = 319

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 87/176 (49%), Gaps = 9/176 (5%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNF 146
             +  ++  +SRID L+ L N S + S L         Y   LS++ FD+D+FK +ND +
Sbjct: 143 QAAIKKLEMVSRIDGLTQLFNRSHWQSRLNEEFSRSARYQTPLSLIMFDLDFFKNVNDTY 202

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD V+  +S  +          GR GGEEF      + E  A I+A  +R  IE +
Sbjct: 203 GHLGGDAVLCAVSAVIKNSVRENDIAGRYGGEEFGILLPNTPESGAMIVAERIRASIEAT 262

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            I       I  T S G+ E          +I RAD ALY AK++GRNRV+ F++ 
Sbjct: 263 TIPFED-YEIRATASLGVTEYKATVPDCENLIARADAALYKAKEAGRNRVILFTEE 317


>gi|192292883|ref|YP_001993488.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
 gi|192286632|gb|ACF03013.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
          Length = 345

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 9/182 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDI 136
            +  S + ++  +   + +L+  D ++G+ N   F+       S    Y   +S +  DI
Sbjct: 141 MLIYSDVTDIVRNAEELERLATTDGMTGVYNRRHFLTLADREWSRARRYERPMSFLMIDI 200

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK IND FGH VGD++I  L+            + RLGGEEFA     +   +A ++A
Sbjct: 201 DYFKAINDGFGHQVGDEMIVHLARLARDCKRDCDVLARLGGEEFALLLPETDLAQAEVVA 260

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             LR+ +  + + + +  +I  T+S G+A      + +S ++  ADQALY AK +GRNRV
Sbjct: 261 ERLRREVAGNAL-VVASHAIPATVSIGVATALPSMKDVSDLMKAADQALYDAKHAGRNRV 319

Query: 256 VC 257
           +C
Sbjct: 320 IC 321


>gi|269962456|ref|ZP_06176805.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832752|gb|EEZ86862.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 329

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 62/181 (34%), Positives = 98/181 (54%), Gaps = 9/181 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           S   + +  +   R+ +LS  D L+G+LN  AF++SL          ++ L+ V  DID+
Sbjct: 129 SVRDVTKTHLLERRLKELSETDELTGVLNRRAFLASLDRSLSSHSHPSQPLTCVMIDIDH 188

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND  GH  GD+VI  ++           F+GRLGGEEFA     +S  +A  +A  
Sbjct: 189 FKEINDQVGHFSGDQVINHVAKICQRAIRGTDFIGRLGGEEFAVILANTSAIQAYEVAER 248

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           +R+ I+N+   +  G  I  T+S G+AE   +      ++  AD+A+Y +K SGRN+V  
Sbjct: 249 IRQAIQNAPCKV-DGIEISTTVSIGVAEYDGQVLSAKELMVNADKAMYYSKHSGRNQVTL 307

Query: 258 F 258
           +
Sbjct: 308 Y 308


>gi|320161687|ref|YP_004174912.1| hypothetical protein ANT_22860 [Anaerolinea thermophila UNI-1]
 gi|319995541|dbj|BAJ64312.1| hypothetical membrane protein [Anaerolinea thermophila UNI-1]
          Length = 362

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 115/228 (50%), Gaps = 11/228 (4%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
           +++ F++ +  V     IF F+ G+     +EYI +E  + +  +  +  +L       +
Sbjct: 138 WALLFNLLVLAVTVGVGIFRFW-GIAEPLLVEYIRLE--ARIATTSFLLFILARTKDEFI 194

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L  ++  + Q++  D L+ L N      +L       ++ +++  DID+FKQIND FG
Sbjct: 195 RTLTTAHA-MHQMAYTDPLTFLPNRRWLTQTLEQRLSRKKRFTLILVDIDHFKQINDTFG 253

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  +SD L         +GR GGEEF   A     Q A  LA  LRK +EN +
Sbjct: 254 HDTGDAVLREVSDCLHHQIRAGDVIGRWGGEEFLILASEEEAQSALQLAQRLRKALENFK 313

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + +    ++ +T S G+      + I +++ RAD ALY AK +GRN V
Sbjct: 314 LEV----NLSVTASFGVTLSQEDDTIFSLLKRADLALYRAKSNGRNCV 357


>gi|257093702|ref|YP_003167343.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Candidatus Accumulibacter phosphatis clade IIA str.
            UW-1]
 gi|257046226|gb|ACV35414.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Candidatus Accumulibacter phosphatis clade IIA str.
            UW-1]
          Length = 1542

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 10/180 (5%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            S + ++  S  RI  L+  D L+GL N + F   L           E + +VF D+D FK
Sbjct: 1093 SDITKVRESQQRIEYLATHDELTGLPNRALFNDRLNLALAHAERSRESVGVVFIDLDNFK 1152

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
             +ND  GH  GDK++   + +L+        V RLGG+EF    + +  Q+A + A  L 
Sbjct: 1153 VVNDTLGHETGDKLLKQAAMRLLECVRAEDTVARLGGDEFVVLLVNADRQQATLTAERLL 1212

Query: 201  KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
              +  S           I+ S G++         ++++  AD A+Y AK  G+N    FS
Sbjct: 1213 TGLSTS--YHFGEHECFISASIGLSMFPEDASDANSLMRNADSAMYRAKDHGKNGFRFFS 1270


>gi|152991219|ref|YP_001356941.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
 gi|151423080|dbj|BAF70584.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
          Length = 350

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 19/194 (9%)

Query: 82  LGYISGSILKELFISYNRISQL----------SRIDCLSGLLNHSAFISSLGS------- 124
           L   +  + ++L   Y  I+ L          +  D L+ L N   F             
Sbjct: 157 LRMENSQLNEQLKKYYEEINHLRRELRDTKNKAEFDYLTELFNRRKFEEYFHKLLKEFNE 216

Query: 125 -YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
              +  S++  DID FKQIND +GH +GD+V+  LS  +     +     R+GGEEFA  
Sbjct: 217 GEGKPFSLIILDIDDFKQINDTYGHLLGDEVLKNLSSLIKTFLHSAHIPARIGGEEFAIL 276

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              +   EA  +A  LRK +EN  I I+ G  ++ T+S G+A+    + + +++ RAD+A
Sbjct: 277 LPETPLDEAKTIAERLRKTVENRTIPIAEG-DLNFTVSIGVAQVQKGDTMDSLLKRADEA 335

Query: 244 LYVAKKSGRNRVVC 257
           LY AK++G+N V+ 
Sbjct: 336 LYEAKRNGKNMVIA 349


>gi|109900134|ref|YP_663389.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109702415|gb|ABG42335.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
          Length = 316

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 21/244 (8%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLT-PFYGLEYILVENLSLVIISIT------ISLLLG 83
           FS+   +F   VI+    FLF  G   P       + +N+++  ++        + +++ 
Sbjct: 76  FSMKSPVF---VIWEQRPFLFRFGANRPITSPSKFMYQNITIFPLASLSGQVEQVCIVVY 132

Query: 84  YISGSILKELF--ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFF 134
            ++   + +       + + +LSRID L+G+ N   +        ++        S++  
Sbjct: 133 DVTDQAVSKQAVDELNSELQRLSRIDGLTGIFNRRYWEEQFSREFKRNLRKPSQSSVIML 192

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID FK+INDN+GHP GD+VI  L+  +  V       GR GGEEF      ++ Q   +
Sbjct: 193 DIDNFKKINDNYGHPAGDEVIRQLAKLIEDVTRETDICGRYGGEEFTILLPDTASQNVMV 252

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           LA  +R+ +EN +I      +I  T+S GIA+     E     +  AD+ALY AK SGRN
Sbjct: 253 LAQRIRETVENLKIEYEQ-QTISFTVSLGIAQFSPVFEQHIQWLESADKALYQAKISGRN 311

Query: 254 RVVC 257
           RVV 
Sbjct: 312 RVVI 315


>gi|209523202|ref|ZP_03271758.1| response regulator receiver modulated diguanylate cyclase
           [Arthrospira maxima CS-328]
 gi|209496353|gb|EDZ96652.1| response regulator receiver modulated diguanylate cyclase
           [Arthrospira maxima CS-328]
          Length = 652

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 11/194 (5%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL----- 129
           SI   + +    G +  +L      + +L+ +D L+G+ N   F   L    ++L     
Sbjct: 454 SIATPIAVAIQQGELHAKLQTVNQELERLASLDGLTGVANRRQFDLHLKREWQRLLRETA 513

Query: 130 --SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALG 186
             S++  D+D+FK  ND +GH +GD+ +  ++  L      +     R GGEEF      
Sbjct: 514 PISVIMCDVDFFKAYNDTYGHQMGDECLKQIAKILENCAQRSTDLASRYGGEEFVIVLPN 573

Query: 187 SSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIA--ERCHKEPISTIIYRADQA 243
           +  + A  +A+ ++  I   +I       S ++T+S G+A     H     ++I  AD A
Sbjct: 574 TGIKGALQVADKIQHQIRALEIEHQKSEVSGYVTLSLGVACQVPNHDRSPESLIKLADAA 633

Query: 244 LYVAKKSGRNRVVC 257
           LY AK  GRN ++ 
Sbjct: 634 LYEAKSKGRNCIIA 647


>gi|262089630|gb|ACY24727.1| PAS-PAS-GGDEF-EAL domain protein [uncultured organism]
          Length = 838

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 12/189 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
           G  + +   S   I  L+  D L+ L N   F       I S   Y+ KL++ F D+D F
Sbjct: 382 GRDITDRKRSEQHIHFLATHDSLTSLPNRFMFSQILNLAIESAHRYHRKLAVFFIDLDRF 441

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K IND  GH  GD ++  ++ +L         VGRLGG+EF        + ++ A +A  
Sbjct: 442 KNINDTLGHEAGDFLLCEMAARLKQCLRASDVVGRLGGDEFVILLPEPENTEQIATVAQK 501

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +      + I+I +G    +T S GI       +   T++  AD A+Y AK+ G+N    
Sbjct: 502 ILSA-SINPIDI-NGQECRVTASIGICVYPEDGKDEQTLMKNADIAMYRAKEEGKNNYQF 559

Query: 258 FS-DIENNT 265
           +S DIE  +
Sbjct: 560 YSPDIEARS 568


>gi|94265540|ref|ZP_01289287.1| PAS:GGDEF:EAL:GAF [delta proteobacterium MLMS-1]
 gi|93453940|gb|EAT04290.1| PAS:GGDEF:EAL:GAF [delta proteobacterium MLMS-1]
          Length = 940

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 16/190 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           + + +       I +L+  D L+ L N   F   L           +  +++F D+D FK
Sbjct: 484 TDITDKKNREQEIHRLAFYDPLTRLPNRRLFFDRLEQAISASARSGQHGAVLFLDLDNFK 543

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ------EAAI 194
            +ND  GH +GD ++   + ++         V R GG+EF       S        +A  
Sbjct: 544 TLNDTRGHDIGDLLLTMAAKRIQETVREDDTVSRQGGDEFMVLLNNLSPDRHAAISQAGR 603

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRN 253
           +A  +R  ++  Q     G   HI +S GI     H   +  ++ RAD A+Y AK +GRN
Sbjct: 604 VAEKIRAALD--QPFDLDGYEHHIGVSIGIGLFMGHDTSVDELLKRADAAMYQAKNAGRN 661

Query: 254 RVVCFSDIEN 263
           +V  F     
Sbjct: 662 QVRFFDPEMQ 671


>gi|117927375|ref|YP_871926.1| diguanylate cyclase with GAF sensor [Acidothermus cellulolyticus
           11B]
 gi|117647838|gb|ABK51940.1| diguanylate cyclase with GAF sensor [Acidothermus cellulolyticus
           11B]
          Length = 710

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 9/180 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
             S+  E  + +    +LS  D L+GL N+          I     +   L+++  D+D 
Sbjct: 491 QASVAIENVLLHQEAERLSLTDALTGLWNYRYLTMTLGHEIERATRFRRPLALLMIDLDR 550

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND  GH  GD V+  L+ +L         V R GGEEF      +    AA  A  
Sbjct: 551 FKDINDRHGHQAGDAVLVELARRLHTTVREVDTVARYGGEEFVVILPETDADGAAHTAER 610

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           LR+ +  +  ++     I +T S GIA    H    + ++  AD+ALYVAK SGR+    
Sbjct: 611 LRQAVRGTPFHVEQ-MDIPVTASIGIAVFPRHGSSAAILLRAADEALYVAKHSGRDAWRF 669


>gi|51894243|ref|YP_076934.1| hypothetical protein STH3108 [Symbiobacterium thermophilum IAM
           14863]
 gi|51857932|dbj|BAD42090.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 425

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 9/177 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
             +       + +  L+  D L+G  N  +F+                 S++  DID+FK
Sbjct: 225 RDISARKRLESDLKHLATTDGLTGAYNRRSFVEVCGQELQRADRRARPTSLLLMDIDHFK 284

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND FGH  GD+V+  + +    V  +   VGR+GG+EFA     ++ ++A  +A  LR
Sbjct: 285 RLNDRFGHAAGDEVLRQIVETGRRVLRSEDVVGRIGGDEFAVLLPATTLEQAGRVAEQLR 344

Query: 201 KIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVV 256
              E   +    G +   T+S G+AE   H   +  ++ RAD+ALY AK +GRN V 
Sbjct: 345 TTYERLAVPARGG-TATFTVSFGVAEWKPHLRTVEELLQRADRALYAAKNAGRNCVR 400


>gi|86357267|ref|YP_469159.1| response regulator PleD [Rhizobium etli CFN 42]
 gi|86281369|gb|ABC90432.1| two-component response regulator protein [Rhizobium etli CFN 42]
          Length = 457

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 87/175 (49%), Gaps = 9/175 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
            L  S  +  +L+  D L+GL N     + L        +    LS++  DID FKQ+ND
Sbjct: 280 RLRASVKQTIELAVTDPLTGLYNRRYLDNHLNVLFNRSMARGRPLSVLITDIDRFKQVND 339

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+   ++++           R GGEEF      +S + AA +A  LR  +E
Sbjct: 340 TYGHDGGDEVLREFANRVRSTIRGADLACRYGGEEFVVVMPDTSPEVAAAVAERLRAAVE 399

Query: 205 NSQINIS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++   +  S  ++ +T S GIA R         ++ +AD ALY AK +GRNRVV 
Sbjct: 400 SAPFMLKRSSEALSVTASFGIASRIGAVLTPDQLMKQADLALYEAKNTGRNRVVA 454


>gi|327398500|ref|YP_004339369.1| response regulator receiver modulated diguanylate cyclase [Hippea
           maritima DSM 10411]
 gi|327181129|gb|AEA33310.1| response regulator receiver modulated diguanylate cyclase [Hippea
           maritima DSM 10411]
          Length = 429

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 8/165 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ + + +D L+ L N       L  +        E LS +  DID FK +ND +GH  
Sbjct: 255 EQLKEEAELDFLTKLYNRRLMFRFLQHHAQLSKRNGEALSFLMIDIDKFKTVNDTYGHQS 314

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  +++ +           R GGEEF+   +  S Q+A  +A  +R   E + I+I
Sbjct: 315 GDEVLKEMANIIKENIRKSDIACRFGGEEFSVLLINISPQDACSVAEKIRNATEKTAISI 374

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +G  IHITIS G++    K+ I++ I +AD ALY AK++GRNR+
Sbjct: 375 -NGQDIHITISIGVSSLTDKDDINSFIKKADDALYKAKEAGRNRI 418


>gi|258404195|ref|YP_003196937.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
 gi|257796422|gb|ACV67359.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
          Length = 550

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 60/185 (32%), Positives = 91/185 (49%), Gaps = 12/185 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQ 141
            +         + +LSR D L+GL N   FI       S     +E+L++   DID+FK 
Sbjct: 363 DITHQQQYQEHLKRLSRTDELTGLFNRRHFITLMHKEFSRARRTHERLTLAMLDIDHFKD 422

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH VGD V+  L   L           R GGEEFA     +   +A  +   LR 
Sbjct: 423 VNDKYGHDVGDHVLQHLGRILREDVRPYDIAARYGGEEFAICFPDTDLSQADHICERLRT 482

Query: 202 IIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV---VC 257
           +   S+++  +G +I  T+S G++E R   E +  ++  AD ALY AK +GRNR+   V 
Sbjct: 483 LCAASEVS-RNGGTIGFTVSFGLSELRPEHEDLDGLLKSADNALYAAKANGRNRIEHDVV 541

Query: 258 FSDIE 262
           + D +
Sbjct: 542 YCDQQ 546


>gi|83746060|ref|ZP_00943115.1| Sensor protein [Ralstonia solanacearum UW551]
 gi|207742445|ref|YP_002258837.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
 gi|83727243|gb|EAP74366.1| Sensor protein [Ralstonia solanacearum UW551]
 gi|206593835|emb|CAQ60762.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
          Length = 903

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 11/182 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNF 146
             +  ++  L++ D L+GL N + F+  + +          +++++F D+D FK++ND  
Sbjct: 463 RAAEQQLKFLAQRDALTGLYNRAYFLQRMQAVLDGAATDGRQVAVLFLDLDGFKKVNDTA 522

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIEN 205
           GH  GD ++  ++ +L         + RLGG+EF        S  EA  LA  +   I  
Sbjct: 523 GHEAGDHLLRIVAQRLSACVRQADTLARLGGDEFVVLLDHVRSLDEAERLARRIIAAIA- 581

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            Q   + G   ++  S GIA    H    +T++  AD A+Y AK++GRN+   F++  + 
Sbjct: 582 -QPFSTGGTEYYLGASIGIAVHPEHGRDAATLLRCADAAMYNAKQNGRNQHRVFTERLSQ 640

Query: 265 TC 266
             
Sbjct: 641 RA 642


>gi|311696654|gb|ADP99527.1| response regulator receiver domain protein (CheY) [marine bacterium
           HP15]
          Length = 598

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 120/287 (41%), Gaps = 49/287 (17%)

Query: 23  SPHTFMIYFSIF--------FSIFIATVIFIANIFLFY--IGLTPFYGLEYILVE---NL 69
           +P  ++I F ++        F +   T + I ++ L    +G+ P   L   + +    L
Sbjct: 303 TPAAWVIGFLVWRKGQVLGGFYMLAWTPLLIGHLILAVSKLGIMPRSFLTEFMPQIGVAL 362

Query: 70  SLVIISITIS-------------------------LLLGYISGSILKELFISYNRISQLS 104
            +V++S  ++                         L L         EL  +  ++  +S
Sbjct: 363 EVVLLSFALAYRINLERRKRHEAQEQALSIQQQANLTLEMRVQERTDELERANEQLRAIS 422

Query: 105 RIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
             D L+ + N   F   L         +   LS++  DID+FK++ND  GH VGD  +  
Sbjct: 423 LTDGLTHVANRRRFDEKLQDEWKRAQRHGHPLSLLLLDIDHFKRVNDELGHLVGDDCLTE 482

Query: 158 LSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PS 215
           ++      V  +   + R GGEEF      + E+ A  +A  +R+ +  S +  S     
Sbjct: 483 VAALCAAEVQRSGDLLARYGGEEFIILLPATPEEGAVRVAERVRQAVARSPVYSSERVAP 542

Query: 216 IHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + +TIS G+A            +I +AD+ALY AK+SGRNRV+   D
Sbjct: 543 VSLTISVGVACVVPDPDMEPQELIRQADEALYSAKESGRNRVMVARD 589


>gi|311105212|ref|YP_003978065.1| diguanylate cyclase [Achromobacter xylosoxidans A8]
 gi|310759901|gb|ADP15350.1| diguanylate cyclase, GGDEF domain protein 6 [Achromobacter
           xylosoxidans A8]
          Length = 484

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 103/207 (49%), Gaps = 15/207 (7%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFIS 120
            +  +L II +T +LLL  ++  +L    ++  +     ++  +R D L+GL N  AF  
Sbjct: 275 WDRRALFIIPVTTALLLSVVALIVLFRREMALRKAVETQLAIQARTDGLTGLANRRAFDE 334

Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFV 172
           +L    +        LS++F D D+FK+ ND +GH  GD+++  L+  L           
Sbjct: 335 TLAREWQNARRERVPLSLLFLDADHFKRYNDRYGHQQGDQLLIALARVLKKKARRPRDLA 394

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHK 230
            R GGEEF      +S Q A  +A  +R+ +   ++      +  +TIS G+A       
Sbjct: 395 ARYGGEEFVVLLPNTSRQRAVEIAESIRRTVAGLKVPHEDAAAGIVTISVGVATSVPQAD 454

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVC 257
           + +++++  AD A+Y AK+SGRNRV  
Sbjct: 455 DTLASLVEAADAAVYRAKESGRNRVAV 481


>gi|114777850|ref|ZP_01452781.1| sensory box-containing diguanylate cyclase, putative [Mariprofundus
           ferrooxydans PV-1]
 gi|114551841|gb|EAU54381.1| sensory box-containing diguanylate cyclase, putative [Mariprofundus
           ferrooxydans PV-1]
          Length = 800

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 12/182 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           +++ E   S  R+ QL+  D L+GL N + F   L         + +  +++F D+D+FK
Sbjct: 618 AVVIERKQSEERLQQLAHNDMLTGLPNRTLFYDRLNQALALAQRHKQAFAVMFLDLDHFK 677

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDL 199
           +IND  GH +GD ++   + +L     +   V R+GG+EF      ++ +EA   +A  L
Sbjct: 678 EINDTLGHDMGDLLLREAATRLRSCVRSMDTVARMGGDEFTIILTETAVREAVEKVAEKL 737

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +  E  Q    +G   H+  S GIA    H     T+I  AD A+Y AK+  RN    F
Sbjct: 738 LR--ELQQPFSLNGEIRHVGCSIGIALYPKHGLDSETLIKHADIAMYDAKRE-RNSYCFF 794

Query: 259 SD 260
           SD
Sbjct: 795 SD 796


>gi|144899220|emb|CAM76084.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 480

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 94/179 (52%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            + + E       + +L+ +D L+G  N   F       +     Y+  LS++  D+D+F
Sbjct: 299 AADITERKSLERELRRLATMDSLTGAPNRRHFSTLAHQEMERANRYDLPLSVIMLDVDHF 358

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND++GH +GD+++  ++  +         +GR+GGEEFA     +    AA +A  L
Sbjct: 359 KKVNDSWGHAIGDEMLKAVTTAIQGELREVDVLGRMGGEEFALLLPQTGIDGAAQVAERL 418

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           R  +   ++ ++ G  +H TIS G+  R   E     ++ RAD+A+Y AK++GRNRV  
Sbjct: 419 RSAVAAIRLPLAEG-WLHATISLGVTTRLEGEAQFEHLLGRADRAMYEAKQAGRNRVAI 476


>gi|146293192|ref|YP_001183616.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
 gi|145564882|gb|ABP75817.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
          Length = 368

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 11/206 (5%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-- 118
           ++ ++ E  SL+I +  +   L  + G  ++ L      +S  +  D L+ L N  A+  
Sbjct: 163 VDGVMDEMQSLLINNQNMEQSLNAM-GQEVQHLKSEMENLSLAAMTDQLTSLYNRRAYEI 221

Query: 119 -----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                I      + + S++  DID FKQ ND +GH +GDKV+A+++  L        FV 
Sbjct: 222 AIQDHIHRAQEQHSRCSLLIVDIDRFKQFNDTYGHQIGDKVLAYVALALKQCVRGDDFVA 281

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH---ITISAGIAERCHK 230
           R GGEEF      +   +A  +A  LR+ I    + I     +    IT+S G+A     
Sbjct: 282 RYGGEEFVVLLPNTHFHDALQVAETLRERISERHLTIGKDKKLSLGAITVSIGLASLQEG 341

Query: 231 EPISTIIYRADQALYVAKKSGRNRVV 256
           +   T+  RAD+ALY AK  GRN V 
Sbjct: 342 DDAETLFSRADKALYEAKSDGRNCVR 367


>gi|56478925|ref|YP_160514.1| sensor histidine kinase [Aromatoleum aromaticum EbN1]
 gi|56314968|emb|CAI09613.1| Sensory protein with histidine kinase domain [Aromatoleum
           aromaticum EbN1]
          Length = 646

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 11/184 (5%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFD 135
             +    + E      RI+ L+  D L+G+ N   F   L         Y  +  ++F D
Sbjct: 465 AIVVLLDITERKDVERRIAHLATHDVLTGIPNRLMFSQQLTHAVDQAKRYGHRFGLLFVD 524

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAI 194
           +D+FK++ND FGH  GD+++     ++     +   +GR GG+EF        S  +A +
Sbjct: 525 LDHFKRVNDEFGHHAGDQLLREAVSRMQHAVRSSDMLGRRGGDEFVVLLPEIESGHDAEV 584

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           +A  +R  +E  Q  +  G    I+ S GIA    H      ++ RAD+A+Y AK  GRN
Sbjct: 585 VAEKIRLALE--QPFVLDGKEARISSSIGIALYPDHGADEGALMRRADEAMYRAKSEGRN 642

Query: 254 RVVC 257
           RV  
Sbjct: 643 RVAY 646


>gi|225872549|ref|YP_002754004.1| two component regulator propeller/GGDEF domain protein
            [Acidobacterium capsulatum ATCC 51196]
 gi|225794455|gb|ACO34545.1| two component regulator propeller/GGDEF domain protein
            [Acidobacterium capsulatum ATCC 51196]
          Length = 1028

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 12/186 (6%)

Query: 87   GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDY 138
              I +EL  S  ++ Q++  D L+GL N   F               N   +++ FD+D 
Sbjct: 839  QKITEELQESRRQLEQIAHTDPLTGLPNRRMFSEHFRRLLATSRRQQNRSFTLILFDLDK 898

Query: 139  FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
            FK IND +GH  GD+ +  +++++  +        R+GG+EFA       +      L  
Sbjct: 899  FKDINDTYGHDAGDEWLKIVAERIRSMVRQSDCFARVGGDEFALLVADPINGHGIRTLCE 958

Query: 198  DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
             L   +   +    +  ++  T S G+A      E    +   AD ALY AK++G N   
Sbjct: 959  ALAACVR--EPFFVNATAVKTTFSIGLASYPKDGEDEIALFKAADIALYRAKRAGGNCWH 1016

Query: 257  CFSDIE 262
            C+S  E
Sbjct: 1017 CYSPAE 1022


>gi|207728048|ref|YP_002256442.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
 gi|206591292|emb|CAQ56904.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
          Length = 903

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 11/182 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNF 146
             +  ++  L++ D L+GL N + F+  + +          +++++F D+D FK++ND  
Sbjct: 463 RAAEQQLKFLAQRDALTGLYNRAYFLQRMQAVLDGAATDGRQVAVLFLDLDGFKKVNDTA 522

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIEN 205
           GH  GD ++  ++ +L         + RLGG+EF        S  EA  LA  +   I  
Sbjct: 523 GHEAGDHLLRIVAQRLSACVRQADTLARLGGDEFVVLLDHVRSLDEAERLARRIIAAIA- 581

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            Q   + G   ++  S GIA    H    +T++  AD A+Y AK++GRN+   F++  + 
Sbjct: 582 -QPFSTGGTEYYLGASIGIAVHPEHGRDAATLLRCADAAMYNAKQNGRNQHRVFTERLSQ 640

Query: 265 TC 266
             
Sbjct: 641 RA 642


>gi|23014258|ref|ZP_00054084.1| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 445

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 63/197 (31%), Positives = 94/197 (47%), Gaps = 10/197 (5%)

Query: 70  SLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------ 122
           S+  +     LL  +++    + E       +++L+  D L+G+ N   F+         
Sbjct: 248 SIAPVRSPTGLLTHFVALKEDVTETKRLQEELTRLASQDSLTGIANRRHFLERAHTEIIR 307

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
            G     L+++  D+D+FK+IND +GH  GD  +  L+D            GRLGGEEF 
Sbjct: 308 AGRAKTPLAVLMLDVDHFKKINDEYGHAAGDAALKALADTCRSTLRETDLFGRLGGEEFG 367

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRA 240
               G     A   A  LR  I  ++I I  G +I IT S G++     E  I   + RA
Sbjct: 368 ILFPGDDLNAATEAAERLRLAIAATKITI-GGATIAITASLGLSLLQDGEKSIDAALSRA 426

Query: 241 DQALYVAKKSGRNRVVC 257
           DQALYVAK++GRNR+  
Sbjct: 427 DQALYVAKQAGRNRLEI 443


>gi|291613706|ref|YP_003523863.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1]
 gi|291583818|gb|ADE11476.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1]
          Length = 387

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 77/256 (30%), Positives = 119/256 (46%), Gaps = 11/256 (4%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV 72
           L   + L + + HT   +  +   I I  V+      +   G       E   V N   V
Sbjct: 134 LIASELLRNRATHTGRAWRLLLAGIAIVVVVLGLRSLVAMSGQFILAQPETGGVPNWVQV 193

Query: 73  I--ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125
           +  +++  S LLG I G +L     +   +  L+  D L+G+ N  A +           
Sbjct: 194 LSFVAVMASSLLGSI-GFLLMVKERTDREVLHLAMTDSLTGVPNRRALMDYAERAMAQRG 252

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              ++++  D D+FK+IND +GHPVGD+V+  L+  L         +GR GGEEF   A 
Sbjct: 253 GRSVALLMIDADHFKRINDTYGHPVGDEVLRQLTRLLQQRLRGGDLLGRYGGEEFCVVAP 312

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQA 243
            +  + A  LA  LR+ + ++ ++   G  + IT+S GIA         +  I+  AD A
Sbjct: 313 DADAEGALKLAESLRESVASAVLDTEQGK-LSITVSIGIAHSTADAGRALKDILAEADIA 371

Query: 244 LYVAKKSGRNRVVCFS 259
           LY AKK GRN+VV FS
Sbjct: 372 LYSAKKGGRNQVVSFS 387


>gi|220934578|ref|YP_002513477.1| diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995888|gb|ACL72490.1| diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 464

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 63/274 (22%), Positives = 121/274 (44%), Gaps = 22/274 (8%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIG----LTPFYG 60
           L     I +       S     +M+  ++F    +A ++      L+++G       F+ 
Sbjct: 191 LLSLAGILVMAVLRTRSPLMTVYMVSLAVFAQASLAFLLATPWNHLWWLGHGIFAAGFFM 250

Query: 61  LEYILVENL----SLVIISITISLLLGYI-----SGSILKELFISYNRISQLSRIDCLSG 111
           L Y +V+      S   +   + ++         +   L ++  +  ++ QL+  D L+G
Sbjct: 251 LSYGIVQAFHTTRSFSTVYSQMDMMAQLREQQAWTQEALLQVQEANRKLEQLASTDALTG 310

Query: 112 LLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           + N    +            +   LS++  D+D+FK+IND++GH  GD+V+  +++ +  
Sbjct: 311 VANRRQLVERADMEVPRSERHGAPLSLLCLDLDHFKRINDDYGHLAGDEVLKQVAEAIQQ 370

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                  + R+GGEEF      +    A  +A  +R  +E   I +  G  +H+T+S G 
Sbjct: 371 SLRPSDLLARVGGEEFHVLLPDTDLAGARDVAERIRVKLEGLDIPV-QGVVLHVTVSVGC 429

Query: 225 AER-CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           A+       + ++ + AD+ LY AK  GRNRVV 
Sbjct: 430 AQLGPDGADMKSLTHTADERLYQAKALGRNRVVI 463


>gi|152998962|ref|YP_001364643.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|151363580|gb|ABS06580.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           baltica OS185]
          Length = 628

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 11/183 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL     ++++ S ID L+G+ N SAF   L             ++++  DID FK I
Sbjct: 441 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLIAESRISRRQETPIALLMLDIDRFKLI 500

Query: 143 NDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD+ +  ++  L          V R GGEEFA     ++E  A  +A  +R 
Sbjct: 501 NDRFGHLAGDEALRTIAQTLQQHLKRPTDLVSRYGGEEFAIILPNTAEDGALQVAETIRD 560

Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +       G +I +TIS G++     + +  + ++ +AD+ALY AK  GRN+V  FS
Sbjct: 561 AVASINFEW-EGVAIPLTISIGVSADIVTNDQHSTKLLEQADKALYQAKNGGRNQVSLFS 619

Query: 260 DIE 262
            ++
Sbjct: 620 SVQ 622


>gi|251794742|ref|YP_003009473.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus sp. JDR-2]
 gi|247542368|gb|ACS99386.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus sp. JDR-2]
          Length = 324

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 84/175 (48%), Gaps = 12/175 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIN 143
           +EL     ++  L+  D L+GL N   F   L  Y E        LS+   DID FK IN
Sbjct: 152 QELLDLNEKLEALASTDPLTGLKNRRYFQEQLQKYTELSEQTEAALSLCIVDIDRFKSIN 211

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHPVGD V+  L+  L         V R GGEEF        +++A + A   R   
Sbjct: 212 DTYGHPVGDLVLTRLAQLLQEQSPDGAVVARFGGEEFVILLPELDQEQALVAAERYRAAT 271

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           E + +       + ITIS G A     E   +++ +ADQALY +K +GRNRV  +
Sbjct: 272 ETTPLG-----DLRITISIGTATFAAAETELSLLQQADQALYHSKNNGRNRVTHY 321


>gi|224826765|ref|ZP_03699865.1| diguanylate cyclase [Lutiella nitroferrum 2002]
 gi|224600985|gb|EEG07168.1| diguanylate cyclase [Lutiella nitroferrum 2002]
          Length = 515

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 7/171 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNF 146
           ++ +    NR  Q S  D L+GL N     S L  +    +  +++  DID+FK +ND++
Sbjct: 346 MRAMQQQLNRFRQESNTDALTGLGNRRELDSVLDDWKYSRQPFAVLMIDIDFFKSVNDSY 405

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+ +  L+  +         V R+GGEEF     G+    A  +A  L   +E  
Sbjct: 406 GHDTGDQALTALAQLMRDSAREGDVVCRMGGEEFVMLLPGADAIGAERVAERLCSRVEAY 465

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++         +T+S G+A     E    ++  AD ALY AK+ GRNRVV 
Sbjct: 466 RVPGLPA----LTVSIGVAAGIADETPEALLREADDALYQAKQQGRNRVVL 512


>gi|319426296|gb|ADV54370.1| diguanylate cyclase [Shewanella putrefaciens 200]
          Length = 368

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 11/206 (5%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-- 118
           ++ ++ E  SL+I +  +   L  + G  ++ L      +S  +  D L+ L N  A+  
Sbjct: 163 VDGVMDEMQSLLINNQNMEQSLNAM-GQEVQHLKSEMENLSLAAMTDQLTSLYNRRAYEI 221

Query: 119 -----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                I      + + S++  DID FKQ ND +GH +GDKV+A+++  L        FV 
Sbjct: 222 AIQDHIHRAQEQHSRCSLLIVDIDRFKQFNDTYGHQIGDKVLAYVALALKQCVRGDDFVA 281

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH---ITISAGIAERCHK 230
           R GGEEF      +   +A  +A  LR+ I    + I     +    IT+S G+A     
Sbjct: 282 RYGGEEFVVLLPNTHFHDALQVAETLRERISERHLTIGKDKKLSLGAITVSIGLASLQEG 341

Query: 231 EPISTIIYRADQALYVAKKSGRNRVV 256
           +   T+  RAD+ALY AK  GRN V 
Sbjct: 342 DDAETLFSRADKALYEAKSDGRNCVR 367


>gi|218437187|ref|YP_002375516.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7424]
 gi|218169915|gb|ACK68648.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7424]
          Length = 322

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 98/175 (56%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDN 145
           L ++Y  + +L+  D L+G+ N  A ++           Y+   S++  D+DYFK+IND+
Sbjct: 142 LKMAYAELEKLANTDPLTGVANRRALLNFGEQEFYRAQRYHCPFSLLIIDLDYFKKINDS 201

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH +GD  +  +++ +         +GR GGEEF     G+  ++A I+A  + ++I  
Sbjct: 202 YGHDIGDLALKTVTEAVNKAIRKIDLLGRFGGEEFVVILPGTKLKDACIVAQRICRLISE 261

Query: 206 SQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
             +++    ++++T S G+A    K+  I+ II+RADQ LY AK  GRN+VV + 
Sbjct: 262 VSLSVEQ-KTLNMTASIGVAAYNKKDKTINEIIHRADQGLYQAKNQGRNQVVVYD 315


>gi|221065249|ref|ZP_03541354.1| diguanylate cyclase [Comamonas testosteroni KF-1]
 gi|220710272|gb|EED65640.1| diguanylate cyclase [Comamonas testosteroni KF-1]
          Length = 373

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 72/270 (26%), Positives = 130/270 (48%), Gaps = 23/270 (8%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60
           +++ +  F ++ +     + ++S + +M   ++   +   T+         ++ + P   
Sbjct: 105 LSQVITLFFAVGMA-GSAISAYSAYRYMALTAVGLVLLPTTL---------WLLIQPSTE 154

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSA 117
              + + +L+     +  +  L     S+L+   EL I ++  S  +R D L+G+ N  A
Sbjct: 155 QRLLALTSLAFCAFVVRATRELSRALQSLLRLRRELEIQHSIASNAARTDDLTGVNNRRA 214

Query: 118 FISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           F             Y   L  + FDID+FKQIND  GH  GDKV+  +  Q+        
Sbjct: 215 FNEKAETMFAYTRRYGVPLCALLFDIDHFKQINDTHGHAAGDKVLQAVVRQIKSALREAD 274

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
             GRLGGEEF     G++ QEA  +A  +R  ++  +  ++   ++ +TIS G+AE    
Sbjct: 275 LCGRLGGEEFGVLLAGTNMQEAVQIAERIRLAVQAIKEPVND-TTLQVTISVGVAEADSA 333

Query: 231 -EPISTIIYRADQALYVAKKSGRNRVV-CF 258
              +ST++ +AD A+Y AK +GRN+V  C+
Sbjct: 334 CADVSTLLKQADAAMYRAKSNGRNQVHSCY 363


>gi|17228670|ref|NP_485218.1| hypothetical protein all1175 [Nostoc sp. PCC 7120]
 gi|17130522|dbj|BAB73132.1| all1175 [Nostoc sp. PCC 7120]
          Length = 880

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 13/192 (6%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKL 129
           T+  +   ISG+  ++      +I   +  D L+GL N   F   L           E L
Sbjct: 424 TLLTMAASISGAWQRQ--QVEEKIRYQALHDLLTGLPNRLLFNELLAKALANASRSQESL 481

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS- 188
           +++F D+D FK IND  GH +GD+++  ++ +L     +   V R GG+EF       S 
Sbjct: 482 AVMFLDLDRFKVINDTLGHTLGDRLLQSVAQRLRDCLRSGDTVSRWGGDEFTILLPHISY 541

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVA 247
            +E    A  + K +E  ++    G  ++++ S GIA   H       +I  AD ALY A
Sbjct: 542 IEEVTQAACRILKALE--EVFHLDGHELYVSASLGIALLDHHSPDAEALIKHADAALYHA 599

Query: 248 KKSGRNRVVCFS 259
           K  GRN    ++
Sbjct: 600 KDEGRNNYQFYT 611


>gi|289208876|ref|YP_003460942.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           K90mix]
 gi|288944507|gb|ADC72206.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           K90mix]
          Length = 791

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 59/179 (32%), Positives = 81/179 (45%), Gaps = 11/179 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQ 141
            +         +   +  D L+   N   F             Y    S++  DID+FK+
Sbjct: 617 DITRQKELEAALEHQAFYDPLTDAANRGYFETLLDQEARRAQRYAHPCSLLLLDIDHFKR 676

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH VGD+V+ FL   L         +GR GGEEF     G+  +    +A  LR+
Sbjct: 677 INDTFGHEVGDEVLRFLVHALKGRLREADVLGRWGGEEFVVLLPGTDAERGQHVAEQLRE 736

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +  +           +TIS G+AE    E I   + RAD+A+YVAKK GRNRVV   D
Sbjct: 737 QVTATAFPCVGL----VTISLGVAECRPGESIRDWVKRADEAMYVAKKGGRNRVVRLDD 791


>gi|307720558|ref|YP_003891698.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Sulfurimonas autotrophica DSM 16294]
 gi|306978651|gb|ADN08686.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Sulfurimonas autotrophica DSM 16294]
          Length = 423

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 86/179 (48%), Gaps = 11/179 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           +G  + E      ++ +L+  D L+G+ N           I     Y E  S++  DID 
Sbjct: 248 TGRDITERIALEKQLKKLATKDTLTGIYNRYKINTIIEDEIKRAKRYGEIFSLIMLDIDN 307

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++ND +GH  GD V+  +S  ++         GR GGEEF   A  +++ EA  LA  
Sbjct: 308 FKKVNDTYGHDTGDYVLQEISRVVLGTIRKTDSFGRWGGEEFILVAPHTNKDEALELAQK 367

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +RK IE             IT+S G+ +    E  +T+I R D ALY AK +GRN+V  
Sbjct: 368 IRKNIEKHLFEYVK----QITVSIGVTQYTTNEESTTLIKRVDNALYEAKANGRNQVAF 422


>gi|254410216|ref|ZP_05023996.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196183252|gb|EDX78236.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 327

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 55/181 (30%), Positives = 92/181 (50%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            + ++L  +   + +L+ +D L+G+ N   F   L             LS++  DID+FK
Sbjct: 145 QLYQKLEQANRELQRLATLDGLTGVANRRRFDQYLDDEWWRMIREESPLSLILCDIDFFK 204

Query: 141 QINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           + ND +GH  GD  +  ++D L      +   V R GGEEFA     ++   A+++A +L
Sbjct: 205 KYNDTYGHQAGDACLRRVADALRFCAKRSVDLVARYGGEEFAIVLPNTTTIGASLVAEEL 264

Query: 200 RKIIENSQINISSGP-SIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R ++   +I  ++   S ++T+S G+A        P + ++  AD ALY AK SGRNR V
Sbjct: 265 RSLVHGLKITHAASAISEYVTLSLGVASLYPEPDTPPAKLVAEADMALYQAKASGRNRYV 324

Query: 257 C 257
            
Sbjct: 325 A 325


>gi|148545403|ref|YP_001265505.1| diguanylate cyclase [Pseudomonas putida F1]
 gi|148509461|gb|ABQ76321.1| diguanylate cyclase [Pseudomonas putida F1]
          Length = 645

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 11/184 (5%)

Query: 82  LGYISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           L     S+  E       + +    + +D L+GL N +A+   +             L++
Sbjct: 460 LSERVASMEHEALGYREHLEEQRQKALLDPLTGLPNRAAWSEQVEREMLDWQENGGHLAM 519

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK+INDN+GH  GDKV+  ++DQL        F+ R GGEEF      ++   
Sbjct: 520 AILDLDHFKRINDNYGHLAGDKVLKIVADQLRKRLRGRDFIARFGGEEFVLLLPQTTPAV 579

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           AA +A  LR  +E    +   G  + IT S G+      E    ++ RAD ALY AK+ G
Sbjct: 580 AAQMAEVLRATVEACPFHFK-GERVVITTSIGLGAFRSGERSDQVLKRADAALYRAKEQG 638

Query: 252 RNRV 255
           RNRV
Sbjct: 639 RNRV 642


>gi|120598731|ref|YP_963305.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|120558824|gb|ABM24751.1| diguanylate cyclase [Shewanella sp. W3-18-1]
          Length = 368

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 58/180 (32%), Positives = 85/180 (47%), Gaps = 10/180 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
           G  ++ L      +S  +  D L+ L N  A+       I      + + S++  DID F
Sbjct: 188 GQEVQHLKSEMENLSLAAMTDQLTSLYNRRAYEIAIQDHIHRAQEQHSRCSLLIVDIDRF 247

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQ ND +GH +GDKV+A+++  L        FV R GGEEF      +   +A  +A  L
Sbjct: 248 KQFNDTYGHQIGDKVLAYVALALKQCVRGDDFVARYGGEEFVVLLPNTHFHDALQVAETL 307

Query: 200 RKIIENSQINISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R+ I    + I     +    IT+S G+A     +   T+  RAD+ALY AK  GRN V 
Sbjct: 308 RERISERHLTIGKDKKLSLGAITVSIGLASLQEGDDAETLFSRADKALYEAKSDGRNCVR 367


>gi|332702569|ref|ZP_08422657.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552718|gb|EGJ49762.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 684

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 10/212 (4%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +  E LS+  +   +  L  Y++    + E+  S  ++   +  D L+GL N       L
Sbjct: 216 VYPEWLSISSVRDGLGKLQRYVAVFHDITEIKASQEKVRHQAHHDVLTGLPNRLLLKDRL 275

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                      +K++++F D+D FK IND+ GHP+GD ++  ++ +L  V      V RL
Sbjct: 276 ATSLTHMARSGQKVALLFMDVDNFKHINDSLGHPLGDLLLQAVAARLKEVMRDDDTVARL 335

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPIS 234
           GG+EF    + + E E   +A  +R +          G ++ +T S GIA      +   
Sbjct: 336 GGDEF-VILVEALESENLAIATAMRLLEAFRVPFHIKGHALTVTPSVGIALYPDDGDDAE 394

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           T+I  AD A+Y AK+ GRN    ++   N   
Sbjct: 395 TLIKNADMAMYRAKEKGRNTFQLYTSALNERA 426


>gi|254426835|ref|ZP_05040542.1| GGDEF domain protein [Alcanivorax sp. DG881]
 gi|196193004|gb|EDX87963.1| GGDEF domain protein [Alcanivorax sp. DG881]
          Length = 395

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 65/261 (24%), Positives = 115/261 (44%), Gaps = 21/261 (8%)

Query: 23  SPHTFMIYFSIFFSIFIATVIFIANIFLFYIG------LTPFYGLEYILVENLSLVIISI 76
           SP    I F     ++  TV  +  + L ++          ++  +      LS   I+ 
Sbjct: 129 SPLVGFILFGFRPVVWGFTVSTVMVLLLSWLAARGHDIYALYFRTDPAAKGYLSYYWIAS 188

Query: 77  TISLLLGYISGSI------LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLG 123
           T++  + +++G +      L+       ++  ++  D L+GL N  A        ++   
Sbjct: 189 TVAFSVPFVAGVLTLVSLLLRRWVYREAQVRAMAVQDPLTGLSNRRALFDQFAHEMARAR 248

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
              E LS+   D+D+FKQIND  GH  GD V+  +++ L         +GR+GGEEF   
Sbjct: 249 RTGEALSVCVMDLDHFKQINDRHGHAAGDTVLVRVANLLRECLRETDRIGRIGGEEFVLV 308

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRAD 241
              +  + A  +    R  +  + + +  G  + ++ S G+  A    +   S ++ RAD
Sbjct: 309 LPDTGHEGAEKVIERCRAALVGTPVMLDVGEPLTVSASFGVVTALAGEQATESQLVSRAD 368

Query: 242 QALYVAKKSGRNRVVCFSDIE 262
            ALY+AKK GRNRV  +S   
Sbjct: 369 DALYLAKKRGRNRVEFWSSAM 389


>gi|149909932|ref|ZP_01898581.1| sensory box/GGDEF family protein [Moritella sp. PE36]
 gi|149806946|gb|EDM66905.1| sensory box/GGDEF family protein [Moritella sp. PE36]
          Length = 320

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 74/270 (27%), Positives = 125/270 (46%), Gaps = 29/270 (10%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI 64
             +    WL     +ES     F++  + F S      IF  N         P  G+   
Sbjct: 60  FPELPEAWL--RSKIES----VFLLKNNAFTSWEQRPYIFRFN------NYRPVTGISEF 107

Query: 65  LVENLSLVIISIT------ISLLLGYISGSILKELFI--SYNRISQLSRIDCLSGLLNHS 116
           + +N++++ ++        +SL++  ++   +  L +  +   +++LS+ D L+ L N  
Sbjct: 108 MYQNMTIIPLASLTGEVTHVSLIIYDVTDIAINRLQLDKANAELARLSQTDALTQLNNRH 167

Query: 117 AF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            +          +  Y +  + +  DID+FK +ND +GH  GDKVIA +S  +       
Sbjct: 168 RWNNLIDSEFKRVKRYEQISTFMMLDIDHFKNVNDTYGHVAGDKVIAEVSRVIRENVRET 227

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
            F  R GG+EFA     ++   A ILA+ LR+ IEN+ I      +I +TIS G+AE   
Sbjct: 228 DFSARYGGDEFAICLTNTTAHNAIILADRLRQAIENTVIT-DDDNNIKVTISIGMAEFTE 286

Query: 230 K-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             + + T    AD ALY  K++GRN+   F
Sbjct: 287 NTDTVDTWTKNADCALYKGKENGRNQYSIF 316


>gi|163760508|ref|ZP_02167589.1| periplasmic sensor diguanylate cyclase [Hoeflea phototrophica
           DFL-43]
 gi|162282123|gb|EDQ32413.1| periplasmic sensor diguanylate cyclase [Hoeflea phototrophica
           DFL-43]
          Length = 442

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 95/178 (53%), Gaps = 8/178 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
             ++  +  +   +S+++R D L+GL N  AF ++L         + E+ +++  DID+F
Sbjct: 251 NHMIGRIHEAEEVLSEMARRDELTGLANRRAFEATLPDMMGRAKRFEEQFTLLAIDIDHF 310

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQ+ND  GH  GD+V+  ++  ++        V R+GGEEFA     +    A + A  +
Sbjct: 311 KQVNDTHGHAAGDEVLRAVARTMMDTMRDGDRVFRVGGEEFAVLLPRTDGAPARLAAERI 370

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R+ +E + +++ +   I +T+S G+A        S ++  AD ALY AK  GRNR++ 
Sbjct: 371 RQAVEMAPVSLKA-TEIAVTVSIGMASTLDFPEKSDLLEAADAALYRAKHEGRNRIIV 427


>gi|158424341|ref|YP_001525633.1| GGDEF domain-containing protein [Azorhizobium caulinodans ORS 571]
 gi|158331230|dbj|BAF88715.1| GGDEF domain protein [Azorhizobium caulinodans ORS 571]
          Length = 510

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 64/204 (31%), Positives = 101/204 (49%), Gaps = 17/204 (8%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSAFIS-- 120
            + L+    S+ + LL+   + ++ +E+           +LS+ D L+GL N   F    
Sbjct: 296 AQWLAGAATSVVLCLLILGAAVALRREMLRRFEIEQEFLRLSQTDSLTGLPNRRHFDEFG 355

Query: 121 -----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGR 174
                        ++++  DID+FKQ+ND  GHP GD+V+  +SD +         F GR
Sbjct: 356 QREWQRAARQRSSIAVLMVDIDHFKQVNDRIGHPGGDRVLREVSDIIRASLHRPGDFAGR 415

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEP 232
            GGEEFA     +    AA +A  +R  IE    N + G +  +T+S G+A      K  
Sbjct: 416 YGGEEFAIILPETDAPAAAHVAERIRAAIEA---NTAEGVA-PVTVSIGLAAGLAAPKGT 471

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
           ++ ++  AD ALY AK++GRNRVV
Sbjct: 472 LAEMMIAADHALYRAKETGRNRVV 495


>gi|297537744|ref|YP_003673513.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297257091|gb|ADI28936.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylotenera sp. 301]
          Length = 985

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 57/210 (27%), Positives = 101/210 (48%), Gaps = 12/210 (5%)

Query: 67  ENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAF------- 118
           E L++  +      ++ Y+   + + ++  S NR+ +L   D L+GL N           
Sbjct: 523 EWLTITAVKDNAGQVVNYVGVFADITDVKRSQNRLHELVNHDPLTGLPNRRLLNELLEHS 582

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           I      N K++++F D+D FK +ND  GH VGDK++   S ++ +       V RLGG+
Sbjct: 583 IKRAERDNHKIALLFIDLDRFKAVNDTLGHQVGDKLLLEASRRISLSMRDSDVVARLGGD 642

Query: 179 EFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTI 236
           EF       S+  +A+++A  +   ++  + NI  G  I+I+ S GI+        +  +
Sbjct: 643 EFVVMMDMISKPSDASLVAKKIIHALQ-IEFNI-DGHEIYISASVGISTFPKDCADVEGL 700

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           I  AD A+Y  K  G+N    +SD  + + 
Sbjct: 701 IKAADIAMYQVKNKGKNNHCFYSDDLSKSA 730


>gi|222055390|ref|YP_002537752.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. FRC-32]
 gi|221564679|gb|ACM20651.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. FRC-32]
          Length = 912

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 11/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             + +   + + I QL+  D L+GL N S     LG         N K++I+F D+D FK
Sbjct: 466 RDITDRKKAEDEIQQLAYYDTLTGLPNRSLLQDRLGQGIVQAVRDNRKVAIMFLDLDRFK 525

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
            IND  GH  GD ++A ++++L         V R+GG+EF          ++   +A  +
Sbjct: 526 SINDTLGHVAGDSLLATVAERLTECVRETDTVARIGGDEFVIIISAIEHAEDLNKIAEKI 585

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              I  S+  + +   I IT S GIA        +  ++  AD A+Y AK  G+N    F
Sbjct: 586 LAAI--SKPLVLNDQEIFITASIGIAIYPEDGTDVQGLLKNADLAMYKAKDQGKNAFQYF 643

Query: 259 SDIEN 263
           S   N
Sbjct: 644 SREMN 648


>gi|218681657|ref|ZP_03529458.1| response regulator PleD [Rhizobium etli CIAT 894]
          Length = 173

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 9/165 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL N     + L        +    LS++  DID FKQ+ND FGH  GD+V
Sbjct: 6   ELAVTDPLTGLYNRRYLDNHLNVLFNRSMARGRPLSVLITDIDRFKQVNDTFGHDGGDEV 65

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213
           +   + ++           R GGEEF      +S + AA +A  LR  +E++   +  +G
Sbjct: 66  LREFASRVRSTIRGADLACRYGGEEFVVVMPDTSPEIAATVAERLRAAVESTPFMLKRAG 125

Query: 214 PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
            ++++T S GIA R         ++ +AD ALY AK +GRNRVV 
Sbjct: 126 EALNVTASFGIASRIAAVLTPDQLMKQADLALYEAKNTGRNRVVA 170


>gi|330874463|gb|EGH08612.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 389

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 60/183 (32%), Positives = 93/183 (50%), Gaps = 12/183 (6%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           +  Y+S    +        ++ +++  D L+GL N  A   +L           +  S++
Sbjct: 201 ITHYVSISQDVTTRLGREQKLLEIAHSDPLTGLNNRRAAEHTLERLIDTARISGKPFSLI 260

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK +ND +GHP GD+V+  ++  L           R GGEEF      SS   A
Sbjct: 261 IGDIDHFKSVNDRYGHPAGDRVLTSVAVILKQRIRLQDVAARWGGEEFLILVPDSSLDHA 320

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           A LA+ +RK +E+  I      +  +TIS G+A+    E  +++I RAD+ALY AK+ GR
Sbjct: 321 AELADRIRKGVEDLLIP----NTGSVTISLGVAQLSPGETAASLIQRADKALYQAKRRGR 376

Query: 253 NRV 255
           NRV
Sbjct: 377 NRV 379


>gi|39936139|ref|NP_948415.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009]
 gi|39649993|emb|CAE28517.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris
           CGA009]
          Length = 449

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 59/228 (25%), Positives = 101/228 (44%), Gaps = 14/228 (6%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
           I  +  +   +   + L+P   L Y+ +  L + I    ++L+L   +  +L  LF+S  
Sbjct: 168 ITLIYLLGTPYSVAMVLSP---LPYMYIVGLLVPIWGFGMALVLLE-NYEVLLNLFLSER 223

Query: 99  RISQLSRIDCLSGLLNH---SAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +  +L+  D L+GL N          L      S    L++   D+D FK  ND FGH  
Sbjct: 224 KNRRLANYDSLTGLPNRVMKRQRFERLLRGADASAPAPLTVFCLDLDGFKSANDRFGHAA 283

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  ++++L         V R+GG+EF     G+   +AA +A  +   I      +
Sbjct: 284 GDAVLVSVAERLRSSVREQDQVFRVGGDEFVVLLPGTRTDDAAPVAQRIIAAIAE-PFEL 342

Query: 211 SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +    + I +S G A        +  ++  AD A+Y AK+ G+ R V 
Sbjct: 343 AGHGRLDIGVSIGAATFPTDGSTVDDLLRAADIAMYEAKRQGKGRFVA 390


>gi|218887438|ref|YP_002436759.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758392|gb|ACL09291.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 1000

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
              + +       + + +  D L+G+ N   F       +     Y   L+++  D+D F
Sbjct: 798 ARDITDRKRLEQALMREATTDPLTGIRNRRQFFVDAEREMGRAVRYGRPLAVLMLDLDRF 857

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND FGH  GD V+                +GRLGGEEFAA  L +   +A   A  L
Sbjct: 858 KRVNDRFGHHAGDAVLMGCVQACQQALRETDILGRLGGEEFAAVLLETDLDDALAAAERL 917

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           R+ +E   +  S G  +  T+S G+A R   +  +  I+ RAD ALY AK++GRNRV+ 
Sbjct: 918 RRAVEEMDVPFS-GQRLRCTVSIGLALRGPGDGALDDILRRADSALYAAKEAGRNRVML 975


>gi|170736188|ref|YP_001777448.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3]
 gi|169818376|gb|ACA92958.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3]
          Length = 510

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 88/199 (44%), Gaps = 15/199 (7%)

Query: 72  VIISITISLLLGYIS------GSILKELFISYNRISQLSRIDCLSGLLNHSAFI------ 119
           +   + +SL   +I+         LK    +  ++ +L+  D L+GL N   F       
Sbjct: 302 IWTVVLMSLFTAFIAWGSLALSRELKRRQEAEAKLYRLAHTDSLTGLDNRGTFDTVLAKE 361

Query: 120 -SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGG 177
                     LS++F D+D+FK  ND +GHP GD V+  ++  L          V R GG
Sbjct: 362 TQRASRSGRPLSVLFVDVDHFKAFNDYYGHPAGDDVLRQVAQSLSRCLRRDSDHVARYGG 421

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTI 236
           EEF      +    AA +A  +R+ I    I         +T+S G A         +T+
Sbjct: 422 EEFVVTLPDTDGPGAATVAEGIRRAIAELGIEHVKSQYGRVTVSIGTATADDGRMNAATL 481

Query: 237 IYRADQALYVAKKSGRNRV 255
           + RAD+ALY AK  GRNRV
Sbjct: 482 LRRADEALYRAKSGGRNRV 500


>gi|302878209|ref|YP_003846773.1| response regulator receiver modulated diguanylate cyclase
           [Gallionella capsiferriformans ES-2]
 gi|302580998|gb|ADL55009.1| response regulator receiver modulated diguanylate cyclase
           [Gallionella capsiferriformans ES-2]
          Length = 635

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 8/173 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL +S  R+  L+  D L+GL N    +  L             +  +  DID+FK IND
Sbjct: 463 ELALSNKRLQALAVTDALTGLPNRRYMMERLEQEWALATRAGRPVCCMMVDIDHFKMIND 522

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH +GD+ +  ++  L         + R+GGEEF      S  +   I A  LR+ + 
Sbjct: 523 TYGHQLGDEALKLVASSLQQAMRKQDVLCRVGGEEFMVICPDSDNKAGFIYAERLRQHVA 582

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             Q  ++SG S+ +T+S G+A+         ++++AD  LY AK +GRN  + 
Sbjct: 583 -FQPVLASGKSLRLTVSIGLADNAGLASPEAMMHQADLRLYAAKAAGRNCTII 634


>gi|224824142|ref|ZP_03697250.1| diguanylate cyclase [Lutiella nitroferrum 2002]
 gi|224603561|gb|EEG09736.1| diguanylate cyclase [Lutiella nitroferrum 2002]
          Length = 528

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 64/216 (29%), Positives = 95/216 (43%), Gaps = 20/216 (9%)

Query: 60  GLEYILVENLSLVIISITISLLLGYI-----------SGSILKELFISYNRISQLSRIDC 108
            +  +L    +   +   I+  +G+            S  ++ EL  + ++++ L+R D 
Sbjct: 299 AVTTMLATTWTFYWVFALIAAFVGFFGYRMFTYWLDSSTRLVNELAEANSKLAHLARTDT 358

Query: 109 LSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GL N  A   +L           E+ S+V  DID+FK +ND +GH  GD VI  L   
Sbjct: 359 LTGLPNRRALEEALEQQLQRSRRNGEQASLVLLDIDHFKVVNDRYGHDAGDAVIRALGKA 418

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +          GR GGEEF        E+ AA  A  LR  +E+S +       +  TIS
Sbjct: 419 MSETIRNVDVAGRWGGEEFLVVLANVDEEGAAAFAERLRTRVESSTVAHGELH-VRYTIS 477

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            G+A           + RAD+ALY AK  GRNR   
Sbjct: 478 LGVAPLSTPHR-EAWLKRADEALYRAKLDGRNRTAI 512


>gi|83721143|ref|YP_443336.1| GGDEF domain-containing protein [Burkholderia thailandensis E264]
 gi|83654968|gb|ABC39031.1| GGDEF domain protein [Burkholderia thailandensis E264]
          Length = 628

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 107/234 (45%), Gaps = 22/234 (9%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI------LK 91
           ++A  IF A  F+        +G+   L+   S   +  +   L+  ++ S+      L+
Sbjct: 402 WLAHAIFAAGFFMLS------FGVVQALITTRSFATV-YSQQDLMARLAESMARTEGALQ 454

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           EL  +  ++  L+  D L+G  N   FI  + +   +        S++  D+D FK IND
Sbjct: 455 ELKRTNQKLEHLATTDPLTGASNRRKFIEQMQAEIARAKRDGTAFSLLALDLDNFKTIND 514

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH VGD V+     Q +        + R+GGEEF           A+ +A  +R  I 
Sbjct: 515 NYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRTTIA 574

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           N+   I  G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV 
Sbjct: 575 NASFGI-DGTHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 627


>gi|91974548|ref|YP_567207.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91681004|gb|ABE37306.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Rhodopseudomonas palustris BisB5]
          Length = 743

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 60/189 (31%), Positives = 92/189 (48%), Gaps = 14/189 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQ 141
            + E + S  +I+ ++R D L+GLLN  AF          L  + E  S++  D+D FK 
Sbjct: 298 DITERYRSEQQIAHMARHDLLTGLLNRGAFHERMDEACARLRRWGETFSVIMLDLDRFKL 357

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE--QEAAILANDL 199
           +ND+ GHP GD ++  +  +L         + RLGG+EFA     + +  +EA   A+ +
Sbjct: 358 VNDSLGHPAGDALLRAVVSRLKACIRETDVLARLGGDEFAVLQTRTKDSYEEAVAFADRI 417

Query: 200 RK-IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +I+  +I    G  + I+ SAGIA    H      +I  AD ALY AK +GRN  V 
Sbjct: 418 VNCLIDPIEI---EGHQLVISTSAGIALAPQHGTDSDELIKNADLALYQAKAAGRNGYVT 474

Query: 258 FSDIENNTC 266
           F     +  
Sbjct: 475 FETAMKDRA 483


>gi|148256093|ref|YP_001240678.1| response regulator PleD [Bradyrhizobium sp. BTAi1]
 gi|146408266|gb|ABQ36772.1| response regulator receiver modulated diguanylate cyclase
           [Bradyrhizobium sp. BTAi1]
          Length = 466

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 9/171 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N     + L        S  + L+++  DIDYFK IND +GH  GD V
Sbjct: 284 EMAITDALTGLHNRRYMETHLATLADQAASRGKPLALMMLDIDYFKAINDTYGHDAGDDV 343

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   + ++           R GGEEF      +    A ++A  LR+ + N    +  G 
Sbjct: 344 LREFAMRVRKSIRGIDLACRYGGEEFVIVMPETDLHVAGMVAERLRRSVANEPFAVHKGE 403

Query: 215 -SIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             I +T S GI+      EPI+ ++ RAD ALY AK  GRNR V  + +  
Sbjct: 404 KRIEVTTSIGISTLEQKGEPIADVMKRADTALYRAKNDGRNRAVAIAPVHQ 454


>gi|310780015|ref|YP_003968347.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
 gi|309749338|gb|ADO83999.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
          Length = 320

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 10/183 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFF 134
           +  +    + E+  S  ++ +LS  D L+G+ N      S+     +        S++  
Sbjct: 131 MSLVLIDDITEIEKSRKKLHELSITDELTGIYNRRFIFESIKKEISRSERNGGIYSLMLI 190

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK++ND  GH  GD+V+  ++ ++          GR GGEEF      +  + A +
Sbjct: 191 DIDFFKKVNDLCGHLGGDEVLKNVASEIKNNIRNMDLFGRFGGEEFILLLPETDLELALL 250

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            A  LRK +E+        P   +T+S G+ +    E +  I+ R D+ALY AK +GRNR
Sbjct: 251 CAERLRKAVESITFPKVGHP---VTVSIGVGQYSIGETLDDILDRVDKALYKAKNNGRNR 307

Query: 255 VVC 257
           V  
Sbjct: 308 VEV 310


>gi|217968133|ref|YP_002353639.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Dictyoglomus turgidum DSM 6724]
 gi|217337232|gb|ACK43025.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Dictyoglomus turgidum DSM 6724]
          Length = 1073

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 62/181 (34%), Positives = 84/181 (46%), Gaps = 10/181 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVF 133
           +  YIS +I  E    +  I +L+ ID L+G+LN  A              YN  LS + 
Sbjct: 691 IANYISIAI--ENAFLFEEIKKLATIDPLTGVLNRRALEEGFNKDVERAKRYNRPLSAIV 748

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK  ND +GH  GD+V+  L+  L         VGR GG+EFA     ++ + A 
Sbjct: 749 IDVDNFKLFNDTYGHTFGDQVLRELAKILKNSCRKTDLVGRYGGDEFAIILPETNLEGAI 808

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGR 252
            LA  L K I N  I   +   I I IS GIA           ++  AD A+Y AK SG 
Sbjct: 809 KLAERLLKSIRNLTITTPTNNKIPIKISMGIASYPDDTNEPEKLLTLADIAMYKAKTSGG 868

Query: 253 N 253
           +
Sbjct: 869 D 869


>gi|212637691|ref|YP_002314216.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212559175|gb|ACJ31629.1| GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 485

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 62/197 (31%), Positives = 95/197 (48%), Gaps = 14/197 (7%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
           NL + I      LL+  ++      L     ++  ++  D L+G  N  AF         
Sbjct: 294 NLGMSIFVTLAILLIANLT------LGKYQRKLELMASTDKLTGAANRQAFEEYFSRSLA 347

Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                +  +S++  DID+FK +ND  GH +GD VI  +S+ L         + R GGEEF
Sbjct: 348 RSVLDSTPMSVLLVDIDHFKSVNDQHGHNIGDLVIKTVSNMLKAELREQDLLCRWGGEEF 407

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                      A  +A  +RK +   +I++ +G  I++TIS+G+AE    E    ++ RA
Sbjct: 408 LILLPNIDLSHACEIAELIRKSVAERRIHV-NGCEINVTISSGVAEYRVTEKAEDVVNRA 466

Query: 241 DQALYVAKKSGRNRVVC 257
           D ALY AK+ GRNRVV 
Sbjct: 467 DIALYQAKEQGRNRVVL 483


>gi|150396149|ref|YP_001326616.1| response regulator PleD [Sinorhizobium medicae WSM419]
 gi|150027664|gb|ABR59781.1| response regulator receiver modulated diguanylate cyclase
           [Sinorhizobium medicae WSM419]
          Length = 455

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 86/175 (49%), Gaps = 9/175 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
            L  S  +  +L+  D L+GL N           I   G+    LSI   DID FK++ND
Sbjct: 278 RLRASVQQTIELAVTDDLTGLHNRRYLENHLKLLIDRAGARGRPLSICITDIDRFKRVND 337

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD V+   ++++           R GGEEF      ++ + AAI+A  LR  +E
Sbjct: 338 TYGHDAGDDVLREFANRVRATVRGADLACRFGGEEFVVVMPDTTPEMAAIVAERLRLSVE 397

Query: 205 NSQINISSGPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +I+   ++  +T S GIA  R   +    ++ RAD ALY AK  GRNRVV 
Sbjct: 398 SRGFDIAEAATVLTVTASLGIASLRPDGDTAEALLKRADMALYEAKNGGRNRVVA 452


>gi|313496500|gb|ADR57866.1| Diguanylate cyclase [Pseudomonas putida BIRD-1]
          Length = 645

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 89/184 (48%), Gaps = 11/184 (5%)

Query: 82  LGYISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           L     S+  E       + +    + +D L+GL N +A+   +             L++
Sbjct: 460 LSERVASMEHEALGYREHLEEQRQKALLDPLTGLPNRAAWSERVEREMLDWQENGGHLAM 519

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK+INDN+GH  GDKV+  ++DQL        F+ R GGEEF      ++   
Sbjct: 520 AILDLDHFKRINDNYGHLAGDKVLKIVADQLRKRLRGRDFIARFGGEEFVLLLPQTTPAV 579

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           AA +A  LR  +E    +   G  + IT S G++     E    ++ RAD ALY AK+ G
Sbjct: 580 AAQVAEVLRATVEACPFHFK-GERVVITTSIGLSAFRSGERSDQVLKRADAALYRAKELG 638

Query: 252 RNRV 255
           RNRV
Sbjct: 639 RNRV 642


>gi|209967121|ref|YP_002300036.1| diguanylate cyclase, putative [Rhodospirillum centenum SW]
 gi|209960587|gb|ACJ01224.1| diguanylate cyclase, putative [Rhodospirillum centenum SW]
          Length = 1037

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 66/219 (30%), Positives = 108/219 (49%), Gaps = 15/219 (6%)

Query: 56   TPFYGLEYILVENLSLVIISITISLLLGYIS------GSILKELFISYNRISQLSRIDCL 109
              F  L  +L   L + I+    S+L    +          +EL ++  R+ QL+  D L
Sbjct: 809  NAFRALMVMLAALLVVAIVQGRTSVLRRRQAQLQKEVAERTRELELANRRLEQLANTDPL 868

Query: 110  SGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
            +G+LNH AF ++L         Y    S++  D+D+FK++ND +GH  GD V+  L+D++
Sbjct: 869  TGILNHRAFWAALEAEWDRACRYGRVFSVLQIDMDHFKRVNDTYGHAAGDAVLQTLTDRV 928

Query: 163  VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
              +  +    GRLGGEEFA     +  + A  +A  +   I    + +  G +I I+ S 
Sbjct: 929  GRLLRSVDRFGRLGGEEFAVLLPDTGYEGAVQVAERILDAIRTEPV-LFEGTAIPISASI 987

Query: 223  GIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            G +  R     ++ I++RAD ALY AK  GR++     D
Sbjct: 988  GGSSLRPDDANVNVILHRADAALYAAKGRGRSQAAFAED 1026


>gi|71282087|ref|YP_269787.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71147827|gb|AAZ28300.1| sensory box/GGDEF/EAL/CBS domain protein [Colwellia psychrerythraea
           34H]
          Length = 858

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 85/185 (45%), Gaps = 11/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFK 140
           S + E  ++  RI  L+  D L+ L N   F              N K+++ F D+DYFK
Sbjct: 405 SDISERKLAEKRIENLAFYDELTQLPNRRLFFDRVDMALAIAHRKNNKMALFFIDLDYFK 464

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++NDN+GH +GD ++   + +L         V R+GG+EF      +  +E   +     
Sbjct: 465 EVNDNYGHRIGDLLLRSFAKRLTESSKEGDTVARIGGDEFTLLL--TDMREVDHICKACN 522

Query: 201 KIIENS-QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+E   Q     G +++IT S GIA           ++  AD A+Y AK  GRN    F
Sbjct: 523 RIVEKLRQPYHIEGHALNITTSIGIAVYPEDGTNEEELMKNADIAMYRAKDIGRNSFQLF 582

Query: 259 SDIEN 263
           +   N
Sbjct: 583 TPAMN 587


>gi|298506546|gb|ADI85269.1| sensor diguanylate cyclase/phosphodiesterase, CHASE4 and PAS
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 873

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 11/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + E       +   +  D L+GL N S     L           + ++++ FD+D FK 
Sbjct: 422 DITERRRFQEELLHQATHDTLTGLPNRSLLEDRLNQAVEGARRRGQMVALLMFDLDNFKV 481

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLR 200
           +ND  GH  GD+++  ++ ++     +     RLGG+EF       +   +A  +A   R
Sbjct: 482 VNDTLGHTAGDQLLRSVAARIRSFVRSCDTFARLGGDEFVIVLTNLTRMDDAVTVAESFR 541

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I+         G  I IT S GI+      + +  +I +AD A+Y  K+SGRN    F+
Sbjct: 542 NILA--MPFSLGGREIFITASMGISLFPDDGDTMEALIKKADTAMYHIKESGRNSFQFFA 599

Query: 260 DIENN 264
           +  N 
Sbjct: 600 EEMNQ 604


>gi|89092700|ref|ZP_01165653.1| GGDEF domain protein [Oceanospirillum sp. MED92]
 gi|89083212|gb|EAR62431.1| GGDEF domain protein [Oceanospirillum sp. MED92]
          Length = 322

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 115/222 (51%), Gaps = 17/222 (7%)

Query: 57  PFYGLEYILVENLSLVIISIT------ISLLLGYISGSILK--ELFISYNRISQLSRIDC 108
           P  G    + +N++L  ++        + +L+  ++ ++    EL  +  ++  LSR D 
Sbjct: 102 PITGSAPFMYQNITLTPLTSPTGEVDHVGILIYDVTDNVTSQLELQQANKKLQALSREDR 161

Query: 109 LSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GL N   +   L +  E+        ++V FDID+FK++ND +GH  GD+VI  ++D 
Sbjct: 162 LTGLFNRGYWEECLNNEFERFNRSQMTSTLVMFDIDHFKRVNDTYGHQAGDEVIRVVADT 221

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L         +GR GGEE+ A   G++ + A I A  LR  IE+  +       +  TIS
Sbjct: 222 LREQARKTDILGRYGGEEYGAILTGTNGENAMIFAERLRARIESLVVPYGE-HQLKFTIS 280

Query: 222 AGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            G++E  ++ +     + ++DQALY +K+SGRN V  F + E
Sbjct: 281 IGVSELTYEHDSPKEWLEQSDQALYKSKQSGRNWVTLFGESE 322


>gi|89093798|ref|ZP_01166744.1| sensory box/GGDEF/GAF/EAL domain protein [Oceanospirillum sp.
           MED92]
 gi|89081928|gb|EAR61154.1| sensory box/GGDEF/GAF/EAL domain protein [Oceanospirillum sp.
           MED92]
          Length = 970

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 56/196 (28%), Positives = 92/196 (46%), Gaps = 13/196 (6%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132
           LL Y+S  S +  L     ++ +++  D L+GL N       L         +   L++ 
Sbjct: 396 LLRYVSLFSDITALKKQQQQLEKIAHYDALTGLPNRVLLSDRLQQAILQAKRHKRLLAVA 455

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQE 191
           FFD+D FK++ND  GH +GDK++  L+++          + RLGG+EF        S +E
Sbjct: 456 FFDLDGFKEVNDTHGHSIGDKLLIELAERSKQALREGDSLARLGGDEFVVVLQDLHSSEE 515

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKK 249
           +  +   L K I        +   I ++ S GI      +      +I +ADQA+YVAK+
Sbjct: 516 SLPVLERLLKAISKPIFM--NHTEICVSASIGITFYPQADEIDADQLIRQADQAMYVAKQ 573

Query: 250 SGRNRVVCFSDIENNT 265
           SG+NR   F    + +
Sbjct: 574 SGKNRYHIFDTEHDRS 589


>gi|107026991|ref|YP_624502.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
 gi|116691812|ref|YP_837345.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
 gi|105896365|gb|ABF79529.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
 gi|116649812|gb|ABK10452.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
          Length = 510

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 88/199 (44%), Gaps = 15/199 (7%)

Query: 72  VIISITISLLLGYIS------GSILKELFISYNRISQLSRIDCLSGLLNHSAFI------ 119
           +   + +SL   +I+         LK    +  ++ +L+  D L+GL N   F       
Sbjct: 302 IWTIVLMSLFTAFIAWGSLALSRELKRRQEAEAKLYRLAHTDSLTGLDNRGTFDTVLAKE 361

Query: 120 -SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGG 177
                     LS++F D+D+FK  ND +GHP GD V+  ++  L          V R GG
Sbjct: 362 TQRASRSGRPLSVLFVDVDHFKAFNDYYGHPAGDDVLRQVAQSLSRCLRRDSDHVARYGG 421

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTI 236
           EEF      +    AA +A  +R+ I    I         +T+S G A         +T+
Sbjct: 422 EEFVVTLPDTDGPGAATVAEGIRRAIAELGIEHVKSQYGRVTVSIGTATADDGRMNAATL 481

Query: 237 IYRADQALYVAKKSGRNRV 255
           + RAD+ALY AK  GRNRV
Sbjct: 482 LRRADEALYRAKSGGRNRV 500


>gi|319789587|ref|YP_004151220.1| diguanylate cyclase [Thermovibrio ammonificans HB-1]
 gi|317114089|gb|ADU96579.1| diguanylate cyclase [Thermovibrio ammonificans HB-1]
          Length = 358

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 8/177 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           +   +K+L     +  + + ID L+ + N ++F  ++          N   +++  DID 
Sbjct: 173 ANQQIKKLTQELEQTKKEASIDFLTQVANRASFDRAITDMVNDFYRRNYPFALLMIDIDN 232

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND +GH  GD V+  L+  L         + R GGEEFA    G +  +A  +A  
Sbjct: 233 FKKINDTYGHQAGDYVLRELARLLKSQLRARDIIARYGGEEFAILLPGVTFSQAIRVAER 292

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           LRK +E      +    I +TIS G+A        + ++ +AD+ALY+AK+SG+N+V
Sbjct: 293 LRKSVEKHLFKYND-QVIPVTISVGVAMMRDGLDETALVEKADKALYLAKRSGKNQV 348


>gi|294338946|emb|CAZ87290.1| putative diguanylate cyclase [Thiomonas sp. 3As]
          Length = 752

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 62/186 (33%), Positives = 89/186 (47%), Gaps = 11/186 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
            +   + E     + +  L+  D L+G+ N   F++                 ++  DID
Sbjct: 560 FAFKDITEAKARESELRNLAYTDTLTGIPNRRYFLARAALELRRAQREGSPFVVLALDID 619

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FKQIND FGH VGD VI   +   +     P   GRLGG+EFA     ++ Q A  +A 
Sbjct: 620 RFKQINDRFGHQVGDAVIRCFAQTCMQQLRGPDLCGRLGGDEFAILLPQTTRQVAFDVAQ 679

Query: 198 DLRKIIENSQINISSGPS-IHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRN 253
            LR  I+ +    SS P  + +T S GIAE            ++ RADQALY AK++GRN
Sbjct: 680 RLRLSIQEASCLPSSAPDGLTLTTSIGIAEFLPTSTLMDADELLDRADQALYRAKQAGRN 739

Query: 254 RVVCFS 259
           RV  ++
Sbjct: 740 RVEIWT 745


>gi|254513869|ref|ZP_05125930.1| ggef/eal/pas/pac-domain containing protein [gamma proteobacterium
           NOR5-3]
 gi|219676112|gb|EED32477.1| ggef/eal/pas/pac-domain containing protein [gamma proteobacterium
           NOR5-3]
          Length = 810

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 59/217 (27%), Positives = 104/217 (47%), Gaps = 16/217 (7%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISG-----SILKELFISYNRISQLSRIDCLSGL 112
           + G  +   ++ ++    +TIS + G  SG     + + +L  +  ++ +L+  D L+ L
Sbjct: 327 WRGEIWNRRKSGAVFPELLTISKIDGQNSGFVAIFTDITQLKETEEQLQKLAHYDPLTEL 386

Query: 113 LNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N       L          +E+L++ F DID FK IND+ GH  GDK++A  +++L  +
Sbjct: 387 PNRYLINERLQQSIRRAQRRSERLAVFFLDIDSFKNINDSLGHLAGDKLLAMTANRLREL 446

Query: 166 FGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                 VGR+GG+EF        S   A  +A  +   +   +  I  G S+ ++ S GI
Sbjct: 447 LRDDDTVGRIGGDEFLMLLEDINSPDVATNIAEKIIGALR--KPTILEGRSVSVSASVGI 504

Query: 225 AERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +      +   T++  AD A+Y AK+ GRN    +S+
Sbjct: 505 SIYPDDGQTAETLMSNADAAMYSAKEQGRNTFRFYSE 541


>gi|152998364|ref|YP_001343199.1| sensor diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150839288|gb|ABR73264.1| 7TM domain sensor diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 569

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 119/242 (49%), Gaps = 13/242 (5%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           H    +F +   +F    IF     LFY G   F  +    V  + +++ ++ +SL++ +
Sbjct: 331 HPIAPFFLLGHGLF---AIFSTMAVLFYKGKAEFTYINSHGV-GIGIMLEALVLSLIIAH 386

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
              S+   +  + + +  L+  D L+ L N   F       +       +  +I   DID
Sbjct: 387 RIRSLET-MKAAQDELKLLASTDSLTQLFNRRHFNTEAEYLLQKAKQLQQPAAIAMLDID 445

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK++ND  GH  GDKVI  +++ L+        + R GGEEF      +S  EA  L  
Sbjct: 446 HFKKVNDTHGHSFGDKVIIQVANTLMAECRQQDVLARYGGEEFIILMTNTSIGEAFNLVE 505

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256
            +R+ +  + + +++  S++ TISAGIA    + PI    I +AD+ALY AK++GRN+ +
Sbjct: 506 RIRQELAKATVILNNNQSVNFTISAGIAAIDLENPILKNSINQADKALYQAKENGRNQSL 565

Query: 257 CF 258
            +
Sbjct: 566 VY 567


>gi|189424637|ref|YP_001951814.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
 gi|189420896|gb|ACD95294.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
          Length = 631

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 94/191 (49%), Gaps = 19/191 (9%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFK 140
           + + E   +   I +L+  D L+GL N        +  ++  G YNE ++I+F D+D FK
Sbjct: 177 TDITERRAAAEEIERLAFFDSLTGLPNRVLLKDRLAQLLTRAGRYNEMVAILFIDLDRFK 236

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAIL 195
           ++ND  GH  GD+++  +S++L     +   V RLGG+EF     G +E++     AA L
Sbjct: 237 EVNDTLGHGTGDQLLQVVSERLTACLRSCDTVARLGGDEFVVLLPGITERDCVGDIAAKL 296

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
              L K ++           +  + S GI+      + +ST+   AD A+Y AK+ GRN 
Sbjct: 297 LQSLCKPVQ------LDAREVFTSGSIGISLWPIDGDSVSTLFKNADTAMYHAKEQGRNT 350

Query: 255 VVCFSDIENNT 265
              ++   + T
Sbjct: 351 YRFYTPQMHAT 361


>gi|296134962|ref|YP_003642204.1| diguanylate cyclase with PAS/PAC sensor [Thiomonas intermedia K12]
 gi|295795084|gb|ADG29874.1| diguanylate cyclase with PAS/PAC sensor [Thiomonas intermedia K12]
          Length = 752

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 62/186 (33%), Positives = 89/186 (47%), Gaps = 11/186 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
            +   + E     + +  L+  D L+G+ N   F++                 ++  DID
Sbjct: 560 FAFKDITEAKARESELRNLAYTDTLTGIPNRRYFLARAALELRRAQREGSPFVVLALDID 619

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FKQIND FGH VGD VI   +   +     P   GRLGG+EFA     ++ Q A  +A 
Sbjct: 620 RFKQINDRFGHQVGDAVIRCFAQTCMQQLRGPDLCGRLGGDEFAILLPQTTRQVAFDVAQ 679

Query: 198 DLRKIIENSQINISSGPS-IHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRN 253
            LR  I+ +    SS P  + +T S GIAE            ++ RADQALY AK++GRN
Sbjct: 680 RLRLSIQEASCLPSSAPDGLTLTTSIGIAEFLPTSTLMDADELLDRADQALYRAKQAGRN 739

Query: 254 RVVCFS 259
           RV  ++
Sbjct: 740 RVEIWT 745


>gi|237746065|ref|ZP_04576545.1| GGDEF/EAL/PAS/PAC/GAF-domain-containing protein [Oxalobacter
           formigenes HOxBLS]
 gi|229377416|gb|EEO27507.1| GGDEF/EAL/PAS/PAC/GAF-domain-containing protein [Oxalobacter
           formigenes HOxBLS]
          Length = 895

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 11/206 (5%)

Query: 67  ENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS---- 121
           E LS+  +  +   L  YI   + + E   +  ++  L+  D L+GL N +         
Sbjct: 424 EWLSIQTMRDSFGKLTHYIGLFADMTERKKTEEKVQWLAHFDALTGLPNRTLLRDRSNLA 483

Query: 122 ---LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                  +E L+++F D+D FK +ND+ GH  GD+++   + +L  V      V R GG+
Sbjct: 484 ISLAQRRHEPLALMFLDLDGFKNVNDSLGHNTGDELLKQFASRLKSVVREQDTVSRQGGD 543

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTII 237
           EF      +    A  +A  L  I   ++        +++T S GIA          T+ 
Sbjct: 544 EFVLVLPNTDTGGATSIAEKLLAI--AAEPYHIEPHELNLTASIGIAMYPADGIDFDTLS 601

Query: 238 YRADQALYVAKKSGRNRVVCFSDIEN 263
             AD A+Y  K+ GRN    F+    
Sbjct: 602 CSADTAMYRTKQGGRNNYCFFTTEMQ 627


>gi|254237209|ref|ZP_04930532.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126169140|gb|EAZ54651.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 1245

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 86/181 (47%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + +  L  +  R+   +  D L+GL N   F S L          N   +++F D+D FK
Sbjct: 792 ADISTLKYAQARLDYQAHHDPLTGLPNRLLFESRLNHALDEAREENRPGAVLFIDLDRFK 851

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
            IND+ GHP+GD ++  ++++L         V RLGG+EF     G  ++ +A  +A  L
Sbjct: 852 HINDSLGHPIGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARKL 911

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 +    + G    ++ S GIA      +   T++  AD A+Y AK  GR+R+  +
Sbjct: 912 LNAF--TAPFQADGHEFFVSASVGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSRIEYY 969

Query: 259 S 259
           +
Sbjct: 970 T 970


>gi|299534010|ref|ZP_07047362.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298717919|gb|EFI58924.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 501

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 108/229 (47%), Gaps = 12/229 (5%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
           + ++ FI  +   +  +   +    +++  L  V+ +  I L   +++   LK    + +
Sbjct: 251 LPSLPFIIMVAKAHSDIFTAWRQRALIIACLMGVLTAAFIGLSFAFVTQ--LKRRIHAES 308

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
            ++ L+R D L+GL N       L     +        S++F DID FK  ND +GH  G
Sbjct: 309 ELALLARTDGLTGLNNRRRLDEMLDQEWHRARRNHSIFSLLFVDIDRFKAYNDTYGHQAG 368

Query: 152 DKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D VIA ++  +   +        R GGEEF      +S + A+ LA  +R  +    +  
Sbjct: 369 DDVIATIAKCIGDNIRRPGDIAARYGGEEFIVVLPDTSLEGASCLAESIRAAVSQLSVEH 428

Query: 211 SSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S     +IT+S G A  E  H   ++++I  AD+ALY AK +GRN+VV 
Sbjct: 429 SGSEFGYITVSIGCAAWEPEHDADVASVIRSADEALYKAKTTGRNKVVV 477


>gi|26986874|ref|NP_742299.1| GGDEF domain-containing protein [Pseudomonas putida KT2440]
 gi|24981476|gb|AAN65763.1|AE016202_6 GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 645

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 11/184 (5%)

Query: 82  LGYISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           L     S+  E       + +    + +D L+GL N +A+   +             L++
Sbjct: 460 LSERVASMEHEALGYREHLEEQRQKALLDPLTGLPNRAAWSERVEREMLDWQENGGHLAM 519

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK+INDN+GH  GDKV+  ++DQL        F+ R GGEEF      ++   
Sbjct: 520 AILDLDHFKRINDNYGHLAGDKVLKIVADQLRKRLRGRDFIARFGGEEFVMLLPQTTPAV 579

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           AA +A  LR  +E    +   G  + IT S G+      E    ++ RAD ALY AK+ G
Sbjct: 580 AAQVAEVLRATVEACPFHFK-GERVVITTSIGLGAFRSGERSDQVLKRADAALYRAKELG 638

Query: 252 RNRV 255
           RNRV
Sbjct: 639 RNRV 642


>gi|320323008|gb|EFW79098.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320329869|gb|EFW85857.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 380

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 60/183 (32%), Positives = 93/183 (50%), Gaps = 12/183 (6%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           +  Y+S    +        ++ +++  D L+GL N  A   +L           +  S++
Sbjct: 192 ITHYVSISQDVTTRLGREQKLLEIAHSDPLTGLNNRRAAEHTLERLIDTARISGKPFSLI 251

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK +ND +GHP GD+V+  ++  L           R GGEEF      SS   A
Sbjct: 252 IGDIDHFKSVNDRYGHPAGDRVLTSVAVILKQRIRLQDVAARWGGEEFLILVPDSSLDHA 311

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           A LA+ +RK +E+  I      +  +TIS G+A+    E  +++I RAD+ALY AK+ GR
Sbjct: 312 AELADRIRKGVEDLLIP----NTGSVTISLGVAQLSPGETAASLIQRADKALYQAKRRGR 367

Query: 253 NRV 255
           NRV
Sbjct: 368 NRV 370


>gi|226357685|ref|YP_002787424.1| diguanylate cyclase [Deinococcus deserti VCD115]
 gi|226319927|gb|ACO47920.1| putative diguanylate cyclase [Deinococcus deserti VCD115]
          Length = 633

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 8/171 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNF 146
                 + Q S  D L+GL N                  ++ ++++  DID+FK  ND+ 
Sbjct: 456 LRLRESLRQQSIRDPLTGLYNRRYLEESFERELHRAQRSDDPIAVIMLDIDHFKHFNDSH 515

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+++  L   L           R GGEEFA    G +  +A   A+ LR  +E++
Sbjct: 516 GHEAGDELLRALGQLLSGCIRAEDVACRYGGEEFAMVFPGMTLDQATRWADQLRHTVEST 575

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
           Q          +++S G+A    H   ++ +I  AD ALY AK+ GRNRV+
Sbjct: 576 QFASRGEALEQVSVSLGVAAFPQHGRHLADLIRAADAALYRAKREGRNRVI 626


>gi|120553001|ref|YP_957352.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120322850|gb|ABM17165.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 565

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 127/298 (42%), Gaps = 53/298 (17%)

Query: 11  IWLCHEKNLESF-SPHTFMIYFSIF--------FSIFIATVIFIANIFLF-----YIGLT 56
           IW+    +L +F +P  ++I  +++        F +   T + + ++ L      +I  +
Sbjct: 261 IWI---SSLAAFATPVAWLIGINVWRRGQILGGFYVLAWTPLLLGHLVLAVSKLGWIPRS 317

Query: 57  PFYGLEYILVENLSLVIISITIS-------------------------LLLGYISGSILK 91
           PF  L       + ++++S  ++                         L L        +
Sbjct: 318 PFTELAPQAGVAVEVILLSFALAYRINMERRRRQQAQEHALDIQRQANLTLESRVRERTE 377

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL  +  ++  +S  D L+ + N   F   L         +  +LS++  DID+FKQ+ND
Sbjct: 378 ELEQANEQLRAISLTDGLTHVANRRRFDEKLETEWNRALRHEHELSLILLDIDHFKQVND 437

Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            FGH VGD  +  L+  L   V  +   V R GGEEFA     +    A  +A  +R  +
Sbjct: 438 RFGHLVGDDCLVALASILSDEVQRSGDLVARYGGEEFAILLPTTDVAGAQQVAERMRLSV 497

Query: 204 ENSQINISSGPS-IHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCF 258
             + +N     S + +TIS G+A            +I RAD+ALY AK  GRNRVV +
Sbjct: 498 ARTPVNSGEHMSPVSLTISLGVATLTPNRQSDCQELIRRADEALYAAKSDGRNRVVVW 555


>gi|89255347|ref|NP_659900.2| two-component sensor histidine kinase protein [Rhizobium etli CFN
           42]
 gi|89213301|gb|AAM54913.2| probable two-component sensor histidine kinase protein [Rhizobium
           etli CFN 42]
          Length = 932

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 11/182 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
              + EL  S  +I Q++  D L+GL N + F   L        S  ++  ++  D+D+F
Sbjct: 459 ARDITELDTSRKKIHQMAFYDSLTGLPNRTLFNERLREMIGDAASAGQRAGVMLIDMDHF 518

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND  GHPVGD+++  ++ ++         V RLGG+EFA          + A +A+ 
Sbjct: 519 KAINDTMGHPVGDELLRQVATRMKKGVRASDTVARLGGDEFAVLLPNVQDNDDLAQIASR 578

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVC 257
           +       +  + S   I ++ S GI+   +       ++  AD A+Y+AK+SGR+    
Sbjct: 579 MLAAF--GERFMLSDREIFVSCSIGISVFPNDGDAPDDLVKYADSAMYLAKRSGRSNFRF 636

Query: 258 FS 259
           +S
Sbjct: 637 YS 638


>gi|237807058|ref|YP_002891498.1| diguanylate cyclase [Tolumonas auensis DSM 9187]
 gi|237499319|gb|ACQ91912.1| diguanylate cyclase [Tolumonas auensis DSM 9187]
          Length = 557

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 70/215 (32%), Positives = 102/215 (47%), Gaps = 20/215 (9%)

Query: 65  LVENLSLVIISITISLLLG-------YISGSILKE---LFISYNRISQLSRIDCLSGLLN 114
           L+  L +  I+  I+LLL         I+  + +E      +  ++ +LS  D L+GL N
Sbjct: 329 LLRYLRIATIASIIALLLAGIATWIYRINRRLTREIAAREAAEQQLRRLSETDALTGLAN 388

Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
             AF   L         Y    SIV  DID FK+IND +GHP GD V+   + +L     
Sbjct: 389 RRAFDQQLHKEFQRFLRYRHTFSIVMIDIDLFKRINDTYGHPAGDHVLTEFAWRLRDHIR 448

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS--IHITISAGIA 225
               + R+GGEEFA     +   EA      L++II  +   +S      + IT S GI+
Sbjct: 449 KTDILARIGGEEFAIMLPETYPWEAKKRTLLLQQIISKTPFKLSDTTDTPVMITASFGIS 508

Query: 226 ERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFS 259
                + I    + RAD ALY AK +GRN+V+ F+
Sbjct: 509 SVAENDLIADAALIRADTALYEAKNNGRNQVILFN 543


>gi|320108085|ref|YP_004183675.1| PAS/PAC sensor-containing diguanylate cyclase [Terriglobus
           saanensis SP1PR4]
 gi|319926606|gb|ADV83681.1| diguanylate cyclase with PAS/PAC sensor [Terriglobus saanensis
           SP1PR4]
          Length = 310

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 67/259 (25%), Positives = 112/259 (43%), Gaps = 24/259 (9%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFL-FYIGLTPFYGLEYILVENLSLVIISITISL 80
           ++P   +    +         + +A I      G+T       +  ++ +LV +  T  +
Sbjct: 42  WTPEEMIAMAPLALIFPEDIPVVVAAIERNLAPGITAMPVAARMRRKDGTLVWMEFTARV 101

Query: 81  LLGYISG---------SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--- 128
           +   I+G           + E  +   ++S L+  D L+G+ N  AF  +L    ++   
Sbjct: 102 VRDPITGEPIETVTSARDISERKLLEEKLSALALTDGLTGIANRRAFDEALEREWKRTLR 161

Query: 129 ----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
               +S++  DID FKQ ND +GH VGD  +  ++  +V V  +   V R GGEE A   
Sbjct: 162 EGSQMSLLLLDIDRFKQFNDQYGHQVGDDCLRTVASLIVGVVRSTDIVARYGGEEIAIIL 221

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIH--ITISAGIAERCHKEP-----ISTII 237
                  A  +A  +R  +E+ QI     P     +T+S GIA    ++        +++
Sbjct: 222 PAPDRSGAMEIAEKVRAAVESLQITHEGNPEGGNLVTVSIGIATALARQGGTIRMPESLL 281

Query: 238 YRADQALYVAKKSGRNRVV 256
             AD ALY AK  GRNRV 
Sbjct: 282 LAADNALYKAKHEGRNRVA 300


>gi|323529056|ref|YP_004231208.1| PAS/PAC sensor-containing diguanylate cyclase [Burkholderia sp.
           CCGE1001]
 gi|323386058|gb|ADX58148.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1001]
          Length = 312

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 101/201 (50%), Gaps = 11/201 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG- 123
           L  +  +V + +TIS +       + +E   +  ++ + +  D L+G+ N   F + L  
Sbjct: 113 LTRDREVVAVCVTISDVTH--VSIVQREREEAVAKLQEYADRDGLTGIANRRYFEARLQD 170

Query: 124 ------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   +S++ FD+D+FK+IND FGH VGD V+  ++ ++  V       GR GG
Sbjct: 171 EYTRWQRYGGDMSVLLFDLDHFKKINDQFGHGVGDTVLRVMAQRVAGVVRAQDTFGRFGG 230

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STI 236
           EEFA     +  ++A  +A  +R  I ++ + +  G S+ +T S G A      P    +
Sbjct: 231 EEFALLLPCTPLEDAMRVAEKIRCTIADTPVEV-QGTSVPVTASVGGAAARPGLPAYEVL 289

Query: 237 IYRADQALYVAKKSGRNRVVC 257
           I  AD ALY AK+ GRNR V 
Sbjct: 290 INEADAALYSAKRQGRNRSVA 310


>gi|56477015|ref|YP_158604.1| hypothetical protein ebA2811 [Aromatoleum aromaticum EbN1]
 gi|56313058|emb|CAI07703.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 813

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S +     +   I  L+  D L+GL N  +  + L           ++L+++F D+D FK
Sbjct: 368 SDITARKRAEADIQHLAYHDTLTGLANRFSLTARLQLSVAEARRNGQRLAVMFLDLDRFK 427

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
            IND+ GHPVGD+++  ++ +L         V RLGG+EF     G     +   +A  L
Sbjct: 428 HINDSLGHPVGDELLKQVARRLRDAVRETDTVARLGGDEFVVVLQGIGGAHDVTHVAAKL 487

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
             + + S         +H T S GI+         + ++  AD A+Y AK +GR +   +
Sbjct: 488 --LAQLSAPYCVDTTELHTTASIGISLFPDDSADPAALMRNADTAMYHAKAAGRAKFQFY 545

Query: 259 SDIENNTC 266
           +D  N   
Sbjct: 546 TDEMNRAA 553


>gi|188581672|ref|YP_001925117.1| diguanylate cyclase [Methylobacterium populi BJ001]
 gi|179345170|gb|ACB80582.1| diguanylate cyclase [Methylobacterium populi BJ001]
          Length = 532

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 57/194 (29%), Positives = 90/194 (46%), Gaps = 8/194 (4%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------S 124
           +++   +++LL  + G  L+        +++L+  D L+GL N   F  +          
Sbjct: 313 ILVLCGLTILLSLLFGRELRRSADMQAELARLAGTDLLTGLPNRRRFEEAFEQAAKASRR 372

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAA 183
            +  L+++  D D+FK+ ND  GH VGD V+  L+  L      P     R+GGEEFA  
Sbjct: 373 ADRPLALLVIDADHFKRYNDRHGHAVGDAVLKSLAKSLTESLRRPNDLAARVGGEEFAVL 432

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              +    AA +A  +   +    +  +      IT+S G+A          +  RAD A
Sbjct: 433 LPDTDRAGAARIAEAIHAAVAGLAVPAAGIDPGSITVSIGLAVSAGDRATEDLYRRADAA 492

Query: 244 LYVAKKSGRNRVVC 257
           LYVAK+SGRNR  C
Sbjct: 493 LYVAKESGRNRTCC 506


>gi|78222207|ref|YP_383954.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter metallireducens GS-15]
 gi|78193462|gb|ABB31229.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter metallireducens GS-15]
          Length = 739

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 87/188 (46%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             + E   +  ++ +L+  D L+GL N   F+  L         Y  +++++F D+D FK
Sbjct: 291 RDITERKHAEEQLYRLAHHDTLTGLPNRILFMDRLQQAKALANRYRYQVAVLFLDLDRFK 350

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            IND  GHPVGD ++  ++ ++         V R+GG+EF    +     ++   +   +
Sbjct: 351 IINDTLGHPVGDHLLQQVAHRIAGCVREVDTVARIGGDEFTIILVNVDTVEDVKRMGQKI 410

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            K +  +  NI     + +T S GI+      + +  ++ +AD A+Y  K  GRN V  +
Sbjct: 411 LKTLA-APFNI-DTHELFVTASIGISLFPSDGDNLDQLVKKADIAMYCVKGEGRNNVQFY 468

Query: 259 SDIENNTC 266
           S   +   
Sbjct: 469 SPQMDANA 476


>gi|310823687|ref|YP_003956045.1| response regulator/ggdef domain-containing protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396759|gb|ADO74218.1| Response regulator/GGDEF domain protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 348

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 13/183 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           KEL      +  LSR D L+ L N   F   L         Y   LS+V  DID+FK+IN
Sbjct: 166 KELARKREELLTLSRTDPLTSLSNRRYFEERLAEEFARARRYRSPLSLVMLDIDHFKRIN 225

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHP GD+V+  ++            + R GGEE  A    +S  +A      +R+ I
Sbjct: 226 DTYGHPFGDEVLRAVALVSRTRLREVDLLARYGGEELIALLPETSPADALRACERVREAI 285

Query: 204 ENSQINISS----GPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           E+ +++  +       +  T S G+A       +    ++  AD+ LY AK++GRNRV  
Sbjct: 286 ESLRLDYRASDGTSQKVSCTASLGLASLPSVPLQTAEDLLRAADECLYKAKEAGRNRVRQ 345

Query: 258 FSD 260
           + +
Sbjct: 346 YEE 348


>gi|317154951|ref|YP_004122999.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
 gi|316945202|gb|ADU64253.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
          Length = 498

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 87/185 (47%), Gaps = 17/185 (9%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           L   +  I KE+ +  +R       D L+ + N  +F   L         YN  LS++  
Sbjct: 310 LALRNALIFKEVKLRADR-------DGLTRIYNRHSFDERLIYEIKRRRRYNHDLSLLMV 362

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D+FKQ+ND +GH  GD V+  + + L   F T     R GGEEF      +SE+ A  
Sbjct: 363 DLDHFKQVNDTYGHKAGDMVLRKVGEILTETFRTTDLAARYGGEEFVVLLPHTSEEAAWK 422

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGR 252
           LA  +R+ I+        G    +T S G+A            ++ +AD+ALY AK +GR
Sbjct: 423 LAERIRESIQGCVFRF-DGHEFSVTASIGVASVEAGALTRDDDLLIKADKALYKAKNNGR 481

Query: 253 NRVVC 257
           N VV 
Sbjct: 482 NMVVI 486


>gi|78356877|ref|YP_388326.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219282|gb|ABB38631.1| diguanylate cyclase (GGDEF domain) [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 525

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 64/172 (37%), Positives = 89/172 (51%), Gaps = 10/172 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +  +   +  D L+ L N   F + L       G Y+  L+++  DIDYFKQIND FGH 
Sbjct: 344 FREMRLQADHDGLTQLHNRRHFDTRLREELDRHGRYSMPLTLMMLDIDYFKQINDRFGHQ 403

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  L+  L     T  +  R GGEEF A    + EQ+A +LA  LRK IE S++ 
Sbjct: 404 AGDAVLRELASVLRETIRTTDYCARYGGEEFVAILPHTDEQQARVLAERLRKNIE-SRVF 462

Query: 210 ISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFS 259
              G +I  T+S G+         P   ++  AD ALY+AK +GRN V  F+
Sbjct: 463 RHHGKTIQATVSIGLTGFKPGALTPRDELVREADAALYLAKANGRNVVCTFA 514


>gi|189426487|ref|YP_001953664.1| diguanylate cyclase [Geobacter lovleyi SZ]
 gi|189422746|gb|ACD97144.1| diguanylate cyclase [Geobacter lovleyi SZ]
          Length = 557

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 64/216 (29%), Positives = 104/216 (48%), Gaps = 14/216 (6%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112
           I  T  YG   IL+  +S V+I +   L       ++ +E   +   +  ++  D L+GL
Sbjct: 335 IVRTKLYGFRKILLL-ISSVLIVLLAFLARQVALNALQREETAAL--VHAMAFRDALTGL 391

Query: 113 LNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N       L            K++++F D+D+FK +ND  GH VGD+++  +S +L   
Sbjct: 392 PNRRLLEDRLNQSIASADRNAGKVAVLFLDLDHFKAVNDTLGHEVGDQLLKQVSGRLQEA 451

Query: 166 FGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                 V RLGG+EF    L  +S Q+   +A+ + + I  S+    +G    +  S GI
Sbjct: 452 VRKSDTVARLGGDEFILLLLNITSHQDVDSVADKVIQAI--SRPFSIAGQQAQVGTSIGI 509

Query: 225 AERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           A          +++  AD+ALY AK+SGRNR V F+
Sbjct: 510 ALYPEDCTDPESLVAFADKALYKAKQSGRNRYVWFA 545


>gi|160873548|ref|YP_001552864.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160859070|gb|ABX47604.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           baltica OS195]
 gi|315265778|gb|ADT92631.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           baltica OS678]
          Length = 621

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 11/182 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL     ++++ S ID L+G+ N SAF   L             ++++  DID FK I
Sbjct: 441 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLIAESRISRRQETPIALLMLDIDRFKLI 500

Query: 143 NDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD+ +  ++  L          V R GGEEFA     ++E  A  +A  +R 
Sbjct: 501 NDRFGHLAGDEALRTIAQTLQQHLKRPTDLVSRYGGEEFAIILPNTAEDGALQVAETIRD 560

Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +       G +I +TIS G++     + +  + ++ +AD+ALY AK  GRN+V  FS
Sbjct: 561 AVASLHFEW-EGVAIPLTISIGVSADIVTNDQHSTKLLEQADKALYQAKNGGRNQVSLFS 619

Query: 260 DI 261
            +
Sbjct: 620 SV 621


>gi|46201308|ref|ZP_00055321.2| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 554

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 87/177 (49%), Gaps = 9/177 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
            + E       + +L+  D L+G+ N   F+            +   +  +  DID+FK+
Sbjct: 378 DITERKRMEAELRRLATTDVLTGIFNRRHFMEMARNEVDRARRHGRPMVALMLDIDHFKR 437

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GHPVGD  I  L+D    +      +GRLGGEEFA     +    A ++A  LR 
Sbjct: 438 INDTYGHPVGDVAIKALADVCTEIVRHEDVLGRLGGEEFAIVLTETDLDGALLVAERLRL 497

Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
            +   +I    G  +  T S G+AER      I +++ RAD ALY AK+SGRN+V  
Sbjct: 498 AVAAIRIPAEQGI-VAFTTSIGVAERLETDTTIDSMLSRADMALYSAKRSGRNKVAV 553


>gi|327193499|gb|EGE60393.1| two-component sensor histidine kinase protein [Rhizobium etli
           CNPAF512]
          Length = 932

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 11/182 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
              + EL  S  +I Q++  D L+GL N + F   L        S  ++  ++  D+D+F
Sbjct: 459 ARDITELDTSRKKIHQMAFYDSLTGLPNRTLFNERLREMIGDAASAGQRAGVMLIDMDHF 518

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND  GHPVGD+++  ++ ++         V RLGG+EFA          + A +A+ 
Sbjct: 519 KAINDTMGHPVGDELLRQVATRMKKGVRASDTVARLGGDEFAVLLPNVQDNDDLAQIASR 578

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVC 257
           +       +  + S   I ++ S GI+   +       ++  AD A+Y+AK+SGR+    
Sbjct: 579 MLAAF--GERFMLSDREIFVSCSIGISVFPNDGDAPDDLVKYADSAMYLAKRSGRSNFRF 636

Query: 258 FS 259
           +S
Sbjct: 637 YS 638


>gi|190894121|ref|YP_001984415.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
 gi|190699782|gb|ACE93865.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
          Length = 932

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 11/182 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
              + EL  S  +I Q++  D L+GL N + F   L        S  ++  ++  D+D+F
Sbjct: 459 ARDITELDTSRKKIHQMAFYDSLTGLPNRTLFNERLREMIGDAASAGQRAGVMLIDMDHF 518

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND  GHPVGD+++  ++ ++         V RLGG+EFA          + A +A+ 
Sbjct: 519 KAINDTMGHPVGDELLRQVATRMKKGVRASDTVARLGGDEFAVLLPNVQDNDDLAQIASR 578

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVC 257
           +       +  + S   I ++ S GI+   +       ++  AD A+Y+AK+SGR+    
Sbjct: 579 MLAAF--GERFMLSDREIFVSCSIGISVFPNDGDAPDDLVKYADSAMYLAKRSGRSNFRF 636

Query: 258 FS 259
           +S
Sbjct: 637 YS 638


>gi|92117845|ref|YP_577574.1| diguanylate cyclase [Nitrobacter hamburgensis X14]
 gi|91800739|gb|ABE63114.1| diguanylate cyclase [Nitrobacter hamburgensis X14]
          Length = 354

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 63/190 (33%), Positives = 96/190 (50%), Gaps = 9/190 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDID 137
           IS   +  L  S   I   S  D L+GL N   F  ++             LS++ FDID
Sbjct: 158 ISKVEINNLQHSLEAIRAESMTDPLTGLGNRKYFDRAVEDAVALAIGEGGPLSLLLFDID 217

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK  NDN+GH  GD+V+  ++  L           R GGEEFA     ++  +A  +A+
Sbjct: 218 HFKSFNDNYGHLTGDQVLRLVAMSLKQTIKGQDITARYGGEEFAVVLPNTALSQALTVAD 277

Query: 198 DLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +R+ +   ++   S   I   +TIS G++   H +   ++I RAD  LY AK++GRNRV
Sbjct: 278 HIRRAVMAKELKKKSTGEILGRVTISVGVSLLRHGDTPDSLIERADSCLYAAKRNGRNRV 337

Query: 256 VCFSDIENNT 265
           +C +D E +T
Sbjct: 338 ICEADPECST 347


>gi|39996743|ref|NP_952694.1| GGDEF/response regulator receiver domain-containing protein
           [Geobacter sulfurreducens PCA]
 gi|39983624|gb|AAR35017.1| GGDEF/response regulator receiver domain protein [Geobacter
           sulfurreducens PCA]
 gi|307634892|gb|ADI84478.2| response receiver-modulated diguanylate cyclase [Geobacter
           sulfurreducens KN400]
          Length = 316

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 15/195 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           +T+ L+       +   L  S   +  L+  D L+G+ N       L         Y   
Sbjct: 119 LTVRLMTARRIIDLESSLKQSMEEVRLLTMRDPLTGIYNRRYLEDRLHQEVKRTFRYERP 178

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGS 187
           +S+V FDID+FK++ND +GH VGD+V+   ++ +         +  R GGEEF      +
Sbjct: 179 ISVVMFDIDHFKRVNDTWGHLVGDQVLKACAESVRSGVRENIDWPVRYGGEEFVVVLPET 238

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST------IIYRAD 241
               A I+A  LR+ I   Q ++  G  + +T S G+A     +          ++ RAD
Sbjct: 239 DMAGAVIVAERLRQRIALIQTSVGDGA-VTVTASFGVASFTPPDQKEDLSIGEVLLERAD 297

Query: 242 QALYVAKKSGRNRVV 256
           + LY AK  GRNRV 
Sbjct: 298 RCLYRAKGEGRNRVC 312


>gi|16767795|ref|NP_463410.1| hypothetical protein STM4551 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16423119|gb|AAL23369.1| putative diguanylate cyclase/phosphodiesterase domain 1 containing
           protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
          Length = 354

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 75/275 (27%), Positives = 125/275 (45%), Gaps = 22/275 (8%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58
           F  IW  H      +   + F  +  S+   +FI ++ F ANI  F +  L P       
Sbjct: 78  FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 137

Query: 59  ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112
                GL  + +  L +V I+I   +   Y   +  ++ +L      ++ LS +D L+GL
Sbjct: 138 NGNEQGLRILYLLTLPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 197

Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +     S    ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 198 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 257

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      +  Q+A   A  +R+ + + +I      S+  ++T+S GIA 
Sbjct: 258 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 317

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                 I   I +AD+ALY AK  GRN ++   D+
Sbjct: 318 LT-DRNIGDAIEKADKALYEAKHLGRNHILVSDDM 351


>gi|256829265|ref|YP_003157993.1| response regulator receiver modulated diguanylate cyclase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578441|gb|ACU89577.1| response regulator receiver modulated diguanylate cyclase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 335

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 84/177 (47%), Gaps = 7/177 (3%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFK 140
            I ++L  S  R  +LS  D L+GL N   F             YN  LS+   DID FK
Sbjct: 158 RIEEDLRRSEMRYKELSLTDELTGLYNARHFFRQVQAEVERATRYNSPLSLCVIDIDKFK 217

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           + ND +GH  GD V+A L   +  +        R GGEEF      +  +EAA +A  +R
Sbjct: 218 RYNDTYGHLCGDAVLAELGRLIQKLIRDADSAYRYGGEEFIIVLPETPREEAARVAERIR 277

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                      +   +H+++S G+   C  E +S ++ RADQ +Y AKK GRN  VC
Sbjct: 278 TTFFEHSFYPKNAQGVHVSLSLGVTSYCPGESVSDLVDRADQNMYAAKKCGRNTTVC 334


>gi|194447645|ref|YP_002048574.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194405949|gb|ACF66168.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
          Length = 354

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 75/275 (27%), Positives = 125/275 (45%), Gaps = 22/275 (8%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58
           F  IW  H      +   + F  +  S+   +FI ++ F ANI  F +  L P       
Sbjct: 78  FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 137

Query: 59  ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112
                GL  + +  L +V I+I   +   Y   +  ++ +L      ++ LS +D L+GL
Sbjct: 138 NGNEQGLRILYLLALPMVGIAIQHVIQKSYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 197

Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +     S    ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 198 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 257

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      +  Q+A   A  +R+ + + +I      S+  ++T+S GIA 
Sbjct: 258 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 317

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                 I   I +AD+ALY AK  GRN ++   D+
Sbjct: 318 LT-DRNIGDAIEKADKALYEAKHLGRNHILVSDDM 351


>gi|172056241|ref|YP_001812701.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15]
 gi|171988762|gb|ACB59684.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15]
          Length = 366

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 114/247 (46%), Gaps = 19/247 (7%)

Query: 32  SIFFSIFIATVIFIANI-------FLFYIGLTPFYGLEYI-LVENLSLVIISITIS---- 79
           +I   + I T+  +          F   IG+   Y L  I L+ N     I I+++    
Sbjct: 112 TIVIGVLILTIAVVRRYIRLTFWNFELMIGIGIVYSLPGIYLLTNSWTTFIEISLAYIFF 171

Query: 80  -LLLGYISGSILKELFISYNRISQ---LSRIDCLSGLLNHSAFISSL---GSYNEKLSIV 132
            L+ G+++  +L EL   +  I     L+  D L+GL N      SL   GS  E  S++
Sbjct: 172 NLIAGFVTYHLLTELRRHFENIQYQQKLAMTDALTGLANRRRLDDSLSLVGSAEEGYSLI 231

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK +ND +GH  GD V+  L   L  +      VGR GGEEF      +S  +A
Sbjct: 232 LIDIDFFKHVNDTYGHDAGDDVLRQLGTTLASLARPDDLVGRYGGEEFLIILPNTSLADA 291

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             +A   R  +  +    ++ P + ITIS GIA           + +AD+ALY +K SGR
Sbjct: 292 KSIAELARTTVARNLFPTTAVPDLQITISLGIAHSSSSHTSLEALQQADKALYHSKDSGR 351

Query: 253 NRVVCFS 259
           NR   ++
Sbjct: 352 NRSTTYT 358


>gi|148255364|ref|YP_001239949.1| hypothetical protein BBta_3973 [Bradyrhizobium sp. BTAi1]
 gi|146407537|gb|ABQ36043.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1]
          Length = 355

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 62/179 (34%), Positives = 90/179 (50%), Gaps = 9/179 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
           L  S   I   S  D L+GL N   F   +        + N+ LS++ FDID+FK  ND+
Sbjct: 167 LQQSLEAIRAESLTDPLTGLGNRKYFDRMIEMAVEGGLTSNQPLSLLMFDIDHFKSFNDS 226

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GD+V+  +   L           R GGEEFA     +  ++A  +A+ +R+ +  
Sbjct: 227 FGHLTGDQVLRLVGMSLKNAIKGQDIAARYGGEEFAVVLPNTPLRQALTVADQIRRAVTA 286

Query: 206 SQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            ++   S   I   +TIS G++     +    +I RAD  LY AK+SGRNRV+C SD E
Sbjct: 287 RELKKKSTGEILGRVTISVGVSMLRPGDDTDALIERADACLYAAKRSGRNRVICESDPE 345


>gi|298504600|gb|ADI83323.1| sensor diguanylate cyclase/phosphodiesterase, PAS, PAS and PAC
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 792

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 12/185 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFK 140
            + +      ++   +  D L+GL N +     LG             + ++F D+D FK
Sbjct: 316 DISDQRRYEEQLVYQATHDPLTGLPNRNLLQDRLGQALALESFRRRNPIGVMFLDLDNFK 375

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
           +IND  GH VGD ++  ++++L         V RLGG+E+        E  +   +A  L
Sbjct: 376 KINDTLGHTVGDMLLKAVANRLRNCVRGGDTVSRLGGDEYILILPNVKEMHDVTTVAKKL 435

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   S   +  G  ++IT S GI       + +  ++  AD A+Y AK+ G+N    +
Sbjct: 436 LGVF--STPFLLMGHELYITASIGITLFPSDGDTVDALLKNADAAMYHAKEQGKNNYQFY 493

Query: 259 SDIEN 263
           S+  N
Sbjct: 494 SEEMN 498


>gi|39995582|ref|NP_951533.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
 gi|39982345|gb|AAR33806.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
          Length = 792

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 12/185 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFK 140
            + +      ++   +  D L+GL N +     LG             + ++F D+D FK
Sbjct: 316 DISDQRRYEEQLVYQATHDPLTGLPNRNLLQDRLGQALALESFRRRNPIGVMFLDLDNFK 375

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
           +IND  GH VGD ++  ++++L         V RLGG+E+        E  +   +A  L
Sbjct: 376 KINDTLGHTVGDMLLKAVANRLRNCVRGGDTVSRLGGDEYILILPNVKEMHDVTTVAKKL 435

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   S   +  G  ++IT S GI       + +  ++  AD A+Y AK+ G+N    +
Sbjct: 436 LGVF--STPFLLMGHELYITASIGITLFPSDGDTVDALLKNADAAMYHAKEQGKNNYQFY 493

Query: 259 SDIEN 263
           S+  N
Sbjct: 494 SEEMN 498


>gi|307824193|ref|ZP_07654419.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylobacter tundripaludum SV96]
 gi|307734573|gb|EFO05424.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylobacter tundripaludum SV96]
          Length = 856

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 80/184 (43%), Gaps = 10/184 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + E   +   I  L+  D L+GL N +     L          N  L+++F D+D+FK
Sbjct: 413 SDITERKRAEEHIHYLANFDWLTGLPNRTQLNDHLKYALSLAKRSNGHLALMFLDLDHFK 472

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND+ GH +GD ++  L+ +L         V RLGG+EF     G     AA +A  L 
Sbjct: 473 DINDSLGHSIGDALLIKLAKRLRAALREEDTVTRLGGDEFILLLPGVDAIGAAHVAQKLL 532

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I  S         + +T S GIA      E +  +   AD A+Y AK+ GR     F+
Sbjct: 533 DTIAES--YRIEHYDLILTASIGIALYPEDGEDLEALSKSADTAMYRAKQEGRQCYRFFT 590

Query: 260 DIEN 263
               
Sbjct: 591 QEMQ 594


>gi|291614045|ref|YP_003524202.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291584157|gb|ADE11815.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 694

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 13/215 (6%)

Query: 64  ILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  + LS+  I      +  Y+ + + + E   +   I  L+  D L+ L N       L
Sbjct: 220 IYPKWLSITAIKDADGNVTNYVGTHTDISERKTAEEEIRNLAFYDPLTQLPNRRLLQDRL 279

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                      +  +++F D+D FK IND  GH  GD ++  ++ +L         V R+
Sbjct: 280 QHAMSSTERNRKGGALLFLDLDNFKSINDTLGHTAGDNLLQQVAQRLTSCVREDDTVSRI 339

Query: 176 GGEEFAAAALGSSEQ--EAAILANDLRKII--ENSQINISSGPSIHITISAGIAERCHKE 231
           GG+EF       S +  EAA  A  + + I  E +Q     G  ++ T S GI       
Sbjct: 340 GGDEFVVMLEYLSNEVLEAAAQAETIGEKIIAELNQPYYLGGQELYNTPSIGITLFDDNR 399

Query: 232 P-ISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                +  +AD A+Y AKKSGRN +  F      +
Sbjct: 400 NGYEDLFKQADIAMYQAKKSGRNTLRFFDPKMQGS 434


>gi|304311555|ref|YP_003811153.1| hypothetical protein HDN1F_19250 [gamma proteobacterium HdN1]
 gi|301797288|emb|CBL45508.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 597

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 83/171 (48%), Gaps = 8/171 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +  +    +  D L+GL N  A+                 LS+   DID+FK+IND
Sbjct: 425 ELKQALEQQQSKAMTDALTGLPNRQAYDDYILREFSRWKRRGHALSMAVIDIDFFKRIND 484

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GDKV+  ++ ++     +  FV R GGEEF A    + +         +R+ IE
Sbjct: 485 TLGHLRGDKVLKLVAREIQDCVRSEDFVARYGGEEFVALLPDTDQDAGRTAMEKVRQHIE 544

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               N  +   + +T+S G+A+    + I ++  RADQALY AK  GRNRV
Sbjct: 545 VCPFNFHN-QRVVVTVSIGVAQFQEGDSIESVFDRADQALYRAKGGGRNRV 594


>gi|192361381|ref|YP_001983020.1| response regulator [Cellvibrio japonicus Ueda107]
 gi|190687546|gb|ACE85224.1| response regulator [Cellvibrio japonicus Ueda107]
          Length = 587

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 103/197 (52%), Gaps = 11/197 (5%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           +T ++        + ++L+ S+ R+  L+  D L+GL N   F  SL          +++
Sbjct: 113 LTRAITHARARHQLERQLYDSHQRLRSLAENDSLTGLANRYYFDESLRAAIARAKRQHDQ 172

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+++F D+D FK IND+ GH VGD+V+  ++ +L+ V      V RLGG+EFA  A    
Sbjct: 173 LALLFLDLDNFKLINDSLGHVVGDEVLKEVAQRLLNVVRAGDVVCRLGGDEFAILAHHFD 232

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCH-KEPISTIIYRADQALYV 246
            +E+  ++   ++I+++ +  I  G + H I+ S GIA         S ++  AD A+Y 
Sbjct: 233 TEES--ISQLAQRILDDLRSPIVIGNTEHCISTSIGIATYPDAGNSASDLLKAADMAMYR 290

Query: 247 AKKSGRNRVVCFSDIEN 263
           AK+ GRN    FS    
Sbjct: 291 AKQDGRNNFQFFSPAMQ 307


>gi|115525386|ref|YP_782297.1| response regulator PleD [Rhodopseudomonas palustris BisA53]
 gi|115519333|gb|ABJ07317.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris BisA53]
          Length = 457

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 82/165 (49%), Gaps = 9/165 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N     S L        +    L+++  DIDYFK+IND++GH  GD V
Sbjct: 290 EMAITDGLTGLHNRRYMESHLATLAEQAGARGRPLALMMLDIDYFKKINDSYGHDAGDDV 349

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG- 213
           +   + ++           R GGEEF      +    A ++A  LR+ I      I  G 
Sbjct: 350 LREFAVRIKKSIRGIDLACRYGGEEFVVVMPETDAHVAGLVAERLRRAIAGEPFAIEKGA 409

Query: 214 PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             I +TIS G++      EP++ ++ RAD ALY AK  GRNRVV 
Sbjct: 410 RRIEVTISIGLSTLEKKGEPVADLLKRADVALYRAKHDGRNRVVA 454


>gi|170701034|ref|ZP_02892013.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
 gi|170134056|gb|EDT02405.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
          Length = 492

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 10/211 (4%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           +    +      +LV       + +  + G+ L+    + + +  L+R D L+GL N  +
Sbjct: 278 YAAWRHRATTIAALVATFGAAFIAVSVMLGTQLRRRMRAESELVLLARTDGLTGLNNRRS 337

Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
           F   L     +        S++F D+D FK  ND +GH  GD  +A ++  +      P 
Sbjct: 338 FGEVLDREWRRARRARSVFSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPA 397

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               R GGEEF      + E  AA +A  +R  I+   +  +     H+T S G+A    
Sbjct: 398 DTAARYGGEEFVVLLPDTPETGAAQIAERIRAAIDELALEHAGSEHGHVTASIGLASWTP 457

Query: 230 KEPIS--TIIYRADQALYVAKKSGRNRVVCF 258
           ++     ++I  AD+ALY AK +GRN+V  F
Sbjct: 458 EDDEEAGSVIKAADEALYYAKATGRNKVAAF 488


>gi|114321658|ref|YP_743341.1| diguanylate cyclase with PAS/PAC sensor [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114228052|gb|ABI57851.1| diguanylate cyclase with PAS/PAC sensor [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 419

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 55/181 (30%), Positives = 83/181 (45%), Gaps = 11/181 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDY 138
           +G  + E       + + +  D L+GL N  +F             Y   LS++ FD+D+
Sbjct: 242 TGKDITERVRMEEELKRAATTDALTGLANRLSFEQLLERDYERCRRYGGALSLLMFDLDH 301

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND  GH  GD V+  L+  ++    T   V R GGEEF      +    A  LA  
Sbjct: 302 FKAVNDAHGHEAGDAVLQALAGLVLANVRTADTVARWGGEEFMVLLPETPLAAAGELAEK 361

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           LR+ +   +    +     +T S G+      +   T++ RAD+ALY AK  GR+RV C 
Sbjct: 362 LRERVAAHRFPHGA----PVTASFGVCALRDDDTCRTLVRRADEALYRAKHLGRDRVECL 417

Query: 259 S 259
           S
Sbjct: 418 S 418


>gi|167629225|ref|YP_001679724.1| hypothetical protein HM1_0848 [Heliobacterium modesticaldum Ice1]
 gi|167591965|gb|ABZ83713.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
          Length = 999

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 101/223 (45%), Gaps = 21/223 (9%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
           +  +   Y G T F+  +   V    L + + TIS +             I +NR  +LS
Sbjct: 787 VVGVLHLYSGATGFFNDQTARVVRSLLALAAPTISNM-----------RLIDHNR--RLS 833

Query: 105 RIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            ID L+GL N      +L               ++  DID FK  ND FGH  GDK +  
Sbjct: 834 LIDPLTGLHNRRYLEQTLENLLVRSRETERPFCLIMADIDQFKGFNDTFGHDAGDKALRM 893

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           ++  +           R GGEE     +G S++ A  +A+ +RK IE + I I  G   +
Sbjct: 894 VAANVRNCLREEDIAVRFGGEEITVILMGVSKELAVTIADRIRKRIEQTPIEIGDGQLQY 953

Query: 218 ITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           IT+S G++      + +  +I RAD ALY AK+ G+NRV  F 
Sbjct: 954 ITLSMGVSAFPEDGKTLEKLIQRADLALYEAKRLGKNRVAAFE 996


>gi|104780809|ref|YP_607307.1| sensory box protein [Pseudomonas entomophila L48]
 gi|95109796|emb|CAK14501.1| putative sensory box/GGDEF domain/EAL domain protein [Pseudomonas
           entomophila L48]
          Length = 1124

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 63/217 (29%), Positives = 101/217 (46%), Gaps = 17/217 (7%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL- 122
           IL   +S+  IS+  +  L  ++   +  L  +  +I  L+  D L+ L N +  +  L 
Sbjct: 648 ILTVEVSVEPISLNETDCL-LLTARDVSLLKNAQAQIRHLAYHDPLTNLPNRALLMDRLS 706

Query: 123 ------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                   +N + +++F D+D+FK IND+ GHPVGD V+  ++ +L         V RLG
Sbjct: 707 QQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLG 766

Query: 177 GEEFAAAALGSS------EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCH 229
           G+EF     G        E +   LA+ LR+++   +     G  + +T S G+A    H
Sbjct: 767 GDEFVVLLSGLEGSRELVESKVRELADTLRELLA--EPMSLDGQRLQVTPSIGVALIPDH 824

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
               + ++ RAD ALY AK SGRN    F        
Sbjct: 825 GATPADLLKRADIALYRAKDSGRNTTQLFHSTMQKAA 861


>gi|34496267|ref|NP_900482.1| hypothetical protein CV_0812 [Chromobacterium violaceum ATCC 12472]
 gi|34330290|gb|AAQ58487.2| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 383

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 62/176 (35%), Positives = 95/176 (53%), Gaps = 9/176 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
           +I  +      ++ +L+  D L+ L N   FI            +  ++S++  D+D+FK
Sbjct: 200 AIALQRDGHEKQLYRLATQDGLTELNNRRQFIELADREIERSRRHGSRMSVLMMDLDHFK 259

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND++GH VGD+VI   S     V       GRLGGEEFAA    +   +A  +A  LR
Sbjct: 260 DINDHYGHAVGDEVIRHFSQVCREVLRASDLCGRLGGEEFAAVLPDTGLDDARQVAERLR 319

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
            +  +++++  SG S+  T+S G+AER   E  I  ++ RAD+ LY AK+ GRNRV
Sbjct: 320 SLASSARLSAVSG-SLGYTVSIGVAERHADETDIDEVLGRADKQLYQAKRDGRNRV 374


>gi|206562608|ref|YP_002233371.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
 gi|198038648|emb|CAR54608.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
          Length = 510

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 61/199 (30%), Positives = 89/199 (44%), Gaps = 15/199 (7%)

Query: 72  VIISITISLLLGYIS------GSILKELFISYNRISQLSRIDCLSGLLNHSAFI------ 119
           V   + +SL   +I+         LK    + +++ +L+  D L+GL N   F       
Sbjct: 302 VWTVVLMSLFTAFIAWGSLALSRELKRRQDAESKLYRLAHTDSLTGLDNRGTFDAVLAKE 361

Query: 120 -SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGG 177
                     LS++F D+D+FK  ND +GHP GD V+  ++  L          V R GG
Sbjct: 362 AQRASRSGRPLSVLFVDVDHFKAFNDYYGHPAGDDVLRQVAQSLSRCLRRDSDHVARYGG 421

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTI 236
           EEF      +    AA +A  +R+ I    I     P   +T S G A         +T+
Sbjct: 422 EEFVVTLPDTDAPGAATVAEGIRRAIAGLGIEHVKSPYGRVTASIGTATAADGRMNAATL 481

Query: 237 IYRADQALYVAKKSGRNRV 255
           + RAD+ALY AK  GRNRV
Sbjct: 482 LRRADEALYRAKSGGRNRV 500


>gi|121998494|ref|YP_001003281.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Halorhodospira halophila SL1]
 gi|121589899|gb|ABM62479.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Halorhodospira halophila SL1]
          Length = 749

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 10/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +L  +++R   L+  D L+GL N S F   L         +  ++ ++F D+D+FK
Sbjct: 301 SDITQLKDAHSRSEYLANHDPLTGLPNRSLFQDRLQQAIAQTQRHEGQVGLMFLDLDHFK 360

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH VGD+++  ++++L  +      V R+GG+EF         +E   +A  L 
Sbjct: 361 TINDTLGHEVGDELLVQVAERLGELVRDVDTVARIGGDEFTVVLTDCDPEEVGSIAQRLV 420

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +  +   +  G  +  T SAG+A      E + T+   AD A+Y AK+ GRNR+  
Sbjct: 421 EGLGGT--FVVDGRELQATPSAGLALYPRDGEDVHTLCKAADMAMYRAKEDGRNRLRL 476


>gi|222085608|ref|YP_002544138.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221723056|gb|ACM26212.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 458

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 87/175 (49%), Gaps = 9/175 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
            L  S     +L+  D L+GL N     + L        +    LSI+  DID FK +ND
Sbjct: 281 RLRASVQHTIELAVTDALTGLNNRRYLDNHLKILFNRSLARGRPLSILITDIDRFKLVND 340

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+   + ++           R GGEEF      +  + AA +A  LR  +E
Sbjct: 341 TYGHDAGDEVLKEFAARIRSTVRGADLACRYGGEEFVVVMPDTPPEVAAAVAERLRAAVE 400

Query: 205 NSQINI-SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
            + + +  +G +++IT S GI+ R    E    ++ +AD ALY AKK+GRNRVV 
Sbjct: 401 TAPVTLREAGAALNITASFGISSRLESIETPEQLMKQADLALYEAKKAGRNRVVA 455


>gi|116251496|ref|YP_767334.1| response regulator PleD [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256144|emb|CAK07225.1| putative two-component response regulator with GGDEF sensory box
           protein [Rhizobium leguminosarum bv. viciae 3841]
          Length = 457

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 88/175 (50%), Gaps = 9/175 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
            L  S  +  +L+  D L+GL N     + L        +    LS++  DID FK +ND
Sbjct: 280 RLRASVKQTIELAVTDPLTGLYNRRYLDNHLNVLFNRSMARGRPLSVLITDIDRFKHVND 339

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+   S+++           R GGEEF      +S + AA +A  LR  IE
Sbjct: 340 TYGHDGGDEVLREFSNRVRSTIRGADLACRYGGEEFVVVMPDTSPEIAAAVAERLRAAIE 399

Query: 205 NSQINI-SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           N+   +  +G ++++T S GIA R         ++ +AD ALY AK +GRNRVV 
Sbjct: 400 NAPFMLKHAGEALNVTASFGIASRITSVLTPDQLMKQADLALYEAKNTGRNRVVA 454


>gi|149910444|ref|ZP_01899085.1| sensory box/GGDEF family protein [Moritella sp. PE36]
 gi|149806503|gb|EDM66474.1| sensory box/GGDEF family protein [Moritella sp. PE36]
          Length = 620

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 64/190 (33%), Positives = 100/190 (52%), Gaps = 11/190 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFK 140
            I  EL  +  +  +LS ID L+ + N   F S L  Y        +++S++F D+D FK
Sbjct: 420 RIEHELEQAIEKFDELSSIDELTKIANRRTFDSKLQHYWSTHHREVKEMSLLFCDVDSFK 479

Query: 141 QINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
             NDN+GHP+GD V+A ++  +   V      V R GGEEFA     + E+ A  LA  +
Sbjct: 480 LYNDNYGHPMGDTVLANIAQVMDEQVHRGADLVARYGGEEFAVILPNTDEEGAIRLAIKI 539

Query: 200 RKIIENSQINISSGPSI-HITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256
              +EN  I  +   +  H+T+S G+A  C ++  S   ++  AD+ALY+AK++GRN+  
Sbjct: 540 IAAVENLAIEHTHSKAAKHVTLSIGVATMCPEDESSEAQLLENADKALYLAKENGRNQYC 599

Query: 257 CFSDIENNTC 266
            + D E    
Sbjct: 600 VYRDEEREPA 609


>gi|83646741|ref|YP_435176.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83634784|gb|ABC30751.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 637

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 87/188 (46%), Gaps = 11/188 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           ISG  + EL  +  ++ Q++  D L+GL N   F+  L           ++++++F D+D
Sbjct: 187 ISGVDVSELKEANRKMQQMALYDSLTGLANRRLFVDRLEQAVKAASRDRKQIALLFLDLD 246

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILA 196
            FK+IND  GH  GD ++  ++ +L         V RLGG+EF               +A
Sbjct: 247 QFKRINDTLGHDAGDSLLQTVAQRLKNCVRAKDTVARLGGDEFTVLLTDIVDTFSVTPVA 306

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             + K ++   I +     + ++ S G+            ++  AD ALY AK+ GR+R 
Sbjct: 307 TQILKALKE-PIKLKK-HEVIVSTSIGVTLAPTDGANADVLMKNADLALYRAKEHGRDRY 364

Query: 256 VCFSDIEN 263
             +++  N
Sbjct: 365 HFYTEELN 372


>gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domains
           protein [Herbaspirillum seropedicae SmR1]
 gi|300075689|gb|ADJ65088.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domains
           protein [Herbaspirillum seropedicae SmR1]
          Length = 701

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 10/184 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQI 142
           + E       +   +  D L+GL N +     L              ++ F D+D FK I
Sbjct: 252 ITERKAHEAEMRHQATHDALTGLPNRNMLHEHLQRALRVARQKGALTAVAFVDLDQFKFI 311

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+ GH VGD+++  ++ +L         V R GG+EF       +E EA  +A  +++I
Sbjct: 312 NDSLGHQVGDELLKTVAQRLQACLREADMVARQGGDEFVLVLQNQTEGEAG-IAEVMQRI 370

Query: 203 IENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +        +G     +T S G++      + + +++  AD A+Y AK+ GRN    F+ 
Sbjct: 371 LAAVARPWQAGDREFQVTASIGVSRYPADGKDVESLLKHADSAMYRAKEQGRNNFQFFAP 430

Query: 261 IENN 264
             ++
Sbjct: 431 WMDS 434


>gi|288958709|ref|YP_003449050.1| two-component response regulator modulated diguanylate cyclase
           [Azospirillum sp. B510]
 gi|288911017|dbj|BAI72506.1| two-component response regulator modulated diguanylate cyclase
           [Azospirillum sp. B510]
          Length = 464

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 14/191 (7%)

Query: 81  LLGYISGSILKELFIS-----YNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEK 128
           LL      I ++ +       Y +   ++  D L+G+ N           +      ++ 
Sbjct: 265 LLARARTQIRRKRYQERLRSNYEQSLSMALTDSLTGVFNRRYVNAHLPRLLERAIDSHKP 324

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +S++ FDID+FK +ND +GH +GD+V+  +S +      T   V RLGGEEF      + 
Sbjct: 325 VSVLMFDIDHFKVVNDTYGHAIGDEVLREVSARSSRNLRTFDLVARLGGEEFIVILPDTD 384

Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCH-KEPISTIIYRADQALYV 246
            + A I+A  LR  I ++   +SS    I++T+S GI+      +    +I RAD+ALY 
Sbjct: 385 GEAALIVAERLRSRIADTPFAVSSERGEINVTVSIGISIGGRLGDTAEGLIRRADEALYE 444

Query: 247 AKKSGRNRVVC 257
           AK+SGRN V+ 
Sbjct: 445 AKRSGRNCVIA 455


>gi|119505319|ref|ZP_01627393.1| Response regulator [marine gamma proteobacterium HTCC2080]
 gi|119458774|gb|EAW39875.1| Response regulator [marine gamma proteobacterium HTCC2080]
          Length = 365

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 63/208 (30%), Positives = 100/208 (48%), Gaps = 14/208 (6%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLN 114
           F  +  ++   L+L+  +  +   +  +   + +   EL  +  ++  L+  D L+ L+N
Sbjct: 156 FETIARMIAAKLALIEQTELVKKYMAELEAKVEERTLELKRANEKLEYLASTDPLTELVN 215

Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
                  L         Y  +LS++  DID+FK +ND  GH VGD+VIA + +    +  
Sbjct: 216 RRRLDEVLEQEFERTSRYQGELSLILLDIDHFKAVNDTRGHQVGDEVIAGVGNIAKQMSR 275

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
                GR GGEEF   A  +S   A   A  LR  IEN++        + ++ S G+A  
Sbjct: 276 KSDTAGRWGGEEFLIVAPQTSCDNAVAFAEKLRLSIENTEF----SSGVRVSASFGVASL 331

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRV 255
              E I  ++ RAD+ALY AK +GRNRV
Sbjct: 332 ETGETIQLVLKRADEALYRAKHNGRNRV 359


>gi|284050759|ref|ZP_06380969.1| response regulator receiver modulated diguanylate cyclase
           [Arthrospira platensis str. Paraca]
          Length = 392

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 90/185 (48%), Gaps = 14/185 (7%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
           L  +   + +L+  D L+ + N   F   L           E ++++  D+DYFK  ND 
Sbjct: 188 LKKTNQELQRLALYDDLTQVANRRRFNEYLAYNWHRCSREQEPIALILCDVDYFKPYNDT 247

Query: 146 FGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           FGH  GD  +  ++  +   +  +   V R GGEEFA     +    A  +A  +RK +E
Sbjct: 248 FGHQAGDDCLHKIARAISGAIQRSVDLVARYGGEEFAIILPNTPINGAVKVAERIRKQVE 307

Query: 205 NSQINISSGPSI-HITISAGIAER-CHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           N ++      S  ++T+S G+A +  H E  + ++I +AD+ALY AK  GRN  V     
Sbjct: 308 NLRVPHPGSQSSDYVTVSLGVACKIPHSELSVDSLIAQADEALYQAKNQGRNCTVI---A 364

Query: 262 ENNTC 266
           E+ +C
Sbjct: 365 ESPSC 369


>gi|288940064|ref|YP_003442304.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Allochromatium
           vinosum DSM 180]
 gi|288895436|gb|ADC61272.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Allochromatium vinosum DSM 180]
          Length = 1069

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 87/188 (46%), Gaps = 10/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFK 140
           + + +L  S  R+  L   D L+ L N           +        +++++F D+D FK
Sbjct: 622 TDISQLKQSEARLEHLVHYDPLTNLPNRRLVQSRLEHALERADRQGGRVAVLFVDLDRFK 681

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            +ND+ GHP GD ++  L+ +L         + RLGG+EF          ++AA +A  L
Sbjct: 682 TVNDSLGHPSGDVLLELLARRLSERVREDDTLARLGGDEFLVLLENLQRPEDAAAVAESL 741

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
             +++    ++ +G  +++  S GI+        ++ +I  AD A+Y AK+ GRN    +
Sbjct: 742 LSLLQQ-PFHLPNGQELYVGASIGISLYPDDGHTVTDLIQHADVAMYQAKEEGRNTYRFY 800

Query: 259 SDIENNTC 266
           +     T 
Sbjct: 801 TPSLTQTA 808


>gi|328949559|ref|YP_004366894.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Marinithermus hydrothermalis DSM 14884]
 gi|328449883|gb|AEB10784.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Marinithermus hydrothermalis DSM 14884]
          Length = 1053

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 11/183 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           I+   + +      ++ QL+  D L+ L N                 Y E L++++ D+D
Sbjct: 620 INARDVTQRKRYEAQVEQLAYYDPLTQLANRRFLQERAQQAITHARRYGESLALLYLDLD 679

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FKQ+ND+ GH  GD+++A ++ +L         + RLGG+EF      + ++EA+  A 
Sbjct: 680 RFKQVNDSLGHEAGDELLAQVAARLRRFVRESDTLARLGGDEFVLLLTEAGQEEASRSAE 739

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            L K +   Q     G ++ + +S GIA          T++ RAD A+Y AK   R    
Sbjct: 740 RLVKALR--QPFSVRGHTVSVEVSIGIALYPQDGSTFETLMRRADAAMYRAKNEHRG-FQ 796

Query: 257 CFS 259
            ++
Sbjct: 797 FYA 799


>gi|152992796|ref|YP_001358517.1| signal transduction response regulator [Sulfurovum sp. NBC37-1]
 gi|151424657|dbj|BAF72160.1| signal transduction response regulator [Sulfurovum sp. NBC37-1]
          Length = 409

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 114/250 (45%), Gaps = 23/250 (9%)

Query: 30  YFSIFFSIFI---ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL----L 82
           + S+F  +      T +  A+I   Y+       L   L+ +L  V+  +   +     L
Sbjct: 157 FRSVFIPMLTKGKVTYLVAADIETSYVKSLLKDSLFKSLMNSLWFVMFLVPFIIFYFREL 216

Query: 83  GYISGSIL-------KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128
            Y   ++        KEL  +  ++ +L+  D L+ L N   F       +      + +
Sbjct: 217 WYSKKALESKVEKRTKELNKTNEKLKKLASTDPLTELFNRRHFESLTEPFLELAKRNDTE 276

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           ++I+  DID FK+IND +GH VGD VI  L+  L         V R GGEEF      ++
Sbjct: 277 IAIIVIDIDNFKKINDTYGHKVGDDVIVDLATILKRGSRQSDIVCRWGGEEFIILLANTN 336

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYV 246
            +    +A  +RK +EN    +  G  +  TIS G+A   +     I  +I RAD+ALY 
Sbjct: 337 GKSVLTIAEKIRKKVENLVRTLEDGNELKFTISCGVALVNKESNTSIHNVIDRADRALYK 396

Query: 247 AKKSGRNRVV 256
           AK SG+N+VV
Sbjct: 397 AKNSGKNKVV 406


>gi|89093154|ref|ZP_01166104.1| GGDEF family protein [Oceanospirillum sp. MED92]
 gi|89082450|gb|EAR61672.1| GGDEF family protein [Oceanospirillum sp. MED92]
          Length = 344

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 63/180 (35%), Positives = 97/180 (53%), Gaps = 8/180 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS----YNEKL--SIVFFDIDYF 139
           + + ++ L    N+  Q +R+D L+ L N  AF + L         +   S+V  DID+F
Sbjct: 161 AQAEIESLKEELNKTRQDARVDPLTNLFNRRAFDAELAQVVGLNGSEFTSSLVLVDIDHF 220

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+ ND +GH +GDKV+ ++   L  +   PM   R GGEEFA    G+S+++A  +A  +
Sbjct: 221 KKFNDTYGHLMGDKVLQYVGKLLKDICLEPMLPVRFGGEEFAVLMPGTSKEQAFEIAEKV 280

Query: 200 RKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R  I+  +I       I   IT S G+++    E +  +I R DQALY AK +GRN+VV 
Sbjct: 281 RLKIQAIRIKQKKSGDIISSITASFGVSQLTDAETVEQLIERTDQALYQAKNNGRNQVVI 340


>gi|157376469|ref|YP_001475069.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sediminis HAW-EB3]
 gi|157318843|gb|ABV37941.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sediminis HAW-EB3]
          Length = 1020

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 101/226 (44%), Gaps = 19/226 (8%)

Query: 58  FYGLEYILVENLSLVIISITISLLL---GYISGSI-----LKELFISYNRISQLSRIDCL 109
           + G  ++  ++ +  I+ +TI+ +L   G +   +     + E   + + I + +  D L
Sbjct: 527 WQGEVWLKHKSGTEFIVWLTINTILDNKGEVYRRVALFSDITEKKQAEHIIWKQANYDPL 586

Query: 110 SGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GL N    +  LG          +  +++F D+DYFK++ND+ GH +GD ++   + +L
Sbjct: 587 TGLPNRRMLLEYLGTELLKSDRNKKHFALMFLDLDYFKEVNDSLGHDIGDLLLVETAKRL 646

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                    V RLGG+EF          +    +A ++   +     N+    S +I+ S
Sbjct: 647 KGCIRESDVVARLGGDEFTVVLSAIQDHKGVERVAENILSRLAE-PFNL-DNESAYISAS 704

Query: 222 AGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            GI         I  ++  ADQA+Y AK+ GRNR   F+       
Sbjct: 705 IGITLYPDDASSIDGLLKHADQAMYAAKEQGRNRYHYFTPSMQEYA 750


>gi|86747317|ref|YP_483813.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
 gi|86570345|gb|ABD04902.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Rhodopseudomonas palustris HaA2]
          Length = 743

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 60/189 (31%), Positives = 91/189 (48%), Gaps = 14/189 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQ 141
            + E + S  +I+ ++R D L+GLLN  AF          L  + E  S++  D+D FK 
Sbjct: 298 DITERYRSEQQIAHMARHDLLTGLLNRGAFHERMDEACARLRRWGETFSVIMLDLDRFKL 357

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE--QEAAILANDL 199
           +ND+ GHP GD ++  +  +L         + RLGG+EFA     + +   EA   A+ +
Sbjct: 358 VNDSLGHPAGDALLRAVVSRLKACIRETDVLARLGGDEFAVLQTRTKDSYNEAVAFADRI 417

Query: 200 RK-IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +I+  +I    G  + I+ SAGIA    H      +I  AD ALY AK +GRN  V 
Sbjct: 418 VNCLIDPIEI---DGHQLVISTSAGIALAPQHGTDSDELIKNADLALYRAKAAGRNGYVT 474

Query: 258 FSDIENNTC 266
           F     +  
Sbjct: 475 FETAMKDRA 483


>gi|78223917|ref|YP_385664.1| diguanylate cyclase with GAF sensor [Geobacter metallireducens
           GS-15]
 gi|78195172|gb|ABB32939.1| diguanylate cyclase with GAF sensor [Geobacter metallireducens
           GS-15]
          Length = 686

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 59/193 (30%), Positives = 91/193 (47%), Gaps = 13/193 (6%)

Query: 78  ISLLLGYI-SGSILKELFISYNR---ISQLSRIDCLSGLLNHSAFISSLG-------SYN 126
           ++LL+ +    SI+ E  +S  R   + QLS  D L+GL N       +          N
Sbjct: 473 LNLLITFADHASIMIERALSIERADFLEQLSITDPLTGLYNRRFLKRRMEEELARSIRQN 532

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             L+++  D+D FK  ND  GH  GD+ +  ++  L         V R GGEEF     G
Sbjct: 533 LSLTVMLIDLDNFKIYNDLCGHLAGDRALKKMARILSDTARQMDVVTRYGGEEFCIILPG 592

Query: 187 SSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAERCHKEPIST-IIYRADQAL 244
           +S++E+  +A  +R+ IE  + +     P   +T S G++       +   ++  AD AL
Sbjct: 593 TSKKESLFVAERIRREIEGEEFSHEENLPQGRLTASIGVSSFPEDGNVEAVLVKAADVAL 652

Query: 245 YVAKKSGRNRVVC 257
           Y AK  GRNRVV 
Sbjct: 653 YRAKSEGRNRVVI 665


>gi|156972544|ref|YP_001443451.1| diguanylate cyclase [Vibrio harveyi ATCC BAA-1116]
 gi|156524138|gb|ABU69224.1| hypothetical protein VIBHAR_00176 [Vibrio harveyi ATCC BAA-1116]
          Length = 354

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 61/180 (33%), Positives = 98/180 (54%), Gaps = 9/180 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           S   + +  +   R+ +LS  D L+G+LN  AF++ L          ++ LS +  DID+
Sbjct: 154 SVRDVTKTHLLEKRLKELSETDELTGVLNRRAFLTRLDKAMSSHLRPSQTLSCIMIDIDH 213

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND  GH  GD+VI  ++           F+GRLGGEEFA   + +S  +A  +A  
Sbjct: 214 FKEINDQVGHFSGDQVIHHVAKICQRAIRGSDFIGRLGGEEFAVILVNTSAIQAYDVAER 273

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           +R+ I+N+   +  G  I  T+S G+AE   +    + ++  AD+A+Y +K SGRN+V  
Sbjct: 274 IREAIQNAPCKV-DGIEISTTVSIGVAEYDEQVSSTTELMVNADKAMYYSKHSGRNQVTL 332


>gi|298488828|ref|ZP_07006854.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
            savastanoi NCPPB 3335]
 gi|298156628|gb|EFH97722.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
            savastanoi NCPPB 3335]
          Length = 1198

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 15/192 (7%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            S + E   S +RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 827  SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQAWVVLMFLDLDRFK 886

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-----L 195
             IND+ GH  GD+++  ++ +L+    +   V R+GG+EF       + +EAA+     +
Sbjct: 887  PINDSLGHAAGDRMLQEMATRLLACVSSDDTVARMGGDEFTLLLQPDTSREAALTRAIHV 946

Query: 196  ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            A  +   +      +  G    +T S GIA      + +S ++  AD A+Y AK+ G+N 
Sbjct: 947  AERILTSL--ITPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNN 1004

Query: 255  VVCFSDIENNTC 266
               +    N T 
Sbjct: 1005 FQFYQADMNATA 1016


>gi|301061890|ref|ZP_07202620.1| diguanylate cyclase (GGDEF) domain protein [delta proteobacterium
           NaphS2]
 gi|300443994|gb|EFK08029.1| diguanylate cyclase (GGDEF) domain protein [delta proteobacterium
           NaphS2]
          Length = 789

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 96/178 (53%), Gaps = 10/178 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
           G + +E+  +  +IS+++ +D L+GL N   F+ +L         + + LS+   DID F
Sbjct: 610 GKLKREIRSAQRKISEMATLDELTGLYNRRYFMEALDRERARAERHQKALSLCMLDIDLF 669

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++NDN GH  GD V+A + + +        F  R GGEEFA     +  + A +    L
Sbjct: 670 KKVNDNLGHTAGDLVLANMGEIIREWSRQTDFPCRYGGEEFAVILPETDLEGARVACERL 729

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255
           R  +  S++   +GP I +T+S GI E      + +  +I RAD+A Y AK++GRNRV
Sbjct: 730 RHKVAESRVEWRTGP-IRVTVSIGITENRIGIKDSLRKLIDRADEARYHAKETGRNRV 786


>gi|52859175|ref|ZP_00055746.3| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 348

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 8/167 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            + +L+  D L+   N   F       +          +++  DID+FK+IND +GH  G
Sbjct: 180 ELEELASRDSLTQTANRRHFEHLAGLELDHARRMGRSFALLALDIDHFKRINDTWGHAAG 239

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+ +   ++   +       +GR+GGEEFA A   +    A ++A  LR  +    +  +
Sbjct: 240 DEALKAFANACRLSLREYDILGRIGGEEFAVALPNTGPDGARVIAERLRAAVAELVVRPA 299

Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            G    +T+S G+A+    +  I T++ RADQALY AK +GRNRVV 
Sbjct: 300 KGELFELTVSIGVAQLREGDLTIDTLLERADQALYRAKHAGRNRVVA 346


>gi|207859680|ref|YP_002246331.1| hypothetical protein SEN4316 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|206711483|emb|CAR35868.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 354

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 73/275 (26%), Positives = 125/275 (45%), Gaps = 22/275 (8%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYIL 65
           F  IW  H      +   + F  +  S+   +FI ++ F ANI  F +   P   +   L
Sbjct: 78  FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 137

Query: 66  VEN---------LSLVIISITISLLLG----YISGSILKELFISYNRISQLSRIDCLSGL 112
            +N         L+L ++ I I  ++       +  ++ +L      ++ LS +D L+GL
Sbjct: 138 NDNEQGLRILYLLALPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 197

Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +     S    ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 198 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 257

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      +  Q+A   A  +R+ + + +I      S+  ++T+S GIA 
Sbjct: 258 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 317

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                 I   I +AD+ALY AK  GRN ++   D+
Sbjct: 318 LT-DRNIGDAIEKADKALYEAKHLGRNHILVSDDM 351


>gi|206901792|ref|YP_002251455.1| response regulator [Dictyoglomus thermophilum H-6-12]
 gi|206740895|gb|ACI19953.1| response regulator [Dictyoglomus thermophilum H-6-12]
          Length = 718

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 14/196 (7%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
           VI  I  S +   I G+ L      +  ++QL+  D L+ L N           I     
Sbjct: 528 VIYEILRSQISAAIQGAKL------FEELNQLAITDPLTKLPNRRYIEAEFQKEIERSKR 581

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           Y+  LS++  D+D FK IND FGH  GD V+  +++ L         VGR GG+EF    
Sbjct: 582 YSSPLSVMVLDLDNFKIINDTFGHQYGDGVLKKIAENLRKYCRKVDIVGRFGGDEFVIIL 641

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQA 243
             ++ +++  +A+ + K +E   I + +G  ++I++S GIA           ++  AD A
Sbjct: 642 PETNLEKSIKVADKIIKNLEKMNITLPNGEKVYISVSIGIASYPETTKDPEKLLSLADIA 701

Query: 244 LYVAKKSGRNRVVCFS 259
           +Y AKK G  +    S
Sbjct: 702 MYNAKKLGGKQYSVAS 717


>gi|160898708|ref|YP_001564290.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Delftia acidovorans SPH-1]
 gi|160364292|gb|ABX35905.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Delftia acidovorans SPH-1]
          Length = 947

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 10/183 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           E   +  RI QL+  D L+ L N S  ++              +L++VF D+D FKQ+ND
Sbjct: 493 EREQARRRIRQLAFYDGLTTLPNRSLLLAQAEQALSVASHEGHELAVVFIDLDRFKQVND 552

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GHP GD+++  ++ ++     T    GRL G+EF          +AA +   L+  + 
Sbjct: 553 SLGHPAGDRLLCSVAQRIQAELRTGDIAGRLSGDEFVIVLPHCGGAQAAEVIERLQSAL- 611

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             +  +    S+  T S GIA        + T+++RAD A+Y AK  GR     FS   N
Sbjct: 612 -GEPCMIDDVSLASTASCGIAVFPADGRDMETLLHRADMAMYQAKSGGRGLYSFFSPEMN 670

Query: 264 NTC 266
              
Sbjct: 671 RLA 673


>gi|27381658|ref|NP_773187.1| hypothetical protein bll6547 [Bradyrhizobium japonicum USDA 110]
 gi|27354827|dbj|BAC51812.1| bll6547 [Bradyrhizobium japonicum USDA 110]
          Length = 830

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 56/217 (25%), Positives = 106/217 (48%), Gaps = 15/217 (6%)

Query: 60  GLEYILVENLSLVIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
            LE       +++++ + ++L L     ++    + L ++  R+ +L++ D L+GL N +
Sbjct: 354 ALETSYDRAAAVLVVGMLLTLSLSAYLMLASRNSRRLSLANRRVLELAQTDILTGLPNRA 413

Query: 117 AFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            F++ L   N +        SI+  D+D FK +ND+ GH  GD ++  ++ +L       
Sbjct: 414 FFLARLDDLNGQLNDGGSTFSILMLDLDRFKNVNDSLGHGAGDALLRQVAQRLKSALRAT 473

Query: 170 MFVGRLGGEEFAAAALGSSEQE--AAILANDLRKIIENSQINISSGPSIHITISAGIA-E 226
             + RLGG+EFA    G+ +Q   +  LA  + K++   +  +  G  + I  S GIA  
Sbjct: 474 DVLARLGGDEFAIIQEGAEDQRTCSTELAARIAKLVA--EPFLLPGHRVEIGTSIGIAIA 531

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             H      ++ +AD ALY +K +GRN    + +  +
Sbjct: 532 PDHGSDQEQLLKKADLALYRSKSAGRNCFTIYDEAMS 568


>gi|239905612|ref|YP_002952351.1| putative signaling protein [Desulfovibrio magneticus RS-1]
 gi|239795476|dbj|BAH74465.1| putative signaling protein [Desulfovibrio magneticus RS-1]
          Length = 624

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 60/181 (33%), Positives = 96/181 (53%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDY 138
           +   + E  I   R+ +++  D L+GL N   F+            +   LSI  FDID+
Sbjct: 442 AARDITERKIMEERLKEMATTDSLTGLNNRQHFLEHSSILFEMAKRHKANLSIALFDIDH 501

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND +GH  GD V+  LS   +  F +   +GR+GGEEFA     + ++EA + +  
Sbjct: 502 FKQVNDTWGHEAGDLVLRELSKLALNCFRSSDIIGRIGGEEFAVIMPETDKEEAILASER 561

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVV 256
            RK++E+++    +   ++IT+S GIA+        I+ +   +D ALY AK +GRN V 
Sbjct: 562 FRKLVESTKFEYENDL-LNITVSIGIAQFDPNTNTTINDLTKISDDALYTAKANGRNMVF 620

Query: 257 C 257
           C
Sbjct: 621 C 621


>gi|205374857|ref|ZP_03227650.1| diguanylate cyclase [Bacillus coahuilensis m4-4]
          Length = 466

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 9/185 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDI 136
            I  + + E+    +++   +  D L+G+ N  AF              +   +I+  DI
Sbjct: 277 LIIFTDMTEVKNLQSQLEHFAYYDELTGIYNRRAFFQYCEEAFQESKEQDTPFTIILMDI 336

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK++ND +GH VGD+V+  ++              R GGEEF     G +E+E A LA
Sbjct: 337 DYFKKVNDTYGHSVGDQVLEQVAKVCQSQLHGHELFARYGGEEFVLGVKGYTEEEGAALA 396

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             LR  +E   I+   G  I +T+S G+A      E +  I+  ADQALY AK++GRNRV
Sbjct: 397 EQLRSEVEALTIHTPDGK-ITVTLSLGVAALTKEDEALYQILNHADQALYRAKEAGRNRV 455

Query: 256 VCFSD 260
             + +
Sbjct: 456 CVYQN 460


>gi|70729261|ref|YP_258998.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas fluorescens Pf-5]
 gi|68343560|gb|AAY91166.1| CHASE domain/sensory box-containing nucleotide cyclase, putative
           [Pseudomonas fluorescens Pf-5]
          Length = 799

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 65/183 (35%), Positives = 95/183 (51%), Gaps = 13/183 (7%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIV 132
           L  GYIS   + +L      +  LS  D L+G+ N   F   L +   +L       +++
Sbjct: 618 LWHGYIS--DISDLKRVEEELRALSVTDSLTGIHNRRYFQERLQAEMHRLERGGGVMAVI 675

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK+IND +GH VGD+V+  L +++           RLGGEEF      +S Q+A
Sbjct: 676 MLDIDHFKRINDQYGHGVGDQVLRGLCERIGRRLRRIDVFCRLGGEEFMVLCPDTSGQQA 735

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            ILA +L   + +S I    GP   +T S GIA     E    ++ RAD A+Y AK++GR
Sbjct: 736 LILAQELWHGVRSSPI----GPVESVTASFGIASWRAGEGADELLLRADSAVYAAKQAGR 791

Query: 253 NRV 255
           +RV
Sbjct: 792 DRV 794


>gi|225849752|ref|YP_002729986.1| signal transduction response regulator [Persephonella marina EX-H1]
 gi|225646225|gb|ACO04411.1| signal transduction response regulator [Persephonella marina EX-H1]
          Length = 683

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 65/219 (29%), Positives = 104/219 (47%), Gaps = 11/219 (5%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLL--LGYISGSILKELFISYNRISQLSRIDCLSG 111
           G+    GL  +  E LS   I+I  S+L  +  ++GS  + L  +   +   +  D L+ 
Sbjct: 216 GIGGTLGLIVLPEERLSRKDINILNSILSIMTLVTGSS-RALSKAITELEYFAGHDPLTD 274

Query: 112 LLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           L N   F              N K S++  D+D FK IND +GH +GD V+  ++D L  
Sbjct: 275 LYNRRIFEDLLKYEVSRAKRKNYKFSLILIDLDNFKYINDTYGHHIGDIVLKSVADILEA 334

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                  V R+GG+EF      +  ++A I+A  +RK +EN+++ I  G  I ++ S G+
Sbjct: 335 SIRDGDLVARIGGDEFVILLSETELEKALIVAERIRKNLENNKLCIFEGAVISVSASLGV 394

Query: 225 AERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            E   H      ++   D ALY AK  G+N+V   +  E
Sbjct: 395 VEFPTHGTTKEELMMVVDNALYRAKDLGKNKVYVPTHEE 433


>gi|158424036|ref|YP_001525328.1| response regulator [Azorhizobium caulinodans ORS 571]
 gi|158330925|dbj|BAF88410.1| response regulator [Azorhizobium caulinodans ORS 571]
          Length = 367

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 6/176 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           + L  +   + +L+  D L+GLLN  AF      L  +    S++  DID+FKQ+ND +G
Sbjct: 174 ERLNQARRELVRLATRDGLTGLLNRRAFFIQAEDLLRHGIVASVILLDIDHFKQVNDTYG 233

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  ++  +    G      R+GGEEFA    G +E +A   A  LR  I ++ 
Sbjct: 234 HDGGDVVLTAVARAMSAYAGR---AARVGGEEFAILLPGVTESDAYEEAERLRWRIADTA 290

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + +  G +I +T S G+AE    +     + RAD ALY AK  GRNR V   ++ +
Sbjct: 291 VTLRDGRTISVTASLGVAEHATDDNADEWMKRADIALYAAKTGGRNRTVMGEEVSD 346


>gi|158338941|ref|YP_001520118.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158309182|gb|ABW30799.1| diguanylate cyclase (GGDEF) domain protein [Acaryochloris marina
           MBIC11017]
          Length = 449

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 8/183 (4%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFF 134
           L      +  +L  S   + +L+ +D L+ + N   F       I         +S++  
Sbjct: 244 LAETFNLMANQLEQSQQDLYRLATLDGLTEVYNRREFNRWLLVEIERSQRGEHPVSLIMV 303

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK++ND +GH  GD  +  ++  L         V R GGEEF      ++  ++ +
Sbjct: 304 DIDHFKRLNDTYGHQAGDLALCEVAQLLQREVRPGDIVCRYGGEEFGVILPKATSADSWV 363

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           +A  +R  I    + + S   I +T S G+A    H +    ++ +ADQALY AK  GRN
Sbjct: 364 IAERIRLAIAEKSVVLPSQQHIDMTASLGVATYPDHADCKERLVKQADQALYTAKYQGRN 423

Query: 254 RVV 256
           RV 
Sbjct: 424 RVH 426


>gi|144898985|emb|CAM75849.1| GGDEF domain [Magnetospirillum gryphiswaldense MSR-1]
          Length = 438

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 101/213 (47%), Gaps = 17/213 (7%)

Query: 65  LVENLSLVIISITISLL------LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           L +N S+  + I++S L      L       + E   + +RI +L+  D L+GL N +  
Sbjct: 215 LRQNGSMFPMEISVSELRHGRHRLFTAILRDISERKEAEDRIRRLAHHDTLTGLPNRNLL 274

Query: 119 -------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  ++ +  +   +++++ D+D FK IND+ GH  GD V+  ++++L+    +   
Sbjct: 275 NDRMNHALARIKRHGGHMAVLYVDLDKFKPINDSLGHEAGDAVLREVANRLMSCVRSSDT 334

Query: 172 VGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
           V R+GG+EF       + Q EAA++A  +   +E S           +  S G+A   H 
Sbjct: 335 VSRVGGDEFVVVVEEITRQGEAALVARKILDALEQSIPYHE--HQCQVGASIGVALFPHD 392

Query: 231 -EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              I  +   AD A+Y  K SGRN    +SD +
Sbjct: 393 GTTIEEVCKAADLAMYRVKHSGRNGYCFYSDTD 425


>gi|124265497|ref|YP_001019501.1| diguanylate cyclase/phosphodiesterase [Methylibium petroleiphilum
           PM1]
 gi|124258272|gb|ABM93266.1| diguanylate cyclase/phosphodiesterase [Methylibium petroleiphilum
           PM1]
          Length = 806

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 87/181 (48%), Gaps = 10/181 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
             L++   +   I  L+  D L+GL N  AF++          +  E L+++F D+D+FK
Sbjct: 361 RDLRDRHAAQAHIHHLAHHDALTGLPNRLAFMAEIDQLMARAAASREALALLFIDLDHFK 420

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
           ++ND+ GH  GD+++  ++ ++  V      V R GG+EF     G    ++ A +A  L
Sbjct: 421 RVNDSLGHLAGDELLKTVAQRIGAVLRASDVVARFGGDEFMVLIGGGPRLEDVADVARKL 480

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
              IE   ++   G SI +T S GIA         + +I  AD A+Y AK  GR     F
Sbjct: 481 LAAIE-VPLDAEVGRSISVTPSIGIAMFPGDGITPAELIKHADTAMYRAKARGRATYQFF 539

Query: 259 S 259
            
Sbjct: 540 D 540


>gi|220908650|ref|YP_002483961.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Cyanothece sp. PCC 7425]
 gi|219865261|gb|ACL45600.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7425]
          Length = 1094

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 88/185 (47%), Gaps = 11/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            +     +   I   +  D L+GL N + F   L         Y   L++ F D+D FK 
Sbjct: 636 DISARKQAELTIHYQAFHDLLTGLPNRALFDDRLNQALADARRYQHLLAVFFLDLDRFKV 695

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           IND  GH +GD+++  ++ +L+        + R GG+EF        +  ++  +A  L 
Sbjct: 696 INDTLGHAIGDQLLQQVAQRLLPCLREIDTIARWGGDEFTLLLPHVQTPADSVKIAERLL 755

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++        G ++HIT S GIA   H  E  +T++  AD ALY AK+ GRN + C++
Sbjct: 756 ASLK--PPFSLKGHNLHITASLGIALYPHDGEDGTTLLRNADAALYRAKEEGRNGLYCYT 813

Query: 260 DIENN 264
            + N+
Sbjct: 814 PMLNS 818


>gi|302878359|ref|YP_003846923.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Gallionella capsiferriformans ES-2]
 gi|302581148|gb|ADL55159.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Gallionella capsiferriformans ES-2]
          Length = 1301

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 13/213 (6%)

Query: 60   GLEYILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLN---- 114
            G EY+ +  +S   +  T   +  Y+S    + E      RI QL+  D L+GL N    
Sbjct: 830  GTEYVELARIS--PLRHTDGRVTNYLSIKEDITEQKQVEARIRQLAHFDLLTGLPNQTLL 887

Query: 115  --HSAF-ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
               + F +         L+++F DID+FK IND  GH +GD+++  L+ ++ ++      
Sbjct: 888  KDRAGFAMQMAQRSAHHLAVLFLDIDHFKNINDTLGHRIGDELLVHLAKRMKLLLRDEDT 947

Query: 172  VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
            + R GG+EF      +    AA +A  + + +  +         + +T S GIA      
Sbjct: 948  LSRFGGDEFILVLPDTDADGAAHVAEKILETVAKT--CYIEQHELVVTPSIGIAMYPSDG 1005

Query: 231  EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                 +   AD A+Y AK+ GRN    F+    
Sbjct: 1006 MDFDKLYQSADVAMYRAKQDGRNNFRFFTSEMQ 1038


>gi|157963612|ref|YP_001503646.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157848612|gb|ABV89111.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           pealeana ATCC 700345]
          Length = 621

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 108/207 (52%), Gaps = 17/207 (8%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
           E LS ++   T+ L +       L+EL  +  ++++ +R+D L+G+ N ++F   +    
Sbjct: 422 EKLSQMVQERTLELEIA------LRELNEANQKLTEQTRVDSLTGVKNRASFDKRIMAEG 475

Query: 123 ---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGE 178
                    LSI+  DID FK IND++GH  GD+ +  ++D+L          V R GGE
Sbjct: 476 RISRRQQTPLSILMLDIDRFKLINDSYGHLAGDQALRVIADKLKETLKRPTDLVSRFGGE 535

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTI 236
           EFA     + +  A  +A  LRK+I    I+     SI +T+S G++      +E  + +
Sbjct: 536 EFAIILPNTDKIGAQQVAETLRKVICELPISWGED-SIPLTVSIGVSSEIITSEEHTTLL 594

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIEN 263
           + +AD+ALY AK  GRNRV  +S  ++
Sbjct: 595 LEQADKALYQAKNDGRNRVRLYSPDQD 621


>gi|330988113|gb|EGH86216.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 425

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 59/183 (32%), Positives = 92/183 (50%), Gaps = 12/183 (6%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           +  Y+S    +        ++ +++  D L+GL N  A   +L           +  S++
Sbjct: 237 ITHYVSISQDVTTRLGREQKLLEIAHSDPLTGLNNRRAAEHTLERLIDTARISGKPFSLI 296

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK +ND +GHP GD+V+  ++  L           R GGEEF      SS   A
Sbjct: 297 IGDIDHFKSVNDRYGHPAGDRVLTSVAVILKQRIRLQDVAARWGGEEFLILVPDSSLDHA 356

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           A LA+ +R+ +E   I      +  +TIS G+A+    E  +++I RAD+ALY AK+ GR
Sbjct: 357 AELADRIREGVEGLLIP----NTGSVTISLGVAQLSPGETAASLIQRADKALYQAKRRGR 412

Query: 253 NRV 255
           NRV
Sbjct: 413 NRV 415


>gi|256005420|ref|ZP_05430384.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium thermocellum DSM 2360]
 gi|281417124|ref|ZP_06248144.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium thermocellum JW20]
 gi|255990646|gb|EEU00764.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium thermocellum DSM 2360]
 gi|281408526|gb|EFB38784.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium thermocellum JW20]
 gi|316940835|gb|ADU74869.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium thermocellum DSM 1313]
          Length = 862

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 90/208 (43%), Gaps = 18/208 (8%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-- 123
           + N S VII   ++L         + E+      +  +   D L+GL N S F   L   
Sbjct: 395 IRNDSDVIIGTVVAL-------KDITEIKKKDEILYNMEYYDPLTGLPNRSLFSDRLKMA 447

Query: 124 -----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                  NE  +++  D+D FK IND  GH VGD ++  +++++         V R+GG+
Sbjct: 448 LAQSKRNNEMCALIILDLDNFKAINDTLGHSVGDMLLKQVAEKIKGYLREVDTVARIGGD 507

Query: 179 EFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTI 236
           EF           +A   A+ + K  +  Q  I  G   +IT S GI       E   TI
Sbjct: 508 EFIIIQPQIKDINDATRAADRILKKFQ--QPWILEGKEYYITASMGIGIYPNDGEDPQTI 565

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENN 264
              AD ALY AK+ GRN    +++  N 
Sbjct: 566 FKNADTALYRAKELGRNNYQLYTESMNQ 593


>gi|153006423|ref|YP_001380748.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152029996|gb|ABS27764.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 322

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 14/185 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S+  +L  +   + + S  D L+GL N   F   L         Y + +S++  D+D+FK
Sbjct: 126 SLQDQLRRAQRDLEERSVTDALTGLKNRRFFDERLNEEFCRAHRYADPVSLIMIDLDHFK 185

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND  GHP GD V+      +      P    R GGEEFA     +    A  +A  + 
Sbjct: 186 SVNDRHGHPAGDAVLREAGAVVRKSIRDPDICCRYGGEEFAVILPKTHLPGALAVAERIW 245

Query: 201 KIIENSQINISSG-----PSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRN 253
           + +      I +G       + +T S G+A    K+      ++  AD+ALY AK++GRN
Sbjct: 246 RALGKRVYAIPAGAPGGPAELKVTASIGVAFFPSKDITAHEHLLRFADEALYQAKRAGRN 305

Query: 254 RVVCF 258
            +  +
Sbjct: 306 TICLY 310


>gi|71909585|ref|YP_287172.1| GGDEF [Dechloromonas aromatica RCB]
 gi|71849206|gb|AAZ48702.1| GGDEF protein [Dechloromonas aromatica RCB]
          Length = 523

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 59/211 (27%), Positives = 106/211 (50%), Gaps = 14/211 (6%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN---RISQLSRIDCLSGLLN 114
           +YG +   V  ++   + + ++LL   +     + L ++      +  +++ D L+GL N
Sbjct: 312 WYGRDVSSVIAVTGAGLGVALALLAWLMVTGRARALRMAAEMTEELRHMAQHDPLTGLPN 371

Query: 115 HSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
            + F   L         ++ + ++VF D+D+FK INDN+GH +GD V+  ++ +L     
Sbjct: 372 RALFSDRLHKELARAKRHDGQFALVFLDLDHFKPINDNYGHAIGDLVLQQVALRLKDTVR 431

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHITISAGIAE 226
               VGR+GG+EF       +E +AA+ LA  +R++I   Q     G  + I+ S G+A 
Sbjct: 432 ESDTVGRIGGDEFVVLVPELAESDAALSLAEKIRQVIR--QPFALDGRQLDISCSLGVAI 489

Query: 227 RCHKEPIS-TIIYRADQALYVAKKSGRNRVV 256
                    ++  RAD+A+Y AK  GR+ V 
Sbjct: 490 YPDDGIDEISLTKRADEAMYRAKDDGRDSVR 520


>gi|306843929|ref|ZP_07476524.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1]
 gi|306275684|gb|EFM57408.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1]
          Length = 264

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 14/234 (5%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL----KELFIS 96
             +   ++ LF +G T            L  + +S+   L++ +   + +     +L  +
Sbjct: 8   AALLTLSVVLFCVGATSITAFWSGETPGLMAISLSLGFPLVMAFPFSAFIFLRYDKLKEA 67

Query: 97  YNRISQ-------LSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNF 146
           YN++ +        +RID ++GLLN  A   ++    S  E  +++  D D+FK IND F
Sbjct: 68  YNQLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDTF 127

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+
Sbjct: 128 GHGVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENT 187

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV   +
Sbjct: 188 PFHTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVVFDEE 241


>gi|218885613|ref|YP_002434934.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756567|gb|ACL07466.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 498

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 83/179 (46%), Gaps = 10/179 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y  +   +  D L+ L N  +    L         Y   ++++  D+D+FK IND +GH 
Sbjct: 319 YREVKLQADHDALTRLHNRRSLDERLRTEFERHRRYGHSMTLLLLDLDHFKAINDTYGHL 378

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  L+D L     T  F  R GGEEF      + E +  +LA  LR  IE  ++ 
Sbjct: 379 AGDAVLRELADVLRHSIRTTDFAARYGGEEFVVILPHTEEAQGHMLAERLRHRIEQCRVQ 438

Query: 210 ISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              G  +  T+S G+A         +  ++  AD+ALY+AK +GRN V   S  E+   
Sbjct: 439 HH-GVQLSATVSIGVAGFSPGAFANVEELVREADRALYLAKANGRNVVCTMSGCEDAKA 496


>gi|56416328|ref|YP_153403.1| hypothetical protein SPA4365 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161617862|ref|YP_001591827.1| hypothetical protein SPAB_05726 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197365251|ref|YP_002144888.1| hypothetical protein SSPA4054 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|205355274|ref|YP_002229075.1| hypothetical protein SG4381 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|238910713|ref|ZP_04654550.1| hypothetical protein SentesTe_06183 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|56130585|gb|AAV80091.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161367226|gb|ABX70994.1| hypothetical protein SPAB_05726 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197096728|emb|CAR62351.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|205275055|emb|CAR40143.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|261249636|emb|CBG27506.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267996913|gb|ACY91798.1| hypothetical protein STM14_5467 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301161034|emb|CBW20571.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|320088987|emb|CBY98743.1| Uncharacterized membrane protein SSP1970 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|323132893|gb|ADX20323.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|326630439|gb|EGE36782.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
 gi|332991360|gb|AEF10343.1| hypothetical protein STMUK_4538 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 354

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 75/275 (27%), Positives = 125/275 (45%), Gaps = 22/275 (8%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58
           F  IW  H      +   + F  +  S+   +FI ++ F ANI  F +  L P       
Sbjct: 78  FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 137

Query: 59  ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112
                GL  + +  L +V I+I   +   Y   +  ++ +L      ++ LS +D L+GL
Sbjct: 138 NGNEQGLRILYLLALPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 197

Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +     S    ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 198 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 257

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      +  Q+A   A  +R+ + + +I      S+  ++T+S GIA 
Sbjct: 258 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 317

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                 I   I +AD+ALY AK  GRN ++   D+
Sbjct: 318 LT-DRNIGDAIEKADKALYEAKHLGRNHILVSDDM 351


>gi|77360154|ref|YP_339729.1| sensory box/GGDEF protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76875065|emb|CAI86286.1| conserved protein of unknown function ; putative sensory box/GGDEF
           family protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 323

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 73/277 (26%), Positives = 128/277 (46%), Gaps = 24/277 (8%)

Query: 6   KDFLSIW-LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI 64
           KD   ++    EK   S S   F++    F        IF       +    P  G    
Sbjct: 54  KDLFDLFPAIDEKWFRSKSESVFVLKNRSFTIWEQQPYIF------RFKNYRPITGKADY 107

Query: 65  LVENLSLVIISIT------ISLLLGYISGSIL--KELFISYNRISQLSRIDCLSGLLNHS 116
           + +N + + ++ T      I +++  ++   +  KEL     ++ Q+S+ D L+ L N  
Sbjct: 108 MYQNATFIPLTNTRGDVEHICIIIYDVTDVAVNKKELEQLNKKLEQVSQTDSLTQLANRG 167

Query: 117 AFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            +  +L     +        +++ FDID+FK++ND +GH  GD+ +  ++  L       
Sbjct: 168 HWEHTLRQEFLRTKRSGGCSTLLMFDIDHFKKVNDEYGHSCGDEALRHIAKLLKGTLRET 227

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
              GR GGEEFA   L + +Q A I+A  LR++I  + +       + +T+S GIA   +
Sbjct: 228 DIAGRYGGEEFAITLLDTDKQGAMIIAERLRELIAATPVAYKD-QLVSMTVSIGIASYSN 286

Query: 230 K-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           + +     I  AD+ALY +K +GRN +  F DI+N+ 
Sbjct: 287 EFKNHERWIEAADKALYNSKHNGRNSITMFDDIKNDA 323


>gi|117925030|ref|YP_865647.1| diguanylate cyclase [Magnetococcus sp. MC-1]
 gi|117608786|gb|ABK44241.1| periplasmic/7TM domain sensor diguanylate cyclase [Magnetococcus
           sp. MC-1]
          Length = 464

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 96/205 (46%), Gaps = 17/205 (8%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G++Y L+  +  V   I +S L   +       L  +  R+ QLSR D L+GL N S   
Sbjct: 269 GIDYGLMAKIIGVFFLILVSNLFWIL------RLNRANERLKQLSRTDLLTGLPNRSFLN 322

Query: 120 SSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
            +L             LS+V  DID+FKQ+ND +GH VGD+V+   +  L         V
Sbjct: 323 ETLQHELLRAHRNGRPLSVVLLDIDHFKQVNDQYGHLVGDQVLVDFAQLLKKTVRGQDHV 382

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232
           GR GGEEF      S  ++  +L + L  ++               T SAGIA     E 
Sbjct: 383 GRWGGEEFLILCPESDLKQTLVLCDRLHTVVRTHHFATQQQQ----TFSAGIALFTPPEE 438

Query: 233 ISTIIYRADQALYVAKKSGRNRVVC 257
              ++ RAD+ALY AK+SGR++   
Sbjct: 439 ADGMLQRADEALYKAKRSGRDQSCI 463


>gi|297538889|ref|YP_003674658.1| PAS/PAC and GAF sensor-containing diguanylate
            cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297258236|gb|ADI30081.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Methylotenera sp. 301]
          Length = 2044

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 54/214 (25%), Positives = 96/214 (44%), Gaps = 13/214 (6%)

Query: 64   ILVENLSLVIISITISLLLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
            +  ++L++ ++     ++  +++  + +     +   I  L+  D L+GL N    +  L
Sbjct: 1573 VFPQHLTVTVVKDANGIVTNHVATLTDITMNKAAAEEIKHLAFYDSLTGLPNRRLMVDRL 1632

Query: 123  -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                          +++F D+D+FK +ND+ GH VGD ++  ++++LV        V RL
Sbjct: 1633 NQALVFNARTGRDGAVLFLDLDHFKTLNDSLGHDVGDLLLQQVAERLVSCVREGDTVARL 1692

Query: 176  GGEEFAAAALGSSEQ--EAAILANDLRKIIENS--QINISSGPSIHITISAGIAERC-HK 230
            GG+E+       SE   EAA     + + I  S  Q         H T S G+A    H 
Sbjct: 1693 GGDEYVVLLESLSEDAPEAATQVEVIGEKILASLNQAYQLGQHEYHCTPSIGVALFSNHN 1752

Query: 231  EPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            +    ++  AD A+Y AKK+GRN +  F      
Sbjct: 1753 QSQEELLKHADIAMYQAKKAGRNTIRFFDPKMQE 1786


>gi|153835713|ref|ZP_01988380.1| putative sensory box/ggdef family protein [Vibrio harveyi HY01]
 gi|148867646|gb|EDL66934.1| putative sensory box/ggdef family protein [Vibrio harveyi HY01]
          Length = 329

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 61/180 (33%), Positives = 99/180 (55%), Gaps = 9/180 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           S   + +  +   R+ +LS  D L+G+LN  AF++SL          ++ LS +  DID+
Sbjct: 129 SVRDVTKTHLLEKRLKELSETDELTGVLNRRAFLTSLDKAMSSHVQPSQTLSCIMIDIDH 188

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND  GH  GD+VI  ++           F+GRLGGEEFA   + +S  +A  +A  
Sbjct: 189 FKEINDQVGHFSGDQVIHHVAKICQRAIRGSDFIGRLGGEEFAVILVNTSAIQAYDVAER 248

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           +R+ I+N+   +  G  +  T+S G+AE   +    + ++  AD+A+Y +K SGRN+V  
Sbjct: 249 IREAIQNAPCKV-DGIEVSTTVSIGVAEYDEQVSSTTELMVNADKAMYYSKHSGRNQVTL 307


>gi|170516892|gb|ACB15338.1| Dgc2 [Salmonella enterica]
          Length = 331

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 73/275 (26%), Positives = 125/275 (45%), Gaps = 22/275 (8%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYIL 65
           F  IW  H      +   + F  +  S+   +FI ++ F ANI  F +   P   +   L
Sbjct: 55  FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 114

Query: 66  VEN---------LSLVIISITISLLLG----YISGSILKELFISYNRISQLSRIDCLSGL 112
            +N         L+L ++ I I  ++       +  ++ +L      ++ LS +D L+GL
Sbjct: 115 NDNEQGLRILYLLALPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 174

Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +     S    ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 175 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 234

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      +  Q+A   A  +R+ + + +I      S+  ++T+S GIA 
Sbjct: 235 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 294

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                 I   I +AD+ALY AK  GRN ++   D+
Sbjct: 295 LT-DRNIGDAIEKADKALYEAKHLGRNHILVSDDM 328


>gi|241763407|ref|ZP_04761462.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
 gi|241367449|gb|EER61760.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
          Length = 445

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 108/234 (46%), Gaps = 10/234 (4%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS-LVIISITISLLLGYISGS 88
           Y     S      + +  +    +        +  +V  LS  V++  T+SL+L      
Sbjct: 199 YLFAVVSGLHGVFLLVRPLLFRLVAPGTVEDADAGMVALLSQFVVLEATLSLVLMAFGAL 258

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           +L    I+   +  L+ +D L+ + N  AF++ L             L ++  D+D+FK+
Sbjct: 259 MLTNEHITRE-LRHLAEVDPLTNVFNRRAFLTLLEKAISNAQRTQSGLPVLVIDLDHFKK 317

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH  GD+V+                +GRLGGEEFA     +S + +  +A  LR 
Sbjct: 318 INDTWGHQSGDEVLRHFVALANGCLRKEDVMGRLGGEEFAIFLPNASSEGSQAVAERLRA 377

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++ +       GP I +T+S G+ +    E    ++ RAD+A+Y AK+ GRNRV
Sbjct: 378 LVAHHPAMTGRGP-IALTVSIGVTQYGGGETSDFVLQRADEAMYRAKERGRNRV 430


>gi|91780085|ref|YP_555292.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia xenovorans LB400]
 gi|91692745|gb|ABE35942.1| Putative diguanylate cyclase(GGDEF)/ phosphodiesterase(EAL) with
           PAS/PAC and GAF sensors [Burkholderia xenovorans LB400]
          Length = 847

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 10/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           ++L E   +  RI QL+  D L+GL N + F +              +L++VF D+D+FK
Sbjct: 400 ALLLEREKARMRIHQLAFHDTLTGLPNRNMFETQAQQLLNDARRTERELALVFIDLDHFK 459

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND  GH  GD+V+     +   V      +GRL G+EF A        +A  +   L 
Sbjct: 460 RVNDTRGHATGDEVLCETGRRFKSVLRDGDLLGRLAGDEFVAILPHCGVHQATGIVERL- 518

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +   +   + +G  IH + S GIA      E + T++ +AD A+Y AK  GR     F 
Sbjct: 519 -LAATAPPVVVAGAPIHASASIGIAMYPADGEHVPTLLRQADIAMYHAKARGRGHFCFFR 577

Query: 260 DIENN 264
           +  + 
Sbjct: 578 EEMSR 582


>gi|311693741|gb|ADP96614.1| GGDEF domain protein [marine bacterium HP15]
          Length = 346

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 12/233 (5%)

Query: 31  FSIFFSIFIATVIFIANIFLFYI-GLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
           ++++  + +       +  ++YI  L P       +V   +L ++    S L  Y    +
Sbjct: 113 WAVYALLTLWGYYVALDALMWYIEPLQPIPQTALNIVHLFNLSVVFAMFSYLASYYLSMV 172

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           +     +  ++ +++  D L+GL N           +S        +  +  D+D+FK I
Sbjct: 173 VS----AQRKLREMATTDSLTGLFNRRHMTYLAEKEVSRFRRSGHPVGFLLLDVDHFKSI 228

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH  GD+V+  ++D +         +GR GGEEF      ++  +A   A  +RK 
Sbjct: 229 NDAFGHEAGDRVLGCVADVIREELRAQDLIGRWGGEEFLVILPDTNADKAQASAERIRKA 288

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                     G  I +TIS G++E    E +S  + RAD+ALY  K  GRNRV
Sbjct: 289 FLARDWRAVIGGDIDVTISIGVSELRTGEDLSAAVSRADEALYRGKTGGRNRV 341


>gi|71736520|ref|YP_273494.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71557073|gb|AAZ36284.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 459

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 60/183 (32%), Positives = 93/183 (50%), Gaps = 12/183 (6%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           +  Y+S    +        ++ +++  D L+GL N  A   +L           +  S++
Sbjct: 271 ITHYVSISQDVTTRLGREQKLLEIAHSDPLTGLNNRRAAEHTLERLIDTARISGKPFSLI 330

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK +ND +GHP GD+V+  ++  L           R GGEEF      SS   A
Sbjct: 331 IGDIDHFKSVNDRYGHPAGDRVLTSVAVILKQRIRLQDVAARWGGEEFLILVPDSSLDHA 390

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           A LA+ +RK +E+  I      +  +TIS G+A+    E  +++I RAD+ALY AK+ GR
Sbjct: 391 AELADRIRKGVEDLLIP----NTGSVTISLGVAQLSPGETAASLIQRADKALYQAKRRGR 446

Query: 253 NRV 255
           NRV
Sbjct: 447 NRV 449


>gi|192291857|ref|YP_001992462.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
 gi|192285606|gb|ACF01987.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
          Length = 449

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 59/228 (25%), Positives = 101/228 (44%), Gaps = 14/228 (6%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
           I  +  +   +   + L+P   L Y+ +  L + I    ++L+L   +  +L  LF+S  
Sbjct: 168 ITLIYLLGTPYSVAMVLSP---LPYMYIVGLLVPIWGFGMALVLLE-NYEVLLNLFLSER 223

Query: 99  RISQLSRIDCLSGLLNH---SAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +  +L+  D L+GL N          L      S    L++   D+D FK  ND FGH  
Sbjct: 224 KNRRLANYDSLTGLPNRVMKRQRFERLLRGADASAAAPLTVFCLDLDGFKSANDRFGHAA 283

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  ++++L         V R+GG+EF     G+   +AA +A  +   I      +
Sbjct: 284 GDAVLVSVAERLRSSVREQDQVFRVGGDEFVVLLPGTRTDDAAPVAQRIIAAIAE-PFEL 342

Query: 211 SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +    + I +S G A        +  ++  AD A+Y AK+ G+ R V 
Sbjct: 343 AGHGRLDIGVSIGAATFPTDGSTVDDLLRAADIAMYEAKRQGKGRFVA 390


>gi|85716309|ref|ZP_01047282.1| diguanylate cyclase [Nitrobacter sp. Nb-311A]
 gi|85696825|gb|EAQ34710.1| diguanylate cyclase [Nitrobacter sp. Nb-311A]
          Length = 354

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 63/193 (32%), Positives = 98/193 (50%), Gaps = 11/193 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           +S + +  L  S   I   S  D L+GL N   F  ++        S  E LS++ FDID
Sbjct: 158 LSKTEIHNLQHSLEAIRAESMTDPLTGLGNRKYFDRAVADAVALAASEGEPLSLLMFDID 217

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK  NDN+GH  GD+V+  ++  L           R GGEEFA     ++ ++A  +A+
Sbjct: 218 HFKSFNDNYGHLTGDQVLRLVAMSLKQNIKGQDITARYGGEEFAVVLPSTALKQALTVAD 277

Query: 198 DLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +R+ +   ++   S   I   +TIS G++     +   +++ RAD  LY AK+SGRNR 
Sbjct: 278 HVRRAVMAKELKKKSTGEILGRVTISIGVSMLRPGDTPDSLMERADACLYAAKRSGRNRA 337

Query: 256 VCFSDIE--NNTC 266
           VC +D E  N+  
Sbjct: 338 VCETDPEYFNDAA 350


>gi|300311237|ref|YP_003775329.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1]
 gi|300074022|gb|ADJ63421.1| GGDEF domain containing protein [Herbaspirillum seropedicae SmR1]
          Length = 585

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 7/176 (3%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYF 139
            S+ +E      ++   S  D L+G+LN  AF +           Y  +L++V FDID+F
Sbjct: 396 NSLAREREALITQLQTSSNTDFLTGVLNRRAFFTHGQQQMTVAKRYGRELAVVLFDIDHF 455

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQIND++GH  GD ++  ++  +  +      + R GGEEF      SS  +AA  +  L
Sbjct: 456 KQINDSYGHQAGDAILRGVAQSVSQLLRKVDVLARYGGEEFIILLPESSLLQAAAASEKL 515

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           R  +   +  I  G  I +T S G+A       +  +I +AD ALY AKK GRNRV
Sbjct: 516 RAALAAGEFEIDGGRRIRVTASFGVAAENGGPGLEHLIKQADIALYRAKKLGRNRV 571


>gi|73541438|ref|YP_295958.1| PAS:GGDEF [Ralstonia eutropha JMP134]
 gi|72118851|gb|AAZ61114.1| PAS:GGDEF [Ralstonia eutropha JMP134]
          Length = 476

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 110/234 (47%), Gaps = 13/234 (5%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
            + + + F A+   ++   L Y    P  GL +   +     +   +I L  G+I+   +
Sbjct: 245 LAAYRASFDASAAQLSPWHLEYRVQLPMQGLRWRQGDARPQRLPDGSI-LWHGFIT--DV 301

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQI 142
            E       + +L+ ID L+GL N   F++ + +    L        +++  D+D+FK I
Sbjct: 302 TERKRIEAELQELATIDSLTGLPNRRHFMAQIETRLASLQSGRGAATALMMCDLDHFKSI 361

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH VGD+V+      L          GRLGGEEF     G+  + A  +A  +++ 
Sbjct: 362 NDRWGHGVGDRVLRHFGSILRAHLRPGDMAGRLGGEEFGILLDGADMRGAVGVARQIQQR 421

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTI-IYRADQALYVAKKSGRNRV 255
           I    + I     I +T+S GIA     +  +   + R+D ALY AKKSGRNR+
Sbjct: 422 IAEYPL-IEHEQRIDLTVSIGIALMTAADANAEAPLSRSDLALYRAKKSGRNRI 474


>gi|117918765|ref|YP_867957.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117611097|gb|ABK46551.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 581

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 104/239 (43%), Gaps = 12/239 (5%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           H    YF +   +F+    F     +FY G   F  L    V  + +++ ++ ++L++ Y
Sbjct: 334 HPIAKYFLLGHCLFVG---FSGLAVMFYKGRAEFSYLSSHGV-GVGIMLEALVLALIIAY 389

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDID 137
               +L+E+  S   +   +  D L+ L N   F               + ++++  DID
Sbjct: 390 RI-RLLEEIKASQEELKYQAATDSLTHLFNRRHFHKEAQRIYMQASVTQQPMAVIICDID 448

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK++ND +GH +GD+VI  ++  L         V R GGEEF       S  EA   A 
Sbjct: 449 LFKRVNDKYGHLMGDQVIIDIATTLKQHARKCDIVARYGGEEFIMLLHDVSLTEAHQCAE 508

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +R  +        +  +  +T+S G+A      P+   I  AD ALY AK  GRN V 
Sbjct: 509 RIRSAVAELSFMAETQEAFTVTLSLGVAAVDFVHPLEHAIKLADDALYRAKHQGRNNVQ 567


>gi|158333739|ref|YP_001514911.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158303980|gb|ABW25597.1| diguanylate cyclase (GGDEF domain) [Acaryochloris marina MBIC11017]
          Length = 443

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 109/241 (45%), Gaps = 19/241 (7%)

Query: 34  FFSIFIATVIFIANIFLFYIGLT---PFYGLEYILVENLSLVIISITISLL-------LG 83
             ++     + +A +F + +  +   P   LE   VE L    +S  ISL        L 
Sbjct: 191 MIAMICGLALMLAVVFAYGLTRSITVPLQSLED-GVEKLGKGDLSHRISLAADAEFSHLA 249

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
                +  +L  S   + +L+ +D L+ + N   F   L           +++S++  DI
Sbjct: 250 ATFNLMATKLEQSQQDLYRLATLDGLTEVYNRREFNRWLRVEVEKSQRNTDQVSLIMVDI 309

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FKQ+ND +GH  GD  +  ++  L         V R GGEEFA     ++  ++  +A
Sbjct: 310 DHFKQLNDTYGHQAGDLALCEVAQLLQREVRPGDIVCRYGGEEFAVILPKTNHDDSVAIA 369

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
           + +R  I    I + S   I +T S G+A      +    +I +ADQALY AK SGRNRV
Sbjct: 370 DRIRLAIAEEAIILPSLQQIEMTASLGVATFPGDAQTKEHLIKQADQALYGAKTSGRNRV 429

Query: 256 V 256
            
Sbjct: 430 H 430


>gi|46201635|ref|ZP_00054632.2| COG3706: Response regulator containing a CheY-like receiver domain
           and a GGDEF domain [Magnetospirillum magnetotacticum
           MS-1]
          Length = 477

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 9/177 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           + + E     +++  L+  D L+G LN  AF       +     Y   +S++  DID+FK
Sbjct: 299 TDITERKRMESQLRHLATTDELTGCLNRRAFFVVAEQELERASRYGGSVSVLMIDIDHFK 358

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND  GH VGD+ +   +  +          GRLGGEEFAA    +    A ++A  LR
Sbjct: 359 QVNDRHGHAVGDRALKAATAAIRANLREIDSFGRLGGEEFAAMLPETPLAGALLVAERLR 418

Query: 201 KIIENSQINISSGPS-IHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255
           + +    + +    + + +T S G+AER  +E  +  I+ RAD ALY AK  GRNRV
Sbjct: 419 EAVAAIVLPLGENEAPLRLTTSLGVAERRAEETSLDQILARADTALYRAKAEGRNRV 475


>gi|146305506|ref|YP_001185971.1| diguanylate cyclase [Pseudomonas mendocina ymp]
 gi|145573707|gb|ABP83239.1| periplasmic/7TM domain sensor diguanylate cyclase [Pseudomonas
           mendocina ymp]
          Length = 601

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 111/240 (46%), Gaps = 11/240 (4%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
           F++  S FI          L  I L+      +  ++      + +   +L   ++   L
Sbjct: 365 FALIPSNFITLYAMQIGSGLEMILLSFALAARFNELKRQREAALQLNEQILAKRVTERTL 424

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
             L ++  R+S+L+  D L+GL N +A    L          NE L+++  D+D FK +N
Sbjct: 425 A-LELANQRLSELALQDPLTGLANRTALQQHLEQAIARSQRRNELLAVMLIDLDGFKPVN 483

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKI 202
           D +GH  GD+V+A ++ +L           RLGG+EF        +  +A  LA  + + 
Sbjct: 484 DQYGHGFGDQVLAEVARRLRHYLRDADLPARLGGDEFVVICENVQTAADARDLAKRVLEG 543

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           ++        G ++ +  S GIA    ++  + +I RAD A+Y AK +GRNRV   ++ +
Sbjct: 544 LDT--PIYLEGRAVRVGASIGIALYHGEDDATALIRRADAAMYRAKATGRNRVHLTAEPD 601


>gi|322419612|ref|YP_004198835.1| diguanylate cyclase/phosphodiesterase [Geobacter sp. M18]
 gi|320125999|gb|ADW13559.1| diguanylate cyclase/phosphodiesterase [Geobacter sp. M18]
          Length = 538

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 93/187 (49%), Gaps = 11/187 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           + ++ K   ++  ++  ++  D L+GL N +     L         + +K+++++ D+D+
Sbjct: 78  AKTMTKAAELAIQQMWYMAEHDVLTGLPNRTLLADRLSQSIAFAQRHGKKVALMYLDLDH 137

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAN 197
           FK +ND+ GH VGD+++  ++ +L         V R GG+EF        E Q+A ++A 
Sbjct: 138 FKHVNDSLGHSVGDQLLQSVAKRLRASVRLSDTVSRQGGDEFVVLLNEIDEAQDAVLIAK 197

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            +  I   +  +  S   +H+T+S GI+        + T++  AD A+Y  KK+GRN   
Sbjct: 198 KI--IAAMAPPHFVSDNQLHVTVSIGISIYPDDGRDVETLLRNADTAMYQTKKTGRNHCH 255

Query: 257 CFSDIEN 263
            +    N
Sbjct: 256 LYQPEMN 262


>gi|254248940|ref|ZP_04942260.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
 gi|124875441|gb|EAY65431.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
          Length = 510

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 91/201 (45%), Gaps = 12/201 (5%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYN---RISQLSRIDCLSGLLNHSAFI---- 119
             +  V++    +  + + S ++ +EL    +   ++ +L+  D L+GL N   F     
Sbjct: 300 RAIWTVVLMSLFTAFIAWGSLALSRELKRRQDAEAKLYRLAHTDSLTGLDNRGTFDTVLA 359

Query: 120 ---SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRL 175
                       LS++F D+D+FK  ND +GHP GD V+  ++  L          V R 
Sbjct: 360 KETQRASRSGRPLSVLFVDVDHFKAFNDYYGHPAGDDVLRQVAQSLSRCLRRDSDQVARY 419

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIS 234
           GGEEF      +    AA +A  +R+ I    I         +T+S G A         +
Sbjct: 420 GGEEFVVTLPDTDGPGAATVAEGIRRAISELGIEHVKSQYGRVTVSIGTATADDGRMNAA 479

Query: 235 TIIYRADQALYVAKKSGRNRV 255
           T++ RAD+ALY AK  GRNRV
Sbjct: 480 TLLRRADEALYRAKSGGRNRV 500


>gi|209546934|ref|YP_002278852.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209538178|gb|ACI58112.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 730

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 11/207 (5%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           + IL+E   + +I     ++        + EL +S  +I Q++  D L+ L N S F   
Sbjct: 251 QTILLETRKVPVIDAAGEVVGVLGVARDVTELNVSRQKIHQMAFYDPLTSLPNRSLFNDR 310

Query: 122 LGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L           ++  ++  DID+FK +ND  GHPVGD ++   + +L         V R
Sbjct: 311 LRQMITSAGSRGQRAGLMLIDIDHFKVVNDTMGHPVGDDLLCQAAARLNASVRDHDTVAR 370

Query: 175 LGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-P 232
           LGG+EFA      S+  +   +AN++          +  G  + ++ S GIA        
Sbjct: 371 LGGDEFAILLPDISQGDDLGRIANNILDKFRER--FLLDGQEVFVSCSVGIALYPDDSAD 428

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFS 259
            + ++  AD A+Y+AK+SGRN    +S
Sbjct: 429 ANDLVKYADSAMYLAKRSGRNSFRFYS 455


>gi|39997606|ref|NP_953557.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
 gi|39984498|gb|AAR35884.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
          Length = 873

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 11/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + +       +   +  D L+GL N S     L           + ++++ FD+D FK 
Sbjct: 422 DITDRRRFQEELLHQATHDTLTGLPNRSLLEDRLNQAVAGARRRGQMVALLMFDLDNFKV 481

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLR 200
           +ND  GH  GD+++  ++ ++           RLGG+EF       +   +A  +A   R
Sbjct: 482 VNDTLGHTAGDQLLRSVAARIRSFVRNCDTFARLGGDEFVIVLTNLTRMDDAVTVAESFR 541

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++         G  I IT S GI+      + +  +I +AD A+Y  K+SGRN    F+
Sbjct: 542 NLLA--MPFFLGGREIFITASMGISLFPDDGDTMEALIKKADTAMYHIKESGRNSFQFFA 599

Query: 260 DIENN 264
           +  N 
Sbjct: 600 EEMNQ 604


>gi|85858051|ref|YP_460253.1| sensory box GGDEF family protein [Syntrophus aciditrophicus SB]
 gi|85721142|gb|ABC76085.1| sensory box ggdef family protein [Syntrophus aciditrophicus SB]
          Length = 354

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 11/186 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           + Y+    + E     + I  L+  D L+GL N   F   L         Y + ++++  
Sbjct: 155 ILYMVWRDITERKRIEDAIRHLAYHDVLTGLPNRILFTDRLVLAIAQAKRYRKTMAVMML 214

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAA 193
           D+D FK IND  GH +GD ++  +  +L         V RLGG+EF        +   + 
Sbjct: 215 DLDRFKTINDTAGHHIGDLLLQSVGRRLTHTLREEDTVARLGGDEFMILLPEIKQALSSF 274

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252
            +A+ +    +  +  I  G  +  + S GIA      E + T++  AD A+Y AK +GR
Sbjct: 275 RVADKIVSAFK--EPFICEGNELSTSASIGIAVYPDDGEDMDTLMKHADTAMYQAKSTGR 332

Query: 253 NRVVCF 258
           N    F
Sbjct: 333 NTYCRF 338


>gi|325295303|ref|YP_004281817.1| diguanylate cyclase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065751|gb|ADY73758.1| diguanylate cyclase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 361

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 88/177 (49%), Gaps = 8/177 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           S   +K+L        + + ID L+ + N ++F  ++          N   +++  DID 
Sbjct: 176 SNQQIKKLRKELEESKKEANIDFLTRVANRASFDRAISDMVKDFYERNYPFALLMIDIDN 235

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQIND +GH  GD V+  L+  +         V R GGEEFA    G +  +A  +A  
Sbjct: 236 FKQINDTYGHQAGDHVLRELARTIKEQLRARDVVARYGGEEFAILIPGVTFAQAVRIAER 295

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +RK IE           I +T S G+A   +    + II +ADQALY+AK++G+N++
Sbjct: 296 IRKNIEKHLFRYKDTV-IPVTASIGVAVMRNGLDETGIIEKADQALYLAKRNGKNQI 351


>gi|34558149|ref|NP_907964.1| signal transduction response regulator [Wolinella succinogenes DSM
           1740]
 gi|34483868|emb|CAE10864.1| SIGNAL TRANSDUCTION RESPONSE REGULATOR-CheY like receiver and GGDEF
           domain [Wolinella succinogenes]
          Length = 501

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 97/222 (43%), Gaps = 13/222 (5%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE--LFISYNRISQLS 104
           NI  +    +  +G+   +   L L+I+ I       Y +   L E  L      +  LS
Sbjct: 284 NINYYMNQASRLWGVALAIGGVLWLLILGILRFGYHRYEARMRLYEAWLLEKNQTLEHLS 343

Query: 105 RIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
             D L+ + N  A    +           +  S+V FDID FK++ND +GH  GD+V+  
Sbjct: 344 FFDHLTQIANRRALEERIRKSISRFELERQSFSMVIFDIDDFKRVNDTYGHGAGDEVLKQ 403

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           ++             GR GGEEF      +S   A  +A  LR+ I     +    P   
Sbjct: 404 IARLAKESIRGEDMAGRWGGEEFVIYLHHASISSAHEIAERLRQKIARHAFD----PRFK 459

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +T S G++E        ++I RAD+ALY AK+ G+N+ +  S
Sbjct: 460 VTCSFGVSEFREGMDFDSLISRADEALYEAKRQGKNQTILAS 501


>gi|221068368|ref|ZP_03544473.1| diguanylate cyclase [Comamonas testosteroni KF-1]
 gi|220713391|gb|EED68759.1| diguanylate cyclase [Comamonas testosteroni KF-1]
          Length = 616

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 15/222 (6%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLLLGYI-----SGSILKELFISYNRISQLSR 105
           F I +   +   Y +    +L+I S+  +L + +I      G  LK    + + ++ L+R
Sbjct: 389 FIIMVAKAHSDIYAVWRQRALLIASVMGTLTMAFIGLSFAFGVQLKRRMRAESELALLAR 448

Query: 106 IDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+GL N                  +   S++F DID+FK  ND +GH  GD V+A +
Sbjct: 449 TDGLTGLNNRRKLDEIIEHEWHRAKRSHSAFSLLFVDIDWFKAYNDTYGHQAGDMVLATV 508

Query: 159 SDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +  +      P     R GGEEF      ++    A++A ++R+ +    I  +      
Sbjct: 509 ARCIANNIRRPEDSAARYGGEEFIVVLPDTTLDGGALIAENIREAVSELAIAHTGSEFGC 568

Query: 218 ITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVC 257
           IT+S G A     + +    ++  AD+ALY AK +GRN+VV 
Sbjct: 569 ITVSIGCAAWVPGKDLDVQEVLRSADKALYGAKMTGRNKVVL 610


>gi|307824789|ref|ZP_07655012.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Methylobacter tundripaludum SV96]
 gi|307734147|gb|EFO05001.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Methylobacter tundripaludum SV96]
          Length = 426

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 90/179 (50%), Gaps = 10/179 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS--------IVFFDIDYFK 140
            + E      ++ +L+  D L+GL N   F+  L     K++        ++  D+D+FK
Sbjct: 247 DITERKEMEAQLQKLASTDPLTGLFNRRVFLEKLELERAKVARLPHYSAVLLMLDLDFFK 306

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD V+   ++             RLGGEEFA    G+ + +A I+A  LR
Sbjct: 307 RVNDAYGHATGDIVLKVFAEIARNTSRAIDIAARLGGEEFAILLSGADKNDALIMAERLR 366

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           + +  + I+  +GP + IT+S G A     +     +++RAD ALY AK  GRN+   F
Sbjct: 367 EQVAKTVIDHDAGP-VQITVSIGAATLSVDDINGEAVLHRADVALYEAKDRGRNQTCWF 424


>gi|209525930|ref|ZP_03274464.1| diguanylate cyclase with PAS/PAC and GAF sensors [Arthrospira maxima
            CS-328]
 gi|209493607|gb|EDZ93928.1| diguanylate cyclase with PAS/PAC and GAF sensors [Arthrospira maxima
            CS-328]
          Length = 1041

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 99/202 (49%), Gaps = 12/202 (5%)

Query: 76   ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEK 128
            +T  L +    G +  +L I++  + ++  +D L+G+ N   F          L    + 
Sbjct: 839  LTEQLAIAIQQGELYHQLQIAHEELEKVYNLDSLTGIANRRHFDHILQQEWLQLQREKQP 898

Query: 129  LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGS 187
            LSI+  DIDYFK  ND +GH  GDK +  +++ +          V R GGEEF      +
Sbjct: 899  LSIIMCDIDYFKCYNDTYGHIAGDKCLQRVANAIKNSLKRPRDLVARYGGEEFVILLPNT 958

Query: 188  SEQEAAILANDLRKIIENSQINISSGPS--IHITISAGIAE--RCHKEPISTIIYRADQA 243
              +    ++  +++ +    +   + P+    +T+S GIA     HK+  + +++ AD+A
Sbjct: 959  PIEGGLEISQQIQEAVFKLNMQPGAIPANFQRVTVSMGIASKIPSHKQSPTQLLFDADRA 1018

Query: 244  LYVAKKSGRNRVVCFSDIENNT 265
            LY AK +GRN+ V  +  E+N+
Sbjct: 1019 LYQAKNNGRNQYVIANYPEHNS 1040


>gi|117924807|ref|YP_865424.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Magnetococcus sp. MC-1]
 gi|117608563|gb|ABK44018.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Magnetococcus sp. MC-1]
          Length = 571

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 12/203 (5%)

Query: 67  ENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-- 123
           E LSL II      +  YI   S +    I+  ++   +  D L+GL N S     L   
Sbjct: 363 EWLSLSIIRGENQQISHYIGLFSDITTRKIAEEKLKHQAHHDPLTGLPNRSLLEDRLQQA 422

Query: 124 -----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                 Y  K+++++ D+D+FK +NDN+GH  GD V+  +S ++           R+GG+
Sbjct: 423 VSKARRYEGKIAVLYIDLDHFKPVNDNYGHEAGDAVLREISARIRYELRQSDTAARVGGD 482

Query: 179 EFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTI 236
           EF A      E+   + +A  L   I+   +N  +  S  +  S GI+    H   I+ +
Sbjct: 483 EFVAVLTEIREEHLVMGVAQKLIHAIQK-PVNFGN-ESFQVGCSIGISLYPIHGNSITKL 540

Query: 237 IYRADQALYVAKKSGRNRVVCFS 259
           +  AD A+Y AK+ GRNR    +
Sbjct: 541 LKSADTAMYRAKQEGRNRFCVAT 563


>gi|224827054|ref|ZP_03700151.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
 gi|224600720|gb|EEG06906.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
          Length = 887

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 9/186 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQ 141
            + +L  S  ++ +L+  D L+GL N    ++ L    E        L+++F D+D FK 
Sbjct: 440 DISQLKDSQEQLERLAHYDPLTGLPNRHLALARLEHALERARRHAFPLAVMFIDLDRFKT 499

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD+++  ++ +L         + RLGG+EF      +  Q+ A +A+ L K
Sbjct: 500 INDSLGHQAGDELLVAIAQRLHQRLRQEDTLARLGGDEFLVVIEEAPVQQVASIAHALLK 559

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +++      S G   ++  S GI+         S +I  AD A+Y+AK  G N    +++
Sbjct: 560 VVDQ-PFGFSGGGEAYVGASIGISLYPGDGRSASELIRNADAAMYLAKAQGSNAYRFYTE 618

Query: 261 IENNTC 266
                 
Sbjct: 619 SLTRAA 624


>gi|158333773|ref|YP_001514945.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acaryochloris marina MBIC11017]
 gi|158304014|gb|ABW25631.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Acaryochloris marina MBIC11017]
          Length = 1197

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 12/181 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQIN 143
           E   +   +   +  D L+ L N   F+  L           +E  +++F D+D FK IN
Sbjct: 459 ERKQTEQALLHDALHDGLTQLPNRVLFMDRLEQACRSFQRHPDEIFAVLFLDLDRFKIIN 518

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKI 202
           D  GH VGD+++  ++ +L         V RLGG+EF          ++A  +++ + + 
Sbjct: 519 DTLGHMVGDQLLVAVAHRLQTCLRPEDTVARLGGDEFTLLLPNIDQAEDAMHISDRILQS 578

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           ++  +        + IT+S GIA   + E     ++  AD ALY AK +G+     FS  
Sbjct: 579 LK--EPFTLDHTEVFITVSIGIAMSGNPEQKPDDLLRHADIALYRAKANGKGCYAVFSPE 636

Query: 262 E 262
            
Sbjct: 637 M 637


>gi|308051420|ref|YP_003914986.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
 gi|307633610|gb|ADN77912.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
          Length = 352

 Score =  201 bits (513), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 64/250 (25%), Positives = 116/250 (46%), Gaps = 13/250 (5%)

Query: 19  LESFSPHTFMIYFSIF--FSIFIATVIFIA--NIFLFYIGLTPFYGLEYILVENLSLVII 74
           L  FS +   ++ S+    S   A ++ +A   + L +     ++    +LV  L L   
Sbjct: 100 LPVFSAYVMFVFASVLGLHSADRALLMCLAPPTLVLLWPSGVLWWQELAVLVITLYLGFA 159

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNE 127
           +     L   +S + L++      +   LS  D L+GL N   F   L            
Sbjct: 160 ARRQINLWMRMSQAQLRQNKRLLEKFRTLSNQDPLTGLGNRRCFEQRLAQSVSEAKRSKN 219

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALG 186
            LS++  D+DYFK+ ND+FGH  GD+ +  ++  L          + R+GGEEF      
Sbjct: 220 ALSLILLDVDYFKRYNDHFGHQAGDECLRTVAQILRLSSRRQSDTLARIGGEEFVLLLPN 279

Query: 187 SSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
           + ++ A  LA +++  +  + ++   SG S  +T+S GIA+         ++++AD+A+Y
Sbjct: 280 TDKRGAQRLAEEIQSRLLQADLDHPQSGISKRVTLSQGIAQWHPGLSGDALMHQADKAMY 339

Query: 246 VAKKSGRNRV 255
            +K +GRN +
Sbjct: 340 ESKLAGRNTI 349


>gi|291566707|dbj|BAI88979.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 501

 Score =  201 bits (513), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 90/185 (48%), Gaps = 14/185 (7%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
           L  +   + +L+  D L+ + N   F   L           E ++++  D+DYFK  ND 
Sbjct: 297 LKKTNQELQRLALYDDLTQVANRRRFNEYLAYNWHRCSREQEPIALILCDVDYFKPYNDT 356

Query: 146 FGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           FGH  GD  +  ++  +   +  +   V R GGEEFA     +    A  +A  +RK +E
Sbjct: 357 FGHQAGDDCLHKIARAISGAIQRSVDLVARYGGEEFAIILPNTPINGAVKVAERIRKEVE 416

Query: 205 NSQINISSGPSI-HITISAGIAER-CHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           N ++      S  ++T+S G+A +  H E  + ++I +AD+ALY AK  GRN  V     
Sbjct: 417 NLRVPHPGSQSSDYVTVSLGVACKIPHSELSVDSLIAQADEALYQAKNQGRNCTVI---A 473

Query: 262 ENNTC 266
           E+ +C
Sbjct: 474 ESPSC 478


>gi|75910622|ref|YP_324918.1| diguanylate cyclase/phosphodiesterase with FHA and GAF sensor
           [Anabaena variabilis ATCC 29413]
 gi|75704347|gb|ABA24023.1| diguanylate cyclase/phosphodiesterase with FHA and GAF sensor
           [Anabaena variabilis ATCC 29413]
          Length = 880

 Score =  201 bits (513), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 88/192 (45%), Gaps = 13/192 (6%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKL 129
           T+  +   ISG+  ++      +I   +  D L+GL N   F   L           + L
Sbjct: 424 TLLTMAASISGAWQRQ--QVEEKIRYQALHDLLTGLPNRLLFNELLAKALANASRSQQSL 481

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS- 188
           +++F D+D FK IND  GH +GD+++  ++ +L     +   V R GG+EF       S 
Sbjct: 482 AVMFLDLDRFKVINDTLGHSLGDRLLKSVAQRLCDCLRSGDTVSRWGGDEFTILLPHISY 541

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVA 247
            +E    A  + K +E  ++    G  ++++ S GIA   H       +I  AD ALY A
Sbjct: 542 IEEVTQAAYRILKALE--EVFHLDGHELYVSASLGIALLDHHSPDAEALIKHADAALYHA 599

Query: 248 KKSGRNRVVCFS 259
           K  GRN    ++
Sbjct: 600 KDEGRNNYQFYT 611


>gi|205359321|ref|ZP_02668878.2| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205337060|gb|EDZ23824.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
          Length = 308

 Score =  201 bits (513), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 75/275 (27%), Positives = 125/275 (45%), Gaps = 22/275 (8%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58
           F  IW  H      +   + F  +  S+   +FI ++ F ANI  F +  L P       
Sbjct: 32  FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 91

Query: 59  ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112
                GL  + +  L +V I+I   +   Y   +  ++ +L      ++ LS +D L+GL
Sbjct: 92  NGNEQGLRILYLLALPMVGIAIQHVIQKSYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 151

Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +     S    ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 152 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 211

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      +  Q+A   A  +R+ + + +I      S+  ++T+S GIA 
Sbjct: 212 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 271

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                 I   I +AD+ALY AK  GRN ++   D+
Sbjct: 272 LT-DRNIGDAIEKADKALYEAKHLGRNHILVSDDM 305


>gi|149195064|ref|ZP_01872156.1| diguanylate cyclase (GGDEF domain) [Caminibacter mediatlanticus
           TB-2]
 gi|149134777|gb|EDM23261.1| diguanylate cyclase (GGDEF domain) [Caminibacter mediatlanticus
           TB-2]
          Length = 750

 Score =  201 bits (513), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 60/176 (34%), Positives = 87/176 (49%), Gaps = 12/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           L ++     ++  ++  D L+ + N + F       I     Y   LS++F DIDYFK+I
Sbjct: 580 LSKIKKLSKQLETMAFYDKLTNIYNRAKFKNILKEFIEYSKRYKTPLSLIFLDIDYFKKI 639

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           NDNFGH  GD V+  +     +        GR GGEEF      +    A I+A  +R  
Sbjct: 640 NDNFGHEKGDLVLKEMVKVAKLSLRESDVFGRWGGEEFLILLPNTDINGAKIVAEKIRDA 699

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE+   +      I +T+S G+ +    + I + + RAD ALY AKK GRNRVV F
Sbjct: 700 IESHDFD-----GIKVTVSLGVTQLKEDDTIESFVNRADIALYQAKKEGRNRVVVF 750


>gi|114569827|ref|YP_756507.1| response regulator receiver modulated diguanylate cyclase
           [Maricaulis maris MCS10]
 gi|114340289|gb|ABI65569.1| response regulator receiver modulated diguanylate cyclase
           [Maricaulis maris MCS10]
          Length = 454

 Score =  201 bits (513), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 89/177 (50%), Gaps = 7/177 (3%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           +L    +   +++  D L+GL N     S L             +S++  DID+FK IND
Sbjct: 276 QLRSHLDEGMEMAVTDALTGLHNRRYISSRLRQAMDSASNGGAPVSLLLADIDHFKHIND 335

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+   S +L           R GGEEF     G+   EA I A  LR  I+
Sbjct: 336 TYGHDAGDRVLRDFSSRLQTGLRALDLAARYGGEEFVVVMPGAGLAEARIAAERLRSSID 395

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            S  ++S G S+ +T+S GIA+    E +  ++ RAD+ALY AK +GRN+V    + 
Sbjct: 396 GSGFDLSDGTSVPVTVSIGIAQAHRGEALDALLRRADEALYAAKTAGRNQVQAADNA 452


>gi|296133232|ref|YP_003640479.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermincola sp. JR]
 gi|296031810|gb|ADG82578.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermincola potens JR]
          Length = 798

 Score =  201 bits (513), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 13/195 (6%)

Query: 82  LGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVF 133
           L  IS G  + +   +   I+ ++  D L+ L N + F   L           + L+++F
Sbjct: 322 LAIISMGIDITDRKRAEEIINHMAYHDPLTDLPNRALFNDRLKLALAHAKRNKQLLAVMF 381

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK IND  GH +GD+V+  ++ +L         V R+GG+EF       ++++  
Sbjct: 382 IDLDRFKLINDTLGHAMGDRVLKDVAQRLTECLREGDTVARIGGDEFILIFPQIAKEQ-- 439

Query: 194 ILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSG 251
            +A    KIIE  +          H+T S G+A   H  +   T++  AD ALY+AK+ G
Sbjct: 440 DVAKIALKIIETMKRPFKVEMQEFHLTTSIGVAIYPHDGQDAETLVKNADSALYLAKEQG 499

Query: 252 RNRVVCFSDIENNTC 266
            N    ++   N+  
Sbjct: 500 -NTYQLYTPSMNDKA 513


>gi|15595772|ref|NP_249266.1| hypothetical protein PA0575 [Pseudomonas aeruginosa PAO1]
 gi|9946445|gb|AAG03964.1|AE004493_9 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 1245

 Score =  201 bits (513), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + +  L  +  R+   +  D L+GL N   F S L          +   +++F D+D FK
Sbjct: 792 ADISTLKYAQARLDYQAHHDPLTGLPNRLLFESRLNHALDEAREESRPGAVLFIDLDRFK 851

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
            IND+ GHP+GD ++  ++++L         V RLGG+EF     G  ++ +A  +A  L
Sbjct: 852 HINDSLGHPIGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARKL 911

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 +    + G    ++ S GIA      +   T++  AD A+Y AK  GR+R+  +
Sbjct: 912 LNAF--TAPFQADGHEFFVSASVGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSRIEYY 969

Query: 259 S 259
           +
Sbjct: 970 T 970


>gi|313111782|ref|ZP_07797575.1| hypothetical protein PA39016_004010078 [Pseudomonas aeruginosa
           39016]
 gi|310884077|gb|EFQ42671.1| hypothetical protein PA39016_004010078 [Pseudomonas aeruginosa
           39016]
          Length = 1245

 Score =  201 bits (513), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + +  L  +  R+   +  D L+GL N   F S L          +   +++F D+D FK
Sbjct: 792 ADISTLKYAQARLDYQAHHDPLTGLPNRLLFESRLNHALDEAREESRPGAVLFIDLDRFK 851

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
            IND+ GHP+GD ++  ++++L         V RLGG+EF     G  ++ +A  +A  L
Sbjct: 852 HINDSLGHPIGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARKL 911

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 +    + G    ++ S GIA      +   T++  AD A+Y AK  GR+R+  +
Sbjct: 912 LNAF--TAPFQADGHEFFVSASVGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSRIEYY 969

Query: 259 S 259
           +
Sbjct: 970 T 970


>gi|237799945|ref|ZP_04588406.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331022800|gb|EGI02857.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 421

 Score =  201 bits (513), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 12/183 (6%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           L  Y+S    +        ++ +++  D L+GL N  +   +L              S++
Sbjct: 233 LTHYVSISQDVTTRLGREQKLLEIAHSDTLTGLDNRRSAEHTLERMISTAWITGNPFSLI 292

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK++ND  GHP GD  +  ++        T     R GGEEF      SS ++A
Sbjct: 293 ICDIDHFKRVNDQHGHPAGDAALKSVASMFKHQIRTHDVAARWGGEEFLIHVPDSSLKQA 352

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             LA  +RK +E  +I      +  +TIS G+A     E  +++I RAD+ALY AK+ GR
Sbjct: 353 VELAERVRKSVEGLEIP----ETGSVTISLGVAALDPGETAASLIQRADKALYQAKRLGR 408

Query: 253 NRV 255
           NRV
Sbjct: 409 NRV 411


>gi|218781592|ref|YP_002432910.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762976|gb|ACL05442.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 308

 Score =  201 bits (513), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 55/181 (30%), Positives = 87/181 (48%), Gaps = 7/181 (3%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
           +    + KE      ++ +LS  D L+ L N   F   L         Y   LS++FFD+
Sbjct: 123 FRERRLWKEREALMEQLKKLSITDGLTNLYNRRHFYRQLSTEANRAERYGRVLSLLFFDV 182

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+ ND +GH  GD+ +  ++            + R GGEEFA     +S ++A I  
Sbjct: 183 DSFKKFNDTYGHLAGDEALKSIARATENCLRVADSIFRYGGEEFAVVLPETSGEQAIIAG 242

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR  I+  ++ IS   +  +T+S G+ E    E +   + RAD A+Y +K+SG N+V 
Sbjct: 243 QRLRNDIDQLRLPISEEETAKVTVSIGVTEFSPGEEMERCVKRADMAMYNSKRSGGNQVQ 302

Query: 257 C 257
            
Sbjct: 303 F 303


>gi|291613091|ref|YP_003523248.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1]
 gi|291583203|gb|ADE10861.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1]
          Length = 553

 Score =  201 bits (513), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 89/178 (50%), Gaps = 8/178 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           + + ++EL     +IS+L R D L+G LN      +L             +S+   DID 
Sbjct: 374 AETRIRELENELEQISELVREDQLTGALNRRGLDETLDRELKRSDRSKTPVSVALLDIDN 433

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND+ GH  GD+ +  L+  +         VGR GGEEF      +  + A      
Sbjct: 434 FKQLNDSLGHLAGDRALIHLTKVIKETLRPADTVGRYGGEEFLIVLPDTGLKAAVEAMQR 493

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           L++ +   +  + +   I +T SAG+A R   E    +I RAD+A+Y AK++G+NRV+
Sbjct: 494 LQRDL-TKKFFLHNNERILVTFSAGVALRGEDEEAEDLIGRADKAMYQAKQAGKNRVM 550


>gi|114047368|ref|YP_737918.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113888810|gb|ABI42861.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 342

 Score =  201 bits (513), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 58/180 (32%), Positives = 84/180 (46%), Gaps = 10/180 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
           G  ++ L      +S  +  D L+ L N  A+       I        + S++  DID F
Sbjct: 162 GQEVQNLKAEMENLSLAAMTDQLTSLHNRRAYEIAIQDHIHRAEEQQTRCSLLLIDIDRF 221

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND +GH VGDKV+A+++  L        FV R GGEEF      +   +A  +A  L
Sbjct: 222 KLFNDTYGHQVGDKVLAYVALALKQCVRGDDFVARYGGEEFVVLLPNTHFHDALQVAETL 281

Query: 200 RKIIENSQINISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R+ I   ++ I     +    IT+S G+A     +   T+  RAD+ALY AK  GRN V 
Sbjct: 282 RERISERRLAIGKDKKLSLGAITVSIGLASLQKGDDAETLFSRADKALYEAKSDGRNCVR 341


>gi|218889316|ref|YP_002438180.1| hypothetical protein PLES_05721 [Pseudomonas aeruginosa LESB58]
 gi|218769539|emb|CAW25299.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
          Length = 1245

 Score =  201 bits (513), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + +  L  +  R+   +  D L+GL N   F S L          +   +++F D+D FK
Sbjct: 792 ADISTLKYAQARLDYQAHHDPLTGLPNRLLFESRLNHALDEAREESRPGAVLFIDLDRFK 851

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
            IND+ GHP+GD ++  ++++L         V RLGG+EF     G  ++ +A  +A  L
Sbjct: 852 HINDSLGHPIGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARKL 911

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 +    + G    ++ S GIA      +   T++  AD A+Y AK  GR+R+  +
Sbjct: 912 LNAF--TAPFQADGHEFFVSASVGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSRIEYY 969

Query: 259 S 259
           +
Sbjct: 970 T 970


>gi|307823577|ref|ZP_07653806.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307735562|gb|EFO06410.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 882

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           S S +     +   I QL+  D L+ L N       L           ++L+++  D+D 
Sbjct: 435 SFSDITSRKAAEEEIKQLAFYDPLTQLPNRRLLQERLKHSIDVERRDGKRLALLMLDLDR 494

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILAN 197
           FK +ND+ GH  GD+++  ++ ++         V RLGG+EF       +  ++AA +A 
Sbjct: 495 FKAVNDSLGHLAGDELLQQVAVRISARLRDVDMVARLGGDEFVVLLEDIAHAEDAARVAA 554

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++   +      ++    + I  S GI+    H      ++  AD ALY AK  GR    
Sbjct: 555 EII-FVLGKPFQLTQSSDVQIGASIGISLYPEHGASYEMLMDHADAALYQAKDQGRGCYA 613

Query: 257 CFSDIE 262
            FS+ +
Sbjct: 614 YFSEDQ 619


>gi|326318686|ref|YP_004236358.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375522|gb|ADX47791.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 568

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 63/219 (28%), Positives = 104/219 (47%), Gaps = 25/219 (11%)

Query: 60  GLEYILVENLSLVIISITISLL-----LGYISGSILKE-------LFISYNRISQLSRID 107
           G + + V  L+    S+T SLL     L  ++ S+  +       L  +   +  L+  D
Sbjct: 350 GTDTLEVAQLNRSFQSMTASLLEREQELSRLNTSLENQVRERTLALHQANQELENLAVRD 409

Query: 108 CLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+GL N   F  +L +Y         + +++  D D+FK++ND  GH  GD V+  L+ 
Sbjct: 410 PLTGLYNRRRFDEALQAYSARCRELGHRFALMIVDADHFKRVNDTHGHQTGDAVLRHLAG 469

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +     +  FV R GGEEF          +E  ++A  +R  + ++          H+T
Sbjct: 470 VITGCMRSTDFVARFGGEEFVVLMPEPRDREEGRLVAEKIRLAVGHTPFPGVG----HLT 525

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A      EP+++I+ RAD+ALY AK  GR+RV  
Sbjct: 526 VSIGLAFCHGGGEPLASILERADKALYQAKGEGRDRVCV 564


>gi|262377167|ref|ZP_06070392.1| LOW QUALITY PROTEIN: GGDEF family protein [Acinetobacter lwoffii
           SH145]
 gi|262307905|gb|EEY89043.1| LOW QUALITY PROTEIN: GGDEF family protein [Acinetobacter lwoffii
           SH145]
          Length = 329

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 12/244 (4%)

Query: 30  YFSIFFSIFIATVIFIANI----FLFYIGLTPFYGLEYILVEN----LSLVIISITISLL 81
           + ++ +S+ I   IF+       F   +  +P + ++  L  N    LS++   + I  +
Sbjct: 78  HRTLVYSMLIPASIFLGGCAYLSFSHQLPYSPLFNIDDKLFYNGFWLLSMLYFILPILAV 137

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE----KLSIVFFDID 137
              +   +L +       I QLS+ID L+ L N  +    L   N       ++V  D+D
Sbjct: 138 CMVLFEILLSQWRHREQLIKQLSQIDPLTNLFNRRSINQCLDKLNAVATPNYALVLLDLD 197

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK+IND++GH  GD+ +  +S  L         VGR GGEEF      +S ++A  +A 
Sbjct: 198 HFKKINDHYGHHKGDETLVEVSAVLNQQLRESDVVGRFGGEEFILVLKNTSLEKAEQVAE 257

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             R  I+  QI    G  I +T S GIA    +     ++ +ADQALY AK  GRN    
Sbjct: 258 RCRIAIQQLQIFSDEGELIPVTASFGIAISSAELRPQQLLSQADQALYQAKAGGRNLAKA 317

Query: 258 FSDI 261
           +++ 
Sbjct: 318 YAEA 321


>gi|209519429|ref|ZP_03268226.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. H160]
 gi|209500168|gb|EEA00227.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. H160]
          Length = 316

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 63/202 (31%), Positives = 102/202 (50%), Gaps = 11/202 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           L+    +V + +TIS +       + +E   +  ++ + +  D L+G+ N   F + L  
Sbjct: 113 LMRGREVVAVCVTISDVTH--VSIVQREREEAVAKLQEYANRDGLTGIANRRFFEARLRD 170

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   +S++ FD+D+FK+IND FGH VGD V+  ++ ++  V       GR GG
Sbjct: 171 EFTRWQRYGGDMSMLLFDLDHFKKINDQFGHGVGDTVLRVMAQRVAGVVRAQDTFGRFGG 230

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STI 236
           EEFA     +   +A ++A  +R +IE + + +  G S+ +T S G A      P    +
Sbjct: 231 EEFALLLPCTPLDDAMLVAEKIRCVIEETPVELI-GTSVPVTASLGGAAARDGVPAYDVL 289

Query: 237 IYRADQALYVAKKSGRNRVVCF 258
           I  AD ALY AK+ GRN  V F
Sbjct: 290 INEADAALYRAKRQGRNCAVAF 311


>gi|114319852|ref|YP_741535.1| diguanylate cyclase with PAS/PAC sensor [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226246|gb|ABI56045.1| diguanylate cyclase with PAS/PAC sensor [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 686

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 79/175 (45%), Gaps = 11/175 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
              + E       +   +  D L+GL N      +L             +S+V FD+D+F
Sbjct: 509 AEDITERKRREQALRYRASHDGLTGLYNRRHTQRALERELRLAARTGHPVSVVLFDLDHF 568

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND  GH  GD+V+  L+  +         VGR GGEEF     G+ E  A  LA  L
Sbjct: 569 KRVNDTHGHNAGDQVLRQLAGLVTERVRDTDIVGRWGGEEFLLVLPGTDETGAGQLAEVL 628

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           R  +  ++  I       +TIS G A+    E    +  R DQALY AK +GRNR
Sbjct: 629 RAYVAEARFPIPD----PVTISLGYAQAGADEGADALFKRVDQALYAAKANGRNR 679


>gi|154246138|ref|YP_001417096.1| diguanylate cyclase [Xanthobacter autotrophicus Py2]
 gi|154160223|gb|ABS67439.1| diguanylate cyclase [Xanthobacter autotrophicus Py2]
          Length = 496

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 65/266 (24%), Positives = 117/266 (43%), Gaps = 23/266 (8%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60
           +  ++  FL +W+   + L   +    +I          A V +       ++       
Sbjct: 247 LLLAMTYFLLVWIGLRRGLRGITLANVLIG---------AAVTWAGASGAGFMS------ 291

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
               + + LS V   +  +     +  ++ +E  +  +R+++L+  D L  L N   FI 
Sbjct: 292 -HLSVADRLSNVGFFVAAACTFSLMLFAMFEERRLLIDRLTRLASWDSLVELHNRRHFIE 350

Query: 121 SL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                      Y   L ++  D D FK++ND +GH  GD  +  +++    V       G
Sbjct: 351 RADREVAAAQRYGRDLVLLMLDADNFKELNDQYGHAAGDAALKMIAEACAAVARQTDVTG 410

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R+GGEEFA     ++      LA  LR+ IE + + I++G   H+T+S GIA    ++ +
Sbjct: 411 RIGGEEFAMLLPHATLDGGQALAERLRRQIEATPVQIATGRPFHVTVSIGIARLGRRDGL 470

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
             ++  AD+ALY AK++GRNR     
Sbjct: 471 DALMRAADRALYAAKRAGRNRAALAD 496


>gi|170690912|ref|ZP_02882078.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia graminis
           C4D1M]
 gi|170144161|gb|EDT12323.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia graminis
           C4D1M]
          Length = 312

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 100/201 (49%), Gaps = 11/201 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           L     +V + +TIS +       + +E   +  ++ + +  D L+G+ N   F + L  
Sbjct: 113 LTREREVVAVCVTISDVTH--VSIVQREREEAVAKLQEYADRDGLTGIANRRYFEARLLD 170

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   +S++ FD+D+FK+IND FGH VGD V+  ++ ++  V       GR GG
Sbjct: 171 EYTRWQRYGGDMSVLLFDLDHFKKINDQFGHGVGDTVLRVMAQRVAGVVRAQDTFGRFGG 230

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STI 236
           EEFA     +  ++A  +A  +R  I ++ + +  G S+ +T S G A      P    +
Sbjct: 231 EEFALLLPCTPLEDAMRVAEKIRCTIADTPVEV-QGTSVPVTASVGGAAARPGLPAYEVL 289

Query: 237 IYRADQALYVAKKSGRNRVVC 257
           I  AD ALY AK+ GRNR V 
Sbjct: 290 INEADAALYSAKRQGRNRSVA 310


>gi|78486270|ref|YP_392195.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
            XCL-2]
 gi|78364556|gb|ABB42521.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Thiomicrospira crunogena XCL-2]
          Length = 1289

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 91/187 (48%), Gaps = 12/187 (6%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            + +  L     ++  ++  D L+ L N S     L         +N  L+++F D+D FK
Sbjct: 838  TDITSLKEQQRQLEHIAHYDALTQLPNRSLLADRLQQAIFASQRHNSLLAVLFIDLDGFK 897

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ++ND  GH  GD+++  LS ++  +      + R+GG+EF    +         +   LR
Sbjct: 898  KVNDLHGHDAGDELLVELSKRMKNILREEDTLARIGGDEFIVVLVNLDAPSDCEMI--LR 955

Query: 201  KIIENSQINIS-SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
            +++E++  ++   G  + ++ S G+            ++  ADQA+Y AK+SG+NR   F
Sbjct: 956  RLLESTSESVDIEGEVVSVSASIGVTFYPKDNVDADLLMRHADQAMYQAKQSGKNRYHYF 1015

Query: 259  SDIENNT 265
             D++ ++
Sbjct: 1016 -DVQMDS 1021


>gi|224586375|ref|YP_002640174.1| hypothetical protein SPC_4690 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224470903|gb|ACN48733.1| hypothetical protein SPC_4690 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 354

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 76/275 (27%), Positives = 125/275 (45%), Gaps = 22/275 (8%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58
           F  IW  H      +   + F  +  S+   +FI ++ F ANI  F +  L P       
Sbjct: 78  FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 137

Query: 59  ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112
                GL  + +  L +V I+I   +   Y   +  ++ +L      ++ LS +D L+GL
Sbjct: 138 NGNEQGLRILYLLALPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 197

Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +     S    ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 198 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 257

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      +  Q+A   A  +R+ + + +I      S+  ++TIS GIA 
Sbjct: 258 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTISIGIAP 317

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                 I   I +AD+ALY AK  GRN ++   D+
Sbjct: 318 LT-DRNIGDAIEKADKALYEAKHLGRNHILVSDDM 351


>gi|242281165|ref|YP_002993294.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
 gi|242124059|gb|ACS81755.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
          Length = 490

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 10/172 (5%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
           I +N+I   +  D L+ + N  +F   L          N +LS++  D+DYFK +ND +G
Sbjct: 310 IMFNKIKTRANRDGLTRVYNRRSFDERLVEEFKRHQRLNTELSLLMVDLDYFKAVNDTYG 369

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  ++      F +  F+ R GGEEF      + E +A +LA  +R  IE+  
Sbjct: 370 HMAGDMVLEKVARMFEKTFRSTDFIARYGGEEFVILLPHTREDQAEMLAERIRAKIESCA 429

Query: 208 INISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
           +      S +IT S G++       E  + I+ +AD+ALY AK  GRNRVV 
Sbjct: 430 MTYQD-KSFNITASIGVSSVRPGSLEKDTEIVRKADEALYDAKMQGRNRVVV 480


>gi|152990299|ref|YP_001356021.1| hypothetical protein NIS_0550 [Nitratiruptor sp. SB155-2]
 gi|151422160|dbj|BAF69664.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 536

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 74/268 (27%), Positives = 117/268 (43%), Gaps = 41/268 (15%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG--------- 83
           IF  IF+ TV  +  + LF I L  ++   +     ++L  I   I  +L          
Sbjct: 272 IFLPIFLKTVAILLIVSLFSIILGLYFSQLFSSEIVMALNTIQNNIYAMLEGKPEKIKKR 331

Query: 84  ----------------YISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAFISSLG- 123
                             + ++L+   EL      + +++  D L+GL N    I  +  
Sbjct: 332 KLTLDEFDEIEKNIEKLTNDALLRKNSELHKLNMLLREMALKDALTGLYNRYKMIEDIEH 391

Query: 124 ------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y E   ++  DID+FKQIND +GH +GDKV+   +  L  V  +     R GG
Sbjct: 392 QIARYKRYKEPFCLIMLDIDHFKQINDTYGHDIGDKVLKESAKILHTVIRSSDVAARWGG 451

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTI 236
           EEF      +  +E   +AN L+   E        G    +T+SAG+ E     E + T+
Sbjct: 452 EEFMILCPNTHLKEGVAIANRLKDAFEKHNF----GIDRRVTVSAGVVEYRNENEDMKTV 507

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENN 264
           + R D+ LY AK++GRNRVV + + E +
Sbjct: 508 LKRVDERLYQAKRAGRNRVV-YEENERS 534


>gi|330810802|ref|YP_004355264.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378910|gb|AEA70260.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 1092

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 21/219 (9%)

Query: 64  ILVENLSLVIISI--TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           IL   +S+  I++  T  LLL   +   +  L  +  +I  L+  D L+ L N +  +  
Sbjct: 622 ILTVEVSVEPITLNETACLLL---TARDVSLLRNAEAQIRHLAYHDPLTNLPNRALLMDR 678

Query: 122 L-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L         +N + +++F D+D+FK IND+ GHPVGD V+  ++ +L         V R
Sbjct: 679 LSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVAR 738

Query: 175 LGGEEFAAAALGSS------EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-R 227
           LGG+EF     G         ++   LA+ LR+++  S+     G  + +T S GIA   
Sbjct: 739 LGGDEFVVLLSGLEGSRNEVSKQVRTLADTLRELL--SEPMFLDGQRLQVTPSIGIALIP 796

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            H    + ++ RAD ALY AK SGRN    F        
Sbjct: 797 DHGSTPTDLLKRADIALYRAKDSGRNTSQMFHTTMQKAA 835


>gi|172063524|ref|YP_001811175.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
 gi|171996041|gb|ACB66959.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
          Length = 492

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 95/204 (46%), Gaps = 16/204 (7%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           LV       I++++ L      G+ L+    + + +  L+R D L+GL N  +F   L  
Sbjct: 291 LVATFGAAFIAVSVML------GTQLRRRMRAESELVLLARTDGLTGLNNRRSFGEVLDR 344

Query: 125 YNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLG 176
              +        S++F D+D FK  ND +GH  GD  +A ++  +      P     R G
Sbjct: 345 EWRRARRSRSVFSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTAARYG 404

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-- 234
           GEEF      + E  AA +A  +R  I+   +  +     H+T S G+A     + +   
Sbjct: 405 GEEFVVLLPDTPETGAAQIAERIRAAIDELALEHAGSEHGHVTASIGLASWTPDDDVEAG 464

Query: 235 TIIYRADQALYVAKKSGRNRVVCF 258
           ++I  AD+ALY AK +GRN+V  F
Sbjct: 465 SVIKAADEALYYAKATGRNKVAAF 488


>gi|107099561|ref|ZP_01363479.1| hypothetical protein PaerPA_01000574 [Pseudomonas aeruginosa PACS2]
          Length = 1245

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + +  L  +  R+   +  D L+GL N   F S L          +   +++F D+D FK
Sbjct: 792 ADISTLKYAQARLDYQAHHDPLTGLPNRLLFESRLNHALDEAREESRPGAVLFIDLDRFK 851

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
            IND+ GHP+GD ++  ++++L         V RLGG+EF     G  ++ +A  +A  L
Sbjct: 852 HINDSLGHPIGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARKL 911

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 +    + G    ++ S GIA      +   T++  AD A+Y AK  GR+R+  +
Sbjct: 912 LNAF--TAPFQADGHEFFVSASVGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSRIEYY 969

Query: 259 S 259
           +
Sbjct: 970 T 970


>gi|125972929|ref|YP_001036839.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium thermocellum ATCC 27405]
 gi|125713154|gb|ABN51646.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Clostridium thermocellum ATCC 27405]
          Length = 862

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 91/208 (43%), Gaps = 18/208 (8%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-- 123
           + N S VII   ++L         + E+      +  +   D L+GL N S F   L   
Sbjct: 395 IRNDSDVIIGTVVAL-------KDITEIKKKDEILYNMEYYDPLTGLPNRSLFSDRLKMA 447

Query: 124 -----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                  NE  +++  D+D FK IND  GH VGD ++  +++++         V R+GG+
Sbjct: 448 LAQSKRNNEMCALIILDLDNFKAINDTLGHSVGDMLLKQVAEKIKGYLREVDTVARIGGD 507

Query: 179 EFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTI 236
           EF           +A   A+ + K  +  Q  I  G   +IT S GI    +  E   TI
Sbjct: 508 EFIIIQPQIKDINDATRAADRILKKFQ--QPWILEGKEYYITASMGIGIYPNGGEDPQTI 565

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENN 264
              AD ALY AK+ GRN    +++  N 
Sbjct: 566 FKNADTALYRAKELGRNNYQLYTESMNQ 593


>gi|307822698|ref|ZP_07652929.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307736302|gb|EFO07148.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 1183

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 97/207 (46%), Gaps = 11/207 (5%)

Query: 64  ILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  + LS+  +  +  ++  Y+ + + + E   +  +I  L+  D L+ L N       L
Sbjct: 713 IYPKWLSITAVKGSDGVVSHYVGTHTDITERKAAEEQIKLLAFYDPLTRLPNRRLLQERL 772

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                      ++L ++  D+D FK IND+ GH  GD ++  +++++         V RL
Sbjct: 773 KHGINVERRDGKQLGLLMLDLDRFKAINDSLGHLAGDDLLQQVAERIKARLRDVDMVARL 832

Query: 176 GGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF       ++ ++AA +A ++   +      ++   ++ I +S GI+    H +  
Sbjct: 833 GGDEFIVLLEDIAQPEDAARVAKEIIADL-TKPFCLTHSDNVQIGVSIGISLYPQHGDTS 891

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSD 260
             ++  AD ALY AK +GR     FS+
Sbjct: 892 ELLMDHADAALYQAKDAGRGCFAYFSE 918


>gi|330888757|gb|EGH21418.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 1258

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 15/192 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + E   S +RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 807 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQAWVVLMFLDLDRFK 866

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-----L 195
            IND+ GH  GD+++  ++ +L+    +   V R+GG+EF       + +EAA+     +
Sbjct: 867 PINDSLGHAAGDRMLQEMATRLLACVSSDDTVARMGGDEFTLLLQPDTSREAALTRAIHV 926

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  +   +      +  G    +T S GIA      + +S ++  AD A+Y AK+ G+N 
Sbjct: 927 AERILTSL--VTPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNN 984

Query: 255 VVCFSDIENNTC 266
              +    N T 
Sbjct: 985 FQFYQADMNATA 996


>gi|117618387|ref|YP_856882.1| sensory box protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559794|gb|ABK36742.1| sensory box/GGDEF domain protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 431

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 68/254 (26%), Positives = 109/254 (42%), Gaps = 26/254 (10%)

Query: 17  KNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI--LVENLSLVII 74
           K LE+  P  F      +F  F  + I             P +    +  L  + S   +
Sbjct: 179 KRLETLLPQRFRANHDGYFKAFSNSPI----------NSRPMHARASVMGLRRDGSEFPL 228

Query: 75  SITISLL-LGYISG-----SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------S 121
            +TI+ + LG  +        + E       +   +  D L+G+ N   F          
Sbjct: 229 EVTIAKINLGQTTEMTAILRDISERARLVEELKVAATTDPLTGIANRRRFDELVKLEMQR 288

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +   +S++  DID+FKQIND +GH  GD+ I  L  ++         +GR GGEEF 
Sbjct: 289 CQRFGHTMSLLLIDIDHFKQINDTYGHQQGDQAILSLVRRVAKQLREVDMLGRWGGEEFI 348

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRA 240
                +S + A   A  +R  +E+    + +G  + +TIS GI A    ++ +  ++ RA
Sbjct: 349 VLLPETSLELAWASAERIRLAVESQLHQLGAGTEVPLTISIGISASLGPQDTVERMVRRA 408

Query: 241 DQALYVAKKSGRNR 254
           D ALY+AKK GRN 
Sbjct: 409 DTALYLAKKQGRNC 422


>gi|86750341|ref|YP_486837.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
 gi|86573369|gb|ABD07926.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris HaA2]
          Length = 872

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 89/188 (47%), Gaps = 11/188 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFK 140
           G++  E   +  +I++L+  D L+GL N +     +          + +++ F D+D FK
Sbjct: 400 GALAIERKEARAQIARLAYYDMLTGLPNRARLRDLIAQATGTCPPGQHVALAFLDVDNFK 459

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND  GH  GD  +   + +L         + RLGG+EF     G +  EA ++A+ + 
Sbjct: 460 DVNDTLGHAAGDDFLVAFAQRLREQIRPCDMLARLGGDEFVIVMPGRNASEAGLVASRIA 519

Query: 201 KIIENSQINISSGP-SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           + +    + +  G   + ++ S GI+        I  +I +AD A+Y AK+SGR+    F
Sbjct: 520 EALA---LPLGIGTWQVPMSASIGISLYPDNATDIDVLIRQADTAMYQAKRSGRSTYRFF 576

Query: 259 SDIENNTC 266
           S+  N   
Sbjct: 577 SEDMNGAA 584


>gi|89901961|ref|YP_524432.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Rhodoferax ferrireducens T118]
 gi|89346698|gb|ABD70901.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 736

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 10/176 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           E   +   I +L+  D L+GL N                   + ++++F D+D+FK +ND
Sbjct: 300 EQKTAEAYIQRLAHFDALTGLPNRLLLNDRCQQALSVAQRGRQSVALMFLDLDHFKNVND 359

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH VGD+V+  L+ +L         V RLGG+EF      +    AA LA  L +   
Sbjct: 360 SLGHRVGDEVLVELAARLKAAVREQDTVSRLGGDEFILLLPDTDAMGAAHLAEKLLQT-- 417

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             Q  +     + +T S GIA        + T+   AD A+Y AK  GRN    ++
Sbjct: 418 ALQPILIEQHELTVTPSIGIALYPKDGTDLDTLSRCADAAMYRAKADGRNGYRFYT 473


>gi|78485487|ref|YP_391412.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78363773|gb|ABB41738.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2]
          Length = 532

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 104/204 (50%), Gaps = 20/204 (9%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH----S 116
           L+++L+    L+IIS+   L+  +I   I +        + ++++ D L+GL N      
Sbjct: 337 LQHLLINEFLLLIISL---LVFFFIRNQIRQRRL-----LHKMAKTDNLTGLPNRSIFKR 388

Query: 117 AFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           A   ++   N+    LS++FFDID+FK+IND +GH VGDKV+  ++  +           
Sbjct: 389 ALNENIKRSNKKQWPLSLIFFDIDHFKKINDTYGHLVGDKVLKKVARNIEDGLTHKDIFA 448

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEF      +  Q+A  +A  LR+ +E       +   I IT S G+++    +  
Sbjct: 449 RWGGEEFVILLPNTDLQDAEKVAERLRQKLEAM-----TDFDITITSSFGVSDLRPDDTA 503

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
            + + R D+ LY +K+ GRNRV  
Sbjct: 504 ESFMQRGDEMLYRSKEQGRNRVTA 527


>gi|88798529|ref|ZP_01114113.1| GGDEF domain protein [Reinekea sp. MED297]
 gi|88778629|gb|EAR09820.1| GGDEF domain protein [Reinekea sp. MED297]
          Length = 476

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 98/173 (56%), Gaps = 8/173 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           + L    ++  QLS +D L+GL N   F   L         Y++ LSI   DID+FK+IN
Sbjct: 301 RNLLTELHKERQLSMLDPLTGLPNRQGFDRRLSAELARAERYDQALSIAIIDIDFFKRIN 360

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGH VGDKV+  ++ ++  V     F+ R GGEEF      ++ +E     + LR+ +
Sbjct: 361 DEFGHLVGDKVLKMMAKEMKRVCRESDFLSRFGGEEFVLLLPQTTLEEGLTAVDKLRRHV 420

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E    +  + P +++T+SAG+A+R   E + + + RAD ALYV+K+ GRNRV 
Sbjct: 421 ETRPFHYQNTP-VNLTVSAGVAQRQVNETLESWLDRADAALYVSKREGRNRVT 472


>gi|113968612|ref|YP_732405.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113883296|gb|ABI37348.1| diguanylate cyclase [Shewanella sp. MR-4]
          Length = 485

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 68/199 (34%), Positives = 99/199 (49%), Gaps = 14/199 (7%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
             NL L ++ +TI +LL  IS      L     ++  ++  D L+G  N   F       
Sbjct: 292 WSNLGLSLL-VTIGILL--ISNMT---LGRYQRKLEIMASTDKLTGAANRQVFEEYFHQA 345

Query: 126 -------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                     +SI+  DID+FK++ND++GH VGD V+  +++ L         + R GGE
Sbjct: 346 LDKAKLSRTPISILLIDIDHFKKVNDSYGHSVGDLVLKTVTNLLRSQLKEQDILCRWGGE 405

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EF           AA LA   R +I   ++ + +G  I IT+S G+AE    EP   +I 
Sbjct: 406 EFIVLLPEMDLSHAAELAKHFRDLIFQRELKV-NGVHIAITVSIGVAEYQKLEPAEDLIK 464

Query: 239 RADQALYVAKKSGRNRVVC 257
           RAD ALY AK+SGRN+VV 
Sbjct: 465 RADLALYQAKESGRNQVVL 483


>gi|296387080|ref|ZP_06876579.1| hypothetical protein PaerPAb_03054 [Pseudomonas aeruginosa PAb1]
          Length = 1245

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + +  L  +  R+   +  D L+GL N   F S L          +   +++F D+D FK
Sbjct: 792 ADISTLKYAQARLDYQAHHDPLTGLPNRLLFESRLNHALDEAREESRPGAVLFIDLDRFK 851

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
            IND+ GHP+GD ++  ++++L         V RLGG+EF     G  ++ +A  +A  L
Sbjct: 852 HINDSLGHPIGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARKL 911

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 +    + G    ++ S GIA      +   T++  AD A+Y AK  GR+R+  +
Sbjct: 912 LNAF--TAPFQADGHEFFVSASVGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSRIEYY 969

Query: 259 S 259
           +
Sbjct: 970 T 970


>gi|297568907|ref|YP_003690251.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924822|gb|ADH85632.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2]
          Length = 396

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 68/217 (31%), Positives = 96/217 (44%), Gaps = 16/217 (7%)

Query: 55  LTPFYGLE-------YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107
           L P Y  E       Y L  +L+L    +     + Y  G  +    + Y  + +LS  D
Sbjct: 174 LLPLYAKERVVGVFFYYLPPDLTLTKAELETFQTVSYQLGLAIDNARL-YETVRRLSIYD 232

Query: 108 CLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+GL NH  F + L             LS++  DID+FK++ND +GH  GD V+  LS 
Sbjct: 233 PLTGLFNHGQFYNLLAEELSRHQRTGRPLSLLMLDIDHFKKVNDTYGHRAGDAVLQQLSG 292

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            L         V R GGEE A     +  + A   A  LR+ +E           I +T+
Sbjct: 293 LLKKQARAIDRVCRYGGEELALILPETDREAARQTAERLRRHVEKCCFATCGQQEIGVTV 352

Query: 221 SAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
           S G A          T++  AD+ALY AK++GRNRV 
Sbjct: 353 SIGAATCPDAAISAETLVNAADRALYAAKRAGRNRVC 389


>gi|77459772|ref|YP_349279.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1]
 gi|77383775|gb|ABA75288.1| putative GGDEF domain regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 559

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 13/174 (7%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L ++   +  L+  D L+G+ N   F   L              +++  D D+FK+IND 
Sbjct: 379 LTLANAELLNLATHDGLTGVYNRRRFDEKLTEYSLLFRRTGRPFALLLIDADHFKRINDT 438

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIE 204
            GH  GD V+  L+  + +   +  FV R GGEEFA      ++ +   I+A  +R  I 
Sbjct: 439 HGHAAGDDVLRQLAQLIQISIRSTDFVARYGGEEFAVLLPEIAKPDTPDIVAEKIRSAIA 498

Query: 205 NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            +           +T+S G++     +   +T++ RADQ LY AK +GRN+V C
Sbjct: 499 EADFPAVG----PVTVSIGVSLADPADNTPTTLVKRADQQLYKAKAAGRNQVAC 548


>gi|83313443|ref|YP_423707.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82948284|dbj|BAE53148.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Magnetospirillum magneticum AMB-1]
          Length = 355

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 85/167 (50%), Gaps = 8/167 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            + +L+  D L+   N   F       +          +++  DID+FK+IND +GH  G
Sbjct: 187 ELEELASRDSLTQTANRRHFEHLAGLELDHARRMGRSFALLALDIDHFKRINDTWGHAAG 246

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+ +   ++   +       +GR+GGEEFA A   +    A ++A  LR  +E   +  +
Sbjct: 247 DEALKAFANACRLSLREYDILGRIGGEEFAVALPNTGPDGARVIAERLRAAVEELVVRPA 306

Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            G    +T+S GIA+    +  + T++ RADQALY AK SGRNRV+ 
Sbjct: 307 KGELFDLTVSIGIAQLREGDLTVETMLERADQALYRAKNSGRNRVMA 353


>gi|224371380|ref|YP_002605544.1| GGDEF domain family protein [Desulfobacterium autotrophicum HRM2]
 gi|223694097|gb|ACN17380.1| GGDEF domain family protein [Desulfobacterium autotrophicum HRM2]
          Length = 708

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 91/208 (43%), Gaps = 25/208 (12%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132
           ++LG +    L +L  +  RI  L+  D L+GL N   F+  L         YN+K ++ 
Sbjct: 247 IMLGVV--QDLSQLKQAEERIRFLAFYDGLTGLANRMLFMDRLDTQIKKATRYNQKFALF 304

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM------------FVGRLGGEEF 180
           F D+D FK+IND  GH +GD ++  +++ L                     + RLGG+EF
Sbjct: 305 FLDLDQFKKINDTLGHHIGDLLLKTVAETLKSCIRKTDTAARRDKDESGSMIARLGGDEF 364

Query: 181 AAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIY 238
                   S + +AI+A  +   I   +     G  + +T S GI+          T++ 
Sbjct: 365 TVLLSDIKSPENSAIIAQRILDAI--PEAYSIEGKEVSVTTSIGISVFPADGSTPETLLK 422

Query: 239 RADQALYVAKKSGRNRVVCFSDIENNTC 266
            AD A+Y AK  G+N    + +  N   
Sbjct: 423 NADSAMYHAKDRGKNNYQFYMESLNRAA 450


>gi|242278403|ref|YP_002990532.1| diguanylate cyclase with extracellular sensor [Desulfovibrio
           salexigens DSM 2638]
 gi|242121297|gb|ACS78993.1| diguanylate cyclase with extracellular sensor [Desulfovibrio
           salexigens DSM 2638]
          Length = 442

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 98/220 (44%), Gaps = 17/220 (7%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
           I   ++  + +TP + L        ++    I     +     ++ +++      + Q+S
Sbjct: 232 ITQKWIQAVSVTPDWFLPT------AIAGFGIMAGGFIFLYIFTLKRQVASRTEELRQMS 285

Query: 105 RIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           + D L+GL N                 YN  ++ +  DID FK IND +GH VGD V+  
Sbjct: 286 QTDMLTGLYNRRKMDEIMHHEFDRFKRYNTPITFILIDIDNFKTINDTYGHAVGDNVLVR 345

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            ++ L+        +GR GGEEF      ++  E  I+A  LR+ I  ++    +    +
Sbjct: 346 FAEILISNTRKTDRIGRWGGEEFIVVCPETTSGEGMIIAEKLRQRIAETRFPTIN----N 401

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            T S GI E   ++   ++  R D ALY +K+ GRN+V  
Sbjct: 402 CTASFGITEINQQDDFMSLFARCDTALYSSKEQGRNKVTM 441


>gi|212633335|ref|YP_002309860.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212554819|gb|ACJ27273.1| GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 624

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 101/184 (54%), Gaps = 11/184 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL  +  ++++ + ID L+G+ N ++F   +             ++I+  DID+FK I
Sbjct: 442 LRELNEANQKLTEQTTIDSLTGVKNRNSFDKRIVAEGRISRRQQTPMAILMLDIDHFKSI 501

Query: 143 NDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD+ +  ++ +L   +      V R GGEEFA     ++++ A  +A  +RK
Sbjct: 502 NDTYGHLAGDQALRVIAVELKQKLKRPTDLVSRFGGEEFAIILPNTNQEGALQVAESIRK 561

Query: 202 IIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I    I+   G +I +T+S G++      ++  + ++ RAD+ALY AK  GRNRV+ ++
Sbjct: 562 AIFELPISW-GGVTIPLTVSIGVSVEIVSSEQHTTLLLERADKALYRAKNEGRNRVMLYT 620

Query: 260 DIEN 263
             ++
Sbjct: 621 PEQS 624


>gi|195873713|ref|ZP_02698435.2| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|195632965|gb|EDX51419.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
          Length = 308

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 75/275 (27%), Positives = 125/275 (45%), Gaps = 22/275 (8%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58
           F  IW  H      +   + F  +  S+   +FI ++ F ANI  F +  L P       
Sbjct: 32  FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 91

Query: 59  ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112
                GL  + +  L +V I+I   +   Y   +  ++ +L      ++ LS +D L+GL
Sbjct: 92  NGNEQGLRILYLLALPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 151

Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +     S    ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 152 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 211

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      +  Q+A   A  +R+ + + +I      S+  ++T+S GIA 
Sbjct: 212 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 271

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                 I   I +AD+ALY AK  GRN ++   D+
Sbjct: 272 LT-DRNIGDAIEKADKALYEAKHLGRNHILVSDDM 305


>gi|254243669|ref|ZP_04936991.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126197047|gb|EAZ61110.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 1242

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + +  L  +  R+   +  D L+GL N   F S L          +   +++F D+D FK
Sbjct: 789 ADISTLKYAQARLDYQAHHDPLTGLPNRLLFESRLNHALDEAREESRPGAVLFIDLDRFK 848

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
            IND+ GHP+GD ++  ++++L         V RLGG+EF     G  ++ +A  +A  L
Sbjct: 849 HINDSLGHPIGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARKL 908

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 +    + G    ++ S GIA      +   T++  AD A+Y AK  GR+R+  +
Sbjct: 909 LNAF--TAPFQADGHEFFVSASVGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSRIEYY 966

Query: 259 S 259
           +
Sbjct: 967 T 967


>gi|200387621|ref|ZP_03214233.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199604719|gb|EDZ03264.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
          Length = 308

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 75/275 (27%), Positives = 125/275 (45%), Gaps = 22/275 (8%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58
           F  IW  H      +   + F  +  S+   +FI ++ F ANI  F +  L P       
Sbjct: 32  FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 91

Query: 59  ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112
                GL  + +  L +V I+I   +   Y   +  ++ +L      ++ LS +D L+GL
Sbjct: 92  NGNEQGLRILYLLALPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 151

Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +     S    ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 152 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDTVRS 211

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      +  Q+A   A  +R+ + + +I      S+  ++T+S GIA 
Sbjct: 212 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 271

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                 I   I +AD+ALY AK  GRN ++   D+
Sbjct: 272 LT-DRNIGDAIEKADKALYEAKHLGRNHILVSDDM 305


>gi|91977506|ref|YP_570165.1| response regulator PleD [Rhodopseudomonas palustris BisB5]
 gi|91683962|gb|ABE40264.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris BisB5]
          Length = 457

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 81/165 (49%), Gaps = 9/165 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N     S L        +  + L+++  DID+FK IND++GH  GD V
Sbjct: 290 EMAITDGLTGLHNRRYMESHLATLAEQAGARGKPLALMILDIDFFKSINDSYGHDAGDDV 349

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG- 213
           +   + ++           R GGEEF      +    A ++A  LR+ I      I  G 
Sbjct: 350 LREFATRIRKSIRGIDLACRYGGEEFVIVMPETDLHVAQMVAERLRRAIAGEPFGIEKGA 409

Query: 214 PSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
             I +TIS G++      EP+  ++ RAD ALY AK  GRNRVV 
Sbjct: 410 KRIEVTISIGLSTLERKGEPVRDLLKRADTALYRAKHDGRNRVVA 454


>gi|254457006|ref|ZP_05070434.1| diguanylate cyclase with PAS/PAC sensor [Campylobacterales
           bacterium GD 1]
 gi|207085798|gb|EDZ63082.1| diguanylate cyclase with PAS/PAC sensor [Campylobacterales
           bacterium GD 1]
          Length = 598

 Score =  201 bits (512), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 89/186 (47%), Gaps = 15/186 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDID 137
           IS + ++       RI +LS  D L+ L N             + G YN   S++  DID
Sbjct: 420 ISYTAIRHDITDKKRIEELSITDRLTQLYNRLKLDEIFAMKLATAGRYNTNFSVIIIDID 479

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           YFK +ND +GH  GD V+   ++ +         VGR GGEEF   +  +    A  L+ 
Sbjct: 480 YFKLVNDTWGHQAGDDVLREFAEIIKNNARETDIVGRWGGEEFLILSSDTDLDGAIKLSE 539

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            LR+++     + +       T S G++     +   T++ RAD+ALY AK++GRNRV  
Sbjct: 540 KLREMVSLFNFSFAGYK----TASFGVSSYHPGDDEKTMVKRADEALYRAKENGRNRV-- 593

Query: 258 FSDIEN 263
             + EN
Sbjct: 594 --EAEN 597


>gi|120612291|ref|YP_971969.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
 gi|120590755|gb|ABM34195.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
          Length = 357

 Score =  201 bits (512), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 108/234 (46%), Gaps = 22/234 (9%)

Query: 40  ATVIFIANIFLFYIGL----------TPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
           AT + +  +F+FY+G+           P   L   +    ++ ++    +    Y  GS+
Sbjct: 126 ATPVMLFALFVFYVGMYEFSRRHGAQAPLDPLGQSIAHAFNVAVVFAMAAYTARYYYGSV 185

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           L+    +  R+ + +  D L+GL N           I+   +  +  S+V  DID+FK+I
Sbjct: 186 LR----AERRLEEQACTDPLTGLSNRRRLAGLAQERIAQARAAGQPTSVVIADIDHFKRI 241

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD+V+  +++ +         + R GGEEF          +A  LA  +R I
Sbjct: 242 NDTHGHEAGDQVLVHVAELMERSSRAHDLLARWGGEEFLLVMPSCGLGDAQALAERMRAI 301

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +           +I  ++S G+A+    E +   I RADQALY +K++GRNRV 
Sbjct: 302 VAGHPAR-RDTQAIPASLSLGVAQLRGGESLEAAIARADQALYASKEAGRNRVT 354


>gi|288957506|ref|YP_003447847.1| signaling protein [Azospirillum sp. B510]
 gi|288909814|dbj|BAI71303.1| signaling protein [Azospirillum sp. B510]
          Length = 1077

 Score =  201 bits (512), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 96/213 (45%), Gaps = 12/213 (5%)

Query: 64  ILVENLSLVIISITISLLLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +  E LS+ ++      +  YI+  + + E      RI  L++ D L+ L N       L
Sbjct: 595 VFPEWLSVTVVRNEDGAVANYIAAFTDITETRAQEERIRHLAQFDFLTDLPNRFLLRDRL 654

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                    +  ++ ++F D+D FK IND+ GH VGD ++  ++ +LV        V R 
Sbjct: 655 ERAMLAAGRHGSRVGLLFVDLDRFKTINDSLGHQVGDSLLREVAARLVGTVRASDTVSRQ 714

Query: 176 GGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-I 233
           GG+EF        + EAA I+A  + + +  S+  +  G  + +T S GIA        I
Sbjct: 715 GGDEFIILIGDMDDGEAAGIVARKVLRSV--SEPYLIDGHELQVTPSIGIAIYPDDGTGI 772

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             ++  AD A+Y AK+ GR     F+   N   
Sbjct: 773 DALLKSADMAMYAAKEGGRATYRFFTPELNRRA 805


>gi|89091982|ref|ZP_01164937.1| hypothetical protein MED92_07441 [Oceanospirillum sp. MED92]
 gi|89083717|gb|EAR62934.1| hypothetical protein MED92_07441 [Oceanospirillum sp. MED92]
          Length = 944

 Score =  201 bits (512), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 98/214 (45%), Gaps = 14/214 (6%)

Query: 64  ILVENLSLVIISITISLLLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAF---- 118
           +  + LS+  ++ +  +   YI+  + L E      ++  LS  D L+ L N        
Sbjct: 479 VFPQWLSIQAVTDSAGMARNYIASITDLTERKQVEEKLRYLSDFDPLTNLPNRRLLGYRV 538

Query: 119 ISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
             +L       +++ ++++ D+D+FK IND+ GH  GD+++  ++ ++  +      V R
Sbjct: 539 DQTLSLSRRQPDQQFALLYIDLDHFKNINDSLGHRFGDEILQKVAKRITELVREGDTVSR 598

Query: 175 LGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           LGG+EF        + ++AA LA  +   I      + +   + IT S GIA      + 
Sbjct: 599 LGGDEFMILMPELHKLEQAANLAERILHNIAQ---PLENDSHLMITPSVGIAVYPNDGDS 655

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              ++  AD A++ AK+ GRN    ++   N   
Sbjct: 656 FDKLLRNADAAVHFAKRQGRNNYQFYTAEMNQRA 689


>gi|322509775|gb|ADX05229.1| Putative membrane protein with GGDEF domain [Acinetobacter
           baumannii 1656-2]
          Length = 255

 Score =  201 bits (512), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 72/249 (28%), Positives = 122/249 (48%), Gaps = 15/249 (6%)

Query: 28  MIYFS--IFFSIFI-ATVIFIANIFLFYIGL---TPFYGLEYIL-VENLSLVIISITISL 80
           M+ F   I +S FI AT+I     +L   G+    P +    I   +     + S+   +
Sbjct: 1   MVLFERKIVYSAFIPATIILAVCTYLSMTGVISYAPLFNFTAIRHAQTNPFWLGSMLFFI 60

Query: 81  LLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIV 132
           +   ++  IL E+ ++  R     I +LS+ID L+ +LN  +  + L + +E+    +++
Sbjct: 61  MPILVACFILFEILLTQWRQRETYIQRLSQIDPLTNVLNRRSLNTHLEALHEQQFDYAVI 120

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK+IND +GH  GD+V+  ++  L         +GR GGEEF      +   +A
Sbjct: 121 LLDIDHFKKINDIYGHHQGDQVLIEIAQCLSENLRNEDIIGRFGGEEFILLLPHTDIIQA 180

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             +A   R+ ++   I  +    IH++ S GI+          +I +ADQALY  K SGR
Sbjct: 181 EKIAERCRQALQELTIFNNQNIQIHVSASFGISSSAFANDPYLVIRQADQALYAVKASGR 240

Query: 253 NRVVCFSDI 261
           N+V  F  +
Sbjct: 241 NQVRTFHQL 249


>gi|153000773|ref|YP_001366454.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|151365391|gb|ABS08391.1| diguanylate cyclase [Shewanella baltica OS185]
          Length = 342

 Score =  201 bits (512), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 10/180 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
           G  ++ L      +S  +  D L+ L N  A+  S+         +  + S++  DID F
Sbjct: 162 GQEVQNLKSEMENLSLAAMTDQLTSLHNRRAYELSIQDQIYLPQDHQTRCSLLLIDIDNF 221

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND +GH  GDKV+A+++  L        FV R GGEEF      +   +A  +A +L
Sbjct: 222 KAFNDTYGHLTGDKVLAYVALALKQCVRGDDFVARYGGEEFVVVLPNTHFHDALQVAENL 281

Query: 200 RKIIENSQINISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R+ I   ++ I     +    IT+S G+A     +   T+  RAD+ALY AK  GRN V 
Sbjct: 282 RERISERRLTIGKDKKLSLGAITVSIGLASLQQGDDAETLFSRADKALYQAKAEGRNCVR 341


>gi|120602347|ref|YP_966747.1| diguanylate cyclase [Desulfovibrio vulgaris DP4]
 gi|120562576|gb|ABM28320.1| diguanylate cyclase [Desulfovibrio vulgaris DP4]
          Length = 331

 Score =  201 bits (512), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 9/180 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           L+E   +   +++    D L+GL N  AF   L +  E+       LS+V  DID+FK +
Sbjct: 122 LREWQRTIEEMARQRDTDPLTGLPNRRAFTRHLEAELERTRRGRGDLSLVILDIDHFKSV 181

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           NDN+GHP GD+V+  L+ QL           R+GGEEFA    G+S  +A  L   + + 
Sbjct: 182 NDNYGHPCGDEVLLRLASQLQTSVRLYDLAARIGGEEFAIVLPGASALKAQALCERILQR 241

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFSD 260
             ++ ++    P  H+T S GIA        P S ++ RAD+ALY AK++GRNR+    +
Sbjct: 242 FASTGMDCPGVPPFHVTFSGGIATCTTGVTCPASLLVDRADKALYEAKQAGRNRIYVHRE 301


>gi|160875482|ref|YP_001554798.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|217973268|ref|YP_002358019.1| diguanylate cyclase [Shewanella baltica OS223]
 gi|304408814|ref|ZP_07390435.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|307302817|ref|ZP_07582572.1| diguanylate cyclase [Shewanella baltica BA175]
 gi|160861004|gb|ABX49538.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|217498403|gb|ACK46596.1| diguanylate cyclase [Shewanella baltica OS223]
 gi|304352635|gb|EFM17032.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|306913177|gb|EFN43599.1| diguanylate cyclase [Shewanella baltica BA175]
 gi|315267669|gb|ADT94522.1| diguanylate cyclase [Shewanella baltica OS678]
          Length = 342

 Score =  201 bits (512), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 10/180 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
           G  ++ L      +S  +  D L+ L N  A+  S+         +  + S++  DID F
Sbjct: 162 GQEVQNLKSEMENLSLAAMTDQLTSLHNRRAYELSIQDQIYLSQDHQTRCSLLLIDIDNF 221

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND +GH  GDKV+A+++  L        FV R GGEEF      +   +A  +A +L
Sbjct: 222 KAFNDTYGHLTGDKVLAYVALALKQCVRGDDFVARYGGEEFVVVLPNTHFHDALQVAENL 281

Query: 200 RKIIENSQINISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R+ I   ++ I     +    IT+S G+A     +   T+  RAD+ALY AK  GRN V 
Sbjct: 282 RERISERRLTIGKDKKLSLGAITVSIGLASLQQGDDAETLFSRADKALYQAKAEGRNCVR 341


>gi|34499590|ref|NP_903805.1| hypothetical protein CV_4135 [Chromobacterium violaceum ATCC 12472]
 gi|34105441|gb|AAQ61796.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 585

 Score =  201 bits (512), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 15/203 (7%)

Query: 64  ILVENLSLVIISITISLLLGYISGSIL---KELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +L     L  ++  +  ++   +  +    + L     +++QL+R D L+GL N  A   
Sbjct: 380 LLARERQLADVNANLEQMVADRTEQLRESNRLLVQKAAQLAQLARNDALTGLHNRMAANE 439

Query: 121 SLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L              +++  D+D+FK++ND  GH  GD+V+  ++D L        FV 
Sbjct: 440 QLQEEHLRHGRSGAPYAVLLLDVDHFKRVNDTHGHDAGDRVLRHIADILRRAARATDFVA 499

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP- 232
           R GGEEF      +    AA+LA  +R  +E SQ          +T+S G+A     +  
Sbjct: 500 RFGGEEFLLLLPETDADGAAVLAEKIRASVEQSQAPDVG----RVTLSIGLATVVPADSQ 555

Query: 233 ISTIIYRADQALYVAKKSGRNRV 255
               + RADQALY AK +GRNRV
Sbjct: 556 PEMAVKRADQALYRAKAAGRNRV 578


>gi|158521095|ref|YP_001528965.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3]
 gi|158509921|gb|ABW66888.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3]
          Length = 396

 Score =  201 bits (512), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 78/273 (28%), Positives = 122/273 (44%), Gaps = 18/273 (6%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60
            T +   F +++L    ++ S       +  +   S F A V FI           P + 
Sbjct: 121 FTGTYYTFGALFLFFGASISSSLADIRKVRLAYLAS-FGALVAFIVMDSSGMFRHAPLFT 179

Query: 61  LEYILVENLSLVI-----ISITISL-LLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
              +  +   L +     + IT+SL ++ YI+    K   +  +   ++S +D L+ L N
Sbjct: 180 RIPLHPDGSPLPVWFGVQVFITVSLTIMLYITIVTFKRWGVREDVYRKMSTVDGLTRLTN 239

Query: 115 HSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
              FI              +  +S +  DID+FK IND +GH  GDKV+  ++  L    
Sbjct: 240 RRTFIERSEKELSSGQRRPSSHISCIMIDIDHFKAINDTYGHAAGDKVLVKIATILTEKA 299

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                VGR GGEEFA     ++   A  +A   R  I N++I I  G  I +T S G+A 
Sbjct: 300 RPTDEVGRYGGEEFAMLLPATTLAGAVKVAERQRASIANAEI-IVDGNIIQVTASFGVAS 358

Query: 227 RCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
                 + I+ ++  AD ALY AK++GRNRVV 
Sbjct: 359 CPSDDIDNINELLKTADVALYEAKRAGRNRVVA 391


>gi|315500124|ref|YP_004088927.1| response regulator receiver modulated diguanylate cyclase
           [Asticcacaulis excentricus CB 48]
 gi|315418136|gb|ADU14776.1| response regulator receiver modulated diguanylate cyclase
           [Asticcacaulis excentricus CB 48]
          Length = 454

 Score =  201 bits (512), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 13/195 (6%)

Query: 76  ITISLLLGYISGSILKE-----LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125
           + I  LL    G I ++     L  S +R  +L+  D L+GL N       L        
Sbjct: 257 VDIQELLARARGQIRRKRYADFLRASLDRSLELAVTDPLTGLNNRRFMDLQLTQLMRRHL 316

Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
             ++ +S++  DID+FK++ND FGH  GD+V+   + ++           RLGGEEF   
Sbjct: 317 KTDDPVSLLLLDIDHFKRVNDGFGHDAGDEVLKEFARRVSQNVRAIDMPCRLGGEEFVVL 376

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQ 242
              +    A  +A  +R+ +  +  ++  G ++ +T+S G++      + +   I RAD+
Sbjct: 377 MPDTPADAAQTIAERVRQAVAEAPFSLPDGRTLDVTVSVGVSSLLGLGDTLEAFIKRADE 436

Query: 243 ALYVAKKSGRNRVVC 257
           A+Y AK+SGRNRV+ 
Sbjct: 437 AVYEAKQSGRNRVIL 451


>gi|146305795|ref|YP_001186260.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Pseudomonas mendocina ymp]
 gi|145573996|gb|ABP83528.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Pseudomonas mendocina ymp]
          Length = 1404

 Score =  201 bits (512), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 54/200 (27%), Positives = 92/200 (46%), Gaps = 16/200 (8%)

Query: 81   LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
            L+ Y+   S + E   S  RI +L+  D L+ L N + F   L         +NE + ++
Sbjct: 945  LVSYVCFFSDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERHNEWVVLM 1004

Query: 133  FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE- 191
            F D+D FK IND+ GH  GD+++  ++ +L         V R+GG+EF       + +E 
Sbjct: 1005 FLDLDRFKPINDSLGHAAGDRMLKDVAVRLSACVDGDDTVARMGGDEFTLLLQPRATREG 1064

Query: 192  ----AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYV 246
                A  +A  +   +   +  +  G    +T S GIA      + +S ++  AD A+Y 
Sbjct: 1065 ALNRAIHVAEQILDSLA--RPFVLEGREFFVTASIGIALAPQDGDELSQLMKNADTAMYH 1122

Query: 247  AKKSGRNRVVCFSDIENNTC 266
            AK+ G+N    +    N + 
Sbjct: 1123 AKERGKNNFQFYQADMNASA 1142


>gi|95930642|ref|ZP_01313376.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95133294|gb|EAT14959.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 475

 Score =  201 bits (512), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 8/160 (5%)

Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  D L+G+ N    +                LS+V  DID+FK++ND +GH VGD+V+ 
Sbjct: 312 ATTDPLTGIANRRYALEQAALEIKRNQRTGTPLSVVMMDIDHFKKVNDTYGHHVGDQVLM 371

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++            V R GGEEF      ++   A   A  +R+ IE+     + G ++
Sbjct: 372 EVAQTCRSHCRESDLVSRFGGEEFLILLPSTNLNGAQTHAEKIRQAIEDLSFPTAEG-NV 430

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +T S G+++   +  I  ++ RAD ALY AK  GRN V 
Sbjct: 431 SVTASFGVSQWQGETKIDRVVSRADAALYQAKHDGRNCVR 470


>gi|320322619|gb|EFW78712.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. glycinea str. B076]
          Length = 1245

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 15/192 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + E   S +RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 794 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQAWVVLMFLDLDRFK 853

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-----L 195
            IND+ GH  GD+++  ++ +L+    +   V R+GG+EF       + +EAA+     +
Sbjct: 854 PINDSLGHAAGDRMLQEMATRLLACVSSDDTVARMGGDEFTLLLQPDTSREAALTRAIHV 913

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  +   +      +  G    +T S GIA      + +S ++  AD A+Y AK+ G+N 
Sbjct: 914 AERILTSL--VTPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNN 971

Query: 255 VVCFSDIENNTC 266
              +    N T 
Sbjct: 972 FQFYQADMNATA 983


>gi|298505017|gb|ADI83740.1| sensor diguanylate cyclase, GAF domain-containing [Geobacter
           sulfurreducens KN400]
          Length = 688

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 85/183 (46%), Gaps = 12/183 (6%)

Query: 87  GSILKELFISYNR---ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
            SI+ E  +S  R   + QLS  D L+GL N       +         +N  L+++  D+
Sbjct: 485 ASIMIERALSIERADILEQLSITDHLTGLYNRRFLKRRMEEELARSIRHNLNLTVMLIDL 544

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK  ND  GH  GD+ +   +  L         V R GGEEF     G+S++E+  +A
Sbjct: 545 DHFKIYNDLCGHLAGDRALKRTAKILSETARQMDVVTRFGGEEFCIILPGTSKKESIFVA 604

Query: 197 NDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNR 254
             +R+ IE  +        +  +T S GIA          +++  AD ALY AK  GRNR
Sbjct: 605 ERIRREIEGEEFPHEENLPLGRLTASIGIASFPEDGSTEASLVKAADVALYRAKSDGRNR 664

Query: 255 VVC 257
           V+ 
Sbjct: 665 VII 667


>gi|218886116|ref|YP_002435437.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757070|gb|ACL07969.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 552

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 13/177 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            + +LS  D L+GL N      +            +  + +  D+D+FK IND  GH  G
Sbjct: 349 ELERLSGTDELTGLANRRLLADAGARIVSICRRAGQPCACLMLDLDHFKHINDVHGHATG 408

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  L+  ++    +  F  R+GGEEFA  A  +    A  LA  LR+ +E   +  +
Sbjct: 409 DEVLRRLAAAIMATVRSSDFAVRMGGEEFAIIAPNTDATHAMALAERLRRNVERIDLRQA 468

Query: 212 SGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             P + + IS G+A      R    P+  ++ RAD ALY AK++GRNRVV + D E 
Sbjct: 469 DMP-VPVAISVGVAGMTVTPRYGAGPLEDLLARADHALYRAKQAGRNRVVLWDDAER 524


>gi|116054303|ref|YP_788748.1| hypothetical protein PA14_07500 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115589524|gb|ABJ15539.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 1245

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + +  L  +  R+   +  D L+GL N   F S L          +   +++F D+D FK
Sbjct: 792 ADISTLKYAQARLDYQAHHDPLTGLPNRLLFESRLNHALDEAREESRPGAVLFIDLDRFK 851

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
            IND+ GHP+GD ++  ++++L         V RLGG+EF     G  ++ +A  +A  L
Sbjct: 852 HINDSLGHPIGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARKL 911

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 +    + G    ++ S GIA      +   T++  AD A+Y AK  GR+R+  +
Sbjct: 912 LNAF--TAPFQAEGHEFFVSASVGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSRIEYY 969

Query: 259 S 259
           +
Sbjct: 970 T 970


>gi|258404468|ref|YP_003197210.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
 gi|257796695|gb|ACV67632.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
          Length = 531

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 96/184 (52%), Gaps = 9/184 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDI 136
            +    + E   + +R+ Q++  D L+GL N   F             Y+  ++I+  DI
Sbjct: 337 LVLMRDVSERKEAESRLLQMAATDELTGLYNRRRFFELARGEFNRAKRYSSPMTILLLDI 396

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK+IND +GH  GD  +  +   +     +   + RLGGEEF A    + + +A  +A
Sbjct: 397 DYFKRINDEYGHDAGDTALRCIVSMIASQLRSLDVLARLGGEEFVALLPETHQFDAERIA 456

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             +R  IE++ IN+    ++ +T+S G+A    + + +  +I RAD+A+Y AK+ GRN+V
Sbjct: 457 ERIRSEIESTAINLFE-TTLFVTVSIGVAGYSKEMQDVGELINRADEAMYRAKRDGRNQV 515

Query: 256 VCFS 259
              +
Sbjct: 516 CLAT 519


>gi|224373317|ref|YP_002607689.1| putative diguanylate cyclase [Nautilia profundicola AmH]
 gi|223588394|gb|ACM92130.1| putative diguanylate cyclase [Nautilia profundicola AmH]
          Length = 462

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 68/215 (31%), Positives = 111/215 (51%), Gaps = 16/215 (7%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS---YNRISQLSRIDC 108
           +I +T  Y   Y L + L +V +S  I + L Y    + KE+         + +LS ID 
Sbjct: 247 WIHVT--YQQGYSLKQVLLIVFVSFIIIVALVYWIRMLKKEINKRKEIEKELQKLSIIDS 304

Query: 109 LSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+G+ N     ++L         ++  LS++FFDID+FK+IND +GH +GDK++  ++D 
Sbjct: 305 LTGIFNRYKIDTALKQQISYSKRHHLPLSVIFFDIDHFKKINDTYGHRIGDKILKEIADI 364

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +          GR GGEEF      ++  +A  +A  L+ +IEN +     G    +T S
Sbjct: 365 IKHSLREYDIFGRWGGEEFIIILPNTNLLQAIKVAKKLKSLIENHRFKYIDG----LTCS 420

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ E   ++   +I+ R D  +Y AKK GRN++V
Sbjct: 421 FGVTELMPEDNSDSILIRVDSFMYEAKKRGRNQIV 455


>gi|302342602|ref|YP_003807131.1| diguanylate cyclase [Desulfarculus baarsii DSM 2075]
 gi|301639215|gb|ADK84537.1| diguanylate cyclase [Desulfarculus baarsii DSM 2075]
          Length = 394

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 107/204 (52%), Gaps = 13/204 (6%)

Query: 66  VENLSLVIISITISLLLGYI-----SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           V N  ++I+++ + L   +I     S  + +E+  +  ++  L+  D L+GL+N   F+ 
Sbjct: 191 VFNAIVLIVAVLVELSWAWIFLVMNSQRLEQEITSAQEKLILLAASDPLTGLVNRRRFLE 250

Query: 121 -------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                      Y   L+++  D+D+FK++ND+FGH  GD V+   +   + V   P  +G
Sbjct: 251 MGQAELERSLRYGRPLAVLVMDVDHFKRVNDSFGHATGDLVLRQTAQACLAVLREPDVLG 310

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           RLGG+EFAA    ++ + A  LA  LR+ +   +++   G ++  ++S G+A     +  
Sbjct: 311 RLGGDEFAALLPETTLEGALALAERLRQAVGGLRLDYR-GQAVRTSLSIGVAAMKPDDTP 369

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
             +I RAD ALY AK  GR++V  
Sbjct: 370 HGLIERADAALYKAKHQGRDQVQA 393


>gi|218892320|ref|YP_002441187.1| putative integral membrane sensor domain [Pseudomonas aeruginosa
           LESB58]
 gi|296389888|ref|ZP_06879363.1| putative integral membrane sensor domain [Pseudomonas aeruginosa
           PAb1]
 gi|313110414|ref|ZP_07796299.1| putative integral membrane sensor domain-containing protein
           [Pseudomonas aeruginosa 39016]
 gi|218772546|emb|CAW28329.1| putative integral membrane sensor domain [Pseudomonas aeruginosa
           LESB58]
 gi|310882801|gb|EFQ41395.1| putative integral membrane sensor domain-containing protein
           [Pseudomonas aeruginosa 39016]
          Length = 685

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 13/224 (5%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLS 110
           G+   +    ++V  L+++ I++ +S+L   +      +   L  +   + QL+  D L+
Sbjct: 210 GIDNGWLAVLVIVITLAVIAIALIVSVLDSRLEARTSVLATSLARANRELIQLALHDNLT 269

Query: 111 GLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            L N       L          + + +++F D+D FK +ND +GH +GD ++  +++++ 
Sbjct: 270 KLPNRMLLDDRLEQAIQQAIRDDRRFAVLFMDLDGFKAVNDAYGHHLGDLLLIEVAERIR 329

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   + RLGG+EF          +AA LA  L K I  SQ    S   + I+ S G
Sbjct: 330 ANVRAQDTIARLGGDEFVLLIEAREPADAATLAEKLVKRI--SQPYQISRHEVRISASIG 387

Query: 224 IAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           IA      +    ++  AD A+Y AK  GRN    F    N   
Sbjct: 388 IALYPGDGQTRHELMINADAAMYHAKDQGRNGYCFFESSMNANA 431


>gi|312195498|ref|YP_004015559.1| serine/threonine protein kinase [Frankia sp. EuI1c]
 gi|311226834|gb|ADP79689.1| serine/threonine protein kinase [Frankia sp. EuI1c]
          Length = 1681

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 86/210 (40%), Gaps = 16/210 (7%)

Query: 66   VENLSLVIISITISLLLGYISGSILK-------ELFISYNRISQLSRIDCLSGLLNHSAF 118
            +E + L+   +T+SL    +  S+ +       +L  +  R+ QLS  D L+GL N    
Sbjct: 1471 LEGIMLIAAQLTVSLDNALVYASLERKVTERTRQLAAANQRLEQLSVTDPLTGLANRRRL 1530

Query: 119  ISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
               L          +  L +   D+D+FK  ND FGH  GD+ +  ++  L         
Sbjct: 1531 EDVLDSEWGRSAQRHTPLGLAMIDVDHFKGYNDRFGHTAGDRCLQRVAACLRANVRDTEL 1590

Query: 172  VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCH 229
              R GGEEFA     S    A  LA  L   +        S     +T+S G A      
Sbjct: 1591 AARYGGEEFAIVMPNSDRDTATRLAGRLCHAVAELAEPHPSAQKAIVTVSVGAASVLPGP 1650

Query: 230  KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +I  AD ALY AK+ GR RV    
Sbjct: 1651 DGSVAKLIDLADAALYQAKRDGRGRVSVAD 1680


>gi|256396884|ref|YP_003118448.1| diguanylate cyclase [Catenulispora acidiphila DSM 44928]
 gi|256363110|gb|ACU76607.1| diguanylate cyclase [Catenulispora acidiphila DSM 44928]
          Length = 592

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 108/245 (44%), Gaps = 13/245 (5%)

Query: 23  SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL 82
           SP  +         I            +   GL     ++ +++   + V++++     L
Sbjct: 332 SPSRWGSLLRTVRGILPYLAAAFCLAGVLADGLDTARRMDPVVLIAGAAVLVALVARQAL 391

Query: 83  GYISGSILKE-LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
                  L E L  +   +   +  D L+GL N +     L        +  E ++++F 
Sbjct: 392 TLFENQRLTEDLRRAAATLQHHAYHDPLTGLANRALLTDRLEHALTQRQAEWEPVAVIFL 451

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAA 193
           D+D FK +ND+ GH  GD+V+   + ++         V R GG+EF     +G++   A 
Sbjct: 452 DLDGFKGVNDSVGHETGDRVLVEAAGRISGSLRVGDTVARFGGDEFVIVLEVGTTVGGAL 511

Query: 194 ILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           ++A  +R ++ E  +I    GP+ H+  S G+A        S ++ RAD A+Y AK +GR
Sbjct: 512 VVAERIRGRLCEEYRI---EGPAHHLGASIGVAFSEPGGSASNLLRRADAAMYRAKTAGR 568

Query: 253 NRVVC 257
           NRVV 
Sbjct: 569 NRVVA 573


>gi|39936195|ref|NP_948471.1| response regulator PleD [Rhodopseudomonas palustris CGA009]
 gi|192291911|ref|YP_001992516.1| response regulator PleD [Rhodopseudomonas palustris TIE-1]
 gi|39650050|emb|CAE28573.1| putative diguanylate cyclase (GGDEF) with response regulator
           receiver domain [Rhodopseudomonas palustris CGA009]
 gi|192285660|gb|ACF02041.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris TIE-1]
          Length = 457

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 9/165 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N     S L        +  + L+++  DID+FK IND++GH  GD V
Sbjct: 290 EMAITDGLTGLHNRRYMESHLATLAEQAGARGKPLALMILDIDFFKSINDSYGHDAGDDV 349

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG- 213
           +   + ++           R GGEEF      +    A ++A  LR+ I      I  G 
Sbjct: 350 LREFALRIKKSIRGIDLACRYGGEEFVIVMPETDLHVAQMVAERLRRAIAGEPFAIEKGT 409

Query: 214 PSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
             I +TIS G++      EPI  ++ RAD ALY AK  GRNRVV 
Sbjct: 410 RRIEVTISIGLSTLERKGEPIPDLLKRADTALYRAKHDGRNRVVA 454


>gi|294140899|ref|YP_003556877.1| sensory box/GGDEF family protein [Shewanella violacea DSS12]
 gi|293327368|dbj|BAJ02099.1| sensory box/GGDEF family protein [Shewanella violacea DSS12]
          Length = 273

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 81/165 (49%), Gaps = 7/165 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++      D L+GL N + F   L         +     ++ FD+D FK +ND +GHP+
Sbjct: 107 EKLQHKLNTDNLTGLNNRNYFDGQLVEISQQYKRFGHTFCVLMFDLDKFKMVNDTYGHPI 166

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDKV+   + +   V      + R GGEEF A    +  + A  +AN +R+ I    +  
Sbjct: 167 GDKVLQEFAKKTKQVIREVDILARFGGEEFIALLPNTRLKAAKEVANRIRQRISQQIVLS 226

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                +  T+S G+AE    +   +II RAD ALY AK SGRNRV
Sbjct: 227 QDHEPVTFTVSIGVAEFSPHDDTESIIKRADDALYRAKNSGRNRV 271


>gi|291613934|ref|YP_003524091.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291584046|gb|ADE11704.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 995

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 80/190 (42%), Gaps = 11/190 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           + + L E  ++   I + +  D L+ L N   F   L              +++  D+D+
Sbjct: 547 THTDLSERKLAEETIRRQANYDSLTQLPNRRLFRDRLEQTIRLAKRDQSSFALMLIDLDH 606

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK++ND  GH  GD ++   + ++         V R+GG+EF       +       +A 
Sbjct: 607 FKEVNDTMGHDAGDFLLVDAAQRIQHCVRESDTVARMGGDEFVVILPDVNDPDNIERIAQ 666

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           ++   +      +       I+ S GI       + + T++  ADQA+YVAK  GRNR+ 
Sbjct: 667 NIITKLAA--PFVLGEEKAFISASIGITLYPSDADSMETLLKNADQAMYVAKHLGRNRMS 724

Query: 257 CFSDIENNTC 266
            F+ +     
Sbjct: 725 YFTPVLQENA 734


>gi|89519310|gb|ABD75787.1| sensory box/GGDEF family protein [uncultured bacterium]
          Length = 874

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 22/200 (11%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---------------NE 127
             I+   + E   +   I  L+  D L+GLLN  +F + L                    
Sbjct: 419 SIITLQDITERKKTEEEIKFLAYHDVLTGLLNRKSFYTRLEDELIRSYSYDGDRRRIKGH 478

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186
           K ++ F D+D FK +ND  GH VGD+++  ++ +L        ++ RLGG+EF       
Sbjct: 479 KWALFFLDVDRFKYVNDTLGHDVGDELLKVVAVRLKNCLRKSDYIFRLGGDEFTIILNDL 538

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245
           + + + A +A  +RK I   +        ++IT+S GI+      + + T++  AD A+Y
Sbjct: 539 TDDTDMAKVAQKIRKAIA--RPCRIKDHELYITVSIGISIYPDDGDDVETLVKNADIAMY 596

Query: 246 VAKKSGRNR-VVCFSDIENN 264
            AK+   N+    F +  N 
Sbjct: 597 AAKEE--NQGYRFFIEEMNR 614


>gi|85710903|ref|ZP_01041964.1| putative two-component hybrid sensor and regulator [Idiomarina
           baltica OS145]
 gi|85695307|gb|EAQ33244.1| putative two-component hybrid sensor and regulator [Idiomarina
           baltica OS145]
          Length = 548

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 60/161 (37%), Positives = 80/161 (49%), Gaps = 8/161 (4%)

Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            +  D L+G  N   F  +L         Y E L+IV FDID+FK+INDNFGH  GD+V+
Sbjct: 388 QAERDPLTGAYNRRFFTEALETLVYRSERYEESLAIVTFDIDHFKRINDNFGHEAGDRVL 447

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L   L  +        R GGEEF+      + Q+A   A   R  +E   I  S G  
Sbjct: 448 IELVQTLGRLVRESDIFARTGGEEFSLLLPNQTLQQATRTAERFRAALEALVIR-SEGHE 506

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           I +T S G+A   +    + ++  AD+ALY AK  GRN VV
Sbjct: 507 IQVTASFGVAIHHNGATHNEVLRHADKALYAAKSRGRNCVV 547


>gi|116049677|ref|YP_791518.1| membrane sensor domain-containing protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115584898|gb|ABJ10913.1| putative integral membrane sensor domain [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 685

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 13/224 (5%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLS 110
           G+   +    ++V  L+++ I++ +S+L   +      +   L  +   + QL+  D L+
Sbjct: 210 GIDNGWLAVLVIVITLAVIAIALIVSVLDSRLEARTSVLATSLARANRELIQLALHDNLT 269

Query: 111 GLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            L N       L          + + +++F D+D FK +ND +GH +GD ++  +++++ 
Sbjct: 270 KLPNRMLLDDRLEQAIQQAIRDDRRFAVLFMDLDGFKAVNDAYGHHLGDLLLIEVAERIR 329

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   + RLGG+EF          +AA LA  L K I  SQ    S   + I+ S G
Sbjct: 330 ANVRAQDTIARLGGDEFVLLIEAREPADAATLAEKLVKRI--SQPYQISRHEVRISASIG 387

Query: 224 IAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           IA      +    ++  AD A+Y AK  GRN    F    N   
Sbjct: 388 IALYPGDGQTRHELMINADAAMYHAKDQGRNGYCFFESSMNANA 431


>gi|78777526|ref|YP_393841.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78498066|gb|ABB44606.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
          Length = 564

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 111/242 (45%), Gaps = 17/242 (7%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI--LVENLSLVIISITISLLLGY--- 84
              IF       +IF     L+Y+G+       YI     ++ L+I ++ +S L+ Y   
Sbjct: 322 LIKIFLIAHTLYLIFSVYALLYYLGIA---DANYISSHGTSIGLIIEAMLLSYLVSYKFI 378

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------SL-GSYNEKLSIVFFDID 137
           I     +E  +    +  L+  D ++ L N   F         L       LSI+  DID
Sbjct: 379 IMEQEKEEEKLKQIELKLLASTDSMTKLYNRRYFTEISAKVLHLSKREKNNLSILMIDID 438

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND +GH  GD+V+  LS  LV        V R GGEEF      +S ++A  +A 
Sbjct: 439 RFKVVNDTYGHQFGDEVLIALSRLLVEHQRKSDIVCRYGGEEFVILLPNTSLKDATNIAQ 498

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRV 255
            +R ++E+  +   +      TIS G+A+    H++ I   + RAD ALY AK SGRNRV
Sbjct: 499 KIRILVESLTMEAPTNKEFKFTISIGVAQIDVEHEDDIKFALKRADDALYRAKNSGRNRV 558

Query: 256 VC 257
             
Sbjct: 559 CA 560


>gi|312915648|dbj|BAJ39622.1| hypothetical protein STMDT12_C46790 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
          Length = 354

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 74/275 (26%), Positives = 124/275 (45%), Gaps = 22/275 (8%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58
              IW  H      +   + F  +  S+   +FI ++ F ANI  F +  L P       
Sbjct: 78  LGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 137

Query: 59  ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112
                GL  + +  L +V I+I   +   Y   +  ++ +L      ++ LS +D L+GL
Sbjct: 138 NGNEQGLRILYLLTLPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 197

Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +     S    ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 198 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 257

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      +  Q+A   A  +R+ + + +I      S+  ++T+S GIA 
Sbjct: 258 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 317

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                 I   I +AD+ALY AK  GRN ++   D+
Sbjct: 318 LT-DRNIGDAIEKADKALYEAKHLGRNHILVSDDM 351


>gi|332529867|ref|ZP_08405819.1| diguanylate cyclase/phosphodiesterase [Hylemonella gracilis ATCC
           19624]
 gi|332040661|gb|EGI77035.1| diguanylate cyclase/phosphodiesterase [Hylemonella gracilis ATCC
           19624]
          Length = 1018

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 92/190 (48%), Gaps = 10/190 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
           +I   + +E   +  ++  L+  D L+GL N   F   L          +   +++FFD+
Sbjct: 567 WIHEDVTRERQTA-EQLVYLAERDALTGLFNRRRFEDELARFIQESQRRHRHGALLFFDL 625

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK IND FGH  GD V+  ++ ++  +      + RLGG+EFA     + ++EA  LA
Sbjct: 626 DEFKHINDTFGHRAGDAVLIRVASEVGALTRRNELLCRLGGDEFAVLMPDARQEEAEQLA 685

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             + + I      +  G ++ +T S GIA   H       ++  AD A+Y AK+SG+N  
Sbjct: 686 ERIVRAIALIPFRL-DGQNLRLTSSLGIALYPHGSVSAEELVAHADTAMYQAKESGKNAW 744

Query: 256 VCFSDIENNT 265
             +    +++
Sbjct: 745 RLYEPGRDSS 754


>gi|326626235|gb|EGE32580.1| Putative membrane protein [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 304

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 75/275 (27%), Positives = 125/275 (45%), Gaps = 22/275 (8%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58
           F  IW  H      +   + F  +  S+   +FI ++ F ANI  F +  L P       
Sbjct: 28  FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 87

Query: 59  ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112
                GL  + +  L +V I+I   +   Y   +  ++ +L      ++ LS +D L+GL
Sbjct: 88  NGNEQGLRILYLLALPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 147

Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +     S    ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 148 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 207

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      +  Q+A   A  +R+ + + +I      S+  ++T+S GIA 
Sbjct: 208 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 267

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                 I   I +AD+ALY AK  GRN ++   D+
Sbjct: 268 LT-DRNIGDAIEKADKALYEAKHLGRNHILVSDDM 301


>gi|167573836|ref|ZP_02366710.1| ggdef domain protein [Burkholderia oklahomensis C6786]
          Length = 487

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 11/205 (5%)

Query: 63  YILVENLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           +I  + L ++++   + ++ G  +    L+    +  R+ +L+R D L+GL N  AF  +
Sbjct: 278 HIRAQRLGVLMLVFGVVIVTGTALLSRELRWRRHAELRLQRLARTDSLTGLGNRRAFDEN 337

Query: 122 LGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVG 173
           L             LS++F DID FK  ND +GH  GD V+  ++  L   V      V 
Sbjct: 338 LRREWARALRSSRPLSLLFVDIDQFKNYNDCYGHQAGDDVLREVARCLALNVRRAADDVS 397

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-- 231
           R GGEEF      +  + A+ +A  LR+ + +  I     P   +T+S G+         
Sbjct: 398 RYGGEEFVITLPDTDAKSASAIAEHLRRAVYDLDIEHEKSPYRRVTVSIGLVTSHDNAMH 457

Query: 232 PISTIIYRADQALYVAKKSGRNRVV 256
             + ++  AD ALY AK +GRNRV 
Sbjct: 458 SDTALVKMADAALYQAKSTGRNRVC 482


>gi|307151520|ref|YP_003886904.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
 gi|306981748|gb|ADN13629.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
          Length = 324

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 84/184 (45%), Gaps = 11/184 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
            + ++L  +  ++ +L  ID L+ + N   F          L    + L+++F DIDYFK
Sbjct: 133 RLQQQLEAANEKLQRLVSIDGLTQIHNRRRFDECIQFEWQRLAREEQWLALIFIDIDYFK 192

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GH  GD  +  ++  +         F  R GGEEFA     +    A  +A  +
Sbjct: 193 LYNDTYGHQAGDHCLQQVAQTIQNTLQRPADFAARYGGEEFAVILPNTHLAGAKKVAEKI 252

Query: 200 RKIIENSQINIS-SGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R  IEN  I    S  S  ++ S G+       +E    +I +ADQALY AK  GRN +V
Sbjct: 253 RFNIENLHIPHQKSSVSQWVSASLGVVCLIPDAQETPKQLIKKADQALYQAKLQGRNCLV 312

Query: 257 CFSD 260
              +
Sbjct: 313 TVDE 316


>gi|107101158|ref|ZP_01365076.1| hypothetical protein PaerPA_01002190 [Pseudomonas aeruginosa PACS2]
          Length = 685

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 13/224 (5%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLS 110
           G+   +    ++V  L+++ I++ +S+L   +      +   L  +   + QL+  D L+
Sbjct: 210 GIDNGWLAVLVIVITLAVIAIALIVSVLDSRLEARTSVLATSLARANRELIQLALHDNLT 269

Query: 111 GLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            L N       L          + + +++F D+D FK +ND +GH +GD ++  +++++ 
Sbjct: 270 KLPNRMLLDDRLEQAIQQAIRDDRRFAVLFMDLDGFKAVNDAYGHHLGDLLLIEVAERIR 329

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   + RLGG+EF          +AA LA  L K I  SQ    S   + I+ S G
Sbjct: 330 ANVRAQDTIARLGGDEFVLLIEAREPADAATLAEKLVKRI--SQPYQISRHEVRISASIG 387

Query: 224 IAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           IA      +    ++  AD A+Y AK  GRN    F    N   
Sbjct: 388 IALYPGDGQTRHELMINADAAMYHAKDQGRNGYCFFESSMNANA 431


>gi|78060881|ref|YP_370789.1| diguanylate cyclase [Burkholderia sp. 383]
 gi|77968766|gb|ABB10145.1| diguanylate cyclase (GGDEF domain) [Burkholderia sp. 383]
          Length = 527

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 15/210 (7%)

Query: 63  YILVENLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSA 117
           Y    + ++ I S  ++L +G++  S+L     ++   +   +  L+R D L+GL N   
Sbjct: 305 YAAWYDRAIPIGSAMVALAIGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRM 364

Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
              +L     +       LS++F D+DYFK+ ND  GH  GD  +A +   +      P 
Sbjct: 365 LDVTLAREWRRAARSQHALSLLFIDVDYFKRYNDTQGHQAGDDALAAVGHCIAGCLRRPA 424

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AER 227
            +  R GGEEF           A  +A  +R  I +  I   +G S  +T+S G+  +  
Sbjct: 425 DYAARYGGEEFLVVLPDVDTTGAVAIAETIRTGILDLGIRHDAGTSGRLTVSIGVTTSYP 484

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            H + +   +  AD ALY AK+ GRNR+V 
Sbjct: 485 EHDDDMQGALKLADDALYRAKEGGRNRIVV 514


>gi|325293076|ref|YP_004278940.1| diguanylate cyclase [Agrobacterium sp. H13-3]
 gi|325060929|gb|ADY64620.1| diguanylate cyclase [Agrobacterium sp. H13-3]
          Length = 356

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 61/183 (33%), Positives = 96/183 (52%), Gaps = 8/183 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKL-----SIVFFDIDYFKQIN 143
           ++++ +  +   +++  D L+ L N  AF   L S YN  +     +++  DID+FK+IN
Sbjct: 162 MQQVRLELDEYKRIANTDSLTRLSNRRAFDDRLASVYNSSIGLQYTTLILLDIDHFKRIN 221

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGHPVGDK++A ++  +        FV R GGEEFA    G++ +E  ++   +R  +
Sbjct: 222 DTFGHPVGDKILATVASVIRANVRKDGFVARSGGEEFAIILDGNTPEEVMVICERIRLSL 281

Query: 204 ENSQI-NISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E++   N  SG     +TIS G A          +   AD ALY AK++GRNR V + D 
Sbjct: 282 ESTPFRNSRSGADYGTVTISIGFASASQANNPGELYGHADMALYHAKETGRNRSVIYEDG 341

Query: 262 ENN 264
              
Sbjct: 342 MQK 344


>gi|303245323|ref|ZP_07331607.1| diguanylate cyclase with GAF sensor [Desulfovibrio fructosovorans
           JJ]
 gi|302493172|gb|EFL53034.1| diguanylate cyclase with GAF sensor [Desulfovibrio fructosovorans
           JJ]
          Length = 499

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 87/169 (51%), Gaps = 10/169 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +N++   +  D L+ + N  AF   L         Y+  +S++  DID+FK IND FGH 
Sbjct: 312 FNQVKIRADHDGLTRIHNRRAFDERLVEELRRHQRYHHPMSLLMLDIDHFKSINDRFGHL 371

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD V+  +   L     +  F  R GGEEF      ++E+ + +LA  LR +I +++ N
Sbjct: 372 VGDHVLREVGRLLSDTLRSTDFTARYGGEEFTVILPQTAEEPSRVLAERLRGVIGDARFN 431

Query: 210 ISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVV 256
              G    ITIS G+A            ++ +AD+ALY AKK GRN+V 
Sbjct: 432 H-DGQEFSITISIGVATMVPGSLAKRKELLEKADKALYQAKKLGRNQVC 479


>gi|226940026|ref|YP_002795099.1| Diguanylate cyclase [Laribacter hongkongensis HLHK9]
 gi|226714952|gb|ACO74090.1| Diguanylate cyclase [Laribacter hongkongensis HLHK9]
          Length = 350

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 10/176 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           E  ++  R+  L   D L+GL N   F   L         + + L+ +  D D+FK+IND
Sbjct: 168 ENVLNRERLKWLGLTDPLTGLYNRRYFEQRLQEEAQRTRRHGDPLACLMLDADHFKRIND 227

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD V+  L+ ++           R+GGEEFA     +  +   ++A  +R  I 
Sbjct: 228 TWGHQAGDVVLKVLARRVRQQLRGCDVAARIGGEEFAVLLPSTPVRHVQLVAERIRLAIA 287

Query: 205 NSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVC 257
              +++S    + +++S G A             ++ RAD ALY AK++GRNR + 
Sbjct: 288 GEPVHVSPDCVLQVSVSLGAAMLAPGAADISPERLMARADAALYQAKRNGRNRTML 343


>gi|254457729|ref|ZP_05071157.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207086521|gb|EDZ63805.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 595

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 90/186 (48%), Gaps = 11/186 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           LK L     ++   +  D L+ L N   F+  L         Y+ K++++F D+D+FK+I
Sbjct: 152 LKILDEQREQLEYQANHDSLTDLPNRVLFMDRLQQSINIAQRYDNKVALLFIDLDHFKEI 211

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+ GH VGDKV+  +S ++         + RLGG+EF      +   +   +++ +   
Sbjct: 212 NDSLGHGVGDKVLIEVSRRMKNQMRKSDTLSRLGGDEFCIIL--NDIIDIEDMSDIITSG 269

Query: 203 IENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +E  +  +  +G ++++ +S G++         S+++  AD A+Y AK  GRN    + +
Sbjct: 270 MEALKEPMEINGHTLYVGMSIGVSVYPNDGNSASSLLKNADAAMYKAKGDGRNTYCFYDE 329

Query: 261 IENNTC 266
                 
Sbjct: 330 AMTERA 335


>gi|289628325|ref|ZP_06461279.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289650123|ref|ZP_06481466.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330869001|gb|EGH03710.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 1250

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 15/192 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + E   S +RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 799 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQAWVVLMFLDLDRFK 858

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-----L 195
            IND+ GH  GD+++  ++ +L+    +   V R+GG+EF       + +EAA+     +
Sbjct: 859 PINDSLGHAAGDRMLQEMATRLLACVSSDDTVARMGGDEFTLLLQPDTSREAALTRAIHV 918

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  +   +      +  G    +T S GIA      + +S ++  AD A+Y AK+ G+N 
Sbjct: 919 AERILTSL--VTPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNN 976

Query: 255 VVCFSDIENNTC 266
              +    N T 
Sbjct: 977 FQFYQADMNATA 988


>gi|159184874|ref|NP_354678.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
 gi|159140154|gb|AAK87463.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
          Length = 356

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 63/183 (34%), Positives = 97/183 (53%), Gaps = 8/183 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKL-----SIVFFDIDYFKQIN 143
           + ++ +  +   +++  D L+ L N  AF   L S Y+  +     ++V  DID+FK+IN
Sbjct: 162 MHQVRLELDEYKRIANTDSLTRLSNRRAFDDRLASVYDSSIGLQYTTLVLLDIDHFKRIN 221

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGHPVGDK++A ++  +        FV R GGEEFA    G++ +E  ++   +R  +
Sbjct: 222 DTFGHPVGDKILATVASVIRANVRKDGFVARSGGEEFAIILDGNTPEEVMVMCERIRLSL 281

Query: 204 ENSQI-NISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E++   N  SG     +TIS G A        S +   AD ALY AK++GRNR V + D 
Sbjct: 282 ESTPFRNSRSGADYGTVTISIGFASAARASNPSELYGHADTALYHAKETGRNRSVFYEDG 341

Query: 262 ENN 264
             N
Sbjct: 342 MQN 344


>gi|194445805|ref|YP_002043795.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|197249334|ref|YP_002149495.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197262036|ref|ZP_03162110.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|198245322|ref|YP_002218428.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205357485|ref|ZP_02348051.2| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205357672|ref|ZP_02572454.2| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205359903|ref|ZP_02832991.2| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205360535|ref|ZP_02684370.2| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|194404468|gb|ACF64690.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|197213037|gb|ACH50434.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197240291|gb|EDY22911.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197939838|gb|ACH77171.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205321460|gb|EDZ09299.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205330411|gb|EDZ17175.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205342367|gb|EDZ29131.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205348694|gb|EDZ35325.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|321222478|gb|EFX47550.1| Putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
          Length = 308

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/275 (27%), Positives = 125/275 (45%), Gaps = 22/275 (8%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58
           F  IW  H      +   + F  +  S+   +FI ++ F ANI  F +  L P       
Sbjct: 32  FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 91

Query: 59  ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112
                GL  + +  L +V I+I   +   Y   +  ++ +L      ++ LS +D L+GL
Sbjct: 92  NGNEQGLRILYLLALPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 151

Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +     S    ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 152 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 211

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      +  Q+A   A  +R+ + + +I      S+  ++T+S GIA 
Sbjct: 212 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 271

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                 I   I +AD+ALY AK  GRN ++   D+
Sbjct: 272 LT-DRNIGDAIEKADKALYEAKHLGRNHILVSDDM 305


>gi|322615719|gb|EFY12639.1| hypothetical protein SEEM315_11144 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618780|gb|EFY15669.1| hypothetical protein SEEM971_11408 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322621806|gb|EFY18656.1| hypothetical protein SEEM973_16867 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627531|gb|EFY24322.1| hypothetical protein SEEM974_12706 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322630838|gb|EFY27602.1| hypothetical protein SEEM201_04083 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637944|gb|EFY34645.1| hypothetical protein SEEM202_04839 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642214|gb|EFY38822.1| hypothetical protein SEEM954_00677 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645804|gb|EFY42327.1| hypothetical protein SEEM054_14318 [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651099|gb|EFY47484.1| hypothetical protein SEEM675_13292 [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656645|gb|EFY52933.1| hypothetical protein SEEM965_17245 [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659930|gb|EFY56173.1| hypothetical protein SEEM19N_09329 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322661861|gb|EFY58077.1| hypothetical protein SEEM801_15151 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666393|gb|EFY62571.1| hypothetical protein SEEM507_04169 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672812|gb|EFY68923.1| hypothetical protein SEEM877_16519 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676241|gb|EFY72312.1| hypothetical protein SEEM867_15728 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680726|gb|EFY76764.1| hypothetical protein SEEM180_13498 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684380|gb|EFY80384.1| hypothetical protein SEEM600_16622 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194282|gb|EFZ79479.1| hypothetical protein SEEM581_16595 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197429|gb|EFZ82569.1| hypothetical protein SEEM501_12216 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201454|gb|EFZ86518.1| hypothetical protein SEEM460_20601 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205968|gb|EFZ90930.1| hypothetical protein SEEM020_10035 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212980|gb|EFZ97782.1| hypothetical protein SEEM6152_11543 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215352|gb|EGA00096.1| hypothetical protein SEEM0077_06758 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323223317|gb|EGA07654.1| hypothetical protein SEEM0047_19617 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226156|gb|EGA10373.1| hypothetical protein SEEM0055_17980 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228809|gb|EGA12938.1| hypothetical protein SEEM0052_04145 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236580|gb|EGA20656.1| hypothetical protein SEEM3312_19846 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239920|gb|EGA23967.1| hypothetical protein SEEM5258_01445 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242033|gb|EGA26062.1| hypothetical protein SEEM1156_13742 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247819|gb|EGA31756.1| hypothetical protein SEEM9199_13999 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251541|gb|EGA35412.1| hypothetical protein SEEM8282_18017 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323258092|gb|EGA41769.1| hypothetical protein SEEM8283_07171 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263765|gb|EGA47286.1| hypothetical protein SEEM8284_08439 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265641|gb|EGA49137.1| hypothetical protein SEEM8285_06025 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270086|gb|EGA53534.1| hypothetical protein SEEM8287_18206 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 354

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/275 (27%), Positives = 125/275 (45%), Gaps = 22/275 (8%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58
           F  IW  H      +   + F  +  S+   +FI ++ F ANI  F +  L P       
Sbjct: 78  FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 137

Query: 59  ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112
                GL  + +  L +V I+I   +   Y   +  ++ +L      ++ LS +D L+GL
Sbjct: 138 NGNEQGLRILYLLALPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 197

Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +     S    ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 198 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 257

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      +  Q+A   A  +R+ + + +I      S+  ++T+S GIA 
Sbjct: 258 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 317

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                 I   I +AD+ALY AK  GRN ++   D+
Sbjct: 318 LT-DRNIGNAIEKADKALYEAKHLGRNHILVSDDM 351


>gi|257485508|ref|ZP_05639549.1| sensory box protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|320329233|gb|EFW85230.1| sensory box protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330987413|gb|EGH85516.1| sensory box protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331010684|gb|EGH90740.1| sensory box protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 729

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 104/214 (48%), Gaps = 19/214 (8%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +G   +L  ++  + ++ T  LL+   +   + +L  +  ++  L+  D L+GL N +  
Sbjct: 245 HGAPLVLDISVEFITLNNTACLLM---NARDIGQLKTAQAQVQHLAYHDPLTGLPNRALL 301

Query: 119 ISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           +  L          N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         
Sbjct: 302 MDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 361

Query: 172 VGRLGGEEFAAAALGSS------EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
           V RLGG+EF     G         Q+  +LA++LR+++         G  + +T S GI 
Sbjct: 362 VARLGGDEFVVLICGLDGTRDEVTQQVRVLADNLRELLAEPMF--LDGHRLQVTPSIGIV 419

Query: 226 ERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
                    + ++ RAD ALY AK SGRN    F
Sbjct: 420 LIPDDGLAPADLLKRADIALYRAKDSGRNASQFF 453


>gi|91203280|emb|CAJ72919.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 857

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 12/206 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +   +LSL  I      +  Y++    + E   +  RI  L+  D L+ L N   F   L
Sbjct: 386 LFWTSLSLSAIKSNEGFISHYLAIMEDITEHKQAEERIHYLAYYDSLTALPNRELFHDRL 445

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                      + L++ F DID FK++ND  GH  GD+++  ++D+L         V R 
Sbjct: 446 NMAIIHAHRKQQMLAVAFIDIDRFKKVNDTLGHSTGDRLLKIIADRLKSCIREEDTVSRQ 505

Query: 176 GGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF       S  ++A  +   + K ++  +  I     + I+ S GIA         
Sbjct: 506 GGDEFVLLLTEISRMEDANDVTQRILKKLK--EPVIIDDHDLCISASIGIALYPGDGTTA 563

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
             ++  AD A+Y++K+SGR+    +S
Sbjct: 564 EALLKNADSAMYISKESGRDNYHFYS 589


>gi|254240071|ref|ZP_04933393.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126193449|gb|EAZ57512.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 685

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 13/224 (5%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLS 110
           G+   +    ++V  L+++ I++ +S+L   +      +   L  +   + QL+  D L+
Sbjct: 210 GIDNGWLAVLVIVITLAVIAIALIVSVLDSRLEARTSVLATSLARANRELIQLALHDNLT 269

Query: 111 GLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            L N       L          + + +++F D+D FK +ND +GH +GD ++  +++++ 
Sbjct: 270 KLPNRMLLDDRLEQAIQQAIRDDRRFAVLFMDLDGFKAVNDAYGHHLGDLLLIEVAERIR 329

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   + RLGG+EF          +AA LA  L K I  SQ    S   + I+ S G
Sbjct: 330 ANVRAQDTIARLGGDEFVLLIEAREPADAATLAEKLVKRI--SQPYQISRHEVRISASIG 387

Query: 224 IAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           IA      +    ++  AD A+Y AK  GRN    F    N   
Sbjct: 388 IALYPGDGQTRHELMINADAAMYHAKDQGRNGYCFFESSMNANA 431


>gi|15596924|ref|NP_250418.1| MucR [Pseudomonas aeruginosa PAO1]
 gi|254234825|ref|ZP_04928148.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|48474964|sp|Q9I310|Y1727_PSEAE RecName: Full=Uncharacterized signaling protein PA1727
 gi|9947703|gb|AAG05116.1|AE004599_1 MucR [Pseudomonas aeruginosa PAO1]
 gi|126166756|gb|EAZ52267.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 685

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 13/224 (5%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLS 110
           G+   +    ++V  L+++ I++ +S+L   +      +   L  +   + QL+  D L+
Sbjct: 210 GIDNGWLAVLVIVITLAVIAIALIVSVLDSRLEARTSVLATSLARANRELIQLALHDNLT 269

Query: 111 GLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            L N       L          + + +++F D+D FK +ND +GH +GD ++  +++++ 
Sbjct: 270 KLPNRMLLDDRLEQAIQQAIRDDRRFAVLFMDLDGFKAVNDAYGHHLGDLLLIEVAERIR 329

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   + RLGG+EF          +AA LA  L K I  SQ    S   + I+ S G
Sbjct: 330 ANVRAQDTIARLGGDEFVLLIEAREPADAATLAEKLVKRI--SQPYQISRHEVRISASIG 387

Query: 224 IAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           IA      +    ++  AD A+Y AK  GRN    F    N   
Sbjct: 388 IALYPGDGQTRHELMINADAAMYHAKDQGRNGYCFFESSMNANA 431


>gi|83592608|ref|YP_426360.1| diguanylate cyclase [Rhodospirillum rubrum ATCC 11170]
 gi|83575522|gb|ABC22073.1| Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           domain [Rhodospirillum rubrum ATCC 11170]
          Length = 632

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 91/179 (50%), Gaps = 8/179 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFK 140
             + E   +   + +L+ ID L+G+LN  +F             +  +LS++  D D+FK
Sbjct: 445 RDITERKATEETLRRLANIDGLTGVLNRRSFTEESELLLSLANRHGRRLSMMIVDADHFK 504

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GH  GD+V+  L+ ++  V      +GR+GGEEFA     + ++ A  LA  + 
Sbjct: 505 GVNDTYGHDAGDRVLKALTGEIAGVLRKTDLLGRIGGEEFAILLPETDQEGAEGLAWRVV 564

Query: 201 KIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             I   ++ +  G  + +T+S G++ R         ++  AD ALY AK  GR+RV CF
Sbjct: 565 LAIRALEVPLPEGGVLKVTVSVGVSCRNTEAATFDWMLKEADTALYAAKHGGRDRVACF 623


>gi|115360197|ref|YP_777335.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
 gi|115285485|gb|ABI91001.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
          Length = 510

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 60/210 (28%), Positives = 94/210 (44%), Gaps = 18/210 (8%)

Query: 72  VIISITISLLLGYIS------GSILKELFISYNRISQLSRIDCLSGLLNHSAFI------ 119
           +  ++ + L   +I+         L+   I+ +++ +L+  D L+GL N   F       
Sbjct: 302 IWTAVLMGLFTAFIAWGSLALSRELRRRQIAESKLYRLAHTDSLTGLDNRGTFDAVLAKE 361

Query: 120 -SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGG 177
                     LS++F D+D+FK  ND +GH  GD V+  ++             V R GG
Sbjct: 362 AQRASRSGRPLSVLFVDVDHFKAFNDYYGHLAGDDVLRRVAQSASRCLRRDSDHVARYGG 421

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTI 236
           EEF      +  + AA +A  +R+ I    I     P  H+T S G A         + +
Sbjct: 422 EEFVVTLPDTDARGAATVAETIRRAIAGLDIAHGRSPYGHVTTSIGTATATGGRVNAAAL 481

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           + +AD+ALY AK  GRNRV   SD E +T 
Sbjct: 482 LRQADEALYRAKSGGRNRV---SDAEASTA 508


>gi|148256883|ref|YP_001241468.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Bradyrhizobium sp. BTAi1]
 gi|146409056|gb|ABQ37562.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Bradyrhizobium sp. BTAi1]
          Length = 833

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 101/207 (48%), Gaps = 12/207 (5%)

Query: 67  ENLSLVIISITISLLLGY---ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
             L+     I  +L       +S    ++L ++  R+ +L++ D L+GL N + F+  + 
Sbjct: 333 RALAFYAAGIATTLFFAVYLVLSSRNARQLALANRRVLELAQTDALTGLANRAFFLEEME 392

Query: 124 SYNE----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
             N+    + ++   D+D FK +ND+ GH  GD+++  ++ +L         + RLGG+E
Sbjct: 393 RINDEKGGRFTVFLLDLDRFKNVNDSLGHGAGDELLVQVAQRLRSQLREEDVLARLGGDE 452

Query: 180 FAAAALGSSEQE--AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTI 236
           FA    G S+Q   A  LA  + ++I   +    SG  + I  S GI+    H      +
Sbjct: 453 FALIQAGFSDQRASATELAQRITRLIA--EPFQISGQRVEIGTSIGISLAPQHGRDQEHL 510

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIEN 263
           + +AD ALY +K +GR+    + D+ +
Sbjct: 511 LKKADLALYRSKSAGRSCYTMYDDVMS 537


>gi|316933637|ref|YP_004108619.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris DX-1]
 gi|315601351|gb|ADU43886.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris DX-1]
          Length = 457

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 81/165 (49%), Gaps = 9/165 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N     S L        +  + L+++  DID+FK IND++GH  GD V
Sbjct: 290 EMAITDGLTGLHNRRYMESHLATLAEQASARGKPLALMILDIDFFKSINDSYGHDAGDDV 349

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG- 213
           +   + ++           R GGEEF      +    A ++A  LR+ I      +  G 
Sbjct: 350 LREFALRIKKSIRGIDLACRYGGEEFVIVMPETDLHVAQMVAERLRRAIAGEPFAVEKGT 409

Query: 214 PSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
             I +TIS G++      EPI  ++ RAD ALY AK  GRNRVV 
Sbjct: 410 RRIEVTISIGLSTLERKGEPIPDLLKRADTALYRAKHDGRNRVVA 454


>gi|168234685|ref|ZP_02659743.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194738368|ref|YP_002117468.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194713870|gb|ACF93091.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197291857|gb|EDY31207.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 304

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/275 (27%), Positives = 125/275 (45%), Gaps = 22/275 (8%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58
           F  IW  H      +   + F  +  S+   +FI ++ F ANI  F +  L P       
Sbjct: 28  FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 87

Query: 59  ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112
                GL  + +  L +V I+I   +   Y   +  ++ +L      ++ LS +D L+GL
Sbjct: 88  NGNEQGLRILYLLALPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 147

Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +     S    ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 148 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 207

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      +  Q+A   A  +R+ + + +I      S+  ++T+S GIA 
Sbjct: 208 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIA- 266

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                 I   I +AD+ALY AK  GRN ++   D+
Sbjct: 267 PLADRNIGDAIEKADKALYEAKHLGRNHILVSDDM 301


>gi|71906795|ref|YP_284382.1| diguanylate cyclase with PAS/PAC sensor [Dechloromonas aromatica
           RCB]
 gi|71846416|gb|AAZ45912.1| diguanylate cyclase with PAS/PAC sensor [Dechloromonas aromatica
           RCB]
          Length = 469

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 59/172 (34%), Positives = 84/172 (48%), Gaps = 7/172 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L  S  R   LS+ D L+GL N           +   G Y   LS++  D D FK +ND 
Sbjct: 293 LRESEERYRSLSQTDSLTGLFNSRHLHEQLPNELERAGRYGRPLSLLVLDCDNFKCVNDR 352

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GDKV+  L+  +        F  R GGEEF      ++ Q A  +A  LR    +
Sbjct: 353 YGHLGGDKVLQSLATAIGHCLRRSDFAFRYGGEEFVVLLPETAIQAALAIAERLRSQFAS 412

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +    SG +I  T+S G+AE    E  ++++ RAD+A Y+AK  G+N VV 
Sbjct: 413 IETPAPSGDAICCTVSIGVAECVPGESEASLVRRADEACYMAKARGKNCVVM 464


>gi|320324868|gb|EFW80940.1| sensory box protein [Pseudomonas syringae pv. glycinea str. B076]
          Length = 729

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 104/214 (48%), Gaps = 19/214 (8%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +G   +L  ++  + ++ T  LL+   +   + +L  +  ++  L+  D L+GL N +  
Sbjct: 245 HGAPLVLDISVEFITLNNTACLLM---NARDIGQLKTAQAQVQHLAYHDPLTGLPNRALL 301

Query: 119 ISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           +  L          N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         
Sbjct: 302 MDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 361

Query: 172 VGRLGGEEFAAAALGSS------EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
           V RLGG+EF     G         Q+  +LA++LR+++         G  + +T S GI 
Sbjct: 362 VARLGGDEFVVLICGLDGTRDEVTQQVRVLADNLRELLAEPMF--LDGHRLQVTPSIGIV 419

Query: 226 ERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
                    + ++ RAD ALY AK SGRN    F
Sbjct: 420 LIPDDGLAPADLLKRADIALYRAKDSGRNASQFF 453


>gi|86749641|ref|YP_486137.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
 gi|86572669|gb|ABD07226.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
          Length = 350

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 60/182 (32%), Positives = 93/182 (51%), Gaps = 9/182 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDI 136
            +  S + ++  +   + +L+  D ++G+ N   F+       +    Y   LS +  DI
Sbjct: 145 MLIYSDVTDIVRNAEELERLATTDGMTGIFNRRHFLTLADREWARARRYGRPLSCLMIDI 204

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK IND+FGH VGD +I  L+            + R+GGEEFA     +   +A  +A
Sbjct: 205 DHFKSINDDFGHQVGDDMIVHLAKLARDCKRDCDVLARIGGEEFALLLPETDLPQALAVA 264

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             LR  +  S + ++SG S+  T+S G A      + IS ++  AD+ALY AK  GRNRV
Sbjct: 265 ERLRGEVAASSLLMASG-SVRATVSIGAATSAATIDGISDLMRAADRALYEAKHGGRNRV 323

Query: 256 VC 257
           VC
Sbjct: 324 VC 325


>gi|23006783|ref|ZP_00048946.1| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 308

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 101/227 (44%), Gaps = 10/227 (4%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQL 103
            I N+ L    +   + LE      L++V++   +++L   + G  L+        +++L
Sbjct: 60  LILNVALGTRDIEADW-LEKSWGIALAVVVLC-GLTVLFSLLLGQQLRRSTAMQAELTRL 117

Query: 104 SRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           SR D L+GL N   F         +     + L+++  D+D+FK  ND FGH VGD V+ 
Sbjct: 118 SRTDSLTGLPNRRHFEEFFERAWKAAARERKPLALLIVDVDHFKGYNDRFGHAVGDTVLK 177

Query: 157 FLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
            ++  L            R+GGEEF     G+    A  +A  +   +    +  S    
Sbjct: 178 GIAHSLTASLHRPQDLPARVGGEEFVVLLPGTDRAGALQVAERIHAAVAGFALPSSGIAC 237

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             +T+S G+A    K     +  RAD +LY AK+ GRN+  C  + +
Sbjct: 238 GTLTVSIGLAVGNGKGATRDLYARADASLYEAKRGGRNQTKCADEAD 284


>gi|326794109|ref|YP_004311929.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinomonas mediterranea MMB-1]
 gi|326544873|gb|ADZ90093.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinomonas mediterranea MMB-1]
          Length = 718

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 7/180 (3%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHS----AFISSLGSYNEKLSIVFFDIDYFKQIND 144
            +  L  +  ++  L++ D L+ L N +     F   +    ++++++F D+D FK +ND
Sbjct: 272 DIDALKKTQQQVEWLAKHDSLTQLPNRASLFDFFQKCIDHGTDRMALLFVDLDRFKNVND 331

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH +GD+++  ++ +++        V R GG+EF      +SE +A  +A DLR  + 
Sbjct: 332 TLGHRIGDQLLVAVAKRMLSTIAEGSCVVRQGGDEFIILLPNTSESDAQKVATDLRMALS 391

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             +  +     I IT S GI+        + T+  RAD A+Y AK+SGRNR   F+    
Sbjct: 392 K-RFQLEQHQLI-ITPSIGISLYPKDGRDLDTLYKRADTAMYRAKQSGRNRFAMFTQEMQ 449


>gi|291571291|dbj|BAI93563.1| PleD-like protein [Arthrospira platensis NIES-39]
          Length = 652

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 11/194 (5%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNE 127
           S+   + +    G +  +L      + +L+ +D L+G+ N   F          L    E
Sbjct: 454 SLATPIAVAIQQGELHAKLQTVNQELERLASLDGLTGVANRRQFDIHLKREWQRLLREPE 513

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALG 186
            +S++  D+D+FK  ND +GH VGD+ +  ++  L      +     R GGEEF      
Sbjct: 514 PISVIMCDVDFFKAYNDTYGHQVGDECLKQIAKILENCAQRSTDLASRYGGEEFVIVLPN 573

Query: 187 SSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIA--ERCHKEPISTIIYRADQA 243
           +  + A  +A+ ++  +   +I       S ++T+S G+A     +     ++I  AD A
Sbjct: 574 TGIKGALQVADRIQHQMRALEIEHKKSEVSDYVTLSLGVACEVPSNAHSPESLIKLADAA 633

Query: 244 LYVAKKSGRNRVVC 257
           LY AK  GRN V+ 
Sbjct: 634 LYEAKSKGRNCVIA 647


>gi|322418862|ref|YP_004198085.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Geobacter sp.
           M18]
 gi|320125249|gb|ADW12809.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. M18]
          Length = 705

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 23/200 (11%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
             + E   +  +I  L+  D L+GL N   F+  L          +  L+++F D+D FK
Sbjct: 250 QDITERKRAEEQIRLLAYYDALTGLPNRRFFLQQLEQALVFANRNDRMLAVLFLDLDRFK 309

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG------------RLGGEEFAAAALGSS 188
            +ND  GH VGD+++  ++D+L+        +             RLGG+EF      S 
Sbjct: 310 LVNDTLGHGVGDRLLQDVADRLLRCVRRSDCLARAEGDCPPSLVSRLGGDEFTIML--SD 367

Query: 189 EQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYV 246
            +    +A   R+I+E   +  S  G  + ++ S GI+         S +I  AD A+Y 
Sbjct: 368 IEHFQDVAKVARRILEAVSVPYSLEGQEVFVSTSIGISLYPFDASTASDLIRNADGAMYQ 427

Query: 247 AKKSGRNRVVCFSDIENNTC 266
           AK+ GRN    + +  N   
Sbjct: 428 AKEQGRNGYQIYDESMNAKA 447


>gi|152987701|ref|YP_001346112.1| hypothetical protein PSPA7_0717 [Pseudomonas aeruginosa PA7]
 gi|150962859|gb|ABR84884.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 1245

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + +  L  +  R+   +  D L+GL N   F   L          +   +++F D+D FK
Sbjct: 792 ADISTLKYAQARLDYQAHHDPLTGLPNRLLFEHRLDHALDEAREESRPGAVLFIDLDRFK 851

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
            IND+ GHP GD ++  ++++L         V RLGG+EF     G  ++ +A  +A  L
Sbjct: 852 HINDSLGHPTGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARKL 911

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 +    + G    ++ S GIA      +   T++  AD A+Y AK  GR+R+  +
Sbjct: 912 LNAF--TAPFQADGHEFFVSASIGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSRIEYY 969

Query: 259 S 259
           +
Sbjct: 970 T 970


>gi|148254453|ref|YP_001239038.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1]
 gi|146406626|gb|ABQ35132.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1]
          Length = 382

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 15/205 (7%)

Query: 66  VENLSLVIISITISLLLGYISGSILK-------ELFISYNRISQLSRIDCLSGLLNHSAF 118
           +  L + +++I   + LG  S S+ +       +L  +Y RI +L+ +D L+G LN  + 
Sbjct: 177 LATLLVFVLTIAGCMFLGIFSSSLRESLYQRGLKLKEAYRRIEELAELDELTGALNRRSI 236

Query: 119 ISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           +  L           +  S++  D+D+FK+IND  GHP GD V+   +  +     +   
Sbjct: 237 MHVLEEELTRSRQTGKPCSVMLIDLDWFKRINDEHGHPTGDDVLRTFAITMFANIRSSDR 296

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
            GR GGEEF     G+    A  LA  LR+II +   +  S   + +T SAG+A     E
Sbjct: 297 FGRYGGEEFLLVLPGAPLDPACRLAERLRQIIADLDWSAFS-AGLQVTFSAGVATSRGDE 355

Query: 232 PISTIIYRADQALYVAKKSGRNRVV 256
              +++ RAD+ALY +K  GRNRV 
Sbjct: 356 TTESLLSRADRALYASKAQGRNRVT 380


>gi|292669740|ref|ZP_06603166.1| sensory box/GGDEF domain protein [Selenomonas noxia ATCC 43541]
 gi|292648537|gb|EFF66509.1| sensory box/GGDEF domain protein [Selenomonas noxia ATCC 43541]
          Length = 595

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 88/186 (47%), Gaps = 15/186 (8%)

Query: 81  LLGYISGSIL---KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLS 130
           +L ++S  I    +EL  +  R+SQL+  D L+ LLN       L             LS
Sbjct: 402 MLAFMSHFIRVSEEELHTANQRLSQLASRDALTNLLNRREMERLLNAAVEHSQQEKTPLS 461

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  DID+FK IND +GH +GDKV+  +++ +           R GG+EF     G+   
Sbjct: 462 VILMDIDHFKGINDTYGHDMGDKVLLTVAETISHTIRGSDAGCRWGGDEFFIILQGAPLT 521

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKK 249
            A  +   +R+ +E  ++        HITIS G+A           +   AD+ALY AK 
Sbjct: 522 VAGRVGERIRRKVEGFEMPFHQ----HITISVGVASFDPDRDNELQLFKNADEALYQAKA 577

Query: 250 SGRNRV 255
           +GRN V
Sbjct: 578 AGRNAV 583


>gi|254562232|ref|YP_003069327.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens
           DM4]
 gi|254269510|emb|CAX25476.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL), with
           GAF and two PAS/PAC sensor domains [Methylobacterium
           extorquens DM4]
          Length = 1003

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 11/209 (5%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G E I V   + V+       +    + +   E   +   I  ++R D L+GL N   F 
Sbjct: 536 GGERIWVSETAWVVRDAAGRPIWFEGTVADATERKRAQALIEHMARHDALTGLPNRRLFQ 595

Query: 120 SSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
            +L             + ++  D+D FK +ND FGHP GD ++  ++ +L         V
Sbjct: 596 ETLAREIDGALRDGGSVVVLCCDLDRFKAVNDTFGHPAGDALLRVVAGRLRATLREGDVV 655

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERC-HK 230
            RLGG+EFA       +Q    +A   R++I+ +   +   G +  + +S G+A    H 
Sbjct: 656 ARLGGDEFAIILPSRGKQ--RRIAAFARRLIQAAGRPVDLGGRATTVGVSIGVAVWPKHG 713

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +   T+   AD ALY AK SGRN    + 
Sbjct: 714 DNADTLFKNADIALYRAKDSGRNTFRFYE 742


>gi|157145252|ref|YP_001452571.1| hypothetical protein CKO_00988 [Citrobacter koseri ATCC BAA-895]
 gi|157082457|gb|ABV12135.1| hypothetical protein CKO_00988 [Citrobacter koseri ATCC BAA-895]
          Length = 538

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 101/202 (50%), Gaps = 10/202 (4%)

Query: 69  LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNH-------SAFIS 120
           L L+    T+ LL+ ++    ++  +F+  + +   +  D L+ L N           I 
Sbjct: 328 LGLLWALFTMMLLISWVVIRKMVSNMFVLQSSLQWQAWHDPLTRLYNRGALFERARVLIQ 387

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 +  S++  D+D+FK +ND FGH  GD+V++  +  +     +    GR+GGEEF
Sbjct: 388 RCHEQRQPFSVIQIDLDHFKSVNDRFGHQAGDRVLSHAAGLISGTIRSHDLAGRVGGEEF 447

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G++  +AA +A  +R+ + + +I I+ G ++ I+ S G+  A+         +  
Sbjct: 448 CIVLPGTTLVQAAQIAERIRQRVNDKEILIAKGTTLRISASLGVSGAQENGDYDFEQLQS 507

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRN+V    D
Sbjct: 508 LADRRLYLAKQAGRNQVCVRDD 529


>gi|91976934|ref|YP_569593.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91683390|gb|ABE39692.1| diguanylate cyclase [Rhodopseudomonas palustris BisB5]
          Length = 355

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 60/186 (32%), Positives = 94/186 (50%), Gaps = 9/186 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDY 138
           S   +  L  +   I   S  D L+GL N   F         S  +    LS++  DID+
Sbjct: 160 SKQEITNLQANLEEIRAESLTDPLTGLGNRKHFDRVVTEAVRSAAATRLPLSLLMMDIDH 219

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK  NDN+GH  GD+V+  +   L           R GGEEFA     +  ++A ++A+D
Sbjct: 220 FKSFNDNYGHLTGDQVLRLVGMTLKQTIKNKDIPSRYGGEEFAVVLPNTPLRQALVIADD 279

Query: 199 LRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +R+ + + ++   S   I   +T+SAG++    ++    +I RAD  LY AK++GRNRV+
Sbjct: 280 IRRTVMSKELKKKSTGEILGRVTLSAGVSTLKPEDDADALIERADACLYSAKRNGRNRVI 339

Query: 257 CFSDIE 262
           C +D E
Sbjct: 340 CETDPE 345


>gi|90021869|ref|YP_527696.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
 gi|89951469|gb|ABD81484.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
          Length = 820

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 51/200 (25%), Positives = 92/200 (46%), Gaps = 16/200 (8%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVF 133
           ++  +  S + EL  +  ++  ++  D L+ L N S  +  L     K        +++F
Sbjct: 351 VVSLVVSSDITELKRTQAQMEHMAYHDALTDLPNRSYLVERLEEEVRKANHGQYYGALLF 410

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ--- 190
            D+D FK IND+ GHP GD V+  ++ +L  V      V RLGG+EF        ++   
Sbjct: 411 IDLDQFKYINDSLGHPAGDGVLKHVAQRLTAVTKENDLVVRLGGDEFVVVLTNLGDELPT 470

Query: 191 ---EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYV 246
               A  +   LR+ I  S+ +  +   +H+T S GI     ++  +  ++  AD A+Y 
Sbjct: 471 SILRAEDIGERLRRYI--SEPHFYNDLQLHVTCSVGIVMYPEEDAGVHELLRYADTAMYQ 528

Query: 247 AKKSGRNRVVCFSDIENNTC 266
            K+ GR+ +  F+    +  
Sbjct: 529 VKEQGRDAIQFFNKYMADKA 548


>gi|134291543|ref|YP_001115312.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
 gi|134134732|gb|ABO59057.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
          Length = 516

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 88/199 (44%), Gaps = 10/199 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128
           +LV       ++L  +    L+    + + +  L+R D L+GL N  +F   L     + 
Sbjct: 290 ALVGTFGAAFIVLSMVLSKQLRRRMRAESELVLLARTDGLTGLNNRRSFGEVLEREWRRA 349

Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFA 181
                  S++F D+D FK  ND +GH  GD  +A ++  +      P     R GGEEF 
Sbjct: 350 QRAHSVFSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTAARYGGEEFV 409

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYR 239
                +  Q A  +A  +R  I++  +         +T S G+A     +      +I  
Sbjct: 410 VLLPDTPRQGAIEIAERIRGAIDDLALEHVGSEYGRVTASIGMASSTPGQDGDPGALIKA 469

Query: 240 ADQALYVAKKSGRNRVVCF 258
           AD+ALY AK +GRN+V  F
Sbjct: 470 ADEALYYAKATGRNKVSTF 488


>gi|146339674|ref|YP_001204722.1| hypothetical protein BRADO2669 [Bradyrhizobium sp. ORS278]
 gi|146192480|emb|CAL76485.1| Conserved hypothetical protein; putative membrane protein; Putative
           diguanylate cyclase (GGDEF domain) [Bradyrhizobium sp.
           ORS278]
          Length = 382

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 101/205 (49%), Gaps = 15/205 (7%)

Query: 66  VENLSLVIISITISLLLGYISGSIL-------KELFISYNRISQLSRIDCLSGLLNHSAF 118
           +  L + +++I   + LG  S  +        ++L  +Y RI +L+ +D L+G LN  + 
Sbjct: 177 LATLLVFLLTIAGCMFLGIFSSGLRETLYLRGQKLKEAYRRIEELAELDELTGALNRRSI 236

Query: 119 IS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           +                 SIV  D+D+FK+IND  GHP GD V+   +  +         
Sbjct: 237 MQVLDEEMARCRQAGRPCSIVLIDLDWFKRINDTHGHPTGDDVLRTFAITMYANIRGSDR 296

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
            GR GGEEF     G+  + AA LA  LR+II     +  S   + +T SAG+A R   E
Sbjct: 297 FGRYGGEEFLLVLPGAPAEPAARLAERLRRIIAELDWSAFS-AGLQVTFSAGVATRRGDE 355

Query: 232 PISTIIYRADQALYVAKKSGRNRVV 256
              +++ RAD ALY +K +GRNRV 
Sbjct: 356 TAESLLARADHALYDSKANGRNRVT 380


>gi|309778893|ref|ZP_07673663.1| GAF domain/GGDEF domain protein [Ralstonia sp. 5_7_47FAA]
 gi|308922240|gb|EFP67867.1| GAF domain/GGDEF domain protein [Ralstonia sp. 5_7_47FAA]
          Length = 348

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 68/211 (32%), Positives = 103/211 (48%), Gaps = 15/211 (7%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           PF   E  L+++L+  + S      L     SIL EL ++       S  D + G+ N  
Sbjct: 138 PFEQAERELLDDLASWVESGFRERELSETQRSILTELQVA----RHESLTDPMLGIWNRR 193

Query: 117 AFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
           A +  L         Y + LS++  D+D+FK++ND +GHP GD V+  ++ +L V     
Sbjct: 194 AAMELLTRECGHAMRYGQPLSLLVVDVDHFKRVNDTYGHPAGDAVLVEIARKLRVNARPV 253

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
             VGR GGEEF      ++  +A  +A  LR  +E+ +I       I  TIS G+A    
Sbjct: 254 DAVGRYGGEEFLVLLPDTTTTQATGIAERLRSAVESLEIATPE-ADIRCTISVGLASCEQ 312

Query: 230 KE---PISTIIYRADQALYVAKKSGRNRVVC 257
            +     + +I RAD AL  AK+ GRNRV+ 
Sbjct: 313 GQNPCTPTDLIMRADAALLAAKRLGRNRVIF 343


>gi|167588829|ref|ZP_02381217.1| diguanylate cyclase (GGDEF domain) [Burkholderia ubonensis Bu]
          Length = 511

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 59/211 (27%), Positives = 96/211 (45%), Gaps = 18/211 (8%)

Query: 72  VIISITISLLLGYISG------SILKELFISYNRISQLSRIDCLSGLLNHSAFI------ 119
           + I + ++     IS         LK   ++ +++ +L+  D L+GL N   F       
Sbjct: 302 IWIGVLMAAFTAIISAGSLLLSRELKRRQVAESKLYRLAHTDALTGLDNRGRFDAVLAQE 361

Query: 120 -SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ-LVVVFGTPMFVGRLGG 177
                     LS++F D+D+FK  ND +GH  GD V+  ++   L  +      V R GG
Sbjct: 362 AQRATRSGRPLSVLFIDVDHFKSFNDYYGHQAGDNVLRQVAQCALRCLRRPSDHVARYGG 421

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PIST 235
           EEF      +  + AA++A  +R+ I    +     P   +T+S G A          +T
Sbjct: 422 EEFVVTLPDTDARGAAVVAEAIRRAIAGLDVEHVMSPYGLVTVSIGTATTTRDRAINAAT 481

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           ++  AD+ALY AK SGRNRV  + +  + T 
Sbjct: 482 LLKLADEALYEAKSSGRNRV--WDNARSRTA 510


>gi|78063244|ref|YP_373152.1| diguanylate cyclase [Burkholderia sp. 383]
 gi|77971129|gb|ABB12508.1| diguanylate cyclase [Burkholderia sp. 383]
          Length = 510

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 90/199 (45%), Gaps = 15/199 (7%)

Query: 72  VIISITISLLLGYIS------GSILKELFISYNRISQLSRIDCLSGLLNHSAFI------ 119
           V   + + L  G+I+         LK   ++ +++ +L+  D L+G+ N   F       
Sbjct: 302 VWTVVLMCLFTGFIAWGSLALSRELKRRQVAESKLYRLAHTDALTGVDNRGTFDTVLAKE 361

Query: 120 -SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGG 177
                     LS++F D+D+FK  ND +GHP GD V+  ++             V R GG
Sbjct: 362 AQRASRSGRPLSVLFVDVDHFKAFNDYYGHPAGDDVLRRVAQTASRCLRRDSDHVARYGG 421

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTI 236
           EEF      +  Q A  +A  +R+ I    I  +  P   +T S G A         +T+
Sbjct: 422 EEFVVTLPDTDAQGALTVAEGIRRAIAALGIEHAKSPYGRVTASIGAATSTDGRVNAATL 481

Query: 237 IYRADQALYVAKKSGRNRV 255
           + RAD+ALY AK  GRNRV
Sbjct: 482 LRRADEALYRAKSGGRNRV 500


>gi|76818246|ref|YP_336235.1| GGDEF domain-containing protein [Burkholderia pseudomallei 1710b]
 gi|76582719|gb|ABA52193.1| GGDEF domain protein [Burkholderia pseudomallei 1710b]
          Length = 528

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 11/204 (5%)

Query: 64  ILVENLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  + L ++++   I+++ G  +    L+    +  R+ +L+R D L+GL N  AF  +L
Sbjct: 320 IRAQRLGVLMLVFGIAIVGGTALLARELRWRRHAEMRLQRLARTDALTGLGNRRAFDENL 379

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGR 174
                        LS++F DID FK  ND++GH  GD V+  +   L   V      V R
Sbjct: 380 RSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAGDDVLREVGGCLAVNVRRAADDVAR 439

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEP 232
            GGEEF      +  + AA +A  +R+ + +  I     P   +T+S G+          
Sbjct: 440 YGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEHVRSPYARVTVSIGLVTSHEHIAHS 499

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
            +T++  AD ALY AK +GRNRV 
Sbjct: 500 DATLVKMADAALYQAKSTGRNRVC 523


>gi|148358439|ref|YP_001249646.1| sensor histidine kinase [Legionella pneumophila str. Corby]
 gi|148280212|gb|ABQ54300.1| sensor histidine kinase [Legionella pneumophila str. Corby]
          Length = 714

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 63/221 (28%), Positives = 89/221 (40%), Gaps = 14/221 (6%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI----SQLSRIDC 108
           +     YGL Y+ V    L +      LL+   +   L  L ++  R+       S  D 
Sbjct: 494 MAQNDIYGLLYLEVNLKQLPLFDENQRLLITAFAE--LTALALANVRLGESLRYQSIRDP 551

Query: 109 LSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GL N                      +I+  D+D+FK+IND FGH  GD V+  +   
Sbjct: 552 LTGLYNRRYLEDFLFKQLHQAERTKASFAILMLDLDHFKKINDTFGHEAGDFVLKEIGQI 611

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L           R GGEEF           A   A++LR  I   Q+   +     +T S
Sbjct: 612 LNNDIRLGDVATRYGGEEFVLLLFDVDANAAKTRADNLRSAISKLQVKYGAQYVGQVTAS 671

Query: 222 AGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            GI+           +I  AD+ALY AK  GRN V+ FS+I
Sbjct: 672 IGISIYPDDAKSPDELIEAADKALYQAKNKGRNMVLLFSEI 712


>gi|222056656|ref|YP_002539018.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. FRC-32]
 gi|221565945|gb|ACM21917.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. FRC-32]
          Length = 845

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 11/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             + E     + I   +  D L+GL N   F+  L         YNE  +++F D+D FK
Sbjct: 406 RDVTESKKMEDEIRYQATHDILTGLANRMLFMDHLALSISQGHRYNEIQAVMFLDLDRFK 465

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND+ GH  GDK++  +S +L         V R+GG+E+       +  ++A  +AN +
Sbjct: 466 SINDSLGHAAGDKLLQLISGRLKECVRETDTVARIGGDEYNILITQMAHPEDATAIANKI 525

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +  ++     G  +H+TIS GI+      E   T++  AD ALY AK+ GRN    +
Sbjct: 526 LSSM--NKPFAIDGHQLHVTISIGISLYPTDGEDAETLLKNADIALYHAKEQGRNNYQFY 583

Query: 259 SDIEN 263
           +   N
Sbjct: 584 NPALN 588


>gi|157963935|ref|YP_001503969.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157848935|gb|ABV89434.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
          Length = 485

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 60/168 (35%), Positives = 87/168 (51%), Gaps = 8/168 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
             ++ +++  D L+G  N  AF              +  +S++  DID+FK++ND  GH 
Sbjct: 317 QRKLERMASTDKLTGAANRQAFEDYFAKSLANSILESSPMSVLLLDIDHFKRVNDCHGHN 376

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD VI  LS  L         + R GGEEF     G S  + + +A  +RK++E   + 
Sbjct: 377 IGDLVIQTLSHLLKGQLRNDDLLCRWGGEEFLILLPGCSLSQGSDIAEKIRKLVEARLVT 436

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I +G  I+ITIS G+AE    E    +I R D ALY AK+ GRNRVV 
Sbjct: 437 I-NGCEINITISCGVAECRTSEKAEELINRVDIALYQAKEQGRNRVVM 483


>gi|330987546|gb|EGH85649.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 1250

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 15/192 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + E   S +RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 799 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQAWVVLMFLDLDRFK 858

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-----L 195
            IND+ GH  GD+++  ++ +L+    +   V R+GG+EF       + +EAA+     +
Sbjct: 859 PINDSLGHAAGDRMLQEMATRLLACVSSDDTVARMGGDEFTLLLQPDTSREAALTRAIHV 918

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  +   +      +  G    +T S GIA      + +S ++  AD A+Y AK+ G+N 
Sbjct: 919 AERILTSL--VTPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNN 976

Query: 255 VVCFSDIENNTC 266
              +    N T 
Sbjct: 977 FQFYQADMNATA 988


>gi|298485896|ref|ZP_07003972.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298159585|gb|EFI00630.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 425

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 59/183 (32%), Positives = 92/183 (50%), Gaps = 12/183 (6%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           +  Y+S    +        ++ +++  D L+GL N  A   +L           +  S++
Sbjct: 237 ITHYVSISQDVTTRLGREQKLLEIAHSDPLTGLNNRRAAEHTLERLIDTARISGKPFSLI 296

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK +ND +GHP GD+V+  ++  L           R GGEEF      SS   A
Sbjct: 297 IGDIDHFKSVNDRYGHPAGDRVLTSVAVILKQRIRLQDVAARWGGEEFLILVPDSSLDHA 356

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           A LA+ +R+ +E   I      +  +TIS G+A+    E  +++I RAD+ALY AK+ GR
Sbjct: 357 AELADRIREGVEGLLIP----NTGSVTISLGVAQLSPGETAASLIQRADKALYQAKRLGR 412

Query: 253 NRV 255
           NRV
Sbjct: 413 NRV 415


>gi|86749533|ref|YP_486029.1| response regulator PleD [Rhodopseudomonas palustris HaA2]
 gi|86572561|gb|ABD07118.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris HaA2]
          Length = 457

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 80/165 (48%), Gaps = 9/165 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N     S L        S  + L+++  DID+FK IND +GH  GD V
Sbjct: 290 EMAITDGLTGLHNRRYMESHLATLAEQAGSRGKPLALMILDIDFFKAINDTYGHDAGDDV 349

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG- 213
           +   + ++           R GGEEF      +  Q A ++A  LR+ I      I  G 
Sbjct: 350 LREFAVRIKKSIRGIDLACRYGGEEFVIVMPETDLQVAQMVAERLRRAIAGEPFAIEKGT 409

Query: 214 PSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
             I +TIS G++      E +  ++ RAD ALY AK  GRNRVV 
Sbjct: 410 KRIAVTISIGLSTLERKGEAVRDLLKRADTALYRAKHDGRNRVVA 454


>gi|27379458|ref|NP_770987.1| hypothetical protein bll4347 [Bradyrhizobium japonicum USDA 110]
 gi|27352610|dbj|BAC49612.1| bll4347 [Bradyrhizobium japonicum USDA 110]
          Length = 355

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 95/187 (50%), Gaps = 9/187 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           +S + +  L  S   I   S  D L+GL N   F   +G       +  E LS++ FDID
Sbjct: 159 LSRNEISNLQQSLEAIRAESLTDPLTGLGNRKYFDRMIGMAVQSALASGEPLSLLLFDID 218

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK  ND++GH  GD+V+  +   +           R GGEEFA     ++ ++A  +A+
Sbjct: 219 HFKSFNDSYGHLTGDQVLRLVGLSMKQTIKGQDITARYGGEEFAVLLPNTALRQALTVAD 278

Query: 198 DLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +R+ +   ++   S   I   +TIS G++     +    +I RAD  LY AK++GRNRV
Sbjct: 279 HIRRAVMAKELKKKSTGEILGRVTISVGVSMLKPGDDTDALIERADACLYAAKRNGRNRV 338

Query: 256 VCFSDIE 262
           +C +D E
Sbjct: 339 ICEADPE 345


>gi|296105787|ref|YP_003617487.1| PleD like two-component system [Legionella pneumophila 2300/99
           Alcoy]
 gi|295647688|gb|ADG23535.1| PleD like two-component system [Legionella pneumophila 2300/99
           Alcoy]
          Length = 662

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 63/221 (28%), Positives = 89/221 (40%), Gaps = 14/221 (6%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI----SQLSRIDC 108
           +     YGL Y+ V    L +      LL+   +   L  L ++  R+       S  D 
Sbjct: 442 MAQNDIYGLLYLEVNLKQLPLFDENQRLLITAFAE--LTALALANVRLGESLRYQSIRDP 499

Query: 109 LSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GL N                      +I+  D+D+FK+IND FGH  GD V+  +   
Sbjct: 500 LTGLYNRRYLEDFLFKQLHQAERTKASFAILMLDLDHFKKINDTFGHEAGDFVLKEIGQI 559

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L           R GGEEF           A   A++LR  I   Q+   +     +T S
Sbjct: 560 LNNDIRLGDVATRYGGEEFVLLLFDVDANAAKTRADNLRSAISKLQVKYGAQYVGQVTAS 619

Query: 222 AGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            GI+           +I  AD+ALY AK  GRN V+ FS+I
Sbjct: 620 IGISIYPDDAKSPDELIEAADKALYQAKNKGRNMVLLFSEI 660


>gi|241204117|ref|YP_002975213.1| response regulator PleD [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858007|gb|ACS55674.1| response regulator receiver modulated diguanylate cyclase
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 457

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 86/175 (49%), Gaps = 9/175 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
            L  S  +  +L+  D L+GL N     + L        +    LS++  DID FK +ND
Sbjct: 280 RLRASVKQTIELAVTDPLTGLYNRRYLDNHLNVLFNRSMARGRPLSVLITDIDRFKHVND 339

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+   S ++           R GGEEF      +S + AA +A  LR  IE
Sbjct: 340 TYGHDGGDEVLREFSSRVRSTIRGADLACRYGGEEFVVVMPDTSPEIAAAVAERLRAAIE 399

Query: 205 NSQINI-SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++   +  SG ++ +T S GIA R         ++ +AD ALY AK +GRNRVV 
Sbjct: 400 SAPFMLKHSGEALSVTASFGIASRIASVLTPGQLMKQADLALYEAKNTGRNRVVA 454


>gi|218780527|ref|YP_002431845.1| periplasmic/7TM domain sensor diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761911|gb|ACL04377.1| periplasmic/7TM domain sensor diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 589

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/259 (29%), Positives = 125/259 (48%), Gaps = 17/259 (6%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE 67
           +L+I     + L+ + P  +  Y + + +I + +      + L   GL P   +    V 
Sbjct: 336 WLAIITGIRRLLQGYVPARY--YVAGWLTISLGSF----TVSLQGFGLLPNNFVTTNAVA 389

Query: 68  NLSLVIISITISLLLGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAF------ 118
            ++  + ++ +SL LG    ++ +E   L +   R+ +LS  D L+GL N   F      
Sbjct: 390 -ITCTMETVLLSLALGDRINALQQEKRVLQVQEKRLMELSIRDELTGLFNKRWFSTKISS 448

Query: 119 -ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
            I +  + ++ LS++  DID+FK+ ND +GH +GD V+  L   + V         R GG
Sbjct: 449 EIENCRAVDQPLSLIILDIDHFKRFNDAYGHAMGDTVLNQLGKIISVNVRERDVPCRYGG 508

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EEF         ++AA +A  LR I         SG  I  TIS G AE    +  +++ 
Sbjct: 509 EEFTIILPLIDLKKAAQIAERLRGIFSRFVFRTGSGEKIKATISLGAAELSPTDDAASLF 568

Query: 238 YRADQALYVAKKSGRNRVV 256
            +ADQALY AK SGR+RV+
Sbjct: 569 EKADQALYRAKNSGRDRVI 587


>gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinobacterium sp. Marseille]
 gi|151282230|gb|ABR90640.1| diguanylate cyclase [Janthinobacterium sp. Marseille]
          Length = 605

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 117/246 (47%), Gaps = 11/246 (4%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIF--LFYIGLTPFYGLEYILVENLSLVIISITIS 79
           F P++F  + ++ F I    ++    +   + Y+ L      + I+ + L    +     
Sbjct: 361 FMPYSFASFHAVEFGILADVILLSLALADRIKYLRLQNEAAEKAIIEQKLQSNELLRQAK 420

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIV 132
             L  I      EL  + +   +LSR+D L+G  N   F          +   ++ LS++
Sbjct: 421 DDLERIVSERTAELRKARDEAERLSRVDALTGAFNRRYFNEVAALEFAKVRRLHQPLSVI 480

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            FDID FKQINDN+GH  GD+VI   +           FV R+GGEEFA    GS+ ++A
Sbjct: 481 SFDIDLFKQINDNYGHAAGDEVIKAAARVSRNAVREIDFVARIGGEEFAILLPGSTIEQA 540

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSG 251
           A  A  LR+++   Q++   G  +  T S G+A+     +    ++ RAD+ +Y AK  G
Sbjct: 541 AATAERLRELVIAEQVSY-QGKLLAFTASFGVAQLKDSDQSFEALLQRADEMMYRAKNLG 599

Query: 252 RNRVVC 257
           RNRV  
Sbjct: 600 RNRVAA 605


>gi|172064505|ref|YP_001812156.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
 gi|171997022|gb|ACB67940.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
          Length = 520

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 60/210 (28%), Positives = 94/210 (44%), Gaps = 15/210 (7%)

Query: 63  YILVENLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSA 117
           Y    + ++ I S    L LG++  S+L     ++   +   +  L+R D L+GL N   
Sbjct: 298 YAAWYDRAIPIGSAMAVLALGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRM 357

Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTP 169
              +L     +       LS++F D+D+FK+ ND  GH  GD  +A ++  +        
Sbjct: 358 LDVTLAREWRRAARSQHALSLLFVDVDHFKRYNDTQGHQAGDDALAAVARCIAGCLHRPA 417

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--R 227
            +  R GGEEF           A  +A  +R  I +  I   +G S  +T S G+     
Sbjct: 418 DYAARYGGEEFVVVLPNVDTNGAVTIAESIRTGILDLGIRHDTGVSGRLTASIGVTTCYP 477

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              + I   +  AD ALY AK+SGRN+VV 
Sbjct: 478 ERDDSIQAALKLADDALYRAKESGRNQVVV 507


>gi|70728811|ref|YP_258560.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5]
 gi|68343110|gb|AAY90716.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5]
          Length = 495

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 9/194 (4%)

Query: 72  VIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFI----SSLGSYN 126
           + +++ I L++  I   +L  +   Y R I   + +D L+ L N   F      +L    
Sbjct: 295 LYLNLLICLVITAIVLVLLSAVVRRYQRKIEAQATLDSLTRLPNRRGFDLLAAQALQEAW 354

Query: 127 E---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                L  V  D+D+FK++ND +GH  GD+V++  +  L         V R GGEEF   
Sbjct: 355 RDLTPLCAVLLDLDHFKRLNDTYGHLAGDQVLSGFARDLQGCLRQSDIVCRWGGEEFIVL 414

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              +    A  +A  +R + E  + +   G  + +T+S G+     ++ + +++ RAD A
Sbjct: 415 LKDTDSSVALGIAEKIRLLTEQQRYHY-EGQPLQLTVSIGLTSLQAQDTLHSLLSRADHA 473

Query: 244 LYVAKKSGRNRVVC 257
           +Y AK +GRNR   
Sbjct: 474 MYRAKHTGRNRTCV 487


>gi|195953730|ref|YP_002122020.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195933342|gb|ACG58042.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 901

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 64/186 (34%), Positives = 96/186 (51%), Gaps = 13/186 (6%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +L+L  +     + + I Y    +LS  D L+G+ N       L         YN  LS+
Sbjct: 721 TLILCILQDITEESMIIKY--FEELSIKDDLTGICNRRCLEDKLEEYLTLAKRYNRPLSV 778

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           + FDID+FK IND++GH +GDKV+  +++ ++        + R GGEEF   +  ++ ++
Sbjct: 779 IMFDIDFFKHINDSYGHDIGDKVLKTIANIVLSNIRATDILARYGGEEFVIISPETTLED 838

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A  LA  LRK IEN            IT S G+     ++   TI+ R D+ALY AK+ G
Sbjct: 839 AKALAEKLRKEIENFLFE----EGFSITCSFGVTSLNQEDTKETILKRVDEALYKAKREG 894

Query: 252 RNRVVC 257
           RNRVV 
Sbjct: 895 RNRVVA 900


>gi|32492876|gb|AAP85527.1| MorA [Pseudomonas putida]
          Length = 1282

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 15/192 (7%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            S + E   S  RI +L+  D L+ L N + F   L             + ++F D+D+FK
Sbjct: 831  SDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQAAERQKSWVVLMFLDLDHFK 890

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAIL 195
             IND+ GH  GD+++  ++ +L+        V R+GG+EF       S +E     A  +
Sbjct: 891  PINDSLGHAAGDRMLKDMATRLLACVDDDDTVARMGGDEFTLLLQHRSNRELACNRAIHV 950

Query: 196  ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            A  +   +   +  +  G    +T S GIA        +S ++  AD A+Y AK+ G+N 
Sbjct: 951  AEQILASL--VRPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKERGKNN 1008

Query: 255  VVCFSDIENNTC 266
               +    N + 
Sbjct: 1009 FQFYQADMNASA 1020


>gi|284042297|ref|YP_003392637.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
 gi|283946518|gb|ADB49262.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
          Length = 994

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 57/192 (29%), Positives = 88/192 (45%), Gaps = 11/192 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVF 133
            LG I    + E      ++  ++  D L+GLLN  +F   L  +  ++       + + 
Sbjct: 544 FLGQI--QDVSERVRYEAQLQHMADHDPLTGLLNRRSFERELNQHIHRVERYGAEGAALV 601

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID FK IND  GH VGD++I  ++  L         + RLGG+EFA       +QEA 
Sbjct: 602 LDIDRFKHINDTLGHNVGDELIVKVAQTLRSRLRDSDVLARLGGDEFAVLLPKGGQQEAE 661

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSG 251
            +A  +   +    +  ++G    IT S GIA            ++  AD A+Y AK++G
Sbjct: 662 AVAESILASVRAQSVLTTAGRRRPITTSVGIALFGETGGLSAEDVLVNADLAMYDAKEAG 721

Query: 252 RNRVVCFSDIEN 263
           R+R   FS  E 
Sbjct: 722 RDRAATFSSQER 733


>gi|146342000|ref|YP_001207048.1| signaling protein [Bradyrhizobium sp. ORS278]
 gi|146194806|emb|CAL78831.1| putative signaling protein containing multidomains (CHASE/GGDE/EAL)
           [Bradyrhizobium sp. ORS278]
          Length = 837

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 55/214 (25%), Positives = 103/214 (48%), Gaps = 12/214 (5%)

Query: 60  GLEYILVENLSLVIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           GL       L+L    +  ++ L     +S    ++L ++  R+ +L++ D L+GL N +
Sbjct: 326 GLMASHNRALALYAAGMATTIFLAVYLALSSRNAQQLALANRRVLELAQTDALTGLANRA 385

Query: 117 AFISSLGSYNE----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
            F+  +   N+    + ++   D+D FK +ND+ GH  GD+++  ++ +L         +
Sbjct: 386 FFLEEMERINDDKNGRFTVFLLDLDRFKNVNDSLGHGAGDELLMQVAQRLRSQLRDEDVL 445

Query: 173 GRLGGEEFAAAALGSSEQ--EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-H 229
            RLGG+EFA    G  +Q   A  LA  + ++I   +     G  + I  S GI+    H
Sbjct: 446 ARLGGDEFAVIQAGFDDQRTAAIELAQRITRLIA--EPFQIGGQRVEIGTSIGISLAPQH 503

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                 ++ +AD ALY +K +GR+    + D+ +
Sbjct: 504 GRDQEHLLKKADLALYRSKSAGRSCYTLYDDVMS 537


>gi|187477737|ref|YP_785761.1| signaling protein [Bordetella avium 197N]
 gi|115422323|emb|CAJ48847.1| putative signaling protein [Bordetella avium 197N]
          Length = 521

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 88/174 (50%), Gaps = 8/174 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQIN 143
            ++ +++   +N++ Q S  D L+GLLN       L     Y   +S++  DID+FK IN
Sbjct: 345 ATVSRKIGTKFNQLRQDSLTDALTGLLNRRGLDEILQSEPRYGRAMSVLAVDIDHFKAIN 404

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD VI  ++  L         +GRLGGEEF      +   +A   A  +R  +
Sbjct: 405 DELGHAAGDAVIRGIAALLRSRARASDILGRLGGEEFVVLLPNTDRAQALQAAERIRAAV 464

Query: 204 ENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
           E  Q    + P    T+S G+A   H    ++ ++ RAD+ALY AK+ GRNRV 
Sbjct: 465 ETFQ----AVPGGACTVSIGVAVYPHEGASLTAVLERADEALYEAKRGGRNRVC 514


>gi|283835033|ref|ZP_06354774.1| HmsT protein [Citrobacter youngae ATCC 29220]
 gi|291069322|gb|EFE07431.1| HmsT protein [Citrobacter youngae ATCC 29220]
          Length = 358

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 70/275 (25%), Positives = 119/275 (43%), Gaps = 22/275 (8%)

Query: 8   FLSIWLCHEKNLESFSPHT--FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG----- 60
           F  +W  H     S   H   + +  ++   +FI ++ F  NI  F +   P  G     
Sbjct: 78  FGVLWAFHIFQKYSTLGHNDYYFLLIALLSVLFIGSIAFANNIIAFTLHSLPSVGVCLWL 137

Query: 61  --------LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112
                   + Y +   ++ + I   I       +  ++ +L      ++ LS +D L+GL
Sbjct: 138 NGSEHSLRIFYFMALPMAGIAIQHVIQKRYDGFAQQLMYKLLEERETLNGLSMLDPLTGL 197

Query: 113 LNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N       L +     N K  ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 198 YNRRGLQHRLDTLLALSNSKHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDSVRS 257

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF         Q+A   A  +R+ + + +I      S+  ++T+S GIA 
Sbjct: 258 RDVVARFGGEEFMVLLTAIDPQQAQAAAERIRQKVYDLKIPHMFNESVATNVTVSIGIAP 317

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
               + I   I RAD+ALY AK  GRN  +   ++
Sbjct: 318 LVE-QDIEAAIARADKALYEAKNLGRNNTLVSEEL 351


>gi|296133437|ref|YP_003640684.1| diguanylate cyclase [Thermincola sp. JR]
 gi|296032015|gb|ADG82783.1| diguanylate cyclase [Thermincola potens JR]
          Length = 364

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 72/248 (29%), Positives = 109/248 (43%), Gaps = 19/248 (7%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITI---SLLLGYIS 86
           YF + F I I  +        FY        L   L+  ++  I++  I           
Sbjct: 112 YFGLVFVISIIYLAVSLTGAAFYRTGIDKVQLATQLIYFIAFGILASFILQREYEQQQEK 171

Query: 87  GSILKELFISYNRI-------SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
             ++KEL  +Y ++        +++  D L+ L N+  F+  L         YN+ LS++
Sbjct: 172 EELIKELQAAYRQLSAYNAQVEEMAIKDPLTELYNYRYFVGRLREEIQWAQKYNKPLSLI 231

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DIDYFKQ ND +GHP GD  +   +            V R GGEEF      +S  EA
Sbjct: 232 LLDIDYFKQFNDTYGHPAGDAALKKAAKIFQENIRDRDIVARYGGEEFFVLLPDTSVDEA 291

Query: 193 AILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250
            + A  +RK IE + I +     +  IT+SAG+A        +  ++   DQALY AKK 
Sbjct: 292 YLCAERIRKAIEKTDIKVEEKKATAKITVSAGVAALSTGTRTVKDLLQVVDQALYQAKKL 351

Query: 251 GRNRVVCF 258
           GRN+   +
Sbjct: 352 GRNKTQIY 359


>gi|257482140|ref|ZP_05636181.1| sensory box protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 1250

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 15/192 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + E   S +RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 799 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQAWVVLMFLDLDRFK 858

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-----L 195
            IND+ GH  GD+++  ++ +L+    +   V R+GG+EF       + +EAA+     +
Sbjct: 859 PINDSLGHAAGDRMLQEMATRLLACVSSDDTVARMGGDEFTLLLQPDTSREAALTRAIHV 918

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  +   +      +  G    +T S GIA      + +S ++  AD A+Y AK+ G+N 
Sbjct: 919 AERILTSL--VTPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNN 976

Query: 255 VVCFSDIENNTC 266
              +    N T 
Sbjct: 977 FQFYQADMNATA 988


>gi|17548619|ref|NP_521959.1| putative transmembrane protein [Ralstonia solanacearum GMI1000]
 gi|17430867|emb|CAD17549.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum GMI1000]
          Length = 488

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 101/234 (43%), Gaps = 21/234 (8%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           + +F+A      +I+  +     + G+         LV++   ++L + Y+    L+   
Sbjct: 263 YPLFVAVGTATEDIYANWKARAWWIGM---------LVVLFNVVTLAMAYLFAQHLERRI 313

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
               R ++L+  D L+GL N  A    L           + LS++  D+D+FK  ND++G
Sbjct: 314 EEQRRHAELAATDALTGLANRRALDERLDAEWRRAARERQPLSVLMIDVDHFKAYNDHYG 373

Query: 148 HPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           HP GD  +  ++  +            R GGEEF     GS    A ++A  +R+ I   
Sbjct: 374 HPDGDAALQAVARCIQANLRRPGDLAARYGGEEFCVVLPGSDLDSANVVAETIRRAILVL 433

Query: 207 QINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVV 256
            I  +   S  +T+S G A            +T+   AD  LY AK SGRNR +
Sbjct: 434 NIPHARSASTALTVSIGAASGTPASSGEPRAATLTKAADAQLYRAKTSGRNRTM 487


>gi|299067851|emb|CBJ39062.1| conserved protein of unknown function, eal-ggdef domains [Ralstonia
           solanacearum CMR15]
          Length = 903

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 11/175 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNF 146
             +  ++  L++ D L+GL N + F+  + +          + +++F D+D FK++ND  
Sbjct: 463 RAAEQQLKFLAQRDALTGLYNRAYFLQRMQAVLDEAVTDGRQAAVLFLDLDGFKKVNDTA 522

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIEN 205
           GH  GD ++  ++ +L         + RLGG+EF        S  EA  LA  +   I  
Sbjct: 523 GHEAGDHLLRIVAQRLSACVRQTDTLARLGGDEFVVLLDQVRSLAEAERLARRIIAAIA- 581

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            Q   + G   ++  S GIA    H +  +T++  AD A+Y AK++GRN+   F+
Sbjct: 582 -QPFSTGGTEYYLGASIGIAVHPEHGQDAATLLRCADAAMYNAKQNGRNQHRVFT 635


>gi|296274238|ref|YP_003656869.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
 gi|296098412|gb|ADG94362.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
          Length = 348

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 79/238 (33%), Positives = 114/238 (47%), Gaps = 13/238 (5%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISI-TISLLLGYIS 86
           ++  SIF SIF    +   N + F      +  + Y+L       I++  +I+  L  I 
Sbjct: 115 IVLLSIFISIFT-LFLLPYNKYSFLFFCVAYLMVSYLLYFYRYYEIMTFKSINEELENIV 173

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
               KEL IS  ++ +L+  D L+ LLN           I+    +N    ++  DID+F
Sbjct: 174 KERTKELEISNKKLEKLASTDVLTKLLNRGKLNDFLESEINRASRFNHIFGVIIMDIDHF 233

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND +GH VGDKV+   +  L         VGR GGEEF      +  +    LA +L
Sbjct: 234 KSTNDIYGHNVGDKVLEEFATILKTKTRVTDIVGRWGGEEFVIICPQTDIEGIKKLAEEL 293

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R IIEN+  +I        T S GI   C  + I ++I RAD+ALY AK+ GRN+VV 
Sbjct: 294 RYIIENNSFSIVGNK----TASFGITLYCEGDTIKSLISRADKALYRAKEEGRNKVVV 347


>gi|206559409|ref|YP_002230170.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
 gi|206561189|ref|YP_002231954.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
 gi|198035447|emb|CAR51324.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
 gi|198037231|emb|CAR53152.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
          Length = 492

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 11/212 (5%)

Query: 58  FYGLEYILVENLSLVIISITISLL-LGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
            Y       E + L++ +   + + L    G  L+    + + +  L+R D L+GL N  
Sbjct: 277 IYAAWRRRAETIGLLVATFGAAFIALSVFLGVQLRRRMRAESELELLARTDGLTGLNNRR 336

Query: 117 AFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGT 168
           +F   L     +        S++F D+D FK  ND +GH  GD  +A ++  +   +   
Sbjct: 337 SFGEVLDREWRRARRAHSVFSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRP 396

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
                R GGEEF      +    AA  A  +R  I    +  +      +T S G+A   
Sbjct: 397 TDTAARYGGEEFVVLLPDTPPTGAAQTAERIRAAINELALEHAGSEYGRVTASIGLASWT 456

Query: 229 HKEPIS--TIIYRADQALYVAKKSGRNRVVCF 258
             +      +I  AD+ALY AK +GRN+V  F
Sbjct: 457 PDQDGDPGAVIKAADEALYYAKAAGRNKVSAF 488


>gi|70729416|ref|YP_259154.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5]
 gi|68343715|gb|AAY91321.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5]
          Length = 523

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 20/220 (9%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYI-------SGSILKELFISYNRISQLSRID 107
           L  +Y   Y     ++LV++ +    L G++       +  I  +L  +   +  ++  D
Sbjct: 292 LKGWYASAYQSTAIVALVLLGVG---LFGWVFVQQVRNNERIEADLREAQEALEVIATHD 348

Query: 108 CLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+GL N   F  +L             LS+V  DIDYFK+ ND +GH  GD  +  ++ 
Sbjct: 349 SLTGLANRRLFERALTVEFGRGARQRSPLSLVMVDIDYFKRYNDTYGHVAGDHCLTEVAQ 408

Query: 161 QLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            L            R GGEEFA     +    A  +A  +R+ +    I  S  P   +T
Sbjct: 409 ALKGCCQRKADLAVRYGGEEFAVLLPDTDIHGALAMAEQIRRSVMQRNIAHSGSPVGCVT 468

Query: 220 ISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G        ++ I   I RAD ALY AK +GRNR + 
Sbjct: 469 VSLGCYAFVPTGRDSIEMFIERADAALYQAKATGRNRAMA 508


>gi|256823241|ref|YP_003147204.1| diguanylate cyclase [Kangiella koreensis DSM 16069]
 gi|256796780|gb|ACV27436.1| diguanylate cyclase [Kangiella koreensis DSM 16069]
          Length = 469

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 83/284 (29%), Positives = 128/284 (45%), Gaps = 31/284 (10%)

Query: 3   RSLKDFLSI--------WLCHEKNLESFSPHTF---MIYFSIF-FSIFIATVI----FIA 46
           R L ++LSI        W+  + N+  + P  +   MI+F++   S  I TV     ++A
Sbjct: 179 RLLTEYLSISLFLGAVLWMLVQ-NIRGYMPLQYGIAMIWFALSCLSFSIGTVWDHQWWLA 237

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI-----SGSILKELFISYNRIS 101
           +I      L   +G+    +   S   I     L    I     S   L EL     ++ 
Sbjct: 238 HIIFASGFLLLSFGVVQAFLTTGSFKTIYSQTELFQQIIREKKKSERALIELKAVNQKLE 297

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+ + N   F+        +       L ++  D D+FK+IND +GH  GDKV
Sbjct: 298 ELAATDSLTRVANRREFMKRSEEEMSRSSRNSTDLCLMVIDFDHFKEINDQYGHQAGDKV 357

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +         V      +GR+GGEEFA     ++ + A  +A  LR+ IE   I +    
Sbjct: 358 LKDFVKLAKEVMRPSDLLGRIGGEEFALLLPETNIRSAVKVAERLRQHIEEESI-VIGSK 416

Query: 215 SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
            I +TIS G+AE   K + +   ++RAD+ LY AK  GRNRVV 
Sbjct: 417 RIKLTISIGVAEYQPKVDTVKKWLHRADEFLYQAKDKGRNRVVV 460


>gi|220927155|ref|YP_002502457.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium nodulans ORS 2060]
 gi|219951762|gb|ACL62154.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium nodulans ORS 2060]
          Length = 457

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 92/191 (48%), Gaps = 14/191 (7%)

Query: 81  LLGYISGSILKELFISYNRIS-----QLSRIDCLSGLLNHSAFISSLGS-------YNEK 128
           L+  I   + ++ F    R S     +L+  D L+GL N   F S L             
Sbjct: 264 LVARIRTQVRRKRFAHALRESVQASMELAVTDGLTGLHNRRYFDSHLAGLFREAVLRGRP 323

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           ++++  DID FK IND FGH  GD+V+   +D++         V R GGEE       + 
Sbjct: 324 IALLLLDIDRFKTINDGFGHDAGDEVLRQFADRIRAHTRGIDIVARFGGEEIVVVVPDAG 383

Query: 189 EQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAERCHKEP-ISTIIYRADQALYV 246
              A  +A  +R+ IE +   I  G  +I +T+S G+A R   +   + ++ RAD ALY 
Sbjct: 384 LDGAQQVAERIRERIEAAPFTIHGGTRTIDVTVSVGVAVRHPDDAGPADLLKRADVALYQ 443

Query: 247 AKKSGRNRVVC 257
           AK+ GRNRVV 
Sbjct: 444 AKQEGRNRVVA 454


>gi|148554237|ref|YP_001261819.1| diguanylate cyclase [Sphingomonas wittichii RW1]
 gi|148499427|gb|ABQ67681.1| diguanylate cyclase [Sphingomonas wittichii RW1]
          Length = 1004

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           +L  +  R+  L+  D L+G  N   F++       +       L +   D+D FK +ND
Sbjct: 827 DLRAANERLGHLALTDPLTGCANRRHFLALAEDQIGAARRGGRPLCLAILDLDEFKAVND 886

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GHP GD V+      L+         GR+GGEEFA     ++  +A + A+ LR+ I 
Sbjct: 887 RHGHPGGDAVLEMAGILLLDHLREGDAAGRIGGEEFAILMPNTAIADARLFADRLREAIA 946

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++I +  G SI +++S G+AE C  E    +  RAD  LY AK++GRNRV
Sbjct: 947 TARITV-DGLSIGVSVSMGVAELCDDEDFGRLYARADTGLYAAKQAGRNRV 996


>gi|300312606|ref|YP_003776698.1| EAL domain transmembrane protein [Herbaspirillum seropedicae SmR1]
 gi|300075391|gb|ADJ64790.1| EAL domain transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 695

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 13/224 (5%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYI---SGSILKELFISYNRISQLSRIDCLS 110
           G+ P +    I+V  L+ + I++  S+L   +   +  + + L  +   ++Q+   D L+
Sbjct: 213 GVAPGWLAVLIIVVTLAALTIALLTSVLDARLESRTAKLARSLAAANEELTQMVLHDQLT 272

Query: 111 GLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            L N +     L              +++F D+D FK IND+ GH VGD+++  ++ +L 
Sbjct: 273 RLPNRTLLEDRLNQAINKAAREQGHFALMFMDLDGFKAINDSLGHHVGDRLLVEVAQRLT 332

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   V RLGG+EF      ++ ++A  +A  L + +  +Q        + ++ S G
Sbjct: 333 SSSRANDTVARLGGDEFVILVDLNTPEDAMGVAEKLVEAV--NQPFKVDQHELRVSASVG 390

Query: 224 IAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           IA           ++  AD A+Y  K+SGRN    F    N   
Sbjct: 391 IAIYPEDGATRHDLVINADAAMYHTKRSGRNGYHFFEPSMNANA 434


>gi|237654500|ref|YP_002890814.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Thauera sp. MZ1T]
 gi|237625747|gb|ACR02437.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Thauera sp. MZ1T]
          Length = 703

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 82/195 (42%), Gaps = 23/195 (11%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
             + E      RI  L+  D L+GL N  +F+  L     +       L+++F D+D FK
Sbjct: 237 RDITERKEYETRIHHLAYFDSLTGLANRRSFLERLEREIRRALQNKWRLAVLFLDLDRFK 296

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR------------LGGEEFAAAALGSS 188
            IND  GH  GD ++   +++L  +      V              LGG+EF       S
Sbjct: 297 SINDTLGHAAGDALLQQAAERLRAITRPGDIVAHDTDRMGTAEFARLGGDEFTVLLPTIS 356

Query: 189 E-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYV 246
              +A  +A  +R  I         G  + +T S GIA      E  +T+I  AD A+Y 
Sbjct: 357 RPDDALAIAERIRASI--CAPFAIEGQELCVTTSVGIAVFPDDGEDAATLIKHADIAMYD 414

Query: 247 AKKSGRNRVVCFSDI 261
           AK +GRN    ++  
Sbjct: 415 AKANGRNGCRYYNPA 429


>gi|217971643|ref|YP_002356394.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           baltica OS223]
 gi|217496778|gb|ACK44971.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           baltica OS223]
          Length = 628

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 92/183 (50%), Gaps = 11/183 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL     ++++ S ID L+G+ N SAF   L             ++++  DID FK I
Sbjct: 441 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLIAESRISRRQETPIALLMLDIDRFKLI 500

Query: 143 NDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD+ +  ++  L          V R GGEEFA     ++E  A  +A  +R 
Sbjct: 501 NDRFGHLAGDEALRTIAQTLQQHLKRPTDLVSRYGGEEFAIILPNTAEDGALQVAETIRD 560

Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +         +I +TIS G++     + +  + ++ +AD+ALY AK  GRN+V  FS
Sbjct: 561 AVASINFEWEV-VAIPLTISIGVSADIVTNDQHCTKLLEQADKALYQAKNGGRNQVSLFS 619

Query: 260 DIE 262
            ++
Sbjct: 620 SVQ 622


>gi|119472331|ref|ZP_01614470.1| sensory box protein [Alteromonadales bacterium TW-7]
 gi|119444954|gb|EAW26251.1| sensory box protein [Alteromonadales bacterium TW-7]
          Length = 670

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 64/264 (24%), Positives = 120/264 (45%), Gaps = 33/264 (12%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPF---------------YGLEYILVENLSL 71
           F + F I  ++    V  I ++ L    L+P                Y L    + N  +
Sbjct: 145 FYVKFIISLTLLSFAVSLIISLLLRRRFLSPILYLAQTANDITKSNDYSLRAEQLSNDEV 204

Query: 72  VIISITISLLLGYISGS----------ILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
             +++  + +L  I               +EL  + + + + +  D L+ L N   F   
Sbjct: 205 GELTVCFNDMLYTIEQREHALENQVKTRTQELESANSELHRYAYQDGLTDLPNRRYFYEK 264

Query: 122 LGS----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
           + S    +N   +++F D+D FK++ND+ GH  GD ++  ++++L         + RLGG
Sbjct: 265 IQSLINTHNTNFALIFIDLDGFKEVNDSLGHDYGDLLLHQVANRLKACICEQDIIARLGG 324

Query: 178 EEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPIST 235
           +EF       +  + AA +AN ++  +  + I +    ++++T S GI     H + +  
Sbjct: 325 DEFTLILQNVTDLERAAKVANSVQHAL-LTSIQVKK-ETVYVTASIGITLYPEHGKTVEE 382

Query: 236 IIYRADQALYVAKKSGRNRVVCFS 259
           ++ RADQA+Y++KK GRNR   FS
Sbjct: 383 LVKRADQAMYLSKKKGRNRYEFFS 406


>gi|89099973|ref|ZP_01172844.1| putative diguanylate cyclase (GGDEF) [Bacillus sp. NRRL B-14911]
 gi|89085365|gb|EAR64495.1| putative diguanylate cyclase (GGDEF) [Bacillus sp. NRRL B-14911]
          Length = 280

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 114/242 (47%), Gaps = 9/242 (3%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL 81
           + P   +I+F I  + + A       + +F  GL          +E+L+   ++    +L
Sbjct: 42  WVPAVILIFFLILRAKWGAVYSLFIFVIIFAFGLMNLPNASGDSLESLAQFYVAYLFYIL 101

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDY 138
           + Y++  + K LF     + +++  D L+G+ N       L  + +K    S++FFDID+
Sbjct: 102 VFYMALHLFK-LFSELESMKRVAYTDSLTGIANRLRIDGWLEEWIKKSEGFSVIFFDIDH 160

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND +GH  GD V+  L+  +          GR GGEEF      + E  A  LA  
Sbjct: 161 FKCVNDTYGHDAGDLVLKQLASLVRQPLTGAELFGRWGGEEFIILTPKTGES-AVNLAEK 219

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           LRK+I  S    +       T S G+A+    + + +++ RADQ LY +K  GRNRV   
Sbjct: 220 LRKVIMESSFPPAGNQ----TASFGVAQYKKGDTVDSLLSRADQGLYQSKHEGRNRVTFG 275

Query: 259 SD 260
            +
Sbjct: 276 DE 277


>gi|71907211|ref|YP_284798.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71846832|gb|AAZ46328.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 1093

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 11/184 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           E     +++  L+  D L+GL N +     LG         + K++I+F D+D FK IND
Sbjct: 655 ERRRIESKLRYLAHHDALTGLANRTLLQQRLGEAMDNAAQDDTKVAILFIDLDRFKTIND 714

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILANDLRKII 203
           + GH +GD ++  ++ +L     +   + RLGG+EF       ++E  A  LA+ +   +
Sbjct: 715 SLGHHIGDTLLKNVASRLTETLRSNDTIARLGGDEFMIILPLKANEALAGKLASKILDAL 774

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
                    G  + +T S GI    +    ++ ++  AD A+Y AK +GRN    F+   
Sbjct: 775 R--PPIRIDGHELFVTPSIGICFYPNDGVTVNALMRNADTAMYQAKANGRNTYCYFTAEM 832

Query: 263 NNTC 266
           N   
Sbjct: 833 NAAA 836


>gi|27367767|ref|NP_763294.1| putative diguanylate cyclase [Vibrio vulnificus CMCP6]
 gi|27359340|gb|AAO08284.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS domain [Vibrio vulnificus CMCP6]
          Length = 357

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 12/195 (6%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNE 127
           +  +  L  +++  + K   I  N++ +L+ ID L+G LN  AF+ +          Y+ 
Sbjct: 164 ARVLETLANWVAAQVHKHQQI--NKMIELAHIDPLTGALNRRAFVEATYFINDKPRHYDH 221

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
             +++  D+D FK+IND FGHP GDKV+  ++  L     +   + R GGEEFA      
Sbjct: 222 HTALLMIDLDKFKEINDQFGHPAGDKVLMQIAATLKKQIRSDDLLARFGGEEFAILLHHV 281

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYV 246
           + +EA  LA  LR  +E   I       I  T+S GIA      +    ++  AD ALYV
Sbjct: 282 NAEEAMTLAETLRVTVEQLTIEHHQ-HRIQCTVSIGIALPSSPNQGFEELMQLADNALYV 340

Query: 247 AKKSGRNRVVCFSDI 261
           AK+SGRN+++  SD+
Sbjct: 341 AKRSGRNQIIL-SDM 354


>gi|54294112|ref|YP_126527.1| hypothetical protein lpl1176 [Legionella pneumophila str. Lens]
 gi|53753944|emb|CAH15415.1| hypothetical protein lpl1176 [Legionella pneumophila str. Lens]
          Length = 768

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 117/285 (41%), Gaps = 30/285 (10%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63
            + D         +  E  S   +++   I +    A+   I +  +FY+ LT      Y
Sbjct: 205 QIPDMWLYDSYVSRPFELISVFIYLMLMIIVYPKIYASYPTILSDSVFYMSLTQVVLAIY 264

Query: 64  ILVENLSLVIISITISLLLGYISGSI-------------------LKELFISYNRISQLS 104
           I++ + +    +  I+  L  +   I                    K L I    +  ++
Sbjct: 265 IMLLSTTPYDSAFNIAYFLKVVVYFIPCTCFVINYVFSYSAVLEGQKNLKIKQEELKYMA 324

Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
             D L+ L N   F   L          N  L+++  D+D FK IND FGH  GD+++  
Sbjct: 325 SHDPLTNLFNRREFEDLLDKSIANAQRNNSSLALLLIDLDNFKAINDTFGHFHGDELLKQ 384

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSI 216
            +++LV++      + R+GG+EF   +L   S   A  LA  +    E +     +G  I
Sbjct: 385 FANRLVLLVRKGDLLSRVGGDEFTLISLNIESPSSARHLAERILN--ELNSPYTINGKLI 442

Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +T+S GI+           ++ +AD A+Y AK SG+N    +++
Sbjct: 443 TVTVSIGISIFPDDGNTTEDLLRKADLAMYKAKNSGKNTYQFYTE 487


>gi|119945575|ref|YP_943255.1| diguanylate cyclase [Psychromonas ingrahamii 37]
 gi|119864179|gb|ABM03656.1| diguanylate cyclase [Psychromonas ingrahamii 37]
          Length = 477

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 62/193 (32%), Positives = 104/193 (53%), Gaps = 11/193 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------S 124
           ++ S+  ++L+ ++   ILK +   Y  +  L++ D L+ L N  AF   L         
Sbjct: 288 LLCSLLGTILIAFL---ILKTVNKYYKEMEHLAKYDALTNLKNRRAFNEELEHSLLLCKR 344

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
               LS+ FFD+D FK +ND FGH  GDKV+ +++D L         +GR GGEEF  A 
Sbjct: 345 RASHLSLTFFDLDDFKSVNDTFGHQTGDKVLQYVADILKDDIRQTDIIGRWGGEEFIVAF 404

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
           + +  ++A  +   +R  IE     +S   ++ +T S G+     ++ + +++ RADQAL
Sbjct: 405 IDTELEDAKFITEKIRAHIEKDSF-LSQLKNMKVTASFGLTTITTQDTLDSLLERADQAL 463

Query: 245 YVAKKSGRNRVVC 257
           Y AK++G+N+V C
Sbjct: 464 YKAKENGKNQVFC 476


>gi|330957612|gb|EGH57872.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 358

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 115/231 (49%), Gaps = 12/231 (5%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
              + +    L P       + +  + + + +   + +G++S  +  +L+   N + +LS
Sbjct: 125 ALGVLIGLALLNPVVDPHSNMTQIYACLPVLVVYPVFVGWLSHQVTLKLWEHRNILRKLS 184

Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           R D L+GLLNH A+   L        S + +  I   DID+FK IND +GH VGD V+  
Sbjct: 185 RTDSLTGLLNHGAWKDLLDLEFAKSRSLHRQCVIALIDIDHFKIINDTYGHLVGDTVLQN 244

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +S+ LV        +GR GG+EF      +S ++A  +   LR+ I+  +   +    + 
Sbjct: 245 ISEALVENLRDTDLIGRCGGDEFCVILPDTSSRQAEEILERLRQAID--EFTYALHCELR 302

Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI--ENNT 265
           +++S GIA    +    ST ++ AD+ALY AK +GRNRVV   D   E  T
Sbjct: 303 VSLSIGIAVYTPELTDASTWLHEADKALYFAKSTGRNRVVNAQDAPSERQT 353


>gi|290508759|ref|ZP_06548130.1| diguanylate cyclase [Klebsiella sp. 1_1_55]
 gi|289778153|gb|EFD86150.1| diguanylate cyclase [Klebsiella sp. 1_1_55]
          Length = 560

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 53/203 (26%), Positives = 103/203 (50%), Gaps = 10/203 (4%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+ +  T+ LLL + +   +++ + +    +   +  D L+ LLN  A          
Sbjct: 358 LTLMWVLFTLMLLLSWLVIRRMVRNMSVLQTSLEWQAWHDALTRLLNRGALFEQAMAVAS 417

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   LS++  D+D+FK+IND +GH  GD+V++ ++  L         +GR+GGEEF
Sbjct: 418 ACQRSGRPLSVIQLDLDHFKRINDRYGHQAGDRVLSTVASTLASTVREGDLLGRVGGEEF 477

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIY 238
                 ++ Q+A  +A  LR  I+  ++ + +  ++ ++ S G++    +       +  
Sbjct: 478 CVVLPNTTLQDAVAVAERLRLRIQGREVFLHNNVTLRVSASLGVSTSEEQGEYQFEALQS 537

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
            AD+ LY+AK++GRN+V   S+ 
Sbjct: 538 VADRRLYLAKQNGRNQVCFRSEA 560


>gi|289675902|ref|ZP_06496792.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 826

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 15/192 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + E   S +RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 437 SDISERRASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQAWVVLMFLDLDRFK 496

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-----L 195
            IND+ GH  GD+++  ++ +L+        V R+GG+EF         +EAA+     +
Sbjct: 497 PINDSLGHAAGDRMLQEMATRLLACVSEDDTVARMGGDEFTLLLEPDETREAALNRAIHV 556

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  +   +      +  G    +T S GIA      + +S ++  AD A+Y AK+ G+N 
Sbjct: 557 AERILTSL--ITPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNN 614

Query: 255 VVCFSDIENNTC 266
              +    N T 
Sbjct: 615 FQFYQADMNATA 626


>gi|119900138|ref|YP_935351.1| GGDEF/EAL/PAS/PAC-domain-containing protein [Azoarcus sp. BH72]
 gi|119672551|emb|CAL96465.1| GGDEF/EAL/PAS/PAC-domain containing protein [Azoarcus sp. BH72]
          Length = 689

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 83/185 (44%), Gaps = 11/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            L E+  + +RI QL+  D L+GL N S      G             +++F D+D FK 
Sbjct: 242 DLSEIKAAEDRIRQLAYFDPLTGLPNRSLLEDRAGQVLVRAGRDRRAATLMFIDLDRFKT 301

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND+ GH +GD+++     +L         V RLGG+EF   A  +  + A  LA  + +
Sbjct: 302 VNDSLGHLMGDQLLRLAGQRLRDSVRLSDTVARLGGDEFIVLAPDTGAEGAVRLAEKILE 361

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +             + I+ S GIA           ++  AD A+Y AK+ GRN    FS 
Sbjct: 362 VFAA--PFDLDDRELTISPSIGIARYPDDGKDFPALLQSADIAMYQAKREGRNGFRMFS- 418

Query: 261 IENNT 265
           IE N 
Sbjct: 419 IEMNA 423


>gi|289207287|ref|YP_003459353.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
 gi|288942918|gb|ADC70617.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
          Length = 446

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 94/178 (52%), Gaps = 10/178 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL  S   + QL+  D L+GL N  AF  ++         + +  S++  D+D FKQIND
Sbjct: 252 ELEASNMELEQLTLTDPLTGLGNRRAFQEAIEKDVALFRRHGDPASLLILDLDAFKQIND 311

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+++   ++ L     T   V RLGGEEFA     +  ++A  +A  LR+ + 
Sbjct: 312 THGHEGGDRILRRFAELLQDRVRTTDLVCRLGGEEFAVFLRRAEPEDALAIAEALREAVA 371

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFS 259
             ++ +  G    IT+S G+A    ++ ++T   +   ADQA+Y +K+ GRNRV  ++
Sbjct: 372 AMEVALDDGARASITVSIGVAWLSLEDDLTTTRALCRAADQAMYASKRRGRNRVTDYT 429


>gi|192362294|ref|YP_001983295.1| YaiC/YhcK/ArdA family protein [Cellvibrio japonicus Ueda107]
 gi|190688459|gb|ACE86137.1| YaiC/YhcK/ArdA family protein [Cellvibrio japonicus Ueda107]
          Length = 330

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 67/249 (26%), Positives = 105/249 (42%), Gaps = 14/249 (5%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIIS----ITISLLLGY 84
           I    F       V  +A + +  + +  F   E+ L  +  ++  +    +   L +G 
Sbjct: 81  IAAGGFRLFLRGVVTSLAGLLMGLLVVRSFLHWEFNLSSDPVMIYAALPMLVIYPLAIGS 140

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           I+     +L      +  LSR D L+GL N S +   +           + L +V  D+D
Sbjct: 141 ITYRFAMQLHSQKELLKHLSRTDGLTGLFNRSYWEERVLALINQTQRSGQPLCLVLLDVD 200

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK IND +GH  GD+++  ++  L V       +GR GGEEFA A   +S   A   A 
Sbjct: 201 HFKMINDTYGHGRGDQILQQIAQCLQVNLREHELLGRYGGEEFALALANTSLPAALATAE 260

Query: 198 DLRKIIENSQINISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            LR+ +          P +     +IS G+A              ADQALY AK+ GRNR
Sbjct: 261 RLRQAVATMNFADEHEPRLAPLCCSISLGLAPWQPGISFLEWQRAADQALYQAKREGRNR 320

Query: 255 VVCFSDIEN 263
              +   E+
Sbjct: 321 SCIYQPQES 329


>gi|94270720|ref|ZP_01291807.1| PAS:GGDEF:EAL [delta proteobacterium MLMS-1]
 gi|93450693|gb|EAT01779.1| PAS:GGDEF:EAL [delta proteobacterium MLMS-1]
          Length = 941

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 16/190 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           + + +       I +L+  D L+ L N   F   L           +  +++F D+D FK
Sbjct: 485 TDITDKKNREQEIHRLAFYDPLTRLPNRRLFFDRLEQAFSASARSGQHGAVLFLDLDNFK 544

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ------EAAI 194
            +ND  GH VGD ++   +++L         + R GG+EF       S +      +A  
Sbjct: 545 TLNDTRGHDVGDLLLTMAAERLQEAVRANDTISRQGGDEFMVLLNNLSPERHAAISQAGR 604

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRN 253
           +A  +R  ++  Q     G   HI +S G++    H  P   +  RAD A+Y AK +GRN
Sbjct: 605 VAEKIRAALD--QPFDLDGYEHHIGVSIGLSLFLGHDTPADELFKRADAAMYQAKHAGRN 662

Query: 254 RVVCFSDIEN 263
           +V  F     
Sbjct: 663 QVRFFDPEMQ 672


>gi|325982844|ref|YP_004295246.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas sp. AL212]
 gi|325532363|gb|ADZ27084.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas sp. AL212]
          Length = 576

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + E   +  RI +++  D L+GL N +     +           ++++++F D+D FK 
Sbjct: 136 DITERHRAEQRILEMATYDILTGLPNRALLKDRIERALEHGNRNRQRVALLFIDLDNFKV 195

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           IND+ GH VGDK++  ++ + V +      V R GG+EF        S  +A  +A  + 
Sbjct: 196 INDSLGHDVGDKLLQAVAARFVSIVRGEDTVARQGGDEFIVLLSNLESAFDAEAVAQKIL 255

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++     +  G  +HI+ S GI+      E I T++  +D A+Y AKK+GRN    F 
Sbjct: 256 NALQLH--FLIDGKELHISGSIGISLFPDDGEDIWTLLRNSDIAMYHAKKNGRNNCEFFK 313

Query: 260 DIENNTC 266
              N   
Sbjct: 314 PEMNRQA 320


>gi|187921653|ref|YP_001890685.1| PAS/PAC sensor-containing diguanylate cyclase [Burkholderia
           phytofirmans PsJN]
 gi|187720091|gb|ACD21314.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia phytofirmans
           PsJN]
          Length = 312

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 61/202 (30%), Positives = 100/202 (49%), Gaps = 11/202 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           L+    +V + +TIS +       + +E   +  ++ + +  D L+G+ N   F + L  
Sbjct: 113 LMREREVVAVCVTISDVTH--VSIVQREREEAVAKLQEYADRDGLTGIANRRFFEARLRD 170

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   +S++ FD+D+FK+IND FGH VGD V+  ++ ++  V       GR GG
Sbjct: 171 EYTRWQRYGGDMSVLLFDLDHFKKINDQFGHGVGDTVLRVMAQRVAEVVRAQDTFGRFGG 230

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTI 236
           EEFA     +  ++A  +A  +R  I ++ + +  G  + +T S G A           +
Sbjct: 231 EEFALLLPCTPLEDAMRVAEKIRCTIADTPVEV-QGTCVPVTASVGGASARVGVPSYDVL 289

Query: 237 IYRADQALYVAKKSGRNRVVCF 258
           I  AD ALY AK+ GRNR V F
Sbjct: 290 INEADAALYSAKRQGRNRSVAF 311


>gi|167566764|ref|ZP_02359680.1| two component system fusin protein [Burkholderia oklahomensis
           EO147]
          Length = 491

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 11/205 (5%)

Query: 63  YILVENLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           +I  + L ++++   + ++ G  +    L+    +  R+ +L+R D L+GL N  AF  +
Sbjct: 282 HIRAQRLGVLMLVFGVVIVTGTALLSRELRWRRHAELRLQRLARTDALTGLGNRRAFDEN 341

Query: 122 LGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVG 173
           L             LS++F DID FK  ND +GH  GD V+  ++  L   V      V 
Sbjct: 342 LRREWARALRSSRPLSLLFVDIDQFKNYNDCYGHQAGDDVLREVARCLALNVRRAADDVS 401

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-- 231
           R GGEEF      +  + A+ +A  LR+ + +  I     P   +T+S G+         
Sbjct: 402 RYGGEEFVITLPDTDAKSASAIAEHLRRAVYDLDIEHEKSPYRRVTVSIGLVTSHDNAMH 461

Query: 232 PISTIIYRADQALYVAKKSGRNRVV 256
             + ++  AD ALY AK +GRNRV 
Sbjct: 462 SDTALVKMADAALYQAKSTGRNRVC 486


>gi|144899221|emb|CAM76085.1| GGDEF domain [Magnetospirillum gryphiswaldense MSR-1]
          Length = 578

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 84/178 (47%), Gaps = 8/178 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFK 140
           + + +       + +L+  D L+G  N   F+            Y   L+++  D+DYFK
Sbjct: 395 TDISDRKAMERELRRLATTDSLTGAFNRRHFLAAAGTELERANRYGNPLTLLMLDVDYFK 454

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH  GD  +  L + L         +GRLGGEEFA     +    A I A  LR
Sbjct: 455 SINDAHGHGTGDDALRRLVEGLRHALRDIDVIGRLGGEEFAVLLPETGMAGALITAERLR 514

Query: 201 KIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             + + ++++  G  +  T+S GI A R     +  ++ RAD+ALY AK  GRNRV  
Sbjct: 515 AQVADLRLDLPDGGQLAFTVSIGIAAPRAEDGSVEAVLARADKALYRAKDEGRNRVCA 572


>gi|115265648|dbj|BAF32909.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. phaseolicola]
          Length = 1067

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 15/192 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + E   S +RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 616 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQAWVVLMFLDLDRFK 675

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-----L 195
            IND+ GH  GD+++  ++ +L+    +   V R+GG+EF       + +EAA+     +
Sbjct: 676 PINDSLGHAAGDRMLQEMATRLLACVSSDDTVARMGGDEFTLLLQPDTSREAALNRAIHV 735

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  +   +      +  G    +T S GIA      + +S ++  AD A+Y AK+ G+N 
Sbjct: 736 AERILTSL--VTPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNN 793

Query: 255 VVCFSDIENNTC 266
              +    N T 
Sbjct: 794 FQFYQADMNATA 805


>gi|115525334|ref|YP_782245.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
 gi|115519281|gb|ABJ07265.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
          Length = 349

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 61/182 (33%), Positives = 94/182 (51%), Gaps = 9/182 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDI 136
            +  S + ++      + +L+  D ++G+ N   F+       +    Y   +S +  DI
Sbjct: 144 MLIYSDVTDIVRHAQDLERLATTDGMTGVYNRRHFLTLADREWARARRYGRPISFLMIDI 203

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK IND FGH VGD++I  L++           + R+GGEEFA     +   +A I+A
Sbjct: 204 DYFKSINDGFGHHVGDEMIVHLANLARDCKRECDVLARIGGEEFALLLPETDLPQAQIIA 263

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             LR  +    + ++SG SI  T+S G+A        IS ++  ADQALY AK +GRNRV
Sbjct: 264 ERLRAEVAAKALVVASG-SIPATVSIGVATSAAAMNDISDLMKAADQALYDAKHAGRNRV 322

Query: 256 VC 257
           +C
Sbjct: 323 IC 324


>gi|75675850|ref|YP_318271.1| diguanylate cyclase [Nitrobacter winogradskyi Nb-255]
 gi|74420720|gb|ABA04919.1| diguanylate cyclase [Nitrobacter winogradskyi Nb-255]
          Length = 354

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 94/187 (50%), Gaps = 9/187 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           +S   +  L  S   I   S  D L+GL N   F  ++        S  E LS++ FDID
Sbjct: 158 LSKVEINNLQHSLEAIRAESMTDPLTGLGNRKYFDRAVADAVALAMSEGEPLSLLMFDID 217

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK  NDN+GH  GD+V+  ++  L           R GGEEFA     ++ ++A  +A+
Sbjct: 218 HFKSFNDNYGHLTGDQVLRLVAMSLKQNIKGQDITARYGGEEFAVVLPSTALKQALTVAD 277

Query: 198 DLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +R+ +   ++   S   I   +TIS G++     +   +++ RAD  LY AK+ GRNR 
Sbjct: 278 HIRRAVMAKELKKKSTGEILGRVTISIGVSMLRPGDTPDSLMERADACLYAAKRGGRNRA 337

Query: 256 VCFSDIE 262
           +C +D E
Sbjct: 338 ICETDPE 344


>gi|4732058|gb|AAD28578.1|AF121341_2 putative response regulator CelR2 [Rhizobium leguminosarum]
          Length = 457

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 9/175 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
            L  S  +  +L+  D L+GL N     + L        +    LS++  DID FK +ND
Sbjct: 280 RLRASVKQTIELAVTDPLTGLYNRRYLDNHLNVLFNRSMARGRPLSVLITDIDRFKHVND 339

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+   S ++           R GGEEF      +S + AA +A  LR  IE
Sbjct: 340 TYGHDGGDEVLREFSSRVRSTIRGADLACRYGGEEFVVVMPDTSPEIAAAVAERLRAAIE 399

Query: 205 NSQINI-SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++   +  SG ++++T S GIA R         ++ +AD ALY AK +GRNRVV 
Sbjct: 400 SAPFMLKHSGEALNVTASFGIASRIASVLTPGQLMKQADLALYEAKNTGRNRVVA 454


>gi|218437596|ref|YP_002375925.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Cyanothece sp. PCC 7424]
 gi|218170324|gb|ACK69057.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Cyanothece sp. PCC 7424]
          Length = 1471

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 85/185 (45%), Gaps = 12/185 (6%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFK 140
             + E   +  ++   +  D L+GL N    +  +    ++         +++F D+D FK
Sbjct: 1028 DITERKQAEEQLRHAAVHDQLTGLPNRILLLDRIEQAIKRTQQEEKYLFALLFIDLDRFK 1087

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
             +ND+ GH VGD+++  ++D+L         V R GG+EF       +S  EA  +A  +
Sbjct: 1088 VVNDSLGHWVGDQLLGAIADKLKACVRPMDTVARFGGDEFVILLENLTSRTEATKMAQQI 1147

Query: 200  RKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
               + +S      G    I++S GI     ++E  S ++  AD A+Y AK+ GR R   F
Sbjct: 1148 TDELRSS--FCLQGQDFFISVSIGITFPSSYEESASELLRNADIAMYRAKEKGRARYTIF 1205

Query: 259  SDIEN 263
                +
Sbjct: 1206 DSKMH 1210


>gi|156740753|ref|YP_001430882.1| diguanylate cyclase [Roseiflexus castenholzii DSM 13941]
 gi|156232081|gb|ABU56864.1| diguanylate cyclase [Roseiflexus castenholzii DSM 13941]
          Length = 680

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 60/168 (35%), Positives = 91/168 (54%), Gaps = 10/168 (5%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            + + ID L+G+ N  +F  +              L+++ FDID+FK +ND +GH VGD+
Sbjct: 506 RRHATIDELTGVWNRRSFFENARREFLRSQRTLRPLAVLMFDIDHFKSVNDTYGHAVGDQ 565

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  L+++          +GR GGEEFA A   +    A  +A  LR  +EN+    + G
Sbjct: 566 ALRDLAERCRNQLRGIDIIGRYGGEEFAVALPDTDIDAAEHIAERLRTAVENTPFATAQG 625

Query: 214 PSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            SI +TIS G+A      +  +  II RAD+ALY+AK+SGRN V  +S
Sbjct: 626 -SISLTISIGVAVCHPDDQTTLDAIIDRADRALYLAKRSGRNSVRVWS 672


>gi|108805572|ref|YP_645509.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rubrobacter xylanophilus DSM 9941]
 gi|108766815|gb|ABG05697.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rubrobacter xylanophilus DSM 9941]
          Length = 1101

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 58/224 (25%), Positives = 104/224 (46%), Gaps = 20/224 (8%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGS---------ILKELFISYNRISQLSRIDCLSG 111
           LEY L+     V+     S++L    G+          + E      R+  L+  D L+G
Sbjct: 605 LEYRLIARDGRVVWVRDSSIVLRDAEGNPRWRQGLMVDITEQKNLEARLVHLAFHDPLTG 664

Query: 112 LLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           L N + F+  L           + L+++F D+D FK +ND+ GH  GD+++A ++ +L  
Sbjct: 665 LPNRALFMDRLEHALARAGRSGDVLAVLFIDLDNFKFVNDSLGHEAGDRLLALVARRLSG 724

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                  V RLGG+EF     G ++  EAA +A  + +++   +    +G  + ++ S G
Sbjct: 725 ATRPGDTVARLGGDEFTVLLEGIADGGEAARVAGRVAEVLR--EPFRVAGRELFVSASVG 782

Query: 224 IAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           I+        +  ++  AD A+Y AK+ G++R   F    + T 
Sbjct: 783 ISVSTAGSGSVEELMRGADLAMYEAKREGKDRYRVFDFGMSRTA 826


>gi|320158046|ref|YP_004190424.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS domain [Vibrio vulnificus MO6-24/O]
 gi|319933358|gb|ADV88221.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS domain [Vibrio vulnificus MO6-24/O]
          Length = 357

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 12/195 (6%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNE 127
           +  +  L  +++  + K   I  N++ +L+ ID L+G LN  AF+ +          Y+ 
Sbjct: 164 ARVLETLANWVAAQVHKHQQI--NKMIELAHIDPLTGALNRRAFVEATYFINDKPRHYDH 221

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
             +++  D+D FK+IND FGHP GDKV+  ++  L     +   + R GGEEFA      
Sbjct: 222 HTALLMIDLDKFKEINDQFGHPAGDKVLMQIAATLKKQIRSDDLLARFGGEEFAILLHHV 281

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYV 246
           + +EA  LA  LR  +E   I       I  T+S GIA      +    ++  AD ALYV
Sbjct: 282 NAEEAMTLAETLRVTVEQLTIEHHQ-HRIQCTVSIGIALPSSPNQGFEELMQLADNALYV 340

Query: 247 AKKSGRNRVVCFSDI 261
           AK+SGRN+++  SD+
Sbjct: 341 AKRSGRNQIIL-SDM 354


>gi|187927608|ref|YP_001898095.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Ralstonia pickettii 12J]
 gi|187724498|gb|ACD25663.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Ralstonia pickettii 12J]
          Length = 917

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 14/178 (7%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGS----------YNEKLSIVFFDIDYFKQIN 143
             +  +++ L++ D L+GL N + F   + +             +++++F D+D FK++N
Sbjct: 475 RAAQQQLTFLAQRDALTGLYNRAYFSQRMQAVMEQAASQANEGHQVAVLFLDLDGFKKVN 534

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKI 202
           D  GH  GD ++  ++ +L         + RLGG+EF        S  EA  LA  +   
Sbjct: 535 DTAGHEAGDHLLRIVAQRLSACVRQSDTLARLGGDEFVVLLDNVRSLGEAERLAKRIVHS 594

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I   Q   +SG   ++  S GIA    H    +T++  AD A+Y AK++GRN+   ++
Sbjct: 595 IA--QPFSTSGTEYYLGASIGIALYPEHGNDAATLLRCADAAMYNAKQNGRNQHRVYT 650


>gi|62182973|ref|YP_219390.1| diguanylate cyclase/phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62130606|gb|AAX68309.1| putative diguanylate cyclase/phosphodiesterase domain 1 [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322717479|gb|EFZ09050.1| diguanylate cyclase/phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 354

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 76/275 (27%), Positives = 125/275 (45%), Gaps = 22/275 (8%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58
           F  IW  H      +   + F  +  S+   +FI ++ F ANI  F +  L P       
Sbjct: 78  FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIDSIAFAANIVAFTLYSLPPVAVCLWL 137

Query: 59  ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112
                GL  + +  L +V I+I   +   Y   +  ++ +L      ++ LS +D L+GL
Sbjct: 138 NGNEQGLRILYLLALPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 197

Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +     S    ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 198 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 257

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      +  Q+A   A  +R+ + + +I      S+  ++TIS GIA 
Sbjct: 258 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTISIGIAP 317

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                 I   I +AD+ALY AK  GRN ++   D+
Sbjct: 318 LT-DRNIGDAIEKADKALYEAKHLGRNHILVSDDM 351


>gi|83594720|ref|YP_428472.1| diguanylate cyclase [Rhodospirillum rubrum ATCC 11170]
 gi|83577634|gb|ABC24185.1| Putative diguanylate cyclase (GGDEF domain) [Rhodospirillum rubrum
           ATCC 11170]
          Length = 360

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 17/233 (7%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
             +  SI  AT   +    L    L    G  +I   NL+  +   T+  L  +  G+  
Sbjct: 133 LGLLVSIVFATTATVGVTILAV--LDGAQGFSWIAPFNLAGALAGCTV--LAYFYEGTRA 188

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           K    +  ++  L++ D L+GL N    + + G           +LS++  D+D+FK IN
Sbjct: 189 K----AARQLETLAKSDPLTGLANRRGLLDAFGGAVLTRSRAPHRLSLLVLDLDHFKSIN 244

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD V+  ++  +  +      + R+GGEEFA     +    A  +A  +RK I
Sbjct: 245 DRYGHEAGDGVLCHVAHVIKGMIRANDLIARIGGEEFALLLPDTDLAGAREVAEKIRKAI 304

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
           E++ + I  G S+ +T+S G+AE   +    + +   AD  LY AKK+GRNRV
Sbjct: 305 ESTAL-IGPGGSLSVTVSIGVAELDPQYPDFAALFSSADHRLYQAKKAGRNRV 356


>gi|16763349|ref|NP_458966.1| hypothetical protein STY4904 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29144827|ref|NP_808169.1| hypothetical protein t4594 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213163690|ref|ZP_03349400.1| hypothetical protein Salmoneentericaenterica_28227 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213428406|ref|ZP_03361156.1| hypothetical protein SentesTyphi_24409 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213581134|ref|ZP_03362960.1| hypothetical protein SentesTyph_07976 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213650122|ref|ZP_03380175.1| hypothetical protein SentesTy_24448 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213859941|ref|ZP_03385645.1| hypothetical protein SentesT_26751 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289828940|ref|ZP_06546658.1| hypothetical protein Salmonellentericaenterica_20593 [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|25512874|pir||AF1071 probable membrane protein STY4904 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16505658|emb|CAD03389.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29140466|gb|AAO72029.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 354

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/275 (26%), Positives = 124/275 (45%), Gaps = 22/275 (8%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58
           F  IW         +   + F  +  S+   +FI ++ F ANI  F +  L P       
Sbjct: 78  FGGIWAARIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 137

Query: 59  ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112
                GL  + +  L +V I+I   +   Y   +  ++ +L      ++ LS +D L+GL
Sbjct: 138 NGNEQGLRILYLLALPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 197

Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +     S    ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 198 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 257

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      +  Q+A   A  +R+ + + +I      S+  ++T+S GIA 
Sbjct: 258 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 317

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                 I   I +AD+ALY AK  GRN ++   D+
Sbjct: 318 LT-DRNIGDAIEKADKALYEAKHLGRNHILVSDDM 351


>gi|302879727|ref|YP_003848291.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
 gi|302582516|gb|ADL56527.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
          Length = 900

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 13/215 (6%)

Query: 64  ILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  E+L++  +     ++  Y+   S L +   +  +I  L+  D L+ L N    +  L
Sbjct: 419 IYPEHLTVTAVKDRNGMVTNYVGVLSDLTQRKAAEEKIENLAFFDPLTKLPNRRLLLDRL 478

Query: 123 GSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                         +++F D+D FK +ND +GHP+GD ++  ++ +LV        V R 
Sbjct: 479 KQAMASATRSVTNGAVLFIDLDNFKALNDTYGHPMGDLLLQQVAKRLVSSVRDGDTVSRF 538

Query: 176 GGEEFAAAALGSSEQ--EAAILANDLRKII--ENSQINISSGPSIHITISAGIAERCHK- 230
           GG+EF     G  E   +AA  A  + + I     Q  +      H T S G      K 
Sbjct: 539 GGDEFVVLLEGFDENPLDAASQAETVGEQIFAALRQPYLIGTHEYHGTSSIGATLFNDKQ 598

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           + I  ++ +AD A+Y AKK GRN +  F      T
Sbjct: 599 QSIDELMKQADIAMYQAKKEGRNVLRFFDPQMQET 633


>gi|186472966|ref|YP_001860308.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia phymatum
           STM815]
 gi|184195298|gb|ACC73262.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia phymatum
           STM815]
          Length = 312

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 94/178 (52%), Gaps = 9/178 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           + +E   +  ++ + +  D L+G+ N   F + L         Y  +LSI+ FD+D+FK+
Sbjct: 135 MQREREEAVAKLQEYADRDGLTGIANRRYFEARLRDEYTRWQRYGGELSILLFDLDHFKK 194

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH VGD V+  ++ ++  V       GR GGEEFA     +  ++A ++A  +R 
Sbjct: 195 INDQFGHVVGDTVLREMAQRVAHVVRAQDTFGRFGGEEFALLLPCTPLEDAMLVAEKIRN 254

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCF 258
            I +  +++  G ++ +T S G A      P    +I  AD ALY AK+ GRNR V F
Sbjct: 255 TIGDRPVDV-QGVNVPVTASVGGAAARAGVPAYEALINEADAALYSAKRQGRNRSVAF 311


>gi|91777085|ref|YP_546841.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus
           KT]
 gi|91711072|gb|ABE51000.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus
           KT]
          Length = 951

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
             + EL     RI  L+  D L+GL N + F   +         + ++  ++  D+D FK
Sbjct: 503 RDITELMEYRERIHYLAYYDALTGLPNRTLFADRVNQVLADASWHEQRFGLMMLDLDRFK 562

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           ++ND  GH  GD ++  ++ +L     +   + RL G+EFA       +  + A +A  +
Sbjct: 563 EVNDTLGHQAGDDLLVAVAQRLNASVRSYDTIARLSGDEFAILLPELRNPDDLATIARKI 622

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
              I   +  +     + I+ S GIA      +  +T+   AD A+Y AK  GRN    +
Sbjct: 623 NDEIA--KPFLIHDKELFISTSIGIAIYPDDGDDRATLFKSADVAMYHAKNYGRNNYQFY 680

Query: 259 S 259
           S
Sbjct: 681 S 681


>gi|115358794|ref|YP_775932.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
 gi|115284082|gb|ABI89598.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
          Length = 492

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 94/211 (44%), Gaps = 10/211 (4%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           +    +      +LV       + +  + G+ L+    + + +  L+R D L+GL N   
Sbjct: 278 YAAWRHRAATIGALVATFGAAFIAVSVMLGTQLRRRMRAESELVLLARTDGLTGLNNRRT 337

Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
           F   L     +        S++F D+D FK  ND +GH  GD  +A ++  +      P 
Sbjct: 338 FGEVLDREWRRARRSRSVFSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPA 397

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               R GGEEF      + E  AA +A  +R  I+   +  +     H+T S G+A    
Sbjct: 398 DTAARYGGEEFVVLLPDTPETGAAQIAERIRAAIDELALEHAGSEHGHVTASIGLASWTP 457

Query: 230 KEPIS--TIIYRADQALYVAKKSGRNRVVCF 258
            + +   ++I  AD+ALY AK +GRN+V  F
Sbjct: 458 DDDVEAGSVIKAADEALYYAKATGRNKVAAF 488


>gi|218531236|ref|YP_002422052.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylobacterium chloromethanicum CM4]
 gi|218523539|gb|ACK84124.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylobacterium chloromethanicum CM4]
          Length = 1003

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 11/209 (5%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G E I V   + V+       +    + +   E   +   I  ++R D L+GL N   F 
Sbjct: 536 GGERIWVSETAWVVRDAAGRPIWFEGTVADATERKRAQALIEHMARHDALTGLPNRRLFQ 595

Query: 120 SSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
            +L             + ++  D+D FK +ND FGHP GD ++  ++ +L         V
Sbjct: 596 ETLAREIDGARRDGGSVVVLCCDLDRFKAVNDTFGHPAGDALLRVIAGRLRATLREGDVV 655

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERC-HK 230
            RLGG+EFA       +Q    +A   R++I+ +   +   G +  + +S G+A    H 
Sbjct: 656 ARLGGDEFAIILPSRGKQ--RRIAAFARRLIQAAGRPVDLGGRATTVGVSIGVAVWPKHG 713

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +   T+   AD ALY AK SGRN    + 
Sbjct: 714 DSADTLFKNADIALYRAKDSGRNTFRFYE 742


>gi|91780057|ref|YP_555265.1| diguanylate cyclase [Burkholderia xenovorans LB400]
 gi|91692717|gb|ABE35915.1| Putative diguanylate cyclase (GGDEF domain) [Burkholderia
           xenovorans LB400]
          Length = 312

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 63/202 (31%), Positives = 101/202 (50%), Gaps = 11/202 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           L+    +V + +TIS +       + +E   +  ++ + +  D L+G+ N   F + L  
Sbjct: 113 LMREREVVAVCVTISDVTH--VSIVQREREEAVAKLQEYADRDGLTGIANRRFFETRLRD 170

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   +S++ FD+D+FK+IND FGH VGD V+  ++ ++  V       GR GG
Sbjct: 171 EYTRWQRYGGDMSMLLFDLDHFKKINDQFGHGVGDTVLRVMAQRVAEVVRAQDTFGRFGG 230

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTI 236
           EEFA     +   +A  +A  +R  I ++ + +  G S+ +T S G A  R        +
Sbjct: 231 EEFALLLPCTPLDDAMRVAEKIRCTIADTPVEV-QGTSVPVTASVGGACARVGVPSYDVL 289

Query: 237 IYRADQALYVAKKSGRNRVVCF 258
           I  AD ALY AK+ GRNR V F
Sbjct: 290 INEADAALYSAKRQGRNRSVAF 311


>gi|222836476|gb|EEE74883.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 10/183 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           E   +  RI QL+  D L+ L N S  ++              +L++VF D+D FKQ+ND
Sbjct: 416 EREQARRRIRQLAFYDGLTTLPNRSLLLAQAEQALSVASHEGHELAVVFIDLDRFKQVND 475

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GHP GD+++  ++ ++     T    GRL G+EF          +AA +   L+  + 
Sbjct: 476 SLGHPAGDRLLCSVAQRIQAELRTGDIAGRLSGDEFVIVLPHCGGAQAAEVIERLQSAL- 534

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             +  +    S+  T S GIA        + T+++RAD A+Y AK  GR     FS   N
Sbjct: 535 -GEPCMIDDVSLASTASCGIAVFPADGRDMETLLHRADMAMYQAKSGGRGLYSFFSPEMN 593

Query: 264 NTC 266
              
Sbjct: 594 RLA 596


>gi|302878845|ref|YP_003847409.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Gallionella capsiferriformans ES-2]
 gi|302581634|gb|ADL55645.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Gallionella capsiferriformans ES-2]
          Length = 560

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 12/193 (6%)

Query: 81  LLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           L  Y++  S +         I   ++ D L+ L N    I  L             L+++
Sbjct: 365 LTHYVAAFSDITLRKADEENIRHQAQHDALTDLPNRVLLIDRLRQALSLAKRDKMHLALM 424

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQE 191
           + D+D FK +ND  GH VGD ++  ++ ++         V R+GG+EF      S  +++
Sbjct: 425 YLDLDQFKPVNDTLGHAVGDLLLQEVAARIRSCVREADTVARMGGDEFVVLLTSSEDQRD 484

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
           A  +A  +R  +E  Q+   SG  + I+ S G+A    H      ++  AD A+Y AK+S
Sbjct: 485 ALTVAEKIRIALE--QVFQISGARLQISSSLGVAVYPEHGASEHELLEHADIAMYYAKQS 542

Query: 251 GRNRVVCFSDIEN 263
           GRN+V  +     
Sbjct: 543 GRNQVRLYEPEMM 555


>gi|307611265|emb|CBX00924.1| hypothetical protein LPW_26251 [Legionella pneumophila 130b]
          Length = 552

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 86/205 (41%), Gaps = 14/205 (6%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           E I  EN   ++ S+    +   IS  +L+E       +   S  D L+GL N      +
Sbjct: 351 EEINKENNQEILASMMAEQIALGISNIMLRET------LRNQSLRDVLTGLYNRRYLNEA 404

Query: 122 LGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L     +       L+++  DID+FKQ ND FGH  GD VI   ++ L  V        R
Sbjct: 405 LDRELNRCARKSLSLAVLMLDIDHFKQFNDKFGHEAGDMVIQAFANVLRQVTRKEDIACR 464

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
            GGEEF         + A   A  +   +    +         ITIS G+     H   +
Sbjct: 465 YGGEEFILIIPEIDLEAALQRAQSIHDAVSRIHLRYGGNALTQITISIGLTMYPAHGNDM 524

Query: 234 STIIYRADQALYVAKKSGRNRVVCF 258
             +I  AD ALY AK SGRN+ V +
Sbjct: 525 QDLITAADNALYEAKNSGRNKTVLY 549


>gi|299535509|ref|ZP_07048830.1| diguanylate cyclase [Lysinibacillus fusiformis ZC1]
 gi|298728709|gb|EFI69263.1| diguanylate cyclase [Lysinibacillus fusiformis ZC1]
          Length = 325

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 12/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           +L      + +LS  D L+GL N   F   L  +        E  S+   DID+FK++ND
Sbjct: 153 KLLDMNAALVELSMTDKLTGLKNRRFFQEQLEQHFNRFYETAEPFSLCILDIDHFKKVND 212

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGD V+  L+  L +       V R GGEEF      +    A  +   +R  +E
Sbjct: 213 TYGHQVGDDVLVQLAQLLQIQVRLEDIVARYGGEEFMIILPETEIPVAKEIGEKIRHTVE 272

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                    P+  +TIS GIA    ++  +T+I +AD+ALY +K+ GRN+V  F +I
Sbjct: 273 Q-----DGWPTGSLTISMGIATVTSEDTETTLIKKADKALYESKEHGRNKVTHFHEI 324


>gi|258405249|ref|YP_003197991.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
 gi|257797476|gb|ACV68413.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
          Length = 769

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 95/175 (54%), Gaps = 9/175 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           +     + +++ +L+  D L+G+ N   F       + S   Y   LS++ +DID+FK+I
Sbjct: 589 VTAQKQAESKLRELATRDSLTGVWNRRYFFELAARELESAQRYKHPLSLILYDIDHFKRI 648

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH +GD+V+  L+  +         + R+GGEEFA     +  ++A  +A  + + 
Sbjct: 649 NDTYGHMIGDEVLRQLTQLVGANLRNVDLLARVGGEEFAVLLPHTYLEQAHTVARRILRG 708

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
           +  + I   +GP + +TIS G++   H +  + ++I+ ADQALY AK  GRN + 
Sbjct: 709 VNEAVIRTEAGP-LQLTISIGMSSSAHADNCLESLIHDADQALYAAKNKGRNSIC 762


>gi|153005101|ref|YP_001379426.1| diguanylate cyclase [Anaeromyxobacter sp. Fw109-5]
 gi|152028674|gb|ABS26442.1| diguanylate cyclase [Anaeromyxobacter sp. Fw109-5]
          Length = 758

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 58/187 (31%), Positives = 94/187 (50%), Gaps = 11/187 (5%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLS 130
           + ++ G  + SIL+     Y    +L+  D L+GL NH  F + L  +        +K+S
Sbjct: 562 LEVIAGQAAQSILRARL--YEEAERLATTDGLTGLTNHRTFQARLDEHLALAARSGQKVS 619

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D+FK +ND +GHPVGD+V+  ++  L         V R GGEEFA     +   
Sbjct: 620 LLLCDVDHFKSVNDTYGHPVGDEVLRGVARVLAGDARQTDVVARYGGEEFAIVMPATDGA 679

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKK 249
            A ++A  +R+ +         GP + +T+S G+A           ++ RAD  LY AK+
Sbjct: 680 SAVVIAERIRERLAAVTFQTEQGP-LRVTMSLGVATWPEDGARKPELVERADACLYHAKR 738

Query: 250 SGRNRVV 256
            GRN+ V
Sbjct: 739 HGRNQTV 745


>gi|320353214|ref|YP_004194553.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase [Desulfobulbus propionicus DSM 2032]
 gi|320121716|gb|ADW17262.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Desulfobulbus propionicus DSM 2032]
          Length = 442

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 59/192 (30%), Positives = 91/192 (47%), Gaps = 13/192 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           L+ G +    + E   +   I  ++  D L+ L N + F   L         Y   L ++
Sbjct: 247 LVGGVLVFQDVTERQEAAELIRYMANHDPLTNLPNRNYFRRRLPQAVSLAKRYGRILCLL 306

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQE 191
           F D+D FK IND FGH VGD V+  + ++L  V  T   V RLGG+EF      +   + 
Sbjct: 307 FIDLDRFKPINDQFGHGVGDIVLMQVGERLRSVLRTSDSVCRLGGDEFVILLESTDTLEG 366

Query: 192 AAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHK-EPISTIIYRADQALYVAKK 249
           A  +A   +K+I++    I +G  I  I  S GI+   +      T++  AD A+Y AKK
Sbjct: 367 ATRVA---QKVIDSLNEPIEAGDHICFIGASIGISVFPNDCSDAETMLRHADIAMYEAKK 423

Query: 250 SGRNRVVCFSDI 261
            GRN    ++ +
Sbjct: 424 KGRNCWQLYAPL 435


>gi|226940043|ref|YP_002795116.1| hypothetical protein LHK_01115 [Laribacter hongkongensis HLHK9]
 gi|226714969|gb|ACO74107.1| GGDEF domain protein [Laribacter hongkongensis HLHK9]
          Length = 585

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 86/183 (46%), Gaps = 11/183 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFF 134
           L Y +  ++ EL  S   + +LS  D L+GL N                 + ++ S++  
Sbjct: 406 LVYFNNVLINELVSSNRELEKLSSTDRLTGLANRLRLDEEVARQISLAQRHAQEFSLILL 465

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D+FK +ND  GH VGD+V+  ++  L          GR GGEEF      +S + A  
Sbjct: 466 DLDHFKLVNDQHGHQVGDRVLIEIAALLRQTLRNSDTAGRWGGEEFLIVLPQTSVESARK 525

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +A+ LR+ I       S GP    T S GIA     +   T+  R D A+Y +K+ GRNR
Sbjct: 526 VADKLRRTIAGHNFG-SVGPQ---TASFGIAVWHTGDTAKTLFVRVDHAMYQSKRDGRNR 581

Query: 255 VVC 257
           V  
Sbjct: 582 VTL 584


>gi|54295250|ref|YP_127665.1| hypothetical protein lpl2333 [Legionella pneumophila str. Lens]
 gi|53755082|emb|CAH16573.1| hypothetical protein lpl2333 [Legionella pneumophila str. Lens]
          Length = 565

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 86/205 (41%), Gaps = 14/205 (6%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           E I  EN   ++ S+    +   IS  +L+E       +   S  D L+GL N      +
Sbjct: 364 EEINKENNQEILASMMAEQIALGISNIMLRET------LRNQSLRDVLTGLYNRRYLNEA 417

Query: 122 LGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L     +       L+++  DID+FKQ ND FGH  GD VI   ++ L  V        R
Sbjct: 418 LDRELNRCARKSLSLAVLMLDIDHFKQFNDKFGHEAGDMVIQAFANVLRQVTRKEDIACR 477

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
            GGEEF         + A   A  +   +    +         ITIS G+     H   +
Sbjct: 478 YGGEEFILIIPEIDLEAALQRAQSIHDAVSRIHLRYGGNALTQITISIGLTMYPAHGNDM 537

Query: 234 STIIYRADQALYVAKKSGRNRVVCF 258
             +I  AD ALY AK SGRN+ V +
Sbjct: 538 QDLITAADNALYEAKNSGRNKTVLY 562


>gi|206577141|ref|YP_002237697.1| diguanylate cyclase [Klebsiella pneumoniae 342]
 gi|206566199|gb|ACI07975.1| diguanylate cyclase [Klebsiella pneumoniae 342]
          Length = 559

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 103/203 (50%), Gaps = 10/203 (4%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+ +  T+ LLL + +   +++ + +    +   +  D L+ LLN  A          
Sbjct: 357 LTLMWVLFTLMLLLSWLVIRRMVRNMSVLQTSLEWQAWHDALTRLLNRGALFEQAMAVAS 416

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   L+++  D+D+FK+IND +GH  GD+V++ ++  L         +GR+GGEEF
Sbjct: 417 ACQRSGRPLAVIQLDLDHFKRINDRYGHQAGDRVLSTVASTLASTVREGDLLGRVGGEEF 476

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIY 238
                 ++ Q+A  +A  LR  I+  ++ + +  ++ ++ S G++    +       +  
Sbjct: 477 CVVLPNTTLQDAVAVAERLRLRIQGREVFLHNNVTLRVSASLGVSTSEEQGEYQFEALQS 536

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
            AD+ LY+AK++GRN+V   S+ 
Sbjct: 537 VADRRLYLAKQNGRNQVCFRSEA 559


>gi|37675899|ref|NP_936295.1| hypothetical protein VVA0239 [Vibrio vulnificus YJ016]
 gi|37200439|dbj|BAC96265.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 380

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 12/195 (6%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNE 127
           +  +  L  +++  + K   I  N++ +L+ ID L+G LN  AF+ +          Y+ 
Sbjct: 187 ARVLETLANWVAAQVHKHQQI--NKMIELAHIDPLTGALNRRAFVEATYFINDKPRHYDH 244

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
             +++  D+D FK+IND FGHP GDKV+  ++  L     +   + R GGEEFA      
Sbjct: 245 HTALLMIDLDKFKEINDQFGHPAGDKVLMQIAATLKKQIRSDDLLARFGGEEFAILLHHV 304

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYV 246
           + +EA  LA  LR  +E   I       I  T+S GIA      +    ++  AD ALYV
Sbjct: 305 NAEEAMTLAETLRVTVEQLTIEHHQ-HRIQCTVSIGIALPSSPNQGFEELMQLADNALYV 363

Query: 247 AKKSGRNRVVCFSDI 261
           AK+SGRN+++  SD+
Sbjct: 364 AKRSGRNQIIL-SDM 377


>gi|224368331|ref|YP_002602494.1| hypothetical protein HRM2_12180 [Desulfobacterium autotrophicum
           HRM2]
 gi|223691047|gb|ACN14330.1| conserved hypothetical protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 488

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 60/196 (30%), Positives = 93/196 (47%), Gaps = 16/196 (8%)

Query: 69  LSLVIISITISLLLGYISGSILKELFIS--YNRISQLSRIDCLSGLLNHSAFI------- 119
           L+LV     I L+L      I+  L I+    R+++++  D L+G+ N  AF        
Sbjct: 288 LNLVFSFGIIGLIL------IVTNLTIASFQKRLTKMASTDKLTGVYNRRAFDIIIDQTL 341

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
             +      LSI+ FD+D+FK++ND +GH  GD +I                + R GGEE
Sbjct: 342 KEIQRKQTPLSIILFDLDHFKRVNDTYGHLAGDYIIQTTVGTAARTIRNSDILCRWGGEE 401

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F     G    +A   A  +R  + +          I +TIS G+ E   ++   T++ R
Sbjct: 402 FLILLKGCDLGDAMKTAEKIRTAVASQPARYGDDQ-ICVTISVGVTEHTGQDTKETLLKR 460

Query: 240 ADQALYVAKKSGRNRV 255
           AD+ALY+AK SG+NR 
Sbjct: 461 ADKALYLAKASGKNRC 476


>gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [Herminiimonas arsenicoxydans]
 gi|133738459|emb|CAL61504.1| Conserved hypothetical protein; putative EAL, GAF, PAS/PAC, GGDEF
           domains [Herminiimonas arsenicoxydans]
          Length = 859

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 10/183 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            +     +  RI  L+  D L+GL N +                   L+++F D+D+FK 
Sbjct: 417 DITNQKNAQARIESLAHFDVLTGLPNRALLDERAQRALRLAEEDQATLAVMFLDLDHFKN 476

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH +GD ++  L+ +L  V      + RLGG+EF     G++ + A  +A +L +
Sbjct: 477 INDTLGHNLGDTLLVELAQRLRAVLRRDDTLSRLGGDEFVLLLPGANRESAKKIAQELMR 536

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            I  ++        +++  S GIA          T+   AD A+Y AK+ GRN    F+ 
Sbjct: 537 AI--NEPYRIGSHELNVMASIGIAVYPADGMDFETLCKNADVAMYRAKQEGRNAYRSFTQ 594

Query: 261 IEN 263
              
Sbjct: 595 EMQ 597


>gi|115359689|ref|YP_776827.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
 gi|115284977|gb|ABI90493.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
          Length = 520

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 60/210 (28%), Positives = 95/210 (45%), Gaps = 15/210 (7%)

Query: 63  YILVENLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSA 117
           Y    + ++ I S    L +G++  S+L     ++   +   +  L+R D L+GL N   
Sbjct: 298 YAAWYDRAIPIGSAMAVLAIGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRM 357

Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
              +L     +       LS++F D+D+FK+ ND  GH  GD  +A ++  +      P 
Sbjct: 358 LDVTLAREWRRAARSQHALSLLFVDVDHFKRYNDTQGHQAGDDALAAVARCIAGCLRRPA 417

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--R 227
            +  R GGEEF           A  +A  +R  I +  I   +G S  +T S G+     
Sbjct: 418 DYAARYGGEEFVVVLPNVDTNGAVTIAEAIRTGILDLGIRHDTGVSGRLTASIGVTTCYP 477

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              + I   +  AD ALY AK+SGRN+VV 
Sbjct: 478 ERDDSIQAALKLADDALYRAKESGRNQVVV 507


>gi|288934559|ref|YP_003438618.1| diguanylate cyclase [Klebsiella variicola At-22]
 gi|288889268|gb|ADC57586.1| diguanylate cyclase [Klebsiella variicola At-22]
          Length = 559

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 53/203 (26%), Positives = 103/203 (50%), Gaps = 10/203 (4%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+ +  T+ LLL + +   +++ + +    +   +  D L+ LLN  A          
Sbjct: 357 LTLMWVLFTLMLLLSWLVIRRMVRNMSVLQTSLEWQAWHDALTRLLNRGALFEQAMAVAS 416

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   LS++  D+D+FK+IND +GH  GD+V++ ++  L         +GR+GGEEF
Sbjct: 417 ACQRSGRPLSVIQLDLDHFKRINDRYGHQAGDRVLSTVASTLASTVREGDLLGRVGGEEF 476

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIY 238
                 ++ Q+A  +A  LR  I+  ++ + +  ++ ++ S G++    +       +  
Sbjct: 477 CVVLPNTTLQDAVAVAERLRLRIQGREVFLHNNVTLRVSASLGVSTSEEQGEYQFEALQS 536

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
            AD+ LY+AK++GRN+V   S+ 
Sbjct: 537 VADRRLYLAKQNGRNQVCFRSEA 559


>gi|300692395|ref|YP_003753390.1| hypothetical protein RPSI07_2765 [Ralstonia solanacearum PSI07]
 gi|299079455|emb|CBJ52130.1| conserved protein of unknown function, eal-ggdef domains [Ralstonia
           solanacearum PSI07]
          Length = 903

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 11/175 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNF 146
             +  ++  L++ D L+GL N + F+  + +          +++++F D+D FK++ND  
Sbjct: 463 RAAEQQLKFLAQRDALTGLSNRAYFLQRMQAVLDEAATDGRQVAVLFLDLDGFKKVNDTA 522

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN 205
           GH  GD ++  ++ +L         + RLGG+EF        S  EA  LA  +   I  
Sbjct: 523 GHEAGDHLLRIVAQRLSACVRQTDTLARLGGDEFVVLLDQVCSLAEAERLARRIIAAIA- 581

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            Q   + G   ++  S GIA    H    +T++  AD A+Y AK++GRN+   F+
Sbjct: 582 -QPFSTGGTEYYLGASIGIAVHPEHGRDAATLLRCADAAMYNAKQNGRNQHRVFT 635


>gi|291287894|ref|YP_003504710.1| diguanylate cyclase with PAS/PAC sensor [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290885054|gb|ADD68754.1| diguanylate cyclase with PAS/PAC sensor [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 300

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 90/180 (50%), Gaps = 8/180 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
            I+   + E  +    + +LS ID L+G  N   F   L           + L I+ FD+
Sbjct: 119 MINIHDVTENAVLERHLKELSYIDGLTGAYNRRTFEHRLAEEFNRHKRDEKPLGIIMFDL 178

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK IND +GH  GD V+   +        T  F+ R GGEEF    +  +  +  ++A
Sbjct: 179 DFFKNINDKYGHQFGDVVLQQTAKLCKEKLRTEDFLARYGGEEFVCLLINQNVDQTYLVA 238

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+ +E + I+ +   S+ ITIS GI++  +      +I  AD+ALY AK +GRN VV
Sbjct: 239 ERLRESLEKAVIS-NGDVSVSITISIGISDSKYASTPEELIQCADKALYEAKNNGRNTVV 297


>gi|77460022|ref|YP_349529.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1]
 gi|77384025|gb|ABA75538.1| putative GGDEF domain protein [Pseudomonas fluorescens Pf0-1]
          Length = 553

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 97/222 (43%), Gaps = 20/222 (9%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYIS-------GSILKELFISYNRISQLSRID 107
           L  +Y   +     ++LV++ +    L G++          I K L  +   + Q++  D
Sbjct: 322 LQGWYDRAFQSSVIVALVMLGVA---LFGWVFIHQVRDGERIEKNLRKAQQALEQIATHD 378

Query: 108 CLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+GL N   F  SL          +  +S++  DID+FK+ ND +GH  GD  +  ++ 
Sbjct: 379 SLTGLANRRLFERSLEVEFARGARQSSPVSLIMLDIDFFKRYNDAYGHVAGDHCLTQVAQ 438

Query: 161 QLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +            R GGEEFA     +    A  +A  +R+ + +  I  S  P+ ++T
Sbjct: 439 VVKNCCQRKSDLAVRYGGEEFAVLLPDTDINGALAIAGQIRRSVMDKHITHSGSPTGYLT 498

Query: 220 ISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +S G         +     I RAD ALY AK +GRNR    S
Sbjct: 499 VSLGCYAFIPTGNDSPELFIQRADAALYQAKNAGRNRAAVLS 540


>gi|83310634|ref|YP_420898.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945475|dbj|BAE50339.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Magnetospirillum magneticum AMB-1]
          Length = 459

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 13/185 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
             + E   +  RI +L+  D L+GL N +     +         +  ++++++ D+D FK
Sbjct: 264 RDISERKENEERIKRLAHHDTLTGLPNRNLLNDRISHALARVRRHGGRMAVLYVDLDKFK 323

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
            IND  GH  GD V+  ++ +L     +   V R+GG+EF           EAA++A   
Sbjct: 324 PINDTLGHEAGDAVLKEVARRLDNCVRSSDTVSRVGGDEFVVVVEEIGRPGEAAMVA--- 380

Query: 200 RKIIENSQINIS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           RKIIE     +     S  +  S GIA        +  +   AD A+Y  K SGRN    
Sbjct: 381 RKIIEALGTPVPYEDHSCLVGASIGIAVFPDDGNTMEEVSKAADVAMYRVKNSGRNGYCF 440

Query: 258 FSDIE 262
           +SD  
Sbjct: 441 YSDSM 445


>gi|118581892|ref|YP_903142.1| diguanylate cyclase [Pelobacter propionicus DSM 2379]
 gi|118504602|gb|ABL01085.1| diguanylate cyclase [Pelobacter propionicus DSM 2379]
          Length = 474

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 60/186 (32%), Positives = 94/186 (50%), Gaps = 11/186 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E   S  +I  ++  D L+ L N + F   L            KL+++F D+D+FK 
Sbjct: 286 DVTERRKSEQQIRHMAYFDPLTDLPNRTLFFDRLNQAIAAANREQAKLAVLFLDLDHFKS 345

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLR 200
           IND  GH +GD+V+  +S +L     +   + R+GG+EF     G  E  +A+ +A  L 
Sbjct: 346 INDTQGHDIGDQVLIEVSRRLHRQIRSCDTLARMGGDEFVLVITGIGETLDASCVARKLI 405

Query: 201 KIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I +S ++I  G  +HI++S GIA          T+I  AD A+Y AKKSGRN    +S
Sbjct: 406 DSI-HSPLSIR-GNELHISMSMGIALFADSGADAETLIKNADLAMYHAKKSGRNTYRFYS 463

Query: 260 DIENNT 265
               ++
Sbjct: 464 PTMGSS 469


>gi|163852480|ref|YP_001640523.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163664085|gb|ABY31452.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 1003

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 11/209 (5%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G E I V   + V+       +    + +   E   +   I  ++R D L+GL N   F 
Sbjct: 536 GGERIWVSETAWVVRDAAGRPIWFEGTVADATERKRAQALIEHMARHDALTGLPNRRLFQ 595

Query: 120 SSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
            +L             + ++  D+D FK +ND FGHP GD ++  ++ +L         V
Sbjct: 596 ETLAREIDGARRDGGSVVVLCCDLDRFKAVNDTFGHPAGDALLRVIAGRLRATLREGDVV 655

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERC-HK 230
            RLGG+EFA       +Q    +A   R++I+ +   +   G +  + +S G+A    H 
Sbjct: 656 ARLGGDEFAIILPSRGKQ--RRIAAFARRLIQAAGRPVDLGGRATTVGVSIGVAVWPKHG 713

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +   T+   AD ALY AK SGRN    + 
Sbjct: 714 DSADTLFKNADIALYRAKDSGRNTFRFYE 742


>gi|91776976|ref|YP_546732.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus
           KT]
 gi|91710963|gb|ABE50891.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC and GAF sensor(s) [Methylobacillus flagellatus
           KT]
          Length = 1238

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/211 (26%), Positives = 99/211 (46%), Gaps = 18/211 (8%)

Query: 69  LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---- 123
           + ++ I+ +  +   ++S    + E   + +RI  L+  D L+ L N    +  L     
Sbjct: 769 MDILPIANSAGVFTHWVSVQRDITERKAAESRIQHLAFYDMLTNLPNRLLLLDRLEQALL 828

Query: 124 ---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                    +++F D+D FK +ND  GH  GD ++  ++ +L+        V RLGG+EF
Sbjct: 829 NSMRLKRSGALLFLDLDNFKTLNDTHGHDFGDMLLEQVAQRLLNSVRITDTVARLGGDEF 888

Query: 181 AAAALGSSE------QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--P 232
                  SE      QEA+++A+ +  ++  SQ    SG   + + S G+A  C+++   
Sbjct: 889 VVVVENLSEQGCNAAQEASLVADKI--LLALSQPFRLSGYEHYSSCSIGVALFCNEQQVT 946

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +  ++ RAD A+Y AK +GRN    F     
Sbjct: 947 VDELLKRADLAMYEAKAAGRNTFRFFDPAMQ 977


>gi|300313329|ref|YP_003777421.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gi|300076114|gb|ADJ65513.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 501

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 116/242 (47%), Gaps = 15/242 (6%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
           F  I  A +I +      +I  T +  L  +L   L L+I +    +LL  +   +LK +
Sbjct: 261 FRRIPDAPLIVLLGRSERFIFKTWYDTLYSVL---LLLIIFTALAGVLLMLVRRELLKRV 317

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQINDN 145
             +  ++  L+R D L+GLLN  +   +L +  ++         S +F D+DYFK+ ND 
Sbjct: 318 -AAEKQLEDLARTDGLTGLLNRRSLDEALLAVWQRSQRSPTAGFSTLFIDVDYFKRYNDT 376

Query: 146 FGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH +GD V+  ++  L           GR GGEEF      + E  A  +A  L + I 
Sbjct: 377 YGHEMGDTVLQAVAAVLREHLQRQNDLAGRYGGEEFVVLLEQTDEHGALRMAQQLCEAIY 436

Query: 205 NSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           N  I  S  P   I++S G+A   R   + +  ++  AD ALY+AK+ GRNRV      +
Sbjct: 437 NRGIPHSGSPLGVISVSIGVATMNRAPHQRMEDVLNAADHALYIAKREGRNRVCVAHPGQ 496

Query: 263 NN 264
           N+
Sbjct: 497 ND 498


>gi|114563962|ref|YP_751476.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
 gi|114335255|gb|ABI72637.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
          Length = 1020

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 19/226 (8%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISG--------SILKELFISYNRISQLSRIDCL 109
           ++G  ++  +N    +I +TI+ ++   S         S + E   +   I + +  D L
Sbjct: 529 WHGEVWMRRKNGENYLILLTINSIIRTKSQGARFVALFSDITEKKQTEELIWRQANYDAL 588

Query: 110 SGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GL N    ++ L          +   +++F D+DYFK+IND  GH +GD ++   +++L
Sbjct: 589 TGLPNRRMLLTFLNQEVFHSDRQHNHFALMFLDLDYFKEINDTLGHDMGDVLLIETAERL 648

Query: 163 VVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                    V RLGG+EF               +A  + K +  S+  +    + +I+ S
Sbjct: 649 KNCVRETDVVARLGGDEFTIVLTNLEDTHGVERVAQQILKRL--SEPYLLGDQTAYISGS 706

Query: 222 AGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            GI            ++  ADQA+Y AK  GRNR   F+    +  
Sbjct: 707 IGITLFPDDAKTTEALLKNADQAMYSAKSHGRNRFNYFTSAMQDNA 752


>gi|299133471|ref|ZP_07026665.1| diguanylate cyclase [Afipia sp. 1NLS2]
 gi|298591307|gb|EFI51508.1| diguanylate cyclase [Afipia sp. 1NLS2]
          Length = 379

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 76/265 (28%), Positives = 125/265 (47%), Gaps = 18/265 (6%)

Query: 6   KDFLSIWLCHEKNLESF-SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI 64
            +   ++LC    + +  S  + M+   I + +  A + ++    L  I ++  +G    
Sbjct: 115 PEVGCVFLCSLFVIVALGSLRSTMLQIGIAWGVLTAGLAWL--FLLTTIPISMPHGTFAE 172

Query: 65  LVENLSLVIISITISLLLGYISGSILK-------ELFISYNRISQLSRIDCLSGLLNHSA 117
               L L +++I   +++G  S ++ +        L  +Y RI +L+  D L+G  N  +
Sbjct: 173 RFATLFLFVVTIGRCMMVGMFSSALRESFYTQGLALKEAYRRIEELAEFDELTGAHNRRS 232

Query: 118 FI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
            +                 SI   D+D+FK+IND +GHPVGD+V+   +  +        
Sbjct: 233 IMHALVEESERAIRTKSPCSIALIDLDFFKKINDLYGHPVGDEVLRTFAITMFANVRAID 292

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
             GR GGEEF      ++E  A  +A+ LR II +   N S  P I +T+SAG+A   H 
Sbjct: 293 KFGRYGGEEFLLIMPETAEDTAEKVADRLRMIIADIDWN-SISPGIAVTMSAGVATLRHD 351

Query: 231 EPISTIIYRADQALYVAKKSGRNRV 255
           E    ++ RAD ALY AK  GRNR+
Sbjct: 352 EAPENLLLRADMALYRAKDRGRNRI 376


>gi|298486489|ref|ZP_07004549.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298158966|gb|EFI00027.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 636

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 104/214 (48%), Gaps = 19/214 (8%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +G   +L  ++  + ++ T  LL+   +   + +L  +  ++  L+  D L+GL N +  
Sbjct: 152 HGAPLVLDISVEFITLNNTACLLM---NARDIGQLKTAQAQVQHLAYHDPLTGLPNRALL 208

Query: 119 ISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           +  L          N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         
Sbjct: 209 MDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 268

Query: 172 VGRLGGEEFAAAALGSS------EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
           V RLGG+EF     G         Q+  +LA++LR+++         G  + +T S GI 
Sbjct: 269 VARLGGDEFVVLICGLDGTRDEVTQQVRVLADNLRELLAEPMF--LDGHRLQVTPSIGIV 326

Query: 226 ERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
                    + ++ RAD ALY AK SGRN    F
Sbjct: 327 LIPDDGLAPADLLKRADIALYRAKDSGRNASQFF 360


>gi|296272721|ref|YP_003655352.1| PAS/PAC and GAF sensor-containg diguanylate cyclase [Arcobacter
           nitrofigilis DSM 7299]
 gi|296096895|gb|ADG92845.1| diguanylate cyclase with PAS/PAC and GAF sensors [Arcobacter
           nitrofigilis DSM 7299]
          Length = 649

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 60/180 (33%), Positives = 84/180 (46%), Gaps = 7/180 (3%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
            SI  E       +   +  D L+GL N   FI            Y   LS++ FDID+F
Sbjct: 469 ASIAIENRKVRKELEFRAYFDFLTGLPNRRYFIEQSELEISRKLRYGGSLSLIMFDIDHF 528

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND FGH +GD V+  +++    V      +GR+GGEEFA     +  +EA  +A  L
Sbjct: 529 KILNDKFGHKMGDLVLQKIAEITRSVLRDIDIIGRIGGEEFAILLPRTDIKEAENIAERL 588

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           R  I    +        + T S G+      + I  ++  AD ALY AK SGRNRV  F+
Sbjct: 589 RLEISKGIVKTDKVEITNFTASFGVVLDTKNKTIDELLVSADNALYEAKNSGRNRVCIFN 648


>gi|56478889|ref|YP_160478.1| signal transducer protein [Aromatoleum aromaticum EbN1]
 gi|56314932|emb|CAI09577.1| putative signal transducer protein with histidine kinase domain
           [Aromatoleum aromaticum EbN1]
          Length = 920

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 9/188 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S +        R+  L+  D L+ L N   F   L         +   L+++F D+D FK
Sbjct: 470 SDISAAKQYEARLQHLAHYDALTELPNRLLFRERLADMLVRAERHGNMLALLFIDLDGFK 529

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND  GH  GD+++  ++++L           RLGG+EFA       S +EA I+A ++
Sbjct: 530 PINDTLGHAAGDELLRRVAERLGGCVRASDTTARLGGDEFAVLLDELRSPEEAGIIARNI 589

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
              +E   I        +I+ S GI           T++ +AD A+Y AK+ G+NR   F
Sbjct: 590 LDTLERPYILAGQPQCQYISASIGIGCYPSDSLDAETLLRQADMAMYRAKQEGKNRYRFF 649

Query: 259 SDIENNTC 266
           +   N   
Sbjct: 650 APEINAQA 657


>gi|330722115|gb|EGH00025.1| Signaling protein with a periplasmic binding domain and GGDEF
           domain [gamma proteobacterium IMCC2047]
          Length = 318

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 94/182 (51%), Gaps = 11/182 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
           L  S  +I  ++  DC++GL N + F   L         Y+ + +++F D+D FK+IND 
Sbjct: 129 LVASERQIRDMAFTDCVTGLANRNLFTDRLDQMILDSKRYHHEFALLFIDLDGFKKINDT 188

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIE 204
           +GH VGDK++A   +++   F     V R GG+EF      + + +A A +   L K + 
Sbjct: 189 YGHLVGDKLLAMTGERISASFRDSDIVARFGGDEFLVIVKNTGDVKAIAQVCGKLLKRLA 248

Query: 205 NSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             + +        +T S GIA   CH    S +I  AD+A+Y AK++GRN  V  S+ ++
Sbjct: 249 --EPHYIDDLEFTVTASIGIAHYPCHATSSSRLIQMADKAMYKAKRAGRNCFVICSEEQS 306

Query: 264 NT 265
            T
Sbjct: 307 ET 308


>gi|39996000|ref|NP_951951.1| GAF domain/GGDEF domain-containing protein [Geobacter
           sulfurreducens PCA]
 gi|39982765|gb|AAR34224.1| GAF domain/GGDEF domain protein [Geobacter sulfurreducens PCA]
          Length = 688

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 84/183 (45%), Gaps = 12/183 (6%)

Query: 87  GSILKELFISYNR---ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
            SI+ E  +S  R   + QLS  D L+GL N       +         +N  L+++  D+
Sbjct: 485 ASIMIERALSIERADILEQLSITDHLTGLYNRRFLKRRMEEELARSIRHNLNLTVMLIDL 544

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK  ND  GH  GD+ +   +  L         V R GGEEF     G+S++E+  +A
Sbjct: 545 DHFKIYNDLCGHLAGDRALKRTAKILSETARQMDVVTRFGGEEFCIILPGTSKKESIFVA 604

Query: 197 NDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNR 254
             +R+ IE           +  +T S GIA          +++  AD ALY AK  GRNR
Sbjct: 605 ERIRREIEGEDFPHEDNLPLGRLTASIGIASFPEDGSTEASLVKAADVALYRAKSDGRNR 664

Query: 255 VVC 257
           V+ 
Sbjct: 665 VII 667


>gi|24373609|ref|NP_717652.1| GGDEF family protein [Shewanella oneidensis MR-1]
 gi|24347944|gb|AAN55096.1|AE015647_2 GGDEF family protein [Shewanella oneidensis MR-1]
          Length = 319

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 58/180 (32%), Positives = 84/180 (46%), Gaps = 10/180 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
           G  ++ L      +S  +  D L+ L N  A+       I      + + S++  DID F
Sbjct: 139 GQEVQNLKTEMENLSLAAMTDQLTSLHNRRAYEIAIQDHIHRAEEQHTRCSLLLIDIDRF 198

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND +GH VGDKV+A+++  L        FV R GGEEF      +   +A  +A  L
Sbjct: 199 KVFNDTYGHQVGDKVLAYVALALKQCVRGDDFVARYGGEEFVVLLPNTHFHDALQVAETL 258

Query: 200 RKIIENSQINISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R  I   ++ I     +    IT+S G+A     +   T+  RAD+ALY AK  GRN V 
Sbjct: 259 RGRISERRLAIGKDKKLSLGAITVSIGLASLQKGDDAETLFSRADKALYEAKSDGRNCVR 318


>gi|300310170|ref|YP_003774262.1| diguanylate cyclase/phosphodiesterase A protein [Herbaspirillum
           seropedicae SmR1]
 gi|300072955|gb|ADJ62354.1| diguanylate cyclase/phosphodiesterase A protein [Herbaspirillum
           seropedicae SmR1]
          Length = 1002

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 10/183 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           E   +  RI QL+  D L+GL N S         I++       ++++F D+D FKQ+ND
Sbjct: 546 EREDARARIHQLAFYDSLTGLPNRSLLLVQAGQAIAAAERNCSTVAVMFIDLDRFKQVND 605

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH  GD+++  ++ +L         VGRL G+EF         Q    +   +++ + 
Sbjct: 606 SLGHQAGDELLRTVATRLQSQARRSDIVGRLSGDEFVVVLTQYDTQHLTEVVKRIQERLA 665

Query: 205 NSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                  +G  ++ + S G+A        I T+++RAD A+Y AK   R R   FS+  N
Sbjct: 666 --MPCHINGTPLNPSASIGVAIFPDNGNDIETLLHRADIAMYQAKAVNRGRFSFFSEEMN 723

Query: 264 NTC 266
           +  
Sbjct: 724 SMA 726


>gi|330869804|gb|EGH04513.1| sensory box protein [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 722

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 104/214 (48%), Gaps = 19/214 (8%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +G   +L  ++  + ++ T  LL+   +   + +L  +  ++  L+  D L+GL N +  
Sbjct: 238 HGAPLVLDISVEFITLNNTACLLM---NARDIGQLKTAQAQVQHLAYHDPLTGLPNRALL 294

Query: 119 ISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           +  L          N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         
Sbjct: 295 MDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 354

Query: 172 VGRLGGEEFAAAALGSS------EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
           V RLGG+EF     G         Q+  +LA++LR+++         G  + +T S GI 
Sbjct: 355 VARLGGDEFVVLICGLDGTRDEVTQQVRVLADNLRELLAEPMF--LDGHRLQVTPSIGIV 412

Query: 226 ERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
                    + ++ RAD ALY AK SGRN    F
Sbjct: 413 LIPDDGLAPADLLKRADIALYRAKDSGRNASQFF 446


>gi|289626963|ref|ZP_06459917.1| sensory box protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289650793|ref|ZP_06482136.1| sensory box protein [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 721

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 104/214 (48%), Gaps = 19/214 (8%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +G   +L  ++  + ++ T  LL+   +   + +L  +  ++  L+  D L+GL N +  
Sbjct: 237 HGAPLVLDISVEFITLNNTACLLM---NARDIGQLKTAQAQVQHLAYHDPLTGLPNRALL 293

Query: 119 ISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           +  L          N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         
Sbjct: 294 MDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 353

Query: 172 VGRLGGEEFAAAALGSS------EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
           V RLGG+EF     G         Q+  +LA++LR+++         G  + +T S GI 
Sbjct: 354 VARLGGDEFVVLICGLDGTRDEVTQQVRVLADNLRELLAEPMF--LDGHRLQVTPSIGIV 411

Query: 226 ERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
                    + ++ RAD ALY AK SGRN    F
Sbjct: 412 LIPDDGLAPADLLKRADIALYRAKDSGRNASQFF 445


>gi|218780814|ref|YP_002432132.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762198|gb|ACL04664.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 593

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 93/205 (45%), Gaps = 12/205 (5%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
             +YI         +S TI+  L      + KE  ++  +I  +S  D L+GL N   F 
Sbjct: 389 AFDYISKSRADAATLSRTIATALE--KARLRKETRLAQEKIVDMSITDELTGLSNRRYFN 446

Query: 120 S-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
                      +    L++   D+D+FK +ND +GH  GDKV+A     L   F +   +
Sbjct: 447 EVVDIEVQKARNNGSPLTLCMMDLDHFKNVNDTYGHLTGDKVLAETGALLKQGFRSHDMI 506

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232
            R GGEEFA     +  + A       R+ ++   ++      + ITIS GIA    ++ 
Sbjct: 507 FRYGGEEFAVILPDTDLEHAKRACERFRESVQEHVMDAKV-KQVKITISIGIANMPGEQI 565

Query: 233 IS--TIIYRADQALYVAKKSGRNRV 255
           +    +I  AD ALY AK+ GRNRV
Sbjct: 566 MEAGELIDAADHALYRAKELGRNRV 590


>gi|152991274|ref|YP_001356996.1| hypothetical protein NIS_1532 [Nitratiruptor sp. SB155-2]
 gi|151423135|dbj|BAF70639.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 332

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 59/168 (35%), Positives = 87/168 (51%), Gaps = 3/168 (1%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +  ++ +  + +  D L+ L N +A    I  L   +   S++  DID FK+IND FGH 
Sbjct: 163 IEDAFKQQEKEAVHDPLTNLYNRNALKKEIKLLEEASLPYSVIIIDIDDFKKINDTFGHI 222

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GDKV+  L +           V R GGEEF    L +    A  LA  L+++I +  I 
Sbjct: 223 AGDKVLRELGEIFHTYVRKDSKVYRYGGEEFLIILLHTDIDGAKKLAQRLKEVISHHTIV 282

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  G +I +T S GIA++   E    ++ RADQALY AK+ G+NRV  
Sbjct: 283 LDDGTNIIVTASFGIAQKKGDESFERVLKRADQALYKAKRDGKNRVEV 330


>gi|107102419|ref|ZP_01366337.1| hypothetical protein PaerPA_01003481 [Pseudomonas aeruginosa PACS2]
 gi|218890931|ref|YP_002439797.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|218771156|emb|CAW26921.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
          Length = 525

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 85/174 (48%), Gaps = 8/174 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            +         +  L+  D L+GL N  +F+            +      +  DID+FK 
Sbjct: 346 DISRRKAMEQELRLLASTDTLTGLHNRHSFLHQAELMLKAAERFRHPCVALMLDIDHFKN 405

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD+ +  +++ L         +GRLGGEEFAA     S  +A  +A  LR 
Sbjct: 406 INDSHGHLTGDRALQRVAETLRQGLREVDLLGRLGGEEFAALLPEVSLDQALDVAERLRA 465

Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
            +E  ++N   G  + +T+S G+A R    + + +++ RAD ALY AK  GRNR
Sbjct: 466 GVEALRVNNPDGEPLRMTVSIGVALRRDAGDDLESLLVRADSALYQAKSGGRNR 519


>gi|254457555|ref|ZP_05070983.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207086347|gb|EDZ63631.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 539

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 61/184 (33%), Positives = 90/184 (48%), Gaps = 11/184 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVF 133
           +L  ++   +   ++    +  ++  D L+ L N S     L          +  LSI+F
Sbjct: 359 VLYLVTFDEITNEYVKIKELEHMASTDVLTKLFNRSKLNDVLEKEIALSNAISSPLSIIF 418

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK +ND +GH VGDKV+  +++ +           R GGEEF      +    A+
Sbjct: 419 IDIDHFKDVNDTYGHDVGDKVLIDIANIISSSTRASDIAARWGGEEFMITLQSTDTAHAS 478

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           ILA  LR  +E     I      ++TIS G+ E  + E   T I R D+ALY AK+SGRN
Sbjct: 479 ILAEKLRATVEEYIFAIVG----NLTISLGVTEYMNNESEETFIKRVDKALYEAKESGRN 534

Query: 254 RVVC 257
           RVV 
Sbjct: 535 RVVI 538


>gi|300022157|ref|YP_003754768.1| response regulator receiver modulated diguanylate cyclase
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523978|gb|ADJ22447.1| response regulator receiver modulated diguanylate cyclase
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 456

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 60/189 (31%), Positives = 85/189 (44%), Gaps = 13/189 (6%)

Query: 81  LLGYISGSILKELFI--SYNRISQ---LSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           LL  +   I ++       +R+++   LS  D L+GL N       L             
Sbjct: 264 LLARVKTQIKRKRHSDFLRHRLAESVELSVTDSLTGLHNRRYMEGHLRTLVSEAIRTGRS 323

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS++  DID+FK +ND  GH  GD V+   S +L           RLGGEEF      + 
Sbjct: 324 LSMLVADIDHFKDVNDTHGHDAGDAVLKEFSVRLKRNTRGVDLACRLGGEEFVIIMPDTD 383

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVA 247
              A  +   LR  +   +  I  G S+ +T S GIA     ++   ++  RAD ALY A
Sbjct: 384 LDRAYQIGERLRACVAADEFTIDGGQSVRVTASVGIATLESPQDTPESMFKRADNALYKA 443

Query: 248 KKSGRNRVV 256
           K+ GRNRVV
Sbjct: 444 KRRGRNRVV 452


>gi|307154701|ref|YP_003890085.1| PAS/PAC and GAF sensors-containing diguanylate cyclase [Cyanothece
           sp. PCC 7822]
 gi|306984929|gb|ADN16810.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp.
           PCC 7822]
          Length = 679

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 8/169 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
              +   S  D L+GL N     +            N  L ++  DID+FK+ ND +GH 
Sbjct: 496 RETLQHQSFRDPLTGLFNRRYLEASMIRELHRATRNNNSLGVIILDIDHFKRFNDTWGHH 555

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD VI  +   L           R GGEEF      +S ++    A  L+  I+   + 
Sbjct: 556 AGDAVIKVMGKLLQENVRESDIACRYGGEEFIIILPDASLEDTEKRAKQLQTNIKTLNVQ 615

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +       IT+S G+A    H +    +++RAD+ALY AK+ GR+R+VC
Sbjct: 616 VRDQKLESITVSMGVASFPKHGDSYELLLHRADEALYQAKQQGRDRIVC 664


>gi|46580271|ref|YP_011079.1| GGDEF domain-containing protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449688|gb|AAS96338.1| GGDEF domain protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|311233747|gb|ADP86601.1| diguanylate cyclase [Desulfovibrio vulgaris RCH1]
          Length = 331

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 9/180 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           L+E   +   +++    D L+GL N  AF   L +  E+       LS+V  DID+FK +
Sbjct: 122 LREWQRTIEEMARQRDTDPLTGLPNRRAFARHLEAELERTRRGRGDLSLVILDIDHFKSV 181

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           NDN+GHP GD+V+  L+ QL           R+GGEEFA    G+S  +A  L   + + 
Sbjct: 182 NDNYGHPCGDEVLLRLASQLQTSVRLYDLAARIGGEEFAIVLPGASALKAQALCERILQR 241

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFSD 260
             ++ ++    P  H+T S GIA        P S ++ RAD+ALY AK++GRNR+    +
Sbjct: 242 FASTGMDCPGVPPFHVTFSGGIATCTTGVTCPASLLVDRADKALYEAKQAGRNRIYVHRE 301


>gi|17545307|ref|NP_518709.1| hypothetical protein RSc0588 [Ralstonia solanacearum GMI1000]
 gi|17427599|emb|CAD14118.1| probable signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum GMI1000]
          Length = 903

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 11/175 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNF 146
             +  ++  L++ D L+GL N + F+  + +          + +++F D+D FK++ND  
Sbjct: 463 RAAEQQLKFLAQRDALTGLYNRAYFLQRMQAVLDEAVTDGRQAAVLFLDLDGFKKVNDTA 522

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIEN 205
           GH  GD ++  ++ +L         + RLGG+EF        S  EA  LA  +   I  
Sbjct: 523 GHEAGDHLLRIVAQRLSACVRQTDTLARLGGDEFVVLLDQVRSLAEAEQLARRIIAAIA- 581

Query: 206 SQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            Q   + G   ++  S GIA    H +  +T++  AD A+Y AK++GRN+   F+
Sbjct: 582 -QPFSTGGTEYYLGASIGIAVHPDHGQDAATLLRCADAAMYNAKQNGRNQHRVFT 635


>gi|114707398|ref|ZP_01440295.1| putative transcription regulator (with tandem n-terminal response
           regulator domains) protein [Fulvimarina pelagi HTCC2506]
 gi|114537279|gb|EAU40406.1| putative transcription regulator (with tandem n-terminal response
           regulator domains) protein [Fulvimarina pelagi HTCC2506]
          Length = 454

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/173 (31%), Positives = 85/173 (49%), Gaps = 8/173 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L ++  R  +L+ ID L+GL N     + +              S++  DID+FK+IND 
Sbjct: 280 LRMTLERTLELAVIDGLTGLHNRRFLNTHMSRAVTEAERRQGTFSLIVADIDHFKRINDT 339

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD V+   + +L           R+GGEEFA     + E+ A + A   R  IE 
Sbjct: 340 YGHDGGDIVLREFARRLEASVRASDLPCRIGGEEFAVLLPNADERTARVTAERFRAAIEA 399

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
               IS    + +T+S G+A      + +ST++  AD ALY AK +GRN++  
Sbjct: 400 RPFIISDALELPVTVSVGLAIFPRGGQEVSTLMRAADAALYRAKSAGRNQIAI 452


>gi|71907676|ref|YP_285263.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71847297|gb|AAZ46793.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 827

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 53/193 (27%), Positives = 94/193 (48%), Gaps = 11/193 (5%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFD 135
             I    + E      +++ L++ D L+GL N +     L         +N+++ ++F D
Sbjct: 373 AVIVFHDVSESRAMALKMAHLAQHDFLTGLPNRALLTERLSRAIGQARRHNKRVGMLFLD 432

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAI 194
           +DYFK IND+ GH VGD+++  ++++L+V       V R GG+EF          ++AA 
Sbjct: 433 LDYFKHINDSLGHAVGDQLLQQVAERLIVCIRDTDTVCRQGGDEFVILLAEIEQARDAAP 492

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253
           +A  L       +  + +G  +H+++S GI+          T++  AD A+Y AK +GRN
Sbjct: 493 IAEKLLAAFA--EPCLIAGNELHVSLSIGISIYPDDGMDADTVMKNADTAMYHAKANGRN 550

Query: 254 RVVCFSDIENNTC 266
               F+   N   
Sbjct: 551 NYQFFTTEMNTRA 563


>gi|307821994|ref|ZP_07652226.1| diguanylate cyclase/phosphodiesterase [Methylobacter tundripaludum
           SV96]
 gi|307736560|gb|EFO07405.1| diguanylate cyclase/phosphodiesterase [Methylobacter tundripaludum
           SV96]
          Length = 662

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 111/244 (45%), Gaps = 23/244 (9%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYIL----VENLSLVIISITISLLLGYISGSILKEL 93
           F+     I  I L  + + P     YIL     + + L+ + IT +  L  +   +   L
Sbjct: 157 FLGAETVIHVIRLITLIMRPTAISSYILSPEQPDRVFLMWLFITGTARLLIMVTLVSARL 216

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNF 146
               + ++QL+  D L+ L N    +  L           ++L+++  D+D FK +ND+ 
Sbjct: 217 ---QDELNQLATQDSLTQLPNRRFLLERLKHGIDVERRDGKQLALLMLDLDRFKAVNDSL 273

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKII-- 203
           GH  GD+++  ++D++         V RLGG+EF       +  ++AA +A ++   +  
Sbjct: 274 GHSAGDELLQQVADRIQSRLRDVDMVARLGGDEFIVLLEDIAHPEDAARVAEEIVADLSR 333

Query: 204 -----ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
                 +++ +   G  + I  S GI+    H +    ++ +AD A+Y AK++GR     
Sbjct: 334 PFQLPRSNETDHEPGHEVQIGASIGISLYPQHGDNPELLMEQADIAMYEAKQAGRGCFAY 393

Query: 258 FSDI 261
           FS+ 
Sbjct: 394 FSEE 397


>gi|77918778|ref|YP_356593.1| GGDEF domain-containing protein [Pelobacter carbinolicus DSM 2380]
 gi|77544861|gb|ABA88423.1| GGDEF domain containing protein [Pelobacter carbinolicus DSM 2380]
          Length = 431

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 66/176 (37%), Positives = 95/176 (53%), Gaps = 8/176 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNE---KLSIVFFDIDYFK 140
           +IL  L     +   L+ ID L+GL N  AF       L  Y+E    ++++  D+D FK
Sbjct: 255 TILGLLMAEKEKFKSLAEIDPLTGLYNRRAFFGLSGEILKKYSELDRPITVIMLDVDSFK 314

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           QIND +GH VGD+V+  LSD +   F     +GR+GGEEFA     S   +      +LR
Sbjct: 315 QINDVYGHSVGDQVLVALSDLIKKTFRGSDVIGRIGGEEFAILCPNSDFVKDRAPLENLR 374

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           K IE  QI+ + G  I +T+S G       + +  +I +AD+ LY AK+SGRN +V
Sbjct: 375 KEIEGFQIS-AEGHEIKVTVSIGATTGKKTDDLGALIKQADKMLYRAKESGRNCIV 429


>gi|120612636|ref|YP_972314.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
 gi|120591100|gb|ABM34540.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
          Length = 591

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 63/219 (28%), Positives = 104/219 (47%), Gaps = 25/219 (11%)

Query: 60  GLEYILVENLSLVIISITISLL-----LGYISGSILKE-------LFISYNRISQLSRID 107
           G + + V  L+    S+T SLL     L  ++ S+  +       L  +   +  L+  D
Sbjct: 369 GTDTLEVAQLNRSFQSMTASLLEREQELSRLNTSLENQVRERTLALHQANQELENLAVRD 428

Query: 108 CLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+GL N   F  +L +Y         + +++  D D+FK++ND  GH  GD V+  L+ 
Sbjct: 429 PLTGLYNRRRFDEALQAYTARCRELGHRFALMIVDADHFKRVNDTHGHQTGDAVLRHLAG 488

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +     +  F+ R GGEEF          +E   +A  +R  + ++          H+T
Sbjct: 489 VITGCVRSTDFIARFGGEEFVVLMPEPRDREEGRFVAEKIRLAVGHTPFPGVG----HLT 544

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+A      EP++TI+ RAD+ALY AK+ GR+RV  
Sbjct: 545 VSIGLAFCHGGGEPLATILERADKALYQAKEEGRDRVCV 583


>gi|89899270|ref|YP_521741.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Rhodoferax ferrireducens T118]
 gi|89344007|gb|ABD68210.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 1037

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 10/184 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFK 140
             + E  ++  +I QL+  D L+GL N S               + ++L+I+F D+D+FK
Sbjct: 595 RDITEKKLAEAQIQQLAHFDQLTGLPNRSQLHDRFRYALSLAQRHGDQLAIMFLDLDHFK 654

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH VGD+++  +S +L         + RLGG+EF     G+ E +A+ +A  L 
Sbjct: 655 NINDTLGHSVGDQLLVDVSRRLKAALREEDSLSRLGGDEFILLLPGTDEAQASQVATKLL 714

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +      I     +  T+S GIA      +   T+   AD A+Y  K++ RN    F+
Sbjct: 715 AAVAQ-PCQIEQNELVS-TVSIGIALYPNDGQDFETLSKNADAAMYRVKQASRNDFRFFT 772

Query: 260 DIEN 263
               
Sbjct: 773 QEMQ 776


>gi|332529185|ref|ZP_08405149.1| Cyclic diguanylate phosphodiesterase domain protein [Hylemonella
           gracilis ATCC 19624]
 gi|332041408|gb|EGI77770.1| Cyclic diguanylate phosphodiesterase domain protein [Hylemonella
           gracilis ATCC 19624]
          Length = 623

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 60/184 (32%), Positives = 90/184 (48%), Gaps = 12/184 (6%)

Query: 83  GYISGS--ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIV 132
           GY+ GS   + E       + + +  D L+GL N   F+ SL S  E++         ++
Sbjct: 438 GYLVGSRIDITERKQLEAELREQASTDALTGLANRRHFMQSLESELERVRRRNTLRACVL 497

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK++ND +GH  GD ++   +D L          GRLGGEEFA    GS  ++A
Sbjct: 498 MLDLDHFKRVNDQYGHAAGDSLLRHFADLLRDELRGTDTAGRLGGEEFAVILPGSGMEDA 557

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSG 251
              A  L + +    +   +   IH T+S G+A            + RAD ALY AK++G
Sbjct: 558 RTWAQRLCEAVSARPLAWGARH-IHATVSVGVAILSPDDGAADAALSRADAALYRAKEAG 616

Query: 252 RNRV 255
           RNRV
Sbjct: 617 RNRV 620


>gi|254294350|ref|YP_003060373.1| response regulator receiver modulated diguanylate cyclase [Hirschia
           baltica ATCC 49814]
 gi|254042881|gb|ACT59676.1| response regulator receiver modulated diguanylate cyclase [Hirschia
           baltica ATCC 49814]
          Length = 459

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 60/191 (31%), Positives = 102/191 (53%), Gaps = 14/191 (7%)

Query: 81  LLGYISGSILKELFI--SYNRISQ---LSRIDCLSGLLNHSAFISSLGSY-------NEK 128
           LL  +   + K+ +I     R+ Q   L+  D L+GL N     + L  +          
Sbjct: 264 LLARVKTQVSKKRYIDSLRARLDQSMELAVTDQLTGLHNRRYMENQLEQFMKRANMGGGP 323

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +SI+  D+D+FK++ND  GH VGD+V+   SD+L+          R GGEEF      ++
Sbjct: 324 VSILLCDLDHFKKVNDGHGHDVGDEVLRQFSDRLMHNIRPSDIACRYGGEEFMVIMPDTT 383

Query: 189 EQEAAILANDLRKIIENSQINISSG-PSIHITISAGIA-ERCHKEPISTIIYRADQALYV 246
            Q A + A  +R+ ++ +  +I++G   + +T+S G +      + ++ +I RAD+ALY 
Sbjct: 384 IQMAQLTAERIREKVDGAPFSINNGLGRLDVTMSGGASVTFPPDDSVAQLIKRADEALYN 443

Query: 247 AKKSGRNRVVC 257
           AK++GRNR+VC
Sbjct: 444 AKENGRNRIVC 454


>gi|91791896|ref|YP_561547.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91713898|gb|ABE53824.1| diguanylate cyclase [Shewanella denitrificans OS217]
          Length = 321

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 110/221 (49%), Gaps = 16/221 (7%)

Query: 57  PFYGLEYILVENLSLVIISIT-----ISLLLGYISGSILKELFI--SYNRISQLSRIDCL 109
           P  G    + +N++L+ ++       I +++  ++   + +L +  +  ++  LS+ D L
Sbjct: 101 PITGRADFMYQNITLLPLASLTGIHHICIIVYDVTDIAVNKLQLKGANEQLELLSQTDGL 160

Query: 110 SGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           + L N   +   +    E+        S+V  DID FKQIND +GHP GDKVI  ++  L
Sbjct: 161 TQLHNRRHWQECMEHEFERFNRYADIASLVMIDIDNFKQINDKYGHPAGDKVIQHIAHLL 220

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                     GR GGEEF+A    ++  +A      LR  IE S+++      I +T+S 
Sbjct: 221 KNALRETDCAGRYGGEEFSAVLAKTNATDALQFTERLRTQIEASEVSYKD-QKIKVTVSL 279

Query: 223 GI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           GI A        S+ +  AD+ALY AK+ GRN+ V ++D +
Sbjct: 280 GINALHSGMGSSSSWLSGADKALYQAKQMGRNKSVIYTDEQ 320


>gi|53722992|ref|YP_111977.1| two component system fusin protein [Burkholderia pseudomallei
           K96243]
 gi|217422130|ref|ZP_03453633.1| diguanylate cyclase [Burkholderia pseudomallei 576]
 gi|254263987|ref|ZP_04954852.1| diguanylate cyclase [Burkholderia pseudomallei 1710a]
 gi|52213406|emb|CAH39449.1| putative two component system fusin protein [Burkholderia
           pseudomallei K96243]
 gi|217394361|gb|EEC34380.1| diguanylate cyclase [Burkholderia pseudomallei 576]
 gi|254214989|gb|EET04374.1| diguanylate cyclase [Burkholderia pseudomallei 1710a]
          Length = 507

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 11/204 (5%)

Query: 64  ILVENLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  + L ++++   I+++ G  +    L+    +  R+ +L+R D L+GL N  AF  +L
Sbjct: 299 IRAQRLGVLMLVFGIAIVGGTALLARELRWRRHAEMRLQRLARTDALTGLGNRRAFDENL 358

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGR 174
                        LS++F DID FK  ND++GH  GD V+  +   L   V      V R
Sbjct: 359 RSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAGDDVLREVGGCLAVNVRRAADDVAR 418

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEP 232
            GGEEF      +  + AA +A  +R+ + +  I     P   +T+S G+          
Sbjct: 419 YGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEHVRSPYARVTVSIGLVTSHEHIAHS 478

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
            +T++  AD ALY AK +GRNRV 
Sbjct: 479 DATLVKMADAALYQAKSTGRNRVC 502


>gi|296158639|ref|ZP_06841469.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. Ch1-1]
 gi|295891207|gb|EFG70995.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. Ch1-1]
          Length = 312

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 63/202 (31%), Positives = 101/202 (50%), Gaps = 11/202 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           L+    +V + +TIS +       + +E   +  ++ + +  D L+G+ N   F + L  
Sbjct: 113 LMREREVVAVCVTISDVTH--VSIVQREREEAVAKLQEYADRDGLTGIANRRFFETRLRD 170

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   +S++ FD+D+FK+IND FGH VGD V+  ++ ++  V       GR GG
Sbjct: 171 EYTRWQRYGGDMSMLLFDLDHFKKINDQFGHGVGDTVLRVMAQRVAEVVRAQDTFGRFGG 230

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTI 236
           EEFA     +   +A  +A  +R  I ++ + +  G S+ +T S G A  R        +
Sbjct: 231 EEFALLLPCTPLDDAMRVAEKIRCTIADTPVEV-QGTSVPVTASVGGACARVGVPSYDVL 289

Query: 237 IYRADQALYVAKKSGRNRVVCF 258
           I  AD ALY AK+ GRNR V F
Sbjct: 290 INEADAALYSAKRQGRNRSVAF 311


>gi|330888125|gb|EGH20786.1| sensory box protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 630

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 104/214 (48%), Gaps = 19/214 (8%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +G   +L  ++  + ++ T  LL+   +   + +L  +  ++  L+  D L+GL N +  
Sbjct: 245 HGAPLVLDISVEFITLNNTACLLM---NARDIGQLKTAQAQVQHLAYHDPLTGLPNRALL 301

Query: 119 ISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           +  L          N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         
Sbjct: 302 MDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 361

Query: 172 VGRLGGEEFAAAALGSS------EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
           V RLGG+EF     G         Q+  +LA++LR+++         G  + +T S GI 
Sbjct: 362 VARLGGDEFVVLICGLDGTRDEVTQQVRVLADNLRELLAEPMF--LDGHRLQVTPSIGIV 419

Query: 226 ERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
                    + ++ RAD ALY AK SGRN    F
Sbjct: 420 LIPDDGLAPADLLKRADIALYRAKDSGRNASQFF 453


>gi|148358754|ref|YP_001249961.1| sensory box protein [Legionella pneumophila str. Corby]
 gi|296106799|ref|YP_003618499.1| sensory box protein [Legionella pneumophila 2300/99 Alcoy]
 gi|148280527|gb|ABQ54615.1| sensory box protein [Legionella pneumophila str. Corby]
 gi|295648700|gb|ADG24547.1| sensory box protein [Legionella pneumophila 2300/99 Alcoy]
          Length = 768

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 116/285 (40%), Gaps = 30/285 (10%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63
            + D         +  E  S   +++   I +    A+   I +  +FY+ LT      Y
Sbjct: 205 QIPDMWLYDSYVSRPFELISVFIYLMLMIIVYPKIYASYPTILSDSVFYMSLTQVVLAIY 264

Query: 64  ILVENLSLVIISITISLLLGYISGSI-------------------LKELFISYNRISQLS 104
           I++ + +    +  I+  L  +   I                    K L I    +  ++
Sbjct: 265 IMLLSTTPYDSAFNIAYFLKVVVYFIPCTCFVINYVFSYSAVLEGQKNLKIKQEELKYMA 324

Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
             D L+ L N   F   L          N  L+++  D+D FK IND FGH  GD+++  
Sbjct: 325 SHDPLTNLFNRREFEDLLDKSIANAQRNNSSLALLLIDLDNFKAINDTFGHFHGDELLKQ 384

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSI 216
            +++LV++      + R+GG+EF   +L   S   A  LA  +    E       +G  I
Sbjct: 385 FANRLVLLVRKGDLLSRVGGDEFTLISLNIESPSSARHLAERILN--ELISPYTINGKLI 442

Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +T+S GI+           ++ +AD A+Y AK SG+N    +++
Sbjct: 443 TVTVSIGISIFPDDGNTTEDLLRKADLAMYKAKNSGKNTYQFYTE 487


>gi|116328538|ref|YP_798258.1| GGDEF domain-containing protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331267|ref|YP_800985.1| GGDEF domain-containing protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116121282|gb|ABJ79325.1| GGDEF domain receiver component of a two- component response
           regulator [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124956|gb|ABJ76227.1| GGDEF domain receiver component of a two- component response
           regulator [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 330

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 18/186 (9%)

Query: 91  KELFISYNRISQ-------LSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136
           KEL    +++ +       +SR D L+GL N   F   L +  ++       ++++  DI
Sbjct: 141 KELEKLTDQLQEVNSYLVAISRTDSLTGLYNRRYFYEILTTEWKRCWRTGAGIALIMLDI 200

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAIL 195
           D+FK  ND +GH  GD+ +  ++  +            R GGEEFA     ++E  A ++
Sbjct: 201 DHFKLYNDTYGHQGGDQCLKQVARAIRDCARRAGDVAARYGGEEFAVILPETNESNAVVV 260

Query: 196 ANDLRKIIENSQINISSGPSIHI-TISAGIA--ERCHKEPISTIIYRADQALYVAKKSGR 252
           + ++ + +E   I  S+  +  I T+S G+A      +  I+ +I RAD+ALY+AK+ GR
Sbjct: 261 SRNILENVEKMAIPHSASKTNSIVTVSIGMATLSPSPENSITELIERADKALYLAKEEGR 320

Query: 253 NRVVCF 258
           N +  +
Sbjct: 321 NCLRFY 326


>gi|307609922|emb|CBW99448.1| hypothetical protein LPW_12231 [Legionella pneumophila 130b]
          Length = 768

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 117/285 (41%), Gaps = 30/285 (10%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63
            + D         +  E  S   +++   I +    A+   I +  +FY+ LT      Y
Sbjct: 205 QIPDMWLYDSYVSRPFELISVFIYLMLMIIVYPKIYASYPTILSDSVFYMSLTQVVLAIY 264

Query: 64  ILVENLSLVIISITISLLLGYISGSI-------------------LKELFISYNRISQLS 104
           I++ + +    +  I+  L  +   I                    K L I    +  ++
Sbjct: 265 IMLLSTTPYDSAFNIAYFLKVVVYFIPCTCFVINYVFSYSAVLEGQKNLKIKQEELKYMA 324

Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
             D L+ L N   F   L          N  L+++  D+D FK IND FGH  GD+++  
Sbjct: 325 SHDPLTNLFNRREFEDLLDKSIANAQRNNSSLALLLIDLDNFKAINDTFGHFHGDELLKQ 384

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSI 216
            +++LV++      + R+GG+EF   +L   S   A  LA  +    E +     +G  I
Sbjct: 385 FANRLVLLVRKGDLLSRVGGDEFTLISLNIESPSSARHLAERILN--ELNSPYTINGKLI 442

Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +T+S GI+           ++ +AD A+Y AK SG+N    +++
Sbjct: 443 TVTVSIGISIFPDDGNTTEDLLRKADLAMYKAKNSGKNTYQFYTE 487


>gi|82703159|ref|YP_412725.1| diguanylate cyclase [Nitrosospira multiformis ATCC 25196]
 gi|82411224|gb|ABB75333.1| diguanylate cyclase with PAS/PAC sensor [Nitrosospira multiformis
           ATCC 25196]
          Length = 432

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 11/179 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
              + +   S  RI  L+  D L+GL N +         I +   Y+ +L+++F D+D+F
Sbjct: 254 ARDITKRKESQKRIEYLAHYDPLTGLPNRALLADRMKTAIENAKRYSFQLAVLFVDLDHF 313

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILAND 198
           K IND+ GH +GDK++  +++++         V RLGG+EF       +   +AA +A  
Sbjct: 314 KLINDSLGHEIGDKLLKIVAERMRSRLRQTDTVSRLGGDEFIILLSRINAASDAACVAEK 373

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
           +   +  SQ        + +  S GI+      +  S+++  AD+A+Y AK  GRNR  
Sbjct: 374 IIAAL--SQPYHLEQHELGLGASIGISIYPDSGKDTSSLLRSADEAMYSAKGQGRNRYH 430


>gi|23501935|ref|NP_698062.1| GGDEF domain-containing protein [Brucella suis 1330]
 gi|161619007|ref|YP_001592894.1| diguanylate cyclase [Brucella canis ATCC 23365]
 gi|254704346|ref|ZP_05166174.1| diguanylate cyclase [Brucella suis bv. 3 str. 686]
 gi|23347879|gb|AAN29977.1| GGDEF domain protein [Brucella suis 1330]
 gi|161335818|gb|ABX62123.1| diguanylate cyclase (GGDEF) domain [Brucella canis ATCC 23365]
          Length = 264

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 119/234 (50%), Gaps = 14/234 (5%)

Query: 41  TVIFIANIFLFYIG---LTPFYGLEY--ILVENLSLVIISITISLLLGYISGS--ILKE- 92
             +   ++ LF +G   +T F+  E   ++  +LSL  + + I     +I      LKE 
Sbjct: 8   AALLTLSVVLFCVGATSITAFWSGETPGLMAISLSLGFLLVMIFPFSAFIFLRYDKLKEA 67

Query: 93  ---LFISYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNF 146
              L  S+  +   +RID ++GLLN  A   ++    S  E  +++  D D+FK IND+F
Sbjct: 68  YAQLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSF 127

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+
Sbjct: 128 GHGVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENT 187

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV   +
Sbjct: 188 PFHTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVVFDEE 241


>gi|320162522|ref|YP_004175747.1| putative signaling protein [Anaerolinea thermophila UNI-1]
 gi|319996376|dbj|BAJ65147.1| putative signaling protein [Anaerolinea thermophila UNI-1]
          Length = 782

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 61/237 (25%), Positives = 104/237 (43%), Gaps = 23/237 (9%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLT-PFYGLEYILVENLSLVIISITISLLLGYISGS 88
           +  + F+        +  IFLF   L   F   E  L+E     +I   +SL L      
Sbjct: 548 FEGVLFTALYVKGEVLGAIFLFTRDLARKFTAEEKELLE-----VIGAQMSLALA----- 597

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
               L     +I  L+ +D L+G+ N   F       +     Y    +++  D+D+FK+
Sbjct: 598 --NALSFREQQI--LAELDSLTGIYNRRKFFEIAAAELERSARYLRPCALLMMDLDHFKE 653

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            ND FGH  GD+++A L+            + R GG+EF      +++  A  +A  L +
Sbjct: 654 YNDTFGHQAGDQLLAELAQTFRRSLREFDTLARYGGDEFILLLPETTQDSALRVAERLLR 713

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +      I    +I +++S GIA    H   + +++  AD+ALY AK++GR+R   
Sbjct: 714 RVREKNAGIPEPHAIPLSLSIGIACFPQHARDLGSLLKCADEALYRAKQNGRDRYEI 770


>gi|251766786|ref|ZP_04819808.1| diguanylate cyclase [Burkholderia mallei PRL-20]
 gi|243064671|gb|EES46857.1| diguanylate cyclase [Burkholderia mallei PRL-20]
          Length = 507

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 11/204 (5%)

Query: 64  ILVENLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  + L ++++   I+++ G  +    L+    +  R+ +L+R D L+GL N  AF  +L
Sbjct: 299 IRAQRLGVLMLVFGIAIVGGTALLARELRWRRHAEMRLQRLARTDALTGLGNRRAFDENL 358

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGR 174
                        LS++F DID FK  ND++GH  GD V+  +   L   V      V R
Sbjct: 359 RSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAGDDVLREVGGCLAVNVRRAADDVAR 418

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEP 232
            GGEEF      +  + AA +A  +R+ + +  I     P   +T+S G+          
Sbjct: 419 YGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEHVRSPYARVTVSIGLVTSHEHIAHS 478

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
            +T++  AD ALY AK +GRNRV 
Sbjct: 479 DATLVKMADAALYQAKSTGRNRVC 502


>gi|158336701|ref|YP_001517875.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158306942|gb|ABW28559.1| diguanylate cyclase (GGDEF domain), putative [Acaryochloris marina
           MBIC11017]
          Length = 368

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 13/183 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
            + K+L  +  R++ L+ +D L+ L N  AF  +L     +       L+++  DIDYFK
Sbjct: 169 QLHKQLEEANKRLTYLASVDELTQLPNRRAFTEALNREWRRMAREKSSLALIMIDIDYFK 228

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GHPVGD  +  ++  +      P     R GGEEFA     ++   A  +A ++
Sbjct: 229 VYNDTYGHPVGDSCLFQVARVIHTCVRRPADLPSRYGGEEFAVILPNTTLSGAIHVAENM 288

Query: 200 RKIIENSQINISSGPSI-HITISAGIAERCHK----EPISTIIYRADQALYVAKKSGRNR 254
           R  ++   I   +  +  ++++S G+A         E  + ++  ADQALY AK  GRNR
Sbjct: 289 RLSVQRLMIPHKNSANGPYVSLSLGVASVIPDIQEMESETPLLLAADQALYKAKAEGRNR 348

Query: 255 VVC 257
           V  
Sbjct: 349 VCV 351


>gi|108761071|ref|YP_633928.1| response regulator/GGDEF domain-containing protein [Myxococcus
           xanthus DK 1622]
 gi|108464951|gb|ABF90136.1| response regulator/GGDEF domain protein [Myxococcus xanthus DK
           1622]
          Length = 347

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 83/179 (46%), Gaps = 13/179 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           KEL      +  L+R D L+GL N  AF   L         Y   LS+V  DID+FK+IN
Sbjct: 165 KELAARREELLALTRTDALTGLSNRRAFEERLNDEFARSRRYGAPLSLVMLDIDHFKRIN 224

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+FGHP GD V+  ++            + R GGEEF A    +   +A  +   +R  I
Sbjct: 225 DSFGHPFGDHVLKAVAQTARARLREVDLLARYGGEEFIALLPETGPADALRVCERVRDAI 284

Query: 204 ENSQINISSG----PSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256
              ++    G      + +T S G+A     +      ++  AD +LY AK +GRNRV 
Sbjct: 285 AALELEHVGGSGKPQCVRLTASLGVATVPSGDLPSAEALLRAADASLYAAKGAGRNRVH 343


>gi|54297125|ref|YP_123494.1| hypothetical protein lpp1170 [Legionella pneumophila str. Paris]
 gi|53750910|emb|CAH12321.1| hypothetical protein lpp1170 [Legionella pneumophila str. Paris]
          Length = 768

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 117/285 (41%), Gaps = 30/285 (10%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63
            + D         +  E  S   +++   I +    A+   I +  +FY+ LT      Y
Sbjct: 205 QIPDMWLYDSYVSRPFELISVFIYLMLMIIVYPKIYASYPTILSDSVFYMSLTQVVLAIY 264

Query: 64  ILVENLSLVIISITISLLLGYISGSI-------------------LKELFISYNRISQLS 104
           I++ + +    +  I+  L  +   I                    K L I    +  ++
Sbjct: 265 IMLLSTTPYDSAFNIAYFLKVVVYFIPCTCFVINYVFSYSAVLEGQKNLKIKQEELKYMA 324

Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
             D L+ L N   F   L          N  L+++  D+D FK IND FGH  GD+++  
Sbjct: 325 SHDPLTNLFNRREFEDLLDKSIANAQRNNSSLALLLIDLDNFKAINDTFGHFHGDELLKQ 384

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSI 216
            +++LV++      + R+GG+EF   +L   S   A  LA  +    E +     +G  I
Sbjct: 385 FANRLVLLVRKGDLLSRVGGDEFTLISLNIESPSSARHLAERILN--ELNSPYTINGKLI 442

Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +T+S GI+           ++ +AD A+Y AK SG+N    +++
Sbjct: 443 TVTVSIGISIFPDDGNTTEDLLRKADLAMYKAKNSGKNTYQFYTE 487


>gi|114049240|ref|YP_739790.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113890682|gb|ABI44733.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 485

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 64/197 (32%), Positives = 98/197 (49%), Gaps = 14/197 (7%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE 127
           NL L ++     LL+  ++      L     ++  ++  D L+G  N   F        E
Sbjct: 294 NLGLSLLVTIGVLLISNMT------LGRYQRKLEIMASTDKLTGAANRQVFEEYFHQALE 347

Query: 128 K-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           K       +SI+  DID+FK++ND++GH +GD V+  +++ L         + R GGEEF
Sbjct: 348 KAKLSKQAISILLVDIDHFKKVNDSYGHSIGDLVLKTVTNLLRSQLKEQDVLCRWGGEEF 407

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                      AA LA   R +I   ++ + +G  I IT+S G+AE    EP   +I RA
Sbjct: 408 IVLLPEMDLSHAAELAEHFRDLIFQRELKV-NGVHIAITVSIGVAEYQKLEPAEDLIKRA 466

Query: 241 DQALYVAKKSGRNRVVC 257
           D ALY AK++GRN+VV 
Sbjct: 467 DLALYQAKEAGRNQVVL 483


>gi|114562263|ref|YP_749776.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114333556|gb|ABI70938.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 357

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 81/281 (28%), Positives = 133/281 (47%), Gaps = 42/281 (14%)

Query: 15  HEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY--GLEYILVENLS-L 71
           ++ NL SF    + +Y  +F+ +F   V     +++F +     Y  GL Y LV  L  L
Sbjct: 69  NKLNLSSFI-IIYSLYILMFYLVFTGGVEQTGPLWIFIVAPVSVYVLGLSYGLVNLLFFL 127

Query: 72  VIISIT------------------ISLLLGYISGSILKELF-----ISYN-------RIS 101
            II+I                   + L+L +++ + L  L+     +SYN       +  
Sbjct: 128 SIIAIIMFSPIEMPQYATYSTEFKVRLILSFLTTTFLSALYEYSRMLSYNSALKLGKKYQ 187

Query: 102 QLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           QL+  D L+ L N    +       S +   NE LS++  D+D+FK +ND +GH  GD V
Sbjct: 188 QLALSDPLTTLANRRNALTILQQEKSRISRNNEPLSVLLCDLDHFKMVNDKYGHNCGDMV 247

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  LS            V R GGEEF      +S ++A+++A  +R  + + +++     
Sbjct: 248 LTELSQVFKQSVRQQDCVARWGGEEFLFILPQTSAEQASVIAEKIRTNVHHHKVHFLK-H 306

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I +TIS GI++    + I  +I  AD+ LY AKK+GRN+V
Sbjct: 307 EISLTISIGISQLTDDQNIDELINNADRNLYQAKKNGRNQV 347


>gi|204926950|ref|ZP_03218152.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204323615|gb|EDZ08810.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 308

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 71/275 (25%), Positives = 123/275 (44%), Gaps = 22/275 (8%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPFYGLEYI 64
           F  IW  H      +   + F  +  S+   +FI ++ F ANI  F +  L P     ++
Sbjct: 32  FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 91

Query: 65  LVENLSLVIISITISLLLGYISGSILKE------------LFISYNRISQLSRIDCLSGL 112
                 L I+ + +  ++G     ++++            L      ++ LS +D L+GL
Sbjct: 92  NGNEQGLRILYLLVLPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 151

Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +     S    ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 152 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 211

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      +  Q+A   A  +R+ + + +I      S+  ++T+S GIA 
Sbjct: 212 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 271

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                 I   I +AD+ALY AK  GRN ++   D+
Sbjct: 272 LT-DRNIGNAIEKADKALYEAKHLGRNHILVSDDM 305


>gi|119469554|ref|ZP_01612458.1| hypothetical protein ATW7_06843 [Alteromonadales bacterium TW-7]
 gi|119447089|gb|EAW28359.1| hypothetical protein ATW7_06843 [Alteromonadales bacterium TW-7]
          Length = 323

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 77/277 (27%), Positives = 125/277 (45%), Gaps = 24/277 (8%)

Query: 6   KDFLSIW-LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI 64
           KD   ++    EK   S S   F++    F        IF       +    P  G    
Sbjct: 54  KDLFDLFPAIDEKWFRSKSESVFVLKNRSFTIWEQQPYIF------RFKNYRPITGKAEY 107

Query: 65  LVENLSLVIISIT------ISLLLGYISGSIL--KELFISYNRISQLSRIDCLSGLLNHS 116
           + +N + + ++        I ++L  ++   +  KEL     R+ Q+S+ D L+ L N  
Sbjct: 108 MYQNATFIPLTNIRAEVSHICIILYDVTDIAVNKKELEDLNARLEQVSQTDSLTQLYNRG 167

Query: 117 AFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            + S+L              +++ FDID FK +ND +GH  GD+ +  LS  L       
Sbjct: 168 HWESTLKQEFLRTKRNGGSSALLMFDIDRFKVVNDEYGHTCGDEALRHLSKLLKTTLRET 227

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
              GR GGEEF    L + E+ A I A  LR +IE S +       + +T+S G A   +
Sbjct: 228 DIAGRYGGEEFVVTLLDTDEKGAEIFAERLRVLIEQSPVMYKQ-LEVKVTVSIGFACFSN 286

Query: 230 K-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           + +     I  AD+A+Y +KK+GRN+V  ++DI+N+ 
Sbjct: 287 EFKDHERWIEAADKAMYQSKKNGRNKVTAYADIKNDA 323


>gi|85711692|ref|ZP_01042749.1| Signaling protein with a ligand-binding sensor domain and GGDEF
           domain [Idiomarina baltica OS145]
 gi|85694552|gb|EAQ32493.1| Signaling protein with a ligand-binding sensor domain and GGDEF
           domain [Idiomarina baltica OS145]
          Length = 999

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/217 (29%), Positives = 107/217 (49%), Gaps = 12/217 (5%)

Query: 49  FLFYIGLTPFYGLEYILVENLSL-VIISITISLLLGYISGSILK-ELFISYN--RISQLS 104
           F F     P+    + L    +L +  +I +   + +++    + EL ++     +  L+
Sbjct: 780 FAFTRSEHPWQQSWFWLSIIFALGLAATILVRARIRFLNNQRAQLELMVAEKTKELKGLA 839

Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           R D L+ L N  AF   L           + LS+   D+D+FK IND F H +GD+V+  
Sbjct: 840 RQDSLTQLGNRRAFDEQLQYEFKRCERSEQPLSLAIIDVDHFKSINDRFLHVIGDQVLIE 899

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           LS  L  +     ++ R GGEEFA     ++ +EA   A  +R+ IE++     +   + 
Sbjct: 900 LSALLSNMLRDIDYIARWGGEEFALLMPETTAKEALQAAERIRQRIEDTSYQHLAD-ELA 958

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +T+S G+A   H    S ++  AD+ALY AK+SGRNR
Sbjct: 959 VTVSIGVASSEHYPNHSALLVAADKALYKAKQSGRNR 995


>gi|264677962|ref|YP_003277869.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           CNB-2]
 gi|262208475|gb|ACY32573.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           CNB-2]
          Length = 384

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/262 (24%), Positives = 109/262 (41%), Gaps = 25/262 (9%)

Query: 21  SFSPHTFMIYFSI--FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITI 78
           +F     ++ FS   F +    +     +  L  I L  ++    + +   +L+   +T+
Sbjct: 122 AFQALVMLLVFSTDGFLAPRRTSFWMTWSCTLIAIALAVYWVGPQMRMTTDTLIGQFLTV 181

Query: 79  SLLLGYISG-SIL---------------KELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
            ++LG +   S+L               ++L ++  +I  L R D L+GL N    +  L
Sbjct: 182 GVMLGAVVRCSVLVTYFRGMQYRLSASNEKLALALKQIENLVRNDDLTGLANRRGVMDRL 241

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     +    I   DID+FKQ+ND +GH  GD+V+      L          GR 
Sbjct: 242 QQCIHAAQRRDAPFCIALLDIDFFKQVNDRYGHEGGDQVLRAFGQLLSSQIRATDCAGRY 301

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           GGEEF      +   +A +L   +R+  E           + +T + G+ +    E    
Sbjct: 302 GGEEFLLVLCDTPLAQAGVLLERIRESTEALPWTQLVHKDLRVTCTLGVTQYRQGETAEA 361

Query: 236 IIYRADQALYVAKKSGRNRVVC 257
           +I RAD A+Y  K +GRNRVV 
Sbjct: 362 LISRADAAMYRGKAAGRNRVVL 383


>gi|119899670|ref|YP_934883.1| signaling protein [Azoarcus sp. BH72]
 gi|119672083|emb|CAL95997.1| hypothetical signaling protein [Azoarcus sp. BH72]
          Length = 952

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 93/182 (51%), Gaps = 10/182 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           + + +L  + +R+  L+  D L+ L N    +S L            +++++F D+D FK
Sbjct: 509 TDISKLKQTEDRLDYLAHHDPLTDLPNRLLVLSRLEHALDGAQRRGCRVAVMFLDLDRFK 568

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            +ND+ GH  GD+++  ++ +L         +GRLGG+EF        +  +AA++A +L
Sbjct: 569 TVNDSLGHAAGDELLRAVAARLRGALREEDTLGRLGGDEFMVLLEHVEAPADAAVVAKNL 628

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            +++  +   +S+G  + I  S GI+      +   T++  AD A+Y AK  GRN    +
Sbjct: 629 VEVLA-APFALSNGHEVFIRASIGISFYPDDGDDFMTLVRNADAAMYRAKAQGRNTYGFY 687

Query: 259 SD 260
           ++
Sbjct: 688 TE 689


>gi|126174323|ref|YP_001050472.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|125997528|gb|ABN61603.1| diguanylate cyclase [Shewanella baltica OS155]
          Length = 342

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 10/180 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
           G  ++ L      +S  +  D L+ L N  A+  S+         +  + S++  DID F
Sbjct: 162 GQEVQNLKSEMENLSLAAMTDQLTSLHNRRAYELSIQDQIYLSQDHQTRCSLLLIDIDNF 221

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND +GH  GDKV+A+++  L        FV R GGEEF      +   +A  +A +L
Sbjct: 222 KAFNDTYGHLTGDKVLAYVALALKQCVRGDDFVARYGGEEFVVVLPNTHFHDALQVAENL 281

Query: 200 RKIIENSQINISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R+ I   ++ I     +    IT+S G+A     +   T+  RAD+ALY AK  GRN V 
Sbjct: 282 RERISERRLTIGKDKKLSLGAITVSIGLASLQQGDDAETLFGRADKALYQAKAEGRNCVR 341


>gi|253995502|ref|YP_003047566.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Methylotenera
           mobilis JLW8]
 gi|253982181|gb|ACT47039.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera mobilis JLW8]
          Length = 681

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 89/188 (47%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFK 140
             + E   +  ++  L+  D L+GL N   F  SL           + ++++F D+D FK
Sbjct: 236 RDISESKRTQQQLHFLAHYDTLTGLPNRLLFNESLHQAQTHANRTSDTIAVMFIDLDRFK 295

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
            IND  GH +GDK++  + +++ +       V R+GG+EFA   +   E+ +AA++A  +
Sbjct: 296 NINDTLGHGIGDKLLQQVGNRISLCIRESDTVARMGGDEFAVVLVNVREESDAAVVAEKI 355

Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +      +     + +  S GI   R  ++    ++ +AD A+Y AK+ GRN    +
Sbjct: 356 IDALRL--PFMVGEHEVFVGASIGITFYRPGQDDRDVLLEKADVAMYHAKERGRNNFQFY 413

Query: 259 SDIENNTC 266
           S   +   
Sbjct: 414 SSEMDAVA 421


>gi|94270288|ref|ZP_01291701.1| PAS:GGDEF:EAL [delta proteobacterium MLMS-1]
 gi|93450865|gb|EAT01886.1| PAS:GGDEF:EAL [delta proteobacterium MLMS-1]
          Length = 941

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 16/190 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           + + +       I +L+  D L+ L N   F   L           +  +++F D+D FK
Sbjct: 485 TDITDKKNREQEIHRLAFYDPLTRLPNRRLFFDRLEQAFSASARSGQHGAVLFLDLDNFK 544

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ------EAAI 194
            +ND  GH VGD ++   +++L V       + R GG+EF       S +      +A  
Sbjct: 545 TLNDTRGHDVGDLLLTMAAERLQVAVRANDTISRQGGDEFMVLLNNLSPERHAAISQAGR 604

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRN 253
           +A  +R  ++  Q     G   HI +S G++    H  P   +  RAD A+Y AK +GRN
Sbjct: 605 VAEKIRAALD--QPFDLDGYEHHIGVSIGLSLFLGHDTPADELFKRADAAMYQAKHAGRN 662

Query: 254 RVVCFSDIEN 263
           +V  F     
Sbjct: 663 QVRFFDPEMQ 672


>gi|83312079|ref|YP_422343.1| hypothetical protein amb2980 [Magnetospirillum magneticum AMB-1]
 gi|82946920|dbj|BAE51784.1| Hypothetical 918 kDa protein Y4LL [Magnetospirillum magneticum
           AMB-1]
          Length = 830

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 12/213 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +  E L++ ++      L  Y++  S +        R++  +  D L+ L N + F   L
Sbjct: 352 MFAEWLNISVVRNERGELTNYVAVFSDITSRKQDEERLNYQANHDPLTRLPNRTLFQERL 411

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                +       ++++F D+D+FKQ+ND  GH  GD ++  ++++L         V RL
Sbjct: 412 TRALTRAHRNQAIVALLFIDLDFFKQVNDTLGHLAGDILLQQVAERLTSCVRQGDTVARL 471

Query: 176 GGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
            G+EF       SE ++ A++A+ +  ++   +     G    I+ S G+A         
Sbjct: 472 AGDEFTVILEEISEPRDGAVVAHKILSLLA--EPFDLQGHEARISSSIGVALYPSDGGDA 529

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            T+I  AD A+Y AK  GRN     S+  N   
Sbjct: 530 QTLIKLADAAMYRAKHQGRNACRFHSESINAQA 562


>gi|212636403|ref|YP_002312928.1| PAS:GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212557887|gb|ACJ30341.1| PAS:GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 1032

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 97/226 (42%), Gaps = 19/226 (8%)

Query: 58  FYGLEYILVENLSLVIISITISLLL--------GYISGSILKELFISYNRISQLSRIDCL 109
           + G  ++  +N   +++ +TI+ L              S + +   +   I + +  D L
Sbjct: 527 WQGEMWLRRKNGEELVVWLTINTLFDSEAQTERRVALFSDITDKKQAEQIIWKQANYDPL 586

Query: 110 SGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GL N    +  LG          +  +++F D+DYFK++ND  GH +GD ++   + +L
Sbjct: 587 TGLPNRRMLLDYLGSEILKSDRREKHFALMFLDLDYFKEVNDTLGHDMGDLLLTEAAKRL 646

Query: 163 VVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                    V RLGG+EF     G +  +    +A ++   +     ++    S +I+ S
Sbjct: 647 KSCIRDSDVVARLGGDEFTVVLSGITDIKGVDKVAQNILNRLAE-PFSLGEETS-YISAS 704

Query: 222 AGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            GI         I  ++  ADQA+Y AK  GRNR   F+       
Sbjct: 705 IGITLYPDDASSIEGLLKHADQAMYAAKDQGRNRFHYFTPSMQRNA 750


>gi|114778330|ref|ZP_01453189.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain-like [Mariprofundus ferrooxydans PV-1]
 gi|114551432|gb|EAU53988.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain-like [Mariprofundus ferrooxydans PV-1]
          Length = 615

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
             + +       +   +R D L+GL N   F             +  + S++  D+D+FK
Sbjct: 433 RDITDRKELERELESQARTDVLTGLNNRRYFFELAELELARAKRHGNQFSLLMLDVDHFK 492

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
             ND++GH +GD+V+  LS+  +         GR+GGEEFA     +    A  +A  LR
Sbjct: 493 LFNDSYGHHIGDRVLQKLSEVCMHTLREIDLSGRIGGEEFAIMLPETRGDRAMEVAERLR 552

Query: 201 KIIENSQINISSGPS-IHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I  + + +    + +H T+S G+         +  ++ RAD ALY AK +GRN+V 
Sbjct: 553 LAIAGAPVLLEQQSTFVHFTVSIGVTSLVAAGRQVDDLLKRADDALYAAKNAGRNQVC 610


>gi|332994531|gb|AEF04586.1| GGDEF domain-containing protein [Alteromonas sp. SN2]
          Length = 319

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 86/173 (49%), Gaps = 9/173 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
           +      +   SRID L+GL N   +              ++  + +  DID+FK++ND 
Sbjct: 142 MERLNEELKTASRIDGLTGLFNRRYWQERFEQSYKLAKRQDKASTAMMLDIDHFKKVNDT 201

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GDKVI  LS  +          GR GGEEFA     SS ++A I+A  +R++ E 
Sbjct: 202 YGHQAGDKVIQMLSALIKRCVRETDLAGRYGGEEFAVILTDSSVEKAVIVAERIRRLAER 261

Query: 206 SQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +    G  I  T+S G+AE   H +     + +ADQALY AK+SGRN+   
Sbjct: 262 LVVEH-DGEEITFTVSLGLAEFDPHSKSSMAWLEKADQALYEAKESGRNKYCI 313


>gi|330952919|gb|EGH53179.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 743

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 15/192 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + E   S +RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 465 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQAWVVLMFLDLDRFK 524

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-----L 195
            IND+ GH  GD+++  ++ +L+        V R+GG+EF         +EAA+     +
Sbjct: 525 PINDSLGHAAGDRMLQEMATRLLACVSVDDTVARMGGDEFTLLLEPDETREAALSRAIHV 584

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  +   +      +  G    +T S GIA      + +S ++  AD A+Y AK+ G+N 
Sbjct: 585 AERILTSL--ITPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNN 642

Query: 255 VVCFSDIENNTC 266
              +    N T 
Sbjct: 643 FQFYQADMNATA 654


>gi|330808552|ref|YP_004353014.1| diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376660|gb|AEA68010.1| Putative diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 523

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 63/208 (30%), Positives = 95/208 (45%), Gaps = 18/208 (8%)

Query: 70  SLVIISITISL-LLGYI-------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           SL++  + + + L G++       S  I  +L  +   +  ++  D L+GL N   F  +
Sbjct: 303 SLIVGLVVLGICLFGWVFVRQVRNSERIEADLRKAQQALELIATHDSLTGLANRRLFERA 362

Query: 122 L-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVG 173
           L             LS++  DID+FK+ ND +GH  GD  +A ++  L            
Sbjct: 363 LDIEFGRGARQRSPLSLIMLDIDFFKRYNDAYGHVAGDHCLAEVAKVLKDCCHRKADLAV 422

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--E 231
           R GGEEFA     ++   A  LA  +R+ + +  I  S  P+ H+T+S G         +
Sbjct: 423 RYGGEEFAVLLPDTNLSGAMALAEQIRRSVIDKHITHSGSPTGHLTVSLGCYAFVPSGLD 482

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
            I   I RAD ALY AK  GRNRV   S
Sbjct: 483 SIEVFIQRADAALYQAKHGGRNRVAVLS 510


>gi|313901797|ref|ZP_07835221.1| diguanylate cyclase with GAF sensor [Thermaerobacter subterraneus
           DSM 13965]
 gi|313467948|gb|EFR63438.1| diguanylate cyclase with GAF sensor [Thermaerobacter subterraneus
           DSM 13965]
          Length = 640

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 11/185 (5%)

Query: 81  LLGYISGSILKELFISY--NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSI 131
           LL  I+  +   L  ++   R+ Q +  D L+GL N S  +  L         Y   LS+
Sbjct: 372 LLQAIADEVAVALERAWLMERVEQQAITDPLTGLYNRSCLVQRLREEGERAARYGRPLSL 431

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +F D+D  K +ND FGH  GD+V+ +++  L     +  +  R GG+EF      +  + 
Sbjct: 432 LFIDLDDLKLVNDRFGHEAGDQVLVWVARVLKEACRSVDYAARYGGDEFVVVLPETGPEG 491

Query: 192 AAILANDL-RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
           A  +A  + ++++E       +   + +  S GIA    H    + ++  ADQA+Y AK+
Sbjct: 492 ARAVAARIQQRLLEEPGPPGWAWGRLGVGASIGIAAYPAHARDWTDLLRLADQAMYGAKR 551

Query: 250 SGRNR 254
             + R
Sbjct: 552 RAKAR 556


>gi|127513706|ref|YP_001094903.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella loihica PV-4]
 gi|126639001|gb|ABO24644.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella loihica PV-4]
          Length = 1010

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
           S + E   + + I + +  D L+GL N    +         +   +   +++F D+D+FK
Sbjct: 565 SDITEKKEAEHIIWKQANYDPLTGLPNRRMLLEYLNTEILRIDRNHSHFALMFLDLDFFK 624

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
           ++ND  GH +GD ++   + +L         V RLGG+EF     G         +A  +
Sbjct: 625 EVNDTLGHDMGDLLLQETAKRLKGCIRESDVVARLGGDEFTVVLSGIDSPSGVERVAQSI 684

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            + I   +       + +I+ S GI         I  ++  ADQA+Y AK+ GRNR   F
Sbjct: 685 LERIA--EPYSLGDETAYISASIGITIYPDDATSIEGLLKHADQAMYAAKEQGRNRFHYF 742

Query: 259 SDIENNTC 266
           +       
Sbjct: 743 TPSMQEYA 750


>gi|289207789|ref|YP_003459855.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
 gi|288943420|gb|ADC71119.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
          Length = 291

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 108/247 (43%), Gaps = 33/247 (13%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTP-----FYGLEYILVENLSLVIISITISL-LLGYISG 87
           +  +F+   IF     L Y+G  P     ++ +  +LV  + L+  S   S+ LL Y S 
Sbjct: 40  WLLMFVLIPIFT----LGYLGFIPLNWGLYHSIPDLLVPIIFLLGGSFVCSVVLLTYSSV 95

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
             ++ +     R+   S  D L+GL N       L         Y + LS+V  DID FK
Sbjct: 96  ESIRRIT----RLEHESITDPLTGLFNRRHMDRRLDEEVARSRRYGQPLSVVMLDIDEFK 151

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH  GD ++  ++ +L           R GGEEF   A  + +  A  LA  LR
Sbjct: 152 GINDRLGHLAGDYILESIAQRLRQNLRRVDLAARFGGEEFVVIAPHTDQDAALQLAEKLR 211

Query: 201 KIIENSQINISSGP--------SIHITISAGIA----ERCHKEPISTIIYRADQALYVAK 248
             I  + I +             +++T+S G+A    E   ++    ++ RAD ALY AK
Sbjct: 212 SEIAQTPIILKGHEHVPPCAPDELYVTVSVGVASLNIEPDSRDNADFLLQRADDALYRAK 271

Query: 249 KSGRNRV 255
             GRNR 
Sbjct: 272 AGGRNRC 278


>gi|302877367|ref|YP_003845931.1| response regulator receiver modulated diguanylate cyclase
           [Gallionella capsiferriformans ES-2]
 gi|302580156|gb|ADL54167.1| response regulator receiver modulated diguanylate cyclase
           [Gallionella capsiferriformans ES-2]
          Length = 632

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 8/173 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL +S  R+  L+  D L+GL N    +  L             +  +  DID+FK +ND
Sbjct: 460 ELALSNKRLQTLALTDALTGLPNRRYGMERLEQEWAIAMRAGRPVCCMMVDIDHFKAVND 519

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH +GD+ +  ++  L         V RLGGEEF      S  +     A  LR+ + 
Sbjct: 520 NYGHQLGDEALKLVALSLQQAARKQDVVCRLGGEEFMVICPDSDLRAGYTYAERLRQHVA 579

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              I  + G S+ +T+S G+ +  + +    ++++AD  LY AK SGRN  V 
Sbjct: 580 AQPIQ-AQGKSLQLTVSIGLTDNANLDSTEAMLHQADTRLYAAKASGRNCTVV 631


>gi|302878922|ref|YP_003847486.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
           capsiferriformans ES-2]
 gi|302581711|gb|ADL55722.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
           capsiferriformans ES-2]
          Length = 564

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 9/182 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFK 140
           S + E       I   +  D L+ L N   F   L    +        L++ F D+DYFK
Sbjct: 380 SDITEKKQKDELIHWQANYDPLTNLPNRRLFQDRLNQAIKLAHRTELPLALFFIDLDYFK 439

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           +IND  GH  GD ++  ++ ++         V RLGG+EF       S   +   +A ++
Sbjct: 440 EINDTLGHANGDVLLMEVARRISSCVREADTVARLGGDEFTVILPELSDATQILRVAKNI 499

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
              +      ++     H++ S GIA           +I  AD+A+Y AK  GRNR V F
Sbjct: 500 VDKLSQPFFFVNDETGYHVSASIGIANYPQDAMDTKGLIKCADKAMYAAKSEGRNRFVYF 559

Query: 259 SD 260
           S+
Sbjct: 560 SN 561


>gi|218674208|ref|ZP_03523877.1| putative sensory box GGDEF family protein [Rhizobium etli GR56]
          Length = 432

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 13/209 (6%)

Query: 61  LEYILVENLSLVIISITISLLLGY---ISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           L  IL     L+I++  + +L      +   + ++       +   ++ D L+GL N   
Sbjct: 170 LTRILALCAGLLILATLVMVLAARGLRLIDRLTQDREALVAELRNAAQTDLLTGLYNRRG 229

Query: 118 F-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           F       ++     +  +S+V FD+D+FK+IND  GH  GD V+  ++      F +  
Sbjct: 230 FEVAASALLTQAEHGSRWISVVLFDLDHFKKINDVNGHDAGDAVLRHVAGIARENFRSFD 289

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            + R GGEEF A    S+  +AAI+A  +R  IE ++I + SG  + +T S G A R + 
Sbjct: 290 LLVRHGGEEFLALLPDSTPDDAAIVAERVRLAIEMAEIPLPSGELLKVTASFGCAGRAND 349

Query: 231 ---EPISTIIYRADQALYVAKKSGRNRVV 256
                   ++ RAD ALY AK SGRN VV
Sbjct: 350 GASRNFEDLVKRADLALYAAKASGRNCVV 378


>gi|90022687|ref|YP_528514.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Saccharophagus degradans 2-40]
 gi|89952287|gb|ABD82302.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Saccharophagus degradans 2-40]
          Length = 878

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 12/183 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQINDNF 146
              + +++ +L+  D L+GL N + F   L         +  L+++  D+D FK +ND  
Sbjct: 427 RHEAEDKLRELAEHDPLTGLANRAMFQHRLEHGLSRTHRHGSLALLCLDLDGFKNVNDTL 486

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN 205
           GH  GD+++  ++ +L         V R+GG+EF     G    Q AA ++  +   +E 
Sbjct: 487 GHDSGDELLIEVAKRLTKCVREEDTVARVGGDEFMILLEGLKDAQIAAEVSEKILNSLE- 545

Query: 206 SQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS-DIE 262
                 +   + I+ S GI  A +  K    +++ +AD ALY AK  GRN    +S D+E
Sbjct: 546 -PPCSINRQEVFISTSIGITFATKGDKNDSKSLMKQADMALYRAKHEGRNNYQYYSPDLE 604

Query: 263 NNT 265
             +
Sbjct: 605 RAS 607


>gi|329889207|ref|ZP_08267550.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328844508|gb|EGF94072.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 453

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 13/200 (6%)

Query: 71  LVIISITISLLLGYISGSILKELF--ISYNRISQ---LSRIDCLSGLLNHSA-------F 118
           L+I  I    L   +   + ++ +      ++     ++  D L+GL N           
Sbjct: 251 LLIRPIDPEELAARVRTQVRRKRYGDFLREKLDHNLEMAVTDPLTGLHNRRYMNGQLDAL 310

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           ++      + ++++  DID+FK +ND+ GH  GD+V+   S +L           R GGE
Sbjct: 311 VARANRGGDPVAVLVLDIDHFKAVNDSLGHDAGDEVLREFSVRLATNVRAVDLPCRFGGE 370

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTII 237
           EF     G++ ++A  +A  +R+ +  S   I  G  + IT+S G+ A R   +  ++++
Sbjct: 371 EFVVVMPGTTLEDAHRIAERIRRDVGASPFRILGGEPLSITVSVGVAATRGADDTPASLL 430

Query: 238 YRADQALYVAKKSGRNRVVC 257
            RAD+ +Y AKK+GRNRVV 
Sbjct: 431 KRADEGVYEAKKAGRNRVVA 450


>gi|113968657|ref|YP_732450.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113883341|gb|ABI37393.1| diguanylate cyclase [Shewanella sp. MR-4]
          Length = 577

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 106/239 (44%), Gaps = 12/239 (5%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           H    YF +  S+F+A   F     +FY G   F  L    V  + +++ ++ ++L++ Y
Sbjct: 330 HPIAKYFLLGHSLFVA---FSGLAVMFYKGRAEFNYLSSHGV-GVGIMLEALVLALIIAY 385

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDID 137
               +L+E+  S   +   +  D L+ L N   F               + ++++  DID
Sbjct: 386 RI-RLLEEIKASQEELKYQAATDSLTQLFNRGHFHKEAQRVYTQASIAQQPMAVIICDID 444

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK++ND +GH +GD+VI  ++  L         V R GGEEF       S  EA + A 
Sbjct: 445 LFKRVNDKYGHLMGDRVIIDIATTLKQHARKCDLVARYGGEEFIMLLHNVSLTEAHLCAE 504

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +R  +        +     +T+S G+A      P+   I  AD ALY AK  GRN V 
Sbjct: 505 RIRSAVAALNFTAETQEVFTVTLSLGVATVDFDHPLEHAIKLADDALYCAKHQGRNNVQ 563


>gi|294852356|ref|ZP_06793029.1| GGDEF domain-containing protein [Brucella sp. NVSL 07-0026]
 gi|294820945|gb|EFG37944.1| GGDEF domain-containing protein [Brucella sp. NVSL 07-0026]
          Length = 266

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 14/234 (5%)

Query: 41  TVIFIANIFLFYIG---LTPFYGLEY--ILVENLSLVIISITISLLLGYISGS--ILKE- 92
             +   ++ LF +G   +T F+  E   ++  +LSL    + I     +I      LKE 
Sbjct: 10  AALLTLSVVLFCVGATSITAFWSGETPGLMAISLSLGFPLVMIFPFSAFIFLRYDKLKEA 69

Query: 93  ---LFISYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNF 146
              L  S+  +   +RID ++GLLN  A   ++    S  E  +++  D D+FK IND+F
Sbjct: 70  YAQLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSF 129

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+
Sbjct: 130 GHGVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENT 189

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV   +
Sbjct: 190 PFHTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVVFDEE 243


>gi|170744709|ref|YP_001773364.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium sp. 4-46]
 gi|168198983|gb|ACA20930.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium sp. 4-46]
          Length = 457

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 86/174 (49%), Gaps = 9/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDN 145
           L  S     +L+  D L+GL N   F S L             L+++  DID FK IND+
Sbjct: 281 LRESVQASMELAVTDGLTGLHNRRYFDSHLAGLFRETSLRGRPLALLLLDIDRFKAINDS 340

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GD+V+   +D++         V R GGEE       +    A  +A  +R+ IE 
Sbjct: 341 FGHDAGDEVLRQFADRIRAHTRGIDIVARFGGEEIVVVVPDTGLDGAGQVAERIRERIEA 400

Query: 206 SQINISSG-PSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVC 257
           +   +  G   I +T+S G+A R   + + + ++ RAD ALY AK+ GRNRVV 
Sbjct: 401 TPFLVHGGTRGIDVTVSIGLAVRHPDDALPADLLKRADVALYRAKQEGRNRVVA 454


>gi|226942971|ref|YP_002798044.1| GGDEF domain-containing protein [Azotobacter vinelandii DJ]
 gi|226717898|gb|ACO77069.1| GGDEF domain protein [Azotobacter vinelandii DJ]
          Length = 448

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 60/180 (33%), Positives = 95/180 (52%), Gaps = 13/180 (7%)

Query: 85  ISGSILKELFISYNRISQLSR---IDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDY 138
           +  +IL  L + + R+ +LS+    D L+GL N     + L  + +     +++  DID+
Sbjct: 273 LKRAILGSLALLHQRLGKLSQESLTDPLTGLANRRRLQAQLERWQQQRQPFAVIALDIDH 332

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+NDN GH  GD+V+ +L+ Q+         + R GGEEF     G+S + A  +A  
Sbjct: 333 FKQVNDNHGHESGDRVLQYLARQMNECSRASDLLCRNGGEEFLMLLPGASLEAARQVAER 392

Query: 199 LRKIIENSQINISSGPSI-HITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
           +R      ++  +SG     +T+SAG+A           ++ RAD ALY AK +GRNRVV
Sbjct: 393 VRA-----RMGAASGEDCPSVTVSAGVAHWPDTSASAEEVLKRADAALYQAKHAGRNRVV 447


>gi|119488985|ref|ZP_01621920.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Phytochrome (GAF) sensor [Lyngbya sp. PCC
           8106]
 gi|119454941|gb|EAW36084.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF &  EAL
           domains) with Phytochrome (GAF) sensor [Lyngbya sp. PCC
           8106]
          Length = 628

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 11/197 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124
           ++  +T  + +      + ++L I+   + +++  D L+ + N   F          L  
Sbjct: 429 LLEQLTTPIAVAIQQAELYEQLKIANQELEKMAMTDGLTLVANRRFFDKILSQEWNRLRR 488

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAA 183
               LS++  DIDYFK+ ND +GH  GD  +  ++  L   V  +   V R GGEEFA  
Sbjct: 489 EIGTLSLIICDIDYFKRYNDTYGHLAGDSCLKKVAQVLQEEVKRSGDLVARYGGEEFAIL 548

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAERCHKEPI--STIIYRA 240
              +  + A +++  +   +   QI       + ++TIS G+A    + P+   T+I RA
Sbjct: 549 LPKTDLEGAILVSEVICSKVRALQITHEKSLVAPYVTISVGVASTIPEPPLIPKTLILRA 608

Query: 241 DQALYVAKKSGRNRVVC 257
           DQALY AKK+GRNRV  
Sbjct: 609 DQALYEAKKNGRNRVFV 625


>gi|89092394|ref|ZP_01165348.1| PAS/PAC sensor hybrid histidine kinase [Oceanospirillum sp. MED92]
 gi|89083482|gb|EAR62700.1| PAS/PAC sensor hybrid histidine kinase [Oceanospirillum sp. MED92]
          Length = 1079

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 69/196 (35%), Positives = 98/196 (50%), Gaps = 14/196 (7%)

Query: 72   VIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------ 122
            V +++ I  +L     +    + E      RI +LS  D L+GL N       L      
Sbjct: 876  VYLNVNIEAMLRDSEVVGYRAISENITDQKRIEELSVTDTLTGLNNRLKIDELLAAQMER 935

Query: 123  -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
               +  K S++  D+D FK +NDNFGH VGDK++  L++ L         VGR GGEEF 
Sbjct: 936  HERHGLKFSVLLLDVDNFKHVNDNFGHDVGDKLLKDLANVLKSNVRKIDTVGRWGGEEFV 995

Query: 182  AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                 +S   A +LA  LR II  +   +        T+S GI+E    + +STI  RAD
Sbjct: 996  VICENTSSANAYVLAEKLRTIIAETDFGVVGQK----TVSIGISELYDGDSLSTIFKRAD 1051

Query: 242  QALYVAKKSGRNRVVC 257
            QALYVAK +G+N+V+ 
Sbjct: 1052 QALYVAKHNGKNQVMV 1067


>gi|194472518|ref|ZP_03078502.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205358613|ref|ZP_02657969.2| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194458882|gb|EDX47721.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205332962|gb|EDZ19726.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 304

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 74/275 (26%), Positives = 124/275 (45%), Gaps = 22/275 (8%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58
           F  IW  H      +   + F  +  S+   +FI ++ F ANI  F +  L P       
Sbjct: 28  FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 87

Query: 59  ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112
                GL  + +  L +V I+I   +   Y   +  ++ +L      ++ LS +D L+GL
Sbjct: 88  NGNEQGLRILYLLALPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 147

Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +          ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 148 YNRRGLQNRLDTLQVPGCHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 207

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      +  Q+A   A  +R+ + + +I      S+  ++T+S GIA 
Sbjct: 208 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 267

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                 I   I +AD+ALY AK  GRN ++   D+
Sbjct: 268 LT-DRNIGDAIEKADKALYEAKHLGRNHILVSDDM 301


>gi|189425976|ref|YP_001953153.1| diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ]
 gi|189422235|gb|ACD96633.1| diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ]
          Length = 461

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 10/178 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           + E     +R+ Q+++ D L+GL N   F+  L           ++ +++F D+D FK+I
Sbjct: 272 ITERKELRDRLEQMAQFDMLTGLPNRRMFLDRLSQTVAIAQRTEQRFALLFVDLDGFKRI 331

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRK 201
           ND++GH  GD+V+  ++ +L         VGR+GG+EF       +  ++A  +A+ +  
Sbjct: 332 NDSYGHEAGDRVLKTVAARLAACIRMSDTVGRMGGDEFTIILSTLAHYEDAGQVADKILD 391

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            +    I +  G    +  S GI+      +    ++  AD A+Y  K++G+N    +
Sbjct: 392 ALSR-PITLPDGQQDTVGSSIGISVFPEDAQDGDGLLATADDAMYKVKRNGKNSYCFY 448


>gi|71907229|ref|YP_284816.1| response regulator receiver modulated diguanylate cyclase
           [Dechloromonas aromatica RCB]
 gi|71846850|gb|AAZ46346.1| response regulator receiver modulated diguanylate cyclase
           [Dechloromonas aromatica RCB]
          Length = 313

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 101/211 (47%), Gaps = 15/211 (7%)

Query: 60  GLEYILVENLSLVIISITISLL--LGYISGSIL---KELFISYNRISQLSRIDCLSGLLN 114
           G +  L + +S +++   I  +  +  +  S+L   ++L  +   + ++S  D L+G+ N
Sbjct: 97  GGDDYLHKPISEIVLGAKIRAMQRIVLMRASLLAVTRKLDAANQELIRISSTDSLTGVAN 156

Query: 115 HSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVF 166
              F             ++  ++++  DIDYFK  ND +GH  GD+ +  ++  +     
Sbjct: 157 RRYFDEAMSIEWRRARRHSNSIALLMCDIDYFKLYNDTYGHQAGDECLRKIAAAISRHTE 216

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                V R GGE+FA     +S   A ++A  +R+  +   I  +S P+  + +S GIA 
Sbjct: 217 RPSDTVARYGGEKFAVILPETSIGGALMVAEKIRQATKELNITHASSPTGQVGLSIGIAS 276

Query: 227 RCH--KEPISTIIYRADQALYVAKKSGRNRV 255
                  P   +I  AD+ALY AKK GR+RV
Sbjct: 277 AAPGFDNPPDDLILAADKALYRAKKEGRDRV 307


>gi|117926670|ref|YP_867287.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Magnetococcus sp. MC-1]
 gi|117610426|gb|ABK45881.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Magnetococcus sp. MC-1]
          Length = 834

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 10/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S +  L  +  R+ QL+  DCL+ L N + F S L            K+ ++F D+D+FK
Sbjct: 368 SDISRLKATEERLEQLAFFDCLTKLPNRAHFQSRLDHALTAANRRQNKVGLIFIDLDHFK 427

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND+ GH  GD+++   + ++         V R+GG+EF       +   A ++ N   
Sbjct: 428 HINDSMGHNAGDQLLIEAAKRIQSCVREEDTVARMGGDEFTIILADLT-DTAKVMTNVAL 486

Query: 201 KIIENSQINIS-SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
            I+E+    I      + I  S G+A         + +I  AD A+Y AK+SGRNR   +
Sbjct: 487 TILESFTHPIVLEDKKLFIGCSLGMAIYPDDSGNAALLIKHADTAMYRAKESGRNRYSFY 546

Query: 259 SDIENNTC 266
           +   N   
Sbjct: 547 TAEMNAQA 554


>gi|289577851|ref|YP_003476478.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Thermoanaerobacter italicus Ab9]
 gi|289527564|gb|ADD01916.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Thermoanaerobacter italicus Ab9]
          Length = 669

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 83/175 (47%), Gaps = 11/175 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFK 140
             + E       + + S  D L+ + N   F+  L    E         S++ FD+D+FK
Sbjct: 496 RDISERKRFEELLYRQSITDPLTNIYNRRFFMQMLEQEIERVKRNKKPFSLIMFDLDHFK 555

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND FGH VGD V+  ++D +        +  R GGEEF      +S   A  LA  LR
Sbjct: 556 NVNDRFGHAVGDMVLKSVADTVKGRIRKTDYFARWGGEEFIILLPETSLNNAVDLAEGLR 615

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           K I  ++++        +T S G+ E    + I TI+ RAD  LY AK++GRN V
Sbjct: 616 KKISETELDGIG----KVTASFGVTEYRDTDTIDTILLRADNMLYEAKRAGRNCV 666


>gi|188579454|ref|YP_001922899.1| diguanylate cyclase [Methylobacterium populi BJ001]
 gi|179342952|gb|ACB78364.1| diguanylate cyclase [Methylobacterium populi BJ001]
          Length = 516

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 10/208 (4%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G     V   ++V++   ++++L  + G  L+        +++LS  D L+GL N   F 
Sbjct: 285 GWRAKAVSIGTVVLLLCGLTVVLSLLFGRELRHRAAMQAELARLSLTDALTGLPNRRRFE 344

Query: 120 S-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMF 171
                         + LS++  D D+FK+ ND +GH VGD+V+  L+  L   V      
Sbjct: 345 EAFEAAWDRARRTGKPLSLLVVDADHFKRYNDRYGHAVGDEVLKGLAQCLSAGVHRPDDL 404

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCH 229
           V R+GGEEFA     + +  A  +A+ + + +    +  +   +  +T+S G+       
Sbjct: 405 VARVGGEEFAILLPDTDQDGAMRIASKVHEAVATVSVPSAGIAAGAVTVSIGLTTGHGSA 464

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVC 257
            E    +   AD ALY AK +GRN+  C
Sbjct: 465 SERAEALYRAADAALYEAKAAGRNQTRC 492


>gi|218532694|ref|YP_002423510.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylobacterium chloromethanicum CM4]
 gi|218524997|gb|ACK85582.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylobacterium chloromethanicum CM4]
          Length = 1423

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 12/190 (6%)

Query: 83  GYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFF 134
           GY++    + +   + + ++ ++R D L+GL N   F   L     +        +++  
Sbjct: 275 GYVAVIRDVSQRKAAESEMAHIARHDPLTGLPNRLHFREQLEQEIRRTKRTGSTFALLCL 334

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAA 193
           D+D FK +ND+ GH  GD+++  ++ ++  V  T   V RLGG+EF       +  ++A+
Sbjct: 335 DLDRFKLVNDSLGHQAGDQLLKVVAQRIRSVLRTEDTVSRLGGDEFVIIQTNCARAEDAS 394

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
            LA  L  I          G    I +S GIA           +  RADQALY AK +GR
Sbjct: 395 RLAERL--IAAMLPPVDLGGYPAGIGVSIGIALAPRDGLDHDHLYARADQALYRAKDAGR 452

Query: 253 NRVVCFSDIE 262
           N    +++ E
Sbjct: 453 NTFRLYAEEE 462



 Score =  154 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 68/197 (34%), Gaps = 37/197 (18%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-----SIVFFDIDYFKQ-- 141
             + E   +  +  + +  D L+GL N   F   L            S+            
Sbjct: 974  DITERKCAEEQAWRAANHDALTGLPNRRLFRQRLEQALTSAECGGASV---------SLL 1024

Query: 142  ---------INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-----LGS 187
                     +ND  GH  GD V+  ++ +L         V RLGG+EFA        +  
Sbjct: 1025 LLDLDHLRDVNDTLGHDAGDTVLMEVAQRLQDGLRATDTVARLGGDEFALLLAEPMRMDQ 1084

Query: 188  SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYV 246
            +   A  L   LR      Q     G  +    S G+A    H      ++  AD ALY 
Sbjct: 1085 AVIHARALIERLR------QPFCHRGHMLSCKASIGLAAYPDHHHESHELMKDADIALYH 1138

Query: 247  AKKSGRNRVVCFSDIEN 263
            AK  GRN VV F+    
Sbjct: 1139 AKAKGRNGVVVFAPEMR 1155


>gi|291288622|ref|YP_003505438.1| response regulator receiver modulated diguanylate cyclase
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885782|gb|ADD69482.1| response regulator receiver modulated diguanylate cyclase
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 312

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 89/173 (51%), Gaps = 8/173 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           KEL  +Y++I  L+  D L+G+ N     + LG           K S++  DID+FK++N
Sbjct: 138 KELIEAYDKIEHLALTDTLTGIANRRNITNMLGKEAARCKRNKGKFSLIMCDIDFFKRVN 197

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD V+  +S  +         V R GGEEF      +    A  +A  LR  I
Sbjct: 198 DTYGHDAGDYVLKTISHVIQQALREQDIVARWGGEEFLIVLPETDAGNAVAVAEKLRTAI 257

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            N++++   G S  +T++ G++E      I   I +AD ALY  K++GRN+VV
Sbjct: 258 GNTEMSY-EGISFSVTMTFGVSEYDVSLGIEKSIKKADDALYEGKQTGRNKVV 309


>gi|319786533|ref|YP_004146008.1| diguanylate cyclase with beta propeller sensor [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465045|gb|ADV26777.1| diguanylate cyclase with beta propeller sensor [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 996

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 8/176 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           +L++L       ++ +R D L+GL N   F   L             L +   DID+FK+
Sbjct: 821 LLEQLREQAEAYARQAREDALTGLPNRRQFDEHLARDIALARRGAHPLCLALLDIDHFKR 880

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND   H VGD+V+  +   L         V RLGGEEFA     +  +EA +  ++L++
Sbjct: 881 INDTRSHAVGDQVLREVGQVLQGERRGSDLVARLGGEEFALLMPDTLLEEAQLACDNLQE 940

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I   +   +    + +T S G+      E +  +  RAD ALY AK +GR+R+  
Sbjct: 941 AIRRHR-PWAGDEELQVTFSLGLVALRPGEGMEDLYRRADAALYQAKHAGRDRLQI 995


>gi|257487298|ref|ZP_05641339.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|331009096|gb|EGH89152.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 425

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 92/183 (50%), Gaps = 12/183 (6%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           +  Y+S    +        ++ +++  D L+GL N  A   +L           +  +++
Sbjct: 237 ITHYVSISQDVTTRLGREQKLLEIAHSDPLTGLNNRRAAEHTLERLIDTARISGKPFTLI 296

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK +ND +GHP GD+V+  ++  L           R GGEEF      SS   A
Sbjct: 297 IGDIDHFKSVNDRYGHPAGDRVLTSVAVILKQRIRLQDVAARWGGEEFLIFVPDSSLDHA 356

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           A LA+ +R+ +E   I      +  +TIS G+A+    E  +++I RAD+ALY AK+ GR
Sbjct: 357 AELADRIREGVEGLLIP----NTGSVTISLGVAQLSPGETAASLIQRADKALYQAKRRGR 412

Query: 253 NRV 255
           NRV
Sbjct: 413 NRV 415


>gi|224371113|ref|YP_002605277.1| sensory box histidine kinase (GGDEF domain protein) [Desulfobacterium
            autotrophicum HRM2]
 gi|223693830|gb|ACN17113.1| sensory box histidine kinase (GGDEF domain protein) [Desulfobacterium
            autotrophicum HRM2]
          Length = 1268

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 60/194 (30%), Positives = 94/194 (48%), Gaps = 13/194 (6%)

Query: 71   LVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG----- 123
            L I ++  S +L +     +  +++  +  ++ QLS  D L+GL N      +L      
Sbjct: 1075 LFITALLFSGILFWNRKLSAFNRQMAEANAKLEQLSVTDRLTGLYNRMKIDDTLLEEIGR 1134

Query: 124  --SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
               YN  LS++  DID FKQ+ND  GH  GD V+  ++  +     +    GR GGEEF 
Sbjct: 1135 VLRYNYPLSLILMDIDLFKQVNDTHGHQAGDAVLIQMAKTMDKNIRSTDICGRWGGEEFM 1194

Query: 182  AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                 +  + A  LA  LR+ I               T S G+A+  + +  + +I RAD
Sbjct: 1195 VICPHTDLKGALSLAEHLRESIARQIFPHVITQ----TGSFGVAQYGNGDSEADLIARAD 1250

Query: 242  QALYVAKKSGRNRV 255
            +A+Y+AK+ GRNRV
Sbjct: 1251 RAMYLAKEGGRNRV 1264


>gi|254560871|ref|YP_003067966.1| diguanylate cyclase [Methylobacterium extorquens DM4]
 gi|254268149|emb|CAX24038.1| putative diguanylate cyclase with GGDEF motif; putative membrane
           protein [Methylobacterium extorquens DM4]
          Length = 417

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 119/263 (45%), Gaps = 22/263 (8%)

Query: 4   SLKDFLSIW--LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL 61
           +L   L +W  L    ++  ++ +  ++ F  +F  F+ T+  I   F      +P  G+
Sbjct: 130 ALSTALCMWEILRTPASMRLWTQYIVLLGFGGYFIAFLLTIGVIH--FANERLASPESGI 187

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
             +L +    V I +    ++             ++ ++S+L+  D L+GL N     ++
Sbjct: 188 YSLLFDLWCGVFIQVGYLAMVS----------ERAHLKLSRLADTDPLTGLANRRGLFAA 237

Query: 122 LGSYNE------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
           L           + +I+  DID+FK IND +GH  GD  +   +++L  V      V R 
Sbjct: 238 LSQRAGLSPSPPRCAILLADIDHFKAINDTYGHDGGDAALVGFAERLRGVMRKDDLVARW 297

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-IS 234
           GGEEF      +    AA +A  LRK        + +G ++ +T S G+A     E  I 
Sbjct: 298 GGEEFLVVLDQADATAAATVAERLRKSAAGQPFTV-NGAAVTVTASIGVAVVAAGEERID 356

Query: 235 TIIYRADQALYVAKKSGRNRVVC 257
             + RAD ALY AK++GRNRV  
Sbjct: 357 AALSRADAALYAAKRAGRNRVCL 379


>gi|218887844|ref|YP_002437165.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218758798|gb|ACL09697.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 698

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 9/167 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ QL+  D L+G+ N   F++ L         Y   LS++  D D+FK IND +GH  G
Sbjct: 506 RLEQLATTDELTGVANRRHFMARLEDEAARAQRYGRPLSVLLLDADHFKSINDTWGHEAG 565

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++D + +       +GRLGGEEF      ++++ A   A  +R  +E++ + + 
Sbjct: 566 DMVLRHITDVMGLSLRENDLIGRLGGEEFGVLLPETAQERALRTAERIRAAVEDAPVAVR 625

Query: 212 SGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
               +  T+S G AE     + +  +I RAD  L  AK+ GRNRV  
Sbjct: 626 D-VWVGCTVSVGAAEYRGANDSLDDLIRRADHMLMRAKEEGRNRVCA 671


>gi|170723973|ref|YP_001751661.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida W619]
 gi|169761976|gb|ACA75292.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida W619]
          Length = 1247

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           + +  L  +  ++   +  D L+GL N + F + L +        N + +++F D+D FK
Sbjct: 791 ADISSLKHAQAKLDYQAHHDPLTGLPNRALFENRLQAALICPQASNRQGAVLFLDLDRFK 850

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            IND+ GHPVGD ++  ++ +L         V RLGG+EF     G  +  +A+ +AN L
Sbjct: 851 HINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFIILLPGLHKPSDASAIANKL 910

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 S    +       + S GI+        ++T+I  AD A+Y +K  GRNRV  +
Sbjct: 911 LSCF--SAPFQAGEHEFFTSASIGISLYPQDGTDVATLIRNADAAMYRSKAKGRNRVEAY 968

Query: 259 S 259
           +
Sbjct: 969 T 969


>gi|163848137|ref|YP_001636181.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222526038|ref|YP_002570509.1| diguanylate cyclase with GAF sensor [Chloroflexus sp. Y-400-fl]
 gi|163669426|gb|ABY35792.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222449917|gb|ACM54183.1| diguanylate cyclase with GAF sensor [Chloroflexus sp. Y-400-fl]
          Length = 589

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 19/237 (8%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
            +A  + + +  +  + +   +   Y + +  +L +++ T+++ L              +
Sbjct: 361 LLAAPLIVGDRIIGALLVWSNHHDAYTMADLNALELLAATVAVALHNAF---------RF 411

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            +I   +  D L+GL N   F+  L         Y+  +SI   D+D+FKQIND FGH  
Sbjct: 412 AQIQSQAITDNLTGLANRRHFLQVLHQEMERNRRYHTPVSIAMIDVDHFKQINDTFGHIA 471

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  ++ +          + R GGEEF      ++ ++A      LR ++  + I I
Sbjct: 472 GDYVLREIARRCRQQLRDVDVLARYGGEEFGLILPETTYEQALKATERLRTVLATTPIMI 531

Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             G  I+ TIS G+A          S++I  AD+ALY+AK+ GRNRV    ++ N+ 
Sbjct: 532 -DGRQINPTISIGVASFHPTVYPDPSSLIADADRALYLAKQQGRNRVCGVQELTNDA 587


>gi|71909233|ref|YP_286820.1| GGDEF [Dechloromonas aromatica RCB]
 gi|71848854|gb|AAZ48350.1| GGDEF protein [Dechloromonas aromatica RCB]
          Length = 413

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 11/231 (4%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101
              +   +LF +G +  +     +  +  +++ SI   +L+ +    +  E       + 
Sbjct: 161 AFLLIRPWLFSLGKSGLFDAAQAIAVSQFVMVESIAAIVLMAFGIVMLANEQVTL--ELR 218

Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            ++  D L+G+ N  +F++ L             LSI+  D+D+FK+IND +GH  GD+ 
Sbjct: 219 AIAERDPLTGVFNRRSFLTLLDKSISHSDRMASPLSIMLIDLDHFKKINDTWGHKSGDEA 278

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +       V        +GR+GGEEFA     +   +AA +A  LR  +    +    G 
Sbjct: 279 LRHFVAVAVPCIRNGDIIGRVGGEEFAILLPDTDISKAATVAERLRCEVAARPVKNEHG- 337

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           SI +T+S G+      E     ++RAD A+Y AK  GRN+V    D+ NNT
Sbjct: 338 SITLTVSIGVTHYRKDEAPEVTLHRADNAMYTAKDKGRNQVEVTPDL-NNT 387


>gi|330827229|ref|YP_004390532.1| diguanylate cyclase [Alicycliphilus denitrificans K601]
 gi|329312601|gb|AEB87016.1| diguanylate cyclase [Alicycliphilus denitrificans K601]
          Length = 395

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 108/228 (47%), Gaps = 16/228 (7%)

Query: 41  TVIFIANIFLFYIGLTPFYGL-EYILVENLSLVIISITISLL-LGYISGSILKELFISYN 98
            V+      L      P  GL     +++ + + + + + L  LG+I   + K+   + N
Sbjct: 158 VVLLGVRGVLAAAHAMPLDGLMRGGPLQSFTFMAVFVVVILASLGFIL--MTKDRADADN 215

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R    +  D L+G+ N  A + +L           E  +++  D+D+FK +ND  GH  G
Sbjct: 216 R--YFATHDELTGVANRRALVQALDRDVAHAVRSGEPYALLMLDVDHFKSVNDGHGHRAG 273

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++  L         VGR GGEEF     G+  + AA LA  LR+ +E +     
Sbjct: 274 DQVLCHVAAILRARLRAQDLVGRYGGEEFMVLLPGTPARGAAGLAKTLREAVEQTPCEY- 332

Query: 212 SGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            G  I +T+S G+  A     +    +I+ ADQALY AK +GRNRV C
Sbjct: 333 GGRVIPVTVSIGVCGARLGSGDTWDRLIHAADQALYAAKAAGRNRVEC 380


>gi|291279263|ref|YP_003496098.1| hypothetical protein DEFDS_0866 [Deferribacter desulfuricans SSM1]
 gi|290753965|dbj|BAI80342.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 538

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 64/174 (36%), Positives = 86/174 (49%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           KEL     ++ +LS  DCL+ L N       L         YN+  SI+ FDID FK IN
Sbjct: 369 KELEKINQKLQKLSITDCLTKLYNRGKIEKDLTNEYNKAIRYNDTFSIILFDIDNFKIIN 428

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH +GDK++  +++             R GGEEF      ++   A  LA  LRK I
Sbjct: 429 DTYGHQMGDKILIEIANLTKETIRNTDIAARWGGEEFLILCPKTNINSAFNLAERLRKKI 488

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           E+   +I       ITIS GIAE      I  ++ +AD  LY AKK G+NRV+ 
Sbjct: 489 ESHDFSIDK----RITISGGIAEFKKGLTIDEMLKQADDNLYKAKKEGKNRVIF 538


>gi|311235013|gb|ADP87867.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris
           RCH1]
          Length = 572

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 9/183 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDI 136
           Y     +         + +++ +D L+G+ N + F+ +L    ++        S++  D+
Sbjct: 373 YAVVRDVTHQKRQEVELRRMASMDALTGVSNRATFMETLADMMQRCCHDRAVASVLVMDV 432

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK +ND +GH VGD+V+  L   +V +  T   VGRLGGEEF     G   + A  +A
Sbjct: 433 DNFKLVNDTWGHAVGDEVLRRLGRAMVPLLRTVDTVGRLGGEEFGVLLPGVGPEAACCVA 492

Query: 197 NDLRKIIENSQINISS--GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             LR  I   ++      G ++ +T+S G+A       ++ ++  AD+ALY AK SGR+R
Sbjct: 493 ERLRAAIAAMEVPCDDGRGEALRVTVSVGVASCPPYHSVTEVLRAADKALYRAKASGRDR 552

Query: 255 VVC 257
           VVC
Sbjct: 553 VVC 555


>gi|46201536|ref|ZP_00054870.2| COG5001: Predicted signal transduction protein containing a
           membrane domain, an EAL and a GGDEF domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 822

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 52/213 (24%), Positives = 95/213 (44%), Gaps = 12/213 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +  E L++ ++      L  Y++  S +        R++  +  D L+ L N + F   L
Sbjct: 344 MFAEWLNISVVRDERGDLTNYVAVFSDITSRKQDEERLNYQANHDPLTRLPNRTLFQERL 403

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                +       ++++F D+D+FKQ+ND  GH  GD ++  ++++L         V RL
Sbjct: 404 SRALTRAHRNQTIVALLFIDLDFFKQVNDTLGHLAGDILLQQVAERLSSCVRQGDTVARL 463

Query: 176 GGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PI 233
            G+EF       +E ++ A++A+ +  ++   +     G    I+ S G+A         
Sbjct: 464 AGDEFTVILEEITEPRDCAVVAHKILSLMA--EPFDLQGHEARISSSIGVALYPSDSGDA 521

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            T+I  AD A+Y AK  GRN     S+  N   
Sbjct: 522 QTLIKLADAAMYRAKHQGRNACRFHSESINAQA 554


>gi|332531461|ref|ZP_08407365.1| diguanylate cyclase [Hylemonella gracilis ATCC 19624]
 gi|332039130|gb|EGI75552.1| diguanylate cyclase [Hylemonella gracilis ATCC 19624]
          Length = 406

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 70/270 (25%), Positives = 114/270 (42%), Gaps = 23/270 (8%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
             ++ C+  N  +F      +   +      A V++ + +      L P  G+   ++  
Sbjct: 131 FVLFACNNINFVAFYGGRTGVPRLVGAMGLGAAVVWFSGLHY---PLNPDTGVAATVLSM 187

Query: 69  LSLVIISITIS------LLLGYISGSILKELFISYN----RISQLSRIDCLSGLLNHSAF 118
           ++L +  +          L    S   L+E +   N    R+ + +  D L+GL N    
Sbjct: 188 VALTLYLVAFGHTGHQRALAWRKSNLKLREQYKKINALQARLREQAVRDPLTGLYNRRHL 247

Query: 119 -------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  ++   +    L++V  D+D+FK IND  GH VGD V+  L+  +         
Sbjct: 248 GEVLEPELARCRAARSSLAVVLIDVDHFKCINDTRGHAVGDLVLQSLAQLMQRHVRAQDM 307

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS--SGPSIHITISAGIAERC- 228
           V R GGEEF       S + AA  A  LR     + + +S    P + +T+S G+A    
Sbjct: 308 VFRYGGEEFLLLLPDISLETAAQRAEALRTAFGQTPMRVSAKEAPPLTVTLSCGVAAFPL 367

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           H E    +I  ADQALY AK+ GRNR   +
Sbjct: 368 HAEQGEALISCADQALYAAKRQGRNRTQVW 397


>gi|119485195|ref|ZP_01619580.1| GGDEF domain protein [Lyngbya sp. PCC 8106]
 gi|119457423|gb|EAW38548.1| GGDEF domain protein [Lyngbya sp. PCC 8106]
          Length = 514

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 71/220 (32%), Positives = 104/220 (47%), Gaps = 15/220 (6%)

Query: 48  IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY---ISGSILKELFISYNRISQLS 104
           IF ++I ++   G +Y+L     ++ +S+ I  LL Y   I     K+L  +  ++  L 
Sbjct: 298 IFYYWISVSYDKGFDYVLF--WEIMAVSLVILSLLFYRNLIISRYNKKLIEANKKLDCLY 355

Query: 105 RIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           + D L+GL N                 YN   S+V  D+D+FKQIND +GH VGD V+  
Sbjct: 356 KTDKLTGLFNRHIIDEETEKEVLRANRYNLGFSVVLLDVDHFKQINDTYGHHVGDSVLVE 415

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           ++  L         VGR GGEEF      +    AA LA  LR  IE  Q    SG    
Sbjct: 416 IAFILKNNLRKTDVVGRWGGEEFIVICPETQLTNAAHLAEKLRSQIECHQF---SGVEKT 472

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IT S G++     + + ++I R D  LY +K++ RN V  
Sbjct: 473 ITASFGVSAYRVDDTVESLIKRVDSTLYFSKRNNRNCVTV 512


>gi|218530043|ref|YP_002420859.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
 gi|218522346|gb|ACK82931.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
          Length = 417

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 119/263 (45%), Gaps = 22/263 (8%)

Query: 4   SLKDFLSIW--LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL 61
           +L   L +W  L    ++  ++ +  ++ F  +F  F+ T+  I   F      +P  G+
Sbjct: 130 ALSTALCMWEILRTPASMRLWTQYIVLLGFGGYFIAFLLTIGVIH--FANERLASPESGI 187

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
             +L +    V I +    ++             ++ ++S+L+  D L+GL N     ++
Sbjct: 188 YSLLFDLWCGVFIQVGYLAMVS----------ERAHLKLSRLADTDPLTGLANRRGLFAA 237

Query: 122 LGSYNE------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
           L           + +I+  DID+FK IND +GH  GD  +   +++L  V      V R 
Sbjct: 238 LSQRAGLSPSPPRCAILLADIDHFKAINDTYGHDGGDAALVGFAERLRGVMRKDDLVARW 297

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-IS 234
           GGEEF      +    AA +A  LRK        + +G ++ +T S G+A     E  I 
Sbjct: 298 GGEEFLVVLDQADATAAATVAERLRKSAAGQPFTV-NGAAVTVTASIGVAVVAAGEERID 356

Query: 235 TIIYRADQALYVAKKSGRNRVVC 257
             + RAD ALY AK++GRNRV  
Sbjct: 357 AALSRADAALYAAKRAGRNRVCL 379


>gi|153869997|ref|ZP_01999488.1| diguanylate cyclase/phosphodiesterase [Beggiatoa sp. PS]
 gi|152073537|gb|EDN70512.1| diguanylate cyclase/phosphodiesterase [Beggiatoa sp. PS]
          Length = 604

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 12/205 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I VE +S+  I      ++ Y++  + + +   +   I   +  D L+ L N   F+  L
Sbjct: 399 IYVEWISITTIRDANHQIVQYVAVFTDITKRKQNEELILHQAHHDALTNLPNRILFVDRL 458

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                    +  +++++F D+D FK +ND  GH  GD ++  ++ +L+        V RL
Sbjct: 459 KQALLTAKRHQGRVAVMFIDLDRFKSVNDTLGHDFGDLLLKEVAQRLIACIRESDTVARL 518

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF        +  +  I+A  + K +  SQ  I       I  S GIA      +  
Sbjct: 519 GGDEFTVVLTQIQNISDIRIIAQRMLKSL--SQPFIQKDNEAFIGGSIGIAFFPKDGQEA 576

Query: 234 STIIYRADQALYVAKKSGRNRVVCF 258
            T++ +AD A+Y AK+ GRN    +
Sbjct: 577 ETLVKKADIAMYQAKQEGRNTSRFY 601


>gi|90021551|ref|YP_527378.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89951151|gb|ABD81166.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 603

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 68/270 (25%), Positives = 112/270 (41%), Gaps = 35/270 (12%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL- 82
           P+ FM       ++ I  + F+  +     G  P     Y ++   +L+   I   L + 
Sbjct: 319 PYAFMAPVMTVLTLTIMPLFFVMGVLRLASGYRP---ARYFMLAWTALIFSVIVYVLKVF 375

Query: 83  -----------GYISGSILKELFISYN------RISQLSRIDCLSGLLNHSAFI------ 119
                      G+  GSI++ + +S         + Q S  D L+ + N   F       
Sbjct: 376 GVLPRTFFTENGFQIGSIIEMVLLSLALGSRMTELKQQSHTDALTEIGNRRRFDDVFPVE 435

Query: 120 -SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                   + L+++  DIDYFK++ND FGH  GD+ +  ++  +  +   PM   R GGE
Sbjct: 436 FERAQRNKQPLALLMIDIDYFKKLNDTFGHDAGDQALRAVATTIKTLTRKPMLPCRFGGE 495

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTI 236
           EFA     +    A I+A  +R+ I    +         +T+S G+A            I
Sbjct: 496 EFAVILPRTDSAAAKIVAERIRQTIAEKPMAKRE-----VTVSVGVASTDMGYFTSSRAI 550

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           +  AD+ LY+AK+ GRNRV  FS+      
Sbjct: 551 MNAADECLYLAKEMGRNRVCLFSEAPQKQA 580


>gi|52841402|ref|YP_095201.1| sensory box protein [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52628513|gb|AAU27254.1| sensory box protein [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 755

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 117/285 (41%), Gaps = 30/285 (10%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63
            + D         +  E  S   +++   I +    A+   I +  +FY+ LT      Y
Sbjct: 192 QIPDMWLYDSYVSRPFELISVFIYLMLMIIVYPKIYASYPTILSDSVFYMSLTQVVLAIY 251

Query: 64  ILVENLSLVIISITISLLLGYISGSI-------------------LKELFISYNRISQLS 104
           I++ + +    +  I+  L  +   I                    K L I    +  ++
Sbjct: 252 IMLLSTTPYDSAFNIAYFLKVVVYFIPCTCFVINYVFSYSAVLEGQKNLKIKQEELKYMA 311

Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
             D L+ L N   F   L          N  L+++  D+D FK IND FGH  GD+++  
Sbjct: 312 SHDPLTNLFNRREFEDLLDKSIANGQRNNSSLALLLIDLDNFKAINDTFGHFHGDELLKQ 371

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSI 216
            +++LV++      + R+GG+EF   +L   S   A  LA  +    E +     +G  I
Sbjct: 372 FANRLVLLVRKGDLLSRVGGDEFTLISLNIESPSSARHLAERILN--ELNSPYTINGKLI 429

Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +T+S GI+           ++ +AD A+Y AK SG+N    +++
Sbjct: 430 TVTVSIGISIFPDDGNTTEDLLRKADLAMYKAKNSGKNTYQFYTE 474


>gi|50122296|ref|YP_051463.1| putative signaling membrane protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612822|emb|CAG76272.1| putative signaling membrane protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 532

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 88/168 (52%), Gaps = 8/168 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHP 149
           L     ++S  +  D L+GLLN      ++    S + +++ +  DID+FK++ND +GH 
Sbjct: 355 LHKRIGKLSLQAHTDPLTGLLNRRGIYENIELILSKSNQVAAIVIDIDHFKRVNDTYGHN 414

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD VI  L+  +         + R GGEEF +    +  ++AA +A  LRK +E   + 
Sbjct: 415 IGDDVIKLLAKNIKQSSRGSDLICRTGGEEFLSLLPDTDMKQAAEIAERLRKKVEKMPLP 474

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           I      +ITIS G+       E I +++  AD ALY AK  GRNRVV
Sbjct: 475 IPE----YITISLGVTCFIPGTEQIDSVLKTADDALYQAKHEGRNRVV 518


>gi|226942092|ref|YP_002797166.1| hypothetical protein LHK_03180 [Laribacter hongkongensis HLHK9]
 gi|226717020|gb|ACO76158.1| Predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Laribacter hongkongensis
           HLHK9]
          Length = 1113

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
            ++ S L E      RI  L+  D L+GL N +A I  LG             ++++ D+
Sbjct: 656 LVTLSELSERQRQEARIRYLAEHDSLTGLYNRAALIERLGDVLAQARRQPHVGAVMYLDL 715

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAIL 195
           D FKQIND  GH  GD ++  ++ ++  V  T   VGR+GG+EF          ++AA +
Sbjct: 716 DRFKQINDTLGHEAGDALLIEVARRIRSVVRTGDAVGRMGGDEFVVLLARLEYPRDAAAV 775

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A+ L   +   +  + SG  +    S G+A      E   T++  AD A+Y  K  GR R
Sbjct: 776 ADKLLAAL--LEPFVLSGQRVESPASIGVAMFPQDGEDADTLLRHADAAMYDVKTQGRGR 833

Query: 255 VVCFS 259
              F+
Sbjct: 834 WQFFT 838


>gi|66047492|ref|YP_237333.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63258199|gb|AAY39295.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 1278

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 15/192 (7%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            S + E   S +RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 827  SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQAWVVLMFLDLDRFK 886

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-----L 195
             IND+ GH  GD+++  ++ +L+        V R+GG+EF         +EAA+     +
Sbjct: 887  PINDSLGHAAGDRMLQEMATRLLACVSVDDTVARMGGDEFTLLLEPDESREAALNRAIHV 946

Query: 196  ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            A  +   +      +  G    +T S GIA      + +S ++  AD A+Y AK+ G+N 
Sbjct: 947  AERILTSL--ITPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNN 1004

Query: 255  VVCFSDIENNTC 266
               +    N T 
Sbjct: 1005 FQFYQADMNATA 1016


>gi|83313253|ref|YP_423517.1| hypothetical protein amb4154 [Magnetospirillum magneticum AMB-1]
 gi|82948094|dbj|BAE52958.1| Hypothetical 918 kDa protein Y4LL [Magnetospirillum magneticum
           AMB-1]
          Length = 833

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 77/183 (42%), Gaps = 11/183 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           + G  + E  ++  RI  L+  D L+ L N   F   L            KL+++F D+D
Sbjct: 383 LVGRDVTERKLAAARIQHLAHHDALTELPNRVLFQERLRQSLAQAKRSGWKLALMFLDLD 442

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA 196
            FK IND  GH VGD ++  ++ +L         V RLGG+EFA         + A+ +A
Sbjct: 443 KFKDINDTLGHHVGDLLLRAVAKRLTRCVRETDTVARLGGDEFAVILTNLDDLEGASRVA 502

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             +   I +          +  + S GI            ++  AD A++ +K  GRN  
Sbjct: 503 ESIIAGIAD--PFGLDEHEVRTSTSIGITLYPDDSIDADQLLKNADLAMFRSKAEGRNNY 560

Query: 256 VCF 258
             +
Sbjct: 561 HFY 563


>gi|118581541|ref|YP_902791.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Pelobacter
           propionicus DSM 2379]
 gi|118504251|gb|ABL00734.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pelobacter propionicus DSM 2379]
          Length = 754

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 11/189 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
           Y     + +  I+   I+  +  D L+ L N   F   L         +   + ++F D+
Sbjct: 277 YGVARDITDRKIAEETIAFQAFHDHLTHLPNQRLFKDRLEMAITHSKRHGGMVGVMFIDL 336

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FK +ND  GH  GD+++  ++ +L         + R GG+EF          ++AA++
Sbjct: 337 DRFKIVNDTHGHAAGDELLKNVAHRLRHCIRAVDTLARKGGDEFTVLLPDLMRAEDAALI 396

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  +    E       +G   H++ S GIA      E I T++  AD A+Y  K SG+N 
Sbjct: 397 AEKIMH--ELGIPFSVAGQKFHVSASIGIAIVPRDGESIDTLLKSADIAMYRVKASGKNG 454

Query: 255 VVCFSDIEN 263
              F+   N
Sbjct: 455 YRFFTPDMN 463


>gi|307824075|ref|ZP_07654302.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Methylobacter tundripaludum SV96]
 gi|307734859|gb|EFO05709.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Methylobacter tundripaludum SV96]
          Length = 1780

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 50/217 (23%), Positives = 95/217 (43%), Gaps = 19/217 (8%)

Query: 64   ILVENLSLVIISITISLLLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
            I  + LS+  +S   + +  Y++  + + +   +   I  L+  D L+ L N       L
Sbjct: 1302 IYPQWLSITTVSDANNQITNYVAAFTDITKDKEAEETIHNLAYYDPLTALPNRRLLWERL 1361

Query: 123  -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                       ++L+++  D+D FK +ND+ GH  GD+++  ++ ++         V RL
Sbjct: 1362 KHGIEVERRDGKQLALLMLDLDRFKAVNDSMGHLAGDELLQQVAARIKARLRDVDMVARL 1421

Query: 176  GGEEFAAAALG-SSEQEAAILANDLRKIIE---------NSQINISSGPSIHITISAGIA 225
            GG+EF       +  ++AA +A ++   +          ++  +      + I  S GI+
Sbjct: 1422 GGDEFIVLLEDITHPEDAARVAENIVADLSKPFQLLKNNSACPDPELSRKVRIGASIGIS 1481

Query: 226  ERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                H +   T++  AD ALY AK  GR     FS+ 
Sbjct: 1482 LFPQHGDSPETLLDNADIALYRAKDEGRGCFAYFSEE 1518


>gi|319765034|ref|YP_004128971.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|317119595|gb|ADV02084.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
          Length = 395

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 108/228 (47%), Gaps = 16/228 (7%)

Query: 41  TVIFIANIFLFYIGLTPFYGL-EYILVENLSLVIISITISLL-LGYISGSILKELFISYN 98
            V+      L      P  GL     +++ + + + + + L  LG+I   + K+   + N
Sbjct: 158 VVLLGVRGVLAAAHAMPLDGLMRGGPLQSFTFMAVFVVVILASLGFIL--MTKDRADADN 215

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R    +  D L+G+ N  A + +L           E  +++  D+D+FK +ND  GH  G
Sbjct: 216 R--YFATHDELTGVANRRALVQALDRDVAHAVRSGEPYALLMLDVDHFKSVNDGHGHRAG 273

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++  L         VGR GGEEF     G+  + AA LA  LR+ +E +     
Sbjct: 274 DQVLCHVAAILRARLRAQDLVGRYGGEEFMVLLPGTPARGAAGLAKTLREAVEQTPCEY- 332

Query: 212 SGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            G  I +T+S G+  A     +    +I+ ADQALY AK +GRNRV C
Sbjct: 333 GGRVIPVTVSIGVCSARLGSGDTWDRLIHAADQALYAAKAAGRNRVEC 380


>gi|158336630|ref|YP_001517804.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158306871|gb|ABW28488.1| diguanylate cyclase (GGDEF) domain protein [Acaryochloris marina
           MBIC11017]
          Length = 433

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 92/210 (43%), Gaps = 18/210 (8%)

Query: 69  LSLVIISITISLLLGYISGS---ILKELFISYNR----ISQLSRIDCLSGLLNHSAFISS 121
           L+L II     + LG   G    + +EL          + +L+ +D L+ L N   F   
Sbjct: 223 LALTIIITLAMMGLGLAVGRFRTLNQELEKKVAERTAALERLAMVDELTQLANRRQFDQR 282

Query: 122 LG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVG 173
           L             LS++  D+DYFK  ND +GHP GD+ +  ++  L   +     F  
Sbjct: 283 LEQAWKVARRQQHPLSLILCDVDYFKNYNDTYGHPAGDECLRSIAKVLDRSIRRPGEFSA 342

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKE- 231
           R GGEEFA      S  +A  +   ++  I   QI   S  +   +T+S GIA       
Sbjct: 343 RYGGEEFAIVLPNVSRMDAIQIVTTIQTAIHQLQIPHRSSLNHASVTLSLGIATMIPNAN 402

Query: 232 -PISTIIYRADQALYVAKKSGRNRVVCFSD 260
                +I  AD+ALY AK  GR+R V + +
Sbjct: 403 YSPEQLIQAADEALYQAKHQGRDRYVVWDN 432


>gi|82701763|ref|YP_411329.1| diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis
           ATCC 25196]
 gi|82409828|gb|ABB73937.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosospira multiformis ATCC 25196]
          Length = 699

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 11/183 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
              + +   S  RI  L+  D L+GL N + F   +         Y  +L+++F D+D F
Sbjct: 243 ARDITQRKESQERIEYLAHYDLLTGLPNRALFTDRMRIAIENASRYAFRLALLFVDLDRF 302

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND+ GH +GDK++  +++++         V RLGG+EF        +  EAA +A  
Sbjct: 303 KLINDSLGHAIGDKLLKAVAERMQSTVRQADTVSRLGGDEFVVLLGRIHTATEAARVAEK 362

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
           L  ++  SQ        + +T S GI+      + +++++  AD ++Y AK  GRNR   
Sbjct: 363 LIAVL--SQPYQIEQHELLLTASVGISIYPDSGKDVNSLMRNADVSMYSAKGQGRNRYQF 420

Query: 258 FSD 260
           +S+
Sbjct: 421 YSE 423


>gi|304407393|ref|ZP_07389046.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus
           curdlanolyticus YK9]
 gi|304343834|gb|EFM09675.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus
           curdlanolyticus YK9]
          Length = 327

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 86/177 (48%), Gaps = 12/177 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           +EL    +++  L+  D L+GL N   F   L              S++  DID+FK IN
Sbjct: 152 QELLRLNHQLEALASTDPLTGLRNRRFFQEQLLANIALFQRMRLPFSLLIVDIDHFKAIN 211

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGHPVGD V+  L   L  +      V R GGEEF   A  S+   A + A   R  I
Sbjct: 212 DTFGHPVGDAVLTDLGQMLRSMSRESDIVARYGGEEFVIIAPSSTRDNAKLAAERFRAQI 271

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           E + +         +T+S G+A     +   T++ +ADQALY +K +GRNRV   +D
Sbjct: 272 EAATLG-----GCQVTVSIGVATMTSVDTDVTLLQKADQALYASKSNGRNRVTHAAD 323


>gi|227114954|ref|ZP_03828610.1| putative signaling membrane protein [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 532

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 59/169 (34%), Positives = 87/169 (51%), Gaps = 8/169 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHP 149
           L     ++S  +  D L+GLLN      S+    S + +++ +  DID+FK++ND +GH 
Sbjct: 355 LHKRIGKLSLQAHTDPLTGLLNRRGIYESIELILSKSNRVAAIVIDIDHFKRVNDTYGHN 414

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD VI  L+  +         + R GGEEF A    +   +AA +A  LRK +E   + 
Sbjct: 415 IGDDVIRLLAKNIKQGSRESDLICRTGGEEFLALLPDTDMTQAADIAERLRKKVEKMPLP 474

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           I      +ITIS G+       E I +++  AD ALY AK  GRNRVV 
Sbjct: 475 IPE----NITISLGVTCFTPGMEQIDSVLKIADDALYQAKHEGRNRVVI 519


>gi|209885133|ref|YP_002288990.1| diguanylate cyclase [Oligotropha carboxidovorans OM5]
 gi|209873329|gb|ACI93125.1| diguanylate cyclase [Oligotropha carboxidovorans OM5]
          Length = 355

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 67/200 (33%), Positives = 103/200 (51%), Gaps = 11/200 (5%)

Query: 74  ISITISLLLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------- 124
           +S+T   L   ++ S L+   L  S   I   S  D L+ L N   F  +L S       
Sbjct: 146 MSLTNKALEARLATSRLEIASLQDSLEAIRTESLTDPLTSLGNRKYFDRALESAVEHASH 205

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           ++E LS++  DID+FK  NDN+GH  GD+V+  ++  L           R GGEEF    
Sbjct: 206 HDEPLSLLMVDIDHFKSFNDNYGHLTGDQVLRLVALALKANIKGQDLTARYGGEEFVVIL 265

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQ 242
             +S ++A  +A+++R+ + + Q+   S   I   +TISAG++     +    +I RAD 
Sbjct: 266 PNTSMRQALAVADNIRRAVMSKQLKKKSTGEILGRVTISAGVSTFRPGDDAPALIDRADA 325

Query: 243 ALYVAKKSGRNRVVCFSDIE 262
            LY AK+ GRNRV+C +D E
Sbjct: 326 CLYAAKRHGRNRVICEADPE 345


>gi|121596400|ref|YP_988296.1| diguanylate cyclase [Acidovorax sp. JS42]
 gi|120608480|gb|ABM44220.1| diguanylate cyclase [Acidovorax sp. JS42]
          Length = 382

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 105/238 (44%), Gaps = 13/238 (5%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS 88
           +Y  + F    A V +    +L      P     Y+++  +++V+ S T      + + +
Sbjct: 143 LYGLVAFGAAGAVVQWWHPAWLSPDSQPPALSAAYLVM--IAVVLASSTFLTTRVHSARA 200

Query: 89  ILK----ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDID 137
            L+    EL  +  +I +L+  D L+GL N    +              + L +   D+D
Sbjct: 201 RLRSQQRELAAAVEQIRELAVRDELTGLPNRRYMLEMMRLEHARAQRSRQPLLLAQLDLD 260

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK +ND  GH  GD  +   +  +         + R GGEEF      +   +   L  
Sbjct: 261 HFKAVNDTHGHAAGDVALQSFAQTVHGCVRASDLLARWGGEEFLLLMANTHPADGTRLLE 320

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +R  +  + + +  G  + +T+S G+AE  H E  + ++ RAD ALY AK+ GRNRV
Sbjct: 321 RVRATVAATPVALPGGTQLSLTVSVGLAELAHGESTAALLQRADAALYGAKRLGRNRV 378


>gi|78358127|ref|YP_389576.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78220532|gb|ABB39881.1| diguanylate cyclase (GGDEF domain) [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 361

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 84/174 (48%), Gaps = 8/174 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L  +++ I +LSR D L+G  N    I  L         Y   LSI+  DID FK IN
Sbjct: 164 EQLKKAFSDIEELSRTDPLTGACNRRKVIEFLSAEIDRSKRYGTPLSILSLDIDRFKAIN 223

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD  +                 GR GGEEF A    ++ ++A I A  +R+ +
Sbjct: 224 DTYGHAAGDDALIAFCRVCRQQLRKTDLFGRTGGEEFVAVLPHAACRDAQISAERIRRHV 283

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           E   I  ++   +  T+S GIA     E   T++ RAD ALY AK +GRN V  
Sbjct: 284 EQIHITYNNAC-VRFTVSIGIAVHEAGENTDTLLRRADAALYRAKTAGRNTVSV 336


>gi|149180281|ref|ZP_01858786.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Bacillus sp. SG-1]
 gi|148852473|gb|EDL66618.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Bacillus sp. SG-1]
          Length = 988

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 90/185 (48%), Gaps = 11/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           S + E   +  +++ ++  D L+ L N   F   L          N++  +++ D+D FK
Sbjct: 391 SDITEQKEAEEKVNYIAHHDYLTDLPNRRKFEQELQKFIEQSKMANQEFGVMYIDMDGFK 450

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
           ++ND  GH +GDK++  +S +L+       FV R+GG+EF+       S +++  +A  +
Sbjct: 451 RVNDTLGHAIGDKLLVEISTRLLDCVPQNDFVARIGGDEFSVLIDKMHSLEQSTTIAKKI 510

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +E        G  + +T S G+A          TI+ +AD+ALY AK+ G+N    +
Sbjct: 511 VAALEV--PYKIHGYELFVTASVGVAAYPQDGHDAQTILQKADKALYRAKEMGKNNYQIY 568

Query: 259 SDIEN 263
           +   N
Sbjct: 569 NSSMN 573


>gi|240138328|ref|YP_002962800.1| putative diguanylate cyclase with GGDEF motif; putative membrane
           protein [Methylobacterium extorquens AM1]
 gi|240008297|gb|ACS39523.1| putative diguanylate cyclase with GGDEF motif; putative membrane
           protein [Methylobacterium extorquens AM1]
          Length = 417

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 119/263 (45%), Gaps = 22/263 (8%)

Query: 4   SLKDFLSIW--LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL 61
           +L   L +W  L    ++  ++ +  ++ F  +F  F+ T+  I   F      +P  G+
Sbjct: 130 ALSTALCMWEILRTPASMRLWTQYIVLLGFGGYFIAFLLTIGVIH--FANERLASPESGI 187

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
             +L +    V I +    ++             ++ ++S+L+  D L+GL N     ++
Sbjct: 188 YSLLFDLWCGVFIQVGYLAMVS----------ERAHLKLSRLADTDPLTGLANRRGLFAA 237

Query: 122 LGSYNE------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
           L           + +I+  DID+FK IND +GH  GD  +   +++L  V      V R 
Sbjct: 238 LSQRAGLSPSPPRCAILLADIDHFKAINDTYGHDGGDAALVGFAERLRGVMRKDDLVARW 297

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-IS 234
           GGEEF      +    AA +A  LRK        + +G ++ +T S G+A     E  I 
Sbjct: 298 GGEEFLVVLDQADATAAATVAERLRKSAAGQPFTV-NGAAVTVTASIGVAVVAAGEERID 356

Query: 235 TIIYRADQALYVAKKSGRNRVVC 257
             + RAD ALY AK++GRNRV  
Sbjct: 357 AALSRADAALYAAKRAGRNRVCL 379


>gi|78062448|ref|YP_372356.1| diguanylate cyclase [Burkholderia sp. 383]
 gi|77970333|gb|ABB11712.1| diguanylate cyclase [Burkholderia sp. 383]
          Length = 492

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 93/209 (44%), Gaps = 10/209 (4%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           +    +  +   +LV       ++L ++ G+ L+    + + +  L+R D L+GL N  +
Sbjct: 278 YAAWRHRAITIGALVATFGAAFIVLSFMLGTQLRRRMRAESELVMLARTDGLTGLNNRRS 337

Query: 118 F-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
           F                  S++F D+D FK  ND +GH  GD  +  ++  +      P 
Sbjct: 338 FGEVLDLEWRRARRARSVFSLLFVDVDRFKAFNDTYGHQAGDDALTAVARCIGDNIRRPA 397

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               R GGEEF      +    A  +A  +R  I+   I  +      +T S G+A    
Sbjct: 398 DTAARYGGEEFVVILPDTPATGATEIAERIRAAIDGLAIEHAESEFGRVTASIGVASWAP 457

Query: 230 KE--PISTIIYRADQALYVAKKSGRNRVV 256
           ++   + ++I  AD+ALY AK++GRN+V 
Sbjct: 458 EQEGEVESVIKAADEALYHAKETGRNKVA 486


>gi|107028920|ref|YP_626015.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
 gi|116689922|ref|YP_835545.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
 gi|105898084|gb|ABF81042.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
 gi|116648011|gb|ABK08652.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
          Length = 492

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 14/200 (7%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---- 128
           +  I +SLLLG    S L+    + + +  L+R D L+GL N  +F   L +   +    
Sbjct: 297 VAFIALSLLLG----SQLRRRMRAESELVLLARTDGLTGLSNRRSFGEVLDNEWRRARRA 352

Query: 129 ---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAA 184
               S++F D+D FK  ND +GH  GD  +A ++  +      P     R GGEEF    
Sbjct: 353 RSVFSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTAARYGGEEFVVLL 412

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQ 242
             +S+  AA +A  +R  I+   +  +      +T S G+A     +      +I  AD+
Sbjct: 413 PDTSQTGAAQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPDQEGQPDAVIKAADE 472

Query: 243 ALYVAKKSGRNRVVCFSDIE 262
           ALY AK +GRN+V      E
Sbjct: 473 ALYYAKATGRNKVAALQPAE 492


>gi|237508061|ref|ZP_04520776.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346]
 gi|235000266|gb|EEP49690.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346]
          Length = 487

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 11/204 (5%)

Query: 64  ILVENLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  + L ++++   I+++ G  +    L+    +  R+ +L+R D L+GL N  AF  +L
Sbjct: 279 IRAQRLGVLMLVFGIAIVGGTALLARELRWRRHAEMRLQRLARTDALTGLGNRRAFDENL 338

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGR 174
                        LS++F DID FK  ND++GH  GD V+  +   L   V      V R
Sbjct: 339 RSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAGDDVLREVGGCLAVNVRRAADDVAR 398

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEP 232
            GGEEF      +  + AA +A  +R+ + +  I     P   +T+S G+          
Sbjct: 399 YGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEHVRSPYARVTVSIGLVTSHEHIAHS 458

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
            +T++  AD ALY AK +GRNRV 
Sbjct: 459 DATLVKMADAALYQAKSTGRNRVC 482


>gi|218672484|ref|ZP_03522153.1| putative sensory box/GGDEF family protein [Rhizobium etli GR56]
          Length = 305

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 60/218 (27%), Positives = 104/218 (47%), Gaps = 15/218 (6%)

Query: 53  IGLTPFYGLEYILVENLSLVIISIT--ISLLLGYISGSILKELFISYNRISQLSRIDCLS 110
           IG  P    + IL+E   L ++     ++ +LG      + EL  S  +I Q++  D ++
Sbjct: 8   IGWFPPENGQSILLETRKLAVLGAGGEVTGVLG--VSRDVTELNASREKIRQMAFYDPVT 65

Query: 111 GLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            L N   F   L        S   +  ++  DID+FK +ND  GHPVGD+++  ++ +L 
Sbjct: 66  SLPNRLLFNERLQKVVSDASSQRRRTGVMLIDIDHFKVVNDTMGHPVGDQLLCQVATRLK 125

Query: 164 VVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                   V RLGG+EFA       +  +   +A  + +  + S   +  G  ++++ S 
Sbjct: 126 KSVRDLDTVARLGGDEFAILLPEIQTTDDLDWVACSILERFKES--FLLDGKEVYVSCSV 183

Query: 223 GIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           GIA        ++ ++  AD A+Y+AK+SGRN    +S
Sbjct: 184 GIAISPDDSTDVNDLVKYADSAMYLAKRSGRNSFRFYS 221


>gi|163782642|ref|ZP_02177639.1| diguanylate cyclase (GGDEF domain) [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882215|gb|EDP75722.1| diguanylate cyclase (GGDEF domain) [Hydrogenivirga sp. 128-5-R1-1]
          Length = 283

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 12/164 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
             +  L+  D L+G  N       L         Y   LS++F D+D FK++ND +GH  
Sbjct: 121 RELRFLADTDSLTGFYNRRKIEEILAKEIERSRRYGNPLSVLFIDVDNFKELNDTYGHKS 180

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  +++ +        +VGR GGEEF      +  Q A  +A  +RK +E      
Sbjct: 181 GDEVLRKIAEIIKSELRRTDYVGRFGGEEFMVILPETDSQSALRVAERIRKRVEREDF-- 238

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
               +  +T+S G+ E    + ++T+  R D+A+Y+AK+ G+NR
Sbjct: 239 ---KTGKVTVSVGVTELKEGDDLNTLFNRVDRAMYLAKERGKNR 279


>gi|163851175|ref|YP_001639218.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163662780|gb|ABY30147.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 417

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 119/263 (45%), Gaps = 22/263 (8%)

Query: 4   SLKDFLSIW--LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL 61
           +L   L +W  L    ++  ++ +  ++ F  +F  F+ T+  I   F      +P  G+
Sbjct: 130 ALSTALCMWEILRTPASMRLWTQYIVLLGFGGYFIAFLLTIGVIH--FANERLASPESGI 187

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
             +L +    V I +    ++             ++ ++S+L+  D L+GL N     ++
Sbjct: 188 YSLLFDLWCGVFIQVGYLAMVS----------ERAHLKLSRLADTDPLTGLANRRGLFAA 237

Query: 122 LGSYNE------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
           L           + +I+  DID+FK IND +GH  GD  +   +++L  V      V R 
Sbjct: 238 LSQRAGLSPSPPRCAILLADIDHFKAINDTYGHDGGDAALVGFAERLRGVMRKDDLVARW 297

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-IS 234
           GGEEF      +    AA +A  LRK        + +G ++ +T S G+A     E  I 
Sbjct: 298 GGEEFLVVLDQADATAAATVAERLRKSAAGQPFTV-NGAAVTVTASIGVAVVAAGEERID 356

Query: 235 TIIYRADQALYVAKKSGRNRVVC 257
             + RAD ALY AK++GRNRV  
Sbjct: 357 AALSRADAALYAAKRAGRNRVCL 379


>gi|170724692|ref|YP_001758718.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Shewanella woodyi ATCC 51908]
 gi|169810039|gb|ACA84623.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella woodyi ATCC 51908]
          Length = 1481

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 101/226 (44%), Gaps = 19/226 (8%)

Query: 58   FYGLEYILVENLSLVIISITISLLLG-------YIS-GSILKELFISYNRISQLSRIDCL 109
            + G    +  N +   + + IS +LG       Y++  S + E   S   + +L+  D L
Sbjct: 1000 WTGEREFICANGNNCPVWLNISTMLGGKGDIVHYVAVFSDITERKRSEAELRRLANYDVL 1059

Query: 110  SGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
            +GL N S F       I       EKL+++F D+D FK +ND+FGH +GD ++   + +L
Sbjct: 1060 TGLPNRSLFSTRLAQSIHRAEHSGEKLALIFLDLDRFKHVNDSFGHSMGDALLVEAASRL 1119

Query: 163  VVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSGPSIHITIS 221
                     + R GG+EF       S+ +    +  +L K IE +   +  G    I+ S
Sbjct: 1120 QSCIHDGHTLCRFGGDEFVILLRDVSDIDMINHICTELLKQIE-TPFELY-GREFFISTS 1177

Query: 222  AGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             G++           +I  ADQA+Y AK+ G+     +S   N+  
Sbjct: 1178 IGVSLWPDDATQAENLIKNADQAMYHAKEEGKGNFQYYSSERNSEA 1223


>gi|113971961|ref|YP_735754.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-4]
 gi|113886645|gb|ABI40697.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-4]
          Length = 1504

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 91/188 (48%), Gaps = 11/188 (5%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            + + E   +   +  L+  D L+GL N + F   L          N  ++++F D+D FK
Sbjct: 1062 TDITERKKAEEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDRFK 1121

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDL 199
             IND+ GH +GD ++  ++ +L         V RLGG+EF     G ++ +AA +++  +
Sbjct: 1122 HINDSMGHHIGDLLLKAVAHRLQSAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKV 1181

Query: 200  RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             K  +     +    S+ I+ S GI+   +  E + ++I  AD A+Y AK  GRN    +
Sbjct: 1182 LKAFQA--PFLLDDKSLTISTSIGISLYPNDAEDVDSLIKFADTAMYHAKALGRNNFQFY 1239

Query: 259  SDIENNTC 266
            ++  N   
Sbjct: 1240 TNKLNEMA 1247


>gi|114045822|ref|YP_736372.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-7]
 gi|113887264|gb|ABI41315.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-7]
          Length = 1504

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 91/188 (48%), Gaps = 11/188 (5%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            + + E   +   +  L+  D L+GL N + F   L          N  ++++F D+D FK
Sbjct: 1062 TDITERKKAEEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDRFK 1121

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDL 199
             IND+ GH +GD ++  ++ +L         V RLGG+EF     G ++ +AA +++  +
Sbjct: 1122 HINDSMGHHIGDLLLKAVAHRLQNAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKV 1181

Query: 200  RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             K  +     +    S+ I+ S GI+   +  E + ++I  AD A+Y AK  GRN    +
Sbjct: 1182 LKAFQA--PFLLDDKSLTISTSIGISLYPNDAEDVDSLIKFADTAMYHAKALGRNNFQFY 1239

Query: 259  SDIENNTC 266
            ++  N   
Sbjct: 1240 TNKLNEMA 1247


>gi|311279747|ref|YP_003941978.1| diguanylate cyclase [Enterobacter cloacae SCF1]
 gi|308748942|gb|ADO48694.1| diguanylate cyclase [Enterobacter cloacae SCF1]
          Length = 377

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 68/265 (25%), Positives = 122/265 (46%), Gaps = 18/265 (6%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVI---FIANIFLFYIGLTPFYGLEYILVENL 69
           L   +++    P T ++ F+   S++    I   FIA I+L  + ++ FY     ++   
Sbjct: 113 LIINEDMRIIFPFTALLLFTALISLYFDPRILLGFIAPIWLTVLVMSLFYTANLTVINAF 172

Query: 70  SLVIISITI----SLLLGYISGSILKELFIS--YNRISQLSRIDCLSGLLNHSAFISSLG 123
             V+++  I     +L  +   ++  +   +   +++  L+  D L+G+ N  AF S + 
Sbjct: 173 MWVLLAGLIESGRQMLNRWFLLALRHQQENADLIDQLELLANRDPLTGIANRRAFESRMD 232

Query: 124 -------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRL 175
                        +++  D+D+FK  ND +GH  GD+ +  ++  L           GR 
Sbjct: 233 QEIARHKREGGTFTLIMLDVDHFKLYNDYYGHQRGDRCLVTIAQCLARAALPVTGIPGRF 292

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPIS 234
           GGEEF      S+  EA  +A D+ + +    I   + P +  +T+S G+A         
Sbjct: 293 GGEEFVLLLPRSTPSEALDVARDIAQEMRLQNIEHLTSPVLPRVTVSLGVASWSEGMKAR 352

Query: 235 TIIYRADQALYVAKKSGRNRVVCFS 259
           T+I+ AD+ALY AK+ GRNR V F 
Sbjct: 353 TLIHNADKALYQAKQQGRNRWVLFE 377


>gi|167902129|ref|ZP_02489334.1| diguanylate cyclase [Burkholderia pseudomallei NCTC 13177]
          Length = 281

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 102/228 (44%), Gaps = 10/228 (4%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           ++A  +F    F+   G+              S   +   ++  +    G +L+EL  + 
Sbjct: 55  WLAHAVFAGGFFMLSFGVVQALMTTRSFATVYSQQDLMARLAESMARTEG-VLQELKRTN 113

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
            ++  L+  D L+G  N   FI  + S   +        S++  D+D FK INDN+GH V
Sbjct: 114 QKLEHLATTDPLTGASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFKTINDNYGHQV 173

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+     Q +V       + R+GGEEF           A+ +A  +R  I N+   I
Sbjct: 174 GDVVLRNFVRQCLVAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRTTIANASFGI 233

Query: 211 SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV 
Sbjct: 234 -DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 280


>gi|134291606|ref|YP_001115375.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
 gi|134134795|gb|ABO59120.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
          Length = 507

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 10/199 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128
           +LV       ++L  +    L+    + + +  L+R D L+GL N  +F   L     + 
Sbjct: 290 ALVGTFGAAFIVLSMVLSKQLRRRMRAESELVLLARTDGLTGLNNRRSFGEVLEREWRRA 349

Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFA 181
                  S++F D+D FK  ND +GH  GD  +A ++  +      P     R GGEEF 
Sbjct: 350 QRAHSVFSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTAARYGGEEFV 409

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYR 239
                +  Q A  +A  +R  I +  +         +T S G+A     +      +I  
Sbjct: 410 VLLPDTPRQGAIEIAERIRGAIHDLALEHVGSEYGRVTASIGMASSTPGQDGDPGALIKA 469

Query: 240 ADQALYVAKKSGRNRVVCF 258
           AD+ALY AK +GRN+V  F
Sbjct: 470 ADEALYYAKATGRNKVSTF 488


>gi|88857654|ref|ZP_01132297.1| sensory box protein [Pseudoalteromonas tunicata D2]
 gi|88820851|gb|EAR30663.1| sensory box protein [Pseudoalteromonas tunicata D2]
          Length = 725

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 56/182 (30%), Positives = 90/182 (49%), Gaps = 11/182 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNF 146
             S   I Q +  D L+GL N + F   L         Y +K ++ F D+D+FK++ND  
Sbjct: 282 HQSQQMIWQQANFDHLTGLPNRNMFTERLKQEISESKRYQQKFALFFIDLDHFKEVNDTL 341

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIEN 205
           GH  GD+++  ++++L ++      +GR+GG+EF A     ++  +   LA  L + IE 
Sbjct: 342 GHGAGDQLLIEVAERLQLILRESDTIGRIGGDEFTALIPHINQTCDIDSLAQKLIQTIEL 401

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
                  G SI I+ S GI     H E I  ++  ADQA+Y +K++GR R   F+     
Sbjct: 402 --PFYIDGESIFISASIGITLFPDHSEKIDELLKFADQAMYRSKENGRKRFSYFTFAMQE 459

Query: 265 TC 266
             
Sbjct: 460 QA 461


>gi|288961995|ref|YP_003452305.1| GGDEF domain-containing protein [Azospirillum sp. B510]
 gi|288914275|dbj|BAI75761.1| GGDEF domain-containing protein [Azospirillum sp. B510]
          Length = 262

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 56/181 (30%), Positives = 82/181 (45%), Gaps = 8/181 (4%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           +  IS  +  +       +   S+ D L+ L N    I  L              +++  
Sbjct: 79  IAKISDRMQTDTRQMARALHTASQTDPLTDLPNRRQMIERLEAELCRVGRSGGSFALIMV 138

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK++ND FGH  GD V+   +  L     T     R GGEEF      + + +A  
Sbjct: 139 DIDHFKEVNDAFGHAAGDHVLVETACLLRRNLRTHDLCARWGGEEFLILLPDAKQFQAEA 198

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +A  LR+++ N+ I    G  I IT+S G+A           I  AD ALYVAK++GRNR
Sbjct: 199 VAEKLRELVANTAIEH-QGHGIAITLSLGVAAYQPGGTADACIQAADDALYVAKRNGRNR 257

Query: 255 V 255
            
Sbjct: 258 W 258


>gi|261820424|ref|YP_003258530.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
 gi|261604437|gb|ACX86923.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
          Length = 532

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 59/168 (35%), Positives = 88/168 (52%), Gaps = 8/168 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHP 149
           L     ++S  +  D L+GLLN      ++    S + +++ +  DID+FK++ND +GH 
Sbjct: 355 LHKRIGKLSLQAHTDPLTGLLNRRGIYENVELILSKSNQVAAIVIDIDHFKRVNDTYGHN 414

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD VI  L+D +         + R GGEEF A    +  ++A  +A  LRK +E   + 
Sbjct: 415 VGDDVIRLLADNIKQGSRESDLICRTGGEEFLALLPDTDMKQATEIAERLRKKVEKMPLP 474

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           I      +ITIS G+       E I +++  AD ALY AK  GRNRVV
Sbjct: 475 IPE----NITISLGVTCFTPGTEQIDSVLKTADDALYQAKHEGRNRVV 518


>gi|260221572|emb|CBA30270.1| hypothetical protein Csp_C22710 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 409

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 76/307 (24%), Positives = 129/307 (42%), Gaps = 60/307 (19%)

Query: 9   LSIWLC------HEKNLESFSPHTFMIYFSIFF---------------SIFIATVIFIAN 47
           L  W C      H      + P   M    +F                  FIA ++    
Sbjct: 104 LCAWACRPLEHRHRSWSGRWLPVLAMAVCIVFAMLITAIDQWVTPAITPFFIACIVTSLT 163

Query: 48  IFLFYIGLTPFYGLEYIL-------------------VENLSLVIISITISLLLGYISGS 88
           I+L        +G+ ++L                   +  L++ +I   +S+L+     +
Sbjct: 164 IYLRPHVAAALFGVAFVLFSTLIGMTQHNPEMLLSNRINGLAVCVIGFCLSVLMWRKFTT 223

Query: 89  IL----------KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSI 131
           I            EL +    + +L+R D L+GL N + F+                 +I
Sbjct: 224 IAVQKHQLEKAHTELQLKQRELERLTRQDGLTGLFNRNTFVELSTNELKRAKRQGSATTI 283

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  D+D+FK+IND +GHP GD V+  ++  +V    +   VGRLGGEEF      ++ + 
Sbjct: 284 LLLDLDHFKRINDTWGHPAGDVVLRHVAQTMVNSVRSTDLVGRLGGEEFIVLLPHTTAEA 343

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKK 249
           +  +A  +R+ +E S I    G  I +T S G++    +E     ++   AD+ALY+AK+
Sbjct: 344 SRKIAEKIRQRLEVSDIRW-EGKRIAVTASIGLSGTTAEESREFDSLYTEADKALYLAKQ 402

Query: 250 SGRNRVV 256
            GRNRV+
Sbjct: 403 RGRNRVI 409


>gi|90021239|ref|YP_527066.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
 gi|89950839|gb|ABD80854.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
          Length = 823

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 12/187 (6%)

Query: 83  GYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           GY+ S   + EL  + + + +L+  D L+ L N   F   L          +  ++++  
Sbjct: 371 GYVGSVLDVTELKNAQHELEKLAYYDPLTHLPNRRYFKDYLVKQLQLAKEEDSIMAVLLV 430

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAA 193
           D+D FK+IND  GH  GD +++ L+ ++     +   V R+GG+EF       SS  E  
Sbjct: 431 DLDNFKRINDTLGHDAGDILLSVLAGRIKQRLHSQDLVARMGGDEFYLVLRNLSSLAEVE 490

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252
            +   +R ++  S I I +   + IT S G+A      +    ++  AD ALY AK  GR
Sbjct: 491 KITKRVRSVLA-SPIRIKN-HFVEITASIGVASYPENCDTPEELMRNADIALYKAKGDGR 548

Query: 253 NRVVCFS 259
           NRV  FS
Sbjct: 549 NRVAYFS 555


>gi|253997291|ref|YP_003049355.1| PAS/PAC sensor-containing diguanylate cyclase [Methylotenera
           mobilis JLW8]
 gi|253983970|gb|ACT48828.1| diguanylate cyclase with PAS/PAC sensor [Methylotenera mobilis
           JLW8]
          Length = 548

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 92/176 (52%), Gaps = 8/176 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           +    +    ++Q + ID L+ L N   F+            Y + +++   DID+FK+I
Sbjct: 371 IHSRKLLELELNQKAHIDYLTELNNRGHFMEQAEKELSRSQRYQKDMAMFMMDIDFFKKI 430

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+ GH +GD V+  L+D           +GR+GGEEFA     ++  EA  +A  LR  
Sbjct: 431 NDSHGHKIGDIVLKKLADVCRQTLREVDIIGRIGGEEFAILLPETNRAEALEVAERLRLA 490

Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +S++ +  G  +  T+S G++      + I  ++ RADQALY AK+SGRNRV  
Sbjct: 491 VADSKVPMKDGLPVQYTVSIGVSSVASADDNIDMLLSRADQALYQAKQSGRNRVCA 546


>gi|160900354|ref|YP_001565936.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Delftia acidovorans SPH-1]
 gi|160365938|gb|ABX37551.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Delftia acidovorans SPH-1]
          Length = 617

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 10/182 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQI 142
           + +  +   RI  ++  D L+GL N +          E        L+++F D+D+FK +
Sbjct: 178 IADRKLDQERIYWMAHYDALTGLPNRTLLAERSARAIELAKANDTPLAVMFLDLDHFKHV 237

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+ GH VGD ++  ++ +L  V      V R+GG+EF     G++ Q AA +A  L++ 
Sbjct: 238 NDSLGHRVGDALLVEIARRLRAVVRDRDTVARIGGDEFVLLLPGANAQGAARVAGKLQEA 297

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             + Q        + I  S GIA        I ++   AD A+Y AK++GRN    F+  
Sbjct: 298 --SRQAYQIDRHELTIAPSIGIALYPRDGHDIDSLTQAADAAMYHAKQAGRNTYRFFTPQ 355

Query: 262 EN 263
             
Sbjct: 356 MQ 357


>gi|90020041|ref|YP_525868.1| diguanylate cyclase [Saccharophagus degradans 2-40]
 gi|89949641|gb|ABD79656.1| diguanylate cyclase [Saccharophagus degradans 2-40]
          Length = 319

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 64/219 (29%), Positives = 108/219 (49%), Gaps = 17/219 (7%)

Query: 57  PFYGLEYILVENLSLVIISIT------ISLLLGYISGSILKELFI--SYNRISQLSRIDC 108
           P  G+   + +N +++ +  T      I L++  ++   +  L I  +  ++ ++SR D 
Sbjct: 101 PVTGIADFMYQNSTIIPLKDTRGKVEHICLIVYDVTEVAVNRLQIQAANLQLHEISRTDG 160

Query: 109 LSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GLLN   +             +    S+V FDID+FK IND++GHP GD+VI   +  
Sbjct: 161 LTGLLNRKTWELDAEQEYKRFKRHEHPCSLVMFDIDHFKNINDSYGHPAGDEVIRQTAAA 220

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +          GR GGEEF      +  + A ++A  +R  I+   ++     +I  T+S
Sbjct: 221 VKSCIRDIDIAGRYGGEEFTIVLSDTDTEGALVVAERIRNQIQELTVHYED-FAIQFTVS 279

Query: 222 AGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFS 259
            G+A+   +    T  I  AD+ALY AKK+GRN  V ++
Sbjct: 280 LGVAQLTQQMTNRTAWIDCADKALYQAKKNGRNNSVVYT 318


>gi|167743862|ref|ZP_02416636.1| two component system fusin protein [Burkholderia pseudomallei 14]
 gi|167821049|ref|ZP_02452729.1| two component system fusin protein [Burkholderia pseudomallei 91]
 gi|167829413|ref|ZP_02460884.1| two component system fusin protein [Burkholderia pseudomallei 9]
 gi|167899491|ref|ZP_02486892.1| two component system fusin protein [Burkholderia pseudomallei 7894]
 gi|167916166|ref|ZP_02503257.1| two component system fusin protein [Burkholderia pseudomallei 112]
 gi|167924002|ref|ZP_02511093.1| two component system fusin protein [Burkholderia pseudomallei
           BCC215]
 gi|226197006|ref|ZP_03792584.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9]
 gi|254184667|ref|ZP_04891256.1| diguanylate cyclase [Burkholderia pseudomallei 1655]
 gi|254185886|ref|ZP_04892404.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237]
 gi|254194156|ref|ZP_04900588.1| diguanylate cyclase [Burkholderia pseudomallei S13]
 gi|254300943|ref|ZP_04968387.1| diguanylate cyclase [Burkholderia pseudomallei 406e]
 gi|157811534|gb|EDO88704.1| diguanylate cyclase [Burkholderia pseudomallei 406e]
 gi|157933572|gb|EDO89242.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237]
 gi|169650907|gb|EDS83600.1| diguanylate cyclase [Burkholderia pseudomallei S13]
 gi|184215259|gb|EDU12240.1| diguanylate cyclase [Burkholderia pseudomallei 1655]
 gi|225930989|gb|EEH26998.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9]
          Length = 487

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 11/204 (5%)

Query: 64  ILVENLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  + L ++++   I+++ G  +    L+    +  R+ +L+R D L+GL N  AF  +L
Sbjct: 279 IRAQRLGVLMLVFGIAIVGGTALLARELRWRRHAEMRLQRLARTDALTGLGNRRAFDENL 338

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGR 174
                        LS++F DID FK  ND++GH  GD V+  +   L   V      V R
Sbjct: 339 RSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAGDDVLREVGGCLAVNVRRAADDVAR 398

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEP 232
            GGEEF      +  + AA +A  +R+ + +  I     P   +T+S G+          
Sbjct: 399 YGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEHVRSPYARVTVSIGLVTSHEHIAHS 458

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
            +T++  AD ALY AK +GRNRV 
Sbjct: 459 DATLVKMADAALYQAKSTGRNRVC 482


>gi|171319506|ref|ZP_02908608.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
 gi|171095278|gb|EDT40266.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
          Length = 492

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 16/204 (7%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           LV       I++++ L      G+ L+    + + +  L+R D L+GL N  +F   L  
Sbjct: 291 LVATFGAAFIAVSVML------GTQLRRRMRAESELVLLARTDGLTGLNNRRSFGEVLDR 344

Query: 125 YNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLG 176
              +        S++F D+D FK  ND +GH  GD  +A ++  +      P     R G
Sbjct: 345 EWRRARRSRSVFSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTAARYG 404

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-- 234
           GEEF      + E  AA +A  +R  I+   +  +     H+T S G+A    +E     
Sbjct: 405 GEEFVVLLPDTPETGAAQIAERIRAAIDELALEHAGSEHGHVTASIGLASWTPEEDEEAG 464

Query: 235 TIIYRADQALYVAKKSGRNRVVCF 258
           ++I  AD+ALY AK +GRN+V  F
Sbjct: 465 SVIKAADEALYYAKAAGRNKVAAF 488


>gi|254785359|ref|YP_003072788.1| GGDEF domain-containing protein [Teredinibacter turnerae T7901]
 gi|237685923|gb|ACR13187.1| GGDEF domain protein [Teredinibacter turnerae T7901]
          Length = 811

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 51/200 (25%), Positives = 92/200 (46%), Gaps = 16/200 (8%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVF 133
           ++  +  S + EL  +  ++  ++  D L+ L N S  +  L     K        +++F
Sbjct: 351 VVALVVSSDITELKKAQAQMEHMAYHDALTDLPNRSYLVERLEEEIRKSDRQNFFGALLF 410

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ--- 190
            D+D FK IND+ GHP GD V+  ++ +L+ +      V RLGG+EF        E    
Sbjct: 411 IDLDQFKYINDSLGHPAGDGVLKHVAQRLMAIASENDVVVRLGGDEFVVVLTNLGEDISG 470

Query: 191 ---EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYV 246
              +A  +A  +R  +  S+ +      +H+T S GI     +E  +  ++  AD A+Y 
Sbjct: 471 AILKAEEIAERIRSHV--SEPHYYHDLELHVTCSVGIVIYPDEEAGVHELLRFADTAMYQ 528

Query: 247 AKKSGRNRVVCFSDIENNTC 266
            K+ GR+ +  F+    +  
Sbjct: 529 VKEQGRDAIQFFNKYMADKA 548


>gi|167907804|ref|ZP_02495009.1| two component system fusin protein [Burkholderia pseudomallei NCTC
           13177]
          Length = 487

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 11/204 (5%)

Query: 64  ILVENLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  + L ++++   I+++ G  +    L+    +  R+ +L+R D L+GL N  AF  +L
Sbjct: 279 IRAQRLGVLMLVFGIAIVGGTALLARELRWRRHAEMRLQRLARTDALTGLGNRRAFDENL 338

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGR 174
                        LS++F DID FK  ND++GH  GD V+  +   L   V      V R
Sbjct: 339 RSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAGDDVLREVGGCLAVNVRRAADDVAR 398

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEP 232
            GGEEF      +  + AA +A  +R+ + +  I     P   +T+S G+          
Sbjct: 399 YGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEHVRSPYARVTVSIGLVTSHEHIAHS 458

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
            +T++  AD ALY AK +GRNRV 
Sbjct: 459 DATLVKMADAALYQAKSTGRNRVC 482


>gi|121997174|ref|YP_001001961.1| response regulator receiver modulated diguanylate cyclase
           [Halorhodospira halophila SL1]
 gi|121588579|gb|ABM61159.1| response regulator receiver modulated diguanylate cyclase
           [Halorhodospira halophila SL1]
          Length = 308

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 12/178 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +L    + + +LS+ D L+ L N       L          +  LS++  DID+FK  ND
Sbjct: 129 DLKRKTDALERLSQRDGLTDLPNRRVLDRQLPEEWSRCQRGDTPLSVIMMDIDHFKPYND 188

Query: 145 NFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           ++GH  GD+ +  ++  L  V   T   V R GGEEF A    +   +A  +A   R  +
Sbjct: 189 HYGHGAGDECLRRVARVLANVPSRTTDLVARYGGEEFIALLPYTDAPDAWQMAERFRAAV 248

Query: 204 ENSQINI-SSGPSIHITISAGIAERCHK---EPISTIIYRADQALYVAKKSGRNRVVC 257
              Q+    S     IT+S G+A        +    ++  ADQALY AKK+GRNRV  
Sbjct: 249 AALQLPHGHSSTDGIITMSVGVASHTADRPYDSPEQLLEAADQALYAAKKAGRNRVQA 306


>gi|153009132|ref|YP_001370347.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188]
 gi|151561020|gb|ABS14518.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188]
          Length = 263

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 71/261 (27%), Positives = 111/261 (42%), Gaps = 29/261 (11%)

Query: 23  SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL--------SLVII 74
           S   F I   + F   I  +++ A + +  +   P     Y LV  L         ++I 
Sbjct: 6   SERAFFILIVLMFG--IGLLLYQARVDIGQLQTLPLDAGAYELVSRLDQLNHVTIWVLIA 63

Query: 75  SITISLLLGYISGS-----------ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           +I   L L Y               I ++L      +   +  D L+G+ N   F  +L 
Sbjct: 64  TIACGLFLIYPQIRTDALDHGKLQVITQDLSERSQTLEHAALTDSLTGMQNRRYFDEALK 123

Query: 124 SY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
            Y          + ++  D+D+FK +ND +GH +GD V+  ++  L         V RLG
Sbjct: 124 EYLVQFDRIQRPVGLMIIDLDHFKAVNDTYGHDIGDVVLQEVARCLKDYTRYHDVVARLG 183

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236
           GEEFA  A     +    LAN +RK I   +I++     + +T+S G+A    +E    +
Sbjct: 184 GEEFAVLAPNMDAELMIKLANRIRKAISTLEIDLGD-EKLGVTVSIGLAIWDRRETSKDL 242

Query: 237 IYRADQALYVAKKSGRNRVVC 257
             RAD+ LY AK  GRNRV  
Sbjct: 243 YRRADKMLYAAKNMGRNRVCA 263


>gi|159185045|ref|NP_355056.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
 gi|159140319|gb|AAK87841.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
          Length = 269

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 75/239 (31%), Positives = 116/239 (48%), Gaps = 9/239 (3%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPF--YGLEYILVENLSLVI-----ISITISLLLGYISG 87
           FS+ IA ++ +  I +   GLT    +GL   L   + L +     ++ T++LL+ +++ 
Sbjct: 31  FSVRIACLVTLIVIVMCTGGLTLLAQFGLVTDLFNGIMLSVTLGGAVAFTVTLLVCWLNA 90

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
             ++ L  S+ R   LS  D L+GL N     ++         + F DID+FK +ND + 
Sbjct: 91  REVQILVQSHERFLHLSHTDALTGLSNRLGLYAACAELGSDYCVAFLDIDHFKAVNDGYS 150

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD VIA ++ ++   F  P  V RLGGEEF      +S      +   +R  IE + 
Sbjct: 151 HLVGDLVIASVARRIKEHFDPPAHVARLGGEEFVVVQ-ETSPLAFLQMCERVRAAIETTP 209

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           +       I +TIS G+A R   E    +++ AD ALY AK  GRNRV     +E    
Sbjct: 210 VAYQD-LRITVTISIGVAFRGDAEIFDKVMHNADLALYRAKGGGRNRVCMSGHVERRQA 267


>gi|15599528|ref|NP_253022.1| hypothetical protein PA4332 [Pseudomonas aeruginosa PAO1]
 gi|254239001|ref|ZP_04932324.1| hypothetical protein PACG_05175 [Pseudomonas aeruginosa C3719]
 gi|9950557|gb|AAG07720.1|AE004849_7 hypothetical protein PA4332 [Pseudomonas aeruginosa PAO1]
 gi|126170932|gb|EAZ56443.1| hypothetical protein PACG_05175 [Pseudomonas aeruginosa C3719]
          Length = 487

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 65/281 (23%), Positives = 117/281 (41%), Gaps = 40/281 (14%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYF--SIFFSIF-IATVIFIANIFLFYIGLTPFYGLEYI 64
           +L+ +L H  +L      TFM+++  ++ F +F +   +F     L +I  +  Y +E +
Sbjct: 205 WLTYFLYHVDSLRG----TFMVFYVLALLFGVFQLPPRVFARCAALAFIAFSGIYLVEAL 260

Query: 65  ----------LVENLSLVIISITISLLLGYISGSILKELFISY-------------NRIS 101
                      ++ L + I+ + +SL   YI     +     Y              ++ 
Sbjct: 261 QQRLELPGRAALQVLVMFIVMVWLSLFASYIQAMRQRMRQRRYALQAHQDTLRGMMRQLE 320

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            L   D L+GL N   F+            N +  +   D+D+FK+IND  GH  GD+V+
Sbjct: 321 DLVATDELTGLFNRRHFMRMASRALEDLLPNRQHGLALIDLDHFKRINDRHGHAAGDRVL 380

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +            + R GGEEF      +  ++       LR   + ++     G +
Sbjct: 381 QTFAAVARSCLRDGDVLARYGGEEFVLLLPHADAEQLESCCERLRLAFQQAE---PVGVT 437

Query: 216 I-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  +++S G+      + +   + RADQALY AK+ GRNR 
Sbjct: 438 VDTLSLSVGMTLLYADDDLDEALQRADQALYRAKRGGRNRC 478


>gi|127514309|ref|YP_001095506.1| diguanylate cyclase [Shewanella loihica PV-4]
 gi|126639604|gb|ABO25247.1| diguanylate cyclase [Shewanella loihica PV-4]
          Length = 622

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 11/180 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           L+EL  +  ++++ + +D L+G+ N +AF   L             L+I+  DID FK I
Sbjct: 439 LRELNEANQKLTEQNTVDSLTGVKNRAAFEKRLQAEGRLSRRQQTPLAILMIDIDRFKAI 498

Query: 143 NDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD+ +  ++  L   +      V R GGEEFA     +S   A  +A  +R 
Sbjct: 499 NDTYGHLAGDQALKTIAQALKEKLRRPSDLVSRFGGEEFAMILPNTSCDGALQVAELMRS 558

Query: 202 IIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +    +      +I +TIS GI        +    ++ +AD+ALY AK  GRNRV  +S
Sbjct: 559 TVSELPLAWGE-QAIPLTISIGICAEVIVDDQHTQLLVDQADKALYRAKHEGRNRVCVYS 617


>gi|311694422|gb|ADP97295.1| diguanylate cyclase (GGDEF domain) [marine bacterium HP15]
          Length = 308

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 85/169 (50%), Gaps = 8/169 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I Q S  D L+G+ N  A   +L         + E  S+V  D+D+FK +ND  GH VGD
Sbjct: 140 IEQASLTDSLTGIPNKRALDDALQRSSLLSERHGEPYSLVLCDLDHFKTVNDTHGHVVGD 199

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++   + ++     T   V R GGEEFA     +SEQ+A  +A  +R+ I   +++   
Sbjct: 200 HLLQLAACEIEKSIRTSDSVYRFGGEEFAILLPHTSEQDARDVAERVREAIAAIRVD-GG 258

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              + +T S G+A    KE     + RAD+ALY AK  GRN    F+ I
Sbjct: 259 EKELKVTTSCGVATFLPKEAPQAWLARADEALYRAKHQGRNCTRVFATI 307


>gi|144898353|emb|CAM75217.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 961

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 11/189 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDI 136
            +    + E   + +R+  ++  D L+ L N                    +++++F D+
Sbjct: 514 LVVVRDITERKNAQDRLEFMAHHDPLTELPNRLLLQDRVDRAIALAEREGRRVALMFLDL 573

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAIL 195
           D FK +ND+ GH  GD+++  ++ +L         + RLGG+EF               +
Sbjct: 574 DQFKTVNDSLGHAAGDRLLKDVAWRLRQCVRESDTIARLGGDEFVIVLNAVRDADGVVEV 633

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A  + K +         G  +  T+S GIA          T++ +AD A+Y AK+SGR+ 
Sbjct: 634 AEKIHKSVA--PPITIEGQEVTSTLSMGIAMFPEDGHDFDTLMKKADAAMYHAKESGRST 691

Query: 255 VVCFSDIEN 263
              F+   N
Sbjct: 692 YRFFAARMN 700


>gi|120601468|ref|YP_965868.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris
           DP4]
 gi|120561697|gb|ABM27441.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris
           DP4]
          Length = 572

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 9/183 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDI 136
           Y     +         + +++ +D L+G+ N + F+ +L    ++        S++  D+
Sbjct: 373 YAVVRDVTHQKRQEVELRRMASMDALTGVSNRATFMETLADMMQRCCHDRAVASVLVMDV 432

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK +ND +GH VGD+V+  L   +V +  T   VGRLGGEEF     G   + A  +A
Sbjct: 433 DNFKLVNDTWGHAVGDEVLRRLGRAMVPLLRTVDTVGRLGGEEFGVLLPGVGPEAACCVA 492

Query: 197 NDLRKIIENSQINISS--GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             LR  I   ++      G ++ +T+S G+A       ++ ++  AD+ALY AK SGR+R
Sbjct: 493 ERLRAAIAAMEVPCDDGRGEALRVTVSVGVASCPPYHSVTEVLRAADKALYRAKASGRDR 552

Query: 255 VVC 257
           VVC
Sbjct: 553 VVC 555


>gi|239831922|ref|ZP_04680251.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239824189|gb|EEQ95757.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 275

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 75/244 (30%), Positives = 118/244 (48%), Gaps = 14/244 (5%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI 85
           T ++  ++     +A  +   +I  F  G TP      I+  +LS  I + T    L YI
Sbjct: 16  TALVKAALITLSVVAFSLGATSIVAFSAGATP-----GIIALSLSAGIPAATAFPSLAYI 70

Query: 86  SGS------ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDI 136
                       +L  ++  +   SRID ++GLLN  A   ++    S  E  +++  D 
Sbjct: 71  FHQHGKLKDAYLQLERAHVELQARSRIDHMTGLLNREALFEAMKISRSRIETGTLLVIDA 130

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK IND FGH VGD+ +  ++  L  V      VGR+GGEEF     G+S +    +A
Sbjct: 131 DHFKAINDTFGHGVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGMRVA 190

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +EN+  + +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV
Sbjct: 191 QRIRAEVENTPFHTTEYQVYPLTISIGVASAPKNETNSQVLSRADRCLYMAKQRGRNCVV 250

Query: 257 CFSD 260
              +
Sbjct: 251 FDEE 254


>gi|222083128|ref|YP_002542493.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
 gi|221727807|gb|ACM30896.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
          Length = 578

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 88/180 (48%), Gaps = 10/180 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           +I  EL  +  R+  L+  D L+GL N   F ++L             L ++  D+D+FK
Sbjct: 391 AIEDELQDANRRLQALAEQDGLTGLANRRFFDNALLREAGRACQDKTSLGLLMIDVDWFK 450

Query: 141 QINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GHP GD+ +  +   +   V        R GGEEFAA    + E  AA +A  +
Sbjct: 451 AFNDCYGHPAGDECLKRIGGTIQKIVSRPGDVAARYGGEEFAALLPDTDEPAAAAIAEQI 510

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
           R+ +    I     P+   TIS G A          +T+++ AD+ALY AK++GRNRV C
Sbjct: 511 RQAVLELAIEHRVSPNQVATISVGAAALTEGAVTEPATLLHNADRALYRAKENGRNRVAC 570


>gi|167724922|ref|ZP_02408158.1| two component system fusin protein [Burkholderia pseudomallei DM98]
          Length = 487

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 11/204 (5%)

Query: 64  ILVENLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  + L ++++   I+++ G  +    L+    +  R+ +L+R D L+GL N  AF  +L
Sbjct: 279 IRAQRLGVLMLVFGIAIVGGTALLARELRWRRHAEMRLQRLARTDALTGLGNRRAFDENL 338

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGR 174
                        LS++F DID FK  ND++GH  GD V+  +   L   V      V R
Sbjct: 339 RSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAGDDVLREVGGCLAVNVRRAADDVAR 398

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEP 232
            GGEEF      +  + AA +A  +R+ + +  I     P   +T+S G+          
Sbjct: 399 YGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEHVRSPYARVTVSIGLVTSHEHIAHS 458

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
            +T++  AD ALY AK +GRNRV 
Sbjct: 459 DATLVKMADAALYQAKSTGRNRVC 482


>gi|126457290|ref|YP_001076708.1| diguanylate cyclase [Burkholderia pseudomallei 1106a]
 gi|167850887|ref|ZP_02476395.1| two component system fusin protein [Burkholderia pseudomallei
           B7210]
 gi|242313189|ref|ZP_04812206.1| diguanylate cyclase [Burkholderia pseudomallei 1106b]
 gi|126231058|gb|ABN94471.1| diguanylate cyclase [Burkholderia pseudomallei 1106a]
 gi|242136428|gb|EES22831.1| diguanylate cyclase [Burkholderia pseudomallei 1106b]
          Length = 487

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 11/204 (5%)

Query: 64  ILVENLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  + L ++++   I+++ G  +    L+    +  R+ +L+R D L+GL N  AF  +L
Sbjct: 279 IRAQRLGVLMLVFGIAIVGGTALLARELRWRRHAEMRLQRLARTDALTGLGNRRAFDENL 338

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGR 174
                        LS++F DID FK  ND++GH  GD V+  +   L   V      V R
Sbjct: 339 RSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAGDDVLREVGGCLAVNVRRAADDVAR 398

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEP 232
            GGEEF      +  + AA +A  +R+ + +  I     P   +T+S G+          
Sbjct: 399 YGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEHVRSPYARVTVSIGLVTSHEHIAHS 458

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
            +T++  AD ALY AK +GRNRV 
Sbjct: 459 DATLVKMADAALYQAKSTGRNRVC 482


>gi|53716837|ref|YP_104938.1| GGDEF domain-containing protein [Burkholderia mallei ATCC 23344]
 gi|121597687|ref|YP_990855.1| diguanylate cyclase [Burkholderia mallei SAVP1]
 gi|124381348|ref|YP_001025336.1| diguanylate cyclase [Burkholderia mallei NCTC 10229]
 gi|126447734|ref|YP_001077321.1| diguanylate cyclase [Burkholderia mallei NCTC 10247]
 gi|238562704|ref|ZP_00440005.2| diguanylate cyclase [Burkholderia mallei GB8 horse 4]
 gi|254175962|ref|ZP_04882620.1| diguanylate cyclase [Burkholderia mallei ATCC 10399]
 gi|254202856|ref|ZP_04909218.1| diguanylate cyclase [Burkholderia mallei FMH]
 gi|254208195|ref|ZP_04914544.1| diguanylate cyclase [Burkholderia mallei JHU]
 gi|254359492|ref|ZP_04975764.1| diguanylate cyclase [Burkholderia mallei 2002721280]
 gi|52422807|gb|AAU46377.1| GGDEF domain protein [Burkholderia mallei ATCC 23344]
 gi|121225485|gb|ABM49016.1| diguanylate cyclase [Burkholderia mallei SAVP1]
 gi|126240588|gb|ABO03700.1| diguanylate cyclase [Burkholderia mallei NCTC 10247]
 gi|147745901|gb|EDK52979.1| diguanylate cyclase [Burkholderia mallei FMH]
 gi|147750882|gb|EDK57950.1| diguanylate cyclase [Burkholderia mallei JHU]
 gi|148028679|gb|EDK86639.1| diguanylate cyclase [Burkholderia mallei 2002721280]
 gi|160697004|gb|EDP86974.1| diguanylate cyclase [Burkholderia mallei ATCC 10399]
 gi|238522109|gb|EEP85555.1| diguanylate cyclase [Burkholderia mallei GB8 horse 4]
 gi|261826268|gb|ABM98990.2| diguanylate cyclase [Burkholderia mallei NCTC 10229]
          Length = 487

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 11/204 (5%)

Query: 64  ILVENLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  + L ++++   I+++ G  +    L+    +  R+ +L+R D L+GL N  AF  +L
Sbjct: 279 IRAQRLGVLMLVFGIAIVGGTALLARELRWRRHAEMRLQRLARTDALTGLGNRRAFDENL 338

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGR 174
                        LS++F DID FK  ND++GH  GD V+  +   L   V      V R
Sbjct: 339 RSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAGDDVLREVGGCLAVNVRRAADDVAR 398

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEP 232
            GGEEF      +  + AA +A  +R+ + +  I     P   +T+S G+          
Sbjct: 399 YGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEHVRSPYARVTVSIGLVTSHEHIAHS 458

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
            +T++  AD ALY AK +GRNRV 
Sbjct: 459 DATLVKMADAALYQAKSTGRNRVC 482


>gi|254241535|ref|ZP_04934857.1| hypothetical protein PA2G_02235 [Pseudomonas aeruginosa 2192]
 gi|126194913|gb|EAZ58976.1| hypothetical protein PA2G_02235 [Pseudomonas aeruginosa 2192]
          Length = 525

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 8/174 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            +         +  L+  D L+GL N  +F+            +      +  DID+FK 
Sbjct: 346 DISRRKAMEQELRLLASTDTLTGLHNRHSFLHQAELMLKAAERFRHPCVALMLDIDHFKN 405

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD+ +  +++ L         +GRLGGEEFAA     S  +A  +A  LR 
Sbjct: 406 INDSHGHLTGDRALQRVAETLRQGLREVDLLGRLGGEEFAALLPEVSLDQALDVAERLRA 465

Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
            +E  +++   G  + +T+S G+A R    + + +++ RAD ALY AK  GRNR
Sbjct: 466 GVEALRVSNPDGEPLRMTVSIGVALRRDAGDDLESLLVRADSALYQAKSGGRNR 519


>gi|114569873|ref|YP_756553.1| diguanylate cyclase [Maricaulis maris MCS10]
 gi|114340335|gb|ABI65615.1| diguanylate cyclase [Maricaulis maris MCS10]
          Length = 350

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 88/177 (49%), Gaps = 9/177 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQI 142
           + +L  +  ++ + +  D L+G+ N   F  SL           + LS++  DID+FK+ 
Sbjct: 163 VTQLRTNLEKVREEAMTDALTGIANRKRFDESLRRARRDADTKKQPLSLILCDIDFFKRF 222

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD++I F++  L    G    V R GGEEF      ++   A  +A  +RK 
Sbjct: 223 NDTWGHQTGDQIIRFVAGCLTRHAGENHLVARYGGEEFGIVMPNTAPNVAEQVAEKIRKT 282

Query: 203 IENSQINISSGPS--IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +E+ ++   S      +IT+S GIA     E I  +I R+D  LY +K  GRNR   
Sbjct: 283 VESKKLLRKSTNEDLGNITVSLGIATYHEGESIEELIERSDTNLYRSKTEGRNRTTV 339


>gi|114561602|ref|YP_749115.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella frigidimarina NCIMB 400]
 gi|114332895|gb|ABI70277.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella frigidimarina NCIMB 400]
          Length = 1486

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 87/188 (46%), Gaps = 11/188 (5%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            + +     +   +  L+  D L+GL N + F   L          N  ++++F D+D FK
Sbjct: 1039 TDITARKKAEEDLRVLANFDPLTGLPNRTLFQDRLNQAVTKAHRANSIVALLFLDLDRFK 1098

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDL 199
             IND+ GH +GD ++  ++ +L         V RLGG+EF     G ++ +AA I+A  +
Sbjct: 1099 HINDSMGHHIGDLLLKAVAHRLQNAVRDGDTVARLGGDEFTIILEGVAKTKAATIIAEKV 1158

Query: 200  RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
                +     +     + I+ S GI+      +  +++I  AD A+Y AK  GRN    +
Sbjct: 1159 LHAFQT--PFLLDDKILTISPSIGISLYPEDADDTTSLIKYADTAMYHAKSLGRNNFQFY 1216

Query: 259  SDIENNTC 266
            ++  N   
Sbjct: 1217 TEQLNQYA 1224


>gi|330501786|ref|YP_004378655.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
 gi|328916072|gb|AEB56903.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
          Length = 1376

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 16/200 (8%)

Query: 81   LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
            L+ Y+   S + E   S  RI +L+  D L+ L N + F   L         +NE + ++
Sbjct: 917  LVSYVCFFSDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERHNEWVVLM 976

Query: 133  FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE- 191
            F D+D FK IND+ GH  GD+++  ++ +L         V R+GG+EF       + +E 
Sbjct: 977  FLDLDRFKPINDSLGHAAGDRMLKDVAVRLSACVDGDDTVARMGGDEFTLLLQPRATREG 1036

Query: 192  ----AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYV 246
                A  +A  +   +   +  +  G    +T S GIA        +S ++  AD A+Y 
Sbjct: 1037 ALNRAIHVAEQILSSLA--RPFVLEGREFFVTASIGIALAPQDGNELSQLMKNADTAMYH 1094

Query: 247  AKKSGRNRVVCFSDIENNTC 266
            AK+ G+N    +    N + 
Sbjct: 1095 AKERGKNNFQFYQADMNASA 1114


>gi|312879136|ref|ZP_07738936.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM
           12260]
 gi|310782427|gb|EFQ22825.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM
           12260]
          Length = 662

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 12/204 (5%)

Query: 65  LVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           L   +++V     +  L+GY      + E   +  R+  L+R D L+ L N + F   L 
Sbjct: 443 LWTEVNVVPHRDGVGKLVGYHGVTRDISERKRTAERMEHLARHDPLTDLPNRALFFDRLD 502

Query: 124 -------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                      +L+++F D+D FK +ND FGH VGD ++   + ++         VGR+G
Sbjct: 503 VALALSKRNGTRLALMFVDLDRFKPVNDTFGHAVGDVLLREAAGRMRACIRGSDTVGRIG 562

Query: 177 GEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIS 234
           G+EF         Q+A  ++A  LR+ +   +     G  I I+ S GIA          
Sbjct: 563 GDEFVVLLPAVETQKAPLVVAEKLRRALA--RPFEIDGRRIGISCSIGIAIAPDDGCDPI 620

Query: 235 TIIYRADQALYVAKKSGRNRVVCF 258
            +   AD A+Y+AK+ G + V  F
Sbjct: 621 ELAKNADMAMYLAKQQGGDAVRFF 644


>gi|330821348|ref|YP_004350210.1| GGDEF domain protein [Burkholderia gladioli BSR3]
 gi|327373343|gb|AEA64698.1| GGDEF domain protein [Burkholderia gladioli BSR3]
          Length = 509

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 10/197 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------- 122
           ++V++   +      +    L+    +  ++ +L R D L+GL N  +F ++L       
Sbjct: 305 AIVLVFSLVVAAGSVLLAHELRRRQRAEEQLRRLVRTDALTGLGNRRSFDTTLHVEWLRT 364

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFA 181
                 LS++F DID FK  ND++GHP GD+V+  +   L          V R GGEEF 
Sbjct: 365 QRTGRPLSLLFVDIDQFKAYNDHYGHPAGDEVLREVGRVLTRCAQRPSDDVARYGGEEFV 424

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI--IYR 239
                +  + AA     +R+ I +  I  ++     +T+S GI         S +  +  
Sbjct: 425 VTLPDTDARGAAQFGERVRRSIYDLAIPHAASHYGRVTVSIGIVTSGEAAASSDVAFVNL 484

Query: 240 ADQALYVAKKSGRNRVV 256
           AD ALY AK +GRNR+ 
Sbjct: 485 ADTALYHAKTAGRNRIC 501


>gi|94500398|ref|ZP_01306930.1| hypothetical protein RED65_16276 [Oceanobacter sp. RED65]
 gi|94427433|gb|EAT12411.1| hypothetical protein RED65_16276 [Oceanobacter sp. RED65]
          Length = 1407

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 8/190 (4%)

Query: 85   ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS----YNEKLSIVFFDIDYFK 140
            I  S +     +  RI  L+  D L+GL N +    +L         +L+++F D+D FK
Sbjct: 954  IISSDITHRKQTEARIQHLAYFDPLTGLPNRAQMHEALDRLMAKEESQLALLFIDLDRFK 1013

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILAND 198
             IND  GHP GD+V+  ++ +L    G    V R+GG+EF      L  +EQ    + + 
Sbjct: 1014 PINDTMGHPAGDQVLKEVASRLKEAVGAKNLVSRIGGDEFTVIMATLPETEQAIQTIIDV 1073

Query: 199  LRKIIEN-SQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
              +I+    Q        ++++ S GIA         + ++  AD A+Y AK  G+N   
Sbjct: 1074 SERILHQMMQPFFIEDRQLYLSASVGIALYPENALSGTDLLRNADTAMYHAKAMGKNNFQ 1133

Query: 257  CFSDIENNTC 266
             +++  N   
Sbjct: 1134 FYAEEMNEKA 1143


>gi|330969542|gb|EGH69608.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 1254

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 15/192 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + E   S +RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 803 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQAWVVLMFLDLDRFK 862

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-----L 195
            IND+ GH  GD+++  ++ +L+        V R+GG+EF         +EAA+     +
Sbjct: 863 PINDSLGHAAGDRMLQEMATRLLACVSVDDTVARMGGDEFTLLLEPDESREAALNRAIHV 922

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  +   +      +  G    +T S GIA      + +S ++  AD A+Y AK+ G+N 
Sbjct: 923 AERILTSL--ITPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNN 980

Query: 255 VVCFSDIENNTC 266
              +    N T 
Sbjct: 981 FQFYQADMNATA 992


>gi|292492698|ref|YP_003528137.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291581293|gb|ADE15750.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 327

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 86/180 (47%), Gaps = 12/180 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQ 141
           +  +L  +  ++ QLS +D L+G+ N   F                 LS++  DID FK 
Sbjct: 144 LTHQLEAANEQLRQLSSLDELTGVANRRQFEMTIRQEFRRAMRNKSSLSVIMIDIDNFKA 203

Query: 142 INDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND +GH  GD  +  ++  L  V       + R GGEEF      +  + A  LA  LR
Sbjct: 204 YNDIYGHQAGDDCLRQVAKALSSVLKRPNDLLARYGGEEFVVILPETGSKGARSLAESLR 263

Query: 201 KIIENSQINI--SSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +E  +I    +S   + +TIS G++       E  + +I  ADQALY +K++GRNRV 
Sbjct: 264 RAVEILKIPHRYASQSGLQVTISLGVSTLVPQRDEDPTKLIAAADQALYQSKRAGRNRVT 323


>gi|149920296|ref|ZP_01908767.1| FHA domain/GGDEF domain protein [Plesiocystis pacifica SIR-1]
 gi|149818883|gb|EDM78323.1| FHA domain/GGDEF domain protein [Plesiocystis pacifica SIR-1]
          Length = 269

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 9/169 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           ++++  ++R D L+G+ N  AF             Y   L+++ FDID+FK+ ND +GH 
Sbjct: 99  HDQLYAMTRYDALTGVYNRRAFDEKITDEVARARRYGRPLALLLFDIDHFKRCNDTYGHR 158

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  +        FV R GGEEFAA  L   E    + A ++R ++++ +  
Sbjct: 159 AGDHVLREVAQLVQRRARKHDFVARYGGEEFAALLLEFEEPGPRLFAEEVRALVQDHEFE 218

Query: 210 ISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              G  I IT+S G+       E    +I  ADQ LY AK+ GRNRVV 
Sbjct: 219 F-EGTVIPITMSIGLVLWTPEHETAGQLIEAADQCLYRAKEGGRNRVVI 266


>gi|114776422|ref|ZP_01451467.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Mariprofundus ferrooxydans PV-1]
 gi|114553252|gb|EAU55650.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Mariprofundus ferrooxydans PV-1]
          Length = 644

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 95/223 (42%), Gaps = 12/223 (5%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112
           I +T  +   +     +S+   ++  S +   I    + +      ++  L+  D L+GL
Sbjct: 163 IVITALHRDGHEFPAEMSISPQAVGASFIFN-IFVRDISQRKADEEKLETLATRDELTGL 221

Query: 113 LNH---SAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           +N    +  +         + E L+++F D+D FK IND+ GH VGD+++   +++L   
Sbjct: 222 INRFSYNHLLKKEVALAKRHMESLAVLFLDLDGFKNINDSLGHDVGDQLLRETANRLSAC 281

Query: 166 FGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                 V R+GG+EF     G     +   L   +  +I   Q  +       +  S GI
Sbjct: 282 IRESDTVARIGGDEFLIIMPGIKDVHDPRFLCERILNMI--GQPYLIGTQECFVGASIGI 339

Query: 225 AERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           +      + + +++  AD A+Y AK SGRN    F+       
Sbjct: 340 SLYPLDGDNVESLVKNADTAMYQAKDSGRNAYKFFTPAMGEEA 382


>gi|225627531|ref|ZP_03785568.1| GGDEF domain protein [Brucella ceti str. Cudo]
 gi|225617536|gb|EEH14581.1| GGDEF domain protein [Brucella ceti str. Cudo]
          Length = 266

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 14/234 (5%)

Query: 41  TVIFIANIFLFYIG---LTPFYGLEY--ILVENLSLVIISITISLLLGYISGS--ILKE- 92
             +   ++ LF +G   +T F+  E   ++  +LSL    + I     +I      LKE 
Sbjct: 10  AALLTLSVVLFCVGATSITAFWSGETPGLMAISLSLGFPLVMIFPFSAFIFLRYDKLKEA 69

Query: 93  ---LFISYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNF 146
              L  S+  +   +RID ++GLLN  A   ++    S  E  +++  D D+FK IND+F
Sbjct: 70  YAQLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSF 129

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+
Sbjct: 130 GHGVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENT 189

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV   +
Sbjct: 190 PFHTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVVFDEE 243


>gi|24215228|ref|NP_712709.1| GGDEF domain receiver component of a two component response
           regulator [Leptospira interrogans serovar Lai str.
           56601]
 gi|45657320|ref|YP_001406.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24196312|gb|AAN49727.1| GGDEF domain receiver component of a two component response
           regulator [Leptospira interrogans serovar Lai str.
           56601]
 gi|45600558|gb|AAS70043.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 330

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 95/186 (51%), Gaps = 18/186 (9%)

Query: 91  KELFISYNRISQ-------LSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136
           KEL    +++ +       +SR D L+GL N   F   L +  ++       ++++  DI
Sbjct: 141 KELENLTDQLQEVNAYLVAISRTDSLTGLYNRRYFDEILSTEWKRCWRTEASIALIMLDI 200

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAIL 195
           D+FK  ND +GH  GD+ +  ++  +            R GGEEFA     ++E  A ++
Sbjct: 201 DHFKLYNDTYGHQGGDQCLKQVASAIRDCARRAGDVAARYGGEEFAIILPETTESNAVVV 260

Query: 196 ANDLRKIIENSQINISSGPSIHI-TISAGIA--ERCHKEPISTIIYRADQALYVAKKSGR 252
           + ++ + IEN  I  S+  +  I T+S G+A      +  I+ +I RAD+ALY+AK+ GR
Sbjct: 261 SRNILENIENLGIPHSASKTNSIVTVSIGMATLSPSPENSITELIERADKALYLAKEEGR 320

Query: 253 NRVVCF 258
           N +  +
Sbjct: 321 NCLRFY 326


>gi|322418716|ref|YP_004197939.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M18]
 gi|320125103|gb|ADW12663.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M18]
          Length = 312

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 88/177 (49%), Gaps = 10/177 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
           S+  EL  +  ++ +L+ ID L+GL N                   E LS+V  DID+FK
Sbjct: 126 SLQDELKKANEQLKRLTNIDHLTGLFNRRYLSEILEGEFFRARRNRESLSLVIIDIDFFK 185

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND++GH  GD V+A ++              R GGEEF     G+S +   + A  LR
Sbjct: 186 NVNDSYGHQNGDVVLASVAGLAQQQMRAYDSAARYGGEEFVLVFPGTSLEGGVVAAERLR 245

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255
           + + +          + +TISAG+A       + + ++  +AD+ALY AK++GRNRV
Sbjct: 246 QAVLDFSFPAPL-EDLTLTISAGVASYPSPLVDNVDSLFRQADEALYRAKQNGRNRV 301


>gi|51246803|ref|YP_066687.1| hypothetical protein DP2951 [Desulfotalea psychrophila LSv54]
 gi|50877840|emb|CAG37680.1| hypothetical protein DP2951 [Desulfotalea psychrophila LSv54]
          Length = 571

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 59/172 (34%), Positives = 86/172 (50%), Gaps = 8/172 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYN-EKLSIVFFDIDYFKQIN 143
            +   +  ++ +++  D L+ L N   F S      +L  +N + LS++  DID+FK +N
Sbjct: 397 TKRKKAEEKLVRIAATDSLTKLNNRRHFFSLGHEELALHLHNAQPLSVLMLDIDHFKNVN 456

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GDKV+   S    V   +   +GR+GGEEFA     +   +A   A  +R  I
Sbjct: 457 DTLGHQAGDKVLKIFSKICAVNLRSVDIIGRIGGEEFAVILTNTPRSQAQRTAERIRLAI 516

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           E S           IT+S GIA     E +  II RAD+ LY AK +GRNR+
Sbjct: 517 ETSPEFTKQSLP-KITVSIGIATNQPPENLDAIICRADKNLYQAKSNGRNRI 567


>gi|260566406|ref|ZP_05836876.1| diguanylate cyclase [Brucella suis bv. 4 str. 40]
 gi|261755019|ref|ZP_05998728.1| diguanylate cyclase [Brucella suis bv. 3 str. 686]
 gi|260155924|gb|EEW91004.1| diguanylate cyclase [Brucella suis bv. 4 str. 40]
 gi|261744772|gb|EEY32698.1| diguanylate cyclase [Brucella suis bv. 3 str. 686]
          Length = 255

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 119/232 (51%), Gaps = 14/232 (6%)

Query: 43  IFIANIFLFYIG---LTPFYGLEY--ILVENLSLVIISITISLLLGYISGS--ILKE--- 92
           +   ++ LF +G   +T F+  E   ++  +LSL  + + I     +I      LKE   
Sbjct: 1   MLTLSVVLFCVGATSITAFWSGETPGLMAISLSLGFLLVMIFPFSAFIFLRYDKLKEAYA 60

Query: 93  -LFISYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGH 148
            L  S+  +   +RID ++GLLN  A   ++    S  E  +++  D D+FK IND+FGH
Sbjct: 61  QLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGH 120

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+  
Sbjct: 121 GVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPF 180

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV   +
Sbjct: 181 HTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVVFDEE 232


>gi|224826492|ref|ZP_03699593.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
 gi|224601093|gb|EEG07275.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
          Length = 836

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 89/188 (47%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           S + +   +  R+  L+  D L+GL N + F+  L +       + ++++++F D+D FK
Sbjct: 390 SDITQRKQAEERLHFLANHDALTGLPNRTLFLERLEAGVEQAREFGQRMALLFIDLDRFK 449

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            +ND  GH  GD+++ ++++++  V      V RL G+EF          Q+ A  A  +
Sbjct: 450 LVNDTLGHHAGDELLVWIAEEMRKVAPPLAMVARLSGDEFTLLMPAVDSVQQVASRAQSV 509

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              I      + +G  + ++ S GI+           ++  AD A+Y AK+ G++    +
Sbjct: 510 LDAIAGE--TVVAGQEVFVSASIGISMFPEDGASADVLLVNADTAMYRAKERGKSNFQFY 567

Query: 259 SDIENNTC 266
           +   N + 
Sbjct: 568 TPDMNASA 575


>gi|213968312|ref|ZP_03396456.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
           T1]
 gi|301383444|ref|ZP_07231862.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302060299|ref|ZP_07251840.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
           K40]
 gi|302129936|ref|ZP_07255926.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213926950|gb|EEB60501.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
           T1]
          Length = 425

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 62/185 (33%), Positives = 94/185 (50%), Gaps = 12/185 (6%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIV 132
           +  Y+S    +        ++ +++  D L+GL N  A   +L           +  S +
Sbjct: 237 MTHYVSISQDVTTRLGREQKLLEIAHSDTLTGLDNRRAAEHTLERLINTARMAGKPFSFI 296

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK +ND +GHP GD V+  ++  L           R GGEEF      SS ++A
Sbjct: 297 ICDIDHFKSVNDRYGHPAGDSVLKSVAAILKHRIRAFDVAARWGGEEFLILVPDSSLKQA 356

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           A LA  +RK +E+ +I   +GP   +TIS G+AE    E  +++I RAD+ LY AK+ GR
Sbjct: 357 AELAERVRKGVESLEIP-EAGP---VTISLGVAELSPGETAASLIQRADKVLYQAKRLGR 412

Query: 253 NRVVC 257
           NRV  
Sbjct: 413 NRVEI 417


>gi|88706305|ref|ZP_01104011.1| conserved hypothetical protein, membrane [Congregibacter litoralis
           KT71]
 gi|88699456|gb|EAQ96569.1| conserved hypothetical protein, membrane [Congregibacter litoralis
           KT71]
          Length = 556

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 96/191 (50%), Gaps = 11/191 (5%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLS 130
           +S  L        +EL      +  L+ +D L+ + N  A  ++L         Y   LS
Sbjct: 357 LSRSLEAQVAERTRELKTKNAELDHLASVDKLTDIFNRRALDAALSTELARAKRYQRSLS 416

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  DID FKQ+ND++GH  GDKV+  L+ ++         +GR GGEEF      +S +
Sbjct: 417 LLLMDIDLFKQVNDHYGHLTGDKVLVTLTKEIQQKLRGSDILGRWGGEEFLIVCPETSLE 476

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +A  +A  +R  IE +    +S     ITIS GI+     +    ++ RAD+ALY+AK  
Sbjct: 477 QARNIAEKIRSSIEQTDFRPAS----KITISIGISVLGDNDTAEALVARADRALYMAKSQ 532

Query: 251 GRNRVVCFSDI 261
           GRN V  +SD+
Sbjct: 533 GRNCVRVYSDL 543


>gi|226939063|ref|YP_002794134.1| Sensory box/GGDEF family protein [Laribacter hongkongensis HLHK9]
 gi|226713987|gb|ACO73125.1| Sensory box/GGDEF family protein [Laribacter hongkongensis HLHK9]
          Length = 1041

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 10/186 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
            + +   +  +I + +  D L+GL N  A    LG        +   L+++F D+D FK 
Sbjct: 578 DVTDQKENEEQIERYAHFDALTGLANRHALYRRLGQAITSVHQHQHPLAVLFVDLDKFKT 637

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH VGD V+  ++ +L    G    + RLGG+EF     G+ E+ A+ +A  +  
Sbjct: 638 INDTLGHAVGDVVLREVAGRLSDFAGPDDILARLGGDEFLLVLPGADERAASEVAACILT 697

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +  S      G  +  T + G++      E    +I  AD A+Y AK  GRN    ++ 
Sbjct: 698 AM--SVPVRVDGRELPTTPTIGVSLYPRDGEEADDLIRNADIAMYQAKARGRNTFQLYTP 755

Query: 261 IENNTC 266
             N   
Sbjct: 756 DMNAAA 761


>gi|117621244|ref|YP_855275.1| GGDEF/response regulator receiver domain-containing protein
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117562651|gb|ABK39599.1| GGDEF/response regulator receiver domain protein [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 269

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 11/189 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKL 129
            + +LL  + G +    F    ++ +L+  D L+GL N         A+      +   L
Sbjct: 80  AVVILLLLVMGMLALHQFNRSRKMRRLAMTDDLTGLHNRRQIQAKGQAWFKQAREHGRTL 139

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  DID+FKQ+ND  GH +GDKV+A ++  +     +   VGR GGEEF      +S 
Sbjct: 140 SVLQLDIDHFKQVNDTLGHHMGDKVLAEVASCVAAQLRSLDRVGRNGGEEFLVLLPDTSL 199

Query: 190 QEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVA 247
            EA  +A  +R  +   +I+ +  G  +H+  S G A+     E    ++ RAD+A+Y A
Sbjct: 200 DEAVEVAERIRHRVAQLRIDGMPEGQPVHV--SIGCAQYSPLDESFGDLVQRADEAMYRA 257

Query: 248 KKSGRNRVV 256
           K++GRN+V+
Sbjct: 258 KQAGRNQVM 266


>gi|28868554|ref|NP_791173.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28851792|gb|AAO54868.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 425

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 62/185 (33%), Positives = 94/185 (50%), Gaps = 12/185 (6%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIV 132
           +  Y+S    +        ++ +++  D L+GL N  A   +L           +  S +
Sbjct: 237 MTHYVSISQDVTTRLGREQKLLEIAHSDTLTGLDNRRAAEHTLERLINTARMAGKPFSFI 296

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK +ND +GHP GD V+  ++  L           R GGEEF      SS ++A
Sbjct: 297 ICDIDHFKSVNDRYGHPAGDSVLKSVAAILKHRIRAFDVAARWGGEEFLILVPDSSLKQA 356

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           A LA  +RK +E+ +I   +GP   +TIS G+AE    E  +++I RAD+ LY AK+ GR
Sbjct: 357 AELAERVRKGVESLEIP-EAGP---VTISLGVAELSPGETAASLIQRADKVLYQAKRLGR 412

Query: 253 NRVVC 257
           NRV  
Sbjct: 413 NRVEI 417


>gi|74318041|ref|YP_315781.1| response regulator receiver modulated diguanylate cyclase
           [Thiobacillus denitrificans ATCC 25259]
 gi|74057536|gb|AAZ97976.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 632

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 9/177 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            I  EL ++  R++  +  D L+GL N  + +  L          +  L+++  DID+FK
Sbjct: 445 QIAAELAVANRRLANAALTDALTGLPNRRSAMDQLEQAWSAAARADTPLAVMVVDIDHFK 504

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH +GDKV+   ++ L         V R+GGEEF      +    A   A  LR
Sbjct: 505 HINDTHGHALGDKVLREAANALRASSRREDSVCRIGGEEFLVICPNTDLAAAMQSAERLR 564

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
             +   +I +       IT S G+A R +    I  ++  ADQALY AK++GRN+V 
Sbjct: 565 ATLSARRIAVGE-AECTITASIGVAVREYDTADIDGLVSAADQALYAAKEAGRNQVC 620


>gi|82701959|ref|YP_411525.1| diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis
           ATCC 25196]
 gi|82410024|gb|ABB74133.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosospira multiformis ATCC 25196]
          Length = 705

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 86/182 (47%), Gaps = 11/182 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             + +   S  RI  L+  D L+GL N +     L         Y+ +L+++F DID FK
Sbjct: 263 RDITQRKESQERIEYLAHYDSLTGLPNRTLLSDRLRIAIENARRYSIRLALLFVDIDRFK 322

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
            +ND+ GH +GDK++  ++ ++         V R+GG+EF        +  +AA  A  L
Sbjct: 323 LVNDSLGHEIGDKLLKAVAQRMQSTVRQADTVSRVGGDEFVVLLSRIETATDAARSAEKL 382

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCF 258
              I  SQ        + +T S GI+      +  S++   AD A+Y AK  GRNR   +
Sbjct: 383 ITSI--SQPYQIEEHELLLTASIGISIYPDNGKDASSLTRNADAAMYSAKGQGRNRYQFY 440

Query: 259 SD 260
           S+
Sbjct: 441 SE 442


>gi|225852560|ref|YP_002732793.1| GGDEF domain-containing protein [Brucella melitensis ATCC 23457]
 gi|254689285|ref|ZP_05152539.1| GGDEF domain protein [Brucella abortus bv. 6 str. 870]
 gi|254693769|ref|ZP_05155597.1| GGDEF domain protein [Brucella abortus bv. 3 str. Tulya]
 gi|256044716|ref|ZP_05447620.1| GGDEF domain protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113608|ref|ZP_05454428.1| GGDEF domain protein [Brucella melitensis bv. 3 str. Ether]
 gi|256257535|ref|ZP_05463071.1| GGDEF domain protein [Brucella abortus bv. 9 str. C68]
 gi|297248377|ref|ZP_06932095.1| GGDEF domain-containing protein [Brucella abortus bv. 5 str. B3196]
 gi|225640925|gb|ACO00839.1| GGDEF domain protein [Brucella melitensis ATCC 23457]
 gi|297175546|gb|EFH34893.1| GGDEF domain-containing protein [Brucella abortus bv. 5 str. B3196]
 gi|326409078|gb|ADZ66143.1| GGDEF domain-containing protein [Brucella melitensis M28]
 gi|326538784|gb|ADZ86999.1| GGDEF domain protein [Brucella melitensis M5-90]
          Length = 264

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 14/234 (5%)

Query: 41  TVIFIANIFLFYIG---LTPFYGLEY--ILVENLSLVIISITISLLLGYISGS--ILKE- 92
             +   ++ LF +G   +T F+  E   ++  +LSL    + I     +I      LKE 
Sbjct: 8   AALLTLSVVLFCVGATSITAFWSGETPGLMAISLSLGFPLVMIFPFSAFIFLRYDKLKEA 67

Query: 93  ---LFISYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNF 146
              L  S+  +   +RID ++GLLN  A   ++    S  E  +++  D D+FK IND+F
Sbjct: 68  YAQLEKSHVELQARARIDHMTGLLNREALFETMKISRSRIETGTLLVIDADHFKAINDSF 127

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+
Sbjct: 128 GHGVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENT 187

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV   +
Sbjct: 188 PFHTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVVFDEE 241


>gi|167836162|ref|ZP_02463045.1| GGDEF domain protein [Burkholderia thailandensis MSMB43]
          Length = 466

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 101/227 (44%), Gaps = 10/227 (4%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           ++A  IF    F+   G+              S   +   ++  +    G+ L+EL  + 
Sbjct: 240 WLAHAIFAGGFFMLSFGVVQALMTTRSFATVYSQQDLMARLAESMARTEGA-LQELKRTN 298

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
            ++  L+  D L+G  N   FI  + +   +        S++  D+D FK INDN+GH V
Sbjct: 299 QKLEHLATTDPLTGASNRRKFIEQMQAEIARAKRDGTAFSLLALDLDNFKTINDNYGHQV 358

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+     Q +        + R+GGEEF           A+ +A  +R  I N+   I
Sbjct: 359 GDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRTTIANAPFGI 418

Query: 211 SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
             G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV
Sbjct: 419 -DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVV 464


>gi|167630247|ref|YP_001680746.1| ggdef domain protein, putative [Heliobacterium modesticaldum Ice1]
 gi|167592987|gb|ABZ84735.1| ggdef domain protein, putative [Heliobacterium modesticaldum Ice1]
          Length = 414

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 99/208 (47%), Gaps = 3/208 (1%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G  Y+L  + + ++  +     L   + S+  +L       ++ +  D L+GL NH  F 
Sbjct: 203 GPRYLLTPSKAEILQILAGQAALALKNASMYHQLKQQNEYFARQAVTDGLTGLYNHRYFQ 262

Query: 120 SSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
             L        ++++ FDID+FK  ND +GHP GD+++  ++  L    G      R GG
Sbjct: 263 QCLQELMKERPVTLLLFDIDHFKGFNDTYGHPCGDEILRQIAHILRSQLGPQEVAARYGG 322

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTI 236
           EEFA     +  +     A  +R+ + N           ++IT+S G++E+      S +
Sbjct: 323 EEFAVILPDADLRRGIERAEQIRQAVANFCFRNPDRTLCLNITVSIGVSEKLAGWDKSRL 382

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENN 264
           I  AD+ALY AK+ GRNRV    D E +
Sbjct: 383 IEAADRALYRAKEQGRNRVCADLDREMS 410


>gi|222054280|ref|YP_002536642.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. FRC-32]
 gi|221563569|gb|ACM19541.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. FRC-32]
          Length = 934

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 104/223 (46%), Gaps = 20/223 (8%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGY---ISGSI-----LKELFISYNRISQLSRIDCL 109
            +  E ++  +   + + IT S L  Y   I+  I     +       + I Q++  D L
Sbjct: 441 VHTAERVVERDGEKLYLEITASPLFDYDGRINAGIEVVRNISRRKQMESAIEQMAFHDAL 500

Query: 110 SGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GL N   F   L          ++ L+++F D+D+FK IND+ GH +GD+++  ++ +L
Sbjct: 501 TGLPNRRLFNERLAQAIAYAQRNDQFLAVMFLDLDHFKDINDSLGHTIGDELLKEVATRL 560

Query: 163 VVVFGT-PMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITI 220
                     + R GG+EF         +++A  LA  L +  E +   I SG  + +++
Sbjct: 561 KRCGRRAEDTIARQGGDEFLLFLSEIKDKEDAVHLAALLLQ--EMTAPFILSGYELFVSV 618

Query: 221 SAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           S GI+   H    + T+   AD A+Y AK+ GRN V  ++   
Sbjct: 619 SIGISIYPHDGRDVETLASNADIAMYRAKQQGRNSVNLYNHSM 661


>gi|119775582|ref|YP_928322.1| sensory box protein [Shewanella amazonensis SB2B]
 gi|119768082|gb|ABM00653.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella amazonensis SB2B]
          Length = 1036

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 13/189 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S + E       I Q +  D L+ L N    +  L          N + +++F D+D+FK
Sbjct: 565 SDITEKKAQEQLIWQQANYDPLTKLPNRRMLLDYLDREISLASRQNVRFALLFLDLDFFK 624

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
           ++ND  GH +GDK++   +D++         V RLGG+EF                A+++
Sbjct: 625 EVNDTLGHDMGDKLLIECADRIKACIRDSDVVARLGGDEFTVLIRDIHDVGGVERAASNI 684

Query: 200 RKIIENSQINISSGP-SIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVC 257
            K I         GP S +I++S GI            ++  ADQA+Y AK+ GRNR   
Sbjct: 685 LKAIAE---PFQLGPDSAYISVSIGITLFPEDASTREALLKNADQAMYAAKEQGRNRFNY 741

Query: 258 FSDIENNTC 266
           F+       
Sbjct: 742 FTPSMQEQA 750


>gi|241662113|ref|YP_002980473.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Ralstonia pickettii 12D]
 gi|240864140|gb|ACS61801.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Ralstonia pickettii 12D]
          Length = 907

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 14/178 (7%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGS----------YNEKLSIVFFDIDYFKQIN 143
             +  +++ L++ D L+GL N + F   + +             +++++F D+D FK++N
Sbjct: 465 RAAQQQLTFLAQRDALTGLYNRAYFSQRMQAVMEQAASQANEARQVAVLFLDLDGFKKVN 524

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKI 202
           D  GH  GD ++  ++ +L         + RLGG+EF        S  EA  LA  +   
Sbjct: 525 DTAGHEAGDHLLRIVAQRLSACVRQSDTLARLGGDEFVVLLDNVRSLGEAERLAKRIVHS 584

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I   Q   +SG   ++  S GIA    H    +T++  AD A+Y AK++GRN+   ++
Sbjct: 585 IA--QPFSTSGTEYYLGASIGIALYPEHGNDAATLLRCADAAMYNAKQNGRNQHRVYT 640


>gi|46199580|ref|YP_005247.1| diguanylate cyclase/phosphodiesterase [Thermus thermophilus HB27]
 gi|46197206|gb|AAS81620.1| diguanylate cyclase/phosphodiesterase domain 1 (GGDEF) [Thermus
           thermophilus HB27]
          Length = 360

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 83/174 (47%), Gaps = 11/174 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
           +L  L   Y      +  D L+GL N              L  Y   LS+V  D+D FK 
Sbjct: 186 LLVRLKEGYMEAQLDAYTDFLTGLRNRRYLELILERELFRLQRYGRPLSLVLLDLDGFKA 245

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH VGD+V+  L+ +L           RLGGEEFA     +   +A  LA  LR+
Sbjct: 246 VNDLHGHEVGDRVLQALAQRLEAHLRRSDRAVRLGGEEFALLLPETPLPQALRLAERLRR 305

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +E   +     P   IT S G+AE    +   T++ RAD+A+Y AK+ G+NRV
Sbjct: 306 AVEAMAVP----PVARITASFGVAEARPTDTPLTLLRRADEAMYRAKRKGKNRV 355


>gi|115351075|ref|YP_772914.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
 gi|115281063|gb|ABI86580.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
          Length = 492

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 10/215 (4%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           +    +  V   +LV       + L ++    L+    + + +  L+R D L+GL N  +
Sbjct: 278 YAAWRHRAVTIGALVATFGVAFIALSFLLSGQLRRRMRAESELVLLARTDGLTGLNNRRS 337

Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
           F   L     +        S++F D+D FK  ND +GH  GD  +A ++  +      P 
Sbjct: 338 FGEVLDREWRRARRTHSVFSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPV 397

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               R GGEEF      +    AA +A  +R  I+   +  +      +T S G+A    
Sbjct: 398 DTAARYGGEEFVVLLPDTPPAGAAQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTP 457

Query: 230 KEP--ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           ++      +I  AD+ALY AK  GRNRV     ++
Sbjct: 458 EQDNEPDAVIKAADEALYYAKTIGRNRVAALQPLD 492


>gi|332994512|gb|AEF04567.1| hypothetical protein ambt_15285 [Alteromonas sp. SN2]
          Length = 1500

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 94/195 (48%), Gaps = 11/195 (5%)

Query: 81   LLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132
            ++ Y++  S + E+     RI  L+  D L+GL N +  +  L           +   ++
Sbjct: 1054 IVNYVAAYSNIDEIKNMQRRIEYLATHDELTGLPNRTVLLERLELMISGAKRSKQLCGVL 1113

Query: 133  FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            F D+D FK +NDN GH VGD ++  ++ +L         + R+GG+EF A    S   E 
Sbjct: 1114 FVDLDNFKPVNDNLGHKVGDLLLKQVTKRLQQCIRDTDMLARIGGDEFVALISASHIDEI 1173

Query: 193  AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSG 251
              +A  +   ++N + ++S+  SI ++ S GIA           ++  AD+A+Y+AK SG
Sbjct: 1174 DDIAKRIISQVQN-EFDVST-HSISVSASIGIAVYPADGISSEILLQHADEAMYLAKSSG 1231

Query: 252  RNRVVCFSDIENNTC 266
            RN+   F+       
Sbjct: 1232 RNQYQYFTAKMKEQA 1246


>gi|262043458|ref|ZP_06016581.1| cellulose synthesis regulatory protein [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259039200|gb|EEW40348.1| cellulose synthesis regulatory protein [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 438

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 53/199 (26%), Positives = 101/199 (50%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+ +  T+ LLL + +   +++ + +    +   +  D L+ LLN  A          
Sbjct: 236 LTLMWVLFTLMLLLSWLVIRRMVRNMSVLQTSLEWQAWHDALTRLLNRGALFEQAMAVAS 295

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   L+++  D+D+FK IND +GH  GD+V++ ++  L         +GR+GGEEF
Sbjct: 296 DCQRSGRPLAVIQLDLDHFKHINDRYGHQAGDRVLSMVASTLSSAVRQGDLLGRVGGEEF 355

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIY 238
                 ++ QEAA +A  LR+ I+  ++ + +  ++ ++ S G++    +       +  
Sbjct: 356 CIVMPNTTLQEAAAVAERLRQRIQGREVFLHNNVTLRVSASLGVSASEERGEYQFEALQS 415

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD  LY+AK++GRN+V  
Sbjct: 416 VADGRLYLAKQNGRNQVCF 434


>gi|134292528|ref|YP_001116264.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
 gi|134135685|gb|ABO56799.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
          Length = 520

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 15/219 (6%)

Query: 63  YILVENLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSA 117
           Y    + ++ I S  ++L +G+I  S+L     ++   +   +  L+R D L+GL N   
Sbjct: 298 YAAWYDRAIPIGSAMVALAIGFIGLSLLLDVQLRKRQRAETELQALARTDGLTGLDNRRM 357

Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
              +L     +       LS++F D+D+FK+ ND  GH  GD  +A +   +      P 
Sbjct: 358 LDVTLAREWRRAARSQHALSLLFVDVDHFKRYNDTQGHQAGDDALAAVGRCIAGCLRRPA 417

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--R 227
            +  R GGEEF           A  +A  +R  I +  I   +G    +T S G+     
Sbjct: 418 DYAARYGGEEFVVVLPDVDTDGAVAIAETIRTGILDLGIRHDAGMCGRVTASIGVTTCYP 477

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              + I   +  AD ALY AK SGRN+VV  +  +    
Sbjct: 478 ERGDTIQAALKLADDALYRAKASGRNQVVVHTAADGERA 516


>gi|78223628|ref|YP_385375.1| diguanylate cyclase [Geobacter metallireducens GS-15]
 gi|78194883|gb|ABB32650.1| diguanylate cyclase (GGDEF domain) [Geobacter metallireducens
           GS-15]
          Length = 353

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 91/185 (49%), Gaps = 10/185 (5%)

Query: 81  LLGYISGSILKELFISYN--RISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVF 133
             G +  ++ + L  +    R+  LS  D L+GL N   F + L         +  S++ 
Sbjct: 162 FFGGVVENLARSLAAARECDRLKNLSMRDHLTGLYNRRVFEAMLEVEARKRTTKPFSLLL 221

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK++ND +GH  GD+V+  ++  L + F     V R GGEEF      +S+  A 
Sbjct: 222 IDLDDFKRVNDTYGHGAGDQVLVAVAKMLRLSFRKSDVVSRYGGEEFGVLLPDTSQDSAR 281

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSG 251
           ++A   R+ +    + + +   I  T+S GIA    +  I    +I  AD+ALY AK +G
Sbjct: 282 VVAERFRQNVATLSLPV-NKEKIMPTVSVGIASVTLRLGIEVADVIEEADRALYQAKVTG 340

Query: 252 RNRVV 256
           +NRV 
Sbjct: 341 KNRVC 345


>gi|302187996|ref|ZP_07264669.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 1251

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 15/192 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + E   S +RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 800 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQAWVVLMFLDLDRFK 859

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-----L 195
            IND+ GH  GD+++  ++ +L+        V R+GG+EF         +EAA+     +
Sbjct: 860 PINDSLGHAAGDRMLQEMATRLLACVSVDDTVARMGGDEFTLLLEPDETREAALNRAIHV 919

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  +   +      +  G    +T S GIA      + +S ++  AD A+Y AK+ G+N 
Sbjct: 920 AERILTSL--ITPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNN 977

Query: 255 VVCFSDIENNTC 266
              +    N T 
Sbjct: 978 FQFYQADMNATA 989


>gi|78358088|ref|YP_389537.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78220493|gb|ABB39842.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 398

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 83/198 (41%), Gaps = 31/198 (15%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
            +         +S ++R D L+GL N   F+         + S    LS++  DID+FK+
Sbjct: 190 DVTAHRRMLEELSHMARTDPLTGLNNRRFFMEAARAEVERMQSSGRPLSLLMLDIDHFKR 249

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH  GD V+  LS  L           RLGGEEFA     +   EA   A  LR+
Sbjct: 250 VNDTWGHDAGDMVLKQLSCCLAETMRGQDVCARLGGEEFAVLLPETGHAEACRAAETLRQ 309

Query: 202 IIENSQINISSGPSIHITISAGIA---------------------ERCHKEPISTIIYRA 240
            +        +G    +T S G+                        C  + +  ++ RA
Sbjct: 310 AVAGMAF---AGHGFSVTSSLGLTTLDSAGHAVSGQRPVPGGVAVSACCGQVVEILLKRA 366

Query: 241 DQALYVAKKSGRNRVVCF 258
           D ALY AKK+GRNR   +
Sbjct: 367 DIALYAAKKNGRNRTEVY 384


>gi|326201287|ref|ZP_08191159.1| diguanylate cyclase [Clostridium papyrosolvens DSM 2782]
 gi|325988855|gb|EGD49679.1| diguanylate cyclase [Clostridium papyrosolvens DSM 2782]
          Length = 362

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 77/240 (32%), Positives = 120/240 (50%), Gaps = 28/240 (11%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           +  ++    +F IF   +  +  +F ++I               L  VI+S T+   + Y
Sbjct: 138 YMTIVSCGAYFYIFQKDISILLIVFPYFI---------------LGTVIVSYTVYKYMIY 182

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           ++      + + + ++ + S  D L+GL N   F       I    S N+K S++  DID
Sbjct: 183 LNN-----MSLLFRKLKEESTKDYLTGLNNVREFNKLFRLVIEKAVSNNQKFSLLLIDID 237

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK IND  GH  GDKV+  +   L     T   + R GGEEF+     +S   A  +A 
Sbjct: 238 FFKNINDTHGHQSGDKVLKEIGKILKQNCRTDDNISRNGGEEFSILLENASNSMAIEIAE 297

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            +RKII +++  +SSG  I++TIS GI+        I+ II RAD+ALY AK++GRN VV
Sbjct: 298 RIRKIIADNEFEVSSGRKINVTISIGISSYPETVTDITQIIERADEALYKAKRNGRNLVV 357


>gi|152981463|ref|YP_001352343.1| signal transduction protein [Janthinobacterium sp. Marseille]
 gi|151281540|gb|ABR89950.1| signal transduction protein [Janthinobacterium sp. Marseille]
          Length = 457

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 89/197 (45%), Gaps = 14/197 (7%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------ 124
           + I+       L Y+ G +++    S   + +L++ D L+GL N     S L        
Sbjct: 267 VTILGSLFVAWLAYLLGGVIR----SRKELQRLAQYDVLTGLPNRRLLDSRLKKAIAGAN 322

Query: 125 -YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            ++  +++ F D+D FK++ND+ GH  GD+++  ++ +L         + R GG+EF   
Sbjct: 323 GHHHLVAVCFLDLDGFKEVNDSLGHAAGDRLLQQMAQRLQHCMRATDTLARFGGDEFVVI 382

Query: 184 ALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
               +S  E   +   +    +  +     G  + ++ S G+A          ++ RAD 
Sbjct: 383 LDRLNSIDECEKILERMIHTAQ--EPVHMDGNEVIVSASIGVAMFQPGVEREQLLKRADT 440

Query: 243 ALYVAKKSGRNRVVCFS 259
           A+Y AK+ G+N+ V   
Sbjct: 441 AMYQAKQLGKNKYVFAD 457


>gi|154253256|ref|YP_001414080.1| response regulator receiver modulated diguanylate cyclase
           [Parvibaculum lavamentivorans DS-1]
 gi|154157206|gb|ABS64423.1| response regulator receiver modulated diguanylate cyclase
           [Parvibaculum lavamentivorans DS-1]
          Length = 457

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 56/191 (29%), Positives = 91/191 (47%), Gaps = 14/191 (7%)

Query: 81  LLGYISGSILKELFISY--NRISQ---LSRIDCLSGLLNHSAFISSLGSY-------NEK 128
           L+      + ++ +  Y  ++  Q   L+  D L+GL N       L +         + 
Sbjct: 264 LVARARSQLRRKRYQDYLRDKFQQGLELAITDGLTGLYNRRYMEGHLATLVDDAANTGKP 323

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           ++++ FDIDYFK +ND  GH  GD+V+   +D++           RLGGEEF      + 
Sbjct: 324 VALLIFDIDYFKAVNDTHGHQAGDEVLKEFADRISANVRGIDLACRLGGEEFVVVMPDTD 383

Query: 189 EQEAAILANDLRKIIENSQINISS-GPSIHITISAGIA-ERCHKEPISTIIYRADQALYV 246
              A  +A  LR+ +      +   G ++ +T+S GIA      +  + ++ RADQ LY 
Sbjct: 384 LTYAMTVAERLRQGVALRPFKLDETGRTLDVTVSIGIAVTEGPNDTAAKLLGRADQGLYR 443

Query: 247 AKKSGRNRVVC 257
           AK+ GRNRVV 
Sbjct: 444 AKRDGRNRVVA 454


>gi|67923273|ref|ZP_00516758.1| GGDEF [Crocosphaera watsonii WH 8501]
 gi|67854899|gb|EAM50173.1| GGDEF [Crocosphaera watsonii WH 8501]
          Length = 707

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 13/192 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           L+  YI    + +   + N +   +  D L GL N + F   +         YN+  +I+
Sbjct: 247 LIRSYIFN--ITQRKQAENELKHHAFHDGLIGLPNRNFFDQHISLISKNSQRYNKLFAIL 304

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQE 191
           F DID FK IND  GH +GD+++ + + +L        FV R GG+EF        +  +
Sbjct: 305 FIDIDNFKNINDTLGHNIGDQILQYFAKRLNSHIRKSDFVCRWGGDEFVVLLGEIQNPDQ 364

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
           AA  +  L +  E   + I  G  I++  S GIA      +    ++  AD ALY  K+S
Sbjct: 365 AAKFSQRLLQTFE-HPLQI-EGHEIYLKCSVGIAIYPEDGQETEILLKNADAALYRTKES 422

Query: 251 GRNRVVCFSDIE 262
           GRN    ++   
Sbjct: 423 GRNHYQFYNPQM 434


>gi|300864400|ref|ZP_07109272.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
 gi|300337626|emb|CBN54420.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
          Length = 666

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 14/196 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------ 129
           +   + +      + ++L  +   +  L+ +D L+ + N   F   L    ++L      
Sbjct: 469 LATQIAIAIEQSQLYQQLEAANQELQNLASLDGLTKIANRRRFDEVLTQEWQRLIVEPIR 528

Query: 130 -SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-----MFVGRLGGEEFAAA 183
            S++  DID FK  ND +GH  GD  +  ++  +              V R GGEEFA  
Sbjct: 529 LSLILCDIDCFKAYNDTYGHQAGDSCLQQVATAIRDACREIPPERLYLVARYGGEEFAVI 588

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAERCHKEPI-STIIYRAD 241
              +   +A  +A ++R+ I+   I       S +IT+S G+A     E +  T+I  AD
Sbjct: 589 LPNTGITDAIAVAEEIRRRIQTLAIPHQQSFVSEYITLSLGVASADAAEALPETLIAAAD 648

Query: 242 QALYVAKKSGRNRVVC 257
           +ALY AK  GR+RVV 
Sbjct: 649 KALYEAKSLGRDRVVA 664


>gi|239906697|ref|YP_002953438.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239796563|dbj|BAH75552.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 498

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 10/169 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +N++   +  D L+ + N  AF   L         Y   +S++  DID+FK IND +GH 
Sbjct: 312 FNQVKIRADHDGLTRIHNRRAFDERLIDELRRHQRYRHAMSLLMVDIDHFKGINDRYGHL 371

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD V+  +   L     +  F  R GGEEF      ++E++A ILA  LR  I  ++  
Sbjct: 372 VGDHVLREVGSILSETLRSTDFTARYGGEEFVVILPQTAEEQARILAERLRGAIAEARF- 430

Query: 210 ISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVV 256
           +  G    IT+S G++            ++ +AD+ALY AK  GRN+V 
Sbjct: 431 VHDGEDFSITVSIGVSALQPGALTRRKDLLEKADKALYQAKHLGRNQVC 479


>gi|311697298|gb|ADQ00170.1| protein containing diguanylate cyclase, predicted domains [marine
           bacterium HP15]
          Length = 690

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 12/186 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136
            +S S +   +     ++Q +  D L+GL+N           I     Y   ++++  DI
Sbjct: 510 LVSLSGVAARYRLVAELTQKAHFDQLTGLVNRRFMDELLFNEIERCRRYRNPMTVLLLDI 569

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK IND FGH VGD+V+  ++ +L     +   V R GGEEF      ++   A ++ 
Sbjct: 570 DHFKSINDTFGHDVGDRVLEAVASRLKGAVRSVDSVARWGGEEFIVMLAETNLSSALVVG 629

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            ++RK +E  +  ++      +T+S G+++    + + +++ RAD ALY AK+ GRN+VV
Sbjct: 630 ENIRKTVERGEYALNR----PVTVSIGVSQFKKDDTVDSLLKRADIALYDAKERGRNQVV 685

Query: 257 CFSDIE 262
             SD E
Sbjct: 686 A-SDPE 690


>gi|126443111|ref|YP_001063817.1| GGDEF domain-containing protein [Burkholderia pseudomallei 668]
 gi|126222602|gb|ABN86107.1| diguanylate cyclase (GGDEF) domain protein [Burkholderia
           pseudomallei 668]
          Length = 487

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 11/204 (5%)

Query: 64  ILVENLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  + L ++++   I+++ G  +    L+    +  R+ +L+R D L+GL N  AF  +L
Sbjct: 279 IRAQRLGVLMLVFGIAIVGGTALLARELRWRRHAEMRLQRLARTDALTGLGNRRAFDENL 338

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGR 174
                        LS++F DID FK  ND++GH  GD V+  +   L   V      V R
Sbjct: 339 RSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAGDDVLREVGGCLAVNVRRAADDVAR 398

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEP 232
            GGEEF      +  + AA +A  +R+ + +  I     P   +T+S G+          
Sbjct: 399 YGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEHVRSPYARVTVSIGLVTSHEHIAHS 458

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
            +T++  AD ALY AK +GRNRV 
Sbjct: 459 DATLVKMADAALYQAKSTGRNRVC 482


>gi|329911378|ref|ZP_08275486.1| EAL/GGDEF/PAS/PAC-domain containing protein [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327545945|gb|EGF31041.1| EAL/GGDEF/PAS/PAC-domain containing protein [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 831

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 12/206 (5%)

Query: 68  NLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
            LS+  +  +   +L YI   + + +   S  ++  L+  D L+GL N    +  L    
Sbjct: 367 WLSVTAVRDSHHAVLNYIGIVTDISDRKASEEQMRHLAEHDFLTGLPNRVLLLDRLQQAI 426

Query: 123 ---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                   +L+++F D+D FK IND+FGH VGDK++  ++++L         V RLGG+E
Sbjct: 427 AVAERSRTRLAVLFLDLDRFKNINDSFGHHVGDKLLQTVAERLKKCVRGIDTVSRLGGDE 486

Query: 180 FAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTII 237
           F    + + S +  A +A  + + I         G    +T   G++        +  +I
Sbjct: 487 FVIMLVDTGSGEPIAHVAGKILQAI--GTPYSIEGCEFSVTTCIGVSTYPADGTDMDVLI 544

Query: 238 YRADQALYVAKKSGRNRVVCFSDIEN 263
             AD A+Y AK  G NR   F++  N
Sbjct: 545 KSADTAMYHAKSKGSNRYQFFNNDMN 570


>gi|310644494|ref|YP_003949253.1| diguanylate cyclase [Paenibacillus polymyxa SC2]
 gi|309249445|gb|ADO59012.1| Diguanylate cyclase [Paenibacillus polymyxa SC2]
          Length = 363

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 69/270 (25%), Positives = 116/270 (42%), Gaps = 19/270 (7%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFI------ATVIFIANIFLFYIGLTPFYGLE 62
           L   L    N ++     FM+   +  ++           + I N+F   I   P     
Sbjct: 93  LGRLLLFGINNQAIVGAVFMLLVGLGCTVLSHLSWSRLPKLMIMNVFALGIIFCPLMINL 152

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYN---RISQLSRIDCLSGLLNHSAFI 119
             L + L +  +   IS++ G +   I + +  S     R+   S  D L+ L N     
Sbjct: 153 KNLDDVLHVYPLQFFISMVGGCLLYLIAESINTSNELLLRLEHTSYTDHLTNLSNRRQLE 212

Query: 120 SSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
            SL          +E LS++  DID+FK++ND +GH  GD V+  L   L+        V
Sbjct: 213 FSLEEQLPQARQRHEHLSVLVLDIDHFKEVNDTYGHAAGDAVLRQLGQILMEKCRANDVV 272

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC---H 229
            R GGEEF       + ++A  +AN +   +   +  ++ G  + +T+S G+        
Sbjct: 273 TRSGGEEFTVLLPNCAFRQALRIANQILSGVNQHEFILADGLVLKVTVSIGVTTFPGTGE 332

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               + ++ +AD+ALY AKK+GRNRV  + 
Sbjct: 333 DMSGAALLEQADKALYEAKKAGRNRVCSYE 362


>gi|239906295|ref|YP_002953036.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239796161|dbj|BAH75150.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 368

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 56/182 (30%), Positives = 84/182 (46%), Gaps = 10/182 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
             +         + +L+  D L+GL N   F                 LS++  DID+FK
Sbjct: 180 QDISARKALEEELLRLAASDPLTGLANRRGFFEGAARMLGMARRCGTPLSMIMLDIDHFK 239

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GH  GD V+  ++ +L          GR+GGEEFA    G+       LA  LR
Sbjct: 240 AVNDAYGHDAGDAVLRAVAGRLRESLRVSDLAGRVGGEEFAVLCPGTDLAGGVELAERLR 299

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCF 258
             +E+  +  +   ++ +T S G+A+         S  + RAD+ALY AK+ GRNRV   
Sbjct: 300 LALEDMVVT-ADCRAVKVTASFGVAQCRDDRDAAPSACLTRADRALYAAKRGGRNRVCLE 358

Query: 259 SD 260
           SD
Sbjct: 359 SD 360


>gi|238892956|ref|YP_002917690.1| putative transmembrane protein [Klebsiella pneumoniae NTUH-K2044]
 gi|238545272|dbj|BAH61623.1| putative transmembrane protein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 348

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 74/267 (27%), Positives = 121/267 (45%), Gaps = 22/267 (8%)

Query: 8   FLSIWLCH--EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYIL 65
           F  +W  H   K +    PH   +  ++   +FI T+ F  NI  F +   P +    I+
Sbjct: 78  FGMLWAWHVVTKAMLLTPPHFNYLVIALLSILFIGTIAFSNNITAFTLHSLPTFLACLIM 137

Query: 66  VEN---------LSLVIISITISLLLGYISGS----ILKELFISYNRISQLSRIDCLSGL 112
            E            L I  IT+  ++   S +    ++ +L    N ++ LS +D L+GL
Sbjct: 138 AEGEQWLRMTYCFMLPIAGITLQNIIQKRSDAFTQGLMDKLMHERNTLNDLSMLDPLTGL 197

Query: 113 LNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +      +   ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 198 YNRRGLQNRLDTLLALDGDNHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRNAVRS 257

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      SSE+ A   A  +R+ + + +I      S+  ++TIS G+  
Sbjct: 258 RDIVARFGGEEFMVLLTNSSEETAWKTAERIRQRVYDLKIPHMFNESVATNVTISIGLTP 317

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRN 253
               + I   + RAD ALY AK  GRN
Sbjct: 318 LI-NDNIEQALARADGALYEAKNKGRN 343


>gi|254701804|ref|ZP_05163632.1| GGDEF domain protein [Brucella suis bv. 5 str. 513]
 gi|254710139|ref|ZP_05171950.1| GGDEF domain protein [Brucella pinnipedialis B2/94]
 gi|254714138|ref|ZP_05175949.1| GGDEF domain protein [Brucella ceti M644/93/1]
 gi|254716804|ref|ZP_05178615.1| GGDEF domain protein [Brucella ceti M13/05/1]
 gi|256031634|ref|ZP_05445248.1| GGDEF domain protein [Brucella pinnipedialis M292/94/1]
 gi|256061148|ref|ZP_05451302.1| GGDEF domain protein [Brucella neotomae 5K33]
 gi|256159776|ref|ZP_05457519.1| GGDEF domain protein [Brucella ceti M490/95/1]
 gi|256255034|ref|ZP_05460570.1| GGDEF domain protein [Brucella ceti B1/94]
 gi|256369482|ref|YP_003106990.1| GGDEF domain protein [Brucella microti CCM 4915]
 gi|260168763|ref|ZP_05755574.1| GGDEF domain protein [Brucella sp. F5/99]
 gi|255999642|gb|ACU48041.1| GGDEF domain protein [Brucella microti CCM 4915]
          Length = 264

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 14/234 (5%)

Query: 41  TVIFIANIFLFYIG---LTPFYGLEY--ILVENLSLVIISITISLLLGYISGS--ILKE- 92
             +   ++ LF +G   +T F+  E   ++  +LSL    + I     +I      LKE 
Sbjct: 8   AALLTLSVVLFCVGATSITAFWSGETPGLMAISLSLGFPLVMIFPFSAFIFLRYDKLKEA 67

Query: 93  ---LFISYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNF 146
              L  S+  +   +RID ++GLLN  A   ++    S  E  +++  D D+FK IND+F
Sbjct: 68  YAQLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSF 127

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+
Sbjct: 128 GHGVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENT 187

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV   +
Sbjct: 188 PFHTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVVFDEE 241


>gi|172038658|ref|YP_001805159.1| putative adenylate cyclase [Cyanothece sp. ATCC 51142]
 gi|171700112|gb|ACB53093.1| putative adenylate cyclase [Cyanothece sp. ATCC 51142]
          Length = 592

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 64/264 (24%), Positives = 123/264 (46%), Gaps = 30/264 (11%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIAN-----IFLFYIGLTPFYGLEYI 64
            +W+     +     +  +   S  ++  I  ++FI N     + LF      F    ++
Sbjct: 335 WLWIFAWTTIGMLVTYVVLNKHSFQYNSVIKWILFILNDCWLGLLLFSCSYVLFLQGWWV 394

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
                 +V++  ++ +++               ++   L+  D L+ + N   F   L  
Sbjct: 395 PTITPFMVVLGASVIIMV---------------DKWKYLATFDTLTKVPNRLYFDKILEQ 439

Query: 125 YN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                    ++ S++  D+D+FKQ ND +GHP GD+ +  ++ ++        FV R GG
Sbjct: 440 TRLLHHLSRKQTSLILCDVDHFKQYNDTYGHPAGDRCLQKVAKEIRTAIRRTDFVARYGG 499

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAERCHKEPIST- 235
           EEFA     +  QEA  +A  + + + +  I+ ++   S ++TIS GI+    ++ +ST 
Sbjct: 500 EEFAIILPRTDRQEAKKIAQRILEKVISLNISHNTSLTSDYVTISCGISSLFLQDQLSTK 559

Query: 236 -IIYRADQALYVAKKSGRNRVVCF 258
            +I +AD+ALY AK+ GRNRV+ +
Sbjct: 560 RLINQADKALYQAKQEGRNRVIVY 583


>gi|224367296|ref|YP_002601459.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223690012|gb|ACN13295.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 925

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 16/199 (8%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +L  GYI    + E   S ++I +L+  D L+GL N    +  LG             ++
Sbjct: 463 TLWYGYI--WDVTERKASEDQIKKLALYDALTGLANRRLLMDRLGHAIAISRRKKNCGAV 520

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSE 189
           +  D+D FK +ND  GH VGD ++  ++ +L         V RLGG+EF      LG  E
Sbjct: 521 LMLDMDNFKSLNDTKGHNVGDALLVEVAKRLQACVRETDTVARLGGDEFVVLLEWLGQDE 580

Query: 190 ----QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQAL 244
               ++A  +A  ++ ++  + +        H + S G++     +     ++ RAD A+
Sbjct: 581 KVGHEKAMAIAEKIKGMLNQAYLLGREHHLHHSSASIGVSLFQSGDAGEGEVLKRADVAM 640

Query: 245 YVAKKSGRNRVVCFSDIEN 263
           Y AK  GRNRV  +S+   
Sbjct: 641 YEAKDRGRNRVCFYSEARQ 659


>gi|183222726|ref|YP_001840722.1| hypothetical protein LEPBI_I3382 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912758|ref|YP_001964313.1| GGDEF domain-containing protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167777434|gb|ABZ95735.1| GGDEF domain protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167781148|gb|ABZ99446.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 305

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 14/185 (7%)

Query: 88  SILKELFISYNR-------ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVF 133
             ++E      +       + +L+ +D L+ L N  +F  +L          N +  +  
Sbjct: 119 RDVRERRRLEEQKNVLINSLKRLAYMDELTMLPNRRSFADTLQKTIATVKRRNRESVLAV 178

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK IND +GH +GD V+  +++  V        VGRLGGEEF      ++ + A 
Sbjct: 179 MDIDHFKVINDTYGHDIGDLVLKKMANIFVDCLREEDTVGRLGGEEFGCILPDTTTEGAT 238

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           I+ + LR+ +E  +  I     ++IT+S G  +    +    ++  AD ALY AK  GRN
Sbjct: 239 IVLDRLRESVETHRFFIFDNYYLNITLSIGYTKVHPIQKPEEVLKFADIALYQAKNHGRN 298

Query: 254 RVVCF 258
           R+  +
Sbjct: 299 RIQVY 303


>gi|119470913|ref|ZP_01613497.1| sensory box/GGDEF/EAL domain protein [Alteromonadales bacterium
           TW-7]
 gi|119445935|gb|EAW27215.1| sensory box/GGDEF/EAL domain protein [Alteromonadales bacterium
           TW-7]
          Length = 695

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 11/189 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
            I    + E   S   I + +  D L+ L N    +  L          +EK ++ F D+
Sbjct: 246 MIIIRDITEQHQSEQLIRKQAYFDSLTQLPNRLLALDRLSQLTVEATRNDEKAAVFFLDL 305

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAIL 195
           D FK+IND+ GH  GDKV+   +++L         +GRLGG+EF   + G S Q+ A  +
Sbjct: 306 DDFKKINDSLGHEAGDKVLIETANRLQRALRKADTIGRLGGDEFIILSKGISTQQNAVGI 365

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
           A  L +     +     G  + +TIS G+A      + +S ++  AD A+Y AK  GRN 
Sbjct: 366 AEKLLQNFR--EPFTIEGRELMLTISIGVAMFPDNGKSVSDLLRNADTAMYQAKALGRNT 423

Query: 255 VVCFSDIEN 263
              F++  N
Sbjct: 424 YSFFTNQMN 432


>gi|254244857|ref|ZP_04938179.1| hypothetical protein PA2G_05730 [Pseudomonas aeruginosa 2192]
 gi|126198235|gb|EAZ62298.1| hypothetical protein PA2G_05730 [Pseudomonas aeruginosa 2192]
          Length = 487

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 65/281 (23%), Positives = 117/281 (41%), Gaps = 40/281 (14%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYF--SIFFSIF-IATVIFIANIFLFYIGLTPFYGLEYI 64
           +L+ +L H  +L      TFM+++  ++ F +F +   +F     L +I  +  Y +E +
Sbjct: 205 WLTYFLYHVDSLRG----TFMVFYVLALLFGVFQLPPRVFARCAALAFIAFSGIYLVEAL 260

Query: 65  ----------LVENLSLVIISITISLLLGYISGSILKELFISY-------------NRIS 101
                      ++ L + I+ + +SL   YI     +     Y              ++ 
Sbjct: 261 QQRLELPGRAALQVLVMFIVMVWLSLFASYIQAMRQRMRQRRYALQAHQDTLRGMMRQLE 320

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            L   D L+GL N   F+            N +  +   D+D+FK+IND  GH  GD+V+
Sbjct: 321 DLVATDELTGLFNRRHFMRMASRALEDLLPNRQHGLALIDLDHFKRINDRHGHAAGDRVL 380

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +            + R GGEEF      +  ++       LR   + ++     G +
Sbjct: 381 QTFAAVARSCLRDGDVLARYGGEEFVLLLPHADAEQLESCCERLRLAFQQAE---PVGVT 437

Query: 216 I-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  +++S G+      + +   + RADQALY AK+ GRNR 
Sbjct: 438 VDTLSLSVGMTLLYADDDLDEALQRADQALYRAKRGGRNRC 478


>gi|189424661|ref|YP_001951838.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
 gi|189420920|gb|ACD95318.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
          Length = 805

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 11/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E  ++   + +L+  D L+GL N       L          N + +++F D+D FK 
Sbjct: 350 DITERNLAQRELIKLAHHDVLTGLPNRILLHDRLQQARAFAHRMNSRFALLFLDMDRFKI 409

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           IND  GH VGD ++  ++ +L   F     V R+GG+EF    L  +   +   L + L 
Sbjct: 410 INDTLGHAVGDDLLRMIAQRLKACFRETDTVARIGGDEFVVLMLNVTDRTDICTLNDKLL 469

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  E +Q  +  G  + +T S G+      E  +  ++ +AD A+Y AK  GRN +  ++
Sbjct: 470 Q--ELAQPFMIRGHELFVTTSGGVCTYPDDEDDVEIMMQKADIAMYHAKALGRNNIQFYN 527

Query: 260 DIENN 264
           D  + 
Sbjct: 528 DGMDQ 532


>gi|262394290|ref|YP_003286144.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio sp.
           Ex25]
 gi|262337884|gb|ACY51679.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio sp.
           Ex25]
          Length = 280

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 63/180 (35%), Positives = 94/180 (52%), Gaps = 12/180 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L  +   +S++SR D L+GL N + +  SL          +   S+V FDID+FK++ND 
Sbjct: 105 LKETNQHLSEISRKDGLTGLFNRAYWEQSLKEEFAHLKVIDGPCSLVIFDIDHFKKVNDT 164

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GHP GD+VI   S  L     +    GR GGEEF      +++++A   A  LRK IE 
Sbjct: 165 YGHPTGDEVIRRTSSLLRKTARSSDVCGRFGGEEFTVLLPHTNQEQACYFAERLRKRIEQ 224

Query: 206 SQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             + +     I+ TIS G+ E   + E  +  +  AD ALY AK++GRN+       EN+
Sbjct: 225 EIVKVED-FLINYTISIGVCEYKPYFETHTQWLKSADAALYRAKENGRNQTCLH---END 280


>gi|254249563|ref|ZP_04942883.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
 gi|124876064|gb|EAY66054.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
          Length = 528

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 15/210 (7%)

Query: 63  YILVENLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSA 117
           Y    + ++ I S  + L +G++  S+L     ++   +   +  L+R D L+GL N   
Sbjct: 305 YAAWYDRAIPIGSAMVLLAIGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRM 364

Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
              +L     +       LS++F D+DYFK  ND  GH  GD  +A +   +      P 
Sbjct: 365 LDVTLAREWRRAARSQHALSLLFIDVDYFKHYNDTQGHQAGDDALAAVGHCIAGCLRRPA 424

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AER 227
            +  R GGEEF           A  +A  +R  I +  I   +G    +T+S G+  +  
Sbjct: 425 DYAARYGGEEFVVVLPDIDTDGAVTIAETIRTGILDLGIRHDAGTVGRLTVSIGVTTSYP 484

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              + I   +  AD+ALY AK+ GRNR+V 
Sbjct: 485 ERDDNIQAALKLADEALYRAKEGGRNRIVV 514


>gi|117929112|ref|YP_873663.1| diguanylate cyclase/phosphodiesterase [Acidothermus cellulolyticus
           11B]
 gi|117649575|gb|ABK53677.1| diguanylate cyclase/phosphodiesterase [Acidothermus cellulolyticus
           11B]
          Length = 884

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 95/196 (48%), Gaps = 11/196 (5%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEK 128
           ++++L  G +  S L +L     +++QL+  D L+GL N + F   L        +    
Sbjct: 413 VSVALENGRLEQS-LAQLRELEQKLTQLAFHDPLTGLANRALFSERLSQVLAKAKAEGRT 471

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS- 187
            +++F D+D FK +ND  GH  GD+++  +++++           RLGG+EFA     + 
Sbjct: 472 CAVLFIDLDDFKTVNDTLGHDAGDELLCAVAERITGCLRPSDQPARLGGDEFAVIIEDAL 531

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
           S Q A  +A  + + +  + I++  G  +HI  S GIA     +    ++  AD A+Y+A
Sbjct: 532 STQAAERIAARITEQLR-APISVH-GCELHIRASIGIATSQGVQTADELLRNADLAMYMA 589

Query: 248 KKSGRNRVVCFSDIEN 263
           K  G+ R   F     
Sbjct: 590 KADGKGRYRWFRPSMR 605


>gi|115524966|ref|YP_781877.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
 gi|115518913|gb|ABJ06897.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
          Length = 355

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 9/182 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           +  L  +   I   S  D L+GL N   F  ++           E L+++  DID+FK  
Sbjct: 164 INHLQQNLEAIRAESLTDPLTGLGNRKHFDRAVEDAVRRAYANGEPLALLMIDIDHFKIF 223

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD+V+  +   L         + R GGEEFA     ++ + A  +A ++R+ 
Sbjct: 224 NDTYGHLTGDQVLRLVGQALKQTITGQDIMARYGGEEFAVVLPNTTLRHAIGVAENIRRT 283

Query: 203 IENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +   ++   S   I   +T+S G++E    E + ++I RAD  LY AK+ GRNRVVC +D
Sbjct: 284 VTAKELKKKSTGEILGRVTVSIGVSELKLDEDMDSMIERADSCLYTAKRIGRNRVVCETD 343

Query: 261 IE 262
            E
Sbjct: 344 RE 345


>gi|303249358|ref|ZP_07335586.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
 gi|302489233|gb|EFL49195.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
          Length = 403

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 104/212 (49%), Gaps = 13/212 (6%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISG--SILKELFISYNRISQLSRIDCLSGL 112
           LT    +E      + L++ S+ + +L   +    +  + L  +   +++L+  D L+G 
Sbjct: 192 LTILRQVEAWATGGMLLLLTSVGVCILRPMVRRICADRERLQGANEALTELAVTDQLTGA 251

Query: 113 LNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N   F       +  L  Y    S++ FDID+FK +ND  GH  GD ++  LS ++ + 
Sbjct: 252 YNRLKFNQVMGHELKRLDRYGPPFSVIMFDIDHFKIVNDTHGHAAGDAMLRELSRRVSMA 311

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                ++ R GGEEF  AA  +   +A +LA  LR ++ ++         I  TIS G+A
Sbjct: 312 VRGVDWLFRYGGEEFVVAAPHTDLDQARVLAEKLRNLVADTPFP----HDIPGTISLGVA 367

Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +    +   +++ R D ALY AK +GRNRVV 
Sbjct: 368 QAHPGDTPESLMQRVDAALYEAKDTGRNRVVV 399


>gi|291613927|ref|YP_003524084.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291584039|gb|ADE11697.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 727

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 89/200 (44%), Gaps = 17/200 (8%)

Query: 81  LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132
           LL Y+   S + +   +  +I QL+  D L+ L N       L              +++
Sbjct: 273 LLYYVGIFSDVTKRKEAEAQIHQLAFYDPLTELPNRRLLNERLQQAFSVGARSGHHGAVL 332

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA------LG 186
           F D+D FK +ND  GH +GD+++  ++ +L         V RLGG+EF            
Sbjct: 333 FLDLDNFKTLNDTKGHDIGDQLLIEVAKRLNSCVRNGDTVARLGGDEFVVVLESLSSVPD 392

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALY 245
            +  +A ++A  +R  +  SQ    +      T S G+   R H++ +  ++  AD A+Y
Sbjct: 393 EAATQADLVAEKIRYAL--SQPYQLANHVHRTTPSIGVVMFRGHQQSLEEVLKFADTAMY 450

Query: 246 VAKKSGRNRVVCFSDIENNT 265
            AK +GRN +  +  +   +
Sbjct: 451 QAKTAGRNAIRFYDPVMQAS 470


>gi|167625792|ref|YP_001676086.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167355814|gb|ABZ78427.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           halifaxensis HAW-EB4]
          Length = 623

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 60/184 (32%), Positives = 99/184 (53%), Gaps = 11/184 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL  +  ++++ +RID L+G+ N ++F   +             LSI+  DID FK I
Sbjct: 441 LRELNEANQKLTEQTRIDSLTGVKNRASFDRRILAEGRISRRQQAPLSILMLDIDRFKLI 500

Query: 143 NDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND++GH  GD+ +  ++DQL  +       V R GGEEFA     + +  A  +A  +RK
Sbjct: 501 NDSYGHLAGDQALRVIADQLKQILKRPTDLVSRFGGEEFAIILPNTDKIGAQQVAETIRK 560

Query: 202 IIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +I    I    G  I +T+S G++      +E  + ++ +AD+ALY AK  GRN+V  +S
Sbjct: 561 VISKLPI-CWGGNRIRLTVSIGVSSEIITSEEHTTLLLEQADKALYQAKNDGRNQVKLYS 619

Query: 260 DIEN 263
             ++
Sbjct: 620 PDQD 623


>gi|330815199|ref|YP_004358904.1| Diguanylate cyclase [Burkholderia gladioli BSR3]
 gi|327367592|gb|AEA58948.1| Diguanylate cyclase [Burkholderia gladioli BSR3]
          Length = 364

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 82/181 (45%), Gaps = 11/181 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL  +   + +LS+ D L+ L N     + L            +LS++  D+D FKQ ND
Sbjct: 184 ELLAANRELERLSQSDGLTALPNRRYLDAYLDGEWRKSQREQSELSMLMIDVDRFKQYND 243

Query: 145 NFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD V+  +   L            R GGEEF     G+    A ++A  +R  +
Sbjct: 244 TYGHVAGDDVLRQVGAALQRCMSRPGDLAARFGGEEFGVVLPGTPAGGARLVAEKIRLEV 303

Query: 204 ENSQINISSGPSIH-ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              Q+  + G     +T+S G A      +   +++I  AD ALY AK+ GRNR V  +D
Sbjct: 304 AALQVPHAGGIEGGVVTVSIGGACVIASPEGSTTSLIETADAALYQAKRGGRNRAVIAAD 363

Query: 261 I 261
            
Sbjct: 364 A 364


>gi|83591897|ref|YP_425649.1| diguanylate cyclase/phosphodiesterase [Rhodospirillum rubrum ATCC
           11170]
 gi|83574811|gb|ABC21362.1| diguanylate cyclase/phosphodiesterase [Rhodospirillum rubrum ATCC
           11170]
          Length = 683

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 10/172 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q    D L+GL N   F   L          N++L+++F D+D+FK +ND+ GH  GD++
Sbjct: 258 QQVNHDTLTGLPNRVLFQDRLLTALASARRRNDQLAVLFVDLDHFKTVNDSLGHSFGDQL 317

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSG 213
           +  ++ +L         + R+GG+EF  A  G   Q + A++AN + + +      +  G
Sbjct: 318 LQQVATRLSQCLRDSDTLARMGGDEFTIALTGDGHQRDYAMIANRILETLRR-PFTLEGG 376

Query: 214 PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             + I  S GI    +  E + T++  AD A+Y AK SGRN    F++  N 
Sbjct: 377 HEVLIGSSIGITLFPNDAEDVDTLLRNADTAMYRAKASGRNAFQFFTEEMNR 428


>gi|83646377|ref|YP_434812.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83634420|gb|ABC30387.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 841

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 11/186 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFK 140
             + E       I   +  D L+GL N S F+               +L+++F D+D FK
Sbjct: 262 RDITERRRQEAAIEFQATHDALTGLPNRSLFLDRVTQSINHARRNESRLALIFIDLDKFK 321

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND  GH  GD ++  +S +L         + R GG+EF        SE +   LA  L
Sbjct: 322 LINDTLGHNAGDDLLRIMSKRLQECTRNCDTLARFGGDEFVLLVDNLESEADLTHLAARL 381

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +    + +  G S  IT S GI+      + +  ++  AD A+Y AK+SGRN    F
Sbjct: 382 ISSVSAPVLLL--GQSHSITCSLGISSFPEDGDNVEVLMRHADIAMYRAKESGRNSYQFF 439

Query: 259 SDIENN 264
           +    +
Sbjct: 440 THQMQD 445


>gi|83718387|ref|YP_440550.1| GGDEF domain-containing protein [Burkholderia thailandensis E264]
 gi|167579235|ref|ZP_02372109.1| GGDEF domain protein [Burkholderia thailandensis TXDOH]
 gi|167617358|ref|ZP_02385989.1| GGDEF domain protein [Burkholderia thailandensis Bt4]
 gi|257141212|ref|ZP_05589474.1| GGDEF domain-containing protein [Burkholderia thailandensis E264]
 gi|83652212|gb|ABC36276.1| GGDEF domain protein [Burkholderia thailandensis E264]
          Length = 311

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 61/178 (34%), Positives = 91/178 (51%), Gaps = 9/178 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           + +E   +  ++ + +  D L+G+ N   F + L         Y   LS++ FD+D+FK 
Sbjct: 134 MQREREEAVAKLQEYANRDGLTGIANRRFFEARLRDEFSRWQRYGGNLSVLLFDLDHFKA 193

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH VGD V+  ++ ++  V  T    GR GGEEFA     +S  EA  +A  +R+
Sbjct: 194 INDRFGHVVGDNVLRVMAQRVADVVRTQDTFGRFGGEEFALLLPCTSLDEAMHVAEKIRQ 253

Query: 202 IIENSQINISSGPSIHITISA-GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            I N+ I  + G  + +T S  G A         T++  AD ALY AK+ GRN  V F
Sbjct: 254 TIGNTPIE-AEGVRVPVTASVGGAAAHVGALTHETLVNEADAALYRAKRQGRNCSVAF 310


>gi|192360999|ref|YP_001981756.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107]
 gi|190687164|gb|ACE84842.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107]
          Length = 772

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 54/193 (27%), Positives = 91/193 (47%), Gaps = 13/193 (6%)

Query: 85  ISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFD 135
           IS   L E  L    +R++ ++  D L+ L N S F       ++     N +++++  D
Sbjct: 307 ISERKLAENALREQQSRLNYMAFHDALTSLPNRSLFYDRIYHGLARARRSNSRVALMLLD 366

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAI 194
           ID FK +ND+ GH  GD ++  ++ +L         V RLGG+EF     G     +   
Sbjct: 367 IDRFKIVNDSLGHDAGDILLKAIAMRLTEGVRDMDTVARLGGDEFVVVLEGIHDVDDVIF 426

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           +AN L   +    ++IS G SI  T+S G++           ++  AD A+Y AK++G+N
Sbjct: 427 VANKLLATLSR-PLDIS-GHSISATVSIGVSIFPEDGADTDELLKNADIAMYKAKEAGKN 484

Query: 254 RVVCFSDIENNTC 266
               ++   N T 
Sbjct: 485 NCQFYTKGMNATA 497


>gi|332305797|ref|YP_004433648.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173126|gb|AEE22380.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 393

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 68/202 (33%), Positives = 114/202 (56%), Gaps = 9/202 (4%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-IS 120
           E    +N+   II  TI +   +I   ++ ++ +  +++ + +  D LSG+ N  AF + 
Sbjct: 189 ELRFAQNVVFWIIIFTILIEAIFIFRPMVAKVSLFASKLQREANYDALSGIFNRRAFNLQ 248

Query: 121 SLGSYN------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           S   +N      + LS++  D+D+FK +ND +GH  GD+VI  ++  ++        V R
Sbjct: 249 SAQQFNKSRENDQPLSVLMCDVDFFKNVNDTYGHSTGDEVIKMVAQVMLENTRNSDLVAR 308

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPI 233
            GGEEF A    +S+ EA+I+A  +R+ IE+ +INI     +  TIS GI++ +     I
Sbjct: 309 YGGEEFIALLPRTSKHEASIVAEKIRRSIESIEINI-DNHQLRFTISIGISDLKSADSNI 367

Query: 234 STIIYRADQALYVAKKSGRNRV 255
             +I RAD+ALY AK++GRN+V
Sbjct: 368 DNVILRADEALYNAKEAGRNQV 389


>gi|283138910|gb|ADB12513.1| putative signal transduction protein [uncultured bacterium 9F08]
          Length = 965

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 11/190 (5%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFD 135
             ++   + E       + + +  D L+GL N     + L         + + ++++F D
Sbjct: 382 AVLTFRDISERLSYEQELERRAHYDELTGLANRVLLKARLQQTTAQAHRHGKSVAVLFLD 441

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAI 194
           +D+FK +ND  GH  GD+++  ++ +L  V      V R GG+EF          ++AA 
Sbjct: 442 LDHFKIVNDGLGHDCGDRLLVAIAQRLQTVVREADTVARHGGDEFVIVLSEPDNGEDAAE 501

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           +   L + I   +        ++ T S G++        + T++  AD A+Y AK  GRN
Sbjct: 502 IGRRLLQRIA--EPVWIDEHELYTTASVGVSLFPRDGTDVDTLLRNADAAMYRAKHLGRN 559

Query: 254 RVVCFSDIEN 263
            +  +S+  N
Sbjct: 560 NLQFYSEEMN 569


>gi|289208273|ref|YP_003460339.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           K90mix]
 gi|288943904|gb|ADC71603.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           K90mix]
          Length = 424

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 11/178 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
           G  + +     + I +++  D L+G+ N  +        I     Y   LS++ FD+D+F
Sbjct: 250 GKDVTDRLRMEDEIRRVAHTDWLTGVANRLSLGNTLEAEIERSQRYGRPLSLIMFDLDHF 309

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND +GH  GD+V+  L+  +         +GR GGEEF      +    A  LA  L
Sbjct: 310 KAVNDQYGHEAGDEVLKALAQTVSAELRDADTLGRWGGEEFIIVVPETRLVGATALAEKL 369

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R+ +    +    G    +T S G+AE    +    +  RAD+A+Y AK++GR+RVV 
Sbjct: 370 RQAVSTMSVPGVPG----VTASFGVAELASGDSAKLLARRADEAMYQAKQAGRDRVVA 423


>gi|163782897|ref|ZP_02177893.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882018|gb|EDP75526.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 525

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 13/181 (7%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDI 136
            ++   + +      ++  L+  D L+G+ N  A +        S   Y    S++  D+
Sbjct: 350 LVTLIDITKEKARERKLHTLATHDQLTGVYNRRALLMFFEKYLHSARRYGIPFSVILIDL 409

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK +ND FGH  GD+V+   +  +          GR GGEEF A    + +    ++A
Sbjct: 410 DNFKYVNDQFGHQTGDRVLKTFAKLVKGSLRRTDVFGRWGGEEFLALLPFNDKP--YMVA 467

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+ +E ++ +        +T S G       + I +++ RAD+ALY AK+ G+N  V
Sbjct: 468 EKLRRKVEETEFSRVG----RVTASFGATTYREGDDIDSMMARADEALYEAKRKGKNTTV 523

Query: 257 C 257
            
Sbjct: 524 V 524


>gi|148547279|ref|YP_001267381.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida F1]
 gi|148511337|gb|ABQ78197.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida F1]
          Length = 699

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 83/185 (44%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKL-SIVFFDI 136
                   E   ++ +I  ++  D L+GL N + F   L         N KL + +  D+
Sbjct: 256 LFVAEDATEELAAHAQIHHMAHHDALTGLPNRTLFHERLRQALLRGSENAKLTAALCLDL 315

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-IL 195
           D FK IND+ GH  GDK++  L  +L         + RLGG+EFA    G   ++AA   
Sbjct: 316 DNFKNINDSLGHAFGDKLLRELGKRLRRELREHDTLARLGGDEFAVVLTGLEGRDAACNT 375

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
           A  L K I  S      G    + +S GIA           ++  AD ALY AK++GRNR
Sbjct: 376 AQRLIKAI--SPPFQIEGHQFVVGVSIGIAIAPDDNDQAEQLLGYADMALYQAKRNGRNR 433

Query: 255 VVCFS 259
             CF 
Sbjct: 434 YECFD 438


>gi|302343938|ref|YP_003808467.1| 7TM domain sensor diguanylate cyclase [Desulfarculus baarsii DSM
           2075]
 gi|301640551|gb|ADK85873.1| 7TM domain sensor diguanylate cyclase [Desulfarculus baarsii DSM
           2075]
          Length = 576

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 109/234 (46%), Gaps = 11/234 (4%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG-YISG-SILK 91
           FF  +    + +    L+ +G  P   L  +    L     S+ +SL L   I G  + +
Sbjct: 342 FFLAWTVLSLGVLAYLLYGLGYLPSSML-TVHAAGLGAAAESVLLSLALADRIRGLRVDR 400

Query: 92  ELFISYNR-ISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIN 143
           E  +   R ++  +  D L+GL N    +              + LS+  FD+D+FK+ N
Sbjct: 401 EALLERQRGLAHQAVTDELTGLYNKRYLLGDLKESVKRAAQGGQPLSVALFDVDHFKRFN 460

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+FGHP GD+V+A +   +           R GGEEF      +   +A  +A  +R  I
Sbjct: 461 DSFGHPKGDEVLAAMGHDIRGCVRDGDKGCRYGGEEFVVILPMAGLDQALAVAERVRGAI 520

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +  + +     +T+SAG+A     E  + ++ RAD+ALYVAK++GR+R V 
Sbjct: 521 ARRRFAVDADQWASVTVSAGVACLRAGENAAELLDRADKALYVAKRAGRDRTVV 574


>gi|172060080|ref|YP_001807732.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
 gi|171992597|gb|ACB63516.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
          Length = 492

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 10/215 (4%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           +    +  V   +LV       + L ++    L+    + + +  L+R D L+GL N  +
Sbjct: 278 YAAWRHRAVTIGALVATFGVAFIALSFLLSGQLRRRMRAESELVLLARTDGLTGLNNRRS 337

Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
           F   L     +        S++F D+D FK  ND +GH  GD  +A ++  +      P 
Sbjct: 338 FGEVLDREWRRARRTHSVFSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPV 397

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               R GGEEF      +    AA +A  +R  I+   +  +      +T S G+A    
Sbjct: 398 DTAARYGGEEFVVLLPDTPPAGAAQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTP 457

Query: 230 KEP--ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           ++      +I  AD+ALY AK  GRNRV     ++
Sbjct: 458 EQDNEPDAVIKAADEALYYAKTIGRNRVAALQPLD 492


>gi|222110676|ref|YP_002552940.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acidovorax ebreus TPSY]
 gi|221730120|gb|ACM32940.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax ebreus TPSY]
          Length = 740

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 10/182 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           +++      RI  ++  D L+ L N           I         L+++F D+D FK +
Sbjct: 300 IQDRQRDQERIYWMAHYDALTELPNRVLLAERGQDAIRHAQESGAPLAVMFLDLDNFKHV 359

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+ GH +GD ++  ++ +L         V RLGG+EF     G++ Q AA +A  +++ 
Sbjct: 360 NDSLGHRIGDALLVEIAQRLRTTVRQRDTVARLGGDEFVLLLPGANAQGAARVAAKMQEA 419

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
               Q        + + +S GIA    H     T+I  AD A+Y AK  GRN    F+  
Sbjct: 420 --ALQPVHIQHHELSLALSMGIALFPEHGSDFETLIQSADTAMYRAKADGRNSFRFFTPT 477

Query: 262 EN 263
             
Sbjct: 478 MQ 479


>gi|45655763|ref|YP_003572.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|45602734|gb|AAS72209.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 561

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 70/209 (33%), Positives = 109/209 (52%), Gaps = 17/209 (8%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F  + YI+   L   +++ T  ++L      +  +L  S N++S+L   D L+G+ N   
Sbjct: 356 FEYIIYIIKNLLPFWVLTFTFFIVL-----VLYVKLRSSMNQVSKLIHTDPLTGIWNRRG 410

Query: 118 FIS------SLG-SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           F+       +L   +  + +I+  DID+FKQ+ND FGH  GDK +  ++  L        
Sbjct: 411 FLKLTQRSIALENRHKNEWAILMIDIDHFKQVNDRFGHDAGDKTLIRVAQILSRSIRQTD 470

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            V R GGEEFA    G  ++ +  +A +LRK +EN QI +  G    +T+S G++    K
Sbjct: 471 VVCRWGGEEFAIFLCGVGQEISINIAEELRKEVEN-QIRLKDGN--PVTLSIGVS--GGK 525

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +      ADQALY AK SGRNRV  F+
Sbjct: 526 QNLEEAFTNADQALYQAKTSGRNRVCAFN 554


>gi|300313993|ref|YP_003778085.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           domain-containing protein [Herbaspirillum seropedicae
           SmR1]
 gi|300076778|gb|ADJ66177.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domain
           protein [Herbaspirillum seropedicae SmR1]
          Length = 573

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 55/181 (30%), Positives = 86/181 (47%), Gaps = 10/181 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           +EL  +  ++  LS  D L+G+ N   F  +L           + L+++  D+DYFK+ N
Sbjct: 389 RELERANRKLEALSATDGLTGVANRRRFDEALANEMRRAVRSGQSLALLMLDVDYFKKYN 448

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+ +  ++  L          V R GGEEF+         +A   A ++ + 
Sbjct: 449 DRYGHLAGDECLRIVARVLQKSSRRATDLVARYGGEEFSVIIAECDTTQALQQAENICQA 508

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           I   ++  +  P  +I+ S G+A     E      ++  ADQALY AK  GRNRVV  SD
Sbjct: 509 IFELKLPHADSPFGYISASIGVAVLLPDEHTAPEQMVRIADQALYHAKYQGRNRVVLGSD 568

Query: 261 I 261
            
Sbjct: 569 A 569


>gi|317050226|ref|YP_004111342.1| diguanylate cyclase [Desulfurispirillum indicum S5]
 gi|316945310|gb|ADU64786.1| diguanylate cyclase [Desulfurispirillum indicum S5]
          Length = 301

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 65/187 (34%), Positives = 97/187 (51%), Gaps = 12/187 (6%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLS 130
           I++L        L+E  I    + QLS +D L+ + N      +L         Y   LS
Sbjct: 119 IAVLKDVTGHRELEETIIKLYEVKQLSMLDPLTQVYNRYKLSETLKKETTRAQRYRSHLS 178

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
            +F D+D+FK IND  GH  GD+V+  +++ +  +       GR GGEEF      +S  
Sbjct: 179 FIFLDVDHFKAINDEHGHNRGDEVLRQIAELIKNMLRQSDTFGRWGGEEFIIVLPHASLD 238

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +A++ A  LR  +E + ++I S     IT S G+ E    EP   +I RAD+ALY+AK++
Sbjct: 239 DASMKAEQLRLAVEQAPLSIGS-----ITCSFGVTEYQLGEPHDQLIQRADRALYIAKQT 293

Query: 251 GRNRVVC 257
           GRNRVV 
Sbjct: 294 GRNRVVA 300


>gi|256830365|ref|YP_003159093.1| diguanylate cyclase with beta propeller sensor [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579541|gb|ACU90677.1| diguanylate cyclase with beta propeller sensor [Desulfomicrobium
           baculatum DSM 4028]
          Length = 977

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 96/203 (47%), Gaps = 17/203 (8%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG----- 123
           L L +  +  SLLL  +  + +++     + +  L   D L+G+ N   F   L      
Sbjct: 771 LFLALTFLISSLLLARLQTARIRK-----DMLENLVMQDPLTGVPNRRKFQEVLAAEKSR 825

Query: 124 --SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEF 180
               N ++S++  DIDYFK  ND FGH  GD  +  ++  L         FVGR GGEEF
Sbjct: 826 CKRSNHQISVLMIDIDYFKGFNDRFGHQAGDLALRSVAQTLNATLKRPEDFVGRYGGEEF 885

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEP--ISTII 237
                 ++   A  +A  +++ +  + I     P S  IT+S GI+    +    I + +
Sbjct: 886 VVVLPSTNRSGAERVAQKIQQALFLTNIPYPGSPLSDRITVSLGISTFSPQTDLHIDSGL 945

Query: 238 YRADQALYVAKKSGRNRVVCFSD 260
           + ADQALY AK++GRN    + D
Sbjct: 946 FSADQALYQAKRNGRNCF-FYKD 967


>gi|293606786|ref|ZP_06689137.1| sensory box/GGDEF domain protein [Achromobacter piechaudii ATCC
           43553]
 gi|292814790|gb|EFF73920.1| sensory box/GGDEF domain protein [Achromobacter piechaudii ATCC
           43553]
          Length = 561

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 93/177 (52%), Gaps = 10/177 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYF 139
           + + +   +   + +L+  D L+ L N   F+S + +   ++        +++  D+D+F
Sbjct: 380 TDITDRKRAELELRELAATDALTTLPNRRHFMSRIAAELARIKGQGGLGSAVLMCDLDHF 439

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND +GH +GD V+   ++ L         VGR+GGEEFA     +  + A + A ++
Sbjct: 440 KHINDTWGHAIGDGVLQHFANTLRAQLREIDLVGRIGGEEFAVVLPDTDIERAHLFARNV 499

Query: 200 RKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++ I ++  + S G  I +T+S GI A     E     + R+D+ALY AK+ GRNR+
Sbjct: 500 QRQIADAPYS-SGGRHIPLTVSIGISALHGKDEDAEIALSRSDRALYYAKRRGRNRI 555


>gi|77917713|ref|YP_355528.1| putative sensory transduction system, regulatory protein
           [Pelobacter carbinolicus DSM 2380]
 gi|77543796|gb|ABA87358.1| putative sensory transduction system, regulatory protein
           [Pelobacter carbinolicus DSM 2380]
          Length = 536

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 100/227 (44%), Gaps = 15/227 (6%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK---ELFISYNRIS 101
           + + F  Y  +TP+      L+  L + ++   +S     +   + +   EL  +  R++
Sbjct: 297 VGDYFSRYRSVTPWLLGLAGLLLTLMVPLVMWFVSRRAASVDKLVAQRTYELDEANRRLA 356

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            LS  D L+G+ N  +F   L             LS++  DID+FK  ND +GH  GD  
Sbjct: 357 SLSLTDGLTGIANRRSFDDHLAQEWKRALRDRHPLSLIMVDIDHFKAYNDYYGHLAGDDC 416

Query: 155 IAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  ++  L  V       V R GGEEFA     +    A  L    R  +   +I   + 
Sbjct: 417 LRQVARMLQSVVARPGDLVARYGGEEFALILPQTD-HGAKSLGESCRAAVAGGKIPHHAS 475

Query: 214 PSIH-ITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
           P    +T+S G+A      ++  S +I  ADQA+Y AK  GR+ VV 
Sbjct: 476 PVKPVVTVSVGVATMIPHVEDDPSQLIKAADQAMYRAKLLGRDHVVV 522


>gi|55981610|ref|YP_144907.1| GGDEF domain-containing protein [Thermus thermophilus HB8]
 gi|55773023|dbj|BAD71464.1| GGDEF domain protein [Thermus thermophilus HB8]
          Length = 360

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 83/174 (47%), Gaps = 11/174 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
           +L  L   Y      +  D L+GL N              L  Y   LS+V  D+D FK 
Sbjct: 186 LLVRLKEGYMEAQLDAYTDFLTGLRNRRYLELILERELFRLQRYGRPLSLVLLDLDGFKA 245

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH VGD+V+  L+ ++           RLGGEEFA     +   +A  LA  LR+
Sbjct: 246 VNDLHGHEVGDRVLQALAQRIEAHLRRSDRAVRLGGEEFALLLPETPLPQALRLAERLRR 305

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +E   +     P   IT S G+AE    +   T++ RAD+A+Y AK+ G+NRV
Sbjct: 306 AVEAMAVP----PVARITASFGVAEARPTDTPLTLLRRADEAMYRAKRKGKNRV 355


>gi|218893422|ref|YP_002442291.1| hypothetical protein PLES_47101 [Pseudomonas aeruginosa LESB58]
 gi|218773650|emb|CAW29464.1| hypothetical protein PLES_47101 [Pseudomonas aeruginosa LESB58]
          Length = 487

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 65/281 (23%), Positives = 117/281 (41%), Gaps = 40/281 (14%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYF--SIFFSIF-IATVIFIANIFLFYIGLTPFYGLEYI 64
           +L+ +L H  +L      TFM+++  ++ F +F +   +F     L +I  +  Y +E +
Sbjct: 205 WLTYFLYHVDSLRG----TFMVFYVLALLFGVFQLPPRVFARCAALAFIAFSGIYLVEAL 260

Query: 65  ----------LVENLSLVIISITISLLLGYISGSILKELFISY-------------NRIS 101
                      ++ L + I+ + +SL   YI     +     Y              ++ 
Sbjct: 261 QQRLELPGRAALQVLVMFIVMVWLSLFASYIQAMRQRMRQRRYALQAHQDTLRGMMRQLE 320

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            L   D L+GL N   F+            N +  +   D+D+FK+IND  GH  GD+V+
Sbjct: 321 DLVATDELTGLFNRRHFMRLASRALEDLLPNRQHGLALIDLDHFKRINDRHGHAAGDRVL 380

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +            + R GGEEF      +  ++       LR   + ++     G +
Sbjct: 381 QTFAAVARSCLRDGDVLARYGGEEFVLLLPHADAEQLESCCERLRLAFQQAE---PVGVT 437

Query: 216 I-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  +++S G+      + +   + RADQALY AK+ GRNR 
Sbjct: 438 VDTLSLSVGMTLLYADDDLDEALQRADQALYRAKRGGRNRC 478


>gi|71909346|ref|YP_286933.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71848967|gb|AAZ48463.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 582

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 11/178 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
           +R++ L+  D L+ L N  AF S L          N +L+++  D+D FK IND  GH V
Sbjct: 141 DRLAYLAYHDPLTNLPNRLAFESQLAQALRGCERDNRQLALMLIDLDNFKNINDTLGHHV 200

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQIN 209
           GD+++  ++ +L     +   V R+GG+EF        S   AA +AN +++ + +S   
Sbjct: 201 GDELLQKVALRLRESVRSSDLVARIGGDEFVIVLPEIESPLTAARVANKVQQNMADS--Y 258

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             +  +++ T S GI+         +T++  AD A+Y AK +GRN    ++   N   
Sbjct: 259 RIADHALYATPSIGISLFPIDGSDANTLLRNADTAMYHAKDAGRNNHQFYTARMNEAA 316


>gi|320332968|ref|YP_004169679.1| response regulator receiver modulated diguanylate cyclase
           [Deinococcus maricopensis DSM 21211]
 gi|319754257|gb|ADV66014.1| response regulator receiver modulated diguanylate cyclase
           [Deinococcus maricopensis DSM 21211]
          Length = 463

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 110/224 (49%), Gaps = 25/224 (11%)

Query: 55  LTPFYGLEYILVEN-LSLVIISIT------ISLLLGYISGSILKELFISYNRISQLSRID 107
           L PF  L   + E  + +V++ +T      + LL  + + + +    I   R+ +L+ ID
Sbjct: 229 LAPFTALPLRVGERMIGVVLLDLTPDPSPDLHLLEIFATQAAV---AIENVRLYELATID 285

Query: 108 CLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+GL N  ++++ L         Y    S++  DID+FK++ND +GH  GD+++  L  
Sbjct: 286 DLTGLANKRSWLTRLDDALALARRYGHPTSVLIVDIDHFKRVNDTYGHLAGDELLRALGQ 345

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
           +L         +GR GGEE  A    +    A ++A  LR  + N+ +    G +I +T 
Sbjct: 346 ELRAQARASDLIGRYGGEELVALLPHTDSAGALVMAERLRAAVHNTHLTW-QGEAIRVTA 404

Query: 221 SAGIAE-------RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S G+A          H +  S ++ RAD ALY AK+ GRNR V 
Sbjct: 405 SIGLATLIPMPGGPPHGDAASDLLGRADLALYEAKRGGRNRTVV 448


>gi|283853734|ref|ZP_06370962.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
 gi|283570884|gb|EFC18916.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
          Length = 398

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 113/236 (47%), Gaps = 19/236 (8%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLT-PFYGLEYI--LVENLSLVIISITISLLLGYIS 86
            FS FF  F+   +F     L    +  P    +++  L+  ++++     +  +L   S
Sbjct: 160 LFSGFF--FVVAALFAVRTVLSLQAVDCPTASPDHVAKLLLLVAMLCSPFFVFSILAMTS 217

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYF 139
             +  EL  + + +  L+  D L+GL N   F+     +L    E+   +S+V  D+D F
Sbjct: 218 SRVEAELGEARDELRHLAETDGLTGLPNRRHFLRLAGEALDRAREQGFGVSLVMLDLDNF 277

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND  GH  GD+V+  +   L      P  VGRLGGEEF     G S   A  +A  L
Sbjct: 278 KTVNDTHGHQTGDRVLMGVGRCLAGALPAPGRVGRLGGEEFGVLLPGVSGPAAVAMAERL 337

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           R+ +E  + +      + +T S G+AE    + +  ++  AD+ LY AK++GRNRV
Sbjct: 338 RRSLEALRPD-----GLAVTASFGVAE--GDKDVDALLALADECLYAAKRAGRNRV 386


>gi|241763941|ref|ZP_04761983.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
 gi|241366764|gb|EER61205.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
          Length = 741

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 83/184 (45%), Gaps = 10/184 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S +++      RI  L+  D L+GL N +                   L++VF D+D+FK
Sbjct: 299 SEIRDRKADQERIYWLAHYDALTGLPNRTLLGERAEHAIRLARESGTPLAVVFLDLDHFK 358

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND+ GH VGD ++  ++ +L  V      V RLGG+EF     G++   AA +A  L+
Sbjct: 359 HVNDSLGHRVGDALLVEIARRLRAVVREKDTVCRLGGDEFVLLLPGANAHGAARVAGKLQ 418

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +   + Q        + +  S GIA      E   T+   AD A+Y AK  GRN    F+
Sbjct: 419 EA--SRQYYQIDHHELTMAPSMGIALFPGDGEDFDTLTQSADVAMYQAKLDGRNTFRFFT 476

Query: 260 DIEN 263
               
Sbjct: 477 PEMQ 480


>gi|15598066|ref|NP_251560.1| hypothetical protein PA2870 [Pseudomonas aeruginosa PAO1]
 gi|116050873|ref|YP_790304.1| hypothetical protein PA14_26970 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254235857|ref|ZP_04929180.1| hypothetical protein PACG_01800 [Pseudomonas aeruginosa C3719]
 gi|9948959|gb|AAG06258.1|AE004713_7 hypothetical protein PA2870 [Pseudomonas aeruginosa PAO1]
 gi|115586094|gb|ABJ12109.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126167788|gb|EAZ53299.1| hypothetical protein PACG_01800 [Pseudomonas aeruginosa C3719]
          Length = 525

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 8/174 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            +         +  L+  D L+GL N  +F+            +      +  DID+FK 
Sbjct: 346 DISRRKAMEQELRLLASTDTLTGLHNRHSFLHQAELMLKAAERFRHPCVALMLDIDHFKN 405

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD+ +  +++ L         +GRLGGEEFAA     S  +A  +A  LR 
Sbjct: 406 INDSHGHLTGDRALQRVAETLRQGLREVDLLGRLGGEEFAALLPEVSLDQALDVAERLRA 465

Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
            +E  +++   G  + +T+S G+A R    + + +++ RAD ALY AK  GRNR
Sbjct: 466 GVEALRVSNPDGEPLRMTVSIGVALRRDAGDDLESLLVRADSALYQAKSGGRNR 519


>gi|300114166|ref|YP_003760741.1| GAF/PAS/PAC sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
 gi|299540103|gb|ADJ28420.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Nitrosococcus watsonii C-113]
          Length = 946

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 51/189 (26%), Positives = 93/189 (49%), Gaps = 14/189 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S +     +  R+  L+  D L+GL N S F+  L         ++ +L+++F D+D FK
Sbjct: 494 SDITLRKQTEQRLYHLAHHDALTGLPNRSLFLDRLEHAIHHAQRHDHRLAVLFIDLDRFK 553

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            +ND  GHP+GD ++  +++++ +       + RLGG+EF       +     +++A  +
Sbjct: 554 FVNDTLGHPIGDSLLKQVAERMRLNVRAEDTIARLGGDEFTVIIENFTDTSALSLIAQKI 613

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +  +    NI  G  + I+ S GI+         + ++  AD A+Y AKK G++    F
Sbjct: 614 IEACKE-PFNIK-GKELFISASIGISLYPEDGHEANMLLQHADAAMYRAKKRGKSCYQFF 671

Query: 259 -SDIENNTC 266
            +DI  NT 
Sbjct: 672 TTDI--NTA 678


>gi|163851915|ref|YP_001639958.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163663520|gb|ABY30887.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 474

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 12/208 (5%)

Query: 61  LEYILVENLSLVIISITI----SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           +E    E  +++ +++ +    ++LL  + G  L+        +++L++ D L+GL N  
Sbjct: 264 IEAEWRETAAVIGLAVLVLCGSTVLLSLLFGRELRRSAAMQAELARLAQTDVLTGLPNRR 323

Query: 117 AFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGT 168
            F +               L+++  D D+FK+ ND +GH VGD V+  L+D L   V   
Sbjct: 324 HFETVFAQAWGTSRRTGAPLALILIDADHFKRYNDRYGHAVGDAVLRGLADSLSASVRRP 383

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
              V R+GGEEFA    G+    A  ++  + + I    +         +T+S G+A   
Sbjct: 384 GDLVARVGGEEFAVLLPGTDHDGAMRVSETIHQAIAGFAMPSVGIGPGTVTVSLGLAVDS 443

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256
               +  +  RAD ALY AK  GRN+  
Sbjct: 444 GGGTVEDLYRRADAALYEAKAGGRNQTR 471


>gi|146281508|ref|YP_001171661.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas stutzeri A1501]
 gi|145569713|gb|ABP78819.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas stutzeri A1501]
 gi|327479685|gb|AEA82995.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas stutzeri DSM 4166]
          Length = 707

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 96/197 (48%), Gaps = 14/197 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           S+++  +  S+++ L   + ++   +  D L+GLLN   F  +L           ++++I
Sbjct: 255 SMVVIALDMSVVRNL---HTQLETQAVTDSLTGLLNRRGFHQALESSLARVDRNGKRMAI 311

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQ 190
           ++ D+D FK+IND+ GH  GD+++  ++  L         + R+GG+EF A        +
Sbjct: 312 LYIDLDGFKRINDSLGHDAGDEILCKVARLLETCMRPYDIIARMGGDEFTALLDSLDHPE 371

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           +AA +A  L ++I     +   G  + +  S GIA        +  ++  AD A+Y AK+
Sbjct: 372 DAARVAEKLIELISVR--HKIDGTEVTLGASIGIAHFPDCGVSVDQLLRSADMAMYEAKR 429

Query: 250 SGRNRVVCFSDIENNTC 266
           +GR +   FS   N   
Sbjct: 430 AGRRQYRFFSSDMNERA 446


>gi|167031433|ref|YP_001666664.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida GB-1]
 gi|166857921|gb|ABY96328.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida GB-1]
          Length = 1247

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           + +  +  +  ++   +  D L+GL N + F + L +        N + +++F D+D FK
Sbjct: 791 ADISSIKHAQAKLDYQAHHDPLTGLPNRALFENRLQAVLTCAQVSNRQGAVLFLDLDRFK 850

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            IND+ GHPVGD ++  ++ +L         V RLGG+EF     G  +  +A+ +AN L
Sbjct: 851 HINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFIILLPGLHKPSDASTIANKL 910

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                      +       + S GI+        ++T+I  AD A+Y +K  GRNRV  +
Sbjct: 911 LACFAA--PFQAGEHEFFTSASIGISLYPQDGTDVATLIRNADAAMYRSKAKGRNRVEAY 968

Query: 259 S 259
           +
Sbjct: 969 T 969


>gi|82701336|ref|YP_410902.1| diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis
           ATCC 25196]
 gi|82409401|gb|ABB73510.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Nitrosospira multiformis ATCC 25196]
          Length = 1054

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 17/195 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKL-SIVFFDI 136
           +   + + +   + N I  L+  D L+GL N    +  LG      + N+++ +++F D+
Sbjct: 599 FAINTDITQRKSAENEILHLALYDSLTGLPNRRLLLDRLGHALAVSARNQRMGALLFIDL 658

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS---SEQEAA 193
           D FK +ND  GH +GD ++  ++ +L         V RLGG+EF    +G       EA 
Sbjct: 659 DNFKLLNDTLGHDMGDLLLRQVAPRLSSCVRESDTVARLGGDEFVVILMGDFGEDHDEAL 718

Query: 194 ----ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAK 248
                +   +R      Q         HIT S GIA    + +  + ++ RAD A+Y AK
Sbjct: 719 TQISTICERIRSAF--IQPFNLDPYIHHITPSIGIALFNDQSQTTNELLKRADLAMYQAK 776

Query: 249 KSGRNRVVCFSDIEN 263
            SGRN +  F     
Sbjct: 777 ASGRNAMRFFDPDMQ 791


>gi|119776342|ref|YP_929082.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B]
 gi|119768842|gb|ABM01413.1| diguanylate cyclase [Shewanella amazonensis SB2B]
          Length = 624

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 59/183 (32%), Positives = 92/183 (50%), Gaps = 11/183 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           +L+EL     ++++ + ID L+G+ N +AF   L             ++++  DID+FK 
Sbjct: 438 VLRELNEVNQKLTEQTTIDSLTGVKNRAAFNKRLQAEGRISRRQQTPMALLMLDIDHFKN 497

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           IND +GH  GD  +  ++D L      P   V R GGEEFA     +  + A  +A  +R
Sbjct: 498 INDKYGHLAGDYTLKAIADTLSAQLRRPTDLVSRFGGEEFAIILPSTDAEGAVAVAEHIR 557

Query: 201 KIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + +E   I       I +T+S G++       E    ++ +AD+ALY AK  GRNRV  F
Sbjct: 558 EAVEELTIKWEQ-FMIPLTVSIGVSSNIIESDEHPLQLLEQADKALYQAKHDGRNRVGLF 616

Query: 259 SDI 261
            DI
Sbjct: 617 QDI 619


>gi|239617058|ref|YP_002940380.1| diguanylate cyclase with PAS/PAC sensor [Kosmotoga olearia TBF
           19.5.1]
 gi|239505889|gb|ACR79376.1| diguanylate cyclase with PAS/PAC sensor [Kosmotoga olearia TBF
           19.5.1]
          Length = 607

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 93/185 (50%), Gaps = 12/185 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------- 125
           I+S  ++++L  I   + +EL     ++  +S  D L+ L N   F      Y       
Sbjct: 406 ILSQQVAVILKRI--KLEEELRRQKKQLKFMSEHDPLTDLPNRRLFAERAKQYIALAKRR 463

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              LSI++ D+++FK++ND+FGH VGD V+  ++ +          V RLGG+EF  A  
Sbjct: 464 KSPLSILYLDLNHFKEVNDSFGHDVGDLVLKKITKRFKSCLREGDLVARLGGDEFVFALP 523

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQAL 244
            +  + AA +A  + ++IE   INI  G S+ I+ S G+A      E I  ++  AD  +
Sbjct: 524 DTDAENAAKVAKRIIEVIEK-PINIK-GKSVKISGSIGVAVFPDDGENIDQLLKHADMNM 581

Query: 245 YVAKK 249
           Y  K+
Sbjct: 582 YRDKR 586


>gi|121594721|ref|YP_986617.1| diguanylate cyclase/phosphodiesterase [Acidovorax sp. JS42]
 gi|120606801|gb|ABM42541.1| diguanylate cyclase/phosphodiesterase [Acidovorax sp. JS42]
          Length = 756

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 10/182 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           +++      RI  ++  D L+ L N           I         L+++F D+D FK +
Sbjct: 316 IQDRQRDQERIYWMAHYDALTELPNRVLLAERGQDAIRQAQESGAPLAVMFLDLDNFKHV 375

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+ GH +GD ++  ++ +L         V RLGG+EF     G++ Q AA +A  +++ 
Sbjct: 376 NDSLGHRIGDALLVEIAQRLRTTVRQRDTVARLGGDEFVLLLPGANAQGAARVAAKMQEA 435

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
               Q        + + +S GIA    H     T+I  AD A+Y AK  GRN    F+  
Sbjct: 436 --ALQPVHIQHHELSLALSMGIALFPEHGSDFETLIQSADTAMYRAKADGRNSFRFFTPT 493

Query: 262 EN 263
             
Sbjct: 494 MQ 495


>gi|95930766|ref|ZP_01313499.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133246|gb|EAT14912.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 678

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 83/188 (44%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
             +     +  RI +L+  D L+GL N + F   L            + +++F D+D FK
Sbjct: 236 QDITRRKEAEERIRELAYYDSLTGLANRTLFNDRLDQVMARSRRRQSRFALMFLDLDRFK 295

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDL 199
            +ND  GH VGD ++   +++L         V RLGG+EF        E      +A+ +
Sbjct: 296 GVNDTLGHAVGDAMLRQAAERLNECLRENDTVARLGGDEFVIILSDYKEDANLPRVADKI 355

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
            K + +S  ++     ++ + S GIA         + ++  AD A+Y AK+SG +    +
Sbjct: 356 LKAL-SSPFDLGV-REVYSSTSVGIAIYPDDGDEATDLLRHADMAMYAAKESGGDTFRFY 413

Query: 259 SDIENNTC 266
           S   N   
Sbjct: 414 SSEMNARA 421


>gi|320353047|ref|YP_004194386.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Desulfobulbus propionicus DSM 2032]
 gi|320121549|gb|ADW17095.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfobulbus propionicus DSM 2032]
          Length = 888

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 11/180 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
            I KEL  S + + +L+  D L+GL N   F         K       ++++F D+D FK
Sbjct: 442 RIEKELRESQSHLYRLAHHDPLTGLPNRLLFRDRFAQAISKAERNRSGVAVLFLDLDRFK 501

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
            IND  GH VGD ++  ++ +L         V RLGG+EF          ++A+++A+ +
Sbjct: 502 SINDTLGHDVGDALLVEVAARLQRQCRQSDTVARLGGDEFVFILEAIHDRKDASVVADKI 561

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +      ++ G  + IT S GIA        +  +I  AD ALY AK+ GR+    +
Sbjct: 562 MAAL--GVPVLAKGHELTITTSIGIALFPLDGATMEEVIKCADLALYAAKEIGRSNYQFY 619


>gi|307824446|ref|ZP_07654671.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
 gi|307734430|gb|EFO05282.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
          Length = 351

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 12/179 (6%)

Query: 91  KELFISYNRISQL---SRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFK 140
           KE+ +    ++     ++ D L+GLLN  AF   L  Y E       +L ++  DID+FK
Sbjct: 169 KEMQLLRQELAHARETAKTDALTGLLNRRAFDQKLNEYIEIHKQNDVELCLLILDIDHFK 228

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND FGH +GD V+ + ++ +           R GGEE A     +   +A  +A  +R
Sbjct: 229 QVNDTFGHQMGDNVLRYTANLMKQHITEHHCAARYGGEEMAIIMPNTPLNKAMEIAEKIR 288

Query: 201 KIIENSQINISSGPS--IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +    + +         +TIS G++     + I ++I RAD A+Y AK +GRN+V+ 
Sbjct: 289 TSLAQHPLKLKGSKKSIGKVTISIGVSSFKINDSIESLIERADMAMYRAKDNGRNQVMA 347


>gi|254247989|ref|ZP_04941310.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
 gi|124872765|gb|EAY64481.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
          Length = 496

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 92/200 (46%), Gaps = 14/200 (7%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---- 128
           +  I +SLLLG    + L+    + + +  L+R D L+GL N  +F   L +   +    
Sbjct: 301 VAFIALSLLLG----AQLRRRMRAESELVLLARTDGLTGLSNRRSFGEVLDNEWRRARRA 356

Query: 129 ---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAA 184
               S++F D+D FK  ND +GH  GD  +A ++  +      P     R GGEEF    
Sbjct: 357 RSVFSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTAARYGGEEFVVLL 416

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQ 242
             + +  AA +A  +R  I+   +  +      +T S G+A     +      +I  AD+
Sbjct: 417 PDTPQTGAAQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPDQEGQPDAVIKAADE 476

Query: 243 ALYVAKKSGRNRVVCFSDIE 262
           ALY AK +GRN+V      E
Sbjct: 477 ALYYAKATGRNKVAALQPAE 496


>gi|78358791|ref|YP_390240.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78221196|gb|ABB40545.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 436

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 68/192 (35%), Positives = 99/192 (51%), Gaps = 11/192 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
           V++S+   ++L     S++ E  +    + + +R D L+GL N  A        ++ L  
Sbjct: 230 VLVSLVFGIMLMMGVSSMINERLVQM--LEKEARTDPLTGLGNRRALYTAAAHHVARLHR 287

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
             E L I+  D+D FK +ND FGHP GD ++   +  L   F     + R GGEEF A  
Sbjct: 288 LCEPLVILVMDLDRFKSVNDKFGHPAGDALLRHFAAILQKQFRGTDQLFRFGGEEFVALL 347

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQA 243
             S E+ A  LA  LR+ +    + +  G SI +T+S GIA    +E  I+  + RADQA
Sbjct: 348 QPSDERGAVCLAERLRREVAACPLQL-GGASIAVTVSIGIANMLPEEPDITRALGRADQA 406

Query: 244 LYVAKKSGRNRV 255
           LY AK  GRNRV
Sbjct: 407 LYKAKAGGRNRV 418


>gi|82702732|ref|YP_412298.1| diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis
           ATCC 25196]
 gi|82410797|gb|ABB74906.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosospira multiformis ATCC 25196]
          Length = 688

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 19/204 (9%)

Query: 74  ISITIS--------LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-- 123
           +S+TIS        ++  Y     + +   S  RI  L+  D L+GL N + F   +   
Sbjct: 222 VSVTISPVKDNAGHIVGAYKIAHDITQRKESLKRIEYLAHYDLLTGLPNRALFTDRMRIA 281

Query: 124 -----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                 Y  +L+++F D+D FK IND+ GH +GDK++  +++++         V RLGG+
Sbjct: 282 IENASRYAFRLALLFVDLDRFKLINDSLGHAIGDKLLRAVAERMQSTVRQADTVSRLGGD 341

Query: 179 EFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTI 236
           EF        +  EAA +A  L  ++  SQ        + +T S GI+      + ++++
Sbjct: 342 EFVVLLGRIHTATEAARVAEKLIAVL--SQPYQIEQHELLLTASVGISIYPDSGKDVNSL 399

Query: 237 IYRADQALYVAKKSGRNRVVCFSD 260
           +  AD ++Y AK  GRNR   +S+
Sbjct: 400 MRNADVSMYSAKGQGRNRYQFYSE 423


>gi|325273046|ref|ZP_08139356.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas sp. TJI-51]
 gi|324101819|gb|EGB99355.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas sp. TJI-51]
          Length = 1247

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 87/181 (48%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           + +  L  +  ++   +  D L+GL N + F + L +        N + +++F D+D FK
Sbjct: 791 ADISSLKHAQAKLDYQAHHDPLTGLPNRALFENRLQAALACAQVSNRQGAVLFLDLDRFK 850

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            IND+ GHPVGD ++  ++ +L         V RLGG+EF     G  +  +A+ +AN L
Sbjct: 851 HINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFIILLPGLHKPSDASSIANKL 910

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                      +       + S GI+        ++T+I  AD A+Y +K  GRNRV  +
Sbjct: 911 LACFNA--PFQAGEHEFFTSASIGISLYPQDGSDVATLIRNADAAMYRSKAKGRNRVEAY 968

Query: 259 S 259
           +
Sbjct: 969 T 969


>gi|323138821|ref|ZP_08073885.1| response regulator receiver modulated diguanylate cyclase
           [Methylocystis sp. ATCC 49242]
 gi|322395969|gb|EFX98506.1| response regulator receiver modulated diguanylate cyclase
           [Methylocystis sp. ATCC 49242]
          Length = 457

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 60/191 (31%), Positives = 92/191 (48%), Gaps = 14/191 (7%)

Query: 81  LLGYISGSILKE-----LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEK 128
           L+  +   + ++     L  +     +L+ +D L+GL N     S L S           
Sbjct: 264 LVARVRTQLRRKRYADSLRDNVQAAIELAVVDALTGLNNRRFLESHLASALEHAAHNGRP 323

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS++  DID+FK +ND +GH  GD+V+   + ++  V      V RLGGEEF      + 
Sbjct: 324 LSLMILDIDHFKSVNDTYGHDAGDEVLKVFAQRIKRVVRGADLVCRLGGEEFVVVMPDTP 383

Query: 189 EQEAAILANDLRKIIENSQINIS--SGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
              A  +A  +R  +E  Q  I   +  +I +T S G+AER        ++ RAD+ALY 
Sbjct: 384 LVVAEKVAERVRAAVEGGQFPIDPAATRTIPVTTSIGLAERGADANADALLRRADKALYG 443

Query: 247 AKKSGRNRVVC 257
           +K SGRNRV  
Sbjct: 444 SKASGRNRVTA 454


>gi|271501910|ref|YP_003334936.1| PAS/PAC sensor-containing diguanylate cyclase [Dickeya dadantii
           Ech586]
 gi|270345465|gb|ACZ78230.1| diguanylate cyclase with PAS/PAC sensor [Dickeya dadantii Ech586]
          Length = 483

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 87/183 (47%), Gaps = 11/183 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDI 136
           Y S   + +L  S   +  L++ D L+G+ N   F                 LS++  DI
Sbjct: 290 YGSMLDITDLKQSETLLQVLAQTDSLTGIANRRHFDERYQQLWRQHESIQMPLSLLMIDI 349

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           D FK+ ND++GH  GD  I  + + L   +  +   +GR GGEEF      +  Q+A  L
Sbjct: 350 DRFKRFNDSYGHSKGDACIKSVVETLAGQLPSSECLLGRYGGEEFTVVLPQTDYQQALAL 409

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGR 252
           A   R+ +E+ +I  +  P   +T+S G+A     +    ++ +   AD ALY AK  GR
Sbjct: 410 AERCRQAVESMEIPHTKSPQGVVTVSIGVAVARPGDAGSSMTQLSNDADDALYRAKHLGR 469

Query: 253 NRV 255
           NRV
Sbjct: 470 NRV 472


>gi|157738359|ref|YP_001491043.1| GGDEF/HAMP domain-containing protein [Arcobacter butzleri RM4018]
 gi|157700213|gb|ABV68373.1| GGDEF/HAMP domain protein [Arcobacter butzleri RM4018]
          Length = 581

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 81/292 (27%), Positives = 134/292 (45%), Gaps = 39/292 (13%)

Query: 2   TRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL 61
           T + ++++ I+  +EK  E +   TF +  +    I IA ++F   I+L  I + P Y L
Sbjct: 296 TLNKQEYIVIFADYEKITEPYLSQTFKLLLTF---IIIAFLMFPIMIYLSGIIIKPIYNL 352

Query: 62  --EYILVEN-------------LSLVIISITISLLLGYISG----------SILKELFIS 96
             + I ++N             L + ++S +   +   I+              +EL   
Sbjct: 353 VKQSIKIKNRKYNDVSQIESPILEIALLSASFENMAQSINSYQNSLEDKVKQRTEELLAK 412

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
              + +LS  D L+ L N      SL         YN   SI+  DIDYFK++NDNFGH 
Sbjct: 413 NEELLKLSITDNLTKLYNRVKLDKSLQDEINRSQRYNTNFSIILLDIDYFKKVNDNFGHQ 472

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD+V+   +  L         +GR GGEEF      +  ++A  +A+ +   I+  +  
Sbjct: 473 IGDEVLIESAQVLSKNIRNVDILGRWGGEEFLVICPETKIEDAIKVASHINAAIKLHKFT 532

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                   +TIS G+A    H + +  II  AD+ALY AK+ GR++V+ F +
Sbjct: 533 TYPN---TVTISLGVATFSKHIKNVDDIILNADKALYQAKEEGRDKVIAFYE 581


>gi|289625217|ref|ZP_06458171.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|330871345|gb|EGH06054.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 425

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 92/183 (50%), Gaps = 12/183 (6%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           +  Y+S    +        ++ +++  D L+GL N  A   +L           +  S++
Sbjct: 237 ITHYVSISQDVTTRLGREQKLLEIAHSDPLTGLNNRRAAEHTLERLIDTARISGKPFSLI 296

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK +ND +GHP GD+V+  ++  L           R GGEEF      SS   A
Sbjct: 297 IGDIDHFKSVNDRYGHPAGDRVLTSVAVILKQRIRLQDVAARWGGEEFLILVPDSSLDHA 356

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           A LA+ +R+ +E   I      +  +TIS G+A+    E  +++I RA++ALY AK+ GR
Sbjct: 357 AELADRIREGVEGLLIP----NTGSVTISLGVAQLSPGETAASLIQRAEKALYQAKRRGR 412

Query: 253 NRV 255
           NRV
Sbjct: 413 NRV 415


>gi|288956938|ref|YP_003447279.1| GGDEF domain-containing protein [Azospirillum sp. B510]
 gi|288909246|dbj|BAI70735.1| GGDEF domain-containing protein [Azospirillum sp. B510]
          Length = 385

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 67/254 (26%), Positives = 117/254 (46%), Gaps = 20/254 (7%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV 72
           L   + L S  P   ++  S        + +F A + LF     P+  LE+ +      +
Sbjct: 146 LRRVEQLPSCLPLETVLTLSGL------SFLFGAGVILFVADFVPWLALEFFVQ-----I 194

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-SI 131
           + +  I++L+  I+         +  +++ ++ +D L+G+ N         S+     +I
Sbjct: 195 LGNFAIAILIYNIATD------RAERKLALMAELDSLTGIGNRRWLEKMAPSHLSPGDTI 248

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
            + D+D+FK+IND FGH  GD V+  ++  L  +      + R+GGEEF          E
Sbjct: 249 FYIDLDHFKRINDRFGHAAGDTVLVAVAATLRNLKRPEDVLARMGGEEFLLFLAELRVSE 308

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250
           A  +A  +R+ I+        G  + +T S G+A+     EP   +++ AD ALY AK  
Sbjct: 309 ALTIAERIREAIQAIPFQY-QGIPLGVTASIGVAQVSRQGEPWPELVHAADMALYEAKHG 367

Query: 251 GRNRVVCFSDIENN 264
           GRNRVV  S +  +
Sbjct: 368 GRNRVVHASQVSQD 381


>gi|218249056|ref|YP_002374427.1| response regulator receiver modulated PAS/PAC sensor-containing
            diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC
            8801]
 gi|218169534|gb|ACK68271.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Cyanothece sp. PCC 8801]
          Length = 1514

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 11/187 (5%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
             + E   S  R++ ++  D L+ L N     + L            KL++VF D+D FK 
Sbjct: 1068 DVTERKTSQERLNYMAHHDHLTDLPNRLLLKARLDQSIQQATRKRTKLAVVFIDLDRFKH 1127

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
            IND+ GH  GD ++  L+ +L  V  +   V R+ G+EF A        Q A+++   L 
Sbjct: 1128 INDSMGHAAGDALLQQLAQRLRQVLRSSDTVARISGDEFVAVLEDIEDIQHASMVVAKLM 1187

Query: 201  KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
             + E  +     G  IH+T S G++         + ++  AD A+Y AK+ GRN    ++
Sbjct: 1188 TVFE--EPFPLEGQIIHMTSSMGLSLFPDDGMDTAILLRNADSAMYRAKEEGRNTYCFYA 1245

Query: 260  DIENNTC 266
            +   +  
Sbjct: 1246 EEMTSAA 1252


>gi|254411539|ref|ZP_05025316.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196182040|gb|EDX77027.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 505

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 14/206 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE----- 127
           +I+  +  L+  I   +   LF +  ++  L  ID L+G+ N   F   +    +     
Sbjct: 298 LIAAQLGTLMQRI--KVETALFEANQKLKYLVTIDGLTGIANRRKFDQYIHREWQRLFRE 355

Query: 128 --KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAA 184
              LS++  DID+FK+ ND +GH  GD  +  ++ ++  +V      V R GGEEFA   
Sbjct: 356 QLPLSLILGDIDFFKRYNDTYGHQAGDDCLRNVATKIRLLVKRPADLVARYGGEEFAVIL 415

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKE--PISTIIYRAD 241
             ++ + A  +A  +R+ +E  +I       S ++T+S G++         +  +I +AD
Sbjct: 416 PNTNAKGAIHVAETIRQGVETLKIPHGGSESSKYVTLSLGVSSLIPNSLVNVEGLINQAD 475

Query: 242 QALYVAKKSGRNRVVC-FSDIENNTC 266
           QALY AK  GRN+ V  +S  EN+ C
Sbjct: 476 QALYRAKAGGRNQTVAEYSIPENSYC 501


>gi|288957137|ref|YP_003447478.1| oxygen sensor diguanylate cyclase/c-di-GMP phosphodiesterase
           [Azospirillum sp. B510]
 gi|288909445|dbj|BAI70934.1| oxygen sensor diguanylate cyclase/c-di-GMP phosphodiesterase
           [Azospirillum sp. B510]
          Length = 750

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 11/179 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           E   +   I++L+  D L+GL N               G   + ++++F DID FK +ND
Sbjct: 290 EHDRARAEINRLAYFDTLTGLPNRQLLADRATAALALAGRTRQSVTVIFLDIDRFKTVND 349

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH VGD+++  ++ +L  +F     + RLGG+EF A   G     A++LA  +   + 
Sbjct: 350 SLGHAVGDRLLVEVTARLRPLFIEGDTLARLGGDEFVALLPGCDAAHASLLAERVLAAL- 408

Query: 205 NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF-SDI 261
            S     +  ++  T S GIA          T++ +AD A+Y AK++GRNR   F SDI
Sbjct: 409 -SVPMTVADLTLTPTASIGIAVHPDDGLDFDTLLRQADAAMYRAKQAGRNRCHFFRSDI 466


>gi|220929725|ref|YP_002506634.1| diguanylate cyclase [Clostridium cellulolyticum H10]
 gi|220000053|gb|ACL76654.1| diguanylate cyclase [Clostridium cellulolyticum H10]
          Length = 363

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 79/247 (31%), Positives = 123/247 (49%), Gaps = 23/247 (9%)

Query: 28  MIYFSIFFSIFIATVIFIA--NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI 85
            +  +I+ ++    V F    N F   + ++P++         L   I+S T+   + Y+
Sbjct: 129 WLISTIYITVLSCGVYFYTFKNDFSILLSISPYF--------ILGTFIVSYTVYKYMIYL 180

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           +      +   + ++ + S  D L+GL N   F       I    S N K S++  DID+
Sbjct: 181 NN-----MRALFKKLKEESTKDYLTGLNNVREFDKLFRLVIDRAVSNNHKFSLLLIDIDF 235

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND  GH  GDKV+  +   L         + R GGEEF+     +S  +A  +A  
Sbjct: 236 FKKINDTHGHQAGDKVLKEIGKILRHNCRANDKISRNGGEEFSILLENASNSKAIEIAER 295

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           +R+IIE ++  I+SG  I++T+S GI+        I+ II RAD ALY AK+SGRN VV 
Sbjct: 296 IRRIIEENEFEITSGRKINVTVSIGISSYPETVSDITQIIERADGALYKAKRSGRNLVVT 355

Query: 258 FSDIENN 264
            S I +N
Sbjct: 356 DSVISDN 362


>gi|288940063|ref|YP_003442303.1| PAS/PAC sensor-containing diguanylate cyclase [Allochromatium
           vinosum DSM 180]
 gi|288895435|gb|ADC61271.1| diguanylate cyclase with PAS/PAC sensor [Allochromatium vinosum DSM
           180]
          Length = 433

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 87/164 (53%), Gaps = 8/164 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+G+LN   F               ++LS+   DID+FK+IND  GH VGD
Sbjct: 266 LRELATTDPLTGVLNRRGFSEQAQGRLAGALRDGQELSLAMIDIDFFKRINDTHGHAVGD 325

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  L+  L   F     +GRLGGEEFA    G++ +++ +L +  R  +  + + +  
Sbjct: 326 QALIHLAGLLRTSFRESDVIGRLGGEEFAVLLPGATLEQSHVLMDRFRMRLAATPLKLHD 385

Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G  +  T S G+AE    K  ++ +   AD ALY AK SGRNRV
Sbjct: 386 GRWLGFTASIGVAELNPEKAGLAALTKAADSALYAAKHSGRNRV 429


>gi|330895491|gb|EGH27803.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 1002

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 15/192 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + E   S +RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 551 SDISERRASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQAWVVLMFLDLDRFK 610

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-----L 195
            IND+ GH  GD+++  ++ +L+        V R+GG+EF         +EAA+     +
Sbjct: 611 PINDSLGHAAGDRMLQEMATRLLACVSVDDTVARMGGDEFTLLLEPDETREAALNRAIHV 670

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  +   +      +  G    +T S GIA      + +S ++  AD A+Y AK+ G+N 
Sbjct: 671 AERILTSL--ITPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNN 728

Query: 255 VVCFSDIENNTC 266
              +    N T 
Sbjct: 729 FQFYQADMNATA 740


>gi|313498336|gb|ADR59702.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas putida BIRD-1]
          Length = 699

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 83/185 (44%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKL-SIVFFDI 136
                   E   ++ +I  ++  D L+GL N + F   L         N KL + +  D+
Sbjct: 256 LFVAEDATEELAAHAQIHHMAHHDALTGLPNRTLFHERLRQALLRGSENAKLTAALCLDL 315

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-IL 195
           D FK IND+ GH  GDK++  L  +L         + RLGG+EFA    G   ++AA   
Sbjct: 316 DNFKNINDSLGHAFGDKLLRELGKRLRRELREHDTLARLGGDEFAVVLTGLEGRDAACNT 375

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
           A  L K I  S      G    + +S GIA           ++  AD ALY AK++GRNR
Sbjct: 376 AQRLIKAI--SPPFQIEGHQFVVGVSIGIAIAPDDNDQAEQLLGYADMALYQAKRNGRNR 433

Query: 255 VVCFS 259
             CF 
Sbjct: 434 YECFD 438


>gi|254787818|ref|YP_003075247.1| response regulator receiver domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237685546|gb|ACR12810.1| response regulator receiver domain protein [Teredinibacter turnerae
           T7901]
          Length = 319

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 108/220 (49%), Gaps = 17/220 (7%)

Query: 57  PFYGLEYILVENLSLVIISIT------ISLLLGYISGSILK--ELFISYNRISQLSRIDC 108
           P   +   + +N +++ ++ T      I L++  ++   +   +L  +  ++  LSR D 
Sbjct: 101 PITSIAEYMYQNSTVIPLTDTRGQVNHICLIIYDVTEVAVNRLQLQAANAKLHTLSRTDG 160

Query: 109 LSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GLLN  ++ + L         +    S++ FDID+FK++ND +GHP GD+VI   +  
Sbjct: 161 LTGLLNRKSWETELHVEFRRFQRHQHGSSLLMFDIDHFKRVNDTYGHPTGDEVIRRTAKV 220

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +          GR GGEEFA     +    A ++A  LR  IE   I    G S+  TIS
Sbjct: 221 VKDALRDIDVAGRYGGEEFAVILTDTDASGAKVVAERLRTTIEQLTITH-EGNSLQFTIS 279

Query: 222 AGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            GIAE           I  AD+ALY AK +GRN  V FS+
Sbjct: 280 LGIAELNPSITDPGAWIEAADRALYKAKHAGRNNSVIFSN 319


>gi|171317409|ref|ZP_02906602.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Burkholderia ambifaria MEX-5]
 gi|171097426|gb|EDT42267.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Burkholderia ambifaria MEX-5]
          Length = 860

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
             + E  +   RI  L+  D L+GL N +         +S      ++++++  D+D FK
Sbjct: 250 QDITERKMQQGRIEYLANHDALTGLPNRNLLGDRMEQAMSQARRTGQRVAVMVLDLDRFK 309

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND+FGH VGD ++  ++ +L         V RLGG+EF    +  +++ +A  +A  +
Sbjct: 310 HINDSFGHSVGDGLLRVVAARLKRSVRDGDTVARLGGDEFVVMLVNLATQSDADAIARKI 369

Query: 200 RKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                  +     G  +H+T S G++          T++  AD ALY AK+ GRN    +
Sbjct: 370 LDTF--VEPFTLDGHDLHVTTSVGVSLCPTDGADAETLLKTADAALYSAKEHGRNCYRFY 427

Query: 259 S 259
           +
Sbjct: 428 T 428


>gi|303245624|ref|ZP_07331907.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio fructosovorans JJ]
 gi|302492887|gb|EFL52752.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio fructosovorans JJ]
          Length = 418

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 62/175 (35%), Positives = 91/175 (52%), Gaps = 9/175 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           E+     ++ + S  D L+ L N   F          L    E +++   DID+FK++ND
Sbjct: 246 EMLEYIQKLRETSIRDPLTSLYNRRHFFETSKDCYKRLARGEEPMTLAMLDIDHFKRVND 305

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGD+V+  ++  L   F     V RLGGEEF   A+G   Q+A    NDLR  IE
Sbjct: 306 TYGHAVGDEVLKHVAHGLSNRFRGRDIVARLGGEEFCVLAMGLEGQQALAAFNDLRNSIE 365

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            S+   +   S+ +TIS G+ ++     I  ++  AD ALY AK++GRNRVV   
Sbjct: 366 RSKAK-AGNISVGVTISIGLCDKPKG-SIENMLADADAALYKAKRTGRNRVVWAD 418


>gi|114704944|ref|ZP_01437852.1| periplasmic sensor diguanylate cyclase (GGDEF) [Fulvimarina pelagi
           HTCC2506]
 gi|114539729|gb|EAU42849.1| periplasmic sensor diguanylate cyclase (GGDEF) [Fulvimarina pelagi
           HTCC2506]
          Length = 367

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 103/220 (46%), Gaps = 10/220 (4%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQL 103
             +NI L +I   P        +  +  + ++ T+ +L+     S       S  R+S  
Sbjct: 141 LASNIPLLFILTVPVPNAAEHFMRAVGPLTVADTLGVLVLGRVLSDAWRAHQSAERLSVE 200

Query: 104 SRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  D L+GL N   F                 +S++  D+D+FK+IND+FGH  GD V+ 
Sbjct: 201 ATTDPLTGLSNRRHFERRVGPLLQQANHQGTPVSLLVIDVDHFKRINDSFGHEAGDTVLV 260

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
           ++++ +         + R GGEE   A  G+  + A  +A  +R +IE     I  G   
Sbjct: 261 WIAEIVRSQVRGCDIIARYGGEELVVAMPGADSRRAMTVAERIRAVIEAKG-RIEPGDGH 319

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            IT+S G++ R  +   + +   AD+ALY AK+ GRNRVV
Sbjct: 320 RITVSIGVSTRLAR--YADLFSAADEALYAAKRQGRNRVV 357


>gi|330829722|ref|YP_004392674.1| sensory box/GGDEF domain-containing protein [Aeromonas veronii
           B565]
 gi|328804858|gb|AEB50057.1| Sensory box/GGDEF domain protein [Aeromonas veronii B565]
          Length = 431

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 106/248 (42%), Gaps = 10/248 (4%)

Query: 17  KNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISI 76
           K LE+  P  F      +F  F ++ I    +      +          +E +++  I++
Sbjct: 179 KRLETLLPQRFRANHETYFKAFSSSPINSRPMHARASVMGLRRDGSEFPLE-VTIAKINL 237

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129
             +  +  I    + E       +   +  D L+G+ N   F       +     +   +
Sbjct: 238 GPTTEMTAIL-RDISERARLVEELKVAATTDPLTGIANRRRFNELVNAEMQRCQRFGHTM 296

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  DID+FK++ND FGH  GD  I  L  ++         +GR GGEEF      +S 
Sbjct: 297 SLLLIDIDHFKEVNDTFGHQQGDLAILSLVKRISKQLREVDMLGRWGGEEFIVLLPETSL 356

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAK 248
           + A   A  +R  IE+    +     I +TIS GI A +   + +  ++ RAD ALY+AK
Sbjct: 357 ELAWASAERIRLAIESQHHALEGALEISLTISIGISASKGSHDTVEKMVRRADTALYLAK 416

Query: 249 KSGRNRVV 256
           K GRN   
Sbjct: 417 KQGRNCCR 424


>gi|325517996|gb|EGC97812.1| diguanylate cyclase [Burkholderia sp. TJI49]
          Length = 234

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 104/234 (44%), Gaps = 22/234 (9%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI------LK 91
           ++A  IF    FL        YG+   L    S   I  +   L+  +S S+      L+
Sbjct: 8   WLAHAIFAGGFFLLS------YGVVQALQTTRSFSAI-YSQEDLMSRLSESMARTESALQ 60

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL  +  ++  ++  D ++G  N   FI+ +               ++  D+D FK IND
Sbjct: 61  ELRRTNQKLEYMAATDPMTGASNRRQFIAQVEREIVRAERDGTPFCLLALDLDNFKNIND 120

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH +GD+V+  +  Q +        + R+GGEEF A       + A + A  +R  I 
Sbjct: 121 AYGHQIGDEVLRGVVRQCLDAIRPAGGLARVGGEEFMALLPEMPLEGARMTAERVRSSIA 180

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S   +     + +T+S G+A+       +  ++   D+ LY AK+ GRNRVV 
Sbjct: 181 SSPFGL-DFKRVQVTVSVGVAQYGVDGSTVDALLRAVDERLYQAKREGRNRVVA 233


>gi|317130352|ref|YP_004096634.1| diguanylate cyclase with PAS/PAC sensor [Bacillus cellulosilyticus
           DSM 2522]
 gi|315475300|gb|ADU31903.1| diguanylate cyclase with PAS/PAC sensor [Bacillus cellulosilyticus
           DSM 2522]
          Length = 427

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 96/206 (46%), Gaps = 13/206 (6%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---- 118
           ++ V+ + +  I   IS +L  I    + E       I  ++  D L+GL N   F    
Sbjct: 222 WLKVDIIPIFEIGSKISKML--IVAKDITESKEYEKEIRFMAYHDPLTGLPNRGFFKEYM 279

Query: 119 ---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
              +      +E ++ +F D D FKQ+ND  GH  GDK +  ++ +L         + R+
Sbjct: 280 LMSLERAKKNSESMACLFLDCDNFKQLNDAHGHDAGDKFLQSVAKRLHSELQKDDMIARI 339

Query: 176 GGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF       +S+Q  + +A  L K+I N    +S G    IT S GIA      + +
Sbjct: 340 GGDEFNILLSQMNSKQHVSDVAQRLLKVI-NEPWPLSGG-EWEITASIGIALYPEDGDTM 397

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
            T++  AD ALY AK +GRN+   + 
Sbjct: 398 ETLLKHADIALYDAKNNGRNQYKWYD 423


>gi|89094787|ref|ZP_01167721.1| diguanylate cyclase (GGDEF domain) [Oceanospirillum sp. MED92]
 gi|89080952|gb|EAR60190.1| diguanylate cyclase (GGDEF domain) [Oceanospirillum sp. MED92]
          Length = 474

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 101/214 (47%), Gaps = 25/214 (11%)

Query: 61  LEYILVENLSLVIISITISL-LLGYISGSI----------LKELFISYNRISQLSRIDCL 109
           L+Y L   L L+I ++   + +  Y+   +          L+ L  +  ++  ++  D L
Sbjct: 268 LDYQL---LGLIIAAVICLIAIFSYLYWRLNAAKEKTQEALENLKKAQIKLELMATTDKL 324

Query: 110 SGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GL N +     L         YN    +V  D+D+FK++ND++GH VGD+V+   +D L
Sbjct: 325 TGLYNRTKIDELLQNELNRTERYNHDFGVVMIDVDFFKEVNDHYGHHVGDEVLKEYADIL 384

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                   + GR GG+EF      +  +   ++A+ L   I N +  +        T S 
Sbjct: 385 SNEIRRTDYAGRWGGDEFIVICPETDIEGLKLIASKLCDAIANHEFVVIGDG----TASL 440

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           GI+     + I+T++ RAD+ALY AK  GRN V 
Sbjct: 441 GISTPQDGDTITTLLNRADKALYQAKNDGRNTVR 474


>gi|253998125|ref|YP_003050188.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Methylovorus sp.
           SIP3-4]
 gi|313200192|ref|YP_004038850.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Methylovorus sp.
           MP688]
 gi|253984804|gb|ACT49661.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. SIP3-4]
 gi|312439508|gb|ADQ83614.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. MP688]
          Length = 738

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 11/190 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
           Y     + E   +   I+  +  D L+ L N   F   L            KL+I+F D+
Sbjct: 276 YGVARDITERKKAEQAITHQAYHDTLTDLPNRMLFKDRLTVAIHHAKRNKHKLAIMFLDL 335

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAIL 195
           D FK +ND  GH  GD+++  ++ +L         + R+GG+EF       ++  +A ++
Sbjct: 336 DRFKWVNDTLGHLYGDELLKQVAARLRNCMREQDTLARMGGDEFTMLLHELNQPDDATVI 395

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A  +    E  +  +     I I+ S GIA    H + I  +I RAD A+Y  K  G+N 
Sbjct: 396 AQKIFD--ELKRPFMLDDREIFISSSIGIAIYPDHGDSIENLIKRADIAMYHVKWRGKNG 453

Query: 255 VVCFSDIENN 264
              +    N+
Sbjct: 454 FQYYDPSMNS 463


>gi|170742049|ref|YP_001770704.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium sp. 4-46]
 gi|168196323|gb|ACA18270.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium sp. 4-46]
          Length = 990

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            +     +  R++ ++R D L+ L N + F   L         +     ++  D+D FK 
Sbjct: 524 DITARKEAEARVTHMARHDTLTDLPNRALFRERLEQRLAEIRRHGGHCVLLALDLDAFKA 583

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLR 200
           +ND+ GH  GD ++  ++ +   V      V RLGG+EFA    G+   +     A  L 
Sbjct: 584 VNDSLGHLAGDALLREIARRFRSVLRAEDTVARLGGDEFAILLGGTPRLESVMDFAERLV 643

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +   +     G  + + +S GIA    H E   T+   AD+ALY AK  GRN    F 
Sbjct: 644 ASVR--EPVTLEGQQVGVGVSIGIAIGPEHGEDADTLFRHADRALYRAKSDGRNTFRFFE 701

Query: 260 DIENNTC 266
              +   
Sbjct: 702 PAMDRAA 708


>gi|33602551|ref|NP_890111.1| hypothetical protein BB3576 [Bordetella bronchiseptica RB50]
 gi|33576990|emb|CAE34070.1| putative conserved membrane protein [Bordetella bronchiseptica
           RB50]
          Length = 540

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 86/175 (49%), Gaps = 8/175 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQIND 144
           ++ +++   + ++ Q S  D L+GLLN       L +    +  ++++  DID FK IND
Sbjct: 345 AVRRKIGTKFEQLRQDSLTDPLTGLLNRRGLEEYLRNTPWQDGAMTVLALDIDRFKIIND 404

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+VI  L+  L     T   + RLGGEEFA         +A  LA  +R+ IE
Sbjct: 405 THGHAAGDEVIQSLAGILRSSARTKDVLARLGGEEFAVLLPDVDVPQAPQLAERIRRSIE 464

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +         +  T+S G+A    H   +  ++  AD+ALY AK  GRNR   +
Sbjct: 465 AAPTE----AGVSYTVSIGVACYPAHGASLEAVMRCADEALYAAKAGGRNRTHLY 515


>gi|15598897|ref|NP_252391.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107103216|ref|ZP_01367134.1| hypothetical protein PaerPA_01004285 [Pseudomonas aeruginosa PACS2]
 gi|218890020|ref|YP_002438884.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254236612|ref|ZP_04929935.1| hypothetical protein PACG_02615 [Pseudomonas aeruginosa C3719]
 gi|254242396|ref|ZP_04935718.1| hypothetical protein PA2G_03141 [Pseudomonas aeruginosa 2192]
 gi|9949866|gb|AAG07089.1|AE004789_9 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|126168543|gb|EAZ54054.1| hypothetical protein PACG_02615 [Pseudomonas aeruginosa C3719]
 gi|126195774|gb|EAZ59837.1| hypothetical protein PA2G_03141 [Pseudomonas aeruginosa 2192]
 gi|218770243|emb|CAW26008.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
          Length = 347

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 88/177 (49%), Gaps = 12/177 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+GL N   F   L            +LS++  D+DYFK  N
Sbjct: 158 QQLLETNLVLQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYN 217

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD+ +  ++  +      +     R GGEEFA    G+S   A +LA  +R+ 
Sbjct: 218 DTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRT 277

Query: 203 IENSQINISS-GPSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRV 255
           +E+ QI+     P  H+T+S G++        +    +I  ADQALY AK +GRN+V
Sbjct: 278 VESLQISHDQPRPGSHLTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGRNQV 334


>gi|307150963|ref|YP_003886347.1| GAF sensors-containing diguanylate cyclase/phosphodiesterase
            [Cyanothece sp. PCC 7822]
 gi|306981191|gb|ADN13072.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Cyanothece sp.
            PCC 7822]
          Length = 1297

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 66/257 (25%), Positives = 116/257 (45%), Gaps = 22/257 (8%)

Query: 10   SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL 69
             I LCH + L+ +     ++   + F         +  + + +    P   L++ +    
Sbjct: 1050 EIALCHRELLKRYQVKANLVLPVVAFD-------QLWGLLIAHDCHQPRKWLDHEIT--- 1099

Query: 70   SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSL 122
              ++  ITI+  +    G + ++L  +   + +LS ID L+ + N   F          L
Sbjct: 1100 --LLSQITITAAIAIHQGELHQQLQNANLELKKLSAIDGLTQVANRHRFDVYLEQEWRRL 1157

Query: 123  GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFA 181
                  LS++  D+D+FK  ND +GH  GD  +  ++  +   V      V R GGEEFA
Sbjct: 1158 MRSRHSLSLILSDVDHFKWYNDTYGHLAGDHCLQQIARVIKTSVGRPADLVARYGGEEFA 1217

Query: 182  AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYR 239
                 +S + A  +A  +R+ ++N  I  +      +T+S G+A       +S   +I  
Sbjct: 1218 IVLPETSLKGALFVAEQIRQKVKNLTIPHTKSAYQCVTLSLGVASLIPSGALSPKALINA 1277

Query: 240  ADQALYVAKKSGRNRVV 256
            AD+ALY AK +GR+RVV
Sbjct: 1278 ADEALYQAKANGRDRVV 1294



 Score =  138 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 85/202 (42%), Gaps = 16/202 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEK- 128
           + ++ +LG     IL +  +++  I   +  D ++ L N   F   L       ++    
Sbjct: 401 LKLAEILGLHLYMILTQQRLTH-LIHHQASYDPITQLPNWIIFNHRLALALVDATHGSNM 459

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF----VGRLGGEEFAAAA 184
           L ++  D++ FK+IND+ GH VGD ++   SD+L     +  F    + R  G  F    
Sbjct: 460 LGVLIIDLNQFKRINDSLGHGVGDYLLQKASDRLQNCLESYSFLEPLLARWHGAGFIVLL 519

Query: 185 LGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQ 242
              +   EA   +  L    +  +       +I++ +S GIA      +    ++  A+ 
Sbjct: 520 SQLAYVDEAINFSQKLLNDFQ--EPFYVQSQAIYLGVSIGIALAPYDGDSSEVLLKNAES 577

Query: 243 ALYVAKKSGRNRVVCFSDIENN 264
           A+Y AK+ G+N    +    N 
Sbjct: 578 AMYQAKQQGKNTYQLYRPGSNQ 599


>gi|119946701|ref|YP_944381.1| diguanylate cyclase [Psychromonas ingrahamii 37]
 gi|119865305|gb|ABM04782.1| diguanylate cyclase [Psychromonas ingrahamii 37]
          Length = 409

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 118/245 (48%), Gaps = 14/245 (5%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLE--YILVENLSLVIISITISLL 81
           P+  +    +F        + I+ I + ++G   +      +++  ++ L ++   ISL 
Sbjct: 169 PYFILAMLGLFPLTISGGALVISLISIQFVGFELWISNNSYWVIFNDIWLFLLFAGISLW 228

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDY 138
           L     S+L +L+         S +D L+ L+N         +  EK     ++ FD+D 
Sbjct: 229 LQVGQLSMLMKLYRE-------STVDPLTKLINRRVLFRLAANDLEKQSNFCLIMFDLDR 281

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND +GH VGDKV+  ++  +         V R GGEEF A       ++A  +   
Sbjct: 282 FKRINDTYGHGVGDKVLVSIAQVIQRELRQSDIVARFGGEEFVAILPEIGLEQATRIGQR 341

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +R++I    + ++ G  I  T S G+ ++   E +   + RAD  LY AK++GRN+VV  
Sbjct: 342 IRRMISQESVQLTDGLVIKTTSSIGVTQKRVNESLDETLKRADDFLYYAKENGRNQVV-- 399

Query: 259 SDIEN 263
           SDI+N
Sbjct: 400 SDIDN 404


>gi|91774784|ref|YP_544540.1| diguanylate cyclase [Methylobacillus flagellatus KT]
 gi|91708771|gb|ABE48699.1| diguanylate cyclase [Methylobacillus flagellatus KT]
          Length = 469

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 115/248 (46%), Gaps = 17/248 (6%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
             +IF S  IA +  + ++    I  TPF    + +   LSL   +  +++L+  +S   
Sbjct: 214 LVTIFLS--IAALSHLCHVSHLLIDNTPFSA-NWYMAHLLSLFSFTTLLAVLILQLS-QF 269

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQI 142
            ++L  S+  + + +  D L+G+ N   F                 +S++  DID+FK  
Sbjct: 270 TRDLADSHAYLMEKAHKDSLTGIYNRGYFDETAELEWRRAQRNGTPISLLMLDIDHFKGY 329

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GDK +  ++  L         FV R GGEEF      ++ +    +A  L  
Sbjct: 330 NDQFGHVKGDKCLKKIAQALHANMQRPGDFVARFGGEEFVVLLPATTAEGCHAMAQKLHL 389

Query: 202 IIENSQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            ++  +I  S+G    +++S G A          I+ ++ +AD ALY AK+ GRNR+V +
Sbjct: 390 AVQKLKI--SAGDHRRVSVSIGHATWNGPYENGSINELLSQADLALYTAKRLGRNRIVRY 447

Query: 259 SDIENNTC 266
            D+ ++  
Sbjct: 448 EDLAHSLA 455


>gi|117922261|ref|YP_871453.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. ANA-3]
 gi|117614593|gb|ABK50047.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. ANA-3]
          Length = 1505

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 91/188 (48%), Gaps = 11/188 (5%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            + + E   +   +  L+  D L+GL N + F   L          N  ++++F D+D FK
Sbjct: 1063 TDITERKKAEEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDRFK 1122

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDL 199
             IND+ GH +GD ++  ++ +L         V RLGG+EF     G ++ +AA +++  +
Sbjct: 1123 HINDSMGHHIGDLLLKAVAHRLQNAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKV 1182

Query: 200  RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             K  +     +    S+ I+ S GI+   +  E + ++I  AD A+Y AK  GRN    +
Sbjct: 1183 LKAFQA--PFLLDDKSLTISTSIGISLYPNDAEDVDSLIKFADTAMYHAKALGRNNFQFY 1240

Query: 259  SDIENNTC 266
            ++  N   
Sbjct: 1241 TNKLNEMA 1248


>gi|307721789|ref|YP_003892929.1| response regulator receiver modulated diguanylate cyclase
           [Sulfurimonas autotrophica DSM 16294]
 gi|306979882|gb|ADN09917.1| response regulator receiver modulated diguanylate cyclase
           [Sulfurimonas autotrophica DSM 16294]
          Length = 427

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 11/197 (5%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------ 120
           E  S +I    I+     ++ + + E+      I++ +  D L+GL N + F        
Sbjct: 232 EQKSFLINISQINETQFLMNFTDVTEIEKQREEITKKANHDMLTGLYNRNKFEEVFEYEL 291

Query: 121 -SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
             +  Y   LS+   DID+FK  ND +GH +GD+V+  +++ L     +   + R GGEE
Sbjct: 292 SQVKRYGYDLSLAIADIDHFKFFNDTYGHLIGDEVLKLVANSLTSCTRSSDTLARWGGEE 351

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F      +S  +A +L    RK++E             IT+S G+      + + +++ R
Sbjct: 352 FVMLFSQTSFDDALVLLEKCRKLVEGLNYKEYG----KITLSFGVTSYKEGDTLDSMLQR 407

Query: 240 ADQALYVAKKSGRNRVV 256
           AD+ALY AK +GRN+V+
Sbjct: 408 ADEALYEAKANGRNKVI 424


>gi|134094165|ref|YP_001099240.1| putative sensor/regulator protein [Herminiimonas arsenicoxydans]
 gi|133738068|emb|CAL61113.1| putative two-component response regulator [Herminiimonas
           arsenicoxydans]
          Length = 818

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 98/222 (44%), Gaps = 13/222 (5%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSI--LKELFISYNRISQLSRIDCLSGL 112
           L  ++    + +  L +  +S T    +G+  G +  + ++      +   +  D L+GL
Sbjct: 338 LRNYHKDGSMFLNELYIAPVSDTSGGAVGHFVGVLYDVTQIKRYQEDLEHQANYDTLTGL 397

Query: 113 LNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N +               ++  LS+VF D+D FK +ND+ GH  GD++IA +  +L   
Sbjct: 398 ANRNLLNERTQQALLQARRHDHFLSLVFIDLDNFKLVNDSMGHGAGDELIANVGSRLQTC 457

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAGI 224
                 V R+GG+EF       S  ++ A +   ++   E  +     G  I +T S G+
Sbjct: 458 VRDGDTVARIGGDEFVLLLTNQSVSDSNAGVMQRIQA--ELIKPMWIRGQEIVVTCSMGV 515

Query: 225 AERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           A      E   +++  AD A+Y AK SGRN    ++   N T
Sbjct: 516 ARFPEDGEDSESLLANADTAMYRAKSSGRNNFQFYTKEMNAT 557


>gi|298490636|ref|YP_003720813.1| response regulator receiver modulated diguanylate cyclase ['Nostoc
           azollae' 0708]
 gi|298232554|gb|ADI63690.1| response regulator receiver modulated diguanylate cyclase ['Nostoc
           azollae' 0708]
          Length = 317

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 9/176 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
           +L+E      ++  L+  D L+G+ N    +       ++        +++  DID+FK+
Sbjct: 138 LLQEQVELVKQLETLANTDPLTGVWNRRYLLMIAEQEIKRSQLYNFSFAVLLIDIDHFKK 197

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH +GD VI F++  ++    +    GR GGEEF A    +   EA I+A  +R+
Sbjct: 198 INDTYGHSIGDDVIIFMTKTVLYHLQSTDCFGRFGGEEFVALLPETDMDEAMIVAECIRE 257

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            I+N  I       + ITIS G++     +  I +I+ RADQALY AK  GRNRV+
Sbjct: 258 NIKNQYITFEE-QKVSITISIGVSSYRTGDKNIDSILRRADQALYQAKHEGRNRVI 312


>gi|17987212|ref|NP_539846.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 1
           str. 16M]
 gi|260564059|ref|ZP_05834545.1| diguanylate cyclase [Brucella melitensis bv. 1 str. 16M]
 gi|260754794|ref|ZP_05867142.1| diguanylate cyclase [Brucella abortus bv. 6 str. 870]
 gi|260883811|ref|ZP_05895425.1| diguanylate cyclase [Brucella abortus bv. 9 str. C68]
 gi|261214045|ref|ZP_05928326.1| diguanylate cyclase [Brucella abortus bv. 3 str. Tulya]
 gi|265991139|ref|ZP_06103696.1| diguanylate cyclase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994975|ref|ZP_06107532.1| diguanylate cyclase [Brucella melitensis bv. 3 str. Ether]
 gi|265999459|ref|ZP_05466481.2| diguanylate cyclase [Brucella melitensis bv. 2 str. 63/9]
 gi|17982883|gb|AAL52110.1| diguanylate cyclase/phosphodiesterase domain 1 (ggdef) [Brucella
           melitensis bv. 1 str. 16M]
 gi|260154075|gb|EEW89167.1| diguanylate cyclase [Brucella melitensis bv. 1 str. 16M]
 gi|260674902|gb|EEX61723.1| diguanylate cyclase [Brucella abortus bv. 6 str. 870]
 gi|260873339|gb|EEX80408.1| diguanylate cyclase [Brucella abortus bv. 9 str. C68]
 gi|260915652|gb|EEX82513.1| diguanylate cyclase [Brucella abortus bv. 3 str. Tulya]
 gi|262766088|gb|EEZ11877.1| diguanylate cyclase [Brucella melitensis bv. 3 str. Ether]
 gi|263001923|gb|EEZ14498.1| diguanylate cyclase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094093|gb|EEZ18015.1| diguanylate cyclase [Brucella melitensis bv. 2 str. 63/9]
          Length = 255

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 118/232 (50%), Gaps = 14/232 (6%)

Query: 43  IFIANIFLFYIG---LTPFYGLEY--ILVENLSLVIISITISLLLGYISGS--ILKE--- 92
           +   ++ LF +G   +T F+  E   ++  +LSL    + I     +I      LKE   
Sbjct: 1   MLTLSVVLFCVGATSITAFWSGETPGLMAISLSLGFPLVMIFPFSAFIFLRYDKLKEAYA 60

Query: 93  -LFISYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGH 148
            L  S+  +   +RID ++GLLN  A   ++    S  E  +++  D D+FK IND+FGH
Sbjct: 61  QLEKSHVELQARARIDHMTGLLNREALFETMKISRSRIETGTLLVIDADHFKAINDSFGH 120

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+  
Sbjct: 121 GVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPF 180

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV   +
Sbjct: 181 HTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVVFDEE 232


>gi|146283894|ref|YP_001174047.1| GGDEF domain-containing protein [Pseudomonas stutzeri A1501]
 gi|145572099|gb|ABP81205.1| GGDEF domain protein [Pseudomonas stutzeri A1501]
          Length = 466

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 96/205 (46%), Gaps = 17/205 (8%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G +Y L+  + +V  ++ ++ L        ++ L    +++   S+ D L+GL N +A  
Sbjct: 264 GTDYRLLMQVVVVFSAMLLTSLFW------IRRLRRLNDQLRIKSQTDSLTGLANRAALD 317

Query: 120 -------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
                       Y   LSIV  DID+FK+IND+FGH +GD+V+   +  L         V
Sbjct: 318 RRFATALEQARRYRRPLSIVMLDIDHFKRINDDFGHQMGDRVLRDFAALLDDCLRGSDAV 377

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232
           GR GGEEF      +S  +A   A  L +                 T+SAG+AE    + 
Sbjct: 378 GRWGGEEFLVLCPETSGPQAVQFAERLCEQARAFPFATGVSQ----TLSAGVAELSPSDT 433

Query: 233 ISTIIYRADQALYVAKKSGRNRVVC 257
             +++ RAD ALY AK  GR+RV  
Sbjct: 434 PDSLLRRADAALYRAKHEGRDRVCW 458


>gi|308048095|ref|YP_003911661.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Ferrimonas balearica DSM 9799]
 gi|307630285|gb|ADN74587.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Ferrimonas balearica DSM 9799]
          Length = 1465

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 11/188 (5%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
            S + E   +   + +L+  D L+GL N S F + L +           ++++F D+D FK
Sbjct: 1016 SDITERKRAELELRRLADFDPLTGLPNRSQFNTRLHAAVQARGPGGRPMALMFLDLDRFK 1075

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
             IND +GH  GD ++   + +L  + G    + R GG+EF        +  E   LA  +
Sbjct: 1076 HINDTYGHSTGDGLLVQAAQRLKGLMGDSELLCRFGGDEFIVLISEFRTRAELERLAQRV 1135

Query: 200  RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
               I   +     G   +++ S GIA      +   T+I  AD A+Y AK+ GR R   +
Sbjct: 1136 LSAIA--EPFELDGQLFYVSTSVGIACFPDDAQQPETLIRHADLAMYHAKEEGRGRYSFY 1193

Query: 259  SDIENNTC 266
            +   +   
Sbjct: 1194 TPQRDAQA 1201


>gi|296534519|ref|ZP_06896939.1| diguanylate cyclase [Roseomonas cervicalis ATCC 49957]
 gi|296265156|gb|EFH11361.1| diguanylate cyclase [Roseomonas cervicalis ATCC 49957]
          Length = 370

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 20/188 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
            L  +  R+ +++  D L+GL N   F  +L           + LS++  D D FK+ ND
Sbjct: 175 RLLEALERMEEMATTDALTGLANRRRFEEALAVEWRRCAREGQPLSLLVLDADRFKRFND 234

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GHP GD+ +  ++D L  V   P     R GGEEFA     +    AA+LA  +R  +
Sbjct: 235 RYGHPAGDECLRLVADALASVARRPGDVAARHGGEEFALLMPKTDAAGAALLAERVRAAV 294

Query: 204 ENS-QINISSGPSIHITISAGIA-ERCHKEP----------ISTIIYRADQALYVAKKSG 251
            ++ + ++ + PS  +T+S G+A  R   E              ++  AD+ALY AK  G
Sbjct: 295 ADARRPHLGNTPSGIVTVSIGVATTRPMPETGPAGPGILSGADALLSAADRALYAAKMGG 354

Query: 252 RNRVVCFS 259
           RNR+   S
Sbjct: 355 RNRIRVAS 362


>gi|78221296|ref|YP_383043.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter metallireducens GS-15]
 gi|78192551|gb|ABB30318.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter metallireducens GS-15]
          Length = 314

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 62/176 (35%), Positives = 86/176 (48%), Gaps = 10/176 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           +  EL  S   +  LS  D L+ L N    +  +             LS+V  DIDYFK+
Sbjct: 127 LQDELKRSNEMLRTLSITDPLTHLHNRRHLMEMVDKEFQRSSRKGAPLSLVILDIDYFKK 186

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH  GD+V+  L+D +     +     R GGEEF      +  QEA  +A  LR 
Sbjct: 187 INDTYGHQEGDRVLTILADIVRRRLRSYDLAARYGGEEFVLLLPETPVQEALSIAERLRL 246

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255
            ++      S G  + ITIS G+A       E I ++  +AD+ALY AK+ GRNRV
Sbjct: 247 EVQEHVFEGSLG-GLVITISLGVATYPSSRVESIDSLFRQADEALYRAKQGGRNRV 301


>gi|257062143|ref|YP_003140031.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Cyanothece sp. PCC 8802]
 gi|256592309|gb|ACV03196.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Cyanothece sp. PCC 8802]
          Length = 1514

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 11/187 (5%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
             + E   S  R++ ++  D L+ L N     + L            KL++VF D+D FK 
Sbjct: 1068 DVTERKTSQERLNYMAHHDHLTDLPNRLLLKARLDQSIQQATRKRTKLAVVFIDLDRFKH 1127

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
            IND+ GH  GD ++  L+ +L  V  +   V R+ G+EF A        Q A+++   L 
Sbjct: 1128 INDSMGHAAGDALLQQLAQRLRQVLRSSDTVARISGDEFVAVLEDIEDIQHASMVVAKLM 1187

Query: 201  KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
             + E  +     G  IH+T S G++         + ++  AD A+Y AK+ GRN    ++
Sbjct: 1188 TVFE--EPFPLEGQIIHMTSSMGLSLFPDDGMDTAILLRNADSAMYRAKEEGRNTYCFYA 1245

Query: 260  DIENNTC 266
            +   +  
Sbjct: 1246 EEMTSAA 1252


>gi|158425163|ref|YP_001526455.1| GGDEF precursor [Azorhizobium caulinodans ORS 571]
 gi|158332052|dbj|BAF89537.1| GGDEF precursor [Azorhizobium caulinodans ORS 571]
          Length = 519

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 93/198 (46%), Gaps = 10/198 (5%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----- 128
           ++++  + L  +    L     +  ++++L+R D L+G+ N   F   LG    +     
Sbjct: 311 LAVSAIMALTVLFRRELLRRAEAEAQLNELARADGLTGIANRRRFDERLGQEWRRSYRSS 370

Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAAL 185
             ++++  D+D+FK  ND  GH  GD ++  ++  L   V      + R GGEEFAA   
Sbjct: 371 GTMALLMIDVDHFKAFNDTHGHWTGDDLLIRIAATLSQTVHRPGDLIARYGGEEFAAILP 430

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQA 243
            +  + A  +A  +   +   +   S+G  + +T+S G         + ++ I+  AD A
Sbjct: 431 DTDREGALRIAERILDAVRALRFEDSAGQVLPVTVSIGACALSPSPGQQVADIVRLADAA 490

Query: 244 LYVAKKSGRNRVVCFSDI 261
           LY AK  GRN ++   D+
Sbjct: 491 LYEAKDRGRNCIIMAPDM 508


>gi|163784749|ref|ZP_02179554.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879983|gb|EDP73682.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 393

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 96/207 (46%), Gaps = 27/207 (13%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           P Y  +  L+E LS+               GS   +     +R+ QL+  D L+G+ N  
Sbjct: 205 PVYDDDGNLIEILSI---------------GSDYTQQKKLKDRLKQLAETDELTGIYNRR 249

Query: 117 AFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            F+  L         YN  +S++  DID FK+IND +GH +GD V+   S  +       
Sbjct: 250 KFMELLKKETEKSKRYNNNISLLLIDIDDFKKINDTYGHEIGDFVLTLFSKLVSKNIRET 309

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               R GGEEF      +  + A IL   +  ++ N + +        IT+S GIA    
Sbjct: 310 DIFARWGGEEFVILTF-TDLRNAKILGEKICNVVSNFKFDDLD----KITVSIGIASYKK 364

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV 256
            E I++ I RAD+ +Y AK+SG+N+V 
Sbjct: 365 DEDINSFISRADKLMYKAKQSGKNKVA 391


>gi|24371939|ref|NP_715981.1| sensory box protein [Shewanella oneidensis MR-1]
 gi|24345777|gb|AAN53426.1|AE015481_9 sensory box protein [Shewanella oneidensis MR-1]
          Length = 1515

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 91/188 (48%), Gaps = 11/188 (5%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            + + E   +   +  L+  D L+GL N + F   L          N  ++++F D+D FK
Sbjct: 1066 TDITERKKAEEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDRFK 1125

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDL 199
             IND+ GH +GD ++  ++ +L         V RLGG+EF     G ++ +AA +++  +
Sbjct: 1126 HINDSMGHHIGDLLLKAVAHRLQSAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKV 1185

Query: 200  RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
             K  +     +    S++I+ S GI+   +    + ++I  AD A+Y AK  GRN    +
Sbjct: 1186 LKAFQA--PFLLDDKSLNISTSIGISLYPNDAKDVDSLIKFADTAMYHAKALGRNNFQFY 1243

Query: 259  SDIENNTC 266
            ++  N   
Sbjct: 1244 TNKLNEMA 1251


>gi|20807551|ref|NP_622722.1| diguanylate cyclase/phosphodiesterase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516086|gb|AAM24326.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL)
           [Thermoanaerobacter tengcongensis MB4]
          Length = 793

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 106/237 (44%), Gaps = 20/237 (8%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG-------YISGS--ILKEL 93
           I I N+       TPFY  EY +       I  ++    L         I+GS   + E 
Sbjct: 263 IVINNLRNHLEKKTPFYLCEYRIKTKDGRYIWVLSRGKALWDEEGRAIRIAGSHTDITER 322

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNF 146
               +++  ++  D L+GL     F+  L           +KL++ F D+D FK IND+ 
Sbjct: 323 KQMESKLKYMAFYDPLTGLPRREVFMDRLKIAMADAKRNGKKLAVFFVDLDNFKTINDSL 382

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN 205
           GH +GD+++  ++ +L         V R+GG+EF        +  +   +AN + ++  N
Sbjct: 383 GHHIGDRLLKKVARKLKACLRESDTVSRVGGDEFVILLPDIINIDDTNKVANRILELF-N 441

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             I   +   +++TIS GIA    H +    I+  AD A+Y AK+ G+N    F  I
Sbjct: 442 QPIKF-NNYELYVTISIGIAIYPDHGKNERAIVKNADIAMYKAKRDGKNSFQYFDSI 497


>gi|313108017|ref|ZP_07794184.1| hypothetical protein PA39016_001210023 [Pseudomonas aeruginosa
           39016]
 gi|310880686|gb|EFQ39280.1| hypothetical protein PA39016_001210023 [Pseudomonas aeruginosa
           39016]
          Length = 523

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 8/174 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            +         +  L+  D L+GL N  +F+            +      +  DID+FK 
Sbjct: 344 DISRRKAMEQELRLLASTDTLTGLHNRHSFLHQAELMLKAAERFRHPCVALMLDIDHFKN 403

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD+ +  +++ L         +GRLGGEEFAA     S  +A  +A  LR 
Sbjct: 404 INDSHGHLTGDRALQRVAETLRQGLREVDLLGRLGGEEFAALLPEVSLDQALDVAERLRA 463

Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
            +E  +++   G  + +T+S G+A R    + + +++ RAD ALY AK  GRNR
Sbjct: 464 GVEALRVSNPDGEPLRMTVSIGVALRRDAGDDLESLLVRADSALYQAKSGGRNR 517


>gi|297537222|ref|YP_003672991.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297256569|gb|ADI28414.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylotenera sp. 301]
          Length = 1026

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 10/186 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFK 140
             + +   S ++I +L+  D L+ L N              +   N KL+++F D+D+FK
Sbjct: 583 RDITDRKESESQIQKLAHFDALTSLPNRILLQDHFKYALSLIKRNNGKLAVIFLDLDHFK 642

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH +GD ++  ++ +L +       + RLGG+EF     G+  + AA +A  L 
Sbjct: 643 DINDTLGHSIGDLLLIEVAKRLQLTLREEDTLSRLGGDEFILILPGTDSRGAANVAQKLL 702

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I+   +        + +T S G+A           +  +AD A+Y AK+ GRN    F+
Sbjct: 703 SIMA--KPYHIDSFELTVTGSVGVALYPNDGTDFEILSQKADTAMYRAKQEGRNNYRFFT 760

Query: 260 DIENNT 265
                T
Sbjct: 761 AEMQAT 766


>gi|192360831|ref|YP_001982921.1| EAL domain-containing protein [Cellvibrio japonicus Ueda107]
 gi|190686996|gb|ACE84674.1| EAL domain protein [Cellvibrio japonicus Ueda107]
          Length = 798

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 62/184 (33%), Positives = 89/184 (48%), Gaps = 11/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E   S  +I  L+  D L+GL N       L           EKL I+F D+D FK 
Sbjct: 344 DITEHKNSRAQIEFLAHHDALTGLPNRILLNDRLEMAITQVRRQGEKLGILFIDLDRFKN 403

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND+ GH VGD+++   + +L     T   V RLGG+EF         +    LA+   K
Sbjct: 404 VNDSLGHGVGDQILQEAAKRLTANVRTGDTVSRLGGDEFVVLFPRVRTEG--NLADLTIK 461

Query: 202 IIENSQINIS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + E  Q+  +  G S+HIT S GIA      E  +T+I  AD A+Y+AK+ GRN    ++
Sbjct: 462 LREQLQLPYTVDGISLHITPSIGIAVYPDDGEDPNTLIKNADAAMYLAKEKGRNNYQFYT 521

Query: 260 DIEN 263
              N
Sbjct: 522 PTLN 525


>gi|313682667|ref|YP_004060405.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313155527|gb|ADR34205.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 582

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 10/175 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN------EKLSIVFFDIDY 138
           I      EL  +Y ++ +++  D L+ + N   F S+L +        E+ S++ FDID+
Sbjct: 406 IVKERTAELNEAYEKMEKIALTDTLTEIYNRYYFNSALQNEISRAKRYERFSLLMFDIDH 465

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND +GH VGD V+  +++++           R+GGEEF      ++ + A  +   
Sbjct: 466 FKVVNDTYGHNVGDIVLRMIAERVKSCLRESDIFARVGGEEFMIILPRTTLEMAKEVGER 525

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +R  IE    +        ITIS G+      E  + I+ R D ALY AK +GRN
Sbjct: 526 IRTTIEMHTFDGIG----KITISLGLVTYRDDESFAEIVKRVDTALYKAKNNGRN 576


>gi|213966757|ref|ZP_03394908.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
            tomato T1]
 gi|213928607|gb|EEB62151.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
            tomato T1]
          Length = 1278

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 15/192 (7%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            S + E   S +RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 827  SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQQAERQQAWVVLMFLDLDRFK 886

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAA----IL 195
             IND+ GH  GD+++  ++ +L+        V R+GG+EF        + + A      +
Sbjct: 887  PINDSLGHAAGDRMLQEMATRLLACVSADDTVARMGGDEFTLLLQPDITREAALTRAIHV 946

Query: 196  ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
            A  +   +      +  G    +T S GIA        +S ++  AD A+Y AK+ G+N 
Sbjct: 947  AERILTSL--VTPFVLEGREFFVTASIGIALSPQDGSELSKLMKNADTAMYHAKERGKNN 1004

Query: 255  VVCFSDIENNTC 266
               +    N T 
Sbjct: 1005 FQFYQTDMNATA 1016


>gi|171316975|ref|ZP_02906182.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
 gi|171097899|gb|EDT42719.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
          Length = 492

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 10/215 (4%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           +    +  V   +LV       + L ++    L+    + + +  L+R D L+GL N  +
Sbjct: 278 YAAWRHRAVTIGALVATFGAAFIALSFMLSGQLRRRMRAESELVLLARTDGLTGLNNRRS 337

Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
           F   L     +        S++F D+D FK  ND +GH  GD  +A ++  +      P 
Sbjct: 338 FGEVLDREWRRARRTHSVFSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPV 397

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               R GGEEF      +    AA +A  +R  I+   +  +      +T S G+A    
Sbjct: 398 DTAARYGGEEFVVLLPDTPPAGAAQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTP 457

Query: 230 KEPIS--TIIYRADQALYVAKKSGRNRVVCFSDIE 262
           ++      +I  AD+ALY AK  GRNRV     ++
Sbjct: 458 EQDNEPGAVIKAADEALYYAKTIGRNRVAALQPLD 492


>gi|33597703|ref|NP_885346.1| hypothetical protein BPP3175 [Bordetella parapertussis 12822]
 gi|33574131|emb|CAE38460.1| putative conserved membrane protein [Bordetella parapertussis]
          Length = 540

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 86/175 (49%), Gaps = 8/175 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQIND 144
           ++ +++   + ++ Q S  D L+GLLN       L +    +  ++++  DID FK IND
Sbjct: 345 AVRRKIGTKFEQLRQDSLTDPLTGLLNRRGLEEYLRNTPWQDGAMTVLALDIDRFKIIND 404

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+VI  L+  L     T   + RLGGEEFA         +A  LA  +R+ IE
Sbjct: 405 THGHAAGDEVIQSLAGILRSSARTKDVLARLGGEEFAVLLPDVDVPQAPQLAERIRRSIE 464

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +         +  T+S G+A    H   +  ++  AD+ALY AK  GRNR   +
Sbjct: 465 AAPTE----AGVSYTVSIGVACYPAHGASLEAVMRCADEALYAAKAGGRNRTHLY 515


>gi|264680486|ref|YP_003280396.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262211002|gb|ACY35100.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 519

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 8/169 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHP 149
           L  +  ++ +    D L+GL N     +++ ++       S++  DID+FK IND FGH 
Sbjct: 345 LQRNITKLREDVNTDPLTGLGNRRHLEAAISAFQTQALPFSVIAIDIDHFKHINDGFGHD 404

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+  L+  +  V        R+GGEEF     G+  + AA  A  LR+++E  +I 
Sbjct: 405 TGDEVLRQLARTMREVSRVDDLPCRVGGEEFLLLLPGTGLEAAAHAAERLRQLVEKMEIP 464

Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
               P  HITIS G+A     +  I  +  +AD  LY AK+ GRNRV+ 
Sbjct: 465 ----PVGHITISLGVAHWPDSDPDIKAVFQQADAMLYAAKRGGRNRVMV 509


>gi|220935449|ref|YP_002514348.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219996759|gb|ACL73361.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 450

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 91/182 (50%), Gaps = 11/182 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
              + E      +I  L+  D L+GL N + F   L +        + KL+++F D+D F
Sbjct: 267 AREITERKQQEAQIHHLAHHDLLTGLPNRAMFFDRLEAAIDEASAESRKLALMFVDLDRF 326

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K +ND  GH VGD+++  ++ ++  +      VGR+GG+EF        +E +A   A  
Sbjct: 327 KPVNDRHGHAVGDQLLQAVAGRMHTILRAGDLVGRIGGDEFIVLLHDIRTEDDALTAAEK 386

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           LR  +E +  +I  G  + I+ S GIA    H +    +  RAD+A+Y++K  GRN    
Sbjct: 387 LRCHLE-TPFDI-EGRRLQISASIGIALYPSHADNARELARRADEAMYLSKAEGRNLTTL 444

Query: 258 FS 259
           +S
Sbjct: 445 YS 446


>gi|119944058|ref|YP_941738.1| diguanylate cyclase with PAS/PAC sensor [Psychromonas ingrahamii 37]
 gi|119862662|gb|ABM02139.1| diguanylate cyclase with PAS/PAC sensor [Psychromonas ingrahamii 37]
          Length = 1078

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 66/201 (32%), Positives = 89/201 (44%), Gaps = 13/201 (6%)

Query: 64   ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----- 118
             L +  S  II    ++++G+     + E       I  L+  D L+G+ N  AF     
Sbjct: 883  FLADISSAAIILDGRTIMVGFFH--DVTERKKVEEEIKLLATTDSLTGIANRRAFSTHLA 940

Query: 119  --ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
              +     Y   LS+V FDIDYFK++NDNFGH  GD V+  LS+ +         V R G
Sbjct: 941  SELERSNRYGTPLSLVMFDIDYFKKVNDNFGHDAGDDVLQALSELVKRNIRAVDIVARWG 1000

Query: 177  GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236
            GEEF      S    A      LR+ I +       G    +T+S GI      E     
Sbjct: 1001 GEEFMLLMPESDISAATAAIEKLRREISDFPF----GQVGSLTVSFGITVFVLNEDSKVF 1056

Query: 237  IYRADQALYVAKKSGRNRVVC 257
            + R D ALY AK+ GRNRV  
Sbjct: 1057 LKRVDDALYQAKEKGRNRVEI 1077


>gi|152988979|ref|YP_001348933.1| hypothetical protein PSPA7_3579 [Pseudomonas aeruginosa PA7]
 gi|150964137|gb|ABR86162.1| membrane protein, putative [Pseudomonas aeruginosa PA7]
          Length = 685

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 99/224 (44%), Gaps = 13/224 (5%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLS 110
           G+   +    ++V  L+++ I++ +S+L   +      +   L  +   + QL+  D L+
Sbjct: 210 GIDNGWLAVLVIVITLAVIAIALIVSVLDSRLEARTSVLANSLARANRELIQLALHDNLT 269

Query: 111 GLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            L N       L          + + +++F D+D FK +ND +GH +GD ++  +++++ 
Sbjct: 270 KLPNRMLLDDRLEQAIQQAIRDDRRFAVLFMDLDGFKAVNDAYGHHLGDLLLIEVAERIR 329

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   + RLGG+EF          +AA LA  L K I  SQ    S   + ++ S G
Sbjct: 330 GNVRAQDTIARLGGDEFVLLIEAREPADAATLAEKLVKQI--SQPYQISRHEVRVSASIG 387

Query: 224 IAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           IA      +    ++  AD A+Y AK  GRN    F    N   
Sbjct: 388 IALFPGDGQTRHELMINADAAMYHAKDQGRNGYCFFESSMNANA 431


>gi|330957430|gb|EGH57690.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 219

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 61/167 (36%), Positives = 87/167 (52%), Gaps = 11/167 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
              ++ + +  D L+GL N  A   +L              S++  DID+FKQ+ND +GH
Sbjct: 53  REQQLLEFAHSDPLTGLDNRRAAEHTLERLINTTRVSGRPFSLIICDIDHFKQVNDLYGH 112

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           P GD V+  ++D L           R GGEEF      SS  +AA LA  LRK + + ++
Sbjct: 113 PAGDSVLKSVADILKHQVRMFDVAARWGGEEFLVLVADSSLNQAAELAERLRKGVASLEL 172

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                 +  ITIS G+AE    E  +++I RAD+ALY AK+ GRNRV
Sbjct: 173 T----ETGSITISLGVAELESGETAASLIQRADKALYQAKRLGRNRV 215


>gi|299532954|ref|ZP_07046341.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298719178|gb|EFI60148.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 519

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 8/169 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHP 149
           L  +  ++ +    D L+GL N     +++ ++       S++  DID+FK IND FGH 
Sbjct: 345 LQRNITKLREDVNTDPLTGLGNRRHLEAAISAFQTQALPFSVIAIDIDHFKHINDGFGHD 404

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+  L+  +  V        R+GGEEF     G+  + AA  A  LR+++E  +I 
Sbjct: 405 TGDEVLRQLARTMREVSRVDDLPCRVGGEEFLLLLPGTGLEAAAHAAERLRQLVEKMEIP 464

Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
               P  HITIS G+A     +  I  +  +AD  LY AK+ GRNRV+ 
Sbjct: 465 ----PVGHITISLGVAHWPDSDPDIKAVFQQADAMLYAAKRGGRNRVMV 509


>gi|124268236|ref|YP_001022240.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylibium petroleiphilum PM1]
 gi|124261011|gb|ABM96005.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylibium petroleiphilum PM1]
          Length = 778

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 94/189 (49%), Gaps = 11/189 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNE----KLSIVFF 134
           L  +    ++E   +  RI  L+  D L+GL N +AF   +  L + +     +++++F 
Sbjct: 332 LRLVIVRDIRERVAAQARIHHLAHHDALTGLPNRAAFGLQLERLTASHRSGDAQIALLFI 391

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAA 193
           D+D+FK+IND+ GH VGD ++  ++ ++         V R GG+EF     G +      
Sbjct: 392 DLDHFKRINDSLGHLVGDLLLQTVTARITDNLRADDLVARFGGDEFMVLIPGVTDRSVVE 451

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
            +A  L  +IE      ++G SI ++ S G++    H    + +I  AD A+Y+AK  GR
Sbjct: 452 QVAGKLLAVIEA--PLEAAGRSISVSPSIGVSLFPEHGRTPAELIQHADAAMYMAKARGR 509

Query: 253 NRVVCFSDI 261
             V  F  +
Sbjct: 510 ANVQFFDPV 518


>gi|209883884|ref|YP_002287741.1| ggdef domain [Oligotropha carboxidovorans OM5]
 gi|209872080|gb|ACI91876.1| ggdef domain [Oligotropha carboxidovorans OM5]
          Length = 763

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 83/188 (44%), Gaps = 8/188 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN----EKLSIVFFDIDYFK 140
           +    + E   +  RI  L+R D L+GL N +              +  +++F D+D FK
Sbjct: 318 VLSEDITERQQTAERIEHLARYDALTGLPNRTHLEDEFERLTAQGMQSCALLFIDLDQFK 377

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILANDL 199
           ++ND  GHP GD ++  ++++L  +  T   V R GG+EF        S  EAA LA  +
Sbjct: 378 KVNDTLGHPAGDALLCQVANRLRRILNTTGIVARFGGDEFVVLLPIQHSRDEAAQLAGHI 437

Query: 200 RKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + +  S+I   +G  I +  S G+            I+  AD A+Y AK  GR     F
Sbjct: 438 IRTL--SEIYDVNGHQIMVGASVGVGVMPEDGRTFEQILKCADMAMYHAKADGRGTYSFF 495

Query: 259 SDIENNTC 266
               +   
Sbjct: 496 EHTMDEKA 503


>gi|89902788|ref|YP_525259.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
 gi|89347525|gb|ABD71728.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
          Length = 498

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 10/180 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L+E+     ++ + +  D L+ L N     ++L           + LS++  D+D FK+ 
Sbjct: 173 LQEIEALQQQLREQASRDSLTALYNRRYLDTTLDRELASCKREGKPLSLIMIDVDDFKKY 232

Query: 143 NDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND  GH  GD+ +  ++  L            R GGEEF     G     A  LA +LR+
Sbjct: 233 NDLHGHQAGDQCLIAVAKTLQASAKRASDLAARYGGEEFLLVLPGMDATAAQGLAEELRR 292

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFS 259
            +E  +I         +TIS G+A   +     ++ ++  AD+ALY AK  GRN+V   +
Sbjct: 293 SVEALKIPHEQSRGGSVTISIGLAVMTNDSHKDVAGLLRAADEALYHAKHGGRNQVRLAT 352


>gi|83648653|ref|YP_437088.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83636696|gb|ABC32663.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 1263

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + E      ++   +  D L+GL N +     LG           K++IVF DID FK 
Sbjct: 670 DVTESRHYQEQLEYQATHDDLTGLPNRNMMRDRLGQELWRAARNKHKVAIVFLDIDQFKL 729

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD ++  ++ +L  +      V R GG+EF       S  E   +A+ + +
Sbjct: 730 INDSLGHNAGDAMLKVIAKRLTGMARASDTVVRYGGDEFVIILPDISPPE--KVASFISR 787

Query: 202 IIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++E    +I      IH++ S G++      +    +I  AD A+Y+AK+ GRNR   F+
Sbjct: 788 LMEVIAQSIQLDHRDIHVSASIGVSIYPQDGDHPEVLIKNADIAMYLAKEEGRNRFHFFT 847

Query: 260 DIENNTC 266
           +  N T 
Sbjct: 848 EDLNKTA 854


>gi|95929750|ref|ZP_01312491.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
 gi|95134046|gb|EAT15704.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
          Length = 388

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 82/186 (44%), Gaps = 13/186 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
           +IS   + E   +  +I QL+  D L+GL N   F+  +          N+ L+++F D+
Sbjct: 202 FISIEDITEFHRAQKKIEQLAYYDALTGLPNRRLFMDRINQTVKRAERDNDHLALLFIDL 261

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAIL 195
           D FK +ND FGH  GD  +  ++ +L         V RL G+EF        +  +  ++
Sbjct: 262 DKFKSVNDRFGHSGGDDYLCEVATRLESAVRKSDTVARLSGDEFVVLLSTVHNGNDGELM 321

Query: 196 ANDLRKIIENSQINIS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           A  L    E  Q  +   G  + I  S GIA           ++  AD A+Y AK  G+N
Sbjct: 322 AKKL---FEQLQPTVEIDGHDVSINASIGIACYPQDATTAEGLLQCADTAMYRAKHQGKN 378

Query: 254 RVVCFS 259
               F+
Sbjct: 379 NFCSFT 384


>gi|319761584|ref|YP_004125521.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|330823452|ref|YP_004386755.1| PAS/PAC sensor-containing diguanylate cyclase [Alicycliphilus
           denitrificans K601]
 gi|317116145|gb|ADU98633.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|329308824|gb|AEB83239.1| diguanylate cyclase with PAS/PAC sensor [Alicycliphilus
           denitrificans K601]
          Length = 431

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 9/180 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
            + + EL      + + +  D L+GL N  +F    G        +   LS++  DID+F
Sbjct: 250 STDITELHELKEELRRQASTDGLTGLANRRSFCERAGHEFARSRRHGTPLSLIAIDIDHF 309

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+ ND++GHP+GD+V+   +     +        R GGEEF      +   +A  +A  +
Sbjct: 310 KRFNDSYGHPLGDRVLCAFAACCQSMLREADLCARTGGEEFCILLPDTGLDDARRIAERI 369

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           R    +  ++    P + I+ S G+A     +    T+  RAD+ALY AK+ GR+ +  +
Sbjct: 370 RVSAGSLCVD-GQSPQLRISASFGVASLESGDQAFDTLFSRADRALYCAKQQGRDCIFAW 428


>gi|293394471|ref|ZP_06638767.1| ornithine decarboxylase [Serratia odorifera DSM 4582]
 gi|291422936|gb|EFE96169.1| ornithine decarboxylase [Serratia odorifera DSM 4582]
          Length = 403

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 74/258 (28%), Positives = 119/258 (46%), Gaps = 26/258 (10%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN-LSLV-IISITISLL 81
           P T  + FS     +++ ++     FLF + +      E I++    SLV + S  + L+
Sbjct: 149 PLTVALMFSSLIPFYLSPMLL----FLFSVPILSMVIGENIVIRGAFSLVNLASYALILI 204

Query: 82  LGYISGSIL-----------KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---- 126
           L Y +  +L           +E      R+S+L+  D L+GL N   F +   S      
Sbjct: 205 LIYSAKRMLEKWFMLAMERERENQRLIERLSKLAHRDPLTGLSNRRYFNAYFDSVFARES 264

Query: 127 ---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ-LVVVFGTPMFVGRLGGEEFAA 182
              E  S++  D+DYFK+ ND++GH  GD+ +  L++  L  V  +   V R GGEEF  
Sbjct: 265 SGVEHFSVILIDVDYFKKYNDHYGHQAGDECLVRLAECFLRCVRRSQDLVARYGGEEFII 324

Query: 183 AALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEPISTIIYRAD 241
               S  +EA  +A  ++  +   QI  + SG S  +++S GIA+         +I  AD
Sbjct: 325 LLPKSDRREAMAVAERIKTQVAALQIPHAQSGVSPWVSVSQGIAQWRPGVDKERLIASAD 384

Query: 242 QALYVAKKSGRNRVVCFS 259
           +ALY AK  GR+      
Sbjct: 385 RALYQAKSQGRSSYQVAD 402


>gi|152999827|ref|YP_001365508.1| PAS/PAC and GAF sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|151364445|gb|ABS07445.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS185]
          Length = 921

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 11/207 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFI--- 119
           I  +N+++  I   +  +  +++  + +     +  +++ L+  D L+ L N   F+   
Sbjct: 456 IFPQNITISTIYDEVGDVRYFVAVFADISAQKENEAQLTHLAYFDPLTHLPNRMKFMMQL 515

Query: 120 ----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     N +L+ V  D+D FK IND+FGH +GD+++  L+ +L    G    + R+
Sbjct: 516 KQEVRQAKRLNLQLATVMIDVDLFKHINDSFGHSIGDEMLVELAKRLRSQVGDQDVLSRI 575

Query: 176 GGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF A   G    E A +A N LR++ E     +S+G  + +T S G++         
Sbjct: 576 GGDEFVALISGIDNNEDATVAINQLRQVFEQ-PFIVSTGDHLRLTASMGVSLYPNDGTDA 634

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSD 260
            T++  AD A+Y AK  GRN    +++
Sbjct: 635 DTLLRNADAAMYRAKNDGRNNYAFYTE 661


>gi|89092715|ref|ZP_01165668.1| GGDEF/HAMP domain protein [Oceanospirillum sp. MED92]
 gi|89083227|gb|EAR62446.1| GGDEF/HAMP domain protein [Oceanospirillum sp. MED92]
          Length = 580

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 64/175 (36%), Positives = 93/175 (53%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
              +   + +L+  D L+ +LN  AF       I     YN +L+I+  DID+FKQIND 
Sbjct: 402 RKKAEEELIKLASTDPLTRVLNRRAFDQRSREEIERSHRYNRELAIILLDIDHFKQINDQ 461

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GDKV+  +++ +         + R GGEEF      + E  A ++A  +RK I  
Sbjct: 462 YGHQFGDKVLIDVANLIGPSLRAADCLCRHGGEEFIILLPETDEATALLIAERVRKSIAQ 521

Query: 206 SQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            +I      S+ IT S G+A    +E  I   +YRADQA+Y AK SGRN+VV F+
Sbjct: 522 HKIT-DRHDSLSITASFGVAVWRREEGDIQPAVYRADQAMYKAKNSGRNKVVAFT 575


>gi|186684306|ref|YP_001867502.1| diguanylate cyclase/phosphodiesterase with FHA and GAF sensor
           [Nostoc punctiforme PCC 73102]
 gi|186466758|gb|ACC82559.1| diguanylate cyclase/phosphodiesterase with FHA and GAF sensor
           [Nostoc punctiforme PCC 73102]
          Length = 878

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 13/186 (6%)

Query: 85  ISGSIL--KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFD 135
           ++ SI+  ++      +I   +  D L+GL N   F   L          +E L+++F D
Sbjct: 428 MAASIIGARQRQQVEEKIRYQALHDMLTGLPNRLLFNELLSKTLPNATRNSESLAVIFLD 487

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAI 194
           +D FK IND  GH +GD+++  ++ +L  +      + R GG+EF       +  +E   
Sbjct: 488 LDRFKVINDTLGHTLGDQLLKNVAQRLQDLLRGGDTIARWGGDEFTILLPRVTDIEEVTQ 547

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253
           +A  + + +E+       G  +++T S GIA   +      T+I  AD ALY AK  GRN
Sbjct: 548 VAYRILQTLED--PFYLQGHELYVTASLGIALLDNNSPDAETLIQHADAALYYAKDKGRN 605

Query: 254 RVVCFS 259
               +S
Sbjct: 606 NYQFYS 611


>gi|309780654|ref|ZP_07675396.1| developmental regulator MorA [Ralstonia sp. 5_7_47FAA]
 gi|308920577|gb|EFP66232.1| developmental regulator MorA [Ralstonia sp. 5_7_47FAA]
          Length = 772

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 14/178 (7%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGS----------YNEKLSIVFFDIDYFKQIN 143
             +  +++ L++ D L+GL N + F   + +             +++++F D+D FK++N
Sbjct: 330 RAAQQQLTFLAQRDALTGLYNRAYFSQRMQAVMEQAASQANEARQVAVLFLDLDGFKKVN 389

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKI 202
           D  GH  GD ++  ++ +L         + RLGG+EF        S  EA  LA  +   
Sbjct: 390 DTAGHEAGDHLLRIVAQRLSACVRQSDTLARLGGDEFVVLLDNVRSLGEAERLAKRIVHS 449

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I   Q   +SG   ++  S GIA    H    +T++  AD A+Y AK++GRN+   ++
Sbjct: 450 IA--QPFSTSGTEYYLGASIGIALYPEHGNDAATLLRCADAAMYNAKQNGRNQHRVYT 505


>gi|288573949|ref|ZP_06392306.1| diguanylate cyclase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569690|gb|EFC91247.1| diguanylate cyclase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 494

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 58/167 (34%), Positives = 84/167 (50%), Gaps = 11/167 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +R+  L+  D L+GL N                 Y   LS+V  DID+FK +NDNFGH V
Sbjct: 331 DRLEYLANRDSLTGLWNRRKMDQILLSETERSSRYGSSLSVVMVDIDHFKNVNDNFGHEV 390

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V++ ++  +         VGR GGEEF      +  + A   A  +R  +E++  + 
Sbjct: 391 GDTVLSSIAALMKNCTRAGDSVGRWGGEEFLVVLPETDVKGALEYAERMRSAVEDNVFH- 449

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                I IT S G+ +    EP++  + RAD+ALY AK+ GRNRV  
Sbjct: 450 ---DDIRITSSFGVTQYRSGEPVNEFVARADEALYDAKEKGRNRVEI 493


>gi|213851901|ref|ZP_03381433.1| hypothetical protein SentesT_02792 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 269

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 73/266 (27%), Positives = 129/266 (48%), Gaps = 28/266 (10%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY------GLEYILVE----- 67
           + S+  + F++++ + F+  ++ ++ +  +   Y  L           L  +L       
Sbjct: 3   MWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLWLTALLASVQLNQ 62

Query: 68  --NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDCLSGLLNH 115
             N+  +++ +T++ +L Y   I      E ++ Y        R+  ++  D L+G  N 
Sbjct: 63  YVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANR 122

Query: 116 SAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MF 171
            +  S LG      E  +++  D+DYFK  NDN+GH  GD  +A ++  +     TP   
Sbjct: 123 RSMESFLGDALRQTEPFALIMLDVDYFKNYNDNYGHQAGDACLAKVACVVKRSIRTPADL 182

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKII-ENSQINISSGPSIHITISAGIAERCHK 230
           V R GGEEF      SS  EAA++A  ++  + E +  +++S  S  +T+S GI      
Sbjct: 183 VARYGGEEFVVVLPSSSLNEAALVAKRIQTNLRETALPHVASAVSETVTVSMGITLSTAG 242

Query: 231 EPISTIIYRADQALYVAKKSGRNRVV 256
           + ++ II RAD+ALY AK+ GRNR V
Sbjct: 243 DTVTGIIARADEALYRAKQQGRNRWV 268


>gi|124514573|gb|EAY56085.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptospirillum rubarum]
          Length = 699

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 9/189 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           I    + E      +I+  +  D L+GL N   F   L              ++++ DID
Sbjct: 246 IVFRDVSEKRRLERQIAYQATHDALTGLPNRHLFQDRLVRTIARAHRSGHSFALLYIDID 305

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK +ND  GHP GD+V+  L  +L  V      V RLGG+EFA      S++   ++  
Sbjct: 306 HFKNVNDRLGHPFGDRVLVELGQRLKGVVRETDTVARLGGDEFAVILEEVSDRNEGMVLG 365

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII-YRADQALYVAKKSGRNRVV 256
             R + E S         + +T+S G+A+       +T++   AD AL+  K  GRN + 
Sbjct: 366 R-RLMHEASLPFRIDEARVDLTVSIGVAQYPEDGTDATLLVKNADIALFHVKGDGRNSIQ 424

Query: 257 CFSDIENNT 265
            FS+  N T
Sbjct: 425 FFSEEMNRT 433


>gi|71906110|ref|YP_283697.1| GGDEF [Dechloromonas aromatica RCB]
 gi|71845731|gb|AAZ45227.1| GGDEF protein [Dechloromonas aromatica RCB]
          Length = 412

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 89/176 (50%), Gaps = 8/176 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
           +L +   +   + +L+  D L+GL+N   F+            Y   +++   D+D+FK+
Sbjct: 236 LLIQNEQARQVLEKLANKDGLTGLMNRRFFMQSAEAELQRAQRYRRPVTVAMADLDFFKK 295

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH  GD V+   +D +         V R GGEEFA      S  EA  LA  LR 
Sbjct: 296 LNDTYGHAAGDAVLCAFADLVRDSSRQSDLVCRYGGEEFAFLFPEISPTEAEALAERLRA 355

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              N++I +  G ++ +T+S G+A+     PI   +  AD ALY AK+ GRNRVV 
Sbjct: 356 SCANAEIGLPDGRTVKVTVSMGLADASE-CPIEIALKHADDALYEAKRLGRNRVVL 410


>gi|66043536|ref|YP_233377.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63254243|gb|AAY35339.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 690

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 11/184 (5%)

Query: 82  LGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSI 131
           L     S+ +E            Q + ID L+GL N +A+   L     +       L +
Sbjct: 505 LAARVASMEQEALGFRTHLEEQRQKALIDPLTGLPNRAAWGERLEREMARWHEEKNSLLV 564

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK+IND +GH  GDKV+  +++ L        F+ R GGEEF      +    
Sbjct: 565 CILDLDHFKRINDGYGHLAGDKVLKIVANVLSKRLRADDFMARFGGEEFVMLLPATPPAT 624

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              L ++LR  +E+   +   G  + IT+S G+      E   T I RADQALY AK++G
Sbjct: 625 GLKLLDELRAAVESCPFHFK-GERVTITVSIGMTAFRPSERSDTAIKRADQALYKAKENG 683

Query: 252 RNRV 255
           RNR+
Sbjct: 684 RNRI 687


>gi|77165089|ref|YP_343614.1| multisensor diguanylate cyclase/phophodiesterase [Nitrosococcus
           oceani ATCC 19707]
 gi|254433953|ref|ZP_05047461.1| PAS fold family [Nitrosococcus oceani AFC27]
 gi|76883403|gb|ABA58084.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Nitrosococcus oceani ATCC 19707]
 gi|207090286|gb|EDZ67557.1| PAS fold family [Nitrosococcus oceani AFC27]
          Length = 944

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 89/188 (47%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S +     +  R+  L+  D L+GL N S F+  L         ++ +++++F D+D FK
Sbjct: 498 SDITLRKQTEQRLYYLAHHDALTGLPNRSLFLDRLEHAIHHAQRHHHRIAVLFIDLDRFK 557

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND  GHP+GD ++  +++++ +       + RLGG+EF       +     +++   +
Sbjct: 558 FINDTLGHPIGDILLKQVAERMRLNIRAEDTIARLGGDEFTVIIENFTDTSAISLITQKI 617

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
               E    NI  G  + ++ S G++         S ++ RAD A+Y AKK G++    F
Sbjct: 618 ISACEK-PFNIK-GNELFVSASIGVSLYPEDGHEASMLLQRADAAMYQAKKRGKSCCQFF 675

Query: 259 SDIENNTC 266
           +   N   
Sbjct: 676 TTEINTAA 683


>gi|312880831|ref|ZP_07740631.1| response regulator receiver modulated diguanylate cyclase
           [Aminomonas paucivorans DSM 12260]
 gi|310784122|gb|EFQ24520.1| response regulator receiver modulated diguanylate cyclase
           [Aminomonas paucivorans DSM 12260]
          Length = 998

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 89/185 (48%), Gaps = 11/185 (5%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIV 132
           L +   SG  + EL   + ++   +  D LSGLLN  A +              E +S+ 
Sbjct: 818 LEMRIASGRRVVEL---HEQLLYAATHDPLSGLLNRRALLEQEEAELTRSRRTGEPVSVA 874

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D FK IND +GH  GD+V+   +  +          GR GGEEF     G+S  EA
Sbjct: 875 MMDLDRFKAINDRYGHLAGDEVLREAARLIQCNLREYDLCGRYGGEEFLLVFPGASAFEA 934

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           A +   LR  I ++ +    G S+  T S G+AE      +  +   AD+ALY AK++GR
Sbjct: 935 AQVCERLRFRIADAPLEY-QGQSLAFTASFGVAEYDRIGSLDALNAAADEALYRAKEAGR 993

Query: 253 NRVVC 257
           +RVV 
Sbjct: 994 DRVVW 998


>gi|283851062|ref|ZP_06368346.1| diguanylate cyclase with GAF sensor [Desulfovibrio sp. FW1012B]
 gi|283573458|gb|EFC21434.1| diguanylate cyclase with GAF sensor [Desulfovibrio sp. FW1012B]
          Length = 499

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 52/162 (32%), Positives = 82/162 (50%), Gaps = 10/162 (6%)

Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  D L+ + N  AF   L         Y+  +S++  DID+FK IND +GH VGD V+ 
Sbjct: 319 ADHDGLTRIHNRRAFDERLVEELRRHQRYHHPMSLLMLDIDHFKGINDTYGHLVGDHVLR 378

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +   +     +  F  R GGEEF      ++E+++ +LA  LR +I +++  +  G   
Sbjct: 379 EVGRLMTETLRSTDFTARYGGEEFVIILPQTAEEQSRVLAERLRGLIADARF-VHDGHPF 437

Query: 217 HITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVV 256
            IT+S G A            ++ +AD+ALY AK  GRN+V 
Sbjct: 438 SITVSIGAATLLPGALSKRKDLLDKADKALYQAKTLGRNQVC 479


>gi|291287747|ref|YP_003504563.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809]
 gi|290884907|gb|ADD68607.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809]
          Length = 434

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 11/184 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDI 136
            IS + +  L         LS+ D L+ + N + F          +  Y + +SI+  D+
Sbjct: 248 LISFADVTLLEKEKQIYRMLSQQDPLTKIYNRTKFFEEVEKELDRVSRYGQDMSILMIDV 307

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK++ND +GH VGDKV+  L+  +           R GGEEFA     ++++ A   A
Sbjct: 308 DYFKEVNDQYGHLVGDKVLIELTQIIRQNIRKSDVFARYGGEEFALLMPMTAQKGAREKA 367

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +R+ +     +        +T S G+A     + + + + +AD ALY AK+SGRN V 
Sbjct: 368 DLIREAVSTHNFDKCG----RVTCSFGVATYAEGDTVDSFVQKADIALYNAKESGRNMVQ 423

Query: 257 CFSD 260
            F +
Sbjct: 424 VFEE 427


>gi|254410317|ref|ZP_05024096.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196182523|gb|EDX77508.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 331

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           +L      + +L  +D L+ + N  AF          L      LS++  DID+FK  ND
Sbjct: 150 KLEEMNQELQRLVDLDGLTQIANRRAFDQALQQEWKRLAREQAPLSLILCDIDFFKAYND 209

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD+ +  ++D L          V R GGEEF      +S + A  +A  +R  +
Sbjct: 210 TYGHQAGDECLKQVADILRKAAKRPADVVARYGGEEFVVILPNTSLRGAMQVAESIRSKL 269

Query: 204 ENSQI-NISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++  I +  SG S  +T+S G+A      K     +I  ADQALY AK  GR+RVV
Sbjct: 270 KSRAIVHEGSGVSKFVTLSCGVAGVIPPPKTTPDRLIAEADQALYKAKVEGRDRVV 325


>gi|167622059|ref|YP_001672353.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167352081|gb|ABZ74694.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 485

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 115/242 (47%), Gaps = 11/242 (4%)

Query: 23  SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL 82
           SP T   Y     +IF+ + +     +   +      G + +L    + + +S+ +++ +
Sbjct: 246 SPSTSFSYQKAGKTIFLNSRLVPEFKWHLIVEQDEARGEQKLLTTFWANIGLSLLVTIGV 305

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFD 135
             I+   L +      ++  ++  D L+G  N  AF     +        +  +S++  D
Sbjct: 306 LIIANMTLGK---YQRKLELMASTDKLTGAANRQAFEEHFANSLTRSVLDSRPMSLLLMD 362

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK +ND++GH +GD VI  +S  L         + R GGEEF       S  +++ L
Sbjct: 363 IDHFKLVNDSYGHNIGDLVIQTVSHMLKSQLKEDDLLCRWGGEEFLILLPNCSLSQSSEL 422

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A  +R+++    + + +G  I++T+S G A+    E    +I R D ALY AK+ GRNRV
Sbjct: 423 AERIRELVAGRLLRV-NGCEINVTLSCGAAQHRASETAEDLINRVDIALYQAKEQGRNRV 481

Query: 256 VC 257
           V 
Sbjct: 482 VL 483


>gi|77461097|ref|YP_350604.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Pseudomonas fluorescens Pf0-1]
 gi|77385100|gb|ABA76613.1| putative sensory box GGDEF/EAL domain protein [Pseudomonas
            fluorescens Pf0-1]
          Length = 1282

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 15/192 (7%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            S + E   S  RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 831  SDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQSAERQKSWVVLMFLDLDRFK 890

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAIL 195
             IND+ GH  GD+++  ++ +L+        V R+GG+EF       S +E     A  +
Sbjct: 891  PINDSLGHAAGDRMLKDMATRLLACVDDDDTVARMGGDEFTLLLQHRSSREMALNRAIHV 950

Query: 196  ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            A  +   +   +  +  G    +T S GIA        +S ++  AD A+Y AK+ G+N 
Sbjct: 951  AEQILGSL--VRPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKERGKNN 1008

Query: 255  VVCFSDIENNTC 266
               +    N + 
Sbjct: 1009 FQFYQADMNASA 1020


>gi|146291605|ref|YP_001182029.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
 gi|145563295|gb|ABP74230.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
          Length = 624

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 11/180 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL     ++++ S ID L+G+ N SAF   L             ++++  DID FK I
Sbjct: 439 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLLAESRISRRQETPIAVLMLDIDKFKSI 498

Query: 143 NDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD+ +  ++  L          V R GGEEFA     ++   A  +A  +R 
Sbjct: 499 NDQFGHLAGDQALKIIAQTLQQNLKRPTDLVSRFGGEEFAIILPNTTADGALQVAETIRD 558

Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +  + +  G  I +T+S G++       +  +T++ +AD+ALY AK SGRN+V  +S
Sbjct: 559 AVTSIGL-MWEGKPIPLTVSIGVSADIVASDQHSTTLLEQADKALYQAKNSGRNQVKLYS 617


>gi|300866972|ref|ZP_07111644.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
 gi|300335076|emb|CBN56810.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
          Length = 559

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 16/192 (8%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           +      + + L  +   + +L+ +D L+GL N   F   L             +S++  
Sbjct: 365 IAIQQSQLYQRLEAANGELQRLASLDGLTGLANRRQFDEYLEYEWLRSLRNGGSISLILC 424

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           D+D+FK  ND +GH  GD+ +  +++ +         F  R GGEEFA     + +Q A 
Sbjct: 425 DVDFFKLYNDTYGHQAGDECLKKVAEAINEARQQPGDFAARYGGEEFAVILPCAEKQRAL 484

Query: 194 ILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKE-------PISTIIYRADQALY 245
            +A D+R+ I   QI  ++   S  +++S G+A    K+           +I  AD+ALY
Sbjct: 485 EVAEDIRRRIAVLQIPHATSKVSEFVSVSLGVANFVGKQWQPVSSVSREGLIAMADKALY 544

Query: 246 VAKKSGRNRVVC 257
            AK+ GR+R V 
Sbjct: 545 QAKQEGRDRTVV 556


>gi|261218603|ref|ZP_05932884.1| diguanylate cyclase [Brucella ceti M13/05/1]
 gi|261222225|ref|ZP_05936506.1| diguanylate cyclase [Brucella ceti B1/94]
 gi|261317692|ref|ZP_05956889.1| diguanylate cyclase [Brucella pinnipedialis B2/94]
 gi|261321900|ref|ZP_05961097.1| diguanylate cyclase [Brucella ceti M644/93/1]
 gi|261325151|ref|ZP_05964348.1| diguanylate cyclase [Brucella neotomae 5K33]
 gi|261752361|ref|ZP_05996070.1| diguanylate cyclase [Brucella suis bv. 5 str. 513]
 gi|261758244|ref|ZP_06001953.1| diguanylate cyclase [Brucella sp. F5/99]
 gi|265988725|ref|ZP_06101282.1| diguanylate cyclase [Brucella pinnipedialis M292/94/1]
 gi|265998190|ref|ZP_06110747.1| diguanylate cyclase [Brucella ceti M490/95/1]
 gi|260920809|gb|EEX87462.1| diguanylate cyclase [Brucella ceti B1/94]
 gi|260923692|gb|EEX90260.1| diguanylate cyclase [Brucella ceti M13/05/1]
 gi|261294590|gb|EEX98086.1| diguanylate cyclase [Brucella ceti M644/93/1]
 gi|261296915|gb|EEY00412.1| diguanylate cyclase [Brucella pinnipedialis B2/94]
 gi|261301131|gb|EEY04628.1| diguanylate cyclase [Brucella neotomae 5K33]
 gi|261738228|gb|EEY26224.1| diguanylate cyclase [Brucella sp. F5/99]
 gi|261742114|gb|EEY30040.1| diguanylate cyclase [Brucella suis bv. 5 str. 513]
 gi|262552658|gb|EEZ08648.1| diguanylate cyclase [Brucella ceti M490/95/1]
 gi|264660922|gb|EEZ31183.1| diguanylate cyclase [Brucella pinnipedialis M292/94/1]
          Length = 255

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 118/232 (50%), Gaps = 14/232 (6%)

Query: 43  IFIANIFLFYIG---LTPFYGLEY--ILVENLSLVIISITISLLLGYISGS--ILKE--- 92
           +   ++ LF +G   +T F+  E   ++  +LSL    + I     +I      LKE   
Sbjct: 1   MLTLSVVLFCVGATSITAFWSGETPGLMAISLSLGFPLVMIFPFSAFIFLRYDKLKEAYA 60

Query: 93  -LFISYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGH 148
            L  S+  +   +RID ++GLLN  A   ++    S  E  +++  D D+FK IND+FGH
Sbjct: 61  QLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGH 120

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+  
Sbjct: 121 GVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPF 180

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV   +
Sbjct: 181 HTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVVFDEE 232


>gi|91201479|emb|CAJ74539.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 344

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 60/185 (32%), Positives = 87/185 (47%), Gaps = 11/185 (5%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132
           L L  +     +EL  +  ++ QLSR D L+GL N   F   L           + LS++
Sbjct: 156 LTLAQVLEKTNQELQQANEKLHQLSRTDSLTGLANRRFFDEMLHNEWKQSVRLAKPLSLL 215

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLS-DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
             DID+FK  ND +GH  GD+ +  +S   L  +      + R GGEEF A    + E  
Sbjct: 216 MIDIDFFKNYNDTYGHQKGDECLKRVSMAILSALKRECDIIARYGGEEFVALLSDTDESG 275

Query: 192 AAILANDLRKIIENSQINISSG-PSIHITISAGIA--ERCHKEPISTIIYRADQALYVAK 248
           A ++A  ++  IE   I       S  IT+S GI+            +I +AD+ALY+AK
Sbjct: 276 AVMVAKAMQSNIEAMNIPHKDSNASGRITVSIGISNEVPSAASSPEKLISKADKALYLAK 335

Query: 249 KSGRN 253
             GRN
Sbjct: 336 YEGRN 340


>gi|330830342|ref|YP_004393294.1| GGDEF domain-containing protein [Aeromonas veronii B565]
 gi|328805478|gb|AEB50677.1| GGDEF domain protein [Aeromonas veronii B565]
          Length = 834

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 16/196 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-GSYNEK------LSIVFFDID 137
           I    + E   +  RI  L+  D L+GL N      +L  ++NE        +++F D+D
Sbjct: 369 ICFEDISERKAAERRIQDLAYYDELTGLPNRRQLHETLVQTFNEATRDGLIGALLFIDLD 428

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS------EQE 191
           +FK IND+ GH  GD ++  ++ +L  +      + RLGG+EF       S      E +
Sbjct: 429 HFKTINDSLGHATGDWLLKEVAARLKRLVRQGDCLARLGGDEFVLLLPSLSASPPQAEMQ 488

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKS 250
           A I+A  L  I E +      G  +HI  S GI     +E  +  ++ +AD A+Y AK +
Sbjct: 489 ADIIAERL--ITEIAAPYTYVGQVLHIGASVGITLFPDREQGVDDLLKQADTAMYQAKSA 546

Query: 251 GRNRVVCFSDIENNTC 266
           GR     F        
Sbjct: 547 GRKTRRFFDASMQQQA 562


>gi|304391595|ref|ZP_07373537.1| response regulator PleD [Ahrensia sp. R2A130]
 gi|303295824|gb|EFL90182.1| response regulator PleD [Ahrensia sp. R2A130]
          Length = 457

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 95/179 (53%), Gaps = 9/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
            +  +L  S +   +++  D L+GL N   F + +          N+ LS++  DID+FK
Sbjct: 276 RLNDQLRASVHNTMEMAVTDGLTGLNNRRYFDNHMQGLLQKANLANKPLSLIIMDIDHFK 335

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GH VGD V+   +++++          R GGEEF  A   +  + A ++A+ +R
Sbjct: 336 HVNDTYGHQVGDDVLKIFAERVLKNVRNKDLACRFGGEEFIVAMPDTDRELAFVVADRMR 395

Query: 201 KIIENSQINISSG-PSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +      + +G   I IT+SAG+A      E + T++ RAD+ LY AK+ GRN+VV 
Sbjct: 396 REVSAHPFIVDNGRQQISITVSAGVAGIAGPNETVETMLKRADERLYDAKRRGRNQVVA 454


>gi|260776227|ref|ZP_05885122.1| putative virulence-mediating protein VirC [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260607450|gb|EEX33715.1| putative virulence-mediating protein VirC [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 634

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 61/195 (31%), Positives = 95/195 (48%), Gaps = 11/195 (5%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNE 127
           I+ IT+   L Y+    L ++      +   +  D L+GL N     + L        ++
Sbjct: 438 ILFITLFFALAYLVIRRLWKMKRITKELESQNTTDPLTGLANRRYIENWLSQSDNVQQHK 497

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
             ++   DID+FKQ ND  GH VGD V+   ++QL     +   + R GGEEF       
Sbjct: 498 SYALSVIDIDHFKQFNDTHGHDVGDTVLKATANQLKNNTRSHDIIARWGGEEFVMIIPID 557

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST----IIYRADQA 243
           +          LRK +E+ +I+I    S+ +TIS G  + CH + I T    +  +AD+A
Sbjct: 558 NVHTVEETLERLRKSVESHKIHIDED-SLAVTISVG-TQLCHYQDIETDWDRVFRKADKA 615

Query: 244 LYVAKKSGRNRVVCF 258
           LY AK+SGRN+ + F
Sbjct: 616 LYQAKQSGRNKCITF 630


>gi|217975096|ref|YP_002359847.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Shewanella baltica OS223]
 gi|217500231|gb|ACK48424.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS223]
          Length = 1508

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 11/186 (5%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            + + +   +   +  L+  D L+GL N + F   L          N  ++++F D+D FK
Sbjct: 1062 TDITQRKKAEEDLRFLASFDTLTGLPNRTLFQDRLNHAITQAHRANNIVALLFLDLDRFK 1121

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDL 199
             IND+ GH VGD ++  ++ +L         V RLGG+EF     G ++ +AA +++  +
Sbjct: 1122 HINDSMGHHVGDLLLKAVARRLQNAVRDGDTVARLGGDEFTIILEGVAKTKAATLISEKV 1181

Query: 200  RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             +  +     +    ++ I+ S GI+   +  +   ++I  AD A+Y AK SGRN    +
Sbjct: 1182 LRAFQT--PFLLDDKTLTISTSIGISLYPNDADNADSLIKFADTAMYHAKSSGRNNFQFY 1239

Query: 259  SDIENN 264
            +   N 
Sbjct: 1240 TSKLNE 1245


>gi|291570883|dbj|BAI93155.1| PleD-like protein [Arthrospira platensis NIES-39]
          Length = 1040

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 12/194 (6%)

Query: 76   ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEK 128
            +T  L +    G +  +L I++  + ++  +D L+G+ N   F          L    + 
Sbjct: 839  LTEQLAIAIQQGELYHQLQIAHQELEKVYNLDALTGIPNRRHFDHVLQHEWLQLQREQQP 898

Query: 129  LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGS 187
            LSI+  DIDYFK  ND +GH  GDK +  ++D L          V R GGEEF      +
Sbjct: 899  LSIIMCDIDYFKCYNDTYGHIAGDKCLEKVADALKKCLKRPRDLVARYGGEEFVILLPNT 958

Query: 188  SEQEAAILANDLRKIIENSQINISSGPS--IHITISAGIAE--RCHKEPISTIIYRADQA 243
              + A  ++  +++ +    +   + P+    +T+S GIA      ++  + +I+ AD A
Sbjct: 959  PTEGAIEISQQIQEAVFELNMEPGAIPANFQRVTMSMGIASQIPTPQQSPTQLIFTADCA 1018

Query: 244  LYVAKKSGRNRVVC 257
            LY AK +GRN+ V 
Sbjct: 1019 LYQAKNNGRNQYVI 1032


>gi|261855860|ref|YP_003263143.1| diguanylate cyclase with PAS/PAC sensor [Halothiobacillus
           neapolitanus c2]
 gi|261836329|gb|ACX96096.1| diguanylate cyclase with PAS/PAC sensor [Halothiobacillus
           neapolitanus c2]
          Length = 423

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 90/179 (50%), Gaps = 8/179 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             + E       + +L+  D L+G+ N    +  L          N  L +   D+D+FK
Sbjct: 240 RDITERMQLERELERLATTDELTGIANRRQILQQLDHAYKRFIRLNHSLVVFILDLDFFK 299

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GH  GD ++     ++        ++GRLGGEEF      +S++ A  +   + 
Sbjct: 300 NVNDQYGHVSGDILLKEFIARVQQQIREIDYLGRLGGEEFLLILDETSKETAEQIGQRIL 359

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
           +++  +  ++ +G S+ IT+S G    CHK+  I+ ++  AD+ALY AK SGRN++  +
Sbjct: 360 QVVRQTPFDLGAGVSVTITVSIGATSACHKDAKITELLEHADKALYAAKDSGRNKICWY 418


>gi|218517144|ref|ZP_03513984.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli 8C-3]
          Length = 408

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 11/182 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
              + EL  S  +I Q++  D L+GL N + F   L        S  ++  ++  D+D+F
Sbjct: 141 ARDITELDTSRKKIHQMAFYDSLTGLPNRTLFNERLREMIGDAASAGQRAGVMLIDMDHF 200

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND  GHPVGD+++  ++ ++         V RLGG+EFA          + A +A+ 
Sbjct: 201 KAINDTMGHPVGDELLRQVATRMKKGVRASDTVARLGGDEFAVLLPNVQDNDDLAQIASR 260

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVC 257
           +       +  + S   I ++ S GI+   +       ++  AD A+Y+AK+SGR+    
Sbjct: 261 MLAAF--GERFMLSDREIFVSCSIGISVFPNDGDAPDDLVKYADSAMYLAKRSGRSNFRF 318

Query: 258 FS 259
           +S
Sbjct: 319 YS 320


>gi|117923620|ref|YP_864237.1| diguanylate cyclase [Magnetococcus sp. MC-1]
 gi|117607376|gb|ABK42831.1| diguanylate cyclase [Magnetococcus sp. MC-1]
          Length = 464

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 12/183 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           ++   L+++     +  + S  D L+ + N  A   SL         Y E LS++  D+D
Sbjct: 269 LTRKQLQQVQDDLKKAKEESLTDPLTQVANRRALFQSLTRETARTRRYGEPLSLIIIDLD 328

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK+IND +GHPVGD+V+  ++     +      + R GGEEF A    ++  +A   A 
Sbjct: 329 HFKKINDTYGHPVGDRVLKEVAGHARALLRDSDTLARYGGEEFVALLPETTLPQAMEKAE 388

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS----TIIYRADQALYVAKKSGRN 253
            +R  +   +  +  G S+ I+ S G+A+              ++RADQALY AK  GRN
Sbjct: 389 QIRLSVAAMRFKLK-GESLSISASLGVAQLDDGASQDANNEAFVHRADQALYRAKSGGRN 447

Query: 254 RVV 256
            V+
Sbjct: 448 CVI 450


>gi|329849066|ref|ZP_08264094.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
 gi|328844129|gb|EGF93698.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
          Length = 747

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 11/188 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVF 133
           +L   +   ++    +  R+  L+  D L+GL N +  +  LG         + ++ ++ 
Sbjct: 249 MLAQCTFRDVRARKEAEARVRYLAMHDALTGLPNRTLLMDRLGQAIAHARRDHSQVGLLL 308

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEA 192
            D+D+FK +ND+ GH +GD ++  ++ +L  V        RLGG+EF  AA   +S  +A
Sbjct: 309 LDLDHFKHVNDSLGHFIGDGLLEEVARRLRSVLRESDTPARLGGDEFVIAASNLNSPADA 368

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
            ILA  +   +E   + +  G ++ I  S GIA      +  ++++  AD A+Y AKK G
Sbjct: 369 EILARRILTALE--PVCVVQGHNLRIGTSIGIAMYPGDGDNPASLLQAADTAMYQAKKKG 426

Query: 252 RNRVVCFS 259
           R     F+
Sbjct: 427 RGTYRLFT 434


>gi|296132855|ref|YP_003640102.1| diguanylate cyclase [Thermincola sp. JR]
 gi|296031433|gb|ADG82201.1| diguanylate cyclase [Thermincola potens JR]
          Length = 383

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 68/249 (27%), Positives = 117/249 (46%), Gaps = 16/249 (6%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITI 78
           +E  SP  F    +++  + ++  +   N  + ++ +   Y  + +  + ++LV  +   
Sbjct: 127 MEKKSPSFFGPEHNLYIPLLMSVPLVSRNKVIGFVNIHSMYQNKSLTPDKIALV--NALA 184

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           S     IS + L      +N + + + ID  + L N   F   L             LS+
Sbjct: 185 SQASIAISNAQL------FNAMKEQATIDPCTNLFNFRYFQQKLDEEINKAAANGTALSL 238

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK++ND +GH  GD+V+  +S  L     +   V R GGEEFA      +++ 
Sbjct: 239 IILDIDFFKKVNDTYGHLYGDQVLHEISKILKSNVRSEDTVCRYGGEEFAIIFPNCTQKI 298

Query: 192 AAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           A  +A  +R  IE +  N   G     +T+S G+AE       + +I+RAD +LY AK +
Sbjct: 299 AERIAERIRAKIEETTANDRRGIFKSPVTVSIGVAEYTPDINKTMLIHRADCSLYYAKNT 358

Query: 251 GRNRVVCFS 259
           GRNRV  + 
Sbjct: 359 GRNRVCGYD 367


>gi|264677429|ref|YP_003277335.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262207941|gb|ACY32039.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 514

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 15/222 (6%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLLLGYI-----SGSILKELFISYNRISQLSR 105
           F I +   +   Y +    +L+I S+  +L + +I      G  LK    + + ++ L+R
Sbjct: 287 FIIMVAKAHSDIYAVWRQRALLIASVMGTLTMAFIGLSFAFGVQLKRRMRAESELALLAR 346

Query: 106 IDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+GL N                  +   S++F DID+FK  ND +GH  GD V+A +
Sbjct: 347 TDGLTGLNNRRKLDEIIEHEWHRAKRSHSAFSLLFVDIDWFKAYNDTYGHQAGDMVLATV 406

Query: 159 SDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +  +      P     R GGEEF      ++    A++A ++R+ +    I  +      
Sbjct: 407 ARCIASNIRRPEDSAARYGGEEFIVVLPDTTLDGGALIAENIREAVSELAIAHTGSEFGC 466

Query: 218 ITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVC 257
           IT+S G A     + +    ++  AD+ALY AK +GRN+VV 
Sbjct: 467 ITVSIGCAAWVPGKDLDVQEVLRSADKALYGAKMTGRNKVVL 508


>gi|242241092|ref|YP_002989273.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Dickeya
           dadantii Ech703]
 gi|242133149|gb|ACS87451.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Dickeya
           dadantii Ech703]
          Length = 678

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 128/271 (47%), Gaps = 32/271 (11%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLE------ 62
           +++WL     L             +F  +  A VI  A   + YIG +P           
Sbjct: 156 IAMWLAFSLRLRQ----------RLFARLAAALVIGAAIAAIQYIGFSPLAHYHGDSVNQ 205

Query: 63  ---YILVENLSLVIIS--ITISLLLGYISGSILKE-LFISYNRISQLSRIDCLSGLLNHS 116
               + V  +SL+I+   + IS+L      S L + L  + +++++L+  D L+GL N  
Sbjct: 206 RELSVWVSAISLLILGAMLVISMLDAQWRASRLTDSLRQANDQLARLAMHDALTGLPNRM 265

Query: 117 AFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
                L         + +  ++++ D+D FK +ND +GH +GD+++A ++ +L    G  
Sbjct: 266 QLERELESCLHHARQHRQTFALMYMDLDGFKIVNDAWGHYLGDQLLAGVTTRLREYLGPG 325

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC- 228
           M + R+GG+EF        E++AA LA+ L + IE  Q    SG ++ +T+S GI+    
Sbjct: 326 MTLARIGGDEFVLLMRDCGEEQAAALADKLVQAIE--QPFHQSGYTLRVTLSVGISLFPR 383

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                  +   AD A+Y  K++GRN  + +S
Sbjct: 384 DGATSHDLRLNADTAMYSIKQTGRNGWIFYS 414


>gi|171318964|ref|ZP_02908093.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
 gi|171095807|gb|EDT40757.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
          Length = 510

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 93/210 (44%), Gaps = 18/210 (8%)

Query: 72  VIISITISLLLGYIS------GSILKELFISYNRISQLSRIDCLSGLLNHSAFI------ 119
           +  ++ + L   +I+         L+   ++ +++ +L+  D L+GL N   F       
Sbjct: 302 IWTAVLMGLFTAFIAWGSLALSRELRRRQLAESKLYRLAHTDSLTGLDNRGTFDAVLAKE 361

Query: 120 -SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGG 177
                     LS++F D+D+FK  ND +GH  GD V+  ++             V R GG
Sbjct: 362 AQRASRSGRPLSVLFVDVDHFKAFNDYYGHLAGDDVLRRIAQTASRCLRRDSDHVARYGG 421

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTI 236
           EEF      +  + AA +A  +R+ I    I     P  H+T S G A         + +
Sbjct: 422 EEFVVTLPDTDARGAATVAEAIRRAIAGLDIAHGRSPYGHVTTSIGTATATGGRVNAAAL 481

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           +  AD+ALY AK  GRNRV   SD E +T 
Sbjct: 482 LRLADEALYRAKSGGRNRV---SDAEASTA 508


>gi|189426489|ref|YP_001953666.1| diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ]
 gi|189422748|gb|ACD97146.1| diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ]
          Length = 646

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 18/216 (8%)

Query: 58  FYGLEYILVENLSLVIISITISLLL--GYISGSI-----LKELFISYNRISQLSRIDCLS 110
           + G E  + +N  L+++ +    +L  G I GS+     + E      ++  LS  D L+
Sbjct: 434 YEGEEQFIQKNGDLLMVEVASQPMLKSGRIIGSVTVFRDITERKQLEEQLRLLSITDPLT 493

Query: 111 GLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           G+ N      +L         + E  S++  DID+FKQ+ND +GH VGD+V+  L   + 
Sbjct: 494 GVYNRRFLQETLLKELCRAERHGEPFSLIMLDIDHFKQVNDRYGHDVGDQVLRHLVKLIQ 553

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
               +   + R GGEEF      +    AA LA  L + +  S++         +T S G
Sbjct: 554 KRIRSSDCLARWGGEEFIVLLPHTGLLAAAALAETLLEDLRVSELKGVG----CVTASFG 609

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +A     + +  +  RAD  +Y+AK++GRN V   S
Sbjct: 610 VAVSRPGDTVEQLGQRADALMYLAKQAGRNCVRAES 645


>gi|271498992|ref|YP_003332017.1| diguanylate cyclase [Dickeya dadantii Ech586]
 gi|270342547|gb|ACZ75312.1| diguanylate cyclase [Dickeya dadantii Ech586]
          Length = 501

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 59/200 (29%), Positives = 101/200 (50%), Gaps = 14/200 (7%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI---SS 121
           L++N  + I +    LLL +++      +     R+  ++  D L+GL+N  AF     +
Sbjct: 307 LLKNTGISITASIAMLLLIWLT------IGAYQRRLELMATTDKLTGLMNRQAFEYIFRT 360

Query: 122 LG----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
           L     +     SI+  D+D+FK+IND +GH +GD+V+   +  +           R GG
Sbjct: 361 LRMKQSAQQRTFSIILIDLDFFKKINDQYGHHIGDRVLVKTARLIQRAIRKTDSACRWGG 420

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EEF       S  +A  +A  +R+ +  + ++      I++TIS G+AE    E I  ++
Sbjct: 421 EEFVLLLGDCSLHQAHRVAEKIRQAVHFALVSHRH-QVINLTISCGVAESNPGESIDHLV 479

Query: 238 YRADQALYVAKKSGRNRVVC 257
            RAD+ALY AK+ GR++ V 
Sbjct: 480 QRADKALYQAKRQGRDQAVM 499


>gi|126173489|ref|YP_001049638.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS155]
 gi|125996694|gb|ABN60769.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS155]
          Length = 921

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 11/207 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFI--- 119
           I  +N+++  I   +  +  +++  + +     +  +++ L+  D L+ L N   F+   
Sbjct: 456 IFPQNITISTIYDEVGDVRYFVAVFADISAQKENEAQLTHLAYFDPLTHLPNRMKFMMQL 515

Query: 120 ----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     N +L+ V  D+D FK IND+FGH +GD+++  L+ +L    G    + R+
Sbjct: 516 KQEVRQAKRLNLQLATVMIDVDLFKHINDSFGHSIGDEMLVELAKRLRSQVGDQDVLSRI 575

Query: 176 GGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF A   G    E A +A N LR++ E     +S+G  + +T S G++         
Sbjct: 576 GGDEFVALISGIDNNEDATVAINQLRQVFEQ-PFIVSTGDHLRLTASMGVSLYPNDGTDA 634

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSD 260
            T++  AD A+Y AK  GRN    +++
Sbjct: 635 DTLLRNADAAMYRAKNDGRNNYAFYTE 661


>gi|134292823|ref|YP_001116559.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
 gi|134135980|gb|ABO57094.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
          Length = 510

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 94/199 (47%), Gaps = 15/199 (7%)

Query: 72  VIISITISLLLGYISG------SILKELFISYNRISQLSRIDCLSGLLNHSAFI------ 119
           +  ++ + L   +I+G        LK   I+ +++ +L+  D L+G+ N   F       
Sbjct: 302 IWTAVLMGLFTAFIAGGSLALSRELKRRQIAESKLYRLAHTDSLTGVENRGTFDTVLTKE 361

Query: 120 -SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGG 177
                     LS++F D+D+FK  ND++GH  GD V+  ++             V R GG
Sbjct: 362 AQRASRSGRPLSVLFVDVDHFKAFNDHYGHLAGDDVLRRVAQTASRCLRRNSDHVARYGG 421

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTI 236
           EEF      +  + AA +A+ +R+ I    I     P  H+T+S G+A         +T+
Sbjct: 422 EEFVVTLPDTDARGAATVADAIRRSIAALDIAHERSPYGHLTVSIGVATAVGGRVSAATL 481

Query: 237 IYRADQALYVAKKSGRNRV 255
           +  AD+ALY AK  GRNRV
Sbjct: 482 LRLADEALYRAKSGGRNRV 500


>gi|117926705|ref|YP_867322.1| diguanylate cyclase [Magnetococcus sp. MC-1]
 gi|117610461|gb|ABK45916.1| diguanylate cyclase [Magnetococcus sp. MC-1]
          Length = 513

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 64/212 (30%), Positives = 99/212 (46%), Gaps = 12/212 (5%)

Query: 61  LEYILVENLSLVIISITISLLLGYI--SGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +  ++VE    V+    I  L  ++  S S++ E      ++ + +  D L+GL N    
Sbjct: 288 VVQLVVEPDMAVMFPYIIPFLQVFLRESSSVI-ESKRLMEKLRESALKDPLTGLNNRRFL 346

Query: 119 ISS----LGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  + S   K   LS++  D+D+FK +ND  GH VGD V+  L+  L+        
Sbjct: 347 EEYERTIVASSQRKEMFLSVLMMDLDHFKMVNDTHGHQVGDAVLKSLAGVLMQQTRASDL 406

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           V R GGEEF              +A  +R+ +E  +IN+  G  +  TIS G+AE     
Sbjct: 407 VVRYGGEEFMVVLQNERPHMGNQIAEKIRETVERLKINVPGGC-LQKTISIGVAEFPTDG 465

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
                ++ +AD ALY AK+ GRNRV+  S  E
Sbjct: 466 TDFDDVVEKADMALYRAKEQGRNRVISHSASE 497


>gi|315266684|gb|ADT93537.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS678]
          Length = 920

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 11/207 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFI--- 119
           I  +N+++  I   +  +  +++  + +     +  +++ L+  D L+ L N   F+   
Sbjct: 455 IFPQNITISTIYDEVGDVRYFVAVFADISAQKENEAQLTHLAYFDPLTHLPNRMKFMMQL 514

Query: 120 ----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     N +L+ V  D+D FK IND+FGH +GD+++  L+ +L    G    + R+
Sbjct: 515 KQEVRQAKRLNLQLATVMIDVDLFKHINDSFGHSIGDEMLVELAKRLRSQVGDQDVLSRI 574

Query: 176 GGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF A   G    E A +A N LR++ E     +S+G  + +T S G++         
Sbjct: 575 GGDEFVALISGIDNNEDATVAINQLRQVFEQ-PFIVSTGDHLRLTASMGVSLYPNDGTDA 633

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSD 260
            T++  AD A+Y AK  GRN    +++
Sbjct: 634 DTLLRNADAAMYRAKNDGRNNYAFYTE 660


>gi|325969963|ref|YP_004246154.1| diguanylate cyclase with PAS/PAC sensor [Spirochaeta sp. Buddy]
 gi|324025201|gb|ADY11960.1| diguanylate cyclase with PAS/PAC sensor [Spirochaeta sp. Buddy]
          Length = 306

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 92/175 (52%), Gaps = 5/175 (2%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNF 146
           + E    + ++ +LS +D L+GL N   F+  +  +     +  I+  DID FK +ND +
Sbjct: 128 ITERRNLHKKLRELSYVDPLTGLYNRRYFLERVRIHLMEKGEAHIMLCDIDRFKDVNDQY 187

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD V+   +     V      + RLGG+EF  A    ++++A  +   LRK +E +
Sbjct: 188 GHLAGDAVLKEFARIARDVLKHNHAIARLGGDEFVMALTDLTDEQAYEVGESLRKRVEET 247

Query: 207 QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
            I   S   + I IS GIA+   ++   S +I  AD+ALY AK +G+NRV  FSD
Sbjct: 248 SIYYQSTV-LSICISIGIAKLSFEDLEKSELIADADRALYQAKAAGKNRVCLFSD 301


>gi|170698468|ref|ZP_02889540.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
 gi|170136639|gb|EDT04895.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
          Length = 510

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 93/210 (44%), Gaps = 18/210 (8%)

Query: 72  VIISITISLLLGYIS------GSILKELFISYNRISQLSRIDCLSGLLNHSAFI------ 119
           +  ++ + L   +++         L+   I+ +++ +L+  D L+GL N   F       
Sbjct: 302 IWTAVLMGLFTAFVAWGSLALSRELRRRQIAESKLYRLAHTDSLTGLDNRGTFDAVLAKE 361

Query: 120 -SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGG 177
                     LS++F D+D+FK  ND +GH  GD V+  ++             V R GG
Sbjct: 362 AQRASRSGRPLSVLFVDVDHFKAFNDYYGHLAGDDVLRRVAQSASRCLRRDSDHVARYGG 421

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTI 236
           EEF      +  + AA +A  +R+ I    I     P  H+T S G A         + +
Sbjct: 422 EEFVVTLPDTDARGAATVAEAIRRAIAGLDIAHGRSPYGHVTTSIGTATATGGRVNAAAL 481

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           +  AD+ALY AK  GRNRV   SD E +T 
Sbjct: 482 LRLADEALYRAKSGGRNRV---SDAEASTA 508


>gi|327189306|gb|EGE56474.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 355

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 8/183 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKL-----SIVFFDIDYFKQIN 143
           + ++    +   +++  D L+ L N  AF   L + +N        +++  DID FK+IN
Sbjct: 162 MDQVRKELDEYKRIANTDSLTRLSNRRAFDDRLAAVFNNPGMRPVTALLLADIDNFKKIN 221

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHPVGDK++A ++  +       +FV R GGEEFA    G++ +E A +A  +R+ +
Sbjct: 222 DTYGHPVGDKILATVASVIRSNVRRDVFVARAGGEEFALIIEGNTAEEVAAIAERIRRTL 281

Query: 204 ENSQINISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E +    S     +  IT+S GI    + E    +  RAD ALY AK +GRN +V + D 
Sbjct: 282 ETTPFKNSRTRVNYGPITVSIGICMASNAEDAGELYSRADIALYGAKNAGRNCIVLYQDG 341

Query: 262 ENN 264
              
Sbjct: 342 MQK 344


>gi|307719092|ref|YP_003874624.1| hypothetical protein STHERM_c14110 [Spirochaeta thermophila DSM
           6192]
 gi|306532817|gb|ADN02351.1| hypothetical protein STHERM_c14110 [Spirochaeta thermophila DSM
           6192]
          Length = 528

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 70/245 (28%), Positives = 110/245 (44%), Gaps = 25/245 (10%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL---VIISITISLLLGYISGSI 89
           +  ++  A   + A+ FL    +TP   L   L   +S    V ++      +G I+  I
Sbjct: 287 LLVALLAAGSGWAASRFLTGHIITPLTTLRADLERVISGDPGVPLADYPDNEVGEIAKGI 346

Query: 90  LK----ELFISYN-------RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSI 131
            +    EL+           R+  LS  D L+ L N       L         Y    S+
Sbjct: 347 EQITRTELYRKNQTLKALNTRLEILSITDPLTSLFNRRKLQEELTREYQRALRYGSPFSL 406

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  D+D+FK IND FGH  GD+V+ ++++ L     +   VGR GGEEF      +   E
Sbjct: 407 ILIDLDHFKAINDTFGHGKGDEVLKWIAEALRTQLRSTDIVGRWGGEEFLVLCPETRLSE 466

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A ++A  L   I  +       PS  +TISAG+A     + +  ++  AD+ LY AK+SG
Sbjct: 467 AGLIATKLGNEIARTSPL----PSYRVTISAGVASFSTGKSLEDLLKEADKKLYRAKESG 522

Query: 252 RNRVV 256
           RN ++
Sbjct: 523 RNTII 527


>gi|218528564|ref|YP_002419380.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
 gi|218520867|gb|ACK81452.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
          Length = 506

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 64/221 (28%), Positives = 107/221 (48%), Gaps = 12/221 (5%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQL 103
            I N+ L    +   +  + I++  + LV+  +T++L L  + G  L+        +++L
Sbjct: 270 LILNVALAVDEVEAGWRTKAIVIGTVVLVLCGLTVALSL--LFGRELRRRAAMQAELARL 327

Query: 104 SRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S  D L+GL N   F  + G          + LS++  D D+FK+ ND  GH VGD+V+ 
Sbjct: 328 SLTDALTGLPNRRRFDETFGRAVKSVGRTGKPLSLLVVDADHFKRFNDRHGHAVGDEVLR 387

Query: 157 FLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
            L+  L   V      V R+GGEEFA     +  + AA +A  + + +    +  +   +
Sbjct: 388 GLAHCLSASVHRPDDLVARVGGEEFALLLPDTDVEGAARIAAKVHETVATLGVASAGLAA 447

Query: 216 IHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +T+S G  +A     + +  +  RAD ALY AK +GRNR
Sbjct: 448 GGVTVSVGLAVANGAGADAMDDLYRRADAALYEAKAAGRNR 488


>gi|39998465|ref|NP_954416.1| GGDEF/response regulator receiver domain-containing protein
           [Geobacter sulfurreducens PCA]
 gi|39985412|gb|AAR36766.1| GGDEF/response regulator receiver domain protein [Geobacter
           sulfurreducens PCA]
 gi|298507409|gb|ADI86132.1| response receiver-modulated diguanylate cyclase [Geobacter
           sulfurreducens KN400]
          Length = 308

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 62/180 (34%), Positives = 89/180 (49%), Gaps = 10/180 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
           +  EL  S   + +LS  D L+ L N    +                LS+V  DIDYFK+
Sbjct: 127 LQDELKRSNELLRKLSITDPLTHLHNRRHLMEMVDKEFQRASRKGGALSLVILDIDYFKK 186

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH  GDKV+  L+D + +   +     R GGEEF      +  QEA  +A  LR 
Sbjct: 187 INDTYGHQEGDKVLVALADIVRLRLRSYDVAARYGGEEFVLLLPETPLQEAQAIAERLRL 246

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +++   + S    + ITIS G+A       E   ++  +AD+ALY AK++GRNRV   S
Sbjct: 247 EVQDHVFDGSLHGQV-ITISLGVATYPSPRIEGTDSLFRQADEALYRAKQNGRNRVELMS 305


>gi|170721412|ref|YP_001749100.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida W619]
 gi|169759415|gb|ACA72731.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida W619]
          Length = 699

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 86/184 (46%), Gaps = 11/184 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKL-SIVFFDI 136
                   E   ++ +I  ++  D L+GL N + F   L         N+KL + +  D+
Sbjct: 256 LFVAEDATEELAAHAQIHHMAHHDALTGLPNRTLFNERLKQALVRGHQNDKLTAALCLDL 315

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK IND+ GH  GDK++  L  +L         + RLGG+EFA    G   +EAA   
Sbjct: 316 DNFKNINDSLGHAFGDKLLRALGKRLRRELREQDTLARLGGDEFAVVLTGLDGREAA--C 373

Query: 197 NDLRKIIENSQINIS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
           N  +++IE         G    + +S GIA      E    ++  AD ALY AK++GRNR
Sbjct: 374 NTAKRLIEAICPPFQIEGHQFTVGVSIGIAIAPDDNEQAEQLLGYADMALYEAKRNGRNR 433

Query: 255 VVCF 258
             CF
Sbjct: 434 YECF 437


>gi|28871763|ref|NP_794382.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
            syringae pv. tomato str. DC3000]
 gi|28855015|gb|AAO58077.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
            tomato str. DC3000]
          Length = 1278

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 15/192 (7%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            S + E   S +RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 827  SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQQAERQQAWVVLMFLDLDRFK 886

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAA----IL 195
             IND+ GH  GD+++  ++ +L+        V R+GG+EF        + + A      +
Sbjct: 887  PINDSLGHAAGDRMLQEMATRLLACVSADDTVARMGGDEFTLLLQPDITREAALTRAIHV 946

Query: 196  ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
            A  +   +      +  G    +T S GIA        +S ++  AD A+Y AK+ G+N 
Sbjct: 947  AERILTSL--VTPFVLEGREFFVTASIGIALSPQDGSELSKLMKNADTAMYHAKERGKNN 1004

Query: 255  VVCFSDIENNTC 266
               +    N T 
Sbjct: 1005 FQFYQTDMNATA 1016


>gi|327482223|gb|AEA85533.1| GGDEF domain-containing protein [Pseudomonas stutzeri DSM 4166]
          Length = 466

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 96/205 (46%), Gaps = 17/205 (8%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G +Y L+  + +V  ++ ++ L        ++ L    +++   S+ D L+GL N +A  
Sbjct: 264 GTDYRLLMQVVVVFSAMLLTSLFW------IRRLRRLNDQLRIKSQTDSLTGLANRAALD 317

Query: 120 -------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
                       Y   LSIV  DID+FK+IND+FGH +GD+V+   +  L         V
Sbjct: 318 RRFATALEQARRYRRPLSIVMLDIDHFKRINDDFGHQMGDRVLRDFAALLDDCLRGSDAV 377

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232
           GR GGEEF      +S  +A   A  L +                 T+SAG+AE    + 
Sbjct: 378 GRWGGEEFLILCPETSGPQAVQFAERLCEQARAFPFATGVSQ----TLSAGVAELSPSDT 433

Query: 233 ISTIIYRADQALYVAKKSGRNRVVC 257
             +++ RAD ALY AK  GR+RV  
Sbjct: 434 PDSLLRRADAALYRAKHEGRDRVCW 458


>gi|160874448|ref|YP_001553764.1| PAS/PAC and GAF sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|160859970|gb|ABX48504.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS195]
          Length = 921

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 11/207 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFI--- 119
           I  +N+++  I   +  +  +++  + +     +  +++ L+  D L+ L N   F+   
Sbjct: 456 IFPQNITISTIYDEVGDVRYFVAVFADISAQKENEAQLTHLAYFDPLTHLPNRMKFMMQL 515

Query: 120 ----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     N +L+ V  D+D FK IND+FGH +GD+++  L+ +L    G    + R+
Sbjct: 516 KQEVRQAKRLNLQLATVMIDVDLFKHINDSFGHSIGDEMLVELAKRLRSQVGDQDVLSRI 575

Query: 176 GGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF A   G    E A +A N LR++ E     +S+G  + +T S G++         
Sbjct: 576 GGDEFVALISGIDNNEDATVAINQLRQVFEQ-PFIVSTGDHLRLTASMGVSLYPNDGTDA 634

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSD 260
            T++  AD A+Y AK  GRN    +++
Sbjct: 635 DTLLRNADAAMYRAKNDGRNNYAFYTE 661


>gi|332527012|ref|ZP_08403097.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Rubrivivax benzoatilyticus
           JA2]
 gi|332111447|gb|EGJ11430.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Rubrivivax benzoatilyticus
           JA2]
          Length = 687

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 11/209 (5%)

Query: 64  ILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +  E LS+  +       L Y+ S S +     +   + +L+  D L+GL N +      
Sbjct: 216 VYPEWLSVGRVVDEAGRTLNYVASFSDITARKHAEENVRRLAYYDPLTGLPNRALLQERA 275

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                      E ++++F D+D+FK +ND  GHP+GD+++  L+ ++         + R+
Sbjct: 276 SQALQIAVRTGEPVALMFLDLDHFKNVNDTLGHPIGDRLLVALAQRMRPALRDQDTLARV 335

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPIS 234
           GG+EF      +    A+ +A  L +I++  +     G  + +T S G+A          
Sbjct: 336 GGDEFVLVLPSTDATGASYVAQKLLQIVQ--EPVQLDGHDLTVTPSIGVAVFPTDAADYD 393

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T+   AD A+Y AK SGR     ++    
Sbjct: 394 TLFAFADAAMYRAKMSGRATFSFYTAEMQ 422


>gi|256829500|ref|YP_003158228.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
 gi|256578676|gb|ACU89812.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
          Length = 483

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 58/181 (32%), Positives = 82/181 (45%), Gaps = 10/181 (5%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
           + + +    +  D L+ + N   F   L         + ++LS++  D+DYFK IND +G
Sbjct: 303 LEFRKTKARADHDGLTRISNRHHFDIRLREEMKRHQRHQDELSLMMIDLDYFKSINDTYG 362

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  +   L        F  R GGEEF      + E +A ILA  LR  I  + 
Sbjct: 363 HQAGDMVLQEVGKILNNTLRESDFPARYGGEEFVVILPQTREDQAWILAERLRSQIGQT- 421

Query: 208 INISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
              S      +T S GIA  + C   P  T++  AD ALY AK +GRN V C +  E   
Sbjct: 422 FFRSQKKRFRVTASIGIAGIKPCALTPPETLLRNADTALYQAKTNGRNMVCCSAIEETQA 481

Query: 266 C 266
            
Sbjct: 482 A 482


>gi|225872968|ref|YP_002754427.1| GAF domain/GGDEF domain protein [Acidobacterium capsulatum ATCC
           51196]
 gi|225791789|gb|ACO31879.1| GAF domain/GGDEF domain protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 369

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 84/183 (45%), Gaps = 14/183 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIN 143
             L  +   + ++   D L+G+ N  AF   L    +        LS++  D+D+FK++N
Sbjct: 185 TRLKEANACLQEMVTTDALTGVKNRRAFDEGLQQAWKMSARTKSPLSLLMVDVDHFKRVN 244

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD V+  ++  L  +  +   V R GGEEF     G+  + A   A  LR  I
Sbjct: 245 DTLGHEAGDDVLRLVAQTLQFMTRSTDMVARYGGEEFVVVLPGTEAEPAVAFAEQLRLNI 304

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDIE 262
            N      S     +T+S G+            ++  AD ALY AK SGRNRV+ F D E
Sbjct: 305 ANL-----SWRGHPLTVSIGVDSGSGSGKTECELVAHADAALYRAKNSGRNRVLRF-DPE 358

Query: 263 NNT 265
            ++
Sbjct: 359 KDS 361


>gi|24375692|ref|NP_719735.1| GGDEF domain-containing protein [Shewanella oneidensis MR-1]
 gi|24350618|gb|AAN57179.1|AE015852_9 GGDEF domain protein [Shewanella oneidensis MR-1]
          Length = 625

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 92/183 (50%), Gaps = 11/183 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL     ++++ S ID L+G+ N SAF   L             ++++  DID FK I
Sbjct: 440 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLLAESRISRRQETPIALLMLDIDRFKSI 499

Query: 143 NDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD+ +  ++  L          V R GGEEFA     ++   A  +A  +R 
Sbjct: 500 NDQFGHLAGDQALKLIAQTLQQHLKRPTDLVSRFGGEEFAIILPNTTADGALQVAESIRD 559

Query: 202 IIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +    +    G  I +T+S G++     +++  + ++ +AD+ALY AK SGRN+V  ++
Sbjct: 560 TVSCIGLTW-EGKPIPLTVSIGVSADVIMNEQHSTELLEQADKALYQAKNSGRNQVKLYA 618

Query: 260 DIE 262
             +
Sbjct: 619 PAQ 621


>gi|120600461|ref|YP_965035.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|120560554|gb|ABM26481.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|319424834|gb|ADV52908.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           putrefaciens 200]
          Length = 624

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 11/180 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL     ++++ S ID L+G+ N SAF   L             ++++  DID FK I
Sbjct: 439 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLLAESRISRRQETPIAVLMLDIDKFKSI 498

Query: 143 NDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD+ +  ++  L          V R GGEEFA     ++   A  +A  +R 
Sbjct: 499 NDQFGHLAGDQALKIIAQTLQQNLKRPTDLVSRFGGEEFAIILPNTTADGALQVAETIRD 558

Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +  + +  G  I +T+S G++       +  +T++ +AD+ALY AK SGRN+V  +S
Sbjct: 559 AVTSIGL-MWEGKPIPLTVSIGVSADIVASDQHSTTLLEQADKALYQAKNSGRNQVKLYS 617


>gi|114049198|ref|YP_739748.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113890640|gb|ABI44691.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 571

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 105/239 (43%), Gaps = 12/239 (5%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           H    YF +  S+F+    F     +FY G   F  L    V  + +++ ++ ++L++ Y
Sbjct: 324 HPIAKYFLLGHSLFVG---FSGLAVMFYKGRAEFNYLSSHGV-GVGIMLEALVLALIIAY 379

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDID 137
               +L+E+  S   +   +  D L+ L N   F               + ++++  DID
Sbjct: 380 RI-RLLEEIKASQEELKYQAATDSLTQLFNRGHFHKEAQRVYTQASIAQQPMAVIICDID 438

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK++ND +GH +GD+VI  ++  L         V R GGEEF       S  EA + A 
Sbjct: 439 LFKRVNDKYGHLMGDRVIIDIATTLKQHARKCDLVARYGGEEFIMLLHNVSLTEAHLCAE 498

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +R  +        +     +T+S G+A      P+   I  AD ALY AK  GRN V 
Sbjct: 499 RIRSAVAALNFTAETQEVFTVTLSLGVATVDFDHPLEHAIKLADDALYCAKHQGRNNVQ 557


>gi|251788911|ref|YP_003003632.1| diguanylate cyclase [Dickeya zeae Ech1591]
 gi|247537532|gb|ACT06153.1| diguanylate cyclase [Dickeya zeae Ech1591]
          Length = 491

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 63/200 (31%), Positives = 100/200 (50%), Gaps = 14/200 (7%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI---SS 121
           L++N  + I      LLL +++      +     R+  ++  D L+GL+N  AF     +
Sbjct: 297 LLKNTGISITVSVAMLLLIWLT------IGAYQRRLELMATTDKLTGLMNRQAFEYVFRT 350

Query: 122 LG----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
           L     + +   SI+  D+DYFK+IND +GH VGD+V+   +  +           R GG
Sbjct: 351 LRIKQSTQHRTFSIILIDLDYFKKINDQYGHHVGDRVLVRTARLIQRTIRKTDSACRWGG 410

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EEF       S  +A  +A  +R+ I  + ++      I++TIS GIAE    E I  ++
Sbjct: 411 EEFVLLLADCSRSQAHFIAEKIRRAIRFALVSH-QHQVINLTISCGIAESHPGESIDHLV 469

Query: 238 YRADQALYVAKKSGRNRVVC 257
            RAD ALY AK+ GR++ V 
Sbjct: 470 QRADNALYQAKRQGRDQAVI 489


>gi|146309043|ref|YP_001189508.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas mendocina ymp]
 gi|145577244|gb|ABP86776.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Pseudomonas mendocina ymp]
          Length = 1244

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 88/181 (48%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           + +  L  +  R+   +  D L+GL N   F + L S        +   +++F D+D FK
Sbjct: 791 ADISSLKHAQARLDHQAHHDPLTGLPNRLLFENRLRSALDGSRAEDRAGAVLFLDLDRFK 850

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           QIND+ GHPVGD+++  ++ +L +       V RLGG+EF     G    ++A  +A  L
Sbjct: 851 QINDSLGHPVGDQLLRAIAARLKLQLRDIDTVARLGGDEFIILLPGLQQAEDADQVAQKL 910

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 +  +I       ++ S GI+        ++T++  AD A+Y +K  GRNR   +
Sbjct: 911 LDCF-TAPFDI-DHHEFFVSASIGISLYPKDGADVATLVKNADAAMYQSKAKGRNRSEFY 968

Query: 259 S 259
           +
Sbjct: 969 T 969


>gi|284053398|ref|ZP_06383608.1| signal transduction histidine kinase [Arthrospira platensis str.
            Paraca]
          Length = 1042

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 12/194 (6%)

Query: 76   ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEK 128
            +T  L +    G +  +L I++  + ++  +D L+G+ N   F          L    + 
Sbjct: 841  LTEQLAIAIQQGELYHQLQIAHQELEKVYNLDALTGIPNRRHFDHVLQHEWLQLQREQQP 900

Query: 129  LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGS 187
            LSI+  DIDYFK  ND +GH  GDK +  ++D L          V R GGEEF      +
Sbjct: 901  LSIIMCDIDYFKCYNDTYGHIAGDKCLEKVADALKKCLKRPRDLVARYGGEEFVILLPNT 960

Query: 188  SEQEAAILANDLRKIIENSQINISSGPS--IHITISAGIAE--RCHKEPISTIIYRADQA 243
              + A  ++  +++ +    +   + P+    +T+S GIA      ++  + +I+ AD A
Sbjct: 961  PTEGAIEISQQIQEAVFELNMEPGAIPANFQRVTMSMGIASQIPTPQQSPTQLIFTADCA 1020

Query: 244  LYVAKKSGRNRVVC 257
            LY AK +GRN+ V 
Sbjct: 1021 LYQAKNNGRNQYVI 1034


>gi|172037701|ref|YP_001804202.1| hypothetical protein cce_2788 [Cyanothece sp. ATCC 51142]
 gi|171699155|gb|ACB52136.1| hypothetical protein cce_2788 [Cyanothece sp. ATCC 51142]
          Length = 703

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 13/193 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           L+  YI    + +   +   +   +  D L+GL N + F   +         YN+  +++
Sbjct: 247 LIRSYIF--DITQRKKAETELKYHAFHDGLTGLPNRTFFDQHISLMIKNCERYNKSFAVL 304

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F DID FK IND  GH +GD ++   + +L         V R GG+EF          +A
Sbjct: 305 FIDIDSFKNINDTLGHTIGDCLLKCFAQRLTSQVRNSDLVCRWGGDEFVVLFSEIENPDA 364

Query: 193 -AILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
            A  +  L    E   +NI  G  I++  S GIA      +    ++  AD ALY  K+S
Sbjct: 365 VAKFSERLLNTFE-HPLNI-EGHQIYLKCSVGIALYPEDGKDTEMLLKNADSALYRTKES 422

Query: 251 GRNRVVCFSDIEN 263
           GRN    +    +
Sbjct: 423 GRNHYQFYDPEMS 435


>gi|32473997|ref|NP_866991.1| response regulatory protein [Rhodopirellula baltica SH 1]
 gi|32444534|emb|CAD74533.1| probable response regulatory protein [Rhodopirellula baltica SH 1]
          Length = 824

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 9/176 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S   +L      + + +  D L+G+ N + F S L          N   S++  DID+FK
Sbjct: 495 SDRNKLQSQIQTLHKKATSDPLTGIANRAEFDSRLVRATADSKKNNSTFSLIICDIDHFK 554

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND  GHP GD+ +   +  L         V R GGEEF   A+ S    AA  A  +R
Sbjct: 555 QVNDVHGHPAGDEALVQFARVLESHARDEDLVARYGGEEFVFLAINSDNATAARRAEQIR 614

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           K IE + ++  +G S  +T+S G+ E    +   TI+ R+D+AL  AK++GRNRVV
Sbjct: 615 KAIEVTPLDGLNGES--VTVSFGVTEYQTGDAAETILARSDRALLQAKENGRNRVV 668


>gi|163849434|ref|YP_001637478.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222527438|ref|YP_002571909.1| diguanylate cyclase with PAS/PAC sensor [Chloroflexus sp. Y-400-fl]
 gi|163670723|gb|ABY37089.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222451317|gb|ACM55583.1| diguanylate cyclase with PAS/PAC sensor [Chloroflexus sp. Y-400-fl]
          Length = 721

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 69/216 (31%), Positives = 98/216 (45%), Gaps = 21/216 (9%)

Query: 58  FYGLEYILVENLS----LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
            YGL +I  E L     +V+   TI L L  +      EL  +   + + + ID L+GL 
Sbjct: 508 IYGLLHIAGEELPRSELIVMTGDTIKLALSNL------ELRAT---LREQAIIDPLTGLY 558

Query: 114 NHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N     SSL             L+I   DID+FKQ ND +GH  GD ++  L+       
Sbjct: 559 NRRYLESSLPRELHRAQREQLPLTIAMIDIDHFKQFNDTYGHDAGDVLLRELAVIFREHL 618

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                  R GGEEF     G + + A      L   ++  +I  ++     +TIS G   
Sbjct: 619 RQSDLACRYGGEEFVLILPGVNRETARTRLQQLANTVQQRRITFANQLIGPVTISIGYIT 678

Query: 227 RCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
               E  I+T+I  AD ALY AK+ GRNRV+ F+D+
Sbjct: 679 YERGEYHITTLIQSADAALYAAKRGGRNRVIDFADL 714


>gi|302037835|ref|YP_003798157.1| sensory response regulator with diguanylate cyclase domain
           [Candidatus Nitrospira defluvii]
 gi|300605899|emb|CBK42232.1| Sensory response regulator with diguanylate cyclase domain
           [Candidatus Nitrospira defluvii]
          Length = 708

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 53/202 (26%), Positives = 86/202 (42%), Gaps = 23/202 (11%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           +   + E   +   I QL+  D L+GL N   F   L         Y++ L+ +F D+D 
Sbjct: 246 TAQDITERKQAERAIHQLAYYDSLTGLANRVLFKDRLSNALSYAERYHQHLATLFIDLDR 305

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV------------GRLGGEEFAAAALG 186
           FK IND  GH VGD+++  ++++L         V             RLGG+EF      
Sbjct: 306 FKIINDTLGHTVGDRLLTHVAERLSESVRQSDSVGRHADHEPTHALARLGGDEFTILLTA 365

Query: 187 -SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
             + ++A  +A  + + +         G  I I+ S GI+        +  ++  AD A+
Sbjct: 366 LPTPEDAGRVARRILEALA--HPFSIDGHEIFISASIGISIFPSDGATVEALLKNADTAM 423

Query: 245 YVAKKSGRNRVVCFSDIENNTC 266
           Y AK+ GRN    +S   N   
Sbjct: 424 YHAKEQGRNNCQFYSSGLNAAA 445


>gi|288939917|ref|YP_003442157.1| PAS/PAC sensor-containing diguanylate cyclase [Allochromatium
           vinosum DSM 180]
 gi|288895289|gb|ADC61125.1| diguanylate cyclase with PAS/PAC sensor [Allochromatium vinosum DSM
           180]
          Length = 434

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 10/181 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFK 140
             + +       + QL+R+D L+ L N   F             Y+  +++   DID+FK
Sbjct: 245 RDITDSKRLEEDLRQLTRLDPLTQLFNRRYFFTLAEQEYQRFLRYHHPMALCMIDIDHFK 304

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GH VGD V+  ++  L         + R GGEEF      +  Q A      LR
Sbjct: 305 SVNDRYGHLVGDTVLCIVAQTLHDNLRQVDILARYGGEEFVILLPETDLQTACASTERLR 364

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   +I   SGP + +T+S G+          +  ++  ADQ LY AK++GRNRV  +
Sbjct: 365 VAVAERRIETPSGP-VSVTLSLGVVAIADGPAMTLERLLDAADQMLYRAKQAGRNRVEIW 423

Query: 259 S 259
            
Sbjct: 424 D 424


>gi|146337355|ref|YP_001202403.1| GGDEF domain-containing protein [Bradyrhizobium sp. ORS278]
 gi|146190161|emb|CAL74153.1| putative diguanylate cyclase (GGDEF)domain [Bradyrhizobium sp.
           ORS278]
          Length = 328

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 69/212 (32%), Positives = 105/212 (49%), Gaps = 15/212 (7%)

Query: 64  ILVENL-SLVIISITISLLLGYISGSILKEL---FISYNRISQLSRIDCLSGLLNHSAFI 119
           IL+ENL S +  +   +  L        +EL     S N+  Q +R D L+GL N  A  
Sbjct: 111 ILIENLVSELAQATARAAKLEASFAEKSRELDTIRDSLNKSEQRARTDTLTGLPNRRALE 170

Query: 120 S-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
                        +E LSI+  D+D+FK+ NDN+GH VGD+V+  ++  L          
Sbjct: 171 EFFRHAQIEAMERDEPLSILLIDVDHFKKFNDNYGHGVGDQVLRLVAKALRERVREKDLP 230

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAERCHK 230
            R GGEE  A    +  +    +A  +R+ I + Q    S   +   IT+S G+ +    
Sbjct: 231 ARYGGEELIAVLPETDLEGCTGMAERIRRTIADCQFTRRSTGEVLPQITVSIGVGQFQFG 290

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           E ++ +I R D+ALY+AKK GRNRVV  +++E
Sbjct: 291 ESMADLIDRCDRALYLAKKLGRNRVV--TELE 320


>gi|145298909|ref|YP_001141750.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851681|gb|ABO90002.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 432

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 8/177 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
             + E       +   +  D L+G+ N   F             +   +S++  DID+FK
Sbjct: 249 RDISERARLVEELKVAATTDPLTGIANRRRFDELVKQEVQRCQRFGHTMSLLLLDIDHFK 308

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND  GH  GD+ I  L  ++         +GR GGEEF      +S   A   A  +R
Sbjct: 309 QVNDTHGHQQGDQAILSLVRRIAKQLREVDILGRWGGEEFIILLPETSLDLAWASAERIR 368

Query: 201 KIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I +    + +   I +T+S GI A +  ++ +  ++ RAD ALY+AKK GRN  +
Sbjct: 369 LAIASESHPLGADIEIPLTVSIGISASQGPQDNVDNMVRRADTALYLAKKQGRNCCI 425


>gi|302342228|ref|YP_003806757.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfarculus baarsii DSM 2075]
 gi|301638841|gb|ADK84163.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfarculus baarsii DSM 2075]
          Length = 966

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 11/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E   +  RI+  +  D L+GL N   F   L             L+++F D+D FK 
Sbjct: 522 DITEAKRNEERITHQAYHDALTGLPNRQLFNDRLAMAIAQAHRGGHGLALLFLDLDNFKN 581

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH VGD ++  ++ +L         V RLGG+EF     G+S+ +   +    R+
Sbjct: 582 INDSLGHAVGDMLLQAVAQRLTRWLREEDTVARLGGDEFVMLIQGASDPD--YIMQVARR 639

Query: 202 IIENSQINISSGP-SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           I+++     + GP  +++T S G+    H      T++  AD A++ AK  GRN +  F+
Sbjct: 640 ILDSMSQPFAVGPHELYVTASIGVTIHPHDGHDAQTLVANADLAMFRAKDEGRNNIKLFT 699

Query: 260 DIEN 263
              N
Sbjct: 700 PAMN 703


>gi|114775642|ref|ZP_01451210.1| sensory transduction system regulatory protein [Mariprofundus
           ferrooxydans PV-1]
 gi|114553753|gb|EAU56134.1| sensory transduction system regulatory protein [Mariprofundus
           ferrooxydans PV-1]
          Length = 432

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 103/231 (44%), Gaps = 26/231 (11%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
           +  +++ +   ++ +GL+   G+ Y    N ++V   +            ++ EL    +
Sbjct: 215 VTVLLWKSYGLIWLVGLS---GIVYAFRHNRAIVSERL-----------KLISELQEMND 260

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPV 150
           ++ + S  D L+ + N   F + L             +L++V  DIDYFK  ND +GH  
Sbjct: 261 KLERYSYQDGLTRVANRRMFDTLLDREWAAARRGGGRQLALVMIDIDYFKLYNDTYGHLA 320

Query: 151 GDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD  +  ++  L  V   T   + R GGEEF      +  ++A  LA    + I   QI 
Sbjct: 321 GDDCLKRIAAALSRVSKRTTDLIARYGGEEFVLLLPNTGREQAHSLAEQCLRDIAALQIP 380

Query: 210 ISSGPSIH-ITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257
            S   +   +TIS G+        +    +I  AD+ALY AK+SGRNRV  
Sbjct: 381 HSQSEAAEVVTISVGVTTMAPDATMQAAMLIEMADRALYRAKESGRNRVEV 431


>gi|296388643|ref|ZP_06878118.1| hypothetical protein PaerPAb_10848 [Pseudomonas aeruginosa PAb1]
          Length = 525

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 8/174 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            +         +  L+  D L+GL N  +F+            +      +  DID+FK 
Sbjct: 346 DISRRKAMEQELRLLASTDTLTGLHNRHSFLHQAELMLKAAERFRHPCVALMLDIDHFKN 405

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD+ +  +++ L         +GRLGGEEFAA        +A  +A  LR 
Sbjct: 406 INDSHGHLTGDRALQRVAETLRQGLREVDLLGRLGGEEFAALLPEIGLDQALDVAERLRA 465

Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
            +E  +++   G  + +T+S G+A R    + + +++ RAD ALY AK  GRNR
Sbjct: 466 GVEALRVSNPDGEPLRMTVSIGVALRRDAGDDLESLLVRADSALYQAKSGGRNR 519


>gi|118581894|ref|YP_903144.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pelobacter propionicus DSM 2379]
 gi|118504604|gb|ABL01087.1| diguanylate cyclase/phosphodiesterase [Pelobacter propionicus DSM
           2379]
          Length = 729

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + E   S  +I  ++  D L+ L N   F+  L             L+++F D+D FK 
Sbjct: 287 DITERRKSEQQIQHMAYFDSLTDLPNRVLFLDRLRQAIAHALRDENSLAVLFLDLDRFKD 346

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLR 200
           IND  GH  GD+++  ++ +L     +   + RLGG+EF        ++  A  +A DL 
Sbjct: 347 INDTLGHSAGDQLLIQVTRRLGRQIRSCDTLARLGGDEFVVIVTDLGKKMNATRVAQDLI 406

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I+     + +G  +H+T S GIA          T++  AD A+Y +K+SGRNR   +S
Sbjct: 407 NAIQ--PPFLIAGRELHVTTSIGIALFPDDGNNAETLVKHADLAMYSSKESGRNRYNFYS 464

Query: 260 DIENNTC 266
              N   
Sbjct: 465 ASMNQKA 471


>gi|86361147|ref|YP_473034.1| hypothetical protein RHE_PF00417 [Rhizobium etli CFN 42]
 gi|86285249|gb|ABC94307.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 637

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 89/196 (45%), Gaps = 13/196 (6%)

Query: 77  TISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NE 127
           T   ++  I+ +   E  L +S  ++  L+  D L+G++N  AF  +           N 
Sbjct: 431 TAMAVVSDITATKQAEIALRLSAEQLKNLAETDGLTGIVNRRAFDEAFARETAGSARKNT 490

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALG 186
             S++  DID FK  ND +GHP GD+ +  +S  L   V      V R GGEEFA     
Sbjct: 491 PFSLLMVDIDRFKAYNDTYGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFAVFLPD 550

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK---EPISTIIYRADQA 243
           +S + A I+A    + +    I  S      +T S GI+           + ++  AD A
Sbjct: 551 TSAKGAMIVAEQFARRLAQENIVHSGSEFGRVTASIGISCATGATLRTSPNRLLAEADAA 610

Query: 244 LYVAKKSGRNRVVCFS 259
           LY AK  GRNR++  S
Sbjct: 611 LYEAKTQGRNRILAHS 626


>gi|56697678|ref|YP_168048.1| GGDEF domain-containing protein [Ruegeria pomeroyi DSS-3]
 gi|56679415|gb|AAV96081.1| GGDEF domain protein [Ruegeria pomeroyi DSS-3]
          Length = 249

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 2/187 (1%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI 131
           +I+ + ++ L  +     L E+     +++ L+RID ++ L N +  +  L    E+  +
Sbjct: 44  IIVPLLVAPLATHWGAERLLEIDKLNQQLAHLNRIDQMTQLYNRACLLEKLEQEPEEAGM 103

Query: 132 VFF-DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +   DID+FKQIND +GH VGD VI  ++  L           R GGEEF         +
Sbjct: 104 ILIADIDHFKQINDTYGHDVGDLVIIEVARVLQRSSLPEGIAARFGGEEFVIYVPRLDLE 163

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
            A   A  +R+ +E   + I  G  +  TIS GI  R  +E +  ++ RAD+ALY AK  
Sbjct: 164 AAEFRAEAIRQAVEAQSVMI-DGRKLSCTISIGIEIRQMQENVGDVLKRADEALYRAKAQ 222

Query: 251 GRNRVVC 257
           GRN+VV 
Sbjct: 223 GRNQVVA 229


>gi|330000912|ref|ZP_08303856.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
 gi|328537844|gb|EGF64036.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
          Length = 559

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 53/199 (26%), Positives = 101/199 (50%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+ +  T+ LLL + +   +++ + +    +   +  D L+ LLN  A          
Sbjct: 357 LTLMWVLFTLMLLLSWLVIRRMVRNMSVLQTSLEWQAWHDALTRLLNRGALFEQAMAVAS 416

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   L+++  D+D+FK IND +GH  GD+V++ ++  L         +GR+GGEEF
Sbjct: 417 DCQRSGRPLAVIQLDLDHFKHINDRYGHQAGDRVLSMVASTLSSAVRQGDLLGRVGGEEF 476

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIY 238
                 ++ QEAA +A  LR+ I+  ++ + +  ++ ++ S G++    +       +  
Sbjct: 477 CIVMPNTTLQEAAAVAERLRQRIQGREVFLHNNVTLRVSASLGVSASEERGEYQFEALQS 536

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD  LY+AK++GRN+V  
Sbjct: 537 VADGRLYLAKQNGRNQVCF 555


>gi|320105448|ref|YP_004181038.1| diguanylate cyclase with beta propeller sensor [Terriglobus saanensis
            SP1PR4]
 gi|319923969|gb|ADV81044.1| diguanylate cyclase with beta propeller sensor [Terriglobus saanensis
            SP1PR4]
          Length = 1050

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 14/220 (6%)

Query: 51   FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK------ELFISYNRISQLS 104
            F + L  F  L   L+  +   ++      L   I+   L+      +L ++ + ++QL+
Sbjct: 820  FRMLLVLFACLVIYLLVRVRTAVLERRRQQLEAEIAQRTLELNDQRDKLQVANSLLNQLA 879

Query: 105  RIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
              D L+ L N   FI+ L           +  S++  DID+FK +ND +GH  GD VI  
Sbjct: 880  SRDSLTNLFNRRHFIALLDTELARSKRTAQTFSLLLLDIDHFKSVNDTYGHLAGDTVIQT 939

Query: 158  LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            ++ ++         + R GGEE+      ++  +A  LA  +   I ++ I I  G  I+
Sbjct: 940  IAARISTSLRATDTLARFGGEEYIVLLPNTAVPQATALALRILSAIASTPIEI-EGFLIN 998

Query: 218  ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             ++S G AE   K   + ++ RAD ALY AK+ GRN +  
Sbjct: 999  ASVSIGCAEADIKGTTTMLLERADLALYAAKRGGRNCLRV 1038


>gi|218440066|ref|YP_002378395.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7424]
 gi|218172794|gb|ACK71527.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7424]
          Length = 712

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 77/187 (41%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + E   +  ++   +  D L+GL N   F   L             L+I+F D+D FK 
Sbjct: 260 DITERKRTEQKLKYQAFHDVLTGLPNRIWFNQQLIAALNNAKRQETPLAILFLDLDGFKN 319

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLR 200
           IND  GH  GD+V+     +L+        V R GG+EF       S  +++  LA  + 
Sbjct: 320 INDTLGHTFGDQVLQKFGKRLLGSVRAGDTVCRWGGDEFVVLLPYISHTEDSIKLAQRIL 379

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++      I      +I  S GI+      E   T++  AD ALY AK+ GRN    +S
Sbjct: 380 DVL-KHPFEIQK-QQFYIKTSMGISIYPQDGEDGETLLKNADAALYRAKERGRNHFQFYS 437

Query: 260 DIENNTC 266
                  
Sbjct: 438 TTMTTKA 444


>gi|332306985|ref|YP_004434836.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174314|gb|AEE23568.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 370

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 111/240 (46%), Gaps = 20/240 (8%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           +I   IF  + I  + F  N  LF          EY       L+   IT+S+L  +   
Sbjct: 139 LIQLGIFALVVILILEFPNNGLLFA---------EYSYEFRSRLIYSFITVSMLFVFYEY 189

Query: 88  SILKELFISYN---RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           S  +          +  Q +RID LSGL N    +  L         +++ ++++  DID
Sbjct: 190 SRQRSFKTQQELSKKFEQQARIDSLSGLQNRRGMLEKLEYEHQRTLRHSKNMTLMMCDID 249

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FKQ+ND +GH VGD VI  +             V R GGEEF      +S+Q+A +LA 
Sbjct: 250 HFKQVNDKYGHDVGDIVIKQVGQMFANGLRKQDTVARWGGEEFLFMLPETSQQQAFVLAE 309

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            LRK IE+ +  + S   + +T+S GI +   ++ +   I RAD  LY AK  GRN  V 
Sbjct: 310 KLRKKIESYEQKVDSTH-LSVTVSIGIYQMHPQDRLDHAISRADTNLYRAKTHGRNCTVV 368


>gi|304412197|ref|ZP_07393806.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS183]
 gi|307306941|ref|ZP_07586681.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica BA175]
 gi|304349463|gb|EFM13872.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS183]
 gi|306910519|gb|EFN40949.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica BA175]
          Length = 1508

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 11/186 (5%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            + + +   +   +  L+  D L+GL N + F   L          N  ++++F D+D FK
Sbjct: 1062 TDITQRKKAEEDLRFLASFDTLTGLPNRTLFQDRLNHAITQAHRANNIVALLFLDLDRFK 1121

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDL 199
             IND+ GH VGD ++  ++ +L         V RLGG+EF     G ++ +AA +++  +
Sbjct: 1122 HINDSMGHHVGDLLLKAVARRLQNAVRDGDTVARLGGDEFTIILEGVAKTKAATLISEKV 1181

Query: 200  RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             +  +     +    ++ I+ S GI+   +  +   ++I  AD A+Y AK SGRN    +
Sbjct: 1182 LRAFQT--PFLLDDKTLTISTSIGISLYPNDADNADSLIKFADTAMYHAKSSGRNNFQFY 1239

Query: 259  SDIENN 264
            +   N 
Sbjct: 1240 TSKLNE 1245


>gi|291569888|dbj|BAI92160.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 990

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 53/212 (25%), Positives = 97/212 (45%), Gaps = 11/212 (5%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           EYI +E L+ VI+     +     +   + +   +  ++   +  D L+GL N +  ++ 
Sbjct: 506 EYIWLETLTKVILDNQGEVRHLQSASRDVSDRIKAEEQLKYDALHDSLTGLPNRTHLMAQ 565

Query: 122 L--------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           L         + N +L+I+F D+D FK +ND+ GH +GDK+++ ++  +         + 
Sbjct: 566 LDMALKRAQNNENLQLAILFLDLDNFKVVNDSLGHLIGDKMLSLVAKIIKNFVRDTDLLA 625

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KE 231
            LGG+EF           EA  +A  + + +  S + I     + +  S GI  R +  E
Sbjct: 626 HLGGDEFVIVLEYLEVIHEAIRVAERILESLRTSPLQIGE-REVFVNSSIGIVARTNRHE 684

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
               ++  AD A+Y AK  GR R   F  + +
Sbjct: 685 KAEDLLRDADLAMYRAKHEGRGRYAIFDPLMH 716


>gi|222112638|ref|YP_002554902.1| diguanylate cyclase [Acidovorax ebreus TPSY]
 gi|221732082|gb|ACM34902.1| diguanylate cyclase [Acidovorax ebreus TPSY]
          Length = 342

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 104/238 (43%), Gaps = 13/238 (5%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS 88
           +Y  + F    A V +    +L      P     Y+++  +++V+ S T      + + +
Sbjct: 103 LYGLVAFGAAGAVVQWWHPAWLSPDSQPPALSAAYLVM--IAVVLASSTFLTTRVHSARA 160

Query: 89  ILK----ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDID 137
            L+    EL  +  +I +L+  D L+GL N    +              + L +   D+D
Sbjct: 161 RLRSQKRELAAAVEQIRELAIRDELTGLPNRRCMLEMMRLEHARAQRSRQPLLLAQLDLD 220

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK +ND  GH  GD  +   +  +         + R GGEEF      +   +   L  
Sbjct: 221 HFKAVNDTHGHAAGDVALQSFAQTVHGCVRASDLLARWGGEEFLLLMANTHPADGTRLLE 280

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +R  +  + + +  G  + +T+S G+AE    E  + ++ RAD ALY AK+ GRNRV
Sbjct: 281 RVRATVAATPVALPGGTQLSLTVSVGLAELAPGESTAALLQRADAALYGAKRLGRNRV 338


>gi|170736935|ref|YP_001778195.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3]
 gi|169819123|gb|ACA93705.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3]
          Length = 521

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 15/210 (7%)

Query: 63  YILVENLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSA 117
           Y    + ++ I S  + L +G++  S+L     ++   +   +  L+R D L+GL N   
Sbjct: 298 YAAWYDRAIPIGSAMVLLAIGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRM 357

Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
              +L     +       LS++F D+DYFK  ND  GH  GD  +A +   +      P 
Sbjct: 358 LDVTLAREWRRAARSQHALSLLFIDVDYFKHYNDTQGHQAGDDALAAVGHCIAGCLRRPA 417

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AER 227
            +  R GGEEF           A  +A  +R  I +  I   +G    +T+S G+  +  
Sbjct: 418 DYAARYGGEEFVVVLPDIDTDGAVTIAETIRTGILDLGIRHDAGTVGRLTVSIGVTTSYP 477

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              + I   +  AD+ALY AK+ GRNR+V 
Sbjct: 478 ERDDNIQAALKLADEALYRAKEGGRNRIVV 507


>gi|34496829|ref|NP_901044.1| hypothetical protein CV_1374 [Chromobacterium violaceum ATCC 12472]
 gi|34102684|gb|AAQ59049.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 842

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 56/213 (26%), Positives = 98/213 (46%), Gaps = 12/213 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +  E+LS+  I       L Y++  S + +   +  R+  L+  D L+ L N + F+  L
Sbjct: 370 LYTEHLSITAIRDAAGECLHYVAVFSDITQRKQAEERLHFLANHDALTSLPNRTLFLEKL 429

Query: 123 GSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                      ++L+++F D+D FK +ND  GH  GD+++  ++ QL         V RL
Sbjct: 430 QGAVERAGLGGQRLALLFIDLDRFKLVNDTLGHYAGDQLLIHIARQLQSRLLPGETVARL 489

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF     G   E + A  A  +   I  ++++  +G  + I+ S GI+         
Sbjct: 490 GGDEFTLLLEGVGGEAQVAARAQAMLDAI--TELSGVAGQQMFISASIGISMFPLDGRDA 547

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            T++  AD A+Y AK  G+N    ++   N   
Sbjct: 548 DTLLVHADTAMYRAKDGGKNGFQFYTPDMNARA 580


>gi|299530167|ref|ZP_07043593.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           S44]
 gi|298721824|gb|EFI62755.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           S44]
          Length = 306

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 65/262 (24%), Positives = 109/262 (41%), Gaps = 25/262 (9%)

Query: 21  SFSPHTFMIYFSI--FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITI 78
           +F     ++ FS   F +    +     +  L  I L  ++    + +   +L+   +T+
Sbjct: 44  AFQALVMLLVFSTDGFLAPRRTSFWMTWSCTLIAIALAVYWAGPQMRMTTDTLIGQFLTV 103

Query: 79  SLLLGYISG-SIL---------------KELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
            ++LG +   S+L               ++L ++  +I  L R D L+GL N    +  L
Sbjct: 104 GVMLGAVVRCSVLVTYFRGMQYRLSASNEKLALALKQIENLVRNDDLTGLANRRGVMDRL 163

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     +    I   DID+FKQ+ND +GH  GD+V+      L          GR 
Sbjct: 164 QQCIHAAQRRDAPFCIALLDIDFFKQVNDRYGHEGGDQVLRAFGQLLSSQIRATDCAGRY 223

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           GGEEF      +   +A +L   +R+  E           + +T + G+ +    E    
Sbjct: 224 GGEEFLLVLCDTPLAQAGVLLERIRESTEALPWTQLVHKDLRVTCTLGVTQYRQGETAEA 283

Query: 236 IIYRADQALYVAKKSGRNRVVC 257
           +I RAD A+Y  K +GRNRVV 
Sbjct: 284 LISRADAAMYRGKAAGRNRVVL 305


>gi|53802317|ref|YP_112991.1| CBS/GGDEF/EAL domain-containing protein [Methylococcus capsulatus
           str. Bath]
 gi|53756078|gb|AAU90369.1| CBS/GGDEF/EAL domain protein [Methylococcus capsulatus str. Bath]
          Length = 594

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 87/197 (44%), Gaps = 13/197 (6%)

Query: 80  LLLGYISGSILKELF--ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLS 130
           L LG  SG  L E       N +  L+  D L+ L N       L            +++
Sbjct: 140 LYLGIGSGHDLFEEVANRKQNHLYHLAHYDPLTSLPNRLLLNDRLKRACLRGQRGGYRIA 199

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSE 189
           ++F D+D FK +ND  GH  GD+++  ++ +          V RLGG+EF          
Sbjct: 200 LLFIDLDRFKLVNDTLGHAAGDQLLQGVAGRFAACVRKVDTVARLGGDEFTVLLEPVQGP 259

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAK 248
            EA  +A  L + +E  +  +     I  + S G+     H   +  ++ +AD A+Y AK
Sbjct: 260 DEALAVAAKLAQSLE--RPFLIQNHEITTSASIGVVLFPEHDATVEGLMRKADAAMYCAK 317

Query: 249 KSGRNRVVCFSDIENNT 265
           + GRNR   F++  N+T
Sbjct: 318 REGRNRFALFTEEMNST 334


>gi|167625007|ref|YP_001675301.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella halifaxensis HAW-EB4]
 gi|167355029|gb|ABZ77642.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella halifaxensis HAW-EB4]
          Length = 1017

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S + E   +   I + +  D L+GL N    +  L +         +  +I+F D+DYFK
Sbjct: 565 SDITEKKQAEQIIWKQANYDPLTGLPNRRMLLDYLSAEILKSDCREQHFAIMFIDLDYFK 624

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           ++ND  GH +GD +++  + +L         V RLGG+EF       +  +    +A  +
Sbjct: 625 EVNDTLGHDMGDMLLSEAAKRLKACIRDTDVVARLGGDEFTVVLPNITDIKGVDNVAKHI 684

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
              I     N+    + +I+ S GI         I  ++  ADQA+Y AK  GRNR   F
Sbjct: 685 LARIAE-PFNLGE-ETAYISASIGITLYPDDASTIEGLLKHADQAMYAAKDEGRNRFHYF 742

Query: 259 SDIENNTC 266
           +       
Sbjct: 743 TASMQRYA 750


>gi|161521079|ref|YP_001584506.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia multivorans ATCC 17616]
 gi|189352743|ref|YP_001948370.1| PleD-related family two-component system response regulator
           [Burkholderia multivorans ATCC 17616]
 gi|160345129|gb|ABX18214.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia multivorans ATCC 17616]
 gi|189336765|dbj|BAG45834.1| PleD-related family two-component system response regulator
           [Burkholderia multivorans ATCC 17616]
          Length = 345

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 10/177 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+GL N       L +   +       LS++  D+D+FK  N
Sbjct: 162 QQLLEANLELRRLMHSDGLTGLSNRRYLDEYLAAEWRRGTRERAELSLLMIDVDHFKLYN 221

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+V+  ++  +      +     R GGEEFA    G+S   A +L   +R  
Sbjct: 222 DTYGHVAGDQVLRQVAATIAQCLRPSGDLAARFGGEEFAVVMPGTSAGAARLLGEKIRLA 281

Query: 203 IENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++  ++      + H+T+S G A        P + +I  AD+ALY AK  GRNRV  
Sbjct: 282 VDALRLEHGQSTAGHVTVSIGGASIVPAPGLPTTALIEAADRALYRAKHDGRNRVEV 338


>gi|152984254|ref|YP_001348582.1| sensory box-containing diguanylate cyclase [Pseudomonas aeruginosa
           PA7]
 gi|150959412|gb|ABR81437.1| sensory box-containing diguanylate cyclase [Pseudomonas aeruginosa
           PA7]
          Length = 858

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 10/184 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQ 141
           + + +   ++ +I  LS+ D L+GL N +     L            L+++  D+D FK 
Sbjct: 409 ADITDEVEAHAKIQHLSQHDALTGLPNRNKLFGFLERQLAEKAGKSPLAVLMLDLDRFKP 468

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           IND +GHP GD V+  ++++L         V RLGG+EF   ++  +S  E       L 
Sbjct: 469 INDQYGHPAGDAVLHAIAERLRASTRDLDMVARLGGDEFVVVSVHVTSRLEVEKFCIRLI 528

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++I    ++       H+  S G+A    H +    ++  AD A+Y AK +GRN    +S
Sbjct: 529 EVINREILH--DEQVFHVGASIGVALASEHGDDPRALLRCADVAMYEAKAAGRNTWRFYS 586

Query: 260 DIEN 263
           +  +
Sbjct: 587 EAMD 590


>gi|332140102|ref|YP_004425840.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|332143100|ref|YP_004428838.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550124|gb|AEA96842.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327553122|gb|AEA99840.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 325

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 11/192 (5%)

Query: 78  ISLLLGYISGSILKELFISY--NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
             +L+  ++   L +L + +    +   SR+D L+GL N   +              ++ 
Sbjct: 131 FCMLVYDVTEQALGKLGMEHLNQELKTASRVDGLTGLFNRRYWQERFDEMYKLCVRRDKP 190

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            + V  DID+FK+IND +GH  GDKVI  L+  +          GR GGEEFA     S+
Sbjct: 191 STAVMLDIDHFKRINDTYGHQAGDKVIKMLAALIKRCVRETDLAGRYGGEEFAIILNDST 250

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247
            ++A I+A  +R++ +   +    G SI+ T+S G+A+ C   +     +  AD+ALY A
Sbjct: 251 VEDARIVAERIRQLAQRLVVEH-EGESINFTVSLGLAQFCSAFKGPLAWLECADKALYDA 309

Query: 248 KKSGRNRVVCFS 259
           K+SGRN+   + 
Sbjct: 310 KESGRNQYRVYD 321


>gi|325982688|ref|YP_004295090.1| diguanylate cyclase/phosphodiesterase [Nitrosomonas sp. AL212]
 gi|325532207|gb|ADZ26928.1| diguanylate cyclase/phosphodiesterase [Nitrosomonas sp. AL212]
          Length = 891

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 11/182 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNF 146
             +  RI +++  D L+GL N       +            +++++F D+D+FK IND+ 
Sbjct: 442 KEAEKRIIEMATHDALTGLPNRYLLRDRIEQVLVHDTRLQRQMAVLFIDLDHFKTINDSL 501

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIEN 205
           GH +GD ++  ++D+L         V R GG+EF       +E  +AA +A  +      
Sbjct: 502 GHEIGDLLLKAVADRLKSCVRNEDTVARQGGDEFIVVLNSIAESLDAAKVAQKILDSFA- 560

Query: 206 SQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
              +I     +HI  S GIA          T++  +D A+Y AKK+GRN    F+D  N 
Sbjct: 561 LPFHIHKN-ELHIDGSIGIAVFPDDGVNAETLLKNSDVAMYHAKKNGRNNYQFFTDELNK 619

Query: 265 TC 266
           + 
Sbjct: 620 SA 621


>gi|126176238|ref|YP_001052387.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella baltica OS155]
 gi|125999443|gb|ABN63518.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS155]
          Length = 1508

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 11/186 (5%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            + + +   +   +  L+  D L+GL N + F   L          N  ++++F D+D FK
Sbjct: 1062 TDITQRKKAEEDLRFLASFDTLTGLPNRTLFQDRLNHAITQAHRANNIVALLFLDLDRFK 1121

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDL 199
             IND+ GH VGD ++  ++ +L         V RLGG+EF     G ++ +AA +++  +
Sbjct: 1122 HINDSMGHHVGDLLLKAVARRLQNAVRDGDTVARLGGDEFTIILEGVAKTKAATLISEKV 1181

Query: 200  RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             +  +     +    ++ I+ S GI+   +  +   ++I  AD A+Y AK SGRN    +
Sbjct: 1182 LRAFQT--PFLLDDKTLTISTSIGISLYPNDADNADSLIKFADTAMYHAKSSGRNNFQFY 1239

Query: 259  SDIENN 264
            +   N 
Sbjct: 1240 TSKLNE 1245


>gi|323698965|ref|ZP_08110877.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfovibrio sp.
           ND132]
 gi|323458897|gb|EGB14762.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfovibrio
           desulfuricans ND132]
          Length = 780

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 64/177 (36%), Positives = 88/177 (49%), Gaps = 9/177 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + E     + +  L+  D L+G  N   F+S L         YN  L ++  DID+FK+
Sbjct: 604 DVTEQRKMEDELRTLASTDPLTGASNRRQFMSRLSEEFERCKRYNTSLVLLSLDIDHFKR 663

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGHP GD V+  L         T    GR+GGEEF AA   +        A  LR+
Sbjct: 664 INDTFGHPAGDDVLKELVALCRSTLRTTDLFGRVGGEEFQAALTQTRIGAGENTAERLRR 723

Query: 202 IIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +E  ++    G +I  TIS G+ A R     I  ++ RAD ALY AK++GRNRV+ 
Sbjct: 724 RVERCEVKTH-GETITFTISIGVTALRPEDGSIEGLLKRADDALYQAKRNGRNRVMV 779


>gi|311696602|gb|ADP99475.1| sensory box/GGDEF/GAF/EAL domain protein [marine bacterium HP15]
          Length = 449

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 81/178 (45%), Gaps = 8/178 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            +         + Q S  D L+G  N   F          L       ++V FD D+FK+
Sbjct: 266 DITSQKTLEEELRQTSTTDDLTGAANRRRFTEVLSWEFERLKRNGAGYAVVLFDFDWFKR 325

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND++GH VGD V+   + ++     T   +GR+GGEEFA       E  A   A  LR+
Sbjct: 326 VNDHYGHHVGDLVLRETAHRIKNELRTGDTLGRIGGEEFAVLLPQCDENSARQFAERLRR 385

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +E  +          IT    I++R   E  S I+ RADQA+Y  K  GRN+VV F 
Sbjct: 386 SVEQLRFIGFDELRGTITCGVAISDRT-DEKPSQILVRADQAMYRGKAQGRNQVVVFD 442


>gi|206579932|ref|YP_002240580.1| membrane-associated diguanylate cyclase [Klebsiella pneumoniae 342]
 gi|288937275|ref|YP_003441334.1| diguanylate cyclase [Klebsiella variicola At-22]
 gi|290512679|ref|ZP_06552045.1| membrane-associated diguanylate cyclase [Klebsiella sp. 1_1_55]
 gi|206568990|gb|ACI10766.1| membrane-associated diguanylate cyclase [Klebsiella pneumoniae 342]
 gi|288891984|gb|ADC60302.1| diguanylate cyclase [Klebsiella variicola At-22]
 gi|289775020|gb|EFD83022.1| membrane-associated diguanylate cyclase [Klebsiella sp. 1_1_55]
          Length = 348

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 121/267 (45%), Gaps = 22/267 (8%)

Query: 8   FLSIWLCH--EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYIL 65
           F  +W  H   K +    PH   +  ++   +FI T+ F  NI  F +   P + +  I+
Sbjct: 78  FGMLWAWHVVAKAMLLTPPHFNYLVIALLSILFIGTIAFSNNITAFTLHSLPTFLICLIM 137

Query: 66  VEN---------LSLVIISITISLLLG----YISGSILKELFISYNRISQLSRIDCLSGL 112
            E            L I  IT+  ++       +  ++ +L    N ++ LS +D L+GL
Sbjct: 138 SEGEQWLRMTYCFVLPIAGITLQNIIQKRNDAFTQGLMDKLMQERNTLNDLSMLDPLTGL 197

Query: 113 LNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +      +   ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 198 YNRRGLQNRLDTLLALDGDNHFVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRNAVRS 257

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      SSE+ A   A  +R+ + + +I      S+  ++TIS G+  
Sbjct: 258 RDIVARFGGEEFMVLLTNSSEETAWQAAERIRQRVYDLKIPHMFNESVATNVTISIGLTP 317

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRN 253
               + I   + RAD ALY AK  GRN
Sbjct: 318 LI-DDNIEQALARADGALYEAKNKGRN 343


>gi|331015155|gb|EGH95211.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 425

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 91/178 (51%), Gaps = 11/178 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
              +        ++ +++  D L+GL N  A   +L           +  S +  DID+F
Sbjct: 244 SQDVTTRLGREQKLLEIAHSDTLTGLDNRRAAEHTLERMINTARIAGKPFSFIICDIDHF 303

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND++GHP GD V+  ++  L           R GGEEF      SS ++AA LA  +
Sbjct: 304 KSVNDHYGHPAGDSVLKSVAAILKHRIRAFDVAARWGGEEFLILVPDSSLKQAAELAERV 363

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           RK +E+ +I   +GP   +TIS G+AE    E  +++I RAD+ LY AK+ GRNRV  
Sbjct: 364 RKGVESLEIP-EAGP---VTISLGVAELSPGETAASLIQRADKVLYQAKRLGRNRVEI 417


>gi|206564659|ref|YP_002235422.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
 gi|198040699|emb|CAR56685.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
          Length = 521

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 58/210 (27%), Positives = 95/210 (45%), Gaps = 15/210 (7%)

Query: 63  YILVENLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSA 117
           Y    + ++ I S  + L +G++  S+L     ++   +   +  L+R D L+GL N   
Sbjct: 298 YAAWYDRAIPIGSAMVVLAIGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRM 357

Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
              +L     +       LS++F D+DYFK+ ND  GH  GD  +A +   +      P 
Sbjct: 358 LDVTLAREWRRAARSQHALSLLFIDVDYFKRYNDTQGHQAGDDALAAVGHCIAGCLRRPA 417

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AER 227
            +  R GGEEF           A  +A  +R  + +  I   +G    +T+S G+  +  
Sbjct: 418 DYAARYGGEEFVVVLPDIDSDGAVTIAETIRTGVLDLGIRHDAGTVGRLTVSIGVTTSYP 477

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              + I   +  AD ALY AK+ GRNR+V 
Sbjct: 478 ERDDNIQAALKLADDALYRAKEGGRNRIVV 507


>gi|170727262|ref|YP_001761288.1| sensor diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169812609|gb|ACA87193.1| 7TM domain sensor diguanylate cyclase [Shewanella woodyi ATCC
           51908]
          Length = 623

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 68/173 (39%), Positives = 94/173 (54%), Gaps = 9/173 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEK----LSIVFFDIDYFKQI 142
           K+L  +  +    +R+D L+GL N  AFI S    L   N +    L ++  DID+FK+I
Sbjct: 439 KQLLEAKEKAETEARVDILTGLTNRRAFIESAHGFLARANRQPETHLYLLMIDIDHFKKI 498

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  +++ L     T   V RLGGEEFAA       Q A  L+  LRK 
Sbjct: 499 NDTYGHSAGDAALVAVANSLSETIRTIDVVSRLGGEEFAALMENKDPQGAINLSERLRKA 558

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           IE   I    G  I +T S GIA+    + + T++ +AD+ALY AK+SGRN V
Sbjct: 559 IEELVIEH-EGQQIKLTTSIGIAKWGPMDNLDTLMNQADRALYQAKESGRNCV 610


>gi|46202109|ref|ZP_00053748.2| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 425

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 13/185 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
             + E   +  RI +L+  D L+GL N +     +         +  ++++++ D+D FK
Sbjct: 230 RDISERKENEERIKRLAHHDTLTGLPNRNLLNDRISHALARVRRHGGRMAVLYVDLDKFK 289

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
            IND  GH  GD V+  ++ +L     +   V R+GG+EF           EAA +A   
Sbjct: 290 PINDTLGHEAGDAVLREVAQRLDHCVRSSDTVSRVGGDEFVVVVEEIGRPGEAAQVA--- 346

Query: 200 RKIIENSQINIS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           RKI+E     I+    +  +  S GIA        +  +   AD A+Y  K SGRN    
Sbjct: 347 RKILEALGTPIAYENHACQVGASIGIAVFPDDGNTMEEVSKAADVAMYRVKHSGRNGYCF 406

Query: 258 FSDIE 262
           +SD  
Sbjct: 407 YSDSM 411


>gi|315127811|ref|YP_004069814.1| hypothetical protein PSM_A2750 [Pseudoalteromonas sp. SM9913]
 gi|315016325|gb|ADT69663.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 847

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 11/209 (5%)

Query: 64  ILVENLSLVII-SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I +E LS++ I   + S ++     S + E   +  ++ QL+  D L+GL N   F   L
Sbjct: 371 IYIEWLSIIEIKEPSHSEVIYAAIFSDITERKSAEEKVVQLAYFDELTGLPNRRLFNDRL 430

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                      + L+++F D+D FK++ND+ GH  GD ++  +S++++        + RL
Sbjct: 431 SMALASAHRDKQMLAVMFIDLDRFKEVNDSLGHNAGDTLLKLVSERIINTLNEGDTLARL 490

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIS 234
           GG+EF      ++ + A  LA  +   + N+   +  G  + +T S G A          
Sbjct: 491 GGDEFIVLCEINNVEGAITLAESILNHL-NTPFKL-EGFEVGVTASIGAAVYPDDGLDSE 548

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++  AD A+Y +K  GRN    F    N
Sbjct: 549 TLLKHADIAMYRSKDVGRNSFQLFQPSMN 577


>gi|304409412|ref|ZP_07391032.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS183]
 gi|307303770|ref|ZP_07583523.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica BA175]
 gi|304351930|gb|EFM16328.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS183]
 gi|306912668|gb|EFN43091.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica BA175]
          Length = 920

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 102/207 (49%), Gaps = 11/207 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFI--- 119
           I  +N+++  I   +  +  +++  + +     +  +++ L+  D L+ L N   F+   
Sbjct: 455 IFPQNITISTIYDEVGDVRYFVAVFADISAQKENEAQLTHLAYFDPLTHLPNRMKFMMQL 514

Query: 120 ----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     N +L+ V  D+D FK IND+FGH +GD+++  L+ +L    G    + R+
Sbjct: 515 KQEVRQAKRLNLQLATVMIDVDLFKHINDSFGHSIGDEMLVELAKRLRSQVGDQDVLSRI 574

Query: 176 GGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF A   G    ++A +  N LR++ E     +S+G  + +T S G++         
Sbjct: 575 GGDEFVALISGIDNSEDATVAINQLRQVFEQ-PFIVSTGDHLRLTASMGVSLYPSDGTDA 633

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSD 260
            T++  AD A+Y AK  GRN    +++
Sbjct: 634 DTLLRNADAAMYRAKNDGRNNYAFYTE 660


>gi|170699576|ref|ZP_02890616.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
 gi|170135527|gb|EDT03815.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
          Length = 492

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 10/215 (4%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           +    +  V   +LV       + L ++    L+    + + +  L+R D L+GL N  +
Sbjct: 278 YAAWRHRAVTIGALVATFGAAFIALSFLLSGQLRRRMRAESELVLLARTDGLTGLNNRRS 337

Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
           F   L     +        S++F D+D FK  ND +GH  GD  +A ++  +      P 
Sbjct: 338 FGEVLDREWRRARRTHSVFSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPV 397

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               R GGEEF      +    AA +A  +R  I+   +  +      +T S G+A    
Sbjct: 398 DTAARYGGEEFVVLLPDTPPAGAAQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTP 457

Query: 230 KEPIS--TIIYRADQALYVAKKSGRNRVVCFSDIE 262
           ++      +I  AD+ALY AK  GRNRV     ++
Sbjct: 458 EQDNEPGAVIKAADEALYYAKTIGRNRVAALQPLD 492


>gi|253999666|ref|YP_003051729.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4]
 gi|253986345|gb|ACT51202.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4]
          Length = 765

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 59/200 (29%), Positives = 93/200 (46%), Gaps = 12/200 (6%)

Query: 77  TISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           TI +L GY +   + ++   S   I + +  D L+GL N   F   L         + + 
Sbjct: 292 TIIVLRGYRLKREVARQAAASQKLIWKQANYDFLTGLPNRPMFHKQLAEEIHKSLQHQQP 351

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS- 187
           L ++F D+D FKQIND  GH +GDK++     ++  V      + RLGG+EF        
Sbjct: 352 LVLMFLDLDNFKQINDQLGHSIGDKLLVETGARIAAVARDCTLLARLGGDEFTIVLSNVQ 411

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYV 246
           ++Q+   L   + + +  S         +++T S GIA    H   + T++  ADQA+Y 
Sbjct: 412 NQQQVEWLCERILRQV--SLPFTIENHVVYVTTSIGIASFPEHSRDVETLMKYADQAMYE 469

Query: 247 AKKSGRNRVVCFSDIENNTC 266
           AK+ GRNR   FS       
Sbjct: 470 AKRLGRNRYQFFSPSMQELA 489


>gi|269925562|ref|YP_003322185.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Thermobaculum terrenum ATCC BAA-798]
 gi|269789222|gb|ACZ41363.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Thermobaculum terrenum ATCC BAA-798]
          Length = 1785

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 91/184 (49%), Gaps = 11/184 (5%)

Query: 90   LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
            + +     ++++  +  D L+GL N + F+  L         YN   +++F D+D FK +
Sbjct: 1343 ITDKKKLEDKLAYQAFHDALTGLPNRALFMDRLKGALARAKRYNSCCAVLFLDLDRFKHV 1402

Query: 143  NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRK 201
            ND+ GH  GD+++  + ++L+ V  +   V R GG+EF          + A  +A  + K
Sbjct: 1403 NDSLGHQYGDQLLIEVGNRLLSVVRSADTVARRGGDEFTILLEPICELEYAKQVAERVIK 1462

Query: 202  IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +E  +  + +G  ++I+ S GIA          +I+ AD A+Y AK  GR R   + D+
Sbjct: 1463 ELE--KPFLINGQELYISTSIGIALSNEYSDAEELIHNADVAMYWAKSRGRARYEVY-DL 1519

Query: 262  ENNT 265
              +T
Sbjct: 1520 SMST 1523


>gi|217974216|ref|YP_002358967.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella baltica OS223]
 gi|217499351|gb|ACK47544.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS223]
          Length = 921

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 102/207 (49%), Gaps = 11/207 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFI--- 119
           I  +N+++  I   +  +  +++  + +     +  +++ L+  D L+ L N   F+   
Sbjct: 456 IFPQNITISTIYDEVGDVRYFVAVFADISAQKENEAQLTHLAYFDPLTHLPNRMKFMMQL 515

Query: 120 ----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     N +L+ V  D+D FK IND+FGH +GD+++  L+ +L    G    + R+
Sbjct: 516 KQEVRQAKRLNLQLATVMIDVDLFKHINDSFGHSIGDEMLVELAKRLRSQVGDQDVLSRI 575

Query: 176 GGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF A   G    ++A +  N LR++ E     +S+G  + +T S G++         
Sbjct: 576 GGDEFVALISGIDNSEDATVAINQLRQVFEQ-PFIVSTGDHLRLTASMGVSLYPSDGADA 634

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSD 260
            T++  AD A+Y AK  GRN    +++
Sbjct: 635 DTLLRNADAAMYRAKNDGRNNYAFYTE 661


>gi|238895484|ref|YP_002920219.1| hypothetical protein KP1_3555 [Klebsiella pneumoniae NTUH-K2044]
 gi|238547801|dbj|BAH64152.1| hypothetical protein KP1_3555 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 559

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 53/199 (26%), Positives = 101/199 (50%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+ +  T+ LLL + +   +++ + +    +   +  D L+ LLN  A          
Sbjct: 357 LTLMWVLFTLMLLLSWLVIRRMVRNMSVLQTSLEWQAWHDALTRLLNRGALFEQAMAVAS 416

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   L+++  D+D+FK IND +GH  GD+V++ ++  L         +GR+GGEEF
Sbjct: 417 DCQRSGRPLAVIQLDLDHFKHINDRYGHQAGDRVLSMVASTLSSAVRQGDLLGRVGGEEF 476

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIY 238
                 ++ QEAA +A  LR+ I+  ++ + +  ++ ++ S G++    +       +  
Sbjct: 477 CIVMPNTTLQEAAAVAERLRQRIQGREVFLHNNVTLRVSASLGVSASEERGEYQFEALQS 536

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD  LY+AK++GRN+V  
Sbjct: 537 VADGRLYLAKQNGRNQVCF 555


>gi|107027525|ref|YP_625036.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
 gi|116693763|ref|YP_839296.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
 gi|105896899|gb|ABF80063.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
 gi|116651763|gb|ABK12403.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
          Length = 521

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 15/210 (7%)

Query: 63  YILVENLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSA 117
           Y    + ++ I S  + L +G++  S+L     ++   +   +  L+R D L+GL N   
Sbjct: 298 YAAWYDRAIPIGSAMVLLAIGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRM 357

Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
              +L     +       LS++F D+DYFK  ND  GH  GD  +A +   +      P 
Sbjct: 358 LDVTLAREWRRAARSQHALSLLFIDVDYFKHYNDTQGHQAGDDALAAVGHCIAGCLRRPA 417

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AER 227
            +  R GGEEF           A  +A  +R  I +  I   +G    +T+S G+  +  
Sbjct: 418 DYAARYGGEEFVVVLPDIDTDGAVTIAETIRTGILDLGIRHDAGTVGRLTVSIGVTTSYP 477

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              + I   +  AD+ALY AK+ GRNR+V 
Sbjct: 478 ERDDNIQAALKLADEALYRAKEGGRNRIVV 507


>gi|117925517|ref|YP_866134.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Magnetococcus sp. MC-1]
 gi|117609273|gb|ABK44728.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Magnetococcus sp. MC-1]
          Length = 1275

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 11/185 (5%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
             + +   +  ++ +L+  D L+ L N + F   L           + L + F D+D FK 
Sbjct: 823  DITQQKETEEQLEKLAYYDPLTELPNRALFRDRLEQEMRLSARGGKSLGLFFIDLDRFKY 882

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLR 200
            +ND+ GH  GD ++  ++ ++     T   V RLGG+EF     G  +  + A +A  + 
Sbjct: 883  VNDSLGHDKGDDLLIQVAGRIKHHLRTSDTVARLGGDEFTVILPGIEQTNDVARIAGAIV 942

Query: 201  KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            K +   ++ +  G  + I  S GIA      E   T+   AD A+Y AK+ GR     F+
Sbjct: 943  KSL--GEVFVLQGHEVFIGGSIGIAMHPDDGEDYETLTKHADTAMYRAKEEGRGTYKFFT 1000

Query: 260  DIENN 264
               N 
Sbjct: 1001 SDMNE 1005


>gi|319428543|gb|ADV56617.1| diguanylate cyclase [Shewanella putrefaciens 200]
          Length = 378

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 80/251 (31%), Positives = 124/251 (49%), Gaps = 20/251 (7%)

Query: 25  HTFMIYFSIF-FSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN--LSLVIISITISLL 81
           + F I+F +  FSI+I   IF   + L Y+ LT  +G+   L++N    + + S   +LL
Sbjct: 128 YPFFIFFVLIGFSIYIQ--IFFLTVALSYVFLTENHGVLDELIQNAYFQISVQSSVSTLL 185

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFF 134
           +  +        +     + + S+ D L+G+ N   F + L S   +        S++  
Sbjct: 186 IMLVFSWSYYHRYNLQLALEKSSQTDPLTGVANRRHFDNQLKSATTRSARSGVECSLILL 245

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+IND FGHP GD+VI  L+D  V        V RLGGEEFA     ++  +A  
Sbjct: 246 DIDHFKRINDTFGHPTGDRVICALADLCVKQSRATDLVARLGGEEFAIILPDTNITDAEN 305

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--------ISTIIYRADQALYV 246
           LA  +RK +E+  +   +G  +  TIS GI+     +         +   I +AD ALY 
Sbjct: 306 LAERIRKHVEDISVAGDAGEIVKWTISLGISALPLNKSSANTTEIVMEMFIRQADSALYE 365

Query: 247 AKKSGRNRVVC 257
           AK +GRN+ V 
Sbjct: 366 AKNNGRNQTVL 376


>gi|169829516|ref|YP_001699674.1| diguanylate cyclase [Lysinibacillus sphaericus C3-41]
 gi|168994004|gb|ACA41544.1| putative diguanylate cyclase (GGDEF domain) [Lysinibacillus
           sphaericus C3-41]
          Length = 325

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 84/177 (47%), Gaps = 12/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           +L      + +LS  D L+GL N   F   L           +  S+   DID+FK++ND
Sbjct: 153 KLLTVNASLVELSETDKLTGLKNRRFFQEKLEQQLNSYYESAKPFSLCILDIDHFKKVND 212

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH VGD V+A L+  L         V R GGEEF      +    A  +   +RK + 
Sbjct: 213 TFGHQVGDDVLAQLAQLLTQRARKEDTVVRYGGEEFVMILPETEIAAAKEIGEQIRKTVA 272

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                +       +TIS G+A    K+  +T++  AD ALY +KK+GRN+V  F D+
Sbjct: 273 LDHWPVG-----QVTISIGLATVTSKDTGTTLLKNADDALYASKKNGRNQVTHFYDM 324


>gi|77163866|ref|YP_342391.1| PAS sensor diguanylate cyclase/phosphodiesterase [Nitrosococcus
           oceani ATCC 19707]
 gi|254435141|ref|ZP_05048648.1| PAS fold family [Nitrosococcus oceani AFC27]
 gi|76882180|gb|ABA56861.1| diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
 gi|207088252|gb|EDZ65524.1| PAS fold family [Nitrosococcus oceani AFC27]
          Length = 979

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 9/185 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
           G  + E   +  R++ L+  D L+ L N   F             Y  +  +++FD+D F
Sbjct: 529 GHDVTEREQAEQRLAWLADHDPLTELFNRRRFQHEFEQILGASIRYGTQGGLLYFDLDQF 588

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND  GH  GD ++  ++D+L  V      V RLGG+EFA        + A  +A  +
Sbjct: 589 KYINDTSGHQAGDALLRMVADKLRQVVRGSDIVARLGGDEFAVVIRECDVESAVRVARKV 648

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +   +     G +  I++S GIA    H   +  ++  AD A+Y AK+ GR R   F
Sbjct: 649 CTQLSTLEFPARGG-NHSISLSIGIALFPLHGATVRDLMANADVAMYQAKEEGRGRWHLF 707

Query: 259 SDIEN 263
           S  E 
Sbjct: 708 SSDEQ 712


>gi|90424799|ref|YP_533169.1| response regulator PleD [Rhodopseudomonas palustris BisB18]
 gi|90106813|gb|ABD88850.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris BisB18]
          Length = 457

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 82/165 (49%), Gaps = 9/165 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N     + L +         + L+++  DID+FK IND++GH  GD V
Sbjct: 290 EMAITDGLTGLHNRRYMETHLATLAEQAGVRGKPLALMMLDIDFFKAINDSYGHDAGDDV 349

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG- 213
           +   + ++           R GGEEF      +    A ++A  LR+ I      I  G 
Sbjct: 350 LREFAVRIRKSIRGIDLACRYGGEEFVVVMPETDLAVAGMVAERLRRAIAGELFAIEKGA 409

Query: 214 PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             I +TIS G++      EPI+ ++ RAD ALY AK  GRNRVV 
Sbjct: 410 KRIEVTISIGLSTLEKKGEPIADVLKRADVALYRAKHDGRNRVVA 454


>gi|152970968|ref|YP_001336077.1| hypothetical protein KPN_02424 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150955817|gb|ABR77847.1| hypothetical protein KPN_02424 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 559

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 53/199 (26%), Positives = 101/199 (50%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+ +  T+ LLL + +   +++ + +    +   +  D L+ LLN  A          
Sbjct: 357 LTLMWVLFTLMLLLSWLVIRRMVRNMSVLQTSLEWQAWHDALTRLLNRGALFEQAMAVAS 416

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   L+++  D+D+FK IND +GH  GD+V++ ++  L         +GR+GGEEF
Sbjct: 417 DCQRSGRPLAVIQLDLDHFKHINDRYGHQAGDRVLSMVASTLSSAVRQGDLLGRVGGEEF 476

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIY 238
                 ++ QEAA +A  LR+ I+  ++ + +  ++ ++ S G++    +       +  
Sbjct: 477 CIVMPNTTLQEAAAVAERLRQRIQGREVFLHNNVTLRVSASLGVSASEERGEYQFEALQS 536

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD  LY+AK++GRN+V  
Sbjct: 537 VADGRLYLAKQNGRNQVCF 555


>gi|104781427|ref|YP_607925.1| sensory box protein [Pseudomonas entomophila L48]
 gi|95110414|emb|CAK15122.1| putative sensory box protein [Pseudomonas entomophila L48]
          Length = 703

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 79/184 (42%), Gaps = 11/184 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
                   E   ++ +I  ++  D L+GL N + F   L           +  + +  D+
Sbjct: 255 LFVAEDATEELAAHAQIHHMAHHDALTGLPNRTLFHERLKQALLRGEDDGKLTAALCLDL 314

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-IL 195
           D FK IND  GH  GDK++  L  +L         + RLGG+EFA    G   +EAA   
Sbjct: 315 DNFKNINDTQGHAFGDKLLRALGKRLRRELREHDTLARLGGDEFAVVLSGLDSREAASST 374

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
           A  L + I         G    + +S G+A           ++  AD ALY AK++GRNR
Sbjct: 375 AQRLIEAI--CPPFQIEGHQFSVGVSIGVATAPDDHDQAEQLLGYADMALYEAKRNGRNR 432

Query: 255 VVCF 258
             CF
Sbjct: 433 FECF 436


>gi|117922165|ref|YP_871357.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117614497|gb|ABK49951.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 625

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 93/183 (50%), Gaps = 11/183 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL     ++++ S ID L+G+ N SAF   L             ++++  DID FK I
Sbjct: 440 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLLAESRISRRQETPIALLMLDIDRFKSI 499

Query: 143 NDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD+ +  ++  L          V R GGEEFA     ++ + A  +A  +R 
Sbjct: 500 NDQFGHLAGDQALKVIATTLQQHLKRPTDLVSRFGGEEFAIILPNTTAEGAIQVAESIRD 559

Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +  +    G  I +T+S G++     + +  + ++ +AD+ALY AK SGRN+V  ++
Sbjct: 560 AVTSIGLAW-EGKPIPLTVSIGVSADVISNDQHSTELLEQADKALYQAKNSGRNQVKLYA 618

Query: 260 DIE 262
             +
Sbjct: 619 PAQ 621


>gi|153002528|ref|YP_001368209.1| PAS/PAC and GAF sensor(s)-containing diguanylate
            cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|151367146|gb|ABS10146.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella baltica OS185]
          Length = 1508

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 11/186 (5%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            + + +   +   +  L+  D L+GL N + F   L          N  ++++F D+D FK
Sbjct: 1062 TDITQRKKAEEDLRFLASFDTLTGLPNRTLFQDRLNHAITQAHRANNIVALLFLDLDRFK 1121

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDL 199
             IND+ GH VGD ++  ++ +L         V RLGG+EF     G ++ +AA +++  +
Sbjct: 1122 HINDSMGHHVGDLLLKAVARRLQNAVRDGDTVARLGGDEFTIILEGVAKTKAATLISEKV 1181

Query: 200  RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             +  +     +    ++ I+ S GI+   +  +   ++I  AD A+Y AK SGRN    +
Sbjct: 1182 LRAFQT--PFLLDDKTLTISTSIGISLYPNDADNADSLIKFADTAMYHAKSSGRNNFQFY 1239

Query: 259  SDIENN 264
            +   N 
Sbjct: 1240 TSKLNE 1245


>gi|302879088|ref|YP_003847652.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
 gi|302581877|gb|ADL55888.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
          Length = 1138

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 16/187 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             + E   S + I +L+  D L+GL N    +  L          ++  +I+F D+D FK
Sbjct: 685 RDITERKKSESEIVRLAFYDPLTGLPNRRLLMDRLQHALTSNLRNDKHGAILFIDLDNFK 744

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE------QEAAI 194
            +ND  GH VGD ++  ++ +L         V RLGG+EF       S            
Sbjct: 745 SLNDTKGHAVGDLLLVEVAQRLKGCVREEDTVARLGGDEFVVLLDNLSHGHDNAGAHTKR 804

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           +A  + + +  S   +  G   H + S G+A  C        ++ RAD A+Y +K +GRN
Sbjct: 805 VAEKILQALNLS--YMLQGYEYHSSPSIGVALFCADASSPDELLKRADSAMYQSKAAGRN 862

Query: 254 RVVCFSD 260
            V  + +
Sbjct: 863 TVRFYDE 869


>gi|83716605|ref|YP_439319.1| GGDEF domain-containing protein [Burkholderia thailandensis E264]
 gi|83650430|gb|ABC34494.1| GGDEF domain protein [Burkholderia thailandensis E264]
          Length = 506

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 13/196 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE----- 127
           + ++   ++  Y++ S+ ++   +   +++L+  D L+GL N  A   +L          
Sbjct: 307 VFALIFVVMSAYLAHSLWRK-STAEAALARLAGTDSLTGLHNRRALDETLEREWRRAVGG 365

Query: 128 --KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAA 184
              L+I+F DID+FK+ ND +GH VGD+V+A +S  +          V R GGEEF    
Sbjct: 366 ERPLAILFVDIDHFKRYNDTYGHQVGDEVLATVSRCIAQQAARLGDVVARYGGEEFVVVL 425

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRA 240
             +    A ++A  +R  +    I         +T+S G+A           I+ I+  A
Sbjct: 426 PDTPRGGALVVAERVRLGVRMLGIEHEGSEVGFVTVSVGVAVWQPDGARAPHIAAIVEAA 485

Query: 241 DQALYVAKKSGRNRVV 256
           DQALY AK +GRNRVV
Sbjct: 486 DQALYQAKAAGRNRVV 501


>gi|70732650|ref|YP_262413.1| developmental regulator MorA [Pseudomonas fluorescens Pf-5]
 gi|68346949|gb|AAY94555.1| developmental regulator MorA [Pseudomonas fluorescens Pf-5]
          Length = 1282

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 15/192 (7%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            S + E   S  RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 831  SDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQSAERQKSWVVLMFLDLDRFK 890

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAIL 195
             IND+ GH  GD+++  ++ +L+        V R+GG+EF       S +E     A  +
Sbjct: 891  PINDSLGHAAGDRMLKEMATRLLGCVDDDDTVARMGGDEFTLLLQPRSSREMALNRAIHV 950

Query: 196  ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            A  +   +   +  +  G    +T S GIA        +S ++  AD A+Y AK+ G+N 
Sbjct: 951  AEQILASL--VKPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKERGKNN 1008

Query: 255  VVCFSDIENNTC 266
               +    N + 
Sbjct: 1009 FQFYQADMNASA 1020


>gi|296137258|ref|YP_003644500.1| diguanylate cyclase with PAS/PAC sensor [Thiomonas intermedia K12]
 gi|295797380|gb|ADG32170.1| diguanylate cyclase with PAS/PAC sensor [Thiomonas intermedia K12]
          Length = 420

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 4/173 (2%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHS---AFISSLGSYNEKLSIVFFDIDYFKQIND 144
             + E      R+  L+  D L+G+ N S     +  L      LS++  D+DYFK+IND
Sbjct: 240 RDISERKALERRLEHLATFDSLTGIHNRSSILGILERLLQRKAPLSVLLLDLDYFKRIND 299

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD+V+      +     +  F GRLGGEEF     G+ E EA  +A  LR  + 
Sbjct: 300 GFGHAAGDRVLCRFVQIIEDEKRSRDFFGRLGGEEFLLILDGADEAEAGQIAERLRAAVS 359

Query: 205 NSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              I ++ G ++ +T+S G+   R   +  + ++ RAD+ALY AK+ GRN V 
Sbjct: 360 AEAIALAEGEAVALTVSIGMTQSRPGDQRTADVLVRADRALYRAKQMGRNCVC 412


>gi|160877248|ref|YP_001556564.1| PAS/PAC and GAF sensor(s)-containing diguanylate
            cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|160862770|gb|ABX51304.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS195]
 gi|315269453|gb|ADT96306.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS678]
          Length = 1508

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 11/186 (5%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            + + +   +   +  L+  D L+GL N + F   L          N  ++++F D+D FK
Sbjct: 1062 TDITQRKKAEEDLRFLASFDTLTGLPNRTLFQDRLNHAITQAHRANNIVALLFLDLDRFK 1121

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDL 199
             IND+ GH VGD ++  ++ +L         V RLGG+EF     G ++ +AA +++  +
Sbjct: 1122 HINDSMGHHVGDLLLKAVARRLQNAVRDGDTVARLGGDEFTIILEGVAKTKAATLISEKV 1181

Query: 200  RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             +  +     +    ++ I+ S GI+   +  +   ++I  AD A+Y AK SGRN    +
Sbjct: 1182 LRAFQT--PFLLDDKTLTISTSIGISLYPNDADNADSLIKFADTAMYHAKSSGRNNFQFY 1239

Query: 259  SDIENN 264
            +   N 
Sbjct: 1240 TSKLNE 1245


>gi|104779686|ref|YP_606184.1| sensory box protein [Pseudomonas entomophila L48]
 gi|95108673|emb|CAK13367.1| putative sensory box proten ; GGDEF domain/EAL domain protein
           [Pseudomonas entomophila L48]
          Length = 1247

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           + +  L  +  ++   +  D L+GL N + F + L S        N + +++F D+D FK
Sbjct: 791 ADISSLKHAQAKLDYQAHHDPLTGLPNRALFENRLLSALTCAQVSNRQGAVLFLDLDRFK 850

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            IND+ GHPVGD ++  ++ +L         V RLGG+EF     G  +  +A+ +AN L
Sbjct: 851 HINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFIILLPGLHKPSDASAIANKL 910

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                      +       + S GI+        ++T+I  AD A+Y +K  GRNRV  +
Sbjct: 911 LACFHA--PFQAGEHEFFTSASIGISLYPQDGSDVATLIRNADAAMYRSKAKGRNRVETY 968

Query: 259 S 259
           +
Sbjct: 969 T 969


>gi|71281176|ref|YP_270943.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71146916|gb|AAZ27389.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 334

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 91/173 (52%), Gaps = 9/173 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           +L  +   I+Q+SRID L+ + N   +  SL         +++KLS++  D+D+FK +ND
Sbjct: 156 QLQKTLAEIAQISRIDGLTQVYNRRHWQDSLEQEYAKARRHDKKLSLIMLDLDHFKLLND 215

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH  GD V+  +S  +  +       GR GGEEFA     +    A  LA  + +II 
Sbjct: 216 NYGHQGGDMVLIEVSALISTLLRVEDTFGRYGGEEFAIILPETDSAGAIELAQRICRIIA 275

Query: 205 NSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
            +    +    I +T+S G+A+   KE     +I +AD ALY AK  GRN+V 
Sbjct: 276 TTPFTYND-QVIKVTVSLGVAQLSSKESNYEELITQADSALYQAKSQGRNQVC 327


>gi|242238673|ref|YP_002986854.1| diguanylate cyclase [Dickeya dadantii Ech703]
 gi|242130730|gb|ACS85032.1| diguanylate cyclase [Dickeya dadantii Ech703]
          Length = 490

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 108/207 (52%), Gaps = 16/207 (7%)

Query: 61  LEYILVENLSL-VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           L ++L++N  L +++S+T+ +L+    G+          R+  ++  D L+GL+N  AF 
Sbjct: 292 LWFMLLKNTGLSILVSVTMLILIWLTIGAY-------QRRLELMATTDKLTGLMNRQAFE 344

Query: 120 ---SSLG----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
               +L     + +   S++  D+D+FK+IND +GH +GD+V+   +  +        F 
Sbjct: 345 YIVRTLRMKQSAQHHTFSLILIDLDHFKKINDKYGHNIGDRVLVRAASLIKRAIRKTDFA 404

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232
            R GGEEF       S  +A  +A  +R+ +  + ++      I +T+S G+AE    E 
Sbjct: 405 CRWGGEEFVVLLGECSLHQAHQIAEKIRQAVRFALVSHRH-QVIDLTLSCGVAESHSGES 463

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  ++ RAD+ALY AK+ GR+R V   
Sbjct: 464 LDHLVQRADKALYQAKRQGRDRAVMAD 490


>gi|224824596|ref|ZP_03697703.1| diguanylate cyclase with PAS/PAC sensor [Lutiella nitroferrum 2002]
 gi|224603089|gb|EEG09265.1| diguanylate cyclase with PAS/PAC sensor [Lutiella nitroferrum 2002]
          Length = 753

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 16/189 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           ++   + E   +   I +L+  D L+GL N       L               ++F D+D
Sbjct: 551 VTFQDVTERKQAEAEIHRLAFYDPLTGLANRRLLHDRLAQAFAKSARQRSHGVVLFIDLD 610

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ------E 191
           +FK +ND  GH VGD ++  ++ +LV        V RLGG+EF         +      +
Sbjct: 611 HFKALNDTLGHDVGDVLLVEVARRLVEAVREEDTVARLGGDEFVVMLERLGGELLPAAFQ 670

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250
           A  +A  +R  +  +Q  +  G     + S GI+    ++     ++  AD ALY AKK+
Sbjct: 671 AERVAEKIRTAL--NQPYVLKGQPYRSSPSIGISLFLGEQKTRDELLKHADIALYRAKKA 728

Query: 251 GRNRVVCFS 259
           GRN V C+ 
Sbjct: 729 GRNTVRCYD 737


>gi|85711554|ref|ZP_01042612.1| serine/threonine kinase with two-component sensor domain [Idiomarina
            baltica OS145]
 gi|85694706|gb|EAQ32646.1| serine/threonine kinase with two-component sensor domain [Idiomarina
            baltica OS145]
          Length = 1632

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 56/167 (33%), Positives = 82/167 (49%), Gaps = 9/167 (5%)

Query: 98   NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
             ++  L+  D L+ L N   F+S L            + ++V  DID FK IND +GH  
Sbjct: 1463 KQLQHLANTDALTQLPNRRFFMSELQQSHDLFKRKGHQAAVVMMDIDSFKVINDRYGHSA 1522

Query: 151  GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
            GD+V+  L+ Q            R+GGEEFA     +   +   +A  LR+ IE   I +
Sbjct: 1523 GDEVLKALAKQFNHAVRMNDIAARIGGEEFALLIRDADMPQVLAIAERLRQAIELDSI-V 1581

Query: 211  SSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVV 256
             SG  +  T+S GI+      +   +I+ RAD+ALY AK  G+NRV 
Sbjct: 1582 HSGEEVDYTVSIGISLFETQDDEFESILNRADRALYRAKSLGKNRVC 1628


>gi|330901520|gb|EGH32939.1| GGDEF domain-containing protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330977287|gb|EGH77242.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 689

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 60/184 (32%), Positives = 89/184 (48%), Gaps = 11/184 (5%)

Query: 82  LGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSI 131
           L     S+ +E            Q + ID L+GL N +A+   L     +       L +
Sbjct: 504 LAARVASMEQEALGFRTHLEEQRQKALIDPLTGLPNRAAWGERLEQEMARWQEDKNSLLV 563

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK+IND +GH  GDKV+  +++ L        F+ R GGEEF      +S   
Sbjct: 564 CILDLDHFKRINDGYGHLAGDKVLKIVANVLSKRLRADDFMARFGGEEFVMLLPATSPAA 623

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              L ++LR  +E+   +   G  + IT+S G+      E   T I RADQALY AK++G
Sbjct: 624 GLTLLDELRAAVESCPFHFK-GERVTITVSIGLTAFRPSEKSDTAIKRADQALYKAKENG 682

Query: 252 RNRV 255
           RNR+
Sbjct: 683 RNRI 686


>gi|327543277|gb|EGF29710.1| protein containing Diguanylate cyclase, predicted domains
           [Rhodopirellula baltica WH47]
          Length = 797

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 9/176 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S   +L      + + +  D L+G+ N + F S L          N   S++  DID+FK
Sbjct: 468 SDRNKLQSQIQTLHKKATSDPLTGIANRAEFDSRLVRATADSKNNNSTFSLIICDIDHFK 527

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND  GHP GD+ +   +  L         V R GGEEF   A+ S    AA  A  +R
Sbjct: 528 QVNDVHGHPAGDEALVQFARVLESHARDEDLVARYGGEEFVFLAINSDNATAARRAEQIR 587

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           K IE + ++  +G S  +T+S G+ E    +   TI+ R+D+AL  AK++GRNRVV
Sbjct: 588 KAIEVTPLDGLNGES--VTVSFGVTEYQTGDAAETILARSDRALLQAKENGRNRVV 641


>gi|289207702|ref|YP_003459768.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
 gi|288943333|gb|ADC71032.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
          Length = 1072

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 55/181 (30%), Positives = 84/181 (46%), Gaps = 10/181 (5%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNF 146
             +  ++  L+  D L+GL N   F   L             L++++FD+D FK IND F
Sbjct: 640 RQTAQQLVYLAEHDPLTGLYNRHRFQRQLEQAIHTARRRGTHLALIYFDLDEFKTINDTF 699

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD V+   + ++  +        RLGG+EFA     ++E+E   LA  + + I   
Sbjct: 700 GHRAGDTVLVRAAGEIASLVREEEIFARLGGDEFAILVDHAAEREPEGLAERVARAISAI 759

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                 G +  +T S GIA    H + +  ++  AD A+Y AK SG+N    F D   NT
Sbjct: 760 PFRFR-GQNYRLTASIGIARYPEHGDNVEDLVAHADAAMYQAKDSGKNTWAVF-DASRNT 817

Query: 266 C 266
            
Sbjct: 818 A 818


>gi|89902242|ref|YP_524713.1| PAS/PAC sensor-containing diguanylate cyclase [Rhodoferax
           ferrireducens T118]
 gi|89346979|gb|ABD71182.1| diguanylate cyclase with PAS/PAC sensor [Rhodoferax ferrireducens
           T118]
          Length = 571

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 11/180 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S +     +  ++  L+  D L+GL N + F   L            K++++F D+D FK
Sbjct: 388 SDITTRKAAEEQVLFLAHHDGLTGLPNRALFADRLHQAIVHAHRDRAKVAVMFLDLDNFK 447

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           Q ND  GH +GD+++  ++ +L         V RLGG+EF       ++  + A L+  +
Sbjct: 448 QTNDTLGHHIGDQLLQMVAQRLTNCMREGDTVARLGGDEFTVVLESITNTGDIAYLSQKI 507

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
              +  S   +  G  I +T S G++      E    +I  AD A+Y AK+ GRN    F
Sbjct: 508 IDTV--SHPLLLDGHEIAVTCSIGVSVYPDDSEESDDLIKYADTAMYRAKEGGRNNFRFF 565


>gi|288958904|ref|YP_003449245.1| two-component response regulator modulated diguanylate cyclase
           [Azospirillum sp. B510]
 gi|288911212|dbj|BAI72701.1| two-component response regulator modulated diguanylate cyclase
           [Azospirillum sp. B510]
          Length = 290

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 82/169 (48%), Gaps = 8/169 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHP 149
              + +L+  D L+G +N   F+            Y+  LS+V  DID+FK++ND  GH 
Sbjct: 110 QRDLERLATTDPLTGAMNRRRFLERGAEEFTRSRRYDRPLSVVMLDIDHFKRVNDTHGHA 169

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+ I            +   +GRLGGEEFA     +    A   A  LR+ I    + 
Sbjct: 170 TGDEAIRGTVRACKETLRSCDIIGRLGGEEFAVVMPETPPVNAFAAAQRLRQAIAAKPVR 229

Query: 210 ISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           +  G  +H+T+S G++     +  I  ++ RAD ALY AK +GRNRV  
Sbjct: 230 LEEGGEMHVTVSLGLSWMNASDSGIEPLLARADAALYRAKNAGRNRVEV 278


>gi|71735129|ref|YP_272560.1| diguanylate cyclase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555682|gb|AAZ34893.1| diguanylate cyclase, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320322200|gb|EFW78296.1| diguanylate cyclase, putative [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320331851|gb|EFW87789.1| diguanylate cyclase, putative [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330872977|gb|EGH07126.1| diguanylate cyclase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 686

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 60/184 (32%), Positives = 88/184 (47%), Gaps = 11/184 (5%)

Query: 82  LGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSI 131
           L     S+ +E            Q + ID L+GL N +A+   L     K       L +
Sbjct: 501 LSARVASMEQEALGFRTHLEEQRQKALIDPLTGLPNRAAWGERLEQEMSKWQHEKNSLLV 560

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK+IND +GH  GDKV+  +++       +  F+ R GGEEF      +    
Sbjct: 561 CILDLDHFKRINDGYGHLAGDKVLKIVANVFRKRLRSDDFLARFGGEEFVMLLPATPPGT 620

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              L ++LR  +E+   +   G  + IT+S G+      E   T I RADQALY AK++G
Sbjct: 621 GLTLLDELRAAVESCPFHFK-GERVTITVSIGVTAFRTAERSDTAIKRADQALYRAKENG 679

Query: 252 RNRV 255
           RNRV
Sbjct: 680 RNRV 683


>gi|119776148|ref|YP_928888.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B]
 gi|119768648|gb|ABM01219.1| GGDEF domain-like protein [Shewanella amazonensis SB2B]
          Length = 385

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 122/247 (49%), Gaps = 17/247 (6%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPF-YGLEYILVENLSLV-IISITISLLLGY 84
           + + F++  + ++    +   + LF   +  F Y   Y    + S+  + + TI+LL   
Sbjct: 125 YFLMFAVLPASYLDAKHWPTTLLLFLSNILLFGYFEVYGWQAHPSIAEVPTFTITLLRII 184

Query: 85  ISGS---------ILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGSY---NEKLS 130
           + GS         ++ E + + N   +  L+  D L+GL N  AF+  L          S
Sbjct: 185 MVGSCATTVLVVILISEYYAAQNEQELQYLADTDSLTGLPNRRAFMGRLERTIKDRRSFS 244

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D+FKQIND  GH  GD  + FL++QL        F GR+GGEEFA     +S  
Sbjct: 245 LLIIDVDHFKQINDTTGHQTGDAALQFLANQLNACIQGEDFAGRIGGEEFAMVQFCASPL 304

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           E  + A  LRK I ++  ++  GP +++T+S G+        + T++  AD ALY AK+S
Sbjct: 305 EHLVRAESLRKTIASAHPDLGVGP-VYLTVSIGVCMATPPVSLITLMAMADNALYEAKRS 363

Query: 251 GRNRVVC 257
           GRN V  
Sbjct: 364 GRNCVQV 370


>gi|256032860|pdb|3I5B|A Chain A, Crystal Structure Of The Isolated Ggdef Domain Of Wpsr
           From Pseudomonas Aeruginosa
 gi|256032861|pdb|3I5B|B Chain B, Crystal Structure Of The Isolated Ggdef Domain Of Wpsr
           From Pseudomonas Aeruginosa
          Length = 179

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L   D L+GL N   F   L            +LS++  D+DYFK  ND FGH  GD+ +
Sbjct: 2   LMNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGDEAL 61

Query: 156 AFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-G 213
             ++  +      +     R GGEEFA    G+S   A +LA  +R+ +E+ QI+     
Sbjct: 62  RQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHDQPR 121

Query: 214 PSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRV 255
           P  H+T+S G++        +    +I  ADQALY AK +GRN+V
Sbjct: 122 PGSHLTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGRNQV 166


>gi|220935033|ref|YP_002513932.1| putative diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996343|gb|ACL72945.1| putative diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 882

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 12/204 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +  +NLS+ ++      +  +I+  S +     +  +I  ++  D L+GL N +     L
Sbjct: 678 VYPQNLSISVVRDGEGRISHHIAIFSDITRRKEAEAQIRHMALHDNLTGLANRTLLRDRL 737

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
               E+       L+++F D+D FK +ND  GH  GD+V+  ++ +L         V R+
Sbjct: 738 TQAIEQARRDRNSLALLFIDLDDFKPVNDTHGHEAGDRVLKEVAQRLRAAVRRVDTVARM 797

Query: 176 GGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF        +++ A  +A  +   +  S+    +G +  +  S GIA    H E  
Sbjct: 798 GGDEFVILLQALEQEDMAIQVAEKIIDSL--SRPIQLNGQTCLLGASVGIALHPRHGEDH 855

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
             ++  ADQALY AK +G+NR   
Sbjct: 856 DGLMRAADQALYQAKSAGKNRYQV 879


>gi|302062495|ref|ZP_07254036.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato K40]
          Length = 1254

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 15/192 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + E   S +RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 803 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQQAERQQAWVVLMFLDLDRFK 862

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAA----IL 195
            IND+ GH  GD+++  ++ +L+        V R+GG+EF        + + A      +
Sbjct: 863 PINDSLGHAAGDRMLQEMATRLLACVSADDTVARMGGDEFTLLLQPDITREAALTRAIHV 922

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
           A  +   +      +  G    +T S GIA        +S ++  AD A+Y AK+ G+N 
Sbjct: 923 AERILTSL--VTPFVLEGREFFVTASIGIALSPQDGSELSKLMKNADTAMYHAKERGKNN 980

Query: 255 VVCFSDIENNTC 266
              +    N T 
Sbjct: 981 FQFYQTDMNATA 992


>gi|292490564|ref|YP_003526003.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291579159|gb|ADE13616.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 304

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 109/251 (43%), Gaps = 14/251 (5%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN-----LSLVI 73
            +  +P       S    +FI          L + GL+    +  +L+        + V+
Sbjct: 41  FDYLTPPGIASSISYIGVVFIGLAARSPLALLLFAGLSSLLIVCGVLLSPEPPAPFNTVM 100

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYN 126
           ++ T++L   +++ S       S   +  L+  D L+G+ N    I+           Y 
Sbjct: 101 VNCTLTLFAVWLTASFCYLHLHSVLTLQHLAHRDQLTGVYNRHYLIAKGSEQIKMWQRYQ 160

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
              S++  DIDYFK+IND +GH  GD+V+  ++  L         + R GGEEF      
Sbjct: 161 MPFSLIILDIDYFKKINDQYGHGAGDQVLKHIAKLLQSQTRNVDTICRYGGEEFVILLPM 220

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALY 245
                A  +A+ +++ +  S +   +  +   T+S G+AE   K   +  +I  AD ALY
Sbjct: 221 VDLDGALAMAHRIQRALSKSSLPWET-MTFRPTVSMGVAELVDKRWDLDKLIAEADMALY 279

Query: 246 VAKKSGRNRVV 256
            AK  GRN+++
Sbjct: 280 QAKSLGRNQII 290


>gi|296131952|ref|YP_003639199.1| diguanylate cyclase [Thermincola sp. JR]
 gi|296030530|gb|ADG81298.1| diguanylate cyclase [Thermincola potens JR]
          Length = 222

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 65/220 (29%), Positives = 104/220 (47%), Gaps = 16/220 (7%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           F   ++  A +FL  I    F+   Y L +   L +    I  ++  I G ++K      
Sbjct: 8   FAPAILLSAGLFLLTIT---FFADRYYLGQQGYLWLPMAIIQTVISTICGILIK------ 58

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            R+++ +  D L+GL N   F + L        +S++  D+D FK IND +GH VGD+V+
Sbjct: 59  -RLNREANTDALTGLHNRKYFYTKLSELKTKGPISLLLIDLDDFKSINDTYGHIVGDQVL 117

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              ++ L         + R GGEEFA     +  QEA  +A+ +R  +EN   +  +  +
Sbjct: 118 QQFAEILRRNTRKDDVIARWGGEEFAVILPQTDTQEAIKVASRIRTAVENHLFSYEN-IT 176

Query: 216 IHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRN 253
             IT+S GI     K    I   +  AD+ALY AK+  +N
Sbjct: 177 CRITVSVGITSTREKADTGIEQFVKVADEALYRAKEK-KN 215


>gi|317130492|ref|YP_004096774.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475440|gb|ADU32043.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus cellulosilyticus DSM 2522]
          Length = 696

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 12/191 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           I+   + E+  +  +I  ++  D L+ L N   F   L +          KL+++F DID
Sbjct: 249 INYHDVTEMREAQQKIHHMAYHDYLTDLPNRRYFEEQLEAELQDAKTNRSKLAVLFIDID 308

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILA 196
            FK IND  GH VGDK +  +++ LV +      + R+ G+EF          +    LA
Sbjct: 309 RFKFINDTLGHHVGDKALKEIAEMLVSLVSEKDLIARMAGDEFMILVPHIEALDYVKELA 368

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
           + + K +E+  +       + +T S GI+      E IS I+  AD A+Y AK++  N  
Sbjct: 369 DSILKRMESPIVF--DHYELFVTGSIGISTYPESGEDISVILKNADLAMYKAKETKENSF 426

Query: 256 VCFS-DIENNT 265
             F+ ++E N+
Sbjct: 427 EFFTPEMEENS 437


>gi|70733064|ref|YP_262837.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas fluorescens Pf-5]
 gi|68347363|gb|AAY94969.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas fluorescens Pf-5]
          Length = 707

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 94/191 (49%), Gaps = 12/191 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           ++   + E+   + ++   +  D L+GLLN   F  ++           + L +++ D+D
Sbjct: 257 VTLLDMSEVRHLHQQLEYQAVTDPLTGLLNRRGFYQTVENILLRSDRSGKSLVLLYLDLD 316

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK++ND+ GH  GD+V+ ++S+QL     +   +GR+GG+EF A    S  ++AA +A 
Sbjct: 317 GFKRVNDSLGHDAGDRVLRWVSEQLKDCLHSFDILGRMGGDEFTALLELSFPEQAAKIAE 376

Query: 198 DLRKIIENSQINIS-SGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
            L   IE   IN    G  + +  S GIA        +  ++  AD A+Y AK++GR + 
Sbjct: 377 KL---IERLSINQQIDGLEVVLGASIGIAIYPDCGSNLDGLLRAADIAMYEAKRAGRQQY 433

Query: 256 VCFSDIENNTC 266
             +    N   
Sbjct: 434 RYYDHEMNGRA 444


>gi|71909120|ref|YP_286707.1| diguanylate cyclase [Dechloromonas aromatica RCB]
 gi|71848741|gb|AAZ48237.1| diguanylate cyclase [Dechloromonas aromatica RCB]
          Length = 638

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 57/181 (31%), Positives = 82/181 (45%), Gaps = 9/181 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           + ++E+      + +L+  D L+GL N      +L             LS+V  DID+FK
Sbjct: 459 ARIEEIGRLQVALQELAVRDSLTGLYNRRYLDETLEREVSRARREGIPLSLVMLDIDHFK 518

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND +GH VGD+V+  L+  L           R GGEEF         +   + A   R
Sbjct: 519 QVNDTYGHQVGDEVLRILASTLSADIRAEDVACRYGGEEFLILLPNMPLETTMLRAQGWR 578

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +E   +   +   I  TIS G+A    H +    +   ADQALY AK  GRN+V  F 
Sbjct: 579 SAVEALSVKHGNFQ-ITFTISLGVAAYPEHGKTPDDLTRCADQALYRAKNEGRNQVSVFF 637

Query: 260 D 260
           D
Sbjct: 638 D 638


>gi|167035393|ref|YP_001670624.1| diguanylate cyclase [Pseudomonas putida GB-1]
 gi|166861881|gb|ABZ00289.1| diguanylate cyclase [Pseudomonas putida GB-1]
          Length = 493

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 93/192 (48%), Gaps = 11/192 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGS 124
           + I   I+L++  +  ++++    S      L+ +D L+GL N  +F             
Sbjct: 300 LAICAMITLVVLALVHAMVRRHQAST---EALATLDSLTGLPNRRSFDLLAAQALHEAQR 356

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
            +  L  +  D+D+FK +ND  GH  GD+V+   ++ L         + R GGEEF    
Sbjct: 357 DSGPLVALLIDLDHFKALNDTHGHLAGDEVLRQFANVLQGSLRQSDILCRWGGEEFIVLL 416

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +  ++A  +A  +R+  E    +    P + +T S G++    ++ +  ++ RAD+AL
Sbjct: 417 REAEGRQAVEVAEKIRRRTEQLTFSYDDQP-LRLTTSIGLSSLQPEDTLHALLTRADRAL 475

Query: 245 YVAKKSGRNRVV 256
           Y AK++GRNRV 
Sbjct: 476 YRAKQAGRNRVC 487


>gi|56476628|ref|YP_158217.1| hypothetical protein ebA2147 [Aromatoleum aromaticum EbN1]
 gi|56312671|emb|CAI07316.1| conserved hypothetical protein, contains PAS domains [Aromatoleum
           aromaticum EbN1]
          Length = 740

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 11/183 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           + +   + +RI  L+  D L+ L N +     +            + +++F D+D FK I
Sbjct: 302 ITDQRAAASRIQFLAHYDPLTLLPNRALLQDRMHQGLAHAAREGTRAAVLFLDLDRFKTI 361

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRK 201
           ND+ GH VGD ++  ++ +L         V R GG+EF          ++AA +A  + +
Sbjct: 362 NDSLGHLVGDHLLQEVAQRLKASVREDDTVARRGGDEFIVMLPHVDSAEQAAHVAGKIIE 421

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +E +     +G  ++++ S GI+          T+I  AD A+Y +K SGRN+   F+ 
Sbjct: 422 AMEQTIP--VNGYVLNVSFSIGISVFPDDAMDPDTLIRNADIAMYRSKASGRNQFQFFTA 479

Query: 261 IEN 263
             N
Sbjct: 480 DMN 482


>gi|295700884|ref|YP_003608777.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1002]
 gi|295440097|gb|ADG19266.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1002]
          Length = 428

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 105/207 (50%), Gaps = 12/207 (5%)

Query: 63  YILVENLSLVIISITIS------LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           Y L  + SL+ + I IS      L+        + +     + + + +  D L+GL N  
Sbjct: 221 YGLHRDGSLLPVEIAISKINVGGLIEFTAVIRDIADRVQLMDLLQKQAVTDELTGLPNRR 280

Query: 117 AF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            F   + +L + + KLSI   DIDYFK+IND+FGH +GD+V+  ++  ++          
Sbjct: 281 EFADTVENLLASDSKLSIFLLDIDYFKKINDSFGHDIGDEVLRVMAKVVMSADWRIGVFA 340

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS--SGPSIHITISAGIAERCHKE 231
           R GGEEF AA  G   ++A  +A +LR+ IE          G  I  T+S G+ ER   E
Sbjct: 341 RWGGEEFVAALPGLDIEQATSVAENLRQTIEQQNFEHPWRLGKPIPFTVSIGVTERRPGE 400

Query: 232 -PISTIIYRADQALYVAKKSGRNRVVC 257
             +  I+ RAD ALY AK SGRNRV  
Sbjct: 401 NDVGAIVKRADLALYRAKDSGRNRVEV 427


>gi|218888286|ref|YP_002437607.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218759240|gb|ACL10139.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 569

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 12/204 (5%)

Query: 73  IISITISLLLGYISGSIL----KELFISYNRISQLSRIDCLSGLLNHSAFISSL------ 122
           ++S  I  L  +    I+    + L      + +++  D L+G  N      ++      
Sbjct: 347 LLSAVIYTLHNHSQLRIIEGNNQALTRLNEELRRIAERDHLTGCFNRRRLDEAMNAELAR 406

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                  L++   D+D+FK +ND  GH VGD ++A +++ +      P  + R+GGEEFA
Sbjct: 407 SARSGHPLALAMLDLDHFKAVNDQHGHGVGDAMLAHVTEIIRNQLREPDLLARVGGEEFA 466

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                + E+EA  L   +R+ ++ + +  + GP I +T+SAG+AE          ++ AD
Sbjct: 467 LLLPDTGEREAVTLLERVRRKVQETPLPHADGP-IPMTVSAGVAESRPDIEPGRWMHVAD 525

Query: 242 QALYVAKKSGRNRVVCFSDIENNT 265
            ALY+AK+ GRNR V  + +   T
Sbjct: 526 AALYMAKRCGRNRTVRAAQVPEET 549


>gi|188581340|ref|YP_001924785.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium populi BJ001]
 gi|179344838|gb|ACB80250.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium populi BJ001]
          Length = 700

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 106/236 (44%), Gaps = 15/236 (6%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL--GYISGSI-LKELFIS 96
           A ++F+A+     +GL      E +  E     I+S+T   L   G++S  + + E    
Sbjct: 197 AALVFVADHLRPDLGLDSSAVSEIVHRER----ILSVTTRRLAAGGWVSTFVDVTERRQF 252

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
             +I  L++ D L+ L N +    +L         E  ++++ D+D FK IND FGH  G
Sbjct: 253 ERQIQHLAQHDLLTDLANRATLHQALTETLASETWESCAVLYIDLDRFKPINDTFGHAAG 312

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  ++ +L         + RLGG+EFA     +  Q  A  A  + + +  +Q    
Sbjct: 313 DQLLQEVARRLRRTVRAQDVIARLGGDEFALILRPADPQHLAGTAQQILEAL--NQPYAV 370

Query: 212 SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
               I I  S GIA           ++  AD ALY AKK GRNR   ++    +T 
Sbjct: 371 RRLPIRIGASIGIAAAPLTGRDPDLLLRNADLALYEAKKEGRNRYSFYNPSMGDTA 426


>gi|253996788|ref|YP_003048852.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera mobilis JLW8]
 gi|253983467|gb|ACT48325.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera mobilis JLW8]
          Length = 651

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 89/190 (46%), Gaps = 11/190 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDY 138
           + + +     S  +++ L+  D L+GL N   F+              + ++++F D+D 
Sbjct: 201 THTDITNRKRSEAQVTHLAHYDQLTGLPNRVLFLDRFKQDIKKAQRTGQIVTLMFLDLDK 260

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILAN 197
           FK++ND+ GH +GD ++  ++ +L         V R+GG+EF       + Q     +A 
Sbjct: 261 FKEVNDSLGHDIGDMLLKDVARRLENCVRDSDTVARMGGDEFTIILNDINSQVNIERIAQ 320

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
           D+   +  +         IH++ S GI+     +  +  ++  ADQA+YVAK+ GRNR  
Sbjct: 321 DILNQL--TMPFHLGDEVIHVSTSIGISNYPKDDTEVELLLKNADQAMYVAKEQGRNRYQ 378

Query: 257 CFSDIENNTC 266
            F+ +     
Sbjct: 379 YFTPVMQEEA 388


>gi|171060140|ref|YP_001792489.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Leptothrix cholodnii SP-6]
 gi|170777585|gb|ACB35724.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptothrix cholodnii SP-6]
          Length = 745

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 57/216 (26%), Positives = 97/216 (44%), Gaps = 14/216 (6%)

Query: 64  ILVENLSLVIISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +  E L++  +      +  Y+   + + +       I+QL+  D L+GL N       L
Sbjct: 273 VYAEWLTITAVQDEHRTVTRYVGTMLDISQRKAREEEIAQLAFYDPLTGLPNRRLLKDRL 332

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                       + +++F D+D+FK IND  GH  GD ++  ++ +L         V R+
Sbjct: 333 NQAMAISARSQREGALLFIDLDHFKDINDTRGHDKGDLLLQNVAQRLSGCVREGDTVARI 392

Query: 176 GGEEFAAAA---LGSSEQEAAILANDLRKII--ENSQINISSGPSIHITISAGIAER-CH 229
           GG+EF       L ++  EAA  A  + + I    +   + SG  +H + S G+A    H
Sbjct: 393 GGDEFVVMLGADLSTATDEAASHARSVAEKILAALNLPYLMSGEFVHCSASLGVALFNDH 452

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            + +  ++ RADQA+Y AK  GRN +  F      T
Sbjct: 453 HDTVDELLKRADQAMYQAKAGGRNTLRFFDTAVQQT 488


>gi|116051699|ref|YP_789462.1| two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|313109108|ref|ZP_07795080.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|115586920|gb|ABJ12935.1| probable two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310881582|gb|EFQ40176.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 347

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 88/177 (49%), Gaps = 12/177 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+GL N   F   L            +LS++  D+DYFK  N
Sbjct: 158 QQLLETNLVLQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYN 217

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD+ +  ++  +      +     R GGEEFA    G+S   A +LA  +R+ 
Sbjct: 218 DTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRT 277

Query: 203 IENSQINISS-GPSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRV 255
           +E+ QI+     P  ++T+S G++        +    +I  ADQALY AK +GRN+V
Sbjct: 278 VESLQISHDQPRPGSYLTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGRNQV 334


>gi|315186905|gb|EFU20663.1| diguanylate cyclase [Spirochaeta thermophila DSM 6578]
          Length = 529

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 111/246 (45%), Gaps = 25/246 (10%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL---VIISITISLLLGYISGSI 89
           +  ++  AT  + A+  L    +TP   L+  L   +S    V ++      +G I+  +
Sbjct: 288 LVVALLAATSGWAASRLLTRHVITPLATLQADLERVISGAPGVPLADYPDNEVGQIAKGV 347

Query: 90  LK----ELFISYN-------RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSI 131
            +    EL+           R+  LS  D L+ + N       L         Y    S+
Sbjct: 348 EQLTRTELYRKNQALKALNTRLEILSTTDPLTSIFNRRKLQEELTREYHRALRYGSPFSL 407

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  D+D+FK IND FGH  GD+V+ + ++ L     +   VGR GGEEF      +   E
Sbjct: 408 ILIDLDHFKTINDTFGHGKGDEVLIWTAEILRTHLRSTDIVGRWGGEEFLVLCPETRLSE 467

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           AA++A+ L K I  +       PS  +TISAG+      + +  ++  AD+ LY AK SG
Sbjct: 468 AALIASKLGKEIARTSPL----PSCRVTISAGVVSFSPGKSLEDLLKEADEKLYRAKGSG 523

Query: 252 RNRVVC 257
           RN V+ 
Sbjct: 524 RNTVIV 529


>gi|313201708|ref|YP_004040366.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688]
 gi|312441024|gb|ADQ85130.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688]
          Length = 783

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 59/200 (29%), Positives = 93/200 (46%), Gaps = 12/200 (6%)

Query: 77  TISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           TI +L GY +   + ++   S   I + +  D L+GL N   F   L         + + 
Sbjct: 310 TIIVLRGYRLKREVARQAAASQKLIWKQANYDFLTGLPNRPMFHKQLAEEIHKSLQHQQP 369

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS- 187
           L ++F D+D FKQIND  GH +GDK++     ++  V      + RLGG+EF        
Sbjct: 370 LVLMFLDLDNFKQINDQLGHSIGDKLLVETGARIAAVARDCTLLARLGGDEFTIVLSNVQ 429

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYV 246
           ++Q+   L   + + +  S         +++T S GIA    H   + T++  ADQA+Y 
Sbjct: 430 NQQQVEWLCERILRQV--SLPFTIENHVVYVTTSIGIASFPEHSRDVETLMKYADQAMYE 487

Query: 247 AKKSGRNRVVCFSDIENNTC 266
           AK+ GRNR   FS       
Sbjct: 488 AKRLGRNRYQFFSPSMQELA 507


>gi|254498802|ref|ZP_05111513.1| hypothetical protein LDG_2883 [Legionella drancourtii LLAP12]
 gi|254351966|gb|EET10790.1| hypothetical protein LDG_2883 [Legionella drancourtii LLAP12]
          Length = 815

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 111/221 (50%), Gaps = 20/221 (9%)

Query: 56  TPFYGLEYILVENLSLVIISITISLLLGYISGS---------ILKELFISYNRISQLSRI 106
           + ++  +  + ++ ++  I +T S+L    SG           + E  I+  +I QL+  
Sbjct: 597 SSYHVEKRQIRKDGTISWIQVTRSILRDTTSGEPIYFILQVEDINERIINREKIYQLAYH 656

Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N    +  L         ++  ++++F D+D FK +ND  GH  GDK++  +S
Sbjct: 657 DILTGLPNRQLLLDRLNQAIASAKHHHRFMALMFVDLDKFKHVNDTLGHDAGDKLLKEMS 716

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHI 218
            +L     +   + R GG+EF       SS Q+AAILA+   KI++   +++     + I
Sbjct: 717 TRLCCSVRSQDTIARTGGDEFVIILTEISSPQDAAILADKFLKIVKK-PLSLQD-QQLQI 774

Query: 219 TISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           T S GIA   +     + ++ +AD A+Y++K +GR+R   +
Sbjct: 775 TASIGIAIYPNNGLDAAELMKKADMAMYMSKDAGRDRWHFY 815


>gi|288940694|ref|YP_003442934.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Allochromatium vinosum DSM 180]
 gi|288896066|gb|ADC61902.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Allochromatium vinosum DSM 180]
          Length = 811

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 10/183 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            L E   +  RI QL+  D L+GL N       L          N + +++F DID FK 
Sbjct: 363 DLSETVEARQRIEQLAFNDALTGLPNRLRLTERLEFSIELARRENTRFAVLFIDIDRFKH 422

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD+V+  ++ ++         + RLGG+EF           A ++A  L +
Sbjct: 423 INDSLGHVFGDRVLIEVAQRIRQCLRHVDTIARLGGDEFVLLLHRVESHGAELVARRLLE 482

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +   Q     G    ++ S GIA      E +  +I  AD A+Y  K+ GR     +  
Sbjct: 483 SMA--QPFELDGLKFSLSCSIGIALYPEDGETLDDLIKNADSAMYHVKEHGRGDCCFYQR 540

Query: 261 IEN 263
             N
Sbjct: 541 QMN 543


>gi|302879651|ref|YP_003848215.1| diguanylate cyclase [Gallionella capsiferriformans ES-2]
 gi|302582440|gb|ADL56451.1| diguanylate cyclase [Gallionella capsiferriformans ES-2]
          Length = 446

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/202 (32%), Positives = 101/202 (50%), Gaps = 18/202 (8%)

Query: 73  IISIT------ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--- 123
           +ISIT      +  L  +  G +++ L  + N++ Q S  D L+G+ N      ++    
Sbjct: 249 LISITYGRWAELMKLHAHELGELVQVLETNNNKLRQESLTDALTGVGNRRMINQAIEAEI 308

Query: 124 -----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                      S++  DID+FK+IND  GHP GD+V+  L   +         + R GGE
Sbjct: 309 GRYYRQERSAFSLLLLDIDHFKKINDTHGHPFGDEVLKSLCLTVKKRLRATDTLARWGGE 368

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EFA     +S   A  LAN +R+ IEN++I   S     +T+S G AE    E +  ++ 
Sbjct: 369 EFAVLLPAASLSAATNLANHIREDIENNKIPAES----SVTVSIGTAEYRRGESLEILLQ 424

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
           R D+ALY AK++GRN V+   D
Sbjct: 425 RVDKALYQAKQNGRNTVIPADD 446


>gi|77458524|ref|YP_348029.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1]
 gi|77382527|gb|ABA74040.1| putative GGDEF domain protein [Pseudomonas fluorescens Pf0-1]
          Length = 533

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 18/210 (8%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRIS-------QLSRIDCLSGLLNHSA 117
           L++N  +++  I +    G I  S L++       I         ++  D L+GL N   
Sbjct: 305 LLKNGFVLVFLILVLACFGLIVLSQLRQRMAMEREIRSAHKTMRDMALTDSLTGLGNRRR 364

Query: 118 FISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTP 169
             ++L             LS++  D+DYFK+ ND +GH  GD  +  + D +   V    
Sbjct: 365 LDAALADEIRLARRQGSPLSLIMLDVDYFKRYNDQYGHAAGDDCLIAVGDGIRKAVKRPS 424

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               R GGEEF      +    A  +A D+ + I + ++  +  P  ++T SAGI  R  
Sbjct: 425 DLAVRYGGEEFTVLLPNTDSAGAIQVAEDILQTIRSLELEHAGHPLGYVTASAGITTRYP 484

Query: 230 KEPI---STIIYRADQALYVAKKSGRNRVV 256
            +     +T++  AD  LY AK+ GRNR  
Sbjct: 485 VDDAVTPATLLKAADTCLYQAKQQGRNRWC 514


>gi|254719129|ref|ZP_05180940.1| GGDEF domain protein [Brucella sp. 83/13]
 gi|265984124|ref|ZP_06096859.1| diguanylate cyclase [Brucella sp. 83/13]
 gi|306838414|ref|ZP_07471259.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653]
 gi|264662716|gb|EEZ32977.1| diguanylate cyclase [Brucella sp. 83/13]
 gi|306406554|gb|EFM62788.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653]
          Length = 264

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 70/234 (29%), Positives = 114/234 (48%), Gaps = 14/234 (5%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY-------ISGSILKE- 92
             +   ++ LF +G T            L  + +S+   L++ +       +    LKE 
Sbjct: 8   AALLTLSVVLFCVGATSITAFWSGETPGLIAISLSLGFPLVMTFPFSAFIFLRYDKLKEA 67

Query: 93  ---LFISYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNF 146
              L  S+  +   +RID ++GLLN  A   ++    S  E  +++  D D+FK IND+F
Sbjct: 68  YAQLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSF 127

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+
Sbjct: 128 GHGVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENT 187

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV   +
Sbjct: 188 PFHTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVVFDEE 241


>gi|163848602|ref|YP_001636646.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222526537|ref|YP_002571008.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus sp. Y-400-fl]
 gi|163669891|gb|ABY36257.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222450416|gb|ACM54682.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus sp. Y-400-fl]
          Length = 324

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 65/174 (37%), Positives = 94/174 (54%), Gaps = 9/174 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           +EL  +  R ++L+R+D L+G+ N S F             Y   L++   D+D+FKQIN
Sbjct: 150 RELQRALAREAELARMDWLTGVYNRSHFYELARHEFAIATRYERPLTMCMLDVDHFKQIN 209

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGD+V+  ++  +     T   +GR GGEEF      ++   A  LA  LR  I
Sbjct: 210 DRYGHLVGDQVLRAVAQTVAHQIRTADSIGRFGGEEFILLLPNTNLPSALTLAERLRVTI 269

Query: 204 ENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
            + Q++   G  +  TIS G+AER      I  +I RAD+ALY AK+ GRN VV
Sbjct: 270 ADLQVHTDRGI-VTATISVGVAERQSTDTTIERLIDRADRALYAAKRQGRNCVV 322


>gi|301383265|ref|ZP_07231683.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato Max13]
 gi|302133478|ref|ZP_07259468.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato NCPPB 1108]
          Length = 1250

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 15/192 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + E   S +RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 799 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQQAERQQAWVVLMFLDLDRFK 858

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAA----IL 195
            IND+ GH  GD+++  ++ +L+        V R+GG+EF        + + A      +
Sbjct: 859 PINDSLGHAAGDRMLQEMATRLLACVSADDTVARMGGDEFTLLLQPDITREAALTRAIHV 918

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
           A  +   +      +  G    +T S GIA        +S ++  AD A+Y AK+ G+N 
Sbjct: 919 AERILTSL--VTPFVLEGREFFVTASIGIALSPQDGSELSKLMKNADTAMYHAKERGKNN 976

Query: 255 VVCFSDIENNTC 266
              +    N T 
Sbjct: 977 FQFYQTDMNATA 988


>gi|170733260|ref|YP_001765207.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3]
 gi|169816502|gb|ACA91085.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3]
          Length = 492

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 14/195 (7%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---- 128
           +  I +SLLLG    S L+    + + +  L+R D L+GL N  +F   L +   +    
Sbjct: 297 VAFIALSLLLG----SQLRRRMRAESELVLLARTDGLTGLSNRRSFGEVLDNEWRRARRA 352

Query: 129 ---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAA 184
               S++F D+D FK  ND +GH  GD  +A ++  +      P     R GGEEF    
Sbjct: 353 RSVFSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTAARYGGEEFVVLL 412

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQ 242
             +S+  AA +A  +R  I+   +  +      +T S G+A    ++      +I  AD+
Sbjct: 413 PDTSQTGAAQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPEQEGQPDAVIKAADE 472

Query: 243 ALYVAKKSGRNRVVC 257
           ALY AK +GRN+V  
Sbjct: 473 ALYYAKATGRNKVAA 487


>gi|114778385|ref|ZP_01453232.1| hypothetical protein SPV1_08206 [Mariprofundus ferrooxydans PV-1]
 gi|114551348|gb|EAU53905.1| hypothetical protein SPV1_08206 [Mariprofundus ferrooxydans PV-1]
          Length = 437

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 53/180 (29%), Positives = 87/180 (48%), Gaps = 11/180 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQ 141
            + E   +  +IS ++  D L+GL N + F   L            ++ ++  D+D FK 
Sbjct: 256 DITERKQAEEKISNMAYHDHLTGLANRALFYDRLQQAGAHLQRNRNRMGMLMLDLDRFKL 315

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           IND  GH  GD+V+  +S +L+    +   V RLGG+EF+   L   SE+    +A  + 
Sbjct: 316 INDELGHEWGDRVLVEVSSRLMRCVRSTDTVARLGGDEFSIILLDVPSEEFVCKMAEKVI 375

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +I  S   +  G    + +S GI       + + T++ +AD A+Y AK+SGRN    F 
Sbjct: 376 TVIGQSL--VLKGGHYEVGVSIGICLASSDDQDMETLVKKADAAMYQAKESGRNCYCIFD 433


>gi|283850974|ref|ZP_06368259.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
 gi|283573620|gb|EFC21595.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
          Length = 427

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 64/212 (30%), Positives = 103/212 (48%), Gaps = 13/212 (6%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISG--SILKELFISYNRISQLSRIDCLSGL 112
           LT    +E      +  ++ ++ + +L   +    +  + L  +   +++L+  D L+G 
Sbjct: 193 LTILRRVELATTVGMLALLAAVGLCILRPMVRRICADRERLEGANEALTELAVTDQLTGA 252

Query: 113 LNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N   F       I   G Y E LS++ FDID FK +ND +GH  GD ++  L+ ++   
Sbjct: 253 YNRLKFNQVMEHEIKRTGRYAEPLSVIMFDIDRFKVVNDTYGHAAGDDMLRELTRRVQAA 312

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                ++ R GGEEF  AA  +   +AA+LA  LR ++  +         I  +IS G+ 
Sbjct: 313 IRAVDWLFRYGGEEFVVAAPHTGRAQAAVLAEKLRALVAGAPFP----HGIAGSISLGVT 368

Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           E    E +  ++ R D ALY AK SGRNRVV 
Sbjct: 369 ELAPGETVEELMQRVDAALYEAKNSGRNRVVV 400


>gi|254515403|ref|ZP_05127464.1| GGDEF domain protein [gamma proteobacterium NOR5-3]
 gi|219677646|gb|EED34011.1| GGDEF domain protein [gamma proteobacterium NOR5-3]
          Length = 540

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 84/186 (45%), Gaps = 11/186 (5%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLS 130
           +S  L        +EL      +  L+ +D L+   N  A              Y   LS
Sbjct: 345 LSRTLEAKVTQRTRELEAKNEELDHLASVDKLTDTFNRRALDKALLAELERADRYQRPLS 404

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           I+  DID FKQ+ND +GH  GDKV+  LS  +         +GR GGEEF      +  +
Sbjct: 405 ILLMDIDLFKQVNDEYGHLTGDKVLVTLSQTIRENLRASDILGRWGGEEFLVICPETDLE 464

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +A  +A  +R+ IE +   +       ITIS G++         +++  AD+ALY AK  
Sbjct: 465 QARNVAEKVRQAIEGTDFELGK----TITISIGLSVLIEGTSAESLVAEADKALYQAKSQ 520

Query: 251 GRNRVV 256
           GRNRV 
Sbjct: 521 GRNRVC 526


>gi|242278703|ref|YP_002990832.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens
           DSM 2638]
 gi|242121597|gb|ACS79293.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens
           DSM 2638]
          Length = 383

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 78/174 (44%), Gaps = 7/174 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           ++L  S  R   LS  D L+GL N    +                LSI+  D+D FK  N
Sbjct: 207 QKLKESEERFKNLSITDQLTGLFNRRHMLDVAEKEIFKSRNTGHPLSIMLMDVDDFKMFN 266

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD ++  +   +           R GGEEF      ++  EA  +A ++R  +
Sbjct: 267 DTYGHAAGDDILEAIGKIIKNNIRATDKAFRYGGEEFMVILPETNGLEAIKVAENIRIAL 326

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              + +   G  IH TIS G+AE  + E +  +I RAD  +Y  K  G+NRV  
Sbjct: 327 AEYEYHPKEGSPIHKTISIGVAEFTNDESLEKVIKRADDNMYRCKIKGKNRVYF 380


>gi|254457279|ref|ZP_05070707.1| signal transduction response regulator-chey like receiver and ggdef
           domain [Campylobacterales bacterium GD 1]
 gi|207086071|gb|EDZ63355.1| signal transduction response regulator-chey like receiver and ggdef
           domain [Campylobacterales bacterium GD 1]
          Length = 534

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 21/227 (9%)

Query: 50  LFYIGLTPFYGLEYILVENLSLV--IISITISLLLGY--------ISGSILKELFISYNR 99
           + ++    FY  +  +++N+S+V  I+ + +SL +          I  S   +L I    
Sbjct: 310 ILFVKNLNFYTDKLDMIKNISIVSGIVLLLLSLYMMRKIFNNYINIVNSYQSKLEIKNRT 369

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L  +D L+ + N  +        +     YN +LS++ FDID FK IND +GH +GD
Sbjct: 370 LLKLVNVDHLTKIHNRKSIETILIKELKRAKRYNHELSLIIFDIDNFKNINDTYGHNIGD 429

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KV+  ++  +        + GR GGEEF   +  +S   A ++A  +R+ I       + 
Sbjct: 430 KVLKSIAKVVANSIRESDYFGRWGGEEFIVISTETSMDNALLVAEKIRESISTYDFEEAE 489

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                IT S G+AE   ++   +I++ AD ALY AK SG+NRV+   
Sbjct: 490 ----KITCSIGVAEYTSEDTHQSIVHNADTALYKAKHSGKNRVIFHE 532


>gi|167569542|ref|ZP_02362416.1| GGDEF domain protein [Burkholderia oklahomensis C6786]
          Length = 454

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 114/248 (45%), Gaps = 19/248 (7%)

Query: 28  MIYFSIFFSIFIATVIFIANIFL-FYIGLTPFYGLEYILVENLSLVIISITI---SLLLG 83
           +++F++    FI    +    +L   I  + F+ L + +V+ L       T+     L+ 
Sbjct: 207 VMWFALSSVAFILGKPWNHMWWLAHAIFASGFFLLSFGVVQALMTSRSFSTVYSQQDLMA 266

Query: 84  YISGSI------LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LS 130
            ++ S+      L+EL  +  ++  L+  D L+G  N   FI  + +   +        S
Sbjct: 267 RLAESMARTEGALQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQAEIARAKRDGTAFS 326

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D FK INDN+GH VGD V+     Q +        + R+GGEEF          
Sbjct: 327 LLALDLDNFKTINDNYGHQVGDVVLRNFVRQCLTAIRPYDHIARVGGEEFMVLLPRMLAD 386

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
            A+ +A  +R  I N+   I  G    +T+S G+++     + +  I+  AD+ LY AK 
Sbjct: 387 AASGIAERVRTSIANASFGI-DGRHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKH 445

Query: 250 SGRNRVVC 257
            GRNRVV 
Sbjct: 446 EGRNRVVA 453


>gi|289208760|ref|YP_003460826.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
 gi|288944391|gb|ADC72090.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
          Length = 706

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 92/191 (48%), Gaps = 10/191 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFF 134
           L Y +   + +   S   I+  +  D L+ L N + F       I+        L+++F 
Sbjct: 253 LVYGTARDITDRKESEAFINFQAYHDLLTRLPNRALFRDRVDVAIAQAQRQGHPLAVMFI 312

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D++ FK IND+ GH +GD+++  ++ +L+        + R GG+EF       S QEAA+
Sbjct: 313 DLNRFKVINDSLGHTIGDRLLQAVAQRLLGCIRKGDTLSRFGGDEFTLLLPQISRQEAAV 372

Query: 195 -LANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGR 252
            +A  + + + N   ++     +++  S GIA      + + T+I  AD A+Y  K +G+
Sbjct: 373 DVAEKILESL-NEPFHLGGDHELYVGASIGIAIYPEGGDTLETLIRHADIAMYREKNTGK 431

Query: 253 NRVVCFSDIEN 263
           N +  F+   +
Sbjct: 432 NGIRLFAPEMH 442


>gi|224367366|ref|YP_002601529.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223690082|gb|ACN13365.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 339

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 89/175 (50%), Gaps = 9/175 (5%)

Query: 91  KELFISYNRI---SQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQIN 143
           +EL     ++    + +  D L+GLLN   F S L            ++  DID+FK++N
Sbjct: 160 QELASLRKKLDVSKKDAETDALTGLLNRRGFESRLHPLLKDPQSCFCLIMIDIDHFKRVN 219

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGD ++  L++ L         + R GGEEF      +  ++A  +A D+RK +
Sbjct: 220 DTYGHLVGDSILKALANLLKQQTKGKDCLARFGGEEFIILLPETRLEQAGAVAEDIRKKL 279

Query: 204 ENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              +     +  P   ITIS G+ +    E   T+I+R D ALY AK++GRNRVV
Sbjct: 280 AAQEWKQRKTGKPMGKITISLGVTQYRPNESEVTLIHRVDTALYTAKRNGRNRVV 334


>gi|53724041|ref|YP_104559.1| GGDEF domain-containing protein [Burkholderia mallei ATCC 23344]
 gi|76810683|ref|YP_332955.1| GGDEF domain-containing protein [Burkholderia pseudomallei 1710b]
 gi|121600931|ref|YP_992557.1| GGDEF domain-containing protein [Burkholderia mallei SAVP1]
 gi|126441685|ref|YP_001058461.1| diguanylate cyclase [Burkholderia pseudomallei 668]
 gi|126454383|ref|YP_001065722.1| diguanylate cyclase [Burkholderia pseudomallei 1106a]
 gi|217423756|ref|ZP_03455257.1| diguanylate cyclase [Burkholderia pseudomallei 576]
 gi|242315781|ref|ZP_04814797.1| diguanylate cyclase [Burkholderia pseudomallei 1106b]
 gi|251767734|ref|ZP_04820230.1| diguanylate cyclase [Burkholderia mallei PRL-20]
 gi|254188320|ref|ZP_04894831.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237]
 gi|52427464|gb|AAU48057.1| GGDEF domain protein [Burkholderia mallei ATCC 23344]
 gi|76580136|gb|ABA49611.1| GGDEF domain protein [Burkholderia pseudomallei 1710b]
 gi|121229741|gb|ABM52259.1| GGDEF domain protein [Burkholderia mallei SAVP1]
 gi|126221178|gb|ABN84684.1| diguanylate cyclase [Burkholderia pseudomallei 668]
 gi|126228025|gb|ABN91565.1| diguanylate cyclase [Burkholderia pseudomallei 1106a]
 gi|157935999|gb|EDO91669.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237]
 gi|217393614|gb|EEC33635.1| diguanylate cyclase [Burkholderia pseudomallei 576]
 gi|242139020|gb|EES25422.1| diguanylate cyclase [Burkholderia pseudomallei 1106b]
 gi|243061853|gb|EES44039.1| diguanylate cyclase [Burkholderia mallei PRL-20]
          Length = 466

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 10/228 (4%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           ++A  +F    F+   G+              S   +   ++  +    G +L+EL  + 
Sbjct: 240 WLAHAVFAGGFFMLSFGVVQALMTTRSFATVYSQQDLMARLAESMARTEG-VLQELKRTN 298

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
            ++  L+  D L+G  N   FI  + S   +        S++  D+D FK INDN+GH V
Sbjct: 299 QKLEHLATTDPLTGASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFKTINDNYGHQV 358

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+     Q +        + R+GGEEF           A+ +A  +R  I N+   I
Sbjct: 359 GDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRTTIANASFGI 418

Query: 211 SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV 
Sbjct: 419 -DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 465


>gi|330874570|gb|EGH08719.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 677

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 86/184 (46%), Gaps = 11/184 (5%)

Query: 82  LGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           L     S+ +E      +     Q + ID L+GL N +A+   L             L +
Sbjct: 492 LASRVASMEQEALGFRTNLEEQRQKALIDPLTGLPNRAAWGERLEQEMADWQREKNSLLV 551

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK+IND +GH  GDKV+  +++          F+ R GGEEF      +    
Sbjct: 552 CILDLDHFKRINDGYGHLAGDKVLKIVANVFKKRLRPADFLARFGGEEFVMLLPATPPGT 611

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              L ++LR  +E    +   G  + IT+S G+      E   T I RADQALY AK++G
Sbjct: 612 GLTLLDELRTAVELCPFHFK-GERVTITVSIGVTALRTGERSDTAIKRADQALYKAKENG 670

Query: 252 RNRV 255
           RNRV
Sbjct: 671 RNRV 674


>gi|325292659|ref|YP_004278523.1| Response regulator pleD [Agrobacterium sp. H13-3]
 gi|325060512|gb|ADY64203.1| Response regulator pleD [Agrobacterium sp. H13-3]
          Length = 456

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 90/191 (47%), Gaps = 14/191 (7%)

Query: 81  LLGYISGSILKELFISYNRIS-----QLSRIDCLSGLLNHSAFISSL-------GSYNEK 128
           L+      I ++ +  + R++     +L+ +D L+GL N     + L             
Sbjct: 263 LVARSLTQIRRKRYNEHLRLNLQHTMELAIVDGLTGLNNRRYLDNHLKILFDRAAVRGRP 322

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +SI   DID FK +ND +GH VGD+V+   + ++           R GGEEF      + 
Sbjct: 323 ISICMTDIDRFKLVNDTYGHDVGDEVLREFAARIRSTVRGADLACRYGGEEFVVVMPDTP 382

Query: 189 EQEAAILANDLRKIIENSQINISS-GPSIHITISAGIAERCHK-EPISTIIYRADQALYV 246
            + A  +A  LR IIE+   ++ S    + IT S GIA           ++ +AD+ALY 
Sbjct: 383 MELATSVAERLRAIIEDKPFHVRSIDRELSITASLGIATSSGAFGAPDELLKQADRALYE 442

Query: 247 AKKSGRNRVVC 257
           AK +GRNRVV 
Sbjct: 443 AKHTGRNRVVA 453


>gi|302344708|ref|YP_003809237.1| diguanylate cyclase [Desulfarculus baarsii DSM 2075]
 gi|301641321|gb|ADK86643.1| diguanylate cyclase [Desulfarculus baarsii DSM 2075]
          Length = 691

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 10/169 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+S ++  D L+GL     F+ +L          +  LS++  D D+FK +ND  GH  G
Sbjct: 512 RLSHMASTDGLTGLFTRRHFVDTLEHELRVARYLHYPLSMLLLDADHFKNVNDTHGHQAG 571

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  L+  +V    +     R+GGEEFA       + +A  LA  +R+ +    + I 
Sbjct: 572 DEVLRALARVIVENIRSSDTCARIGGEEFAVLLPRCQQDQAFKLAEKIRRKVGELTV-IY 630

Query: 212 SGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCF 258
           +   I +TIS G+A     +   I  +I RAD A+Y +K +GRNR   +
Sbjct: 631 NEKQIKLTISLGVASFNPGDEPSIEEVIRRADLAMYQSKAAGRNRTTVW 679


>gi|299534196|ref|ZP_07047547.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298717843|gb|EFI58849.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 456

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 15/222 (6%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLLLGYI-----SGSILKELFISYNRISQLSR 105
           F I +   +   Y +    +L+I S+  +L + +I      G  LK    + + ++ L+R
Sbjct: 229 FIIMVAKAHSDIYAVWRQRALLIASVMGTLTMAFIGLSFAFGVQLKRRMRAESELALLAR 288

Query: 106 IDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+GL N                  +   S++F DID+FK  ND +GH  GD V+A +
Sbjct: 289 TDGLTGLNNRRKLDEIIEHEWHRAKRSHSAFSLLFVDIDWFKAYNDTYGHQAGDMVLATV 348

Query: 159 SDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +  +      P     R GGEEF      ++    A++A ++R+ +    I  +      
Sbjct: 349 ARCIASNIRRPEDSAARYGGEEFIVVLPDTTLDGGALIAENIREAVSELAIAHTGSEFGC 408

Query: 218 ITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVC 257
           IT+S G A     + +    ++  AD+ALY AK +GRN+VV 
Sbjct: 409 ITVSIGCAAWVPGKDLDVQEVLRSADKALYGAKMTGRNKVVL 450


>gi|90023067|ref|YP_528894.1| putative diguanylate cyclase (GGDEF) [Saccharophagus degradans
           2-40]
 gi|89952667|gb|ABD82682.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 368

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 70/263 (26%), Positives = 118/263 (44%), Gaps = 22/263 (8%)

Query: 14  CHE---KNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           CH      L +++P     Y  + +   ++ + F   +      L    G  +  +E  S
Sbjct: 110 CHAVIASKLVNYTPFAPEAYLGVVWIFVVSGMTFRYALISAITALCILAGSAFYFIEQQS 169

Query: 71  ---LVIISITISLLLGYISGSIL----KELFISYNRISQLSRIDCLSGLLNHSAF----- 118
              + +  +  S   G++   +L    K+ F+S   +  L+  D L+GL N +       
Sbjct: 170 SYVMHVFWLACSFSFGFLGALMLDRSRKQFFVSQQELQHLAVTDPLTGLYNRNQLNIVLN 229

Query: 119 --ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
             ++    YN    ++  D+D+FK IND+FGH  GD V+  +S  L+        V R G
Sbjct: 230 KEMAREQRYNRSFGLLVIDVDFFKSINDSFGHEAGDNVLKQISQDLLQSVRKIDTVIRWG 289

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236
           GEEF   A    +Q    L+ +L K IE S+ N        +T+S G       +  S +
Sbjct: 290 GEEFIVVASEVDKQSIVALSENLCKKIEGSEFNGVG----RVTVSIGATLYKLDDTPSDL 345

Query: 237 IYRADQALYVAKKSGRNRVVCFS 259
           + RAD+ALY AK++GRN +  ++
Sbjct: 346 LSRADKALYKAKETGRN-IAIYT 367


>gi|34497763|ref|NP_901978.1| hypothetical protein CV_2308 [Chromobacterium violaceum ATCC 12472]
 gi|34103619|gb|AAQ59980.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 679

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 11/186 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQI 142
           ++E   +  R+  L+  D L+GL N   F   L            KL+++F D+D FK +
Sbjct: 232 IQERRRAEERLDHLAHHDPLTGLPNRLLFQKRLSRALSVPDLPPYKLAMLFIDLDRFKDV 291

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRK 201
           ND  GH +GD+++  ++ +L         + RLGG+EF         ++ AA +A  L  
Sbjct: 292 NDTLGHYIGDQLLNAVAARLADSIRAEDMLARLGGDEFICVLESIENRDMAADVAGKLLA 351

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +    Q    +G  ++++ S GI+        + T++  AD A+Y AK +GRNR   +S 
Sbjct: 352 LFR--QPFCINGNDLYLSASIGISFAGNDGADVDTLLRHADIAMYSAKNAGRNRCQHYSP 409

Query: 261 IENNTC 266
             +   
Sbjct: 410 QMSEDA 415


>gi|299068784|emb|CBJ40024.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum CMR15]
          Length = 488

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 103/234 (44%), Gaps = 21/234 (8%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           + +F+A      +I+  +     + G+         LV++   ++L + Y+    L+   
Sbjct: 263 YPLFVAVGTATEDIYANWKARAWWIGM---------LVVLFNVVTLAMAYLFAQHLERRI 313

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
               R ++L+  D L+GL N  A    L           + LS++  D+D+FK  ND++G
Sbjct: 314 EEQRRHAELAATDALTGLANRRALDERLDAEWRRAARERQPLSVLMIDVDHFKAYNDHYG 373

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           HP GD  +  ++  +      P  +  R GGEEF     GS    A+++A  +R  I   
Sbjct: 374 HPDGDAALQAVARCIQANLRRPGDLATRYGGEEFCVVLPGSDLDSASVVAETIRHAILVL 433

Query: 207 QINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVV 256
            I  +   S  +T+S G A            +T+   AD  LY AK SGRNR +
Sbjct: 434 NIPHARSASAVLTVSIGAASGMPASSGEQRAATLTRAADAQLYRAKTSGRNRTM 487


>gi|78777843|ref|YP_394158.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78498383|gb|ABB44923.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM
           1251]
          Length = 580

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 89/174 (51%), Gaps = 12/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQI 142
            EL  +Y ++ QL+  D L+ + N  +F++   S  E+         S++  DID+FK+I
Sbjct: 409 TELRDAYEKMRQLANTDSLTQINNRFSFLNQFNSLLERYSKESKAEFSLIMIDIDFFKKI 468

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND++GH VGD VI  ++             GR+GGEEF    L +S + A   A  +RK 
Sbjct: 469 NDSYGHHVGDYVIVEVTKLTKACLRESDIFGRVGGEEFMVLLLHTSLEAAKETAQRIRKT 528

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           I+  +         H T+S G+    +KE  + ++ R D ALY AK  GRNRV 
Sbjct: 529 IDEYKFEFIG----HATVSIGVISYDNKEKSADMLKRVDIALYEAKNGGRNRVC 578


>gi|27380975|ref|NP_772504.1| hypothetical protein bll5864 [Bradyrhizobium japonicum USDA 110]
 gi|27354141|dbj|BAC51129.1| bll5864 [Bradyrhizobium japonicum USDA 110]
          Length = 799

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 59/189 (31%), Positives = 89/189 (47%), Gaps = 10/189 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYF 139
           +   + E   +  +IS ++R D L+GL N   F   L          ++L+++  D+D+F
Sbjct: 355 TFEDITEWLEAQAKISHMARHDALTGLPNRVLFHEQLEQGLRRTGSGDQLAVLCLDLDHF 414

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LAND 198
           K IND+ GHP+GD ++  +  +L    G    V RLGG+EFA   +G SE+ AA  LA  
Sbjct: 415 KDINDSLGHPIGDALLKEVGRRLKATVGESDTVARLGGDEFAVVQIGRSEEAAARCLAGR 474

Query: 199 LRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L ++I  S         I I +S GI+           ++  AD ALY AK  GR     
Sbjct: 475 LVEVI--SAPYEIDDHQIVIGVSIGISLSPQDGSNADELLKNADLALYRAKADGRGTYRF 532

Query: 258 FSDIENNTC 266
           F    +   
Sbjct: 533 FETGMDARA 541


>gi|313681541|ref|YP_004059279.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313154401|gb|ADR33079.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 482

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 62/166 (37%), Positives = 88/166 (53%), Gaps = 8/166 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
             ++  ++R D L+GL+N  AF  S           N+ LS++FFDID FK IND  GH 
Sbjct: 312 NEKLEFMARNDALTGLMNRHAFDDSFNDFLLLSQRNNDPLSLIFFDIDNFKTINDTLGHQ 371

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  +S+ L         +GR GGEEF    + +  + A ++A  LRK IE     
Sbjct: 372 AGDNVLIRISELLKTRLRRTDIIGRWGGEEFIIGLINTDYKNAEVIAETLRKAIEEDSRL 431

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           I   P   +T S G+A     + I TI+ RAD A+Y AK+ G+NR+
Sbjct: 432 IHLAP-FPVTASFGVATVRTGDTIETILTRADSAMYRAKELGKNRI 476


>gi|311692959|gb|ADP95832.1| sensory box/FOG: EAL domain/GGDEF domain containing protein [marine
           bacterium HP15]
          Length = 1162

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 11/180 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E       ++  +  D L+GL N S F   L         +++ ++++F D+D FK 
Sbjct: 714 DISEKKEQDEEMAYQATHDLLTGLANRSLFNDRLKHDFELAKRHSQSMAVLFIDLDEFKP 773

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLR 200
           IND  GH VGDK++  ++++L  +      + R GG+EF        E   A  +A  + 
Sbjct: 774 INDTLGHRVGDKLLVSVAERLNSLIRPSDTLARFGGDEFVLLLPDLEETGLAEEIAERIL 833

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFS 259
           +  E ++ +      +HI+ S GIA   H       ++ RAD A+Y AK+ GR+    +S
Sbjct: 834 Q--ELAKPHQIDNNELHISASIGIATNSHSSRFPEKLLQRADMAMYKAKQQGRDTYEIYS 891


>gi|158338091|ref|YP_001519267.1| PAS sensor diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158308332|gb|ABW29949.1| PAS sensor diguanylate cyclase, putative [Acaryochloris marina
           MBIC11017]
          Length = 600

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 60/192 (31%), Positives = 96/192 (50%), Gaps = 14/192 (7%)

Query: 80  LLLGYISGSIL---KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKL 129
           L L Y + ++L   ++L I+   + +L+ +D L+ + N   F S        L    + L
Sbjct: 132 LELQYKNTTLLALSEQLEIANRELERLATMDGLTRVYNRRQFDSVFEREWHRLCREEQPL 191

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSS 188
           S++  D+D+FK  ND +GH  GD+ +  ++  +  +       V R GGEEF      + 
Sbjct: 192 SVILGDVDHFKAYNDAYGHQAGDQCLQQVAQAIARIAQRPADCVARYGGEEFVVLLPNTD 251

Query: 189 EQEAAILANDLRKIIENSQINI-SSGPSIHITISAGIAERCHKEPI--STIIYRADQALY 245
              A  +A  +R+ +E   I   +S  S HI++S G+A     E I  S++I  ADQALY
Sbjct: 252 LSGALHVAEAIREEVEELNIPHRNSSVSKHISLSLGVASLIPNEDIPASSLIQSADQALY 311

Query: 246 VAKKSGRNRVVC 257
            AK  GRN+V  
Sbjct: 312 TAKDLGRNQVTA 323


>gi|298485208|ref|ZP_07003301.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298160196|gb|EFI01224.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 686

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 60/184 (32%), Positives = 88/184 (47%), Gaps = 11/184 (5%)

Query: 82  LGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSI 131
           L     S+ +E            Q + ID L+GL N +A+   L     K       L +
Sbjct: 501 LSARVASMEQEALGFRTHLEEQRQKALIDPLTGLPNRAAWGERLEQEMSKWQHEKNSLLV 560

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK+IND +GH  GDKV+  +++       +  F+ R GGEEF      +    
Sbjct: 561 CILDLDHFKRINDGYGHLAGDKVLKIVANVFRKRLRSDDFLARFGGEEFVMLLPATPPGT 620

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              L ++LR  +E+   +   G  + IT+S G+      E   T I RADQALY AK++G
Sbjct: 621 GLTLLDELRTAVESCPFHFK-GERVTITVSIGVTAFRTAERSDTAIKRADQALYKAKENG 679

Query: 252 RNRV 255
           RNRV
Sbjct: 680 RNRV 683


>gi|229591014|ref|YP_002873133.1| putative GGDEF domain signaling protein [Pseudomonas fluorescens
           SBW25]
 gi|229362880|emb|CAY49790.1| putative GGDEF domain signaling protein [Pseudomonas fluorescens
           SBW25]
          Length = 547

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 82/179 (45%), Gaps = 13/179 (7%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
                +L  +   + +L+  D L+G+ N   F   L              +++  D DYF
Sbjct: 373 AQRTADLTQANAELLKLATHDALTGVYNRRRFDEKLAENSLLFQRTGRTFALLLIDADYF 432

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILAND 198
           K++ND++GH +GD V+  L+  +        FV R GGEEFA       E ++  ++A  
Sbjct: 433 KRVNDSYGHAIGDDVLCQLAALIKNTTRATDFVARYGGEEFAVLLPEVEEPDSPDVVAEK 492

Query: 199 LRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +R  +E +          H+T+S G+          S ++ RAD  LY AK +GRNRV 
Sbjct: 493 IRVAVEAAVFPTVG----HVTVSIGVGVAEPSDRDTSALLKRADMQLYEAKAAGRNRVA 547


>gi|254457588|ref|ZP_05071016.1| GGDEF domain/pas/pac sensor domain protein [Campylobacterales
           bacterium GD 1]
 gi|207086380|gb|EDZ63664.1| GGDEF domain/pas/pac sensor domain protein [Campylobacterales
           bacterium GD 1]
          Length = 396

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 95/177 (53%), Gaps = 11/177 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
           + + +   ++ ++S+L+  D L+G+ N   F          +  Y  KLS +FFDID+FK
Sbjct: 223 TDISKEKSNHEKLSKLAYFDNLTGIYNRRKFDEILKIETIRVHRYKRKLSALFFDIDHFK 282

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GH  GD+V+  +S+ + +      +  R GGEEF      ++  EA ++A  +R
Sbjct: 283 NVNDTYGHDTGDEVLKKMSNIIQLHTRDTDYFARWGGEEFILLLPETNVLEANLMAEKIR 342

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           K I +   N       ++TIS G++E   KE  ST + R D+ALY AK  GRNR + 
Sbjct: 343 KTIFSYDFNKVG----NLTISIGVSELKEKERSSTFLKRLDKALYKAKNDGRNRTIV 395


>gi|197119303|ref|YP_002139730.1| diguanylate cyclase heme-binding site [Geobacter bemidjiensis Bem]
 gi|197088663|gb|ACH39934.1| diguanylate cyclase, putative heme-binding site [Geobacter
           bemidjiensis Bem]
          Length = 432

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 11/173 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           L+EL  +   +   +  D ++G+LN       L         Y   L+++FFD+D FK I
Sbjct: 253 LQELKQANALLQSQATTDPVTGILNRRKCCELLESAIMESKRYGLPLALIFFDVDRFKSI 312

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD V+  L+  +  +        R GGEEF      +  + A +LA  +R  
Sbjct: 313 NDTYGHDAGDSVLRELAGLVSGMIRKTDIFSRFGGEEFVLVVHNNDGRTARMLAEKIRSR 372

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +              +T S G+A     +   +++ RADQA+Y AK +GRNRV
Sbjct: 373 VSQHSFIHVG----QVTASFGVARLYPDDSAESLVKRADQAMYSAKHAGRNRV 421


>gi|134283392|ref|ZP_01770092.1| ggdef domain protein [Burkholderia pseudomallei 305]
 gi|134245141|gb|EBA45235.1| ggdef domain protein [Burkholderia pseudomallei 305]
          Length = 454

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 104/236 (44%), Gaps = 20/236 (8%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY-----ISGSI 89
            + ++A  +F    F+        +G+   L+   S   +     L+         +   
Sbjct: 225 HTWWLAHAVFAGGFFMLS------FGVVQALMTTRSFATVYSQQHLMARLDEAMARTDVA 278

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           LKEL  +  ++  L+  D L+G  N   FI  + S   +        S++  D+D FK I
Sbjct: 279 LKELQHTNQKLEYLASTDPLTGASNRRKFIEQMQSEIARAKCDGTAFSLLALDLDNFKTI 338

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           NDN+GH +GD V+     + V        + R+GGEEF           A+ +A  +R  
Sbjct: 339 NDNYGHQIGDVVLRNFVRRCVAAIRPCDHIARVGGEEFMVLLPRMFADAASEIAERVRAA 398

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I N+   I  G  I +T+S G+++     + +  II  AD+ LY AK  GRNRVV 
Sbjct: 399 IANASFGI-GGKRIGVTVSIGVSQYGRDGDTLDDIINAADKLLYRAKNEGRNRVVI 453


>gi|126664441|ref|ZP_01735425.1| Putative diguanylate cyclase (GGDEF domain) [Marinobacter sp.
           ELB17]
 gi|126630767|gb|EBA01381.1| Putative diguanylate cyclase (GGDEF domain) [Marinobacter sp.
           ELB17]
          Length = 588

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 110/236 (46%), Gaps = 14/236 (5%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
           +   F    +A+V+  +       G+ P+  L Y  V+ + +++ +I + L L      +
Sbjct: 344 FARYFMLGTLASVVGASITASTVTGMIPYTQLGYYAVD-IGMIVDAILLMLAL----ADL 398

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQI 142
           +++   +     Q ++ D L+GL N   F+       S +   N  + +   DID FK I
Sbjct: 399 VRKNEEARTAAEQNAQTDLLTGLSNRRGFLPVAESLWSLVTRKNRNVCVAMIDIDRFKNI 458

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH VGDKV+  ++D+L         + R GGEEF      +SE EA  +A   R  
Sbjct: 459 NDQYGHAVGDKVLKVIADELYRSRRRGDLLARWGGEEFTLLLPETSEAEALKVAERFRHN 518

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           IE   +    G  I  TIS G+  R  +   +   I RAD+ LY AK  GRN+V  
Sbjct: 519 IEQL-VTNDRGRVIQCTISIGVTSRHSEHVTLDQAIARADEELYRAKLQGRNQVSF 573


>gi|34495997|ref|NP_900212.1| hypothetical protein CV_0542 [Chromobacterium violaceum ATCC 12472]
 gi|34330278|gb|AAQ58219.2| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 633

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 11/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           + + E      R+  ++  D L+ L N       L          + +L+++F D+D+FK
Sbjct: 184 TDISERKEQEARVQHMAEYDALTDLPNRVLVNDRLHQAIRQAELQHNQLAVLFVDLDHFK 243

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
            IND  GH  GD+++  ++ +L         VGR GG+EF       ++  EAA +A  +
Sbjct: 244 NINDTLGHCAGDELLKEVARRLAGAVRGLDTVGRTGGDEFVLILPSINQPGEAAQIAERI 303

Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + I+  Q       S+ +  S GI+        I T++  AD A+Y AK  GRN    +
Sbjct: 304 LRTIQ--QPFQIGEHSLVVGCSIGISLMPDDGSDIQTLLMNADLAMYHAKAHGRNTFRFY 361

Query: 259 SDIEN 263
           +   N
Sbjct: 362 TREMN 366


>gi|16331870|ref|NP_442598.1| PleD-like-protein [Synechocystis sp. PCC 6803]
 gi|1001789|dbj|BAA10669.1| slr0302 [Synechocystis sp. PCC 6803]
          Length = 768

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 95/209 (45%), Gaps = 18/209 (8%)

Query: 67  ENLSLVIISITISLLLGYISGSILK----ELFIS------YNRISQLSRIDCLSGLLNHS 116
           E L L+ +      +L  I   + K    +L ++        ++ + S  D L+ L N  
Sbjct: 553 ETLGLLFLCTFKGEILPDIRQQLAKTVAEQLALAIANLKLREQLEEQSLRDPLTKLFNRR 612

Query: 117 AFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
                L         ++  + ++  D+D+FK+ ND+ GH  GD+++A +   L     T 
Sbjct: 613 YLEQRLSQELARAKRHHYSVGVLMIDVDHFKRFNDSLGHDAGDRILASIGTLLKNNIRTS 672

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC- 228
               R GGEE       ++ +EA+  A  LR+ I   +I  S      +T S G+A    
Sbjct: 673 DVACRYGGEEITIILPDATLEEASQKAEFLRQAIAEMKIEYSGKIVNSVTASFGVACYPD 732

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           H E    II  AD+ALY AK++GRNRV+ 
Sbjct: 733 HGETGQEIIQIADKALYDAKQAGRNRVIV 761


>gi|312963150|ref|ZP_07777635.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
            with PAS/PAC sensor(s) [Pseudomonas fluorescens WH6]
 gi|311282661|gb|EFQ61257.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
            with PAS/PAC sensor(s) [Pseudomonas fluorescens WH6]
          Length = 1283

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 15/192 (7%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            S + E   S  RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 832  SDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQAAERQKSWVVLMFLDLDRFK 891

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-----LGSSEQEAAIL 195
             IND+ GH  GD+++  ++ +L+        V R+GG+EF            +   A  +
Sbjct: 892  PINDSLGHAAGDRMLKEMATRLLGCVAEDDTVARMGGDEFTLLLQPRVNREMALNRAIHV 951

Query: 196  ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            A  +   +   +  +  G    +T S GIA        +S ++  AD A+Y AK+ G+N 
Sbjct: 952  AEQILASL--VKPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKERGKNN 1009

Query: 255  VVCFSDIENNTC 266
               +    N + 
Sbjct: 1010 FQFYQADMNASA 1021


>gi|229592709|ref|YP_002874828.1| putative sensory box GGDEF/EAL domain-containing protein [Pseudomonas
            fluorescens SBW25]
 gi|229364575|emb|CAY52459.1| putative putative sensory box GGDEF/EAL domain protein [Pseudomonas
            fluorescens SBW25]
          Length = 1283

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 15/192 (7%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            S + E   S  RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 832  SDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQSAERQKSWVVLMFLDLDRFK 891

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-----LGSSEQEAAIL 195
             IND+ GH  GD+++  ++ +L+        V R+GG+EF            +   A  +
Sbjct: 892  PINDSLGHAAGDRMLKEMATRLLGCVAEDDTVARMGGDEFTLLLQPRISREMALNRAIHV 951

Query: 196  ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            A  +   +   +  +  G    +T S GIA        +S ++  AD A+Y AK+ G+N 
Sbjct: 952  AEQILASL--VKPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKERGKNN 1009

Query: 255  VVCFSDIENNTC 266
               +    N + 
Sbjct: 1010 FQFYQADMNASA 1021


>gi|75675624|ref|YP_318045.1| response regulator PleD [Nitrobacter winogradskyi Nb-255]
 gi|74420494|gb|ABA04693.1| response regulator receiver modulated diguanylate cyclase
           [Nitrobacter winogradskyi Nb-255]
          Length = 457

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 59/165 (35%), Positives = 83/165 (50%), Gaps = 9/165 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N     S L +         + L+++  DIDYFK INDN+GH  GD V
Sbjct: 290 EMAVTDGLTGLHNRRYMESHLTTLAEQASLRGQSLALMMLDIDYFKAINDNYGHDAGDDV 349

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   + ++           R GGEEF      +    A ++A  LR+ I     +I  G 
Sbjct: 350 LREFALRIRKAIRGIDLACRYGGEEFVIVMPETDLHVAGMVAERLRRAIAGEPFSIHKGT 409

Query: 215 S-IHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
             I +TIS G++      EPIS ++ RAD ALY AK  GRNRVV 
Sbjct: 410 KLIKVTISIGLSTLERKGEPISDVVKRADVALYRAKHDGRNRVVA 454


>gi|53804176|ref|YP_113988.1| sensory box protein [Methylococcus capsulatus str. Bath]
 gi|53757937|gb|AAU92228.1| sensory box protein [Methylococcus capsulatus str. Bath]
          Length = 965

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 10/187 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           + + E   +  +I  LS  D L+GL N + F + L           +++++V  D+D FK
Sbjct: 518 TDISEFKRAEAQIRYLSYHDDLTGLPNRAYFQARLDQLIEAAARDRKQIALVVLDLDRFK 577

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND+ GH VGD+++  +++++    G   FV R GG+EF      S    AA +AN + 
Sbjct: 578 TINDSLGHSVGDELLCQVAERIQDCTGQGDFVARQGGDEFVVILADSDAVRAARVANAMI 637

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
             I   +  ++ G ++ +T S GI+   H      ++I  AD A+Y AK  GRN    FS
Sbjct: 638 SAIA--KPAVAGGRTLIVTPSLGISLYPHDAGDSESLIKSADAAMYHAKSLGRNTYQFFS 695

Query: 260 DIENNTC 266
              +   
Sbjct: 696 AEMSAVA 702


>gi|331018900|gb|EGH98956.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 1250

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 15/192 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + E   S +RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 799 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQQAERQQAWVVLMFLDLDRFK 858

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAA----IL 195
            IND+ GH  GD+++  ++ +L+        V R+GG+EF        + + A      +
Sbjct: 859 PINDSLGHAAGDRMLQEMATRLLACVSADDTVARMGGDEFTLLLQPDITREAALTRAIHV 918

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
           A  +   +      +  G    +T S GIA        +S ++  AD A+Y AK+ G+N 
Sbjct: 919 AERILTSL--VTPFVLEGREFFVTASIGIALSPQDGSELSKLMKNADTAMYHAKERGKNN 976

Query: 255 VVCFSDIENNTC 266
              +    N T 
Sbjct: 977 FQFYQTDMNATA 988


>gi|330981875|gb|EGH79978.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 1178

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 15/192 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + E   S +RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 727 SDISERRASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQAWVVLMFLDLDRFK 786

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-----L 195
            IND+ GH  GD+++  ++ +L+        V R+GG+EF         +EAA+     +
Sbjct: 787 PINDSLGHAAGDRMLQEMATRLLACVSVDDTVARMGGDEFTLLLEPDETREAALNRAIHV 846

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  +   +      +  G    +T S GIA      + +S ++  AD A+Y AK+ G+N 
Sbjct: 847 AERILTSL--ITPFVLEGREFFLTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNN 904

Query: 255 VVCFSDIENNTC 266
              +    N T 
Sbjct: 905 FQFYQADMNATA 916


>gi|119490653|ref|ZP_01623058.1| regulatory components of sensory transduction system [Lyngbya sp.
           PCC 8106]
 gi|119453818|gb|EAW34975.1| regulatory components of sensory transduction system [Lyngbya sp.
           PCC 8106]
          Length = 477

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 11/176 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
           L  +  ++  L+ ID L+ + N  +F  +L           + ++++  D+DYFK  ND 
Sbjct: 283 LEEANRKLQHLANIDGLTQIANRRSFDETLEQEWKRCFREQQPIALILCDVDYFKAYNDY 342

Query: 146 FGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD+ +  ++  +  V       V R GGEEF      +    A  +A  ++  I 
Sbjct: 343 YGHLQGDECLIQVAQAISQVIKRPADLVARYGGEEFVVILPNTDGSGARQVAQLIQDQIR 402

Query: 205 NSQ-INISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             Q  ++ S  S +IT+S GI+            ++  AD ALY AK+ GR+++V 
Sbjct: 403 QLQSPHVKSDVSSYITLSLGISSIIPSGMTSPEQLVNAADSALYQAKQQGRDQIVV 458


>gi|332141148|ref|YP_004426886.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551170|gb|AEA97888.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 996

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 109/228 (47%), Gaps = 24/228 (10%)

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI--------------LKELFI 95
           L  I + P++  +  +   + ++I ++ IS ++     S+               K+L  
Sbjct: 771 LEVIVIPPWW--DKPVWRAVVVLIAALIISSMVWLRIASLKKRSAELALKVEEKTKDLED 828

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148
              ++++LS  D L+GL N   F             +    S++  DID+FK+IND +GH
Sbjct: 829 VVEKLTRLSTQDSLTGLKNRRYFTQRAKAEWQEFQRHGRTFSLLLLDIDFFKRINDEYGH 888

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD V+  ++  L         + R GGEEF        EQEA  +A  LRK + +  I
Sbjct: 889 QIGDAVLVKIAKTLENNLRESDVIARWGGEEFLILLPSLKEQEAYWVAEKLRKAVASLVI 948

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + S    +++TI+ G+A+  + + I   I+  D+ LY  K++GRN VV
Sbjct: 949 D-SPPHQLNVTITCGVADIKNYDSIEACIHAVDKKLYKGKEAGRNAVV 995


>gi|288549379|ref|ZP_05966896.2| hypothetical protein ENTCAN_05250 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318873|gb|EFC57811.1| HmsT protein [Enterobacter cancerogenus ATCC 35316]
          Length = 305

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 70/275 (25%), Positives = 126/275 (45%), Gaps = 22/275 (8%)

Query: 8   FLSIWLCHEKNLESF--SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYIL 65
           F  +W     +  S     H+  +  ++   +FI ++ F +NI  F +   P + +   L
Sbjct: 29  FGVLWAWQIASKFSLITHDHSTYLIMALLTVLFIGSLAFASNIKAFTLHSLPAFIVCLWL 88

Query: 66  VEN---------LSLVIISITISLLLGY----ISGSILKELFISYNRISQLSRIDCLSGL 112
            ++          +L +++I I  +L       + ++L  L      ++ LS +D L+GL
Sbjct: 89  SDHDSWIRMMFFFALPVVAIGIHHVLQRRNDKFAQALLSRLLEERETLTDLSMMDPLTGL 148

Query: 113 LNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     S L +     N +  ++  DID+FK  ND++GH +GDK +  +S  +     +
Sbjct: 149 YNRRGLQSRLDNLPTPDNGEHFVLLLDIDHFKAYNDHYGHMMGDKALMRVSAAIRDAVRS 208

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF       S + A   A  +R+ + + +I      S+  ++TIS GI+ 
Sbjct: 209 RDIVARFGGEEFMVLLSNISLEHARQTAEHIRQKVYDLKIPHMFNESVATNVTISIGISI 268

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
               E     + +AD+ALY AK  GRN ++   ++
Sbjct: 269 Y-QNEDAERALEKADKALYEAKHMGRNNILLSDEL 302


>gi|86360811|ref|YP_472698.1| putative two-component response regulator protein [Rhizobium etli
           CFN 42]
 gi|86284913|gb|ABC93971.1| putative two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 416

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/268 (24%), Positives = 120/268 (44%), Gaps = 24/268 (8%)

Query: 15  HEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL--SLV 72
              ++  F   + +  FS+  +  IA   +   ++L      P      ++   L  S  
Sbjct: 133 RHLSIMLFVATSAITIFSVPLAWTIAIACYALCLYLILQWHNPLLEAGSVVAATLFFSCG 192

Query: 73  IISITIS-----------LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           II+  ++            LL       + EL  +  R+ +L+R D L+G+ N    + +
Sbjct: 193 IIATVVARRTMNILAQKTFLLDCRDQRRVAELADANARLERLARTDPLTGIANRRWMMET 252

Query: 122 LGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGR 174
           L S          ++++  DID+FK +ND  GH  GD+ +  ++  +          V R
Sbjct: 253 LESLWRHGRETGIVAMLMCDIDHFKGLNDKLGHGEGDRCLVKVAGIIQSCVRADRDLVSR 312

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEP- 232
            GGEEF        E+EA  +A  +R+ +E + + N +S     +T+S G+A +   +  
Sbjct: 313 HGGEEFLVVLPDVDEEEAVAVARRIRESVEAAALPNPASSVGPSVTLSVGVAFKSRADTG 372

Query: 233 --ISTIIYRADQALYVAKKSGRNRVVCF 258
             ++ + + AD ALY AK++GRN+V  F
Sbjct: 373 VSLANLQHEADMALYRAKEAGRNQVSVF 400


>gi|330967039|gb|EGH67299.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 730

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 62/213 (29%), Positives = 101/213 (47%), Gaps = 19/213 (8%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G   +L  ++  + ++ T  LL+   +   + +L  +  +I  L+  D L+GL N S  +
Sbjct: 246 GAPLVLDVSVEFITLNNTACLLM---NARDIGQLKSAQAQIQHLAYHDPLTGLPNRSLLM 302

Query: 120 SSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L          N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         V
Sbjct: 303 DRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSVIAARLEASVRQEDTV 362

Query: 173 GRLGGEEFAAAALGSS------EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
            RLGG+EF     G          +  +LA++LR ++         G  + +T S GI  
Sbjct: 363 ARLGGDEFVVLICGLDGSLEQVTHQVRVLADNLRVLLAEPMF--LDGHRLQVTPSVGIVL 420

Query: 227 RCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
                   + ++ RAD ALY AK SGRN    F
Sbjct: 421 IPDDGLTPADLLKRADTALYRAKDSGRNASQFF 453


>gi|293602985|ref|ZP_06685423.1| sensory box protein [Achromobacter piechaudii ATCC 43553]
 gi|292818605|gb|EFF77648.1| sensory box protein [Achromobacter piechaudii ATCC 43553]
          Length = 694

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 85/192 (44%), Gaps = 10/192 (5%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDI 136
             +    + +   ++ ++  ++  D L+G+ N   F   L         + + +++  D+
Sbjct: 255 ALLISDDVTDENAAHAQVRYMAHHDTLTGMPNRRLFREQLLRALNHCADDRRTAVLCLDL 314

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAIL 195
           D FK +ND  GHP GD+++   + +L  V      + RLGG+EFA       +Q +   +
Sbjct: 315 DNFKSVNDTLGHPCGDELLRLFARRLPKVLREQDTLARLGGDEFAVVLPNIGQQDDVRKM 374

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNR 254
           A  +   +   Q     G ++ +++S GIA           ++  AD ALY AK++GRN 
Sbjct: 375 AERIIDAVR--QPFEVEGHTVPMSVSIGIALAETPDHTADHLLRYADMALYEAKRNGRNC 432

Query: 255 VVCFSDIENNTC 266
           +  F        
Sbjct: 433 MAFFKPEMEAAA 444


>gi|257094363|ref|YP_003168004.1| diguanylate cyclase with hemerythrin-like metal-binding
           domain-containing protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046887|gb|ACV36075.1| diguanylate cyclase with hemerythrin-like metal-binding domain
           protein [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 483

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 81/174 (46%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           +EL  +   + Q++  D L+G  N              L  Y++ LS++  DID+FK IN
Sbjct: 152 QELQQTVVELEQVAGTDKLTGAWNRRRIEECVRSEMDRLNRYDQPLSLLVVDIDHFKAIN 211

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+V+  ++  L         + R GGEEF      +    AA+LA  LR  I
Sbjct: 212 DQHGHGAGDQVLQAVTALLQSRLRGTDALARWGGEEFVVVCPNTGRSTAALLAERLRGQI 271

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            ++   +       +T+S G AE    +       RAD+ALY AK  GRN+V  
Sbjct: 272 ASADFPLIG----QLTVSIGAAECSPGDTWEEWFQRADEALYRAKTGGRNQVQI 321


>gi|237811708|ref|YP_002896159.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346]
 gi|237504258|gb|ACQ96576.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346]
          Length = 466

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 10/228 (4%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           ++A  +F    F+   G+              S   +   ++  +    G +L+EL  + 
Sbjct: 240 WLAHAVFAGGFFMLSFGVVQALMTTRSFATVYSQQDLMARLAESMARTEG-VLQELKRTN 298

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
            ++  L+  D L+G  N   FI  + S   +        S++  D+D FK INDN+GH V
Sbjct: 299 QKLEHLATTDPLTGASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFKTINDNYGHQV 358

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+     Q +        + R+GGEEF           A+ +A  +R  I N+   I
Sbjct: 359 GDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRTTIANASFGI 418

Query: 211 SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV 
Sbjct: 419 -DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 465


>gi|304310664|ref|YP_003810262.1| hypothetical protein HDN1F_10220 [gamma proteobacterium HdN1]
 gi|301796397|emb|CBL44605.1| conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 327

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 60/170 (35%), Positives = 86/170 (50%), Gaps = 8/170 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFG 147
           + Y  + + S  D L+G  N  +  + L         YN+ LS++  D+DYFK+IND++G
Sbjct: 138 LRYQEVVRSSLTDALTGAGNRFSLDNVLHRETDLASRYNQPLSVLMLDLDYFKRINDSYG 197

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  ++  L           R GGEEF      +  + A ++A  LR  I N  
Sbjct: 198 HAAGDYVLKAVAKTLRATSRGVDMTFRYGGEEFVVLLNKTHLEGATVIAERLRNTIANLS 257

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + I  G  I +TIS G+A    +E     + RAD+ALY AK SGRNRV  
Sbjct: 258 V-IHDGKEIPVTISVGVAALQKQETTQQFMERADKALYRAKNSGRNRVAV 306


>gi|226198081|ref|ZP_03793653.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9]
 gi|225929957|gb|EEH25972.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9]
          Length = 499

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 95/196 (48%), Gaps = 13/196 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------- 125
           + ++   ++  Y++ S+ ++   +   +++L+  D L+GL N  A   +L          
Sbjct: 300 VFALIFVVMSAYLAHSLWRK-STAEAALARLAGTDSLTGLYNRRALDETLEREWRRAVGG 358

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAA 184
           +  L+I+F DID+FK+ ND +GH VGD+V+A +S  +          V R GGEEF    
Sbjct: 359 DRPLAILFVDIDHFKRYNDTYGHQVGDEVLATVSRCIAQQAARLGDVVARYGGEEFVVVL 418

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRA 240
             +    A ++A  +R  +    I         +T+S G+A           I  I+  A
Sbjct: 419 PDTPRGGALVVAERVRLGVRMLGIEHEGSEVGFVTVSVGVAVWHPDGASAPHIDAIVEAA 478

Query: 241 DQALYVAKKSGRNRVV 256
           DQALY AK  GRNRVV
Sbjct: 479 DQALYQAKADGRNRVV 494


>gi|119945517|ref|YP_943197.1| diguanylate cyclase [Psychromonas ingrahamii 37]
 gi|119864121|gb|ABM03598.1| diguanylate cyclase [Psychromonas ingrahamii 37]
          Length = 298

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 60/185 (32%), Positives = 88/185 (47%), Gaps = 21/185 (11%)

Query: 89  ILKELFISYNRIS-------QLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFF 134
           +  EL  +  ++        +L+  D L+GLLN                      +++F 
Sbjct: 116 LHSELLKANEKLEKQSQELFRLATTDPLTGLLNRRELQVQAQKVTHQAARNLSTFALLFI 175

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK++ND +GHP GDKV+  L++ L         V R+GGEEFA       E+ A  
Sbjct: 176 DIDFFKRVNDTYGHPAGDKVLICLANILTQERRVTDIVARMGGEEFALLLPNIDEENAYK 235

Query: 195 LANDLRKIIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGR 252
           LA  LRK IE   I+      I IT+S G  +  +  +     ++  ADQALY +K+ GR
Sbjct: 236 LAERLRKKIEKQTIDH-----IKITVSIGLVVTRKNTQTNFDILLELADQALYESKEWGR 290

Query: 253 NRVVC 257
           NR   
Sbjct: 291 NRTHV 295


>gi|302879164|ref|YP_003847728.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
 gi|302581953|gb|ADL55964.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
          Length = 935

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 97/214 (45%), Gaps = 14/214 (6%)

Query: 64  ILVENLSLVIISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  E +++  +    S +  Y++  + + E      RI+ L+  D L+GL N       +
Sbjct: 469 IFPEWVTISALRDETSQISHYVAVFLDITERKKEEERINYLANYDVLTGLPNRYLLSDRI 528

Query: 123 GSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     N K++++F D+DYFK IND+ GH +GD ++  ++ +L         + RL
Sbjct: 529 EQAFSSAQRNNFKVAVLFIDLDYFKNINDSLGHDIGDALLKLVAARLKTCLRRSDTIARL 588

Query: 176 GGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHK-EP 232
           GG+EF A      S +E   +A    K+IE+     + G   + IT S GI       E 
Sbjct: 589 GGDEFVALLSELDSSEEVIFVAE---KMIESLTEKFTLGEYQLSITPSIGICIYPDDGET 645

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              ++  AD A+Y AK  GRN    +S   N   
Sbjct: 646 SVELLRNADLAMYQAKDDGRNNFKFYSPDMNRKA 679


>gi|217968132|ref|YP_002353638.1| diguanylate cyclase [Dictyoglomus turgidum DSM 6724]
 gi|217337231|gb|ACK43024.1| diguanylate cyclase [Dictyoglomus turgidum DSM 6724]
          Length = 718

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 57/196 (29%), Positives = 91/196 (46%), Gaps = 14/196 (7%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------S 124
           VI  I  S +   I G+ +      +  +++L+  D L+ L N       L         
Sbjct: 528 VIYEILRSQISAAIQGAKI------FEELNRLAITDPLTQLFNRRYIEEELRKEIERSKR 581

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           Y+  LS++  D+D FK IND  GH  GD+V+  + + L         VGR GG+EF    
Sbjct: 582 YSRPLSVMVLDLDNFKIINDILGHQYGDEVLKKIGENLKKSCRKVDTVGRFGGDEFVIIL 641

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQA 243
             ++ +++  +AN + K +E  +I   +G  I+I+IS GIA           I+  AD A
Sbjct: 642 PETNLEKSIKVANKIIKNLEKMEIKFPNGEKIYISISIGIASYPETSKDPEKILSLADSA 701

Query: 244 LYVAKKSGRNRVVCFS 259
           +Y AK+ G  +    S
Sbjct: 702 MYNAKRLGGKQYSIAS 717


>gi|183220482|ref|YP_001838478.1| hypothetical protein LEPBI_I1081 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910593|ref|YP_001962148.1| GGDEF domain-containing protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775269|gb|ABZ93570.1| GGDEF domain protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167778904|gb|ABZ97202.1| Hypothetical protein with GGDEF domain; putative membrane protein
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 288

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 113/245 (46%), Gaps = 24/245 (9%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL----GYISGSI 89
            ++ F+ATV+F A  FL Y  + P      IL+  +   ++SI IS +L     +I   I
Sbjct: 45  IYNAFLATVLFSAMGFLVYFEILPSVN---ILMPTVKPTLMSIFISSILLGGSAFIVNQI 101

Query: 90  LKELFIS----YNRISQLSRIDCLSGLLNHSAFIS----SLGSYNE-----KLSIVFFDI 136
           + +LF S      ++  ++  D L+G+ N  +F S     L           ++ + FD+
Sbjct: 102 VSKLFSSLTDVNQKLLAIAMTDPLTGISNRRSFFSNLEIELARKQRSVGPYPIAFLLFDL 161

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK IND +GH  GD+V+   +  L        F  R GGEEF      +    A ++A
Sbjct: 162 DLFKSINDTYGHEFGDQVLIEFATVLKTSLRKQDFPARWGGEEFLVLLPNTDLDGAIVVA 221

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             +R    +          I  + S GI+    +      +I +ADQ LY AK++GRN++
Sbjct: 222 EKIRTSFHSLSFYAKD-KRIQCSTSVGISVCNEQGINPEVVINQADQYLYEAKRNGRNQI 280

Query: 256 VCFSD 260
             +S+
Sbjct: 281 --YSE 283


>gi|119483249|ref|ZP_01618663.1| hypothetical protein L8106_04331 [Lyngbya sp. PCC 8106]
 gi|119458016|gb|EAW39138.1| hypothetical protein L8106_04331 [Lyngbya sp. PCC 8106]
          Length = 1614

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 95/230 (41%), Gaps = 19/230 (8%)

Query: 36   SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
            S+ I T++      LFY+ +    GL     +    V   I++ L     S   L+E   
Sbjct: 1395 SLCIPTIVQGQAFGLFYLRIQQPEGLSKGQQQLAQTVAEQISLGL-----SNLQLRE--- 1446

Query: 96   SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148
                +   S  D L+GL N       L           + L ++  DID+FKQ NDNFGH
Sbjct: 1447 ---ELRNQSIRDALTGLFNRRYLKEFLVREFKRSQRSGQPLGVIMVDIDHFKQFNDNFGH 1503

Query: 149  PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
              GD V+  ++  L           R GGEE        S +   + A +L + I   Q+
Sbjct: 1504 EAGDVVLQKVAQFLQHQVRLSDLACRYGGEEMTLILPEMSLENVKVRAEELCQGIRQLQL 1563

Query: 209  NISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +        IT S G+A           ++ +AD ALY AK  GRN+VVC
Sbjct: 1564 SYQGKDLGQITASFGVACFPQQGSTPEEVMKKADDALYQAKHQGRNQVVC 1613


>gi|163759001|ref|ZP_02166087.1| hypothetical protein HPDFL43_04535 [Hoeflea phototrophica DFL-43]
 gi|162283405|gb|EDQ33690.1| hypothetical protein HPDFL43_04535 [Hoeflea phototrophica DFL-43]
          Length = 257

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 60/176 (34%), Positives = 94/176 (53%), Gaps = 8/176 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           + + L +    +   +  D ++GL N   F  +LG Y       N+ + +V FD+D+FKQ
Sbjct: 82  MTESLSVRSQSLEHAAVTDSMTGLYNRRYFDEALGEYLNAFRSINKPIGMVIFDLDHFKQ 141

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH VGD+V+  +++ L +       V RLGGEEFA  +   S+++   LA+ +R 
Sbjct: 142 VNDTHGHDVGDEVLRQVAECLHMFTRYHDVVARLGGEEFAILSPNISDRQLRSLADRIRL 201

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +    +  S   ++ +TISAGIA     E    +  RAD+ LY AK+ GRNRV  
Sbjct: 202 AVSQLTVE-SGNVALRVTISAGIAIWDGTERGDELYRRADRQLYEAKRQGRNRVCA 256


>gi|219846990|ref|YP_002461423.1| diguanylate cyclase with PAS/PAC sensor [Chloroflexus aggregans DSM
           9485]
 gi|219541249|gb|ACL22987.1| diguanylate cyclase with PAS/PAC sensor [Chloroflexus aggregans DSM
           9485]
          Length = 728

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 72/217 (33%), Positives = 103/217 (47%), Gaps = 23/217 (10%)

Query: 58  FYGLEYILVENLS----LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
            +GL YI  E L     +V+   TI L L  ++      L  +   + + + ID L+GL 
Sbjct: 512 IFGLLYIAGEELPRSELIVMTGDTIKLALSNLA------LRAT---LREQAIIDPLTGLY 562

Query: 114 NHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N     +SL             L++   DID+FKQ ND +GH  GD ++  L+       
Sbjct: 563 NRRYLETSLSRELHRAQREQIPLTVAMIDIDHFKQFNDQYGHDAGDTLLRELAVIFREHL 622

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                  R GGEEF     G ++  A      LR++++  QI  +  P   ITIS G   
Sbjct: 623 RQSDLACRFGGEEFVLILPGVNQATAQTRLQHLREVVQQRQIIFAGAPLRPITISIGY-F 681

Query: 227 RCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSDI 261
            C KE I    ++ RAD ALY AK+SGRNRV+ FS++
Sbjct: 682 TCEKEEIEPHILLQRADAALYAAKRSGRNRVIDFSNL 718


>gi|219848276|ref|YP_002462709.1| diguanylate cyclase [Chloroflexus aggregans DSM 9485]
 gi|219542535|gb|ACL24273.1| diguanylate cyclase [Chloroflexus aggregans DSM 9485]
          Length = 369

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 122/253 (48%), Gaps = 32/253 (12%)

Query: 33  IFFSIFIATVIF-IANIFLFYIGLTPFYGLEYILVENLSLVI----ISITISLLLGYISG 87
           I+F + I T+ F +    +  I ++  YGL   +V    LV       +T+ L    + G
Sbjct: 119 IWFLLMICTLAFHLFRHRISVILVSSLYGLALAIVGGQVLVAGLQGNDVTMGLRALQVYG 178

Query: 88  ----------------SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------S 124
                           SI + L I Y  + + + ID L+GL N       L         
Sbjct: 179 MGGIFLCFIYIISRYRSISQRLQIEYQLMQEWAFIDMLTGLFNRRRCEQLLQTNIEYSRR 238

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           Y++ L+I  +DID+FKQ+ND +GH VGD+V+  ++        +   VGR GGEEF    
Sbjct: 239 YHQPLTICLWDIDHFKQVNDTYGHEVGDQVLRQIARLAQSSTRSTDLVGRWGGEEFCLIL 298

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +   EA  L + LR +I  +Q+ +   P   +T S G+ E    + ++++I RAD+AL
Sbjct: 299 PHTCLSEAEELVDRLRHLI-KTQVRVGQQP---VTASFGLVEYDTTDNLASLIRRADEAL 354

Query: 245 YVAKKSGRNRVVC 257
           Y AK +GRNRVV 
Sbjct: 355 YAAKAAGRNRVVV 367


>gi|86158001|ref|YP_464786.1| diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774512|gb|ABC81349.1| diguanylate cyclase with GAF sensor [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 764

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 9/185 (4%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           LL+  +  +   +    +++  +L+  D L+GL NH  F   L         Y ++ S++
Sbjct: 568 LLVISMHAAQSIDRARLFDQTERLATTDGLTGLTNHRTFQERLDAHLGQAQRYGKRTSLL 627

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK +ND +GHPVGD+V+  ++  L         V R GGEEFA     +    A
Sbjct: 628 LCDIDHFKSVNDTYGHPVGDQVLRGVARTLARAARGTDVVARYGGEEFAIVMPETDTGGA 687

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSG 251
            ++A  +R+ +         GP + +T+S G+A           +I RAD  LY AK+ G
Sbjct: 688 MVIAERIREKVGQLVFETEQGP-LKVTLSLGVATFPDDGGQKPALIERADACLYHAKRHG 746

Query: 252 RNRVV 256
           RN+ V
Sbjct: 747 RNQSV 751


>gi|85716223|ref|ZP_01047197.1| two component diguanylate cyclase [Nitrobacter sp. Nb-311A]
 gi|85696895|gb|EAQ34779.1| two component diguanylate cyclase [Nitrobacter sp. Nb-311A]
          Length = 457

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 9/165 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N     S L +         + L+++  DIDYFK IND++GH  GD V
Sbjct: 290 EMAVTDGLTGLHNRRYMESHLATLAEQASLRGKPLALMMLDIDYFKSINDSYGHDAGDDV 349

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG- 213
           +   + ++           R GGEEF      +    A  +A  LR+ I     ++  G 
Sbjct: 350 LREFALRIRKAIRGIDLACRYGGEEFVVVMPETDLHVAGRVAERLRRAIAGETFSVHKGT 409

Query: 214 PSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
             + +TIS G++      E +S  + RAD ALY AK  GRNRVV 
Sbjct: 410 KRLKVTISIGLSILERKGESVSDALKRADVALYRAKHDGRNRVVA 454


>gi|257061570|ref|YP_003139458.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8802]
 gi|256591736|gb|ACV02623.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8802]
          Length = 660

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 98/203 (48%), Gaps = 18/203 (8%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------S 124
           ++ S+   L +      +L++L  +  +++ L+ +D L+ + N   F   L         
Sbjct: 457 LLESVAAQLGIAIAHSHLLEQLKEANEKLAALANLDGLTQVANRRHFDEILAQRWKQCAR 516

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAA 183
             + LS++  D+DYFK+ ND +GH +GD+ +  ++  +   V      V R GGEEFA  
Sbjct: 517 EKQPLSLIMCDVDYFKRYNDLYGHQMGDECLIKVAQTIAKTVQRPGDLVARWGGEEFAVI 576

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIA---------ERCHKEPI 233
              +       +A  +R+ +++  I     P    ++IS GIA         E  H+  I
Sbjct: 577 LPNTDVNGVKYIAQSIREQVQSLAIIHEDSPIKNQVSISLGIATIIPPAKTLENNHESLI 636

Query: 234 STIIYRADQALYVAKKSGRNRVV 256
             +I +ADQALY AK+ GR+R+ 
Sbjct: 637 KALIAQADQALYQAKEQGRDRIA 659


>gi|241762869|ref|ZP_04760932.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
 gi|241368044|gb|EER62249.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
          Length = 413

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 99/206 (48%), Gaps = 16/206 (7%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F  +   LV +  L+ +++ +SL     S  +++ +     ++  L+  D L+ L+N   
Sbjct: 211 FNTVMTALVGSFLLLFVALNLSL-----SSLVIEPMARLNRKLEDLATKDFLTDLVNRRR 265

Query: 118 FISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           F   L +           LS+V FDID+FK+IND FGH  GD V+   + ++  +  +  
Sbjct: 266 FFERLEAEMANTRIKKGSLSVVMFDIDFFKRINDTFGHDSGDVVLKHTALRVRELLRSSD 325

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
              R GGEEF      +    A  +A  +R  I  +  +       H++ S G+A   H+
Sbjct: 326 CAARFGGEEFIILLKETPLDAAMAMAEAVRARIAGAPFDAVG----HVSASFGVASWDHQ 381

Query: 231 EPISTIIYRADQALYVAKKSGRNRVV 256
           E    +I RAD ALYVAK  GRN VV
Sbjct: 382 EDSHALIKRADAALYVAKSRGRNCVV 407


>gi|254478046|ref|ZP_05091430.1| PAS fold family protein [Carboxydibrachium pacificum DSM 12653]
 gi|214036050|gb|EEB76740.1| PAS fold family protein [Carboxydibrachium pacificum DSM 12653]
          Length = 692

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 11/175 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
             + E       + + S  D L+ + N   F+  L    E+        S++ FD+D+FK
Sbjct: 519 RDISERKRFEELLYRQSITDPLTNIYNRRFFMQMLEQEIERVKRNKKLFSLIMFDLDHFK 578

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND FGH  GD V+  ++D +        +  R GGEEF      +S   AA LA +LR
Sbjct: 579 NVNDRFGHAAGDMVLKSVADTVKGRIRKTDYFARWGGEEFIILLPETSLNNAAELAEELR 638

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           K I  ++++        +T S G+ E  + + + T++ R D ALY AK SGRN V
Sbjct: 639 KKISETELDGIG----KVTASFGVTEYRNTDTVDTVLLRVDGALYEAKGSGRNCV 689


>gi|167033233|ref|YP_001668464.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida GB-1]
 gi|166859721|gb|ABY98128.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida GB-1]
          Length = 698

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 83/185 (44%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKL-SIVFFDI 136
                   E   ++ +I  ++  D L+GL N + F   L         N KL + +  D+
Sbjct: 256 LFVAEDATEELAAHAQIHHMAHHDALTGLPNRTLFNERLRQALVRGSENAKLTAALCLDL 315

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-IL 195
           D FK IND+ GH  GDK++  L  +L         + RLGG+EFA    G   ++AA   
Sbjct: 316 DNFKNINDSLGHAFGDKLLRELGKRLRRELREHDTLARLGGDEFAVVLTGLEGRDAACNT 375

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
           A+ L   I  S      G    + +S GIA           ++  AD ALY AK++GRNR
Sbjct: 376 AHRLINAI--SPPFQIEGHQFSVGVSIGIAIAPDDNDQAEQLLGYADMALYEAKRNGRNR 433

Query: 255 VVCFS 259
             CF 
Sbjct: 434 YECFD 438


>gi|261316078|ref|ZP_05955275.1| diguanylate cyclase [Brucella pinnipedialis M163/99/10]
 gi|261305104|gb|EEY08601.1| diguanylate cyclase [Brucella pinnipedialis M163/99/10]
          Length = 240

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 117/231 (50%), Gaps = 14/231 (6%)

Query: 41  TVIFIANIFLFYIG---LTPFYGLEY--ILVENLSLVIISITISLLLGYISGS--ILKE- 92
             +   ++ LF +G   +T F+  E   ++  +LSL    + I     +I      LKE 
Sbjct: 8   AALLTLSVVLFCVGATSITAFWSGETPGLMAISLSLGFPLVMIFPFSAFIFLRYDKLKEA 67

Query: 93  ---LFISYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNF 146
              L  S+  +   +RID ++GLLN  A   ++    S  E  +++  D D+FK IND+F
Sbjct: 68  YAQLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSF 127

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+
Sbjct: 128 GHGVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENT 187

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             + +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV 
Sbjct: 188 PFHTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVVF 238


>gi|291286670|ref|YP_003503486.1| diguanylate cyclase with PAS/PAC sensor [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290883830|gb|ADD67530.1| diguanylate cyclase with PAS/PAC sensor [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 622

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 86/168 (51%), Gaps = 11/168 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148
              +I +LS  D L+GL N     + L         +N +      D D+FK++ND +GH
Sbjct: 457 EKKKIEELSITDRLTGLYNRHKLDAVLKAERIRNERHNTRFCAAILDADHFKRVNDTYGH 516

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD V+  L+  +        F GR GGEEF   AL +     A LA+ LRK +E +  
Sbjct: 517 QVGDDVLVKLAAIIKENTRESDFCGRWGGEEFLVVALETDITNTAFLADKLRKAVEETDF 576

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                    +T+S G+AE    E I+  I RAD+ALY AK++GRNRVV
Sbjct: 577 TPVE----KVTVSIGVAEYSRGETIAHFINRADEALYKAKQTGRNRVV 620


>gi|320333481|ref|YP_004170192.1| diguanylate cyclase with PAS/PAC and GAF sensors [Deinococcus
            maricopensis DSM 21211]
 gi|319754770|gb|ADV66527.1| diguanylate cyclase with PAS/PAC and GAF sensors [Deinococcus
            maricopensis DSM 21211]
          Length = 1197

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 77/171 (45%), Gaps = 8/171 (4%)

Query: 94   FISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNF 146
                  + Q S  D L+GL N                 +   + ++  DID+FK+ ND +
Sbjct: 1024 LRLRESLRQQSIRDALTGLFNRRYLEETFEREMRRAHRHRHPMGLIMLDIDHFKRFNDTY 1083

Query: 147  GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
            GH  GD ++  L + L           R GGEEFA    G++ ++ A  A  +R+ +   
Sbjct: 1084 GHEAGDLLLRALGETLSANVRGEDVACRFGGEEFALLLPGATIEQTAARAEHIRQAVMQL 1143

Query: 207  QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
             + +       +T S G+A    + E ++ +++ AD ALY AK  GRN VV
Sbjct: 1144 HVTVRGQALGQVTASFGVAVFPQYGEALADLMHAADFALYRAKSEGRNCVV 1194


>gi|289627986|ref|ZP_06460940.1| diguanylate cyclase, putative [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289646454|ref|ZP_06477797.1| diguanylate cyclase, putative [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330866579|gb|EGH01288.1| diguanylate cyclase [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 686

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 60/184 (32%), Positives = 88/184 (47%), Gaps = 11/184 (5%)

Query: 82  LGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSI 131
           L     S+ +E            Q + ID L+GL N +A+   L     K       L +
Sbjct: 501 LSARVASMEQEALGFRTHLEEQRQKALIDPLTGLPNRAAWGERLEQEMSKWQHEKNSLLV 560

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK+IND +GH  GDKV+  +++       +  F+ R GGEEF      +    
Sbjct: 561 CILDLDHFKRINDGYGHLAGDKVLKIVANVFRKRLRSDDFLARFGGEEFVMLLPATPPGT 620

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              L ++LR  +E+   +   G  + IT+S G+      E   T I RADQALY AK++G
Sbjct: 621 GLTLLDELRTAVESCPFHFK-GERVTITVSIGVTAFRTAERSDTAIKRADQALYKAKENG 679

Query: 252 RNRV 255
           RNRV
Sbjct: 680 RNRV 683


>gi|238025077|ref|YP_002909309.1| GGDEF domain-containing protein [Burkholderia glumae BGR1]
 gi|237879742|gb|ACR32074.1| GGDEF domain protein [Burkholderia glumae BGR1]
          Length = 509

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 61/200 (30%), Positives = 93/200 (46%), Gaps = 11/200 (5%)

Query: 68  NLSLVIISITISLLLGYISGS-ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
            L L++   ++ +L G +  S  L+    +  ++ +L R D L+GL N  AF ++L    
Sbjct: 302 WLGLIVTVFSVVVLAGAVLLSHELRLRQKAEQQLHRLVRTDALTGLGNRRAFDATLHSEW 361

Query: 123 ---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGE 178
                  + LS++F DID FK  ND +GHP GD+V+  +   L      P   V R GGE
Sbjct: 362 LRAQRTGKPLSLLFVDIDQFKAYNDRYGHPAGDEVLREVGRVLTQCVRRPSDSVARYGGE 421

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI-- 236
           EF      +    A  +   +R  I    I  S+     +T+S G+         S +  
Sbjct: 422 EFVVTLPETDAAGATHIGEHMRDSIYELAIPHSTSRHGRVTVSIGVVTSGDTPVASDLAF 481

Query: 237 IYRADQALYVAKKSGRNRVV 256
           +  AD ALY AK +GRNR+ 
Sbjct: 482 VSLADTALYHAKTAGRNRIC 501


>gi|148559944|ref|YP_001258991.1| GGDEF domain-containing protein [Brucella ovis ATCC 25840]
 gi|148371201|gb|ABQ61180.1| GGDEF domain protein [Brucella ovis ATCC 25840]
          Length = 264

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 14/234 (5%)

Query: 41  TVIFIANIFLFYIG---LTPFYGLEY--ILVENLSLVIISITISLLLGYISGS--ILKE- 92
             +   ++ LF +G   +T F+  E   ++  +LSL    + I     +I      LKE 
Sbjct: 8   AALLTLSVVLFCVGATSITAFWPGETPGLMAISLSLGFPLVMIFPFSAFIFLRYDKLKEA 67

Query: 93  ---LFISYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNF 146
              L  S+  +   +RID ++GLLN  A   ++    S  E  +++  D D+FK IND+F
Sbjct: 68  YAQLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSF 127

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+
Sbjct: 128 GHGVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENT 187

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV   +
Sbjct: 188 SFHTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVVFDEE 241


>gi|330809082|ref|YP_004353544.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377190|gb|AEA68540.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 1007

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 12/183 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           E  ++  RI  +   D L+GL N +     L         YN  +++VF D+D FK +ND
Sbjct: 538 ERQLTEKRIRFMGDHDALTGLPNRTLLEDRLKQAMLYAQRYNRLVTVVFLDLDKFKLVND 597

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG--SSEQEAAILANDLRKI 202
           + GH  GD+++  ++ +L+        V RLGG+EF        S       + + +++ 
Sbjct: 598 SLGHSAGDELLKTVAQRLLGCVRRTDTVVRLGGDEFVIILFDQPSDLDGVTPVLHKIQEA 657

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           I   +     G ++H+T S G+A          T++  AD A+Y AK+ GRN    ++  
Sbjct: 658 I--LRPIQLGGHTLHVTCSMGLATYPADGSDTDTLLSNADAAMYRAKELGRNSFQFYTSE 715

Query: 262 ENN 264
            NN
Sbjct: 716 MNN 718


>gi|307545291|ref|YP_003897770.1| diguanylate cyclase [Halomonas elongata DSM 2581]
 gi|307217315|emb|CBV42585.1| diguanylate cyclase [Halomonas elongata DSM 2581]
          Length = 572

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 74/249 (29%), Positives = 110/249 (44%), Gaps = 30/249 (12%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
           FFS+ + T + +A+      GL P++ +  +    L  V+  +TISLL    +   LK L
Sbjct: 331 FFSLLLVTDMAVAH------GLLPWFRVP-VSSGALIFVLALVTISLLEYNRTHQELKRL 383

Query: 94  FISYN---------------RISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSI 131
            +                  R+   S  D L+GL N   F        +        L++
Sbjct: 384 NLRLEQEVAQRTGELQTLVKRLESFSYTDPLTGLHNRRYFTKLLEQSTAQAQRQGYPLTL 443

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FKQIND +GH  GD V+A ++  L   F     V RLGGEEFA     +    
Sbjct: 444 LMIDIDHFKQINDRYGHEAGDSVLAAIAHCLSQYFREADVVCRLGGEEFAVLMHNTETSA 503

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
               A  L K +  +  +    P   +TIS GIA    H      ++  AD+ALY AK +
Sbjct: 504 VKERAEALLKTLACTVQHHQQIPLGPVTISCGIASYPLHAVNPQALVGLADKALYNAKHA 563

Query: 251 GRNRVVCFS 259
           GR R+  ++
Sbjct: 564 GRARIHVYA 572


>gi|288961296|ref|YP_003451635.1| diguanylate cyclase [Azospirillum sp. B510]
 gi|288913604|dbj|BAI75091.1| diguanylate cyclase [Azospirillum sp. B510]
          Length = 627

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 89/174 (51%), Gaps = 8/174 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LG---SYNEKLSIVFFDIDYFK 140
             ++E  +   R+ QL+ +D L+GLLN  AF+      L         +S++  D D+FK
Sbjct: 450 RDIRERKLQEERLWQLATLDPLTGLLNRRAFMERGAALLEEGWRQGRPVSVLMIDADHFK 509

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND FGH  GD V+  L+  L         +GRLGGEEFA    G+   +A  +A  L 
Sbjct: 510 SINDGFGHQTGDVVLRMLAGILAAAVRGDDLLGRLGGEEFAVILPGADGPDADGIAERLL 569

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +  +++    G  + ITIS GI+    +  +  ++  AD+ALY AK  GR+R
Sbjct: 570 ADVRQARVPAP-GRILTITISIGISVAQRRCALEDLLAAADRALYEAKTMGRDR 622


>gi|161504899|ref|YP_001572011.1| hypothetical protein SARI_03028 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866246|gb|ABX22869.1| hypothetical protein SARI_03028 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 308

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 73/275 (26%), Positives = 124/275 (45%), Gaps = 22/275 (8%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYIGLTPF------- 58
           F  +W  H      +   + F  +  S+   +FI ++ F ANI  F +   P        
Sbjct: 32  FGGLWATHIALKYPALGHYDFSFLLISLLSVLFIGSIAFSANIVAFTLYALPSVALCLWL 91

Query: 59  ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112
                GL  + +  L +V I+I   +   Y   +  ++ +L      ++ LS +D L+GL
Sbjct: 92  NGNEQGLRILYLMALPMVGIAIQHIIQKRYDNFAQQLMFKLLAERETLNSLSMLDPLTGL 151

Query: 113 LNHSAFISSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     S L +       +  ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 152 YNRRGLQSRLDTLQALDSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 211

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      +  Q+A   A  +R+ + + +I      S+  ++T+S GIA 
Sbjct: 212 RDVVCRFGGEEFLVLLTATEPQQARATAERIRQKVYDLKIPHMFNESVATNVTVSIGIA- 270

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                 I   I +AD+ALY AK  GRN ++   D+
Sbjct: 271 PLADRNIGDAIEKADKALYEAKHLGRNHILVSGDL 305


>gi|83594703|ref|YP_428455.1| diguanylate cyclase [Rhodospirillum rubrum ATCC 11170]
 gi|83577617|gb|ABC24168.1| Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           domain [Rhodospirillum rubrum ATCC 11170]
          Length = 492

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + + E       + +L+  D L+G LN  AF+ +          + E +++   DID+FK
Sbjct: 315 TDITEQKRMEEALRRLATTDPLTGALNRRAFMEAARRDLALAQRHGEPVTVALADIDHFK 374

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND  GH  GD+ +      +         +GR+GGEEFA     ++   A +LA+ LR
Sbjct: 375 RVNDQHGHATGDEALKTFVATVHGALRASDVLGRMGGEEFALILPHTALASAMLLADRLR 434

Query: 201 KIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + + N ++   SG  +  T+S G+AE   H   I T++  AD+ALY AK +GRNRV+ 
Sbjct: 435 QTLANLRVPCPSG-EVEFTVSIGLAELGTHGTTIDTLLQAADEALYRAKSAGRNRVIA 491


>gi|88859082|ref|ZP_01133723.1| hypothetical protein PTD2_08759 [Pseudoalteromonas tunicata D2]
 gi|88819308|gb|EAR29122.1| hypothetical protein PTD2_08759 [Pseudoalteromonas tunicata D2]
          Length = 639

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 104/193 (53%), Gaps = 10/193 (5%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSY 125
           +++   + +L  +S  + +++ +S  R+++L+  D L+ L N                  
Sbjct: 446 LVNSLFAAILILLSVFVYRQVKVS-KRLNRLANTDSLTQLANRRYTFHFAKIVFKEAQIE 504

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            + LSI+ FDID+FK+INDN+GHP GD+V+  ++D+       P  +GR+GGEEF     
Sbjct: 505 QKPLSIIIFDIDHFKRINDNYGHPFGDEVLMAVADKAQAGLREPDLLGRIGGEEFMVVLK 564

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQAL 244
            +   +A  +A  +R++I       ++   + +T S G+A+     +   ++   AD+AL
Sbjct: 565 NTPINQAVEIAERMRELIAQLSF-AAAQQQVKVTASFGVAQFNVDVDDFGSLFQHADEAL 623

Query: 245 YVAKKSGRNRVVC 257
           Y AK +GRN+VVC
Sbjct: 624 YRAKNAGRNQVVC 636


>gi|148258166|ref|YP_001242751.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1]
 gi|146410339|gb|ABQ38845.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1]
          Length = 502

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 53/200 (26%), Positives = 95/200 (47%), Gaps = 15/200 (7%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------ 123
           ++++  I   L    ++   ++       R+ QL+  D L+GL N   F  ++       
Sbjct: 296 AMMLALIVFVLAATQVAAREIQLRTKVETRLEQLATTDPLTGLKNRRKFDETIEVEWRRA 355

Query: 124 -SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFA 181
             ++  L ++  D D+FK  NDN GH  GD+V+  ++  +            R GGEEFA
Sbjct: 356 LRHHAPLGLLMIDADHFKSYNDNHGHQAGDQVLVGIAVCISDSVRRAGDCAARYGGEEFA 415

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYR 239
               G+S+ +A  +A  +R  +      I +G + + ++S G+A          + ++  
Sbjct: 416 VLLPGTSDADALHVAETIRTKVA-----IWAGEAGNTSVSIGVASITPSRDTDWTALMNA 470

Query: 240 ADQALYVAKKSGRNRVVCFS 259
           AD+ALY+AK +GRNR V  +
Sbjct: 471 ADRALYMAKAAGRNRCVAAT 490


>gi|167577724|ref|ZP_02370598.1| GGDEF domain protein [Burkholderia thailandensis TXDOH]
          Length = 489

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 13/196 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE----- 127
           + ++   ++  Y++ S+ ++   +   +++L+  D L+GL N  A   +L          
Sbjct: 290 VFALIFVVMSAYLAHSLWRK-STAEAALARLAGTDSLTGLHNRRALDETLEREWRRAVGG 348

Query: 128 --KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAA 184
              L+I+F DID+FK+ ND +GH VGD+V+A +S  +          V R GGEEF    
Sbjct: 349 ERPLAILFVDIDHFKRYNDTYGHQVGDEVLATVSRCIAQQAARLGDVVARYGGEEFVVVL 408

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRA 240
             +    A ++A  +R  +    I         +T+S G+A           I+ I+  A
Sbjct: 409 PDTPRGGALVVAERVRLGVRMLGIEHEGSEVGFVTVSVGVAVWQPDGARAPHIAAIVEAA 468

Query: 241 DQALYVAKKSGRNRVV 256
           DQALY AK +GRNRVV
Sbjct: 469 DQALYQAKAAGRNRVV 484


>gi|186471840|ref|YP_001863158.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum
           STM815]
 gi|184198149|gb|ACC76112.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum
           STM815]
          Length = 694

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 14/213 (6%)

Query: 64  ILVENLSLVIISITISLL----LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           I+V  L++  +++TISLL    L   + ++ + L  +   +  L+  D L+ L N     
Sbjct: 220 IIVVTLAVTAVALTISLLEDLRLETENAALTRSLAEANQELGYLALHDALTKLPNRVLLE 279

Query: 120 SSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L            + +++F D+D FK +ND +GH VGD+++  ++++L         +
Sbjct: 280 GRLEEALARARSDGGEFALMFMDLDGFKVVNDAYGHQVGDRLLVQVAERLASAVRGNDTL 339

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKE 231
            R+GG+EF           A I+A  L   I  +  ++  G  + I+ S GIA       
Sbjct: 340 ARVGGDEFVLLVPDEGRAGATIIAGRLLAAI-GAPFDV-DGHDLRISTSIGIAMCPADGA 397

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            +   +  AD A+Y AK  GRN    F    N 
Sbjct: 398 LVHDALMHADAAMYHAKSMGRNAHCFFDASMNE 430


>gi|330952070|gb|EGH52330.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 690

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 87/184 (47%), Gaps = 11/184 (5%)

Query: 82  LGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSI 131
           L     S+ +E            Q + ID L+GL N +A+   L     +       L +
Sbjct: 505 LAARVASMEQEALGFRTHLEEQRQKALIDPLTGLPNRAAWGERLEQEMARWQEEKNSLLV 564

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK+IND +GH  GDKV+  +++          F+ R GGEEF      +    
Sbjct: 565 CILDLDHFKRINDGYGHLAGDKVLKIVANVFSKRLRANDFLARFGGEEFVMLLPATPPAT 624

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              L ++LR  +E+   +   G  + IT+S G+      E   T I RADQALY AK++G
Sbjct: 625 GLTLLDELRAAVESCPFHFK-GERVTITVSIGLTAFRPGERSDTAIKRADQALYKAKENG 683

Query: 252 RNRV 255
           RNR+
Sbjct: 684 RNRI 687


>gi|126652687|ref|ZP_01724848.1| hypothetical protein BB14905_23013 [Bacillus sp. B14905]
 gi|126590536|gb|EAZ84654.1| hypothetical protein BB14905_23013 [Bacillus sp. B14905]
          Length = 325

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 12/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           +L      + +LS  D L+GL N   F   L           +  S+   DID+FK++ND
Sbjct: 153 KLLAVNATLIELSETDKLTGLKNRRFFQDKLEQQLNSYYESAKPFSLCILDIDHFKKVND 212

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH VGD V+A L+  L         V R GGEEF      +    A  L   +RK + 
Sbjct: 213 TFGHQVGDDVLAQLAQLLTQRARKEDTVARYGGEEFVMILPETEIAAAKELGEQIRKTVA 272

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                +   P+  +TIS G+A    ++  +T++  AD ALY +KK+GRN+V  F D+
Sbjct: 273 -----LDHWPAGQVTISIGMATVTSEDTGTTLLKNADDALYASKKNGRNQVTHFFDM 324


>gi|119511357|ref|ZP_01630470.1| PleD-like protein [Nodularia spumigena CCY9414]
 gi|119463979|gb|EAW44903.1| PleD-like protein [Nodularia spumigena CCY9414]
          Length = 1613

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 71/272 (26%), Positives = 107/272 (39%), Gaps = 28/272 (10%)

Query: 3    RSLKDF--LSIWLCHEKNLESFSPHTFMIYF-------SIFFSIFIATVIFIANIFLFYI 53
            +S  DF     W      L + + H   +         +I  ++ I  +     + LFY+
Sbjct: 1351 QSAPDFHPQDCWALRRGRLHTCNHHQSGLRCQHIPADEAIATTLCIPMIAQGETLGLFYL 1410

Query: 54   GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
                   L    ++    V   + ++     I+   L+E       +   S  D L+GL 
Sbjct: 1411 STNNSTALPDAKLQIARTVAEQVALA-----IANLNLRET------LQYQSIRDPLTGLY 1459

Query: 114  NHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
            N       L             +S+V  D+DYFK+ ND +GH VGD V+  +   L    
Sbjct: 1460 NRRYLEEVLTQEIARGQRRQHPISVVMIDVDYFKRFNDTYGHDVGDYVLQTIGAMLKETV 1519

Query: 167  GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                   R GGEE       SS +E  I A ++R+ I    +  +      +TIS GIA 
Sbjct: 1520 RGSDIACRYGGEEMTLILPESSLEETTIKAEEIREAIAQLTLAYNGQHLGKLTISLGIAG 1579

Query: 227  RC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
               H      +I  AD ALY AK +GRN+VV 
Sbjct: 1580 FPKHGTTGIALIQAADAALYRAKAAGRNQVVV 1611


>gi|17228714|ref|NP_485262.1| hypothetical protein all1219 [Nostoc sp. PCC 7120]
 gi|17130566|dbj|BAB73176.1| all1219 [Nostoc sp. PCC 7120]
          Length = 737

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL +  + +  L+  D L+GL N   F   L          N  L ++F D+D FKQ+ND
Sbjct: 557 ELKLKEDHLRYLAYHDALTGLPNRKYFAEQLYESINWAKDNNLSLGLLFIDLDGFKQVND 616

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
           + GH +GD+++  ++ +L         V RLGG+EF        + Q AA +A  +   I
Sbjct: 617 SLGHEMGDRLLVVIAQRLSNSLRASDTVARLGGDEFTVILQAIPNVQVAAKVAEKILANI 676

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++  + +G +  +++S GI+          T++ +AD A+Y AK  G+NR     
Sbjct: 677 --TEPIVLNGCTAKVSVSIGISIYPETSLDPDTLLKKADAAMYRAKHLGKNRFELAD 731


>gi|46201931|ref|ZP_00054098.2| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 290

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 9/179 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           E       + + S  D ++GL N       +             L+++  D+D+FK +ND
Sbjct: 106 ETKRLMETLRESSLSDPMTGLNNRRFLEEYVDTLVANVHRRKSALTVMMLDLDHFKMVND 165

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD V+  LS  L         V R GGEEF    + +   EA  +A  +R ++E
Sbjct: 166 TYGHDAGDAVLKALSKVLRQAVRASDMVIRFGGEEFLIVLVDTPCTEADQVAEKIRAMVE 225

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              +  +   +I  TIS G+++     +     +  AD ALY AK++GRNRVV F++  
Sbjct: 226 ALTVQ-AGTVTIRKTISIGLSDFPTDSDTFWQAVKFADVALYQAKENGRNRVVRFNESM 283


>gi|299133792|ref|ZP_07026986.1| diguanylate cyclase [Afipia sp. 1NLS2]
 gi|298591628|gb|EFI51829.1| diguanylate cyclase [Afipia sp. 1NLS2]
          Length = 355

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 9/182 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           +  L  S   I   S  D L+ L N   F  +L          +E LS++  DID+FK  
Sbjct: 164 IASLQDSLEAIRTESLTDPLTSLGNRKYFDRALDAAVEHAQQNSEPLSLLMIDIDHFKSF 223

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           NDN+GH  GD+V+  ++  L           R GGEEFA     +S ++A  +A+++R+ 
Sbjct: 224 NDNYGHLTGDQVLRLVALALKANIKGQDLTARYGGEEFAVILPNTSMRQALAVADNIRRA 283

Query: 203 IENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + + Q+   S   I   +TISAG++     +    +I RAD  LY AK+ GRNRV+C +D
Sbjct: 284 VMSKQLKKKSTGEILGRVTISAGVSVFQSGDDAPALIDRADACLYAAKRHGRNRVICEAD 343

Query: 261 IE 262
            E
Sbjct: 344 PE 345


>gi|218661629|ref|ZP_03517559.1| hypothetical protein RetlI_20116 [Rhizobium etli IE4771]
          Length = 306

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 87/196 (44%), Gaps = 13/196 (6%)

Query: 77  TISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NE 127
           T   ++  I+ +   E  L +S  ++  L+  D L+G++N  AF              N 
Sbjct: 100 TAMAVVSDITATKQAEIALRLSAEQLRNLAETDGLTGIVNRRAFDEIFARETAGSARKNT 159

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALG 186
             S++  DID FK  ND +GHP GD+ +  +S  L   V      V R GGEEF      
Sbjct: 160 PFSLLMVDIDRFKAYNDTYGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFVVFLPD 219

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQA 243
           +S + A I+A    + +    I  S      +T S GI+           + ++  AD A
Sbjct: 220 TSAKGAMIVAEQFARRLTKENILHSGSEFGRVTASIGISCATGATLRASPNRLLAEADTA 279

Query: 244 LYVAKKSGRNRVVCFS 259
           LY AK  GRNR++  S
Sbjct: 280 LYEAKTQGRNRILAHS 295


>gi|207728382|ref|YP_002256776.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           MolK2]
 gi|206591628|emb|CAQ57240.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           MolK2]
          Length = 461

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 21/235 (8%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           + +F+A      +I+  +     + G+         LV++   ++L + Y+    L+   
Sbjct: 236 YPLFVAVGTATDDIYDNWKARAWWIGV---------LVVLFNVVTLAMAYLFAQHLERRI 286

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
               R ++L+  D L+GL N  A    L           + LS++  D+D+FK  ND +G
Sbjct: 287 EEQRRHAELAATDALTGLANRRALDERLDAEWRRAARERQPLSVLMIDVDHFKAYNDQYG 346

Query: 148 HPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           HP GD  +  ++  +            R GGEEF     GS    A ++A  +R  I+  
Sbjct: 347 HPDGDVALQAVARCIQANLRRPGDLAARYGGEEFCVVLPGSDLGSANVVAETIRHAIQAL 406

Query: 207 QINISSGPSIHITISAGIAERCHKEPIS----TIIYRADQALYVAKKSGRNRVVC 257
            I  +   +  +T+S G A             T+   AD  LY AK SGRNR V 
Sbjct: 407 DIPHARSDAAVLTVSIGAASGTPAASGEQRTATLTKAADAQLYRAKTSGRNRTVA 461


>gi|163759598|ref|ZP_02166683.1| putative sensory box/GGDEF family protein [Hoeflea phototrophica
           DFL-43]
 gi|162283195|gb|EDQ33481.1| putative sensory box/GGDEF family protein [Hoeflea phototrophica
           DFL-43]
          Length = 340

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 12/188 (6%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKL-----SIVFFDI 136
            ++   I+ EL    N   Q++  D L+GL N  AF   L   YNE       +++  DI
Sbjct: 125 AHVVTRIINEL----NTYKQIANTDMLTGLANRRAFDIQLEGIYNEPGKLPQTALIICDI 180

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK  ND +GH +GD V+  +++ +           R+GGEEFA     +S Q+  ++A
Sbjct: 181 DHFKSFNDTYGHAIGDTVLKTVAETIRESLPANATPARIGGEEFAIIVEKASLQQVQLIA 240

Query: 197 NDLRKIIENSQ-INISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
              R+ IE+   I+  SG     +TIS GI        +S +  +AD ALY +KKSGRNR
Sbjct: 241 ETARRAIEDRMFIDEESGTDCGKVTISMGICLADVAAKMSELYQKADLALYASKKSGRNR 300

Query: 255 VVCFSDIE 262
              F +  
Sbjct: 301 CTVFDESM 308


>gi|146310192|ref|YP_001175266.1| diguanylate cyclase [Enterobacter sp. 638]
 gi|145317068|gb|ABP59215.1| diguanylate cyclase [Enterobacter sp. 638]
          Length = 354

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 74/271 (27%), Positives = 123/271 (45%), Gaps = 26/271 (9%)

Query: 8   FLSIWLCHEKN---LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTP------- 57
           F  IW  H      L +  P TF+    +   +FI ++ F ++I  F +   P       
Sbjct: 78  FGGIWAWHIAYKFTLVTEDPFTFL-LLGLLSVLFIGSLAFASDIKAFTLHSLPTFVVCMW 136

Query: 58  FYGLEYIL--VENLSLVIISITISLLLG----YISGSILKELFISYNRISQLSRIDCLSG 111
           F   E+ L  + +L+L +  I I  ++       +  +L  L      ++ LS +D L+G
Sbjct: 137 FSQHEHWLRVIYSLALPMAGIAIHHVIQKRNDRFAKQLLYRLLEERETLNDLSMMDPLTG 196

Query: 112 LLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           L N     + L         E   ++  DID+FK  ND++GH +GD+ +  +S  +    
Sbjct: 197 LYNRRGLNNRLENLPTLEQGEHF-VLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAV 255

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGI 224
            +   V R GGEEF       + ++A   A  +R+ + + +I      S+  ++TIS GI
Sbjct: 256 RSRDIVARFGGEEFMVLLTSVTLEQARQTAERIRQKVYDLKIPHMFNESVATNVTISIGI 315

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A     E I   + +AD+ALY AK  GRN +
Sbjct: 316 AIF-EGEDIEGALGKADKALYEAKHRGRNNI 345


>gi|167615849|ref|ZP_02384484.1| GGDEF domain protein [Burkholderia thailandensis Bt4]
 gi|257142438|ref|ZP_05590700.1| GGDEF domain-containing protein [Burkholderia thailandensis E264]
          Length = 489

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 13/196 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE----- 127
           + ++   ++  Y++ S+ ++   +   +++L+  D L+GL N  A   +L          
Sbjct: 290 VFALIFVVMSAYLAHSLWRK-STAEAALARLAGTDSLTGLHNRRALDETLEREWRRAVGG 348

Query: 128 --KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAA 184
              L+I+F DID+FK+ ND +GH VGD+V+A +S  +          V R GGEEF    
Sbjct: 349 ERPLAILFVDIDHFKRYNDTYGHQVGDEVLATVSRCIAQQAARLGDVVARYGGEEFVVVL 408

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRA 240
             +    A ++A  +R  +    I         +T+S G+A           I+ I+  A
Sbjct: 409 PDTPRGGALVVAERVRLGVRMLGIEHEGSEVGFVTVSVGVAVWQPDGARAPHIAAIVEAA 468

Query: 241 DQALYVAKKSGRNRVV 256
           DQALY AK +GRNRVV
Sbjct: 469 DQALYQAKAAGRNRVV 484


>gi|254230006|ref|ZP_04923406.1| ggdef domain protein [Vibrio sp. Ex25]
 gi|151937447|gb|EDN56305.1| ggdef domain protein [Vibrio sp. Ex25]
          Length = 320

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 63/180 (35%), Positives = 94/180 (52%), Gaps = 12/180 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L  +   +S++SR D L+GL N + +  SL          +   S+V FDID+FK++ND 
Sbjct: 145 LKETNQHLSEISRKDGLTGLFNRAYWEQSLKEEFAHLKVIDGPCSLVIFDIDHFKKVNDT 204

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GHP GD+VI   S  L     +    GR GGEEF      +++++A   A  LRK IE 
Sbjct: 205 YGHPTGDEVIRRTSSLLRKTARSSDVCGRFGGEEFTVLLPHTNQEQACYFAERLRKRIEQ 264

Query: 206 SQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             + +     I+ TIS G+ E   + E  +  +  AD ALY AK++GRN+       EN+
Sbjct: 265 EIVKVED-FLINYTISIGVCEYKPYFETHTQWLKSADAALYRAKENGRNQTCLH---END 320


>gi|148262278|ref|YP_001228984.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter uraniireducens Rf4]
 gi|146395778|gb|ABQ24411.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter uraniireducens Rf4]
          Length = 309

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 85/177 (48%), Gaps = 10/177 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           ++  EL  S   +  LS  D L+ L N    + +L           + LS+V  DID+FK
Sbjct: 126 ALQDELKRSNELLKDLSNTDPLTHLHNRRYLMEALEREFLRASRKGDGLSLVLLDIDHFK 185

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GHP GD V+  ++  L  +        R GGEEF      +S   A   A   R
Sbjct: 186 KVNDTYGHPEGDNVLVAVASLLQNMVRRYDVSARYGGEEFVVVLPETSLHHALQFAERCR 245

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255
             +++      +   + IT+S G+A       + + ++  +AD+ALY AK+ GRNRV
Sbjct: 246 VAVQDISFG-GALKGLTITVSLGVASYPSGKVDCVDSLFRQADEALYRAKQGGRNRV 301


>gi|326318358|ref|YP_004236030.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375194|gb|ADX47463.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 357

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 62/233 (26%), Positives = 105/233 (45%), Gaps = 22/233 (9%)

Query: 41  TVIFIANIFLFYIGL----------TPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
           T + +  +F+FYIG+           P   L   +    ++ ++    +    Y  GS+L
Sbjct: 127 TPVMLLALFVFYIGMYELSRRYGAQAPLGDLGLSVTHAFNVAVVFAMAAYTARYYYGSVL 186

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +    +  R+   +  D L+GL N           I+      +  ++V  DID+FK+IN
Sbjct: 187 R----AERRLEDQAATDPLTGLSNRRRLASLAQERIAQARQAGQPTAVVIADIDHFKRIN 242

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+V+  +++ L         + R GGEEF       +  +A  LA  +R  +
Sbjct: 243 DTHGHEAGDRVLVHVAELLARSSRARDLLARWGGEEFLVVMPTCALADAQALAERMRAAV 302

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +      +  +I  ++S G+A+    E +   I RAD ALY +K +GRNRV 
Sbjct: 303 ADRPARHGA-LAIPASLSLGVAQLRSGESLEAAIARADGALYASKHAGRNRVT 354


>gi|190574856|ref|YP_001972701.1| putative transmembrane GGDEF domain regulatory protein
           [Stenotrophomonas maltophilia K279a]
 gi|190012778|emb|CAQ46407.1| putative transmembrane GGDEF domain regulatory protein
           [Stenotrophomonas maltophilia K279a]
          Length = 481

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/191 (34%), Positives = 96/191 (50%), Gaps = 15/191 (7%)

Query: 78  ISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128
           I  LLGY   S+L ++ I   R  +  L+R D L+GL N  +F  SL   + +       
Sbjct: 280 IGSLLGYALRSVLSQIEIQRQRDELETLARRDPLTGLGNRRSFDESLDRAHRRARRQDQG 339

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGS 187
           L+++  DID+FK++ND +GHP GD+ +  ++  L          + R GGEEF AA    
Sbjct: 340 LAVLMIDIDHFKRLNDTYGHPEGDRRLRAVAGILDGCLQRGDDLLARYGGEEFIAALPSP 399

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALY 245
               A  L   LR  +E + +     P   +TIS G+A +   E      ++ RADQALY
Sbjct: 400 DATHALGLGERLRASVEAAALP---APVATVTISIGVAWQAPGEDGDPRGLVERADQALY 456

Query: 246 VAKKSGRNRVV 256
            AK +GRN V 
Sbjct: 457 RAKHAGRNCVR 467


>gi|124515412|gb|EAY56922.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptospirillum rubarum]
          Length = 703

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 58/189 (30%), Positives = 84/189 (44%), Gaps = 11/189 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           I    + E      RI+  +  D L+ L N   F   L             +++++ D+D
Sbjct: 246 IVFRDVTEKRKLEQRIAYQANFDSLTDLPNRHLFQDRLSRAVGQAHRTGSLVALLYLDVD 305

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA 196
           YFK IND  GHP GD+V+  L  +L  V      + R+GG+EFA          EA +L 
Sbjct: 306 YFKNINDRMGHPYGDRVLVELGKRLKTVVRETDTIARIGGDEFAVILCDLHDRSEAMVLG 365

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             L  +IE +      G    +T+S G+A         +T+I  AD ALY  K+ GRN +
Sbjct: 366 RRL--MIEAAMPFRIDGSRADLTVSIGVALYPEDGTDATTLIRNADIALYQVKREGRNNI 423

Query: 256 VCFSDIENN 264
             FS   N 
Sbjct: 424 AFFSREMNR 432


>gi|326796878|ref|YP_004314698.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326547642|gb|ADZ92862.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 317

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 60/172 (34%), Positives = 89/172 (51%), Gaps = 9/172 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
           L  +  ++ Q+S+ D L+ L N +    +LG              +V  DID+FK++ND 
Sbjct: 145 LVEANRKLDQMSKTDGLTDLNNRANLDRALGMIFSSYTKNKGTHCLVMADIDHFKKVNDT 204

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GHPVGD+V+  ++  L        FVGR GGEEFA     + ++ A      +R+ I  
Sbjct: 205 YGHPVGDEVLKDVAKILGGSSRRGDFVGRFGGEEFAILLPNTGKEGAFKYCEKIRETIAK 264

Query: 206 SQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
             I  + G SI+ITIS G+ E    E  +S  + +AD ALY AK  GRN+  
Sbjct: 265 RDIKTAQG-SINITISLGVCELSDAEKDVSAWLSKADDALYRAKSEGRNKTC 315


>gi|218440595|ref|YP_002378924.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Cyanothece sp.
            PCC 7424]
 gi|218173323|gb|ACK72056.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Cyanothece sp.
            PCC 7424]
          Length = 1262

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 10/182 (5%)

Query: 86   SGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDY 138
             G + ++L  +   + +LS +D L+ + N   F          L    + LS++  D+D+
Sbjct: 1078 QGELYQQLESANLELKKLSCLDGLTQVANRHRFDMYLDQEWRRLMRSQQFLSLILCDVDH 1137

Query: 139  FKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK  ND +GH  GD+ +  ++  +    G P   V R GGEEFA     +  + A  +A 
Sbjct: 1138 FKGYNDTYGHLAGDQCLQQVAQVIKNAVGRPADLVARYGGEEFAIILPDTPLRGALYVAE 1197

Query: 198  DLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
             +R+ ++   I         +T+S+G+A       +S   +I  AD+ALY AK +GRN+V
Sbjct: 1198 QIRQQVQYLTIPHPQSTHQWVTLSSGVASFIPSAALSPKALINAADEALYQAKANGRNQV 1257

Query: 256  VC 257
            V 
Sbjct: 1258 VF 1259



 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 85/205 (41%), Gaps = 19/205 (9%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           + ++ +LG     I+ +  ++   I   +  D ++ L N   F   L        +    
Sbjct: 387 LKLAEVLGLHLYMIVIQQRLT-RLIRHQASYDVITQLPNGIIFNHRLSLALVDAVNQGNM 445

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF----VGRLGGEEFAAAA 184
           L +V  D++ FK+IND+ GH VGD ++  + D+L     T       + R  G  F    
Sbjct: 446 LGVVILDLNQFKRINDSLGHGVGDFLLTKVRDRLQNALDTYSIFNPLLARWHGARFIILL 505

Query: 185 LGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQ 242
              S   E+ ++   L    +  +       +I++  S GIA      +    ++  A+ 
Sbjct: 506 SKLSYSDESVMVCQKLLNDFQ--EPFYVQSQAIYLGASLGIALAPYDGDTAEILLKNAES 563

Query: 243 ALYVAKKSGRNRVVCF---SDIENN 264
           A+Y AKK G+N    +   SD + N
Sbjct: 564 AMYEAKKQGKNTYQIYRPGSDHDKN 588


>gi|261250469|ref|ZP_05943044.1| putative sensory box/GGDEF family protein [Vibrio orientalis CIP
           102891]
 gi|260939038|gb|EEX95025.1| putative sensory box/GGDEF family protein [Vibrio orientalis CIP
           102891]
          Length = 325

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 100/177 (56%), Gaps = 7/177 (3%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-SYNEK----LSIVFFDIDYFKQIND 144
           + +  +    + +L+  D L+G+LN  AFI  L   +N      LS +  DID+FK+IND
Sbjct: 131 ITQSHLHETELKRLAETDELTGILNRRAFIQGLECEFNAPAPLLLSCLMLDIDHFKEIND 190

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+VI  ++     +  +  ++GRLGGEEF      ++  +A  +A  +R+ IE
Sbjct: 191 QVGHLSGDEVITQVAHICQGLIRSSDYIGRLGGEEFGIVLSRTNAIQAYDIAERIRQSIE 250

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +  ++  G  I+ T+S GIAE   +   I  ++ +AD+A+Y +K++GRN+V  + D
Sbjct: 251 TTPCHV-DGHIIYPTVSIGIAELNSQVSSIKELLVQADKAMYYSKQTGRNQVTLYYD 306


>gi|114568673|ref|YP_755353.1| response regulator receiver modulated diguanylate cyclase
           [Maricaulis maris MCS10]
 gi|114339135|gb|ABI64415.1| response regulator receiver modulated diguanylate cyclase
           [Maricaulis maris MCS10]
          Length = 324

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 81/174 (46%), Gaps = 10/174 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144
            L     +  +L+  D L+G  N  AF+  L   ++        LS+V  D+D+FK +ND
Sbjct: 133 RLVRMQKQFKRLAETDALTGAANRRAFMQYLEIQSQRATRDDIPLSVVMIDLDHFKSVND 192

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD V+      +         +GRLGGEEF     G+    A I    +R  +E
Sbjct: 193 THGHATGDTVLIEAVKSIQACLRDNDMLGRLGGEEFCVILPGAGLFSAGIAGERIRAAVE 252

Query: 205 NSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRV 255
              I+   G  + +T S G+A     +      T++  AD ALY AK++GRN+V
Sbjct: 253 AMTISTDEGVPVPVTASLGVASLTDGDLISAPDTLLQTADVALYRAKETGRNKV 306


>gi|119774894|ref|YP_927634.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B]
 gi|119767394|gb|ABL99964.1| diguanylate cyclase [Shewanella amazonensis SB2B]
          Length = 355

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 64/181 (35%), Positives = 90/181 (49%), Gaps = 9/181 (4%)

Query: 88  SILKELFISYNRISQLS---RIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFK 140
           S+ +EL      I++LS     D L+GL N  AF S L         K S++  DID+FK
Sbjct: 175 SMDQELNHLRAEITELSVISLTDKLTGLNNRRAFESRLAQEFLPSTPKCSLLVIDIDHFK 234

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q ND +GH  GDKV+ +++  L         V R GGEEF      +S ++AA +A  LR
Sbjct: 235 QFNDTWGHNAGDKVLVYVAQNLKQAVKGEDLVARYGGEEFVIVLKDTSAEDAANIAEKLR 294

Query: 201 KIIENSQINISSG--PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             I N ++ +         +++S G+A+    E       RAD ALY AK +GRNRV   
Sbjct: 295 DRIANKKLTLKKDNLDLGKVSVSIGVAKAYANETPEQFFERADGALYRAKGTGRNRVCLA 354

Query: 259 S 259
            
Sbjct: 355 D 355


>gi|91224261|ref|ZP_01259524.1| GGDEF family protein [Vibrio alginolyticus 12G01]
 gi|269965490|ref|ZP_06179608.1| GGDEF family protein [Vibrio alginolyticus 40B]
 gi|91191172|gb|EAS77438.1| GGDEF family protein [Vibrio alginolyticus 12G01]
 gi|269829853|gb|EEZ84084.1| GGDEF family protein [Vibrio alginolyticus 40B]
          Length = 337

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/208 (32%), Positives = 104/208 (50%), Gaps = 11/208 (5%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSI------LKELFISYNRISQLSRIDCLSGLL 113
            +E ++V    LV  S  I     +++  +      +  L      + Q +  D LS L 
Sbjct: 128 SIEEVMVVIRQLVAESHEIRHSTKFLNSQLTNASEEISRLKNQLAEVQQDALFDGLSNLY 187

Query: 114 NHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           N  AF   L S    N+ ++++  DID+FK  NDN+GH  GD V+  ++ +L       +
Sbjct: 188 NRRAFDKDLSSLIASNQAMTLIMLDIDHFKSFNDNYGHLFGDTVLKAIARRLQQSCRDGI 247

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH-ITISAGIAERC 228
              R GGEEFA      S + A   A+ LR++IE  +I +  SG  +H IT S G+AE  
Sbjct: 248 CAYRFGGEEFALIVPNKSLRIARQYADTLRRMIEKLRIRDKRSGTQVHSITASFGVAEFE 307

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256
             +    +I +AD+ LY AK+ GRNRV+
Sbjct: 308 PGDTPEALINKADKQLYEAKQLGRNRVM 335


>gi|90424331|ref|YP_532701.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
 gi|90106345|gb|ABD88382.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
          Length = 355

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 11/184 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           +  L  +   I   S  D L+GL N   F  ++           + L+++  DID+FK  
Sbjct: 164 INNLQHNLEAIRAESLTDPLTGLGNRKHFDRAVDDAVRCASASRQPLALLMIDIDHFKSF 223

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD+V+  +   L         + R GGEEFA     +  ++A  +A ++R+ 
Sbjct: 224 NDTYGHLTGDQVLRLVGMSLKQSINGQDIMARYGGEEFAVVLPNTGLRQAIAVAENIRQT 283

Query: 203 IENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + + ++   S   I   +TIS G++     +   ++I RAD  LY AK++GRNRV+C  +
Sbjct: 284 VTSKELKKKSTGEILGRVTISVGVSTLRADDDTDSLIERADSCLYAAKRNGRNRVIC--E 341

Query: 261 IENN 264
           I+ +
Sbjct: 342 IDRD 345


>gi|78223826|ref|YP_385573.1| diguanylate cyclase/phosphodiesterase [Geobacter metallireducens
           GS-15]
 gi|78195081|gb|ABB32848.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Geobacter metallireducens GS-15]
          Length = 821

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + +   +  +I +L+  D L+GL N    +  L         + E ++++F D+D FK 
Sbjct: 371 DITDRKRAEEKIRRLAYYDSLTGLPNRPLMMDRLSQAIRHARRHGEVVALLFLDLDRFKD 430

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLR 200
           +ND+ GH VGD+++  ++ +L         + RLGG+EF   A G     +A++LA+ + 
Sbjct: 431 VNDSQGHRVGDRLLQEVAARLSGCTRESDTLARLGGDEFVIIAPGVRAATDASLLADKIL 490

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +   +       ++HI  S GI            ++ RAD A+Y AK  G N    FS
Sbjct: 491 AALA--EPFTLDRQTLHIATSIGIVLFPSDGGNGEMLLQRADMAMYAAKDRGGNSYRFFS 548

Query: 260 DIENNTC 266
              N   
Sbjct: 549 AEMNTRA 555


>gi|238789818|ref|ZP_04633600.1| hypothetical protein yfred0001_29710 [Yersinia frederiksenii ATCC
           33641]
 gi|238722177|gb|EEQ13835.1| hypothetical protein yfred0001_29710 [Yersinia frederiksenii ATCC
           33641]
          Length = 499

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 9/163 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++   ++ D ++GL N     ++L       +  S++  DID+FK IND +GH VGD+VI
Sbjct: 341 KLKFEAQTDPMTGLYNRRGLATTLEPISQLEQHFSVIALDIDHFKAINDTYGHDVGDEVI 400

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L+ Q+         + R GGEEF     G++   A  +A+ LR  +E   I     P+
Sbjct: 401 KQLAVQIRESSRDTDILCRSGGEEFLMLLPGTTPDVAIQVAHRLRHNVEMMVI-----PN 455

Query: 216 IH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I  ITIS G+A           + RAD+ALY AK  GRNRV  
Sbjct: 456 IRPITISLGVAYWSGDGIPEDALKRADEALYRAKDQGRNRVEI 498


>gi|170721603|ref|YP_001749291.1| diguanylate cyclase [Pseudomonas putida W619]
 gi|169759606|gb|ACA72922.1| diguanylate cyclase [Pseudomonas putida W619]
          Length = 532

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 61/255 (23%), Positives = 117/255 (45%), Gaps = 28/255 (10%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI--------------LV 66
           + +P   M    + + + ++ +  +  +++ Y    P   L +                +
Sbjct: 274 ALAPLGEMTRKVLLYILPVSIIGLLLMLWMTYRLTLPLRQLAHSASHLSATQTGEQLRRI 333

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLG 123
           +   + + +I  +LL G     +L+E F    ++ Q ++ D L+GL N  A    + +L 
Sbjct: 334 DAWYVEVAAIRRALLTGE---QLLQEKFG---KLRQQAQSDALTGLANRRAMQLALDALM 387

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
             +   +++  DID+FK++ND FGH  GD+V+  L++ L           R+GGEEF   
Sbjct: 388 QSSRAFAVLALDIDHFKRVNDTFGHDAGDEVLKHLAELLRHNSRQDDLPCRVGGEEFTML 447

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQ 242
              +   +A  +A  +R  +E +           +T+S G+A  R   +   +++ +AD+
Sbjct: 448 LPDTGLADARRIAERIRSAVEQADSPHVG----KLTVSIGVACRRPDTQQAGSVLKQADE 503

Query: 243 ALYVAKKSGRNRVVC 257
            LY AK +GRNRV  
Sbjct: 504 QLYKAKHNGRNRVEV 518


>gi|160898227|ref|YP_001563809.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Delftia acidovorans SPH-1]
 gi|160363811|gb|ABX35424.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Delftia acidovorans SPH-1]
          Length = 828

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 10/184 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
             L +  ++  RI QL+  D L+GL N       + +  E         SI+F D+D FK
Sbjct: 359 RDLTQQRVAQQRIEQLAYSDALTGLPNRLNLTERVDAAIEAARAGGTVFSILFIDLDRFK 418

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND+ GH  GD+V+  ++ +L         + RLGG+EF     G + + AA +A  + 
Sbjct: 419 IINDSLGHQFGDRVLKLVAQRLSDCMRPVDILCRLGGDEFVLYLQGCNAELAASVARRIL 478

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +E  +  +  G    +  S G+A+       +  +I +AD A+Y  K+ GR     + 
Sbjct: 479 QEME--RPFLLDGLGFSVQCSIGVAQYPADGLTLDELIRQADTAMYRVKERGRGHFSFYQ 536

Query: 260 DIEN 263
              +
Sbjct: 537 PQMS 540


>gi|158314825|ref|YP_001507333.1| serine/threonine protein kinase [Frankia sp. EAN1pec]
 gi|158110230|gb|ABW12427.1| serine/threonine protein kinase [Frankia sp. EAN1pec]
          Length = 1637

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 53/200 (26%), Positives = 86/200 (43%), Gaps = 9/200 (4%)

Query: 65   LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
            +   L++ + ++ +   L        ++L  +  ++ QLS  D L+GL N       L +
Sbjct: 1428 IARQLAVSLENVAMYTSLERKVTERTRQLTAANQQLEQLSITDPLTGLANRRRLDEVLDA 1487

Query: 125  YNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                       +++   DID+FK  ND+FGH  GD+ +  ++  L           R GG
Sbjct: 1488 EWHRARQQATPIALAMVDIDHFKLYNDHFGHATGDRCLQRVAACLAENTRDTDLAARYGG 1547

Query: 178  EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPIST 235
            EEFA     +    A  +A+ LR  +  +           IT+S G+A       E    
Sbjct: 1548 EEFAIVMPTTDTGAATRIAHRLRTAVAEAAEPHPLVAGGIITVSIGVAAITPTPDEHAEG 1607

Query: 236  IIYRADQALYVAKKSGRNRV 255
            ++  AD  LY AK+ GRNRV
Sbjct: 1608 LVDLADVELYRAKRGGRNRV 1627


>gi|330959085|gb|EGH59345.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 723

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 19/220 (8%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G   +L  ++  + ++ T  LL+   +   + +L  +  +I  L+  D L+GL N +  +
Sbjct: 239 GDPLVLDISVDFITLNDTACLLM---NARDIGQLKNAQAQIHHLAYHDPLTGLPNRALLM 295

Query: 120 SSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L          N + +++F D+D+FK IND+ GHPVGD V+  ++ +L         V
Sbjct: 296 DRLSQQLSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLNVVAARLEASVRQEDTV 355

Query: 173 GRLGGEEFAAAALGSS------EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
            RLGG+EF     G          +  +L+++LR ++         G  + +T S GI  
Sbjct: 356 ARLGGDEFVVLICGLDGSLDEVTHKVRVLSDNLRDLLAEPMF--LDGHRLQVTPSIGIVL 413

Query: 227 RCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                   + ++ RAD ALY AK SGRN    F       
Sbjct: 414 IPDDGLTPADLLKRADIALYRAKDSGRNTAQFFHSSMQQA 453


>gi|260223174|emb|CBA33472.1| hypothetical protein Csp_B19230 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 886

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 12/193 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           +G  +     +   I +L+  D L+GL N    I  L           +  +++F D+D 
Sbjct: 439 TGRDISARKAAEAEIERLAFFDALTGLPNRRMLIDRLKHALDSSTRNRQHGALLFIDLDN 498

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILA 196
           FK +ND  GH +GD ++  ++ +L     +   V RLGG+EF      L +    AA  A
Sbjct: 499 FKVLNDTLGHHMGDLLLQQVAQRLQDCVRSADTVARLGGDEFVVMLEELDADPLLAATQA 558

Query: 197 NDLRKII--ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
             + K +    ++       ++H + S G+     H + I  ++ RAD A+Y AK +GRN
Sbjct: 559 ELVAKKVLGSLNKQFAMGNHNMHSSPSIGVTLFFQHNDSIEELLKRADLAMYQAKGAGRN 618

Query: 254 RVVCFSDIENNTC 266
            +  F        
Sbjct: 619 TLRFFDPDMQAAA 631


>gi|307152144|ref|YP_003887528.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
 gi|306982372|gb|ADN14253.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
          Length = 360

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 92/176 (52%), Gaps = 9/176 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +Y ++  L  ID L+ + N  A              Y+   SI+  D+DYFK IND
Sbjct: 178 ELKAAYAQLELLVNIDPLTNVANRRALFKFGEQELYRAQRYHCSFSILLIDLDYFKHIND 237

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           ++GH +GD V+  + + +         +GR GGEEF      +  +EA I+A  +RK I 
Sbjct: 238 SYGHAMGDTVLKIVCNAINNSIRQIDLLGRFGGEEFVVILPKTKLKEAIIVAERIRKTIS 297

Query: 205 NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
              + +    ++ IT S G+A    K+  +  +++RAD+ LY+AK+ GRN+VV + 
Sbjct: 298 ELSL-LVGQKTLKITASIGLATYNQKDATLDEVLHRADKGLYLAKERGRNQVVIYD 352


>gi|218440454|ref|YP_002378783.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp. PCC
            7424]
 gi|218173182|gb|ACK71915.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp. PCC
            7424]
          Length = 1079

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 77/177 (43%), Gaps = 8/177 (4%)

Query: 94   FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNF 146
                  +   S  D L+ L N      SL             + ++  D+D+FK+ ND F
Sbjct: 901  LQLRESLKAQSIKDSLTDLYNRRYMEESLKREISLAQRKQHSVGLIMIDVDHFKEFNDTF 960

Query: 147  GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
            GH  GD V+  +S+ L++   +     R GGEEF      +S  ++   A  +R+ I+  
Sbjct: 961  GHKAGDLVLQEVSNFLMINVRSGDIACRYGGEEFLLILPEASLTDSQQRAEQIRQGIKQL 1020

Query: 207  QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
                       +T+S G+A    H      +I  AD ALY AKK GR+RVV FS   
Sbjct: 1021 DFKRYDQSFRSVTVSVGVASFPDHGTNNDQLIQAADTALYQAKKQGRDRVVVFSPFM 1077


>gi|89094043|ref|ZP_01166987.1| PAS:GGDEF protein [Oceanospirillum sp. MED92]
 gi|89081717|gb|EAR60945.1| PAS:GGDEF protein [Oceanospirillum sp. MED92]
          Length = 334

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 88/172 (51%), Gaps = 7/172 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL        +LS  D L+GL N   F + L         Y+   ++ FFD+D FK++ND
Sbjct: 161 ELLERERVYKELSITDSLTGLHNSRHFYNQLEDALETARRYHHPFTLCFFDLDDFKKLND 220

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N GH  GDKV+      +     T     R GGEEFA     +  + A+++A  +R+ ++
Sbjct: 221 NHGHLTGDKVLETFGTLVRSSLRTLDSGYRYGGEEFAILLPSTDVEGASVVAERVRESLQ 280

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           N Q  +  G  +  ++S GI    + + +  +++RAD ALY AK+ G+N VV
Sbjct: 281 NYQFVLEGGEKLQASVSIGITSFKNGDNVQALMHRADSALYEAKRKGKNCVV 332


>gi|71279148|ref|YP_267210.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71144888|gb|AAZ25361.1| sensory box/GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 451

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 89/188 (47%), Gaps = 10/188 (5%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LS 130
           +  L+G+   + + ELF        L+  D L+ L N   FI       ++       ++
Sbjct: 265 LPALIGF--STDVTELFKLKEEFKLLANTDPLTNLYNRRFFIEQAEKEYQRAKRYSLSMT 322

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  DID+FK IND FGHP GD+V+  ++ QL         + R+GGEEF+     +S  
Sbjct: 323 LISIDIDHFKSINDQFGHPAGDQVLIEIAKQLKASLRQTDILARIGGEEFSILLPETSAM 382

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKK 249
            A   A  +++      I       I++++S G++      +    +  RAD+ALY AK 
Sbjct: 383 SAMTFAERIKEEQSRLIITGDWQGEINLSVSIGVSSLIASDKAFDVLFSRADKALYQAKN 442

Query: 250 SGRNRVVC 257
           +GRN V  
Sbjct: 443 TGRNTVCY 450


>gi|158316142|ref|YP_001508650.1| serine/threonine protein kinase [Frankia sp. EAN1pec]
 gi|158111547|gb|ABW13744.1| serine/threonine protein kinase [Frankia sp. EAN1pec]
          Length = 1636

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 87/207 (42%), Gaps = 16/207 (7%)

Query: 67   ENLSLVIISITISLLLGYISGSILK-------ELFISYNRISQLSRIDCLSGLLNHSAFI 119
            E + L+   + +SL    +  S+ +       +L  +  R+ QLSR D L+GL N     
Sbjct: 1422 EGIMLIAGQLAVSLDNALVYASLERKVAERTQQLAAANRRLEQLSRTDSLTGLPNRRRLE 1481

Query: 120  SSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
              L +           +++   DID+FK  ND+FGH  GD+ +  ++  L     +    
Sbjct: 1482 EVLDAEWHRARHQAAPIALAMVDIDHFKLYNDHFGHAAGDRCLQRVAACLAENVRSTDMA 1541

Query: 173  GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHK 230
             R GGEEFA     ++   A  LA  L   +              +T+S G+        
Sbjct: 1542 ARYGGEEFAVVMPDTNSDTAVQLARHLCSAVAELAEPHPLAIDCIVTVSIGVTAVIPTPG 1601

Query: 231  EPISTIIYRADQALYVAKKSGRNRVVC 257
            +  +  +  AD  LY AK+ GRNRV  
Sbjct: 1602 DTTAVFVELADVELYRAKRGGRNRVEI 1628


>gi|169827553|ref|YP_001697711.1| response regulator receiver domain-containing protein
           [Lysinibacillus sphaericus C3-41]
 gi|168992041|gb|ACA39581.1| response regulator receiver domain protein (CheY-like)
           [Lysinibacillus sphaericus C3-41]
          Length = 589

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 75/260 (28%), Positives = 113/260 (43%), Gaps = 36/260 (13%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG------ 83
           Y+ I +++ ++++I  A  FL  I   PF+   +  V  +  +  SI +SL LG      
Sbjct: 323 YYIIGWTVLLSSIIVQALAFLSII---PFHPRIFEEVPAIGAIFESIFLSLALGDKINII 379

Query: 84  ----------------YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
                           Y      KEL  +   +  L+  D L+ + N       L     
Sbjct: 380 KKEHQIMQETLNETLEYKVQERTKELESAKLELEALANTDRLTQIPNRVRLDDVLEKEFE 439

Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   LSI+  DID+FK +ND FGH VGD V+   +D L         VGR GGEEF
Sbjct: 440 QATGSGTPLSIILLDIDHFKAVNDEFGHQVGDLVLRHAADLLKNYVRVEDTVGRWGGEEF 499

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                 +  ++A  L+ +LR+ +E     +        T S G+      + I +++ R 
Sbjct: 500 LVVCPRTPLKDAVHLSENLRQQLEQHSFPVVHHK----TSSFGVTSFVMGDTIHSLLSRC 555

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D+ALY AK+ GRNRV  F D
Sbjct: 556 DKALYKAKEHGRNRVEYFQD 575


>gi|116052743|ref|YP_793060.1| motility regulator [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587964|gb|ABJ13979.1| motility regulator [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 1415

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 15/192 (7%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            S + E   S  RI +L+  D L+ L N + F   L           + + ++F D+D FK
Sbjct: 962  SDISERKASERRIHRLAYYDALTHLPNRTLFQDRLHTALQQAERNGQWVVLMFLDLDRFK 1021

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAIL 195
             IND+ GH  GD+++  ++ +L         V R+GG+EF        ++E     A  +
Sbjct: 1022 PINDSLGHAAGDRMLQEVATRLSACVSQDDTVARMGGDEFTLLLPSQGDREIALKRAIQV 1081

Query: 196  ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            A  +   +   +     G    +T S G+A        +S ++  AD A+Y AK+ G+N 
Sbjct: 1082 AELILGRLA--RPFTLEGREFFVTASIGVALSPQDGAELSLLMKNADTAMYHAKEMGKNN 1139

Query: 255  VVCFSDIENNTC 266
               +    N   
Sbjct: 1140 FQFYQAEMNARA 1151


>gi|90022108|ref|YP_527935.1| response regulator receiver modulated diguanylate cyclase
           [Saccharophagus degradans 2-40]
 gi|89951708|gb|ABD81723.1| response regulator receiver modulated diguanylate cyclase
           [Saccharophagus degradans 2-40]
          Length = 301

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 12/204 (5%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G    + + +   +++  +   L  I     ++L  +   + +L+  D L+G+ N  +F 
Sbjct: 97  GAHDFVSKPIEYPVLAARMRSALRLIQAK--RDLEKANKELERLATRDPLTGINNRRSFF 154

Query: 120 SSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
                       +   ++++  D D+FK IND +GH  GD+ +  +++           +
Sbjct: 155 KLAEAELTKTIRHGRDIALLMLDADHFKMINDTYGHAAGDEALLTITEICQNACRESDIL 214

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHK 230
            RLGGEEFA     ++ + A  +A  +R+  EN+ I   +  S  IT+S GI        
Sbjct: 215 ARLGGEEFAICCPDTNLEGAYAVAERIRQQCENTVIEH-NSASFGITLSIGITTFVPSQD 273

Query: 231 EPISTIIYRADQALYVAKKSGRNR 254
           + I+ ++ RAD  LY AK+ GRNR
Sbjct: 274 KSITEMLQRADNLLYQAKEMGRNR 297


>gi|300313918|ref|YP_003778010.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gi|300076703|gb|ADJ66102.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 515

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/204 (31%), Positives = 101/204 (49%), Gaps = 12/204 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           +SL I  +  + LL ++    L+    +  ++  L+R D L+ LLN  A   +L +  E+
Sbjct: 313 VSLAIFGLLTAWLLLHVRQE-LRRRVTAERQLEALARTDGLTDLLNRRALDEALQATWER 371

Query: 129 --------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEE 179
                    S++F D+DYFK  ND +GH +GD V+  ++  L   +       GR GGEE
Sbjct: 372 CQRNLGASFSVLFIDVDYFKAYNDTYGHKLGDTVLKEVAATLTARLPRHTDCAGRYGGEE 431

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTII 237
           F      +  Q A ++A  L   +    I  +S P   +TIS G+A  ER H   +  ++
Sbjct: 432 FVVLLEQTDLQGAQMMAQRLCDAVRERHIAHTSSPLAVVTISVGVATLERDHHRRVEDVL 491

Query: 238 YRADQALYVAKKSGRNRVVCFSDI 261
             AD ALY AK++GR+RV   S  
Sbjct: 492 NAADAALYRAKQAGRDRVHLSSQA 515


>gi|261342740|ref|ZP_05970598.1| signaling repeat/GGDEF domain/EAL domain protein [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315393|gb|EFC54331.1| signaling repeat/GGDEF domain/EAL domain protein [Enterobacter
           cancerogenus ATCC 35316]
          Length = 694

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/278 (23%), Positives = 120/278 (43%), Gaps = 21/278 (7%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVI--------FIANIFLFYIGLT 56
               +++WL      ++       +  +I   + IA +         F A+  L + G+ 
Sbjct: 151 AASLVALWLTFRLRHDAAQVALMRLGAAITMGVAIAGMHYAGMKAAQFPASTMLHHHGIN 210

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLL 113
             +    + V  LS++ I++ +S+L   +      +   L  +   ++QL+  D L+ L 
Sbjct: 211 GSWLAVLVSVIALSILGITLLVSILDARLQARTSLLASSLAEANRELAQLALQDTLTRLP 270

Query: 114 NHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N       LG             +++F D+D FK +ND +GH VGDK++  ++ +L+   
Sbjct: 271 NRLLLEDRLGQAISKADREGRHFALMFMDLDGFKTVNDAYGHDVGDKLLVAVTQRLLQPL 330

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                + R+GG+EF   A      +AA LA+ L + I++          + +T+S GIA 
Sbjct: 331 KGQYTLARIGGDEFVLLAETDGPDDAASLASALVRAIDS--PFALEPYELVVTLSIGIAL 388

Query: 227 RCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             H       +++ AD A+Y  K  GRN    F    N
Sbjct: 389 YPHDGKTDRELMFNADAAMYHTKHMGRNGYHFFQPSMN 426


>gi|254456813|ref|ZP_05070241.1| ggdef domain protein protein [Campylobacterales bacterium GD 1]
 gi|207085605|gb|EDZ62889.1| ggdef domain protein protein [Campylobacterales bacterium GD 1]
          Length = 720

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 8/176 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           ++       ++  ++ ID L+G +N   F       +     YN  LS +  DID+FK I
Sbjct: 545 IQSHQRENVKLEVMAFIDPLTGAVNRRKFEELSMQELERSNRYNSDLSFLMLDIDHFKSI 604

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD+++   +   + +  +   V R+GGEEF      ++   A I A   RK 
Sbjct: 605 NDTYGHAAGDEILKHFASICLDMARSLDIVARVGGEEFVVMLPETTIDGAYIFAERFRKE 664

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           I  S++ +     I  ++S GIA   + + +  I+ RAD+ALY AK+SGRN  + +
Sbjct: 665 IYTSEVTVDE-QIIKYSVSIGIAILDNDKDVKDILQRADKALYKAKESGRNCTIVY 719


>gi|77359897|ref|YP_339472.1| hypothetical protein PSHAa0951 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874808|emb|CAI86029.1| putative orphan protein; putative conserved domain
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 1002

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 112/242 (46%), Gaps = 19/242 (7%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS-------LLLGYI-SGSILKEL 93
            I I +I +       + G   I   N + + +S++IS        +  Y+ S   +  +
Sbjct: 500 AILIDDIDVDLRSRNCWRGDTLIESNNKAPIWVSLSISPIREDDGTITSYVASAQDISFV 559

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
             S  ++ QL+  D L+GL N + F       ++     +   ++ +FD+D FK+IND  
Sbjct: 560 KESQRKMEQLAYFDTLTGLANRTFFRMQLRKSMALAERGHYAFALFYFDLDEFKRINDTL 619

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIEN 205
           GH  GD+++  ++++L         + RLGG+EFA    G   QE A  +AN ++K + N
Sbjct: 620 GHNAGDQLLVEVANRLKQRLRAEDTIARLGGDEFAILLSGIEHQEHATQVANTIQKTL-N 678

Query: 206 SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             I + S   I I+ S GI    +  +    ++  AD A+Y AK  GRN    +S   N 
Sbjct: 679 EPIQLGSNEVI-ISASIGITMAPYDSQEEDQLLKHADLAMYEAKAKGRNTFHFYSQELNT 737

Query: 265 TC 266
             
Sbjct: 738 AA 739


>gi|330943926|gb|EGH46137.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 983

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 15/192 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + E   S +RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 532 SDISERRASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQAWVVLMFLDLDRFK 591

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-----L 195
            IND+ GH  GD+++  ++ +L+        V R+GG+EF         +EAA+     +
Sbjct: 592 PINDSLGHAAGDRMLQEMATRLLACVSVDDTVARMGGDEFTLLLEPDETREAALNRAIHV 651

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  +   +      +  G    +T S GIA      + +S ++  AD A+Y AK+ G+N 
Sbjct: 652 AERILTSL--ITPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKECGKNN 709

Query: 255 VVCFSDIENNTC 266
              +    N T 
Sbjct: 710 FQFYQADMNATA 721


>gi|171058109|ref|YP_001790458.1| diguanylate cyclase [Leptothrix cholodnii SP-6]
 gi|170775554|gb|ACB33693.1| diguanylate cyclase [Leptothrix cholodnii SP-6]
          Length = 381

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 105/205 (51%), Gaps = 13/205 (6%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           L + LV+  S+ +  + + + L      +   L     R+ QL+  D L+GL N     +
Sbjct: 176 LLWTLVKGASINLAGMALRMELNDSHERLAAALL----RVEQLAERDELTGLPNRRRMQA 231

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           +L    E+        S+   DID+FK+IND +GHP+GD V+  ++  +      P  VG
Sbjct: 232 ALAEERERCSRNGVSFSVAMLDIDHFKRINDLYGHPMGDAVLRSVAQLMRTALRKPDLVG 291

Query: 174 RLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232
           R+GGEEF     G++  +EA  +   +R  IE +  + ++   + +T S G+A     E 
Sbjct: 292 RVGGEEFLMILPGAARLEEAKHVVERVRAAIEGNDWS-ATRADLQVTASIGVAVGEPGES 350

Query: 233 ISTIIYRADQALYVAKKSGRNRVVC 257
           + ++  RAD+ LY+AK+ GRN+V  
Sbjct: 351 VESLFDRADRGLYLAKQGGRNQVAA 375


>gi|257481810|ref|ZP_05635851.1| diguanylate cyclase, putative [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|330986814|gb|EGH84917.1| diguanylate cyclase [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331009445|gb|EGH89501.1| diguanylate cyclase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 686

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 11/184 (5%)

Query: 82  LGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSI 131
           L     S+ +E            Q + ID L+GL N +A+   L     +       L +
Sbjct: 501 LSARVASMEQEALGFRTHLEEQRQKALIDPLTGLPNRAAWGERLEQEMTRWQHEKNSLLV 560

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK+IND +GH  GDKV+  +++       +  F+ R GGEEF      +    
Sbjct: 561 CILDLDHFKRINDGYGHLAGDKVLKIVANVFRKRLRSDDFLARFGGEEFVMLLPATPPGT 620

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              L ++LR  +E+   +   G  + IT+S G+      E   T I RADQALY AK++G
Sbjct: 621 GLTLLDELRAAVESCPFHFK-GERVTITVSIGVTAFRTAERSDTAIKRADQALYKAKENG 679

Query: 252 RNRV 255
           RNRV
Sbjct: 680 RNRV 683


>gi|209695436|ref|YP_002263365.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238]
 gi|208009388|emb|CAQ79662.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238]
          Length = 583

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 85/177 (48%), Gaps = 8/177 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
             ++ + +  D L+GL N   +  ++         + +++S++  D+D+FK+ NDN+GH 
Sbjct: 385 QEKLREQAISDPLTGLYNRRYYEETINQELMRSNRHKQEMSLLMLDLDHFKRFNDNYGHD 444

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  +   L+        + RLGGEE A     +S + A  +AN L + + +  + 
Sbjct: 445 AGDYVLKTIGSLLLSTMRGEDTICRLGGEELAIILPNTSAEAATKVANSLCQSVSDLHLA 504

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           I       +++S GI+    +      +   AD ALY AK  GR++   + D+  N 
Sbjct: 505 IKDLSLGKLSVSIGISTYPANGLQADDLTKLADIALYEAKGRGRDQSCHYDDLTQNA 561


>gi|190893470|ref|YP_001980012.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190698749|gb|ACE92834.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 384

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 112/239 (46%), Gaps = 19/239 (7%)

Query: 31  FSIFFSIFIAT-VIFIANIFLFYIGLT----PFYG---LEYILVENLSLVIISITISLLL 82
            ++   +++ T +IF A   L   G      PF G     ++ V  ++ +++     +L+
Sbjct: 151 AALLVGLYVCTAMIFAARSILAATGEIGGPDPFGGSVVHSWMAVSAVAFIMLRSMAMVLM 210

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-EKLSIVFFDIDYFKQ 141
                        S N++++L+  D L+G LN       L +   + +S++  DID+FKQ
Sbjct: 211 AA---------ERSRNQLTELAHHDPLTGALNRGGLAQHLPALGSQPVSLLIIDIDHFKQ 261

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD+V+   +     +      + R GG+EF A     S ++A  +A  +R 
Sbjct: 262 LNDRHGHAAGDEVLRLFASVSRSIMRPHDLLARQGGDEFLAVLKNLSREDAVAIAERIRL 321

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
               + +       +  T+S G+A R        ++++AD+ALY +K+ GRNRV  F +
Sbjct: 322 DFAAAVMQRPD-LGVFPTLSIGVATRESDGDFEGLMHKADEALYRSKREGRNRVEAFRE 379


>gi|113971888|ref|YP_735681.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113886572|gb|ABI40624.1| diguanylate cyclase [Shewanella sp. MR-4]
          Length = 625

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 93/183 (50%), Gaps = 11/183 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL     ++++ S ID L+G+ N SAF   L             ++++  DID FK I
Sbjct: 440 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLLAESRISRRQETPIALLMLDIDRFKSI 499

Query: 143 NDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD+ +  ++  L          V R GGEEFA     ++   A  +A ++R 
Sbjct: 500 NDQFGHLAGDQALKVIATTLQQHLKRPTDLVSRFGGEEFAIILPNTTADGALQVAENIRD 559

Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +  +    G  I +T+S G++     + +  + ++ +AD+ALY AK SGRN+V  ++
Sbjct: 560 AVTSIGLAW-EGKPIPLTVSIGVSADVISNDQHSTELLEQADKALYQAKNSGRNQVKLYA 618

Query: 260 DIE 262
             +
Sbjct: 619 PAQ 621


>gi|46580837|ref|YP_011645.1| sensory box protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450257|gb|AAS96905.1| sensory box/GGDEF domain/EAL domain protein [Desulfovibrio vulgaris
            str. Hildenborough]
 gi|311234538|gb|ADP87392.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Desulfovibrio vulgaris RCH1]
          Length = 1413

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 57/261 (21%), Positives = 109/261 (41%), Gaps = 20/261 (7%)

Query: 16   EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIIS 75
             + L S+       Y     S+++ T + +    +  + L  +   +     +  L+   
Sbjct: 889  RQLLLSYEDLLGRAYIGTIASVWLGTPLRVRGKVIGAMVLQHYSDPDAFSDSDARLM--- 945

Query: 76   ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NE 127
               + L   I+ +I  E   +  +++ L+  D L+GL N +  +  +             
Sbjct: 946  ---TSLADQIAVAI--ERKQNEEQLTYLALHDSLTGLPNRTLLLERIEQARLRSLRGKGR 1000

Query: 128  KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186
              +++  D+D FK IND+ GH VGD+++  +S  +  V      V RLGG+EFA      
Sbjct: 1001 SFAVMMIDLDRFKIINDSHGHAVGDRLLQMVSAAVRPVLRPADTVARLGGDEFAILLEDV 1060

Query: 187  SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245
            ++ +E   +A  + K +E  +    +   +  + S GI  R         ++  AD A+Y
Sbjct: 1061 ATPREVVHVARRVIKAVE--RPARVANKLLRTSASVGIVLRTDGYGSADELLRDADIAMY 1118

Query: 246  VAKKSGRNRVVCFSDIENNTC 266
             AK+ GR R   F+   +   
Sbjct: 1119 QAKEQGRGRFRVFNRTMHQQA 1139


>gi|158315645|ref|YP_001508153.1| serine/threonine protein kinase [Frankia sp. EAN1pec]
 gi|158111050|gb|ABW13247.1| serine/threonine protein kinase [Frankia sp. EAN1pec]
          Length = 1726

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 92/206 (44%), Gaps = 16/206 (7%)

Query: 66   VENLSLVIISITISLLLGYISGSILK-------ELFISYNRISQLSRIDCLSGLLNHSAF 118
            +E + L+   + +SL    +  S+ +       +L  +  R+ QLSR D L+GL N    
Sbjct: 1511 LEGIMLIAGQLAVSLDNALVYASLERKVAERTQQLAAANRRLEQLSRTDSLTGLANRRRL 1570

Query: 119  ISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
               L +           +++   DID+FK  ND+FGH  GD+ +  ++  L         
Sbjct: 1571 EEVLDAEWHRARLHSTPIALAMIDIDHFKLYNDHFGHTAGDRCLQRVAAGLAASLRPTHM 1630

Query: 172  VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCH 229
              R GGEEFA     +  + A  LA  LR+ +              +T+S G+A      
Sbjct: 1631 AARFGGEEFAVVMPDTGAETAVELARQLRRAVAGLAEPHPLVIHRIVTVSIGVAATIPDP 1690

Query: 230  KEPISTIIYRADQALYVAKKSGRNRV 255
             + ++  + RAD  LY AK+ GR+RV
Sbjct: 1691 GDEVAAFVERADIELYRAKRGGRDRV 1716


>gi|330961617|gb|EGH61877.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 1508

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 15/192 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + + E   S +RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 803 TDISERKASEDRIHRLAYFDALTHLPNRTLFQDRLYSALQQAERQQAWVGLMFLDLDRFK 862

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAIL 195
            IND+ GH  GD+++  ++ +L+        V R+GG+EF       S +E     A  +
Sbjct: 863 PINDSLGHAAGDRMLQEMATRLLACVDVNDTVARMGGDEFTLLLQQGSTREEALNRAIHV 922

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  +   +      +  G    +T S GIA      + +S ++  AD A+Y AK+ G+N 
Sbjct: 923 AERILTSL--VTPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKECGKNN 980

Query: 255 VVCFSDIENNTC 266
              +    N T 
Sbjct: 981 FQFYQADMNATA 992


>gi|325272685|ref|ZP_08139039.1| hypothetical protein G1E_07058 [Pseudomonas sp. TJI-51]
 gi|324102196|gb|EGB99688.1| hypothetical protein G1E_07058 [Pseudomonas sp. TJI-51]
          Length = 681

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 63/282 (22%), Positives = 120/282 (42%), Gaps = 25/282 (8%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFY----------IG 54
           L   +++W+      E    +   I  S+     I  + +       +           G
Sbjct: 143 LASGVALWIAFRLRGEGQYINRTRIGASLIMGCAIVGMHYTGMAAAQFPIGSVCGAVNAG 202

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSIL-KELFISYNRISQLSRIDCLSGLL 113
           +   + +  +++  L++  I++ +S+L   +  SIL   L ++ + + QL+  D L+ L 
Sbjct: 203 IDSNWLMVLVILITLAVCAIALIVSML--DVRTSILASSLDLANSELVQLALHDNLTRLP 260

Query: 114 NHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N       L              +++F D+D FK +ND +GH  GD+++  ++ ++    
Sbjct: 261 NRILLNDRLQQAIHKAIRQKSHFAVLFMDLDGFKAVNDTYGHHTGDQLLLQVAKRINDAK 320

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGIA 225
                V RLGG+EF         ++AA+LA  L   +EN ++    G  ++H++ S GIA
Sbjct: 321 RGEDTVARLGGDEFVLLIDPGEPEDAAMLAQRL---VENIRLPYVLGRQTVHVSASIGIA 377

Query: 226 ERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
                      ++  AD A+Y AK+ GR+    F    N   
Sbjct: 378 IFPENGLTEHELMVNADAAMYHAKEQGRDGYCFFEKAMNVNA 419


>gi|218893698|ref|YP_002442567.1| motility regulator [Pseudomonas aeruginosa LESB58]
 gi|218773926|emb|CAW29740.1| motility regulator [Pseudomonas aeruginosa LESB58]
          Length = 1415

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 15/192 (7%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            S + E   S  RI +L+  D L+ L N + F   L           + + ++F D+D FK
Sbjct: 962  SDISERKASERRIHRLAYYDALTHLPNRTLFQDRLHTALQQAERNGQWVVLMFLDLDRFK 1021

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAIL 195
             IND+ GH  GD+++  ++ +L         V R+GG+EF        ++E     A  +
Sbjct: 1022 PINDSLGHAAGDRMLQEVATRLSACVSQDDTVARMGGDEFTLLLPSQGDREIALKRAIQV 1081

Query: 196  ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            A  +   +   +     G    +T S G+A        +S ++  AD A+Y AK+ G+N 
Sbjct: 1082 AELILGRLA--RPFTLEGREFFVTASIGVALSPQDGAELSLLMKNADTAMYHAKEMGKNN 1139

Query: 255  VVCFSDIENNTC 266
               +    N   
Sbjct: 1140 FQFYQAEMNARA 1151


>gi|163849591|ref|YP_001637634.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163661196|gb|ABY28563.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 1428

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 20/211 (9%)

Query: 70  SLVIISITISLLL--------GYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           S V + I+ SL          GY++    + +     + +++++R D L+GL N   F  
Sbjct: 254 SFVWVEISFSLTREEETGGPNGYVAIIRDISQRKAVESEMARIARHDPLTGLPNRLHFRE 313

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L     +        +++  D+D FK +ND  GH  GD+++  ++ ++  V  T   + 
Sbjct: 314 QLEQEIARTKRTSSTFALLCLDLDRFKLVNDTLGHQAGDRLLKVVAQRIKSVLRTEDTLA 373

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE- 231
           RLGG+EF       +  ++A+ LA  +  I          G    + +S GIA       
Sbjct: 374 RLGGDEFVIIQTNCARAEDASRLAERV--IAAMLPPVDLGGYPAGVGVSIGIALAPQDSL 431

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
               +   ADQALY AK +GRN    F++ E
Sbjct: 432 DHDHLYALADQALYRAKAAGRNTFRLFAEEE 462



 Score =  159 bits (402), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 51/200 (25%), Positives = 76/200 (38%), Gaps = 41/200 (20%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF-------------- 134
             + E  +S  +  + +  D L+GL N   F   L       ++                 
Sbjct: 973  DITERKLSEEQAWRAANHDALTGLPNRRLFHQRLEQ-----ALAAAERGGTSVTLLLVDL 1027

Query: 135  ----DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-----L 185
                D      +ND  GH  GD V+  +S +LV        V RLGG+EFA        L
Sbjct: 1028 DTLRD------VNDIHGHDAGDAVLREVSSRLVEGLRASDTVARLGGDEFALLLTEPLRL 1081

Query: 186  GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
              + + A +L   LR+ +      +  G  +  T S G+A    H      ++  AD AL
Sbjct: 1082 EHAAKHAEVLLERLRQPL------VYRGHRLTCTASIGLAAYPDHHRNPYDLLKDADIAL 1135

Query: 245  YVAKKSGRNRVVCFSDIENN 264
            Y AK  GRN  V F+    +
Sbjct: 1136 YRAKAQGRNSAVVFAAEMRS 1155


>gi|88858416|ref|ZP_01133058.1| hypothetical protein PTD2_13539 [Pseudoalteromonas tunicata D2]
 gi|88820033|gb|EAR29846.1| hypothetical protein PTD2_13539 [Pseudoalteromonas tunicata D2]
          Length = 847

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 87/192 (45%), Gaps = 11/192 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVF 133
           LL     S + E   +  RI  L+  D L+ L N   F   L          N KL+++F
Sbjct: 385 LLYAAIFSDITERKKAEKRIISLAYFDELTHLPNRRLFSDRLEMALATAHRDNSKLAVMF 444

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEA 192
            D+D+FKQIND  GH VGD ++  ++++L         + RLGG+EF       S+ ++ 
Sbjct: 445 LDLDHFKQINDTMGHNVGDILLRQVAERLQACVREGDTLARLGGDEFTLLITEISDVEQL 504

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSG 251
            I A+ L   ++       +G  + IT S G A          +++  AD A+Y +K  G
Sbjct: 505 TIFAHKLIHQLQA--PFKLNGLDVSITTSIGAAVYPDDGIDSQSLLKHADVAMYRSKDLG 562

Query: 252 RNRVVCFSDIEN 263
           RN    +    N
Sbjct: 563 RNSFQLYKPAMN 574


>gi|257139582|ref|ZP_05587844.1| GGDEF domain-containing protein [Burkholderia thailandensis E264]
          Length = 466

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 107/234 (45%), Gaps = 22/234 (9%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI------LK 91
           ++A  IF A  F+        +G+   L+   S   +  +   L+  ++ S+      L+
Sbjct: 240 WLAHAIFAAGFFMLS------FGVVQALITTRSFATV-YSQQDLMARLAESMARTEGALQ 292

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           EL  +  ++  L+  D L+G  N   FI  + +   +        S++  D+D FK IND
Sbjct: 293 ELKRTNQKLEHLATTDPLTGASNRRKFIEQMQAEIARAKRDGTAFSLLALDLDNFKTIND 352

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH VGD V+     Q +        + R+GGEEF           A+ +A  +R  I 
Sbjct: 353 NYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRTTIA 412

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           N+   I  G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV 
Sbjct: 413 NASFGI-DGTHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 465


>gi|224588186|gb|ACN58810.1| GGDEF family protein [uncultured bacterium BLR9]
          Length = 765

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 11/175 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++ L++ D L+ L N       L           ++L+++F DID FK IND+ GH +G
Sbjct: 329 KMAHLAQHDFLTDLPNRRVLDDRLRQAISLARRQGKQLAVLFVDIDRFKHINDSLGHGMG 388

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINI 210
           DK +  ++++L         V R GG+EF       ++  +AAI+A  +   +     + 
Sbjct: 389 DKALQSMAERLTTCVRASDTVARQGGDEFVILLAEVTTADDAAIVAKKILSAVAL--PHR 446

Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
                + I+ S GI+   +  +   T+I  AD A+Y AK+ GRN    F    N 
Sbjct: 447 IGRHELQISASIGISTCPNDADDAETLIKHADIAMYQAKEKGRNNYQFFRADMNE 501


>gi|163783661|ref|ZP_02178649.1| Predicted signal transduction protein [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159881066|gb|EDP74582.1| Predicted signal transduction protein [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 869

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 8/170 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R++ ++  D L+G+ N       +         YN+ +S++  DID FK IND +GH VG
Sbjct: 449 RLTHMATTDPLTGVSNRRVLEHDIAKFGRLVKRYNKSMSLIMVDIDNFKGINDTYGHQVG 508

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++  +         V R GGEEFA     + +  A  LA  +R+ I  ++  I 
Sbjct: 509 DVVLKKVAKLIEESVRETDTVYRYGGEEFAVLCPETDKLGAYELAERIREKIRETKFWID 568

Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +   I+IT+S G+A      +    I+  AD +LY AK  G++R    +D
Sbjct: 569 TSRVIYITVSLGVASVPEDTDNPDEILAIADISLYRAKSEGKDRTAILTD 618


>gi|120601850|ref|YP_966250.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Desulfovibrio vulgaris DP4]
 gi|120562079|gb|ABM27823.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Desulfovibrio vulgaris DP4]
          Length = 1413

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 57/261 (21%), Positives = 109/261 (41%), Gaps = 20/261 (7%)

Query: 16   EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIIS 75
             + L S+       Y     S+++ T + +    +  + L  +   +     +  L+   
Sbjct: 889  RQLLLSYEDLLGRAYIGTIASVWLGTPLRVRGKVIGAMVLQHYSDPDAFSDSDARLM--- 945

Query: 76   ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NE 127
               + L   I+ +I  E   +  +++ L+  D L+GL N +  +  +             
Sbjct: 946  ---TSLADQIAVAI--ERKQNEEQLTYLALHDSLTGLPNRTLLLERIEQARLRSLRGKGR 1000

Query: 128  KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186
              +++  D+D FK IND+ GH VGD+++  +S  +  V      V RLGG+EFA      
Sbjct: 1001 SFAVMMIDLDRFKIINDSHGHAVGDRLLQMVSAAVRPVLRPADTVARLGGDEFAILLEDV 1060

Query: 187  SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245
            ++ +E   +A  + K +E  +    +   +  + S GI  R         ++  AD A+Y
Sbjct: 1061 ATPREVVHVARRVIKAVE--RPARVANKLLRTSASVGIVLRTDGYGSADELLRDADIAMY 1118

Query: 246  VAKKSGRNRVVCFSDIENNTC 266
             AK+ GR R   F+   +   
Sbjct: 1119 QAKEQGRGRFRVFNRTMHQQA 1139


>gi|28871248|ref|NP_793867.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28854498|gb|AAO57562.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 756

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/271 (25%), Positives = 118/271 (43%), Gaps = 41/271 (15%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN-------------LSLVIISI 76
           Y  +F  +F   V  +    L  + L     L  ++ EN             L L I +I
Sbjct: 178 YSGMFHQMFRYGVSLLLGAGLLTMHLMGMRALRLVIPENAELHIPGTENSQQLGLTIAAI 237

Query: 77  TISLLLGYISGS------------------ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           T+ ++ G IS +                  +L +L  +   + Q++  D L+ L+N   F
Sbjct: 238 TLLIIAGSISAAMADKKLQGKENDLQRVNALLTQLDQARVSLQQVAHYDPLTNLINRRGF 297

Query: 119 -----ISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                   L   + K  L+++F DID+FK+IND+ GH  GD+++  +++++         
Sbjct: 298 NQIFAEKLLEHTHSKGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDV 357

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           V R GG+EF         +EA  LA+ +   ++  +    +G  + +T S GIA      
Sbjct: 358 VARFGGDEFCILLSIPDYEEARHLAHRVMHKMK--EPIALAGRRMVMTTSIGIAVFPRDG 415

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                ++  AD ALY +K +GRNRV  FS  
Sbjct: 416 STCDELLKHADLALYQSKGNGRNRVNFFSPA 446


>gi|317046808|ref|YP_004114456.1| diguanylate cyclase [Pantoea sp. At-9b]
 gi|316948425|gb|ADU67900.1| diguanylate cyclase [Pantoea sp. At-9b]
          Length = 364

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 75/275 (27%), Positives = 128/275 (46%), Gaps = 22/275 (8%)

Query: 8   FLSIWLCH--EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYIL 65
           F ++W  H   K    F      +  S+    F++ +     +  F + +TP      +L
Sbjct: 80  FGALWAWHINHKYHLVFYFDGSFLIISLLSVFFVSAIALSDYLVAFCLHITPPVFTVLLL 139

Query: 66  VENLSLVIISITISL-LLGY------------ISGSILKELFISYNRISQLSRIDCLSGL 112
            +   L++I  TI+L L+G+             +  ++++L+      S LS +D L+GL
Sbjct: 140 DDGQHLMMILFTITLPLIGFSLHHLMRRRFDHFTRRLVRQLYEEKESFSDLSMLDPLTGL 199

Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +  E  +    ++  DID+FK  NDN+GH +GD+ +A +S  +     +
Sbjct: 200 YNRRGLKNRLDTVLENHAGSHFVLLLDIDHFKAYNDNYGHAMGDQALARVSVAIRDAVRS 259

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF       +   A  LA  +R+ + + +I       +  H+TISAGIA 
Sbjct: 260 RDVVTRYGGEEFLVLMTNVNASIAMKLAERIRQYVVDLEIPHRFNEKVSTHVTISAGIA- 318

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
               +     +  AD+ALYVAK  GRN ++ + D+
Sbjct: 319 PIFDDDFDQAVANADRALYVAKNQGRNTILAWEDL 353


>gi|74316170|ref|YP_313910.1| diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans
           ATCC 25259]
 gi|74055665|gb|AAZ96105.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 928

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 57/195 (29%), Positives = 91/195 (46%), Gaps = 15/195 (7%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDI 136
           +I   + +E   +  R+  L+  D L+GL N   F   L            + +++FFD+
Sbjct: 483 WIYEDVTRERQTA-ERLVYLAERDALTGLYNRHRFQQELARTMLDSDRQKMQCAVMFFDL 541

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK IND++GH  GD ++  ++ ++  +      + RLGG+EFA       + EA  LA
Sbjct: 542 DEFKTINDSYGHRAGDALLIRVAGEISALVRRNEVLARLGGDEFAILLPALQDNEAEALA 601

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
           + +   I         G S+ +T S GIA    H      ++ RAD A+Y AK +G+N  
Sbjct: 602 DRVVHAIAQIPFRF-EGQSLRVTTSVGIAYYPAHAVDADDLVARADIAMYQAKDAGKNTW 660

Query: 256 VCF-----SDIENNT 265
             F     +D E  T
Sbjct: 661 RVFRADSAADSEMRT 675


>gi|28869374|ref|NP_791993.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28852615|gb|AAO55688.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 730

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 101/213 (47%), Gaps = 19/213 (8%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G   +L  ++  + ++ T  LL+   +   + +L  +  +I  L+  D L+GL N +  +
Sbjct: 246 GAPLVLDVSVEFITLNNTACLLM---NARDIGQLKSAQAQIQHLAYHDPLTGLPNRALLM 302

Query: 120 SSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L          N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         V
Sbjct: 303 DRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSVIAARLEASVRQEDTV 362

Query: 173 GRLGGEEFAAAALGSS------EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
            RLGG+EF     G          +  +LA++LR ++         G  + +T S GI  
Sbjct: 363 ARLGGDEFVVLICGLDGSLEHVTHQVRVLADNLRVLLAEPMF--LDGHRLQVTPSVGIVL 420

Query: 227 RCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
                   + ++ RAD ALY AK SGRN    F
Sbjct: 421 IPDDGLTPADLLKRADIALYRAKDSGRNASQFF 453


>gi|53718944|ref|YP_107930.1| hypothetical protein BPSL1306 [Burkholderia pseudomallei K96243]
 gi|52209358|emb|CAH35303.1| putative membrane protein [Burkholderia pseudomallei K96243]
          Length = 454

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 10/228 (4%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           ++A  +F    F+   G+              S   +   ++  +    G +L+EL  + 
Sbjct: 228 WLAHAVFAGGFFMLSFGVVQALMTTRSFATVYSQQDLMARLAESMARTEG-VLQELKRTN 286

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
            ++  L+  D L+G  N   FI  + S   +        S++  D+D FK INDN+GH V
Sbjct: 287 QKLEHLATTDPLTGASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFKTINDNYGHQV 346

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+     Q +        + R+GGEEF           A+ +A  +R  I N+   I
Sbjct: 347 GDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRTTIANASFGI 406

Query: 211 SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV 
Sbjct: 407 -DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 453


>gi|119944956|ref|YP_942636.1| diguanylate cyclase with PAS/PAC sensor [Psychromonas ingrahamii
           37]
 gi|119863560|gb|ABM03037.1| diguanylate cyclase with PAS/PAC sensor [Psychromonas ingrahamii
           37]
          Length = 307

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 62/196 (31%), Positives = 98/196 (50%), Gaps = 10/196 (5%)

Query: 74  ISITISLLLGYISGS--ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------S 124
           +++ +   L  I+    I ++L  +  ++  L+  D L+ LLN  A+             
Sbjct: 106 LAVGVMAALTDITKQKKIERQLAEANKQLKLLADHDSLTNLLNARAYYEVCERMMSIALR 165

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           +N+  S++F D+D+FK+IND  GH VGD ++  +S  ++        +GR+GGEEF+   
Sbjct: 166 HNKPFSVLFVDLDHFKKINDTHGHHVGDLLLKAVSACILETCRDSDLIGRVGGEEFSLFL 225

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQA 243
             +    A I A  LR  IE     + +  +I IT S G+A    H + I  I   AD A
Sbjct: 226 PETGMSGAMIFAEKLRSNIEQLLHPVGTDKNIGITASIGVASKLIHHKAIVDIQRDADHA 285

Query: 244 LYVAKKSGRNRVVCFS 259
           +Y AK  GRN+V C S
Sbjct: 286 MYHAKHKGRNQVSCLS 301


>gi|15599797|ref|NP_253291.1| motility regulator [Pseudomonas aeruginosa PAO1]
 gi|107099735|ref|ZP_01363653.1| hypothetical protein PaerPA_01000753 [Pseudomonas aeruginosa PACS2]
 gi|254238656|ref|ZP_04931979.1| motility regulator [Pseudomonas aeruginosa C3719]
 gi|9950851|gb|AAG07989.1|AE004874_2 motility regulator [Pseudomonas aeruginosa PAO1]
 gi|126170587|gb|EAZ56098.1| motility regulator [Pseudomonas aeruginosa C3719]
          Length = 1415

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 15/192 (7%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            S + E   S  RI +L+  D L+ L N + F   L           + + ++F D+D FK
Sbjct: 962  SDISERKASERRIHRLAYYDALTHLPNRTLFQDRLHTALQQAERNGQWVVLMFLDLDRFK 1021

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAIL 195
             IND+ GH  GD+++  ++ +L         V R+GG+EF        ++E     A  +
Sbjct: 1022 PINDSLGHAAGDRMLQEVATRLSACVSQDDTVARMGGDEFTLLLPSQGDREIALKRAIQV 1081

Query: 196  ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            A  +   +   +     G    +T S G+A        +S ++  AD A+Y AK+ G+N 
Sbjct: 1082 AELILGRLA--RPFTLEGREFFVTASIGVALSPQDGAELSLLMKNADTAMYHAKEMGKNN 1139

Query: 255  VVCFSDIENNTC 266
               +    N   
Sbjct: 1140 FQFYQAEMNARA 1151


>gi|89092207|ref|ZP_01165161.1| probable two-component response regulator [Oceanospirillum sp.
           MED92]
 gi|89083295|gb|EAR62513.1| probable two-component response regulator [Oceanospirillum sp.
           MED92]
          Length = 505

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 55/181 (30%), Positives = 84/181 (46%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
            IL +L  S +++++ +R+D L+ + N   F                 L+++  DID+FK
Sbjct: 320 QILMQLKQSQDQLARSARVDGLTQVNNRREFERNIEMEWRRAQRSKRSLALIMLDIDHFK 379

Query: 141 QINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GH  GD  +  ++  +   +      V R GGEEF      +    A ++A  +
Sbjct: 380 PFNDGYGHLAGDGCLRTVAQTIKHSIQRAQDMVCRYGGEEFVVILPETDLDGAQMIAERI 439

Query: 200 RKIIENSQINIS-SGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           RK I   +IN   S     ITISAG+A      +     +I  ADQ LY AK  GRN+V 
Sbjct: 440 RKAIAKLKINHEFSSTDNTITISAGVACLSPSQEGSPHELILLADQGLYQAKAQGRNQVA 499

Query: 257 C 257
            
Sbjct: 500 I 500


>gi|254244505|ref|ZP_04937827.1| motility regulator [Pseudomonas aeruginosa 2192]
 gi|126197883|gb|EAZ61946.1| motility regulator [Pseudomonas aeruginosa 2192]
          Length = 1415

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 15/192 (7%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            S + E   S  RI +L+  D L+ L N + F   L           + + ++F D+D FK
Sbjct: 962  SDISERKASERRIHRLAYYDALTHLPNRTLFQDRLHTALQQAERNGQWVVLMFLDLDRFK 1021

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAIL 195
             IND+ GH  GD+++  ++ +L         V R+GG+EF        ++E     A  +
Sbjct: 1022 PINDSLGHAAGDRMLQEVATRLSACVSQDDTVARMGGDEFTLLLPSQGDREIALKRAIQV 1081

Query: 196  ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            A  +   +   +     G    +T S G+A        +S ++  AD A+Y AK+ G+N 
Sbjct: 1082 AELILGRLA--RPFTLEGREFFVTASIGVALSPQDGAELSLLMKNADTAMYHAKEMGKNN 1139

Query: 255  VVCFSDIENNTC 266
               +    N   
Sbjct: 1140 FQFYQAEMNARA 1151


>gi|95930998|ref|ZP_01313727.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
 gi|95133007|gb|EAT14677.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
          Length = 301

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 95/181 (52%), Gaps = 9/181 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
           Y+S   + E+     ++ ++++ D L+G+ N +   S L         +   LS++  D+
Sbjct: 118 YLSVQDVSEVVSYQKKLVRMNQTDPLTGVYNRNFMESQLEKEVVRCQRFKHNLSLLMIDV 177

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK +NDN+GH  GD  +  ++ ++        F+ R GG+EF      ++  +A  +A
Sbjct: 178 DLFKNVNDNYGHQCGDFALKEITQRISAKIRQTDFLIRYGGDEFCCLLTETAPDKAIKVA 237

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             LR+ I NS        + ++TIS G+A     +  + +++ +AD ALY+AK+SGRN V
Sbjct: 238 ELLRQQICNSPFQFKD-ITFNVTISIGVAGFDETDIDVESLLRKADSALYMAKQSGRNTV 296

Query: 256 V 256
           +
Sbjct: 297 I 297


>gi|326391753|ref|ZP_08213275.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Thermoanaerobacter ethanolicus JW 200]
 gi|325992217|gb|EGD50687.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Thermoanaerobacter ethanolicus JW 200]
          Length = 676

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 76/175 (43%), Gaps = 11/175 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
             + E       +   S  D L+   N   F       I  +       S++ FD+D+FK
Sbjct: 496 RDISERKRLEELLYHQSITDPLTNTYNRRFFMQMLEQEIERVKRNRRPFSLIMFDLDHFK 555

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND FGH  GD V+  ++D +           R GGEEF      +S   A  LA +LR
Sbjct: 556 KVNDRFGHAAGDMVLKSVADTVKERIRKTDCFARWGGEEFIILLPETSLNNAVDLAEELR 615

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           K I   ++         +T S G+ E    + I T++ R D  LY AK +GRN V
Sbjct: 616 KQISRMELQGIGD----VTASFGVTEYRDTDTIDTVLIRVDNMLYEAKGAGRNCV 666


>gi|297539269|ref|YP_003675038.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera sp. 301]
 gi|297258616|gb|ADI30461.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera sp. 301]
          Length = 846

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 81/192 (42%), Gaps = 11/192 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
            ++ + + E   +   I   +  D L+ L N   F   L           +K ++   DI
Sbjct: 391 LVTFTDITERKKAEQTIEFQANYDALTQLPNRRYFNIRLEHEVKSAVLNGKKFALALLDI 450

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FK++ND  GH  GD+++  ++ +L+        V RLGG+EF            A ++
Sbjct: 451 DNFKEVNDTLGHSAGDELLKQVAQRLINSVRDIDTVSRLGGDEFTIIISNLKDNNTAEVV 510

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNR 254
           A  L K +  S+        I +T+S G+        +   ++  +DQA+Y AK  GRNR
Sbjct: 511 AQKLLKAL--SEPFKLEENKIFLTVSIGLTIYPDDTNLSEDMLKNSDQAMYQAKLQGRNR 568

Query: 255 VVCFSDIENNTC 266
              F+       
Sbjct: 569 HSYFTSDMQVAA 580


>gi|257094976|ref|YP_003168617.1| PAS/PAC and GAF sensor-containing diguanylate
            cyclase/phosphodiesterase [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
 gi|257047500|gb|ACV36688.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Candidatus Accumulibacter phosphatis clade IIA str.
            UW-1]
          Length = 1399

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 11/187 (5%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQ 141
             + +   +   I +L+  D L+GL N S                 E L+++F D+D FK 
Sbjct: 959  DITQHKEAEASIQRLAHFDALTGLPNRSLLEERVRHDLARAHRGREALALMFVDLDRFKN 1018

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            +ND+ GH VGD ++  ++++L         V RLGG+EF      +    AA +A  L +
Sbjct: 1019 VNDSLGHRVGDALLIQVAERLRRAVRDEDTVSRLGGDEFIVVLPSTDADGAAHVAAKLLE 1078

Query: 202  IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS- 259
            ++            +  ++SAGIA      E    +   AD A+Y AK+SGRN    F+ 
Sbjct: 1079 VMA--PAYRIEQHELTCSLSAGIAMYPADGESFEALSMSADTAMYRAKQSGRNAYCFFTA 1136

Query: 260  DIENNTC 266
            +++  + 
Sbjct: 1137 EMQERSA 1143


>gi|15888624|ref|NP_354305.1| response regulator PleD [Agrobacterium tumefaciens str. C58]
 gi|15156350|gb|AAK87090.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 456

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 60/191 (31%), Positives = 90/191 (47%), Gaps = 14/191 (7%)

Query: 81  LLGYISGSILKELFISYNRIS-----QLSRIDCLSGLLNHSAFISSL-------GSYNEK 128
           L+      I ++ +  + R++     +L+ +D L+GL N     S L             
Sbjct: 263 LVARSLTQIRRKRYNEHLRLNLQHTMELAIVDGLTGLNNRRYLDSHLKILFDRAAVRGRP 322

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +SI   DID FK +ND +GH VGD+V+   + ++           R GGEEF      + 
Sbjct: 323 ISICMTDIDRFKLVNDTYGHDVGDEVLREFAARIRSTVRGADLACRYGGEEFVVVMPDTP 382

Query: 189 EQEAAILANDLRKIIENSQINISS-GPSIHITISAGIAERCHK-EPISTIIYRADQALYV 246
            + AA +A  LR I+E+    + S    + IT S GIA           I+ +AD+ALY 
Sbjct: 383 IELAASVAERLRAIVEDKPFYVRSIDRELSITASLGIATSSGAFGAPDEILKQADKALYE 442

Query: 247 AKKSGRNRVVC 257
           AK +GRNRVV 
Sbjct: 443 AKHAGRNRVVA 453


>gi|300717917|ref|YP_003742720.1| diguanylate cyclase [Erwinia billingiae Eb661]
 gi|299063753|emb|CAX60873.1| Putative diguanylate cyclase [Erwinia billingiae Eb661]
          Length = 535

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/249 (26%), Positives = 112/249 (44%), Gaps = 16/249 (6%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL 80
           +  P   ++   +  S+  A +  I    L  +   P + L     +  +  +      +
Sbjct: 275 TLEPLNSLLMKVLQHSVPFALLTLICAWILARLIALPLWQLARKASQMDAPGVSKEINGI 334

Query: 81  LLGYISGSILKELFIS-----YNRISQL---SRIDCLSGLLNHSAFISSLG---SYNEKL 129
              Y   S +K   ++      ++I +L    + D ++ LLN     + L    +  +  
Sbjct: 335 RSWYYESSQIKRAMLAGIGLLQDKIGRLKFEVQTDPMTELLNRRGLNAVLEYFLATRQPF 394

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID+FK++ND +GH VGD VI  ++DQL         V R GGEEF     G+  
Sbjct: 395 AVLAVDIDHFKRVNDTWGHDVGDNVIKSVADQLGNSSRQTDVVCRNGGEEFLMIMPGADR 454

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAK 248
             A  +A  +R+ IE  ++        HI+IS G+A     E  +  +  +AD ALY AK
Sbjct: 455 DVAMAIAERVRRKIEQLELPTVG----HISISIGVAFWSPDEISMERVFKQADDALYQAK 510

Query: 249 KSGRNRVVC 257
            +GRNRV+ 
Sbjct: 511 NAGRNRVIA 519


>gi|285017083|ref|YP_003374794.1| hypothetical protein XALc_0263 [Xanthomonas albilineans GPE PC73]
 gi|283472301|emb|CBA14807.1| hypothetical protein XALc_0263 [Xanthomonas albilineans]
          Length = 595

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 9/193 (4%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GS 124
           V+  + +  ++       L  L + + R+   S  D L+GL N      SL         
Sbjct: 387 VLERLNLVEVVAEQLAMALHNLHLRH-RLRTQSIRDPLTGLYNRRYLEESLLRELSRCAR 445

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
            +  L+++  D+D+FK +ND FGH  GD ++A     L  +        R GGEEF    
Sbjct: 446 RDLPLALMMLDLDHFKALNDRFGHAGGDALLAAFGQLLGGLVRPEDIACRYGGEEFTVIL 505

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQA 243
            G++   A   A  +R  +E  Q+         IT+S G+A    H      ++  AD A
Sbjct: 506 PGAAADVAQRRAEQIRAAVEQMQVQHHGQMLPSITVSIGVAAYPEHGSTGEELLRCADAA 565

Query: 244 LYVAKKSGRNRVV 256
           LY  K+SGRNRV 
Sbjct: 566 LYCGKRSGRNRVA 578


>gi|254459339|ref|ZP_05072760.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207083952|gb|EDZ61243.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 565

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 86/298 (28%), Positives = 130/298 (43%), Gaps = 43/298 (14%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIY--FSIFFSI--------------------F 38
           M R  K + S++L     +    P++ +++  FS  F I                    F
Sbjct: 264 MDRVFKIYASVFLVFALLISLSVPYSSLLFNIFSALFFILLLFTTITVWSRGFRCARYYF 323

Query: 39  IATVIFIANIFLFYIGLTPFYG----LEYILVENLSLVIISITISLLLGYI--------S 86
           +A  IF   + L  +             Y  +    + II  T+ L   Y+         
Sbjct: 324 LALTIFAPTMLLMTLTFNTILDNTDITRYSFLAGAFIEIIFFTLLLTNRYLDTYSANKCL 383

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139
               KEL     +++  ++ D LSGL N   F             Y E LSI+  D+D F
Sbjct: 384 TMQTKELQEIKAQLTIEAKTDLLSGLHNRRYFSEMSQKSFLQAKRYEENLSIILLDLDKF 443

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND +GH  GD VI   +D L  +      V R GGEEF      ++  EA ++A ++
Sbjct: 444 KKINDTYGHQTGDIVIKVTADILKYLNREDDIVARYGGEEFIILLPHTNLYEALVIAENI 503

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRV 255
           RK IE+++I+  S    H+T S G+A+    + E IS  I R D A+Y AK+ GRN+V
Sbjct: 504 RKKIESTEIHSESDDIFHVTASIGVAQLDTINDENISKTIQRCDNAMYKAKQRGRNKV 561


>gi|330966507|gb|EGH66767.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 763

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/271 (25%), Positives = 118/271 (43%), Gaps = 41/271 (15%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN-------------LSLVIISI 76
           Y  +F  +F   V  +    L  + L     L  ++ EN             L L I +I
Sbjct: 185 YAGMFHQMFRYGVSLLLGAGLLTMHLMGMRALRLVIPENAELHIPGTENSQQLGLTIAAI 244

Query: 77  TISLLLGYISGS------------------ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           T+ ++ G IS +                  +L +L  +   + Q++  D L+ L+N   F
Sbjct: 245 TLLIIAGSISAAMADKKLQGKEHDLQRVNTLLSQLDQARVSLQQVAHYDPLTNLINRRGF 304

Query: 119 -----ISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                   L   + K  L+++F DID+FK+IND+ GH  GD+++  +++++         
Sbjct: 305 NQIFAEKLLEHTHSKGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDV 364

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           V R GG+EF         +EA  LA+ +   ++ +     +G  + +T S GIA      
Sbjct: 365 VARFGGDEFCILLSIPDYEEARHLAHRVMDKMKETI--ALAGRRMVMTTSIGIAVFPRDG 422

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                ++  AD ALY +K +GRNRV  FS  
Sbjct: 423 STCDELLKHADLALYQSKGNGRNRVNFFSPA 453


>gi|320353862|ref|YP_004195201.1| PAS/PAC sensor-containing diguanylate cyclase and hemerythrin-like
           metal-binding domain-containing protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320122364|gb|ADW17910.1| diguanylate cyclase with PAS/PAC sensor and hemerythrin-like
           metal-binding domain protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 817

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 9/176 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
             + E       + +L+  D L+G  N           +     + + LS +  DID+FK
Sbjct: 471 RDISERKRMEAELRRLATTDPLTGAYNRRFLYEKATQELERSRRFKQPLSFLLVDIDWFK 530

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND  GH +GD+V+  +S   + +  +     RLGGEEF    + +  +   + A  LR
Sbjct: 531 RINDAHGHDIGDEVLKTMSRACMGLLRSIDLFSRLGGEEFGILLVNTGREGGHVFAERLR 590

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             +E  ++    GP I  T+S G+A        ++ +I +AD ALYVAK +GRNRV
Sbjct: 591 HHLEQLEVACPGGP-IRFTVSIGLAVSDDTVGTVNDLIKQADLALYVAKANGRNRV 645


>gi|71909600|ref|YP_287187.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Dechloromonas aromatica RCB]
 gi|71849221|gb|AAZ48717.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Dechloromonas aromatica RCB]
          Length = 1665

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 56/211 (26%), Positives = 91/211 (43%), Gaps = 13/211 (6%)

Query: 64   ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
            I VE L++  +      L  +++  S +  L     R+  L+  D L+ L N       +
Sbjct: 1060 IFVEQLTISSVRNRDGALSNFVAIFSDITLLKQHQQRLEHLAHFDALTQLPNRMLLSDRM 1119

Query: 123  -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                       + L++ + D+D FK IND +GH VGD ++  ++ +L         V RL
Sbjct: 1120 QLAKAQAERSGKTLAVCYLDLDNFKPINDRYGHSVGDFLLIEVAQRLKTCVRAGDTVARL 1179

Query: 176  GGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPI 233
            GG+EF           E       +   +  SQ    S   + ++ S G+    H     
Sbjct: 1180 GGDEFVLLITNLDDLNECDHAMTRVISAL--SQPFRVSAQFVTVSASIGVTLYPHDGSDS 1237

Query: 234  STIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             T++  ADQ++Y AK+ GRNR   F D EN+
Sbjct: 1238 DTLLRHADQSMYAAKQEGRNRYHLF-DPEND 1267


>gi|114045907|ref|YP_736457.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113887349|gb|ABI41400.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 625

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 93/183 (50%), Gaps = 11/183 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL     ++++ S ID L+G+ N SAF   L             ++++  DID FK I
Sbjct: 440 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLLAESRISRRQETPIALLMLDIDRFKSI 499

Query: 143 NDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD+ +  ++  L          V R GGEEFA     ++   A  +A ++R 
Sbjct: 500 NDQFGHLAGDQALKVIATTLQQHLKRPTDLVSRFGGEEFAIILPNTTADGALQVAENIRD 559

Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +  +    G  I +T+S G++     + +  + ++ +AD+ALY AK SGRN+V  ++
Sbjct: 560 AVTSIGLAW-EGKPIPLTVSIGVSADVISNDQHSTELLEQADKALYQAKNSGRNQVKLYA 618

Query: 260 DIE 262
             +
Sbjct: 619 PAQ 621


>gi|330811842|ref|YP_004356304.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
            subsp. brassicacearum NFM421]
 gi|327379950|gb|AEA71300.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas
            brassicacearum subsp. brassicacearum NFM421]
          Length = 1282

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 15/192 (7%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            S + E   S  RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 831  SDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQSADRQKTWVVLMFLDLDRFK 890

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAIL 195
             IND+ GH  GD+++  ++ +L+        V R+GG+EF       + +E     A  +
Sbjct: 891  PINDSLGHAAGDRMLKEMATRLLGCVADDDTVARMGGDEFTLLLQPRASREMALNRAINV 950

Query: 196  ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            A  +   +   +  +  G    +T S GIA        +S ++  AD A+Y AK+ G+N 
Sbjct: 951  AEQILASL--VRPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKERGKNN 1008

Query: 255  VVCFSDIENNTC 266
               +    N + 
Sbjct: 1009 FQFYQADMNASA 1020


>gi|312885207|ref|ZP_07744886.1| sensory box/GGDEF family protein [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367147|gb|EFP94720.1| sensory box/GGDEF family protein [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 580

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 86/181 (47%), Gaps = 11/181 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           + K+L  +   + +LS ID L+ + N   F   L             L ++  D+DYFK 
Sbjct: 397 VEKQLEAANEELEKLSFIDGLTQICNRRRFDERLETLWFLHIREQSPLCVMLCDVDYFKG 456

Query: 142 INDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND +GH +GD+ +  ++D    V   +   V R GGEEFA     ++ + A  +A  + 
Sbjct: 457 YNDEYGHQMGDEALIKVADIFKSVINRSSDCVARYGGEEFAFILPNTNTEGALQVAERIH 516

Query: 201 KIIENSQI-NISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             I    I + +S  S  +T+S G+A     +      ++ RAD ALY AK +GRNR   
Sbjct: 517 SEIGKLSIAHKTSSVSDRLTVSIGLACFVPAYGTSSEKLVSRADIALYKAKANGRNRTHA 576

Query: 258 F 258
           +
Sbjct: 577 Y 577


>gi|189425690|ref|YP_001952867.1| diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ]
 gi|189421949|gb|ACD96347.1| diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ]
          Length = 768

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 12/215 (5%)

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCL 109
           L Y  +T     +++L + + +     ++  L G I    + EL     +I  L+  D L
Sbjct: 395 LEYRIMTADNKEKWVLEQGVPVFDTEGSVQALEGIIV--DISELKQIEAQIQHLASYDNL 452

Query: 110 SGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           + L N + F   +          + KL++ F D+D FK IND  GH  GD ++   + ++
Sbjct: 453 TSLPNRALFSDRIDRALLSAQRNSSKLALFFIDLDQFKPINDELGHDTGDWLLQAAAQRM 512

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                    V R+GG+EFA       + Q+A  +A  +R  + N      SG ++HI+ S
Sbjct: 513 AESVRESDTVARIGGDEFAVLLQNIATAQDARTVAEKIRTTL-NRPFITPSGVTLHISCS 571

Query: 222 AGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
            G+A      +    ++  AD+A+Y AKK GRN V
Sbjct: 572 IGVALYPEDGDNQRDLLRAADEAMYRAKKRGRNAV 606


>gi|313202429|ref|YP_004041087.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688]
 gi|312441745|gb|ADQ85851.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688]
          Length = 771

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 112/241 (46%), Gaps = 13/241 (5%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
            +A +I I+ I+   +  T        L   LS++ +++    +L   S  +L    +  
Sbjct: 265 LMAMLIAISTIYFMMMDTTTPIAKSIALGSCLSIIALAMVRQSILLAESERLLTAEQLIE 324

Query: 98  N---RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
               R   L+  D L+GL N   F   L          N ++ ++F DID+FK IND+ G
Sbjct: 325 EGQMRYQHLAHHDILTGLPNRLLFQDRLTHALALSARNNNRVGMLFIDIDHFKNINDSLG 384

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206
           H +GD+++  + ++L +         RLGG+EF        +  EAA +A++L + +  +
Sbjct: 385 HVIGDELLVAIVERLKLRIREQDTFARLGGDEFVLLIEQLQNASEAATIASNLLEAL-KT 443

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             ++S    + I+ S GI+      +  + +I  AD A+Y AK +GRNR   +++     
Sbjct: 444 PFHLSGNCEVVISASIGISVCPEDTQDATQLIRNADSAMYRAKDTGRNRYQFYTEELTQR 503

Query: 266 C 266
            
Sbjct: 504 A 504


>gi|332528841|ref|ZP_08404815.1| sensory box/GGDEF family protein [Hylemonella gracilis ATCC 19624]
 gi|332041700|gb|EGI78052.1| sensory box/GGDEF family protein [Hylemonella gracilis ATCC 19624]
          Length = 779

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            + +        ++  L+  D L+GL N S         I+    ++ K++++F D+D+F
Sbjct: 324 AADVTARKQVERQVEFLAYRDVLTGLPNRSLLQDRFAQAIARAERHHRKVALLFLDLDHF 383

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND+ GH  GD ++  ++ +L         + R GG+EF      S  +   ++   L
Sbjct: 384 KTINDSLGHATGDALLKEVARRLSDGMRESDTISRQGGDEFLVVL--SDLEGTEMITPVL 441

Query: 200 RKIIENSQIN-ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            KI E  Q   +  G  + I+ S G+A          T++ +AD ALY AK +GRN+   
Sbjct: 442 LKIRERLQQPLLFDGHELSISSSIGVALYPDDGLDFETLLKKADTALYRAKDAGRNQARF 501

Query: 258 FSDIENNTC 266
           F +  N   
Sbjct: 502 FDEQMNTEA 510


>gi|317154386|ref|YP_004122434.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
 gi|316944637|gb|ADU63688.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
          Length = 840

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 18/216 (8%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L P  G+ YI     + +  S  ++ ++G      + E  ++   + +L+  D L+GL +
Sbjct: 623 LLPEGGVRYIRAAARAHMDNSSKVASIIGI--NQDITEQRLAEQELVRLATKDSLTGLFS 680

Query: 115 HSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
              F+            Y E LS+V FD D FK +ND  GH VGD V+  +         
Sbjct: 681 RGHFMELGTRAVEHARRYGEPLSVVMFDADRFKAVNDTHGHDVGDMVLKAIGRAAARTLR 740

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
               +GR+GGEEFAA    ++ ++A ++A  +R  I  S+I + +   + +T+S G+   
Sbjct: 741 DVDVLGRIGGEEFAAVLPQTTREQALLVAERVRAEIAASRIEVDADTVLSVTVSLGVCVM 800

Query: 228 C---------HKEPISTIIYRADQALYVAKKSGRNR 254
                         +  ++  AD ALY AK++GRNR
Sbjct: 801 DTAPDTDPGTATASLDKLLKGADTALYKAKQNGRNR 836


>gi|226953371|ref|ZP_03823835.1| GGDEF domain-containing protein [Acinetobacter sp. ATCC 27244]
 gi|294651925|ref|ZP_06729214.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|226835909|gb|EEH68292.1| GGDEF domain-containing protein [Acinetobacter sp. ATCC 27244]
 gi|292822157|gb|EFF81071.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 397

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 75/283 (26%), Positives = 123/283 (43%), Gaps = 27/283 (9%)

Query: 6   KDFLSIWLCHEKNL-ESFSPHTFMIY-------FSIFFSIFIATVIFIANIFLFYIGLTP 57
               +  LCH   L  SFSP T ++Y         +F    I   +  A I L +  +  
Sbjct: 112 VQLFTALLCHTSYLIGSFSPATMVVYVSVVAVGLVLFNRKMIYCALIPATIALLFCNILS 171

Query: 58  FYG-LEYILVEN--------------LSLVIISITISLLLGYISGSILKELFISYNRISQ 102
            YG L+Y  + N               S++   + I +   ++   +L +       I  
Sbjct: 172 LYGVLQYAPLFNPKILNQAEMHPFWVGSMLFFLLPILIACLFLFEILLTQWRTRETAIQA 231

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           LSR+D L+ ++N  +  + L   N++     S+V  D+D+FK IND FGH +GD+V+  +
Sbjct: 232 LSRLDPLTNVMNRRSISNHLEKLNKQPNSFYSVVLLDLDHFKNINDEFGHSMGDQVLVHV 291

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         +GR GGEEF      ++  +A  +A   R  I +            +
Sbjct: 292 AKCLSNNVRDQDLIGRFGGEEFILLLPNTTAIQAKNVAERCRLAIADMCFIAEDQQQFSV 351

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           + S GI+   +      ++ +ADQALY  K SGRN +  F D+
Sbjct: 352 SASFGISSSLNANEPHLVVSQADQALYAVKASGRNNIQIFGDL 394


>gi|218248505|ref|YP_002373876.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8801]
 gi|218168983|gb|ACK67720.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8801]
          Length = 660

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 98/203 (48%), Gaps = 18/203 (8%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------S 124
           ++ S+   L +      +L++L  +  +++ L+ +D L+ + N   F   L         
Sbjct: 457 LLESVAAQLGIAIAHSHLLEQLKEANEKLAALANLDGLTQVANRRHFDEILAQRWKQCAR 516

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAA 183
             + LS++  D+DYFK+ ND +GH +GD+ +  ++  +   V      V R GGEEFA  
Sbjct: 517 EKQPLSLIMCDVDYFKRYNDFYGHQMGDECLIKVAQTIAKTVQRPGDLVARWGGEEFAVI 576

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIA---------ERCHKEPI 233
              +       +A  +R+ +++  I     P    ++IS GIA         E  H+  I
Sbjct: 577 LPNTDVNGVKYIAQSIREQVQSLAIIHEDSPIKNQVSISLGIATIIPPAKTLENNHESLI 636

Query: 234 STIIYRADQALYVAKKSGRNRVV 256
             +I +ADQALY AK+ GR+R+ 
Sbjct: 637 KALIAQADQALYQAKEQGRDRIA 659


>gi|150018143|ref|YP_001310397.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052]
 gi|149904608|gb|ABR35441.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052]
          Length = 568

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 71/255 (27%), Positives = 119/255 (46%), Gaps = 22/255 (8%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN----LSLVIISITISLLL 82
            +I    +F   + ++ ++  IF+ + G   +    Y L+E      S    + +I  LL
Sbjct: 320 ILISIYSYFKFGMGSIYYLVGIFILFTGFIIYILGSYGLLEWNIFAFSTCYPAASIETLL 379

Query: 83  GYISGSILKELFISYN---RISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIV 132
             I   I+K++        ++      D L+ + N   F          L      +S++
Sbjct: 380 FTIG--IIKQIKHEKEVNTKLQLEVITDKLTNIYNRRYFEETVVNKILQLEKEKSLVSML 437

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK++ND +GH  GD V++  +  +         + R GGEEF A    +  +E+
Sbjct: 438 VLDIDHFKKVNDTYGHSTGDLVLSETAMIIKQCLRKEDILVRWGGEEFVAVLPFTDSKES 497

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            I+A  +R  IEN +    +     IT+S GIAE+   E   +   RAD ALY AK++GR
Sbjct: 498 TIIAETIRLSIENHKFKFVN----KITVSIGIAEKDVVEDFHSWFRRADNALYNAKENGR 553

Query: 253 NRVV-CFS-DIENNT 265
           N V  C++ +I NN+
Sbjct: 554 NTVCICYTNEIRNNS 568


>gi|242277740|ref|YP_002989869.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
 gi|242120634|gb|ACS78330.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
          Length = 555

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 78/172 (45%), Gaps = 13/172 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
             + + +  D L+GL N    +              +  S++  DID+FK IND +GH V
Sbjct: 370 QELQKSAVTDQLTGLPNRRYLMKEGTRLVDIAIRAGQPCSLMIMDIDHFKVINDTYGHTV 429

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  +S     V  +   + R GGEEF   A GS       LA  LR+ +E    N 
Sbjct: 430 GDIVLQQISKAFQEVVRSSDIIARYGGEEFVVVAPGSDIDSGRTLAERLRQSVEARIFNN 489

Query: 211 SSGPSIHITISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNRVVC 257
              P +  TIS G++          +    ++ RAD ALY AK +GRNR+  
Sbjct: 490 DEQP-LTCTISIGVSHYATDIKFGVDAYEDMLARADNALYKAKDTGRNRICI 540


>gi|167828385|ref|ZP_02459856.1| putative transmembrane transcriptional sensor regulator
           [Burkholderia pseudomallei 9]
          Length = 489

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 95/196 (48%), Gaps = 13/196 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------- 125
           + ++   ++  Y++ S+ ++   +   +++L+  D L+GL N  A   +L          
Sbjct: 290 VFALIFVVMSAYLAHSLWRK-STAEAALARLAGTDSLTGLYNRRALDETLEREWRRAVGG 348

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAA 184
           +  L+I+F DID+FK+ ND +GH VGD+V+A +S  +          V R GGEEF    
Sbjct: 349 DRPLAILFVDIDHFKRYNDTYGHQVGDEVLATVSRCIAQQAARLGDVVARYGGEEFVVVL 408

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRA 240
             +    A ++A  +R  +    I         +T+S G+A           I  I+  A
Sbjct: 409 PDTPRGGALVVAERVRLGVRMLGIEHEGSEVGFVTVSVGVAVWHPDGASAPHIDAIVEAA 468

Query: 241 DQALYVAKKSGRNRVV 256
           DQALY AK  GRNRVV
Sbjct: 469 DQALYQAKADGRNRVV 484


>gi|182678198|ref|YP_001832344.1| response regulator receiver modulated diguanylate cyclase
           [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634081|gb|ACB94855.1| response regulator receiver modulated diguanylate cyclase
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 457

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 21/194 (10%)

Query: 81  LLGYISGSILKELFISYNRISQ-------LSRIDCLSGLLNHSAFISSLGSYNEK----- 128
           L+      +L++ ++  +R+         ++ ID L+GL N     + L    ++     
Sbjct: 261 LIARTRTQMLRKRYV--DRLRNTVQVSMDMALIDPLTGLHNRRFLEAQLHRLQQEHGTAS 318

Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
              S++  DID+FK IND  GH  GD+++ + + ++  V     +  R+GGEEF     G
Sbjct: 319 TVFSLMVLDIDHFKAINDRHGHDAGDQILKYFAARVKQVVRAGDWPCRIGGEEFVVLMPG 378

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAER----CHKEPISTIIYRAD 241
           +    A  +A  +R  IE     +S     I +T+S G+AE        EP   +  RAD
Sbjct: 379 AGLDFAKQIAERVRYAIEKDGFVLSGTRERIPVTVSIGLAEAVQQGSGAEPFEALFRRAD 438

Query: 242 QALYVAKKSGRNRV 255
           +ALY AKK+GRNRV
Sbjct: 439 RALYRAKKNGRNRV 452


>gi|77458934|ref|YP_348440.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens
           Pf0-1]
 gi|77382937|gb|ABA74450.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Pseudomonas fluorescens Pf0-1]
          Length = 873

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 60/195 (30%), Positives = 88/195 (45%), Gaps = 11/195 (5%)

Query: 79  SLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNH----SAFISSL--GSYNEKLSI 131
           + ++GY  + S + +   ++ +I  LS  D L+GL N          +L    +   LS+
Sbjct: 411 TAVVGYRGTASDITDEVAAHAQIQHLSLHDALTGLPNRNKLSRYLDDALLLKEHAPPLSV 470

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQ 190
           +  D+D FK IND+ GHP GD V+  ++ +L         V RLGG+EF     G    Q
Sbjct: 471 LMIDLDNFKPINDSLGHPAGDAVLQEVAGRLRECTRDHDIVARLGGDEFVVVLCGMDTHQ 530

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKK 249
           E       L   +   Q  +     +HI  S GIA  R H    S +I  AD ALY AK 
Sbjct: 531 EIDRFCTRLIGSL--HQPILFEQQPLHIGASVGIALSRRHGYVASELIRCADIALYQAKS 588

Query: 250 SGRNRVVCFSDIENN 264
            G+N    F    ++
Sbjct: 589 EGKNTWCYFEAHMSD 603


>gi|67643392|ref|ZP_00442138.1| diguanylate cyclase [Burkholderia mallei GB8 horse 4]
 gi|124384520|ref|YP_001026640.1| GGDEF domain-containing protein [Burkholderia mallei NCTC 10229]
 gi|126448347|ref|YP_001080078.1| GGDEF domain-containing protein [Burkholderia mallei NCTC 10247]
 gi|167893684|ref|ZP_02481086.1| diguanylate cyclase [Burkholderia pseudomallei 7894]
 gi|167910371|ref|ZP_02497462.1| diguanylate cyclase [Burkholderia pseudomallei 112]
 gi|254177876|ref|ZP_04884531.1| GGDEF domain protein [Burkholderia mallei ATCC 10399]
 gi|254197206|ref|ZP_04903628.1| diguanylate cyclase [Burkholderia pseudomallei S13]
 gi|254201642|ref|ZP_04908006.1| diguanylate cyclase [Burkholderia mallei FMH]
 gi|254206974|ref|ZP_04913325.1| diguanylate cyclase [Burkholderia mallei JHU]
 gi|254261114|ref|ZP_04952168.1| diguanylate cyclase [Burkholderia pseudomallei 1710a]
 gi|254358890|ref|ZP_04975163.1| diguanylate cyclase [Burkholderia mallei 2002721280]
 gi|124292540|gb|ABN01809.1| diguanylate cyclase (GGDEF) domain protein [Burkholderia mallei
           NCTC 10229]
 gi|126241217|gb|ABO04310.1| diguanylate cyclase (GGDEF) domain protein [Burkholderia mallei
           NCTC 10247]
 gi|147747536|gb|EDK54612.1| diguanylate cyclase [Burkholderia mallei FMH]
 gi|147752516|gb|EDK59582.1| diguanylate cyclase [Burkholderia mallei JHU]
 gi|148028017|gb|EDK86038.1| diguanylate cyclase [Burkholderia mallei 2002721280]
 gi|160698915|gb|EDP88885.1| GGDEF domain protein [Burkholderia mallei ATCC 10399]
 gi|169653947|gb|EDS86640.1| diguanylate cyclase [Burkholderia pseudomallei S13]
 gi|238524736|gb|EEP88167.1| diguanylate cyclase [Burkholderia mallei GB8 horse 4]
 gi|254219803|gb|EET09187.1| diguanylate cyclase [Burkholderia pseudomallei 1710a]
          Length = 454

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 10/228 (4%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           ++A  +F    F+   G+              S   +   ++  +    G +L+EL  + 
Sbjct: 228 WLAHAVFAGGFFMLSFGVVQALMTTRSFATVYSQQDLMARLAESMARTEG-VLQELKRTN 286

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
            ++  L+  D L+G  N   FI  + S   +        S++  D+D FK INDN+GH V
Sbjct: 287 QKLEHLATTDPLTGASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFKTINDNYGHQV 346

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+     Q +        + R+GGEEF           A+ +A  +R  I N+   I
Sbjct: 347 GDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRTTIANASFGI 406

Query: 211 SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV 
Sbjct: 407 -DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 453


>gi|296134291|ref|YP_003641538.1| diguanylate cyclase with GAF sensor [Thermincola sp. JR]
 gi|296032869|gb|ADG83637.1| diguanylate cyclase with GAF sensor [Thermincola potens JR]
          Length = 574

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 11/194 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKL 129
            +++L G  + ++   L   Y +I +L+  D L+ + NH  F             Y  K 
Sbjct: 374 ILTILGGQAAVAMANALL--YKKIEKLAITDGLTKVYNHRYFYKKFEEEYQRSQRYGCKF 431

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  DIDYFK+ ND FGH  GD  +  ++  +         V R GGEEFA     +  
Sbjct: 432 SVIMIDIDYFKRFNDEFGHKAGDTALFTVAKIIKTNTRNIDTVARYGGEEFAILLPETDS 491

Query: 190 QEAAILANDLRKIIENSQINISSG-PSIHITISAGIAERCHKE-PISTIIYRADQALYVA 247
            +A I+A  +RK I  +   I+   P + +T+S G++           ++  ADQALY +
Sbjct: 492 GDAKIVAERIRKAISETVFRIADDKPPVGVTVSIGVSSYPADTKDPQQVVELADQALYYS 551

Query: 248 KKSGRNRVVCFSDI 261
           K+ G+NRV  +S +
Sbjct: 552 KEHGKNRVTVWSQM 565


>gi|254000469|ref|YP_003052532.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4]
 gi|253987148|gb|ACT52005.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4]
          Length = 782

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 112/241 (46%), Gaps = 13/241 (5%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
            +A +I I+ I+   +  T        L   LS++ +++    +L   S  +L    +  
Sbjct: 276 LMAMLIAISTIYFMMMDTTTPIAKSIALGSCLSIIALAMVRQSILLAESERLLTAEQLIE 335

Query: 98  N---RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
               R   L+  D L+GL N   F   L          N ++ ++F DID+FK IND+ G
Sbjct: 336 EGQMRYQHLAHHDILTGLPNRLLFQDRLTHALALSARNNNRVGMLFIDIDHFKNINDSLG 395

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206
           H +GD+++  + ++L +         RLGG+EF        +  EAA +A++L + +  +
Sbjct: 396 HVIGDELLVAIVERLKLRIREQDTFARLGGDEFVLLIEQLQNASEAATIASNLLEAL-KT 454

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             ++S    + I+ S GI+      +  + +I  AD A+Y AK +GRNR   +++     
Sbjct: 455 PFHLSGNCEVVISASIGISVCPEDTQDATQLIRNADSAMYRAKDTGRNRYQFYTEELTQR 514

Query: 266 C 266
            
Sbjct: 515 A 515


>gi|239816552|ref|YP_002945462.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Variovorax paradoxus S110]
 gi|239803129|gb|ACS20196.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Variovorax paradoxus S110]
          Length = 1107

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 11/194 (5%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSI 131
           SL +  +  +  K+   +   +  ++  D L+GL N +A    L         + ++ ++
Sbjct: 646 SLRVIALQIAQYKQRKQAERSLRFMASHDGLTGLFNRAALQHELARAIKRSNRHQKQFAV 705

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQ 190
           +F D+D FK IND  GH VGD++I    ++L  +      V R GG+EF       SS  
Sbjct: 706 IFVDLDRFKHINDTLGHGVGDEMIKICGERLTALLREADVVARFGGDEFVLLLENLSSAN 765

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           +AA LA  +       +    +G  +H++ S G++           ++  AD A+Y AK+
Sbjct: 766 DAAGLAEKVLACCA--EPFFLAGRELHVSASVGVSIYPDNGADAEALLKNADTAMYRAKE 823

Query: 250 SGRNRVVCFSDIEN 263
            GRN    ++   N
Sbjct: 824 RGRNTFRFYAAKMN 837


>gi|254430045|ref|ZP_05043752.1| GGDEF domain protein [Alcanivorax sp. DG881]
 gi|196196214|gb|EDX91173.1| GGDEF domain protein [Alcanivorax sp. DG881]
          Length = 367

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 116/251 (46%), Gaps = 19/251 (7%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIF--LFYIGLTPFY---GLEYILVENLSLVIISI 76
           F     M+ F +   + IA     +  +  + ++ L   +    L   L++ L   +IS+
Sbjct: 114 FFAALLMVSFRLSGKVMIAVAFLASAAYALMLWVALMDRWVQLSLSVELLQWLVFAMISV 173

Query: 77  TISLLLGYIS------GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--- 127
           + ++  G ++          +EL  +  ++ +++  D L+GL N    +  L        
Sbjct: 174 SFAVTGGGVNRLRNALAEKNRELANAVEKVREMAIRDDLTGLFNRRHLLEILERQRALSD 233

Query: 128 ----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                 ++ + D+D+FK+IND  GH  GD+V+   S+  +       + GRLGGEEF   
Sbjct: 234 GKGVPFAVCYVDLDHFKKINDRHGHDWGDRVLRQFSELALSGMRDGDYFGRLGGEEFLLV 293

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              S    A ++A  LR+     + +   GP+  +++S G+A+    E +  ++ RADQ 
Sbjct: 294 LPQSDAHGALLVAERLRQRWREQRFDAQGGPA-TVSLSVGVADYRDGESVDELLNRADQG 352

Query: 244 LYVAKKSGRNR 254
           LY AK  GR++
Sbjct: 353 LYKAKSGGRDQ 363


>gi|83747622|ref|ZP_00944658.1| Hypothetical Protein RRSL_02307 [Ralstonia solanacearum UW551]
 gi|83725674|gb|EAP72816.1| Hypothetical Protein RRSL_02307 [Ralstonia solanacearum UW551]
          Length = 487

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 102/234 (43%), Gaps = 20/234 (8%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           + +F+A      +I+  +     + G+         LV++   ++L + Y+    L+   
Sbjct: 263 YPLFVAVGTATDDIYDNWKARAWWIGV---------LVVLFNVVTLAMAYLFAQHLERRI 313

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
               R ++L+  D L+GL N  A    L           + LS++  D+D+FK  ND +G
Sbjct: 314 EEQRRHAELAATDALTGLANRRALDERLDAEWRRAARERQPLSVLMIDVDHFKAYNDQYG 373

Query: 148 HPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           HP GD  +  ++  +            R GGEEF     GS    A ++A  +R  I+  
Sbjct: 374 HPDGDVALQAVARCIQANLRRPGDLAARYGGEEFCVVLPGSDLGSANVVAETIRHAIQAL 433

Query: 207 QINISSGPSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRVVC 257
            I  +   +  +T+S G A       ++  +T+   AD  LY AK SGRNR V 
Sbjct: 434 DIPHARSDAAVLTVSIGAASGTPASGEQRTATLTKAADAQLYRAKTSGRNRTVA 487


>gi|320332739|ref|YP_004169450.1| GAF sensor-containing diguanylate cyclase [Deinococcus maricopensis
           DSM 21211]
 gi|319754028|gb|ADV65785.1| diguanylate cyclase with GAF sensor [Deinococcus maricopensis DSM
           21211]
          Length = 607

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 76/172 (44%), Gaps = 8/172 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNF 146
                 +   S  D L+GL N                 +   LSI+  D+D+FK+ ND F
Sbjct: 433 LRLRETLRNQSIRDPLTGLFNRRYLDETFEREVRRAERHRRSLSILMLDVDHFKRFNDTF 492

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD V+  L+  +   F     V R GGEEFA     +S Q+    A  LR      
Sbjct: 493 GHEAGDAVLVALAQLMTRHFRREDIVCRYGGEEFAVLLTDASFQDGLNRAEALRAATAEL 552

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  +       I+IS G++    H    + ++  AD ALY AK++GRNRV+ 
Sbjct: 553 RPTLQGRALGGISISVGVSGFPEHARDSAELLRLADSALYEAKQAGRNRVMA 604


>gi|313200148|ref|YP_004038806.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. MP688]
 gi|312439464|gb|ADQ83570.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. MP688]
          Length = 819

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 58/194 (29%), Positives = 91/194 (46%), Gaps = 11/194 (5%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------ 128
           S T  ++      S + E      RI QL+  D L+ L N   F   L    E+      
Sbjct: 367 SATGEVIGAMTVASDVTENSRYRKRIEQLAYHDILTELPNRLLFNQKLQMLIEQTPTNKH 426

Query: 129 -LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
              ++F D+D FK IND  GH VGDK++  +S ++  + G    + R+GG+EFA +    
Sbjct: 427 GFCLLFIDLDNFKTINDTLGHSVGDKLLIEVSRRIRQLLGKDDMLARMGGDEFAISLPHC 486

Query: 188 -SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALY 245
            S  +AA+LA  +   + N    +SS     ++ S GIA        +  ++  AD A+Y
Sbjct: 487 LSRLDAALLAARIIDAL-NVPFEVSS-IKFFVSASMGIAFYPEDSSHLDDLLKHADLAMY 544

Query: 246 VAKKSGRNRVVCFS 259
            AK+ GRN    ++
Sbjct: 545 HAKRQGRNNFQFYN 558


>gi|158422834|ref|YP_001524126.1| putative diguanylate cyclase [Azorhizobium caulinodans ORS 571]
 gi|158329723|dbj|BAF87208.1| putative diguanylate cyclase [Azorhizobium caulinodans ORS 571]
          Length = 514

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/233 (28%), Positives = 98/233 (42%), Gaps = 23/233 (9%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
             + +AT   I +IFL +      Y +       L++   SI I+L+L +     L    
Sbjct: 270 LPLVVATGQSIRDIFLPWR-----YRVLVGTAAVLTVGFASIAIALVLRH----DLMRRS 320

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFG 147
                + QLS  D L+G+ N   F                 ++++  DID FK +ND  G
Sbjct: 321 RLQAELLQLSLTDDLTGIANRRRFFDVAIREWQRAQRLGSPVAVLMIDIDRFKLLNDRLG 380

Query: 148 HPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  GD V+  ++  +      P     R GGEEF A    +    A   A  +R  +E  
Sbjct: 381 HAAGDAVLQAIAQLIRHSLRRPADLAARYGGEEFTAILPDTDMAGAFQTAERIRTQVERD 440

Query: 207 QINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I         +T+S GIA       E    ++  AD+ALY AK+SGRNRV+ 
Sbjct: 441 VIRGDH----PVTVSIGIAAAIASPNETFENVVAAADRALYRAKESGRNRVMV 489


>gi|119486307|ref|ZP_01620366.1| hypothetical protein L8106_16674 [Lyngbya sp. PCC 8106]
 gi|119456520|gb|EAW37650.1| hypothetical protein L8106_16674 [Lyngbya sp. PCC 8106]
          Length = 1260

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 106/254 (41%), Gaps = 22/254 (8%)

Query: 14   CHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI 73
            CH + LE ++     +  ++   I     ++   I         +   E  L+  LS   
Sbjct: 1016 CHIELLERYA-----VKANLVVPIIYQDKLWGLMIAHHCRDTRYWEQHEITLLSELS--- 1067

Query: 74   ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---- 129
                    +    G +  +L I+   + +L+  D L+ + N   F   L    ++L    
Sbjct: 1068 ----AQTAIAIHQGQLYHQLEIANQELERLAARDGLTQIANRHCFDRVLEKEWQRLMRSP 1123

Query: 130  ---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAAL 185
               S++  DID FK  ND +GH  GD  +  ++  +   V      V R GGEEFA    
Sbjct: 1124 DQLSLILCDIDNFKLYNDTYGHQAGDYCLQQVAQAIQAGVKRPADLVARYGGEEFAVILP 1183

Query: 186  GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQA 243
             +S + A  +A ++R  +    ++ +      +T+S G+          +S +I  AD+A
Sbjct: 1184 NTSLEGALRVAEEIRVRVRGLGVSHTGSAHQCVTLSLGVTSLIPNTSSSVSKLIGAADEA 1243

Query: 244  LYVAKKSGRNRVVC 257
            LY AK +GR+R  C
Sbjct: 1244 LYRAKATGRDRSCC 1257



 Score =  120 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 78/184 (42%), Gaps = 20/184 (10%)

Query: 97  YNRISQL----SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
             ++S+L    +  D ++ L NH      L        +  E ++I   D+D FK IN++
Sbjct: 416 QQQLSRLTNNQASYDNVTKLPNHIVLEQQLTLALIDALNNAEIMAIAILDLDKFKNINES 475

Query: 146 FGHPVGDKVIAFLS----DQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLR 200
           FG+ VGD+++  ++    D+L  +      + R  G+ F       +   +A      L 
Sbjct: 476 FGYQVGDQLLQEVAIRLQDRLAQLQLKNSLLARWHGDGFVFILSEVAYADDAISFCQSLL 535

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++  S+       +I++  S GI       E   T++  A+ AL  AK+ G N    +S
Sbjct: 536 NVL--SEPFYLQNQAIYLNASIGITLAPYDGETSETLLRNAEIALDQAKQYG-NTYKLYS 592

Query: 260 DIEN 263
              N
Sbjct: 593 PKAN 596


>gi|298292251|ref|YP_003694190.1| diguanylate cyclase [Starkeya novella DSM 506]
 gi|296928762|gb|ADH89571.1| diguanylate cyclase [Starkeya novella DSM 506]
          Length = 414

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 83/175 (47%), Gaps = 8/175 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNF 146
             +   +  L+  D L+GL N    I              ++ S++  DID FK INDN 
Sbjct: 230 RQTEEHLRHLAVSDPLTGLWNRRRLIEEGQRELELGATAGKECSLLIVDIDRFKSINDNH 289

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+V+  ++ + +        + R+GGEEFA    G+S  EA  +A  L + I   
Sbjct: 290 GHAAGDEVLRTVAQRGLSQLRRSDVMARIGGEEFAVLLPGTSALEARTIAARLLRAIR-V 348

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            + I     I +T S G      ++ +  ++ R D+ALY AK  GRNRVV   DI
Sbjct: 349 PVVIGDDVVIEVTASIGGTGSTPEDDMDALMARCDRALYAAKTGGRNRVVFDDDI 403


>gi|317051786|ref|YP_004112902.1| diguanylate cyclase [Desulfurispirillum indicum S5]
 gi|316946870|gb|ADU66346.1| diguanylate cyclase [Desulfurispirillum indicum S5]
          Length = 433

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 97/200 (48%), Gaps = 11/200 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           YI+  NL     +  ++  +  ++ + + EL +   R  +L+  D L+ +LN   F+  L
Sbjct: 235 YIVRANLISASANPDVAHQICVVTFANVTELEMEKQRFQELAMRDPLTDILNRKFFVQEL 294

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                    YN   S+V FDID FK +ND +GH VGD V+  +   +          GR 
Sbjct: 295 EREIARSVRYNHTFSLVMFDIDRFKPVNDTYGHQVGDYVLKEVVTLVSFHMRRTDVFGRY 354

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           GGEEF      +  + A  LA  +R+ I++   +       H+T S G+AE  ++     
Sbjct: 355 GGEEFIILLPETGLEGACALAEKIRETIDSHIFDFIE----HLTCSFGVAEFNNELTSFE 410

Query: 236 IIYRADQALYVAKKSGRNRV 255
           +I R D ALY AK +GRNR+
Sbjct: 411 LIKRTDDALYKAKNNGRNRI 430


>gi|313496751|gb|ADR58117.1| Sensory box protein [Pseudomonas putida BIRD-1]
          Length = 1247

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 86/181 (47%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           + +  +  +  ++   +  D L+GL N + F + L          N + +++F D+D FK
Sbjct: 791 ADISSIKHAQAKLDYQAHHDPLTGLPNRTLFENRLQGVLTCAQVSNRQGAVLFLDLDRFK 850

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            IND+ GHPVGD ++  ++ +L         V RLGG+EF     G  +  +A+ +AN L
Sbjct: 851 HINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFIILLPGLHKPSDASTIANKL 910

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                      +       + S GI+        +ST+I  AD A+Y +K  GRNRV  +
Sbjct: 911 LACFNA--PFQAGEHEFFTSASIGISLYPQDGTDVSTLIRNADAAMYRSKAKGRNRVEAY 968

Query: 259 S 259
           +
Sbjct: 969 T 969


>gi|238927426|ref|ZP_04659186.1| possible diguanylate cyclase [Selenomonas flueggei ATCC 43531]
 gi|238884708|gb|EEQ48346.1| possible diguanylate cyclase [Selenomonas flueggei ATCC 43531]
          Length = 620

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 57/190 (30%), Positives = 95/190 (50%), Gaps = 17/190 (8%)

Query: 81  LLGYISGSIL---KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLS 130
           +L ++S  I    +EL  +  +++QL+  D L+ LLN       L        +    LS
Sbjct: 427 MLAFMSHFIRVSEEELHTANQQLTQLAIRDTLTNLLNRREMERLLKEAVALSQAQKTPLS 486

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  DID+FK +NDN+GH +GDKV+  +SD +           R GG+EF     G+   
Sbjct: 487 VILMDIDHFKAVNDNYGHDMGDKVLLTVSDAISRTIRGSDAGCRWGGDEFFIILQGAPLA 546

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKK 249
            A  +   +R+ +E +++        ++TIS G A    ++     +   AD+ALY AKK
Sbjct: 547 VAGRVGERIRRRVEEAKMPFHH----NVTISVGAAAFDPEQDNELQLFKNADEALYQAKK 602

Query: 250 SGRNRVVCFS 259
           +GRN  V ++
Sbjct: 603 AGRN--VVYA 610


>gi|26987128|ref|NP_742553.1| sensory box protein [Pseudomonas putida KT2440]
 gi|24981758|gb|AAN66017.1|AE016230_8 sensory box protein [Pseudomonas putida KT2440]
          Length = 1247

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 86/181 (47%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           + +  +  +  ++   +  D L+GL N + F + L          N + +++F D+D FK
Sbjct: 791 ADISSIKHAQAKLDYQAHHDPLTGLPNRTLFENRLQGVLTCAQVSNRQGAVLFLDLDRFK 850

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            IND+ GHPVGD ++  ++ +L         V RLGG+EF     G  +  +A+ +AN L
Sbjct: 851 HINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFIILLPGLHKPSDASTIANKL 910

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                      +       + S GI+        +ST+I  AD A+Y +K  GRNRV  +
Sbjct: 911 LACFNA--PFQAGEHEFFTSASIGISLYPQDGTDVSTLIRNADAAMYRSKAKGRNRVEAY 968

Query: 259 S 259
           +
Sbjct: 969 T 969


>gi|320333551|ref|YP_004170262.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
 gi|319754840|gb|ADV66597.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
          Length = 376

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 105/232 (45%), Gaps = 11/232 (4%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
            A + +   + +  + L   +    + V  L ++        +L  I  ++         
Sbjct: 142 FAGITWGLALLIGVLNLFALHADGALTVRVLGIMAQFYLSGAVLIGIQYALAFARKRDRE 201

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            +  ++ +D L+GL N       L  +    +  LS+V  D+D+FK+IND +GH VGD V
Sbjct: 202 -VHLMAYMDFLTGLPNRRYAEGHLAQHTRPGHAPLSVVMLDLDHFKRINDTYGHHVGDHV 260

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  L+  L    G    + R GGEEF      +   +A  LA  +R+ +E    +     
Sbjct: 261 LRELAQVLSRHTGRARVLARWGGEEFLLILPDTVLADAHALAERMRQSVEAHVFD----- 315

Query: 215 SIHI-TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            + + TISAG+A+    E    ++ RAD ALY AK  GRNRV+  ++    T
Sbjct: 316 EVGVATISAGVAQAEADEAAHAVLRRADAALYRAKGQGRNRVMADTEPRGGT 367


>gi|195953692|ref|YP_002121982.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195933304|gb|ACG58004.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 610

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/176 (36%), Positives = 89/176 (50%), Gaps = 12/176 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           I KE  +S   + Q S  D L+G+ N       L         Y   LS++ FDID+FK 
Sbjct: 439 ITKEKELSELLLKQ-SIEDTLTGIYNRRYLKDKLERHVNLAKRYERPLSVIMFDIDFFKH 497

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH VGDKV+  +S  +           R GGEEF   A  +++++A ILA  LR 
Sbjct: 498 INDTFGHDVGDKVLIAISKVVSENIRNTDIFARYGGEEFIIVAPETTKEDAKILAEKLRS 557

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +I N          I++T S G+      +   T++ R D ALY AK++GRNRVV 
Sbjct: 558 LIRNLHFE----EGINVTCSFGVVSLEKPDTKETLLKRVDNALYEAKRTGRNRVVV 609


>gi|83716350|ref|YP_438601.1| GGDEF domain-containing protein [Burkholderia thailandensis E264]
 gi|83650175|gb|ABC34239.1| GGDEF domain protein [Burkholderia thailandensis E264]
          Length = 507

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 94/204 (46%), Gaps = 13/204 (6%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYN---RISQLSRIDCLSGLLNHSAFISSL 122
           +    LV + +   +++   +  + +EL    +    + +L+R D L+GL N  AF  +L
Sbjct: 299 IRAQRLVALMLVFGVVIVGGTALLSRELRWRRHAELHLQRLARTDALTGLGNRRAFDENL 358

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGR 174
                        LS++F DID FK  ND++GH  GD V+  +   L   V      V R
Sbjct: 359 RSEWARALRTGRPLSLLFVDIDQFKAYNDHYGHQAGDDVLREVGRCLALNVRRAADDVSR 418

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--P 232
            GGEEF         + AA +A  +R+ + +  I     P   +T+S G+          
Sbjct: 419 YGGEEFVITLPDIDAKSAAAIAEHIRRAVYDLDIEHVRSPYARVTVSIGLVTSHEHAAHS 478

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
            +T++  AD ALY AK +GRNRV 
Sbjct: 479 DTTLVKMADAALYQAKSTGRNRVC 502


>gi|296391416|ref|ZP_06880891.1| motility regulator [Pseudomonas aeruginosa PAb1]
          Length = 1385

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 15/192 (7%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            S + E   S  RI +L+  D L+ L N + F   L           + + ++F D+D FK
Sbjct: 932  SDISERKASERRIHRLAYYDALTHLPNRTLFQDRLHTALQQAERNGQWVVLMFLDLDRFK 991

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAIL 195
             IND+ GH  GD+++  ++ +L         V R+GG+EF        ++E     A  +
Sbjct: 992  PINDSLGHAAGDRMLQEVATRLSACVSQDDTVARMGGDEFTLLLPSQGDREIALKRAIQV 1051

Query: 196  ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            A  +   +   +     G    +T S G+A        +S ++  AD A+Y AK+ G+N 
Sbjct: 1052 AELILGRLA--RPFTLEGREFFVTASIGVALSPQDGAELSLLMKNADTAMYHAKEMGKNN 1109

Query: 255  VVCFSDIENNTC 266
               +    N   
Sbjct: 1110 FQFYQAEMNARA 1121


>gi|157737071|ref|YP_001489754.1| GGDEF domain-containing protein [Arcobacter butzleri RM4018]
 gi|157698925|gb|ABV67085.1| GGDEF domain protein [Arcobacter butzleri RM4018]
          Length = 551

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/245 (29%), Positives = 121/245 (49%), Gaps = 26/245 (10%)

Query: 27  FMIYFS---------IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISIT 77
           FMIYF          I FS FI ++ ++ +  L    L P+      +   + L+++S +
Sbjct: 313 FMIYFFFKGNKETKIITFSFFIISIYWLYS-SLIAAALVPWEEYPSDVAVFICLLLLSYS 371

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS 130
           +   L Y      +EL  +   ++ LS  D L+ L N      +L         Y E  S
Sbjct: 372 MVNKLNYT-----QELEDAKEELTILSSTDYLTKLNNRKNIDLALKMNENLYKRYKEPFS 426

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++ FD+D FK++ND +GH VGDK+I  ++D L         +GR GGEEF    L ++ Q
Sbjct: 427 VILFDLDDFKKVNDTYGHLVGDKIIIEIADLLRKYTRESDIIGRWGGEEFIIICLKTNLQ 486

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           EA ++A +L++ +   + +         T S G++     + I+ ++ RAD A+Y AK +
Sbjct: 487 EALVVALNLKEKVSLHKFDKVGNK----TASFGVSTFKDNDTITELLTRADDAMYKAKTN 542

Query: 251 GRNRV 255
           G+NRV
Sbjct: 543 GKNRV 547


>gi|152973289|ref|YP_001338435.1| putative transmembrane protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150958138|gb|ABR80168.1| putative transmembrane protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 269

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/265 (27%), Positives = 119/265 (44%), Gaps = 20/265 (7%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE 67
            L  W    K +    PH   +  ++   +FI T+ F  NI  F +   P +    I+ E
Sbjct: 1   MLWAWHVVTKAMLLTPPHFNYLVIALLSILFIGTIAFSNNITAFTLHSLPTFLACLIMAE 60

Query: 68  N---------LSLVIISITISLLLGYISGS----ILKELFISYNRISQLSRIDCLSGLLN 114
                       L I  IT+  ++   S +    ++ +L    N ++ LS +D L+GL N
Sbjct: 61  GEQWLRMTYCFMLPIAGITLQNIIQKRSDAFTQGLMDKLMHERNTLNDLSMLDPLTGLYN 120

Query: 115 HSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
                + L +      +   ++  DID+FK  ND++GH +GD+ +  +S  +     +  
Sbjct: 121 RRGLQNRLDTLLALDGDNHYVLLLDIDHFKAYNDHYGHMIGDQALIRVSAAIRNAVRSRD 180

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAERC 228
            V R GGEEF      SSE+ A   A  +R+ + + +I      S+  ++TIS G+    
Sbjct: 181 IVARFGGEEFMVLLTNSSEETAWKTAERIRQRVYDLKIPHMFNESVATNVTISIGLTPLI 240

Query: 229 HKEPISTIIYRADQALYVAKKSGRN 253
             + I   + RAD ALY AK  GRN
Sbjct: 241 -NDNIEQALARADGALYEAKNKGRN 264


>gi|119775539|ref|YP_928279.1| sensory box protein [Shewanella amazonensis SB2B]
 gi|119768039|gb|ABM00610.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella amazonensis SB2B]
          Length = 751

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 111/238 (46%), Gaps = 17/238 (7%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY--------ISGSILKELFI 95
           F  N++        ++G  +   +N +L     +IS + G            S +  L  
Sbjct: 258 FFENLWRALKTQGHWHGEIWNRRKNGTLFAEQTSISAVYGEDGQVRCFVAVFSDISLLKQ 317

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           +   ++QL+  D L+ L N S         I    +   +L+++  D+D FK IND+FGH
Sbjct: 318 TEAEVAQLAWHDPLTRLPNRSKLTTISQQQIKLAANRKTRLALLLIDVDLFKHINDSFGH 377

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GDKV+  LS++L  + G    + R+GG+EF          +  ++ + +++  + S  
Sbjct: 378 LAGDKVLLSLSERLAALLGAEDTLARIGGDEFVLLTQVRRRDDIPVILSAIQRAFDTS-F 436

Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           + S G S+ ++ S GIA      +   T++  AD A+Y AK+ GRNR   +++    +
Sbjct: 437 DTSEGESVRLSASIGIAVYPDDGDNPDTLLKNADAAMYRAKQQGRNRHAFYTEQMTQS 494


>gi|149909871|ref|ZP_01898521.1| hypothetical protein PE36_13974 [Moritella sp. PE36]
 gi|149807036|gb|EDM66994.1| hypothetical protein PE36_13974 [Moritella sp. PE36]
          Length = 568

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 8/173 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
             ++ + +  D L+GL N   +             + ++LS++  D+D+FK+ NDN+GH 
Sbjct: 363 QEKLREQAISDPLTGLYNRRYYEETINQELMRAKRHKQELSLLMLDLDHFKRFNDNYGHD 422

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  +   L+        + RLGGEEF     G+  + A  +AN L K I    + 
Sbjct: 423 AGDYVLKTIGSLLLESMRGEDTICRLGGEEFIIVLPGTGIEAARQIANGLCKSINELHLA 482

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +       +++S GI+    +      +   +D ALY AK+ GRN+   +SD+
Sbjct: 483 MKDLSLGKLSVSIGISTYPINGMQKDELTKLSDIALYEAKERGRNQSCHYSDL 535


>gi|124267884|ref|YP_001021888.1| diguanylate cyclase [Methylibium petroleiphilum PM1]
 gi|124260659|gb|ABM95653.1| diguanylate cyclase [Methylibium petroleiphilum PM1]
          Length = 251

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 78/174 (44%), Gaps = 9/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDN 145
           L    + +  LS  D L+GL N   F  +L    ++++       ++  DID+FK++ND 
Sbjct: 46  LQQLVDALCDLSSRDALTGLANRRQFDLALERETDRVARSGEAALVLLLDIDHFKRVNDT 105

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD V+  ++  L         V R GGEEFA          A   A  +R+ +E 
Sbjct: 106 YGHAAGDMVLQAVARTLQECVRPMDTVARYGGEEFAIVLPNCPPAFAQAAAERVRRAVEA 165

Query: 206 SQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
             + +  G  + +T+SAG A      +        RAD  LY AK  GRNR   
Sbjct: 166 RTVPLPQGTMLSVTLSAGGAFAPPWVRSSARLWTERADAQLYRAKAEGRNRTCI 219


>gi|195952621|ref|YP_002120911.1| diguanylate cyclase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932233|gb|ACG56933.1| diguanylate cyclase [Hydrogenobaculum sp. Y04AAS1]
          Length = 640

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 57/214 (26%), Positives = 99/214 (46%), Gaps = 9/214 (4%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHS 116
            + +  I+ E+     +++ I  + GY+  +I + E  +   ++ + S  D L+G  N  
Sbjct: 421 VHNVLQIVYEHYMKDFVNMMIPYIKGYLDEAIPVMESKLLMEKLKEQSIKDQLTGFYNRR 480

Query: 117 AFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
               ++           E   ++  D+D+FK+IND +GH VGD V+  ++  +       
Sbjct: 481 YIEEAIDPILNNAKRKGETTGVLMIDVDHFKEINDKYGHDVGDMVLKTVAQTIKESIRES 540

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               R GGEEF          ++  +A  +RK +EN  I + +  +I  TIS G++E   
Sbjct: 541 DIPIRFGGEEFMVLLTNVKPGDSESVAEKIRKNMENRVIKLPNNTTIKRTISIGVSEIPT 600

Query: 230 KEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
                   +  AD ALY AK+SGRN+VV +    
Sbjct: 601 DTDKFWQAVKFADVALYKAKESGRNKVVRYQKDM 634


>gi|88797380|ref|ZP_01112970.1| diguanylate cyclase (GGDEF domain) [Reinekea sp. MED297]
 gi|88780249|gb|EAR11434.1| diguanylate cyclase (GGDEF domain) [Reinekea sp. MED297]
          Length = 300

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 107/224 (47%), Gaps = 8/224 (3%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS---GSILKELFIS 96
           A ++++ ++ L    ++ +  L + + E+L  +   + +S+ +   S    +++ +    
Sbjct: 77  ACLVWLMSLKL-VEEVSLYNELWFQIAESLFAIAGVVLLSMGIAAWSRDYQALIDDTEAK 135

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            N+  QLS  D L+GL+N +A+   +  +    +   ++  D+D+FKQIND +GH  GD 
Sbjct: 136 KNQYKQLSITDALTGLMNRTAYNQRIEQFVSDQQPYLLMLIDLDHFKQINDRYGHDAGDA 195

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  +   L           R+GGEEFA      S  +A  +A  LR  IE   I     
Sbjct: 196 ALKQVGALLGSNSRNQEDCFRVGGEEFAIVLTQCSLSQAESIAERLRTAIETHAIRWQD- 254

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +  T+S G+      E   T    AD ALY AK++GRNRVV 
Sbjct: 255 AELSCTVSIGLCLSQTGESPQTTYRHADAALYEAKQNGRNRVVV 298


>gi|148545672|ref|YP_001265774.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida F1]
 gi|148509730|gb|ABQ76590.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas putida F1]
          Length = 1247

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 86/181 (47%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           + +  +  +  ++   +  D L+GL N + F + L          N + +++F D+D FK
Sbjct: 791 ADISSIKHAQAKLDYQAHHDPLTGLPNRTLFENRLQGVLTCAQVSNRQGAVLFLDLDRFK 850

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            IND+ GHPVGD ++  ++ +L         V RLGG+EF     G  +  +A+ +AN L
Sbjct: 851 HINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFIILLPGLHKPSDASTIANKL 910

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                      +       + S GI+        +ST+I  AD A+Y +K  GRNRV  +
Sbjct: 911 LACFNA--PFQAGEHEFFTSASIGISLYPQDGTDVSTLIRNADAAMYRSKAKGRNRVEAY 968

Query: 259 S 259
           +
Sbjct: 969 T 969


>gi|238799082|ref|ZP_04642539.1| Sensory box-containing diguanylate cyclase [Yersinia mollaretii
           ATCC 43969]
 gi|238717062|gb|EEQ08921.1| Sensory box-containing diguanylate cyclase [Yersinia mollaretii
           ATCC 43969]
          Length = 853

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 62/188 (32%), Positives = 87/188 (46%), Gaps = 11/188 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNH---SAFISS----LGSYNEKLSIVFFDIDY 138
           + S +     +  RI  LS  D L+GL N      F+ S    L +    L I+  D+D 
Sbjct: 411 TASDITREIEAQERIQHLSLHDALTGLPNRLRMKEFLESKLRNLAAAPHPLVILNVDLDK 470

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK +ND FGH  GD V+  +S++L         V R GG+EF     G SS +E   L  
Sbjct: 471 FKPVNDTFGHVAGDMVLHQVSERLRSCLRDQDLVARQGGDEFILIITGLSSIKEIEQLCA 530

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            +   IE+    + +G  I+I  S GIA           ++  AD A+Y AK SGRNR  
Sbjct: 531 RVIARIES--PYVINGQDIYIGASIGIALAPQDSMQAEELLRFADIAMYEAKNSGRNRWS 588

Query: 257 CFSDIENN 264
            +S   N+
Sbjct: 589 FYSSEMND 596


>gi|307822937|ref|ZP_07653167.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylobacter tundripaludum SV96]
 gi|307735712|gb|EFO06559.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylobacter tundripaludum SV96]
          Length = 1045

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 82/183 (44%), Gaps = 10/183 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E      RI  L+  D L+GL N +     L          N  L+++F D+D+FK 
Sbjct: 603 DITEQKCIEERIHYLANFDPLTGLPNRTQLNDHLKYALSLAKRSNGHLALMFLDLDHFKD 662

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH +GD ++  L+ +L +V  T   V RLGG+EF     G     AA +A  L  
Sbjct: 663 INDSLGHSIGDALLIELAKRLRLVLRTEDTVTRLGGDEFILLLPGVDAIGAAHVAQKLLD 722

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
            I  S         + +T S GIA        + T+   AD A+Y AK+ GR     F+ 
Sbjct: 723 AIAGS--YWIELYDLALTASIGIALYPADGVDLETLSKSADAAMYRAKQEGRQCYRFFTQ 780

Query: 261 IEN 263
              
Sbjct: 781 EMQ 783


>gi|296387790|ref|ZP_06877265.1| two-component response regulator [Pseudomonas aeruginosa PAb1]
          Length = 342

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 88/177 (49%), Gaps = 12/177 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+GL N   F   L            +LS++  D+DYFK  N
Sbjct: 158 QQLLETNLVLQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYN 217

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD+ +  ++  +      +     R GGEEFA    G+S   A +LA  +R+ 
Sbjct: 218 DTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRT 277

Query: 203 IENSQINISS-GPSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRV 255
           +E+ QI+     P  ++T+S G++        +    +I  ADQALY AK +GRN+V
Sbjct: 278 VESLQISHDQPRPGSYLTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGRNQV 334


>gi|238756376|ref|ZP_04617687.1| Predicted diguanylate cyclase [Yersinia ruckeri ATCC 29473]
 gi|238705390|gb|EEP97796.1| Predicted diguanylate cyclase [Yersinia ruckeri ATCC 29473]
          Length = 365

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 74/271 (27%), Positives = 118/271 (43%), Gaps = 20/271 (7%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYIL--V 66
           L  W    K           +  S+F   FI+T+    N   F +   P      +L   
Sbjct: 82  LWAWQVTLKYEYLGRDENNFLLISLFTIFFISTIALSDNFIAFCLHSAPAAIAVIVLDDF 141

Query: 67  ENLSLVIISITISLLLGYISGSILKE-----------LFISYNRISQLSRIDCLSGLLNH 115
           +N+  +I +I + L+   +   +L+            L+    + S LS ID L+GL N 
Sbjct: 142 QNIFRIIFTIMLPLIGFCLHHLMLRRSDEFTRKLVDHLYDEREKFSDLSMIDPLTGLYNR 201

Query: 116 SAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
               + L            ++  DID+FK  NDN+GH +GD+ +  ++  +     +   
Sbjct: 202 RGLENRLGMLLAQSPGNHYVLLLDIDHFKAYNDNYGHTMGDQALVRVAAAIRDAVRSRDI 261

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH--ITISAGIAERCH 229
           V R GGEEF       SE+ A+ LA  +R+ +    I       +   +T+SAGI+   H
Sbjct: 262 VVRYGGEEFLVLLTHVSEEYASQLAERVRQRVLGFDIPHVFNHKVSTTVTLSAGIS-PLH 320

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              +   +  AD+ALY AKK+GRN+V   SD
Sbjct: 321 PTDLGASLKAADEALYQAKKNGRNKVEFASD 351


>gi|153009474|ref|YP_001370689.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188]
 gi|151561362|gb|ABS14860.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188]
          Length = 263

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 114/239 (47%), Gaps = 14/239 (5%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEY-----ILVENLSLVIISITISLLLGYISGSIL 90
           +  +   +   ++ LF +G T            I+   LS  I + T    L YI     
Sbjct: 4   TALLKAALITLSVVLFSLGATSIVAFTSGVTPGIVALGLSAGIPAATAFPSLAYIFHQHS 63

Query: 91  K------ELFISYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQ 141
           K      +L  ++  +   SRID ++GLLN  A   ++    S  E  +++  D D+FK 
Sbjct: 64  KLQDAYLQLEKAHVELQARSRIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKA 123

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH VGD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R 
Sbjct: 124 INDTFGHGVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGMRVAQRIRA 183

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +EN+  + +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV   +
Sbjct: 184 EVENTPFHTTEYQVYPLTISIGVASAPKNETNSQVLSRADRCLYIAKQRGRNCVVFDEE 242


>gi|56460100|ref|YP_155381.1| signal protein [Idiomarina loihiensis L2TR]
 gi|56179110|gb|AAV81832.1| Signaling protein with a ligand-binding sensor domain, PAS, GGDEF
           and EAL domains [Idiomarina loihiensis L2TR]
          Length = 1230

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 9/194 (4%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFF 134
           +SL++   S S + E   + N + +LS  D L+GL N S F    S+L       +++ F
Sbjct: 778 VSLIVA--SFSDITERRHTENELRRLSNTDTLTGLPNRSYFQVSHSNLVRKKVSHTLLLF 835

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAA 193
           D+D FK+IND+ GH +GD+++  ++++L+ +      + RLGG+EF      S       
Sbjct: 836 DLDDFKKINDSLGHEIGDELLCQVAERLMDIGRRQDTLYRLGGDEFGLLIEDSVDINLIG 895

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252
            LAN +   +   +        I I  S GI    H  +    ++ +AD A+Y AK+ G 
Sbjct: 896 DLANQINLKVA--EPYFIEQHEIVIGSSIGIVLYPHDGQTSQELLQKADMAMYHAKQRGG 953

Query: 253 NRVVCFSDIENNTC 266
           N    FS   N   
Sbjct: 954 NCYQFFSQSMNENA 967


>gi|307946856|ref|ZP_07662191.1| diguanylate cyclase [Roseibium sp. TrichSKD4]
 gi|307770520|gb|EFO29746.1| diguanylate cyclase [Roseibium sp. TrichSKD4]
          Length = 351

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 56/189 (29%), Positives = 93/189 (49%), Gaps = 9/189 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDY 138
           S + ++ L  +   I   S  D L+ L N   F  SL    +         +++  DID+
Sbjct: 159 SKNQIQTLQANLETIRHESLTDELTTLNNRKHFDGSLDRAIQNAVETETGFALLMTDIDH 218

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+ ND FGH  GD+V+  ++  +     +     R GGEEFA       +  A  +A+ 
Sbjct: 219 FKKFNDTFGHQTGDQVLRLVALSVKQNVRSNDTACRYGGEEFAIILPTCPKANACTVADK 278

Query: 199 LRKIIENSQ-INISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +R  +++ + +  S+G ++  ITIS GI+     +   ++I RADQALY AK  GR+ V 
Sbjct: 279 IRDAVKSKELVKRSTGQNLGRITISIGISTYQSGDTAESLISRADQALYQAKHDGRDCVR 338

Query: 257 CFSDIENNT 265
              D+  ++
Sbjct: 339 TEDDLAQSS 347


>gi|289548504|ref|YP_003473492.1| diguanylate cyclase with PAS/PAC, CBS and GAF sensors [Thermocrinis
           albus DSM 14484]
 gi|289182121|gb|ADC89365.1| diguanylate cyclase with PAS/PAC, CBS and GAF sensors [Thermocrinis
           albus DSM 14484]
          Length = 822

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 61/182 (33%), Positives = 93/182 (51%), Gaps = 15/182 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDI 136
           Y+S   L E+        +LS  D L+ L N    +            Y++ LS++  D+
Sbjct: 648 YVSNLRLLEIT------KELSIRDPLTNLYNRRFVMEFLERELERAKRYSKPLSVILADL 701

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK IND +GH VGD+ +   +  L  V      VGR GGEEF      + ++ AA+LA
Sbjct: 702 DNFKTINDTYGHHVGDECLQTFAHVLNRVVRGSDVVGRYGGEEFILVLPETDKEGAAMLA 761

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             +R  + +S I  + G  +++T S G+A      E ++T+I  ADQ LY+AK  G++RV
Sbjct: 762 ERIRLAVRSSSIRFTGGC-VYLTASFGVASFPEDGEDVTTLIRVADQRLYIAKSQGKDRV 820

Query: 256 VC 257
           V 
Sbjct: 821 VW 822


>gi|237653310|ref|YP_002889624.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Thauera
           sp. MZ1T]
 gi|237624557|gb|ACR01247.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Thauera
           sp. MZ1T]
          Length = 1093

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 11/182 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           +   +  L  +  RI  L+R D L+GLLN SA+       +     ++++ +++F D+D 
Sbjct: 645 TAQDVTALREAEARIRYLARFDPLTGLLNRSAWQDHAQDVLRHAARHDDRCAVLFLDLDD 704

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK +ND+ GH  GD+++A ++ +L         V R+GG+EF       +  +E A +A 
Sbjct: 705 FKTVNDSLGHAAGDRLLAQVACRLGGCVRAEDLVARIGGDEFVILLSRLAHAEEPARVAE 764

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +   +    + I S P + +  S GIA        I T++  AD A+Y AK+SGRN   
Sbjct: 765 RVLDALAR-PLQIDSQP-LRVGASIGIALYPADGGEIDTLLKHADTAMYEAKESGRNAYR 822

Query: 257 CF 258
            F
Sbjct: 823 FF 824


>gi|152969456|ref|YP_001334565.1| hypothetical protein KPN_00899 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954305|gb|ABR76335.1| hypothetical protein KPN_00899 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 350

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/264 (25%), Positives = 121/264 (45%), Gaps = 28/264 (10%)

Query: 20  ESFSPHTFMIYFSIFFSIFIATVIF---IANIFLFYIGLTPFYGLEYILV---------- 66
            S S + F+ ++++ F+  +  ++    +  ++  + G+T F    ++            
Sbjct: 85  WSLSNYCFIFFWTLPFAWPLLVILMTTGLTALYHHWPGITAFMLPLWVTALLAGIQLHYH 144

Query: 67  -ENLSLVIISITISLLL--GYISGSILKELFISYN-------RISQLSRIDCLSGLLNHS 116
            E   L++ +I I++LL    I      E + ++        R+  ++  D L+G  N  
Sbjct: 145 TEIRFLILWAIFIAILLYGRRILQRWYDEAWDTHQENMQLIQRLESIANQDALTGTANRR 204

Query: 117 AFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFV 172
           A  + L         L+++  D+DYFK+ ND +GH  GD+ ++ ++  L +        V
Sbjct: 205 ALNAYLAAIWQQKTPLALMMIDVDYFKRYNDRYGHQAGDECLSSVAQVLKMAVRAEGDLV 264

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKE 231
            R GGEEF     G S   A  +A  +++ I  + +  ++      +T+S GI       
Sbjct: 265 ARYGGEEFVVVLPGVSLAHATAIAERIQQKIREAGLPHAASAVASEVTVSIGIVASDGTV 324

Query: 232 PISTIIYRADQALYVAKKSGRNRV 255
           PI T+I RAD ALY AK +GRN+ 
Sbjct: 325 PIETLIARADSALYQAKNNGRNQW 348


>gi|312962511|ref|ZP_07777002.1| hypothetical protein PFWH6_4432 [Pseudomonas fluorescens WH6]
 gi|311283438|gb|EFQ62028.1| hypothetical protein PFWH6_4432 [Pseudomonas fluorescens WH6]
          Length = 519

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/186 (36%), Positives = 101/186 (54%), Gaps = 14/186 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIV 132
           I  +LLLG    ++L+E      +++Q ++ D L+GL N  A  + L  +       ++V
Sbjct: 341 IRRALLLG---ATLLQEKIG---KLNQQAQTDALTGLANRRAMQAILSRWQAADKMFAVV 394

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK++ND FGH VGD+ +  ++  +     +     R+GGEEF      SS Q A
Sbjct: 395 SLDIDHFKRVNDTFGHAVGDETLRAIAALIQQNSRSNDLACRVGGEEFVVLLPNSSLQAA 454

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSG 251
           A +A  LR  I  + I+       H+T+S G+A  R   + IS ++ RADQ LY AK+ G
Sbjct: 455 ADVAERLRHSIAAATIDTVG----HVTVSLGVALWRPGGDSISAVLERADQLLYRAKQDG 510

Query: 252 RNRVVC 257
           RNRVV 
Sbjct: 511 RNRVVV 516


>gi|209519183|ref|ZP_03267987.1| diguanylate cyclase [Burkholderia sp. H160]
 gi|209500409|gb|EEA00461.1| diguanylate cyclase [Burkholderia sp. H160]
          Length = 510

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 96/205 (46%), Gaps = 14/205 (6%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYN 126
           + +TI + L  +  S L+    +   + +L+R D L+GL N   F              N
Sbjct: 293 LDVTI-IALALLFSSQLRLRRAAEEELRELARTDGLTGLNNRRTFEEHVNDEWRRAQRNN 351

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAAL 185
             LS++  D+D FK  ND +GHP GD  +  ++  +      P     R GGEEFA    
Sbjct: 352 WPLSLLLIDVDNFKGFNDLYGHPAGDGALIGVARCIEQNMRRPGDTAARFGGEEFAVLLP 411

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQ 242
            +    A  +A  +R  ++  Q    +     +T+S G A   H   I+T   ++  AD+
Sbjct: 412 DTDAAGAQRIAEQIRAAVQALQRGHVASAHHVLTVSVGAAT-AHGALIATSRVLVDAADE 470

Query: 243 ALYVAKKSGRNRVVCF-SDIENNTC 266
           ALY AK +GRNRV+ + +  + +TC
Sbjct: 471 ALYRAKDAGRNRVMVYGATADTDTC 495


>gi|158337063|ref|YP_001518238.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acaryochloris marina MBIC11017]
 gi|158307304|gb|ABW28921.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Acaryochloris marina MBIC11017]
          Length = 1015

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 98/196 (50%), Gaps = 14/196 (7%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK-LSIV 132
           L G+I+   + +L  +  ++   +  D L+GL N S F+  L         + ++  +++
Sbjct: 284 LEGFIT--DISKLKQAETQLRHDAFYDKLTGLPNRSLFMDRLEYCIKRVKRHPDQIFAVL 341

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQE 191
           F D+D FK +ND+ GH  GD+++  ++++L         + RLGG+EF     G     +
Sbjct: 342 FLDLDRFKVVNDSLGHAAGDQLLVEIAERLTACVRESDTLARLGGDEFTVLLEGIKDLSD 401

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250
           A ++   +++ + N   N+ +G  + IT+S G+A      +    +++ AD A+Y AK  
Sbjct: 402 ALLVCGRIQQSL-NCPFNL-NGREVLITVSTGVALSTMGYDDPEQLLHNADAAMYRAKAL 459

Query: 251 GRNRVVCFSDIENNTC 266
           G+ +   F+   ++  
Sbjct: 460 GKAQWEVFTADMHSNA 475


>gi|121535801|ref|ZP_01667602.1| diguanylate cyclase [Thermosinus carboxydivorans Nor1]
 gi|121305633|gb|EAX46574.1| diguanylate cyclase [Thermosinus carboxydivorans Nor1]
          Length = 491

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 81/171 (47%), Gaps = 9/171 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+   +  D L+GL N+  F             Y   LS++  DIDYFK  ND +GH  G
Sbjct: 316 RVELQAITDGLTGLYNYRYFQTLFEREFKRAVRYKRPLSLLMIDIDYFKLYNDTYGHRQG 375

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210
           D +I  ++  +         V R GGEEFA     ++  EA  +A  +R  +      N 
Sbjct: 376 DHIIRTIAKIIRQNCRDVDIVVRYGGEEFAVLFPETTVDEAFKIAERIRMAVAEYPFANK 435

Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            S P   +T+S G+A   +  +  + +I  AD ALY AK++ +NRV  + D
Sbjct: 436 HSQPGGILTVSMGVAGYPYDAQSETELIDHADMALYRAKRTSKNRVCLYRD 486


>gi|325273996|ref|ZP_08140155.1| GGDEF domain-containing protein [Pseudomonas sp. TJI-51]
 gi|324100885|gb|EGB98572.1| GGDEF domain-containing protein [Pseudomonas sp. TJI-51]
          Length = 645

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 60/184 (32%), Positives = 88/184 (47%), Gaps = 11/184 (5%)

Query: 82  LGYISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           L     S+  E       + +    + +D L+GL N +A+   +             L++
Sbjct: 460 LSERVASMEHEALGYREHLEEQRQKALLDPLTGLPNRAAWSERVEREMLEWQAQGGHLAM 519

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK+IND++GH  GDKV+  ++DQL        F+ R GGEEF      ++   
Sbjct: 520 AILDLDHFKRINDSYGHLAGDKVLKIVADQLRKCLRGRDFIARFGGEEFVLLLPQTAPPA 579

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           AA  A  LR  IE    +   G  + IT S G+A     E    ++ RAD ALY AK+ G
Sbjct: 580 AAQAAELLRATIEACPFHFK-GERVVITTSIGLAAFRAGERADQVLKRADTALYRAKELG 638

Query: 252 RNRV 255
           RNRV
Sbjct: 639 RNRV 642


>gi|301383588|ref|ZP_07232006.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059985|ref|ZP_07251526.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           K40]
 gi|302132076|ref|ZP_07258066.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 763

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/271 (25%), Positives = 118/271 (43%), Gaps = 41/271 (15%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN-------------LSLVIISI 76
           Y  +F  +F   V  +    L  + L     L  ++ EN             L L I +I
Sbjct: 185 YSGMFHQMFRYGVSLLLGAGLLTMHLMGMRALRLVIPENAELHIPGTENSQQLGLTIAAI 244

Query: 77  TISLLLGYISGS------------------ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           T+ ++ G IS +                  +L +L  +   + Q++  D L+ L+N   F
Sbjct: 245 TLLIIAGSISAAMADKKLQGKENDLQRVNALLSQLDQARVSLQQVAHYDPLTNLINRRGF 304

Query: 119 -----ISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                   L   + K  L+++F DID+FK+IND+ GH  GD+++  +++++         
Sbjct: 305 NQIFAEKLLEHTHSKGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDV 364

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           V R GG+EF         +EA  LA+ +   ++  +    +G  + +T S GIA      
Sbjct: 365 VARFGGDEFCILLSIPDYEEARHLAHRVMHKMK--EPIALAGRRMVMTTSIGIAVFPRDG 422

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                ++  AD ALY +K +GRNRV  FS  
Sbjct: 423 STCDELLKHADLALYQSKGNGRNRVNFFSPA 453


>gi|262044987|ref|ZP_06018029.1| membrane-associated diguanylate cyclase [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|330006974|ref|ZP_08305822.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
 gi|259037714|gb|EEW38943.1| membrane-associated diguanylate cyclase [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|328535592|gb|EGF62046.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
          Length = 269

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/265 (27%), Positives = 119/265 (44%), Gaps = 20/265 (7%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE 67
            L  W    K +    PH   +  ++   +FI T+ F  NI  F +   P +    I+ E
Sbjct: 1   MLWAWHVVTKAMLLTPPHFNYLVIALLSILFIGTIAFSNNITAFTLHSLPTFLACLIMAE 60

Query: 68  N---------LSLVIISITISLLLGYISGS----ILKELFISYNRISQLSRIDCLSGLLN 114
                       L I  IT+  ++   S +    ++ +L    N ++ LS +D L+GL N
Sbjct: 61  GEQWLRMTYCFMLPIAGITLQNIIQKRSDAFTQGLMDKLMHERNTLNDLSMLDPLTGLYN 120

Query: 115 HSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
                + L +      +   ++  DID+FK  ND++GH +GD+ +  +S  +     +  
Sbjct: 121 RRGLQNRLDTLLALDGDNHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRNAVRSRD 180

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAERC 228
            V R GGEEF      SSE+ A   A  +R+ + + +I      S+  ++TIS G+    
Sbjct: 181 IVARFGGEEFMVLLTNSSEETAWKTAERIRQRVYDLKIPHMFNESVATNVTISIGLTPLI 240

Query: 229 HKEPISTIIYRADQALYVAKKSGRN 253
             + I   + RAD ALY AK  GRN
Sbjct: 241 -NDNIEQALARADGALYEAKNKGRN 264


>gi|254180255|ref|ZP_04886854.1| diguanylate cyclase [Burkholderia pseudomallei 1655]
 gi|184210795|gb|EDU07838.1| diguanylate cyclase [Burkholderia pseudomallei 1655]
          Length = 454

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 10/228 (4%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           ++A  +F    F+   G+              S   +   ++  +    G +L+EL  + 
Sbjct: 228 WLAHAVFAGGFFMLSFGVVQALMTTRSFATVYSQQDLMARLAESMARTEG-VLQELKRTN 286

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
            ++  L+  D L+G  N   FI  + S   +        S++  D+D FK INDN+GH V
Sbjct: 287 QKLEHLATTDPLTGASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFKTINDNYGHQV 346

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+     Q +        + R+GGEEF           A+ +A  +R  I N+   I
Sbjct: 347 GDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRTTIANASFGI 406

Query: 211 SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV 
Sbjct: 407 -DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 453


>gi|310823301|ref|YP_003955659.1| response regulator/ggdef domain-containing protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396373|gb|ADO73832.1| Response regulator/GGDEF domain protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 349

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 59/181 (32%), Positives = 87/181 (48%), Gaps = 11/181 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L  L      + QLS +D L+ L NH  F   L         Y++ L ++  D+D+FK+I
Sbjct: 154 LSTLAAQVMELQQLSVLDGLTQLHNHRYFQERLREEFRCAQRYDDALCLILLDLDFFKEI 213

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GHPVGD V+  ++  L         V R GGEEFA     +    A  +A  + K 
Sbjct: 214 NDRHGHPVGDTVLCEVARILQQSVRETDIVARYGGEEFAVLLPRTHLAGAITVAERVWKG 273

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +      + +  ++ IT S G++   H+       ++  AD+ALY AK+ GRNRV   S 
Sbjct: 274 VAGQP--MGADGALRITASLGVSGFPHRTVLTPEQLLLTADEALYRAKREGRNRVCLHSP 331

Query: 261 I 261
           I
Sbjct: 332 I 332


>gi|322419673|ref|YP_004198896.1| GAF sensor-containing diguanylate cyclase [Geobacter sp. M18]
 gi|320126060|gb|ADW13620.1| diguanylate cyclase with GAF sensor [Geobacter sp. M18]
          Length = 739

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 85/176 (48%), Gaps = 9/176 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
            E+     R  QLS  D L+GL N     S L             L+++F D+D+FK  N
Sbjct: 529 TEVLEESERFEQLSVTDALTGLYNRRFLKSRLEEELNRSIRQGLNLTVIFIDLDFFKNFN 588

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+ +   +D +         V R GGEEF A   G+S+ EA I+A  +R  I
Sbjct: 589 DLCGHLAGDEALKITADIIKASLREMDIVARYGGEEFCAVLPGTSKAEAMIVAERIRSEI 648

Query: 204 ENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           E  +       P + +T S GIA         +T+++ +D ALY AK SGRNR+V 
Sbjct: 649 EKEKFPGEKDIPQMRLTASLGIASFPEDGRTFTTLVHSSDVALYEAKASGRNRIVA 704


>gi|148251790|ref|YP_001236375.1| GGDEF domain-containing protein [Bradyrhizobium sp. BTAi1]
 gi|146403963|gb|ABQ32469.1| putative diguanylate cyclase (GGDEF)domain protein [Bradyrhizobium
           sp. BTAi1]
          Length = 328

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 15/212 (7%)

Query: 64  ILVENL-SLVIISITISLLLGYISGSILKEL---FISYNRISQLSRIDCLSGLLNHSAFI 119
           IL+ENL S +  +   +  L        +EL     S N+  Q +R D L+GL N  A  
Sbjct: 111 ILIENLVSELAQATARAAKLEASFAEKSRELDTIRDSLNKSEQRARTDTLTGLPNRRALE 170

Query: 120 SSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
                         E LSI+  D+D+FK+ NDN+GH VGD+V+  ++  L          
Sbjct: 171 EFFRHAQIESMERDEPLSILLIDVDHFKKFNDNYGHGVGDQVLRLVAKALRERVRDQDLP 230

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAERCHK 230
            R GGEE  A    +  +    +A  +R+ I + Q    S   +   IT+S G+ +    
Sbjct: 231 ARYGGEELIAVLPQTDLEGCHAIAERIRRTIADCQFTRRSTGEVLPQITVSIGVGQFQFG 290

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           E ++ +I R D+ALY+AKK GRNRV+  +++E
Sbjct: 291 ESMADLIDRCDRALYLAKKLGRNRVI--TELE 320


>gi|71909355|ref|YP_286942.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71848976|gb|AAZ48472.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 722

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 11/186 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
              + E   +   I+  +  D L+ L N   F+  L           EKL+++F DID F
Sbjct: 277 ARDISERKKAEETITFQAFHDLLTKLPNRILFLDRLEMAIAQASRREEKLAVMFLDIDRF 336

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K +ND +GH VGD+++   + ++     T   + R GG+EF A     ++  +A ++A  
Sbjct: 337 KLVNDTYGHQVGDQLLREFAARVRRCLRTGDTLARQGGDEFTALLPTLTNRDDANVVAEK 396

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           +    E  +  + +      T S GIA           +I  AD A+Y  K  G+N  V 
Sbjct: 397 ILS--ETRRPFVVAETQFLATTSIGIAIYPDDGTNAQDLIRCADMAMYQVKAQGKNGYVV 454

Query: 258 FSDIEN 263
           F +  +
Sbjct: 455 FQEHMH 460


>gi|189426377|ref|YP_001953554.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
 gi|189422636|gb|ACD97034.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
          Length = 965

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 13/187 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
           G  + +   + + I QL+  D ++GL N +     L          ++ ++I+F D+D F
Sbjct: 510 GRDITDRKTAESTIEQLAYHDPVTGLPNRTLLHDRLQLAINRAERDSQGVAILFLDLDRF 569

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILAN 197
           K IND+ GH +GD+++  + ++L+    +   V RLGG+EF      L +     +++  
Sbjct: 570 KAINDSLGHAMGDQLLRLVGNRLLDCVRSSDTVARLGGDEFVVLISALDNDHAVGSVVMK 629

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            L ++ E  QI       ++ + S GI+           ++  AD A+Y AK++GRN   
Sbjct: 630 ILEQLCEPYQI---DDHEVYTSSSIGISLFPRDGRDAEELLKNADMAMYQAKEAGRNTCH 686

Query: 257 CFSDIEN 263
            FS   N
Sbjct: 687 FFSPELN 693


>gi|331015730|gb|EGH95786.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 763

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/271 (25%), Positives = 118/271 (43%), Gaps = 41/271 (15%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN-------------LSLVIISI 76
           Y  +F  +F   V  +    L  + L     L  ++ EN             L L I +I
Sbjct: 185 YSGMFHQMFRYGVSLLLGAGLLTMHLMGMRALRLVIPENAELHIPGTENSQQLGLTIAAI 244

Query: 77  TISLLLGYISGS------------------ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           T+ ++ G IS +                  +L +L  +   + Q++  D L+ L+N   F
Sbjct: 245 TLLIIAGSISAAMADKKLQGKENDLQRVNALLTQLDQARVSLQQVAHYDPLTNLINRRGF 304

Query: 119 -----ISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                   L   + K  L+++F DID+FK+IND+ GH  GD+++  +++++         
Sbjct: 305 NQIFAEKLLEHTHSKGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDV 364

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           V R GG+EF         +EA  LA+ +  + +  +    +G  + +T S GIA      
Sbjct: 365 VARFGGDEFCILLSIPDYEEARHLAHRV--MYKMKEPIALAGRRMVMTTSIGIAVFPRDG 422

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                ++  AD ALY +K +GRNRV  FS  
Sbjct: 423 STCDELLKHADLALYQSKGNGRNRVNFFSPA 453


>gi|224825964|ref|ZP_03699067.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Lutiella
           nitroferrum 2002]
 gi|224601601|gb|EEG07781.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Lutiella
           nitroferrum 2002]
          Length = 803

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 18/233 (7%)

Query: 39  IATVIF----IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           +AT ++    +  +   Y     F+G E   +       I+  I L LG++    L+   
Sbjct: 306 VATPLWRDGAVIGVLNLYAAAPGFFGAEEQRLAK----AIADKIDLALGHL--DDLERQR 359

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHP 149
            +  R+   +  D L+GL N +     L    +     +L+++  D+D FK IND FGH 
Sbjct: 360 QAEARLLHQATHDPLTGLPNRTRLFHRLEQALQADAADRLTVLMLDLDGFKDINDLFGHS 419

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQI 208
            GD ++  ++++L  +      V R+GG+EF            A      +   +    +
Sbjct: 420 AGDTLLCRIAERLRALCRPADVVARMGGDEFVVLLEQLPDPHTARNAVEQIISAVRR-PV 478

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            +  G  + ++ S G+          T++ +AD ALY AK  GR++   F D 
Sbjct: 479 PLPDG-EVSVSTSIGMVTGSAGVSADTLLRQADIALYRAKSLGRDQYCLFDDE 530


>gi|218886625|ref|YP_002435946.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757579|gb|ACL08478.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 896

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + EL    ++I   +  D L+GL N +     LG         + K++++  D+D FKQ
Sbjct: 443 DITELKAKESQIQHQAHHDALTGLPNRALLRDRLGMAINGARREDRKVAVLSVDLDNFKQ 502

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           +ND+ GH VGD  +   ++Q+  +      + R+GG+EF         E++AA +A  L 
Sbjct: 503 VNDSLGHMVGDIYLQQAAEQMRQMVRPQDTLARVGGDEFVVVLQDVEGERDAAQVAERLL 562

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
                +         + +  S GIA      +   T++  AD A+  AK+ G+ R   F+
Sbjct: 563 ARF--TDPVRVQEHELFVGASVGIALFPDDGDDPDTLVRNADIAMSRAKEQGKRRYHLFT 620

Query: 260 DIENNTC 266
              N+  
Sbjct: 621 PAMNDRA 627


>gi|26988144|ref|NP_743569.1| GGDEF domain-containing protein [Pseudomonas putida KT2440]
 gi|24982876|gb|AAN67033.1|AE016332_3 GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 493

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 55/203 (27%), Positives = 99/203 (48%), Gaps = 14/203 (6%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI- 119
           + + L  NL+   I   I+L++  +  ++++    S      L+ +D L+GL N  +F  
Sbjct: 292 IRHALYLNLA---ICTMITLVVLALVHAMVRRHQAST---EALATLDSLTGLYNRRSFDL 345

Query: 120 ------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                       +  L  +  D+D+FK +NDN GH  GD+V+   ++ L         + 
Sbjct: 346 LAAQALREARRDSSPLVALLIDLDHFKALNDNHGHLAGDEVLRQFANVLQGSLRQSDILC 405

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEF      +  ++A  +A  +R+  E    +  + P + +T S G++     + +
Sbjct: 406 RWGGEEFIVLLREAEGRQAIEVAEKIRRRTEQLTFSYDNQP-LRLTTSIGLSSLQPGDTL 464

Query: 234 STIIYRADQALYVAKKSGRNRVV 256
             ++ RAD+ALY AK++GRNRV 
Sbjct: 465 HALLTRADRALYRAKQAGRNRVC 487


>gi|291613862|ref|YP_003524019.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291583974|gb|ADE11632.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 923

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 94/209 (44%), Gaps = 11/209 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  + +S+  +      ++ YIS      E   +   I  L+  D L+GL N +     L
Sbjct: 454 IYPKWMSITAVRDEHGKVVNYISIARDTTEQTEAEKNIHFLAYYDVLTGLPNRTLLRDRL 513

Query: 123 GSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
           G           + S++F D+D FK IND+ GH VGD+++  ++ ++         V RL
Sbjct: 514 GQMIAVAHRDKHQFSLIFLDLDRFKYINDSMGHSVGDRLLQSVALRIQDCVREGDTVARL 573

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPIS 234
           GG+EF      + E  A+++A  L  +I  +      G  I    S GI+    + +   
Sbjct: 574 GGDEFIVLLREAGESAASVVAQKL--LIALATPYDLDGQVISTQASIGISIYPDQAQDAD 631

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T+I  AD A+Y AK+ GRN    F    N
Sbjct: 632 TLIKNADMAMYRAKEEGRNNFQFFVPEMN 660


>gi|269926824|ref|YP_003323447.1| diguanylate cyclase with GAF sensor [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790484|gb|ACZ42625.1| diguanylate cyclase with GAF sensor [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 563

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/176 (37%), Positives = 97/176 (55%), Gaps = 8/176 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHP 149
           Y ++S+ +  D LSG LNH AF+  +    E+       LSI+FFD+D+FKQ+ND FGH 
Sbjct: 379 YRQLSEKASRDPLSGFLNHRAFVERVAEEIERSRRLYTGLSILFFDLDHFKQVNDTFGHE 438

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VG+KV+  +S        +   +GR GGEEF A   G+S  ++   A  LR  I   Q+ 
Sbjct: 439 VGNKVLKEMSRVARQTLRSIDVLGRFGGEEFEAILPGASIDDSKAAAERLRSAISGHQVV 498

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +  G +I + +S G A           +I  AD ALY AK+ GRN+VV ++D+  +
Sbjct: 499 LEDGRTITLQVSVGAATYPFDGATPEELIRNADAALYEAKRRGRNKVVHYADMRQD 554


>gi|213971401|ref|ZP_03399515.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           T1]
 gi|213923844|gb|EEB57425.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           T1]
          Length = 756

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/271 (25%), Positives = 118/271 (43%), Gaps = 41/271 (15%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN-------------LSLVIISI 76
           Y  +F  +F   V  +    L  + L     L  ++ EN             L L I +I
Sbjct: 178 YSGMFHQMFRYGVSLLLGAGLLTMHLMGMRALRLVIPENAELHIPGTENSQQLGLTIAAI 237

Query: 77  TISLLLGYISGS------------------ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           T+ ++ G IS +                  +L +L  +   + Q++  D L+ L+N   F
Sbjct: 238 TLLIIAGSISAAMADKKLQGKENDLQRVNALLSQLDQARVSLQQVAHYDPLTNLINRRGF 297

Query: 119 -----ISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                   L   + K  L+++F DID+FK+IND+ GH  GD+++  +++++         
Sbjct: 298 NQIFAEKLLEHTHSKGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDV 357

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           V R GG+EF         +EA  LA+ +   ++  +    +G  + +T S GIA      
Sbjct: 358 VARFGGDEFCILLSIPDYEEARHLAHRVMHKMK--EPIALAGRRMVMTTSIGIAVFPRDG 415

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                ++  AD ALY +K +GRNRV  FS  
Sbjct: 416 STCDELLKHADLALYQSKGNGRNRVNFFSPA 446


>gi|218530666|ref|YP_002421482.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
 gi|218522969|gb|ACK83554.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
          Length = 508

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 12/208 (5%)

Query: 61  LEYILVENLSLVIISITI----SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           +E    E  +++ +++ +    ++LL  + G  L+        +++L++ D L+GL N  
Sbjct: 298 IEAEWRETAAVIGLAVLVLCGSTVLLSLLFGRELRRSAAMQAELARLAQTDVLTGLPNRR 357

Query: 117 AFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGT 168
            F +               L+++  D D+FK+ ND +GH VGD V+  L+D L   V   
Sbjct: 358 HFETVFAQAWGTSRRTGAPLALILIDADHFKRYNDRYGHAVGDAVLRGLADSLSASVRRP 417

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
              V R+GGEEFA     +    A  ++  + + I    +         +T+S G+A   
Sbjct: 418 GDLVARVGGEEFAVLLPATDRDGAMRVSETIHRAITGFAMPSVGIGPGTVTVSLGLAVDS 477

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256
                  +  RAD ALY AK  GRN+  
Sbjct: 478 GGGTAEDLYRRADAALYEAKAGGRNQTR 505


>gi|189423872|ref|YP_001951049.1| diguanylate cyclase [Geobacter lovleyi SZ]
 gi|189420131|gb|ACD94529.1| diguanylate cyclase [Geobacter lovleyi SZ]
          Length = 346

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 91/177 (51%), Gaps = 8/177 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           S +IL         +    RID L+ L N + F   L         YNE  S++  D+DY
Sbjct: 154 SQAILATQREQIETLKTAVRIDGLTQLANRAYFDEKLLEMILLHQRYNEPFSLMMIDVDY 213

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND+ GH  GD+++  ++ ++        F+ R GG+EFA   + +S Q A +LA  
Sbjct: 214 FKNINDSHGHQAGDRILKGVAFKIKASLRESDFLARFGGDEFALILIKASLQPATVLAEK 273

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   I  S+  I  G    +T+S G+AE    +   +++ RAD+ALY+ K+ GRN V
Sbjct: 274 ICTNIRESRF-ILDGTEFKVTLSIGVAEVHADDTPESLLQRADRALYLVKERGRNGV 329


>gi|309779657|ref|ZP_07674416.1| ggdef domain protein [Ralstonia sp. 5_7_47FAA]
 gi|308921598|gb|EFP67236.1| ggdef domain protein [Ralstonia sp. 5_7_47FAA]
          Length = 459

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 19/235 (8%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
           +A  + +A+  L   G    Y L +     LS+V  ++ +S+L+  I+  + + L  + +
Sbjct: 227 VALAVGLADSLLTLHG-GARYTLGWYAARLLSVVSSAVVLSMLIADIT-RLYRALMAANH 284

Query: 99  RISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ + S +D L+ + N  AF               + LS++  DID+FKQIND +GH  G
Sbjct: 285 RLERQSLLDGLTQVGNRQAFDRCWAAESKRARRTGQPLSVLMVDIDHFKQINDTYGHGRG 344

Query: 152 DKVIAFLSDQLVVV--FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           D  +  +++ L  V        V R GGEEF      +    A ++A  +R+ +E + + 
Sbjct: 345 DACLVEVANILSRVAGKRPTDLVARYGGEEFVVLLADTERSRAKVIAEQVRRAVEQAALP 404

Query: 210 ISSGPSIHITISAGIAERCHKEP-------ISTIIYRADQALYVAKKSGRNRVVC 257
             S   + +T+S G+A               S  + +AD ALY AK++GRN V+ 
Sbjct: 405 APSVRGV-VTVSIGVAAYAPSADHAPVADATSEALMQADMALYDAKRAGRNAVMV 458


>gi|220933869|ref|YP_002512768.1| putative diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995179|gb|ACL71781.1| putative diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 306

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 100/193 (51%), Gaps = 13/193 (6%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLG 123
           L  +   +S+L+  +  S+L      Y +  + ++ D L+GL N +A         ++L 
Sbjct: 116 LTEVENLLSVLIYPLRNSLL------YRQAVEAAQTDTLTGLYNRAALDHLLPRELAALR 169

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
              + L+++  DID+FK+IND  GH  GD+V+   +D L         + R GGEEF   
Sbjct: 170 RGQQHLALLVVDIDHFKRINDTLGHSAGDQVLKAAADCLQEATRESDMLFRYGGEEFVML 229

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
               S ++A +    +R+++ N +   S+ P   +T S G+A     +   ++  RADQA
Sbjct: 230 MSTESPEDALLAGERIRRVLRNCEALQSAAPGFTLTASIGVAMARPTDSAFSLFDRADQA 289

Query: 244 LYVAKKSGRNRVV 256
           +Y AK++GR+RVV
Sbjct: 290 MYTAKQAGRDRVV 302


>gi|167615088|ref|ZP_02383723.1| GGDEF domain protein [Burkholderia thailandensis Bt4]
 gi|257141662|ref|ZP_05589924.1| GGDEF domain-containing protein [Burkholderia thailandensis E264]
          Length = 487

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 94/204 (46%), Gaps = 13/204 (6%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYN---RISQLSRIDCLSGLLNHSAFISSL 122
           +    LV + +   +++   +  + +EL    +    + +L+R D L+GL N  AF  +L
Sbjct: 279 IRAQRLVALMLVFGVVIVGGTALLSRELRWRRHAELHLQRLARTDALTGLGNRRAFDENL 338

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGR 174
                        LS++F DID FK  ND++GH  GD V+  +   L   V      V R
Sbjct: 339 RSEWARALRTGRPLSLLFVDIDQFKAYNDHYGHQAGDDVLREVGRCLALNVRRAADDVSR 398

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--P 232
            GGEEF         + AA +A  +R+ + +  I     P   +T+S G+          
Sbjct: 399 YGGEEFVITLPDIDAKSAAAIAEHIRRAVYDLDIEHVRSPYARVTVSIGLVTSHEHAAHS 458

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
            +T++  AD ALY AK +GRNRV 
Sbjct: 459 DTTLVKMADAALYQAKSTGRNRVC 482


>gi|71906348|ref|YP_283935.1| response regulator receiver modulated diguanylate cyclase
           [Dechloromonas aromatica RCB]
 gi|71845969|gb|AAZ45465.1| response regulator receiver modulated diguanylate cyclase
           [Dechloromonas aromatica RCB]
          Length = 322

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 12/210 (5%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
             G +  L + +S V++   +  +L   +    +E+   + ++ +++ +D L+G+ N   
Sbjct: 113 LAGADDFLYKPVSEVVLLAKVRAMLRIATRQ--QEICAVHRQLKEIAILDSLTGIPNRRH 170

Query: 118 FISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTP 169
           F  +L +  +        LSIV  D+D+FKQ ND +GH  GD  +  ++  L    F   
Sbjct: 171 FDDTLAAEWKRCIRTETPLSIVISDVDFFKQFNDIYGHQAGDVCLKAVASSLSESLFRVE 230

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
             V R GGEEF A   G+    A  +A  +R+   +  I    G    I+ S G+A  C 
Sbjct: 231 DTVARYGGEEFVAILPGTDANGAYAVAERMRQSARDLCIPHERGIDGRISCSFGVASTCP 290

Query: 230 KEP--ISTIIYRADQALYVAKKSGRNRVVC 257
                   ++  AD  LY AK++GRNRV  
Sbjct: 291 SADKAPQQLLRTADAGLYAAKRAGRNRVAF 320


>gi|307824674|ref|ZP_07654898.1| diguanylate cyclase/phosphodiesterase [Methylobacter tundripaludum
           SV96]
 gi|307734328|gb|EFO05181.1| diguanylate cyclase/phosphodiesterase [Methylobacter tundripaludum
           SV96]
          Length = 734

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 99/221 (44%), Gaps = 15/221 (6%)

Query: 54  GLTPFYGLEYILVENLSL----VIISITISLLLGYISGSILKELFISYNRISQLSRIDCL 109
            L    G+ Y    NLS     VI +I   +++   S  +L    +    +   +  D L
Sbjct: 256 NLAGLLGVAYAAENNLSAQEASVIRAILAVMVMVVGSSKVLSRTLL---ELEYYAVHDPL 312

Query: 110 SGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GL N   F   L         +  + S++  D+D FK IND++GHP GD  +  ++D L
Sbjct: 313 TGLHNRRQFNDILHYEIGRSERHKHEFSVLMLDLDDFKDINDSYGHPTGDTALCAIADAL 372

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
           +          R+GG+EFA     +  + A ++A ++ + +    I  S G   H+T+S 
Sbjct: 373 LEHTRNGDLCARIGGDEFAIILTETGPEGARVVAENVSRALREMAITSSQGNRFHLTVSI 432

Query: 223 GIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           G+       + I T++   D A+Y AK  G++ V  F   E
Sbjct: 433 GVTSYPVDGQTIDTLLEGVDAAMYKAKDMGKDSVCTFDATE 473


>gi|192359360|ref|YP_001982537.1| sensory box protein [Cellvibrio japonicus Ueda107]
 gi|190685525|gb|ACE83203.1| sensory box protein [Cellvibrio japonicus Ueda107]
          Length = 844

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 16/197 (8%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFF 134
           +  I    + E   +  ++  ++  D L+GL N    +  L     +        +++F 
Sbjct: 382 VALIVSVDITERKNAQAKMEFMAHHDALTGLPNRVQLVERLEHELRRAERHGYYGAVLFI 441

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA------LGSS 188
           D+D FK IND+ GHPVGDKV+  ++ +L         V RL G+EF          + ++
Sbjct: 442 DLDQFKNINDSLGHPVGDKVLEVVATRLQQSVREEDLVARLSGDEFVVVLTVLDQNMETA 501

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVA 247
              A  ++  +R II  SQ  +     + +T S G+         +  ++  AD A+Y  
Sbjct: 502 ALRAGEISEKIRSII--SQPYVYDSMELRVTCSVGVVVYPDKNNSVHELLRYADTAMYQV 559

Query: 248 KKSGRNRVVCFSDIENN 264
           K+ GR+ +  F++   +
Sbjct: 560 KEKGRDSIEFFNEEMAD 576


>gi|313682865|ref|YP_004060603.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sulfuricurvum kujiense DSM 16994]
 gi|313155725|gb|ADR34403.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sulfuricurvum kujiense DSM 16994]
          Length = 673

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 113/253 (44%), Gaps = 13/253 (5%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL---- 81
           +F+I+F +F  I  A + +  N  L          ++ I+  N     IS+   +L    
Sbjct: 177 SFIIFFILFTVIIFAVLYYKLNSLLVQPIKQFILMIQDIISNNDMAKRISLKTKILEVKN 236

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           +      +L  +   Y ++ +LS  D L+GL N   F   L         +  K +++  
Sbjct: 237 IENYFNKMLDSIQDYYEKLQELSDRDYLTGLYNRRKFEEFLSYEVKRSLRHRHKFTVLMI 296

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND +GH  GD V+  +++           + R+GG+EFA     +  +    
Sbjct: 297 DLDNFKYINDTYGHASGDLVLKEVTEIFGSKLRNADILARIGGDEFAVILPETPYENGYA 356

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRN 253
           +   LR  +E++ I++     + +T S GIAE     E I +++  +D A+Y AK++G+N
Sbjct: 357 VVEKLRASLESTPISLMFDQ-VSLTASFGIAEYPEQGENIESLLTGSDLAMYKAKRAGKN 415

Query: 254 RVVCFSDIENNTC 266
            +      +    
Sbjct: 416 TIARADQSDQEMA 428


>gi|302188967|ref|ZP_07265640.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 695

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 11/184 (5%)

Query: 82  LGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSI 131
           L     S+ +E            Q + ID L+GL N +A+   L     +       L +
Sbjct: 510 LAARVASMEQEALGFRTHLEEQRQKALIDPLTGLPNRAAWGERLEQEMARWQEEKNSLLV 569

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK+IND +GH  GDKV+  +++ L        F+ R GGEEF      +    
Sbjct: 570 CILDLDHFKRINDGYGHLAGDKVLKIVANVLSKRLRADDFMARFGGEEFVMLLPATPPAT 629

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              L ++LR  +E+   +   G  + IT+S G+      E   T I RADQALY AK++G
Sbjct: 630 GLTLLDELRAAVESCPFHFK-GERVTITVSIGLTAFRPSEKSDTAIKRADQALYKAKENG 688

Query: 252 RNRV 255
           RNR+
Sbjct: 689 RNRI 692


>gi|294141998|ref|YP_003557976.1| sensory box protein [Shewanella violacea DSS12]
 gi|293328467|dbj|BAJ03198.1| sensory box protein [Shewanella violacea DSS12]
          Length = 1018

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + E   + + I + +  D L+GL N    +  LG          + L+++F D+DYFK
Sbjct: 565 SDITEKKQAEHIIWKQANYDPLTGLPNRRMLLEYLGTELLKSDRNKQHLALMFLDLDYFK 624

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDL 199
           ++ND  GH VGD ++   + +L         V RLGG+EF        + +    +A ++
Sbjct: 625 EVNDTLGHDVGDLLLVETAKRLKSCIRESDVVARLGGDEFTLVLSAIDDHKGVDRVAANI 684

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
              +     N+ +  +  I+ S GI         I +++  ADQA+Y AK  GRNR   F
Sbjct: 685 LTRLSE-PFNLGNDTAF-ISASIGITLYPDDASSIESLLKHADQAMYAAKDLGRNRFHYF 742

Query: 259 SDIENNTC 266
           +       
Sbjct: 743 TASMQEEA 750


>gi|238764807|ref|ZP_04625749.1| hypothetical protein ykris0001_29190 [Yersinia kristensenii ATCC
           33638]
 gi|238697005|gb|EEP89780.1| hypothetical protein ykris0001_29190 [Yersinia kristensenii ATCC
           33638]
          Length = 415

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 60/186 (32%), Positives = 87/186 (46%), Gaps = 15/186 (8%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLS 130
           I L+L  I    + E       +   +  D L+ L N   F        +    Y +  S
Sbjct: 234 IRLMLCIIH--DITEQKRLEQALEYAALKDPLTDLGNRRQFFPLVEHAHAQSQRYGQHFS 291

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D+FK IND  GH  GD+V+ FL+  L  +      V R GGEEF      ++  
Sbjct: 292 LILLDVDHFKSINDQLGHHKGDEVLIFLARTLESIIRECDIVFRWGGEEFTILLPSTNLD 351

Query: 191 EAAILANDLRKIIENS-QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            A  LA  +R+ IE   Q N+       +T+S G+A+    E   ++  R D+ALY AK 
Sbjct: 352 GALQLAESIRETIEMICQPNLP-----QLTVSIGVAQHQVGEDTDSLFKRMDEALYRAKA 406

Query: 250 SGRNRV 255
           SGRNRV
Sbjct: 407 SGRNRV 412


>gi|194364972|ref|YP_002027582.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
 gi|194347776|gb|ACF50899.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
          Length = 471

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 8/181 (4%)

Query: 87  GSILKELFISYNRISQL-SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
            +I   + + + RI +L +  D L+ LLN           I          S++  D+D+
Sbjct: 277 AAIRTLMTLLFERIGELDAGSDALTNLLNRRFLPTVLRREIELATRNRTPFSLLLLDLDH 336

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND  GH  GD+ +  ++  L  +     ++ R GGEEF    + +SE +AA++A  
Sbjct: 337 FKAINDGHGHDAGDRALQHVAGVLGQLTRGSDYLFRYGGEEFVVVLVAASESQAAVIAES 396

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           LR+ I  S + +++G  + +T S G+A          ++ RAD A+Y AK+SGRNRVV  
Sbjct: 397 LRRQIAKSPVPLANGQVLSLTASIGVAGHDGHPDYERLMARADAAMYEAKRSGRNRVVVA 456

Query: 259 S 259
           S
Sbjct: 457 S 457


>gi|149375602|ref|ZP_01893371.1| response regulator receiver domain protein (CheY-like)
           [Marinobacter algicola DG893]
 gi|149360004|gb|EDM48459.1| response regulator receiver domain protein (CheY-like)
           [Marinobacter algicola DG893]
          Length = 588

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 58/181 (32%), Positives = 94/181 (51%), Gaps = 11/181 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           +EL  +  ++  +S  D L+G+ N   F   L         +   LS+V  DIDYFK++N
Sbjct: 399 EELEQANEQLKAVSITDGLTGVANRRQFDEKLAAEWQRALRHGHPLSLVLLDIDYFKRVN 458

Query: 144 DNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DNFGH  GD  +  ++      +  +   + R GGEEF+     + E  AA +A  LR  
Sbjct: 459 DNFGHLAGDDCLVSVAWVCASEIQRSGDLLARYGGEEFSVLLPATPEAGAASVAERLRVA 518

Query: 203 IENSQINISSGPS-IHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  + + +    S +++++SAG+A          S +I RAD+ALY AK +GRN+V+ F 
Sbjct: 519 VAGTSVYVGDHVSPLNLSVSAGVATILPEAGSRPSELISRADEALYAAKGAGRNQVMVFR 578

Query: 260 D 260
           +
Sbjct: 579 E 579


>gi|190892067|ref|YP_001978609.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190697346|gb|ACE91431.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 355

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 94/183 (51%), Gaps = 8/183 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKL-----SIVFFDIDYFKQIN 143
           + ++    +   +++  D L+ L N  AF   L + +N        +++  DID FK+IN
Sbjct: 162 MDQVRKELDEYKRIANTDSLTRLSNRRAFDDRLAAVFNNPGMRPVTALLLADIDNFKKIN 221

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHPVGDK++A ++  +       +FV R GGEEFA    G++ +E   +A  +R+ +
Sbjct: 222 DTYGHPVGDKILATVASVIRSNVRRDVFVARAGGEEFALIIEGNTAEEVTAIAERIRRTL 281

Query: 204 ENSQINISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E +    S     +  IT+S GI    + E    +  RAD ALY AK +GRN +V + D 
Sbjct: 282 ETTPFKNSRTRVNYGPITVSIGICMASNAEDAGELYSRADIALYGAKDAGRNCIVLYQDG 341

Query: 262 ENN 264
              
Sbjct: 342 MQK 344


>gi|167576912|ref|ZP_02369786.1| GGDEF domain protein [Burkholderia thailandensis TXDOH]
          Length = 487

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 94/204 (46%), Gaps = 13/204 (6%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYN---RISQLSRIDCLSGLLNHSAFISSL 122
           +    LV + +   +++   +  + +EL    +    + +L+R D L+GL N  AF  +L
Sbjct: 279 IRAQRLVALMLVFGVVIVGGTALLSRELRWRRHAELHLQRLARTDALTGLGNRRAFDENL 338

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGR 174
                        LS++F DID FK  ND++GH  GD V+  +   L   V      V R
Sbjct: 339 RSEWARALRTGRPLSLLFVDIDQFKAYNDHYGHQAGDDVLREVGRCLALNVRRAADDVSR 398

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--P 232
            GGEEF         + AA +A  +R+ + +  I     P   +T+S G+          
Sbjct: 399 YGGEEFVITLPDIDAKSAAAIAEHIRRAVYDLDIEHVRSPYARVTVSIGLVTSHEHAAHS 458

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
            +T++  AD ALY AK +GRNRV 
Sbjct: 459 DTTLVKMADAALYQAKSTGRNRVC 482


>gi|163736853|ref|ZP_02144271.1| glutamyl-tRNA synthetase [Phaeobacter gallaeciensis BS107]
 gi|161389457|gb|EDQ13808.1| glutamyl-tRNA synthetase [Phaeobacter gallaeciensis BS107]
          Length = 511

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 8/170 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFG 147
              + +   S  D L+G+ N   F+  L            +L ++ FD D FK  ND  G
Sbjct: 325 RLRDELHDQSTRDPLTGVYNRRYFLGELRNAVALADRRASQLGVLSFDADRFKTFNDTHG 384

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  + D L  +F       R+GGEEFA     + +++   +   LR  IE+  
Sbjct: 385 HDAGDMVLRAIGDTLKELFRNGEVCCRMGGEEFAVFLPDTDKEQTMEVGEALRAAIEDIT 444

Query: 208 INISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256
           +   SG    +TIS G+A       +   +++ AD+ALY AK +GRN VV
Sbjct: 445 LRYGSGTLPRVTISIGVASYPEDGLLPQDLMHAADRALYAAKDAGRNCVV 494


>gi|327395332|dbj|BAK12754.1| response regulator PleD [Pantoea ananatis AJ13355]
          Length = 525

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 69/235 (29%), Positives = 107/235 (45%), Gaps = 16/235 (6%)

Query: 35  FSIFIATVIFIANI--FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE 92
           F   +A ++  A    FL      P   L  ++ +  S     +  S+   Y     L+E
Sbjct: 283 FWFILAVIVLTATCMAFLATRISYPLEKLAGMVRDGGSDASPELLSSVNTWYNEADRLRE 342

Query: 93  LFISYNR--------ISQLSRIDCLSGLLNHSAF-ISSLGSYNEKL-SIVFFDIDYFKQI 142
               + R        ++  +  D L+GL N   F I +     E + S +  DID+FK+I
Sbjct: 343 AVQQHRRAVAGHVADLNDKAMTDPLTGLNNRRGFYIQAAQHSEEPVQSAIAIDIDHFKKI 402

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH  GD+V+  L+  L     T   + R GGEEF     G++  +AA +A  +R+ 
Sbjct: 403 NDRFGHDAGDEVLVCLAGLLRKRCRTLDVISRFGGEEFILLLPGTALNDAAAMAERIREA 462

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  +     S     +T+S G+A     E    ++ RAD+ALY AK  GRNRV+ 
Sbjct: 463 VSKTSFPFISA----MTVSLGVATLSETEDKDALLRRADEALYAAKGDGRNRVMI 513


>gi|213968212|ref|ZP_03396357.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
 gi|301383782|ref|ZP_07232200.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato Max13]
 gi|302060775|ref|ZP_07252316.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato K40]
 gi|302131874|ref|ZP_07257864.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213927192|gb|EEB60742.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
          Length = 730

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 101/213 (47%), Gaps = 19/213 (8%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G   +L  ++  + ++ T  LL+   +   + +L  +  +I  L+  D L+GL N +  +
Sbjct: 246 GAPLVLDVSVEFITLNNTACLLM---NARDIGQLKSAQAQIQHLAYHDPLTGLPNRALLM 302

Query: 120 SSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L          N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         V
Sbjct: 303 DRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSVIAARLEASVRQEDTV 362

Query: 173 GRLGGEEFAAAALGSS------EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
            RLGG+EF     G          +  +LA++LR ++         G  + +T S GI  
Sbjct: 363 ARLGGDEFVVLICGLDGSLEHVTHQVRVLADNLRVLLAEPMF--LDGHRLQVTPSVGIVL 420

Query: 227 RCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
                   + ++ RAD ALY AK SGRN    F
Sbjct: 421 IPDDGLTPADLLKRADIALYRAKDSGRNASQFF 453


>gi|171849031|pdb|3BRE|A Chain A, Crystal Structure Of P.Aeruginosa Pa3702
 gi|171849032|pdb|3BRE|B Chain B, Crystal Structure Of P.Aeruginosa Pa3702
          Length = 358

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 88/177 (49%), Gaps = 12/177 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+GL N   F   L            +LS++  D+DYFK  N
Sbjct: 158 QQLLETNLVLQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYN 217

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD+ +  ++  +      +     R GGEEFA    G+S   A +LA  +R+ 
Sbjct: 218 DTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRT 277

Query: 203 IENSQINISS-GPSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRV 255
           +E+ QI+     P  H+T+S G++        +    +I  ADQALY AK +GRN+V
Sbjct: 278 VESLQISHDQPRPGSHLTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGRNQV 334


>gi|83310444|ref|YP_420708.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945285|dbj|BAE50149.1| Response regulator [Magnetospirillum magneticum AMB-1]
          Length = 498

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 15/201 (7%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------- 123
           L+++++    L  Y++    +E       + + +  D L+G+ N    +S          
Sbjct: 304 LLLVALATLGLRSYLTTVRQRE------ELRRQADTDPLTGVPNRRHLMSVAEHELARTL 357

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            Y   L++   DID+FK IND +GHP GD+VI  L+  +          GRLGGEEFAA 
Sbjct: 358 RYGGALALFMVDIDHFKAINDTWGHPTGDRVIQVLAAAMAASAREQDTAGRLGGEEFAAV 417

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAGIAERCHKE-PISTIIYRAD 241
              +  + AAI+A  LR+ +E     +   G  +  T+S G+A     +  +  I+ RAD
Sbjct: 418 LPETDLEGAAIMAERLREAVEAITSALDDQGQPVRFTVSIGVAAIQLGDGSVEDILGRAD 477

Query: 242 QALYVAKKSGRNRVVCFSDIE 262
           +ALY AK  GRNRV   +  E
Sbjct: 478 RALYAAKHGGRNRVEMAATAE 498


>gi|327398451|ref|YP_004339320.1| diguanylate cyclase [Hippea maritima DSM 10411]
 gi|327181080|gb|AEA33261.1| diguanylate cyclase [Hippea maritima DSM 10411]
          Length = 174

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 9/167 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ + +  D L+GL N                 Y+  LS++  DID+FK IND +GH +G
Sbjct: 9   QLHEEAVRDPLTGLFNRRYMNLLAEIEFKKTKRYSHPLSVLMIDIDHFKNINDKYGHKLG 68

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++ ++     +     R GGEEF      ++++ A ILA  +R  I  + I + 
Sbjct: 69  DLVLKHVAHEIKNHIRSSDIPIRYGGEEFVIILPNTTKESAFILAERIRNHIAATPIFV- 127

Query: 212 SGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
            G  I  T+S G +      E    ++  +D+ +Y+AK+SGRNR + 
Sbjct: 128 DGMEIRCTVSIGASSMEDCPETFEELVNNSDKKMYLAKQSGRNRTII 174


>gi|315644133|ref|ZP_07897303.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus vortex V453]
 gi|315280508|gb|EFU43797.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus vortex V453]
          Length = 331

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 85/178 (47%), Gaps = 12/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
            EL      + +LS  D L+GL N   F   L              S+   DIDYFK++N
Sbjct: 152 TELMEINAVLVELSNTDKLTGLKNRRFFQEQLEEQLRLYNQSGRPFSLFLIDIDYFKRVN 211

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGD+V+  ++  L         V R GGEEF     G    EA  +A   R+ +
Sbjct: 212 DTWGHAVGDEVLVDVAGILKSCAREGDVVARYGGEEFVMILPGLDVAEAREIAEQFRRAV 271

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            ++     S     ITIS G+     ++  + ++ +ADQALY +K++GRN+V    D+
Sbjct: 272 NDAIWTTGS-----ITISIGMITATPEDHEAALLQKADQALYASKQNGRNQVTHHVDL 324


>gi|207739701|ref|YP_002258094.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           IPO1609]
 gi|206593083|emb|CAQ59989.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           IPO1609]
          Length = 460

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 102/234 (43%), Gaps = 20/234 (8%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           + +F+A      +I+  +     + G+         LV++   ++L + Y+    L+   
Sbjct: 236 YPLFVAVGTATDDIYDNWKARAWWIGV---------LVVLFNVVTLAMAYLFAQHLERRI 286

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
               R ++L+  D L+GL N  A    L           + LS++  D+D+FK  ND +G
Sbjct: 287 EEQRRHAELAATDALTGLANRRALDERLDAEWRRAARERQPLSVLMIDVDHFKAYNDQYG 346

Query: 148 HPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           HP GD  +  ++  +            R GGEEF     GS    A ++A  +R  I+  
Sbjct: 347 HPDGDVALQAVARCIQANLRRPGDLAARYGGEEFCVVLPGSDLGSANVVAETIRHAIQAL 406

Query: 207 QINISSGPSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRVVC 257
            I  +   +  +T+S G A       ++  +T+   AD  LY AK SGRNR V 
Sbjct: 407 DIPHARSDAAVLTVSIGAASGTPASGEQRTATLTKAADAQLYRAKTSGRNRTVA 460


>gi|167562304|ref|ZP_02355220.1| GGDEF domain protein [Burkholderia oklahomensis EO147]
          Length = 454

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 114/248 (45%), Gaps = 19/248 (7%)

Query: 28  MIYFSIFFSIFIATVIFIANIFL-FYIGLTPFYGLEYILVENLSLVIISITI---SLLLG 83
           +++F++    FI    +    +L   I  + F+ L + +V+ L       T+     L+ 
Sbjct: 207 VMWFALSSVAFILGKPWNHMWWLAHAIFASGFFLLSFGVVQALMTSRSFSTVYSQQDLMA 266

Query: 84  YISGSI------LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LS 130
            ++ S+      L+EL  +  ++  L+  D L+G  N   FI  + +   +        S
Sbjct: 267 RLAESMARTEGALQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQAEIARAKRDGTAFS 326

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D FK INDN+GH VGD V+     Q +        + R+GGEEF          
Sbjct: 327 LLALDLDNFKTINDNYGHQVGDVVLRNFVRQCLTAIRPYDHIARVGGEEFMVLLPRMLAD 386

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
            A+ +A  +R  I N+   I  G    +T+S G+++     + +  I+  AD+ LY AK 
Sbjct: 387 AASGIAERVRTSIANASFGI-DGKHTPVTVSIGVSQYGRDGDTVDEILSVADKLLYRAKH 445

Query: 250 SGRNRVVC 257
            GRNRVV 
Sbjct: 446 EGRNRVVA 453


>gi|119472850|ref|ZP_01614757.1| putative orphan protein; putative conserved domain [Alteromonadales
           bacterium TW-7]
 gi|119444682|gb|EAW25989.1| putative orphan protein; putative conserved domain [Alteromonadales
           bacterium TW-7]
          Length = 985

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 11/190 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           S   +  +  S  ++ QL+  D L+GL N + F   L          +   S+ +FD+D 
Sbjct: 534 SAQDISFVKESQRKMEQLAYFDTLTGLANRTFFRMQLRKSLALAERGHYAFSLFYFDLDE 593

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILAN 197
           FK+IND  GH  GD+++  ++++L     +   + RLGG+EFA    G   QE A  +AN
Sbjct: 594 FKRINDTLGHDAGDQLLIQVANRLKKRLRSEDTIARLGGDEFAVLLSGIESQEHATDVAN 653

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            +++ + N  I + +   I I+ S GI    +       ++  AD A+Y AK+ GRN   
Sbjct: 654 TIQQTL-NMPIMLGNNEVI-ISASIGITMAPYDSLEEDQLLKHADLAMYEAKEKGRNTFH 711

Query: 257 CFSDIENNTC 266
            +S   N   
Sbjct: 712 FYSQELNAAA 721


>gi|126651261|ref|ZP_01723471.1| response regulator receiver domain protein (CheY-like) [Bacillus
           sp. B14905]
 gi|126592099|gb|EAZ86165.1| response regulator receiver domain protein (CheY-like) [Bacillus
           sp. B14905]
          Length = 578

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 76/266 (28%), Positives = 116/266 (43%), Gaps = 37/266 (13%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG------ 83
           Y+ I +++ ++++I  A  FL  I   PF+   +  V  +  +  SI +SL LG      
Sbjct: 313 YYIIGWTVLLSSIIVQALAFLSII---PFHPRVFEEVPAIGAIFESIFLSLALGDKINII 369

Query: 84  ----------------YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
                           Y      KEL  +   +  L+  D L+ + N       L     
Sbjct: 370 KKEHQLMQETLNETLEYKVQERTKELEAAKLELEALANTDRLTQIPNRVRLDDVLEKEFK 429

Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   LSI+  DID+FK +ND FGH VGD V+   +D L         VGR GGEEF
Sbjct: 430 QATGNGTPLSIILLDIDHFKAVNDEFGHQVGDLVLRHAADMLKNHVRVEDIVGRWGGEEF 489

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                 +  ++A  L+ +LR+ +E     +        T S G+      + I +++ R 
Sbjct: 490 LVVCPNTRLKDAVQLSENLRQQLEQHSFPVVHQK----TSSFGVTSFVLGDTIHSLLSRC 545

Query: 241 DQALYVAKKSGRNRVVCF-SDIENNT 265
           D+ALY AK+ GRNRV    +DI + T
Sbjct: 546 DKALYQAKEYGRNRVEFLQNDINSET 571


>gi|90426096|ref|YP_534466.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
 gi|90108110|gb|ABD90147.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
          Length = 915

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 10/189 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYF 139
           +   + +   S  RI+ L+  D L+ L N ++F   +    E+      L++++ DID F
Sbjct: 461 THEDITDRRRSEERIAYLAHYDELTSLPNRTSFRERIEDEFERVARGGTLALLYIDIDEF 520

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND+ GHPVGD ++  ++ +L        FV RLGG+EFA     ++ ++   +   +
Sbjct: 521 KAINDSLGHPVGDALLKIVAARLKACLRETDFVARLGGDEFAIL--QTAPRDVQEVTELV 578

Query: 200 RKIIENSQINISS-GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            ++ E  +      G  I    S GIA    H      +I  AD A+Y AK  GR     
Sbjct: 579 ARLFETIRAPCECLGHQISTDASIGIALAPPHGTDTDQLIKNADLAMYQAKADGRRTCRF 638

Query: 258 FSDIENNTC 266
           F      + 
Sbjct: 639 FEPRMEASA 647


>gi|327399618|ref|YP_004340487.1| diguanylate cyclase [Hippea maritima DSM 10411]
 gi|327182247|gb|AEA34428.1| diguanylate cyclase [Hippea maritima DSM 10411]
          Length = 462

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/179 (36%), Positives = 98/179 (54%), Gaps = 12/179 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           E    Y +  Q++  D L+GL N    +  L           + L ++ FD+D+FK+IND
Sbjct: 280 ESAEMYEKTQQMAAYDELTGLYNRRFGMIRLKEEYKRSLRTEQCLCLIMFDVDHFKKIND 339

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD +++ +S  L   F T   V R GGEEF  A   S ++ A   A ++RKII+
Sbjct: 340 TYGHQAGDYILSSVSKILKSNFRTEDVVLRYGGEEFLCAMSNSDKENAVKKAEEIRKIIQ 399

Query: 205 NSQINISSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +Q      P I ITISAG++        ++ I  +I  AD+ALY+AK+SGRN++V F+
Sbjct: 400 ETQFKWRDVP-IKITISAGVSRIDIKNGEQKSIEQLIKEADEALYIAKRSGRNKIVTFN 457


>gi|313683550|ref|YP_004061288.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM
           16994]
 gi|313156410|gb|ADR35088.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM
           16994]
          Length = 854

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 92/183 (50%), Gaps = 12/183 (6%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIV 132
           ++GY+S G  +    +    I +++ ID L+G+ N   F             + + LS++
Sbjct: 672 IIGYVSTGKDVTLETLMNQEIQRIATIDQLTGIYNRHKFEELFILETERSRRFLQPLSLI 731

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK +ND +GH VGD+V+  L+D +           R GGEEF   +  +  +  
Sbjct: 732 LIDIDHFKVVNDTYGHDVGDEVLKTLADVIGENIRKIDIFARWGGEEFLVLSPNTDLKNV 791

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             LA  LR  +EN+          H+TIS GI+    ++  +T+  R DQ LY AK+ GR
Sbjct: 792 QKLAEKLRSAVENAFFPTVH----HVTISLGISTFREEDTFTTLFKRIDQGLYYAKEHGR 847

Query: 253 NRV 255
           N++
Sbjct: 848 NQI 850


>gi|86750103|ref|YP_486599.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
 gi|86573131|gb|ABD07688.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
          Length = 352

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 62/186 (33%), Positives = 95/186 (51%), Gaps = 9/186 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDY 138
           S   +  L  S   IS  S  D L+GL N   F   +             LS++  DID+
Sbjct: 157 SRQEITNLQASLEAISAESLTDPLTGLGNRKHFDRVVTEAVRSATVSRLPLSLLMMDIDH 216

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK  NDN+GH  GD+V+  +   L     T     R GGEEFA     +  ++A ++A+D
Sbjct: 217 FKSFNDNYGHLTGDQVLRLVGMTLKQSIKTKNVPARYGGEEFAVVLPDTPLRQALMVADD 276

Query: 199 LRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +R+++ + ++   S   I   +T+SAG++     +    +I RAD  LY AK++GRNRV+
Sbjct: 277 IRRVVMSKELKKKSTGEILGRVTLSAGVSTLKPDDDADALIERADACLYSAKRNGRNRVI 336

Query: 257 CFSDIE 262
           C +D E
Sbjct: 337 CETDPE 342


>gi|288573613|ref|ZP_06391970.1| diguanylate cyclase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569354|gb|EFC90911.1| diguanylate cyclase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 481

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/188 (35%), Positives = 100/188 (53%), Gaps = 6/188 (3%)

Query: 72  VIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEKL- 129
           + I+I +  L+  +  S++  +  +Y R + +L+ +D L+G+ N  AF  +     EK  
Sbjct: 291 LAINILVGGLITLVVTSLVALIVRNYERRVERLASVDELTGMWNRRAFDLAFAHLLEKFE 350

Query: 130 ---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
              S+   DID+FK +ND +GH +GD+V+  + D +    G     GR GGEEF     G
Sbjct: 351 GQCSVTMMDIDHFKHVNDTYGHLMGDRVLGHVCDVVTKAIGPDDVCGRWGGEEFIVLLKG 410

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
             + +A   A  +R+ +E S         + IT+S G+AE    E   T I RADQALY 
Sbjct: 411 RKKGDAVKTAEKIRRAVEASPYE-DGDVVLPITVSLGVAEHHPGESRETTIARADQALYR 469

Query: 247 AKKSGRNR 254
           AK+SGRNR
Sbjct: 470 AKESGRNR 477


>gi|239813726|ref|YP_002942636.1| diguanylate cyclase with PAS/PAC sensor [Variovorax paradoxus S110]
 gi|239800303|gb|ACS17370.1| diguanylate cyclase with PAS/PAC sensor [Variovorax paradoxus S110]
          Length = 801

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 82/182 (45%), Gaps = 10/182 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
           YI  + + EL     ++  L+R D L+GL N  +F                 + ++F DI
Sbjct: 601 YILSNDVTELKQKQMKLDALAREDALTGLPNRRSFEEHARDAMARSRRAGLPVCLLFLDI 660

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAIL 195
           DYFK IND+ GH  GD V+     +L           R  G+EF     G+S   EA ++
Sbjct: 661 DYFKTINDSLGHAAGDAVLREFGRRLRESVRETDMAARYAGDEFVILLEGASGAAEAQVV 720

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A  +   +         G ++  T S G+A     E  +++  RAD ALY AKK G+NR 
Sbjct: 721 AGKVLAAMR--PAFHLPGRTLQATTSIGVAVSEDDEDFASLFVRADTALYAAKKEGKNRF 778

Query: 256 VC 257
           + 
Sbjct: 779 MM 780


>gi|167582365|ref|ZP_02375239.1| GGDEF domain protein [Burkholderia thailandensis TXDOH]
          Length = 454

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 107/234 (45%), Gaps = 22/234 (9%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI------LK 91
           ++A  IF A  F+        +G+   L+   S   +  +   L+  ++ S+      L+
Sbjct: 228 WLAHAIFAAGFFMLS------FGVVQALITTRSFATV-YSQQDLMARLAESMARTEGALQ 280

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           EL  +  ++  L+  D L+G  N   FI  + +   +        S++  D+D FK IND
Sbjct: 281 ELKRTNQKLEHLATTDPLTGASNRRKFIEQMQAEIARAKRDGTAFSLLALDLDNFKTIND 340

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH VGD V+     Q +        + R+GGEEF           A+ +A  +R  I 
Sbjct: 341 NYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRTTIA 400

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           N+   I  G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV 
Sbjct: 401 NASFGI-DGTHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 453


>gi|119483270|ref|ZP_01618684.1| hypothetical protein L8106_04436 [Lyngbya sp. PCC 8106]
 gi|119458037|gb|EAW39159.1| hypothetical protein L8106_04436 [Lyngbya sp. PCC 8106]
          Length = 1006

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 72/171 (42%), Gaps = 8/171 (4%)

Query: 94   FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNF 146
                  +   S  D L+GL N      SL          +  + ++  DID+FK+ ND F
Sbjct: 831  LQLREELQNRSIRDPLTGLFNRRYLEESLEREINRACRNDHNVGVIMIDIDHFKRFNDTF 890

Query: 147  GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
            GH  GD V+  +   L           R GGEE       +S +     A  +RK+I+  
Sbjct: 891  GHDGGDAVLKEVGKLLKSSLRASDIACRYGGEEMTLILPEASIENTYKRAEQVRKLIKQI 950

Query: 207  QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
             I         IT S G+A    H      ++ RAD ALY AKK GR+RVV
Sbjct: 951  NIEHKRQSLGTITASLGVACFPEHGMTGDAVVQRADTALYQAKKEGRDRVV 1001


>gi|319763179|ref|YP_004127116.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|330825242|ref|YP_004388545.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Alicycliphilus denitrificans K601]
 gi|317117740|gb|ADV00229.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|329310614|gb|AEB85029.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alicycliphilus denitrificans K601]
          Length = 597

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 13/197 (6%)

Query: 79  SLLLGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEK 128
           +LL   +   + +E+        RI +++  D L+ L N                     
Sbjct: 142 ALLDSAMVSRLQREIEDRRSDQERIYRMAHYDALTQLPNRVLLAERGEEAIRLAQENGTP 201

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+++F D+D FK +ND+ GH VGD ++  ++ +L         V RLGG+EF      ++
Sbjct: 202 LAVMFLDLDNFKHVNDSLGHRVGDALLVEIARRLQGTVRERDTVARLGGDEFVLLLPRAN 261

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVA 247
            Q A  +A  +++     Q        + + +S GIA    H     T+I  AD A+Y A
Sbjct: 262 AQGAERVAAKMQEA--AMQPVQVGHHELSLALSMGIALFPEHGSDFETLIQCADTAMYRA 319

Query: 248 KKSGRNRVVCFSDIENN 264
           K  GRN    F+     
Sbjct: 320 KAGGRNNYCFFTPQMQE 336


>gi|115265595|dbj|BAF32857.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
            actinidiae]
          Length = 1278

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 15/192 (7%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            S + E   S +RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 827  SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQQAERQQAWVVLMFLDLDRFK 886

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAA----IL 195
             IND+ GH  GD+++  ++ +L+        V R+GG+EF        + + A      +
Sbjct: 887  PINDSLGHAAGDRMLQEMATRLLACVSADDTVARMGGDEFTLLLQPDITREAALTRAIHV 946

Query: 196  ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
            A  +   +      +  G    +T S GIA        +S ++  AD A+Y AK+ G+N 
Sbjct: 947  AERILTSL--VTPFVLEGREFFVTASIGIALSPQDGSELSKLMKNADTAMYHAKECGKNN 1004

Query: 255  VVCFSDIENNTC 266
               +    N T 
Sbjct: 1005 FQFYQTDMNATA 1016


>gi|77919891|ref|YP_357706.1| sensor histidine kinase/GGDEF domain-containing protein [Pelobacter
           carbinolicus DSM 2380]
 gi|77545974|gb|ABA89536.1| sensor histidine kinase/FOG: GGDEF domain protein [Pelobacter
           carbinolicus DSM 2380]
          Length = 422

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 62/176 (35%), Positives = 93/176 (52%), Gaps = 9/176 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           KEL         L+R+D L+GL N  AF          +  ++   SI+  DID+FK+IN
Sbjct: 244 KELETQKKIAENLARLDPLTGLSNRRAFFEYGLLLENQIARHHHHFSIIMLDIDHFKKIN 303

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH +GD+ +  L++ L  +  +   +GRLGGEEFA     +S +EAAI++  L+  I
Sbjct: 304 DCYGHEMGDEALKTLAEHLNAIVRSSDILGRLGGEEFAIIMPHASSEEAAIMSERLKTAI 363

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
               ++  +   I  T+S GIAE   K      ++  AD+ALY AK  GRN    +
Sbjct: 364 SKIVLS-DNEQRIRFTVSFGIAECNEKITSFQQVLNNADKALYQAKNEGRNTFRIY 418


>gi|75906861|ref|YP_321157.1| diguanylate cyclase [Anabaena variabilis ATCC 29413]
 gi|75700586|gb|ABA20262.1| Putative diguanylate cyclase (GGDEF domain) with PAS/PAC and Chase2
           sensors [Anabaena variabilis ATCC 29413]
          Length = 737

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL +  + +  L+  D L+GL N   F   L          N  L ++F D+D FKQ+ND
Sbjct: 557 ELKLKEDHLRYLAYHDALTGLPNRKYFAEQLYESINWAKDNNFSLGLLFIDLDGFKQVND 616

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
           + GH +GD+++  ++ +L         V RLGG+EF        + Q AA +A  +   I
Sbjct: 617 SLGHEMGDRLLVVIAQRLSNSLRASDTVARLGGDEFTVILQAIPNVQVAAKVAEKILANI 676

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++  + +G +  +++S GI+          T++ +AD A+Y AK  G+NR     
Sbjct: 677 --TEPIVLNGCTTKVSVSIGISIYPETSLDPDTLLKKADAAMYRAKHLGKNRFELAD 731


>gi|329898138|ref|ZP_08272339.1| Alkyl hydroperoxide reductase subunit C-like protein [gamma
           proteobacterium IMCC3088]
 gi|328920893|gb|EGG28326.1| Alkyl hydroperoxide reductase subunit C-like protein [gamma
           proteobacterium IMCC3088]
          Length = 705

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 95/199 (47%), Gaps = 11/199 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRI---SQLSRIDCLSGLLNHSAFIS----- 120
           L+++  S  +SLL+  +    + +      R+    +L++ D L+G+ + + F       
Sbjct: 328 LTIIAFSSLVSLLVSGLVLVYVNQQKARNQRLAEAKRLAQTDHLTGVWSRAGFEEGLEAL 387

Query: 121 --SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
              LGS    L I   D+D+FK IND +GH  GD V+  L+  +         + R GGE
Sbjct: 388 RARLGSDVRHLGICLLDVDHFKHINDTWGHATGDTVLRELAKVVKRELRDYDLLARWGGE 447

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EF     G S Q A  +A  +R+ + +   +   G S+ +TIS G+        +   + 
Sbjct: 448 EFVIMLEGVSSQVAKNVAERIRQAVASHVFSTELGQSVDVTISMGVTLMSKG-SLDQALE 506

Query: 239 RADQALYVAKKSGRNRVVC 257
           RAD A+Y+AK  GRN+V  
Sbjct: 507 RADNAMYLAKTEGRNQVRL 525


>gi|253998083|ref|YP_003050146.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. SIP3-4]
 gi|253984762|gb|ACT49619.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. SIP3-4]
          Length = 828

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 11/190 (5%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSI 131
           +++      S + E      RI QL+  D L+ L N   F   L    E+         +
Sbjct: 380 AVMGAMTVASDVTENSRYRKRIEQLAYHDILTELPNRLLFNQQLQILIEQTPINKHGFCL 439

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQ 190
           +F D+D FK IND  GH VGDK++  +S ++  + G    + R+GG+EFA +     S  
Sbjct: 440 LFIDLDNFKTINDTLGHSVGDKLLIEVSRRIRQLLGKDDMLARMGGDEFAISLPHCLSRL 499

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKK 249
           +AA+LA  +   + N    +SS     ++ S GIA        +  ++  AD A+Y AK+
Sbjct: 500 DAALLAARIIDAL-NVPFEVSS-IKFFVSASMGIAFYPEDSSHLDDLLKHADLAMYHAKR 557

Query: 250 SGRNRVVCFS 259
            GRN    ++
Sbjct: 558 QGRNNFQFYN 567


>gi|330972150|gb|EGH72216.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 690

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 11/184 (5%)

Query: 82  LGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSI 131
           L     S+ +E            Q + ID L+GL N +A+   L     +       L +
Sbjct: 505 LAARVASMEQEALGFRTHLEEQRQKALIDPLTGLPNRAAWGERLEREMARWHEEKNSLLV 564

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK+IND +GH  GDKV+  +++ L        F+ R GGEEF      +    
Sbjct: 565 CILDLDHFKRINDGYGHLAGDKVLKIVANVLGKRLRADDFMARFGGEEFVMLLPATPPAT 624

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              L ++LR  +E+   +   G  + IT+S G+      E   T I RADQALY AK++G
Sbjct: 625 GLKLLDELRAAVESCPFHFK-GERVTITVSIGMTAFRPSERSDTAIKRADQALYKAKENG 683

Query: 252 RNRV 255
           RNR+
Sbjct: 684 RNRI 687


>gi|238762320|ref|ZP_04623291.1| Sensory box-containing diguanylate cyclase [Yersinia kristensenii
           ATCC 33638]
 gi|238699305|gb|EEP92051.1| Sensory box-containing diguanylate cyclase [Yersinia kristensenii
           ATCC 33638]
          Length = 834

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 61/186 (32%), Positives = 84/186 (45%), Gaps = 11/186 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           S + +   +  RI  LS  D L+GL N       L S           L I+  D+D FK
Sbjct: 393 SDITQEIEAQERIQHLSLHDSLTGLPNRMRMKEFLESKLRNLTAAPHPLVILNVDLDKFK 452

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            +ND FGH  GD+V+  +S++L         V R GG+EF     G SS +E   L   +
Sbjct: 453 PVNDTFGHMAGDQVLHQVSERLRSCLRDQDLVARQGGDEFILIITGLSSIKEIEDLCTRV 512

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
              IE+    I +   I I+ S GIA           ++  AD A+Y AK SGRNR   +
Sbjct: 513 IDRIES--PYIINDQDIFISASIGIALAPQDSMQAEELLRFADIAMYEAKNSGRNRWSFY 570

Query: 259 SDIENN 264
           S   N+
Sbjct: 571 SSEMND 576


>gi|220917475|ref|YP_002492779.1| diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955329|gb|ACL65713.1| diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 764

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 9/185 (4%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           LL+  +  +   +    +++  +L+  D L+GL NH  F   L         Y ++ S++
Sbjct: 568 LLVISMHAAQSIDRARLFDQTERLATTDGLTGLTNHRTFQERLDAHLGQAQRYGKRTSLL 627

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK +ND +GHPVGD+V+  ++  L         V R GGEEFA     +    A
Sbjct: 628 LCDIDHFKSVNDTYGHPVGDQVLRGVARTLARAARGTDVVARYGGEEFAIVMPETDTGGA 687

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSG 251
            ++A  +R+ +         GP + +T+S G+A           +I RAD  LY AK+ G
Sbjct: 688 MVIAERIREKVGQLVFETEQGP-LKVTLSLGVATFPDDGAQKPALIERADACLYHAKRHG 746

Query: 252 RNRVV 256
           RN+ V
Sbjct: 747 RNQSV 751


>gi|78776844|ref|YP_393159.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78497384|gb|ABB43924.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Sulfurimonas denitrificans DSM 1251]
          Length = 659

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 80/178 (44%), Gaps = 11/178 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
              + EL      + +++  D L+G+ N   F       +     YN  LS++  DID+F
Sbjct: 485 ARDISELKAMNKTLEKMANTDNLTGIYNRRKFEEIIKIEMERSARYNSNLSLIMIDIDHF 544

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND +GH  GD VI    + +           R GGEEF      +  + A+ILA  L
Sbjct: 545 KRINDTYGHDEGDNVIRKTVEIVSKNIRHLDVFVRWGGEEFIVLCPQTESKNASILAEKL 604

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R  IE+            IT S G+      E  S+ I R D ALY AK  GRNRVV 
Sbjct: 605 RVAIESVNYETLG----KITCSFGVTSYIKDEDKSSFIKRLDTALYSAKDEGRNRVVA 658


>gi|90423659|ref|YP_532029.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
 gi|90105673|gb|ABD87710.1| diguanylate cyclase (GGDEF domain) [Rhodopseudomonas palustris
           BisB18]
          Length = 470

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 94/184 (51%), Gaps = 10/184 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVF 133
           LL   +  + +++        +L+  D L+G+ N    I  L            +LS+++
Sbjct: 277 LLSEANSRVEQQVEERTREFQRLAHADPLTGIANRRLLIERLDGEVARAAKAGGELSVLY 336

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK INDNFGH  GD+V+  L+  +  +      VGR+GGEEF    L + +  A 
Sbjct: 337 VDIDHFKSINDNFGHAAGDRVLVQLAATMKSLLRQTDLVGRMGGEEFVVLLLNTDQAAAL 396

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +A+ LR+ I   +  + + P   +TIS G+A     E  ++++ RAD AL  AK+ GRN
Sbjct: 397 RVADQLREAISRCEFELITRP---VTISVGVAGYEAAEDAASLLARADHALLQAKRCGRN 453

Query: 254 RVVC 257
           +   
Sbjct: 454 QCRL 457


>gi|312960670|ref|ZP_07775176.1| diguanylate cyclase [Pseudomonas fluorescens WH6]
 gi|311285196|gb|EFQ63771.1| diguanylate cyclase [Pseudomonas fluorescens WH6]
          Length = 388

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 14/228 (6%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG-SILKELFISY 97
           IA V+    ++L +   +P      I V   S  ++S T  L         + +++  ++
Sbjct: 164 IALVLLPCTLWLLF-QPSPMQVGVAIAVLVFSTFVVSATRKLSDALEKAFRLTRQMEHAH 222

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
           N  +  ++ D L+GL+N  AF             + + L  +  D+D+FKQIND +GH  
Sbjct: 223 NISTHAAQTDELTGLMNRRAFFEHAQLLYAQCRHHQQPLCALMMDMDHFKQINDTYGHQA 282

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  +   +   F      GRLGGEEFA     ++ + A  +A  L K I      +
Sbjct: 283 GDQVLRQIGGVISASFRKADVYGRLGGEEFAVLLPNTTLETAREIAEQLIKAISG----L 338

Query: 211 SSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
            S P   ++ S G+A      + +  ++  AD+ALY AK  GRN+V  
Sbjct: 339 VSDPVHGLSASLGVAFTDAVDQDLHGLMNTADKALYRAKAQGRNQVAV 386


>gi|300696967|ref|YP_003747628.1| signal transduction ggdef domain transmembrane protein [Ralstonia
           solanacearum CFBP2957]
 gi|299073691|emb|CBJ53211.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum CFBP2957]
          Length = 488

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 21/235 (8%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           + +F+A      +I+  +     + G+         LV++   ++L + Y+    L+   
Sbjct: 263 YPLFVAVGTATDDIYDNWKARAWWIGV---------LVVLFNVVTLAMAYLFAQHLERRI 313

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFG 147
               R ++L+  D L+GL N  A    L           + LS++  D+D+FK  ND +G
Sbjct: 314 EEQRRHAELAATDALTGLANRRALDERLEAEWRRAARERQPLSVLMIDVDHFKAYNDQYG 373

Query: 148 HPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           HP GD  +  ++  +            R GGEEF     GS    A ++A  +R  I+  
Sbjct: 374 HPDGDVALQAVARCIQANLRRPGDLAARYGGEEFCVVLPGSDLGSANVVAETIRHAIQAL 433

Query: 207 QINISSGPSIHITISAGIAERCHKEPIS----TIIYRADQALYVAKKSGRNRVVC 257
            I  +   +  +T+S G A             T+   AD  LY AK SGRNR V 
Sbjct: 434 DIPHARSDAAVLTVSIGAASGTPAAAGELRTATLTKAADAQLYRAKTSGRNRTVA 488


>gi|53804660|ref|YP_113668.1| response regulator [Methylococcus capsulatus str. Bath]
 gi|32401163|gb|AAP80771.1|AF525283_3 MmoQ [Methylococcus capsulatus]
 gi|53758421|gb|AAU92712.1| response regulator [Methylococcus capsulatus str. Bath]
          Length = 634

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 8/173 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL  +  R+  ++  D L+GL N    +  L          +  LSI+  D+D+FK IND
Sbjct: 460 ELAAANRRLELMAHTDQLTGLPNRRYAMDRLEREWAQARTFDRPLSIMMLDLDWFKSIND 519

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH  GD+ +   +  +     T   V R+GGEEF      ++   A   A  +R  +E
Sbjct: 520 SLGHDAGDQALVHAARVMRETVRTSDVVCRMGGEEFLIIIPDTAGPAAIQTAERVRSAVE 579

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             Q       S  +T S G+A+      +  ++ +AD ALY  K++GRN V  
Sbjct: 580 QQQ-PAKLKLSRPLTASIGVADSTSAPSLKDLLLKADNALYQVKQNGRNGVRY 631


>gi|254475616|ref|ZP_05089002.1| diguanylate cyclase, putative [Ruegeria sp. R11]
 gi|214029859|gb|EEB70694.1| diguanylate cyclase, putative [Ruegeria sp. R11]
          Length = 593

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 10/177 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
            +++   S  D L+GL N           IS   S   +LS++  D+D+FK+ NDN GH 
Sbjct: 400 RDQLHDQSVRDPLTGLFNRRHMTDSLRKGISRCQSQGSRLSLIAIDVDHFKKFNDNHGHD 459

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  +   L           R GGEEF      ++ ++A   A  +R+ +E   + 
Sbjct: 460 AGDMVLRAVGSVLEQACDGDEVACRPGGEEFTLILPDTTPEDALTRAELVRQAVEEVTVR 519

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                   +TIS G++    H      ++  AD+ALY AK  GRN+V   +  +N++
Sbjct: 520 YGEKALPRVTISIGVSHYPSHGTMPQDLMRAADEALYEAKGRGRNQVYVAN--QNDS 574


>gi|312142594|ref|YP_003994040.1| diguanylate cyclase [Halanaerobium sp. 'sapolanicus']
 gi|311903245|gb|ADQ13686.1| diguanylate cyclase [Halanaerobium sp. 'sapolanicus']
          Length = 316

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 92/171 (53%), Gaps = 10/171 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           +L  +  +I +L + D L+GL N   F+        +   ++  LS+V  D+D+FK+IND
Sbjct: 146 KLEKANQKIEELLKTDKLTGLSNRRHFMEYFEKMIANAKRHSLSLSLVMCDLDHFKKIND 205

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH  GD+V+  + + L+          R+GGEEF     G+S +E    A  +RK + 
Sbjct: 206 NYGHGAGDRVLEEVGELLLNETRQGDLASRIGGEEFTIILNGTSLKEGKNYAERIRKKVS 265

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           N +    +     +TIS GI E   ++   + + RAD+ALY AK +GRNRV
Sbjct: 266 NLEFAEINKK---VTISMGITEIQAEDNAESFLKRADRALYKAKNNGRNRV 313


>gi|260221672|emb|CBA30470.1| hypothetical protein Csp_C23710 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 382

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 76/260 (29%), Positives = 116/260 (44%), Gaps = 9/260 (3%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI 64
           L   +  W C     +  S    ++    +F I     I  A +      L    G+  I
Sbjct: 120 LSGLIIAWQCALIAWQLGSERDKVVGRGAYFVIGSFLAISAAFLLRTVGALYGEVGIGSI 179

Query: 65  LVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
              N       + +S+ L  +  G +L     +  R   L+  D L+GL N    + +L 
Sbjct: 180 TTSNPLQSATFLFVSVALMMVCQGVVLMTNERADERNRLLAMQDELTGLSNRRFIMEALA 239

Query: 124 -------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     + +S++  D+DYFK IND +GH  GD+V+  L+  L          GR G
Sbjct: 240 LQLAQARRNGKPVSVLMIDVDYFKSINDTYGHLSGDRVLRNLATSLRSRLRAQDMAGRWG 299

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPIST 235
           GEEF      +    A ILA +LR  +E+++ +   G SI +T+S G+       E + T
Sbjct: 300 GEEFLVVLPDTDAAGATILAGNLRAEVEDARWSAQDGRSIPLTLSIGVHTCDSATEELDT 359

Query: 236 IIYRADQALYVAKKSGRNRV 255
           +I  ADQALY AK++GRNRV
Sbjct: 360 VISAADQALYRAKQAGRNRV 379


>gi|153871720|ref|ZP_02000821.1| diguanylate cyclase/phosphodiesterase [Beggiatoa sp. PS]
 gi|152071815|gb|EDN69180.1| diguanylate cyclase/phosphodiesterase [Beggiatoa sp. PS]
          Length = 578

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 10/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            I +EL  +   + +L  +D L+ + N   F               + ++++  D+D+FK
Sbjct: 380 QIEQELHKTNEELQRLVSLDSLTNIANRRRFDEHFDQEWKRSKREKKPITLIMCDVDFFK 439

Query: 141 QINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GH +GDK +  ++  +   +      V R GGEEFA     +  + A  +A  +
Sbjct: 440 LYNDTYGHQLGDKCLRVIAKAISKQIKRPSDLVARYGGEEFAVILPNTKPEGAVKVAEAI 499

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257
           R  +E+ +I   S P+  +T+S G++    + P S   ++  AD+ALY AKK GRNR V 
Sbjct: 500 RLELEHLKIAHLSSPNKIVTLSLGVSSLPTRPPFSQKILLTLADKALYEAKKRGRNRTVL 559

Query: 258 FSDIE 262
            ++ E
Sbjct: 560 KTEKE 564


>gi|295675116|ref|YP_003603640.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
 gi|295434959|gb|ADG14129.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
          Length = 505

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 88/197 (44%), Gaps = 10/197 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128
           SL++I     ++L    G+ L+      + + +L+  D L+GL N  A   +L     + 
Sbjct: 304 SLMLILGGGVIVLAAWLGAELRRRQRVEHELERLAGTDGLTGLPNRRALCETLDREWLRA 363

Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFA 181
                 LS++F DID+FK  ND +GH  GD  +  ++  +  V       VGR GGEEF 
Sbjct: 364 RRTGSVLSLLFVDIDHFKAYNDTYGHQAGDVALTAVARCIRRVSQRPGDCVGRYGGEEFV 423

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYR 239
                +    A ++A  +R  I+   I         +T+S G           +  ++  
Sbjct: 424 VVLPDTDVTGAEVVAEKIRAAIDELDIAHVGCEFGRVTVSIGATMSRPDRAMDVGAVVRA 483

Query: 240 ADQALYVAKKSGRNRVV 256
           AD+ALY AK  GRN V 
Sbjct: 484 ADEALYSAKAGGRNMVA 500


>gi|254788445|ref|YP_003075874.1| ggdef domain-containing protein [Teredinibacter turnerae T7901]
 gi|237684051|gb|ACR11315.1| ggdef domain protein [Teredinibacter turnerae T7901]
          Length = 580

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 60/181 (33%), Positives = 85/181 (46%), Gaps = 11/181 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYF 139
            S  KEL          +  D L+GL N  A+             Y+  L I   DID+F
Sbjct: 400 SSKTKELLEEE---RYRATHDSLTGLPNREAYNERVYQEYRRFTRYSRPLGIAVCDIDHF 456

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+INDNFGH  GD+V+  ++  +        FV R GGEEF      +S  ++  + + +
Sbjct: 457 KKINDNFGHQTGDRVLKLIARLISTRLRKVDFVARYGGEEFVILLPETSASQSRSVLDKI 516

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           R  +  +       P + IT+S GI+     + I T   RAD+ALY AK  GRNR V  +
Sbjct: 517 RAAVAKAAFRFGDDP-VKITLSFGISAFRSDDTIETAFQRADKALYQAKADGRNRCVVDT 575

Query: 260 D 260
           D
Sbjct: 576 D 576


>gi|121592804|ref|YP_984700.1| PAS/PAC sensor-containing diguanylate cyclase [Acidovorax sp. JS42]
 gi|120604884|gb|ABM40624.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax sp. JS42]
          Length = 890

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 11/179 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + E    +  + +L+ +D L+GL N      +L           + LS+V  DID+FKQ
Sbjct: 708 DVTEQRAQHELLRKLAFMDGLTGLANRRQLDRTLKAEWRRCRRSGQPLSVVMVDIDHFKQ 767

Query: 142 INDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND +GH  GD  +  ++  L   +  +   V R GGEEF           A   A  L 
Sbjct: 768 FNDLYGHQQGDDCLRAVAAALRGGLGRSHDLVARYGGEEFVCLLPECDLDGARAKAQALC 827

Query: 201 KIIENSQINISSGPSIH-ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +   Q+     P    +T+SAG+A      ++    ++ RAD  LY AK +GRNRV 
Sbjct: 828 RAVHARQMEHRGSPVAPVVTVSAGVACVVPGAEDTPEQLLARADANLYRAKAAGRNRVH 886


>gi|27380234|ref|NP_771763.1| response regulator PleD [Bradyrhizobium japonicum USDA 110]
 gi|27353388|dbj|BAC50388.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 457

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 80/164 (48%), Gaps = 9/164 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N     S L +         + L+++  DIDYFK INDN+GH  GD V
Sbjct: 290 EMAITDTLTGLHNRRYMESHLATLAEQAATRGKPLALMILDIDYFKSINDNYGHDAGDDV 349

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG- 213
           +   + ++           R GGEEF      +    A ++A  LR+ I      I  G 
Sbjct: 350 LREFAVRVRKSIRGIDLACRYGGEEFVIVMPETDLHVAGMVAERLRRSIAGEPFAIHKGT 409

Query: 214 PSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
             I +TIS G+       E ++ ++ RAD ALY AK  GRNRVV
Sbjct: 410 KRIEVTISIGLTTLEQKGEAVTDVLKRADTALYRAKHDGRNRVV 453


>gi|46201915|ref|ZP_00054102.2| COG5001: Predicted signal transduction protein containing a
           membrane domain, an EAL and a GGDEF domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 833

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 11/183 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           + G  + E  ++  RI +L+  D L+ L N   F   L            KL+++F D+D
Sbjct: 383 LVGRDVTERKMTAARIQRLAHHDSLTDLPNRVLFQERLRQSLAQAKRSGWKLALMFLDLD 442

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA 196
            FK +ND  GH VGD ++  ++ +L+        V RLGG+EFA         + A+ +A
Sbjct: 443 KFKDVNDTLGHHVGDLLLRAVAKRLIRCVRETDTVARLGGDEFAVLLTNLDDLEGASRVA 502

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             +   I +          +  + S GI            ++  AD A++ +K  GRN  
Sbjct: 503 ETIIAGISD--PFGLEEHEVRTSTSIGITIYPDDSSDAEQLLKNADLAMFRSKAEGRNNY 560

Query: 256 VCF 258
             +
Sbjct: 561 HFY 563


>gi|83644835|ref|YP_433270.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83632878|gb|ABC28845.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 999

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 91/191 (47%), Gaps = 11/191 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDID 137
           ++   +  L  S + + QL+  D L+GL +   F   L +   +       ++++F DID
Sbjct: 548 VTCEDITLLKKSKDEMEQLAFYDHLTGLESRLLFKLRLENAITRAVRDKSMIALMFIDID 607

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILA 196
           +FK+INDN+GH  GD+V+  ++ ++         V R+ G+EF           +A  +A
Sbjct: 608 HFKEINDNYGHDAGDEVLKTVAARIKQNVRKNDTVARISGDEFTVILSDIRGHVDARRVA 667

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             +R+ +  ++    +G    +  S GI+        +  ++  AD A+Y AK++GRN +
Sbjct: 668 QGIRRTL--NRPFKFAGKEYIVGASIGISIAPDDGVELDELLKNADTAMYQAKRNGRNDI 725

Query: 256 VCFSDIENNTC 266
             FS   N   
Sbjct: 726 QFFSHSMNEEA 736


>gi|289208600|ref|YP_003460666.1| diguanylate cyclase with PAS/PAC and GAF sensors [Thioalkalivibrio
           sp. K90mix]
 gi|288944231|gb|ADC71930.1| diguanylate cyclase with PAS/PAC and GAF sensors [Thioalkalivibrio
           sp. K90mix]
          Length = 483

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 10/187 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSI 131
            + L+   I+G++ +        +++ +R+D L+GL N   F   L           LS+
Sbjct: 289 ALRLVADMIAGTLAR--KQVEQELARQARVDGLTGLANRREFDHQLERECAARRERSLSL 346

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQ 190
           +  DID+FK  ND FGH  GD  +  ++D +  +         R GGEEFA     ++ +
Sbjct: 347 LMIDIDHFKPYNDAFGHQAGDDCLRAVADVIRSILNRPADVGARYGGEEFACVLADTNPE 406

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAK 248
               +A  +R+ +    +         +TIS G+     + P+    ++ +AD+ALY AK
Sbjct: 407 GGLRVAERIREAVYGLDLKQPDTDEGRVTISIGVCSVHTRWPVEPRALLRQADEALYRAK 466

Query: 249 KSGRNRV 255
           ++GRNRV
Sbjct: 467 RAGRNRV 473


>gi|254250789|ref|ZP_04944108.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
 gi|124879923|gb|EAY67279.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
          Length = 693

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 52/211 (24%), Positives = 97/211 (45%), Gaps = 13/211 (6%)

Query: 64  ILVENLSLVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           I+V  L+++ I++ +S+L   L   +  +   L  +   ++ L+  D L+ L N      
Sbjct: 220 IIVATLAILAIALIVSILDLRLEARTAVLATSLAAANQELTYLALHDNLTKLPNRVLLED 279

Query: 121 SLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            +          +   +++F D+D FK +ND +GH VGD ++  ++ ++     +   + 
Sbjct: 280 RIDQAIQGADREHGSFALMFMDLDGFKAVNDAYGHHVGDLLLVDVARRIGANLRSQDTIA 339

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           RLGG+EF  A       +AA +A+ +  +I   +    S   + ++ S GIA    +   
Sbjct: 340 RLGGDEFVLAVAVDEPADAADVADKILAVIR--KPFRVSEHELRVSASIGIALYPGNGSD 397

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
              ++  AD A+Y AK  GRN    F    N
Sbjct: 398 FRDLMTNADAAMYHAKALGRNAYCFFEASMN 428


>gi|152998292|ref|YP_001343127.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Marinomonas sp. MWYL1]
 gi|150839216|gb|ABR73192.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinomonas sp. MWYL1]
          Length = 734

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 88/179 (49%), Gaps = 6/179 (3%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDN 145
            + E+  +++++  L+  D L+ L N  A   +       N K++++F D+D+FK +ND 
Sbjct: 288 DIDEIQKAHDQVEWLAHHDSLTKLPNRVALNKTFHKIIKPNTKIALLFIDLDHFKNVNDT 347

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH +GD+++  ++D++  +     +V R GG+EF       +E+        +++ +  
Sbjct: 348 LGHSIGDQLLLTVADRMRTLVNNIGYVARQGGDEFIILLPADNEECLIEKTCAIKEALSA 407

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                       IT S G++    + E   T+  RAD A+Y AK +GRNR   F++   
Sbjct: 408 R--YNIDQHQFFITPSIGVSLYPRNGEDFDTLYQRADAAMYHAKHTGRNRYAFFTEEMQ 464


>gi|239904985|ref|YP_002951724.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239794849|dbj|BAH73838.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 570

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 90/174 (51%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           +EL      ++ LS  D L+GL N                 Y    S++  D+D FK +N
Sbjct: 390 RELDAKNQALAVLSLTDRLTGLCNRRRLDQVLSGEWRRAHRYGTPFSVIMIDLDNFKDVN 449

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGH VGD V+  ++D L+ V      VGR GGEEF      ++ ++A +LA  LR+ +
Sbjct: 450 DTFGHAVGDAVLLRVADILLAVVRETDVVGRFGGEEFLLVCPETTVEDARVLAEALRREL 509

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +++   I       IT S G+A+       + ++ RAD+ALY AK+SGRN+V+ 
Sbjct: 510 QDTDFPIVG----RITASFGLADYEADPGPAALVARADKALYRAKQSGRNQVIV 559


>gi|229593072|ref|YP_002875191.1| putative GGDEF/EAL domain regulatory protein [Pseudomonas
           fluorescens SBW25]
 gi|229364938|emb|CAY53042.1| putative GGDEF/EAL domain regulatory protein [Pseudomonas
           fluorescens SBW25]
          Length = 701

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 94/190 (49%), Gaps = 10/190 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           ++   + E+   + ++   +  D L+GLLN   F  ++           + L +++ D+D
Sbjct: 256 VTVLDMSEVRHLHQQLEFQAVTDPLTGLLNRRGFYQAVENTLLRSERVEQSLVLLYLDLD 315

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK++ND+ GH  GD+V+ ++S+QL     +   +GR+GG+EF A       ++AA +A 
Sbjct: 316 GFKRVNDSLGHDAGDRVLRWVSEQLQGCLRSYDILGRMGGDEFTALLELEFPEQAAKIAE 375

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
            L + +   Q     G  + + +S GIA        ++ ++  AD A+Y AK++GR +  
Sbjct: 376 KLIERVSICQQ--VEGLDVMLGVSIGIATFPDCGSDLNGLLRAADIAMYEAKRAGRQQYR 433

Query: 257 CFSDIENNTC 266
            +    N   
Sbjct: 434 YYDQEMNGRA 443


>gi|83643401|ref|YP_431836.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631444|gb|ABC27411.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 373

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 12/206 (5%)

Query: 62  EYILVENLSLVIISIT-ISLLLGYISGSIL---KELFISYNRISQLSRIDCLSGLLNHSA 117
           E++L+  L +V+  +  I   +  +  S+     +L  +  +IS ++  D L+GL     
Sbjct: 158 EFVLLTALFMVMAQMALIGGFISKLRASLRVKNHQLNEALEKISVMASTDELTGLCTRRE 217

Query: 118 FISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
            +  L          +  LS+   DID+FK+IND++GH  GD V+  ++  +  +  +  
Sbjct: 218 LMKQLSNEFSRCRRSSGALSLCLLDIDHFKRINDSYGHQAGDAVLKKVAQTMQSLVRSID 277

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            +GR GGEEF      +    A I A  LR+ + +        P   +TIS G AE    
Sbjct: 278 CLGRYGGEEFLLILPQTPLDGAFITAERLRRAVMDIPFP-EVAPEFRVTISLGAAELEEG 336

Query: 231 EPISTIIYRADQALYVAKKSGRNRVV 256
           E + T+I R D+ALY AK +GRNRVV
Sbjct: 337 EAMETLISRVDKALYAAKGAGRNRVV 362


>gi|312879045|ref|ZP_07738845.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM
           12260]
 gi|310782336|gb|EFQ22734.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM
           12260]
          Length = 626

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 11/179 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           S   + +       I+  +  D L+GL N   F+  L           E+L ++F D+D+
Sbjct: 442 SLQDITDRRNHEETIAHQATHDALTGLPNRPLFLDRLDQALARAERTGERLGVLFMDLDH 501

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAN 197
           FK+IND+ GH VGD+++A ++ +L         V R+GG+EF     G    ++A   A 
Sbjct: 502 FKEINDHLGHLVGDRILAEVALRLKETLRAQDTVARMGGDEFTFLLPGLGRPEDAERAAG 561

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
            + +        +    ++ +T S GIA    H      ++ RAD ALY AK  GRNR 
Sbjct: 562 RILEAFRA--PFVLEDTAVSVTASLGIALFPEHGTGTLDLMRRADLALYQAKSRGRNRY 618


>gi|307152731|ref|YP_003888115.1| diguanylate cyclase [Cyanothece sp. PCC 7822]
 gi|306982959|gb|ADN14840.1| diguanylate cyclase [Cyanothece sp. PCC 7822]
          Length = 447

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +  ++ +L+  D L+ L N   F   L             +S++  D+D+FK  N
Sbjct: 269 RDLEKAKQKLEKLATTDQLTQLANRRKFDQYLQYEWRRSIREKIPISLILCDVDHFKLYN 328

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GDK +  ++  +   V  +   V R GGEEFA     ++ + A  +A D+R  
Sbjct: 329 DCYGHLAGDKCLKRVAKVMETIVKRSADLVARYGGEEFAIVLSNTNLEGAQKVAEDIRLA 388

Query: 203 IENSQINI-SSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +I    SG + ++T+S GI+      +    T+I  AD+ALY AK+ GRN    
Sbjct: 389 VAKRKIPHGVSGANPYVTVSLGISTTIPSLESSSKTLINTADKALYQAKERGRNCCCV 446


>gi|146341144|ref|YP_001206192.1| putative diguanylate cyclase [Bradyrhizobium sp. ORS278]
 gi|146193950|emb|CAL77967.1| putative diguanylate cyclase (GGDEF) [Bradyrhizobium sp. ORS278]
          Length = 408

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 70/260 (26%), Positives = 119/260 (45%), Gaps = 23/260 (8%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL 69
            +W    + L+   P    +         +   I + N+     G    +   ++ + ++
Sbjct: 135 ELWQERRRTLQKRWPA---VLVPAMHGFVLMLPILLGNMLRDANGA---FAAAWVTIFSI 188

Query: 70  SLVIISI-TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121
            LV+ ++ T+ ++   +S  I+     +       +  D L+GLLN   F       I  
Sbjct: 189 ELVLYAVGTVFVIFMLVSERIVSAHKRA-------ATTDPLTGLLNRRGFADACAQLIER 241

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                + +S++ FDID+FK IND FGH  GD+V+   +D +V         GR+GGEEFA
Sbjct: 242 EARAQQPVSVLIFDIDHFKSINDRFGHAEGDEVLKIFADVVVNNLRLTDLSGRIGGEEFA 301

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
           A     S +EA + A  +R+    S +     P +  T+S G+A       +  ++  AD
Sbjct: 302 ALLP-CSIEEAMVAAERVREAFAASGVVCEEKP-VDTTVSIGVAGGPAGTELDVLLAAAD 359

Query: 242 QALYVAKKSGRNRVVCFSDI 261
            ALY AK+SGRNRV   +++
Sbjct: 360 TALYKAKRSGRNRVEASAEL 379


>gi|119486067|ref|ZP_01620129.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]
 gi|119456842|gb|EAW37970.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]
          Length = 346

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 13/182 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +   + +L+  D L+ L N   F          +    + LS++  D+D+FK  ND
Sbjct: 157 ELQQANRELQRLAVTDSLTQLANRRQFDEYLIHEWLRMLREQQFLSVILCDVDFFKNYND 216

Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GHP GD  +  ++  +   V        R GGEEF      +  + A  +A  +R+ I
Sbjct: 217 KYGHPAGDNCLRKVAKAICQQVQRPGDLAARYGGEEFVIILPNTQAEGAINVAEGIRQAI 276

Query: 204 ENSQINISSGP-SIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC--F 258
           ++  I  S    +  IT+S+G+A       +  S +I  AD ALY AKK GR+ V+   F
Sbjct: 277 KSLNIPHSQSKIADCITVSSGVASVVPQANDSPSNLIATADTALYEAKKKGRDCVIYKPF 336

Query: 259 SD 260
           SD
Sbjct: 337 SD 338


>gi|329926642|ref|ZP_08281055.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
 gi|328939183|gb|EGG35546.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
          Length = 529

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 54/180 (30%), Positives = 81/180 (45%), Gaps = 8/180 (4%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDY 138
           L +I G+  + +      + Q +  D L+GL N       L S+    E  +++  DID+
Sbjct: 349 LNWIMGAAAETMAKQTQSLQQEAITDPLTGLSNRRELERCLESWDALGEPYAVILLDIDH 408

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND +GH  GD+++  ++  +V          R GGEEF       S   A  +A  
Sbjct: 409 FKAINDTYGHQTGDQILKLVAAVMVDCAPADAVCSRFGGEEFVILLRERSLDTAYRMAER 468

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +R+ I  S    S      +T+S G++    H      +   AD ALY AK  GRNR V 
Sbjct: 469 IRRAILVSPTPYSG----TLTVSIGVSLYPEHGGNREDVFQAADMALYRAKGEGRNRTVA 524


>gi|88857866|ref|ZP_01132508.1| hypothetical protein PTD2_10789 [Pseudoalteromonas tunicata D2]
 gi|88819483|gb|EAR29296.1| hypothetical protein PTD2_10789 [Pseudoalteromonas tunicata D2]
          Length = 324

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 63/192 (32%), Positives = 99/192 (51%), Gaps = 11/192 (5%)

Query: 78  ISLLLGYISGSIL--KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------ 129
           I +++  ++   +  KEL  + +++  LSRID L+GL N   +  SL    ++L      
Sbjct: 128 ICIIIYDVTDEAINKKELEEANHKLESLSRIDRLTGLYNRGFWEESLKKEAKRLQRNEGQ 187

Query: 130 -SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
             ++  D+D+FK+IND FGH  GD  +  ++D L         +GR GGEEFA   + + 
Sbjct: 188 SCLLMLDVDHFKRINDEFGHSGGDAALRHIADVLKKTLRESDLIGRFGGEEFAVTLVDTD 247

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVA 247
            +   + A  +RKI+  S I I     I +TIS G+A            I  AD+ALY +
Sbjct: 248 VEGGKVFAERVRKILAESTI-IFDNNQIKLTISLGLAPYKKSYLQHEQWIADADKALYYS 306

Query: 248 KKSGRNRVVCFS 259
           K++GRNRV  + 
Sbjct: 307 KENGRNRVTVYD 318


>gi|317129066|ref|YP_004095348.1| diguanylate cyclase with PAS/PAC sensor [Bacillus cellulosilyticus
           DSM 2522]
 gi|315474014|gb|ADU30617.1| diguanylate cyclase with PAS/PAC sensor [Bacillus cellulosilyticus
           DSM 2522]
          Length = 391

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 84/182 (46%), Gaps = 11/182 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           +       +++ QL+  D L+ L N           ++        L+++F D+D FK +
Sbjct: 186 ITRQKELEDKLRQLAYYDELTDLPNRLMIFKHVKKALARSKRQEHNLAVMFIDLDGFKNV 245

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD ++  ++ +L          GRLGG+EF         +E  ++A  + + 
Sbjct: 246 NDTMGHDAGDTLLKDVATRLSESVREEDLTGRLGGDEFILVLEEVQNEEIEMIAKRIIEN 305

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF-SD 260
           I N    I  G  ++++ S GI+      E    ++  AD+A+Y AK +G+N    + S+
Sbjct: 306 ISN--PFIIDGEEVNVSPSIGISMFPSDGEVFDELVQNADKAMYYAKTNGKNSYKFYTSE 363

Query: 261 IE 262
           +E
Sbjct: 364 LE 365


>gi|34498647|ref|NP_902862.1| two component sensor [Chromobacterium violaceum ATCC 12472]
 gi|34104500|gb|AAQ60858.1| probable Two component sensor [Chromobacterium violaceum ATCC
           12472]
          Length = 558

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 97/233 (41%), Gaps = 23/233 (9%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           S+     +  A + L    L  F      L    S+V I + +S  + Y+SG        
Sbjct: 319 SLLAGYALASAVVLLSSAALLYFAS----LWAGGSVVAILLLLSGTMRYVSGQ------- 367

Query: 96  SYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGH 148
              ++  L+  D L+ L N   F               + L+++  DID+FK+ ND++GH
Sbjct: 368 --AQLFSLAFTDGLTRLYNRRHFDEAFGHAVEQCRQKRKPLALLILDIDHFKKYNDHYGH 425

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
             GD+ +  ++  L   F     +  RLGGEEF          +A   A      +   +
Sbjct: 426 YAGDEALQKVARALKDCFRQKGQLTARLGGEEFGVLLTPGDTPQALSAAERFLGRLAAME 485

Query: 208 INISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +  S+ P   I+ S G+        +   T+  +ADQALY AK+ GRNR   +
Sbjct: 486 LPHSASPLGKISCSIGVCACIPGPADSTRTLFEQADQALYEAKRGGRNRASLY 538


>gi|254492134|ref|ZP_05105309.1| GGDEF domain protein [Methylophaga thiooxidans DMS010]
 gi|224462686|gb|EEF78960.1| GGDEF domain protein [Methylophaga thiooxydans DMS010]
          Length = 252

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 65/208 (31%), Positives = 110/208 (52%), Gaps = 11/208 (5%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +++ L+   S+V     I   + +    +  +L    N++  L+  D L+ LL+  AF++
Sbjct: 41  IDWQLISTASVVPA--LICPFVMWFVIQMTLDLHHMENKMRYLASYDDLTELLSRRAFLT 98

Query: 121 S-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           S       +   ++  SI + DID FK+IND++GH  GD+V+   S  L V   +   VG
Sbjct: 99  SSQKLFSLMNRSHKPFSIAYIDIDDFKKINDSYGHAAGDEVLKSFSVILEVHTRSSDLVG 158

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--E 231
           R+GGEEFA A   +    AA +   +R++ E   +  SS  ++  TIS GI+       +
Sbjct: 159 RIGGEEFAIALPDTGAHGAARVVELIREVSEQQMLTTSSKATLSYTISIGISTSDSNKTQ 218

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
            +  +I +AD+ALY AK +G+NR++ F 
Sbjct: 219 TLEQLIQQADRALYEAKVAGKNRIIQFE 246


>gi|78060867|ref|YP_370775.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. 383]
 gi|77968752|gb|ABB10131.1| diguanylate cyclase (GGDEF domain) [Burkholderia sp. 383]
          Length = 312

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 100/203 (49%), Gaps = 11/203 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           L     +  + +TIS +       + +E   +  ++ + +  D L+G+ N   F + L  
Sbjct: 113 LTRGRDVEAVCVTISDVTH--VSVMQREREEAVAKLREHANRDGLTGIANRRFFEARLGD 170

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   +S++ FD+D+FK IND FGH  GD V+   + ++  +       GR GG
Sbjct: 171 EFSRWQRYGGDMSVLLFDLDHFKTINDRFGHAAGDAVLRETARRVAAIVRAQDTFGRFGG 230

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STI 236
           EEFA     ++  EA ++A+ +R  I +  ++ + G S+ +T S G A      P    +
Sbjct: 231 EEFALLLPCTNLDEAMLVADKVRDAIGSMPVD-AEGVSVPVTASVGGACAKTGAPTCDVL 289

Query: 237 IYRADQALYVAKKSGRNRVVCFS 259
           +  AD ALY AK+ GR+R V +S
Sbjct: 290 VNEADAALYRAKRLGRDRSVAYS 312


>gi|95931099|ref|ZP_01313825.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95132844|gb|EAT14517.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 1174

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 107/223 (47%), Gaps = 20/223 (8%)

Query: 48   IFLFYIGLTPFYGLEY-ILVENLSLVIISITISLLLGYISGS-------ILKELFISYNR 99
            I   +I +T   GL+Y  L +    V++ +   L   Y+            +EL      
Sbjct: 800  IISRWISVTYDNGLDYRTLAKAGGAVLMIVGFLLYRQYLIRRSNLTLMAAHRELEEKNQE 859

Query: 100  ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
            +++LS  D L+GLLN  A        I      N  +S++  D+DYFK+INDNFGH  GD
Sbjct: 860  LNRLSMTDKLTGLLNRHAIEPIIDNEIGRHKRANNPVSLLIVDLDYFKKINDNFGHAAGD 919

Query: 153  KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            KV+  +S  L+ V  +   + R GGEEF   A  +   +A  LA  +R+ I   QI+   
Sbjct: 920  KVLKEVSTALIAVTRSSDSLARWGGEEFLLVAGDTRILKATALAEKIRQTIAGLQID--- 976

Query: 213  GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               I +T S G+AE    E       R D+ALY AK SGRN V
Sbjct: 977  --DIPVTASIGVAEFNTDETFHQWYERCDKALYQAKDSGRNCV 1017


>gi|116686645|ref|YP_839892.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia
           HI2424]
 gi|116652360|gb|ABK12999.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia
           HI2424]
          Length = 693

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 52/211 (24%), Positives = 97/211 (45%), Gaps = 13/211 (6%)

Query: 64  ILVENLSLVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           I+V  L+++ I++ +S+L   L   +  +   L  +   ++ L+  D L+ L N      
Sbjct: 220 IIVATLAILAIALIVSILDLRLEARTAVLATSLAEANQELTYLALHDNLTKLPNRVLLED 279

Query: 121 SLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            +          +   +++F D+D FK +ND +GH VGD ++  ++ ++     +   + 
Sbjct: 280 RIDQAIQAADREHGSFALMFMDLDGFKAVNDAYGHHVGDLLLVDVARRIGANLRSQDTIA 339

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           RLGG+EF  A       +AA +A+ +  +I   +    S   + ++ S GIA    +   
Sbjct: 340 RLGGDEFVLAVAVDEPADAADVADKILAVIR--KPFRVSEHELRVSASIGIALYPGNGSD 397

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
              ++  AD A+Y AK  GRN    F    N
Sbjct: 398 FRDLMTNADAAMYHAKALGRNAYCFFEASMN 428


>gi|325274524|ref|ZP_08140588.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas sp.
           TJI-51]
 gi|324100341|gb|EGB98123.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas sp.
           TJI-51]
          Length = 796

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 63/211 (29%), Positives = 102/211 (48%), Gaps = 14/211 (6%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           Y    P  GL ++  E    V      +L  GY++   + +L    + + +LS  D L+G
Sbjct: 588 YRVCLPRAGLRWVRGEATPEVGEQ-GCTLWHGYLT--DISDLKGVEHELRRLSVTDSLTG 644

Query: 112 LLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           + N   F   L           + L+++  DID+FK+IND FGH VGD+V+  L  ++  
Sbjct: 645 IHNRRYFQERLKNELERAQRDGQALAVIMLDIDHFKRINDRFGHAVGDRVLRSLCQRIGQ 704

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                    RLGGEEF     G+  ++A +LA +L + + N  ++        +T S G+
Sbjct: 705 RLRRTDVFCRLGGEEFMVLCPGTDAEQARVLALELWQGVRNDPVDGVG----QVTASFGV 760

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A     E    ++ RAD  +Y AK++GR+RV
Sbjct: 761 AGWRPGEGADALLLRADAGVYAAKQAGRDRV 791


>gi|288941995|ref|YP_003444235.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
 gi|288897367|gb|ADC63203.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
          Length = 317

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 17/187 (9%)

Query: 87  GSILKELFISY------NRI-SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
             ++++L  +       NR+  QL+R D L+ L N   F+  L        + +  LS++
Sbjct: 134 SRLVRDLRKANHDLEQANRLNEQLARTDALTQLPNRRYFMERLNHGVRQAQTRSHPLSVL 193

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK++ND FGH  GD+V+   ++ +          GRLGGEEF      +  + A
Sbjct: 194 MMDLDHFKRVNDTFGHAAGDRVLVAFAELMRAQVRLSDLPGRLGGEEFGLYMFDAELEVA 253

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             +A  LR  +   +           ++S G+A     E    ++ RAD  LY AK++GR
Sbjct: 254 VSVAERLRAHVNLMR---PLDTDYRPSVSIGVAALAPGEDTEQLLKRADDGLYRAKETGR 310

Query: 253 NRVVCFS 259
           NRV+  +
Sbjct: 311 NRVIAAT 317


>gi|78776812|ref|YP_393127.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78497352|gb|ABB43892.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM
           1251]
          Length = 611

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 59/166 (35%), Positives = 83/166 (50%), Gaps = 11/166 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
            + +L+ ID L+G  N       +          ++ LS++  DID+FK +ND +GH  G
Sbjct: 449 ELERLASIDKLTGAYNRRMIDEFMKKEIFLHVRDSKNLSLIMADIDHFKLVNDTYGHQAG 508

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V++ +   +          GR GGEEF      +S Q+A ILA  +R+ IEN      
Sbjct: 509 DAVLSDVGRIISSTIRKSDIFGRYGGEEFIVICPNTSSQQALILAQKIREEIENFHFAEV 568

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                  TIS G+A     + +  II RAD ALY+AKK GRNRVV 
Sbjct: 569 GHK----TISLGVATLIANDEVENIIKRADDALYIAKKEGRNRVVL 610


>gi|313107253|ref|ZP_07793449.1| motility regulator [Pseudomonas aeruginosa 39016]
 gi|310879951|gb|EFQ38545.1| motility regulator [Pseudomonas aeruginosa 39016]
          Length = 1111

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 15/192 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + E   S  RI +L+  D L+ L N + F   L           + + ++F D+D FK
Sbjct: 658 SDISERKASERRIHRLAYYDALTHLPNRTLFQDRLHTALQQAERNGQWVVLMFLDLDRFK 717

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAIL 195
            IND+ GH  GD+++  ++ +L         V R+GG+EF        ++E     A  +
Sbjct: 718 PINDSLGHAAGDRMLQEVATRLSACVSQDDTVARMGGDEFTLLLPSQGDREIALKRAIQV 777

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  +   +   +     G    +T S G+A        +S ++  AD A+Y AK+ G+N 
Sbjct: 778 AELILGRLA--RPFTLEGREFFVTASIGVALSPQDGAELSLLMKNADTAMYHAKEMGKNN 835

Query: 255 VVCFSDIENNTC 266
              +    N   
Sbjct: 836 FQFYQAEMNARA 847


>gi|224825197|ref|ZP_03698303.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
 gi|224602868|gb|EEG09045.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
          Length = 709

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 100/208 (48%), Gaps = 13/208 (6%)

Query: 70  SLVIISITISLLLGYISG--SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---- 123
           SLV +++ +  L   + G    + +   + +R++ L+  D L+GL N + F   LG    
Sbjct: 242 SLVPVALDLPQLSSRLYGVARDVTDKKHAEHRMAYLAYHDLLTGLPNRALFRDRLGLAIM 301

Query: 124 ---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                  +++++F D+D FK  ND FGH  GD+++  +  +L  V      + RLGG+EF
Sbjct: 302 QAKRKGRQVAVLFVDLDRFKLANDTFGHIKGDELLKQVGQRLQCVLRECDTLARLGGDEF 361

Query: 181 AAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIY 238
                  S +++AA+LA  L K +         G  + +T+S GIA      + I T++ 
Sbjct: 362 TILLPDLSGKEDAALLAGKLVKEVAA--PFSIDGDDVFLTVSIGIAVFPDDGDDIETLLR 419

Query: 239 RADQALYVAKKSGRNRVVCFSDIENNTC 266
            AD A+Y  K  G+N    F  + +   
Sbjct: 420 HADIAMYQVKAQGKNGFGFFLPVMDAAA 447


>gi|91223751|ref|ZP_01259015.1| hypothetical protein V12G01_18442 [Vibrio alginolyticus 12G01]
 gi|91191243|gb|EAS77508.1| hypothetical protein V12G01_18442 [Vibrio alginolyticus 12G01]
          Length = 320

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 92/176 (52%), Gaps = 9/176 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L  +   +S++SR D L+GL N + +  SL          +   S+V FDID+FK++ND 
Sbjct: 145 LKETNQHLSEISRKDGLTGLFNRAYWEQSLKDEFAHLKVIDGPCSLVIFDIDHFKKVNDT 204

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GHP GD+VI   S  L     +    GR GGEEF      +++++A   A  LRK IE 
Sbjct: 205 YGHPTGDEVIRRTSALLRKTARSSDICGRFGGEEFTVLLPHTNQEQACYFAERLRKRIEQ 264

Query: 206 SQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + +     I+ TIS G+ E   + E  +  +  AD ALY AK++GRN+     +
Sbjct: 265 EIVKVED-FLINYTISIGVCEYKPYFETHTQWLKSADAALYRAKENGRNQTCLHEN 319


>gi|238751415|ref|ZP_04612908.1| hypothetical protein yrohd0001_16030 [Yersinia rohdei ATCC 43380]
 gi|238710473|gb|EEQ02698.1| hypothetical protein yrohd0001_16030 [Yersinia rohdei ATCC 43380]
          Length = 519

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 60/163 (36%), Positives = 86/163 (52%), Gaps = 9/163 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++   ++ D ++GL N       + SL    E  +++  DID FK IND++GH VGD+VI
Sbjct: 361 KLKFEAQTDPMTGLYNRRGLATRLESLSQLGEDFAVIALDIDLFKSINDSYGHDVGDEVI 420

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L+ Q+         + R GGEEF     G+    A  +AN LR  +E  +I     P 
Sbjct: 421 KQLAIQIRDSSRDSDILCRSGGEEFLMLLPGTRPNVAIQVANRLRNKVETMEI-----PG 475

Query: 216 IH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IH ITIS G+A    +      + RAD+ALY AK++GRNRV  
Sbjct: 476 IHPITISLGVAYWNGESMPEEALKRADEALYRAKENGRNRVEI 518


>gi|253700790|ref|YP_003021979.1| diguanylate cyclase with GAF sensor [Geobacter sp. M21]
 gi|251775640|gb|ACT18221.1| diguanylate cyclase with GAF sensor [Geobacter sp. M21]
          Length = 713

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 83/176 (47%), Gaps = 9/176 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
            E+     R  QLS  D L+GL N     + L             L+++F D+D+FK  N
Sbjct: 500 TEVLEESERFEQLSVTDALTGLYNRRFLKNRLEEELNRSIRQGLNLTVIFIDLDFFKNYN 559

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD  +   ++ +         V R GGEEF A   G+S+ EA I+A  +R  I
Sbjct: 560 DLCGHLAGDDALRITAEIIKASLRDMDIVARYGGEEFCAVLPGTSKVEAMIVAERIRSEI 619

Query: 204 ENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           E  +    S  P + +T S G+A         + +++ +D ALY AK  GRNR+V 
Sbjct: 620 EREKFPGESEIPQVRLTASLGVASFPEDGRTFTALVHASDVALYEAKAGGRNRIVA 675


>gi|313202471|ref|YP_004041129.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. MP688]
 gi|312441787|gb|ADQ85893.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. MP688]
          Length = 936

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 85/181 (46%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
             + EL     R+  L+  D L+ L N + F   +           +K  ++  D+D+FK
Sbjct: 491 RDITELVAYRERVYYLAYYDSLTNLPNRTLFNDRISQVLMEAQWSKQKFGVMVLDLDHFK 550

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            IND+ GH VGD+++   +D+L +   T   V R+GG+EFA       +  + A +AN +
Sbjct: 551 SINDSLGHLVGDELLCATADRLQMAIRTYDTVARMGGDEFAILLPDIRKPDDLATIANKI 610

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            ++I   Q     G  + I+ S GIA      E    +   AD A+Y AK  GR+    +
Sbjct: 611 VQVIA--QPFHIQGKELFISTSVGIATYPLDGEDQEALYKCADAAMYHAKSMGRSNYQFY 668

Query: 259 S 259
           S
Sbjct: 669 S 669


>gi|222111019|ref|YP_002553283.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Acidovorax ebreus TPSY]
 gi|221730463|gb|ACM33283.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Acidovorax ebreus TPSY]
          Length = 1294

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 11/181 (6%)

Query: 94   FISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNF 146
                 ++ +++  D L+GL N       L +         ++L + + D+D FK +ND  
Sbjct: 834  RAQERQLERMAHYDALTGLPNRVMLERRLRAGMEHSRARGQQLGVAYLDLDGFKPVNDRL 893

Query: 147  GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN- 205
            GH  GD+++  ++++L         V RLGG+EF     G     A      L  ++E+ 
Sbjct: 894  GHAAGDRLLVVVAERLKRALRLTDSVARLGGDEFVILLSG--LAHAEECERRLHTVMESV 951

Query: 206  SQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            +      G  + +T S G       E    T++  ADQA+Y AK++GRNR   F   E  
Sbjct: 952  AAPYTLDGERVLVTASIGYTLYPDDEADADTLLRHADQAMYAAKQAGRNRFHGFDAAEER 1011

Query: 265  T 265
             
Sbjct: 1012 A 1012


>gi|171320408|ref|ZP_02909444.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
 gi|171094358|gb|EDT39429.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
          Length = 520

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 60/210 (28%), Positives = 92/210 (43%), Gaps = 15/210 (7%)

Query: 63  YILVENLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSA 117
           Y    + ++ I S    L LG++  S+L     ++   +   +  L+R D L+GL N   
Sbjct: 298 YAAWYDRAIPIGSAMAVLALGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRM 357

Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
              +L     +       LS++F D+D+FK+ ND  GH  GD  +A +   +      P 
Sbjct: 358 LDVTLAREWRRAARSQHALSLLFVDVDHFKRYNDTQGHQAGDDALAAVGRCIAGCLRRPA 417

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--R 227
            +  R GGEEF           A  +A  +R  I +  I   +G S  +T S G+     
Sbjct: 418 DYAARYGGEEFVVVLPNVDTNGAVTIAEAIRTGILDLGIRHDTGVSGRLTASIGVTTCYP 477

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              + I   +  AD ALY AK  GRN+VV 
Sbjct: 478 ERDDSIQAALKLADDALYRAKACGRNQVVV 507


>gi|171057221|ref|YP_001789570.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Leptothrix cholodnii SP-6]
 gi|170774666|gb|ACB32805.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Leptothrix cholodnii SP-6]
          Length = 784

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 10/183 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           E   S+  I QL+  D L+GL N +   ++L             L+++F D+D FK +ND
Sbjct: 319 ERERSHAHIHQLAYYDGLTGLPNRALLQANLARAITQAQQDGTTLALLFIDLDRFKDVND 378

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH VGD+++  ++ +L         V RL G+EF         ++A   A  +++ + 
Sbjct: 379 SHGHAVGDELLREVAQRLAGEVRDRSLVCRLAGDEFVVVLPHCGVEQARHTAERVQQALA 438

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
              I +     +      G+A        +  ++  AD A+Y AKK GR  +  +    N
Sbjct: 439 R-PITVGD-LDLTTGACLGVAMYPDDGSDLDRLLRHADAAMYQAKKDGRGGLHFYRAEMN 496

Query: 264 NTC 266
              
Sbjct: 497 RAA 499


>gi|330829572|ref|YP_004392524.1| PAS/PAC sensor-containing diguanylate cyclase [Aeromonas veronii
           B565]
 gi|328804708|gb|AEB49907.1| Diguanylate cyclase with PAS/PAC sensor [Aeromonas veronii B565]
          Length = 429

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 62/178 (34%), Positives = 89/178 (50%), Gaps = 7/178 (3%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
            S + EL     ++ Q S  D L+GL N   F             ++    ++  D+D F
Sbjct: 249 SSDITELHQLKEQLHQQSVRDGLTGLYNRRFFFEMCEKNLSLDMRHHLTSVLMVLDVDQF 308

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND FGHP+GD  +  L   +  V  +   + R+GG+EFA     ++   AA LA  L
Sbjct: 309 KCINDRFGHPLGDSALVHLGRVMQSVLRSEDVLARIGGDEFAILLPNTTLSAAASLAERL 368

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R  +  S + +  G  + ITISAG+ E    E + ++  RADQ LY AK+SGRN V C
Sbjct: 369 RLQVMQSPLPLPDGDKLVITISAGLVENGEGELMESLYARADQMLYQAKQSGRNCVAC 426


>gi|322831728|ref|YP_004211755.1| diguanylate cyclase [Rahnella sp. Y9602]
 gi|321166929|gb|ADW72628.1| diguanylate cyclase [Rahnella sp. Y9602]
          Length = 520

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 119/246 (48%), Gaps = 21/246 (8%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           M+ + +   + I T+  +  +F+    LT +       + + +  + S  +S  +  I+ 
Sbjct: 277 MLLYHVMMQVLIYTLPIVILVFICIWLLTRYISRPLRQLASKADTMDSHDVSEEIQQINA 336

Query: 88  S----------ILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLGSY---NEKLSI 131
                      +L+ + + + RI QL   +  D ++GLLN   F  ++      + ++++
Sbjct: 337 WYYEASKLKTVMLQGIRLLHQRIEQLSTEAHTDPMTGLLNRRGFYEAVDKQLKESSRVAV 396

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK++ND FGH VGD+VI  L+  ++        + R+GGEEF     G+S  +
Sbjct: 397 ITLDIDHFKKVNDTFGHDVGDRVITQLARHILSNSREGDLLCRMGGEEFLLLLPGASLTQ 456

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250
           A  LA  LRK +E  Q   +      +TIS G+      K  I   +  AD+ALY AK  
Sbjct: 457 ATGLAERLRKQVEMQQFEGAG----QVTISLGVTLFYPGKANIDGALKTADKALYQAKNK 512

Query: 251 GRNRVV 256
           GRN VV
Sbjct: 513 GRNCVV 518


>gi|296123116|ref|YP_003630894.1| diguanylate cyclase [Planctomyces limnophilus DSM 3776]
 gi|296015456|gb|ADG68695.1| diguanylate cyclase [Planctomyces limnophilus DSM 3776]
          Length = 650

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)

Query: 42  VIFIANIF--------LFYIGLTPFYGLEYILVENLSLVI-------ISITISLLLGYIS 86
           V+F++NI         LF + L+       ++++    ++       ++ T + +  +++
Sbjct: 265 VVFLSNIEERCRQAAELFNVSLSHLQNSADLMIQANEQLVQLALREHVASTQASIRQHVA 324

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
               +EL      + Q +  D L+G+ N   F   L           + L+++F D+D+F
Sbjct: 325 EQEKRELETRNRELQQQALHDPLTGVHNRKFFDEVLLREVHRCVRAAQPLAVIFIDVDHF 384

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND FGH  GD+V+  ++            + R GGEEF       SE+    LA  +
Sbjct: 385 KNVNDTFGHQFGDQVLKRVAQIFSETVRVADTLARFGGEEFVVLVSQPSEKGVERLAERI 444

Query: 200 RKIIENSQINISSGPSIHITISAG--IAERCHKEP--ISTIIYRADQALYVAKKSGRNRV 255
           R+ +E       S P + IT+S G  IA     E      +I  AD+ LY AK++GRNR 
Sbjct: 445 RENVEKEAFRFGSTP-VKITVSVGAAIAIPRRGETGIGDRLIAVADECLYEAKRNGRNRT 503

Query: 256 VC 257
           + 
Sbjct: 504 IL 505


>gi|217419172|ref|ZP_03450679.1| diguanylate cyclase [Burkholderia pseudomallei 576]
 gi|217398476|gb|EEC38491.1| diguanylate cyclase [Burkholderia pseudomallei 576]
          Length = 499

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 13/196 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------- 125
           + ++   ++  Y++ S+ ++   +   +++L+  D L+GL N  A   +L          
Sbjct: 300 VFALIFVVMSAYLAHSLWRK-STAEAALARLAGTDSLTGLYNRRALDETLEREWRRAVGG 358

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAA 184
           +  L+I+F DID+FK+ ND +GH VGD+V+A +S  +          V R GGEEF    
Sbjct: 359 DRPLAILFVDIDHFKRYNDTYGHQVGDEVLATVSRCIAQQAARLGDVVARYGGEEFVVVL 418

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRA 240
             +    A ++A  +R  +    I         +T+S G+A           I+ I+  A
Sbjct: 419 PDTPRGGALVVAERVRLGVRMLGIEHEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAA 478

Query: 241 DQALYVAKKSGRNRVV 256
           DQALY AK  GRNRVV
Sbjct: 479 DQALYQAKADGRNRVV 494


>gi|126443971|ref|YP_001062835.1| putative transmembrane transcriptional sensor regulator
           [Burkholderia pseudomallei 668]
 gi|134282461|ref|ZP_01769165.1| diguanylate cyclase [Burkholderia pseudomallei 305]
 gi|126223462|gb|ABN86967.1| putative transmembrane transcriptional sensor regulator
           [Burkholderia pseudomallei 668]
 gi|134246018|gb|EBA46108.1| diguanylate cyclase [Burkholderia pseudomallei 305]
          Length = 506

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 13/196 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------- 125
           + ++   ++  Y++ S+ ++   +   +++L+  D L+GL N  A   +L          
Sbjct: 307 VFALIFVVMSAYLAHSLWRK-STAEAALARLAGTDSLTGLYNRRALDETLEREWRRAVGG 365

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAA 184
           +  L+I+F DID+FK+ ND +GH VGD+V+A +S  +          V R GGEEF    
Sbjct: 366 DRPLAILFVDIDHFKRYNDTYGHQVGDEVLATVSRCIAQQAARLGDVVARYGGEEFVVVL 425

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRA 240
             +    A ++A  +R  +    I         +T+S G+A           I+ I+  A
Sbjct: 426 PDTPRGGALVVAERVRLGVRMLGIEHEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAA 485

Query: 241 DQALYVAKKSGRNRVV 256
           DQALY AK  GRNRVV
Sbjct: 486 DQALYQAKADGRNRVV 501


>gi|89901413|ref|YP_523884.1| PAS/PAC sensor-containing diguanylate cyclase [Rhodoferax
           ferrireducens T118]
 gi|89346150|gb|ABD70353.1| diguanylate cyclase with PAS/PAC sensor [Rhodoferax ferrireducens
           T118]
          Length = 678

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 12/180 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S + E   S  R+  L+  D L+ L N + F   L            +L+++F D+D FK
Sbjct: 493 SDISERKASEVRMQHLAHFDVLTNLPNRALFSDRLRQAIAKARRDKTQLALMFMDLDRFK 552

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
            +ND  GH VGD ++  ++ +L+         V R+GG+EF        + Q A ++A  
Sbjct: 553 PVNDQLGHQVGDLLLQEVARRLLDCVRRESDTVARIGGDEFVVMLPDLETVQAATLVAEK 612

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   + N    I     IHI+ S GIA    H +  + ++  AD A+Y+AK++GRNRV  
Sbjct: 613 ILAAL-NLVFEIGE-HRIHISSSIGIAIFPEHGQDENHLLKSADAAMYLAKENGRNRVQV 670


>gi|332992852|gb|AEF02907.1| GGDEF/GAF domain-containing protein [Alteromonas sp. SN2]
          Length = 496

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 16/236 (6%)

Query: 36  SIFIATVIFIANIFLFY---IGLTPFYGLEYIL--VENLSLVIISITISLLLGYISGSIL 90
           SI  A+++    IF F    I  +P+    + +  ++ ++ ++ +   +           
Sbjct: 250 SILCASIVLDNGIFGFIGCDITGSPYTWKNHDVKYLQRIAQMLANTLQNAHNERALYKAQ 309

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIN 143
           +EL  +  ++++L+ ID L+G+ N   F  +L    E        LS++F D+D+FK  N
Sbjct: 310 QELIEANAKLAKLANIDGLTGIANRRLFDDTLQRDIERSVLSKTPLSLLFIDVDHFKNYN 369

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD  +  +++ +     G    V R GGEEFA     ++   A  +A  +R+ 
Sbjct: 370 DCYGHVAGDDALISVAEIIKKTCIGNDDAVARYGGEEFAVIMPSTNLSAALKVAERIRRN 429

Query: 203 IENSQINIS-SGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRV 255
           IE + I    S  +  +T S G+A      P+  +  I +AD ALY+AK  GRNRV
Sbjct: 430 IEQAAIPFKLSAYNNRLTASLGVATMAFDHPVCPNEFIKQADAALYLAKSLGRNRV 485


>gi|319427966|gb|ADV56040.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella putrefaciens 200]
          Length = 1502

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 11/186 (5%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            + + E   +   +  L+  D L+GL N + F   L          N  ++++F D+D FK
Sbjct: 1056 TDITERKKAEQDLRFLASFDTLTGLPNRTLFQDRLNHAITQAHRANNIVALLFLDLDRFK 1115

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDL 199
             IND+ GH VGD ++   + +L         V RLGG+EF     G ++ +AA +++  +
Sbjct: 1116 HINDSMGHHVGDLLLKAAAKRLQNAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKV 1175

Query: 200  RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             +  +     +    S+ I+ S GI+   +  +   ++I  AD A+Y AK  GRN    +
Sbjct: 1176 LRAFQT--PFLLEDKSLTISTSIGISLYPNDADNADSLIKFADTAMYHAKSLGRNNFQFY 1233

Query: 259  SDIENN 264
            +   N 
Sbjct: 1234 THKLNE 1239


>gi|288554460|ref|YP_003426395.1| putative signaling protein [Bacillus pseudofirmus OF4]
 gi|288545620|gb|ADC49503.1| probable signaling protein [Bacillus pseudofirmus OF4]
          Length = 634

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 10/176 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
            +  +  RI   +  D L+GL N       L          N  L++++ D+D FK +ND
Sbjct: 191 RINQARKRIEHQAYHDALTGLPNRYHIEEYLKRSIEYAKVNNSSLTLLYLDLDRFKLVND 250

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD ++  ++++L         +GR GG+EF       +E+E   +A  +   + 
Sbjct: 251 LLGHQVGDLLLKEVAEKLSQTICENGMIGRQGGDEFLIVLEDMNEEEVRAIAGRILDCL- 309

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            S   + +G    I+ S GI+        I +++  AD A+Y+AK+ G+N    +S
Sbjct: 310 -SYPFVYAGKEFFISPSIGISMFPKDGNDIESMMKNADTAMYMAKERGKNNFQFYS 364


>gi|171058506|ref|YP_001790855.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Leptothrix cholodnii SP-6]
 gi|170775951|gb|ACB34090.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptothrix cholodnii SP-6]
          Length = 1069

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 10/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + +   S  RI  L+  D L+ L N +  I  L           +K++++F D+D FK 
Sbjct: 610 DITDRKESERRIRFLAEHDVLTELPNRALCIERLRLALQQARRTGQKVAVLFIDLDRFKN 669

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           IND+ GH VGD ++  ++ +LV        V RLGG+EF     G +  +E A +    R
Sbjct: 670 INDSLGHHVGDGLLRSVAQRLVDGVRAGDTVSRLGGDEFVVVLNGLADIEEVAHVVEQ-R 728

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I    Q +   G  IH++ S GI+      + I  ++ +AD A+Y AK  GRN    F+
Sbjct: 729 LIPRVRQPHGVQGAEIHVSCSVGISVFPDDAQDIDELMRQADVAMYQAKAQGRNGAQFFT 788

Query: 260 DIENNTC 266
              N   
Sbjct: 789 AEMNQRA 795


>gi|161525475|ref|YP_001580487.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Burkholderia multivorans ATCC 17616]
 gi|160342904|gb|ABX15990.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia multivorans ATCC 17616]
          Length = 935

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 111/226 (49%), Gaps = 20/226 (8%)

Query: 58  FYGLEYILVENLSLVIISITISL---LLGYISG-----SILKELFISYNRISQLSRIDCL 109
           ++G  +   +N S     +TIS    + G+I       S +  L  +  ++ +++  D L
Sbjct: 333 WHGELWCRRKNGSQFAALLTISAVPDMQGHIEHYVAMFSDITALKENQQQLERVAHYDLL 392

Query: 110 SGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GL N       L             L++VF D+D FK++ND  GH VGDK+++ LS ++
Sbjct: 393 TGLPNRLLLGDRLKQAIRQTRRRGMHLAVVFIDLDGFKEVNDQHGHAVGDKLLSVLSRRM 452

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITIS 221
             V      + RLGG+EF A  +   E   ++    L ++IE +   +  G ++  ++ S
Sbjct: 453 TQVLREGDTLARLGGDEFVAVLVDLPENSFSL--PILDRLIEVAAQPVPIGDALCEVSAS 510

Query: 222 AGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            G++     E I    ++ +ADQA+Y AK++G+NR   F   ++ T
Sbjct: 511 IGVSYYPQGEDIDADQLLRQADQAMYRAKQAGKNRYHVFDSEKDRT 556


>gi|120553290|ref|YP_957641.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120323139|gb|ABM17454.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 523

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 61/174 (35%), Positives = 78/174 (44%), Gaps = 8/174 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNF 146
                 + + S  D L+GL N   F              +  L ++ FDID+FK  ND  
Sbjct: 349 LALRAELQRFSYEDSLTGLKNRRYFDELFRHEREVSARSDRPLCLLIFDIDHFKLFNDCH 408

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+ +  + D L   F     V R GGEEF+    G+S  EA   A  LR  I   
Sbjct: 409 GHEAGDQALRMVGDVLATCFRGSDTVCRYGGEEFSVLMPGASLDEARQRAEQLRAAISAE 468

Query: 207 QINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
            +         +TISAGIA      P    +   ADQALY AK++GRNRVV  S
Sbjct: 469 PVEHRGENLGSLTISAGIACWRENCPEFDELFRAADQALYQAKETGRNRVVAAS 522


>gi|118593567|ref|ZP_01550944.1| GGDEF domain protein [Stappia aggregata IAM 12614]
 gi|118433785|gb|EAV40445.1| GGDEF domain protein [Stappia aggregata IAM 12614]
          Length = 307

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 114/246 (46%), Gaps = 9/246 (3%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYIL-VENLSLVIISITISLL- 81
           P   +++  + + +F  T++ +       + L+   G    L ++ ++LV I + ISL+ 
Sbjct: 61  PVPALLWCGLVYPVFPTTILTLCIGVWGLVILSNGLGDSASLQLDVMTLVSIRLGISLVA 120

Query: 82  LGYISGSILKELFISY-NRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDI 136
           L  I  S + +   +   R+  L+  D L+ +LN +AF               +++  D+
Sbjct: 121 LAPIMLSCVTQNRNALVGRLQYLATHDQLTNVLNRNAFREEAARRLALGTSGFALLMVDL 180

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK +ND  GH  GD V+     ++         +GR+GGEEFA       + +A   A
Sbjct: 181 DDFKAVNDTHGHATGDTVLVNFVHRVKNTLPPGSLLGRMGGEEFAVLIPDCRQVDAVAEA 240

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254
            ++R+ +    +    G  + +T S G+    H   + + T++  AD+  Y+AKK GRNR
Sbjct: 241 ENIRQSVGTEPVPAGDGKEVRVTASLGVVAVEHGDADSLDTLLAEADRLCYLAKKRGRNR 300

Query: 255 VVCFSD 260
           V    +
Sbjct: 301 VEAIEE 306


>gi|313683320|ref|YP_004061058.1| diguanylate cyclase with extracellular sensor [Sulfuricurvum
           kujiense DSM 16994]
 gi|313156180|gb|ADR34858.1| diguanylate cyclase with extracellular sensor [Sulfuricurvum
           kujiense DSM 16994]
          Length = 754

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 102/221 (46%), Gaps = 23/221 (10%)

Query: 47  NIFLFYIGLTPFYGLEYILVENL---SLVIISITISLLLGYISGSILKELFISYNRISQL 103
            I   YI +T    ++Y  V  +   +L IISI I             E+   + R+ ++
Sbjct: 546 RILNRYIAITYEDRVDYGWVYGITVGALFIISIFIYRQF---------EMGKYHKRLLKM 596

Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  D L+GL+N       L              S++  D+DYFK++ND +GH +GDK + 
Sbjct: 597 ATTDPLTGLVNRIRLDEKLAECHQFYQRTGRHFSVIIIDLDYFKRVNDTYGHLIGDKTLV 656

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +S  L     +   VGR GGEEF      ++ +    LA  ++ +IE +          
Sbjct: 657 NISKILSDNIRSIDMVGRWGGEEFMIICPETTSEGGKQLAEKIQSVIERNDFPYIH---- 712

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +T S GI+E    + I  I+ RAD ALY AK+ GRNRV  
Sbjct: 713 TMTCSFGISESREGDRIENIVGRADSALYRAKEEGRNRVCL 753


>gi|311108951|ref|YP_003981804.1| diguanylate cyclase [Achromobacter xylosoxidans A8]
 gi|310763640|gb|ADP19089.1| diguanylate cyclase, GGDEF domain protein 19 [Achromobacter
           xylosoxidans A8]
          Length = 533

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 62/255 (24%), Positives = 109/255 (42%), Gaps = 15/255 (5%)

Query: 20  ESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS 79
           E+  P   +    + +++ +  ++ +    L      P   L  ++  +           
Sbjct: 274 ETLRPLQSLTSRIVLYALPVGLIMLLVIYLLGRWISRPLEELAQVIERDQPGASAGDLGK 333

Query: 80  LLLGYISGSILKE-----LFISYNRISQLSR---IDCLSGLLNHSAF---ISSLGSYNEK 128
           +   Y   + L+            RI +LS     D ++GL+N       +++L    + 
Sbjct: 334 IKSWYYEAARLRNAVTMSQNSQTRRIDKLSSDTITDPMTGLINRRGLALQVTALQRAQQP 393

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            + +  D+D+FK +ND FGH  GD+V+  L+  L           R+GGEEF      +S
Sbjct: 394 FAALALDLDHFKLVNDTFGHAAGDQVLIALAGILRTCIRAEDAPCRVGGEEFLILMPDAS 453

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVA 247
              A  +A  +R    +  +    G    +T+S GIA     +  I  ++ +ADQALY A
Sbjct: 454 RDTAGKVAERIRAATASQVMPQGVGQ---VTVSIGIALWPSDDPDIDKVLAKADQALYRA 510

Query: 248 KKSGRNRVVCFSDIE 262
           K SGR+RV  +S +E
Sbjct: 511 KHSGRDRVEAWSAVE 525


>gi|283781774|ref|YP_003372529.1| diguanylate cyclase and metal dependent phosphohydrolase [Pirellula
           staleyi DSM 6068]
 gi|283440227|gb|ADB18669.1| diguanylate cyclase and metal dependent phosphohydrolase [Pirellula
           staleyi DSM 6068]
          Length = 779

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 89/185 (48%), Gaps = 11/185 (5%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNE---KLSI 131
           ++LL   S  I   L      + + +  D L+ + N + F       + S+ +     S+
Sbjct: 397 AVLLHDASSRIT--LEQRVQTLHEKATRDPLTQVANRAEFDEIHATYVQSHRDRRLPFSL 454

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DIDYFK+INDNFGH  GD+V+   +  L         V R GGEEF    +      
Sbjct: 455 IICDIDYFKRINDNFGHQAGDEVLQSFAALLRRHTRPGDLVARYGGEEFVLLCIDCDNTA 514

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A   A +LR+ +    +      S  IT S G+ E  + +   T++ RAD+ALY AK+SG
Sbjct: 515 ATRRAEELRRELAEFPMAALGNKS--ITASFGVTELQNGDTPETMLRRADRALYQAKESG 572

Query: 252 RNRVV 256
           RN V+
Sbjct: 573 RNTVI 577


>gi|238562057|ref|ZP_00441046.2| diguanylate cyclase [Burkholderia mallei GB8 horse 4]
 gi|238523405|gb|EEP86844.1| diguanylate cyclase [Burkholderia mallei GB8 horse 4]
          Length = 499

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 13/196 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------- 125
           + ++   ++  Y++ S+ ++   +   +++L+  D L+GL N  A   +L          
Sbjct: 300 VFALIFVVMSAYLAHSLWRK-STAEAALARLAGTDSLTGLYNRRALDETLEREWRRAVGG 358

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAA 184
           +  L+I+F DID+FK+ ND +GH VGD+V+A +S  +          V R GGEEF    
Sbjct: 359 DRPLAILFVDIDHFKRYNDTYGHQVGDEVLATVSRCIAQQAARLGDVVARYGGEEFVVVL 418

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRA 240
             +    A ++A  +R  +    I         +T+S G+A           I+ I+  A
Sbjct: 419 PDTPRGGALVVAERVRLGVRMLGIEHEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAA 478

Query: 241 DQALYVAKKSGRNRVV 256
           DQALY AK  GRNRVV
Sbjct: 479 DQALYRAKADGRNRVV 494


>gi|254413672|ref|ZP_05027442.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179779|gb|EDX74773.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1341

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 72/171 (42%), Gaps = 8/171 (4%)

Query: 97   YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
               +SQ S  D L+GL N      SL         +   + I+  DID+FK  ND FGH 
Sbjct: 1170 RETLSQQSIRDALTGLFNRRYMEESLEREIHRAQRHQRPMGIIMLDIDHFKHFNDTFGHE 1229

Query: 150  VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
             GD V+  L   L           R GGEE       +S  +    A  +R  ++  QI 
Sbjct: 1230 AGDAVLRELGIFLQRSIRASDIACRYGGEELMLILPDASLADTKQRAEQIRHDVKGLQIE 1289

Query: 210  ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                    I IS G+A    H      +I  AD+ALY AK  GR+RVV  S
Sbjct: 1290 YHHKLLDAIAISVGVAAFAEHGSTAQELIAAADRALYQAKAQGRDRVVTAS 1340


>gi|205352436|ref|YP_002226237.1| hypothetical protein SG1195 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205272217|emb|CAR37076.1| predicted phage protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326627490|gb|EGE33833.1| putative phage protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 381

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 128/266 (48%), Gaps = 28/266 (10%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY------GLEYILVE----- 67
           + S+  + F++++ + F+  ++ ++ +  +   Y  L           L  +L       
Sbjct: 115 MWSYCSYFFIVWWQLPFAWPLSVILMLTALAALYYHLPALLFFIVPLWLTALLASVQLNQ 174

Query: 68  --NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDCLSGLLNH 115
             N+  +++ +T++ +L Y   I      E ++ Y        R+  ++  D L+G  N 
Sbjct: 175 YVNIRFLLVWLTLTTILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANR 234

Query: 116 SAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MF 171
            +  S LG      E  +++  D+DYFK  ND++GH  GD  +A ++  +     TP   
Sbjct: 235 RSMESFLGDALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVAGVMKRSVRTPADL 294

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKII-ENSQINISSGPSIHITISAGIAERCHK 230
           V R GGEEF      SS  EAA++A  ++  + E +  + +S  S  +T+S GI      
Sbjct: 295 VARYGGEEFVVVLPSSSLNEAALVAERIQTNLRETAMPHAASAVSETVTVSMGITLSTAG 354

Query: 231 EPISTIIYRADQALYVAKKSGRNRVV 256
           + ++ II RAD+ALY AK+ GRNR V
Sbjct: 355 DTVTGIIARADEALYRAKQQGRNRWV 380


>gi|193214078|ref|YP_001995277.1| diguanylate cyclase/serine/threonine protein kinase [Chloroherpeton
           thalassium ATCC 35110]
 gi|193087555|gb|ACF12830.1| diguanylate cyclase and serine/threonine protein kinase with TPR
           repeats [Chloroherpeton thalassium ATCC 35110]
          Length = 606

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 85/176 (48%), Gaps = 8/176 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           +L+ L      + +L   D L+GL N   F             Y   LSI   DID+FK+
Sbjct: 432 LLERLREQAETLERLVTYDGLTGLANRRHFDEQFEYEFRRTRRYKRPLSIAMSDIDFFKK 491

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +NDNF H VGD+V+  ++            V R GGEEF      ++++ A   A  +RK
Sbjct: 492 VNDNFSHQVGDEVLKKVASIFRENVRAGDLVARYGGEEFVFIFTETNKESAIRAAEKIRK 551

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            IE+   + +    + +TIS G+AE    +    +I  AD  LY AK++GRN+V  
Sbjct: 552 AIEDYDWS-NVHAGLKVTISIGVAEDAGFDGCDELIAAADSKLYEAKRNGRNQVRA 606


>gi|134283795|ref|ZP_01770492.1| diguanylate cyclase [Burkholderia pseudomallei 305]
 gi|134244783|gb|EBA44880.1| diguanylate cyclase [Burkholderia pseudomallei 305]
          Length = 454

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 102/228 (44%), Gaps = 10/228 (4%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           ++A  +F    F+   G+              S   +   ++  +    G +L+EL  + 
Sbjct: 228 WLAHAVFAGGFFMLSFGVVQALMTTRSFATVYSQQDLMARLAESMARTEG-VLQELKRTN 286

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
            ++  L+  D L+G  N   FI  + S   +        S++  D+D FK INDN+GH V
Sbjct: 287 QKLEHLATTDPLTGASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFKTINDNYGHQV 346

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+     Q +V       + R+GGEEF           A+ +A  +R  I N+   I
Sbjct: 347 GDVVLRNFVRQCLVAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRTTIANASFGI 406

Query: 211 SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV 
Sbjct: 407 -DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 453


>gi|323492067|ref|ZP_08097229.1| putative sensory box/GGDEF family protein [Vibrio brasiliensis LMG
           20546]
 gi|323313628|gb|EGA66730.1| putative sensory box/GGDEF family protein [Vibrio brasiliensis LMG
           20546]
          Length = 325

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 98/179 (54%), Gaps = 10/179 (5%)

Query: 91  KELFISYNR---ISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQI 142
           +E+ I+  +   + +L+  D L+G+LN  AF   L         + LS +  DID+FK+I
Sbjct: 129 REITIARQQELELRKLADTDELTGILNRRAFTLQLEQDFNNPSGKGLSCLMIDIDHFKEI 188

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD+VI  ++           ++GRLGGEEF      ++  +A  +A  +R+ 
Sbjct: 189 NDQVGHLSGDEVITQVAHICRDTIRGSDYIGRLGGEEFGVVLTHTNAIQAYDIAERIRES 248

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           IE++  ++     +  T+S GIAE   +   +  ++ +AD+A+Y +K++GRN+V  + D
Sbjct: 249 IESTPCHVDEHIILP-TVSIGIAELNSQVSSVRELMVQADKAMYYSKQTGRNQVTLYYD 306


>gi|227820812|ref|YP_002824782.1| putative transmembrane response regulator protein with GGDEF domain
           [Sinorhizobium fredii NGR234]
 gi|227339811|gb|ACP24029.1| putative transmembrane response regulator protein with GGDEF domain
           [Sinorhizobium fredii NGR234]
          Length = 454

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 66/268 (24%), Positives = 120/268 (44%), Gaps = 26/268 (9%)

Query: 15  HEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFY------------IGLTPFY--G 60
              N+  F   T +I F +  +  +        ++L +            +  T F+  G
Sbjct: 180 RHLNIMLFVAITAIIIFGVPLNWTVTVASLALGLYLVFQLQNPSLEKGSAVAATLFFASG 239

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +   +V   ++ I++   + LL     S + EL  +  R+ +L+R D L+G+ N    + 
Sbjct: 240 IIATVVARRTMTILA-QKTFLLELRDRSRVAELADANARLERLARTDPLTGISNRRWMME 298

Query: 121 SLGS------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVG 173
           +L             +++  DID FK +ND  GH  GD+ +  ++  +          V 
Sbjct: 299 TLDHLWSDGMERRGCAMLMCDIDEFKNLNDRLGHAEGDRCLVKVAGIIQSSVRRNRDHVA 358

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKE- 231
           R GGEEF     G  E+EA  +   +R  +E + +   +   + ++T+S G+A +   + 
Sbjct: 359 RYGGEEFLIVLPGVDEREAIAMGERIRGSVEAASLPNPASRVLPYVTLSIGVAAQRPGDE 418

Query: 232 --PISTIIYRADQALYVAKKSGRNRVVC 257
             P   +  +AD ALY+AK++GRNRVV 
Sbjct: 419 IIPPERLQNQADAALYLAKQAGRNRVVL 446


>gi|299531035|ref|ZP_07044448.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298720992|gb|EFI61936.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 534

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 61/174 (35%), Positives = 87/174 (50%), Gaps = 8/174 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHP 149
           L  +  ++    + D L+ L N  +  ++L          S+V  DID+FK++ND FGH 
Sbjct: 358 LNRNIQKLQDDVKTDPLTKLGNRRSLEAALQKLEASSQIFSVVSIDIDHFKKVNDTFGHD 417

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  L+ Q+  V        R+GGEEF      +SE  A  +A  LRK +E +   
Sbjct: 418 AGDIVLRDLAKQMKSVSRADDLPCRVGGEEFLIVLPRTSETTAVQVAERLRKQVEAAVFE 477

Query: 210 ISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
                  HITIS G+A   +    I T+I  AD+ LY AK+ GRNRV  +S  E
Sbjct: 478 GVG----HITISLGVASWPNSSSDIPTVIKYADEMLYKAKREGRNRVAVYSQSE 527


>gi|167839926|ref|ZP_02466610.1| putative transmembrane transcriptional sensor regulator
           [Burkholderia thailandensis MSMB43]
          Length = 489

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 13/196 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN------ 126
           + ++   ++  Y++ S+ ++   +   +++L+  D L+GL N  A   +L          
Sbjct: 290 VFALIFVVMSAYLAHSLWRK-STAEAALARLAGTDSLTGLHNRRALDETLEREWRRAMGG 348

Query: 127 -EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAA 184
              L+I+F DID+FK+ ND +GH VGD+V+A +S  +          V R GGEEF    
Sbjct: 349 ARPLAILFVDIDHFKRYNDTYGHQVGDEVLATVSRCIAQQAARLGDVVARYGGEEFVVVL 408

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE----PISTIIYRA 240
             +    A ++A  +R  +    I         +T+S G+A          PI+ I+  A
Sbjct: 409 PDTPRGGALVVAERVRLGVRMLGIEHEGSEVGFVTVSVGVAVWQPDGASAPPIAAIVEAA 468

Query: 241 DQALYVAKKSGRNRVV 256
           DQALY AK  GRNR+V
Sbjct: 469 DQALYQAKAGGRNRIV 484


>gi|54308933|ref|YP_129953.1| sensory box/GGDEF family protein [Photobacterium profundum SS9]
 gi|46913363|emb|CAG20151.1| hypothetical sensory box/GGDEF family protein [Photobacterium
           profundum SS9]
          Length = 326

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 105/234 (44%), Gaps = 20/234 (8%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISIT------ISLLLGYIS--GSILKELFISYNRISQL 103
           +   +P  G   ++ +NL L  +         + L +  +S        L  S  +++ L
Sbjct: 94  FSNFSPISGGSELMYQNLILTPLKSLHGDFSHVCLSVTDVSDIAKNKTHLRESNKQLTHL 153

Query: 104 SRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S  D L+ L N   +                  ++V FDID+FK++ND FGH  GD VI 
Sbjct: 154 SMTDRLTQLYNRGHWETCLAEEFERCRQTQTPSTLVMFDIDHFKKVNDTFGHVAGDGVIR 213

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +S+ L          GR GGEEF      +S +        LR+ IE +++N+    SI
Sbjct: 214 IVSNVLRRTKRQSDIAGRYGGEEFGVILPYTSSEMGQYFTERLRQRIEQARVNVDV-RSI 272

Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS---DIENNTC 266
           ++TIS G+ E           +  AD+ALY++K+SGRN+   F    + E +T 
Sbjct: 273 NVTISLGVCEWYPELRNYEQWLEHADKALYISKQSGRNQSTVFEALVEQEKDTA 326


>gi|85712929|ref|ZP_01043969.1| Signaling protein with a ligand-binding sensor domain, PAS, GGDEF
           andEAL domains [Idiomarina baltica OS145]
 gi|85693235|gb|EAQ31193.1| Signaling protein with a ligand-binding sensor domain, PAS, GGDEF
           andEAL domains [Idiomarina baltica OS145]
          Length = 1135

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 7/190 (3%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDY 138
           L   S S + E   + N + +LS  D L+GL N S F    S+L       +++ FD+D 
Sbjct: 687 LIVASFSDITERRNTENELRRLSNTDSLTGLPNRSYFQVSHSNLVRKRVAHALLLFDLDD 746

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILAN 197
           FK+IND+ GH VGD+++  ++D+L  +      + RLGG+EF       +     + +A 
Sbjct: 747 FKRINDSLGHEVGDELLCRVADRLAELGRRQDTLYRLGGDEFGILIEDNTDINVISTIAQ 806

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            +   I  +      G  I +  S GI    H       ++ +AD A+Y AK+ G N   
Sbjct: 807 QVNTEIAKA--YRIKGHEIALGSSIGIVLYPHDAHTSQELLQKADTAMYHAKQRGGNCYQ 864

Query: 257 CFSDIENNTC 266
            F+   N   
Sbjct: 865 FFNASMNENA 874


>gi|325917514|ref|ZP_08179719.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325536272|gb|EGD08063.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 992

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 8/176 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           +L  L I  +   + +  D L+GL N   F  +L             L +   DID+FK+
Sbjct: 799 LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSGRPLVLAILDIDHFKR 858

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND + H +GD V+  + + L     T     RLGGEEFA     +S  +A +L   +R 
Sbjct: 859 INDRYSHAIGDAVLHDVGELLTAAARTSDLPARLGGEEFALLLADTSLSDAQVLCERIRM 918

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  +++ +      + +T SAG+AE    +  S+++ RAD ALY AK +GR+R+  
Sbjct: 919 LF-HARADWGDVEGLQVTFSAGLAELRDDDNGSSLMQRADHALYQAKSAGRDRICV 973


>gi|313681964|ref|YP_004059702.1| diguanylate cyclase/phosphodiesterase with pas/pac and chase
           sensor(s) [Sulfuricurvum kujiense DSM 16994]
 gi|313154824|gb|ADR33502.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Sulfuricurvum kujiense DSM 16994]
          Length = 1172

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 11/189 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDY 138
           S   +     +  ++  L+  D L+GL N +              +    L++++ D+D+
Sbjct: 727 SVQDITVQKTTEEKVHWLAHFDPLTGLPNRTLLNDRVDYAIHIAENNQSSLALLYVDLDH 786

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND  GH VGD+++  ++ +++ V      + R GG+EF      +    AA +A  
Sbjct: 787 FKYINDTLGHHVGDEMLVQVASRILSVLNEADTLSRQGGDEFMILLPSADSDHAAHVAEK 846

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L + +  SQ        + +T+S GIA        ++ +   AD A+Y AK  GRN    
Sbjct: 847 LVEYV--SQPYQLQNHDLSVTLSIGIALYPIDGTNLTELSQAADAAMYRAKHDGRNCYRF 904

Query: 258 FS-DIENNT 265
           F+ +I+  +
Sbjct: 905 FAPEIQERS 913


>gi|253701124|ref|YP_003022313.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Geobacter sp. M21]
 gi|251775974|gb|ACT18555.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Geobacter sp. M21]
          Length = 869

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 11/189 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDY 138
           +   + E  ++  RI  L+  D ++ L N  + ++ LG   E       +L+++F D+D 
Sbjct: 418 TTQRMNEQELNEQRIEYLAHYDTVTKLPNRFSLMARLGQALELAKRFSSRLAVIFIDLDR 477

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILAN 197
           FK IND+ GH +GD+++  ++ +L     +   V RLGG+EF       +    AA    
Sbjct: 478 FKNINDSLGHHIGDRLLFQVAGRLQDTIRSADIVARLGGDEFVVVLPLINSNISAAHAVR 537

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +++ +  SQ        ++IT S GI+      E +  ++  AD A+Y AK +GRN   
Sbjct: 538 KIQQTL--SQGYTVESHELNITPSIGISVYPTDGETVQELMKNADLAMYHAKSAGRNSYQ 595

Query: 257 CFSDIENNT 265
            F+   N T
Sbjct: 596 FFTQEMNLT 604


>gi|150377434|ref|YP_001314029.1| diguanylate cyclase [Sinorhizobium medicae WSM419]
 gi|150031981|gb|ABR64096.1| diguanylate cyclase [Sinorhizobium medicae WSM419]
          Length = 422

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 69/270 (25%), Positives = 118/270 (43%), Gaps = 27/270 (10%)

Query: 15  HEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY--------------G 60
              N+  F   T +I FSI  +  +A   F   ++L +    P                G
Sbjct: 151 RHLNIMLFVAITAIIIFSIPLAWTVAVASFALALYLIFQLRNPMLDTGSAVAGTLFFTSG 210

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +   +V   ++ I++   + LL       + EL  +  R+ +L++ D L+G+ N    + 
Sbjct: 211 IVATVVARRTMTILA-QKTFLLELRDKRRVAELADANARLERLAKTDPLTGIANRRWMME 269

Query: 121 SLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFV 172
           +L              +++  DID FK +ND  GH  GD+ +  ++  +          V
Sbjct: 270 TLNRLWGAGAERPAGTAMLMCDIDDFKSLNDRLGHAEGDRCLVKVAGIIQSSVRRNRDHV 329

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKE 231
            R GGEEF     G+  Q A   A  +R  +E + +   +   + ++T+S G+A +    
Sbjct: 330 ARYGGEEFLVVLPGADVQAALATAERIRASVEAASLPNPASRVAPYVTLSIGVAAQGAAG 389

Query: 232 PI---STIIYRADQALYVAKKSGRNRVVCF 258
            I     +  +AD ALY+AKK+GRNRVV F
Sbjct: 390 EIIGPERLQNQADTALYLAKKAGRNRVVLF 419


>gi|330828523|ref|YP_004391475.1| GGDEF family protein [Aeromonas veronii B565]
 gi|328803659|gb|AEB48858.1| GGDEF family protein [Aeromonas veronii B565]
          Length = 383

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 69/248 (27%), Positives = 113/248 (45%), Gaps = 19/248 (7%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL 80
           +F P   ++Y  +F S+ +     I N     +         Y+L     LV++ +   +
Sbjct: 142 AFYPSWKVLYGFVFGSLLLG----IWNELYLRVDFPQL----YMLGLGCGLVVLEVGRRM 193

Query: 81  LLGYISGSILKELF--ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           L  +   +I++E        ++ QL++ D L+G+ N   F   L             LS+
Sbjct: 194 LHRWFELAIMREHENLTLLRQLDQLAKQDPLTGVANRRHFNIELDRALAHSQESGAPLSL 253

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +  D+DYFK+ ND++GH VGD  +  ++  L   V      V R GGEEF      +  Q
Sbjct: 254 ILIDVDYFKRFNDHYGHQVGDMCLKEVAQALNRAVRTPSDLVARYGGEEFMLLLPNTDRQ 313

Query: 191 EAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            AA +A  L+  + + ++   +      +T+S GIA     E  S ++ RADQALY AK 
Sbjct: 314 AAASVAQRLQDGLASLRLEHLASEVAPWVTVSQGIASNVSGEGASQLLERADQALYRAKA 373

Query: 250 SGRNRVVC 257
            GRN+   
Sbjct: 374 LGRNQFCV 381


>gi|124516000|gb|EAY57509.1| Diguanylate cyclase/phosphodiesterase [Leptospirillum rubarum]
          Length = 702

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 96/215 (44%), Gaps = 14/215 (6%)

Query: 64  ILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           I + +  ++ I + +SL+  +++     ++  L  +  ++  L+  D L+ L N +    
Sbjct: 221 IGLASFMILAIGLILSLVDSHLATRTAGLVGSLKAANEKLHYLALHDGLTRLPNRTLLED 280

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            +              S+ F D+D FK IND+ GH  GDKV+  ++ +L    G    V 
Sbjct: 281 RVDQAIRHARSGDGTFSVFFLDVDRFKPINDSLGHSTGDKVLQQMASRLSATVGPEDTVA 340

Query: 174 RLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-E 231
           R+GG+EF           +   +A  +R  +  S      G S+ +T S GI+   H   
Sbjct: 341 RIGGDEFVIVFPEKKDPGKVHEIARRIRDCVAESM--EVDGQSLSVTTSIGISLFPHDGT 398

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              T++  AD A+Y AK  G  ++  +S   N++ 
Sbjct: 399 TFRTLLASADSAMYYAKSKGPGQIQFYSGEMNDSA 433


>gi|330896910|gb|EGH28492.1| GGDEF domain-containing protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 350

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 10/226 (4%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
              + +    L P   L   + +  + + + +T  + +G++S  +  +L+   N + ++S
Sbjct: 117 ALGVLISLAALDPVVNLHGNMAQIYACLPVLVTYPIFIGWLSHQVTLKLWEHRNILRKVS 176

Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           R D L+GLLNH A+   L        +  ++  I   DID+FK IND +GH +GD V+  
Sbjct: 177 RTDSLTGLLNHGAWKDLLDLEYTSSQNAYQECVIALIDIDHFKVINDTYGHLMGDTVLQS 236

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +S+ L         +GR GG+EF      +   +A  +   LR  I+     +     + 
Sbjct: 237 ISEALTENLRDSDLIGRCGGDEFCVILPDTCLLQAKEILERLRLAIDEMTYTLH--CDLK 294

Query: 218 ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +++S GIA    +    S+ ++ AD+ALY+AK +GRNRV    D +
Sbjct: 295 VSLSIGIAAYSPEMPDASSWLHEADKALYLAKSTGRNRVASHQDAQ 340


>gi|303246080|ref|ZP_07332361.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           fructosovorans JJ]
 gi|302492476|gb|EFL52347.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           fructosovorans JJ]
          Length = 466

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 62/185 (33%), Positives = 102/185 (55%), Gaps = 13/185 (7%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132
           ++L  I+     EL     +++ L+  D L+G  N   F+            +++ +S +
Sbjct: 283 IILDDITTRKQLEL-----QLNHLATTDALTGANNLHRFLERAEEEIIRSERHDKPVSFL 337

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK IND +GH +GD V+  LS     +F      GR+GGEEFAA    ++ + A
Sbjct: 338 MLDIDHFKNINDTYGHAIGDDVLRVLSAACRKLFRKSDVFGRVGGEEFAAILPETTLEAA 397

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             +A  LR+I+   +++  +G +I  T+S GI ER + + +S ++  AD++LY AK SGR
Sbjct: 398 TQVAERLRQILAQLEVDGPNG-NISFTVSIGIVERKNGQNLSDVMRFADKSLYEAKNSGR 456

Query: 253 NRVVC 257
           N+VV 
Sbjct: 457 NKVVA 461


>gi|224368288|ref|YP_002602451.1| two domain sensory box histidine kinase (PAS/PAC domain/GGDEF
           domain protein) [Desulfobacterium autotrophicum HRM2]
 gi|223691004|gb|ACN14287.1| two domain sensory box histidine kinase (PAS/PAC domain/GGDEF
           domain protein) [Desulfobacterium autotrophicum HRM2]
          Length = 440

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 89/177 (50%), Gaps = 8/177 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            + +       + +L+  D L+G  N  +F       +     YN  L++V  DID+FK+
Sbjct: 263 DITKRKTMEKELEKLATTDPLTGAKNRRSFLNLFEKEMKRSKRYNYTLALVMIDIDHFKK 322

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           INDNFGH  GDK++  L  +   V        R GGEEF      +   +A+  A  LR 
Sbjct: 323 INDNFGHETGDKILNLLVAKCHSVLRDSDIFARWGGEEFIILLPETDLLQASSAAERLRG 382

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            +  S++  + G +I+ T+S G     +K   I  II +AD+ALY+AKK GRNR V 
Sbjct: 383 ALAQSELRTNDGTNINFTVSIGFTIFGNKNILIDEIIKKADKALYLAKKQGRNRAVF 439


>gi|120600574|ref|YP_965148.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. W3-18-1]
 gi|120560667|gb|ABM26594.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. W3-18-1]
          Length = 1511

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 11/186 (5%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            + + E   +   +  L+  D L+GL N + F   L          N  ++++F D+D FK
Sbjct: 1065 TDITERKKAEQDLRFLASFDTLTGLPNRTLFQDRLNHAITQAHRANNIVALLFLDLDRFK 1124

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDL 199
             IND+ GH VGD ++   + +L         V RLGG+EF     G ++ +AA +++  +
Sbjct: 1125 HINDSMGHHVGDLLLKAAAKRLQNAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKV 1184

Query: 200  RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             +  +     +    S+ I+ S GI+   +  +   ++I  AD A+Y AK  GRN    +
Sbjct: 1185 LRAFQT--PFLLEDKSLTISTSIGISLYPNDADNADSLIKFADTAMYHAKSLGRNNFQFY 1242

Query: 259  SDIENN 264
            +   N 
Sbjct: 1243 THKLNE 1248


>gi|146294731|ref|YP_001185155.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella putrefaciens CN-32]
 gi|145566421|gb|ABP77356.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella putrefaciens CN-32]
          Length = 1511

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 11/186 (5%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            + + E   +   +  L+  D L+GL N + F   L          N  ++++F D+D FK
Sbjct: 1065 TDITERKKAEQDLRFLASFDTLTGLPNRTLFQDRLNHAITQAHRANNIVALLFLDLDRFK 1124

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDL 199
             IND+ GH VGD ++   + +L         V RLGG+EF     G ++ +AA +++  +
Sbjct: 1125 HINDSMGHHVGDLLLKAAAKRLQNAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKV 1184

Query: 200  RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             +  +     +    S+ I+ S GI+   +  +   ++I  AD A+Y AK  GRN    +
Sbjct: 1185 LRAFQT--PFLLEDKSLTISTSIGISLYPNDADNADSLIKFADTAMYHAKSLGRNNFQFY 1242

Query: 259  SDIENN 264
            +   N 
Sbjct: 1243 THKLNE 1248


>gi|313682226|ref|YP_004059964.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313155086|gb|ADR33764.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 408

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 60/213 (28%), Positives = 96/213 (45%), Gaps = 13/213 (6%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112
           I +T  Y     L   ++  +      LL     G   + L  +Y  + + S ID L+ +
Sbjct: 183 ISITLPYNRYASLWPRIAGYLAVTVTGLLFIQFFG---RRLAKAYRMLEEQSIIDPLTEI 239

Query: 113 LNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N   F+             +  ++++  DIDYFK  ND +GH  GD  +  +++ +   
Sbjct: 240 PNRRFFMKRAKEEFQRAERDHTPIALIMVDIDYFKGFNDRYGHIEGDVTLKTVAETMKQQ 299

Query: 166 -FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAG 223
               P  + R GGEEF      ++ + AA +A  LR  IE  +IN  +      +TIS G
Sbjct: 300 LRRPPDCIARYGGEEFVIMLPNTTPEGAAKVAELLRTEIEALKINNEASKCADVVTISLG 359

Query: 224 IAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
           +A   H        + +AD+ALY AK++GRNR 
Sbjct: 360 VATAPHDGVSFEIQLKQADEALYAAKQNGRNRC 392


>gi|217077910|ref|YP_002335628.1| ggdef domain protein [Thermosipho africanus TCF52B]
 gi|217037765|gb|ACJ76287.1| ggdef domain protein [Thermosipho africanus TCF52B]
          Length = 1338

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 60/170 (35%), Positives = 88/170 (51%), Gaps = 14/170 (8%)

Query: 100  ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
            +   S +D L+ L     FI  L         +NEKLS+V  D+D+FK+IND +GH +GD
Sbjct: 1173 LKLRSFLDPLTKLYTRYYFIEKLSQMFRRAIKFNEKLSVVMCDLDHFKKINDTYGHLIGD 1232

Query: 153  KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            +V+  ++  L         +GR GGEEF      SS ++A  +A  +RK IE        
Sbjct: 1233 EVLKKIAQILRRNVRLTDVIGRYGGEEFIIFLPYSSSKQAYEIAERIRKKIEKL-----D 1287

Query: 213  GPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                 +T+S GIA            +I+ AD ALY AK++GRN+VV F++
Sbjct: 1288 EFPFKVTMSFGIASYPETKVNSPDELIHHADDALYKAKETGRNKVVMFNE 1337


>gi|86359680|ref|YP_471572.1| putative cellulose biosynthesis transcriptional regulator protein
           [Rhizobium etli CFN 42]
 gi|86283782|gb|ABC92845.1| putative cellulose biosynthesis transcriptional regulator protein
           [Rhizobium etli CFN 42]
          Length = 539

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 67/210 (31%), Positives = 105/210 (50%), Gaps = 15/210 (7%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYN----RISQLSRIDCLSGLLNHS 116
           L  IL     L+I++ T+ ++L      ++ +L          +   ++ D L+GL N  
Sbjct: 305 LTQILALCAGLLILA-TLVMMLAARGLRLIDKLARDRETLVGELRNAAQTDLLTGLYNRR 363

Query: 117 AFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            F        +     +  +S+V FD+D+FK+IND  GH  GD V+  ++      F + 
Sbjct: 364 GFDVAASALLTQAEHGSHWISVVLFDLDHFKKINDIHGHDAGDAVLRHVAGVARQNFRSF 423

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
             + R GGEEF A    S+   AAI+A  +R+ IE ++I ++SG  + +T S G A R +
Sbjct: 424 DLLVRHGGEEFLALLPDSTPGNAAIVAERVRQAIEAAEIPLASGDLLKVTASFGCAGRAN 483

Query: 230 KE---PISTIIYRADQALYVAKKSGRNRVV 256
                    ++ RAD ALY AK SGRN VV
Sbjct: 484 DAANRNFEDLVKRADLALYAAKASGRNCVV 513


>gi|150018526|ref|YP_001310780.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052]
 gi|149904991|gb|ABR35824.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052]
          Length = 365

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 68/196 (34%), Positives = 103/196 (52%), Gaps = 11/196 (5%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKL 129
           L++ YIS      + E    Y ++   +  D L+GL N   F               E+L
Sbjct: 169 LIVSYISIKYADYIFETVRIYQKLRNEATKDYLTGLNNVREFDNSFNNISQRAVRKEEEL 228

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++F DID+FK+IND +GH  GD ++  L+  L+        V R+GGEEF+   L  S+
Sbjct: 229 SMLFIDIDFFKKINDTYGHNAGDTILKSLALILLDTCRAYDVVSRMGGEEFSIILLDCSD 288

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAK 248
            +A  +A  LR+ +E++   IS    I ITIS GIA   +    +  ++  AD ALY AK
Sbjct: 289 SKAVKIAERLREKVEDNDFYISDNKFIKITISIGIASYPNMTTQVDNLLEMADTALYQAK 348

Query: 249 KSGRNRVVCFSDIENN 264
            +GRN+VV F++ E+ 
Sbjct: 349 NTGRNKVVLFNNEEHK 364


>gi|313681222|ref|YP_004058960.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313154082|gb|ADR32760.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 509

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 14/204 (6%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
            + L+ IS T   +L  I   I ++L  +   +  L+  D L+GL N    +  L     
Sbjct: 303 WIILLTISSTTIFILLIIVYRINRKLNQTSAELFDLATHDPLTGLFNRRGMMERLKFLLA 362

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
             G   +  ++++ D+D FK +ND++GH +GD+++  +S ++ +       + R+GG+EF
Sbjct: 363 ELGRNKKNGALIYLDLDNFKPLNDSYGHAIGDELLIQVSKRIGMTVRAIDTIARMGGDEF 422

Query: 181 AAAALGSSE----QEAAILANDLRKII-ENSQINISSGPSI--HITISAGIAERCHKEPI 233
                        ++A  +A  LR ++ E   I+I+    I   I+ S G+         
Sbjct: 423 LVILSHMEPTKVYEDAKQIAEKLRTVLNEPFSISINEELEIKHSISASIGMVIFDEHHKA 482

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
            TII  AD A+Y AK+ GRNRVV 
Sbjct: 483 DTIIIHADAAMYEAKEQGRNRVVV 506


>gi|297539182|ref|YP_003674951.1| diguanylate cyclase [Methylotenera sp. 301]
 gi|297258529|gb|ADI30374.1| diguanylate cyclase [Methylotenera sp. 301]
          Length = 413

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 11/190 (5%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132
           +L      ++LK+LF S   +S+L+  D L+GL N                     ++I+
Sbjct: 218 ILRNEYVENLLKQLFESTTVLSELAYYDALTGLPNRRLLDDRAAQAFKAAKRSKHMVAIM 277

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQE 191
           F D+DYFK +ND++GH VGD+++  ++ +L  +  T   V R+GG+EF         EQ+
Sbjct: 278 FLDLDYFKAVNDDYGHEVGDQLLVSVAGRLKELLRTDDTVARIGGDEFVILLPKVDDEQQ 337

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
           A + A  + K +  ++     G  + I  S G+A         + ++  AD+A+Y AK+ 
Sbjct: 338 ATVAAEKIIKAL--TKPFEVEGKMLEIGGSLGVAIYSKSGATPANLLKCADEAMYSAKRL 395

Query: 251 GRNRVVCFSD 260
           GRN  V ++D
Sbjct: 396 GRNMFVVYAD 405


>gi|289674479|ref|ZP_06495369.1| GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 449

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 60/184 (32%), Positives = 89/184 (48%), Gaps = 11/184 (5%)

Query: 82  LGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSI 131
           L     S+ +E            Q + ID L+GL N +A+   L     +       L +
Sbjct: 264 LAARVASMEQEALGFRTHLEEQRQKALIDPLTGLPNRAAWGERLEQEMARWQEEKNSLLV 323

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK+IND +GH  GDKV+  +++ L        F+ R GGEEF      +S   
Sbjct: 324 CILDLDHFKRINDGYGHLAGDKVLKIVANVLSKRLRADDFMARFGGEEFVMLLPATSPAA 383

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              L ++LR  +E+   +   G  + IT+S G+      E   T I RADQALY AK++G
Sbjct: 384 GLTLLDELRAAVESCPFHFK-GERVTITVSIGLTAFRPSEKSDTAIKRADQALYKAKENG 442

Query: 252 RNRV 255
           RNR+
Sbjct: 443 RNRI 446


>gi|218458168|ref|ZP_03498259.1| hypothetical protein RetlK5_01397 [Rhizobium etli Kim 5]
          Length = 232

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 87/196 (44%), Gaps = 13/196 (6%)

Query: 77  TISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NE 127
           T   ++  I+ +   E  L +S  ++  L+  D L+G++N  AF              N 
Sbjct: 26  TAMAVVSDITATKQAEIALRLSAEQLRNLAETDGLTGIVNRRAFDEIFARETAGSARKNT 85

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALG 186
             S++  DID FK  ND +GHP GD+ +  +S  L   V      V R GGEEF      
Sbjct: 86  PFSLLMVDIDRFKAYNDTYGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFVVFLPD 145

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQA 243
           +S + A I+A    + +    I  S      +T S GI+           + ++  AD A
Sbjct: 146 TSAKGAMIVAEQFARRLAKENILHSGSEFGCVTASIGISCATGATLRASPNRLLAEADTA 205

Query: 244 LYVAKKSGRNRVVCFS 259
           LY AK  GRNR++  S
Sbjct: 206 LYEAKTQGRNRILAHS 221


>gi|126667151|ref|ZP_01738125.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter sp. ELB17]
 gi|126628307|gb|EAZ98930.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter sp. ELB17]
          Length = 319

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 109/227 (48%), Gaps = 17/227 (7%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISI------TISLLLGYIS--GSILKELFISYNRI 100
            L +    P  G E  + +NL++  +         + L++  ++   S  + L  + +++
Sbjct: 94  LLRFRNTRPITGTEEFMYQNLTISPLCGPSGKVEKVCLMIYDVTDIASSKRALERANDQL 153

Query: 101 SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           ++LS ID L+GL N  ++ + L         Y    ++V FDID+FK IND+FGH VGDK
Sbjct: 154 AKLSMIDKLTGLFNRGSWENLLDAEFSRHRRYGGNSTLVMFDIDHFKAINDSFGHLVGDK 213

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           VI   +             GR GGEEFA     +    A  +   +   I    + + + 
Sbjct: 214 VIRHTAATTRRHLRHSDSAGRYGGEEFAIILPETDTAGALTICERILSAISRETVTV-NS 272

Query: 214 PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +I  T+S GIA      +     + +ADQA+Y AK+ GRN++V FS
Sbjct: 273 HNISYTVSMGIAPLSDSPKNYLAWLEQADQAMYSAKQGGRNQIVTFS 319


>gi|119490634|ref|ZP_01623039.1| GGDEF/response regulator receiver domain protein [Lyngbya sp. PCC
           8106]
 gi|119453799|gb|EAW34956.1| GGDEF/response regulator receiver domain protein [Lyngbya sp. PCC
           8106]
          Length = 329

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 89/185 (48%), Gaps = 20/185 (10%)

Query: 92  ELFISYNRI-------SQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDID 137
           EL  + + +        + +  D L+G+ N    +           +YN   SI+  DID
Sbjct: 126 ELKYTKDELNKKSAAFEKQAITDPLTGIFNRRHLMSISEIEYQKAVNYNRLFSIIMLDID 185

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK++ND +GH VGD+V+  ++ ++  +       GR GGEEFA    G+  + A  +A 
Sbjct: 186 HFKKVNDTYGHIVGDQVLKRMTQEVQNLLREGDVCGRFGGEEFAIILPGADLKIALKIAE 245

Query: 198 DLRKIIENSQINISSGPS-----IHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
            LR+ I +  I I    S     I ITIS G+       + +  +  RAD ALY AK  G
Sbjct: 246 RLRQAIADFYIPIYDSNSSSNLKIKITISLGVTTYHIDDDKLDKMWRRADDALYQAKAKG 305

Query: 252 RNRVV 256
           RN+V 
Sbjct: 306 RNQVC 310


>gi|224826822|ref|ZP_03699922.1| diguanylate cyclase with PAS/PAC sensor [Lutiella nitroferrum 2002]
 gi|224601042|gb|EEG07225.1| diguanylate cyclase with PAS/PAC sensor [Lutiella nitroferrum 2002]
          Length = 770

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 12/196 (6%)

Query: 63  YILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           ++ +E +S+  +      ++ Y+     + E   +  RI  L+  D L+GL N +  +  
Sbjct: 558 HLYLEMISISRVVDGQGRVVNYVGMFQDVTERRQAEERIRHLAHHDYLTGLPNRAHLLER 617

Query: 122 L-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
                     Y  +L+I+F D+D FK IND +GH VGD V+  ++D+L+ +      V R
Sbjct: 618 ASQALALARRYQRRLAILFLDLDRFKPINDRYGHDVGDVVLRTVADRLLALVRESDTVCR 677

Query: 175 LGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           LGG+EF        +      LA+ LR  IE  Q        + ++ S GIA    H + 
Sbjct: 678 LGGDEFVILLAEYHDFASVEQLAHTLRTAIE--QPCEVGALRLAVSASIGIATYPEHGDS 735

Query: 233 ISTIIYRADQALYVAK 248
           +  +I RAD A+Y AK
Sbjct: 736 VGALIQRADAAMYRAK 751


>gi|90412943|ref|ZP_01220942.1| hypothetical sensory box/GGDEF family protein [Photobacterium
           profundum 3TCK]
 gi|90326122|gb|EAS42556.1| hypothetical sensory box/GGDEF family protein [Photobacterium
           profundum 3TCK]
          Length = 326

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 104/234 (44%), Gaps = 20/234 (8%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISIT------ISLLLGYIS--GSILKELFISYNRISQL 103
           +   +P  G   ++ +NL L  +         I L +  +S        L  S  +++ L
Sbjct: 94  FSNFSPISGGSEVMYQNLILTPLKSLHGDFSHICLSVTDVSDIAKNKTHLRESNKQLTHL 153

Query: 104 SRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S  D L+ L N   +                  ++V FDID+FK++ND FGH  GD VI 
Sbjct: 154 SMTDRLTQLYNRGHWETCLAEEFERCRQTQTPSTLVMFDIDHFKKVNDTFGHVAGDGVIR 213

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +S+ L          GR GGEEF      +S          LR+ IE S++N+    SI
Sbjct: 214 IVSNVLRRTKRQSDIAGRYGGEEFGIILPYTSSDMGQYFTERLRQRIEQSRVNVDV-RSI 272

Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS---DIENNTC 266
           ++TIS G+ E           +  AD+ALY++K+SGRN+   F    + E ++ 
Sbjct: 273 NVTISLGVCEWYPELRNYEQWLEHADKALYISKQSGRNQSTVFEALVEQEKDSA 326


>gi|86147884|ref|ZP_01066189.1| putative sensory box/GGDEF family protein [Vibrio sp. MED222]
 gi|218710865|ref|YP_002418486.1| putative sensory box/GGDEF family protein [Vibrio splendidus LGP32]
 gi|85834311|gb|EAQ52464.1| putative sensory box/GGDEF family protein [Vibrio sp. MED222]
 gi|218323884|emb|CAV20245.1| putative sensory box/GGDEF family protein [Vibrio splendidus LGP32]
          Length = 316

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 97/177 (54%), Gaps = 7/177 (3%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQI 142
             + +       + +L+ ID L+G+LN  AF+  L         + L+ +  DID+FK+I
Sbjct: 120 RDITKAQQREAELIELAEIDELTGILNRRAFLLGLEKEFSQPPKQSLTCLMIDIDHFKEI 179

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD+VI  ++           ++GRLGGEEF      +S  EA  +A  +RK 
Sbjct: 180 NDQVGHLSGDEVIVQVASLCQQSIDCDDYLGRLGGEEFGVILTHTSAIEAYYVAETIRKT 239

Query: 203 IENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE++   +  G  I+ T+S G+AE   H + I  ++ +AD+A+Y +K++GRN+V  +
Sbjct: 240 IESTPCTV-DGHIIYPTVSIGVAEYTPHLKTIKELLAQADRAMYSSKQTGRNQVTLY 295


>gi|254000512|ref|YP_003052575.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. SIP3-4]
 gi|253987191|gb|ACT52048.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. SIP3-4]
          Length = 949

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 85/181 (46%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
             + EL     R+  L+  D L+ L N + F   +           +K  ++  D+D+FK
Sbjct: 504 RDITELVAYRERVYYLAYYDSLTNLPNRTLFNDRISQVLMEAQWSKQKFGVMVLDLDHFK 563

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            IND+ GH VGD+++   +D+L +   T   V R+GG+EFA       +  + A +AN +
Sbjct: 564 SINDSLGHLVGDELLCATADRLQMAIRTYDTVARMGGDEFAILLPDIRKPDDLATIANKI 623

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            ++I   Q     G  + I+ S GIA      E    +   AD A+Y AK  GR+    +
Sbjct: 624 VQVIA--QPFHIQGKELFISTSVGIATYPLDGEDQEALYKCADAAMYHAKSMGRSNYQFY 681

Query: 259 S 259
           S
Sbjct: 682 S 682


>gi|219847926|ref|YP_002462359.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus aggregans DSM 9485]
 gi|219542185|gb|ACL23923.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus aggregans DSM 9485]
          Length = 312

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 66/174 (37%), Positives = 95/174 (54%), Gaps = 9/174 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           +EL  +  R ++L+RID L+G+ N S F             Y++ L+I  FD+D+FK IN
Sbjct: 138 RELQRALAREAELARIDWLTGVYNRSHFYELATYEFAIATRYDQPLAICMFDVDHFKHIN 197

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH +GD+V+  ++        T   +GR GGEEF      ++ +    LA  LR  +
Sbjct: 198 DQYGHLIGDQVLRTIAQTAARQIRTADCIGRFGGEEFILLLPNTTMEAGLNLAERLRVAV 257

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
              +I+   G +I  TIS G+A R   +  I  II RADQALY AK+ GRN VV
Sbjct: 258 AALEIHTEKG-TITATISLGVAGRQPADTMIERIIDRADQALYAAKRQGRNCVV 310


>gi|312962462|ref|ZP_07776953.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           fluorescens WH6]
 gi|311283389|gb|EFQ61979.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           fluorescens WH6]
          Length = 798

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 63/184 (34%), Positives = 95/184 (51%), Gaps = 13/184 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSI 131
           +L  GY+S   + +L      +  LS  D L+G+ N   F   L          +  LS+
Sbjct: 614 TLWHGYVS--DISDLKRVEEELRALSITDSLTGIHNRRYFQDRLKAEMVRVNRTSGALSV 671

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK+IND +GH VGD V+  L  ++           RLGGEEF     G+  ++
Sbjct: 672 IMLDIDHFKRINDKYGHAVGDGVLQELCKRISQRLRRTDVFCRLGGEEFMVLCPGTDGEQ 731

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A  LA DL +++ N+ +     P   +T S G+A     E I  ++ RAD A+YVAK++G
Sbjct: 732 AYSLAEDLWRVLRNAPME----PVGIVTASFGVASWRVDEGIDGLLLRADSAVYVAKQAG 787

Query: 252 RNRV 255
           R+RV
Sbjct: 788 RDRV 791


>gi|197104776|ref|YP_002130153.1| stalked-cell differentiation controlling protein [Phenylobacterium
           zucineum HLK1]
 gi|196478196|gb|ACG77724.1| stalked-cell differentiation controlling protein [Phenylobacterium
           zucineum HLK1]
          Length = 454

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 57/191 (29%), Positives = 92/191 (48%), Gaps = 14/191 (7%)

Query: 81  LLGYISGSILKELFISYNR--ISQ---LSRIDCLSGLLNHSA-------FISSLGSYNEK 128
           L       I ++ +  Y R  +     L+  D L+GL N           +    +  + 
Sbjct: 261 LAARAKTQIRRKRYTEYLRNNLDHSLELAVTDQLTGLHNRRYMQGQLEALMRRAAAGGDP 320

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           ++++  DID+FK+IND+FGH VGD+V+   + +L           R GGEEF      +S
Sbjct: 321 VALLVIDIDHFKRINDSFGHDVGDEVLREFAVRLASNVRAIDLPVRHGGEEFVVVMPDTS 380

Query: 189 EQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPIST-IIYRADQALYV 246
            ++A  +A  +R  +  S   +  G   + +TIS G+A     E  S  ++ RAD+A+Y 
Sbjct: 381 LEDARRIAERIRLHVAGSPFRVMGGEELLSVTISIGVAAGAGGEDSSQALLKRADEAVYE 440

Query: 247 AKKSGRNRVVC 257
           AK  GRNRV+ 
Sbjct: 441 AKSRGRNRVIA 451


>gi|161521548|ref|YP_001584975.1| diguanylate cyclase [Burkholderia multivorans ATCC 17616]
 gi|189352282|ref|YP_001947909.1| putative diguanylate cyclase [Burkholderia multivorans ATCC 17616]
 gi|160345598|gb|ABX18683.1| diguanylate cyclase [Burkholderia multivorans ATCC 17616]
 gi|189336304|dbj|BAG45373.1| putative diguanylate cyclase [Burkholderia multivorans ATCC 17616]
          Length = 510

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 63/197 (31%), Positives = 95/197 (48%), Gaps = 15/197 (7%)

Query: 74  ISITISLLLGYIS------GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
           I + +SL  G+++         L+   ++  ++ +L+R D L+GL N  AF ++L     
Sbjct: 304 IVVLMSLFTGFVAWGSLLLSRELRRRQVAEAKLYRLARTDSLTGLDNRGAFDAALAQEAR 363

Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEE 179
                   LS++F D+D+FK  ND +GH  GD V+  ++             + R GGEE
Sbjct: 364 RAARSGRPLSVLFVDVDHFKAFNDYYGHLAGDDVLRRVAQCASGCLRRATDHIARYGGEE 423

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIY 238
           F      +  Q AA +A  +R+ I    I     P  H+T S G A   H     +T++ 
Sbjct: 424 FVVTLPDTDAQGAATVAEGIRRAIAALGIEHVKSPYGHVTASIGTATDPHGRMDAATLLQ 483

Query: 239 RADQALYVAKKSGRNRV 255
           RAD ALY AK  GRNRV
Sbjct: 484 RADDALYRAKYGGRNRV 500


>gi|237507666|ref|ZP_04520381.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346]
 gi|254191152|ref|ZP_04897657.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237]
 gi|254263742|ref|ZP_04954607.1| diguanylate cyclase [Burkholderia pseudomallei 1710a]
 gi|254301806|ref|ZP_04969249.1| diguanylate cyclase [Burkholderia pseudomallei 406e]
 gi|157811571|gb|EDO88741.1| diguanylate cyclase [Burkholderia pseudomallei 406e]
 gi|157938825|gb|EDO94495.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237]
 gi|234999871|gb|EEP49295.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346]
 gi|254214744|gb|EET04129.1| diguanylate cyclase [Burkholderia pseudomallei 1710a]
          Length = 506

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 13/196 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------- 125
           + ++   ++  Y++ S+ ++   +   +++L+  D L+GL N  A   +L          
Sbjct: 307 VFALIFVVMSAYLAHSLWRK-STAEAALARLAGTDSLTGLYNRRALDETLEREWRRAVGG 365

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAA 184
           +  L+I+F DID+FK+ ND +GH VGD+V+A +S  +          V R GGEEF    
Sbjct: 366 DRPLAILFVDIDHFKRYNDTYGHQVGDEVLATVSRCIAQQAARLGDVVARYGGEEFVVVL 425

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRA 240
             +    A ++A  +R  +    I         +T+S G+A           I+ I+  A
Sbjct: 426 PDTPRGGALVVAERVRLGVRMLGIEHEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAA 485

Query: 241 DQALYVAKKSGRNRVV 256
           DQALY AK  GRNRVV
Sbjct: 486 DQALYRAKADGRNRVV 501


>gi|121597126|ref|YP_990000.1| GGDEF domain-containing protein [Burkholderia mallei SAVP1]
 gi|126446618|ref|YP_001078531.1| GGDEF domain-containing protein [Burkholderia mallei NCTC 10247]
 gi|126456805|ref|YP_001075789.1| diguanylate cyclase [Burkholderia pseudomallei 1106a]
 gi|242312649|ref|ZP_04811666.1| diguanylate cyclase [Burkholderia pseudomallei 1106b]
 gi|121224924|gb|ABM48455.1| GGDEF domain protein [Burkholderia mallei SAVP1]
 gi|126230573|gb|ABN93986.1| diguanylate cyclase [Burkholderia pseudomallei 1106a]
 gi|126239472|gb|ABO02584.1| diguanylate cyclase (GGDEF) domain protein [Burkholderia mallei
           NCTC 10247]
 gi|242135888|gb|EES22291.1| diguanylate cyclase [Burkholderia pseudomallei 1106b]
          Length = 499

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 13/196 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------- 125
           + ++   ++  Y++ S+ ++   +   +++L+  D L+GL N  A   +L          
Sbjct: 300 VFALIFVVMSAYLAHSLWRK-STAEAALARLAGTDSLTGLYNRRALDETLEREWRRAVGG 358

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAA 184
           +  L+I+F DID+FK+ ND +GH VGD+V+A +S  +          V R GGEEF    
Sbjct: 359 DRPLAILFVDIDHFKRYNDTYGHQVGDEVLATVSRCIAQQAARLGDVVARYGGEEFVVVL 418

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRA 240
             +    A ++A  +R  +    I         +T+S G+A           I+ I+  A
Sbjct: 419 PDTPRGGALVVAERVRLGVRMLGIEHEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAA 478

Query: 241 DQALYVAKKSGRNRVV 256
           DQALY AK  GRNRVV
Sbjct: 479 DQALYRAKADGRNRVV 494


>gi|85711690|ref|ZP_01042747.1| hypothetical protein OS145_00775 [Idiomarina baltica OS145]
 gi|85694550|gb|EAQ32491.1| hypothetical protein OS145_00775 [Idiomarina baltica OS145]
          Length = 363

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 122/288 (42%), Gaps = 45/288 (15%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           ++L   K L       F++   +  + F++      N +L+     PF            
Sbjct: 66  LYLVKRKRLLELVSWLFVLTLGLLITAFLSLAAGSNNGYLWTAVFPPFAFFLLGKTRGFW 125

Query: 71  LVIISITISLLLGYISGSILK----------------------------------ELFIS 96
           L ++  TI L+  YIS  + +                                  EL   
Sbjct: 126 LTVVFFTIFLIQLYISIFVKQVPYLSLGGFLNTLEVFVISLLLYRFYEKTRTEANELLQE 185

Query: 97  YN-RISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            + R+ ++++ D L+ L N      +L           +S++  D+D FK+IND  GH  
Sbjct: 186 QSIRLEKMAKTDKLTQLYNRQYLDVTLFSLYKERRTLPISVLLLDVDLFKRINDEHGHLF 245

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  ++ +L  V      VGR GGEEF   A  +S+ +A  LA  +R+      +N+
Sbjct: 246 GDEVLVKMAQRLTEVVRDDDVVGRWGGEEFLIIAPNTSKSDALGLAERVRR-----SLNM 300

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S   S+  ++S G++     +    +I +AD+ALY AK +GRN+V  F
Sbjct: 301 SITESVTTSVSIGVSSADRVKSPEELISQADRALYQAKSNGRNQVCSF 348


>gi|331005508|ref|ZP_08328886.1| response regulator receiver domain protein (CheY-like) [gamma
           proteobacterium IMCC1989]
 gi|330420700|gb|EGG94988.1| response regulator receiver domain protein (CheY-like) [gamma
           proteobacterium IMCC1989]
          Length = 594

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
             + ++E  +   +I   +  D L+GL N  A+   +         Y   LS+   DID+
Sbjct: 414 QDADIRE-QLEQEKIR--AVTDKLTGLPNREAYSERVHDEMLRWQRYQHPLSLAVLDIDF 470

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++ND +GH +GDKV+  +S  +        F+ R GGEEF      +S ++A  + N 
Sbjct: 471 FKKVNDQYGHQMGDKVLKAVSSSVANRLREVDFIARFGGEEFVLLLPETSAEDALHMLNR 530

Query: 199 LRKIIENSQINI--SSGPS--IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            R+ +  +Q+    S G      +T S GIA+    +    +  RAD+ALY AK++GRN+
Sbjct: 531 TRERLAKTQMKSKNSDGEETKFTVTFSIGIAQFTDGDTADDVFERADKALYEAKENGRNQ 590

Query: 255 VVC 257
            V 
Sbjct: 591 CVI 593


>gi|222053406|ref|YP_002535768.1| diguanylate cyclase [Geobacter sp. FRC-32]
 gi|221562695|gb|ACM18667.1| diguanylate cyclase [Geobacter sp. FRC-32]
          Length = 400

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 69/265 (26%), Positives = 121/265 (45%), Gaps = 33/265 (12%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLG-- 83
            M Y++ F   F+A  +    IFL Y  L  +   +   ++ N +   I+  I+ +    
Sbjct: 124 LMFYYTFFRLPFLAATVLSWTIFLLYEVLVIWTKSIPLPILTNNTFFFIAFNITGMSASY 183

Query: 84  ---------YISGSILKE-----------LFISYNRISQLSRIDCLSGLLNHSAF----- 118
                    ++    ++E           +  S +   +++++D L+ L N   F     
Sbjct: 184 SIERYMRQDFLQRRKIREQTENLKKALLDVEKSRHEAEEMAKLDPLTSLYNRRHFFSIAE 243

Query: 119 --ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
             ++    Y   LSI+  D+D+FK++ND +GH +GD+V+  L+  +  +        R G
Sbjct: 244 RELARYRRYRHSLSIIMIDLDHFKRVNDTYGHFIGDQVLQALAAAIDKLMRKADTPCRYG 303

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--IS 234
           GEEFA     +    A  L   ++  IE+++I+   GP I +T+S GIA     E   I 
Sbjct: 304 GEEFAILMPETDLAAAQNLGRRIKDAIESTEIDTRKGP-IKVTLSMGIASLDGAEDACIE 362

Query: 235 TIIYRADQALYVAKKSGRNRVVCFS 259
            ++ RAD ALY AK SGR+ +  + 
Sbjct: 363 QLVERADHALYQAKYSGRSLIRIWD 387


>gi|320529775|ref|ZP_08030853.1| diguanylate cyclase domain protein [Selenomonas artemidis F0399]
 gi|320138014|gb|EFW29918.1| diguanylate cyclase domain protein [Selenomonas artemidis F0399]
          Length = 605

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 69/257 (26%), Positives = 116/257 (45%), Gaps = 19/257 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL 69
            +W CH+K      P   + + ++     +  + F   +F +   L PF G+  +    +
Sbjct: 322 WLWSCHKKGNMYCRPI-LIAFAALSILAVLDGLSFQFRVFAWNTYLLPF-GIYTVAFFIV 379

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSL 122
            L++        L  +S S+  ++     R+     +D L+   N + F       +   
Sbjct: 380 RLILDRAANERYLSDLSASLESQVDAVTKRME----VDPLTSCYNRNKFPSAVHDFMRIA 435

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
               E  S++ FDID+FK+IND +GH VGD V+   +  +         + R GGEEF  
Sbjct: 436 RDTGEPFSLIMFDIDHFKRINDTYGHDVGDVVLVNFARTIKAFLDRRHILIRWGGEEFIL 495

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRA 240
             L     +A   AN +R+ +   +I+    PS  +T SAG+       ++    I+ RA
Sbjct: 496 LCLHYDGAQAQAFANVIREAVSEERIH----PSDQVTCSAGVGVWYGSDEDTADCIVKRA 551

Query: 241 DQALYVAKKSGRNRVVC 257
           D ALY +K++GRNRV C
Sbjct: 552 DTALYESKQNGRNRVTC 568


>gi|152992783|ref|YP_001358504.1| hypothetical protein SUN_1192 [Sulfurovum sp. NBC37-1]
 gi|151424644|dbj|BAF72147.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 1223

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 11/184 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL     +++  +  D L+ L N + F   L         +NEK  + F D+D FK IND
Sbjct: 787 ELLEQTKQLNFQAYHDPLTQLPNRTLFNDRLEQTITYAHRHNEKFGVFFIDLDNFKLIND 846

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
             GH +GD+V+  +S +          + RLGG+EF       ++ + AA +A  +   +
Sbjct: 847 TLGHHLGDEVLKIVSHRFSKCIREEDTLSRLGGDEFTVLVHELNTPESAAKIAGKMMGSL 906

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +     +  G ++H+T S GI+         + ++  AD A+Y AK+ GRN    +S   
Sbjct: 907 KEE--VVVEGQTLHVTASIGISLYPRDAVYKNDLLKYADSAMYKAKEVGRNNYQFYSSEM 964

Query: 263 NNTC 266
            N  
Sbjct: 965 TNLA 968


>gi|157825448|ref|YP_001493168.1| response regulator PleD [Rickettsia akari str. Hartford]
 gi|157799406|gb|ABV74660.1| response regulator PleD [Rickettsia akari str. Hartford]
          Length = 450

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 64/191 (33%), Positives = 89/191 (46%), Gaps = 13/191 (6%)

Query: 79  SLLLGYISGSILKELFI--SYNRISQ---LSRIDCLSGLLNHSAFISSLGSYNEK----- 128
           S LL  I   + ++ +    +N + Q   L+  D L+GL N   F   L    EK     
Sbjct: 258 SELLARIRTQLRRKQYQDNLHNDLEQSVNLAAKDGLTGLFNRRYFDIHLKQMIEKANNES 317

Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             L ++  DID FK +ND +GH  GDKV+  +S  L         + R GGEEF      
Sbjct: 318 IKLYLLMCDIDNFKHVNDTYGHQAGDKVLTIVSRILKNTLRVTDLIARFGGEEFTILLTD 377

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALY 245
               +A   A  +R  IE    +I      +  TIS G+ E    E I + I RAD+A+Y
Sbjct: 378 IDISKAIETAERIRVKIEYMDFHIEDQIEPLQKTISIGVTEYKKAESIESFIERADKAMY 437

Query: 246 VAKKSGRNRVV 256
            AK +GRN+VV
Sbjct: 438 EAKTTGRNKVV 448


>gi|254414369|ref|ZP_05028136.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196179044|gb|EDX74041.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 314

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 60/179 (33%), Positives = 89/179 (49%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYF 139
             ++KE     N + +L+  D L+GL N   F+       +    Y   +SI+  DID+F
Sbjct: 136 NRLVKEHEKLANLLRKLAITDPLTGLWNRRHFLTVAYQEFNRASRYKRFMSILMIDIDHF 195

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQIND +GH +GD+V+  ++  +V       + GR GGEEF      +    A  +A  L
Sbjct: 196 KQINDEYGHTMGDEVLKGVAKSIVGSLREADYCGRFGGEEFVTLLPETDSSGAVRVAERL 255

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           RK +E   I I     + +T++ G+A        I  II RA++ALY AK  G NRV  
Sbjct: 256 RKRMEQITIGIGD-KQVQMTVTVGVASYQLDDANIEVIIQRANKALYHAKSQGYNRVAL 313


>gi|34499542|ref|NP_903757.1| hypothetical protein CV_4087 [Chromobacterium violaceum ATCC 12472]
 gi|34105392|gb|AAQ61747.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 249

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 11/193 (5%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125
           ++++S T++L + + +   L+E       + + +  D ++GL N      +L        
Sbjct: 53  VLLLSFTMALSMTWFAVRRLREARQLLKALRRQAERDDITGLANRRRANQALQRETERSY 112

Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                 S++  D+D+FK IND+ GH  GD V+      L         V R GGEEF   
Sbjct: 113 RSGRPYSVLLLDLDHFKHINDSHGHLAGDMVLQRFGQALRQRARQLDTVARWGGEEFIII 172

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              + +  A  LA ++ +++  +      G    +T S G+A     +   ++++RAD  
Sbjct: 173 CPETEQAGALTLAENIGQLLRETDF----GAVARVTASIGVATLSDDDTPDSLVHRADMH 228

Query: 244 LYVAKKSGRNRVV 256
           LY AK++GR+RVV
Sbjct: 229 LYAAKQAGRDRVV 241


>gi|330873473|gb|EGH07622.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 1158

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 15/192 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + E   S +RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 803 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQQAERQQAWVVLMFLDLDRFK 862

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAA----IL 195
            IND+ GH  GD+++  ++ +L+        V R+GG+EF        + + A      +
Sbjct: 863 PINDSLGHAAGDRMLQEMATRLLACVSADDTVARMGGDEFTLLLQPDITREAALTRAIHV 922

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
           A  +   +      +  G    +T S GIA        +S ++  AD A+Y AK+ G+N 
Sbjct: 923 AERILTSL--VTPFVLEGREFFVTASIGIALSPQDGSELSKLMKNADTAMYHAKECGKNN 980

Query: 255 VVCFSDIENNTC 266
              +    N T 
Sbjct: 981 FQFYQTDMNATA 992


>gi|329913210|ref|ZP_08275906.1| hypothetical protein IMCC9480_1122 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545406|gb|EGF30622.1| hypothetical protein IMCC9480_1122 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 942

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 10/193 (5%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIV 132
           +++   +    + +       +S  +  D L+G+LN  AF + L +         + +++
Sbjct: 470 AIIGAVVVLHDVSDERRHAAELSHQANHDALTGVLNRRAFEARLNALISDTASQRQYAVL 529

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           + D+D FK +ND  GH  GD++I  +S  L         + RLGG+EF    L   + +A
Sbjct: 530 YLDLDQFKVVNDTCGHAAGDELICQISMILQQSIREGDLLARLGGDEFGIVLLDCGDSDA 589

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSG 251
             +A  LR+ +   +  I  G    + +S G +A       +  ++  AD A Y+AK+ G
Sbjct: 590 MRIAEQLRESVAAIRF-IWGGQRFTVGVSVGMVALARGGSTLKEVMKSADAACYMAKEKG 648

Query: 252 RNRVVCF--SDIE 262
           RNRV  +   DIE
Sbjct: 649 RNRVHVYRTDDIE 661


>gi|218680699|ref|ZP_03528596.1| urease-associated protein [Rhizobium etli CIAT 894]
          Length = 287

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 82/249 (32%), Positives = 118/249 (47%), Gaps = 5/249 (2%)

Query: 12  WLCHEKNLESFS----PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE 67
           W+  + +  +F      + F +  S    +    ++ +    L ++GL P      +   
Sbjct: 4   WMSLQADFGNFQHRRNVYLFALKMSFLAVVLSGVIMSLTIPPLGFLGLLPVTLSHALGFG 63

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE 127
            +   ++  T+S +L   +G  L EL +S     +LSR D LSGLLN  AF  +L +   
Sbjct: 64  AIFSWLVGGTVSGMLSLAAGFALHELTLSRAEFEKLSRTDTLSGLLNRRAFSEALENTES 123

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
             S+V FD+D FK IND FGH  GD VI  +S  L   F     V RLGGEEF     G 
Sbjct: 124 NASLVIFDVDRFKAINDRFGHACGDAVITAVSAVLTSTFDELSVVARLGGEEFGVIVSGE 183

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
             +        +R  I    I ++ G +I ITIS G+A+         +   AD+ALY+A
Sbjct: 184 PLEARLERIQAVRARIAGGPI-VTEGHNIGITISGGVADLVAGRSKQQVYASADRALYLA 242

Query: 248 KKSGRNRVV 256
           K  GRNRVV
Sbjct: 243 KALGRNRVV 251


>gi|121594373|ref|YP_986269.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Acidovorax sp. JS42]
 gi|120606453|gb|ABM42193.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Acidovorax sp. JS42]
          Length = 1299

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 11/181 (6%)

Query: 94   FISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNF 146
                 ++ +++  D L+GL N       L +         ++L + + D+D FK +ND  
Sbjct: 839  RQQERQLERMAHYDALTGLPNRVMLERRLRAGMEHSRARGQQLGVAYLDLDGFKPVNDRL 898

Query: 147  GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN- 205
            GH  GD+++  ++++L         V RLGG+EF     G     A      L  ++E+ 
Sbjct: 899  GHAAGDRLLVVVAERLKRALRLTDSVARLGGDEFVILLSG--LAHAEECERRLHTVMESV 956

Query: 206  SQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            +      G  + +T S G       E    T++  ADQA+Y AK++GRNR   F   E  
Sbjct: 957  AAPYTLDGERVLVTASIGYTLYPDDEADADTLLRHADQAMYAAKQAGRNRFHGFDAAEER 1016

Query: 265  T 265
             
Sbjct: 1017 A 1017


>gi|253999917|ref|YP_003051980.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Methylovorus sp.
           SIP3-4]
 gi|253986596|gb|ACT51453.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. SIP3-4]
          Length = 821

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 11/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E+      + + +  D L+GL N +     +         +N   S+ F DID FK+
Sbjct: 374 DITEIRQYQEALERQANYDTLTGLANRNLLKERMQQAISEARRHNWTFSVAFIDIDNFKR 433

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLR 200
           +ND+ GH  GD++I  L  +L         V RLGG+EF       S  E    +   +R
Sbjct: 434 VNDSMGHSAGDELIRLLGQRLQSCLRDGDTVARLGGDEFVLLLTSQSLDESIHTVVQRIR 493

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I N    I +G  + +T S G+A   H      T++  AD A+Y AK SG N    ++
Sbjct: 494 NTIIN--PFIITGRQLTVTCSIGLANFPHDGRNADTLLSNADSAMYQAKASGSNNFRFYA 551

Query: 260 DIEN 263
              N
Sbjct: 552 KEMN 555


>gi|254475311|ref|ZP_05088697.1| response regulator PleD [Ruegeria sp. R11]
 gi|214029554|gb|EEB70389.1| response regulator PleD [Ruegeria sp. R11]
          Length = 270

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 67/184 (36%), Positives = 99/184 (53%), Gaps = 12/184 (6%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVF 133
           L+G +S   ++EL  +Y  +   +  D L+ + N   F+ +L +  E        LS+  
Sbjct: 75  LVGILS---IRELTKAYELLQIEANTDPLTQVSNRRPFLKTLETNFENALEIGLPLSVAM 131

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D+FK IND++GH  GDKV+  LS  L+  F T   VGRLGGEEFA     +    A 
Sbjct: 132 LDVDHFKLINDSYGHDAGDKVLQELSRMLIREFRTVDLVGRLGGEEFALVFPETDLAGAF 191

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252
           I    LRK +E   I+ + G  I +T+S G+ E        ++++ RAD+ LY AK  GR
Sbjct: 192 IACERLRKSVEQQVIH-AHGHKIRLTVSIGLTEIAGGFVNGASLLKRADELLYSAKSGGR 250

Query: 253 NRVV 256
           N+VV
Sbjct: 251 NQVV 254


>gi|158333756|ref|YP_001514928.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158303997|gb|ABW25614.1| diguanylate cyclase (GGDEF domain), putative [Acaryochloris marina
           MBIC11017]
          Length = 370

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 55/181 (30%), Positives = 88/181 (48%), Gaps = 11/181 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139
            S+ ++L ++  ++ +L  ID L+ + N   F          L   N  LS++  D+D+F
Sbjct: 143 QSLSEQLELANQQLEELVTIDSLTQVNNRRCFDETFLSEWNRLCRENHPLSLIMCDVDHF 202

Query: 140 KQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           K  ND +GH  GD  +  ++  +  V       V R GGEEFA     +    A  +A  
Sbjct: 203 KAFNDTYGHQAGDVCLRQVAQAIAKVAKRPADCVARYGGEEFAIILPNTDLDGAIQVAEA 262

Query: 199 LRKIIENSQINISSGPSI-HITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRV 255
           +R  I+   I      +  ++T S G+A +   E +  S +I  AD+ALYVAK+ GR+RV
Sbjct: 263 IRSTIQELAIPHQHSSTGNNVTASLGVASQVPDENVAPSILIEAADRALYVAKQQGRDRV 322

Query: 256 V 256
            
Sbjct: 323 Q 323


>gi|91775155|ref|YP_544911.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus
           KT]
 gi|91709142|gb|ABE49070.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Methylobacillus flagellatus KT]
          Length = 1070

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 11/184 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           +  + + +   +  R+  L+  D L+GL N +     +         Y + + ++F D+D
Sbjct: 601 VVLTDISQRKQAEERLQFLATHDGLTGLPNRTLLQERMELAVLRAQRYQQCVGVLFIDLD 660

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILA 196
            FK IND  GH  GD ++  ++ +L         + R GG+EF        EQ+    +A
Sbjct: 661 RFKIINDTLGHQAGDVLLQEVAGRLGECLRQTDTIARQGGDEFVVLVEDFIEQQYLVNVA 720

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             +   +   Q  I     ++I+ S GI+        IS+++  AD A+Y AK  G+N  
Sbjct: 721 RKIMHALA--QPFILMQQELYISASIGISVYPDDGVDISSLLKNADMAMYRAKDDGKNTF 778

Query: 256 VCFS 259
             +S
Sbjct: 779 HFYS 782


>gi|56413101|ref|YP_150176.1| hypothetical protein SPA0883 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197362027|ref|YP_002141664.1| hypothetical protein SSPA0823 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|81361581|sp|Q5PLI4|YEDQ_SALPA RecName: Full=Cellulose synthesis regulatory protein
 gi|56127358|gb|AAV76864.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093504|emb|CAR58965.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 570

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 11/203 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+ +  T  LL+ + +   I+K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWVLFTAMLLISWGVIRHIVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 +  S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
            AD+ LY AK+SGRNR+ C SD 
Sbjct: 542 LADKRLYYAKQSGRNRI-CASDA 563


>gi|66043776|ref|YP_233617.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63254483|gb|AAY35579.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 719

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 95/197 (48%), Gaps = 14/197 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++          ++ L +
Sbjct: 261 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 317

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQ 190
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF     G    +
Sbjct: 318 LFMDLDGFKQINDTLGHEAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 377

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           +AA +A  L + +   +     G  I +  S GIA        +  ++  AD A+Y AK+
Sbjct: 378 QAAKIAEKLIERVSGRRQ--VDGVEITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKR 435

Query: 250 SGRNRVVCFSDIENNTC 266
           +GR +   +    N   
Sbjct: 436 AGRQQYRFYDQNMNGRA 452


>gi|292493169|ref|YP_003528608.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291581764|gb|ADE16221.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 948

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S +     +  R+  L+  D L+GL N + F+  L          N +++++F D+D FK
Sbjct: 497 SDITIRKQTEQRLYYLAHHDTLTGLPNRTLFLDRLKHAINHAHRRNYRVAVLFIDLDRFK 556

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND  GH +GD ++  ++ ++         + RLGG+EF       +      ++A  +
Sbjct: 557 FINDTLGHRIGDILLKQVAKRMQANIRAEDTIARLGGDEFTVIIESFTDTSVIPLIARKI 616

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
               E    NI +G  + ++ S GI+           ++  AD A+Y AK+ G+N    F
Sbjct: 617 INACEK-PFNI-NGKELFVSASIGISLYPTDGYDAGMLLQHADAAMYRAKEKGKNSYQFF 674

Query: 259 S 259
           +
Sbjct: 675 T 675


>gi|170729116|ref|YP_001763142.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169814463|gb|ACA89047.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
          Length = 485

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 14/197 (7%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE 127
           N+ L ++ I + L++  ++      L     ++  ++  D L+G  N   F        +
Sbjct: 294 NIVLGLMVIVVILVIANLT------LGRYQRKLEVMASTDKLTGATNRQMFEEYFSHSLQ 347

Query: 128 -------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   +S++  DIDYFK +NDNFGH +GD VI  +++ +     +   V R GGEEF
Sbjct: 348 NAEISATPVSVILLDIDYFKSVNDNFGHSIGDLVIKTVANIIRRQLRSEDIVCRWGGEEF 407

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                      AA +A  +R+ I   +I+++    I IT+S+G+A+    EP + +I R 
Sbjct: 408 LLLLPNIDLSHAADMAERIRESIAERKISVNE-HEIGITVSSGVAQYKLGEPRADLINRV 466

Query: 241 DQALYVAKKSGRNRVVC 257
           D ALY AK  GR++VV 
Sbjct: 467 DVALYQAKDRGRDQVVL 483


>gi|107027511|ref|YP_625022.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia cenocepacia
           AU 1054]
 gi|116693777|ref|YP_839310.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia cenocepacia
           HI2424]
 gi|105896885|gb|ABF80049.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia cenocepacia
           AU 1054]
 gi|116651777|gb|ABK12417.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia cenocepacia
           HI2424]
          Length = 313

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 11/204 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           L     +  + +TIS +       + +E   +  ++ + +  D L+G+ N   F + L  
Sbjct: 113 LTRGRDVEAVCVTISDVTH--VSVMQREREEAVAKLREHANRDGLTGIANRRFFEARLGD 170

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   LS++ FD+D+FK IND FGH  GD V+   + ++  +       GR GG
Sbjct: 171 EFARWQRYGGDLSVLLFDLDHFKTINDRFGHAAGDAVLRETARRVASIVRAQDTFGRFGG 230

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTI 236
           EEFA     ++  EA  +A+ +R+ I +  ++ + G S+ +T S G             +
Sbjct: 231 EEFALLLPCTNLDEAMRVADKVREAIGSMPVD-AEGVSVPVTASVGGTCAKAGALTCDVL 289

Query: 237 IYRADQALYVAKKSGRNRVVCFSD 260
           +  AD ALY AK+ GR+R V ++D
Sbjct: 290 VNEADAALYRAKRLGRDRSVAYAD 313


>gi|323703343|ref|ZP_08114993.1| diguanylate cyclase [Desulfotomaculum nigrificans DSM 574]
 gi|323531706|gb|EGB21595.1| diguanylate cyclase [Desulfotomaculum nigrificans DSM 574]
          Length = 353

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 22/201 (10%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
           N+ L + +I +SL L         E  I   ++  LS  D L+ L NH  F   L     
Sbjct: 159 NMILELFTIQVSLAL---------ENAILNKKLEALSITDALTRLYNHRYFAEVLQKQIT 209

Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 ++LS++  D+D FK+ ND++GHP GD V+  +    +          R GGEEF
Sbjct: 210 VSRQTKKELSLIMVDMDNFKEYNDSYGHPAGDLVLKLMGKIFMEHIRPGDVAARYGGEEF 269

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYR 239
           A    G+  ++   LA  +R  +E+++          +T S GIA    H +  + ++  
Sbjct: 270 ALILPGTPLKDGLALAEKIRLAVESTKFPHRL-----VTASFGIANFPTHCDNPADLLEL 324

Query: 240 ADQALYVAKKSGRNRVVCFSD 260
           ADQALY AK  GRN+V  + D
Sbjct: 325 ADQALYAAKTGGRNQVFIYGD 345


>gi|39996049|ref|NP_952000.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
 gi|39982814|gb|AAR34273.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
 gi|298505072|gb|ADI83795.1| sensor diguanylate cyclase/phosphodiesterase, HAMP and PAS
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 842

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 90/189 (47%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYF 139
              ++E   S   I +L+  D L+GL N + F                 ++++F D+D F
Sbjct: 382 AHDMRERKRSEEEIRRLAYFDPLTGLPNRALFQDRVSHALAVARREEGAVALLFLDLDRF 441

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND  GH +GD ++  ++D+L         + RLG +EF     G+  E+  +I+A  
Sbjct: 442 KDINDTLGHAMGDLLLTSVADRLKAHVRVSDTLARLGDDEFVVILTGARDERGVSIVAQS 501

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L  ++  +      G  + I+ S GIA      E  + ++ RAD AL+ AK++GRN    
Sbjct: 502 LLDLL--TPSFDLEGKEVFISTSIGIALFPSDGEDGNVLLSRADMALHAAKEAGRNVYRF 559

Query: 258 FSDIENNTC 266
           +SD  N + 
Sbjct: 560 YSDDMNRSA 568


>gi|269968597|ref|ZP_06182599.1| hypothetical protein VMC_40290 [Vibrio alginolyticus 40B]
 gi|269826808|gb|EEZ81140.1| hypothetical protein VMC_40290 [Vibrio alginolyticus 40B]
          Length = 320

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 63/180 (35%), Positives = 94/180 (52%), Gaps = 12/180 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L  +   +S++SR D L+GL N + +  SL          +   S+V FDID+FK++ND 
Sbjct: 145 LKETNQHLSEISRKDGLTGLFNRAYWEQSLKDEFAHLKVIDGPCSLVIFDIDHFKKVNDT 204

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GHP GD+VI   S  L     +    GR GGEEF      +++++A   A  LRK IE 
Sbjct: 205 YGHPTGDEVIRRTSALLRKTARSSDICGRFGGEEFTVLLPHTNQEQACYFAERLRKRIEQ 264

Query: 206 SQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             + +     I+ TIS G+ E   + E  +  +  AD ALY AK++GRN+       EN+
Sbjct: 265 EIVKVED-FLINYTISIGVCEYKPYFETHTQWLKSADAALYRAKENGRNQTCLH---END 320


>gi|46580215|ref|YP_011023.1| GGDEF domain-containing protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602400|ref|YP_966800.1| diguanylate cyclase [Desulfovibrio vulgaris DP4]
 gi|46449632|gb|AAS96282.1| GGDEF domain protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|120562629|gb|ABM28373.1| diguanylate cyclase [Desulfovibrio vulgaris DP4]
 gi|311233799|gb|ADP86653.1| diguanylate cyclase [Desulfovibrio vulgaris RCH1]
          Length = 487

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 17/185 (9%)

Query: 88  SILKELFIS------YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           S+++ L ++      Y  I   +  D L+ L N  +F   L         Y   ++++  
Sbjct: 291 SVMRHLTLALRNAVVYREIKLQADHDALTQLHNRRSFDHRLAEEVDRHQRYGMPMTLLML 350

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK +ND +GHP GD V+  ++  +     T  F  R GGEEF      +  +   I
Sbjct: 351 DIDHFKAVNDTYGHPAGDAVLREVAQTMRNACRTTDFAARYGGEEFCVILPHTDGKCGRI 410

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGR 252
            A  LRK + +S++ +  G +I +T+S G+A      P+    ++  AD ALY AK +GR
Sbjct: 411 FAERLRKRLASSRVEV-DGKTIAVTVSIGLATLSAAAPLSPERLVCEADGALYAAKAAGR 469

Query: 253 NRVVC 257
           N +VC
Sbjct: 470 N-IVC 473


>gi|26990419|ref|NP_745844.1| sensory box protein [Pseudomonas putida KT2440]
 gi|24985387|gb|AAN69308.1|AE016568_3 sensory box protein [Pseudomonas putida KT2440]
          Length = 503

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 83/185 (44%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKL-SIVFFDI 136
                   E   ++ +I  ++  D L+GL N + F   L         N KL + +  D+
Sbjct: 256 LFVAEDATEELAAHAQIHHMAHHDALTGLPNRTLFHERLRQALLRGSENAKLTAALCLDL 315

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-IL 195
           D FK IND+ GH  GDK++  L  +L         + RLGG+EFA    G   ++AA   
Sbjct: 316 DNFKNINDSLGHAFGDKLLRELGKRLRRELREHDTLARLGGDEFAVVLTGLEGRDAACNT 375

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
           A  L K I  S      G    + +S GIA           ++  AD ALY AK++GRNR
Sbjct: 376 AQRLIKAI--SPPFRIEGHQFAVGVSIGIAIAPDDHDQAEQLLGYADMALYQAKRNGRNR 433

Query: 255 VVCFS 259
             CF 
Sbjct: 434 YECFD 438


>gi|332872991|ref|ZP_08440952.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6014059]
 gi|332738835|gb|EGJ69701.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6014059]
          Length = 228

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 105/218 (48%), Gaps = 6/218 (2%)

Query: 50  LFYIGLTPFYGLEYILVENLSL--VIISITISLLLGYISGSIL-KELFISYNRISQLSRI 106
           + Y  L  F  + +       L  ++  I   L+  +I   IL  +       I +LS+I
Sbjct: 5   ISYAPLFNFTAMRHAQTNPFWLGSMLFFIMPILVACFILFEILLTQWRQRETYIQRLSQI 64

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ +LN  +  + L + +E+    +++  DID+FK+IND +GH  GD+V+  ++  L 
Sbjct: 65  DPLTNVLNRRSLNTHLEALHEQQFDYAVILLDIDHFKKINDIYGHHQGDQVLIEIAQCLS 124

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   +GR GGEEF      +   +A  +A   R+ ++   I  +    IH++ S G
Sbjct: 125 ENLRNEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRQALQELTIFNNQNIQIHVSASFG 184

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           I+          +I +ADQALY  K SGRN+V  F  +
Sbjct: 185 ISSSAFANDPYLVIRQADQALYAVKASGRNQVRTFHQL 222


>gi|238893927|ref|YP_002918661.1| hypothetical protein KP1_1864 [Klebsiella pneumoniae NTUH-K2044]
 gi|238546243|dbj|BAH62594.1| hypothetical protein KP1_1864 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 379

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 66/276 (23%), Positives = 122/276 (44%), Gaps = 33/276 (11%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIF---IANIFLFYIGLTPF------ 58
            L++ LC      S S + F+ ++++ F+  +  ++    +  ++  + G+T F      
Sbjct: 107 LLALSLC-----WSLSNYCFIFFWTLPFAWPLLVILMTTGLTALYHHWPGITAFMLPLWV 161

Query: 59  ----YGLEYILVENLSLVIISITISLLLGYISGSILK----------ELFISYNRISQLS 104
                G++      +  +I+    + +L Y    + +          E      R+  ++
Sbjct: 162 TALLAGIQLHYHTEIRFLILWAIFTAILLYGRRILQRWYDEAWDTHQENMQLIQRLESIA 221

Query: 105 RIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
             D L+G  N  A  + L         L+++  D+DYFK+ ND +GH  GD+ ++ ++  
Sbjct: 222 NQDALTGTANRRALNAYLAAIWQQKTPLALMMIDVDYFKRYNDRYGHQAGDECLSSVAQV 281

Query: 162 LVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-IT 219
           L +        V R GGEEF     G S   A  +A  +++ I  + +  ++      +T
Sbjct: 282 LKMAVRAEGDLVARYGGEEFVVVLPGVSLAHATAIAERIQQKIREAGLPHAASAVASEVT 341

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S GI       PI T+I RAD ALY AK +GRN+ 
Sbjct: 342 VSIGIVASDGTVPIETLIARADSALYQAKNNGRNQW 377


>gi|197117720|ref|YP_002138147.1| response receiver-modulated diguanylate cyclase [Geobacter
           bemidjiensis Bem]
 gi|197087080|gb|ACH38351.1| response receiver-modulated diguanylate cyclase [Geobacter
           bemidjiensis Bem]
          Length = 306

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 10/177 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
           S+  EL  +  ++ +L+ ID L+ L N                   E LS+V  DIDYFK
Sbjct: 126 SLQDELKKANEQLKRLTNIDHLTNLFNRRYLTEVLESEFFRARRNRENLSLVIIDIDYFK 185

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GH  GD V+A ++              R GGEEF     G+S +   ++A  LR
Sbjct: 186 NVNDTYGHQNGDVVLASVAGLAQKQLRAYDSAARYGGEEFVLVLPGTSLEGGKMVAERLR 245

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255
           + +       S    + +TISAG+A       + I ++  +AD+ALY AK++GRNRV
Sbjct: 246 QAVLEFAFP-SPMEDLTLTISAGVATFPSPSIDNIDSLFRQADEALYRAKQTGRNRV 301


>gi|120611288|ref|YP_970966.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1]
 gi|120589752|gb|ABM33192.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1]
          Length = 743

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 80/182 (43%), Gaps = 10/182 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           + +      RI  L+  D L+GL N +                   L++VF D+D+FK +
Sbjct: 299 INDRKHDQERIYWLAHYDPLTGLPNRTLLAERAQHAIRVAQENGTPLAVVFLDLDHFKHV 358

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+ GH VGD ++  ++ +L  V      V RLGG+EF     G++   AA +A  L++ 
Sbjct: 359 NDSLGHRVGDALLVEIAKRLRAVVRDRDTVSRLGGDEFILLLPGANAHGAARVATKLQEA 418

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             + Q        + +  S GIA          T+   AD A+Y AK  GRN    F+  
Sbjct: 419 --SRQPYQIGHHELTMAPSMGIALFPDDGCDFDTLTQSADVAMYRAKLDGRNTYRFFTPE 476

Query: 262 EN 263
             
Sbjct: 477 MQ 478


>gi|78484742|ref|YP_390667.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78363028|gb|ABB40993.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2]
          Length = 555

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 108/221 (48%), Gaps = 13/221 (5%)

Query: 48  IFLFYIGLTPFYGLEYILVENLSLVIISITISLL-LGYISGSILKELFISYNRISQLSRI 106
           + + Y   T F       ++N++ ++I I + +  + ++  S   +  +   +   L+  
Sbjct: 336 LLISYTPRTYFTQKLKNQLQNMASLLIGIIVLMGGIAFLFASNRHQKQLLQQKARYLAYH 395

Query: 107 DCLSGLLNHSAFISSLGSYN--------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+GL N  A   + G +N        +  S+ F D+D FK IND +GH VGD+V+  +
Sbjct: 396 DSLTGLYNRYALTQTEGQHNLLANKSDNDSYSVFFLDLDGFKPINDTYGHQVGDQVLQTI 455

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDLRKIIENSQINISSGPSIH 217
           + +L         V R+GG+EFA     + ++ A  +  + L K IE   I +    ++H
Sbjct: 456 ASRLKNTVRKEDIVVRVGGDEFAIITYHTVDRVAIQIFGDRLIKAIEK-PIQLDD-KTLH 513

Query: 218 ITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  S G+A      + ++ +I  AD A+Y AKKSG+ ++  
Sbjct: 514 LGTSIGVASYPQNGDTLNQLIDLADAAMYKAKKSGKGKLCF 554


>gi|127513951|ref|YP_001095148.1| diguanylate cyclase [Shewanella loihica PV-4]
 gi|126639246|gb|ABO24889.1| diguanylate cyclase [Shewanella loihica PV-4]
          Length = 362

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 71/254 (27%), Positives = 111/254 (43%), Gaps = 15/254 (5%)

Query: 14  CHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI 73
            H     +  P              ++ + F    ++ Y  +     + + +    +++ 
Sbjct: 102 AHSLYWATLIPPFAFFLLGRQRGSLVSLIAFGVCAYIVYNQIQEARPVTFGMGALFNVIE 161

Query: 74  ISITISLLLGYISG---SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125
           +SI   LL  +  G   S  ++L     +I +L+  D L+GL N      +L  Y     
Sbjct: 162 VSIAHILLFRFYEGTRSSAYRQLGERNAKIQKLAETDKLTGLYNREKLDITLEEYVLQSR 221

Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                 S++  D+DYFKQIND  GH  GD+V+  L+D L  +     F+ R GGEEF   
Sbjct: 222 HRQTPFSLLILDVDYFKQINDAHGHLTGDRVLVQLADSLRSLCREGDFLARWGGEEFVIL 281

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              +       +A  LR+ I   +     G S+  TIS G A+    +   T++ RAD A
Sbjct: 282 LPETQLSICVAVAEQLRQDIAAQKF---DGQSL--TISLGAAQLREDDTTKTLVNRADNA 336

Query: 244 LYVAKKSGRNRVVC 257
           LY AK +GRNRVV 
Sbjct: 337 LYQAKHTGRNRVVA 350


>gi|256822275|ref|YP_003146238.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Kangiella koreensis DSM 16069]
 gi|256795814|gb|ACV26470.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Kangiella koreensis DSM 16069]
          Length = 861

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 13/189 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
           G  + E      +I  +++ D L+GL N       +         ++   +++F D+D+F
Sbjct: 415 GVDVTETKQFEQQIQHMAQHDSLTGLPNRLLLNDRINQSLALSLRHHHNGALLFIDLDFF 474

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND+ GH  GDK++  ++ +L     +   V RLGG+EF       S+ EA    + +
Sbjct: 475 KNINDSLGHMTGDKLLIEVAKRLEDNVRSGDTVARLGGDEFIIQLSELSDVEAEAELDAI 534

Query: 200 ---RKIIENSQINIS-SGPSIHITISAGIAERCHKEPISTII-YRADQALYVAKKSGRNR 254
              +K+I+        +G S+HIT S G+           +I  RAD A+Y AK  GRN 
Sbjct: 535 TVAKKLIQTLTQEFQINGQSLHITASIGVLVYPRDADSHELIMQRADTAMYHAKAKGRNG 594

Query: 255 VVCF-SDIE 262
              F SD+E
Sbjct: 595 YAVFKSDME 603


>gi|237808077|ref|YP_002892517.1| diguanylate cyclase with PAS/PAC and GAF sensors [Tolumonas auensis
           DSM 9187]
 gi|237500338|gb|ACQ92931.1| diguanylate cyclase with PAS/PAC and GAF sensors [Tolumonas auensis
           DSM 9187]
          Length = 543

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 89/178 (50%), Gaps = 11/178 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           ++ L  S  +  +L+  D L+GL     F   L           + L+++F D+D FK +
Sbjct: 368 VEALRQSEEKHRRLAHYDVLTGLPTRVLFSDRLKQAMRSAKRNKKNLALMFLDLDKFKPV 427

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRK 201
           ND FGH VGD+++  ++ +++        V R+GG+EF       ++ E A  +A  +R+
Sbjct: 428 NDTFGHAVGDRLLKEVASRMLGCVRESDTVCRIGGDEFVILLHDVADAESAFNVAEKIRQ 487

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
            +  +Q    +G  ++I+ S GIA          T+   AD A+Y AK++GR++   F
Sbjct: 488 AL--NQPFKLAGHQMNISCSIGIALYPENGVDERTLTKNADMAMYRAKENGRDQAQVF 543


>gi|170727840|ref|YP_001761866.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella woodyi ATCC 51908]
 gi|169813187|gb|ACA87771.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella woodyi ATCC 51908]
          Length = 1012

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + E   + + I + +  D L+ L N    +  LG          +  +++F D+D+FK
Sbjct: 561 SDITEKKQAEHIIWKQANYDPLTSLPNRRMLLEYLGTELLKSDRSKQHFALMFLDLDFFK 620

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
           ++ND  GH +GD ++   + +L         V RLGG+EF          +    +A  +
Sbjct: 621 EVNDALGHDIGDLLLVETAKRLKGCIRESDVVARLGGDEFTVVLSSIADHKGVERVAEKI 680

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
              +  S+       + +I+ S GI       + I +++  ADQA+Y AK  GRNR   F
Sbjct: 681 LARL--SEPFSLGSETAYISASIGITLYPDDAQTIDSLLKHADQAMYAAKGLGRNRYHYF 738

Query: 259 SDIENNTC 266
           +       
Sbjct: 739 TPSMQEYA 746


>gi|168259727|ref|ZP_02681700.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205350547|gb|EDZ37178.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 570

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 11/203 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+ +  T  LL+ + +   ++K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 +  S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKAQAQQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
            AD+ LY AK+SGRNR+ C SD 
Sbjct: 542 LADKRLYYAKQSGRNRI-CASDA 563


>gi|54298413|ref|YP_124782.1| hypothetical protein lpp2477 [Legionella pneumophila str. Paris]
 gi|53752198|emb|CAH13630.1| hypothetical protein lpp2477 [Legionella pneumophila str. Paris]
          Length = 273

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 87/205 (42%), Gaps = 14/205 (6%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           E I  EN   ++ S+    +   IS  +L+E       +   S  D L+GL N      +
Sbjct: 72  EEINKENNQEILASMMGEQIALGISNIMLRET------LRNQSLRDVLTGLYNRRYLNEA 125

Query: 122 LGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L     +       L+++  DID+FKQ ND FGH  GD VI   ++ L  V      V R
Sbjct: 126 LDRELNRCARKSLSLAVLMLDIDHFKQFNDKFGHEAGDMVIQAFANVLRQVTRKEDIVCR 185

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
            GGEEF         + A   A  +   +    +         ITIS G+     H   +
Sbjct: 186 YGGEEFILIIPEIDLEAALQRAQSIHDAVSRIHLRYGGNALTQITISIGLTMYPAHGNDM 245

Query: 234 STIIYRADQALYVAKKSGRNRVVCF 258
             +I  AD ALY AK SGRN+ V +
Sbjct: 246 QDLITAADNALYEAKNSGRNKTVLY 270


>gi|330951652|gb|EGH51912.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 630

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 101/214 (47%), Gaps = 19/214 (8%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +G   +L  ++  + ++ T  LL+   +   + EL  +  +I  L+  D L+GL N +  
Sbjct: 245 HGAPLVLDISVEFITLNNTACLLM---NARDIGELKNAQAQIQHLAYHDPLTGLPNRALL 301

Query: 119 ISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           +  L          N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         
Sbjct: 302 LDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 361

Query: 172 VGRLGGEEFAAAALGSS------EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
           V RLGG+EF     G         ++   LA++LR ++         G  + +T S G+ 
Sbjct: 362 VARLGGDEFVVLICGLEGSQDEVTRQVRELADNLRNLLAEPMF--LDGHRLQVTPSIGVV 419

Query: 226 ERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
                    + ++ RAD ALY AK  GRN    F
Sbjct: 420 LIPDDGLTPADLLKRADIALYRAKDCGRNASQFF 453


>gi|254480904|ref|ZP_05094150.1| GGDEF domain protein [marine gamma proteobacterium HTCC2148]
 gi|214038699|gb|EEB79360.1| GGDEF domain protein [marine gamma proteobacterium HTCC2148]
          Length = 610

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 103/231 (44%), Gaps = 11/231 (4%)

Query: 37  IFIATVI---FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
           IF+AT I    I  ++L  + L P   +  +L   +S+      +   L         +L
Sbjct: 371 IFLATAINDLLIDLVYLDSVRLAPLGFVAILLAMAVSMANRFTAMYSKLESEVAERTADL 430

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNF 146
             +  R+++ +R+D L+GLLN   F               +  S+V  D+D FK  ND  
Sbjct: 431 SAANRRLAEAARVDHLTGLLNRRGFTEEAETEIRRMFRSGKSFSLVLTDVDNFKSFNDRH 490

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD V+  ++  L         + R GGEEF      +  + AA LA  LR+ I  +
Sbjct: 491 GHVCGDHVLKRMASILEERTRDVDRIARWGGEEFILLLPETETEGAANLAEKLRESIAEN 550

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                    + IT++ GIA     E + T I RAD ALY  K+ GRN+V+ 
Sbjct: 551 VFEF-DNQRLKITMTFGIASFRRGESLDTCIARADTALYHGKEGGRNKVMI 600


>gi|117617601|ref|YP_858659.1| GAF domain/GGDEF domain/EAL domain-containing protein [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117559008|gb|ABK35956.1| gaf domain/GGDEF domain/eal domain protein [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 761

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 94/182 (51%), Gaps = 12/182 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK-LSIVFFDIDYFKQ 141
           LK+      R+   +  D L+ L N +  ++ L         Y     S++F D+D+FKQ
Sbjct: 317 LKQHQELERRLQFDALHDPLTQLPNRALLMNHLNHAMTHFHRYKSPGFSLIFIDVDHFKQ 376

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND  GH  GD+++  +S +L         V RLGG+EF      S +E++ + + N + 
Sbjct: 377 VNDTLGHSAGDQLLKEMSRRLQTCIRQNDMVARLGGDEFVIYLDNSKTEEDISPVLNRII 436

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
             +  S      G  + IT+S G+A    +   IS ++++AD A+Y AK++GR+R+V +S
Sbjct: 437 SRL--SYPFRLMGNELGITVSLGVASVSEQTSDISQLLHQADLAMYQAKRNGRSRIVSYS 494

Query: 260 DI 261
           + 
Sbjct: 495 EE 496


>gi|120601359|ref|YP_965759.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris
           DP4]
 gi|120561588|gb|ABM27332.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris
           DP4]
          Length = 827

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 86/177 (48%), Gaps = 9/177 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDY 138
           S   + E       + + +  D L+G+ N   F        +    ++  L+++  DID+
Sbjct: 630 SARDITERKNLEAALLREATTDPLTGVRNRRQFFVDANREFARALRHDSGLAVLMLDIDH 689

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND +GH  GD+V+   +   V         GRLGGEEFAA    +S +EA   A  
Sbjct: 690 FKNVNDLYGHQAGDEVLRAFAACCVEALRAYDVFGRLGGEEFAALLPAASPEEAMETAER 749

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           LRK +E   + +  G ++  T+S G+      +     ++ RAD+ALY AK  GRNR
Sbjct: 750 LRKRVERRSV-VYEGTALQCTVSVGVTSLAAADLGFDDMLRRADRALYAAKDHGRNR 805


>gi|152984161|ref|YP_001347656.1| hypothetical protein PSPA7_2284 [Pseudomonas aeruginosa PA7]
 gi|150959319|gb|ABR81344.1| hypothetical protein PSPA7_2284 [Pseudomonas aeruginosa PA7]
          Length = 525

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 8/174 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            +         +  L+  D L+GL N  +F+            ++     +  DID+FK 
Sbjct: 346 DISRRKAMEQELRLLASTDTLTGLHNRHSFLHQAELMLKAAERFHHPCVALMLDIDHFKS 405

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH  GD+ +  +++ L         +GRLGGEEFAA     S  +A  +A  LR 
Sbjct: 406 INDGHGHLTGDRALQRVAETLRQGLREVDLLGRLGGEEFAAMLPEISLDQALDVAERLRA 465

Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
            +E  +++   G  + +T+S G+A R    + + +++ RAD ALY AK  GRNR
Sbjct: 466 GVEALRVSNPDGEPLRMTVSIGVALRKDVGDDLESLLVRADSALYQAKSGGRNR 519


>gi|90022538|ref|YP_528365.1| cellulose binding, type IV [Saccharophagus degradans 2-40]
 gi|89952138|gb|ABD82153.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 443

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 58/224 (25%), Positives = 101/224 (45%), Gaps = 30/224 (13%)

Query: 64  ILVENLSLVIISITISLLLGYISGSI---LKELFISYNRI--------------SQLSRI 106
           +L   + ++  ++  SLL+ Y    +   LK+       +               +L++ 
Sbjct: 222 VLYRAIVILWAAVVFSLLI-YRQVRLNIQLKQKAQQQEELININKLLNLQTQKFEELAKT 280

Query: 107 DCLSGLLNH----SAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+ N           L ++       S++  DID+FK  ND  GH VGDKV+   +
Sbjct: 281 DMLTGVANRLGVREYLFEGLNNWRNNQSPFSLILIDIDHFKLFNDTHGHDVGDKVLKGAA 340

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           +           V R GGEEF      +   +A  +A +LR  + +++I       + +T
Sbjct: 341 EIFRNSVRNTDLVARWGGEEFIVICPNTDTHQATTVAENLRTRLASAEIF----NGLKVT 396

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            S G+A   +   +  +  +AD+ALY AK++GRN+VV  S + N
Sbjct: 397 ASFGVASM-NTPSLEHLFKQADEALYSAKEAGRNKVVVSSTLAN 439


>gi|309779288|ref|ZP_07674050.1| response regulator WspR [Ralstonia sp. 5_7_47FAA]
 gi|308921846|gb|EFP67481.1| response regulator WspR [Ralstonia sp. 5_7_47FAA]
          Length = 371

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 81/178 (45%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+GL N       L             LS +  D+D FK  N
Sbjct: 184 QQLLEANLELRRLTNSDGLTGLANRRYLDEYLSAEWRRGAREGTTLSFLMIDVDNFKLYN 243

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+ +  +   +            R GGEEFA    G+S +    LA  +R  
Sbjct: 244 DTYGHVAGDEALKRIGSTVEACLGRPGDLAARFGGEEFAVVLPGNSAEGLKQLAEKIRSA 303

Query: 203 IENSQI-NISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IE  Q+ ++ S    ++T+S G  +    H  P +T+I  AD ALY AK  G+NR V 
Sbjct: 304 IEALQVPHMHSSTGGYVTVSIGGAVVTPMHDVPTTTLIEAADLALYQAKHEGKNRAVI 361


>gi|254254253|ref|ZP_04947570.1| hypothetical protein BDAG_03548 [Burkholderia dolosa AUO158]
 gi|124898898|gb|EAY70741.1| hypothetical protein BDAG_03548 [Burkholderia dolosa AUO158]
          Length = 596

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 10/187 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFF 134
           +  + G+ L+    + + +  L+R D L+GL N  +F   L     +        S++F 
Sbjct: 406 VSVMLGAQLRRRIRAESELVLLARTDGLTGLNNRRSFGEVLDREWRRARRARSVFSLLFV 465

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAA 193
           D+D FK  ND +GH  GD  +A ++  +      P     R GGEEF      + + +AA
Sbjct: 466 DVDRFKAYNDTYGHQAGDDALAAVARCIGDNIRQPVDTAARYGGEEFVVLLPDTPQTDAA 525

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSG 251
            +A  +R  I+   +  +      +T S G+A    ++      +I  AD+ALY AK +G
Sbjct: 526 RIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPEQEGEAGAVIKAADEALYYAKATG 585

Query: 252 RNRVVCF 258
           RN+V  F
Sbjct: 586 RNKVAAF 592


>gi|77165487|ref|YP_344012.1| PAS sensor diguanylate cyclase/phophodiesterase [Nitrosococcus
           oceani ATCC 19707]
 gi|254434956|ref|ZP_05048464.1| PAS fold family [Nitrosococcus oceani AFC27]
 gi|76883801|gb|ABA58482.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosococcus oceani ATCC 19707]
 gi|207091289|gb|EDZ68560.1| PAS fold family [Nitrosococcus oceani AFC27]
          Length = 811

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 60/215 (27%), Positives = 99/215 (46%), Gaps = 10/215 (4%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G EY + ++ +  I S T  +L   +  S + E      +I+  +  D L+GL+N   F 
Sbjct: 344 GQEYAIQDSAA-PISSRTGEVLGVVLVFSDVTEARHMTRQITHQATHDSLTGLVNRREFE 402

Query: 120 SSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L          + + ++ +FD+D FK IND  GH  GD+++  +S+ L         +
Sbjct: 403 HRLERVLATLKAESAEYALCYFDLDRFKVINDTCGHVAGDELLRQVSEVLRGQIRKRDTL 462

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
            RLGG+EF       S ++A  +A  + K IE+ Q     G S  I +S G+        
Sbjct: 463 ARLGGDEFGVLLEHCSLKQAQRVATAIHKAIEDFQFTW-EGKSFRIGVSIGLVPITKASM 521

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            I+ ++  AD A Y AK  GRNR+  + + +    
Sbjct: 522 GIAVVLKAADTACYAAKNKGRNRIHVYHETDKELA 556


>gi|121998228|ref|YP_001003015.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Halorhodospira halophila SL1]
 gi|121589633|gb|ABM62213.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Halorhodospira halophila SL1]
          Length = 698

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S L EL  S  R+   +  D L+GL N   F   +           E+L+++F D+D+FK
Sbjct: 252 SDLTELKRSQERLQFQAYHDALTGLANRLLFKDRMARALERSRQSEEQLAVLFIDLDHFK 311

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
            +ND+ GH  GD+++  ++ +L    G    + RLGG+EF+         ++A   A  +
Sbjct: 312 DVNDSLGHTAGDRILRQVAHRLQARLGADDTLARLGGDEFSICLAEIRDHRDALACAETV 371

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + +E  +    S        S GI+      E +  +I  AD AL+ AK  GRN    +
Sbjct: 372 HQELE--RPFQYSQRWFQCRCSIGISMYPDNGETVEELIRNADSALHNAKAEGRNTTCFY 429

Query: 259 SDIENNTC 266
           ++      
Sbjct: 430 AEELTERA 437


>gi|67920838|ref|ZP_00514357.1| PAS:GGDEF [Crocosphaera watsonii WH 8501]
 gi|67856955|gb|EAM52195.1| PAS:GGDEF [Crocosphaera watsonii WH 8501]
          Length = 906

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 11/192 (5%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFD 135
             ++   + ++  S  ++   +  D L+ L N     + L           +KL++VF D
Sbjct: 462 AVVNIHDITQIKESEQKLYYQAHHDTLTNLPNRMLMNTRLEQSIQQATRKGDKLAVVFID 521

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAI 194
           +D FK IND+ GH  GD ++  L+ +L         V R+ G+EF          Q A +
Sbjct: 522 LDRFKNINDSLGHRAGDSLLEQLAQRLCQQRRKSDTVARISGDEFVVILEDIKDTQHAGM 581

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           +   L +  E  +  I  G +I +T S G++        ++T++  AD A+Y AK+ GRN
Sbjct: 582 VVGKLMRTFE--EPFIIEGRTIKMTSSMGLSLFPDDGTDVATLLRNADAAMYRAKEDGRN 639

Query: 254 RVVCFSDIENNT 265
               +     +T
Sbjct: 640 TYCFYRKEMTST 651


>gi|293605900|ref|ZP_06688270.1| response regulator [Achromobacter piechaudii ATCC 43553]
 gi|292815687|gb|EFF74798.1| response regulator [Achromobacter piechaudii ATCC 43553]
          Length = 341

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 89/177 (50%), Gaps = 11/177 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L  S   + +L+  D L+GL N   F   L +  ++       +S++  D+D+FK  N
Sbjct: 157 QQLLESNMELRRLTNSDGLTGLGNRRYFDEYLNAEWQRARRDQREISMLMIDVDHFKAYN 216

Query: 144 DNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+ +  +++ +      +     R GGEEFA    GS    A + A  LR+ 
Sbjct: 217 DTYGHIAGDEALKRVANTIFASCDRSTDLAARFGGEEFALVLPGSPAGSARLAAEKLRRA 276

Query: 203 IENSQINISSGPSIH-ITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +E  QI      S   +T+S G A       +P + +I  AD+ LY AK++GRNRVV
Sbjct: 277 VEAMQIPQKDTGSGPWLTVSIGTATAIPVPDQPCTDLIQVADRGLYQAKRNGRNRVV 333


>gi|83589092|ref|YP_429101.1| diguanylate cyclase [Moorella thermoacetica ATCC 39073]
 gi|83572006|gb|ABC18558.1| diguanylate cyclase (GGDEF domain) [Moorella thermoacetica ATCC
           39073]
          Length = 357

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 111/226 (49%), Gaps = 16/226 (7%)

Query: 45  IANIFLFYI--GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102
           +AN   + I  G     G  Y L+  + LV+ +   + L   +  +   E   +  R++ 
Sbjct: 125 LANPSSWAILGGWVAIAGFFYYLM--VGLVVKARQAASLQAEVEYTR-HEYQEACKRLAA 181

Query: 103 L---SRIDCLSGLLNHSAFISS----LGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDK 153
           +   +  D L+G+ N+  F+ +    L S  +   L+++  DIDYFK+IND +GH  G++
Sbjct: 182 MEMAAITDDLTGIYNYRYFVQAFSNLLNSRQQPRYLAVLMLDIDYFKEINDAYGHLTGNR 241

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+A L+  L         V R GGEEFA     +    A  +A  +RK I       + G
Sbjct: 242 VLAELATILKECTREQDVVTRFGGEEFALILPDTDYHGALQVAERIRKAIAEHTFQ-AEG 300

Query: 214 PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +IH+T+SAG+A           II RAD+ALY AK +GRN V  +
Sbjct: 301 TAIHVTVSAGVAVWPVDGTDKKDIIARADRALYQAKTTGRNSVCAY 346


>gi|315126888|ref|YP_004068891.1| sensory box/GGDEF protein [Pseudoalteromonas sp. SM9913]
 gi|315015402|gb|ADT68740.1| sensory box/GGDEF protein [Pseudoalteromonas sp. SM9913]
          Length = 323

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 61/183 (33%), Positives = 98/183 (53%), Gaps = 9/183 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           KEL     ++ Q+S+ D L+ L N   +   L     +        S++ FDID+FK++N
Sbjct: 142 KELEELNKKLEQVSQTDSLTQLANRGHWEHLLHQEFLRTKRNEGCCSLLIFDIDHFKKVN 201

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+FGH  GD+ +  ++  L          GR GGEEF    L + +Q A + A  LR++I
Sbjct: 202 DDFGHSAGDEALRHIASLLKTALRETDIAGRYGGEEFVVTLLDTDKQGAIVFAERLRQLI 261

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           E S    +   ++H+ IS GIA    + +     I  AD+ALY +K++GRN+V  ++DI+
Sbjct: 262 ETSPAKYNE-HTVHMAISVGIACFDDQFKDHERWIEAADKALYHSKETGRNKVSVYADIK 320

Query: 263 NNT 265
           N+ 
Sbjct: 321 NDA 323


>gi|313201890|ref|YP_004040548.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Methylovorus sp.
           MP688]
 gi|312441206|gb|ADQ85312.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. MP688]
          Length = 821

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 11/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E+      + + +  D L+GL N +     +         +N   S+ F DID FK+
Sbjct: 374 DITEIRQYQEALERQANYDTLTGLANRNLLKERMQQAISEARRHNWTFSVAFIDIDNFKR 433

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLR 200
           +ND+ GH  GD++I  L  +L         V RLGG+EF       S  E    +   +R
Sbjct: 434 VNDSMGHSAGDELIRLLGQRLQSCLRDGDTVARLGGDEFVLLLTSQSLDESIHTVVQRIR 493

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I N    I +G  + +T S G+A   H      T++  AD A+Y AK SG N    ++
Sbjct: 494 NTIIN--PFIITGRQLTVTCSIGLANFPHDGRNADTLLSNADSAMYQAKASGSNNFRFYA 551

Query: 260 DIEN 263
              N
Sbjct: 552 KEMN 555


>gi|254561633|ref|YP_003068728.1| diguanylate cyclase [Methylobacterium extorquens DM4]
 gi|254268911|emb|CAX24872.1| putative diguanylate cyclase with GGDEF motif; putative membrane
           protein [Methylobacterium extorquens DM4]
          Length = 498

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 94/208 (45%), Gaps = 12/208 (5%)

Query: 61  LEYILVENLSLVIISITI----SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           +E    E  +++ +++ +    ++LL  + G  L+        +++L++ D L+GL N  
Sbjct: 288 IEAEWRETAAVIGLAVLVLCGSTVLLSLLFGRELRRSAAMQAELARLAQTDVLTGLPNRR 347

Query: 117 AFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGT 168
            F +               L+++  D D+FK+ ND +GH VGD V+  L+D L   V   
Sbjct: 348 HFETVFAQAWGTSRRTGAPLALILIDADHFKRYNDRYGHAVGDAVLRGLADSLSASVRRP 407

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
              V R+GGEEFA    G+    A  ++  + + I    +         +T+S G+A   
Sbjct: 408 GDLVARVGGEEFAVLLPGTDHDGAMRISETIHRAIAGFAMPSVGIGPGTVTVSLGLAVDS 467

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256
                     RAD ALY AK  GRN+  
Sbjct: 468 GGGTAEDFYRRADVALYEAKAGGRNQTQ 495


>gi|239833976|ref|ZP_04682304.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239822039|gb|EEQ93608.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 461

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 9/173 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDN 145
           L  S NR   ++  D L+GL N     +               LS++  D D+FK+IND 
Sbjct: 285 LRQSLNRTITMAVTDSLTGLHNRRYLDTHMPVLLTRAMGRERPLSVIMLDFDHFKRINDQ 344

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GD V+   + +L         + R GGEEF      S  + A  +A  +R  +  
Sbjct: 345 FGHDAGDDVLREFAARLRKNIRGMDLLCRYGGEEFVVVLPDSDVEAARAVAERIRTAVSE 404

Query: 206 SQINISSG-PSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  ++++G   +++T+S GIA  R   +    +  R D ALY AKK GRNR+V
Sbjct: 405 APFSVANGKHKVNLTVSMGIAGLRLIGDSAEALFSRTDAALYQAKKGGRNRIV 457


>gi|27364806|ref|NP_760334.1| GGDEF domain-containing protein [Vibrio vulnificus CMCP6]
 gi|27360951|gb|AAO09861.1| FOG: GGDEF domain protein [Vibrio vulnificus CMCP6]
          Length = 479

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 64/182 (35%), Positives = 94/182 (51%), Gaps = 11/182 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           +S + + E       +  L+  D L+G  N  +F+            +N  LSI+  DID
Sbjct: 292 MSITDISERKKLEAMLRNLAATDPLTGAFNRRSFMEQAEKSIRTCQRWNCPLSIMILDID 351

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FKQ ND++GH  GD V+  L     +       +GRLGGEEFA    G  E+EA  +A 
Sbjct: 352 HFKQFNDSYGHAAGDLVLVELVKMADLSTREIDIIGRLGGEEFAVVLPGLGEKEAFEVAK 411

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNR 254
            LR ++EN Q+N    P + +TIS G+A     E   P+  ++ +AD+ LY AK  GRN 
Sbjct: 412 RLRSVVENMQVNYEQQP-LQMTISIGVATLQPSELNTPLEQLMKQADEGLYYAKAHGRNC 470

Query: 255 VV 256
           V+
Sbjct: 471 VI 472


>gi|83310566|ref|YP_420830.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945407|dbj|BAE50271.1| Response regulator [Magnetospirillum magneticum AMB-1]
          Length = 634

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 9/179 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           E       + + S  D ++GL N       +             L+++  D+D+FK +ND
Sbjct: 450 ETKRLMETLRESSLSDPMTGLNNRRFLEEYVDTLVANVHRRKSALTVMMLDLDHFKMVND 509

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD V+  LS  L         V R GGEEF    + +   EA  +A  +R ++E
Sbjct: 510 TYGHDAGDAVLKALSKVLRQAVRASDLVIRFGGEEFLIVLVDTPSAEADQVAEKIRALVE 569

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              +  +   +I  TIS G+++     +     +  AD ALY AK++GRNRVV F++  
Sbjct: 570 ALVVQ-TGTVTIRKTISIGLSDFPTDSDTFWQAVKFADVALYQAKENGRNRVVRFNESM 627


>gi|37681146|ref|NP_935755.1| hypothetical protein VV2962 [Vibrio vulnificus YJ016]
 gi|37199897|dbj|BAC95726.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 479

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 64/182 (35%), Positives = 94/182 (51%), Gaps = 11/182 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           +S + + E       +  L+  D L+G  N  +F+            +N  LSI+  DID
Sbjct: 292 MSITDISERKKLEAMLRNLAATDPLTGAFNRRSFMEQAEKSIRTCQRWNCPLSIMILDID 351

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FKQ ND++GH  GD V+  L     +       +GRLGGEEFA    G  E+EA  +A 
Sbjct: 352 HFKQFNDSYGHAAGDLVLVELVKMADLSTREIDIIGRLGGEEFAVVLPGLGEKEAFEVAK 411

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNR 254
            LR ++EN Q+N    P + +TIS G+A     E   P+  ++ +AD+ LY AK  GRN 
Sbjct: 412 RLRSVVENMQVNYEQQP-LQMTISIGVATLQPSELNTPLEQLMKQADEGLYYAKAHGRNC 470

Query: 255 VV 256
           V+
Sbjct: 471 VI 472


>gi|315181990|gb|ADT88903.1| GGDEF family protein [Vibrio furnissii NCTC 11218]
          Length = 369

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 112/249 (44%), Gaps = 11/249 (4%)

Query: 23  SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL 82
           +P   +       S+    + F     L    +  +  +E  +   ++LV++ IT++L++
Sbjct: 111 TPVVAIALLPRKISLPFIAIQFAVFNGLILSNMQTWQPVEDNVASYINLVVVWITLALII 170

Query: 83  GYISGSIL---KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYF 139
            Y   S L   +++  +  ++ +L+  D L+G+ N       +        +   D+D F
Sbjct: 171 WYFEASRLHAYRKMNEANLKLEKLAMTDSLTGVFNRHYIERRIAHSTRPFHVAMIDVDNF 230

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND FGH  GD V+  ++D L   F     VGR GGEEF       S+++   L    
Sbjct: 231 KLVNDQFGHVAGDGVLKGIADVLKQSFANIGIVGRWGGEEFIVLLTEGSDEDIYRLTEQA 290

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC-- 257
           R  +  +      G  + ++IS G+A           + + D+ALY AK  G+NR+V   
Sbjct: 291 RAKVAATPF----GIQVPVSISIGLAHHDLG-DYEATLRKVDKALYSAKSEGKNRIVSML 345

Query: 258 -FSDIENNT 265
            + DI++ +
Sbjct: 346 QYEDIQHKS 354


>gi|189426376|ref|YP_001953553.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
 gi|189422635|gb|ACD97033.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
          Length = 693

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 83/187 (44%), Gaps = 11/187 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
           G  + +   +   I QL+  D L+GL N S     L          N  L+++F D+D F
Sbjct: 232 GRDITDRKKAEQEILQLAHYDTLTGLPNRSLLQDRLSQALSLANRGNVTLAVLFLDLDRF 291

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K +ND FGH +GD ++  +S +L         V R+GG+EF           +A  +A  
Sbjct: 292 KHVNDAFGHQIGDLLLQEVSRRLKDCVRATDTVSRIGGDEFVIILTNLIKCSQAGSIAAK 351

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  I   S++    G  ++   S GIA        + T++  AD A+Y AK SGR     
Sbjct: 352 I--ISSMSRLFQLGGHELYSGTSIGIALYPTDGNDVDTLLKHADMAMYQAKASGRGTFKF 409

Query: 258 FSDIENN 264
           FS   N 
Sbjct: 410 FSPEHNE 416


>gi|311106854|ref|YP_003979707.1| response regulator receiver modulated diguanylate cyclase
           [Achromobacter xylosoxidans A8]
 gi|310761543|gb|ADP16992.1| response regulator receiver modulated diguanylate cyclase
           [Achromobacter xylosoxidans A8]
          Length = 337

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 11/177 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L  S   + +L+  D L+GL N   F   L +  ++       +S++  D+D+FK  N
Sbjct: 157 QQLLESNMELRRLTNSDGLTGLGNRRYFDEYLNAEWQRARRDGREISMLMIDVDHFKAYN 216

Query: 144 DNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+ +  +++ +      +     R GGEEFA    G+    A + A  LR+ 
Sbjct: 217 DTYGHIAGDEALKRVANTIFASCDRSTDLAARFGGEEFALVLPGTPAGSARLAAEKLRRA 276

Query: 203 IENSQINISS-GPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +E  QI     G    +T+S G A      ++P + +I  AD+ LY AK+ GRNRVV
Sbjct: 277 VEALQIPQKDTGDGPWLTVSIGTATAVPQGEQPCTDLIQVADRGLYQAKRQGRNRVV 333


>gi|237653888|ref|YP_002890202.1| response regulator receiver modulated diguanylate cyclase [Thauera
           sp. MZ1T]
 gi|237625135|gb|ACR01825.1| response regulator receiver modulated diguanylate cyclase [Thauera
           sp. MZ1T]
          Length = 642

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 9/174 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL IS  R+ + +  D L+GL N    I ++         +    S++  D+D FK IND
Sbjct: 462 ELSISNRRLQEAALTDPLTGLPNRRRAIEAMEAEWATATRHGRAFSVMIVDLDGFKTIND 521

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD  +   +  L         + R GG+EF      +  + A ++A  LR  ++
Sbjct: 522 THGHDVGDMALRQAAATLRGALRAQDLICRTGGDEFLVLCPDTDLKAAMLVAERLRVAVQ 581

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
            S +  + GP I +T S G+A R      +  +I  AD ++Y AK+ GRN +  
Sbjct: 582 ASPVE-TGGPQIFLTASVGVAMRVPAMGSVDALIKCADDSVYRAKQRGRNCIAA 634


>gi|326319533|ref|YP_004237205.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323376369|gb|ADX48638.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 407

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 80/179 (44%), Gaps = 14/179 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQIND 144
           +L  +   I +L+  D L+GLLN    +  +     ++S       I   D+D+FK +ND
Sbjct: 213 DLARALEHIRELATHDELTGLLNRRHMLELMRLEQRRVSRSDFPLVIALLDVDHFKAVND 272

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+V+   +  +         + R GGEEF      +  + A  L   +R+ + 
Sbjct: 273 THGHAAGDRVLQAFAQAVRRCVRDGDVISRWGGEEFVLMLCNTPPEAARALLERVREAVA 332

Query: 205 NSQINISSGP-------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              +    G         + IT+S G A    + PI   + RAD+ALY AK  GRNR V
Sbjct: 333 ALSVPADRGDGAGASAGHLRITVSIGFALHRPRHPIEETLERADRALYAAKLGGRNRTV 391


>gi|323699238|ref|ZP_08111150.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio sp. ND132]
 gi|323459170|gb|EGB15035.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           desulfuricans ND132]
          Length = 883

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 82/176 (46%), Gaps = 9/176 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQ 141
            + +       +  L+  D L+G  N   F             Y   L+++  DIDYFK 
Sbjct: 707 DVTKRIELEREMKLLATTDALTGANNRHQFFALGAVEVQRAKRYALPLTVLMLDIDYFKS 766

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH  GD V+  LS  +          GRLGGEEFA     +   E A  A  LR+
Sbjct: 767 INDTYGHAAGDLVLKALSASVSATLRASDIFGRLGGEEFAVILPQTDIDEGAEAAERLRE 826

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            +    + +    SI  T+S G+   C  +  +  ++ RAD+ALY AK+ GRNRVV
Sbjct: 827 TLAGLAVEVGD-ESITFTVSMGVTRICAGDKTVEDVLNRADEALYKAKRMGRNRVV 881


>gi|257057938|ref|YP_003135826.1| diguanylate cyclase with PAS/PAC sensor [Cyanothece sp. PCC 8802]
 gi|256588104|gb|ACU98990.1| diguanylate cyclase with PAS/PAC sensor [Cyanothece sp. PCC 8802]
          Length = 668

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 98/210 (46%), Gaps = 19/210 (9%)

Query: 67  ENLSLVIISITISLLLG----YISGSILKELFIS------YNRISQLSRIDCLSGLLNHS 116
           E L L+ ++++   L      +++ ++ K++ I+         + + S  D L+GL N  
Sbjct: 453 ETLGLLYLNLSNVELFNPSQQHLAEAVSKQIAIAFANLKLRETLEEQSLRDPLTGLFNRR 512

Query: 117 AFISSLGS--------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
               S+           +  L ++  DID+FKQ NDNFGH  GD V+  +++ L      
Sbjct: 513 YLEISINRELNTIIQDQDYSLGLIMLDIDHFKQFNDNFGHEAGDLVLQTVANCLQNHIRQ 572

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
                R GGEEF      +S  +    A  +R+ I+  +I   S P   IT S G+A   
Sbjct: 573 SDIACRFGGEEFMIILPRASLDKTLERAEKIRESIKQLKIEYKSQPLDSITASFGVAAFP 632

Query: 229 H-KEPISTIIYRADQALYVAKKSGRNRVVC 257
                +  +   AD+ALY AKK GR+RVVC
Sbjct: 633 QNGTTLHELFIDADKALYQAKKQGRDRVVC 662


>gi|94501819|ref|ZP_01308331.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Oceanobacter sp. RED65]
 gi|94426040|gb|EAT11036.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Oceanobacter sp. RED65]
          Length = 642

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 60/182 (32%), Positives = 92/182 (50%), Gaps = 13/182 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQI 142
           L+EL  ++ ++  +S  D L+ + N   F             +   ++++  DID+FK++
Sbjct: 458 LEELSNAHEKLKNISVTDALTKIHNRYFFDQHWRSEFKRAHRHKMSIALIILDIDHFKKV 517

Query: 143 NDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           NDNFGHP GD  +  ++  +          V RLGGEEFA    G+ E  A  +A  +R 
Sbjct: 518 NDNFGHPAGDLCLQKVAQSIRIQANRESDLVCRLGGEEFAVILPGTDEMGAYEVAEKIRH 577

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNRVVC 257
            IE   I+   G +I IT+S GI+    ++        +  +ADQALY AK +GRNR V 
Sbjct: 578 TIEKRHISW-EGKTIKITVSIGISAMTPRKSDEKMRNIMFNQADQALYQAKGNGRNRTVI 636

Query: 258 FS 259
           F 
Sbjct: 637 FE 638


>gi|330504863|ref|YP_004381732.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
 gi|328919149|gb|AEB59980.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
          Length = 715

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 99/197 (50%), Gaps = 14/197 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
           ++++  +  S+++ L   + ++   +  D L+GLLN   F       ++ +    +++++
Sbjct: 257 AMVVIALDMSVVRNL---HAQLESQAVTDSLTGLLNRRGFHQALESALARIERSGQRVAV 313

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQ 190
           ++ D+D FK+IND+ GH VGD+++  + +QL         + R+GG+EF A        +
Sbjct: 314 LYLDLDGFKRINDSLGHDVGDQLLRRVGEQLKACLRPYDSLARIGGDEFTALLDNLGHPE 373

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           +AA +A  L +++     +   G    +  S GIA      + +  ++  AD A+Y AK+
Sbjct: 374 DAAKVAEKLIELVSVR--HTLDGVDFTLGASVGIACFPECGQSVEGLLRSADMAMYEAKR 431

Query: 250 SGRNRVVCFSDIENNTC 266
           +GR +   FS   N   
Sbjct: 432 AGRQQYRFFSPEMNGRA 448


>gi|254457004|ref|ZP_05070432.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207085796|gb|EDZ63080.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 334

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 60/175 (34%), Positives = 88/175 (50%), Gaps = 11/175 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           +++       ++ L+  D L+GL N       L            ++SI+F DID FK I
Sbjct: 164 IQQELSKNIELNALAITDKLTGLYNRVKLDKVLDLEINKMVKLQAEISIIFIDIDRFKPI 223

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH +GDKV+   S  L         VGR GGEEF      ++ + +  LA +LRKI
Sbjct: 224 NDTYGHQIGDKVLQSFSQVLKNNIRKTDIVGRWGGEEFLIICHEANIEGSLHLAENLRKI 283

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IEN+           +T S G+A     + I +++ RAD+ALY AK +GRN+V  
Sbjct: 284 IENTSFEYIKE----LTASFGVASFEDGDSIDSLVERADKALYKAKHNGRNKVCF 334


>gi|162661179|gb|EDQ48693.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 866

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 122/246 (49%), Gaps = 20/246 (8%)

Query: 28  MIYFS--IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI 85
           ++YF   + +     T++    I+L    L      E+I ++++ +V I I  ++L+   
Sbjct: 11  VVYFDRKLLYGFGSLTILLYCLIYLTERSLYQKPIQEFIQIQSVFIVSIMIGHTILVRVK 70

Query: 86  SGSI-LKELFISYNRI-------SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLS 130
                L+ +  S  ++        +L +ID L+GL NH AF       +     Y   L 
Sbjct: 71  EFMRHLESVMKSEQQLLVERTISDKLLKIDALTGLYNHKAFHEYLEALLEQCEKYQLPLQ 130

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +   DID FK++NDN+GH VGD V+  ++ +++       F  R GGEEFA      + +
Sbjct: 131 LAIIDIDNFKKVNDNYGHRVGDVVLKEVASKVMSTMTPNDFAARYGGEEFAIIMADKTLE 190

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           EA  +A  LR+ I  +++  +  P   +T+S G+      +   ++  +AD ALY AK++
Sbjct: 191 EAERMAEQLRERIARTELPHTVKP---VTVSIGLCNFQQGDDKESLFRKADMALYQAKRT 247

Query: 251 GRNRVV 256
           G+N+VV
Sbjct: 248 GKNKVV 253


>gi|157960094|ref|YP_001500128.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157845094|gb|ABV85593.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
          Length = 456

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 75/280 (26%), Positives = 126/280 (45%), Gaps = 39/280 (13%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG-----------------L 61
           LE F     M+   I F + IA ++  A +      L+PF G                 L
Sbjct: 178 LEQFYGQMSMLTAFIGFVLAIAALMMTAKVGGVNAILSPFIGGKIARRQTAAGYFVPAIL 237

Query: 62  EYILVENL----------SLVIISITISLLLGYISGSILKELFISYNRISQL----SRID 107
            Y+L+++L           +V I   + L++ Y S    +++ +   ++ QL    +  D
Sbjct: 238 GYLLIKSLCAIDGELCGIFVVTICWFVILMISY-SALFQEKMDLERRQMEQLLTLAAMND 296

Query: 108 CLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+GL N   F       ++ +     +  ++  D+D+FK+IND  GH +GD+V+  LS 
Sbjct: 297 QLTGLANRRKFHEFAQEELNRVQRNKSQFWVLVMDVDFFKKINDTAGHDMGDQVLIELSK 356

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            L         V R+GGEEF+     +++Q A  +A  +R  IE+ +I   +     IT 
Sbjct: 357 VLKNSVRAVDLVSRMGGEEFSIILSDTTKQGAERVAESIRSSIESIKIKGWTDIYGPITA 416

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           S G A     + +   +  AD ALY AK+ GRN+V   ++
Sbjct: 417 SIGGATSDGADKLENTLKIADSALYQAKQRGRNQVYFAAE 456


>gi|86751742|ref|YP_488238.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
 gi|86574770|gb|ABD09327.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
          Length = 904

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 82/186 (44%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYF 139
           +   + E      +I+ L+  D L+ L N S F   L             ++++ DID F
Sbjct: 460 THEDITERIRDSEKIAYLAHYDSLTDLPNRSLFRQRLERELHPGRGSAACTLLYIDIDEF 519

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILAND 198
           K IND  GHP+GD+++  ++ +L    G   FV RLGG+EFA  A   +   +A  LA  
Sbjct: 520 KSINDTLGHPIGDELLKQVAVRLRECVGASDFVARLGGDEFAVIATSAADSDQATALAER 579

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + + I         G  +    S GIA      E I  +I  AD A+Y AK  GR     
Sbjct: 580 ILQTIRA--PYHCLGHHLSTDASIGIAIAPGDGEDIDQLIKNADLAMYSAKAGGRRTFRF 637

Query: 258 FSDIEN 263
           F    +
Sbjct: 638 FEPAMD 643


>gi|62180561|ref|YP_216978.1| hypothetical protein SC1991 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224583515|ref|YP_002637313.1| hypothetical protein SPC_1728 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|75482657|sp|Q57N14|YEDQ_SALCH RecName: Full=Cellulose synthesis regulatory protein
 gi|62128194|gb|AAX65897.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224468042|gb|ACN45872.1| hypothetical protein SPC_1728 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322715037|gb|EFZ06608.1| Cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 570

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 11/203 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+ +  T  LL+ + +   ++K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 +  S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
            AD+ LY AK+SGRNR+ C SD 
Sbjct: 542 LADKRLYYAKQSGRNRI-CASDA 563


>gi|320155197|ref|YP_004187576.1| GGDEF domain-containing protein [Vibrio vulnificus MO6-24/O]
 gi|319930509|gb|ADV85373.1| GGDEF domain [Vibrio vulnificus MO6-24/O]
          Length = 479

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 63/182 (34%), Positives = 94/182 (51%), Gaps = 11/182 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           +S + + E       +  L+  D L+G  N  +F+            +N  LSI+  DID
Sbjct: 292 MSITDISERKKLEAMLRNLAATDPLTGAFNRRSFMEQAEKSIRTCQRWNCPLSIMILDID 351

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FKQ ND++GH  GD V+  L     +       +GRLGGEEFA    G  E+EA  +A 
Sbjct: 352 HFKQFNDSYGHAAGDLVLVELVKMADLSTREIDIIGRLGGEEFAVVLPGLGEKEAFEVAK 411

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNR 254
            LR ++EN Q++    P + +TIS G+A     E   P+  ++ +AD+ LY AK  GRN 
Sbjct: 412 RLRSVVENMQVHYEQQP-LQMTISIGVATLQPSELNTPLEQLMKQADEGLYYAKAHGRNC 470

Query: 255 VV 256
           V+
Sbjct: 471 VI 472


>gi|296159771|ref|ZP_06842593.1| diguanylate cyclase [Burkholderia sp. Ch1-1]
 gi|295889985|gb|EFG69781.1| diguanylate cyclase [Burkholderia sp. Ch1-1]
          Length = 591

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 9/180 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
             + +E     + +   +  D L+ LLN  AF S          +   +L+++ FDID+F
Sbjct: 402 QQLERERGRLIHELKATAETDFLTHLLNRRAFESRARLSCAERNAAEPELALIMFDIDHF 461

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND +GH  GD  +  ++     +      V R GGEEFA  +      +A  +A  L
Sbjct: 462 KKINDTYGHATGDHALQLVARLCREICRQSDVVARWGGEEFAVLSRVQDAAQALAVAERL 521

Query: 200 RKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R+ I  ++I  S G    IT S G+  A  C    +  +  RAD+ LY AK++GR+R+V 
Sbjct: 522 RRRISETRIPFSGGEGFTITASFGVAFASACDSRDVDRLFRRADRLLYQAKEAGRDRIVA 581


>gi|254502053|ref|ZP_05114204.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
 gi|222438124|gb|EEE44803.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
          Length = 398

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 82/170 (48%), Gaps = 8/170 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           +L  ++ ++   +  D L+G+LN  A  + L             L ++  D+D+FK IND
Sbjct: 223 QLMEAHQKLKDQAMHDALTGVLNRGAIFNLLESELCKAARTQAPLVVIMADLDHFKSIND 282

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD+V+  ++  +         VGR GGEEF     G+    A  +A  +R  + 
Sbjct: 283 RFGHLAGDEVLRTVAATIKDTLRGYDHVGRYGGEEFLILLSGTDTNMAVDVAERIRGTVA 342

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           N +I    GP I  TIS G+A          +I RAD ALY AK+ GRN 
Sbjct: 343 NLEIMHKDGP-IRPTISQGLALSDPSGTAEQVIARADAALYKAKEDGRNC 391


>gi|189349796|ref|YP_001945424.1| signal transduction GGDEF/EAL domain protein [Burkholderia
           multivorans ATCC 17616]
 gi|189333818|dbj|BAG42888.1| signal transduction GGDEF/EAL domain protein [Burkholderia
           multivorans ATCC 17616]
          Length = 860

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 111/226 (49%), Gaps = 20/226 (8%)

Query: 58  FYGLEYILVENLSLVIISITISL---LLGYISG-----SILKELFISYNRISQLSRIDCL 109
           ++G  +   +N S     +TIS    + G+I       S +  L  +  ++ +++  D L
Sbjct: 258 WHGELWCRRKNGSQFAALLTISAVPDMQGHIEHYVAMFSDITALKENQQQLERVAHYDLL 317

Query: 110 SGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GL N       L             L++VF D+D FK++ND  GH VGDK+++ LS ++
Sbjct: 318 TGLPNRLLLGDRLKQAIRQTRRRGMHLAVVFIDLDGFKEVNDQHGHAVGDKLLSVLSRRM 377

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITIS 221
             V      + RLGG+EF A  +   E   ++    L ++IE +   +  G ++  ++ S
Sbjct: 378 TQVLREGDTLARLGGDEFVAVLVDLPENSFSL--PILDRLIEVAAQPVPIGDALCEVSAS 435

Query: 222 AGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            G++     E I    ++ +ADQA+Y AK++G+NR   F   ++ T
Sbjct: 436 IGVSYYPQGEDIDADQLLRQADQAMYRAKQAGKNRYHVFDSEKDRT 481


>gi|330878877|gb|EGH13026.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 763

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 69/271 (25%), Positives = 117/271 (43%), Gaps = 41/271 (15%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN-------------LSLVIISI 76
           Y  +   +F   V  +    L  + L     L  ++ EN             L L I +I
Sbjct: 185 YAGMLHQMFRYGVSLLLGAGLLTMHLMGMRALRLVIPENAELHIPGTENSQQLGLTIAAI 244

Query: 77  TISLLLGYISGS------------------ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           T+ ++ G IS +                  +L +L  +   + Q++  D L+ L+N   F
Sbjct: 245 TLLIIAGSISAAMADKKLQGKEHDLQRVNTLLSQLDQARVSLQQVAHYDPLTNLINRRGF 304

Query: 119 -----ISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                   L   + K  L+++F DID+FK+IND+ GH  GD+++  +++++         
Sbjct: 305 NQIFAEKLLEHTHSKGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDV 364

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           V R GG+EF         +EA  LA+ +   ++ +     +G  + +T S GIA      
Sbjct: 365 VARFGGDEFCILLSIPDYEEARHLAHRVMDKMKETI--ALAGRRMVMTTSIGIAVFPRDG 422

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                ++  AD ALY +K +GRNRV  FS  
Sbjct: 423 STCDELLKHADLALYQSKGNGRNRVNFFSPA 453


>gi|326317390|ref|YP_004235062.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374226|gb|ADX46495.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 745

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 80/182 (43%), Gaps = 10/182 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           + +      RI  L+  D L+GL N +                   L++VF D+D+FK +
Sbjct: 301 INDRKHDQERIYWLAHYDPLTGLPNRTLLAERAQHAIRVAQENGTPLAVVFLDLDHFKHV 360

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+ GH VGD ++  ++ +L  V      V RLGG+EF     G++   AA +A  L++ 
Sbjct: 361 NDSLGHRVGDALLVEIAKRLRAVVRDRDTVSRLGGDEFILLLPGANAHGAARVATKLQEA 420

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             + Q        + +  S GIA          T+   AD A+Y AK  GRN    F+  
Sbjct: 421 --SRQPYQIGHHELTMAPSMGIALFPDDGSDFDTLTQSADVAMYRAKLDGRNTYRFFTPE 478

Query: 262 EN 263
             
Sbjct: 479 MQ 480


>gi|254784824|ref|YP_003072252.1| GGDEF/EAL domain-containing protein [Teredinibacter turnerae T7901]
 gi|237687209|gb|ACR14473.1| GGDEF/EAL domain protein [Teredinibacter turnerae T7901]
          Length = 608

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 14/221 (6%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L P Y  E  +  +   VI ++ + +    ++ S+L++     + ++     D L+GL N
Sbjct: 117 LLPGYAGEPEIQASSDDVIYTVGVDITEDELAESVLRDHK---SHLNFAIFHDPLTGLAN 173

Query: 115 HSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
            S F       I+        L+++  D+D FK +ND+ GH  GD+ +  ++  LV    
Sbjct: 174 RSLFYDRVNKSIARAKRTKSSLALMLLDLDRFKNVNDSLGHEAGDRYLKAVAQHLVDELR 233

Query: 168 TPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
               V RLGG+EF       +  +    +AN L   ++  Q  +  G  I  T S GI+ 
Sbjct: 234 DTDTVARLGGDEFVVVLENVTCSESIEAIANKLLGCLQ--QPVVIQGHPISCTASIGISV 291

Query: 227 RCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             H  + I  ++  AD A+Y AK +G+NR   +    +++ 
Sbjct: 292 FPHDGDSIDQLLKHADTAMYRAKAAGKNRAQFYVSAMSDSA 332


>gi|327193248|gb|EGE60154.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium etli CNPAF512]
          Length = 843

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 11/182 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
              + EL  S  +I Q++  D L+ L N S F   L           ++  ++  DID+F
Sbjct: 399 ARDVTELNASRQKIHQMAFYDPLTALPNRSLFNDRLRQMITSAVSRGQRAGVMLIDIDHF 458

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
           K +ND  GHPVGD+++   + +L         V RLGG+EFA          +   +A+D
Sbjct: 459 KVVNDTMGHPVGDELLCQAAARLNASVRDYDTVARLGGDEFAILLPDLRPGDDLGRVASD 518

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           +      +   +  G  + ++ S GIA         + ++  AD A+Y+AK+SGRN    
Sbjct: 519 ILDKFREN--FLLDGKEVFVSCSVGIALYPDDSAEANDLVKYADSAMYLAKRSGRNSFRF 576

Query: 258 FS 259
           +S
Sbjct: 577 YS 578


>gi|229592969|ref|YP_002875088.1| putative signaling GGDEF/EAL domain-containing protein [Pseudomonas
           fluorescens SBW25]
 gi|229364835|emb|CAY52875.1| putative signalling GGDEF/EAL domains containing conserved protein
           [Pseudomonas fluorescens SBW25]
          Length = 1247

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 60/234 (25%), Positives = 105/234 (44%), Gaps = 19/234 (8%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS-------LLLGYIS-GSILKELF 94
            F A ++        + G      +N  L    +TIS       L+  +++  + +  L 
Sbjct: 738 AFYAAMWHQLTAQGHWQGEISNRRKNGELYPSWLTISAVRNREQLITHFVAVFADISSLK 797

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147
           ++  R+   +  D L+GL N + F S L +         ++ +++F D+D FK IND+ G
Sbjct: 798 LAQARLDYQAHHDPLTGLPNRTLFESRLQAALNGHQETGKQGAVLFLDLDRFKHINDSLG 857

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206
           HP+GD ++  ++ +L         V RLGG+EF     G     +A  LAN L      +
Sbjct: 858 HPIGDLLLKDIAVRLKEQLRDIDTVARLGGDEFIILLPGLQHASDAQHLANKLLACF--T 915

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               +      I+ S G +        ++T++  AD A+Y +K  GRNRV  ++
Sbjct: 916 PPFQAGEHEFFISASIGTSLYPEDGTDVATLVKNADAAMYRSKAKGRNRVESYT 969


>gi|95928325|ref|ZP_01311073.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
 gi|95135596|gb|EAT17247.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
          Length = 403

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 8/168 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
             ++ +L+  D ++GL +  AF+            Y    S +  DID+FK++ND +GH 
Sbjct: 227 NQKLKELASTDVVTGLQSRRAFMEEAKSLFQIAERYQRPFSFLIIDIDHFKKVNDTYGHL 286

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  L   +         +GR+GGEEFA     +     A L   L + +  ++I 
Sbjct: 287 GGDVVLVELGKIMSSCLRATDILGRIGGEEFAVILPETGPDHTAELIERLLEKVRTTEIR 346

Query: 210 ISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
           I     + +T+S G+A        +  ++  AD+ALY AK  GRNR  
Sbjct: 347 IDDDTLVSVTVSIGVATVPPLPIHVGKVMAAADKALYQAKSDGRNRCC 394


>gi|315126116|ref|YP_004068119.1| hypothetical protein PSM_A1022 [Pseudoalteromonas sp. SM9913]
 gi|315014629|gb|ADT67967.1| hypothetical protein PSM_A1022 [Pseudoalteromonas sp. SM9913]
          Length = 1000

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 104/226 (46%), Gaps = 19/226 (8%)

Query: 58  FYGLEYILVENLSLVIISITISLL-------LGYI-SGSILKELFISYNRISQLSRIDCL 109
           + G   I  +N   + +S+++S +         Y+ S   +  +  S  ++ QL+  D L
Sbjct: 515 WRGDTLIEAQNKPPIWVSLSVSPIREDGGKITSYVASAQDISFVKESQRKMEQLAYFDTL 574

Query: 110 SGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GL N + F       ++         ++ +FD+D FK+IND  GH  GD+++  ++ +L
Sbjct: 575 TGLANRTFFRMQLRKSMALAERGRYSFALFYFDLDEFKRINDTLGHDAGDQLLVEVATRL 634

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITIS 221
                    + RLGG+EFA    G   Q EA+ +A+ ++K + N  I + S   I ++ S
Sbjct: 635 KQRLRAEDTIARLGGDEFAVLLSGIEHQKEASEVADTIQKTL-NQPIKLGSNEVI-VSAS 692

Query: 222 AGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            GI            ++  AD A+Y AK  GRN    +S   N   
Sbjct: 693 IGITLAPFDSLEEDQLLKHADLAMYEAKAKGRNTFHFYSQDLNAAA 738


>gi|317049092|ref|YP_004116740.1| diguanylate cyclase [Pantoea sp. At-9b]
 gi|316950709|gb|ADU70184.1| diguanylate cyclase [Pantoea sp. At-9b]
          Length = 570

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 58/162 (35%), Positives = 84/162 (51%), Gaps = 8/162 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+    + D ++ LLN       +    +  +  +++  DID+FK++NDNFGH VGD+VI
Sbjct: 400 RLKSEVQTDPMTNLLNRRGLGAVLDYFHAMRQPFAVLALDIDHFKRVNDNFGHDVGDEVI 459

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L         V R GGEEF     G+  +EA  LA  LRK I ++ I+      
Sbjct: 460 KKVAQALRNSARQTDVVCRNGGEEFLMLLPGTPAEEARHLAERLRKNIADNWIDKVG--- 516

Query: 216 IHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +ITIS GIA     K      + +AD ALY AK +GRN V+
Sbjct: 517 -NITISVGIALWQPEKGTQEQSLKQADAALYQAKNAGRNCVM 557


>gi|218675362|ref|ZP_03525031.1| hypothetical protein RetlG_30229 [Rhizobium etli GR56]
          Length = 614

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 88/196 (44%), Gaps = 13/196 (6%)

Query: 77  TISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NE 127
           T   ++  I+ +   E  L +S  ++  L+  D L+G++N  AF  S           N 
Sbjct: 408 TAMAVVSDITATKQAEIALRLSAEQLRNLAETDGLTGIVNRRAFDESFARETAGSARKNT 467

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALG 186
             S++  DID FK  ND +GHP GD+ +  +S  L   V      V R GGEEF      
Sbjct: 468 PFSLLMVDIDRFKAYNDTYGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFVVFLPD 527

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQA 243
           +S + A I+A    + +    I  S      +T S GI+           + ++  AD A
Sbjct: 528 TSAKGAMIVAEQFARRLAKENILHSGSEFGRVTASIGISCATGATLRASPNRLLAEADAA 587

Query: 244 LYVAKKSGRNRVVCFS 259
           LY AK  GRNR++  S
Sbjct: 588 LYEAKTQGRNRILAHS 603


>gi|222109582|ref|YP_002551846.1| PAS/PAC sensor-containing diguanylate cyclase [Acidovorax ebreus
           TPSY]
 gi|221729026|gb|ACM31846.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax ebreus TPSY]
          Length = 890

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 11/179 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + E    +  + +L+ +D L+GL N      +L           + LS+V  DID+FKQ
Sbjct: 708 DVTEQRAQHELLRKLAFMDGLTGLANRRQLDRTLKAEWRRCRRSGQPLSVVMVDIDHFKQ 767

Query: 142 INDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND +GH  GD  +  ++  L   +  +   V R GGEEF           A   A  L 
Sbjct: 768 FNDLYGHQQGDDCLRAVAAALRGGLGRSHDLVARYGGEEFVCLLPECDLDGARAKAQALC 827

Query: 201 KIIENSQINISSGPSIH-ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +   Q+     P    +T+SAG+A      ++    ++ RAD  LY AK +GRNRV 
Sbjct: 828 RAVHARQMEHRGSPIAPVVTVSAGVACVVPGAEDTPEQLLARADANLYRAKAAGRNRVH 886


>gi|71907617|ref|YP_285204.1| diguanylate cyclase/phosphodiesterase [Dechloromonas aromatica RCB]
 gi|71847238|gb|AAZ46734.1| diguanylate cyclase/phosphodiesterase [Dechloromonas aromatica RCB]
          Length = 695

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 13/187 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + E   + ++++ L+  D L+GL N   FI  L         + EKL++++ D+D FKQ+
Sbjct: 256 ISERRQAQSKLNYLAYHDPLTGLANRRCFIERLEESLSEGERHGEKLAVLYIDLDQFKQV 315

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRK 201
           ND+ GH VGD+++  ++ +L         + RLGG+EF      + SE E  +LA   R+
Sbjct: 316 NDSLGHGVGDELLVSVAARLSEHVRLIDMLARLGGDEFICLMEAARSEDEVELLA---RE 372

Query: 202 IIENSQINISSG-PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           II   +     G   + +T S GI+        +  ++  AD A+Y AK  GR     ++
Sbjct: 373 IIAAFEYPFKLGDHELFLTASVGISLCPSDGNSVLDLMRNADTAMYRAKMLGRGNFHFYT 432

Query: 260 DIENNTC 266
                  
Sbjct: 433 AEMTREA 439


>gi|88860451|ref|ZP_01135089.1| putative orphan protein; putative conserved domain
           [Pseudoalteromonas tunicata D2]
 gi|88817649|gb|EAR27466.1| putative orphan protein; putative conserved domain
           [Pseudoalteromonas tunicata D2]
          Length = 963

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 11/190 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           S   +  +  S  ++ QL+  D L+GL N + F       ++     +   ++ +FD+D 
Sbjct: 515 SAQDISFVKESQRKMEQLAYFDTLTGLANRAFFRMQLRKSMALAERGHYAFALFYFDLDE 574

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILAN 197
           FK+IND  GH  GD+++  ++++L         V RLGG+EFA    G  ++ +AA +A 
Sbjct: 575 FKRINDTLGHDAGDQLLLQVANRLKQRLRAEDTVARLGGDEFAVLLSGIDDKSKAAEVAM 634

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVV 256
            +++ I    I + S   I I+ S GI       P    ++  AD A+Y AK  GRN   
Sbjct: 635 IIQETISQ-PIKLGSNEVI-ISASIGITMAPDDSPEEDQLLKHADLAMYEAKAKGRNTYH 692

Query: 257 CFSDIENNTC 266
            ++   N   
Sbjct: 693 FYNQELNAAA 702


>gi|218441038|ref|YP_002379367.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp.
           PCC 7424]
 gi|218173766|gb|ACK72499.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp.
           PCC 7424]
          Length = 663

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 81/169 (47%), Gaps = 8/169 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
              +   S  D L+GL N     +        +   N  L ++ FDID+FK+ ND +GH 
Sbjct: 493 RETLQNQSFRDVLTGLYNRRYLEASIVRELHRVSRSNSTLGVILFDIDHFKRFNDTWGHD 552

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  + + L           R GGEEF      +S ++    A+ L+  I++ Q++
Sbjct: 553 AGDAVLKAVGNLLQESTRESDIACRYGGEEFLIIMPDASLEDTQRRAHQLQIEIKHLQVS 612

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             S     IT+S G+A    H      ++  AD+ALY AK+ GR+R+VC
Sbjct: 613 TRSQQLESITVSMGVASFPEHGLNYELLLRTADEALYRAKQQGRDRIVC 661


>gi|83643551|ref|YP_431986.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631594|gb|ABC27561.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 584

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 73/261 (27%), Positives = 113/261 (43%), Gaps = 30/261 (11%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTP--FYGLEYILVENLSLVIISITIS 79
           F+ HT ++  S+  +  IA  + +  +     G  P  +Y   +  +    L  +  T  
Sbjct: 309 FTYHTMIVPISLL-TFVIAAQLLLMGVLALMAGSRPARYYMTAWTALLIGVLAYMLKTFG 367

Query: 80  LL-----------LGYISGSILKELFIS--YNRISQLSRIDCLSGLLNHSAFIS------ 120
           LL           +G ++  +L  L +S   N + + +  D L+GL N   F        
Sbjct: 368 LLPHNVLTQNGFQIGSLTEMVLLSLALSSRVNELQRKTYTDALTGLFNRRHFDDKFATEF 427

Query: 121 -SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                  + L+++  DID FKQ ND +GH VGD  +  ++  L      P    R GGEE
Sbjct: 428 HRAQQSKQPLTLLVIDIDCFKQFNDTYGHNVGDHALKEVARILAKGVRKPNCPCRYGGEE 487

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTII 237
           FA     +    A  LAN LR  +E       +     ++IS G+A   H E    + + 
Sbjct: 488 FAVILPNTDHDAAMSLANRLRVKVEE-----ETESGYKLSISVGVASMAHDEFDCPNKLF 542

Query: 238 YRADQALYVAKKSGRNRVVCF 258
            RAD ALY AK+ GRNRV+ +
Sbjct: 543 ERADYALYTAKQQGRNRVIDY 563


>gi|66045521|ref|YP_235362.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63256228|gb|AAY37324.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 555

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 90/205 (43%), Gaps = 20/205 (9%)

Query: 81  LLGYISGSILKE---------LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124
           L+G+I   I  E         L      +  ++  D L+GL N   F             
Sbjct: 326 LIGHIHSRIRAEDQLLDSQAALIQLNQHLELIASEDKLTGLANRRRFDQFLEVEFKRARR 385

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAA 183
               LS++  D D+FK+ ND++GH  GD+ +  L+  +   +        R GGEE A  
Sbjct: 386 ERSPLSLILIDADHFKRYNDHYGHLAGDECLIALARVVEQFIRRPSDVAARYGGEEIAVV 445

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRA 240
             G+ E  A  +A  + + I + QI   + P   +TIS G+A     +       +I  A
Sbjct: 446 LPGTDESNARQVAEKILRAIRDEQIEHPASPFGIVTISLGVATFVGTDRQLDQRGLIELA 505

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D+ALY AK  GRNRV   S+I  +T
Sbjct: 506 DRALYAAKSQGRNRVNVASEIATST 530


>gi|134298519|ref|YP_001112015.1| diguanylate cyclase [Desulfotomaculum reducens MI-1]
 gi|134051219|gb|ABO49190.1| diguanylate cyclase [Desulfotomaculum reducens MI-1]
          Length = 574

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 22/212 (10%)

Query: 66  VENLSLVIISITISLL-----LGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSA 117
           V+ LS  I +++ +LL     L  +   + +   +L    N++ ++S  D L+ L N   
Sbjct: 342 VQELSRAINNMSANLLEKTTQLNNLIKQLEQNRDDLHEEKNKLVKISITDELTDLYNRRY 401

Query: 118 FISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
               L          N+ +S++  D+D FK +NDN+GH  GD V+   ++ L        
Sbjct: 402 LNKELLRVIDLCSTLNKNISLLMLDLDRFKAVNDNYGHATGDTVLKEFAEILRRCSRGTD 461

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI------ 224
            VGR GGEEF       S +  A++A  +R+ I N   +  +  ++H+T+S G+      
Sbjct: 462 VVGRFGGEEFVIIIPFVSAERVALIAERIRQEISNFVFDEGNS-NLHVTVSIGVVTVKSL 520

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                 E    +I +AD+ LY AK SGRN+VV
Sbjct: 521 VTSTTAEVAEKLIKKADENLYQAKNSGRNKVV 552


>gi|53716656|ref|YP_105660.1| GGDEF domain-containing protein [Burkholderia mallei ATCC 23344]
 gi|254173944|ref|ZP_04880607.1| GGDEF domain protein [Burkholderia mallei ATCC 10399]
 gi|254200460|ref|ZP_04906825.1| putative diguanylate cyclase [Burkholderia mallei FMH]
 gi|254204485|ref|ZP_04910838.1| putative diguanylate cyclase [Burkholderia mallei JHU]
 gi|52422626|gb|AAU46196.1| GGDEF domain protein [Burkholderia mallei ATCC 23344]
 gi|147748072|gb|EDK55147.1| putative diguanylate cyclase [Burkholderia mallei FMH]
 gi|147754071|gb|EDK61135.1| putative diguanylate cyclase [Burkholderia mallei JHU]
 gi|160694991|gb|EDP84961.1| GGDEF domain protein [Burkholderia mallei ATCC 10399]
          Length = 489

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 13/196 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------- 125
           + ++   ++  Y++ S+ ++   +   +++L+  D L+GL N  A   +L          
Sbjct: 290 VFALIFVVMSAYLAHSLWRK-STAEAALARLAGTDSLTGLYNRRALDETLEREWRRAVGG 348

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAA 184
           +  L+I+F DID+FK+ ND +GH VGD+V+A +S  +          V R GGEEF    
Sbjct: 349 DRPLAILFVDIDHFKRYNDTYGHQVGDEVLATVSRCIAQQAARLGDVVARYGGEEFVVVL 408

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRA 240
             +    A ++A  +R  +    I         +T+S G+A           I+ I+  A
Sbjct: 409 PDTPRGGALVVAERVRLGVRMLGIEHEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAA 468

Query: 241 DQALYVAKKSGRNRVV 256
           DQALY AK  GRNRVV
Sbjct: 469 DQALYRAKADGRNRVV 484


>gi|218515210|ref|ZP_03512050.1| putative sensory box/GGDEF family protein [Rhizobium etli 8C-3]
          Length = 311

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 94/183 (51%), Gaps = 8/183 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKL-----SIVFFDIDYFKQIN 143
           + ++    +   +++  D L+ L N  AF   L + +N        +++  DID FK+IN
Sbjct: 118 MDQVRKELDEYKRIANTDSLTRLSNRRAFDDRLAAVFNNPGMRPVTALLLADIDNFKKIN 177

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHPVGDK++A ++  +       +FV R GGEEFA    G++ +E   +A  +R+ +
Sbjct: 178 DTYGHPVGDKILATVASVIRSNVRRDVFVARAGGEEFALIIEGNTAEEVTAIAERIRRTL 237

Query: 204 ENSQINISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E +    S     +  IT+S GI    + E    +  RAD ALY AK +GRN +V + D 
Sbjct: 238 ETTPFKNSRTRVNYGPITVSIGICMASNAEDAGELYSRADIALYGAKNAGRNCIVLYQDG 297

Query: 262 ENN 264
              
Sbjct: 298 MQK 300


>gi|120555025|ref|YP_959376.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120324874|gb|ABM19189.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 630

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 58/187 (31%), Positives = 85/187 (45%), Gaps = 11/187 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVF 133
           LL        ++L I   ++ +LS  D L+GL N   F             + E LS++ 
Sbjct: 432 LLEERVQERTRDLEILNEQLLELSATDPLTGLKNRGHFDKKFQSDVVHAYRFEETLSLLI 491

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            DID+FK  ND +GH VGD  +  ++D +   V        R GGEEF      + E  A
Sbjct: 492 VDIDHFKGFNDTYGHLVGDDCLKMVADCIKQHVTRPQDLAARYGGEEFVVLLPDTPEAGA 551

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKS 250
             +A  +R+ I+     +S    +H+T+S G+        +    +   AD ALY AK  
Sbjct: 552 CRVAELIREDIQKMAFRVSD-QVLHLTVSIGVCSCAPSQADATKALFACADGALYRAKAE 610

Query: 251 GRNRVVC 257
           GRNRVV 
Sbjct: 611 GRNRVVA 617


>gi|119776121|ref|YP_928861.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119768621|gb|ABM01192.1| diguanylate cyclase [Shewanella amazonensis SB2B]
          Length = 577

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 104/235 (44%), Gaps = 14/235 (5%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
           YF +  S+FI   IF  +   +Y GL+    +    V  + +++ ++ ++ +L Y   + 
Sbjct: 341 YFLLGHSMFI---IFNMSAVFYYKGLSQANQINSHGV-GIGILLEALMMAFILSYRIKT- 395

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQI 142
           L++L      + + +  D ++ L N   F        +   +     +++  DID FK I
Sbjct: 396 LEQLKAKQGELKRQANTDPMTHLFNRRYFDVTSPLLLTEAKATGAHWTLLIIDIDNFKSI 455

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH VGD VI   +  L           R GG+EF    L  +   A  +A  +R  
Sbjct: 456 NDTYGHHVGDLVIIEFAAVLKQNQRPQDIACRFGGDEF-VLLLNCNLDNATRIAERIRAN 514

Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            E   I    G  +H T+S G+       + +   +  AD ALY +K  GRN+VV
Sbjct: 515 TERLPITTQEGEKLHFTVSIGVHPVSSSADNMQEALQGADAALYESKGLGRNKVV 569


>gi|284043232|ref|YP_003393572.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
 gi|283947453|gb|ADB50197.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
          Length = 769

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 56/184 (30%), Positives = 89/184 (48%), Gaps = 6/184 (3%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQIND 144
            + +      +++ L+  D L+GL N  AF   L           ++V  D+D+FK IND
Sbjct: 317 DISDRKRFEGQLAYLADHDALTGLYNRRAFQRELEQRTSEDGRGGAVVVIDLDHFKDIND 376

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+VI  ++  L         +GRLGG+EFA    G S +EA  +  +L +++ 
Sbjct: 377 TLGHAAGDEVIVRVARLLAKRLRKTDVLGRLGGDEFATLLSGVSREEAEAVIAELLRVVR 436

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCFSDIE 262
              + +  G  I +T SAGIA      P+    ++  AD A+Y AK++GR+R     + E
Sbjct: 437 EQSVVVEGGHPIGLTASAGIALFEGDTPLSGEELLVSADIAMYDAKEAGRDRHAISVETE 496

Query: 263 NNTC 266
               
Sbjct: 497 QRQA 500


>gi|209809645|ref|YP_002265184.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238]
 gi|208011208|emb|CAQ81639.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238]
          Length = 712

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 65/194 (33%), Positives = 95/194 (48%), Gaps = 13/194 (6%)

Query: 73  IISITISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--- 127
           +  + + +++  I   + ++  L     ++ QLS  D L+ L N     + L    +   
Sbjct: 522 LFKVLLGVIVAIIGALLYRQKLLKKYNTKLIQLSTYDSLTSLYNRRVIDTHLVKQQKLSL 581

Query: 128 ----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                LS++  DIDYFK+IND FGH  GD+VI  +S  L+    T   VGR GGEEF   
Sbjct: 582 RTDMPLSVIMCDIDYFKKINDTFGHIAGDEVIVNMSALLLNNIRTSDIVGRWGGEEFIII 641

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              +    A +LA  LRK IE       +     IT+S GIA+         ++ +AD A
Sbjct: 642 CPNTHSSGAKVLAECLRKKIEKMP----ATNEQTITMSFGIAQFNENLSYEELLIKADAA 697

Query: 244 LYVAKKSGRNRVVC 257
           LY AK+ GRN+VV 
Sbjct: 698 LYAAKEQGRNKVVI 711


>gi|209515854|ref|ZP_03264716.1| diguanylate cyclase [Burkholderia sp. H160]
 gi|209503702|gb|EEA03696.1| diguanylate cyclase [Burkholderia sp. H160]
          Length = 535

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 58/197 (29%), Positives = 88/197 (44%), Gaps = 10/197 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128
           SL++I     ++L    G+ L+      + + +L+  D L+GL N  A   +L     + 
Sbjct: 334 SLMLIFGIGVIVLSAWLGAELRRRQRVEHELERLAGTDGLTGLPNRRALCETLDREWLRA 393

Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFA 181
                 LS++F DID+FK  ND +GH  GD  +  ++  +  V       VGR GGEEF 
Sbjct: 394 RRTGSILSLLFVDIDHFKAYNDTYGHQAGDVALTAVARCIRRVIQRPGDCVGRYGGEEFI 453

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYR 239
                +    A ++  ++R  I    I         +T S G           +S +I  
Sbjct: 454 VVLPDTDVPGAGVVGENIRAAIGELGIEHVGCKFGRVTASIGATTWRPDLDTDVSVVIRA 513

Query: 240 ADQALYVAKKSGRNRVV 256
           AD+ALY AK  GRN VV
Sbjct: 514 ADEALYTAKAGGRNLVV 530


>gi|253701549|ref|YP_003022738.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M21]
 gi|251776399|gb|ACT18980.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M21]
          Length = 306

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 89/177 (50%), Gaps = 10/177 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
           S+  EL  +  ++ +L+ ID L+ L N                   E LS+V  DIDYFK
Sbjct: 126 SLQDELKKANEQLKRLTNIDHLTNLFNRRYLSEILESEFFRARRNRENLSLVIIDIDYFK 185

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND++GH  GD V+A ++              R GGEEF     G+S Q A ++A  LR
Sbjct: 186 NVNDSYGHQNGDVVLASVAGLAQQQLRAYDSAARYGGEEFVLVLPGTSLQGAEMVAERLR 245

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255
           + +       S    + +TISAG+A       + I ++  +AD+ALY AK++GRNRV
Sbjct: 246 QSVLEFGFP-SPMEDLTLTISAGVATFPSPSIDNIDSLFRQADEALYRAKQTGRNRV 301


>gi|192362269|ref|YP_001982526.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107]
 gi|190688434|gb|ACE86112.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107]
          Length = 322

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 74/272 (27%), Positives = 121/272 (44%), Gaps = 29/272 (10%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI 64
             +    W CH+          F+++ + F +      +F       +    P  G    
Sbjct: 64  FPELSEEWFCHKAQT------VFVLHNATFTTWEQRPYLF------RFPHYRPITGTADY 111

Query: 65  LVENLSLVIISIT------ISLLLGYISGSILKELFI--SYNRISQLSRIDCLSGLLNHS 116
           + +N ++  +  T      I +++  ++ + + ++    +  ++  LSR D L+ L N  
Sbjct: 112 MYQNSTIFPLVNTKGEVDHICVIIYDVTDTAVNKIAQQHANKQLQNLSRTDHLTSLFNRG 171

Query: 117 AFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            +   L         Y    S++  DID+FK+INDN+GH VGD+ I  +S  +       
Sbjct: 172 YWELRLIQEFKRYDRYESPSSLIMLDIDHFKKINDNYGHTVGDEAIRCVSRVIKEQVRDL 231

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RC 228
              GR GGEEF      ++   A ++A  LR IIE   +  + G  IH TIS G+AE   
Sbjct: 232 DIAGRYGGEEFGIILTSTNGDGACVIAERLRSIIEKQTV-YAEGHEIHFTISLGVAELND 290

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           H       I +AD ALY +K+SGRNR    +D
Sbjct: 291 HMHDHRQWIEKADHALYKSKESGRNRCTLSAD 322


>gi|204931366|ref|ZP_03222065.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|157168653|gb|ABV25707.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Weltevreden]
 gi|204319849|gb|EDZ05058.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 570

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 11/203 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+ +  T  LL+ + +   ++K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 +  S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
            AD+ LY AK+SGRNR+ C SD 
Sbjct: 542 LADKRLYYAKQSGRNRI-CASDA 563


>gi|157144712|ref|YP_001452031.1| hypothetical protein CKO_00438 [Citrobacter koseri ATCC BAA-895]
 gi|157081917|gb|ABV11595.1| hypothetical protein CKO_00438 [Citrobacter koseri ATCC BAA-895]
          Length = 520

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 59/186 (31%), Positives = 90/186 (48%), Gaps = 16/186 (8%)

Query: 84  YISGSILKELFIS-----YNRISQL---SRIDCLSGLLNHSAFISSLGSY---NEKLSIV 132
           YI  S L+   +        ++  L   +  D L+GL+N  A    L  Y     + +++
Sbjct: 338 YIEASRLRRALLQGMELIREKMKWLNDQASTDPLTGLVNRRAAEKLLAEYEHQQRQFAVI 397

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID FK +ND FGH +GD  +  L+  L           R+GGEEF      +S + A
Sbjct: 398 SLDIDRFKAVNDTFGHDIGDVTLKALAQLLKRSCRKNDTACRMGGEEFMMFFPETSVEAA 457

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSG 251
           A +A  LRK +  ++I        HITIS G+       + +S  + RAD+ +Y AK++G
Sbjct: 458 ADIAERLRKEVAAAKIETVG----HITISLGVTVWPSGVDSVSQALKRADELMYQAKQAG 513

Query: 252 RNRVVC 257
           RN+VV 
Sbjct: 514 RNQVVA 519


>gi|238790066|ref|ZP_04633844.1| Predicted diguanylate cyclase [Yersinia frederiksenii ATCC 33641]
 gi|238721879|gb|EEQ13541.1| Predicted diguanylate cyclase [Yersinia frederiksenii ATCC 33641]
          Length = 366

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 116/251 (46%), Gaps = 20/251 (7%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL-LLGY--- 84
           +  S+F   FI T+    N   F +   P       L +  S+  I  T+ L L+G+   
Sbjct: 108 LLLSLFTIFFIGTIALSDNFLAFCLHTAPSAFTVIWLDDFHSIFRIIFTLMLPLIGFSLH 167

Query: 85  ---------ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSI 131
                     +  ++  L+    + S LS ID L+GL N     + L +   +      +
Sbjct: 168 HLMLRRSDEFTRKLVARLYNEREKFSDLSMIDPLTGLYNRRGLENKLETLLAQSPGNHYV 227

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK  NDN+GH +GD+ +  ++  +     +   V R GGEEF       SE+ 
Sbjct: 228 LLLDIDHFKAYNDNYGHTMGDQALVRVAAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEY 287

Query: 192 AAILANDLRKIIENSQINISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           A+ LA  +R+ +    I       +   +T+SAGI+     + +S++   AD+ALY AKK
Sbjct: 288 ASQLAERVRQRVLGLDIPHVFNHKVSTTVTLSAGISPLQSYDLVSSL-KAADEALYRAKK 346

Query: 250 SGRNRVVCFSD 260
           +GRN+V    +
Sbjct: 347 NGRNKVAFAEE 357


>gi|241763480|ref|ZP_04761533.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
 gi|241367321|gb|EER61652.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
          Length = 830

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 16/189 (8%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + +   +   I +L+  D L+GL N    +  L           +  +++F D+D FK 
Sbjct: 384 DITDRKRAEQEIERLAFYDALTGLPNRRMLLDRLQRAVAATSRTQQFGALLFIDLDNFKD 443

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA------LGSSEQEAAIL 195
           +ND  GH +GD +++ ++ +L+        V R GG+EF          L  +  +A I+
Sbjct: 444 LNDTLGHDMGDHLLSQVAARLLACVRETDTVARFGGDEFVVMLETLRPELTEAASQAEIV 503

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           A  L   +  +Q     G   + T S GI     +   +  ++ RAD A+Y AK +GRN 
Sbjct: 504 AEKLLASL--NQPFALGGQQHYSTPSIGITLFGDERLSVDELLKRADLAMYQAKGAGRNT 561

Query: 255 VVCFSDIEN 263
              F     
Sbjct: 562 QRFFDPDMQ 570


>gi|237801442|ref|ZP_04589903.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331024301|gb|EGI04358.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 1254

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 15/192 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           S + E   S +RI +L+  D L+ L N + F   L S  ++       + ++F D+D FK
Sbjct: 803 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQQAERQKAWVVLMFLDLDRFK 862

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-----L 195
            IND+ GH  GD+++  ++ +L+        V R+GG+EF      +  +EAA+     +
Sbjct: 863 PINDSLGHAAGDRMLQEMATRLLACVDIDDTVARMGGDEFTLLLQPAITREAALNRAIHV 922

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  +   +      +  G    +T S GIA        +S ++  AD A+Y AK+ G+N 
Sbjct: 923 AERILTSL--VTPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKECGKNN 980

Query: 255 VVCFSDIENNTC 266
              +    N T 
Sbjct: 981 FQFYQADMNATA 992


>gi|28899662|ref|NP_799267.1| putative sensory box/GGDEF family protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|28807914|dbj|BAC61151.1| putative sensory box/GGDEF family protein [Vibrio parahaemolyticus
           RIMD 2210633]
          Length = 396

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 64/183 (34%), Positives = 96/183 (52%), Gaps = 9/183 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           S   + +  +   R+ QLS  D L+GLLN  AFIS+L          ++ LS +  DID+
Sbjct: 196 SVRDITKTHLLEQRLKQLSETDALTGLLNRRAFISNLDNAIIQHTKRSQTLSCLMIDIDH 255

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND+ GH  GD VI  ++     V     F+GRLGGEEFA     ++  +A  +A  
Sbjct: 256 FKDINDSVGHFSGDHVITRIAHVCQGVIRGSDFIGRLGGEEFAVILTDTNAIQAYEVAER 315

Query: 199 LRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +R+ I+ + I       I  T+S G+AE    +     ++  AD+A+Y +K SGRN+V  
Sbjct: 316 IRQAIQAT-ICHVDDVEITTTVSIGVAELNSQQSNAKELLIEADKAMYYSKHSGRNQVTL 374

Query: 258 FSD 260
             +
Sbjct: 375 AYE 377


>gi|167628686|ref|YP_001679185.1| two component diguanylate cyclase [Heliobacterium modesticaldum
           Ice1]
 gi|167591426|gb|ABZ83174.1| two component diguanylate cyclase [Heliobacterium modesticaldum
           Ice1]
          Length = 324

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 88/179 (49%), Gaps = 10/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            +  EL  +  ++  LS +D L+GL N   F   L             +S++ FDID+FK
Sbjct: 137 RVTAELEEAVRKLQNLSSLDGLTGLANRRRFDEYLASEWKRAIRNGTPISLILFDIDWFK 196

Query: 141 QINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GH  GD  +  ++  +  VV  +   V R GGEEFA     +S++ A  +A  +
Sbjct: 197 PYNDTYGHIQGDDCLKAIASLMPKVVRRSSDLVCRYGGEEFAVILPDTSQEGALAVAESI 256

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
           R+ +  + I     P   +T+S G+A           T+I  AD+ALY AK+ GRNR V
Sbjct: 257 REALSEAGIEHRQSPLDRVTVSVGVATAYPSPSSEPVTLIGYADEALYEAKRQGRNRTV 315


>gi|320085396|emb|CBY95177.1| Cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 570

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 11/203 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+ +  T  LL+ + +   ++K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 +  S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
            AD+ LY AK+SGRNR+ C SD 
Sbjct: 542 LADKRLYYAKQSGRNRI-CASDA 563


>gi|218461247|ref|ZP_03501338.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium etli Kim 5]
          Length = 264

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 11/205 (5%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           +L+E   + ++     ++        + EL +S  +I Q++  D L+ L N S F   L 
Sbjct: 3   VLLETRKVPVMDAGGGVVGVLGVARDVTELNVSRQKIHQMAFYDPLTSLPNRSLFNDRLR 62

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     ++  +   DID+FK +ND  GHPVGD+++   + +L         V RLG
Sbjct: 63  QMITSAVSRGQRAGVALIDIDHFKVVNDTMGHPVGDELLCQAAARLKASVRDYDTVARLG 122

Query: 177 GEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIS 234
           G+EFA       +  +   +A  + +  +     +  G  + I+ S GIA        ++
Sbjct: 123 GDEFAILLPEIRQGDDLGRIAGTILERFKEG--FLLDGKEVFISCSVGIALYPDDSADVN 180

Query: 235 TIIYRADQALYVAKKSGRNRVVCFS 259
            ++  AD A+Y+AK+SGRN    +S
Sbjct: 181 DLVKYADSAMYLAKRSGRNSFRFYS 205


>gi|167552781|ref|ZP_02346532.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205322608|gb|EDZ10447.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 570

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 11/203 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+ +  T  LL+ + +   ++K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 +  S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
            AD+ LY AK+SGRNR+ C SD 
Sbjct: 542 LADKRLYYAKQSGRNRI-CASDA 563


>gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [Herminiimonas arsenicoxydans]
 gi|133738375|emb|CAL61420.1| conserved hypothetical protein; putative GGDEF, MHYT and EAL
           domains; putative membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 715

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 101/224 (45%), Gaps = 13/224 (5%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLS 110
           G+ P +    +++  LS++ I++  S+L   +      + K L ++   +++ +  D L+
Sbjct: 214 GIPPGWLALVVIIVTLSVLAIALLTSVLDTRLESQTSLLAKSLAVANQELTRQALQDNLT 273

Query: 111 GLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            L N +     L          + + +++F D+D FK IND+ GH +GD ++  ++ ++ 
Sbjct: 274 KLPNRTLLEDRLNQILHKAERTHTRFALMFIDLDGFKAINDSLGHHIGDMLLIEVAQRIR 333

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                     RLGG+EF      +  ++AA +A+ L  II  +Q       ++ ++ S G
Sbjct: 334 GSIRAQDTAARLGGDEFVLLIEVTEPEDAASVADKLCNII--NQPFEIDFHTLGVSASVG 391

Query: 224 IAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           I            ++  AD A+Y  K +GRN    F    N   
Sbjct: 392 ITIYPDDGHTPHDLLVNADAAMYHTKSTGRNGYHFFEASMNANA 435


>gi|45655764|ref|YP_003573.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|45602735|gb|AAS72210.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 524

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 115/232 (49%), Gaps = 35/232 (15%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
           I+ V F+ ++ L    L PF+GL        +L I+SI       YI      +L  S  
Sbjct: 311 ISAVEFLFSVIL---NLLPFWGLIC------TLGIVSIL------YI------KLKASME 349

Query: 99  RISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++S++   D L+G+ N   F+        ++  + +  +I+  DID+FKQ+ND FGH  G
Sbjct: 350 QVSKMIHTDPLTGIANRRGFLKLTQKSLVTIHRHGQSWTILMIDIDHFKQVNDRFGHDTG 409

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  +S  L         V R GGEEFA    G + +++  +A  LRK +E S++ + 
Sbjct: 410 DRILIKVSQILSANIRQTDVVCRWGGEEFAVFLFGVTPEDSINIAEHLRKEVE-SKVVLK 468

Query: 212 SGPSIHITISAGIAE----RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            G    +T+S GI+E    +     +      ADQALY AK  GRNRV  F 
Sbjct: 469 DGK--PVTLSIGISEGKSGKSSGSGLENAFACADQALYQAKTLGRNRVCVFD 518


>gi|325284705|ref|YP_004264168.1| diguanylate cyclase/phosphodiesterase [Deinococcus proteolyticus
           MRP]
 gi|324316194|gb|ADY27308.1| diguanylate cyclase/phosphodiesterase [Deinococcus proteolyticus
           MRP]
          Length = 819

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 90/179 (50%), Gaps = 7/179 (3%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDN 145
           + K+L  + + ++  +  D L+GL N + F + +           ++F D+D FKQ+ND 
Sbjct: 371 VNKQLQTAQHTLAYRATHDALTGLANRAYFQAEVERELEAGHSFGLLFIDLDRFKQVNDT 430

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIE 204
            GH  GD+++  ++ QL  V      V R+GG+EF        +  +A ++A+ +   + 
Sbjct: 431 LGHDTGDQLLKAVARQLKQVLRPNDLVARMGGDEFTVILRNLHTSYDAEVMAHKVLNRLA 490

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             +    +  ++++T S G+A      E +ST+   AD A+Y AK+ G+N V  F  + 
Sbjct: 491 --EPFHVAENTLYVTASIGMAVAPQDGEDVSTLQRHADIAMYRAKREGKNSVRAFQPLM 547


>gi|288960570|ref|YP_003450910.1| GGDEF domain-containing protein [Azospirillum sp. B510]
 gi|288912878|dbj|BAI74366.1| GGDEF domain-containing protein [Azospirillum sp. B510]
          Length = 379

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 104/228 (45%), Gaps = 12/228 (5%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96
            F+  V  + ++ +F   L     L   L   L + + +    L+LG +     +    +
Sbjct: 141 FFLGPVAALHSLSIFV--LPWEVALPTFLNGGLPVALFTAGGILMLGTMLAR-ERRRVDT 197

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
              +   +  D L+GL N  AF +++         ++  +S++  DID+FK IND+ GH 
Sbjct: 198 ERMLRDAALSDPLTGLANRRAFFAAIDRAVAGGLRHDMPVSLLMLDIDHFKDINDSHGHD 257

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  L   L         V R GGEEFA    G+    A ILA  LR  + +  I+
Sbjct: 258 AGDAVLVALGRLLQGGVRQSDLVARFGGEEFAILLPGAPADGAFILAERLRGAVRDLSIH 317

Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            + G  + +T+S G++           +I  AD ALY AK+ GR+RV 
Sbjct: 318 -ADGAILGVTVSIGLSSLGPDLCRADLLIKTADMALYRAKQGGRDRVC 364


>gi|253689587|ref|YP_003018777.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251756165|gb|ACT14241.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 532

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 8/168 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHP 149
           L     ++S  +  D L+GLLN      S+      + +++ +  DID+FK++ND +GH 
Sbjct: 355 LHKRIGKLSLQAHTDPLTGLLNRRGIYESIELILPKSNQVAAIVIDIDHFKRVNDTYGHN 414

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD VI  L+  +         + R GGEEF A    +  ++A  +A  LRK +E   + 
Sbjct: 415 IGDDVIRLLAKSIKQGSRESDLICRTGGEEFLALLPDTDMKQAVDIAERLRKKVEKMPLP 474

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           I      +ITIS G+       E I  ++  AD ALY AK  GRNRVV
Sbjct: 475 IPE----NITISLGVTCFIPGAEQIDNVLKIADDALYQAKHEGRNRVV 518


>gi|167825369|ref|ZP_02456840.1| diguanylate cyclase [Burkholderia pseudomallei 9]
 gi|226198621|ref|ZP_03794187.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9]
 gi|225929364|gb|EEH25385.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9]
          Length = 454

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 102/233 (43%), Gaps = 20/233 (8%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS-----ILKE 92
           ++A  +F    F+        +G+   L+   S   +     L+            +L+E
Sbjct: 228 WLAHAVFAGGFFMLS------FGVVQALMTTRSFATVYRQQDLMARLAESMARTEGVLQE 281

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDN 145
           L  +  ++  L+  D L+G  N   FI  + S   +        S++  D+D FK INDN
Sbjct: 282 LKRTNQKLEHLATTDPLTGASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFKTINDN 341

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH VGD V+     Q +        + R+GGEEF           A+ +A  +R  I N
Sbjct: 342 YGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRTTIAN 401

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   I  G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV 
Sbjct: 402 ASFGI-DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 453


>gi|146338192|ref|YP_001203240.1| putative diguanylate cyclase [Bradyrhizobium sp. ORS278]
 gi|146190998|emb|CAL75003.1| Putative diguanylate cyclase (GGDEF) precursor [Bradyrhizobium sp.
           ORS278]
          Length = 502

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 92/197 (46%), Gaps = 15/197 (7%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SL 122
           ++++  I   L    ++   ++      +R+ +L+  D L+GL N   F           
Sbjct: 296 AMMLALIVFVLAATQVAAREIQLRTRVESRLERLATTDPLTGLKNRRKFDETIEIEWRRA 355

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFA 181
                 L ++  D D+FK  ND  GH  GD+V+  ++  +            R GGEEFA
Sbjct: 356 QRAQVPLGLLMIDADHFKSYNDTHGHQAGDQVLVGIAVCISDSVRRAGDCAARYGGEEFA 415

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYR 239
               G++E++A  +A  +R  +      + +G + + +IS G+A          S+++  
Sbjct: 416 VLLPGTAEKDALHVAETIRIKVA-----LWAGEAGNASISIGVASVTPTRDADWSSLLNA 470

Query: 240 ADQALYVAKKSGRNRVV 256
           AD+ALY+AK +GRNR +
Sbjct: 471 ADRALYMAKAAGRNRCI 487


>gi|89093730|ref|ZP_01166677.1| hypothetical protein MED92_11509 [Oceanospirillum sp. MED92]
 gi|89082126|gb|EAR61351.1| hypothetical protein MED92_11509 [Oceanospirillum sp. MED92]
          Length = 811

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 94/176 (53%), Gaps = 11/176 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S+L E   +   + +L+  D L+ L N   F+++L         Y+ +LS+   D+D+FK
Sbjct: 625 SLLIEEQQTEANLHRLATTDELTSLANRRKFLTTLEAELARAKRYHRELSLCMLDLDHFK 684

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND+ GH  GD V+  ++  +  +       GR+GGEEFA     +SE +A ILA  LR
Sbjct: 685 RINDDNGHSAGDSVLVEVAKIMEAMLRESDMAGRIGGEEFAILLPDTSEDDALILAERLR 744

Query: 201 KIIENSQINISSGPSIHITISAGIAER---CHKEPISTIIYRADQALYVAKKSGRN 253
           + IE+ +I   +  ++ +T S G+A           S ++  AD  +Y AK++GRN
Sbjct: 745 EAIESLEIKYQA-HTLKLTTSIGVASLNQMPEIVQASELLSAADDCMYYAKQNGRN 799


>gi|261251076|ref|ZP_05943650.1| hypothetical protein VIA_001095 [Vibrio orientalis CIP 102891]
 gi|260937949|gb|EEX93937.1| hypothetical protein VIA_001095 [Vibrio orientalis CIP 102891]
          Length = 457

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 87/174 (50%), Gaps = 5/174 (2%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
             ++   +  D L+ L N   F       + +  E L++V  DID+FK+INDN+GH VGD
Sbjct: 285 EQKLYLEATTDPLTKLSNRRHFFEIGEQLVQNEMEPLAVVIIDIDHFKKINDNYGHQVGD 344

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             ++  ++           +GR+GGEEFA   L         +   +RK +  S  N S 
Sbjct: 345 LALSRFAEMCCREIRASDIIGRIGGEEFAIILLNVDLAIVNEVTERIRKRVAESNFN-SE 403

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             S+ +TIS G+A       +  +I RAD ALY AK SGRNRVV    ++  +C
Sbjct: 404 VSSLSMTISLGVALSDQAHTLEHLIKRADGALYQAKVSGRNRVVISEQVKEESC 457


>gi|197122692|ref|YP_002134643.1| diguanylate cyclase [Anaeromyxobacter sp. K]
 gi|196172541|gb|ACG73514.1| diguanylate cyclase [Anaeromyxobacter sp. K]
          Length = 764

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 9/185 (4%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           LL+  +  +   +    +++  +L+  D L+GL NH  F   L         Y ++ S++
Sbjct: 568 LLVISMHAAQSIDRARLFDQTERLATTDGLTGLTNHRTFQERLDAHLGQAQRYGKRTSLL 627

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK +ND +GHPVGD+V+  ++  L         V R GGEEFA     +    A
Sbjct: 628 LCDIDHFKSVNDTYGHPVGDQVLRGVARTLARAARGTDVVARYGGEEFAIVMPETDTGGA 687

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSG 251
            ++A  +R+ +         GP + +T+S G+A           +I RAD  LY AK+ G
Sbjct: 688 MVIAERIREKVGQLVFETEQGP-LKVTLSLGVATFPDDGAQKPALIERADACLYHAKRHG 746

Query: 252 RNRVV 256
           RN+ V
Sbjct: 747 RNQSV 751


>gi|91977180|ref|YP_569839.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91683636|gb|ABE39938.1| diguanylate cyclase [Rhodopseudomonas palustris BisB5]
          Length = 411

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 63/203 (31%), Positives = 100/203 (49%), Gaps = 17/203 (8%)

Query: 63  YILVENLSLVIISI-TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF--- 118
           +I++  + LV+ +I T+ ++   +S   ++    +       + +D L+GL N   F   
Sbjct: 183 WIMIFAIELVLYAIGTVFVIFMLVSERTVRAHKTA-------ASLDPLTGLFNRRGFSEA 235

Query: 119 ----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
               I         ++++ FD+D+FK IND FGHP GD+VI   +  +          GR
Sbjct: 236 TGRMIEREAEAGRPVTVMIFDLDHFKSINDRFGHPAGDEVIKLFATIVSGSLRMSDLCGR 295

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
           +GGEEFAA     S +EA   A  +R+  E   + +  G  I  T+S G+A       + 
Sbjct: 296 IGGEEFAALLP-CSIEEAMTAAERVREAFEGCGLEV-DGAPIATTVSIGVAGGPANIELE 353

Query: 235 TIIYRADQALYVAKKSGRNRVVC 257
            ++  AD ALY AK+ GRNRVV 
Sbjct: 354 VLLAAADTALYQAKRGGRNRVVA 376


>gi|302878330|ref|YP_003846894.1| diguanylate cyclase [Gallionella capsiferriformans ES-2]
 gi|302581119|gb|ADL55130.1| diguanylate cyclase [Gallionella capsiferriformans ES-2]
          Length = 599

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 85/175 (48%), Gaps = 8/175 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQI 142
           + +L    + +S+L   D L+G LN     +        +   +E L I   DID FK++
Sbjct: 424 ISKLEKELSEVSELVHQDQLTGALNRRGLDAAFDRESRRVDRSHESLCIALLDIDNFKRL 483

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH VGDK +  L   +         V R GGEEF       +  EAA+    L++ 
Sbjct: 484 NDTMGHQVGDKALIHLCHVIKEALRPSDSVARYGGEEFVLILPDVTLAEAALTVERLQRE 543

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   Q  +     I +T SAG+A+    E    +I RAD+A+Y AK++G+NRVV 
Sbjct: 544 L-TKQFFMHENDRILVTFSAGVAQLAPNESQEELIGRADKAMYQAKQTGKNRVVV 597


>gi|170736921|ref|YP_001778181.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia cenocepacia
           MC0-3]
 gi|169819109|gb|ACA93691.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia cenocepacia
           MC0-3]
          Length = 313

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 11/204 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           L     +  + +TIS +       + +E   +  ++ + +  D L+G+ N   F + L  
Sbjct: 113 LTRGRDVEAVCVTISDVTH--VSVMQREREEAVAKLREHANRDGLTGIANRRFFEARLGD 170

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   LS++ FD+D+FK IND FGH  GD V+   + ++  +       GR GG
Sbjct: 171 EFARWQRYGGDLSVLLFDLDHFKTINDRFGHAAGDAVLRETARRVASIVRAQDTFGRFGG 230

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTI 236
           EEFA     ++  EA  +A+ +R+ I +  ++ + G S+ +T S G             +
Sbjct: 231 EEFALLLPCTNLDEAMRVADKVREAIGSMPVD-AEGVSVPVTASVGGTCAKPGALTCDVL 289

Query: 237 IYRADQALYVAKKSGRNRVVCFSD 260
           +  AD ALY AK+ GR+R + ++D
Sbjct: 290 VNEADAALYRAKRLGRDRSIAYAD 313


>gi|168239226|ref|ZP_02664284.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736370|ref|YP_002115021.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194711872|gb|ACF91093.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288064|gb|EDY27451.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 570

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 11/203 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+ +  T  LL+ + +   ++K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 +  S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
            AD+ LY AK+SGRNR+ C SD 
Sbjct: 542 LADKRLYYAKQSGRNRI-CASDA 563


>gi|167898437|ref|ZP_02485838.1| putative transmembrane transcriptional sensor regulator
           [Burkholderia pseudomallei 7894]
 gi|167906789|ref|ZP_02493994.1| putative transmembrane transcriptional sensor regulator
           [Burkholderia pseudomallei NCTC 13177]
 gi|167915143|ref|ZP_02502234.1| putative transmembrane transcriptional sensor regulator
           [Burkholderia pseudomallei 112]
 gi|167922980|ref|ZP_02510071.1| putative transmembrane transcriptional sensor regulator
           [Burkholderia pseudomallei BCC215]
 gi|254183668|ref|ZP_04890260.1| diguanylate cyclase [Burkholderia pseudomallei 1655]
 gi|184214201|gb|EDU11244.1| diguanylate cyclase [Burkholderia pseudomallei 1655]
          Length = 489

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 13/196 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------- 125
           + ++   ++  Y++ S+ ++   +   +++L+  D L+GL N  A   +L          
Sbjct: 290 VFALIFVVMSAYLAHSLWRK-STAEAALARLAGTDSLTGLYNRRALDETLEREWRRAVGG 348

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAA 184
           +  L+I+F DID+FK+ ND +GH VGD+V+A +S  +          V R GGEEF    
Sbjct: 349 DRPLAILFVDIDHFKRYNDTYGHQVGDEVLATVSRCIAQQAARLGDVVARYGGEEFVVVL 408

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRA 240
             +    A ++A  +R  +    I         +T+S G+A           I+ I+  A
Sbjct: 409 PDTPRGGALVVAERVRLGVRMLGIEHEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAA 468

Query: 241 DQALYVAKKSGRNRVV 256
           DQALY AK  GRNRVV
Sbjct: 469 DQALYQAKADGRNRVV 484


>gi|307822007|ref|ZP_07652239.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307736573|gb|EFO07418.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 845

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 17/194 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S + +L      I +L+  D L+ L N       L           +  +++F D+D+FK
Sbjct: 393 SDISQLKSDEEEIKRLAFYDPLTELPNRRLLNDRLAQELAITGRSGKNGALLFIDLDHFK 452

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ------EAAI 194
            IN+  GH  GD+V+  ++ +L +       V R+  +EF       +EQ      EA  
Sbjct: 453 NINETLGHSAGDRVLVEVAYRLKLRVRDCDTVARISSDEFVVILTELNEQIGLACNEARY 512

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGR 252
           +A  L++ I   Q+       ++I+ S GIA       I    ++ +A  A+Y AK+SGR
Sbjct: 513 IAEKLQQTI--CQVYSVMNHKLYISSSIGIAMFSENSDIPPDDLLKQAGTAMYRAKESGR 570

Query: 253 NRVVCFSDIENNTC 266
           N +  F D      
Sbjct: 571 NMLQFFQDSMQEAA 584


>gi|284050232|ref|ZP_06380442.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Arthrospira platensis str. Paraca]
          Length = 504

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 53/212 (25%), Positives = 97/212 (45%), Gaps = 11/212 (5%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           EYI +E L+ VI+     +     +   + +   +  ++   +  D L+GL N +  ++ 
Sbjct: 50  EYIWLETLTKVILDNQGEVRHLQSASRDVSDRIKAEEQLKYDALHDSLTGLPNRTHLMAQ 109

Query: 122 L--------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           L         + N +L+I+F D+D FK +ND+ GH +GDK+++ ++  +         + 
Sbjct: 110 LDMALKRAQNNENLQLAILFLDLDNFKVVNDSLGHLIGDKMLSLVAKIIKNFVRDTDLLA 169

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KE 231
            LGG+EF           EA  +A  + + +  S + I     + +  S GI  R +  E
Sbjct: 170 HLGGDEFVIVLEYLEVIHEAIRVAERILESLRTSPLQIGE-REVFVNSSIGIVARTNRHE 228

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
               ++  AD A+Y AK  GR R   F  + +
Sbjct: 229 KAEDLLRDADLAMYRAKHEGRGRYAIFDPLMH 260


>gi|239617314|ref|YP_002940636.1| diguanylate cyclase with PAS/PAC sensor [Kosmotoga olearia TBF
           19.5.1]
 gi|239506145|gb|ACR79632.1| diguanylate cyclase with PAS/PAC sensor [Kosmotoga olearia TBF
           19.5.1]
          Length = 303

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 8/172 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
           L      + +L+  D L+ L N       L         +  +  ++F DID+FK  ND 
Sbjct: 132 LKQRMTELEKLAMFDELTKLPNRRYVEERLEDFMNDFMRHKLRFGVIFMDIDHFKSFNDT 191

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GDKV+  +++ L+        VGR GGEEF A     + +    +A   R ++E+
Sbjct: 192 YGHVAGDKVLKIVANTLLGASRVSDVVGRWGGEEFVALIKNVNMKTIETIAERYRLLVES 251

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S   + +G S+ +TIS G       +   +II RAD+ +Y++K+ GRNR+  
Sbjct: 252 SSFEL-NGESLSVTISIGATLAKQGDTKESIIKRADELMYISKQRGRNRLTI 302


>gi|206901454|ref|YP_002251456.1| ggdef domain [Dictyoglomus thermophilum H-6-12]
 gi|206740557|gb|ACI19615.1| ggdef domain [Dictyoglomus thermophilum H-6-12]
          Length = 1073

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 56/184 (30%), Positives = 80/184 (43%), Gaps = 10/184 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVF 133
           +  YIS +I  E  + +    +L+ ID L+G+LN  A              YN  LS + 
Sbjct: 691 IANYISIAI--ENALLFEETKKLATIDPLTGILNRRALEEAFNKDVERAKRYNRPLSAMV 748

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK  ND +GH  GD+V+  L+  L         VGR GG+EF      ++ Q A 
Sbjct: 749 IDVDDFKLFNDTYGHLFGDQVLKELAKTLRNSCRKTDIVGRYGGDEFCIILPETNLQGAT 808

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGR 252
             A  L K I N  +       I I +S G+A           ++  AD  +Y AK SG 
Sbjct: 809 KFAERLLKNIRNLTVVTPDNNKIPIKVSIGVASYPDDTYEPEKLLTLADTTMYKAKTSGG 868

Query: 253 NRVV 256
           +   
Sbjct: 869 DSFA 872


>gi|332296033|ref|YP_004437956.1| diguanylate cyclase with PAS/PAC sensor [Thermodesulfobium
           narugense DSM 14796]
 gi|332179136|gb|AEE14825.1| diguanylate cyclase with PAS/PAC sensor [Thermodesulfobium
           narugense DSM 14796]
          Length = 560

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 78/168 (46%), Gaps = 11/168 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
              +  LS  D L+G  N   F+  L            K S++  DID FK IND FGH 
Sbjct: 393 EKELYLLSITDPLTGAYNRRYFLERLDEEIERSRRTGSKFSVIMLDIDNFKGINDKFGHN 452

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  LS+ +           R GGEEF      ++ + A ILA +LR  + N +I 
Sbjct: 453 AGDLVLKSLSETIKDRIRKIDIFARWGGEEFVILLPETTPERALILAEELRIRLNNLKIE 512

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              G     T+S GIA    ++ I ++I RAD  +Y AK  G+N V  
Sbjct: 513 GIKG----FTVSLGIAGFRKEDDIDSLIERADNLMYEAKAVGKNCVRY 556


>gi|115377475|ref|ZP_01464677.1| ggdef domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365519|gb|EAU64552.1| ggdef domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 312

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 59/181 (32%), Positives = 87/181 (48%), Gaps = 11/181 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L  L      + QLS +D L+ L NH  F   L         Y++ L ++  D+D+FK+I
Sbjct: 117 LSTLAAQVMELQQLSVLDGLTQLHNHRYFQERLREEFRCAQRYDDALCLILLDLDFFKEI 176

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GHPVGD V+  ++  L         V R GGEEFA     +    A  +A  + K 
Sbjct: 177 NDRHGHPVGDTVLCEVARILQQSVRETDIVARYGGEEFAVLLPRTHLAGAITVAERVWKG 236

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +      + +  ++ IT S G++   H+       ++  AD+ALY AK+ GRNRV   S 
Sbjct: 237 VAGQP--MGADGALRITASLGVSGFPHRTVLTPEQLLLTADEALYRAKREGRNRVCLHSP 294

Query: 261 I 261
           I
Sbjct: 295 I 295


>gi|238794774|ref|ZP_04638377.1| Sensory box-containing diguanylate cyclase [Yersinia intermedia
           ATCC 29909]
 gi|238725928|gb|EEQ17479.1| Sensory box-containing diguanylate cyclase [Yersinia intermedia
           ATCC 29909]
          Length = 855

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 59/188 (31%), Positives = 83/188 (44%), Gaps = 11/188 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           + S +     +  RI  LS  D L+GL N           +  L +    L I+  D+D 
Sbjct: 413 TASDITREIEAQERIQHLSLHDALTGLPNRLRMKEFLENKLRHLAAAQHPLVIINVDLDK 472

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK +ND FGH  GD V+  +S++L         V R GG+EF     G SS +E   L  
Sbjct: 473 FKPVNDTFGHVTGDLVLHQVSERLRSCLRDNDLVARQGGDEFILIITGLSSRKEIEQLCA 532

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            +   IE+    + +   I+I  S GIA           ++  AD A+Y AK SGRNR  
Sbjct: 533 RVIARIES--PYVINDQDIYIGASIGIALAPQDSMQAEELLRFADIAMYEAKNSGRNRWS 590

Query: 257 CFSDIENN 264
            +S   N 
Sbjct: 591 FYSSEMNE 598


>gi|289548454|ref|YP_003473442.1| diguanylate cyclase [Thermocrinis albus DSM 14484]
 gi|289182071|gb|ADC89315.1| diguanylate cyclase [Thermocrinis albus DSM 14484]
          Length = 401

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 99/202 (49%), Gaps = 23/202 (11%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
           ++N S  ++ +    +L  +SG ++K               D L+GL +       L   
Sbjct: 216 MDNYSKTLLHLIQEEMLAVLSGFVIK---------------DPLTGLYSRQYLEDYLNKE 260

Query: 126 NEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
             ++       S++F D+D FK +ND +GH VGD V+   +  L     +     R GG+
Sbjct: 261 MSRVKRHKLVISLLFIDLDDFKWVNDTYGHMVGDVVLKSFASLLKENLRSGDIPVRYGGD 320

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EF      +S + A ++A  +R+ +EN      +  SI +T+S G+     ++ +++ + 
Sbjct: 321 EFVVILPHTSAEGAMVVAERIRRAVENHVFEAHN-VSIKLTVSIGVTPLKEEDDVTSFLE 379

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
           RAD+A+Y AK+ G+NRVV  +D
Sbjct: 380 RADRAMYCAKREGKNRVVLLND 401


>gi|168244837|ref|ZP_02669769.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168462472|ref|ZP_02696403.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|194449982|ref|YP_002046038.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197247894|ref|YP_002146037.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|198245164|ref|YP_002215098.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200390082|ref|ZP_03216693.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|238912441|ref|ZP_04656278.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|194408286|gb|ACF68505.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|195634181|gb|EDX52533.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197211597|gb|ACH48994.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197939680|gb|ACH77013.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199602527|gb|EDZ01073.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205336370|gb|EDZ23134.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|326622846|gb|EGE29191.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 570

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 11/203 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+ +  T  LL+ + +   ++K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 +  S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
            AD+ LY AK+SGRNR+ C SD 
Sbjct: 542 LADKRLYYAKQSGRNRI-CASDA 563


>gi|205374991|ref|ZP_03227782.1| sensory box GGDEF domain-containing protein [Bacillus coahuilensis
           m4-4]
          Length = 741

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 84/187 (44%), Gaps = 8/187 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDY 138
            + G  + E   +   I  ++  D L+GL N + F   +         EKL+++F D+D 
Sbjct: 294 MVIGRDITERKKADETIQYMAYYDALTGLPNRNMFKEHVDKRLNENPEEKLAVLFLDLDR 353

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND  GH +GD+++  ++ +L  V      V R GG+EF      +S +     AN 
Sbjct: 354 FKVINDTKGHSIGDRLLQLVARRLTDVVKESGVVSRQGGDEFLLLLENTSTEAIEHTANQ 413

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L K     +          +T S GI+      E   T+I  AD A+Y+AK  G+N    
Sbjct: 414 LIKSFA--KPFTIMDEDFFVTTSIGISVYPMDGEEQETLIKHADTAMYLAKDQGKNNFQF 471

Query: 258 FSDIENN 264
           F+   N 
Sbjct: 472 FNPSLNK 478


>gi|167908432|ref|ZP_02495637.1| diguanylate cyclase [Burkholderia pseudomallei NCTC 13177]
          Length = 281

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 103/236 (43%), Gaps = 20/236 (8%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY-----ISGSI 89
            + ++A  +F    F+        +G+   L+   S   +     L+         +   
Sbjct: 52  HTWWLAHAVFAGGFFMLS------FGVVQALMTTRSFATVYSQQHLMARLDEAMARTDVA 105

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           LKEL  +  ++  L+  D L+G  N   FI  + S   +        S++  D+D FK I
Sbjct: 106 LKELQHTNQKLEYLASTDPLTGASNRRKFIEQMQSEIARAKCDGTAFSLLALDLDNFKTI 165

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           NDN+GH +GD V+     + V        + R+GGEEF           A+ +A  +R  
Sbjct: 166 NDNYGHQIGDVVLRNFVRRCVAAIRPCDHIARVGGEEFMVLLPRMFADAASEIAERVRAA 225

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I N+   I  G  I +T+S G+++     + +  II  AD+ LY AK  G NRVV 
Sbjct: 226 IANASFGI-GGKRIGVTVSIGVSQYGRDGDTLDDIINAADKLLYRAKNEGSNRVVI 280


>gi|212638999|ref|YP_002315519.1| GGDEF and EAL domain-containing protein [Anoxybacillus flavithermus
           WK1]
 gi|212560479|gb|ACJ33534.1| Multidomain signal transduction protein (GGDEF and EAL domains)
           [Anoxybacillus flavithermus WK1]
          Length = 765

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 66/258 (25%), Positives = 111/258 (43%), Gaps = 19/258 (7%)

Query: 23  SPHTFMIYFSIFFSIFIATVIFI-------ANIFLFYIGLTPFYGLEYILVENLSLVIIS 75
            P    I F     + +  V FI           +F +G   F     +L EN  L+   
Sbjct: 248 QPSVIKIMFPYVCFLLLLFVPFIYPDDRIVITCLVFAVGCI-FLRQWMMLKENRQLLQQL 306

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
            T++  L         EL     +++ ++  D L+GL N  AF+  L             
Sbjct: 307 QTLNDNLERKVAQRTSELVHLNEQLTYVANHDFLTGLFNRRAFVMKLEEELIRAKQQQHH 366

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            +++F D+D FKQIND FGH +GD++I  +   L        F+ R GG+EF      + 
Sbjct: 367 FAVIFIDVDRFKQINDYFGHQIGDELIVQIGRLLKETIRPTDFIARQGGDEFTIIF--TP 424

Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERC-HKEPISTIIYRADQALYV 246
            +    L   + +++  SQ  ++     I I++S G+A      E + T++  AD A+Y 
Sbjct: 425 FKHVDELRRFVHRLVSFSQQPVAVQHLDIRISLSVGVAVYPYDGETVETLMKHADIAMYR 484

Query: 247 AKKSGRNRVVCFSDIENN 264
           AK+ G+N+   F+   + 
Sbjct: 485 AKEQGKNQYQFFNGEMDR 502


>gi|186475160|ref|YP_001856630.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Burkholderia phymatum STM815]
 gi|184191619|gb|ACC69584.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phymatum STM815]
          Length = 1040

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 86/187 (45%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            +  L     ++   +  D L+ L N +     L         +++ +++VF D+D FK 
Sbjct: 589 DVTALIRYQEQLEYQANYDSLTRLPNRNLLRDRLQHALIVAQRHHKGVAVVFIDLDGFKN 648

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDLR 200
           +ND+ GH VGD++++ ++D+L         V R GG+EF      + ++++ I     +R
Sbjct: 649 VNDSLGHSVGDRLLSVVADRLARCARASDTVARHGGDEFVIVMTDTVDEQSLIAWMERVR 708

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I  S+     G  +++  S G +      +   T++ +AD A+Y AK  GRN    + 
Sbjct: 709 ASI--SEPVWLDGTELYVGCSMGASLFPQDGDDAETLMKKADLAMYRAKDMGRNTFQFYQ 766

Query: 260 DIENNTC 266
              N + 
Sbjct: 767 PEMNVSA 773


>gi|87118683|ref|ZP_01074582.1| diguanylate cyclase (GGDEF domain) [Marinomonas sp. MED121]
 gi|86166317|gb|EAQ67583.1| diguanylate cyclase (GGDEF domain) [Marinomonas sp. MED121]
          Length = 419

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 63/236 (26%), Positives = 116/236 (49%), Gaps = 15/236 (6%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG---SI 89
           ++  + IA   FI    L+Y        ++  +     ++++  +I+++  ++ G     
Sbjct: 158 VYVPMMIAG-EFIGAFELYYDISDRIAAMKAHMEWVDRMLLLLSSIAIITAFVIGIGYKK 216

Query: 90  LKELFISYN-RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           ++++   Y   + +++  D L+ + N  +F + L         +  +LSI+ FD+D+FK 
Sbjct: 217 VQQIREEYELELIEMATKDKLTNIYNRRSFEARLLQDLKQYDKFQTELSIILFDVDHFKF 276

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH  GD V+  L++       +   V R GGEEF      + +  + ++A  LR 
Sbjct: 277 VNDTYGHQAGDSVLTLLAEIAQQTVRSNDIVARYGGEEFIILLPNTGKNGSQVIAEKLRS 336

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
            IEN+  +  S   I ITIS G+A     +   +  +I  AD ALY AK +GRN+V
Sbjct: 337 AIENAAFDTQS-YKIQITISLGVACISDVQHPNLDNLIKSADDALYYAKHNGRNQV 391


>gi|320162556|ref|YP_004175781.1| putative signaling protein [Anaerolinea thermophila UNI-1]
 gi|319996410|dbj|BAJ65181.1| putative signaling protein [Anaerolinea thermophila UNI-1]
          Length = 609

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 9/178 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           S +I  +    ++ + +L+R+D L+G LN  +F       I     Y+  LS++  D+D+
Sbjct: 431 SAAIAIQNATLFSEVQRLARLDSLTGALNRRSFYDQGQHEIQRAQRYHSPLSLIMLDVDH 490

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND +GH  GD+ +  +    +       +VGR GGEEF      +S + A  +A  
Sbjct: 491 FKQVNDRYGHLAGDEALKAVVQTCLAQVRQADWVGRFGGEEFVILLPETSLEGALAMAQR 550

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255
           L   +E  +        + ITIS G+AER  +   +  ++  AD+ALY AK  GRNRV
Sbjct: 551 LCTAVETLRFPGRD-ERMCITISVGVAERTLEMTQVEQLLNAADEALYRAKAMGRNRV 607


>gi|261212328|ref|ZP_05926613.1| amino acid ABC transporter amino acid-binding protein [Vibrio sp.
           RC341]
 gi|260838259|gb|EEX64915.1| amino acid ABC transporter amino acid-binding protein [Vibrio sp.
           RC341]
          Length = 459

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 106/214 (49%), Gaps = 4/214 (1%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            I   ++ +   Y    I     S+VI ++  +L L        ++L  +  +++ L++ 
Sbjct: 243 RILSRWVHIETVYPRYLIPALAASIVIAALFYTLQLRRTVRLRTQQLENANQKLTHLAQT 302

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+G+ N   F S L    ++   L+++ FDID FK IND +GH +GD+ I  ++  + 
Sbjct: 303 DSLTGIHNRHFFFSQLRKTQQESGSLTLMVFDIDDFKAINDTYGHGIGDQAICLVAASVR 362

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
            +    M   R+GGEEFA      S  E+  LA  +R+ I   ++ +S+   + +T+S G
Sbjct: 363 EILPPEMQFARIGGEEFAILIRAKSAAESLQLAERIRQRIAEKKLVVSTTEFVSLTVSIG 422

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            A     E   T+ + AD  +Y  K  G+N+VV 
Sbjct: 423 CAFYPSPENPFTL-HTADSLMYEGKHKGKNQVVF 455


>gi|94499837|ref|ZP_01306373.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Oceanobacter sp. RED65]
 gi|94428038|gb|EAT13012.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Oceanobacter sp. RED65]
          Length = 800

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 11/186 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + +L ++  ++  L+  D L+GL N   F   L             ++++F D+D FK
Sbjct: 350 SDITDLKVAQLQMENLAFFDPLTGLSNRRLFKDRLHKSISESKRRGSFVALLFLDLDQFK 409

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           +IND+ GH  GD ++   + +L         V R+GG+EF        +      +A  +
Sbjct: 410 RINDSLGHDAGDVLLEETARRLENSVRESDTVSRIGGDEFTVLLNDVENTHGVRHIAEKI 469

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            K +    I + +   I+ T+S GI       + ++T++  AD A+Y AK  GRN    F
Sbjct: 470 LKKV-CRPIMVKNQEIIN-TVSIGITLAPTDGDDVNTLMRNADMAMYQAKAMGRNNYQFF 527

Query: 259 SDIENN 264
           S+  N 
Sbjct: 528 SEEMNK 533


>gi|270158318|ref|ZP_06186975.1| PAS/GGDEF domain-containing protein [Legionella longbeachae D-4968]
 gi|289163435|ref|YP_003453573.1| regulatory protein (GGDEF, PAS, PAC domains) [Legionella
           longbeachae NSW150]
 gi|269990343|gb|EEZ96597.1| PAS/GGDEF domain-containing protein [Legionella longbeachae D-4968]
 gi|288856608|emb|CBJ10415.1| putative regulatory protein (GGDEF, PAS, PAC domains) [Legionella
           longbeachae NSW150]
          Length = 680

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 56/168 (33%), Positives = 79/168 (47%), Gaps = 8/168 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S+LS  D L+ L N       L          N  L +   DID FK  ND + H  GD
Sbjct: 510 LSELSLHDPLTNLYNRRYLNEILSRELILIARENRTLCVAMLDIDNFKHFNDTYSHLAGD 569

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +++  +   L   F    F  R GGEEF    L ++   A     +LR+ I+N  +    
Sbjct: 570 ELLKAIGKLLKNSFRESDFCVRFGGEEFVVVLLNTTLNNALTKMEELREKIKNITLYFKG 629

Query: 213 GPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               H+TIS G+AE       I  II  AD ALY AK++G++RV+ F+
Sbjct: 630 NRLSHVTISIGVAEALKDGASIEEIIKAADHALYAAKQAGKDRVIAFT 677


>gi|325983415|ref|YP_004295817.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Nitrosomonas sp. AL212]
 gi|325532934|gb|ADZ27655.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Nitrosomonas sp. AL212]
          Length = 753

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 60/217 (27%), Positives = 99/217 (45%), Gaps = 14/217 (6%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           YG EY    N+S  ++S   S+    I+ S + +   S   I + +  D L+GL N + F
Sbjct: 282 YGREYPAWLNIS-SVLSKKGSICYYLINFSNITDKKKSDEIIWRQANYDSLTGLPNRNMF 340

Query: 119 ISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L             L+++F D+D FK++ND+FGH VGD ++   + +L         
Sbjct: 341 YDRLSHDIKNAARTGMLLAVLFIDLDRFKEVNDSFGHSVGDALLVEAAKRLNGCVRETDT 400

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKII--ENSQINISSGPSIHITISAGIAERCH 229
           V RLGG+EF     G ++Q     A  + ++I  E ++    +    ++T S G+     
Sbjct: 401 VARLGGDEFTIILNGINDQHC---AERIIQMILLELTKPFHLNAKLAYVTASIGVTFFPA 457

Query: 230 KE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                  ++  ADQA+Y AK +GRN    F+      
Sbjct: 458 DAGSAEILMKNADQAMYAAKNNGRNCCSYFTSNMRKA 494


>gi|197262416|ref|ZP_03162490.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197240671|gb|EDY23291.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 570

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 11/203 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+ +  T  LL+ + +   ++K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 +  S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
            AD+ LY AK+SGRNR+ C SD 
Sbjct: 542 LADKRLYYAKQSGRNRI-CASDA 563


>gi|149184376|ref|ZP_01862694.1| GGDEF domain protein [Erythrobacter sp. SD-21]
 gi|148831696|gb|EDL50129.1| GGDEF domain protein [Erythrobacter sp. SD-21]
          Length = 243

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 105/232 (45%), Gaps = 7/232 (3%)

Query: 33  IFFSIFIATVIFIANIF--LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
           I  +  IA ++   ++F  L  +   P  G   +L  +L+ V I +  ++ +  +  S  
Sbjct: 2   IRSTAIIAGILTAGSLFCTLIVMAFRPSDGEHVVLALSLA-VAIPLVCAVPVALVVASQA 60

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFG 147
           + L     +++  +  D L+ L N   F   +G   E     +++  D+D FKQ+ND+ G
Sbjct: 61  EVLARLNRQLAYEASHDALTDLPNRREFFDEIGRRLESGGGGTVLLADVDRFKQVNDHHG 120

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+ +  L+        +   V RLGGEEF      +S      +A  LRK +E   
Sbjct: 121 HHTGDEALRALARLFAREIASDGLVARLGGEEFGVLIPDTSLARGHEVAERLRKTVEAQD 180

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +   G    +TIS GI     +E    +   AD ALY AK  GRNRV  ++
Sbjct: 181 FHSPEGNRFPLTISIGIDCLRERESAYPL-RGADSALYAAKSEGRNRVSFYT 231


>gi|262041036|ref|ZP_06014255.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041594|gb|EEW42646.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 379

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 66/276 (23%), Positives = 121/276 (43%), Gaps = 33/276 (11%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIF---IANIFLFYIGLTPF------ 58
            L++ LC      S S + F+ ++++ F+  +  ++    +  ++  + G+T F      
Sbjct: 107 LLALSLC-----WSLSNYCFIFFWTLPFAWPLLVILMTTGLTALYHHWPGITAFMLPLWV 161

Query: 59  ----YGLEYILVENLSLVIISITISLLLGYISGSILK----------ELFISYNRISQLS 104
                G++      +  +I+    + +L Y    + +          E      R+  ++
Sbjct: 162 TALLAGIQLHYHTEIRFLILWAIFTAILLYGRRILQRWYDEAWDTHQENMQLIQRLESIA 221

Query: 105 RIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
             D L+G  N  A  + L         L+++  D+DYFK+ ND +GH  GD+ ++ ++  
Sbjct: 222 NQDALTGTANRRALNAYLAAIWQQKTPLALMMIDVDYFKRYNDRYGHQAGDECLSSVAQV 281

Query: 162 LVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-IT 219
           L +        V R GGEEF     G S   A  +A  +++ I  + +  ++      +T
Sbjct: 282 LKMAVRAEGDLVARYGGEEFVVVLPGVSLAHATAIAERIQQKIREAGLPHAASAVASEVT 341

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S GI       PI T+I RAD ALY AK  GRN+ 
Sbjct: 342 VSIGIVASDGTVPIETLIARADSALYQAKNKGRNQW 377


>gi|254298091|ref|ZP_04965544.1| diguanylate cyclase [Burkholderia pseudomallei 406e]
 gi|157807902|gb|EDO85072.1| diguanylate cyclase [Burkholderia pseudomallei 406e]
          Length = 454

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 102/233 (43%), Gaps = 20/233 (8%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS-----ILKE 92
           ++A  +F    F+        +G+   L+   S   +     L+            +L+E
Sbjct: 228 WLAHAVFAGGFFMLS------FGVVQALMTTRSFATVYRQQDLMARLAESMARTEGVLQE 281

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDN 145
           L  +  ++  L+  D L+G  N   FI  + S   +        S++  D+D FK INDN
Sbjct: 282 LKRTNQKLEHLATTDPLTGASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFKTINDN 341

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH VGD V+     Q +        + R+GGEEF           A+ +A  +R  I N
Sbjct: 342 YGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRTTIAN 401

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   I  G    +T+S G+++     + +  I+  AD+ LY AK  GRNRVV 
Sbjct: 402 ASFGI-DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 453


>gi|312963435|ref|ZP_07777917.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens
           WH6]
 gi|311282241|gb|EFQ60840.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens
           WH6]
          Length = 1247

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 109/235 (46%), Gaps = 21/235 (8%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS-------LLLGYIS-GSILKELF 94
            F A ++        + G      +N +L    +TIS       L+  +++  + +  L 
Sbjct: 738 AFYAAMWHQLTAQGHWQGEISNRRKNGALYPSWLTISAVRNPDQLITHFVAVFADISSLK 797

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147
           ++  R+   +  D L+GL N + F + L +         ++ +++F D+D FK IND+ G
Sbjct: 798 LAQARLDYQAHHDPLTGLPNRTLFENRLQAALNGHQETGKQGAVLFLDLDRFKHINDSLG 857

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206
           HPVGD ++  ++ +L         V RLGG+EF     G     +AA LAN L   +   
Sbjct: 858 HPVGDLLLKDIAVRLKEQLRDIDTVARLGGDEFIILLPGLQHANDAAYLANKL---LACF 914

Query: 207 QINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +   +G     I+ S G +        ++T++  AD A+Y +K  GRNRV  ++
Sbjct: 915 TLPFQAGEHEFFISASIGTSLYPQDGTDVATLVKNADAAMYRSKAKGRNRVEHYT 969


>gi|294341557|emb|CAZ89974.1| hypothetical protein; putative PAS and GGDEF domains [Thiomonas sp.
           3As]
          Length = 420

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 4/173 (2%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHS---AFISSLGSYNEKLSIVFFDIDYFKQIND 144
             + E      R+  L+  D L+G+ N S     +  L      LS++  D+DYFK+IND
Sbjct: 240 RDISERKALERRLKHLATFDSLTGIHNRSSILGILERLLQRRPPLSVLLLDLDYFKRIND 299

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD+V+      +     +  F GRLGGEEF     G+ E EA  +A  LR  + 
Sbjct: 300 GFGHAAGDRVLCRFVQIIEGEKRSRDFFGRLGGEEFLLILDGADEAEAGQIAERLRAAVS 359

Query: 205 NSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
              I ++ G ++ +TIS G+ +    +   + ++ RAD+ALY AK+ GRN V 
Sbjct: 360 AEAIALAEGEAVALTISFGMTQSRSGDTRTADVLVRADRALYRAKQMGRNCVC 412


>gi|303242469|ref|ZP_07328950.1| diguanylate cyclase [Acetivibrio cellulolyticus CD2]
 gi|302589993|gb|EFL59760.1| diguanylate cyclase [Acetivibrio cellulolyticus CD2]
          Length = 428

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 9/175 (5%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNF 146
             +  +++  +  D L+ L N +   + L +        NE LS++  DID+FK +ND  
Sbjct: 243 KRAMQQLNMKAYTDKLTKLYNRNFLETYLENQIEATNLSNENLSVIMMDIDHFKNVNDKH 302

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD V+   +  ++        V R GGEEF A    +  + A  +A  +R+ I   
Sbjct: 303 GHTVGDAVLVVFAQVILRCIRKTDLVARYGGEEFIAILPATDTKTAVGIAERIRETIATE 362

Query: 207 QINISSGPSI-HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +   +   +  IT S G+A    H    + II  AD ALY AK+ GRNRV  ++
Sbjct: 363 SMPKLNDTVVPGITCSLGVATYPIHANTKNNIIKVADIALYKAKQGGRNRVEIYN 417


>gi|260365590|ref|ZP_05778117.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
 gi|308112925|gb|EFO50465.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
          Length = 280

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 91/175 (52%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L  +   +S++SR D L+GL N + +  SL          +   S+V FDID+FK++ND 
Sbjct: 105 LRETNQHLSEISRKDGLTGLFNRAFWEQSLKDEFAHLKVIDGPCSLVIFDIDHFKKVNDT 164

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GHP GD+VI   S  L     +    GR GGEEF      +++++A   A  LRK IE 
Sbjct: 165 YGHPTGDEVIRRTSALLRKTARSSDICGRFGGEEFTVLLPHTNQEQACYFAERLRKRIEQ 224

Query: 206 SQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             + +     I+ TIS G+ E   + E  +  +  AD ALY AK++GRN+     
Sbjct: 225 EIVKVED-FLINYTISIGVCEYKPYFESHTQWLKSADAALYRAKENGRNQTCLHE 278


>gi|119944046|ref|YP_941726.1| diguanylate cyclase [Psychromonas ingrahamii 37]
 gi|119862650|gb|ABM02127.1| diguanylate cyclase [Psychromonas ingrahamii 37]
          Length = 611

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 64/183 (34%), Positives = 95/183 (51%), Gaps = 9/183 (4%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVF 133
           LL  +     +EL  + +R   L+R D L+ +LN  AF             Y   L+I+ 
Sbjct: 426 LLEQLVTERTEELEQAKDRAELLARTDPLTNMLNRRAFFECGSVEIKRSLRYKSSLAIMM 485

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D+FK INDN+GH  GD  +  +++ L  +      +GR+GGEEFA     +  + A 
Sbjct: 486 IDLDHFKSINDNYGHAAGDNALLSVANTLKAMIRNVDIIGRIGGEEFAVIIPHADLEIAT 545

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
            LA  LR  IE  +I I + P + IT   G+       E +   + RAD+ALY+AK++GR
Sbjct: 546 ELAQRLRLGIEKVEIIIDNQP-VKITACFGVTSIDIKSESLDEALKRADKALYLAKENGR 604

Query: 253 NRV 255
           NRV
Sbjct: 605 NRV 607


>gi|77458016|ref|YP_347521.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas fluorescens
           Pf0-1]
 gi|77382019|gb|ABA73532.1| putative GGDEF domain regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 794

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 88/183 (48%), Gaps = 13/183 (7%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           L  GYIS   + +L      +  LS  D L+G+ N   F   L            +LS++
Sbjct: 613 LWHGYIS--DISDLKRVEEELRALSVTDSLTGIHNRRYFQERLTTEMARVERGGGELSVI 670

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK+IND +GH VGD+V+  + +++           RLGGEEF           A
Sbjct: 671 MLDIDHFKRINDQYGHAVGDRVLQAVCERIGHRLRRTDVFCRLGGEEFMVLCPDIDGDHA 730

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            +LA +L   + ++ I++       +T S GIA     E    ++ RAD  +Y AK+ GR
Sbjct: 731 HMLAEELWHSLRSAPIDVVG----VVTASFGIASWRPGEGADALLLRADSGVYAAKQGGR 786

Query: 253 NRV 255
           +RV
Sbjct: 787 DRV 789


>gi|317406315|gb|EFV86552.1| signaling/response regulator protein [Achromobacter xylosoxidans
           C54]
          Length = 351

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 85/177 (48%), Gaps = 11/177 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           ++L  S   + +L+  D L+GL N   F                ++S++  D+D+FK  N
Sbjct: 157 QQLLESNMELRRLTNSDGLTGLGNRRYFDEYLNAEWLRARRDGREISMLMIDVDHFKSYN 216

Query: 144 DNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+ +  +++ +      +     R GGEEFA    G+    A + A  LR+ 
Sbjct: 217 DTYGHIAGDEALKRVANTIFASCDRSTDLAARFGGEEFALVLPGTPAGSARLAAEKLRRA 276

Query: 203 IENSQINISS-GPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVV 256
           +E  QI     G    +T+S G A       +P + +I  AD+ LY AK+ GRNRVV
Sbjct: 277 VEAMQIPQKDNGGGPWLTVSIGTATAVPVVDQPCTDLIQIADRGLYQAKRQGRNRVV 333


>gi|311105868|ref|YP_003978721.1| sensory box protein 4 [Achromobacter xylosoxidans A8]
 gi|310760557|gb|ADP16006.1| sensory box protein 4 [Achromobacter xylosoxidans A8]
          Length = 570

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 89/177 (50%), Gaps = 9/177 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYF 139
           + + +   +   + +L+  D L+ L N   F+S + +   ++        +++  D+D+F
Sbjct: 385 TDITDRKRADFELRELAATDALTTLPNRRHFMSRIAAELARIKRQGSDCAAVLMCDLDHF 444

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND +GH +GD V+   ++ L         VGR+GGEEFA     +  + A   A  +
Sbjct: 445 KRINDTWGHAIGDGVLQHFANTLRAQLRAVDLVGRIGGEEFAVVLPDTDIERAHAFATRV 504

Query: 200 RKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++ I  +  ++     I +T+S GI+            + R+D+ALY AK+ GRNR+
Sbjct: 505 QQRIAAAPFSLGDDRHIPLTVSIGISTMHTLDADAELALSRSDRALYYAKQRGRNRI 561


>gi|300693374|ref|YP_003749347.1| signal transduction ggdef domain transmembrane protein [Ralstonia
           solanacearum PSI07]
 gi|299075411|emb|CBJ34706.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum PSI07]
          Length = 489

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 98/235 (41%), Gaps = 22/235 (9%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           + +F+A      +I+  +     + G+         LV++   ++L + Y+    L    
Sbjct: 263 YPLFVAVGTATEDIYANWKARAWWIGV---------LVVLFNMVTLAMAYLFAQHLDRRI 313

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
               R ++L+  D L+GL N  A    L           + LS++  D+D+FK  ND++G
Sbjct: 314 EEQRRHAELAATDALTGLANRRALDERLDAEWRRAARERQPLSVLMIDVDHFKAYNDHYG 373

Query: 148 HPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           HP GD  I  ++  +            R GGEEF     GS    A ++A  +R  I   
Sbjct: 374 HPDGDVAIQAVARCIQANLRRPGDLAARYGGEEFCVVLPGSDLGSANVIAETIRHAILAL 433

Query: 207 QINISSGPSIHITISAGIAERCHKEP-----ISTIIYRADQALYVAKKSGRNRVV 256
            I  +   S  +T+S G A             +T+   AD  LY AK  GRNR V
Sbjct: 434 NIPHTQSASAVLTVSIGAASGTPTSSGEQQRAATLTKAADAQLYRAKTLGRNRTV 488


>gi|294653542|ref|NP_714784.2| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
 gi|293630746|gb|AAN51799.2| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
          Length = 507

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 115/232 (49%), Gaps = 35/232 (15%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
           I+ V F+ ++ L    L PF+GL        +L I+SI       YI      +L  S  
Sbjct: 294 ISAVEFLFSVIL---NLLPFWGLIC------TLGIVSIL------YI------KLKASME 332

Query: 99  RISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++S++   D L+G+ N   F+        ++  + +  +I+  DID+FKQ+ND FGH  G
Sbjct: 333 QVSKMIHTDPLTGIANRRGFLKLTQKSLVTIHRHGQSWTILMIDIDHFKQVNDRFGHDTG 392

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+++  +S  L         V R GGEEFA    G + +++  +A  LRK +E S++ + 
Sbjct: 393 DRILIKVSQILSANIRQTDVVCRWGGEEFAVFLFGVTPEDSINIAEHLRKEVE-SKVVLK 451

Query: 212 SGPSIHITISAGIAE----RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            G    +T+S GI+E    +     +      ADQALY AK  GRNRV  F 
Sbjct: 452 DGK--PVTLSIGISEGKSGKSSGSGLENAFACADQALYQAKTLGRNRVCVFD 501


>gi|120556297|ref|YP_960648.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Marinobacter aquaeolei VT8]
 gi|120326146|gb|ABM20461.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter aquaeolei VT8]
          Length = 867

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 104/221 (47%), Gaps = 22/221 (9%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISG--------SILKELFISYNRISQLSRIDCL 109
           ++G  +   +N S     +TIS +              S +  L  +  ++ +++  D L
Sbjct: 265 WHGELWCRRKNGSQFAALLTISAVPDMRGNIEHYAAMFSDITALKENQQQLERVAHYDLL 324

Query: 110 SGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GL N       L             L++VF D+D FK++ND  GH VGDK+++ LS ++
Sbjct: 325 TGLPNRLLLGDRLKQAIRQTRRRGMHLAVVFIDLDGFKKVNDQHGHAVGDKLLSVLSRRM 384

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSI-HITI 220
             V      + RLGG+EF A  +   +   ++ +   L   IE +   +  G ++  ++ 
Sbjct: 385 TQVLREDDTLARLGGDEFVAILVDLPDSSVSVPILERL---IEVASQPVPIGDALCEVSA 441

Query: 221 SAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCFS 259
           S G++     E I    ++ +ADQA+Y AK++G+NR   F 
Sbjct: 442 SIGVSYYPQGEDIDADQLLRQADQAMYRAKQAGKNRYHVFD 482


>gi|254470292|ref|ZP_05083696.1| sensory box/ggdef family protein [Pseudovibrio sp. JE062]
 gi|211960603|gb|EEA95799.1| sensory box/ggdef family protein [Pseudovibrio sp. JE062]
          Length = 1031

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 56/188 (29%), Positives = 90/188 (47%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYF 139
             +++      RI  L++ D L+GL N + F        E          +++  D+D F
Sbjct: 551 RDMRKQKEDEARILHLAQHDMLTGLPNRTYFRERFQQAIENQACAEETISAVMVLDLDRF 610

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K IND +GHPVGDK+I  ++ +L         V RLGG+EFA   +   +  E  +L N 
Sbjct: 611 KDINDLYGHPVGDKLIQTVARRLNACVTHHDTVARLGGDEFAIIQVNLKTTAEVGLLTNK 670

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +++    I++ +  +I  + S GIA    H      ++ +AD ALY AK++GRN    
Sbjct: 671 IIEVLSK-PIHVGNNITIRTSASIGIALIPEHGTDPDELMSKADIALYEAKEAGRNTFAF 729

Query: 258 FSDIENNT 265
           F D     
Sbjct: 730 FEDKMEEA 737


>gi|330965674|gb|EGH65934.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 677

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 84/184 (45%), Gaps = 11/184 (5%)

Query: 82  LGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           L     S+ +E      +     Q + ID L+GL N +A+   L             L +
Sbjct: 492 LASRVASMEQEALGFRTNLEEQRQKALIDPLTGLPNRAAWGERLEQEMADWQREKNSLLV 551

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK+IND +GH  GDKV+  ++           F+ R GGEEF      +    
Sbjct: 552 CILDLDHFKRINDGYGHLAGDKVLKIVAHVFKKRLRPADFLARFGGEEFVMLLPATPSGT 611

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              L ++LR  +E    +   G  + IT+S G+      E   T I RADQALY AK +G
Sbjct: 612 GLTLLDELRTAVELCPFHFK-GERVTITVSIGVTALRTGERSDTAIKRADQALYKAKANG 670

Query: 252 RNRV 255
           RNRV
Sbjct: 671 RNRV 674


>gi|308273736|emb|CBX30338.1| hypothetical protein N47_D31470 [uncultured Desulfobacterium sp.]
          Length = 397

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 89/176 (50%), Gaps = 8/176 (4%)

Query: 90  LKE-LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           +KE L IS  +  QLS ID L+GL N       L         YN  LS++  DID FK 
Sbjct: 214 IKEALRISKEQYKQLSIIDDLTGLFNKRRLNEQLKWETSRALRYNRPLSLLLMDIDNFKS 273

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH  GD+V+A L+  +           R GGEEF      +S   +  +A  +R+
Sbjct: 274 VNDIYGHSQGDRVLAGLARMVKNCIRDSDIAFRYGGEEFIIILPETSIDNSLKVAGRIRQ 333

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + +    ++    I IT+S G  +    E  +  I RADQ +Y AKK+G++RV+C
Sbjct: 334 SLASLIFPVNLSDKITITLSIGATQYAPGEDQNDFIARADQYMYYAKKNGKDRVIC 389


>gi|264678470|ref|YP_003278377.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262208983|gb|ACY33081.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 184

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 61/174 (35%), Positives = 87/174 (50%), Gaps = 8/174 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHP 149
           L  +  ++    + D L+ L N  +  ++L          S+V  DID+FK++ND FGH 
Sbjct: 8   LNRNIQKLQDDVKTDPLTKLGNRRSLEAALQKLEASSHIFSVVSIDIDHFKKVNDTFGHD 67

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  L+ Q+  V        R+GGEEF      +SE  A  +A  LRK +E +   
Sbjct: 68  AGDIVLRDLAKQMKSVSRADDLPCRVGGEEFLIVLPRTSETTAVQVAERLRKQVEAAVFE 127

Query: 210 ISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
                  HITIS G+A   +    I T+I  AD+ LY AK+ GRNRV  +S  E
Sbjct: 128 GVG----HITISLGVASWPNSSSDIPTVIKYADEMLYKAKREGRNRVAVYSQSE 177


>gi|167840639|ref|ZP_02467323.1| two component system fusin protein [Burkholderia thailandensis
           MSMB43]
          Length = 487

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 13/204 (6%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYN---RISQLSRIDCLSGLLNHSAFISSL 122
           +    LV + +   +++   +  + +EL    +   R+ +L+R D L+GL N  AF  +L
Sbjct: 279 IRAQRLVALMLVFGIVIVSGTALLSRELRWRRHAELRLQRLARTDALTGLGNRRAFDENL 338

Query: 123 GSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGR 174
                        LS++F DID FK  ND +GH  GD V+  +   L   V      V R
Sbjct: 339 RREWARALRTGRPLSLLFVDIDQFKDYNDGYGHQAGDGVLREVGRCLALNVRRAVDDVSR 398

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEP 232
            GGEEF      +  + A  +A  +R+ + +  I  +  P   +T+S G+          
Sbjct: 399 YGGEEFVITLPDTDAKSATAIAEHIRRAVYDLDIQHAKSPYARVTVSIGLVTSHEHVAHS 458

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
            +T++  AD ALY AK +GRNRV 
Sbjct: 459 DTTLVKMADAALYQAKSTGRNRVC 482


>gi|168467926|ref|ZP_02701763.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|198241964|ref|YP_002215227.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|195628978|gb|EDX48374.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197936480|gb|ACH73813.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
          Length = 353

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 128/266 (48%), Gaps = 28/266 (10%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY------GLEYILVE----- 67
           + S+  + F++++ + F+  ++ ++ +  +   Y  L           L  +L       
Sbjct: 87  MWSYCSYFFIVWWQLPFAWPLSVILMLTALAALYYHLPALLFFIVPLWLTALLASVQLNQ 146

Query: 68  --NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDCLSGLLNH 115
             N+  +++ +T++ +L Y   I      E ++ Y        R+  ++  D L+G  N 
Sbjct: 147 YVNIRFLLVWLTLTTILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANR 206

Query: 116 SAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MF 171
            +  S LG      E  +++  D+DYFK  ND++GH  GD  +A ++  +     TP   
Sbjct: 207 RSMESFLGDALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVAGVMKRSVRTPADL 266

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKII-ENSQINISSGPSIHITISAGIAERCHK 230
           V R GGEEF      SS  EAA++A  ++  + E +  + +S  S  +T+S GI      
Sbjct: 267 VARYGGEEFVVVLPSSSLNEAALVAERIQTNLRETAMPHAASAVSETVTVSMGITLSTAG 326

Query: 231 EPISTIIYRADQALYVAKKSGRNRVV 256
           + ++ II RAD+ALY AK+ GRNR V
Sbjct: 327 DTVTGIIARADEALYRAKQQGRNRWV 352


>gi|307719595|ref|YP_003875127.1| hypothetical protein STHERM_c19190 [Spirochaeta thermophila DSM
           6192]
 gi|306533320|gb|ADN02854.1| hypothetical protein STHERM_c19190 [Spirochaeta thermophila DSM
           6192]
          Length = 1046

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 10/184 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           + +      R+  L+  D L+ L N       L           +K+ ++F D+D FKQ+
Sbjct: 601 ISKQKELEERLRYLAYHDALTDLPNRFLLEDRLDRECARARREGKKVGLIFVDLDNFKQV 660

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRK 201
           ND FGH  GD  +  ++  L         V R+ G+EF     G S++  A  +   + +
Sbjct: 661 NDTFGHRTGDLYLVHVARLLREACREVDTVARIAGDEFVIMLPGLSQKAFALSVLERIFR 720

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++        +  ++ +++SAG+A        +S I+ RAD ALY AK+ G+N+   F  
Sbjct: 721 VLREQPFQHGN-TTLEVSLSAGLAFFPDDGGSVSEILSRADIALYRAKRQGKNQYAVFQR 779

Query: 261 IENN 264
            +  
Sbjct: 780 EDQK 783


>gi|168234159|ref|ZP_02659217.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194472041|ref|ZP_03078025.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205352320|ref|YP_002226121.1| hypothetical protein SG1069 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207856501|ref|YP_002243152.1| hypothetical protein SEN1023 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|194458405|gb|EDX47244.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205272101|emb|CAR36954.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205331864|gb|EDZ18628.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|206708304|emb|CAR32607.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326627369|gb|EGE33712.1| ggdef domain-containing protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 570

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 11/203 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+ +  T  LL+ + +   ++K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 +  S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
            AD+ LY AK+SGRNR+ C SD 
Sbjct: 542 LADKRLYYAKQSGRNRI-CASDA 563


>gi|53722321|ref|YP_111306.1| regulatory protein [Burkholderia pseudomallei K96243]
 gi|124381509|ref|YP_001024075.1| GGDEF domain-containing protein [Burkholderia mallei NCTC 10229]
 gi|167003134|ref|ZP_02268924.1| putative diguanylate cyclase [Burkholderia mallei PRL-20]
 gi|167723858|ref|ZP_02407094.1| GGDEF domain protein [Burkholderia pseudomallei DM98]
 gi|167742825|ref|ZP_02415599.1| GGDEF domain protein [Burkholderia pseudomallei 14]
 gi|167820003|ref|ZP_02451683.1| GGDEF domain protein [Burkholderia pseudomallei 91]
 gi|167849835|ref|ZP_02475343.1| GGDEF domain protein [Burkholderia pseudomallei B7210]
 gi|254193579|ref|ZP_04900013.1| diguanylate cyclase [Burkholderia pseudomallei S13]
 gi|254356715|ref|ZP_04972990.1| putative diguanylate cyclase [Burkholderia mallei 2002721280]
 gi|52212735|emb|CAH38767.1| putative regulatory protein [Burkholderia pseudomallei K96243]
 gi|124289529|gb|ABM98798.1| diguanylate cyclase (GGDEF) domain protein [Burkholderia mallei
           NCTC 10229]
 gi|148025742|gb|EDK83865.1| putative diguanylate cyclase [Burkholderia mallei 2002721280]
 gi|169650332|gb|EDS83025.1| diguanylate cyclase [Burkholderia pseudomallei S13]
 gi|243061284|gb|EES43470.1| putative diguanylate cyclase [Burkholderia mallei PRL-20]
          Length = 489

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 13/196 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------- 125
           + ++   ++  Y++ S+ ++   +   +++L+  D L+GL N  A   +L          
Sbjct: 290 VFALIFVVMSAYLAHSLWRK-STAEAALARLAGTDSLTGLYNRRALDETLEREWRRAVGG 348

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAA 184
           +  L+I+F DID+FK+ ND +GH VGD+V+A +S  +          V R GGEEF    
Sbjct: 349 DRPLAILFVDIDHFKRYNDTYGHQVGDEVLATVSRCIAQQAARLGDVVARYGGEEFVVVL 408

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRA 240
             +    A ++A  +R  +    I         +T+S G+A           I+ I+  A
Sbjct: 409 PDTPRGGALVVAERVRLGVRMLGIEHEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAA 468

Query: 241 DQALYVAKKSGRNRVV 256
           DQALY AK  GRNRVV
Sbjct: 469 DQALYRAKADGRNRVV 484


>gi|330971107|gb|EGH71173.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 358

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 111/220 (50%), Gaps = 10/220 (4%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
              + +    L P   L   + +  + + + +T  + +G++S  +  +L+   N + ++S
Sbjct: 125 ALGVLISLAALDPVVNLHGNMAQIYACLPVLVTYPIFIGWLSHQVTLKLWEHRNILRKVS 184

Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           R D L+GLLNH A+   L        +  ++  I   DID+FK IND +GH +GD V+  
Sbjct: 185 RTDSLTGLLNHGAWKDLLDLEYASSQNAYQECVIALIDIDHFKVINDTYGHLMGDTVLQS 244

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +S+ L+        +GR GG+EF      +S  +A  +   LR  I+     +     + 
Sbjct: 245 ISEALIENLRDSDLIGRCGGDEFCVILPDTSLLQAKEILERLRLAIDEMTYTLH--CDLK 302

Query: 218 ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
           +++S GIA    +    S+ ++ AD+ALY+AK +GRNRV 
Sbjct: 303 VSLSIGIAAYSPEMPDASSWLHEADKALYLAKSTGRNRVA 342


>gi|262193644|ref|YP_003264853.1| diguanylate cyclase [Haliangium ochraceum DSM 14365]
 gi|262076991|gb|ACY12960.1| diguanylate cyclase [Haliangium ochraceum DSM 14365]
          Length = 732

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 60/191 (31%), Positives = 96/191 (50%), Gaps = 11/191 (5%)

Query: 78  ISLLLGYISGSILKELF--ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEK 128
           +  +LG I+  +   L   + Y  +  ++  D L+GL NH  F   L           + 
Sbjct: 530 VREMLGIIANQVAVSLQNGMMYKTMETMATTDGLTGLTNHRTFQDRLVQLLDRAERTRQP 589

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            +I+  D+D+FK +ND +GHP+GD+V+  ++  L+          R GGEEFA     + 
Sbjct: 590 AAILLCDVDHFKNVNDTYGHPIGDEVLRQVAGVLLRSVRKIDIPARYGGEEFAVVLEATD 649

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247
            + A  LA  +RK +    ++   GP   +T+S GIA         + +I RAD ALY+A
Sbjct: 650 LEGAMNLAERIRKDVAALVVDSDKGP-FQVTMSIGIASFPDDATDRAVLIERADSALYLA 708

Query: 248 KKSGRNRVVCF 258
           K+SGRNR + +
Sbjct: 709 KESGRNRCMSY 719


>gi|117618033|ref|YP_857544.1| GGDEF domain-containing protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559440|gb|ABK36388.1| GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 352

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 6/191 (3%)

Query: 72  VIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YN 126
           +   +T   + G+  ++   + +L      +S+LS  D L+ L N  A    L +     
Sbjct: 160 ITAQLTADAMPGWHIVTLRDIHDLHCMIEEVSRLSCTDPLTELGNRRAAGQQLQALWLQG 219

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           E  S++  DID+FKQIND +GHP GD  +  ++  +         + R GGEEF     G
Sbjct: 220 EPFSLILCDIDHFKQINDRYGHPAGDAALCEVARIMTRQLQPAEHLARWGGEEFLLILPG 279

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
              ++    A  LR+      +    G S  +T+S G A +   + I +++  AD+ALY 
Sbjct: 280 VDAEQVVERAEQLRRQF-VGHVVTWEGQSFSLTMSLGCATQEEGQGIDSLLLVADKALYQ 338

Query: 247 AKKSGRNRVVC 257
           AK +GRNRVV 
Sbjct: 339 AKSNGRNRVVF 349


>gi|34498408|ref|NP_902623.1| hypothetical protein CV_2953 [Chromobacterium violaceum ATCC 12472]
 gi|34104262|gb|AAQ60621.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
          Length = 1390

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 12/186 (6%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            S + +L      + +++  D L+G+ N       L              ++ F D+D FK
Sbjct: 936  SDITQLKQHEAELDRVAHYDPLTGVPNRRLLSDRLRQAIVRANRSGRSCAVCFLDLDGFK 995

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
             +ND +GH VGD+++  +S+ L  +      + RLGG+EF        S +E  ++ + +
Sbjct: 996  AVNDKYGHAVGDQLLVTVSNNLKSILRGDDTLARLGGDEFVVLLSEVGSPEECMLVLDRV 1055

Query: 200  RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
                  S+        + +T S G++          T++  ADQA+Y+AK +G+NR   F
Sbjct: 1056 LAT--ASRPMPVGDAEVGVTASIGVSLYPQDNVDPDTLLRHADQAMYLAKDAGKNRYQLF 1113

Query: 259  SDIENN 264
             D EN+
Sbjct: 1114 -DPEND 1118


>gi|27377437|ref|NP_768966.1| hypothetical protein bll2326 [Bradyrhizobium japonicum USDA 110]
 gi|27350581|dbj|BAC47591.1| bll2326 [Bradyrhizobium japonicum USDA 110]
          Length = 435

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 91/199 (45%), Gaps = 14/199 (7%)

Query: 72  VIISITISLLLGYISGSILKE-------LFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           ++ ++T+ LLL + +  ++ +       L     R++  +  D L+GL N  AF + L  
Sbjct: 218 ILTAVTLILLLIWHTRRLVLQRQAFEDALHAEKERLAWQASHDWLTGLANRRAFEARLQG 277

Query: 125 YNEKLS-----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
             + ++     ++  D+D FK +ND+ GH  GD+++  +S  L         V RLGG+E
Sbjct: 278 ELDNIAAGSLGLILLDLDQFKNVNDSCGHLAGDRLLCQVSRLLQQDRRPHDLVARLGGDE 337

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIY 238
           F       S  +A  +A  LR+ +E             +T S GI         +   + 
Sbjct: 338 FGLILPRCSPFDATDIAERLRRALELFSFAWDD-RCFAVTASIGITCITDRDTTLEDAMR 396

Query: 239 RADQALYVAKKSGRNRVVC 257
           RAD A Y AK+ GRNRV  
Sbjct: 397 RADAACYRAKEKGRNRVQV 415


>gi|330966724|gb|EGH66984.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 1243

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 15/192 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + E   S +RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 792 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQQAERQQAWVVLMFLDLDRFK 851

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAA----IL 195
            IND+ GH  GD+++  ++ +L+        V R+GG+EF        + + A      +
Sbjct: 852 PINDSLGHAAGDRMLQEMATRLLACVSADDTVARMGGDEFTLLLQPDITREAALTRAIHV 911

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
           A  +   +      +  G    +T S GIA        +S ++  AD A+Y AK+ G+N 
Sbjct: 912 AERILTSL--VTPFVLEGREFFVTASIGIALSPQDGSELSKLMKNADTAMYHAKECGKNN 969

Query: 255 VVCFSDIENNTC 266
              +    N T 
Sbjct: 970 FQFYQTDMNATA 981


>gi|311696618|gb|ADP99491.1| diguanylate cyclase (GGDEF domain) [marine bacterium HP15]
          Length = 429

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 55/170 (32%), Positives = 80/170 (47%), Gaps = 11/170 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            + QLS  D L+GL N    +  L         Y +  S++  DID+FK IND++GHP G
Sbjct: 255 ELEQLSITDELTGLYNRRYMLRKLQESVAQGERYGDTFSLISLDIDFFKTINDSYGHPTG 314

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+   +D +         V R GGEEF      +   EA  +A  LR  ++       
Sbjct: 315 DAVLQRFADIIESRTRKSDIVARTGGEEFIIFMPNTGLSEAGHVAESLRIALQTESFVSD 374

Query: 212 SGPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRVVC 257
            G +   T SAG+      E     +  ++   DQ++Y AK++GRNRVV 
Sbjct: 375 EGETFGTTFSAGVVNWSGAESQTTSVRDLLSACDQSMYAAKRAGRNRVVA 424


>gi|296447289|ref|ZP_06889217.1| response regulator receiver modulated diguanylate cyclase
           [Methylosinus trichosporium OB3b]
 gi|296255154|gb|EFH02253.1| response regulator receiver modulated diguanylate cyclase
           [Methylosinus trichosporium OB3b]
          Length = 455

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 8/164 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+ +D L+GL N     + L S           L+++  DID+FK +ND+FGH  GD+V
Sbjct: 289 ELAAVDPLTGLNNRRYLETHLASLLDNAAHQGRALTLMILDIDHFKSVNDSFGHDAGDEV 348

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213
           +   + ++  V  +   + RLGGEEF      +    A  +A  +R  I++    I  +G
Sbjct: 349 LKNFARRMRRVVRSADLICRLGGEEFVIVMPDTPLAIATRVAERVRATIQSEPFCIDAAG 408

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +I +T S GIAER  +    +++ RAD+ALY +K +GRNRV  
Sbjct: 409 RTIPVTASIGIAERGREANPDSLLRRADKALYESKSAGRNRVTA 452


>gi|115351650|ref|YP_773489.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Burkholderia ambifaria AMMD]
 gi|115281638|gb|ABI87155.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Burkholderia ambifaria AMMD]
          Length = 860

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
             + E  +   RI  L+  D L+GL N +         +S      + ++++  D+D FK
Sbjct: 250 QDITERKMQQGRIEYLANHDALTGLPNRNLLSDRMEQAMSQARRTGQLVAVMVLDLDRFK 309

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND+FGH VGD ++  ++ +L         V RLGG+EF    +  +++ +A ++A  +
Sbjct: 310 HINDSFGHSVGDGLLRVVAARLKRSVRDGDTVARLGGDEFVVMLVNLATQADADVIARKI 369

Query: 200 RKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                  +        +H+T S G++          T++  AD ALY AK+ GRN    +
Sbjct: 370 LDTF--IEPFTLDEHDLHVTTSVGVSLCPTDGTNAETLLKTADAALYAAKEHGRNCYRFY 427

Query: 259 S 259
           +
Sbjct: 428 T 428


>gi|304438464|ref|ZP_07398404.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304368547|gb|EFM22232.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 605

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 57/190 (30%), Positives = 93/190 (48%), Gaps = 17/190 (8%)

Query: 81  LLGYISGSIL---KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           +L ++S  I    +EL     +++QL+  D L+ LLN       L             LS
Sbjct: 412 MLAFMSHFIRVSEEELHTVNQQLTQLAIRDTLTNLLNRREMERLLKEAVSVSQTQKTPLS 471

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  DIDYFK +ND +GH +GDKV+  +SD +           R GG+EF     G+   
Sbjct: 472 VILMDIDYFKGVNDTYGHDMGDKVLLTVSDAISHTIRGSDAGCRWGGDEFFIILQGAPLA 531

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKK 249
            A  +   +R+ +E +++        ++TIS G+A    ++     +   AD+ALY AKK
Sbjct: 532 VAGRVGERIRRRVEEAKMPFHH----NVTISVGVAAFDPEQDNELQLFKNADEALYQAKK 587

Query: 250 SGRNRVVCFS 259
           +GRN  V ++
Sbjct: 588 AGRN--VVYA 595


>gi|221633786|ref|YP_002523012.1| putative sensory box protein [Thermomicrobium roseum DSM 5159]
 gi|221155589|gb|ACM04716.1| putative sensory box protein [Thermomicrobium roseum DSM 5159]
          Length = 1056

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 8/170 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            +  ++ +L+  D L+G+ N ++ ++ L       E  + +  D+D FK +ND FGH VG
Sbjct: 590 RTREQLERLATTDELTGIANRASLLAHLDHVARAGEPFAALLIDLDGFKAVNDTFGHLVG 649

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++  ++ +L         VGRLGG+EF   A     + A  LAN +  ++  +     
Sbjct: 650 DALLREVAQRLRRSVRQDDLVGRLGGDEFLVLARVQDTEGARELANRI--LVALTHPFRI 707

Query: 212 SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFS 259
            G +IH+  S GIA  C   P     I+  AD ALY AK+ G+ RVV FS
Sbjct: 708 DGQTIHLGGSVGIA-FCDGRPCDTTEILRAADLALYEAKRRGKGRVVLFS 756


>gi|302035772|ref|YP_003796094.1| putative signal transduction response regulator, receiver and
           diguanylate cyclase domain (fragment) [Candidatus
           Nitrospira defluvii]
 gi|300603836|emb|CBK40168.1| putative Signal transduction response regulator, receiver and
           diguanylate cyclase domain (fragment) [Candidatus
           Nitrospira defluvii]
          Length = 310

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 56/188 (29%), Positives = 94/188 (50%), Gaps = 15/188 (7%)

Query: 84  YISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           +++ SIL   E   +  R++ L++ D L+GL+N + F   L          +  L+I+  
Sbjct: 112 FLARSILYAIERKRAQERLTYLAQHDQLTGLINRALFRDRLIHAMARSKRKDHPLAIMLL 171

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAA 193
           D+D FK +ND  GH VGD+++  ++ +L+        V R+GG+EF A   G S   +  
Sbjct: 172 DLDRFKAVNDTLGHDVGDQLLKVVATRLLECVREVDTVARMGGDEFTAILEGISGVADVL 231

Query: 194 ILANDLRKIIENSQINISSGP-SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
           ++A  +   +E+       GP  I I +S GI       E I  ++  AD+A+Y AK+ G
Sbjct: 232 VVAKRI---VESISTPFEIGPHRISIGVSIGITLYPLDDEDIDELLRHADKAMYAAKQQG 288

Query: 252 RNRVVCFS 259
            +R    S
Sbjct: 289 GSRFHFHS 296


>gi|228942560|ref|ZP_04105095.1| GGDEF domain protein [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228975493|ref|ZP_04136048.1| GGDEF domain protein [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228982126|ref|ZP_04142418.1| GGDEF domain protein [Bacillus thuringiensis Bt407]
 gi|228777664|gb|EEM25939.1| GGDEF domain protein [Bacillus thuringiensis Bt407]
 gi|228784287|gb|EEM32311.1| GGDEF domain protein [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228817153|gb|EEM63243.1| GGDEF domain protein [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326943212|gb|AEA19108.1| GGDEF family protein [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 351

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 116/242 (47%), Gaps = 15/242 (6%)

Query: 27  FMIYFSIFFSIFIATV---IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           + I  S    IFIA +   I +  ++L    L+      YIL  ++S+V++ +  S+  G
Sbjct: 108 YTILLSGIGVIFIARIQTSITLKLVWLHVYCLSILIVPMYILFNDISVVVLYLISSITTG 167

Query: 84  YI---SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVF 133
           YI   S + + +    + ++ Q + ID L+GL N   F   +  +       N+ L ++ 
Sbjct: 168 YITFVSTNYVLQSNELFQKMKQYATIDALTGLGNVRQFDLEMNHHISNKNMKNDSLCLLL 227

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK +ND +GHP GD+V+  +   L      P    R GGEEFA            
Sbjct: 228 IDIDHFKYVNDTYGHPAGDEVLKQVGCILRETSQFPDLAFRKGGEEFALLIPNKGLAYGI 287

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +   +R  +E+    +  G  I IT+S G++E   +      I  AD ALY +K++GRN
Sbjct: 288 CMGEQIRTAVESHPFQLLDGTKIKITVSVGVSEY--EGSSEQFIQAADDALYYSKRNGRN 345

Query: 254 RV 255
           +V
Sbjct: 346 KV 347


>gi|254521746|ref|ZP_05133801.1| diguanylate cyclase [Stenotrophomonas sp. SKA14]
 gi|219719337|gb|EED37862.1| diguanylate cyclase [Stenotrophomonas sp. SKA14]
          Length = 479

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 15/192 (7%)

Query: 78  ISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128
           +  LLGY   S+L ++ I   R  +  L+R D L+GL N  +F  SLG+ + +       
Sbjct: 276 LGALLGYALRSVLSQVDIQRQRDELETLARRDALTGLGNRRSFDESLGAAHRRARRQGLG 335

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGS 187
           L+++  DID+FK++ND +GHP GD+ +  ++  L          + R GGEEF AA   +
Sbjct: 336 LAVLMIDIDHFKRLNDTYGHPEGDRRLRAVAAILDGCLQRGDDLLARYGGEEFIAALPSA 395

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALY 245
               A  L   LR  +E++ +  + G    +TIS G+A +   +    S ++  ADQALY
Sbjct: 396 EATHALELGERLRAAVESAALPAADGQ---VTISVGVAWQAAGDEREPSDLVAHADQALY 452

Query: 246 VAKKSGRNRVVC 257
            AK+ GRN V  
Sbjct: 453 RAKRGGRNCVHL 464


>gi|194446695|ref|YP_002041251.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194405358|gb|ACF65580.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 570

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 11/203 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+ +  T  LL+ + +   ++K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 +  S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
            AD+ LY AK+SGRNR+ C SD 
Sbjct: 542 LADKRLYYAKQSGRNRI-CASDA 563


>gi|110835527|ref|YP_694386.1| GAF/PAS/GGDEF domain-containing protein [Alcanivorax borkumensis
           SK2]
 gi|110648638|emb|CAL18114.1| GAF/PAS/GGDEF domain protein [Alcanivorax borkumensis SK2]
          Length = 487

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 18/178 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           EL      ++ ++R D L+GL N    +             +E +S++F D+D+FKQ ND
Sbjct: 311 ELEELNQELASMARTDPLTGLYNRLVLMEGLRQEFSRCERRSEPMSVIFMDVDHFKQYND 370

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           ++GH  GD  +  +++ L  V      + R GGEEF A    ++ Q+A  +A   R+ + 
Sbjct: 371 SYGHVEGDAALQAVAEALRPVIRDTDVLARYGGEEFVALLPTANSQDAERVAERCRRAVA 430

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIST------IIYRADQALYVAKKSGRNRVV 256
                  S  S  +++S G+A     +          ++  AD+ALYVAK +GRNRV 
Sbjct: 431 EI-----SSLSRPVSLSVGVATLRFGDEADETKSPESLLSAADRALYVAKGAGRNRVH 483


>gi|296108043|ref|YP_003619744.1| hypothetical protein lpa_03512 [Legionella pneumophila 2300/99
           Alcoy]
 gi|295649945|gb|ADG25792.1| hypothetical protein lpa_03512 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 552

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 85/205 (41%), Gaps = 14/205 (6%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           E I  EN   ++ S+    +   IS  +L+E       +   S  D LSGL N       
Sbjct: 351 EQINKENNQEILASMMAEQIALGISNIMLRET------LRNQSLRDVLSGLYNRRYLNEV 404

Query: 122 LGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L     +       L+++  DID+FKQ ND FGH  GD VI   ++ L  V        R
Sbjct: 405 LDRELNRCARKSLSLAVLMLDIDHFKQFNDKFGHEAGDMVIQAFANVLRQVTRKEDIACR 464

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
            GGEEF         + A   A  +   +    +         ITIS G+     H   +
Sbjct: 465 YGGEEFILIIPEIDLEAALQRAQSIHDAVSRIHLRYGGNALTQITISIGLTMYPAHGNDM 524

Query: 234 STIIYRADQALYVAKKSGRNRVVCF 258
             +I  AD ALY AK SGRN+ V +
Sbjct: 525 QDLITAADNALYEAKNSGRNKTVLY 549


>gi|114561654|ref|YP_749167.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114332947|gb|ABI70329.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 641

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 60/179 (33%), Positives = 95/179 (53%), Gaps = 11/179 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL     ++++ + ID L+G+ N SAF   L             +S++  DID FK I
Sbjct: 457 LRELNEVNQKLTEQNTIDSLTGVKNRSAFDRRLIAEGRISRRQQTPMSLLMIDIDKFKNI 516

Query: 143 NDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD  I  +++ L   V      V R GGEEFA     +  + A ++A  +R+
Sbjct: 517 NDQYGHLSGDYTIKMIANTLCEYVKRPTDLVSRFGGEEFAIILPCTDIEGALLVAEQIRQ 576

Query: 202 IIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            I    I + +G +I +T+S G++E      E    ++ +AD+ALY AK+SGRN+V  +
Sbjct: 577 AISELTI-VHNGHTIPLTVSIGVSETIIESDEHPMLLLEQADKALYKAKRSGRNKVCYY 634


>gi|188580802|ref|YP_001924247.1| diguanylate cyclase [Methylobacterium populi BJ001]
 gi|179344300|gb|ACB79712.1| diguanylate cyclase [Methylobacterium populi BJ001]
          Length = 416

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 111/242 (45%), Gaps = 19/242 (7%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL 81
           ++ +  +  F  +F +F+ ++  +   F      +P  G+  ++ +    V I +    +
Sbjct: 150 WTQYVVLTGFGAYFFVFLLSIGVVH--FANERMASPDSGIYSLVFDLWCGVFIQVGYLAM 207

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDI 136
           +G            +  ++S+L+  D L+GL N     +++G  +        +I+  DI
Sbjct: 208 VG----------ERANLKLSRLAETDPLTGLANRRGLFTAIGRRSGPGGALRCAILLADI 257

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK IND +GH  GD  +   +++L  V      + R GGEEF      +    A  +A
Sbjct: 258 DHFKSINDTYGHDGGDAALIGFAERLRSVMRKDDIIARWGGEEFLVVLDQADAAAATAVA 317

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255
             LR+       ++ +G ++ +T S G++     E  I   + RAD ALY AKK GRNRV
Sbjct: 318 ERLRRTAAGQPFSV-NGAALTVTASIGVSIVAAGEERIDAALSRADAALYAAKKGGRNRV 376

Query: 256 VC 257
             
Sbjct: 377 CL 378


>gi|218246860|ref|YP_002372231.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8801]
 gi|257059902|ref|YP_003137790.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8802]
 gi|218167338|gb|ACK66075.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8801]
 gi|256590068|gb|ACV00955.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8802]
          Length = 317

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 59/193 (30%), Positives = 104/193 (53%), Gaps = 18/193 (9%)

Query: 81  LLGYISGSILKELFISYNRISQ-------LSRIDCLSGLLNHSAFIS-------SLGSYN 126
           LL  +   +  +L  + +R+ +       L+  D L+G+ N   F+         +  Y+
Sbjct: 118 LLARVKTHL--QLKSAQDRLKKALADIKTLATTDPLTGVFNRRFFLEFAQKEISRVHRYD 175

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             LS +  D+D+FKQIND +GH +GD+V+ FL+  L+ +      + RLGGEEFA     
Sbjct: 176 YSLSTLMLDVDHFKQINDTYGHNIGDEVLKFLTQVLLKIIRKADCLARLGGEEFAILLPQ 235

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALY 245
           +  + A  LA  + +++  S++N+ +G  I +T+S G++     ++ I   + RAD+AL+
Sbjct: 236 TPLEGAEELARRILQVLRKSELNL-AGKIIRLTLSIGVSSYQVSEDTIEESLKRADRALF 294

Query: 246 VAKKSGRNRVVCF 258
            AK  GR+R V +
Sbjct: 295 AAKNQGRDRFVIY 307


>gi|170699368|ref|ZP_02890415.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           IOP40-10]
 gi|170135740|gb|EDT04021.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           IOP40-10]
          Length = 322

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 100/203 (49%), Gaps = 11/203 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           L     +  + +TIS +       + +E   +  ++ + +  D L+G+ N   F + L  
Sbjct: 123 LTRGREVEAVCVTISDVTH--VSVMQREREEAVAKLREHANRDGLTGIANRRFFEARLGD 180

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   LS++ FD+D+FK IND FGH  GD V+   + ++  +       GR GG
Sbjct: 181 EFARWQRYGGDLSMLLFDLDHFKTINDRFGHAAGDAVLRETARRVASIVRAQDTFGRFGG 240

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-I 236
           EEFA     ++  EA  +A+ LR  I ++ ++ + G S+ +T S G A        S  +
Sbjct: 241 EEFALLLPCTNLDEAMRVADKLRDAIGSTPVD-AEGVSVPVTASVGGACATVGATASDVL 299

Query: 237 IYRADQALYVAKKSGRNRVVCFS 259
           +  AD ALY AK+ GR+R + ++
Sbjct: 300 VNEADTALYRAKRLGRDRSIAYT 322


>gi|311281055|ref|YP_003943286.1| diguanylate cyclase [Enterobacter cloacae SCF1]
 gi|308750250|gb|ADO50002.1| diguanylate cyclase [Enterobacter cloacae SCF1]
          Length = 354

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 119/269 (44%), Gaps = 22/269 (8%)

Query: 8   FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYIGLTPFY------ 59
           F  +W  H       F+  +   +  ++    FI  + F  NI  F +   P        
Sbjct: 78  FGCLWAWHVAIKAPLFTGASVNYLIIALLGIFFIGVIAFSNNIVAFTLHSLPVLIACLII 137

Query: 60  --GLEYI-LVENLSLVIISITISLLLG----YISGSILKELFISYNRISQLSRIDCLSGL 112
             G  ++ ++  ++L ++ I++  L+       +  ++ +L      ++ LS +D L+GL
Sbjct: 138 DNGAHWVRMLYCIALPLVGISLQSLIQKRNDDFAQGLMYKLLEERQTLNDLSMLDPLTGL 197

Query: 113 LNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     + L +          ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 198 YNRRGLQNRLETLLALDGSGHFVLLLDIDHFKAYNDHYGHMMGDQALIQVSAAIRNAVRS 257

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      ++   A   A  +R+ + + +I      ++  ++TIS G+A 
Sbjct: 258 RDIVTRYGGEEFMVLLTNTTPDGALQSAERIRQRVYDLKIPHMFNQTVATNVTISIGLA- 316

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRV 255
               + +   +  AD+ALY AK  GRN +
Sbjct: 317 PLEGDDVEAALENADKALYEAKHMGRNSI 345


>gi|300692375|ref|YP_003753370.1| hypothetical protein RPSI07_2743 [Ralstonia solanacearum PSI07]
 gi|299079435|emb|CBJ52108.2| conserved exported protein of unknown function, GGDEF domain
           [Ralstonia solanacearum PSI07]
          Length = 592

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 9/177 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
            +  E       ++ ++  D L+ LLN  AF +   +         ++++++ FD+D+FK
Sbjct: 395 RLEHERARLMEELATMAETDSLTQLLNRRAFETRARAMCEARGTEAQRIALIMFDVDHFK 454

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+ +  ++D     +     V R+GGEEFA  AL  +   A +LA  +R
Sbjct: 455 RINDTYGHAAGDEALRTVADLCRAHWRQSDIVARIGGEEFAVVALVDTATHARVLAERMR 514

Query: 201 KIIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + I  +++   S P   +T S G  +A       +  ++ RAD  LY AK +GRNRV
Sbjct: 515 QAIAGARVPAGSAPEHGMTASFGVAVASVADAPELEALLRRADHLLYQAKLAGRNRV 571


>gi|240139038|ref|YP_002963513.1| putative diguanylate cyclase with GGDEF motif; putative membrane
           protein [Methylobacterium extorquens AM1]
 gi|240009010|gb|ACS40236.1| putative diguanylate cyclase with GGDEF motif; putative membrane
           protein [Methylobacterium extorquens AM1]
          Length = 498

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 12/208 (5%)

Query: 61  LEYILVENLSLVIISITI----SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           +E    E  +++ +++ +    ++LL  + G  L+        +++L++ D L+GL N  
Sbjct: 288 IEAEWRETAAVIGLAVLVLCGSTVLLSLLFGRELRRSAAMQAELARLAQTDVLTGLPNRR 347

Query: 117 AFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGT 168
            F +               L+++  D D+FK+ ND +GH VGD V+  L+D L   V   
Sbjct: 348 HFETVFAQAWGTSRRTGAPLALILIDADHFKRYNDRYGHAVGDAVLRGLADSLSASVRRP 407

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
              V R+GGEEFA     +    A  ++  + + I    +         +T+S G+A   
Sbjct: 408 GDLVARVGGEEFAVLLPRTDHDGAMRVSETIHRAIAGFAMPSVGIGPGTVTVSLGLAVDS 467

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256
                  +  RAD ALY AK  GRN+  
Sbjct: 468 GSGTAEDLYRRADAALYEAKAGGRNQTR 495


>gi|332703622|ref|ZP_08423710.1| diguanylate cyclase with GAF sensor [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553771|gb|EGJ50815.1| diguanylate cyclase with GAF sensor [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 492

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 66/213 (30%), Positives = 103/213 (48%), Gaps = 13/213 (6%)

Query: 54  GLTPFYGLEYILVENLSLVIISI-TISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112
           GLTPF  L     E +SL    + TI+  + +++ ++     + Y  +  ++  D L+ +
Sbjct: 270 GLTPFGLLALSSKEPVSLARDQVQTITAAVQHLALALKN--ALLYREVQTMADFDGLTRI 327

Query: 113 LNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N  +F   L         Y + +S++  D+D+FK+IND+FGH  GD V+  L   L   
Sbjct: 328 HNRQSFDRRLREELARHKRYQQPISLLMLDLDHFKRINDSFGHEAGDMVLRELGRILSES 387

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                   R GGEEF      + E  A  LA  LR  I   +I    G +  +T+S GI+
Sbjct: 388 MRETDIAARYGGEEFVVILPHTDESNAHTLAQRLRAAI-CGKIFHFHGQTFQVTVSIGIS 446

Query: 226 ERCHKE-PIST-IIYRADQALYVAKKSGRNRVV 256
                   + T ++  ADQALY+AK++GRN V 
Sbjct: 447 SIDAASVDLDTNLVREADQALYLAKRNGRNMVC 479


>gi|283850372|ref|ZP_06367661.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
 gi|283574398|gb|EFC22369.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
          Length = 290

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 62/188 (32%), Positives = 94/188 (50%), Gaps = 10/188 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVF 133
           ++ YI   +L E +    +    +  D L+GL N   F   +         +    S++ 
Sbjct: 96  VIKYIKNPVLIEEWQLKEK-ENSADKDELTGLFNRRYFNQQMHQESEKFRRFGSPFSLLM 154

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK+ ND  GH  GD+V+  ++D L  +      V R GGEEFA     ++ ++AA
Sbjct: 155 IDIDHFKRFNDTNGHQAGDEVLKIVADVLTRIGRAYDKVTRYGGEEFAVILPLTTRKDAA 214

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
             A  LR  IE  +I  +     H+T+S GIA         + ++ RADQALYVAK++ R
Sbjct: 215 NAAERLRTAIEKQRILFAGKDLGHVTVSIGIATCPIDSLDKTMLVQRADQALYVAKRT-R 273

Query: 253 NRVVCFSD 260
           N VV + D
Sbjct: 274 NAVVAYCD 281


>gi|258404802|ref|YP_003197544.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692]
 gi|257797029|gb|ACV67966.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692]
          Length = 355

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 10/180 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L  +  RI++L R D L+G+ N       L         +   L +V  D+D FK +ND 
Sbjct: 166 LEAANTRINELLRTDPLTGVANRRHVEDFLGQAVARSERHGVPLCVVMCDLDRFKAVNDT 225

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH VGD+ +   +  L+    T   VGR GGEEF      ++ +    LA+ +R+ +  
Sbjct: 226 YGHAVGDQALQGFASVLLENCRTEDLVGRFGGEEFLLVLQDTTLEAGGCLADRMRQKVAT 285

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           +   +     +  T S G+A     E   ++I RAD+A+Y AK  GR+RVV  ++ + ++
Sbjct: 286 A---VLVAEGVQQTASFGVAAYRAGEGSESVIQRADKAMYAAKNKGRDRVVLENETQPDS 342


>gi|77460772|ref|YP_350279.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens
           Pf0-1]
 gi|77384775|gb|ABA76288.1| putative sensory box GGDEF/EAL domain protein with PAS/PAC sensor
           [Pseudomonas fluorescens Pf0-1]
          Length = 757

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 93/181 (51%), Gaps = 11/181 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQ 141
            + E  ++  +++ L+R D L+GL N +  I  L               + + D+D+FK+
Sbjct: 303 DITERRLAEEKMNLLARTDGLTGLANRATLIERLHQAFAAARRGAAPFAVFYLDLDHFKR 362

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           IND  GHPVGD ++  ++ ++         V RLGG+EFA   L  S   ++A +A  +R
Sbjct: 363 INDTLGHPVGDLLLQEVAQRIKSNVRENDVVARLGGDEFAILQLDVSDPTQSATVATKIR 422

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
             +  SQ    +G ++H ++S GI           +++  AD ALY AK++GRN+   +S
Sbjct: 423 DAL--SQPYHLTGNALHTSVSIGICLYRSTSLDADSLLAGADMALYRAKETGRNQYQFYS 480

Query: 260 D 260
           +
Sbjct: 481 E 481


>gi|89092154|ref|ZP_01165109.1| GGDEF family protein [Oceanospirillum sp. MED92]
 gi|89083889|gb|EAR63106.1| GGDEF family protein [Oceanospirillum sp. MED92]
          Length = 314

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 63/175 (36%), Positives = 85/175 (48%), Gaps = 9/175 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + E      R+  L+  D ++G  N   F  S+         Y    S+ F DIDYFK++
Sbjct: 139 ITEKKRLEQRLKDLAEKDPMTGAYNRRFFRESIDQHYATFKRYGTTYSLAFIDIDYFKKV 198

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH VGD VI  L   +     T   + R GGEEF       +  EA ++A  LR  
Sbjct: 199 NDQFGHDVGDGVICHLVTHIQEQLRTTDLLSRFGGEEFVVLFPHINLDEACLVAERLRAT 258

Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           IE +    S    +  T+S GI+E R   E +  I+ RAD ALY +K SGRN+V 
Sbjct: 259 IEMTPYK-SINHKVPFTVSIGISEVRAEDESVEDILKRADSALYQSKSSGRNKVT 312


>gi|296101147|ref|YP_003611293.1| diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295055606|gb|ADF60344.1| diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 325

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 66/276 (23%), Positives = 123/276 (44%), Gaps = 22/276 (7%)

Query: 8   FLSIWLCHEKNLESF--SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL---- 61
           F  +W     +  S         +  ++   +FI ++ F  NI  F +   P + +    
Sbjct: 49  FGILWAWQIASKFSLITQDRATYLIMALLTVLFIGSLAFAINIKAFTLHSLPAFIVCLWL 108

Query: 62  ----EYI-LVENLSLVIISITISLLLGY----ISGSILKELFISYNRISQLSRIDCLSGL 112
                ++ ++ +  L +++I +  +L       +  +L  L      ++ LS +D L+GL
Sbjct: 109 SPSEHWLRMIYSFILPVVAIGVHHVLQRRNDRFAQELLSRLLEERETLTDLSMMDPLTGL 168

Query: 113 LNHSAFISSLGS----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N     S L +     N +  ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 169 YNRRGLQSRLENLPAVENGEHFVLLMDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 228

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF       S + A   A  +R+ + + +I       +  ++TIS GIA 
Sbjct: 229 RDIVARFGGEEFMVLLTNISLEHARQTAERIRQKVYDLKIPHMFNERVATNVTISIGIAI 288

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
               E     + +AD+ALY AK  GRN ++   +++
Sbjct: 289 F-ENEDAEGALEKADKALYEAKHLGRNNILLSEELQ 323


>gi|89900249|ref|YP_522720.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
 gi|89344986|gb|ABD69189.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
          Length = 636

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 53/180 (29%), Positives = 90/180 (50%), Gaps = 11/180 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
              L +L ++ +++ +LS +D L+ + N + F  +L             LS++  D+D+F
Sbjct: 449 NRTLGQLKLANDQLQRLSNMDGLTQIGNRAFFDRALALEHRRADRQKSPLSLIMIDVDHF 508

Query: 140 KQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           K +ND++GH  GD  +  ++  L   +      + R GGEEF    + S++Q++  LA  
Sbjct: 509 KLVNDSYGHMGGDACLRAVAHLLQPRIQRVGDVLARYGGEEFVILLVNSNQQDSVALAEG 568

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256
            R  IE   +    G +IH+T S G+A     +      ++  AD+ALY AK  GRN V 
Sbjct: 569 FRADIEQLHVPFEGG-TIHVTASFGVACGIPDQYLSPQELLAHADKALYQAKHDGRNCVR 627


>gi|329998476|ref|ZP_08303113.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
 gi|328538666|gb|EGF64762.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
          Length = 379

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 66/276 (23%), Positives = 121/276 (43%), Gaps = 33/276 (11%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIF---IANIFLFYIGLTPF------ 58
            L++ LC      S S + F+ ++++ F+  +  ++    +  ++  + G+T F      
Sbjct: 107 LLALSLC-----WSLSNYCFIFFWTLPFAWPLLVILMTTGLTALYHHWPGITAFMLPLWV 161

Query: 59  ----YGLEYILVENLSLVIISITISLLLGYISGSILK----------ELFISYNRISQLS 104
                G++      +  +I+    + +L Y    + +          E      R+  ++
Sbjct: 162 TALLAGIQLHYHTEIRFLILWAIFTAILLYGRRILQRWYDEAWDTHQENMQLIQRLESIA 221

Query: 105 RIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
             D L+G  N  A  + L         L+++  D+DYFK+ ND +GH  GD+ ++ ++  
Sbjct: 222 NQDALTGTANRRALNAYLAAIWQQKTPLALMMIDVDYFKRYNDRYGHQAGDECLSSVAQV 281

Query: 162 LVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-IT 219
           L +        V R GGEEF     G S   A  +A  +++ I  + +  ++      +T
Sbjct: 282 LKMAVRAEGDLVARYGGEEFVVVLPGVSLAHATAIAERIQQKIREAGLPHAASAVASEVT 341

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S GI       PI T+I RAD ALY AK  GRN+ 
Sbjct: 342 VSIGIVASDGTVPIETLIARADSALYQAKNKGRNQW 377


>gi|257093757|ref|YP_003167398.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257046281|gb|ACV35469.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 1003

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 89/196 (45%), Gaps = 23/196 (11%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           +    +     S  +I +L+  D L+GL N  +F+  L          N +++++F D+D
Sbjct: 508 VVVRDITLQKHSEEKIRRLAYFDTLTGLPNRQSFLERLDRELLRARRTNHRMALLFLDLD 567

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV------------GRLGGEEFAAAAL 185
            FK+IND  GH  GD ++  ++D+L        F+             RLGG+EF     
Sbjct: 568 GFKRINDTLGHSAGDCLLQTVADRLQEKLRAGAFIARPALDESSLHFARLGGDEFTVVLP 627

Query: 186 GSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQA 243
                + A ++A  +++++   +  +     I +T S GIA         +T++  AD A
Sbjct: 628 DVDTVETACLIAQRIQELL--GRPTLIGEQEIAVTSSIGIALFPDDGADAATLLKHADTA 685

Query: 244 LYVAKKSGRNRVVCFS 259
           +Y AK+ GRN    + 
Sbjct: 686 MYYAKEQGRNNWQLYD 701


>gi|217978836|ref|YP_002362983.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylocella silvestris BL2]
 gi|217504212|gb|ACK51621.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylocella silvestris BL2]
          Length = 1248

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 11/213 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y  VE  S  +      LL    + + + E   +  +I+ L+R D L+GL N + F+  L
Sbjct: 764 YRWVEGYSTPVRDSAGRLLEIEGTMTDITERKEAQEKIALLARTDSLTGLANRATFLDRL 823

Query: 123 GSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                         ++++ D+D FK +ND  GH +GD ++  ++D+L           RL
Sbjct: 824 QQSFAAAKRGASPFAVLYLDLDRFKDVNDTLGHGMGDLLLKAVADRLTSGCREADLPARL 883

Query: 176 GGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-I 233
           GG+EFA      +    A  LA  +R ++  +         + IT+S GIA    +    
Sbjct: 884 GGDEFAILQSELTDPSGATALAATIRDLL--TAPYRFGESEMQITVSIGIASYTSESSGP 941

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             ++ +AD ALY AK+ GR++    S+  +   
Sbjct: 942 KEMLEQADLALYRAKEEGRDQFRFHSEELDKEA 974


>gi|170727525|ref|YP_001761551.1| PAS/PAC sensor-containing diguanylate cyclase [Shewanella woodyi
           ATCC 51908]
 gi|169812872|gb|ACA87456.1| diguanylate cyclase with PAS/PAC sensor [Shewanella woodyi ATCC
           51908]
          Length = 482

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 93/204 (45%), Gaps = 19/204 (9%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF- 118
               ++ E   LVI +IT            + E      ++  L+  D L+G  N   F 
Sbjct: 278 AFSTLIFEKKKLVITAIT-----------DITERKRLETQLRILASTDPLTGAYNRRCFN 326

Query: 119 ------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
                 +SS     ++ +I+  D+D+FK IND FGH  GD V+      +         +
Sbjct: 327 ELSQKSMSSTERQEQEFTILLIDLDFFKSINDKFGHAAGDDVLIETVKAINTCIRESDIL 386

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232
           GR GGEEF  A   S  ++A  +AN +R  IEN  +  + G  I +T S G+A       
Sbjct: 387 GRYGGEEFVVALPNSDNKKAREVANRIRLCIENMVVK-TQGHDIKLTASIGLATSSGGHQ 445

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
           +   I +AD  LY AK +GRN+VV
Sbjct: 446 LEKQINQADTYLYYAKDNGRNQVV 469


>gi|330875724|gb|EGH09873.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 730

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 101/213 (47%), Gaps = 19/213 (8%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G   +L  ++  + ++ T  LL+   +   + +L  +  +I  L+  D L+GL N +  +
Sbjct: 246 GAPLVLDVSVEFITLNNTACLLM---NARDIGQLKSAQAQIQHLTYHDPLTGLPNRALLM 302

Query: 120 SSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L          N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         V
Sbjct: 303 DRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSVIAARLEASVRQEDTV 362

Query: 173 GRLGGEEFAAAALGSS------EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
            RLGG+EF     G          +  +LA++LR ++         G  + +T S GI  
Sbjct: 363 ARLGGDEFVVLICGLDGSLEQVTHQVRVLADNLRVLLAEPMF--LDGHRLQVTPSVGIVL 420

Query: 227 RCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
                   + ++ RAD ALY AK SGRN    F
Sbjct: 421 IPDDGLTPADLLKRADIALYRAKDSGRNASQFF 453


>gi|253996162|ref|YP_003048226.1| diguanylate cyclase [Methylotenera mobilis JLW8]
 gi|253982841|gb|ACT47699.1| diguanylate cyclase [Methylotenera mobilis JLW8]
          Length = 601

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 59/181 (32%), Positives = 89/181 (49%), Gaps = 8/181 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFD 135
              +   ++EL    + I Q++  D L+G LN      +L         +N  L +   D
Sbjct: 412 ALAAEKRIEELTAELDYIGQVAHQDYLTGALNRRGMDEALEREFSRADRHNTTLCVAMLD 471

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK++ND  GH  GD+ +  L+  L  V  T   + R GGEEF      + + EA  +
Sbjct: 472 IDHFKKLNDTLGHVTGDEALTHLAKVLKEVLRTTDVLARYGGEEFIIILPATPQDEAVKV 531

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              +++ +      + +   + IT SAG+AER   E    +I RAD ALY AK SGRNRV
Sbjct: 532 ITRVQREL-TKNFFMHNNERVLITFSAGVAERVGDESPEVLIPRADAALYKAKHSGRNRV 590

Query: 256 V 256
           +
Sbjct: 591 I 591


>gi|157376608|ref|YP_001475208.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157318982|gb|ABV38080.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 298

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 62/221 (28%), Positives = 109/221 (49%), Gaps = 17/221 (7%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYI---SGSILKELFISYNRISQLSRIDC 108
           Y+    F  +++  + +L + II    ++ +  +   S    +++  +Y  + Q +  D 
Sbjct: 57  YVIYAKFSPVQFSQLFDLVVPIIFFGGAIFVFVVCSLSLRTTRDIMQNYA-LKQENITDS 115

Query: 109 LSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L G+ N       L        +Y++ LSI   DID+FKQ+NDN+GH VGD V+  ++  
Sbjct: 116 LMGIFNRRYLDRRLKDETERALNYSQPLSIFLIDIDHFKQVNDNYGHQVGDLVLKNIAQL 175

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-----SGPSI 216
           +         + R GGEEF      + +  +  LA  LR ++E+ Q+ +         SI
Sbjct: 176 IKHSLRESDVLARFGGEEFVVILPRTKDSTSYTLAERLRHVVEDFQLTLPEESDKDSLSI 235

Query: 217 HITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +T+S G+A      +    +I  AD+ALY AK++GRN+V+
Sbjct: 236 SVTVSIGVAGLNAQCKDCQCLIENADRALYQAKRNGRNQVI 276


>gi|71909362|ref|YP_286949.1| PAS:GGDEF [Dechloromonas aromatica RCB]
 gi|71848983|gb|AAZ48479.1| PAS:GGDEF protein [Dechloromonas aromatica RCB]
          Length = 721

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 80/178 (44%), Gaps = 9/178 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L+E+      + + +  D L+G  N      +L             LS++  D+D+FK+I
Sbjct: 541 LEEIEKLQVALREQAIRDSLTGCFNRRYLDETLERELSRSRREGYPLSLLILDLDHFKRI 600

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD+ +  L++ L         + R GGEEF           AA  A   R  
Sbjct: 601 NDTYGHMAGDQALIVLAETLRAGIRHEDVLCRYGGEEFVILMPRMPLAIAAERAELWRSK 660

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I   ++   +   +  T SAG+A    H +    +   ADQALY AK  GRNRVV +S
Sbjct: 661 IAEIRVTFGN-FELSFTASAGVAAYPDHGKMPDELTQAADQALYTAKNEGRNRVVVYS 717


>gi|53804907|ref|YP_113464.1| sensory box protein [Methylococcus capsulatus str. Bath]
 gi|53758668|gb|AAU92959.1| sensory box protein [Methylococcus capsulatus str. Bath]
          Length = 976

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 26/220 (11%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
            + +I LTP +G +  ++  L++               G  + E+     RI  L+  D 
Sbjct: 506 LISHIRLTPEFGFDGEVMHALAI---------------GRDITEIDAYRRRIHHLAFFDS 550

Query: 109 LSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GL N       +            + +++  D+D FK+IND  GH +GD ++   + +
Sbjct: 551 LTGLPNREMLNKRIREVMDGNPRPGRQFALMMLDLDRFKEINDTLGHGIGDLLLGRAARR 610

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITI 220
           L+   G    V RLGG+EFA      +  QE   LA  +       +  +  G  + +++
Sbjct: 611 LLGAVGKDDTVARLGGDEFAVLVPAPAASQELTALAGRILDAFA--RPFLIEGRELFVSV 668

Query: 221 SAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
           S GIA        I T+   AD A+Y AK+ GRN    +S
Sbjct: 669 SLGIALYPRDCTGIDTLFRYADTAMYHAKRQGRNNFQFYS 708


>gi|114561386|ref|YP_748899.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114332679|gb|ABI70061.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 312

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 88/173 (50%), Gaps = 9/173 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDN 145
           L  ++ +I  L   D L+G+ N  ++             +N++LS++  DIDYFK INDN
Sbjct: 135 LEQAHQQIESLVNTDQLTGMHNRRSYNQLAKQECARAIRFNQQLSLLVIDIDYFKVINDN 194

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GD ++   +     +      + R+GGEEF      +  + A I+A  +R+ I  
Sbjct: 195 FGHDGGDSILKQFAQICSDLLRQSDSLSRIGGEEFTIILPMTDGEGAMIIAERIREHIAK 254

Query: 206 SQINISS-GPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
              + +    +I++T+S G++     +  I  +  RAD A+Y AK+ GRN+V 
Sbjct: 255 HSFHTTQTNNNINVTVSIGVSSLTAGDKVIQDLFSRADMAMYCAKRGGRNQVQ 307


>gi|224367590|ref|YP_002601753.1| putative diguanylate cyclase (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223690306|gb|ACN13589.1| putative diguanylate cyclase (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 354

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 62/187 (33%), Positives = 103/187 (55%), Gaps = 10/187 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKL 129
            ++++L     +I +++ I+  R++  + +D L+G  N   F + +         + + L
Sbjct: 154 IVNIILKSTGIAISRQMNIA--RLTDAASLDPLTGCYNRREFQNQIQRSVSDATRHKKPL 211

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           SI  FDID+FK++ND  GHP GD+V+  +S  +         + R GGEEF A    +++
Sbjct: 212 SIFMFDIDHFKRVNDTHGHPAGDEVLKEISRLVADNIRRGDTLARYGGEEFIAILPETAK 271

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            +A  LA+ LR  I++ +I   SG +I +T S GIAE       S ++  AD+ LY +K 
Sbjct: 272 HKAIELADRLRLKIQSKEIKTDSG-NIKVTASFGIAELHPHADSSRLVKDADEMLYKSKL 330

Query: 250 SGRNRVV 256
           SGRNRV+
Sbjct: 331 SGRNRVM 337


>gi|161613445|ref|YP_001587410.1| hypothetical protein SPAB_01161 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161362809|gb|ABX66577.1| hypothetical protein SPAB_01161 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 570

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 11/203 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+ +  T  LL+ + +   ++K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 +  S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
            AD+ LY AK+SGRNR+ C SD 
Sbjct: 542 LADKRLYYAKQSGRNRI-CASDA 563


>gi|239995752|ref|ZP_04716276.1| hypothetical protein AmacA2_14896 [Alteromonas macleodii ATCC
           27126]
          Length = 761

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 93/183 (50%), Gaps = 7/183 (3%)

Query: 81  LLGYISGSILKE-LFISYNRISQLSRIDCLSGLLNHSAFISS---LGSYNEKLSIVFFDI 136
           L G      L+E   ++  ++  L+  D L+GL N  AF+         + +  +   DI
Sbjct: 578 LAGLFYAVELEEARAVAEEKLRHLAMTDSLTGLYNRRAFLDECISFSKQHCRGCVAIVDI 637

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK++ND +GH  GD+ +  ++ ++      P  V RLGGEEFA   +G  ++E     
Sbjct: 638 DHFKKVNDTYGHDAGDQALIAVARKIAKHNQAPNVVARLGGEEFAIVMIGDKKEEIHRQL 697

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNR 254
             LR  +E  ++   +  +++++IS G        +   S ++  AD+ALY AK+ GRN+
Sbjct: 698 EALRIAVEEGRVTYKTD-TMNLSISIGATFIKDTFEADFSALLSLADKALYRAKEQGRNQ 756

Query: 255 VVC 257
           VV 
Sbjct: 757 VVW 759


>gi|163793349|ref|ZP_02187324.1| Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           domain [alpha proteobacterium BAL199]
 gi|159181151|gb|EDP65666.1| Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           domain [alpha proteobacterium BAL199]
          Length = 461

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 11/179 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQ 141
            + E       + +L+  D L+GL N  AF+            ++  +S+V  D+D+FK 
Sbjct: 282 DVTESHRLRQELERLATTDPLTGLSNRRAFLMRAREEVERAVRHDRPMSVVMIDVDHFKS 341

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +ND +GH +GD V+  ++  +      +     R GGEEF      ++   A  LA  +R
Sbjct: 342 VNDRYGHDIGDLVLQDVAATVQGALRNSGDVAARFGGEEFVLLLPETTVSGAQQLAERIR 401

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVC 257
              E + +    G  +  T S G+          I T++ RAD ALY AK++GRNRV  
Sbjct: 402 VAFERTAVETEQGA-VRFTASFGVDVFRSDMDTGIDTVLKRADDALYRAKEAGRNRVQL 459


>gi|116249172|ref|YP_765013.1| response regulator [Rhizobium leguminosarum bv. viciae 3841]
 gi|115253822|emb|CAK12217.1| putative response regulator/GGDEF domain transcriptional regulator
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 642

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 58/202 (28%), Positives = 92/202 (45%), Gaps = 13/202 (6%)

Query: 77  TISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NE 127
           T   ++  I+ +   E  L +S  ++  L+  D L+G++N  AF  +           N 
Sbjct: 436 TAMAVVSDITATKQAEIALRLSAEQLRNLAETDGLTGIVNRRAFDEAFARETAGSARKNT 495

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALG 186
             S++  DID FK  ND +GHP GD+ +  +S  L   V      V R GGEEF      
Sbjct: 496 PFSLLMVDIDRFKAYNDTYGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFVVLLPA 555

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQA 243
           +S + A I+A    +++    I  +      +T S GI+           + ++  AD A
Sbjct: 556 TSAKGAMIVAEQFARLLSQENIVHTGSEFGRVTASIGISCATGATLRLNPNRLLIEADAA 615

Query: 244 LYVAKKSGRNRVVCFSDIENNT 265
           LY AK  GRNR++  S  E ++
Sbjct: 616 LYDAKTQGRNRILAHSPEERHS 637


>gi|86358902|ref|YP_470794.1| urease-associated protein [Rhizobium etli CFN 42]
 gi|86283004|gb|ABC92067.1| probable urease-associated protein [Rhizobium etli CFN 42]
          Length = 283

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 83/232 (35%), Positives = 111/232 (47%), Gaps = 1/232 (0%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           + F +  S    IF   +I +    L ++GL P      I    +   +I  T+S +L  
Sbjct: 17  YVFALKMSFLAVIFSGVIIALTIPPLGFLGLLPVTLSHAISFGAIFSWLIGGTVSGMLSL 76

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQIND 144
            +G  + EL +S     +LSR D LSGLLN  AF  +L       S+V FD+D FK IND
Sbjct: 77  ATGFTMHELMLSRAEFEKLSRTDTLSGLLNRRAFTEALDRTEGDASLVIFDVDRFKAIND 136

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD VI  +S  L+  F     V RLGGEEF     G   +        +R  I 
Sbjct: 137 RFGHACGDAVITAVSAVLLSAFDELSVVARLGGEEFGVIVSGEPLEARLERIEAVRASIA 196

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              I ++    I ITIS G+A+         +   AD+ALY+AK  GRNRVV
Sbjct: 197 GRPI-VAEDCQIAITISGGVADLIAGRNKQQVYASADRALYLAKALGRNRVV 247


>gi|310778016|ref|YP_003966349.1| diguanylate cyclase with PAS/PAC sensor [Ilyobacter polytropus DSM
           2926]
 gi|309747339|gb|ADO82001.1| diguanylate cyclase with PAS/PAC sensor [Ilyobacter polytropus DSM
           2926]
          Length = 763

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 11/179 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           S + ++      +  LS  D L+G+ N   F               + +SI+  DID FK
Sbjct: 583 SDITDIRHMQEELKVLSIKDSLTGIYNRRGFEEMSERIFKESLRNKKNVSIIMLDIDKFK 642

Query: 141 QINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND++GH  GD+ +  ++++L          VGR GGEEF      ++ + A  +A  +
Sbjct: 643 LYNDHYGHQAGDECLKKIAEKLEKSCKRPSDIVGRYGGEEFIIFLPDTTLEGARTVAEKI 702

Query: 200 RKIIENSQI-NISSGPSIHITISAGI-AERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
           RK IEN +I ++ S     +T+S GI A   + E  +  +I +AD+ LY AK+ GRNRV
Sbjct: 703 RKNIENMEIEHVKSRHGGVVTVSLGISATVPNNEYEMEKLIGKADKMLYQAKELGRNRV 761


>gi|308185518|ref|YP_003929650.1| inner membrane protein yfin [Pantoea vagans C9-1]
 gi|308055798|gb|ADO07968.1| Inner membrane protein yfiN [Pantoea vagans C9-1]
          Length = 527

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 107/239 (44%), Gaps = 19/239 (7%)

Query: 32  SIFFSIFIATVIFIANIFLFYIG--LTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
           +I+F + I  ++  A +  F  G   +P   L   + +  S        ++   Y     
Sbjct: 282 AIWFVLGI--ILVTAGVIAFMAGRIASPLEKLADRVRDGGSEAQAESLATVKTWYYEADR 339

Query: 90  LKELFISYNR--------ISQLSRIDCLSGLLNHSAFISSLGSYNEKL--SIVFFDIDYF 139
           LKE    +          ++  +  D L+GL N   F +     + +    ++  DID+F
Sbjct: 340 LKEAVQEHRHAVAGHLAALNDEAMTDPLTGLCNRRGFSALAAQADSEHEQCVIAIDIDHF 399

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND +GH  GD V+  L+  L     T   V R GGEEF      ++  +AA  A  +
Sbjct: 400 KKINDWYGHDAGDAVLVSLAALLRQACRTGDIVSRFGGEEFILLLPDTTLADAARTAERI 459

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           R+ +  +    +      +TISAG+A R  +      ++ RAD+ALY AK +GRN V+ 
Sbjct: 460 RETVCATTFPFAG----TMTISAGVASRDDQSRDRDALLRRADEALYEAKAAGRNTVII 514


>gi|241662150|ref|YP_002980510.1| diguanylate cyclase [Ralstonia pickettii 12D]
 gi|240864177|gb|ACS61838.1| diguanylate cyclase [Ralstonia pickettii 12D]
          Length = 480

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 15/213 (7%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGL 112
            L P+  L +I    + L  +S++++   G ++    L+   ++ N + +L++ D L+GL
Sbjct: 266 ALAPWQRLSWI----VGLSSLSVSLAFCAGVWLLAFALRGRVMAENHLRELTQTDPLTGL 321

Query: 113 LNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VV 164
            N  A           L   + +LS++F D D+FK+ ND  GH  GD  + +L+  +   
Sbjct: 322 KNRRALDVALENEWDRLQRNDSRLSVLFIDADHFKRYNDAHGHAQGDVALQYLAQCISKH 381

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                    R GGEEF      + E  A  +A  +R  +E +   +        T+S G 
Sbjct: 382 ARRRGDLAARYGGEEFVVLLPDTGEAGATRIAEAIRAEVEGAGAPVGDTGLAPFTVSVGC 441

Query: 225 AERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
           A         ++ +   AD ALY AK+ GRNRV
Sbjct: 442 ATARRASFPSLNALTKAADDALYEAKRKGRNRV 474


>gi|261405817|ref|YP_003242058.1| diguanylate cyclase [Paenibacillus sp. Y412MC10]
 gi|261282280|gb|ACX64251.1| diguanylate cyclase [Paenibacillus sp. Y412MC10]
          Length = 529

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 54/180 (30%), Positives = 80/180 (44%), Gaps = 8/180 (4%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDY 138
           L  I G+  + +      + Q +  D L+GL N       L S+    E  +++  DID+
Sbjct: 349 LNRIMGAAAETMAKQTQSLQQEAITDPLTGLSNRRELERCLESWDALGEPYAVILLDIDH 408

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND +GH  GD+++  ++  +V          R GGEEF       S   A  +A  
Sbjct: 409 FKAINDTYGHQTGDQILKLVAAVMVHCAPADAVCSRFGGEEFVILLRERSLDTAYRMAER 468

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +R+ I  S    S      +T+S G++    H      +   AD ALY AK  GRNR V 
Sbjct: 469 IRRAILVSPTPYSG----TLTVSIGVSLYPEHGGNREDVFQAADMALYRAKGEGRNRTVA 524


>gi|163855670|ref|YP_001629968.1| signalling protein [Bordetella petrii DSM 12804]
 gi|163259398|emb|CAP41698.1| probable signalling protein [Bordetella petrii]
          Length = 703

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 63/278 (22%), Positives = 119/278 (42%), Gaps = 23/278 (8%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYI----------GLTPFY 59
           +IW        S       I  +    + IA + +I      +           G+  ++
Sbjct: 156 AIWCAFVLRRRSAKVDQLRIGAAAVMGLTIAGMHYIGMAAAEFPAGSICGAAQGGVQTYW 215

Query: 60  GLEYILVENLSLVIISITISLLLGYI---SGSILKELFISYNRISQLSRIDCLSGLLNHS 116
               I++  L+++ I++ +S+L   +   +  + KEL  +   ++ L+  D L+ L N  
Sbjct: 216 LGLTIILATLAILAIALIVSVLDQRMESRTALLAKELADANQELTYLALHDNLTKLPNRV 275

Query: 117 AFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
                LG   E+        +++F D+D FK +ND +GH +GD ++   + ++V      
Sbjct: 276 LLEDRLGQAMERARREKIRFALMFMDLDGFKAVNDVYGHLMGDMLLVAAAGRIVENTRGS 335

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC- 228
             V R+GG+EF   A      +A +LA+ L   I   +  + +G  +H++ S GIA    
Sbjct: 336 DTVARVGGDEFVVLAQVDEPTDAGVLASKLVAAI--GEPYLVNGHELHVSTSIGIAIYPG 393

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           + E    ++  AD A+Y  K +GR+    F        
Sbjct: 394 NGESQDELLTNADAAMYHVKGTGRDDYCFFEASMTANA 431


>gi|323498784|ref|ZP_08103770.1| diguanylate cyclase [Vibrio sinaloensis DSM 21326]
 gi|323316146|gb|EGA69171.1| diguanylate cyclase [Vibrio sinaloensis DSM 21326]
          Length = 324

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 7/173 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQINDNFGH 148
           +     + +LS  D L+G+LN  AFI SL           LS +  DID+FK+IND  GH
Sbjct: 134 YAREQDLKRLSETDELTGILNRRAFIHSLQEAFNSVERSNLSCLMVDIDHFKEINDQVGH 193

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+VI+ ++            VGRLGGEEF      +S  +A  +A  +R+ I ++  
Sbjct: 194 LSGDEVISHVAQLCQQQIRASDAVGRLGGEEFGVMLSHTSAIQAYDIAERIRRSIADTPC 253

Query: 209 NISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +    +I+ T+S GIAE       + T++ +AD+A+Y +K +GRN+V  + D
Sbjct: 254 QVDD-KTIYPTVSIGIAEADATTHDVKTLLVQADKAMYYSKHTGRNQVTLYHD 305


>gi|209964834|ref|YP_002297749.1| response regulator With diguanylate cyclase (GGDEF) domain,
           putative [Rhodospirillum centenum SW]
 gi|209958300|gb|ACI98936.1| response regulator With diguanylate cyclase (GGDEF) domain,
           putative [Rhodospirillum centenum SW]
          Length = 482

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 56/182 (30%), Positives = 86/182 (47%), Gaps = 16/182 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
            L  +Y +   L+  D L+GL N     + L           + ++ + FDID+FK +ND
Sbjct: 281 RLRSNYEQSLSLALTDSLTGLFNRRYLSAHLPRLLDRGGGNQKPVAALLFDIDHFKIVND 340

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+  ++ +          V RLGGEEF      +    A  +A  LR+ I 
Sbjct: 341 TWGHSAGDEVLREVAVRTSRNLRNFDLVTRLGGEEFVVVMPDTDLSSAMTVAERLRRRIA 400

Query: 205 NSQINISSGP---SIHITISAGIAERCH------KEPISTIIYRADQALYVAKKSGRNRV 255
           +    +++      I +TIS G+A           E   +++ RAD ALY  K+SGRNRV
Sbjct: 401 DEPFKVTATAGTGEITVTISIGVAVADGTDGDGRGESGDSLLRRADTALYRVKRSGRNRV 460

Query: 256 VC 257
           V 
Sbjct: 461 VA 462


>gi|307153753|ref|YP_003889137.1| PAS/PAC and GAF sensors-containing diguanylate cyclase [Cyanothece
            sp. PCC 7822]
 gi|306983981|gb|ADN15862.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp. PCC
            7822]
          Length = 1121

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 80/176 (45%), Gaps = 8/176 (4%)

Query: 94   FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNF 146
                  +   S  D L+GL N      SL             + ++  D+D+FKQ NDNF
Sbjct: 945  LQLRESLESQSIKDSLTGLYNRRYMEESLKREINLAQRKQHPVGLIMIDVDHFKQFNDNF 1004

Query: 147  GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
            GH  GD ++  + + L+    +     R GGEEF      +S  ++   A  +RK I+  
Sbjct: 1005 GHKAGDLILHEVGNFLMANVRSGDIACRYGGEEFLLILPEASLSDSQQRAEQIRKGIKQL 1064

Query: 207  QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                 +     +T+S G+A    H +   T+I  AD ALY AK  GR+RVV FS +
Sbjct: 1065 NFQQYNSAFTSLTVSIGVACFPAHGKQGETLIQSADMALYQAKNQGRDRVVVFSSV 1120


>gi|163843324|ref|YP_001627728.1| diguanylate cyclase [Brucella suis ATCC 23445]
 gi|163674047|gb|ABY38158.1| diguanylate cyclase (GGDEF) domain [Brucella suis ATCC 23445]
          Length = 264

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 117/231 (50%), Gaps = 14/231 (6%)

Query: 41  TVIFIANIFLFYIG---LTPFYGLEY--ILVENLSLVIISITISLLLGYISGS--ILKE- 92
             +   ++ LF +G   +T F+  E   ++  +LSL  + + I     +I      LKE 
Sbjct: 8   AALLTLSVVLFCVGATSITAFWSGETPGLMAISLSLGFLLVMIFPFSAFIFLRYDKLKEA 67

Query: 93  ---LFISYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNF 146
              L  S+  +   +RID ++G LN  A   ++    S  E  +++  D D+FK IND+F
Sbjct: 68  YAQLEKSHVELQARARIDHMTGPLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSF 127

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+
Sbjct: 128 GHGVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENT 187

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             + +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV 
Sbjct: 188 PFHTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVVF 238


>gi|242280298|ref|YP_002992427.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
 gi|242123192|gb|ACS80888.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
          Length = 377

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 64/192 (33%), Positives = 98/192 (51%), Gaps = 9/192 (4%)

Query: 73  IISITISLLLGYISG---SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-- 127
           II+   ++LLG ISG   SI   L  +  ++ +    D L+G  N  A   +L   N   
Sbjct: 186 IIATLGAILLGMISGVFGSIW--LARNRKQMIEFVTRDALTGAYNRRALDDALHQLNGDK 243

Query: 128 -KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
              + +  D+D FK +ND +GH  GD V+ +  ++   V  +    GR GGEEF      
Sbjct: 244 GSFAALLLDLDNFKSVNDTYGHDAGDLVLKYFVEETQKVLRSNDLFGRYGGEEFLILLYD 303

Query: 187 SSEQEAAILANDLRKIIENSQINI-SSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
           +  + AA LA  +RK +E++ + + SSG    +T+S G A      P    +  AD+A+Y
Sbjct: 304 TKLEHAAALAERIRKSVESNTVYLPSSGAHHSLTVSIGCAASDGSRPSEETVRMADKAMY 363

Query: 246 VAKKSGRNRVVC 257
            AK+SGRN+VV 
Sbjct: 364 KAKQSGRNQVVV 375


>gi|71734369|ref|YP_275090.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554922|gb|AAZ34133.1| GGDEF domain protein [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 604

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 92/205 (44%), Gaps = 20/205 (9%)

Query: 81  LLGYISGSILKE---------LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124
           L+G+I   I  E         L      +  ++  D L+GL N   F             
Sbjct: 378 LIGHIHSRIRAEDQLLDSQAALIQLNQHLEFIASEDKLTGLANRRRFDQFLEVEFKRARR 437

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAA 183
               LS++  D D+FK+ ND++GH  GD+ +  L+  +      P     R GGEE A  
Sbjct: 438 ERSLLSLILIDADHFKRYNDHYGHLAGDECLVALARVVEQCIRRPGDVAARYGGEEIAVV 497

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRA 240
             G+ E  A  +A ++ + I + QI   + P   +T+S G+A     +      ++I  A
Sbjct: 498 LPGTDESSARQVAENILQAIRDEQIEHPASPFGIVTVSLGVATFVGTDRQLDQRSLIELA 557

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D+ALY AK  GRNRV   S+I  +T
Sbjct: 558 DRALYAAKSQGRNRVNVASEIATST 582


>gi|313895135|ref|ZP_07828692.1| diguanylate cyclase (GGDEF) domain protein [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312976030|gb|EFR41488.1| diguanylate cyclase (GGDEF) domain protein [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 599

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 69/257 (26%), Positives = 116/257 (45%), Gaps = 19/257 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL 69
            +W CH+K      P   + + ++     +  + F   +F +   L PF G+  +    +
Sbjct: 316 WLWSCHKKGNMYCRPI-LIAFAALSILAVLDGLSFQFRVFAWNTYLLPF-GIYTVAFFIV 373

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSL 122
            L++        L  +S S+  ++     R+     +D L+   N + F       +   
Sbjct: 374 RLILDRAANERYLSDLSASLESQVDAVTKRME----VDPLTSCYNRNKFPSAVHDFMRIA 429

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
               E  S++ FDID+FK+IND +GH VGD V+   +  +         + R GGEEF  
Sbjct: 430 RDTGEPFSLIMFDIDHFKRINDTYGHDVGDVVLVNFARTIKAFLDRRHVLIRWGGEEFIL 489

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRA 240
             L     +A   AN +R+ +   +I+    PS  +T SAG+       ++    I+ RA
Sbjct: 490 LCLHYDGAQAQAFANVIREAVSEERIH----PSDQVTCSAGVGVWYGSDEDTADCIVKRA 545

Query: 241 DQALYVAKKSGRNRVVC 257
           D ALY +K++GRNRV C
Sbjct: 546 DTALYESKQNGRNRVTC 562


>gi|209524871|ref|ZP_03273417.1| diguanylate cyclase with PAS/PAC sensor [Arthrospira maxima CS-328]
 gi|209494750|gb|EDZ95059.1| diguanylate cyclase with PAS/PAC sensor [Arthrospira maxima CS-328]
          Length = 1380

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 68/166 (40%), Gaps = 8/166 (4%)

Query: 100  ISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
            +   S  D L+GL N                     + ++  DID FK  ND FGH  GD
Sbjct: 1213 LEHQSIRDPLTGLFNRRYLEEYLSQEIARAQRQKHPIGVIMMDIDNFKHFNDTFGHDAGD 1272

Query: 153  KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             V+  + + L           R GGEE      GSS +  ++ A  +R+ I +  +    
Sbjct: 1273 YVLQKVGELLKQKVREYDVACRYGGEEMTLILPGSSLENTSMRAEQIREAIASLVVASGG 1332

Query: 213  GPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVC 257
                 IT S G+A       I   +I  AD ALY AK  GRNRVV 
Sbjct: 1333 QHLGSITASFGVAAFPKHGSIGIDLIQAADAALYRAKADGRNRVVI 1378


>gi|205375401|ref|ZP_03228190.1| signal transduction protein [Bacillus coahuilensis m4-4]
          Length = 214

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 85/185 (45%), Gaps = 11/185 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           ++   + +       + QL+  D L+GL N   F+             + K +++F D D
Sbjct: 31  LTSRDVTQQVKYEEELKQLAFYDELTGLPNRRLFVDRAEHNLARCERNHLKFALLFLDGD 90

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK IND +GH VGD+ +   + +L  V      + R GG+EF         ++   +  
Sbjct: 91  GFKSINDQYGHDVGDEFLKECAARLKNVVRKEDTISRFGGDEFVILLTSVDNED--EIEE 148

Query: 198 DLRKIIENS-QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
              + +    +  I  G  I  T S GI+    +   I  ++ +AD+ALY+AK+ G+N+ 
Sbjct: 149 AATRYVSTMDKPLIIKGNEIQATFSVGISVFPKNGSTIEELMKQADEALYMAKERGKNQF 208

Query: 256 VCFSD 260
           V +++
Sbjct: 209 VFYNE 213


>gi|119493972|ref|ZP_01624532.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]
 gi|119452293|gb|EAW33489.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]
          Length = 328

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 11/183 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDY 138
           S ++ ++L  +  ++ Q++ +D L+ + N   F          L      LS++  D+D+
Sbjct: 144 SRTLTEQLETANQKLEQIAALDSLTQIANRRRFDQGLHSEWKRLSRERLPLSLILCDVDF 203

Query: 139 FKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           FK  ND +GH  GD  +  ++  +   V      V R GGEEFA     +  Q A  +A 
Sbjct: 204 FKAYNDTYGHRAGDLCLQQVAQTICEKVQRPADLVARYGGEEFAIILPNTQLQGAVKVAE 263

Query: 198 DLRKIIENSQINISSGP-SIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNR 254
           D+R  +   +I   +   S  +T+S G+A       +S   +I  AD+ALY AKK+GR+R
Sbjct: 264 DIRHSLHAIEIEHPNSRVSNFVTLSLGVASLIPNHYLSEDFLIGEADRALYEAKKAGRDR 323

Query: 255 VVC 257
           VV 
Sbjct: 324 VVF 326


>gi|71736110|ref|YP_274174.1| sensory box protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71556663|gb|AAZ35874.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 729

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 104/214 (48%), Gaps = 19/214 (8%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +G   +L  ++  + ++ T  LL+   +   + +L  +  ++  L+  D L+GL N +  
Sbjct: 245 HGAPLVLDISVEFITLNNTACLLM---NARDIGQLKTAQAQVQHLAYHDPLTGLPNCALL 301

Query: 119 ISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           +  L          N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         
Sbjct: 302 MDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 361

Query: 172 VGRLGGEEFAAAALGSS------EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
           V RLGG+EF     G         Q+  +LA++LR+++         G  + +T S GI 
Sbjct: 362 VARLGGDEFVVLICGLDGTRDEVIQQVRVLADNLRELLAEPMF--LDGHRLQVTPSIGIV 419

Query: 226 ERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
                    + ++ RAD ALY AK SGRN    F
Sbjct: 420 LIPDDGLAPADLLKRADIALYRAKDSGRNASQFF 453


>gi|238796548|ref|ZP_04640055.1| hypothetical protein ymoll0001_30130 [Yersinia mollaretii ATCC
           43969]
 gi|238719526|gb|EEQ11335.1| hypothetical protein ymoll0001_30130 [Yersinia mollaretii ATCC
           43969]
          Length = 414

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 59/186 (31%), Positives = 87/186 (46%), Gaps = 15/186 (8%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLS 130
           I L+L  I    + E       +   +  D L+ L N   F        +    Y    S
Sbjct: 233 IRLMLCVIH--DITEQKRLEEALEHAALRDPLTDLGNRRQFFPLVEHAHTQSQRYGHNFS 290

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D+FK IND  GH  GD+V+  L+  L  +      V R GGEEFA     ++ +
Sbjct: 291 LILLDVDHFKSINDQLGHNKGDEVLILLARTLESIIRESDIVFRWGGEEFAILLPLTNLE 350

Query: 191 EAAILANDLRKIIENS-QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            A  LA  +R+ I+   Q N+       +T+S G+A+    E   ++  R D+ALY AK 
Sbjct: 351 GALQLAESIRETIQMICQPNLP-----QLTVSIGVAQHQVGEDTDSLFKRMDEALYRAKA 405

Query: 250 SGRNRV 255
           SGRNRV
Sbjct: 406 SGRNRV 411


>gi|238782955|ref|ZP_04626983.1| hypothetical protein yberc0001_1070 [Yersinia bercovieri ATCC
           43970]
 gi|238716158|gb|EEQ08142.1| hypothetical protein yberc0001_1070 [Yersinia bercovieri ATCC
           43970]
          Length = 499

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 53/162 (32%), Positives = 79/162 (48%), Gaps = 7/162 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++   ++ D ++GL N     ++L       +  S++  DID+FK IND +GH +GD+VI
Sbjct: 341 KLKFEAQTDPMTGLYNRRGLATALEPIGQLGQHFSVIALDIDHFKLINDTYGHDIGDEVI 400

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L+ Q+         + R GGEEF     G++   A  +AN LR  +    I       
Sbjct: 401 KQLATQIRDSSRDTDILCRSGGEEFLMLLPGTTLDVATQVANRLRHNVAMMAIANIR--- 457

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             ITIS G+A    +      +  AD ALY AK+ GRNRV  
Sbjct: 458 -PITISLGVAYWSGEGMPEDALKLADAALYRAKQQGRNRVAV 498


>gi|261250949|ref|ZP_05943523.1| GGDEF family protein [Vibrio orientalis CIP 102891]
 gi|260937822|gb|EEX93810.1| GGDEF family protein [Vibrio orientalis CIP 102891]
          Length = 338

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 66/208 (31%), Positives = 104/208 (50%), Gaps = 11/208 (5%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSI------LKELFISYNRISQLSRIDCLSGLL 113
            LE ++     LV+ S  I     +++  +      +++L      + Q +  D L+ L 
Sbjct: 129 SLEEVMKVIRQLVVESREIRHSTRFLNSQLENATNEIQQLKSQLAEVQQDALFDSLTSLY 188

Query: 114 NHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           N  AF    ++L    +K+ ++  DID+FK  ND +GH  GD VI  ++ ++ +     +
Sbjct: 189 NRRAFDGDLNTLCRSEQKMCLILADIDHFKSFNDTYGHLFGDTVIKAIARRIQLSCRDGI 248

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERC 228
              R GGEEFA      S + A   A  LR+ IE   I    +S    +ITIS G+AE  
Sbjct: 249 HAYRFGGEEFALIVPNKSLRIARQYAESLRRAIEKLSIKDRRTSEQIGNITISLGVAELQ 308

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256
             E  +++I RAD+ LY AK+ GRNRV+
Sbjct: 309 PGETANSLIERADKLLYEAKELGRNRVM 336


>gi|256828941|ref|YP_003157669.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
 gi|256578117|gb|ACU89253.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
          Length = 495

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 11/204 (5%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
             ++    S+V++ +   L    + G I   L      ++  +  D L+G LN  AF+ S
Sbjct: 288 HAMVYGGASIVLVLVVAGLSTLLVRGQI--RLNRQSRELALAASTDMLTGALNRRAFMES 345

Query: 122 LGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
                     Y   LS +  D+D+FK +ND +GH  GD V++  +  +      P    R
Sbjct: 346 ASREFARVCRYGGHLSCIMIDLDHFKNVNDTYGHAAGDLVLSSSAHYIASRLREPDMFCR 405

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPI 233
            GGEEF     G+    AA +A +LR  +    +       + +T S G+AE   +   +
Sbjct: 406 YGGEEFVILLPGTDRNGAATVAEELRAGLAGLDLQRGD-EKLPLTASFGVAEIHAQCATL 464

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
            T++  ADQALY AK++GRNRV  
Sbjct: 465 DTLLSLADQALYEAKENGRNRVCL 488


>gi|219670664|ref|YP_002461099.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2]
 gi|219540924|gb|ACL22663.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2]
          Length = 407

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 71/265 (26%), Positives = 126/265 (47%), Gaps = 21/265 (7%)

Query: 8   FLSIWLCHEKN------LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL 61
           FL+IWL +         L+  +    +  + I  S     ++ +    ++++  +    L
Sbjct: 123 FLTIWLIYYGGCIAIGILKGGTISHKLTPWIISISHVFCGIVLVFRNIVWFLDPSARNAL 182

Query: 62  EYILVENLSLV----IISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           + + + N+ L     I+ + +++    + S  + +ELF S   +  L+  D L+G+ N  
Sbjct: 183 QPVFI-NIMLAFTEHIMDVIVAMAFLMLNSQRLAQELFESQKELEDLATTDPLTGISNRL 241

Query: 117 AFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
                           N   S++ FDID+FK++ND  GHP+GDK++  L+ ++       
Sbjct: 242 KLNELGNNEMIRSRRLNHPFSVIVFDIDHFKEVNDTCGHPIGDKLLVELTQKIKAEIRDI 301

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC- 228
            F GRLGG+EF      +S Q+   +A  LR++  +  +       +H++IS GIAE   
Sbjct: 302 DFFGRLGGDEFVLLFPETSIQKCHAVAERLRQVTNDVALQFED-IKVHVSISLGIAEMTL 360

Query: 229 HKEPISTIIYRADQALYVAKKSGRN 253
               I  ++ RAD+ LY AK SGRN
Sbjct: 361 EDSTIEDLLKRADENLYKAKHSGRN 385


>gi|323490114|ref|ZP_08095334.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Planococcus donghaensis MPA1U2]
 gi|323396162|gb|EGA88988.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Planococcus donghaensis MPA1U2]
          Length = 605

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 10/187 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             + E   +  +I+ L   D L+GL N       L           + +S+++ D+D+FK
Sbjct: 161 RDITERKETEAKINSLVYRDPLTGLPNRRMLSDQLALKIKQQSGKKQSMSLLYIDLDHFK 220

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+++  ++ +   +      + RLG +EF      +   +A   A  + 
Sbjct: 221 LINDTYGHYAGDQMLIEVAKRFQSIAHAEDTISRLGADEFILLLPNTDSFKATAHAQKIL 280

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++ +  +        + +T S GI+   +    + T++  AD AL  AK  G+N    F+
Sbjct: 281 ELFK--EPFRFQQEDLFVTPSIGISIFPNDGIDLDTLVKNADIALSQAKSQGKNNFQFFT 338

Query: 260 DIENNTC 266
           +  N   
Sbjct: 339 ESTNQAA 345


>gi|261250126|ref|ZP_05942702.1| GGDEF domain protein [Vibrio orientalis CIP 102891]
 gi|260939242|gb|EEX95228.1| GGDEF domain protein [Vibrio orientalis CIP 102891]
          Length = 474

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 11/185 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFF 134
           L  +S + ++E     +++ +L+  D L+G  N  +F             +   L+++  
Sbjct: 289 LVIMSITDIEERKNLEHKLRELAATDALTGAFNRRSFYEQTERAISTCSRWKAPLTVILL 348

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FKQ+ND +GH  GD+V+  L   +         VGRLGGEEF      +       
Sbjct: 349 DIDHFKQVNDQYGHAAGDEVLIALVKHIQQSTRNMDVVGRLGGEEFGLVLPNTDSVLGFE 408

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSG 251
           +A  LR+ +E  +I      ++ IT+S G+A   H +   P   ++ R D  LY AK  G
Sbjct: 409 IAERLRQEVEAMEIYYDI-QALKITVSLGMATLPHTQLSTPFDEVLARVDSYLYEAKHQG 467

Query: 252 RNRVV 256
           RN +V
Sbjct: 468 RNCIV 472


>gi|254457492|ref|ZP_05070920.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Campylobacterales bacterium GD 1]
 gi|207086284|gb|EDZ63568.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Campylobacterales bacterium GD 1]
          Length = 794

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 11/174 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I +L+  D L+GL N +     +             L+++F D+D+FK IND  GH VGD
Sbjct: 360 IEKLAYYDSLTGLANRTLLKDRMHKAIQYAKREQTNLAVMFLDLDHFKLINDTLGHSVGD 419

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINIS 211
            ++  +++ L +       + RLGG+EF        S  +A  +A+ ++  +++   +  
Sbjct: 420 DMLIHIAEILKIHIRESDTLSRLGGDEFVILLPSVKSIFDAQNIASKIQHTLQSK--HDI 477

Query: 212 SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
               ++IT S G++    H +    +I  AD A+Y AK SGRN    +S    N
Sbjct: 478 GDHQLYITSSIGVSLYPDHGDNSEELIRNADTAMYEAKNSGRNNYRIYSQSMGN 531


>gi|66046991|ref|YP_236832.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63257698|gb|AAY38794.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 358

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 111/220 (50%), Gaps = 10/220 (4%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
              + +    L P   L   + +  + + + +T  + +G++S  +  +L+   N + ++S
Sbjct: 125 ALGVLISLAALDPVVNLHGNMAQIYACLPVLVTYPIFIGWLSHQVTLKLWEHRNILRKVS 184

Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           R D L+GLLNH A+   L        +  ++  I   DID+FK IND +GH +GD V+  
Sbjct: 185 RTDSLTGLLNHGAWKDLLDLEYASSQNAYQECVIALIDIDHFKVINDTYGHLMGDTVLQS 244

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +S+ L+        +GR GG+EF      +S  +A  +   LR  I+     +     + 
Sbjct: 245 ISEALIENLRDSDLIGRCGGDEFCVILPDTSLLQAKEILERLRLAIDEMTYTLH--CDLK 302

Query: 218 ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
           +++S GIA    +    S+ ++ AD+ALY+AK +GRNRV 
Sbjct: 303 VSLSIGIAAYSPEMPDASSWLHEADKALYLAKSTGRNRVA 342


>gi|119773519|ref|YP_926259.1| sensory box protein [Shewanella amazonensis SB2B]
 gi|119766019|gb|ABL98589.1| sensory box protein [Shewanella amazonensis SB2B]
          Length = 1491

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 98/225 (43%), Gaps = 18/225 (8%)

Query: 58   FYGLEYILVENLSLVIISITISLLLGY--------ISGSILKELFISYNRISQLSRIDCL 109
            + G   + + +  +  + + +S++LG         +  S + E   S   + +L+  D L
Sbjct: 1002 WTGERELRIGSGQVCPVWLNVSVMLGLQGKVQHYVVVFSDITERKRSEADLRRLANYDVL 1061

Query: 110  SGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
            +GL N S F + L           EKL+++F D+D FK +ND+FGH +GD ++   + +L
Sbjct: 1062 TGLPNRSLFAARLNQAIHKATQNEEKLALMFLDLDRFKHVNDSFGHGMGDALLVEAAARL 1121

Query: 163  VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                     + R GG+EF     G+       LAN +   IE        G   +I+ S 
Sbjct: 1122 QSCIDPEYTLCRFGGDEFVVLIHGAEVDTLNHLANTILGQIET--PFKLFGREFYISTSI 1179

Query: 223  GIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            GI+           +I  AD A+Y AK+ GR     +S   N   
Sbjct: 1180 GISIWPDDARQPEALIKNADLAMYHAKEEGRGNFQYYSQERNAEA 1224


>gi|218244913|ref|YP_002370284.1| PAS/PAC sensor-containing diguanylate cyclase [Cyanothece sp. PCC
           8801]
 gi|218165391|gb|ACK64128.1| diguanylate cyclase with PAS/PAC sensor [Cyanothece sp. PCC 8801]
          Length = 668

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 98/210 (46%), Gaps = 19/210 (9%)

Query: 67  ENLSLVIISITISLLLG----YISGSILKELFIS------YNRISQLSRIDCLSGLLNHS 116
           E L L+ ++++   L      +++ ++ K++ I+         + + S  D L+GL N  
Sbjct: 453 ETLGLLYLNLSNVELFNPSQQHLAEAVSKQIAIAFANLKLRETLEEQSLRDPLTGLFNRR 512

Query: 117 AFISSLGS--------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
               S+           +  L ++  DID+FKQ NDNFGH  GD V+  +++ L      
Sbjct: 513 YLEISINRELNTIIQDQDYSLGLIMLDIDHFKQFNDNFGHEAGDLVLQTVANCLQNHIRQ 572

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
                R GGEEF      +S  +    A  +R+ I+  +I   S P   IT S G+A   
Sbjct: 573 SDIACRFGGEEFMIILPRASLNKTLERAEKIRESIKQLKIEYKSQPLDSITASFGVAAFP 632

Query: 229 H-KEPISTIIYRADQALYVAKKSGRNRVVC 257
                +  +   AD+ALY AKK GR+RVVC
Sbjct: 633 QNGTTLHELFIDADKALYQAKKQGRDRVVC 662


>gi|149374538|ref|ZP_01892312.1| response regulator receiver domain protein (CheY-like)
           [Marinobacter algicola DG893]
 gi|149361241|gb|EDM49691.1| response regulator receiver domain protein (CheY-like)
           [Marinobacter algicola DG893]
          Length = 636

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 11/187 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVF 133
           LL        ++L    N++ +LS  D L+GL N   F  +          +++ LS++ 
Sbjct: 437 LLEQRVQERTRDLESLNNQLRELSATDALTGLKNRGHFDRTFSSAVVKAYRFSQPLSLLL 496

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            DID+FK+ ND  GH VGD  +  +++ +   V        R GGEEF      +  + A
Sbjct: 497 LDIDHFKKFNDTHGHLVGDDCLQMVANCIREYVTRPQDLAARYGGEEFVVLLPDTPREGA 556

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKS 250
             +A  +R  IE +   +S    +H+T+S G+   C    +    I   AD+ALY AK  
Sbjct: 557 LRVAEKIRSRIEETGFRVSD-EVLHLTVSIGLCAVCPSQADATKDIFSWADEALYEAKGR 615

Query: 251 GRNRVVC 257
           GRN+VV 
Sbjct: 616 GRNQVVA 622


>gi|170723673|ref|YP_001751361.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Pseudomonas putida W619]
 gi|169761676|gb|ACA74992.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Pseudomonas putida W619]
          Length = 1276

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 15/192 (7%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            + + E   S  RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 825  TDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQQAERQKSWVVLMFLDLDRFK 884

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAIL 195
             IND+ GH  GD+++  ++ +L+        V R+GG+EF       + +E     A  +
Sbjct: 885  PINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQSRATREMALNRAIHV 944

Query: 196  ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            A ++   +   +  +  G    +T S GIA        +S ++  AD A+Y AK+ G+N 
Sbjct: 945  AENILASL--VRPFVLEGREFFVTASIGIALSPQDGGELSQLMKNADTAMYHAKERGKNN 1002

Query: 255  VVCFSDIENNTC 266
               +    N + 
Sbjct: 1003 FQFYQAEMNASA 1014


>gi|332531374|ref|ZP_08407280.1| diguanylate cyclase [Hylemonella gracilis ATCC 19624]
 gi|332039191|gb|EGI75611.1| diguanylate cyclase [Hylemonella gracilis ATCC 19624]
          Length = 270

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 63/211 (29%), Positives = 94/211 (44%), Gaps = 25/211 (11%)

Query: 66  VENLSLVIISITISLL-----LGYISGSILKE-------LFISYNRISQLSRIDCLSGLL 113
           +  LS  I S+T +LL     L  ++ S+ ++       L I+   + +L+ +D L+G+ 
Sbjct: 61  IRELSASIQSMTGALLRHETELETLNASLEQQVHERTEALSIANQELERLATVDGLTGVH 120

Query: 114 NHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N   F +        LG       ++  DID+FK IND  GH  GD+V+  L   L    
Sbjct: 121 NRRRFDARIKEAFQLLGRSERGFGLLLLDIDHFKSINDRHGHQAGDEVLRRLGQLLTQST 180

Query: 167 GTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
               FV R GGEEF           E   +A  +R  +  +           +T+S G++
Sbjct: 181 RVTDFVARYGGEEFVVLLPECMDPNEGWAVAEKIRAAVAATPFPAVG----QVTVSVGLS 236

Query: 226 ERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
                +     +I RADQALY AK  GRNRV
Sbjct: 237 LAHRDDASAEAVISRADQALYEAKAQGRNRV 267


>gi|304310878|ref|YP_003810476.1| hypothetical protein HDN1F_12400 [gamma proteobacterium HdN1]
 gi|301796611|emb|CBL44823.1| Hypothetical protein HDN1F_12400 [gamma proteobacterium HdN1]
          Length = 636

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 94/218 (43%), Gaps = 18/218 (8%)

Query: 64  ILVENLSLVIISITISLLLGYISGSIL--KELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           +    LS+  I      +  YI G +L   E   S  RI +L+  D L+ + N  +F   
Sbjct: 130 VRPATLSVTAIRDLAGQVTHYI-GILLDTAERRQSEQRIYRLAYYDSLTEIPNRVSFFER 188

Query: 122 LGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L             L+++F D+D FK IND+ GH  GD+++  ++ +L+        V R
Sbjct: 189 LDQALASAGSTGTSLAVLFLDLDRFKPINDSLGHGAGDQLLKAVARRLLYCIRENDLVAR 248

Query: 175 LGGEEFAAAA-----LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC- 228
           +GG+EFA           +E  A I A+ +      +   +  G  +  + S GIA    
Sbjct: 249 VGGDEFAILLTRLNTPEEAESTAIITASRILAQFATA--FMIEGRDVFSSTSIGIALFPR 306

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             +    ++  AD A+Y AKK+G+N    +    N   
Sbjct: 307 DGQLPDELVRNADMAMYAAKKAGKNAWHFYDHSMNEKA 344


>gi|254240505|ref|ZP_04933827.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126193883|gb|EAZ57946.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 864

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 10/187 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYF 139
           + + + +   ++ +I  LS  D L+GL N +     L            ++++  D+D F
Sbjct: 407 TAADITDEVEAHAKIQHLSLHDALTGLPNRNKLFQFLERLLAEKAGKSPVAVLMLDLDRF 466

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILAND 198
           K IND +GHP GD V+  ++++L         V RLGG+EF   +   S + E     + 
Sbjct: 467 KPINDQYGHPAGDAVLYAIAERLRASTRDQDMVARLGGDEFVVVSTHVSSKLEIEKFCSR 526

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L  +I         G S H+  S G+A    H      ++  AD A+Y AK +GRN    
Sbjct: 527 LIDVINREIAY--EGHSFHVGASIGVALAPEHGGDPRGLLRCADVAMYEAKAAGRNTWRF 584

Query: 258 FSDIENN 264
           + +  ++
Sbjct: 585 YLEAMDS 591


>gi|189426658|ref|YP_001953835.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter lovleyi SZ]
 gi|189422917|gb|ACD97315.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter lovleyi SZ]
          Length = 310

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 10/178 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           +  +L  S   + +LS  D L+GL N    + +L          + +++++  DID+FK+
Sbjct: 127 LQDDLKRSNELLLELSNTDHLTGLFNRRFLMEALDKEVQRARRKDGQVALLLMDIDHFKR 186

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD V+  ++  +     +     R GGEEF A    +S +EA  +A+ +R 
Sbjct: 187 VNDTHGHLQGDVVLQKVALHIQKELRSYDIAARYGGEEFVAVLPDTSLKEAFNVADRIRL 246

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
            ++      S      +T+S G+A       + I  ++  AD+ALY AK+ GRNRV+ 
Sbjct: 247 SVQGMHFAGSLANE-RVTVSLGVALFPSPCFDDIDGLLRAADEALYQAKERGRNRVII 303


>gi|187922417|ref|YP_001894059.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
 gi|187713611|gb|ACD14835.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
          Length = 516

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 15/211 (7%)

Query: 63  YILVENLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSA 117
           Y+   + + +I S+  +L +  I+ ++L     +    +   +  L+R D L+GL N   
Sbjct: 282 YVEWRHRAWIIGSLIAALDVTIIALAVLFSYQLRYRRAAEEELRVLARTDGLTGLNNRRT 341

Query: 118 FISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTP 169
           F                 LS++  D+D FK  ND +GH  GD  +  ++  +   V    
Sbjct: 342 FEEHAEDEWRRAQRNAWPLSMLLIDVDSFKGFNDLYGHSAGDDALTAVARCISQSVRRPG 401

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               R GGEEFA     + E  AA +A  +R  ++  Q+   +     +T+S GIA    
Sbjct: 402 DTAARYGGEEFAVLLPDTDETGAAFIAEKIRAAVQALQLRHVASSQHVLTVSIGIATTRG 461

Query: 230 K--EPISTIIYRADQALYVAKKSGRNRVVCF 258
           +       ++  AD ALY AK +GRNRV+ +
Sbjct: 462 EAFATSRALLNAADDALYEAKDAGRNRVLSY 492


>gi|16263692|ref|NP_436485.1| Diguanylate cyclase [Sinorhizobium meliloti 1021]
 gi|14524407|gb|AAK65897.1| Diguanylate cyclase [Sinorhizobium meliloti 1021]
          Length = 448

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 103/211 (48%), Gaps = 13/211 (6%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G+   +V   ++ I++   + LL       + EL  +  R+ +L++ D L+G+ N    +
Sbjct: 232 GIIATVVARRTITILA-QKTFLLELRDMRRVAELADANARLERLAKTDPLTGIANRRWMM 290

Query: 120 SSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MF 171
            +L       +       ++  DID FK +ND  GH  GD+ +  ++  +          
Sbjct: 291 ETLNRLWSSGAERRPGTAMLMCDIDDFKSLNDRLGHAEGDRCLVKVAGIIQSSVRRNRDH 350

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHK 230
           V R GGEEF     G++E+ A   A  +R  +E + +   +   + ++T+S G+A +   
Sbjct: 351 VARYGGEEFLVVLPGANEEAAVATAERIRASVEAASLPNPASRVAPYVTLSIGVAAQAPG 410

Query: 231 EPI---STIIYRADQALYVAKKSGRNRVVCF 258
           E I     +  +AD ALY+AK++GRNRVV +
Sbjct: 411 EEIVAPEKLQNQADAALYLAKQAGRNRVVLY 441


>gi|16760753|ref|NP_456370.1| hypothetical protein STY2005 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29141489|ref|NP_804831.1| hypothetical protein t1011 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213163492|ref|ZP_03349202.1| hypothetical protein Salmoneentericaenterica_27115 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213424175|ref|ZP_03357040.1| hypothetical protein SentesTyphi_00320 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213615719|ref|ZP_03371545.1| hypothetical protein SentesTyp_15079 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213648151|ref|ZP_03378204.1| hypothetical protein SentesTy_13209 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|25512044|pir||AC0731 conserved hypothetical protein STY2005 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503050|emb|CAD05549.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137116|gb|AAO68680.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 376

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 73/266 (27%), Positives = 129/266 (48%), Gaps = 28/266 (10%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY------GLEYILVE----- 67
           + S+  + F++++ + F+  ++ ++ +  +   Y  L           L  +L       
Sbjct: 110 MWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLWLTALLASVQLNQ 169

Query: 68  --NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDCLSGLLNH 115
             N+  +++ +T++ +L Y   I      E ++ Y        R+  ++  D L+G  N 
Sbjct: 170 YVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANR 229

Query: 116 SAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MF 171
            +  S LG      E  +++  D+DYFK  NDN+GH  GD  +A ++  +     TP   
Sbjct: 230 RSMESFLGDALRQTEPFALIMLDVDYFKNYNDNYGHQAGDACLAKVACVVKRSIRTPADL 289

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKII-ENSQINISSGPSIHITISAGIAERCHK 230
           V R GGEEF      SS  EAA++A  ++  + E +  +++S  S  +T+S GI      
Sbjct: 290 VARYGGEEFVVVLPSSSLNEAALVAKRIQTNLRETALPHVASAVSETVTVSMGITLSTAG 349

Query: 231 EPISTIIYRADQALYVAKKSGRNRVV 256
           + ++ II RAD+ALY AK+ GRNR V
Sbjct: 350 DTVTGIIARADEALYRAKQQGRNRWV 375


>gi|116749639|ref|YP_846326.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Syntrophobacter fumaroxidans MPOB]
 gi|116698703|gb|ABK17891.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Syntrophobacter fumaroxidans MPOB]
          Length = 844

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 11/186 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
              +     +  R+S  +  D L+GL N + F   L       G    + +I+F D+D F
Sbjct: 391 SRDITLRKEAEERLSYQASHDALTGLPNRARFHDRLTHALARAGRDRHEFAILFLDLDRF 450

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND  GH VGD ++  ++ +L+        + R GG+EF          ++AA+ A  
Sbjct: 451 KVINDTLGHTVGDFLLQGVTKRLLGGTRESDTLARWGGDEFIILLESIRGAEDAAVAARR 510

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  ++   +     G  + ++ S GI+      E +  ++  AD A+Y AK SG+N    
Sbjct: 511 ILDVLA--EPFSVQGHEVFVSGSIGISVYPRDGEDVQALLRCADIAMYRAKDSGKNDYQF 568

Query: 258 FSDIEN 263
           +    +
Sbjct: 569 YESTMS 574


>gi|170700998|ref|ZP_02891979.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
 gi|170134095|gb|EDT02442.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
          Length = 520

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 94/210 (44%), Gaps = 15/210 (7%)

Query: 63  YILVENLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSA 117
           Y    + ++ I S    L LG++  S+L     ++   +   +  L+R D L+GL N   
Sbjct: 298 YAAWYDRAIPIGSAMAVLALGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRM 357

Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
              +L     +       LS++F D+D+FK+ ND+ GH  GD  +A ++  +      P 
Sbjct: 358 LDVTLAREWRRAARSQHALSLLFVDVDHFKRYNDSQGHQAGDDALAAVARCIAGCLRRPA 417

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--R 227
            +  R GGEEF           A  +A  +R  I +  I   +G    +T S G+     
Sbjct: 418 DYAARYGGEEFVVVLPNVDTNGAVTIAESIRTGILDLGIRHDTGVCGRLTASIGVTTCYP 477

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              + I   +  AD ALY AK+ GRN+VV 
Sbjct: 478 ERDDSIQAALKLADDALYRAKECGRNQVVV 507


>gi|197118430|ref|YP_002138857.1| GAF domain-containing sensor diguanylate cyclase [Geobacter
           bemidjiensis Bem]
 gi|197087790|gb|ACH39061.1| sensor diguanylate cyclase, GAF domain-containing protein
           [Geobacter bemidjiensis Bem]
          Length = 704

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 82/176 (46%), Gaps = 9/176 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
            E+     R  QLS  D L+GL N     + L             L+++F D+D+FK  N
Sbjct: 492 TEVLEESERFEQLSVTDALTGLYNRRFLKNRLEEELNRSIRQGLNLTVIFIDLDFFKNYN 551

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD  +   ++ +         V R GGEEF A   G+S+ EA I+A  +R  I
Sbjct: 552 DLCGHLAGDDALRTTAEIIKASLRDMDIVARYGGEEFCAVLPGTSKVEAMIVAERIRSEI 611

Query: 204 ENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           E       S  P + +T S G+A         + +++ +D ALY AK  GRNR+V 
Sbjct: 612 EREIFPGESEIPQVRLTASLGVASFPEDGRTFTALVHASDVALYEAKAGGRNRIVA 667


>gi|330890981|gb|EGH23642.1| diguanylate cyclase [Pseudomonas syringae pv. mori str. 301020]
          Length = 686

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 87/185 (47%), Gaps = 11/185 (5%)

Query: 82  LGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSI 131
           L     S+ +E            Q + ID L+GL N +A+   L     K       L +
Sbjct: 501 LSARVASMEQEALGFRTHLEEQRQKALIDPLTGLPNRAAWGERLEQEMSKWQHEKNSLLV 560

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK+IND +GH  GDKV+  +++       +  F+ R GGEEF      +    
Sbjct: 561 CILDLDHFKRINDGYGHLAGDKVLKIVANVFRKRLRSDDFLARFGGEEFVMLLPATPPGT 620

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
                ++LR  +E+   +   G  + IT+S G+      E   T I RADQALY AK++G
Sbjct: 621 GLTQLDELRTAVESCPFHFK-GERVTITVSIGVTAFRTAERSDTAIKRADQALYKAKENG 679

Query: 252 RNRVV 256
           RNRV 
Sbjct: 680 RNRVQ 684


>gi|322616979|gb|EFY13887.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618218|gb|EFY15110.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625889|gb|EFY22708.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626341|gb|EFY23151.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632756|gb|EFY29501.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322639098|gb|EFY35791.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640414|gb|EFY37070.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647225|gb|EFY43724.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322655535|gb|EFY51843.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660313|gb|EFY56551.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662994|gb|EFY59201.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668179|gb|EFY64338.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674062|gb|EFY70156.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675586|gb|EFY71660.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683003|gb|EFY79019.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686697|gb|EFY82675.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195415|gb|EFZ80595.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198057|gb|EFZ83174.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204471|gb|EFZ89477.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207561|gb|EFZ92509.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211000|gb|EFZ95860.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217546|gb|EGA02265.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323226692|gb|EGA10889.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231568|gb|EGA15681.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236011|gb|EGA20090.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240581|gb|EGA24624.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245473|gb|EGA29473.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247591|gb|EGA31542.1| putative diguanylate cyclase YedQ [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253946|gb|EGA37770.1| putative diguanylate cyclase YedQ [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257769|gb|EGA41449.1| putative diguanylate cyclase YedQ [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262124|gb|EGA45687.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266247|gb|EGA49737.1| putative diguanylate cyclase YedQ [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270724|gb|EGA54163.1| putative diguanylate cyclase YedQ [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 570

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 11/203 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+ +  T  LL+ + +   ++K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 +  S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKTQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
            AD+ LY AK+SGRNR+ C SD 
Sbjct: 542 LADKRLYYAKQSGRNRI-CASDA 563


>gi|323524509|ref|YP_004226662.1| diguanylate cyclase [Burkholderia sp. CCGE1001]
 gi|323381511|gb|ADX53602.1| diguanylate cyclase [Burkholderia sp. CCGE1001]
          Length = 509

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 103/236 (43%), Gaps = 21/236 (8%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            + + +   +   +I++ +       G    L+  L L +I++ +      +    ++  
Sbjct: 267 MYPLILDVALSTRDIYVGWRRRAWIIG---SLIAALDLTLIALAV------LFAQQMRRR 317

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNF 146
             + + +  L+R D L+G+ N  AF             +   LS++  D+D FK  ND +
Sbjct: 318 LAAEDELRMLARTDGLTGVDNRRAFEQAVENEWRRAQRHGGPLSMLLIDVDSFKGFNDLY 377

Query: 147 GHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           GH  GD  +  ++  +   V        R GGEEFA     + E  A  +A  +R  +E 
Sbjct: 378 GHSAGDDALITVAHSIAGNVQRPGDTAARYGGEEFAVLLPDTDEAGATSIAEKIRAAVEA 437

Query: 206 SQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCF 258
             I   +     +T+S G+A     E  ST   ++  ADQALY AK +GRNRV  +
Sbjct: 438 LAIRHVASSHHVLTVSIGVATM-QGEAFSTSRGLVEAADQALYAAKDAGRNRVFSY 492


>gi|319789147|ref|YP_004150780.1| diguanylate cyclase [Thermovibrio ammonificans HB-1]
 gi|317113649|gb|ADU96139.1| diguanylate cyclase [Thermovibrio ammonificans HB-1]
          Length = 556

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 56/161 (34%), Positives = 78/161 (48%), Gaps = 10/161 (6%)

Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  D L+GL N       L             +++   DID+FK+IND +GH  GD V+ 
Sbjct: 398 AITDYLTGLFNRQYLFDYLKETLKKAEEEGFPVAVALIDIDFFKRINDTYGHLTGDCVLK 457

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            L+  L   F     V R GGEEF      S+ + A      +R+  E +         +
Sbjct: 458 ELAKILKGSFRESDCVARYGGEEFVVVMPHSNLENACKKMERVRQKTEETPF---CEDKL 514

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +T SAG+ E    E I +++ RAD+ LY AKKSGRNRVVC
Sbjct: 515 KVTFSAGVTEFKPGESIESLLERADKNLYEAKKSGRNRVVC 555


>gi|226943291|ref|YP_002798364.1| intracellular signalling protein [Azotobacter vinelandii DJ]
 gi|226718218|gb|ACO77389.1| intracellular signalling protein with diguanylate cyclase and
           phosphodiesterase activities [Azotobacter vinelandii DJ]
          Length = 586

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 10/187 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
            ++ E   S++RI QL+  D L+ L N           I+        L+++FFD+D FK
Sbjct: 142 QLMLEREESHDRIRQLAFYDPLTDLPNRGLLLIQADQAIARARRERTALNVLFFDLDRFK 201

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GHP GD ++  ++ +L     T   VGRL G+EF         ++       ++
Sbjct: 202 LINDTLGHPAGDLMLRTIAQRLRSELRTTDIVGRLAGDEFVVVLADCDLRQTTETIRRIQ 261

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           K +  S     +G ++  + S GI+      E + T++Y AD A+Y AK  GR +   FS
Sbjct: 262 KQLSASCQ--IAGATLAPSASIGISRFPDDGEDMETLLYYADLAMYQAKSKGRGQFSFFS 319

Query: 260 DIENNTC 266
           +  N   
Sbjct: 320 EEMNRQA 326


>gi|163743988|ref|ZP_02151357.1| diguanylate cyclase, putative [Phaeobacter gallaeciensis 2.10]
 gi|161382748|gb|EDQ07148.1| diguanylate cyclase, putative [Phaeobacter gallaeciensis 2.10]
          Length = 511

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 8/170 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFG 147
              + +   S  D L+G+ N   F+  L            +L ++ FD D FK  ND  G
Sbjct: 325 RLRDELHDQSTRDPLTGVYNRRYFLGELRNAVALADRRASQLGVLSFDADRFKTFNDTHG 384

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  + D L  +F       R+GGEEFA     + +++   +   LR  IE+  
Sbjct: 385 HDAGDMVLRAIGDTLKELFHNGEVCCRMGGEEFAVFLPDTDKEQTIEVGEALRAAIEDIT 444

Query: 208 INISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256
           +   SG    +TIS G+A       +   +++ AD+ALY AK +GRN VV
Sbjct: 445 LRYGSGTLPRVTISIGVASYPEDGLLPQDLMHAADRALYAAKDAGRNCVV 494


>gi|157376476|ref|YP_001475076.1| signal transduction protein [Shewanella sediminis HAW-EB3]
 gi|157318850|gb|ABV37948.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain-like protein [Shewanella sediminis
           HAW-EB3]
          Length = 1055

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 9/187 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           S + E  +    I  L+  D L+ L N  AF       +        +++++F D+D+FK
Sbjct: 605 SDITERKLFEEHIYNLAHHDSLTQLPNRVAFQLQMNTALERAKRSKTQMAVMFIDLDHFK 664

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GHPVGD ++  ++++          + R GG+EF      +    A  +     
Sbjct: 665 MINDTSGHPVGDLLLQQVAERFKRALRKEDVISRFGGDEFTVLLSNTRTDNATTVVARKL 724

Query: 201 KIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                    + S   + I+ S GI       + + +++  AD A+Y AK+ GRN    ++
Sbjct: 725 LACFYEPFKLPSS-EVVISASIGIGVFPDNGDSVDSLMMNADSAMYRAKEKGRNCFQFYT 783

Query: 260 DIENNTC 266
              N   
Sbjct: 784 KEMNQYA 790


>gi|89093784|ref|ZP_01166730.1| sensory box/GGDEF domain/EAL domain protein [Oceanospirillum sp.
           MED92]
 gi|89081914|gb|EAR61140.1| sensory box/GGDEF domain/EAL domain protein [Oceanospirillum sp.
           MED92]
          Length = 1014

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 12/212 (5%)

Query: 65  LVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAF----- 118
           L   LS+  +S T +    Y++  S + EL  +  ++ +L+  D L+ L N + F     
Sbjct: 550 LPIWLSISALSSTKTEQSSYVAVFSDISELKEAEQKLEKLAHYDNLTSLPNRTLFYDRIE 609

Query: 119 --ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
             ++      +K +++F DID FKQ+NDN GH  GD+++   + ++         V RLG
Sbjct: 610 SSLARAARNGKKTALLFVDIDRFKQVNDNHGHHTGDQLLVEAARRISAHIRLGDTVARLG 669

Query: 177 GEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPIS 234
           G+EF               +A  ++K + +          I  + S GIA          
Sbjct: 670 GDEFTVILSELDGLDPVQDIARRIQKSLRD--PFRLDDKEIFSSASIGIAMYPDDGRNAE 727

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           +++  AD A+Y  K+ GRN ++ F    N   
Sbjct: 728 SLLKHADVAMYHVKERGRNDILFFDKAINEQA 759


>gi|237799947|ref|ZP_04588408.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331022802|gb|EGI02859.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 747

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 51/189 (26%), Positives = 89/189 (47%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYF 139
            S L+E       ++ ++  D L+ L N +  ++ L    E L       +++F D+D F
Sbjct: 299 QSRLEERERISEELAYIAFHDELTSLYNRAYLMNELTQAFENLDPQYERATVLFLDLDGF 358

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
           K +ND+ GH  GD+++  ++++L     +   + R+GG+EFA   +G  + + A  +A  
Sbjct: 359 KVVNDSMGHLAGDQLLKRVANRLQNCVRSNDVLARIGGDEFAILLMGKDQPETAVRMAER 418

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           +   +  + I I  G  I I+ S GI   C        ++  AD A+Y AKK GR R   
Sbjct: 419 IVSQLHAA-IQI-EGQDIFISCSIGIVTACDSHSKPEDLLRDADVAMYSAKKQGRGRWSI 476

Query: 258 FSDIENNTC 266
           F+       
Sbjct: 477 FNASMREAA 485


>gi|119897835|ref|YP_933048.1| GGDEF/EAL/PAC/PAS-domain-containing protein [Azoarcus sp. BH72]
 gi|119670248|emb|CAL94161.1| GGDEF/EAL/PAC/PAS-domain containing protein [Azoarcus sp. BH72]
          Length = 828

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           S + ++  + +++ +L+  D L+GL N +         IS        ++++F D+D FK
Sbjct: 366 SDISQIKDAQSQLERLAHYDPLTGLPNRALLGDRLAHAISRARRAGTSVAVLFLDLDGFK 425

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDL 199
            +ND+ GHP GD+++  ++++L     +   V R GG+EFA         EA   +A  L
Sbjct: 426 NVNDSLGHPAGDRLLQIIAERLCGALRSEGSVSRFGGDEFAVVLEDVVRGEAVSEVAEHL 485

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             I E ++     G   H++ S GIA      +  +T+I  AD A+Y +K  GRN     
Sbjct: 486 --IAEIARPLDLDGHGAHVSASIGIALFPRDGDDATTLIKAADTAMYRSKALGRNTFSFH 543

Query: 259 SDIENNTC 266
            +      
Sbjct: 544 HEDMAQAA 551


>gi|89897543|ref|YP_521030.1| hypothetical protein DSY4797 [Desulfitobacterium hafniense Y51]
 gi|89336991|dbj|BAE86586.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 410

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 71/265 (26%), Positives = 126/265 (47%), Gaps = 21/265 (7%)

Query: 8   FLSIWLCHEKN------LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL 61
           FL+IWL +         L+  +    +  + I  S     ++ +    ++++  +    L
Sbjct: 126 FLTIWLIYYGGCIAIGILKGGTISHKLTPWIISISHVFCGIVLVFRNIVWFLDPSARNAL 185

Query: 62  EYILVENLSLV----IISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           + + + N+ L     I+ + +++    + S  + +ELF S   +  L+  D L+G+ N  
Sbjct: 186 QPVFI-NIMLAFTEHIMDVIVAMAFLMLNSQRLAQELFESQKELEDLATTDPLTGISNRL 244

Query: 117 AFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
                           N   S++ FDID+FK++ND  GHP+GDK++  L+ ++       
Sbjct: 245 KLNELGNNEMIRSRRLNHPFSVIVFDIDHFKEVNDTCGHPIGDKLLVELTQKIKAEIRDI 304

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC- 228
            F GRLGG+EF      +S Q+   +A  LR++  +  +       +H++IS GIAE   
Sbjct: 305 DFFGRLGGDEFVLLFPETSIQKCHAVAERLRQVTNDVALQFED-IKVHVSISLGIAEMTL 363

Query: 229 HKEPISTIIYRADQALYVAKKSGRN 253
               I  ++ RAD+ LY AK SGRN
Sbjct: 364 EDSTIEDLLKRADENLYKAKHSGRN 388


>gi|320354451|ref|YP_004195790.1| diguanylate cyclase [Desulfobulbus propionicus DSM 2032]
 gi|320122953|gb|ADW18499.1| diguanylate cyclase [Desulfobulbus propionicus DSM 2032]
          Length = 528

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 108/227 (47%), Gaps = 18/227 (7%)

Query: 50  LFYIGLTPFYGLEYILVE-NLSLVIISITISLLLGYISGS------ILKELFISYNRISQ 102
            F I + P   +  IL E NL L +I+++   +   +  S      + +EL      +  
Sbjct: 292 YFGIKINPVKSVAEILQEANLRLSLINLSYEEMNRELIKSKMELERLTEELSQKNRLLEN 351

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+ ID L+ + NH  F       I+     +  LS++  DID+FK+ ND +GH  GD ++
Sbjct: 352 LANIDGLTEVSNHRFFQHFLDSEINRAIRNDRPLSLLLADIDHFKKFNDTYGHQTGDFIL 411

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
                    V      + R GGEEFA     +S++EA I+A  LRK +E    +     S
Sbjct: 412 KEFCRITKEVIREYDLLARYGGEEFAYVLPETSQEEAQIVAEKLRKTVEEVTFD-DGRQS 470

Query: 216 IHITISAGIAERCHK-EPIS--TIIYRADQALYVAKKSGRNRVVCFS 259
            H+TIS G+A      E  S    I  AD+ALY AK  GRNR+  ++
Sbjct: 471 YHVTISIGVATARPGVEDFSKNDFIGAADEALYEAKNGGRNRIALYT 517


>gi|313682630|ref|YP_004060368.1| diguanylate cyclase with extracellular sensor [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155490|gb|ADR34168.1| diguanylate cyclase with extracellular sensor [Sulfuricurvum
           kujiense DSM 16994]
          Length = 461

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 56/193 (29%), Positives = 93/193 (48%), Gaps = 12/193 (6%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-- 129
           V+  I ++LL+  I      +L     ++ +LS  D L+G+ N       L    +K+  
Sbjct: 271 VLQYIALTLLIAAIFLWRYYDLKRYNAKLLELSITDKLTGIYNRLKIDERLTDEQKKVNR 330

Query: 130 ------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                 S++  DID+FK +ND +GH  GD V+  L++ +   F      GR GGEEF   
Sbjct: 331 YMNYRCSVMMIDIDFFKTVNDTYGHQYGDDVLKQLAELMRQNFRETDVFGRWGGEEFMVI 390

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              +S ++A   A   R+ +E +  ++       +T+S G+      E +  ++ R D A
Sbjct: 391 FPNTSVEDAYAAAEKFRRNVEENVRSMDK----PVTVSIGLGTFLTAESVDNMLSRIDAA 446

Query: 244 LYVAKKSGRNRVV 256
           LY AK+ GRNR+ 
Sbjct: 447 LYDAKEQGRNRIC 459


>gi|172036121|ref|YP_001802622.1| hypothetical protein cce_1206 [Cyanothece sp. ATCC 51142]
 gi|171697575|gb|ACB50556.1| hypothetical protein cce_1206 [Cyanothece sp. ATCC 51142]
          Length = 666

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 76/168 (45%), Gaps = 8/168 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
              +   S  D L+GL N     +S+          N+ L I+  D+D+FKQ ND FGH 
Sbjct: 493 RETLQYQSFRDPLTGLFNRRYLDASIDREFHRVVRENKPLGIIMVDVDHFKQFNDTFGHD 552

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  +   L           R GGEEF      +S + A   A  LR  I+   I 
Sbjct: 553 AGDIVLKRIGTFLQENVRQSDIACRFGGEEFTIILPHASLENAIERAEQLRLGIKQLHIQ 612

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
             +     IT+S G++    H E    ++  AD ALY AK+ GR+RV+
Sbjct: 613 YGNQSLGLITVSLGVSAFPNHGENPRELLQNADLALYQAKEQGRDRVI 660


>gi|76818658|ref|YP_335474.1| GGDEF domain-containing protein [Burkholderia pseudomallei 1710b]
 gi|76583131|gb|ABA52605.1| GGDEF domain protein [Burkholderia pseudomallei 1710b]
          Length = 484

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 13/196 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------- 125
           + ++   ++  Y++ S+ ++   +   +++L+  D L+GL N  A   +L          
Sbjct: 285 VFALIFVVMSAYLAHSLWRK-STAEAALARLAGTDSLTGLYNRRALDETLEREWRRAVGG 343

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAA 184
           +  L+I+F DID+FK+ ND +GH VGD+V+A +S  +          V R GGEEF    
Sbjct: 344 DRPLAILFVDIDHFKRYNDTYGHQVGDEVLATVSRCIAQQAARLGDVVARYGGEEFVVVL 403

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRA 240
             +    A ++A  +R  +    I         +T+S G+A           I+ I+  A
Sbjct: 404 PDTPRGGALVVAERVRLGVRMLGIEHEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAA 463

Query: 241 DQALYVAKKSGRNRVV 256
           DQALY AK  GRNRVV
Sbjct: 464 DQALYRAKADGRNRVV 479


>gi|56413215|ref|YP_150290.1| hypothetical protein SPA1005 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197362140|ref|YP_002141777.1| hypothetical protein SSPA0937 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56127472|gb|AAV76978.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093617|emb|CAR59086.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 376

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 127/266 (47%), Gaps = 28/266 (10%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY------GLEYILVE----- 67
           + S+  + F++++ + F+  ++ ++ +  +   Y  L           L  +L       
Sbjct: 110 MWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLWLTALLASVQLNQ 169

Query: 68  --NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDCLSGLLNH 115
             N+  +++ +T++ +L Y   I      E ++ Y        R+  ++  D L+G  N 
Sbjct: 170 YMNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANR 229

Query: 116 SAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MF 171
            +  S LG      E  +++  D+DYFK  ND++GH  GD  +A ++  +     TP   
Sbjct: 230 RSMESFLGGALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVACVVKRSIRTPADL 289

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHK 230
           V R GGEEF      SS  EAA++A  ++  +  + +  ++   S  +T+S GI      
Sbjct: 290 VARYGGEEFVVVLPSSSLNEAALVAQRIQTNLRETALPHAASAVSETVTVSMGITLSTAG 349

Query: 231 EPISTIIYRADQALYVAKKSGRNRVV 256
           + ++ II RAD+ALY AK+ GRNR V
Sbjct: 350 DTVTGIIARADEALYRAKQQGRNRWV 375


>gi|313201594|ref|YP_004040252.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. MP688]
 gi|312440910|gb|ADQ85016.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. MP688]
          Length = 1126

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 13/209 (6%)

Query: 67  ENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--- 122
           E LS+  ++     +  Y++  + + +  +S  R+  L+  D L+ L N +     +   
Sbjct: 650 EWLSISQVADAKGSVQNYVAVFTDITQRKLSEERLQFLANHDALTHLPNRALLQERIDQA 709

Query: 123 ----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                     ++++F D+D FK IND  GH  GD ++   + +L         V R GG+
Sbjct: 710 LFRAQRNKTAIAVLFIDLDRFKIINDTLGHQTGDMLLQEAAKRLKECLRETDTVARQGGD 769

Query: 179 EFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTI 236
           EF        + +    +A  +   +   Q  I  G  + I+ S GI+         +++
Sbjct: 770 EFVVLVEDCGDTDYLNTIARKIMATLA--QPFILVGRELFISASIGISVYPDDGLDTASL 827

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENNT 265
           +  AD A+Y AK+SG+N    ++  E NT
Sbjct: 828 LKHADAAMYRAKESGKNTFRFYA-AEANT 855


>gi|206560339|ref|YP_002231103.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
 gi|198036380|emb|CAR52276.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
          Length = 466

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 62/233 (26%), Positives = 105/233 (45%), Gaps = 22/233 (9%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI------LK 91
           ++A  IF    FL        YG+   L    S   I  +   L+  +S S+      L+
Sbjct: 240 WLAHAIFAGGFFLLS------YGVVQALQTTRSFSAI-YSQEDLMSRLSESMARTESALQ 292

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL  +  ++  ++  D ++G  N   FI+ +               ++  D+D FK IND
Sbjct: 293 ELRRTNQKLEYMAATDPMTGASNRRQFIAQVEREIVRAERDGTPFCLLALDLDNFKNIND 352

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH +GD+V+  +  Q +        + R+GGEEF A       + A + A  +R  I 
Sbjct: 353 AYGHQIGDEVLRGVVRQCLEAIRPAGALARVGGEEFMALLPEMPLEGARMTAERVRSSIS 412

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
           +S   +     + +T+S G+A+       + T++   D+ LY AK+ GRNRVV
Sbjct: 413 SSPFGL-DFKRVQVTVSVGVAQYGVDGSTVDTLLRVVDERLYQAKREGRNRVV 464


>gi|169830872|ref|YP_001716854.1| diguanylate cyclase [Candidatus Desulforudis audaxviator MP104C]
 gi|169637716|gb|ACA59222.1| diguanylate cyclase [Candidatus Desulforudis audaxviator MP104C]
          Length = 471

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 23/220 (10%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102
           ++ A   +  +G+     L+    +NL +    + ++L     +  ++       +R+ +
Sbjct: 263 LWTALGAVGLLGIVAPVSLDDNGSKNLQIYANFVAVALA----NAKLI-------HRLER 311

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            +  D L+G  N  A        +     Y   LS++F DID FK  ND FGH  GD V+
Sbjct: 312 EAETDFLTGFFNKRALRNLLIVELERTTRYGTPLSVIFLDIDDFKTYNDTFGHVAGDVVL 371

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              ++ +          GR GGEEF     G+ E+ A  +A  ++K IE         P 
Sbjct: 372 QKTAEIIRNSIRLVDIAGRYGGEEFVIILPGTKEEGAVAVAERIQKSIEAFPF-----PR 426

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +T S GIA   + + + +++ RADQA Y AK+ G+NR 
Sbjct: 427 RQVTTSLGIALAKNNDSVDSLLERADQACYQAKRQGKNRF 466


>gi|91794728|ref|YP_564379.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91716730|gb|ABE56656.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella denitrificans OS217]
          Length = 1479

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 60/228 (26%), Positives = 95/228 (41%), Gaps = 19/228 (8%)

Query: 56   TPFYGLEYILVENLSLVIISITISLLLGY--------ISGSILKELFISYNRISQLSRID 107
            T + G   +L  +       I IS++           +  S + E   +   +  L+  D
Sbjct: 996  TSWNGERELLRRDKRTFPAWINISMMKAENSLIKHYVLVFSDISERKQNELNLRYLANND 1055

Query: 108  CLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
             L+GL N + F   L          +EKL+++F D+D FK +ND++GH +GD ++   + 
Sbjct: 1056 VLTGLANRAMFTRRLTQIISFATLNDEKLALLFLDLDRFKHVNDSYGHSMGDALLVEAAR 1115

Query: 161  QLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +L         V R GG+EF      +        +A+ L K IE  Q     G    I+
Sbjct: 1116 RLQSCLTENHLVCRFGGDEFVILLRDAGDIDGINHVADSLLKTIE--QPFKLEGREFFIS 1173

Query: 220  ISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             S GI+          T+I  AD A+Y AK+ GR     +S   N   
Sbjct: 1174 TSIGISVWPDDSIDPETLIKNADLAMYHAKEEGRGNFQYYSSERNAEA 1221


>gi|62180438|ref|YP_216855.1| hypothetical protein SC1868 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224583636|ref|YP_002637434.1| hypothetical protein SPC_1855 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|62128071|gb|AAX65774.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224468163|gb|ACN45993.1| hypothetical protein SPC_1855 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 376

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 127/266 (47%), Gaps = 28/266 (10%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY------GLEYILVE----- 67
           + S+  + F++++ + F+  ++ ++ +  +   Y  L           L  +L       
Sbjct: 110 MWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLWLTALLASVRLNQ 169

Query: 68  --NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDCLSGLLNH 115
             N+  +++ +T++ +L Y   I      E ++ Y        R+  ++  D L+G  N 
Sbjct: 170 YVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANR 229

Query: 116 SAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MF 171
            +  S LG      E  +++  D+DYFK  ND++GH  GD  +A ++  +     TP   
Sbjct: 230 RSMESFLGDALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVACVVKRSIRTPADL 289

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHK 230
           V R GGEEF      SS  EAA++A  ++  +  + +  ++   S  +T+S GI      
Sbjct: 290 VARYGGEEFVVVLPSSSLNEAALVAQRIQTNLRETALPHAASAVSETVTVSMGITLSTAG 349

Query: 231 EPISTIIYRADQALYVAKKSGRNRVV 256
           + ++ II RAD+ALY AK+ GRNR V
Sbjct: 350 DTVTGIIARADEALYRAKQQGRNRWV 375


>gi|238790257|ref|ZP_04634031.1| Sensory box-containing diguanylate cyclase [Yersinia frederiksenii
           ATCC 33641]
 gi|238721607|gb|EEQ13273.1| Sensory box-containing diguanylate cyclase [Yersinia frederiksenii
           ATCC 33641]
          Length = 854

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 57/188 (30%), Positives = 85/188 (45%), Gaps = 11/188 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           + S +     +  RI  LS  D L+GL N           + +L +    L I+  D+D 
Sbjct: 411 TASDITREIEAQERIQHLSLHDALTGLPNRLRMKEFLENKLRNLAAAPHPLVILNVDLDK 470

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK +ND +GH  GD V+  +S++L         V R GG+EF     G +S +E   L  
Sbjct: 471 FKPVNDTYGHVTGDLVLHQVSERLRSCLRDQDLVARQGGDEFILIITGLASIKEIEQLCA 530

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            +   IE+    + +G  I+I  S GIA           ++  AD A+Y AK SGRN+  
Sbjct: 531 RVIARIES--PYVINGQDIYIGASIGIALAPQDSMHAEELLRFADIAMYEAKNSGRNQWS 588

Query: 257 CFSDIENN 264
            +S   N 
Sbjct: 589 FYSSEMNE 596


>gi|152981462|ref|YP_001353834.1| signal transduction protein [Janthinobacterium sp. Marseille]
 gi|151281539|gb|ABR89949.1| signal transduction protein containing a membrane domain, an EAL
           and a GGDEF domain [Janthinobacterium sp. Marseille]
          Length = 709

 Score =  194 bits (495), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 106/221 (47%), Gaps = 13/221 (5%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYI---SGSILKELFISYNRISQLSRIDCLS 110
           G++P +    ++V  L+++ I++  S+L   +   +G +++ L ++   +++ +  D L+
Sbjct: 210 GVSPGWLAIVVIVTTLAVLAIALLTSVLDARLDSQTGKLVRSLALANQELTKQALQDNLT 269

Query: 111 GLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            L N +     L            + +++F D+D FK IND+ GH +GD ++  ++ ++ 
Sbjct: 270 KLPNRTLLEDRLDQMVHKAVREQSRFALMFIDLDGFKAINDSLGHHIGDLLLIDVAKRIR 329

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                     RLGG+EF      +  ++AA +A+ L   + N   +I+   ++ I+ S G
Sbjct: 330 DNIRAQDTAARLGGDEFVMLIEVNEPEDAASVADKLCTTL-NQPFDIAQ-YNLGISASIG 387

Query: 224 IAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           IA           ++  AD A+Y  K +GRN    F    N
Sbjct: 388 IAVYPEDGSTRHDLLIHADAAMYHTKSTGRNGYHFFEASMN 428


>gi|307300872|ref|ZP_07580647.1| diguanylate cyclase [Sinorhizobium meliloti BL225C]
 gi|306904406|gb|EFN34991.1| diguanylate cyclase [Sinorhizobium meliloti BL225C]
          Length = 414

 Score =  194 bits (495), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 103/211 (48%), Gaps = 13/211 (6%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G+   +V   ++ I++   + LL       + EL  +  R+ +L++ D L+G+ N    +
Sbjct: 198 GIIATVVARRTITILA-QKTFLLELRDMRRVAELADANARLERLAKTDPLTGIANRRWMM 256

Query: 120 SSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MF 171
            +L       +       ++  DID FK +ND  GH  GD+ +  ++  +          
Sbjct: 257 ETLNRLWSSGAERRPGTAMLMCDIDDFKSLNDRLGHAEGDRCLVKVAGIIQSSVRRNRDH 316

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHK 230
           V R GGEEF     G++E+ A   A  +R  +E + +   +   + ++T+S G+A +   
Sbjct: 317 VARYGGEEFLVVLPGANEEAAVATAERIRASVEAASLPNPASRVAPYVTLSIGVAAQAPG 376

Query: 231 EPI---STIIYRADQALYVAKKSGRNRVVCF 258
           E I     +  +AD ALY+AK++GRNRVV +
Sbjct: 377 EEIVAPEKLQNQADAALYLAKQAGRNRVVLY 407


>gi|295675479|ref|YP_003604003.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1002]
 gi|295435322|gb|ADG14492.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1002]
          Length = 1055

 Score =  194 bits (495), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 85/187 (45%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + EL     ++   +  D L+ L N +     L         ++  +++VF D+D FK 
Sbjct: 607 DVTELIRYQEQLEYQANYDGLTRLPNRNLLRDRLEHALVVAQRHHTGVAVVFLDLDGFKN 666

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDLR 200
           +ND+ GH VGD+++  ++++L     T   V R GG+EF      + ++++ I     +R
Sbjct: 667 VNDSLGHSVGDRLLGVVAERLARCSRTSDTVARHGGDEFVIVMTDTVDEQSLITWMERVR 726

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I   +     G  +++  S G +      +   T++ +AD A+Y AK  GRN    + 
Sbjct: 727 ASIA--EPVWLDGTELYVGCSMGASLFPQDGDDAETLMKKADVAMYRAKDMGRNTFQFYQ 784

Query: 260 DIENNTC 266
              N + 
Sbjct: 785 PEMNASA 791


>gi|162148023|ref|YP_001602484.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786600|emb|CAP56182.1| putative signalling protein, GGDEF family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 471

 Score =  194 bits (495), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 8/166 (4%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ +LN           +         +S++F DID+FK IND FGH  GD V+  ++
Sbjct: 298 DPLTRVLNRRFLPSIISYELRVAHQTGRPMSVLFLDIDHFKHINDTFGHAAGDSVLQAIA 357

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         + R GGEEF      +  ++  I A  LR+ IEN+ I +  G    IT
Sbjct: 358 RVLEEASRLSDVIFRYGGEEFLVLMGDTDTEQMLIGAERLRQKIENTPIRLPDGNLHQIT 417

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           +S G A+         ++  AD ALY AK++GRNR+   +D  ++T
Sbjct: 418 VSIGAAQYAGHPDYEELLRAADAALYRAKRNGRNRIEV-ADAPHHT 462


>gi|134094323|ref|YP_001099398.1| putative sensory protein [Herminiimonas arsenicoxydans]
 gi|133738226|emb|CAL61271.1| conserved hypothetical protein; putative PAS/PAC, EAL, GGDEF
           domains [Herminiimonas arsenicoxydans]
          Length = 710

 Score =  194 bits (495), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 11/214 (5%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           + I +   +  + + T  LL    +   + E  +    I   +  D L+GL N +     
Sbjct: 245 DIIWISENARAVHTSTGELLFFEGTVEAITERKLHEAEIQFQATHDALTGLPNRTLLYDR 304

Query: 122 LG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           +         Y    +I F D+D FK IND+ GH VGD+++   + +L         V R
Sbjct: 305 MQQAVLHSARYGNLTAIAFLDLDQFKFINDSLGHQVGDELLKITAQRLTSCLRESDTVAR 364

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKII-ENSQINISSGPSIHITISAGIAE-RCHKEP 232
            GG+EF         +E+  + + +++++ E +Q  +++G    IT S G+         
Sbjct: 365 QGGDEFVLLLTSQPSEES--ITHTMQRVLHEVAQPWMANGLEFRITCSVGVTLCPDDGRD 422

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             T++  AD A+Y AK+ GRN    F+   N+T 
Sbjct: 423 AETLLKNADSAMYKAKELGRNNFQYFATEMNDTA 456


>gi|114320275|ref|YP_741958.1| diguanylate cyclase with PAS/PAC sensor [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226669|gb|ABI56468.1| diguanylate cyclase with PAS/PAC sensor [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 494

 Score =  194 bits (495), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 94/190 (49%), Gaps = 16/190 (8%)

Query: 83  GYISGSIL--KELFISY---NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           G ++G+++  +++ +S     +++ L+  D L+GL N +     LG        ++ +L+
Sbjct: 286 GRVTGAVIVFRDVSLSRSVTQKMAYLAHHDSLTGLPNRALLAERLGRALGAARRHDRQLA 345

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-E 189
           ++F D+D+FK+IND  GH +GD  +   + +L         V RLGG+EF          
Sbjct: 346 LLFLDLDHFKRINDTMGHDIGDHALRGTAYRLSDCVRETDTVSRLGGDEFVVLLEEIDSP 405

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAK 248
            +AA +A  +   I  + +++    ++ ++ S GI+    H     T+  RAD A+Y AK
Sbjct: 406 DDAAHIAEKVLAAI-TAPLHVGD-HTLQVSASIGISIFPQHGADAETLHQRADAAMYQAK 463

Query: 249 KSGRNRVVCF 258
             GR     F
Sbjct: 464 AKGRAGYQFF 473


>gi|302877361|ref|YP_003845925.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Gallionella capsiferriformans ES-2]
 gi|302580150|gb|ADL54161.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Gallionella capsiferriformans ES-2]
          Length = 1561

 Score =  194 bits (495), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 11/188 (5%)

Query: 81   LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132
            L  YI+  S +  +  +  R+  +   D L+ L N +          +    +    +++
Sbjct: 1106 LTNYIAIFSDITLIKAAQRRLEYMVAHDELTSLPNRNELRGRMAQTFARAQRHGGTFALM 1165

Query: 133  FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            F D+D FK +NDN GH  GD ++  ++++L +   T   V R+GG+EF       SE + 
Sbjct: 1166 FIDLDNFKNVNDNLGHDYGDVLLQQVAERLGLCVRTEDTVARIGGDEFNVLLDDVSETQI 1225

Query: 193  AILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
            A  A  +   +  S+  +     + ++ S GIA      E I T+   AD A+Y AK  G
Sbjct: 1226 ANTAQRILDHV--SKPYLIKEQQVFVSASIGIAVYPKDAEDIETLTKNADSAMYQAKDKG 1283

Query: 252  RNRVVCFS 259
            ++    F+
Sbjct: 1284 KDSYQFFT 1291


>gi|77460887|ref|YP_350394.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1]
 gi|77384890|gb|ABA76403.1| putative GGDEF domain membrane protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 501

 Score =  194 bits (495), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 12/188 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           L L ++    L+    +   ++QL+  D L+G+ N      SL           + LS++
Sbjct: 315 LWLTWLLARELRLRQRAERELAQLAATDALTGVANRRMLDQSLRHEWFRAQRSGKPLSLL 374

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQE 191
             D D+FK  ND  GH  GD+ +  L+  +      P   V R GGEEF+     +    
Sbjct: 375 MIDADHFKAFNDRHGHQAGDQALRELARVITTNVRRPADLVARYGGEEFSVILAETDSVG 434

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKK 249
           A  +A  +R  +E  Q++  +     +T+S GI+         +  +++ AD+ALY AK+
Sbjct: 435 AQQIAEHIRAAVE--QLSSVNEDQSPMTVSIGISTWTATSEISLEQLLFAADKALYQAKE 492

Query: 250 SGRNRVVC 257
            GRNRVV 
Sbjct: 493 GGRNRVVV 500


>gi|237797953|ref|ZP_04586414.1| diguanylate cyclase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020804|gb|EGI00861.1| diguanylate cyclase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 692

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 60/184 (32%), Positives = 87/184 (47%), Gaps = 11/184 (5%)

Query: 82  LGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           L     S+ +E      +     Q + ID L+GL N +A+   L             L +
Sbjct: 507 LSARVASMEQEALGFRSNLEEQRQKALIDPLTGLANRAAWGERLELEMTQWQQAKNSLLV 566

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK+IND +GH  GDKV+  +++ L        F+ R GGEEF      +    
Sbjct: 567 CILDLDHFKRINDGYGHLAGDKVLKIVANVLKKRLRPNDFMARFGGEEFVMLLPATPIGT 626

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              L ++LR  +E    +   G  + IT+S G+      E   T I RADQALY AK++G
Sbjct: 627 GLTLLDELRTAVEECPFHFK-GERVTITVSLGVTALRQGERSDTAIKRADQALYKAKENG 685

Query: 252 RNRV 255
           RNRV
Sbjct: 686 RNRV 689


>gi|152988008|ref|YP_001350574.1| motility regulator [Pseudomonas aeruginosa PA7]
 gi|150963166|gb|ABR85191.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 1410

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 15/192 (7%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            S + E   S  RI +L+  D L+ L N + F   L           + + ++F D+D FK
Sbjct: 957  SDISERKASERRIHRLAYYDALTHLPNRTLFQDRLHTALQQAERNGQWVVLMFLDLDRFK 1016

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAIL 195
             IND+ GH  GD+++  ++ +L         V R+GG+EF        ++E     A  +
Sbjct: 1017 PINDSLGHAAGDRMLQEVATRLSACVSQDDTVARMGGDEFTLLLPSQGDREIALKRAIQV 1076

Query: 196  ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            A  +   +   +     G    +T S G+A        +S ++  AD A+Y AK+ G+N 
Sbjct: 1077 AELILGRLA--RPFTLEGREFFVTASIGVALSPQDGAELSLLMKNADTAMYHAKEMGKNN 1134

Query: 255  VVCFSDIENNTC 266
               +    N   
Sbjct: 1135 FQFYQAEMNARA 1146


>gi|89092170|ref|ZP_01165125.1| Signaling protein with a sensor domain, CHASE, GGDEF and EAL
           domains [Oceanospirillum sp. MED92]
 gi|89083905|gb|EAR63122.1| Signaling protein with a sensor domain, CHASE, GGDEF and EAL
           domains [Oceanospirillum sp. MED92]
          Length = 731

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 113/239 (47%), Gaps = 14/239 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL---LLGYISGSIL 90
            FS    +V  I     + +      G +    E +   +++  +SL   +  Y+  +  
Sbjct: 233 VFSPGSVSVDVILPYGRWQLAANASQGWQVSTKEVIYYWLVAFLVSLATGMAAYLIATNY 292

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           +E   +    +  +  D L+GL N   F   L         +    ++ F D+DYFK++N
Sbjct: 293 REKLQAIETATYRANYDVLTGLSNRYHFSQQLQSLIYEHQRHGHMFALFFIDLDYFKEVN 352

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKI 202
           DN+GHP GD+++   + ++V +  +   + RL G+EF        S  +A +LA  L+  
Sbjct: 353 DNWGHPAGDELLRLFAHRMVSIVRSDDLIARLAGDEFVIVLKDLESATQAELLAEKLQ-- 410

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +E  +  + +G  + +T S GIA        +  ++  AD+A+Y AK++G+NR+  F+D
Sbjct: 411 LELGEPYLINGQYLSVTHSLGIAMYPADGGSMELLLQNADRAMYEAKRAGKNRIFFFND 469


>gi|170701267|ref|ZP_02892234.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria IOP40-10]
 gi|170133826|gb|EDT02187.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria IOP40-10]
          Length = 859

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
             + E  +   RI  L+  D L+GL N +         +S      + ++++  D+D FK
Sbjct: 250 QDITERKMQQGRIEYLANHDALTGLPNRNLLSDRMEQAMSQARRTGQLVAVMVLDLDRFK 309

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND+FGH VGD ++  ++ +L         V RLGG+EF    +  +++ +A ++A  +
Sbjct: 310 HINDSFGHSVGDGLLRVVAARLKRSVRDGDTVARLGGDEFVVMLVNLATQADADVIARKI 369

Query: 200 RKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                  +        +H+T S G++          T++  AD ALY AK+ GRN    +
Sbjct: 370 LDTF--IEPFTLDKHDLHVTTSVGVSLCPTDGANAETLLKTADAALYAAKEHGRNCYRFY 427

Query: 259 S 259
           +
Sbjct: 428 T 428


>gi|88800236|ref|ZP_01115804.1| hypothetical protein MED297_14102 [Reinekea sp. MED297]
 gi|88777082|gb|EAR08289.1| hypothetical protein MED297_14102 [Reinekea sp. MED297]
          Length = 606

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 74/263 (28%), Positives = 115/263 (43%), Gaps = 32/263 (12%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL-----VIISITIS 79
           H    +FS   S+    +  + +I         FY  EY L+  L +      +  +T  
Sbjct: 341 HEMAFFFS--RSVIPLIIAMLNDIVAASTPDYNFYFAEYALILFLFIHTQRQAVQFVTAL 398

Query: 80  LLLGYISGSILKE--------------LFISYNRISQLSRIDCLSGLLNH-------SAF 118
            +  ++S ++ +E              L   + R+  LS+ D L+GL N         A 
Sbjct: 399 RVAEHLSNNLQREVELKTSELSLRNRELEAKHQRVKLLSQTDHLTGLYNRQSLDNRTKAL 458

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGG 177
                  +  LS++  DID+FK IND FGH VGD+ +  ++  L  +       + R GG
Sbjct: 459 FEQAEQSDSHLSLIMMDIDHFKPINDRFGHQVGDECLVHVASFLRGLNLRHKDLIARFGG 518

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPIST 235
           EEF      +S + A  L  D+   +    ++  S   I +T S GIAER          
Sbjct: 519 EEFTIVLPDTSIEHAQHLIEDVCTRLSKETVS-GSHYEIQLTASFGIAERVISQAPSYEE 577

Query: 236 IIYRADQALYVAKKSGRNRVVCF 258
           +I +ADQALY AK++GRNRV  +
Sbjct: 578 LIQKADQALYQAKQNGRNRVEVY 600


>gi|221212627|ref|ZP_03585604.1| WspR [Burkholderia multivorans CGD1]
 gi|221167726|gb|EEE00196.1| WspR [Burkholderia multivorans CGD1]
          Length = 345

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 10/177 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+GL N       L +   +       LS++  D+D+FK  N
Sbjct: 161 QQLLEANLELRRLMHSDGLTGLSNRRYLDEYLAAEWRRCTRERAELSLLMIDVDHFKLYN 220

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD V+  ++  +      +     R GGEEFA    G+S   A +L   +R  
Sbjct: 221 DTYGHVSGDHVLRQVAATIAQCLRPSGDLAARFGGEEFAVVMPGTSAGAARLLGEKIRLA 280

Query: 203 IENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++  ++      + H+T+S G A        P + +I  AD+ALY AK  GRNRV  
Sbjct: 281 VDALRLEHGQSTAGHVTVSIGGASIVPAPGLPTTALIEAADRALYRAKHDGRNRVEV 337


>gi|153010998|ref|YP_001372212.1| response regulator PleD [Ochrobactrum anthropi ATCC 49188]
 gi|151562886|gb|ABS16383.1| response regulator receiver modulated diguanylate cyclase
           [Ochrobactrum anthropi ATCC 49188]
          Length = 461

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 83/173 (47%), Gaps = 9/173 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDN 145
           L  S NR   ++  D L+GL N     +               LS++  D D+FK+IND 
Sbjct: 285 LRQSLNRTITMAVTDSLTGLHNRRYLDTHMPVLLTRAMGRERPLSVIMLDFDHFKRINDQ 344

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD V+   + +L         + R GGEEF      S  + A  +A  +R  + +
Sbjct: 345 YGHDAGDDVLREFATRLRKNIRGMDLMCRYGGEEFVVVLPDSDVEAAKAVAERIRIAVSD 404

Query: 206 SQINISSG-PSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +   +++G   +++TIS G+A  R   +    +  R D ALY AKK GRNR+V
Sbjct: 405 TPFAVANGKHKVNLTISMGVAGLRLMGDSADALFSRTDAALYQAKKGGRNRIV 457


>gi|148360135|ref|YP_001251342.1| sensor histidine kinase [Legionella pneumophila str. Corby]
 gi|148281908|gb|ABQ55996.1| sensor histidine kinase [Legionella pneumophila str. Corby]
          Length = 565

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 85/205 (41%), Gaps = 14/205 (6%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           E I  EN   ++ S+    +   IS  +L+E       +   S  D LSGL N       
Sbjct: 364 EQINKENNQEILASMMAEQIALGISNIMLRET------LRNQSLRDVLSGLYNRRYLNEV 417

Query: 122 LGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L     +       L+++  DID+FKQ ND FGH  GD VI   ++ L  V        R
Sbjct: 418 LDRELNRCARKSLSLAVLMLDIDHFKQFNDKFGHEAGDMVIQAFANVLRQVTRKEDIACR 477

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
            GGEEF         + A   A  +   +    +         ITIS G+     H   +
Sbjct: 478 YGGEEFILIIPEIDLEAALQRAQSIHDAVSRIHLRYGGNALTQITISIGLTMYPAHGNDM 537

Query: 234 STIIYRADQALYVAKKSGRNRVVCF 258
             +I  AD ALY AK SGRN+ V +
Sbjct: 538 QDLITAADNALYEAKNSGRNKTVLY 562


>gi|119896980|ref|YP_932193.1| GGEF/EAL/PAS/PAC-domain-containing protein [Azoarcus sp. BH72]
 gi|119669393|emb|CAL93306.1| GGEF/EAL/PAS/PAC-domain containing protein [Azoarcus sp. BH72]
          Length = 818

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 89/181 (49%), Gaps = 10/181 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           S +  +  +  R+ +L+  D L+ L N           +  +    E L+++F DID FK
Sbjct: 375 SDISRMKETEARLQRLAHYDALTDLPNRVLLNLRLAHGVERVQRSGEMLAVLFLDIDRFK 434

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
            +ND+ GHPVGD+++  ++ +L         + RLGG+EF        S  + A  A ++
Sbjct: 435 NVNDSLGHPVGDELLIEIARRLRSRIRAEDTLARLGGDEFVILLDRIRSANDVADFAQEI 494

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             ++ N    ++SG  + +  S GI+      +  + +I  AD ALY AK++GRN    +
Sbjct: 495 IDLL-NQSFQLASGQEVFVGASIGISLYPLDTDDATQLISNADAALYQAKEAGRNVYRFY 553

Query: 259 S 259
           +
Sbjct: 554 T 554


>gi|34496603|ref|NP_900818.1| hypothetical protein CV_1148 [Chromobacterium violaceum ATCC 12472]
 gi|34102457|gb|AAQ58823.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 795

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 104/207 (50%), Gaps = 13/207 (6%)

Query: 69  LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           LS+  +     LL  Y++  S + +   +  R+  L+  D L+ L N S   +SL     
Sbjct: 327 LSISALRDEDGLLSNYVAVFSDITQRKEAEERLQFLANHDPLTRLPNRSRLTASLDEALT 386

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                + +L+++F D+D FK IND+FGH VGD+++  ++ +L  V G    + RLGG+EF
Sbjct: 387 RMDGEDGRLAVMFIDLDRFKLINDSFGHQVGDQLLCEIAIRLSRVVGERGMLARLGGDEF 446

Query: 181 AAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIY 238
                G  S  + A +A+D+   +   +        + IT S GI+   H      T++ 
Sbjct: 447 TLLMSGFDSHHQLADMASDILAAL--GKPLCLEAHEVFITGSIGISVFPHDGRDARTLLK 504

Query: 239 RADQALYVAKKSGRNRVVCFSDIENNT 265
            AD A+Y AK++G+N    F DI  NT
Sbjct: 505 NADVAMYRAKEAGKNTYQFF-DIGMNT 530


>gi|332530469|ref|ZP_08406410.1| sensory box/GGDEF family protein [Hylemonella gracilis ATCC 19624]
 gi|332040038|gb|EGI76423.1| sensory box/GGDEF family protein [Hylemonella gracilis ATCC 19624]
          Length = 702

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
             + E       +   +  D L+GL N           I+        L +VF D+D+FK
Sbjct: 241 QDISERRRYQQELEHQANHDTLTGLPNRMLLSDRVEQGIARAERLGYHLVVVFIDLDHFK 300

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND+ GH  GD+++  ++ +L         V RLGG+EF      +    ++ + + L+
Sbjct: 301 FINDSLGHDAGDELLKEVALRLRRCVRASDTVARLGGDEFVLLL--ADHFRSSTVIDQLQ 358

Query: 201 KII-ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +++ E SQ    SG    +  S G+A      E   ++   AD A+Y AK +GRN    F
Sbjct: 359 RVLSEISQPVQLSGREFQVGASLGVAMYPGDGEDALSLFKHADAAMYAAKGNGRNNFQFF 418

Query: 259 SDIENNTC 266
           +   N+  
Sbjct: 419 TRELNHVA 426


>gi|284054204|ref|ZP_06384414.1| diguanylate cyclase with PAS/PAC and GAF sensors [Arthrospira
           platensis str. Paraca]
          Length = 607

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 68/166 (40%), Gaps = 8/166 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +   S  D L+GL N                     + ++  DID FK  ND FGH  GD
Sbjct: 440 LEHQSIRDPLTGLFNRRYLEEYLSQEIARAQRQKHPIGVIMMDIDNFKHFNDTFGHDAGD 499

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  + + L           R GGEE      GSS +  ++ A  +R+ I +  +    
Sbjct: 500 YVLQKVGELLKQKVREYDVACRYGGEEMTLILPGSSLENTSMRAEQIREAIASLVVASGG 559

Query: 213 GPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVC 257
                IT S G+A       I   +I  AD ALY AK  GRNRVV 
Sbjct: 560 QHLGSITASFGVAAFPKHGSIGIDLIQAADAALYRAKADGRNRVVI 605


>gi|253997490|ref|YP_003049554.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera mobilis JLW8]
 gi|253984169|gb|ACT49027.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera mobilis JLW8]
          Length = 1250

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 93/218 (42%), Gaps = 26/218 (11%)

Query: 70  SLVIISITISLLLG-------YIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           SL  +  TI+  +G       YIS  + + +   + ++ + L+  D L+ L N    +  
Sbjct: 781 SLYWVDTTIAPFIGDDGKPQSYISIRTDITQRKAAEDKSNYLALYDPLTNLPNRRLLLDR 840

Query: 122 LG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L              +++F D+D+FK +ND  GH VGD ++  +++ L         V R
Sbjct: 841 LTHALASAMRTGRGGALLFLDLDHFKTLNDTLGHDVGDLLLQQVAECLTACVREGDTVAR 900

Query: 175 LGGEEFAAAALGSSEQEAAILAND-------LRKIIENSQINISSGPSIHITISAGIAER 227
           LGG+EF     G SEQE    A         L K IE  Q     G   HIT S GI   
Sbjct: 901 LGGDEFVVILEGLSEQEVEAAAQAEVVGEKILNKFIEPYQF---KGYEYHITSSVGITLF 957

Query: 228 CHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
                    ++ +AD A+Y AKK GRN +  F      
Sbjct: 958 GKNNLKSDELLKQADIAMYQAKKLGRNALSFFDPKMQE 995


>gi|253999561|ref|YP_003051624.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. SIP3-4]
 gi|253986240|gb|ACT51097.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. SIP3-4]
          Length = 1126

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 13/209 (6%)

Query: 67  ENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--- 122
           E LS+  ++     +  Y++  + + +  +S  R+  L+  D L+ L N +     +   
Sbjct: 650 EWLSISQVADAKGSVQNYVAVFTDITQRKLSEERLQFLANHDALTHLPNRALLQERIDQA 709

Query: 123 ----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                     ++++F D+D FK IND  GH  GD ++   + +L         V R GG+
Sbjct: 710 LFRAQRNKTAIAVLFIDLDRFKIINDTLGHQTGDMLLQEAAKRLKECLRETDTVARQGGD 769

Query: 179 EFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTI 236
           EF        + +    +A  +   +   Q  I  G  + I+ S GI+         +++
Sbjct: 770 EFVVLVEDCGDTDYLNTIARKIMATLA--QPFILVGRELFISASIGISVYPDDGLDTASL 827

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENNT 265
           +  AD A+Y AK+SG+N    ++  E NT
Sbjct: 828 LKHADAAMYRAKESGKNTFRFYA-AEANT 855


>gi|209542639|ref|YP_002274868.1| diguanylate cyclase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530316|gb|ACI50253.1| diguanylate cyclase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 472

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 8/166 (4%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ +LN           +         +S++F DID+FK IND FGH  GD V+  ++
Sbjct: 299 DPLTRVLNRRFLPSIISYELRVAHQTGRPMSVLFLDIDHFKHINDTFGHAAGDSVLQAIA 358

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         + R GGEEF      +  ++  I A  LR+ IEN+ I +  G    IT
Sbjct: 359 RVLEEASRLSDVIFRYGGEEFLVLMGDTDTEQMLIGAERLRQKIENTPIRLPDGNLHQIT 418

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           +S G A+         ++  AD ALY AK++GRNR+   +D  ++T
Sbjct: 419 VSIGAAQYAGHPDYEELLRAADAALYRAKRNGRNRIEV-ADAPHHT 463


>gi|134290975|ref|YP_001114744.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
 gi|134134164|gb|ABO58489.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
          Length = 328

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 79/172 (45%), Gaps = 10/172 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+R D L+GL N  AF   L             LS++F DID FK  ND++GH  GD
Sbjct: 147 LQRLARRDALTGLENRGAFDEMLSQEWANTLRTGRHLSLLFIDIDRFKSYNDHYGHQSGD 206

Query: 153 KVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           + +  ++  +          V R GGEEF      +  + AA +A  +R+ I +  +   
Sbjct: 207 QALKAVAHCISACVSRPSDHVARYGGEEFVVILPETDVEGAAAVAEKIRQAIHDMHVAHV 266

Query: 212 SGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                ++T S G++   H        +I  AD A+Y AK  GRNRV    + 
Sbjct: 267 KSGFGYVTASIGVSSSAHPAVHDGDALIRVADLAVYEAKSRGRNRVCIAGEA 318


>gi|115359701|ref|YP_776839.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           AMMD]
 gi|115284989|gb|ABI90505.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           AMMD]
          Length = 324

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 57/203 (28%), Positives = 100/203 (49%), Gaps = 11/203 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           L     +  + +TIS +       + +E   +  ++ + +  D L+G+ N   F + L  
Sbjct: 125 LTRGREVEAVCVTISDVTH--VSVMQREREEAVAKLREHANRDGLTGIANRRFFEARLGD 182

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   LS++ FD+D+FK IND FGH  GD V+   + ++  +  +    GR GG
Sbjct: 183 EFARWQRYGGDLSMLLFDLDHFKTINDRFGHAAGDAVLRETARRVASIVRSQDTFGRFGG 242

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STI 236
           EEFA     ++  EA  +A+ +R  I ++ ++ + G S+ +T S G A           +
Sbjct: 243 EEFALLLPCTNLDEAMRVADKVRDAIGSTPVD-AEGVSVPVTASVGGACATVGATAPDVL 301

Query: 237 IYRADQALYVAKKSGRNRVVCFS 259
           +  AD ALY AK+ GR+R + ++
Sbjct: 302 VNEADTALYRAKRLGRDRSIAYT 324


>gi|53804908|ref|YP_113463.1| sensory box protein [Methylococcus capsulatus str. Bath]
 gi|53758669|gb|AAU92960.1| sensory box protein [Methylococcus capsulatus str. Bath]
          Length = 810

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 79/184 (42%), Gaps = 11/184 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
           G  + E+     RI +L+  D L+ L N +     +            +  ++  D+D F
Sbjct: 367 GRDITEVDEYRRRIQRLAFFDPLTDLPNRALLNDRIRQCLTDAAARGSQFGLMLLDLDRF 426

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K++ND  GH  GD+++   + +L         V RLGG+EF+          +   +A  
Sbjct: 427 KEVNDTLGHSAGDRLLCEAARRLNACVRGYDTVARLGGDEFSILLPVVRDRGDLRAIAGR 486

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           + +     +  I  G  + +++S GI      +     +  +AD A+Y AK+ GRN    
Sbjct: 487 ILEAF--GEAFIIEGKELFVSVSIGIVLHMEGQCDADRLFKQADLAMYHAKRQGRNNFQF 544

Query: 258 FSDI 261
           +++ 
Sbjct: 545 YAEE 548


>gi|295700166|ref|YP_003608059.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
 gi|295439379|gb|ADG18548.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
          Length = 531

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 15/239 (6%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR 99
            T + +A        L P+    ++     +L I    + +++ ++    L++   +   
Sbjct: 286 GTPLIVAIAPAVDDVLAPWQRRSHVAA---ALTIAFGAVFVVVSWLLAFALRDKQRAQAA 342

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+GL N       L          N  LS++F DID+FK+ ND +GH  GD
Sbjct: 343 LLRLASTDPLTGLSNRRVLDKRLDDEWMRARRDNRPLSVLFIDIDHFKRFNDTYGHESGD 402

Query: 153 KVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           +V+  ++D +  V       V R GGEEFA     ++ Q A  +A  +R+ +E+  I   
Sbjct: 403 EVLVAVADCIASVARRSVDLVARYGGEEFAVVLPDTTAQGAFAVAEQIRRKVESRVIVRG 462

Query: 212 SGPSIHITISAGIAE-RCHKEPIS---TIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
                 +T+S G A  R      +    ++  AD  LYVAK  GRNR       E +T 
Sbjct: 463 HEAPQAVTVSVGCATARPSTADFANGLELLAAADAQLYVAKNEGRNRTRSAQWDEYSTA 521


>gi|304321912|ref|YP_003855555.1| hypothetical protein PB2503_11844 [Parvularcula bermudensis
           HTCC2503]
 gi|303300814|gb|ADM10413.1| hypothetical protein PB2503_11844 [Parvularcula bermudensis
           HTCC2503]
          Length = 377

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 62/170 (36%), Positives = 93/170 (54%), Gaps = 9/170 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++  L+  D LSG LN  AF       +     ++  LS V  DID+FK++ND +GH VG
Sbjct: 180 QLYDLAMTDPLSGALNRRAFTILAQREVRRSLRHHNALSAVMVDIDHFKRVNDTYGHAVG 239

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+VIA ++  +  +      +GRLGGEEF      +  ++A  + + L + I        
Sbjct: 240 DEVIASVAALINRIKRQEDLLGRLGGEEFGLILPDTDIEQALRMTDRLIEAIRGLSFTGG 299

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           SG +  IT S G+A  R H +P+S  + RAD+ALY AK++GRNRV    +
Sbjct: 300 SG-TFRITASLGVASLRGHDDPLSEFLRRADEALYKAKENGRNRVEVHGE 348


>gi|119776102|ref|YP_928842.1| diguanylate cyclase [Shewanella amazonensis SB2B]
 gi|119768602|gb|ABM01173.1| putative diguanylate cyclase (GGDEF domain protein) [Shewanella
           amazonensis SB2B]
          Length = 557

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 103/229 (44%), Gaps = 12/229 (5%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE 92
           +F    ++T++      L   G   F    Y   E + + I ++ ++L L        +E
Sbjct: 332 LFLLASLSTMVGSCTTGLAVEGYISFNQWTYRAAE-IGMFIDAMLLALALAAQFRQSEQE 390

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQINDNF 146
             ++     QL+  D L+G+ N  AF   L             +++  DID FK IND  
Sbjct: 391 RVLA----QQLAATDPLTGIANRRAFSEQLQRLWHLDSQRRCRALIMIDIDRFKSINDTL 446

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGDKV+  ++  +          GR GGEEF      +SE+EA I+A  +R  IE+ 
Sbjct: 447 GHEVGDKVLTDIARVIRYSIRNRDQCGRWGGEEFVVLLASASEEEAGIIAERIRHNIESL 506

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                +   + +T S G+           I+ RAD+A+Y AK +G NRV
Sbjct: 507 SFPAPANK-LKVTASVGVCLDEGHSRHEDILRRADEAMYHAKDAGGNRV 554


>gi|152990385|ref|YP_001356107.1| hypothetical protein NIS_0636 [Nitratiruptor sp. SB155-2]
 gi|151422246|dbj|BAF69750.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 486

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 60/195 (30%), Positives = 94/195 (48%), Gaps = 11/195 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSL 122
           ++   +I +  +L     +IL    IS  +  +++ +D L+GL N   F       I   
Sbjct: 294 TIFWQNILLGSILILFLFTILFYFAISRIKFEEMATVDKLTGLFNRHKFQEIAEIEIKRS 353

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
             +   LS++ FDID+FK+IND +GH +GD V+  L+  +        +  R GGEEF  
Sbjct: 354 HRHKRPLSVILFDIDHFKKINDTYGHDIGDVVLRELAKIIKQNIRKYDYAIRWGGEEFLI 413

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
               + E++A  +A  LRK +E+            +TIS G+A     E I   I +AD 
Sbjct: 414 LTPETDEKQAFAMAEKLRKAVESHTFPEVG----KVTISLGVASVDPNESIDQAIKKADN 469

Query: 243 ALYVAKKSGRNRVVC 257
           ALY +K  GRN+   
Sbjct: 470 ALYGSKLGGRNKTTV 484


>gi|197118094|ref|YP_002138521.1| response receiver sensor diguanylate cyclase/phosphodiesterase
           [Geobacter bemidjiensis Bem]
 gi|197087454|gb|ACH38725.1| response receiver sensor diguanylate cyclase/phosphodiesterase, GAF
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 869

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 91/189 (48%), Gaps = 11/189 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDY 138
           +   + E  +   R+  L+  D ++ L N  + ++ LG   E       +L+++F D+D 
Sbjct: 418 TTQRMNEQELHEQRVEYLAHYDMVTKLPNRFSLMARLGQALELAKRFSSRLAVIFIDLDR 477

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILAN 197
           FK IND+ GH +GD+++  ++ +L     +   V RLGG+EF       +    AA    
Sbjct: 478 FKNINDSLGHHIGDRLLFQVAGRLQDTIRSADIVARLGGDEFVVVLPLINSNISAAHAVR 537

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +++ +  SQ        ++IT S GI+      E +  ++  AD A+Y AK +GRN   
Sbjct: 538 KIQQTL--SQGYTVESHELNITPSIGISVYPTDGETVQELMKHADLAMYHAKSAGRNSYQ 595

Query: 257 CFSDIENNT 265
            F+   N T
Sbjct: 596 FFTQEMNLT 604


>gi|153823875|ref|ZP_01976542.1| ggdef family protein [Vibrio cholerae B33]
 gi|126518605|gb|EAZ75828.1| ggdef family protein [Vibrio cholerae B33]
          Length = 245

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 8/176 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L+    ++  LS  D L+GL N    +  L           +    V  DID FK +N
Sbjct: 66  QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVN 125

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH VGDKV+  +++ L   F +   V RLGG+EF      ++      +A  + + I
Sbjct: 126 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETNTAGGVYIAEQVCRAI 185

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   I++ +      ++S G+A      +    ++  ADQA+Y+AK SG+NRV  F
Sbjct: 186 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHELLRAADQAVYLAKNSGKNRVCAF 241


>gi|21492856|ref|NP_659931.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|190894094|ref|YP_001984388.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|21467281|gb|AAM54944.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|190699755|gb|ACE93838.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|327192457|gb|EGE59412.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 852

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 15/207 (7%)

Query: 64  ILVENLSLVIISIT--ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           IL+E   L ++     ++ +LG      + EL  S  +I Q++  D ++ L N   F   
Sbjct: 375 ILLETRKLAVLGAGGEVTGVLG--VSRDVTELNASREKIRQMAFYDPVTSLPNRLLFNER 432

Query: 122 LG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L        S   +  ++  DID+FK +ND  GHPVGD+++  ++ +L         V R
Sbjct: 433 LQKVVSDASSQRRRTGVMLIDIDHFKVVNDTMGHPVGDQLLCQVATRLKKSVRDLDTVAR 492

Query: 175 LGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EP 232
           LGG+EFA       +  +   +A  + +  + S   +  G  ++++ S GIA        
Sbjct: 493 LGGDEFAILLPEIQTTDDLDWVACSILERFKES--FLLDGKEVYVSCSVGIAISPDDSTD 550

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++ ++  AD A+Y+AK+SGRN    +S
Sbjct: 551 VNDLVKYADSAMYLAKRSGRNSFRFYS 577


>gi|1336656|gb|AAB01344.1| Orf1 [Bacillus subtilis subsp. subtilis str. JH642]
          Length = 199

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 62/197 (31%), Positives = 100/197 (50%), Gaps = 11/197 (5%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---- 128
           IISI   +L  YI         + + +    +  D L+G+ N   F  +  +  ++    
Sbjct: 2   IISIAGGMLSLYIIDH-ETNAHLLFKQYKFQAHFDFLTGVYNRRKFEETTKALYQQAADT 60

Query: 129 ----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
                ++++ DID+FK IND +GH  GD+V+  L  +L           R+GGEEFA   
Sbjct: 61  PHFQFALIYMDIDHFKTINDQYGHHEGDQVLKELGLRLKQTIRNTDPAARIGGEEFAVLL 120

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQA 243
              S  +AA +A  +R  + ++ I +++G  + +TIS G A   +  E   ++   ADQ 
Sbjct: 121 PNCSLDKAARIAERIRSTVSDAPIVLTNGDELSVTISLGAAHYPNNTEQPGSLPILADQM 180

Query: 244 LYVAKKSGRNRVVCFSD 260
           LY AK++GRNRV CFS+
Sbjct: 181 LYKAKETGRNRV-CFSE 196


>gi|300867777|ref|ZP_07112421.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
 gi|300334244|emb|CBN57593.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
          Length = 434

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 113/252 (44%), Gaps = 20/252 (7%)

Query: 15  HEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVII 74
           H + LE+F     ++      +    ++++   I     G+  +  LE  L++ L++   
Sbjct: 187 HIELLETFEIRAMLVM--PILTGEYPSLLWGLLIAHQCSGVRKWEQLEINLLQELAM--- 241

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNE 127
                L LG     + ++L  +   + QL+ +DCL+ + N   F          L    +
Sbjct: 242 ----QLALGIQQSQLYQQLKEANVELHQLATVDCLTQIANRRRFDEYLHQEWWRLSHEQK 297

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALG 186
            LS++  DID+FK  ND  GH  GD+ +  ++  +  V   +   V R GGEEFA     
Sbjct: 298 PLSLILCDIDFFKLYNDACGHQAGDRCLKQVAAAIRAVLKHSADLVARYGGEEFAIILPN 357

Query: 187 SSEQEAAILANDLRKIIENSQINISS-GPSIHITISAGIAE--RCHKEPISTIIYRADQA 243
           +    A  +A  +R  I++ +I      P  +IT+S G        K     +I  AD+A
Sbjct: 358 TDAITALSIAETIRSTIKDMRIVHRGLAPDRYITLSLGTTTVVPGPKISPERLISAADRA 417

Query: 244 LYVAKKSGRNRV 255
           LY AK+ GR+RV
Sbjct: 418 LYSAKEQGRDRV 429


>gi|148255939|ref|YP_001240524.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1]
 gi|146408112|gb|ABQ36618.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1]
          Length = 409

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 71/266 (26%), Positives = 119/266 (44%), Gaps = 23/266 (8%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63
           ++     +W    + L    P   +          +   I + N+     G    +   +
Sbjct: 129 AMLTAAELWQERRRTLHRRWPALIV---PAMHGFVLMLPILLGNMLRDADGA---FAAAW 182

Query: 64  ILVENLSLVIISI-TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---- 118
           + + ++ LV+ ++ T+ ++   +S  I+     +       +  D L+GLLN   F    
Sbjct: 183 VTIFSIELVLYAVGTVFVIFMLVSERIVSAHKRA-------ATTDPLTGLLNRRGFADAC 235

Query: 119 ---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
              I+        +S++ FDID+FK IND FGH  GD V+   +D +V         GR+
Sbjct: 236 AQLIAREAREQRPVSVLIFDIDHFKSINDRFGHAEGDTVLKLFADVVVNNLRLTDLSGRI 295

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           GGEEFAA     S +EA + A  +R+    S +     P +  T+S G+A       +  
Sbjct: 296 GGEEFAALLP-CSIEEAMVAAERVREAFAASGVVCEEKP-VDTTVSIGVAGGPAGTELDV 353

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDI 261
           ++  AD ALY AK+SGRNRV   S++
Sbjct: 354 LLAAADTALYKAKRSGRNRVEAASEL 379


>gi|134291596|ref|YP_001115365.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
 gi|134134785|gb|ABO59110.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
          Length = 513

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 10/172 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+R D L+GL N  AF  +L             LS++F DID FK  ND++GH  GD
Sbjct: 334 LQRLARRDALTGLENRGAFDETLRQEWANTLRTGRHLSLLFIDIDQFKSYNDHYGHQSGD 393

Query: 153 KVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           + +  ++  +          V R GGEEF      +  + AA +A ++R+ I +  +   
Sbjct: 394 RALKAVAHCISACVSRPSDHVARYGGEEFVVILPETDVEGAAAVAEEIRQAIHDMHVAHV 453

Query: 212 SGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                ++T S G++   H        +I  AD A+Y AK  GRNRV   ++ 
Sbjct: 454 KSRFNYVTASIGVSSSAHPAVHDGDALIRVADLAVYEAKSQGRNRVCIAAEA 505


>gi|311278684|ref|YP_003940915.1| diguanylate cyclase [Enterobacter cloacae SCF1]
 gi|308747879|gb|ADO47631.1| diguanylate cyclase [Enterobacter cloacae SCF1]
          Length = 507

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 102/205 (49%), Gaps = 18/205 (8%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-- 121
           +L   ++LV+++ T  LLL Y+  +     F+   ++ Q +  D L+GL N   F     
Sbjct: 304 VLCSIIALVVMATTQWLLLNYMHTN-----FLQRQQLIQEAMYDALTGLANRRHFNERVQ 358

Query: 122 -----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     + LS++  D+D+FK+IND +GH VGD+V+  +   L  +      + R+G
Sbjct: 359 WACRTAQRKRQPLSVLSIDLDHFKRINDYYGHSVGDEVLRCIGQLLPGLVREGDIIARVG 418

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           GEEF    L +  +EA ++A  +R    N  I+   G  I  T S G+ +    E  +S 
Sbjct: 419 GEEFVVVMLSTELEEAGVVAEHIRASFANQSIDFH-GRKIQFTASFGLTQIMPDELDVSD 477

Query: 236 ----IIYRADQALYVAKKSGRNRVV 256
                + RAD+ LY AK+ GRNRV 
Sbjct: 478 GIKVALDRADRGLYRAKREGRNRVC 502


>gi|152983813|ref|YP_001346820.1| two-component response regulator [Pseudomonas aeruginosa PA7]
 gi|150958971|gb|ABR80996.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 327

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 12/177 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+GL NH  F   L            +LS++  D+DYFK  N
Sbjct: 139 QQLLETNLVLQRLMNSDGLTGLSNHRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYN 198

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD+ +  ++  +      +     R GGEEFA    G+S   A +LA  +R+ 
Sbjct: 199 DTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRT 258

Query: 203 IENSQINISS-GPSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRV 255
           +E+ QI+     P  H+T+S G++        +    +I  ADQALY AK +GRN+V
Sbjct: 259 VESLQISHDQPRPGSHLTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGRNQV 315


>gi|113971088|ref|YP_734881.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-4]
 gi|113885772|gb|ABI39824.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-4]
          Length = 1009

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +   S + I + +  D L+GL N    +  LG             +++F D+DYFK
Sbjct: 565 SDITDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLGAEIRSADRNRNHFALMFLDLDYFK 624

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           ++ND  GH +GD ++   +++L         V RLGG+EF       +  +    +A  +
Sbjct: 625 EVNDTLGHAMGDLLLIETANRLKSCVRDADVVARLGGDEFTVVLSAMADHKGIERVAEHI 684

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            + I  S+  +    + +I+ S GI         I  ++  ADQA+Y AK  GRNR   F
Sbjct: 685 LRRI--SEPYVLGEETAYISASIGITLYPDDATSIEGLLKHADQAMYAAKDQGRNRFNYF 742

Query: 259 SDIENNTC 266
           +       
Sbjct: 743 TPSMQEYA 750


>gi|257095482|ref|YP_003169123.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257048006|gb|ACV37194.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 922

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 103/234 (44%), Gaps = 28/234 (11%)

Query: 58  FYGLEYILVENLSLVIISITIS-------LLLGYISGSI-LKELFISYNRISQLSRIDCL 109
           + G  +   +N  +  + +TIS       L+  Y++  I + +     +++ +L+  D L
Sbjct: 423 WQGEVWDRRKNGEVYPVWLTISAVKGQGGLVTHYVATHIDITQRKAVEDQLHKLAFYDPL 482

Query: 110 SGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           + L N    +  LG           + +I+F D+D FK +ND  GH VGD+++A ++ +L
Sbjct: 483 TQLPNRRLLLDRLGHVLAGSTRSRNQGAIMFIDLDNFKALNDTQGHDVGDRLLAEVAQRL 542

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQ-----EAAILANDLRKIIE-------NSQINI 210
                    V RLGG+EF       +       +   +A  +   ++       ++++  
Sbjct: 543 KSSVRQCDTVARLGGDEFVVMVQDLAADSMVVAQVEAVAGKILAALDCPYRLVFDAELGR 602

Query: 211 SSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            +  + H T S GI     H   +  ++ +AD A+Y AK SGRN +  F     
Sbjct: 603 RNALNYHCTASIGITLFGAHSTNVDELLKQADLAMYQAKDSGRNAIRFFDPEMQ 656


>gi|225850346|ref|YP_002730580.1| response regulator [Persephonella marina EX-H1]
 gi|225645679|gb|ACO03865.1| response regulator [Persephonella marina EX-H1]
          Length = 615

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 91/176 (51%), Gaps = 9/176 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           E      ++ + S +D L+GL N       +   +++       + I+  D+D+FKQ+ND
Sbjct: 432 EAKSYMEKLRKQSLVDQLTGLYNRRFLEELIPKLSQQTIRRKSTIGILMVDVDFFKQVND 491

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGD V+  ++D L         V R GGEEF    +   + ++  +A  +RK +E
Sbjct: 492 QYGHDVGDTVLKRVADILNKSVREADIVVRYGGEEFIVLLVDVEKGKSVEIAEKIRKKVE 551

Query: 205 NSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
           N  I+ + G ++  T+S G++E  H        I  AD ALY AK++GRN+VV F 
Sbjct: 552 NMVIH-TDGVTLKKTVSIGVSEFPHDSDRFWQCIKFADIALYRAKETGRNKVVRFE 606


>gi|291614684|ref|YP_003524841.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans lithotrophicus
            ES-1]
 gi|291584796|gb|ADE12454.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans lithotrophicus
            ES-1]
          Length = 1080

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 16/191 (8%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            S + E   + + I  L+  D L+ L N   F+            Y +  SI+F D+D FK
Sbjct: 877  SDITERKKAEDEIRNLAFYDPLTLLPNRRLFLERFHTALAASARYGDFGSILFLDLDRFK 936

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAA----I 194
             +ND FGH  GD ++  ++ ++         V R GG+EF      + S  +EAA    +
Sbjct: 937  LLNDKFGHDYGDLLLVEVASRIKACVREIDTVARFGGDEFVVLLESISSDREEAAHKSGV 996

Query: 195  LANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRN 253
            +A  +R  +  S+           + S GI+    + + +  ++  AD A+Y AK +GRN
Sbjct: 997  VAEKIRDAL--SRPYRLKELEYRCSPSIGISLYHGNDDSMDVLLKYADAAMYQAKDAGRN 1054

Query: 254  RVVCFSDIENN 264
             V  +     +
Sbjct: 1055 NVRFYDPEMQS 1065


>gi|114048322|ref|YP_738872.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-7]
 gi|113889764|gb|ABI43815.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-7]
          Length = 1009

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +   S + I + +  D L+GL N    +  LG             +++F D+DYFK
Sbjct: 565 SDITDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLGAEIRSADRNRNHFALMFLDLDYFK 624

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           ++ND  GH +GD ++   +++L         V RLGG+EF       +  +    +A  +
Sbjct: 625 EVNDTLGHAMGDLLLIETANRLKSCVRDADVVARLGGDEFTVVLSAMADHKGIERVAEHI 684

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            + I  S+  +    + +I+ S GI         I  ++  ADQA+Y AK  GRNR   F
Sbjct: 685 LRRI--SEPYVLGEETAYISASIGITLYPDDATSIEGLLKHADQAMYAAKDQGRNRFNYF 742

Query: 259 SDIENNTC 266
           +       
Sbjct: 743 TPSMQEYA 750


>gi|330961138|gb|EGH61398.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 685

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 97/197 (49%), Gaps = 14/197 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++          ++ L +
Sbjct: 227 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVEGMLLRNEKADKYLVV 283

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQ 190
           +F D+D FKQIND+ GH  GD+V+ ++++Q          + R+GG+EF     G    +
Sbjct: 284 LFMDLDGFKQINDSLGHDAGDQVLLWVAEQFKECMRPYDVLARVGGDEFTVVIDGLDYPE 343

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           +AA +A  L + + + +     G  I +  S GIA        +  ++  AD A+Y AK+
Sbjct: 344 QAAKIAEKLIERVSSKRQ--VDGVDIALGASVGIATYPDCGSNLDGLLRAADIAMYEAKR 401

Query: 250 SGRNRVVCFSDIENNTC 266
           +GR +   +    N   
Sbjct: 402 AGRKQYRFYDQNMNGRA 418


>gi|332140687|ref|YP_004426425.1| GGDEF protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550709|gb|AEA97427.1| GGDEF protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 946

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 104/243 (42%), Gaps = 21/243 (8%)

Query: 23  SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL 82
           SP +  +  SI+      T  F  ++FLF+  +   Y L  +   +L          ++L
Sbjct: 718 SPFSIRVLPSIY-----QTFAFKFSVFLFFCFV--IYALYKVRFHHLKKS------EMIL 764

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFD 135
                   + L +   R    +  D L+G+ N  AF            +    L +   D
Sbjct: 765 KQRVDEQTRSLELQTKRFEFQATHDDLTGIANRRAFDRWLVQYFEEAKAKQTPLCLAVID 824

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FKQ+ND + H VGDKVI  ++  L           R GGEEF           A + 
Sbjct: 825 IDHFKQVNDQYSHLVGDKVITEVARILNREVPHYAKCARWGGEEFTVLLPEYDLINARVA 884

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + +RKI+     +  +  ++ +TIS G+A          ++  ADQALY AK++GRN+V
Sbjct: 885 MDHVRKIVAAHDFSFIA-QTLKVTISIGVASADGARDHDRMLTHADQALYTAKENGRNQV 943

Query: 256 VCF 258
             F
Sbjct: 944 TIF 946


>gi|172060668|ref|YP_001808320.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Burkholderia ambifaria
           MC40-6]
 gi|171993185|gb|ACB64104.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Burkholderia ambifaria
           MC40-6]
          Length = 860

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
             + E  +   RI  L+  D L+GL N +         +S      + ++++  D+D FK
Sbjct: 250 QDITERKMQQGRIEYLANHDALTGLPNRNLLSDRMEQAMSQARRTGQLVAVMVLDLDRFK 309

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND+FGH VGD ++  ++ +L         V RLGG+EF    +  +++ +A ++A  +
Sbjct: 310 HINDSFGHSVGDGLLRVVAARLKRSVRDGDTVARLGGDEFVVMLVNLATQADADVIARKI 369

Query: 200 RKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                  +        +H+T S G++          T++  AD ALY AK+ GRN    +
Sbjct: 370 LDTF--IEPFTLDEHDLHVTTSVGVSLCPTDGANAETLLKTADAALYAAKEHGRNCYRFY 427

Query: 259 S 259
           +
Sbjct: 428 T 428


>gi|121997121|ref|YP_001001908.1| PAS/PAC sensor-containing diguanylate cyclase [Halorhodospira
           halophila SL1]
 gi|121588526|gb|ABM61106.1| diguanylate cyclase with PAS/PAC sensor [Halorhodospira halophila
           SL1]
          Length = 454

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 11/182 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
              + E    ++ +   +  D L+ L N +     L         ++   +++ FD+D+F
Sbjct: 277 NEDITEQRELHSELEYRAAHDPLTDLFNRAKIQQLLRAAQAAYIRHHTPFAVLLFDVDHF 336

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQ+ND FGH  GD V+  ++ ++  V      +GR GGEEF   A  + E  A +LA  +
Sbjct: 337 KQVNDRFGHATGDAVLWLMARRIESVLRETDHMGRWGGEEFLILASQTDEAGAEVLAERI 396

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           R  +E +           +TIS G+A       + ++  RAD+ALY AK  GRNR V +S
Sbjct: 397 RHQVETTAFEGVG----TVTISLGVAAAEPGTSLESLEQRADRALYAAKHRGRNRTVRYS 452

Query: 260 DI 261
            +
Sbjct: 453 QL 454


>gi|238787313|ref|ZP_04631112.1| hypothetical protein yfred0001_33000 [Yersinia frederiksenii ATCC
           33641]
 gi|238724575|gb|EEQ16216.1| hypothetical protein yfred0001_33000 [Yersinia frederiksenii ATCC
           33641]
          Length = 414

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 57/186 (30%), Positives = 85/186 (45%), Gaps = 15/186 (8%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLS 130
           I L+L  I    + E       +   +  D L+ L N   F        +    Y +  S
Sbjct: 233 IRLMLCIIH--DITEQKRLEQALEHAALRDPLTDLGNRRQFFPLVEQAHAQSQRYGQNFS 290

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D+FK IND  GH  GD+V+  L+  L  +      V R GGEEF      +   
Sbjct: 291 LILLDVDHFKSINDQLGHHKGDEVLILLARTLESIIRECDIVFRWGGEEFVILLPLTDLN 350

Query: 191 EAAILANDLRKIIENS-QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            A  +A  +R+ I+   Q N+       +T+S G+A+    E   ++  R D+ALY AK 
Sbjct: 351 GALQVAESIRETIQMICQPNLP-----QLTVSLGVAQHQVGEDTDSLFKRMDEALYRAKA 405

Query: 250 SGRNRV 255
           SGRNRV
Sbjct: 406 SGRNRV 411


>gi|292493409|ref|YP_003528848.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291582004|gb|ADE16461.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 906

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 82/185 (44%), Gaps = 9/185 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
           G  + E   +  +++ L+  D L+ L N   F             Y     +++FD+D F
Sbjct: 461 GHDVTEREQAEQQLAWLADHDPLTELFNRRRFQGEFEQILMASKRYKHSGGLLYFDLDQF 520

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND  GH  GD ++  ++D+L  V      + RLGG+EFA          A  +A  +
Sbjct: 521 KYINDTSGHQAGDALLRMVADKLRQVVRASDVIARLGGDEFAVVIRECDADGAVQVARKV 580

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           R  +   +   + G +  I+ S GIA    H   +  ++  AD A+Y AK+ GR     F
Sbjct: 581 RAQLGTLEFP-ARGRNHSISASIGIALFPLHGTTVHDLMANADLAMYQAKEEGRGGWHLF 639

Query: 259 SDIEN 263
           S  E 
Sbjct: 640 SSDER 644


>gi|116048784|ref|YP_792416.1| hypothetical protein PA14_53140 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115584005|gb|ABJ10020.1| hypothetical protein PA14_53140 [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 823

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 11/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            +        R+S  +  D L+GL N   F       +  L   + + +++F D+D FK 
Sbjct: 364 DMTRERQYMARLSWQATHDALTGLTNRREFEYRLQIALERLERNSGRHALMFLDLDQFKL 423

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD+++  +   L         + RLGG+EF         ++A  +A+ LRK
Sbjct: 424 VNDTCGHAAGDELLRQVCTLLQQGLREGDTLARLGGDEFGILLENCPAEKAVEIADHLRK 483

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF-- 258
            +++     S G   + T+S G+         +   +  AD A Y+AK+ GRNRV  F  
Sbjct: 484 TVQDLHFTWS-GQPFNCTVSVGLVHLLPGISTLEEALRSADMACYMAKEKGRNRVQVFHQ 542

Query: 259 SDIE 262
            D+E
Sbjct: 543 DDVE 546


>gi|152986044|ref|YP_001350002.1| hypothetical protein PSPA7_4658 [Pseudomonas aeruginosa PA7]
 gi|150961202|gb|ABR83227.1| hypothetical protein PSPA7_4658 [Pseudomonas aeruginosa PA7]
          Length = 818

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 11/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            +        R+S  +  D L+GL N   F       +  L   N + +++F D+D FK 
Sbjct: 360 DMTRERQYMARLSWQATHDALTGLTNRREFEYRLQMALERLERSNGRHALMFLDLDQFKL 419

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD+++  +   L         + RLGG+EF         ++A  +A+ LRK
Sbjct: 420 VNDTCGHAAGDELLRQVCTLLQQGLREGDTLARLGGDEFGILLENCPAEKAVEIADHLRK 479

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF-- 258
            +++     S G   + T+S G+         +   +  AD A Y+AK+ GRNRV  F  
Sbjct: 480 TVQDLHFTWS-GQPFNCTVSVGLVHLLPGISTLEEALRSADMACYMAKEKGRNRVQVFHQ 538

Query: 259 SDIE 262
            D+E
Sbjct: 539 DDVE 542


>gi|77920645|ref|YP_358460.1| sensory box-containing protein [Pelobacter carbinolicus DSM 2380]
 gi|77546728|gb|ABA90290.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pelobacter carbinolicus DSM 2380]
          Length = 847

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 13/192 (6%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KL 129
           T+  ++G +    + EL         L+  D L+GL N + F                  
Sbjct: 398 TVKSVMGIV--RDITELVEQRELAQHLAFTDMLTGLPNRALFEKRFKEAAAEAKSTDCPF 455

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-S 188
           +++  D+D+FK +ND+ GH  GD+++  ++ +L         + R+GG+EFA     S  
Sbjct: 456 ALLMLDLDHFKDVNDSLGHNCGDELLRQVTARLSHCVNECDTIARMGGDEFAILLAESRG 515

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVA 247
             EA  +A+ +   +   Q        + I+ S GIA   H    +  +   AD A+Y A
Sbjct: 516 SDEAGQVADLILSTLA--QPFFIESQELFISGSIGIAFFPHDSANLDELFTYADTAMYSA 573

Query: 248 KKSGRNRVVCFS 259
           K  GRN   C+ 
Sbjct: 574 KHKGRNNFQCYD 585


>gi|241765550|ref|ZP_04763510.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
 gi|241364639|gb|EER59677.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
          Length = 398

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 101/203 (49%), Gaps = 15/203 (7%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
            +I V + ++ +  + +S +   + G   +E   + ++  Q + +D L+G+ N  A ++ 
Sbjct: 185 HFIQVGSHAMGLAGLVLSTMGFILMG---RERADAEHQ--QQALLDPLTGVPNRRALMAE 239

Query: 122 LGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L             ++++  DID FK++ND +GH  GD V+A ++  L        F+GR
Sbjct: 240 LERTLAQAVRERRPVALLMMDIDRFKRVNDTYGHVAGDAVLAAVAQCLKGGLRGQDFIGR 299

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--P 232
            GGEEF A   G+    A ++A  LR  +E   +       I +T+S G   R   E   
Sbjct: 300 YGGEEFLALLPGTDAAGAGVVAEHLRARVERLTMPW-EPEDIRVTVSIGAHTRVPDEGTG 358

Query: 233 ISTIIYRADQALYVAKKSGRNRV 255
              ++  ADQA+Y AK++GRNRV
Sbjct: 359 AQAMVDVADQAMYAAKRAGRNRV 381


>gi|304320054|ref|YP_003853697.1| putative diguanylate cyclase (GGDEF) [Parvularcula bermudensis
           HTCC2503]
 gi|303298957|gb|ADM08556.1| putative diguanylate cyclase (GGDEF) [Parvularcula bermudensis
           HTCC2503]
          Length = 459

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 59/197 (29%), Positives = 99/197 (50%), Gaps = 15/197 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNR--ISQ---LSRIDCLSGLLNHSAFISSLGSYNE--- 127
           I +  +   +   + ++ ++ + R  +SQ   L+ +D L+G+ N     S L        
Sbjct: 260 IDVQEMAARVRTQLRRKWYVEHLRDSLSQSLELAVLDGLTGIYNRRFLQSQLPRLLTKAV 319

Query: 128 ----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                LS++  D+D+FK +ND +GH VGD V+  +   L           R GGEEF   
Sbjct: 320 KRELPLSVMILDVDFFKAVNDTYGHDVGDAVLREIGHMLHFSLRGMDLACRYGGEEFVVV 379

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH---KEPISTIIYRA 240
              +  + + ++A  LRK I   QI+  +G S  +T+S G+A       +E  ++++ RA
Sbjct: 380 LPETPREGSEVIAERLRKEIAGLQIDAGNGQSFSVTVSIGMAFFDGTSREETPASLLKRA 439

Query: 241 DQALYVAKKSGRNRVVC 257
           D+ALY AK+ GRNRV+ 
Sbjct: 440 DEALYRAKEGGRNRVIL 456


>gi|95928351|ref|ZP_01311099.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95135622|gb|EAT17273.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 526

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 104/235 (44%), Gaps = 12/235 (5%)

Query: 32  SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL-LLGYISGSIL 90
           S++ S  I   +FI  I + + G   F      L   L   +   T +L  L       +
Sbjct: 288 SLYHSALICLGVFIITIIVLHAGTGFFLQRVKQLQSQLETKVFRRTQALQTLNEKLSQEI 347

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIN 143
           +E   S   + ++S  D L+ + N   F         +       +S++  DIDYFK  N
Sbjct: 348 RERKRSQKALQKMSENDMLTNIYNRRKFNTYFSREWDAALREKRVVSLLMIDIDYFKNYN 407

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D++GH  GD  +  ++  L   +     FV R GGEEF      +S   A  LA  LR  
Sbjct: 408 DHYGHLAGDDALIAVAATLKNKLTRPRDFVARYGGEEFVCLLPETSMDAAIYLAEKLRLE 467

Query: 203 IENSQ-INISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNR 254
           I+    ++  S  + HITIS G+A       +    +I +AD+ALY AK++GRN 
Sbjct: 468 IQKLNYVHEYSVAAGHITISVGVASAIPTAGQAKEDLIDQADKALYRAKEAGRNC 522


>gi|172057206|ref|YP_001813666.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15]
 gi|171989727|gb|ACB60649.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15]
          Length = 373

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 72/245 (29%), Positives = 121/245 (49%), Gaps = 8/245 (3%)

Query: 23  SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL 82
           S  + ++ +   +S    TV+ +    L  + LT       ++++ LS+V+ +   S  L
Sbjct: 117 SGTSLIVRWLPLYSRKTFTVVTVYATVLHGLVLTFVLFDTGLILDILSVVLPASFASSWL 176

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFD 135
             +    ++    +   + Q +R D L+GL N  AF   L         ++ +++++  D
Sbjct: 177 ALVIIRDIRLTKHAMQTLQQTARRDFLTGLHNFRAFTDHLEDLKQQTILHSREVALITVD 236

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FKQIND +GH  GD+V+   + +L        +V R GGEEF+      +  +   L
Sbjct: 237 IDHFKQINDTYGHEAGDEVLRQFAKRLQDGVTDSGYVSRNGGEEFSILVERLTVVKVLAL 296

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           A  LR+ I  +   +SSG  +H+T S G+A        I  I+  AD ALY +K++GRNR
Sbjct: 297 AEQLREQIAAAPFVLSSGMLLHLTASFGVASFPETTGQIQHIVTDADAALYQSKQNGRNR 356

Query: 255 VVCFS 259
           V  FS
Sbjct: 357 VTLFS 361


>gi|313682761|ref|YP_004060499.1| response regulator receiver modulated diguanylate cyclase
           [Sulfuricurvum kujiense DSM 16994]
 gi|313155621|gb|ADR34299.1| response regulator receiver modulated diguanylate cyclase
           [Sulfuricurvum kujiense DSM 16994]
          Length = 428

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 96/204 (47%), Gaps = 16/204 (7%)

Query: 67  ENLSLVIISITISLLLGYISGSI----LKELFISYNRISQLSRIDCLSGLLNHSAF---- 118
           +N S   +   I  ++  +   I    + +      R+ ++S  D L+ L N        
Sbjct: 227 KNGSFYWVDTLIYPIVDDLGNHIGYTSISQNITDKKRVEEISVTDQLTQLHNRMYLESSF 286

Query: 119 ---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
              I     Y+   +++  DID+FK++ND +GH VGD V+  +S  L         +GR 
Sbjct: 287 AKEIKRAKRYHHLFAVIMIDIDHFKEVNDTYGHDVGDNVLVSISQILSENIRETDILGRW 346

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPIS 234
           GGEEF      +S  EA  LA  LR  IE   I++        + S G++    + E   
Sbjct: 347 GGEEFLIICPHTSSLEAYNLAEKLRVSIETHPIDVIGYK----SCSFGVSVFDLNDETFK 402

Query: 235 TIIYRADQALYVAKKSGRNRVVCF 258
            ++  +D+ALYVAKKSGRNRVV +
Sbjct: 403 EVLKHSDEALYVAKKSGRNRVVEY 426


>gi|307294699|ref|ZP_07574541.1| diguanylate cyclase with GAF sensor [Sphingobium chlorophenolicum
           L-1]
 gi|306879173|gb|EFN10391.1| diguanylate cyclase with GAF sensor [Sphingobium chlorophenolicum
           L-1]
          Length = 331

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 10/176 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L  L +    + +++  D L+G L   AF++ +         +    S++ FDID+FK+I
Sbjct: 149 LAALVVEQLELRRIAERDHLTGALTRRAFLTEMNRAIALFERHERPASLLLFDIDHFKRI 208

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GHP GD+VI  ++     +      +GRLGGEEF      ++E++AA  A    + 
Sbjct: 209 NDTHGHPAGDQVIRGIARLCTGLQRPSDSLGRLGGEEFGILLPETAEEDAARAAQRFCEA 268

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVC 257
           I  ++I     P + +T+S G+AE     P   + +  AD ALY AK+SGRNRV  
Sbjct: 269 IAAAEIP--GPPPLRVTVSFGVAELRGDWPTGESWLAVADMALYEAKRSGRNRVAV 322


>gi|330826915|ref|YP_004390218.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Alicycliphilus denitrificans K601]
 gi|329312287|gb|AEB86702.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alicycliphilus denitrificans K601]
          Length = 921

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFK 140
           + + E       I + +  D L+ L N   F   L    +        L++VF D+DYFK
Sbjct: 467 ADVTEARRREASIWRQAHYDHLTQLPNRQMFQQDLQRSMDSARASDLPLALVFLDLDYFK 526

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           ++ND FGH +GD+++  ++ +L     +   V RLGG+EF          ++A  +   +
Sbjct: 527 EVNDTFGHDMGDELLRQVARRLQSCVRSSDQVARLGGDEFTLILRDLKRLEDAPAICRKV 586

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +   Q    SG ++H+++SAG+       +   T++  AD A+Y AK+ GRN+   F
Sbjct: 587 LHAVA--QPYELSGSTVHVSVSAGVTFYPRDGDDGVTLLKHADLAMYAAKEQGRNQFCEF 644

Query: 259 SDIENNTC 266
           +       
Sbjct: 645 APTMEQEA 652


>gi|195953783|ref|YP_002122073.1| diguanylate cyclase [Hydrogenobaculum sp. Y04AAS1]
 gi|195933395|gb|ACG58095.1| diguanylate cyclase [Hydrogenobaculum sp. Y04AAS1]
          Length = 497

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 60/195 (30%), Positives = 102/195 (52%), Gaps = 9/195 (4%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLS 130
           I+ ++      ++ EL     +   ++  D L+G+ N   F       I      N  + 
Sbjct: 300 ITYMMAIEIKKLVSELQKDKEKFQDMAYKDALTGIYNRRFFFEEINISIEQAKRANVPIC 359

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           IV +DID FK++ND +GH +GD V+   ++ +V          RLGGEEFAA    +  +
Sbjct: 360 IVMYDIDNFKKVNDTYGHDMGDVVLKDFANVIVSSIRKSDIPARLGGEEFAAYLYNTDIE 419

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
               +AN++R+  ENS   + +G +I  T S GI +   ++ I + + + D+ALYVAK++
Sbjct: 420 NGFRVANNIRQNFENSTHTL-NGTTIKCTCSGGIYQIQQEDGIDSALKKVDEALYVAKRT 478

Query: 251 GRNRVVCFSD-IENN 264
            +NRVV + + IE+ 
Sbjct: 479 TKNRVVIYKEGIEDE 493


>gi|152991401|ref|YP_001357123.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
 gi|151423262|dbj|BAF70766.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
          Length = 344

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 114/252 (45%), Gaps = 17/252 (6%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL 81
           F+P+  + Y  I  S  I   + I  +  F             +    + + +SI  + L
Sbjct: 95  FNPYAIVWYPPIAMSAMILARLKIGTLITFITLAAAILLFHTTIPYIQASIYLSIIAAAL 154

Query: 82  LGYISGSILKELFISYNRISQ----LSRIDCLSGLLNHSAFISS-------LGSYNEKLS 130
            G+I    L E    Y +I++    LS  D L+ L N   F              +  ++
Sbjct: 155 FGWIIEQKLFEFAQKYQQITENLYKLSTTDPLTQLYNRRFFFEECTKKINLAKRKSLPIA 214

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D+FKQIND +GH  GD+++   +  L         V R+GGEEFA   +  +  
Sbjct: 215 LLSIDLDHFKQINDQYGHAQGDEILTSFAKILQKSLRGYDIVARMGGEEFAVCIIDENLN 274

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAK 248
               +AN + + +   ++     PS ++++S GIA     E I    ++ +AD+ALY AK
Sbjct: 275 NVRFIANKILENVRKIEV----APSNNLSVSIGIAFSKPHENINLQQLLIQADKALYRAK 330

Query: 249 KSGRNRVVCFSD 260
           + GR+R+  + +
Sbjct: 331 ERGRDRIEVYEE 342


>gi|170728486|ref|YP_001762512.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169813833|gb|ACA88417.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
          Length = 366

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 19/248 (7%)

Query: 25  HTFMIYFSIFFSIFI-------ATVIFIANIFL-FYIGLTPFYGLEYIL---VENLSLVI 73
           H + + F+I  + F        + ++FI N+ L F+  L  +  L  I     + L+L+ 
Sbjct: 113 HYYFLLFAIIPAAFFEISQWRSSAILFITNLSLYFFFQLNGWEALPEIYELQAQQLNLLR 172

Query: 74  ISITISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGSY-----N 126
           + +  S +   I   ++ E +   N   + +L+  D L+ L N   FI ++        +
Sbjct: 173 VIMVGSSVFTIILLLLISERYSERNEIFLEKLANTDPLTSLNNRRHFIDNVQQQLAKKLD 232

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           + L++   DID+FKQIND  GH  GD+ +  +S  L    G    + R+GGEEFA   + 
Sbjct: 233 QNLALAIIDIDHFKQINDTGGHDAGDEALKHISQILSKHVGEKELLARIGGEEFAILYIE 292

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
           S+ + A    + L +  EN+           IT S G+     ++ +  ++  AD+ALY 
Sbjct: 293 STAELATKKGDALLRQFENTPFYYFE-KEYKITASIGLCLFTGQQDLDQVMREADEALYQ 351

Query: 247 AKKSGRNR 254
           AK+ GRNR
Sbjct: 352 AKEGGRNR 359


>gi|254227922|ref|ZP_04921352.1| ggdef domain protein [Vibrio sp. Ex25]
 gi|262396095|ref|YP_003287948.1| GGDEF family protein [Vibrio sp. Ex25]
 gi|151939418|gb|EDN58246.1| ggdef domain protein [Vibrio sp. Ex25]
 gi|262339689|gb|ACY53483.1| GGDEF family protein [Vibrio sp. Ex25]
          Length = 337

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 67/208 (32%), Positives = 104/208 (50%), Gaps = 11/208 (5%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSI------LKELFISYNRISQLSRIDCLSGLL 113
            +E ++V    LV  S  I     +++  +      +  L      + Q +  D LS L 
Sbjct: 128 SIEEVMVVIRQLVAESHEIRHSTKFLNSQLTNASEEISRLKNQLAEVQQDALFDGLSNLY 187

Query: 114 NHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           N  AF   L S    N+ ++++  DID+FK  NDN+GH  GD V+  ++ +L       +
Sbjct: 188 NRRAFDKDLSSLIASNQAMTLIMLDIDHFKSFNDNYGHLFGDTVLKAIARRLQQSCRDGI 247

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH-ITISAGIAERC 228
              R GGEEFA      S + A   A+ LR++IE  +I +  SG  +H IT S G+AE  
Sbjct: 248 CAYRFGGEEFALIVPNKSLRIARQYADTLRRMIEKLRIRDKRSGTQVHSITASFGVAEYE 307

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256
             +    ++ +AD+ LY AK+ GRNRV+
Sbjct: 308 VGDTPEALVNKADKQLYEAKQLGRNRVM 335


>gi|46201874|ref|ZP_00054171.2| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 352

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 59/201 (29%), Positives = 103/201 (51%), Gaps = 10/201 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL- 122
           +L E   +  ++  + L L   SG + + L    + + + +  D L+ L N   F  SL 
Sbjct: 138 MLAETKVMADLNRQLELRLENSSGEVAR-LRNQLDDLKREASTDALTQLANRKLFDHSLN 196

Query: 123 ------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                  +    LS++  DID+FKQ ND +GH +GD+V+  ++  L  +        R G
Sbjct: 197 LAVLDAQASEAPLSLLMIDIDHFKQFNDTYGHQLGDQVLKLVARSLSEIAQAKDTAARYG 256

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH-ITISAGIAERCHKEPIS 234
           GEEFA     +  +++  +A  +R  +   ++ N  +G  +  +T+S G A     EP  
Sbjct: 257 GEEFAVILPATPLEKSMEVAEAIRNQVSTKRLTNRRTGQVLGQVTLSIGAARLKDAEPAD 316

Query: 235 TIIYRADQALYVAKKSGRNRV 255
           ++++RAD+A+Y+AK+ GRNRV
Sbjct: 317 SLVHRADEAMYLAKRDGRNRV 337


>gi|330949860|gb|EGH50120.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 358

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 114/228 (50%), Gaps = 10/228 (4%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
              + +    L P   L   + +  + + + +   + +G++S  +  +L+   N + ++S
Sbjct: 125 ALGVLISLAALNPVINLHGNMAQIYACLPVLVIYPIFIGWLSHQVTLKLWEHRNILRKVS 184

Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           R D L+GLLNH A+   L           ++  I   DID+FK IND +GH +GD V+  
Sbjct: 185 RTDSLTGLLNHGAWKDLLDLKYASNQGAYQECVIALIDIDHFKVINDTYGHLMGDTVLQS 244

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +S+ L+        +GR GG+EF      +S  +A  +   LR  I+     +     + 
Sbjct: 245 ISEALIENLRDSDLIGRCGGDEFCVILPDTSLFQAKEILERLRLAIDEMTYTLH--CDLK 302

Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +++S GIA    + +  S+ ++ AD+ALY+AK +GRNRVV   D  ++
Sbjct: 303 VSLSIGIAAYSPEMQDASSWLHEADKALYLAKSTGRNRVVSPQDAPSD 350


>gi|330972663|gb|EGH72729.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 664

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 95/197 (48%), Gaps = 14/197 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++          ++ L +
Sbjct: 206 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 262

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQ 190
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF     G    +
Sbjct: 263 LFMDLDGFKQINDTLGHEAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 322

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           +AA +A  L + +   +     G  I +  S GIA        +  ++  AD A+Y AK+
Sbjct: 323 QAAKIAEKLIERVSGRRQ--VDGVEITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKR 380

Query: 250 SGRNRVVCFSDIENNTC 266
           +GR +   +    N   
Sbjct: 381 AGRQQYRFYDQNMNGRA 397


>gi|269836741|ref|YP_003318969.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphaerobacter thermophilus DSM 20745]
 gi|269786004|gb|ACZ38147.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphaerobacter thermophilus DSM 20745]
          Length = 942

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 19/189 (10%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           ++   + E   +       +  D L+ L N + F+  L          ++ ++++F D+D
Sbjct: 477 LTTRDVTERKRAEAEWRHRAYHDPLTNLPNRAFFMDRLQSSLAAGQRRSDAVAVLFVDLD 536

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-----LGSSEQEA 192
            FK++ND  GH  GD+++  L+D+L         + RLGG+EFA           + Q A
Sbjct: 537 GFKEVNDTLGHEAGDRLLVELADRLRRALREQDVIARLGGDEFAIVLVDVVEPNDAVQTA 596

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSG 251
             + + LR+ +      +  G  I I  S GIA          T++ +AD ALY AK++G
Sbjct: 597 ERILDRLREPV------LLDGQPIPIRASIGIALGTPGRDRPDTVLRQADSALYAAKRAG 650

Query: 252 RNRVVCFSD 260
           ++    + +
Sbjct: 651 KSCYALYDE 659


>gi|224823444|ref|ZP_03696553.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
 gi|224603899|gb|EEG10073.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
          Length = 1054

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 57/210 (27%), Positives = 94/210 (44%), Gaps = 12/210 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  E LS+ ++      +  +++  S + E       I  ++  D L+ L N +     L
Sbjct: 584 IYPEWLSISLLRDEAGQVSHHVALFSDISERKEQEAHIRHMAEHDFLTDLPNRALIHDRL 643

Query: 123 GSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                       +L+++F D+D+FK IND  GH  GD+++  ++ +L         VGR 
Sbjct: 644 AQAIRAAARQKNRLAVLFLDLDHFKNINDTLGHAHGDELLKQVAQRLQHTVRGSDTVGRN 703

Query: 176 GGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-I 233
           GG+EF       +S  EAA LA  L   +   +     G ++ I+ S GI+        +
Sbjct: 704 GGDEFVLIVPELASPAEAAQLAQRLLDDLR--RPFQIDGQALAISTSIGISLFPDNGSEL 761

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             ++  AD A+Y AK  GRNR   F+   N
Sbjct: 762 QELLVSADLAMYHAKAQGRNRYQFFTPELN 791


>gi|218246546|ref|YP_002371917.1| diguanylate cyclase [Cyanothece sp. PCC 8801]
 gi|218167024|gb|ACK65761.1| diguanylate cyclase [Cyanothece sp. PCC 8801]
          Length = 462

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 11/180 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           +EL  + +++  L+ ID L+ + N   F          L    + LS++  D+DYFK  N
Sbjct: 277 QELQKANDKLEYLAIIDGLTQVHNRRYFNQYLVQEWRRLMRERQSLSLILCDVDYFKLFN 336

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D++ H  GD  +  ++  +   V      V R GGEEFA     ++E  AA +A  +R  
Sbjct: 337 DHYLHQAGDDCLQKIAQVMQDVVKRPADLVARFGGEEFAIILSNTNELGAARVAQKIRLE 396

Query: 203 IENSQINIS-SGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +E  +I  + S  S ++T+S GIA            +I  AD+ALY AK  GRNR   ++
Sbjct: 397 VEKLKIPHALSQCSEYVTLSLGIATTIPTPDISSERLILAADKALYQAKNMGRNRYCLYA 456


>gi|116253470|ref|YP_769308.1| transmembrane GGDEF sensory box protein [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115258118|emb|CAK09219.1| putative transmembrane GGDEF sensory box protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 287

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 80/232 (34%), Positives = 111/232 (47%), Gaps = 1/232 (0%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           + F +  +    I    +I +    L  +GL P      I    +   +I  T+S +L  
Sbjct: 21  YVFALKMAFLAVILSGVIIALTMPSLDLLGLLPVTLAHAIGFSAIFSWLIGGTVSGMLSL 80

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQIND 144
            +G  +++L +S     +LSR D LSGLLN  AF  +L + +   S+V FD+D FK IND
Sbjct: 81  FAGFAMRDLALSRAEFEKLSRTDTLSGLLNRRAFTEALENTDGNASLVIFDVDRFKAIND 140

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD VI  +S  L   F     V RLGGEEF     G   +        +R  I 
Sbjct: 141 RFGHGCGDAVIVAVSAMLTSAFDEMSVVARLGGEEFGVILSGEPLEARMERIEGVRARIA 200

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              I  + G  I IT+S G+A+         +   AD+ALY+AK  GRNRVV
Sbjct: 201 CGAIK-AEGHDIRITVSGGVADLVAGRNKQAVYASADRALYLAKALGRNRVV 251


>gi|116695531|ref|YP_841107.1| putative GGDEF family protein [Ralstonia eutropha H16]
 gi|113530030|emb|CAJ96377.1| Putative GGDEF family protein [Ralstonia eutropha H16]
          Length = 601

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 82/175 (46%), Gaps = 3/175 (1%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQI 142
           I    L+E      ++   +R D L+GLLN  A       Y  ++  S+V  D+D FKQI
Sbjct: 416 ILRRKLRERASLTEQLEHQARTDSLTGLLNRRALELVAAQYAAHDSASLVLIDVDRFKQI 475

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD+V+  ++  +  +      + R GGEEFA         EAA LA  LR  
Sbjct: 476 NDRHGHAAGDQVLRDIAAMMRALVPPEGVLARFGGEEFALLLPHGRPGEAAALAETLRAE 535

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
           I +  + +S    + +T S G+A     E     +   AD A+Y AK  GRN V 
Sbjct: 536 IASRPVFLSGSTQLCVTASFGVAIGRGGERHWQRLFGAADAAMYRAKAEGRNCVR 590


>gi|291618368|ref|YP_003521110.1| YdaM [Pantoea ananatis LMG 20103]
 gi|291153398|gb|ADD77982.1| YdaM [Pantoea ananatis LMG 20103]
          Length = 533

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 115/249 (46%), Gaps = 16/249 (6%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL----EYILVENLSLVIISI 76
           +  P + ++   +  S+  A +  +  + L  +   P + L      I   + +  I  I
Sbjct: 282 TLQPLSGLLLKVLKHSVPFALLTLLVAVILARMIAMPLWQLARKASKIDASSATYEIGGI 341

Query: 77  TISLL-LGYISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSL---GSYNEKL 129
                    +  ++L  + +  ++I +L   ++ D L+ LLN     + L    +  +  
Sbjct: 342 RAWYFEAAQVKRALLTGIGLVQDKIGRLSSEAQTDSLTLLLNRRGLNAVLDYYQTMRQPF 401

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID+FK +NDN+GH VGD+VI  ++  L         V R GGEEF      +  
Sbjct: 402 AVLALDIDHFKSVNDNWGHDVGDRVIRQVAQTLRQSARQSDVVCRNGGEEFLMLLPNTPL 461

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAK 248
           +EA   A  +R  I ++ I        HITIS G+AE   +  P+ + + RAD ALY AK
Sbjct: 462 KEAEATAERIRISIADNAIEAVG----HITISIGVAEWDARRPPLESSLKRADDALYQAK 517

Query: 249 KSGRNRVVC 257
            SGRN  V 
Sbjct: 518 NSGRNCTVV 526


>gi|237798210|ref|ZP_04586671.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021062|gb|EGI01119.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 712

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 93/197 (47%), Gaps = 14/197 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++          ++ L +
Sbjct: 254 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNEQADKYLVV 310

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQ 190
           +F D+D FKQIND  GH  GD+V+ +++ Q          + R+GG+EF     G    +
Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAQQFKDCMRPYDVLARVGGDEFTVVIDGLDYPE 370

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           +AA +A  L   +   +     G  I +  S GIA        +  ++  AD A+Y AK+
Sbjct: 371 QAAKIAEKLIDRVSGRRQ--VDGVDITVGASVGIATFPDCGSNLDGLLRAADIAMYEAKR 428

Query: 250 SGRNRVVCFSDIENNTC 266
           +GR +   +    N   
Sbjct: 429 AGRQQYRFYDQNMNGRA 445


>gi|157375073|ref|YP_001473673.1| hypothetical protein Ssed_1934 [Shewanella sediminis HAW-EB3]
 gi|157317447|gb|ABV36545.1| conserved hypothetical protein [Shewanella sediminis HAW-EB3]
          Length = 634

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 58/167 (34%), Positives = 79/167 (47%), Gaps = 11/167 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
              I +LS  D L+GL N                 Y  + S++  D+D+FKQ+ND FGH 
Sbjct: 468 RKEIERLSVTDTLTGLNNRRRLDELFINEFDRFNRYERQFSMILLDVDHFKQVNDKFGHK 527

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGDKV+  + + L         +GR GGEEF      +S   A  LA  +RKIIE++   
Sbjct: 528 VGDKVLIEMGEILASSVRKNDLLGRWGGEEFLLICPETSIDGAIDLAEKIRKIIEDTDFP 587

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                   +T S G+      +    +  RAD ALY AK+ GRN VV
Sbjct: 588 EIG----SVTASFGVTVSIKDDSDEDMFIRADNALYTAKRDGRNCVV 630


>gi|289670070|ref|ZP_06491145.1| putative sensor protein [Xanthomonas campestris pv. musacearum
            NCPPB4381]
          Length = 1012

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 7/176 (3%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
            +L  L I  +   + +  D L+GL N   F  +L             L +   DID+FK+
Sbjct: 836  LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSARPLVLAILDIDHFKR 895

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            IND++ H  GD V+  +   L           RLGGEEFA     ++ +EA  L   +R 
Sbjct: 896  INDHYSHASGDAVLHEVGVLLTAAARASDLPARLGGEEFALLLADTTLEEAQALCLRIRA 955

Query: 202  IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +         S   + +T SAG+AE    +  S+++ RAD ALY AK +GR+R+  
Sbjct: 956  LFHARHDWWGSVEGLQVTFSAGVAELRDDDTGSSLMQRADHALYEAKSAGRDRICV 1011


>gi|296133268|ref|YP_003640515.1| response regulator receiver modulated diguanylate cyclase
           [Thermincola sp. JR]
 gi|296031846|gb|ADG82614.1| response regulator receiver modulated diguanylate cyclase
           [Thermincola potens JR]
          Length = 301

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 60/189 (31%), Positives = 85/189 (44%), Gaps = 16/189 (8%)

Query: 84  YISGSILKELFISYNRIS---QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVF 133
           +    +L  + +   R+    +LS  D L+G  N   F   L         Y   L++  
Sbjct: 110 FAMEELLARIEVILQRMRVFHELSMRDELTGSYNRRYFNERLTEEVHRVKRYGRPLTVAM 169

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FKQ+ND +GH VGD V+  L + L         V R GGEEF           A 
Sbjct: 170 IDIDHFKQVNDTYGHQVGDFVLTKLVEFLQNNLRKSDLVARFGGEEFVVLLTEIDADSAE 229

Query: 194 ILANDLRKIIENSQI-----NISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVA 247
            L   +R  +EN+        +    S+ IT+S G+A           II  AD+ALY+A
Sbjct: 230 RLMERIRSALENATFIYNREPLFEKISVKITVSIGLASCPKDATDPERIISLADEALYIA 289

Query: 248 KKSGRNRVV 256
           K +GRNR+V
Sbjct: 290 KNTGRNRIV 298


>gi|152997335|ref|YP_001342170.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150838259|gb|ABR72235.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 556

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 86/174 (49%), Gaps = 12/174 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144
           EL  S   +  ++R D L+ + N  A   +L              +++  D D+FK++ND
Sbjct: 385 ELEASNRSLEAIARKDPLTHIYNRLALDEALHKEYRQAQESKCPFAVIMIDADHFKRVND 444

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +FGH VGD V+  ++  L V  G    V R GGEEF       +  EA  +A  +R+ +E
Sbjct: 445 SFGHTVGDLVLQKIAKLLTVQVGDKGIVARFGGEEFTVLLPNMNADEAKNIAEMIREALE 504

Query: 205 NSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
             ++       +++T S G+A     +     ++ RAD ALY AK+ GRNRVV 
Sbjct: 505 KEEM----SDGLYVTASFGVAMYEIDDSHYEQVLNRADAALYKAKEQGRNRVVI 554


>gi|27380072|ref|NP_771601.1| hypothetical protein bll4961 [Bradyrhizobium japonicum USDA 110]
 gi|27353226|dbj|BAC50226.1| bll4961 [Bradyrhizobium japonicum USDA 110]
          Length = 471

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 68/259 (26%), Positives = 121/259 (46%), Gaps = 20/259 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL 69
            +W+   K+L+   P   +    +     +   I + +    +     F    ++ V  +
Sbjct: 201 ELWVERRKSLQRRWPAFVV---PVMHGCVLMLPILLGSFLRPHDA--GFSSSIWVTVFAV 255

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSL 122
            LV+ ++       ++   ++ E  ++ +R +  +  D L+G+LN   F       I   
Sbjct: 256 ELVLYAVGTV----FVIFMLVSERAVTAHRTA--ASTDPLTGMLNRRGFSEACGRVIERE 309

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                 ++++ FDID+FK IND FGHP GD+++   S  +V         GR+GGEEFAA
Sbjct: 310 AKAGRPVTVMIFDIDHFKSINDRFGHPAGDEMLKLFSTVVVSNLRITDMSGRIGGEEFAA 369

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
                S +E  ++A  +R+  E S + +  GP +  T+S G+A       +  ++  AD 
Sbjct: 370 LLP-CSLEEGVLVAERVREAFETSGVVVDEGP-VDTTVSIGVAGGPAGTELEVLLASADT 427

Query: 243 ALYVAKKSGRNRVVCFSDI 261
           ALY AK+ GRNRV    ++
Sbjct: 428 ALYQAKRGGRNRVEAAEEL 446


>gi|323494656|ref|ZP_08099759.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
 gi|323311089|gb|EGA64250.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
          Length = 338

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 62/172 (36%), Positives = 92/172 (53%), Gaps = 5/172 (2%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           + +L      + Q +  D L+ L N  AF   I++L    +K+ +V  DID+FK  ND +
Sbjct: 165 INQLKSQLAEVQQDALFDSLTSLYNRRAFDGDINTLCRSEQKMCLVLADIDHFKTFNDTY 224

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD VI  ++ +L +     +   R GGEEFA      S + A   A  +R+ +E  
Sbjct: 225 GHLFGDTVIKGIARRLQLSCRDGIHAYRFGGEEFALIVPNKSLRIARQFAESIRRTVEKL 284

Query: 207 QI-NISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            + +  +G SI  ITIS G+AE    E   ++I RAD+ LY AK+ GRNRV+
Sbjct: 285 SVKDRRTGQSIGNITISLGVAELEPGESPESLIERADKLLYEAKQLGRNRVM 336


>gi|304311536|ref|YP_003811134.1| hypothetical protein HDN1F_19060 [gamma proteobacterium HdN1]
 gi|301797269|emb|CBL45489.1| Hypothetical protein HDN1F_19060 [gamma proteobacterium HdN1]
          Length = 916

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 86/199 (43%), Gaps = 14/199 (7%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKL 129
           T + LLG I    + +   +   I  L+  D L+ L N    +  L              
Sbjct: 447 TTAGLLGLI--MDVTDRHQAEEEIRTLAFYDPLTQLPNRRLLLDRLQQGMTASARSQLHG 504

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGS 187
           +++F D+D FK +ND  GH VGD+++  ++ +L         V RLGG+EF      +  
Sbjct: 505 ALIFIDLDNFKSLNDTLGHDVGDQLLVSVARRLQTCVREGDTVARLGGDEFIVMLTEIHG 564

Query: 188 SEQEAAILANDL-RKIIENSQINISSG-PSIHITISAGIAER-CHKEPISTIIYRADQAL 244
           +  ++  +A  +  KII       S G   +  T S GIA    H   +  ++ RAD A+
Sbjct: 565 TTNDSISIAETIGHKIISALNKPYSIGTHELRSTPSLGIALFLGHDTSVDEMLKRADMAM 624

Query: 245 YVAKKSGRNRVVCFSDIEN 263
           Y AK  GRN +  F     
Sbjct: 625 YQAKAVGRNTLRFFDPQMQ 643


>gi|126664512|ref|ZP_01735496.1| GGDEF family protein [Marinobacter sp. ELB17]
 gi|126630838|gb|EBA01452.1| GGDEF family protein [Marinobacter sp. ELB17]
          Length = 347

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 106/232 (45%), Gaps = 17/232 (7%)

Query: 32  SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK 91
           ++FF + +        +FL  + +  FY      +     +  S+ ++ L   I   ++ 
Sbjct: 113 AVFFLMPLRDAAISNFVFLALMAVMAFYVFP---LSEFWRITTSLGLTCLFALIFAWLVG 169

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
            L      +++L+  D L+G  N +    SL         Y+   SI+  D+D+FK IND
Sbjct: 170 RL---QQELTELATTDPLTGCRNRATLAESLTNQIQLCERYDRPSSILLLDLDHFKAIND 226

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD V+  ++  L         + R+GGEEF      +S  EA  LA +L K + 
Sbjct: 227 KWGHHTGDTVLTGIARLLSNRLRDNDHIFRIGGEEFMVLLPETSLPEAETLARELVKSVA 286

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                      I +TIS G+ + C  E  S  + RADQALY AK  GRNRVV
Sbjct: 287 VEPFQT----GIGVTISGGLTQACANETWSVWLKRADQALYKAKSDGRNRVV 334


>gi|172064518|ref|YP_001812169.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           MC40-6]
 gi|171997035|gb|ACB67953.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           MC40-6]
          Length = 326

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 57/203 (28%), Positives = 100/203 (49%), Gaps = 11/203 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           L     +  + +TIS +       + +E   +  ++ + +  D L+G+ N   F + L  
Sbjct: 127 LTRGREVEAVCVTISDVTH--VSVMQREREEAVAKLREHANRDGLTGIANRRFFEARLGD 184

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   LS++ FD+D+FK IND FGH  GD V+   + ++  +  +    GR GG
Sbjct: 185 EFARWQRYGGDLSMLLFDLDHFKTINDRFGHAAGDAVLRETARRVASIVRSQDTFGRFGG 244

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTI 236
           EEFA     ++  EA  +A+ +R  I ++ ++ + G S+ +T S G A           +
Sbjct: 245 EEFALLLPCTNLDEAMRVADKVRDAIGSTPVD-AEGVSVPVTASVGGACATPGVAAPDVL 303

Query: 237 IYRADQALYVAKKSGRNRVVCFS 259
           +  AD ALY AK+ GR+R + ++
Sbjct: 304 VNEADTALYRAKRLGRDRSIAYA 326


>gi|189425170|ref|YP_001952347.1| diguanylate cyclase [Geobacter lovleyi SZ]
 gi|189421429|gb|ACD95827.1| diguanylate cyclase [Geobacter lovleyi SZ]
          Length = 392

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 60/179 (33%), Positives = 89/179 (49%), Gaps = 8/179 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           IS S   +L     R+  + R D L+GL N    ++ L         +N+  S++  D+D
Sbjct: 206 ISDSYQFQLQDLNMRLELMVRTDILTGLANRMEMLNQLEVELKRSERHNKTFSLILGDLD 265

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FKQ+ND FGH  GD+V+  +  QL     +     R GGEEF      +S ++A I+A 
Sbjct: 266 LFKQVNDTFGHLAGDRVLRQIGTQLKDNLRSEDVCARWGGEEFMVLLPETSLEQAVIVAE 325

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            L   +   +I +     IH+T+S G+   C    I   I + D ALY AK +GR+RVV
Sbjct: 326 KLAAAVRGKEI-VWDTQPIHLTMSFGVGAFCAGCSIDEFIQQVDNALYAAKNAGRDRVV 383


>gi|51473435|ref|YP_067192.1| response regulator PleD [Rickettsia typhi str. Wilmington]
 gi|51459747|gb|AAU03710.1| response regulator protein [Rickettsia typhi str. Wilmington]
          Length = 450

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 63/189 (33%), Positives = 88/189 (46%), Gaps = 13/189 (6%)

Query: 81  LLGYISGSILKELFISYNR--ISQ---LSRIDCLSGLLNHSAF-------ISSLGSYNEK 128
           LL  I   + ++ +    R  + Q   L+  D L+GL N   F       I      N K
Sbjct: 260 LLARIRTQLRRKQYQDNLRNDLEQSVNLAAKDGLTGLFNRRYFDIHLKQMIEKANKENIK 319

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L ++  DID FK +ND +GH  GDKV+  +S  L         + R GGEEF        
Sbjct: 320 LYLLMCDIDNFKHVNDTYGHQAGDKVLTIVSRILKNTLRVTDLIARFGGEEFTILLTDID 379

Query: 189 EQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVA 247
             +A   A  +R  IE     I      +  TIS G+ E   +E I +II RAD+A+Y A
Sbjct: 380 ISKAIETAERIRVKIEYMDFYIEGQIEPLKKTISIGVTEYKKEESIESIIKRADKAMYKA 439

Query: 248 KKSGRNRVV 256
           K +G+N+VV
Sbjct: 440 KTTGKNKVV 448


>gi|16331738|ref|NP_442466.1| hypothetical protein sll0821 [Synechocystis sp. PCC 6803]
 gi|12230444|sp|Q55434|PHY2_SYNY3 RecName: Full=Phytochrome-like protein cph2; AltName:
            Full=Bacteriophytochrome cph2
 gi|1673324|dbj|BAA10536.1| sll0821 [Synechocystis sp. PCC 6803]
          Length = 1276

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/235 (28%), Positives = 112/235 (47%), Gaps = 18/235 (7%)

Query: 38   FIATVIFIANIFLFYIGL---TPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
             +  V+F  N++   I     TP Y  E    E+L L++  +   + +    G + ++L 
Sbjct: 1036 LVVPVVFNENLWGLLIAHECKTPRYWQE----EDLQLLM-ELATQVAIAIHQGELYEQLE 1090

Query: 95   ISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFG 147
             +  R+ Q+S +D L+ + N   F          L    E L+++  D+D+FK  NDN+G
Sbjct: 1091 TANIRLQQISSLDALTQVGNRYLFDSTLEREWQRLQRIREPLALLLCDVDFFKGFNDNYG 1150

Query: 148  HPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
            HP GD+ +  ++D +  V       V R GGEEFA     +S + A  +   L+  + N 
Sbjct: 1151 HPAGDRCLKKIADAMAKVAKRPTDLVARYGGEEFAIILSETSLEGAINVTEALQVEVANL 1210

Query: 207  QINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFS 259
             I  +   + H+T+S GIA    +     + ++  AD ALY AK  GRN+ + + 
Sbjct: 1211 AIPHTVSGTGHVTLSIGIAVYTPERHINPNALVKAADLALYEAKAKGRNQWLAYE 1265



 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 82/199 (41%), Gaps = 21/199 (10%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN-----HSAFISSLGS--Y 125
           +  +  + L   I+   +  L      I+Q +  D L+ L N         ++ L +   
Sbjct: 406 LAQVASTQLYMAITQQFVTRL------ITQQTAYDPLTQLPNWIIFNRQLTLALLDALYE 459

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT----PMFVGRLGGEEFA 181
            + + ++   +D FK+IN++FGH  GD ++  ++D+L             + R  G+ F 
Sbjct: 460 GKMVGVLVIAMDRFKRINESFGHKTGDGLLQEVADRLNQKLSPLAAYSPLLSRWHGDGFT 519

Query: 182 AAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYR 239
                 S+ QE   L   L    +  +     G  I++T S GI+      E   +++  
Sbjct: 520 ILLTQISDNQEMIPLCERLLSTFQ--EPFFLQGQPIYLTASMGISTAPYDGETAESLLKF 577

Query: 240 ADQALYVAKKSGRNRVVCF 258
           A+ AL  AK  G+N    +
Sbjct: 578 AEIALTRAKCQGKNTYQFY 596


>gi|297537576|ref|YP_003673345.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera sp. 301]
 gi|297256923|gb|ADI28768.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera sp. 301]
          Length = 828

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 83/183 (45%), Gaps = 13/183 (7%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            + + E       I  L+  D L+ L N   F       I     +    +++  D+D+F
Sbjct: 387 ATDITENAEYRQTIEHLAFHDVLTDLPNRRFFNQALNKAIERAEQHQAAFAVLIMDLDHF 446

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL--AN 197
           K IND  GH VGDK++  ++D++        F  R+GG+EFA    G    EA I   A+
Sbjct: 447 KTINDTMGHAVGDKLLIGVADRIKQNVDDSYFFARMGGDEFAILIHGYESTEALIAKSAS 506

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            L +++   Q    +G    ++ S G+A        +  +I  AD A+Y AK+ GRN   
Sbjct: 507 LLEQVV---QPYYIAGAGYFVSASIGVACYPKDSRDVDDLIKYADSAMYSAKQKGRNNCQ 563

Query: 257 CFS 259
            +S
Sbjct: 564 FYS 566


>gi|294139038|ref|YP_003555016.1| sensory box protein [Shewanella violacea DSS12]
 gi|293325507|dbj|BAJ00238.1| sensory box protein [Shewanella violacea DSS12]
          Length = 1486

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 19/226 (8%)

Query: 58   FYGLEYILVENLSLVIISITISLLLG-------YIS-GSILKELFISYNRISQLSRIDCL 109
            + G +  L E      + + +S +LG       Y++  S + E   S   + +L+  D L
Sbjct: 1001 WTGEQEFLREQGGSCPVWLNVSAMLGSKGNITHYVAVFSDITERKRSEADLRRLANYDVL 1060

Query: 110  SGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
            +GL N S F + L           EKL+++F D+D FK +ND++GH +GD ++   +++L
Sbjct: 1061 TGLPNRSLFATRLTQSIDGAEHSGEKLALIFLDLDRFKHVNDSYGHSMGDALLVEAANRL 1120

Query: 163  VVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                     + R GG+EF       ++      +   L + IE +   +  G    I+ S
Sbjct: 1121 QSCISPEHTLCRFGGDEFVILLRDAANLDTINHICTQLLEQIE-TPFELY-GREFFISTS 1178

Query: 222  AGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             G++           +I  ADQA+Y AK+ GR     FS   N+  
Sbjct: 1179 IGVSLWPDDAREAEVLINNADQAMYHAKEEGRGNFQYFSSERNSEA 1224


>gi|119485663|ref|ZP_01619938.1| hypothetical protein L8106_24810 [Lyngbya sp. PCC 8106]
 gi|119456988|gb|EAW38115.1| hypothetical protein L8106_24810 [Lyngbya sp. PCC 8106]
          Length = 872

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 11/176 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I   +  D L+ L N   F   L           E L + F D+D FK +ND  GH +GD
Sbjct: 431 IRYQACHDALTHLPNRLLFDEQLALALANSKQQPELLGVAFLDLDRFKVVNDTLGHGIGD 490

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS 211
           +++  ++ +L         + R GG+EF       +S  E   +A+ +   +  S   + 
Sbjct: 491 QLLQQVATRLKQCLRNCDTIARWGGDEFTLLFPHLTSTDEITKIAHRILDKL--SIPFVI 548

Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
               +++T S GIA   +  E   T++  AD A+Y AKK GRN    F++  +   
Sbjct: 549 DNQELYVTASLGIALCPYDAEDAQTLLKHADAAMYRAKKQGRNNFQVFAEEMHREA 604


>gi|161521236|ref|YP_001584663.1| diguanylate cyclase [Burkholderia multivorans ATCC 17616]
 gi|189352591|ref|YP_001948218.1| putative diguanylate cyclase [Burkholderia multivorans ATCC 17616]
 gi|160345286|gb|ABX18371.1| diguanylate cyclase [Burkholderia multivorans ATCC 17616]
 gi|189336613|dbj|BAG45682.1| putative diguanylate cyclase [Burkholderia multivorans ATCC 17616]
          Length = 492

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 90/200 (45%), Gaps = 10/200 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128
           +LV       + L  + G+ L+    + + +  L+R D L+GL N  +F   L     + 
Sbjct: 290 ALVATFGAAFIALSVLLGAQLRRRMRAESELILLARTDGLTGLNNRRSFGEVLDREWRRA 349

Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFA 181
                  S++F D+D FK  ND +GH  GD  +A ++  +      P     R GGEEF 
Sbjct: 350 RRVRSVFSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADVAARYGGEEFV 409

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYR 239
                ++E  AA +A  +R  I    +         +T S G+A     + +    II  
Sbjct: 410 VLLPDTAENGAAQIAERIRIAINELGLEHVGSEFGRVTASIGLASWKPDQDVEPDAIIKA 469

Query: 240 ADQALYVAKKSGRNRVVCFS 259
           AD+ALY AK +GRN+V  F 
Sbjct: 470 ADEALYYAKATGRNKVTQFE 489


>gi|91781548|ref|YP_556754.1| diguanylate cyclase [Burkholderia xenovorans LB400]
 gi|91685502|gb|ABE28702.1| Putative diguanylate cyclase (GGDEF domain) [Burkholderia
           xenovorans LB400]
          Length = 522

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 98/235 (41%), Gaps = 19/235 (8%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            + + +   +   +I+  +       G    L+  L + II++ +      +    L+  
Sbjct: 267 MYPLILDVALSTRDIYAQWRHRAWIIG---SLIAALDVTIIALAV------LFSQQLRHR 317

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNF 146
             +   +  L+  D L+GL N   +                 LS++  D+D FK  ND +
Sbjct: 318 RAAEEELRVLACTDGLTGLFNRRTYEQQAEGEWRRAQRNARPLSMLLIDVDNFKGFNDLY 377

Query: 147 GHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           GH  GD+ +  ++  +   V        R GGEEFA     + E  A  +A  +   +E 
Sbjct: 378 GHSAGDEALIGVARCISQSVRRPGDTAARYGGEEFAVLLPDTDEAGATRIAGKICAAVEA 437

Query: 206 SQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCF 258
            Q+   +     +T+S G+A    +       ++  AD+ALY AK +GRN V+CF
Sbjct: 438 LQLRHVASSHCVLTVSIGVATTRGQAFATSRALVDAADEALYEAKDAGRNCVLCF 492


>gi|330446066|ref|ZP_08309718.1| diguanylate cyclase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490257|dbj|GAA04215.1| diguanylate cyclase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 339

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 110/228 (48%), Gaps = 17/228 (7%)

Query: 52  YIGLTPFYGLEYILVENLSLVII-SIT-----ISLLLGYISGSILKE--LFISYNRISQL 103
           +   +P  G    + +N++L  + S+T     I L +  ++     +  L  S  +++ L
Sbjct: 94  FTNFSPISGSSDYMFQNMTLTPLKSLTGEYTHICLTVTDVTDIAKSKNHLRESNAQLTHL 153

Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S  D L+ L N   + + L          ++ +++V FDID+FK++ND +GH  GD VI 
Sbjct: 154 SITDRLTQLYNRGHWENCLSDEFDRYQQLHQPMTLVMFDIDHFKKVNDTYGHVAGDAVIK 213

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++  +          GR GGEEF     G++    +     LRK +E S I +  G +I
Sbjct: 214 NIASIVRSAKRQSDIAGRYGGEEFGVILPGTTADMTSYFTERLRKKVEKSSIEV-DGTAI 272

Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           ++TIS GI E         + + + D ALY +KK+GRN+    ++  N
Sbjct: 273 NVTISLGICELHSGITNYESWLEQTDSALYESKKNGRNQTTVITEEGN 320


>gi|288817375|ref|YP_003431722.1| diguanylate cyclase (GGDEF motif) with PAS/PAC sensor
           [Hydrogenobacter thermophilus TK-6]
 gi|288786774|dbj|BAI68521.1| diguanylate cyclase (GGDEF motif) with PAS/PAC sensor
           [Hydrogenobacter thermophilus TK-6]
 gi|308750982|gb|ADO44465.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobacter
           thermophilus TK-6]
          Length = 523

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 13/176 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + E  I+  ++ +L   D L+ + N  A    L         Y     IVFFDID FK+
Sbjct: 353 DITERKIAEKKLRRLIMYDGLTQIYNRYALEEFLSRELVKAERYKLPFGIVFFDIDDFKR 412

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH +GD V+  L+  +          GR GGEEF         ++ A  A  +RK
Sbjct: 413 INDTYGHKMGDMVLKRLARLVKGNIRKADIFGRWGGEEFLIILPQ--LEDPAAFAEKIRK 470

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++E++  +      I +TIS G+      + + TI+ R D  LY AK+ G+NR   
Sbjct: 471 MVESTVFD----KGIKVTISLGVTTYREGDTVDTILRRVDAGLYRAKREGKNRYYV 522


>gi|239832267|ref|ZP_04680596.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239824534|gb|EEQ96102.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 263

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/215 (29%), Positives = 96/215 (44%), Gaps = 8/215 (3%)

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCL 109
           L  +     + L   L   L L+   I I  L       I ++L      +   +  D L
Sbjct: 50  LDQLSYVTIWLLAATLACGLFLIYPQIRIDALDRGKLQVITQDLSERSQTLEHAALTDSL 109

Query: 110 SGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +G+ N   F  +L  Y       +  + ++  D+D+FK +ND +GH VGD V+   +  L
Sbjct: 110 TGMQNRRYFDEALKEYLVQFDRIHRPVGLMIIDLDHFKTVNDTYGHDVGDIVLQEAARCL 169

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                    V RLGGEEFA  A     +    LAN +RK I   +I++     + +T+S 
Sbjct: 170 RDYTRYHDVVARLGGEEFAVLAPNMDAELMIKLANRIRKAISALEIDLGD-EKLGVTVSI 228

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           G+A    +E    +  RAD+ LY AK  GRNRV  
Sbjct: 229 GLAIWDRRETSKDLYRRADKMLYAAKNMGRNRVCA 263


>gi|226939634|ref|YP_002794707.1| Sensor protein [Laribacter hongkongensis HLHK9]
 gi|226714560|gb|ACO73698.1| Sensor protein [Laribacter hongkongensis HLHK9]
          Length = 379

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/220 (29%), Positives = 110/220 (50%), Gaps = 14/220 (6%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLL--GYISGSIL---KELFISYNRISQL 103
           FLF+  + P     Y      + + I+  ++LL+  G +   +     EL  + N++   
Sbjct: 161 FLFFSSMRP---HTYREEHEQAFMGIARQLALLIERGQMCERLQLLNHELLQAKNQLEVR 217

Query: 104 SRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           +  D L+ LLN  A +  L       ++ L+++  DID+FK +ND  GH  GD  +  ++
Sbjct: 218 ATYDPLTQLLNRGAILEGLSQSCCDPSQPLAVILADIDHFKNVNDVHGHQAGDMALEAVA 277

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            +L  V      VGR GGEEF     G++   A I+A  LR+ +    +++  G S  +T
Sbjct: 278 RRLGRVLRGGDAVGRYGGEEFLIVLPGATPDVAMIVAERLRQAVAGEPVDLGGGRSQSLT 337

Query: 220 ISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+  +   +   ++ +I  ADQALY AK  GRN+V+ 
Sbjct: 338 LSLGVCCQPGGQAHDVACLIAEADQALYAAKAGGRNQVML 377


>gi|83643672|ref|YP_432107.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631715|gb|ABC27682.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 367

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/245 (28%), Positives = 108/245 (44%), Gaps = 12/245 (4%)

Query: 22  FSPHTFMIY-FSIFFSIFIATVIFIANIFLF--YIGLTPFYGLEYILVENLSLVIISITI 78
           F P  F +        + I  V  IA IF F     +   Y L++ L    ++  +S+  
Sbjct: 112 FPPFVFYVAGLRTGSWMLIIMVALIAIIFRFPELPWVRTVYNLDFQLRFAATVSFVSV-F 170

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           + ++ +      +EL        + +R D L+ L N       L         +    S+
Sbjct: 171 AFVMDHSRRKARQELINMARLYEKAARTDELTQLPNRRDMQQQLEKEYFRYKRHGSHFSV 230

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK IND +GH  GD V+  +S+ LV          R GGEEF      +S  +
Sbjct: 231 ILLDIDHFKMINDTYGHDAGDFVLMKISELLVNACRKMDMAARWGGEEFLIQLPDTSLVQ 290

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A  LA  LRK IE S +   +   I  TIS G+      + +++++ +AD  LY AK  G
Sbjct: 291 ALTLAERLRKSIEASPLQYKN-QEIRYTISCGVCSISQAKDLASLLKQADVNLYQAKIKG 349

Query: 252 RNRVV 256
           RN V+
Sbjct: 350 RNMVI 354


>gi|71280809|ref|YP_268663.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71146549|gb|AAZ27022.1| sensory box/GGDEF/EAL domain protein [Colwellia psychrerythraea
           34H]
          Length = 692

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/216 (30%), Positives = 100/216 (46%), Gaps = 15/216 (6%)

Query: 61  LEYILVENLSLVIISITISLLLGY----ISGSILKELFISYNRISQLSRIDCLSGLLNH- 115
            EY L     LV     +S L  Y    +    + E + S   I   +  D L+ L N  
Sbjct: 219 FEYELTMPHGLVHFEARMSYLPEYNQIVLIIRDISEQYKSAEIIRHQAYFDTLTSLPNRF 278

Query: 116 ------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
                 S  ++     NEK++++F D+D FK+IND+ GH +GDKV+   + +L  V    
Sbjct: 279 LALDRLSQMLTEAERNNEKIAVLFLDLDDFKKINDSLGHEIGDKVLIQSAHRLKQVLREG 338

Query: 170 MFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
             VGRLGG+EF     G +E  +A ++  +L K     +  +  G  + +T+S G+A   
Sbjct: 339 DTVGRLGGDEFIVLLRGVTENHDALVITENLLKSFR--EPFVIDGRELMLTLSIGVAISP 396

Query: 229 H-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                 S ++  AD A+Y AK  GRN    FS   N
Sbjct: 397 ENGRCASDLLRNADTAMYKAKDLGRNTYSFFSKKMN 432


>gi|289676957|ref|ZP_06497847.1| GGDEF [Pseudomonas syringae pv. syringae FF5]
 gi|330977848|gb|EGH77751.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 350

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 112/226 (49%), Gaps = 10/226 (4%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
              + +    L P   L   + +  + + + +T  + +G++S  +  +L+   N + ++S
Sbjct: 117 ALGVLISLAALDPVVNLHGNMAQIYACLPVLVTYPIFIGWLSHQVTLKLWEHRNILRKVS 176

Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           R D L+GLLNH A+   L        +  ++  I   DID+FK IND +GH +GD V+  
Sbjct: 177 RTDSLTGLLNHGAWKDLLDLEYASSQNTYQECVIALIDIDHFKVINDTYGHLMGDTVLQS 236

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +S+ L         +GR GG+EF      +   +A  +   LR  I+     +    ++ 
Sbjct: 237 ISEALTENLRDSDLIGRCGGDEFCVILPDTCLLQAKEILERLRLAIDEMTYILH--CNLK 294

Query: 218 ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +++S GIA    +    S+ ++ AD+ALY+AK +GRNRV    D +
Sbjct: 295 VSLSIGIAAYSPEMPDASSWLHEADKALYLAKSTGRNRVASHQDAQ 340


>gi|256004528|ref|ZP_05429507.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum DSM
           2360]
 gi|255991533|gb|EEU01636.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum DSM
           2360]
          Length = 401

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 9/177 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           I  E    Y R+ +++ ID L+G+ N   F   L          N  LS+   DID+FK+
Sbjct: 224 IAMENVELYQRMHEMATIDSLTGIYNRLYFQERLREEFANAKKENYDLSLAIMDIDHFKR 283

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            ND FGH  GDKV+  ++  +     +   + R GGEEF      +S +EA      LR 
Sbjct: 284 FNDTFGHLFGDKVLKHIAHLMKKSLRSGDIIARYGGEEFVILLPRTSVKEAYDKVERLRN 343

Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
           I+  + I         +T+S G++         S ++  AD ALY AK+SGRN V  
Sbjct: 344 IVAKTTIK-DELVEASVTVSFGVSSYPEFANTESELLKTADNALYDAKESGRNCVRI 399


>gi|37677003|ref|NP_937399.1| hypothetical protein VVA1343 [Vibrio vulnificus YJ016]
 gi|37201547|dbj|BAC97369.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 685

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 12/183 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           S +  L    +++ +++  D L+ L N       +    E+       L+++F D+D FK
Sbjct: 496 SDISALKEHEHQLEKIAHYDPLTELPNRLLLKERMAQAMERSKRNNYYLAVLFLDLDGFK 555

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
           ++ND FGH  GD V+  ++ ++  +      + RLGG+EF           +   LA   
Sbjct: 556 EVNDTFGHDAGDDVLYHVAARMKDLVREGDTLARLGGDEFIILVPRVRDSYDIEPLAQRF 615

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
              I  SQ        I ++ S G++     E     ++I +ADQA+Y AK +G+N  + 
Sbjct: 616 LHSI--SQPITIGKEEITLSASIGVSIYFGGEQQDSDSLIRQADQAMYQAKLAGKNCYMF 673

Query: 258 FSD 260
           +SD
Sbjct: 674 YSD 676


>gi|297538651|ref|YP_003674420.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297257998|gb|ADI29843.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylotenera sp. 301]
          Length = 965

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 15/216 (6%)

Query: 64  ILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +  + L++  +S    ++  Y+ SG  + +   +   I  L+  D L+GL N    I  L
Sbjct: 494 VYPKWLTISAVSGKDGVVSHYVGSGIDITQRKAAEEEIRNLAFYDSLTGLPNRRLLIDRL 553

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                         +++F D+D FK +ND  GH VGD ++  ++ +L         + R+
Sbjct: 554 KHALAASARSKMYGAVLFLDLDNFKTLNDTLGHDVGDLLLQQVAKRLSATSREDDTIARI 613

Query: 176 GGEEFAAAALGSSEQ--EAAILANDLRK---IIENSQINISSGPSIHITISAGIAER-CH 229
           GG+EF       S++  EAA  A  +      I N    +S    +  + S G+     H
Sbjct: 614 GGDEFVVILENLSDKPMEAAEHAKVICDKYLSILNESYTLSKYECLS-SPSIGVTLFNDH 672

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           +  I  ++ +AD A+Y AKK+GRN +  F     + 
Sbjct: 673 QSGIEELLKQADIAMYQAKKAGRNAIRFFDPKMQDA 708


>gi|119511103|ref|ZP_01630222.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with GAF sensor and FHA domain [Nodularia
           spumigena CCY9414]
 gi|119464274|gb|EAW45192.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with GAF sensor and FHA domain [Nodularia
           spumigena CCY9414]
          Length = 868

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 13/192 (6%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKL 129
           T+  +   ISG+  ++      +I   +  D L+GL N   F   L           E L
Sbjct: 418 TLLTIAASISGAWQRQQVS--EKIRFQALHDHLTGLPNRLLFNELLEKALPNAIRNGESL 475

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS- 188
           +++F D+D FK IND  GH +GD+++  ++ +L         V R GG+EF       + 
Sbjct: 476 AVMFLDLDLFKLINDTLGHTLGDRLLKEVAQRLKGCLRGGDTVARWGGDEFTILLPRMNY 535

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVA 247
            +E +++A  +   ++N  +    G  ++++ S GIA    H     T+I  AD ALY A
Sbjct: 536 LEEVSLVAQRILGALDN--VFYLDGHELYVSGSLGIAILDEHSADAETLIQHADTALYYA 593

Query: 248 KKSGRNRVVCFS 259
           K  GRN    +S
Sbjct: 594 KDQGRNNYHFYS 605


>gi|20807566|ref|NP_622737.1| diguanylate cyclase/phosphodiesterase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516102|gb|AAM24341.1| Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF)
           [Thermoanaerobacter tengcongensis MB4]
          Length = 670

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 11/175 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFK 140
             + E       + + S  D L+ + N   F+  L    E         S++ FD+D+FK
Sbjct: 497 RDISERKRFEELLYRQSITDPLTNIYNRRFFMQMLEQEIERVKRNKKPFSLIMFDLDHFK 556

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND FGH  GD V+  +++ +        +  R GGEEF      +S   AA LA +LR
Sbjct: 557 NVNDRFGHAAGDTVLRSVANTVKKRIRKTDYFARWGGEEFIILLPETSLNNAAELAEELR 616

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           K I  + ++        +T S G+ E  + + + T++ R D ALY AK SGRN V
Sbjct: 617 KKISETALDGIG----KVTASFGVTEYRNTDTMDTVLLRVDGALYEAKGSGRNCV 667


>gi|220905025|ref|YP_002480337.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869324|gb|ACL49659.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 1032

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/265 (24%), Positives = 115/265 (43%), Gaps = 18/265 (6%)

Query: 8   FLSIWLCHEKNLES-----FSPHTFMIYFSIFFS-IFIATVIFIANIFLFYIGLTPFYGL 61
           FLSI + +  ++ +       P  +  Y S +        V F  +   F +  +   G 
Sbjct: 31  FLSILIVYVFSIPNPMIILMIPIVYATYSSGYLGGALTGCVAFAYSAHFFLVKTSDPSGA 90

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-- 119
              +   LS+  I + +  L        ++EL    + +  ++  D L+G  N  AF   
Sbjct: 91  YKSVTIALSIFAIVLLVGKLKSR-EEKNIQELKRYGDALVHMATTDKLTGASNRHAFFKK 149

Query: 120 -----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
                     +N  +S++F DID+FKQ+ND +GH  GD V+  +S  +           R
Sbjct: 150 GAALHEHSKKFNMPVSVLFIDIDHFKQVNDLYGHAFGDAVLERISGAIKRCLRGSDINCR 209

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-- 232
            GGEEF      +    A ++A+ +  +++   I     P + +++S G++      P  
Sbjct: 210 YGGEEFVVLLAHADSDAAHLVAHRIMNMVQC--IRFQEYPDLRLSVSIGLSSMQPAAPRS 267

Query: 233 ISTIIYRADQALYVAKKSGRNRVVC 257
           +  +I  AD A+Y AK+ GRNRVV 
Sbjct: 268 LEHLIRSADSAMYQAKQDGRNRVVV 292



 Score = 87.4 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 76/177 (42%), Gaps = 19/177 (10%)

Query: 93  LFISYNRIS-QLSRIDCLSGLLNHSAFISSL--GSYNEKLSIVFFDIDYFKQINDNFGHP 149
             I+Y ++  +LS  D L+GL N ++++  +      +   I +  I+  K+IN+ FG  
Sbjct: 608 RRINYEKLLVKLSFEDSLTGLHNRNSYLQGISGAKEVQNAGIAYLSINEMKRINNVFGQA 667

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+++A  +  L   F +     R+GG+EF         ++         + +   +++
Sbjct: 668 HGDRLLAECAHCLKNAFPSG-TAYRVGGDEFLVMCKNMPRKD-------FEQCVRLLKVH 719

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS--GRN----RVVCFSD 260
            S+     +    G         +  + + A++ +Y  KK+   +N    R   ++D
Sbjct: 720 CSTFQDCRVA--IGHQWSETAADMQNLAHAAEKRMYQDKKNHYRKNLPSDRYRHYND 774


>gi|157962824|ref|YP_001502858.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella pealeana ATCC 700345]
 gi|157847824|gb|ABV88323.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella pealeana ATCC 700345]
          Length = 1064

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 96/226 (42%), Gaps = 19/226 (8%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISG--------SILKELFISYNRISQLSRIDCL 109
           + G  ++  +N    ++ +T++ L    +         S + E   +   I + +  D L
Sbjct: 527 WQGEVWLRRKNGEEFVVWLTLNALFDAEAQTQRHVALFSDITEKKQAEKIIWKQANYDTL 586

Query: 110 SGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GL N    +  L +         +  +++F D+DYFK++ND  GH +GD +++  + +L
Sbjct: 587 TGLPNRRMLLDYLNAEILKSDSREQHFALMFLDLDYFKEVNDTLGHDMGDMLLSEAAKRL 646

Query: 163 VVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                    V RLGG+EF     G +  +    +A  +   I   +       + +I+ S
Sbjct: 647 KACIRDSDVVARLGGDEFTIVLSGVTDIKGVDKVAKHILTRIA--EPYNLGEETAYISAS 704

Query: 222 AGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            GI         I  ++  ADQA+Y AK  GRNR   F+       
Sbjct: 705 IGITLYPDDASTIEGLLKHADQAMYAAKDEGRNRFHYFTPSMQRYA 750


>gi|170735237|ref|YP_001774351.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia
           MC0-3]
 gi|169821275|gb|ACA95856.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia
           MC0-3]
          Length = 693

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 59/274 (21%), Positives = 114/274 (41%), Gaps = 23/274 (8%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIA----TVIFIANIFLFYIGLTPFYGLEY--- 63
           +W+   +   S       +  ++     IA    T +  A   L  I       ++    
Sbjct: 157 LWIVFIRRANSSRVRLLNLGSAVLMGAAIAGMHYTGMAAARFLLGSICGAAGSRMDAGWL 216

Query: 64  ---ILVENLSLVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
              I+V  L+++ I++ +S+L   L   +  +   L  +   ++ L+  D L+ L N   
Sbjct: 217 ALVIIVATLAILAIALIVSILDLRLEARTAVLATSLAEANQELTYLALHDNLTKLPNRVL 276

Query: 118 FISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
               +          +   +++F D+D FK +ND +GH VGD ++  ++ ++     +  
Sbjct: 277 LEDRIDQAIQGADREHGSFALMFMDLDGFKAVNDAYGHHVGDLLLVDVARRIGANLRSQD 336

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-H 229
            + RLGG+EF  A       +AA +A+ +  +I   +    +   + ++ S GIA    +
Sbjct: 337 TIARLGGDEFVLAVAVDEPADAADVADKILAVIR--KPFRVAEHELRVSASIGIALYPGN 394

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                 ++  AD A+Y AK  GRN    F    N
Sbjct: 395 GSDFRDLMTNADAAMYHAKALGRNAYCLFEASMN 428


>gi|118497063|ref|YP_898113.1| signal transduction protein [Francisella tularensis subsp. novicida
           U112]
 gi|194324298|ref|ZP_03058072.1| EAL domain protein [Francisella tularensis subsp. novicida FTE]
 gi|118422969|gb|ABK89359.1| signal transduction protein with a PAS, a PAC, an EAL and a GGDEF
           domain [Francisella novicida U112]
 gi|194321745|gb|EDX19229.1| EAL domain protein [Francisella tularensis subsp. novicida FTE]
          Length = 772

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 53/198 (26%), Positives = 94/198 (47%), Gaps = 12/198 (6%)

Query: 79  SLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLS 130
           S ++ Y+S  + + +  I  + I + +  D L+GL N   F S +           +  +
Sbjct: 319 SQVIYYVSVETDISKRRIRLDEIEKYAYQDMLTGLFNRYYFESHISDHIEKGARQRQPFT 378

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F D+D FK++ND +GH  GDK++  +S++L  +      V RLGG+EF    +  +  
Sbjct: 379 LMFLDLDRFKEVNDVYGHQAGDKLLISVSNRLKELVREKDLVARLGGDEFLLFFVDMTID 438

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
            A   A+ + + I     +I     I I+ S G+            ++  AD A+Y AK 
Sbjct: 439 NAIKKAHKVVEYIAK-PYDIDDKQFI-ISASIGVVNYPQDGTDFEHLLKYADAAMYRAKD 496

Query: 250 SGRNRVVCFS-DIENNTC 266
            GRNR   ++ +I +  C
Sbjct: 497 LGRNRFFLYNQEISDKVC 514


>gi|39933854|ref|NP_946130.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           CGA009]
 gi|39647701|emb|CAE26221.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS domain [Rhodopseudomonas palustris CGA009]
          Length = 904

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 57/190 (30%), Positives = 83/190 (43%), Gaps = 10/190 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDY 138
           I+     E      RIS L+  D L+ L N + F   L       S     ++++ DID 
Sbjct: 459 ITHEDATERKRYDERISYLAHFDSLTDLPNRTMFRQRLENELQRASRGAPFALLYIDIDE 518

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILAN 197
           FK IND  GHPVGD+++  ++ +L        FV RLGG+EFA   +G S   EA  L +
Sbjct: 519 FKSINDTLGHPVGDELLKQVAVRLRDCVRETDFVARLGGDEFAIIQIGVSGADEATALVD 578

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            + + I      +  G  +    S GIA        +  ++  AD A+Y AK  GR    
Sbjct: 579 RIYESIRLPYQCL--GHQLSTDASIGIAIAPRDGADLDQLVKNADLAMYSAKAEGRRTFR 636

Query: 257 CFSDIENNTC 266
            F    +   
Sbjct: 637 FFEPEMDAVA 646


>gi|51245404|ref|YP_065288.1| hypothetical protein DP1552 [Desulfotalea psychrophila LSv54]
 gi|50876441|emb|CAG36281.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 330

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 96/213 (45%), Gaps = 15/213 (7%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI---SQLSRIDCLSGLLNHSA 117
             Y+  + +   + S  IS+++ Y + ++L+       ++    + +  D L G  N   
Sbjct: 96  FRYMHQDVVITPLGSDEISVII-YDTTALLEAKATINEQLDIVKKQASTDPLLGCYNRKM 154

Query: 118 FIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           F             +N   S++  DID FK +ND +GH VGD+V+  LS           
Sbjct: 155 FNDLLATEVMRANRHNHPFSLIMIDIDNFKSVNDTYGHLVGDEVLKGLSSLTAKSIRESD 214

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
              R GGEEF      +    AA++A  +R  I N      +G +   T S G++E    
Sbjct: 215 LFARWGGEEFIILLPETYLTGAAVVAEKIRLNIAN----YDNGTAGKRTCSFGVSEFSIG 270

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                +I  AD+ALY AK +G+N+V+ + D +N
Sbjct: 271 TNPEILINNADKALYAAKGNGKNQVMLYRDEQN 303


>gi|330501291|ref|YP_004378160.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas
           mendocina NK-01]
 gi|328915577|gb|AEB56408.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas mendocina
           NK-01]
          Length = 618

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 80/177 (45%), Gaps = 10/177 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144
           E      ++ +LS++D L+GL N   F   L +           L+++  DID+FK  ND
Sbjct: 431 ERLQLEAQLQRLSQLDGLTGLYNRRYFDQQLAAEWRRLRRIDAPLALLMLDIDHFKAYND 490

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GH  GD  +  +S  L            R GGEEFA     +  + A  +A  +   +
Sbjct: 491 ALGHLAGDDALRRVSSALRESLQREGDTACRYGGEEFAIILANTGLEGAEQVAARIHTAL 550

Query: 204 ENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +  I+  + P   +T+S GI  A+    E    ++ R DQALY AK  GRNR   +
Sbjct: 551 ASLDIHHPASPFGRLTLSIGIMAADPVSDEQPGELVARCDQALYQAKHLGRNRTAFW 607


>gi|315636644|ref|ZP_07891877.1| GGDEF/HAMP domain protein [Arcobacter butzleri JV22]
 gi|315479070|gb|EFU69770.1| GGDEF/HAMP domain protein [Arcobacter butzleri JV22]
          Length = 581

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 81/292 (27%), Positives = 135/292 (46%), Gaps = 39/292 (13%)

Query: 2   TRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL 61
           T + ++ + ++  +EK  E +   TF +  +    I IA ++F   I+L  I + P Y L
Sbjct: 296 TLNKQEHIIVFADYEKITEPYLSQTFKLLLTF---IIIALLMFPIMIYLSGIIIKPIYNL 352

Query: 62  --EYILVEN-------------LSLVIISITISLLLGYISG----------SILKELFIS 96
             + I ++N             L + ++S +   +   I+              +EL + 
Sbjct: 353 VKQSIKIKNRKYNHVSQIESPILEIALLSASFENMAQSINSYQNSLEEKVKQRTEELLVK 412

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
              + +LS  D L+ L N      SL         YN+  SI+  DIDYFK++NDNFGH 
Sbjct: 413 NAELLKLSITDNLTKLYNRVKLDKSLQDEINRSQRYNKNFSIILLDIDYFKKVNDNFGHQ 472

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD+V+   +  L         +GR GGEEF      +  ++A  +A+ +   I+  +  
Sbjct: 473 IGDEVLIESAQVLSKNIRNVDILGRWGGEEFLVICPETKIEDAIKVASHINAAIKLHKFT 532

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                   ITIS G+A    H + +  II  AD+ALY AK+ GR++V+ F +
Sbjct: 533 TYPN---TITISLGVATFSKHIKNVDDIILNADKALYQAKEEGRDKVIAFYE 581


>gi|307320013|ref|ZP_07599435.1| diguanylate cyclase [Sinorhizobium meliloti AK83]
 gi|306894390|gb|EFN25154.1| diguanylate cyclase [Sinorhizobium meliloti AK83]
          Length = 414

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 103/211 (48%), Gaps = 13/211 (6%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G+   +V   ++ I++   + LL       + EL  +  R+ +L++ D L+G+ N    +
Sbjct: 198 GIIATVVARRTITILA-QKTFLLELRDMRRVAELADANARLERLAKTDPLTGIANRRWMM 256

Query: 120 SSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MF 171
            +L       +       ++  DID FK +ND  GH  GD+ +  ++  +          
Sbjct: 257 ETLNRLWSTGAERRPGTAMLMCDIDDFKSLNDRLGHAEGDRCLVKVAGIIQSSVRRNRDH 316

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHK 230
           V R GGEEF     G++E+ A   A  +R  +E + +   +   + ++T+S G+A +   
Sbjct: 317 VARYGGEEFLVVLPGANEEAAVATAERIRASVEAASLPNPASRVAPYVTLSIGVAAQAPG 376

Query: 231 EPI---STIIYRADQALYVAKKSGRNRVVCF 258
           E I     +  +AD ALY+AK++GRNRVV +
Sbjct: 377 EEIVAPEKLQNQADAALYLAKQAGRNRVVLY 407


>gi|297568215|ref|YP_003689559.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924130|gb|ADH84940.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2]
          Length = 519

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 85/184 (46%), Gaps = 12/184 (6%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVF 133
           ++      +L+ +        QL+  D L+GL N   F   L           + LS++ 
Sbjct: 328 IIARHFNKLLEVVERLLREKDQLAGTDQLTGLNNRRRFKELLDQELIRYRRIPKPLSLLI 387

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           FDID+FK++ND +GH  GD V+  ++  L           R GGEEF      ++ + A 
Sbjct: 388 FDIDHFKRVNDTYGHETGDLVLKEMAQLLQATVRRTDTPARWGGEEFLVLLPATTAEAAM 447

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGR 252
            LA  LR+ IE             +T S G+A     E   + ++ R D+ALY AK+ GR
Sbjct: 448 ALAEKLRQAIEEHDFPRVG----RVTASFGVAAFHDGEQEESALLRRVDKALYQAKRQGR 503

Query: 253 NRVV 256
           NRVV
Sbjct: 504 NRVV 507


>gi|254524057|ref|ZP_05136112.1| ggdef family protein [Stenotrophomonas sp. SKA14]
 gi|219721648|gb|EED40173.1| ggdef family protein [Stenotrophomonas sp. SKA14]
          Length = 465

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 94/183 (51%), Gaps = 8/183 (4%)

Query: 87  GSILKELFISYNRISQL-SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
            +I   + + + RI +L +  D L+ LLN           I      +   S++  D+D+
Sbjct: 271 AAIRTLMTLLFERIGELDAGSDALTNLLNRRFLPTVLRREIELATRNHTPFSLLLLDLDH 330

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND  GH  GD+ +  ++  L  +     ++ R GGEEF    + +SE +A ++A  
Sbjct: 331 FKAINDGHGHDAGDRALQHVAGLLGQLTRGSDYLFRYGGEEFVVVLVAASESQAEVIAES 390

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           LR+ I  S + +++G  + +T S G+A          ++ RAD A+Y AK+SGRNRVV  
Sbjct: 391 LRRQIAQSSVALANGQVLALTASIGVAGHDGHPDYERLMARADAAMYEAKRSGRNRVVVA 450

Query: 259 SDI 261
           SD 
Sbjct: 451 SDA 453


>gi|149189896|ref|ZP_01868175.1| GGDEF family protein [Vibrio shilonii AK1]
 gi|148836211|gb|EDL53169.1| GGDEF family protein [Vibrio shilonii AK1]
          Length = 317

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 62/169 (36%), Positives = 90/169 (53%), Gaps = 9/169 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSA----FISSLGS---YNEKLSIVFFDIDYFKQINDN 145
           L  S  ++++L R D L+GL N +     FI    S        ++V FDID+FK++NDN
Sbjct: 145 LKRSNEKLTELGRTDGLTGLFNRAYWESQFIEEFNSVQTTGRTSTLVMFDIDHFKRVNDN 204

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD VI   + QL+         GR GGEEFA     ++  +A+  A  LRK +E 
Sbjct: 205 YGHATGDNVIKETAQQLLKAARGSDVCGRYGGEEFAVLLTDTTADQASYFAERLRKRVEE 264

Query: 206 SQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRN 253
             +    G S+  TIS GI E   ++      + RAD+ALY +K++GRN
Sbjct: 265 LCLEF-DGQSLQYTISLGITECSAEDNNHVDWLKRADKALYQSKEAGRN 312


>gi|34556779|ref|NP_906594.1| GGDEF domain protein [Wolinella succinogenes DSM 1740]
 gi|34482493|emb|CAE09494.1| GGDEF DOMAIN PROTEIN [Wolinella succinogenes]
          Length = 436

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 7/176 (3%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQ 141
           +S + +        ++ + +  D L+G+ N       L  +   +E   ++FFDID+FKQ
Sbjct: 262 VSFTDITSFEKENKKLQRQATTDTLTGIDNRFRLQEILEEWKARDESYGVIFFDIDHFKQ 321

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH  GD+++  L+  +           RLGGEEF     G+S  +A  +A  LR+
Sbjct: 322 INDEYGHDKGDEILVGLARLIKTELRDEDIFARLGGEEFVVLLKGASLPKATEIAQRLRQ 381

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            IE     +       ++ S G+A+   +E     I RAD A+Y+AK++GRNRV  
Sbjct: 382 AIEQHPFPMQR----RVSCSFGVAKNQFREEPEETIKRADLAMYLAKRAGRNRVEV 433


>gi|291568084|dbj|BAI90356.1| PleD-like protein [Arthrospira platensis NIES-39]
          Length = 1384

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 68/166 (40%), Gaps = 8/166 (4%)

Query: 100  ISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
            +   S  D L+GL N                     + ++  DID FK  ND FGH  GD
Sbjct: 1217 LEHQSIRDPLTGLFNRRYLEEYLSQEIARAQRQKHPIGVIMMDIDNFKHFNDTFGHDAGD 1276

Query: 153  KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             V+  + + L           R GGEE      GSS +  ++ A  +R+ I +  +    
Sbjct: 1277 YVLQKVGELLKQKVREYDVACRYGGEEMTLILPGSSLENTSMRAEQIREAIASLVVASGG 1336

Query: 213  GPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVC 257
                 IT S G+A       I   +I  AD ALY AK  GRNRVV 
Sbjct: 1337 QHLGSITASFGVAAFPKHGSIGIDLIQAADAALYRAKADGRNRVVI 1382


>gi|330954907|gb|EGH55167.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 392

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 119/285 (41%), Gaps = 36/285 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL------FYIG 54
           + +S    L +WL  +    +     +M    + +++F+ +   +   +L          
Sbjct: 101 LEQSYPVELQVWLA-DIRWPALHGA-WMSLIQLSYAMFLVSFGVLIWQYLEKPRPLHAAQ 158

Query: 55  LTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           +    GL + L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL 
Sbjct: 159 IVGLLGLFWALPKTFILPFTLNILCSQVMLMIAAAVAHEAY-------QMAFRDELTGLP 211

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A    +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        
Sbjct: 212 GRRALNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITSGGGKAY 271

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-------------------SSGP 214
           R GGEEFA      +  E       +R+ I N +I +                   +   
Sbjct: 272 RYGGEEFAIVFAAKTIDECMPHLEAIRETIANYEIQLRNKDSRPQDDQQGRQRRSGAQSG 331

Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S+ +T+S G+AER         ++  ADQALY AK +GRN VV +
Sbjct: 332 SVSVTVSIGVAERQPEHRTPEEVLKCADQALYAAKGAGRNCVVAY 376


>gi|134292515|ref|YP_001116251.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia vietnamiensis
           G4]
 gi|134135672|gb|ABO56786.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia vietnamiensis
           G4]
          Length = 313

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 60/202 (29%), Positives = 100/202 (49%), Gaps = 11/202 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           L     +  + +TIS +       + +E   +  ++ + + +D L+G+ N   F + L  
Sbjct: 114 LTRGRDVEAVCVTISDVTH--VSVMQREREEAVAKLREHANVDGLTGIANRRYFEARLGD 171

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   LS++ FD+D+FK IND FGH VGD V+   + ++  +       GR GG
Sbjct: 172 EFARWQRYGGDLSVLLFDLDHFKTINDRFGHAVGDAVLRETARRVASIVRAQDTFGRFGG 231

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTI 236
           EEFA     ++  EA ++A+ +R  I ++ +  + G S+ +T S G A           +
Sbjct: 232 EEFALLLPCTNLDEALLVADKVRDAIGSTPVE-AEGVSVAVTASVGAAYATPGLASCDVL 290

Query: 237 IYRADQALYVAKKSGRNRVVCF 258
           +  AD ALY AK+ GR+R V F
Sbjct: 291 VNGADTALYRAKRLGRDRSVAF 312


>gi|71906051|ref|YP_283638.1| PAS:GGDEF [Dechloromonas aromatica RCB]
 gi|71845672|gb|AAZ45168.1| PAS:GGDEF protein [Dechloromonas aromatica RCB]
          Length = 317

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 10/180 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            + +++F    ++   S  D L+G+ N   F  ++           E LS++ FD+D+FK
Sbjct: 138 QMEEDVFELNRKLEAWSNQDGLTGIANRRLFDHTMAAEWARGKRSREPLSLLMFDVDHFK 197

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND++GH  GD+ +  L+ ++  +   +     R GGEEFA     +    A  +A   
Sbjct: 198 GYNDHYGHVKGDECLIRLAREVSQMPLRSTDLFARYGGEEFAFVLPQTPSDAAQQIAEKC 257

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVC 257
           R+++   +I  +  P+  ITIS G+      E  S  T+I RAD  LY AK++GRNRV C
Sbjct: 258 REVVAALKIPHALSPAGTITISVGVCTMLPGEESSYMTLIERADDKLYRAKRNGRNRVCC 317


>gi|89092428|ref|ZP_01165382.1| sensory box/GGDEF domain protein [Oceanospirillum sp. MED92]
 gi|89083516|gb|EAR62734.1| sensory box/GGDEF domain protein [Oceanospirillum sp. MED92]
          Length = 301

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 10/188 (5%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS 130
           ++ L+G I    + E      +  +L+  D L+G+ N       L         +   +S
Sbjct: 116 VAGLIGAII--DITEQKTLEKKFKRLATYDDLTGIYNRREGRKQLKQLCKDAVRHKRPIS 173

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
            +  D+D FK IND +GH  GD V+   +  L        FV R GGEEF      +++Q
Sbjct: 174 AILLDLDNFKVINDTYGHDTGDMVLKKAAQSLDRYSRAHDFVCRYGGEEFMIILPETNKQ 233

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKK 249
           +A  +       +   +I I++   + IT S G+ E   +      ++ +AD+ALY AK 
Sbjct: 234 DAVKIGERYLDELRKLEIQITNDEKLKITASIGVGELDAEFTDRELMLKQADEALYRAKA 293

Query: 250 SGRNRVVC 257
           +G+N+V  
Sbjct: 294 NGKNQVCF 301


>gi|148549517|ref|YP_001269619.1| diguanylate cyclase [Pseudomonas putida F1]
 gi|148513575|gb|ABQ80435.1| diguanylate cyclase [Pseudomonas putida F1]
          Length = 493

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 14/203 (6%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI- 119
           + + L  NL+   I   I+L++  +  ++++    S      L+ +D L+GL N  +F  
Sbjct: 292 IRHALYLNLA---ICTMITLVVLALVHAMVRRHQAST---EALATLDSLTGLHNRRSFDL 345

Query: 120 ------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                       +  L  +  D+D+FK +NDN GH  GD+V+   ++ L         + 
Sbjct: 346 LAAQALREARRDSSPLVALLIDLDHFKALNDNHGHLAGDEVLRQFANVLQGSLRQSDILC 405

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEF      +   +A  +A  +R+  E    +  + P + +T S G++     + +
Sbjct: 406 RWGGEEFIVLLREAEGGQAVEVAEKIRRRTEQLTFSYDNQP-LRLTTSIGLSSLQPGDTL 464

Query: 234 STIIYRADQALYVAKKSGRNRVV 256
             ++ RAD+ALY AK++GRNRV 
Sbjct: 465 HALLTRADRALYRAKQAGRNRVC 487


>gi|327479709|gb|AEA83019.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 376

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 101/251 (40%), Gaps = 29/251 (11%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL----------- 82
            F++F+   IFI    L ++       L+Y L   +    +++  S+LL           
Sbjct: 117 MFAVFLPPKIFIRYASLAFLSFVGLAALDYYLERPMDTTALALQASVLLVTLIWMCLFAG 176

Query: 83  ------------GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------S 124
                        Y   +    L     ++  L+  D L+GL N   F+           
Sbjct: 177 HVYRLRQRMRQRRYALQAHQDTLRGMMRQLEDLASTDELTGLYNRRRFLRIAEGDLSRLR 236

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
              +  +   D+D+FK+IND  GH  GD+V+   +            + R GGEEF    
Sbjct: 237 KGHQSGLALIDLDHFKRINDIHGHATGDRVLQTFAKVARSCLRDDDVLARYGGEEFVLLL 296

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +  ++       LR+   +++   +   + H+++S G+      + +   + RAD+AL
Sbjct: 297 PETDAEQFRACCERLREAFASAEPEDAEIAAGHLSLSIGLTLLNAGDELDAALQRADEAL 356

Query: 245 YVAKKSGRNRV 255
           Y AK++GRNR 
Sbjct: 357 YRAKRAGRNRC 367


>gi|260893325|ref|YP_003239422.1| diguanylate cyclase [Ammonifex degensii KC4]
 gi|260865466|gb|ACX52572.1| diguanylate cyclase [Ammonifex degensii KC4]
          Length = 414

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 96/224 (42%), Gaps = 30/224 (13%)

Query: 45  IANIFLFYIGLTP---FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101
           +A  +LF++  +P   F+     L ENL  +  +  ++  L              Y  + 
Sbjct: 203 LALGYLFFLRRSPAPAFFLRRAALRENLGRLGAAALVNSYL--------------YREVK 248

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL N   F       +     Y  KL+I+  D+D FK  ND FGH  GD+ 
Sbjct: 249 ELAERDGLTGLYNRRKFWEIFLKELERAKRYRRKLAILLLDVDNFKDYNDTFGHLAGDEC 308

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  + + +           R GGEEF    + +  + A  +A  LR  +E+         
Sbjct: 309 LRRIGEVIGKEIRASDTAARYGGEEFVILLVETGGEGAVAVAERLRHRVEDI-----GKR 363

Query: 215 SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
               TIS G+A      +    ++  AD ALY AK+SG+NR V 
Sbjct: 364 EPFPTISLGVAVFPEDAQSAEALLTCADNALYTAKRSGKNRTVW 407


>gi|297569589|ref|YP_003690933.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925504|gb|ADH86314.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2]
          Length = 612

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 12/188 (6%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLS 130
           S LL  +   I  E+ ++  R+ +L+  D L+GL N     ++L           +   S
Sbjct: 409 SKLLAAVCEQI--EVALANARLYRLAVTDSLTGLRNKRYCETALRKLVEAHRQDRHRPFS 466

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D+FK++ND  GHPVGD+V++ L++ +           R GGEEF         Q
Sbjct: 467 VLMLDLDHFKRVNDTHGHPVGDEVLSQLAELIRRQLRQDDVACRYGGEEFIVLVTD-GPQ 525

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
               +A  L + ++    + + G ++H TIS G+A    H + ++ +I  ADQALY AK+
Sbjct: 526 TGHKIAARLCRAVDEHTFHCAGGLALHNTISIGVAGFPAHGKTVAEVIGAADQALYEAKR 585

Query: 250 SGRNRVVC 257
           +GRNR   
Sbjct: 586 AGRNRCQL 593


>gi|192290309|ref|YP_001990914.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
 gi|192284058|gb|ACF00439.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
          Length = 736

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 104/234 (44%), Gaps = 34/234 (14%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS 88
           I+ S    I I   + IA +F        F+G++  + +                     
Sbjct: 514 IFASRLLGIIITLQVAIAALFY-------FFGMDRGVRDRFE----------------RQ 550

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           + +EL I    +++ +  D L+GL N   F + L              S++ FDID+FK+
Sbjct: 551 LREELLIQTEDLARQAATDSLTGLANRMKFDARLNEELSRSLRSGRPFSLIIFDIDHFKE 610

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GHPVGD+V+  LS  +         + R GGEEFA     +    A   A  LR 
Sbjct: 611 VNDIYGHPVGDQVLVRLSRTVDASVRQADLLARWGGEEFAILLPDTDAAAAYETAKKLRL 670

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++ ++           IT S G+A+    +   T++ RAD ALY AK +GRNRV
Sbjct: 671 LVAHTIFEHVG----TITASFGVAQVLPGDHADTLVARADNALYRAKLNGRNRV 720


>gi|332535743|ref|ZP_08411489.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034851|gb|EGI71383.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 967

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 106/227 (46%), Gaps = 13/227 (5%)

Query: 51  FYIGLTPFYGLEYI-LVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDC 108
           ++ G T   GL    +  +LS+  I      +  Y+ S   +  +  S  ++ QL+  D 
Sbjct: 478 YWRGDTLIAGLNKEPIWVSLSVSPIREEGGEITSYVASAQDISFVKESQRKMEQLAYFDT 537

Query: 109 LSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GL N + F       ++     +   ++ +FD+D FK+IND  GH  GD+++  ++++
Sbjct: 538 LTGLANRTFFRMQLRKSMALAERGHYAFALFYFDLDEFKRINDTLGHDAGDQLLIEVANR 597

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITI 220
           L         + RLGG+EFA    G   Q  AA +AN ++K + N  I + S   I ++ 
Sbjct: 598 LKKRLRAEDTIARLGGDEFAVLLSGIESQSHAADVANTIQKTL-NVPIKLGSNEVI-VSA 655

Query: 221 SAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           S GI    +       ++  AD A+Y AK  GRN    +S   N   
Sbjct: 656 SIGITMAPYDSLEEDQLLKHADLAMYEAKAKGRNTFHFYSQELNAAA 702


>gi|70730230|ref|YP_259969.1| signaling repeat/GGDEF domain/EAL domain-containing protein
           [Pseudomonas fluorescens Pf-5]
 gi|68344529|gb|AAY92135.1| signaling repeat/GGDEF domain/EAL domain protein [Pseudomonas
           fluorescens Pf-5]
          Length = 691

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 99/214 (46%), Gaps = 13/214 (6%)

Query: 64  ILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +L+  L+++II++  S+L   +      + + L  +   ++QL+  D L+GL N      
Sbjct: 220 VLITTLAVLIIALLTSVLDARLEARTAVLAQSLTEANKELTQLALHDTLTGLPNRILLAD 279

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            +     +        +++F D+D FK +ND FGH +GD+++  ++ +L     +   + 
Sbjct: 280 RIDQAMHRVTAHGGCFALMFIDLDGFKPVNDAFGHHMGDQLLREVAQRLREDLRSEDTLA 339

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           R+GG+EF      +   +A  LA     ++  S     +   + I+ S GIA    +   
Sbjct: 340 RIGGDEFVLLVQLAEPDDALRLAARQVGLVSRS--FRVAEHDLQISASIGIAVYPGNGLS 397

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              ++  AD A+Y AK +G+N    F    N+  
Sbjct: 398 AQELLMNADAAMYHAKGTGKNGYSFFDASMNSNA 431


>gi|239995196|ref|ZP_04715720.1| GGDEF protein [Alteromonas macleodii ATCC 27126]
          Length = 961

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 104/244 (42%), Gaps = 21/244 (8%)

Query: 23  SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL 82
           SP +  +  SI+      T  F  ++FLF+  +   Y L  +   +L          ++L
Sbjct: 732 SPFSIRVLPSIY-----QTFAFKFSVFLFFCFV--IYALYKVRFHHLKKS------EMIL 778

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFD 135
                   + L +   R    +  D L+G+ N  AF            +    L +   D
Sbjct: 779 KQRVDEQTRSLELQTKRFEFQATHDDLTGIANRRAFDRWLVQYFEEAKAKQSPLCLAVID 838

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FKQ+ND + H VGDKVI  ++  L           R GGEEF           A + 
Sbjct: 839 IDHFKQVNDQYSHLVGDKVITEVARILNREVPHYAKCARWGGEEFTVLLPEYDLVNARVA 898

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + +RKI+     +  +  ++ +TIS G+A          ++  ADQALY AK++GRN+V
Sbjct: 899 MDHVRKIVAAHDFSFIA-QTLKVTISIGVASADGARDHDRMLTHADQALYTAKENGRNQV 957

Query: 256 VCFS 259
             F 
Sbjct: 958 TIFE 961


>gi|78484435|ref|YP_390360.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78362721|gb|ABB40686.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Thiomicrospira crunogena XCL-2]
          Length = 420

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 11/180 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           +G  + E       ++ L+  D L+G+ N           +  +  Y  +  ++ FD+DY
Sbjct: 245 TGKDVSEQVKMQQELNDLAMKDALTGIWNRRHLTDVVNTEMKRVNRYGGRFGMIMFDVDY 304

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQIND+FGH +GD+ +  ++  +  +     ++GR GGEEF   AL       A LA  
Sbjct: 305 FKQINDDFGHDIGDETLVQIAKIVQKIVRETDYIGRWGGEEFLLIALELDASLTAKLAEK 364

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +R+ IE             +T+S G       E  + +  RAD+ALY+AK+ GRNRV  +
Sbjct: 365 IREAIEEFVFPKVG----QVTVSLGATVYHKNETEAQLFKRADEALYLAKRHGRNRVEVY 420


>gi|15600680|ref|NP_254174.1| hypothetical protein PA5487 [Pseudomonas aeruginosa PAO1]
 gi|218894590|ref|YP_002443460.1| putative GGDEF domain protein [Pseudomonas aeruginosa LESB58]
 gi|9951821|gb|AAG08872.1|AE004961_7 hypothetical protein PA5487 [Pseudomonas aeruginosa PAO1]
 gi|218774819|emb|CAW30637.1| putative GGDEF domain protein [Pseudomonas aeruginosa LESB58]
          Length = 671

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 78/164 (47%), Gaps = 8/164 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            Q +  D L+GL N +A    L             L +   DID+FK+IND+FGH  GDK
Sbjct: 508 RQKALTDPLTGLPNRAALSERLEQEVARRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDK 567

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  ++ +L        F+ R GGEEF      +S +    L   LR  I     +   G
Sbjct: 568 VLKIIAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHFK-G 626

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             + IT SAGI      E    +  RADQALY AK++GR+R+  
Sbjct: 627 EPLSITCSAGITAFEGNEAGEAVFERADQALYRAKRAGRDRLEV 670


>gi|13476460|ref|NP_108030.1| hypothetical protein mll7787 [Mesorhizobium loti MAFF303099]
 gi|14027221|dbj|BAB54175.1| mll7787 [Mesorhizobium loti MAFF303099]
          Length = 724

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 81/187 (43%), Gaps = 10/187 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYF 139
           ++   + E   +  R+  L+  D L+GL N S F   L    E      L+I   D+D F
Sbjct: 279 VTFDDVTERRRTEERMIHLAHHDTLTGLPNRSMFRERLDLALEDAAAPPLAIFSLDLDRF 338

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGS-SEQEAAILAN 197
           K IND +GHP GD ++  ++++L          V R GG+EF      S    +A  LA 
Sbjct: 339 KAINDTWGHPAGDWLLKSVAERLQRCLHNETDVVARFGGDEFVVMQFNSKGIADAEKLAK 398

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            + + I            +HI IS GIA          T++  AD ALY AK  GRN   
Sbjct: 399 RIVEAIAKQ--FRDKSRDMHIGISLGIAVFPQDGRDADTLLKNADTALYRAKSEGRNLYR 456

Query: 257 CFSDIEN 263
            F    +
Sbjct: 457 FFEPAMD 463


>gi|88810327|ref|ZP_01125584.1| putative diguanylate cyclase [Nitrococcus mobilis Nb-231]
 gi|88791957|gb|EAR23067.1| putative diguanylate cyclase [Nitrococcus mobilis Nb-231]
          Length = 679

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 11/189 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFF 134
           + Y  G  + +   +   + +LS  D L+GL N   F   L     +L       +++F 
Sbjct: 473 IIYAYGQDVTQQKWAEGYLRELSIRDSLTGLANRRHFDEFLDQQWRQLMRSNARIALLFI 532

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           DID+FK  ND +GH  GD  +  ++  +            R GGEEF           A 
Sbjct: 533 DIDHFKGYNDRYGHQAGDACLKKIAAVIAGAARRAGDLAARYGGEEFVVVLAQVERPYAQ 592

Query: 194 ILANDLRKIIENSQINISSGPSI-HITISAGI--AERCHKEPISTIIYRADQALYVAKKS 250
             A  LR+ +EN  I      +  ++T+S G+  A+       S ++  AD+ALY AK  
Sbjct: 593 DTAETLRRAVENLAIPHQDSKTASYVTVSIGLVCAKPDAALSASRLLEAADKALYRAKSR 652

Query: 251 GRNRVVCFS 259
           GRNRV   +
Sbjct: 653 GRNRVEFAT 661


>gi|108803901|ref|YP_643838.1| diguanylate cyclase [Rubrobacter xylanophilus DSM 9941]
 gi|108765144|gb|ABG04026.1| diguanylate cyclase [Rubrobacter xylanophilus DSM 9941]
          Length = 378

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 12/197 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ 118
           + +  + +   I +     Y+   + ++  ++   + +L+  D L+G+ N  +       
Sbjct: 182 IAQQSAFLAAVIALVYATSYVKSQLARQRTLAEA-MHRLAHTDPLTGISNRRSLYAALRR 240

Query: 119 -ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
            + +   Y + LS++ FD+D FK +ND +GH  GD  +  ++            +GR GG
Sbjct: 241 EMEAARRYGKPLSVILFDLDRFKLLNDTYGHNQGDAALRRVAHTARAALRASDHLGRWGG 300

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EEF   A  +   +A  LA  LR+ I   +          +T S G+A     +    ++
Sbjct: 301 EEFIVLAPETDLDQARHLAERLREAIALDRPP----GRPPLTASFGVASCRPDDSPEDLL 356

Query: 238 YRADQALYVAKKSGRNR 254
            RAD+ LY AK  GRNR
Sbjct: 357 RRADEGLYRAKAGGRNR 373


>gi|332706024|ref|ZP_08426097.1| response regulator receiver, modulated diguanylate cyclase [Lyngbya
           majuscula 3L]
 gi|332355284|gb|EGJ34751.1| response regulator receiver, modulated diguanylate cyclase [Lyngbya
           majuscula 3L]
          Length = 318

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 81/176 (46%), Gaps = 11/176 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           +L I+   + +L+ ID L+ + N  AF          L      LS+V  DID+FK+ ND
Sbjct: 139 QLKIANKELERLATIDGLTQVANRRAFDKYFNNEWYRLAREENPLSLVLCDIDFFKRYND 198

Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD+ +  ++  L          V R GGEEF      +  Q A  +A  +   +
Sbjct: 199 TYGHQSGDECLKQVAQILGEAAKRPGDLVARYGGEEFVVILPSTDIQGAIQVAETIETKL 258

Query: 204 ENSQINISSG-PSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVV 256
               I  S    S  +T+S G A      K     + Y AD+ALY AK +GRNR+V
Sbjct: 259 YKKAIPHSGSLVSDIVTVSLGGASTIPSVKSSPDNLFYEADKALYKAKTAGRNRLV 314


>gi|86609610|ref|YP_478372.1| sensory box protein [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558152|gb|ABD03109.1| sensory box protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 671

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 14/191 (7%)

Query: 81  LLGYISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLGS-----YNEKLSIV 132
           LLGY    I +++      ++ +   +  D L+GL+N  +F   L       Y+E L++ 
Sbjct: 473 LLGY--EGICEDITAQKQSLAYMEFRAHHDALTGLVNRESFRERLQQTLQQYYSECLALF 530

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQE 191
           F D+D+FK IND FGH VGD ++  ++++L         V R GG+EF        S   
Sbjct: 531 FVDLDHFKDINDTFGHSVGDALLQGVAERLTKCVRPGDIVARWGGDEFTLLLPRIGSSTV 590

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250
           AA LA  +  + +        G S+ +T S G+A        +ST+++ AD ALY  K++
Sbjct: 591 AARLAQRIVDVFQT--PFSCEGHSLSVTCSIGVALYPQDGVEVSTLLHHADLALYQVKEN 648

Query: 251 GRNRVVCFSDI 261
           GR+    +  +
Sbjct: 649 GRSGFRLYRPV 659


>gi|113969504|ref|YP_733297.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-4]
 gi|113884188|gb|ABI38240.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-4]
          Length = 878

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 11/207 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  +N+++  I   +  +  +++  S +     S  +++ L+  D L+ L N    +  L
Sbjct: 411 IFPQNITISTIYDELGDVRYFVAVFSDISAQKQSEAQLAHLAYFDPLTHLPNRMKLMMQL 470

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     N +L+ VF D+D FK IND+FGH +GD+++  L+ +L         + R+
Sbjct: 471 KQELRHAKRLNAQLATVFIDVDLFKHINDSFGHSIGDEMLVELAKRLRSQLQEQDVLSRI 530

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-I 233
           GG+EF A   G  S ++AA   N LR++ E     +S+G  + +T S G++         
Sbjct: 531 GGDEFVALISGIQSHEDAAAAINQLRQVFEQ-PFVVSTGDHLRLTASMGVSIYPDDGSNA 589

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSD 260
            T++  AD A+Y AK  GRN    +++
Sbjct: 590 DTLLRNADAAMYRAKSEGRNNFAFYTE 616


>gi|167573038|ref|ZP_02365912.1| putative transmembrane transcriptional sensor regulator
           [Burkholderia oklahomensis C6786]
          Length = 490

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 13/196 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN------ 126
           + ++   ++  Y++ S+ ++   +   +++L+  D L+GL N  A   +L          
Sbjct: 291 VFALIFVVMSAYLAHSLWRK-STAEAALARLAGTDSLTGLHNRRALDETLEREWRRAVCG 349

Query: 127 -EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAA 184
              L+I+F DID+FK+ ND +GH VGD V+A +S  +          V R GGEEF    
Sbjct: 350 ERPLAILFVDIDHFKRYNDTYGHQVGDDVLATVSRCIAQQAARLGDVVARYGGEEFVVVL 409

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRA 240
             +    A ++A  +R  +    I         +T+S G+A           ++ ++  A
Sbjct: 410 PDTPRGGALVVAERVRMGVRMLGIEHEGSEVGFVTVSVGVAVWQPDGTPAPHVAAVVEAA 469

Query: 241 DQALYVAKKSGRNRVV 256
           DQALY AK  GRNRV 
Sbjct: 470 DQALYQAKAGGRNRVA 485


>gi|86609720|ref|YP_478482.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558262|gb|ABD03219.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 364

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 58/189 (30%), Positives = 86/189 (45%), Gaps = 13/189 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----------GSYNEKLS 130
           L        ++L      +  LS  D L+G LN  A   +L            +    L 
Sbjct: 162 LTQALAQANRQLRARNELLESLSLTDPLTGALNRRALDQALPHLLKQVGPRGEARYRYLC 221

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D+FKQ+ND++GH +GD V+  +  +L         + R GGEEF     G S  
Sbjct: 222 LLMMDVDHFKQVNDSYGHYIGDCVLQAIVGRLQNQLRPSSLLYRYGGEEFVCVTPGLSPP 281

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAK 248
                A  LR+ I    I+IS   S+ +TIS G  +    +     T + +AD ALY AK
Sbjct: 282 RCGRYAESLRQAIAKRPIDISPKRSLPVTISIGGIVLSEDYCPEPETALQQADSALYQAK 341

Query: 249 KSGRNRVVC 257
           ++GRNRV  
Sbjct: 342 QAGRNRVHI 350


>gi|330501090|ref|YP_004377959.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328915376|gb|AEB56207.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 618

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 61/172 (35%), Positives = 85/172 (49%), Gaps = 8/172 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++         Q S +D L+GL N +A+   L         Y  +L +   DID+FK+IN
Sbjct: 445 QQFRQHIEEQRQKSLLDPLTGLPNRAAWSERLDLEIARRQRYGGQLLMAVLDIDHFKRIN 504

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD+V+  ++ +L        F+ R GGEEF     G+       L   LR  +
Sbjct: 505 DGYGHLAGDRVLKIIAGELHKRLRKTDFIARFGGEEFVLLIPGTPLDGGVQLLETLRAAV 564

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           E    +   G  + IT+SAGIAE  + E       RADQALY AK +GRNRV
Sbjct: 565 EACPFHFK-GEPVTITLSAGIAEFRNDEATEDTFERADQALYRAKGAGRNRV 615


>gi|300693377|ref|YP_003749350.1| signal transduction ggdef domain transmembrane protein [Ralstonia
           solanacearum PSI07]
 gi|299075414|emb|CBJ34709.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum PSI07]
          Length = 512

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 100/233 (42%), Gaps = 20/233 (8%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           + +++A      +I+  +       GL         LV +   +++ L Y     L++  
Sbjct: 264 YPLYVAVGAATEDIYANWTSRAWAIGL---------LVAVFNLVTMALAYEFAKQLEKRL 314

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFG 147
            +  R ++L+  D L+ L N  A  + L    +        +S++  D+D FK  ND++G
Sbjct: 315 AAGRRHAELAITDALTSLPNRRALDACLDKEWKRALRERWPVSLLMIDVDAFKLYNDHYG 374

Query: 148 HPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  GD  +  ++  +            R GGEEF      +  + AA +A  +R+ +   
Sbjct: 375 HLGGDTALKAVARCIQAHACRPGDLAARYGGEEFCVVLPHTDLEGAAAVAEHIRQAVLAL 434

Query: 207 QINISSGPSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRVV 256
            I  + GP+  +++S G+A        +   T+   AD  LY AK  GRNR +
Sbjct: 435 HIPHAQGPAGILSVSIGVASDTPALSGDRAETLTQAADTQLYRAKTQGRNRTM 487


>gi|167625671|ref|YP_001675965.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167355693|gb|ABZ78306.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 295

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 84/173 (48%), Gaps = 11/173 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
            +   +  +L++ D L+GL N           I  L  +   LSI+  D+D+FK +NDN+
Sbjct: 126 KLLEEKALKLAKTDVLTGLANRLELDSVLSYEIERLKRFQHPLSIIMLDLDHFKTVNDNY 185

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH +GDK +  ++  +   F     VGR GGEEF      +    A  LA   R++IE  
Sbjct: 186 GHLLGDKCLINIAKMMKNNFRLIDTVGRWGGEEFLIICPETDFNGAIKLAEKFRRLIEEH 245

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                      IT S G+      +   T++ RAD+ALY AKK+GRNRV  F 
Sbjct: 246 IFPEVK----RITGSLGVTSFIEGDTHETLVNRADKALYKAKKAGRNRVEAFE 294


>gi|162456909|ref|YP_001619276.1| FHA domain-containing protein [Sorangium cellulosum 'So ce 56']
 gi|161167491|emb|CAN98796.1| FHA domain protein [Sorangium cellulosum 'So ce 56']
          Length = 299

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 93/185 (50%), Gaps = 11/185 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVF 133
           +  ++SG+ ++  +  +  I +++ ID L+ + N      +L         +   L+I+ 
Sbjct: 118 IFKFLSGADVEAQY--HEEIYRMTIIDGLTQIHNKRYLYEALEREIIRGRRHERDLAILL 175

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           FDID+FK+IND  GH  GD V+  ++  +           R GGEEFA     +S + AA
Sbjct: 176 FDIDHFKRINDVHGHLAGDFVLKEVARIVQSRIRRDEVFARYGGEEFAIILPETSIEGAA 235

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGR 252
            L   LR+ +    + +    SI +TIS G+A     +   + +I RAD+ LY AK SGR
Sbjct: 236 ALGETLRQKVAEH-LFVFQADSIRVTISVGVALLQEGDRTANDLIKRADERLYHAKNSGR 294

Query: 253 NRVVC 257
           NRV  
Sbjct: 295 NRVCA 299


>gi|225849586|ref|YP_002729820.1| diguanylate cyclase [Persephonella marina EX-H1]
 gi|225645477|gb|ACO03663.1| diguanylate cyclase [Persephonella marina EX-H1]
          Length = 338

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/216 (30%), Positives = 114/216 (52%), Gaps = 15/216 (6%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN----RISQLSRI 106
           +Y+     Y  + +  EN+S  I+  +I+ ++ ++   IL  + I+      ++   +  
Sbjct: 126 WYMANEITYRYQKLSEENISYFIVIFSINGIITFLVLGIL--VIIAKKEVKGKLEFQAHY 183

Query: 107 DCLSGLLNHSAFIS---SLGSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+ +LN  +FI+   S+ + N+    S++  DID FK+IND +GH VGDKV+  + D 
Sbjct: 184 DPLTKVLNRRSFIAIYNSIINRNDIFPASLMIMDIDDFKKINDTYGHNVGDKVLKKIVDV 243

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +           R GGEEF      +   +A ++A  +R++IEN +       + ++T+S
Sbjct: 244 IKSNIRKKDLFVRWGGEEFIIFFPETDIDQARVVAEKIRRLIENIKFE----ENFNVTVS 299

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            GI E    E +  +I RAD+ALY AKK+ +NRV  
Sbjct: 300 IGITELKKGEFLVEVIKRADRALYRAKKNNKNRVEI 335


>gi|165932901|ref|YP_001649690.1| response regulator PleD [Rickettsia rickettsii str. Iowa]
 gi|165907988|gb|ABY72284.1| GGDEF family protein [Rickettsia rickettsii str. Iowa]
          Length = 450

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 89/191 (46%), Gaps = 13/191 (6%)

Query: 79  SLLLGYISGSILKELFISYNR--ISQ---LSRIDCLSGLLNHSAFISSLGSYNEK----- 128
           S LL  I   + ++ +    R  + Q   L+  D L+GL N   F   L    EK     
Sbjct: 258 SELLARIRTQLRRKQYQDNLRNDLEQSVNLAVKDGLTGLFNRRYFDIHLKQIIEKTNKES 317

Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             L ++  DID FK +ND +GH  GDKV+  +S  L         + R GGEEF      
Sbjct: 318 IKLCLLMCDIDNFKHVNDTYGHQAGDKVLTIVSRILKNTLRVTDLIARFGGEEFTILLTD 377

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALY 245
               +A   A  +R  IE    +I      +  TIS G+ +   +E I + I RAD+A+Y
Sbjct: 378 IDISKAIETAERVRVKIEYMNFHIEDQIEPLKTTISIGVTKYKKEESIESFIERADKAMY 437

Query: 246 VAKKSGRNRVV 256
            AK +G+N+VV
Sbjct: 438 EAKTTGKNKVV 448


>gi|82702630|ref|YP_412196.1| diguanylate cyclase [Nitrosospira multiformis ATCC 25196]
 gi|82410695|gb|ABB74804.1| diguanylate cyclase (GGDEF domain) [Nitrosospira multiformis ATCC
           25196]
          Length = 360

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 96/177 (54%), Gaps = 11/177 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----------LSIVFFDIDYF 139
           L +L    +R+ + +  D L+G++N+   + SL  + ++          L ++  D+D+F
Sbjct: 180 LDKLRAEASRLQERTWTDELTGVMNYRKLMESLEHHVQRAERRGQERSSLCLIMSDLDFF 239

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND +GH VGD V+  L+ ++         +GR GGEEF      +  + A ++A  +
Sbjct: 240 KKINDTYGHMVGDLVLQHLARRIKSATRDFDMIGRFGGEEFVVIMADTDLELAKVIAERI 299

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R  + ++  +I    +IH+TIS G+A     E   +++ RAD A+Y AK+ GRN VV
Sbjct: 300 RLGVMSTPFHIKK-FNIHVTISLGVAMLKPGESRESLLERADAAMYEAKRRGRNCVV 355


>gi|322714911|gb|EFZ06482.1| hypothetical protein SCA50_1997 [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 381

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 127/266 (47%), Gaps = 28/266 (10%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY------GLEYILVE----- 67
           + S+  + F++++ + F+  ++ ++ +  +   Y  L           L  +L       
Sbjct: 115 MWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLWLTALLASVRLNQ 174

Query: 68  --NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDCLSGLLNH 115
             N+  +++ +T++ +L Y   I      E ++ Y        R+  ++  D L+G  N 
Sbjct: 175 YVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANR 234

Query: 116 SAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MF 171
            +  S LG      E  +++  D+DYFK  ND++GH  GD  +A ++  +     TP   
Sbjct: 235 RSMESFLGDALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVACVVKRSIRTPADL 294

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHK 230
           V R GGEEF      SS  EAA++A  ++  +  + +  ++   S  +T+S GI      
Sbjct: 295 VARYGGEEFVVVLPSSSLNEAALVAQRIQTNLRETALPHAASAVSETVTVSMGITLSTAG 354

Query: 231 EPISTIIYRADQALYVAKKSGRNRVV 256
           + ++ II RAD+ALY AK+ GRNR V
Sbjct: 355 DTVTGIIARADEALYRAKQQGRNRWV 380


>gi|319764707|ref|YP_004128644.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|317119268|gb|ADV01757.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
          Length = 921

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFK 140
           + + E       I + +  D L+ L N   F   L    +        L++VF D+DYFK
Sbjct: 467 ADVTEARRREASIWRQAHYDHLTQLPNRQMFQQDLQRSMDSARASDLPLALVFLDLDYFK 526

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           ++ND FGH +GD+++  ++ +L     +   V RLGG+EF          ++A  +   +
Sbjct: 527 EVNDTFGHDMGDELLRQVARRLQSCVRSSDQVARLGGDEFTLILRDLKRLEDAPAICRKV 586

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +   Q    SG ++H+++SAG+       +   T++  AD A+Y AK+ GRN+   F
Sbjct: 587 LHAVA--QPYELSGSTVHVSVSAGVTFYPRDGDDGVTLLKHADLAMYAAKEQGRNQFCEF 644

Query: 259 SDIENNTC 266
           +       
Sbjct: 645 APTMEQEA 652


>gi|289649229|ref|ZP_06480572.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 527

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 92/205 (44%), Gaps = 20/205 (9%)

Query: 81  LLGYISGSILKE---------LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124
           L+G+I   I  E         L      +  ++  D L+GL N   F             
Sbjct: 301 LIGHIHSRIRAEDQLLDSQAALIQLNQHLEFIASEDKLTGLANRRRFDQFLEVEFKRARR 360

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAA 183
               LS++  D D+FK+ ND++GH  GD+ +  L+  +      P     R GGEE A  
Sbjct: 361 ERSLLSLILIDADHFKRYNDHYGHLAGDECLVALARVVEQCIRRPGDVAARYGGEEIAVV 420

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRA 240
             G+ E  A  +A ++ + I + QI   + P   +T+S G+A     +      ++I  A
Sbjct: 421 LPGTDESSARQVAENILQAIRDEQIEHPASPFGIVTVSLGVATFVGTDRQLDQRSLIELA 480

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D+ALY AK  GRNRV   S+I  +T
Sbjct: 481 DRALYAAKSQGRNRVNVASEIATST 505


>gi|317052049|ref|YP_004113165.1| diguanylate cyclase [Desulfurispirillum indicum S5]
 gi|316947133|gb|ADU66609.1| diguanylate cyclase [Desulfurispirillum indicum S5]
          Length = 342

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 87/185 (47%), Gaps = 11/185 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQIND 144
           ++ L   Y  + Q +R D L+GLLN       L       +   L +V  DID FK+IND
Sbjct: 157 MEALRQRYEELGQRARRDFLTGLLNRQVLEEMLQEICLGEHRHPLGLVAMDIDNFKEIND 216

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD V+   + +L         V R GGEEF      ++      LA  +R+ I 
Sbjct: 217 TYGHLCGDSVLKLFARKLGEYVRRDDLVFRFGGEEFIVILPQTNLAATYQLAEHIRRHIA 276

Query: 205 NSQINISSG------PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
               ++ +G       S+ +T S G A     E   +++ RADQA+Y +K++GRNR    
Sbjct: 277 EHVFHLEAGGQLSADISLRLTASFGAASHVAGESHESLLARADQAMYASKRAGRNRTTIA 336

Query: 259 SDIEN 263
           +  E+
Sbjct: 337 AHPEH 341


>gi|146306389|ref|YP_001186854.1| diguanylate cyclase [Pseudomonas mendocina ymp]
 gi|145574590|gb|ABP84122.1| diguanylate cyclase [Pseudomonas mendocina ymp]
          Length = 508

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 8/195 (4%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSL 122
           SL +  +  +L+   +   +         RI+ L+  D L+ L N   F           
Sbjct: 313 SLYLNLLICTLITLAVLLLVYLATRRYQRRIAALATTDSLTELPNRRGFDILAAQALQEA 372

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
              +  L  V  D+D FK +ND  GH  GD V+   + QL         + R GGEEF  
Sbjct: 373 QRDSSPLCAVLLDLDNFKALNDAHGHLAGDDVLRRFARQLRGSLRQADILCRWGGEEFIL 432

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
               +    A  LA  LR+     +  + +G ++ +T+S G+++    E +  ++ R D+
Sbjct: 433 LLKNTDRNAAHELAEKLRQQCAEQRYPV-AGKALQVTVSLGLSQWQEGETLHDLLGRTDR 491

Query: 243 ALYVAKKSGRNRVVC 257
           ALY AK++GR+RV  
Sbjct: 492 ALYRAKQAGRDRVCV 506


>gi|92113441|ref|YP_573369.1| diguanylate cyclase [Chromohalobacter salexigens DSM 3043]
 gi|91796531|gb|ABE58670.1| diguanylate cyclase [Chromohalobacter salexigens DSM 3043]
          Length = 608

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 8/173 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFG 147
               ++ + S  D L+GL N      +L             L ++  DID+FK IND++G
Sbjct: 435 RLREQLEEASIRDALTGLYNRRFLDETLARELARAERQAVPLCVLMLDIDHFKPINDDYG 494

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD+ +  +++ L         V R GGEEF     G+    A    + LR+ +    
Sbjct: 495 HALGDRALVAVAELLNAHVRRDDIVCRYGGEEFVIIMPGAGLDAAQRRGDHLRRCVSALD 554

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  +    I +T+S G+A    H +    +++ AD ALY AK+ GRNR+   S
Sbjct: 555 VEANVPAPIRLTVSLGLACYPQHGDNAEHLLHSADMALYEAKQGGRNRLTIAS 607


>gi|298487368|ref|ZP_07005416.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298158171|gb|EFH99243.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 527

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 92/205 (44%), Gaps = 20/205 (9%)

Query: 81  LLGYISGSILKE---------LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124
           L+G+I   I  E         L      +  ++  D L+GL N   F             
Sbjct: 301 LIGHIHSRIRAEDQLLDSQAALIQLNQHLEFIASEDKLTGLANRRRFDQFLEVEFKRARR 360

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAA 183
               LS++  D D+FK+ ND++GH  GD+ +  L+  +      P     R GGEE A  
Sbjct: 361 ERSLLSLILIDADHFKRYNDHYGHLAGDECLVALARVVEQCIRRPGDVAARYGGEEIAVV 420

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRA 240
             G+ E  A  +A ++ + I + QI   + P   +T+S G+A     +      ++I  A
Sbjct: 421 LPGTDESSARQVAENILQAIRDEQIEHPASPFGIVTVSLGVATFVGTDRQLDQRSLIELA 480

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D+ALY AK  GRNRV   S+I  +T
Sbjct: 481 DRALYAAKSQGRNRVNVASEIATST 505


>gi|260893212|ref|YP_003239309.1| diguanylate cyclase/phosphodiesterase [Ammonifex degensii KC4]
 gi|260865353|gb|ACX52459.1| diguanylate cyclase/phosphodiesterase [Ammonifex degensii KC4]
          Length = 469

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 7/170 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFG 147
              Y  +  L+  D L+GL N     + L           + +++F D+D FK +ND  G
Sbjct: 39  LARYRSLRFLATHDFLTGLPNRYLLEARLKKALARARRGHQGALLFLDLDNFKLVNDTLG 98

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+ + F+ + L         + R+GG+EFA    G   +EA  +A  LR++++ + 
Sbjct: 99  HGAGDRALRFVVELLRRNLRKGDLLARVGGDEFAVLLEGVELEEARAVAERLRQVVDETP 158

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +  G + ++ +S GI     K  +   + RAD ALY AK+ G N  V 
Sbjct: 159 V-VIDGHTFNLGLSIGITPLDGKMDVQKALGRADAALYAAKERGGNACVV 207


>gi|330942360|gb|EGH44981.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 358

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 10/220 (4%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
              + +    L P   L   + +  + + + +T  + +G++S  +  +L+   N + ++S
Sbjct: 125 ALGVLISLAALDPVVNLHGNMAQIYACLPVLVTYPIFIGWLSHQVTLKLWEHRNILRKVS 184

Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           R D L+GLLNH A+   L        +  ++  I   DID+FK IND +GH +GD V+  
Sbjct: 185 RTDSLTGLLNHGAWKDLLDLEYASSQNAYQECVIALIDIDHFKVINDTYGHLMGDTVLQS 244

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +S+ L         +GR GG+EF      +   +A  +   LR  I+     +     + 
Sbjct: 245 ISEALTENLRDSDLIGRCGGDEFCVILPDTCLLQAKEILERLRLAIDEMTYTLH--CDLK 302

Query: 218 ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
           +++S GIA    +    S+ ++ AD+ALY+AK +GRNRV 
Sbjct: 303 VSLSIGIAAYSPEMPDASSWLHEADKALYLAKSTGRNRVA 342


>gi|327189763|gb|EGE56907.1| sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 542

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 84/183 (45%), Gaps = 10/183 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           +I  +L  +  R+  L+  D L+GL N   F  +L   +         L+++  D+D FK
Sbjct: 360 AIEDQLQEANRRLQALAEQDALTGLANRRYFDEALLREHAHALSQRTNLALLIIDVDRFK 419

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GHP GD+ +  +   +            R GGEEFA    G+   EAA +A  +
Sbjct: 420 SFNDRYGHPSGDECLKRIGGAIKDTIRRAGDVAARYGGEEFAVLLPGADGSEAASVAELI 479

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVC 257
           R  + +  I   + P+   TIS G+             ++  AD+ALY AK+ GRN VV 
Sbjct: 480 RLAVLHLGIEHEASPNGIATISVGVTGLTGDSSCGPEALVREADRALYRAKERGRNTVVI 539

Query: 258 FSD 260
             D
Sbjct: 540 AHD 542


>gi|300715158|ref|YP_003739961.1| HmsT protein (Hemin storage system protein) [Erwinia billingiae
           Eb661]
 gi|299060994|emb|CAX58101.1| HmsT protein (Hemin storage system protein) [Erwinia billingiae
           Eb661]
          Length = 366

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 76/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE 67
            L  W  ++K    F      +  S+    FI+ +    ++  F +   P      +L  
Sbjct: 83  LLWTWQIYDKYERVFYFDGSFLVISLISVFFISAIALGDHLLAFCLHTAPPSVAVLVLDH 142

Query: 68  NLSLVIISITISL-LLGY------------ISGSILKELFISYNRISQLSRIDCLSGLLN 114
             + ++I  TI+L L+G+             +  ++++L+      S LS +D L+GL N
Sbjct: 143 GQNTLLILFTIALPLIGFTLHHLMQRRRDNFTLRLMRQLYEEKETYSDLSMLDPLTGLYN 202

Query: 115 HSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
                + L +  E  +    ++  DID FK  NDN+GH +GD+ +A +S  +     +  
Sbjct: 203 RRGLKNRLENILENHAGSHFVLLLDIDNFKAYNDNYGHAMGDQALARVSVAIRDAVRSRD 262

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAERC 228
            V R GGEEF       +E  A  L+  +R+ + N +I       +  H+TISAG A   
Sbjct: 263 IVTRYGGEEFLVLLTNVNESIARKLSERIRQYVLNLEIPHLFNDRVATHVTISAGFAPLI 322

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             E   T +  AD+ALY+AK  GRN ++ F DI
Sbjct: 323 E-EDFDTALANADRALYLAKGRGRNTILSFEDI 354


>gi|255918034|pdb|3IGN|A Chain A, Crystal Structure Of The Ggdef Domain From Marinobacter
           Aquaeolei Diguanylate Cyclase Complexed With C-Di-Gmp -
           Northeast Structural Genomics Consortium Target Mqr89a
          Length = 177

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 60/168 (35%), Positives = 88/168 (52%), Gaps = 9/168 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++++LS  D L+GLLN   +             Y +  S+V FDID+FK +ND +GH  
Sbjct: 2   EQLAKLSXTDRLTGLLNRGTWENLVDAEYERFRRYGQATSLVXFDIDHFKPVNDTYGHLA 61

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+VI   +D            GR GGEEF      +  + A ++   +R+ IE S ++ 
Sbjct: 62  GDEVIRHTADVTRNNIRQSDSAGRYGGEEFGIILPETDAESARVICERIREAIEKSTVST 121

Query: 211 SSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
           S+G  I  T+S GIA+     E       +AD+ALY AK+SGRN+VV 
Sbjct: 122 SAG-DIQYTVSXGIAQLTETPENYXQWXQKADEALYKAKESGRNKVVV 168


>gi|291614011|ref|YP_003524168.1| diguanylate cyclase with GAF sensor [Sideroxydans lithotrophicus
           ES-1]
 gi|291584123|gb|ADE11781.1| diguanylate cyclase with GAF sensor [Sideroxydans lithotrophicus
           ES-1]
          Length = 379

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 90/182 (49%), Gaps = 13/182 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           SI  E  +++ R+  +   D L+G+ N     +           Y   LS +F DID FK
Sbjct: 174 SICLENSLNHERLKLVGLTDPLTGIYNRRYLETRCQEEAAHVRRYRSPLSCMFLDIDKFK 233

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND+FGH +GDK++  ++ Q+     +   + R GGEEF      +  + A  +A  +R
Sbjct: 234 RINDSFGHNIGDKILCSVTAQIKSQLRSNDVLARYGGEEFVVLLPQTGIRGACDIAERIR 293

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPIST------IIYRADQALYVAKKSGRNR 254
           + +      I     + +TIS G+A+               ++  AD+ALY+AK+SGRN+
Sbjct: 294 RTVAEQAFQIGREDELKVTISIGVAQAPVDADGDERTVAHQLLAAADEALYLAKESGRNK 353

Query: 255 VV 256
           VV
Sbjct: 354 VV 355


>gi|222053163|ref|YP_002535525.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Geobacter sp. FRC-32]
 gi|221562452|gb|ACM18424.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Geobacter sp. FRC-32]
          Length = 439

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 86/182 (47%), Gaps = 11/182 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             + E   +Y+R+  ++  D L+ L N   F   LG        YN+  ++++ D+D FK
Sbjct: 253 RDISERKQAYDRLQYMANFDPLTSLPNRILFFDRLGQTVSHARRYNQMFALLYVDLDRFK 312

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
            +NDN GH VGD ++  ++ ++         V R+GG+EF       + + +A  +A  +
Sbjct: 313 PVNDNLGHDVGDMLLREVAGRMTGCIRDADTVARMGGDEFCIILSKIAGKGDAETVAGKI 372

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
              ++        G    I  S GI+      +    ++  AD A+Y AK++GRNR   F
Sbjct: 373 IAALDVD--FCLRGHQCSIGASIGISIFPADSDDPQLLLKMADMAMYNAKENGRNRFCLF 430

Query: 259 SD 260
           +D
Sbjct: 431 AD 432


>gi|209519031|ref|ZP_03267839.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. H160]
 gi|209500543|gb|EEA00591.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. H160]
          Length = 1028

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 84/187 (44%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + EL     ++   +  D L+ L N +     L         ++  +++VF D+D FK 
Sbjct: 580 DVTELIRYQEQLEYQANYDGLTRLPNRNLLRDRLEHALVVAQRHHAGVAVVFLDLDGFKN 639

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDLR 200
           +ND+ GH VGD+++  ++++L     T   V R GG+EF        ++++ I     +R
Sbjct: 640 VNDSLGHSVGDRLLGVVAERLARCSRTSDTVARHGGDEFVIVMTDVVDEQSLIAWMERVR 699

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I   +     G  +++  S G +      +   T++ +AD A+Y AK  GRN    + 
Sbjct: 700 ASIA--EPVWLDGTELYVGCSMGASLFPQDGDDAETLMKKADVAMYRAKDMGRNTYQFYQ 757

Query: 260 DIENNTC 266
              N + 
Sbjct: 758 PEMNASA 764


>gi|156740992|ref|YP_001431121.1| diguanylate cyclase with GAF sensor [Roseiflexus castenholzii DSM
           13941]
 gi|156232320|gb|ABU57103.1| diguanylate cyclase with GAF sensor [Roseiflexus castenholzii DSM
           13941]
          Length = 792

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 111/258 (43%), Gaps = 22/258 (8%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSI--FIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           +W   E        H  +    +   I   I T I      L  + +   +   +    +
Sbjct: 542 VWSAVETRQSVIRHHVMLKAGRVTHHIPSVIGTPIIAGGKALGVLAVYHLHRQRFFGEHD 601

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121
            S++ I       +G  +G  +    + +    +L+  D L+GL N   F       +  
Sbjct: 602 RSMLEI-------VGQQTGVAITNAHL-FTETQRLATTDHLTGLFNRHHFFALAPRELER 653

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              Y+  L+++  D+DYFK IND FGH  GD V+  ++ Q+         + R GGEEF 
Sbjct: 654 ARRYHHPLALLVIDVDYFKTINDTFGHSAGDVVLRSVAKQMQRELRDADILARFGGEEFI 713

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC---HKEPISTIIY 238
           A    ++   A  +A  LR  +    + +   P + +TIS G A        + + T+I+
Sbjct: 714 ALLPETNRAGALRVAERLRAAVAG--VPLLREPPVQVTISIGCAVLDSVSEHDRLDTLIH 771

Query: 239 RADQALYVAKKSGRNRVV 256
           RAD+ALY+AK  GRN+V 
Sbjct: 772 RADRALYIAKSRGRNQVA 789


>gi|149921740|ref|ZP_01910187.1| diguanylate cyclase (GGDEF domain) [Plesiocystis pacifica SIR-1]
 gi|149817391|gb|EDM76864.1| diguanylate cyclase (GGDEF domain) [Plesiocystis pacifica SIR-1]
          Length = 752

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 84/168 (50%), Gaps = 9/168 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y  + + +  D L+GL NH AF   L           +K SI+  DID+FK +ND +GHP
Sbjct: 580 YQSMEERATTDGLTGLTNHRAFQERLEQLHALSERTGQKFSIILTDIDHFKSVNDTYGHP 639

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD V+  ++            V R GGEEF      +  + AA+ AN LR+ I    I 
Sbjct: 640 VGDAVLKRVAAIFTRRARKVDIVARYGGEEFVLVLPDTDAEGAAVFANRLREEIAAQTIT 699

Query: 210 ISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
             +G S  +T+S G+AE          +I  ADQALY  K+ GRNRV 
Sbjct: 700 SDNG-SFSVTLSLGVAEFPRDSTKRHELIELADQALYYCKEHGRNRVT 746


>gi|187922673|ref|YP_001894315.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phytofirmans PsJN]
 gi|187713867|gb|ACD15091.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phytofirmans PsJN]
          Length = 1036

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 87/187 (46%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + +L     ++   +  D L+ L N +     L         +++ +++VF D+D FK 
Sbjct: 588 DVTDLMRYQEQLEYQANYDSLTRLPNRNLLRDRLQHALIVAQRHHKGVAVVFMDLDGFKN 647

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDLR 200
           +ND+ GH VGD+++  ++++L     T   V R GG+EF      + ++++ I     +R
Sbjct: 648 VNDSLGHSVGDRLLGVVAERLARCTRTSDTVARHGGDEFVIVMTDTVDEQSLIAWMERVR 707

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I  S+     G  +++  S G +      E   T++ +AD A+Y AK  GRN    + 
Sbjct: 708 ASI--SEPVWLDGTELYVGCSMGASLFPQDGEDAETLMKKADLAMYRAKDMGRNTFQFYQ 765

Query: 260 DIENNTC 266
              N + 
Sbjct: 766 PEMNASA 772


>gi|213967857|ref|ZP_03396003.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas syringae pv. tomato T1]
 gi|213927200|gb|EEB60749.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas syringae pv. tomato T1]
          Length = 719

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 96/197 (48%), Gaps = 14/197 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++          ++ L +
Sbjct: 261 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 317

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQ 190
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF     G    +
Sbjct: 318 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 377

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           +AA +A  L + +   +    +G  I +  S GIA        +  ++  AD A+Y AK+
Sbjct: 378 QAAKIAEKLIERVSGRRQ--VNGVDITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKR 435

Query: 250 SGRNRVVCFSDIENNTC 266
           +GR +   +    N   
Sbjct: 436 AGRQQYRFYDQNMNGRA 452


>gi|190573427|ref|YP_001971272.1| putative GGDEF family signalling protein [Stenotrophomonas
           maltophilia K279a]
 gi|190011349|emb|CAQ44964.1| putative GGDEF family signalling protein [Stenotrophomonas
           maltophilia K279a]
          Length = 481

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 8/181 (4%)

Query: 87  GSILKELFISYNRISQL-SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
            +I   + + + RI +L +  D L+ LLN           I          S++  D+D+
Sbjct: 287 AAIRTLMTLLFERIGELDAGSDALTNLLNRRFLPTVLRREIELATRNRTPFSLLLLDLDH 346

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND  GH  GD+ +  ++  L  +     ++ R GGEEF    + +SE +A ++A  
Sbjct: 347 FKAINDGHGHDAGDRALQHVAGLLGQLTRGSDYLFRYGGEEFVVVLVAASESQATVIAES 406

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           LR+ I  S + +++G  + +T S G+A          ++ RAD A+Y AK+SGRNRVV  
Sbjct: 407 LRRQIAQSPVALANGQVLELTASIGVAGHDGHPDYERLMARADAAMYEAKRSGRNRVVVA 466

Query: 259 S 259
           S
Sbjct: 467 S 467


>gi|171057980|ref|YP_001790329.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Leptothrix cholodnii SP-6]
 gi|170775425|gb|ACB33564.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptothrix cholodnii SP-6]
          Length = 568

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 87/207 (42%), Gaps = 18/207 (8%)

Query: 70  SLVIISITISLLL---GYISG-----SILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           SLV +S TIS L    G I G       + E   +   I   +  D L+ L N   F   
Sbjct: 97  SLVNVSATISPLHDSEGRIVGASKIARDITERIQAERTIWLQANHDTLTSLPNRRHFQER 156

Query: 122 L-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L             L+++F D+D FK +ND  GH  GD ++   + ++         V R
Sbjct: 157 LTLELARARRMQRHLAVMFIDLDRFKDVNDTLGHQAGDDLLVQAAQRIRAAVREIDTVAR 216

Query: 175 LGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           +GG+EF        +  E   +A  +   +      +    S+ I+ S G+A      E 
Sbjct: 217 MGGDEFTILLPDLVAGDEVEPIARRVNLCLFK-PFTLDGQTSVQISGSIGVALFPQDGET 275

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFS 259
              ++  ADQA+Y +K+ GRN+   F+
Sbjct: 276 ADVLLMHADQAMYESKRLGRNQARHFA 302


>gi|156743249|ref|YP_001433378.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Roseiflexus
           castenholzii DSM 13941]
 gi|156234577|gb|ABU59360.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Roseiflexus castenholzii DSM 13941]
          Length = 900

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 91/192 (47%), Gaps = 13/192 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDID 137
           S + +    +   R+   +  D L+GL N S F+  L           +   +++F D+D
Sbjct: 454 SQTDINARKLVEQRLLHEALHDSLTGLANRSCFMDRLEHVVARTRRGASSPFAVLFLDLD 513

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LA 196
            FK IND+ GH VGD+++  ++ +L         + RLGG+EFA      SE +AA+ +A
Sbjct: 514 RFKLINDSLGHVVGDQLLIAIARRLERCLRPGDTLARLGGDEFAVLLEDLSEPQAALTVA 573

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNR 254
             + +++E  +    +G  +  + S GIA          + ++  AD A+Y AK  GR+R
Sbjct: 574 ERILRLLE--EPFHLAGHEVFSSASIGIALNDSTRYHSPADVLRDADTAMYHAKMEGRSR 631

Query: 255 VVCFSDIENNTC 266
              F    ++  
Sbjct: 632 YAVFHSAMHDRA 643


>gi|34556843|ref|NP_906658.1| hypothetical protein WS0414 [Wolinella succinogenes DSM 1740]
 gi|34482558|emb|CAE09558.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 431

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 13/174 (7%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L     ++  ++  D L+G+ N   F   L          N   S++  D+D FK IND 
Sbjct: 263 LEKQNQKLEHIAHTDTLTGVWNRYKFNKILRQEIKCAKSSNHPFSLMLLDVDRFKTINDT 322

Query: 146 FGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            GH  GD+V+  ++  L   +      + R GGEEF   A G    +A  LA  LR  IE
Sbjct: 323 HGHQFGDRVLKAITSTLKRQLKHKEAMIARWGGEEFIVLAQGYRLAQALELAERLRAAIE 382

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +       +I IT S G+ E   ++ + T++ RAD ALY AK+SGRNR++ +
Sbjct: 383 GMEFE-----NIPITSSFGVTEFSPEDELDTLVRRADLALYTAKESGRNRIISY 431


>gi|120554090|ref|YP_958441.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120323939|gb|ABM18254.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 308

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 59/169 (34%), Positives = 89/169 (52%), Gaps = 8/169 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I Q +  D L+G+ N  A   +L         +    S++  D+D+FK INDN GH VGD
Sbjct: 140 IEQTALTDSLTGIGNKRALDEALQRASAMADRHGAPWSLILCDLDHFKLINDNHGHVVGD 199

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++A  +++L         V R GGEEFA     ++EQEA  +A+ +R  IE+ +++   
Sbjct: 200 HILARTAEKLEQALRNSDTVYRFGGEEFAILLPHTNEQEARDVADRIRGAIESIRVDGGE 259

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            P + +T S G+A     E     + RAD+ALY AK +GRN    F+ I
Sbjct: 260 TP-LTVTASCGVAMHLTDEQPEQWLARADEALYRAKAAGRNCTRVFASI 307


>gi|323489110|ref|ZP_08094344.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Planococcus donghaensis MPA1U2]
 gi|323397233|gb|EGA90045.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Planococcus donghaensis MPA1U2]
          Length = 658

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 88/185 (47%), Gaps = 10/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
             + +   S  +IS L  +D L+GL N   +   L S  ++        ++++ D+D FK
Sbjct: 219 RDITDQRKSEEKISNLVYLDSLTGLPNRRLYNDRLESTIDQALDNKTTHTVLYLDLDQFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GH +GD+++  +S ++         + RLGG+EF      S+  +A  +A ++ 
Sbjct: 279 LVNDTYGHQIGDQLLIEVSQRIKSCISKADTLARLGGDEFILLLPNSNYTKAEAVARNIL 338

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++ ++     +   + IT S G +          T++  AD A+Y  K+ G+N    F+
Sbjct: 339 NVLAHA--FSLNDEEVFITPSIGASLFPADGTDSETLVKNADIAMYRVKEEGKNNFQFFT 396

Query: 260 DIENN 264
              N+
Sbjct: 397 SEMND 401


>gi|300311453|ref|YP_003775545.1| signal transduction containing PAS/GGDEF/EAL domains protein
           [Herbaspirillum seropedicae SmR1]
 gi|300074238|gb|ADJ63637.1| signal transduction containing PAS/GGDEF/EAL domains protein
           [Herbaspirillum seropedicae SmR1]
          Length = 683

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 15/195 (7%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVF 133
           L+GY++   + E   +   I  L+  D L+GL N +         +      N    ++F
Sbjct: 223 LIGYLN--DITERKNAEKLIHHLAYYDALTGLPNRTLLTRTVDQALEEARHENLHGCVMF 280

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D++ FK IND  GH  GD ++  ++ +L         V RLG +EFA A  G  +   A
Sbjct: 281 IDLNRFKPINDTLGHVAGDMLLVEVAMRLRRALREQDVVARLGADEFAVALFGIDKDSPA 340

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252
            +A  L  + ++       G  + +  S G++          T++  AD A+Y AK+ G 
Sbjct: 341 YVAQKLLALFDD--PFFIDGHELRVGASIGVSLYPENATDTETLLRLADIAMYRAKQGGE 398

Query: 253 NR---VVCFSDIENN 264
           N      C+S+  N 
Sbjct: 399 NNEGGYACYSEEMNR 413


>gi|114564665|ref|YP_752179.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114335958|gb|ABI73340.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 318

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 79/273 (28%), Positives = 128/273 (46%), Gaps = 29/273 (10%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60
           +     D  + WL H   +ES     F++    F S      +F       +    P  G
Sbjct: 57  LFEKFPDLPATWLKH--KMES----VFLLKNRTFISWEQRPYVFQ------FKNYRPVTG 104

Query: 61  LEYILVENLSLVIISIT------ISLLLGYISGSILK--ELFISYNRISQLSRIDCLSGL 112
               + +N++L+ ++        IS+++  ++   +   +L  +  ++ QLS+ D L+ L
Sbjct: 105 RADFMYQNITLLPLASLTGQITHISIIVYDVTDIAVNKLQLKAANEQLEQLSQTDGLTLL 164

Query: 113 LNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N   + S +         Y +  S+V  DID FK+IND +GHP GDKVI  ++  L   
Sbjct: 165 HNRRHWQSCMEKEFDRYSRYGDAASLVMIDIDNFKRINDEYGHPAGDKVIQHIAYLLKQA 224

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                  GR GGEEF      ++ +EA      LRK IE S++   +   I +T+S GI 
Sbjct: 225 LRDTDCAGRYGGEEFGVVLSKTTAEEALNFTERLRKRIEASEVAFEN-RLIKVTVSLGIN 283

Query: 226 ERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           +   + +  ST +  AD+ALYVAK+ GRN+ V 
Sbjct: 284 DLDSEIDNSSTWLSGADKALYVAKQEGRNKSVI 316


>gi|320105383|ref|YP_004180973.1| diguanylate cyclase [Terriglobus saanensis SP1PR4]
 gi|319923904|gb|ADV80979.1| diguanylate cyclase [Terriglobus saanensis SP1PR4]
          Length = 454

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 10/176 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
            EL      +S+LS  D L+GL N   F S L           + ++++  D+D+FKQ+N
Sbjct: 268 TELREVNALLSELSIRDGLTGLYNRRHFDSYLNLEWRRVPRVKKPMALLLLDVDHFKQLN 327

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D++GH  GD  +  ++  L            R GGEEFA    G   +    +A  +R  
Sbjct: 328 DHYGHQYGDDCLRDIARILETQPRRASDLAARFGGEEFAVLLPGCDLEGGLEVAERIRVA 387

Query: 203 IENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVV 256
           I  +     S P   +T+S G+        +    +I RADQA+Y AK +GRN V+
Sbjct: 388 IMETGGEHYSNPEKRMTVSIGVTCYLPATDDSPERMIGRADQAMYKAKGAGRNCVI 443


>gi|289676297|ref|ZP_06497187.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 659

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 96/197 (48%), Gaps = 14/197 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++          ++ L +
Sbjct: 254 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 310

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQ 190
           +F D+D FKQIND+ GH  GD+V+ ++++Q          + R+GG+EF     G    +
Sbjct: 311 LFMDLDGFKQINDSLGHEAGDQVLLWVAEQFKATMRPYDVLARIGGDEFTVVIDGLDYPE 370

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           +AA +A  L + +   +     G  I +  S GIA        +  ++  AD A+Y AK+
Sbjct: 371 QAAKIAEKLIERVSGRRQ--VDGVEITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKR 428

Query: 250 SGRNRVVCFSDIENNTC 266
           +GR +   +    N   
Sbjct: 429 AGRQQYRFYDQNMNGRA 445


>gi|51244082|ref|YP_063966.1| hypothetical protein DP0230 [Desulfotalea psychrophila LSv54]
 gi|50875119|emb|CAG34959.1| hypothetical protein DP0230 [Desulfotalea psychrophila LSv54]
          Length = 440

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 93/187 (49%), Gaps = 12/187 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFF 134
           +  +  S   E+ I  +R+   S  D L+GL N                 Y   +S++  
Sbjct: 259 ISRLMLSYEDEIEIYTSRLELFSITDSLTGLYNRFRLDDVFLYEVEQAQRYKRSVSLILL 318

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK +NDN GH VGD+VI  ++  L         VGR GGEEF      ++ + A I
Sbjct: 319 DLDKFKSVNDNHGHQVGDQVIREIARILKESTRVVDTVGRWGGEEFLVICAETTLEGAGI 378

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           LA+ +R  +E +   +       +T S G++     +  +++I RAD ALY AK++GRNR
Sbjct: 379 LADKIRVSVEENDFPVVG----SVTCSFGVSSFHPGDNEASMICRADVALYFAKENGRNR 434

Query: 255 VVCFSDI 261
           V CF ++
Sbjct: 435 V-CFEEL 440


>gi|326390488|ref|ZP_08212045.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Thermoanaerobacter ethanolicus JW 200]
 gi|325993456|gb|EGD51891.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Thermoanaerobacter ethanolicus JW 200]
          Length = 633

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 79/175 (45%), Gaps = 11/175 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFK 140
             + E       + + S  D L+ + N   F+  L    E         S+V FD+D+FK
Sbjct: 460 RDISERKRFEELLYRQSITDPLTNIYNRRFFMQMLEQEIERTKRNKKPFSLVMFDLDHFK 519

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND FGH  GD V+  ++D +        +  R GGEEF      +S  +A  LA +LR
Sbjct: 520 NINDRFGHAAGDIVLRSVADTVKGRIRKTDYFARWGGEEFIILLPETSLDDAVALAEELR 579

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           K I   ++         IT S G+ E    + I T++ R D  LY AK  GRN V
Sbjct: 580 KQISMMELEGID----KITASFGVTEYSDTDTIDTVLIRVDNMLYEAKGEGRNCV 630


>gi|283788392|ref|YP_003368257.1| hypothetical protein ROD_48701 [Citrobacter rodentium ICC168]
 gi|282951846|emb|CBG91556.1| putative membrane protein [Citrobacter rodentium ICC168]
          Length = 354

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 71/271 (26%), Positives = 119/271 (43%), Gaps = 22/271 (8%)

Query: 8   FLSIWLCHE--KNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPF------- 58
           F  +W  H   K      P    +  ++   +FI+++ F  NI  F +   P        
Sbjct: 78  FGGLWAVHVTLKYYALSLPDGSFLLIALLSILFISSISFANNIVAFTLHSLPSVLACLWL 137

Query: 59  ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112
               + L+ +    L +  I+I   +   Y   +  ++  L      ++ LS +D L+GL
Sbjct: 138 NGSQHALQILFFTALPMAGIAIQHVIQKRYDNFAQQLMFRLLAEKETLNDLSMLDPLTGL 197

Query: 113 LNHSAFISSLGSYNE----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N       L +  E    +  ++  DID+FK  ND++GH +GD+ +  +S  +     +
Sbjct: 198 YNRRGLQHRLETLLEIDSHERYVLLIDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 257

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226
              V R GGEEF      S  Q+A   A  +R+ + +  I      S+  ++TIS GIA 
Sbjct: 258 RDVVARFGGEEFMVLLTASDPQQARAAAERIRQSVYDLSIPHMFNESVATNVTISIGIAP 317

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +  +   I RAD+ALY AK  GRN ++ 
Sbjct: 318 LMER-DVEEAIGRADKALYQAKHLGRNHILV 347


>gi|88705562|ref|ZP_01103272.1| GGDEF family protein [Congregibacter litoralis KT71]
 gi|88700075|gb|EAQ97184.1| GGDEF family protein [Congregibacter litoralis KT71]
          Length = 981

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 96/223 (43%), Gaps = 25/223 (11%)

Query: 69  LSLVIISITISLLLGYISGSILK--------------ELFISYNRISQLSRIDCLSGLLN 114
           L + +I++ +SLL  Y S S  +              EL  +  R+   SRID L+G+ N
Sbjct: 755 LGVALIALLVSLLQRYQSRSARQREQQLRQLVDLRTEELRDALVRVEANSRIDSLTGVAN 814

Query: 115 HSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVF 166
                  L             +SI+  DID FKQ ND+ GH  GD  +  ++  +   + 
Sbjct: 815 RRHLEEHLNATWSMSRRTGTPVSILMLDIDLFKQYNDSLGHAAGDDCLRTIAQAIKGKLL 874

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIA 225
                + R GGEEF      +    A   AN + + +    +   +   S H+TIS G A
Sbjct: 875 REHDMLARYGGEEFVVVLYDTDAAGAVRTANRILECVRALALQHPASQVSEHVTISIGCA 934

Query: 226 ERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
               KE      +I  AD+ALY AK  GRNRV   ++   +T 
Sbjct: 935 SMGDKERDDPHRLIDLADKALYEAKAKGRNRVHSTAEESADTA 977


>gi|117925246|ref|YP_865863.1| diguanylate cyclase/phosphodiesterase [Magnetococcus sp. MC-1]
 gi|117609002|gb|ABK44457.1| ammonium transporter / diguanylate cyclase/phosphodiesterase
           [Magnetococcus sp. MC-1]
          Length = 1264

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 11/186 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + L E       I + +  D L+ L N   F   L            ++++ F D+D FK
Sbjct: 799 TDLTEQKAQEELIWRQANFDPLTSLPNRRLFQDRLHQALAQADRSAGRVALFFLDLDRFK 858

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
            IND  GH  GD+++   ++++     +   V RLGG+EF        + Q+ + +A  +
Sbjct: 859 PINDTMGHQAGDELLQKCAERINAAVRSSDTVARLGGDEFTVILPNIQNGQDLSRIAEGI 918

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            K +      + +G + +I+ S G+A      +    ++  AD ALY AK  GRN V  F
Sbjct: 919 IKTL-TEPFYLKAGEA-NISTSVGVAVYPDDSQDDEGLMRAADAALYQAKDHGRNNVQFF 976

Query: 259 SDIENN 264
           ++  N 
Sbjct: 977 TESLNQ 982


>gi|313500362|gb|ADR61728.1| Diguanylate cyclase [Pseudomonas putida BIRD-1]
          Length = 493

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 54/203 (26%), Positives = 99/203 (48%), Gaps = 14/203 (6%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI- 119
           + + L  NL+   I   I+L++  +  ++++    S      L+ +D L+GL N  +F  
Sbjct: 292 IRHALYLNLA---ICTMITLVVLALVHAMVRRHQAST---EALATLDSLTGLHNRRSFDL 345

Query: 120 ------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                       +  +  +  D+D+FK +NDN GH  GD+V+   ++ L         + 
Sbjct: 346 LAAQALREARRDSSPMVALLIDLDHFKALNDNHGHLAGDEVLRQFANVLQGSLRQSDILC 405

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEF      +  ++A  +A  +R+  E    +  + P + +T S G++     + +
Sbjct: 406 RWGGEEFIVLLREAEGRQAIEVAEKIRRRTEQLTFSYDNQP-LRLTTSIGLSSLQPGDTL 464

Query: 234 STIIYRADQALYVAKKSGRNRVV 256
             ++ RAD+ALY AK++GRNRV 
Sbjct: 465 HALLTRADRALYRAKQAGRNRVC 487


>gi|296390786|ref|ZP_06880261.1| hypothetical protein PaerPAb_21643 [Pseudomonas aeruginosa PAb1]
          Length = 827

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 11/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            +        R+S  +  D L+GL N   F       +  L   + + +++F D+D FK 
Sbjct: 359 DMTRERQYMARLSWQATHDALTGLTNRREFEYRLQIALERLERNSGRHALMFLDLDQFKL 418

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD+++  +   L         + RLGG+EF         ++A  +A+ LRK
Sbjct: 419 VNDTCGHAAGDELLRQVCTLLQQGLREGDTLARLGGDEFGILLENCPAEKAVEIADHLRK 478

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF-- 258
            +++     S G   + T+S G+         +   +  AD A Y+AK+ GRNRV  F  
Sbjct: 479 TVQDLHFTWS-GQPFNCTVSVGLVHLLPGISTLEEALRSADMACYMAKEKGRNRVQVFHQ 537

Query: 259 SDIE 262
            D+E
Sbjct: 538 DDVE 541


>gi|220910322|ref|YP_002485633.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7425]
 gi|219866933|gb|ACL47272.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Cyanothece sp. PCC 7425]
          Length = 877

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 94/191 (49%), Gaps = 12/191 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDID 137
           S S + E  ++  ++   +  D L+GL N + F+  L           N   +++F D+D
Sbjct: 421 SLSDISEQRLAQEQLMHDALHDPLTGLPNRTLFMDRLRQVIHHARRHRNYNFAVLFVDLD 480

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILA 196
            FK IND+ GH  GD ++  L+ +  +       V RLGG+EF        E +E+  +A
Sbjct: 481 RFKVINDSLGHLAGDTLLIELAHRFQIGLRPDDTVARLGGDEFVILLDDLLEVEESIRIA 540

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
           + ++ +++  Q  I +G ++  + S GIA +  H       +  AD A+Y AK +G +R 
Sbjct: 541 HRIQTLVQ--QPFIINGQTVFTSASIGIAPKDTHHHKPEHYLRNADIAMYRAKAAGGSRH 598

Query: 256 VCFSDIENNTC 266
           V F+ + + + 
Sbjct: 599 VLFTSVMHTSA 609


>gi|170701230|ref|ZP_02892199.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
 gi|170133859|gb|EDT02218.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
          Length = 508

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 102/234 (43%), Gaps = 22/234 (9%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI------LK 91
           ++A  IF    FL        YG+   L    S   I      L+  +S S+      L+
Sbjct: 282 WLAHAIFAGGFFLLS------YGVVQALQTTRSFSAIYRQ-EDLMSRLSESMARTDSALQ 334

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL  +  ++  ++  D ++G  N   FI  +               ++  D+D FK IND
Sbjct: 335 ELRRTNQKLEYMAATDPMTGASNRRQFIGQVEREIVRAERDGTPFCLLALDLDNFKNIND 394

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH +GD+V+  +  Q +        + R+GGEEF A       + A + A  +R  I 
Sbjct: 395 AYGHQIGDEVLRGVVRQCLEAIRPAGALARVGGEEFMALLPEMPLEGARMTAERVRSSIA 454

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S   +     + +T+S G+A+       +  ++   D+ LY AK+ GRNRVV 
Sbjct: 455 SSPFGL-DFKRVQVTVSVGVAQYGVDGSTVDALLRAVDERLYQAKRDGRNRVVA 507


>gi|78486276|ref|YP_392201.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78364562|gb|ABB42527.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2]
          Length = 775

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 92/199 (46%), Gaps = 17/199 (8%)

Query: 71  LVIISITISLLLGYIS------GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           + I+   I LLLG  +          K+L  +  ++S LS  D L+G+ N       L  
Sbjct: 577 MTIVLAPILLLLGVFAFFNRKLRQTQKKLQETNKQLSILSVTDHLTGVYNRQYLDQRLDS 636

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y    S++  D+D FK++ND FGH VGD+V+   +  +          GR GG
Sbjct: 637 EVERVNRYGSTFSVIMMDLDNFKKVNDKFGHLVGDEVLVVFAQTVEKEIRKIDIFGRWGG 696

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EEF      +    A  L   +RK IE+         +I  T+S G+AE    E I+  +
Sbjct: 697 EEFILICPETPLTHAIQLGKKVRKSIESQDYP----ENISQTVSLGVAEYQTGEAINDCL 752

Query: 238 YRADQALYVAKKSGRNRVV 256
            RADQ LY AK+ GRN+V 
Sbjct: 753 NRADQNLYKAKQLGRNQVC 771


>gi|328472216|gb|EGF43086.1| putative sensory box/GGDEF family protein [Vibrio parahaemolyticus
           10329]
          Length = 349

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/183 (34%), Positives = 95/183 (51%), Gaps = 9/183 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           S   + +  +   R+ QLS  D L+GLLN  AFIS+L          ++ LS +  DID+
Sbjct: 149 SVRDITKTHLLEQRLKQLSETDALTGLLNRRAFISNLDNAIIQHTKRSKTLSCLMIDIDH 208

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND  GH  GD VI  ++     V     F+GRLGGEEFA     ++  +A  +A  
Sbjct: 209 FKDINDRVGHFSGDHVITRIAHVCQGVIRGSDFIGRLGGEEFAVILTDTNAIQAYEVAER 268

Query: 199 LRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +R+ I+ + I       I  T+S G+AE    +     ++  AD+A+Y +K SGRN+V  
Sbjct: 269 IRQAIQAT-ICHVDDVEITTTVSIGVAELNSQQSNAKELLIEADKAMYYSKHSGRNQVTL 327

Query: 258 FSD 260
             +
Sbjct: 328 AYE 330


>gi|212639762|ref|YP_002316282.1| Response regulator with a diguanylate cyclase output domain
           [Anoxybacillus flavithermus WK1]
 gi|212561242|gb|ACJ34297.1| Response regulator with a diguanylate cyclase output domain
           [Anoxybacillus flavithermus WK1]
          Length = 421

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 57/181 (31%), Positives = 83/181 (45%), Gaps = 11/181 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDI 136
            +  + +  L     R   L+  D L+   N   F             Y    SI+ FDI
Sbjct: 243 LVVFTDITALEEESKRNEFLATKDPLTKTFNRLKFDEFFTREIHRAKRYKHTFSIILFDI 302

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK++ND +GH VGD V+  + + +         + R GGEEF   A  +S+  A  LA
Sbjct: 303 DHFKKVNDTYGHDVGDLVLVRMCEAISNRLRDCDILARWGGEEFIILAPATSQTGAYRLA 362

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR ++E            H+T S G+ E         ++ RAD+ALY AK++GRNRVV
Sbjct: 363 EALRHLVETVHFPTVG----HMTCSFGVCEYEQGMTKEQMVKRADEALYEAKRTGRNRVV 418

Query: 257 C 257
            
Sbjct: 419 V 419


>gi|167565960|ref|ZP_02358876.1| putative transmembrane transcriptional sensor regulator
           [Burkholderia oklahomensis EO147]
          Length = 490

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 13/196 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN------ 126
           + ++   ++  Y++ S+ ++   +   +++L+  D L+GL N  A   +L          
Sbjct: 291 VFALIFVVMSAYLAHSLWRK-STAEAALARLAGTDSLTGLHNRRALDETLEREWRRAVCG 349

Query: 127 -EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAA 184
              L+I+F DID+FK+ ND +GH VGD V+A +S  +          V R GGEEF    
Sbjct: 350 ERPLAILFVDIDHFKRYNDTYGHQVGDDVLATVSRCIAQQAARLGDVVARYGGEEFVVVL 409

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRA 240
             +    A ++A  +R  +    I         +T+S G+A           ++ ++  A
Sbjct: 410 PDTPRGGALVVAERVRMGVRMLGIEHEGSEVGFVTVSVGVAVWQPDGTPAPHVAAVVEAA 469

Query: 241 DQALYVAKKSGRNRVV 256
           DQALY AK  GRNRV 
Sbjct: 470 DQALYQAKAGGRNRVA 485


>gi|332531799|ref|ZP_08407684.1| hypothetical protein PH505_aa01050 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038775|gb|EGI75217.1| hypothetical protein PH505_aa01050 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 843

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 12/187 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--------KLSIVFFDIDYFKQ 141
           + E   +  ++  L+  D L+GL N   F   L    +        + ++++ D+D+FK 
Sbjct: 392 IHERKQAEIQLRHLAHHDPLTGLHNRYYFDQQLNKICQDKYTYDGIEHAVIYIDLDHFKI 451

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD V+  ++       G    V R+GG+EFA      +  +A ++A  +  
Sbjct: 452 INDSKGHHQGDIVLKEVAQLFKANIGDDHLVCRIGGDEFAVILTNMNLLDAHLIAEGVCS 511

Query: 202 IIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS- 259
            IE      S      I+ S G+ +        +  + +AD ALY+AK  GRN V C+S 
Sbjct: 512 AIEKHAFK-SEDQIYTISCSIGLTQITTQNNDPNECLKQADIALYIAKNLGRNLVHCYSK 570

Query: 260 -DIENNT 265
            D +NNT
Sbjct: 571 EDAQNNT 577


>gi|157147625|ref|YP_001454944.1| hypothetical protein CKO_03428 [Citrobacter koseri ATCC BAA-895]
 gi|157084830|gb|ABV14508.1| hypothetical protein CKO_03428 [Citrobacter koseri ATCC BAA-895]
          Length = 355

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 72/274 (26%), Positives = 128/274 (46%), Gaps = 25/274 (9%)

Query: 11  IWLCH---EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPF--------- 58
           +W  H   + N  + S +TF++  ++   +FI ++ F  NI  F     P          
Sbjct: 81  LWAWHITLKYNAMNHSDYTFLL-IALLCVLFIGSIAFANNIIAFTFHSLPSVLACLWLNG 139

Query: 59  --YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGLLN 114
             +G+  I +  L +  I+I   +   Y   +  ++ +L      ++ LS +D L+GL N
Sbjct: 140 SEHGIRIIYLMALPMAGIAIQHVIQKRYDDFAQQLMYKLLEERETLNGLSMLDPLTGLYN 199

Query: 115 HSAFISSLG-----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
                + L        +E+  ++  DID+FK  ND++GH +GD+ +  +S  +     + 
Sbjct: 200 RRGLQNKLNTLLALETHEEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRSR 259

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAER 227
             V R GGEEF      +  QEA   A  +R+ + + +I      S+  ++TIS GIA  
Sbjct: 260 DIVTRFGGEEFMVLLTATDPQEARTTAERIRQKVYDLKIPHMFNVSVATNVTISVGIAPL 319

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              + +   I +AD+ALY AK  GRN ++   ++
Sbjct: 320 L-GQDMEAAIVKADKALYEAKNLGRNNILASDEL 352


>gi|170727329|ref|YP_001761355.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169812676|gb|ACA87260.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
          Length = 628

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/204 (32%), Positives = 114/204 (55%), Gaps = 9/204 (4%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
            + LE       +++I+++ + L +   +   +++  +    ++ L+  D L+ L N   
Sbjct: 423 LHILEQNRYLQFTVIILAVIVILFVSLFAIKQVQKSKL----LAVLALTDHLTKLPNRRQ 478

Query: 118 FISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
             S    +    N KLS++ FD D+FK+INDNFGH +GDKV+  L++   ++      VG
Sbjct: 479 TYSEAEKHFSNNNSKLSLILFDADHFKKINDNFGHEIGDKVLFELANISNLMMRRADLVG 538

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R+GGEEF      +S ++A  +AN L + I  + ++  S P++ I++SAG+AE+      
Sbjct: 539 RVGGEEFLIILPDTSLEQAIKIANRLVESIAKTDLSHLS-PTLSISVSAGVAEKEQDASF 597

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
           + ++ RAD ALY AK +GRNR V 
Sbjct: 598 TELLNRADTALYQAKTNGRNRAVF 621


>gi|83645731|ref|YP_434166.1| GGDEF domain-containing protein [Hahella chejuensis KCTC 2396]
 gi|83633774|gb|ABC29741.1| FOG: GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 658

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 12/187 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
            + E   +  ++  L++ D L+ L N + F   L     +        ++++ DID+FK 
Sbjct: 470 DISERKQTEQKLRHLAQYDSLTSLPNRALFYDRLNQALARSHRNQTLFALMYLDIDHFKS 529

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLR 200
           IND  GH VGD++++  S ++ ++      + RLGG+EF   A   S Q +A  +A  + 
Sbjct: 530 INDTHGHGVGDELLSAFSSRIRLIIRESDTLARLGGDEFVIIAENISVQGDAEHIAQKIL 589

Query: 201 KIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++  Q    +  SI +  S G+A    H      ++  AD+ALY AK +GRN    + 
Sbjct: 590 WAMK--QAFQLNELSIQVGTSIGVALPPPHAVNADDLVKMADKALYSAKAAGRNTYRVYK 647

Query: 260 DIENNTC 266
           +  N   
Sbjct: 648 ET-NQAA 653


>gi|330831120|ref|YP_004394072.1| GGDEF domain-containing protein [Aeromonas veronii B565]
 gi|328806256|gb|AEB51455.1| GGDEF domain protein [Aeromonas veronii B565]
          Length = 614

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 59/188 (31%), Positives = 94/188 (50%), Gaps = 11/188 (5%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEK 128
           + + +L G ++   +  L     R+ +L+  D L+G+ N           ++        
Sbjct: 426 LVVMVLCGVLALLTMGWLLDRNRRMRRLAFTDELTGINNRRRVLRQGSDMLALARRQGTP 485

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
             ++ FDID+FK+IND  GH  GD+V+ ++S            +GR GGEEF      +S
Sbjct: 486 FCLLVFDIDHFKRINDTLGHHQGDRVLQWVSRAADRQLRHQDQLGRTGGEEFLILLPDTS 545

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247
            +EA  +A  +R  + N  +    G S  +TIS G A  R   + ++ +I RAD ALY A
Sbjct: 546 LEEACRVAERIRHTVANRALP---GMSYPVTISIGCASLRDDDQDLAALIQRADNALYRA 602

Query: 248 KKSGRNRV 255
           K++GRNRV
Sbjct: 603 KEAGRNRV 610


>gi|206564673|ref|YP_002235436.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
 gi|198040713|emb|CAR56699.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
          Length = 312

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 58/203 (28%), Positives = 98/203 (48%), Gaps = 11/203 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           L     +  + +TIS +       + +E   +  ++ + +  D L+G+ N   F + L  
Sbjct: 113 LTRGRDVEAVCVTISDVTH--VSVMQREREEAVAKLREHANRDGLTGIANRRFFEARLGD 170

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   LS++ FD+D+FK IND FGH  GD V+   + ++  +       GR GG
Sbjct: 171 EFARWQRYGGDLSVLLFDLDHFKTINDRFGHAAGDAVLRETARRVASIVRGQDTFGRFGG 230

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTI 236
           EEFA     ++  EA  +A+ +R  I +  ++ + G S+ +T S G A           +
Sbjct: 231 EEFALLLPCTNLDEAMRVADKVRDAIGSLPVD-AEGVSVPVTASVGGACAKAGALTCDVL 289

Query: 237 IYRADQALYVAKKSGRNRVVCFS 259
           +  AD ALY AK+ GR+R V ++
Sbjct: 290 VNEADAALYRAKRLGRDRSVAYA 312


>gi|241205995|ref|YP_002977091.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240859885|gb|ACS57552.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 286

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 80/232 (34%), Positives = 111/232 (47%), Gaps = 1/232 (0%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           + F +  +    I    +I +    L  +GL P      I    +   +I  T+S +L  
Sbjct: 21  YVFALKMAFLAVILSGVIIALTMPSLDLLGLLPVTLAHAIGFSAIFSWLIGGTVSGMLSL 80

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQIND 144
            +G  +++L +S     +LSR D LSGLLN  AF  +L + +   S+V FD+D FK IND
Sbjct: 81  FAGFAMRDLALSRAEFEKLSRTDTLSGLLNRRAFTEALENTDGDASLVIFDVDRFKTIND 140

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD VI  +S  L   F     V RLGGEEF     G   +        +R  I 
Sbjct: 141 RFGHGCGDAVIIAVSAMLTSAFDEMSVVARLGGEEFGVIVSGEPLEARMERVEGVRARIA 200

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              I  + G  I IT+S G+A+         +   AD+ALY+AK  GRNRVV
Sbjct: 201 GGAIK-AEGHDIRITVSGGVADLVAGRNKQAVYASADRALYLAKALGRNRVV 251


>gi|301382751|ref|ZP_07231169.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato Max13]
 gi|302064026|ref|ZP_07255567.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato K40]
 gi|302130707|ref|ZP_07256697.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato NCPPB 1108]
          Length = 825

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 12/190 (6%)

Query: 80  LLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           LL  +++  + +  L  +  R+   +  D L+GL N + F S L S            ++
Sbjct: 360 LLTHFVAVFADISSLKHAQARLDYQAHHDPLTGLPNRTLFESRLQSALLHSEESGSLGAV 419

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQ 190
           +F D+D FK IND+ GHPVGD ++  ++ +L         V RLGG+EF     G     
Sbjct: 420 LFLDLDRFKHINDSLGHPVGDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQPS 479

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKK 249
           +A  +AN L      S    +    ++I+ S G          ++T++  AD A+Y +K 
Sbjct: 480 DAKAIANKLLACF--STPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKA 537

Query: 250 SGRNRVVCFS 259
            GRNRV  ++
Sbjct: 538 QGRNRVESYT 547


>gi|260462306|ref|ZP_05810514.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Mesorhizobium opportunistum WSM2075]
 gi|259031800|gb|EEW33068.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Mesorhizobium opportunistum WSM2075]
          Length = 713

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 10/183 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQIN 143
            + E   +  R++ L+  D L+GL N S F   L      +    L++   D+D FK IN
Sbjct: 272 DVTERRRTEERMTHLAHHDTLTGLPNRSMFRERLDFALEDAAATPLAVFSLDLDRFKAIN 331

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRK 201
           D +GHP GD ++  ++++L          V R GG+EF            A  +A  + +
Sbjct: 332 DTWGHPAGDWLLKCVAERLQRCLRNETDIVARFGGDEFVVMQSNFKGIANAEKMAKRIVE 391

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            I  S+        +H+ IS GIA           ++  AD ALY AK  GRN    F  
Sbjct: 392 AI--SKPFRDENRDMHVGISLGIAVFPDDGRDADALLKNADTALYRAKSEGRNLYRFFEP 449

Query: 261 IEN 263
             +
Sbjct: 450 EMD 452


>gi|222054925|ref|YP_002537287.1| diguanylate cyclase [Geobacter sp. FRC-32]
 gi|221564214|gb|ACM20186.1| diguanylate cyclase [Geobacter sp. FRC-32]
          Length = 418

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 58/224 (25%), Positives = 105/224 (46%), Gaps = 12/224 (5%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQ 102
           I   F  Y+ +T +      +V   +++++ +  ++ +G   +   +  +L   +  + Q
Sbjct: 193 IIGSFEIYVDVTKYRNEHINVVVTSAIMLLLVISAVHVGALVVVRKLTGQLKKVHAELEQ 252

Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           ++  D L+G+ N    +S             E  + ++  D+DYFK +ND +GH VGD+V
Sbjct: 253 MAIKDELTGIFNRRHILSKANFKAISRQREGELTIGVLNMDVDYFKSVNDTYGHLVGDEV 312

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +S +L          GR+GGEEF      ++  E   +A  + + +     ++    
Sbjct: 313 LKEISRRLTDSCRASDLAGRIGGEEFIVLLPDTAMTEIIAIAERIHRSVGEKPFHVEQ-H 371

Query: 215 SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            + +TIS G+A     E  +S  I RAD ALY AK  GRNR+  
Sbjct: 372 DLAVTISVGVACTLPGEKDLSQAIRRADTALYRAKNMGRNRIEI 415


>gi|295675252|ref|YP_003603776.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
 gi|295435095|gb|ADG14265.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
          Length = 577

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 15/218 (6%)

Query: 63  YILVENLSLVIISITISL-----LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           Y+     + +I ++ ++L      L  +    L+    +   + +L+R D L+GL N   
Sbjct: 343 YVQWRRRAWIIGTLIVALDVTIIALAILFSRQLRLRRAAEEELRELARTDGLTGLNNRRT 402

Query: 118 FIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTP 169
           F                 LS++  D+D FK  ND +GH  GD+ +  ++  +   V    
Sbjct: 403 FEEHVNDEWRRAQRNGRPLSLLLIDVDNFKGFNDLYGHSAGDEALIGVARCIAQNVRRPG 462

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS--AGIAER 227
               R GGEEFA     +    A  +A  +R  ++  Q    +     +T+S  A  A+ 
Sbjct: 463 DTAARFGGEEFAVLLPDTDATGAQRIAEQIRAAVQALQCRHVASTHHVLTVSAGAATAQD 522

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                   ++  ADQALY AK  GRNRV+ F    +N+
Sbjct: 523 AAFATSRALVDAADQALYRAKDGGRNRVMVFDTPTDNS 560


>gi|148658478|ref|YP_001278683.1| diguanylate cyclase [Roseiflexus sp. RS-1]
 gi|148570588|gb|ABQ92733.1| diguanylate cyclase with GAF sensor [Roseiflexus sp. RS-1]
          Length = 681

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 10/170 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151
              + + ID L+G+ N   F  ++    +        L+I+  D+D+FK +ND +GH  G
Sbjct: 504 EARRHATIDELTGVWNRRTFFENVRREFQRSQRTLHPLAILMIDVDHFKSVNDTYGHAAG 563

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++++          +GR GGEEFA A   +    A  +A  LR  +E +     
Sbjct: 564 DQVLRGVAERCRNQLRVIDIIGRYGGEEFAVALPETDIHAAGQIAERLRIAVERAPFVTD 623

Query: 212 SGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFS 259
            G SI +TIS G A     +   +  +I RAD+ALY+AK+SGRN V  +S
Sbjct: 624 YG-SISLTISVGAAVYHPDDHVTLDAVIDRADRALYIAKRSGRNSVRVWS 672


>gi|28872128|ref|NP_794747.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28855382|gb|AAO58442.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 719

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 96/197 (48%), Gaps = 14/197 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++          ++ L +
Sbjct: 261 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 317

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQ 190
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF     G    +
Sbjct: 318 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 377

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           +AA +A  L + +   +    +G  I +  S GIA        +  ++  AD A+Y AK+
Sbjct: 378 QAAKIAEKLIERVSGRRQ--VNGVDITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKR 435

Query: 250 SGRNRVVCFSDIENNTC 266
           +GR +   +    N   
Sbjct: 436 AGRQQYRFYDQNMNGRA 452


>gi|28898257|ref|NP_797862.1| hypothetical protein VP1483 [Vibrio parahaemolyticus RIMD 2210633]
 gi|153837780|ref|ZP_01990447.1| ggdef domain containing protein [Vibrio parahaemolyticus AQ3810]
 gi|260878597|ref|ZP_05890952.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|260898777|ref|ZP_05907218.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           Peru-466]
 gi|28806474|dbj|BAC59746.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|149748885|gb|EDM59720.1| ggdef domain containing protein [Vibrio parahaemolyticus AQ3810]
 gi|308087876|gb|EFO37571.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           Peru-466]
 gi|308091353|gb|EFO41048.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|328473732|gb|EGF44567.1| hypothetical protein VP10329_13755 [Vibrio parahaemolyticus 10329]
          Length = 320

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 91/175 (52%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L  +   +S++SR D L+GL N + +  SL          +   S+V FDID+FK++ND 
Sbjct: 145 LRETNQHLSEISRKDGLTGLFNRAFWEQSLKDEFAHLKVIDGPCSLVIFDIDHFKKVNDT 204

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GHP GD+VI   S  L     +    GR GGEEF      +++++A   A  LRK IE 
Sbjct: 205 YGHPTGDEVIRRTSALLRKTARSSDICGRFGGEEFTVLLPHTNQEQACYFAERLRKRIEQ 264

Query: 206 SQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             + +     I+ TIS G+ E   + E  +  +  AD ALY AK++GRN+     
Sbjct: 265 EIVKVED-FLINYTISIGVCEYKPYFESHTQWLKSADAALYRAKENGRNQTCLHE 318


>gi|156974523|ref|YP_001445430.1| hypothetical protein VIBHAR_02241 [Vibrio harveyi ATCC BAA-1116]
 gi|156526117|gb|ABU71203.1| hypothetical protein VIBHAR_02241 [Vibrio harveyi ATCC BAA-1116]
          Length = 320

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 63/177 (35%), Positives = 91/177 (51%), Gaps = 9/177 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDN 145
           L  +   +S++SR D L+GL N + +  SL     +L       S+V FDID+FK++ND 
Sbjct: 145 LRETNQHLSEISRKDGLTGLFNRAYWEQSLKEEFAQLKVIEGASSLVIFDIDHFKKVNDT 204

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD+VI   S  L     +    GR GGEEF      +++++A   A  LRK IE 
Sbjct: 205 YGHHTGDEVIRRTSSLLRKTARSSDICGRFGGEEFTVLLPHTNQEQANYFAERLRKRIEQ 264

Query: 206 SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             + +     I+ TIS G+ E     E  +  +  AD ALY AK+SGRN+     D 
Sbjct: 265 EIVKVEE-FLINYTISIGVCEYKSNFESHTQWLKSADAALYRAKESGRNQTCNHEDA 320


>gi|117918886|ref|YP_868078.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. ANA-3]
 gi|117611218|gb|ABK46672.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. ANA-3]
          Length = 1487

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 13/205 (6%)

Query: 72   VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GS 124
            V+ S + S +   I  S + E   +   + +L+  D L+GL N S F S L         
Sbjct: 1024 VMQSASDSSVHYVIVFSDITERKRTEADLRRLANYDVLTGLPNRSLFSSRLLQSIQTAQQ 1083

Query: 125  YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
              EKL+++F D+D FK +ND++GH +GD ++   S++L    G+   + R GG+EF    
Sbjct: 1084 TGEKLALLFLDLDRFKHVNDSYGHSMGDALLVEASNRLQSCIGSEHLLCRFGGDEFVILL 1143

Query: 185  LGS-SEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRAD 241
              + +  E   +A  L  +I+   ++    G   +I+ S GI+            I  AD
Sbjct: 1144 RNANNLNEINHIAERLLAQIVAPFKLF---GREFYISTSIGISIWPDDAVQPEAFIKNAD 1200

Query: 242  QALYVAKKSGRNRVVCFSDIENNTC 266
             A+Y AK+ GR     +S   N   
Sbjct: 1201 LAMYHAKEEGRGNFKYYSSERNAQA 1225


>gi|118581762|ref|YP_903012.1| diguanylate cyclase [Pelobacter propionicus DSM 2379]
 gi|118504472|gb|ABL00955.1| diguanylate cyclase [Pelobacter propionicus DSM 2379]
          Length = 380

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 110/239 (46%), Gaps = 14/239 (5%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS 88
           + F++  ++     I +    L  +GL P   LE  L    +LV  +  I++        
Sbjct: 139 LSFNLAPTLLTVVAIAVLPNILVRLGLAP--QLELPLYN--ALVWPTCLIAMFGNLALDR 194

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           + + LF     I   +RID L+G+ N   F       +     +   +S    DID+FKQ
Sbjct: 195 LYRRLFRYRRSIEHTARIDTLTGIANRFHFSEAAPVLLELCRRHEHPISAFMVDIDHFKQ 254

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GHP GD+VI  ++D +         + R GGEEF      +    A  +A  +R+
Sbjct: 255 INDRYGHPEGDEVIRLVADSMRTKLRNTDLLARYGGEEFVVILPETPPHAAVGVAESVRR 314

Query: 202 IIENSQINISSGPSIHITISAGIAER---CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I    + + +G SI ITIS G+A          +  ++ +AD  LY AK+ GRNRVV 
Sbjct: 315 TIAEKALALGAGRSIRITISIGVAGYDLLPDDIGLEELLKQADTRLYEAKEGGRNRVVA 373


>gi|46578832|ref|YP_009640.1| GGDEF domain-containing protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603561|ref|YP_967961.1| diguanylate cyclase [Desulfovibrio vulgaris DP4]
 gi|46448244|gb|AAS94899.1| GGDEF domain protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|120563790|gb|ABM29534.1| diguanylate cyclase [Desulfovibrio vulgaris DP4]
 gi|311232695|gb|ADP85549.1| diguanylate cyclase [Desulfovibrio vulgaris RCH1]
          Length = 372

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 104/229 (45%), Gaps = 9/229 (3%)

Query: 36  SIFIATVIF-IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
            + +A ++F I  I      L+PF   +      L  +  SI++  +         + L 
Sbjct: 127 GMLVALLVFGIICILYGPEELSPFEYGDSFAPRYLLALTASISLVSVAEAARRHSERRLL 186

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFG 147
              ++++  +R D L+GL N  +         +        LS++  DID+FK IND  G
Sbjct: 187 ALTHQLAFCARSDPLTGLANRRSLCERFEQERQRSLRNNTPLSLILCDIDHFKTINDTHG 246

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  L+D L         V R GGEEF      + E+ A  LA  LR + E+  
Sbjct: 247 HECGDYVLRKLADMLRTNMRAQDTVCRWGGEEFLLLLPDTDEKGATRLAEKLRTLTESYP 306

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +   G  I +T+  G+ +   +      I +AD+ LY+AK+ GRNRVV
Sbjct: 307 FSYH-GIPIRVTLCFGVHQCSREGHTDYHIRKADRKLYMAKEQGRNRVV 354


>gi|303246773|ref|ZP_07333050.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
 gi|302491790|gb|EFL51670.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
          Length = 531

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 13/182 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           S+  E+        +LS  D L+GL N           +++        S +  D+D+FK
Sbjct: 348 SMAGEVRGRIEEAERLSVQDALTGLYNRRFLFSGGMKLLAASQRSGRPCSCLMLDVDHFK 407

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND  GH  GD+V+  L   L         V R GGEEFA    G+   +AA+LA   R
Sbjct: 408 TVNDTHGHTAGDQVLVHLGRVLSGCVRKSDLVARYGGEEFAVLLTGADVAQAAMLAERFR 467

Query: 201 KIIENSQINISSGPSIHITISAGIAERCH-----KEPISTIIYRADQALYVAKKSGRNRV 255
             +  +   + +  ++ +T+S G+A         + P+  ++ RAD+ALYVAK +GRN V
Sbjct: 468 HALSGAPCMVEN-RALVVTVSIGVAALRDQVEYGETPLDDLLARADKALYVAKAAGRNCV 526

Query: 256 VC 257
             
Sbjct: 527 KV 528


>gi|298293748|ref|YP_003695687.1| diguanylate cyclase [Starkeya novella DSM 506]
 gi|296930259|gb|ADH91068.1| diguanylate cyclase [Starkeya novella DSM 506]
          Length = 590

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 5/170 (2%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHP 149
           L  + +R++ L+ +D L+G+ N  +F ++L        +L+++  DID FK  ND +GH 
Sbjct: 405 LRNANHRLNSLASLDPLTGIANRRSFDAALALQWNTVSQLAVLMIDIDKFKAFNDLYGHK 464

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  I  ++  +         V RLGGEEFA     +S + A   A  LR+ +E   + 
Sbjct: 465 EGDSCIRLVAQTMASTLRGTDLVARLGGEEFAVLMPSASLRAATEAAQRLRRAVETVAVP 524

Query: 210 ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              GP+  +T+S G A  E       S ++  AD+ALY AK +GRN V  
Sbjct: 525 HRGGPAGVVTVSIGCAACEPEPGLTSSDLMVAADRALYEAKAAGRNEVRV 574


>gi|86741218|ref|YP_481618.1| diguanylate cyclase [Frankia sp. CcI3]
 gi|86568080|gb|ABD11889.1| diguanylate cyclase (GGDEF domain) [Frankia sp. CcI3]
          Length = 587

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 89/168 (52%), Gaps = 10/168 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           +    +L+  D L+GL N   F     +           L+    DID+FKQ+ND  GH 
Sbjct: 418 FEETQRLADSDPLTGLANRRHFFEQADALVRGHLHAARSLAAFMIDIDHFKQVNDGHGHA 477

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD V+A ++ ++    G    VGR+GGEEFAA   G     A +LA  LR+ I  S + 
Sbjct: 478 VGDAVLAEVARRVQGTLGPQDIVGRIGGEEFAAVL-GCPAATAGVLAERLRQAIGASPVA 536

Query: 210 ISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
            + GP + +T+S G+A     +  +  ++ RAD ALY AK+SGR+RV 
Sbjct: 537 TADGP-LPVTVSVGVAMLNPDDSGLGDLLIRADVALYQAKRSGRDRVA 583


>gi|28867764|ref|NP_790383.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28850999|gb|AAO54078.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 829

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 12/190 (6%)

Query: 80  LLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           LL  +++  + +  L  +  R+   +  D L+GL N + F S L S            ++
Sbjct: 364 LLTHFVAVFADISSLKHAQARLDYQAHHDPLTGLPNRTLFESRLQSALLHSEESGSLGAV 423

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQ 190
           +F D+D FK IND+ GHPVGD ++  ++ +L         V RLGG+EF     G     
Sbjct: 424 LFLDLDRFKHINDSLGHPVGDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQPS 483

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKK 249
           +A  +AN L      S    +    ++I+ S G          ++T++  AD A+Y +K 
Sbjct: 484 DAKAIANKLLACF--STPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKA 541

Query: 250 SGRNRVVCFS 259
            GRNRV  ++
Sbjct: 542 QGRNRVESYT 551


>gi|260462172|ref|ZP_05810416.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075]
 gi|259032032|gb|EEW33299.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075]
          Length = 263

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/256 (25%), Positives = 107/256 (41%), Gaps = 25/256 (9%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY- 84
            F ++  +  +  + T+     +  F   L    GL+ ++  N  L    + ++  L + 
Sbjct: 9   AFFVFIFVILAAGLVTLHAYGQLQSFATELHTASGLDKVIYLNKLLFATGVLLATALFFG 68

Query: 85  -------ISGSILKE---------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE- 127
                  I     +E         L      +   +  D L+G+ N   F  +L  Y E 
Sbjct: 69  IFFIYPLIRKQATEEGKLRAMTVSLSARSETLEHAALTDSLTGMQNRRYFDDALKEYLEE 128

Query: 128 ------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                  + ++  D+D+FKQ+ND  GH VGD+V+  ++  L  +      V RLGGEEFA
Sbjct: 129 FRRIEKPVGLMILDLDHFKQVNDTHGHDVGDEVLRAVASCLKDMTRYHDVVARLGGEEFA 188

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                   +     A  +RK I N  + ++    + IT S G+A    +E       RAD
Sbjct: 189 VVTPNMDAELLGKFAERIRKAIANMSV-LTGNVRLKITTSVGLAVWDRQETAEDFYRRAD 247

Query: 242 QALYVAKKSGRNRVVC 257
           + LY AK+ GRNRV  
Sbjct: 248 RQLYEAKRQGRNRVCA 263


>gi|253996206|ref|YP_003048270.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera mobilis JLW8]
 gi|253982885|gb|ACT47743.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera mobilis JLW8]
          Length = 834

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 11/184 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            + + E+     +I  ++  D L+GL N + F       I    + N + +++  D+D F
Sbjct: 390 ATDITEVAEYRRKIESMAFHDQLTGLPNRTLFSQQLSVAIDQAKTNNSQFALIILDLDQF 449

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND  GH +GDK++  ++ ++           RLGG+EF        S +    ++N 
Sbjct: 450 KSINDTMGHAIGDKLLIEVARRITNSLDQHCTCARLGGDEFIILVESVPSREHVEYVSNV 509

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           L   I   Q+ +  G    I+ S GIA      E +  ++  AD A+Y AKK GRNR   
Sbjct: 510 LLNQI--MQVYVIDGSEYFISASIGIAYFPDDSEDMDDLLKYADSAMYHAKKGGRNRYHT 567

Query: 258 FSDI 261
           +S  
Sbjct: 568 YSPA 571


>gi|257059586|ref|YP_003137474.1| diguanylate cyclase [Cyanothece sp. PCC 8802]
 gi|256589752|gb|ACV00639.1| diguanylate cyclase [Cyanothece sp. PCC 8802]
          Length = 462

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 11/180 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           +EL  + +++  L+ ID L+ + N   F          L    + LS++  D+DYFK  N
Sbjct: 277 QELQKANDKLEYLAIIDGLTQVHNRRYFNQYLVQEWRRLMRERQSLSLILCDVDYFKLFN 336

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D++ H  GD  +  ++  +   V      V R GGEEFA     ++E  AA +A  +R  
Sbjct: 337 DHYLHQAGDDCLQKIAQVMQDVVKRPADLVARFGGEEFAIILSNTNELGAARVAQKIRLG 396

Query: 203 IENSQINIS-SGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +E  +I  + S  S ++T+S GIA            +I  AD+ALY AK  GRNR   ++
Sbjct: 397 VEQLKIPHALSQCSEYVTLSLGIATTIPTPDISSERLILAADKALYQAKNMGRNRYCLYA 456


>gi|330900807|gb|EGH32226.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 664

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 96/197 (48%), Gaps = 14/197 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++          ++ L +
Sbjct: 206 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 262

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQ 190
           +F D+D FKQIND+ GH  GD+V+ ++++Q          + R+GG+EF     G    +
Sbjct: 263 LFMDLDGFKQINDSLGHEAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 322

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           +AA +A  L + +   +     G  I +  S GIA        +  ++  AD A+Y AK+
Sbjct: 323 QAAKIAEKLIERVSGRRQ--VDGVEITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKR 380

Query: 250 SGRNRVVCFSDIENNTC 266
           +GR +   +    N   
Sbjct: 381 AGRQQYRFYDQNMNGRA 397


>gi|299132243|ref|ZP_07025438.1| diguanylate cyclase [Afipia sp. 1NLS2]
 gi|298592380|gb|EFI52580.1| diguanylate cyclase [Afipia sp. 1NLS2]
          Length = 344

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 13/188 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
           +I   L  +  R    ++ D L+ L N  A                + LS++  DID+FK
Sbjct: 159 TIRTSLRDAEER----AKTDTLTALPNRRALEEFFRVAQMRAMEVEDPLSLLMLDIDHFK 214

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           + ND +GH VGD+VI  ++  L           R GGEE  A   G+       +A  +R
Sbjct: 215 KFNDTYGHSVGDQVIRLIASVLRERVRENDLPARYGGEELIAVLPGADLATCHEVAERIR 274

Query: 201 KIIENSQI-NISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +    +   S+G S+  I++S G+A+    E ++T+I R D+ALY AK  GRN VV  
Sbjct: 275 TTVAGCHLTRRSTGESLPDISVSIGVAQFRPGESMATLIERCDRALYKAKAQGRNCVVSE 334

Query: 259 SDIENNTC 266
            D+ +  C
Sbjct: 335 DDLTDADC 342


>gi|307726295|ref|YP_003909508.1| diguanylate cyclase [Burkholderia sp. CCGE1003]
 gi|307586820|gb|ADN60217.1| diguanylate cyclase [Burkholderia sp. CCGE1003]
          Length = 368

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 84/173 (48%), Gaps = 15/173 (8%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
             R+ QL   D L+GL N   F   L         Y   L+ +F D+D FK+IND +GH 
Sbjct: 187 RERLKQLGMTDPLTGLSNRRYFDERLREELVRAARYGVPLACLFIDVDSFKRINDTYGHQ 246

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+ +A ++  +         V R GGEEFAA   G    +A  +A  +R  +E  Q+ 
Sbjct: 247 TGDRALAAVAACVRQQVRLGDTVARYGGEEFAALVQG-DRADAQTVAERVRVAVEKLQLL 305

Query: 210 ISSGPSIHITISAGIAERCHKEPIST-------IIYRADQALYVAKKSGRNRV 255
              G  I +T+S G+A R      +        ++  AD+A+Y AK +GRNRV
Sbjct: 306 DDDGERIALTVSIGVAARTVSGSPAEAVALGRAMMDEADRAMYQAKHNGRNRV 358


>gi|323529489|ref|YP_004231641.1| diguanylate cyclase [Burkholderia sp. CCGE1001]
 gi|323386491|gb|ADX58581.1| diguanylate cyclase [Burkholderia sp. CCGE1001]
          Length = 371

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 15/175 (8%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
               R+ QL   D L+GL N   F   L         Y+  L+ +F D+D FK+IND +G
Sbjct: 185 AHRERLKQLGMTDPLTGLSNRRYFDERLREELMRAARYSVPLACLFIDVDSFKRINDTYG 244

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+ +A ++  +         V R GGEEFAA   G    +A  +A  +R  +E   
Sbjct: 245 HQTGDRALAAVAACVRQQVRLGDTVARYGGEEFAALLQG-DRADAQTVAERVRAAVEKLA 303

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTI------IYRADQALYVAKKSGRNRV 255
           +    G  I +T+S G+A R     P   +      +  AD+A+Y AK +GRNRV
Sbjct: 304 LLDDDGERIALTVSIGVAARTVSGSPADALALGRAMMDEADRAMYQAKHNGRNRV 358


>gi|260902608|ref|ZP_05911003.1| PAS domain protein [Vibrio parahaemolyticus AQ4037]
 gi|308109632|gb|EFO47172.1| PAS domain protein [Vibrio parahaemolyticus AQ4037]
          Length = 811

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 9/186 (4%)

Query: 81  LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDI 136
           L+ YI     +        ++ +++  D L+ L N +  IS L  +    +  + +F DI
Sbjct: 370 LINYICVFEDISVRKAHEEKLQRMAFYDPLTNLPNRTHLISLLEQHIEMEQPFATLFLDI 429

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK IND+ GH  GD++++ L+ +L  +      V R+GG+EF            + L 
Sbjct: 430 DHFKHINDSMGHFCGDQLLSKLAVRLQDILHLNAHVARIGGDEFVIVLPDIDGD--SPLL 487

Query: 197 NDLRKI--IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
             L  I  +     ++++  S+ I+ S GIA      +   T++  AD A+Y+AKK+GRN
Sbjct: 488 ETLSSILGVFRRPFDLANHDSLRISTSIGIALYPNDGQDSETLLKNADTAMYLAKKNGRN 547

Query: 254 RVVCFS 259
               +S
Sbjct: 548 GYAFYS 553


>gi|241767604|ref|ZP_04765259.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
 gi|241361502|gb|EER57938.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
          Length = 389

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 67/265 (25%), Positives = 128/265 (48%), Gaps = 25/265 (9%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIY--FSIFFSIFIATVIFIANIFLFYIGLTPFYGL 61
            L+   ++W   E+   +     +++    ++   + +      A++ +  +GL     L
Sbjct: 128 GLQALWALWAVVERRRATVGRGAWLLMAGLALEAGVLLVRASLAASLPVPQVGLLQGGTL 187

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           + +      +    + +   LG+++  + ++     NR+  ++ +D L+G  N  A IS+
Sbjct: 188 QTLTF----MATFGVVLLSSLGFVT--MARDRADEANRV--MAAVDALTGAANRRALISA 239

Query: 122 LGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L           E +S++  DID+FK++ND +GH  GD+V+  +   L     +   VGR
Sbjct: 240 LDRDVARAVRTREPISVLMVDIDHFKRVNDQYGHQAGDQVLCRVVQVLQERVRSQDLVGR 299

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEP 232
            GGEEF     G+    A +LA+DLRK +E+         +I +T+S G+   +    + 
Sbjct: 300 YGGEEFLVVLPGTDVAGALLLASDLRKAVESPA------GAIGVTVSIGVFGGQLEPGDS 353

Query: 233 ISTIIYRADQALYVAKKSGRNRVVC 257
              ++  AD+ALY+AK++GRNRV  
Sbjct: 354 WDVLVAAADRALYLAKENGRNRVEV 378


>gi|327537828|gb|EGF24532.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Rhodopirellula baltica WH47]
          Length = 875

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 81/176 (46%), Gaps = 10/176 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           E+      +  L+  D L+G LN  AF   +             LS    DID+FK +ND
Sbjct: 376 EIQKKNQELEILATRDALTGCLNRRAFFERMEEMLTDYRNAGRPLSCFMVDIDHFKSVND 435

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+  +S  L  +      V R GGEEF     G    EA   +   R  + 
Sbjct: 436 TYGHHAGDEVLRKVSKVLRDLHEENQVVCRYGGEEFCVMLPGHDLDEAMEQSERTRLAVM 495

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           N  I +    S+ +T S G++E       + ++I +AD  LYVAK+ GRN+ V F 
Sbjct: 496 N--IRLEDPESLRLTASLGVSELKFGATDVQSLINQADSCLYVAKRGGRNQSVAFD 549


>gi|330810256|ref|YP_004354718.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378364|gb|AEA69714.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 692

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 100/214 (46%), Gaps = 13/214 (6%)

Query: 64  ILVENLSLVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +L+  L+++ I++  S+L   L   +  + + L ++   ++QL+  D L+GL N      
Sbjct: 219 VLITTLAVLAIALLTSILDARLEARTAELAQSLTLANRELTQLALHDPLTGLPNRVLLAD 278

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            +     +        +++F D+D FK +ND FGH +GD ++  ++ +L     +   + 
Sbjct: 279 RIDQAMHRVQEQGGCFALMFIDLDGFKPVNDAFGHHMGDLLLRDVALRLREDLRSQDTLA 338

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           R+GG+EF      +   +A  LA     +I  +     +   + I+ S GIA    + + 
Sbjct: 339 RIGGDEFVLLVQLAEPDDALRLAARQVGLIART--FRVADHDLQISASVGIALYPGNGQS 396

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              ++  AD A+Y AK +G+N    F    N+  
Sbjct: 397 AEELLMNADAAMYHAKGAGKNGYSFFDASMNSNA 430


>gi|291613512|ref|YP_003523669.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans
           lithotrophicus ES-1]
 gi|291583624|gb|ADE11282.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans
           lithotrophicus ES-1]
          Length = 564

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 12/203 (5%)

Query: 67  ENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--- 122
           E LS+  +       + YI+  S + +   +  RI  L+  D L+ L N + F   L   
Sbjct: 364 EWLSIGTVKNAQGETINYIALFSDITKRKEAEARIEHLAHYDSLTQLPNRALFAERLKHA 423

Query: 123 ----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                      +++F D+D FK +ND  GH  GD ++  ++ +L         + R GG+
Sbjct: 424 LLVAQRNRTMTALLFLDLDKFKFVNDTMGHLAGDLLLQSVALRLKACVRESDTICRQGGD 483

Query: 179 EFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTI 236
           EF          ++A  +A  +   +  ++ +   G  + IT S GI+           +
Sbjct: 484 EFMILLPEIGGAEDAEKVARKIVDAM--TEPHRIEGRELTITFSIGISISPGDAADDEAM 541

Query: 237 IYRADQALYVAKKSGRNRVVCFS 259
           +  AD A+Y AK+ GRN    F+
Sbjct: 542 VRHADDAMYAAKEGGRNNYRFFA 564


>gi|146282936|ref|YP_001173089.1| sensory box protein [Pseudomonas stutzeri A1501]
 gi|145571141|gb|ABP80247.1| sensory box protein [Pseudomonas stutzeri A1501]
          Length = 855

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/193 (28%), Positives = 83/193 (43%), Gaps = 11/193 (5%)

Query: 81  LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVF 133
           LLGY  + S + E   +  R+  LS+ D L+GL N S     L            L++++
Sbjct: 407 LLGYRGTASDVTEETRAQARVQYLSQHDALTGLPNRSRLRDYLEQNLASLRSGSTLTLLY 466

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EA 192
            D+D FK +ND  GH  GD+V+  ++ +L         V RLGG+EF        E  + 
Sbjct: 467 IDLDRFKPVNDTLGHAAGDEVLIGVASRLRERTRDGDLVARLGGDEFVVVLHRMGEDNDI 526

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSG 251
             L N +   +  S   I     I I  S G+A         + ++  AD ALY AK +G
Sbjct: 527 DRLCNRIIDAL--SAPFIYEDQQISIGASIGVALAPTDANQANELLRCADIALYQAKDAG 584

Query: 252 RNRVVCFSDIENN 264
           R     +    + 
Sbjct: 585 RGTWRAYGREMDQ 597


>gi|320108512|ref|YP_004184102.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Terriglobus saanensis SP1PR4]
 gi|319927033|gb|ADV84108.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Terriglobus saanensis SP1PR4]
          Length = 865

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 20/215 (9%)

Query: 70  SLVIISITISLLLGYIS--------GSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           S VI+ I+++ L   +            + E   +   IS L+  D L+GL + +     
Sbjct: 390 SHVIVEISVTALTDELQKVNGWLCVAYDITERKHTEEYISHLAHHDSLTGLPSRALLNDR 449

Query: 122 LG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           +          + K++++  DID FK++ND+ GH VGD ++  ++ +L         V R
Sbjct: 450 MELALKRAHRNSSKVALMMVDIDNFKRVNDSLGHSVGDNLLISVAQRLQHTIRETDTVAR 509

Query: 175 LGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEP 232
           +GG+EF        S++EA  +A  L  ++        +G    I+ S G+         
Sbjct: 510 MGGDEFIVLIDDVRSDEEAEKIAEKLVAVMAA--PVTINGEQHPISASIGLCLYPEGGGD 567

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFS-DIENNTC 266
           +  ++  AD+A+Y AK  GRN    FS D+ + T 
Sbjct: 568 LDALLKNADEAMYFAKAEGRNMYQIFSKDMASATA 602


>gi|119776759|ref|YP_929499.1| signal transduction protein [Shewanella amazonensis SB2B]
 gi|119769259|gb|ABM01830.1| signal transduction protein containing a membrane domain, an EAL
           and a GGDEF domain protein [Shewanella amazonensis SB2B]
          Length = 709

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 12/190 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           +   L E   S  RI QL+  D L+GL N +  +  L           +  +++  D+D 
Sbjct: 250 TNMDLTERKESEARIYQLAYYDVLTGLANRTLLMERLKAAIALCERSKQIGALLIIDLDN 309

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILA 196
           FK +ND  GH VGD ++  ++D+L+        V RLGG+EF      LG  E+ AA+ A
Sbjct: 310 FKILNDTMGHDVGDALLKMVADRLLQAVRRCELVARLGGDEFVIVMENLGIDERGAALKA 369

Query: 197 NDLRKIIENS--QINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253
             + + +        + +G  +  + S GIA      P +  ++ +AD A+Y AK++G+N
Sbjct: 370 KSVGQKVRGLLNDPFMLAGKQLRTSPSIGIALFAEGRPGLEELLKQADVAMYQAKEAGKN 429

Query: 254 RVVCFSDIEN 263
            +  F     
Sbjct: 430 ALRFFDPAMQ 439


>gi|329902598|ref|ZP_08273159.1| signal transduction protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327548706|gb|EGF33349.1| signal transduction protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 496

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 11/195 (5%)

Query: 80  LLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSI 131
           ++  +I+ S+ + E   S  RI  L+  D L+GL N  +    L          N+++++
Sbjct: 40  VITHFIAMSLDISERKASEQRIHYLAHHDALTGLPNRFSCDERLTLSIQQARRQNDRVAV 99

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-Q 190
           +F D+D FK IND+ GH VGD+++  ++ +L         V RLGG+EF        + +
Sbjct: 100 LFVDLDRFKNINDSLGHHVGDQLLCSVAARLGAAVRDGDTVSRLGGDEFIVILNNIDQVE 159

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKK 249
           E   L    R +    + +      ++++ S G+A      + I  +   AD A+Y AKK
Sbjct: 160 EIGKLIER-RLMPAVCEPHCIESAELYVSCSIGVAVYPDDSDTIGGLKRHADSAMYQAKK 218

Query: 250 SGRNRVVCFSDIENN 264
            GRN    F+   N 
Sbjct: 219 LGRNNAQFFTPALNE 233


>gi|302344595|ref|YP_003809124.1| diguanylate cyclase with PAS/PAC sensor [Desulfarculus baarsii DSM
           2075]
 gi|301641208|gb|ADK86530.1| diguanylate cyclase with PAS/PAC sensor [Desulfarculus baarsii DSM
           2075]
          Length = 831

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 82/179 (45%), Gaps = 11/179 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            + +       +  LS  D L+GL N   F       +     + + L+++  D+D FKQ
Sbjct: 642 DITDQKNLEQELRLLSVTDELTGLYNKRFFHATVDREMEIARRFGQPLALLMLDLDRFKQ 701

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            ND FGH  GDK +A  +  +  V        R GGEEFA     +   EA ++A  +R 
Sbjct: 702 YNDTFGHLEGDKALAQFAGVVRGVVRAADLPCRYGGEEFAVLLPRTERAEAMVVAERIRA 761

Query: 202 IIENSQINISSG----PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +E   +   +         +T+S G+A          +I  ADQALY AK++GRNRV+
Sbjct: 762 AVEAMDLWPVAADGQRQKRRVTVSIGVACLKGDLNQDRLINLADQALYAAKQAGRNRVI 820


>gi|124266212|ref|YP_001020216.1| diguanylate cyclase [Methylibium petroleiphilum PM1]
 gi|124258987|gb|ABM93981.1| diguanylate cyclase [Methylibium petroleiphilum PM1]
          Length = 351

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 6/179 (3%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFK 140
           ++   + +L          ++ D L+GL N  +F       L      +S+V  DID+FK
Sbjct: 157 VNQREIAQLRAEVAAARSEAQTDSLTGLHNRRSFEQHIAKFLADREAAMSLVLVDIDHFK 216

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND  GH  GD+V+  ++  L           R+GGEEFA     +  + A  LA  +R
Sbjct: 217 LVNDTHGHLFGDQVLMAVARVLKESVRNDDLAARIGGEEFALLLPSTPLKGAVELAERIR 276

Query: 201 KIIENSQINISSGPS--IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             I NS+I   +       IT+S G+A+    +   +   RAD+ALY +K+ GRNRV  
Sbjct: 277 TSIANSRIRRRNSEQQVGQITVSLGVADLWPSDNGESWFSRADEALYASKREGRNRVTA 335


>gi|327394760|dbj|BAK12182.1| diguanylate cyclase YdaM [Pantoea ananatis AJ13355]
          Length = 526

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 115/249 (46%), Gaps = 16/249 (6%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL----EYILVENLSLVIISI 76
           +  P + ++   +  S+  A +  +  + L  +   P + L      I   + +  I  I
Sbjct: 275 TLQPLSGLLLKVLKHSVPFALLTLLVAVILARMIAMPLWQLARKASKIDASSATYEIGGI 334

Query: 77  TISLL-LGYISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSL---GSYNEKL 129
                    +  ++L  + +  ++I +L   ++ D L+ LLN     + L    +  +  
Sbjct: 335 RAWYFEAAQVKRALLTGIGLVQDKIGRLSSEAQTDSLTLLLNRRGLNAVLDYYQTMRQPF 394

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID+FK +NDN+GH VGD+VI  ++  L         V R GGEEF      +  
Sbjct: 395 AVLALDIDHFKSVNDNWGHDVGDRVIRQVAQTLRQSARQSDVVCRNGGEEFLMLLPNTPL 454

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAK 248
           +EA   A  +R  I ++ I        HITIS G+AE   +  P+ + + RAD ALY AK
Sbjct: 455 KEAEATAERIRISIADNAIEAVG----HITISIGVAEWDARRPPLESSLKRADDALYQAK 510

Query: 249 KSGRNRVVC 257
            SGRN  V 
Sbjct: 511 NSGRNCTVV 519


>gi|257485998|ref|ZP_05640039.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330986057|gb|EGH84160.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331010362|gb|EGH90418.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 527

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 92/205 (44%), Gaps = 20/205 (9%)

Query: 81  LLGYISGSILKE---------LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124
           L+G+I   I  E         L      +  ++  D L+GL N   F             
Sbjct: 301 LIGHIHSRIRAEDQLLDSQAALIQLNQHLEFIASEDKLTGLANRRRFDQFLEVEFKRARR 360

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAA 183
               LS++  D D+FK+ ND++GH  GD+ +  L+  +      P     R GGEE A  
Sbjct: 361 ERSLLSLILIDADHFKRYNDHYGHLAGDECLVALARVVEQCIRRPGDVAARYGGEEIAVV 420

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRA 240
             G+ E  A  +A ++ + I + QI   + P   +T+S G+A     +      ++I  A
Sbjct: 421 LPGTDESSARQVAENILQAIRDEQIEHPASPFGIVTVSLGVATFVGTDRQLDQRSLIELA 480

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D+ALY AK  GRNRV   S+I  +T
Sbjct: 481 DRALYAAKSQGRNRVNVASEIATST 505


>gi|319645363|ref|ZP_07999596.1| YhcK protein [Bacillus sp. BT1B_CT2]
 gi|317393172|gb|EFV73966.1| YhcK protein [Bacillus sp. BT1B_CT2]
          Length = 362

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 81/257 (31%), Positives = 116/257 (45%), Gaps = 24/257 (9%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE 67
           +L + +  +           +I+ ++  SI I  ++ + + FL  + LT F+ L      
Sbjct: 119 YLILRIMDKDAGTYRKTFALVIFANVAISIVI--LMILHDFFLMKMLLTWFWILS----- 171

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------IS 120
                    TI         S L++      +  + S ID L+GL N   F       IS
Sbjct: 172 ---------TIGGFTSVYIVSYLRKSHFLLKKYEEESSIDYLTGLNNVRQFDAIWNAHIS 222

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           +    NEKLS++  DIDYFK IND +GH  GD ++  L   L     +   V R GGEEF
Sbjct: 223 NAKEKNEKLSLLLIDIDYFKTINDTYGHSNGDAILKELGTILKKSARSEDIVSRNGGEEF 282

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYR 239
           +      S  +AA +A  +RK +E     IS    IHIT+S G+A           +I +
Sbjct: 283 SVILPNCSHSQAAEIAERVRKEVETHTFFISHSKKIHITVSIGVAAFPEVIHSTEELIEK 342

Query: 240 ADQALYVAKKSGRNRVV 256
           ADQ LY AK  GRNRV 
Sbjct: 343 ADQCLYRAKHLGRNRVC 359


>gi|307592283|ref|YP_003899874.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Cyanothece sp. PCC 7822]
 gi|306985928|gb|ADN17808.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Cyanothece sp. PCC 7822]
          Length = 1152

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 16/191 (8%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           + + +     S  +I  L+  D L+ L N   F+  L S         E  +I+F D+D 
Sbjct: 711 THTDITGHKQSEAKIKHLAYYDPLTSLANRRLFLEHLESALSVARSKGEYGAILFIDLDQ 770

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG------SSEQEA 192
           FK +ND  GH  GD ++  ++ +L         V RLGG+EF            ++   +
Sbjct: 771 FKTLNDARGHDAGDHLLIEVAKRLKQSVRKSDTVARLGGDEFVVLLPQLHHEPTTAAHLS 830

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
             +A  +R+ +  S   +       I+ S GI       E +S ++  AD A+Y  K+ G
Sbjct: 831 REVAEKVRQKL--STPFVFQHEEFIISASIGITIFPKANETVSDLLKEADTAMYQVKEKG 888

Query: 252 RNRVVCFSDIE 262
           RN V  F    
Sbjct: 889 RNGVCFFDTTM 899


>gi|229192257|ref|ZP_04319222.1| Sensory box/GGDEF family protein [Bacillus cereus ATCC 10876]
 gi|228591207|gb|EEK49061.1| Sensory box/GGDEF family protein [Bacillus cereus ATCC 10876]
          Length = 431

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 85/176 (48%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL  +Y    +L+ ID L+ + N   F   L          +EK++I+ FDID FK +
Sbjct: 255 ITELDETYQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTV 314

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 315 NDTYGHDFGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 374

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q    S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 375 IETKQFTGIS----KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 426


>gi|254372423|ref|ZP_04987913.1| hypothetical protein FTCG_01647 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570151|gb|EDN35805.1| hypothetical protein FTCG_01647 [Francisella novicida GA99-3549]
          Length = 772

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 54/198 (27%), Positives = 94/198 (47%), Gaps = 12/198 (6%)

Query: 79  SLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLS 130
           S ++ Y+S  + + +  I  + I + +  D L+GL N   F S +           +  +
Sbjct: 319 SQVIYYVSVETDISKRRIRLDEIEKYAYQDMLTGLFNRYYFESHISDHIEKGARQIQPFT 378

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F D+D FK++ND +GH  GDK++  +S++L  +      V RLGG+EF    +  +  
Sbjct: 379 LMFLDLDRFKEVNDVYGHQAGDKLLISVSNRLKELVREKDLVARLGGDEFLLFFVDMTID 438

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
            A   AN + + I     +I     I I+ S G+            ++  AD A+Y AK 
Sbjct: 439 NAIKKANKVVEYIAK-PYDIDDKQFI-ISASIGVVNYPQDGTDFEHLLKYADAAMYRAKD 496

Query: 250 SGRNRVVCFS-DIENNTC 266
            GRNR   ++ +I +  C
Sbjct: 497 LGRNRFFLYNQEISDKVC 514


>gi|186682679|ref|YP_001865875.1| response regulator receiver modulated diguanylate cyclase [Nostoc
           punctiforme PCC 73102]
 gi|186465131|gb|ACC80932.1| response regulator receiver modulated diguanylate cyclase [Nostoc
           punctiforme PCC 73102]
          Length = 322

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 11/182 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDY 138
              + ++L      + +L+ ID L+ + N   F          L      LS++  D+D+
Sbjct: 129 QSQLQQKLEAVNLELQRLATIDGLTQIANRRRFEEYLNQEWQRLKRDKRPLSLILCDVDF 188

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           FK  ND +GH VGD+ +  ++  +  +       V R GGEEFA     +  + A  +A 
Sbjct: 189 FKLYNDTYGHRVGDRCLQEIAKAIKDIIKRPGDLVARYGGEEFAVILPNTDTEGATHVAK 248

Query: 198 DLRKIIENSQINISSGP-SIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNR 254
            +   +    I   +   S ++TISAG           +  +I  AD+ALY AK +GR+R
Sbjct: 249 KICHTVRKLAIPHENSEVSPYVTISAGFTTEIPQSDSDLEEMIAAADRALYQAKAAGRDR 308

Query: 255 VV 256
            V
Sbjct: 309 FV 310


>gi|309780693|ref|ZP_07675434.1| GGDEF domain protein [Ralstonia sp. 5_7_47FAA]
 gi|308920375|gb|EFP66031.1| GGDEF domain protein [Ralstonia sp. 5_7_47FAA]
          Length = 510

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 15/213 (7%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGL 112
            L P+  L +I    + L  +S++++   G ++    L+   ++ N + +L++ D L+GL
Sbjct: 296 ALAPWQRLSWI----VGLSSLSVSLAFCAGVWLLAFALRGRVMAENHLRELTQTDPLTGL 351

Query: 113 LNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VV 164
            N  A           L   + +LS++F D D+FK+ ND  GH  GD  + +L+  +   
Sbjct: 352 KNRRALDVALENEWDRLQRNDSRLSVLFIDADHFKRYNDAHGHAQGDVALQYLAQCISKH 411

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                    R GGEEF      + E  A  +A  +R  +E +  ++        T+S G 
Sbjct: 412 ARRRGDLAARYGGEEFVVLLPDTDEAGATRIAEAIRAEVEGAGAHVPDAGVAPFTVSVGC 471

Query: 225 AERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
           A          + +   AD ALY AK+ GRNRV
Sbjct: 472 ATARRASLPSRNALTKAADDALYEAKRKGRNRV 504


>gi|209542675|ref|YP_002274904.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530352|gb|ACI50289.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 710

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 7/178 (3%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQIN 143
              + E   +  ++ +L+  D L+GL N + F + L        +  ++  D+DYFK +N
Sbjct: 272 ADDVTERRQARQQVERLAHYDPLTGLANRALFGARLDGVCVAGHEAILLCIDLDYFKTVN 331

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD ++  ++D+L         + RLGG+EFA       E+E   LA+   +I+
Sbjct: 332 DLYGHAAGDALLRLVADRLRACSRPDDLIARLGGDEFAIIWPNVPEKE--ELAHRAGEIV 389

Query: 204 EN-SQINISSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFS 259
           E  S+  +  G  + I  S G A        S ++   AD ALY AK  GRN    F 
Sbjct: 390 ETISRPYVIDGQHVAIGASIGSASYPADAGSSDLLRQHADIALYKAKALGRNCFHSFD 447


>gi|162148059|ref|YP_001602520.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786636|emb|CAP56218.1| putative signalling protein, GGDEF family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 700

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 7/178 (3%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQIN 143
              + E   +  ++ +L+  D L+GL N + F + L        +  ++  D+DYFK +N
Sbjct: 262 ADDVTERRQARQQVERLAHYDPLTGLANRALFGARLDGVCVAGHEAILLCIDLDYFKTVN 321

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD ++  ++D+L         + RLGG+EFA       E+E   LA+   +I+
Sbjct: 322 DLYGHAAGDALLRLVADRLRACSRPDDLIARLGGDEFAIIWPNVPEKE--ELAHRAGEIV 379

Query: 204 EN-SQINISSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFS 259
           E  S+  +  G  + I  S G A        S ++   AD ALY AK  GRN    F 
Sbjct: 380 ETISRPYVIDGQHVAIGASIGSASYPADAGSSDLLRQHADIALYKAKALGRNCFHSFD 437


>gi|116748952|ref|YP_845639.1| diguanylate cyclase with PAS/PAC sensor [Syntrophobacter
           fumaroxidans MPOB]
 gi|116698016|gb|ABK17204.1| diguanylate cyclase with PAS/PAC sensor [Syntrophobacter
           fumaroxidans MPOB]
          Length = 352

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 11/180 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           +  +L     ++ +L+ +D L+ + N  +    L             ++++  DID+FK 
Sbjct: 168 MEAKLRELNRKLERLATLDGLTRVANRRSLDRFLDLEWRRTRRERAPMALILSDIDHFKL 227

Query: 142 INDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND +GH  GD  +  ++  +          V R GGEEFA     ++   A  +A  + 
Sbjct: 228 YNDTYGHLAGDDCLRAVATAIKECAKRPMDLVARYGGEEFAVVLPNTNADGAVHIAETIC 287

Query: 201 KIIENSQINISSGPSI-HITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +EN ++      +   +T+S G+A      +     ++  AD+ALY AKK GRNRVV 
Sbjct: 288 REVENLRVRHPESSTGEFLTLSCGVAAMVPREESTPEALVAAADEALYEAKKQGRNRVVL 347


>gi|218462597|ref|ZP_03502688.1| putative two-component response regulator protein [Rhizobium etli
           Kim 5]
          Length = 430

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 124/266 (46%), Gaps = 19/266 (7%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSI-FFSIFIATVIFIANIFLFYIGLTPFYGLEY 63
               ++I+        + + +   +YF+  +++  +     +A    F  G+        
Sbjct: 158 ATSAITIFSVPLGWTIAIACYALCLYFAFQWYNPLVEAGSVVAGTLFFSCGII------A 211

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
            +V   ++ I++   + LL       + EL  +  R+ +L+R D L+G+ N    + +L 
Sbjct: 212 TVVARRTMNILA-QKTFLLDCRDQRRVAELADANARLERLARTDPLTGIANRRWMMETLE 270

Query: 124 SYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLG 176
           S          ++++  DID+FK +NDN GH  GD+ +  ++  +          V R G
Sbjct: 271 SLWRHGRETGIVAMLMCDIDHFKALNDNLGHGEGDRCLVKIAGIIQSCVRADRDLVSRHG 330

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEP--- 232
           GEEF        E++A  +A  +R+ +E + + N SS     +T+S G+A +   +    
Sbjct: 331 GEEFLIVLPDVEEEDAVAVAKRIRESVEAAALPNPSSSVGPSVTLSVGVAFKSAVDTGVS 390

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCF 258
           ++ + + AD ALY AK++GRN+V  F
Sbjct: 391 LADLQHEADMALYRAKEAGRNQVSVF 416


>gi|144899370|emb|CAM76234.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 806

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 11/183 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           S + +     S   I  L+  D L+ L N + F   LG           K++++F D+D 
Sbjct: 354 SFTDITAQVESQQHIEHLAHYDPLTDLPNRALFRDRLGHAVTLANRERRKIAVLFLDLDG 413

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAN 197
           FK++ND  GH  GD ++  ++ +L     +   + RLGG+EFA       E  +   +A+
Sbjct: 414 FKKVNDTIGHRAGDSLLVEVARRLKACTRSSDTICRLGGDEFALVLERLDEINDVVPVAD 473

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +   +      +  G  +++  S GI+          T++  AD A+Y AK  G+ R  
Sbjct: 474 KILTSLAA--PFVLEGREVYVGSSIGISLHPIDGNDAETLLKHADTAMYQAKAEGKGRYK 531

Query: 257 CFS 259
            ++
Sbjct: 532 FYA 534


>gi|320451385|ref|YP_004203481.1| diguanylate cyclase/phosphodiesterase domain 1 [Thermus scotoductus
           SA-01]
 gi|320151554|gb|ADW22932.1| diguanylate cyclase/phosphodiesterase domain 1 [Thermus scotoductus
           SA-01]
          Length = 358

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 11/161 (6%)

Query: 104 SRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  D L+GL N              +  Y   LS++  D+D FK+IND  GHPVGD+V+ 
Sbjct: 201 AYTDPLTGLRNRRYLDLVLERELFRVQRYRRPLSLLVLDLDNFKRINDTHGHPVGDRVLK 260

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            L+  L           RLGGEEFA     +   +A  +A+ LR+ +   ++  + G   
Sbjct: 261 ALARCLEEHIRQSDRAVRLGGEEFAVLLAETPLAQAVRMASRLRQAVATLRVFPAEG--- 317

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I++S G+AE   ++   +++ RAD ALY AK+ G+NRV  
Sbjct: 318 -ISVSIGVAEARPEDSPLSLLKRADDALYQAKRRGKNRVEV 357


>gi|323528611|ref|YP_004230763.1| diguanylate cyclase [Burkholderia sp. CCGE1001]
 gi|323385613|gb|ADX57703.1| diguanylate cyclase [Burkholderia sp. CCGE1001]
          Length = 517

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 53/197 (26%), Positives = 93/197 (47%), Gaps = 10/197 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------- 122
           +L +    + +++ ++    L+    +   +++L+  D L+GL N       L       
Sbjct: 313 ALTLTFGAVFVVVSWLLAFALRGKLQAQAALTRLAATDPLTGLGNRRVLDKRLDEEWRRA 372

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFA 181
               + LS +F DID+FK+ ND +GH  GD+ ++ +++ +          V R GGEEFA
Sbjct: 373 RRTGQPLSALFIDIDHFKRFNDTYGHASGDEALSAVAECIATTVRRAVDVVARYGGEEFA 432

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYR 239
                +S   A  +A  +R+ ++   I      S  +T+S G A       E    ++  
Sbjct: 433 VILPDTSADGALAVAEKIRRRVQTHDILHGGDGSPTVTVSVGCATSVPAQGENALDLLAA 492

Query: 240 ADQALYVAKKSGRNRVV 256
           AD+ LY+AK +GRNRV 
Sbjct: 493 ADRQLYLAKAAGRNRVA 509


>gi|114778044|ref|ZP_01452944.1| sensory box/GGDEF family protein [Mariprofundus ferrooxydans PV-1]
 gi|114551650|gb|EAU54203.1| sensory box/GGDEF family protein [Mariprofundus ferrooxydans PV-1]
          Length = 544

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 14/220 (6%)

Query: 52  YIGLTPFYGLEYILVENL--SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCL 109
           +I      G+ + L + +  S ++I++     +  +SG+I K    +   +  ++  D L
Sbjct: 327 FIPRASILGMTHDLRQAILFSNMLIALLAGTAIWLLSGAITK-RKAAEKELVHMAHFDLL 385

Query: 110 SGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GL N       L           +KL+++F D+D FK++ND  GH  GD+V+  ++ +L
Sbjct: 386 TGLPNRPLLYDRLDMAMAHAHREKKKLAVMFLDLDGFKEVNDQLGHQAGDEVLQEVAHRL 445

Query: 163 VVVF-GTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITI 220
                     V RLGG+EFA         Q+   +A  + + +    + +S G   +I  
Sbjct: 446 QQCVGRQTDTVARLGGDEFALLLGTIKDGQDVETIAARVIESL-GEPVMLSDGQPCNIGA 504

Query: 221 SAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           S GIA    H      ++  +D A+Y AK++G+N     S
Sbjct: 505 SIGIAIYPEHGLSQDELLSNSDTAMYSAKENGKNNYRFCS 544


>gi|119946743|ref|YP_944423.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Psychromonas ingrahamii 37]
 gi|119865347|gb|ABM04824.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
          Length = 777

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 92/215 (42%), Gaps = 13/215 (6%)

Query: 64  ILVENLSLVIISITISLLLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  +NL++  +     ++  Y++    +     +  +I+ L+  D L+ L N    + SL
Sbjct: 306 IYAKNLTITAVRDGKGVVSNYVATFRDITTSKAASEKINNLAYFDPLTQLPNRRMLLDSL 365

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     N+  +++F D+D FK +ND  GH VGD ++  ++ +L         V RL
Sbjct: 366 RHVLTISARSNQHCALLFLDLDNFKTLNDTLGHDVGDLLLQQVATRLTDCVREGDIVARL 425

Query: 176 GGEEFAAAALGSSEQEAAILANDLRK----IIENSQINISSGPSIHITISAGIAERCHKE 231
           GG+EF       S Q         +     I E +Q    +    H T S G+      E
Sbjct: 426 GGDEFVVLLENLSLQAIEAANKAKKVAKKIIFELAQYYQLNMHRYHSTTSIGVTIFSGNE 485

Query: 232 P-ISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             I  ++ +AD A+Y +K +GRN    F+     +
Sbjct: 486 TGIEELLKQADIAMYQSKAAGRNTWHFFNKTMQES 520


>gi|127514356|ref|YP_001095553.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella loihica PV-4]
 gi|126639651|gb|ABO25294.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella loihica PV-4]
          Length = 1484

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 11/188 (5%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
            S + E   +   + +L+  D L+GL N S F       I       +KL+++F D+D FK
Sbjct: 1040 SDITERKQTEADLRRLANYDVLTGLPNRSLFAARLAKCIHRAEQTEDKLALIFLDLDRFK 1099

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
             +ND++GH +GD ++   + +L         + R GG+EF           E   L   L
Sbjct: 1100 NVNDSYGHSMGDALLVEAASRLQSCVSENHTLCRFGGDEFVILMRDMVDIDEVNHLCEAL 1159

Query: 200  RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
             + IE     +  G    I+ S G++           +I  ADQA+Y AK+ GR     F
Sbjct: 1160 IRQIEK-PFELY-GREFFISTSIGVSLWPDDAKQPEVLIKNADQAMYHAKEEGRGNFQYF 1217

Query: 259  SDIENNTC 266
            S   N   
Sbjct: 1218 SAERNAEA 1225


>gi|213967691|ref|ZP_03395838.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
 gi|213927467|gb|EEB61015.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
          Length = 829

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 12/190 (6%)

Query: 80  LLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           LL  +++  + +  L  +  R+   +  D L+GL N + F S L S            ++
Sbjct: 364 LLTHFVAVFADISSLKHAQARLDYQAHHDPLTGLPNRTLFESRLQSALLHSEESGSLGAV 423

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQ 190
           +F D+D FK IND+ GHPVGD ++  ++ +L         V RLGG+EF     G     
Sbjct: 424 LFLDLDRFKHINDSLGHPVGDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQPS 483

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKK 249
           +A  +AN L      S    +    ++I+ S G          ++T++  AD A+Y +K 
Sbjct: 484 DAKAIANKLLACF--STPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKA 541

Query: 250 SGRNRVVCFS 259
            GRNRV  ++
Sbjct: 542 QGRNRVESYT 551


>gi|66045221|ref|YP_235062.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63255928|gb|AAY37024.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 730

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 19/214 (8%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +G   +L  ++  + ++ T  LL+   +   +  L  +  +I  L+  D L+GL N +  
Sbjct: 245 HGAPLVLDISVEFITLNNTACLLM---NARDIGALKNAQAQIQHLAYHDPLTGLPNRALL 301

Query: 119 ISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           +  L          N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         
Sbjct: 302 LDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 361

Query: 172 VGRLGGEEFAAAALGSS------EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
           V RLGG+EF     G         ++   LA++LR ++         G  + +T S G+ 
Sbjct: 362 VARLGGDEFVVLICGLEGSQDEVTRQVRELADNLRNLLAEPMF--LDGHRLQVTPSIGVV 419

Query: 226 ERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
                    + ++ RAD ALY AK  GRN    F
Sbjct: 420 LIPDDGLTPADLLKRADIALYRAKDCGRNASQFF 453


>gi|158318807|ref|YP_001511315.1| serine/threonine protein kinase [Frankia sp. EAN1pec]
 gi|158114212|gb|ABW16409.1| serine/threonine protein kinase [Frankia sp. EAN1pec]
          Length = 1643

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 88/206 (42%), Gaps = 16/206 (7%)

Query: 66   VENLSLVIISITISLLLGYISGSILK-------ELFISYNRISQLSRIDCLSGLLNHSAF 118
            +E + L+   + +SL    +  S+ +       +L  +  R+ QLS  D L+GL N    
Sbjct: 1428 LEGIMLIAGQLAVSLDNAQVYTSLERKVAERTWQLAAANQRLEQLSVTDQLTGLANRRRL 1487

Query: 119  ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
               L             ++    DID FK  ND++GH  GD+ I  ++  L V       
Sbjct: 1488 DEVLDAEWHRATRQKTPIAFAMIDIDQFKLYNDHYGHTAGDRCIHQVATCLAVNIRGTDL 1547

Query: 172  VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCH 229
              R GGEEFA    G+    AA +A+ LR  +              +T+S G+       
Sbjct: 1548 AARYGGEEFAIVMAGTDLPVAARIAHRLRSAVAELTEPHPLSTEQIVTVSIGVTAIVPTP 1607

Query: 230  KEPISTIIYRADQALYVAKKSGRNRV 255
             +  +T +  AD ALY AK  GRNRV
Sbjct: 1608 GDNPTTFVELADTALYQAKNGGRNRV 1633


>gi|332528558|ref|ZP_08404546.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Hylemonella gracilis ATCC 19624]
 gi|332042069|gb|EGI78407.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Hylemonella gracilis ATCC 19624]
          Length = 607

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
           G  + E      R+  L+  D L+GL N +     +           + L++ F D+D F
Sbjct: 154 GVDITERKRVEMRVEFLAYHDALTGLPNRALLQDRMQQAIAQAERAQDGLALAFIDLDNF 213

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILAND 198
           K+IND+ GH  GD ++  ++ +L         V R  G+EF     G    Q      + 
Sbjct: 214 KRINDSLGHAAGDALLREIATRLKGCVRESDTVSRQSGDEFIVVLSGVDGVQRCIPTLDK 273

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + + ++  +     G  I  + S G+A           +  +AD A+Y +K +GRN    
Sbjct: 274 IMRTLQ--EPMHFEGKEISASASIGVAFYPQDGTTFDELRKKADLAMYRSKDTGRNAYYF 331

Query: 258 FSDIENNTC 266
           + +  NN  
Sbjct: 332 YDEAMNNDA 340


>gi|291483362|dbj|BAI84437.1| hypothetical protein BSNT_01543 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 359

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 71/235 (30%), Positives = 114/235 (48%), Gaps = 18/235 (7%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           F + I T   I+  F F I L  +         +L   IISI   +L  YI         
Sbjct: 131 FYLLIITNSLISFSFYFLIDLHSYE-------LHLYFWIISIAGGMLSLYIIDH-ETNAH 182

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQINDNF 146
           + + +    +  D L+G+ N   F  +  +  ++         ++++ DID+FK IND +
Sbjct: 183 LLFKQYKFQAHFDFLTGVYNRRKFEETTKALYQQAADTPHFQFALIYMDIDHFKTINDQY 242

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+V+  L  +L           R+GGEEFA      S  +AA +A  +R+ + ++
Sbjct: 243 GHHEGDQVLKELGLRLKQSIRNTDPAARIGGEEFAVLLPNCSLDKAARIAERIRRTVSDA 302

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            I +++G  + +TIS G A   +  E   ++   ADQ LY AK++GRNRV CFS+
Sbjct: 303 PIVLTNGEELSVTISLGAAHYPNNTEQPGSLPILADQMLYKAKETGRNRV-CFSE 356


>gi|239787383|emb|CAX83859.1| conserved uncharacterized protein [uncultured bacterium]
          Length = 922

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 83/197 (42%), Gaps = 12/197 (6%)

Query: 80  LLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSI 131
           ++  YIS    +        R+ + +  D L+GL N    +  L         YN K+++
Sbjct: 466 VITHYISVKEDISIRKEYEERLVRQANYDALTGLPNRILAMDRLKQAIAQAQRYNRKVAL 525

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQ 190
           +  D+D FK++ND  GH  GD ++   + +LV        V RLGG+EF       +   
Sbjct: 526 MLLDLDDFKKVNDTLGHAAGDLLLKEAALRLVDCLREGDTVARLGGDEFVLLLPDLTDTS 585

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKK 249
            A ++A  +      +Q     G   +I  S GIA     E     ++  AD A+Y +K+
Sbjct: 586 SAEVVAEKILAAC--NQPFDVGGHEAYIAGSIGIAIFPDDERDPILLMRNADAAMYRSKR 643

Query: 250 SGRNRVVCFSDIENNTC 266
            G+     F+   N   
Sbjct: 644 EGKGVFRYFTPEMNARA 660


>gi|160877155|ref|YP_001556471.1| PAS/PAC and GAF sensor(s)-containing diguanylate
            cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|160862677|gb|ABX51211.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS195]
 gi|315269359|gb|ADT96212.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS678]
          Length = 1497

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 11/191 (5%)

Query: 85   ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
            +  S + E   +   + +L+  D L+GL N S F S L           EKL+++F D+D
Sbjct: 1044 VVFSDITERKRTEADLRRLANYDVLTGLPNRSLFSSRLLQSIQAAQQTGEKLALLFLDLD 1103

Query: 138  YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILA 196
             FK +ND++GH +GD ++   S +L     +   + R GG+EF      + S  E   +A
Sbjct: 1104 RFKHVNDSYGHSMGDALLVEASSRLQSCIASEHMLCRFGGDEFVILLRNANSIDEINHIA 1163

Query: 197  NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
              L + I  +   +  G   +I+ S GI+            I  AD A+Y AK+ GR   
Sbjct: 1164 ERLLEQI-VAPFKLY-GREFYISTSIGISIWPDDAVQPEAFIKNADLAMYHAKEEGRGNF 1221

Query: 256  VCFSDIENNTC 266
              +S   N   
Sbjct: 1222 QYYSSERNAQA 1232


>gi|91777889|ref|YP_553097.1| diguanylate cyclase [Burkholderia xenovorans LB400]
 gi|91690549|gb|ABE33747.1| Putative diguanylate cyclase (GGDEF domain) [Burkholderia
           xenovorans LB400]
          Length = 387

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 15/175 (8%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFG 147
               R+ QL   D L+GL N   F   L         Y   ++ +F DID FK+IND +G
Sbjct: 201 AHRERLKQLGMTDSLTGLANRRYFDERLREEVMRAVRYRMPVACLFIDIDSFKRINDTYG 260

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+ +A ++  +         V R GGEEFAA   G    +A  +A  +R  +E   
Sbjct: 261 HQTGDRALAAVAACVRQQVRLGDTVARYGGEEFAALLQG-DRADALTVAERVRLAVERLA 319

Query: 208 INISSGPSIHITISAGIAERCHKEPIST-------IIYRADQALYVAKKSGRNRV 255
           +    G  I +T+S G+A R      +        II  AD+A+Y AK++GRNR+
Sbjct: 320 LQDDHGERIALTVSIGVAARMVSGTPTEAAMLGGAIIEEADRAMYQAKRNGRNRI 374


>gi|89097342|ref|ZP_01170232.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor [Bacillus sp. NRRL B-14911]
 gi|89088165|gb|EAR67276.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor [Bacillus sp. NRRL B-14911]
          Length = 1106

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 9/183 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQI 142
           + +     +  ++  L+  D ++GL N   F  +L     G   EK +I++ D+D FK I
Sbjct: 515 ADITAQKQAEAQMEFLAYHDYMTGLPNRRLFDQTLNGLFEGKNPEKFAIMYLDLDRFKHI 574

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRK 201
           ND  GHP+GD+V+   +D++        F  R+GG+EFA  A    S ++A+ LA  +  
Sbjct: 575 NDTLGHPIGDQVLKEAADRITASIRKGDFASRMGGDEFAIIARNVESIEDASRLAAKITG 634

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            I+  +     G  + IT S GI+    +      +   AD ALY AK+ G++    ++ 
Sbjct: 635 TIQ--KPYEIEGYELFITASIGISLYPNNGSTPEELARNADAALYHAKQMGKSSHQVYNA 692

Query: 261 IEN 263
             N
Sbjct: 693 SMN 695


>gi|152989945|ref|YP_001355667.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
 gi|151421806|dbj|BAF69310.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
          Length = 844

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 10/193 (5%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLG 123
           ++++   +S LL  +    +K ++     +   +  D L+ L N   F            
Sbjct: 398 ILVVESVLSTLLNVVGS--VKAIYKYTKDLEYYATRDPLTNLYNQRVFWELISYEEERAK 455

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            ++ K S++  D+D FK +ND +GH  GD+ +  ++D L         V R GG+EF   
Sbjct: 456 RHHYKFSLLVIDLDNFKLVNDTYGHDFGDEFLNKIADLLQDCVRPGDIVARYGGDEFVIV 515

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQ 242
              + EQ A I+AN + K  E   I+   G  I+  +S G+A    H + I  +   AD 
Sbjct: 516 LPETDEQGAFIVANRILKNAEKYSIHTPDGKIINPRLSIGVATCPDHADNIKDLFSIADH 575

Query: 243 ALYVAKKSGRNRV 255
            +Y AK +G+ +V
Sbjct: 576 MMYKAKSAGKAQV 588


>gi|218891972|ref|YP_002440839.1| putative sensory box protein [Pseudomonas aeruginosa LESB58]
 gi|254235109|ref|ZP_04928432.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126167040|gb|EAZ52551.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|218772198|emb|CAW27977.1| putative sensory box protein [Pseudomonas aeruginosa LESB58]
          Length = 864

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 10/187 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYF 139
           + + + +   ++ +I  LS  D L+GL N +     L            ++++  D+D F
Sbjct: 407 TAADITDEVEAHAKIQHLSLHDALTGLPNRNKLFQFLERLLAEKAGKSPVAVLMLDLDRF 466

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILAND 198
           K IND  GHP GD V+  ++++L         V RLGG+EF   +   S + E     + 
Sbjct: 467 KPINDQHGHPAGDAVLYAIAERLRASTRDQDMVARLGGDEFVVVSTHVSSKLEIEKFCSR 526

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L  +I         G S H+  S G+A    H      ++  AD A+Y AK +GRN    
Sbjct: 527 LIDVINREVAY--EGHSFHVGASIGVALAPEHGGDPRGLLRCADVAMYEAKAAGRNTWRF 584

Query: 258 FSDIENN 264
           + +  ++
Sbjct: 585 YLEAMDS 591


>gi|90021242|ref|YP_527069.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89950842|gb|ABD80857.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 234

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 80/176 (45%), Gaps = 10/176 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           +++L      +++    D L+GL N   F       +       +  S+   D+D+FK +
Sbjct: 35  IQQLESRIAELTEQVNTDSLTGLYNRKHFNESIAQELERTQRSRQPTSLALIDLDHFKVV 94

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD+V+  ++  +           R GGEE A     + +  A+ +A  LR+ 
Sbjct: 95  NDTHGHIAGDEVLKAVAKAIGNTIRKLDIACRYGGEEIAVIFPSTYQLVASQVAERLRQA 154

Query: 203 IENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVV 256
           IEN  +N   G +I IT S G+       KE     I R DQ LY AK  GRNRV 
Sbjct: 155 IENCTVNH-GGSTIPITASIGVDTYTAQSKETAVQFIERVDQLLYDAKHLGRNRVA 209


>gi|91781813|ref|YP_557019.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
 gi|91685767|gb|ABE28967.1| Putative diguanylate cyclase/phosphodiesterase(GGDEF & EAL domains)
           with PAS/PAC sensor(s) [Burkholderia xenovorans LB400]
          Length = 1036

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 88/187 (47%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + +L     ++   +  D L+ L N +     L         +++ +++VF D+D FK 
Sbjct: 588 DVTDLMRYQEQLEYQANYDSLTRLPNRNLLRDRLQHALIVAQRHHKGVAVVFIDLDGFKN 647

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDLR 200
           +ND+ GH VGD++++ ++++L     T   V R GG+EF      + ++++ I     +R
Sbjct: 648 VNDSLGHSVGDRLLSVVAERLARCTRTSDTVARHGGDEFVIVMTDTVDEKSLIAWMERVR 707

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +  S+     G  +++  S G +      E   T++ +AD A+Y AK  GRN    + 
Sbjct: 708 --VSISEPVWLDGTELYVGCSMGASLFPQDGEDAETLMKKADLAMYRAKDMGRNTFQFYQ 765

Query: 260 DIENNTC 266
              N + 
Sbjct: 766 PEMNASA 772


>gi|322616865|gb|EFY13773.1| hypothetical protein SEEM315_15849 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618104|gb|EFY14996.1| hypothetical protein SEEM971_05223 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625775|gb|EFY22594.1| hypothetical protein SEEM973_09022 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626225|gb|EFY23035.1| hypothetical protein SEEM974_05820 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633831|gb|EFY30571.1| hypothetical protein SEEM201_02229 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638985|gb|EFY35678.1| hypothetical protein SEEM202_10223 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322644190|gb|EFY40735.1| hypothetical protein SEEM054_02762 [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649513|gb|EFY45945.1| hypothetical protein SEEM675_03416 [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655420|gb|EFY51728.1| hypothetical protein SEEM965_14143 [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660824|gb|EFY57055.1| hypothetical protein SEEM19N_10368 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662880|gb|EFY59087.1| hypothetical protein SEEM801_18907 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668064|gb|EFY64223.1| hypothetical protein SEEM507_21371 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674175|gb|EFY70269.1| hypothetical protein SEEM877_13603 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675471|gb|EFY71545.1| hypothetical protein SEEM867_03537 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683114|gb|EFY79130.1| hypothetical protein SEEM180_11167 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686808|gb|EFY82786.1| hypothetical protein SEEM600_19160 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195300|gb|EFZ80480.1| hypothetical protein SEEM581_08859 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199193|gb|EFZ84288.1| hypothetical protein SEEM501_00435 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202994|gb|EFZ88027.1| hypothetical protein SEEM460_02776 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207449|gb|EFZ92397.1| hypothetical protein SEEM020_07058 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323209938|gb|EFZ94850.1| hypothetical protein SEEM6152_06543 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217432|gb|EGA02151.1| hypothetical protein SEEM0077_21207 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220568|gb|EGA05019.1| hypothetical protein SEEM0047_12196 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226618|gb|EGA10820.1| hypothetical protein SEEM0055_15959 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231454|gb|EGA15567.1| hypothetical protein SEEM0052_14571 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235895|gb|EGA19974.1| hypothetical protein SEEM3312_13539 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240464|gb|EGA24507.1| hypothetical protein SEEM5258_10831 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245357|gb|EGA29357.1| hypothetical protein SEEM1156_16481 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246723|gb|EGA30695.1| hypothetical protein SEEM9199_07616 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253578|gb|EGA37406.1| hypothetical protein SEEM8282_15393 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257716|gb|EGA41399.1| hypothetical protein SEEM8283_00602 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260379|gb|EGA43995.1| hypothetical protein SEEM8284_20528 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266830|gb|EGA50316.1| hypothetical protein SEEM8285_18914 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269036|gb|EGA52492.1| hypothetical protein SEEM8287_03697 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 376

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 125/266 (46%), Gaps = 28/266 (10%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIAN---------------IFLFYIGLTPFYGLEY 63
           + S+  + F++++ + F+  ++ ++ +                 + L+   L     L  
Sbjct: 110 MWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLLALLLFIVPLWLTALLASVQLNQ 169

Query: 64  ILVENLSLVIISITISLLLG-YISGSILKELFISYN-------RISQLSRIDCLSGLLNH 115
            +     LV +++T  L+ G +I      E ++ Y        R+  ++  D L+G  N 
Sbjct: 170 YVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANR 229

Query: 116 SAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MF 171
            +  S LG      E  +++  D+DYFK  ND++GH  GD  +A ++  +     TP   
Sbjct: 230 RSMESFLGDALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVACVVKRSIRTPADL 289

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHK 230
           V R GGEEF      SS  EAA++A  ++  +  + +  ++   S  +T+S GI      
Sbjct: 290 VARYGGEEFVVVLPSSSLNEAALVAQRIQTNLRETALPHAASAVSETVTVSMGITLSTAG 349

Query: 231 EPISTIIYRADQALYVAKKSGRNRVV 256
           + ++ II RAD+ALY AK+ GRNR V
Sbjct: 350 DTVTGIIARADEALYRAKQQGRNRWV 375


>gi|296161002|ref|ZP_06843813.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. Ch1-1]
 gi|295888701|gb|EFG68508.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. Ch1-1]
          Length = 1036

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 87/187 (46%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + +L     ++   +  D L+ L N +     L          ++ +++VF D+D FK 
Sbjct: 588 DVTDLMRYQEQLEYQANYDSLTRLPNRNLLRDRLQHALIVAQRQHKGVAVVFIDLDGFKN 647

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDLR 200
           +ND+ GH VGD++++ ++++L     T   V R GG+EF      + ++++ I     +R
Sbjct: 648 VNDSLGHSVGDRLLSVVAERLARCTRTSDTVARHGGDEFVIVMTDTVDEQSLIAWMERVR 707

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +  S+     G  +++  S G +      E   T++ +AD A+Y AK  GRN    + 
Sbjct: 708 --VSISEPVWLDGTELYVGCSMGASLFPQDGEDAETLMKKADLAMYRAKDMGRNTFQFYQ 765

Query: 260 DIENNTC 266
              N + 
Sbjct: 766 PEMNASA 772


>gi|78485566|ref|YP_391491.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
 gi|78363852|gb|ABB41817.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
          Length = 815

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 77/187 (41%), Gaps = 12/187 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           + E   +   I  L+  D L+ L N       L              +++F D+D FK +
Sbjct: 372 VTERKKAEEAIQNLAFYDPLTQLPNRRLLQDRLQQEMAVTERSKHVCALMFIDLDDFKTL 431

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL--GSSEQEAAILANDLR 200
           ND  GH  GDK++  ++ +L         V R+GG+EF           ++AA  A  + 
Sbjct: 432 NDTLGHDTGDKLLRQVATRLRENVREFDTVARIGGDEFVLILPSLDDDWKDAATHAELVA 491

Query: 201 KIIEN--SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +    ++  +      H T S G+     H+E +  ++  AD A+Y AK  GRN V  
Sbjct: 492 QKVLRVLNKPYLLDSTPYHSTPSIGVKLFSGHQETLEELLKHADLAMYQAKAKGRNTVRF 551

Query: 258 FSDIENN 264
           +      
Sbjct: 552 YDTTMQE 558


>gi|89094950|ref|ZP_01167881.1| PAS:GGDEF protein [Oceanospirillum sp. MED92]
 gi|89080816|gb|EAR60057.1| PAS:GGDEF protein [Oceanospirillum sp. MED92]
          Length = 892

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 57/210 (27%), Positives = 100/210 (47%), Gaps = 12/210 (5%)

Query: 64  ILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  ++L++  +  +   +  Y+ + + + +       I QL+  D L+GL N  +    L
Sbjct: 415 IYPQHLTITAVQTSAGEITNYVGAFTDITQRKQDEADIHQLAFYDSLTGLPNRRSLQERL 474

Query: 123 G------SYNEKL-SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +  +L ++ F D+D FK +ND  GH  GDK++  ++++L         V RL
Sbjct: 475 DSALSSCRHTRQLGAVFFIDLDNFKNLNDTAGHDQGDKLLVEVANRLNSCVRNADMVARL 534

Query: 176 GGEEFAAAALGSSEQEAAILA---NDLRKIIENSQINISSG-PSIHITISAGIAERCHKE 231
           GG+EF          E+ +LA   + + K+I   Q  ++ G  + H T S GIA    K+
Sbjct: 535 GGDEFIVILENLGVDESNVLAQVKDIVAKVILTIQAPLTIGTQAYHPTCSIGIALFSEKD 594

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
               ++ R+D A+Y AK SG+N    F  +
Sbjct: 595 FSDEVMKRSDMAMYQAKSSGKNTYRFFDPV 624


>gi|330873862|gb|EGH08011.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 712

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 96/197 (48%), Gaps = 14/197 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++          ++ L +
Sbjct: 254 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 310

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQ 190
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF     G    +
Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           +AA +A  L + +   +    +G  I +  S GIA        +  ++  AD A+Y AK+
Sbjct: 371 QAAKIAEKLIERVSGRRQ--VNGVDITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKR 428

Query: 250 SGRNRVVCFSDIENNTC 266
           +GR +   +    N   
Sbjct: 429 AGRQQYRFYDQNMNGRA 445


>gi|119947315|ref|YP_944995.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
 gi|119865919|gb|ABM05396.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
          Length = 727

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 58/192 (30%), Positives = 97/192 (50%), Gaps = 12/192 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           +    + E   +  ++++L++ DCL+GL N + F       IS       KL+++F D+D
Sbjct: 256 LVFQDISERKKTEQQLTRLAQYDCLTGLPNRALFTSLLSQAISRSDRRKNKLALLFLDLD 315

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAIL 195
            FKQ+ND+ GH VGD ++  ++ +L +       V RLGG+EF      + S   +AA L
Sbjct: 316 RFKQVNDSLGHDVGDLLLQQVAQRLQLATLEGGTVSRLGGDEFMVILEEVNSESHKAAKL 375

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
           A  +   + ++  NI  G  + I+ S GIA        I +++ RAD A+Y AK+ GRN 
Sbjct: 376 AQKMITSL-DAPFNIL-GREVLISTSIGIALCSGSTQCIDSLLKRADMAMYRAKEQGRNN 433

Query: 255 VVCFSDIENNTC 266
              ++       
Sbjct: 434 FQFYTAELQQQA 445


>gi|331005857|ref|ZP_08329209.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [gamma
           proteobacterium IMCC1989]
 gi|330420301|gb|EGG94615.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [gamma
           proteobacterium IMCC1989]
          Length = 330

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 104/218 (47%), Gaps = 17/218 (7%)

Query: 57  PFYGLEYILVENLSLVII------SITISLLLGYISGSILK--ELFISYNRISQLSRIDC 108
           P  G    + +N + + I      + +I +++  ++   +   EL      +  +S+ D 
Sbjct: 104 PITGKAEFMYQNSTFIPIQGLDGSTDSICVIIYDVTEQAINNIELEKVNETLEYISKTDG 163

Query: 109 LSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GLLN   + + L         Y+E  S++ FDID+FK++NDN+GHP GD+VI   +D 
Sbjct: 164 LTGLLNRKTWENLLEKEYERESRYHENCSLIMFDIDHFKKVNDNYGHPAGDEVIRQTADI 223

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +          GR GGEE+      +    A +LA  +RK I            I+ T+S
Sbjct: 224 IRHSIRKTDIAGRYGGEEYVILLPHTPIDSAYVLAERIRKKIAAKPACYED-QVINYTVS 282

Query: 222 AGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            G+A      +  +  I  ADQALY +K++GRN    +
Sbjct: 283 LGVAAFDPSLKSPTNWIDFADQALYQSKQAGRNATNIY 320


>gi|226946467|ref|YP_002801540.1| transmembrane sensor cyclic di-GMP signal transduction protein
           [Azotobacter vinelandii DJ]
 gi|226721394|gb|ACO80565.1| transmembrane sensor cyclic di-GMP signal transduction protein
           [Azotobacter vinelandii DJ]
          Length = 513

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 12/182 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
             + +EL      +  L   D L+GL N       +            +L++   D+D F
Sbjct: 326 ARLNRELMERQGELDGLVYRDALTGLPNRRLLFDRIYMAIGQQRRQGGRLAVCMLDLDGF 385

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND FGH  GD ++  ++  +  V      + R GG+EF     G    +   L   L
Sbjct: 386 KTVNDRFGHQAGDLLLKEVAQCMQAVLRPSDTLARFGGDEFVVVLPGVG--DGKTLDGIL 443

Query: 200 RKIIEN--SQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +++IE     + +  G  S+ ++ S G+A    +  I+ ++  ADQA+Y AK++G+    
Sbjct: 444 KRLIEQVSQPMALDGGQSSVAVSASIGVAFAGERSDINELLREADQAMYEAKRAGKACYR 503

Query: 257 CF 258
            F
Sbjct: 504 IF 505


>gi|153839620|ref|ZP_01992287.1| putative sensory box/ggdef family protein [Vibrio parahaemolyticus
           AQ3810]
 gi|260361492|ref|ZP_05774539.1| diguanylate cyclase [Vibrio parahaemolyticus K5030]
 gi|260878177|ref|ZP_05890532.1| diguanylate cyclase [Vibrio parahaemolyticus AN-5034]
 gi|260895463|ref|ZP_05903959.1| diguanylate cyclase [Vibrio parahaemolyticus Peru-466]
 gi|260903328|ref|ZP_05911723.1| diguanylate cyclase [Vibrio parahaemolyticus AQ4037]
 gi|149746859|gb|EDM57847.1| putative sensory box/ggdef family protein [Vibrio parahaemolyticus
           AQ3810]
 gi|308088054|gb|EFO37749.1| diguanylate cyclase [Vibrio parahaemolyticus Peru-466]
 gi|308094113|gb|EFO43808.1| diguanylate cyclase [Vibrio parahaemolyticus AN-5034]
 gi|308109540|gb|EFO47080.1| diguanylate cyclase [Vibrio parahaemolyticus AQ4037]
 gi|308112849|gb|EFO50389.1| diguanylate cyclase [Vibrio parahaemolyticus K5030]
          Length = 329

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/183 (34%), Positives = 96/183 (52%), Gaps = 9/183 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           S   + +  +   R+ QLS  D L+GLLN  AFIS+L          ++ LS +  DID+
Sbjct: 129 SVRDITKTHLLEQRLKQLSETDALTGLLNRRAFISNLDNAIIQHTKRSQTLSCLMIDIDH 188

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND+ GH  GD VI  ++     V     F+GRLGGEEFA     ++  +A  +A  
Sbjct: 189 FKDINDSVGHFSGDHVITRIAHVCQGVIRGSDFIGRLGGEEFAVILTDTNAIQAYEVAER 248

Query: 199 LRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +R+ I+ + I       I  T+S G+AE    +     ++  AD+A+Y +K SGRN+V  
Sbjct: 249 IRQAIQAT-ICHVDDVEITTTVSIGVAELNSQQSNAKELLIEADKAMYYSKHSGRNQVTL 307

Query: 258 FSD 260
             +
Sbjct: 308 AYE 310


>gi|85710883|ref|ZP_01041944.1| Intracellular signaling protein (GAF,GGDEF,EAL domains) [Idiomarina
           baltica OS145]
 gi|85695287|gb|EAQ33224.1| Intracellular signaling protein (GAF,GGDEF,EAL domains) [Idiomarina
           baltica OS145]
          Length = 866

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 84/188 (44%), Gaps = 12/188 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEK-----LSIVFFDIDYF 139
           S ++       R+   +  D L+GL N + F  SL     +  +      +++F D+D F
Sbjct: 424 SEIERRKKIEARLFHDAHHDNLTGLPNRALFTESLQQALAHQRRHPEHFFAVLFLDLDRF 483

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILAND 198
           K IND  GH  GD+ +  +S ++         V RLGG+EF       SS  +A  +A  
Sbjct: 484 KNINDTLGHSAGDEFLLDVSKRIQTCVRENDLVARLGGDEFVILLDTMSSVDDAREIAKR 543

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +      I +G   +   S GIA     ++ +  ++  AD A+Y AK  GR R V 
Sbjct: 544 IISSLNA--PFILNGHEHYSGASIGIAICDDSQDSVERLLRDADAAMYEAKSQGRGRYVV 601

Query: 258 FSDIENNT 265
           F +  + T
Sbjct: 602 FDNTMHRT 609


>gi|330963771|gb|EGH64031.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 712

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 96/197 (48%), Gaps = 14/197 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++          ++ L +
Sbjct: 254 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 310

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQ 190
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF     G    +
Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           +AA +A  L + +   +    +G  I +  S GIA        +  ++  AD A+Y AK+
Sbjct: 371 QAAKIAEKLIERVSGRRQ--VNGVDITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKR 428

Query: 250 SGRNRVVCFSDIENNTC 266
           +GR +   +    N   
Sbjct: 429 AGRQQYRFYDQNMNGRA 445


>gi|107101499|ref|ZP_01365417.1| hypothetical protein PaerPA_01002542 [Pseudomonas aeruginosa PACS2]
          Length = 844

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 10/187 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYF 139
           + + + +   ++ +I  LS  D L+GL N +     L            ++++  D+D F
Sbjct: 387 TAADITDEVEAHAKIQHLSLHDALTGLPNRNKLFQFLERLLAEKAGKSPVAVLMLDLDRF 446

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILAND 198
           K IND  GHP GD V+  ++++L         V RLGG+EF   +   S + E     + 
Sbjct: 447 KPINDQHGHPAGDAVLYAIAERLRASTRDQDMVARLGGDEFVVVSTHVSSKLEIEKFCSR 506

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L  +I         G S H+  S G+A    H      ++  AD A+Y AK +GRN    
Sbjct: 507 LIDVINREVAY--EGHSFHVGASIGVALAPEHGGDPRGLLRCADVAMYEAKAAGRNTWRF 564

Query: 258 FSDIENN 264
           + +  ++
Sbjct: 565 YLEAMDS 571


>gi|78776421|ref|YP_392736.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78496961|gb|ABB43501.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM
           1251]
          Length = 539

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 85/184 (46%), Gaps = 11/184 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVF 133
           +L  I+   +   ++    +  ++  D L+ L N +     L             LS++F
Sbjct: 359 VLYLITFDEITNEYVKIKELEHMASTDALTKLFNRTKLNDVLEKEMALSRTVPSPLSVIF 418

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DIDYFK +ND +GH  GD+V+  +++ +           R GGEEF      +   EA+
Sbjct: 419 LDIDYFKAVNDTYGHDAGDRVLINIANIITSSIRAGDIAARWGGEEFMIILQATPVSEAS 478

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +L   LR  +E             ITIS G+ E  + E   + I R D+ALY AK+ GRN
Sbjct: 479 VLGEKLRARVEGHLFETVG----KITISLGVTEYINAESEESFIKRVDEALYEAKERGRN 534

Query: 254 RVVC 257
           +++ 
Sbjct: 535 KIII 538


>gi|78358456|ref|YP_389905.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78220861|gb|ABB40210.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 935

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 108/226 (47%), Gaps = 20/226 (8%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISG--------SILKELFISYNRISQLSRIDCL 109
           ++G  +   +N S     +TIS +              S +  L  +  ++ +++  D L
Sbjct: 333 WHGELWCRRKNGSQFAALLTISAVPDMRGNIEHYAAMFSDITALKENQQQLERVAHYDLL 392

Query: 110 SGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GL N       L             L++VF D+D FK++ND  GH VGDK+++ LS ++
Sbjct: 393 TGLPNRLLLGDRLKQAIRQTRRRGMHLAVVFIDLDGFKEVNDQHGHAVGDKLLSVLSRRM 452

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITIS 221
             V      + RLGG+EF A  L     + ++    L ++IE +   +  G ++  ++ S
Sbjct: 453 TQVLREDDTLARLGGDEFVAVLL--DLPDISVSVPILDRLIEVAAQPVPIGDALCEVSAS 510

Query: 222 AGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            G++     E I    ++ +ADQA+Y AK++G+NR   F   ++ T
Sbjct: 511 IGVSYYPQGEDIDADQLLRQADQAMYRAKQAGKNRYHVFDTEKDRT 556


>gi|330810075|ref|YP_004354537.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378183|gb|AEA69533.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 857

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 9/188 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           + + + +   +  +I  LS  D L+GL N +     L  +        L+++  D+D FK
Sbjct: 418 TATDITDELRALAQIKHLSLHDPLTGLANRNRLFDCLREHLGRADRPPLALLNLDMDRFK 477

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND+ GH VGDKV+  ++  L         V RLGG+EF          +A+ L     
Sbjct: 478 PVNDSLGHAVGDKVLKEVAHILQQNVRGTDLVARLGGDEFVIVMPDPG--DASDLDQLCA 535

Query: 201 KIIENSQINIS-SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           ++I+  Q  +   G ++++ +S G+A  +   E    ++  AD ALY AK +GRN    +
Sbjct: 536 RLIDCMQRPMHLDGNTLYLGVSIGVAWSQPGDERADELLRHADIALYAAKAAGRNTWRVY 595

Query: 259 SDIENNTC 266
            +   N  
Sbjct: 596 VEAMGNLA 603


>gi|297567483|ref|YP_003686455.1| diguanylate cyclase [Meiothermus silvanus DSM 9946]
 gi|296851932|gb|ADH64947.1| diguanylate cyclase [Meiothermus silvanus DSM 9946]
          Length = 354

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 11/173 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           +  +L  +   + QL+  D L+ L N           +     Y    +++  D+D+FK+
Sbjct: 174 VYAQLRENMLIMEQLAHTDHLTRLTNRRGLEPLLKQELQRAERYGLPFAVLLADLDHFKE 233

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH +GD+V+  ++ +L         V R GGEEF   A  +   +A  LA  L +
Sbjct: 234 VNDRHGHAIGDQVLREVAPRLDHNLRQADTVARWGGEEFLILAPTTDLAQAGQLAERLIE 293

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +I +  +      SI +TIS G++     + + +++ RAD+ALY AK  GRNR
Sbjct: 294 VIRSEPVV----GSIPVTISIGVSCYRAGDSLESLLQRADEALYRAKALGRNR 342


>gi|289208212|ref|YP_003460278.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
 gi|288943843|gb|ADC71542.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
          Length = 842

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 12/183 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             + +      RI   +  D L+GL N       L         +  +++++  D+D+FK
Sbjct: 398 RDITDRQRREARIQHQATHDSLTGLPNRWLLHDRLAQSIAHASRHEHRIAVMLLDLDHFK 457

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND FGH  GD+++  ++ +L    GT   +GR GG+EF       +++    +    +
Sbjct: 458 MINDTFGHHEGDELLREVAQRLKDAAGTDATIGRFGGDEFMILLPEITDE--LQVGERGQ 515

Query: 201 KIIENSQINISSGPSIHI--TISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           +I+        +GP+     + S GIA         +T++  AD A+Y AK+SGRN    
Sbjct: 516 EILAQFDRPFHTGPTRQFSSSASLGIALFPQDARDANTLVRYADMAMYEAKRSGRNTYAF 575

Query: 258 FSD 260
           +S+
Sbjct: 576 YSE 578


>gi|254457390|ref|ZP_05070818.1| response regulator PleD [Campylobacterales bacterium GD 1]
 gi|207086182|gb|EDZ63466.1| response regulator PleD [Campylobacterales bacterium GD 1]
          Length = 292

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 82/173 (47%), Gaps = 13/173 (7%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L    + +   +  D L+GL N +          S     N+KLS++  DID+FK +ND 
Sbjct: 124 LKKQRDELIYNAVHDQLTGLYNRNHLVLEGERKFSRAFRKNDKLSVMMIDIDHFKIVNDT 183

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD V+  ++  L+    T  F  R GGEEF     G S+++A   A  LRK IE 
Sbjct: 184 HGHLTGDLVLKEVASLLIQDNRTEDFSARFGGEEFIVVLDGCSKEDAKEKAETLRKKIEE 243

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
                     I +T S GI+E         +++  AD ALY AK SGRN VV 
Sbjct: 244 LNP-----ADIKVTASFGISELNKEHNSFESLLRAADSALYSAKSSGRNCVVV 291


>gi|254459022|ref|ZP_05072445.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207084293|gb|EDZ61582.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 829

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 71/257 (27%), Positives = 115/257 (44%), Gaps = 16/257 (6%)

Query: 15  HEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVII 74
            +K L +       I F I    FI +++ I N  +  I L        I+ +      I
Sbjct: 309 FDKTLRNNRQSLVAILFFIIIVTFITSLVIINN--MLSIPLKKILNGIEIISKGNYENRI 366

Query: 75  SITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------S 124
            IT    LG IS     +  E+     ++ +L+ +D L+ + N   FI +L         
Sbjct: 367 DITSKDELGAISSQFNNMADEIAKRETQLDELAHVDPLTKIPNRVMFIETLEKSISRAKR 426

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
            N KL++ F D+D FK +ND  GH VGDK++  ++  L +V      + R+GG+EF    
Sbjct: 427 LNTKLAVFFLDLDDFKNVNDTLGHYVGDKLLIEIAKNLSIVMRESDTISRIGGDEFNILI 486

Query: 185 LGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHK-EPISTIIYRADQ 242
                +  + +     K I+   I +     +I I+ S GI+      E  +T++  AD 
Sbjct: 487 --EDLESLSHIGEIAEKFIKQMTIPLYIENNAITISGSIGISIYPDDGEDTTTLLKNADL 544

Query: 243 ALYVAKKSGRNRVVCFS 259
           A+Y AK +GRN+   FS
Sbjct: 545 AMYKAKDNGRNQYSFFS 561


>gi|91775467|ref|YP_545223.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus
           KT]
 gi|91709454|gb|ABE49382.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Methylobacillus flagellatus KT]
          Length = 722

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 91/212 (42%), Gaps = 24/212 (11%)

Query: 70  SLVIISITISLLLG-------YIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           +L  +  TI   LG       YI+  + + +  I    + +++  D L+GL N    +  
Sbjct: 249 TLYWVHTTIVPFLGEDGVPVQYIAIRADITQRKILEQSVQRMALYDDLTGLPNRRLMVER 308

Query: 122 LG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L          +   +++F D+D FK+IND  GH  GD+++  +  +L         V R
Sbjct: 309 LQMIREACVRSHRHGAVMFLDLDNFKEINDTHGHEQGDRLLKQVGQRLRENIRQVDTVAR 368

Query: 175 LGGEEFAAAALGSSEQ------EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
            GG+EF        E       +A  +A  LR  +  S   I +   +H + S GI    
Sbjct: 369 AGGDEFIILLADLDEDPAKATAQAYNVAEKLRNAL--STPYIFNRIVLHTSTSVGIVMFS 426

Query: 229 HKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            K  P + +   AD ALY AK  G+NR+  F 
Sbjct: 427 DKAKPKTELFKHADMALYRAKAQGKNRISMFD 458


>gi|283777873|ref|YP_003368628.1| diguanylate cyclase [Pirellula staleyi DSM 6068]
 gi|283436326|gb|ADB14768.1| diguanylate cyclase [Pirellula staleyi DSM 6068]
          Length = 352

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 83/177 (46%), Gaps = 8/177 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDID 137
           I+ S L       N+I   +R D L+GL N  AF             +   L +V  D+D
Sbjct: 112 IAESTLARQASEINQIMNEARTDALTGLANRRAFDDEFARRLSQWKRHGTALMLVLVDVD 171

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK +ND +GH  GD V+  L   L         V R GGEEFA   + S  +  AI   
Sbjct: 172 HFKPVNDQYGHQAGDAVLKQLGKLLSAAVRDTDLVARYGGEEFAILLVDSGIEGGAITIA 231

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            +++ I +S      G ++ IT S G+A+    +    +I RAD+ALY AK  GRN 
Sbjct: 232 RIQQAIASSTFRH-EGVALRITASFGLAQPSASDDQKQLIARADEALYAAKHGGRNC 287


>gi|242278020|ref|YP_002990149.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfovibrio
           salexigens DSM 2638]
 gi|242120914|gb|ACS78610.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfovibrio
           salexigens DSM 2638]
          Length = 495

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 9/174 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
            +++      R+   +  D L+G+ N   F   L            +LS++FFDID+FK+
Sbjct: 313 DIRKRKREEERLRAEAITDPLTGVTNRRLFEHRLQEFIDHSINEGTELSVLFFDIDHFKE 372

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH  GDK +  L+            + RLGG+EF      +  + A+ +   L  
Sbjct: 373 LNDKYGHQAGDKGLRHLAKICESYLRHNDILARLGGDEFVLLLPKTDPKTASAIGKRLLD 432

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
            ++++      G    +TIS G+A    +    + +I RAD ALY AK+ GRNR
Sbjct: 433 AVKSTPFEY-DGKIHRMTISIGLASNDGRLTTPARLIERADTALYEAKQRGRNR 485


>gi|220933432|ref|YP_002512331.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994742|gb|ACL71344.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
          Length = 1076

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 10/190 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
           +I   I +E   +  ++  +++ D L+GL N   F   L          + + ++++FD+
Sbjct: 636 WIYEDITRERQTA-QQLIYMAQHDALTGLYNRHRFQEHLDRMISSAQRNDSRFALLYFDL 694

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK IND FGH  GD V+   + ++  +  +     RLGG+EFA  A    + E + LA
Sbjct: 695 DEFKYINDTFGHRAGDTVLVRAAGEVSSLVRSGEVFARLGGDEFAVLAEIRHDDEPSQLA 754

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             + + I         G ++ +T S GIA    H + +  ++  AD A+Y AK +G+N  
Sbjct: 755 ERIARAISAIPFRFR-GSNLRLTASIGIAFFPEHGDNVEDLVAHADTAMYQAKSNGKNTW 813

Query: 256 VCFSDIENNT 265
             +    N++
Sbjct: 814 SLYDPSRNHS 823


>gi|186471106|ref|YP_001862424.1| diguanylate cyclase [Burkholderia phymatum STM815]
 gi|184197415|gb|ACC75378.1| diguanylate cyclase [Burkholderia phymatum STM815]
          Length = 507

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 87/197 (44%), Gaps = 10/197 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSL 122
           SL+ I   + + L  +  + L+    +   ++ L+R D L+GL N  +            
Sbjct: 305 SLMAIFALVFVGLSVMLAAQLRLRIRAEAELAVLARTDALTGLHNRRSLGDILEDEWRRA 364

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFA 181
              +   +++F DID FK  ND +GH  GD  +A ++  +      P     R GGEEF 
Sbjct: 365 SRTHTPFALLFLDIDRFKAFNDAYGHQAGDAALASVAHCIADNIRRPADKAARYGGEEFV 424

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYR 239
                +S   AA++A  +R  I    I         +T S G+A     +   +S ++  
Sbjct: 425 VLLPDTSPAGAALVAEKIRAAISELPIEHGGSEYRRLTASIGLAHWRPGDNADVSALMRA 484

Query: 240 ADQALYVAKKSGRNRVV 256
           AD ALY AK  GRN VV
Sbjct: 485 ADDALYTAKARGRNVVV 501


>gi|330955108|gb|EGH55368.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 713

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/234 (25%), Positives = 103/234 (44%), Gaps = 19/234 (8%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS-------LLLGYIS-GSILKELF 94
            F A ++        + G      +N  L    +TIS       LL  +++  + +  L 
Sbjct: 319 AFYAAMWHQLAAEGHWQGEISNRRKNGELYPSWLTISAVRNKDNLLTHFVAVFADISSLK 378

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147
            +  R+   +  D L+GL N + F + L +            +++F D+D FK IND+ G
Sbjct: 379 HAQARLDYQAHHDPLTGLPNRTLFENRLQAALLHSEESGSLGAVLFLDLDRFKHINDSLG 438

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206
           HPVGD ++  ++ +L         V RLGG+EF     G     +A  +AN L      +
Sbjct: 439 HPVGDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQASDAQAIANKLLACF--N 496

Query: 207 QINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               +    ++I+ S G          ++T++  AD A+Y +K  GRNRV  ++
Sbjct: 497 TPFEAGEHELYISPSIGSCGFPTDGTDVATLVKNADAAMYRSKAKGRNRVESYT 550


>gi|15597268|ref|NP_250762.1| hypothetical protein PA2072 [Pseudomonas aeruginosa PAO1]
 gi|9948082|gb|AAG05460.1|AE004634_3 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 864

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 10/187 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYF 139
           + + + +   ++ +I  LS  D L+GL N +     L            ++++  D+D F
Sbjct: 407 TAADITDEVEAHAKIQHLSLHDALTGLPNRNKLFQFLERLLAEKAGKSPVAVLMLDLDRF 466

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILAND 198
           K IND  GHP GD V+  ++++L         V RLGG+EF   +   S + E     + 
Sbjct: 467 KPINDQHGHPAGDAVLYAIAERLRASTRDQDMVARLGGDEFVVVSTHVSSKLEIEKFCSR 526

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L  +I         G S H+  S G+A    H      ++  AD A+Y AK +GRN    
Sbjct: 527 LIDVINREVAY--EGHSFHVGASIGVALAPEHGGDPRGLLRCADVAMYEAKAAGRNTWRF 584

Query: 258 FSDIENN 264
           + +  ++
Sbjct: 585 YLEAMDS 591


>gi|117919610|ref|YP_868802.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. ANA-3]
 gi|117611942|gb|ABK47396.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. ANA-3]
          Length = 878

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 11/207 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  +N+++  I   +  +  +++  S +     S  +++ L+  D L+ L N    +  L
Sbjct: 411 IFPQNITISTIYDELGDVRYFVAVFSDISAQKQSEAQLAHLAYFDPLTHLPNRMKLMMQL 470

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     N +L+ VF D+D FK IND+FGH +GD+++  L+ +L         + R+
Sbjct: 471 KQELRHAKRLNAQLATVFIDVDLFKHINDSFGHSIGDEMLVELAKRLRSQLQEQDVLSRI 530

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-I 233
           GG+EF A   G  S ++AA   N LR++ E     +S+G  + +T S G++         
Sbjct: 531 GGDEFVALISGIQSHEDAAAAINQLRQVFEQ-PFVVSTGDHLRLTASMGVSIYPDDGSNA 589

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSD 260
            T++  AD A+Y AK  GRN    +++
Sbjct: 590 DTLLRNADAAMYRAKSEGRNNFAFYTE 616


>gi|330808553|ref|YP_004353015.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376661|gb|AEA68011.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 858

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/193 (29%), Positives = 87/193 (45%), Gaps = 11/193 (5%)

Query: 81  LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNH----SAFISSL--GSYNEKLSIVF 133
           ++GY  + S + +   ++ ++  LS  D L+GL N          +L    ++  L+++ 
Sbjct: 406 VVGYRGTASDITDEVAAHAQVQHLSMHDALTGLPNRNKLARHLDDALVAKEHSAPLTLLM 465

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEA 192
            D+D FK IND+ GHP GD V+  ++ +L         V RLGG+EF     G     E 
Sbjct: 466 VDLDNFKPINDSLGHPAGDAVLLEVAQRLRDCTREQDLVARLGGDEFVVVLNGMEHTTEI 525

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSG 251
                 L   ++  Q  +    S+HI  S GIA  R        +I  AD ALY AK  G
Sbjct: 526 DRFCERLIDSLQ--QPILYETHSLHIGASIGIAVSRRQGYVPGELIRCADIALYQAKSEG 583

Query: 252 RNRVVCFSDIENN 264
           +     F+   N+
Sbjct: 584 KKTWCYFASQMND 596


>gi|291615262|ref|YP_003525419.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291585374|gb|ADE13032.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 814

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 89/226 (39%), Gaps = 27/226 (11%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           YI  TPF+     +   +++V                 + E   +  +I+ L+  D L+G
Sbjct: 344 YITCTPFHDHNGQIAGGIAIV---------------QDITEHKAAEEKINNLAFYDPLTG 388

Query: 112 LLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           L N    +  L            + +++F D+D FK +ND  GH +GD ++  ++ +L  
Sbjct: 389 LPNRRLLLDRLQHALASSARSGREGALLFIDLDNFKALNDTLGHDMGDLLLRQVAQRLAS 448

Query: 165 VFGTPMFVGRLGGEEFAAAAL---GSSEQEAAILANDLRKIIENSQINIS-SGPSIHITI 220
                  + RLGG+EF        G   + AA       KI+    +           T 
Sbjct: 449 CVREGDSIARLGGDEFVVMLEDLGGHDLEAAAQTEAVGEKILAMLGLPYQLVAHEYRCTP 508

Query: 221 SAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           S G       E     ++ RAD A+Y AK++GRN V  F     + 
Sbjct: 509 SIGATLFSGHELAKEELLKRADIAMYQAKQAGRNTVRFFDQQMQDA 554


>gi|307153423|ref|YP_003888807.1| Chase2 sensor-containing diguanylate cyclase [Cyanothece sp. PCC
           7822]
 gi|306983651|gb|ADN15532.1| diguanylate cyclase with Chase2 sensor [Cyanothece sp. PCC 7822]
          Length = 583

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 66/257 (25%), Positives = 114/257 (44%), Gaps = 32/257 (12%)

Query: 12  WLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LVENLS 70
           WL  E+   +F+        ++  ++ I ++I  + I +         G+ Y+  V+   
Sbjct: 347 WLFFEQKSLNFN-------VALLGNLLIVSIILPSGILV---------GISYLAFVQGWW 390

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLG 123
           + + +  I+L L  ++    K        + +++ +D L+ + N   F          L 
Sbjct: 391 IPVFTPFIALTLSALALPSYK-----NYELKRIACLDGLTQIANRRHFDQYYEQVWERLK 445

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
           +  + LS++  DIDYFK  ND +GH  GD+ +  ++  L     +  FV R GGEEF   
Sbjct: 446 AAQQPLSVILCDIDYFKFYNDQYGHQAGDRCLQQVAQTLAKAVRSTDFVARYGGEEFIIV 505

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIAERCHKEPIST--IIYRA 240
              +  + A  +   +   + + QI  S     HI T+S G+A        S+  +I  A
Sbjct: 506 LPSTDGETAYKIGQRICSQVRSLQIPHSKSRVSHIVTLSCGVATLIPDTVSSSGILIATA 565

Query: 241 DQALYVAKKSGRNRVVC 257
           D ALY AK+ GRN VV 
Sbjct: 566 DSALYEAKEKGRNGVVL 582


>gi|88800852|ref|ZP_01116407.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Reinekea sp. MED297]
 gi|88776425|gb|EAR07645.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Reinekea sp. MED297]
          Length = 857

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 12/188 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
           G  + E  +    I  L+  D L+ L N   F+  L           +  +++F D+D F
Sbjct: 403 GVDITERKLHQEHIQHLAYHDALTDLPNRHLFLDRLDQALLRTQRSKQYGALIFVDLDNF 462

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILAN 197
           K IND  GH  GD V+A ++++L   F     V RLGG+EF      LG +EQEA  +A+
Sbjct: 463 KTINDTKGHLAGDAVLADVAERLKHAFREVDTVARLGGDEFVICMTDLGRTEQEAYDIAH 522

Query: 198 D--LRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNR 254
           D  ++ +    +   + G  + ++ S G+A    H    S ++  AD A+Y AK++G+NR
Sbjct: 523 DRSVKLMDAMKRPFQTQGDQLIVSASLGLAFFHDHSLTASELLSHADMAMYRAKETGKNR 582

Query: 255 VVCFSDIE 262
           ++ F +  
Sbjct: 583 IILFQEEM 590


>gi|313111104|ref|ZP_07796933.1| putative sensory box protein [Pseudomonas aeruginosa 39016]
 gi|310883435|gb|EFQ42029.1| putative sensory box protein [Pseudomonas aeruginosa 39016]
          Length = 864

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 10/187 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYF 139
           + + + +   ++ +I  LS  D L+GL N +     L            ++++  D+D F
Sbjct: 407 TAADITDEVEAHAKIQHLSLHDALTGLPNRNKLFQFLERLLAEKAGKSPVAVLMLDLDRF 466

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILAND 198
           K IND  GHP GD V+  ++++L         V RLGG+EF   +   S + E     + 
Sbjct: 467 KPINDQHGHPAGDAVLYAIAERLRASTRDQDMVARLGGDEFVVVSTHVSSKLEIEKFCSR 526

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L  +I         G S H+  S G+A    H      ++  AD A+Y AK +GRN    
Sbjct: 527 LIDVINREIAY--EGHSFHVGASIGVALAPEHGGDPRGLLRCADVAMYEAKAAGRNTWRF 584

Query: 258 FSDIENN 264
           + +  ++
Sbjct: 585 YLEAMDS 591


>gi|212639188|ref|YP_002315708.1| PAS, GGDEF and EAL domain-containing protein [Anoxybacillus
           flavithermus WK1]
 gi|212560668|gb|ACJ33723.1| Multidomain signal transduction protein (contains PAS, GGDEF and
           EAL domains) [Anoxybacillus flavithermus WK1]
          Length = 594

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 92/181 (50%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +   +  ++++LS  D L+ + N   F   L         YN++L+I+F D+D FK
Sbjct: 148 SDVTQHKRTMEQLARLSNYDLLTNVPNRQLFTKRLQHLLDTARRYNQQLAILFLDLDRFK 207

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND  GH  GD ++  ++++L  +  T   + R+GG+EF          QEA  +A  +
Sbjct: 208 YINDELGHYSGDILLQKVANRLKKLLRTKDTLARIGGDEFVVILPKLKDIQEAVSIAEQI 267

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + ++     +     I+I+ S GI+      +    ++ RAD+A+  AK+SGRNR   +
Sbjct: 268 IESLQA--PFLLHHKDIYISASIGISVYPNDGDDGEMLLRRADRAMQKAKESGRNRFELY 325

Query: 259 S 259
           +
Sbjct: 326 T 326


>gi|39996654|ref|NP_952605.1| GGDEF domain-containing protein [Geobacter sulfurreducens PCA]
 gi|39983535|gb|AAR34928.1| GGDEF domain protein [Geobacter sulfurreducens PCA]
 gi|298505667|gb|ADI84390.1| diguanylate cyclase [Geobacter sulfurreducens KN400]
          Length = 389

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/180 (31%), Positives = 82/180 (45%), Gaps = 8/180 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDID 137
           IS S   +L     R+  ++R D L+GL NH   +  L +   +        SIV  DID
Sbjct: 204 ISDSYQSQLRELNARLELMARTDLLTGLANHWEMVMRLAAEQSRSERNGKVFSIVLADID 263

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK++ND  GH  GD+VI  ++D L           R GGEEF      +    A  +A 
Sbjct: 264 HFKKVNDTHGHQAGDRVIRGIADTLRTNIRREDICSRWGGEEFLIILPEADLPRAGAVAA 323

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            L   + N+ +    G  I +T+S G         +  +I R D ALY AK +GR+R   
Sbjct: 324 KLLAKVRNTVVPW-DGRDIRVTVSIGYGTSEPGMSVDELIRRVDDALYSAKAAGRDRFAA 382


>gi|32471539|ref|NP_864532.1| hypothetical protein RB1656 [Rhodopirellula baltica SH 1]
 gi|32443380|emb|CAD72213.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
          Length = 875

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 81/176 (46%), Gaps = 10/176 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           E+      +  L+  D L+G LN  AF   +             LS    DID+FK +ND
Sbjct: 376 EIQKKNQELEILATRDALTGCLNRRAFFERMEEMLTDYRNAGRPLSCFMVDIDHFKSVND 435

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+  +S  L  +      V R GGEEF     G    EA   +   R  + 
Sbjct: 436 TYGHHAGDEVLRKVSKVLRDLHEENQVVCRYGGEEFCVMLPGHDLDEAMEQSERTRLAVM 495

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           N  I +    S+ +T S G++E       + ++I +AD  LYVAK+ GRN+ V F 
Sbjct: 496 N--IRLEDPESLRLTASLGVSELKFGATDVQSLINQADSCLYVAKRGGRNQSVAFD 549


>gi|114319850|ref|YP_741533.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226244|gb|ABI56043.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 723

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 11/192 (5%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
            L  Y     + +   + + +   +  D L+GL N +     L          NE+++++
Sbjct: 266 FLGTYGIARDVTDRKHAESIVHYQAHHDLLTGLPNRALLKDRLAQALARARRGNEEVAVL 325

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F D+D FK +ND+ GH VGD+++  ++ +L         + RLGG+EF        ++ A
Sbjct: 326 FLDLDRFKVVNDSLGHSVGDQLLQQVAQRLRACLREGDTLARLGGDEFTLLLPAIPDRPA 385

Query: 193 -AILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
              +A      +E  Q  +     + + +S GIA    H E + T+I  AD A+Y  K+ 
Sbjct: 386 VERVAQKCIDALE--QPFMVHNHRLFLGVSIGIALFPEHGETLETLIKHADVAMYHVKEH 443

Query: 251 GRNRVVCFSDIE 262
           G+     F    
Sbjct: 444 GKGHYTFFDQAM 455


>gi|328471642|gb|EGF42519.1| hypothetical protein VP10329_00765 [Vibrio parahaemolyticus 10329]
          Length = 811

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 9/186 (4%)

Query: 81  LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDI 136
           L+ YI     +        ++ +++  D L+ L N +  IS L  +    +  + +F DI
Sbjct: 370 LINYICVFEDISVRKAHEEKLQRMAFYDPLTNLPNRTHLISLLEQHIEMEQPFATLFLDI 429

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK IND+ GH  GD++++ L+ +L  +      V R+GG+EF            + L 
Sbjct: 430 DHFKHINDSMGHFCGDQLLSKLAVRLQDILHLNAHVARIGGDEFVIVLPDIDGD--SPLL 487

Query: 197 NDLRKI--IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
             L  I  +     ++++  S+ I+ S GIA      +   T++  AD A+Y+AKK+GRN
Sbjct: 488 ETLSSILGVFRRPFDLANHDSLRISTSIGIALYPNDGQDSETLLKNADTAMYLAKKNGRN 547

Query: 254 RVVCFS 259
               +S
Sbjct: 548 GYAFYS 553


>gi|330809254|ref|YP_004353716.1| GGDEF domain-containing protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377362|gb|AEA68712.1| Hypothetical protein, GGDEF domain-containing protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 417

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 11/187 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFF 134
           +  +  +   EL  +   +  LSR D L+GL N   F             +   L+++  
Sbjct: 231 MAELVEARTAELKAANQALEALSRHDDLTGLANRRYFDELKDIEFRRAIRHKTPLAVLMC 290

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAA 193
           D+D+FK  ND +GH  GD  +  +++ L  VF  +     R+GGEEF          +A 
Sbjct: 291 DVDFFKIYNDTYGHMQGDLCLKEIAETLRSVFGRSGELTARVGGEEFVVVLPNVDAAQAC 350

Query: 194 ILANDLRKIIENSQINISSGP-SIHITISAGIAERCHK--EPISTIIYRADQALYVAKKS 250
             A   R  +   ++  S    S  +T+S G+AE   +  +    ++ RADQALY AK  
Sbjct: 351 EAAQRFRTSLAERELPHSGSKVSSFVTVSIGVAELDPETMDHFDQLLQRADQALYRAKHK 410

Query: 251 GRNRVVC 257
           GR+ V  
Sbjct: 411 GRDCVAL 417


>gi|239982468|ref|ZP_04704992.1| integral membrane phosphodiesterase [Streptomyces albus J1074]
          Length = 1006

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 16/193 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
            +   + E      ++   +  D L+ L N + F   +          +   +++F D+D
Sbjct: 476 FNSRDVTERVRLQAQLQHSAEHDPLTDLPNRALFTRRVSQALSGRRSSDRGAAVLFIDLD 535

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--- 194
            FK +ND  GH  GD+++   + +L           RLGG+EFAA  LG + ++ A    
Sbjct: 536 GFKAVNDTIGHQAGDELLVHAARRLDEAVRAGDTAARLGGDEFAALILGDTGEDRAAREG 595

Query: 195 ----LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
               LA+ LRK +  S+     G  + +  S G+A     +    ++  AD A+Y AK +
Sbjct: 596 HIQELADRLRKRL--SEPYAIDGNDVRVAASIGVAFAEPGQNAGELLRNADLAMYRAKAA 653

Query: 251 GRNRVVCFSDIEN 263
           G++RVV ++    
Sbjct: 654 GKDRVVLYAPQMQ 666


>gi|220935617|ref|YP_002514516.1| putative diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996927|gb|ACL73529.1| putative diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 651

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 14/206 (6%)

Query: 67  ENLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           +  S+ I + TI   L  +SG +L      EL     ++   +  D L+GL+N   F + 
Sbjct: 443 QEYSVKITTSTIRAGLSRVSGCVLVIHDVTELRTLARQLKFQAAHDPLTGLVNRREFETR 502

Query: 122 LGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L           +   ++F D+D+FK IND  GH  GD+V+  ++D L     +     R
Sbjct: 503 LSRAVDGSQKSGQTHVLIFLDLDWFKAINDTLGHAAGDQVLREVADMLERQVRSTDTAAR 562

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           +GG+EF    L    +    +A  LR  I      +S G +  + +S G+         +
Sbjct: 563 IGGDEFGILLLNCELEAGIAVAEKLRDAIAGYS-YVSGGETYRVGVSQGLVLIDRQSGNL 621

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
             I+  AD+A Y AK+ GRNR   +S
Sbjct: 622 GAILKAADEACYTAKEHGRNRYHVYS 647


>gi|28896866|ref|NP_796471.1| hypothetical protein VP0092 [Vibrio parahaemolyticus RIMD 2210633]
 gi|260364666|ref|ZP_05777261.1| PAS domain protein [Vibrio parahaemolyticus K5030]
 gi|260877767|ref|ZP_05890122.1| signal transduction protein [Vibrio parahaemolyticus AN-5034]
 gi|260895583|ref|ZP_05904079.1| signal transduction protein [Vibrio parahaemolyticus Peru-466]
 gi|28805074|dbj|BAC58355.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088549|gb|EFO38244.1| signal transduction protein [Vibrio parahaemolyticus Peru-466]
 gi|308090043|gb|EFO39738.1| signal transduction protein [Vibrio parahaemolyticus AN-5034]
 gi|308112621|gb|EFO50161.1| PAS domain protein [Vibrio parahaemolyticus K5030]
          Length = 811

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 9/186 (4%)

Query: 81  LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDI 136
           L+ YI     +        ++ +++  D L+ L N +  IS L  +    +  + +F DI
Sbjct: 370 LINYICVFEDISVRKAHEEKLQRMAFYDPLTNLPNRTHLISLLEQHIEMEQPFATLFLDI 429

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK IND+ GH  GD++++ L+ +L  +      V R+GG+EF            + L 
Sbjct: 430 DHFKHINDSMGHFCGDQLLSKLAVRLQDILHLNAHVARIGGDEFVIVLPDIDGD--SPLL 487

Query: 197 NDLRKI--IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
             L  I  +     ++++  S+ I+ S GIA      +   T++  AD A+Y+AKK+GRN
Sbjct: 488 ETLSSILGVFRRPFDLANHDSLRISTSIGIALYPNDGQDSETLLKNADTAMYLAKKNGRN 547

Query: 254 RVVCFS 259
               +S
Sbjct: 548 GYAFYS 553


>gi|320354763|ref|YP_004196102.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Desulfobulbus propionicus DSM 2032]
 gi|320123265|gb|ADW18811.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfobulbus propionicus DSM 2032]
          Length = 978

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 12/208 (5%)

Query: 67  ENLSLVIISITISLLLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
           + LS+ +I      +  Y +    + EL     +IS ++  D L+ L N +A    L   
Sbjct: 501 QWLSISVIRNDQQQITHYFAFFHDITELKRREKQISIMAYSDALTKLPNRAALERRLTKA 560

Query: 126 NEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
             +       L++ F D+D FK IND  GH  GD+V+  ++D+L     +   + RLGG+
Sbjct: 561 IARASRNHLNLAVFFIDLDNFKNINDTLGHDKGDQVLIEVADRLSGTIRSEDTLSRLGGD 620

Query: 179 EFAAAALGSSEQEAA-ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTI 236
           EF   +     ++A   LA+ +   ++  Q    +  +I+I  S GIA      +    +
Sbjct: 621 EFILLSESIDNEQAVYTLASRILASLK--QPIQLTPHTIYINASIGIALFPEDGQTTQEL 678

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENN 264
           I  AD A+Y AK  G+N  V F+   N 
Sbjct: 679 IKNADMAMYKAKSEGKNTFVLFTREMNE 706


>gi|296160844|ref|ZP_06843657.1| diguanylate cyclase [Burkholderia sp. Ch1-1]
 gi|295888936|gb|EFG68741.1| diguanylate cyclase [Burkholderia sp. Ch1-1]
          Length = 507

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 10/200 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-- 127
           SL+       + L  +    L+    +   +  L+R D L+GL N   +           
Sbjct: 288 SLIAALDATIIALAVLFSQQLRHRRAAEEELRVLARTDGLTGLFNRRTYEEQAEEEWRRA 347

Query: 128 -----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFA 181
                 LSI+  D+D FK  ND +GH  GD+ +  ++  +   V        R GGEEFA
Sbjct: 348 RRNAWPLSILLIDVDSFKGFNDLYGHSAGDEALIGVARCISQSVRRPGDTAARYGGEEFA 407

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYR 239
                + E  A  +A  +   +E  Q+   +     +T+S G+A    +       ++  
Sbjct: 408 VLLPDTDEAGATRIAGKICAAVEALQLRHVASSHRVLTVSIGVATTRGQAFATSRALVDA 467

Query: 240 ADQALYVAKKSGRNRVVCFS 259
           AD+ALY AK +GRN V+CFS
Sbjct: 468 ADEALYEAKDAGRNCVLCFS 487


>gi|260769458|ref|ZP_05878391.1| GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260614796|gb|EEX39982.1| GGDEF family protein [Vibrio furnissii CIP 102972]
          Length = 369

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 112/249 (44%), Gaps = 11/249 (4%)

Query: 23  SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL 82
           +P   +       S+    V F     L    +  +  +E  +   ++LV++ IT++L++
Sbjct: 111 TPVVAIALLPRKISLLFIAVQFAVFNGLILSNMQTWQPVEDNVASYINLVVVWITLALII 170

Query: 83  GYISGSIL---KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYF 139
            Y   S L   +++  +  ++ +L+  D L+G+ N       +        +   D+D F
Sbjct: 171 WYFEASRLHAYRKMNEANLKLEKLAMTDSLTGVFNRHYIERRIAHSTRPFHVAMIDVDNF 230

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND FGH  GD V+  ++D L   F     VGR GGEEF       S+++   L    
Sbjct: 231 KLVNDQFGHVAGDGVLKGIADVLKQSFANIGIVGRWGGEEFIVLLTEGSDEDIYRLTEQA 290

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC-- 257
           R  +  +   I +     ++IS G+A           + + D+ALY AK  G+NR+V   
Sbjct: 291 RAKVAATPFGIQAA----VSISIGLAHHDLG-DYEATLRKVDKALYSAKSEGKNRIVSML 345

Query: 258 -FSDIENNT 265
            + DI++ +
Sbjct: 346 QYEDIQHKS 354


>gi|153002435|ref|YP_001368116.1| PAS/PAC and GAF sensor(s)-containing diguanylate
            cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|151367053|gb|ABS10053.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella baltica OS185]
          Length = 1497

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 11/191 (5%)

Query: 85   ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
            +  S + E   +   + +L+  D L+GL N S F S L           EKL+++F D+D
Sbjct: 1044 VVFSDITERKQTEADLRRLANYDVLTGLPNRSLFSSRLLQSIQAAQQTGEKLALLFLDLD 1103

Query: 138  YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILA 196
             FK +ND++GH +GD ++   S +L     +   + R GG+EF      + S  +   +A
Sbjct: 1104 RFKHVNDSYGHSMGDALLVEASSRLQSCIASEHMLCRFGGDEFVILLRNANSIDDINHIA 1163

Query: 197  NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
              L + I  +   +  G   +I+ S GI+            I  AD A+Y AK+ GR   
Sbjct: 1164 ERLLEQI-VAPFKLY-GREFYISTSIGISIWPDDAVQPEAFIKNADLAMYHAKEEGRGNF 1221

Query: 256  VCFSDIENNTC 266
              +S   N   
Sbjct: 1222 QYYSSERNAQA 1232


>gi|104783288|ref|YP_609786.1| diguanylate cyclase [Pseudomonas entomophila L48]
 gi|95112275|emb|CAK17002.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           entomophila L48]
          Length = 496

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 93/193 (48%), Gaps = 9/193 (4%)

Query: 72  VIISITISLLLGYISGSILKELFISYN-RISQLSRIDCLSGLLNHSAFI-------SSLG 123
           + +++ I  ++  +  S+L  +   +    + L+ +D L+GL N  +F            
Sbjct: 296 LYLNLAICAMITLVVLSLLNAMIKRHQDNAAALATLDSLTGLPNRRSFDLLAGQALVEAQ 355

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
             +  L  +  D+D+FK +ND  GH  GD+V+   +  L         + R GGEEF   
Sbjct: 356 RDSAPLVALLIDLDHFKALNDTHGHLAGDEVLRQFATVLQGSLRQSDILCRWGGEEFIVL 415

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              +  + A  +A  +R+  E    + +  P + +T S G++    ++ + +++ RAD A
Sbjct: 416 LREAHGRHAIEVAEKIRRRTEQLIFSYNEQP-LRLTASIGLSSLQREDTLHSLLTRADHA 474

Query: 244 LYVAKKSGRNRVV 256
           LY AK+SGRNRV 
Sbjct: 475 LYRAKQSGRNRVC 487


>gi|330976967|gb|EGH76987.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 664

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 96/197 (48%), Gaps = 14/197 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++          ++ L +
Sbjct: 206 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 262

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQ 190
           +F D+D FKQIND+ GH  GD+V+ ++++Q          + R+GG+EF     G    +
Sbjct: 263 LFMDLDGFKQINDSLGHEAGDQVLLWVAEQFKATMRPYDVLARIGGDEFTVVIDGLDYPE 322

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           +AA +A  L + +   +     G  I +  S GIA        +  ++  AD A+Y AK+
Sbjct: 323 QAAKIAEKLIERVSGRRQ--VDGVEITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKR 380

Query: 250 SGRNRVVCFSDIENNTC 266
           +GR +   +    N   
Sbjct: 381 AGRQQYRFYDQNMNGRA 397


>gi|301384376|ref|ZP_07232794.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas syringae pv. tomato Max13]
 gi|302061908|ref|ZP_07253449.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas syringae pv. tomato K40]
 gi|302132336|ref|ZP_07258326.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 712

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 96/197 (48%), Gaps = 14/197 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++          ++ L +
Sbjct: 254 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 310

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQ 190
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF     G    +
Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           +AA +A  L + +   +    +G  I +  S GIA        +  ++  AD A+Y AK+
Sbjct: 371 QAAKIAEKLIERVSGRRQ--VNGVDITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKR 428

Query: 250 SGRNRVVCFSDIENNTC 266
           +GR +   +    N   
Sbjct: 429 AGRQQYRFYDQNMNGRA 445


>gi|291614618|ref|YP_003524775.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans lithotrophicus
            ES-1]
 gi|291584730|gb|ADE12388.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans lithotrophicus
            ES-1]
          Length = 1090

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 21/191 (10%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
             + E  ++ ++I  L+  D L+ L N   F   L           +  +I+  D+D FK 
Sbjct: 896  DITERKLAEDQIHHLAFYDALTQLPNRRLFYDRLEQSMAAGKRSGKFAAILMLDLDNFKV 955

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE------AAIL 195
            +ND  GH  GD ++A ++ +L         + R GG+EF          E      A  +
Sbjct: 956  LNDTHGHIAGDLLLAEVATRLKRCVRAMDTISRFGGDEFVILLNELDSDETESIAQARHV 1015

Query: 196  ANDLRKIIENSQINISSGPS-------IHITISAGI-AERCHKEPISTIIYRADQALYVA 247
            A  +R  +      +    S        H T S G+     H+E    ++ RAD A+Y A
Sbjct: 1016 AEKIRASLAEPYRLVVKNDSNADRLIQHHSTASIGVKVFLNHEENREQLLRRADVAMYQA 1075

Query: 248  KKSGRNRVVCF 258
            K +GRNR+  +
Sbjct: 1076 KDAGRNRIHIY 1086


>gi|239906409|ref|YP_002953150.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239796275|dbj|BAH75264.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 340

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/256 (28%), Positives = 112/256 (43%), Gaps = 19/256 (7%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITI 78
           +    PH  +++    F + +A+ +FI    L    L+P   L+ I  E  ++V+    +
Sbjct: 87  IRKTRPHNAVVWSMHGFCLLLASTLFIRAAILCAGWLSPGSALDAIGPELTAIVLFGNML 146

Query: 79  SL--------LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125
            L        LL ++       L  +   I + S+ID L+G  N S   S L  +     
Sbjct: 147 CLDALILCFPLLDFMDAQ--SRLSQATQEIIERSKIDVLTGAYNRSHMQSRLHHHVSRCS 204

Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
              E  S++ FD+D+FK IND +GH +GD+V+A +  Q+         + R GGEEF   
Sbjct: 205 SSGETFSLILFDLDHFKAINDTYGHVIGDRVLAQVGSQVKSSLRRYDELFRFGGEEFLVI 264

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAGIAERCHKE-PISTIIYRAD 241
              +    A  +A  LR+ I N   +  +      IT S GIA           ++ + D
Sbjct: 265 LPDTDANHACDIAERLRQEIANLLFDGPNISEQFRITSSFGIASTTKATRSADILLQQTD 324

Query: 242 QALYVAKKSGRNRVVC 257
            ALY AK  GRN V  
Sbjct: 325 AALYKAKAQGRNMVCV 340


>gi|188577960|ref|YP_001914889.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188522412|gb|ACD60357.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 494

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 93/198 (46%), Gaps = 14/198 (7%)

Query: 71  LVIISITISLLLG--YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE- 127
           +V+ ++  +LLLG        L+ +  +  ++S  + +D L+G+ N  AF   L    + 
Sbjct: 294 IVVAALGCALLLGVGIWLDLQLRRMHRNEAQLSTEAWVDALTGIANRRAFDDRLSRALQD 353

Query: 128 ------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEF 180
                  LS++  D+D+FK  ND +GH  GD  +  ++  +            R GGEEF
Sbjct: 354 AIRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRVIAGTIAACSRRSEDVAARYGGEEF 413

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKE---PISTI 236
                 +    A  LA+ +R  +    +   S P S H+T+S G+A     E     + I
Sbjct: 414 GMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGVATFEPGEAPLSPNAI 473

Query: 237 IYRADQALYVAKKSGRNR 254
           ++ AD ALY AK+ GRNR
Sbjct: 474 VHDADSALYRAKQKGRNR 491


>gi|163783099|ref|ZP_02178094.1| Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF)
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881779|gb|EDP75288.1| Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF)
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 218

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 11/159 (6%)

Query: 104 SRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  D L+GL N    ++               LS+   D+D FK IND +GH  GD+V+ 
Sbjct: 61  ASTDPLTGLPNRREIMNFLDFEFNRAKRNGTPLSVAVIDLDDFKFINDTYGHVAGDEVLK 120

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            L+  +     +   VGR GGEEF      +    A  +   LR+++E +       P  
Sbjct: 121 SLASLIRRNLRSTDMVGRFGGEEFVVVMPDTPLNTAVKVMERLRRVVEETYFE----PIG 176

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++IS G+A+    + +S ++ RAD  LY AK+ G+NRV
Sbjct: 177 SVSISVGVAQLREGDDVSNLLSRADGKLYQAKREGKNRV 215


>gi|24373074|ref|NP_717117.1| sensory box protein [Shewanella oneidensis MR-1]
 gi|24347254|gb|AAN54561.1|AE015596_1 sensory box protein [Shewanella oneidensis MR-1]
          Length = 998

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + +   S + I + +  D L+GL N    +  L              +++F D+DYFK
Sbjct: 556 SDITDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRNRNHFALMFLDLDYFK 615

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           ++ND  GH +GD ++   + +L         V RLGG+EF       +  +    +A  +
Sbjct: 616 EVNDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMADHKGIERVAEHI 675

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
            + I   +       + HI+ S GI       P I  ++  ADQA+Y AK  GRNR   F
Sbjct: 676 LRRIA--EPYYLGEETTHISASIGITLYPDDSPSIEGLLKHADQAMYAAKDQGRNRFNYF 733

Query: 259 SDIENNTC 266
           +       
Sbjct: 734 TPSMQEYA 741


>gi|312879201|ref|ZP_07739001.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM
           12260]
 gi|310782492|gb|EFQ22890.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM
           12260]
          Length = 300

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 7/165 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGD 152
           + +++ +D L+   N      +L  + E          ++FFDID+FK +ND +GH  GD
Sbjct: 135 LERMAYLDPLTQTGNRRYLEDTLKDWTEEFQGNGWPFGVLFFDIDHFKNVNDRYGHATGD 194

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+A ++  +         VGR GGEEF              +A  LR ++E S      
Sbjct: 195 QVLAMVARTIQGNLRNWDVVGRWGGEEFLVLCKNVDAPTLKEVAERLRLLVEASTCRGED 254

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           G  + +T+S G+     ++    ++ RAD+ LY +K+ GRNRV  
Sbjct: 255 GSDVQVTVSCGVTLAEFQDSPELLVSRADRLLYRSKQEGRNRVSF 299


>gi|92113187|ref|YP_573115.1| diguanylate cyclase with PAS/PAC and GAF sensors [Chromohalobacter
           salexigens DSM 3043]
 gi|91796277|gb|ABE58416.1| diguanylate cyclase with PAS/PAC and GAF sensors [Chromohalobacter
           salexigens DSM 3043]
          Length = 570

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/195 (30%), Positives = 99/195 (50%), Gaps = 14/195 (7%)

Query: 77  TISLLLGYISGSI-----LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------- 124
            + L++G +   +     L ++    + ++ L+R D L+GL N +     +         
Sbjct: 374 LVRLIVGAVEKVVTQFEYLSQVKKERDEMAALARKDQLTGLPNRAYLNEYVDMLVKSPDV 433

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV--FGTPMFVGRLGGEEFAA 182
            +  + +   DID+FK IND +GH +GD+VI +LS+++  V       F  R+GGEEF  
Sbjct: 434 QHAGICLAVIDIDHFKTINDTYGHDIGDQVIIWLSERVTEVLRARAGDFAARVGGEEFVV 493

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
               SS + A  +   +R  IE++ I I     +HITIS+G+ +    +    +  RAD+
Sbjct: 494 MINNSSLEVARSVMERVRSKIESTPIPIEEASPLHITISSGVTQWQPTDTYPHVFKRADE 553

Query: 243 ALYVAKKSGRNRVVC 257
           ALY AK  GRN+V  
Sbjct: 554 ALYEAKHGGRNQVCV 568


>gi|297623008|ref|YP_003704442.1| diguanylate cyclase/phosphodiesterase [Truepera radiovictrix DSM
           17093]
 gi|297164188|gb|ADI13899.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Truepera radiovictrix DSM 17093]
          Length = 761

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 9/188 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDY 138
           +    +  EL      + +L+  D L+GL N +     L     +     L+++F D+D 
Sbjct: 308 WQRFRLEAELRKERAALERLAFFDPLTGLPNRALLHDRLQHALAQRGAGALTVMFLDLDD 367

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAN 197
           FK +ND  GH  GD ++  +S +L         V R GG+EF     G  +EQ A+ +A 
Sbjct: 368 FKDVNDTLGHDTGDALLREVSRRLEACLRAGDTVARWGGDEFVLLLPGVGTEQAASRVAR 427

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
            +   +   +        + +  S G+A           ++  AD ALY AK+ G++   
Sbjct: 428 KILTCLA--EPFALGEVDVRVAASLGVALYPGLAASSEDLLKHADIALYRAKEGGKHTYA 485

Query: 257 CFSDIENN 264
            F++  N 
Sbjct: 486 FFTEDMNR 493


>gi|225850486|ref|YP_002730720.1| signal transduction response regulator [Persephonella marina EX-H1]
 gi|225646402|gb|ACO04588.1| signal transduction response regulator [Persephonella marina EX-H1]
          Length = 331

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 9/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + +L    +     + +D L+GL+N   F  +L          N   S+++ D+D FK
Sbjct: 151 SEIHQLRQELSHAKTEASMDFLTGLVNRRRFERALEDAIKDFEKRNYPFSLIYVDVDNFK 210

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            INDN+GH VGD V+  ++            +GR+GGEEFA    G   ++A  +A  LR
Sbjct: 211 DINDNYGHSVGDIVLKEIATIFKFYLRANTIIGRIGGEEFAILLPGVEIEDAVKIAERLR 270

Query: 201 KIIENSQINISSGPS--IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            II+N +I I       + +T S G+ +    + +++I++RAD A+Y AKK+G+N+V  
Sbjct: 271 NIIQNREIRIGPDRDEILRVTASFGVTQVKKGDTVNSILHRADTAMYRAKKTGKNKVEV 329


>gi|254383220|ref|ZP_04998573.1| membrane associated phophodiesterase [Streptomyces sp. Mg1]
 gi|194342118|gb|EDX23084.1| membrane associated phophodiesterase [Streptomyces sp. Mg1]
          Length = 1007

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 84/193 (43%), Gaps = 16/193 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           ++   + E      ++   +  D L+ L N + F   +          +   +++F D+D
Sbjct: 488 LNSRDVTERVRLQAQLQHSAEHDPLTDLPNRALFTRRVRQALTGRRAGDHSTAVLFIDLD 547

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-------EQ 190
            FK +ND  GH  GD+++   + +L           RLGG+EFAA  LG         E 
Sbjct: 548 GFKAVNDTIGHQAGDELLVEAARRLQDSVRAGDTAARLGGDEFAALILGDGSRDRSAREY 607

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +   +A+ LR  +  SQ    +G  + +  S G+A        S ++  AD A+Y AK  
Sbjct: 608 QVHEIADRLRTTL--SQPYRIAGSEVRVAASIGVAFADPGITPSDLMRNADLAMYRAKAG 665

Query: 251 GRNRVVCFSDIEN 263
           G++RV  ++    
Sbjct: 666 GKDRVELYAPQMQ 678


>gi|146308662|ref|YP_001189127.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
 gi|145576863|gb|ABP86395.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
          Length = 715

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 108/224 (48%), Gaps = 18/224 (8%)

Query: 59  YGLEYILVENLS--LVIISITISLLLGYISGSILKELFIS-----YNRISQLSRIDCLSG 111
           Y +   ++  LS   + ++++ S L       ++  L +S     + ++   +  D L+G
Sbjct: 227 YRVHEAMLRTLSGGCLPVALSCSPLPRMQQAMVVIALDMSVVRNLHAQLESQAVTDSLTG 286

Query: 112 LLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           LLN   F       ++ +    +++++++ D+D FK+IND+ GH VGD+++  + +QL  
Sbjct: 287 LLNRRGFHLALESALARIERSGQRIAVLYLDLDGFKRINDSLGHDVGDQLLRRVGEQLKA 346

Query: 165 VFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                  + R+GG+EF A        ++AA +A  L +++  S  +   G    +  S G
Sbjct: 347 CLRPYDSLARIGGDEFTALLDNLGHPEDAAKVAEKLIELV--SVRHTLDGVDFALGASVG 404

Query: 224 IAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           IA      + +  ++  AD A+Y AK++GR +   FS   N   
Sbjct: 405 IACFPECGQSVEGLLRSADMAMYEAKRAGRQQYRFFSPEMNGRA 448


>gi|304412454|ref|ZP_07394060.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS183]
 gi|307307113|ref|ZP_07586851.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica BA175]
 gi|304349096|gb|EFM13508.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS183]
 gi|306910352|gb|EFN40783.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica BA175]
          Length = 1490

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 11/191 (5%)

Query: 85   ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
            +  S + E   +   + +L+  D L+GL N S F S L           EKL+++F D+D
Sbjct: 1037 VVFSDITERKRTEADLRRLANYDVLTGLPNRSLFSSRLLQSIQAAQQTGEKLALLFLDLD 1096

Query: 138  YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILA 196
             FK +ND++GH +GD ++   S +L     +   + R GG+EF      + S  E   +A
Sbjct: 1097 RFKHVNDSYGHSMGDALLVEASSRLQSCIASEHMLCRFGGDEFVILLRNANSIDEINHIA 1156

Query: 197  NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
              L + I  +   +  G   +I+ S GI+            I  AD A+Y AK+ GR   
Sbjct: 1157 ERLLEQI-VAPFKLY-GREFYISTSIGISIWPDDAVQPEAFIKNADLAMYHAKEEGRGNF 1214

Query: 256  VCFSDIENNTC 266
              +S   N   
Sbjct: 1215 QYYSSERNAQA 1225


>gi|88704969|ref|ZP_01102681.1| sensory box/GGDEF family protein [Congregibacter litoralis KT71]
 gi|88700664|gb|EAQ97771.1| sensory box/GGDEF family protein [Congregibacter litoralis KT71]
          Length = 943

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 12/198 (6%)

Query: 79  SLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSY---NEKLS 130
           S + GY+ S S +  +  + +R+  L+R D L+GL N +       S L      N   +
Sbjct: 477 SRVTGYVASFSDITTIKQNEHRLELLARQDPLTGLPNRTHLRHTLDSRLARAAPGNRSTT 536

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE- 189
           I+F D+D FK +ND+ GH  GD+++   S +L+        + R+GG+EF A        
Sbjct: 537 ILFIDLDQFKDVNDSLGHSAGDELLKVCSSRLLDSLRDDDILARVGGDEFVALLFDVPGY 596

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAK 248
           +  + +A+ L  ++E  +     G ++ ++ S GI           T++  AD A+Y AK
Sbjct: 597 ENVSTIASKLIAVLE--EPIAIGGETVRVSASIGICRYPEDGADTETLLRNADTAMYAAK 654

Query: 249 KSGRNRVVCFSDIENNTC 266
           K+GR    C+S    +  
Sbjct: 655 KAGRGTWECYSQAMTDVA 672


>gi|171319753|ref|ZP_02908840.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
 gi|171094989|gb|EDT40014.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
          Length = 508

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 102/234 (43%), Gaps = 22/234 (9%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI------LK 91
           ++A  IF    FL        YG+   L    S   I      L+  +S S+      L+
Sbjct: 282 WLAHAIFAGGFFLLS------YGVVQALQTTRSFSAIYRQ-EDLMSRLSESMARTDSALQ 334

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL  +  ++  ++  D ++G  N   FI  +               ++  D+D FK IND
Sbjct: 335 ELRRTNQKLEYMAATDPMTGASNRRQFIGQVEREIVRAERDGTPFCLLALDLDNFKNIND 394

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH +GD+V+  +  Q +        + R+GGEEF A       + A + A  +R  I 
Sbjct: 395 AYGHQIGDEVLRGVVRQCLEAIRPAGALARVGGEEFMALLPEMPLEGARMTAERVRSSIA 454

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S   +     + +T+S G+A+       +  ++   D+ LY AK+ GRNRVV 
Sbjct: 455 SSPFGL-DFKRVQVTVSVGVAQYGVDGSTVDALLRAVDERLYQAKRDGRNRVVA 507


>gi|117921369|ref|YP_870561.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. ANA-3]
 gi|117613701|gb|ABK49155.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. ANA-3]
          Length = 1009

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +   S + I + +  D L+GL N    +  LG             +++F D+DYFK
Sbjct: 565 SDITDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLGAEIKSADRNRNHFALMFLDLDYFK 624

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           ++ND  GH +GD ++   + +L         V RLGG+EF          +    +A  +
Sbjct: 625 EVNDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMVDHKGIERVAEHI 684

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            + I   +  +    + +I+ S GI         I  ++  ADQA+Y AK  GRNR   F
Sbjct: 685 LRRIA--EPYVLGEETAYISASIGITLYPDDATSIEGLLKHADQAMYAAKDQGRNRFNYF 742

Query: 259 SDIENNTC 266
           +       
Sbjct: 743 TPSMQEYA 750


>gi|326424308|ref|NP_762803.2| GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|319999695|gb|AAO07793.2| GGDEF family protein [Vibrio vulnificus CMCP6]
          Length = 685

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 12/183 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           S +  L    +++ +++  D L+ L N       +    E+       L+++F D+D FK
Sbjct: 496 SDISALKEHEHQLEKIAHYDPLTELPNRLLLKERMAQAMERSKRNNYYLAVLFLDLDGFK 555

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
           ++ND FGH  GD V+  ++ ++  +      + RLGG+EF           +   LA   
Sbjct: 556 EVNDTFGHDAGDDVLYHVAARMKDLVREGDTLARLGGDEFIILVPRVRDSYDIEPLAQRF 615

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
              I  SQ        I ++ S G++     E     ++I +ADQA+Y AK +G+N  + 
Sbjct: 616 LHSI--SQPIAIGKEEITLSASIGVSIYFGGEQQDSDSLIRQADQAMYQAKLAGKNCYMF 673

Query: 258 FSD 260
           +SD
Sbjct: 674 YSD 676


>gi|123443561|ref|YP_001007534.1| hypothetical protein YE3362 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090522|emb|CAL13391.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 414

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/186 (31%), Positives = 88/186 (47%), Gaps = 15/186 (8%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLS 130
           I L+L  I    + E       +   +  D L+ L N   F        +    Y +  S
Sbjct: 233 IRLMLCIIH--DITEQKRLEQALEYAALKDPLTDLGNRRQFFPLVEHAHAQSQRYGQNFS 290

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D+FK IND  GH  GD+V+ FL+  L  +      V R GGEEF      ++ +
Sbjct: 291 LILLDVDHFKNINDQLGHHKGDEVLIFLARTLESIIRECDIVFRWGGEEFTILLPSTNLK 350

Query: 191 EAAILANDLRKIIENS-QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            A  LA  +R+ I+   Q N+       +T+S G+A+    E   ++  R D+ALY AK 
Sbjct: 351 GALQLAESIRETIQMICQPNLP-----QLTVSIGVAQHQVGEDTDSLFKRMDEALYRAKA 405

Query: 250 SGRNRV 255
           SGRNRV
Sbjct: 406 SGRNRV 411


>gi|117618131|ref|YP_856095.1| MorA [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117559538|gb|ABK36486.1| MorA [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 838

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 16/193 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDID 137
           I    + E   +  RI  L+  D L+GL N      +L     +        +++F D+D
Sbjct: 371 ICFEDISERKEAERRIQDLAYYDELTGLPNRRQLHETLAHAFGEASRDYLIGALLFIDLD 430

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS------EQE 191
           +FK IND+ GH  GD ++  ++ +L  +      + RLGG+EF       S      E +
Sbjct: 431 HFKTINDSLGHATGDWLLKEVASRLKRLVRQGDCLARLGGDEFVLLLPSLSASPPQAEMQ 490

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKS 250
           A ++A  L   I        +G  +HI  S GI     +E  +  ++ +AD A+Y AK +
Sbjct: 491 ADLIAERLISEIAA--PYNHAGQVLHIGASVGITLFPGREQGVDDLLKQADTAMYQAKSA 548

Query: 251 GRNRVVCFSDIEN 263
           GR     F     
Sbjct: 549 GRKTRRFFDASMQ 561


>gi|87118234|ref|ZP_01074133.1| PAS:GGDEF protein [Marinomonas sp. MED121]
 gi|86165868|gb|EAQ67134.1| PAS:GGDEF protein [Marinomonas sp. MED121]
          Length = 299

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 87/177 (49%), Gaps = 9/177 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
              + E   + N++ +LSR D L+GL+N   F              N   S++  DIDYF
Sbjct: 120 QRDVTEYIYTQNKLEELSRTDPLTGLINRRVFDEMAEKEFYRYQNQNIHYSLLALDIDYF 179

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND +GH  GD V+A  S        +   + R+GGEEF      + +  A  +A  L
Sbjct: 180 KRINDKYGHLTGDYVLASFSTLCEKNIRSQDKIARIGGEEFCIILPATDKVGAIEVAEKL 239

Query: 200 RKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           R+ I N++        I +T+S G+++ +        ++ RAD+ LY AK  GRN+V
Sbjct: 240 RRAISNARFK-QDEHEIAVTVSIGVSQVKMSDYDYVAMLKRADENLYRAKHQGRNQV 295


>gi|238752626|ref|ZP_04614098.1| Predicted diguanylate cyclase [Yersinia rohdei ATCC 43380]
 gi|238709140|gb|EEQ01386.1| Predicted diguanylate cyclase [Yersinia rohdei ATCC 43380]
          Length = 361

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 73/276 (26%), Positives = 124/276 (44%), Gaps = 22/276 (7%)

Query: 11  IWLCHE-KNLESF-SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYIL--V 66
           +W  H     ES  +     +  S+F   FI+T+    N   F +   P       L   
Sbjct: 82  LWAWHIILKFESLGTNENNYLLLSLFTIFFISTIALSDNFLAFCLHTIPPALTVIFLDDF 141

Query: 67  ENLSLVIISITISLLLGYISGSILKE-----------LFISYNRISQLSRIDCLSGLLNH 115
           +N+  ++ +I + L+   +   +L+            L+    + S LS ID L+GL N 
Sbjct: 142 QNIFRIVFTIMLPLIGFSLHHLMLRRSDKFTRKLVAHLYNEREKFSDLSMIDPLTGLYNR 201

Query: 116 SAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
             F + L +   +      ++  DID+FK  NDN+GH +GD+ +  ++  +     +   
Sbjct: 202 RGFENKLETLLAQSPGNHYVLLLDIDHFKAYNDNYGHTMGDQALVRVAVAIRDAVRSRDI 261

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAERCH 229
           V R GGEEF       SE+ A  LA  +R+ + +  I       +   +T+SAG++    
Sbjct: 262 VVRYGGEEFLVLLTHVSEEYATQLAERVRQRVLSLDIPHVFNHKVSTSVTLSAGVSPLQS 321

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            +  S++   AD+ALY AKK GRN+V    + + N 
Sbjct: 322 YDLTSSL-KAADEALYRAKKDGRNKVAFAEEKQPNA 356


>gi|237808597|ref|YP_002893037.1| diguanylate cyclase [Tolumonas auensis DSM 9187]
 gi|237500858|gb|ACQ93451.1| diguanylate cyclase [Tolumonas auensis DSM 9187]
          Length = 392

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 111/242 (45%), Gaps = 16/242 (6%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYI--GLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           Y S      +  ++  A   L ++     P Y L    + NL L++ ++ I LL    S 
Sbjct: 150 YESGRLMFALTCILATAGSLLRFLTYQYEPSYSLLNTNISNL-LLVFNVIIVLLGLSFSI 208

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYF 139
            ++   ++   +++  +  D L+G+ N         +             S+   DIDYF
Sbjct: 209 MLITSQWL-QQKLAAFASYDALTGIYNRYGLNEQSAALFNSDGKLSATDYSVAMIDIDYF 267

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+ ND++GHPVGD V+  ++++L         + R GGEEF     G++  +A   A  +
Sbjct: 268 KKTNDDYGHPVGDAVLKEVAERLRQNIRHHDILARYGGEEFIVVLPGTNITDALHWAERV 327

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVV 256
           R  +    I +    +I IT+S G+     K+        I +AD ALY AK++GRN+V 
Sbjct: 328 RAQVAAKPIQV-DQHAIQITLSIGVVALPGKDKHSAFDEAIRQADIALYQAKENGRNQVR 386

Query: 257 CF 258
           CF
Sbjct: 387 CF 388


>gi|27382691|ref|NP_774220.1| hypothetical protein bll7580 [Bradyrhizobium japonicum USDA 110]
 gi|27355863|dbj|BAC52845.1| bll7580 [Bradyrhizobium japonicum USDA 110]
          Length = 1390

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 11/177 (6%)

Query: 92   ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
            E   +  RI  L+  D L+ L N   F       I +   ++ + +++F D+D FK IND
Sbjct: 924  EKNQADERIEYLASHDSLTDLPNRETFNGLLREAIDAAQRHDHRFAVLFIDLDRFKVIND 983

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKII 203
            + GH  GD ++  ++++L     T   V RLGG+EF        E  +   +A  L   +
Sbjct: 984  SLGHEAGDLLLLEVANRLRGALRTSDVVARLGGDEFVVILDQCGEIDDVQRIATGLLAAL 1043

Query: 204  ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               +    +G   H T S GIA    +     T+   AD A+Y+AK+ G+N    FS
Sbjct: 1044 A--EPMELAGHECHTTASIGIAMYPANGSDAQTLTKNADMAMYLAKEDGKNGYRFFS 1098


>gi|331014538|gb|EGH94594.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 712

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 96/197 (48%), Gaps = 14/197 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++          ++ L +
Sbjct: 254 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 310

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQ 190
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF     G    +
Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           +AA +A  L + +   +    +G  I +  S GIA        +  ++  AD A+Y AK+
Sbjct: 371 QAAKIAEKLIERVSGRRQ--VNGVDITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKR 428

Query: 250 SGRNRVVCFSDIENNTC 266
           +GR +   +    N   
Sbjct: 429 AGRQQYRFYDQNMNGRA 445


>gi|116050020|ref|YP_791166.1| putative sensory box protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115585241|gb|ABJ11256.1| putative sensory box protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 864

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 10/187 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYF 139
           + + + +   ++ +I  LS  D L+GL N +     L            ++++  D+D F
Sbjct: 407 TAADITDEVEAHAKIQHLSLHDALTGLPNRNKLFQFLERLLAEKAGKSPVAVLMLDLDRF 466

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILAND 198
           K IND  GHP GD V+  ++++L         V RLGG+EF   +   S + E     + 
Sbjct: 467 KPINDQHGHPAGDAVLYAIAERLRASTRDQDMVARLGGDEFVVVSTHVSSKLETEKFCSR 526

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L  +I         G S H+  S G+A    H      ++  AD A+Y AK +GRN    
Sbjct: 527 LIDVINREIAY--EGHSFHVGASIGVALAPEHGGDPRGLLRCADVAMYEAKAAGRNTWRF 584

Query: 258 FSDIENN 264
           + +  ++
Sbjct: 585 YLEAMDS 591


>gi|39934887|ref|NP_947163.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009]
 gi|39648737|emb|CAE27259.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris
           CGA009]
          Length = 429

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 95/173 (54%), Gaps = 8/173 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           +L  +Y RI +L+ +D L+G  N           I     + E LS+   D+D+FK+IND
Sbjct: 257 QLREAYQRIEELAELDELTGAYNRRCIMRHLDNEIERAARHCESLSLALIDLDWFKRIND 316

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGHP+GD+V+   +  +     +    GR GGEEF      +S+ EA ++ + LR I+ 
Sbjct: 317 TFGHPIGDEVLRTFAITIFANIRSFDRFGRYGGEEFLLLLPNTSDDEARLILDRLRMIVA 376

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +  S PS+ +T+SAG+     +E    ++ RAD+ALY AK  GRNR+ C
Sbjct: 377 DLDWSAFS-PSMMVTLSAGVTTMTLQESTEAVLARADRALYEAKHGGRNRISC 428


>gi|261409979|ref|YP_003246220.1| PAS/PAC sensor-containing diguanylate cyclase [Paenibacillus sp.
           Y412MC10]
 gi|261286442|gb|ACX68413.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus sp.
           Y412MC10]
          Length = 331

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 12/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG----SYNE---KLSIVFFDIDYFKQIN 143
            EL      + +LS  D L+GL N   F   L      YN     LS+   DID+FK++N
Sbjct: 152 TELMEINAVLLELSNTDKLTGLKNRRFFQERLEEQLMQYNHNRIPLSLFIIDIDHFKRVN 211

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD+V+  ++  L         V R GGEEF      +  ++A   A  LR+ +
Sbjct: 212 DTWGHGYGDEVLFDVATILKTHALEGETVARYGGEEFVMILPETDAEKAKAGAERLRRAV 271

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           ++      S  +  +TIS GI      +  +T++ +AD+ALY +K++GRN+V  + D+
Sbjct: 272 QDF-----SWKTGSMTISIGIITANPDDNEATLLQKADEALYASKQNGRNQVTHYDDL 324


>gi|218887388|ref|YP_002436709.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758342|gb|ACL09241.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 936

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/210 (27%), Positives = 103/210 (49%), Gaps = 12/210 (5%)

Query: 63  YILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           + + + LSLV I     ++L  +   S + ++     +I+  +  D L+GL N       
Sbjct: 460 WQIPQWLSLVSIRDETGVILNCVGVFSDITDIKQKEAQITHQANHDDLTGLPNRKHIFEL 519

Query: 122 LGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L           +KL++VF D+D FK IND++ H  GD+++  ++ +L         +GR
Sbjct: 520 LHDAIARASVRGQKLAVVFIDMDGFKFINDSYDHATGDQLLCDVARRLRAALRPGDMLGR 579

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHK-EP 232
           LGG+EF AA  G S++    L   +R++ E  ++     G    +T S G++      + 
Sbjct: 580 LGGDEFVAAVGGISDKG--HLDGIMRRLFETFAEPFEYGGMGFSVTASFGVSVYPDDGDS 637

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            + ++ RAD A+Y AK  G+N +  F + +
Sbjct: 638 ANALLSRADIAMYRAKDMGKNAIAVFCEEQ 667


>gi|89098814|ref|ZP_01171695.1| hypothetical protein B14911_05124 [Bacillus sp. NRRL B-14911]
 gi|89086490|gb|EAR65610.1| hypothetical protein B14911_05124 [Bacillus sp. NRRL B-14911]
          Length = 532

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 8/213 (3%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           Y G+  F       ++  S  I   +  L    +  S + +  +   ++ +L+  D L+G
Sbjct: 313 YSGIHKFENEAETYIQIHSFPIKKSSGELAGTTVILSNITQEVLLRQKLEELAFKDGLTG 372

Query: 112 LLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           + N + FI           +    +S++ FDIDYFK IND +GH  GD+ +  ++     
Sbjct: 373 IYNRTYFIEQSGRLLKEAEAAGGTMSVILFDIDYFKNINDQYGHLQGDEALRHIARVSGS 432

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           + G      R GGEEF     G+  + AA  A  +R  IE   +   +G  I +T S G 
Sbjct: 433 LLGGGSIFARYGGEEFVICLPGADLESAADQAEKIRAGIEEVFLPSETGM-ISLTASFGA 491

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           AE      +  +++ AD ALY +K  GRNRV C
Sbjct: 492 AEAAPGMTLERLLHNADTALYQSKNGGRNRVTC 524


>gi|119776430|ref|YP_929170.1| sensory box protein [Shewanella amazonensis SB2B]
 gi|119768930|gb|ABM01501.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella amazonensis SB2B]
          Length = 1494

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 86/181 (47%), Gaps = 11/181 (6%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            + + +   +   +  L+  D L+ L N + F   L             ++++F D+D FK
Sbjct: 1050 TDITDRKKAEEDLRLLASYDPLTNLPNRTLFQDRLDHALAQAHRTGNMVALLFLDLDRFK 1109

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDL 199
             IND+ GH +GD ++  ++ +L         V RLGG+EF     G ++ +AA ++A  L
Sbjct: 1110 HINDSMGHHIGDLLLKAVAHRLQNCVREGDTVARLGGDEFTIILEGVAKTKAATVIAEKL 1169

Query: 200  RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +  +     I    +++I+ S GI+         ++++  AD A+Y AK  GRN    +
Sbjct: 1170 IRAFQT--PFILEDQALNISPSIGISLYPMDASDSTSLVKYADTAMYHAKSLGRNNFQFY 1227

Query: 259  S 259
            +
Sbjct: 1228 T 1228


>gi|221065573|ref|ZP_03541678.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Comamonas testosteroni KF-1]
 gi|220710596|gb|EED65964.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Comamonas testosteroni KF-1]
          Length = 935

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 108/226 (47%), Gaps = 20/226 (8%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISG--------SILKELFISYNRISQLSRIDCL 109
           ++G  +   +N S     +TIS +              S +  L  +  ++ +++  D L
Sbjct: 333 WHGELWCRRKNGSQFAALLTISAVPDMRGNIEHYAAMFSDITALKENQQQLERVAHYDLL 392

Query: 110 SGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GL N       L             L++VF D+D FK++ND  GH VGDK+++ LS ++
Sbjct: 393 TGLPNRLLLGDRLKQAIRQTRRRGMHLAVVFIDLDGFKKVNDQHGHAVGDKLLSVLSRRM 452

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITIS 221
             V      + RLGG+EF A  +     + ++    L ++IE +   +  G ++  ++ S
Sbjct: 453 TQVLREDDTLARLGGDEFVAILV--DLPDISVSVPILDRLIEVAVQPVPIGDALCEVSAS 510

Query: 222 AGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            G++     E I    ++ +ADQA+Y AK++G+NR   F   ++ T
Sbjct: 511 IGVSYYPQGEDIDADQLLRQADQAMYRAKQAGKNRYHVFDTEKDRT 556


>gi|209524005|ref|ZP_03272557.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Arthrospira maxima CS-328]
 gi|209495677|gb|EDZ95980.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Arthrospira maxima CS-328]
          Length = 1092

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 16/198 (8%)

Query: 83  GYISGSI-----LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           GYI+  I     + +   +   ++  +  D L+ L N +     L         ++  ++
Sbjct: 640 GYITHFIAVKEDITQQKHNEEILAHQANYDALTDLPNRTLIFDRLRQAITEAQVHHSNVA 699

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSE 189
           ++F D+D+FK IND  GH +GD ++     +L         VGRLGG+EF          
Sbjct: 700 VMFIDLDHFKNINDTLGHELGDFLLKEAGMRLRGCIRKTDTVGRLGGDEFLLIIPKLDDL 759

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAK 248
            +A  +AN +  ++   +     G    I+ S GIA      + +ST++  AD A+Y AK
Sbjct: 760 VQAEYIANQVLDVL--GEPFNLCGEEAFISASIGIASYPQDGKNVSTLVRNADTAMYAAK 817

Query: 249 KSGRNRVVCFSDIENNTC 266
           + GRN    F+   N+  
Sbjct: 818 QEGRNVFAFFTQNMNDEA 835


>gi|91792747|ref|YP_562398.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91714749|gb|ABE54675.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella denitrificans OS217]
          Length = 888

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 106/223 (47%), Gaps = 17/223 (7%)

Query: 58  FYGLEYILVENLSLVIISITISLL------LGYISG--SILKELFISYNRISQLSRIDCL 109
           + G  +   +N  +    ITIS +      + Y     + + E   +  ++ +LS  D L
Sbjct: 403 WQGEIWNRRKNGEVYPQEITISAVYDDNDTIAYFVAVFTDVSEQRNTQAKLDKLSLHDPL 462

Query: 110 SGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           + L N + F+S +            +L++VF D+D+FK IND+ GH  GD ++  L+++L
Sbjct: 463 TQLPNRAQFMSRIDNAIYYAKQEGTQLAVVFIDVDFFKHINDSLGHVAGDTILVELANRL 522

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             +      + RLGG+EF+     +S      + N +  + E +  + S+G SI +T S 
Sbjct: 523 SSILHPGAVLSRLGGDEFSLLTNMASTDNLIAIVNRIFSVFE-APFSCSNGQSIRLTASM 581

Query: 223 GIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           G+A      +    ++  AD A++ AK+ GRN    +++    
Sbjct: 582 GLALYPSDGKDNDGLLRNADAAMHRAKQDGRNNYAFYTEAMTQ 624


>gi|146292356|ref|YP_001182780.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella putrefaciens CN-32]
 gi|145564046|gb|ABP74981.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella putrefaciens CN-32]
          Length = 1018

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +   + + I + +  D L+GL N    +  LG          +  +++F D+DYFK
Sbjct: 565 SDITDKKQNEHLIWKQANYDTLTGLPNRRMLLEYLGAEIKNADRNQDHFALLFLDLDYFK 624

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDL 199
           ++ND  GH +GD ++   + +L         V RLGG+EF       +  +    +A  +
Sbjct: 625 EVNDTLGHEMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSTMADHKGIERVAEHI 684

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            + I   +  +    + +IT S GI         I  ++  ADQA+Y AK  GRNR   F
Sbjct: 685 LRRIA--EPYLLGEETAYITASIGITLYPDDATSIEGLLKHADQAMYAAKDQGRNRFNYF 742

Query: 259 SDIENNTC 266
           +       
Sbjct: 743 TPSMQEYA 750


>gi|157376803|ref|YP_001475403.1| putative signaling protein [Shewanella sediminis HAW-EB3]
 gi|157319177|gb|ABV38275.1| conserved hypothetical signaling protein [Shewanella sediminis
           HAW-EB3]
          Length = 480

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 69/267 (25%), Positives = 118/267 (44%), Gaps = 26/267 (9%)

Query: 15  HEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPF----YGLEYILVENLS 70
            +K  E++ P   +    + + +  A +  +   F+F   L+P       ++ +   N  
Sbjct: 213 RQKTTEAYLPVRQLTESMLMYLVLSAILGVLIITFVFITMLSPLKKAALSVKDMAQGNTP 272

Query: 71  LVIISIT-----------ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           L  ++I             + L+  I G     L  +  +++ LS  D L+GL N   F 
Sbjct: 273 LKKLTIVHKDEVGDLIDGFNSLVDAIDGRT-DALETANQKLAALSLTDELTGLGNRRHFN 331

Query: 120 SSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMF 171
             L           + L++   DID+FK+ ND +GH +GD+ +  +S  L  +       
Sbjct: 332 EKLEQEWIRASRTKQPLALGMIDIDFFKKYNDKYGHVLGDECLQEISKLLASIISRAGDL 391

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
             R GGEEFA  A  + E+ A  +A   ++ + +  +         +T S GIA R   +
Sbjct: 392 SARYGGEEFAFIAPATDEEGARDIAEKFQEALHSLTLPHVESEFGFVTASIGIAVRTPTK 451

Query: 232 PIST--IIYRADQALYVAKKSGRNRVV 256
              +  +I  AD+ALY+AK+ GRNRVV
Sbjct: 452 GEESICLIKIADEALYLAKEQGRNRVV 478


>gi|161519737|ref|YP_001583164.1| diguanylate cyclase [Burkholderia multivorans ATCC 17616]
 gi|160343787|gb|ABX16872.1| diguanylate cyclase [Burkholderia multivorans ATCC 17616]
          Length = 529

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 15/210 (7%)

Query: 63  YILVENLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSA 117
           Y    + ++ I S    L LG++  S+L     ++   +   +  L+R D L+GL N   
Sbjct: 305 YAAWYDRAIPIGSAMALLALGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRM 364

Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
              +L     +       LS++F D+D+FK+ ND+ GH  GD  +A +   +      P 
Sbjct: 365 LDVTLAREWRRAARSQHALSLLFVDVDHFKRYNDSQGHQAGDDALAAVGRCIAGCLRRPA 424

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--R 227
            +  R GGEEF           A  +A  +R  I    I         +T S G+A    
Sbjct: 425 DYAARYGGEEFVVILPDIGSDGAVAIAETIRTSILELGIRHDGSAFGCLTASIGVATCRP 484

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              + +   +  AD ALY AK++GRNRVV 
Sbjct: 485 DRDDDMHAALKLADDALYRAKETGRNRVVV 514


>gi|254252174|ref|ZP_04945492.1| hypothetical protein BDAG_01390 [Burkholderia dolosa AUO158]
 gi|124894783|gb|EAY68663.1| hypothetical protein BDAG_01390 [Burkholderia dolosa AUO158]
          Length = 494

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 101/233 (43%), Gaps = 20/233 (8%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI-----SGSILKE 92
           ++A  IF    FL        YG+   L    S   I     L+         + S L+E
Sbjct: 268 WLAHAIFAGGFFLLS------YGVVQALQTTRSFSAIYSQQDLMSRLAESMARTESALQE 321

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L  +  ++  ++  D ++G  N   FI+ +               ++  D+D FK IND 
Sbjct: 322 LRRTNQKLEYMAATDPMTGASNRRQFIAQVEREIVRAERDGTPFCLLALDLDNFKHINDA 381

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH +GD+V+  +  Q +        + R+GGEEF A       + A + A  +R  I +
Sbjct: 382 YGHQIGDEVLRGVVRQCLEAIRPAGGLARVGGEEFMALLPEMPLEGARMTAERVRSSIAS 441

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +     + +T+S G+A+       +  ++   D+ LY AK+ GRNRVV 
Sbjct: 442 APFGL-DFKRVQVTVSVGVAQYGVDGSTVDALLRVVDERLYQAKREGRNRVVA 493


>gi|94263465|ref|ZP_01287278.1| PAS:GGDEF:EAL:GAF [delta proteobacterium MLMS-1]
 gi|93456195|gb|EAT06334.1| PAS:GGDEF:EAL:GAF [delta proteobacterium MLMS-1]
          Length = 931

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 16/190 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           + + +       +  L+  D L+ L N   F+  L           +  +++F D+D+FK
Sbjct: 475 TDITDKKNREMEVHSLAFYDPLTRLPNRRLFLDRLEQAFSASARSGQHGAVLFLDLDHFK 534

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ------EAAI 194
            +ND  GH +GD ++  ++ +L         V R GG+EF       S        +A  
Sbjct: 535 TLNDTRGHDIGDLLLTIVAKRLQEAVRGDDTVSRQGGDEFVVLLRNLSPDRHAAVSQAGR 594

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRN 253
           +A  +R  +   Q     G     + S GI+    H  P   +  RAD A+Y AK +GRN
Sbjct: 595 VAEKIR--VALDQPIDLDGQEHRTSASIGISLFLGHDTPADELFKRADAAMYQAKHAGRN 652

Query: 254 RVVCFSDIEN 263
           R   F     
Sbjct: 653 RARFFDPEMQ 662


>gi|15892244|ref|NP_359958.1| response regulator PleD [Rickettsia conorii str. Malish 7]
 gi|15619381|gb|AAL02859.1| regulatory components of sensory transduction system [Rickettsia
           conorii str. Malish 7]
          Length = 450

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 89/191 (46%), Gaps = 13/191 (6%)

Query: 79  SLLLGYISGSILKELFISYNR--ISQ---LSRIDCLSGLLNHSAFISSLGSYNEK----- 128
           S LL  I   + ++ +    R  + Q   L+  D L+GL N   F   L    EK     
Sbjct: 258 SELLARIRTQLRRKQYQDNLRNDLEQSVNLAVKDGLTGLFNRRYFDIHLKQIIEKTNKES 317

Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             L ++  DID FK +ND +GH  GDKV+  +S  L         + R GGEEF      
Sbjct: 318 IKLYLLMCDIDNFKHVNDTYGHQAGDKVLTIVSRILKNTLRVTDLIARFGGEEFTILLTD 377

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALY 245
               +A   A  +R  IE    +I      +  TIS G+ +   +E I + I RAD+A+Y
Sbjct: 378 IDISKAIATAERIRVKIEYMNFHIEDQIEPLKTTISIGVTKYKKEESIESFIERADKAMY 437

Query: 246 VAKKSGRNRVV 256
            AK +G+N+VV
Sbjct: 438 EAKTTGKNKVV 448


>gi|330721091|gb|EGG99228.1| GGDEF/EAL-domain containing protein [gamma proteobacterium
           IMCC2047]
          Length = 724

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 101/205 (49%), Gaps = 18/205 (8%)

Query: 77  TISLLLGYISGSILKEL--FISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNE 127
           T  L++  +S     EL   ++   I + +  D L+ L N +AF+  L           E
Sbjct: 255 TAGLIIDSVSARAAYELDRQLTEEVILRQATTDSLTNLPNRAAFMERLQHLLYQAERSGE 314

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           +L+++F D+D FK +ND  GH VGD V+  ++ +L+        +GRLGG+EF  A    
Sbjct: 315 RLAVIFIDVDNFKLVNDQHGHAVGDYVLTVIAKRLIRCVRKNDIIGRLGGDEFIVALSDV 374

Query: 188 SEQEA-AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALY 245
           S+  A   +A ++ + I   +I+        ++ S GI+        I ++I  AD A+Y
Sbjct: 375 SDAYAPEQVARNILREI-THEIS-KENNRFTMSCSIGISIYPDDAQVIDSLINHADVAMY 432

Query: 246 VAKKSGRNRVVCF-----SDIENNT 265
            AK+SGRN    F      DIEN++
Sbjct: 433 RAKESGRNNYQFFKASMKEDIENSS 457


>gi|322834728|ref|YP_004214755.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Rahnella
           sp. Y9602]
 gi|321169929|gb|ADW75628.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Rahnella
           sp. Y9602]
          Length = 697

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 65/278 (23%), Positives = 121/278 (43%), Gaps = 23/278 (8%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFY----IGLTPFYGLE--- 62
           ++W+      +S +     I  ++     I  + +I      +      +  F G++   
Sbjct: 156 ALWMAFNLRHQSPNVRLLRISAAVVMGAAIVGMHYIGMAAAQFPMDSHSMAAFSGVDNNW 215

Query: 63  ---YILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHS 116
               ++V  L+++ I++ IS+L G +      +   L  +   ++QL+  D L+ L N  
Sbjct: 216 LALLVIVVTLAILAITLIISILDGRMQARTSILASSLAQANRELTQLALHDNLTHLPNRL 275

Query: 117 AFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
                L    +K        +++FFD+D FK +ND FGH +GD+++  ++++L       
Sbjct: 276 LLEDRLSQAFQKASRGESQFAVLFFDLDGFKAVNDAFGHHIGDQLLISVTERLQSQLRAT 335

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC- 228
             + RLGG+EF      +   +A+ LA+ L  +I   +    S   + ++ S GIA    
Sbjct: 336 DTLARLGGDEFVLLVEITEPTDASQLADKLVHLIA--RPFYVSRYELLVSASVGIAVYPG 393

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             E    ++  AD A+Y  K SGRN    F    N   
Sbjct: 394 DGENERELMLNADAAMYHTKNSGRNGHSFFQPSMNANA 431


>gi|271500473|ref|YP_003333498.1| PAS/PAC and GAF sensor-containing diguanylate cyclase [Dickeya
           dadantii Ech586]
 gi|270344028|gb|ACZ76793.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Dickeya dadantii Ech586]
          Length = 722

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 99/237 (41%), Gaps = 17/237 (7%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY----------ISG 87
            I   +F+  +       T  +    I +E  +L    I+  L +            I  
Sbjct: 220 IIVPDMFVVQLHHLATDKTAIFKGSSIELETRALSGSLISTELTVSMWRDGNQTRYGIIL 279

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQIND 144
             + E      R+   +  D L+GL N +   S+L       E  +I+  D+D FK IND
Sbjct: 280 RDMTERQRYEERLFLQAHRDPLTGLANRTLLTSTLDQVLKNGEPAAIMIIDLDGFKDIND 339

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKII 203
           + GH  GD+++A ++ +L     +   V R+GG+EFA      S++ + A LA  +   I
Sbjct: 340 SLGHASGDEILASVARRLQDNAHSGDLVARMGGDEFAILLPNQSDEGQVARLAEKIIHDI 399

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +         I+ + S G+     H   +  ++  AD ALY AK  GRN    F+
Sbjct: 400 SQAVP--VDDKQINTSASIGLVMYPAHGTTVQDLLTSADLALYQAKADGRNCYRFFT 454


>gi|39998060|ref|NP_954011.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
 gi|39985005|gb|AAR36361.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
 gi|298507001|gb|ADI85724.1| sensor diguanylate cyclase, PAS domain-containing [Geobacter
           sulfurreducens KN400]
          Length = 315

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 86/181 (47%), Gaps = 9/181 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L      + +L+  D L+ + N           +  +  Y     I+F D+D+FKQIND 
Sbjct: 128 LRQQLENLQRLALCDPLTTIANRRYVEMSLNSRLEEMRRYGWHFGILFLDVDHFKQINDT 187

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD+V+  ++  LV    +   VGR GGEEF A     S ++   +A+  R ++E 
Sbjct: 188 HGHDTGDRVLKMVAKTLVNSARSFDVVGRWGGEEFIAVLANISRRQLPRIADRFRHLVEQ 247

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC-FSDIENN 264
           S   +     + +T+S G       + + +++ RAD  +Y +K++GRN V   F +    
Sbjct: 248 SSFRLDD-RLLRVTVSVGATMSHLDDTVESLVQRADTLMYRSKQAGRNCVSIGFGEEMPE 306

Query: 265 T 265
           T
Sbjct: 307 T 307


>gi|149376359|ref|ZP_01894122.1| diguanylate cyclase [Marinobacter algicola DG893]
 gi|149359373|gb|EDM47834.1| diguanylate cyclase [Marinobacter algicola DG893]
          Length = 613

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 8/175 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S ++EL  +  +++ LS  D L+GL N     + L           + L+I   D D+FK
Sbjct: 430 STMRELEKANRQLANLSLNDALTGLYNRRHMDNLLPELCAEARRTGQPLTIALLDADHFK 489

Query: 141 QINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
            +ND++GH  GD+ +  ++  L   V        R GGEEFA    G+  + A  + N +
Sbjct: 490 AVNDSWGHEFGDRCLQHIAGILRRHVKRPRDVAIRFGGEEFAILLPGTDAEGALGVCNGI 549

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            + I   ++    G  + +T+SAG A    ++    +  RAD+ALY AK  GRNR
Sbjct: 550 LEDIAAIRVPADDGTPVTLTMSAGTATLLQEDDERDLFRRADEALYRAKARGRNR 604


>gi|19070379|gb|AAL83832.1|AF347070_9 urease-associated hypothetical protein [Rhizobium leguminosarum bv.
           viciae]
          Length = 287

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 81/232 (34%), Positives = 112/232 (48%), Gaps = 1/232 (0%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           + F +  S    I    +I +    L  +GL P      I    +   +I  T+S +L  
Sbjct: 21  YVFALKMSFLAVILSGVIIALTMPSLDLLGLLPVTLAHAIGFSAIFSWLIGGTVSGMLSL 80

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQIND 144
            +G  +++L +S     +LSR D LSGLLN  AF  +L + +   S+V FD+D FK IND
Sbjct: 81  FAGFAMRDLALSRAEFEKLSRTDTLSGLLNRRAFTEALDNVDSNASLVIFDVDRFKAIND 140

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD VI  +S  L   F     V RLGGEEF     G   +        +R  I 
Sbjct: 141 RFGHGCGDAVIIAVSAMLTSAFDEMAVVARLGGEEFGVIVSGEPLEARMERIEGVRARIA 200

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  I  + G  I IT+S G+A+         +   AD+ALY+AK  GRNRVV
Sbjct: 201 SGAIK-AEGHEIRITVSGGVADLVTGRHKQAVYASADRALYLAKALGRNRVV 251


>gi|310643269|ref|YP_003948027.1| diguanylate cyclase with pas/pac sensor [Paenibacillus polymyxa
           SC2]
 gi|309248219|gb|ADO57786.1| Diguanylate cyclase with PAS/PAC sensor [Paenibacillus polymyxa
           SC2]
          Length = 327

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 82/173 (47%), Gaps = 12/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           +EL     ++  ++  D L+GL N   F   L              S++  DID FK IN
Sbjct: 152 QELVRINLQLETMASTDPLTGLKNRRYFQDQLLVSLASFQETGIPFSLLIIDIDRFKSIN 211

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHPVGD V+  L++ L  +      V R GGEEF     G+ ++EA   A   R + 
Sbjct: 212 DTYGHPVGDLVLTNLAELLQSMSREMDIVARYGGEEFVIILPGNDQEEAIRTAERYRSMT 271

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +            IT+S G+A     +   +I+++AD ALY +K  GRNRV 
Sbjct: 272 ASR-----DWGEYSITVSIGVATVTQADTEQSIVHQADFALYASKSGGRNRVT 319


>gi|300692479|ref|YP_003753474.1| integral membrane sensor protein; GGDEF, MHYT and EAL domains
           [Ralstonia solanacearum PSI07]
 gi|299079539|emb|CBJ52217.1| putative integral membrane sensor protein; putative GGDEF, MHYT and
           EAL domains [Ralstonia solanacearum PSI07]
          Length = 701

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 23/280 (8%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL-FYIGLTPFYGLEY 63
           L    ++W+      +S          S+   + I  + +       F +G         
Sbjct: 151 LASGAALWIAFRLRRQSGRVRAMRAGASVVMGLAIVGMHYTGMAAAGFPLGSICGAARGG 210

Query: 64  ILVENLSLVIISITISLLLGYISGSIL------------KELFISYNRISQLSRIDCLSG 111
           + VE L+LVII +T+++L   +  S+L              L  +   ++ L+  D L+ 
Sbjct: 211 VSVEWLALVIIVVTLAVLAMALVISVLDLRMEARTAVLATSLAEANQALAYLALHDNLTK 270

Query: 112 LLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           L N       L    +         +++F D+D FK +ND +GH  GD ++A ++ ++V 
Sbjct: 271 LSNRLLLEDRLEQAIQSAGRNRGSFALMFLDLDGFKAVNDVYGHHAGDLLLADVARRIVA 330

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                  V R+GG+EF   A  S   +A  LA+ L   +      +  G  + ++ S GI
Sbjct: 331 CVRQQDTVARVGGDEFVVLAGVSEPADAGTLADTLLAAVRG--PFLVDGHELRVSTSIGI 388

Query: 225 AERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           A           ++  AD A+Y AK  GR+    F    N
Sbjct: 389 ALYPGDGAGQHDLLTNADAAMYHAKGMGRDTYCFFEASMN 428


>gi|297624605|ref|YP_003706039.1| diguanylate cyclase with GAF sensor [Truepera radiovictrix DSM
           17093]
 gi|297165785|gb|ADI15496.1| diguanylate cyclase with GAF sensor [Truepera radiovictrix DSM
           17093]
          Length = 701

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 75/169 (44%), Gaps = 8/169 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
             R+ Q S  D L+GL N                   E LS+V FD+D+FK+ ND +GH 
Sbjct: 515 RERLRQQSVRDPLTGLFNRRHLEEALELELHRAERRREPLSVVMFDVDHFKRFNDTYGHD 574

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  +S  +           R GGEEF     G     A   A  LR  ++   + 
Sbjct: 575 AGDAVLRSVSALVTRHIRAGDLPCRFGGEEFLLVQPGLGAPHAWERAESLRAAVQALALE 634

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +      ++IS G+A    H      ++  AD+ALY AK++GRNR V 
Sbjct: 635 HAGRALGRVSISVGVATYPDHAASAEALVRAADEALYRAKRAGRNRTVL 683


>gi|291615266|ref|YP_003525423.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291585378|gb|ADE13036.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 713

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 16/188 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           +L    + +   +  D L+GL N    +  L            + +++F D+D FK +ND
Sbjct: 267 QLENMNDLLQSQATSDPLTGLPNRRFMLDRLKHALASSSRSGREGALLFIDLDNFKTLND 326

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA------ND 198
             GH VGD+++  ++ +L         V RLGG+EF       SE++    A        
Sbjct: 327 TLGHDVGDQLLQQVAHRLETCVREGDTVARLGGDEFVVMLEDLSEKDLEAAAQTEAVGEK 386

Query: 199 LRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +  +Q           T S G      H++ +  ++ +AD A+Y AK++GRN +  
Sbjct: 387 ILAAL--NQPYQLGKHEYRNTPSIGATLFNDHQQSLDELLKQADIAMYQAKRAGRNALRF 444

Query: 258 FSDIENNT 265
           F      T
Sbjct: 445 FDPQMQET 452


>gi|239909078|ref|YP_002955820.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239798945|dbj|BAH77934.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 434

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/160 (33%), Positives = 72/160 (45%), Gaps = 11/160 (6%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+  LN            +    Y    S+   DID+FK IND+ GH  GD V+
Sbjct: 268 LANRDPLTRTLNRRKLGDVLEAETARAARYATPFSLALLDIDHFKHINDSHGHDAGDAVL 327

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L+ ++         + R GGEEF  AA G     AA LA  LR+ + +          
Sbjct: 328 VELARRITASLRQVDRLARFGGEEFVVAAPGIDLAGAAELAERLRRAVADEPFAGVG--- 384

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +T S G+A     +    +I RAD ALY AK  GRNRV
Sbjct: 385 -RVTASFGLAAWRPGDKPEDLIKRADAALYRAKDGGRNRV 423


>gi|220934471|ref|YP_002513370.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995781|gb|ACL72383.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
          Length = 926

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 16/191 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + + E   +   I +L+  D L+ L N S     L              +I+F D+D FK
Sbjct: 474 TDITERKRAEEEIRRLAFYDSLTELPNRSLLYDRLRLAMASAARSRHHGAILFLDLDNFK 533

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN--- 197
            IND  GH VGD+++  ++ ++         + RLGG+EF         ++A        
Sbjct: 534 DINDTLGHDVGDELLRQVASRMQGTIRETDTLARLGGDEFVIILNDLHPEQAQAAVEAET 593

Query: 198 ---DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253
               L  ++   +         H T S G       E  +  ++ +AD A+Y AK SGRN
Sbjct: 594 LGSKLLHLLA--EPFRLGEHERHCTPSIGATLFGDGEVNVDELLKQADLAMYRAKDSGRN 651

Query: 254 RVVCFSDIENN 264
            +  F    + 
Sbjct: 652 TLCFFEPEMHQ 662


>gi|253698720|ref|YP_003019909.1| diguanylate cyclase with PAS/PAC sensor [Geobacter sp. M21]
 gi|251773570|gb|ACT16151.1| diguanylate cyclase with PAS/PAC sensor [Geobacter sp. M21]
          Length = 803

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 11/183 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           +    + E  ++  R+  L+  D L+ L N   F   L         Y   L+++F D+D
Sbjct: 621 VIFRDITERKLAKARLETLAHYDSLTSLPNRVLFFDRLRHAVCEAKRYQHPLALMFLDLD 680

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA 196
            FKQ+ND  GH  GD V+     +L         V R+GG+EF       + +++AA++A
Sbjct: 681 SFKQVNDRLGHAAGDAVLVEAGYRLRECVRACDMVARMGGDEFTIILTKMADKEDAALVA 740

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             + +        +  G S  + +S GI      +  +  ++  AD A+Y AK+ G+N  
Sbjct: 741 ERVIESFAL--PFLVEGESAQVGVSIGICVYPDCDIDLDGMVRSADYAMYRAKQDGKNVY 798

Query: 256 VCF 258
             +
Sbjct: 799 RFY 801


>gi|237748749|ref|ZP_04579229.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacter formigenes OXCC13]
 gi|229380111|gb|EEO30202.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacter formigenes OXCC13]
          Length = 870

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 97/206 (47%), Gaps = 14/206 (6%)

Query: 69  LSLVIISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L++ I+      ++ YI   + + +     +    +   D L+GL N    +  L     
Sbjct: 410 LTIKIVRDMDEKIISYIGVLLDISQNDFLEDHTRYMIEHDFLTGLPNRILLLDRLGQTLI 469

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                + + +++F D+D FK IND  GH +GD+++  ++ +L         V R GG+EF
Sbjct: 470 AAERNHRRAAVMFLDLDKFKHINDTLGHAIGDRLLQQVAQRLTQCVRKNDTVSRQGGDEF 529

Query: 181 AAAALGSSE-QEAAILANDLRKII-ENSQINISSGPSIHITISAGIAERC-HKEPISTII 237
                   E  +AA++AN++   + +N QI       + IT S GIA      + I T++
Sbjct: 530 VILLSDIGEADDAAMVANNIMHTLSQNYQI---ENYEMSITSSIGIALFPEDGKEIDTLL 586

Query: 238 YRADQALYVAKKSGRNRVVCFSDIEN 263
             AD A+Y AK++GRN    F+   N
Sbjct: 587 KNADTAMYHAKENGRNAYQFFNAEMN 612


>gi|224826006|ref|ZP_03699109.1| diguanylate cyclase with PAS/PAC sensor [Lutiella nitroferrum 2002]
 gi|224601643|gb|EEG07823.1| diguanylate cyclase with PAS/PAC sensor [Lutiella nitroferrum 2002]
          Length = 650

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 9/176 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           L E+    + + +    D L+G+ N      +L           + ++++  D D+FK+I
Sbjct: 460 LNEIESLQSGLKEQLVRDPLTGVFNRRYLDDALPRVLAHTLALGKPVALLMLDADHFKRI 519

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD V++ L  +L     +   V R GGEEF     G S + A   A  LRK+
Sbjct: 520 NDTYGHKAGDCVLSTLGARLRDSLRSNDMVCRYGGEEFLIVLPGMSLEHAIAKAEQLRKV 579

Query: 203 IENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++   I      ++++T+S G+A    H E   ++++ AD ALYVAK SGR+R+  
Sbjct: 580 VQQWPIEALD-HTLNVTVSIGVACSPLHAEDAESLVHAADTALYVAKSSGRDRLCV 634


>gi|220905592|ref|YP_002480904.1| PAS/PAC sensor-containing diguanylate cyclase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869891|gb|ACL50226.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 324

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 61/180 (33%), Positives = 89/180 (49%), Gaps = 10/180 (5%)

Query: 83  GYISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFD 135
            +  G++  +L     R+ Q    S  D L+GL         LG Y     +    +  D
Sbjct: 130 SHTIGALRSQLDSMITRVRQADESSLTDALTGLYTRKYLDMVLGRYTRLEKKPFCCIMLD 189

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D+FKQIND+FGH VGD V+  ++  +         V R GGEEF     GS  ++A   
Sbjct: 190 VDHFKQINDSFGHLVGDSVLKDVAQVIRRCVREMDTVCRYGGEEFVVLMPGSLLEQAEQA 249

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A  +R+ +      IS   S  +T+S G +E    E    +++RAD+ALY AK+SGRNRV
Sbjct: 250 AERIRRAVSGM---ISGPDSRPVTVSLGCSEYEMDEDALQVLHRADKALYGAKRSGRNRV 306


>gi|300855913|ref|YP_003780897.1| membrane associated GGDEF domain-containing protein [Clostridium
           ljungdahlii DSM 13528]
 gi|300436028|gb|ADK15795.1| membrane associated GGDEF domain containing protein [Clostridium
           ljungdahlii DSM 13528]
          Length = 378

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 79/256 (30%), Positives = 122/256 (47%), Gaps = 26/256 (10%)

Query: 29  IYFSIFFSIFIATVIFIAN---------IFLFYIGLTPFYGLEYILVENLSLVIISITI- 78
           I+F +     I   IFI+N         ++     L        IL++N  L++  + I 
Sbjct: 107 IFFLVINLFLIIGFIFISNTKTTIKNKWVYSTLYSLVVSSIGSIILIKNTQLLVQFLIIY 166

Query: 79  ---SLLLGYISGSILKEL---FISYNRISQLSRIDCLSGLLNHSAFISSLGS-------- 124
              +LLL Y     ++ L   F +Y  +   + ID L+GL N   F  SL          
Sbjct: 167 YLNNLLLTYFVYKFMEHLSKAFEAYRTLRTEASIDFLTGLNNVRQFNKSLHRISIAVQKK 226

Query: 125 -YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
              + LS++F DIDYFK+IND +GH  GD V+  L++ L         + R GGEEF+  
Sbjct: 227 EEIQYLSLIFLDIDYFKEINDKYGHGSGDIVLKNLANILTNTCRAFDIISRNGGEEFSVL 286

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQ 242
            L     +A  +A  +R+ +E    +IS+  +IHITIS G++        I  ++  AD 
Sbjct: 287 LLNCPTADAIQVAERIRQNVEAYSFHISNKTTIHITISIGVSTYPSLTNNIDNLLSDADT 346

Query: 243 ALYVAKKSGRNRVVCF 258
           ALY AK  GRN+++ +
Sbjct: 347 ALYKAKNEGRNKIILY 362


>gi|291279016|ref|YP_003495851.1| hypothetical protein DEFDS_0613 [Deferribacter desulfuricans SSM1]
 gi|290753718|dbj|BAI80095.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 324

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 11/176 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQ 141
            + E     N + + +  D L+ + N   F S L +  EK+        ++FFDID+FK+
Sbjct: 152 DITEQEKEINELMKKAIYDELTQIYNRRYFQSVLKNELEKVKRYNIDSCLLFFDIDFFKK 211

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH +GD V+ +LS  +     T     R+GGEEFA     ++ ++A  +A  +R 
Sbjct: 212 INDTYGHDIGDLVLKYLSSLVKNSIRTTDQFFRIGGEEFAIILTNTTLKDATQVAEKIRI 271

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I EN            +TIS GI +  + +   ++  RAD+ALY +KKSGRN+V  
Sbjct: 272 ITENYTFEKVG----KVTISIGITKIKNTDTEESLYKRADEALYQSKKSGRNKVTV 323


>gi|217975002|ref|YP_002359753.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Shewanella baltica OS223]
 gi|217500137|gb|ACK48330.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS223]
          Length = 1490

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 11/191 (5%)

Query: 85   ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
            +  S + E   +   + +L+  D L+GL N S F S L           EKL+++F D+D
Sbjct: 1037 VVFSDITERKQTEADLRRLANYDVLTGLPNRSLFSSRLLQSIQAAQQTGEKLALLFLDLD 1096

Query: 138  YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILA 196
             FK +ND++GH +GD ++   S +L     +   + R GG+EF      + S  +   +A
Sbjct: 1097 RFKHVNDSYGHSMGDALLVEASSRLQSCIASEHMLCRFGGDEFVILLRNANSIDDINHIA 1156

Query: 197  NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
              L + I  +   +  G   +I+ S GI+            I  AD A+Y AK+ GR   
Sbjct: 1157 ERLLEQI-VAPFKLY-GREFYISTSIGISIWPDDAVQPEAFIKNADLAMYHAKEEGRGNF 1214

Query: 256  VCFSDIENNTC 266
              +S   N   
Sbjct: 1215 QYYSSERNAQA 1225


>gi|313682742|ref|YP_004060480.1| diguanylate cyclase with extracellular sensor [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155602|gb|ADR34280.1| diguanylate cyclase with extracellular sensor [Sulfuricurvum
           kujiense DSM 16994]
          Length = 754

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 84/173 (48%), Gaps = 12/173 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQIND 144
           L     R+ +LS  D L+G+ N       LG   +K+        +I+  D+D+FK IND
Sbjct: 585 LKRYNTRLLELSTTDKLTGIYNRQKTDEKLGHEQQKVNRYRGYHCTIMMIDVDHFKNIND 644

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD+++  L++ +         +GR GGEEF      +S  EAA +A  LR  + 
Sbjct: 645 TFGHQEGDRILQKLAEVMKKSLRQSDMIGRWGGEEFMVILSHTSLDEAATVAEHLRHTVN 704

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                        +TIS G+ E  + E +   + R D ALY AK+SGRN VV 
Sbjct: 705 EFPFT----ELYPVTISIGVGEFMYGEEVHECVARVDAALYRAKESGRNSVVL 753


>gi|302188295|ref|ZP_07264968.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 730

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 19/214 (8%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +G   +L  ++  + ++ T  LL+   +   +  L  +  +I  L+  D L+GL N +  
Sbjct: 245 HGAPLVLDISVEFITLNNTACLLM---NARDIGALKNAQAQIQHLAYHDPLTGLPNRALL 301

Query: 119 ISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           +  L          N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         
Sbjct: 302 LDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 361

Query: 172 VGRLGGEEFAAAALGSS------EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
           V RLGG+EF     G         ++   LA++LR ++         G  + +T S G+ 
Sbjct: 362 VARLGGDEFVVLICGLEGSQDQVTRQVRELADNLRNLLAEPMF--LDGHRLQVTPSIGVV 419

Query: 226 ERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
                    + ++ RAD ALY AK  GRN    F
Sbjct: 420 LIPDDGLTPADLLKRADIALYRAKDCGRNASQFF 453


>gi|107104589|ref|ZP_01368507.1| hypothetical protein PaerPA_01005668 [Pseudomonas aeruginosa PACS2]
          Length = 671

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 78/164 (47%), Gaps = 8/164 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            Q +  D L+GL N +A    L             L +   DID+FK+IND+FGH  GDK
Sbjct: 508 RQKALTDPLTGLPNRAALSERLEQEVARRQRDGGDLLLAVLDIDHFKRINDDFGHLAGDK 567

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  ++ +L        F+ R GGEEF      +S +    L   LR  I     +   G
Sbjct: 568 VLKIIAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHFK-G 626

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             + IT SAGI      E    +  RADQALY AK++GR+R+  
Sbjct: 627 EPLSITCSAGITAFEGNEAGEAVFERADQALYRAKRAGRDRLEV 670


>gi|73539344|ref|YP_299711.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Ralstonia eutropha JMP134]
 gi|72122681|gb|AAZ64867.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Ralstonia eutropha JMP134]
          Length = 1076

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 13/184 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQ 141
            L E       I  L+  D L+GL N +               + E+++++  D+D+FK 
Sbjct: 610 DLTERHRVDEYIRHLALHDALTGLPNRAELTERCEAVLLHARRHGERVALLLLDLDHFKH 669

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           IND+ GHPVGD V+  ++D+L         V R+GG+EFA    G   + EA + A+ + 
Sbjct: 670 INDSLGHPVGDDVLRTIADRLKAAVRQGDLVARMGGDEFAVVLGGLRHDTEAELAASKIL 729

Query: 201 KII-ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             + E  +I    G  + +T S GIA      E ++ ++  AD ALY AK+ GR ++  F
Sbjct: 730 ARVSEALEI---GGQRLRVTPSLGIAMFPADGESLTDLLKSADAALYAAKQGGRAQLRRF 786

Query: 259 SDIE 262
           +   
Sbjct: 787 ASEM 790


>gi|307721992|ref|YP_003893132.1| diguanylate cyclase with hemerythrin-like metal-binding
           domain-containing protein [Sulfurimonas autotrophica DSM
           16294]
 gi|306980085|gb|ADN10120.1| diguanylate cyclase with hemerythrin-like metal-binding domain
           protein [Sulfurimonas autotrophica DSM 16294]
          Length = 725

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 9/178 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHS----AF---ISSLGSYNEKLSIVFFDIDYFKQI 142
           LK       ++ +++ ID L+G +N       F   +     Y   LS +  DID+FKQ+
Sbjct: 546 LKNKQKENLQLEEMAFIDPLTGAVNRRKGEELFALELERATRYKRDLSFLMLDIDHFKQV 605

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH VGD+V+   S   + +      V R+GGEEFA     ++ + A   A   R+ 
Sbjct: 606 NDTYGHAVGDEVLKHFSSICLKMARHLDVVARIGGEEFAVMLPETNSEGAYEFAERFREK 665

Query: 203 IENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           I NS + I +  +I  ++S GI+     + + + TI+ RAD+ALY AKKSGRN    +
Sbjct: 666 ICNSSVIIDNTTTIKYSVSIGISSLDITYDKDVKTILERADKALYQAKKSGRNTTNIY 723


>gi|78066673|ref|YP_369442.1| diguanylate cyclase [Burkholderia sp. 383]
 gi|77967418|gb|ABB08798.1| diguanylate cyclase [Burkholderia sp. 383]
          Length = 466

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 22/233 (9%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI------LK 91
           ++A  IF    FL        YG+   L    S   I  +   L+  +S S+      L+
Sbjct: 240 WLAHAIFAGGFFLLS------YGVVQALQTTRSFSAI-YSQEDLMSRLSESMARTESALQ 292

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL  +  ++  ++  D ++G  N   FI+ +               ++  D+D FK IND
Sbjct: 293 ELRRTNQKLEYMAATDPMTGASNRRQFIAQVEREMVRAERDGTPFCLLALDLDNFKNIND 352

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH +GD+V+  +  Q +        + R+GGEEF A       + A + A  +R  I 
Sbjct: 353 AYGHQIGDEVLRGVVRQCLDAIRPAGGLARVGGEEFMALLPDMPLEGARMTAERVRSSIA 412

Query: 205 NSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +S   +     + +T+S G+A+       +  ++   D+ LY AK+ GRNRVV
Sbjct: 413 SSPFGL-DFKRVQVTVSVGVAQYGADGSTVDALLRVVDERLYQAKREGRNRVV 464


>gi|117925510|ref|YP_866127.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Magnetococcus sp. MC-1]
 gi|117609266|gb|ABK44721.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Magnetococcus sp. MC-1]
          Length = 971

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 90/207 (43%), Gaps = 12/207 (5%)

Query: 67  ENLSLVIISITISLLLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-- 123
           E LS+  ++      + Y++  S + +   +   I   +  D L+ L N + F   L   
Sbjct: 497 EWLSIATVTNDKGETVQYVAAFSDITKRKQAEETILHQANYDFLTDLPNRNLFHDRLQTE 556

Query: 124 -----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                   ++++++F D+D FK +ND  GH VGD+++  ++ +L         + RLGG+
Sbjct: 557 LKRSQRSGQQVALLFIDLDRFKFVNDTLGHNVGDQLLREVAIRLGHCVRESDTIARLGGD 616

Query: 179 EFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTI 236
           EF          +  A LA  +   +E           + I+ S GI       + +  +
Sbjct: 617 EFTVILPELHGPEGVARLAQGMIDKLEER--YCIQDHELFISASIGITIYPEDADNMMDL 674

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIEN 263
           +  AD A+Y AK++GR     ++   N
Sbjct: 675 VKNADVAMYRAKENGRGSFCFYTAEMN 701


>gi|297539378|ref|YP_003675147.1| PAS/PAC sensor-containing diguanylate cyclase [Methylotenera sp.
           301]
 gi|297258725|gb|ADI30570.1| diguanylate cyclase with PAS/PAC sensor [Methylotenera sp. 301]
          Length = 953

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 20/207 (9%)

Query: 71  LVIISITISLLLG------YISGSI--LKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +V + +++S+         Y    I  + E  I  N + Q +  D L+ L N    +  L
Sbjct: 747 IVWVQLSVSIFRNEDDAAQYFIAQIEDITERKIRDNEVHQHAYFDTLTKLPNRRMLMDRL 806

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     N  +++ F D+D+FK IND+ GH VGD ++   + +L+        V RL
Sbjct: 807 SQELSQAERDNRIVALFFLDLDHFKHINDSLGHDVGDLILKEAALRLLSCVRPNDMVSRL 866

Query: 176 GGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--P 232
           GG+EF       S+   A  +A  + +  E   I++ +G  + I+ S GIA R       
Sbjct: 867 GGDEFVILLSEISDANYAKKVAEKVLRKFEE-PIDV-NGKEVIISASIGIALRTGDVKIT 924

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFS 259
              ++  AD A+Y +K +GRNR   ++
Sbjct: 925 FKQLMKNADMAMYESKATGRNRYYFYN 951


>gi|294497759|ref|YP_003561459.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium QM
           B1551]
 gi|294347696|gb|ADE68025.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium QM
           B1551]
          Length = 310

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 91/179 (50%), Gaps = 11/179 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           +L  +  ++  LS  D L+GL N  +    L           E LS + FDIDYFK  ND
Sbjct: 123 DLRKANKKLEMLSMKDGLTGLNNRRSLDKQLEIEWEYAQKEKEPLSFLLFDIDYFKAYND 182

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD+ +  +++     VF  P F  R GGEEF      +++ EA  +A  +R+ +
Sbjct: 183 TYGHIQGDECLKEVANIAKSVVFDEPAFFARYGGEEFGILLPRANQYEAIKMAEAIRQQV 242

Query: 204 ENSQINISSGPSIH-ITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           E   I   +      +TIS GI         P  +I+++ADQALY AK++GRNR+  +S
Sbjct: 243 EQRGIIHQASDLFKCVTISVGIMTVVPSENIPPISIVHQADQALYEAKRTGRNRISVYS 301


>gi|148657915|ref|YP_001278120.1| PAS/PAC sensor-containing diguanylate cyclase [Roseiflexus sp.
           RS-1]
 gi|148570025|gb|ABQ92170.1| diguanylate cyclase with GAF sensor [Roseiflexus sp. RS-1]
          Length = 797

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +L+  D L+GL N   F       +     Y   ++++  D+D+FK IND +GH  GD 
Sbjct: 626 QRLATTDQLTGLFNRYHFFALAPRELERARRYRHDVALLIIDVDHFKTINDTYGHVAGDT 685

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  ++D +         + R GGEEF A    ++   A  +A  LR  IE + + + +G
Sbjct: 686 VLQHIADHMRRELRDADILARFGGEEFIALLPETNLTGALRVAGRLRATIEANPVPL-NG 744

Query: 214 PSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRVV 256
            SI  TIS G A        E + T+I RAD+ALY AK  GRN+V 
Sbjct: 745 QSIRATISVGCASLHPATRDEHLDTLIQRADRALYTAKAGGRNQVA 790


>gi|330809204|ref|YP_004353666.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377312|gb|AEA68662.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 790

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 12/178 (6%)

Query: 92  ELFISYNR-ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           E  ++Y   +  L+  D L+ L N S F       I     Y+ +L+++F D+D FKQ+N
Sbjct: 344 EAKVAYAENVEYLAYHDGLTALPNRSLFSKLLSRSIGEASRYHRQLAVLFLDLDRFKQVN 403

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKI 202
           D  GH  GD+++  ++ +L     T   V RLGG+EF       S +++ A  A  +   
Sbjct: 404 DTLGHDAGDQLLKEVALRLKACLRTSDTVARLGGDEFVILLPELSDDKDVATTAQKILGA 463

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           I     N+  G    +T S GI+          T+   AD A+Y AK+ G+N    +S
Sbjct: 464 IAR-PFNL-QGQEFRVTASVGISVFPQDGLDEQTLKKNADIAMYQAKQRGKNNFQFYS 519


>gi|320159087|ref|YP_004191465.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
 gi|319934399|gb|ADV89262.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
          Length = 685

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 12/183 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           S +  L    +++ +++  D L+ L N       +    E+       L+++F D+D FK
Sbjct: 496 SDISALKEHEHQLEKIAHYDPLTELPNRLLLKERMAQAMERSKRNNYYLAVLFLDLDGFK 555

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
           ++ND FGH  GD V+  ++ ++  +      + RLGG+EF           +   LA   
Sbjct: 556 EVNDTFGHDAGDDVLYHVAARMKDLVREGDTLARLGGDEFIILVPRVRDSYDIEPLAQRF 615

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
              I  SQ        I ++ S G++     E     ++I +ADQA+Y AK +G+N  + 
Sbjct: 616 LHSI--SQPITIGKEEITLSASIGVSIYFGGEQQDSDSLIRQADQAMYQAKLAGKNCYMF 673

Query: 258 FSD 260
           +SD
Sbjct: 674 YSD 676


>gi|190894935|ref|YP_001985228.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190700596|gb|ACE94678.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 628

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/192 (29%), Positives = 85/192 (44%), Gaps = 13/192 (6%)

Query: 77  TISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NE 127
           T   ++  I+ +   E  L +S  ++  L+  D L+G++N  AF              N 
Sbjct: 422 TAMAVVSDITATKQAEIALRLSAEQLKNLAETDGLTGIVNRRAFDEVFARETAGNARRNT 481

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALG 186
             S++  DID FK  ND +GHP GD+ +  +S  L   V      V R GGEEF      
Sbjct: 482 PFSLLMVDIDRFKAYNDTYGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFVVFLPD 541

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK---EPISTIIYRADQA 243
           +S + A I+A    + +    I  S      +T S GI+           + ++  AD A
Sbjct: 542 TSAKGAMIVAEQFARRLAQENIVHSGSEFGRVTASIGISCATGAMLRASPNRLLAEADTA 601

Query: 244 LYVAKKSGRNRV 255
           LY AK  GRNR+
Sbjct: 602 LYEAKTQGRNRI 613


>gi|254239213|ref|ZP_04932536.1| hypothetical protein PACG_05404 [Pseudomonas aeruginosa C3719]
 gi|126171144|gb|EAZ56655.1| hypothetical protein PACG_05404 [Pseudomonas aeruginosa C3719]
          Length = 823

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 11/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            +        R+S  +  D L+GL N   F       +  L   + + +++F D+D FK 
Sbjct: 363 DMTRERQYMARLSWQATHDALTGLTNRREFEYRLQIALERLERNSGRHALMFLDLDQFKL 422

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD+++  +   L         + RLGG+EF         ++A  +A+ LRK
Sbjct: 423 VNDTCGHAAGDELLRQVCTLLQQGLREGDTLARLGGDEFGILLENCPAEKAVEIADHLRK 482

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF-- 258
            I++     S G   + T+S G+         +   +  AD A Y+AK+ GRNRV  F  
Sbjct: 483 TIQDLHFTWS-GQPFNCTVSVGLVHLLPGISTLEEALRSADMACYMAKEKGRNRVQVFHQ 541

Query: 259 SDIE 262
            D+E
Sbjct: 542 DDVE 545


>gi|172035605|ref|YP_001802106.1| putative diguanylate cyclase [Cyanothece sp. ATCC 51142]
 gi|171697059|gb|ACB50040.1| putative diguanylate cyclase [Cyanothece sp. ATCC 51142]
          Length = 493

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 82/178 (46%), Gaps = 11/178 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           EL  +  ++  L  +D L+ + N   F   L    ++       +S++  D+DYFK  N+
Sbjct: 312 ELQQALKKLKALVNLDGLTQIFNRRYFDEVLYREWQRGRREKSVISLILCDVDYFKIYNE 371

Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  +   V      V R GGEEF      +    A  LA  +R  I
Sbjct: 372 TYGHLGGDSCLQEVAQGIRRQVKRPSDLVARYGGEEFVILLPNTDLNGALALAEMIRNAI 431

Query: 204 ENSQINISSG-PSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCF 258
           E   I   +   S H+TIS G+  +  +E      +I  AD ALY AK++GRN V  F
Sbjct: 432 EAMNIPHENSLVSDHVTISMGVTSKIPQETDEYEHLIEEADDALYQAKENGRNCVCYF 489


>gi|158522326|ref|YP_001530196.1| diguanylate cyclase with PAS/PAC sensor [Desulfococcus oleovorans
           Hxd3]
 gi|158511152|gb|ABW68119.1| diguanylate cyclase with PAS/PAC sensor [Desulfococcus oleovorans
           Hxd3]
          Length = 458

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 88/201 (43%), Gaps = 13/201 (6%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---- 123
            ++LV  +I    +L Y     +     +   I +++  D L+GL N   F   LG    
Sbjct: 258 WINLVATTIGPDRVLAY--CQDITRRKQTEEEIQKMAYHDALTGLPNRKLFSDRLGIALA 315

Query: 124 ---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 + ++ +  D+D FK +ND FGH VGD+++   +++L         V RLGG+EF
Sbjct: 316 QARRDQKGIAAIILDLDNFKDVNDTFGHDVGDRLLQAAAERLSAALRKSDTVARLGGDEF 375

Query: 181 AAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-IIY 238
                     ++   +A  +     N   +I +   I +T S GIA           ++ 
Sbjct: 376 VLILPDLKGTEDVDRVAQKIVDGFRN-PFSIDTHQLI-VTTSIGIAVYPRDGISEVLLLK 433

Query: 239 RADQALYVAKKSGRNRVVCFS 259
            AD A+Y  K++GRN    F+
Sbjct: 434 HADIAMYQVKQAGRNGYRFFN 454


>gi|254243039|ref|ZP_04936361.1| hypothetical protein PA2G_03827 [Pseudomonas aeruginosa 2192]
 gi|126196417|gb|EAZ60480.1| hypothetical protein PA2G_03827 [Pseudomonas aeruginosa 2192]
          Length = 671

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 78/164 (47%), Gaps = 8/164 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            Q +  D L+GL N +A    L             L +   DID+FK+IND+FGH  GDK
Sbjct: 508 RQKALTDPLTGLPNRAALSERLEQEVARRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDK 567

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  ++ +L        F+ R GGEEF      +S +    L   LR  I     +   G
Sbjct: 568 VLKIIAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHFK-G 626

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             + IT SAGI      E    +  RADQALY AK++GR+R+  
Sbjct: 627 EPLSITCSAGITAFEGNEAGEAVFERADQALYRAKRAGRDRLEV 670


>gi|254245147|ref|ZP_04938469.1| hypothetical protein PA2G_06035 [Pseudomonas aeruginosa 2192]
 gi|126198525|gb|EAZ62588.1| hypothetical protein PA2G_06035 [Pseudomonas aeruginosa 2192]
          Length = 818

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 11/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            +        R+S  +  D L+GL N   F       +  L   + + +++F D+D FK 
Sbjct: 359 DMTRERQYMARLSWQATHDALTGLTNRREFEYRLQIALERLERNSGRHALMFLDLDQFKL 418

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD+++  +   L         + RLGG+EF         ++A  +A+ LRK
Sbjct: 419 VNDTCGHAAGDELLRQVCTLLQQGLREGDTLARLGGDEFGILLENCPAEKAVEIADHLRK 478

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF-- 258
            I++     S G   + T+S G+         +   +  AD A Y+AK+ GRNRV  F  
Sbjct: 479 TIQDLHFTWS-GQPFNCTVSVGLVHLLPGISTLEEALRSADMACYMAKEKGRNRVQVFHQ 537

Query: 259 SDIE 262
            D+E
Sbjct: 538 DDVE 541


>gi|312963549|ref|ZP_07778031.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Pseudomonas fluorescens WH6]
 gi|311282355|gb|EFQ60954.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Pseudomonas fluorescens WH6]
          Length = 701

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 95/190 (50%), Gaps = 10/190 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           ++   + E+   + ++   +  D L+GLLN   F       +S     ++ L +++ D+D
Sbjct: 256 VTVLDMSEVRHLHQQLEFQAVTDPLTGLLNRRGFYQAVENTLSRSERVDQSLVLLYLDLD 315

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK++ND+ GH  GD+V+ ++S+QL     +   +GR+GG+EF A       + AA ++ 
Sbjct: 316 GFKRVNDSLGHDAGDRVLRWVSEQLQGCLRSYDIIGRMGGDEFTALLELEFPEHAAKISE 375

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
            L + +  S  +   G  + + +S GIA        ++ ++  AD A+Y AK++GR +  
Sbjct: 376 KLIERV--SVCHQVDGLDVMLGVSIGIATFPDCGSDLNGLLRAADIAMYEAKRAGRQQYR 433

Query: 257 CFSDIENNTC 266
            +    N   
Sbjct: 434 YYDQEMNGRA 443


>gi|307720381|ref|YP_003891521.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978474|gb|ADN08509.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica
           DSM 16294]
          Length = 519

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 82/179 (45%), Gaps = 11/179 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDY 138
           +G  + E  +   ++ +L+ ID L+G+ N   F             Y   LS++ FD+D 
Sbjct: 344 TGKDVTEQMLLEEKLRELAAIDKLTGISNRLRFDEVLQFSIDRAKRYKVNLSVILFDVDK 403

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++ND +GH  GD V+  ++            + R GG+EF          EA IL   
Sbjct: 404 FKKVNDTYGHLCGDDVLKMIAKIGHDSIRKSDLIARWGGDEFIILQSNIPSDEAQILVER 463

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           LR  IE+            +T+S G+      +   ++I RAD ALY AK+ GRNRV  
Sbjct: 464 LRHNIESYNFKDVG----KVTVSFGVTHFKEDDTKESLIKRADDALYEAKEHGRNRVEV 518


>gi|300868645|ref|ZP_07113257.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
 gi|300333339|emb|CBN58449.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
          Length = 1140

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 12/189 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDI 136
           ++   + E   + +++   +  D L+ L N +  +  LG          N +  ++F D+
Sbjct: 539 VNCHDVTERKAAEDQLLHDALHDALTELPNRALLMDRLGQALARARRNPNYRFGVIFLDL 598

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAIL 195
           D FK IND+ GH  GD+++  ++ +L+    +   V RLGG+EF            A   
Sbjct: 599 DRFKVINDSQGHQAGDRLLYAIARRLMSCLRSGDTVARLGGDEFIILLEEIEDVSVAIAT 658

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
           AN +++ +E  Q     G  + +T S GIA    + +    I+  AD A+Y AK  G+ R
Sbjct: 659 ANRIQQALE--QPLHLEGHKVTVTASMGIALSTPEYQWPGDILRDADIAMYRAKALGKAR 716

Query: 255 VVCFSDIEN 263
              F+   +
Sbjct: 717 YQVFAAAMH 725


>gi|302877365|ref|YP_003845929.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Gallionella capsiferriformans ES-2]
 gi|302580154|gb|ADL54165.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Gallionella capsiferriformans ES-2]
          Length = 1321

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 51/212 (24%), Positives = 99/212 (46%), Gaps = 13/212 (6%)

Query: 64   ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
            I  +  S+  I   +  L  YI+  S + +   +   +  L+  D L+GL N S F+  L
Sbjct: 854  IYPQWGSITAIFGELGDLRSYIAVFSDVSKAKQAEEHLYHLANHDSLTGLANRSKFVDYL 913

Query: 123  GS--------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
                         K+++ F D+D FK IND  GH +GD+ +  ++ ++         + R
Sbjct: 914  NHTLDLARRNRGHKVAVAFIDMDRFKIINDTLGHTIGDQFLKAIATRISSQCRNEDLLSR 973

Query: 175  LGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERCHK-EP 232
             GG+EF          ++  +A  +R+++E  +   +  G  +  T+S GI+      + 
Sbjct: 974  WGGDEFVLVMDRVDGPDS--VAEAVRRMMEVVRKPLLIDGHELEPTLSVGISFFPDDAQN 1031

Query: 233  ISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             + ++  AD A+Y  K++GRN    F++++ +
Sbjct: 1032 TTDLVKAADTAMYRVKENGRNGYAFFTELQAD 1063


>gi|213423733|ref|ZP_03356713.1| hypothetical protein Salmonentericaenterica_40358 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 348

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 73/266 (27%), Positives = 129/266 (48%), Gaps = 28/266 (10%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY------GLEYILVE----- 67
           + S+  + F++++ + F+  ++ ++ +  +   Y  L           L  +L       
Sbjct: 82  MWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLWLTALLASVQLNQ 141

Query: 68  --NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDCLSGLLNH 115
             N+  +++ +T++ +L Y   I      E ++ Y        R+  ++  D L+G  N 
Sbjct: 142 YVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANR 201

Query: 116 SAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MF 171
            +  S LG      E  +++  D+DYFK  NDN+GH  GD  +A ++  +     TP   
Sbjct: 202 RSMESFLGDALRQTEPFALIMLDVDYFKNYNDNYGHQAGDACLAKVACVVKRSIRTPADL 261

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKII-ENSQINISSGPSIHITISAGIAERCHK 230
           V R GGEEF      SS  EAA++A  ++  + E +  +++S  S  +T+S GI      
Sbjct: 262 VARYGGEEFVVVLPSSSLNEAALVAKRIQTNLRETALPHVASAVSETVTVSMGITLSTAG 321

Query: 231 EPISTIIYRADQALYVAKKSGRNRVV 256
           + ++ II RAD+ALY AK+ GRNR V
Sbjct: 322 DTVTGIIARADEALYRAKQQGRNRWV 347


>gi|13472974|ref|NP_104541.1| hypothetical protein mll3440 [Mesorhizobium loti MAFF303099]
 gi|14023722|dbj|BAB50327.1| mll3440 [Mesorhizobium loti MAFF303099]
          Length = 426

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 77/168 (45%), Gaps = 8/168 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
             + Q S  D  +GL N              +    + L+++  D+D+FKQ ND FGH  
Sbjct: 240 ETLRQQSIRDPNTGLYNRRYLEETSSRELRRMERSGQPLAMIMLDVDHFKQFNDTFGHEA 299

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  ++  L+        V R GGEEFA    G+S  +AA  A  LRK I+   +  
Sbjct: 300 GDLVLKQVAATLLDHARESDVVSRYGGEEFALMMPGTSLADAAERAEALRKAIKQLHLTH 359

Query: 211 SSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
                  IT S G++           I+  AD++LY AK  GR+RVV 
Sbjct: 360 RGRTLGTITASFGVSAFPELGASWVEIVNAADRSLYQAKADGRDRVVA 407


>gi|319784490|ref|YP_004143966.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170378|gb|ADV13916.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 713

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 81/187 (43%), Gaps = 10/187 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYF 139
           ++   + E   +  R++ L+  D L+GL N S F   L      +    L+I   D+D F
Sbjct: 268 VTFDDVTERRRTEERMTHLAHHDTLTGLPNRSMFRERLDLALEDTAATPLAIFSLDLDRF 327

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           K +ND +GHP GD ++  ++++L          V R GG+EF            A  LA 
Sbjct: 328 KAVNDTWGHPAGDWLLKTVAERLQRCLHNENDVVARFGGDEFVIIQFNFKGIANAEKLAK 387

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            + + I   +        +HI IS GIA          T++  AD ALY AK  GRN   
Sbjct: 388 RIVETI--GKPFRDKSREMHIGISLGIAVFPDDGGDADTLLRNADTALYRAKSEGRNLYR 445

Query: 257 CFSDIEN 263
            F    +
Sbjct: 446 FFEPGMD 452


>gi|296389513|ref|ZP_06878988.1| putative sensory box protein [Pseudomonas aeruginosa PAb1]
          Length = 844

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 10/187 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYF 139
           + + + +   ++ +I  LS  D L+GL N +     L            ++++  D+D F
Sbjct: 387 TAADITDEVEAHAKIQHLSLHDALTGLPNRNKLFQFLERLLAERAGKSPVAVLMLDLDRF 446

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILAND 198
           K IND  GHP GD V+  ++++L         V RLGG+EF   +   S + E     + 
Sbjct: 447 KPINDQHGHPAGDAVLYAIAERLRASTRDQDMVARLGGDEFVVVSTHVSSKLETEKFCSR 506

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L  +I         G S H+  S G+A    H      ++  AD A+Y AK +GRN    
Sbjct: 507 LIDVINREIAY--EGHSFHVGASIGVALAPEHGGDPRGLLRCADVAMYEAKAAGRNTWRF 564

Query: 258 FSDIENN 264
           + +  ++
Sbjct: 565 YLEAMDS 571


>gi|296274666|ref|YP_003657297.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
 gi|296098840|gb|ADG94790.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
          Length = 308

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 87/176 (49%), Gaps = 10/176 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           + L      + +LS  D L+ L N   F  +           N  +SI+  D+D FK IN
Sbjct: 132 ERLKKLNEELKELSSKDPLTQLYNRRYFTEAANTMQSLSIRNNHHISIIILDVDNFKNIN 191

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH +GDKVI  LS  L         V R GGEEF      +S   A  +A ++R+ +
Sbjct: 192 DTYGHSIGDKVIVSLSRILENNCRKSDIVARFGGEEFVILLYNTSLAFAQSVAENIRQNV 251

Query: 204 ENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++  + +        T+S G+A+      + I + I RAD+ALY AK+SG+N+V+ 
Sbjct: 252 QDYFVEVKE-EKFSFTLSLGVAQFDAQIDKDIESTINRADKALYNAKESGKNKVIV 306


>gi|17548621|ref|NP_521961.1| putative transmembrane protein [Ralstonia solanacearum GMI1000]
 gi|17430869|emb|CAD17551.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum GMI1000]
          Length = 512

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 100/233 (42%), Gaps = 20/233 (8%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           + +++A      +I+  +       GL         LV +   +++ L Y     L++  
Sbjct: 264 YPLYVAVGAATEDIYANWTSRAWAIGL---------LVAVFNLVTMALAYQFAKQLEKRL 314

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFG 147
            +  R ++L+  D L+GL N  A  + L    +        +S++  D+D FK  ND++G
Sbjct: 315 AAGRRHAELAITDALTGLPNRRALDAFLDKEWKRALRERWPVSVLMIDVDAFKPYNDHYG 374

Query: 148 HPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  GD  +  ++  +      +     R GGEEF      +  + A  +A  +R+ +   
Sbjct: 375 HLGGDTALKAVARCIQAHASRSGDLAARYGGEEFCIVLPHTDLEGAIAVAEHIRQAVLAL 434

Query: 207 QINISSGPSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRVV 256
            I  + GP+  +++S G A        +   T+   AD  LY AK  GRNR +
Sbjct: 435 HIPHAQGPAGILSVSIGAATDTPALSGDRAETLTQAADTQLYRAKTQGRNRTM 487


>gi|16329397|ref|NP_440125.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
 gi|1651878|dbj|BAA16805.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
          Length = 452

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 106/235 (45%), Gaps = 19/235 (8%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYI-LVENLSLVIISITISLLLGYISGSILKEL 93
           F   + T  F+     F I  + +Y    + L +  ++ +  IT           +  EL
Sbjct: 225 FVNLVETGTFLTQDIYFPIANSDWYHFVAVKLGDGFAVTVRDITD-------RKRMELEL 277

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNF 146
             +  ++  L+ ID L+ + N   F   L           + LS++  DIDYFK  ND +
Sbjct: 278 QAANQQLQLLANIDGLTHIANRRRFDEYLAQEWQRHCREQKPLSLILVDIDYFKAYNDLY 337

Query: 147 GHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           GH  GD  +  +++ LV +       V R GGEEF      ++ Q+A  +A ++ + I  
Sbjct: 338 GHQKGDDCLQKVANTLVDIAKRITDLVARYGGEEFVIVLPNTNRQDALAMAENMLQAIAA 397

Query: 206 SQINIS-SGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             I    S  S ++TIS G++      ++ I  II  ADQALY AK  GRNR + 
Sbjct: 398 LAIPHEGSSVSKYVTISIGVSSIIPMPEDTIERIISEADQALYSAKSQGRNRAIA 452


>gi|238797910|ref|ZP_04641401.1| hypothetical protein ymoll0001_35650 [Yersinia mollaretii ATCC
           43969]
 gi|238718215|gb|EEQ10040.1| hypothetical protein ymoll0001_35650 [Yersinia mollaretii ATCC
           43969]
          Length = 519

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 7/162 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++   ++ D ++ L N     ++L       +  S++  DID+FK IND +GH VGD+VI
Sbjct: 361 KLKFEAQTDPMTSLYNRRGLATTLEPIAQLGQPFSVIALDIDHFKLINDTYGHDVGDEVI 420

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L+ Q+         + R GGEEF     G++   A  +AN LR  +E  +I       
Sbjct: 421 KRLATQIRDSSRDTDILCRSGGEEFLMLLPGTTLDVATQVANRLRHNVEMMEIADIR--- 477

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             ITIS G+A    +      +  AD+ALY AK+ GRNRV  
Sbjct: 478 -PITISLGVAYWSGEGMPENALKLADEALYRAKQRGRNRVEV 518


>gi|194366180|ref|YP_002028790.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
 gi|194348984|gb|ACF52107.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
          Length = 479

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/197 (34%), Positives = 101/197 (51%), Gaps = 15/197 (7%)

Query: 72  VIISITISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128
           + I   I  +LGY   S+L ++ I   R  +  L+R D L+GL N   F  SLGS + + 
Sbjct: 270 LAIVGFIGAMLGYALRSVLTQVEIQRQRDELEALARRDPLTGLGNRRNFDESLGSAHRRA 329

Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFA 181
                 L+++  DID+FK++ND +GHP GD+ +  ++  L          + R GGEEF 
Sbjct: 330 RRQGLGLAVLMIDIDHFKRLNDTYGHPEGDRRLRAVAGILDGCLQRGDDLLARYGGEEFI 389

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYR 239
           AA        A  L   LR  +E + +  +      +TIS G+A +  +E      ++ R
Sbjct: 390 AALPSPDITHALSLGERLRAAVETAGLPAAEAV---VTISIGVAWQAARENGDPRDLVDR 446

Query: 240 ADQALYVAKKSGRNRVV 256
           ADQALY AK +GRNRV 
Sbjct: 447 ADQALYRAKHAGRNRVH 463


>gi|90578701|ref|ZP_01234511.1| hypothetical sensory box/GGDEF family protein [Vibrio angustum S14]
 gi|90439534|gb|EAS64715.1| hypothetical sensory box/GGDEF family protein [Vibrio angustum S14]
          Length = 339

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 104/222 (46%), Gaps = 17/222 (7%)

Query: 52  YIGLTPFYGLEYILVENLSLVII-SIT-----ISLLLGYIS--GSILKELFISYNRISQL 103
           +   +P  G    + +N++L  + S+T     I L +  ++        L  S  +++ L
Sbjct: 94  FSNFSPISGGADFMYQNMTLTPLKSLTGEYTHICLTITDVTDIAKNKNHLRESNEQLTHL 153

Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S  D L+ L N   + + L          ++ +++V FDID+FK +ND +GH  GD VI 
Sbjct: 154 SITDRLTQLYNRGHWENCLVEEFEHYQQMHQPMTLVMFDIDHFKNVNDTYGHVAGDAVIK 213

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++D +          GR GGEEF     G++    +     LRK +E + + +  G +I
Sbjct: 214 TIADIVRKAKRQSDIAGRYGGEEFGVILPGTTADMTSYFTERLRKKVERANV-VVDGKTI 272

Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++TIS G+ +         + + + D ALY +K  GRN+   
Sbjct: 273 NVTISLGVCQLHPGITNYESWLEQTDSALYESKNKGRNQTTI 314


>gi|330501418|ref|YP_004378287.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328915704|gb|AEB56535.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 601

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 63/237 (26%), Positives = 105/237 (44%), Gaps = 11/237 (4%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
           F++  S F+          L  I L+      +  ++      + +   +L   ++   L
Sbjct: 365 FALIPSNFLTLYAMQIGSGLEMILLSFALAARFNELKRQREAALQLNEQVLAKRVTERTL 424

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
             L  +  R+S+L+  D L+GL N +A    L          +E L+++  D+D FK IN
Sbjct: 425 A-LEQANQRLSELALQDPLTGLANRTALQQHLDQALARSLRRDELLAVMLIDLDGFKPIN 483

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKI 202
           D  GH  GD+V+A ++ +L           RLGG+EF        S ++A  LA  L + 
Sbjct: 484 DQHGHRFGDQVLAEIAGRLRQYIRDADLPARLGGDEFVVICENVQSAEDAQDLAKRLLEG 543

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++          ++ +  S GIA     +  +T+I  AD A+Y AK  GRNRV   +
Sbjct: 544 LDT--PMYLEDRAVRVGASIGIALTRGGDDATTLIRLADAAMYRAKAEGRNRVQLAT 598


>gi|319782928|ref|YP_004142404.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317168816|gb|ADV12354.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 263

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/255 (27%), Positives = 107/255 (41%), Gaps = 33/255 (12%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFY--------GLEYILVENLSLVIISITISLLLGY-- 84
           F +FI  ++    + L   GL   +        GL+ ++  N  L    + ++  L +  
Sbjct: 10  FFVFIFVILAAGLVTLHAYGLLQSFADELHTASGLDKVIYLNKLLFATGVLLATALFFGI 69

Query: 85  ------ISGSILKE---------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-- 127
                 I     +E         L      +   +  D L+G+ N   F  +L  Y E  
Sbjct: 70  FFIYPLIRKQATEEGKLRAMTVSLSARSETLEHAALTDGLTGMQNRRYFDDALKEYLEEF 129

Query: 128 -----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                 + ++  D+D+FKQ+ND  GH VGD+V+  ++  L  +      V RLGGEEFA 
Sbjct: 130 RRIEKPVGLMILDLDHFKQVNDTHGHDVGDEVLKAVASCLKDMTRYHDVVARLGGEEFAV 189

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
                  +     A  +RK I N  + +S    + IT S G+A    KE       RAD+
Sbjct: 190 VTPNMDAELLGKFAERIRKAIANMSV-LSGNVRLKITTSVGLAVWDRKETAEEFYRRADR 248

Query: 243 ALYVAKKSGRNRVVC 257
            LY AK+ GRNRV  
Sbjct: 249 QLYEAKRQGRNRVCA 263


>gi|317051641|ref|YP_004112757.1| diguanylate cyclase [Desulfurispirillum indicum S5]
 gi|316946725|gb|ADU66201.1| diguanylate cyclase [Desulfurispirillum indicum S5]
          Length = 284

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 77/174 (44%), Gaps = 10/174 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L  L  +Y+   + + +D L+ L N       L          +  LS++  DID+FK +
Sbjct: 112 LLRLRQAYHTTRREATMDALTRLANRRKINEVLERETIYSNIGHTPLSLILLDIDHFKHV 171

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH VGDKV+  L+  L         VGR GGEEF     G     A  +A  +R  
Sbjct: 172 NDTYGHGVGDKVLIALAGLLRHNTRDNDVVGRWGGEEFIIILPGCPIGTATEIAERIRTA 231

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           I        + P   +T S G+      E I  ++ R D  +Y  K  GRN+VV
Sbjct: 232 IAEFPFADITHP---VTASIGVTGYISGESIEDLMGRVDHGMYSGKTGGRNQVV 282


>gi|320323580|gb|EFW79664.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320328212|gb|EFW84216.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330881948|gb|EGH16097.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 527

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 92/205 (44%), Gaps = 20/205 (9%)

Query: 81  LLGYISGSILKE---------LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124
           L+G+I   I  E         L      +  ++  D L+GL N   F             
Sbjct: 301 LIGHIHSRIRAEDQLLDSQAALIQLNQHLEFIASEDKLTGLANRRRFDQFLEVEFKRARR 360

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAA 183
               LS++  D D+FK+ ND++GH  GD+ +  L+  +      P     R GGEE A  
Sbjct: 361 ERSLLSLILIDADHFKRYNDHYGHLAGDECLVALARVVEQCIRRPGDVAARYGGEEIAVV 420

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRA 240
             G+ E  A  +A ++ + I + QI   + P   +T+S G+A     +      ++I  A
Sbjct: 421 LPGTDESSARQVAENILQAIRDEQIEHPASPFGIVTVSLGVATFVGTDRQLDQRSLIELA 480

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D+ALY AK  GRNRV   S+I  +T
Sbjct: 481 DRALYAAKSQGRNRVNVASEIATST 505


>gi|319425658|gb|ADV53732.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella putrefaciens 200]
          Length = 1018

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +   + + I + +  D L+GL N    +  LG          +  +++F D+DYFK
Sbjct: 565 SDITDKKQNEHLIWKQANYDTLTGLPNRRMLLEYLGAEIKNADRNQDHFALLFLDLDYFK 624

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           ++ND  GH +GD ++   + +L         V RLGG+EF       +  +    +A  +
Sbjct: 625 EVNDTLGHEMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSAMADHKGIERVAEHI 684

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            + I   +  +    + +IT S GI         I  ++  ADQA+Y AK  GRNR   F
Sbjct: 685 LRRIA--EPYLLGEETAYITASIGITLYPDDATSIEGLLKHADQAMYAAKDQGRNRFNYF 742

Query: 259 SDIENNTC 266
           +       
Sbjct: 743 TPSMQEYA 750


>gi|153832405|ref|ZP_01985072.1| ggdef domain containing protein [Vibrio harveyi HY01]
 gi|148871434|gb|EDL70297.1| ggdef domain containing protein [Vibrio harveyi HY01]
          Length = 320

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 63/177 (35%), Positives = 92/177 (51%), Gaps = 9/177 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDN 145
           L  +   +S++SR D L+GL N + +  SL     +L       S+V FDID+FK++ND 
Sbjct: 145 LRETNQHLSEISRKDGLTGLFNRAYWEQSLKEEFAQLKVIEGASSLVIFDIDHFKKVNDT 204

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD+VI   S  L     +    GR GGEEF      +++++A   A  LRK IE 
Sbjct: 205 YGHHTGDEVIRRTSSLLRKTARSSDICGRFGGEEFTVLLPHTNQEQANYFAERLRKRIEQ 264

Query: 206 SQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             + +     I+ TIS G+ E   + E  +  +  AD ALY AK+SGRN+     D 
Sbjct: 265 EIVKVEE-FLINYTISIGVCEYKSYFESHTQWLKSADAALYRAKESGRNQTCNHEDA 320


>gi|119468104|ref|ZP_01611230.1| putative orphan protein ; putative sensory-box domain
           [Alteromonadales bacterium TW-7]
 gi|119448097|gb|EAW29361.1| putative orphan protein ; putative sensory-box domain
           [Alteromonadales bacterium TW-7]
          Length = 838

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 12/187 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQ 141
           + E   +  ++  L+  D L+GL N   F   L    +          ++++ D+D+FK 
Sbjct: 392 IHERKQAELQLRHLALHDPLTGLHNRYHFDQELSRICKPKHTHSDVEHALIYIDLDHFKI 451

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD V+  ++            V R+GG+EFA      +  +A ++A  +  
Sbjct: 452 INDSQGHHQGDLVLKDVAQLFKDNIEKEHLVCRIGGDEFAVILKNMNLLDAHLIAEGVCS 511

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS- 259
            IE      S+  S  I+ S G+ +   +    +  + +AD ALY+AK  GRN V C+S 
Sbjct: 512 AIEQHTFK-SNEQSYTISCSIGLTQITVNNNDPNECLKQADIALYIAKNLGRNLVHCYSK 570

Query: 260 -DIENNT 265
            D  NNT
Sbjct: 571 EDAHNNT 577


>gi|309790983|ref|ZP_07685523.1| diguanylate cyclase [Oscillochloris trichoides DG6]
 gi|308226956|gb|EFO80644.1| diguanylate cyclase [Oscillochloris trichoides DG6]
          Length = 382

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 65/250 (26%), Positives = 120/250 (48%), Gaps = 23/250 (9%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS-------LVIISITIS 79
            ++  S+ F ++      +  + L+ +  +  + L  I     S       ++ + +  S
Sbjct: 122 LLVICSLAFHLYSGRWGILVGVGLYLLAFSVAFTLVLIDQRQGSGDPNGIFVIQMYVAAS 181

Query: 80  LLLGYIS-----GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------- 127
           +LLG++         ++ L + YN + +++  D L+ L N S    +L            
Sbjct: 182 MLLGFLFILARYRDHIQRLQVEYNLLERVAFTDMLTQLPNRSMGHQTLQRQIALCQRNAM 241

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            LS+  +DID+FK INDN+GH VGD+V+  ++ +LV        + R GGEEF      +
Sbjct: 242 PLSVSIWDIDHFKLINDNYGHDVGDQVLRAIATRLVEELRLSDMLVRWGGEEFLLILPNT 301

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
           +   A ++   LR+++    I      ++ +T S G++   H + +  ++ RAD A+Y+A
Sbjct: 302 TLSSALLVIERLRQVLSKQPII----NNLSVTASFGVSCYHHSDTLEQLLQRADAAMYLA 357

Query: 248 KKSGRNRVVC 257
           K  GRNRVV 
Sbjct: 358 KAQGRNRVVA 367


>gi|239947824|ref|ZP_04699577.1| regulatory component of sensory transduction system [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239922100|gb|EER22124.1| regulatory component of sensory transduction system [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 450

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 89/191 (46%), Gaps = 13/191 (6%)

Query: 79  SLLLGYISGSILKELFISYNR--ISQ---LSRIDCLSGLLNHSAFISSLGSYNEK----- 128
           S LL  I   + ++ +    R  + Q   L+  D L+GL N   F   L    EK     
Sbjct: 258 SELLARIRTQLRRKQYQDNLRNDLEQSVNLAAKDGLTGLFNRRYFDIHLKQMIEKANKES 317

Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             L ++  DID FK +ND +GH  GDKV+  +S  L         + R GGEEF      
Sbjct: 318 IKLYLLMCDIDNFKHVNDTYGHQAGDKVLTIVSRILKNTLRITDLIARFGGEEFIILLTD 377

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALY 245
               +A   A  +R  IE    +I      +  TIS G+ E   +E I + I RAD+A+Y
Sbjct: 378 IDISKAIETAERVRVKIECMDFHIEDQIEPLKKTISIGVTEYKKEESIESFIERADKAMY 437

Query: 246 VAKKSGRNRVV 256
            AK +G+N+VV
Sbjct: 438 EAKTTGKNKVV 448


>gi|254457933|ref|ZP_05071360.1| ggdef/pas/pac-domain containing protein [Campylobacterales
           bacterium GD 1]
 gi|207085326|gb|EDZ62611.1| ggdef/pas/pac-domain containing protein [Campylobacterales
           bacterium GD 1]
          Length = 464

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/170 (34%), Positives = 85/170 (50%), Gaps = 10/170 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGH 148
             ++   +  D L+ L N   F S L     ++        S++ FD+D FK IND  GH
Sbjct: 295 QEQLETQATTDYLTELHNRRYFTSRLEEEVARIKRDKKVTSSLLMFDLDKFKLINDTLGH 354

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD V+   +D L          GR+GGEEFA     ++ +EA +LAN +R+ + N + 
Sbjct: 355 LMGDVVLKIFADILKKNLRKSDIAGRIGGEEFAMILPSTNIREAKVLANRIREEVSNKK- 413

Query: 209 NISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I  G SI+ T+S G+ A         +   RAD ALY+AK  GRNRV  
Sbjct: 414 TIIDGNSINFTVSIGLTAIASDDANSDSAFARADTALYMAKGKGRNRVEV 463


>gi|152991498|ref|YP_001357220.1| hypothetical protein NIS_1758 [Nitratiruptor sp. SB155-2]
 gi|151423359|dbj|BAF70863.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 793

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 85/187 (45%), Gaps = 12/187 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + EL      I +L+  D L+ L N  +F+ +L          +   +++F D+D FK+
Sbjct: 355 DITELAKKQETIQKLAFYDPLTKLANRVSFLQTLDEFIALGKRESFPFALLFIDLDNFKE 414

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           IND  GH  GDK++     +L  +        RLGG+EF   A G SS  +A  LA  L+
Sbjct: 415 INDTLGHDTGDKLLQAFVKRLKSLLREEDIAARLGGDEFVVLAPGISSPSKALELACRLQ 474

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
              +  Q  +     I + +S GIA         + ++  AD A+Y AK+  +NR V F 
Sbjct: 475 NAFQ--QPLMVDDRPITVQMSIGIALFPQDAKNANELLKAADIAMYKAKEK-KNRCVLFQ 531

Query: 260 DIENNTC 266
           +      
Sbjct: 532 ENMQQEA 538


>gi|71907174|ref|YP_284761.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71846795|gb|AAZ46291.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 1006

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 98/213 (46%), Gaps = 12/213 (5%)

Query: 64  ILVENLSLVIISITISLLLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAF---- 118
           I  + +S+ +I     ++  +++  + +     +  R+  ++  D L+GLLN  +     
Sbjct: 538 IYPKWMSISVIRGEDGMIRYHVAHFTDVSSERAAEERLHHMAHHDVLTGLLNRLSLKGRL 597

Query: 119 ---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
              +++      +++++F D+D FK IND  GH VGD+++  ++++L         V R+
Sbjct: 598 DQALAAARRDGSRVAVLFVDLDRFKVINDTLGHHVGDELLIEVANRLRDGVRDSDVVARV 657

Query: 176 GGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF     G     A A++A  L  +    Q     G  ++ T S GIA      E  
Sbjct: 658 GGDEFVIMLSGVEHTSAVAMVAEKL--VFSVGQSYQIGGYDLYSTPSIGIAIYPTDGEDG 715

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             ++  AD A+Y AK +GRN    F    N   
Sbjct: 716 DILMKNADAAMYHAKMAGRNNFQFFDAKMNEAA 748


>gi|88861176|ref|ZP_01135809.1| hypothetical protein PTD2_00242 [Pseudoalteromonas tunicata D2]
 gi|88816769|gb|EAR26591.1| hypothetical protein PTD2_00242 [Pseudoalteromonas tunicata D2]
          Length = 603

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 78/263 (29%), Positives = 123/263 (46%), Gaps = 33/263 (12%)

Query: 28  MIYFSIFF--SIFIATVIFIANIFLFYIGLTPF-------YGLEYILVENLSLVIISITI 78
           ++  S  F  S FI++++    + L +I               E  + +NL L  I I  
Sbjct: 339 LVSMSTLFMNSFFISSMVLSYLLILQFIDRRDLKIQRQQALLAEAKIKDNLQLETIKIQQ 398

Query: 79  SLLLGYIS---------GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------- 122
            L     S            L+EL      + + + +D L+G+ N S F   L       
Sbjct: 399 ELEEELESRIQEHTFELQITLQELEEKNRELEEKNTLDSLTGIRNRSYFDKKLTMEFRRS 458

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFA 181
                 L+++  DID+FK+IND FGH  GD  I F++  +   +      V R GGEEFA
Sbjct: 459 HREQTPLAVMMLDIDFFKKINDTFGHLAGDDAIRFVAHTIQTSLKRPSDEVCRYGGEEFA 518

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG----IAERCHKEPISTII 237
                +  + A ++A  +R  I  +Q++ ++G  I++TIS G    IA+R H+    T +
Sbjct: 519 VILPNTDTEGALLVAEAIRAQISEAQVHTTAGI-INMTISVGLFSDIAQRNHEPNQYTAL 577

Query: 238 YRADQALYVAKKSGRNRVVCFSD 260
             AD+ALY AK +GRN+VV + D
Sbjct: 578 --ADKALYQAKHAGRNQVVFYDD 598


>gi|86749290|ref|YP_485786.1| putative GAF sensor protein [Rhodopseudomonas palustris HaA2]
 gi|86572318|gb|ABD06875.1| diguanylate cyclase with GAF sensor [Rhodopseudomonas palustris
           HaA2]
          Length = 812

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 58/188 (30%), Positives = 86/188 (45%), Gaps = 13/188 (6%)

Query: 83  GYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFF 134
           G++S    + E       I  L+  D L+GL N +AF          L    E  ++   
Sbjct: 624 GWVSTHEDITEQQRREAEILFLAHHDLLTGLANRAAFDETVETAVARLQRNGEPFTLFML 683

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ--EA 192
           D+D FKQ+ND FGHP GD+++   + +L         + RLGG+EFA    G+ ++   A
Sbjct: 684 DLDRFKQVNDTFGHPAGDQLLREAAQRLRSSVRKTDILARLGGDEFAIVQFGAGDRFKAA 743

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSG 251
             LA  + ++I  SQ     G  + + IS GIA         + ++  AD ALY  K  G
Sbjct: 744 KGLAERIVRLI--SQPFDLGGAQVSVGISIGIAIAPHAATDAAALLKMADVALYAVKSEG 801

Query: 252 RNRVVCFS 259
           RN    F 
Sbjct: 802 RNGFRFFE 809


>gi|330891181|gb|EGH23842.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 734

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           + +  L  +  R+   +  D L+GL N + F S L S            +++F D+D FK
Sbjct: 373 ADISSLKHAQARLDYQAHHDPLTGLPNRTLFESRLQSALLHSEESGSLGAVLFLDLDRFK 432

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND+ GHPVGD ++  ++ +L         V RLGG+EF     G     +A  +AN L
Sbjct: 433 HINDSLGHPVGDLLLKGIAHRLKETLRDVDTVARLGGDEFIVLLPGLLQPSDAQAIANKL 492

Query: 200 RKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 +    +    ++I+ S G          ++T++  AD A+Y +K  GRNRV  +
Sbjct: 493 LACF--NTPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKAKGRNRVESY 550

Query: 259 S 259
           +
Sbjct: 551 T 551


>gi|218249132|ref|YP_002374503.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Cyanothece sp. PCC 8801]
 gi|218169610|gb|ACK68347.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8801]
          Length = 1143

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 12/190 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDY 138
            S + E   +  ++   +  D L+ L N   F+  L    E+         +++F D+D 
Sbjct: 692 NSDITERKQAEEQLQYNATHDTLTQLPNRLLFMDRLEHALERRRRYSDPLFAVLFLDLDE 751

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAN 197
           FK IND+ GH +GD+++  ++ +L         + RLGG+EF          ++A  +A 
Sbjct: 752 FKVINDSLGHALGDELLREIARRLQKSLRADDTLARLGGDEFTILLEEIHDVKDAIKIAE 811

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            + K  + ++     G  I    S GIA    + E  S I+  AD A+Y AK  G+    
Sbjct: 812 RIHK--DLTRPFNLEGQEIFTNTSIGIALSNGEYEAASEILRDADTAMYRAKAGGKACYA 869

Query: 257 CFSDIENNTC 266
            F    + + 
Sbjct: 870 IFDQQMHASA 879


>gi|16765323|ref|NP_460938.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167993561|ref|ZP_02574655.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|20140631|sp|Q8ZNT5|YEDQ_SALTY RecName: Full=Cellulose synthesis regulatory protein
 gi|16420521|gb|AAL20897.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|205328369|gb|EDZ15133.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|267993975|gb|ACY88860.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158500|emb|CBW18010.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912976|dbj|BAJ36950.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224631|gb|EFX49694.1| hypothetical protein SEE_03090 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323130265|gb|ADX17695.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988875|gb|AEF07858.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 570

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 101/203 (49%), Gaps = 11/203 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+    T  LL+ + +   ++K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWGLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 +  S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
            AD+ LY AK+SGRNR+ C SD 
Sbjct: 542 LADKRLYYAKQSGRNRI-CASDA 563


>gi|154247268|ref|YP_001418226.1| diguanylate cyclase with PAS/PAC sensor [Xanthobacter autotrophicus
           Py2]
 gi|154161353|gb|ABS68569.1| diguanylate cyclase with PAS/PAC sensor [Xanthobacter autotrophicus
           Py2]
          Length = 607

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 6/171 (3%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQIN 143
            S + E   +  RI+ L+  D L+ L N   F   L +     E  ++++ D+D FK IN
Sbjct: 425 QSEIAERVRAQERIANLAEHDVLTALPNRRRFERRLAAAVEQGEPFAVLYLDLDGFKAIN 484

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKI 202
           D  GH  GD ++  ++++L         + RLGG+EFA     + +  E   +A  +   
Sbjct: 485 DTHGHDTGDGLLQNVAERLRACLREDDTLARLGGDEFAVILASARTADEVRPVAERIIDH 544

Query: 203 IENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGR 252
           +  +       P + I++S GIA           ++  AD+A+Y AK+  R
Sbjct: 545 V-GAPYGADGDPELKISVSVGIALYPQAGRTPRALLQAADRAMYEAKRGSR 594


>gi|329924628|ref|ZP_08279643.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
 gi|328940462|gb|EGG36784.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
          Length = 331

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 12/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG----SYNE---KLSIVFFDIDYFKQIN 143
            EL      + +LS  D L+GL N   F   L      YN     LS+   DID+FK++N
Sbjct: 152 TELMEINAVLLELSNTDKLTGLKNRRFFQEKLEEQLMQYNHNRIPLSLFIIDIDHFKRVN 211

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD+V+  ++  L         V R GGEEF      +  ++A   A  LR+ +
Sbjct: 212 DTWGHGYGDEVLFNVATILKTHAIEGETVARYGGEEFVMILPETDAEKAKAGAERLRRAV 271

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           ++      S  +  +TIS GI         +T++ +AD+ALY +K++GRN+V  + D+
Sbjct: 272 QDF-----SWKTGSMTISIGIITATPDANEATLLQKADEALYASKQNGRNQVTHYEDL 324


>gi|332160521|ref|YP_004297098.1| hypothetical protein YE105_C0899 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318607010|emb|CBY28508.1| GGDEF family protein [Yersinia enterocolitica subsp. palearctica
           Y11]
 gi|325664751|gb|ADZ41395.1| hypothetical protein YE105_C0899 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330863664|emb|CBX73770.1| uncharacterized protein ydaM [Yersinia enterocolitica W22703]
          Length = 414

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 83/175 (47%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQ 141
            + E       +   +  D L+ L N   F        +    Y +  S++  D+D+FK 
Sbjct: 242 DITEQKRLEQALEYAALKDPLTDLGNRRQFFPLVEHAHAQSQRYGQNFSLILLDVDHFKN 301

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH  GD+V+ FL+  L  +      V R GGEEF      ++ + A  LA  +R+
Sbjct: 302 INDQLGHHKGDEVLIFLARTLESIIRECDIVFRWGGEEFTILLPSTNLKGALQLAESIRE 361

Query: 202 IIENS-QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I+   Q N+       +T+S G+A+    E   ++  R D+ALY AK SGRNRV
Sbjct: 362 TIQMICQPNLP-----QLTVSIGVAQHQVGEDTDSLFKRMDEALYRAKASGRNRV 411


>gi|253699121|ref|YP_003020310.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. M21]
 gi|251773971|gb|ACT16552.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. M21]
          Length = 853

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 94/197 (47%), Gaps = 15/197 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEK 128
           ++I+ L G+I    + ++  +   I  L+  D L+ L N S     +          +  
Sbjct: 390 LSITRLDGFIL--DVTDIKRAEENIFFLAHHDPLTKLPNRSTLYERMEQVICAAQKSSRN 447

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           ++++F DID FKQIND+ GH VGD+++  ++ +L     +   V RLGG+EF        
Sbjct: 448 VALLFLDIDGFKQINDSMGHDVGDRLLQSVAKRLSDCTRSCDVVSRLGGDEFVVMLWDCG 507

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247
           E E  ++A      + N+   +  G ++ +T S GI+          T++  AD A+Y A
Sbjct: 508 EAETTVVAEK----VINAGFPVL-GSNVTVTPSIGISIFPDDGRDYLTLLKHADIAMYHA 562

Query: 248 KKSGRNRVVCFSDIENN 264
           KKSG N    F+   N 
Sbjct: 563 KKSGGNNFQFFTHKLNE 579


>gi|307720988|ref|YP_003892128.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica
           DSM 16294]
 gi|306979081|gb|ADN09116.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica
           DSM 16294]
          Length = 520

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 82/179 (45%), Gaps = 11/179 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDY 138
           +G  + E  +   ++ +L+ ID L+G+ N   F             Y   LS++ FD+D 
Sbjct: 344 TGKDVTEQMLLEEKLRELAAIDKLTGISNRLRFDEVLQFSIDRAKRYKVNLSVILFDVDK 403

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++ND +GH  GD V+  ++            + R GG+EF          EA IL   
Sbjct: 404 FKKVNDTYGHLCGDDVLKMIAKIGHDSIRKSDLIARWGGDEFIILQSDIPSDEAQILVER 463

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           LR  IE+            +T+S G+      +   ++I RAD ALY AK+ GRNRV  
Sbjct: 464 LRHNIESYNFKDVG----KVTVSFGVTHFKEDDTKESLIKRADDALYEAKEHGRNRVEV 518


>gi|257062218|ref|YP_003140106.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8802]
 gi|256592384|gb|ACV03271.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8802]
          Length = 1143

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 12/190 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDY 138
            S + E   +  ++   +  D L+ L N   F+  L    E+         +++F D+D 
Sbjct: 692 NSDITERKQAEEQLQYNATHDTLTQLPNRLLFMDRLEHALERRRRYSDPLFAVLFLDLDE 751

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAN 197
           FK IND+ GH +GD+++  ++ +L         + RLGG+EF          ++A  +A 
Sbjct: 752 FKVINDSLGHALGDELLREIARRLQKSLRADDTLARLGGDEFTILLEEIHDVKDAIKIAE 811

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            + K  + ++     G  I    S GIA    + E  S I+  AD A+Y AK  G+    
Sbjct: 812 RIHK--DLTRPFNLEGQEIFTNTSIGIALSNGEYEAASEILRDADTAMYRAKAGGKACYA 869

Query: 257 CFSDIENNTC 266
            F    + + 
Sbjct: 870 IFDQQMHASA 879


>gi|307151595|ref|YP_003886979.1| PAS/PAC sensors-containing diguanylate cyclase/phosphodiesterase
            [Cyanothece sp. PCC 7822]
 gi|306981823|gb|ADN13704.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Cyanothece sp. PCC 7822]
          Length = 1409

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 83/188 (44%), Gaps = 12/188 (6%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFK 140
             + E   +  ++      D L+GL N +  +  +    ++         +I+F D+D FK
Sbjct: 966  DITERKQAEEQLRHSVLHDGLTGLPNRTLLLDRVEQAIKRKQQQPNYLFAILFIDLDRFK 1025

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
             +ND+ GH VGD+++  ++D+L         V R GG+EF       +   +A  +A  +
Sbjct: 1026 VVNDSLGHLVGDQLLKTIADKLQRCVRPTDTVARFGGDEFVILLEDLTIWTDATKMAQRI 1085

Query: 200  RKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +  E+S            + S GI      ++  S ++  AD A+Y +K++GR R   F
Sbjct: 1086 TEEFESS--FTLQEQEYFTSASIGITFCSSPEQTPSELVRNADIAMYRSKEAGRARYTMF 1143

Query: 259  SDIENNTC 266
              I +   
Sbjct: 1144 DPIMHTQA 1151


>gi|316940010|gb|ADU74044.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum DSM
           1313]
          Length = 559

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 9/177 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           I  E    Y R+ +++ ID L+G+ N   F   L          N  LS+   DID+FK+
Sbjct: 382 IAMENVELYQRMHEMATIDSLTGIYNRLYFQERLREEFANAKKENYDLSLAIMDIDHFKR 441

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            ND FGH  GDKV+  ++  +     +   + R GGEEF      +S +EA      LR 
Sbjct: 442 FNDTFGHLFGDKVLKHIAHLMKKSLRSGDIIARYGGEEFVILLPRTSVKEAYDKVERLRN 501

Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
           I+  + I         +T+S G++         S ++  AD ALY AK+SGRN V  
Sbjct: 502 IVAKTTIK-DELVEASVTVSFGVSSYPEFANTESELLKTADNALYDAKESGRNCVRI 557


>gi|78047166|ref|YP_363341.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria str.
            85-10]
 gi|78035596|emb|CAJ23266.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria str.
            85-10]
          Length = 1065

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 8/176 (4%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
            +L  L I  +   + +  D L+GL N   F  +L             L +   DID+FK+
Sbjct: 890  LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSGRPLVLAILDIDHFKR 949

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            IND++ H  GD V+  +   L           RLGGEEFA     ++  EA  L   +R 
Sbjct: 950  INDHYSHASGDAVLHEVGVLLTAAARASDLPARLGGEEFALLLADTTLDEAQALCLRIRA 1009

Query: 202  IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +  +++ N +S   + +T SAG+A     +  S+++ RAD ALY AK +GR+R+  
Sbjct: 1010 LF-HARHNWASVEGLQVTFSAGVAALRDDDTGSSLMQRADHALYEAKSAGRDRICV 1064


>gi|298290752|ref|YP_003692691.1| diguanylate cyclase with PAS/PAC sensor [Starkeya novella DSM 506]
 gi|296927263|gb|ADH88072.1| diguanylate cyclase with PAS/PAC sensor [Starkeya novella DSM 506]
          Length = 483

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 12/182 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            + +EL  +  R+++LS +D L+ L N   F S L       G +   L+++  D+D FK
Sbjct: 271 QLERELIEANRRLTELSEMDPLTELPNRRKFDSVLTREIGRTGRHKPSLALMMIDVDGFK 330

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GH  GD+ +  +++ L          + R GGEEFA     + E +A ++A  +
Sbjct: 331 HYNDLYGHIEGDECLRKVAETLRHCARRTGDLITRYGGEEFAVILADTDENDAVMVATSM 390

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNRV 255
            + + + ++  +  P   +T+S GIA        +T    ++  AD+ALY AK++GRN +
Sbjct: 391 LRAVRDLRVAHAGSPYGIVTVSVGIAIHEAANHDTTAPPVLVASADRALYAAKQAGRNCI 450

Query: 256 VC 257
           + 
Sbjct: 451 LV 452


>gi|120599648|ref|YP_964222.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sp. W3-18-1]
 gi|120559741|gb|ABM25668.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. W3-18-1]
          Length = 1018

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +   + + I + +  D L+GL N    +  LG          +  +++F D+DYFK
Sbjct: 565 SDITDKKQNEHLIWKQANYDTLTGLPNRRMLLEYLGAEIKNADRNQDHFALLFLDLDYFK 624

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           ++ND  GH +GD ++   + +L         V RLGG+EF       +  +    +A  +
Sbjct: 625 EVNDTLGHEMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSAMADHKGIERVAEHI 684

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            + I   +  +    + +IT S GI         I  ++  ADQA+Y AK  GRNR   F
Sbjct: 685 LRRIA--EPYLLGEETAYITASIGITLYPDDATSIEGLLKHADQAMYAAKDQGRNRFNYF 742

Query: 259 SDIENNTC 266
           +       
Sbjct: 743 TPSMQEYA 750


>gi|114046737|ref|YP_737287.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-7]
 gi|113888179|gb|ABI42230.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-7]
          Length = 878

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 11/207 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  +N+++  I   +  +  +++  S +     S  +++ L+  D L+ L N    +  L
Sbjct: 411 IFPQNITISTIYDELGDVRYFVAVFSDISAQKQSEAQLAHLAYFDPLTHLPNRMKLMMQL 470

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     N +L+ VF D+D FK IND+FGH +GD+++  L+ +L         + R+
Sbjct: 471 KQELRHAKRLNAQLATVFIDVDLFKHINDSFGHSIGDEMLVELAKRLRCRLQEQDVLSRI 530

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF A   G  S ++AA   N LR++ E     +S+G  + +T S G++         
Sbjct: 531 GGDEFVALISGIQSHEDAAAAINQLRQVFEQ-PFVVSTGDHLRLTASMGVSIYPNDGSNA 589

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSD 260
            T++  AD A+Y AK  GRN    +++
Sbjct: 590 DTLLRNADAAMYRAKSEGRNNFAFYTE 616


>gi|257093489|ref|YP_003167130.1| response regulator receiver modulated diguanylate cyclase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257046013|gb|ACV35201.1| response regulator receiver modulated diguanylate cyclase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 639

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 63/212 (29%), Positives = 98/212 (46%), Gaps = 22/212 (10%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELF----------ISYNRISQLSRIDCLSGLL 113
           + ++ L + + + T  LLL      I +E            +++ R+ + +  D L+ L 
Sbjct: 430 VTLQTLRVRLNTATRMLLL---RDEIQRERRGIMRSTDQFAVAHKRLLREALTDTLTQLP 486

Query: 114 NHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N    +  L S           ++ +  DID+FK+IND  GHP GD V+  L+D L    
Sbjct: 487 NRRHGLDFLASEWAFAQSNALPMACLLLDIDHFKRINDTLGHPAGDAVLQQLADLLKRAS 546

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA- 225
                V R GGEEFAA    ++ Q A  +A  +R +++     +    SI +T+S G+A 
Sbjct: 547 RPEDLVFRYGGEEFAAVLPNANAQTAVQIAERIRGLVQKYDF-LWQRRSIPLTVSIGVAI 605

Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                +    +I  AD ALY AK  GRNRV  
Sbjct: 606 LSSTGKDSQALIEAADAALYQAKNGGRNRVTV 637


>gi|163849939|ref|YP_001637982.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163661544|gb|ABY28911.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 574

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 87/185 (47%), Gaps = 9/185 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136
           + +   ++ L    + +  L+  D L+GLLN  AF       +S    Y   + ++  DI
Sbjct: 381 HAAEDRVRRLGADLHAMQVLADTDALTGLLNRRAFLPLANDAMSYFMRYRRSICVLMIDI 440

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK++ND +GH  GD+VI  +   +         V R GGEEF      +  Q A I A
Sbjct: 441 DHFKRVNDLYGHAAGDEVIRQVGRIIRDAIRATDKVARFGGEEFVVLLRETDLQGAVIFA 500

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +R+ +  +      G  +  TIS G+A      + I   I RAD+ALY AK  GRN V
Sbjct: 501 ERIRQTVAGTVFE-PEGQCLRATISIGMAGAEVTDDDIDHTIERADRALYAAKSGGRNCV 559

Query: 256 VCFSD 260
             F D
Sbjct: 560 RTFED 564


>gi|86607232|ref|YP_475995.1| response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86555774|gb|ABD00732.1| response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 332

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/190 (30%), Positives = 86/190 (45%), Gaps = 13/190 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----------GSYNEKLS 130
           L        ++L      +  LS  D L+G LN  A   +L            +    L 
Sbjct: 132 LTQALAQANRQLRARNELLESLSLTDPLTGALNRRALDQALPHLLKQVGPREQARYRYLC 191

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+DYFKQ+ND +GH +GD V+  +  +L         + R GGEEF     G +  
Sbjct: 192 LLMMDVDYFKQVNDTYGHYIGDCVLQAIVGRLHNQLRPSSLLYRYGGEEFVCVTPGLNPA 251

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAK 248
                A  LR+ I +  I ++   S+ +TIS G        P+     + +AD+ALY AK
Sbjct: 252 RCHRYAESLRRAIASRPIEVAPQRSLPVTISIGGIVLSEDGPLAPEAALQKADEALYQAK 311

Query: 249 KSGRNRVVCF 258
           ++GRNRV  F
Sbjct: 312 QAGRNRVHLF 321


>gi|114049083|ref|YP_739633.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-7]
 gi|113890525|gb|ABI44576.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-7]
          Length = 1466

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 13/205 (6%)

Query: 72   VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GS 124
            V+ S + S L   I  S + E   +   + +L+  D L+GL N S F S L         
Sbjct: 1003 VMQSASDSSLHYVIVFSDITERKRTEADLRRLANYDVLTGLPNRSLFSSRLLQSIQMAQQ 1062

Query: 125  YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
              EKL+++F D+D FK +ND++GH +GD ++   S++L    G+   + R GG+EF    
Sbjct: 1063 SGEKLALLFLDLDRFKHVNDSYGHSMGDALLVEASNRLQSCIGSEHLLCRFGGDEFVILL 1122

Query: 185  LGS-SEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRAD 241
              + +  E   +A  L  +I+   ++    G   +I+ S GI+            I  AD
Sbjct: 1123 RNANNLNEINHIAERLLAQIVAPFKLF---GREFYISTSIGISIWPDDAVQPEAFIKNAD 1179

Query: 242  QALYVAKKSGRNRVVCFSDIENNTC 266
             A+Y AK+ GR     +S   N   
Sbjct: 1180 LAMYHAKEEGRGNFKYYSSERNAQA 1204


>gi|107100318|ref|ZP_01364236.1| hypothetical protein PaerPA_01001343 [Pseudomonas aeruginosa PACS2]
 gi|218893172|ref|YP_002442041.1| hypothetical protein PLES_44571 [Pseudomonas aeruginosa LESB58]
 gi|218773400|emb|CAW29212.1| hypothetical protein PLES_44571 [Pseudomonas aeruginosa LESB58]
          Length = 818

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 11/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            +        R+S  +  D L+GL N   F       +  L   + + +++F D+D FK 
Sbjct: 359 DMTRERQYMARLSWQATHDALTGLTNRREFEYRLQIALERLERNSGRHALMFLDLDQFKL 418

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD+++  +   L         + RLGG+EF         ++A  +A+ LRK
Sbjct: 419 VNDTCGHAAGDELLRQVCTLLQQGLREGDTLARLGGDEFGILLENCPAEKAVEIADHLRK 478

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF-- 258
            I++     S G   + T+S G+         +   +  AD A Y+AK+ GRNRV  F  
Sbjct: 479 TIQDLHFTWS-GQPFNCTVSVGLVHLLPGISTLEEALRSADMACYMAKEKGRNRVQVFHQ 537

Query: 259 SDIE 262
            D+E
Sbjct: 538 DDVE 541


>gi|74318652|ref|YP_316392.1| PAS/PAC sensor-containing diguanylate cyclase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74058147|gb|AAZ98587.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 843

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 10/182 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDI 136
            +    + +L  +   + +L+ +D L+G+ N                     ++ V  DI
Sbjct: 648 LVVERDIDDLKRAQEALEELTLLDPLTGVANRRFLERFVGREWMREARQRLPIAAVMVDI 707

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           D+FK  ND++GH  GD  +  +S  L   +      + R GGEEF      S    A  +
Sbjct: 708 DHFKDYNDHYGHAQGDACLRTVSQTLRGALHRPADILVRYGGEEFIVLLPESDLAAAREI 767

Query: 196 ANDLRKIIENSQINISSGP-SIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRN 253
           A  LR+ +E   +   + P    +TIS G+ A + H+     ++  AD ALY AKK GRN
Sbjct: 768 AERLRQAVEALALPHPTSPIGDRVTISLGVAAVQAHEGEFDQLLIAADAALYRAKKKGRN 827

Query: 254 RV 255
           RV
Sbjct: 828 RV 829


>gi|15596058|ref|NP_249552.1| hypothetical protein PA0861 [Pseudomonas aeruginosa PAO1]
 gi|9946759|gb|AAG04250.1|AE004521_1 hypothetical protein PA0861 [Pseudomonas aeruginosa PAO1]
          Length = 818

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 11/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            +        R+S  +  D L+GL N   F       +  L   + + +++F D+D FK 
Sbjct: 359 DMTRERQYMARLSWQATHDALTGLTNRREFEYRLQIALERLERNSGRHALMFLDLDQFKL 418

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD+++  +   L         + RLGG+EF         ++A  +A+ LRK
Sbjct: 419 VNDTCGHAAGDELLRQVCTLLQQGLREGDTLARLGGDEFGILLENCPAEKAVEIADHLRK 478

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF-- 258
            I++     S G   + T+S G+         +   +  AD A Y+AK+ GRNRV  F  
Sbjct: 479 TIQDLHFTWS-GQPFNCTVSVGLVHLLPGISTLEEALRSADMACYMAKEKGRNRVQVFHQ 537

Query: 259 SDIE 262
            D+E
Sbjct: 538 DDVE 541


>gi|113968775|ref|YP_732568.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-4]
 gi|113883459|gb|ABI37511.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-4]
          Length = 1494

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 13/205 (6%)

Query: 72   VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GS 124
            V+ S + S L   I  S + E   +   + +L+  D L+GL N S F S L         
Sbjct: 1031 VMQSASDSSLHYVIVFSDITERKRTEADLRRLANYDVLTGLPNRSLFSSRLLQSIQMAQQ 1090

Query: 125  YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
              EKL+++F D+D FK +ND++GH +GD ++   S++L    G+   + R GG+EF    
Sbjct: 1091 SGEKLALLFLDLDRFKHVNDSYGHSMGDALLVEASNRLQSCIGSEHLLCRFGGDEFVILL 1150

Query: 185  LGS-SEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRAD 241
              + +  E   +A  L  +I+   ++    G   +I+ S GI+            I  AD
Sbjct: 1151 RNANNLNEINHIAERLLAQIVAPFKLF---GREFYISTSIGISIWPDDAVQPEAFIKNAD 1207

Query: 242  QALYVAKKSGRNRVVCFSDIENNTC 266
             A+Y AK+ GR     +S   N   
Sbjct: 1208 LAMYHAKEEGRGNFKYYSSERNAQA 1232


>gi|330974466|gb|EGH74532.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 530

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 89/204 (43%), Gaps = 20/204 (9%)

Query: 82  LGYISGSILKE---------LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSY 125
           +G+I   I  E         L      +  ++  D L+GL N   F              
Sbjct: 302 IGHIHSRIRAEDQLLDSQAALIQLNQHLELIASEDKLTGLANRRRFDQFLEVEFKRARRE 361

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAA 184
              LS++  D D+FK+ ND++GH  GD+ +  L+  +   +        R GGEE A   
Sbjct: 362 RSPLSLILIDADHFKRYNDHYGHLAGDECLIALARVVEQFIRRPSDVAARYGGEEIAVVL 421

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRAD 241
            G+ E  A  +A  + + I + QI   + P   +TIS G+A     +       +I  AD
Sbjct: 422 PGTDESNARQVAEKILRAIRDEQIEHPASPFGIVTISLGVATFVGTDRQLDQRGLIELAD 481

Query: 242 QALYVAKKSGRNRVVCFSDIENNT 265
           +ALY AK  GRNRV   S+I  +T
Sbjct: 482 RALYAAKSQGRNRVNVASEIATST 505


>gi|326317166|ref|YP_004234838.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374002|gb|ADX46271.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 250

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 99/206 (48%), Gaps = 8/206 (3%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
               E +L E   LV  S    L +      + ++L     ++   +  D L+G+LN +A
Sbjct: 45  LAAYERLLRETRRLVRRSDRAELEM----NQLNQQLTELAEQLHYRATHDPLTGVLNRAA 100

Query: 118 FISSLGSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            I  +    E   ++++  DID+FK++ND+FGHPVGD+VI  + D L  V      +GR+
Sbjct: 101 IIEQVNGQFEAGSVALIVLDIDHFKKVNDSFGHPVGDRVIRGVVDCLKSVVPGSAQIGRV 160

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           GGEEF      +  Q    +A   R+ IE     +  G    +T S G++          
Sbjct: 161 GGEEFTVLLPDAHGQACERVAEAAREAIEGFDFGLPDGS--RVTASFGVSWLPGGCVFDD 218

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDI 261
               AD+ALY AK++GRNRVVC    
Sbjct: 219 AYGLADEALYDAKRAGRNRVVCADPA 244


>gi|89094058|ref|ZP_01167002.1| Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF)
           [Oceanospirillum sp. MED92]
 gi|89081732|gb|EAR60960.1| Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF)
           [Oceanospirillum sp. MED92]
          Length = 430

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 63/178 (35%), Positives = 88/178 (49%), Gaps = 9/178 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSA----FISSL---GSYNEKLSIVFFDIDYFKQ 141
            + +      ++ +L+  D L+ L N       F   L      ++ LS+ FFD DYFK 
Sbjct: 252 DITDYKQQEFKLQELAAYDELTKLRNRRECTRIFDKQLNFAQRNDQPLSLCFFDFDYFKS 311

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH  GD V+   +  L        ++ R GGEEF   +  ++ QE  +LA +LR 
Sbjct: 312 INDQYGHMAGDYVLKETAKFLTENLRVSDYLFRWGGEEFILISANTTRQEMQVLAENLRA 371

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + N  ++   G SIH+T S GIA    H E  S +I  AD ALY AK  GRN V  F
Sbjct: 372 KLANLLLDY-DGQSIHVTGSFGIASYPQHGESQSELILAADSALYQAKSDGRNCVRLF 428


>gi|294140101|ref|YP_003556079.1| response regulator [Shewanella violacea DSS12]
 gi|293326570|dbj|BAJ01301.1| response regulator [Shewanella violacea DSS12]
          Length = 306

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 91/191 (47%), Gaps = 15/191 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +++   +S  I  +L    +++  ++  D L+ L N    I S          +   LS+
Sbjct: 112 AIVTARVSTQI--KLKHQSDQLRNMALHDQLTKLYNRHFLIESAASKLAYVDRHGNDLSV 169

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK IND FGH VGD+V+  ++D L         V R GGEEF       S + 
Sbjct: 170 LMIDIDFFKHINDQFGHHVGDRVLKAIADILKTGNRREDVVARFGGEEFVVLLEHCSLKS 229

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
           A   A  LR  IE  +        I +T S G+A+   H++    ++ RAD A+Y AK  
Sbjct: 230 AVEKAESLRAQIEALEPM-----GIAVTASFGVAQLMKHEQTFVELLSRADAAVYQAKDL 284

Query: 251 GRNRVVCFSDI 261
           GRNRVV   D 
Sbjct: 285 GRNRVVAAEDE 295


>gi|261247152|emb|CBG24975.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
          Length = 570

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 101/203 (49%), Gaps = 11/203 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+    T  LL+ + +   ++K +F+  N +   +  D L+ L N  A          
Sbjct: 362 LTLLWGLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 +  S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
            AD+ LY AK+SGRNR+ C SD 
Sbjct: 542 LADKRLYYAKQSGRNRI-CASDA 563


>gi|238752511|ref|ZP_04613986.1| hypothetical protein yrohd0001_19570 [Yersinia rohdei ATCC 43380]
 gi|238709274|gb|EEQ01517.1| hypothetical protein yrohd0001_19570 [Yersinia rohdei ATCC 43380]
          Length = 415

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/186 (32%), Positives = 90/186 (48%), Gaps = 15/186 (8%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLS 130
           I L+L  I    + E       +   +  D L+ L N   F        +    YN+  S
Sbjct: 233 IRLMLCIIH--DITEQKRLEQALEHAALRDPLTNLGNRRQFFPLVEQAYTQSQRYNQNFS 290

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D+FK IND  GH  GD+V+  L+  L  +      V R GGEEFA     ++ Q
Sbjct: 291 LILLDVDHFKSINDQLGHHKGDEVLILLARTLESIVRESDSVFRWGGEEFAILLPLTNLQ 350

Query: 191 EAAILANDLRKIIENS-QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            A  LA  +R+ I+   Q N+ +     +T+S G+A+    E   ++  R D+ALY AK 
Sbjct: 351 GALQLAESIRETIQMICQPNLPT-----LTVSLGVAQHQVGEDTDSLFKRMDEALYRAKA 405

Query: 250 SGRNRV 255
           +GRNRV
Sbjct: 406 AGRNRV 411


>gi|39996055|ref|NP_952006.1| GGDEF domain-containing protein [Geobacter sulfurreducens PCA]
 gi|39982820|gb|AAR34279.1| GGDEF domain protein [Geobacter sulfurreducens PCA]
 gi|307634775|gb|ADI83801.2| diguanylate cylase [Geobacter sulfurreducens KN400]
          Length = 430

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 112/234 (47%), Gaps = 17/234 (7%)

Query: 45  IANIFLFYIGLTPFYG-LEYILVENLS-LVIISITISLLLGYISGSILKELFISYNRISQ 102
           +   F  Y+ ++ +   +  ++V   + L+++ +++     ++   + + L  +   + +
Sbjct: 183 VIGAFEIYMDVSRYTSDVRNVVVSTFAILLVVLLSVFGCSFFVIRRMTERLREAEAELKR 242

Query: 103 LSRIDCLSGLLNHSA--------FISSLGSYNEKLSI-----VFFDIDYFKQINDNFGHP 149
           ++  D L+G+ N           F   +    ++ ++     +  D+D+FKQIND +GH 
Sbjct: 243 IAVTDPLTGIANRRQIIHRATEEFARQMRRKQQRTAVPSLGIIMADVDHFKQINDTYGHS 302

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++ ++  V      VGR GGEEF      +  +E   +A  +R+ + +  + 
Sbjct: 303 AGDDVLREIASRIGSVLRQYDAVGRYGGEEFLVILSETELEETWHIAERIRRRVADDPV- 361

Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +     I ++ S GIA     E      + RAD+ LY+AK +GRNRV+C  D +
Sbjct: 362 VVDNQVIRVSASLGIATVLAGEADYRPALERADKGLYLAKTAGRNRVMCAGDEQ 415


>gi|67922940|ref|ZP_00516436.1| GGDEF [Crocosphaera watsonii WH 8501]
 gi|67855223|gb|EAM50486.1| GGDEF [Crocosphaera watsonii WH 8501]
          Length = 679

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            +     +  ++   +  D L+ L N + F  +L        + N  +++VF D+D FK 
Sbjct: 259 DITARKQAEKKLEYRAFSDTLTDLPNRNYFDENLEIALVKAKNNNNLMAVVFLDLDCFKN 318

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           IND+ GH VGD+++   + +L         + R GG+EF        S ++   LA  + 
Sbjct: 319 INDSLGHKVGDQLLKSFAQRLSSCVRNNDIISRWGGDEFTLLLPQINSPEDTINLAQRIL 378

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + ++  Q    +G  +++  S GIA      E   T++  AD ALY AK+ GRN    +S
Sbjct: 379 EDLK--QPFEVAGHQLYVKTSIGIAIYPQDGEDGETLLKNADAALYRAKERGRNHYRFYS 436

Query: 260 DIENNTC 266
               +  
Sbjct: 437 STMTSKA 443


>gi|163849043|ref|YP_001637087.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222527011|ref|YP_002571482.1| diguanylate cyclase [Chloroflexus sp. Y-400-fl]
 gi|163670332|gb|ABY36698.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222450890|gb|ACM55156.1| diguanylate cyclase [Chloroflexus sp. Y-400-fl]
          Length = 370

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 81/179 (45%), Gaps = 13/179 (7%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            + L+ L        Q S  D L+G+ N   F       I     Y   L+++  D+D+F
Sbjct: 195 NAYLQSLEDKLAAAQQQSLTDPLTGVFNRRGFALRLSEEIERARRYQVTLALLLIDVDHF 254

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQ ND FGH  GD+V+  ++  L         V R GGEEFA     ++   A +L   L
Sbjct: 255 KQYNDTFGHLAGDEVLRMIAQLLSEGCCKHDIVARYGGEEFAVILPATAGDGAQVLGERL 314

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVC 257
           R++++ +   +       +TIS G A    +      +I RAD ALY AK  GRN  V 
Sbjct: 315 RRLVQMAAWPLH-----PLTISVGGAVLQPEMTDEHDLIARADSALYQAKAQGRNTCVI 368


>gi|302188603|ref|ZP_07265276.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 316

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 110/220 (50%), Gaps = 10/220 (4%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
              + +    L P   L   + +  + + + +T  + +G++S  +  +L+   N + ++S
Sbjct: 83  ALGVLISLAALDPVVNLHGNMAQIYACLPVLVTYPIFIGWLSHQVTLKLWEHRNILRKVS 142

Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           R D L+GLLNH A+   L        +  ++  I   DID+FK IND +GH +GD V+  
Sbjct: 143 RTDSLTGLLNHGAWKDLLDLEYASSQNAYQECVIALIDIDHFKVINDTYGHLMGDTVLQS 202

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +S+ L+        +GR GG+EF      +   +A  +   LR  I+     +     + 
Sbjct: 203 ISEALIENLRDSDLIGRCGGDEFCVILPNTGLFQAKEILERLRLAIDEMTYTLQ--RDLK 260

Query: 218 ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
           +++S GIA    +    S+ ++ AD+ALY+AK +GRNRV 
Sbjct: 261 VSLSIGIAAYSPEMPDASSWLHEADKALYLAKSTGRNRVA 300


>gi|254457773|ref|ZP_05071201.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207086565|gb|EDZ63849.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 486

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/193 (29%), Positives = 97/193 (50%), Gaps = 11/193 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------ 125
           +IIS+  +LL   I   +L+     + ++  L+  D L+ + N   F +    +      
Sbjct: 288 LIISLIFTLLFAIIIMFVLRN---YHRKLEILADFDSLTEIPNRRNFNTKFEQFLSLHKR 344

Query: 126 -NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
               + +VF DID FK IND  GH +GD+V+  ++  L         + R GGEEF  A 
Sbjct: 345 DERPICLVFMDIDDFKSINDELGHNIGDEVLIQVAKILKNRVRKTDLLSRWGGEEFTIAF 404

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
           + ++  +A  +   +R+ IE ++  +      ++T S G+      + I T+I RAD+A+
Sbjct: 405 IDTNINDAHTITQKIREAIEKNE-TLKKTVGYNLTASFGLTACNEYDTIDTVISRADKAM 463

Query: 245 YVAKKSGRNRVVC 257
           Y AK+ G+NRVV 
Sbjct: 464 YEAKQHGKNRVVL 476


>gi|254457111|ref|ZP_05070539.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207085903|gb|EDZ63187.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 415

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 7/165 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I+  +  D L+GL N   F  ++  Y        E+ ++   DID FK IND +GH +GD
Sbjct: 250 ITNHANRDFLTGLYNRRYFFQNMQEYIEDTKESGEQFAVSMIDIDNFKHINDTYGHDIGD 309

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KVI  +S+ L         V R GGEEF       ++  A+ +   LR+ +E     I +
Sbjct: 310 KVITSISEILRTNTSYRDIVARFGGEEFCVVLKNINKYSASDILERLRQEVEKFNFTIDA 369

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             SI  TIS G++     + +   I +AD  L+ AK++G+NR+  
Sbjct: 370 NKSIKFTISIGVSIHDDDDTLEETINQADMMLHGAKQNGKNRIEF 414


>gi|189354084|ref|YP_001949711.1| putative diguanylate cyclase [Burkholderia multivorans ATCC 17616]
 gi|189338106|dbj|BAG47175.1| putative diguanylate cyclase [Burkholderia multivorans ATCC 17616]
          Length = 522

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 15/210 (7%)

Query: 63  YILVENLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSA 117
           Y    + ++ I S    L LG++  S+L     ++   +   +  L+R D L+GL N   
Sbjct: 298 YAAWYDRAIPIGSAMALLALGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRM 357

Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
              +L     +       LS++F D+D+FK+ ND+ GH  GD  +A +   +      P 
Sbjct: 358 LDVTLAREWRRAARSQHALSLLFVDVDHFKRYNDSQGHQAGDDALAAVGRCIAGCLRRPA 417

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--R 227
            +  R GGEEF           A  +A  +R  I    I         +T S G+A    
Sbjct: 418 DYAARYGGEEFVVILPDIGSDGAVAIAETIRTSILELGIRHDGSAFGCLTASIGVATCRP 477

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              + +   +  AD ALY AK++GRNRVV 
Sbjct: 478 DRDDDMHAALKLADDALYRAKETGRNRVVV 507


>gi|119898350|ref|YP_933563.1| REC/GGDEF-domain-containing protein [Azoarcus sp. BH72]
 gi|119670763|emb|CAL94676.1| probable REC/GGDEF-domain containing protein [Azoarcus sp. BH72]
          Length = 325

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 64/218 (29%), Positives = 108/218 (49%), Gaps = 18/218 (8%)

Query: 60  GLEYILVENLSLVIISITISLL--LGYISGSIL---KELFISYNRISQLSRIDCLSGLLN 114
           G +  L + +S V++   +  +  +  +  S+L   ++L  +   +++LS +D L+G+ N
Sbjct: 97  GGDDYLAKPVSEVVLKAKVRAMQRIAQMRYSLLVVTRKLDEANRELTRLSSVDGLTGIPN 156

Query: 115 HSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVF 166
              F  +L             ++++  D+D FKQ ND +GH VGD+ +  ++  L   + 
Sbjct: 157 RRRFDETLLREWRRAARTGHPIALLVADVDSFKQFNDGYGHQVGDECLKAVARTLEQRLR 216

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIA 225
                V R GGEEFAA    +S + AA +A  +R  +E+  I      S   ++IS G+A
Sbjct: 217 RPTDLVARYGGEEFAAILPETSVEGAAAVAETMRAGVESLCITHRFSTSGPVVSISIGVA 276

Query: 226 ----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                R  +     ++  AD ALY AK +GRNRVV  S
Sbjct: 277 AIVPARGDENGFVALLKSADDALYRAKAAGRNRVVTHS 314


>gi|239787440|emb|CAX83912.1| Diguanylate cyclase [uncultured bacterium]
          Length = 342

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 9/173 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           E  ++Y  +   +R D L+GL+N   F             + + L++   D+D+FK IND
Sbjct: 172 ERALAYEDLYDQARRDALTGLVNRRVFEERADVEMAHAQRHKQPLTLACLDLDFFKVIND 231

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+ +  +S            + R+GG+EFA     +S + AA+L   L K + 
Sbjct: 232 RLGHAEGDQALKTVSQTFTKTVRDSDLLARVGGDEFAMILPNTSLENAALLMERLCKAVR 291

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             QI+      + +  S GIA    ++ + +   RAD ALY AK++GR++V  
Sbjct: 292 ALQISAPDSAPLGV--SVGIASWNTEDSLESWWQRADAALYRAKEAGRSQVCI 342


>gi|221210482|ref|ZP_03583462.1| diguanylate cyclase [Burkholderia multivorans CGD1]
 gi|221169438|gb|EEE01905.1| diguanylate cyclase [Burkholderia multivorans CGD1]
          Length = 522

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 15/210 (7%)

Query: 63  YILVENLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSA 117
           Y    + ++ I S    L LG++  S+L     ++   +   +  L+R D L+GL N   
Sbjct: 298 YAAWYDRAIPIGSAMALLALGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRM 357

Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
              +L     +       LS++F D+D+FK+ ND+ GH  GD  +A +   +      P 
Sbjct: 358 LDVTLAREWRRAARSQHALSLLFVDVDHFKRYNDSQGHQAGDDALAAVGRCIAGCLRRPA 417

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--R 227
            +  R GGEEF           A  +A  +R  I    I         +T S G+A    
Sbjct: 418 DYAARYGGEEFVVILPDIGSDGAVAIAETIRTSILELGIRHDGSAFGCLTASIGVATCRP 477

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              + +   +  AD ALY AK++GRNRVV 
Sbjct: 478 DRDDDMHAALKLADDALYRAKETGRNRVVV 507


>gi|197116854|ref|YP_002137281.1| sensor diguanylate cyclase/phosphodiesterase, PAS domain-containing
           protein [Geobacter bemidjiensis Bem]
 gi|197086214|gb|ACH37485.1| sensor diguanylate cyclase/phosphodiesterase, PAS, PAS and PAS
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 853

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 94/197 (47%), Gaps = 15/197 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEK 128
           ++I+ L G+I    + ++  +   I  L+  D L+ L N S     +          +  
Sbjct: 390 LSITRLDGFIL--DITDIKRAEENIFFLAHHDPLTKLPNRSTLYERMEQVICAAQKSSRN 447

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           ++++F DID FKQIND+ GH VGD+++  ++ +L     +   V RLGG+EF        
Sbjct: 448 VALLFLDIDGFKQINDSMGHDVGDRLLQSVAKRLSDCTRSCDVVSRLGGDEFVVMLWDCG 507

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247
           E E  ++A      + N+   +  G ++ +T S GI+          T++  AD A+Y A
Sbjct: 508 ETETTVVAEK----VINAGFPVL-GSNVTVTPSIGISVFPDDGRDYLTLLKHADIAMYHA 562

Query: 248 KKSGRNRVVCFSDIENN 264
           KKSG N    F+   N 
Sbjct: 563 KKSGGNNFQFFTHRLNE 579


>gi|119897858|ref|YP_933071.1| GGDEF/EAL-domain-containing protein [Azoarcus sp. BH72]
 gi|119670271|emb|CAL94184.1| GGDEF/EAL-domain containing protein [Azoarcus sp. BH72]
          Length = 1090

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
             +     +   I  L+  D L+GL N SA+++           +   L+++F D+D FK
Sbjct: 647 QDVTSAREAEAHIQYLAHYDSLTGLPNRSAWMNQARSALSLAQRHQHILAVLFLDLDNFK 706

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            +ND+ GHPVGD+++A ++ +L           RLGG+EF A     +  ++AA +A  +
Sbjct: 707 TVNDSLGHPVGDRLLAAVAQRLAHCLREEDSFARLGGDEFVALLPRVTRAEDAAAVARKM 766

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +      +     +  ++S GI+        + T++  AD A+Y AK+ GRN    F
Sbjct: 767 LDALAT--PVVIDDHELAPSVSIGISLFPSDGTDVDTLLKHADTAMYGAKEVGRNNFQFF 824

Query: 259 SDIENNTC 266
               N   
Sbjct: 825 VPEMNTRA 832


>gi|30249662|ref|NP_841732.1| diguanylate cyclase/phosphodiesterase [Nitrosomonas europaea ATCC
           19718]
 gi|30139025|emb|CAD85611.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Nitrosomonas
           europaea ATCC 19718]
          Length = 1128

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 10/183 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFK 140
           + + ++  S  +++ L+  D L+GL N           +     YN +++ ++ D+D FK
Sbjct: 682 TDISQIKQSEAQLAHLAHYDPLTGLPNRLLVQSRLHHAVERAQRYNLRVATLYIDLDRFK 741

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
            +ND+ GHP+GD+++  L+++L         + RLGG+EF           E+AI+A  L
Sbjct: 742 NVNDSLGHPIGDELLIKLTERLKNRLREEDALARLGGDEFLLVMEDVKDPSESAIVAQTL 801

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
             ++  +   + SG  I I  S GI+         + +I  AD A+Y AKK GRN     
Sbjct: 802 IDLLA-TPFVLPSGHEIFINASIGISLFPDDASNATELIQHADMAMYQAKKEGRNTYRYH 860

Query: 259 SDI 261
           ++ 
Sbjct: 861 TEA 863


>gi|312879105|ref|ZP_07738905.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM
           12260]
 gi|310782396|gb|EFQ22794.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM
           12260]
          Length = 786

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 12/200 (6%)

Query: 64  ILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +  E L++  +      +L ++     L E      RI+  +  D L+GL N   F+ SL
Sbjct: 560 VYPEWLTISAVRDYTGRILNFVGITRDLTERKRYEERIAHEATHDALTGLPNRRHFLESL 619

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                      + L ++F D+D FK IND  GH VGD+++  ++++L         V R+
Sbjct: 620 QHHLALADRAGDLLGVLFMDLDGFKGINDTLGHDVGDRLLCAVAERLQHCVRASDLVARM 679

Query: 176 GGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF          ++   +A  +  ++   +       ++ ++ S G A        +
Sbjct: 680 GGDEFTFLLPQLHGREDMKGVAGKI--LLAFREPFALGKDTVRVSASIGGALFPLDDRDL 737

Query: 234 STIIYRADQALYVAKKSGRN 253
             ++  AD A+Y  K+ GRN
Sbjct: 738 QGLLKLADMAMYRTKERGRN 757


>gi|255262458|ref|ZP_05341800.1| response regulator receiver modulated diguanylate cyclase
           [Thalassiobium sp. R2A62]
 gi|255104793|gb|EET47467.1| response regulator receiver modulated diguanylate cyclase
           [Thalassiobium sp. R2A62]
          Length = 459

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 19/185 (10%)

Query: 92  ELFISYNRISQ-------LSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDID 137
                 +R+ +        +  D L+GL N    +               + +++  DID
Sbjct: 270 RRKQQQDRLRKGVSDGLNAAVTDPLTGLFNRRYAMPHLERIAERAKESGREFAVMMLDID 329

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK +ND +GH  GD V+  ++ +L         + R+GGEEF      ++++EA I A 
Sbjct: 330 HFKSVNDKYGHRAGDAVLIEVARRLRNNLRLIDLIARVGGEEFLVTLPETTQEEAEIAAQ 389

Query: 198 DLRKIIENSQINISS-GPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGR 252
            LR +++++  +I   G  + +T+S G+A    +     P   +  RAD ALY AK +GR
Sbjct: 390 RLRSVVDDTPFHIPQLGMPVPVTLSIGVAMSGDEALLTPPFDHLFGRADAALYSAKNAGR 449

Query: 253 NRVVC 257
           N V  
Sbjct: 450 NTVEI 454


>gi|238764620|ref|ZP_04625566.1| hypothetical protein ykris0001_24790 [Yersinia kristensenii ATCC
           33638]
 gi|238697210|gb|EEP89981.1| hypothetical protein ykris0001_24790 [Yersinia kristensenii ATCC
           33638]
          Length = 277

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/162 (33%), Positives = 79/162 (48%), Gaps = 7/162 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++   +  D ++GL N     ++L       +  S++  DID+FK IND++GH VGD+VI
Sbjct: 119 KLRFEAHTDPMTGLYNRRGLATTLEPIAQLGQHFSVIALDIDHFKSINDSYGHDVGDEVI 178

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L+ Q+         + R GGEEF     G+    A  +AN LR  +E   I       
Sbjct: 179 KQLAIQIRDSSRDSDILCRSGGEEFLMLLPGTVPDVAIQVANRLRHNVEMMVIPGIQ--- 235

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             ITIS G+A           + RAD+ALY AK+ GRN V  
Sbjct: 236 -PITISLGVAFWNGVGAPEDALKRADEALYRAKQQGRNWVEV 276


>gi|157376915|ref|YP_001475515.1| sensory transduction system, regulatory protein [Shewanella
           sediminis HAW-EB3]
 gi|157319289|gb|ABV38387.1| sensory transduction system, regulatory protein [Shewanella
           sediminis HAW-EB3]
          Length = 546

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 14/215 (6%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           +   +G  ++L+   S +   +  S L+         +L  +  ++ +LS+ D L+ + N
Sbjct: 311 MIAIFGGLFVLL-GASYIYAILRRSELIESEVEQRTHDLNEAKRKLEELSQTDGLTKIPN 369

Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
              F  +L            K+ ++  DID+FK  ND +GH  GD+ +  ++  L     
Sbjct: 370 RRCFDETLQALWQKAIREESKIGLMMIDIDHFKLYNDTYGHLAGDQCLREVAQALSQTLN 429

Query: 168 -TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGIA 225
                V R GGEEF      +  ++    A   +  IE   +  +S   S  IT+S G+A
Sbjct: 430 LNTDLVARYGGEEFVVLLPDT--RDCLSPAKRCQYNIERLGLPHNSSLTSEFITVSIGVA 487

Query: 226 ERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCF 258
                +      +  +AD ALY AK SGRNRV  F
Sbjct: 488 SISPTQDSDLVDLTTQADLALYEAKNSGRNRVCFF 522


>gi|114569040|ref|YP_755720.1| diguanylate cyclase [Maricaulis maris MCS10]
 gi|114339502|gb|ABI64782.1| diguanylate cyclase [Maricaulis maris MCS10]
          Length = 384

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 120/242 (49%), Gaps = 15/242 (6%)

Query: 23  SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL 82
            P   ++ ++I++  F+ ++       L      P       LV    L ++ +  +L+ 
Sbjct: 146 QPGVRLLRYTIYY--FVGSLTVTCGGVLLLTPEMPSILAPSQLVAMGLLSLLVVETNLVF 203

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFD 135
           G++  S  +   +    + + +  D L+GL N  AF + +  +        ++ ++V FD
Sbjct: 204 GFVLLSASRSASV----LRRAALTDHLTGLPNRRAFEALVNDHFEMAPSGEQQAALVVFD 259

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FKQ+ND  GH VGD V+  ++  L         V RLGGEEF A      E     +
Sbjct: 260 IDHFKQVNDGHGHDVGDAVLQHVATVLQAAIRDTDHVARLGGEEFVALIHARPEASVHDI 319

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
           A+ +R+ + +    +  G  + +TISAG+ E    +P ++++  RADQALY AK +GRN+
Sbjct: 320 ADRIRQAVADRPF-VLDGREVSVTISAGLVEVSGGQPTLASLFKRADQALYKAKDAGRNQ 378

Query: 255 VV 256
           VV
Sbjct: 379 VV 380


>gi|254513944|ref|ZP_05126005.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [gamma proteobacterium NOR5-3]
 gi|219676187|gb|EED32552.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [gamma proteobacterium NOR5-3]
          Length = 643

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 11/183 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L      +  L+  D L+GL N    I  L             L+++F D+D+FK IND+
Sbjct: 206 LRFQQRSLEHLAHHDALTGLPNRLYLIDKLNHALLSPDLNTASLAVLFLDLDHFKDINDS 265

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIE 204
            GH +GD+V+  +S +L         + RLGG+EF     G  S   A  +A  + K+ +
Sbjct: 266 LGHSLGDEVLRAVSRRLSACVRKADVIARLGGDEFTIVLQGIGSSIIAVEVAQKILKVFQ 325

Query: 205 NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             +    S  +++++ S GI+           ++  AD A+Y AK+SGRN  + +S    
Sbjct: 326 --EPLTLSDRTLNVSTSIGISVSPGDGVTTEELLRNADAAMYRAKRSGRNTFMHYSPDMT 383

Query: 264 NTC 266
              
Sbjct: 384 ERA 386


>gi|51246567|ref|YP_066451.1| hypothetical protein DP2715 [Desulfotalea psychrophila LSv54]
 gi|50877604|emb|CAG37444.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 382

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 8/179 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDY 138
           +G  + E   +   + +L+  D L+GLLN    +  L +  ++       L++   DID+
Sbjct: 182 TGIDITEDRRAEQLLMELASRDELTGLLNRRKIMEILDTEIKRAADNKTALTLCLVDIDH 241

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++ND  GH  GD V+ +++D +         VGR GGEEF      +S  EA+++   
Sbjct: 242 FKKVNDVHGHSAGDTVLRYVADTIRRGIRKADRVGRYGGEEFCILLPHTSISEASLVLER 301

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           +R+ I      + S   + ++IS G  +          +I  AD ALY AK+SGRNR+ 
Sbjct: 302 IRQDIAAMTFPLDSSDELSLSISLGQVQYAPAIRSPRQLIDLADTALYRAKRSGRNRLC 360


>gi|167036757|ref|YP_001664335.1| GAF sensor-containing diguanylate cyclase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115180|ref|YP_004185339.1| diguanylate cyclase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166855591|gb|ABY93999.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928271|gb|ADV78956.1| diguanylate cyclase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 554

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 112/233 (48%), Gaps = 20/233 (8%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           S+ +A + F  ++    IG      +E  + +  S+ II I +      I+ +       
Sbjct: 332 SVVVAPLRFSGSV----IGCLMVLHVETNVFDEDSVKIIEIIVDQASVAITNA------K 381

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148
            Y  +++ S  D L+   N   F  +L          +E +S++ FD+D FK IND +GH
Sbjct: 382 RYYEVTKKSITDPLTKTYNRRYFNDALMENIMRADETSEPVSLIMFDLDNFKLINDTYGH 441

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+V+  ++ ++     +   V R GGEEFA      + ++A ++A  +R  + +  I
Sbjct: 442 LVGDEVLKEVAKRIKNNVRSDDIVARFGGEEFAVILPKLTAEQAYMIAERIRNEVSSRPI 501

Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYV-AKKSGRNRVVCFS 259
               G  I++TI+ G+A+   K +    +I  AD+ALY   K  GRN++  + 
Sbjct: 502 RTDKG-DIYVTITGGVADYPEKADSAEKLISHADRALYAGGKSKGRNKIAIYE 553


>gi|289679897|ref|ZP_06500787.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 609

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 19/214 (8%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +G   +L  ++  + ++ T  LL+   +   +  L  +  +I  L+  D L+GL N +  
Sbjct: 158 HGAPLVLDISVEFITLNNTACLLM---NARDIGALKNAQAQIQHLAYHDPLTGLPNRALL 214

Query: 119 ISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           +  L          N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         
Sbjct: 215 LDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 274

Query: 172 VGRLGGEEFAAAALGSS------EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
           V RLGG+EF     G         Q+   LA++LR ++         G  + +T S G+ 
Sbjct: 275 VARLGGDEFVVLICGLEGSQDEVTQQVRELADNLRNLLAEPMF--LDGHRLQVTPSIGVV 332

Query: 226 ERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
                    + ++ RAD ALY AK  GRN    F
Sbjct: 333 LIPDDGLTPADLLKRADIALYRAKDCGRNASQFF 366


>gi|209518928|ref|ZP_03267739.1| diguanylate cyclase [Burkholderia sp. H160]
 gi|209500651|gb|EEA00696.1| diguanylate cyclase [Burkholderia sp. H160]
          Length = 414

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 58/181 (32%), Positives = 86/181 (47%), Gaps = 15/181 (8%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFG 147
               R+ QL   D L+GL N   F   L         Y+  ++ +F DID FK IND  G
Sbjct: 230 AHRERLKQLGMTDSLTGLANRRYFDERLREELMRAVRYHAPVACLFIDIDGFKLINDTHG 289

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+ +A ++  +         V R GGEEFAA   G    +A  +A  +R  +EN  
Sbjct: 290 HQTGDRALAEVAACVRQQVRLGDTVARYGGEEFAALLQG-DRADALTVAERVRSAVENLD 348

Query: 208 INISSGPSIHITISAGIAERCHKEPIST-------IIYRADQALYVAKKSGRNRVVCFSD 260
           +    G  I +T+S G+A R      +        ++  AD+A+Y+AK++GRNR+    D
Sbjct: 349 VRDEHGERIALTVSIGVAARVVSGTSAEAMSLGQAMMDEADRAMYLAKRNGRNRIEAHVD 408

Query: 261 I 261
            
Sbjct: 409 A 409


>gi|167552973|ref|ZP_02346723.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|204930080|ref|ZP_03221101.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204321074|gb|EDZ06275.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205322476|gb|EDZ10315.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 353

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 127/266 (47%), Gaps = 28/266 (10%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY------GLEYILVE----- 67
           + S+  + F++++ + F+  ++ ++ +  +   Y  L           L  +L       
Sbjct: 87  MWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLWLTALLASVQLNQ 146

Query: 68  --NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDCLSGLLNH 115
             N+  +++ +T++ +L Y   I      E ++ Y        R+  ++  D L+G  N 
Sbjct: 147 YVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANR 206

Query: 116 SA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MF 171
            +   F+       E  +++  D+DYFK  ND++GH  GD  +A ++  +     TP   
Sbjct: 207 RSMEIFLGDALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVAGVMKRSVRTPADL 266

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKII-ENSQINISSGPSIHITISAGIAERCHK 230
           V R GGEEF      SS  EAA++A  ++  + E +  + +S  S  +T+S GI      
Sbjct: 267 VARYGGEEFVVVLPSSSLNEAALVAERIQTNLRETAMPHAASAVSETVTVSMGITLSTAG 326

Query: 231 EPISTIIYRADQALYVAKKSGRNRVV 256
           + ++ II RAD+ALY AK+ GRNR V
Sbjct: 327 DTVTGIIARADEALYRAKQQGRNRWV 352


>gi|220922753|ref|YP_002498055.1| diguanylate cyclase [Methylobacterium nodulans ORS 2060]
 gi|219947360|gb|ACL57752.1| diguanylate cyclase [Methylobacterium nodulans ORS 2060]
          Length = 628

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 87/173 (50%), Gaps = 5/173 (2%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS----YNEKLSIVFFDIDYFKQINDN 145
           ++E     + +   +  D L+GLLN         S     ++K+ ++  DID+FK IND 
Sbjct: 428 IEERATMTSELRVQAETDGLTGLLNRRMLDRLAQSPPGSADDKVCLILIDIDHFKAINDT 487

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD+V+  +++ L  V      + R GGEEFA    G+    A  +A  +R  ++ 
Sbjct: 488 YGHATGDRVLIQMAELLQSVLRASDVIARFGGEEFAVLVPGADLSGAITVARKVRIALQR 547

Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++     G  + +T S G+A  R  +E    ++  AD+ALY AK  GRNRV  
Sbjct: 548 ARFTTPDGTPVRVTASFGVARGRRGQEAWPCLVELADEALYRAKSDGRNRVRF 600


>gi|89901321|ref|YP_523792.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
 gi|89346058|gb|ABD70261.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
          Length = 398

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 86/179 (48%), Gaps = 9/179 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           E+      + + +  D L+GL N      +L          N  L+ V  DID+FK +ND
Sbjct: 218 EVQRLQVELHEQAIHDPLTGLYNRRYLSDALAREIIQAKRANSSLTFVMADIDHFKFVND 277

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           ++GH  GD+V+  ++  L           R GGEEF     G+S + A   A ++++   
Sbjct: 278 SYGHLAGDEVLVQVASLLKKHARGSDIACRYGGEEFLLVFPGTSLELAHKRAEEIQQNCA 337

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              I    G +I + +S G+A    H +    II +AD+ALY +K +GRN+V  F D E
Sbjct: 338 ALSIQH-EGKNIAVMLSFGVAAYPDHGQQWEQIIVKADKALYQSKCNGRNQVTIFRDEE 395


>gi|58425657|gb|AAW74694.1| response regulator [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 515

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 92/198 (46%), Gaps = 14/198 (7%)

Query: 71  LVIISITISLLLG--YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE- 127
           +V+ ++   LLLG        L+ +  +  ++S  + +D L+G+ N  AF   L    + 
Sbjct: 315 IVVAALGCVLLLGVGIWLDLQLRRMHRNEAQLSTEAWVDALTGIANRRAFDDRLSRALQD 374

Query: 128 ------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEF 180
                  LS++  D+D+FK  ND +GH  GD  +  ++  +            R GGEEF
Sbjct: 375 AIRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRVIAGTIAACSRRSEDVAARYGGEEF 434

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKE---PISTI 236
                 +    A  LA+ +R  +    +   S P S H+T+S G+A     E     + I
Sbjct: 435 GMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGVATFEPGEAPLSPNAI 494

Query: 237 IYRADQALYVAKKSGRNR 254
           ++ AD ALY AK+ GRNR
Sbjct: 495 VHDADSALYRAKQKGRNR 512


>gi|330985811|gb|EGH83914.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 829

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           + +  L  +  R+   +  D L+GL N + F S L S            +++F D+D FK
Sbjct: 373 ADISSLKHAQARLDYQAHHDPLTGLPNRTLFESRLQSALLHSEESGSLGAVLFLDLDRFK 432

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND+ GHPVGD ++  ++ +L         V RLGG+EF     G     +A  +AN L
Sbjct: 433 HINDSLGHPVGDLLLKGIAHRLKETLRDVDTVARLGGDEFIVLLPGLLQPSDAQAIANKL 492

Query: 200 RKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 +    +    ++I+ S G          ++T++  AD A+Y +K  GRNRV  +
Sbjct: 493 LACF--NTPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKAKGRNRVESY 550

Query: 259 S 259
           +
Sbjct: 551 T 551


>gi|323703978|ref|ZP_08115604.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531054|gb|EGB20967.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfotomaculum nigrificans DSM 574]
          Length = 631

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 11/188 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
           G  + E  +   ++  L+  D L+GL N  +    L            +L+++F D+D F
Sbjct: 198 GEDITERQLIQEKVKFLAYHDVLTGLPNRLSLTEQLAREIKRAERLGSQLAVLFLDLDRF 257

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K  ND  GH  GD+++  + ++L+ +      + RLGG+EF       +   +A  +A  
Sbjct: 258 KVTNDTLGHTAGDELLKQVGERLLGLLNHHGILTRLGGDEFIIILPDLTGLPQAVEIAEG 317

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L +  +    N+  G  +H+T S GIA        + T++  AD A+Y AK  GRN    
Sbjct: 318 LLQAFQR-PFNVL-GSQLHVTTSIGIAVFPADGTDVQTLLKNADLAMYRAKGKGRNNYQL 375

Query: 258 FSDIENNT 265
           ++     T
Sbjct: 376 YTPEMQET 383


>gi|298291254|ref|YP_003693193.1| diguanylate cyclase [Starkeya novella DSM 506]
 gi|296927765|gb|ADH88574.1| diguanylate cyclase [Starkeya novella DSM 506]
          Length = 511

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 71/267 (26%), Positives = 119/267 (44%), Gaps = 20/267 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL 69
            +W       E  + +      S +  + +  +  +  +  +Y  L     +   +V   
Sbjct: 246 GVWQAEAPGDEGGNRYLLSHRISGYPLVLVMAISSVGALEGWYQQL----AVSAAVVLCT 301

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-----SSLGS 124
            L+++    +L L  +    ++ +      + +LS  D L+GL N  A        +L +
Sbjct: 302 LLIVVFTIRTLHLALLRSREMEAM------LQRLSLTDALTGLPNRRACDLMLAHEALRA 355

Query: 125 YNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFA 181
             +K  LS+   DIDYFK++ND +GH +GD+VIA ++  +         +  R GGEEF 
Sbjct: 356 ARDKTELSVAMIDIDYFKRVNDRYGHQIGDRVIARVAATIEATARRAGDYAARYGGEEFM 415

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYR 239
                +    A  LA  +R+ IE   +   +     +TIS G+A R   +   I  ++ +
Sbjct: 416 LILPSTGADGALFLAERVRRAIEGQDLQAEAPGLSGVTISIGLATRSVDDASTIEDLVQK 475

Query: 240 ADQALYVAKKSGRNRVVCFSDIENNTC 266
           AD+ALY AK SGRNRVV  S  E    
Sbjct: 476 ADRALYNAKSSGRNRVVAASAREEPAA 502


>gi|254784734|ref|YP_003072162.1| GGDEF domain-containing protein [Teredinibacter turnerae T7901]
 gi|237685671|gb|ACR12935.1| GGDEF domain protein [Teredinibacter turnerae T7901]
          Length = 444

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/184 (32%), Positives = 90/184 (48%), Gaps = 12/184 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           +I K L +   +   L++ D L+GLLN       L              S V  DID+FK
Sbjct: 266 AINKLLNLQNKQFEDLAKTDQLTGLLNRIGIRDVLYDGLNNWKERRTPFSFVLIDIDHFK 325

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND+FGH VGD+++   +  L        F+ R GGEEF      +   +A +LA  LR
Sbjct: 326 QVNDSFGHDVGDQILKLTAKLLAENIRRSDFLARWGGEEFILVCPDTDLYQAQVLAELLR 385

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           K +E++ ++    P   IT S G++       +  +  RAD ALY AK  GRN+V   +D
Sbjct: 386 KKLEDAPLH----PERQITASFGVSALSTP-NLDDLFKRADAALYEAKTQGRNKVCAVAD 440

Query: 261 IENN 264
            + +
Sbjct: 441 TDAD 444


>gi|254492620|ref|ZP_05105791.1| ammonium transporter, putative [Methylophaga thiooxidans DMS010]
 gi|224462141|gb|EEF78419.1| ammonium transporter, putative [Methylophaga thiooxydans DMS010]
          Length = 1000

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 93/186 (50%), Gaps = 11/186 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS----YNEKLS---IVFFDIDYFK 140
             +       +R+ QL+  D L+GL N + F+S L      + E L    ++F D+D FK
Sbjct: 556 RDITRQIRLQDRLKQLAYNDPLTGLYNRTYFMSHLKQRIAYHQENLGSVVLMFLDLDQFK 615

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           +INDN GH  GD+++  ++ +L  V      VGR GG+EF     G  +  +A   A D+
Sbjct: 616 KINDNLGHKAGDQLLCEVASRLKQVMRELDLVGRWGGDEFVIVMSGNITLSQAEHKAEDI 675

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
            K++ +       G ++ +  S G+A   + +     ++ +AD A+Y +K+SGRN    +
Sbjct: 676 LKVMRS--PVKLDGQTLVVPTSIGLAISENGQITPEQLMQQADMAMYRSKQSGRNTYRVY 733

Query: 259 SDIENN 264
            +  + 
Sbjct: 734 LEEMSE 739


>gi|218245994|ref|YP_002371365.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8801]
 gi|257059045|ref|YP_003136933.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8802]
 gi|218166472|gb|ACK65209.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8801]
 gi|256589211|gb|ACV00098.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8802]
          Length = 308

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 89/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
            + K+L  +   + +L+  D L+G+ N    +            Y     ++  D+D+FK
Sbjct: 130 QVQKQLQEACQTMKKLADTDELTGIANRRCLLEFAQREFQRSLRYGTPFCLLMIDVDHFK 189

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GHP GDK I ++ + + +      F GR GGEEF      ++   A  +A  +R
Sbjct: 190 NINDKYGHPNGDKAIQWVVEIIKLGLREVDFFGRFGGEEFIVVLPQTALGGALEVAERIR 249

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           + I +  + +    ++ +T S G+A    ++  +  +I RAD++LY AK  GRN+V+ 
Sbjct: 250 EAIASQPLTLEQD-TVTLTASIGVATYTGEDKTVVGMIQRADKSLYQAKAKGRNQVIA 306


>gi|92117963|ref|YP_577692.1| response regulator PleD [Nitrobacter hamburgensis X14]
 gi|91800857|gb|ABE63232.1| response regulator receiver modulated diguanylate cyclase
           [Nitrobacter hamburgensis X14]
          Length = 457

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 9/165 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N     S L +         + L+++  DID+FK IND +GH  GD V
Sbjct: 290 EMAVTDGLTGLHNRRYMESHLVTLAEQASLRGKPLALMMLDIDFFKSINDGYGHDAGDDV 349

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG- 213
           +   + ++           R GGEEF      ++   A ++A  LR+ I      +  G 
Sbjct: 350 LREFAVRIRKSIRGIDLACRYGGEEFVIVMPETNLHVAGMVAERLRRSIAGEPFAVHKGA 409

Query: 214 PSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
             I +TIS G++      EP++ ++ RAD ALY AK  GRNRVV 
Sbjct: 410 KRIDVTISIGLSILERKGEPVADVLKRADIALYRAKHDGRNRVVA 454


>gi|83310203|ref|YP_420467.1| signal transduction protein [Magnetospirillum magneticum AMB-1]
 gi|82945044|dbj|BAE49908.1| Predicted signal transduction protein [Magnetospirillum magneticum
           AMB-1]
          Length = 682

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 108/247 (43%), Gaps = 21/247 (8%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI---ISITISLLLGYIS---GSI 89
           +  + T + +A +     G  P   L   L  N S+++   +  +    LG +      +
Sbjct: 161 AFLLVTAVLLAAVRHLVTG--PLTRLRNSLHHNASVLMREPLVWSSRDELGEVVHAYNQL 218

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           L E+      I QL+  D L+GL N       +G         N  ++++F DID FK +
Sbjct: 219 LTEIDQRTEDIHQLANRDLLTGLPNRRLLEDRIGHAIALAGRQNRSIALLFADIDNFKVV 278

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRK 201
           ND  GH  GD ++  ++D++  +      V R GG+EF       +S  EAA +A  L  
Sbjct: 279 NDTLGHKQGDALLRIIADRIHDIMRGMDTVARWGGDEFVIVVESLNSAGEAASVAEKL-- 336

Query: 202 IIENSQINISSGPS-IHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            IE   + +  G + + + +S GI+        I+T+I  AD AL+ AK  GRN    F 
Sbjct: 337 -IETIGVPVQLGSNLLRVGVSVGISMYPQDGADITTLIKNADMALFEAKGRGRNTFHFFD 395

Query: 260 DIENNTC 266
              N   
Sbjct: 396 QAMNARA 402


>gi|116053637|ref|YP_793964.1| GGDEF domain-containing protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588858|gb|ABJ14873.1| putative GGDEF domain protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 671

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 78/164 (47%), Gaps = 8/164 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            Q +  D L+GL N +A    L             L +   DID+FK+IND+FGH  GDK
Sbjct: 508 RQKALTDPLTGLPNRAALSERLEQEVARRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDK 567

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  ++ +L        F+ R GGEEF      +S +    L   LR  I     +   G
Sbjct: 568 VLKIIAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHFK-G 626

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             + IT SAGI      E    +  RADQALY AK++GR+R+  
Sbjct: 627 EPLSITCSAGITAFEGNEAGEVVFERADQALYRAKRAGRDRLEV 670


>gi|134291605|ref|YP_001115374.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
 gi|134134794|gb|ABO59119.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
          Length = 210

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 10/172 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+R D L+GL N  AF   L             LS++F DID FK  ND++GH  GD
Sbjct: 29  LQRLARRDALTGLENRGAFDEMLSQEWANTLRTGRHLSLLFIDIDRFKSYNDHYGHQSGD 88

Query: 153 KVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           + +  ++  +          V R GGEEF      +  + AA +A ++R+ I +  +   
Sbjct: 89  QALKAVAHCISACVSRPSDHVARYGGEEFVVILPETDVEGAAAVAEEIRQAIHDMHVAHV 148

Query: 212 SGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                ++T S G++   H        +I  AD A+Y AK  GRNRV   ++ 
Sbjct: 149 KSGFGYVTASIGVSSSAHPAVHDGDALIRVADLAVYEAKSRGRNRVCIAAEA 200


>gi|241113169|ref|YP_002973004.1| diguanylate cyclase with PAS/PAC sensor [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240861377|gb|ACS59043.1| diguanylate cyclase with PAS/PAC sensor [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 628

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 90/200 (45%), Gaps = 13/200 (6%)

Query: 77  TISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NE 127
           T   ++  I+ +   E  L +S  ++  L+  D L+G++N  AF  +           N 
Sbjct: 422 TAMAVVSDITATKQAEIALRLSAEQLKSLAETDGLTGMVNRRAFDEAFARETAGSARKNT 481

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALG 186
             S++  DID FK  ND +GHP GD+ +  +S  L   V      V R GGEEF      
Sbjct: 482 PFSLLMVDIDRFKAYNDTYGHPAGDQCLRVVSRCLRQSVSRPADIVARYGGEEFVVLLPA 541

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQA 243
           +S + A I+A    +++    I  +      +T S GI+           + ++  AD A
Sbjct: 542 TSAKGAMIVAEQFARLLSQENIVHTGSEFGRVTASIGISCATGATLRINPNRLLSEADAA 601

Query: 244 LYVAKKSGRNRVVCFSDIEN 263
           LY AK  GRNR++  S  E 
Sbjct: 602 LYDAKTQGRNRILAHSPEER 621


>gi|226310687|ref|YP_002770581.1| signaling protein [Brevibacillus brevis NBRC 100599]
 gi|226093635|dbj|BAH42077.1| probable signaling protein [Brevibacillus brevis NBRC 100599]
          Length = 708

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 11/188 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
            +    + +   S   I  L+  D L+ L N   ++  L         +   L+++F D+
Sbjct: 263 LLITRDVTDRKQSEETIHHLAYHDALTDLPNRRMYVQQLSKEMMQAKRFQSSLAVLFLDL 322

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FK +ND+FGH VGD ++   S +L         V RLGG+EF           EA  L
Sbjct: 323 DRFKDVNDSFGHDVGDMLLIEASKRLQACLKPGDVVARLGGDEFTIMQNQLLDRNEATEL 382

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A  +  + +  +     G   +++ S GIA      +    ++ RAD ALY  K  G+N 
Sbjct: 383 AEQI--MYQLQRPFELDGHVFNVSCSIGIALYPQDGDNPEDLLKRADTALYTVKSRGKNG 440

Query: 255 VVCFSDIE 262
              F    
Sbjct: 441 YDFFDPSM 448


>gi|254491592|ref|ZP_05104771.1| hypothetical protein MDMS009_1927 [Methylophaga thiooxidans DMS010]
 gi|224463070|gb|EEF79340.1| hypothetical protein MDMS009_1927 [Methylophaga thiooxydans DMS010]
          Length = 805

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 90/182 (49%), Gaps = 9/182 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + E  +  N++S  +  D L+GL+N + F   L         ++   ++ F D+D FK 
Sbjct: 350 DITEARVLANKLSYQATHDNLTGLINRTEFERRLIELVQDARQHDSVHALCFIDLDQFKV 409

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH  GD+++  L  +L+        + RLGG+EFA         ++  +A ++R+
Sbjct: 410 INDTCGHIAGDELLRQLGQRLIGQVRKSDTLARLGGDEFAILMRHCDPGQSEKVATEVRE 469

Query: 202 IIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +IE  Q  +       I  S G++    H   ++ ++ +AD A Y AK +GRNRV  + D
Sbjct: 470 VIELFQF-VWDSRVFTIGASIGVSSIHRHTTDMTEVLKQADTACYAAKNAGRNRVYIYQD 528

Query: 261 IE 262
            +
Sbjct: 529 DD 530


>gi|224369321|ref|YP_002603485.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223692038|gb|ACN15321.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 341

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 11/172 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           +EL      + Q++ ID L+GL N       L         Y     ++  DID+FK +N
Sbjct: 165 RELEKKNRELEQIAIIDQLTGLFNRRKLDEMLSRELIRSRRYGNSFGLIMVDIDFFKTVN 224

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH +GD+V+   +DQL         +GR GGEEF      + +    +LA  LR  +
Sbjct: 225 DTHGHQIGDQVLQRFADQLKQGVREVDVLGRWGGEEFLIICPETIKDYLILLAEKLRIAV 284

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++  +          T S G+      + + T++ + D+ALY+AK+ GRNRV
Sbjct: 285 QSIAVPGVGEK----TASFGVTVYEKGDNLDTLVDKVDKALYLAKEKGRNRV 332


>gi|241204961|ref|YP_002976057.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858851|gb|ACS56518.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 355

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 8/183 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKL-SIVFFDIDYFKQIN 143
           + ++    +   +++  D L+ L N  AF   L      S    + +++  DID FK+IN
Sbjct: 162 MDQVRKELDEYKRIANTDSLTRLSNRRAFDDRLAAIFDNSSMRPVTALLLCDIDNFKKIN 221

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHPVGDKV+A ++  +       +FV R GGEEFA    G++ +E   +A  +R+ +
Sbjct: 222 DTYGHPVGDKVLATVASVIRSNVRRDIFVARTGGEEFALIIDGNTPEEVTGIAERIRRTL 281

Query: 204 ENSQINISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E +    S     +  +T+S GI    + E    +  + D ALY AK +GRN  + + D 
Sbjct: 282 ETTPFKNSRTRVNYGPVTVSIGICMASNAEDAGELYSKTDIALYGAKNAGRNCTILYQDG 341

Query: 262 ENN 264
              
Sbjct: 342 MQK 344


>gi|152995911|ref|YP_001340746.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150836835|gb|ABR70811.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 517

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 112/241 (46%), Gaps = 13/241 (5%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY-IS 86
           +I+ S+   + +   I+IAN F+        +    +  ++    I+SI       Y + 
Sbjct: 281 VIWKSLPVLLMMLIAIWIANRFITAPLQALAHHASNMHDKDAEHNILSIKSWYFEVYELK 340

Query: 87  GSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFK 140
            +IL  L     +I+QL   +  D L+GL N  +    L  + E     +++  DID+FK
Sbjct: 341 RAILSGLAALNQKINQLNIDTNTDPLTGLYNRRSLDQILEQWREMKQSFAVIALDIDHFK 400

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND FGH VGD+V+  LS  +         + R GGEEF      + +  A   A  LR
Sbjct: 401 VINDLFGHDVGDEVLKQLSQIMKETCDKNAIIFRNGGEEFLILLPSTKQSVAQFFAEKLR 460

Query: 201 KIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCF 258
             I   ++ I+     +IT+S GI+   +   + I   + +AD ALY AK+ GRN  +  
Sbjct: 461 IKIAQHEMPIAD----NITVSLGISYWDNNSNDTIKMTLKKADIALYQAKRQGRNCSIVH 516

Query: 259 S 259
           S
Sbjct: 517 S 517


>gi|163802198|ref|ZP_02196093.1| hypothetical protein 1103602000603_AND4_17439 [Vibrio sp. AND4]
 gi|159174003|gb|EDP58813.1| hypothetical protein AND4_17439 [Vibrio sp. AND4]
          Length = 815

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 90/189 (47%), Gaps = 11/189 (5%)

Query: 81  LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIV 132
           L+ YI     +        ++ +++  D L+ L N +  I+ L  + E         + +
Sbjct: 370 LINYICVFEDISVRKTHEEKLQRMAFYDPLTNLPNRTHLINLLEQHIENGHKNQHIFATL 429

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQE 191
           F D+D+FK IND+ GH  GD+++  L ++L  V      V R+GG+EF         E +
Sbjct: 430 FLDLDHFKHINDSMGHFCGDQLLTKLGERLQDVLHLRAHVARIGGDEFVVVLPNIDSESQ 489

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
                 D+  +  N    +S+  S+ I+ S G+A      +   T++  AD A+Y+AKK+
Sbjct: 490 LIDTIEDILSLF-NHPFEVSNNESLRISTSIGVARYPQDGQDSETLLKNADTAMYLAKKN 548

Query: 251 GRNRVVCFS 259
           GRN    +S
Sbjct: 549 GRNGYAFYS 557


>gi|148656630|ref|YP_001276835.1| diguanylate cyclase [Roseiflexus sp. RS-1]
 gi|148568740|gb|ABQ90885.1| diguanylate cyclase [Roseiflexus sp. RS-1]
          Length = 387

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 108/243 (44%), Gaps = 16/243 (6%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFY-----GLEYILVENLSLVIISITISLLLGY 84
            + +     IA +++  +  +  + +  +      G +   V    L+  ++ + L++  
Sbjct: 142 LYDLRRGALIAGIVYSLSFAIVVVQIVSWNMPGIDGEDSEHVLRAYLMGGALLVFLVVLA 201

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDID 137
           +  S ++ L   Y  ++ L+  D L+ L N                 Y ++  +  FD+D
Sbjct: 202 MYRSHIERLHTEYEVMANLAYTDTLTSLPNRRRLYEDVYRLIALAERYGQEFCVCLFDLD 261

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK++ND  GH VGD+V+  ++    +        GR GGEEF      +   +A     
Sbjct: 262 HFKRLNDTHGHLVGDQVLQEVAQVARLHLRAADLFGRWGGEEFVVLLPQTRLNDAQTALE 321

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +R  +    +         IT S GIA     +   ++++RADQALY+AK +GRNR+V 
Sbjct: 322 RVRLALHTIALPNVHA----ITASFGIAAYLPGDTSESLLHRADQALYLAKATGRNRIVL 377

Query: 258 FSD 260
            SD
Sbjct: 378 DSD 380


>gi|66047869|ref|YP_237710.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63258576|gb|AAY39672.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 828

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 19/234 (8%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS-------LLLGYIS-GSILKELF 94
            F A ++        + G      +N  L    +TIS       LL  +++  + +  L 
Sbjct: 319 AFYAAMWHQLAAEGHWQGEISNRRKNGELYPSWLTISAVRNKDNLLTHFVAVFADISSLK 378

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147
            +  R+   +  D L+GL N   F S L +            +++F D+D FK IND+ G
Sbjct: 379 QAQARLDYQAHHDPLTGLPNRILFESRLQAALLHSEESGSLGAVLFLDLDRFKHINDSLG 438

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206
           HPVGD ++  ++ +L         V RLGG+EF     G     +A  +AN L      S
Sbjct: 439 HPVGDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQTSDAQAIANKLLACF--S 496

Query: 207 QINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               +    ++I+ S G          ++T++  AD A+Y +K  GRNRV  ++
Sbjct: 497 TPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKAKGRNRVESYT 550


>gi|327191230|gb|EGE58273.1| putative sensory box GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 540

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 67/210 (31%), Positives = 104/210 (49%), Gaps = 15/210 (7%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYN----RISQLSRIDCLSGLLNHS 116
           L  IL     L+I++ T+ L+L      ++  L          +   ++ D L+GL N  
Sbjct: 306 LTRILALCAGLLILA-TLVLVLAARGLRLIDRLTQDREALVGELRNAAQTDLLTGLYNRR 364

Query: 117 AF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            F       ++     +  +S+V FD+D+FK+IND  GH  GD V+  ++      F + 
Sbjct: 365 GFEVAASALLTQAEHGSRWISVVLFDLDHFKKINDLNGHDAGDAVLRHVAGVARENFRSF 424

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
             + R GGEEF A    S+  +AA++A  +R  IE ++I + SG  + +T S G A R +
Sbjct: 425 DLLVRHGGEEFLALLPDSTPDDAAVVAERVRLAIEMAEIALPSGERLKVTASFGCAGRAN 484

Query: 230 K---EPISTIIYRADQALYVAKKSGRNRVV 256
                    ++ RAD ALY AK SGRN VV
Sbjct: 485 DGASRNFEDLVKRADLALYAAKASGRNCVV 514


>gi|193222219|emb|CAL60520.2| conserved hypothetical protein, putative PAS, PAC and GGDEF domains
           [Herminiimonas arsenicoxydans]
          Length = 619

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 13/227 (5%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR 99
           A+   +    L Y  + P  GL +   E     +   + +L  G+I+   + E       
Sbjct: 394 ASASSLLPWHLEYRVILPRQGLRWRQGEARPRRLPDGS-TLWHGFIT--DITERKRIEIE 450

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           +   + ID L+ L N   F++ +             + +++  D+D+FK IND++GH +G
Sbjct: 451 LQGFATIDFLTQLPNRRYFMTRMEEELARTRRIDGARTAVLMCDLDHFKTINDSYGHAIG 510

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+   +  L         VGR+GGEEFA     +   EA I A  +R  +    + I+
Sbjct: 511 DLVLKHFAVILRNALRRNDMVGRVGGEEFAVVLFDAGVAEAEIFAQRVRSQLAEIPL-IA 569

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +I++T+S GIA        I   + R+D ALY AK++GRNR+  
Sbjct: 570 LNQNINVTVSIGIAMMHASDANIDVSLSRSDTALYRAKQAGRNRIEI 616


>gi|157364110|ref|YP_001470877.1| diguanylate cyclase [Thermotoga lettingae TMO]
 gi|157314714|gb|ABV33813.1| diguanylate cyclase [Thermotoga lettingae TMO]
          Length = 170

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 83/167 (49%), Gaps = 11/167 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
              + ++S  D L+GL N       +         Y    S++  DID+FK++ND +GH 
Sbjct: 5   NEELERISITDKLNGLFNRYKMDEEMRKAFYLWKRYQRPFSLIMIDIDWFKKVNDTYGHQ 64

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GDKV+  L   L         V R GGEEF   +L   E+ A  LA  +R  IEN    
Sbjct: 65  IGDKVLQELGALLKKSLRASDIVSRWGGEEFLVLSLEIDEKGAITLAEKIRSEIENYSF- 123

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                +I IT+S G+    + E I  ++   D+ +Y+AK+SGRNRVV
Sbjct: 124 ---AENIKITVSIGVCSAKNHETIDELLVSVDEKMYIAKQSGRNRVV 167


>gi|254447598|ref|ZP_05061064.1| signaling protein with membrane-bound sensor domain and ggdef
           domain [gamma proteobacterium HTCC5015]
 gi|198262941|gb|EDY87220.1| signaling protein with membrane-bound sensor domain and ggdef
           domain [gamma proteobacterium HTCC5015]
          Length = 782

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 69/237 (29%), Positives = 106/237 (44%), Gaps = 12/237 (5%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV---IISITISLLLGYISG 87
           FS      +      A   L Y  L    G  + L     +         +SLL   + G
Sbjct: 544 FSGCLLSVVGLAYLSAFEVLPYAPLISVEGTAWQLSSPFWVASSYFFITFLSLLAFVLMG 603

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            ++    +    + QLS +D L+ + N  + +  L             +++V  DID+FK
Sbjct: 604 YVVSRWSLREAEVRQLSLVDPLTQIHNRLSIMQVLDQALSQHRREGSPIAVVMLDIDHFK 663

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            INDN+GHPVGD+++   +  L         +GR GGEEF     G+    A ++A   R
Sbjct: 664 AINDNWGHPVGDRILTSAASVLANNLREFDEIGRYGGEEFLLVLQGTDVDGAVVMAERCR 723

Query: 201 KIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + +   Q+    G SI ++ S G+A  +      I  +I RAD+ALY AK+ GRNRV
Sbjct: 724 QSLATIQVLSDEGASIGVSASFGVAASQAQQPTDIEALIQRADRALYRAKEKGRNRV 780



 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 60/266 (22%), Positives = 106/266 (39%), Gaps = 24/266 (9%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY----ILVENLSLVIISI 76
           +      + +  +   + +   +   +  L++   + F  + Y    +   + + V+  I
Sbjct: 108 ALIGAPLVGFLLLERRVVVVAFLVSFSTLLYFNFASAFDWMPYAPLMVEPRDRASVLAWI 167

Query: 77  TISLLLGY--------ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125
              L            ++  IL +  +      + S  D L+G+ N  +    L      
Sbjct: 168 NTHLFFAAPHIFFQVAVAALILGQWRLREAEAIRQSLTDALTGIHNRRSLFQILDRQVAH 227

Query: 126 ----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                E L++   D+D+FK+IND +GHP GD  +   +  L         VGR GGEEF 
Sbjct: 228 AHKQEEPLAVALLDLDHFKRINDEYGHPTGDAALKAAAAVLEKGLSEGDSVGRFGGEEFM 287

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTII 237
                 S  +       LRK +E  +    +G +I +  S G+     +         ++
Sbjct: 288 LVMPNCSRSQCQQRCEALRKSLERVECYSENGEAIALRGSFGVVWYSGQSQRPLVSDGVV 347

Query: 238 YRADQALYVAKKSGRNRVVCFSDIEN 263
             AD ALY AK +GRN+VV   DI++
Sbjct: 348 QVADAALYRAKNAGRNQVVL-QDIDD 372


>gi|15604107|ref|NP_220622.1| response regulator PleD [Rickettsia prowazekii str. Madrid E]
 gi|3860799|emb|CAA14699.1| unknown [Rickettsia prowazekii]
 gi|292571833|gb|ADE29748.1| Regulatory components of sensory transduction system [Rickettsia
           prowazekii Rp22]
          Length = 450

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 62/189 (32%), Positives = 87/189 (46%), Gaps = 13/189 (6%)

Query: 81  LLGYISGSILKELFISYNR--ISQ---LSRIDCLSGLLNHSAF-------ISSLGSYNEK 128
           LL  I   + ++ +    R  + Q   L+  D L+GL N   F       I      N K
Sbjct: 260 LLARIRTQLRRKQYQDNLRNDLEQSVNLAAKDGLTGLFNRRYFDIHLKQMIEKANKENIK 319

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L ++  DID FK +ND +GH  GDKV+  +S  L         + R GGEEF        
Sbjct: 320 LYLLMCDIDNFKHVNDTYGHQAGDKVLTTVSRILKNTLRVTDLIARFGGEEFTILLTDID 379

Query: 189 EQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVA 247
             +A   A  +R  IE     I      +  TIS G+ E   +E I + I RAD+A+Y A
Sbjct: 380 ISKAIETAERVRVKIEYMDFYIEGQIEPLKKTISIGVTEYKKEESIESFIKRADKAMYEA 439

Query: 248 KKSGRNRVV 256
           K +G+N+VV
Sbjct: 440 KTTGKNKVV 448


>gi|320354834|ref|YP_004196173.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Desulfobulbus propionicus DSM 2032]
 gi|320123336|gb|ADW18882.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfobulbus propionicus DSM 2032]
          Length = 1093

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 57/216 (26%), Positives = 87/216 (40%), Gaps = 18/216 (8%)

Query: 64  ILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +  E L++  I   +  +  YI     + EL      +   ++ D L+ L N       L
Sbjct: 609 VYPEWLTISAIRNPLGRVTHYIGLFHDITELKRQQEALEHQAQHDALTNLPNRVLLNDRL 668

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     + K +++F D+D+FK IND FGH  GD ++  LS +L         + R 
Sbjct: 669 AMALARMKRKSVKAALLFLDLDHFKNINDGFGHVAGDNLLVELSRRLKEQLRIGDTLARQ 728

Query: 176 GGEEFAAAALGSSEQE-----AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
           GG+EF          +     A  L N LR+   +  I    G SI +TI          
Sbjct: 729 GGDEFLILLPEVDSVDDVGLVALRLLNSLRQPFHHQDIEYFIGASIGVTI-----APDDG 783

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
               T+I  AD A+Y AK+ GRN    F+   +   
Sbjct: 784 TDADTLIKNADMAMYRAKQLGRNNYQFFTPELDAQA 819


>gi|89092410|ref|ZP_01165364.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL)
           [Oceanospirillum sp. MED92]
 gi|89083498|gb|EAR62716.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL)
           [Oceanospirillum sp. MED92]
          Length = 594

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 87/214 (40%), Gaps = 13/214 (6%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G  ++L   ++L         ++G I    + E     +++   +  D L+GL N +  +
Sbjct: 120 GYVWVLAHGMALRNDQNIAYRMVGSIG--DITEQKEYQDKLLHQATYDHLTGLPNRALAL 177

Query: 120 SSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L             + ++F D+D FK+IND  GH VGD  +  +S++L   F     +
Sbjct: 178 DRLSVAISRSRRNKTSVGLLFVDLDNFKKINDTLGHEVGDLHLKEISNRLGYCFREEDTI 237

Query: 173 GRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
            RLGG+EF        S ++   +   +       Q    +G     + S G+       
Sbjct: 238 ARLGGDEFLVILPDLDSPKQVEEVCERILAT--AMQPVTINGYEFSTSASIGVTIYPDDG 295

Query: 232 -PISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
              S ++  AD A+Y AK  G++    F+   + 
Sbjct: 296 YEPSGLLRNADAAMYQAKAQGKDTFCFFTPEMDQ 329


>gi|311696313|gb|ADP99186.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [marine bacterium HP15]
          Length = 759

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 10/182 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S +  L     ++  ++  D L+G+ N   F   L          + KL++V+ D+D FK
Sbjct: 576 SDISRLKEQERKLRIMAHYDALTGMPNRVLFADRLQQAMALTRRQSGKLAVVYIDLDEFK 635

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND FGH  GD+++  ++ ++         + R+GG+EFAA  +   +  A      +R
Sbjct: 636 PVNDAFGHEAGDQLLVEIAHRMRSELREEDTLARIGGDEFAAIVMNVQDDPALESL-LMR 694

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCF 258
            +   ++    +  S+ ++ S G       E +    ++ +ADQA+Y AK  GRNR V F
Sbjct: 695 LLARVAEPVWVADHSVEVSASIGYTLFPQAEDLDGDQLLRQADQAMYQAKHRGRNRYVRF 754

Query: 259 SD 260
           SD
Sbjct: 755 SD 756


>gi|237653319|ref|YP_002889633.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Thauera sp. MZ1T]
 gi|237624566|gb|ACR01256.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Thauera sp. MZ1T]
          Length = 1251

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 90/188 (47%), Gaps = 12/188 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           + + +     +R+  ++  D L+GL N           ++      ++L++ + D+D FK
Sbjct: 798 TDITQQKEHESRLEYIAHYDALTGLPNRVLLSDRMQRGMAQARRRGQQLALAYIDLDGFK 857

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH  GD+++A ++ ++         + RLGG+EF A  L   + EA  L   +R
Sbjct: 858 AINDTLGHQAGDQLLAVVAARMKAALREGDSISRLGGDEFVALLLDLPDVEACELL--VR 915

Query: 201 KII-ENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
           +++   SQ    +G  + ++ S G+      E      ++ +AD A+Y AK +G+NR   
Sbjct: 916 RLLGAVSQAVQLAGQEVKVSASIGLTLYPQAEEVDADQLLRQADLAMYQAKLAGKNRYHL 975

Query: 258 FSDIENNT 265
           F    + +
Sbjct: 976 FDTAHDRS 983


>gi|212633447|ref|YP_002309972.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212554931|gb|ACJ27385.1| GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 322

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 105/235 (44%), Gaps = 18/235 (7%)

Query: 40  ATVIFIANIFLF-YIGLTPFYGLEYILVENLSLVIISIT------ISLLLGYISGSILK- 91
           A + +    F+F +    P  G    + +N++L+ +S        +S+++  ++   +  
Sbjct: 83  AFISWEQRPFIFQFKNYRPITGRADFMYQNVTLLPLSSLTGEVTHLSMIVYDVTDVAINK 142

Query: 92  -ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
            +L      +  LS+ID L+ L N   +             Y ++ ++V  DID FK IN
Sbjct: 143 LQLKAVNESLEVLSQIDGLTQLYNRRHWQLCMQKEFDRNSRYGDETTLVMLDIDNFKLIN 202

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GDKVI  +S  +          GR GGEEF      +    A   A  LRK +
Sbjct: 203 DTYGHQAGDKVIQNVSHLIKKSLRETDCAGRYGGEEFGVVLANTPAANALFFAERLRKKV 262

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           E S+  +     I +TIS GI +   +       +  ADQALY AK+SGRN    
Sbjct: 263 EQSE-TVFDEQIIKVTISIGICDIQPEVLTSEAWLCLADQALYQAKESGRNSCAI 316


>gi|220933268|ref|YP_002512167.1| diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994578|gb|ACL71180.1| diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 444

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 10/179 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
           L  S   + +LS  D L+GL N  AF  ++         + +  S++  D+D FK +ND 
Sbjct: 254 LQHSNLELERLSLTDPLTGLGNRRAFDQNIEADMALFRRHGDISSLLVLDLDCFKGLNDT 313

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH +GD V+   +D L         V RLGGEEFA     + E  A  +A  LR+ +E 
Sbjct: 314 HGHDIGDLVLCQFADVLQGHARETDEVCRLGGEEFAVFLRRADEDGAMAMAEKLREAVEA 373

Query: 206 SQINISSGPSIHITISAGIAERCHK---EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +N+     I +T+S G+A    +        +   ADQA+Y +K++GRNRV  +  +
Sbjct: 374 MVVNVDDALKISVTVSIGVATLSTRLRITSALALYKAADQAMYASKQAGRNRVTHYDSL 432


>gi|77918534|ref|YP_356349.1| sensory box protein [Pelobacter carbinolicus DSM 2380]
 gi|77544617|gb|ABA88179.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pelobacter carbinolicus DSM 2380]
          Length = 1063

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 8/182 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           S   + +   +  +I +L+  D L+GL N +     +          N+ ++++  D+D 
Sbjct: 610 SAIDITDKRKTELQIKKLAYFDSLTGLPNRTLLKDHMELALGQARRLNKFVAVLLLDLDN 669

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND  GH  GD +I  ++++L     T   + R GG+EF        + +    A +
Sbjct: 670 FKHINDTLGHATGDLLIRSVAERLRTECRTCDTLARWGGDEFVLLLTDLDDIQNTTSATE 729

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
               +   +   +S   I+ T S GIA      +   T++ RAD A+Y AKK+GRN    
Sbjct: 730 KFMALLTERPFATSECDINTTASIGIALYPQDGQDPETLLKRADTAMYEAKKNGRNGYHF 789

Query: 258 FS 259
           FS
Sbjct: 790 FS 791


>gi|323497745|ref|ZP_08102760.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
 gi|323317221|gb|EGA70217.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
          Length = 345

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 120/242 (49%), Gaps = 13/242 (5%)

Query: 30  YFSIFFSIFIATV-----IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           + ++F  +F   +     +         I LT  Y +      + + + ++ +++ L  +
Sbjct: 99  WAALFPVLFYLILGKRRGMLATGAGFLTILLTVCYKIFVCTFIDSAHLAVNFSLTFLCIW 158

Query: 85  ISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDY 138
           ++  IL+ +   S   + QL+  D L+G+ N  A + +   Y++      LS++  D+DY
Sbjct: 159 LTSHILEVKRKTSEASLGQLASRDSLTGVYNRHALVHNFKRYHDESNKVPLSLLILDLDY 218

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND +GH VGDKV+   +  L         V R+GGEEF  A      Q A   A  
Sbjct: 219 FKQVNDQYGHDVGDKVLIETAALL-DALSDEHLVYRIGGEEFCIALHDCDLQHARHKAEL 277

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +R  IE  + +     +I +T S G+ +  H + + +++  AD+ LY AKK+GRN+V+  
Sbjct: 278 IRHTIERYEFS-GGEEAIKLTASIGVYQCHHFDSLESVLKEADKELYRAKKNGRNQVMVC 336

Query: 259 SD 260
           ++
Sbjct: 337 NE 338


>gi|254293180|ref|YP_003059203.1| diguanylate cyclase/phosphodiesterase [Hirschia baltica ATCC 49814]
 gi|254041711|gb|ACT58506.1| diguanylate cyclase/phosphodiesterase [Hirschia baltica ATCC 49814]
          Length = 732

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 11/228 (4%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
           I     +   L     + + L   L + +I   IS L    + ++  ++  S+    +L+
Sbjct: 237 IVGWLSWQRHLPGITAIRHFLPTILLVAVIIGIISFLAWKRATALSNDIIFSHQEAQKLA 296

Query: 105 RIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
             D L+GL N       +           E  ++   D+D FK IND  GHP GD++I  
Sbjct: 297 LHDPLTGLANRMLLKKQIETAKADVKRGREGFALHLIDLDKFKDINDTMGHPAGDELIRQ 356

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSI 216
            + +L         V R+GG+EFA   +  +S    + LA  + + +  +   + +   +
Sbjct: 357 AATRLKDACRANDTVARIGGDEFAVIQIEATSTNTVSRLARRINEQMARA--FVINNTEV 414

Query: 217 HITISAGIAERCHKEPISTII-YRADQALYVAKKSGRNRVVCFSDIEN 263
           +++ S GIA     E     I  RAD ALY AK++GR++   F D  +
Sbjct: 415 YVSASIGIAIDATGESQQEEIHRRADIALYKAKEAGRDQYCFFEDEMD 462


>gi|168820670|ref|ZP_02832670.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205342731|gb|EDZ29495.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
          Length = 353

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 127/266 (47%), Gaps = 28/266 (10%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY------GLEYILVE----- 67
           + S+  + F++++ + F+  ++ ++ +  +   Y  L           L  +L       
Sbjct: 87  MWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLWLTALLASVQLNQ 146

Query: 68  --NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDCLSGLLNH 115
             N+  +++ +T++ +L Y   I      E ++ Y        R+  ++  D L+G  N 
Sbjct: 147 YVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANR 206

Query: 116 SAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MF 171
            +  S LG      E  +++  D+DYFK  ND++GH  GD  +A ++  +     TP   
Sbjct: 207 RSMESFLGDALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVACVVKRSIRTPADL 266

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHK 230
           V R GGEEF      SS  EAA++A  ++  +  + +  ++   S  +T+S GI      
Sbjct: 267 VARYGGEEFVVVLPSSSLNEAALVAQRIQTNLRETALPHAASAVSETVTVSMGITLSTAG 326

Query: 231 EPISTIIYRADQALYVAKKSGRNRVV 256
           + ++ II RAD+ALY AK+ GRNR V
Sbjct: 327 DTVTGIIARADEALYRAKQQGRNRWV 352


>gi|189424128|ref|YP_001951305.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
 gi|189420387|gb|ACD94785.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
          Length = 1027

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 11/186 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E   +   I  L+  D L+ L N       L         +   +++++ D+D FK 
Sbjct: 584 DINERKNAEATIEHLAYFDPLTDLPNRRMLQDRLELALRRSRRHGSNVALMYLDLDSFKH 643

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLR 200
           +ND+ GHP GD ++  ++ +   V      V RLGG+EFA        +Q+   +A  L 
Sbjct: 644 VNDSMGHPAGDLLLKEMAGRFSGVVRDDDVVCRLGGDEFALILHDIHQDQDVVPIAQKLI 703

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +   Q     G  + +T S GIA        +  +   AD ALY AK+ G+N    + 
Sbjct: 704 EAVA--QPVPLDGREVVVTASIGIALFPRDGGDVKNLEKHADIALYHAKEEGKNTFRFYL 761

Query: 260 DIENNT 265
           +  N+T
Sbjct: 762 EELNST 767


>gi|77918711|ref|YP_356526.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77544794|gb|ABA88356.1| response regulator receiver modulated diguanylate cyclase
           [Pelobacter carbinolicus DSM 2380]
          Length = 323

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 15/176 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQI 142
           +  L  + +++++++  D L+GL N + F +               LS++  D+D+FK+I
Sbjct: 129 IHALHQAQSQLARIALTDSLTGLYNRAYFDATITQEVARCSRRGLPLSLLMVDLDHFKKI 188

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD+ +A ++  L         V R GGEEFA     ++   AA +A  +RK 
Sbjct: 189 NDTYGHLAGDQALAAVALVLKEQSRISDTVCRFGGEEFAVILPETTNANAATVAERIRKK 248

Query: 203 IENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           I    +         +T S G+  A+  ++     +I  AD ALY AK  GRNRV 
Sbjct: 249 ISQLDLAFP------VTASIGVGSAKVTNQLLPDHLIAEADGALYEAKSQGRNRVQ 298


>gi|312173911|emb|CBX82165.1| Heme-regulated cyclic AMP phosphodiesterase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 818

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 58/211 (27%), Positives = 95/211 (45%), Gaps = 19/211 (9%)

Query: 73  IISITISLLLG--------YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           IIS + S++ G         +    + +   +  RI  ++  D L+ L N   F   L  
Sbjct: 361 IISASASMVRGKDARHSYVLLIADDVTDQRAADARIHHMAHHDNLTSLPNRVLFNQHLTT 420

Query: 123 ----GSYNEKL-SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                   ++L +++  D+D FK +ND  GH VGD ++  ++ +L  V      + R GG
Sbjct: 421 ALREDRDAQRLTAVLGLDLDNFKNVNDALGHQVGDALLCSVAVRLRSVLRNRDTLARNGG 480

Query: 178 EEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPIST 235
           +EF+    G S  +EA  +A  L + I         G ++ I +S GI    H       
Sbjct: 481 DEFSIVLPGLSHPEEAEAMARRLIETIR--PPFTVHGHNLSIGLSIGITLAQHGMTSPDY 538

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           ++  AD ALY AK++GRNR   F+    +T 
Sbjct: 539 LLRCADMALYAAKRNGRNRFEHFTKAMGDTA 569


>gi|300868498|ref|ZP_07113117.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
 gi|300333487|emb|CBN58305.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
          Length = 691

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 11/177 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIN 143
           +EL  +   + +++ ID L+ L N   F  +L             LS++  DID+FK  N
Sbjct: 512 QELEAANRELQRIASIDGLTQLANRRCFDETLEREWRRMARERSPLSLILCDIDFFKLYN 571

Query: 144 DNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D++GH  GD+ +  ++               R GGEE A     +  + A  +A  +R  
Sbjct: 572 DSYGHQGGDECLKEVAKIFYQNARRGGDLAARYGGEELALILPLTDAKGALKVAEIIRSD 631

Query: 203 IENSQINI-SSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++   I   +S  S ++T+S GIA     H+     +I  AD+ALY AK  GR+RV 
Sbjct: 632 LQARAIPHAASNVSKYVTLSMGIATVVPTHESSFEALITAADRALYRAKAGGRDRVA 688


>gi|323528765|ref|YP_004230917.1| diguanylate cyclase [Burkholderia sp. CCGE1001]
 gi|323385767|gb|ADX57857.1| diguanylate cyclase [Burkholderia sp. CCGE1001]
          Length = 506

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 101/218 (46%), Gaps = 16/218 (7%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L  +  L +++   LS   IS     ++  ++ + L++  ++ +R+++L++ D L+GL N
Sbjct: 286 LASWRTLAWMV--GLSACAISFAFCAVVWLLAFA-LRDRALAGDRLTELTQTDPLTGLKN 342

Query: 115 HSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVF 166
             A           L   +  LS++F D D+FKQ ND +GH  GDK +  L+ ++   V 
Sbjct: 343 RRALDEVLQNEWDRLQRNDSHLSVLFVDADHFKQYNDQYGHAEGDKALKHLAARIVQRVH 402

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS---QINISSGPSIHITISAG 223
                V R GGEEF      +    A  +A  +R+ +E+S        S      T+S G
Sbjct: 403 RRGDCVARYGGEEFVVVLPDTDAAGAYRVAEGIREQLESSWQTGREAGSAAVHPFTVSIG 462

Query: 224 IAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            A   R        +   AD ALY AK +GRN V   S
Sbjct: 463 CATGRRASPSTCEELTKAADIALYEAKSAGRNCVRAAS 500


>gi|146308192|ref|YP_001188657.1| diguanylate cyclase [Pseudomonas mendocina ymp]
 gi|145576393|gb|ABP85925.1| diguanylate cyclase [Pseudomonas mendocina ymp]
          Length = 518

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 57/188 (30%), Positives = 85/188 (45%), Gaps = 13/188 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           +EL  +  R+  L+  D L+GL N  +F  +L             LS++  DID FK+ N
Sbjct: 321 EELLDANARLEVLASQDALTGLANRRSFDQTLEVEIRRAQRRGSPLSLMLLDIDLFKRYN 380

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD  +  ++D L      P     R GGEE A        + A  +A    + 
Sbjct: 381 DRYGHVAGDACLRAVADVLRQCMRRPGDLAARYGGEELAVILPNVDIEGAQTVARTFMQA 440

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPIST-----IIYRADQALYVAKKSGRNRVVC 257
           +E   +     P   +T+SAG+A        S+     +I  ADQALY AK +GRNR+ C
Sbjct: 441 LEQRHLAHQGSPFQRVTVSAGVASLVPDAGDSSAQALALIRAADQALYRAKSNGRNRLEC 500

Query: 258 FSDIENNT 265
                 ++
Sbjct: 501 AESPRQDS 508


>gi|114777426|ref|ZP_01452423.1| GGDEF/response regulator receiver domain protein [Mariprofundus
           ferrooxydans PV-1]
 gi|114552208|gb|EAU54710.1| GGDEF/response regulator receiver domain protein [Mariprofundus
           ferrooxydans PV-1]
          Length = 277

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 54/204 (26%), Positives = 89/204 (43%), Gaps = 20/204 (9%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
            +  L   +   I+  +  + + +   +  D L+GL N    +  L         Y    
Sbjct: 74  IVGGLEARLIWRIISNMKDAQSELHFQASHDVLTGLYNRRYMMEQLYQGVSQATRYRHPY 133

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +IV  D+D FKQ+ND +GH  GDKV++ ++  L          GR GGEEF      +  
Sbjct: 134 AIVVMDLDRFKQVNDIYGHAAGDKVLSTMAGILRESVRDADIAGRWGGEEFLVLLPHTDL 193

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-------------KEPISTI 236
             A   A    K +  + + +  G SI ++ SAG+A                  + + T+
Sbjct: 194 DGARQAAEQWLKRVLATPLGVGGGKSIQVSFSAGVAMFDPVNGRPAVKQALNIDQQVETL 253

Query: 237 IYRADQALYVAKKSGRNRVVCFSD 260
           ++ AD+ +Y+AK SGR+ VV   D
Sbjct: 254 LHLADKRMYLAKDSGRSCVVVSGD 277


>gi|307131184|ref|YP_003883200.1| sensory box/GGDEF family protein [Dickeya dadantii 3937]
 gi|306528713|gb|ADM98643.1| Sensory box/GGDEF family protein [Dickeya dadantii 3937]
          Length = 752

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 104/237 (43%), Gaps = 17/237 (7%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSL--VIISITISLLLGYISGS------- 88
            I   +F+  +       T  +    I +E  +L   +I   +++ + +++         
Sbjct: 249 IIVPDMFVVQLHHLATDKTAIFKGSSIELETRALPGTLIPTELTVSMWHVNNQTRYGIIL 308

Query: 89  -ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQIND 144
             + E      R+   +  D L+GL N +   S+L       E  +I+  D+D FK IND
Sbjct: 309 RDITERQRYEERLFLQAHRDPLTGLANRTLLTSTLEQVLKNGEPTAIMIIDLDGFKDIND 368

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
           + GH  GD++++ ++ +L     +   V R+GG+EFA      + E + A LA  +  I 
Sbjct: 369 SLGHASGDEILSSVAKRLQGNVCSGDLVARMGGDEFAILLPKQNDESQVAKLAEKI--IY 426

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + SQ        I+ + S G+     H   +  ++  AD ALY AK  GRN    F+
Sbjct: 427 DISQAVPVDDKQINTSASIGLVMYPAHGTTVQDLLTSADLALYQAKADGRNCYRFFT 483


>gi|88811676|ref|ZP_01126930.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) and Response Regulator
           [Nitrococcus mobilis Nb-231]
 gi|88791067|gb|EAR22180.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) and Response Regulator
           [Nitrococcus mobilis Nb-231]
          Length = 818

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 11/186 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
              + E       ++  +  D L+ L N S  +  +         YN ++ ++F D+D F
Sbjct: 368 ARNISERKRLEEELAYRASHDALTCLPNRSLLLDRMQQALAYARRYNHRVGVLFVDLDRF 427

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K+IND  GH  GD ++  +++++         V R GG+EF   A       + A + + 
Sbjct: 428 KRINDTLGHHAGDTILRTVAERICQGVRRSDTVSRHGGDEFVVIAAQVFDSNDLASIVSK 487

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +RK +    I + +   + +T S GIA      E   T++  AD A+Y AK++GRN    
Sbjct: 488 IRKTVSE-PIKVKN-RQVVLTCSIGIALYPFDGEDTDTLLKNADTAMYQAKENGRNDFQY 545

Query: 258 FSDIEN 263
           ++   N
Sbjct: 546 YTKEMN 551


>gi|120553201|ref|YP_957552.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120323050|gb|ABM17365.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 339

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 66/245 (26%), Positives = 105/245 (42%), Gaps = 14/245 (5%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           P  F +Y  +  + F+        I L  I      GL +   E +     +  +     
Sbjct: 89  PGLFWLYPCLVTTFFLVGPRIAVGINLSAILAMMVVGLAFSSQEQMWSFSTTAVVVSACA 148

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
           Y+             R+ QL+ ID L+G+ N  +    L              ++V  DI
Sbjct: 149 YVFA---HRNHSQRRRLEQLATIDPLTGVKNRRSMDEELDVAAANAERSGLPYALVLLDI 205

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND +GH VGD V+  L   L         + R GGEEF     G        + 
Sbjct: 206 DHFKKINDEYGHGVGDDVLTELVALLESNTRRSDQLFRYGGEEFVLLLPGVDGVNLRAVM 265

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           N+L++++    +    GP   +T S G+A   H E + + + RAD ALY AK++GR+R+V
Sbjct: 266 NNLQQVLRKY-LKHPGGP---VTASFGVALLGHGESVDSWLARADNALYTAKETGRDRIV 321

Query: 257 CFSDI 261
              ++
Sbjct: 322 YAEEV 326


>gi|302537100|ref|ZP_07289442.1| membrane associated phosphodiesterase [Streptomyces sp. C]
 gi|302445995|gb|EFL17811.1| membrane associated phosphodiesterase [Streptomyces sp. C]
          Length = 987

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 84/193 (43%), Gaps = 16/193 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           ++   + E      ++   +  D L+ L N + F   +          +   +++F D+D
Sbjct: 491 LNSRDVTERVRLQAQLQHSAEHDPLTDLPNRALFTRRVRQALTGRRAGDHSTAVLFIDLD 550

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE------ 191
            FK +ND  GH  GD+++   + +L           RLGG+EFAA  LG   ++      
Sbjct: 551 GFKAVNDTIGHQAGDELLVEAARRLQDAVRAGDTAARLGGDEFAALILGDGSRDRSAREC 610

Query: 192 -AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
               +A+ LR  +  SQ    +G  + +  S G+A        S ++  AD A+Y AK  
Sbjct: 611 QVHDIADRLRATL--SQPYRIAGSEVRVAASIGVAFADPGITPSDLMRNADLAMYRAKAG 668

Query: 251 GRNRVVCFSDIEN 263
           G++RV  ++    
Sbjct: 669 GKDRVELYAPQMQ 681


>gi|238650401|ref|YP_002916253.1| response regulator PleD [Rickettsia peacockii str. Rustic]
 gi|238624499|gb|ACR47205.1| response regulator PleD [Rickettsia peacockii str. Rustic]
          Length = 450

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 89/191 (46%), Gaps = 13/191 (6%)

Query: 79  SLLLGYISGSILKELFISYNR--ISQ---LSRIDCLSGLLNHSAFISSLGSYNEK----- 128
           S LL  I   + ++ +    R  + Q   L+  D L+GL N   F   L    EK     
Sbjct: 258 SELLARIRTQLRRKQYQDNLRNDLEQSVNLAVKDGLTGLFNRRYFDIHLKQIIEKTNKES 317

Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             L ++  DID FK +ND +GH  GDKV+  +S  L         + R GGEEF      
Sbjct: 318 IKLYLLMCDIDNFKHVNDTYGHQAGDKVLTIVSRILKNTLRVTDLIARFGGEEFTILLTD 377

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALY 245
               +A   A  +R  IE    +I      +  TIS G+ +   +E I + I RAD+A+Y
Sbjct: 378 IDISKAIETAERVRIKIEYMNFHIEDQIEPLKTTISIGVTKYKKEESIESFIERADKAMY 437

Query: 246 VAKKSGRNRVV 256
            AK +G+N+VV
Sbjct: 438 EAKTTGKNKVV 448


>gi|149180252|ref|ZP_01858757.1| sensory box protein/GGDEF domain protein [Bacillus sp. SG-1]
 gi|148852444|gb|EDL66589.1| sensory box protein/GGDEF domain protein [Bacillus sp. SG-1]
          Length = 706

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 10/187 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDI 136
           Y +   + +  +   ++ +L+  D L+ L N   F   LG          +  S++F D+
Sbjct: 262 YGTARDITKKKLYDEKMRELAFYDPLTRLPNRKLFEDRLGQIIKLAKIEEKLFSVIFLDL 321

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK IND+ GH +GD+ +  ++D+L     +   + RL G+EF       +E++   +A
Sbjct: 322 DRFKFINDSMGHHIGDEFLKLVADRLKQSIRSTDTLSRLAGDEFTILLPDITEEDVISIA 381

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             + + +   +    SG  + ++ S GIA    K   +S II+RAD A+Y  KK  R++ 
Sbjct: 382 ERINQSLA--EPFQVSGHWLSVSASIGIAFSTGKNVGVSEIIHRADTAMYQTKKFRRSQY 439

Query: 256 VCFSDIE 262
             +SD  
Sbjct: 440 TIYSDEM 446


>gi|53804441|ref|YP_113700.1| sensory box protein [Methylococcus capsulatus str. Bath]
 gi|53758202|gb|AAU92493.1| sensory box protein [Methylococcus capsulatus str. Bath]
          Length = 712

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 11/188 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           +   + +   + +RI  L+  D L+ L N           I        +++++F D+D 
Sbjct: 265 AFRDITQRREAEDRIKHLAHHDPLTNLPNRVFLHGRLEQAIELARREQNQVAVMFIDLDN 324

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILAN 197
           FK+IND  GH +GD ++  ++ +L         VGRLGG+EF     G+     +A +A 
Sbjct: 325 FKRINDTLGHRIGDALLEQVAARLTENVPGSQVVGRLGGDEFIVVITGNRVSTTSAAMAE 384

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            + + +   +        +H   S GIA          T++  AD A+Y AK  GRN   
Sbjct: 385 RILESL--CRPYTVEDYQLHSGASIGIAIYPADGNSAETLMKHADAAMYHAKSRGRNTFE 442

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 443 FFSQAINR 450


>gi|17227715|ref|NP_484263.1| hypothetical protein all0219 [Nostoc sp. PCC 7120]
 gi|17135197|dbj|BAB77743.1| all0219 [Nostoc sp. PCC 7120]
          Length = 585

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 82/189 (43%), Gaps = 12/189 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDI 136
           I+   + +  ++  R+   +  D L+GL N   FI  L           +   +++F D+
Sbjct: 129 INSRDITDRKLAEERLVHDALHDVLTGLPNRVLFIDRLRRAVEYAKRYSDHLFAVLFLDL 188

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAIL 195
           D FK IND+ GH +GD+++  ++ +L+          R GG+EF     G     +   +
Sbjct: 189 DRFKFINDSLGHTIGDQLLVIIAQRLIECLRPTDIAARFGGDEFIILLEGIQDISDTVRV 248

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
              +++ +      + SG  I  T S GI+      E    ++  AD A+Y AK  G+  
Sbjct: 249 VERIQEKL--LVPVVLSGHEIFTTASIGISLSATGYEQPEDLLRNADIAMYRAKARGKAC 306

Query: 255 VVCFSDIEN 263
              F+   +
Sbjct: 307 YEIFNSDMH 315


>gi|317052702|ref|YP_004113818.1| diguanylate cyclase [Desulfurispirillum indicum S5]
 gi|316947786|gb|ADU67262.1| diguanylate cyclase [Desulfurispirillum indicum S5]
          Length = 423

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 59/179 (32%), Positives = 87/179 (48%), Gaps = 11/179 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDY 138
           +   + EL     ++   +  D L+G  N   F             Y + L+ V FDID+
Sbjct: 236 TAMDVNELKQLQMQMEIFATTDMLTGCYNRRKFEDIFRVETERARRYRQPLAAVLFDIDH 295

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND  GH VGD V+  L+  +        ++ R GGEEF   A  ++ ++   LA  
Sbjct: 296 FKQVNDTHGHNVGDDVLRTLAALVRGSLRPSDYLVRWGGEEFLVLATETNARQGGHLAQR 355

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +R++IE S+          +TIS G+ E    + + T I RAD ALY+AK  GRNRV  
Sbjct: 356 IRRLIERSEFAAVG----TVTISLGVTEFVSDDELHTFIKRADDALYLAKNKGRNRVEV 410


>gi|34499692|ref|NP_903907.1| GGDEF family protein [Chromobacterium violaceum ATCC 12472]
 gi|34105543|gb|AAQ61897.1| probable GGDEF family protein [Chromobacterium violaceum ATCC
           12472]
          Length = 490

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 105/227 (46%), Gaps = 19/227 (8%)

Query: 46  ANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE---------LFIS 96
            N +L    L P  G   ++ +N +L +  +  +L +     + +           L   
Sbjct: 254 GNRYLLTSRLLPELGWHLLVEQNETLALQPLHAALQVNLAINTTILLLVLIAVLATLQHY 313

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
             R+ QL+  D L+G LN  AF+  L            +  ++  DID+FKQ+ND  GH 
Sbjct: 314 QRRMRQLATTDPLTGCLNRLAFLDLLPGWLRACERTGAEPQLLMIDIDHFKQVNDKHGHQ 373

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD+V+  ++D L         + R GGEEF        E +A  LA  LR  +    ++
Sbjct: 374 IGDQVLREIADLLRSQLRGSDLLIRWGGEEFVVLVGSHGEDDA--LAERLRTAVARHVMS 431

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +SG  + +T+S G+ +    E +   + RAD ALY AK+ GRNRV 
Sbjct: 432 -ASGKRLTVTVSLGLCQWLPPETLEAAVARADLALYAAKQGGRNRVC 477


>gi|307610059|emb|CBW99594.1| hypothetical protein LPW_13641 [Legionella pneumophila 130b]
          Length = 792

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 10/174 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R++  +  D L+GL N +A    L          N  LS++F DID FK IND+ GH  G
Sbjct: 352 RLAYQANHDSLTGLPNRTALYDRLDHAINYCKRLNTSLSVLFLDIDNFKLINDSLGHDAG 411

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++   S +L         V R GG+EF    + +  ++  ++A ++ K +    I + 
Sbjct: 412 DILLYEFSRRLKGCIRHSDTVARFGGDEFVLLLMTTEPKDVILVAQNILKAVAQ-PIKLP 470

Query: 212 SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +   + +T S GI+         ST++  +D A+Y+AKK GRN    +++  N 
Sbjct: 471 T-QEVIVTTSIGISLFPKDGIDASTLLKNSDTAMYLAKKEGRNNFQFYNNSINQ 523


>gi|157375319|ref|YP_001473919.1| diguanylate cyclase with PAS/PAC sensor [Shewanella sediminis
           HAW-EB3]
 gi|157317693|gb|ABV36791.1| diguanylate cyclase with PAS/PAC sensor [Shewanella sediminis
           HAW-EB3]
          Length = 305

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 89/188 (47%), Gaps = 10/188 (5%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLS 130
           ++ L+G I    +       +++++ +  D L+GL N                     L+
Sbjct: 121 VAGLIGIIF--DITAQKQLESKLTEQATYDSLTGLYNRREGLNRVGELYELTRRNKMPLA 178

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D+FK++ND +GH VGD+ + F+++ L         + R GGEEF       +E 
Sbjct: 179 VLMLDVDHFKRVNDQYGHQVGDQALHFIANTLRQTSRKSDVLVRYGGEEFLIFLPNVAEG 238

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +A   A   R  +    + +S    +H+T+S GI+     + ++ +I+ AD ALY AK  
Sbjct: 239 DAITFAERYRTALAKKAMRLSKSQRLHLTVSIGISCYRQ-QTLTDLIHEADIALYEAKSR 297

Query: 251 GRNRVVCF 258
            RN V  +
Sbjct: 298 DRNTVCSY 305


>gi|89094508|ref|ZP_01167447.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor [Oceanospirillum sp. MED92]
 gi|89081244|gb|EAR60477.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor [Oceanospirillum sp. MED92]
          Length = 402

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 17/198 (8%)

Query: 72  VIISITISLLLGYISGSILKE----LFISYNRISQLSRIDCLSGLLNHSAF-------IS 120
           V+I    +  LG I   ++++       +  +IS  +  D L+ L N   F       I 
Sbjct: 209 VVIFTLFAFSLGTIMLILIRQIMNSREQAIEKISYFANYDPLTDLFNRRHFFDQFNLAIR 268

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                N  LS+   D+D+FK++ND  GH  GD ++   ++ L        FVGR GG+EF
Sbjct: 269 EAEESNTPLSLCVCDLDHFKEVNDTLGHQAGDNILTTFAEILRKNIRENDFVGRFGGDEF 328

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-IIYR 239
                 ++  +AA +   +R           +   + +T + GIAE  H       ++ +
Sbjct: 329 VICFPDATSDQAAEIVERIRTRFAEY-----NALKLSVTSTFGIAELSHAANTDDLLLEK 383

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD+ALY AK++GRN+V  
Sbjct: 384 ADKALYKAKENGRNQVHW 401


>gi|319649241|ref|ZP_08003400.1| hypothetical protein HMPREF1013_00004 [Bacillus sp. 2_A_57_CT2]
 gi|317399046|gb|EFV79725.1| hypothetical protein HMPREF1013_00004 [Bacillus sp. 2_A_57_CT2]
          Length = 294

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 93/202 (46%), Gaps = 17/202 (8%)

Query: 71  LVIISITISLL------LGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           +V + +++S++      L  IS    + +   S   + Q++  D L+ L N   F   L 
Sbjct: 91  IVWVLLSVSIVREGNKPLFLISQIQDITDRKNSERILKQMAHYDFLTQLPNRRLFEERLN 150

Query: 124 SYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
              E        +++++ D+D FKQIND FGH +GD ++  ++ +L    G    V RL 
Sbjct: 151 HAIESANFNKGLVAVLYLDLDGFKQINDTFGHDLGDLLLKEVARRLTGCIGNKDTVARLA 210

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPIST 235
           G+EF      ++   A  +A  +  I+ N          I IT S GIA        +  
Sbjct: 211 GDEFTILLPETTIDNAKHVAERIIDILSNK--VSVQNVVISITPSIGIAFCDDFNMDVRN 268

Query: 236 IIYRADQALYVAKKSGRNRVVC 257
           ++  AD+A+Y AK++G+N    
Sbjct: 269 LLKYADEAMYQAKQNGKNNYQV 290


>gi|301632470|ref|XP_002945308.1| PREDICTED: signaling protein ykoW-like [Xenopus (Silurana)
           tropicalis]
          Length = 834

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 12/192 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
              + E   +     +L+  D L+GL N       L           +  +++F D+D F
Sbjct: 395 ARDITERKRAEAETERLAFYDELTGLPNRRLLQDRLQQAMRLSVRDGKHCALLFLDLDNF 454

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS--EQEAAILAN 197
           K IND+ GH  GD ++     +L         V RLGG+EF     G     + A+ +A 
Sbjct: 455 KTINDSMGHDWGDHLLRQAGMRLSGCVRASDTVARLGGDEFVLVLQGLDSVSERASAMAE 514

Query: 198 DLRKII--ENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
            +   I     Q     G +++ T S GIA    ++  +S ++  AD A+Y AK  GRN 
Sbjct: 515 VIAHKISLALGQPYQLGGCTLYSTPSIGIALFQGQKTAVSELLQHADLAMYQAKSRGRNT 574

Query: 255 VVCFSDIENNTC 266
           +  F      T 
Sbjct: 575 LCFFDASMQATA 586


>gi|289626717|ref|ZP_06459671.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289648005|ref|ZP_06479348.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330867293|gb|EGH02002.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 763

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 69/271 (25%), Positives = 117/271 (43%), Gaps = 41/271 (15%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE-------------NLSLVIISI 76
           Y  +F  +F   V  +    L  + L     L  ++ E              L L I +I
Sbjct: 185 YNGMFHQMFRYGVSLLLGAGLLTMHLMGMRALRLVMPEGATLHIPGTENSQQLGLTIAAI 244

Query: 77  TISLLLGYISGS------------------ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           T+ ++ G IS +                  +L +L  +   + Q++  D L+ L+N   F
Sbjct: 245 TLLIIAGSISAAMADKKLQGKEHDLQRVNALLSQLDQARVSLQQVAHYDPLTNLINRRGF 304

Query: 119 I----SSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  L  +   N  L+++F DID+FK+IND+ GH  GD+++  +++++         
Sbjct: 305 NQIFAEKLQEHTYNNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDV 364

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           V R GG+EF         +EA  LA  + + ++ +     +G  + +T S GIA      
Sbjct: 365 VSRFGGDEFCILLSIPDYEEARHLAYRVMQKMKETI--ALAGRRMVMTTSIGIAVFPRDG 422

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                ++  AD ALY +K +GRNRV  FS  
Sbjct: 423 STCDELLKHADLALYQSKDNGRNRVNFFSPA 453


>gi|253995574|ref|YP_003047638.1| PAS/PAC sensor-containing diguanylate cyclase [Methylotenera
           mobilis JLW8]
 gi|253982253|gb|ACT47111.1| diguanylate cyclase with PAS/PAC sensor [Methylotenera mobilis
           JLW8]
          Length = 310

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 59/213 (27%), Positives = 103/213 (48%), Gaps = 18/213 (8%)

Query: 62  EYILVENLSLVIISI--TISLLLGYI-----SGSILKELFISYNRISQLSRIDCLSGLLN 114
           EY+ + ++  V+ +    +  L+G++       +  ++L +    + +LS  D L+G+ N
Sbjct: 98  EYVWIRDVVHVVRNAEGMVEALIGFMFDITERKNTEQKLIVLQKELEELSFKDALTGVYN 157

Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-F 166
              F S +          ++ LS++  DIDYFKQ ND++GH  GD+ +  ++  L  V  
Sbjct: 158 RRMFDSVMEVEWANAKRNHQPLSLLMLDIDYFKQYNDHYGHIHGDECLKLVAKALSNVGT 217

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIA 225
            +  F  R GGEEF      +    A ++A   R +I  +QI         I T+S G++
Sbjct: 218 RSRDFFARFGGEEFIVVLPETDAAAANMIAERCRSLIFKAQIPHEKSLVSQILTVSIGVS 277

Query: 226 E--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                H +    +I + D+ LY AK+ GRNR+ 
Sbjct: 278 TIIPAHSDQAIDLIAKVDRQLYQAKEKGRNRIA 310


>gi|218676052|ref|YP_002394871.1| GGDEF family protein [Vibrio splendidus LGP32]
 gi|218324320|emb|CAV25654.1| GGDEF family protein [Vibrio splendidus LGP32]
          Length = 405

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 117/247 (47%), Gaps = 19/247 (7%)

Query: 25  HTFMIYFSIF--FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL 82
              ++  S+F   SIF+   I+I    L    +  F  L+   +  L+ +I +I +S  +
Sbjct: 152 AALVLLMSVFSAHSIFMLVRIWIT---LKEPNIDDF--LQASSIHQLAFIITAILLST-I 205

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFD 135
           G+    +L    +    +   S  D L+ L N  A    L         +N  LS++  D
Sbjct: 206 GFTYNWLLNARLM--QSLYSSSMKDSLTQLYNRRAMNEMLRREWMRSVRHNHPLSVIILD 263

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FKQ+ND  GH  GD+V+  +   L           R GGEEF      +   EA  +
Sbjct: 264 IDHFKQVNDQHGHQTGDQVLKKIGIILQHNLRAADIPFRYGGEEFLIVLPDTRIGEACKV 323

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A  LR IIE ++       S ++T S G++E   ++ + ++I RAD+ALY AK++GRN V
Sbjct: 324 AEKLRIIIEETKFWRQ--QSANLTASFGLSELWAEDKVPSMIKRADEALYYAKENGRNTV 381

Query: 256 VCFSDIE 262
              +D +
Sbjct: 382 CALTDEQ 388


>gi|83645901|ref|YP_434336.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83633944|gb|ABC29911.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 555

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 87/177 (49%), Gaps = 9/177 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           KEL      + +++  D L+GL N   F + L         Y   L++V  DID+FK IN
Sbjct: 367 KELDKENLELREIAARDSLTGLYNRRFFQNRLNYEFNRAKRYGSGLTLVLLDIDHFKIIN 426

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GHP GD+V+  LS  L     +   + R+GGEEF        ++      + LR  I
Sbjct: 427 DTKGHPAGDEVLIRLSSFLSQSLRSSDLIARIGGEEFCIILPEHLDEGVKTFIDRLRIEI 486

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
                    G +  +T S G+AE  ++      I+ +AD+ALY AK++GRNR+V  S
Sbjct: 487 SLLDFQH-EGEAFQVTCSFGVAEYRNESSHPKDILKKADEALYQAKRTGRNRIVYES 542


>gi|256752477|ref|ZP_05493334.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256748612|gb|EEU61659.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 486

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 97/192 (50%), Gaps = 12/192 (6%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
            I +++   S +I+      Y  +++ S  D L+   N   F  +L          +E +
Sbjct: 297 IIEIIVDQASVAIIN--AKRYYEVTKKSITDPLTKTYNRRYFNDALMENIMRADETSEPV 354

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++ FD+D FK IND +GH VGD+V+  ++ ++     +   V R GGEEFA      + 
Sbjct: 355 SLIMFDLDNFKLINDTYGHLVGDEVLKEVAKRIKNNVRSDDIVARFGGEEFAVILPKLTA 414

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYV-A 247
           ++A ++A  +R  + +  I    G  I++TI+ G+A+   K +    +I  AD+ALY   
Sbjct: 415 EQAYMIAERIRNEVSSRPIRTDKG-DIYVTITGGVADYPEKADSAEKLISHADRALYAGG 473

Query: 248 KKSGRNRVVCFS 259
           K  GRN++  + 
Sbjct: 474 KSKGRNKIAIYE 485


>gi|255022007|ref|ZP_05294013.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidithiobacillus caldus ATCC 51756]
 gi|254968493|gb|EET26049.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidithiobacillus caldus ATCC 51756]
          Length = 709

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 83/190 (43%), Gaps = 10/190 (5%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +LL   +    + E       ++  +  D L+GL N + F+  L         +  +L++
Sbjct: 238 ALLGVVLVFHDVTEKRRLTAELAHQATHDALTGLPNRTLFLDRLAHDRAQATRHERQLAV 297

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-Q 190
              D+D FK +ND FGH  GD ++  ++ +L     +   + R+GG+EF       ++  
Sbjct: 298 GILDLDGFKLVNDRFGHAAGDALLQEMAQRLQTKMRSGDTLARMGGDEFGLLLTDITQID 357

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
           E       + + +  +  ++  G  + ++ S G+          + ++  AD ALY AK 
Sbjct: 358 EVEHACARMLEALR-TPFHLPGGEEVPLSASIGLTSYPLDDSSPADLLRHADLALYAAKA 416

Query: 250 SGRNRVVCFS 259
           +GR+    F 
Sbjct: 417 AGRDCFRWFD 426


>gi|67459442|ref|YP_247066.1| response regulator PleD [Rickettsia felis URRWXCal2]
 gi|67004975|gb|AAY61901.1| Regulatory components of sensory transduction system [Rickettsia
           felis URRWXCal2]
          Length = 450

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 89/191 (46%), Gaps = 13/191 (6%)

Query: 79  SLLLGYISGSILKELFISYNR--ISQ---LSRIDCLSGLLNHSAFISSLGSYNEK----- 128
           S LL  I   + ++ +    R  + Q   L+  D L+GL N   F   L    EK     
Sbjct: 258 SELLARIRTQLRRKQYQDNLRNDLEQSVNLAAKDGLTGLFNRRYFDIHLKQMIEKANKES 317

Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             L ++  DID FK +ND +GH  GDKV+  +S  L         + R GGEEF      
Sbjct: 318 IKLYLLMCDIDNFKHVNDTYGHQAGDKVLTIVSRILKNTLRVTDLIARFGGEEFTILLTD 377

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALY 245
               +A   A  +R  IE    +I      +  TIS G+ E   +E I + I RAD+A+Y
Sbjct: 378 IDISKAIETAERVRVKIEYMDFHIEDQIEPLKKTISIGVTEYKKEESIESFIERADKAMY 437

Query: 246 VAKKSGRNRVV 256
            AK +G+N+VV
Sbjct: 438 EAKTTGKNKVV 448


>gi|302336914|ref|YP_003802120.1| diguanylate cyclase with PAS/PAC sensor [Spirochaeta smaragdinae
           DSM 11293]
 gi|301634099|gb|ADK79526.1| diguanylate cyclase with PAS/PAC sensor [Spirochaeta smaragdinae
           DSM 11293]
          Length = 522

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 57/194 (29%), Positives = 94/194 (48%), Gaps = 9/194 (4%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIV 132
           +L   I    +        ++  L+  D L+G+ N     S           Y   L+++
Sbjct: 329 VLGSLILLDDITNRVRLLEKMETLASKDPLTGISNRRHLSSFGEKEVMRAFHYGTNLALI 388

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            FD+D FK++ND +GH VGD+++  + +    +      +GR GGEEF      +S  +A
Sbjct: 389 MFDLDLFKKVNDTYGHDVGDQLLIHIVEIARGLVREADLLGRYGGEEFVILLPQTSLSDA 448

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKS 250
            ++A  +R  IE S + + SG SI +T S G+            ++  +AD+ALY AK  
Sbjct: 449 QLIAERIRSSIEISPLALESGTSIPMTASFGVTSSLGSSDFSFESLCKKADEALYRAKAE 508

Query: 251 GRNRVVCFSDIENN 264
           GRN+VV F + +N 
Sbjct: 509 GRNQVVTFLETDNE 522


>gi|78486192|ref|YP_392117.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78364478|gb|ABB42443.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2]
          Length = 620

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 58/188 (30%), Positives = 93/188 (49%), Gaps = 12/188 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           +  + + E     +++  L   D L+G+ N   F  +L         Y    S+ F DID
Sbjct: 438 VLMTDITEEEHYKSQLEHLIIHDELTGVYNRHYFNRTLEQEIKRHQRYQSPFSMAFMDID 497

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK IND +GH VGD V+  L+  +  +  +     R+GGEEF      +S + A I++ 
Sbjct: 498 HFKMINDTYGHDVGDAVLVSLAKNISSLLRSTDVFCRVGGEEFVIMMPETSLENALIISE 557

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +R  +E      S      ITIS G+ E    + + +   RAD+ALY AK++GRNR+  
Sbjct: 558 RIRSTVEGIS---SKDVPEKITISMGLVELNSWDNVQSFYKRADEALYKAKENGRNRIE- 613

Query: 258 FSDIENNT 265
            + +E+ T
Sbjct: 614 -TQVEDRT 620


>gi|330503452|ref|YP_004380321.1| GGDEF [Pseudomonas mendocina NK-01]
 gi|328917738|gb|AEB58569.1| GGDEF precursor [Pseudomonas mendocina NK-01]
          Length = 618

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 10/177 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           +EL +  +R+  LS  D L+G+ N   F   L           E L++   D+D+FK  N
Sbjct: 438 EELQVLNSRLEMLSLTDALTGIANRRHFDEVLAKECKRALRVGEPLALAVLDVDWFKTYN 497

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D++GHP GD  +  ++  L   +  +   V R GGEEF   A  +    A  +A  L + 
Sbjct: 498 DHYGHPAGDSCLQQIAHTLAATISRSTDLVARYGGEEFVFLAPSTGLAGAQSMAEKLVRA 557

Query: 203 IENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +E   +     P  ++TIS GIA   R    P   ++ RAD ALY AK  GRNR+ C
Sbjct: 558 VEALALPHERSPLGYVTISVGIALMPRDADSPAQALLQRADAALYRAKSQGRNRLAC 614


>gi|116252452|ref|YP_768290.1| GGDEF sensory box protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257100|emb|CAK08194.1| putative GGDEF sensory box protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 355

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 8/183 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKL-SIVFFDIDYFKQIN 143
           + ++    +   +++  D L+ L N  AF   L      S    + +++  DID FK+IN
Sbjct: 162 MDQVRKELDEYKRIANTDSLTRLSNRRAFDDRLAAIFDNSSMRPVTALLLCDIDNFKKIN 221

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHPVGDKV+A ++  +       +FV R GGEEFA    G++ +E   +A  +R+ +
Sbjct: 222 DTYGHPVGDKVLATVASVIRSNVRRDIFVARTGGEEFALIIDGNTPEEVTGIAERIRRTL 281

Query: 204 ENSQINISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E +    S     +  +T+S GI    + E    +  + D ALY AK +GRN  + + D 
Sbjct: 282 ETTPFKNSRTRVNYGPVTVSIGICMASNAEDAGELYSKTDIALYGAKNAGRNCTILYQDG 341

Query: 262 ENN 264
              
Sbjct: 342 MQK 344


>gi|114706503|ref|ZP_01439404.1| periplasmic sensor diguanylate cyclase (GGDEF) [Fulvimarina pelagi
           HTCC2506]
 gi|114537895|gb|EAU41018.1| periplasmic sensor diguanylate cyclase (GGDEF) [Fulvimarina pelagi
           HTCC2506]
          Length = 442

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 62/232 (26%), Positives = 103/232 (44%), Gaps = 23/232 (9%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE 92
           +  ++  A    +  I  F  G+ P   L   +  N   +       LLLG+    + + 
Sbjct: 148 VLATLGCAQSFLLLLIPFFAPGVDPMRTLVPHVAANWFGI-------LLLGHFLTGVGRR 200

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---------KLSIVFFDIDYFKQIN 143
              +   + + +  D L+GL N  AF  S+   ++          ++++  DID+FKQ+N
Sbjct: 201 RHAT-RILQREAFTDSLTGLPNRRAFDQSVERLSDLRERGEVPGPVALLLIDIDHFKQVN 259

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GDKV+  +S  +         + R GGEE A     +   +A  +A  +R  +
Sbjct: 260 DQWGHFFGDKVLRSVSTTIRRQVRRGDILARYGGEEIAVILPSTQHSDACSVAERIRMAV 319

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           EN +        + IT S G+A          +   AD+ALY AKK+GRNR+
Sbjct: 320 ENGEF------RVKITASVGVAIDEDINAFCDLFQAADRALYRAKKNGRNRI 365


>gi|330951409|gb|EGH51669.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 712

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 95/197 (48%), Gaps = 14/197 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++          ++ L +
Sbjct: 254 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 310

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQ 190
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF     G    +
Sbjct: 311 LFMDLDGFKQINDALGHEAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           +AA +A  L + +   +     G  I +  S GIA        +  ++  AD A+Y AK+
Sbjct: 371 QAAKIAEKLIERVSGRRQ--VDGVEITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKR 428

Query: 250 SGRNRVVCFSDIENNTC 266
           +GR +   +    N   
Sbjct: 429 AGRQQYRFYDQNMNGRA 445


>gi|291286731|ref|YP_003503547.1| diguanylate cyclase with PAS/PAC sensor [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290883891|gb|ADD67591.1| diguanylate cyclase with PAS/PAC sensor [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 303

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 7/184 (3%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA----FISSLGSYNE---KLSIVF 133
           +   +S +   EL     ++ +    D L+ + N           +  + +     S+ F
Sbjct: 119 MFSDLSKNTHGELICELEKLKEEVYTDTLTSIGNRKYAEITLTRRINEWLDVGIPFSVFF 178

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID FK +ND +GH  GDKV+  +   L     +     R GGEEF   A   +     
Sbjct: 179 LDIDDFKTVNDTYGHDTGDKVLKMVGKSLTGTLRSMDVACRWGGEEFVIIAPNLTPASTR 238

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +A  LR  IE S I+      I IT+S G       +   ++I RAD A+Y +K+SG+N
Sbjct: 239 AVAERLRIFIEKSWIHAGDNKEISITVSVGCTVCKGNDTPESVIKRADSAMYKSKQSGKN 298

Query: 254 RVVC 257
           RV  
Sbjct: 299 RVSF 302


>gi|52841587|ref|YP_095386.1| inner membrane protein PLUS sensory box protein LssE [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52628698|gb|AAU27439.1| inner membrane protein PLUS sensory box protein LssE [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 792

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 10/174 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R++  +  D L+GL N +A    L          N  LS++F DID FK IND+ GH  G
Sbjct: 352 RLAYQANHDSLTGLPNRTALYDRLDHAINYCKRLNTSLSVLFLDIDNFKLINDSLGHDAG 411

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++   S +L         V R GG+EF    + +  ++  ++A ++ K +    I + 
Sbjct: 412 DILLYEFSRRLKGCIRHSDTVARFGGDEFVLLLMTTEPKDVILIAQNILKAVAQ-PIKLP 470

Query: 212 SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +   + +T S GI+         ST++  +D A+Y+AKK GRN    +++  N 
Sbjct: 471 T-QEVIVTTSIGISLFPKDGIDASTLLKNSDTAMYLAKKEGRNNFQFYNNSINQ 523


>gi|320085625|emb|CBY95403.1| Cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 353

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 127/266 (47%), Gaps = 28/266 (10%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY------GLEYILVE----- 67
           + S+  + F++++ + F+  ++ ++ +  +   Y  L           L  +L       
Sbjct: 87  MWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLWLTALLASVQLNQ 146

Query: 68  --NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDCLSGLLNH 115
             N+  +++ +T++ +L Y   I      E ++ Y        R+  ++  D L+G  N 
Sbjct: 147 YMNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANR 206

Query: 116 SAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MF 171
            +  S LG      E  +++  D+DYFK  ND++GH  GD  +A ++  +     TP   
Sbjct: 207 RSMESFLGDALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVACVVKRSIRTPADL 266

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHK 230
           V R GGEEF      SS  EAA++A  ++  +  + +  ++   S  +T+S GI      
Sbjct: 267 VARYGGEEFVVVLPSSSLNEAALVAQRIQTNLRETALPHAASAVSETVTVSMGITLSTAG 326

Query: 231 EPISTIIYRADQALYVAKKSGRNRVV 256
           + ++ II RAD+ALY AK+ GRNR V
Sbjct: 327 DTVTGIIARADEALYRAKQQGRNRWV 352


>gi|161519719|ref|YP_001583146.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia multivorans
           ATCC 17616]
 gi|189354100|ref|YP_001949727.1| putative diguanylate cyclase protein [Burkholderia multivorans ATCC
           17616]
 gi|160343769|gb|ABX16854.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia multivorans
           ATCC 17616]
 gi|189338122|dbj|BAG47191.1| putative diguanylate cyclase protein [Burkholderia multivorans ATCC
           17616]
          Length = 312

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 11/203 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           L     +  + +TIS +       + +E   +  ++ + +  D L+G+ N   F + L  
Sbjct: 113 LTRGRDVEAVCVTISDVTH--VSVMQREREEAVAKLREHANRDGLTGIANRRYFETRLGE 170

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   LS++ FD+D+FK IND FGH VGD V+   + ++  +       GR GG
Sbjct: 171 EFARWQRYGGDLSMLLFDLDHFKAINDRFGHAVGDAVLRETARRVAAIVRAQDTFGRFGG 230

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STI 236
           EEFA     ++ +EA  +A+ +R  I  + ++ + G S+ +T S G A     +P    +
Sbjct: 231 EEFALLLPCTNLEEALQVADKVRDAIGRTPVD-AEGVSVAVTASVGAACAKLGQPACDAL 289

Query: 237 IYRADQALYVAKKSGRNRVVCFS 259
           +  AD ALY AK+ GR+R V ++
Sbjct: 290 VNDADAALYRAKRLGRDRSVGYA 312


>gi|146313336|ref|YP_001178410.1| diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638]
 gi|145320212|gb|ABP62359.1| diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638]
          Length = 692

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 63/278 (22%), Positives = 117/278 (42%), Gaps = 21/278 (7%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIA--------NIFLFYIGLT 56
               +++WL      E+       +  ++   I IA + +             + + G+ 
Sbjct: 151 AASLVALWLTFRLRYEAAQVALMRLGAALTMGIAIAGMHYAGMKAAQFPVTTHMHHHGIN 210

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLL 113
             +    + V  LS++ I++ +S+L   +      +   L  +   ++QL+  D L+ L 
Sbjct: 211 GSWLAVLVSVVALSILAITLLVSMLDARLQARTTLLASSLAEANRELAQLALHDTLTRLP 270

Query: 114 NHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N       L              +++F D+D FK +ND +GH  GDK++  ++ +L++  
Sbjct: 271 NRILLEDRLSQAINKADREGTHFALMFMDLDGFKAVNDAYGHVTGDKLLVAVTKRLLLPL 330

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                + R+GG+EF      S   +AA LAN L + I++          + +T+S GIA 
Sbjct: 331 KGQYTLARIGGDEFVLLVEVSGPDDAASLANALVRAIDS--PFSVDPYELVVTVSIGIAL 388

Query: 227 RCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             H       +++ AD A+Y  K  GRN    F    N
Sbjct: 389 YPHDGKTDREMMFNADAAMYHTKHVGRNGYHFFQPSMN 426


>gi|332993458|gb|AEF03513.1| GGDEF domain-containing protein [Alteromonas sp. SN2]
          Length = 987

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 91/185 (49%), Gaps = 8/185 (4%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSI 131
           S+ L  +     K+L     +++ +S  D L+GL N   F S           Y +  S+
Sbjct: 803 SVALAKMVEEKTKDLEDVVEKLTLISSQDPLTGLKNRRYFTSRAHEAWDSYERYAQAFSL 862

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FKQIND +GH VGD V+  +++ L         + R GGEEF       +  E
Sbjct: 863 LIVDIDWFKQINDTYGHHVGDLVLVKVAELLRTNLRNSDVICRWGGEEFLILLPQLNVHE 922

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              +   LRK +E +  +   G  +++TI+AGIA+    + +   I+ AD+ LY  K  G
Sbjct: 923 CYWVGEKLRKSVEKASFHC-EGYDVNVTITAGIADIRESDSVEQCIHAADKKLYKGKADG 981

Query: 252 RNRVV 256
           RN VV
Sbjct: 982 RNAVV 986


>gi|294139366|ref|YP_003555344.1| GGDEF domain-containing protein [Shewanella violacea DSS12]
 gi|293325835|dbj|BAJ00566.1| GGDEF domain protein [Shewanella violacea DSS12]
          Length = 566

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 14/214 (6%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
            +G  ++L+  L +  I     L+   +      +L  +  ++ ++S+ D L+ + N   
Sbjct: 335 VFGGLFVLLSALYVYAILRRAELIEKEVKQRT-ADLNEAKRQLEEISQTDSLTKIPNRRC 393

Query: 118 FISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTP 169
           F  SL    +       +L ++  DID+FK  ND +GHP GD+ I  ++  L   +    
Sbjct: 394 FDESLQEEWQKAIRNKSRLGLIMIDIDHFKLYNDTYGHPAGDQCIKDVAQTLNQTLNRGK 453

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAERC 228
             V R GGEEF      +  ++    A   +  IE  ++   +   S  +T+S G+    
Sbjct: 454 DLVARYGGEEFVVILPHT--RDCVSPAKRCQYNIERLELPHETSMTSSFVTVSVGVYSIF 511

Query: 229 HKEPISTI--IYRADQALYVAKKSGRNRVVCFSD 260
             +    +  I RAD ALY AK  GRNRV  + +
Sbjct: 512 PDKDSDLLEFIARADTALYQAKNEGRNRVCVYEE 545


>gi|125973797|ref|YP_001037707.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum ATCC
           27405]
 gi|125714022|gb|ABN52514.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum ATCC
           27405]
          Length = 550

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 9/177 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           I  E    Y R+ +++ ID L+G+ N   F   L          N  LS+   DID+FK+
Sbjct: 373 IAMENVELYQRMHEMATIDSLTGIYNRLYFQERLREEFANAKKENYDLSLAIMDIDHFKR 432

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            ND FGH  GDKV+  ++  +     +   + R GGEEF      +S +EA      LR 
Sbjct: 433 FNDTFGHLFGDKVLKHIAHLMKKSLRSGDIIARYGGEEFVILLPRTSVKEAYDKVERLRN 492

Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
           I+  + I         +T+S G++         S ++  AD ALY AK+SGRN V  
Sbjct: 493 IVAKTTIK-DELVEASVTVSFGVSSYPEFANTESELLKTADNALYDAKESGRNCVRI 548


>gi|186472442|ref|YP_001859784.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           phymatum STM815]
 gi|184194774|gb|ACC72738.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           phymatum STM815]
          Length = 944

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 11/183 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           +EL  +  R+   +  D L+GL N S     L        S  E LS++F D+D FK +N
Sbjct: 500 QELDAANARLLHENYHDALTGLPNRSHLYERLAAAWLGYSSRGEPLSVLFIDLDRFKVVN 559

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GD ++  ++ +L         + RLGG+EFA    G+S Q    LA  +    
Sbjct: 560 DSLGHLFGDALLVEVAGRLRDCLRRDDLLARLGGDEFAVVVPGASLQTVLTLAERILAAF 619

Query: 204 ENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            ++  NI    ++  + S G+  A+  H    + ++  AD A+Y  K  GR+    F+  
Sbjct: 620 -DTPFNIGE-QTVFTSCSVGVVSADSAHHREPADLLRDADAAMYRVKNRGRDSFAVFNQQ 677

Query: 262 ENN 264
              
Sbjct: 678 MRR 680


>gi|90407481|ref|ZP_01215664.1| GGDEF domain protein [Psychromonas sp. CNPT3]
 gi|90311402|gb|EAS39504.1| GGDEF domain protein [Psychromonas sp. CNPT3]
          Length = 493

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 62/186 (33%), Positives = 86/186 (46%), Gaps = 15/186 (8%)

Query: 88  SILKELFISYN-------RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVF 133
             +KEL            + S+L+ +D L+ + N  A+   L         Y   L I  
Sbjct: 299 RQIKELKSETQNYQKTLKQQSELAHLDFLTKIPNREAWSERLTFEFSRYQRYQNPLKIAI 358

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D+FK+IND FGH  GDKVI  ++  L        F+ R GGEEFA      + ++A 
Sbjct: 359 IDMDHFKRINDQFGHLAGDKVINVVAQTLKKSLRNTDFIARYGGEEFAILLPEITNEQAV 418

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +   L   I +         +I ITIS G A     + I +   RAD ALY AK  GRN
Sbjct: 419 DVLQKLCAKIASIPFKFKKD-NISITISIGCASFDKGDNIDSAFERADNALYKAKNGGRN 477

Query: 254 RVVCFS 259
           +VV F+
Sbjct: 478 QVVFFA 483


>gi|326319510|ref|YP_004237182.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323376346|gb|ADX48615.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 357

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 9/175 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           +E+    +++ + +  D L+GL N     ++L +           LS++  DID+FK++N
Sbjct: 173 EEIRALQDQLQEQAMRDPLTGLYNRRHLDATLAARIAQCGARGLPLSLLMIDIDHFKRVN 232

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD ++  L+  L           R GGEEF      +    A   A  LR+  
Sbjct: 233 DTHGHAAGDAMLQALAQLLQRHVRVQDLACRHGGEEFVLLLPETPLTIARERAEALRQAF 292

Query: 204 ENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           E  Q+       +  T+S G+ A   H +    ++ RAD+ALY AK  GRNRV  
Sbjct: 293 EALQVRHGPDA-LSTTLSCGVSAFPQHADEPHALLARADEALYSAKVQGRNRVAV 346


>gi|239937647|gb|ACS35620.1| putative GGDEF domain protein [Aeromonas sp. YS3]
          Length = 232

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 62/171 (36%), Positives = 86/171 (50%), Gaps = 12/171 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFG 147
           + L  S   + +L+  D L+GL N  A +  LG    +   L+++  DID+FKQIND  G
Sbjct: 55  RRLHRSSRHLYKLATFDQLTGLPNRRALLERLGQQWLHETPLTLLIIDIDHFKQINDKHG 114

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+ I  L+ +L         +GR GGEEF  A           LA  LR  I    
Sbjct: 115 HQAGDQAIRQLARELKSWAPDQQLIGRWGGEEFLVAMTQ-DGATCWRLAEQLRSRIAYLA 173

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
                    H+TIS G+AER    + +S +I+RAD A+Y AK+ GRN+ V 
Sbjct: 174 AP-------HMTISIGVAERSTQDDSLSQLIHRADMAMYQAKRQGRNQTVL 217


>gi|156933425|ref|YP_001437341.1| hypothetical protein ESA_01243 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531679|gb|ABU76505.1| hypothetical protein ESA_01243 [Cronobacter sakazakii ATCC BAA-894]
          Length = 556

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 56/198 (28%), Positives = 94/198 (47%), Gaps = 10/198 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---- 123
           L L+ +  T  L L + +   +++ +      +   +  D L+ L N  AF         
Sbjct: 356 LGLLWLLFTAMLFLSWRVIVGMVRNMLTMQRSLKWRAWYDTLTRLYNRGAFFERARMAAK 415

Query: 124 ---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              + +E  S++  D+D+FK IND +GH  GDKV+ + +  L          GR+GGEEF
Sbjct: 416 TCFAQSEPFSVIQLDLDHFKSINDRYGHQAGDKVLTWAAGMLSRSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G++   A  +A  +R+ I + +I +    +I I++S G+  A R        +  
Sbjct: 476 CVILPGTTADGARQVAERIRQRINSQEILVRPDTTIRISVSVGVSEARRDGDYDFEHLQS 535

Query: 239 RADQALYVAKKSGRNRVV 256
            AD  LY+AK+ GRN+V 
Sbjct: 536 IADHRLYLAKQRGRNQVC 553


>gi|153833810|ref|ZP_01986477.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Vibrio
           harveyi HY01]
 gi|148869868|gb|EDL68836.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Vibrio
           harveyi HY01]
          Length = 815

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 90/189 (47%), Gaps = 11/189 (5%)

Query: 81  LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           L+ YI     +        ++ +++  D L+ L N +  IS L  +           + +
Sbjct: 370 LINYICVFEDISVRKAHEEKLQRMAFYDPLTNLPNRTHLISLLEQHIENGQKHQHAFATL 429

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQE 191
           F DID+FK IND+ GH  GD+++  L+++L  V      V R+GG+EF        S+ +
Sbjct: 430 FLDIDHFKHINDSMGHFCGDQLLTKLAERLQDVLHLRAHVARIGGDEFVIILPNIESDSQ 489

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
                 D+  +  N    +S   S+ I+ S G+A      +   T++  AD A+Y+AKK+
Sbjct: 490 LIDTIEDILCLF-NRPFEVSKNESLRISTSVGVARYPQDGQDSETLLKNADTAMYLAKKN 548

Query: 251 GRNRVVCFS 259
           GRN    +S
Sbjct: 549 GRNGYAFYS 557


>gi|259156610|gb|ACV96553.1| pas/pac/ggdef-domain containing protein [Vibrio fluvialis Ind1]
          Length = 423

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 12/198 (6%)

Query: 70  SLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG----- 123
           S+  I      +  Y+S G  + E       + + + +D L+GL N +   + L      
Sbjct: 223 SISAIKDLAGNITNYVSVGKDVTERLREEQALRESATVDQLTGLFNRNHGKALLREAYSF 282

Query: 124 --SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             S  E +S++  DID+FKQIND+FGHPVGD+++A +S  L         V R GGEEF 
Sbjct: 283 TLSREEPMSLILCDIDHFKQINDSFGHPVGDQILAQVSGLLRKSVRGNDRVIRWGGEEFL 342

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                 ++  AA LA  LR  I + Q          +T+S G+A    KE +  +I R D
Sbjct: 343 ILLENCTDMVAAELAERLRLRIASEQFQSVG----KVTVSLGVASLFQKESLEQLISRCD 398

Query: 242 QALYVAKKSGRNRVVCFS 259
           +ALY +K++GRN++   +
Sbjct: 399 EALYKSKRNGRNQLTLAT 416


>gi|163782883|ref|ZP_02177879.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882004|gb|EDP75512.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 711

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 53/180 (29%), Positives = 78/180 (43%), Gaps = 8/180 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           K L      I   +  D L+GL N   F       I          +++  D+D FK IN
Sbjct: 285 KALEEYARNIEYYATRDPLTGLYNQRVFWELLEYEIERAQRRGYSFAVLMIDLDNFKVIN 344

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GDK +   +  +   F     V R GG+EF      +SE+EA   A    + +
Sbjct: 345 DTYGHDFGDKFLREFAKLMRKTFRREDIVARYGGDEFVVILPYASEEEALRSARRFIEEL 404

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +N  +    G  I  T+S GIA    H E    +   AD  +Y AK  G++RV+  +D +
Sbjct: 405 DNFYVEAPDGKPIKATVSIGIALYPQHGESTQELFLTADNIMYRAKAEGKSRVMLPTDTD 464


>gi|148358887|ref|YP_001250094.1| inner membrane protein/sensory box protein LssE [Legionella
           pneumophila str. Corby]
 gi|296106935|ref|YP_003618635.1| inner membrane protein PLUS sensory box protein LssE [Legionella
           pneumophila 2300/99 Alcoy]
 gi|148280660|gb|ABQ54748.1| inner membrane protein PLUS sensory box protein LssE [Legionella
           pneumophila str. Corby]
 gi|295648836|gb|ADG24683.1| inner membrane protein PLUS sensory box protein LssE [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 526

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 10/174 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R++  +  D L+GL N +A    L          N  LS+ F DID FK IND+ GH  G
Sbjct: 86  RLAYQANHDSLTGLPNRTALYDRLEHAINYCKRLNTSLSVFFLDIDNFKLINDSLGHDAG 145

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++   S +L         V R GG+EF    + +  ++  ++A ++ K +    I + 
Sbjct: 146 DILLYEFSRRLKGCIRHSDTVARFGGDEFVLLLITTEPKDVILVAQNILKAVAQ-PIKLP 204

Query: 212 SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +   + +T S GI+         +T++  +D A+Y+AKK GRN    +++  N 
Sbjct: 205 T-QEVIVTTSIGISLFPKDGIDANTLLKNSDTAMYLAKKEGRNNFQFYNNSINQ 257


>gi|54297266|ref|YP_123635.1| hypothetical protein lpp1311 [Legionella pneumophila str. Paris]
 gi|53751051|emb|CAH12462.1| hypothetical protein lpp1311 [Legionella pneumophila str. Paris]
          Length = 792

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 10/174 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R++  +  D L+GL N +A    L          N  LS++F DID FK IND+ GH  G
Sbjct: 352 RLAYQANHDSLTGLPNRTALYDRLDHAINYCKRLNTSLSVLFLDIDNFKLINDSLGHDAG 411

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++   S +L         V R GG+EF    + +  ++  ++A ++ K +    I + 
Sbjct: 412 DILLYEFSRRLKGCIRHSDTVARFGGDEFVLLLMTTEPKDVILVAQNILKAVAQ-PIKLP 470

Query: 212 SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +   + +T S GI+         ST++  +D A+Y+AKK GRN    +++  N 
Sbjct: 471 T-QEVIVTTSIGISLFPKDGIDASTLLKNSDTAMYLAKKEGRNNFQFYNNSINQ 523


>gi|296392352|ref|ZP_06881827.1| GGDEF domain-containing protein [Pseudomonas aeruginosa PAb1]
          Length = 671

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 78/164 (47%), Gaps = 8/164 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            Q +  D L+GL N +A    L             L +   DID+FK+IND+FGH  GDK
Sbjct: 508 RQKALTDPLTGLPNRAALSERLEQEVARRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDK 567

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  ++ +L        F+ R GGEEF      +S +    L   LR  I     +   G
Sbjct: 568 VLKIIAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHFK-G 626

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             + IT SAGI      E    +  RADQALY AK++GR+R+  
Sbjct: 627 EPLSITCSAGITAFEGNEAGEVVFERADQALYRAKRAGRDRLEV 670


>gi|260223173|emb|CBA33470.1| hypothetical protein Csp_B19220 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 842

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 12/190 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
           G  + E   +  +I +L+  D L+ L N    +  L              +++F D+D F
Sbjct: 399 GRNITERKEAEEKIERLAFYDVLTDLPNRRLLMDHLQYAVASCARGRLHGALLFIDLDNF 458

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILAN 197
           K +ND  GH VGD ++  ++ +L         V R GG+EF      L  +  +A + A 
Sbjct: 459 KDLNDTRGHDVGDGLLRVVAQRLKACVRESDTVARFGGDEFVVLLQDLDGTLADAGVQAE 518

Query: 198 DL-RKIIENSQINISS-GPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
            + RKI++   I     G S H T S G+      ++ +  ++ +AD A+Y AK +GRN 
Sbjct: 519 LVARKILQQLNIPYELPGGSHHSTPSIGVVLIHGLRQSVDELLKQADLAMYEAKSAGRNT 578

Query: 255 VVCFSDIENN 264
           +  F     +
Sbjct: 579 LRFFDPAMQS 588


>gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille]
 gi|151280917|gb|ABR89327.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille]
          Length = 699

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 11/196 (5%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSI 131
           +LL    +   + E  +    I   +  D L+GL N +     +         Y +  +I
Sbjct: 250 TLLFFEGTVEAITERKLHEAEIQFQATHDALTGLPNRTLLYDRMQQAVLHSERYGKLTAI 309

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
            F D+D FK IND+ GH VGD+++   + +L         V R GG+EF         +E
Sbjct: 310 AFLDLDQFKFINDSLGHQVGDELLKITAQRLTSCLRESDTVARQGGDEFVLLLTDQPNEE 369

Query: 192 AAILANDLRKII-ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKK 249
           A  + + +++++ E SQ   ++     IT S G+           T++  AD A+Y AK+
Sbjct: 370 A--ITHTMQRVLHEVSQPWKANDLEFQITCSIGLTLCPDDGRDAETLLKNADSAMYKAKE 427

Query: 250 SGRNRVVCFSDIENNT 265
            GRN    FS   N++
Sbjct: 428 LGRNNFQYFSAEMNSS 443


>gi|134093880|ref|YP_001098955.1| putative signal peptide [Herminiimonas arsenicoxydans]
 gi|133737783|emb|CAL60828.1| conserved hypothetical protein; putative exported protein
           [Herminiimonas arsenicoxydans]
          Length = 944

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 11/191 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           +    +       + +   +  D L+GL N S     LG        Y   + I+F D+D
Sbjct: 490 VVQYDITATKRYESELEFQTNRDALTGLANRSLMRDRLGQAVSYAHRYGHPIWILFVDLD 549

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LA 196
            FK +ND  GH  GD ++  +S +L         V R+GG+EF       ++   +  + 
Sbjct: 550 RFKFVNDTLGHQAGDILLKAVSARLQAAVRDTDTVARMGGDEFVLILPERTDAGLSTGIM 609

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             + + I   Q     G    I+ S G+A      E    +I  AD A+Y AK++GRN  
Sbjct: 610 QRIMESIA--QPLTIEGHEFFISGSIGVAVYPADGETPEELIKHADIAMYRAKETGRNNF 667

Query: 256 VCFSDIENNTC 266
             ++   N   
Sbjct: 668 QFYTPAMNERA 678


>gi|187926396|ref|YP_001892741.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Ralstonia pickettii 12J]
 gi|241665883|ref|YP_002984242.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Ralstonia pickettii 12D]
 gi|187728150|gb|ACD29314.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Ralstonia pickettii 12J]
 gi|240867910|gb|ACS65570.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Ralstonia pickettii 12D]
          Length = 916

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDI 136
            +S + + ++  +  R+  L+  D L+GL N S FI+ L S        + +L++ F D+
Sbjct: 458 MLSFADITDIKRAEQRLRHLAAHDALTGLTNRSFFIAHLESAIESARDESRELALFFLDL 517

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAIL 195
           D FK +ND  GH  GD ++   + +L    G    + RLGG+EF        E +  A+L
Sbjct: 518 DRFKSVNDTAGHACGDTLLQSAAARLTDCIGPGDVIARLGGDEFVILIDQRVEGKRIALL 577

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           A  L + +     +  +G   ++ +S G+A   H     S ++  AD A+Y AK++GRNR
Sbjct: 578 AERLLQAMRE-PFDTVNG-RYYLGVSIGVALYPHDGISGSDLLRSADAAMYRAKQNGRNR 635

Query: 255 VVCFS 259
              ++
Sbjct: 636 AQFYT 640


>gi|20808701|ref|NP_623872.1| diguanylate cyclase/phosphodiesterase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517340|gb|AAM25476.1| Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF)
           [Thermoanaerobacter tengcongensis MB4]
          Length = 553

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 60/216 (27%), Positives = 105/216 (48%), Gaps = 16/216 (7%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112
           IG      +E    ++ S+ II I +      I+ +        Y  +++ S  D L+  
Sbjct: 344 IGCLLILHVETNAFDDDSVRIIEIIVDQASVAITNA------KKYYEVTRKSITDPLTKT 397

Query: 113 LNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N   F  +L          NE +S++ FD+D FKQIND +GH +GD+V+  ++ ++   
Sbjct: 398 YNRRYFNDALMENIMRADENNEPVSLIMFDLDNFKQINDTYGHLIGDEVLKEVARRIKNN 457

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
             +   V R GGEEFA      + ++A ++A  +R  + +  I    G  I++TI+ G+A
Sbjct: 458 VRSNDIVARFGGEEFAVILPKLTAEQAYMIAERIRTEVSSKPIKTEKG-DIYVTITGGVA 516

Query: 226 ERCHK-EPISTIIYRADQALYV-AKKSGRNRVVCFS 259
           +   K +    ++  AD+ALY   K  GRN++  + 
Sbjct: 517 DYPSKADSAEKLVSHADRALYAGGKSKGRNKIAIYE 552


>gi|94264857|ref|ZP_01288632.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|93454678|gb|EAT04943.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
          Length = 833

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 90/185 (48%), Gaps = 12/185 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + EL     R+ +++  D L+GL N       L            +L++ + D+D FK
Sbjct: 385 SDISELKEQQQRLERIAHYDTLTGLPNRDLLADRLNHAMIQTIRRQTRLAVAYLDLDGFK 444

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH VGD ++  L+ ++         +GRLGG+EF A      + E  +    L+
Sbjct: 445 AINDTHGHDVGDFLLRTLAGRMQQTLRESDTLGRLGGDEFVAIFQDLPDNETCLPL--LQ 502

Query: 201 KIIENSQINISSGPSI-HITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
           +++  + + +S   +I  ++ S G+      E      ++ +ADQA+Y AK++G+NR   
Sbjct: 503 RLLNAAAMPVSYQETILQVSASLGVTFFPQSEKIDADQLLRQADQAMYQAKQTGKNRYHL 562

Query: 258 FSDIE 262
           F  ++
Sbjct: 563 FDAVQ 567


>gi|320354615|ref|YP_004195954.1| PAS/PAC sensor-containing diguanylate cyclase and hemerythrin-like
           metal-binding domain-containing protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320123117|gb|ADW18663.1| diguanylate cyclase with PAS/PAC sensor and hemerythrin-like
           metal-binding domain protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 773

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 10/186 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
           Y +   + +       + Q++  D L+GL N +     L             ++I+F D+
Sbjct: 437 YAAAQDVTQRQELERTLEQMAYHDRLTGLANRALLFDRLSQALFNARRKQTMVAILFIDL 496

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAIL 195
           D FK +ND +GH  GD V+  ++++ +        V R GG+EF       +   EA ++
Sbjct: 497 DGFKGVNDQYGHDAGDLVLKTIAERFLARVRATDTVARTGGDEFVIVLNELNRADEAGLV 556

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           A +L + +    I ++SG +  +  S GI+   H    + T++  AD A+Y AKK+G+N+
Sbjct: 557 AQNLLEAVA-PDIALASGTTCRVGASIGISLFPHDGIDMDTLLMAADAAMYQAKKAGKNQ 615

Query: 255 VVCFSD 260
            V   D
Sbjct: 616 TVFADD 621


>gi|292489731|ref|YP_003532621.1| heme-regulated cyclic AMP phosphodiesterase [Erwinia amylovora
           CFBP1430]
 gi|292898061|ref|YP_003537430.1| signal transduction protein [Erwinia amylovora ATCC 49946]
 gi|291197909|emb|CBJ45010.1| putative signal transduction protein [Erwinia amylovora ATCC 49946]
 gi|291555168|emb|CBA23365.1| Heme-regulated cyclic AMP phosphodiesterase [Erwinia amylovora
           CFBP1430]
          Length = 818

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 58/211 (27%), Positives = 95/211 (45%), Gaps = 19/211 (9%)

Query: 73  IISITISLLLG--------YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           IIS + S++ G         +    + +   +  RI  ++  D L+ L N   F   L  
Sbjct: 361 IISASASMVRGKDARHSYVLLIADDVTDQRAADARIHHMAHHDNLTSLPNRVLFNQHLTT 420

Query: 123 ----GSYNEKL-SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                   ++L +++  D+D FK +ND  GH VGD ++  ++ +L  V      + R GG
Sbjct: 421 ALREDRDAQRLTAVLGLDLDNFKNVNDALGHQVGDALLCSVAVRLRSVLRNRDTLARNGG 480

Query: 178 EEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPIST 235
           +EF+    G S  +EA  +A  L + I         G ++ I +S GI    H       
Sbjct: 481 DEFSIVLPGLSHPEEAEAMARRLIETIR--PPFTVHGHNLSIGLSIGITLAQHGMTSPDY 538

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           ++  AD ALY AK++GRNR   F+    +T 
Sbjct: 539 LLRCADMALYAAKRNGRNRFEHFTKAMGDTA 569


>gi|326795863|ref|YP_004313683.1| diguanylate cyclase with extracellular sensor [Marinomonas
           mediterranea MMB-1]
 gi|326546627|gb|ADZ91847.1| diguanylate cyclase with extracellular sensor [Marinomonas
           mediterranea MMB-1]
          Length = 734

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 59/182 (32%), Positives = 81/182 (44%), Gaps = 14/182 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           E+  +   +  L   D L+GL N       +         Y   L ++  DID+FK +ND
Sbjct: 551 EMHAAKQELELLVSQDYLTGLFNRKKLDELMARECIESKHYGRPLGVIMIDIDHFKDVND 610

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGD VI  ++  L         VGR GGEEF      +   E    A  +R  + 
Sbjct: 611 TYGHSVGDDVIGCIARLLKQHARPSDKVGRWGGEEFMVLCPNTPPDELIAFAEMIRAQVS 670

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +  I I        TIS G+A     E +  +  RAD ALYVAK +GRNRV     +E +
Sbjct: 671 SYDITIVGTK----TISLGLAVLEPFETVVELHKRADNALYVAKNNGRNRVEF---LEPS 723

Query: 265 TC 266
            C
Sbjct: 724 AC 725


>gi|313105738|ref|ZP_07792001.1| hypothetical protein PA39016_000110035 [Pseudomonas aeruginosa
           39016]
 gi|310878503|gb|EFQ37097.1| hypothetical protein PA39016_000110035 [Pseudomonas aeruginosa
           39016]
          Length = 818

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 11/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            +        R+S  +  D L+GL N   F       +  L   + + +++F D+D FK 
Sbjct: 359 DMTRERQYMARLSWQATHDALTGLTNRREFEYRLQIALERLERNSGRHALMFLDLDQFKL 418

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD+++  +   L         + RLGG+EF         ++A  +A+ LRK
Sbjct: 419 VNDTCGHAAGDELLRQVCTLLQQGLREGDTLARLGGDEFGILLENCPAEKAVEIADHLRK 478

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF-- 258
            +++     S G   + T+S G+         +   +  AD A Y+AK+ GRNRV  F  
Sbjct: 479 TVQDLHFTWS-GQPFNCTVSVGLVHLLPGISTLEEALRSADMACYMAKEKGRNRVQVFHQ 537

Query: 259 SDIE 262
            D+E
Sbjct: 538 DDVE 541


>gi|83312400|ref|YP_422664.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82947241|dbj|BAE52105.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Magnetospirillum magneticum AMB-1]
          Length = 466

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 58/195 (29%), Positives = 98/195 (50%), Gaps = 12/195 (6%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYN 126
           I++ +S +L  ++    +   +S   + +LS+ D L+ L N +         ++      
Sbjct: 274 IALGLSAVLAVVAYWGWRMRKLSRE-LDRLSQTDNLTNLPNRTRLNLQFPIELARARRLG 332

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           + LS++  D+D+FK+IND FGH VGDKV+  ++D +           R GGEE       
Sbjct: 333 QGLSLIMIDVDHFKRINDEFGHLVGDKVLIAMADLVRRSVRAIDLPARWGGEELVVLCPD 392

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
           S   +A ILA  +R+ + +   +         T+S G+A     + I  ++ RADQALY+
Sbjct: 393 SHLDQALILAERIRQAVRDHDFDTGRRQ----TVSIGVATLGPSDDIDQLLNRADQALYI 448

Query: 247 AKKSGRNRVVCFSDI 261
            K SGR+RV   +D+
Sbjct: 449 GKSSGRDRVCSEADL 463


>gi|312881671|ref|ZP_07741449.1| GGDEF family protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370734|gb|EFP98208.1| GGDEF family protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 347

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 74/259 (28%), Positives = 120/259 (46%), Gaps = 10/259 (3%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIA---TVIFIANIFLFYIGLTPFYGLEYILVENL 69
           L  +     F    +   F + F + +      + I   F+  +G+  +      L  N 
Sbjct: 85  LATKVYPMEFGIFLWTCLFPVVFYLILGRRCGALAIGTAFVVQVGILSYEVTNDDLANNA 144

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-- 127
            LVI    + + +   S  +  +  +S   + QL+  D L+G+ N  A + +   Y    
Sbjct: 145 QLVINFSLVFVAIWATSHVLEVKRRLSETSLGQLASRDALTGVYNRHALVHNYDHYRRSG 204

Query: 128 ---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
               LS++  D+DYFK +ND FGH VGD+V+   +  +  + G    V R+GGEEF  A 
Sbjct: 205 SKIPLSLLILDLDYFKAVNDKFGHDVGDRVLVETATLIDGLSGEH-LVYRIGGEEFCIAL 263

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +   EA   A  LR+ IE+   N    P I +T S G+    H   + +++  AD+ L
Sbjct: 264 HDTGSNEARDKAEQLRQAIESYIFNNEENP-IALTASIGVYYCNHFSNLESVLKAADKEL 322

Query: 245 YVAKKSGRNRVVCFSDIEN 263
           Y AKK+GRN+V+ + D E 
Sbjct: 323 YKAKKNGRNQVMVYCDDEQ 341


>gi|257094134|ref|YP_003167775.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046658|gb|ACV35846.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 439

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 12/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
             + E  ++  R+  L+  D L+ L N +     L             L+++F D+D FK
Sbjct: 252 QDISERKVTEERVQHLAHHDQLTDLPNRALLSDRLAQAVAQARRDRGTLALMFLDLDQFK 311

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSS-EQEAAILAND 198
            +ND  GH VGD ++  ++ +L          V RLGG+EF           +A ++A  
Sbjct: 312 PVNDTLGHDVGDLLLKEVALRLQSCVPRESDTVSRLGGDEFVILLAQMDKAADAVVVAGK 371

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   ++  +        I I+ S GIA    H E ++ ++  AD A+Y AKK+GRN    
Sbjct: 372 ILAALQ--RPFAIGPHEIGISASLGIAVYPQHGEDVNRLLKNADTAMYHAKKAGRNCYRF 429

Query: 258 F 258
           F
Sbjct: 430 F 430


>gi|226944938|ref|YP_002800011.1| cyclic di-GMP signal transduction protein [Azotobacter vinelandii
           DJ]
 gi|226719865|gb|ACO79036.1| cyclic di-GMP signal transduction protein [Azotobacter vinelandii
           DJ]
          Length = 834

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 12/191 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDID 137
           I    + E   + ++I Q++  D L+GL N + F +             + L+++F D+D
Sbjct: 385 ILIRDVTEQARNQSKIEQMAHFDALTGLPNRTLFNTCFDVEATRCEKQRQPLALIFMDLD 444

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND+ GH VGD ++  L+ +L  V      V R GG+EF      +  + A  +  
Sbjct: 445 NFKNVNDSLGHKVGDALLVELAARLEKVLRPRDMVSRQGGDEFMFLLPEADVRTAEQMTE 504

Query: 198 DLRKIIENSQINISSGP-SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
            +++ +E   + I  G  ++H++ S GI         + T+   AD A+Y AK+  R+  
Sbjct: 505 CIKRSVE---VPIQVGQYTLHVSASMGICMFPQDGRDLETLSSHADIAMYRAKQERRSHY 561

Query: 256 VCFSDIENNTC 266
             FS+      
Sbjct: 562 AFFSEEMQACA 572


>gi|330973494|gb|EGH73560.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 630

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 19/214 (8%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +G   +L  ++  + ++ T  LL+   +   +  L  +  +I  L+  D L+GL N +  
Sbjct: 245 HGAPLVLDISVEFITLNNTACLLM---NARDIGALKNAQAQIQHLAYHDPLTGLPNRALL 301

Query: 119 ISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           +  L          N + +++F D+D+FK IND+ GHPVGD V++ ++ +L         
Sbjct: 302 LDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 361

Query: 172 VGRLGGEEFAAAALGSS------EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
           V RLGG+EF     G         ++   LA++LR ++         G  + +T S G+ 
Sbjct: 362 VARLGGDEFVVLICGLEGSQGEVTRQVRELADNLRNLLAEPMF--LDGHRLQVTPSIGVV 419

Query: 226 ERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
                    + ++ RAD ALY AK  GRN    F
Sbjct: 420 LIPDDGLTPADLLKRADIALYRAKDCGRNASQFF 453


>gi|298249633|ref|ZP_06973437.1| diguanylate cyclase [Ktedonobacter racemifer DSM 44963]
 gi|297547637|gb|EFH81504.1| diguanylate cyclase [Ktedonobacter racemifer DSM 44963]
          Length = 697

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 58/180 (32%), Positives = 88/180 (48%), Gaps = 9/180 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQIN 143
           +L E+   Y   ++ +  D ++ L NH A +S+L            +I+F D+D FK+IN
Sbjct: 517 LLMEVDRLYREQARAATTDPVTELPNHRAIMSTLNVVFTECRQRTCAILFVDVDRFKRIN 576

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGD ++  +  +L         VGR GGEEFA     ++   A  +A  LR+ +
Sbjct: 577 DRWGHQVGDCILHEVGQRLRASLRADDTVGRYGGEEFAVILRDTNLDLAMSVAERLRRAL 636

Query: 204 ENSQINIS---SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           E               H+TIS GIA    H      ++ RAD A+Y AK++GRN V   +
Sbjct: 637 EERPCCWQTEGERHETHVTISVGIALYPDHASTPDQLMKRADLAMYRAKQAGRNCVCIAT 696


>gi|190893956|ref|YP_001980498.1| sensory box GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190699235|gb|ACE93320.1| putative sensory box GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 539

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 67/210 (31%), Positives = 103/210 (49%), Gaps = 15/210 (7%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYN----RISQLSRIDCLSGLLNHS 116
           L  IL     L+I++ T+ L+L      ++  L          +   ++ D L+GL N  
Sbjct: 305 LTRILALCAGLLILA-TLVLVLAARGLRLIDRLTQDREALVGELRNAAQTDLLTGLYNRR 363

Query: 117 AF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            F       ++     +  +S+V FD+D+FK+IND  GH  GD V+  ++      F + 
Sbjct: 364 GFEVAASALLTQAEHGSRWISVVLFDLDHFKKINDLNGHDAGDAVLRHVAGVARENFRSF 423

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
             + R GGEEF A    S+   AA++A  +R  IE ++I + SG  + +T S G A R +
Sbjct: 424 DLLVRHGGEEFLALLPDSTPDGAAVVAERVRLAIEMAEIALPSGERLKVTASFGCAGRAN 483

Query: 230 K---EPISTIIYRADQALYVAKKSGRNRVV 256
                    ++ RAD ALY AK SGRN VV
Sbjct: 484 DGASRNFEDLVKRADLALYAAKASGRNCVV 513


>gi|170728605|ref|YP_001762631.1| diguanylate cyclase/phosphodiesterase [Shewanella woodyi ATCC
           51908]
 gi|169813952|gb|ACA88536.1| diguanylate cyclase/phosphodiesterase [Shewanella woodyi ATCC
           51908]
          Length = 796

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 114/242 (47%), Gaps = 22/242 (9%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL------LGYISGSILKE-- 92
           +  FIA I L  + L    GL Y++  N + +++   ++ +      L   +  +L+E  
Sbjct: 294 SAWFIAGISL--LALPVMLGLLYLMRVNNTNLVLQTQVASVSEQQQKLTNQNVLLLEEVD 351

Query: 93  -LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
               S N+++  +  D L+GL N +  +S L          N K+ ++F D+D FKQ+ND
Sbjct: 352 KRKASENKLAYQATHDELTGLANRTHSMSRLAQSIESAQVNNTKVLVMFLDLDNFKQVND 411

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKII 203
             GH  GD+++   S +L+        V R GG+EF         Q  A +LA+ +  + 
Sbjct: 412 TVGHHAGDELLKLTSKRLLNSVRNTDTVARFGGDEFLIIIPELPHQNMAKMLASSILTLF 471

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           E  Q     G    ++ S G++      +  +T++ +AD +LY AK +GRN    ++D  
Sbjct: 472 E--QAFKIEGQEFFVSTSIGMSIYPQDGDTAATLLKKADTSLYRAKDAGRNGFSFYNDSM 529

Query: 263 NN 264
           N 
Sbjct: 530 NQ 531


>gi|74317287|ref|YP_315027.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056782|gb|AAZ97222.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) and Response Regulator
           Receiver modulation [Thiobacillus denitrificans ATCC
           25259]
          Length = 705

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 92/196 (46%), Gaps = 23/196 (11%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           +    + E   +  +I +L+  D L+ L N  +F+  L           +KL+++F D+D
Sbjct: 240 VLARNITERKAAEQKIYELAFFDSLTHLPNRQSFLERLAQDIRVAQREKQKLAVLFMDLD 299

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF------------VGRLGGEEFAAAAL 185
            FK +ND  GH  GD ++   +++L                     + RLGG+EF A   
Sbjct: 300 GFKGVNDTMGHDAGDLILQSAAERLRNSIRPGDSASRLAEDGAQVGLARLGGDEFTAVIP 359

Query: 186 G-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQA 243
           G + E++A  +AN +R+ +      + +G  + +T S GIA   H     +T++  AD A
Sbjct: 360 GITHEEDALRVANRIREQMRT--PFVLAGSEVVLTSSIGIAVFPHDGADAATLLKHADTA 417

Query: 244 LYVAKKSGRNRVVCFS 259
           +Y AK  GR+    +S
Sbjct: 418 MYHAKSCGRDNCQFYS 433


>gi|206601940|gb|EDZ38422.1| Diguanylate cyclase/phosphodiesterase [Leptospirillum sp. Group II
           '5-way CG']
          Length = 702

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 14/215 (6%)

Query: 64  ILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           I + +  ++ I + +SL+  +++     ++  L  +  ++  L+  D L+ L N +    
Sbjct: 221 IGLASFMILAIGLILSLVDSHLATRTAGLVGSLKAANEKLHYLALHDGLTRLPNRTLLED 280

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            +              S+ F D+D FK IND+ GH  GDKV+  ++ +L    G    V 
Sbjct: 281 RVDQAIRHARGVDGAFSVFFLDVDRFKPINDSLGHSTGDKVLQQMARRLSGTVGPEDTVA 340

Query: 174 RLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-E 231
           R+GG+EF           +   +A  +R  +  +      G S+ +T S GI+   H   
Sbjct: 341 RIGGDEFVIVFPEQKDPGKVHEIARKIRDCVAENM--EVDGQSLSVTTSIGISLFPHDGT 398

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              T++  AD A+Y AK  G  ++  +S   N++ 
Sbjct: 399 TFRTLLASADSAMYYAKSKGSGQIQFYSGELNDSA 433


>gi|126657184|ref|ZP_01728350.1| GGDEF family protein [Cyanothece sp. CCY0110]
 gi|126621455|gb|EAZ92166.1| GGDEF family protein [Cyanothece sp. CCY0110]
          Length = 509

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 64/233 (27%), Positives = 104/233 (44%), Gaps = 28/233 (12%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK-----------------EL 93
           + +   P +G  +  +  L + I  I I+ L G +  S+ K                 +L
Sbjct: 254 WQLAAIPVHGWPFYSLSMLWITIGGIIIAFLTGLLIFSLTKTLLQLNQEIKERKEVELQL 313

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
             +   +S+L+ +D L+ + N   F        + L    E LS++  D+DYFK+ ND +
Sbjct: 314 TKTNKELSKLASLDGLTQIANRYYFDTYLKKEWNRLSRQREPLSLILCDVDYFKKYNDRY 373

Query: 147 GHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           GHP GD+ +  ++  +            R GGEEFA     ++   A  +A +L+K I N
Sbjct: 374 GHPQGDECLKQVAKAIEKAAQRPADLAARFGGEEFAMILPKTNLDGAIKVAKNLQKYISN 433

Query: 206 SQINISSGP-SIHITISAGIA-ERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
            ++       + +IT+S GIA   CH       +I  AD ALY +K  GRN  
Sbjct: 434 LKLEHKQSQINQYITLSIGIAHTHCHPFYSSQKLIDAADHALYRSKNKGRNCY 486


>gi|317152638|ref|YP_004120686.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942889|gb|ADU61940.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
          Length = 958

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 11/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + ++     +++     D L+GL N    +  L            K++++F D+D FK+
Sbjct: 510 DISDMKHKEEQLAHHLYHDGLTGLPNRVLVLDRLSMALSHANRTGTKVAVLFLDLDNFKK 569

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLR 200
           IND+FGH  GD ++  ++++LV ++     V R GG+EF    +   E+ E   LA  L+
Sbjct: 570 INDSFGHAQGDTLLKAVAERLVALYRDEDTVARQGGDEFLVVVVDVHEEREVVDLAEGLQ 629

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++ E  +  +  G  + IT S G+       +  ++++  AD A+Y +K  GRN    F+
Sbjct: 630 RVFE--EPFVIKGQEVFITPSIGVTLYPDDGQDPASLVKNADMAMYQSKAKGRNSYFLFT 687

Query: 260 DIENN 264
              + 
Sbjct: 688 QQMSE 692


>gi|126661571|ref|ZP_01732610.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with GAF sensor and FHA domain [Cyanothece sp.
           CCY0110]
 gi|126617143|gb|EAZ87973.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with GAF sensor and FHA domain [Cyanothece sp.
           CCY0110]
          Length = 469

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            +     +   +   +  D L+ L N + F   L          +  ++++F D+D FK 
Sbjct: 29  DITARKRAEENLEYRAFYDTLTDLPNRNYFDEKLEVALVEAKKNDYLMALLFLDLDSFKN 88

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND  GH +GD+++   + +L         V R GG+EF        S ++   LA  + 
Sbjct: 89  VNDTLGHKIGDQLLKSFAQRLSCCVRNDDVVSRWGGDEFTLLLPQINSPEDTINLAQRIL 148

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++  Q    SG  ++I  S GIA      E   T++  AD ALY AK+ GRN    + 
Sbjct: 149 DDLK--QPFEISGHQLYIKTSIGIAIYPQDGEDAETLLKNADAALYRAKERGRNHYRFYR 206

Query: 260 DIENNTC 266
               +  
Sbjct: 207 STMTSKA 213


>gi|119945531|ref|YP_943211.1| diguanylate cyclase with PAS/PAC sensor [Psychromonas ingrahamii
           37]
 gi|119864135|gb|ABM03612.1| diguanylate cyclase with PAS/PAC sensor [Psychromonas ingrahamii
           37]
          Length = 654

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 86/179 (48%), Gaps = 10/179 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E      R+ + +  D L+ L N       L           + L+I+F D+D FK 
Sbjct: 476 DITEQKKIQMRLDKEASYDHLTHLPNRRLLNDRLKQAIAFSKRTQKNLAILFIDLDGFKS 535

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH VGD ++  +S ++         VGRLGG+EF        E  A  +AN +  
Sbjct: 536 INDSHGHQVGDWLLTEVSKRIQYCLRATDTVGRLGGDEFVVVLPEIYEN-AKEVANKILN 594

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +E     I++   +HI+ S G+A      +  + ++  AD+A+Y AKK GRN+VV F 
Sbjct: 595 SLEE-PFVITNNGVLHISSSIGVAIYPLDAKSQTMLMECADKAMYEAKKRGRNKVVFFD 652


>gi|89901664|ref|YP_524135.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Rhodoferax ferrireducens T118]
 gi|89346401|gb|ABD70604.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 1114

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 12/189 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
           G  + E   +  +I +L+  D L+ L N    +  L          +   +++F D+D F
Sbjct: 668 GRDISERKRAEEKIERLAFYDVLTDLPNRRLLMDRLQQALVSSAREHGAGALLFIDLDNF 727

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL--AN 197
           K +ND  GH VGD ++  ++ +L+        V RLGG+EF     G    +A  +    
Sbjct: 728 KDLNDTQGHDVGDALLQQVAKRLLASVRETDTVARLGGDEFVVMLQGLERTQADAITQVE 787

Query: 198 DL-RKIIENS-QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
            + RKI+    Q         H T S G+      ++ +  ++ +AD A+Y AK +GRN 
Sbjct: 788 QVGRKIMAQLNQPYRLGSAEHHSTPSIGVTLFDNQQQTLDDLLKQADLAMYEAKSAGRNT 847

Query: 255 VVCFSDIEN 263
           +  F     
Sbjct: 848 LRFFDPTMQ 856


>gi|317054192|ref|YP_004118217.1| diguanylate cyclase [Pantoea sp. At-9b]
 gi|316952187|gb|ADU71661.1| diguanylate cyclase [Pantoea sp. At-9b]
          Length = 369

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 67/273 (24%), Positives = 116/273 (42%), Gaps = 28/273 (10%)

Query: 12  WLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYI-------------GLTPF 58
            L     + S   +   +Y+ + F+  +  ++ +  +   Y                 P 
Sbjct: 96  LLIVISLIWSLCCYCCAVYWQLPFTYPLGVILLLTAMAALYFYPKGLLGYLLPLWLTLPI 155

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ----------LSRIDC 108
             ++     N    II +  +L+L Y    +L+    ++ R  Q          L+  D 
Sbjct: 156 VSVQLNQGINPRFAIIWLIFTLILLYGRYMLLRWFNEAWQRYEQNQLLISRLDILAHQDG 215

Query: 109 LSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           L+G  N  A    L          S++  D+DYFK+ ND++GH  GD+ +  ++  L   
Sbjct: 216 LTGTANRRALEQHLAQAITQQRPFSLIMLDVDYFKRYNDHYGHQAGDECLVAVAAVLKEA 275

Query: 166 FGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAG 223
             TP   VGR GGEEF    L ++  +A  +A  +++ ++   +  +    +  +T+S G
Sbjct: 276 VRTPEDVVGRYGGEEFVVMLLDATAAQAEAVAERIQQQLQQRGLAHAKSEVAAQVTVSQG 335

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           IA          +I +ADQALY AK+ GRNR V
Sbjct: 336 IASAAPGRTADQLIAQADQALYRAKQQGRNRWV 368


>gi|217970096|ref|YP_002355330.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
 gi|217507423|gb|ACK54434.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
          Length = 1050

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 15/181 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S +  L      +++++  D L+G  N       L           + L++   D+D FK
Sbjct: 593 SDISRLKKHEEELNRIAYFDPLTGAPNRRLLDDRLRQAIAHSRRTGKPLAVCVIDLDGFK 652

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
            +ND  GH  GD+V+  + D+L  +      V RLGG+EF         E+    +   +
Sbjct: 653 PVNDQLGHEAGDQVLIGIVDRLGAILRASDTVARLGGDEFVLLLEDIEGERVLERVLEAI 712

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           R  I        +   + ++ S G+      +    T++  ADQA+Y AK+ GRN +  F
Sbjct: 713 RTPIA------LASQQVCVSASIGVTLFPEDDADPDTLLRHADQAMYRAKQRGRNCIQFF 766

Query: 259 S 259
            
Sbjct: 767 D 767


>gi|84622981|ref|YP_450353.1| response regulator [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84366921|dbj|BAE68079.1| response regulator [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 502

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 92/198 (46%), Gaps = 14/198 (7%)

Query: 71  LVIISITISLLLG--YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE- 127
           +V+ ++   LLLG        L+ +  +  ++S  + +D L+G+ N  AF   L    + 
Sbjct: 302 IVVAALGCVLLLGVGIWLDLQLRRMHRNEAQLSTEAWVDALTGIANRRAFDDRLSRALQD 361

Query: 128 ------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEF 180
                  LS++  D+D+FK  ND +GH  GD  +  ++  +            R GGEEF
Sbjct: 362 AIRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRVIAGTIAACSRRSEDVAARYGGEEF 421

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKE---PISTI 236
                 +    A  LA+ +R  +    +   S P S H+T+S G+A     E     + I
Sbjct: 422 GMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGVATFEPGEAPLSPNAI 481

Query: 237 IYRADQALYVAKKSGRNR 254
           ++ AD ALY AK+ GRNR
Sbjct: 482 VHDADSALYRAKQKGRNR 499


>gi|114564926|ref|YP_752440.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella frigidimarina NCIMB 400]
 gi|114336219|gb|ABI73601.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella frigidimarina NCIMB 400]
          Length = 1487

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 11/203 (5%)

Query: 73   IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSY 125
            + ++  S L   +  S + E   +   + +L+  D L+GL N + F       I +    
Sbjct: 1025 MFNMNGSALHYVVVFSDITERKHNELHLRRLANNDMLTGLANRAMFSRRLGQVIETAKQQ 1084

Query: 126  NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
             E L+++F D+D FK +ND++GH +GD ++   + +L         + R GG+EF     
Sbjct: 1085 KETLALLFLDLDRFKHVNDSYGHSMGDALLVEAASRLQSCLSEEHLLCRFGGDEFVILLR 1144

Query: 186  GS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQA 243
             +        +A  L K IE +   +  G    I+ S GI+     +    T+I  AD A
Sbjct: 1145 DAKDVDTINHIAKQLLKQIE-TPFKLY-GREFFISTSIGISIWSDDDQTPETLIKNADLA 1202

Query: 244  LYVAKKSGRNRVVCFSDIENNTC 266
            +Y AK+ GR     +S   N   
Sbjct: 1203 MYHAKEEGRGHFQYYSAERNAEA 1225


>gi|327481276|gb|AEA84586.1| sensory box protein [Pseudomonas stutzeri DSM 4166]
          Length = 829

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 55/193 (28%), Positives = 83/193 (43%), Gaps = 11/193 (5%)

Query: 81  LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVF 133
           LLGY  + S + E   +  R+  LS+ D L+GL N S     L            L++++
Sbjct: 381 LLGYRGTASDVTEETRAQARVQYLSQHDALTGLPNRSRLRDYLEQNLASLRSGSTLTLLY 440

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EA 192
            D+D FK +ND  GH  GD+V+  ++ +L         V RLGG+EF        E  + 
Sbjct: 441 IDLDRFKPVNDTLGHAAGDEVLIGVASRLRERTRDGDLVARLGGDEFVVVLHRMGEDNDI 500

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSG 251
             L N +   +  S   I     I I  S G+A         + ++  AD ALY AK +G
Sbjct: 501 DRLCNRIIDAL--SAPFIYEDQQISIGASIGVALAPTDANQANELLRCADIALYQAKDAG 558

Query: 252 RNRVVCFSDIENN 264
           R     +    + 
Sbjct: 559 RGTWRAYGREMDQ 571


>gi|157376393|ref|YP_001474993.1| GGDEF domain-containing protein [Shewanella sediminis HAW-EB3]
 gi|157318767|gb|ABV37865.1| FOG: GGDEF domain-like protein [Shewanella sediminis HAW-EB3]
          Length = 702

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 14/194 (7%)

Query: 81  LLGYISGSI--LKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSI 131
           L+ +  GSI  + E   S  ++ Q +  D L+ L N        +  +S+     +K ++
Sbjct: 511 LISHYLGSIEDITEKKESEEKLIQQATFDTLTQLPNRFLAEYRLNQTLSAAQRDGKKGAL 570

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQ 190
           +F D+D FK++ND  GH  GD+++  ++  +         V RLGG+EF          +
Sbjct: 571 LFLDLDNFKEVNDTLGHHAGDELLKRVATLMKNAVRKEDTVARLGGDEFLVILNHIQKRE 630

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKK 249
           +A  +A  + K++      +    SI ++ S GIA           ++ +AD A+YVAKK
Sbjct: 631 DAESVAGKIIKLVAQEP--LIENCSIKVSASIGIAVFPDDATKAKKLMQKADTAMYVAKK 688

Query: 250 SGRNRVVCF-SDIE 262
            G+NR   F S+ E
Sbjct: 689 QGKNRFSFFKSEDE 702


>gi|319427864|gb|ADV55938.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella putrefaciens 200]
          Length = 1487

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 13/192 (6%)

Query: 85   ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
            +  S + E   +   + +L+  D L+GL N S F + L           EKL+++F D+D
Sbjct: 1037 VVFSDITERKRTEADLRRLANYDVLTGLPNRSLFSNRLLQSIQVAQQTGEKLALLFLDLD 1096

Query: 138  YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILA 196
             FK +ND++GH +GD ++   S++L     +   + R GG+EF      +S   E   +A
Sbjct: 1097 RFKHVNDSYGHSMGDALLVEASNRLQSCISSEHLLCRFGGDEFVILLRNASNIDEINHIA 1156

Query: 197  NDLR-KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
              L  +I+   ++    G   +I+ S GI+            I  AD A+Y AK+ GR  
Sbjct: 1157 ERLLAQIVAPFKLF---GREFYISTSIGISIWPDDAIQPEAFIKNADLAMYHAKEEGRGN 1213

Query: 255  VVCFSDIENNTC 266
               +S   N   
Sbjct: 1214 FKYYSSERNAQA 1225


>gi|320332789|ref|YP_004169500.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
 gi|319754078|gb|ADV65835.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
          Length = 643

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 98/251 (39%), Gaps = 22/251 (8%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPF-YGLEYILVENLSLVIISITISLL------ 81
           +Y   FF  FI        IFL  + LT   Y   +    +L L+   I +SL       
Sbjct: 122 VYVLSFFVPFIRAAQIGNIIFLGGVTLTAAAYAFTHHRTLDLELLNALIQLSLANLTFFG 181

Query: 82  LGYISGSI---LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---------L 129
           L  +S  +      L      +  L+  D L+GL N       L                
Sbjct: 182 LARLSHRLSGHYARLATHTETLQHLASTDPLTGLPNRLHLERVLQRALHPDPPTTDPAPF 241

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S+V+ D+D FK IND  GH  GD V+   + +L         + R+ G+EF A   G  +
Sbjct: 242 SVVYIDLDGFKLINDTLGHEAGDHVLIDTASRLRSCCRAHDIIARISGDEFVAYLPGIHQ 301

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAK 248
             A ++A      +E        G   H+T S GI A   H    + ++  AD A+Y  K
Sbjct: 302 DMAEMVAYRFLAALE--PPFTIDGQVTHLTASLGISAHPDHGHDAAALLRHADSAMYRVK 359

Query: 249 KSGRNRVVCFS 259
             GRN V  ++
Sbjct: 360 SEGRNGVGVYT 370


>gi|171060573|ref|YP_001792922.1| diguanylate cyclase [Leptothrix cholodnii SP-6]
 gi|170778018|gb|ACB36157.1| diguanylate cyclase [Leptothrix cholodnii SP-6]
          Length = 370

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 99/202 (49%), Gaps = 9/202 (4%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           L + ++    + ++S  ++ L   ++     +L  ++ RI QL+  D L+GL N  A + 
Sbjct: 168 LVFAVIVFGGMWVLSDRLARLRARLT-RKRTDLSEAFERIRQLATRDDLTGLPNRRALMD 226

Query: 121 SL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           SL           + +++V  D+D+FK IND  GH  GD V+   +++ +     P  + 
Sbjct: 227 SLVNETARQARLGQPIALVAIDLDHFKAINDEHGHKAGDAVLRGFAERALTELRGPDVLA 286

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEF      ++  +A      LR+ +  +  +    P + +T SAG+        I
Sbjct: 287 RWGGEEFLLLLPDTTVTQALSCVQRLRERLVLTPFD-EVQPGLRVTFSAGVTRCLGGGDI 345

Query: 234 STIIYRADQALYVAKKSGRNRV 255
              I RAD+A+Y AK +GR+RV
Sbjct: 346 DAAIERADRAMYRAKAAGRDRV 367


>gi|34495842|ref|NP_900057.1| hypothetical protein CV_0387 [Chromobacterium violaceum ATCC 12472]
 gi|34330267|gb|AAQ58065.2| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 334

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 89/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           S L+E+ +    + + +  D L+GL N       L          + +++++  D D+FK
Sbjct: 149 SHLREIELLQQGLREQALRDPLTGLFNRRHLDDILPRVLAHMLALHREVAVLMVDADHFK 208

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD V+  L   L   F +   V R GGEEF     G++ + A   A  LR
Sbjct: 209 RINDTYGHRCGDAVLTALGACLSDHFRSGDIVCRYGGEEFFVLLPGATLEAAYAKAEGLR 268

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +    +  + G S+ +T+S G+A    H     +++  AD+ALY AK+ GR+RV  
Sbjct: 269 RAVGERPME-ALGHSLAVTLSIGLALCPLHGSDAESVVRAADEALYQAKRQGRDRVCV 325


>gi|330898879|gb|EGH30298.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 663

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 102/234 (43%), Gaps = 19/234 (8%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS-------LLLGYIS-GSILKELF 94
            F A ++        + G      +N  L    +TIS       LL  +++  + +  L 
Sbjct: 319 AFYAAMWHQLTAEGHWQGEISNRRKNGELYPSWLTISAVRNKDDLLTHFVAVFADISSLK 378

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147
            +  R+   +  D L+GL N   F S L +            +++F D+D FK IND+ G
Sbjct: 379 HAQARLDYQAHHDPLTGLPNRILFESRLQAALLHSEESGSLGAVLFLDLDRFKHINDSLG 438

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206
           HPVGD ++  ++ +L         V RLGG+EF     G     +A  +AN L      +
Sbjct: 439 HPVGDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQASDAQAIANKLLACF--N 496

Query: 207 QINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               +    ++I+ S G          ++T++  AD A+Y +K  GRNRV  ++
Sbjct: 497 TPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKAKGRNRVESYT 550


>gi|91779794|ref|YP_555002.1| diguanylate cyclase [Burkholderia xenovorans LB400]
 gi|91692454|gb|ABE35652.1| Putative diguanylate cyclase (GGDEF domain) [Burkholderia
           xenovorans LB400]
          Length = 432

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 88/175 (50%), Gaps = 5/175 (2%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQIND 144
             + +       + + +  D L+GL N   F+  +      ++ LS+   DID+FK+IND
Sbjct: 257 RDITDRARQMELLKKQAVTDALTGLPNRREFLEFVDKVLGTDDVLSVFILDIDFFKKIND 316

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           ++GH +GD+V+  L+   + +        R GGEEF AA  G+    A   A ++R+ IE
Sbjct: 317 SYGHDIGDEVLRVLAKVGMSITHGSNLFARWGGEEFVAALPGADVGLAHRFAEEVRERIE 376

Query: 205 NSQINIS-SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
                 +     I  T+S G+  R   E  +  ++ RAD+ALY AKK GRNRV  
Sbjct: 377 QQDFEHAWHLKPIPFTVSIGVVTRAEGERDVDALMKRADRALYRAKKLGRNRVEV 431


>gi|109899014|ref|YP_662269.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109701295|gb|ABG41215.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
          Length = 339

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 69/265 (26%), Positives = 123/265 (46%), Gaps = 22/265 (8%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60
            T + K  L  WL          P    +   I        V  IA + +    L+    
Sbjct: 88  FTVAFKAALYTWLF-------LIPVLSYLLLGITLGNVFTCVYVIAGVAILCRALS---- 136

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI- 119
            E   +  +S+V IS+ +S +   +S +   +      R+ Q++ +D L+GL N      
Sbjct: 137 FESSEIPLISVVNISLCLSAIWA-LSYTYESKRAAMVKRLQQMASVDPLTGLNNRLLLDS 195

Query: 120 ------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                  SL    + +S++  D+D+FK++ND +GH +GDKV+  ++  +        +  
Sbjct: 196 SFEMLCESLPEQQQTVSMLLIDLDHFKKVNDEYGHDIGDKVLIEVARLINETRRLNDWAF 255

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           RLGGEEF      +SEQ+A  +A  +R I+E     + +   + I++S G++      + 
Sbjct: 256 RLGGEEFCMLIPDTSEQQAKNIAERIRLIVEKDI--LINSKDMKISVSIGVSHWPEDGQT 313

Query: 233 ISTIIYRADQALYVAKKSGRNRVVC 257
           ++ I   AD+ LY AK++GRN+V+ 
Sbjct: 314 LNQIYKLADERLYKAKETGRNKVIA 338


>gi|192289273|ref|YP_001989878.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris TIE-1]
 gi|192283022|gb|ACE99402.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris TIE-1]
          Length = 879

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 57/190 (30%), Positives = 83/190 (43%), Gaps = 10/190 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDY 138
           I+     E      RIS L+  D L+ L N + F   L       S     ++++ DID 
Sbjct: 434 ITHEDATERKRYDERISYLAHFDSLTDLPNRTMFRQRLENELQRASRGAPFALLYIDIDE 493

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILAN 197
           FK IND  GHPVGD+++  ++ +L        FV RLGG+EFA   +G S   EA  L +
Sbjct: 494 FKSINDTLGHPVGDELLKQVAVRLRDCVRETDFVARLGGDEFAIIQIGVSGADEATALVD 553

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            + + I      +  G  +    S GIA        +  ++  AD A+Y AK  GR    
Sbjct: 554 RIYESIRLPYQCL--GHQLSTDASIGIAIAPRDGADLDQLVKNADLAMYSAKAEGRRTFR 611

Query: 257 CFSDIENNTC 266
            F    +   
Sbjct: 612 FFEPEMDAVA 621


>gi|229586486|ref|YP_002844987.1| response regulator PleD [Rickettsia africae ESF-5]
 gi|228021536|gb|ACP53244.1| Regulatory components of sensory transduction system [Rickettsia
           africae ESF-5]
          Length = 450

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 89/191 (46%), Gaps = 13/191 (6%)

Query: 79  SLLLGYISGSILKELFISYNR--ISQ---LSRIDCLSGLLNHSAFISSLGSYNEK----- 128
           S LL  I   + ++ +    R  + Q   L+  D L+GL N   F   L    EK     
Sbjct: 258 SELLARIRTQLRRKQYQDNLRNDLEQSVNLAVKDGLTGLFNRRYFDIHLKQIIEKTNKES 317

Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             L ++  DID FK +ND +GH  GDKV+  +S  L         + R GGEEF      
Sbjct: 318 IKLYLLMCDIDNFKHVNDTYGHQAGDKVLTIVSRILKNTLRVTDLIARFGGEEFTILLTD 377

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALY 245
               +A   A  +R  IE    +I      +  TIS G+ +   +E I + I RAD+A+Y
Sbjct: 378 IDISKAIETAERVRVKIEYMNFHIEDQIEPLKTTISIGVTKYKKEESIESFIERADKAMY 437

Query: 246 VAKKSGRNRVV 256
            AK +G+N+VV
Sbjct: 438 EAKTTGKNKVV 448


>gi|24372162|ref|NP_716204.1| sensory box/GGDEF family protein [Shewanella oneidensis MR-1]
 gi|24346060|gb|AAN53649.1|AE015503_10 sensory box/GGDEF family protein [Shewanella oneidensis MR-1]
          Length = 324

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 75/270 (27%), Positives = 122/270 (45%), Gaps = 29/270 (10%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63
              D  + WL  ++ +ES     FM+    F S      +F       +    P  G   
Sbjct: 60  RFPDLPATWL--KQKMES----VFMLKNRAFISWEQRPYVFQ------FKNYRPITGRAD 107

Query: 64  ILVENLSLVIISIT------ISLLLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNH 115
            + +N++L+ ++        IS+++  ++   +   +L  +  ++ +LS+ D L+ L N 
Sbjct: 108 FMYQNVTLLPLASLTGKITHISVIVYDVTDIAVNKLQLKAANEQLERLSQTDGLTQLHNR 167

Query: 116 SAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
             +   L         Y+   S+V  DID+FK IND +GH  GDKVI  ++  L      
Sbjct: 168 RHWQQCLEHEYDLYARYSGIASLVMIDIDHFKNINDTYGHLAGDKVIQHIAHILSHSLRE 227

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
               GR GGEEFA     +   +A      LR+ I +S + +  G  I +T+S G+ E  
Sbjct: 228 TDCAGRYGGEEFAVVMPSTCGADALNFTERLREKIASSTV-VYEGLKIKVTVSLGVCELG 286

Query: 229 -HKEPISTIIYRADQALYVAKKSGRNRVVC 257
            H    S+ I  +D+ALY AK+ GRN  V 
Sbjct: 287 KHISSSSSWISCSDKALYEAKQKGRNCTVL 316


>gi|295097752|emb|CBK86842.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 694

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 112/262 (42%), Gaps = 13/262 (4%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV 72
                 +   +  T  I  +      +    F     + + G+   +    + V  L+++
Sbjct: 167 AARMALMRLGAAITMGIAIAGMHYAGMEAAQFPMLTMVHHHGINGSWLAILVSVVALAIL 226

Query: 73  IISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------ 123
            I++ +S+    +      +   L  +   ++QL+  D L+ L N       L       
Sbjct: 227 GITLLVSMFDARLQARTSLLASSLAEANRELAQLALHDTLTRLPNRILLEDRLDQAISKA 286

Query: 124 -SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                  +++F D+D FK +ND +GH VGDK++  ++ +L++       + R+GG+EF  
Sbjct: 287 DREGSPFALMFMDLDGFKTVNDAYGHDVGDKLLVAVTQRLLLQLKGQYTLARIGGDEFVL 346

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRAD 241
            A  ++  +AA LAN L ++I++          + +T+S GIA   H       +++ AD
Sbjct: 347 LAETATPDDAASLANSLVRVIDS--PFHLDPYELMVTLSIGIALYPHDGKTDRELMFNAD 404

Query: 242 QALYVAKKSGRNRVVCFSDIEN 263
            A+Y  K  GRN    F    N
Sbjct: 405 AAMYHTKHMGRNGYHFFQPSMN 426


>gi|160897594|ref|YP_001563176.1| diguanylate cyclase [Delftia acidovorans SPH-1]
 gi|160363178|gb|ABX34791.1| diguanylate cyclase [Delftia acidovorans SPH-1]
          Length = 583

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 12/174 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +L  +   +   +R D L+GLLN   F   L             LS++  D+D+FK+IND
Sbjct: 412 QLQQANAELEHQARSDPLTGLLNRRGFDFQLDFAMALARRSGRPLSVLVIDVDHFKRIND 471

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH +GD V+  L+    +       + R+GGEEF A    ++   A ++A  LR+++ 
Sbjct: 472 QHGHDMGDAVLRTLARAFRMRLRESDVLARMGGEEFLALLPDTTADAAVVIAEQLRELLA 531

Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + +         +T S G+A  R   +  + ++ R D+ALY AK +GRN V  
Sbjct: 532 TTPMAHGE----PVTASVGVATLRGTTDTATAMLRRGDEALYEAKGAGRNNVQL 581


>gi|91777942|ref|YP_553150.1| diguanylate cyclase [Burkholderia xenovorans LB400]
 gi|91690602|gb|ABE33800.1| Putative diguanylate cyclase (GGDEF domain) [Burkholderia
           xenovorans LB400]
          Length = 604

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 74/272 (27%), Positives = 124/272 (45%), Gaps = 25/272 (9%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLT-PFYGLEYI---LVEN 68
           L   K LE       ++   I   + I +V+ +    LF   LT P + L +    L   
Sbjct: 305 LGLAKPLEDVLSGANLLGNQIVRMVLIFSVLALILAILFARALTKPLHILAHAATHLFAE 364

Query: 69  LSLVIISITISLLLGYISG---SILKE-------LFISYNRISQLSRIDCLSGLLNHSAF 118
            ++  + +  +  +G ++     + +E       L      +  L+  D L+GL N   F
Sbjct: 365 HTMHTLPLNRTDEIGVLARCFERLRREIKSQMDVLHAKQRELVHLATHDVLTGLPNRVLF 424

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           +  L           E+L+++F D+D FKQIND FGH VGDKV+A ++ +L  V  +   
Sbjct: 425 MEKLENAIDEAMRRQERLAVLFVDLDRFKQINDQFGHSVGDKVLATVAHRLKQVLWSEDV 484

Query: 172 VGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
           V RLGG+EF     G    EAA  +A+ +   + N ++ +  G S+ +  S GI++    
Sbjct: 485 VARLGGDEFIVLIEGPRSGEAAPAIASRIMATL-NEEVRV-DGQSMTVGASIGISQFPED 542

Query: 231 E-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                 ++  AD A+Y AK  GR   + + D+
Sbjct: 543 SGTAEELLLNADAAMYAAKSGGRCAYMRYHDV 574


>gi|308071261|ref|YP_003872866.1| hypothetical protein PPE_04568 [Paenibacillus polymyxa E681]
 gi|305860540|gb|ADM72328.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 363

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 65/267 (24%), Positives = 112/267 (41%), Gaps = 19/267 (7%)

Query: 12  WLCHEKNLESFSPHTFMIYFSIFFSIFI------ATVIFIANIFLFYIGLTPFYGLEYIL 65
            L    N ++     FM+   +  ++           + I N+F   I L          
Sbjct: 96  LLLFGINTQAIVGAIFMMLAGLGCALLSHLSWSRLPKLIIMNVFALGIILCSLTINLKNF 155

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYN---RISQLSRIDCLSGLLNHSAFISSL 122
            + L +  +   IS++ G +   I + +  S     R+   S  D L+ L N      SL
Sbjct: 156 DDVLHVYPLQFFISMVGGCLLYLIAESINTSNELLLRLEHTSYTDHLTNLSNRRQLEFSL 215

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     +E LS++  DID+FK++ND +GH  GD V+  L   L+        V R 
Sbjct: 216 EEKLPQARQRHEHLSVLVLDIDHFKEVNDTYGHAAGDAVLRQLGQILMEKCRPNDVVTRS 275

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC---HKEP 232
           GGEEF       + ++A  +AN +   +   +  ++    + +T+S G+           
Sbjct: 276 GGEEFTVLLPNCAFRQALRIANQILSGVNQHEFILADDLVLKVTVSIGVTTFPGTGEDMS 335

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFS 259
            + ++ +AD+ALY AK +GRNRV  + 
Sbjct: 336 GAALLEQADKALYEAKNAGRNRVCSYE 362


>gi|254283017|ref|ZP_04957985.1| sensory box histidine kinase [gamma proteobacterium NOR51-B]
 gi|219679220|gb|EED35569.1| sensory box histidine kinase [gamma proteobacterium NOR51-B]
          Length = 494

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 9/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            + +      R+  ++  D L+G  N  A        +S    ++E LS+   DID+FK 
Sbjct: 309 DISDRKAVERRLKAIADKDPLTGAGNRRALESVIKSELSRAHRHDEPLSVAILDIDWFKS 368

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +NDN+GH +GD+V+  ++     +        R+GGEEFA     +S  EA  LA  LR+
Sbjct: 369 VNDNYGHLMGDRVLIDIAKLCKDLIRPYDTFARIGGEEFALLLPKTSVPEAERLAERLRQ 428

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +            + +TIS G+A        +  +I  AD+ALY AK  GRNRVV F  
Sbjct: 429 RVAEHTTQAGEN-RVQVTISIGVALLAKGAKTLEEMIESADRALYCAKLDGRNRVVTFEQ 487

Query: 261 IENN 264
           + +N
Sbjct: 488 LRSN 491


>gi|292493800|ref|YP_003529239.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291582395|gb|ADE16852.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 640

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 9/180 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           +   L EL ++  R+ Q++  D L+ L N    +  +             LS +  D+D 
Sbjct: 454 TRRYLAELAVANRRLEQMAMTDSLTALPNRRYAMERMEQAWAEYQRNGTPLSCLVVDLDL 513

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQIND++GH +GD V+  +++       +   V RLGGEEF      ++  EA  +A  
Sbjct: 514 FKQINDHYGHDIGDGVLREIANVFRSSARSSDVVCRLGGEEFFVICTNTTAAEALQVAER 573

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           LR  +++    +  G   +++IS G+A      +    +   ADQALY AK+ GR+++  
Sbjct: 574 LRHAVKSHHWTVP-GFGGNLSISVGLAASLEGMKEWDDLYRLADQALYDAKRKGRDQICM 632


>gi|229180323|ref|ZP_04307666.1| Sensory box/GGDEF family protein [Bacillus cereus 172560W]
 gi|228603070|gb|EEK60548.1| Sensory box/GGDEF family protein [Bacillus cereus 172560W]
          Length = 415

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          +EK++I+ FDID FK +
Sbjct: 239 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTV 298

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 299 NDTYGHDFGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 358

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q    S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 359 IETKQFTGIS----KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 410


>gi|119898170|ref|YP_933383.1| putative signaling protein [Azoarcus sp. BH72]
 gi|119670583|emb|CAL94496.1| conserved hypothetical signaling protein [Azoarcus sp. BH72]
          Length = 690

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 9/192 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKL 129
            ++  +     ++   +  +   ++  +  D L+GL N  AF  +L           +  
Sbjct: 245 AMARTMADAHKTLQARVDEATELLAHQALHDPLTGLPNRRAFEQALEDAVTASRRAGDSG 304

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            + F D+D FK +ND  GH  GD+++  ++  +         + R+GG+EFA    G   
Sbjct: 305 VLCFIDLDRFKIVNDTCGHAAGDELLRRIARLIRQRVRAEDLICRIGGDEFALILHGCGP 364

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAK 248
           ++A  +A ++R+ +   +     G    +  S G+          S ++  AD A Y AK
Sbjct: 365 EDAHRIAENIREAVAAFRFTW-EGRRFSVGASIGLVRIDGSLATASDVLVAADLACYAAK 423

Query: 249 KSGRNRVVCFSD 260
           KSGRNRVV   D
Sbjct: 424 KSGRNRVVEHDD 435


>gi|77359305|ref|YP_338880.1| hypothetical protein PSHAa0338 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874216|emb|CAI85437.1| conserved protein of unknown function; putative signaling protein
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 842

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 10/184 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + E   + ++I QL+  D L+GL N   F   L             L+++F D+D FK
Sbjct: 391 SDITERKNAEDKIVQLAYFDELTGLPNRRLFNDRLKMALAAAHRDQHLLAVMFIDLDRFK 450

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND+ GH  GD ++  ++ ++         + RLGG+EF      +     A LA+ + 
Sbjct: 451 EVNDSLGHSAGDCLLTLVAARIEATLNEGDTLARLGGDEFVVLCEINKIDAVASLADKIL 510

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
             + NS   +     + +T S G A          T++  AD A+Y +K  GRN    F 
Sbjct: 511 NNL-NSPFQL-DHVEVGVTASIGAAVYPDDGLDSETLLKHADIAMYRSKDVGRNSFQLFK 568

Query: 260 DIEN 263
              N
Sbjct: 569 PSMN 572


>gi|13471467|ref|NP_103033.1| hypothetical protein mll1446 [Mesorhizobium loti MAFF303099]
 gi|14022209|dbj|BAB48819.1| mll1446 [Mesorhizobium loti MAFF303099]
          Length = 263

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 107/256 (41%), Gaps = 25/256 (9%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY- 84
            F ++  +  +  + T+     +  F   L    GL+ ++  N  L    + ++  L + 
Sbjct: 9   AFFVFIFVILAAGLVTLHAYGLLQSFATELHTQSGLDKVIYLNKLLFATGVLLATALFFG 68

Query: 85  -------ISGSILKE---------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE- 127
                  I     +E         L      +   +  D L+G+ N   F  +L  Y E 
Sbjct: 69  IFFIYPLIRKQATEEGKLRAMTVSLSARSETLEHAALTDSLTGMQNRRYFDDALKEYLEE 128

Query: 128 ------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                  + ++  D+D+FKQ+ND  GH VGD+V+  ++  L  +      V RLGGEEFA
Sbjct: 129 FRRIEKPVGLMILDLDHFKQVNDTHGHDVGDEVLRAVASCLKDMTRYHDVVARLGGEEFA 188

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                      A  A  +RK I N  I +S    + IT S G+A    KE       RAD
Sbjct: 189 VVTPNMEADLLAKFAERIRKAIANMSI-LSGNVRLKITTSVGLAVWDRKETAEEFYRRAD 247

Query: 242 QALYVAKKSGRNRVVC 257
           + LY AK+ GRNRV  
Sbjct: 248 RQLYEAKRLGRNRVCA 263


>gi|330970857|gb|EGH70923.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 798

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 19/234 (8%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS-------LLLGYIS-GSILKELF 94
            F A ++        + G      +N  L    +TIS       LL  +++  + +  L 
Sbjct: 289 AFYAAMWHQLAAEGHWQGEISNRRKNGELYPSWLTISAVRNKDNLLTHFVAVFADISSLK 348

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147
            +  R+   +  D L+GL N   F S L +            +++F D+D FK IND+ G
Sbjct: 349 QAQARLDYQAHHDPLTGLPNRILFESRLQAALLHSEESGSLGAVLFLDLDRFKHINDSLG 408

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206
           HPVGD ++  ++ +L         V RLGG+EF     G     +A  +AN L      S
Sbjct: 409 HPVGDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQTSDAQAIANKLLACF--S 466

Query: 207 QINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               +    ++I+ S G          ++T++  AD A+Y +K  GRNRV  ++
Sbjct: 467 TPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKAKGRNRVESYT 520


>gi|166711280|ref|ZP_02242487.1| response regulator [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 494

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 93/198 (46%), Gaps = 14/198 (7%)

Query: 71  LVIISITISLLLG--YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE- 127
           +V+ ++  +LLLG        L+ +  +  ++S  + +D L+G+ N  AF   L    + 
Sbjct: 294 IVVAALGCALLLGVGIWLDLQLRRMHRNEAKLSTEAWVDALTGIANRRAFDDRLSRALQD 353

Query: 128 ------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEF 180
                  LS++  D+D+FK  ND +GH  GD  +  ++  +            R GGEEF
Sbjct: 354 AIRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRVIAGTIAACSRRSEDVAARYGGEEF 413

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKE---PISTI 236
                 +    A  LA+ +R  +    +   S P S H+T+S G+A     E     + I
Sbjct: 414 GMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGVATFEPGEAPLSPNAI 473

Query: 237 IYRADQALYVAKKSGRNR 254
           ++ AD ALY AK+ GRNR
Sbjct: 474 VHDADSALYRAKQKGRNR 491


>gi|120597360|ref|YP_961934.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. W3-18-1]
 gi|120557453|gb|ABM23380.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. W3-18-1]
          Length = 1487

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 13/192 (6%)

Query: 85   ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
            +  S + E   +   + +L+  D L+GL N S F + L           EKL+++F D+D
Sbjct: 1037 VVFSDITERKRTEADLRRLANYDVLTGLPNRSLFSNRLLQSIQVAQQTGEKLALLFLDLD 1096

Query: 138  YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILA 196
             FK +ND++GH +GD ++   S++L     +   + R GG+EF      +S   E   +A
Sbjct: 1097 RFKHVNDSYGHSMGDALLVEASNRLQSCISSEHLLCRFGGDEFVILLRNASNIDEINHIA 1156

Query: 197  NDLR-KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
              L  +I+   ++    G   +I+ S GI+            I  AD A+Y AK+ GR  
Sbjct: 1157 ERLLAQIVAPFKLF---GREFYISTSIGISIWPDDAIQPEAFIKNADLAMYHAKEEGRGN 1213

Query: 255  VVCFSDIENNTC 266
               +S   N   
Sbjct: 1214 FKYYSSERNAQA 1225


>gi|89899894|ref|YP_522365.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Rhodoferax ferrireducens T118]
 gi|89344631|gb|ABD68834.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 731

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 11/190 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDY 138
           + + + E   S   I + +  D L+GL N       +    +K       L+++F D+D+
Sbjct: 278 THTDVTERKKSEALIWRQAHFDTLTGLPNRHMLRDRVAQEIKKSKRDGLQLAVLFIDLDH 337

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++ND  GH  GD+++   + ++         V R+GG+EFA     +   +A+ L   
Sbjct: 338 FKEVNDTLGHNSGDRLLVEAARRISDCVRESDTVARMGGDEFAVIL--TELLDASSLERI 395

Query: 199 LRKIIENSQ-INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
           L+KI+   + +    G    ++ S G+         I  +   ADQALYVAK +GRNR  
Sbjct: 396 LQKILRALECVFQLDGEQAFVSASIGVTMYPLDAGDIEDLFKNADQALYVAKGAGRNRFS 455

Query: 257 CFSDIENNTC 266
            F+       
Sbjct: 456 FFTPALQQAA 465


>gi|332702442|ref|ZP_08422530.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552591|gb|EGJ49635.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 1249

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 19/237 (8%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG-------YISGSILKELFISYNR 99
           N F   +   PF    +   +N  L+ +S+    +L        Y   S + E      +
Sbjct: 753 NFFRLVVAGRPFQSETWRKHKNGELIPVSVVGYPVLMEGKIKGVYSIFSDISERKAFEEQ 812

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQINDNFGHPVG 151
           ++  +  D L+GL N   F   L    E+         +++  D+D FK +ND+ GH  G
Sbjct: 813 LTHQAFHDALTGLPNRLLFHERLERALERAKRRPDYRFAVLLVDLDRFKWVNDSLGHMAG 872

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINI 210
           D+++  +S ++     +   V RLGG+EF        + +E   +   +  +IE  +  I
Sbjct: 873 DELLVGISRRMECCLRSMDTVARLGGDEFGVLLEEFRNHREIVQITKRILSVIE--EPFI 930

Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             G ++  + S G+  R  +      ++  AD A+Y AK+ G+ R   F+ + +   
Sbjct: 931 VEGTTVFTSASIGMVLRTREYMTAEDLLRDADIAMYRAKEMGKARFKVFNRLMHENA 987


>gi|330980979|gb|EGH79082.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 667

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 102/234 (43%), Gaps = 19/234 (8%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS-------LLLGYIS-GSILKELF 94
            F A ++        + G      +N  L    +TIS       LL  +++  + +  L 
Sbjct: 319 AFYAAMWHQLTAEGHWQGEISNRRKNGELYPSWLTISAVRNKDDLLTHFVAVFADISSLK 378

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147
            +  R+   +  D L+GL N   F S L +            +++F D+D FK IND+ G
Sbjct: 379 HAQARLDYQAHHDPLTGLPNRILFESRLQAALLHSEESGSLGAVLFLDLDRFKHINDSLG 438

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206
           HPVGD ++  ++ +L         V RLGG+EF     G     +A  +AN L      +
Sbjct: 439 HPVGDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQASDAQAIANKLLACF--N 496

Query: 207 QINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               +    ++I+ S G          ++T++  AD A+Y +K  GRNRV  ++
Sbjct: 497 TPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKAKGRNRVESYT 550


>gi|54294243|ref|YP_126658.1| hypothetical protein lpl1308 [Legionella pneumophila str. Lens]
 gi|53754075|emb|CAH15548.1| hypothetical protein lpl1308 [Legionella pneumophila str. Lens]
          Length = 792

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 10/174 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R++  +  D L+GL N +A    L          N  LS++F DID FK IND+ GH  G
Sbjct: 352 RLAYQANHDSLTGLPNRTALYDRLDHAINYCKRLNTSLSVLFLDIDNFKLINDSLGHDAG 411

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++   S +L         V R GG+EF    + +  ++  ++A ++ K +    I + 
Sbjct: 412 DILLYEFSRRLKGCIRHSDTVARFGGDEFVLLLMTTEPKDVILVAQNILKAVAQ-PIKLP 470

Query: 212 SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +   + +T S GI+         ST++  +D A+Y+AKK GRN    +++  N 
Sbjct: 471 T-QEVIVTTSIGISLFPKDGIDASTLLKNSDTAMYLAKKEGRNNFQFYNNSINQ 523


>gi|311693502|gb|ADP96375.1| diguanylate cyclase [marine bacterium HP15]
          Length = 363

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 109/259 (42%), Gaps = 17/259 (6%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITI 78
           L ++ P  F I  S    +      F A IFLF       +   +     ++++ + +  
Sbjct: 110 LFAYPPIIFYISES-RVGLLACCGGFAAVIFLFSPLGDFLFEPPHSTSFRITMIAV-LGF 167

Query: 79  SLLLGYISGSILKE----LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNE 127
            ++  YI     +     L          ++ D L+GL N    +  L            
Sbjct: 168 EMVTCYILDQSRRRSKLGLLKLAAEFEYAAKHDALTGLANRREALEQLDIEYQRYLRNAR 227

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
             S++  DID FK +NDN+GH VGD++I  ++  L         + R GGEE+      +
Sbjct: 228 PFSVLLMDIDLFKSVNDNYGHHVGDELIILVARTLREQCRKVDTLARWGGEEYLVLLPET 287

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
           +  EA   AN +R+      ++   GP I  TIS G+A     E I  ++ R+D+ALY A
Sbjct: 288 NTGEALASANRIREAFAVRSVSTEQGP-IQATISVGVASIRGSESIDRLLQRSDEALYRA 346

Query: 248 KKSGRNRVVCFSDIENNTC 266
           K  GRNR   +   EN   
Sbjct: 347 KSEGRNRACGY---ENEAA 362


>gi|300868717|ref|ZP_07113328.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
 gi|300333278|emb|CBN58520.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
          Length = 1089

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 12/189 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDI 136
           I+   +    ++  ++   +  D L+GL N + F   L           +   +++F D+
Sbjct: 584 INCHDITARKLAEQQLLHDAFHDGLTGLANRALFSERLDHAFAIAKRRKDYLFAVLFLDL 643

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAIL 195
           D FK +ND+ GH +GD+++  ++ +L         V RLGG+EF            A  L
Sbjct: 644 DRFKVVNDSLGHAIGDRLLIAIARRLEKSLHPGDTVARLGGDEFVILLEDIDSLSSATNL 703

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
           AN L +  E +      G  + IT+S GIA    + E  + ++  AD A+Y AK+ GR R
Sbjct: 704 ANLLHQ--ELTSPFTLDGHEVFITVSIGIALSSPECEDAANLLRDADTAMYRAKEQGRAR 761

Query: 255 VVCFSDIEN 263
              F+   +
Sbjct: 762 HEIFNTSMH 770


>gi|122879102|ref|YP_200079.6| response regulator [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 494

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 92/198 (46%), Gaps = 14/198 (7%)

Query: 71  LVIISITISLLLG--YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE- 127
           +V+ ++   LLLG        L+ +  +  ++S  + +D L+G+ N  AF   L    + 
Sbjct: 294 IVVAALGCVLLLGVGIWLDLQLRRMHRNEAQLSTEAWVDALTGIANRRAFDDRLSRALQD 353

Query: 128 ------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEF 180
                  LS++  D+D+FK  ND +GH  GD  +  ++  +            R GGEEF
Sbjct: 354 AIRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRVIAGTIAACSRRSEDVAARYGGEEF 413

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKE---PISTI 236
                 +    A  LA+ +R  +    +   S P S H+T+S G+A     E     + I
Sbjct: 414 GMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGVATFEPGEAPLSPNAI 473

Query: 237 IYRADQALYVAKKSGRNR 254
           ++ AD ALY AK+ GRNR
Sbjct: 474 VHDADSALYRAKQKGRNR 491


>gi|325981418|ref|YP_004293820.1| diguanylate cyclase with GAF sensor [Nitrosomonas sp. AL212]
 gi|325530937|gb|ADZ25658.1| diguanylate cyclase with GAF sensor [Nitrosomonas sp. AL212]
          Length = 411

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 63/209 (30%), Positives = 101/209 (48%), Gaps = 15/209 (7%)

Query: 67  ENLSLVIISITISLLLG----YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           ++L+L I S  IS+L+     Y    + K+L      + Q    D L+GL N       L
Sbjct: 200 QDLALQIAS-QISVLIEKNQLYQGVKLNKQLKAQKKSLEQRVTHDALTGLFNRPGIFDIL 258

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
               ++       ++I+  DID+FK IND +GH  GD V+  ++++L     +  ++GR 
Sbjct: 259 HKQIQRAKRGGYGIAIIMIDIDHFKAINDTYGHLTGDAVLCEIANRLTQSARSHEYIGRY 318

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           GGEEF A     ++  A   A   R  +   +I  ++   + +TIS G+A     E +  
Sbjct: 319 GGEEFLAIISPYNQDGALKAAERFRNAVACKEIK-ANETFVSVTISLGVAISAEAETLDE 377

Query: 236 --IIYRADQALYVAKKSGRNRVVCFSDIE 262
             ++ +AD+ALY AK  GRNRV     I 
Sbjct: 378 KWLLKKADEALYQAKHKGRNRVELADHIM 406


>gi|91794771|ref|YP_564422.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91716773|gb|ABE56699.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella denitrificans OS217]
          Length = 1502

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 11/188 (5%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
            + +     +   +  L+  D L+ L N + F   L     K       +++ F D+D FK
Sbjct: 1062 TDITARKKAEEDLRILANFDPLTHLPNRTLFQDRLDQAITKAHRNQNIVALFFLDLDRFK 1121

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDL 199
             IND+ GH +GD ++  ++ +L         V RLGG+EF     G ++  A  ++A  +
Sbjct: 1122 HINDSMGHHIGDLLLKAVAHRLQRAVREGDTVARLGGDEFTIILEGVTKLNAVTLVAEKI 1181

Query: 200  RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
                +  +  +    ++ I+ S GI+        +S++I  AD A+Y AK  GRN    +
Sbjct: 1182 LNAFQ--KPFLLDDKNLTISPSIGISLYPDDANDVSSLIKYADTAMYHAKSVGRNNFQFY 1239

Query: 259  SDIENNTC 266
            +D  N   
Sbjct: 1240 TDQLNQYA 1247


>gi|320105559|ref|YP_004181149.1| diguanylate cyclase [Terriglobus saanensis SP1PR4]
 gi|319924080|gb|ADV81155.1| diguanylate cyclase [Terriglobus saanensis SP1PR4]
          Length = 573

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 59/197 (29%), Positives = 88/197 (44%), Gaps = 14/197 (7%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-- 128
           LV+I   + L    I+   L+       ++   S  D L+GL N      +L     +  
Sbjct: 372 LVLIEEMVELASMTIAALNLR------AKLESQSIRDVLTGLFNRRFMEVALERELHRAT 425

Query: 129 -----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                L+++  D+D+FK  ND FGH  GD V+  +    +    T   V R GGEEF   
Sbjct: 426 RRGSSLAVLLLDVDHFKDFNDTFGHEAGDVVLREVGACFLQSVRTEDIVCRYGGEEFVII 485

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQ 242
               + + A   A  +R+ I   +I     P  HI++S G+A        +  ++  AD 
Sbjct: 486 FPEITAEMALQRAEKIREQISALRIQFKGQPLGHISLSIGLAMFPYPASSVDELLRMADH 545

Query: 243 ALYVAKKSGRNRVVCFS 259
           ALY AK+SGRNR V  S
Sbjct: 546 ALYDAKQSGRNRTVVAS 562


>gi|296536005|ref|ZP_06898148.1| sensory box/GGDEF family protein [Roseomonas cervicalis ATCC 49957]
 gi|296263671|gb|EFH10153.1| sensory box/GGDEF family protein [Roseomonas cervicalis ATCC 49957]
          Length = 720

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 12/196 (6%)

Query: 81  LLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           ++  ++ S+ + +  ++  R+  ++  D L+GL N +     L          +   +++
Sbjct: 266 VVAVLTTSLEITDRKLAERRLGHMAHHDALTGLPNRAFLRDRLRRELARGRRGDHAFALL 325

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQE 191
           F D+D FK +ND  GH VGD ++  ++ +L         V RLGG+EFA         ++
Sbjct: 326 FLDLDRFKAVNDALGHHVGDALLRTVAQRLKATARAEDLVARLGGDEFAIVQTAIQGPED 385

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
           AA LA  +   +       + G S+    S GI            ++  AD A+Y AK  
Sbjct: 386 AAALAQRIMAALAA--PVDADGHSLSAAASIGITLSPRDGADPDELLRNADLAMYRAKAE 443

Query: 251 GRNRVVCFSDIENNTC 266
           GR+    F+   +   
Sbjct: 444 GRHGWRFFAAAMDARA 459


>gi|257094145|ref|YP_003167786.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257046669|gb|ACV35857.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 447

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 91/175 (52%), Gaps = 8/175 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           +++E   +  ++ +L+  D L+G+ N   F       I     Y+  + +   D+D+FK 
Sbjct: 245 VMQENETTREQLERLATTDGLTGMFNRRHFLAVAEEEIKRAQRYSRPICVGMADLDFFKH 304

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD V+  +++          +  R GGEEFA     +  +EA  LA  LR+
Sbjct: 305 INDSHGHASGDLVLQSVAEIFARTLRHSDWGCRFGGEEFAFVFPETGLREAHRLAERLRQ 364

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               SQI ++ G  + IT+S G+A+     P+   + RAD ALY AK+ GRNRVV
Sbjct: 365 SAAASQIALADGSRVDITLSLGLAD-ASSCPLEIALQRADAALYDAKQQGRNRVV 418


>gi|229590226|ref|YP_002872345.1| putative GGDEF domain signaling protein [Pseudomonas fluorescens
           SBW25]
 gi|229362092|emb|CAY48994.1| putative GGDEF domain signalling protein [Pseudomonas fluorescens
           SBW25]
          Length = 388

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 66/266 (24%), Positives = 120/266 (45%), Gaps = 21/266 (7%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60
           ++++L    ++ +     +  +S + +M   S+   +   T+  +       +G+     
Sbjct: 133 LSQALVMLFTVGMSVSA-VSCYSAYRYMTLASLALVLLPCTLWLLFQPSSMQVGVA---- 187

Query: 61  LEYILVENLSLVIISITISLLLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
              I V   S  ++S T  L         + +++  ++   ++ ++ D L+GL+N  AF 
Sbjct: 188 ---IAVLVFSTFVVSATRKLSDALEKAFRLTRQMERAHTISTRAAQTDELTGLMNRRAFF 244

Query: 120 SSLG------SYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
                      +N + L  +  D+D+FKQIND +GH  GD+V+  +   +   F      
Sbjct: 245 EHAQVLYEQCRHNRQPLCALMMDMDHFKQINDTYGHQAGDQVLRQIGGVISASFRQADVY 304

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKE 231
           GRLGGEEFA     +S   A  +A  L K I      ++S P   ++ S G+A      +
Sbjct: 305 GRLGGEEFAVLLPNTSLDTARTIAEQLVKAISG----LASEPVHGLSASLGVASTHTQDQ 360

Query: 232 PISTIIYRADQALYVAKKSGRNRVVC 257
            +  ++  AD+ALY AK  GRN+V  
Sbjct: 361 DLHGLMNTADKALYRAKAQGRNQVAV 386


>gi|224823606|ref|ZP_03696715.1| diguanylate cyclase with PAS/PAC and GAF sensors [Lutiella
           nitroferrum 2002]
 gi|224604061|gb|EEG10235.1| diguanylate cyclase with PAS/PAC and GAF sensors [Lutiella
           nitroferrum 2002]
          Length = 737

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 63/179 (35%), Positives = 89/179 (49%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139
            SI  E      ++  L+  D L+GLLN  +F+            Y   LSI+  D+D+F
Sbjct: 549 ASIALERDRHEKQLYFLATRDGLTGLLNRRSFMEVGEAEVLRSKRYGHDLSIMMMDLDHF 608

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND  GH  GD+V+   +      F     VGRLGGEEF      ++  EA ILA  L
Sbjct: 609 KGINDQHGHATGDQVLQHFATLCGNTFRHADIVGRLGGEEFGVLLPFTTLAEAGILAERL 668

Query: 200 RKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R  ++ S + ++ G ++H T+S GI+      + I   + RAD  LY AK  GRNR+  
Sbjct: 669 RAEVDGS-VVMACGVAVHYTVSIGISSVFPDDKDIDGPLSRADTLLYQAKTLGRNRIRY 726


>gi|145297797|ref|YP_001140638.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850569|gb|ABO88890.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 626

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 11/174 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L     ++ QL+  D L+G+ N                   + L ++  DID+FKQ+ND 
Sbjct: 453 LLNRSRKLRQLAMTDELTGIHNRRQIQAKGEVLFRQARDNGKPLCVLILDIDHFKQVNDT 512

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH +GD+V+  ++  +         VGR GGEEF      +  +EA  +A  +R  +  
Sbjct: 513 LGHHMGDRVLTAVASCIGAQMRHLDRVGRHGGEEFLVLLPDTRMEEALEVAERIRHEVSR 572

Query: 206 SQI-NISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             I  +  G  +H+  S G AE     E +  +I RAD+A+Y AK++GRN+V+ 
Sbjct: 573 LHIEEMPEGHPVHV--SIGCAECSLLDESLGDLIKRADEAMYRAKQAGRNQVMW 624


>gi|115351942|ref|YP_773781.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
 gi|115281930|gb|ABI87447.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
          Length = 466

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 102/234 (43%), Gaps = 22/234 (9%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI------LK 91
           ++A  IF    FL        YG+   L    S   I      L+  +S S+      L+
Sbjct: 240 WLAHAIFAGGFFLLS------YGVVQALQTTRSFSAIYRQ-EDLMSRLSESMARTDSALQ 292

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL  +  ++  ++  D ++G  N   FI  +               ++  D+D FK IND
Sbjct: 293 ELRRTNQKLEYMAATDPMTGASNRRQFIGQVEREIVRAERDGTPFCLLALDLDNFKNIND 352

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH +GD+V+  +  Q +        + R+GGEEF A       + A + A  +R  I 
Sbjct: 353 AYGHQIGDEVLRGVVRQCLEAIRPAGALARVGGEEFMALLPEMPLEGARMTAERVRSSIA 412

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S   +     + +T+S G+A+       +  ++   D+ LY AK+ GRNRVV 
Sbjct: 413 SSPFGL-DFKRVQVTVSVGVAQYGVDGSTVDALLRAVDERLYQAKRDGRNRVVA 465


>gi|332993845|gb|AEF03900.1| GGDEF domain-containing protein [Alteromonas sp. SN2]
          Length = 369

 Score =  192 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 112/262 (42%), Gaps = 12/262 (4%)

Query: 15  HEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIF-LFYIGLTPFYGLEYILVENLSLVI 73
           +   L  F+  +  ++F+ F    +A   F A I  +F+         EY       +V 
Sbjct: 107 NTGPLWIFTVPSVTMFFTGFRRGLMALTGFAAVIIVIFFTPDNALLATEYSFEFKTRIVY 166

Query: 74  ISITISLLLGYISGSILKELFISY---NRISQLSRIDCLSGLLNHSAFISSLGSY----- 125
             IT+S L      S  +    +     +  + +R D L+ +LN       L        
Sbjct: 167 TFITVSFLSAVYEYSRQRSYNTAVYLSEQFERQARYDPLTTILNRRGGQQQLEQELSRMQ 226

Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
              +  SI   DID FK IND FGH  GD+V+  ++            + R GGEEF   
Sbjct: 227 RNKKPFSIALADIDRFKSINDTFGHDAGDEVLKKVASVFSSRLRAQDGLSRWGGEEFLFI 286

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              ++EQ+A ++   +R+ +  + I +    S  +T S G+ E      ++T +  ADQA
Sbjct: 287 FPETNEQDARMVTEQIRENLSANAIPV-DNKSHRVTSSFGVCEITPSMTLTTALNLADQA 345

Query: 244 LYVAKKSGRNRVVCFSDIENNT 265
           LY AK  GRN+V   ++ +  +
Sbjct: 346 LYQAKNDGRNKVCTATEHKRKS 367


>gi|307725816|ref|YP_003909029.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1003]
 gi|307586341|gb|ADN59738.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1003]
          Length = 667

 Score =  192 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 94/187 (50%), Gaps = 11/187 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYF 139
           SG+ + E  ++  R++QL+  D L+GL N +A    + S        E + ++F D+D F
Sbjct: 220 SGTDITEERLAQERLTQLANTDSLTGLANRNAIQDKIRSAIEEAAPGESVGVLFLDLDNF 279

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND++GH  GD++I  +S  +         + RLGG+EF   A   + QE    A  +
Sbjct: 280 KKVNDHYGHVFGDRLIRDVSAAIGACLNEGDTLARLGGDEFIVLAAKGTAQELEATAQRI 339

Query: 200 RKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +E  +   S G   ++   S GIA    H + + ++I  AD A+YVAK +G+     
Sbjct: 340 ---LERMRTPFSLGLVEVYTGCSIGIARYPEHGDNLESLIRSADTAMYVAKDAGKRTHRV 396

Query: 258 FSDIENN 264
           FS   N 
Sbjct: 397 FSPEMNR 403


>gi|307728234|ref|YP_003905458.1| diguanylate cyclase [Burkholderia sp. CCGE1003]
 gi|307582769|gb|ADN56167.1| diguanylate cyclase [Burkholderia sp. CCGE1003]
          Length = 503

 Score =  192 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 107/235 (45%), Gaps = 19/235 (8%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            + + +   +   +I++ +       G    L+  L L +I++ +      +    ++  
Sbjct: 261 MYPLILDVALSTRDIYVGWRRRAWIIG---SLIGALDLTLIALAV------LFAQQMRGR 311

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNF 146
            ++   +  L+R D L+G+ N   F  +L         +   LS++  D+D FK  ND +
Sbjct: 312 LLAEEELRVLARTDGLTGVDNRRTFEHALESECRRVQRHGGPLSLLLIDVDNFKGFNDLY 371

Query: 147 GHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           GH  GD  +  ++  +   V  +   + R GGEEFA     + +  A  LA  +R  +E 
Sbjct: 372 GHSAGDDALITVARCIARNVQRSGDTMARYGGEEFAVLLPDTDQDGARALAETIRASVEA 431

Query: 206 SQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCF 258
             ++  +     +T+S G+A    +   ++  ++  ADQALY AK +GRNRV  +
Sbjct: 432 LALSHVASSHHVLTVSIGVATMRGEALTASRRLVDAADQALYAAKDAGRNRVFTY 486


>gi|209967162|ref|YP_002300077.1| diguanylate cyclase, putative [Rhodospirillum centenum SW]
 gi|209960628|gb|ACJ01265.1| diguanylate cyclase, putative [Rhodospirillum centenum SW]
          Length = 594

 Score =  192 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 10/179 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
            + E       + Q +  D L+G+ N   F  +L         Y    S++  DID+FKQ
Sbjct: 415 DITERKRLEASLEQAALNDPLTGVWNRRRFEQALEEAAARALRYGRPFSLLLIDIDHFKQ 474

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            ND  GH +GD+ +  ++  L         + R GGEEF+     +    A  LA+DLR+
Sbjct: 475 FNDTHGHALGDRALQMVAGVLAGRSRQVDCLARWGGEEFSLLLPETDAVSAQALASDLRR 534

Query: 202 IIENSQI---NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +    I            +T+S G+ +    E I  +  R D ALY AK +GRN+V  
Sbjct: 535 AVAALSIADVGPGDVGPGGVTVSIGVGQATPGESIDALFRRVDAALYRAKAAGRNQVHL 593


>gi|254459200|ref|ZP_05072622.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Campylobacterales bacterium GD 1]
 gi|207084093|gb|EDZ61383.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Campylobacterales bacterium GD 1]
          Length = 460

 Score =  192 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 83/174 (47%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           K +  S  R+ +L+  D L+GL N S   +SL         Y     ++  DIDYFK +N
Sbjct: 290 KAIKESNERLKELAIKDYLTGLYNRSKLDNSLEYQIKRSKRYESVFGVIMMDIDYFKSVN 349

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH VGDKV+   +  L  +      VGR GGEEF      + +     LA+ +R+ I
Sbjct: 350 DKHGHQVGDKVLLEFAKVLTDISRETDIVGRWGGEEFLIIIENADKDGITNLAHKIRETI 409

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           E     +        T S G+      E I+ +I R D+ALY AK SGRN+V  
Sbjct: 410 EMHDFPVVKRK----TASLGVTIYNKDEKINELIGRVDKALYKAKNSGRNQVQY 459


>gi|188533209|ref|YP_001907006.1| hypothetical protein ETA_10630 [Erwinia tasmaniensis Et1/99]
 gi|188028251|emb|CAO96109.1| Putative exported protein [Erwinia tasmaniensis Et1/99]
          Length = 524

 Score =  192 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 87/168 (51%), Gaps = 9/168 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+   ++ D ++GLLN     + L    S  ++ +++  DID FK++ND FGH VGDKVI
Sbjct: 360 RLKSETQTDPMTGLLNRRGLYAVLDYFLSARQEFAVLALDIDRFKRVNDTFGHAVGDKVI 419

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +++QL         + R GGEEF     G+    A ++A  +R+ IE  ++       
Sbjct: 420 KTVAEQLAKTARRSDIICRNGGEEFLMILPGADRDIALMIAERVREHIEQIRLEAVG--- 476

Query: 216 IHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            H+T+S GI+     +   +     +AD ALY AK +GRN V+   D 
Sbjct: 477 -HVTVSVGISFWAPDDEADMHQTFVQADDALYQAKNAGRNCVIVAQDA 523


>gi|189424029|ref|YP_001951206.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter lovleyi SZ]
 gi|189420288|gb|ACD94686.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter lovleyi SZ]
          Length = 300

 Score =  192 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 10/180 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           +    +EL      +  LS  D L+G  N           +      +  +S++  DID+
Sbjct: 122 AKRREEELRKRNKELELLSHKDALTGAFNRRYLCHILNVELGRAARTDGMVSVLMLDIDH 181

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND FGH  GD  +  ++ +            R GGEEF      +S++EA  +A+ 
Sbjct: 182 FKEINDRFGHQAGDLALKKVTAEATACLRDYDLFFRYGGEEFVVMLPDTSKREALKVAHR 241

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256
           L + +     +  S P + IT+S G+A     +   +  ++  ADQALY AK+SGR++V 
Sbjct: 242 LCQKVRAIAFSHIS-PDLKITVSIGVAAYPDNDVCSVEELLAHADQALYQAKQSGRDQVA 300


>gi|320529393|ref|ZP_08030481.1| diguanylate cyclase domain protein [Selenomonas artemidis F0399]
 gi|320138359|gb|EFW30253.1| diguanylate cyclase domain protein [Selenomonas artemidis F0399]
          Length = 591

 Score =  192 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 12/185 (6%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVF 133
            + +      +EL  +  R+SQL+  D L+ LLN       L             L+++ 
Sbjct: 401 FMSHFVRVTEEELNSANRRLSQLASRDALTNLLNRREMERLLQEAVRDAQENRTLLTVML 460

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK +ND +GH VGDKV+  ++D +           R GG+EF     G++ + A 
Sbjct: 461 MDIDHFKGVNDTYGHDVGDKVLLTVADAISGTIRGSDAGCRWGGDEFFVILQGATLELAG 520

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGR 252
            +   +R+ +E +++        ++T+S G+A    +      +   AD+ALY AKK GR
Sbjct: 521 RVGERIRRRVEAAKMAFDG----NVTVSIGVAHFDPERDNELQLFKNADEALYRAKKEGR 576

Query: 253 NRVVC 257
           N V C
Sbjct: 577 NAVYC 581


>gi|313895972|ref|ZP_07829526.1| diguanylate cyclase (GGDEF) domain protein [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312975397|gb|EFR40858.1| diguanylate cyclase (GGDEF) domain protein [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 591

 Score =  192 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 12/185 (6%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVF 133
            + +      +EL  +  R+SQL+  D L+ LLN       L             L+++ 
Sbjct: 401 FMSHFVRVTEEELNSANRRLSQLASRDALTNLLNRREMERLLQEAVRDAQENRTLLTVML 460

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK +ND +GH VGDKV+  ++D +           R GG+EF     G++ + A 
Sbjct: 461 MDIDHFKGVNDTYGHDVGDKVLLTVADAISGTIRGSDAGCRWGGDEFFVILQGATLELAG 520

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGR 252
            +   +R+ +E +++        ++T+S G+A    +      +   AD+ALY AKK GR
Sbjct: 521 RVGERIRRRVEAAKMAFDG----NVTVSIGVAHFDPERDNELQLFKNADEALYRAKKEGR 576

Query: 253 NRVVC 257
           N V C
Sbjct: 577 NAVYC 581


>gi|257483091|ref|ZP_05637132.1| sensory box protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331011675|gb|EGH91731.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 829

 Score =  192 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + +  L  +  R+   +  D L+GL N + F S L              +++F D+D FK
Sbjct: 373 ADISSLKHAQARLDYQAHHDPLTGLPNRTLFESRLLSALLHSEESGSLGAVLFLDLDRFK 432

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND+ GHPVGD ++  ++ +L         V RLGG+EF     G     +A  +AN L
Sbjct: 433 HINDSLGHPVGDLLLKGIAHRLKETLRDVDTVARLGGDEFIVLLPGLLQPSDAQAIANKL 492

Query: 200 RKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 +    +    ++I+ S G          ++T++  AD A+Y +K  GRNRV  +
Sbjct: 493 LACF--NTPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKAKGRNRVESY 550

Query: 259 S 259
           +
Sbjct: 551 T 551


>gi|170733262|ref|YP_001765209.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3]
 gi|169816504|gb|ACA91087.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3]
          Length = 466

 Score =  192 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 22/233 (9%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI------LK 91
           ++A  IF    FL        YG+   L    S   I  +   L+  +S S+      L+
Sbjct: 240 WLAHAIFAGGFFLLS------YGVVQALQTTRSFSAI-YSQEDLMSRLSESMARTESALQ 292

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL  +  ++  ++  D ++G  N   FI+ +               ++  D+D FK IND
Sbjct: 293 ELRRTNQKLEYMAATDPMTGASNRRQFIAQVEREIVRAERDGTPFCLLALDLDNFKNIND 352

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH +GD+V+  +  Q +        + R+GGEEF A       + A + A  +R  I 
Sbjct: 353 AYGHQIGDEVLRGVVRQCLEAIRPAGALARVGGEEFMALLPEMPLEGARMTAERVRSSIS 412

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
           +S   +     + +T+S G+A+       +  ++   D+ LY AK+ GRNRVV
Sbjct: 413 SSPFGL-DFKRVQVTVSVGVAQYGVDGSTVDALLRVVDERLYQAKREGRNRVV 464


>gi|77543223|gb|ABA87033.1| hypothetical protein [Vibrio cholerae]
 gi|259156472|gb|ACV96416.1| pas/pac/ggdef-domain containing protein [Vibrio cholerae Mex1]
          Length = 423

 Score =  192 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 64/187 (34%), Positives = 98/187 (52%), Gaps = 12/187 (6%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHS---AFISSL----GSYNEKLSIV 132
           +  Y+S G  + E       + + + +D L+GL N +   A +S       S  E +S++
Sbjct: 234 ITNYVSVGKDVTERLREEQALRESATVDQLTGLFNRNHGKALLSEAYSFTLSREEPMSLI 293

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FKQIND+FGHPVGD+++A +S  L         V R GGEEF       ++  A
Sbjct: 294 LCDIDHFKQINDSFGHPVGDQILAQVSGLLRKSVRGNDRVIRWGGEEFLILLENCTDMVA 353

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           A LA  LR  I + Q          +T+S G+A    KE +  +I R D+ALY +K++GR
Sbjct: 354 AELAERLRLRIASEQFQSVG----KVTVSLGVASLFQKESLEQLISRCDEALYKSKRNGR 409

Query: 253 NRVVCFS 259
           N++   +
Sbjct: 410 NQLTLAT 416


>gi|118581126|ref|YP_902376.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pelobacter propionicus DSM
           2379]
 gi|118503836|gb|ABL00319.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pelobacter propionicus DSM
           2379]
          Length = 629

 Score =  192 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 13/195 (6%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVF 133
           +LG I+   + E   +  +++ L+  D L+GL + +     L             L+++ 
Sbjct: 39  MLGTIA--DIHERKQNEQQLAYLATHDELTGLASRALLYDRLEQSLYYARRSGRILAVLL 96

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEA 192
            D+D FK IND+ GH  GD ++  ++ +L  V        R GG+EF       +   + 
Sbjct: 97  LDLDRFKVINDSLGHEFGDNLLKAVALRLQQVIREGDTAARFGGDEFVILLAEVADPDDV 156

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSG 251
            +LA  + + +E    ++  G  + ++ S GI+      +  +T+I  AD A+Y AK+ G
Sbjct: 157 GMLAGRILRCLE--PPHLIDGKEVTVSASLGISLFPRDSDDDATLIRNADIAMYRAKREG 214

Query: 252 RNRVVCFSDIENNTC 266
                 FS   N   
Sbjct: 215 GGSFSFFSPEMNQRA 229


>gi|302186019|ref|ZP_07262692.1| GGDEF domain-containing protein [Pseudomonas syringae pv. syringae
           642]
          Length = 424

 Score =  192 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 68/285 (23%), Positives = 119/285 (41%), Gaps = 36/285 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL------FYIG 54
           + +S    L IWL  +    +     +M    + +++F+ +   +   +L          
Sbjct: 133 LEQSYPVELQIWLA-DIRWPALHGA-WMSLIQLSYAMFLVSFGVLIWQYLEKPRPLHAAQ 190

Query: 55  LTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           +    GL + L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL 
Sbjct: 191 IVGLLGLFWALPKTFILPFTLNILCSQVMLMIAAAVAHEAY-------QMAFRDELTGLP 243

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A    +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        
Sbjct: 244 GRRALNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAY 303

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------------------- 214
           R GGEEFA      S  E       +R+ I N +I + +                     
Sbjct: 304 RYGGEEFAIVFAAKSIDECMPHLEAIRETIANYEIQLRNKDNRPQDDQQGRQRRSGAQAG 363

Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S+ +T+S G+AER         ++  ADQALY AK +GRN VV +
Sbjct: 364 SVSVTVSIGVAERQPEHRTPEEVLKSADQALYAAKGAGRNCVVAY 408


>gi|254478757|ref|ZP_05092126.1| GGDEF domain protein [Carboxydibrachium pacificum DSM 12653]
 gi|214035322|gb|EEB76027.1| GGDEF domain protein [Carboxydibrachium pacificum DSM 12653]
          Length = 553

 Score =  192 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 16/216 (7%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112
           IG      +E    ++ S+ II I +      I+ +        Y  +++ S  D L+  
Sbjct: 344 IGCLLILHVETNAFDDDSVRIIEIIVDQASVAITNA------KKYYEVTRKSITDPLTKT 397

Query: 113 LNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N   F  +L          NE +S++ FD+D FKQIND +GH +GD+V+  ++ ++   
Sbjct: 398 YNRRYFNDALMENIMRADENNEPVSLIMFDLDNFKQINDTYGHLIGDEVLKEVARRIKNN 457

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
             +   V R GGEEFA      + ++A ++A  +R  + +  I    G  I+ITI+ G+A
Sbjct: 458 VRSDDIVARFGGEEFAVILPKLTAEQAYMIAERIRTEVSSKPIKTEKG-DIYITITGGVA 516

Query: 226 ERCHK-EPISTIIYRADQALYV-AKKSGRNRVVCFS 259
           +   K +    ++  AD+ALY   K  GRN++  + 
Sbjct: 517 DYPSKADSAEKLVSHADRALYAGGKSKGRNKIAIYE 552


>gi|153840412|ref|ZP_01993079.1| MorA [Vibrio parahaemolyticus AQ3810]
 gi|149745925|gb|EDM57055.1| MorA [Vibrio parahaemolyticus AQ3810]
          Length = 591

 Score =  192 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 9/186 (4%)

Query: 81  LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDI 136
           L+ YI     +        ++ +++  D L+ L N +  IS L  +    +  + +F DI
Sbjct: 150 LINYICVFEDISVRKAHEEKLQRMAFYDPLTNLPNRTHLISLLEQHIEMEQPFATLFLDI 209

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK IND+ GH  GD++++ L+ +L  +      V R+GG+EF            + L 
Sbjct: 210 DHFKHINDSMGHFCGDQLLSKLAVRLQDILHLNAHVARIGGDEFVIVLPDIDGD--SPLL 267

Query: 197 NDLRKI--IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
             L  I  +     ++++  S+ I+ S GIA      +   T++  AD A+Y+AKK+GRN
Sbjct: 268 ETLSSILGVFRRPFDLANHDSLRISTSIGIALYPNDGQDSETLLKNADTAMYLAKKNGRN 327

Query: 254 RVVCFS 259
               +S
Sbjct: 328 GYAFYS 333


>gi|296134751|ref|YP_003641993.1| diguanylate cyclase with PAS/PAC sensor [Thiomonas intermedia K12]
 gi|295794873|gb|ADG29663.1| diguanylate cyclase with PAS/PAC sensor [Thiomonas intermedia K12]
          Length = 530

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 7/172 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-----SIVFFDIDYFKQIND 144
           + +       ++++++ D L+G  N   F     +  +       S++  D D+FK++ND
Sbjct: 352 ITDRKQREQALTRMTQTDALTGFYNRRGFFERANALLQSARDQAPSLLLIDADHFKRVND 411

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD V+  L++++         +GR+GGEEFA     +S + A  LA+ +R  + 
Sbjct: 412 THGHAVGDTVLVQLANRMNAALREGDVIGRIGGEEFAVFLPTTSLENAYELADRIRLSVS 471

Query: 205 NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
              + I  G  + +T+S G+      E  +   + RAD A+Y AK++GRNRV
Sbjct: 472 RHALRI-QGLRVPMTLSIGVTVLQPGESTLEAALGRADTAMYQAKQNGRNRV 522


>gi|119470567|ref|ZP_01613270.1| putative two-component response regulator [Alteromonadales
           bacterium TW-7]
 gi|119446268|gb|EAW27545.1| putative two-component response regulator [Alteromonadales
           bacterium TW-7]
          Length = 299

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 59/193 (30%), Positives = 91/193 (47%), Gaps = 13/193 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128
            + S++   +   +L  +    + +  L+ ID L+ + N      +L     +       
Sbjct: 108 FSASIVRVRVRNQLL--IKQKNDLLEMLASIDGLTEIPNRRYLDENLSREWRRSKRGGSV 165

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD-QLVVVFGTPMFVGRLGGEEFAAAALGS 187
           LS++  DIDYFK+ ND +GH  GD+ +  ++   L        F+ R GGEEFAA     
Sbjct: 166 LSVLLMDIDYFKRYNDTYGHRAGDECLKKVAQSLLAQCKRGSDFIARYGGEEFAAILPDV 225

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPIST--IIYRADQAL 244
           S++EA   AN LR  +    I   +  +   ITIS G+A        S   ++  AD  L
Sbjct: 226 SKEEAIAFANKLRNAVNKLNIEHKTSLNAQCITISIGVATMEDGRSTSEHSLLEEADLGL 285

Query: 245 YVAKKSGRNRVVC 257
           Y AK++GRNRVV 
Sbjct: 286 YEAKEAGRNRVVA 298


>gi|152985511|ref|YP_001351597.1| GGDEF domain-containing protein [Pseudomonas aeruginosa PA7]
 gi|150960669|gb|ABR82694.1| ggdef domain protein [Pseudomonas aeruginosa PA7]
          Length = 668

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 76/164 (46%), Gaps = 8/164 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            Q +  D L+GL N +A    L            +L +   DID+FK+IND+FGH  GDK
Sbjct: 505 RQKALTDPLTGLPNRAALSERLEQEVARRRRDGGELLLAVLDIDHFKRINDDFGHLAGDK 564

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  ++ +L        F+ R GGEEF      +       L   LR  I     +   G
Sbjct: 565 VLKIIAGELRKRLRQADFIARFGGEEFVVLLPATPLDAGRQLLERLRAAIAACPFHFK-G 623

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             + IT SAGI      E       RADQALY AK++GR+R+  
Sbjct: 624 EPLSITCSAGITAFVGNEAGEAAFERADQALYRAKRAGRDRLEV 667


>gi|114563820|ref|YP_751333.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
 gi|114335113|gb|ABI72495.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
          Length = 714

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 90/190 (47%), Gaps = 15/190 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           S  +LKE+     ++   +  D L+ L N +     +          +++++I F D+D 
Sbjct: 265 SNQVLKEV---NEKLKFAANYDPLTHLPNRNLLADRMQQALIKAQRNSKQIAIAFLDLDG 321

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK++ND +GH +GD+ +  ++++          + R GG+EF        S QEA+ +  
Sbjct: 322 FKEVNDAYGHDIGDEFLCLIANRFKTAIREDDTLARFGGDEFVLILDDLDSHQEASEILQ 381

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
            +   I  ++I I     + IT+S G+            +I  ADQA+Y AK+ G+N + 
Sbjct: 382 RILSSI--TEIFIIENKRLSITVSIGVTFFPQDNSHADILIRHADQAMYRAKEQGKNCIH 439

Query: 257 CFSDIENNTC 266
            F D EN+  
Sbjct: 440 EF-DFENDVA 448


>gi|297584311|ref|YP_003700091.1| response regulator receiver modulated diguanylate cyclase [Bacillus
           selenitireducens MLS10]
 gi|297142768|gb|ADH99525.1| response regulator receiver modulated diguanylate cyclase [Bacillus
           selenitireducens MLS10]
          Length = 454

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 9/188 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
            +   +++       RI +   +D L+G  N +   + L           +  S+   DI
Sbjct: 128 LLIKELIQNRLRYKRRIDKAVLVDELTGTFNRTYMKTKLHEMIAWYKRTEDPGSVAILDI 187

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK++ND +GH  GD+V+   +D +         V R GGEEF      +  ++A  + 
Sbjct: 188 DHFKKVNDRYGHATGDQVLKTFADIMREETRESDIVCRYGGEEFVVLLPNTCPEDAETVI 247

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             +RK +E++  +   G   H+T S GI      +     ++++ADQALY AK  GRNR+
Sbjct: 248 ERVRKHVESTPHDSGEGI-FHVTFSTGITFISSGDADPEQLVHQADQALYQAKNDGRNRI 306

Query: 256 VCFSDIEN 263
             F    +
Sbjct: 307 RHFDTAMS 314


>gi|241662019|ref|YP_002980379.1| MHYT sensor-containing diguanylate cyclase/phosphodiesterase
           [Ralstonia pickettii 12D]
 gi|240864046|gb|ACS61707.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Ralstonia
           pickettii 12D]
          Length = 687

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 61/280 (21%), Positives = 114/280 (40%), Gaps = 23/280 (8%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL-FYIGLTPFYGLEY 63
           L   +++W+      +S          ++   + I  + ++      F  G         
Sbjct: 153 LASGVALWMAFRLRQQSRRVRALRAGSAVVMGVAIVGMHYVGMAAAAFPYGSVCGAAHTG 212

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISY------------NRISQLSRIDCLSG 111
              E L+LVII +T+++L   +  S+L     +               ++ L+  D L+ 
Sbjct: 213 ASAEWLALVIIIVTLAVLAIALIISVLDLRMEARTALLANSLAAANKELAYLALHDNLTK 272

Query: 112 LLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           L N       L            + +++F D+D FK +ND +GH VGD ++  ++ ++  
Sbjct: 273 LSNRVLLEDRLTQAIRTADREKRRFAVMFMDLDGFKAVNDVYGHHVGDLLLIDVAQRIGA 332

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                  V R+GG+EF   A     ++A  LA+ L +++   +  ++ G  + ++ S GI
Sbjct: 333 RVRQQDTVARVGGDEFVVLAYVDDPEDAGTLADALLEVVR--EPFMAGGHELRVSTSIGI 390

Query: 225 AERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           A           ++  AD A+Y AK  GRN    F    N
Sbjct: 391 AVYPGDGGNQHDLLTNADAAMYHAKGLGRNAYSFFEPSMN 430


>gi|228954329|ref|ZP_04116355.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229071549|ref|ZP_04204767.1| Sensory box/GGDEF family protein [Bacillus cereus F65185]
 gi|229081301|ref|ZP_04213804.1| Sensory box/GGDEF family protein [Bacillus cereus Rock4-2]
 gi|228701923|gb|EEL54406.1| Sensory box/GGDEF family protein [Bacillus cereus Rock4-2]
 gi|228711485|gb|EEL63442.1| Sensory box/GGDEF family protein [Bacillus cereus F65185]
 gi|228805261|gb|EEM51854.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 415

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          +EK++I+ FDID FK +
Sbjct: 239 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTV 298

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 299 NDTYGHDFGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 358

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q    S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 359 IETKQFTGIS----KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 410


>gi|313111572|ref|ZP_07797371.1| putative GGDEF domain-containing protein [Pseudomonas aeruginosa
           39016]
 gi|310883873|gb|EFQ42467.1| putative GGDEF domain-containing protein [Pseudomonas aeruginosa
           39016]
          Length = 671

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 78/164 (47%), Gaps = 8/164 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            Q +  D L+GL N +A    L             L +   DID+FK+IND+FGH  GDK
Sbjct: 508 RQKALTDPLTGLPNRAALSERLEQEVARRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDK 567

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  ++ +L        F+ R GGEEF      +S +    L   LR  I     +   G
Sbjct: 568 VLKIIAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHFK-G 626

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             + IT SAGI      E    +  RADQALY AK++GR+R+  
Sbjct: 627 EPLSITCSAGITAFEGNEAGEVVFERADQALYRAKRAGRDRLEV 670


>gi|307266387|ref|ZP_07547925.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|326391146|ref|ZP_08212692.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter ethanolicus
           JW 200]
 gi|306918623|gb|EFN48859.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|325992845|gb|EGD51291.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 554

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 62/233 (26%), Positives = 112/233 (48%), Gaps = 20/233 (8%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           S+ +A + F  ++    +G      +E  + +  S+ II I +      I+ +       
Sbjct: 332 SVVVAPLRFSGSV----VGCLMVLHVETNVFDEDSVKIIEIIVDQASVAITNA------K 381

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148
            Y  +++ S  D L+   N   F  +L          +E +S++ FD+D FK IND +GH
Sbjct: 382 RYYEVTKKSITDPLTKTYNRRYFNDALMENIMRADETSEPVSLIMFDLDNFKLINDTYGH 441

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+V+  ++ ++     +   V R GGEEFA      + ++A ++A  +R  + +  I
Sbjct: 442 LVGDEVLKEVAKRIKNNVRSDDIVARFGGEEFAVILPKLTAEQAYMIAERIRNEVSSRPI 501

Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYV-AKKSGRNRVVCFS 259
               G  I++TI+ G+A+   K +    +I  AD+ALY   K  GRN++  + 
Sbjct: 502 RTDKG-DIYVTITGGVADYPEKADSAEKLISHADRALYAGGKSKGRNKIAIYE 553


>gi|302879176|ref|YP_003847740.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
 gi|302581965|gb|ADL55976.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
          Length = 1134

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 78/192 (40%), Gaps = 16/192 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + +  ++   I  L+  D L+ L N    +  L              +++F D+D FK
Sbjct: 684 SDITQRKLAEEEIRNLAFYDALTRLPNRRLLLDRLHAALSVSARSRRFGAVLFLDMDRFK 743

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE------AAI 194
            +ND  GH  GD ++  +++++ +       V RLGG+EF         +        A 
Sbjct: 744 TLNDTMGHDYGDLLLIEVAERIKLCVREIDTVARLGGDEFVILVEEIDTRAEETSKHIAA 803

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRN 253
           +A  +R  +  S          H + S G+      +E    ++  AD A+Y AK SGRN
Sbjct: 804 IAEKIRSAL--SVPYRLKEKHHHSSPSIGVCLYRGIEESTDDLLKHADMAMYQAKDSGRN 861

Query: 254 RVVCFSDIENNT 265
            V  F  +    
Sbjct: 862 AVRFFDPLMQQA 873


>gi|172036947|ref|YP_001803448.1| hypothetical protein cce_2032 [Cyanothece sp. ATCC 51142]
 gi|171698401|gb|ACB51382.1| hypothetical protein cce_2032 [Cyanothece sp. ATCC 51142]
          Length = 1250

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 84/189 (44%), Gaps = 12/189 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYF 139
           S + E   +  ++   +  D L+ L N   F+  L    E+         +++F D+D F
Sbjct: 792 SDITEQKRAEEQLQYNATHDPLTNLPNRILFMDRLEHAIERQKRHPKFIFAVLFLDLDEF 851

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND+ GH +GD+++  ++ +L     +   + RLGG+EF          ++A  +A  
Sbjct: 852 KVINDSLGHAIGDQLLQEIALRLQNGLRSDDTLARLGGDEFTILLEDIEDIKDAIKIAKR 911

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           +   ++ +Q  I    +I I  S GIA      +  + I+  AD A+Y AK  G+     
Sbjct: 912 IH--LDLTQPFILEDQNIFINTSIGIALNSSGYQEAAEILRDADTAMYRAKADGKACYAI 969

Query: 258 FSDIENNTC 266
           F    +   
Sbjct: 970 FDHKMHERA 978


>gi|330966211|gb|EGH66471.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 360

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 114/227 (50%), Gaps = 12/227 (5%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
              + +    L P   L   + +  + + + +   + +G+++  +  +L+   N + +LS
Sbjct: 125 ALGVLISLTVLNPVVNLNGNMTQIYACLPVLVIYPIFIGWMNHQVTLKLWEHRNILRKLS 184

Query: 105 RIDCLSGLLNHSAFISSL---------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R D L+GLLNH A+   L          + +++  I   DID+FK IND +GH +GD V+
Sbjct: 185 RTDSLTGLLNHGAWKDLLDLEFAKSQNQNQHQECVIALIDIDHFKIINDTYGHLMGDTVL 244

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +S+ L+        +GR GG+EF     G+S  +A  +   +R  I+  ++  S    
Sbjct: 245 QNISEALIENLRDSDLIGRCGGDEFCVILPGTSLLQAREILERMRLAID--ELTYSLHRD 302

Query: 216 IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +  ++S GIA         S+ ++ AD+ALY+AK +GRNRVV   D 
Sbjct: 303 LKASLSVGIAAYSPDLPDASSWLHEADKALYLAKSTGRNRVVSAEDA 349


>gi|239907745|ref|YP_002954486.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239797611|dbj|BAH76600.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 458

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 56/191 (29%), Positives = 90/191 (47%), Gaps = 12/191 (6%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYN 126
           I+   +L++  +    L+ +   Y  + + SR D L+GL N +               YN
Sbjct: 272 IAAGFALIVAIVVAWNLR-INKLYAELERRSRTDPLTGLANRTHLDAVLRQEADRAERYN 330

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
              +++ FD+D FK +ND  GH VGDKV+  L++           VGR GGEEF      
Sbjct: 331 RPFAVILFDVDLFKAVNDAHGHLVGDKVLKTLAEAAQATVRASDMVGRWGGEEFLVLCPE 390

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
           +    A +LA  LR  +   +    +      T+S G+A     + + +++ RAD ALY 
Sbjct: 391 TDAASALVLAERLRLAVRGERFETGTVQ----TVSLGVAAFAPGDCVDSLLIRADDALYK 446

Query: 247 AKKSGRNRVVC 257
           AK +GR+R + 
Sbjct: 447 AKNAGRDRAMA 457


>gi|88706729|ref|ZP_01104431.1| sensory box/GGDEF/EAL family protein [Congregibacter litoralis
           KT71]
 gi|88699050|gb|EAQ96167.1| sensory box/GGDEF/EAL family protein [Congregibacter litoralis
           KT71]
          Length = 793

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 11/182 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFK 140
           + + +L  +  ++ +L+  D L+ L N           I      ++ L++ F DID FK
Sbjct: 347 TDISQLKETEEQLQKLAHYDPLTNLPNRFLVNECLEHSIRRAQRRSDHLAVFFLDIDSFK 406

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
            IND+ GH  GDK++   +++L  +      VGR+GG+EF       S   +A  +A  +
Sbjct: 407 NINDSLGHFAGDKLLKTTANRLKALLRDDDSVGRIGGDEFLMVLDDISTPDDATHIAEKI 466

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +    I    G SI ++ S GI+      +   T++  AD A+Y AK  GR+    +
Sbjct: 467 IGALRKPMI--LEGRSISVSASIGISIYPEDGQTAETLMSNADAAMYNAKDQGRDTFRFY 524

Query: 259 SD 260
           S+
Sbjct: 525 SE 526


>gi|308272277|emb|CBX28883.1| hypothetical protein N47_B20290 [uncultured Desulfobacterium sp.]
          Length = 524

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 60/179 (33%), Positives = 90/179 (50%), Gaps = 11/179 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           + S+ K+L  +  ++  +S  D L+GL NH  F   L         Y + LS++  D+DY
Sbjct: 328 ADSVAKKLRAANEKLKAVSIRDGLTGLYNHVYFQKQLDIELSRTIRYRKPLSLIMLDLDY 387

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND +GH  GD V+  +S   +          R GGE+F      +  +EAA+LA  
Sbjct: 388 FKVINDTYGHRTGDIVLQKISALFMNQVRISDITARYGGEKFVIILPETELKEAAVLAER 447

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNR 254
           +R  +E + I   S   I +TIS G+A       I   S ++  AD ALY +K +GRN+
Sbjct: 448 IRTSVEQNVIRTGSTA-IRVTISIGVATYLPSGNILSKSELLDAADSALYASKHNGRNK 505


>gi|300113761|ref|YP_003760336.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Nitrosococcus watsonii C-113]
 gi|299539698|gb|ADJ28015.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosococcus watsonii C-113]
          Length = 817

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 12/216 (5%)

Query: 60  GLEYILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           G EY + +  S   IS     +LG +   S + +      +I+  +  D L+GL+N   F
Sbjct: 348 GQEYAIQD--SAAPISSRKGEILGMVLVFSDITKTRRREQQITHQATHDALTGLINRWEF 405

Query: 119 ISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L          + + ++ +FD+D FK IND  GH  GD+++  +S+ L         
Sbjct: 406 EHRLERVLATLKAESTEYALCYFDLDRFKIINDTCGHTAGDELLRQVSEVLEGQIRKRDT 465

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + RLGG+EF       S Q+A  +A  + K IE+ Q     G S  I +S G+       
Sbjct: 466 LARLGGDEFGVLLEHCSLQQAQRVATAIHKAIEDFQFTW-EGKSFRIGVSIGLVPITKAS 524

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             I+ ++  AD A Y AK  GRN +  + + +    
Sbjct: 525 MGIAAVLKAADTACYAAKNKGRNCIHVYRETDKELA 560


>gi|149374686|ref|ZP_01892460.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter algicola DG893]
 gi|149361389|gb|EDM49839.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter algicola DG893]
          Length = 724

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 84/193 (43%), Gaps = 12/193 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
           Y +   + E   +   I+  +  D L+ L N + F   L           +KL+++F D+
Sbjct: 272 YGTARDVTERKEAEAFINFQAYHDLLTRLPNRALFKDRLDLAITHARRSEQKLAVMFLDL 331

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAIL 195
           D FK IND  GH +GD+++  ++ +L         + R GG+EF          ++A  +
Sbjct: 332 DRFKVINDTLGHAMGDRLLQAVTQRLERCLRKGDTLSRFGGDEFTLLLPSIHGYEDARQI 391

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
           +  L K +            + + +S GIA      E +  +I  AD A+Y  K  G++ 
Sbjct: 392 SKKLIKALRA--PFQLGDHEVFVGVSIGIATYPEAGESMDQLIQNADIAMYHVKARGKDG 449

Query: 255 VVCFSDIEN-NTC 266
              +S+  + +T 
Sbjct: 450 YRFYSESMSIDTA 462


>gi|83646563|ref|YP_434998.1| FOG EAL domain-containing protein [Hahella chejuensis KCTC 2396]
 gi|83634606|gb|ABC30573.1| FOG: EAL domain [Hahella chejuensis KCTC 2396]
          Length = 1092

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 11/186 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E      ++   ++ D L+GL N +     +          N+  ++  FD+D FK 
Sbjct: 497 DVTESIQYQAQLEYKTKYDNLTGLPNRNLLNDRIQQAIAYAARRNKGFALAVFDLDNFKY 556

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLR 200
           IND+ GH  GD+++  +++ L         + RLGG+EF         ++   ++ N ++
Sbjct: 557 INDSMGHETGDQLLTEVAESLRSCLREGDTLARLGGDEFVILMHKEECDRPLGLMLNRIQ 616

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +++  SQ        I +T S G+ +     E  ST++  AD A+Y AK+ GRNR+  ++
Sbjct: 617 QLV--SQPRRLKDKEILVTPSIGVCQFPEDGEDASTLLKNADTAMYKAKERGRNRICSYT 674

Query: 260 DIENNT 265
              N +
Sbjct: 675 QEMNES 680


>gi|56477067|ref|YP_158656.1| putative sensory box/GGDEF family protein [Aromatoleum aromaticum
           EbN1]
 gi|56313110|emb|CAI07755.1| putative sensory box/GGDEF family protein [Aromatoleum aromaticum
           EbN1]
          Length = 698

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 9/185 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQIN 143
            +     +  R+   +  D L+GL N +     +      S     +++F D+D FK +N
Sbjct: 256 DVTARTHAEKRLIHQASHDALTGLPNRNLLNDRITHAIARSRGRLTAVMFLDLDRFKLVN 315

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKI 202
           D++GH VGD +I  +++++         V RLGG+EF       +S ++AA LA  LR  
Sbjct: 316 DSYGHAVGDALIREVANRVSACLRAGDTVARLGGDEFVVLLEDLASIEDAARLAAKLRDR 375

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +  S         + ++ S G+A           ++  AD A+Y AK+ GRN    +   
Sbjct: 376 LSES--VRIGSLELPLSASIGVALAPRDGRDPEMLLKNADIAMYRAKERGRNNYCFYGPE 433

Query: 262 ENNTC 266
            ++  
Sbjct: 434 MDHHA 438


>gi|317491852|ref|ZP_07950287.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920286|gb|EFV41610.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 352

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 112/227 (49%), Gaps = 7/227 (3%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           F  ++ T+I I       + + PF   +  +++ L    +S  + LL+ Y + SI +   
Sbjct: 128 FRTYLKTIILI--TLYRIVVVLPFLHTQGNVIDILVYQAVSF-LCLLVCYQTLSIKRRSV 184

Query: 95  ISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            ++ ++   S  D ++ + N  +    + +L        +V  DID FK +ND +GH  G
Sbjct: 185 DAFFKVRAESLRDAMTKVHNRQSLELQLQALSKSRTPCCLVMIDIDNFKLVNDTYGHLAG 244

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  +++ + ++  +  F+ R GGEEFA          A  +   +R  I N +  +S
Sbjct: 245 DQVLVEVAELMNLITRSSDFIARFGGEEFAIIIHHDDLNRAFQICERIRLSISNRKFFLS 304

Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            GP IH+T S GI+    K   +   + RAD ALY AK +G+N+VV 
Sbjct: 305 HGPKIHVTASFGISLYDGKTSTVEETLNRADNALYQAKHTGKNKVVL 351


>gi|28867570|ref|NP_790189.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28850805|gb|AAO53884.1| GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 677

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 85/184 (46%), Gaps = 11/184 (5%)

Query: 82  LGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           L     S+ +E            Q + ID L+GL N +++   L             L +
Sbjct: 492 LASRVASMEQEALGFRTHLEEQRQKALIDPLTGLPNRASWGERLEQEMADWQRDKNSLLV 551

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK+IND +GH  GDKV+  +++          F+ R GGEEF      +    
Sbjct: 552 CILDLDHFKRINDGYGHLAGDKVLKIVANVFKKRLRPADFLARFGGEEFVMLLPATLLGA 611

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              L ++LR  +E    +   G  + IT+S G+      E   T I RADQALY AK++G
Sbjct: 612 GLTLLDELRTAVELCPFHFK-GERVTITVSIGVTALRTGERSDTAIKRADQALYKAKENG 670

Query: 252 RNRV 255
           RNRV
Sbjct: 671 RNRV 674


>gi|307822295|ref|ZP_07652527.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307736861|gb|EFO07706.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 874

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 92/209 (44%), Gaps = 14/209 (6%)

Query: 69  LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISS------ 121
           LS+  ++  +  L  Y++  + + +   +   + QL+  D L+ L N S F +       
Sbjct: 408 LSINAVADKLGQLTHYVAISTDISQQKQTERELKQLAYYDVLTSLPNRSLFKNRFEHEIC 467

Query: 122 -LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                N +L++ F D+D+FK +ND  GH  GD ++   S ++         V R+GG+EF
Sbjct: 468 LAERNNTRLALFFLDLDHFKNVNDTLGHWAGDCLLQITSTRIQSCLRKTDTVARMGGDEF 527

Query: 181 AAAALG-SSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHK-EPISTII 237
                G +   +A  LA   RK+I+     +     ++ + +S GIA          T+ 
Sbjct: 528 TIILPGLTGITDATELA---RKLIDAMTKPVQIKDHTVFVGVSIGIAIFPDDGNDFYTLT 584

Query: 238 YRADQALYVAKKSGRNRVVCFSDIENNTC 266
             AD A+Y AK  GR     + +  N   
Sbjct: 585 KHADTAMYAAKAKGRGLFQYYEEGMNEAA 613


>gi|285019288|ref|YP_003376999.1| sensor protein [Xanthomonas albilineans GPE PC73]
 gi|283474506|emb|CBA17007.1| putative sensor protein [Xanthomonas albilineans]
          Length = 569

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 8/179 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNF 146
                 +   S  D L+GL N      SL          +  LS++  D+D+FKQ ND  
Sbjct: 389 LRLRESLRLQSIRDPLTGLFNRRYLEESLQHELARCERRSMPLSLLMLDVDHFKQFNDVH 448

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD ++A +   L           R GGEEF      +  +EA ++A  +R      
Sbjct: 449 GHGGGDSLLAAVGQMLSSRLRGEDIACRYGGEEFTVILPETGPEEALVIAEHIRAAAPQL 508

Query: 207 QINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             N+       +T+S G+A       ++ T++ +AD ALY AK+SGRN+V  +  I ++
Sbjct: 509 NANLDGKALPGVTLSIGLASYSRDGTVATTLLRKADAALYRAKRSGRNQVQQYDSILDD 567


>gi|152999858|ref|YP_001365539.1| PAS/PAC and GAF sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|151364476|gb|ABS07476.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS185]
          Length = 1015

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + +   + + I + +  D L+GL N    +  L              +++F D+D+FK
Sbjct: 566 SDITDKKQNEHLIWKQANYDTLTGLPNRRMLLEYLSSEVKNADRNRNHFALLFLDLDFFK 625

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDL 199
           ++ND  GH +GD ++   + +L         V RLGG+EF        + +    +A ++
Sbjct: 626 EVNDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMDDHKGIERVAENI 685

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
            + I   +  +    + +I+ S GI         I  ++  ADQA+Y AK  GRNR   F
Sbjct: 686 LRRIA--EPYVLGEETAYISASIGITLYPDDSTSIEGLLKHADQAMYAAKDQGRNRFNYF 743

Query: 259 SDIENNTC 266
           +       
Sbjct: 744 TPSMQEYA 751


>gi|110833577|ref|YP_692436.1| GGDEF domain-containing protein [Alcanivorax borkumensis SK2]
 gi|110646688|emb|CAL16164.1| GGDEF domain protein [Alcanivorax borkumensis SK2]
          Length = 367

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 65/273 (23%), Positives = 122/273 (44%), Gaps = 27/273 (9%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSI-------------FIATVIFIANIFLFYIG 54
           F+ +++     ++ F      ++FS    +             F+A+  +   ++L  + 
Sbjct: 92  FIGVFMVSGYYVDEFRLSVVTLFFSALLLVSFRLSGKVMVAVAFMASAAYALMLWLALLD 151

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISG------SILKELFISYNRISQLSRIDC 108
                 L   L++ L   +IS++ ++  G I+          ++L  +  ++ +++  D 
Sbjct: 152 RWVHLSLSVELLQWLVFAMISVSFAVTGGSINRLRDALVDKNRDLANAVKKVREMAIRDD 211

Query: 109 LSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GL N    +  L              ++ + D+D+FK+IND  GH  GD+V+   S+ 
Sbjct: 212 LTGLFNRRHLLEILERQRALFSSKSVPFAVCYVDLDHFKKINDRHGHDWGDRVLRQFSEL 271

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
            +         GRLGGEEF      S  Q A ++A  LR      + +   GP+I +++S
Sbjct: 272 ALSGMRDGDHFGRLGGEEFLLVLPQSDAQGALLVAERLRLRWREQRFDAQGGPAI-VSLS 330

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            G+A     E +  ++ RADQ LY AK  GR++
Sbjct: 331 VGVAAYQEGERVDELLNRADQGLYRAKAGGRDQ 363


>gi|71735567|ref|YP_273675.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71556120|gb|AAZ35331.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 763

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 69/271 (25%), Positives = 117/271 (43%), Gaps = 41/271 (15%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE-------------NLSLVIISI 76
           Y  +F  +F   V  +    L  + L     L  ++ E              L L I +I
Sbjct: 185 YNGMFHQMFRYGVSLLLGAGLLTMHLMGMRALRLVMPEGAALHIPGTENSQQLGLTIAAI 244

Query: 77  TISLLLGYISGS------------------ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           T+ ++ G IS +                  +L +L  +   + Q++  D L+ L+N   F
Sbjct: 245 TLLIIAGSISAAMADKKLQGKEHDLQRVNALLSQLDQARVSLQQVAHYDPLTNLINRRGF 304

Query: 119 I----SSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  L  +   N  L+++F DID+FK+IND+ GH  GD+++  +++++         
Sbjct: 305 NQIFAEKLQEHTYNNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDV 364

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           V R GG+EF         +EA  LA  + + ++ +     +G  + +T S GIA      
Sbjct: 365 VSRFGGDEFCILLSIPDYEEARHLAYRVMQKMKETI--ALAGRRMVMTTSIGIAMFPRDG 422

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                ++  AD ALY +K +GRNRV  FS  
Sbjct: 423 STCDELLKHADLALYQSKGNGRNRVNFFSPA 453


>gi|27381607|ref|NP_773136.1| hypothetical protein bll6496 [Bradyrhizobium japonicum USDA 110]
 gi|27354775|dbj|BAC51761.1| bll6496 [Bradyrhizobium japonicum USDA 110]
          Length = 1137

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 8/189 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           +   + +   +  RI+ L++ D L+GL N + F   L         +    S++  D+D 
Sbjct: 691 THEDITDRARNEKRIAYLAQHDLLTGLANRAVFSEKLDDAAKRSQRHGTTFSVLMLDLDR 750

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND  GH  GD+++  ++ +L         + RLGG+EFA        Q    +A  
Sbjct: 751 FKAVNDTLGHAAGDQLLVEVARRLSSSLRDTDVLARLGGDEFAIIQENEKNQSEGAIALA 810

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           LR I    Q     G  + +  S GIA    H     T++ +AD ALY  K +GRN    
Sbjct: 811 LRIIGLIEQPVDLDGHRVSVGTSVGIAFAPEHGADAETLLQKADVALYATKSAGRNDFRI 870

Query: 258 FSDIENNTC 266
           F        
Sbjct: 871 FQPEMTEAA 879


>gi|90423626|ref|YP_531996.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
 gi|90105640|gb|ABD87677.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
          Length = 635

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 89/180 (49%), Gaps = 4/180 (2%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDN 145
           +  EL     R+++L+  D L+ L N  +    L    +  ++LS++  D+D+FK+ ND 
Sbjct: 442 MEDELKALNFRLAELATTDGLTELANRRSMDDFLRLHFAAQDQLSLLLIDVDHFKRFNDR 501

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GD  +  ++  L      P    R GGEEFA    G +E  A  +A  +R  I  
Sbjct: 502 FGHQAGDACLTRIAKVLAEAAPAPGLAARYGGEEFAIILPGVAEPHAIRIAEAVRLTIAA 561

Query: 206 SQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             I   +G +  +T+S GIA +         ++  AD A+Y AK+ GRNR V  S + ++
Sbjct: 562 LAIAHPNGAATTVTVSIGIASKTKATASEEDLVRAADLAMYAAKRGGRNRSVASSSLPDD 621


>gi|319943588|ref|ZP_08017870.1| diguanylate cyclase/phosphodiesterase [Lautropia mirabilis ATCC
           51599]
 gi|319743403|gb|EFV95808.1| diguanylate cyclase/phosphodiesterase [Lautropia mirabilis ATCC
           51599]
          Length = 541

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 110/243 (45%), Gaps = 27/243 (11%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL-----KELFISY 97
           ++++ +  F     P + L  ++  ++ LVI++  ++LLL +  G         +L  + 
Sbjct: 20  LWVSPVLEF----LPDFHLSGVVATSVLLVILASHVALLLFFRRGRKALTKANMQLESAN 75

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE---------------KLSIVFFDIDYFKQI 142
             + + + ID L+GL N   F   L    +               K++++F D+D FK I
Sbjct: 76  EELRRRAFIDPLTGLPNRMLFEDRLLHAMQRYDRDDDSRARREPRKVAVLFVDLDGFKPI 135

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRK 201
           ND  GH VGD+V+   + +L         V R+GG+EF   A   S+  + A LAN + +
Sbjct: 136 NDMLGHAVGDEVLKEAARRLRTTTRDSDTVARIGGDEFVLLAEDVSDVADCASLANRVIQ 195

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           ++   Q     G  + ++ S G+A          ++  AD A+Y AK++G N    F   
Sbjct: 196 VLA--QPLEVQGHQVTLSGSVGVALYPEHGDRLKLVQNADAAMYTAKRAGGNTYALFESR 253

Query: 262 ENN 264
            N 
Sbjct: 254 MNE 256


>gi|304310423|ref|YP_003810021.1| GGDEF precursor [gamma proteobacterium HdN1]
 gi|301796156|emb|CBL44362.1| GGDEF precursor [gamma proteobacterium HdN1]
          Length = 664

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 11/178 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL I+  ++ + S  D L+G+ N       L             LS++  DID+FKQ ND
Sbjct: 472 ELEIANKQLEEQSYTDGLTGIRNRRYLDQFLAREFASARREKLPLSLLLIDIDHFKQFND 531

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH VGD  +  +   +   V      V R GGEEF      + +  A  +A  +R+ +
Sbjct: 532 KYGHLVGDDCLRIVGTTINSTVRRETDIVARYGGEEFCVLLPSTDQAGAVQVAETIRRRV 591

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +  + +  ++ IT+S G+A R  +    I   I  ADQALY +K +GRNRV   S
Sbjct: 592 HDIEFCV-NNQNVTITVSLGVATRTPERHHDIEHFIAAADQALYSSKHNGRNRVTIES 648


>gi|289627703|ref|ZP_06460657.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289649022|ref|ZP_06480365.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330868476|gb|EGH03185.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 829

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           + +  L  +  R+   +  D L+GL N + F S L S            +++F D+D FK
Sbjct: 373 ADISSLKHAQARLDYQAHHDPLTGLPNRTLFESRLQSALLHSEESGSLGAVLFLDLDRFK 432

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND+ GHPVGD ++  ++ +L         V RLGG+EF     G     +A  +AN L
Sbjct: 433 HINDSLGHPVGDLLLKGIAHRLKETLRDVDTVARLGGDEFIVLLPGLLQPSDAQAIANKL 492

Query: 200 RKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 +    +    + I+ S G          ++T++  AD A+Y +K  GRNRV  +
Sbjct: 493 LACF--NTPFEAGEHELFISPSIGSCVFPTDGTDVATLVKNADAAMYRSKAKGRNRVESY 550

Query: 259 S 259
           +
Sbjct: 551 T 551


>gi|262371886|ref|ZP_06065165.1| diguanylate cyclase (GGDEF) domain-containing protein
           [Acinetobacter junii SH205]
 gi|262311911|gb|EEY92996.1| diguanylate cyclase (GGDEF) domain-containing protein
           [Acinetobacter junii SH205]
          Length = 301

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           +EL  +   + +L+R D L+ L N  A    L          +   +++  D+D+FK++N
Sbjct: 130 QELEQANIELEKLARYDALTELYNRHALTDYLDYLYAQFARSHLAYAVLLMDVDFFKKVN 189

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGD V+  ++ QL        FV R GGEEF      +S + A  LA +LR+ +
Sbjct: 190 DQYGHEVGDFVLKSVAQQLSSTVRESDFVARYGGEEFVVLLPATSLEGAVALAENLRQAV 249

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
           EN+ I         I+IS G++     +      + RADQ LY AK  GRNRV+
Sbjct: 250 ENAPILDHH----PISISIGVSVVQAGDSDAQAAMRRADQYLYQAKAQGRNRVI 299


>gi|322420086|ref|YP_004199309.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M18]
 gi|320126473|gb|ADW14033.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M18]
          Length = 319

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 9/176 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           +EL  +   + +++  D L+ L NH  F  +L         Y+++  +VFFD+D FKQ N
Sbjct: 138 EELQEANRALKEMAIRDGLTSLYNHRYFQEALAREVVRSKRYDKRCCLVFFDVDNFKQYN 197

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GHP GD+++  L+  +++         R GGEEF      + ++ A  +A D+R  +
Sbjct: 198 DTHGHPEGDRLLKGLARIIMLRSRGCDLAARYGGEEFVLLLPETGKEAALTVAEDMRVRV 257

Query: 204 ENSQINISSGPSIH-ITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
                       +  +T+S G+A         +T++  ADQ LY AK SG+NRV  
Sbjct: 258 AEHPFAGRETQPLGTVTVSIGVACFPEDGSDAATLLCCADQLLYQAKNSGKNRVAA 313


>gi|313681775|ref|YP_004059513.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM
           16994]
 gi|313154635|gb|ADR33313.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM
           16994]
          Length = 602

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 63/165 (38%), Positives = 84/165 (50%), Gaps = 11/165 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           ++ L+ +D L+ + N   F   LG        Y   LS++  DID+FK INDNFGH VGD
Sbjct: 442 LNNLATVDMLTQVTNRFEFDKMLGHSISVSKRYGRTLSVLLVDIDHFKLINDNFGHLVGD 501

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+   S  L         V R GGEEF      ++   A I+A  LR+ IE +      
Sbjct: 502 EVLKSFSSLLRQQIRQSDIVARWGGEEFIILLPDTALSSAIIMAEALRQRIEVNPFEAVG 561

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               +IT S G+AE    E    ++ RAD+ LY AK SGRNRVV 
Sbjct: 562 ----NITCSIGVAEFNSVEEADDLLQRADENLYRAKHSGRNRVVA 602


>gi|284051603|ref|ZP_06381813.1| GGDEF domain protein [Arthrospira platensis str. Paraca]
 gi|291566315|dbj|BAI88587.1| putative diguanylate cyclase [Arthrospira platensis NIES-39]
          Length = 396

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 72/244 (29%), Positives = 110/244 (45%), Gaps = 15/244 (6%)

Query: 27  FMIYFSI-FFSIFIATVIFIANIFLFYIG---LTPFYGLEYILVENLSLVIISITISLLL 82
            M++  +  F + IA  + + N +L       ++ F+ +  +L   +  V        +L
Sbjct: 154 IMLWLDLMLFIVLIARTLILLNFWLSPSTDDTISNFHMMGLLLFMTIPCVNAQTLCFPVL 213

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFD 135
            ++     +EL ++  ++ QLS ID L+GLLN     S L             LSI+  D
Sbjct: 214 DFMET--YRELLVANKKLEQLSTIDELTGLLNRRFLNSRLEQEIAYHQQMGFPLSIMLID 271

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK+IND FGH  GD V+  ++     +        R GGEEF      S   +A  +
Sbjct: 272 IDHFKKINDQFGHLAGDYVLQKVAKLTNQLLRVNDLAFRYGGEEFMVLLPRSEILQALDM 331

Query: 196 ANDLRKIIENSQINISSGPS-IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           A  LR  I     N    PS   IT S G++E       +  ++ +AD ALY AK  GRN
Sbjct: 332 AERLRVSISQLYFNHPDIPSDFQITASFGLSELTKDLRCLDDLLKQADLALYQAKSQGRN 391

Query: 254 RVVC 257
           +V  
Sbjct: 392 QVCM 395


>gi|89093373|ref|ZP_01166322.1| PAS:GGDEF protein [Oceanospirillum sp. MED92]
 gi|89082352|gb|EAR61575.1| PAS:GGDEF protein [Oceanospirillum sp. MED92]
          Length = 932

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 85/179 (47%), Gaps = 11/179 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + E  ++  R+  ++  D L+GL N       L        S+  +L+++F D+D FK +
Sbjct: 490 INERKMAEERVKHMALHDALTGLPNRLLLEERLENALSDAKSHQWQLAVLFIDLDRFKLV 549

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRK 201
           ND  GH  GD+++  ++++L  V G    V RLGG+EF       +   E   +  D+++
Sbjct: 550 NDTLGHHEGDQLLVEVANRLHQVIGANDTVARLGGDEFVIVLNEIAGSTEINGVIEDIQQ 609

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +       +   + +T S G+A      E    ++  AD A+Y AK SGRN    F+
Sbjct: 610 NFK--PAVKLALQDMFVTPSIGVAIYPEDGETPVQLMKNADAAMYHAKASGRNCAQYFN 666


>gi|224371003|ref|YP_002605167.1| GGDEF domain family protein [Desulfobacterium autotrophicum HRM2]
 gi|223693720|gb|ACN17003.1| GGDEF domain family protein [Desulfobacterium autotrophicum HRM2]
          Length = 430

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 87/179 (48%), Gaps = 11/179 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           +    L+ L      + + +  D L+G+ N   F       I     Y   LS++ FDID
Sbjct: 253 VQKKNLQSLEGINELLEKQASTDALTGIFNRMKFNQTLTSEIKRAKRYRVALSLILFDID 312

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FKQ+ND++GH  GD V+  L+  +           R GGEEF   A  +S + A  LA 
Sbjct: 313 HFKQVNDSYGHLSGDTVLKHLARLVASNLREIDIFARWGGEEFVIQAPETSLESAIKLAE 372

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            LR  IEN            IT+S G+A     +   T++ RAD+ALY AK+ GRN+VV
Sbjct: 373 KLRSKIENYVFPAPK----KITVSFGVATFRSSDNDITLVNRADEALYRAKEGGRNQVV 427


>gi|171059694|ref|YP_001792043.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Leptothrix cholodnii SP-6]
 gi|170777139|gb|ACB35278.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptothrix cholodnii SP-6]
          Length = 1147

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 10/184 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + +  L  S  R+  L+  D L+ L N   F + L            +L+++  D+D FK
Sbjct: 700 TDITHLKESEARLEFLAHHDPLTHLPNRLLFNNRLDQALHQAEREGRRLAVLLLDLDRFK 759

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND++GH  GD+++ +++ +L         + RLGG+EFA        + +AA LA++L
Sbjct: 760 DINDSYGHLAGDELLKYVAQRLTQRLRQSDTLARLGGDEFALLMHDLRHDDDAARLASEL 819

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +       S G  + + +S GI     H     T++  AD ALY AK  GR     +
Sbjct: 820 LSGLSE-PWRSSEGVEVSVGVSIGICIYPDHGRTPQTLLQGADAALYRAKGDGRGVYRYY 878

Query: 259 SDIE 262
           +D  
Sbjct: 879 ADEM 882


>gi|149910458|ref|ZP_01899099.1| sensory box protein [Moritella sp. PE36]
 gi|149806517|gb|EDM66488.1| sensory box protein [Moritella sp. PE36]
          Length = 627

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 16/186 (8%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEKL-SIVFFDIDYFKQINDNFG 147
            S     +L+  D L+GL N             L   N+ + +++F D+D+FK IND+ G
Sbjct: 186 QSQEEFHRLAFFDSLTGLANRRLLNQTIETQYQLAKTNQVVGALLFIDLDFFKAINDSLG 245

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS------EQEAAILANDLRK 201
           H VGD ++  ++++L  +     F+ RLGG+EF       S      EQ A +LA  L +
Sbjct: 246 HAVGDGILVEVAERLKEIPRPEDFIARLGGDEFVILLPDLSENPMHAEQHANLLAEQLIE 305

Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            I  SQ  +  G +++I  S G+       +    ++ +AD A+Y AK +GR +V  F  
Sbjct: 306 RI--SQPYLYKGQALYIGASIGVTLFPSKDQHADDLLKQADTAMYQAKSNGRKKVYFFDV 363

Query: 261 IENNTC 266
                 
Sbjct: 364 KMQRKA 369


>gi|187920623|ref|YP_001889655.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
 gi|187719061|gb|ACD20284.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
          Length = 604

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 73/273 (26%), Positives = 120/273 (43%), Gaps = 27/273 (9%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLT-PFYGLEYI---LVEN 68
           L   K L+       ++   I   + I +V+ +    LF   LT P + L Y    L   
Sbjct: 305 LGLAKPLDDVLSGANLLGDRIVRMVLIFSVLALFLAVLFARALTKPLHSLAYAATHLFAE 364

Query: 69  LSLVIISITISLLLGYISG---SILKE-------LFISYNRISQLSRIDCLSGLLNHSAF 118
            ++  + +  +  +G ++     + +E       L      +  L+  D L+GL N   F
Sbjct: 365 HAMETLPLKRTDEIGVLARCFDRLRREIKAQMDALHAKQRELVHLATHDVLTGLPNRVLF 424

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           +  L           E L+++F D+D FKQIND FGH VGDKV+  ++ +L  V  +   
Sbjct: 425 MEKLENSIDEATRREEGLAVLFVDLDRFKQINDQFGHAVGDKVLVAVARRLKQVLCSADV 484

Query: 172 VGRLGGEEFAAAALGSSEQEAA-ILANDLRKII-ENSQINISSGPSIHITISAGIAERCH 229
           V RLGG+EF     G    EAA  +A+ +   + E  Q+    G  + +  S GI++   
Sbjct: 485 VARLGGDEFIVLIEGPRSAEAAPAIASRIMAALNEELQV---DGQGMTVGASIGISQFPD 541

Query: 230 KE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                  ++  AD A+Y AK  GR   + + D+
Sbjct: 542 DSGTAEELLLNADAAMYAAKSGGRCAYMRYHDV 574


>gi|167645462|ref|YP_001683125.1| response regulator PleD [Caulobacter sp. K31]
 gi|167347892|gb|ABZ70627.1| response regulator receiver modulated diguanylate cyclase
           [Caulobacter sp. K31]
          Length = 454

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 9/173 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L  + ++  +L+  D L+GL N       L S         + ++ +  DID+FK+IND 
Sbjct: 278 LRQNLDQSLELAVTDQLTGLHNRRYMAGQLDSLVKRAALGGDPVAALLIDIDHFKKINDG 337

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH VGD+V+   + +L           R GGEEF      +   +A  +A  +R  +  
Sbjct: 338 FGHDVGDEVLREFALRLASNVRAIDLPCRYGGEEFTVIMPDTQLADALRIAERIRMHVSG 397

Query: 206 SQINISSGPS-IHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S   ++ G   + +TIS G+ A     +   T++ RAD+A+Y AKKSGRN VV
Sbjct: 398 SPFRVAQGSELLTVTISIGVSATSGPGDTPETLLKRADEAVYEAKKSGRNAVV 450


>gi|291454315|ref|ZP_06593705.1| integral membrane phosphodiesterase [Streptomyces albus J1074]
 gi|291357264|gb|EFE84166.1| integral membrane phosphodiesterase [Streptomyces albus J1074]
          Length = 957

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 16/193 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
            +   + E      ++   +  D L+ L N + F   +          +   +++F D+D
Sbjct: 427 FNSRDVTERVRLQAQLQHSAEHDPLTDLPNRALFTRRVSQALSGRRSSDRGAAVLFIDLD 486

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--- 194
            FK +ND  GH  GD+++   + +L           RLGG+EFAA  LG + ++ A    
Sbjct: 487 GFKAVNDTIGHQAGDELLVHAARRLDEAVRAGDTAARLGGDEFAALILGDTGEDRAAREG 546

Query: 195 ----LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
               LA+ LRK +  S+     G  + +  S G+A     +    ++  AD A+Y AK +
Sbjct: 547 HIQELADRLRKRL--SEPYAIDGNDVRVAASIGVAFAEPGQNAGELLRNADLAMYRAKAA 604

Query: 251 GRNRVVCFSDIEN 263
           G++RVV ++    
Sbjct: 605 GKDRVVLYAPQMQ 617


>gi|262171751|ref|ZP_06039429.1| GGDEF family protein [Vibrio mimicus MB-451]
 gi|261892827|gb|EEY38813.1| GGDEF family protein [Vibrio mimicus MB-451]
          Length = 371

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 9/177 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           K+L+ +  ++  LS  D L+GL N    +  L           +    V  D+D FK++N
Sbjct: 193 KQLYQANRQLEALSLTDSLTGLPNRRKAMHQLALHWNLSREQKKPFVCVMIDVDGFKEVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D++GH +GDKV+  ++  L   F     V RLGG+EF A    +       +A  +   +
Sbjct: 253 DSYGHDIGDKVLTIIAHALKDHFRNDDLVCRLGGDEFLAICPNTDAVSGVHIAEHVCDEV 312

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           E  +I +  G     ++S G+AE     +    ++  ADQA+Y+AK +G+NRV  F+
Sbjct: 313 ELLEIPV-EGIHWQGSVSMGVAEFDPNMKDHHELLRAADQAVYLAKNNGKNRVCAFN 368


>gi|229111519|ref|ZP_04241070.1| Sensory box/GGDEF family protein [Bacillus cereus Rock1-15]
 gi|229129325|ref|ZP_04258296.1| Sensory box/GGDEF family protein [Bacillus cereus BDRD-Cer4]
 gi|229146619|ref|ZP_04274986.1| Sensory box/GGDEF family protein [Bacillus cereus BDRD-ST24]
 gi|228636789|gb|EEK93252.1| Sensory box/GGDEF family protein [Bacillus cereus BDRD-ST24]
 gi|228653930|gb|EEL09797.1| Sensory box/GGDEF family protein [Bacillus cereus BDRD-Cer4]
 gi|228671901|gb|EEL27194.1| Sensory box/GGDEF family protein [Bacillus cereus Rock1-15]
          Length = 415

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          +EK++I+ FDID FK +
Sbjct: 239 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRNDEKIAIILFDIDNFKTV 298

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 299 NDTYGHDFGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 358

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q    S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 359 IETKQFTGIS----KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 410


>gi|329903038|ref|ZP_08273350.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327548516|gb|EGF33182.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 307

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 66/258 (25%), Positives = 110/258 (42%), Gaps = 19/258 (7%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIA----NIFLFYIGLTPFYGL--EYILVENLSLVIIS 75
             P   + +    F +  AT+  +A    + +L  I    F     + + ++ L  VI++
Sbjct: 51  LGPFMLVAFSYGTFRLGSATLAGLAVGSMSAYLAMILTRNFPAGYSDTLRMDLLQWVIVA 110

Query: 76  ITISLLL--GYISGSILKELFISYNRISQL---SRIDCLSGLLNHSAF-------ISSLG 123
           +T+ L++  G     +   L  +  ++ Q    +  D L+GL N           I+   
Sbjct: 111 LTLPLMVSVGTQVRKLRAALKTTRRQLQQFEEKAIRDELTGLYNRRHLHTELVAAIARAD 170

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                  +   D+D+FK IND  GH VGD ++   +            +GR GG+EF   
Sbjct: 171 QQGIPFCLCLIDVDHFKDINDRHGHLVGDVILREFAQVARDSIRDSDVIGRYGGDEFMQI 230

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              +  + A + A  LR       +     P   I++S G+A+    E ++ +I RAD A
Sbjct: 231 LPDTDLKGAVMHAERLRVYAHFLDLQ-GVLPPHAISLSIGVAQYRPAETVTALIERADTA 289

Query: 244 LYVAKKSGRNRVVCFSDI 261
           LY AK+ GRNRV    DI
Sbjct: 290 LYRAKERGRNRVEWIDDI 307


>gi|329906325|ref|ZP_08274386.1| putative signal peptide containing protein [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327547303|gb|EGF32143.1| putative signal peptide containing protein [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 862

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 10/176 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           +L  + ++++ LS  D L+GL N   F                 L+++  D+D+FK+ ND
Sbjct: 684 QLEDANDKLATLSATDGLTGLANRRHFDEILASEWGRASRTGMPLAVLMIDVDHFKKFND 743

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  L      +     R GGEEF+     +    A  LA+ +R  I
Sbjct: 744 CYGHQAGDACLRRIAAALQAGTRRSSDLAARYGGEEFSIVLPNTDGSTAWQLADVVRGAI 803

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVC 257
           E   +  +  PS  +TIS G+A      P  ++ ++  AD ALY+AK +GRNRV  
Sbjct: 804 EQLAMPHARAPSGLVTISIGVAICRAGSPGSVAGLLRAADDALYLAKDAGRNRVHL 859


>gi|322833108|ref|YP_004213135.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rahnella sp. Y9602]
 gi|321168309|gb|ADW74008.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rahnella sp. Y9602]
          Length = 694

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 12/192 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136
            +    + +   ++ RI  ++  D L+ L N   F   L    ++        + +  D+
Sbjct: 253 MMIADDVTDQQAAHARIHHMAHHDNLTSLPNRILFSQRLSEALQRDSYTHSHTATLCLDL 312

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FK +ND  GH VGD+++  ++ +L +       + R+GG+EFA    G      A  +
Sbjct: 313 DNFKNVNDALGHQVGDELLRAIAKRLRMTLRDDDTLARIGGDEFAVVLPGLKDISAAHQI 372

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           +  L + +      I  G S+ + +S GIA     E     ++  AD ALY AK++GRNR
Sbjct: 373 SKRLIESVR--PPVIIDGHSLSVGLSIGIALAGSTENTPDQLLRCADMALYEAKRNGRNR 430

Query: 255 VVCFSDIENNTC 266
              F  +E +  
Sbjct: 431 YEDFR-LEMDAA 441


>gi|320325677|gb|EFW81739.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320327040|gb|EFW83054.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 763

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 69/271 (25%), Positives = 117/271 (43%), Gaps = 41/271 (15%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE-------------NLSLVIISI 76
           Y  +F  +F   V  +    L  + L     L  ++ E              L L I +I
Sbjct: 185 YNGMFHQMFRYGVSLLLGAGLLTMHLMGMRALRLVMPEGAALHIPGTENSQQLGLTIAAI 244

Query: 77  TISLLLGYISGS------------------ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           T+ ++ G IS +                  +L +L  +   + Q++  D L+ L+N   F
Sbjct: 245 TLLIIAGSISAAMADKKLQGKEHDLQRVNALLSQLDQARVSLQQVAHYDPLTNLINRRGF 304

Query: 119 I----SSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  L  +   N  L+++F DID+FK+IND+ GH  GD+++  +++++         
Sbjct: 305 NQIFAEKLQEHTYNNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDV 364

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           V R GG+EF         +EA  LA  + + ++ +     +G  + +T S GIA      
Sbjct: 365 VSRFGGDEFCILLSIPDYEEARHLAYRVMQKMKETI--ALAGRRMVMTTSIGIAVFPRDG 422

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                ++  AD ALY +K +GRNRV  FS  
Sbjct: 423 STCDELLKHADLALYQSKGNGRNRVNFFSPA 453


>gi|291614778|ref|YP_003524935.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291584890|gb|ADE12548.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 1135

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 54/215 (25%), Positives = 95/215 (44%), Gaps = 13/215 (6%)

Query: 64  ILVENLSLVIISITISLLLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +  E L++  +     +++ Y++  S +     + + I  L+  D L+GL N    +  L
Sbjct: 659 VYPERLAITAVKDARGVVINYVASLSDITLHKAAEDEIRSLAFFDPLTGLPNRRLLMDRL 718

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                      +  +++F D+D FK +ND  GH +GD ++  ++ +L         V R+
Sbjct: 719 QQALVASSRSGKAGALLFLDLDNFKNLNDTLGHDIGDLLLQQVAQRLKNCVREGDTVARI 778

Query: 176 GGEEFAAAALGSSEQ--EAAILANDL-RKIIENS-QINISSGPSIHITISAGIAERCHK- 230
           GG+EF       S +  EAA     +  KII    +        +H T S G      + 
Sbjct: 779 GGDEFVVMLEDLSAESIEAASQTEAVGWKIISTLNKPYHLEKFEVHSTPSIGATLFDSRP 838

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           + I  +  +AD A+Y AKK+GRN +  F     +T
Sbjct: 839 QIIDDLFKQADIAMYQAKKAGRNTMRFFDPQMQDT 873


>gi|209966687|ref|YP_002299602.1| diguanylate cyclase, putative [Rhodospirillum centenum SW]
 gi|209960153|gb|ACJ00790.1| diguanylate cyclase, putative [Rhodospirillum centenum SW]
          Length = 383

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 9/222 (4%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101
           V+ +A   +    L       + L   L+     +  + ++        ++ F    R+ 
Sbjct: 135 VLNLAPAVVVLTVLLASGAGGFTLGNVLAHFGTGLFTAYVVALALERAARQSFALELRLE 194

Query: 102 QLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           + +RID L+GL N                 +   LS++  D+D+FK++ND  GH  GD +
Sbjct: 195 EEARIDPLTGLANRRRLEEQADLEVERARRFGRPLSVLMLDLDHFKRVNDEHGHARGDAL 254

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           ++ L+              R GG+EF A    ++  +A  LA  LR ++E   + +    
Sbjct: 255 MSALATLCRRALRQTDLFARAGGDEFVALLPETALDDATTLAERLRTLVEAEPL-LRGPV 313

Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  T+S G+A    H    + ++  AD ALY AK +GRNRV
Sbjct: 314 PVGATVSIGVATYVAHGRSWAAMLQAADDALYRAKAAGRNRV 355


>gi|83951362|ref|ZP_00960094.1| GGDEF [Roseovarius nubinhibens ISM]
 gi|83836368|gb|EAP75665.1| GGDEF [Roseovarius nubinhibens ISM]
          Length = 290

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 104/227 (45%), Gaps = 6/227 (2%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            F++ + T   +  + L  + + P      ILV +    +I+I++++ + Y  G  +  +
Sbjct: 13  LFAVVV-TACALTGVHLMQLVIYPPDLWRQILVTS---TVITISMAMPIAYFVGLQMAAV 68

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG-SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
                ++      D L+   +   F   +G + N  L ++  DID+FK +ND +GH  GD
Sbjct: 69  ERLTAQLEHAVNHDALTATCSRLRFYEEVGKARNWPLMLIATDIDHFKGVNDQYGHQAGD 128

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +   +  LV        V R GGEEF       +E EA   A  LR  +   +  +  
Sbjct: 129 AALRQFAQCLVRNCREDDIVARFGGEEFIILLRAETEPEALATAERLRSWVAAREF-VLD 187

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           G  +HIT S G+A       I   ++ +D ALY AK++GRNRV  + 
Sbjct: 188 GHVVHITASFGVARAEDAASIDRAMHASDLALYRAKEAGRNRVCAYD 234


>gi|91975244|ref|YP_567903.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91681700|gb|ABE38002.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB5]
          Length = 905

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 56/193 (29%), Positives = 86/193 (44%), Gaps = 11/193 (5%)

Query: 83  GYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFD 135
           G++S    + E      +I+ L+  D L+ L N S F   L             ++++ D
Sbjct: 457 GWVSTHEDITERLRDGEKIAYLAHYDSLTDLPNRSLFRQRLERKLEGAQRGASFALLYID 516

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAI 194
           ID FK IND  GHPVGD+++  ++ +L    G   FV RLGG+EFA    G+    +A  
Sbjct: 517 IDEFKSINDTLGHPVGDELLKQVAVRLQACVGEDEFVARLGGDEFAIVTNGAGDSDQATE 576

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           +A  + + I      +  G  +    S GIA      + I  ++  AD A+Y AK  GR 
Sbjct: 577 MAERILQAIRTPYQCL--GHRLSTDASIGIAIAPRDGDDIDQLVKNADLAMYGAKAHGRR 634

Query: 254 RVVCFSDIENNTC 266
               F    +   
Sbjct: 635 TFRFFQPEMDAVA 647


>gi|325914024|ref|ZP_08176380.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325539793|gb|EGD11433.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 571

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 11/196 (5%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNE 127
           ++T++         +L  L +    + Q S  D L+GL N      +L           +
Sbjct: 369 ALTVAEAAAEQLSLVLHSLRL-RETLRQQSIRDPLTGLYNRRYLEEALNHELARCTRRVQ 427

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            LS++  D+D+FK+ ND  GH  GD+V+A + + L+          R GGEE        
Sbjct: 428 PLSVLMLDVDHFKRFNDLHGHSGGDRVLAAIGELLLTQTRGEDICCRYGGEELTIILPEV 487

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERC-HKEPISTIIYRADQALY 245
               A  +A  LR  IE+ Q+ ++ G S+  IT S G A    H    + ++ RAD+ALY
Sbjct: 488 DLTTARKMAEKLRAGIESLQV-MADGVSLPKITASFGAASFPEHAGNAAQLLRRADEALY 546

Query: 246 VAKKSGRNRVVCFSDI 261
            AK++GRN+V+  ++ 
Sbjct: 547 RAKQAGRNQVISAAEA 562


>gi|74317209|ref|YP_314949.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74056704|gb|AAZ97144.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) and Response Regulator
           Receiver modulation [Thiobacillus denitrificans ATCC
           25259]
          Length = 836

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 11/186 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
              + E       + + +  D L+GL N       +          ++  S++F DID F
Sbjct: 377 ARDITERKHFEQELRRQATHDALTGLPNRILLEDQIEAVVAHSARSHKLASVLFLDIDNF 436

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
           K+IN++ GH  GD ++   + +L         V R GG+EF       S       + + 
Sbjct: 437 KRINESLGHAAGDAMLRHAAQRLRDCVRPTDVVARYGGDEFTIVLGDLSHVDNIPAILHK 496

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           +R   E     + SG  ++ + S G++   H  +  +T++  AD A+Y +K SGRNR   
Sbjct: 497 VRAAFET--PLVISGQEVYASFSVGVSVYPHDGDDGATLLKNADTAMYRSKASGRNRYQF 554

Query: 258 FSDIEN 263
           ++   N
Sbjct: 555 YAPEMN 560


>gi|83643391|ref|YP_431826.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83631434|gb|ABC27401.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 826

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 99/224 (44%), Gaps = 15/224 (6%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           GLT  YG   IL  N    I           I    + +   + +R+ QL+  D L+GL 
Sbjct: 342 GLTDIYGRRRILQSNK---IPFRFFGKPCALIVSVDITDRVEAQSRVEQLAFHDPLTGLP 398

Query: 114 NHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N + F   L        ++    +++  D+D FK IND+ GH VGD+++  ++  L    
Sbjct: 399 NRNLFYDRLTMDIARSRNHGAYGALLLIDLDNFKNINDSLGHSVGDELLRNVAKNLRNCL 458

Query: 167 GTPMFVGRLGGEEFAAAAL--GSSEQEAAILANDLRKII--ENSQINISSGPSIHITISA 222
              + VGRLGG+EF       G + +EA   AN +   +  E S     +     +T S 
Sbjct: 459 DEEITVGRLGGDEFTVIMPELGRTPEEAEQNANLIAAKVLSELSTPFFFNTQEFTVTASM 518

Query: 223 GIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           G+A    K+     I+  AD AL+ AK  GRN+V  F     + 
Sbjct: 519 GVALYPDKDANTEVILRYADTALFQAKHEGRNKVTIFKAEMADA 562


>gi|330821779|ref|YP_004350641.1| diguanylate cyclase/phosphodiesterase [Burkholderia gladioli BSR3]
 gi|327373774|gb|AEA65129.1| diguanylate cyclase/phosphodiesterase [Burkholderia gladioli BSR3]
          Length = 1065

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 92/187 (49%), Gaps = 12/187 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQ 141
            + +   S  RI  L+  D L+ L N + F   LG+  E       +L+++F D+D FK 
Sbjct: 614 DITDRKKSEARIQFLAEHDVLTELPNRALFTRRLGTAIEQARHNDSRLAVLFIDLDRFKD 673

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILANDL 199
           IND FGH  GD ++  +S +L+        V RLGG+EF       GS+   A +L   L
Sbjct: 674 INDTFGHHAGDGLLRSVSQRLLQSVRAGDTVSRLGGDEFTVLLGGAGSAADVAHLLDERL 733

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +++  + +   G ++ +  S GIA    H E I T++  AD A+Y AK  GRN V  F
Sbjct: 734 LPLMQ--EPHQIGGMTLQVACSIGIALYPDHGEDIETLMQNADAAMYRAKSGGRNLVKFF 791

Query: 259 SDIENNT 265
           S     +
Sbjct: 792 SPEMAES 798


>gi|293446335|ref|ZP_06662757.1| cellulose synthesis regulatory protein [Escherichia coli B088]
 gi|332278877|ref|ZP_08391290.1| cellulose synthesis regulatory protein [Shigella sp. D9]
 gi|291323165|gb|EFE62593.1| cellulose synthesis regulatory protein [Escherichia coli B088]
 gi|332101229|gb|EGJ04575.1| cellulose synthesis regulatory protein [Shigella sp. D9]
          Length = 569

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 367 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 426

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 427 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 486

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 487 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 546

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 547 LADRRLYLAKQAGRNRVCA 565


>gi|253688995|ref|YP_003018185.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251755573|gb|ACT13649.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 471

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 62/185 (33%), Positives = 90/185 (48%), Gaps = 9/185 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136
           Y    +L  LF    ++   S  D L+ LLN           IS     +  LSI   DI
Sbjct: 289 YKINMLLGSLFDEVQKLE--SGKDTLTLLLNRRFLPTILRHEISLAMHSSTPLSIAMIDI 346

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK +ND +GH  GD ++  +++ L        +V R GGEEF    + + +  A  + 
Sbjct: 347 DHFKTVNDTYGHAAGDNILKRIAEVLYESTRNSDYVFRYGGEEFMIVLIETPKVAAHTII 406

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LRK I++  I++ +G SI +TISAGIA          +I  AD ALY AK +GRNR+ 
Sbjct: 407 ERLRKKIQDHPIHLQNGESITMTISAGIAVYSGHPDYECLIKAADDALYQAKANGRNRIE 466

Query: 257 CFSDI 261
              + 
Sbjct: 467 YAQEE 471


>gi|218554535|ref|YP_002387448.1| putative diguanylate cyclase [Escherichia coli IAI1]
 gi|218361303|emb|CAQ98887.1| putative diguanylate cyclase [Escherichia coli IAI1]
          Length = 564

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 MCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 542 LADRRLYLAKQAGRNRVCA 560


>gi|257095254|ref|YP_003168895.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257047778|gb|ACV36966.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 640

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 11/194 (5%)

Query: 80  LLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSI 131
           L+ GY+   + +     + + I +L   D L+GL N            S      E L++
Sbjct: 158 LVSGYVHTLVDITRHKEAEDGIQRLVHADPLTGLANRILLDARVRQDLSRAHRAREPLAL 217

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +F D+D FK +ND  GH +GD+++  ++ +L  +      + RLGG+EF      +    
Sbjct: 218 IFLDVDRFKNVNDTLGHRIGDELLIQVAARLDSIVRDEDTLCRLGGDEFVLVLPNTDADG 277

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
           AA +A  L KI   S         +  T+SAGIA      + ++++   AD A+Y AK  
Sbjct: 278 AANVAEKLLKITAPS--YRLEQHVLTCTVSAGIAMYPTDGDSVASLSTSADAAMYRAKAR 335

Query: 251 GRNRVVCFSDIENN 264
           G N    F+     
Sbjct: 336 GGNAYSFFTAEMQE 349


>gi|90022647|ref|YP_528474.1| response regulator receiver modulated diguanylate cyclase
           [Saccharophagus degradans 2-40]
 gi|89952247|gb|ABD82262.1| response regulator receiver modulated diguanylate cyclase
           [Saccharophagus degradans 2-40]
          Length = 303

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 9/173 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           +L  +   + +L+  D L+ +LN   F   +  Y  +       + ++  DID+FK  ND
Sbjct: 128 QLARANKELMKLANHDGLTKILNRRGFDEVMDRYWRQARRDQSEIGLLLIDIDHFKAYND 187

Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD+ ++ ++  +   +        R GGEEFA     +  + A  + + + + I
Sbjct: 188 TYGHVRGDETLSAVAHSIEKALMRPIDIAARYGGEEFAVLLPCTGMEGAMTVGDRILEAI 247

Query: 204 ENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  I   + P    +T+S G+A          +I RAD ALY AK+ GRNRV
Sbjct: 248 RDEAIPHLTSPVKSFLTVSIGVALSSGLASAEDLIKRADAALYQAKERGRNRV 300


>gi|254247987|ref|ZP_04941308.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
 gi|124872763|gb|EAY64479.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
          Length = 466

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 22/233 (9%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI------LK 91
           ++A  IF    FL        YG+   L    S   I  +   L+  +S S+      L+
Sbjct: 240 WLAHAIFAGGFFLLS------YGVVQALQTTRSFSAI-YSQEDLMSRLSESMARTESALQ 292

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL  +  ++  ++  D ++G  N   FI+ +               ++  D+D FK IND
Sbjct: 293 ELRRTNQKLEYMAATDPMTGASNRRQFIAQVEREIVRAERDGTPFCLLALDLDNFKNIND 352

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH +GD+V+  +  Q +        + R+GGEEF A       + A + A  +R  I 
Sbjct: 353 AYGHQIGDEVLRGVVRQCLEAIRPAGALARVGGEEFMALLPEMPLEGARMTAERVRSSIS 412

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
           +S   +     + +T+S G+A+       +  ++   D+ LY AK+ GRNRVV
Sbjct: 413 SSPFGL-DFKRVQVTVSVGVAQYGVDGSTVDALLRVVDERLYQAKREGRNRVV 464


>gi|90423253|ref|YP_531623.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
 gi|90105267|gb|ABD87304.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
          Length = 401

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 66/249 (26%), Positives = 118/249 (47%), Gaps = 21/249 (8%)

Query: 23  SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL 82
           +P   +I +S+  ++ +  ++ ++   +     TP      +LV      ++++   + +
Sbjct: 139 TPRQTVIAWSLM-AVGVGALLLLSERPISLPMATPLERFATMLV-----FVLALGRCMFI 192

Query: 83  GYISGSILK-------ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEK 128
           G +S ++ +       EL  +Y RI +L+ +D L+G  N    +                
Sbjct: 193 GVVSSALRERLYRRGVELKATYKRIEELAELDELTGASNRRCIMRMLDDEILRARRTAMP 252

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+I   D+D+FK+IND +GHP GD+V+   +  +          GR GGEEF      ++
Sbjct: 253 LTIALIDLDWFKRINDLYGHPTGDEVLRTFAITIFANIRNVDRFGRYGGEEFLLVLPETT 312

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +  A    + LR+I+ +   +  S   + +T+S GIA  C+ E    ++ RAD ALY AK
Sbjct: 313 QDSAQPTLDRLRRIVADLDWSAFS-QGMTVTMSVGIASWCNNETPEALLARADDALYEAK 371

Query: 249 KSGRNRVVC 257
             GRNRV  
Sbjct: 372 ADGRNRVAL 380


>gi|237808743|ref|YP_002893183.1| diguanylate cyclase with PAS/PAC sensor and hemerythrin-like
           metal-binding domain [Tolumonas auensis DSM 9187]
 gi|237501004|gb|ACQ93597.1| diguanylate cyclase with PAS/PAC sensor and hemerythrin-like
           metal-binding domain [Tolumonas auensis DSM 9187]
          Length = 762

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 13/195 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
           Y     + E   +  ++  ++  D L+GL N   F   L           ++  ++F D+
Sbjct: 436 YAVARDVGERKETELKLRFMAYHDGLTGLPNRQLFFDRLARSISNAKRNKKQFGLLFIDL 495

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FKQ+ND +GH  GD  +  ++D+ V        V R+ G+EF        +  EA  +
Sbjct: 496 DGFKQVNDRYGHEAGDITLQTVADRFVSSLRENDTVARMAGDEFVVILNDLGNAHEAGYV 555

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
           A  L   I  + I I+ G   H+  S GIA        + T++  AD A+Y  KK+G+N 
Sbjct: 556 ARKLLDAIAPA-IVIADGMECHVGASIGIAIFPDNGTEMDTLLVAADAAMYQCKKNGKNN 614

Query: 255 VVCFSDI---ENNTC 266
            +   DI   E N  
Sbjct: 615 YMFSGDISSAETNEA 629


>gi|332528689|ref|ZP_08404666.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Hylemonella gracilis ATCC 19624]
 gi|332041755|gb|EGI78104.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Hylemonella gracilis ATCC 19624]
          Length = 968

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 12/189 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYF 139
           G  + +   +     +L+  D L+GL N    +  L              ++ F D+D F
Sbjct: 529 GRDISDRKRAEGETQRLAFYDTLTGLPNRRLLLDRLAQAQAACARTKRHGALFFLDLDNF 588

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILAN 197
           K +ND  GH VGD ++  ++ +L+          RLGG+EF      L   E EAA  A 
Sbjct: 589 KDLNDTLGHDVGDLLLKQVAQRLLSCLRESDTAARLGGDEFVVMLLELDEDENEAAAHAE 648

Query: 198 DLRKII--ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
            + + I    +     +G   + + S G+       + +  ++ RAD A+Y AK +GRN 
Sbjct: 649 RVGEKILKRLNAPYELAGREHNSSPSIGLTVFSGGAQGVDELLKRADLAMYQAKAAGRNT 708

Query: 255 VVCFSDIEN 263
           +  F     
Sbjct: 709 LRFFDPQMQ 717


>gi|330877007|gb|EGH11156.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 756

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 69/271 (25%), Positives = 117/271 (43%), Gaps = 41/271 (15%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE-------------NLSLVIISI 76
           Y  +F  +F   V  +    L  + L     L  ++ E              L L I +I
Sbjct: 178 YNGMFHQMFRYGVSLLLGAGLLTMHLMGMRALRLVMPEGAALHIPGTENSQQLGLTIAAI 237

Query: 77  TISLLLGYISGS------------------ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           T+ ++ G IS +                  +L +L  +   + Q++  D L+ L+N   F
Sbjct: 238 TLLIIAGSISAAMADKKLQGKEHDLQRVNALLSQLDQARVSLQQVAHYDPLTNLINRRGF 297

Query: 119 I----SSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  L  +   N  L+++F DID+FK+IND+ GH  GD+++  +++++         
Sbjct: 298 NQIFAEKLQEHTYNNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDV 357

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           V R GG+EF         +EA  LA  + + ++ +     +G  + +T S GIA      
Sbjct: 358 VSRFGGDEFCILLSIPDYEEARHLAYRVMQKMKETI--ALAGRRMVMTTSIGIAVFPRDG 415

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                ++  AD ALY +K +GRNRV  FS  
Sbjct: 416 STCDELLKHADLALYQSKGNGRNRVNFFSPA 446


>gi|311696891|gb|ADP99764.1| GGDEF domain membrane protein [marine bacterium HP15]
          Length = 351

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 15/225 (6%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR 99
           A  +  A +  F+        ++ + + N+ L+ ++I     +  I+         S +R
Sbjct: 123 AVFMGTAAVIFFFKYQDAPDMIQPLPIANMGLMSLTILAFSHIYEIT------REQSESR 176

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGD 152
           + ++++ D L+GL N +          +        LS++  D+D+FKQ+ND  GH  GD
Sbjct: 177 LLKMAQTDALTGLANRARLSDVFEQERKRSLRNGTPLSVLVLDLDHFKQVNDQHGHEAGD 236

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +  ++  L           RLGGEEFA     ++  +A  +A+ +R  IE+  +    
Sbjct: 237 LALRHVASTLRASLRATDLATRLGGEEFAILLTNTTADQAHRVADKIRGAIESHPVPYQD 296

Query: 213 GPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVV 256
             SI +TIS GIA+       + ++I RADQ LY AK SGRNR++
Sbjct: 297 -QSIGLTISGGIAQFGPDGGDLRSLIGRADQYLYHAKDSGRNRII 340


>gi|289663084|ref|ZP_06484665.1| putative sensor protein [Xanthomonas campestris pv. vasculorum
            NCPPB702]
          Length = 1011

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 8/176 (4%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
            +L  L I  +   + +  D L+GL N   F  +L             L +   DID+FK+
Sbjct: 836  LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSARPLVLAILDIDHFKR 895

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            IND++ H  GD V+  +   L           RLGGEEFA     ++ +EA  L   +R 
Sbjct: 896  INDHYSHASGDAVLHEVGVLLTAAARASDLPARLGGEEFALLLADTTLEEAQALCLRIRA 955

Query: 202  IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +  +++ +  S   + +T SAG+AE    +  S+++ RAD ALY AK +GR+R+  
Sbjct: 956  LF-HARHDWGSVEGLQVTFSAGVAELRDDDTGSSLMQRADHALYEAKSAGRDRICV 1010


>gi|322421398|ref|YP_004200621.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Geobacter sp. M18]
 gi|320127785|gb|ADW15345.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. M18]
          Length = 855

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 91/199 (45%), Gaps = 15/199 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEK 128
           + IS L G+I    + E+  +   I  L+  D L+ L N S   + +             
Sbjct: 392 VAISRLDGFIL--DITEIKRAEENIFFLAHHDPLTRLPNRSTLYARIEQVLSVAQKSRRN 449

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           ++++F DID FKQIND+ GH VGD+++  ++ +L     +   V RLGG+EF        
Sbjct: 450 VALLFLDIDGFKQINDSMGHDVGDRLLQSVARKLGDCTRSCDVVSRLGGDEFVVVLWDCG 509

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247
             E  ++A  +     N+   +  G ++ +T S GI+           ++  AD A+Y A
Sbjct: 510 VAETTMVAEKII----NAGFPLP-GTNVTVTPSIGISVYPDDGRDYLALLKHADIAMYHA 564

Query: 248 KKSGRNRVVCFSDIENNTC 266
           KKSG N    F+   N   
Sbjct: 565 KKSGGNNFEFFTHKLNELA 583


>gi|242280956|ref|YP_002993085.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
 gi|242123850|gb|ACS81546.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
          Length = 333

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 63/190 (33%), Positives = 89/190 (46%), Gaps = 11/190 (5%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLS 130
           IS L      S +  + I  +R+ + +  D L+GL             I         LS
Sbjct: 144 ISELFQLGIISTVAAISIENSRLFRQTIEDSLTGLYMRRYLFIRMREEIQRFKRRGGPLS 203

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSE 189
           ++  D+D FK +ND +GH  GD V+  +   L            R GGEEF     GS +
Sbjct: 204 VIMIDVDNFKNVNDTYGHATGDAVLRSVGHILHENSRQGVDIPCRYGGEEFVILMPGSEK 263

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247
           +EA I+A  +R   E++ I+   G  I IT S GIA  E C +     ++  AD+ LY A
Sbjct: 264 REAEIVAERIRAACEDATISAPEGK-IKITASCGIASVEECQEPSADALLNIADKRLYCA 322

Query: 248 KKSGRNRVVC 257
           K+SGRNRVV 
Sbjct: 323 KESGRNRVVA 332


>gi|238792826|ref|ZP_04636457.1| hypothetical protein yinte0001_5820 [Yersinia intermedia ATCC
           29909]
 gi|238727934|gb|EEQ19457.1| hypothetical protein yinte0001_5820 [Yersinia intermedia ATCC
           29909]
          Length = 414

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 13/177 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQ 141
            + E       +   +  D L+GL N   F        +    Y +  S++  D D+FKQ
Sbjct: 242 DITEQKRLEQALEDAALRDPLTGLGNRRQFFNLVEHANAQSQRYAQGFSLMLVDADHFKQ 301

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND FGH  GD+V+  L+  L         + R GGEEFA     ++   A  +A  +R+
Sbjct: 302 VNDQFGHHKGDEVLILLARTLESRIRESDMIFRWGGEEFAILLPSTNLAGALQVAESIRE 361

Query: 202 IIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            ++   Q N+       +T+S G+A+    E   ++  R D+ALY AK +GRNRV+ 
Sbjct: 362 AVQLVCQPNLP-----QLTVSIGVAQHQVGEDSDSLFKRMDEALYRAKAAGRNRVLV 413


>gi|330881084|gb|EGH15233.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 566

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 88/175 (50%), Gaps = 10/175 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +L      +  LS  D L+G  N   F   +         +   LSI+  DID+FK
Sbjct: 390 SDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSIIMLDIDHFK 449

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +A  LA  LR
Sbjct: 450 RINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRGSQAYQLALSLR 509

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + + N  I    G    +T S GIA     E I T++ RAD  +Y AK++GR+RV
Sbjct: 510 EGLRNQVI---EGVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQAGRDRV 561


>gi|228967077|ref|ZP_04128113.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228792446|gb|EEM40012.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 415

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ +D L+ + N   F   L          +EK++I+ FDID FK +
Sbjct: 239 ITELDEIYQEQERLAMVDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTV 298

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 299 NDTYGHDFGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 358

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q    S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 359 IETKQFTGIS----KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 410


>gi|114561982|ref|YP_749495.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114333275|gb|ABI70657.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 321

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 90/184 (48%), Gaps = 13/184 (7%)

Query: 81  LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIV 132
           L+G I   + +   +   +++ +L+  D L+GL N  +F S           Y +  S++
Sbjct: 139 LIGLIGISTDITAAYHLRSKLERLANTDPLTGLFNRRSFTSFCEHEFFRATRYFQPFSLM 198

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID FK++ND +GH VGD+VI  +++           + R+GGEEFA     +    A
Sbjct: 199 IIDIDLFKKVNDTYGHLVGDEVIKRVANICNEHVREADVLARIGGEEFAILLPDTDIDSA 258

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSG 251
            +LA  LR+     Q       +  ITIS G+A  R   +    I  RAD+ALY +K  G
Sbjct: 259 YVLAERLREA----QQQYEEQKTPSITISIGVATLRSQDKAFLEIFKRADKALYSSKNVG 314

Query: 252 RNRV 255
           RN V
Sbjct: 315 RNSV 318


>gi|213968309|ref|ZP_03396453.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
 gi|213926947|gb|EEB60498.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
          Length = 763

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
            S L+E       ++ ++  D L+ L N +  ++ L         + E+ +++F D+D F
Sbjct: 315 QSRLQERERISEELAYIAFHDELTALFNRAYLMNELADAFSNPDHHYERATVLFLDLDGF 374

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
           K +ND+ GH  GD+++  ++++L         + R+GG+EFA   +G  + + A  +A  
Sbjct: 375 KVVNDSMGHLAGDQLLKRVANRLQNCVRANDVLARIGGDEFAILLVGKDQPETAVKMAER 434

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           +   +  + I I  G  I I+ S GI            ++  AD A+Y AKK GR R   
Sbjct: 435 IVSQLHAA-IEI-EGQDIFISCSIGIVTAGEGHSKPEDLLRDADVAMYSAKKQGRGRWSL 492

Query: 258 FSDIENNTC 266
           F+       
Sbjct: 493 FNASMREAA 501


>gi|86358001|ref|YP_469893.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|86282103|gb|ABC91166.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
          Length = 355

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 93/183 (50%), Gaps = 8/183 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKL-----SIVFFDIDYFKQIN 143
           + ++    +   +++  D L+ L N  AF   L + +N        +++  DID FK+IN
Sbjct: 162 MDQVRKELDEYKRIANTDSLTRLSNRRAFDDRLAAVFNNPGMRPVTALLLADIDNFKKIN 221

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHPVGDK++A ++  +       +FV R GGEEFA    G++ +E   +A  +R+ +
Sbjct: 222 DTYGHPVGDKILATVASVIRSNVRRDVFVARAGGEEFALIIEGNTAEEVTAIAERIRRTL 281

Query: 204 ENSQINISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E +    S     +  IT+S GI    + E    +  + D ALY AK +GRN +V + D 
Sbjct: 282 ETTPFKNSRTRVNYGPITVSIGICMASNAEDAGELYSKTDIALYGAKNAGRNCIVLYQDG 341

Query: 262 ENN 264
              
Sbjct: 342 MQK 344


>gi|307312459|ref|ZP_07592093.1| diguanylate cyclase [Escherichia coli W]
 gi|306907630|gb|EFN38133.1| diguanylate cyclase [Escherichia coli W]
 gi|315061255|gb|ADT75582.1| predicted diguanylate cyclase [Escherichia coli W]
 gi|323378168|gb|ADX50436.1| diguanylate cyclase [Escherichia coli KO11]
          Length = 564

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 542 LADRRLYLAKQAGRNRVCA 560


>gi|300115282|ref|YP_003761857.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Nitrosococcus watsonii C-113]
 gi|299541219|gb|ADJ29536.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosococcus watsonii C-113]
          Length = 966

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 9/185 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
           G  + E   +  R++ L+  D L+ L N   F             +  +  +++FD+D F
Sbjct: 516 GHDVTEREQAEQRLAWLADHDPLTELFNRRRFQYEFERILRASIRHGYRGGLLYFDLDQF 575

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND  GH  GD ++  ++D+L  V      V RLGG+EFA        +    +A ++
Sbjct: 576 KYINDTSGHQAGDALLRMVADKLRQVVRGSDVVARLGGDEFAVVICECDVEGVLQIAQNI 635

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +   + +   G +  I++S GIA    H   I  ++  AD A+Y AK+ GR R   F
Sbjct: 636 CNQLSILEFSARGG-NHSISLSIGIALFPLHGATIRDLMANADVAMYQAKEEGRGRWHLF 694

Query: 259 SDIEN 263
           S  E 
Sbjct: 695 SSDEQ 699


>gi|134093574|ref|YP_001098649.1| hypothetical protein HEAR0293 [Herminiimonas arsenicoxydans]
          Length = 556

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 13/227 (5%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR 99
           A+   +    L Y  + P  GL +   E     +   + +L  G+I+   + E       
Sbjct: 331 ASASSLLPWHLEYRVILPRQGLRWRQGEARPRRLPDGS-TLWHGFIT--DITERKRIEIE 387

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           +   + ID L+ L N   F++ +             + +++  D+D+FK IND++GH +G
Sbjct: 388 LQGFATIDFLTQLPNRRYFMTRMEEELARTRRIDGARTAVLMCDLDHFKTINDSYGHAIG 447

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+   +  L         VGR+GGEEFA     +   EA I A  +R  +    + I+
Sbjct: 448 DLVLKHFAVILRNALRRNDMVGRVGGEEFAVVLFDAGVAEAEIFAQRVRSQLAEIPL-IA 506

Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +I++T+S GIA        I   + R+D ALY AK++GRNR+  
Sbjct: 507 LNQNINVTVSIGIAMMHASDANIDVSLSRSDTALYRAKQAGRNRIEI 553


>gi|104780040|ref|YP_606538.1| sensory box protein [Pseudomonas entomophila L48]
 gi|95109027|emb|CAK13723.1| putative sensory box protein(GGDEF domain/EAL domain) [Pseudomonas
            entomophila L48]
          Length = 1276

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 15/192 (7%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            + + E   S  RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 825  TDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYTALQQAERQKAWVVLMFLDLDRFK 884

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAIL 195
             IND+ GH  GD+++  ++++L+        V R+GG+EF       + +E     A  +
Sbjct: 885  PINDSLGHAAGDRMLKDMAERLLACVDNDDTVARMGGDEFTLLLQPKATRELALNRAIHV 944

Query: 196  ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            A  +   +      +       +T S GIA        +S ++  AD A+Y AK+ G+N 
Sbjct: 945  AEHILDSL--VTPFVLENREFFVTASIGIALSPQDGGELSQLMKNADTAMYHAKERGKNN 1002

Query: 255  VVCFSDIENNTC 266
               +    N + 
Sbjct: 1003 FQFYQADMNASA 1014


>gi|330984890|gb|EGH82993.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 763

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 69/271 (25%), Positives = 117/271 (43%), Gaps = 41/271 (15%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE-------------NLSLVIISI 76
           Y  +F  +F   V  +    L  + L     L  ++ E              L L I +I
Sbjct: 185 YNGMFHQMFRYGVSLLLGAGLLTMHLMGMRALRLVMPEGAALHIPGTENSQQLGLTIAAI 244

Query: 77  TISLLLGYISGS------------------ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           T+ ++ G IS +                  +L +L  +   + Q++  D L+ L+N   F
Sbjct: 245 TLLIIAGSISAAMADKKLQGKEHDLQRVNALLSQLDQARVSLQQVAHYDPLTNLINRRGF 304

Query: 119 I----SSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  L  +   N  L+++F DID+FK+IND+ GH  GD+++  +++++         
Sbjct: 305 NQIFAEKLQEHTYNNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDV 364

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           V R GG+EF         +EA  LA  + + ++ +     +G  + +T S GIA      
Sbjct: 365 VSRFGGDEFCILLSIPDYEEARHLAYRVMQKMKETI--ALAGRRMVMTTSIGIAVFPRDG 422

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                ++  AD ALY +K +GRNRV  FS  
Sbjct: 423 STCDELLKHADLALYQSKGNGRNRVNFFSPA 453


>gi|302341745|ref|YP_003806274.1| periplasmic/7TM domain sensor diguanylate cyclase [Desulfarculus
           baarsii DSM 2075]
 gi|301638358|gb|ADK83680.1| periplasmic/7TM domain sensor diguanylate cyclase [Desulfarculus
           baarsii DSM 2075]
          Length = 576

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 69/260 (26%), Positives = 111/260 (42%), Gaps = 26/260 (10%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           L++          + P  +  Y + +  + +AT IF+    L  +GL     L       
Sbjct: 324 LAVLAGVMALRAGYRPARY--YLAAWSILALATFIFV----LREVGLIDGGDLV-----R 372

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQ-------LSRIDCLSGLLNHSAFISS 121
            SL++ S   S+LL       ++ L    + +         LS+ D L+GL N   F   
Sbjct: 373 RSLLVGSALESMLLSLALADRIRLLRQEKDILRHRALLLGRLSQTDGLTGLFNKRHFDQE 432

Query: 122 L-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L             L ++  D+D FK  NDN GHP GD+V+  L++ +           R
Sbjct: 433 LLAQVRRASESGAPLCLLMLDVDDFKAFNDNHGHPAGDQVLQALAETIRASLRQADAAFR 492

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
            GGEEFA      S ++AA +   +R+         + G  +   +S G+A     E  +
Sbjct: 493 YGGEEFAVLLPDMSAEQAAAVGQRIRQTFACQSFLTAHGA-VSCGVSLGLACLGQGEDAA 551

Query: 235 TIIYRADQALYVAKKSGRNR 254
           +++ RAD ALY AK+ G+NR
Sbjct: 552 SLLRRADAALYQAKRQGKNR 571


>gi|289647598|ref|ZP_06478941.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 712

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 95/197 (48%), Gaps = 14/197 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           ++++  +  S++++L   Y ++ + +  D L+GLLN      ++          ++ L +
Sbjct: 254 AMVMTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLFQAVEGMLLRKEQTDKYLVV 310

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQ 190
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF     G    +
Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           +AA +A  L + +   +     G  I +  S GIA        +  ++  AD A+Y AK+
Sbjct: 371 QAAKIAEKLIERVSGRRQ--VDGVDITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKR 428

Query: 250 SGRNRVVCFSDIENNTC 266
           +GR +   +    N   
Sbjct: 429 AGRQQYRFYDQNMNGRA 445


>gi|288942799|ref|YP_003445039.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Allochromatium vinosum DSM 180]
 gi|288898171|gb|ADC64007.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Allochromatium vinosum DSM 180]
          Length = 1030

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 11/185 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYF 139
                +        R+ QL+  D L+GL N   F  +L     G    +++++F D+D F
Sbjct: 570 FHARDITRQREVQRRLHQLAHYDGLTGLANRQFFRQNLSIHLMGPEPAQIAVLFLDLDRF 629

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LAN 197
           K IND  GH  GD+++  ++++L  V  +   V R GG+EF  A LG  +++A +   A+
Sbjct: 630 KTINDTLGHAAGDQLLRTVAERLRSVLRSEDLVARWGGDEFVVALLGVQDRDAVMHKAAD 689

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
            + ++ E   +   +G SI +  S G A           +I  AD ALY AK +GR    
Sbjct: 690 IIARLAEPHPL---AGRSIRVPTSIGAALYPEGGTSADLLIRNADLALYRAKSNGRGHCQ 746

Query: 257 CFSDI 261
            F  +
Sbjct: 747 LFDPV 751


>gi|238783668|ref|ZP_04627688.1| hypothetical protein yberc0001_31860 [Yersinia bercovieri ATCC
           43970]
 gi|238715381|gb|EEQ07373.1| hypothetical protein yberc0001_31860 [Yersinia bercovieri ATCC
           43970]
          Length = 431

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 57/186 (30%), Positives = 85/186 (45%), Gaps = 15/186 (8%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLS 130
           + L+L  I    + E       +   +  D L+ L N   F        +    Y    S
Sbjct: 250 VRLMLCIIH--DITEQKRLEQALEHAALRDPLTDLGNRRQFFPLVEHAHAQSQRYGHCFS 307

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D+FK IND  GH  GD+V+  L+  L  +      V R GGEEF      +  +
Sbjct: 308 LILLDVDHFKSINDQLGHNKGDEVLILLARTLESIIRESDSVFRWGGEEFTILLPLTHLE 367

Query: 191 EAAILANDLRKIIENS-QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            A  LA  +R+ I+   Q N+       +T+S G+A+    E   ++  R D+ALY AK 
Sbjct: 368 GALQLAESIRETIQMICQPNLP-----QLTVSIGVAQHQSGEDTDSLFKRMDEALYRAKA 422

Query: 250 SGRNRV 255
           SGRNRV
Sbjct: 423 SGRNRV 428


>gi|107028918|ref|YP_626013.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
 gi|116689924|ref|YP_835547.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
 gi|105898082|gb|ABF81040.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
 gi|116648013|gb|ABK08654.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
          Length = 466

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 22/233 (9%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI------LK 91
           ++A  IF    FL        YG+   L    S   I  +   L+  +S S+      L+
Sbjct: 240 WLAHAIFAGGFFLLS------YGVVQALQTTRSFSAI-YSQEDLMSRLSESMARTESALQ 292

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL  +  ++  ++  D ++G  N   FI+ +               ++  D+D FK IND
Sbjct: 293 ELRRTNQKLEYMAATDPMTGASNRRQFIAQVEREIVRAERDGTPFCLLALDLDNFKNIND 352

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH +GD+V+  +  Q +        + R+GGEEF A       + A + A  +R  I 
Sbjct: 353 AYGHQIGDEVLRGVVRQCLEAIRPAGALARVGGEEFMALLPEMPLEGARMTAERVRSSIS 412

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
           +S   +     + +T+S G+A+       +  ++   D+ LY AK+ GRNRVV
Sbjct: 413 SSPFGL-DFKRVQVTVSVGVAQYGVDGSTVDALLRVVDERLYQAKREGRNRVV 464


>gi|325291024|ref|YP_004267205.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966425|gb|ADY57204.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 723

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 87/180 (48%), Gaps = 10/180 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            +  L +  ++++ ++  D L+ L N   F   L          NEK++++F DID FK+
Sbjct: 274 DINNLKVHEDQLAYIAYHDSLTSLPNRKLFFDRLDITLKKAKRLNEKVAVLFLDIDNFKK 333

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLR 200
           IND+ GH  GD+++   + ++         + RLGG+EF  +   +S  +E   L   ++
Sbjct: 334 INDSMGHDCGDEILRQSAHRISSNIRDYDTLARLGGDEFVLSFQNASCNEEILALTKRVK 393

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                    +     +H++ S GI+    H      ++  AD A+Y AK+SG+N V  FS
Sbjct: 394 DCF-LKPFVLGKNSVVHLSCSIGISVFPDHGVTKEELLKYADMAMYKAKESGKNTVRIFS 452


>gi|320106497|ref|YP_004182087.1| diguanylate cyclase [Terriglobus saanensis SP1PR4]
 gi|319925018|gb|ADV82093.1| diguanylate cyclase [Terriglobus saanensis SP1PR4]
          Length = 484

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 100/239 (41%), Gaps = 15/239 (6%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
              I  S+F+   + +       I     + L  ++   L++ + +I  S L      S 
Sbjct: 231 LIRIGSSVFLPVSVLL---LCLAIASAGHFALIPVICSMLAIFLFAIRSSYLQFRYQKS- 286

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQI 142
              L  + N +  +S  D L+G+ N   F               + L+++  DID+FK  
Sbjct: 287 QSRLIDARNVMEMISHTDPLTGVHNRRWFDLALLREWKRAQRGKQPLTLLLIDIDHFKAF 346

Query: 143 NDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND  GH  GD  +  ++ +L   +      + R GGEEF      +  + A  +A ++R+
Sbjct: 347 NDTLGHLQGDDCLTAVAQKLMSNLQRDGDSIVRYGGEEFVVILPQTDIRGALTVAENMRQ 406

Query: 202 IIENSQINISSGPSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRVVC 257
            I          PS  +T+S G A +     ++    ++  AD ALY AK  GRNRV C
Sbjct: 407 AIARMAYPHPGAPSGIVTVSVGAATQSDYSMEDTSEELLIAADTALYRAKNGGRNRVEC 465


>gi|302036588|ref|YP_003796910.1| response regulator [Candidatus Nitrospira defluvii]
 gi|300604652|emb|CBK40984.1| Response regulator, contains GGDEF domain [Candidatus Nitrospira
           defluvii]
          Length = 334

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 8/174 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
           ++++L  +   + +LS +D L+G+ N   F              +  LS++  DIDYFK 
Sbjct: 145 VMRQLQEANQMLLRLSCLDGLTGITNRRQFDDFLDQEWRRAARESTPLSLIMLDIDYFKT 204

Query: 142 INDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND+ GH  GD+ +  ++  +   V      V R GG+EF     G++   AA +A+ LR
Sbjct: 205 YNDSHGHQAGDECLRQVAQLISSHVNRPGDLVARYGGDEFVIVLPGTTVDGAAQVADTLR 264

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + +  +++   +G  + I++             + +I  ADQALY AK+ GRNR
Sbjct: 265 RKVCEAEMKHPNGDPVTISLGFACTVPSRVAAPTDLIRAADQALYQAKQEGRNR 318


>gi|299530973|ref|ZP_07044386.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298720930|gb|EFI61874.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 253

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 10/172 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+GL N   F S +    ++++       ++  DID+FKQIND  GH  GD V+
Sbjct: 42  LSLRDPLTGLANRRHFRSVIEREIDRVARSGETALLLMLDIDHFKQINDEHGHIAGDMVL 101

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L  +      + R GGEEFA         +   +A  LR+ IE++ I +SSG S
Sbjct: 102 QSVAQTLSEIIRPMDTLARFGGEEFAIVLPVCPAHQGRAVAERLRQAIESNSIALSSGQS 161

Query: 216 IHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           + IT+S G   A++  +        RAD+ LY+AK +GRN V    D  ++T
Sbjct: 162 LKITVSIGGVYAQQWIRSTAQLWTERADRQLYLAKSAGRNCVCV-EDPPDST 212


>gi|152987228|ref|YP_001350237.1| hypothetical protein PSPA7_4901 [Pseudomonas aeruginosa PA7]
 gi|150962386|gb|ABR84411.1| membrane protein, putative [Pseudomonas aeruginosa PA7]
          Length = 375

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 66/281 (23%), Positives = 119/281 (42%), Gaps = 40/281 (14%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYF--SIFFSIF-IATVIFIANIFLFYIGLTPFYGLEYI 64
           +L+ +L H  +L      TFM+++  ++ F +F +   +F     L +I  +  + +E +
Sbjct: 93  WLTYFLYHVDSLRG----TFMVFYVLALLFGVFQLPPRVFARCAALAFIAFSGIHLVEVL 148

Query: 65  ----------LVENLSLVIISITISLLLGYISGSILKELFISY-------------NRIS 101
                      ++ L+L I+ + +SL   Y+     +     Y              ++ 
Sbjct: 149 QRRLELPGRAALQVLALFIVLVWLSLFASYVQAMRQRMRQRRYALQAHQDTLRGMMRQLE 208

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            L   D L+GL N   F+   G        N +  +   D+D+FK+IND  GH  GD+V+
Sbjct: 209 DLVATDELTGLFNRRHFMRMAGRALEDLLPNRQHGLALIDLDHFKRINDRHGHAAGDRVL 268

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +            + R GGEEF      +  ++       LR   E ++     G +
Sbjct: 269 QTFAAVARSCLRDGDILARYGGEEFVLLLPHADAEQLERCCERLRLAFEQAE---PVGVA 325

Query: 216 IHI-TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + + ++S G+      + +   + RADQALY AK+ GRNR 
Sbjct: 326 VEVLSLSVGMTLLYADDDLDEALQRADQALYRAKRGGRNRC 366


>gi|288962778|ref|YP_003453072.1| diguanylate cyclase/phosphodiesterase [Azospirillum sp. B510]
 gi|288915044|dbj|BAI76528.1| diguanylate cyclase/phosphodiesterase [Azospirillum sp. B510]
          Length = 819

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 11/180 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
              + E   +   I  L+  D L+ L N       +            K++++F D+D F
Sbjct: 369 AEDIGEKRRAEQHIQYLAHFDALTSLPNRVLLYDRIAQALREARRDGTKVAVLFIDLDRF 428

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
           K IND+ GH  GD+V+  ++ +L         VGRLGG+EF       +E  +AA +A  
Sbjct: 429 KIINDSLGHSFGDEVLRSVARRLQAGLRDSDTVGRLGGDEFLIVLRRVTEPADAARVAEK 488

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           +   + +       G S  +T S GI+      +    +I  AD A+Y AK+ GRN    
Sbjct: 489 VVAHLAS--PFPVGGQSFVVTPSIGISLYPDDADDAEELIRCADIAMYHAKEQGRNGFRF 546


>gi|283852505|ref|ZP_06369773.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio sp. FW1012B]
 gi|283572113|gb|EFC20105.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio sp. FW1012B]
          Length = 433

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 82/179 (45%), Gaps = 11/179 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDI 136
            ++ + + +L +    +  L+ +D L+  +N                 Y   LS+V  DI
Sbjct: 248 LLTLADVTDLELERRELLDLANLDPLTRAMNRRKLTEVLGDEAARAARYRSPLSVVLLDI 307

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK IND  GH VGD V+  L+ +L         + R GGEEF   A G + Q A  LA
Sbjct: 308 DRFKAINDTHGHAVGDAVLVELAARLRAGLRQVDRLARYGGEEFVVVAPGINGQGAYDLA 367

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             LR  + + +          +T S G+A     +    ++ RAD+ALY AK  GRN+V
Sbjct: 368 ERLRLAVGDKEFAGVG----RVTASFGVAGHVPGQEPEAMLRRADEALYRAKNGGRNKV 422


>gi|241206372|ref|YP_002977468.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860262|gb|ACS57929.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 385

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 57/193 (29%), Positives = 99/193 (51%), Gaps = 4/193 (2%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-EK 128
           S + +S    ++L  +   +L     S N++++L+  D L+G LN       L +   + 
Sbjct: 190 SWMAVSAVAFIMLRSM-AMVLMAAERSRNQLTELAHHDPLTGALNRGGLAQHLPALGFQP 248

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +S++  DID+FKQ+ND  GH  GD ++   +     +  +   + R GG+EF A    +S
Sbjct: 249 VSLLIIDIDHFKQLNDRHGHAAGDDILRLFASVSRSIMRSDDLLARQGGDEFLAVLKNAS 308

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVA 247
            Q+A I+A  +R     + +      +I  T+S G+A R         ++ +AD+ALY +
Sbjct: 309 RQDAVIIAERIRLAFAAAVLQRPD-LAIFPTLSIGVAARAESGGDFERLMQKADEALYRS 367

Query: 248 KKSGRNRVVCFSD 260
           K+ GRNRV  FS+
Sbjct: 368 KREGRNRVEAFSE 380


>gi|186473968|ref|YP_001861310.1| diguanylate cyclase [Burkholderia phymatum STM815]
 gi|184196300|gb|ACC74264.1| diguanylate cyclase [Burkholderia phymatum STM815]
          Length = 504

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 20/218 (9%)

Query: 60  GLEYILVENLSLVIISITISLLLG-------YISGSILKELFISYNRISQLSRIDCLSGL 112
            L+ +L    +L  I  T +  +        ++    L++  ++ +R+++L++ D L+GL
Sbjct: 281 ALDDVLASWKTLSWIVGTSACAISFAFCAVVWLLAFALRDRALAEDRLTELTQTDSLTGL 340

Query: 113 LNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VV 164
            N  A    L +  E+L       S+++ D D+FKQ ND +GH  GDK +  L+D +   
Sbjct: 341 KNRRALDEVLEAEWERLQRTASCLSVLYVDADHFKQYNDKYGHAAGDKALKHLADCIAQR 400

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS---QINISSGPSIHITIS 221
                    R GGEEF      +    AA +A  +R+ +E S   +    +      T+S
Sbjct: 401 ACRRSDCAARYGGEEFVVVLPDTDAANAARVAEGIREALERSWHARHEAGTAELHPFTVS 460

Query: 222 AGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
            G A         +  +   AD ALY AK +GRN V  
Sbjct: 461 VGCATGRRGCPATLDELTKAADLALYEAKNAGRNCVRA 498


>gi|83311376|ref|YP_421640.1| signal transduction protein [Magnetospirillum magneticum AMB-1]
 gi|82946217|dbj|BAE51081.1| Predicted signal transduction protein containing a membrane domain
           [Magnetospirillum magneticum AMB-1]
          Length = 831

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 49/209 (23%), Positives = 90/209 (43%), Gaps = 12/209 (5%)

Query: 64  ILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           + V   S+V +      +  +I S   + E   +   I +L+  D L+ L N   F   L
Sbjct: 357 VFVAWESIVAVYDEAGAIRYFIGSFRDITEQVEAQRHILRLAHYDVLTDLPNRVLFQDRL 416

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                    ++ + +++F D+D FK++ND  GH  GD ++  ++ +L         + RL
Sbjct: 417 ERAVVHALRHDRQAALLFLDLDGFKKVNDTMGHRAGDDLLKEVAVRLRGCVRMTDTIARL 476

Query: 176 GGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF       S   +A+++A+ +   +         G  + I  S GI+         
Sbjct: 477 GGDEFTVILDEISAANDASMVADKILASLHAPIF--IDGRDVFIGTSIGISLFPIDGTSG 534

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIE 262
             ++  AD A+Y AK +G+ R   +S   
Sbjct: 535 DELLKHADTAMYQAKAAGKGRFNFYSAEM 563


>gi|109896772|ref|YP_660027.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109699053|gb|ABG38973.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
          Length = 378

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 119/257 (46%), Gaps = 22/257 (8%)

Query: 20  ESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS 79
           +   P  F++   +   +    +IF+  +      +     L+ + +E  S  I++   +
Sbjct: 116 QGHGPVPFIMGMMVIAMLVQGHLIFLYALLFACWLVVSAGMLKMLPLEEASSPILTCFTT 175

Query: 80  LLLGYISGSI-----------LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG----- 123
           +L+ +    +           L+EL    + + +L+  D L+ L N   F + L      
Sbjct: 176 MLIAFFIARLAERTRVDQFEMLQELHEKNSLLGELAVQDPLTKLNNRRYFSNKLEVETAR 235

Query: 124 --SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              Y   LS++  D+D FK+INDN GH VGD+V+  +S  +         V R GG+EF 
Sbjct: 236 SLRYQHPLSLLVVDVDDFKKINDNDGHLVGDEVLIEISQLIAQQLRAGDVVCRYGGDEFV 295

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
              + +  +++  +A+ + + ++ ++       S  +T+S G A+    +P+   + +AD
Sbjct: 296 ILLVEACAEQSREIADRICQSVDRTKF---GRASHKVTVSIGYAQYV-GQPLGDFMQQAD 351

Query: 242 QALYVAKKSGRNRVVCF 258
           + +Y +KK G+N+V  F
Sbjct: 352 KMMYTSKKRGKNQVAFF 368


>gi|296272790|ref|YP_003655421.1| chase2 sensor-containing diguanylate cyclase [Arcobacter
           nitrofigilis DSM 7299]
 gi|296096964|gb|ADG92914.1| diguanylate cyclase with Chase2 sensor [Arcobacter nitrofigilis DSM
           7299]
          Length = 589

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 69/253 (27%), Positives = 112/253 (44%), Gaps = 30/253 (11%)

Query: 29  IYFSIFFS---------IFIATVI-FIANIFLFYIGLTPFYGLEYILVENLSLVIISITI 78
           + FS++FS         +F  T++ F+  I   +I L  FY     L  NL   I++I  
Sbjct: 342 VLFSLYFSSRKNIYKKGVFTVTLLAFVMTIVYGFISLKFFY-----LQSNLFFSILTIIF 396

Query: 79  SLLLGYISGS-----ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------ 127
           S++   I+         + L     ++   +  D L+GLLN   F      Y E      
Sbjct: 397 SIVFTVINHQSSLSKYNQRLIKETKKLYNEANCDSLTGLLNRRGFDEQYIKYKEITQLKS 456

Query: 128 --KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
                +   D+D+FK++ND +GH +GD V+   +  L           R GGEEF     
Sbjct: 457 FQSTCLAVMDLDFFKRVNDTYGHDIGDLVLQKFAKLLKEYSRDIDVPARWGGEEFVILLR 516

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQAL 244
            ++  E+ I+ N +R++     I    G  + IT+S G+       + I + + +AD  L
Sbjct: 517 NTTIDESIIILNRIRELCMEMDIKTPQGI-LKITVSTGVTVIEDFSKTIDSYVKKADIGL 575

Query: 245 YVAKKSGRNRVVC 257
           Y AK++GRNRV  
Sbjct: 576 YQAKEAGRNRVCI 588


>gi|294011060|ref|YP_003544520.1| putative GAF sensor diguanylate cyclase [Sphingobium japonicum
           UT26S]
 gi|292674390|dbj|BAI95908.1| putative GAF sensor diguanylate cyclase [Sphingobium japonicum
           UT26S]
          Length = 331

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 10/176 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           L  L +    + +++  D L+G L   AF       I+    +   +S++ FDID+FK+I
Sbjct: 149 LAALVVEQLELRRIAERDHLTGALTRRAFLIEMNRAIALFERHQRPVSLLLFDIDHFKRI 208

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GHP GD+VI  ++     +      +GRLGGEEF      ++E++AA  A    + 
Sbjct: 209 NDTHGHPAGDQVIRGIARLCTSLQRPSDSLGRLGGEEFGILLPETAEEDAASAAQRFCEA 268

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVC 257
           I  ++I     P + +T+S G+AE     P   + +  AD ALY AK+SGRNRV  
Sbjct: 269 IAAAEIP--GPPPLCVTVSFGVAELRGDWPTGESWLAVADMALYEAKRSGRNRVAV 322


>gi|221210903|ref|ZP_03583883.1| diguanylate cyclase [Burkholderia multivorans CGD1]
 gi|221169859|gb|EEE02326.1| diguanylate cyclase [Burkholderia multivorans CGD1]
          Length = 508

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 62/197 (31%), Positives = 94/197 (47%), Gaps = 15/197 (7%)

Query: 74  ISITISLLLGYIS------GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
           I + +SL  G+++         L+   ++  ++ +L+R D L+GL N  AF ++L     
Sbjct: 302 IIVLMSLFTGFVAWGSLLLSRELRRRQVAEAKLYRLARTDSLTGLDNRGAFDAALAQEAR 361

Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEE 179
                   LS++F D+D+FK  ND +GH  GD V+  ++             + R GGEE
Sbjct: 362 RAARSGRPLSVLFVDVDHFKAFNDYYGHLAGDDVLRRVAQCASGCLRRATDHIARYGGEE 421

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIY 238
           F      +  Q AA +A  +R+ I    I     P  H+T S G A   H     +T++ 
Sbjct: 422 FVVTLPDTDAQGAATVAEGIRRAIAALGIEHVKSPYGHVTASIGTATDAHGRMDAATLLQ 481

Query: 239 RADQALYVAKKSGRNRV 255
            AD ALY AK  GRNRV
Sbjct: 482 LADDALYRAKYGGRNRV 498


>gi|123443999|ref|YP_001007969.1| cell signalling regulator [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090960|emb|CAL13842.1| Possible regulator involved in cell signalling [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 519

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 7/162 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++   ++ D ++GL N     ++L       +  S++  DID+FK+IND++GH VGD+VI
Sbjct: 361 KLRFEAQTDPMTGLYNRRGLATTLEPIAQLGQHFSVIALDIDHFKEINDSYGHDVGDEVI 420

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L+ Q+         + R GGEEF      +    A  +A  LR  +E   +       
Sbjct: 421 KQLAIQIRESSRDSDILCRSGGEEFLMLLPSTVPDVATPVAKRLRHNVEMMVMANIR--- 477

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             ITIS G+A    +      + RAD+ALY AK+ GRNRV  
Sbjct: 478 -PITISLGVAFWNGEGTPEDALKRADEALYRAKQQGRNRVEV 518


>gi|187920674|ref|YP_001889706.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
 gi|187719112|gb|ACD20335.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
          Length = 371

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 15/175 (8%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFG 147
               R+ QL   D L+GL N   F   +         Y   ++ +F DID FK+IND +G
Sbjct: 185 AHRERLKQLGMTDSLTGLANRRYFDERMREEIMRACRYGVPVACLFIDIDSFKRINDTYG 244

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+ +A ++  +         V R GGEEFAA   G    +A  +A  +R  +E   
Sbjct: 245 HQTGDRALAAVAACVRQQVRLGDTVARYGGEEFAALLQG-DRADALTVAERVRLAVERLA 303

Query: 208 INISSGPSIHITISAGIAERCHKEPIST-------IIYRADQALYVAKKSGRNRV 255
           +    G  I +T+S G+A R      +        ++  AD+A+Y AK++GRNR+
Sbjct: 304 LQDDHGERIVLTVSIGVAARTISGTPAEAAKLGGAMMEEADRAMYQAKRNGRNRI 358


>gi|71735762|ref|YP_273743.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556315|gb|AAZ35526.1| GGDEF domain protein [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 323

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 10/225 (4%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
              + +    L P   L   + +  + + + +   + +G++S  +  +L+   N + ++S
Sbjct: 90  ALGVLISLALLNPAVNLHGNMAQIYACLPVLVIYPIFIGWMSHQVTLKLWEHRNILRKIS 149

Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           R D L+GLLNH A+   L        + +++  I   DID+FK IND +GH +GD V+  
Sbjct: 150 RTDSLTGLLNHGAWKDLLDLEYVKSQNQHQQCVIALIDIDHFKVINDTYGHLMGDTVLQN 209

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +S+ L+        +GR GG+EF      +   +A  +    R  I+    ++     + 
Sbjct: 210 ISEALMENLRDSDLIGRCGGDEFCVILPDTHLFQAREILERTRLAIDEMTYSLQ--RDLK 267

Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +++S GIA    +    S+ ++ AD+ALY+AK +GRN V    D+
Sbjct: 268 VSLSIGIAAYSPELPDASSWLHEADKALYLAKSTGRNCVASAQDM 312


>gi|298291182|ref|YP_003693121.1| diguanylate cyclase [Starkeya novella DSM 506]
 gi|296927693|gb|ADH88502.1| diguanylate cyclase [Starkeya novella DSM 506]
          Length = 726

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 107/230 (46%), Gaps = 20/230 (8%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE--LFISYNRIS 101
           FIA      I L P   +       + + +++  ++L+        + E     + +++ 
Sbjct: 489 FIAGTDWSLIILKPTRQIFATRFVGIVITLLTAIVALMYLLGKERWMHEAAQRETQSKLQ 548

Query: 102 QLSR-------IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
            L+R        D L+GL N           ++        LS+V FDID FK+IND+FG
Sbjct: 549 GLARDMSIKAITDPLTGLYNRLRLKDVLPREMARADRTGSALSVVMFDIDRFKRINDSFG 608

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GDKV+  LS            + R GGEEF      ++  EA I+A  LR+ I N +
Sbjct: 609 HATGDKVLVALSRVAAGSLRATDHLVRWGGEEFLVVLPDANAAEARIVAEKLRQAIANHR 668

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + +      IT+S G+A+    E ++ +I RAD+ LY AK +GRNRV  
Sbjct: 669 FDEAG----RITVSFGVAQYAPGEVMADLIARADRTLYQAKANGRNRVEV 714


>gi|254507955|ref|ZP_05120083.1| ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219549063|gb|EED26060.1| ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 323

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 10/249 (4%)

Query: 21  SFSPHTFMIYFSIFFSIFIA---TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISIT 77
           S+   T+   F + F + +      +     FL  +    +  +E   V++  L I    
Sbjct: 71  SYGLFTWACLFPVLFYLILGRRKGTLATGAGFLTVLMTVSYKIIECSFVDSAHLAINFAL 130

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIV 132
               +   S  +  +   S   + QL+  D L+G+ N  A + +   Y+       LS++
Sbjct: 131 TFCCIWLTSHILEVKRKTSEASLGQLASRDSLTGVYNRHALVHNFNRYHNESAKVPLSLL 190

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+DYFKQ+ND +GH VGDKV+   +  L         V R+GGEEF  A   S+ Q A
Sbjct: 191 ILDLDYFKQVNDQYGHDVGDKVLVETAALL-DALCDEHLVYRIGGEEFCIALHNSNLQHA 249

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
              A  +R+ IE    + +  P I +T+S G+ E  H + + +++  AD+ LY AKK+GR
Sbjct: 250 KYKAELIRQAIEQYSFSGAEAP-IKLTVSIGVYECHHFDSLESVLKEADKELYKAKKNGR 308

Query: 253 NRVVCFSDI 261
           N+V+   ++
Sbjct: 309 NQVMVSQEV 317


>gi|217077028|ref|YP_002334744.1| diguanylate cyclase [Thermosipho africanus TCF52B]
 gi|217036881|gb|ACJ75403.1| diguanylate cyclase [Thermosipho africanus TCF52B]
          Length = 167

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 77/169 (45%), Gaps = 11/169 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNF 146
                ++  LS  D L+ L N       +         Y    S++  DID FK+IND +
Sbjct: 1   MELNKKLKYLSERDQLTDLYNRHKMNEEIRKHYYNFKRYGRPFSLLMVDIDKFKKINDTY 60

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+V+  L+  LV          R  GEEF      +  ++A  +A  +RK IE  
Sbjct: 61  GHMVGDEVLKKLAKILVKNIRKTDIASRWVGEEFLILLSETDLEQAIEVAEKIRKTIEKE 120

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                    I IT+S G+    + E I  ++   D+ LY AK+SGRNRV
Sbjct: 121 SFP----KDIRITVSIGVDSVENHEHIKDLLILVDEKLYKAKESGRNRV 165


>gi|254000138|ref|YP_003052201.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. SIP3-4]
 gi|253986817|gb|ACT51674.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. SIP3-4]
          Length = 751

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 11/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + E     N+++ L+  D L+GL N       L           E ++++F D+D+FK 
Sbjct: 307 DVSEARNMANKMTYLAEHDYLTGLPNRLLLNDRLNQALTIARRDQEFIALMFLDLDHFKN 366

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           IND+ GH VGD+++  ++ +L         + R GG+EF       ++    A +A  L 
Sbjct: 367 INDSLGHEVGDQLLKMVARRLESCLRASDTISRQGGDEFMILLPELTNYFSPAEVAEKL- 425

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTII-YRADQALYVAKKSGRNRVVCFS 259
            +   +         I ++ S GIA          ++   AD A+Y AK  GRN    F+
Sbjct: 426 -LAAATVPYEIGSHEITVSASIGIAVFPDDGENGELLTKNADAAMYHAKSLGRNNYQFFT 484

Query: 260 DIENN 264
              N 
Sbjct: 485 RAMNE 489


>gi|288940775|ref|YP_003443015.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Allochromatium vinosum DSM 180]
 gi|288896147|gb|ADC61983.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Allochromatium vinosum DSM 180]
          Length = 1124

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
            + E  ++   +   +  D L+GL N +     L           + ++++F D+D FK 
Sbjct: 521 DVTERRLAEEELVWHAIHDPLTGLPNRTMIHERLERALRRSKQQGQSVALLFIDLDGFKL 580

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           +ND+ GH  GD+++  ++ +LV        +GRLGG+EF        S    A LA+ L 
Sbjct: 581 VNDSHGHQAGDELLKTVAQRLVDHVRPGDTIGRLGGDEFVVLCDHVESPAAVANLADRLN 640

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++   +    SG  +  + S G+A           ++  AD A+Y AK+ GR+    FS
Sbjct: 641 DLLR--EPVTLSGRRLFASASIGLAIGHGTTHSADDLLRNADAAMYQAKEQGRDGWRFFS 698

Query: 260 DIENNTC 266
           +  +   
Sbjct: 699 EEIHEQA 705


>gi|217970398|ref|YP_002355632.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
 gi|217507725|gb|ACK54736.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
          Length = 639

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 16/180 (8%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E   +   I  L+ +D L+ L N    +  L         +    +++F DID+FK+
Sbjct: 455 DITERKAAEEAIRNLAFVDTLTQLPNRRFLLDRLRQGLANARRHGRHGALLFIDIDHFKR 514

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE------QEAAIL 195
           +ND +GH  GD+++  ++ +L  V      V RLGG+EF        +      ++AA++
Sbjct: 515 VNDTYGHEAGDQLLCEIAARLRQVVREGDTVARLGGDEFVVMLEDLGDATAEAGEKAALI 574

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
           A ++   +  ++         H T S GIA     E     ++ RAD+A+Y AK  GRNR
Sbjct: 575 AGNILAAL--NEPYAIGAVRHHSTPSIGIACFDGGEQRAEELLRRADEAMYRAKAGGRNR 632


>gi|170019712|ref|YP_001724666.1| diguanylate cyclase [Escherichia coli ATCC 8739]
 gi|169754640|gb|ACA77339.1| diguanylate cyclase [Escherichia coli ATCC 8739]
          Length = 564

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 MCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 542 LADRRLYLAKQAGRNRVCA 560


>gi|56460549|ref|YP_155830.1| signal protein [Idiomarina loihiensis L2TR]
 gi|56179559|gb|AAV82281.1| Signaling protein with a ligand-binding sensor domain and GGDEF
           domain [Idiomarina loihiensis L2TR]
          Length = 970

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 62/216 (28%), Positives = 101/216 (46%), Gaps = 19/216 (8%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQL-----------SRI 106
           F    +  ++    +I S+  +LL+  I  + L +   +  ++ Q+           +R 
Sbjct: 752 FRQSAHFWMQPWFWIIASLITALLVLVIVRARLNQYNRTRLQLEQMVKEKTADLETMARQ 811

Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N  AF   L     +       LS+   D+DYFK++ND + H +GDKV+  L+
Sbjct: 812 DPLTNLGNRRAFDERLQHELNRCRRDGTYLSLAIIDVDYFKEVNDRYLHTIGDKVLIRLA 871

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L        +V R GGEEFA     S  + A   +  +R+ I  +  +      + IT
Sbjct: 872 EILNDEIRDIDYVARWGGEEFAVLITNSELEIAREASERMRERIATTLFDDLV-EDMKIT 930

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S G+A        S+++  AD+ALY AK  GRNRV
Sbjct: 931 VSIGVASSYDYADHSSLLVAADKALYQAKSEGRNRV 966


>gi|307823159|ref|ZP_07653389.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307735934|gb|EFO06781.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 709

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 17/199 (8%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSY 125
           I++IT++L+        + E   S   I +L+  D L+ L N       +          
Sbjct: 262 ILNITVTLI-------DITEHVKSQEEIHRLAHYDSLTQLPNRFLIHERIDQAIHSSRRE 314

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           N+  +++F D+D FK +ND+ GH  GD ++  +SD+L          GRLGG+EF     
Sbjct: 315 NQSFALLFLDLDNFKIVNDSLGHHRGDLLLQQVSDRLKDCLRKGDMAGRLGGDEFVVLLP 374

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQAL 244
            +    AA +++ + + I N+  ++     ++I  S GI+   +      T+   AD A+
Sbjct: 375 NTGADGAAHVSSKIIEAI-NAPFDVEE-YLLNIGTSIGISIYPNDGLESDTLTRHADIAM 432

Query: 245 YVAKKSGRNRVVCFSDIEN 263
           Y AK SG  R   F    N
Sbjct: 433 YHAKASGGGRNCFFDSEMN 451


>gi|302878855|ref|YP_003847419.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
 gi|302581644|gb|ADL55655.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
          Length = 925

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 12/192 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           S + L E  ++  +I  L+  D L+GL N    +  L           +  +++F D+D 
Sbjct: 470 SYTDLTERKMAEEKIISLAFYDTLTGLPNRRLLLDRLNYALASGLRTGKNGALLFIDLDK 529

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ--EAAILA 196
           FK +ND  GH +GD ++  ++ +L         V R+GG+EF       + +  EAA   
Sbjct: 530 FKTLNDTLGHDIGDLLLKQVAHRLKACVREIDTVARIGGDEFVVMLEDLNIESVEAAAQT 589

Query: 197 NDL-RKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
             +  KI+   ++         H ++S GI+    + +     + +AD A+Y AKKSGRN
Sbjct: 590 EVIGEKILAALRMPYQLLTNEFHSSVSIGISLFSNNGQSQDEPLKQADIAMYQAKKSGRN 649

Query: 254 RVVCFSDIENNT 265
           ++  F     +T
Sbjct: 650 KLRFFDQRMQDT 661


>gi|220934318|ref|YP_002513217.1| signal transduction protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995628|gb|ACL72230.1| signal transduction protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 571

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 12/209 (5%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           +YIL +NLS +  +I   L        + ++   +   I+ L+  D L+GL+N   F + 
Sbjct: 108 DYILKDNLSRLAPAIDREL----RDHEVRRQNRQAQEAINHLALHDSLTGLINRHGFETR 163

Query: 122 L------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
           L             ++++ D+D FK +ND  GH  GD ++  L+  L +       + RL
Sbjct: 164 LKEALAKARRQRPSALLYIDLDQFKLVNDTCGHQAGDDLLRQLASLLQIPVREHDTLARL 223

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIS 234
           GG+EF       + ++A  +A  +  I+ + +       +  I  S G+      +  +S
Sbjct: 224 GGDEFGVLLDECTLEQAEQVARRMLSIVNDFRYTWGE-HNFRIGASIGLTLLDDPDLSLS 282

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            ++  AD A Y AK  GRNRV  F + + 
Sbjct: 283 DVMRHADMACYAAKDKGRNRVHLFREDDR 311


>gi|190574226|ref|YP_001972071.1| putative transmembrane GGDEF EAL domain signalling protein
           [Stenotrophomonas maltophilia K279a]
 gi|190012148|emb|CAQ45771.1| putative transmembrane GGDEF EAL domain signalling protein
           [Stenotrophomonas maltophilia K279a]
          Length = 711

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 10/194 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVF 133
           LL   +  +   L  +   ++Q +  D L+ L N       +            + +++F
Sbjct: 246 LLRLRNSMLSTSLTDAQQELTQAALHDPLTRLPNRLLLQRRIVQALAEAEQGGSRFAVMF 305

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FKQ+ND +GH  GD ++  ++++   +      + RLGG+EF        +++  
Sbjct: 306 MDLDGFKQVNDAYGHQAGDALLVAVAERTRQLLRPHDMLARLGGDEFVLVVRIEHDEDLP 365

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGR 252
            LA  + + + +  +   +   + +T S G+A    H      ++  AD A+Y AK+SGR
Sbjct: 366 TLARRILQAVGSGPLLPDN--ELQVTASIGVAICPDHAASERQLMAFADAAMYQAKESGR 423

Query: 253 NRVVCFSDIENNTC 266
           N  V F+D  NN+ 
Sbjct: 424 NAFVLFADWMNNSA 437


>gi|89093276|ref|ZP_01166226.1| serine/threonine kinase with two-component sensor domain
            [Oceanospirillum sp. MED92]
 gi|89082572|gb|EAR61794.1| serine/threonine kinase with two-component sensor domain
            [Oceanospirillum sp. MED92]
          Length = 1723

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 83/174 (47%), Gaps = 10/174 (5%)

Query: 92   ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
            +L      + +L   D L+GL N   F +        L      LSIV FD+DYFK  ND
Sbjct: 1540 QLEELNEELKKLVDSDGLTGLANRRCFDTYLARTWLRLRREQNPLSIVMFDVDYFKTFND 1599

Query: 145  NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             +GH  GD  +  L+  +   +      V R GGEEF      + E+ A  +A  +   +
Sbjct: 1600 TYGHQSGDDCLVMLAKTVREQIQRPADLVARYGGEEFIVVLPDTDEEGAMAVAGQICVAV 1659

Query: 204  ENSQINISSGPSI-HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             + +I   +     H+TIS G+A  C   +   ++I  ADQALY AKK GRN+V
Sbjct: 1660 ASLKIPHCNSVVADHVTISVGVATTCPDTQGPDSLIELADQALYEAKKQGRNQV 1713


>gi|330886287|gb|EGH20188.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 712

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 95/197 (48%), Gaps = 14/197 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           ++++  +  S++++L   Y ++ + +  D L+GLLN      ++          ++ L +
Sbjct: 254 AMVMTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVEGMLLRKEQTDKYLVV 310

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQ 190
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF     G    +
Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           +AA +A  L + +   +     G  I +  S GIA        +  ++  AD A+Y AK+
Sbjct: 371 QAAKIAEKLIERVSGRRQ--VDGVDITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKR 428

Query: 250 SGRNRVVCFSDIENNTC 266
           +GR +   +    N   
Sbjct: 429 AGRQQYRFYDQNMNGRA 445


>gi|330447369|ref|ZP_08311018.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491560|dbj|GAA05515.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 675

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 7/181 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFG 147
           +E+      I QL ++D L+GLLN   F   L    +    + +++ DID FK IND+ G
Sbjct: 240 QEIKRQQGHIEQLVQMDPLTGLLNRHGFTRQLEQLMKAEVPVVMLYIDIDNFKNINDSLG 299

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206
           H +GDKV+  ++ +L  +      +G L G+EFA        E+   I++  +  ++ N 
Sbjct: 300 HHIGDKVLQEIAQRLRRLLPETAIIGYLSGDEFAILLPNPEHERTGEIISEQIIALV-NQ 358

Query: 207 QINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
              +      H+  S G +    H      ++  AD A+Y AK  GRNR+V F+D  +  
Sbjct: 359 PFELRHFRK-HLACSIGMVTSPGHGSDARMMLQNADTAMYEAKHRGRNRLVEFNDSMSKE 417

Query: 266 C 266
            
Sbjct: 418 A 418


>gi|319794454|ref|YP_004156094.1| diguanylate cyclase with gaf sensor [Variovorax paradoxus EPS]
 gi|315596917|gb|ADU37983.1| diguanylate cyclase with GAF sensor [Variovorax paradoxus EPS]
          Length = 356

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 58/189 (30%), Positives = 89/189 (47%), Gaps = 16/189 (8%)

Query: 82  LGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132
           L  ++  ++ +L + +    +   S  D L+ L N  +    L             LS++
Sbjct: 170 LQSLARQVVAQLELRHAMAGLELESMTDPLTSLWNRRSLDRRLHAAWNLHVREAAPLSLL 229

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK+IND  GHP GD+V+   +  +    G      R GGEEF     G     A
Sbjct: 230 MIDLDHFKRINDAHGHPTGDRVLVQAAAIIRDQIGHDGLAARFGGEEFCVVLPGMDAGTA 289

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKS 250
              A  LR+ +E++     S P + +T S G+A     E    + ++ RAD+ALYVAK+ 
Sbjct: 290 QQRAEQLRRALEDA-----SWPDVKVTASIGVATATADEDGSPNVMLTRADRALYVAKRD 344

Query: 251 GRNRVVCFS 259
           GRNRV  F 
Sbjct: 345 GRNRVRHFE 353


>gi|315186602|gb|EFU20361.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Spirochaeta thermophila DSM 6578]
          Length = 1046

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 10/184 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           + +      R+  L+  D L+ L N       L           +K+ ++F D+D FKQ+
Sbjct: 601 ISKQKELEERLRYLAYHDALTDLPNRFLLEDRLERECARARREGKKVGLIFVDLDNFKQV 660

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRK 201
           ND FGH  GD  +  ++  L         V R+ G+EF     G +++  A  +   + +
Sbjct: 661 NDTFGHRTGDLYLVHVAHLLREACREVDTVARIAGDEFVIMLPGLAQKAFALSVLERIFR 720

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +        +  ++ +++SAG+A         S I+ RAD ALY AK+ G+N+   F  
Sbjct: 721 GLREQPFQHEN-TTLEVSLSAGLAFFPDDGGSASEILSRADIALYRAKRQGKNQYAIFQR 779

Query: 261 IENN 264
            +  
Sbjct: 780 EDQK 783


>gi|313683571|ref|YP_004061309.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
 gi|313156431|gb|ADR35109.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
          Length = 974

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 51/189 (26%), Positives = 89/189 (47%), Gaps = 10/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
              + E      ++  L+  D L+GL N     + L            +L+++ FD+D F
Sbjct: 534 ARDISERKKHEEQLEILANFDPLTGLANRGLLHAHLQNSIDKANRDKTQLALLMFDLDRF 593

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
           K IND++GH  GD+++  +S++          + RLGG+EFA      +  ++A  LA +
Sbjct: 594 KDINDSYGHSAGDELLQMVSERFTSRLREGDLIARLGGDEFAVVLENITRPEDAGRLAQE 653

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +  +   +S+G  IH+  SAGI     H    + ++  AD ALY AK  GR     
Sbjct: 654 MLGTLAEA-YRLSAGALIHVGASAGIVLFPDHGSDAAILLQHADAALYKAKAEGRGVYHY 712

Query: 258 FSDIENNTC 266
           ++D   ++ 
Sbjct: 713 YTDELTDSA 721


>gi|302542290|ref|ZP_07294632.1| pas:ggdef [Streptomyces hygroscopicus ATCC 53653]
 gi|302459908|gb|EFL23001.1| pas:ggdef [Streptomyces himastatinicus ATCC 53653]
          Length = 1019

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 81/195 (41%), Gaps = 17/195 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
            +   + E      ++   +  D L+ L N + F   +          +   +++F D+D
Sbjct: 502 FNSRDVTERVRLQAQLQHSAEHDPLTDLPNRALFTKRVRHAVGGRRRTDAGTAVLFIDLD 561

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQE---- 191
            FK +ND  GH  GD+++   + +L     +       RLGG+EFAA  +G    +    
Sbjct: 562 GFKAVNDTVGHQAGDELLVQAARRLQESVRSGSGDCAARLGGDEFAALIVGDGADDTSTR 621

Query: 192 ---AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
                 +A+ LR  +      +  G  + +  S G+A          ++  AD A+Y AK
Sbjct: 622 ECRILEIADRLRARLSQ-PYRVEDGTEVRVAASIGVAFAEPGTSPGALMRNADLAMYRAK 680

Query: 249 KSGRNRVVCFSDIEN 263
            +G+NRV  ++    
Sbjct: 681 AAGKNRVELYAPQMQ 695


>gi|297538407|ref|YP_003674176.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera sp. 301]
 gi|297257754|gb|ADI29599.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera sp. 301]
          Length = 933

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 15/193 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S + E   + + I  L+  D L+ L N    I  L           +  +++F D+D+FK
Sbjct: 482 SDITERKQAADEIEHLAFYDSLTHLANRRMLIDRLKRAFFSSKRTGKDGALLFLDLDHFK 541

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM---FVGRLGGEEFAAAALGSSEQ--EAAIL 195
            +ND+ GH VGD ++  ++ +L            V RLGG+EF       S    EAA  
Sbjct: 542 TLNDSLGHAVGDLLLQQVASRLTECLRGGDTVARVARLGGDEFVVMLEDLSSHPIEAAAQ 601

Query: 196 ANDLRKIIENS--QINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGR 252
           A  + + I  +  Q    +    H T+S G+A    H +    ++  AD A+Y AK++GR
Sbjct: 602 AEAVGQKILATLNQPYQLATHEYHSTVSIGVALFGDHVDAQDDLVKHADIAMYQAKRAGR 661

Query: 253 NRVVCFSDIENNT 265
           N +  F  +    
Sbjct: 662 NTMRFFDPLMQEA 674


>gi|288942578|ref|YP_003444818.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Allochromatium vinosum DSM 180]
 gi|288897950|gb|ADC63786.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Allochromatium vinosum DSM 180]
          Length = 648

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 108/242 (44%), Gaps = 12/242 (4%)

Query: 32  SIFFSIFIATVIFIANIFLFYIGLTPFYG-LEYILVENLSLVIISITISLLLGYISGSIL 90
           S + S+     I I  +     G   F G L    + +L+   +    +++    +    
Sbjct: 148 SAWDSLHADAAIVIPEVRFRAKGEADFIGDLHIASIASLAEGALHYVCAIIDRTEAVRQR 207

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           + L  +  R+  L+  D L+GL N + F S L         Y  + +++F D+D FK++N
Sbjct: 208 QRLREASERLDYLAHHDALTGLPNRAYFQSRLEQCLQRAKRYQRRFALLFLDLDRFKEVN 267

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH VGD ++  +++ L         + RLGG+EF       SE     + + + +++
Sbjct: 268 DTLGHHVGDALLCRVAEILSAQIRDVDTIARLGGDEFVIILEDISEP--RFIMHFVDRVM 325

Query: 204 ENSQINIS-SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           ++    +   G    +T+S GI+        + T++ RAD A+Y  KKSGRN    F   
Sbjct: 326 DDFSRPLRLEGREFFVTVSVGISLYPDDGLDLETLVRRADIAMYQTKKSGRNGFSFFEPT 385

Query: 262 EN 263
            +
Sbjct: 386 MS 387


>gi|241206917|ref|YP_002978013.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860807|gb|ACS58474.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 539

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 59/182 (32%), Positives = 93/182 (51%), Gaps = 10/182 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           +   + ++       +   ++ D L+GL N   F       ++     +  +S+V FD+D
Sbjct: 332 LIDRLTQDRETLVGELRSAAQTDLLTGLYNRRGFEVAASALLTQAEHGSRWISVVLFDLD 391

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK+IND  GH  GD V+  ++      F +   + R GGEEF A    S+  +AAI+A 
Sbjct: 392 HFKKINDVHGHDAGDAVLRHVAGVARKNFRSFDLLVRHGGEEFLALLPDSTPDDAAIVAE 451

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNR 254
            +R  IE ++I + SG  + +T S G A R ++        ++ RAD ALY AK SGRN 
Sbjct: 452 RVRLAIEAAEIPLPSGDVLKVTASFGCAGRANEATNRNFEDLVKRADLALYAAKASGRNC 511

Query: 255 VV 256
           VV
Sbjct: 512 VV 513


>gi|119491300|ref|ZP_01623354.1| hypothetical protein L8106_21924 [Lyngbya sp. PCC 8106]
 gi|119453464|gb|EAW34626.1| hypothetical protein L8106_21924 [Lyngbya sp. PCC 8106]
          Length = 1266

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 12/211 (5%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-- 119
           +YI +E L+  I++I   ++    +   + +      ++   +  D L+GL N    I  
Sbjct: 790 DYIWLETLTTPILNIRGQVVRLQTTSRDVTDRVQVEQQLRHDALHDSLTGLPNRDLLISR 849

Query: 120 -----SSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                  L  Y + + +I+F D+D FK IND+ GH VGD+++  ++  L  +      V 
Sbjct: 850 IELALQRLKRYQDFQFAILFLDLDRFKVINDSLGHLVGDELLISVAQTLQGLIRPVDLVA 909

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-E 231
           R GG+EF           EA ++A  +   +++    I +   + IT S GI        
Sbjct: 910 RFGGDEFVILLEEIDNINEAILIAKRMITKLQS--PFILNQQEVFITPSIGIVYGSSDYH 967

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
               ++  AD A+Y AK  G  R   F    
Sbjct: 968 QAIDLLRDADTAMYRAKAKGGERYEIFDPSM 998


>gi|115380209|ref|ZP_01467234.1| gaf domain/ggdef domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115362792|gb|EAU62002.1| gaf domain/ggdef domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 668

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 9/189 (4%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128
           +   L +  I  +        + ++ +++  D L+GLLNH  F       ++    Y  K
Sbjct: 464 VLRMLEVMAIQAAQAVLRAQLFEQMERMATTDGLTGLLNHRTFQSKADEHLAQARRYQRK 523

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS++  DID+FK +ND +GHP GD V+  ++  L         V R GGEEFA     + 
Sbjct: 524 LSLILTDIDHFKSVNDTYGHPTGDAVLKGVAKILRDKARDTDIVARYGGEEFAIIMPETD 583

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247
            + A ++A  +R+ ++        GP + +T+S GI+    H      +I  +DQ LY A
Sbjct: 584 AKGALVIAERIREAVKAEVFQTEMGP-LKVTLSLGISTGPDHGYDKQHLIDLSDQCLYHA 642

Query: 248 KKSGRNRVV 256
           K++GRN+ V
Sbjct: 643 KRNGRNQSV 651


>gi|74312495|ref|YP_310914.1| hypothetical protein SSON_2013 [Shigella sonnei Ss046]
 gi|114154900|sp|Q3Z0N3|YEDQ_SHISS RecName: Full=Cellulose synthesis regulatory protein
 gi|73855972|gb|AAZ88679.1| conserved hypothetical protein [Shigella sonnei Ss046]
          Length = 569

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 367 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 426

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 427 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 486

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 487 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 546

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 547 LADRRLYLAKQAGRNRVCA 565


>gi|262404693|ref|ZP_06081248.1| sensory box/GGDEF family protein [Vibrio sp. RC586]
 gi|262349725|gb|EEY98863.1| sensory box/GGDEF family protein [Vibrio sp. RC586]
          Length = 579

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 11/186 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L ++   + +LS +D L+ + N   F   L          N  LSI+  D+D+FK  N
Sbjct: 388 EQLEVANQELERLSFLDSLTQVANRRRFDEQLHTLWHLHVRENHPLSIILCDVDFFKDYN 447

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH +GD+ +  ++     V       V R GGEEF      + +  A +LA  + + 
Sbjct: 448 DAYGHLMGDETLKQVAIAFTQVANRHSDCVARYGGEEFGILLPNTPQSGAVMLAERIHQK 507

Query: 203 IENSQINISSGPSIH-ITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I +  I  S       IT+S GI        +    ++  AD+ALY AK +GRN+   ++
Sbjct: 508 IRSLAIPHSHSKVADIITVSLGIVTHIPQPNDLPEQMVALADRALYQAKTNGRNQTSIYT 567

Query: 260 DIENNT 265
           + + +T
Sbjct: 568 ESDQHT 573


>gi|229106000|ref|ZP_04236621.1| GGDEF domain protein [Bacillus cereus Rock3-28]
 gi|229118904|ref|ZP_04248251.1| GGDEF domain protein [Bacillus cereus Rock1-3]
 gi|228664560|gb|EEL20055.1| GGDEF domain protein [Bacillus cereus Rock1-3]
 gi|228677395|gb|EEL31651.1| GGDEF domain protein [Bacillus cereus Rock3-28]
          Length = 351

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 75/242 (30%), Positives = 117/242 (48%), Gaps = 15/242 (6%)

Query: 27  FMIYFSIFFSIFIATV---IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           + I  S    IFIA +   I +  I+L    L+      YIL  ++S+V++ +  S+  G
Sbjct: 108 YTIVLSGIGVIFIARMQISIMLKLIWLHVYCLSILVVPMYILFNDISVVVLYLISSITTG 167

Query: 84  YI---SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVF 133
           YI   S + + +    +  + Q + ID L+GL N   F   +  +       N+ L ++ 
Sbjct: 168 YITFVSANYVLQSNELFQTMKQYATIDALTGLGNVRQFDLEMNHHIGNKHMENDSLCLLL 227

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK +ND +GHP GD+V+  +   L  +   P  V R GGEEFA            
Sbjct: 228 IDIDHFKYVNDTYGHPAGDEVLKQIGCILRGISTFPDLVFRKGGEEFALLIPQRGLSYGI 287

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            L   +R  +E     +  G  I IT+S GI+E    +    +I  AD ALY +K++GRN
Sbjct: 288 HLGEQIRIAVEKHSFQLLDGTKIKITVSVGISEYKGSQ--EQLIQAADDALYYSKRNGRN 345

Query: 254 RV 255
           +V
Sbjct: 346 QV 347


>gi|146312192|ref|YP_001177266.1| diguanylate cyclase [Enterobacter sp. 638]
 gi|145319068|gb|ABP61215.1| diguanylate cyclase [Enterobacter sp. 638]
          Length = 564

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 95/199 (47%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE 127
           L+ +    T +LL+ + +   ++  +F   N +   +  D L+ L N  A      +  E
Sbjct: 360 LASLWALFTATLLISWLVIRRMVSNMFTLQNSLQWQAWHDPLTRLNNRRALFDRAQALAE 419

Query: 128 -------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                    S++  D+D+FK IND FGH  GDKV++  +  +     +    GR+GGEEF
Sbjct: 420 ECRQQQLPFSVIQLDLDHFKSINDRFGHQAGDKVLSHTARLITHALRSSDVAGRVGGEEF 479

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIY 238
                G++ ++AA +A  +R  I   +I +    +  ++ S G++            +  
Sbjct: 480 CVVLPGATAEQAAGVAERIRVSINRKEILVKKSTTARVSASLGVSSTEENANFDFEQLQS 539

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD  LY+AK+ GRN+VVC
Sbjct: 540 IADARLYLAKQQGRNQVVC 558


>gi|28868556|ref|NP_791175.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28851794|gb|AAO54870.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 763

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
            S L+E       ++ ++  D L+ L N +  ++ L         + E+ +++F D+D F
Sbjct: 315 QSRLQERERISEELAYIAFHDELTALFNRAYLMNELADAFSNPDHHYERATVLFLDLDGF 374

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
           K +ND+ GH  GD+++  ++++L         + R+GG+EFA   +G  + + A  +A  
Sbjct: 375 KVVNDSMGHLAGDQLLKRVANRLQNCVRANDVLARIGGDEFAILLVGKDQPETAVKMAER 434

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           +   +  + I I  G  I I+ S GI            ++  AD A+Y AKK GR R   
Sbjct: 435 IVSQLHAA-IEI-EGQDIFISCSIGIVTAGEGHSKPEDLLRDADVAMYSAKKQGRGRWSL 492

Query: 258 FSDIENNTC 266
           F+       
Sbjct: 493 FNASMREAA 501


>gi|330446090|ref|ZP_08309742.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490281|dbj|GAA04239.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 395

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 113/245 (46%), Gaps = 22/245 (8%)

Query: 22  FSPHTFMIYFSIF-FSIFIATVIFI-ANIFLFYIGLTPFYGLEYILVENLSLVIISITIS 79
              +T  + F +   ++FI  ++ I A+    YI     + + Y+     S+ +I  T  
Sbjct: 151 LPQYTLALAFGLVSLTMFIRALLLIQADELNQYIQAGWVHQIPYLS----SMFLIMATSF 206

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIV 132
            L+  ++G + +        +  LS  D L+ L N                     L ++
Sbjct: 207 SLVWLVNGRLTRS-------VEALSIRDNLTSLYNRRGMDKLTNQITTDKSKQPLPLVVM 259

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK IND FGH VGD+VI  +S+Q+           R GGEEF      +    A
Sbjct: 260 MCDIDHFKSINDQFGHLVGDQVIVNVSEQIQACVRVNDVAIRYGGEEFLILLPNTPLANA 319

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            I+A  +R  + N  I+  +     I+IS G++++   + + ++I  AD+ALY AK++GR
Sbjct: 320 HIVAERIRNAVYNIPIHHQNMS--PISISIGVSQQHKGDNLDSLIREADKALYQAKQNGR 377

Query: 253 NRVVC 257
           N VV 
Sbjct: 378 NCVVI 382


>gi|294626944|ref|ZP_06705535.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292598804|gb|EFF42950.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 296

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 79/170 (46%), Gaps = 8/170 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNF 146
                 + + S  D L+GL N      SL             LS++  D+D+FKQ ND+ 
Sbjct: 116 LRLRESLRRQSIRDALTGLYNRRYLEESLSHELARCARRGLPLSVLMLDVDHFKQFNDSQ 175

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD ++A + + L+          R GGEEF      +  +EA  +A  +R  I   
Sbjct: 176 GHAGGDLLLAAVGELLLTRLRAEDVACRYGGEEFTVLLPEADGEEAMRVAEQIRGYIAAL 235

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
            ++  +     +T S G+A      E  +++I +AD ALY AK +GRNRV
Sbjct: 236 AVSDGARALPKVTASIGVASFPVDGEQGASLIQKADAALYRAKHAGRNRV 285


>gi|260868548|ref|YP_003234950.1| putative diguanylate cyclase [Escherichia coli O111:H- str. 11128]
 gi|257764904|dbj|BAI36399.1| predicted diguanylate cyclase [Escherichia coli O111:H- str. 11128]
          Length = 564

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 542 LADRRLYLAKQAGRNRVCA 560


>gi|260844354|ref|YP_003222132.1| putative diguanylate cyclase [Escherichia coli O103:H2 str. 12009]
 gi|257759501|dbj|BAI30998.1| predicted diguanylate cyclase [Escherichia coli O103:H2 str. 12009]
          Length = 564

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 542 LADRRLYLAKQAGRNRVCA 560


>gi|228902555|ref|ZP_04066706.1| Sensory box/GGDEF family protein [Bacillus thuringiensis IBL 4222]
 gi|228856996|gb|EEN01505.1| Sensory box/GGDEF family protein [Bacillus thuringiensis IBL 4222]
          Length = 415

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ +D L+ + N   F   L          +EK++I+ FDID FK +
Sbjct: 239 ITELDEIYQEQERLAMVDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTV 298

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 299 NDTYGHDFGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 358

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q    S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 359 IETKQFTGIS----KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 410


>gi|114777422|ref|ZP_01452419.1| diguanylate cyclase (GGDEF domain) [Mariprofundus ferrooxydans
           PV-1]
 gi|114552204|gb|EAU54706.1| diguanylate cyclase (GGDEF domain) [Mariprofundus ferrooxydans
           PV-1]
          Length = 411

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 83/169 (49%), Gaps = 2/169 (1%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-KLSIVFFDIDYFKQINDNFGH 148
           L E+  +  R    +R D L+GL N       L S  +    +V  D+D FK IND +GH
Sbjct: 240 LTEMSDNLARAKLDARNDPLTGLANRRHLAEFLNSLGKNSFCVVICDVDNFKNINDTYGH 299

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+++  L+  L+    +     R+GGEEF      +  Q    +A  LR  ++   +
Sbjct: 300 DAGDEILRQLAAILLGSTRSTDLAARIGGEEFCIVFPDTDLQSCVGMAESLRHSVDLQPL 359

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             ++G  I +TIS G+A     E  +     AD+ALY +K++GRN+V  
Sbjct: 360 KTAAG-DIAVTISIGLAPHKEDENHAATFKAADKALYQSKENGRNQVSV 407


>gi|34557352|ref|NP_907167.1| hypothetical protein WS0964 [Wolinella succinogenes DSM 1740]
 gi|34483068|emb|CAE10067.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 804

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 59/169 (34%), Positives = 86/169 (50%), Gaps = 10/169 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            + +++  D L+ + N + F       I  L  Y + LS+V FDID FK+IND +GH VG
Sbjct: 638 ELEKIAYYDSLTQIYNRNKFNELITREIELLKRYKQPLSLVIFDIDRFKRINDTYGHRVG 697

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+A L+  +     +     R GGEEF      +  Q A +LA  +R  IE  +    
Sbjct: 698 DEVLAELAGIVSREIRSTDIFVRWGGEEFVIVTPQTPTQGAQLLAEKIRSKIEEWKF--- 754

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            G    +T S G+      E I + I RAD+ LY AK +GRN+VV   +
Sbjct: 755 EGVEECVTCSFGVTNILRLESIESAIERADELLYKAKNNGRNQVVMAEE 803


>gi|330820150|ref|YP_004349012.1| Diguanylate cyclase/phosphodiesterase [Burkholderia gladioli BSR3]
 gi|327372145|gb|AEA63500.1| Diguanylate cyclase/phosphodiesterase [Burkholderia gladioli BSR3]
          Length = 695

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 60/215 (27%), Positives = 97/215 (45%), Gaps = 15/215 (6%)

Query: 65  LVENLSLVIISITIS-LLLGYI---SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-- 118
           L   ++L   +I I+ LLL  I   +  + + +      I +L+ +D L+GL N      
Sbjct: 216 LATTVTLFTFAILIATLLLSRIDMRNSRLARAVSSLNGEIVRLATLDTLTGLPNRGTLNA 275

Query: 119 -----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                I          +++F D+D FK IND+ GH VGD+V+   + +L         V 
Sbjct: 276 RMVEAIDRARRRQTGFAVLFMDLDGFKAINDSLGHSVGDQVLVSFAQRLRGCVRAADTVA 335

Query: 174 RLGGEEFAAAA-LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           RLGG+EF        S Q+A ++A  + +   +     S+   + +T S GIA      E
Sbjct: 336 RLGGDEFVVLVEPLVSPQDARLVAEKVLEHTRDGA--WSADTPLPVTPSIGIALYPRDGE 393

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            + T++  AD A+Y AK+ GR     F    N+  
Sbjct: 394 TVDTLLKHADAAMYEAKRGGRGTYRFFEVGMNDAA 428


>gi|307825601|ref|ZP_07655819.1| response regulator receiver modulated diguanylate cyclase
            [Methylobacter tundripaludum SV96]
 gi|307733487|gb|EFO04346.1| response regulator receiver modulated diguanylate cyclase
            [Methylobacter tundripaludum SV96]
          Length = 1640

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 90/196 (45%), Gaps = 13/196 (6%)

Query: 76   ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
            I+  + L  +   +L  +      + +++  D L+G+ N       L           + 
Sbjct: 1447 ISPGITLMRVHNQLL--IKRHKKELKRIAHYDALTGIPNRVLLADRLKQAVSQTKRERKI 1504

Query: 129  LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-S 187
            L I + D+D FK +ND  GH  GD+V+  ++ ++  +      V RLGG+EF       +
Sbjct: 1505 LGICYLDLDGFKSVNDTLGHQAGDQVLIEMARRMGNILREGDTVARLGGDEFVVLLPNLN 1564

Query: 188  SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYV 246
             E+E       L ++I    I I    S  +T S G++   + +     ++  ADQA+Y 
Sbjct: 1565 HEEECIATLKRLHEVIA-LPICIQD-QSFSLTSSIGVSIFPNDDNDPDVLLGHADQAMYA 1622

Query: 247  AKKSGRNRVVCFSDIE 262
            AK+SG+NR   ++ ++
Sbjct: 1623 AKQSGKNRYHFYNPLD 1638


>gi|307720283|ref|YP_003891423.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
 gi|306978376|gb|ADN08411.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
          Length = 604

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 58/162 (35%), Positives = 86/162 (53%), Gaps = 12/162 (7%)

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            S ID L+G+ N   F       I+    Y    S++  DID+FK+IND +GH VGDKV+
Sbjct: 447 QSIIDPLTGIYNRRYFERKISEEITRCERYEMVFSLIMLDIDFFKRINDTYGHDVGDKVL 506

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              S  ++        + R+GGEEF      +++++A   A DLRK ++N Q        
Sbjct: 507 QSHSALILENLRESDILCRVGGEEFMIILPQTTQEQAYYKAEDLRKKVQNEQ-----DMH 561

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + IT+S G+A+    +   T+  R D ALY AK+SGRN+V  
Sbjct: 562 LQITMSFGVAQFHKADTYETLYKRVDTALYKAKESGRNKVAV 603


>gi|188997461|ref|YP_001931712.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932528|gb|ACD67158.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 800

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 5/163 (3%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++ + +  D L+ + N    +  +    E   K +I+  D+D FK+IND FGH +GD+++
Sbjct: 383 KLYRTANYDFLTRVFNRRKMMELIQKNIENSKKFAILMLDMDDFKRINDTFGHDLGDEIL 442

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +   L  +      +GR GGEEF   +  +  +EA  +A D+RK I    + +     
Sbjct: 443 KEIVKILKNIRRQQDIIGRYGGEEFIILSPDADGKEALNIAEDIRKAISEKPVVVRDNK- 501

Query: 216 IHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I+I++S GIAE   H    S ++  AD ALY AKK G+N+ V 
Sbjct: 502 IYISVSIGIAEFPIHGNSPSELLKAADIALYKAKKEGKNKAVY 544


>gi|330950914|gb|EGH51174.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 509

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 13/199 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSY 125
           I+ + I L L ++    L+    + + ++ L+  D L+GL N                  
Sbjct: 306 ILCLGI-LWLTWLLCRELRRRHRAEDALASLAATDGLTGLDNRRQLDEAMEVEWARAQRS 364

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAA 184
            ++LS++  D+D+FK  N+  GH  GD+ +  ++  +      P   V R GGEEF    
Sbjct: 365 GKQLSLLMIDVDHFKAFNERHGHQGGDEALRLIAQTISYCIRRPGDRVARYGGEEFVVVL 424

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQ 242
             +    A ++A  +RK  E   + +++     IT+S G+A       + +      AD+
Sbjct: 425 PETDLPGAMLIAEKIRKAAEALPLFMNA--EYPITVSIGVASEVVRQGDKLEAFFGVADK 482

Query: 243 ALYVAKKSGRNRVVCFSDI 261
           ALY AK +GRNRV   S +
Sbjct: 483 ALYQAKDNGRNRVEYRSSV 501


>gi|310765480|gb|ADP10430.1| sensory box protein [Erwinia sp. Ejp617]
          Length = 946

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 11/192 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKL-SIVFFDI 136
            +    + +   +  RI  ++  D L+ L N   F   L          ++L +++  D+
Sbjct: 508 LLIADDVTDQRAADARIHHMAHHDNLTSLPNRVLFNQHLTTALREDRDAQRLTAVLGLDL 567

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FK +ND  GH VGD ++  ++ +L  V      + R GG+EF+    G +  +EA  +
Sbjct: 568 DNFKNVNDALGHQVGDALLCSVAVRLRSVLRDRDTLARNGGDEFSIVLPGLTHSEEAEAV 627

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
           A  L + I         G ++ I +S GI    +       ++  AD ALY AK++GRNR
Sbjct: 628 ARRLIETIR--PPFTIDGHNLSIGLSIGITLAQNGMTSPDYLLRCADMALYAAKRNGRNR 685

Query: 255 VVCFSDIENNTC 266
              F+    +T 
Sbjct: 686 FEYFTKAMGDTA 697


>gi|145299969|ref|YP_001142810.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852741|gb|ABO91062.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 320

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 6/191 (3%)

Query: 72  VIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---N 126
           +   +T   + G+  ++   + +L      +S+LS  D L+ L N       L ++    
Sbjct: 128 ITAQLTADAMPGWHIVTFRDIHDLHCMIEEVSRLSCTDPLTELSNRRGAEQQLQAHWLQG 187

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             LS++  D+D+FKQ+ND +GHP GD  +  ++  +         + R GGEEF     G
Sbjct: 188 RPLSVILCDVDHFKQVNDRYGHPAGDAALCGVARIMEEQLQEKECLARWGGEEFLLILPG 247

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
           +        A  LR+++  SQIN        +T+S G A     + +  ++  AD+ALY 
Sbjct: 248 ADAARVVSRAEQLRQLLSASQINWHHHH-FSLTMSFGCATLTTGQSLDNLLLVADRALYQ 306

Query: 247 AKKSGRNRVVC 257
           AK  GRNRV+ 
Sbjct: 307 AKAQGRNRVLF 317


>gi|16331282|ref|NP_442010.1| hypothetical protein slr0359 [Synechocystis sp. PCC 6803]
 gi|1001455|dbj|BAA10080.1| slr0359 [Synechocystis sp. PCC 6803]
          Length = 1244

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 85/189 (44%), Gaps = 12/189 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYF 139
           S + E  ++  ++   +  D L+ L N S F+  LG          + + +++F D+D F
Sbjct: 779 SDITERKLAAEKLHYNANHDSLTNLPNRSMFLDRLGHALQRNLRRRDLRFAVLFLDLDGF 838

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILAND 198
           K IND+ GH  GD ++  ++ +L         + RLGG+EF       +  ++   +A  
Sbjct: 839 KIINDSLGHSCGDLLLQGIAHRLRQCLRPEDTLARLGGDEFTMLIENITCPEDVIAVAQR 898

Query: 199 LRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +  E  +    +G  I    S GIA    H      ++  AD A+Y AK +G+ R   
Sbjct: 899 IHQ--ELQKPFNLNGQEIFTNTSIGIALNHPHYGHPQDVLRDADTAMYRAKAAGKGRYAI 956

Query: 258 FSDIENNTC 266
           F+   ++  
Sbjct: 957 FNQTMHHHA 965


>gi|257486683|ref|ZP_05640724.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|331010155|gb|EGH90211.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 763

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 69/271 (25%), Positives = 117/271 (43%), Gaps = 41/271 (15%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE-------------NLSLVIISI 76
           Y  +F  +F   V  +    L  + L     L  ++ E              L L I +I
Sbjct: 185 YNGMFHQMFRYGVSLLLGAGLLTMHLMGMRALRLVMPEGAALHIPGTENSQQLGLTIAAI 244

Query: 77  TISLLLGYISGS------------------ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           T+ ++ G IS +                  +L +L  +   + Q++  D L+ L+N   F
Sbjct: 245 TLLIIAGSISAAMADKKLQGKEHDLQRVNALLSQLDQARVSLQQVAHYDPLTNLINRRGF 304

Query: 119 I----SSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                  L  +   N  L+++F DID+FK+IND+ GH  GD+++  +++++         
Sbjct: 305 NQIFAEKLQEHTYNNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDV 364

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           V R GG+EF         +EA  LA  + + ++ +     +G  + +T S GIA      
Sbjct: 365 VSRFGGDEFCILLSIPDYEEARHLAYRVMQKMKETI--ALAGRRMVMTTSIGIAVFPRDG 422

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                ++  AD ALY +K +GRNRV  FS  
Sbjct: 423 STCDELLKHADLALYQSKGNGRNRVNFFSPA 453


>gi|254522442|ref|ZP_05134497.1| ggdef domain protein [Stenotrophomonas sp. SKA14]
 gi|219720033|gb|EED38558.1| ggdef domain protein [Stenotrophomonas sp. SKA14]
          Length = 580

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 79/172 (45%), Gaps = 5/172 (2%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNF 146
           +E     + + QL+  D L+GLLN  A    +   + + +    ++  D+D FK IND  
Sbjct: 401 RERSALTSELRQLAGTDDLTGLLNRRALDQRVQQRHAEGAAAAVVILLDVDRFKSINDGH 460

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+V+  ++  L         + R GGEEF              LA  LR  ++  
Sbjct: 461 GHDAGDEVLVQVAQLLQRHLRRSDSIARYGGEEFLVLLADGDLDAGRRLAESLRLALQQL 520

Query: 207 QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            I +  G ++ +T S G+AE         T++  AD A+Y AK  GR+RV  
Sbjct: 521 DIRVGGGTALRVTASFGVAEGGTDALGWRTLLRAADAAMYQAKAQGRDRVRV 572


>gi|170725870|ref|YP_001759896.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella woodyi ATCC 51908]
 gi|169811217|gb|ACA85801.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella woodyi ATCC 51908]
          Length = 301

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 85/186 (45%), Gaps = 15/186 (8%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSI 131
           +++   +   ++  L    + +  ++  D L+ L N    I         +  +   LS+
Sbjct: 112 AIVTARVGTQVI--LKQQSDTLRSMALHDQLTSLFNRHYLIEAANSKVARIKRHGGTLSL 169

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DIDYFK +ND FGH  GD V+  ++  L         V R GGEEF       S  +
Sbjct: 170 MMIDIDYFKLVNDKFGHQAGDTVLRAVASVLSSGSRKEDVVARFGGEEFVVLLDDCSILD 229

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250
           A   A  LR +IE           I +T S GIAE     E    ++ RADQA+Y+AK+ 
Sbjct: 230 ADDKAEQLRSLIEQLIPE-----GISVTASFGIAELDPDGETFEHLLARADQAVYLAKEQ 284

Query: 251 GRNRVV 256
           GRN VV
Sbjct: 285 GRNCVV 290


>gi|103487180|ref|YP_616741.1| diguanylate cyclase with PAS/PAC sensor [Sphingopyxis alaskensis
           RB2256]
 gi|98977257|gb|ABF53408.1| diguanylate cyclase with PAS/PAC sensor [Sphingopyxis alaskensis
           RB2256]
          Length = 594

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 90/170 (52%), Gaps = 11/170 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSA---FISSL----GSYNEKLSIVFFDIDYFKQINDN 145
           L  + +   +++  D L+GL N      F+        ++   L++  FDID+FK+IND 
Sbjct: 423 LEAARSAAERVANTDMLTGLPNRRHTLTFLEEAMAGARAHGAPLAVAIFDIDHFKRINDT 482

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD+VI  ++ +   V      +GR+GGEEF      +S     I+A  +RK +EN
Sbjct: 483 HGHATGDQVIQRVAQRARSVLRDEDMIGRIGGEEFVCILQRASALSGEIVAERVRKAVEN 542

Query: 206 SQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
               +  G  +   T+S G+A    ++ I  +++RADQALY AK+ GRNR
Sbjct: 543 G---VGQGDGLPPTTVSIGLAVYDGEQDIEELLHRADQALYAAKREGRNR 589


>gi|114562896|ref|YP_750409.1| diguanylate cyclase with PAS/PAC sensor [Shewanella frigidimarina
           NCIMB 400]
 gi|114334189|gb|ABI71571.1| diguanylate cyclase with PAS/PAC sensor [Shewanella frigidimarina
           NCIMB 400]
          Length = 294

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 11/178 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
              + E  +   ++  ++  D L+ L N +     L             LS++F DID F
Sbjct: 111 AHDITERKLMEQQLHYIAGHDPLTELPNRALLFGRLQTSLGLARREGSHLSLLFIDIDGF 170

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
           K +ND++GH VGDK++  ++ +L         VGR GG+EF     G        ++  +
Sbjct: 171 KHVNDSYGHLVGDKLLKNIAQRLRDCVRKSDTVGRFGGDEFVVVLNGIDSFDNVLVITEN 230

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
           +R  +E +        ++ ++ S G+A      +    ++  ADQA+Y AK +G NRV
Sbjct: 231 IRAQLEKTYQF--DDLNLQLSPSIGVARYPDNGDDEQQLLQYADQAMYRAKNAGGNRV 286


>gi|296161270|ref|ZP_06844078.1| diguanylate cyclase [Burkholderia sp. Ch1-1]
 gi|295888428|gb|EFG68238.1| diguanylate cyclase [Burkholderia sp. Ch1-1]
          Length = 372

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 15/175 (8%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFG 147
               R+ QL   D L+GL N   F   L         Y   ++ +F DID FK+IND +G
Sbjct: 186 AHRERLKQLGMTDSLTGLANRRYFDERLREEVMRAVRYRMPVACLFIDIDSFKRINDTYG 245

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+ +A ++  +         V R GGEEFAA   G    +A  +A  +R  +E   
Sbjct: 246 HQTGDRALAAVAACVRQQVRLGDTVARYGGEEFAALLQG-DRADALTVAERVRLAVERLA 304

Query: 208 INISSGPSIHITISAGIAERCHKEPIST-------IIYRADQALYVAKKSGRNRV 255
           +    G  I +T+S G+A R      +        I+  AD+A+Y AK++GRNR+
Sbjct: 305 LQDDHGERIALTVSIGVASRMVSGTPTEAATLGGAIMEEADRAMYQAKRNGRNRI 359


>gi|74317498|ref|YP_315238.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Thiobacillus denitrificans ATCC 25259]
 gi|74056993|gb|AAZ97433.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 1012

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 80/190 (42%), Gaps = 14/190 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
             + E      +I  L+  D L+GL N    +  L           E  +++  D+D FK
Sbjct: 567 RDVTERKEVEAQIRSLAYFDSLTGLPNRRLLLDRLNQARLSSERTREYGALMILDLDRFK 626

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE------AAI 194
            +ND  GH VGD+++  ++ +L         V RLGG+EF     G    E      A  
Sbjct: 627 TLNDTQGHDVGDRLLIDVARRLTASVRQNDTVCRLGGDEFVVVLEGFGSDEDQAVTQAEA 686

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           +A  +R  +        +G   H T S G+   C H      ++ +AD ALY AK +GRN
Sbjct: 687 IAEKVRAALNQPYSLSGNGSRFHSTTSVGLTLFCGHDATADMLLKQADVALYQAKDAGRN 746

Query: 254 RVVCFSDIEN 263
            V  F+    
Sbjct: 747 LVRFFNPAMQ 756


>gi|257094133|ref|YP_003167774.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257046657|gb|ACV35845.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 1006

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 95/215 (44%), Gaps = 17/215 (7%)

Query: 64  ILVENLSLVIISITISLLLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +  E L++  +     ++  Y+S  + +     +   I  L+  D L+GL N       L
Sbjct: 536 VFPEWLTISSVRDGDGVVTHYVSALTDMSAHKAAQEEIRHLAFYDALTGLPNRRLLHDRL 595

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                       + +++F D+D FK +ND  GH +GD+++  +  +L         V RL
Sbjct: 596 RVAIASSVRSERQGALLFIDLDNFKTLNDTLGHDMGDRLLQQVGQRLSSSVREGDTVARL 655

Query: 176 GGEEFAAAALGSSE--QEAA----ILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
           GG+EF        E  +EAA    I+   + K++  ++    SG   H T S GI     
Sbjct: 656 GGDEFVVMLENLGERPEEAAGQSRIVGEKIIKLL--NRPYDLSGHDYHNTPSVGITLFGG 713

Query: 230 KE-PISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           ++  I  ++ RAD A+Y AK SGRN +  F     
Sbjct: 714 QQVGIDELMKRADLAMYEAKASGRNALRFFDPRMQ 748


>gi|229917551|ref|YP_002886197.1| diguanylate cyclase with PAS/PAC sensor [Exiguobacterium sp. AT1b]
 gi|229468980|gb|ACQ70752.1| diguanylate cyclase with PAS/PAC sensor [Exiguobacterium sp. AT1b]
          Length = 686

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 10/188 (5%)

Query: 81  LLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIV 132
           LL Y++ S  + +      ++  L+  D L+ L N   F++ L    ++       L+++
Sbjct: 499 LLHYLTVSREIMQRKALEKQLKHLAYHDTLTDLPNRRFFLAYLEEAIDRTEFEQGELAVL 558

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D FKQIND FGH VGD+++  L+ +L  V      + RLGG+EFA     +     
Sbjct: 559 ALDVDRFKQINDTFGHDVGDELLRQLARRLTSVLRKQDMIARLGGDEFAVLIRFNDPCAL 618

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             +A  + + ++  +       +   T S G A       I  ++ RAD ALY AK  GR
Sbjct: 619 HRVAEKIIQALQ--RPWEIDQHTFITTSSVGGARYVKGLSIKQLLKRADLALYEAKAGGR 676

Query: 253 NRVVCFSD 260
           N+     D
Sbjct: 677 NQYALAKD 684


>gi|170721106|ref|YP_001748794.1| diguanylate cyclase [Pseudomonas putida W619]
 gi|169759109|gb|ACA72425.1| diguanylate cyclase [Pseudomonas putida W619]
          Length = 527

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 109/233 (46%), Gaps = 20/233 (8%)

Query: 40  ATVIFIANIFLFYIGLT---PFYGLEYILVENLSLVIISITISLLLGYISGSILKE---- 92
           A +  + ++ L+++ LT   P + L                  +   Y   + LK     
Sbjct: 293 APLALVGSLLLWWLALTIARPLWQLAAGARTMDRTGTAERLHRVHAWYFEAAELKRAMLF 352

Query: 93  -LFISYNRISQL---SRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDN 145
            L +   RI +L   ++ D L+GL N  +    +S L +     S++  DID+FK+IND 
Sbjct: 353 GLNLLQERIGRLNRDAQTDPLTGLGNRRSLEFKLSLLEAEGRAFSVIVLDIDHFKRINDG 412

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD+V+  L+  +         + R GGEEF     G+SE  A  +A  LR ++++
Sbjct: 413 HGHDVGDQVLQRLAAIMRGCCREGDLLCRTGGEEFLMLLPGASEAVATAVAQRLRVMVQD 472

Query: 206 SQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
           + I     P   +TIS G+A    ++       + +AD ALY AK+ GRNRV 
Sbjct: 473 TAIE----PVGAVTISLGVAHWQAEQEREPGAALSQADSALYRAKREGRNRVC 521


>gi|309778800|ref|ZP_07673573.1| sensory box/GGDEF family protein [Ralstonia sp. 5_7_47FAA]
 gi|308922508|gb|EFP68132.1| sensory box/GGDEF family protein [Ralstonia sp. 5_7_47FAA]
          Length = 883

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDI 136
            +S + + ++  +  R+  L+  D L+GL N S FI+ L S        + +L++ F D+
Sbjct: 425 MLSFADITDIKRAEQRLRHLAAHDALTGLTNRSFFIAHLESAIESARDESRELALFFLDL 484

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAIL 195
           D FK +ND  GH  GD ++   + +L    G    + RLGG+EF        E +  A+L
Sbjct: 485 DRFKSVNDTAGHACGDTLLQSAAARLTDCIGPGDVIARLGGDEFVILIDQRVEGKRIALL 544

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           A  L + +     +  +G   ++ +S G+A   H     S ++  AD A+Y AK++GRNR
Sbjct: 545 AERLLQAMRE-PFDTVNG-RYYLGVSIGVALYPHDGISGSDLLRSADAAMYRAKQNGRNR 602

Query: 255 VVCFS 259
              ++
Sbjct: 603 AQFYT 607


>gi|262376898|ref|ZP_06070125.1| diguanylate cyclase (GGDEF) domain-containing protein
           [Acinetobacter lwoffii SH145]
 gi|262308243|gb|EEY89379.1| diguanylate cyclase (GGDEF) domain-containing protein
           [Acinetobacter lwoffii SH145]
          Length = 229

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 67/219 (30%), Positives = 107/219 (48%), Gaps = 13/219 (5%)

Query: 58  FYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
            + L Y+ V   SL I  S T+   + ++  ++ +    ++     ++  D L+GL N  
Sbjct: 3   LFSLIYLPVLTFSLYISWSSTLKSRMVFLQHTLNEYNRQAF---ENMAHTDSLTGLNNRR 59

Query: 117 AFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            F        +        ++++ FD+D+FKQIND +GH +GD+V+  L+          
Sbjct: 60  CFEYLAQQLVQQNFDQPVPMNLLVFDVDHFKQINDRYGHDIGDQVLQTLALSTRSEMRQH 119

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
             + R GGEEF A    +S  EA  +A  LR  IEN  I++ S      +IS G A    
Sbjct: 120 DILARYGGEEFIAFLPETSLDEALKVAERLRHNIENIVIDLDSQHRFSFSISIGAAILES 179

Query: 230 -KEPISTIIYRADQALYVAKKSGRNRVVCFS-DIENNTC 266
            +  + T+I +AD ALY AK +GRNRV  +  D+E +  
Sbjct: 180 CETDLMTLIKQADIALYQAKANGRNRVEAYDPDLEQSLA 218


>gi|209519573|ref|ZP_03268365.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. H160]
 gi|209499990|gb|EEA00054.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. H160]
          Length = 427

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 104/207 (50%), Gaps = 12/207 (5%)

Query: 63  YILVENLSLVIISITIS------LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           Y L  + SL+ + I IS      L+        + +     + + + +  D L+GL N  
Sbjct: 220 YGLHRDGSLLPVEIAISKINVGGLIEFTAVIRDIADRVQLMDLLQKQAVTDELTGLPNRR 279

Query: 117 AF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            F   + +L   + KLSI   DIDYFK+IND++GH  GD+V+  L+  ++          
Sbjct: 280 EFADTVENLLGTDSKLSIFILDIDYFKKINDSYGHDTGDEVLRVLAKVVMNADRRIGVFA 339

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI--SSGPSIHITISAGIAERCHKE 231
           R GGEEF AA  G   ++A  +A+DLR  IE          G  I  T+S G+ ER  +E
Sbjct: 340 RWGGEEFVAALPGLDIEQATSIADDLRLTIEQQNFEHIWRLGKPIPFTVSIGVTERQPRE 399

Query: 232 -PISTIIYRADQALYVAKKSGRNRVVC 257
             +  I+ RAD ALY AK +GRNRV  
Sbjct: 400 NDVGAIVKRADLALYRAKDNGRNRVEV 426


>gi|158422365|ref|YP_001523657.1| putative diguanylate cyclase (DGC) [Azorhizobium caulinodans ORS
           571]
 gi|158329254|dbj|BAF86739.1| putative diguanylate cyclase (DGC) [Azorhizobium caulinodans ORS
           571]
          Length = 566

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 62/199 (31%), Positives = 97/199 (48%), Gaps = 22/199 (11%)

Query: 80  LLLGYISGSILKELFISYNR--------------ISQLSRIDCLSGLLNHSAFISSL--- 122
           + L Y   S+L+ L  +  R              + +L+  D L+GLLN  +F++     
Sbjct: 361 MHLSYALRSLLRRLTSAETRYEMFSRKHEQDVAALKELADTDPLTGLLNRRSFLAMADVA 420

Query: 123 ---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                   +L I+  DID+FKQ+ND +GH  GD V+  ++D  V        + R GGEE
Sbjct: 421 LDSAHATGQLGILMADIDHFKQVNDTYGHAAGDAVLKHVADTFVRTLRAHDHLARFGGEE 480

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIY 238
           F A    +       LA  +R+ +  +++ +    +I +TIS G A    ++  +  +I 
Sbjct: 481 FVALLQDTDIAGMQALAERVREAVAATKV-VFEDQAIAVTISIGAALAHDQDRDMHKVIE 539

Query: 239 RADQALYVAKKSGRNRVVC 257
           RAD ALY AK SGRNR+V 
Sbjct: 540 RADLALYEAKNSGRNRIVI 558


>gi|149926777|ref|ZP_01915037.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Limnobacter sp. MED105]
 gi|149824706|gb|EDM83922.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Limnobacter sp. MED105]
          Length = 798

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 10/193 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFF 134
           L  I  + +  +  + +R+   +  D L+GL N  A   +L          + KL ++F 
Sbjct: 339 LISIFFTDISSIKRNESRMRHQATHDPLTGLPNRLALSQTLQELLGNDQVQDFKLGLLFI 398

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AA 193
           D+D FK +ND  GH  GD ++  +S +L  V  +   V RL G+EF       ++Q+ A 
Sbjct: 399 DLDGFKAVNDTLGHDRGDDLLIAVSKRLRSVVRSSDIVARLSGDEFVITLPYIADQDTAF 458

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
            +   +   +      +     I++  S G+A        +  ++  AD A+Y AK++G+
Sbjct: 459 NVGRKVVDAVSKKPFELGE-KKIYVGASVGVALFPTDATDVEGLLKHADIAMYQAKQAGK 517

Query: 253 NRVVCFSDIENNT 265
           N V  F    + T
Sbjct: 518 NTVRVFHANMSAT 530


>gi|191169238|ref|ZP_03030991.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B7A]
 gi|190900716|gb|EDV60512.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B7A]
          Length = 558

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 536 LADRRLYLAKQAGRNRVCA 554


>gi|224372148|ref|YP_002606520.1| diguanylate cyclase (GGDEF) domain protein [Nautilia profundicola
           AmH]
 gi|223588436|gb|ACM92172.1| diguanylate cyclase (GGDEF) domain protein [Nautilia profundicola
           AmH]
          Length = 558

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 64/196 (32%), Positives = 94/196 (47%), Gaps = 9/196 (4%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121
           L +++  I++ + +      IL+EL  S   + + S  D L+ L N           +  
Sbjct: 357 LEMLLNKISVPVAISLEKELILRELEDSNKMLYEKSISDPLTKLYNREYMKEFLSQKVQE 416

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              Y   LS+   DID+FK+IND +GH +GD V+  L++ L   F     V R GGEE  
Sbjct: 417 AKRYKFPLSVAMIDIDFFKKINDTYGHLIGDCVLKELAELLKDNFRGSDIVSRYGGEEIF 476

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                +    A     + RK +E           I ITISAG++E    E I  +I +AD
Sbjct: 477 IIMPFTDGINACKKLENFRKFVEEHDF--CEKKRIKITISAGVSEFDFGEDIEDLILKAD 534

Query: 242 QALYVAKKSGRNRVVC 257
           + +Y AKK GRN+VVC
Sbjct: 535 RKVYFAKKQGRNKVVC 550


>gi|221210503|ref|ZP_03583483.1| diguanylate cyclase [Burkholderia multivorans CGD1]
 gi|221169459|gb|EEE01926.1| diguanylate cyclase [Burkholderia multivorans CGD1]
          Length = 312

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 101/203 (49%), Gaps = 11/203 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           L     +  + +TIS +       + +E   +  ++ + +  D L+G+ N   F + L  
Sbjct: 113 LTRGRDVEAVCVTISDVTH--VSVMQREREEAVAKLREHANRDGLTGIANRRYFETRLGE 170

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   LS++ FD+D+FK IND FGH VGD V+   + ++  +       GR GG
Sbjct: 171 EFARWQRYGGDLSMLLFDLDHFKAINDRFGHAVGDAVLRETARRVAAIVRAQDTFGRFGG 230

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STI 236
           EEFA     ++  EA  +A+ +R  I  + ++ + G S+ +T S G A     +P    +
Sbjct: 231 EEFALLLPCTNLDEALQVADKVRDAIGRTPVD-AEGVSVAVTASVGAACAKLGQPACDAL 289

Query: 237 IYRADQALYVAKKSGRNRVVCFS 259
           +  AD ALY AK+ GR+R V ++
Sbjct: 290 VNDADAALYRAKRLGRDRSVGYA 312


>gi|242277880|ref|YP_002990009.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio salexigens DSM 2638]
 gi|242120774|gb|ACS78470.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio salexigens DSM 2638]
          Length = 716

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 94/213 (44%), Gaps = 12/213 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +  E +S+  I+     ++ YI+    + E   S  +I   +  D L+GL N +  I  +
Sbjct: 245 VFPEWISIKAITDVKGEVVNYIAVFRDISEAKASQRKIQHQAYHDALTGLPNRTLLIDRI 304

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                        ++++F D+D FK IND+ G+ +GD V+   + ++         V R+
Sbjct: 305 RKAIASSNDRKSCIALLFIDLDNFKNINDSLGYVIGDSVLQQAAARIREFIDEKDTVSRI 364

Query: 176 GGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF         + +AA++A+ +  +   +           IT S GIA      +  
Sbjct: 365 GGDEFVIMLKDLQDKHDAAVMADTIINLFAQAL--TVESHQFTITPSIGIALYPEDGKTP 422

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            +++  AD A+  AK+ GRNR   F+     + 
Sbjct: 423 YSLVRNADTAMNKAKQEGRNRYHLFTPGLTESA 455


>gi|209550963|ref|YP_002282880.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209536719|gb|ACI56654.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 385

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 54/193 (27%), Positives = 96/193 (49%), Gaps = 5/193 (2%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-EK 128
            + + ++   +L G     +L     S N++++L+  D L+G LN       L +   + 
Sbjct: 191 WMAVSAVAFIMLRGM--AMVLMAAERSRNQLTELAHHDPLTGALNRGGLAQRLPALGSQP 248

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +S++  DID+FKQ+ND  GH  GD ++   +     + G+   + R GG+EF       S
Sbjct: 249 VSLLIIDIDHFKQLNDRHGHASGDDILRLFASVSRSIMGSNDLLARQGGDEFLVVLKDVS 308

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVA 247
            Q+A  +A  +R     + ++     ++  T+S G+A R         +I +AD+ALY +
Sbjct: 309 GQDAVAIAERIRLAFAAAVLHQPD-LAVFPTLSIGVATRGKSGGDFEQLIKKADEALYRS 367

Query: 248 KKSGRNRVVCFSD 260
           K+ GRNRV  F +
Sbjct: 368 KREGRNRVKAFGE 380


>gi|145299722|ref|YP_001142563.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852494|gb|ABO90815.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 832

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 53/197 (26%), Positives = 84/197 (42%), Gaps = 18/197 (9%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDID 137
           I    + E   +  RI  L+  D L+GL N      +L     +        +++F D+D
Sbjct: 371 ICFEDISERKAAERRIQDLAYYDELTGLPNRRQLHETLAQAFSEASRDNLIGALLFIDLD 430

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS------EQE 191
           +FK IND+ GH  GD ++  +S +L  +      + RLGG+EF       S      E +
Sbjct: 431 HFKTINDSLGHATGDWLLKEVSSRLKRLVRQGDCLARLGGDEFVLLLPSLSASPPQAEMQ 490

Query: 192 AAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEP-ISTIIYRADQALYVAKK 249
           A ++A  L   I       + G  + HI  S GI     +E  +  ++ +AD A+Y AK 
Sbjct: 491 ADLIAERLISEIAA---PYNHGVQVLHIGASVGITLFPGREQGVDDLLKQADTAMYQAKS 547

Query: 250 SGRNRVVCFSDIENNTC 266
           +GR     F        
Sbjct: 548 AGRKTRRFFDASMQQQA 564


>gi|71909382|ref|YP_286969.1| PAS:GGDEF [Dechloromonas aromatica RCB]
 gi|71849003|gb|AAZ48499.1| PAS:GGDEF protein [Dechloromonas aromatica RCB]
          Length = 328

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
             + +   +   + Q + +D L+GL N  +F   L         Y E ++++  D+DYFK
Sbjct: 143 RDMTDYKNAQMALQQQATMDGLTGLANRRSFDEKLHVEWSRSQRYGEPIALILADVDYFK 202

Query: 141 QINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           + ND +GH  GD+ +  ++  L   VF       R GGEEFA    G+  Q A  +A  L
Sbjct: 203 RYNDCYGHQGGDECLKAVAGILRREVFRPTDMAARYGGEEFAIILPGTDLQGALTVAERL 262

Query: 200 RKIIENSQINISSGP-SIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVV 256
           R  +E S +  ++   S  +T+S G+A          +T++ +AD+ALY AK SGRN V 
Sbjct: 263 RADMERSALPHAASEVSPWVTLSIGVAAIVPDREALSATLVAKADRALYKAKGSGRNVVR 322

Query: 257 C 257
            
Sbjct: 323 A 323


>gi|167840992|ref|ZP_02467676.1| GGDEF domain protein [Burkholderia thailandensis MSMB43]
          Length = 311

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 91/178 (51%), Gaps = 9/178 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           + +E   +  ++ + +  D L+G+ N   F + L         Y   LS++ FD+D+FK 
Sbjct: 134 MQREREEAVAKLQEYANRDGLTGIANRRFFEARLRDEFSRWQRYGGNLSVLLFDLDHFKT 193

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH VGD V+  ++ ++  V  +    GR GGEEFA     +S  EA  +A  +R+
Sbjct: 194 INDRFGHVVGDNVLRMMAQRVADVVRSQDTFGRFGGEEFALLLPCTSLDEAMHVAEKIRQ 253

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
            I ++ I  + G  + +T S G A          T++  AD ALY AK+ GRN  V F
Sbjct: 254 TIGSTPIE-AEGVRVPVTASVGGAAAHAGALTHETLVNEADAALYRAKRQGRNCSVAF 310


>gi|188992247|ref|YP_001904257.1| putative sensor protein [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167734007|emb|CAP52213.1| putative sensor protein [Xanthomonas campestris pv. campestris]
          Length = 551

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 59/193 (30%), Positives = 93/193 (48%), Gaps = 11/193 (5%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SY 125
           + S+T++          L  L +    + Q S  D L+GL N      +L          
Sbjct: 353 LASLTVAEAAAEQLSLALHNLRL-RETLRQQSIRDPLTGLFNRRYLEEALNHELSRCTRR 411

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            + LS++  D+D+FKQ ND  GH  GD+V+A + + L+          R GGEE      
Sbjct: 412 VQPLSVLMLDVDHFKQFNDLHGHSGGDRVLAAIGELLLAQTRGEDICCRYGGEELTIILP 471

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERC-HKEPISTIIYRADQA 243
                 A+ +A  LR  I+  Q+ ++ G S+  IT S G+A    H    + ++ +AD+A
Sbjct: 472 EVDLATASAMAEKLRAGIDGLQV-MADGVSLPKITASFGVATFPGHAGNAAQLLRKADEA 530

Query: 244 LYVAKKSGRNRVV 256
           LY AK++GRN+VV
Sbjct: 531 LYRAKQAGRNQVV 543


>gi|146281532|ref|YP_001171685.1| hypothetical protein PST_1148 [Pseudomonas stutzeri A1501]
 gi|145569737|gb|ABP78843.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 376

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 101/251 (40%), Gaps = 29/251 (11%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL----------- 82
            F++F+   IFI    L ++       L+Y L   +    +++  S+LL           
Sbjct: 117 MFAVFLPPKIFIRYASLAFLSFVGLAALDYYLERPMDTTALALQASVLLVTLIWMCLFAG 176

Query: 83  ------------GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------S 124
                        Y   +    L     ++  L+  D L+GL N   F+           
Sbjct: 177 HVHRLRQRMRQRRYALQAHQDTLRGMMRQLEDLASTDELTGLYNRQRFLRIAEGDLSRLR 236

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
              +  +   D+D+FK+IND  GH  GD+V+   +            + R GGEEF    
Sbjct: 237 KGHQSGLALIDLDHFKRINDIHGHATGDRVLQTFAKVARSCLRDDDVLARYGGEEFVLLL 296

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +  ++       LR+   +++   +   + H+++S G+      + +   + RAD+AL
Sbjct: 297 PETDAEQFRACCERLREAFASAEPEDAEIAAGHLSLSIGLTLLNAGDELDAALQRADEAL 356

Query: 245 YVAKKSGRNRV 255
           Y AK++GRNR 
Sbjct: 357 YRAKRAGRNRC 367


>gi|47568531|ref|ZP_00239230.1| GGDEF family protein [Bacillus cereus G9241]
 gi|47554773|gb|EAL13125.1| GGDEF family protein [Bacillus cereus G9241]
          Length = 351

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 111/227 (48%), Gaps = 12/227 (5%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           SIFI  + F  N++   I + P   L   +   ++L ++  +++  + +IS + + +   
Sbjct: 126 SIFIRWIWF--NVYSLSILIVPLSMLFKDM-SIVALYLVCSSVAAYITFISANYVLQSNE 182

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
            + ++ Q + ID L+GL N   F   +  +       N+ L ++F DID+FK +ND +GH
Sbjct: 183 LFQKMKQYATIDALTGLGNVRQFDLEMNRHISNKRTKNDSLCLLFIDIDHFKSVNDTYGH 242

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           P GD+V+  +   L  +   P    R GGEEFA             +   +R  +E    
Sbjct: 243 PAGDEVLKQIGCILREISPFPDLAFRKGGEEFALLIPQKGLAYGMHMGEQVRTAVEKHSF 302

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  G  I IT+S GI+    ++     I  AD ALY +K++GRN+V
Sbjct: 303 QLLDGTKIKITVSVGISVY--EQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|331009696|gb|EGH89752.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 712

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 95/197 (48%), Gaps = 14/197 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           ++++  +  S++++L   Y ++ + +  D L+GLLN      ++          ++ L +
Sbjct: 254 AMVMTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVEGMLLRKEQTDKYLVV 310

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQ 190
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF     G    +
Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           +AA +A  L + +   +     G  I +  S GIA        +  ++  AD A+Y AK+
Sbjct: 371 QAAKIAEKLIERVSGRRQ--VDGVDITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKR 428

Query: 250 SGRNRVVCFSDIENNTC 266
           +GR +   +    N   
Sbjct: 429 AGRQQYRFYDQNMNGRA 445


>gi|313673733|ref|YP_004051844.1| diguanylate cyclase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940489|gb|ADR19681.1| diguanylate cyclase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 495

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 83/289 (28%), Positives = 124/289 (42%), Gaps = 39/289 (13%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFM----IYFSIFFSIFIATVIFIANIFLFYIGLTPFY 59
           + K+   I++ ++ N   +   T +    + F I     +A +I I+   L  + L+   
Sbjct: 210 TFKNLKKIYVVNDINTVHWRVITEIDKSELVFHILKRFALAIIIVISCTILIGLILSKIL 269

Query: 60  GLEYI-----LVENLSLVIISITISL-------LLGYISGSIL-----------KELFIS 96
           G   I     L +   L++   TI+         +G I+  +            KEL   
Sbjct: 270 GERIIRPILNLKKRTQLILDRETITSDYLYPNNEIGQIAKDLENITLDAIYLKNKELHDL 329

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
            +++  LS  D L+GL N       L         Y    SI+ FD+D FK INDN+GH 
Sbjct: 330 NDKLKALSETDQLTGLYNRRKLEMHLHHEFTRYLRYRGVFSIILFDVDNFKSINDNYGHS 389

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  LS  L           R GGEEF      ++ Q A I+A  +RKI+      
Sbjct: 390 TGDFVLKELSTLLKKHLRESDLPARWGGEEFLILCPETNGQNALIIAEKIRKIVSEYDF- 448

Query: 210 ISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              G    +TIS GIAE     P I +++ +AD+ LY AK SG+N  V 
Sbjct: 449 ---GIDRAVTISLGIAEIDENTPNIDSLLVKADKNLYKAKNSGKNCTVF 494


>gi|307822936|ref|ZP_07653166.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
 gi|307735711|gb|EFO06558.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
          Length = 463

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 73/276 (26%), Positives = 119/276 (43%), Gaps = 35/276 (12%)

Query: 16  EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIIS 75
           E N  + +     +  ++ F+     V FI  + L        +G+  I   +L  +I++
Sbjct: 187 ELNWLAGTTLVMAVLLTLGFTTLPGAVFFIVPLLLVLSFNVNLFGVATISSVSLMSIIVA 246

Query: 76  ----------------------ITISLLLGYISGSILKELFISYNRISQL----SRIDCL 109
                                    S  L  +  ++      S  R S+L    +  D L
Sbjct: 247 TAHNAGPFEVTDPADSNFRLMAFVFSSALTILGIALQNRQLTSIERSSELWKDAAEHDPL 306

Query: 110 SGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GL+N  AF+  L + +++        +    D+D+FK IND +GH  GD V+  L+  +
Sbjct: 307 TGLINRRAFLPRLQNEHQRALRTGNTYTFAMLDLDHFKSINDAYGHHCGDAVLCALAAVM 366

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
           V    +   V R+GGEEF          EA I    +RK  E+S   ++ G SI +T+S 
Sbjct: 367 VENCRSIDAVVRMGGEEFGILFPECHIDEALIALERIRKRFESSS-TMADGKSIFVTVSI 425

Query: 223 GIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVC 257
           G+A     E     ++ RAD+ALY AK  GRN++V 
Sbjct: 426 GVAAFAGTEEKDTEVVKRADRALYAAKAEGRNQIVV 461


>gi|259909891|ref|YP_002650247.1| sensory box protein [Erwinia pyrifoliae Ep1/96]
 gi|224965513|emb|CAX57045.1| sensory box protein [Erwinia pyrifoliae Ep1/96]
 gi|283479976|emb|CAY75892.1| Heme-regulated cyclic AMP phosphodiesterase [Erwinia pyrifoliae DSM
           12163]
          Length = 819

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 11/192 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKL-SIVFFDI 136
            +    + +   +  RI  ++  D L+ L N   F   L          ++L +++  D+
Sbjct: 381 LLIADDVTDQRAADARIHHMAHHDNLTSLPNRVLFNQHLTTALREDRDAQRLTAVLGLDL 440

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FK +ND  GH VGD ++  ++ +L  V      + R GG+EF+    G +  +EA  +
Sbjct: 441 DNFKNVNDALGHQVGDALLCSVAVRLRSVLRDRDTLARNGGDEFSIVLPGLTHSEEAEAV 500

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
           A  L + I         G ++ I +S GI    +       ++  AD ALY AK++GRNR
Sbjct: 501 ARRLIETIR--PPFTIDGHNLSIGLSIGITLAQNGMTSPDYLLRCADMALYAAKRNGRNR 558

Query: 255 VVCFSDIENNTC 266
              F+    +T 
Sbjct: 559 FEYFTKAMGDTA 570


>gi|163794463|ref|ZP_02188434.1| GGDEF domain [alpha proteobacterium BAL199]
 gi|159180187|gb|EDP64710.1| GGDEF domain [alpha proteobacterium BAL199]
          Length = 360

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 59/181 (32%), Positives = 83/181 (45%), Gaps = 9/181 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           S   +  L  S     + +  D L+GL N   F   L S           L ++  DID+
Sbjct: 160 SAEEIARLRKSLVATRREASTDGLTGLANRMQFERELRSAAAKAMEDGTTLCLLMADIDH 219

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK  ND +GH VGD+V+  +   L+          R GGEEF          EAA +A  
Sbjct: 220 FKTFNDTYGHMVGDQVLRLVGRVLIEAIRPGDLAARFGGEEFVVVLPECRLDEAARIAER 279

Query: 199 LRKII-ENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +R+ I E   +  SSG  +  +T+S G+      E +  +I RAD  LY AK++GRNRV 
Sbjct: 280 IRERIGEKHVVRRSSGDDLGTVTLSLGVTAYQPGEVVGQLIERADTGLYDAKQAGRNRVA 339

Query: 257 C 257
            
Sbjct: 340 V 340


>gi|39934786|ref|NP_947062.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009]
 gi|39648636|emb|CAE27157.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris
           CGA009]
          Length = 736

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 104/234 (44%), Gaps = 34/234 (14%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS 88
           I+ S    I I   + IA +F        F+G++  + +                     
Sbjct: 514 IFASRLLGIIITLQVAIAALFY-------FFGMDRGVRDRFE----------------RQ 550

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           + +EL I    +++ +  D L+GL N   F + L              S++ FDID+FK+
Sbjct: 551 LREELLIQTEDLARQAATDSLTGLANRMKFDARLNEELSRSLRNARPFSLIIFDIDHFKE 610

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GHPVGD+V+  LS  +         + R GGEEFA     +    A   A  LR 
Sbjct: 611 VNDIYGHPVGDQVLVRLSRTVDASIRQADLLARWGGEEFAILLPDTDAAAAYETAKKLRL 670

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++ ++           IT S G+A+    +   T++ RAD ALY AK +GRNRV
Sbjct: 671 LVAHTIFEHVG----TITASFGVAQVLPGDHADTLVARADNALYRAKLNGRNRV 720


>gi|46201460|ref|ZP_00208110.1| COG3706: Response regulator containing a CheY-like receiver domain
           and a GGDEF domain [Magnetospirillum magnetotacticum
           MS-1]
          Length = 470

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 9/170 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGH 148
               + +L+  D L+G+ N    +            Y   L+++  DID FK IND +GH
Sbjct: 296 QREEMRKLATTDMLTGVANRRQLVETGLHEFSRARRYGAHLALLMVDIDRFKAINDTWGH 355

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           P GD+ I  L+  +  +      VGR GGEEFA     +    A ++A  LR  ++++  
Sbjct: 356 PTGDRAIQALTTAITGIIRDQDKVGRFGGEEFAVILPETEMAGALVIAERLRAAVQDTAK 415

Query: 209 NISS-GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            +S     +  T+S G+A    K+     +I RAD+ LY AK  GRN+VV
Sbjct: 416 AVSDCSEMVGFTVSIGVATLDPKDKSFEDLIGRADKMLYAAKDGGRNQVV 465


>gi|307149961|ref|YP_003885345.1| PAS/PAC sensors-containing diguanylate cyclase/phosphodiesterase
           [Cyanothece sp. PCC 7822]
 gi|306980189|gb|ADN12070.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7822]
          Length = 806

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 12/186 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDY 138
              + E   +  ++   +  D L+GL N    +  +    ++         +++F D+D 
Sbjct: 359 NRDITERKRTERKLYHNALHDALTGLPNRILLMERVEQAIQRAKRRKNYCFAVLFIDLDR 418

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILAN 197
           FK IND+ GH VGD+++  ++ +L+        V RLGG+EF         E+EA  +  
Sbjct: 419 FKNINDSLGHIVGDQLLVAIAHRLLECVRASDTVARLGGDEFIIFLDELGQEKEAFKITE 478

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            + + ++ S      G  +  T S GIA         + I+  AD A+Y AK+ G+ R  
Sbjct: 479 RIIEQLKTSLF--VDGLEVFTTASIGIAFNSDDNHSATEILRNADLAMYRAKEQGKARYA 536

Query: 257 CFSDIE 262
            ++   
Sbjct: 537 VYNAAM 542


>gi|307720346|ref|YP_003891486.1| response regulator receiver modulated diguanylate cyclase
           [Sulfurimonas autotrophica DSM 16294]
 gi|306978439|gb|ADN08474.1| response regulator receiver modulated diguanylate cyclase
           [Sulfurimonas autotrophica DSM 16294]
          Length = 417

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 83/173 (47%), Gaps = 7/173 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           E   +   I+  +  D L+GL N   F  ++  Y        EK SI   DID+FK+IND
Sbjct: 243 EALENIQMITNYANRDYLTGLYNRRYFFETINEYIDEIKDSGEKFSIGMIDIDHFKKIND 302

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGDKVI  L+D L         V R GGEEF       ++  A  + N LR+  E
Sbjct: 303 TYGHDVGDKVITALADILRSSTNPHDVVARFGGEEFCVVLKNINQYSAHEIFNRLREEAE 362

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               ++     I+ ++S G      +E +   I  AD  LY AK +GR++VV 
Sbjct: 363 KFSFHLKDEQYINFSVSIGALLFNEEESLEENINAADMLLYKAKDNGRDQVVF 415


>gi|218888047|ref|YP_002437368.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218759001|gb|ACL09900.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 1251

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 12/183 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQIN 143
           E       ++ L+  D L+GL N +  +  +    ++         +++  D+D FK IN
Sbjct: 761 ERKQGEEMLTHLALHDPLTGLPNRALLLDRIERAIQRRRRNDSYRFAVLMLDLDRFKFIN 820

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GD ++  ++ ++  V      V RLGG+EFA             +    R+++
Sbjct: 821 DSHGHTTGDNLLVEVARRMRPVVRAGDTVARLGGDEFALLLEDVDSP--RRIVQITRRLL 878

Query: 204 ENSQINISSGPS-IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              +  +  G   +  + S G+  R    +    ++  AD A+Y AK  G+ R   F+  
Sbjct: 879 AALERPVRMGAKVVRTSASIGMVLRTQGYDTADALLRDADIAMYQAKAQGKGRFRVFNQS 938

Query: 262 ENN 264
            + 
Sbjct: 939 MHR 941


>gi|209519965|ref|ZP_03268745.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           sp. H160]
 gi|209499616|gb|EDZ99691.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           sp. H160]
          Length = 770

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 50/195 (25%), Positives = 89/195 (45%), Gaps = 16/195 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----------LSIV 132
            IS S +  +  +  ++  L+  D L+GL N +  I  +                 ++++
Sbjct: 312 LISFSDIGPVREAQRQLKFLATRDSLTGLYNRAYLIERMRDLFAPRADDTGDELADVAVL 371

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQ 190
           F D+D FK++ND  GH  GD ++  ++++L    G    + R+GG+EF       G    
Sbjct: 372 FVDLDGFKKVNDTAGHEAGDALLCSVAERLSACVGRGDTLARVGGDEFVIVVSAYGGDTD 431

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
           E   LAN +  +I        +G   ++  S GI+      + ++T++  AD A+Y AK+
Sbjct: 432 ELIGLANRVLDMIAV--PFAVAGNEYYLGASIGISLFPEDGQDVATLMRNADSAMYHAKQ 489

Query: 250 SGRNRVVCFSDIENN 264
            GRN    F+   N 
Sbjct: 490 RGRNNFQFFTAELNQ 504


>gi|220908904|ref|YP_002484215.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Cyanothece sp.
           PCC 7425]
 gi|219865515|gb|ACL45854.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7425]
          Length = 744

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 12/192 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEK----LSIVFFDI 136
           I+   + E       + + +  D L+ L N + F++ L         +     ++ F D+
Sbjct: 261 ITARDISERKQKEAELHRQAFYDPLTELPNRTYFMNRLTKVLERAGRRQDFHYAVFFLDL 320

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FK +ND+ GH +GD+ +  ++ +L         V RLGG+EFA      S+      +
Sbjct: 321 DRFKVVNDSLGHLLGDEFLKAIARRLSSCLREEDMVARLGGDEFAILLEELSNPDIVHRI 380

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  L++++  S         +  T S GIA    + E    I+  AD A+Y AK  G+ R
Sbjct: 381 AERLQRVL--SAPFTLKQHELFTTASIGIALGTSYYEQPEAILRDADIAMYQAKTQGKAR 438

Query: 255 VVCFSDIENNTC 266
            + F    +   
Sbjct: 439 HIIFDQAMHTRA 450


>gi|145298007|ref|YP_001140848.1| GGDEF/EAL domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850779|gb|ABO89100.1| GGDEF/EAL domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 816

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 19/191 (9%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           I+ S +  +  +  +++ L+  D L+ L N +     L           ++L+++F D+D
Sbjct: 368 ITFSDISAIRKAEAQLNHLAYHDPLTELGNRNLLQERLELEIKTAQLNRQQLALLFIDLD 427

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----A 192
            FK INDN GH  GD+++  L+ ++           RLGG+EF        +Q+     A
Sbjct: 428 GFKLINDNLGHRAGDQLLKLLAGRIRQSLRHNDVAIRLGGDEFLVLIPYFEQQDELAQLA 487

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
             L   LR+ +E           + I+ S GIA    H      ++  AD A+Y AK  G
Sbjct: 488 EQLLARLREPVE------LEHEQVAISASIGIALYPEHARSPDALVSAADNAMYEAKSQG 541

Query: 252 RNRVVCFSDIE 262
           RN  + +S   
Sbjct: 542 RNGYLFYSPDM 552


>gi|82542876|ref|YP_406823.1| diguanylate cyclase AdrA [Shigella boydii Sb227]
 gi|157157429|ref|YP_001461563.1| diguanylate cyclase AdrA [Escherichia coli E24377A]
 gi|157159904|ref|YP_001457222.1| diguanylate cyclase AdrA [Escherichia coli HS]
 gi|218552948|ref|YP_002385861.1| diguanylate cyclase AdrA [Escherichia coli IAI1]
 gi|218693846|ref|YP_002401513.1| diguanylate cyclase AdrA [Escherichia coli 55989]
 gi|256020354|ref|ZP_05434219.1| diguanylate cyclase AdrA [Shigella sp. D9]
 gi|260842585|ref|YP_003220363.1| putative diguanylate cyclase [Escherichia coli O103:H2 str. 12009]
 gi|260853607|ref|YP_003227498.1| putative diguanylate cyclase [Escherichia coli O26:H11 str. 11368]
 gi|260866546|ref|YP_003232948.1| putative diguanylate cyclase [Escherichia coli O111:H- str. 11128]
 gi|293418452|ref|ZP_06660887.1| adrA [Escherichia coli B088]
 gi|300820379|ref|ZP_07100531.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
 gi|301330763|ref|ZP_07223361.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|309794893|ref|ZP_07689314.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
 gi|331666732|ref|ZP_08367606.1| protein AdrA [Escherichia coli TA271]
 gi|331676051|ref|ZP_08376763.1| protein AdrA [Escherichia coli H591]
 gi|332281529|ref|ZP_08393942.1| diguanylate cyclase AdrA [Shigella sp. D9]
 gi|81244287|gb|ABB64995.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|157065584|gb|ABV04839.1| MASE2 domain/diguanylate cyclase [Escherichia coli HS]
 gi|157079459|gb|ABV19167.1| MASE2 domain/diguanylate cyclase [Escherichia coli E24377A]
 gi|218350578|emb|CAU96268.1| putative diguanylate cyclase [Escherichia coli 55989]
 gi|218359716|emb|CAQ97257.1| putative diguanylate cyclase [Escherichia coli IAI1]
 gi|257752256|dbj|BAI23758.1| predicted diguanylate cyclase [Escherichia coli O26:H11 str. 11368]
 gi|257757732|dbj|BAI29229.1| predicted diguanylate cyclase [Escherichia coli O103:H2 str. 12009]
 gi|257762902|dbj|BAI34397.1| predicted diguanylate cyclase [Escherichia coli O111:H- str. 11128]
 gi|291324980|gb|EFE64395.1| adrA [Escherichia coli B088]
 gi|300527164|gb|EFK48233.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
 gi|300843276|gb|EFK71036.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|308121546|gb|EFO58808.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
 gi|320173800|gb|EFW48983.1| Protein YaiC [Shigella dysenteriae CDC 74-1112]
 gi|320187593|gb|EFW62276.1| Protein YaiC [Shigella flexneri CDC 796-83]
 gi|320201627|gb|EFW76203.1| Protein YaiC [Escherichia coli EC4100B]
 gi|323160509|gb|EFZ46457.1| diguanylate cyclase domain protein [Escherichia coli E128010]
 gi|323170464|gb|EFZ56114.1| diguanylate cyclase domain protein [Escherichia coli LT-68]
 gi|323178353|gb|EFZ63931.1| diguanylate cyclase domain protein [Escherichia coli 1180]
 gi|323184790|gb|EFZ70161.1| diguanylate cyclase domain protein [Escherichia coli 1357]
 gi|323945285|gb|EGB41341.1| diguanylate cyclase domain-containing protein [Escherichia coli
           H120]
 gi|331065956|gb|EGI37840.1| protein AdrA [Escherichia coli TA271]
 gi|331076109|gb|EGI47391.1| protein AdrA [Escherichia coli H591]
 gi|332103881|gb|EGJ07227.1| diguanylate cyclase AdrA [Shigella sp. D9]
          Length = 371

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVVYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      +R+ +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVREGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|296161074|ref|ZP_06843884.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. Ch1-1]
 gi|295888597|gb|EFG68405.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. Ch1-1]
          Length = 432

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 5/175 (2%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQIND 144
             + +       + + +  D L+GL N   F+  +      ++ LS+   DID+FK+IND
Sbjct: 257 RDITDRARQMALLKKQAVTDALTGLPNRREFLEFVDKVLGTDDVLSVFILDIDFFKKIND 316

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           ++GH +GD+V+  L+   + +        R GGEEF AA  G+        A +LR+ IE
Sbjct: 317 SYGHDIGDEVLRVLAKVGMSITHESNLFARWGGEEFVAALPGADADLVRRFAEELRQRIE 376

Query: 205 NSQINIS-SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
                 +     I  T+S G+  R   E  +  ++ RAD+ALY AKK GRNRV  
Sbjct: 377 QQDFEHAWHLKPIPFTVSIGVVTRAEGERDVDALMKRADRALYRAKKLGRNRVEV 431


>gi|187730193|ref|YP_001879091.1| diguanylate cyclase AdrA [Shigella boydii CDC 3083-94]
 gi|187427185|gb|ACD06459.1| MASE2 domain/diguanylate cyclase [Shigella boydii CDC 3083-94]
          Length = 366

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 137 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVVYPLLFGWVSYQTATKLAE 196

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 197 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 256

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      +R+ +   ++
Sbjct: 257 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVREGLNTLRL 316

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 317 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 364


>gi|119477934|ref|ZP_01618034.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) and Response Regulator
           [marine gamma proteobacterium HTCC2143]
 gi|119448847|gb|EAW30089.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) and Response Regulator
           [marine gamma proteobacterium HTCC2143]
          Length = 722

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 11/189 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136
           Y +   + E   +   I+  +  D L+ L N + F       I      N +L+++F D+
Sbjct: 267 YGTARDITERLEAEAFINFQAYHDLLTRLPNRALFKDRLSLAIEQAQRSNTQLAVMFIDL 326

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-L 195
           D FK IND+ GH VGD+++  ++ +L         + R GG+EF       ++  AAI +
Sbjct: 327 DRFKIINDSLGHSVGDRLLQAVAGRLQGCIRKGDTLSRFGGDEFTLLLPDVNDISAAIHI 386

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
           A  +   ++  Q        +HI  S GIA      + I  +I  AD A+Y  KK+G++ 
Sbjct: 387 AEKILSSLK--QPFDLIDHQVHIGASIGIALSADADQGIDALIKNADIAMYRVKKTGKDG 444

Query: 255 VVCFSDIEN 263
              F++  +
Sbjct: 445 YQFFTNEMH 453


>gi|114321799|ref|YP_743482.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228193|gb|ABI57992.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 559

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 89/174 (51%), Gaps = 8/174 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L          SR D L+G+ N  A+   L         +   L++VFFD+D+FK IN
Sbjct: 363 RQLRERLADARASSREDRLTGVPNRRAWEERLDYEFARWQRHRRPLALVFFDVDHFKLIN 422

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+ +A ++ ++        F+ R GGEEF A    ++ +EAA +A+ + + +
Sbjct: 423 DRLGHAAGDQALAQIAGRIHRRLRRSDFLARYGGEEFVALLPETTSEEAAQVADAVLQGL 482

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                    G    +T SAG+A     +  + ++ RADQALY+AK  GR+RV  
Sbjct: 483 REDGFEY-DGVDYSVTASAGVAGFTADDGPAAVLKRADQALYLAKSGGRDRVCV 535


>gi|323183939|gb|EFZ69326.1| cellulose synthesis regulatory protein [Escherichia coli 1357]
          Length = 558

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 536 LADRRLYLAKQAGRNRVCA 554


>gi|289624128|ref|ZP_06457082.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330865826|gb|EGH00535.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 712

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 95/197 (48%), Gaps = 14/197 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           ++++  +  S++++L   Y ++ + +  D L+GLLN      ++          ++ L +
Sbjct: 254 AMVMTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVEGMLLRKEQTDKYLVV 310

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQ 190
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF     G    +
Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           +AA +A  L + +   +     G  I +  S GIA        +  ++  AD A+Y AK+
Sbjct: 371 QAAKIAEKLIERVSGRRQ--VDGVDITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKR 428

Query: 250 SGRNRVVCFSDIENNTC 266
           +GR +   +    N   
Sbjct: 429 AGRQQYRFYDQNMNGRA 445


>gi|229152247|ref|ZP_04280440.1| Sensory box/GGDEF family protein [Bacillus cereus m1550]
 gi|228631209|gb|EEK87845.1| Sensory box/GGDEF family protein [Bacillus cereus m1550]
          Length = 431

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          +EK++I+ FDID FK +
Sbjct: 255 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTV 314

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 315 NDTYGHDFGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 374

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q    S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 375 IETKQFTGIS----KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 426


>gi|224369189|ref|YP_002603353.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223691906|gb|ACN15189.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 305

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 7/185 (3%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
            + +E     +++ +L+  D L+GL N   F       I     Y+  LS++  DID FK
Sbjct: 121 RLKREHAKMVDKLEELAITDGLTGLYNSRHFFCQLKAEIERYTRYHHPLSVLLLDIDLFK 180

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
             ND +GH  GDKV+  + + +     +     R GGEEF      +  +EA ++   +R
Sbjct: 181 NYNDTWGHLEGDKVLMTMGEIITSCLRSNDTAYRYGGEEFTVVLPETRVEEACLVGERIR 240

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            I+           +  +TIS G  +    + + + I RAD+A+Y +KK+GR+++ C   
Sbjct: 241 GILSQRVFTPEKEKTAKVTISIGATQFSTSDTLESFIKRADKAMYDSKKAGRDQLTCLPA 300

Query: 261 IENNT 265
            E  T
Sbjct: 301 PETKT 305


>gi|218682844|ref|ZP_03530445.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 894]
          Length = 600

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 15/207 (7%)

Query: 64  ILVENLSLVIISIT--ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           IL+E   L ++     ++ +LG      + EL  S  +I Q++  D ++ L N   F   
Sbjct: 375 ILLETRKLAVLGAGGEVTGVLG--VSRDVTELNASREKIRQMAFYDPVTSLPNRLLFNER 432

Query: 122 LGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L            +  ++  DID+FK +ND  GHPVGD+++  ++ +L         V R
Sbjct: 433 LQQVVSDASSQRRRTGVMLIDIDHFKVVNDTMGHPVGDQLLCQVAIRLKKSVRDLDTVAR 492

Query: 175 LGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EP 232
           LGG+EFA       +  +   +A  + +  + S   +     ++++ S GIA        
Sbjct: 493 LGGDEFAILLPEIQTTDDLDWVACSILERFKES--FLLDSKEVYVSCSVGIAISPDDSTD 550

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++ ++  AD A+Y+AK+SGRN    +S
Sbjct: 551 VNDLVKYADSAMYLAKRSGRNSFRFYS 577


>gi|167588509|ref|ZP_02380897.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Burkholderia ubonensis Bu]
          Length = 859

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
             + E      RI  L+  D L+GL N +         +S      + ++++  D+D FK
Sbjct: 250 QDITERKAQQGRIEYLANHDALTGLPNRNLLSDRMEQAMSQARRTGQLVAVMVLDLDRFK 309

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            +ND FGH VGD ++  ++ +L         V RLGG+EF    +  S+  +A  +   +
Sbjct: 310 HVNDTFGHSVGDGLLRAVAARLKAAVRDGDTVARLGGDEFVVMLVNLSTPADADAIGRKI 369

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                        G  +H+T S G++          T++  AD ALY AK+ GRN    +
Sbjct: 370 LGTF--VAPFAFDGHDLHVTTSVGVSLCPIDGADAETLLRTADAALYCAKERGRNCYSFY 427

Query: 259 S 259
           +
Sbjct: 428 T 428


>gi|117925193|ref|YP_865810.1| diguanylate cyclase with PAS/PAC sensor [Magnetococcus sp. MC-1]
 gi|117608949|gb|ABK44404.1| diguanylate cyclase with PAS/PAC sensor [Magnetococcus sp. MC-1]
          Length = 564

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 14/184 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + +      ++ +LS  D L+ L+N       L         Y   LSI+  D+D+FK+
Sbjct: 383 DVTDEKRLEQQLRELSTTDGLTKLINRRRMDELLDEELKRAVRYGLNLSILLLDVDHFKK 442

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            ND +GH  GD V+  L+ ++   F    +  R GGEEF      +    A  +A+ LR+
Sbjct: 443 FNDTYGHEQGDHVLIALAAEMKSYFRNIDYPCRYGGEEFFVILPNTDADGAIKVADRLRE 502

Query: 202 IIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +   +++      + +TIS G+A            ++  AD ALYVAK+ GRN+VV  S
Sbjct: 503 RVAEKEVD-----GLRVTISIGVASYPDLSITRPDAMVRAADSALYVAKEQGRNKVVYAS 557

Query: 260 DIEN 263
           + + 
Sbjct: 558 EAKQ 561


>gi|108804911|ref|YP_644848.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rubrobacter xylanophilus DSM 9941]
 gi|108766154|gb|ABG05036.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rubrobacter xylanophilus DSM 9941]
          Length = 545

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 10/176 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQINDNFG 147
                 ++ + + +D L+GLLN + F+  L      S +  +++++ D+D FK+IND FG
Sbjct: 109 RRALEEQLLREALMDPLTGLLNRTLFLDRLEHAACRSRHAAIALLYMDLDGFKEINDTFG 168

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+V+  ++ +L           R+GG+EF      S   EA  +A   R+++E+ +
Sbjct: 169 HEAGDEVLREVARRLRSGLRPGDTAARIGGDEFGILLEDSRASEALRVA---RRLLEDLR 225

Query: 208 INISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             I++G   + +  S GIA  R        ++ RAD A+Y AK+ G+NR   F   
Sbjct: 226 EPIAAGERRVCVAASVGIAAGRGEDRGALHLMRRADLAMYRAKQRGKNRCEVFDPA 281


>gi|188493935|ref|ZP_03001205.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 53638]
 gi|188489134|gb|EDU64237.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 53638]
          Length = 558

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 536 LADRRLYLAKQAGRNRVCA 554


>gi|313679060|ref|YP_004056799.1| diguanylate cyclase/phosphodiesterase with pas/pac and gaf
           sensor(s) [Oceanithermus profundus DSM 14977]
 gi|313151775|gb|ADR35626.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Oceanithermus profundus DSM 14977]
          Length = 1034

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 9/172 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDID 137
            +S   + E  +   +I  ++  D L+GL N       +     +       + V+ D+D
Sbjct: 595 LVSARDITEHKVYEAQIEHMAYYDALTGLANRRMLRERVEEAIRELGGGGGFAFVYIDLD 654

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND  GH +GD ++  ++ +L    G    + RLGG+EF   A    ++    LA 
Sbjct: 655 RFKNVNDTLGHDIGDALLVQVARRLEEQTGPGDVLARLGGDEFGLLARRDDQEGVLELAQ 714

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAK 248
            L + +         G  IH++ SAGIA      E    ++  AD A+Y AK
Sbjct: 715 RLIQALR--PPFNVEGHHIHVSGSAGIALYPTDGETFEQLLRHADIAMYRAK 764


>gi|256830904|ref|YP_003159632.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
 gi|256580080|gb|ACU91216.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
          Length = 542

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 66/273 (24%), Positives = 119/273 (43%), Gaps = 24/273 (8%)

Query: 16  EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPF---------YGLEYILV 66
           +K + S      ++  S    + I  V+  A +      LT           Y     L 
Sbjct: 268 QKGIASIRYAMILVISSGLIVLVILNVLLQAVVLRPLQKLTNHASRLRQEEDYAQRLDLR 327

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN 126
               + +++ ++  ++  I     ++L  +  +++ LS  D L+G+ N   F  SL    
Sbjct: 328 RGDEVGVLADSLDNMVQTIRERT-EDLKRANEQLTLLSMRDGLTGIPNRRMFDDSLKQEW 386

Query: 127 E-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGE 178
                    +SI+  D+D+FK  ND  GH  GD+ +  ++  L          V R GGE
Sbjct: 387 RRAMRDKTPVSIILGDVDFFKDYNDAHGHLQGDQCLIAVAAVLQQQMNRPADLVARFGGE 446

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHITISAGIAER-----CHKEP 232
           EFA     +    A  +A  LR+ I +  +    S  +  +T+S G+A          E 
Sbjct: 447 EFAIILADTGTDGAEHVAQSLRQAILDLHLEHGHSDAAPCLTMSFGVASMVPQPEDGDEG 506

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           ++ +++RAD+A+Y +K+ GRNRV+ +SD +  +
Sbjct: 507 MAELLHRADRAMYQSKRLGRNRVIVWSDEQPES 539


>gi|163789433|ref|ZP_02183872.1| YhcK [Carnobacterium sp. AT7]
 gi|159875287|gb|EDP69352.1| YhcK [Carnobacterium sp. AT7]
          Length = 369

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 81/230 (35%), Positives = 116/230 (50%), Gaps = 9/230 (3%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI 100
           TV+ I +  ++ +       L+ + +  +S   IS  +  L+       L E  I +   
Sbjct: 134 TVMLILSNTVYTVLTVILIDLKELNLLLISTYWISCILGGLISVYMMDYLTETEIIFKEN 193

Query: 101 SQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
              SR D L+GL N  +F        + L   NE  SI+  DID+FKQ+ND +GH  GD 
Sbjct: 194 RYHSRTDPLTGLNNVRSFEFEFNKAKNKLEKSNENFSIMILDIDHFKQVNDQYGHLEGDL 253

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  L++ L +   +   + R GGEEF+      + +EA   AN LRKI+ENS   + +G
Sbjct: 254 VLKKLAEILKMSQNSNDIISRNGGEEFSVLLNDCNHKEAYEKANALRKIVENSFFILQNG 313

Query: 214 -PSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             SIHITIS GI            I   ADQALY+AK SGRN+V  +S +
Sbjct: 314 FKSIHITISIGITTYNDTTIKFDNIYDHADQALYLAKNSGRNKVCSYSQV 363


>gi|91224928|ref|ZP_01260187.1| hypothetical protein V12G01_10918 [Vibrio alginolyticus 12G01]
 gi|91190174|gb|EAS76444.1| hypothetical protein V12G01_10918 [Vibrio alginolyticus 12G01]
          Length = 815

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 91/190 (47%), Gaps = 13/190 (6%)

Query: 81  LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           L+ YI     +        ++ +++  D L+ L N +  +S L  +        +  + +
Sbjct: 370 LINYICVFEDISVRKAHEEKLQRMAFYDPLTNLPNRTHLLSLLEQHIETGHKNQQTFATL 429

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F DID+FK IND+ GH  GD++++ L+ +L  V      V R+GG+EF           A
Sbjct: 430 FLDIDHFKHINDSMGHFCGDQLLSKLAIRLQDVLHLNAHVARIGGDEFVIILPDIHSDVA 489

Query: 193 AILANDLRKIIE--NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
             L   +  I+       ++++  S+ ++ S GIA      +   T++  AD A+Y+AKK
Sbjct: 490 --LLETVGDILSVFQQPFDLANHDSLRVSTSIGIALYPRDGQDSETLLKNADTAMYLAKK 547

Query: 250 SGRNRVVCFS 259
           +GRN    +S
Sbjct: 548 NGRNGYAFYS 557


>gi|301327744|ref|ZP_07220948.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|300845706|gb|EFK73466.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|320198646|gb|EFW73246.1| hypothetical protein ECoL_04070 [Escherichia coli EC4100B]
          Length = 558

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 536 LADRRLYLAKQAGRNRVCA 554


>gi|289626820|ref|ZP_06459774.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|330868820|gb|EGH03529.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 527

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 91/205 (44%), Gaps = 20/205 (9%)

Query: 81  LLGYISGSILKE---------LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124
           L+G+I   I  E         L      +  ++  D L+GL N   F             
Sbjct: 301 LIGHIHSRIRAEDQLLDSQAALIQLNQHLEFIASEDKLTGLANRRRFDQFLEVEFKRARR 360

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAA 183
               LS++  D D+FK+ ND++GH  GD+ +  L+  +      P     R GGEE A  
Sbjct: 361 ERSLLSLILIDADHFKRYNDHYGHLAGDECLVALARVVEQCIRRPGDVAARYGGEEIAVV 420

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRA 240
             G+ E  A  +A ++ + I + QI   +     +T+S G+A     +      ++I  A
Sbjct: 421 LPGTDESSARQVAENILQAIRDEQIEHPASSFGIVTVSLGVATFVGTDRQLDQRSLIELA 480

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D+ALY AK  GRNRV   S+I  +T
Sbjct: 481 DRALYAAKSQGRNRVNVASEIATST 505


>gi|269961820|ref|ZP_06176177.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833398|gb|EEZ87500.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 543

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 55/173 (31%), Positives = 89/173 (51%), Gaps = 11/173 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           +K L  +  +++ L+  D L+ L N  A I+ +         ++   S++  D+DYFK +
Sbjct: 369 VKLLNENNQKLTWLAMYDPLTNLFNRRALINQVHQELVNKAMHSHSTSLILIDLDYFKAV 428

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH VGD+V+  ++D L         + R GGEEF      +S +++  +A +L++ 
Sbjct: 429 NDTFGHDVGDQVLMHVADFLSANVRKQDLIARWGGEEFVILLRDTSIEQSEQIATNLQEK 488

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +          P   +T SAG+A     +    +I  AD+ALY AKKSGRN V
Sbjct: 489 MTLENF----SPVTSMTFSAGVATLSAGQSFDDLIANADKALYTAKKSGRNCV 537


>gi|253998253|ref|YP_003050316.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Methylovorus sp. SIP3-4]
 gi|253984932|gb|ACT49789.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylovorus sp. SIP3-4]
          Length = 984

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 55/211 (26%), Positives = 99/211 (46%), Gaps = 13/211 (6%)

Query: 66  VENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
            E ++L  ++     ++ Y+   + + E+  S +R+++L   D L+GL N       L  
Sbjct: 514 AEWVTLTAVNNEEGKVINYVGVFADISEIKHSQSRLNELVNRDPLTGLPNRRLMHELLDH 573

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                     +++++F D+D FK IND  GH +GDK++  +S ++         V RLGG
Sbjct: 574 AIKYAEREQNEIALLFVDLDRFKAINDTLGHQMGDKLLFEVSQRIRAAVRDSDAVARLGG 633

Query: 178 EEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           +EF        E ++AA +A  +   ++N    +  G  + I+ S GI+        +  
Sbjct: 634 DEFIVMMDVLREREDAAKVAKKIISSLQNE--FLIDGRELFISASVGISVYPDDSLDVDG 691

Query: 236 IIYRADQALYVAKKSGRNRVVCFS-DIENNT 265
           +I  AD A+Y  K  G+N    +S D+  N 
Sbjct: 692 LIKAADIAMYQVKNKGKNNHCFYSADLSQNA 722


>gi|228941196|ref|ZP_04103749.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974128|ref|ZP_04134698.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228785468|gb|EEM33477.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818355|gb|EEM64427.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 415

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ +D L+ + N   F   L          +EK++I+ FDID FK +
Sbjct: 239 ITELDEIYQEQERLAMVDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTV 298

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 299 NDTYGHDFGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 358

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q    S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 359 IETKQFTGIS----KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 410


>gi|333010824|gb|EGK30250.1| diguanylate cyclase domain protein [Shigella flexneri K-272]
 gi|333021323|gb|EGK40576.1| diguanylate cyclase domain protein [Shigella flexneri K-227]
          Length = 371

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 107/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVVYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         YN   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRYNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      +R+ +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVREGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|317052641|ref|YP_004113757.1| diguanylate cyclase [Desulfurispirillum indicum S5]
 gi|316947725|gb|ADU67201.1| diguanylate cyclase [Desulfurispirillum indicum S5]
          Length = 551

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 64/184 (34%), Positives = 91/184 (49%), Gaps = 13/184 (7%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVF 133
           L+  ++  + +        +S+L   D L+GL NHS     L           + LS+  
Sbjct: 365 LVAAVTVRVARARM-----LSELMARDSLTGLFNHSRIKEQLVIELARAKRSGKPLSVAM 419

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK +ND +GH VGD+VI  L+  L         VGR GGEEFAA         A 
Sbjct: 420 LDMDKFKTVNDTYGHGVGDRVIKTLAHLLQQRARQSDTVGRYGGEEFAAILPDCDRDAAW 479

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            + +D+R+        +S G   H+T+SAGIA   H +   T++  AD+ALY AK +GRN
Sbjct: 480 KIVDDIRQRFGQVSF-VSGGREFHVTLSAGIAASSHYDDSETLLVAADEALYHAKHTGRN 538

Query: 254 RVVC 257
           RV  
Sbjct: 539 RVCM 542


>gi|254457441|ref|ZP_05070869.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207086233|gb|EDZ63517.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 369

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 71/251 (28%), Positives = 117/251 (46%), Gaps = 19/251 (7%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIF---LFYIGLTPFYGLEYIL-----VENLS 70
            E ++ +   +Y  IF+   ++ + FI  +    L YI  T    L Y +     V +  
Sbjct: 118 FEGYTTYQTELYLIIFWVFTVSGLKFIHALLSGLLIYISATLSAYLIYPMNTEAFVLHSF 177

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSLG 123
            +I +++  +L GY+  S  K +F+    + +++  D L+GL N +         +    
Sbjct: 178 WMIAALSFGILSGYLLESSQKTIFLKKEELEKIAITDKLTGLYNRTMSDKVVKDELEKSK 237

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            Y     ++  DIDYFK +ND +GH VGD V+   ++ L     +   + R GGEEF   
Sbjct: 238 RYGHSFGLMMLDIDYFKNVNDTYGHLVGDDVLVEFTNILKKYTRSTDTLIRWGGEEFIII 297

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
           +L   +     LA  +RK +E              T+S G+      + I++I+ RADQA
Sbjct: 298 SLEVDKDGLMTLAEHIRKKVEGHNFKTVGTK----TVSIGVTLNKDNDDINSIVQRADQA 353

Query: 244 LYVAKKSGRNR 254
           LY +K SGRNR
Sbjct: 354 LYKSKNSGRNR 364


>gi|77458750|ref|YP_348256.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens
           Pf0-1]
 gi|77382753|gb|ABA74266.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens
           Pf0-1]
          Length = 693

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 63/280 (22%), Positives = 119/280 (42%), Gaps = 27/280 (9%)

Query: 10  SIWLCHEKNLESFSPHT--FMIYFSIFFSIFIATVIFIANIFLFY-------IGLTPFYG 60
           ++W+     L   SP+   F    +I   + I  + +       +         L+   G
Sbjct: 156 ALWIAF--RLRQHSPYVRLFRAGAAIVMGVAIVGMHYTGMAAARFPDGSFCGAALSGLNG 213

Query: 61  ---LEYILVENLSLVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
                 +L+  L+++ I++  S+L   L   +  +   L ++   ++QL+  D L+GL N
Sbjct: 214 NGLDNLVLITTLAVLAIALLTSILDARLEARTADLAHSLTVANRELTQLALHDPLTGLPN 273

Query: 115 HSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
                  +    +K        +++F D+D FK +ND FGH +GD+++  ++ +L     
Sbjct: 274 RMLLDDRINQAMKKVNEQGGCFALMFIDLDGFKPVNDAFGHHMGDQLLREVAVRLREDLR 333

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
           +   + R+GG+EF      +   +A  LA     +I  S     +   + I+ S GIA  
Sbjct: 334 SLDTLARIGGDEFVLLVRLAEPNDALGLAARQVGLIAQS--FRVAEHDLQISASVGIALY 391

Query: 228 C-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             + E    ++  AD A+Y AK  G+N    F    N+  
Sbjct: 392 PGNGESAQELLMNADAAMYHAKGGGKNGYSFFDVSMNSNA 431


>gi|330721536|gb|EGG99571.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [gamma proteobacterium IMCC2047]
          Length = 513

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 17/192 (8%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           L  +S   + E     + I  L+  D L+ L N       L         +N   +++F 
Sbjct: 47  LCILSVKDITERKKQEDVIQHLAYHDSLTNLPNRRLLQDRLQQALVSANRHNHLGAVLFI 106

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL------GSS 188
           D+D FK+IND+ GH  GD+V+  L+ ++         V R+GG+EF             +
Sbjct: 107 DLDNFKKINDSEGHSGGDQVLKTLAWRITNHLRAEDTVARIGGDEFVVLLPFLSTDASVA 166

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYV 246
            Q A  LAN L  ++  ++   ++   + +T S G+             +I  AD A+Y 
Sbjct: 167 RQRAEDLANKLLGLV--TRPIQTNKQPLQVTASIGVVNFPGNAKNDAEKLISFADTAMYK 224

Query: 247 AKKSGRNRVVCF 258
           AK++GRN VV F
Sbjct: 225 AKQNGRNGVVYF 236


>gi|300822275|ref|ZP_07102416.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
 gi|300525158|gb|EFK46227.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
          Length = 436

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 234 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 293

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 294 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 353

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 354 CVILPGASLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 413

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 414 LADRRLYLAKQAGRNRV-FASD 434


>gi|288941878|ref|YP_003444118.1| response regulator receiver modulated diguanylate cyclase
           [Allochromatium vinosum DSM 180]
 gi|288897250|gb|ADC63086.1| response regulator receiver modulated diguanylate cyclase
           [Allochromatium vinosum DSM 180]
          Length = 303

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 88/191 (46%), Gaps = 14/191 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           +++   +   I   L +  +R+ Q++  D L+ + N   F   L          ++ LS+
Sbjct: 114 AIVRARVRNQI--HLKLRTDRLEQVAMQDGLTQIPNRRRFDQKLREEWARLIRPDQSLSL 171

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQ 190
           +  DID FK  ND++GH  GD+ +  ++  L  V       V R GGEEFA     + E 
Sbjct: 172 LMIDIDQFKPYNDHYGHGAGDECLRQVAQALYQVPQRPADLVARYGGEEFAVVLPETDET 231

Query: 191 EAAILANDLRKIIENSQINIS-SGPSIHITISAGIAE---RCHKEPISTIIYRADQALYV 246
            A  LA  L + ++   I    S  +  +++S G+A    R  +     +   AD+ALY 
Sbjct: 232 GAEHLARRLLESVQALGIEHDYSDVAPQVSVSIGVATHSPRRPRSDAEALKQSADRALYQ 291

Query: 247 AKKSGRNRVVC 257
           AK  GRNRV  
Sbjct: 292 AKSQGRNRVSF 302


>gi|224368520|ref|YP_002602683.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223691236|gb|ACN14519.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 381

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 18/208 (8%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           ++L+ +L +    +  S++ G         L  +Y  I Q + ID L+ + N  +F+ ++
Sbjct: 177 FLLMGHLMIGAAGLCCSIIFG-------SRLGKAYTTIQQQALIDALTEIPNRRSFMETI 229

Query: 123 GSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGR 174
                      + LSI+  DID FK  ND +GH  GD+ +  ++  +         F  R
Sbjct: 230 SRELKRSHRLKKPLSIILCDIDNFKLYNDTYGHSRGDRCLKRIALGIKNTLTRPVDFCAR 289

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKE-- 231
            GGEEF      +S + A  +A  +   I    I          +TIS G++        
Sbjct: 290 YGGEEFVVLLPDTSMKGAGHVAEKICLSIHGMNIAHERSLPFKAVTISLGVSTLDGAAFL 349

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++  AD ALY AK++GRNRV  F+
Sbjct: 350 SSDELLKNADMALYKAKENGRNRVELFN 377


>gi|119486748|ref|ZP_01620723.1| regulatory component of sensory transduction system [Lyngbya sp.
           PCC 8106]
 gi|119456041|gb|EAW37174.1| regulatory component of sensory transduction system [Lyngbya sp.
           PCC 8106]
          Length = 456

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 91/176 (51%), Gaps = 10/176 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDN 145
           L  + + + Q +  D L+ + N  AF   L    ++       L+++  DIDYFK+ ND+
Sbjct: 278 LHETNSILYQQAITDNLTKISNRRAFDVYLKQEWKRAKREALSLALMMIDIDYFKRYNDH 337

Query: 146 FGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD+ +  ++  +   V     FV R GGEEFA     +  + A  +A+ ++K I 
Sbjct: 338 YGHEAGDRCLYTVAQTIRQAVKRPSDFVARYGGEEFAVILPNTEREGAETVADSIQKAIH 397

Query: 205 NSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + ++  +  P S  IT+S GI+ +    E  + +I  AD ALY AK  GR+R+  +
Sbjct: 398 DFKLPHAQSPISSCITLSIGISIQIPTSEDFTILIQTADHALYEAKHQGRDRIQVY 453


>gi|91203573|emb|CAJ71226.1| conserved hypothetical response regulator protein [Candidatus
           Kuenenia stuttgartiensis]
          Length = 685

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 9/181 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
              + E+  S +++  L+  D L+ L N   F       +      + K +++F D+D F
Sbjct: 245 ARDITEIKTSQSQLVFLADHDPLTCLFNRRRFKEELELRLLEAQRNHIKGALLFLDLDNF 304

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND  GH  GD+++  LS  L         + RLGG+EFA     + E++A  ++  L
Sbjct: 305 KYVNDTLGHQHGDELLIKLSCILKERLRQTDILARLGGDEFAVILPNTEEEQAQHISKQL 364

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            ++  N  + + S   +HIT+S GIA    H +   T++  AD A+Y AK  GR+R   F
Sbjct: 365 VELTRNC-LALDSLNPLHITVSIGIAMFPAHGDTAETLLANADMAMYQAKDEGRDRGCIF 423

Query: 259 S 259
           S
Sbjct: 424 S 424


>gi|226940890|ref|YP_002795964.1| hypothetical protein LHK_01971 [Laribacter hongkongensis HLHK9]
 gi|226715817|gb|ACO74955.1| GGDEF domain protein [Laribacter hongkongensis HLHK9]
          Length = 879

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 13/186 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---------S 130
           L  GY++   + E     + + + +  D L+GL N  +++        +          +
Sbjct: 683 LWHGYLN--DISERKAHEDDLVKQASTDGLTGLANRRSWLVHANRELTRCRRYPDEADCA 740

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +V  DID+FK++ND+ GH VGD+V+  L+ ++         +GR+GGEEFA     +S+ 
Sbjct: 741 VVMLDIDHFKRVNDSHGHAVGDQVLQELARRMQAGLRETDCLGRMGGEEFAILLPQTSQD 800

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKK 249
            A + A  L + I        +G  + +TIS G+++    +  +   + RAD ALY AK 
Sbjct: 801 GACLFAERLCRKIAGVPFATEAGALV-VTISLGVSQMQSDDASVDCALARADGALYAAKS 859

Query: 250 SGRNRV 255
            GRNRV
Sbjct: 860 GGRNRV 865


>gi|206970971|ref|ZP_03231922.1| putative sensory box/GGDEF family protein [Bacillus cereus AH1134]
 gi|206733743|gb|EDZ50914.1| putative sensory box/GGDEF family protein [Bacillus cereus AH1134]
          Length = 430

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          +EK++I+ FDID FK +
Sbjct: 254 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTV 313

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 314 NDTYGHDFGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 373

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q    S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 374 IETKQFTGIS----KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 425


>gi|170725163|ref|YP_001759189.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169810510|gb|ACA85094.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
          Length = 538

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 94/225 (41%), Gaps = 21/225 (9%)

Query: 61  LEYILVENLSL-VIISITISLLLGYISGSILKE-------LFISYNRISQLSRIDCLSGL 112
           L YI+    SL V++       L   S  I +E       L  +  ++  LS+ D L+ +
Sbjct: 309 LPYIIAILGSLLVLLGALYIYALMRRSALIEREVKQRTHDLNEAKQKLEALSQTDSLTKI 368

Query: 113 LNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VV 164
            N   F  SL             + ++  DID+FK  ND +GH  GD+ +  ++  L   
Sbjct: 369 SNRRCFDESLQACWQHAIREKSSIGLIMIDIDHFKLYNDTYGHLAGDQCLREVASALNQT 428

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAG 223
           +      V R GGEEF      +  ++    A   +  IE   +   S P S ++T+S G
Sbjct: 429 LNRKTDLVARYGGEEFVVLLPHT--RDCISPAKRCQINIEQLALPHESSPTSEYVTVSVG 486

Query: 224 IAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           +   C      +      AD+ALY AKKSGRNRV  F        
Sbjct: 487 VTSICPDKCSDMQAFTAEADRALYQAKKSGRNRVQVFEHERTEQA 531


>gi|330969198|gb|EGH69264.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 509

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 12/192 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIV 132
           L L ++    L+    + + ++ L+  D L+GL N                   + LS++
Sbjct: 312 LWLTWLLCRELRRRHRAEDALASLAATDGLTGLDNRRQLDEAMETEWARAQRSGKPLSLL 371

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQE 191
             D+D+FK  N+  GH  GD+ +  ++  +      P   V R GGEEF      +    
Sbjct: 372 MIDVDHFKAFNERHGHQGGDEALRLIAQTISYCIRRPGDRVARYGGEEFVVVLPETDLPG 431

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKK 249
           A ++A  +RK  E+  +  ++     IT+S G+A       + +      AD+ALY AK 
Sbjct: 432 AMLIAEKIRKAAESLPLFRNAEH--PITVSIGVASEVVRQGDKLEAFFGVADKALYQAKD 489

Query: 250 SGRNRVVCFSDI 261
           +GRNRV   S +
Sbjct: 490 NGRNRVEYRSSV 501


>gi|89093635|ref|ZP_01166582.1| putative signal transduction protein [Oceanospirillum sp. MED92]
 gi|89082031|gb|EAR61256.1| putative signal transduction protein [Oceanospirillum sp. MED92]
          Length = 478

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 66/215 (30%), Positives = 106/215 (49%), Gaps = 19/215 (8%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +G+ + L++ L  ++ S+T   L  Y          +   R+ Q S  D L+GL N   F
Sbjct: 264 HGVPHALLD-LWGMLASLTFGALSAYTC--------VLMRRLYQRSVTDSLTGLYNRQHF 314

Query: 119 I-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                   S    YN+ L+++  DID FKQIND FGH  GD V+   S  +         
Sbjct: 315 KFRAEQEASRAVRYNQPLTMLMIDIDQFKQINDKFGHQTGDTVLQQASQYIRDNLRESDL 374

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
           +GR GGEEF      S  ++A   A+ +R  ++ S      G  + I++S G+A++    
Sbjct: 375 LGRYGGEEFIVLLPQSDLEQATQCADRIRDSLDKSIFIY--GSLVSISVSVGLAQQSPDT 432

Query: 232 PI-STIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            +   ++ +ADQALY AK++GRNR+  ++  E  +
Sbjct: 433 FVYDELVSQADQALYTAKRNGRNRIEIYAATEEGS 467


>gi|34580736|ref|ZP_00142216.1| regulatory components of sensory transduction system [Rickettsia
           sibirica 246]
 gi|28262121|gb|EAA25625.1| regulatory components of sensory transduction system [Rickettsia
           sibirica 246]
          Length = 450

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 88/191 (46%), Gaps = 13/191 (6%)

Query: 79  SLLLGYISGSILKELFISYNR--ISQ---LSRIDCLSGLLNHSAFISSLGSYNEK----- 128
           S LL  I   + ++ +    R  + Q   L+  D L+GL N   F   L    EK     
Sbjct: 258 SELLARIRTQLRRKQYQDNLRNDLEQSVNLAVKDGLTGLFNRRYFDIHLKQIIEKTNKES 317

Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             L ++  DID FK +ND +GH  GDKV+  +S  L         + R GGEEF      
Sbjct: 318 IKLYLLMCDIDNFKHVNDTYGHQAGDKVLTIVSRILKNTLRVTDLIARFGGEEFTILLTD 377

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALY 245
               +A   A  +R  IE    +I      +  TIS G+ +    E I + I RAD+A+Y
Sbjct: 378 IDISKAIETAERVRVKIEYMNFHIEDQIEPLKTTISIGVTKYKKAESIESFIERADKAMY 437

Query: 246 VAKKSGRNRVV 256
            AK +G+N+VV
Sbjct: 438 EAKTTGKNKVV 448


>gi|256017851|ref|ZP_05431716.1| diguanylate cyclase [Shigella sp. D9]
          Length = 558

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 536 LADRRLYLAKQAGRNRVCA 554


>gi|193065198|ref|ZP_03046271.1| MASE2 domain/diguanylate cyclase [Escherichia coli E22]
 gi|192927172|gb|EDV81793.1| MASE2 domain/diguanylate cyclase [Escherichia coli E22]
          Length = 371

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVVYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      +R+ +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVREGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|324327415|gb|ADY22675.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 825

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 52/200 (26%), Positives = 97/200 (48%), Gaps = 10/200 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121
           +++V I I       YI    +  +    + I+ L+  D ++G+ N   F       I  
Sbjct: 366 VTIVPIMIEGQTFGSYIMVKDITRMKQQQDEINYLAFHDTVTGIGNRIFFQQELDRSIER 425

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
           +    +K  +++ D++ FK IND  GH +GDKV+  ++++        + + R+GG+EFA
Sbjct: 426 VQKTQDKFGLLYIDLNRFKNINDTLGHAIGDKVLKEVANRFRTCLPPTIHIARIGGDEFA 485

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRA 240
                 +EQ+   L   L +I E  +  + +  S ++++S GIA         +T++  A
Sbjct: 486 IIVHNKTEQQLLDLCERLFRITE--EPFVINQHSFYLSLSIGIALYPFGGTNATTLLQHA 543

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D A+Y AK+ G N V  + +
Sbjct: 544 DIAMYSAKEEGSNAVCIYDE 563


>gi|264678525|ref|YP_003278432.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262209038|gb|ACY33136.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 255

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 10/172 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+GL N   F S +    ++++       ++  DID+FKQIND  GH  GD V+
Sbjct: 44  LSLRDPLTGLANRRHFRSVIEREIDRVARSGETALLLMLDIDHFKQINDEHGHIAGDMVL 103

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L  +      + R GGEEFA         +   +A  LR+ IE++ I +SSG S
Sbjct: 104 QSVAQTLSEIIRPMDTLARFGGEEFAIVLPVCPAHQGRAVAERLRQAIESNSIALSSGQS 163

Query: 216 IHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           + +T+S G   A++  +        RAD+ LY+AK +GRN V    D  ++T
Sbjct: 164 LKVTVSIGGVYAQQWIRSTAQLWTERADRQLYLAKSAGRNCVCV-EDPPDST 214


>gi|317048618|ref|YP_004116266.1| diguanylate cyclase [Pantoea sp. At-9b]
 gi|316950235|gb|ADU69710.1| diguanylate cyclase [Pantoea sp. At-9b]
          Length = 550

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 53/197 (26%), Positives = 98/197 (49%), Gaps = 9/197 (4%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------ 122
           LS+ ++ I +  +   +   +++       R++  +  D L+ LLN SAF          
Sbjct: 351 LSMWLLFILMLAVAHQVIFRLVRRQDELSERLTWRANYDGLTRLLNRSAFFEQFVAQAAH 410

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                  LS++  D+D+FK++ND +GH  GD+ +  ++  +          GR+GGEEF 
Sbjct: 411 CQQLQRPLSVIQLDVDHFKKVNDTWGHHAGDQALIRVASVISHTLRKYDVAGRIGGEEFC 470

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYR 239
                ++  EA+ +A  +R  +    I +++  + +IT+SAG+  +E        ++  +
Sbjct: 471 IVLPETTLAEASAVAERIRARLAAKTILVNASTTFNITLSAGVTSSEEQGDYDAESLQAK 530

Query: 240 ADQALYVAKKSGRNRVV 256
           AD  LY+AK +GRNRV 
Sbjct: 531 ADSRLYLAKTNGRNRVC 547


>gi|126661523|ref|ZP_01732571.1| regulatory components of sensory transduction system [Cyanothece
           sp. CCY0110]
 gi|126617189|gb|EAZ88010.1| regulatory components of sensory transduction system [Cyanothece
           sp. CCY0110]
          Length = 458

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 11/184 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDID 137
           I+   + E       +++ + ID L+G+ N   F               + LSI+ FD+D
Sbjct: 272 ITVRNITERKKRELELNRRATIDGLTGIYNRQTFDQNLIKEWGRARREKQTLSIILFDVD 331

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           YFK  ND++GH  GD  +  ++  +  +   +  FV R GGEEF      + +Q A I+ 
Sbjct: 332 YFKLYNDHYGHQAGDDCLKQIAQTVKKILNRSVDFVARYGGEEFVVILPNTDQQGAIIIV 391

Query: 197 NDLRKIIENSQINISSGP-SIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRN 253
            +++  I    I       S  ++IS GIA          + +I  AD+ALY AK+ GRN
Sbjct: 392 ENIQHAIYTLAIPHKESKVSELVSISVGIASIIPRSASSPADLINLADKALYRAKQQGRN 451

Query: 254 RVVC 257
           R   
Sbjct: 452 RYSV 455


>gi|191166731|ref|ZP_03028558.1| MASE2 domain/diguanylate cyclase [Escherichia coli B7A]
 gi|194428836|ref|ZP_03061371.1| MASE2 domain/diguanylate cyclase [Escherichia coli B171]
 gi|190903242|gb|EDV62964.1| MASE2 domain/diguanylate cyclase [Escherichia coli B7A]
 gi|194413139|gb|EDX29426.1| MASE2 domain/diguanylate cyclase [Escherichia coli B171]
          Length = 366

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 137 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVVYPLLFGWVSYQTATKLAE 196

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 197 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 256

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      +R+ +   ++
Sbjct: 257 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVREGLNTLRL 316

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 317 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 364


>gi|313200326|ref|YP_004038984.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Methylovorus sp. MP688]
 gi|312439642|gb|ADQ83748.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylovorus sp. MP688]
          Length = 984

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 55/211 (26%), Positives = 99/211 (46%), Gaps = 13/211 (6%)

Query: 66  VENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
            E ++L  ++     ++ Y+   + + E+  S +R+++L   D L+GL N       L  
Sbjct: 514 AEWVTLTAVNNEEGKVINYVGVFADISEIKHSQSRLNELVNRDPLTGLPNRRLMHELLDH 573

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                     +++++F D+D FK IND  GH +GDK++  +S ++         V RLGG
Sbjct: 574 AIKYAEREQNEIALLFVDLDRFKAINDTLGHQMGDKLLFEVSQRIRAAVRDSDAVARLGG 633

Query: 178 EEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           +EF        E ++AA +A  +   ++N    +  G  + I+ S GI+        +  
Sbjct: 634 DEFIVMMDVLREREDAAKVAKKIISSLQNE--FLIDGRELFISASVGISVYPDDSLDVDG 691

Query: 236 IIYRADQALYVAKKSGRNRVVCFS-DIENNT 265
           +I  AD A+Y  K  G+N    +S D+  N 
Sbjct: 692 LIKAADIAMYQVKNKGKNNHCFYSADLSQNA 722


>gi|261821129|ref|YP_003259235.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
 gi|261605142|gb|ACX87628.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
          Length = 470

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 61/184 (33%), Positives = 90/184 (48%), Gaps = 9/184 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
           Y    +L  LF    ++   S  D L+ LLN     + L          N  LSI   DI
Sbjct: 289 YKINMLLGSLFDEVQKLE--SGKDTLTLLLNRRFLPTILRHEISLTMHSNTPLSIAMIDI 346

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK +ND +GH  GD ++  +++ L        +V R GGEEF    + + +  A  + 
Sbjct: 347 DHFKSVNDTYGHAAGDSILKRIAEILYESTRNSDYVFRYGGEEFMIVLIETPKVAAYTII 406

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LRK I++  I++ +G S+ +TISAGIA          +I  AD ALY AK +GRNR+ 
Sbjct: 407 ERLRKKIQDHTIHLQNGESVTMTISAGIAVYSGHPDYECLIKAADDALYQAKANGRNRIE 466

Query: 257 CFSD 260
              +
Sbjct: 467 YAQE 470


>gi|218439973|ref|YP_002378302.1| diguanylate cyclase [Cyanothece sp. PCC 7424]
 gi|218172701|gb|ACK71434.1| diguanylate cyclase [Cyanothece sp. PCC 7424]
          Length = 547

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 82/180 (45%), Gaps = 12/180 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQI 142
           L +L     R+ +L  +D L+G+ N   F   L             LS++  DIDYFK  
Sbjct: 348 LIKLTQENKRLRKLVYLDELTGIYNRRYFDHYLEREWRRMTREKAPLSLMLLDIDYFKNY 407

Query: 143 NDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH +GD  +  ++  +      +   V R GGEEFA        + A  LA  +R+
Sbjct: 408 NDTYGHQLGDACLKKVAQAIQKSLKRSTDIVARYGGEEFAIIISQCDNKGALFLAEIIRE 467

Query: 202 IIENSQINISSGPS--IHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
            I++  IN  +       +T S G+A      +     +I  AD+ALY +K  GRNRV  
Sbjct: 468 QIKSLAINHKNSQVNLKIVTASIGVATIIPALETQPKMLIQMADEALYQSKHEGRNRVTF 527


>gi|172060868|ref|YP_001808520.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
 gi|171993385|gb|ACB64304.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
          Length = 466

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 102/234 (43%), Gaps = 22/234 (9%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI------LK 91
           ++A  IF    FL        YG+   L    S   I      L+  +S S+      L+
Sbjct: 240 WLAHAIFAGGFFLLS------YGVVQALQTTRSFSAIYRQ-EDLMSRLSESMARTDSALQ 292

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL  +  ++  ++  D ++G  N   FI  +               ++  D+D FK IND
Sbjct: 293 ELRRTNQKLEYMAATDPMTGASNRRQFIGQVEREIVRAERDGTPFCLLALDLDNFKNIND 352

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH +GD+V+  +  Q +        + R+GGEEF A       + A + A  +R  I 
Sbjct: 353 AYGHQIGDEVLRGVVRQCLEAIRPAGALARVGGEEFMALLPEMPLEGARMTAERVRSSIA 412

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S   +     + +T+S G+A+       +  ++   D+ LY AK+ GRNRVV 
Sbjct: 413 SSPFGL-DFKRVQVTVSVGVAQYGVDGSTVDALLRAVDERLYQAKRDGRNRVVA 465


>gi|323180792|gb|EFZ66332.1| cellulose synthesis regulatory protein [Escherichia coli 1180]
          Length = 558

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 536 LADRRLYLAKQAGRNRVCA 554


>gi|158335003|ref|YP_001516175.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158305244|gb|ABW26861.1| diguanylate cyclase (GGDEF domain) [Acaryochloris marina MBIC11017]
          Length = 630

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 11/164 (6%)

Query: 104 SRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           SRID L+ + N  +F          L    + LSI+  D+D+FKQ ND +GH  GD  + 
Sbjct: 466 SRIDGLTSIHNRRSFDESLDKEWRRLRREQQPLSIILCDVDHFKQYNDTYGHQAGDTCLQ 525

Query: 157 FLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGP 214
            ++  +   V      V R GGEEF      +    A  +A  +R  IE  +I   +S  
Sbjct: 526 EVALAIDKSVKRPADMVARYGGEEFVVLLPNTPLPGATHIAEMIRTAIEVLRIPHKTSSA 585

Query: 215 SIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVV 256
           S  +T+S G+A       +  + ++  AD ALY AK+ GRNRV+
Sbjct: 586 SDQVTLSLGVATVIPNTQQTYTELLEAADAALYRAKQQGRNRVI 629


>gi|52080677|ref|YP_079468.1| GGDEF-domain-containing protein [Bacillus licheniformis ATCC 14580]
 gi|52786050|ref|YP_091879.1| YhcK [Bacillus licheniformis ATCC 14580]
 gi|52003888|gb|AAU23830.1| GGDEF-domain containing protein [Bacillus licheniformis ATCC 14580]
 gi|52348552|gb|AAU41186.1| YhcK [Bacillus licheniformis ATCC 14580]
          Length = 362

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 81/257 (31%), Positives = 116/257 (45%), Gaps = 24/257 (9%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE 67
           +L + +  +           +I+ ++  SI I  ++ + + FL  + LT F+ L      
Sbjct: 119 YLILRIMDKDAGTYRKTFALVIFANVAISIVI--LMILHDFFLMKMLLTWFWILS----- 171

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------IS 120
                    TI         S L++      +  + S ID L+GL N   F       IS
Sbjct: 172 ---------TIGGFTSVYIVSYLRKSHFLLKKYEEESSIDYLTGLNNVRQFDAIWNAHIS 222

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           +    NEKLS++  DIDYFK IND +GH  GD ++  L   L     +   V R GGEEF
Sbjct: 223 NAKEKNEKLSLLLIDIDYFKTINDTYGHSNGDAILKELGTILKKSARSEDIVSRNGGEEF 282

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYR 239
           +      S  +AA +A  +RK +E     IS    IHIT+S G+A           +I +
Sbjct: 283 SVILPNCSHSQAAEIAERVRKEVETHTFFISHSKKIHITVSIGVAAFPEVIHSTGELIEK 342

Query: 240 ADQALYVAKKSGRNRVV 256
           ADQ LY AK  GRNRV 
Sbjct: 343 ADQCLYRAKHLGRNRVC 359


>gi|323487725|ref|ZP_08092983.1| response regulator receiver domain-containing protein [Planococcus
           donghaensis MPA1U2]
 gi|323398459|gb|EGA91247.1| response regulator receiver domain-containing protein [Planococcus
           donghaensis MPA1U2]
          Length = 577

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 67/255 (26%), Positives = 111/255 (43%), Gaps = 36/255 (14%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
           ++ + ++I ++++I      L ++G+ P +   Y  +  +  +  +I +SL LG     I
Sbjct: 325 FYMVGWTILLSSIIIQG---LGFLGVIPLHPRIYEDIPAIGAIFEAIFLSLALGDKINII 381

Query: 90  LKE----------------------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE 127
            KE                      L ++   + QL+  D L+ + N       L +   
Sbjct: 382 KKEHQEMQLQLNANLEHKVKERTQQLELAKQELEQLANTDRLTQIPNRLRLDQVLETELR 441

Query: 128 -------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   LSI+  DID+FK +ND FGH +GD V+  ++  L         VGR GGEEF
Sbjct: 442 RAQHDAVPLSIILLDIDHFKSVNDQFGHQIGDIVLTEVAKLLKDHIRAGDTVGRWGGEEF 501

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                 ++  +A  L++ +R+  E              T S G+      + ++T + RA
Sbjct: 502 LIICPDTTIDDAIRLSSKIREQFEQYHFQEVERK----TGSFGVTAYMAGDTLNTFVSRA 557

Query: 241 DQALYVAKKSGRNRV 255
           D ALY AK  GRNRV
Sbjct: 558 DHALYQAKDKGRNRV 572


>gi|288916266|ref|ZP_06410645.1| serine/threonine protein kinase [Frankia sp. EUN1f]
 gi|288352245|gb|EFC86443.1| serine/threonine protein kinase [Frankia sp. EUN1f]
          Length = 1706

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 54/215 (25%), Positives = 89/215 (41%), Gaps = 16/215 (7%)

Query: 59   YGLEYILVENLSLVIISITISLLLGYISGSILK-------ELFISYNRISQLSRIDCLSG 111
            +      +E + LV   + +SL    +  S+ +       +L  +  ++ QLS  D L+G
Sbjct: 1472 HAFSADRLEGIMLVAGQLAVSLDNALMYASLERKVEQRTRQLAAANRQLKQLSVTDPLTG 1531

Query: 112  LLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
            L N                     +++   DID+FK  ND+FGH  GD  +  ++  +  
Sbjct: 1532 LANRRRLDEILDHEWRQARRRGSPIALAMVDIDHFKLYNDHFGHSAGDHCLRLVARCVGR 1591

Query: 165  VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                P+   R GGEEFA     +    AA LA  +   +E          +  +T+S G 
Sbjct: 1592 SAQDPLIAARYGGEEFAVVMPDTDAAGAARLARHICAAVEALAEPHPRVATRVVTVSIGT 1651

Query: 225  A--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                   ++ ++  +  AD ALY AK+ GRNR   
Sbjct: 1652 TALVPTSRDDLAGFVECADAALYRAKRGGRNRAEV 1686


>gi|126668320|ref|ZP_01739279.1| hypothetical protein MELB17_11535 [Marinobacter sp. ELB17]
 gi|126627237|gb|EAZ97875.1| hypothetical protein MELB17_11535 [Marinobacter sp. ELB17]
          Length = 308

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 60/169 (35%), Positives = 85/169 (50%), Gaps = 8/169 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q S  D L+G+ N  A   +L         +NE  S++  D+D+FK +NDN GH VGD
Sbjct: 140 MEQASLTDSLTGIGNKRAMDEALQKAQLLAGRHNETYSLILCDLDHFKAVNDNCGHVVGD 199

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+   ++ L     +   V R GGEEFA     + +  A  +A  +R  I   QI+ S 
Sbjct: 200 IVLKRAAEALESAVRSSDSVYRFGGEEFAVLLPHTDQLAAVDVAERIRLAIAALQID-SE 258

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             S+ +TIS G+A     E     + RAD+ALY AK  GRN    F+ I
Sbjct: 259 EHSVAVTISCGVALHRAGEGSGQWLARADEALYRAKDQGRNCTRVFATI 307


>gi|152994229|ref|YP_001339064.1| PAS/PAC sensor-containing diguanylate cyclase [Marinomonas sp.
           MWYL1]
 gi|150835153|gb|ABR69129.1| diguanylate cyclase with PAS/PAC sensor [Marinomonas sp. MWYL1]
          Length = 469

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 8/177 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
            SI  E F +   + + +  D L+ L N   F              N  L+I+  D+D+F
Sbjct: 282 ASIAIESFRAQEALQKRAYFDHLTELANRGYFFQQCETLLNLSREKNFPLAILMMDVDHF 341

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND FGH  GD V+  L+   + +      + R+GGEEFA     + + EA  +A  L
Sbjct: 342 KKVNDEFGHKTGDLVLQMLAQMSLSILRRDDLIARIGGEEFAILLPFTEKDEALRIAEQL 401

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
           R+ IE+S +       +  T+S G+A R   +  +  I+ +AD+ALY AK +GRN V
Sbjct: 402 RESIESSMVLSLDHQEVVFTVSLGVACRQDGDCTVDDILNKADKALYQAKAAGRNCV 458


>gi|104781933|ref|YP_608431.1| diguanylate cyclase/phosphodiesterase [Pseudomonas entomophila L48]
 gi|95110920|emb|CAK15636.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) [Pseudomonas entomophila L48]
          Length = 696

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 62/285 (21%), Positives = 122/285 (42%), Gaps = 39/285 (13%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY----------- 59
           +W+     L   +P+         F    A V+ IA + + Y G+               
Sbjct: 157 LWIAF--RLRQHTPYVRQ------FRGLAAVVMGIAIVGMHYTGMAAANFPTGSYCGALV 208

Query: 60  ------GLEY-ILVENLSLVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCL 109
                 GL+Y +L+  L+++ +++  S+L   L   +  + + L ++   ++QL+  D L
Sbjct: 209 DGLAGDGLDYLVLITTLAVLSVALLTSVLDARLEARTAELARSLTLANQELTQLALHDTL 268

Query: 110 SGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GL N +     +     +        +++F D+D FK +ND FGH VGD ++  ++ +L
Sbjct: 269 TGLPNRTLLADRIDQAIGRVAEQGGCFALMFIDLDGFKPVNDAFGHHVGDLLLKAVAARL 328

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                +   + R+GG+EF          +A  +A  ++++   S+    +   + +T S 
Sbjct: 329 RGHLHSQDTLARIGGDEFVLLVELGEPDDAMGVA--VKQVNLVSRPFRVAEHDLQLTASL 386

Query: 223 GIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           GI     +      ++  AD A+Y AK +G+N    F    N   
Sbjct: 387 GIVLYPGNGADQHELLRNADAAMYHAKSAGKNGYSFFDASMNTNA 431


>gi|94499999|ref|ZP_01306534.1| probable two-component response regulator [Oceanobacter sp. RED65]
 gi|94427857|gb|EAT12832.1| probable two-component response regulator [Oceanobacter sp. RED65]
          Length = 364

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 74/249 (29%), Positives = 115/249 (46%), Gaps = 23/249 (9%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVI-FIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS 79
           S SP      F I    F AT++ F+   F F   L+P +   +I         I +   
Sbjct: 116 SLSPKPIFTQFYIGSLAFPATLVSFLVEEFRF---LSPLFAATWI-------YFIFLGRR 165

Query: 80  LLLGYISGSILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
               Y     ++        ++ +L+  D L+G+ N   F ++L             LSI
Sbjct: 166 FYNEYQRAFHIEMRLKENQVKLERLNETDTLTGIYNRQYFDNALDMQWDLASRSENSLSI 225

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQ 190
           +F D+D+FK+INDNFGH  GD+V+   +     +       + R GGEEFA     + +Q
Sbjct: 226 LFLDLDHFKKINDNFGHLAGDQVLCHAAHLFSEIARRKTDMIARYGGEEFAIILPATEKQ 285

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAK 248
           +A  LA  +R  IEN+      G  IH+T+S G+       +    T + +ADQALY AK
Sbjct: 286 DALDLAEQIRHAIENTPCRSDQGL-IHLTVSIGVNSVVPSPQGSPVTFLDQADQALYQAK 344

Query: 249 KSGRNRVVC 257
            +GRN+++ 
Sbjct: 345 NNGRNQIMF 353


>gi|150017320|ref|YP_001309574.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Clostridium beijerinckii NCIMB 8052]
 gi|149903785|gb|ABR34618.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Clostridium beijerinckii NCIMB 8052]
          Length = 981

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 62/188 (32%), Positives = 91/188 (48%), Gaps = 12/188 (6%)

Query: 85  ISGSI--LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFD 135
           I+GSI  + E  IS +RI  ++  D L+ L N + F++ L          N++  + F D
Sbjct: 537 ITGSIRDISERKISEDRIKFMAFYDSLTKLPNRTLFMNRLNEQLQLSNYANKQGIVFFID 596

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D FK IND  GH  GDK++  L+ Q   +      + RLGG+EF      S E E    
Sbjct: 597 LDNFKNINDTMGHEYGDKLLISLAKQFENLIEEKDTISRLGGDEFILLHPDSKEDEIQTY 656

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           AN L  + +  ++       ++IT S GIA         STI+  AD A+Y AK+ G+NR
Sbjct: 657 ANKLLGLFD--KVFKIDNKHMYITASVGIALYPKDGRDSSTILRNADAAMYRAKELGKNR 714

Query: 255 VVCFSDIE 262
              F    
Sbjct: 715 FSLFDPEM 722


>gi|193066643|ref|ZP_03047678.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E22]
 gi|192925718|gb|EDV80377.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E22]
          Length = 558

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 536 LADRRLYLAKQAGRNRVCA 554


>gi|257482481|ref|ZP_05636522.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|320321946|gb|EFW78042.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330948|gb|EFW86922.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330872180|gb|EGH06329.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330984626|gb|EGH82729.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 712

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 95/197 (48%), Gaps = 14/197 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           ++++  +  S++++L   Y ++ + +  D L+GLLN      ++          ++ L +
Sbjct: 254 AMVMTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVEGMLLRKEQTDKYLVV 310

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQ 190
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF     G    +
Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           +AA +A  L + +   +     G  I +  S GIA        +  ++  AD A+Y AK+
Sbjct: 371 QAAKIAEKLIERVSGRRQ--VDGVDITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKR 428

Query: 250 SGRNRVVCFSDIENNTC 266
           +GR +   +    N   
Sbjct: 429 AGRQQYRFYDQNMNGRA 445


>gi|302879082|ref|YP_003847646.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
           capsiferriformans ES-2]
 gi|302581871|gb|ADL55882.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
           capsiferriformans ES-2]
          Length = 352

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 11/171 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  ++  D L+ L N +     L             ++++F D+D FK +ND  GH  
Sbjct: 167 ERLRYMAHYDPLTNLPNRALLSERLQQSVVRARRDQSTMALMFLDLDKFKPVNDTLGHET 226

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQIN 209
           GD+++  ++ +L+        + R+GG+EF        ++ +AA++A  +   + N   +
Sbjct: 227 GDQLLQQVAVRLLSCVRASDTIARIGGDEFVVLLHAIDQEPDAAMVAEKILHSL-NRPFS 285

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I     I I+ S GIA    H      ++  AD A+Y AKK GRN    F+
Sbjct: 286 IGE-HEIRISGSIGIAAYPQHGTDEKLLLINADIAMYQAKKEGRNSYRFFT 335


>gi|222098886|ref|YP_002532944.1| hypothetical protein BCQ_5255 [Bacillus cereus Q1]
 gi|221242945|gb|ACM15655.1| conserved hypothetical protein [Bacillus cereus Q1]
          Length = 351

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 110/227 (48%), Gaps = 12/227 (5%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           SIFI  + F  N++   I + P   L   +   ++L ++  +++  + +IS + + +   
Sbjct: 126 SIFIRWIWF--NVYSLSILIVPLSMLFKDM-SIVALYLVCSSVAAYITFISANYVLQSNE 182

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
            + ++ Q + ID L+GL N   F   +  +       N+ L ++  DID+FK +ND +GH
Sbjct: 183 LFQKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNDSLCLLLIDIDHFKSVNDTYGH 242

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           P GD+V+  +   L  V   P    R GGEEFA             +   +R  +E    
Sbjct: 243 PAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAAVEKHSF 302

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  G  I IT+S GI+    ++     I  AD ALY +K++GRN+V
Sbjct: 303 QLLDGTKIKITVSVGISVY--EQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|310821439|ref|YP_003953797.1| GAF domain/GGDEF domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394511|gb|ADO71970.1| GAF domain/GGDEF domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 720

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 9/189 (4%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128
           +   L +  I  +        + ++ +++  D L+GLLNH  F       ++    Y  K
Sbjct: 516 VLRMLEVMAIQAAQAVLRAQLFEQMERMATTDGLTGLLNHRTFQSKADEHLAQARRYQRK 575

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS++  DID+FK +ND +GHP GD V+  ++  L         V R GGEEFA     + 
Sbjct: 576 LSLILTDIDHFKSVNDTYGHPTGDAVLKGVAKILRDKARDTDIVARYGGEEFAIIMPETD 635

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247
            + A ++A  +R+ ++        GP + +T+S GI+    H      +I  +DQ LY A
Sbjct: 636 AKGALVIAERIREAVKAEVFQTEMGP-LKVTLSLGISTGPDHGYDKQHLIDLSDQCLYHA 694

Query: 248 KKSGRNRVV 256
           K++GRN+ V
Sbjct: 695 KRNGRNQSV 703


>gi|299069558|emb|CBJ40830.1| putative signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum CMR15]
          Length = 914

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136
            +S + + +   +  R+  L+  D L+GL N S FI+ L +  E+       L++ F D+
Sbjct: 456 MVSFADITDFKRAEQRLRHLASHDALTGLTNRSFFIAHLDAAIERARDESRELALFFLDL 515

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAIL 195
           D FK +ND  GH  GD ++   + +L    G    + RLGG+EF        E +  A L
Sbjct: 516 DRFKSVNDTAGHACGDTLLQSAAARLTDCIGPGDVIARLGGDEFVILIEQRVEGKRIAQL 575

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           A  L   +     +  +G   ++ +S G+A   H     S ++  AD A+Y AK++GRNR
Sbjct: 576 AERLLSAMRE-PFDTVNG-RYYLGVSIGVALYPHDGISGSDLLRSADAAMYRAKQNGRNR 633

Query: 255 VVCFS 259
              ++
Sbjct: 634 AQFYT 638


>gi|238759090|ref|ZP_04620259.1| Sensory box-containing diguanylate cyclase [Yersinia aldovae ATCC
           35236]
 gi|238702638|gb|EEP95186.1| Sensory box-containing diguanylate cyclase [Yersinia aldovae ATCC
           35236]
          Length = 855

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 79/188 (42%), Gaps = 11/188 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           + S +     +  RI  LS  D L+GL N       L +           L ++  D+D 
Sbjct: 413 TASDITSEIEAQERIQHLSMHDALTGLPNRIRMKEFLENKLRNLSVAQHPLVVLNVDLDK 472

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK +ND +GH  GD V+  +S++L         V R GG+EF     G SS +E   L  
Sbjct: 473 FKPVNDTYGHVTGDTVLHQVSERLRSCLRDQDMVARHGGDEFVLIITGLSSVKEIEQLCA 532

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            +   IE     +     I+I  S GIA           ++  AD A+Y AK +GRN   
Sbjct: 533 RVITRIEA--PYVVDAQDIYIGASIGIALAPQDSIQAEELLRFADIAMYEAKSNGRNCWS 590

Query: 257 CFSDIENN 264
            +S   N 
Sbjct: 591 FYSSEMNE 598


>gi|220936310|ref|YP_002515209.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997620|gb|ACL74222.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 842

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 14/190 (7%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
            + + E       + QL+  D L+GL N    I  L            + +++F D+D F
Sbjct: 394 STDISEQKKILEEVHQLAFFDPLTGLPNRRLLIDQLRHALANCDRTGHEGALLFIDLDNF 453

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND  GH +GD ++  ++++L         + RLGG+EF     G   +    + + +
Sbjct: 454 KNLNDTLGHDMGDLLLQQIAERLREHVRENDSLARLGGDEFVVMLEGLQPEGGEAV-HQV 512

Query: 200 RKIIEN-----SQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRN 253
           R + E      S+          IT S G+A      + +  ++ RAD A+Y AK +GRN
Sbjct: 513 RHVGEKLLGVLSEPFSLDRVVYRITASIGVAMFSDSDDTVEELLKRADLAMYEAKSAGRN 572

Query: 254 RVVCFSDIEN 263
            +  F+    
Sbjct: 573 GLRFFNPSMQ 582


>gi|71277945|ref|YP_268679.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71143685|gb|AAZ24158.1| sensory box/GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 654

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 20/225 (8%)

Query: 58  FYGLEYILVENLSLVIISITISLLL---GYISG-----SILKELFISYNRISQLSRIDCL 109
           ++G  Y   +N       ++IS +    G IS        + E    + ++ +L+  D L
Sbjct: 418 WHGETYNCTKNGEFYWSMMSISPIRNENGEISQFVSVSQDITEHKSKHLKMEELALRDPL 477

Query: 110 SGLLNHSAFISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +GL N   F   L    + +S        I+  D+D+FK IND +GH VGD ++  ++ +
Sbjct: 478 TGLANRRLFDDRLNQAIQIISYQNRNGIGIIMLDLDHFKDINDTYGHDVGDLILKEVARK 537

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITI 220
           L++       V R GG+EF       S+  +A  +A ++ K +    I++    +  IT 
Sbjct: 538 LLLSTRKEDTVSRFGGDEFIILLQDVSKVSDAQRVAANILKTLSE-PIDVGE-HTFSITC 595

Query: 221 SAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           S G+        I + ++  AD ALY AK +GRN +  ++     
Sbjct: 596 SLGVCLAPQDGCIPTQLLKAADLALYQAKIAGRNNIQFYNTGMQQ 640


>gi|78355933|ref|YP_387382.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218338|gb|ABB37687.1| diguanylate cyclase (GGDEF domain) [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 542

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 13/184 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           + + +      +  LS  D L+GL N           I++    +   S +  DID+FKQ
Sbjct: 351 MAERVSQQMRDLEHLSFCDTLTGLHNRRHLAHEGTRTITACTEADLPCSCLMLDIDFFKQ 410

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH  GD V+  ++  +     +     R+GGEEFA  A  +    A  LA  +R+
Sbjct: 411 VNDAWGHDAGDMVLQSVARTISNAVRSKDMTIRMGGEEFAVIAPATDTASAFSLAERIRR 470

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNRVV 256
            IE++ +  +    I ITIS G+A+           +  ++ +AD+ALY AKK GRNR  
Sbjct: 471 NIESTPVQAADD-EIRITISIGVADMGGAPIFGTTQLDDLLAKADRALYQAKKKGRNRTE 529

Query: 257 CFSD 260
            +S+
Sbjct: 530 IWSE 533


>gi|95931350|ref|ZP_01314063.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95132593|gb|EAT14279.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 762

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 94/206 (45%), Gaps = 11/206 (5%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           +  ++  +  N +L      +   +  +      +L     R+  LS  D L+GL N   
Sbjct: 556 WSSVKQEMGFNYTLFWKIFGVLAFIAGVFSVHYYQLRKYNQRLLVLSETDKLTGLANRLK 615

Query: 118 FISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
               L         Y     ++ FDID+FK +ND +GHPVGD+V+  ++  +        
Sbjct: 616 LDKMLLEQEQLFVRYQIPCGVIIFDIDHFKTVNDTYGHPVGDQVLKEIAQLIRENIRVTD 675

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            VGR GGEEF   A  S+ +E   LA+ L   + N Q +        +T S G+    H+
Sbjct: 676 HVGRWGGEEFLIIAPSSNREETEQLADKLLSALRNHQFD----QVGTVTASFGVCALRHE 731

Query: 231 EPISTIIYRADQALYVAKKSGRNRVV 256
              S ++  AD+ALY AK  GRNRV+
Sbjct: 732 LSASKVLSLADKALYQAKAEGRNRVI 757


>gi|315126927|ref|YP_004068930.1| GGDEF protein [Pseudoalteromonas sp. SM9913]
 gi|315015441|gb|ADT68779.1| GGDEF protein [Pseudoalteromonas sp. SM9913]
          Length = 960

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 90/184 (48%), Gaps = 13/184 (7%)

Query: 85  ISGSILKELFISYNRIS---QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFF 134
           ++  ++K+      + S     +  D L+ L N  AF   L          N+  +I   
Sbjct: 778 LTSRVVKQTQALQEQASAFAYQATHDQLTDLPNRRAFDGWLADNFSDFKACNKSFAIAIM 837

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+IND + H +GD+VI  +++ L         V R GGEEF       S  +A  
Sbjct: 838 DIDHFKRINDGWSHLIGDQVICEVANILKAHCEGEQEVARWGGEEFTFVFPDMSAVQAQE 897

Query: 195 LANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +   LRK IEN    NI+ G  + +T+S G+++    +    ++ RADQALY AK +GRN
Sbjct: 898 MCEKLRKCIENKNFSNIAEG--LSVTVSFGVSDSGDVDDYDRLLSRADQALYKAKNNGRN 955

Query: 254 RVVC 257
           R   
Sbjct: 956 RTEV 959


>gi|285018137|ref|YP_003375848.1| c-di-gmp phosphodiesterase or signal transduction protein
           [Xanthomonas albilineans GPE PC73]
 gi|283473355|emb|CBA15860.1| hypothetical c-di-gmp phosphodiesterase or signal transduction
           protein [Xanthomonas albilineans]
          Length = 864

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 10/187 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           ++  E   +  R+ QL+  D L+ L N   F +           +   ++I+F DID FK
Sbjct: 417 ALAMEREQTKERVHQLAFYDALTNLPNRVMFSARAEQALADAEYHGSPVAILFVDIDRFK 476

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++N+  GH  GD ++  ++ +L    G    + R  G+EF         ++AA  A  L 
Sbjct: 477 RVNETQGHHAGDGLLRDIAQRLTEEMGVTDLLSRQSGDEFVMMLPQCGAEQAAGTAERL- 535

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++  ++  +    ++H + S G+A      + I T++  AD A+Y AK  G      FS
Sbjct: 536 -LLALAEPVVVGHVTLHPSASIGVAMFPEDGDDIETLLRHADLAMYRAKDEGGGSFRYFS 594

Query: 260 DIENNTC 266
              N   
Sbjct: 595 SDMNRMA 601


>gi|167590038|ref|ZP_02382426.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia ubonensis Bu]
          Length = 804

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +   +  R+  L+  D L+GL N + F   L          + K+++++ D+D FK
Sbjct: 345 SDITQRRQAEERLGYLATHDVLTGLANRTLFEERLAHAIVQAKRRSRKVAVMYVDLDRFK 404

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            +ND  GH  GD+V+  ++ ++V        V R+GG+EFA         ++   +A  L
Sbjct: 405 LVNDTLGHNAGDEVLKVVAGRIVAGVRASDTVARMGGDEFALVLEEFDDVRDVGRIARKL 464

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
               E  Q     G  I +T S GI+           ++  ADQA+Y AK  GRN    F
Sbjct: 465 LD--EVGQAIDIGGREIFVTPSIGISIYPDDGTEAEQLMLLADQAMYGAKSRGRNVFQFF 522

Query: 259 SDIENNTC 266
                ++ 
Sbjct: 523 ESKMTSSA 530


>gi|317153608|ref|YP_004121656.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
 gi|316943859|gb|ADU62910.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
          Length = 369

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
            + E       + +L+R D ++G+ N   F+               +LS++  D+D+FK 
Sbjct: 174 DVTERKRMIEEMCRLARTDSMTGMWNRGYFMELAGRELNRARRSGGELSLIMLDVDHFKA 233

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH VGD  +  L+  +           RLGGEEFA     +S ++A  +A  + +
Sbjct: 234 INDTHGHDVGDVALMELARVIGESVREVDVAARLGGEEFAVMLPDTSAEDACAVAVRIAR 293

Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCF 258
            I  + ++   GP + +T+S G+A     K+ + +++  +D ALY AKK+GR+RV  +
Sbjct: 294 TIRRAVVDSPRGP-VSMTVSMGLASFEESKDSLDSLLKYSDIALYAAKKNGRDRVETY 350


>gi|308188095|ref|YP_003932226.1| Heme-regulated cyclic AMP phosphodiesterase [Pantoea vagans C9-1]
 gi|308058605|gb|ADO10777.1| Heme-regulated cyclic AMP phosphodiesterase [Pantoea vagans C9-1]
          Length = 949

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + +   +  RI  ++  D L+ L N   F   L            + + +  D+D FK 
Sbjct: 515 DVTDQRAADARIHHMAHHDNLTSLPNRILFRQRLSEALRTANQTQRQTAALCLDLDNFKN 574

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           +ND  GH +GD+++  ++ +L         + R+GG+EFA      ++ +EA+I+A  L 
Sbjct: 575 VNDALGHQIGDELLRSVAKRLRNTLRDQDTLARIGGDEFAIVLPSVANSEEASIVAQRLI 634

Query: 201 KIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + I         G ++ + +S GIA           ++  AD ALY AK++GRNR   F+
Sbjct: 635 EAIR--PPVNVEGHNLSVGLSVGIALSTTITNTPEQLLRCADMALYEAKRNGRNRYEHFT 692

Query: 260 DIENNTC 266
              ++  
Sbjct: 693 LEMDDVA 699


>gi|291612540|ref|YP_003522697.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291582652|gb|ADE10310.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 716

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 11/194 (5%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132
           LL    +   + E      +I   +  D L+GL N +     L         Y  KL++ 
Sbjct: 263 LLFYEGTVEDITERKNYEQQIEYQATHDALTGLPNRTLLADRLQQYIGIADRYTSKLAVA 322

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F D+D FK IND+ GH  GD+++  ++ +L         V RLGG+EF      +   + 
Sbjct: 323 FVDLDQFKLINDSMGHHAGDELLKIMAARLASCVRESDTVVRLGGDEFVLLL--TGLHKI 380

Query: 193 AILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250
             ++  +++++ + +           ++ S GI+         +T++  AD A+Y +K+S
Sbjct: 381 EDISESMQRVLSSVAGPCTIEDRDFVVSCSIGISIYPDDARDTTTLLKYADSAMYKSKQS 440

Query: 251 GRNRVVCFSDIENN 264
           GRN    ++D  N 
Sbjct: 441 GRNNFQFYTDELNQ 454


>gi|289208828|ref|YP_003460894.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
 gi|288944459|gb|ADC72158.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
          Length = 491

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 67/233 (28%), Positives = 100/233 (42%), Gaps = 26/233 (11%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96
           I  +  + +  I LF  G+      + + V   +    SI I LL+ Y    +++E    
Sbjct: 272 ILGSAAVLVPAIILFTAGV----DTDTVRVAAGA----SILIFLLVLYRMSGLIRETQRQ 323

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
              + QLSR D L+G  N           ++ +   +  L++ F D+DYFKQ ND  GH 
Sbjct: 324 AQALEQLSRTDPLTGAANRRHLETVLEDELARVRRLDTPLALAFIDLDYFKQYNDLHGHA 383

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+++  L             + R GGEEF      +   +A  +   LR+   N Q  
Sbjct: 384 QGDRLLRDLVTAWHQELRPSDTIARYGGEEFVVVLPHTGPDQAGTVIERLRQRTPNQQ-- 441

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
                    T SAGIA     E   +++ RADQALY AK  GRN+    +  E
Sbjct: 442 ---------TCSAGIACAEPMETAESLLRRADQALYRAKDEGRNQSRFATTDE 485


>gi|39936853|ref|NP_949129.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009]
 gi|39650710|emb|CAE29233.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris
           CGA009]
          Length = 379

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 69/273 (25%), Positives = 111/273 (40%), Gaps = 36/273 (13%)

Query: 19  LESFSPHTFM--IYFSIFFSIFIATV-------------IFIANIFLFYIGLTPFYGLEY 63
           +  F+P  F      +  F IF  T+             I  A ++   +     +   +
Sbjct: 105 IGQFAPEPFAGRYMMAALFVIFAGTLVSALPWRATRIMTIAAAALYTLIVVSGLRWPPAW 164

Query: 64  ILVENLSLVIISITISL--------------LLGYISGSILKELFISYNRISQLSRIDCL 109
             ++ + L +++  I+L               +      + +EL  +   + +LS  D L
Sbjct: 165 SNIDLVGLCLVTCVIALRARQRKDVQIAELQQIRRRDALLKQELRQANAALGRLSTTDPL 224

Query: 110 SGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           +G+ N       +      L      S++  D+D+FK  ND+ GH  GD  +  +   + 
Sbjct: 225 TGVFNRRYLDELIEQETASLVPSLGQSVLMIDVDHFKLFNDHGGHAAGDSCLQQIVTAVR 284

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISA 222
               +   V R GGEEFA    G  E E    A  L   + + QI     G    +TIS 
Sbjct: 285 RNLRSCDVVVRYGGEEFAVVLPGLDEAELRETAERLCHAVSDLQIPHPGLGQGRVVTISV 344

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           GIA     E ++  I RADQ+LY AK++GRNRV
Sbjct: 345 GIAPPVPAETLADAIQRADQSLYRAKRAGRNRV 377


>gi|95928348|ref|ZP_01311096.1| ammonium transporter [Desulfuromonas acetoxidans DSM 684]
 gi|95135619|gb|EAT17270.1| ammonium transporter [Desulfuromonas acetoxidans DSM 684]
          Length = 606

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 84/188 (44%), Gaps = 8/188 (4%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--EKLS 130
           +++   + LL  +    + EL  S   +      D L+ + N    +  +        +S
Sbjct: 423 VVARFFNYLLIRLRDRQV-ELVASNKSLQSQVYFDPLTKVYNRRGALEKIRRQTPATPMS 481

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  DID+FK IND +GH VGD V+  L++ +  +        R GGEEF      S   
Sbjct: 482 VIIIDIDHFKTINDTYGHDVGDVVLKELAELIQQLIRNQDLFARWGGEEFILLCETSILD 541

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKK 249
           EA  +A  LR  I        +    H+T S G+       +P   +   AD+ALY AK+
Sbjct: 542 EARRIAEKLRSSIAAYPFTTVN----HLTCSFGVCSPERPDQPFDALFKDADEALYRAKE 597

Query: 250 SGRNRVVC 257
            GRNRV C
Sbjct: 598 LGRNRVCC 605


>gi|324119004|gb|EGC12893.1| diguanylate cyclase domain-containing protein [Escherichia coli
           E1167]
          Length = 564

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LYQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 542 LADRRLYLAKQAGRNRVCA 560


>gi|237809846|ref|YP_002894286.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Tolumonas auensis DSM 9187]
 gi|237502107|gb|ACQ94700.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Tolumonas auensis DSM 9187]
          Length = 753

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 16/191 (8%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
              + +  I  + I+ L+  D L+GL N       L           ++ +++F D+D F
Sbjct: 306 ARDITDRKIKEDEIAWLAFYDPLTGLPNRRLLQDRLHQAMAGSKRSGQRAALLFIDLDNF 365

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAA---- 193
           K +ND  GH  GD ++  ++ +L         V RLGG+EF      L  SE+ AA    
Sbjct: 366 KTLNDTLGHDKGDLLLQQVATRLFECVRECDTVARLGGDEFVVMLEELNHSEELAAAQSK 425

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGR 252
           ++   +  +++  Q  + +G   + + S GI     H+E    ++ RAD A+Y AK +GR
Sbjct: 426 MVGEKI--LVKLCQPYLIAGYEHNSSASIGITLFLAHQESSDELMKRADIAMYQAKSAGR 483

Query: 253 NRVVCFSDIEN 263
           N +  F +   
Sbjct: 484 NTLRFFDNKMQ 494


>gi|229916945|ref|YP_002885591.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Exiguobacterium sp. AT1b]
 gi|229468374|gb|ACQ70146.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Exiguobacterium sp. AT1b]
          Length = 819

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 8/184 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQI 142
             + E      +I+ L  +D L+GL N   F   L      S +E+ ++ + D+D FK I
Sbjct: 376 RDISERKRIEAQINDLVYLDPLTGLPNRRLFSDRLDALLGQSQSEQFALYYIDLDNFKVI 435

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH +GD+ +  ++ ++         + RLGG+EF   +  +    AA  A +L  +
Sbjct: 436 NDRFGHSIGDQFLKQVTTRIQSTIQKTDTLARLGGDEFIILSPDTKSNLAAHRAQELINV 495

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +            +    S GI+      +    +I  AD A+Y AK  G+N    F++ 
Sbjct: 496 L--HPPFELENEEVFTGASIGISLHPSDGDTAEELIKNADIAMYRAKADGKNGYQFFTNE 553

Query: 262 ENNT 265
            N +
Sbjct: 554 LNES 557


>gi|74317384|ref|YP_315124.1| diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056879|gb|AAZ97319.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 738

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 19/188 (10%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFK 140
             + E ++   RIS ++  D L+GL N +   + +    E       K +++F D+D FK
Sbjct: 287 RDVTEAYMQEKRISHMAMHDALTGLPNRTYLDARINEAIEQSRSSATKFALLFIDLDNFK 346

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-----GSSEQEAAIL 195
           +IND +GH  GD+++  + + L         + R GG+EF              + A+ L
Sbjct: 347 RINDLYGHKAGDQLLVSVGELLRASLRATDVLARWGGDEFVVLLPFPGEIDMVRRIASEL 406

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
            + LR  +E    +        +T+S G+A      E   T++ +AD+AL+ AK  GRN 
Sbjct: 407 LDGLRNDLEKQCRDT------FVTVSIGVAIYPDDAESAETLLVQADKALFYAKSQGRNN 460

Query: 255 VVCFSDIE 262
           +  ++D++
Sbjct: 461 IQLYADLQ 468


>gi|21230901|ref|NP_636818.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66769100|ref|YP_243862.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21112512|gb|AAM40742.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574432|gb|AAY49842.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 565

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 59/193 (30%), Positives = 93/193 (48%), Gaps = 11/193 (5%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SY 125
           + S+T++          L  L +    + Q S  D L+GL N      +L          
Sbjct: 367 LASLTVAEAAAEQLSLALHNLRL-RETLRQQSIRDPLTGLFNRRYLEEALNHELSRCTRR 425

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            + LS++  D+D+FKQ ND  GH  GD+V+A + + L+          R GGEE      
Sbjct: 426 VQPLSVLMLDVDHFKQFNDLHGHSGGDRVLAAIGELLLAQTRGEDICCRYGGEELTIILP 485

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERC-HKEPISTIIYRADQA 243
                 A+ +A  LR  I+  Q+ ++ G S+  IT S G+A    H    + ++ +AD+A
Sbjct: 486 EVDLATASAMAEKLRAGIDGLQV-MADGVSLPKITASFGVATFPGHAGNAAQLLRKADEA 544

Query: 244 LYVAKKSGRNRVV 256
           LY AK++GRN+VV
Sbjct: 545 LYRAKQAGRNQVV 557


>gi|220931247|ref|YP_002508155.1| diguanylate cyclase [Halothermothrix orenii H 168]
 gi|219992557|gb|ACL69160.1| diguanylate cyclase [Halothermothrix orenii H 168]
          Length = 556

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 74/238 (31%), Positives = 117/238 (49%), Gaps = 11/238 (4%)

Query: 30  YFSIFFSI--FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
            ++  FSI  F+  V+   +I+   +       +  I V   S+ I+ + I   +  + G
Sbjct: 318 LYARVFSICSFVLFVLASCDIYHILMNRGFVISMSIIGVAVFSIGIVFLIIIDYI-IMQG 376

Query: 88  SILKELFIS---YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQIND 144
            ++ E   S   Y +    S  D ++G+ NH   +S+L    E  S+V  D+D FK IND
Sbjct: 377 QVVYEKKKSRFFYEK----SIRDSMTGIYNHHYIVSTLSRMKEPFSLVVLDLDNFKNIND 432

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+VI  ++  L        +VGR GG+EF    +  S  E  ++A  +++ +E
Sbjct: 433 TYGHLAGDEVIKNVAINLQNSIRKYDYVGRYGGDEFVIILMNCSLDELKMMAKKIKRAVE 492

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              +    G  I +T S GI     KE    +IYRADQALY AKKSGR+ +  ++  E
Sbjct: 493 E-PVYKYKGNKIRVTASMGIYNATEKEEGEQVIYRADQALYAAKKSGRSGIKMWTKSE 549


>gi|309795937|ref|ZP_07690350.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
 gi|308120387|gb|EFO57649.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
          Length = 558

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 536 LADRRLYLAKQAGRNRVCA 554


>gi|237803673|ref|ZP_04591258.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025655|gb|EGI05711.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 796

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 60/175 (34%), Positives = 88/175 (50%), Gaps = 10/175 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +L      + +LS  D L+G  N   F   +         +   LSI+  DID+FK
Sbjct: 620 SDITDLKRVEQELRELSVTDVLTGAYNRRYFQDRMQAELKRVDRHGGHLSIIMLDIDHFK 679

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +A  LA  LR
Sbjct: 680 RINDRFGHAAGDQVLKAISEKISHRLRSDDVFCRLGGEEFMVVCPGTRGAQAYQLALSLR 739

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + + N  I    G    +T S GIA     E I  ++ RAD  +Y AK++GR+RV
Sbjct: 740 EELRNQVI---EGVDHVVTASFGIASLRAGEGIDAMLLRADSGVYAAKQAGRDRV 791


>gi|330898844|gb|EGH30263.1| GGDEF domain-containing protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 424

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 119/285 (41%), Gaps = 36/285 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL------FYIG 54
           + +S    L +WL  +    +     +M    + +++F+ +   +   +L          
Sbjct: 133 LEQSYPVELQVWLA-DIRWPALHGA-WMSLIQLSYAMFLVSFAVLIWQYLEKPRPLHAAQ 190

Query: 55  LTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           +    GL + L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL 
Sbjct: 191 IVGLLGLFWALPKTFILPFTLNILCSQVMLMIAAAVAHEAY-------QMAFRDELTGLP 243

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A    +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        
Sbjct: 244 GRRALNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAY 303

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------------------- 214
           R GGEEFA      S  E       +R+ I + +I + +                     
Sbjct: 304 RYGGEEFAIVFAAKSIDECMPHLEAIRETIASYEIQLRNKTDRPQDDQQGRQRRSGAQAG 363

Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S+ +T+S G+AER         ++  ADQALY AK +GRN VV +
Sbjct: 364 SVSVTVSIGVAERQPEHRTPEEVLKSADQALYAAKGAGRNCVVAY 408


>gi|312960659|ref|ZP_07775165.1| signaling repeat/GGDEF domain/EAL domain protein [Pseudomonas
           fluorescens WH6]
 gi|311285185|gb|EFQ63760.1| signaling repeat/GGDEF domain/EAL domain protein [Pseudomonas
           fluorescens WH6]
          Length = 698

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 52/214 (24%), Positives = 98/214 (45%), Gaps = 13/214 (6%)

Query: 64  ILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +LV  L+++ I++  SLL   +      +   L  +   ++ L+  D L+GL N +    
Sbjct: 220 VLVTTLAVLAIALLTSLLDARLEARTAVLADSLTQANQELTHLALHDMLTGLPNRTLLAD 279

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            +    +         +++F D+D FK +ND FGH +GD+++  +  +L     +   + 
Sbjct: 280 RIQQAMQAVKEEGGCFALMFIDLDGFKPVNDAFGHHMGDQLLREVGLRLREDLRSHDTLA 339

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           R+GG+EF      S   +A  LA   R+++  ++    +   ++I+ S GIA    +   
Sbjct: 340 RIGGDEFVLLVQLSQPDDALGLAE--RQVVMINRAFQVAEHELNISASVGIALFPGNGGN 397

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              ++  AD A+Y AK  G+N    F    N   
Sbjct: 398 PQELLMNADAAMYHAKNMGKNGYSFFDASMNTNA 431


>gi|229917194|ref|YP_002885840.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
 gi|229468623|gb|ACQ70395.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
          Length = 358

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 77/247 (31%), Positives = 122/247 (49%), Gaps = 20/247 (8%)

Query: 16  EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIIS 75
            K +++  P T +I+ +I  +IF A +     + LFY  L        I+   +S     
Sbjct: 129 RKRMDNTRP-TLLIFTTISIAIFGAAIYAALPLNLFYPVL--------IVYTLMSYGGAC 179

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIV 132
               LLL       L+  F +     QL+R D L+G+ N      ++ +     E+ +++
Sbjct: 180 AAYRLLLE------LRRHFENVQHQQQLARTDALTGIANRRLLNEAMANLTVEAEEYALI 233

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK++ND +GH VGD V+  L   LV        VGR GGEEF      ++  E 
Sbjct: 234 LVDIDHFKRVNDTYGHDVGDDVLRELGMLLVNESDERHLVGRFGGEEFLIVMPHATRNEV 293

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           + LA  +R+ +       S+G ++HIT+S G A   +   I +++  AD+ALY AK+SGR
Sbjct: 294 SRLAESIREKVSTFPFETSAG-TLHITVSLG-ACHSNDIEIDSVLKHADEALYHAKESGR 351

Query: 253 NRVVCFS 259
           NR +  S
Sbjct: 352 NRFILAS 358


>gi|218233425|ref|YP_002368848.1| putative sensory box/GGDEF family protein [Bacillus cereus B4264]
 gi|228960311|ref|ZP_04121964.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296504538|ref|YP_003666238.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
 gi|218161382|gb|ACK61374.1| putative sensory box/GGDEF family protein [Bacillus cereus B4264]
 gi|228799335|gb|EEM46299.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296325590|gb|ADH08518.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
          Length = 430

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          +EK++I+ FDID FK +
Sbjct: 254 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRNDEKIAIILFDIDNFKTV 313

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 314 NDTYGHDFGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 373

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q    S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 374 IETKQFTGIS----KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 425


>gi|91211175|ref|YP_541161.1| hypothetical protein UTI89_C2157 [Escherichia coli UTI89]
 gi|114154897|sp|Q1RAI4|YEDQ_ECOUT RecName: Full=Cellulose synthesis regulatory protein
 gi|91072749|gb|ABE07630.1| hypothetical protein UTI89_C2157 [Escherichia coli UTI89]
          Length = 569

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 367 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 426

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 427 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 486

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 487 CVILPGASLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 546

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 547 LADRRLYLAKQAGRNRVCA 565


>gi|120554700|ref|YP_959051.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120324549|gb|ABM18864.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 629

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 68/278 (24%), Positives = 120/278 (43%), Gaps = 36/278 (12%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTP-------------FY 59
           + + +  + + P  +  Y + +  + I  +I+    F  Y+G  P               
Sbjct: 339 IAYVRWRQGYKPAFW--YLAAWMVMVIGALIYAMAAF-GYLGDYPAREVMMQAVVGGQVI 395

Query: 60  GLEYILVENLSLVIISIT---------ISLLLGYISGSI---LKELFISYNRISQLSRID 107
            L Y LV+   L+   +          + L +   +  +   ++EL  +  +++ +S  D
Sbjct: 396 LLNYALVQRWRLLNQKLLDVEHQARTELELKVHERTAQLRNTMRELEQANRKLASISLND 455

Query: 108 CLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+GL N     + L             LS+   D D+FK+IND +GH  GD+ +  ++ 
Sbjct: 456 ALTGLYNRRHMDNLLPELCREARRTGNPLSLALIDADHFKRINDTWGHDFGDQCLKQIAG 515

Query: 161 QL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            L   V        R GGEEFA    G+    A  L   + K +  + +      + H+T
Sbjct: 516 ILDEHVKRPRDVAIRFGGEEFALLLPGTDLDGARTLCLAILKAMRKTPLIAPGNETFHLT 575

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +SAGIAE    +  S +  +AD+ALY AK +GR+++V 
Sbjct: 576 LSAGIAELATGQEPSDLFRKADEALYQAKGAGRDQIVL 613


>gi|300904847|ref|ZP_07122672.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|301304250|ref|ZP_07210365.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|300403230|gb|EFJ86768.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|300840507|gb|EFK68267.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|315257212|gb|EFU37180.1| diguanylate cyclase domain protein [Escherichia coli MS 85-1]
          Length = 436

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 234 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 293

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 294 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 353

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 354 CVILPGASLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 413

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 414 LADRRLYLAKQAGRNRV-FASD 434


>gi|291286343|ref|YP_003503159.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809]
 gi|290883503|gb|ADD67203.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809]
          Length = 370

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 69/248 (27%), Positives = 107/248 (43%), Gaps = 29/248 (11%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPF-YGLEYILVENLSLVIISITISLLLGYISGSI---- 89
           F + I   + +    L  I    + Y          + V + + + LL G+I   +    
Sbjct: 123 FLVSIVAYLQVGGYLLHNIDFNIYNYAARSWFAAIYNFVAMGVVVVLLSGFIDHLLRQNL 182

Query: 90  -------------LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKL 129
                        + +  ++  +  +LS  D L+ L N   F +           Y   L
Sbjct: 183 RKLAEKQKQLRREVTQRKLAEEQYKELSETDPLTKLYNRRYFFNKADVEFARSKRYGSPL 242

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D DYFK INDNFGH  GDKV+   ++ L           R GGEEF      ++ 
Sbjct: 243 SLIIADADYFKNINDNFGHQTGDKVLIKTANILNAKLRPSDIACRFGGEEFCILLPETNI 302

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAK 248
            EA  +A   R  I +++        +H+T S GIA+     E +S ++ RAD+ALY AK
Sbjct: 303 IEAQNVAERFRSEISSARF---DNKEVHLTCSFGIAQFKETDEELSHMVSRADEALYKAK 359

Query: 249 KSGRNRVV 256
           KSGRN ++
Sbjct: 360 KSGRNTII 367


>gi|224370301|ref|YP_002604465.1| diguanylate cyclase (GGDEF) domain protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223693018|gb|ACN16301.1| diguanylate cyclase (GGDEF) domain protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 576

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 12/176 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           K L  +  ++  L   D L+ + N   F   L    ++       LS++  DIDYFK  N
Sbjct: 391 KRLETANQKLQTLVTSDGLTMIANRRKFDEYLDQEWQRCKRAKVWLSLLMCDIDYFKHYN 450

Query: 144 DNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD  +  ++  +   V      V R GGEEFA     +    A  +A  +++ 
Sbjct: 451 DTYGHQAGDDCLRKIAQAMEKTVVRPMDLVARYGGEEFAVILSDTGLNGACHVARRIQED 510

Query: 203 IENSQINIS-SGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNR 254
           ++N  I  S S  S H+T+S GI      +    +  +I  AD+ALY AK+ GRNR
Sbjct: 511 VKNLNIAHSESSVSTHVTLSIGITCLIPDDEDLSMDLLIKTADEALYKAKRKGRNR 566


>gi|119897569|ref|YP_932782.1| EAL/GGDEF/PAS/PAC-domain-containing signalling protein [Azoarcus
           sp. BH72]
 gi|119669982|emb|CAL93895.1| EAL/GGDEF/PAS/PAC-domain containing signalling protein [Azoarcus
           sp. BH72]
          Length = 880

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 90/210 (42%), Gaps = 12/210 (5%)

Query: 64  ILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  E LS+  I+     +  YI   S + +   S  RI  L+  D L+GL N       L
Sbjct: 401 IYPEWLSITAITEGDGGVSHYIGIFSDITDRKESEARIRHLAHHDALTGLPNRLLLQDRL 460

Query: 123 GSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
           G         + + +++F D+D FK IND  GH +GD ++  ++ + +        V R 
Sbjct: 461 GQAILKARRNSTQAAVLFLDLDRFKTINDTLGHEIGDGLLRQVTQRCLGAVRETDTVARQ 520

Query: 176 GGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF          Q+A  +A  +   +  ++        + +T S GIA         
Sbjct: 521 GGDEFVIVLPDLEHGQDAGTIARKILAAL--TEPCRLGPHELTVTGSIGIALYPGDGADP 578

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           S ++  AD A+Y AK  GRN    ++   N
Sbjct: 579 SMLLRNADAAMYRAKADGRNGFQFYAADMN 608


>gi|86750660|ref|YP_487156.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
 gi|86573688|gb|ABD08245.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
          Length = 381

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 75/279 (26%), Positives = 126/279 (45%), Gaps = 26/279 (9%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIY------FSIFFSIFIATVIFIANIFLFYIG 54
           +  +L     IW+     L  F    F+I+       S   S+     +  A + L    
Sbjct: 104 LNVALVMGFCIWVPQIAFL--FLCSLFIIFNFASLRASTSQSLICWATMAAALVVLLVFT 161

Query: 55  LTPFYGLEYILVE---NLSLVIISITISLLLGYISGSIL-------KELFISYNRISQLS 104
            TP       L+E    +  +++++   + +G  S ++         +L  +Y RI +L+
Sbjct: 162 DTPIAIPHDTLLERTVTMLALVLTLGRCMFIGMYSSAMRVSLYKRGLQLREAYRRIEELA 221

Query: 105 RIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            +D L+G  N           I+        LS+   D+D+FK+IND+FGHP GD+V+  
Sbjct: 222 ELDELTGAFNRRCIMRMLDDEIARAERSATPLSLALIDLDWFKRINDSFGHPTGDEVLRT 281

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            +  +     +    GR GGEEF      +S ++A  L + LR+I+        S P + 
Sbjct: 282 FAITIFANIRSFDRFGRYGGEEFLLLLPNTSREDAHALLDRLREIVGELDWTAFS-PGMR 340

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +T+SAG+      E   +++ RAD ALY AK+ GRNR+ 
Sbjct: 341 VTLSAGVTTMSPDETAESVLARADSALYAAKEKGRNRIA 379


>gi|30022131|ref|NP_833762.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 14579]
 gi|229047736|ref|ZP_04193316.1| Sensory box/GGDEF family protein [Bacillus cereus AH676]
 gi|29897688|gb|AAP10963.1| Sensory box/GGDEF family protein [Bacillus cereus ATCC 14579]
 gi|228723528|gb|EEL74893.1| Sensory box/GGDEF family protein [Bacillus cereus AH676]
          Length = 431

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          +EK++I+ FDID FK +
Sbjct: 255 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRNDEKIAIILFDIDNFKTV 314

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 315 NDTYGHDFGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 374

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q    S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 375 IETKQFTGIS----KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 426


>gi|89896138|ref|YP_519625.1| hypothetical protein DSY3392 [Desulfitobacterium hafniense Y51]
 gi|219670556|ref|YP_002460991.1| diguanylate cyclase with PAS/PAC sensor [Desulfitobacterium
           hafniense DCB-2]
 gi|89335586|dbj|BAE85181.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219540816|gb|ACL22555.1| diguanylate cyclase with PAS/PAC sensor [Desulfitobacterium
           hafniense DCB-2]
          Length = 331

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 108/230 (46%), Gaps = 26/230 (11%)

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLL------LGYISGSILK---------ELF 94
           +F   +  F  ++  + +N S + +  TIS +      L Y    I           EL 
Sbjct: 99  VFAGNIHSFTTVKRYIHKNGSTIWVRSTISAVRTERGNLKYFVAQIQDMTIAKNAEDELR 158

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFG 147
            S +    L+R D L+  LN  AFI  L    E+        +++  DIDYFK++ND FG
Sbjct: 159 KSRDNAEVLARTDYLTKTLNRRAFIERLQEELERTKRTQEGFAMILVDIDYFKKVNDQFG 218

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+   +D L        F+GR GGEEF      +  ++AA++A  +R+ +E  +
Sbjct: 219 HLAGDYVLQKFADCLSNNVRPYDFIGRYGGEEFIICLPDTDVEQAALVAERMRESVEALE 278

Query: 208 INISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255
           ++      I +T S G+A       + +  +I +AD A+YVAK   +N V
Sbjct: 279 VDYLHAQ-IKVTGSFGVAVYDSHSSDTLDELIEKADGAMYVAKNH-KNTV 326


>gi|333008575|gb|EGK28043.1| diguanylate cyclase domain protein [Shigella flexneri VA-6]
          Length = 366

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 137 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVVYPLLFGWVSYQTATKLAE 196

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 197 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 256

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      +R+ +   ++
Sbjct: 257 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVREGLNTLRL 316

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 317 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 364


>gi|324116869|gb|EGC10782.1| diguanylate cyclase domain-containing protein [Escherichia coli
           E1167]
          Length = 366

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 137 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVVYPLLFGWVSYQTATKLAE 196

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 197 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 256

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      +R+ +   ++
Sbjct: 257 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVREGLNTLRL 316

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 317 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 364


>gi|262403038|ref|ZP_06079598.1| GGDEF family protein [Vibrio sp. RC586]
 gi|262350537|gb|EEY99670.1| GGDEF family protein [Vibrio sp. RC586]
          Length = 338

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 68/220 (30%), Positives = 106/220 (48%), Gaps = 21/220 (9%)

Query: 58  FYGLEYILVENLSLVIISITISLLLG----------YISGSI------LKELFISYNRIS 101
           F  LE +  +NLS+  +   I  L+           +++  +      +  L     ++ 
Sbjct: 117 FKDLERVEQDNLSIEEVMTVIRRLVNDSKDIRHSTNFLNNQLNAATLEISRLKEQLAKVQ 176

Query: 102 QLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           + +  D LSGL N  AF     +L      +S++  DID+FK +ND +GH  GD++I  +
Sbjct: 177 KDALFDSLSGLYNRRAFDDDMFTLSHAGNPVSLIMLDIDHFKALNDTYGHLFGDQIIRAI 236

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217
           + +L  +    +   R GGEEFA  A   S + A   A  +R+ IE   + +  SG S+ 
Sbjct: 237 AKRLQSLCRDGVTAYRYGGEEFAIIAPNKSLRIARQFAESVRRSIEKLNVKDRRSGQSVG 296

Query: 218 -ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            IT S G+ E    E +  +I RAD  LY AK  GRNRV+
Sbjct: 297 SITASFGVVENIQGESLEAMIGRADGLLYEAKNLGRNRVM 336


>gi|172065448|ref|YP_001816160.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria MC40-6]
 gi|171997690|gb|ACB68607.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria MC40-6]
          Length = 837

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + +   +  R+  L+  D L+ L N   F   L            K+++++ D+D FK
Sbjct: 389 SDITQRRQAEERLGYLATHDVLTNLANRMLFEERLTHAIVHAKRLGRKVAVMYLDLDRFK 448

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            +ND  GH  GD+V+  +++++V        V R+GG+EFA       + ++   +A  L
Sbjct: 449 LVNDTLGHNAGDEVLKMVAERIVANVRANDTVARMGGDEFALVLEEVDDVRDVGRVARKL 508

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
              +  + I+I     I +T S GI+           +I  ADQA+Y AK  GRN    F
Sbjct: 509 LDEVGRA-IDIVD-RQIFVTPSIGISIYPDDGTEAEDLILLADQAMYGAKNRGRNVFQFF 566

Query: 259 SDIENNTC 266
                ++ 
Sbjct: 567 ESKMTSSA 574


>gi|332530042|ref|ZP_08405992.1| hypothetical protein HGR_08964 [Hylemonella gracilis ATCC 19624]
 gi|332040515|gb|EGI76891.1| hypothetical protein HGR_08964 [Hylemonella gracilis ATCC 19624]
          Length = 577

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 96/192 (50%), Gaps = 16/192 (8%)

Query: 81  LLGYISGSILKE----LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKL 129
           +LG IS  +L++       + + I +++  D L+GL N       +            ++
Sbjct: 381 MLGAIS--VLRDNSVARKAAEDAIREMAYYDRLTGLPNRRLLEDRMQQVLASAQRRQTRV 438

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-S 188
           +++F D+D FKQ+ND  GH  GD +++ ++ ++  V        R+GG+EF      + S
Sbjct: 439 AVMFIDLDKFKQVNDRHGHEAGDWLLSEVAKRMRGVLRESDTAARVGGDEFVVLLPDTNS 498

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247
            QEA ++A  +R+ +E   +N   G  + I+ S G+A    + +    +++  D+A+Y  
Sbjct: 499 PQEATLVAEKIRQQLEQPFVN-REGRVLEISSSIGVAMYPDQADNPRDLLHCGDEAMYWV 557

Query: 248 KKSGRNRVVCFS 259
           KK GRN V  F 
Sbjct: 558 KKHGRNAVAVFD 569


>gi|317487171|ref|ZP_07945972.1| GGDEF domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316921572|gb|EFV42857.1| GGDEF domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 535

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 5/173 (2%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHP 149
           +L    ++ + LS  D L+G+ N  A   ++        L+++  D+D+FK  ND FGH 
Sbjct: 362 QLAQERDQYADLSFRDALTGVYNRRALEETMERIPARTPLALLMLDLDFFKNYNDRFGHQ 421

Query: 150 VGDKVIAFLSD-QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            GD  +  ++      +      + R GGEEF     G+ +  A  +A  + + +    +
Sbjct: 422 AGDAALKAVAQATQKALLRDSDRIFRYGGEEFTIILAGAGQYSAMTVAQRILEEVAALDL 481

Query: 209 NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFS 259
                 +  +T+S GIA R   E      ++  ADQALY AK SGRNR+V F 
Sbjct: 482 VHPDSRTGKLTVSIGIAHRSFGEDADICEVLTHADQALYEAKTSGRNRIVLFE 534


>gi|311107002|ref|YP_003979855.1| diguanylate cyclase [Achromobacter xylosoxidans A8]
 gi|310761691|gb|ADP17140.1| diguanylate cyclase, GGDEF domain protein 15 [Achromobacter
           xylosoxidans A8]
          Length = 531

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 113/252 (44%), Gaps = 19/252 (7%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL 81
            SP   ++  ++  +I    +  +    L Y   +P   L   +    S     + I  L
Sbjct: 273 LSPLRELLGEALRSAIPAIALTLLLVCGLAYAIASPLSRLTRAMTVGKS---AGVDIGRL 329

Query: 82  LGYISGSI---------LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKL 129
             + + +          L +      R++  +  D ++GLLN  A    L +Y      +
Sbjct: 330 NAWYAEADTLRDAVQLTLDQHQDEVGRLNTQALTDPMTGLLNRRAMTDVLDAYAADGTPV 389

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  D+D+FK+IND FGH  GDKV+  L++ +           R+GGEEF A     + 
Sbjct: 390 AVIAMDLDHFKRINDAFGHMTGDKVLIALAEVIRAGLRDQDRAFRVGGEEFIALLPTGAA 449

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAK 248
            +A  +A  LR  +    +    G    +T+S GIA      +  S +I RAD+ALY +K
Sbjct: 450 SQAGEVAERLRAAVARRLMPDGVG---RVTVSIGIALWPQDGDSASDVIQRADEALYESK 506

Query: 249 KSGRNRVVCFSD 260
           ++GRNRV  + D
Sbjct: 507 QTGRNRVTLWHD 518


>gi|268679295|ref|YP_003303726.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617326|gb|ACZ11691.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 172

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 10/168 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q S  D L+GL N   F   +         Y   L+++  D+D+FK+IND +GH VGD
Sbjct: 2   LKQESITDGLTGLRNRRYFDQRISEEVALSRRYKLPLTLMLVDVDHFKKINDTYGHTVGD 61

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  LS  ++ V      V R GGEE       +++++A ILA  LR+ +E +++   +
Sbjct: 62  EVLKKLSQIILSVVRDSDIVARYGGEEIVIITPNTTKEDAGILAERLREKVEQTKVATIA 121

Query: 213 GPS--IHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                + +TIS G+ A          ++  +DQALY+AKK GRNRVV 
Sbjct: 122 TTQEVVQVTISIGVCALSAVITDQEALLEESDQALYLAKKYGRNRVVI 169


>gi|115523856|ref|YP_780767.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
 gi|115517803|gb|ABJ05787.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
          Length = 366

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 73/268 (27%), Positives = 118/268 (44%), Gaps = 22/268 (8%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV 72
           LC    L +      + +  + F++    ++   +  +     TP      IL      +
Sbjct: 94  LCSFSALRATQRQALLAWSMMAFAV--TALLMAVDQPMSLPHATPLERFATILA-----L 146

Query: 73  IISITISLLLGYISGSILK-------ELFISYNRISQLSRIDCLSGLLNHSAFISSL--- 122
           ++++   + LG +S S+         EL  +Y  I +L+ +D L+G  N    +  L   
Sbjct: 147 VLALGRCMFLGMVSASLRDKLYKRGVELKQAYETIEELAELDELTGSFNRRCIMRVLDDE 206

Query: 123 ----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                     LSI   D+D+FK+IND +GHP GD+V+   +  +          GR GGE
Sbjct: 207 IVHARRIGTPLSIALIDLDWFKRINDVYGHPAGDEVLKTFAITIFANIRAIDKFGRYGGE 266

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EF      + +  A  L   LR I+ +   +  S   + +T+SAGIA     E   T++ 
Sbjct: 267 EFLLILPATPQDAAVQLLERLRGIVADLDWSAFSEGML-VTLSAGIATLTENETSDTLLA 325

Query: 239 RADQALYVAKKSGRNRVVCFSDIENNTC 266
           RAD ALY AK +GRNR+   S   + T 
Sbjct: 326 RADCALYEAKANGRNRIAASSPEASATA 353


>gi|71279208|ref|YP_270299.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71144948|gb|AAZ25421.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 722

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 71/267 (26%), Positives = 117/267 (43%), Gaps = 40/267 (14%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYIL--------------------V 66
           ++I  ++   IF+   IF A +  + I ++P   L Y L                    +
Sbjct: 457 YLIILAML--IFLLVAIFFALVLNYSI-ISPVRKLTYALNDMSEGQNNIHFNHIDSKDEI 513

Query: 67  ENLSLVIISITISLLLGYISGSILKE-------LFISYNRISQLSRIDCLSGLLNHSAFI 119
            ++ L    +   LL G +  + + +            +   QL+  D L+G +N   F 
Sbjct: 514 GSMQLAFEKLRRKLLQGDVYKATVSQQQKEIKYRKSQQDHFQQLALTDALTGAVNRHHFN 573

Query: 120 SSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L         +   LSI+  DID+FK +ND +GH VGD+V+       V    +   V
Sbjct: 574 EVLDQEIANVNNHGSPLSIMLLDIDHFKSVNDRYGHGVGDEVLVMFYQTCVEAVRSSDVV 633

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-- 230
            R+GGEEF      +    A   A  LR+ I   ++NI++   I +T+S G+++   +  
Sbjct: 634 ARIGGEEFVIIMPNTQLVNAQKFAERLRQKIAKLELNIANNQ-ISVTVSIGVSQWQSEYF 692

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVC 257
               T +  AD++LY AK SGRN+VV 
Sbjct: 693 TNAETFVAHADKSLYQAKNSGRNKVVV 719


>gi|261227550|ref|ZP_05941831.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str.
           FRIK2000]
          Length = 600

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 398 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 457

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 458 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 517

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 518 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 577

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 578 LADRRLYLAKQAGRNRV-FASD 598


>gi|253997727|ref|YP_003049790.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Methylovorus sp. SIP3-4]
 gi|253984406|gb|ACT49263.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylovorus sp. SIP3-4]
          Length = 1237

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 11/181 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
           G  + E+     RI  ++  D L+ L N +  +  + S         +  S++  D+D F
Sbjct: 786 GRDITEIVEYRQRIHDMAFYDALTRLPNRAMLLEQMRSGILAAAGAQQVFSLMVLDLDRF 845

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILAND 198
           KQIN+  GH  GD ++   + +L         + R+GG+EF      G +E E   +A  
Sbjct: 846 KQINETLGHSTGDLLLCEAAARLQDHLREGDMLARMGGDEFVLLLRPGDAEPELIAMAQT 905

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L +     Q  + +G  + ++ S GIA      +   T++  AD A+Y AK  GRN    
Sbjct: 906 LIQAFR--QPFLVAGRELFVSTSVGIARYPTDSQDADTLLKFADTAMYHAKAQGRNNFQF 963

Query: 258 F 258
           +
Sbjct: 964 Y 964


>gi|228909876|ref|ZP_04073697.1| Sensory box/GGDEF family protein [Bacillus thuringiensis IBL 200]
 gi|228849711|gb|EEM94544.1| Sensory box/GGDEF family protein [Bacillus thuringiensis IBL 200]
          Length = 430

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ +D L+ + N   F   L          +EK++I+ FDID FK +
Sbjct: 254 ITELDEIYQEQERLAMVDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTV 313

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 314 NDTYGHDFGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 373

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q    S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 374 IETKQFTGIS----KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 425


>gi|94263455|ref|ZP_01287268.1| GGDEF:GAF:Histidine kinase, HAMP region [delta proteobacterium
           MLMS-1]
 gi|93456185|gb|EAT06324.1| GGDEF:GAF:Histidine kinase, HAMP region [delta proteobacterium
           MLMS-1]
          Length = 595

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 12/185 (6%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIV 132
           LL  ++  I  E+ ++  R+ +L+  D L+GL +     +++  + +          S++
Sbjct: 409 LLAAVAEQI--EITLANARLYRLAITDGLTGLYSKRYCETAINKFRDTHAADQGRLFSVL 466

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK +ND  GHPVGD+V+  L++ +           R GGEEF    +    + A
Sbjct: 467 MLDLDHFKLVNDTHGHPVGDEVLIQLAELIRGSIRQDDIACRYGGEEF-IILVAEGIKAA 525

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
             +A  L + +        SG  +  TIS G A    H +  + +I  ADQALY AK  G
Sbjct: 526 EQIAERLCRAVAEHVFRCRSGLELRCTISIGGAGFPEHGQNAAEVIAAADQALYQAKNGG 585

Query: 252 RNRVV 256
           RNR  
Sbjct: 586 RNRWQ 590


>gi|146294393|ref|YP_001184817.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
 gi|145566083|gb|ABP77018.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
          Length = 324

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 77/273 (28%), Positives = 124/273 (45%), Gaps = 29/273 (10%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63
              D  + WL  ++ +ES     FM+    F S      +F       +    P  G   
Sbjct: 60  RFPDLPATWL--KQKMES----VFMLKNRAFISWEQRPYVFQ------FKNYRPITGRAD 107

Query: 64  ILVENLSLVIISIT------ISLLLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNH 115
            + +N++L+ ++        IS+++  ++   +   +L  +  ++ +LS+ D L+ L N 
Sbjct: 108 FMYQNVTLLPLASLTGKITHISVIVYDVTDIAVNKLQLKAANEQLERLSQTDGLTQLHNR 167

Query: 116 SAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
             +   L         YN+  S+V  DID FK IND +GH  GDKVI  ++  L      
Sbjct: 168 RHWQLCLEHEFDLYARYNDIASLVMIDIDNFKYINDTYGHVAGDKVIQHIAHILSQSLRE 227

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
               GR GGEEFA     +S ++A      LR+ I  S I +     I +T+S G+ E  
Sbjct: 228 TDCAGRYGGEEFAVVMPKTSGEDALHFTERLREKIAESTI-VYESLKIKVTVSLGVCEIG 286

Query: 229 -HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            H    S+ I  +D+ALY AK+ GRN  V  ++
Sbjct: 287 KHISSSSSWISCSDKALYEAKQKGRNCSVLHTE 319


>gi|299541822|ref|ZP_07052145.1| diguanylate cyclase with PAS/PAC sensor [Lysinibacillus fusiformis
           ZC1]
 gi|298725560|gb|EFI66201.1| diguanylate cyclase with PAS/PAC sensor [Lysinibacillus fusiformis
           ZC1]
          Length = 514

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 9/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           + + EL     ++ QL+  D L+ + N  AF              +   +++  DID+FK
Sbjct: 335 TDITELKELQRQLEQLAFYDELTQIYNRRAFFQQCNQAYSEARESSSAFTVILMDIDHFK 394

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GH +GD+++  +      V        R GGEEF  A   S+  E   LAN L 
Sbjct: 395 NVNDTYGHAIGDQLLVHVVKVCQSVLKNGELFARYGGEEFVLALKDSTLLEGQALANVLC 454

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E+  +  + G  I  TIS G+AE     E +  ++  AD+ALY AK++GRNRV  F
Sbjct: 455 NSVESQPLMTAEGA-IRATISCGVAEGTKGQETLYQLLNNADKALYAAKQAGRNRVHVF 512


>gi|294665593|ref|ZP_06730873.1| sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
            10535]
 gi|292604642|gb|EFF48013.1| sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
            10535]
          Length = 1065

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 8/176 (4%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
            +L  L I  +   + +  D L+GL N   F  +L             L +   DID+FK+
Sbjct: 890  LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSARPLVLAILDIDHFKR 949

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            IND++ H  GD V+  +   L           RLGGEEFA     ++  EA  L   +R 
Sbjct: 950  INDHYSHASGDAVLHEVGVLLTAAARASDLPARLGGEEFALLLADTTLDEANALCLRIRA 1009

Query: 202  IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +  +++ N +S   + +T SAG+A     +  S+++ RAD ALY AK +GR+R+  
Sbjct: 1010 LF-HARHNWASVEGLQVTFSAGVAALRDDDTGSSLMQRADHALYEAKSAGRDRICV 1064


>gi|56461594|ref|YP_156875.1| intracellular signaling protein [Idiomarina loihiensis L2TR]
 gi|56180604|gb|AAV83326.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Idiomarina
           loihiensis L2TR]
          Length = 462

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 103/210 (49%), Gaps = 13/210 (6%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           PF  LE  +V  +   + ++            I  +L    + ++ ++  D L+GL N S
Sbjct: 257 PFTELEIEMVRMMGTALETVIAE-------QKIRSDLIRQRDDMALIAYTDALTGLKNRS 309

Query: 117 AFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           A +  L              +   D D+FK IND +GH +GDKV+   S+ +     +  
Sbjct: 310 AGMEILEQSLVRQNGGRGFVVSVIDFDHFKTINDTYGHDIGDKVLIAGSEAMSAAVRSSD 369

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            V R+GGEEF      +  + A+ +   +R  +E + + + SG  I+ T+S G +E    
Sbjct: 370 SVVRVGGEEFMVVLAYADHESASQVLERVRAAVEETVVTLDSGEVINPTVSVGASESHPD 429

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + +S+I  RADQALY AK+ GRNRVV  S+
Sbjct: 430 DDVSSIYRRADQALYKAKREGRNRVVWASE 459


>gi|321314637|ref|YP_004206924.1| putative diguanylate cyclase or phosphodiesterase [Bacillus
           subtilis BSn5]
 gi|320020911|gb|ADV95897.1| putative diguanylate cyclase or phosphodiesterase [Bacillus
           subtilis BSn5]
          Length = 359

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 71/235 (30%), Positives = 113/235 (48%), Gaps = 18/235 (7%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           F + I T   I+  F F I L  +         +L   IISI   +L  YI         
Sbjct: 131 FYLLIITNSLISFSFYFLIDLHSYE-------LHLYFWIISIAGGMLSLYIIDH-ETNAH 182

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQINDNF 146
           + + +    +  D L+G+ N   F  +  +  ++         ++++ DID+FK IND +
Sbjct: 183 LLFKQYKFQAHFDFLTGVYNRRKFEETTKALYQQAADTPHFQFALIYMDIDHFKTINDQY 242

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+V+  L  +L           R+GGEEFA      S  +AA +A  +R  + ++
Sbjct: 243 GHHEGDQVLKELGLRLKQSIRNTDPAARIGGEEFAVLLPNCSLDKAARIAERIRSTVSDA 302

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            I +++G  + +TIS G A   +  E   ++   ADQ LY AK++GRNRV CFS+
Sbjct: 303 PIVLTNGDELSVTISLGAAHYPNNTEQPGSLPILADQMLYKAKETGRNRV-CFSE 356


>gi|307726170|ref|YP_003909383.1| diguanylate cyclase [Burkholderia sp. CCGE1003]
 gi|307586695|gb|ADN60092.1| diguanylate cyclase [Burkholderia sp. CCGE1003]
          Length = 607

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 70/257 (27%), Positives = 118/257 (45%), Gaps = 25/257 (9%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLT-PFYGLEYI---LVENLSLVIISITISLLLG 83
           ++  SI   + I +V+ +    LF   LT P + L Y    L    ++  + +  +  +G
Sbjct: 320 LLGDSIIHMVLIFSVLAVLLAILFARALTRPLHMLAYAATHLFAEHAMETLPVKRTDEIG 379

Query: 84  YISG---SILKE-------LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YN 126
            ++     + +E       L +    +  L+  D L+GL N + F+  L           
Sbjct: 380 VLARGFDRLRREIRSQMDALHVKQRELVHLATHDVLTGLPNRTLFMEKLERAIQDATRRR 439

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           E L+++F D+D FKQIND FGH VGDKV+  ++ +L  V  +   V RLGG+EF     G
Sbjct: 440 EGLAVLFVDLDRFKQINDQFGHSVGDKVLVAVARRLKQVLHSADVVARLGGDEFIVLIEG 499

Query: 187 SSEQEAAI-LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQAL 244
               EAA  +A+ +   +      +  G  + +  S GI++          ++  AD A+
Sbjct: 500 PRSAEAAPGVASRIMTTLNEEI--VMDGQGMTVGASIGISQFPDDSGTAEELLLNADAAM 557

Query: 245 YVAKKSGRNRVVCFSDI 261
           YVAK  GR   + + D+
Sbjct: 558 YVAKSGGRCAYLRYQDV 574


>gi|152990443|ref|YP_001356165.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
 gi|151422304|dbj|BAF69808.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
          Length = 483

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 59/187 (31%), Positives = 88/187 (47%), Gaps = 8/187 (4%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKLS 130
           ++   + + L ++    LK+  I  + +   +  D L+ L N  A  S L +   N +  
Sbjct: 302 LLGFVLLIALFFVFFLYLKQSHIYIDTLKDAALKDSLTHLFNRRALKSFLKTLKPNSRFG 361

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           I+F DID+FK  ND +GH  GD+V+  ++  L        F+ R GGEEF       S +
Sbjct: 362 IIFCDIDHFKNFNDRYGHDKGDEVLQEVAKTLSKFVRKDDFLARWGGEEFLIVLPNISLE 421

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +    A  +R+ IEN          I +T S G+        I   I RAD+ALY AK+ 
Sbjct: 422 DLKNRAEKMRQAIENI------SKDIPVTCSFGVTVCEDASHIDECIKRADEALYRAKEK 475

Query: 251 GRNRVVC 257
           GRNRV  
Sbjct: 476 GRNRVEV 482


>gi|170734510|ref|YP_001766457.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3]
 gi|169817752|gb|ACA92335.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3]
          Length = 452

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 64/259 (24%), Positives = 120/259 (46%), Gaps = 13/259 (5%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           L +W+ +   L +    T  +  ++   + IA +  + +  L  +  T  + + + +   
Sbjct: 196 LVVWILNVLALVAVL-VTGRLRTTLDLWLAIAVLACLTDTTLNLLS-TNRFTVGWYVARV 253

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------S 121
            S+    + + +L   ++  + ++LF ++  + + S  D L+G  N S F          
Sbjct: 254 FSMFTPGVLVCVLAWEVT-MLYQQLFEAHATLIRSSARDGLTGAFNRSHFNDHFHTLFLQ 312

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEF 180
                E LS++  D+D+FK  ND FGH  GD  +  +++ L      P   V R GGEEF
Sbjct: 313 ARRQGEPLSLLMVDVDHFKAYNDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEF 372

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIY 238
           A     +  + A ++A+++R+ +    + +   P+  +++S G A     +      +I 
Sbjct: 373 AIVLPNTGARGARVVADEVREAVLRLDLAMPDSPAGRVSVSVGCATVSADDLSTPDALIE 432

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD ALY AK +GRNRVV 
Sbjct: 433 AADAALYRAKDAGRNRVVV 451


>gi|228922797|ref|ZP_04086095.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836852|gb|EEM82195.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 430

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          +EK++I+ FDID FK +
Sbjct: 254 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRTDEKIAIILFDIDNFKTV 313

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 314 NDTYGHDFGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 373

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q    S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 374 IETKQFTGIS----KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 425


>gi|258404570|ref|YP_003197312.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
 gi|257796797|gb|ACV67734.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
          Length = 659

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 15/210 (7%)

Query: 56  TPFYGLEYILVENLSLVIISITISLL------LGYISGSILKELFISYNRISQLSRIDCL 109
           TPF G      ++  LV + IT SL+      +  + G  + E   S  RI  L+  D L
Sbjct: 420 TPFVGERSYRTKSGHLVPMEITASLVHYQGRRVVSVVGRDISERKKSEERIRYLAYHDQL 479

Query: 110 SGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GL N + F+  L           +KL + F D++ FK IND  GH VGD+++  ++++L
Sbjct: 480 TGLPNRTLFLDRLEQSLKEARRNRDKLGLFFLDLNDFKHINDCHGHKVGDRLLLQVAERL 539

Query: 163 VVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                    V RLGG+EF      G+S      +A  L + I+   +       + I +S
Sbjct: 540 QSSLREMDTVARLGGDEFVVIVKGGASRHNCRKVARKLIQSIDTPFLVEEIDQEVRIGLS 599

Query: 222 AGIAERCHK-EPISTIIYRADQALYVAKKS 250
            GI+        +  +I  AD A+Y AK++
Sbjct: 600 IGISIFLDDAATLEELIQHADTAMYAAKRN 629


>gi|307152914|ref|YP_003888298.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
 gi|306983142|gb|ADN15023.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
          Length = 484

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 11/195 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124
            I  ++    +      + +EL  +   + +++ +D L+ + N   F          L  
Sbjct: 287 FITQLSKQTAIAIQQSKLYQELKTANQELERIAYLDSLTQIPNRRQFDLTIKREWFRLRR 346

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAA 183
               LS+V  DID+FKQ ND +GHP GD  +  ++  +      +   V R GGEEFA  
Sbjct: 347 QQLPLSLVLCDIDHFKQYNDFYGHPQGDLCLKQVAQGIASNLKRSADLVTRYGGEEFAVI 406

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAGIAERCHKEPI--STIIYRA 240
              +    A  +   +++ I   ++     G   ++++S GIA       +    +I  A
Sbjct: 407 LPNTDLDGAIHVVKQIQQAIAQLKLPHQGLGLEKYVSLSMGIATMIPGPNLSYEELISLA 466

Query: 241 DQALYVAKKSGRNRV 255
           D+ALY AK +GRNR 
Sbjct: 467 DKALYKAKANGRNRF 481


>gi|330938536|gb|EGH42121.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 424

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 119/285 (41%), Gaps = 36/285 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL------FYIG 54
           + +S    L +WL  +    +     +M    + +++F+ +   +   +L          
Sbjct: 133 LEQSYPVELQVWLA-DIRWPALHGA-WMSLIQLSYAMFLVSFAVLIWQYLEKPRPLHAAQ 190

Query: 55  LTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           +    GL + L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL 
Sbjct: 191 IVGLLGLFWALPKTFILPFTLNILCSQVMLMIAAAVAHEAY-------QMAFRDELTGLP 243

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A    +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        
Sbjct: 244 GRRALNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAY 303

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------------------- 214
           R GGEEFA      S  E       +R+ I + +I + +                     
Sbjct: 304 RYGGEEFAIVFAAKSIDECMPHLEAIRETIASYEIQLRNKNDRPQDDQQGRQRRSGAQAG 363

Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S+ +T+S G+AER         ++  ADQALY AK +GRN VV +
Sbjct: 364 SVSVTVSIGVAERQPEHRTPEEVLKSADQALYAAKGAGRNCVVAY 408


>gi|330994533|ref|ZP_08318457.1| Putative signaling protein [Gluconacetobacter sp. SXCC-1]
 gi|329758387|gb|EGG74907.1| Putative signaling protein [Gluconacetobacter sp. SXCC-1]
          Length = 696

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 85/183 (46%), Gaps = 7/183 (3%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQIN 143
              + E   + +++  L+  D L+GL N + F S L +        +++  D+DYFK +N
Sbjct: 262 ADDVTEQRNAQHQVELLAHYDPLTGLANRALFSSRLEAACAAGSTATLLCIDLDYFKTVN 321

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD ++  +S++L         V RLGG+EFA        Q  A L    R+I+
Sbjct: 322 DVYGHAAGDSLLRLVSERLRACSRPGDLVARLGGDEFAIIWPDVPAQ--AELTTRAREIV 379

Query: 204 EN-SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E  S+  I  G  I I  S G A      E   T++  AD ALY AK  GRN    F   
Sbjct: 380 ETVSRPYIIDGHHIVIGASVGSALYPRDAEASETLLQYADIALYRAKSLGRNGFQFFDQE 439

Query: 262 ENN 264
             +
Sbjct: 440 LRD 442


>gi|313199791|ref|YP_004038449.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Methylovorus sp. MP688]
 gi|312439107|gb|ADQ83213.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylovorus sp. MP688]
          Length = 1237

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 12/182 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDY 138
           G  + E+     RI  ++  D L+ L N +  +  + S          +  S++  D+D 
Sbjct: 785 GRDITEIVEYRQRIHDMAFYDALTRLPNRAMLLEQMRSGILAAAAGAQQVFSLMVLDLDR 844

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILAN 197
           FKQIN+  GH  GD ++   + +L         + R+GG+EF      G +E E   +A 
Sbjct: 845 FKQINETLGHSTGDLLLCEAAARLQDHLREGDMLARMGGDEFVLLLRPGDAEPELIAMAQ 904

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            L +     Q  + +G  + ++ S GIA      +   T++  AD A+Y AK  GRN   
Sbjct: 905 TLIQAFR--QPFLVAGRELFVSTSVGIARYPTDSQDADTLLKFADTAMYHAKAQGRNNFQ 962

Query: 257 CF 258
            +
Sbjct: 963 FY 964


>gi|300867789|ref|ZP_07112432.1| GGDEF domain protein [Oscillatoria sp. PCC 6506]
 gi|300334206|emb|CBN57604.1| GGDEF domain protein [Oscillatoria sp. PCC 6506]
          Length = 359

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 93/212 (43%), Gaps = 17/212 (8%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y L++   L+I    I  L   +     +EL   Y ++ + + +D L+ + N   F   L
Sbjct: 143 YRLLDVHELLIAQSQIHALATQLLNQAYQELDEVYKQLQRQACLDGLTQVANRRRFDEYL 202

Query: 123 GSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGR 174
                        L+++  D+DYFK  ND +GH  GD  +  ++  +     +P   V R
Sbjct: 203 RQEWLQMARVRSPLALIMADVDYFKLYNDTYGHQQGDDCLKAVALAITQATRSPSDLVAR 262

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKE-- 231
            GGEEFA     +    A ++  D+R  ++   I     P+   +++S G+A     +  
Sbjct: 263 YGGEEFAIVLPNTDASAALLVGEDIRSRLKAMAIAHQGSPACECVSLSLGVACTVPDDEN 322

Query: 232 ------PISTIIYRADQALYVAKKSGRNRVVC 257
                     +I  AD ALY AKK GR+RVV 
Sbjct: 323 GGSYLCSPEKLIAAADCALYQAKKQGRDRVVL 354


>gi|289676144|ref|ZP_06497034.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 828

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 102/234 (43%), Gaps = 19/234 (8%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS-------LLLGYIS-GSILKELF 94
            F A ++        + G      +N  L    +TIS       LL  +++  + +  L 
Sbjct: 319 AFYAAMWHQLTAEGHWQGEISNRRKNGELYPSWLTISAVRNKDDLLTHFVAVFADISSLK 378

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147
            +  R+   +  D L+GL N   F S L +            +++F D+D FK IND+ G
Sbjct: 379 HAQARLDYQAHHDPLTGLPNRILFESRLQAALLHSEESGSLGAVLFLDLDRFKHINDSLG 438

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206
           HPVGD ++  ++ +L         V RLGG+EF     G     +A  +AN L      +
Sbjct: 439 HPVGDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQASDAQAIANKLLACF--N 496

Query: 207 QINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               +    ++I+ S G          ++T++  AD A+Y +K  GRNRV  ++
Sbjct: 497 TPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKAKGRNRVESYT 550


>gi|192292680|ref|YP_001993285.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
 gi|192286429|gb|ACF02810.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
          Length = 379

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 69/273 (25%), Positives = 111/273 (40%), Gaps = 36/273 (13%)

Query: 19  LESFSPHTFM--IYFSIFFSIFIATV-------------IFIANIFLFYIGLTPFYGLEY 63
           +  F+P  F      +  F IF  T+             I  A ++   +     +   +
Sbjct: 105 IGQFAPEPFAGRYMMAALFVIFAGTLVSALPWRATRIMTIAAAALYTLIVVSGLRWPPAW 164

Query: 64  ILVENLSLVIISITISL--------------LLGYISGSILKELFISYNRISQLSRIDCL 109
             ++ + L +++  I+L               +      + +EL  +   + +LS  D L
Sbjct: 165 SNIDLVGLCLVTCVIALRARQRKDAQIAELQQIRRRDALLKQELRQANAALGRLSTTDPL 224

Query: 110 SGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           +G+ N       +      L      S++  D+D+FK  ND+ GH  GD  +  +   + 
Sbjct: 225 TGVFNRRYLDELIEQETASLVPSLGQSVLMIDVDHFKLFNDHGGHAAGDSCLQQIVTAVR 284

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISA 222
               +   V R GGEEFA    G  E E    A  L   + + QI     G    +TIS 
Sbjct: 285 RNLRSCDVVVRYGGEEFAVVLPGLDEAELRETAERLCHAVSDLQIPHPGLGQGRVVTISV 344

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           GIA     E ++  I RADQ+LY AK++GRNRV
Sbjct: 345 GIAPPVPAETLADAIQRADQSLYRAKRAGRNRV 377


>gi|146338270|ref|YP_001203318.1| putative diguanylate cyclase/phosphodiesterase (EAL)
           [Bradyrhizobium sp. ORS278]
 gi|146191076|emb|CAL75081.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
           [Bradyrhizobium sp. ORS278]
          Length = 789

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 60/191 (31%), Positives = 88/191 (46%), Gaps = 10/191 (5%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSL----GSYNEKLSIVFFD 135
             +    + E   +  RIS L+R D L+ L N  +F   I  L      + E  +++F D
Sbjct: 328 AVVLLEDITERQHAEARISHLARYDELTTLPNRVSFRDEIERLLKIPQRHGELSALLFVD 387

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAI 194
           +D FKQ+ND  GHP GD+++  +S++L  +     FV R GG+EF        S  +AA+
Sbjct: 388 LDRFKQVNDTLGHPCGDQLLCAVSERLRDMLRPEDFVARFGGDEFVVFQRNIRSNDDAAV 447

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           LA  +   +  S+        + I  S GIA         T++  AD ALY AK  GR  
Sbjct: 448 LARRIVDQL--SERYKIDNHLVEIGASVGIAMTAPGISADTLLKNADMALYRAKAEGRGT 505

Query: 255 VVCFSDIENNT 265
              F D    T
Sbjct: 506 FCFFRDELAQT 516


>gi|145593302|ref|YP_001157599.1| diguanylate cyclase [Salinispora tropica CNB-440]
 gi|145302639|gb|ABP53221.1| diguanylate cyclase [Salinispora tropica CNB-440]
          Length = 753

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 11/172 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHP 149
           +    +LS  D L+GL N+     SL    E+       LS++  D+D FK +ND  GH 
Sbjct: 513 HEETQRLSLTDPLTGLWNYRYLRQSLRREVERATRFGRMLSVLALDLDRFKHVNDTHGHA 572

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+   + ++           RLGGEEF      +    AAI+A  L   + ++ I 
Sbjct: 573 AGDRVLVEFARRIRGEIREVDLAFRLGGEEFVVLLPETDVVGAAIVAERLGAAVRDTPIA 632

Query: 210 ISS---GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +        + +T+S G+A    H      ++  AD+ALYVAK SGR+    
Sbjct: 633 VDGLGVPVLVPVTVSIGVAVHPDHGGTGQEVLNAADEALYVAKASGRDTCRV 684


>gi|283853435|ref|ZP_06370679.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
 gi|283571155|gb|EFC19171.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
          Length = 530

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 13/178 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           E+        +LS +D L+GL N           + +        + +  D+D+FK IND
Sbjct: 350 EVRGHIEETERLSVLDALTGLYNRRFLFSGGAKLLDASARAGRPCTCLMLDLDHFKAIND 409

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH  GD+V+A ++ ++         V R GGEEFA    GS  Q  A LA  +R+ + 
Sbjct: 410 SHGHRTGDQVLAHVAGRIAGAVRRSDLVARYGGEEFAVLLTGSDRQHGAELAERIRQALA 469

Query: 205 NSQINISSGPSIHITISAGIAERCH-----KEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++   +     + +T+S G+AE        +  +  ++ RAD+ALY AK +GR+RV  
Sbjct: 470 DAPCQVGDAY-LPVTVSIGVAETRERVQFGESALDDLLARADKALYAAKAAGRDRVAA 526


>gi|317154323|ref|YP_004122371.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
 gi|316944574|gb|ADU63625.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
          Length = 457

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 9/182 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
             +     +   +  +S+ D L+ + N   F+            ++E  +I+  DID+FK
Sbjct: 131 QDITRRKQAEQELLLVSQQDPLTKVANRRFFMEHATRELTRGKRFHEPQAILIIDIDHFK 190

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH VGD+V+  ++             GR+GGEEFAA  L +++  A I+A  +R
Sbjct: 191 TINDKHGHDVGDEVLKAMATACSKALREVDVFGRIGGEEFAAMLLNTNDSVARIVAERVR 250

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +E   +N+  G  I  TIS G+         +   +  AD+ALY AK+SGRNRV    
Sbjct: 251 ESVERLSVNV-GGKEIPFTISIGLVSFLGGSNTLDDRMKMADKALYRAKESGRNRVEVLV 309

Query: 260 DI 261
           D+
Sbjct: 310 DV 311


>gi|163750968|ref|ZP_02158200.1| sensory box protein [Shewanella benthica KT99]
 gi|161329258|gb|EDQ00256.1| sensory box protein [Shewanella benthica KT99]
          Length = 1104

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 27/227 (11%)

Query: 58  FYGLEYILVENLSLVIISITISLLLG-------YIS-GSILKELFISYNRISQLSRIDCL 109
           + G    L E      + + +S +LG       Y++  S + E   +   + +L+  D L
Sbjct: 633 WTGEREFLREQGGPCPVWLNVSAMLGSKGNITHYVAVFSDITERKRTEADLRRLANYDVL 692

Query: 110 SGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GL N S F + L           EKL+++F D+D FK +ND++GH +GD ++   +++L
Sbjct: 693 TGLPNRSLFSTRLAQSIHSAEHSGEKLALIFLDLDRFKHVNDSYGHSMGDALLVEAANRL 752

Query: 163 VVVFGTPMFVGRLGGEEFAAAA-----LGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
                    + R GG+EF         L +     A L   ++   E        G    
Sbjct: 753 QSCITEEHTLCRFGGDEFVILLRDASNLDTINHICAQLLEQIKTPFELY------GREFF 806

Query: 218 ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           I+ S G++           +I  ADQA+Y AK+ GR     FS   N
Sbjct: 807 ISTSIGVSLWPDDARQAEVLIKNADQAMYHAKEEGRGNFQYFSSERN 853


>gi|262170674|ref|ZP_06038352.1| sensory box/GGDEF family protein [Vibrio mimicus MB-451]
 gi|261891750|gb|EEY37736.1| sensory box/GGDEF family protein [Vibrio mimicus MB-451]
          Length = 428

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 86/181 (47%), Gaps = 11/181 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +LS +D L+ + N   F   L           + LSI+  D+D+FK  N
Sbjct: 241 EQLEAANQELERLSFLDSLTQVANRRRFDEQLHTLWHLHAREGKPLSIILCDVDFFKDYN 300

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH +GD+ +  ++     V       V R GGEEF      + +  A ++A  + + 
Sbjct: 301 DAYGHLMGDETLKQVAIAFTQVANRQSDCVARYGGEEFGILLPNTPQSGAILIAERIHEK 360

Query: 203 IENSQINISSGP-SIHITISAG-IAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFS 259
           + +  I  +    +  IT+S G +    H E +   I+  ADQALY AK +GRN+   + 
Sbjct: 361 MRSLAIPHAHSKIADRITVSLGMVTHIPHPEDVPEQILALADQALYQAKANGRNQTSIYE 420

Query: 260 D 260
           D
Sbjct: 421 D 421


>gi|117624095|ref|YP_853008.1| hypothetical protein APECO1_994 [Escherichia coli APEC O1]
 gi|218558812|ref|YP_002391725.1| diguanylate cyclase [Escherichia coli S88]
 gi|115513219|gb|ABJ01294.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|218365581|emb|CAR03308.1| putative diguanylate cyclase [Escherichia coli S88]
          Length = 564

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGASLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 542 LADRRLYLAKQAGRNRVCA 560


>gi|114330442|ref|YP_746664.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Nitrosomonas eutropha C91]
 gi|114307456|gb|ABI58699.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Nitrosomonas eutropha C91]
          Length = 791

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 87/183 (47%), Gaps = 10/183 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFK 140
           + + ++  S  +++QL+  D L+GL N           I     +   + +++ D+D FK
Sbjct: 344 TDISQIKQSEAQLAQLAHYDPLTGLPNRLLAQSQLHQAIERAQRHGRLVGVLYIDLDRFK 403

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
            +ND+ GHPVGD+++  L++++         + RLGG+EF           + A +A  L
Sbjct: 404 NVNDSLGHPVGDELLIKLAERMKKRVREEDTLARLGGDEFLLVLEDVRDLGDPAFVAQSL 463

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
             ++  S   + SG  I I  S GI+         + +I  +D A+Y AKK GRN     
Sbjct: 464 INLL-TSPFVLPSGHEIFINASIGISLFPEDASNATELIQHSDMAMYQAKKEGRNTYRYH 522

Query: 259 SDI 261
           ++ 
Sbjct: 523 TEA 525


>gi|95929074|ref|ZP_01311819.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95134975|gb|EAT16629.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 920

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 14/198 (7%)

Query: 78  ISLLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNE 127
           I L  G++  +I++   E   + +++   +  D L+GL N       L         +  
Sbjct: 463 IDLDRGHLVQAIIRDISERKAAEDQLVHQAYHDPLTGLPNRLLISDRLKLAIAKARRHKT 522

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           +  ++  D+D FK IND  GH VGD+++  L+ ++         V R GG+EF       
Sbjct: 523 QAVLLLLDLDRFKNINDTLGHAVGDRILTTLAQRMQETLRDTDTVARFGGDEFLVLLEDI 582

Query: 188 SE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALY 245
            E  +   LA  L  ++  SQ  +  G  + +T S GI+        +  +I  AD A+Y
Sbjct: 583 RELSDVVSLAQKLSDLV--SQPVLIDGEEMCLTTSVGISVAPEDSIEVDQLIRFADTAMY 640

Query: 246 VAKKSGRNRVVCFSDIEN 263
            AK+ GRN    ++   N
Sbjct: 641 RAKEKGRNNFQFYTPDMN 658


>gi|327189541|gb|EGE56694.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 384

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 60/234 (25%), Positives = 111/234 (47%), Gaps = 19/234 (8%)

Query: 31  FSIFFSIFIAT-VIFIANIFLFYIGLT----PFYG---LEYILVENLSLVIISITISLLL 82
            ++  +++I T VIF A   L   G      PF G     ++ V  ++ +++     +L+
Sbjct: 151 AALLVALYICTAVIFAARSILAATGEIGGPDPFGGSVVHSWMAVSAVAFIMLRSMAMVLM 210

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-EKLSIVFFDIDYFKQ 141
                        S N++++L+  D L+G LN         +   + +S++  DID+FKQ
Sbjct: 211 AA---------ERSRNQLTELAHHDPLTGALNRGGLAQHASALGSQPISLLIMDIDHFKQ 261

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD+++   +     +      + R GG+EF A     S ++A  +A  +R 
Sbjct: 262 LNDRHGHAAGDEILRLFARVSRGIMRPQDLLARQGGDEFLAVLKNLSREDAMAIAERIRL 321

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                 +      ++  T+S G+A R       +++++AD+ALY +K+ GRNRV
Sbjct: 322 EFAAVVMQRPD-LAVFPTLSIGVATRISGGDFESLMHKADEALYRSKREGRNRV 374


>gi|16077977|ref|NP_388793.1| diguanylate cyclase or phosphodiesterase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221308751|ref|ZP_03590598.1| hypothetical protein Bsubs1_05043 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313073|ref|ZP_03594878.1| hypothetical protein BsubsN3_04984 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317999|ref|ZP_03599293.1| hypothetical protein BsubsJ_04928 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322273|ref|ZP_03603567.1| hypothetical protein BsubsS_05029 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|1724005|sp|P54595|YHCK_BACSU RecName: Full=Uncharacterized protein yhcK
 gi|1239987|emb|CAA65695.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633235|emb|CAB12740.1| putative diguanylate cyclase or phosphodiesterase [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 359

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 71/235 (30%), Positives = 113/235 (48%), Gaps = 18/235 (7%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           F + I T   I+  F F I L  +         +L   IISI   +L  YI         
Sbjct: 131 FYLLIITNSLISFSFYFLIDLHSYE-------LHLYFWIISIAGGMLSLYIIDH-ETNAH 182

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQINDNF 146
           + + +    +  D L+G+ N   F  +  +  ++         ++++ DID+FK IND +
Sbjct: 183 LLFKQYKFQAHFDFLTGVYNRRKFEETTKALYQQAADTPHFQFALIYMDIDHFKTINDQY 242

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+V+  L  +L           R+GGEEFA      S  +AA +A  +R  + ++
Sbjct: 243 GHHEGDQVLKELGLRLKQTIRNTDPAARIGGEEFAVLLPNCSLDKAARIAERIRSTVSDA 302

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            I +++G  + +TIS G A   +  E   ++   ADQ LY AK++GRNRV CFS+
Sbjct: 303 PIVLTNGDELSVTISLGAAHYPNNTEQPGSLPILADQMLYKAKETGRNRV-CFSE 356


>gi|330900691|gb|EGH32110.1| GGDEF domain-containing protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 724

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 11/194 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------ 130
           T ++LL        +EL  +  R+   +  D L+GL N S     L    +         
Sbjct: 271 TANVLLEARVRDRTRELDQANARLQHENSHDSLTGLPNRSHLQHRLRQAWQDFCSNGQQV 330

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            ++F D+D FK IND+ GH  GD ++   +++L         + RLGG+EFA  ++ +  
Sbjct: 331 IVMFIDLDRFKMINDSLGHHCGDILLVQAAERLRSCMRERDLLARLGGDEFAVLSIDTPL 390

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
           Q    +A  +    E  Q  +    ++  + S G+  A+    +  + ++  AD A+Y  
Sbjct: 391 QTGTEIAQRILTAFE--QPFVIDDHTVFSSCSIGVVGADSRFHQEPADLLRDADTAMYRV 448

Query: 248 KKSGRNRVVCFSDI 261
           K  GR+    F+  
Sbjct: 449 KNGGRDSFAVFNQA 462


>gi|323705617|ref|ZP_08117191.1| diguanylate cyclase with GAF sensor [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535094|gb|EGB24871.1| diguanylate cyclase with GAF sensor [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 554

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 10/170 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
            IS+ S  D L+   N   F   L             +S++  D+D FKQIND +GH VG
Sbjct: 385 EISKRSITDPLTKTYNRRFFDQILHDSIAKSSIEKTPVSLIMLDVDRFKQINDTYGHMVG 444

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++ ++         V R GGEEF+      + ++A ++A  +R  + +  I   
Sbjct: 445 DAVLREIASRIKSCVRNNDIVARYGGEEFSVILPNLTAEQACVIAERIRYEVSSKPIKTD 504

Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYV-AKKSGRNRVVCFS 259
           +G  I+IT+SAG+A+  +K E    +I  AD+ALY   K  GR+RV  + 
Sbjct: 505 AG-DINITVSAGVADFPNKAESAEKLISHADRALYAGCKTKGRDRVAVYE 553


>gi|302187724|ref|ZP_07264397.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 969

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 11/194 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------ 130
           T ++LL        +EL  +  R+   +  D L+GL N S     L    +         
Sbjct: 516 TANVLLEARVRDRTRELDQANARLQHENSHDSLTGLPNRSHLQHRLRQAWQGFCSNGQQV 575

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            ++F D+D FK IND+ GH  GD ++   +++L         + RLGG+EFA  ++ +  
Sbjct: 576 IVMFIDLDRFKMINDSLGHHCGDILLVQAAERLRSCMRERDLLARLGGDEFAVLSIDTPL 635

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
           Q    +A  +    E  Q  +    ++  + S G+  A+    +  + ++  AD A+Y  
Sbjct: 636 QTGTEIAQRILTAFE--QPFVIDDHTVFSSCSIGVVGADSRFHQEPADLLRDADTAMYRV 693

Query: 248 KKSGRNRVVCFSDI 261
           K  GR+    F+  
Sbjct: 694 KNGGRDSFAVFNQA 707


>gi|291614129|ref|YP_003524286.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Sideroxydans lithotrophicus ES-1]
 gi|291584241|gb|ADE11899.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Sideroxydans lithotrophicus ES-1]
          Length = 1152

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 12/192 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           +G  + +   +   I  L+  D L+ L N    +  L            + +++F D+D 
Sbjct: 694 TGMNITDRKRAEEEIKSLAFYDPLTHLPNRRLLVDRLQHALASSTRSGREGALLFIDLDN 753

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ--EAAILA 196
           FK +ND  GH +GD ++  ++ +L         V RLGG+EF       SEQ  EAA   
Sbjct: 754 FKTLNDTLGHDIGDLLLQQVALRLASCVREGDTVARLGGDEFVVMLEELSEQTLEAAAQT 813

Query: 197 NDL--RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
             +  + ++  +Q  + +      + S G     +K + I  ++ +AD A+Y AKK+GRN
Sbjct: 814 ESIGEKILLTLNQPYLLAAHEYRNSPSIGATLFGNKPQSIEELLKQADIAMYQAKKAGRN 873

Query: 254 RVVCFSDIENNT 265
            +  F      T
Sbjct: 874 TLRFFDPQMQET 885


>gi|237807254|ref|YP_002891694.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Tolumonas auensis DSM 9187]
 gi|237499515|gb|ACQ92108.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Tolumonas auensis DSM 9187]
          Length = 1101

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 95/196 (48%), Gaps = 11/196 (5%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132
           L  Y+S  S + +L  S  +++ L+  D L+ L N +         I      + +++++
Sbjct: 645 LTHYVSVYSDISKLKASEAKLAHLAHHDPLTQLPNRTLLTINLSHAIDLAVRNHHRIALL 704

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QE 191
             D+D FK +ND+FGH +GD ++  ++ +L         + RLGG+EF     G+    +
Sbjct: 705 MLDLDRFKDVNDSFGHQIGDALLQEVARRLRRRVRISDTICRLGGDEFTVLIEGNPALHD 764

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
               A D+ +++++   ++ +G  + I  S GI+    H +    ++ +AD A+Y AK  
Sbjct: 765 VEHFAEDILQLLKD-PFSLPNGREVIIGASIGISLYPEHGQTPKELLQQADAAMYRAKAH 823

Query: 251 GRNRVVCFSDIENNTC 266
           GR+    FSD      
Sbjct: 824 GRSCFRYFSDELTRAA 839


>gi|221197641|ref|ZP_03570688.1| diguanylate cyclase [Burkholderia multivorans CGD2M]
 gi|221204314|ref|ZP_03577332.1| diguanylate cyclase [Burkholderia multivorans CGD2]
 gi|221176480|gb|EEE08909.1| diguanylate cyclase [Burkholderia multivorans CGD2]
 gi|221184195|gb|EEE16595.1| diguanylate cyclase [Burkholderia multivorans CGD2M]
          Length = 522

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 15/210 (7%)

Query: 63  YILVENLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSA 117
           Y    + ++ I S    L LG++  S+L     ++   +   +  L+R D L+GL N   
Sbjct: 298 YAAWYDRAIPIGSAMALLALGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRM 357

Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
              +L     +       LS++F D+D+FK+ ND+ GH  GD  +A +   +      P 
Sbjct: 358 LDVTLAREWRRAARSQHALSLLFVDVDHFKRYNDSQGHQAGDDALAAVGRCIAGCLRRPA 417

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--R 227
            +  R GGEEF           A  +A  +R  I    I         +T S G+A    
Sbjct: 418 DYAARYGGEEFVVILPDIGSDGAVTIAETIRTSILELGIRHDGSAFGCLTASIGVATCRP 477

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              + +   +  AD ALY AK++GRNRVV 
Sbjct: 478 DRDDNMHAALKLADDALYRAKETGRNRVVV 507


>gi|194433689|ref|ZP_03065965.1| diguanylate cyclase (GGDEF) domain protein [Shigella dysenteriae
           1012]
 gi|194418118|gb|EDX34211.1| diguanylate cyclase (GGDEF) domain protein [Shigella dysenteriae
           1012]
 gi|332095505|gb|EGJ00521.1| cellulose synthesis regulatory protein [Shigella dysenteriae
           155-74]
          Length = 558

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 536 LADRRLYLAKQAGRNRVCA 554


>gi|324018838|gb|EGB88057.1| diguanylate cyclase domain protein [Escherichia coli MS 117-3]
 gi|332093088|gb|EGI98152.1| cellulose synthesis regulatory protein [Shigella boydii 5216-82]
          Length = 558

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LYQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 536 LADRRLYLAKQAGRNRVCA 554


>gi|310780005|ref|YP_003968337.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ilyobacter polytropus DSM 2926]
 gi|309749328|gb|ADO83989.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ilyobacter polytropus DSM 2926]
          Length = 799

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 97/206 (47%), Gaps = 13/206 (6%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-- 123
           VE  S  IIS     L   I    + +   +  +I  L+  D L+ L N   F   L   
Sbjct: 337 VEAYSGEIISGKRPRLFSIIH--DITKRREAEKKIKNLAFYDSLTNLPNRRMFSDYLEKS 394

Query: 124 -----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                  + +++++  D+D+FK +ND+FGH +GD ++  ++++L         + RLGG+
Sbjct: 395 IVQGQRNDFQVALLNIDLDHFKHVNDSFGHHIGDLLLIRVAERLRRNLRKNNIICRLGGD 454

Query: 179 EFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTI 236
           EFA      SS QE   ++  + K++E     +     I I+ S G+A        ++T+
Sbjct: 455 EFAVIIEEFSSRQEINFVSGRILKVLEA--PFLIDDKEIFISASIGVAVYPEDGSDVNTL 512

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIE 262
           +  +D A+Y AK  G+N    FS+  
Sbjct: 513 LKNSDLAMYGAKDRGKNGYYFFSEDM 538


>gi|300310067|ref|YP_003774159.1| diguanylate cyclase GGDEF family protein [Herbaspirillum
           seropedicae SmR1]
 gi|300072852|gb|ADJ62251.1| diguanylate cyclase GGDEF family protein [Herbaspirillum
           seropedicae SmR1]
          Length = 369

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 66/237 (27%), Positives = 108/237 (45%), Gaps = 19/237 (8%)

Query: 38  FIATVI--FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           F+A  I   +A +    I     Y  + +  E  SL  ++ ++ L +   +    ++L  
Sbjct: 135 FLADAINLMLAKLHRHTIHNHALY--KELEQEKQSLSALNRSLELRIAERT----RDLAQ 188

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
           +  ++  LS  D L+G+ N  +F  +L         +   L + F D+D+FK  ND++GH
Sbjct: 189 ANEQLRSLSLTDGLTGIANRRSFDETLEQEWRRSMRHGTPLMLAFIDVDWFKPYNDHYGH 248

Query: 149 PVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
             GD V+  ++  L          V R GGEEFA  A  +  Q  A +   +   +    
Sbjct: 249 LAGDAVLRQVAQTLRQSIARVGDTVARYGGEEFAIIAADTDGQAGADMLRRMCDAVHALA 308

Query: 208 INISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           I  +      ITISAG+A     +P   +  ++  AD ALY AK  GRNRVV  +++
Sbjct: 309 IAHAGSAMGRITISAGVASCNPGQPGAGLDGLLQAADAALYRAKMEGRNRVVLATEL 365


>gi|316934069|ref|YP_004109051.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
 gi|315601783|gb|ADU44318.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
          Length = 411

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 66/256 (25%), Positives = 115/256 (44%), Gaps = 17/256 (6%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           L+      +  +S           +     +   + +A+  L+    +   G  ++++  
Sbjct: 131 LTAAQLSAERRKSLQRRWPTALVPLLHGAVLMLPMVLAD--LWPTPNSGSAGNVWVMLFA 188

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121
           + LV+ +I       ++   ++ E  +S ++ +  + +D L+G+LN   F       I  
Sbjct: 189 VELVLYAIGTV----FVIFMLVSERAVSMHKAA--ASLDPLTGILNRRGFSEACARMIER 242

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                  +S + FDID+FK +ND FGHP GD+V+   +  +          GR+GGEEFA
Sbjct: 243 EAEAGRPVSALIFDIDHFKSVNDRFGHPAGDEVLKLFAAIVSNSLRISDLCGRIGGEEFA 302

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
           A        EA   A  +R+  +N  I +   P +  T+S G+A       +  ++  AD
Sbjct: 303 ALLP-CPIDEAVTAAERVREAFQNCGIEVDDAP-VATTVSIGVAGGPAGVVLDVLLAAAD 360

Query: 242 QALYVAKKSGRNRVVC 257
            ALY AK+ GRNRVV 
Sbjct: 361 TALYQAKRGGRNRVVA 376


>gi|269959455|ref|ZP_06173838.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835892|gb|EEZ89968.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 836

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 90/189 (47%), Gaps = 11/189 (5%)

Query: 81  LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           L+ YI     +        ++ +++  D L+ L N +  IS L  +           + +
Sbjct: 391 LINYICVFEDISVRKAHEEKLQRMAFYDPLTNLPNRTHLISLLEQHIENGQKHQHAFATL 450

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQE 191
           F DID+FK IND+ GH  GD+++  L+++L  V      V R+GG+EF        S+ +
Sbjct: 451 FLDIDHFKHINDSMGHFCGDQLLTKLAERLQDVLHLRAHVARIGGDEFVIILPNIESDSQ 510

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
                 D+  +  N    +S   S+ I+ S G+A      +   T++  AD A+Y+AKK+
Sbjct: 511 LIDTIEDILCLF-NRPFEVSKNESLRISTSVGVARYPQDGQDSETLLKNADTAMYLAKKN 569

Query: 251 GRNRVVCFS 259
           GRN    +S
Sbjct: 570 GRNGYAFYS 578


>gi|239787449|emb|CAX83921.1| putative response regulator receiver [uncultured bacterium]
          Length = 584

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 11/184 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           ++E       + + +  D L+GL N   F   L          +   +++F D+D FK +
Sbjct: 132 IRERRHLEELLREQAEFDALTGLPNRKLFHDRLEQAILMGVRNHRVFALLFVDLDRFKWV 191

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRK 201
           ND  GH  GD ++  +S +L  V      V RLGG+EF    +    E  A ++A  + +
Sbjct: 192 NDTLGHDAGDALLIEMSRRLKSVVRKSDTVARLGGDEFTVILVDILHESMAELVARKILE 251

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +   Q     G  + I+ S GIA      +    ++  AD A+Y AK+SGRN    FS 
Sbjct: 252 QL--VQPVTLKGQEVAISGSVGIAIYPVDGDSAVHLVKHADVAMYQAKESGRNAYRFFSS 309

Query: 261 IENN 264
             N 
Sbjct: 310 ALNE 313


>gi|170741157|ref|YP_001769812.1| diguanylate cyclase [Methylobacterium sp. 4-46]
 gi|168195431|gb|ACA17378.1| diguanylate cyclase [Methylobacterium sp. 4-46]
          Length = 386

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 67/236 (28%), Positives = 97/236 (41%), Gaps = 14/236 (5%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL 81
           +S       F  +  IF+A++  +A   +    +    G +  LV + S   +     L 
Sbjct: 147 WSSAVVAAGFGTYLVIFLASMALLA---VEPAAMAANRGADLSLVIDQSCSALVYLGFLA 203

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQ 141
           +     S+         R++ L+  D L+GL N               +I+  DID+FK 
Sbjct: 204 MAGERASL---------RLAHLAGTDPLTGLANRRGLSQLAHGRARPAAILLADIDHFKA 254

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH  GD V+   + +L           R GGEEF     G+    A  LA  +R 
Sbjct: 255 INDGHGHEGGDAVLVEFARRLRGSLRARDIAARWGGEEFLVVLHGADPAMAEALAERVRA 314

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
             E     +   P I +T+S G+A     E  I   + RAD ALY AK  GRNRV 
Sbjct: 315 ATEAHPFRVGQDP-IRVTVSIGVAILREDEHGIEPALQRADAALYAAKSDGRNRVR 369


>gi|257483066|ref|ZP_05637107.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|331011700|gb|EGH91756.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 420

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 119/285 (41%), Gaps = 36/285 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL------FYIG 54
           + +S    L +WL  +    +     +M    + +++F+ +   +   +L          
Sbjct: 129 LEQSYPVELQLWLA-DIRWPALHGA-WMSLIQLSYAMFLVSFGVLIWQYLEKPRPLHAAQ 186

Query: 55  LTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           +    GL + L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL 
Sbjct: 187 IVGLLGLFWALPKTFILPFTLNILCSQVMLMIAAAVAHEAY-------QMAFRDELTGLP 239

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A    +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        
Sbjct: 240 GRRALNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAY 299

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------------------- 214
           R GGEEFA      +  E       +R+ I N +I + +                     
Sbjct: 300 RYGGEEFAIVFAAKTIDECMPHLEAIRETIANYEIQLRNKDSRPQDDQQGRQRRGGAQAG 359

Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S+ +T+S G+AER         ++  ADQALY AK +GRN VV +
Sbjct: 360 SVSVTVSIGVAERQPEHRTPEEVLKSADQALYAAKGAGRNCVVAY 404


>gi|161502892|ref|YP_001570004.1| hypothetical protein SARI_00950 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864239|gb|ABX20862.1| hypothetical protein SARI_00950 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 570

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 54/198 (27%), Positives = 99/198 (50%), Gaps = 10/198 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+    T  LL+ + +   +++ +F+  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWGLFTAMLLISWGVIRHMVRNMFVLQSSLQWQAWHDPLTRLYNRGALFEKASRLAQ 421

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               + +  S++  D+DYFK +ND FGH  GD+V++  +  +     +    GR+GGEEF
Sbjct: 422 RYREFRKPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRSHDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                 +++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 482 CIVLPDATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVV 256
            AD+ LY AK+SGRNR+ 
Sbjct: 542 LADKRLYYAKQSGRNRIC 559


>gi|108763732|ref|YP_631891.1| GAF domain/GGDEF domain-containing protein [Myxococcus xanthus DK
           1622]
 gi|108467612|gb|ABF92797.1| GAF domain/GGDEF domain protein [Myxococcus xanthus DK 1622]
          Length = 710

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 11/188 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
            I ++    + ++L+     Y ++ +++  D L+GL NH  F +           Y  K 
Sbjct: 508 MIEVIAIQAAQAVLR--AQLYEQMERMATTDGLTGLYNHRTFQAKADEVLAQSRRYQRKF 565

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D+FK +ND +GHP GD+V+  ++  +  +      V R GGEEF      +  
Sbjct: 566 SLILTDVDHFKSVNDTYGHPTGDQVLKGVARIIKTMARDTDIVARYGGEEFVIIMPETDA 625

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAK 248
           + A  ++  +R+ ++        GP + IT+S GIA           +I  ADQ LY +K
Sbjct: 626 KGAFTISERIREAVKAEVFQTEMGP-LRITMSLGIATFPDSAMEKQQLIDLADQCLYHSK 684

Query: 249 KSGRNRVV 256
           ++GRN+ V
Sbjct: 685 RNGRNQSV 692


>gi|89954507|gb|ABD83655.1| response regulator protein-like [Rickettsia honei]
          Length = 450

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 60/191 (31%), Positives = 89/191 (46%), Gaps = 13/191 (6%)

Query: 79  SLLLGYISGSILKELFISYNR--ISQ---LSRIDCLSGLLNHSAFISSLGSYNEK----- 128
           S LL  I   + ++ +    R  + Q   L+  D L+GL N   F   L    EK     
Sbjct: 258 SELLARIRTQLRRKQYQDNLRNDLEQSVNLAVKDGLTGLFNRRYFDIHLKQIIEKANKES 317

Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             L ++  DID FK +ND +GH  GDKV+  +S  L         + R GGEEF      
Sbjct: 318 IKLYLLMCDIDNFKHVNDTYGHQAGDKVLTIVSRILKNTLRVTDLIARFGGEEFTILLTD 377

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALY 245
               +A   A  +R  I+    +I      +  T+S G+ +   +E I + I RAD+A+Y
Sbjct: 378 IDISKAIETAERVRVKIKYMNFHIEDQIEPLKTTVSIGVTKYKKEESIESFIERADKAMY 437

Query: 246 VAKKSGRNRVV 256
            AK +G+N+VV
Sbjct: 438 EAKTTGKNKVV 448


>gi|83644741|ref|YP_433176.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83632784|gb|ABC28751.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 912

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 99/219 (45%), Gaps = 12/219 (5%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           +T   G  ++++ N++ V+  +   L    I G  +  +  + N++  L+  D L+G  N
Sbjct: 422 MTAADGGSHVMLWNINRVV-DVDEELTQAIIIGQDISTIRETQNQLHFLAHYDVLTGAAN 480

Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
              F                 + ++  DID+FK+IND  GH  GD ++  +  +L     
Sbjct: 481 RRLFEDRCRQALKQASRRQHDVGLISLDIDHFKRINDTLGHDAGDALLQEICRRLASCVR 540

Query: 168 TPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
               + RLGG+EFA      +  ++  ++  +L + I    +++  G  + IT S G+  
Sbjct: 541 EEDTIARLGGDEFAILLNRVNGAEDCDLVGRNLLEAI-TRPVDLP-GQQLVITTSIGVTV 598

Query: 227 RC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
                   S ++  AD A+Y AKK+GRN +  +    N+
Sbjct: 599 SPRDGVEYSVLLKNADMAMYRAKKAGRNNIQMYQKEMND 637


>gi|71736866|ref|YP_272801.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71557419|gb|AAZ36630.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 712

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 95/197 (48%), Gaps = 14/197 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           ++++  +  S++++L   Y ++ + +  D L+GLLN      ++          ++ L +
Sbjct: 254 AMVMTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVEGMLLRKEQTDKYLVV 310

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQ 190
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF     G    +
Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           +AA +A  L + +   +     G  I +  S GIA        +  ++  AD A+Y AK+
Sbjct: 371 QAAKIAEKLIERVSGRRQ--VDGIDITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKR 428

Query: 250 SGRNRVVCFSDIENNTC 266
           +GR +   +    N   
Sbjct: 429 AGRQQYRFYDQNMNGRA 445


>gi|320327441|gb|EFW83454.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 305

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 10/225 (4%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
              + +    L P   L   + +  + + + +   + +G++S  +  +L+   N + ++S
Sbjct: 72  ALGVLISLALLNPAVNLHGNMAQIYACLPVLVIYPIFIGWMSHQVTLKLWEHRNILRKIS 131

Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           R D L+GLLNH A+   L        + +++  I   DID+FK IND +GH +GD V+  
Sbjct: 132 RTDSLTGLLNHGAWKDLLDLEYVKSQNQHQQCVIALIDIDHFKVINDTYGHLMGDTVLQN 191

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +S+ L+        +GR GG+EF      +   +A  +    R  I+    ++     + 
Sbjct: 192 ISEALMENLRDSDLIGRCGGDEFCVILPDTHLFQAREILERTRLAIDEMTYSLQ--RDLK 249

Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +++S GIA    +    S+ ++ AD+ALY+AK +GRN V    D+
Sbjct: 250 VSLSIGIAAYSPELPDASSWLHEADKALYLAKSTGRNCVASAQDM 294


>gi|313202102|ref|YP_004040760.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. MP688]
 gi|312441418|gb|ADQ85524.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. MP688]
          Length = 751

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 11/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + E     N+++ L+  D L+GL N       L           E ++++F D+D+FK 
Sbjct: 307 DVSEARNMANKMTYLAEHDYLTGLPNRLLLNDRLNQALTIARRDQEFIALMFLDLDHFKN 366

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           IND+ GH VGD+++  ++ +L         + R GG+EF       ++    A +A  L 
Sbjct: 367 INDSLGHEVGDQLLKMVARRLESCLRASDTISRQGGDEFMILLPELTNYFSPAEVAEKL- 425

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTII-YRADQALYVAKKSGRNRVVCFS 259
            +   +         I ++ S GIA          ++   AD A+Y AK  GRN    F+
Sbjct: 426 -LAAATVPYEIGAHEITVSASIGIAVFPDDGENGELLTKNADAAMYHAKSLGRNNYQFFT 484

Query: 260 DIENN 264
              N 
Sbjct: 485 RAMNE 489


>gi|300867885|ref|ZP_07112526.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
 gi|300334121|emb|CBN57702.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
          Length = 776

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 90/191 (47%), Gaps = 12/191 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128
           I+I +++G   G  L+   +    I   +  D L+GL N +         + +       
Sbjct: 589 ISILMVIGESIGGALQRQKM-EETIRHEALHDRLTGLPNRTLLGEKLNLALQNAHRRGSL 647

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            +++F D+D+FK +ND  GH +GD+++  +  +L         + R GG+EF       S
Sbjct: 648 FALMFLDLDHFKIVNDTLGHAIGDRLLQAVVKRLSSCLREGDTIARWGGDEFIILLPNIS 707

Query: 189 -EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYV 246
             ++AA +A  + ++++  + ++  G  + I  S GIA      +    ++ +AD ALY 
Sbjct: 708 RAKDAAAIAQRILEVLQG-EFDL-EGNKVAIGSSIGIAIYPEDGDDSDILMKKADGALYR 765

Query: 247 AKKSGRNRVVC 257
           AK+ GRN    
Sbjct: 766 AKEEGRNNFRF 776


>gi|258514837|ref|YP_003191059.1| response regulator receiver modulated diguanylate cyclase
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778542|gb|ACV62436.1| response regulator receiver modulated diguanylate cyclase
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 314

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 8/172 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           +EL     ++ Q++  D L+G+ N    I  +     +        S++  DID FK IN
Sbjct: 139 EELQQLLQKVEQIAITDFLTGITNRRFAIDRMNEELSRINRGEDGFSLLMIDIDNFKDIN 198

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GD ++  + + +  V      + R GGEEF      +   +A I+A  +   +
Sbjct: 199 DSHGHECGDYILKDVVNLIKSVLRNYDMMARWGGEEFLVMLPSTEINDAKIVAEKIISNV 258

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +QI    G S H+TI+AG+A+    + + +II RAD+A+Y  KKSG+N V
Sbjct: 259 R-TQIFTYKGNSFHVTITAGVAQHQAGDDLDSIIKRADEAMYHGKKSGKNCV 309


>gi|254515524|ref|ZP_05127584.1| sensory box/ggdef domain/eal domain protein [gamma proteobacterium
           NOR5-3]
 gi|219675246|gb|EED31612.1| sensory box/ggdef domain/eal domain protein [gamma proteobacterium
           NOR5-3]
          Length = 654

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 108/252 (42%), Gaps = 22/252 (8%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
             + F A+ +++A   L ++      G     V    +V+  I +      ++ +++  L
Sbjct: 142 LSAFFEASAVYLATSLLPFMVRLIGEGSPETNVMAFMVVLYLIMMMAFARRVNLTVIAGL 201

Query: 94  FISYNR------ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
            ++Y R      I + +  D L+GL N       LG           + +++F D+D+FK
Sbjct: 202 EMTYLRSQAEDTIERQALFDDLTGLPNRRLLQDRLGQALARAKRNETQAALLFLDLDFFK 261

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS------EQEAAI 194
           ++ND+ GH  GD+++  +  +L           RLGG+EF A                  
Sbjct: 262 RVNDSLGHSAGDELLVEVGRRLSAFLRDADTAARLGGDEFVALLTDIEGGTEHVVSVVRR 321

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253
               LR+ IE + I+I  G  IHIT+S G++        +  ++  AD A+Y AK  GRN
Sbjct: 322 RGEALRRAIE-APIDI-QGNEIHITVSIGVSLLPDDTNDVDDLLKHADTAMYRAKDDGRN 379

Query: 254 RVVCFSDIENNT 265
            +  F      +
Sbjct: 380 TLRFFVPEMQES 391


>gi|148548848|ref|YP_001268950.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas putida
           F1]
 gi|148512906|gb|ABQ79766.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida F1]
          Length = 796

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 14/211 (6%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           Y    P  GL ++  E    V      +L  GY++   + +L      +  LS  D L+G
Sbjct: 588 YRVCLPRAGLRWVRGEATPEVGEQ-GCTLWHGYLT--DISDLKGVEEELRALSVTDSLTG 644

Query: 112 LLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           + N   F   L             L+++  DID+FK+IND FGH VGD+V+  L  ++  
Sbjct: 645 IHNRRYFQERLKIELERAQRDGLPLAVIMLDIDHFKRINDRFGHAVGDRVLRSLCQRIAQ 704

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                    RLGGEEF     GS   +A +LA +L + + N  +         +T S G+
Sbjct: 705 RLRRTDVFCRLGGEEFMVLCPGSDADQARLLALELWQGVRNVPVEGVG----QVTASFGV 760

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A     E    ++ RAD  +Y AK++GR+RV
Sbjct: 761 AGWRSGEGADALLLRADAGVYAAKQAGRDRV 791


>gi|300310189|ref|YP_003774281.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gi|300072974|gb|ADJ62373.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 706

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 89/197 (45%), Gaps = 12/197 (6%)

Query: 80  LLLGYISGSILKELF-ISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           ++ G     +LK +   + +++   +  D L+GL N +     +           +  ++
Sbjct: 237 VISGVQRNQVLKRIVGRTNDKLLHFATHDVLTGLPNRALLADRIQHAVEVARRNGKTFAV 296

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQ 190
           +F D+D FK IND+ GH VGD ++  ++ ++         V R+GG+EF       SS  
Sbjct: 297 LFMDLDGFKAINDSLGHAVGDGLLVAVAQRIRQCLRGEDMVARIGGDEFVVVVGNLSSPD 356

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
               L+ ++   +   Q       ++ +T S GIA   +  + +  ++  AD A+Y AK+
Sbjct: 357 VVEQLSENILAALR--QDFQIDDATLRVTSSIGIAVYPNSGDSVDALMKNADAAMYEAKQ 414

Query: 250 SGRNRVVCFSDIENNTC 266
           SGRN    F    + + 
Sbjct: 415 SGRNTYRFFEPAMHASA 431


>gi|284042169|ref|YP_003392509.1| diguanylate cyclase [Conexibacter woesei DSM 14684]
 gi|283946390|gb|ADB49134.1| diguanylate cyclase [Conexibacter woesei DSM 14684]
          Length = 650

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 11/190 (5%)

Query: 81  LLGYISGS--ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSI 131
           LLG ++    I  E    ++++ + +  D L+GL NH  F         +   + + L +
Sbjct: 451 LLGSLAAQTGISLENVELHDQVKRQAVTDELTGLFNHRRFQEVITIEVAAAQRFGQPLGL 510

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID FKQ+ND +GH  GD V+  ++  L+          R GGEE A A   +    
Sbjct: 511 LMVDIDNFKQVNDTYGHQQGDVVLREVARILLDSSREIDEPARYGGEEMAVALPQTDLDG 570

Query: 192 AAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           A  +A  +R  +E   +    G   +H+T+S G+A          ++  AD ALY AK++
Sbjct: 571 AFTIAERVRTAVEELAVPRLDGDGLLHVTVSCGVAASASAGK-DQLVAAADVALYTAKRT 629

Query: 251 GRNRVVCFSD 260
           G+N+ V  +D
Sbjct: 630 GKNKTVRATD 639


>gi|254492493|ref|ZP_05105665.1| GGDEF domain protein [Methylophaga thiooxidans DMS010]
 gi|224462385|gb|EEF78662.1| GGDEF domain protein [Methylophaga thiooxydans DMS010]
          Length = 713

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
              + + S  D L+GL N   F  +L             LS++  DID+FK+ ND +GH 
Sbjct: 534 REDLQRYSFEDSLTGLRNRRFFDDALSRDIQLAEREQTALSLLICDIDHFKRFNDEYGHE 593

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  ++ +L   F       RLGGEEF      +S  +A + A  L + I  + I+
Sbjct: 594 AGDVALQSVAAKLKQQFRQSDIPCRLGGEEFVVLMREASLDDARVKAEKLLEAIAENHID 653

Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
             +     +T+SAG+A     E     ++ +AD+ALY AK++GRN VV F 
Sbjct: 654 YDNEKLGPLTVSAGVASWRGDEPDAEALLRKADKALYKAKQTGRNCVVVFE 704


>gi|160898917|ref|YP_001564499.1| diguanylate cyclase [Delftia acidovorans SPH-1]
 gi|160364501|gb|ABX36114.1| diguanylate cyclase [Delftia acidovorans SPH-1]
          Length = 496

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 64/252 (25%), Positives = 116/252 (46%), Gaps = 27/252 (10%)

Query: 28  MIYFSIFFSIFIATVIFIANI------FLFYIGLTPFYGLEYILVENLSLVIISIT-ISL 80
           M+  ++ + +F+  ++ + +       F   +  +P   LE      L L ++SI  +++
Sbjct: 232 MLLCAMRYRLFVVALLNLVSCAIKLATFSHVLFSSPGTELETTFSFRLGLAMLSIGPLAV 291

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVF 133
               ++   +       +++      D L+GLL  ++F+         L    +  +++ 
Sbjct: 292 ACTLMAFKDM------LSKLRHAVNHDALTGLLARTSFLERAQRTLERLQRERQSGAMLM 345

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D+FK IND  GH  GD+V+  +S +L         +GRLGGEEFA    G+    A 
Sbjct: 346 LDLDHFKHINDRHGHAAGDRVLQEVSARLSQALRPHELIGRLGGEEFAVLLPGADCVTAR 405

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGI-----AERCHKEPISTIIYRADQALYVAK 248
            +A  L +     +I+++ G +I  T+S GI     A       +S ++  AD ALY AK
Sbjct: 406 AVAQRLCEATREIRIDMNDGAAICPTLSIGIGCTNMAYPPLG--LSALLRMADTALYQAK 463

Query: 249 KSGRNRVVCFSD 260
            SGR+R     +
Sbjct: 464 ASGRDRYFVAGE 475


>gi|46581471|ref|YP_012279.1| GAF domain/sensory box/EAL domain-containing protein [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450893|gb|AAS97539.1| GAF domain/sensory box/EAL domain protein [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311235123|gb|ADP87977.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfovibrio
           vulgaris RCH1]
          Length = 827

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 85/177 (48%), Gaps = 9/177 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDY 138
           S   + E       + + +  D L+G  N   F        +    ++  L+++  DID+
Sbjct: 630 SARDITERKNLEAALLREATTDPLTGGRNRRQFFVDANREFARALRHDSGLAVLMLDIDH 689

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND +GH  GD+V+   +   V         GRLGGEEFAA    +S +EA   A  
Sbjct: 690 FKNVNDLYGHQAGDEVLRAFAACCVEALRAYDVFGRLGGEEFAALLPAASPEEAMETAER 749

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           LRK +E   + +  G ++  T+S G+      +     ++ RAD+ALY AK  GRNR
Sbjct: 750 LRKRVERRSV-VYEGTALQCTVSVGVTSLAAADLGFDDMLRRADRALYAAKDHGRNR 805


>gi|193071313|ref|ZP_03052231.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           E110019]
 gi|192955355|gb|EDV85840.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           E110019]
          Length = 558

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 536 LADRRLYLAKQAGRNRVCA 554


>gi|114562712|ref|YP_750225.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114334005|gb|ABI71387.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 278

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 96/197 (48%), Gaps = 17/197 (8%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYN 126
           I + +   L   + S + ++      + Q +  D L+G+ N       L        SY+
Sbjct: 85  IFVFVVCSLSLKTTSDIMQMHA----LKQENITDSLTGIFNRRYLDRRLKEETQRAQSYS 140

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           + LSI   DID+FK IND +GH +GD V+  ++  + +       V R GGEEF      
Sbjct: 141 KPLSIFLIDIDHFKNINDKYGHQIGDLVLKNIAQNIKMSLRESDIVARYGGEEFIVILPL 200

Query: 187 SSEQEAAILANDLRKIIENSQINISSGP-----SIHITISAGIAERCHK-EPISTIIYRA 240
           +    +  LA  LR IIEN Q+ + S       SI +T+S G+A    + +    +I  A
Sbjct: 201 TQVSTSYTLAERLRTIIENIQLALPSESEIDILSIGVTVSVGVAGMTSECKDYQCLIKNA 260

Query: 241 DQALYVAKKSGRNRVVC 257
           D+ALY +K++GRN+V  
Sbjct: 261 DRALYQSKQNGRNQVRV 277


>gi|313680697|ref|YP_004058436.1| diguanylate cyclase [Oceanithermus profundus DSM 14977]
 gi|313153412|gb|ADR37263.1| diguanylate cyclase [Oceanithermus profundus DSM 14977]
          Length = 372

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 12/233 (5%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +  IAT I++  + L  +  TPF  L           ++   IS ++  +       +  
Sbjct: 139 AFRIATGIWVVALVLGLL-YTPFGELWRNKDAGAFNALLQFYISGIVYAMLLYAFSRIEE 197

Query: 96  SYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           SY     L+ +D L+ L N              +  +    S++  D+D FK++ND  GH
Sbjct: 198 SYAENRMLAYLDHLTQLPNRRYGEAVLVHLFRQMREHGGTFSVIMLDLDGFKKVNDRHGH 257

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+V+   +  +         V R GGEEF        E+ A  +A ++R+ +E S  
Sbjct: 258 DVGDRVLKRCALLIQRYLPRGARVIRWGGEEFLIVLPDLEERAALAVAEEVRRGLERSP- 316

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +   GP +    S G+A     + + T+I RADQA+Y+AK++G NRVV FS +
Sbjct: 317 HERVGPVL---ASLGVAGCRPGDTLDTLIQRADQAMYLAKQNGGNRVVAFSQL 366


>gi|186473822|ref|YP_001861164.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum
           STM815]
 gi|184196154|gb|ACC74118.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum
           STM815]
          Length = 637

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 12/203 (5%)

Query: 70  SLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125
           S +  +   +LL+  ++   +   L  +  R+  L+  D L+ L N  AF   L      
Sbjct: 165 SFIFGASACALLIARFVMTRMKSRLNDAERRLEYLALTDPLTDLPNRRAFFEELERRIAS 224

Query: 126 ----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                  L++V  D+D FK IND  GH  GD+++  ++  L         V R+GG+EFA
Sbjct: 225 PARSKAPLTLVLIDVDDFKTINDTLGHGAGDELLKLVAAALKETVRAGDIVSRIGGDEFA 284

Query: 182 AAA-LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYR 239
             A L     ++   A  +  ++  ++     G S+ +T S G +      + +  ++  
Sbjct: 285 VLASLDREPHQSQSTAAKI--VLALARPFTLQGRSVAVTASIGYSRFPDDADDVPALVSN 342

Query: 240 ADQALYVAKKSGRNRVVCFSDIE 262
           AD ALY AK +G+N  V F    
Sbjct: 343 ADIALYAAKNNGKNTAVAFEHHM 365


>gi|291612949|ref|YP_003523106.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291583061|gb|ADE10719.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 751

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 12/188 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           + S +  L     ++  ++  D L+G+ N       L             L++ + D+D 
Sbjct: 302 TFSDITLLKQHERQLEHIAHYDALTGIPNRVLLADRLQQALAHSKREGTILAVCYLDLDG 361

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK +ND  GH  GDKV+  ++ ++         V RLGG+EFA   LG  + +E +   N
Sbjct: 362 FKLVNDTMGHEAGDKVLIEVTQRIKKSIRGDDTVARLGGDEFAVLLLGLHAPEECSASLN 421

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            L + I  SQ          ++ S G++     +    T++  ADQA+Y AK+SG+NR  
Sbjct: 422 RLLEEI--SQPIEIKNRLFEVSASIGVSIYPGDDHDADTLLRHADQAMYTAKQSGKNRYY 479

Query: 257 CFSDIENN 264
            + D EN+
Sbjct: 480 LY-DTEND 486


>gi|217976613|ref|YP_002360760.1| response regulator receiver modulated diguanylate cyclase
           [Methylocella silvestris BL2]
 gi|217501989|gb|ACK49398.1| response regulator receiver modulated diguanylate cyclase
           [Methylocella silvestris BL2]
          Length = 469

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 14/189 (7%)

Query: 81  LLGYISGSILKELFISYNRIS-----QLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128
           L+  +   + ++ +    R       +++ ID L+GL N   F       +         
Sbjct: 264 LVARVRTQLRRKRYADNLREKVEASLEMAVIDALTGLHNRRFFDGVFPSLMEEAKRKARP 323

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS++ FDID+FK +ND  GH  GD+++  L+ ++  +        RL G+EF      + 
Sbjct: 324 LSVMMFDIDHFKSVNDAHGHEAGDRLLQGLAGRVKGLVRGSDMFCRLSGDEFVILMPDTR 383

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
               A +A  +R  +  +   I    S+  TIS G+AE  H  P   ++  AD+ALY +K
Sbjct: 384 VDIGAKVAERVRAGVAGAAFPIGKAHSLSTTISIGLAESAHAGP--DLLREADRALYRSK 441

Query: 249 KSGRNRVVC 257
           ++GRNRV  
Sbjct: 442 EAGRNRVFV 450


>gi|28869513|ref|NP_792132.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28852755|gb|AAO55827.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 323

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 88/175 (50%), Gaps = 10/175 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +L      +  LS  D L+G  N   F   +         +   LSI+  DID+FK
Sbjct: 147 SDITDLKRVEEELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSIIMLDIDHFK 206

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +A  LA  LR
Sbjct: 207 RINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVVCPGTRGGQAYQLALSLR 266

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + + N  I    G    +T S GIA     E I T++ RAD  +Y AK++GR+RV
Sbjct: 267 EGLRNQVI---EGVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQAGRDRV 318


>gi|95929052|ref|ZP_01311797.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95134953|gb|EAT16607.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 825

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 7/179 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           + L  + + +S+L+R D L+GL N   F+     Y         ++  +  D+D+FKQ+N
Sbjct: 643 RALRKANSNLSRLARTDPLTGLHNRRYFMEFAQQYISLAHRNETEMQFLSLDLDHFKQVN 702

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGD ++   +  LV +  +   + R GGEEF      ++++ A + A  + + I
Sbjct: 703 DRYGHQVGDDILKLFATTLVPLLRSTDLLARTGGEEFIICLQNTTQEGANVFARKIIETI 762

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            + +   +   ++  T+S GIA     E +  ++ R+D ALY AKK+GR+R       E
Sbjct: 763 RDLRYRTAEDETVTFTVSIGIASLFRGENLEDVLCRSDHALYRAKKNGRDRFTLADPPE 821


>gi|330819964|ref|YP_004348826.1| Diguanylate cyclase [Burkholderia gladioli BSR3]
 gi|327371959|gb|AEA63314.1| Diguanylate cyclase [Burkholderia gladioli BSR3]
          Length = 505

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 62/192 (32%), Positives = 96/192 (50%), Gaps = 10/192 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136
           ++    L++      +++ LSR D L+GLLN  A  ++L     +       +S++F D 
Sbjct: 312 WLLAFALRDNLRKQQKLTDLSRTDALTGLLNRRALDAALEDEWYRIQRGNSCMSVLFIDA 371

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAIL 195
           D+FKQ ND  GH  GD  + FL++ +            R GGEEF A    + E  AA +
Sbjct: 372 DHFKQYNDVHGHARGDTALRFLAECIRKHVRRHGDIAARYGGEEFVAVLANTDENGAARV 431

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRN 253
           A  +R+ IE ++++    P    T+S G A      P  +  + +RAD ALY AK+ GRN
Sbjct: 432 AQAIRQEIETNRLDEFPEPVPAFTVSIGCATGRKGRPASVDALAHRADLALYEAKRRGRN 491

Query: 254 RVVCFSDIENNT 265
           RV   S  ++ T
Sbjct: 492 RVCVASMEDDET 503


>gi|325108730|ref|YP_004269798.1| diguanylate cyclase with GAF sensor [Planctomyces brasiliensis DSM
           5305]
 gi|324968998|gb|ADY59776.1| diguanylate cyclase with GAF sensor [Planctomyces brasiliensis DSM
           5305]
          Length = 584

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 94/186 (50%), Gaps = 16/186 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
           ++  ++++ L  +  +  + +  D L+ L N  +F   +            + S+  FD+
Sbjct: 384 FLGETLVRALDRAETQ--RRASTDGLTNLANRRSFDKRIQKEVEQARHTGTECSLCLFDL 441

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQL---VVVFGTPM--FVGRLGGEEFAAAALGSSEQE 191
           D+FK IND +GH  GD+V+   +  L              V R GGEE A    G ++Q 
Sbjct: 442 DHFKSINDTYGHLAGDEVLKQFARLLITQSQHVRGTDVPLVARYGGEEMAILLPGVNQQG 501

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
           A  ++  +R+ IE + + +  G SI +++S GIA    H + + ++I  AD+ALY AK++
Sbjct: 502 AMRISEAIRRSIERTSV-LYQGRSIRVSVSVGIACFPRHAQTVESLIRAADKALYAAKRA 560

Query: 251 GRNRVV 256
           GRN V 
Sbjct: 561 GRNTVR 566


>gi|297582767|ref|YP_003698547.1| diguanylate cyclase [Bacillus selenitireducens MLS10]
 gi|297141224|gb|ADH97981.1| diguanylate cyclase [Bacillus selenitireducens MLS10]
          Length = 520

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 93/206 (45%), Gaps = 17/206 (8%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN 126
            N   + ++    +L  + +      L+    +I  L+  D L+G +N +AFI+      
Sbjct: 323 RNREFIYVNGFFGILTVFFTT-----LYYERRKIRHLAHTDQLTGQMNRNAFINHANRLI 377

Query: 127 E-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                    LS+   DID+FK+IND +GH  GD+ +  ++  +           R GGEE
Sbjct: 378 RLSVKNKTPLSVALLDIDHFKKINDTYGHKTGDQALQEIATSIREALDESDLFARWGGEE 437

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIY 238
           F      + E+EA I  + +R  I              ITIS GI   R  ++ +  +I 
Sbjct: 438 FVIMMPETREKEAEIRLDAIRATIAGKAFT----QVGTITISIGITGARPDRDSLEQLIA 493

Query: 239 RADQALYVAKKSGRNRVVCFSDIENN 264
            AD+ALY AK  GRNRVV +    +N
Sbjct: 494 SADEALYEAKNKGRNRVVLYRSPRSN 519


>gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [Janthinobacterium sp. Marseille]
 gi|151282177|gb|ABR90587.1| Hypothetical protein mma_3133 [Janthinobacterium sp. Marseille]
          Length = 352

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 13/181 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           E  I+  R+  +   D L+G+ N       L         +   LS ++ D+D+FK++ND
Sbjct: 172 ENVINNERLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGYALSGMYIDLDHFKKVND 231

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           NFGH  GD+V+  +++++         +GR GGEEF    + +    A ++A  +R  + 
Sbjct: 232 NFGHQGGDEVLCEVANRIKAELRLSDALGRFGGEEFVVLLIDAPLDAALVVAERIRASVS 291

Query: 205 NSQINISSGPSIHITISAGIAERCHKEP------ISTIIYRADQALYVAKKSGRNRVVCF 258
              I +SSG  +  T+S G+A     +          ++ +AD ALY AKK GRN+V+  
Sbjct: 292 ERPIVLSSGEELRATVSIGVASLNTADRQDSAAVAQQLLAKADLALYQAKKEGRNKVISA 351

Query: 259 S 259
           S
Sbjct: 352 S 352


>gi|82703078|ref|YP_412644.1| diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis
           ATCC 25196]
 gi|82411143|gb|ABB75252.1| diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis
           ATCC 25196]
          Length = 975

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 89/184 (48%), Gaps = 9/184 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
           G  + E   +  R++ L+  D L+ L N   F   L         Y    +++FFD+D F
Sbjct: 531 GLDMTEHKRAEGRLAWLADHDPLTDLFNRRRFQEELEQMLNLAARYGYSGALLFFDLDQF 590

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND  GH  GD ++  ++  L+    +   +GRLGG+EFA     ++ + A  +A + 
Sbjct: 591 KYINDTSGHQAGDALLKMVARLLLGNIRSVDILGRLGGDEFAVILPQTTAEGAIEVAKNT 650

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +   +I I +G +   + S GIA    H   +  ++  AD A+Y AK++GR     F
Sbjct: 651 LASLNQGKITI-NGRTHKASASVGIALFPEHGSNVHDLLAAADLAMYQAKEAGRGGWHLF 709

Query: 259 SDIE 262
           SD E
Sbjct: 710 SDEE 713


>gi|148259506|ref|YP_001233633.1| diguanylate cyclase/phosphodiesterase [Acidiphilium cryptum JF-5]
 gi|146401187|gb|ABQ29714.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Acidiphilium cryptum JF-5]
          Length = 742

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 94/196 (47%), Gaps = 10/196 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSI 131
           T++  L  +    L+ L  S  RI  L+  D L+GL N + F  S  +         +++
Sbjct: 282 TVAGFLAVVRSRSLR-LQASEVRIHHLAFHDPLTGLPNRTFFNESADAALAALSGTSIAL 340

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQ 190
           +F D+D FKQ+ND  GHP GD +I     +L  +      V R+GG+EF     G +  +
Sbjct: 341 LFLDLDRFKQVNDTLGHPAGDTLIREFGARLRALVREEDMVARVGGDEFTVMLAGVAGRE 400

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKK 249
           +   L   + + +  +  ++ +G  + + +S G+A    H      ++ +AD ALY AK 
Sbjct: 401 DVEKLCARIVESVR-TPFDL-NGNRVFVGLSIGVALAPDHGTDRIDLLRKADIALYSAKS 458

Query: 250 SGRNRVVCFSDIENNT 265
           +GR R   F  + ++ 
Sbjct: 459 TGRGRFAFFDPVMDDA 474


>gi|116694068|ref|YP_728279.1| signal transduction protein [Ralstonia eutropha H16]
 gi|113528567|emb|CAJ94914.1| predicted signal transduction protein containinga membrane domain,
           an EAL and a GGDEF domain [Ralstonia eutropha H16]
          Length = 1085

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 91/186 (48%), Gaps = 13/186 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
           G  L E       I  L+  D L+GL N +              S+ E+++++  D+D+F
Sbjct: 626 GYDLTERLRVDEYIRHLALHDPLTGLPNRAELSERAQALLLYARSHGERVALLLLDLDHF 685

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K IND+ GHPVGD V+  ++D+L         V R+GG+EF     G   + EA ++A  
Sbjct: 686 KHINDSLGHPVGDDVLRTMADRLKGAVRQGDLVARMGGDEFGVVLGGLRHDSEAELIAAK 745

Query: 199 LRKII-ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           ++  + E  Q   + G  + +T S G+A      + ++ ++  AD A+Y AK  GR ++ 
Sbjct: 746 IQARVNEELQ---AGGQRLRVTPSIGMAIYPDDGDSLTELLKAADSAVYAAKHDGRAQLC 802

Query: 257 CFSDIE 262
            F+   
Sbjct: 803 RFASAM 808


>gi|58698225|ref|ZP_00373145.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630041|ref|YP_002726832.1| response regulator PleD [Wolbachia sp. wRi]
 gi|58535252|gb|EAL59331.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225592022|gb|ACN95041.1| response regulator PleD [Wolbachia sp. wRi]
          Length = 458

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 59/191 (30%), Positives = 95/191 (49%), Gaps = 15/191 (7%)

Query: 81  LLGYISGSILKELFISYNRI-----SQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           L+  ++  + ++ +    R+     +++S  D L+   N   F + L          + +
Sbjct: 266 LIARVNSQVKRKRYQDALRMNLFNNAEMSIKDPLTNCYNRRYFDAHLRNIVKDSVEKDRR 325

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS++  DIDYFK +NDNFGH  GD+++  +  ++         + R GGEEF      + 
Sbjct: 326 LSLMILDIDYFKMVNDNFGHSAGDELLKQIQRRISENIRVTDLLARFGGEEFVVVMPDTD 385

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHK--EPISTIIYRADQALY 245
             +A  +A  +RKII      ++   + H +T+S GIAE      + I   I RAD+ LY
Sbjct: 386 TSDAYTIAERIRKIIAKKPFILADKNTTHNVTVSIGIAEMQGSDLDNIKEFIVRADKYLY 445

Query: 246 VAKKSGRNRVV 256
            AK SGRNRVV
Sbjct: 446 KAKNSGRNRVV 456


>gi|331668646|ref|ZP_08369494.1| cellulose synthesis regulatory protein [Escherichia coli TA271]
 gi|331063840|gb|EGI35751.1| cellulose synthesis regulatory protein [Escherichia coli TA271]
          Length = 558

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LYQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 536 LADRRLYLAKQAGRNRVCA 554


>gi|294631547|ref|ZP_06710107.1| sensory box/GGDEF domain/EAL domain-containing protein
           [Streptomyces sp. e14]
 gi|292834880|gb|EFF93229.1| sensory box/GGDEF domain/EAL domain-containing protein
           [Streptomyces sp. e14]
          Length = 744

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 16/194 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
            +   + E      ++   +  D L+ L N + F   +          +   +++F D+D
Sbjct: 231 FNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTKRVQQALSGRRSTDRGTAVLFIDLD 290

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--- 194
            FK +ND  GH  GD+++   + +L           RLGG+EFAA  +G   ++ A    
Sbjct: 291 GFKGVNDTIGHQAGDELLVQAARRLQEAVRHGDTAARLGGDEFAALIVGDGGRDHAAREG 350

Query: 195 ----LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
               LA+ LR  +  SQ  +  G  + +  S G+A          ++  AD A+Y AK +
Sbjct: 351 HILELADRLRATL--SQPYLIDGNDVRVAASIGVAFAEPGLGAGELLRNADLAMYRAKAA 408

Query: 251 GRNRVVCFSDIENN 264
           G+ RV  +      
Sbjct: 409 GKGRVELYKPQMQQ 422


>gi|157273340|gb|ABV27239.1| two-component response regulator protein [Candidatus
           Chloracidobacterium thermophilum]
          Length = 750

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 9/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           +  +Y+     +  D L+GL NH+ F+  L       G     LS++  D+D FK  ND 
Sbjct: 549 MLRAYHSARHRAITDGLTGLFNHAYFLEKLTREAELAGRSGRPLSVIMLDVDRFKHFNDT 608

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  G++++  L+  +   F     + R GGEEF      + + +AA+LA  LR+ +  
Sbjct: 609 NGHETGNELLKDLARLMERCFRRSDLLARYGGEEFVVLLPNTPKSQAAVLAERLRRRVAE 668

Query: 206 SQI-NISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                  S P   +T+S G+ A          ++  AD+ALY AK++GRNRV  
Sbjct: 669 YPFVGRESQPGGCLTVSLGVAAMPTDTSDPKQLLELADRALYRAKQNGRNRVCV 722


>gi|66044376|ref|YP_234217.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63255083|gb|AAY36179.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 509

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 12/192 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIV 132
           L L ++    L+    + + ++ L+  D L+GL N                   + LS++
Sbjct: 312 LWLTWLLCRELRRRHRAEDALASLAATDGLTGLDNRRQLDEAMEIEWARAQRSGKPLSLL 371

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQE 191
             D+D+FK  N+  GH  GD+ +  ++  +      P   V R GGEEF      +    
Sbjct: 372 MIDVDHFKAFNERHGHQGGDEALRLIAQTISYCIRRPGDRVARYGGEEFVVVLPETDLPG 431

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKK 249
           A ++A  +RK  E+  +  ++     IT+S G+A       + +      AD+ALY AK 
Sbjct: 432 AMLIAEKIRKAAESLPLFRNAEH--PITVSIGVASEVVRQGDKLEAFFGVADKALYQAKD 489

Query: 250 SGRNRVVCFSDI 261
           +GRNRV   S +
Sbjct: 490 NGRNRVEYRSSV 501


>gi|113970559|ref|YP_734352.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|114047793|ref|YP_738343.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113885243|gb|ABI39295.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113889235|gb|ABI43286.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 312

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 14/182 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQIN 143
            + + L  + +   +L+  D L+ L N  AF            + LS + FDID+FK+IN
Sbjct: 129 QMEQALIEAKSTAERLAHTDELTQLYNRRAFFNLGRQIAQQAQQPLSFIMFDIDHFKRIN 188

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D++GH +GD  +  ++        +   + RLGGEEF      +  ++A  +A  +R   
Sbjct: 189 DHWGHAIGDAALIHIARLTQTKLSSSDILARLGGEEFGLILPNTHHEQAWQVAEAIRHGF 248

Query: 204 ENSQINISSGPSIHITISAGIAE---------RCHKEPISTIIYRADQALYVAKKSGRNR 254
           +   +++  G SI  T S GI+             +  + ++   ADQA+  AK++GRN+
Sbjct: 249 DTQPLHL-DGHSIRCTASFGISSIILPKINHLDEAQTLLESLFNNADQAMMQAKRAGRNQ 307

Query: 255 VV 256
           V 
Sbjct: 308 VC 309


>gi|283779436|ref|YP_003370191.1| response regulator receiver modulated diguanylate cyclase
           [Pirellula staleyi DSM 6068]
 gi|283437889|gb|ADB16331.1| response regulator receiver modulated diguanylate cyclase
           [Pirellula staleyi DSM 6068]
          Length = 569

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 75/194 (38%), Positives = 105/194 (54%), Gaps = 12/194 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           LL    + S + EL     R+S L+R D ++GLL    F   L         ++  LS V
Sbjct: 115 LLARLRAASRVLEL---EKRLSLLARTDPMTGLLTKKVFHEMLVKEWGRSTRHHFPLSCV 171

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            FD D+FK+IND +GHPVGD+VI  +   L         + R GGEEFA     ++E  A
Sbjct: 172 MFDCDFFKRINDTYGHPVGDEVIRRIGRTLSSNCRGSDVIARFGGEEFAVLLPETTESNA 231

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSG 251
           AI A  +RK++   +I +  G  + ITIS G+A+R         ++  ADQAL VAK+SG
Sbjct: 232 AIWAERIRKLVAADRIMV-DGKELAITISGGVAQRMVDNAQPDQLVDMADQALLVAKRSG 290

Query: 252 RNRVVCFSDIENNT 265
           R+R+V FS +  NT
Sbjct: 291 RDRIVTFSSMLGNT 304


>gi|170680876|ref|YP_001743290.1| diguanylate cyclase [Escherichia coli SMS-3-5]
 gi|170518594|gb|ACB16772.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           SMS-3-5]
          Length = 558

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 536 LADRRLYLAKQAGRNRVCA 554


>gi|119476529|ref|ZP_01616880.1| GGDEF domain protein [marine gamma proteobacterium HTCC2143]
 gi|119450393|gb|EAW31628.1| GGDEF domain protein [marine gamma proteobacterium HTCC2143]
          Length = 331

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 111/226 (49%), Gaps = 11/226 (4%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI---LKELFISY 97
           ++       + ++    F G  Y     L L+I  IT++ L      SI    K+   + 
Sbjct: 99  SISLSILCLILFLPPDVFGGANYETAFKLRLIIAFITVTFLAACYEYSIEQSYKDTLQAS 158

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPV 150
            +  QL+R D L+ L N    ++ +     ++S       I+  D+D+FK++ND +GH  
Sbjct: 159 EQFEQLARTDQLTKLCNRRGALTVIEQEQRRMSRNKQAMSIILCDVDHFKKVNDQYGHNT 218

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  L++    +      + R GGEEF      +S + A IL+  + +++++  I++
Sbjct: 219 GDAVLISLAETFTQLIRKQDTIARWGGEEFLFVLPETSAENAYILSQKIHQVLQDQLIDV 278

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             G  I +T+S G+ E    +    II +AD+ LY AK++GRN+ +
Sbjct: 279 -EGIKIAVTVSMGVTEMHGNQAFDEIINQADKHLYEAKRAGRNQTM 323


>gi|194430437|ref|ZP_03062920.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B171]
 gi|194411516|gb|EDX27855.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B171]
 gi|323158566|gb|EFZ44580.1| cellulose synthesis regulatory protein [Escherichia coli E128010]
          Length = 558

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 536 LADRRLYLAKQAGRNRVCA 554


>gi|302343713|ref|YP_003808242.1| diguanylate cyclase [Desulfarculus baarsii DSM 2075]
 gi|301640326|gb|ADK85648.1| diguanylate cyclase [Desulfarculus baarsii DSM 2075]
          Length = 361

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 7/206 (3%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           YGL   +++NLS ++   +++         + K L  + +R+++LS  D L+ L NH   
Sbjct: 152 YGLVAEMIDNLSRIMELKSLAEARSNDLDDLNKRLRDANHRLTELSITDGLTSLFNHRYT 211

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L             LSI+  D+D+FK++ND  GH  GD+ +   S  L         
Sbjct: 212 HQRLEEEIRRCQRSETPLSIIMADLDHFKRLNDRLGHLAGDEALRLFSGWLRECVRNTDL 271

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
           +GRLGGEEF    L     +A ++A  +R+  + +            T+S G+A+    +
Sbjct: 272 LGRLGGEEFVVVLLDCPLDQALLVAEKIRRTTQANSQAPPFEAIGGFTVSLGVAQWRPGQ 331

Query: 232 PISTIIYRADQALYVAKKSGRNRVVC 257
             S ++  AD+ALY AK+ GRN+V  
Sbjct: 332 EASQLLDAADKALYQAKERGRNKVRA 357


>gi|42520116|ref|NP_966031.1| response regulator PleD [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42409853|gb|AAS13965.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 460

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 15/191 (7%)

Query: 81  LLGYISGSILKELFISYNRI-----SQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           L+  ++  + ++ +    R+     +++S  D L+   N   F + L          + +
Sbjct: 266 LIARVNSQVKRKRYQDALRMNLFNNAEMSIKDPLTNCYNRRYFDAHLRNIVKDSVEKDRR 325

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS++  DIDYFK +ND+FGH  GD+++  +  ++         + R GGEEF      ++
Sbjct: 326 LSLMILDIDYFKIVNDSFGHSAGDELLKQIQKRISENIRVTDLLARFGGEEFVVVMPDTN 385

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHK--EPISTIIYRADQALY 245
             +A  +A  +RKII      ++   + H +T+S GIAE      + I   I RAD+ LY
Sbjct: 386 VSDAYTIAERIRKIIAKKPFILADKNTTHDVTVSIGIAEMQESDLDNIKEFIVRADKYLY 445

Query: 246 VAKKSGRNRVV 256
            AK SGRNRVV
Sbjct: 446 KAKNSGRNRVV 456


>gi|24111763|ref|NP_706273.1| diguanylate cyclase AdrA [Shigella flexneri 2a str. 301]
 gi|30061881|ref|NP_836052.1| diguanylate cyclase AdrA [Shigella flexneri 2a str. 2457T]
 gi|24050549|gb|AAN41980.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30040125|gb|AAP15858.1| hypothetical protein S0329 [Shigella flexneri 2a str. 2457T]
 gi|281599717|gb|ADA72701.1| MASE2 domain/diguanylate cyclase [Shigella flexneri 2002017]
 gi|313647000|gb|EFS11457.1| diguanylate cyclase domain protein [Shigella flexneri 2a str.
           2457T]
 gi|333008111|gb|EGK27587.1| diguanylate cyclase domain protein [Shigella flexneri K-218]
          Length = 371

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   L+ G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVVYPLMFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      +R+ +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVREGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|120553189|ref|YP_957540.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter aquaeolei VT8]
 gi|120323038|gb|ABM17353.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter aquaeolei VT8]
          Length = 890

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 11/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + +       +   +  D L+GL N +     L          + KL+++  D+D FK+
Sbjct: 449 DVTDRKRYEAALEYQANHDDLTGLPNRNLLRDRLEHAITKATREHTKLAVLLLDLDQFKR 508

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND  GH +GD +I  ++ ++         V RLGG+EF   +     E+ AA LA  L 
Sbjct: 509 VNDGLGHKIGDTLIQRVASRMSQCVRDSDTVARLGGDEFMILSTDIRDERAAATLAQKLL 568

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +     Q    +G  I  + S GIA      +    +   AD A+Y AK  GRN    +S
Sbjct: 569 RQFR--QKVAINGHEIIASASIGIAMFPKDGDNGDELFRNADTAMYRAKDVGRNGFQFYS 626

Query: 260 DIENN 264
              NN
Sbjct: 627 AEMNN 631


>gi|325277590|ref|ZP_08143176.1| GGDEF domain-containing protein [Pseudomonas sp. TJI-51]
 gi|324097271|gb|EGB95531.1| GGDEF domain-containing protein [Pseudomonas sp. TJI-51]
          Length = 577

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 105/219 (47%), Gaps = 14/219 (6%)

Query: 60  GLEY-ILVENLSLVIISITISLLLGYI---SGSILKELFISYNRISQLSRIDCLSGLLNH 115
           GL Y +L+  LS++ +++  S+L   +   +  + + L ++   ++QL+  D L+GL N 
Sbjct: 97  GLVYLVLITTLSVLAVALLTSVLDARLEVRTAELARSLTLANQELTQLALHDTLTGLPNR 156

Query: 116 SAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
           +     +     +        +++F D+D FK +ND FGH +GD ++  ++ +L     +
Sbjct: 157 TLLADRIEQAIARVAEQGGCFALMFIDLDGFKPVNDAFGHHIGDLLLKAVAARLRGHLHS 216

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
              + R+GG+EF          +A  +A  ++++   S+    +   + ++ S GI    
Sbjct: 217 QDTLARIGGDEFVLLVQLQEPDDAMDVA--VKQVNLVSRPFRVAEHDLQLSASLGIVLYP 274

Query: 229 -HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            + +    ++  AD A+Y AK +G+N    F    N+  
Sbjct: 275 GNGQDQHELLRNADAAMYHAKSAGKNGYRFFDVSMNSNA 313


>gi|218899205|ref|YP_002447616.1| putative sensory box/GGDEF family protein [Bacillus cereus G9842]
 gi|218545137|gb|ACK97531.1| putative sensory box/GGDEF family protein [Bacillus cereus G9842]
          Length = 430

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ +D L+ + N   F   L          +EK++I+ FDID FK +
Sbjct: 254 ITELDEIYQEQERLAMVDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTV 313

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 314 NDTYGHDFGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 373

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q    S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 374 IETKQFTGIS----KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 425


>gi|71736497|ref|YP_274299.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71557050|gb|AAZ36261.1| CHASE domain/sensory box-containing nucleotide cyclase, putative
           [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 796

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 88/175 (50%), Gaps = 10/175 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +L      +  LS  D L+G  N   F   +         +   LSI+  DID+FK
Sbjct: 620 SDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSIIMLDIDHFK 679

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +A  LA  LR
Sbjct: 680 RINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRGSQAYQLALSLR 739

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + + N  I    G    +T S GIA     E I T++ RAD  +Y AK++GR+RV
Sbjct: 740 EGLRNQVI---EGVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQAGRDRV 791


>gi|51893986|ref|YP_076677.1| hypothetical protein STH2848 [Symbiobacterium thermophilum IAM
           14863]
 gi|51857675|dbj|BAD41833.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 712

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 10/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145
                  + +L+  D L+GL N  AF + L  Y E       + +++F D+D  K +ND 
Sbjct: 257 RRRVQAALKRLASQDALTGLYNRRAFQAELERYLELARHHRVRGALLFMDLDLLKYVNDT 316

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD+V+  +++ +           R GG+EFA     +  +EA  +A  L + ++ 
Sbjct: 317 LGHQAGDQVLVRVAEIIQAHLRPIDIAARHGGDEFAILMPYTG-REAVSVAESLLRAVQQ 375

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +  +  G S+ +T S G+     H      ++ +AD A+Y AK+SGRN V  F 
Sbjct: 376 EEFRVK-GRSVTMTASIGVTFFPDHGLTAEALVAQADMAMYRAKESGRNAVAVFD 429


>gi|319943940|ref|ZP_08018220.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lautropia mirabilis ATCC 51599]
 gi|319742701|gb|EFV95108.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lautropia mirabilis ATCC 51599]
          Length = 989

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 59/260 (22%), Positives = 114/260 (43%), Gaps = 17/260 (6%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI 64
           L++   +WL  +    +     + +      +  +A V+    +    +  TP       
Sbjct: 473 LREGALLWLHRKDGNSAEFYARYQMERLGLKAALLAPVMDKGKVLSVLLFFTP------Q 526

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG- 123
             E  SLV+    + +L   +S  + ++   +  ++ + S+ D L+GL N       L  
Sbjct: 527 SFEGNSLVV--DLVGMLSRLLSQYMERQRLEA--QLRRQSQHDALTGLPNRKYLSERLEK 582

Query: 124 --SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              + + L++++ D+D +K IND  GH  GD+V+  ++ +     G      R+GG+EF 
Sbjct: 583 QLEHKQPLAVLYIDLDRYKAINDTLGHQAGDQVLVEMARRFKDTIGPGNIASRVGGDEFI 642

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIA-ERCHKEPISTIIYR 239
              L   + +A  + +  R+++  ++         H ++ S G++    H     T+I R
Sbjct: 643 LVLLN--QNDAKKVEHIARQVLAAAERPFILQERAHFLSASIGVSLSPQHGTDAGTLIKR 700

Query: 240 ADQALYVAKKSGRNRVVCFS 259
           AD A+Y  K  GRN V  FS
Sbjct: 701 ADAAMYTVKSEGRNDVRFFS 720


>gi|300313074|ref|YP_003777166.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1]
 gi|300075859|gb|ADJ65258.1| GGDEF domain containing protein [Herbaspirillum seropedicae SmR1]
          Length = 738

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 89/188 (47%), Gaps = 16/188 (8%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           L + ++    + E     +++ +L+  D L+ L N  AF   L          ++ L++ 
Sbjct: 547 LFIAFLH--DITERLAFRDQMRELALTDVLTSLPNRRAFSDRLPEGMMRARRAHQLLALF 604

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQE 191
           F D+D FK IND +GH  GD+++   + +L         V RL G+EF        S+Q+
Sbjct: 605 FMDLDGFKGINDRYGHEAGDELLVEFARRLQASVRDVDTVARLAGDEFVVILENLQSQQD 664

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVA 247
           A ++A  +   I   +    +  ++HI+ S G+A              ++  AD+A+Y A
Sbjct: 665 AIMVAEKILHAIR--EPFELTHSTVHISSSIGVAVYQPDLDGEIGPEELLSMADKAMYAA 722

Query: 248 KKSGRNRV 255
           K+ G+NR+
Sbjct: 723 KRLGKNRI 730


>gi|289650648|ref|ZP_06481991.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 420

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 119/285 (41%), Gaps = 36/285 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL------FYIG 54
           + +S    L +WL  +    +     +M    + +++F+ +   +   +L          
Sbjct: 129 LEQSYPVELQVWLA-DIRWPALHGA-WMSLIQLSYAMFLVSFGVLIWQYLEKPRPLHAAQ 186

Query: 55  LTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           +    GL + L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL 
Sbjct: 187 IVGLLGLFWALPKTFILPFTLNILCSQVMLMIAAAVAHEAY-------QMAFRDELTGLP 239

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A    +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        
Sbjct: 240 GRRALNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAY 299

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------------------- 214
           R GGEEFA      +  E       +R+ I N +I + +                     
Sbjct: 300 RYGGEEFAIVFAAKTIDECMPHLEAIRETIANYEIQLRNKDSRPQDDQQGRQRRGGAQAG 359

Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S+ +T+S G+AER         ++  ADQALY AK +GRN VV +
Sbjct: 360 SVSVTVSIGVAERQPEHRTPEEVLKSADQALYAAKGAGRNCVVAY 404


>gi|206601970|gb|EDZ38452.1| Diguanylate cyclase with PAS/PAC sensor [Leptospirillum sp. Group II
            '5-way CG']
          Length = 1029

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 95/225 (42%), Gaps = 26/225 (11%)

Query: 49   FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
            FL  I ++P    +  LV   SLV I             + +         +  L+  D 
Sbjct: 812  FLAEIRISPILDEDKALV---SLVAIE------------TDITRERRKEKELRLLAFHDP 856

Query: 109  LSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
            L+GL N +A              Y   L ++FFD+D FK++ND+ GH  GD+++A L+ +
Sbjct: 857  LTGLPNRAALEREFEGYLAVARRYRRVLVLLFFDLDGFKEVNDSLGHEAGDQLLAELAIR 916

Query: 162  LVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            +         + RLGG+EF      + +  E   LA  L ++I   Q        + I  
Sbjct: 917  VESELRGGDRLFRLGGDEFLVILNNAGTRTEVEQLARRLLEVI--HQPFDLRDQEVGIGA 974

Query: 221  SAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            S GIA           ++  AD A+Y AK  G+NR+  +   E +
Sbjct: 975  SIGIALYPENAASQQDLLRMADMAMYRAKNRGKNRIEFYDGEEKS 1019


>gi|33602090|ref|NP_889650.1| hypothetical protein BB3114 [Bordetella bronchiseptica RB50]
 gi|33576528|emb|CAE33606.1| putative membrane protein [Bordetella bronchiseptica RB50]
          Length = 475

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 61/181 (33%), Positives = 96/181 (53%), Gaps = 10/181 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSY-NEKLSIVFFDIDY 138
           G  + E   +   +++L+ ID L+   N           I+ L  + ++ L++V  D+D+
Sbjct: 294 GLDITERKRAELALTRLATIDSLTDCWNRAEILKILRQEITRLRQHPDQPLAVVMLDLDH 353

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND  GH VGD  + + SDQL        FVGR+GGEEF A   G     A  +A+ 
Sbjct: 354 FKQLNDLHGHLVGDAALRYFSDQLRSNLRGTDFVGRIGGEEFLALLPGCDGDAALAMADR 413

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           LR  + N     + G +  +++S GIA    ++  +S ++ RAD ALY AK+ GR+R V 
Sbjct: 414 LRAALRNDPFT-TEGQAAPLSVSVGIAFATPEDTAVSDVMRRADTALYEAKRRGRDRAVV 472

Query: 258 F 258
           +
Sbjct: 473 Y 473


>gi|238761891|ref|ZP_04622865.1| Predicted diguanylate cyclase [Yersinia kristensenii ATCC 33638]
 gi|238700005|gb|EEP92748.1| Predicted diguanylate cyclase [Yersinia kristensenii ATCC 33638]
          Length = 366

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 113/252 (44%), Gaps = 20/252 (7%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYIL--VENLSLVIISITISLLLGYIS 86
           +  S+F   FI+T+    N   F +   P       L   +N+  +I ++ + L+   + 
Sbjct: 108 LLLSLFTIFFISTIALSDNFLAFCLHTVPSALTVIFLDDFQNIFRIIFTVMLPLIGFSLH 167

Query: 87  GSILKE-----------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSI 131
             +L+            L+    + S LS ID L+ L N     + L +   +      +
Sbjct: 168 HLMLRRSDDFTRKLVAHLYNEREKFSDLSMIDPLTSLYNRRGLENKLETLLAQSPGNHYV 227

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK  NDN+GH +GD+ +  ++  +     +   V R GGEEF       SE+ 
Sbjct: 228 LLLDIDHFKAYNDNYGHTMGDQALVRVAAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEY 287

Query: 192 AAILANDLRKIIENSQINISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           A  LA  +R+ +    I       +   +T+SAGI+     +  S++   AD+ALY AKK
Sbjct: 288 ATQLAERVRQRVLGLDIPHVFNHKVSTTVTLSAGISPLQSYDLASSL-KAADEALYRAKK 346

Query: 250 SGRNRVVCFSDI 261
            GRN+V    D 
Sbjct: 347 DGRNKVAFAKDE 358


>gi|229521336|ref|ZP_04410755.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
 gi|229341434|gb|EEO06437.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
          Length = 372

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 8/176 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L+    ++  LS  D L+GL N    +  L           +    V  DID FK +N
Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDSQQPFVCVMIDIDGFKAVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH VGDKV+  +++ L   F +   V RLGG+EF      +       +A  + + I
Sbjct: 253 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETDTAGGVYIAEQVCRAI 312

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   I++ +      ++S G+A      +    ++  ADQA+Y+AK SG+NRV  F
Sbjct: 313 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHELLRAADQAVYLAKNSGKNRVCAF 368


>gi|126176100|ref|YP_001052249.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella baltica OS155]
 gi|125999305|gb|ABN63380.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS155]
          Length = 1497

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 11/191 (5%)

Query: 85   ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
            +  S + E   +   + +L+  D L+GL N S F S L           EKL+++F D+D
Sbjct: 1044 VVFSDITERKRTEADLRRLANYDVLTGLPNRSLFSSRLLQSIQAAQQTGEKLALLFLDLD 1103

Query: 138  YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILA 196
             FK +ND++GH +GD ++   S +L     +   + R GG+EF      + S  +   +A
Sbjct: 1104 RFKHVNDSYGHSMGDALLVEASSRLQSCIASEHMLCRFGGDEFVILLRNANSIDDINHIA 1163

Query: 197  NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
              L + I  +   +  G   +I+ S GI+            I  AD A+Y AK+ GR   
Sbjct: 1164 ERLLEQI-VAPFKLY-GREFYISTSIGISIWPDYAVQPEAFIKNADLAMYHAKEEGRGNF 1221

Query: 256  VCFSDIENNTC 266
              +S   N   
Sbjct: 1222 QYYSSERNAQA 1232


>gi|71908712|ref|YP_286299.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71848333|gb|AAZ47829.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 1038

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 13/213 (6%)

Query: 64  ILVENLSLVIISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  E L++  +      +  ++S  + + +   +  +I  L+  D L+ L N       L
Sbjct: 562 IYPEWLTISAVRGQHGEITHFVSSFLDITKRKEAEEQIQFLALYDPLTHLPNRRLLNERL 621

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                  G      +++F D+D FK IND+ GH +GD ++  ++ +L     +   V RL
Sbjct: 622 SKALTSSGRQRRHAALLFIDLDNFKMINDSMGHDIGDLLLRQVALRLRESVRSNDTVSRL 681

Query: 176 GGEEFAAAALGSSE--QEAAILANDL-RKIIENSQINISSGP-SIHITISAG-IAERCHK 230
           GG+EF       S    +A      + +K++++       G  S H T S G I      
Sbjct: 682 GGDEFVILLEELSPNIHDATTQIEHIAQKMLDSLVQPYKFGEFSHHCTASIGAIPFMDAT 741

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           E I +++  AD A+Y AK +G+NR+  F     
Sbjct: 742 ETIESLLKSADMAMYKAKAAGKNRLFFFDPAMQ 774


>gi|332162863|ref|YP_004299440.1| hypothetical protein YE105_C3243 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604293|emb|CBY25791.1| conserved putative membrane protein [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325667093|gb|ADZ43737.1| hypothetical protein YE105_C3243 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 854

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 59/188 (31%), Positives = 86/188 (45%), Gaps = 11/188 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNH---SAFISS----LGSYNEKLSIVFFDIDY 138
           + S +     +  RI  LS  D L+GL N      F+ +    L +    L I+  D+D 
Sbjct: 411 TASDITREIEAQERIQHLSLHDALTGLPNRLRMKEFLENKLHNLAAAPHPLVILNVDLDK 470

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK +ND FGH  GD+V+  +S++L         V R GG+EF     G SS +E   L  
Sbjct: 471 FKPVNDTFGHVAGDQVLHQVSERLRSCLRDQDLVARQGGDEFILIISGLSSTKEIEQLCA 530

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            +   IE+    + +   I I+ S GIA           ++  AD A+Y AK SG NR  
Sbjct: 531 RVIARIES--PYLINEKDIFISASIGIALAPQDSMQAEELLRFADIAMYEAKNSGSNRWS 588

Query: 257 CFSDIENN 264
            +S   N+
Sbjct: 589 FYSSEMND 596


>gi|300931169|ref|ZP_07146515.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
 gi|300461002|gb|EFK24495.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
          Length = 558

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQACHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 536 LADRRLYLAKQAGRNRVCA 554


>gi|269103399|ref|ZP_06156096.1| putative c-di-GMP phosphodiesterase A-related protein
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268163297|gb|EEZ41793.1| putative c-di-GMP phosphodiesterase A-related protein
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 674

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 78/181 (43%), Gaps = 15/181 (8%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVG 151
                I QL   D L+GL N   F   L  + +    L +++ DID FK IND+ GH +G
Sbjct: 239 EQQEHIEQLIHTDPLTGLYNRHGFTRQLEQHIQQQIPLLMLYLDIDNFKNINDSLGHNIG 298

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-----EQEAAILANDLRKIIENS 206
           D+V+  + ++L  +      +G LGG+EF      +      EQ    + N + +  +  
Sbjct: 299 DRVLQEIGNRLSHLLPKHAIIGHLGGDEFCVLLPQADSEFSGEQLCQNVINQINQPFDLH 358

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                     H+  S G+ +          ++  AD A+Y AK  GRNR + F D  N  
Sbjct: 359 HFRK------HLACSIGLVQYPGDGNDARILLQNADTAMYEAKHRGRNRFIKFDDAMNKE 412

Query: 266 C 266
            
Sbjct: 413 A 413


>gi|153871118|ref|ZP_02000369.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152072417|gb|EDN69632.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 866

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 80/172 (46%), Gaps = 13/172 (7%)

Query: 101 SQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            + + ID L+ + N + F        S    Y  +LS++  DID FK IND +GH  GD 
Sbjct: 696 KREATIDGLTKVYNRNYFDMYLAQEVSRAKRYKRELSLIITDIDLFKNINDTYGHLTGDT 755

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+   +  ++        V R GGEEF      +  +   I+A  + + I+         
Sbjct: 756 VLQEFTQIIMQQCRRSDLVARFGGEEFIILLPETPLKGGTIVAERMCQRIDAHIFQEVE- 814

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
              HIT S G+A          ++ RAD ALY AKK+GRN+VV   DI+  T
Sbjct: 815 ---HITASFGVASLITDRDGRELLRRADSALYQAKKNGRNQVVV--DIKMKT 861


>gi|56460198|ref|YP_155479.1| signal protein [Idiomarina loihiensis L2TR]
 gi|56179208|gb|AAV81930.1| Signaling protein with a periplasmic binding domain and GGDEF
           domain [Idiomarina loihiensis L2TR]
          Length = 476

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 99/206 (48%), Gaps = 14/206 (6%)

Query: 68  NLSLVIISITISLLLGY-ISGSILKE----LFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           ++++ + S+ + +++G+ I  S L+        +  RI  ++  D L+GL N +     L
Sbjct: 270 DIAMKVGSVVLLIIVGFAIWNSRLRREIKLRKAAERRIRHIATHDELTGLPNRNLMQDRL 329

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                      +  +++F D+D FK+IND FGH  GD+++   + ++  +      V R 
Sbjct: 330 EQTISQNERTGKPFAVLFLDLDGFKKINDEFGHSYGDELLIQAAHRMGTLLRRSDTVCRH 389

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPIS 234
           GG+EF      ++    + LA   + +++ ++        + I++S G+A    +     
Sbjct: 390 GGDEFVILLP-TANSVGSSLAVSRKLVVQLAKPYKVKKQQLEISVSIGVAIYPKNGTNTD 448

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSD 260
            ++  AD+A+Y AK +G+N V    D
Sbjct: 449 DLLRSADKAMYRAKAAGKNDVRLAGD 474


>gi|330878420|gb|EGH12569.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 825

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 12/190 (6%)

Query: 80  LLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           LL  +++  + +  L  +  R+   +  D L+GL N + F S L S            ++
Sbjct: 360 LLTHFVAVFADISSLKHAQARLDYRAHHDPLTGLPNRTLFESRLQSALLHSEESGSLGAV 419

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQ 190
           +F D+D FK IND+ GHP+GD ++  ++ +L         V RLGG+EF     G     
Sbjct: 420 LFLDLDRFKHINDSLGHPIGDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQPG 479

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKK 249
           +A  +AN L      S    +    ++I+ S G          ++T++  AD A+Y +K 
Sbjct: 480 DAKAIANKLLACF--STPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKA 537

Query: 250 SGRNRVVCFS 259
            GRNRV  ++
Sbjct: 538 QGRNRVESYT 547


>gi|294626314|ref|ZP_06704916.1| sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
            11122]
 gi|292599315|gb|EFF43450.1| sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
            11122]
          Length = 1065

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 8/176 (4%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
            +L  L I  +   + +  D L+GL N   F  +L             L +   DID+FK+
Sbjct: 890  LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSARPLVLAILDIDHFKR 949

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            IND++ H  GD V+  +   L           RLGGEEFA     ++  EA  L   +R 
Sbjct: 950  INDHYSHASGDAVLHEVGVLLTAAARASDLPARLGGEEFALLLADTTLDEANALCLRIRA 1009

Query: 202  IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +  +++ N +S   + +T SAG+A     +  S+++ RAD ALY AK +GR+R+  
Sbjct: 1010 LF-HARHNWASVEGLQVTFSAGVAALRDDDTGSSLMQRADHALYEAKSAGRDRICV 1064


>gi|251788333|ref|YP_003003054.1| diguanylate cyclase [Dickeya zeae Ech1591]
 gi|247536954|gb|ACT05575.1| diguanylate cyclase [Dickeya zeae Ech1591]
          Length = 536

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 89/169 (52%), Gaps = 5/169 (2%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHP 149
           L     R+S  +  D LSG+LN    + S+       +K+S++  DID+FK IND+FGH 
Sbjct: 357 LHKRIGRLSSEAHTDPLSGMLNRRGMLESMEEVRGEYKKVSVIAIDIDHFKVINDSFGHD 416

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD+VI  LS Q+   F     V R+GGEEF     G+    A ++A  LR  + N+ I 
Sbjct: 417 MGDEVIRKLSQQIRKNFRKTDLVCRIGGEEFLILLPGADIHVATVIAERLRNNVANT-IY 475

Query: 210 ISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +       +TIS G+      K  +   I  AD ALY AK SGRN+VV 
Sbjct: 476 MPGSQHHQVTISVGVTTFNPQKSTLDVAIKTADNALYKAKNSGRNQVVV 524


>gi|237653347|ref|YP_002889661.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
 gi|237624594|gb|ACR01284.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
          Length = 790

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 11/187 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + E   +  RI  L+  D L+ L N +     L              +++  D+D FK
Sbjct: 348 SDITERKEAEARILHLAHHDPLTNLPNRALLNDRLSQSLLQARRDGRGAAVLLLDLDRFK 407

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH  GD ++  +  +   V      + RL G+EF      ++  + +  A+  R
Sbjct: 408 TINDTLGHERGDSLLLEICARCRRVLRDTDTLARLSGDEFVIVLPDATTADVS--ADTAR 465

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +I++   +    G   I IT S GIA         ST++  AD A++ AK++GRN    +
Sbjct: 466 RILDAIALPCRLGEHEISITASIGIALFPRDGGDESTLLRNADAAMHRAKEAGRNGFEFY 525

Query: 259 SDIENNT 265
           ++  N +
Sbjct: 526 TEDMNTS 532


>gi|222833111|gb|EEE71588.1| predicted protein [Populus trichocarpa]
          Length = 496

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 64/252 (25%), Positives = 116/252 (46%), Gaps = 27/252 (10%)

Query: 28  MIYFSIFFSIFIATVIFIANI------FLFYIGLTPFYGLEYILVENLSLVIISIT-ISL 80
           M+  ++ + +F+  ++ + +       F   +  +P   LE      L L ++SI  +++
Sbjct: 232 MLLCAMRYRLFVVALLNLVSCAIKLATFSHVLFSSPGTELETTFSFRLGLAMLSIGPLAV 291

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVF 133
               ++   +       +++      D L+GLL  ++F+         L    +  +++ 
Sbjct: 292 ACTLMAFKDM------LSKLRHAVNHDALTGLLARTSFLERAQRTLERLQRERQSGAMLM 345

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D+FK IND  GH  GD+V+  +S +L         +GRLGGEEFA    G+    A 
Sbjct: 346 LDLDHFKHINDRHGHAAGDRVLQEVSARLSQALRPHELIGRLGGEEFAVLLPGADCVTAR 405

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGI-----AERCHKEPISTIIYRADQALYVAK 248
            +A  L +     +I+++ G +I  T+S GI     A       +S ++  AD ALY AK
Sbjct: 406 AVAQRLCEATREIRIDMNDGAAICPTLSIGIGCTNMAYPPLG--LSALLRMADTALYQAK 463

Query: 249 KSGRNRVVCFSD 260
            SGR+R     +
Sbjct: 464 ASGRDRYFVAGE 475


>gi|206563403|ref|YP_002234166.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
 gi|198039443|emb|CAR55410.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
          Length = 516

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 88/185 (47%), Gaps = 9/185 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFF 134
             I    +     +   I  L+R D L+GL N     ++L     +         +I++ 
Sbjct: 321 AVIIVEDVTARRQTEQHIRHLARHDALTGLPNRHELHAALKRMLARRPRLPSPAFAIMYL 380

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND FGH  GD+V+  ++++L           R+GG+EF  A   ++    +I
Sbjct: 381 DLDGFKSINDRFGHQAGDEVLTQVAERLGKTLPPGELAARIGGDEFVVAIDDTTMHACSI 440

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           LA  + + I ++   +S+G ++ I IS GIA          +I +AD ALY AK +G+  
Sbjct: 441 LAARIIRQI-SAPYGLSNGETVCIGISIGIALDDGHGSPDELIRQADSALYDAKSAGKGI 499

Query: 255 VVCFS 259
              +S
Sbjct: 500 YCFYS 504


>gi|23014533|ref|ZP_00054344.1| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 594

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 59/202 (29%), Positives = 95/202 (47%), Gaps = 15/202 (7%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE- 127
           L  V+ + + S L   I+   + +   +  R+  L+ ID L+G+ N   F  +LG     
Sbjct: 387 LMSVLKAQSASGLRVVIAHQNISKRKEAEIRLRHLAMIDGLTGIANRRTFDETLGQEWRR 446

Query: 128 ------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEF 180
                  L+++  D+D+FK  ND++GH  GD+ +  ++  L          V R GGEEF
Sbjct: 447 ASRAGTPLALLMIDVDHFKAYNDHYGHQAGDECLKTVAATLAATAKRPADLVARYGGEEF 506

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAG------IAERCHKEPI 233
                G +  +A  LA  +R  +    + +++S  S  +TIS G      +A +      
Sbjct: 507 GVILPGCTLTDAQTLAEKMRLAVAELHLPHLASQTSGEVTISIGVSCLNLVATQGDSLDT 566

Query: 234 STIIYRADQALYVAKKSGRNRV 255
            ++I  AD ALY AK SGRN V
Sbjct: 567 QSLIAEADTALYRAKTSGRNCV 588


>gi|332756112|gb|EGJ86465.1| cellulose synthesis regulatory protein [Shigella flexneri 4343-70]
          Length = 475

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LLL  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 273 LTLLWALFTTMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 332

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 333 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 392

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G++  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 393 CVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 452

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 453 LADRRLYLAKQAGRNRV-FASD 473


>gi|300818294|ref|ZP_07098505.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
 gi|300529185|gb|EFK50247.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
          Length = 371

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVVYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      +R+ +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVREGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|146305203|ref|YP_001185668.1| diguanylate cyclase [Pseudomonas mendocina ymp]
 gi|145573404|gb|ABP82936.1| diguanylate cyclase [Pseudomonas mendocina ymp]
          Length = 614

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 58/172 (33%), Positives = 84/172 (48%), Gaps = 8/172 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++         Q S +D L+GL N +A+   L         Y  +L +   D+D+FK+IN
Sbjct: 441 QQFREHIEEQRQKSLLDPLTGLPNRAAWSERLELEVARRARYGGELLLAVLDVDHFKRIN 500

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD+V+  ++ +L        F+ R GGEEF      +  +    L   LR  I
Sbjct: 501 DGYGHLAGDRVLKIIAGELHKRLRKTDFIARFGGEEFVLLIPATPLEGGMQLLETLRAAI 560

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           E    +   G  + IT+S G+AE    E    +  RADQALY AK +GRNRV
Sbjct: 561 EACPFHFK-GEPVTITLSTGLAEFRDGESAEAVFERADQALYRAKGNGRNRV 611


>gi|66044410|ref|YP_234251.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63255117|gb|AAY36213.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 748

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
            S L+E       ++ ++  D L+ L N +  ++ L        S  E+ +++F D+D F
Sbjct: 300 QSRLEERERMSEELTYIAFHDELTSLFNRAYLMNELTTAFETRKSRYERATVLFLDLDGF 359

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
           K +ND+ GH  GD+++  ++++L     +   + R+GG+EFA   +G  + + A  +A  
Sbjct: 360 KVVNDSMGHLAGDQLLKGVANRLQTCVRSNDVLARIGGDEFAILLMGKDQPETAVKMAER 419

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           +   + N+ I I  G  I I+ S GI            ++  AD A+Y AKK GR R   
Sbjct: 420 IVSQL-NTAIQI-EGQDIFISCSIGIVSAGESHTKPEELLRDADVAMYSAKKQGRGRWSI 477

Query: 258 FSDIENNTC 266
           F+       
Sbjct: 478 FNTSMREAA 486


>gi|115525310|ref|YP_782221.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
 gi|115519257|gb|ABJ07241.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
          Length = 428

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 59/249 (23%), Positives = 102/249 (40%), Gaps = 30/249 (12%)

Query: 23  SPHTFMIYFSIFFSIFIATVIFIANIFLFYIG-LTPFYGLEYILVENLSLVIISITISLL 81
           +P   +I   +  + F   ++F     L  +  L PFYG             I++   LL
Sbjct: 163 TPRHGIIMIFLLATPFTWAMVFSPIPHLAVVAALVPFYG-------------IAVAFILL 209

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGS-------YNEKLS 130
             Y    +L +LF+S     +L+  D L+GL N       F   LGS       + +  +
Sbjct: 210 ENY---QVLLDLFLSEQENRRLANADPLTGLPNRIMKRRCFDDLLGSAAIAADGHGQHFT 266

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
               D+D FK  ND +GH  GD ++  ++ +L         + R+GG+EF          
Sbjct: 267 AFCLDLDGFKAANDRYGHAAGDAILVAVAHRLRDSVRDIDLIFRVGGDEFVILLPALDTD 326

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
           +A  +A  +   I     ++     + I +S G A      +    ++  AD+A+Y AK+
Sbjct: 327 QAEAVAARIINAISQ-PFDVDRRHQLRIGVSIGGACFPRDGQTADELLRSADRAMYEAKR 385

Query: 250 SGRNRVVCF 258
            G+   V +
Sbjct: 386 RGKGGFVAY 394


>gi|152965578|ref|YP_001361362.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151360095|gb|ABS03098.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 537

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 6/182 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDN 145
           ++   +     + +  D L+ L N   F   L     +      ++++ D+D FK +ND 
Sbjct: 81  RDRQEALEAAMRQALHDPLTDLGNRQLFTDRLQHALARRGSKACAVLYLDLDGFKTVNDT 140

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIE 204
            GH VGD V+  +S +L         V R GG+EFA      S++  A+ +A+ +   I 
Sbjct: 141 HGHGVGDTVLVEVSHRLRAAVRPEDTVARFGGDEFAVLCEDLSDELNASRIADRVVSSIA 200

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           N  I    G  + IT S GIA    +   S ++ RAD ALY AK+SG+ R   F +    
Sbjct: 201 NHPIEFGDGRKLTITPSVGIALARDEADASKLLRRADAALYRAKESGKARSELFDERMQA 260

Query: 265 TC 266
             
Sbjct: 261 QA 262


>gi|308070120|ref|YP_003871725.1| response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Paenibacillus polymyxa E681]
 gi|305859399|gb|ADM71187.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Paenibacillus polymyxa E681]
          Length = 299

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 80/173 (46%), Gaps = 12/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           +EL     ++   +  D L+GL N   F   L              S++  DID FK IN
Sbjct: 124 QELERVNLQLETRASTDPLTGLKNRRYFQDQLLASLMSFRESGVSFSLLIIDIDRFKSIN 183

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHPVGD V+  L++ L  +      V R GGEEF      + ++EA   A   R   
Sbjct: 184 DTYGHPVGDLVLTNLAELLQSMSRDRDIVARYGGEEFVIILPDNDQEEAIHTAERYRSTT 243

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +            IT+S G+A    ++   TI+++AD ALY +K  GRNRV 
Sbjct: 244 ASM-----DWGEYAITVSIGVATVTQEDTEQTIVHQADLALYASKSGGRNRVT 291


>gi|330970419|gb|EGH70485.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 332

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
              + E     N + +L+  D L+   N   F                 L+ +  DID F
Sbjct: 154 AEDITEKKQLENELQRLATTDVLTQSSNRRHFFECAQREFELARLNGTPLAFLLLDIDDF 213

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND +GH  GD V+  +++            GR+GGEEFAA   G +   A  +A  L
Sbjct: 214 KLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCAPDMAMQIAERL 273

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           ++ I+      S+G +  IT S G+      +P + T+  RAD A+Y AK+ G+N++V 
Sbjct: 274 QREIQRQNFQ-SAGTTFSITASQGLTNLGPDDPSLETLYGRADAAMYQAKRQGKNQIVL 331


>gi|331007523|ref|ZP_08330688.1| hypothetical protein IMCC1989_1625 [gamma proteobacterium IMCC1989]
 gi|330418672|gb|EGG93173.1| hypothetical protein IMCC1989_1625 [gamma proteobacterium IMCC1989]
          Length = 338

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 10/180 (5%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
           +SY    Q +  D L+GL N  A   ++         Y +   ++  DID+FK INDN+G
Sbjct: 145 LSYRDAIQQALSDPLTGLANRGALEQAIAHQWQMAQRYEQHFCVLMLDIDHFKSINDNYG 204

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD V+  ++  +           R GGEEF      S+   A I+A  +R+ +    
Sbjct: 205 HGVGDNVLKAVAHSISDTTRQTDVAYRYGGEEFVVILNKSALSGALIIAERIRENVAALS 264

Query: 208 INIS--SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           I +       + +TIS G +   +      ++ +AD+ LY AK +GRNRV  FS  E NT
Sbjct: 265 IPVDTKGKEKVKVTISIGGSCSSYCSDTQDLLRQADKVLYCAKNAGRNRVE-FSSKEGNT 323


>gi|325921139|ref|ZP_08183010.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           gardneri ATCC 19865]
 gi|325548411|gb|EGD19394.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           gardneri ATCC 19865]
          Length = 959

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 85/176 (48%), Gaps = 8/176 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           +L  L I  +   + +  D L+GL N   F  +L             L +   DID+FK+
Sbjct: 784 LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSGRSLVLAILDIDHFKR 843

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND++ H  GD V+  +   L+          RLGGEEFA     +S +EA  L   +R 
Sbjct: 844 INDHYSHASGDAVLHEVGVLLIAAARASDLPARLGGEEFALLLADTSLEEAQALCLRIRA 903

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +    Q +      + +T SAG+AE    +  S+++ RAD ALY AK +GR+R+  
Sbjct: 904 LFHARQ-DWGGVDGLQVTFSAGVAELRDDDTGSSLMQRADHALYEAKSAGRDRICV 958


>gi|320326437|gb|EFW82490.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320331591|gb|EFW87529.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330985840|gb|EGH83943.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 420

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 119/285 (41%), Gaps = 36/285 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL------FYIG 54
           + +S    L +WL  +    +     +M    + +++F+ +   +   +L          
Sbjct: 129 LEQSYPVELQLWLA-DIRWPALHGA-WMSLIQLSYAMFLVSFGVLIWQYLEKPRPLHAAQ 186

Query: 55  LTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           +    GL + L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL 
Sbjct: 187 IVGLLGLFWALPKTFILPFTLNILCSQVMLMIAAAVAHEAY-------QMAFRDELTGLP 239

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A    +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        
Sbjct: 240 GRRALNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAY 299

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------------------- 214
           R GGEEFA      +  E       +R+ I N +I + +                     
Sbjct: 300 RYGGEEFAIVFAAKTIDECMPHLEAIRETIANYEIQLRNKDSRPQDDQQGRQRRGGAQAG 359

Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S+ +T+S G+AER         ++  ADQALY AK +GRN VV +
Sbjct: 360 SVSVTVSIGVAERQPEHRTPEEVLKSADQALYAAKGAGRNCVVAY 404


>gi|302060301|ref|ZP_07251842.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato K40]
          Length = 711

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
            S L+E       ++ ++  D L+ L N +  ++ L         + E+ +++F D+D F
Sbjct: 263 QSRLQERERISEELAYIAFHDELTALFNRAYLMNELADAFSNPDHHYERATVLFLDLDGF 322

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
           K +ND+ GH  GD+++  ++++L         + R+GG+EFA   +G  + + A  +A  
Sbjct: 323 KVVNDSMGHLAGDQLLKRVANRLQNCVRANDVLARIGGDEFAILLVGKDQPETAVKMAER 382

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           +   +  + I I  G  I I+ S GI            ++  AD A+Y AKK GR R   
Sbjct: 383 IVSQLHAA-IEI-EGQDIFISCSIGIVTAGEGHSKPEDLLRDADVAMYSAKKQGRGRWSL 440

Query: 258 FSDIENNTC 266
           F+       
Sbjct: 441 FNASMREAA 449


>gi|297578815|ref|ZP_06940743.1| GGDEF family protein [Vibrio cholerae RC385]
 gi|297536409|gb|EFH75242.1| GGDEF family protein [Vibrio cholerae RC385]
          Length = 372

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 8/176 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L+    ++  LS  D L+GL N    +  L           +    V  DID FK +N
Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH VGDKV+  +++ L   F +   V RLGG+EF      ++      +A  + + I
Sbjct: 253 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETNTAGGVYIAEQVCRAI 312

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   I++ +      ++S G+A      +    ++  ADQA+Y+AK SG+NRV  F
Sbjct: 313 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHELLRAADQAVYLAKNSGKNRVCAF 368


>gi|296448104|ref|ZP_06890005.1| diguanylate cyclase [Methylosinus trichosporium OB3b]
 gi|296254369|gb|EFH01495.1| diguanylate cyclase [Methylosinus trichosporium OB3b]
          Length = 368

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 87/178 (48%), Gaps = 8/178 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           S   + EL  +     +L+  D L+ +     F ++L            +LS++  DID+
Sbjct: 186 SRRQIDELRATLAETQELNVRDSLTQVYTRRYFDTTLERVVREAGGSGGELSLIMADIDH 245

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND  GHP+GD+V+   +  +     T   V R GGEEFA     +   +A +LA  
Sbjct: 246 FKKINDTHGHPIGDEVLKNFARTMTSHVETKDTVARYGGEEFAIILPATGAAQARLLAER 305

Query: 199 LRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +R   E  +  I  G  I  IT S G+A     E  + +I RAD  LYV+K  GRNRV
Sbjct: 306 IRSEFETKKWAIKGGRPIGRITASFGVARLQPGEGPAGLIQRADAKLYVSKSGGRNRV 363


>gi|269964567|ref|ZP_06178806.1| hypothetical protein VMC_02360 [Vibrio alginolyticus 40B]
 gi|269830694|gb|EEZ84914.1| hypothetical protein VMC_02360 [Vibrio alginolyticus 40B]
          Length = 815

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 91/190 (47%), Gaps = 13/190 (6%)

Query: 81  LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           L+ YI     +        ++ +++  D L+ L N +  +S L  +        +  + +
Sbjct: 370 LINYICVFEDISVRKAHEEKLQRMAFYDPLTNLPNRTHLLSLLEQHIETGHKSQQTFATL 429

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F DID+FK IND+ GH  GD++++ L+ +L  V      V R+GG+EF           A
Sbjct: 430 FLDIDHFKHINDSMGHFCGDQLLSKLAIRLQDVLHLNAHVARIGGDEFVIILPDIHSDVA 489

Query: 193 AILANDLRKIIE--NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
             L   +  I+       ++++  S+ ++ S GIA      +   T++  AD A+Y+AKK
Sbjct: 490 --LLETVGDILSVFQQPFDLANHDSLRVSTSIGIALYPRDGQDSETLLKNADTAMYLAKK 547

Query: 250 SGRNRVVCFS 259
           +GRN    +S
Sbjct: 548 NGRNGYAFYS 557


>gi|167908351|ref|ZP_02495556.1| diguanylate cyclase [Burkholderia pseudomallei NCTC 13177]
          Length = 311

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 9/178 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           + +E   +  ++ + +  D L+G+ N   F + L         Y   LS++ FD+D+FK 
Sbjct: 134 MQREREEAVAKLQEYANRDGLTGIANRRFFEARLRDEFSRWQRYGGNLSVLLFDLDHFKT 193

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH VGD V+  ++ ++V V  +    GR GGEEFA     +S  EA ++A  +R+
Sbjct: 194 INDRFGHVVGDNVLRVMAQRVVDVVRSQDTFGRFGGEEFALLLPCTSLDEAMLVAEKIRQ 253

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
            I ++ I  + G  + +T S G A          T++  AD ALY AK+ GRN  V F
Sbjct: 254 TIGSTPIE-AEGVRVPVTASVGGAAAHAGALTHETLVNEADAALYRAKRQGRNCSVAF 310


>gi|95931184|ref|ZP_01313906.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95132746|gb|EAT14423.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 951

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 11/190 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
                + L      +  +S  D L+GL N   F       I      + ++S++F D+D 
Sbjct: 512 QQQAEERLEEKKQLLDHMSNHDSLTGLPNRRLFQDRLYHAIERARRSSSEMSVLFIDLDR 571

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILAN 197
           FK+IND+ GH +GDK++  ++ ++         + RLGG+EF      SS    AA++A 
Sbjct: 572 FKKINDSLGHELGDKLLISVARRMQSHLRRSDTLARLGGDEFVVILEESSHSHFAAVIAR 631

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           +L    E S+        + +T S GI+   +  E +  ++  AD A+Y AK  GRN   
Sbjct: 632 NLLN--ELSEAFDVESHRLFVTASIGISRYPYDAEDVVGLMSSADAAMYHAKSRGRNNFQ 689

Query: 257 CFSDIENNTC 266
            ++   N   
Sbjct: 690 FYAPEMNGRA 699


>gi|167916704|ref|ZP_02503795.1| diguanylate cyclase [Burkholderia pseudomallei 112]
 gi|217424330|ref|ZP_03455829.1| diguanylate cyclase [Burkholderia pseudomallei 576]
 gi|237509235|ref|ZP_04521950.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346]
 gi|254296646|ref|ZP_04964102.1| diguanylate cyclase [Burkholderia pseudomallei 406e]
 gi|157806512|gb|EDO83682.1| diguanylate cyclase [Burkholderia pseudomallei 406e]
 gi|217392795|gb|EEC32818.1| diguanylate cyclase [Burkholderia pseudomallei 576]
 gi|235001440|gb|EEP50864.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346]
          Length = 311

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 91/178 (51%), Gaps = 9/178 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           + +E   +  ++ + +  D L+G+ N   F + L         Y   LS++ FD+D+FK 
Sbjct: 134 MQREREEAVAKLQEYANRDGLTGIANRRFFEARLRDEFSRWQRYGGNLSVLLFDLDHFKT 193

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH VGD V+  ++ ++  V  +    GR GGEEFA     +S  EA  +A  +R+
Sbjct: 194 INDRFGHVVGDNVLRVMAQRVADVVRSQDTFGRFGGEEFALLLPCTSLDEAMHVAEKIRQ 253

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
            I ++ I  + G  + +T S G A          T++  AD ALY AK+ GRN  V F
Sbjct: 254 TIGSTPIE-AEGVRVPVTASVGGAAAHAGALTHETLVNEADAALYRAKRQGRNCSVAF 310


>gi|325277068|ref|ZP_08142725.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas sp. TJI-51]
 gi|324097798|gb|EGB95987.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas sp. TJI-51]
          Length = 1001

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 15/192 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + + E   S  RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 626 TDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAERQKAWVVLMFLDLDRFK 685

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAIL 195
            IND+ GH  GD+++  ++ +L+        V R+GG+EF       + +E     A  +
Sbjct: 686 PINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQPRATREMALNRAIHV 745

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
           A ++   +   +  +       +T S GIA        +S ++  AD A+Y AK+ G+N 
Sbjct: 746 AENILASL--VRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKNN 803

Query: 255 VVCFSDIENNTC 266
              +    N + 
Sbjct: 804 FQFYQAEMNASA 815


>gi|294490786|gb|ADE89542.1| diguanylate cyclase [Escherichia coli IHE3034]
 gi|307626569|gb|ADN70873.1| putative diguanylate cyclase [Escherichia coli UM146]
 gi|323952448|gb|EGB48321.1| diguanylate cyclase domain-containing protein [Escherichia coli
           H252]
          Length = 558

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 536 LADRRLYLAKQAGRNRVCA 554


>gi|293605293|ref|ZP_06687679.1| HAMP domain/GAF domain/GGDEF domain protein [Achromobacter
           piechaudii ATCC 43553]
 gi|292816349|gb|EFF75444.1| HAMP domain/GAF domain/GGDEF domain protein [Achromobacter
           piechaudii ATCC 43553]
          Length = 531

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 110/252 (43%), Gaps = 16/252 (6%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITI-- 78
           + SP   ++  S+  +I    +  I    L Y    P   L   L   +     + T   
Sbjct: 268 ALSPLKALLRESLRLAIPAVLLTLIVVSALAYAIARPLTRLTRALASPVEADPDTATPDE 327

Query: 79  -------SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEK 128
                  +  L     + L +     +R++  S  D ++GL+N  A    +  L +    
Sbjct: 328 PRAWYAEADALRQALAARLAQHNHEVDRLNAESMTDPMTGLMNRRAMRLRLDELIAARSA 387

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            +++  D+D+FKQIND  GHPVGD+V+  L+  L           R+GGEEF     G++
Sbjct: 388 FAVIALDVDHFKQINDTHGHPVGDQVLIALARTLRASVRQQDRPFRVGGEEFVVIVPGAT 447

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVA 247
           E  A   A  +R  +  + +    G    +T+S G+A      P    ++  ADQALY +
Sbjct: 448 EPVALAAAERIRASVAQTPMPQGVGQ---VTVSVGLALWPGDAPSPQAVVKCADQALYAS 504

Query: 248 KKSGRNRVVCFS 259
           K+ GRNRV  ++
Sbjct: 505 KQGGRNRVTRWN 516


>gi|123440926|ref|YP_001004917.1| HmsT protein [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122087887|emb|CAL10675.1| HmsT protein [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 366

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 69/251 (27%), Positives = 114/251 (45%), Gaps = 20/251 (7%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYIL--VENLSLVIISITISLLLGYIS 86
           +  S+F   FI+T+    N   F +   P       L   +N+  +I +I + L+   + 
Sbjct: 108 LLLSLFTIFFISTIALSDNFLAFCLHTAPAALTVIFLDDFQNIFRIIFTIMLPLIGFSLH 167

Query: 87  GSILKE-----------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSI 131
             +L+            L+    + S LS ID L+ L N     + L +   +      +
Sbjct: 168 HLMLRRSDDFTRKLVARLYNEREKFSDLSMIDPLTSLYNRRGLENKLETLLAQSPGNHYV 227

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK  NDN+GH +GD+ +  ++  +     +   V R GGEEF       SE+ 
Sbjct: 228 LLLDIDHFKAYNDNYGHTMGDQALVRVAAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEY 287

Query: 192 AAILANDLRKIIENSQINISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           A+ LA  +R+ +    I       +   +T+SAGI+     +  S++   AD+ALY AKK
Sbjct: 288 ASQLAERVRQRVLGLDIPHVFNHKVSTTVTLSAGISPLQPYDLASSL-KAADEALYRAKK 346

Query: 250 SGRNRVVCFSD 260
            GRN+V    D
Sbjct: 347 DGRNKVAFAED 357


>gi|119897962|ref|YP_933175.1| GGDEF/EAL/PAS/PAC-domain-containing protein [Azoarcus sp. BH72]
 gi|119670375|emb|CAL94288.1| GGDEF/EAL/PAS/PAC-domain containing protein [Azoarcus sp. BH72]
          Length = 790

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 16/186 (8%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNF 146
             + + I  L+  D L+GL N    +  L              +++F D+D FK +ND  
Sbjct: 349 KAAEDEIRHLAFYDPLTGLPNRRLLMDRLRHALATHARSRHHGALLFIDLDNFKTLNDTQ 408

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ------EAAILANDLR 200
           GH  GD ++  ++ +L         V RLGG+EF                +A      + 
Sbjct: 409 GHQYGDMLLRQVAARLSACVREADTVARLGGDEFVVMLEDLDRDKGAAARQAESAGEKIL 468

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
             + ++      G   H T S GI      +  I+ ++ RAD A+Y AK++GRN +  F 
Sbjct: 469 AALNDA--YQLDGREAHSTPSIGITLFDAADAEIAELLKRADLAMYQAKEAGRNTLRFFD 526

Query: 260 DIENNT 265
            +   T
Sbjct: 527 PVMQAT 532


>gi|104780910|ref|YP_607408.1| sensory box protein [Pseudomonas entomophila L48]
 gi|95109897|emb|CAK14602.1| putative sensory box protein [Pseudomonas entomophila L48]
          Length = 798

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 62/211 (29%), Positives = 99/211 (46%), Gaps = 14/211 (6%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           Y    P  GL ++  E  +  I     +L  GY++   + +L      +  LS  D L+G
Sbjct: 590 YRVCLPRAGLRWVRGEA-TPEIGDHGCTLWHGYLT--DISDLKRVEEELRALSITDSLTG 646

Query: 112 LLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           + N   F   L           + L+++  DID+FK+IND FGH VGD+V+  L  ++  
Sbjct: 647 IHNRRYFQERLRIELDRAQRDGQGLAVIMLDIDHFKRINDEFGHAVGDRVLRSLCQRIGQ 706

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                    RLGGEEF     G+  ++A +LA +L + + +  +         +T S G+
Sbjct: 707 RLRRTDVFCRLGGEEFMVLCPGNDAEQARLLALELWQGVRSVPVEGVG----RVTASFGV 762

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A     E    ++ RAD  +Y AK+ GR+RV
Sbjct: 763 AGWRPGEGADALLLRADAGVYAAKQGGRDRV 793


>gi|332761771|gb|EGJ92050.1| diguanylate cyclase domain protein [Shigella flexneri 2747-71]
 gi|332768488|gb|EGJ98671.1| diguanylate cyclase domain protein [Shigella flexneri 2930-71]
          Length = 366

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   L+ G++S     +L  
Sbjct: 137 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVVYPLMFGWVSYQTATKLAE 196

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 197 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 256

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      +R+ +   ++
Sbjct: 257 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVREGLNTLRL 316

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 317 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 364


>gi|329936833|ref|ZP_08286512.1| integral membrane phosphodiesterase [Streptomyces griseoaurantiacus
           M045]
 gi|329303758|gb|EGG47642.1| integral membrane phosphodiesterase [Streptomyces griseoaurantiacus
           M045]
          Length = 1095

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 80/199 (40%), Gaps = 21/199 (10%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN------------EKLSIV 132
            +   + E      ++   +  D L+ L N + F   +                   +++
Sbjct: 560 FNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTRRVQQALSGRRASDRGPALRGTAVL 619

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS---- 188
           F D+D FK +ND  GH  GD+++   + +L           RLGG+EFAA   G      
Sbjct: 620 FIDLDGFKAVNDTIGHQAGDELLVQAARRLQDSLRQGDTAARLGGDEFAALITGDGTREH 679

Query: 189 ---EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
              E+    LA+ LR  +  SQ     G  + +  S G+A          ++  AD A+Y
Sbjct: 680 AARERHIEELADRLR--VGLSQPYTIDGNDVRVAASIGVAFAEPGLGAGELLRNADLAMY 737

Query: 246 VAKKSGRNRVVCFSDIENN 264
            AK +G+NRV  ++     
Sbjct: 738 RAKAAGKNRVELYAPQMQQ 756


>gi|254457256|ref|ZP_05070684.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207086048|gb|EDZ63332.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 574

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 11/180 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           + KEL    + +   +  D L+GL N   F   L         +NE L++ F D+D FKQ
Sbjct: 129 VQKELREQKDILHHQAHHDALTGLPNRILFNDRLSQGIKKSKRHNEILALFFIDLDQFKQ 188

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLR 200
           IND+ GH  GD V+   S +          + RLGG+EF+  A G  E  EA++LAN   
Sbjct: 189 INDSLGHDTGDVVLKEASRRFSSKIREEDTLSRLGGDEFSVIAGGLKEASEASVLANKFI 248

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +   +  +    ++++T S GI+      +    ++  AD A+Y AK  GRN    +S
Sbjct: 249 ECMA--EPIVVGAHTLYLTCSIGISFYPQDGQSAENLLKYADVAMYKAKDEGRNNYQTYS 306


>gi|94265550|ref|ZP_01289297.1| GGDEF:GAF:Histidine kinase, HAMP region [delta proteobacterium
           MLMS-1]
 gi|93453950|gb|EAT04300.1| GGDEF:GAF:Histidine kinase, HAMP region [delta proteobacterium
           MLMS-1]
          Length = 595

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 12/185 (6%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIV 132
           LL  ++  I  E+ ++  R+ +L+  D L+GL +     +++  + +          S++
Sbjct: 409 LLAAVAEQI--EITLANARLYRLAITDGLTGLYSKRYCETAINKFRDTHAADQGRLFSVL 466

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK +ND  GHPVGD+V+  L++ +           R GGEEF    +    + A
Sbjct: 467 MLDLDHFKLVNDTHGHPVGDEVLIQLAELIRGSIRQDDIACRYGGEEF-IILVAEGIKAA 525

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
             +A  L + +        SG  +  TIS G A    H +  + +I  ADQALY AK  G
Sbjct: 526 EQIAERLCRAVAEHVFRCRSGLELRCTISIGGAGFPEHGQNAAEVIAAADQALYQAKNGG 585

Query: 252 RNRVV 256
           RNR  
Sbjct: 586 RNRWQ 590


>gi|91777509|ref|YP_552717.1| diguanylate cyclase [Burkholderia xenovorans LB400]
 gi|91690169|gb|ABE33367.1| periplasmic sensor diguanylate cyclase (GGDEF domain) [Burkholderia
           xenovorans LB400]
          Length = 591

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 89/183 (48%), Gaps = 11/183 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
             + +E       +   +  D L+ LLN  AF S          +   +L+++ FDID+F
Sbjct: 402 QQLERERGRLIQELKATAETDFLTHLLNRRAFESRARLSCAERNAAEPELALIMFDIDHF 461

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND +GH  GD  +  ++            V R GGEEFA  +      +A  +A  L
Sbjct: 462 KKINDTYGHATGDHALQLVARLCRETCRQADVVARWGGEEFAVLSRVQDAAQALAVAERL 521

Query: 200 RKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R  I  ++I +S G   +IT S G+  A  C    +  +  RAD+ LY AK++GR+R+  
Sbjct: 522 RCRIRETRIPVSGGDGFNITASFGVAFASACDSRDVDRLFRRADRLLYQAKEAGRDRI-- 579

Query: 258 FSD 260
           F+D
Sbjct: 580 FAD 582


>gi|46579353|ref|YP_010161.1| GGDEF domain-containing protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603088|ref|YP_967488.1| diguanylate cyclase [Desulfovibrio vulgaris DP4]
 gi|46448767|gb|AAS95420.1| GGDEF domain protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|120563317|gb|ABM29061.1| diguanylate cyclase [Desulfovibrio vulgaris DP4]
 gi|311233179|gb|ADP86033.1| diguanylate cyclase [Desulfovibrio vulgaris RCH1]
          Length = 243

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 59/194 (30%), Positives = 98/194 (50%), Gaps = 14/194 (7%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------- 123
            + IS+   L+   + G + +E      R+ +LS +D L+GL N  +F ++L        
Sbjct: 51  FLYISVGSILVFTGMGGWVGREEL----RLERLSLVDPLTGLYNRRSFETALEKEMARWR 106

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                ++++  D+D+FK +ND +GH  GD+V+  L+  L           R+GGEEFA  
Sbjct: 107 RREAPVALLMLDLDHFKLVNDTWGHQAGDRVLQTLARLLSSTVRIEDLPARVGGEEFAVI 166

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRAD 241
               +  EA   A  LR ++     +I    SI + +S G+A  E  +    +T++  AD
Sbjct: 167 MPEVTGDEAYQAAERLRLVVAGHLFDIGV-ESIEVRVSIGVACTEMQNVADGATLVRLAD 225

Query: 242 QALYVAKKSGRNRV 255
           +ALY AK+ GR+RV
Sbjct: 226 EALYRAKQRGRDRV 239


>gi|77361836|ref|YP_341411.1| GGDEF domain-containing protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876747|emb|CAI87969.1| conserved protein of unknown function ; putative GGDEF domain
           protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 621

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 60/179 (33%), Positives = 87/179 (48%), Gaps = 11/179 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL      + QL+  D L+G+ N   F   L             LS++  DID FK I
Sbjct: 434 LRELEEKNRELEQLNMEDPLTGIKNRRFFDKKLVMELRRSRREQTPLSVIMLDIDKFKVI 493

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD+VI   +D +      P   V R GGEEF      +    A  +A  +R 
Sbjct: 494 NDTYGHLTGDQVIRTAADTIKKQLQRPLDEVARYGGEEFVVLLPNTQNDGAIAIAEKIRH 553

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCF 258
            I  + +++ +G +I  TISAG+     ++         RAD+ALY AK+ GRN+V+ F
Sbjct: 554 AIATNNVHV-AGTTISFTISAGVYTSVAEDINNPEIFTERADKALYFAKQHGRNQVINF 611


>gi|71278809|ref|YP_269948.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71144549|gb|AAZ25022.1| sensory box/GGDEF/GAF/EAL domain protein [Colwellia psychrerythraea
           34H]
          Length = 1206

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 104/225 (46%), Gaps = 19/225 (8%)

Query: 58  FYGLEYILVENLSLVIISITIS-------LLLGYIS-GSILKELFISYNRISQLSRIDCL 109
           + G  +   +N  +  +  TIS       +   Y+S G+ +  +    N++  ++  D L
Sbjct: 717 WSGEVWNRRKNGEVYAVMQTISAVRDVHGIATHYVSLGNDITLMKEHQNQLEHIAHFDIL 776

Query: 110 SGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           + L N       L         + + L++VF D+D FK +ND  GH +GD+++  LS ++
Sbjct: 777 TNLPNRVLLADRLSQAMLQCSRHKQSLAVVFLDLDGFKHVNDTHGHDIGDELLIALSVRM 836

Query: 163 VVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                    + R+GG+EF A     ++ ++   +   L  ++  S+  I     ++I+ S
Sbjct: 837 KEALRENDSLARIGGDEFVAVLADLTTVEDCEPVLERL--LLAASEPVIFDNIVLNISAS 894

Query: 222 AGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            G+            ++  ADQA+YVAK+SG+NR   F   +++ 
Sbjct: 895 IGVTLYPQDNVGADLLMRHADQAMYVAKESGKNRYHLFDTAQDDA 939


>gi|302189850|ref|ZP_07266523.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 685

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 95/197 (48%), Gaps = 14/197 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +++L  +  S++++L   Y ++ + +  D L+GLLN      ++          ++ L +
Sbjct: 227 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 283

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQ 190
           +F D+D FKQIND  GH  GD+V+ ++++Q          + R+GG+EF     G    +
Sbjct: 284 LFMDLDGFKQINDALGHEAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 343

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           +AA +A  L + +   +     G  I +  S GIA        +  ++  AD A+Y AK+
Sbjct: 344 QAAKIAEKLIERVSGRRQ--VDGVDITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKR 401

Query: 250 SGRNRVVCFSDIENNTC 266
           +GR +   +    N   
Sbjct: 402 AGRQQYRFYDQNMNGRA 418


>gi|260577432|ref|ZP_05845396.1| diguanylate cyclase [Rhodobacter sp. SW2]
 gi|259020355|gb|EEW23687.1| diguanylate cyclase [Rhodobacter sp. SW2]
          Length = 551

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVG 151
            + +   +  D L+GL N    +  L    E+      +I+  D+D+FK  ND +GH  G
Sbjct: 354 RDELHHQATRDVLTGLFNRRYLMDRLHRRIERQADESFAIMSIDVDHFKAFNDAYGHEAG 413

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  L + L      P    R+GGEEF       ++ +A   A  LR  +    ++ +
Sbjct: 414 DEVLRVLGEMLSASCNAPEIACRMGGEEFILVLPNLAKDQAVERAEALRIAVNELCVHHA 473

Query: 212 SGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVC 257
                 I++S G+A        S  ++ +AD+ALY AK +GRN VV 
Sbjct: 474 GNTLPPISVSVGVALYSGIGDASLDVLRQADEALYAAKSAGRNHVVV 520


>gi|238753064|ref|ZP_04614518.1| Sensory box-containing diguanylate cyclase [Yersinia rohdei ATCC
           43380]
 gi|238708721|gb|EEQ00985.1| Sensory box-containing diguanylate cyclase [Yersinia rohdei ATCC
           43380]
          Length = 853

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 62/188 (32%), Positives = 86/188 (45%), Gaps = 11/188 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNH---SAFISS----LGSYNEKLSIVFFDIDY 138
           + S +     +  RI  LS  D L+GL N      F+ +    L   +  L I+  D+D 
Sbjct: 411 TASDITREIKAQERIQHLSLHDALTGLPNRLRMKQFLENKLLNLAGTSHPLVILNVDLDK 470

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK +ND FGH  GD V+  +S++L         V R GG+EF     G SS QE   L  
Sbjct: 471 FKPVNDTFGHVTGDLVLHQVSERLRGCLRDQDLVARQGGDEFILIITGLSSIQEIEQLCA 530

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            +   IE+    I +   I+I  S GIA           ++  AD A+Y AK SGRNR  
Sbjct: 531 RVIAQIES--PYIINEQDIYIGASIGIALAPQDSIHAEELLRFADIAMYEAKNSGRNRWS 588

Query: 257 CFSDIENN 264
            +S   N+
Sbjct: 589 FYSSEMND 596


>gi|119487037|ref|ZP_01620909.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]
 gi|119455966|gb|EAW37100.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]
          Length = 242

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 14/194 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFK 140
              +L++L      +  L+ +D L+ L N   F + L    EK     LS++  D+D+FK
Sbjct: 38  QNQMLQQLQSENKELKYLANLDELTRLANRRKFYAYLYEEWEKCSEQSLSVIICDVDFFK 97

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGT-----PMFVGRLGGEEFAAAALGSSEQEAAIL 195
             ND +GH  GD  +  +++ +              V R GGEEFA        ++A  +
Sbjct: 98  AYNDTYGHLAGDVTLKQIAEAIQKAVQEILDPNSFLVARYGGEEFAVILPQLETEQALEI 157

Query: 196 ANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGR 252
           A  +R  +   +I       S  +T+S G+A R  ++ +S   ++  AD++LY AK  GR
Sbjct: 158 AEQIRSHVAALKIPHKQSKVSSCVTLSLGVATRKPEDKLSPLELLMNADKSLYKAKSKGR 217

Query: 253 NRVVCFSDIENNTC 266
           NRVV +S +++ +C
Sbjct: 218 NRVV-YSYLQHRSC 230


>gi|126173574|ref|YP_001049723.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS155]
 gi|125996779|gb|ABN60854.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS155]
          Length = 1015

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + +   + + I + +  D L+GL N    +  L              +++F D+D+FK
Sbjct: 566 SDITDKKQNEHLIWKQANYDTLTGLPNRRMLLEYLSSEVKNADRNRNHFALLFLDLDFFK 625

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           ++ND  GH +GD ++   + +L         V RLGG+EF          +    +A ++
Sbjct: 626 EVNDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMEDHKGIERVAENI 685

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
            + I   +  +    + +I+ S GI         I  ++  ADQA+Y AK  GRNR   F
Sbjct: 686 LRRIA--EPYVLGEETAYISASIGITLYPDDSTSIEGLLKHADQAMYAAKDQGRNRFNYF 743

Query: 259 SDIENNTC 266
           +       
Sbjct: 744 TPSMQEYA 751


>gi|254491149|ref|ZP_05104330.1| NMT1/THI5 like family [Methylophaga thiooxidans DMS010]
 gi|224463662|gb|EEF79930.1| NMT1/THI5 like family [Methylophaga thiooxydans DMS010]
          Length = 1410

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 95/223 (42%), Gaps = 19/223 (8%)

Query: 58   FYGLEYILVENLSLVIISITISLL-------LGYI-SGSILKELFISYNRISQLSRIDCL 109
            + G  + L +N  L    +TIS L       L Y+   S + +     + +  ++  D L
Sbjct: 802  WQGEIWNLKKNGQLFAELLTISTLVDERGETLHYLGLFSDITQSKEQQHALELMAHYDML 861

Query: 110  SGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
            + L N + F              +  L++VF D+D FK +ND +GH VGD+++  ++ ++
Sbjct: 862  TQLPNRTLFADRFHQAIAHSKRNHSLLAVVFLDLDGFKPVNDRYGHDVGDQLLIEVAQRI 921

Query: 163  VVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITIS 221
                       RLGG+EF       S       L N +R  IE          +I ++ S
Sbjct: 922  KASIRQDDTASRLGGDEFVLLLNDISSVDHCERLINRIRHAIEL--PYQLDEDTISLSAS 979

Query: 222  AGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             GI           T++  ADQA+Y AK +GR R   F  + +
Sbjct: 980  LGITIYPLDDADADTLLRHADQAMYQAKLAGRQRHHIFDALHD 1022


>gi|89900556|ref|YP_523027.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Rhodoferax
           ferrireducens T118]
 gi|89345293|gb|ABD69496.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 716

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 82/179 (45%), Gaps = 11/179 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSA---FISS----LGSYNEKLSIVFFDIDYFKQINDNF 146
             +  RI  L+  D L+GL N      F+          +E+L++VF D+D FK IND  
Sbjct: 255 KETERRIEHLAHHDTLTGLPNRLHLQVFLEQSILIAKRMSEQLAVVFLDLDRFKTINDTL 314

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIEN 205
           GHPVGD ++  ++D+L         V RLGG+EF     G      A+ +A  +R  +  
Sbjct: 315 GHPVGDDLLIQVADRLKTSVRQYDMVARLGGDEFVMILRGHDMPSVASAVAEKIR--LHL 372

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +Q       ++    S GIA    + E +  ++  AD A+Y  K  G N    FS   N
Sbjct: 373 NQPFQIGQHTLRTATSIGIALYPGNGERMDDLMKHADTAMYFTKSEGGNGFCFFSSDMN 431


>gi|27381656|ref|NP_773185.1| hypothetical protein bll6545 [Bradyrhizobium japonicum USDA 110]
 gi|27354825|dbj|BAC51810.1| bll6545 [Bradyrhizobium japonicum USDA 110]
          Length = 892

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 9/179 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSY---NEKLSIVFFDIDYFKQINDN 145
           E   +   I++L+  D L+GL N       IS+          +++ F D+D+FK +ND 
Sbjct: 431 ERKEARAEIARLAYHDILTGLPNRAQLRHLISAAIDACPTGSHVALAFLDVDHFKDVNDT 490

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD+++  L+ +L    G    +GRLGG+EF         + A  +A  + + +  
Sbjct: 491 LGHAAGDELLIQLAQRLREQIGPEDILGRLGGDEFVVLLPHRDAEGAERVATGITEALAA 550

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                     + ++ S GI+    H   I T++ +AD A+Y+AK++GR+    FS   N
Sbjct: 551 --PLRLGSRQMQMSASIGISLYPDHATDIDTLMQQADAAMYMAKQAGRSTHRLFSAEMN 607


>gi|53715877|ref|YP_106612.1| GGDEF domain-containing protein [Burkholderia mallei ATCC 23344]
 gi|53723359|ref|YP_112344.1| hypothetical protein BPSS2342 [Burkholderia pseudomallei K96243]
 gi|67639151|ref|ZP_00438046.1| diguanylate cyclase [Burkholderia mallei GB8 horse 4]
 gi|76817799|ref|YP_336650.1| GGDEF domain-containing protein [Burkholderia pseudomallei 1710b]
 gi|121597761|ref|YP_990732.1| diguanylate cyclase [Burkholderia mallei SAVP1]
 gi|124381784|ref|YP_001025215.1| diguanylate cyclase [Burkholderia mallei NCTC 10229]
 gi|126442656|ref|YP_001064270.1| diguanylate cyclase [Burkholderia pseudomallei 668]
 gi|126446548|ref|YP_001079570.1| diguanylate cyclase [Burkholderia mallei NCTC 10247]
 gi|126456856|ref|YP_001077194.1| diguanylate cyclase [Burkholderia pseudomallei 1106a]
 gi|134281915|ref|ZP_01768622.1| diguanylate cyclase [Burkholderia pseudomallei 305]
 gi|166998968|ref|ZP_02264818.1| diguanylate cyclase [Burkholderia mallei PRL-20]
 gi|167721876|ref|ZP_02405112.1| diguanylate cyclase [Burkholderia pseudomallei DM98]
 gi|167744411|ref|ZP_02417185.1| diguanylate cyclase [Burkholderia pseudomallei 14]
 gi|167821605|ref|ZP_02453285.1| diguanylate cyclase [Burkholderia pseudomallei 91]
 gi|167829949|ref|ZP_02461420.1| diguanylate cyclase [Burkholderia pseudomallei 9]
 gi|167851402|ref|ZP_02476910.1| diguanylate cyclase [Burkholderia pseudomallei B7210]
 gi|167900048|ref|ZP_02487449.1| diguanylate cyclase [Burkholderia pseudomallei 7894]
 gi|167924550|ref|ZP_02511641.1| diguanylate cyclase [Burkholderia pseudomallei BCC215]
 gi|226199207|ref|ZP_03794767.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9]
 gi|242312012|ref|ZP_04811029.1| diguanylate cyclase [Burkholderia pseudomallei 1106b]
 gi|254177165|ref|ZP_04883821.1| diguanylate cyclase [Burkholderia mallei ATCC 10399]
 gi|254182411|ref|ZP_04889005.1| diguanylate cyclase [Burkholderia pseudomallei 1655]
 gi|254186964|ref|ZP_04893479.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237]
 gi|254192528|ref|ZP_04898967.1| diguanylate cyclase [Burkholderia pseudomallei S13]
 gi|254203631|ref|ZP_04909992.1| diguanylate cyclase [Burkholderia mallei FMH]
 gi|254205499|ref|ZP_04911852.1| diguanylate cyclase [Burkholderia mallei JHU]
 gi|254263051|ref|ZP_04953916.1| diguanylate cyclase [Burkholderia pseudomallei 1710a]
 gi|254356215|ref|ZP_04972492.1| diguanylate cyclase [Burkholderia mallei 2002721280]
 gi|52213773|emb|CAH39828.1| hypothetical protein BPSS2342 [Burkholderia pseudomallei K96243]
 gi|52421847|gb|AAU45417.1| GGDEF domain protein [Burkholderia mallei ATCC 23344]
 gi|76582272|gb|ABA51746.1| GGDEF domain protein [Burkholderia pseudomallei 1710b]
 gi|121225559|gb|ABM49090.1| diguanylate cyclase [Burkholderia mallei SAVP1]
 gi|126222147|gb|ABN85652.1| diguanylate cyclase [Burkholderia pseudomallei 668]
 gi|126230624|gb|ABN94037.1| diguanylate cyclase [Burkholderia pseudomallei 1106a]
 gi|126239402|gb|ABO02514.1| diguanylate cyclase [Burkholderia mallei NCTC 10247]
 gi|134246977|gb|EBA47064.1| diguanylate cyclase [Burkholderia pseudomallei 305]
 gi|147745870|gb|EDK52949.1| diguanylate cyclase [Burkholderia mallei FMH]
 gi|147755085|gb|EDK62149.1| diguanylate cyclase [Burkholderia mallei JHU]
 gi|148025198|gb|EDK83367.1| diguanylate cyclase [Burkholderia mallei 2002721280]
 gi|157934647|gb|EDO90317.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237]
 gi|160698205|gb|EDP88175.1| diguanylate cyclase [Burkholderia mallei ATCC 10399]
 gi|169649286|gb|EDS81979.1| diguanylate cyclase [Burkholderia pseudomallei S13]
 gi|184212946|gb|EDU09989.1| diguanylate cyclase [Burkholderia pseudomallei 1655]
 gi|225928614|gb|EEH24641.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9]
 gi|238519695|gb|EEP83163.1| diguanylate cyclase [Burkholderia mallei GB8 horse 4]
 gi|242135251|gb|EES21654.1| diguanylate cyclase [Burkholderia pseudomallei 1106b]
 gi|243064789|gb|EES46975.1| diguanylate cyclase [Burkholderia mallei PRL-20]
 gi|254214053|gb|EET03438.1| diguanylate cyclase [Burkholderia pseudomallei 1710a]
 gi|261826501|gb|ABM99648.2| diguanylate cyclase [Burkholderia mallei NCTC 10229]
          Length = 311

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 9/178 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           + +E   +  ++ + +  D L+G+ N   F + L         Y   LS++ FD+D+FK 
Sbjct: 134 MQREREEAVAKLQEYANRDGLTGIANRRFFEARLRDEFSRWQRYGGNLSVLLFDLDHFKT 193

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH VGD V+  ++ ++  V  +    GR GGEEFA     +S  EA ++A  +R+
Sbjct: 194 INDRFGHVVGDNVLRVMAQRVADVVRSQDTFGRFGGEEFALLLPCTSLDEAMLVAEKIRQ 253

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
            I ++ I  + G  + +T S G A          T++  AD ALY AK+ GRN  V F
Sbjct: 254 TIGSTPIE-AEGVRVPVTASVGGAAAHAGALTHETLVNEADAALYRAKRQGRNCSVAF 310


>gi|262193544|ref|YP_003264753.1| diguanylate cyclase [Haliangium ochraceum DSM 14365]
 gi|262076891|gb|ACY12860.1| diguanylate cyclase [Haliangium ochraceum DSM 14365]
          Length = 303

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 78/168 (46%), Gaps = 9/168 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y  I +++ ID L+G+ N   F+            +   L+++ FDID+FKQIND  GH 
Sbjct: 127 YEEIYRMTIIDGLTGVHNKRYFVEFLEREIARCARHQRPLTLLMFDIDHFKQINDTHGHL 186

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  +S +L         + R GGEEFAA    +           +R+++      
Sbjct: 187 TGDYVLKEMSRRLRERIRKEELLARYGGEEFAAVLPETDHVGGMTFGEQIRQLVGGEPFE 246

Query: 210 ISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              G    +TIS G+         +   I  AD  LY AK+SGRNRV+
Sbjct: 247 Y-EGDRFQVTISVGVHTLYGQSLDVKGFIKHADDNLYRAKRSGRNRVI 293


>gi|256375828|ref|YP_003099488.1| diguanylate cyclase [Actinosynnema mirum DSM 43827]
 gi|255920131|gb|ACU35642.1| diguanylate cyclase [Actinosynnema mirum DSM 43827]
          Length = 527

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 57/234 (24%), Positives = 111/234 (47%), Gaps = 14/234 (5%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           +++  + +    AT +F   + +     TP   LE  +   +  ++++  +  L+  +  
Sbjct: 288 LLHLLVPYLPMAATGLF---VVVGTATGTPLKPLEIYVGLGVVGLVVARQLLTLIDNV-- 342

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQIND 144
            ++++L  S  R+   +  D L+GL N + F   L +    +  ++++F D+D FK++ND
Sbjct: 343 RLVEQLRDSRERLRHQAYHDPLTGLPNRALFRERLAAALCADGPIALLFIDVDGFKEVND 402

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH  GD V+  ++ +L         V RLGG+EF     G +  +   +   + +++ 
Sbjct: 403 NYGHAEGDAVLRIVAQRLQRCVRECDTVARLGGDEFGVLIEGDAPPD--EVGRRVLRVLV 460

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVV 256
                      I    S GIA R H +P+    ++  AD A+Y AK+ G+  VV
Sbjct: 461 APHRTALGEHRIR--ASVGIARRAHGQPVAPDDLLGDADAAMYAAKRLGKGIVV 512


>gi|77919843|ref|YP_357658.1| response regulator/GGDEF domain-containing protein [Pelobacter
           carbinolicus DSM 2380]
 gi|77545926|gb|ABA89488.1| response regulator/FOG:GGDEF domain protein [Pelobacter
           carbinolicus DSM 2380]
          Length = 400

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 61/193 (31%), Positives = 94/193 (48%), Gaps = 10/193 (5%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFD 135
            Y     L+E+     +  +LS  D L+GL N   F S L           ++LS++  D
Sbjct: 208 SYRLYQALEEVDGQREKAERLSLQDPLTGLPNRRHFFSVLREALEPGHRDGQELSLMLID 267

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           IDYFK++ND  GH  GD+V+A ++  +           R GGEEFA    G+S Q    +
Sbjct: 268 IDYFKEVNDQLGHMAGDEVLAIVAHIIGDSVRQCDTACRYGGEEFAVLLPGASSQTVETI 327

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRN 253
              L + IE++ + ++    + +T+S G           I  +I RAD+ALY AK SGRN
Sbjct: 328 GRRLMEKIESADL-LAGRSEVSLTVSVGFVSLSPGSKISIEEVIGRADRALYEAKNSGRN 386

Query: 254 RVVCFSDIENNTC 266
           ++  +S   +  C
Sbjct: 387 QLRMWSSDSHGCC 399


>gi|83309858|ref|YP_420122.1| GGDEF domain-containing protein [Magnetospirillum magneticum AMB-1]
 gi|82944699|dbj|BAE49563.1| GGDEF domain [Magnetospirillum magneticum AMB-1]
          Length = 352

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 57/189 (30%), Positives = 97/189 (51%), Gaps = 9/189 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           S + +  L    + + + +  D L+ L N   F  SL        + +  LS++  DID+
Sbjct: 159 SSNEVARLRNHLDDLKREASTDALTQLANRKLFDHSLNLAVLDARAADAPLSLLMIDIDH 218

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ ND +GH +GD+V+  ++  L  V        R GGEEFA     +  +++  +A  
Sbjct: 219 FKQFNDTYGHQLGDQVLKLVARSLSEVAQAKDTAARYGGEEFAVILPATPLEKSMEVAET 278

Query: 199 LRKIIENSQI-NISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +R  +   ++ N  +G  +  +T+S G A     E   ++++RAD+A+Y+AK+ GRNRV 
Sbjct: 279 IRNQVSTKRLTNRRTGQVLGQVTLSIGAALLREAEAPDSLVHRADEAMYLAKRDGRNRVK 338

Query: 257 CFSDIENNT 265
              D+E  T
Sbjct: 339 SEIDLEKPT 347


>gi|110634093|ref|YP_674301.1| diguanylate cyclase [Mesorhizobium sp. BNC1]
 gi|110285077|gb|ABG63136.1| diguanylate cyclase [Chelativorans sp. BNC1]
          Length = 259

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 104/251 (41%), Gaps = 29/251 (11%)

Query: 35  FSIFIATVIFIANIFLFYIGLTP----------FYGLEYILVENLSLVIISITISLLLGY 84
           F +FI  V+          G+                 ++L+    L+  +I   L   Y
Sbjct: 10  FFVFIGLVLSAGVTLAGAYGVMSTSTHAALAKEIDEFAWLLLATGILLGAAIIFGLFFIY 69

Query: 85  --ISGSILKE---------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------N 126
             I   +  E         L      +   +  D L+G  N   F  +L  Y       +
Sbjct: 70  PIIRTQVKVEGKLRAMTETLSAWSESLEYAAFTDSLTGTYNRRYFDDALAEYLLEFGRIH 129

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           + + ++  D+D+FKQ+ND +GH +GD+V+  ++  L  +      V RLGGEEFA  A  
Sbjct: 130 KPVGLIILDLDHFKQVNDAYGHDIGDEVLRRVARCLQELTRHDDVVARLGGEEFAILAPN 189

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
             EQ  A L    R+ I    +N +    + I+ S G+A     E +     RAD+ LY 
Sbjct: 190 MDEQGLAKLGERARQAISALAVN-AGNIRLRISTSVGLAVWDGNESVEEFYRRADRMLYQ 248

Query: 247 AKKSGRNRVVC 257
           AK+ GRNRV  
Sbjct: 249 AKRMGRNRVCA 259


>gi|330988388|gb|EGH86491.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 796

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 88/175 (50%), Gaps = 10/175 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +L      +  LS  D L+G  N   F   +         +   LSI+  DID+FK
Sbjct: 620 SDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSIIMLDIDHFK 679

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +A  LA  LR
Sbjct: 680 RINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRGSQAYQLALSLR 739

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + + N  I    G    +T S GIA     E I T++ RAD  +Y AK++GR+RV
Sbjct: 740 EGLRNQVI---EGVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQAGRDRV 791


>gi|254786916|ref|YP_003074345.1| response regulator receiver domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237684302|gb|ACR11566.1| response regulator receiver domain protein [Teredinibacter turnerae
           T7901]
          Length = 428

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 95/209 (45%), Gaps = 13/209 (6%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G +  LV+ ++ VI+S  I  +   ++  +  EL      + QLS+ D L+GL N   F 
Sbjct: 96  GGDDYLVKPVNQVILSAKIRAMERILN--MRNELNRLNEELVQLSQRDSLTGLFNRRTFE 153

Query: 120 S-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMF 171
                         + ++++  DIDYFK  ND +GH  GD+ I  +++ L          
Sbjct: 154 EKSTEVWRHATRSQQPVTVILMDIDYFKLYNDEYGHQAGDRCIRMVANALHRCLNRPNDI 213

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAE--RC 228
           V R GGEEF A    +  + A  L   +R+ +E   I       S  +T+S G       
Sbjct: 214 VARYGGEEFIALLPNTPIEGAQHLTELIRETVEEMHIKHRGSKMSDRVTVSLGSTTTNFT 273

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVC 257
               ++ +I +AD+ALY AK  GRNR   
Sbjct: 274 TAIDLNRLISQADRALYEAKNDGRNRATV 302


>gi|229525824|ref|ZP_04415229.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|229339405|gb|EEO04422.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
          Length = 372

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 8/176 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L+    ++  LS  D L+GL N    +  L           +    V  DID FK +N
Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH VGDKV+  +++ L   F +   V RLGG+EF      ++      +A  + + I
Sbjct: 253 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETNTAGGVYIAEQVCRAI 312

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   I++ +      ++S G+A      +    ++  ADQA+Y+AK SG+NRV  F
Sbjct: 313 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHELLRAADQAVYLAKNSGKNRVCAF 368


>gi|77920093|ref|YP_357908.1| GGDEF domain-containing protein [Pelobacter carbinolicus DSM 2380]
 gi|77546176|gb|ABA89738.1| FOG: GGDEF domain containing protein [Pelobacter carbinolicus DSM
           2380]
          Length = 367

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 15/210 (7%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKE----LFISYNRISQLSRIDCLSGLLNHSA 117
           ++ +V   SLV +  +  ++  +   +I K     L  +   +S L+R+D L+ + N  A
Sbjct: 146 DFYMVSTASLVTLDGSPGIVGHFRDITIRKRAEAALEQANTALSHLARVDALTQIPNRRA 205

Query: 118 FIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
           F          L      LS+V  DID FK+ ND++GH  GDKV+  +++ L      P 
Sbjct: 206 FDEALQAEWGRLAREEGPLSLVLCDIDCFKKYNDHYGHQAGDKVLRRVAEALADCARRPA 265

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIAERC 228
               R GGEEFA     +  + A  +A   R+ +E+  +   +     I T+S G+A   
Sbjct: 266 DLASRYGGEEFALLLPQTPLEGALSVAEKARQAVEDLALQHPTSSVKPILTLSLGVASVI 325

Query: 229 HKEPIS--TIIYRADQALYVAKKSGRNRVV 256
               I+  T+I  AD+ALY AK + RNRVV
Sbjct: 326 PSLHIAPTTLIESADKALYQAKNADRNRVV 355


>gi|89093489|ref|ZP_01166437.1| GGDEF protein [Oceanospirillum sp. MED92]
 gi|89082179|gb|EAR61403.1| GGDEF protein [Oceanospirillum sp. MED92]
          Length = 385

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 108/242 (44%), Gaps = 13/242 (5%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL 81
           F P   M   ++F    +  V + A I +     T         VE ++ + +   + L+
Sbjct: 145 FFPFMIMTMMAVFPLSILEAVGYTAFILVIEYA-TQLVRGTAGSVEGINSLWLLGVLGLI 203

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
            G+ + + L  L   Y +    +  D L+GL N    +  L          ++ LS++ F
Sbjct: 204 AGWAAVNQLNMLLGLYRQ----ATRDPLTGLANRRQAMEQLSGDMKLMREKSKPLSVLLF 259

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAA 193
           D+D FK  ND +GH  GD V+   +  +          V R GGEEF     G   ++A 
Sbjct: 260 DLDKFKSFNDTYGHAAGDIVLQRFAKVMRKFARKRLDLVCRYGGEEFLMVLPGLDAEQAG 319

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +A  +R    + Q+   +G  I  T S G+AE   ++ I +++  +D ALY AK +GR+
Sbjct: 320 EVAEKIRLACYDEQVKTPTGERIGFTTSIGVAELKAEDTIDSLLQHSDDALYEAKGTGRD 379

Query: 254 RV 255
           +V
Sbjct: 380 KV 381


>gi|320325418|gb|EFW81483.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 305

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 112/225 (49%), Gaps = 10/225 (4%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
             ++ +    L P   L   + +  + + + +   + +G++S  +  +L+   N + ++S
Sbjct: 72  ALDVLISLALLNPAVNLHGNMAQIYACLPVLVIYPIFIGWMSHQVTLKLWEHRNILRKIS 131

Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           R D L+GLLNH A+   L        + +++  I   DID+FK IND +GH +GD V+  
Sbjct: 132 RTDSLTGLLNHGAWKDLLDLEYVKSQNQHQQCVIALIDIDHFKVINDTYGHLMGDTVLQN 191

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +S+ L+        +GR GG+EF      +   +A  +    R  I+    ++     + 
Sbjct: 192 ISEALMENLRDSDLIGRCGGDEFCVILPDTHLFQAREILERTRLAIDEMTYSLQ--RDLK 249

Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +++S GIA    +    S+ ++ AD+ALY+AK +GRN V    D+
Sbjct: 250 VSLSIGIAAYSPELPDASSWLHEADKALYLAKSTGRNCVASAQDM 294


>gi|298486599|ref|ZP_07004657.1| predicted CHASE domain/sensory box-containing nucleotide cyclase
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298158814|gb|EFH99876.1| predicted CHASE domain/sensory box-containing nucleotide cyclase
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 796

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 88/175 (50%), Gaps = 10/175 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +L      +  LS  D L+G  N   F   +         +   LSI+  DID+FK
Sbjct: 620 SDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSIIMLDIDHFK 679

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +A  LA  LR
Sbjct: 680 RINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRGSQAYQLALSLR 739

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + + N  I    G    +T S GIA     E I T++ RAD  +Y AK++GR+RV
Sbjct: 740 EGLRNQVI---EGVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQAGRDRV 791


>gi|119896856|ref|YP_932069.1| GGDEF/EAL/PAS/PAC/GAF-domain-containing protein [Azoarcus sp. BH72]
 gi|119669269|emb|CAL93182.1| GGDEF/EAL/PAS/PAC/GAF-domain containing protein [Azoarcus sp. BH72]
          Length = 1070

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 11/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E  +    + + ++ D L+GL N       L         +   L + F D+D+FK 
Sbjct: 629 DVTERVLYLRELERQAKYDGLTGLPNRYLLDDRLEQAIVAARRHERLLGVAFIDLDHFKV 688

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           +NDN GH  GD+++   + +L  V        R GG+EF         E++A  +   L+
Sbjct: 689 VNDNVGHRQGDELLRQAASRLAAVLRDGDTAARQGGDEFVVLLPDLGDERDAFRILGRLQ 748

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +   +       S  +T S G++          T++  AD A+Y AK +GRN V  F+
Sbjct: 749 AALA--EPFRLDDRSFFVTCSIGVSLYPRDGGDGDTLLKHADIAMYQAKAAGRNVVRFFT 806

Query: 260 DIEN 263
              N
Sbjct: 807 AEMN 810


>gi|258515904|ref|YP_003192126.1| diguanylate cyclase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779609|gb|ACV63503.1| diguanylate cyclase [Desulfotomaculum acetoxidans DSM 771]
          Length = 368

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 74/236 (31%), Positives = 121/236 (51%), Gaps = 13/236 (5%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           ++I +   IFI++I  FY+ LT    L  +L   L   I +I ++  + Y++   +K L 
Sbjct: 132 YAICVIYAIFISSI-AFYLVLTNNNVLVKVL---LYFSIGTIIVTYFMYYLTEFHIK-LN 186

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFG 147
             Y +    ++ D L+GL N   F   +          +  +S++F DID+FK+IND +G
Sbjct: 187 SLYRKFRSEAKQDFLTGLNNVRGFDEEINFLMNNSKQTSHVVSLLFIDIDFFKKINDTYG 246

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD ++  L+D L  +      V R GGEEF+         +A  +A  +R IIE   
Sbjct: 247 HIAGDAILIELADLLPKLCSYKDTVSRNGGEEFSIILRDCPLSKAIEVAERIRSIIEKYP 306

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             + +   I+IT+S G+A      + I+ +I +AD +LY AK++GRN+V    D E
Sbjct: 307 FKLLNNNIINITVSIGVANYPDTIDEINKLIEKADTSLYKAKRTGRNKVSIIQDDE 362


>gi|289208023|ref|YP_003460089.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
 gi|288943654|gb|ADC71353.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
          Length = 332

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 80/182 (43%), Gaps = 11/182 (6%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE---KLSIVF 133
           +L  +     ++L      +  L+  D L+GL N      A    L         L+ + 
Sbjct: 152 VLERMVRDRTQDLENVQRHLEHLATTDPLTGLHNRMKGNHALEDELERARRQSSPLATIM 211

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D+FK IND+ GH  GD V+  +   L           R GGEEF      ++  +A+
Sbjct: 212 VDLDHFKAINDHQGHAQGDHVLRAVGQLLHERLRETDTAARWGGEEFLILCPHTTAGQAS 271

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            LA  LR+ IE        G    +T S G+A     +    +I RAD+ALY AK++ RN
Sbjct: 272 SLAETLRQSIEQHDF----GTDPPLTASFGVAALEPGDTAEGLIARADRALYAAKRASRN 327

Query: 254 RV 255
            V
Sbjct: 328 CV 329


>gi|254457579|ref|ZP_05071007.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207086371|gb|EDZ63655.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 588

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 63/180 (35%), Positives = 83/180 (46%), Gaps = 13/180 (7%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           I  + + E       +  LS  D L+G+ N   F       I     Y   LS++ FDID
Sbjct: 414 IVLTDITEQENYKKELEHLSVTDALTGIGNRRYFHQKIEEEIHRAKRYQHPLSLIMFDID 473

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK +ND  GH VGD+V+   +  +  +        R+GGEEF      +   EA  +A 
Sbjct: 474 FFKHVNDKHGHSVGDEVLIEYTKLINSLLREGDVFCRIGGEEFIIILPHALRDEAQKIAE 533

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            LR  IE  Q        I IT+S G+ E    E I  I  R D ALY AK+SGRN VV 
Sbjct: 534 KLRAKIEFCQ------KVIPITMSFGVVEYIVGEEIEFIFKRVDDALYKAKESGRNIVVV 587


>gi|187926309|ref|YP_001892654.1| diguanylate cyclase with GAF sensor [Ralstonia pickettii 12J]
 gi|241665797|ref|YP_002984156.1| diguanylate cyclase [Ralstonia pickettii 12D]
 gi|187728063|gb|ACD29227.1| diguanylate cyclase with GAF sensor [Ralstonia pickettii 12J]
 gi|240867824|gb|ACS65484.1| diguanylate cyclase with GAF sensor [Ralstonia pickettii 12D]
          Length = 348

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 15/210 (7%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F   E  L+ +L+  + S      L     SIL EL I+       S  D + G+ N  A
Sbjct: 139 FDQAERELLNDLASWVESGFRERELSETQRSILTELQIA----RHESLTDPMLGIWNRRA 194

Query: 118 FISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
            +  L         Y + LS++  D+D+FK++ND +GHPVGD V+  ++  L V      
Sbjct: 195 AMELLTRECGHAMRYGQPLSLLVVDVDHFKRVNDTYGHPVGDAVLVEIARTLRVNSRPID 254

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            VGR GGEEF      ++  +A+ +A  LR  +E+ +I      +I  +IS G+A    +
Sbjct: 255 AVGRYGGEEFLVVLPDTTTLQASDIAERLRSAVESLEIATPE-ANIRSSISVGLASCEPE 313

Query: 231 EPI---STIIYRADQALYVAKKSGRNRVVC 257
           + +   + +I RAD AL  AK+ GRNRV+ 
Sbjct: 314 KNLCTPTDLIMRADAALLAAKRLGRNRVIF 343


>gi|261416036|ref|YP_003249719.1| diguanylate cyclase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261372492|gb|ACX75237.1| diguanylate cyclase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302325560|gb|ADL24761.1| diguanylate cyclase (GGDEF) domain protein [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 443

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 26/213 (12%)

Query: 69  LSLVIISITISLLLGYISGSI---------------LKELFISYNRISQLSRIDCLSGLL 113
           ++L  ++  I L++ +   S                L+ L I  +   + S+ D L+G L
Sbjct: 230 VALWFVTFLIILIIRFFDYSRERAINRKKQEELKKNLRALEIEKSEYEKSSKEDPLTGCL 289

Query: 114 NHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N + F          L      +S + FDID+FK++ND +GH VGD+V+  L+  +  + 
Sbjct: 290 NRAGFGGVLLREQEKLNRTGGPVSFMIFDIDHFKEVNDTYGHLVGDEVLVNLAKLVQGMI 349

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                + R GGEEF   +  +S Q AA LA  LRK IE++ +         +T S G+ E
Sbjct: 350 RNTDSLVRWGGEEFVILSDDTSIQNAAFLAEKLRKAIESATLITQQ----QVTCSFGVTE 405

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               E   + I RAD+ALY +K++GRNRV   +
Sbjct: 406 MIPGEDPKSFIARADKALYSSKENGRNRVTVAT 438


>gi|217974179|ref|YP_002358930.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella baltica OS223]
 gi|217499314|gb|ACK47507.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS223]
          Length = 1015

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + +   + + I + +  D L+GL N    +  L              +++F D+D+FK
Sbjct: 566 SDITDKKQNEHLIWKQANYDTLTGLPNRRMLLEYLSSEVKNADRNRNHFALLFLDLDFFK 625

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           ++ND  GH +GD ++   + +L         V RLGG+EF          +    +A ++
Sbjct: 626 EVNDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMEDHKGIERVAENI 685

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
            + I   +  +    + +I+ S GI         I  ++  ADQA+Y AK  GRNR   F
Sbjct: 686 LRRIA--EPYVLGEETAYISASIGITLYPDDSTSIEGLLKHADQAMYAAKDQGRNRFNYF 743

Query: 259 SDIENNTC 266
           +       
Sbjct: 744 TPSMQEYA 751


>gi|114763066|ref|ZP_01442496.1| two component diguanylate cyclase [Pelagibaca bermudensis HTCC2601]
 gi|114544390|gb|EAU47398.1| two component diguanylate cyclase [Roseovarius sp. HTCC2601]
          Length = 470

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 17/237 (7%)

Query: 47  NIFLFYIGLT--PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI---- 100
           N  L Y+G    P      + +    +++ ++    L   +   I ++      R     
Sbjct: 227 NAALLYVGRASRPRQAAAALDLGADDVLMGALDPDELALRLPRQIARKRNRDRQRANLRD 286

Query: 101 -SQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
            +Q + ID L+GL N           +      +   +++  D+D+FKQ+ND FGH  GD
Sbjct: 287 GAQAALIDPLTGLYNRRYALPHVARLLERATERSRGFALLLADLDHFKQVNDRFGHAAGD 346

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++ +L  +      V R+GGEEF      ++ + A  +A  LR  +   +  +  
Sbjct: 347 VVLREVARRLNSILRPSDLVARIGGEEFLVTLPDATAETAHAVAQRLRASVAARRFALPG 406

Query: 213 GPS-IHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            P+ + +T+S G+A            ++ RAD+ALY AK +GR+RV+ ++D  + TC
Sbjct: 407 TPTRLPVTLSIGLALSGSGAAPGADALLERADRALYAAKDAGRDRVMAWADPHDTTC 463


>gi|75908922|ref|YP_323218.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Anabaena variabilis ATCC 29413]
 gi|75702647|gb|ABA22323.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Anabaena variabilis ATCC 29413]
          Length = 585

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 12/189 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDI 136
           I+   + +  ++  R+   +  D L+GL N   FI  L           +   +++F D+
Sbjct: 129 INSRDITDRKLAEERLVHDALHDVLTGLPNRVLFIDRLRRAVEYAKRYSDHLFAVLFLDL 188

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAIL 195
           D FK IND+ GH +GD+++  ++ +L+          R GG+EF     G     +   +
Sbjct: 189 DRFKFINDSLGHTIGDQLLVIIAQRLIECLRPTDIAARFGGDEFIILLEGIQDISDTVRV 248

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
              +++ +        SG  I  T S GI+      E    ++  AD A+Y AK  G+  
Sbjct: 249 VERIQEKL--LVPVDLSGHEIFTTASIGISLSATGYEQPEDLLRNADIAMYRAKARGKAC 306

Query: 255 VVCFSDIEN 263
              F+   +
Sbjct: 307 YEIFNSDMH 315


>gi|89093534|ref|ZP_01166482.1| hypothetical protein MED92_18118 [Oceanospirillum sp. MED92]
 gi|89082224|gb|EAR61448.1| hypothetical protein MED92_18118 [Oceanospirillum sp. MED92]
          Length = 477

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 95/192 (49%), Gaps = 8/192 (4%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------- 122
           SL++ +I   L+   +   +L+ +      +  ++  D L+ LLN  AFI          
Sbjct: 283 SLIVTAIVCILVTLIVLALLLRVIRHYQAELEGIAWRDPLTSLLNRRAFIDRYAAIRNQH 342

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
               + LS++  DID+FK+IND +GH  GD V+  +S+ L         V R GG+EF  
Sbjct: 343 QRNGQPLSLLLVDIDHFKEINDRYGHNAGDLVLKGISEILTEAVRPSDLVTRWGGDEFLL 402

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
              G+    A  +A  +R  I + + ++++     +T+S G+AE+     +   +  AD 
Sbjct: 403 LLSGTDSDNARDIAERIRTRI-SLEPDLAAISEQRLTVSIGVAEQRDDFDLDRHVQEADS 461

Query: 243 ALYVAKKSGRNR 254
            LY AKK+GR+R
Sbjct: 462 GLYRAKKAGRDR 473


>gi|323948341|gb|EGB44328.1| diguanylate cyclase domain-containing protein [Escherichia coli
           H120]
          Length = 564

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQL 541

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 542 LADRRLYLAKQAGRNRVCA 560


>gi|323524751|ref|YP_004226904.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Burkholderia sp. CCGE1001]
 gi|323381753|gb|ADX53844.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1001]
          Length = 1036

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 87/187 (46%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + +L     ++   +  D L+ L N +     L         +++ +++VF D+D FK 
Sbjct: 588 DVTDLMRYQEQLEYQANYDSLTRLPNRNLLRDRLQHALIVAQRHHKGVAVVFMDLDGFKN 647

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDLR 200
           +ND+ GH VGD+++  ++++L     T   V R GG+EF      + ++++ I     +R
Sbjct: 648 VNDSLGHSVGDRLLGVVAERLARCTRTSDTVARHGGDEFVIVMTDTVDEQSLIAWMERVR 707

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +  S+     G  +++  S G +      +   T++ +AD A+Y AK  GRN    + 
Sbjct: 708 --VSISEPVWLDGTELYVGCSMGASLFPQDGDDAETLMKKADLAMYRAKDMGRNTFQFYQ 765

Query: 260 DIENNTC 266
              N + 
Sbjct: 766 PEMNASA 772


>gi|241765653|ref|ZP_04763605.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Acidovorax delafieldii 2AN]
 gi|241364500|gb|EER59589.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Acidovorax delafieldii 2AN]
          Length = 1624

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 83/192 (43%), Gaps = 16/192 (8%)

Query: 87   GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
             + ++E   +   I +L+  D L+GL N    +  +          ++  +++F D+D F
Sbjct: 1175 NTDIRERKATEREIQRLAFYDPLTGLPNRMLLMDRIGQALATAQRRHQGGALLFIDLDNF 1234

Query: 140  KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ------EAA 193
            K +ND  GH  GD ++  ++ +L     +   V RLGG+EF       S Q      +A 
Sbjct: 1235 KTLNDTLGHDQGDLLLQQVAHRLNNCVRSVDTVARLGGDEFVVMLEELSPQPDELALDAR 1294

Query: 194  ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGR 252
             +   +  ++         G     T S GIA     +  +  ++ +AD A+Y AK +GR
Sbjct: 1295 AVGEKVLAMLAV--PYALKGYQYRSTPSIGIAPFDGDQATVGELLKQADLAMYQAKTAGR 1352

Query: 253  NRVVCFSDIENN 264
            N +  F     +
Sbjct: 1353 NTLRFFDPAMQD 1364


>gi|116332510|ref|YP_802227.1| GGDEF family protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116127377|gb|ABJ77469.1| GGDEF family protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 535

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 103/206 (50%), Gaps = 14/206 (6%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
            EYI+    +L+   + +     +I   +  +L  S N++++L   D L+G+ N   F+ 
Sbjct: 326 FEYIIYIIKNLLPFWVLV--FTFFIVLILYVKLRSSMNQVAKLIHTDPLTGIWNRRGFLK 383

Query: 121 SLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                      + +  +I+  DID+FKQ+ND FGH  GDK +  ++  L         V 
Sbjct: 384 LTQRSLTIGNRHGKDWTILLVDIDHFKQVNDKFGHDTGDKTLIKVAQVLSRSIRQTDAVC 443

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEFA    G  ++ +  +A DLRK +EN Q+ +  G    +T+S G+++      +
Sbjct: 444 RWGGEEFAIFLFGVGQKASTDIAEDLRKEVEN-QVRLDDGN--PVTLSIGVSQ--GTLDL 498

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
                 ADQALY AK SGRNRV  F 
Sbjct: 499 EEAFVNADQALYRAKSSGRNRVCAFD 524


>gi|209919377|ref|YP_002293461.1| hypothetical protein ECSE_2186 [Escherichia coli SE11]
 gi|209912636|dbj|BAG77710.1| conserved hypothetical protein [Escherichia coli SE11]
          Length = 564

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 MCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 542 LADRRLYLAKQAGRNRV-FASD 562


>gi|150395798|ref|YP_001326265.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Sinorhizobium medicae WSM419]
 gi|150027313|gb|ABR59430.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Sinorhizobium medicae WSM419]
          Length = 772

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 12/181 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIV-FFDIDYFKQIND 144
           E   + +RIS L+  D L+GL N   F   +          ++ +++ F D+D FK IND
Sbjct: 332 ERKRAEDRISFLAHHDALTGLPNRVLFEEQVDGMLEEIRERDQCAVLAFLDLDNFKLIND 391

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL--ANDLRKI 202
           + GH  GD+++  ++ ++        FV R+GG+EF     G  ++   +L    D+R  
Sbjct: 392 SLGHAAGDELLKAVAGRMRASVRKADFVVRVGGDEFIILLNGLPKERDIVLSRLEDIRSA 451

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           I    + +  G S+ ++ S G+A           ++  AD A+Y AK+ GR+ +  F++ 
Sbjct: 452 IA-MPLQL-QGRSLQVSCSMGVACFPNQGRTAGELLANADMAMYRAKELGRDNIQVFTEE 509

Query: 262 E 262
            
Sbjct: 510 M 510


>gi|81301344|ref|YP_401552.1| diguanylate cyclase [Synechococcus elongatus PCC 7942]
 gi|81170225|gb|ABB58565.1| diguanylate cyclase (GGDEF domain) with PAS/PAC and GAF sensors
            [Synechococcus elongatus PCC 7942]
          Length = 1099

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 14/187 (7%)

Query: 85   ISGSILKELFIS------YNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSI 131
            ++ +I ++L ++         + Q +  D L+GL N                   + + I
Sbjct: 884  LAETIAEQLALAIANLQLRETLRQENLRDPLTGLFNRRYLQEFFEQELARAKRSGDSIGI 943

Query: 132  VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
            +  DIDYFK+ ND FGH  GD V+  ++  L+        V R GGEE A    G+S + 
Sbjct: 944  LMLDIDYFKRFNDEFGHDAGDMVLKQVARALLNQVRASDVVCRFGGEEIAILMPGASLEV 1003

Query: 192  AAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKS 250
            +A  A+ +R+ I    I+        +TIS G+A          T+I  AD +LY AK +
Sbjct: 1004 SARKADQIRQAIAQLIISYHEQTLPSLTISIGVAAFPESGLASDTLIKSADTSLYQAKAA 1063

Query: 251  GRNRVVC 257
            GRN VV 
Sbjct: 1064 GRNCVVV 1070


>gi|120597466|ref|YP_962040.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|120557559|gb|ABM23486.1| diguanylate cyclase [Shewanella sp. W3-18-1]
          Length = 324

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 77/273 (28%), Positives = 124/273 (45%), Gaps = 29/273 (10%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63
              D  + WL  ++ +ES     FM+    F S      +F       +    P  G   
Sbjct: 60  RFPDLPATWL--KQKMES----VFMLKNRAFISWEQRPYVFQ------FKNYRPITGRAD 107

Query: 64  ILVENLSLVIISIT------ISLLLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNH 115
            + +N++L+ ++        IS+++  ++   +   +L  +  ++ +LS+ D L+ L N 
Sbjct: 108 FMYQNVTLLPLASLTGKITHISVIVYDVTDIAVNKLQLKAANEQLERLSQTDGLTQLHNR 167

Query: 116 SAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
             +   L         YN+  S+V  DID FK IND +GH  GDKVI  ++  L      
Sbjct: 168 RHWQLCLEHEFDLYARYNDIPSLVMIDIDNFKYINDTYGHVAGDKVIQHIAHILSQSLRE 227

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
               GR GGEEFA     +S ++A      LR+ I  S I +     I +T+S G+ E  
Sbjct: 228 TDCAGRYGGEEFAVVMPKTSGEDALHFTERLREKIAESTI-VYESLKIKVTVSLGVCEIG 286

Query: 229 -HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            H    S+ I  +D+ALY AK+ GRN  V  ++
Sbjct: 287 KHISSSSSWISCSDKALYEAKQKGRNCSVLHTE 319


>gi|307730162|ref|YP_003907386.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1003]
 gi|307584697|gb|ADN58095.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1003]
          Length = 421

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 87/173 (50%), Gaps = 5/173 (2%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQIND 144
             + +       + + +  D L+GL N   F+  + +        S+   DID+FK+IND
Sbjct: 246 RDITDRARQMELLKEQATTDALTGLPNRRGFLQYIQTLLGDTDVFSVFILDIDFFKEIND 305

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+V+  L+     +   P    R GGEEF AA  G+  + A  +A+ LRK  E
Sbjct: 306 EHGHDAGDEVLRVLAKVGASMTSRPCLFARWGGEEFVAALPGADARRAYDIADALRKRYE 365

Query: 205 NSQI-NISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
                 +S    I  T+S G+  R  +E  +  ++ RAD+ALY AK++GRNRV
Sbjct: 366 RQDFAQVSRLEPIPFTVSIGVVTREAREADVDALMKRADRALYRAKRAGRNRV 418


>gi|206601963|gb|EDZ38445.1| Diguanylate cyclase [Leptospirillum sp. Group II '5-way CG']
          Length = 380

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 4/168 (2%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-LSIVFFDIDYFKQINDNFGHPVG 151
           L     ++S+ + ID L+G+LN       L    +  LS++ FD+D FK IND +GH  G
Sbjct: 209 LQKHNRKVSREANIDPLTGILNRRGLQHRLSFLKDPVLSLLIFDLDDFKAINDTYGHNAG 268

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++  +  +        R GG+EF          +A  +A  +R  I    + + 
Sbjct: 269 DEVLRKIAQGVRTLVRKVDLFSRFGGDEFIVVMPALEISQARFVAERIRSTIARMPVLLG 328

Query: 212 SGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +G S+ IT S G+        + +  ++  AD ALY AK  G+N++  
Sbjct: 329 TG-SVTITASFGLTGTYVDGAQKMDDLLELADSALYQAKSQGKNQICA 375


>gi|170756330|ref|YP_001779985.1| GGDEF/HD domain-containing protein [Clostridium botulinum B1 str.
           Okra]
 gi|169121542|gb|ACA45378.1| GGDEF/HD domain protein [Clostridium botulinum B1 str. Okra]
          Length = 567

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 79/273 (28%), Positives = 126/273 (46%), Gaps = 36/273 (13%)

Query: 28  MIYFSIFFSIFIATVIFIAN---IFLFYIGLTPFY-GLEY-ILVENLSLVIISIT----- 77
           ++   +FF + + T  + +    +FLF I +T    G++Y I++  L+  II I      
Sbjct: 91  IVLILLFFVVVLGTGTYASQYKFLFLFMIIITTIQSGMKYGIIIACLASFIILIMDIVCA 150

Query: 78  -----------------ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
                            + +L  +  G  +K       ++  L   D L+ + NH  F  
Sbjct: 151 PNLVVNEYFEQDLILAGVFILTAWPLGFYVKVENEHIEKLESLVNKDGLTDVYNHRFFHD 210

Query: 121 SL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           +L          NE LS++F DIDYFK  ND +GH  GD+V+  + + L         V 
Sbjct: 211 ALSKEVIECEEKNEALSMIFIDIDYFKHYNDLYGHQKGDQVLKTIGEILKNNTRKEDIVA 270

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERCHKEP 232
           R GGEEFA     +SEQ+A  +A  +RK IE +      + P+ ++T+S GI+   +K  
Sbjct: 271 RYGGEEFAVLLPNTSEQDAINIAEKIRKKIECTYFEGEENQPNGNLTVSMGISVYPYKAK 330

Query: 233 IS-TIIYRADQALYVAKKSGRNRVVCFSDIENN 264
               +I  AD ALY AK   +NRV  ++ I + 
Sbjct: 331 SDMELIKSADDALYRAKFFNKNRVEAYTSILDE 363


>gi|192289382|ref|YP_001989987.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
 gi|192283131|gb|ACE99511.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
          Length = 502

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 15/178 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           ++    +  R+ +L+  D L+GL N   F +++          N  ++++  D D+FK  
Sbjct: 320 IERRAAAERRLEELATTDPLTGLTNRRKFDAAIDTEWRRAIRQNTPIALLMIDADHFKAY 379

Query: 143 NDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND+FGH  GD+++  ++  +   V      V R GGEEFA    G +   A  +A  +R+
Sbjct: 380 NDSFGHQAGDQMLVGIAVCIADTVHRAGDCVARFGGEEFAVLLPGLTAPAAEAIAETIRR 439

Query: 202 IIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
            +E       S     +T+S G+A            ++  AD+ALY AK+ GRNR V 
Sbjct: 440 KVEE-----WSDIEGGVTVSIGVASTTPIAAHQWYDLVEAADRALYAAKELGRNRCVV 492


>gi|226942938|ref|YP_002798011.1| intracellular signalling protein [Azotobacter vinelandii DJ]
 gi|226717865|gb|ACO77036.1| intracellular signalling protein with diguanylate cyclase and
           phosphodiesterase activities [Azotobacter vinelandii DJ]
          Length = 802

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 8/177 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSG-LLNHSAFISSLGSY---NEKLSIVFFDIDYFKQIN 143
             + E   +  R+  L+  D L+  L N    +  L         LS++F DID+FK+IN
Sbjct: 358 RDISERLQAEQRLRFLAHFDPLTHHLANRHYLVQRLEQLLATRTPLSLLFLDIDHFKRIN 417

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH VGD ++  ++ +L  +    + V R GG+EF       + ++A  LA  L   +
Sbjct: 418 DTLGHEVGDHLLVEIARRLTRLVPDQVLVARSGGDEFLLLLARRAAEQARELAETL---L 474

Query: 204 ENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +  +  G     +T S GIA    +   + ++ +AD ALY AK +GRNR+  +S
Sbjct: 475 RDFKTPLQVGQYECFLTPSIGIANCDGQGDATDLLKQADLALYAAKDAGRNRLAVYS 531


>gi|315128100|ref|YP_004070103.1| GGDEF domain-containing protein [Pseudoalteromonas sp. SM9913]
 gi|315016613|gb|ADT69951.1| GGDEF domain-containing protein [Pseudoalteromonas sp. SM9913]
          Length = 619

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 63/179 (35%), Positives = 90/179 (50%), Gaps = 11/179 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL      + QL+  D L+G+ N   F   +             LSI+  DID FK I
Sbjct: 438 LRELEDKNRELEQLNMEDALTGVKNRRFFDKKIIMEIRRSRREQTPLSIIMLDIDKFKAI 497

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD+VI  + D +      P   V R GGEEF      ++ Q A  +A  +R 
Sbjct: 498 NDTYGHLTGDQVIRAVCDVIKQQLKRPLDEVARYGGEEFVVLLPNTNNQGALAIAEQIRC 557

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCF 258
            IE + +++ +G +I  TISAG+      +     T    AD+ALY+AK+ GRN+VV F
Sbjct: 558 AIEKNTVSV-AGTTIKYTISAGVYTHIADDVHNPETFTECADKALYLAKQHGRNQVVNF 615


>gi|262166424|ref|ZP_06034161.1| sensory box/GGDEF family protein [Vibrio mimicus VM223]
 gi|262026140|gb|EEY44808.1| sensory box/GGDEF family protein [Vibrio mimicus VM223]
          Length = 584

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 86/181 (47%), Gaps = 11/181 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +LS +D L+ + N   F   L           + LSI+  D+D+FK  N
Sbjct: 397 EQLEAANQELERLSFLDSLTQVANRRRFDEQLHTLWHLHAREGKPLSIILCDVDFFKDYN 456

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH +GD+ +  ++     V       V R GGEEF      + +  A ++A  + + 
Sbjct: 457 DAYGHLMGDETLKQVAIAFTQVANRQSDCVARYGGEEFGILLPNTPQSGAILIAERIHEK 516

Query: 203 IENSQINISSGP-SIHITISAG-IAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFS 259
           + +  I  +    +  IT+S G +    H E +   I+  ADQALY AK +GRN+   + 
Sbjct: 517 MRSLAIPHAHSKIADRITVSLGMVTHIPHPEDVPEQILALADQALYQAKANGRNQTSIYE 576

Query: 260 D 260
           D
Sbjct: 577 D 577


>gi|237798836|ref|ZP_04587297.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331021690|gb|EGI01747.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 757

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 68/268 (25%), Positives = 116/268 (43%), Gaps = 41/268 (15%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE-------------NLSLVIISITIS 79
           +F  +F   V  +    L  + L     L  ++ E              L L I  IT+ 
Sbjct: 185 MFHQMFRYGVSLLLGAGLLTMHLMGMRALRLVMPEGAPLHIPSTENSQQLGLTIAVITLL 244

Query: 80  LLLGYISGS------------------ILKELFISYNRISQLSRIDCLSGLLNHSAF--- 118
           ++ G IS +                  +L +L  +   + Q++  D L+ L+N   F   
Sbjct: 245 IIAGSISAAMADKKLQGKDHDLKRVNALLSQLDQARVSLQQVAHYDPLTNLINRRGFNQI 304

Query: 119 --ISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
                L   +    L+++F DID+FK+IND+ GH  GD+++  +++++         V R
Sbjct: 305 FAEKLLEHAHTSVLLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDVVAR 364

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
            GG+EF         +EA  LA+ +   +++  I + +G  + +T S GIA         
Sbjct: 365 FGGDEFCILLSVPDYEEARHLAHRVMHRMKD-PIGL-AGRRMVMTTSIGIAVFPRDGSSC 422

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDI 261
             ++  AD ALY +K +GRNRV  FS  
Sbjct: 423 DELLKHADLALYQSKGNGRNRVNFFSPA 450


>gi|257057649|ref|YP_003135481.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
           protein [Saccharomonospora viridis DSM 43017]
 gi|256587521|gb|ACU98654.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
           protein [Saccharomonospora viridis DSM 43017]
          Length = 919

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 10/183 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYF 139
           +S + + E      R+   +  D L+ L N +  +  L           + ++F D+D F
Sbjct: 479 VSFTDITERRAIGERLEHDATHDPLTNLANRTLILQRLEEMLRRSGGRPVCVLFIDLDKF 538

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILAND 198
           K IND+ GH +GD+V+    ++L         VGRLGG+EFA  A   +   +   L   
Sbjct: 539 KVINDSLGHGIGDEVLRIAGERLKNCVRQGDLVGRLGGDEFAIVASDMAHDSQIQALIGR 598

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256
           +R+ +  ++  +  G  + I  S G+      +      ++  AD A+Y AK  GR R  
Sbjct: 599 IRRAL--TEPVVVEGRRLRIDASIGVVTTHADDERSAEDLLRDADVAMYQAKTRGRGRYE 656

Query: 257 CFS 259
            F 
Sbjct: 657 FFD 659


>gi|291295452|ref|YP_003506850.1| diguanylate cyclase and serine/threonine protein kinase with TPR
           repeats [Meiothermus ruber DSM 1279]
 gi|290470411|gb|ADD27830.1| diguanylate cyclase and serine/threonine protein kinase with TPR
           repeats [Meiothermus ruber DSM 1279]
          Length = 609

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 81/177 (45%), Gaps = 8/177 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
             +L +L      + +L+R D L+ L N      +L         Y   +S+   DID+F
Sbjct: 431 SRLLDKLRQQSAELERLARQDPLTRLNNRRYLEENLEREFAAAKRYKFPISVALVDIDHF 490

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQIND F H VGD V+  +   L        F  R GGEEFA     +    A I    +
Sbjct: 491 KQINDTFSHQVGDDVLRIVGQILEASCRGVDFAARYGGEEFALVFPQTDLPGALIACERI 550

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R+ IE      +  P + +T+S G++          ++  AD+ LY AK++GRNRV 
Sbjct: 551 RQRIEQHNW-AALHPDLKVTVSIGVSSDPSLPNHEKLLAAADEQLYAAKRAGRNRVC 606


>gi|187920151|ref|YP_001889182.1| RNase II stability modulator [Burkholderia phytofirmans PsJN]
 gi|187718589|gb|ACD19812.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phytofirmans PsJN]
          Length = 689

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 11/187 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYF 139
           SG+ + E  ++  R++QL+  D L+GL N +A    + +        E + ++F D+D F
Sbjct: 242 SGTDITEERLAQERLTQLANTDSLTGLANRNAIQDKIRAAIEDAAPGEAVGVLFLDLDNF 301

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND++GH  GD++I  +S  +         + RLGG+EF   A   +  E    A  +
Sbjct: 302 KKVNDHYGHVFGDRLIRDVSSAISECLNEGDTLARLGGDEFIVLAAKGTAHELETTAQRI 361

Query: 200 RKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +E  +   + G   ++   S GIA    H + + ++I  AD A+YVAK  G+     
Sbjct: 362 ---LERMRTPFALGLVEVYTGCSIGIARYPEHGDSLESLIRSADTAMYVAKDEGKRTHRV 418

Query: 258 FSDIENN 264
           FS   N 
Sbjct: 419 FSPEMNR 425


>gi|116253698|ref|YP_769536.1| sensory box GGDEF/EAL domain-containing protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115258346|emb|CAK09448.1| putative sensory box GGDEF/EAL domain protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 717

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 9/184 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFK 140
              + E      +++ L+  D L+GL N +AF + +         +  +++++ D+D+FK
Sbjct: 272 SQDVTEERTVEAKLAHLAMHDSLTGLPNRAAFSNHINQRAVEATADSAIALLYIDVDHFK 331

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND+ GH  GD ++  +S++L+ +      V RLGG+EFA        + A   A  L 
Sbjct: 332 NINDSKGHAAGDALLCQVSERLLQLAEEGDLVARLGGDEFAVVLELDEPERAGRFAQRLL 391

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           K +  +      G   H+T S GIA    H      ++  AD ALY AK+SGR+    + 
Sbjct: 392 KALSRA--FDLDGAREHVTCSIGIALAPDHAGDADVLMRHADLALYAAKESGRSTYRFYE 449

Query: 260 DIEN 263
               
Sbjct: 450 TEMR 453


>gi|77461476|ref|YP_350983.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens
           Pf0-1]
 gi|77385479|gb|ABA76992.1| putative GGDEF/EAL domain regulatory protein [Pseudomonas
           fluorescens Pf0-1]
          Length = 707

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 94/196 (47%), Gaps = 13/196 (6%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           ++++  +  S+++ L   + ++   +  D L+GLLN   F  ++          +    +
Sbjct: 254 AMVVTVLDMSVVRHL---HQQLEFQAVTDPLTGLLNRRGFYQTVENLLLRGERTDSSWVL 310

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           ++ D+D FK++ND+ GH  GD+V+ ++S+QL         + R+GG+EF A       ++
Sbjct: 311 MYLDLDGFKRVNDSLGHDAGDRVLRWVSEQLKACLRPFDILARMGGDEFTALLDLEFPEQ 370

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKS 250
           AA +A  L + +   Q     G  I +  S GIA        +  ++  +D A+Y AK++
Sbjct: 371 AAKIAEKLIERVSICQQ--IEGLDIALGASIGIATYPDCGNNLDGLLRASDIAMYEAKRA 428

Query: 251 GRNRVVCFSDIENNTC 266
           GR +   +    N   
Sbjct: 429 GRQQYRFYDHEMNGRA 444


>gi|148547132|ref|YP_001267234.1| diguanylate cyclase [Pseudomonas putida F1]
 gi|148511190|gb|ABQ78050.1| diguanylate cyclase [Pseudomonas putida F1]
          Length = 469

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 63/249 (25%), Positives = 117/249 (46%), Gaps = 18/249 (7%)

Query: 24  PHTFMIYFSIFFSIFIATVIFI---ANIFLFYIGLTPFYGLEYILVENLSLVIISITISL 80
           P   +++ +  +S F+ +++ +   + + +        + +        +L+   + I++
Sbjct: 212 PIAALLWCAWTYSPFLVSLLTLTAGSTLIVAVAQNLMHFSVPQSEPGVTTLMSARLGIAM 271

Query: 81  LLG--YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---------KL 129
           L+    +   + +       R++  + +D L+G+L  SAF     +  E          L
Sbjct: 272 LVLGPLVVACVSQANRSLMARLAHQATVDHLTGVLTRSAFTRRANALLESRQQHAQALPL 331

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID+FK IND  GH VGD+V+   +  L         + RLGGEEF     G + 
Sbjct: 332 TLMMLDIDHFKSINDAHGHAVGDQVLRQFASTLQDQLHNDELIARLGGEEFVVILPGLAP 391

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYV 246
           + A  +A  LR+ I++  + + +   + IT+S G+A      P   +  ++  ADQALY 
Sbjct: 392 ERANFIAERLRRAIQDLHV-VQADQRLQITVSIGVAGCDADMPAPSLDELLASADQALYR 450

Query: 247 AKKSGRNRV 255
           AK  GRNRV
Sbjct: 451 AKARGRNRV 459


>gi|320334940|ref|YP_004171651.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
 gi|319756229|gb|ADV67986.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
          Length = 368

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 65/199 (32%), Positives = 96/199 (48%), Gaps = 12/199 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           L+ + SLV  +  + L +     S    L    + + Q + +D L+GL N  AF  SL  
Sbjct: 166 LLLHHSLVGGAFVMLLNIFTDIYSRQSSLERERDVLEQYAFVDALTGLHNRRAFEQSLAQ 225

Query: 125 Y-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                    + LSI+  DID+FK++ND FGH  GD V+  L+  +         V R GG
Sbjct: 226 EAERAQHNGQPLSIIALDIDHFKRVNDTFGHDAGDHVLKDLARIVRREVRATDVVARWGG 285

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EEF           A   A  +R+ ++  +   S+GP   +++S G+A     E    + 
Sbjct: 286 EEFILLLPTMDLPVAQACAERIRRAVDAHEF--STGP---LSVSLGVATLLRGEDTGALF 340

Query: 238 YRADQALYVAKKSGRNRVV 256
            RAD ALY AK++GRNRVV
Sbjct: 341 GRADAALYSAKRAGRNRVV 359


>gi|299132554|ref|ZP_07025749.1| diguanylate cyclase [Afipia sp. 1NLS2]
 gi|298592691|gb|EFI52891.1| diguanylate cyclase [Afipia sp. 1NLS2]
          Length = 407

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 119/271 (43%), Gaps = 42/271 (15%)

Query: 23  SPHTFMIYFSIFFSIF----------------------IATVIFIANIFLFYIGLTPFYG 60
           +P   +++ S+ F IF                      +AT++F+    +     TP   
Sbjct: 142 APEIGIVFLSVIFVIFASAGLRMTAREAATLWVLTGGCVATILFVLKTTIAVPLTTP--- 198

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILK-------ELFISYNRISQLSRIDCLSGLL 113
                +   SL + +I      G I  S+ +       EL  +Y +I +L+++D L+G+ 
Sbjct: 199 --AEWLAGTSLFVTTIGQCAYFGVIGNSVNRKLHQRTVELKAAYQQIEELAQLDELTGVR 256

Query: 114 NHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N           I+ +       S+   D+D+FK+IND FGHP GD+ +   +  +    
Sbjct: 257 NRRNILKCLSEEIARVQRTKASCSLAVIDLDFFKKINDQFGHPAGDEALRTFAIAIFANI 316

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                +GR GGEEF      +++ EA  + + LR II     +  S   + +T+SAGI  
Sbjct: 317 RAIDRLGRYGGEEFLLVLPDTAQDEAVRMLDRLRSIISEVDWSAIS-EDLRLTMSAGICS 375

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               +    I+ RAD ALY AK +GRN VV 
Sbjct: 376 IRPTDSTDEILSRADAALYQAKDAGRNCVVA 406


>gi|307728462|ref|YP_003905686.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1003]
 gi|307582997|gb|ADN56395.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1003]
          Length = 1036

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 86/187 (45%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + +L     ++   +  D L+ L N +     L          ++ +++VF D+D FK 
Sbjct: 588 DVTDLMRYQEQLEYQANYDSLTRLPNRNLLRDRLQHALIVAQRQHKGVAVVFMDLDGFKN 647

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDLR 200
           +ND+ GH VGD+++  ++++L     T   V R GG+EF      + ++++ I     +R
Sbjct: 648 VNDSLGHSVGDRLLGVVAERLARCTRTSDTVARHGGDEFVIVMTDTVDEQSLIAWMERVR 707

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +  S+     G  +++  S G +      +   T++ +AD A+Y AK  GRN    + 
Sbjct: 708 ASV--SEPVWLDGTELYVGCSMGASLFPQDGDDAETLMKKADLAMYRAKDMGRNTFQFYQ 765

Query: 260 DIENNTC 266
              N + 
Sbjct: 766 PEMNASA 772


>gi|172039089|ref|YP_001805590.1| hypothetical protein cce_4176 [Cyanothece sp. ATCC 51142]
 gi|171700543|gb|ACB53524.1| hypothetical protein cce_4176 [Cyanothece sp. ATCC 51142]
          Length = 699

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            +     +   +   +  D L+ L N + F   L          N  ++++F D+D FK 
Sbjct: 259 DITARKQAEKNLEYRAFYDTLTDLPNRNYFDEKLEIALVKAKQNNHLMALLFLDLDSFKN 318

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND  GH +GD+++   + +L         V R GG+EF        + ++   LA  + 
Sbjct: 319 VNDTLGHKIGDQLLKSFARRLSSCVRNNDVVSRWGGDEFTLLLPQINTPEDTINLAQRIL 378

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++  Q    SG  ++I  S GIA      E   T++  AD ALY AK+ G+N    + 
Sbjct: 379 DDLK--QPFEVSGHQLYIKTSIGIAIYPQDGEDTETLLKNADAALYRAKERGKNHYRFYR 436

Query: 260 DIENNTC 266
               +  
Sbjct: 437 STMTSKA 443


>gi|160874481|ref|YP_001553797.1| PAS/PAC and GAF sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|160860003|gb|ABX48537.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS195]
 gi|315266718|gb|ADT93571.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS678]
          Length = 1015

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + +   + + I + +  D L+GL N    +  L              +++F D+D+FK
Sbjct: 566 SDITDKKQNEHLIWKQANYDTLTGLPNRRMLLEYLSSEVKNADRNRNHFALLFLDLDFFK 625

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           ++ND  GH +GD ++   + +L         V RLGG+EF          +    +A ++
Sbjct: 626 EVNDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMEDHKGIERVAENI 685

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
            + I   +  +    + +I+ S GI         I  ++  ADQA+Y AK  GRNR   F
Sbjct: 686 LRRIA--EPYVLGEETAYISASIGITLYPDDSTSIEGLLKHADQAMYAAKDQGRNRFNYF 743

Query: 259 SDIENNTC 266
           +       
Sbjct: 744 TPSMQEYA 751


>gi|27367989|ref|NP_763516.1| GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|320158262|ref|YP_004190640.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
 gi|27359562|gb|AAO08506.1|AE016813_258 GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|319933574|gb|ADV88437.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
          Length = 338

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 62/172 (36%), Positives = 90/172 (52%), Gaps = 5/172 (2%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNF 146
           +  L      + + +  D LS L N  AF S L +     + LS++  DID+FK  NDN+
Sbjct: 165 ISRLKEQLAEVQRDALFDGLSTLYNRRAFDSDLKALVNAQQNLSLILLDIDHFKTFNDNY 224

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD VI  ++ +L       +   R GGEEFA      S + A   A  LR+ IE  
Sbjct: 225 GHLFGDSVIRAIAKRLQTSCREGIAAYRFGGEEFALIVPNKSLRIARQYAESLRRTIEKL 284

Query: 207 QI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++ +  SG  + +I+ S G+AE    E   ++I RAD+ LY AK+ GRNRV+
Sbjct: 285 KVKDKRSGQQVENISASFGVAELKPDETAESLIERADKLLYEAKQLGRNRVM 336


>gi|89074248|ref|ZP_01160738.1| hypothetical sensory box/GGDEF family protein [Photobacterium sp.
           SKA34]
 gi|89049952|gb|EAR55486.1| hypothetical sensory box/GGDEF family protein [Photobacterium sp.
           SKA34]
          Length = 339

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 104/222 (46%), Gaps = 17/222 (7%)

Query: 52  YIGLTPFYGLEYILVENLSLVII-SIT-----ISLLLGYIS--GSILKELFISYNRISQL 103
           +   +P  G    + +N++L  + S+T     I L +  ++        L  S  +++ L
Sbjct: 94  FSNFSPISGGADFMYQNMTLTPLKSLTGEYTHICLTITDVTDIAKNKNHLRESNEQLTHL 153

Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S  D L+ L N   + + L          ++ +++V FDID+FK++ND +GH  GD VI 
Sbjct: 154 SITDRLTQLYNRGHWENCLVEEFEHYQQMHQPMTLVMFDIDHFKKVNDTYGHVAGDTVIK 213

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++D +          GR GGEEF     G++    +     LRK +E   + +  G +I
Sbjct: 214 TMADIVRKAKRQSDIAGRYGGEEFGVILPGTTADMTSYFTERLRKKVEKENV-VVDGKTI 272

Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++TIS G+ +         + I + D ALY +K  GRN+   
Sbjct: 273 NVTISLGVCQLHPGITSYESWIEQTDSALYESKNKGRNQTTI 314


>gi|75762353|ref|ZP_00742230.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74490163|gb|EAO53502.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 386

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ +D L+ + N   F   L          +EK++I+ FDID FK +
Sbjct: 210 ITELDEIYQEQERLAMVDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTV 269

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 270 NDTYGHDFGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 329

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q    S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 330 IETKQFTGIS----KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 381


>gi|118578561|ref|YP_899811.1| response regulator receiver modulated diguanylate cyclase
           [Pelobacter propionicus DSM 2379]
 gi|118501271|gb|ABK97753.1| response regulator receiver modulated diguanylate cyclase
           [Pelobacter propionicus DSM 2379]
          Length = 304

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 8/169 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNF 146
            ++   +   +R D L+G+ N   FI+           +   LSI+  DID+FK +ND F
Sbjct: 132 LLAEEALQCAARTDHLTGIANRWEFINRFNTEKGRAERHGTPLSIIIADIDHFKSVNDTF 191

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+V+  +++ +          GR GGEEF      ++   AA +A  LR+ +   
Sbjct: 192 GHNAGDRVLRSVANAISSSIRVEDACGRWGGEEFMLLLPDTNLDAAARVAEKLRQAVSEL 251

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I    G SI +T+S G+ +      +   I   D ALY AK  GRNRV
Sbjct: 252 SIPW-EGESIAVTLSMGVGQFRPGMTLDECIQPVDHALYRAKTGGRNRV 299


>gi|94312478|ref|YP_585688.1| diguanylate cyclase [Cupriavidus metallidurans CH34]
 gi|93356330|gb|ABF10419.1| conserved hypothetical protein (contains GGDEF domain) [Cupriavidus
           metallidurans CH34]
          Length = 587

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 24/222 (10%)

Query: 59  YGLEYILVENLSLVIISITISL-LLGYISGSILKELFISY----NRISQLSRIDCLSGLL 113
           Y +   +   LSL +++I   L +L Y++  ++  LF  Y     ++ Q++  D L+ L 
Sbjct: 348 YDVYATVARRLSLPLLTIWFLLPVLMYVTLRVVTLLFDHYLAAGRKLQQMAETDPLTQLA 407

Query: 114 NHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N   F                 L+++  DIDYFK++ND +GH  GD V+  ++D +    
Sbjct: 408 NRRRFSEQFKKETARRQRDGTPLAMLMLDIDYFKRVNDKWGHASGDCVLMAMADLMRKHL 467

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII---------ENSQINISSGPSIH 217
               F  RLGGEEFA    G+S  EA   A  LR  +         +  Q +   G  I 
Sbjct: 468 REIDFPARLGGEEFAVLLPGASSDEAVAAAERLRLAVEAAFVEAAPDAPQPDTGDG-RIR 526

Query: 218 ITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
            T+S G+AE      + +  ++  AD+ LYVAK++GRNRV  
Sbjct: 527 FTVSIGVAEAGTDGCQTLDAMLAVADRRLYVAKEAGRNRVCA 568


>gi|304310934|ref|YP_003810532.1| hypothetical protein HDN1F_12960 [gamma proteobacterium HdN1]
 gi|301796667|emb|CBL44879.1| hypothetical protein HDN1F_12960 [gamma proteobacterium HdN1]
          Length = 363

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 79/255 (30%), Positives = 113/255 (44%), Gaps = 28/255 (10%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYG----LEYILVENLSLVII----------SITIS 79
           F ++ IA  IF A      I L P +     L Y LV ++ + I           S+  S
Sbjct: 99  FRAVLIAGAIFSAG---SCIVLVPAFFRSDLLAYFLVLDVGVAIFCSANAYAYEFSLRKS 155

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIV 132
            L   +      +L  +  R+  LS +D L+G+ N                    +LS +
Sbjct: 156 FLQQVLIAHNNAQLAEANTRLKVLSEVDSLTGIYNRRFLDNAMDEEWRRARRMGYRLSFL 215

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQE 191
             DID+FK  ND +GH VGD+ I  ++ +L  +       V R GGEEFA    G    E
Sbjct: 216 MCDIDFFKLYNDTYGHLVGDQCIRKVAQRLQSLFHRPGDVVARYGGEEFAVLLPGLEASE 275

Query: 192 AAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPIST--IIYRADQALYVAK 248
           A  LA  +   I+   I  S+      +TIS G+A+    E   T  +   AD+ LY+AK
Sbjct: 276 AHALAKVVCAEIQALAIPHSTSTVADVVTISIGVADILPNEESETRDLCRMADEGLYLAK 335

Query: 249 KSGRNRVVCFSDIEN 263
           +SGRNR  CF D E+
Sbjct: 336 RSGRNRAECFGDAES 350


>gi|239995986|ref|ZP_04716510.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Alteromonas macleodii ATCC 27126]
          Length = 353

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 73/250 (29%), Positives = 114/250 (45%), Gaps = 25/250 (10%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTP------FYGLEYILVE----NLSLVIISITI 78
           +YF IF  +FI  V+      + Y+ +T        Y  E I+ E    ++S  +I+   
Sbjct: 106 LYF-IFPLLFIQIVVVRFKPAMVYVAVTMGIAIFMLYNQEKIVAEYPAEHVSRFLIATFC 164

Query: 79  SLLLGYI-----SGSILKELFISYNRISQLSRIDCLSGLLNHSA----FISSLGS---YN 126
            + + +I       S  + L  +  R+ Q +  D L+ L N       F          +
Sbjct: 165 FICVAFIGENFWHQSRKEMLRENLERMRQ-ANTDPLTKLPNRRFLEAVFFERAMQDPGAH 223

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             LS V  DID+FK IND +GH +GD+V+  ++  +     T   V R GGEEF      
Sbjct: 224 FPLSAVVVDIDHFKTINDTYGHDIGDEVLIHITRLMKEAVRTTDVVARTGGEEFLVLFPH 283

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
           ++  +A  LA  +RK+IE +   +    +  IT S G+A       +   + +AD  LY 
Sbjct: 284 ATLSQAVKLAEKMRKVIEANPF-VEGDVNHSITASFGVATALTDTNLHACLKQADDNLYK 342

Query: 247 AKKSGRNRVV 256
           AK +GRNRVV
Sbjct: 343 AKNAGRNRVV 352


>gi|207728385|ref|YP_002256779.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           MolK2]
 gi|206591631|emb|CAQ57243.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           MolK2]
          Length = 507

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 21/243 (8%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           + +++A      +I+  +       GL         LV +   +++ L Y     L++  
Sbjct: 264 YPLYVAVGAATEDIYANWTSRAWAIGL---------LVAVFNLVTMALAYQFAKQLEKRL 314

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFG 147
            +  R ++L+  D L+GL N  A  + L    +        +S++  D+D FK  ND++G
Sbjct: 315 AAGRRHAELAVTDALTGLPNRRALDAGLDREWKRALRERWPVSVLMIDVDAFKPYNDHYG 374

Query: 148 HPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  GD  +  ++  +            R GGEEF      +    A  +A  +R+ +   
Sbjct: 375 HLGGDTALKAVARCIQAKACRPGDLAARYGGEEFCIVLPHTDLAGAVAVAEHIRQAVLAL 434

Query: 207 QINISSGPSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRVV-CFSDIE 262
            I  + GP+  +++S G+A        +   ++   AD  LY AK  GRNR +    + E
Sbjct: 435 HIPHAQGPAGILSVSIGVASGMPALSADRPESLTQAADTELYRAKTQGRNRTMPVLPEAE 494

Query: 263 NNT 265
           N+ 
Sbjct: 495 NDA 497


>gi|149374977|ref|ZP_01892750.1| Putative diguanylate cyclase (GGDEF domain) [Marinobacter algicola
           DG893]
 gi|149360866|gb|EDM49317.1| Putative diguanylate cyclase (GGDEF domain) [Marinobacter algicola
           DG893]
          Length = 309

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 8/171 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I Q S  DCL+G+ N  A   +L         + E+ S++  D+D+FKQ+ND +GH VGD
Sbjct: 140 IEQASLTDCLTGVPNKRALDDALSRASCLGDRHGEEYSLILCDLDHFKQVNDQYGHVVGD 199

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++   + +L         V R GGEEFA     + E  A  + + +R+ I    ++   
Sbjct: 200 HMLKLAAAELEKAVRNSDSVYRFGGEEFAILLAHTDEVNAREVGDRIREFISTIVVDCGD 259

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             ++ +T S G+A R   E     + RAD+ALY AK  GRN    F+ I N
Sbjct: 260 -TNVTVTASCGVAMRLADETADQWLARADEALYRAKAHGRNCTRVFAAISN 309


>gi|74317057|ref|YP_314797.1| response regulator receiver modulated diguanylate cyclase
           [Thiobacillus denitrificans ATCC 25259]
 gi|74056552|gb|AAZ96992.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 393

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 86/178 (48%), Gaps = 8/178 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYF 139
            +I+K     Y  + +    D L+GLLNHS         +S +      LS+V  DID+F
Sbjct: 209 NTIVKSKIERYRALRRSMYHDSLTGLLNHSSGKNTLDMVLSGIAHEEGTLSVVMIDIDHF 268

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQIND++GHP GD+VI  LS  L         + R GGEEF      +   +A  +   +
Sbjct: 269 KQINDSYGHPTGDQVIRSLSWLLKQRLRKHDILCRYGGEEFLVGLPHTDAGQALAILERV 328

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R+     +           ++SAG+A   H++    +I  AD+ALY AK  GRNRV  
Sbjct: 329 RQDFAQIRHPYRDTH-FSASVSAGVASYPHQQSGDALIKAADEALYQAKHRGRNRVHI 385


>gi|289675078|ref|ZP_06495968.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 367

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 86/175 (49%), Gaps = 10/175 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +L      +  LS  D L+G  N   F   +         +   LSI+  DID+FK
Sbjct: 191 SDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSIIMLDIDHFK 250

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +A  LA  LR
Sbjct: 251 RINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRGAQAYQLALSLR 310

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              E  +  +  G    +T S GIA     E I  ++ RAD  +Y AK++GR+RV
Sbjct: 311 ---EELRKQVIEGVDQVVTGSFGIASWREGEGIDAMLLRADSGVYAAKQAGRDRV 362


>gi|258620242|ref|ZP_05715281.1| GGDEF family protein [Vibrio mimicus VM573]
 gi|258587600|gb|EEW12310.1| GGDEF family protein [Vibrio mimicus VM573]
          Length = 411

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 9/177 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           K+L+ +  ++  LS  D L+GL N    +  L           +    V  D+D FK++N
Sbjct: 233 KQLYQANRQLEALSLTDSLTGLPNRRKAMHQLALHWNLAREQKKPFVCVMIDVDGFKEVN 292

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D++GH +GDKV+  ++  L   F     V RLGG+EF A    +       +A  +   +
Sbjct: 293 DSYGHDIGDKVLTIIAHALKDHFRNDDLVCRLGGDEFLAICPNTDAVSGVHIAEHVCDEV 352

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           E  +I +  G     ++S G+AE     +    ++  ADQA+Y+AK +G+NRV  F+
Sbjct: 353 ELLEIPV-EGIHWQGSVSMGVAEFDPNMKDHHELLRAADQAVYLAKNNGKNRVCAFN 408


>gi|257486238|ref|ZP_05640279.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 796

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 88/175 (50%), Gaps = 10/175 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +L      +  LS  D L+G  N   F   +         +   LSI+  DID+FK
Sbjct: 620 SDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSIIMLDIDHFK 679

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +A  LA  LR
Sbjct: 680 RINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRGSQAYQLALSLR 739

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + + N  I    G    +T S GIA     E I T++ RAD  +Y AK++GR+RV
Sbjct: 740 EGLRNQVI---EGVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQAGRDRV 791


>gi|291296842|ref|YP_003508240.1| diguanylate cyclase [Meiothermus ruber DSM 1279]
 gi|290471801|gb|ADD29220.1| diguanylate cyclase [Meiothermus ruber DSM 1279]
          Length = 351

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 61/180 (33%), Positives = 91/180 (50%), Gaps = 10/180 (5%)

Query: 82  LGYISGSILKELFISYNRISQ---LSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFD 135
           L Y    +  +L ++  ++ +   L+R D L+GL N  A    +     +   L +V  D
Sbjct: 171 LLYALAIVKDQLALANRQVEEMHALARTDPLTGLPNRLALSELLEEASQHMHGLYLVLLD 230

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID FKQIND FGH  GD+V+  ++ +L V       +GR GGEEF     G S+Q+    
Sbjct: 231 IDRFKQINDRFGHAAGDEVLREVARRLRVSMRKEDVLGRWGGEEFMILMRGESQQDVPAA 290

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              LR+ I      +       ++ S G+AE    + I  ++ RAD+ALY AK+ GRNRV
Sbjct: 291 VERLREDIAFWPFKLVG----PVSASFGVAEGHIGDSIHALVERADRALYEAKRLGRNRV 346


>gi|196019114|ref|XP_002118927.1| hypothetical protein TRIADDRAFT_62909 [Trichoplax adhaerens]
 gi|190577679|gb|EDV18587.1| hypothetical protein TRIADDRAFT_62909 [Trichoplax adhaerens]
          Length = 455

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 72/255 (28%), Positives = 109/255 (42%), Gaps = 14/255 (5%)

Query: 15  HEKNLESFSPHTFMIYFSIFFSIFIATVIF--IANIFLFYIGLTPFYGLEYILVENLSLV 72
           +   L  +      ++F+ F    IA + +  ++ I LF      F    Y       L+
Sbjct: 107 NTGPLWIYLVPPVTMFFAGFVRGLIALIAYTLVSAIVLFAFNDASFVA-NYTYAFKTRLL 165

Query: 73  IISITISLLLGYISGSILKELFISY---NRISQLSRIDCLSGLLNHSAFISSLGSY---- 125
              +T+S L  +   S  K    +     +  + ++ D L+ LLN       L       
Sbjct: 166 YSFLTVSFLSAFYEYSRQKSYDTALYLSEQFERQAKHDHLTQLLNRRGAQQCLEREYARM 225

Query: 126 ---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                K S+   DID FK IND  GH  GD+V+  +S            + R GGEEF  
Sbjct: 226 LRSKRKFSVAIADIDRFKSINDTLGHEQGDEVLRQISKVFSSRLRGQDILARWGGEEFMF 285

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
               + E  A     ++R I+ N+ +NI +G  IH+T S G++E      IS  + RADQ
Sbjct: 286 IFTDTDEAGAVNALENIRDILNNAPLNI-NGSEIHVTSSFGVSEVNPDIDISCAVRRADQ 344

Query: 243 ALYVAKKSGRNRVVC 257
           ALY AK +GR+ V  
Sbjct: 345 ALYYAKDNGRDCVYI 359


>gi|95928328|ref|ZP_01311076.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95135599|gb|EAT17250.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 481

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 11/205 (5%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFIS--YNRISQLSRIDCLSGLLNHSAFI 119
           E +L +    ++I++ I   + +I   IL ++ I+    R+ +++  D L+ + N  A  
Sbjct: 275 EPMLRQIRLTLLINVAICFTVTFIV-IILTQMTINRYQKRLEEMALTDKLTRIANRQAID 333

Query: 120 SSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L         +    S++ FD+D FKQIND  GH  GD V+  +++ +         V
Sbjct: 334 LHLQQLFKEQQRHQVPFSVILFDLDNFKQINDTHGHIAGDAVLQNIANIVTTELRDCDVV 393

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232
           GR GGEEF          +A   A  +R  I++  I      +++ T S G+ E   ++ 
Sbjct: 394 GRWGGEEFLVLLKHCQLDDALKRAESIRLAIQSYAIGFEE-QTLYTTASFGVVEYRDQDD 452

Query: 233 ISTIIYRADQALYVAKKSGRNRVVC 257
            +T++ RADQALY+AK++G+NR   
Sbjct: 453 HNTLLKRADQALYIAKQNGKNRCEV 477


>gi|296100762|ref|YP_003610908.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295055221|gb|ADF59959.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 415

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 64/185 (34%), Positives = 97/185 (52%), Gaps = 12/185 (6%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHS---AFISSL----GSYNEKLSIV 132
           +  Y+S G  + E       + + + +D L+GL N +   A +S       S  E +S++
Sbjct: 234 ITNYVSVGKDVTERLREEQALRESATVDQLTGLFNRNHGKALLSEAYSFTLSREEPMSLI 293

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FKQIND+FGHPVGD+++A +S  L         V R GGEEF       ++  A
Sbjct: 294 LCDIDHFKQINDSFGHPVGDQILAQVSGLLRKSVRGNDRVIRWGGEEFLILLENCTDMVA 353

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           A LA  LR  I + Q          +T+S G+A    KE +  +I R D+ALY +K++GR
Sbjct: 354 AELAERLRLRIASEQFQNVG----KVTVSLGVASLFQKESLEQLISRCDEALYKSKRNGR 409

Query: 253 NRVVC 257
           N++  
Sbjct: 410 NQLTL 414


>gi|291613650|ref|YP_003523807.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Sideroxydans lithotrophicus ES-1]
 gi|291583762|gb|ADE11420.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Sideroxydans lithotrophicus ES-1]
          Length = 912

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 86/188 (45%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFK 140
           + + +   S   I + +  D L+GL N   F   L    +        L++VF D+D+FK
Sbjct: 464 TDISQKKESEELIWRQANFDHLTGLPNWRMFHDRLEQEIKKSRRVELPLAVVFLDLDHFK 523

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND  GH  GD ++   + +L         V RLGG+EFA      S+Q++    N+  
Sbjct: 524 EVNDTMGHATGDLLLKEAALRLSSCVRESDTVARLGGDEFALLLGELSDQDSIERVNEC- 582

Query: 201 KIIENSQINISSGPSI-HITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
            I+         G  + +I++S G+         I  ++  ADQA+Y AK SGRNR   +
Sbjct: 583 -ILNKFSAPFQLGNELAYISVSIGVTIYPSDATEIEALLRNADQAMYAAKNSGRNRSCYY 641

Query: 259 SDIENNTC 266
           +    +  
Sbjct: 642 TQAMQSVA 649


>gi|227081388|ref|YP_002809939.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|227009276|gb|ACP05488.1| GGDEF family protein [Vibrio cholerae M66-2]
          Length = 372

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 8/176 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L+    ++  LS  D L+GL N    +  L           +    V  DID FK +N
Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH VGDKV+  +++ L   F +   V RLGG+EF      ++      +A  + + I
Sbjct: 253 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETNTAGGVYIAEQVCRAI 312

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   I++ +      ++S G+A      +    ++  ADQA+Y+AK SG+NRV  F
Sbjct: 313 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHELLRAADQAVYLAKNSGKNRVCAF 368


>gi|332308008|ref|YP_004435859.1| response regulator receiver modulated diguanylate cyclase
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175337|gb|AEE24591.1| response regulator receiver modulated diguanylate cyclase
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 357

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 9/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145
           L    + + +++  D L+ + N   F   L   N+        L ++ FDID+FK  ND 
Sbjct: 183 LKQVTDELRKMAYQDGLTQVSNRRYFNEYLARQNKLKQRSGLPLGLMMFDIDFFKSFNDL 242

Query: 146 FGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD  +  ++  L   V     FV R GGEEFA     +  +   ++A  ++  +E
Sbjct: 243 YGHLAGDDCLRLVAKALSASVVRPGDFVARFGGEEFAIVLPDTDIEGVILVAQKVQAQVE 302

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVC 257
             +IN    P   ++ S GIA    K P    +I RAD+ LY AK +GRN+ V 
Sbjct: 303 ALEINHEGSPLGRVSGSIGIAVSDGKAPEQGKLIERADKHLYQAKATGRNKFVF 356


>gi|294339478|emb|CAZ87837.1| hypothetical protein; putative EAL and GGDEF domains; putative
           membrane protein [Thiomonas sp. 3As]
          Length = 780

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 61/212 (28%), Positives = 104/212 (49%), Gaps = 11/212 (5%)

Query: 58  FYGLEYILVENLSLVIISITISL-LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           F+   +  +  L+L +  +T++  L+   +     +L      + +L+  D L+GLLN  
Sbjct: 312 FWRAYWPALTILALWLAVLTLAYRLVRKQAERDSAQLRDRSEIMYRLANQDSLTGLLNRR 371

Query: 117 AFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
                L   +++        ++V FD+D+FK IND FGH  GD V+  ++  L       
Sbjct: 372 GMGEYLQRAHDRARDHGIGYALVLFDLDHFKLINDGFGHAAGDAVLQQVAHLLQTRVRKE 431

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
             V R GGEEF      SS + A   A  LR++I ++++++  G  + +T S G++    
Sbjct: 432 DQVARWGGEEFLVLLPDSSLETAHATAEKLRELISHTRMSV-GGAELRLTASFGVSAWEP 490

Query: 230 KEPI--STIIYRADQALYVAKKSGRNRVVCFS 259
             P+  + ++ + D ALY AK  GRNRV  F 
Sbjct: 491 GGPLTSAELLGQCDSALYNAKAGGRNRVKQFE 522


>gi|126669067|ref|ZP_01740000.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter sp. ELB17]
 gi|126626469|gb|EAZ97133.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter sp. ELB17]
          Length = 590

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 13/187 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           + + +   +  RI QL+  D L+G+ N       L     +       L++++ D+D+FK
Sbjct: 389 TDITQNRRNEERIHQLAYYDALTGIPNRRLMDDRLEHAIRQTHRNRLGLAVLYIDLDHFK 448

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           QIND  GH VGD ++   +++          + R GG+EF       +  + A  +A  L
Sbjct: 449 QINDTLGHHVGDSLLLQFTERAQTCLREGDTLARFGGDEFVVILPELNGPEAAKTIAQRL 508

Query: 200 R-KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
             K  E+ QI    G ++    S GI+   ++ +    ++ +AD A+Y AK++G N +  
Sbjct: 509 LDKHREDYQI---DGHTLSAGASVGISLYSNEVDTARQLLEQADAAMYTAKRAGGNAICL 565

Query: 258 FSDIENN 264
           F+D E+ 
Sbjct: 566 FTDAESQ 572


>gi|327483913|gb|AEA78320.1| GGDEF family protein [Vibrio cholerae LMA3894-4]
          Length = 372

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 8/176 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L+    ++  LS  D L+GL N    +  L           +    V  DID FK +N
Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH VGDKV+  +++ L   F +   V RLGG+EF      ++      +A  + + I
Sbjct: 253 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETNTAGGVYIAEQVCRAI 312

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   I++ +      ++S G+A      +    ++  ADQA+Y+AK SG+NRV  F
Sbjct: 313 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHELLRAADQAVYLAKNSGKNRVCAF 368


>gi|299532444|ref|ZP_07045835.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298719529|gb|EFI60495.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 648

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 10/172 (5%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNF 146
                 I   +  D L+GL N          FI+        +++ F D+D FK +ND +
Sbjct: 459 KKRQQEIEYQATHDALTGLANRRFINKQMQQFIALADRDQGTVAVCFIDLDGFKSVNDTY 518

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIEN 205
           GH  GD V+  ++++L     T   V RLGG+EF     G +  E A         ++  
Sbjct: 519 GHDAGDIVLKTVAERLTSAVRTHDCVARLGGDEFVVVLTGRNNHENAVQTMQRCLDMVR- 577

Query: 206 SQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I +  G +  +  S GIA     KE   +++ RAD+A+Y+AK +G+ R++
Sbjct: 578 IPIAVEDGHTAIVGCSIGIAYYEGEKESCDSLLERADEAMYLAKNAGKGRII 629


>gi|229157628|ref|ZP_04285703.1| Sensory box/GGDEF family protein [Bacillus cereus ATCC 4342]
 gi|228625585|gb|EEK82337.1| Sensory box/GGDEF family protein [Bacillus cereus ATCC 4342]
          Length = 430

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 85/176 (48%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          NE ++++ FDID FK +
Sbjct: 254 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAV 313

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      ++E+EA  +A  LR  
Sbjct: 314 NDTYGHDFGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTAEKEAFQVAESLRFF 373

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q +  S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 374 IETKQFSGIS----KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCVY 425


>gi|152990267|ref|YP_001355989.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
 gi|151422128|dbj|BAF69632.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
          Length = 765

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 21/204 (10%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---- 123
           N S  II I I           + E   +  ++  L+  D L+ L N  +F   L     
Sbjct: 310 NRSTTIIGIAI----------DVTEEIKAKKQVEFLAYNDPLTSLPNRVSFQDILEKLSK 359

Query: 124 ---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 E+ +++F DID FK +ND +GH +GDK++  ++  L     +   + R+GG+EF
Sbjct: 360 IAQRSKERFALIFLDIDNFKFVNDTYGHEIGDKLLIDIATILKETLRSSDLIFRIGGDEF 419

Query: 181 AAAALGSSEQEAA-ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIY 238
                    +++  I+   +++ +           +  ++ S GIA      + I T+  
Sbjct: 420 VVLIPKVETKDSLDIVLEKIKESVAKE--YRYGNINFSVSCSLGIAIFPDDSDDIETLTR 477

Query: 239 RADQALYVAKKSGRNRVVCFSDIE 262
            AD A+Y AKKSG+NR V F +  
Sbjct: 478 YADIAMYEAKKSGKNRFVFFKEEM 501


>gi|260779022|ref|ZP_05887914.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605186|gb|EEX31481.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 380

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 88/184 (47%), Gaps = 9/184 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           K+L  +  ++ +LS  D L+ L N    I  L +Y        E L  +  D D FKQ+N
Sbjct: 193 KQLSKANKQLEELSLTDPLTQLPNRRCAIRKLKAYWHESTLNQEPLVCIMIDADNFKQVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GD+++  L+  L   F +   V RLGG+EF      +  +  A +A   R+I+
Sbjct: 253 DSAGHDAGDRLLVELAQTLNDSFRSDDLVCRLGGDEFFVICPNTDVEGGAHVAEQTRQIV 312

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              ++          +IS G+AER ++    + +I  AD A+Y AK  GRN V       
Sbjct: 313 AQMRVPAGDDIWCG-SISVGVAERTYEMRDFNDLIKGADNAVYKAKSQGRNCVATCEQPL 371

Query: 263 NNTC 266
           +++ 
Sbjct: 372 HSSA 375


>gi|221197231|ref|ZP_03570278.1| diguanylate cyclase [Burkholderia multivorans CGD2M]
 gi|221203903|ref|ZP_03576921.1| diguanylate cyclase [Burkholderia multivorans CGD2]
 gi|221176069|gb|EEE08498.1| diguanylate cyclase [Burkholderia multivorans CGD2]
 gi|221183785|gb|EEE16185.1| diguanylate cyclase [Burkholderia multivorans CGD2M]
          Length = 508

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 94/197 (47%), Gaps = 15/197 (7%)

Query: 74  ISITISLLLGYIS------GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
           I + +SL  G+++         L+   ++  ++ +L+R D L+GL N  AF ++L     
Sbjct: 302 IIVLMSLFTGFVAWGSLLLSRELRRRQVAEAKLYRLARTDSLTGLDNRGAFDAALAQEAR 361

Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEE 179
                   LS++F D+D+FK  ND +GH  GD V+  ++             + R GGEE
Sbjct: 362 RAARSGRPLSVLFVDVDHFKAYNDYYGHLAGDDVLRRVAQCASGCLRRATDHIARYGGEE 421

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIY 238
           F      +  Q AA +A  +R+ I    I     P  H+T S G A   +     +T++ 
Sbjct: 422 FVVTLPDTDAQGAATVAEGIRRAIAALGIEHVKSPYGHVTASIGTATDAYGRMDAATLLQ 481

Query: 239 RADQALYVAKKSGRNRV 255
            AD ALY AK  GRNRV
Sbjct: 482 LADDALYRAKYGGRNRV 498


>gi|116052366|ref|YP_792677.1| hypothetical protein PA14_56280 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296391036|ref|ZP_06880511.1| hypothetical protein PaerPAb_22909 [Pseudomonas aeruginosa PAb1]
 gi|313106857|ref|ZP_07793066.1| hypothetical protein PA39016_000780025 [Pseudomonas aeruginosa
           39016]
 gi|115587587|gb|ABJ13602.1| hypothetical protein PA14_56280 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310879568|gb|EFQ38162.1| hypothetical protein PA39016_000780025 [Pseudomonas aeruginosa
           39016]
          Length = 375

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 66/281 (23%), Positives = 117/281 (41%), Gaps = 40/281 (14%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYF--SIFFSIF-IATVIFIANIFLFYIGLTPFYGLEYI 64
           +L+ +L H  +L      TFM+++  ++ F +F +   +F     L +I  +  Y +E +
Sbjct: 93  WLTYFLYHVDSLRG----TFMVFYVLALLFGVFQLPPRVFARCAALAFIAFSGIYLVEAL 148

Query: 65  ----------LVENLSLVIISITISLLLGYISGSILKELFISY-------------NRIS 101
                      ++ L + I+ + +SL   YI     +     Y              ++ 
Sbjct: 149 QQRLELPGRAALQVLVMFIVMVWLSLFASYIQAMRQRMRQRRYALQAHQDTLRGMMRQLE 208

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            L   D L+GL N   F+            N +  +   D+D+FK+IND  GH  GD+V+
Sbjct: 209 DLVATDELTGLFNRRHFMRLASRALEDLLPNRQHGLALIDLDHFKRINDRHGHAAGDRVL 268

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +            + R GGEEF      +  ++       LR   E ++     G +
Sbjct: 269 QTFAAVARSCLRDGDVLARYGGEEFVLLLPHADAEQLESCCERLRLAFEQAEP---VGVT 325

Query: 216 I-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  +++S G+      + +   + RADQALY AK+ GRNR 
Sbjct: 326 VDTLSLSVGMTLLYADDDLDEALQRADQALYRAKRGGRNRC 366


>gi|330722368|gb|EGH00221.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           GAF sensor [gamma proteobacterium IMCC2047]
          Length = 715

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 11/191 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
           Y     + +   +   I+  +  D L+ L N + F   L            +++++F D+
Sbjct: 259 YGVARDISDRKEAERTINFQAYHDLLTRLPNRALFKDRLNLAVAQAKRAGHQMAVMFLDL 318

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAIL 195
           D FK +ND  GH  GD+++  +S  L         + R GG+EF         + +A ++
Sbjct: 319 DRFKLVNDTLGHIYGDELLQLVSQSLQDCLRDGDTLARFGGDEFTLLMPEVDSKDDATVV 378

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A  + + +   Q     G  I++TIS GIA        + +++  AD A+Y  K  G+N 
Sbjct: 379 AKKIIERLR--QPFTIEGQEIYVTISVGIAMYPQDGSSMDSLVKNADIAMYHIKGRGKND 436

Query: 255 VVCFSDIENNT 265
              +    N  
Sbjct: 437 YQFYCREMNEA 447


>gi|330504721|ref|YP_004381590.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328919007|gb|AEB59838.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 367

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 112/252 (44%), Gaps = 18/252 (7%)

Query: 20  ESFSPHTFMIYFSIFFSIFIATVIF--IANIFLFYIGLTPFYGLEYILVE-----NLSLV 72
             F  +   IY ++ ++  I+ +         L  +    F  LE+ L       +L  +
Sbjct: 119 PRFVLYAPEIYLNLMWTFAISGLTLKRAMATALVSLLAILFVTLEHSLTPGPQRLHLIWI 178

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS---AFI----SSLGSY 125
           + S +  LL  ++     K +F+  + ++  + ID L+GL N +    F+    +    Y
Sbjct: 179 LASFSFGLLSAFLLEKAHKRMFLHQDSLALSANIDSLTGLWNRARTLHFLVEEAARANRY 238

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
               S+V  DID+FK +ND  GH +GD V+   +  L         VGRLGGEEF     
Sbjct: 239 GTPFSVVLIDIDHFKSVNDTHGHAIGDSVLRQFAGLLRNGVRVVDKVGRLGGEEFLIVLP 298

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            +  + A      L+K I     +         + S GIAE    E + +++ RADQA+Y
Sbjct: 299 ETDVEHAERAVQVLQKRINGFSFDRVERK----SASFGIAEYRPGESLDSLMERADQAMY 354

Query: 246 VAKKSGRNRVVC 257
            AK +GR+R+  
Sbjct: 355 QAKANGRDRIEI 366


>gi|323702177|ref|ZP_08113844.1| diguanylate cyclase [Desulfotomaculum nigrificans DSM 574]
 gi|323532864|gb|EGB22736.1| diguanylate cyclase [Desulfotomaculum nigrificans DSM 574]
          Length = 316

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 79/164 (48%), Gaps = 12/164 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ + +  D L+G  N  A        +     Y   L+++F DID FK  ND FGH  G
Sbjct: 153 RLEKEAETDFLTGFFNKRAIRNILVNELERTIRYGIPLTVIFLDIDNFKTYNDTFGHVAG 212

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+   +D +     T    GR GGEEF     G+ E+ A  +A  +RK IE       
Sbjct: 213 DVVLQKTADIIKNSIRTVDIAGRFGGEEFVIILPGTKEEGAVAVAERIRKSIETYPFPHR 272

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                 +T+S GIA   +   + +++  ADQALY AK+ G+NR 
Sbjct: 273 -----KVTVSLGIALAKNSHSVDSLLEEADQALYQAKRQGKNRF 311


>gi|293415265|ref|ZP_06657908.1| cellulose synthesis regulatory protein [Escherichia coli B185]
 gi|291432913|gb|EFF05892.1| cellulose synthesis regulatory protein [Escherichia coli B185]
          Length = 564

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 542 LADRRLYLAKQAGRNRV-FASD 562


>gi|257487336|ref|ZP_05641377.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 509

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 12/186 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIV 132
           L L ++    L+    + + ++ L+  D L+GL N                   ++LS++
Sbjct: 312 LWLTWLLCRELRRRHRAEDALASLAATDGLTGLDNRRQLDEAMETEWARAQRSGKQLSLL 371

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQE 191
             D+D+FK  N+  GH  GD+ +  ++  +   +      V R GGEEF      +    
Sbjct: 372 MIDVDHFKAFNERHGHQGGDEALRLIAQTISFNIRRPGDRVARYGGEEFVVVLPETDLPG 431

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKK 249
           A ++A  +RK  E+  +    G    IT+S G+        + +      AD+ALY AK 
Sbjct: 432 AMMIAEQIRKAAESLPLFP--GAQQPITVSIGVVSEMVRQGDKLEAFFGIADKALYQAKH 489

Query: 250 SGRNRV 255
            GRNRV
Sbjct: 490 KGRNRV 495


>gi|78044640|ref|YP_360725.1| sensory box protein [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996755|gb|ABB15654.1| sensory box/GGDEF domain/EAL domain protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 769

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 11/183 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           S + + +     +++  ++  D L+ L     F+  L           +KL++ F D+D 
Sbjct: 315 SHTDITQRKQMESKLEYMAFHDPLTNLPRRDVFLERLKVAMADARRNGKKLAVFFVDLDN 374

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK IND+ GH  GD+++  ++ +L         + R+GG+EF       +S ++   +A 
Sbjct: 375 FKIINDSLGHHTGDRLLKKIAKELTKCVRETDTISRVGGDEFIILLPDVNSIEDTDKVAK 434

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            + ++ +  Q    +   + +TIS GIA    H +    I+  AD A+Y AK+ G+N   
Sbjct: 435 RILELFD--QPIKLNNYELPVTISIGIAIYPDHGKSERAILKNADIAMYTAKRKGKNGFQ 492

Query: 257 CFS 259
            F 
Sbjct: 493 YFD 495


>gi|311693697|gb|ADP96570.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s) [marine
           bacterium HP15]
          Length = 724

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 84/193 (43%), Gaps = 12/193 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
           Y +   + E   +   I+  +  D L+ L N + F   L           +KL+++F D+
Sbjct: 272 YGTARDVTERKEAEAFINFQAYHDLLTRLPNRALFKDRLELAITHANRGGQKLAVMFLDL 331

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAIL 195
           D FK IND  GH +GD+++  ++ +L         + R GG+EF        + ++A  +
Sbjct: 332 DRFKVINDTLGHAMGDRLLQAVTHRLEKCLRKGDTLSRFGGDEFTLLLPSIHNHEDARQI 391

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
           A  L   +            + + +S GIA      E +  +I  AD A+Y  K  G++ 
Sbjct: 392 AKKLIDALRA--PFQLGDHEVFVGVSIGIAIFPEAGETMDQLIQNADIAMYHVKGKGKDG 449

Query: 255 VVCFSDIEN-NTC 266
              +SD  + +T 
Sbjct: 450 YRFYSDSMSIDTA 462


>gi|332098568|gb|EGJ03534.1| diguanylate cyclase domain protein [Shigella boydii 3594-74]
          Length = 320

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 91  LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVVYPLLFGWVSYQTATKLAE 150

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 151 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 210

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      +R+ +   ++
Sbjct: 211 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVREGLNTLRL 270

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 271 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 318


>gi|325275282|ref|ZP_08141238.1| diguanylate cyclase [Pseudomonas sp. TJI-51]
 gi|324099590|gb|EGB97480.1| diguanylate cyclase [Pseudomonas sp. TJI-51]
          Length = 358

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 106/229 (46%), Gaps = 10/229 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96
           +    V  +A I +  + L P   L    ++  + + +     L LG++   +  +L   
Sbjct: 118 VLKGAVAQLAGILVGTLLLAPGLQLNATALQIYACLPMLTLYPLALGWVCYRLAIQLGDH 177

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
             R+S LS  D L+GLLNH A+   L               I   DID+FK IND FGH 
Sbjct: 178 KRRLSALSLTDSLTGLLNHGAWKDLLLVKYQKCKQQKAHAVIALIDIDHFKTINDTFGHV 237

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD V+  LS +L          GR GG+EF     G+SE +A  +   LR+ +   +  
Sbjct: 238 VGDCVLRQLSAELRRNLRECDQAGRYGGDEFCVILPGTSEAQACQIMERLREQVSGYR-- 295

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
            +  P + I++S G++      E     +  AD+ALY AK +GR+RV  
Sbjct: 296 NAQLPHLRISLSIGLSPFNASLESPEHWLQEADKALYTAKHAGRDRVNF 344


>gi|227823386|ref|YP_002827358.1| putative response regulator/GGDEF domain transcriptional regulator
           [Sinorhizobium fredii NGR234]
 gi|227342387|gb|ACP26605.1| putative response regulator/GGDEF domain transcriptional regulator
           [Sinorhizobium fredii NGR234]
          Length = 628

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/194 (29%), Positives = 90/194 (46%), Gaps = 13/194 (6%)

Query: 77  TISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNE 127
           T  +++  I+     E  L +S  ++  L+  D L+G++N  AF              N 
Sbjct: 422 TAMVVVSDITVMKQAEIALRLSAEQLKNLAETDGLTGIVNRRAFDEAFMREAARCARGNA 481

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALG 186
            LS++  D+D FK  ND +GHP GD+ +  +S  L+         V R GGEEF      
Sbjct: 482 PLSLLMIDLDRFKAYNDTYGHPAGDQCLRLVSKCLLNSAKRPGDIVARYGGEEFVVLLPE 541

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH---KEPISTIIYRADQA 243
           + E+ AA++A    +++    I  +     H+T S GIA       +     ++  AD A
Sbjct: 542 ADEKAAAVVAEKFARLLGEENIVHAQSEFGHVTASIGIASAMGHLLQAEPGRLLSEADAA 601

Query: 244 LYVAKKSGRNRVVC 257
           LY AK  GRNR++ 
Sbjct: 602 LYEAKMRGRNRILV 615


>gi|99035891|ref|ZP_01314942.1| hypothetical protein Wendoof_01000220 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 460

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 15/191 (7%)

Query: 81  LLGYISGSILKELFISYNRI-----SQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           L+  ++  + ++ +    R+     +++S  D L+   N   F + L          + +
Sbjct: 266 LIARVNSQVKRKRYQDALRMNLFNNAEMSIKDPLTNCYNRRYFDAHLRNIVKDSVEKDRR 325

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS++  DIDYFK +ND+FGH  GD+++  +  ++         + R GGEEF      ++
Sbjct: 326 LSLMILDIDYFKIVNDSFGHSAGDELLKQIQKRISENIRVTDLLARFGGEEFVVVMPDTN 385

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHK--EPISTIIYRADQALY 245
             +A  +A  +RKII      ++   + H +T+S GIAE      + I   I RAD+ LY
Sbjct: 386 VSDAYTIAERIRKIIAKKPFILADKNTTHDVTVSIGIAEMQESDLDNIKEFIVRADKYLY 445

Query: 246 VAKKSGRNRVV 256
            AK SGRNRVV
Sbjct: 446 KAKNSGRNRVV 456


>gi|15641229|ref|NP_230861.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121730346|ref|ZP_01682706.1| GGDEF family protein [Vibrio cholerae V52]
 gi|147674755|ref|YP_001216786.1| GGDEF family protein [Vibrio cholerae O395]
 gi|153801903|ref|ZP_01956489.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|229505191|ref|ZP_04394701.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229511139|ref|ZP_04400618.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229518258|ref|ZP_04407702.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229529695|ref|ZP_04419085.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229608210|ref|YP_002878858.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254848341|ref|ZP_05237691.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255745620|ref|ZP_05419568.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262159105|ref|ZP_06030217.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|262169463|ref|ZP_06037155.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|298498684|ref|ZP_07008491.1| GGDEF family protein [Vibrio cholerae MAK 757]
 gi|9655696|gb|AAF94375.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121627904|gb|EAX60483.1| GGDEF family protein [Vibrio cholerae V52]
 gi|124122548|gb|EAY41291.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|146316638|gb|ABQ21177.1| GGDEF family protein [Vibrio cholerae O395]
 gi|227013133|gb|ACP09343.1| GGDEF family protein [Vibrio cholerae O395]
 gi|229333469|gb|EEN98955.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229344973|gb|EEO09947.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229351104|gb|EEO16045.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229357414|gb|EEO22331.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229370865|gb|ACQ61288.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254844046|gb|EET22460.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255736695|gb|EET92092.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262022276|gb|EEY40985.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|262029290|gb|EEY47942.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|297543017|gb|EFH79067.1| GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 372

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 8/176 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L+    ++  LS  D L+GL N    +  L           +    V  DID FK +N
Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH VGDKV+  +++ L   F +   V RLGG+EF      ++      +A  + + I
Sbjct: 253 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETNTAGGVYIAEQVCRAI 312

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   I++ +      ++S G+A      +    ++  ADQA+Y+AK SG+NRV  F
Sbjct: 313 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHELLRAADQAVYLAKNSGKNRVCAF 368


>gi|254457661|ref|ZP_05071089.1| hypothetical protein CBGD1_1357 [Campylobacterales bacterium GD 1]
 gi|207086453|gb|EDZ63737.1| hypothetical protein CBGD1_1357 [Campylobacterales bacterium GD 1]
          Length = 973

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 11/181 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +  ++ ++I  ++  D L+GL N       L           + ++I + D+D FK IND
Sbjct: 410 QRLLAESKIEFMAYYDVLTGLPNRELLTDRLKQSIALSNRTKQPVAICYLDLDGFKPIND 469

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GDK++   + +          + R+GG+EF     G   Q    L   L ++I+
Sbjct: 470 KFGHETGDKLLKLFAQRFKEHLREGDTISRIGGDEFILLLSGFESQ--KQLKEILVRLID 527

Query: 205 NSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            + I        IHI+ S G            T+I  ADQA+Y AK+ G++  + ++ IE
Sbjct: 528 TANIPFEIDQNRIHISCSIGATIYPIDNSDTDTLIRHADQAMYRAKEIGKSNYIIYTPIE 587

Query: 263 N 263
           N
Sbjct: 588 N 588


>gi|257062144|ref|YP_003140032.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8802]
 gi|256592310|gb|ACV03197.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8802]
          Length = 726

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 12/192 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDI 136
           ++   + E   +  ++   +  D L+GL N SA +  L    E+         +++F D+
Sbjct: 270 VNCHDITERHQTAEQLRYDASHDKLTGLANRSALLKQLKRAIEQKKRRKEDHFALLFLDL 329

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAIL 195
           D FK IND  GH +GD+++  ++ +L         + R GG+EF        +QE A ++
Sbjct: 330 DRFKVINDGLGHLMGDQLLKEMAKRLQRCHREGDLLARFGGDEFVFFLKEIRQQEQAIVV 389

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  + + +   +  I +   + I+ S GI     H +    ++  AD A+Y AK  G+  
Sbjct: 390 AERIHQALR--EPFILNHQEVFISASIGITLSADHYDSPEQMLRDADTAMYWAKARGQGG 447

Query: 255 VVCFSDIENNTC 266
              F+   + + 
Sbjct: 448 HTIFAPTMHLSA 459


>gi|171317239|ref|ZP_02906438.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           MEX-5]
 gi|171097614|gb|EDT42449.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           MEX-5]
          Length = 322

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/203 (28%), Positives = 100/203 (49%), Gaps = 11/203 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           L     +  + +TIS +       + +E   +  ++ + +  D L+G+ N   F + L  
Sbjct: 123 LTRGREVEAVCVTISDVTH--VSVMQREREEAVAKLREHANCDGLTGIANRRFFEARLGD 180

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   LS++ FD+D+FK IND FGH  GD V+   + ++  +  +    GR GG
Sbjct: 181 EFARWQRYGGDLSMLLFDLDHFKTINDRFGHAAGDAVLRETARRVASIVRSQDTFGRFGG 240

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTI 236
           EEFA     ++  EA  +A+ +R  I ++ ++ + G S+ +T S G A           +
Sbjct: 241 EEFALLLPCTNLDEAMRVADKVRDAIGSTPVD-AEGVSVPVTASVGGACATVGATAFDVL 299

Query: 237 IYRADQALYVAKKSGRNRVVCFS 259
           +  AD ALY AK+ GR+R + ++
Sbjct: 300 VNEADTALYRAKRLGRDRSIAYA 322


>gi|54293281|ref|YP_125696.1| hypothetical protein lpl0329 [Legionella pneumophila str. Lens]
 gi|53753113|emb|CAH14560.1| hypothetical protein lpl0329 [Legionella pneumophila str. Lens]
          Length = 740

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 89/188 (47%), Gaps = 11/188 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           S   + E      ++   +  D L+ L N    I  +         +  K +I+FFD+D 
Sbjct: 296 SFRDITEQTRLKEKLEYQATHDALTNLPNRLLLIDRIEHAISSYARHKMKFAILFFDLDR 355

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK IND+  H  GD+++  ++ +L  +      + RLGG+EF       +SE++ A +A 
Sbjct: 356 FKMINDSLSHEAGDQLLCAVAKRLRSLVRKEDTLARLGGDEFVMLFQSFNSEEQIAGVAQ 415

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            + K  +  +    +   I+I +S GI+      + ++T++  AD A+Y AK  G N+  
Sbjct: 416 KILKSFQ--KPFHIAERDINIHVSIGISVYPTDGKTVNTLLSNADMAMYQAKFRGGNQFS 473

Query: 257 CFSDIENN 264
            +++  N 
Sbjct: 474 FYTEKLNK 481


>gi|302187590|ref|ZP_07264263.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 530

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 90/205 (43%), Gaps = 20/205 (9%)

Query: 81  LLGYISGSILKE---------LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124
           L+G+I   I  E         L      +  ++  D L+GL N   F             
Sbjct: 301 LIGHIHSRIRAEDQLLDSQAALIQLNQHLELIASEDKLTGLANRRRFDQFLEVEFKRARR 360

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAA 183
               LS++  D D+FK+ ND++GH  GD+ +  L+  +   +        R GGEE A  
Sbjct: 361 ERSLLSLILIDADHFKRYNDHYGHLAGDECLIALARVVEQFIRRPSDVAARYGGEEIAVV 420

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRA 240
             G+ E  A  +A  + + I + QI   + P   +TIS G+A     +      ++I  A
Sbjct: 421 LPGTDESNARQVAEKILQAIRDEQIEHPASPFGIVTISLGVATFMGTDRQLDERSLIELA 480

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D+ALY AK  GRNRV   S+I   T
Sbjct: 481 DRALYAAKSQGRNRVNVASEIATGT 505


>gi|218673892|ref|ZP_03523561.1| probable urease-associated protein [Rhizobium etli GR56]
          Length = 283

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 78/232 (33%), Positives = 110/232 (47%), Gaps = 1/232 (0%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           + F +  S    I    ++ +    L + GL P      I    +   ++  T+  +L  
Sbjct: 17  YLFALRMSFLAVILSGVILALTIPPLGFFGLLPVNLSHAIGFGAVFSWLVGGTVCGMLSL 76

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQIND 144
            +G  + EL +S     +LSR D LSGLLN  AF  +L       S+V FD+D FK IND
Sbjct: 77  TAGFTMHELTVSRAEFEKLSRTDTLSGLLNRRAFTEALDKTEGNASLVIFDVDRFKAIND 136

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD VI  +S  L+  F     + RLGGEEF     G   +       ++R  I 
Sbjct: 137 RFGHACGDAVITAVSAMLISAFDEMSVIARLGGEEFGVIVSGEPLEARMERIEEVRARIA 196

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  I  + G  I IT+S G+A+         +   AD+ALY+AK  GRNRVV
Sbjct: 197 SGAI-AAEGHDIRITVSGGVADLAAGRSKQAVYASADRALYLAKALGRNRVV 247


>gi|123443785|ref|YP_001007756.1| hypothetical protein YE3597 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090746|emb|CAL13623.1| putative membrane protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 832

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 59/188 (31%), Positives = 86/188 (45%), Gaps = 11/188 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNH---SAFISS----LGSYNEKLSIVFFDIDY 138
           + S +     +  RI  LS  D L+GL N      F+ +    L +    L I+  D+D 
Sbjct: 389 TASDITREIEAQERIQHLSLHDALTGLPNRLRMKEFLENKLHNLAAAPHPLVILNVDLDK 448

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK +ND FGH  GD+V+  +S++L         V R GG+EF     G SS +E   L  
Sbjct: 449 FKPVNDTFGHVAGDQVLHQVSERLRSCLRDQDLVARQGGDEFILIISGLSSTKEIEQLCA 508

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            +   IE+    + +   I I+ S GIA           ++  AD A+Y AK SG NR  
Sbjct: 509 RVIARIES--PYLINEKDIFISASIGIALAPQDSMQAEELLRFADIAMYEAKNSGSNRWS 566

Query: 257 CFSDIENN 264
            +S   N+
Sbjct: 567 FYSSEMND 574


>gi|33596250|ref|NP_883893.1| hypothetical protein BPP1614 [Bordetella parapertussis 12822]
 gi|33573253|emb|CAE36915.1| putative membrane protein [Bordetella parapertussis]
          Length = 475

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 61/181 (33%), Positives = 96/181 (53%), Gaps = 10/181 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSY-NEKLSIVFFDIDY 138
           G  + E   +   +++L+ ID L+   N           I+ L  + ++ L++V  D+D+
Sbjct: 294 GLDITERKRAELALTRLATIDSLTDCWNRAEILKILRQEITRLRQHPDQPLAVVMLDLDH 353

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND  GH VGD  + + SDQL        FVGR+GGEEF A   G     A  +A+ 
Sbjct: 354 FKQLNDLHGHLVGDAALRYFSDQLRSNLRGTDFVGRIGGEEFLALLPGCDGDAALAMADR 413

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           LR  + N     + G +  +++S GIA    ++  +S ++ RAD ALY AK+ GR+R V 
Sbjct: 414 LRAALRNDPFT-TEGQAAPLSVSVGIAFATPEDTAVSDVMRRADTALYEAKRRGRDRAVV 472

Query: 258 F 258
           +
Sbjct: 473 Y 473


>gi|320324986|gb|EFW81058.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329140|gb|EFW85138.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 796

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 88/175 (50%), Gaps = 10/175 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +L      +  LS  D L+G  N   F   +         +   LSI+  DID+FK
Sbjct: 620 SDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSIIMLDIDHFK 679

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +A  LA  LR
Sbjct: 680 RINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRGSQAYQLALSLR 739

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + + N  I    G    +T S GIA     E I T++ RAD  +Y AK++GR+RV
Sbjct: 740 EGLRNQVI---EGVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQAGRDRV 791


>gi|238794159|ref|ZP_04637775.1| Predicted diguanylate cyclase [Yersinia intermedia ATCC 29909]
 gi|238726557|gb|EEQ18095.1| Predicted diguanylate cyclase [Yersinia intermedia ATCC 29909]
          Length = 366

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 73/277 (26%), Positives = 124/277 (44%), Gaps = 22/277 (7%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILV- 66
            L  W    K     +     +  S+F   FI+T+    N   F +   P   L  IL+ 
Sbjct: 87  MLWAWQIILKYEYLGTNENNYLLLSLFTIFFISTIALSDNFLAFCLHTAP-SALTVILLD 145

Query: 67  --ENLSLVIISITISLLLGYISGSILKE-----------LFISYNRISQLSRIDCLSGLL 113
             +N+  ++ +I + L+   +   +L+            L+    + S LS ID L+ L 
Sbjct: 146 DFQNIFRILFTIMLPLIGFSLHHLMLRRSDDFTRKLVARLYNEREKFSDLSMIDPLTSLY 205

Query: 114 NHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
           N     + L +   +      ++  DID+FK  NDN+GH +GD+ +  ++  +     + 
Sbjct: 206 NRRGLENKLETLLAQSPGNHYVLLLDIDHFKAYNDNYGHTMGDQALVRVAAAIRDAVRSR 265

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH--ITISAGIAER 227
             V R GGEEF       SE+ A+ LA  +R+ +    I       +   +T+SAGI+  
Sbjct: 266 DIVVRYGGEEFLVLLTHVSEEYASQLAERVRQRVLGLDIPHVFNHKVSTTVTLSAGISPL 325

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
              +  S++   AD+ALY AKK+GRN+V    +  +N
Sbjct: 326 QAYDLASSL-KAADEALYRAKKNGRNKVAFAGEKLSN 361


>gi|89901405|ref|YP_523876.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Rhodoferax ferrireducens T118]
 gi|89346142|gb|ABD70345.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 802

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 10/183 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLN------HSAF-ISSLGSYNEKLSIVFFDIDYFKQ 141
            L E   +  RI QL+  D L+GL N         F +     +  +  + F D+D+FK 
Sbjct: 361 DLTEELAAQKRIEQLAYSDALTGLPNKLLLSQRVGFALRMAERHGSQFGVFFLDLDHFKN 420

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD+V+  +++++         + RLGG++F         + A +LA  +  
Sbjct: 421 INDSMGHVFGDRVLVEVAERIKRCLRDADTLCRLGGDDFVIFVQEIDARGAEMLAQRILD 480

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++   Q  +    S  +  S GIA        +  +I  AD A+Y+ K+ GR     +  
Sbjct: 481 LMA--QAFLIEETSFSVGCSIGIALYPADGRSLDELIKCADTAMYLVKERGRGSFRFYQP 538

Query: 261 IEN 263
             N
Sbjct: 539 QMN 541


>gi|66043359|ref|YP_233200.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63254066|gb|AAY35162.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 335

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
              + E     N + +L+  D L+   N   F                 L+ +  DID F
Sbjct: 157 AEDITEKKQLENELQRLATTDVLTQSSNRRHFFECAQREFELARLNGTPLAFLLLDIDDF 216

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND +GH  GD V+  +++            GR+GGEEFAA   G +   A  +A  L
Sbjct: 217 KLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCAPDMAMQIAERL 276

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           ++ I+      S+G +  IT S G+      +P + T+  RAD A+Y AK+ G+N++V 
Sbjct: 277 QREIQRQNFQ-SAGTTFSITASQGLTNLGPDDPSLETLYGRADAAMYQAKRQGKNQIVL 334


>gi|39933963|ref|NP_946239.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009]
 gi|39647810|emb|CAE26330.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris
           CGA009]
          Length = 502

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 15/178 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           ++    +  R+ +L+  D L+GL N   F +++          N  ++++  D D+FK  
Sbjct: 320 IERRAAAERRLEELATTDPLTGLTNRRKFDAAIDTEWRRAIRQNTPIALLMIDADHFKAY 379

Query: 143 NDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND+FGH  GD+++  ++  +   V      V R GGEEFA    G +   A  +A  +R+
Sbjct: 380 NDSFGHQAGDQMLVGIAVCIADTVHRAGDCVARFGGEEFAVLLPGLTAPAAEAIAETIRR 439

Query: 202 IIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
            +E       S     +T+S G+A            ++  AD+ALY AK+ GRNR V 
Sbjct: 440 KVEE-----WSDIEGGVTVSIGVASTTPIAAHQWYDLVEAADRALYAAKELGRNRCVV 492


>gi|316935023|ref|YP_004110005.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
 gi|315602737|gb|ADU45272.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
          Length = 359

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/172 (36%), Positives = 92/172 (53%), Gaps = 8/172 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           +L  +Y RI +L+ +D L+G  N           I       E LS+   D+D+FK+IND
Sbjct: 187 QLREAYQRIEELAELDELTGAYNRRRIMRHLDNEIERAARLCEPLSLALIDLDWFKRIND 246

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGHP GD+V+   +  +     +    GR GGEEF      +SE EA ++ + LR I+ 
Sbjct: 247 TFGHPTGDEVLRTFAITIFANIRSFDRFGRYGGEEFLLLLPNTSEDEARLILDRLRLIVA 306

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               +  S PS+ +T+SAG+     +E   +++ RAD+ALY AK  GRNRV 
Sbjct: 307 GLDWSAFS-PSMSVTLSAGVTTMTLQESTESVLSRADRALYEAKHGGRNRVA 357


>gi|307822896|ref|ZP_07653126.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307735671|gb|EFO06518.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 1171

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 95/206 (46%), Gaps = 12/206 (5%)

Query: 64  ILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  E L++  ++     +  YI + S + +L     ++  ++  D L+G+ N       +
Sbjct: 689 IFAEWLTISAVADQQGKITHYIGTSSDITQLKEQERKLELMAHYDPLTGVPNRILLADRM 748

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     N  +++ + D+D FK +ND  GH  GD+++  ++ ++         + RL
Sbjct: 749 HLAFAQTKRDNCLMAVGYLDLDGFKPVNDRLGHEAGDQLLIEVALRIKNALREGDTIARL 808

Query: 176 GGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPI 233
           GG+EF    LG  + ++     + L ++I  S+       ++ ++ S GI+         
Sbjct: 809 GGDEFVFLLLGLEKVEDCETTLHRLLEVI--SEPVSLKNQAVSVSASIGISIFPEDNTDP 866

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
            T++  ADQA+Y AK+ G+N    ++
Sbjct: 867 DTLLRHADQAMYQAKQEGKNCFHIYN 892


>gi|291613703|ref|YP_003523860.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1]
 gi|291583815|gb|ADE11473.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1]
          Length = 392

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 122/284 (42%), Gaps = 37/284 (13%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE--- 67
           IW+ +   L+    H + + F++   +F     + + +FLF +  + F   EY+ V+   
Sbjct: 98  IWIANGSWLDL---HFYFLLFALVGVVFFPIRQWASIVFLFVLNASLFIYCEYVGVKPDP 154

Query: 68  NLSLVIISITISLLLGYISGSILKELFIS----------YNRISQLSRIDCLSGLLNHSA 117
            L L+  ++T      ++S S+   LFI+             + +LS +D L+ L N   
Sbjct: 155 TLFLLGENMTTMFRSAFVSTSLFTLLFITWLGEYVANRNERELEELSGMDMLTHLPNRRR 214

Query: 118 FISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
               L           ++ +++F D+D FK +ND  GH  GD ++  ++ ++        
Sbjct: 215 MEQRLAETIAVSERTGQRGAVLFLDLDNFKPLNDEHGHAAGDLLLQEVAQRISGCIRKMD 274

Query: 171 FVGRLGGEEFAAAALGSSEQE------AAILANDLRKII-ENSQINISS------GPSIH 217
              R GG+EF        +++      AA +A  +R  + E   ++ISS           
Sbjct: 275 MAARFGGDEFVIMLSELGQEQEGARQRAAQVAEKIRIALAEPYLLDISSAGGDRESVKHR 334

Query: 218 ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
            + S G+          + I+ RAD A+Y +K+ GRN++    +
Sbjct: 335 CSASIGVEMFVGGAMSEADILKRADAAMYQSKEHGRNKISFHEE 378


>gi|292900137|ref|YP_003539506.1| signal transduction protein [Erwinia amylovora ATCC 49946]
 gi|291199985|emb|CBJ47109.1| putative signal transduction protein [Erwinia amylovora ATCC 49946]
          Length = 535

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 83/164 (50%), Gaps = 9/164 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+   ++ D L+GLLN     + L    S  +  +++  DID FK +ND FGH  GD VI
Sbjct: 359 RLKSEAQTDPLTGLLNRRGLDAVLDYFLSTGQPFALLALDIDRFKGVNDAFGHAAGDTVI 418

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++ QL +       + R GGEEF     G+    A ++A  +RK IE  QI+      
Sbjct: 419 KTVAQQLGLGARQSDVLCRNGGEEFLMILPGADRDRALMIAERVRKRIEQFQIDAIG--- 475

Query: 216 IHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
            ++TIS GI+         +     +AD+ALY AK +GRN VV 
Sbjct: 476 -NVTISIGISFWSSDSENDMHDAFGQADEALYRAKNTGRNCVVI 518


>gi|241113039|ref|YP_002972874.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240861247|gb|ACS58913.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 405

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 71/264 (26%), Positives = 113/264 (42%), Gaps = 25/264 (9%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV------ 72
           +  F   T +I F I     +A       I+L +    P   +   L   L         
Sbjct: 132 IMLFVAVTAIIIFPIPLGWAMAIGASALGIYLVFQLRNPAIEVGSALAGTLFFASGVAAT 191

Query: 73  -------IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-- 123
                   I    + LL     S L EL  + +++  L+R D L+G+ N  + + +L   
Sbjct: 192 VVARRTATIFAQKTFLLELRDRSRLAELTDANSQLELLARTDPLTGVANRRSMMETLHYF 251

Query: 124 -----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGG 177
                      +++  DID FK +NDN GH  GD+ +  ++  +          V R GG
Sbjct: 252 WSEDLKRTSGAAMLMCDIDDFKHLNDNLGHAEGDRCLVKVAGIIQSSMRDERDQVARYGG 311

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKE---PI 233
           EEF     GS EQEA ++A  +R  +E + +   +   + ++T+S G+A           
Sbjct: 312 EEFLVFLPGSDEQEAKVVAERIRSRVEAASLPNPTSRVVAYVTVSIGVATMMQDSELVSA 371

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
             +  +AD ALY+AKK+GRNRVV 
Sbjct: 372 EHMQRQADAALYLAKKTGRNRVVV 395


>gi|221196783|ref|ZP_03569830.1| WspR [Burkholderia multivorans CGD2M]
 gi|221203452|ref|ZP_03576471.1| WspR [Burkholderia multivorans CGD2]
 gi|221177386|gb|EEE09814.1| WspR [Burkholderia multivorans CGD2]
 gi|221183337|gb|EEE15737.1| WspR [Burkholderia multivorans CGD2M]
          Length = 344

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 10/177 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+ L N       L +   +       LS++  D+D+FK  N
Sbjct: 161 QQLLEANLELRRLMHSDGLTELSNRRYLDEYLAAEWRRGTRERAELSLLMIDVDHFKLYN 220

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD V+  ++  +      +     R GGEEFA    G+S   A +L   +R  
Sbjct: 221 DTYGHVSGDHVLRQVATTIAQCLRPSGDLAARFGGEEFAVVMPGTSAGAARLLGEKIRLA 280

Query: 203 IENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++  ++      + H+T+S G A        P + +I  AD+ALY AK+ GRNRV  
Sbjct: 281 VDALRLEHGQSTAGHVTVSIGGASIVPAPGLPTTALIEAADRALYRAKRDGRNRVEV 337


>gi|17549376|ref|NP_522716.1| hypothetical protein RS05432 [Ralstonia solanacearum GMI1000]
 gi|17431629|emb|CAD18306.1| probable signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum GMI1000]
          Length = 915

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 90/185 (48%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136
            +S + + +   +  R+  L+  D L+GL N S FI+ L S  E+       L++ F D+
Sbjct: 457 MLSFADITDFKRAEQRLRHLASHDALTGLTNRSFFIAHLDSAIERARDESRELALFFLDL 516

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAIL 195
           D FK +ND  GH  GD ++   + +L    G    + RLGG+EF        E +  A L
Sbjct: 517 DRFKSVNDTAGHACGDTLLQSAAARLTDCIGPGDVIARLGGDEFVILIEQRVEGKRIAQL 576

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           A  L   +     +  +G   ++ +S G+A   H     S ++  AD A+Y AK++GRNR
Sbjct: 577 AERLLAAMRE-PFDTVNG-RYYLGVSIGVALYPHDGISGSDLLRSADAAMYRAKQNGRNR 634

Query: 255 VVCFS 259
              ++
Sbjct: 635 AQFYT 639


>gi|89108787|ref|AP_002567.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           W3110]
 gi|90111360|ref|NP_416465.2| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|170081599|ref|YP_001730919.1| diguanylate cyclase [Escherichia coli str. K-12 substr. DH10B]
 gi|238901160|ref|YP_002926956.1| putative diguanylate cyclase [Escherichia coli BW2952]
 gi|253773096|ref|YP_003035927.1| diguanylate cyclase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|20140530|sp|P76330|YEDQ_ECOLI RecName: Full=Probable diguanylate cyclase YedQ; Short=DGC;
           AltName: Full=Cellulose synthesis regulatory protein
 gi|1736626|dbj|BAA15784.1| predicted diguanylate cyclase [Escherichia coli str. K12 substr.
           W3110]
 gi|87082007|gb|AAC75022.2| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|169889434|gb|ACB03141.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238862233|gb|ACR64231.1| predicted diguanylate cyclase [Escherichia coli BW2952]
 gi|253324140|gb|ACT28742.1| diguanylate cyclase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|260448932|gb|ACX39354.1| diguanylate cyclase [Escherichia coli DH1]
          Length = 564

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 542 LADRRLYLAKQAGRNRV-FASD 562


>gi|217968638|ref|YP_002353872.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Thauera sp. MZ1T]
 gi|217505965|gb|ACK52976.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Thauera sp. MZ1T]
          Length = 737

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 61/212 (28%), Positives = 100/212 (47%), Gaps = 14/212 (6%)

Query: 67  ENLSLVIISITISLLLGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSL- 122
           E L+++  S+T  L L    G + +E      +  RI QL+  D L+GL N +A +  L 
Sbjct: 261 EALAVLARSVTDELELRQRVGELEEEVARRHEAEARIMQLATRDALTGLPNRAALMDRLH 320

Query: 123 ------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                       L+++F D+D FK IND  GH +GD ++  ++ +L         V RLG
Sbjct: 321 QGVRAAQRSGNLLAVLFLDLDRFKWINDTLGHDLGDALLQEMALRLSRAVRECDTVARLG 380

Query: 177 GEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPIS 234
           G+EFA       +  +A  +A  +  +I  ++     G ++ +  S G+A          
Sbjct: 381 GDEFAIVLGDLWQVADAEAVAAKIVDVI--TRPLEVRGHALRVGGSVGVAVYPFQAHDEE 438

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           +++  AD A+Y AK+SG NR   FS+  N   
Sbjct: 439 SLLRHADLAMYHAKESGGNRHQLFSEQMNARA 470


>gi|144897254|emb|CAM74118.1| GGDEF domain [Magnetospirillum gryphiswaldense MSR-1]
          Length = 378

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 107/222 (48%), Gaps = 10/222 (4%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101
           ++  A +      ++  +  +  +  N +L ++    +   G+    ++KE   +   + 
Sbjct: 160 LVLAALLRAGVATVSATWQPDSAVAVNQALFMLGYLSATTDGFSFLLLVKE--DADRSLL 217

Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N + F+              + L+ V  DID+FK +ND++GH  GD+V
Sbjct: 218 RMATEDALTGLSNRATFMQRAAECWRLHARLKQPLAAVMMDIDHFKMVNDHYGHAAGDEV 277

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +   L          GR+GGEEFA    GS   EA ++A  +R  I      +++G 
Sbjct: 278 LRLVGTVLHDHLREVDICGRMGGEEFAILLPGSGRDEAELVAERVRCAIAALVPQVAAGM 337

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            + ++ S G++     + +  ++  AD  LY AK+SGR+RVV
Sbjct: 338 -VRVSASLGVSVAEPGQTLEQLLSVADVNLYRAKQSGRDRVV 378


>gi|144900928|emb|CAM77792.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 539

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 8/163 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           ++  +  D L+GL N   FI                L++++ D+D+FK INDN+GH +GD
Sbjct: 373 LTHQAMTDPLTGLCNRRHFILRANEELHRARRTGAPLAVLYLDVDHFKTINDNYGHGLGD 432

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  ++       G    + R+GGEEFAA   G  +  A + A  LR+ +         
Sbjct: 433 QVLVTVARACRDALGGEDLLARMGGEEFAAVLPGQDKVAAQMTAERLRRCLGEVVTRSED 492

Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           G  I ITIS G+A     +  + T++ RAD+ALY AK  GRNR
Sbjct: 493 GRLITITISIGVATLADDDGDMLTVLDRADRALYQAKTLGRNR 535


>gi|121535140|ref|ZP_01666956.1| diguanylate cyclase [Thermosinus carboxydivorans Nor1]
 gi|121306249|gb|EAX47175.1| diguanylate cyclase [Thermosinus carboxydivorans Nor1]
          Length = 794

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 100/227 (44%), Gaps = 27/227 (11%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQL 103
            +  I L + G      LE +    L    I++ +             E    YN++  +
Sbjct: 575 LLGVIILGWRGFVAPDRLERLPFAALMAQQIALGL-------------EKANLYNQVKAM 621

Query: 104 SRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  D L+GL N   F   L +           LS++ FD+D FK  ND +GH  GDK++A
Sbjct: 622 ALSDGLTGLANRRNFDMFLKAELRRSFTLKRPLSLIMFDLDKFKTYNDTYGHLTGDKLLA 681

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-S 215
            + + L     +     R GGEEF+      +  EA  +A  LR+I+E +    + G  +
Sbjct: 682 QIGEILRHNVRSIDLPARYGGEEFSIILPECTNAEALAIAEKLRQIVEETHFPDNLGAFT 741

Query: 216 IHITISAGIAERCHK------EPISTIIYRADQALYVAKKSGRNRVV 256
             IT S G+A             +  +I  AD+ALY AK+ GRNRVV
Sbjct: 742 ARITASLGVATYDPAITSGGVPDMEDLIAWADKALYQAKQQGRNRVV 788


>gi|116692517|ref|YP_838050.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
 gi|116650517|gb|ABK11157.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
          Length = 516

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 9/185 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFF 134
             I    +     +   I  L+R D L+GL N     + L     +         ++++ 
Sbjct: 321 AVIIVEDVTTRRQTEQHIRHLARHDALTGLPNRHELHAELKRMLARRPRLPSPAFAVMYL 380

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND FGH  GD+V+  ++++L           R+GG+EF  A   ++ Q  +I
Sbjct: 381 DLDGFKSINDRFGHQAGDEVLTQVAERLGKTLPPGELAARIGGDEFIVAIDDTTMQACSI 440

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           LA  + + I ++   +S G ++ I IS GIA          +I +AD ALY AK +G+  
Sbjct: 441 LAARIIRQI-SAPYALSIGETVCIGISIGIALDDGHGSPDELIRQADSALYDAKSAGKGI 499

Query: 255 VVCFS 259
              +S
Sbjct: 500 YCFYS 504


>gi|331010553|gb|EGH90609.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 796

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 88/175 (50%), Gaps = 10/175 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +L      +  LS  D L+G  N   F   +         +   LSI+  DID+FK
Sbjct: 620 SDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSIIMLDIDHFK 679

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +A  LA  LR
Sbjct: 680 RINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRGSQAYQLALSLR 739

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + + N  I    G    +T S GIA     E I T++ RAD  +Y AK++GR+RV
Sbjct: 740 EGLRNQVI---EGVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQAGRDRV 791


>gi|330862839|emb|CBX72980.1| hypothetical protein YEW_FE22280 [Yersinia enterocolitica W22703]
          Length = 519

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/162 (32%), Positives = 81/162 (50%), Gaps = 7/162 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++   ++ D ++GL N     ++L       +  S++  DID+FK+IND++GH VGD+VI
Sbjct: 361 KLRFEAQTDPMTGLYNRRGLATTLEPIVQLGQHFSVIALDIDHFKEINDSYGHDVGDEVI 420

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L+ Q+         + R GGEEF      +    +  +A  LR  +E   +       
Sbjct: 421 KQLAIQIRESSRDSDILCRSGGEEFLMLLPSTVPDVSTQVAKRLRHNVEMMVMANIR--- 477

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             ITIS G+A    +      + RAD+ALY AK+ GRNRV  
Sbjct: 478 -PITISLGVAFWNGEGTPEDALKRADEALYRAKQQGRNRVEV 518


>gi|323528830|ref|YP_004230982.1| diguanylate cyclase [Burkholderia sp. CCGE1001]
 gi|323385832|gb|ADX57922.1| diguanylate cyclase [Burkholderia sp. CCGE1001]
          Length = 477

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 109/239 (45%), Gaps = 12/239 (5%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96
           + +    +I ++ L  +     Y L + +     +   S  + LLL   +  +   L  +
Sbjct: 237 LMVVLCAWICDVALSAVFNEGRYDLGFYVGRIYGMCATSFVLLLLLVE-NTFLHSRLAAA 295

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHP 149
            + + +L+  D L+G+ N  AF ++L ++ ++       LS++  DID+FK  ND +GH 
Sbjct: 296 LDELKRLATTDPLTGVANRRAFEAALTAHWQRASHDGSTLSLLMIDIDFFKLFNDRYGHV 355

Query: 150 VGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            GD+ +  +++ L   V      V R GGEEF      ++   AA +A  +   +    +
Sbjct: 356 EGDRCLVLVAECLARAVRRGSDQVARYGGEEFVVLLPDTNAASAAHVARRMCDAVAALCV 415

Query: 209 NISSGPSIH-ITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENN 264
                PS   ITIS G+A R       T  +   AD ALY+AK +GR RV   +  E  
Sbjct: 416 PNEGSPSFRKITISVGVASRVIDAGSETTVLTRAADHALYLAKAAGRGRVEQAAHAERQ 474


>gi|271501959|ref|YP_003334985.1| diguanylate cyclase [Dickeya dadantii Ech586]
 gi|270345514|gb|ACZ78279.1| diguanylate cyclase [Dickeya dadantii Ech586]
          Length = 514

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 63/169 (37%), Positives = 87/169 (51%), Gaps = 5/169 (2%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHP 149
           L     R+S  +  D LSG+LN    + S+       +K+S++  DID+FK IND+FGH 
Sbjct: 335 LHKRIGRLSSEAHTDPLSGMLNRRGMLESMEEIRGEYKKVSVIAIDIDHFKSINDSFGHD 394

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD VI  LS Q+   F     V R+GGEEF     G+    A ++A  LR  + N+ + 
Sbjct: 395 VGDMVIRKLSQQIRKNFRKTDLVCRIGGEEFLILLPGADIHVATVIAERLRNNVANT-VY 453

Query: 210 ISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +       +TIS G+      K  +   I  AD ALY AK  GRN+VV 
Sbjct: 454 VPGSQHHQVTISIGVTTFNPQKSALDIAIKTADNALYKAKNGGRNQVVV 502


>gi|160873802|ref|YP_001553118.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160859324|gb|ABX47858.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|315266026|gb|ADT92879.1| diguanylate cyclase [Shewanella baltica OS678]
          Length = 466

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 103/229 (44%), Gaps = 15/229 (6%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI---SGSILKELFISY 97
           +V  +A+  L  + LT F G  + L    + +  S++  +LL  +      +      + 
Sbjct: 225 SVALLAS--LIDVTLTLFAGARFSLGWYAARISSSVSSMVLLCALLWEVNRLYVATQRAN 282

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
             + Q S  D L+GL N     S L         + E L ++  D+D+FK  ND  GH  
Sbjct: 283 ESLYQQSVKDTLTGLFNRRYLESQLAIHIDHAKRHKEPLCLLVLDVDHFKAFNDQHGHLA 342

Query: 151 GDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD  +  ++ QL   ++    F+ R GGEEF      +  ++   +A  LR  +   +I 
Sbjct: 343 GDDCLVTVAKQLEQSLYRPADFIARYGGEEFIVVLPHTDAKDGMQIAERLRLNVSAEKIE 402

Query: 210 ISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
              G  + +TIS G A   H +E   +++  AD ALY AK +GRN V  
Sbjct: 403 Y-QGQLLSVTISIGCAVLRHSEETAQSLLIAADSALYQAKAAGRNCVKV 450


>gi|127514258|ref|YP_001095455.1| diguanylate cyclase [Shewanella loihica PV-4]
 gi|126639553|gb|ABO25196.1| diguanylate cyclase [Shewanella loihica PV-4]
          Length = 401

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 17/236 (7%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL---- 90
            ++ + + I +  +      L     +E  L  +L+ +  +  I +L  Y+  ++     
Sbjct: 154 IAVILLSPIALMGVIFGLRALLLL--IEPALKSHLASIQSADAIPMLWLYVVMTLWINVI 211

Query: 91  ---KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
                L     ++ Q +  D L+GL N  A    L   +++        S++ FD+D+FK
Sbjct: 212 MMGNALTRLVQKMRQQADRDYLTGLWNRRAMQQQLEQLHQRWLRDGQAYSLILFDLDFFK 271

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           QIND FGH  GD V+   + Q+  V        RLGGEEF     G+  + A I+A  L+
Sbjct: 272 QINDKFGHSAGDAVLVKTAQQIGKVTRAMDIFCRLGGEEFLLVLPGTDGEVAEIIAQKLQ 331

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +  S +N   G  I I+ S GI      +   +++  AD+A+Y AK++GR+R  
Sbjct: 332 QALRQSSLNW-QGSLIPISASFGIVTTATGDTPDSLLALADKAMYRAKETGRDRCC 386


>gi|325920561|ref|ZP_08182483.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           gardneri ATCC 19865]
 gi|325548954|gb|EGD19886.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           gardneri ATCC 19865]
          Length = 982

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 84/172 (48%), Gaps = 10/172 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL ++   ++  +  D L+GLLN           ++      + L++V  D+D+FK +N
Sbjct: 801 RELEVARAELALKATHDELTGLLNRAGILHALRGMLARATVQAQPLAVVLIDLDHFKLVN 860

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD V+A +  +L  +      +GR GGEE  A   G +      L    R I 
Sbjct: 861 DQHGHLAGDAVLAEVGRRLDTLVRGDDRIGRYGGEELLALLPGLNADSTHRLQALHRGIC 920

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  I    G  + +T S G+A     E +  ++ RAD ALY AK+SGRNR+
Sbjct: 921 GDYPI---DGSVLAVTCSIGVAWFQPGETLEQLLARADAALYRAKRSGRNRI 969


>gi|311696236|gb|ADP99109.1| GGDEF domain protein [marine bacterium HP15]
          Length = 367

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 67/266 (25%), Positives = 102/266 (38%), Gaps = 18/266 (6%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSI-------FIATVIFIANIFLFYIGLTPFYG 60
            L  +L       +  P  F ++  + F +        +    ++  + +F     P   
Sbjct: 87  LLFTYLIASGGESNTGPLWFYVFPPLLFYLTDLKTGTAVLLFCYLVAVVVFQFPGLPLVS 146

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSA 117
            EY +   +         S+    +  S LK   EL          +R D L+GL N   
Sbjct: 147 AEYSMDFKIRFFAALTFESIFCFVLEASRLKARNELLTLAETHEHAARTDELTGLANRRD 206

Query: 118 FISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
             + L              SI   D+D FKQIND FGH  GD V+   +  +  V     
Sbjct: 207 MQNRLAMEFSRYQRSGHHFSIALIDLDLFKQINDQFGHDAGDDVLREFAGLIRTVIRQAD 266

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
              R GGEEF      +S  +A  LA  LR  +           ++ +TISAG+      
Sbjct: 267 VAARWGGEEFLVLLPDTSLLQALTLAERLRSDVSRHAFRFRD-QALPVTISAGVCSIAKA 325

Query: 231 EPISTIIYRADQALYVAKKSGRNRVV 256
             +  ++ +AD  LY AK+SGRNR+ 
Sbjct: 326 RSLDDLLKQADLHLYNAKESGRNRIA 351


>gi|237801120|ref|ZP_04589581.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331023977|gb|EGI04034.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 719

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 102/213 (47%), Gaps = 19/213 (8%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G   +L  ++  + ++ T  LL+   +   + +L  +  +I  L+  D L+GL N +  +
Sbjct: 239 GDPLVLDISVDFITLNETACLLM---NARDIGQLKNAQAQIHHLAYHDPLTGLPNRALLM 295

Query: 120 SSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             LG         N + +++F D+DYFK IND+ GHPVGD V+  ++ +L         V
Sbjct: 296 DRLGQQLSLLKHQNLRGALLFLDLDYFKHINDSLGHPVGDSVLNVVAARLEASVRQEDTV 355

Query: 173 GRLGGEEFAAAALGSS------EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
            RLGG+EF     G         ++  +L+++LR ++         G  + +T S GI  
Sbjct: 356 ARLGGDEFVVLICGLDGSLDEVTRKVRVLSDNLRVLLAEPMF--LDGHRLQVTPSIGIVL 413

Query: 227 RCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
                   + ++ RAD ALY AK +GRN    F
Sbjct: 414 IPDDGLTPADVLKRADIALYRAKDAGRNTSQFF 446


>gi|221197620|ref|ZP_03570667.1| diguanylate cyclase [Burkholderia multivorans CGD2M]
 gi|221204293|ref|ZP_03577311.1| diguanylate cyclase [Burkholderia multivorans CGD2]
 gi|221176459|gb|EEE08888.1| diguanylate cyclase [Burkholderia multivorans CGD2]
 gi|221184174|gb|EEE16574.1| diguanylate cyclase [Burkholderia multivorans CGD2M]
          Length = 312

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 101/203 (49%), Gaps = 11/203 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           L     +  + +TIS +       + +E   +  ++ + +  D L+G+ N   F + L  
Sbjct: 113 LTRGRDVEAVCVTISDVTH--VSVMQREREEAVAKLREHANRDGLTGIANRRYFETRLGE 170

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   LS++ FD+D+FK IND FGH VGD V+   + ++  +       GR GG
Sbjct: 171 EFARWQRYGGDLSMLLFDLDHFKAINDRFGHAVGDAVLRETARRVAAIVRAQDTFGRFGG 230

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STI 236
           EEFA     ++  EA  +A+ +R  I  + ++ + G S+ +T S G A     +P    +
Sbjct: 231 EEFALLLPCTNLDEALQVADKVRDAIGRTTVD-AEGVSVAVTASVGAACAKLGQPACDAL 289

Query: 237 IYRADQALYVAKKSGRNRVVCFS 259
           +  AD ALY AK+ GR+R V ++
Sbjct: 290 VNDADAALYRAKRLGRDRSVGYA 312


>gi|126175898|ref|YP_001052047.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|125999103|gb|ABN63178.1| diguanylate cyclase [Shewanella baltica OS155]
          Length = 460

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 103/227 (45%), Gaps = 15/227 (6%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI---SGSILKELFISY 97
           +V  +A+  L  + LT F G  + L    + +  S++  +LL  +      +      + 
Sbjct: 225 SVALLAS--LIDVTLTLFAGARFSLGWYAARISSSVSSMVLLCALLWEVNRLYVATQRAN 282

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
             + Q S  D L+GL N     S L         + E L ++  D+D+FK  ND  GH  
Sbjct: 283 ESLYQQSVKDTLTGLFNRRYLESQLAIHIDHAKRHKEPLCLLVLDVDHFKAFNDQHGHLA 342

Query: 151 GDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD  +  ++ QL   ++    F+ R GGEEF      +  ++   +A  LR  +   +I 
Sbjct: 343 GDDCLVAVAKQLEQSLYRPADFIARYGGEEFVVVLPHTDAKDGMQIAERLRLNVSAKKIE 402

Query: 210 ISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
              G  + +TIS G A   H +E   +++  AD ALY AK +GRN V
Sbjct: 403 Y-QGQLLSVTISIGCAVLRHSEETAQSLLIAADSALYQAKAAGRNCV 448


>gi|228980720|ref|ZP_04141025.1| Sensory box/GGDEF family protein [Bacillus thuringiensis Bt407]
 gi|228778889|gb|EEM27151.1| Sensory box/GGDEF family protein [Bacillus thuringiensis Bt407]
 gi|326941817|gb|AEA17713.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 386

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ +D L+ + N   F   L          +EK++I+ FDID FK +
Sbjct: 210 ITELDEIYQEQERLAMVDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTV 269

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 270 NDTYGHDFGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 329

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q    S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 330 IETKQFTGIS----KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 381


>gi|119487283|ref|ZP_01621034.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]
 gi|119455838|gb|EAW36973.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]
          Length = 519

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 12/217 (5%)

Query: 53  IGLTPFYGLEYILVENLSLVII-SITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           + +  FY  + I  ++  + +I ++   L        + ++L  +   +  L+ +D L+ 
Sbjct: 290 LAILVFYHTQAIPYQSRIVELIQAVATQLSSSLQQAQLKQKLQRANQELELLANLDGLTQ 349

Query: 112 LLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-V 163
           + N   F          +      LS++  D+DYFK+ ND +GH  GD  +  ++  L  
Sbjct: 350 IANRRHFDYHLQQEWQRMQRLQLPLSLILCDVDYFKRYNDCYGHLAGDDCLIQVAQTLYQ 409

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISA 222
            +      V R GGEEFA     +    A  +A  +R  I   QI  +    S  +TIS 
Sbjct: 410 SMQRAADIVARYGGEEFAIILPYTDTPGAIAVAERIRTCILELQIPHADSQISPIVTISL 469

Query: 223 GIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
           G++            +I  AD+ALY AK+SGRN    
Sbjct: 470 GVSSLIPTSSCSPQCLIQLADEALYQAKQSGRNTYAV 506


>gi|89092612|ref|ZP_01165565.1| sensory box/GGDEF family protein [Oceanospirillum sp. MED92]
 gi|89083124|gb|EAR62343.1| sensory box/GGDEF family protein [Oceanospirillum sp. MED92]
          Length = 862

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 11/185 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYF 139
            S++  L +    +   +  D L+ L N           IS    +    +++F D+D+F
Sbjct: 422 NSMIDGLNMQAEELRHRAFHDHLTSLPNRMHSSTQLDLMISHTIKHQATAALLFIDLDHF 481

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILAND 198
           K+IND  GH  GD+++  +S +L         V RLGG+EF     +  +  +A  +A  
Sbjct: 482 KEINDTLGHSTGDELLRKVSQRLRRSVREEDIVARLGGDEFTVITGVLETRSDAESIAQK 541

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVC 257
           L    E  +  +  G  + +T S G++        S  ++  AD A+Y AK++GRN    
Sbjct: 542 LLN--ELIRPYLIDGNELSVTASIGVSFFPEDGDNSEILLRNADSAMYEAKRNGRNGYRL 599

Query: 258 FSDIE 262
           ++   
Sbjct: 600 YTSAM 604


>gi|330979900|gb|EGH78200.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 424

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 65/285 (22%), Positives = 118/285 (41%), Gaps = 36/285 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL------FYIG 54
           + +S    L +WL  +    +     +M    + +++F+ +   +   +L          
Sbjct: 133 LEQSYPVELQVWLA-DIRWPALHGA-WMSLIQLSYAMFLVSFAVLIWQYLEKPRPLHAAQ 190

Query: 55  LTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           +    GL + L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL 
Sbjct: 191 IVGLLGLFWALPKTFILPFTLNILCSQVMLMIAAAVAHEAY-------QMAFRDELTGLP 243

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A    +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        
Sbjct: 244 GRRALNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAY 303

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------------------- 214
           R GGEEF       S  E       +R+ I + +I + +                     
Sbjct: 304 RYGGEEFPIVFAAKSIDECMPHLEAIRETIASYEIQLRNKNDRPQDDQQGRQCRSGAQAG 363

Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S+ +T+S G+AER         ++  ADQALY AK +GRN VV +
Sbjct: 364 SVSVTVSIGVAERQPEHRTPEEVLKSADQALYAAKGAGRNCVVAY 408


>gi|330867881|gb|EGH02590.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 490

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 12/186 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIV 132
           L L ++    L+    + + ++ L+  D L+GL N                   ++LS++
Sbjct: 293 LWLTWLLCRELRRRHRAEDALASLAATDGLTGLDNRRQLDEAMETEWARAQRSGKQLSLL 352

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQE 191
             D+D+FK  N+  GH  GD+ +  ++  +   +      V R GGEEF      +    
Sbjct: 353 MIDVDHFKAFNERHGHQGGDEALRLIAQTISFNIRRPGDRVARYGGEEFVVVLPETDLPG 412

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKK 249
           A ++A  +RK  E+  +    G    IT+S G+        + +      AD+ALY AK 
Sbjct: 413 AMMIAEQIRKAAESLPLFP--GAQQPITVSIGVVSEMVRQGDKLEAFFGIADKALYQAKH 470

Query: 250 SGRNRV 255
            GRNRV
Sbjct: 471 KGRNRV 476


>gi|289627905|ref|ZP_06460859.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289647324|ref|ZP_06478667.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 509

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 12/186 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIV 132
           L L ++    L+    + + ++ L+  D L+GL N                   ++LS++
Sbjct: 312 LWLTWLLCRELRRRHRAEDALASLAATDGLTGLDNRRQLDEAMETEWARAQRSGKQLSLL 371

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQE 191
             D+D+FK  N+  GH  GD+ +  ++  +   +      V R GGEEF      +    
Sbjct: 372 MIDVDHFKAFNERHGHQGGDEALRLIAQTISFNIRRPGDRVARYGGEEFVVVLPETDLPG 431

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKK 249
           A ++A  +RK  E+  +    G    IT+S G+        + +      AD+ALY AK 
Sbjct: 432 AMMIAEQIRKAAESLPLFP--GAQQPITVSIGVVSEMVRQGDKLEAFFGIADKALYQAKH 489

Query: 250 SGRNRV 255
            GRNRV
Sbjct: 490 KGRNRV 495


>gi|192359514|ref|YP_001981267.1| putative signal transduction protein [Cellvibrio japonicus Ueda107]
 gi|190685679|gb|ACE83357.1| putative signal transduction protein [Cellvibrio japonicus Ueda107]
          Length = 867

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 9/184 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + E   +  ++  L+  D L+GL N   F +SL          + +  +V+ D+D+FK I
Sbjct: 423 VTEQRAAQEQLKYLAMHDSLTGLNNRHFFETSLKQLTADALRNHRQHGLVYIDLDHFKVI 482

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+FGH  GD+V+  ++  L      P    RLGG+EFA      S+Q+A   A D++++
Sbjct: 483 NDSFGHQKGDEVLREVAHLLRRRIRRPDIFCRLGGDEFAVLLHDVSQQQAEEFARDIQQL 542

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                   S G  I++  S G+    +  E     + RAD ALYVAK  GRN +  +   
Sbjct: 543 ASEFNFQ-SQGQRINLGCSIGLTLINNSTERAEEHLMRADIALYVAKGRGRNLIHVYDPE 601

Query: 262 ENNT 265
           ++ +
Sbjct: 602 DSES 605


>gi|163792352|ref|ZP_02186329.1| hypothetical protein BAL199_15933 [alpha proteobacterium BAL199]
 gi|159182057|gb|EDP66566.1| hypothetical protein BAL199_15933 [alpha proteobacterium BAL199]
          Length = 403

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 61/193 (31%), Positives = 84/193 (43%), Gaps = 12/193 (6%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVF 133
           LL      +  EL  +   I  L+R D L+GL N   F       I+        LS++ 
Sbjct: 215 LLLQTGERLEAELRRARQDIETLARTDSLTGLWNRRHFEDMIEVEIARSQDEGSPLSLLA 274

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D DYFK++ND FGH  GD V+  L+D L         + R GGEEF      +   EAA
Sbjct: 275 IDADYFKRVNDRFGHHTGDAVLRELTDLLGQQIRERDVLCRWGGEEFIILLPATDRDEAA 334

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            LA  +R  +              +T+S G+      E     + R D ALY AK++GRN
Sbjct: 335 ALAGTIRNAVAGYGFTAIE----TMTVSIGVGLILADETAEDWLRRVDSALYDAKQNGRN 390

Query: 254 RVVCFSDIENNTC 266
           +V   S+  N   
Sbjct: 391 QVAV-SETPNRMA 402


>gi|149377372|ref|ZP_01895117.1| GGDEF domain-like protein [Marinobacter algicola DG893]
 gi|149358384|gb|EDM46861.1| GGDEF domain-like protein [Marinobacter algicola DG893]
          Length = 524

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 8/162 (4%)

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  D L+G+LN           I+    Y+ +L++++ D D+FK IND+ GH  GD V+ 
Sbjct: 353 ATRDSLTGVLNRREMTRILEEEIARAKRYDRELALLWIDFDHFKAINDDHGHAAGDSVLK 412

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             S  L     +   VGR GGEEF         +EA   A  LR+++ ++   +  G ++
Sbjct: 413 AASGLLAESVRSVDSVGRFGGEEFVILLPEMDRREALETAERLRRLVCDTPQPLGHGNTV 472

Query: 217 HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +TIS G++    H E    +   AD+A+Y AK  GRN+VV 
Sbjct: 473 TMTISIGVSVFPDHGEGADALCAAADRAMYQAKADGRNQVVL 514


>gi|90022477|ref|YP_528304.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89952077|gb|ABD82092.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 346

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 76/235 (32%), Positives = 119/235 (50%), Gaps = 18/235 (7%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG------SIL 90
           +FIA  ++I  I L              +++  +L+++ I I+++ GYISG      +  
Sbjct: 112 LFIA--LYILMILLINKNRPDSINPTMEVLQAFALIVVVIQITIIGGYISGLRSKLRNRN 169

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           KEL I+  +IS ++  D L+G+ N       L +        N  + I   D+D+FK+IN
Sbjct: 170 KELNIALVKISDMANRDELTGIANRRKIFEVLDTEVKRKREPNTAIGICILDVDHFKRIN 229

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD+V+  +++++     T    GR GGEEF      +S +   I AN +R+ +
Sbjct: 230 DTYGHQAGDEVLKRIAEEVPKSLRTMDCFGRYGGEEFLLILPSTSLEGTEIKANRVREEV 289

Query: 204 ENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +  N+  G    +TIS GIAE   +E I   I RAD+ALY AK  GRN  V 
Sbjct: 290 AKLEFKNLPPGE--KVTISIGIAEYFPEEEIDATIQRADKALYEAKAHGRNCCVV 342


>gi|313497034|gb|ADR58400.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Pseudomonas putida BIRD-1]
          Length = 1276

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 15/192 (7%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            + + E   S  RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 825  TDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAERQKAWVVLMFLDLDRFK 884

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAIL 195
             IND+ GH  GD+++  ++ +L+        V R+GG+EF         +E     A  +
Sbjct: 885  PINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQPRPTREMALNRAIHV 944

Query: 196  ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
            A ++   +   +  +       +T S GIA        +S ++  AD A+Y AK+ G+N 
Sbjct: 945  AENILGSL--VRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKNN 1002

Query: 255  VVCFSDIENNTC 266
               +    N + 
Sbjct: 1003 FQFYQAEMNASA 1014


>gi|26987408|ref|NP_742833.1| sensory box protein [Pseudomonas putida KT2440]
 gi|24982066|gb|AAN66297.1|AE016258_3 sensory box protein [Pseudomonas putida KT2440]
          Length = 1276

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 15/192 (7%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            + + E   S  RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 825  TDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAERQKAWVVLMFLDLDRFK 884

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAIL 195
             IND+ GH  GD+++  ++ +L+        V R+GG+EF         +E     A  +
Sbjct: 885  PINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQPRPTREMALNRAIHV 944

Query: 196  ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
            A ++   +   +  +       +T S GIA        +S ++  AD A+Y AK+ G+N 
Sbjct: 945  AENILGSL--VRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKNN 1002

Query: 255  VVCFSDIENNTC 266
               +    N + 
Sbjct: 1003 FQFYQAEMNASA 1014


>gi|148545949|ref|YP_001266051.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
            [Pseudomonas putida F1]
 gi|148510007|gb|ABQ76867.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Pseudomonas putida F1]
          Length = 1276

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 15/192 (7%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            + + E   S  RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 825  TDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAERQKAWVVLMFLDLDRFK 884

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAIL 195
             IND+ GH  GD+++  ++ +L+        V R+GG+EF         +E     A  +
Sbjct: 885  PINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQPRPTREMALNRAIHV 944

Query: 196  ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
            A ++   +   +  +       +T S GIA        +S ++  AD A+Y AK+ G+N 
Sbjct: 945  AENILGSL--VRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKNN 1002

Query: 255  VVCFSDIENNTC 266
               +    N + 
Sbjct: 1003 FQFYQAEMNASA 1014


>gi|330961078|gb|EGH61338.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 829

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 12/203 (5%)

Query: 67  ENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
             L++  +     LL  +++  + +  L  +  R+   +  D L+GL N + F + L S 
Sbjct: 351 SWLTISAVRSKDGLLTHFVAVFADISSLKQAQARLDYQAHHDPLTGLPNRTLFENRLQSA 410

Query: 126 NEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                      +++F D+D FK IND+ GHPVGD ++  ++ +L         V R+GG+
Sbjct: 411 LLHCEESGGLGAVLFLDLDRFKHINDSLGHPVGDLLLKGIAHRLKESLRDIDTVARVGGD 470

Query: 179 EFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTI 236
           EF     G     +A  +AN L           +    + I+ S G          ++T+
Sbjct: 471 EFIVLLPGLLQPSDALTIANKLLACFNA--PFEAGEHELFISPSIGSCLFPDDGTDVATL 528

Query: 237 IYRADQALYVAKKSGRNRVVCFS 259
           +  AD A+Y +K  GRNRV  ++
Sbjct: 529 VKNADAAMYRSKAKGRNRVESYT 551


>gi|325920205|ref|ZP_08182160.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           gardneri ATCC 19865]
 gi|325549291|gb|EGD20190.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           gardneri ATCC 19865]
          Length = 571

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 11/193 (5%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SY 125
           + S+T++          L  L +    + Q S  D L+GL N      +L          
Sbjct: 372 LTSLTVAEAAAEQLSLALHNLRL-RETLRQQSIRDPLTGLYNRRYLEEALNHELARCTRR 430

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              LS++  D+D+FKQ ND  GH  GD+V+A + + L+          R GGEE      
Sbjct: 431 ALPLSVLMLDVDHFKQFNDLHGHSGGDRVLAAIGEFLLTQMRGEDICCRYGGEELTIILP 490

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERC-HKEPISTIIYRADQA 243
                 A+ +A  LR  IE  Q+ +S G S+  +T S G A    H    + ++ RAD+A
Sbjct: 491 EVDLSTASRMAEKLRAGIEALQV-MSDGVSLPKVTASFGAASFPEHAGNAAQLLRRADEA 549

Query: 244 LYVAKKSGRNRVV 256
           LY AK++GRN+V+
Sbjct: 550 LYRAKQAGRNQVI 562


>gi|302878474|ref|YP_003847038.1| diguanylate cyclase [Gallionella capsiferriformans ES-2]
 gi|302581263|gb|ADL55274.1| diguanylate cyclase [Gallionella capsiferriformans ES-2]
          Length = 315

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 95/183 (51%), Gaps = 10/183 (5%)

Query: 89  ILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           +LKE+     + +  L+  D L+GL N +  +  L             +S++F D+D FK
Sbjct: 134 LLKEITHRRQKHLFGLAHFDQLTGLPNRTLLLDRLSQGISVANRTERAISLLFIDLDGFK 193

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND++GH +GD ++  ++ +L+          R+GG+EF    L S+ + A  +AN + 
Sbjct: 194 YVNDSYGHAIGDSLLKEVATRLLSCLREGDTAARMGGDEFVVILLESNIERAVSVANRIL 253

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I+  S   +       I+ S GIAE   H + ++ ++  AD+A+Y AK SG++++  ++
Sbjct: 254 NILR-SHYELGKKDISCISASIGIAEHPDHADDVNALLTAADKAMYQAKNSGKDQISIYT 312

Query: 260 DIE 262
             +
Sbjct: 313 PPD 315


>gi|269791775|ref|YP_003316679.1| response regulator receiver modulated diguanylate cyclase
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099410|gb|ACZ18397.1| response regulator receiver modulated diguanylate cyclase
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 917

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/185 (33%), Positives = 93/185 (50%), Gaps = 11/185 (5%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIV 132
           L L  +SG+ + E+     ++  ++R D L+GLLN  A I        +       LS+ 
Sbjct: 733 LTLRVLSGTRVMEV---QRKLRFMARHDQLTGLLNRRAVIEMEEREMARSVREGGSLSVA 789

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID FK IND +GH  GD+V+  ++ ++         VGR GGEEF     G+S  +A
Sbjct: 790 MMDIDRFKAINDTYGHLAGDQVLREVARRVGSKLRVYDVVGRYGGEEFLLILPGASLGDA 849

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             L   +R  I +  + +  G  I +T S G+AE   +  +  +   ADQALY+AK SGR
Sbjct: 850 KRLCERMRSAIGSEPV-LYDGLQIPVTASFGVAEFVPQLTVDQLNNLADQALYLAKASGR 908

Query: 253 NRVVC 257
           + V  
Sbjct: 909 DAVRA 913


>gi|254516751|ref|ZP_05128810.1| response regulator [gamma proteobacterium NOR5-3]
 gi|219675174|gb|EED31541.1| response regulator [gamma proteobacterium NOR5-3]
          Length = 968

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/186 (30%), Positives = 80/186 (43%), Gaps = 11/186 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           +EL  +  R+   SRID L+G+ N       L             +SI+  DID FKQ N
Sbjct: 778 RELREALVRVEANSRIDSLTGVANRRHLEEQLNATWSMARRSGAPVSILMLDIDLFKQYN 837

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D  GH  GD  +  ++  +   +      + R GGEEF      +  + A   AN +   
Sbjct: 838 DTLGHSAGDDCLRLIAQAIKSKLLREHDMLARYGGEEFVVLLYDTDAKGAERAANRILDC 897

Query: 203 IENSQINIS-SGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFS 259
           +    +    S  S H+TIS G A    KE      +I  AD+ALY AK  GRNR    +
Sbjct: 898 VRVLDLPHPASDVSEHVTISIGCATLGEKERDDPHRLIDLADKALYQAKAQGRNRACSSN 957

Query: 260 DIENNT 265
               +T
Sbjct: 958 QESTDT 963


>gi|85374283|ref|YP_458345.1| sensory box/GGDEF family protein [Erythrobacter litoralis HTCC2594]
 gi|84787366|gb|ABC63548.1| sensory box/GGDEF family protein [Erythrobacter litoralis HTCC2594]
          Length = 909

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 60/190 (31%), Positives = 89/190 (46%), Gaps = 11/190 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           SG+ L E   S    S+L+  D L+GL N      SL          N + ++   D+D 
Sbjct: 357 SGTDLTEKRRSQEHASRLAHFDSLTGLANRHQMSQSLEKILASPKVANRECAVFLLDLDR 416

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK +ND  GHP GD ++  ++++L    G    VGRLGG+EF     G   + + + LA 
Sbjct: 417 FKHVNDTLGHPAGDALLKQVAERLESTVGNMGRVGRLGGDEFKVILPGRVPKDKLSYLAA 476

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
            + + +  SQ     G  + I +S GIA      E    +I  AD ALY AK  GR R  
Sbjct: 477 GIIRSL--SQPYSIEGQRVVIGVSIGIAISPENGESSEDVIRNADLALYAAKDGGRGRFH 534

Query: 257 CFSDIENNTC 266
            +S+  ++  
Sbjct: 535 FYSNDLHSAA 544


>gi|291616164|ref|YP_003518906.1| YddV [Pantoea ananatis LMG 20103]
 gi|291151194|gb|ADD75778.1| YddV [Pantoea ananatis LMG 20103]
          Length = 365

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 129/279 (46%), Gaps = 30/279 (10%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL------FYIGLTPFYGL 61
             ++W  H +    +  H+ +I    F  + +  V FI+ I L      F + +TP    
Sbjct: 80  LGALWAWHIQ----YRYHSVLIDDGGFLIVSLLCVFFISAIALSDYLVAFCLHITPSMLT 135

Query: 62  EYILVENLSLVIISITISL-LLGY------------ISGSILKELFISYNRISQLSRIDC 108
             +L     L +I +TI+L L+G+             +  ++ +L+      S LS +D 
Sbjct: 136 VLMLDHGQHLPLILLTIALPLIGFSLQHLMRRRSEDFTLRLMYQLYEEKESFSDLSMLDP 195

Query: 109 LSGLLNHSAFISSLGS----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           L+GL N     + L +    +     ++  DID+FK  NDN+GH +GD+ +A +S  +  
Sbjct: 196 LTGLYNRRGLKNRLDNILDNHVGSHYVLLLDIDHFKAYNDNYGHAMGDQALARVSVAIRD 255

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISA 222
              +   V R GGEEF       +   A  LA  +R+ + N +I       +  H+TISA
Sbjct: 256 AVRSRDVVTRYGGEEFLVLMTNVNASIAMKLAERIRQYVVNLEIPHLFNERVSTHVTISA 315

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           GIA   +       +  AD+ALYVAK  GRN ++ + D+
Sbjct: 316 GIA-PIYDNEFDQAVANADRALYVAKNQGRNTILAWEDL 353


>gi|254474939|ref|ZP_05088325.1| GGDEF domain/pas/pac and gaf sensor domain protein [Ruegeria sp.
           R11]
 gi|214029182|gb|EEB70017.1| GGDEF domain/pas/pac and gaf sensor domain protein [Ruegeria sp.
           R11]
          Length = 496

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/168 (34%), Positives = 81/168 (48%), Gaps = 8/168 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
            + +   S  D L+ L N   F+ +L          N   SI+ FD D FK  NDN GH 
Sbjct: 324 RDELHDQSTRDPLTRLFNRRYFLEALRAEHTMAARKNTPFSILSFDADKFKAFNDNHGHD 383

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  + D++  VF       R GGEEF+    G+ +  AA +A  LR  IE++ I 
Sbjct: 384 AGDMVLRAIGDKMQEVFRNGETPCRFGGEEFSVLLPGADQATAANMAEALRLAIEDTSIR 443

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
             +     +T+S G A    H E    ++  AD+ALY AK +GRN V 
Sbjct: 444 YGAATLPRVTVSIGTASYPDHGELPQDLLTAADRALYAAKAAGRNCVR 491


>gi|188582142|ref|YP_001925587.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium populi BJ001]
 gi|179345640|gb|ACB81052.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium populi BJ001]
          Length = 950

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 93/192 (48%), Gaps = 13/192 (6%)

Query: 83  GYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVF 133
           G+I+    + + + +  RI  ++R D L+GL N   F   L     +         + + 
Sbjct: 501 GWIATYEDVTQRYEAEARIITMARRDALTGLANRMVFGERLEEAAARLEDGSGAGFATLC 560

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEA 192
            D+D FK++ND  GHPVGD ++  ++++L         V RLGG+EFA    G+ + Q+A
Sbjct: 561 LDLDRFKEVNDTLGHPVGDGLLRSVAERLQSCLRETDLVARLGGDEFAIVQAGTHARQDA 620

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
           + LA  L    +  Q  +  G ++ + +S GI+    H      ++  AD ALY AK +G
Sbjct: 621 SALAKRLIAAFQ--QPFLLDGHTVTVGLSIGISLAPEHGTSPEKLLKSADLALYRAKATG 678

Query: 252 RNRVVCFSDIEN 263
           R     F +  +
Sbjct: 679 RGCWSFFEEEMD 690


>gi|120613376|ref|YP_973054.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
 gi|120591840|gb|ABM35280.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
          Length = 377

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 80/175 (45%), Gaps = 9/175 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           +E+    +++ + +  D L+GL N     ++L S           LS++  DID+FK+IN
Sbjct: 199 EEIRALQDQLQEQAVRDPLTGLYNRRHLDATLASEIARCGAQGLPLSLMMIDIDHFKRIN 258

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD ++  L+  L           RLGGEEF      +    A   A  LR+  
Sbjct: 259 DTHGHAAGDAMLQALAQLLQRHVRVRDLACRLGGEEFVLLLPETPLAVARERAEALREAF 318

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           E  Q+       +  T+S G+A    H      +   AD+ALY AK  GRNRVV 
Sbjct: 319 EALQVRH-DPEVLSATLSCGVAAFPQHARQPLALTASADEALYAAKMQGRNRVVV 372


>gi|113970628|ref|YP_734421.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113885312|gb|ABI39364.1| diguanylate cyclase [Shewanella sp. MR-4]
          Length = 467

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 106/241 (43%), Gaps = 7/241 (2%)

Query: 24  PHTFMIYFSI--FFSIFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISL 80
           P   ++ F +  F+    ++   +  I     G  PF     Y     +   ++S  +++
Sbjct: 226 PLLVVLSFEVTRFYLALFSSASMLFMILATAQGYGPFINATPYQTNAEMMAFVLSSALTI 285

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDID 137
               +  + L+          Q +  D LSGLLN   F+  L + N    + S+   D+D
Sbjct: 286 FGVSLQRAQLRRTERDKQTAVQEALYDPLSGLLNRRGFMPQLTNLNGPTARYSVAMLDLD 345

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK IND +GH VGD+VI  L+  +     +     RLGGEEFA        ++   +  
Sbjct: 346 NFKMINDTYGHSVGDRVIQLLAQLIHNHSRSQDIAARLGGEEFALVLRDIDAEQVYPVLE 405

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +RK      I  +   +I+ T+S G  E        ++++ AD+ALY AK  G+N +V 
Sbjct: 406 RIRKSFAEMSI-AAEEHTIYCTVSIGWVEYQQGIAGESLLHLADKALYQAKAQGKNTIVK 464

Query: 258 F 258
           +
Sbjct: 465 Y 465


>gi|117924448|ref|YP_865065.1| diguanylate cyclase [Magnetococcus sp. MC-1]
 gi|117608204|gb|ABK43659.1| diguanylate cyclase [Magnetococcus sp. MC-1]
          Length = 634

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 77/164 (46%), Gaps = 8/164 (4%)

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++GL N                   +K+ ++  D+D+FKQ+ND +GH VGD V+   S
Sbjct: 465 DPMTGLHNRRFLQECANNLCSGSQRRGKKIGLLMCDLDFFKQVNDTYGHDVGDSVLKITS 524

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L         V R GGEEF    +     E   LA  +RK IE ++  +   P +  T
Sbjct: 525 EILQNSVRQSDLVVRFGGEEFIIILVDIESDEVMGLAEKIRKQIEATEFPVPGKPPLKKT 584

Query: 220 ISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           IS GI+     E      +  AD ALY AK++GRN+ V F+   
Sbjct: 585 ISIGISVYPDDEDGFWKTLKYADVALYKAKENGRNQSVRFTKEM 628


>gi|307609096|emb|CBW98536.1| hypothetical protein LPW_03661 [Legionella pneumophila 130b]
          Length = 740

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 89/188 (47%), Gaps = 11/188 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           S   + E      ++   +  D L+ L N    I  +         +  K +I+FFD+D 
Sbjct: 296 SFRDITEQTRLKEKLEYQATHDALTNLPNRLLLIDRIEHAISSYARHKMKFAILFFDLDR 355

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK IND+  H  GD+++  ++ +L  +      + RLGG+EF       +SE++ A +A 
Sbjct: 356 FKMINDSLSHEAGDQLLCAVAKRLRSLVRKEDTLARLGGDEFVMLFQSFNSEEQIAGVAQ 415

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            + K  +  +    +   I+I +S GI+      + ++T++  AD A+Y AK  G N+  
Sbjct: 416 KILKSFQ--KPFHIAERDINIHVSIGISVYPTDGKTVNTLLSNADMAMYQAKFRGGNQFS 473

Query: 257 CFSDIENN 264
            +++  N 
Sbjct: 474 FYTEKLNK 481


>gi|288940706|ref|YP_003442946.1| GAF sensor-containing diguanylate cyclase [Allochromatium vinosum
           DSM 180]
 gi|288896078|gb|ADC61914.1| diguanylate cyclase with GAF sensor [Allochromatium vinosum DSM
           180]
          Length = 364

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 9/180 (5%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLG---SYNEKLS 130
           I  LL   + +I   L  S+  +++    D L+GL N  A        L     ++  LS
Sbjct: 170 IEGLLALAAPAIQNALRFSH--VNRQLERDPLTGLGNRRALSVQGEQWLADSVRHHHPLS 227

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D FK +ND +GHPVGD+V+  +++ L+ V  T     RLGG+EF      +  +
Sbjct: 228 MLALDLDRFKAVNDTYGHPVGDRVLCRVAETLMAVTRTADLCVRLGGDEFVVLLPETGLR 287

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
            A   A  +R  +    I   SG  I I++S G+A       +  + ++AD ALY AK++
Sbjct: 288 AALDCAERIRSALAQHCITTESGSCIAISVSIGVATLQPDMSLDQLYHQADAALYAAKQA 347


>gi|256823757|ref|YP_003147720.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Kangiella koreensis DSM 16069]
 gi|256797296|gb|ACV27952.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Kangiella koreensis DSM 16069]
          Length = 810

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 15/192 (7%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           ++  ++ E   +  +I  L+  D L+ L N       L            KL++++ D+D
Sbjct: 358 VNFHVITERKQAEQKIHNLANYDPLTQLPNRYLLRKRLLKGLADSVKNESKLALMYIDLD 417

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK+IND  GH VGD ++  ++  +     +   + R+GG+EF      +SE+EA  +A 
Sbjct: 418 RFKEINDTLGHSVGDALLQTVAKTIHKCLRSSDTLARVGGDEFTIVLPETSEKEARYIAE 477

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            + +         +   ++    S GI+    H +    +   AD A+Y AKK  RN+  
Sbjct: 478 RILQQFRT--PFKADSHTVQTGASIGISIFPDHSKKAEDLFRFADIAMYSAKKE-RNQYQ 534

Query: 257 CF----SDIENN 264
            +    S+ EN 
Sbjct: 535 LYELRHSERENR 546


>gi|172062135|ref|YP_001809787.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
 gi|171994652|gb|ACB65571.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
          Length = 452

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 67/259 (25%), Positives = 118/259 (45%), Gaps = 13/259 (5%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           L +W+ +   L +    +  +  ++   + IA +  + +  L  +  T  + + + L   
Sbjct: 196 LVVWMLNALALMAVL-VSGRLRTTLDLWLAIAVLACLTDTTLNLLS-TNRFTIGWYLARV 253

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------S 121
            S+    I + +L   ++  + + LF ++  + + S  D L+G  N S F          
Sbjct: 254 FSMFTPGILVCVLAWEVT-MLYQRLFEAHTMLIRSSARDGLTGAFNRSHFNDHFHTLFLQ 312

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEF 180
                E LS++  D+D+FK  ND FGH  GD  +  +++ L      P   V R GGEEF
Sbjct: 313 ARRQGEPLSLLMVDVDHFKAYNDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEF 372

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIY 238
           A     +  + A ++A ++R+ +    + + S P+  +++S G A     E      +I 
Sbjct: 373 AIVLPNTGARGARLVAEEVREAVLRLDLAMPSSPAGRVSVSVGCATVSADELSTPDALIE 432

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD ALY AK  GRNRVV 
Sbjct: 433 AADAALYRAKDGGRNRVVA 451


>gi|114154898|sp|Q32HJ0|YEDQ_SHIDS RecName: Full=Cellulose synthesis regulatory protein
          Length = 564

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 542 LADRRLYLAKQAGRNRV-FASD 562


>gi|83647423|ref|YP_435858.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83635466|gb|ABC31433.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 313

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/183 (33%), Positives = 93/183 (50%), Gaps = 10/183 (5%)

Query: 81  LLGYISGSILKELF--ISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSI 131
           ++  + GS++  L   + Y      +  D L+G+ N  AF   L         Y  KLS+
Sbjct: 115 VIETLLGSLIYPLRNGLRYQEAMNAALSDSLTGVANKRAFDYQLHREVSLATRYKYKLSM 174

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +FFDID+FK++ND +GH  GD ++  L+  +           R GGEEFA     +  + 
Sbjct: 175 LFFDIDHFKKVNDTYGHAAGDALLQQLAKVVQDNCRDSDLCFRFGGEEFAMLLAKTETEG 234

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A  +A  LR+ + N+      G +I  TIS G+A    +E  S  + RADQALY AK +G
Sbjct: 235 AYAIAERLREAVANTAFQH-EGHTISFTISIGVATYDGEENRSDFLERADQALYDAKHAG 293

Query: 252 RNR 254
           RN+
Sbjct: 294 RNK 296


>gi|66045350|ref|YP_235191.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63256057|gb|AAY37153.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 796

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 60/175 (34%), Positives = 87/175 (49%), Gaps = 10/175 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +L      +  LS  D L+G  N   F   +         +   LSI+  DID+FK
Sbjct: 620 SDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSIIMLDIDHFK 679

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +A  LA  LR
Sbjct: 680 RINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRGAQAYQLALSLR 739

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + + N  I    G    +T S GIA     E I  ++ RAD  +Y AK++GR+RV
Sbjct: 740 EELRNQAI---EGVDQVVTGSFGIASWREGEGIDEMLLRADSGVYAAKQAGRDRV 791


>gi|331677837|ref|ZP_08378512.1| cellulose synthesis regulatory protein [Escherichia coli H591]
 gi|331074297|gb|EGI45617.1| cellulose synthesis regulatory protein [Escherichia coli H591]
          Length = 564

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 542 LADRRLYLAKQAGRNRV-FASD 562


>gi|330877341|gb|EGH11490.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 296

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 10/225 (4%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
              + +    L P   L   + +  + + + +   + +G++S  +  +L+   N + ++S
Sbjct: 63  ALGVLISLALLNPAVNLHGNMAQIYACLPVLVIYPIFIGWMSHQVTLKLWEHRNILRKIS 122

Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           R D L+GLLNH A+   L        + +++  I   DID+FK IND +GH +GD V+  
Sbjct: 123 RTDSLTGLLNHGAWKDLLDLEYVKSQNQHQQCVIALIDIDHFKVINDTYGHLMGDTVLQN 182

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +S+ L+        +GR GG+EF      +   +A  +    R  I+    ++     + 
Sbjct: 183 ISEALMENLRDSDLIGRFGGDEFCVILPDTHLFQAREILERTRLAIDEMTYSLQ--RDLK 240

Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +++S GIA    +    S+ ++ AD+ALY+AK +GRN V    D+
Sbjct: 241 VSLSIGIAAYSPELPDASSWLHEADKALYLAKSTGRNCVASAQDM 285


>gi|300114835|ref|YP_003761410.1| response regulator receiver modulated diguanylate cyclase
           [Nitrosococcus watsonii C-113]
 gi|299540772|gb|ADJ29089.1| response regulator receiver modulated diguanylate cyclase
           [Nitrosococcus watsonii C-113]
          Length = 327

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 12/181 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQ 141
           + + L ++  ++ QL+ +D L+G+ N   F                 LS++  DID FK 
Sbjct: 144 LTRRLEMANEQLRQLTSLDDLTGIANRRQFEVTIHQEFQRAMRNKTALSLIMIDIDNFKV 203

Query: 142 INDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND +GH  GD  +  ++  L  V       + R GGEEFA     +S + A+ +A  LR
Sbjct: 204 YNDIYGHQTGDNCLRRVAAALDSVLKRPNDLLARYGGEEFAVILPETSSKGASNIAESLR 263

Query: 201 KIIENSQINIS--SGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +E  +I  S  S  ++ +T+S G+A       +  + +I  ADQALY +K +GRN+V 
Sbjct: 264 QAVEILKIPHSYASQNNLRVTVSLGVATLIPQRGDEPTKLISVADQALYQSKHAGRNQVS 323

Query: 257 C 257
            
Sbjct: 324 V 324


>gi|330890882|gb|EGH23543.1| GGDEF domain-containing protein [Pseudomonas syringae pv. mori str.
           301020]
          Length = 527

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 90/205 (43%), Gaps = 20/205 (9%)

Query: 81  LLGYISGSILKE---------LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124
           L+G+I   I  E         L      +  ++  D L+GL N   F             
Sbjct: 301 LIGHIHSRIRAEDQLLDSQAALIQLNQHLEFIASEDKLTGLANRRRFDQFLEVEFKRARR 360

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAA 183
               LS++  D D+FK+ ND++GH  GD+ +  L+  +            R GGEE A  
Sbjct: 361 ERSLLSLILIDADHFKRYNDHYGHLAGDECLVALARVVEQCIRHPGDVAARYGGEEIAVV 420

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRA 240
             G+ E     +A ++ + I + QI   + P   +T+S G+A     +      ++I  A
Sbjct: 421 LPGTDESSTRQVAENILQAIRDEQIEHPASPFGIVTVSLGVATFVGTDRQLDQRSLIELA 480

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D+ALY AK  GRNRV   S+I  +T
Sbjct: 481 DRALYAAKSQGRNRVNVASEIATST 505


>gi|297539271|ref|YP_003675040.1| diguanylate cyclase [Methylotenera sp. 301]
 gi|297258618|gb|ADI30463.1| diguanylate cyclase [Methylotenera sp. 301]
          Length = 485

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 61/243 (25%), Positives = 110/243 (45%), Gaps = 19/243 (7%)

Query: 31  FSIFFSIFIATVIFIANIFLF---YIGLTPFYGLEYILVENLSLVIISITISLL------ 81
            ++F   F   ++  A    F    I LT  +  E+I + +++ +  +  +S +      
Sbjct: 239 IAVFIVSFALALVITAGRNPFGNLSISLTILHAQEFIAILSIASMGFATLLSRIRDNERE 298

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFF 134
           L         EL +  +++  LS+ D L+G+ N  +F              N+ L++   
Sbjct: 299 LEDRVSKRTDELQLLNHKLEGLSKTDGLTGIANRRSFDDVLEIEWMRAKRANQPLALAML 358

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           DID+FK+ ND++GH  GD+ +  +S+ L      T   V R GGEEF   A   S  +A 
Sbjct: 359 DIDWFKRYNDHYGHQAGDECLRRVSNILASNLCRTGDLVARYGGEEFVFIAPAISGDQAL 418

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSG 251
            ++  + + + +  +        ++T+S G+A    +       ++  AD ALY AK+ G
Sbjct: 419 EISRKICEALHSLALPHELSTFGYVTVSVGVASITPQGSQKSDVLVKMADDALYQAKEQG 478

Query: 252 RNR 254
           RNR
Sbjct: 479 RNR 481


>gi|253997107|ref|YP_003049171.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
 gi|253983786|gb|ACT48644.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
          Length = 575

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 94/193 (48%), Gaps = 11/193 (5%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEK 128
           +T +L+      ++ ++L  +Y R+  L+  D ++GL N   F   L         +  K
Sbjct: 113 LTKALVHAQARHALNQQLVETYARLKYLAENDPMTGLSNRRYFEEKLRGEIKRAQRFESK 172

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           + ++F D+D FK IND+ GH VGD+++  ++++L+ +        RLGG+EFA       
Sbjct: 173 IGLLFLDVDNFKLINDSLGHDVGDQILQQIANRLLTLIRQGDIACRLGGDEFAIVVNDID 232

Query: 189 EQEAA-ILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYV 246
           E+ +  +LA  +   +   +  + +     I+IS GI+           ++  AD A+Y 
Sbjct: 233 EETSLGLLAQRILDCL--HEPIVLAKTQHFISISIGISTYPECAHTAEDMLKHADLAMYH 290

Query: 247 AKKSGRNRVVCFS 259
            K+ GRN    F+
Sbjct: 291 VKQHGRNGFHFFT 303


>gi|56752291|ref|YP_172992.1| hypothetical protein syc2282_c [Synechococcus elongatus PCC 6301]
 gi|56687250|dbj|BAD80472.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 1037

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 11/181 (6%)

Query: 87   GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---------SYNEKLSIVFFDID 137
             + + E      ++ Q +  D L+G+LN   FI+              +  LS+V  DID
Sbjct: 848  STDITEQKKLEQKLQQQATTDALTGILNRRQFITLAQAELNRIYRIQRDTSLSLVIIDID 907

Query: 138  YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            +FK IND++GH VGD+V+   ++             RLGG+EF      ++ ++A  + +
Sbjct: 908  HFKTINDSYGHTVGDQVLILWTNICQQNIREVDIFARLGGDEFVLMLPETNGKQAYQVMD 967

Query: 198  DLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             +R+++    +++    +I ITIS GIA    +   +   + RAD+ALY AK+ GR+R++
Sbjct: 968  RIRQLVIQQSLHLPQ-QAIAITISVGIAVWTPEILTLDQFLERADRALYQAKQQGRDRII 1026

Query: 257  C 257
             
Sbjct: 1027 L 1027


>gi|330890479|gb|EGH23140.1| GGDEF domain-containing protein [Pseudomonas syringae pv. mori str.
           301020]
          Length = 490

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 12/186 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIV 132
           L L ++    L+    + + ++ L+  D L+GL N                   ++LS++
Sbjct: 293 LWLTWLLCRELRRRHRAEDALASLAATDGLTGLDNRRQLDEAMETEWARAQRSGKQLSLL 352

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQE 191
             D+D+FK  N+  GH  GD+ +  ++  +   +      V R GGEEF      +    
Sbjct: 353 MIDVDHFKAFNERHGHQGGDEALRLIAQTISFNIRRPGDRVARYGGEEFVVVLPETDLPG 412

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKK 249
           A ++A  +RK  E+       G    IT+S G+        + +      AD+ALY AK 
Sbjct: 413 AMMIAEQIRKAAESLPPFP--GAQQPITVSIGVVSEMVLQGDKLEAFFGIADKALYQAKH 470

Query: 250 SGRNRV 255
            GRNRV
Sbjct: 471 KGRNRV 476


>gi|298292317|ref|YP_003694256.1| diguanylate cyclase with GAF sensor [Starkeya novella DSM 506]
 gi|296928828|gb|ADH89637.1| diguanylate cyclase with GAF sensor [Starkeya novella DSM 506]
          Length = 340

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 60/180 (33%), Positives = 88/180 (48%), Gaps = 11/180 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           EL      +++L+R+D L+GL N   F   L    ++        S++  DID FK +ND
Sbjct: 161 ELNTLNRELTRLTRVDALTGLANRRCFDEELARAGQRCRRTGEAFSVMLIDIDRFKALND 220

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            FGH  GD+ +  +   L          + R GGEEFAA   GS E  A  +A  +R  +
Sbjct: 221 GFGHQAGDEALRRVGAALGGMAARQDDTLARYGGEEFAAILCGSDESGALSVAGRIRSAL 280

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             + I      +  +T+S GI  R   E  +  +I +AD ALY AK+ GR+ VVC  D +
Sbjct: 281 AQAAIVHP--VTGKVTVSIGIVSRPASEIDLDRMIAQADAALYEAKRRGRDLVVCHEDPD 338


>gi|317154417|ref|YP_004122465.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
 gi|316944668|gb|ADU63719.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
          Length = 326

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 11/170 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ ++S +D L+GL N   F  +L       G  +  L ++  DID+FK  ND  GH  
Sbjct: 145 RKLERMSNLDSLTGLANRRCFDDTLVKEWVRNGRADAHLGLIMIDIDHFKHYNDALGHVD 204

Query: 151 GDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD  +  +++ +   V      V R GGEEFA    G+    A  +A+++   +  + I 
Sbjct: 205 GDTCLRRVAEAIKGVVHRPGDMVARYGGEEFAVILPGTDYTGAMAVADNIHASVAQTSIE 264

Query: 210 ISSGP-SIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVV 256
                 S  +T+S G++            +I  AD+ALY AK++GRNR  
Sbjct: 265 HPDSAVSCVVTVSIGVSSGIPTCGSTPEQLIQAADRALYEAKEAGRNRTR 314


>gi|229181661|ref|ZP_04308986.1| GGDEF domain protein [Bacillus cereus 172560W]
 gi|228601857|gb|EEK59353.1| GGDEF domain protein [Bacillus cereus 172560W]
          Length = 196

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/194 (28%), Positives = 93/194 (47%), Gaps = 9/194 (4%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125
           + L +IS  I+  + +IS + + +    + ++ Q + ID L+GL N   F   +  +   
Sbjct: 1   MGLYLISSIITGYITFISANYVLQSNELFQKMKQYATIDALTGLGNVRQFDLEMNRHISN 60

Query: 126 ----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
               N+   ++  DID+FK +ND +GHP GD+V+  +   L      P    R GGEEFA
Sbjct: 61  KNMKNDSFCLLLIDIDHFKYVNDTYGHPAGDEVLKQVGCILRETSQFPDLAFRKGGEEFA 120

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                       +    +R  +E+    +     I IT+S G++E   +      I  AD
Sbjct: 121 LLIPNKGLAYGILTGEQIRTAVESHSFQLLDETKIKITVSVGVSEY--EGSPEQFIQAAD 178

Query: 242 QALYVAKKSGRNRV 255
            ALY +K++GRN+V
Sbjct: 179 DALYYSKRNGRNKV 192


>gi|307155019|ref|YP_003890403.1| PAS/PAC sensors-containing diguanylate cyclase/phosphodiesterase
            [Cyanothece sp. PCC 7822]
 gi|306985247|gb|ADN17128.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Cyanothece sp. PCC 7822]
          Length = 1342

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 11/187 (5%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
             + E       ++  +  D L+GL N    I  L           ++++++F D+D+FK 
Sbjct: 890  DITERKAQQTTLTYQANYDALTGLPNRFLAIDRLKQAILQADRQKKRVAVMFIDLDHFKD 949

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLR 200
            +ND  GH  GD ++  +S +L         V RLGG+EF        E     ++A+ + 
Sbjct: 950  VNDTLGHEYGDLLLQKVSQRLKQCLRKSDTVARLGGDEFLIILPNLRETHHCKLIASKIL 1009

Query: 201  KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
              +E    N+ +     I+ S GI         +S ++  AD A+Y+ K+ GRN    ++
Sbjct: 1010 SSLEK-PFNLLT-EEAFISASIGITLYPDDGNDVSVLMRNADAAMYLGKRGGRNDFKFYT 1067

Query: 260  DIENNTC 266
               N   
Sbjct: 1068 MGMNEEA 1074


>gi|330969162|gb|EGH69228.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 628

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
            S L+E       ++ ++  D L+ L N +  ++ L        S  E+ +++F D+D F
Sbjct: 180 QSRLEERERMSEELTYIAFHDELTSLFNRAYLMNELTTAFETRKSRYERATVLFLDLDGF 239

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
           K +ND+ GH  GD+++  ++++L     +   + R+GG+EFA   +G  + + A  +A  
Sbjct: 240 KVVNDSMGHLAGDQLLKGVANRLQTCVRSNDVLARIGGDEFAILLMGKDQPETAVKMAER 299

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           +   + N+ I I  G  I I+ S GI            ++  AD A+Y AKK GR R   
Sbjct: 300 IVSQL-NTAIQI-EGQDIFISCSIGIVSAGESHTKPEELLRDADVAMYSAKKQGRGRWSI 357

Query: 258 FSDIENNTC 266
           F+       
Sbjct: 358 FNTSMREAA 366


>gi|261254626|ref|ZP_05947159.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str.
           FRIK966]
          Length = 564

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 542 LADRRLYLAKQAGRNRV-FASD 562


>gi|91790100|ref|YP_551052.1| diguanylate cyclase/phosphodiesterase [Polaromonas sp. JS666]
 gi|91699325|gb|ABE46154.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Polaromonas sp. JS666]
          Length = 861

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 87/189 (46%), Gaps = 12/189 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
           G  +    ++ + I  L+  D L+ L N    +  L            + +++F D+D F
Sbjct: 410 GRDITRRKVAESEIMHLAFYDPLTQLPNRQLLMDRLQQALAHPPQLPREGALMFIDMDNF 469

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILAN 197
           K +ND  GH  GD ++  ++++L     T   V RLGG+EF      LG   +EA   A 
Sbjct: 470 KTLNDTLGHHKGDLLLQQVAERLTGCVRTADTVARLGGDEFVVMLENLGHDPREAGARAR 529

Query: 198 DLRKII--ENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNR 254
            + + I    S+  + +G   + T S G+     + + I  ++ +AD A+Y AK +GRN 
Sbjct: 530 AVGEQILAALSEPYLLAGYQHYSTCSIGVTSFNQNHDSIGDLLKQADLAMYQAKTAGRNT 589

Query: 255 VVCFSDIEN 263
           +  F  +  
Sbjct: 590 LCFFDPVMQ 598


>gi|83311044|ref|YP_421308.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945885|dbj|BAE50749.1| Response regulator [Magnetospirillum magneticum AMB-1]
          Length = 317

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 96/212 (45%), Gaps = 19/212 (8%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN-------RISQLSRIDCLS 110
           +Y L   L++      +  ++++ +G +  +   EL  +Y         + + S  D L+
Sbjct: 109 WYQLSETLIDWFDGRRVKHSVAVDIGALKNA-QNELSEAYAMLALKSVELEKASITDALT 167

Query: 111 GLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           GL N                 Y E +S++  D+D+FK +ND  GH VGD+V+  ++  L 
Sbjct: 168 GLFNRRRLDESFAHELDRAQRYAEPVSLIISDVDHFKSVNDIHGHHVGDEVLQAMAGLLR 227

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   VGR GGEEF      +    A  LA  LR  I ++Q     G S   + S G
Sbjct: 228 HGVRALDVVGRWGGEEFLIICPNTDLDGATALAEKLRAAIASAQFP-GIGTS---SASFG 283

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +A+    E     + RAD ALY AK +GRNR+
Sbjct: 284 VAQYQDGESFKDTVARADTALYRAKVNGRNRI 315


>gi|330465629|ref|YP_004403372.1| diguanylate cyclase [Verrucosispora maris AB-18-032]
 gi|328808600|gb|AEB42772.1| diguanylate cyclase [Verrucosispora maris AB-18-032]
          Length = 714

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 14/196 (7%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------L 129
           T+    G+++ ++  +    +    +LS  D L+GL N+     SL    E+       +
Sbjct: 463 TLQTFAGHVAVAV--DNVRVHEEAQRLSLTDPLTGLWNYRYLRESLRREVERANRFGRMV 520

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  D+D FK+IND +GH  GD V+A  + ++           R GGEEF      +  
Sbjct: 521 SVLVLDLDRFKKINDTYGHAAGDTVLAEFARRVRGEIREVDLAFRQGGEEFVVLLPETDA 580

Query: 190 QEAAILANDLRKIIENSQINISSG----PSIHITISAGIAERC-HKEPISTIIYRADQAL 244
           + A I+A  L     N+ + +        SI  T+S GIA    H E    ++  AD+AL
Sbjct: 581 RGATIVAERLGAATRNTPVTVLGHAGVQESIGFTVSIGIAVYPDHAETGLRVLEAADEAL 640

Query: 245 YVAKKSGRNRVVCFSD 260
           Y AK +GR+      D
Sbjct: 641 YAAKAAGRDTWRVAQD 656


>gi|332163160|ref|YP_004299737.1| cell signaling regulator [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667390|gb|ADZ44034.1| cell signaling regulator [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 523

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/162 (32%), Positives = 81/162 (50%), Gaps = 7/162 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++   ++ D ++GL N     ++L       +  S++  DID+FK+IND++GH VGD+VI
Sbjct: 365 KLRFEAQTDPMTGLYNRRGLATTLEPIVQLGQHFSVIALDIDHFKEINDSYGHDVGDEVI 424

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L+ Q+         + R GGEEF      +    +  +A  LR  +E   +       
Sbjct: 425 KQLAIQIRESSRDSDILCRSGGEEFLMLLPSTVPDVSTQVAKRLRHNVEMMVMANIR--- 481

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             ITIS G+A    +      + RAD+ALY AK+ GRNRV  
Sbjct: 482 -PITISLGVAFWNGEGTPEDALKRADEALYRAKQQGRNRVEV 522


>gi|308187730|ref|YP_003931861.1| Inner membrane protein ycdT [Pantoea vagans C9-1]
 gi|308058240|gb|ADO10412.1| Inner membrane protein ycdT [Pantoea vagans C9-1]
          Length = 521

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/166 (33%), Positives = 86/166 (51%), Gaps = 9/166 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+S  ++ D L+ LLN     + L  Y    +  S++  DID+FK +ND++GH VGD+VI
Sbjct: 359 RLSSEAQTDPLTQLLNRRGLNAVLEYYRTLRQPFSVLALDIDHFKNVNDSWGHDVGDRVI 418

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L         V R GGEEF     G++  EA I+A  +R  I  + +       
Sbjct: 419 QQVASTLRASARQSDVVCRNGGEEFLMLLPGTALDEAQIIAERVRLGIAEAWLTDVG--- 475

Query: 216 IHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFS 259
             IT+S G+A     +   + T + +AD ALY AK +GRN V+  +
Sbjct: 476 -RITLSIGVAAWNGTQDAGLETSLKQADAALYAAKNAGRNCVIVAT 520


>gi|304396817|ref|ZP_07378697.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pantoea sp. aB]
 gi|304355613|gb|EFM19980.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pantoea sp. aB]
          Length = 949

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 87/187 (46%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + +   +  RI  ++  D L+ L N   F   L       G    + + +  D+D FK 
Sbjct: 515 DVTDQRAADARIHHMAHHDNLTSLPNRILFRQRLSEALRTAGQMQRQTAALCLDLDNFKN 574

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           +ND  GH +GD+++  ++ +L         + R+GG+EFA      +   EA+ +A  L 
Sbjct: 575 VNDALGHQIGDELLRSVAKRLRNALRDQDTLARIGGDEFAIVLPHVAGNDEASAVAQRLI 634

Query: 201 KIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + I    +NI  G ++ + +S GIA           ++  AD ALY AK++GRNR   F+
Sbjct: 635 EAIR-PPVNI-EGHNLSVGLSVGIALSTTITNTPEQLLRCADMALYEAKRNGRNRYEHFT 692

Query: 260 DIENNTC 266
              ++  
Sbjct: 693 LEMDDVA 699


>gi|218689950|ref|YP_002398162.1| putative diguanylate cyclase [Escherichia coli ED1a]
 gi|218427514|emb|CAR08409.2| putative diguanylate cyclase [Escherichia coli ED1a]
          Length = 564

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 542 LADRRLYLAKQAGRNRV-FASD 562


>gi|218249057|ref|YP_002374428.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Cyanothece sp.
           PCC 8801]
 gi|218169535|gb|ACK68272.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8801]
          Length = 726

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 12/192 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDI 136
           ++   + E   +  ++   +  D L+GL N SA +  L    E+         +++F D+
Sbjct: 270 VNCHDITERHQTAEQLRYDASHDKLTGLANRSALLKQLKRAIEQKKRRKEDHFALLFLDL 329

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAIL 195
           D FK IND  GH +GD+++  ++ +L         + R GG+EF        +QE A ++
Sbjct: 330 DRFKVINDGLGHLMGDQLLKEMAKRLQRCHREGDLLARFGGDEFVFFLKEIRQQEQAIVV 389

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  + + +   +  I +   + I+ S GI     H +    ++  AD A+Y AK  G+  
Sbjct: 390 AERIHQALR--EPFILNHQEVFISASIGITLSADHYDSPEQMLRDADTAMYWAKARGQGG 447

Query: 255 VVCFSDIENNTC 266
              F+   + + 
Sbjct: 448 HTIFAPTMHLSA 459


>gi|120602911|ref|YP_967311.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Desulfovibrio vulgaris DP4]
 gi|120563140|gb|ABM28884.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris DP4]
          Length = 926

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 14/192 (7%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------L 129
           ++ +L  +    + E   +  R+++++  D L+GL N   F+  + +   +         
Sbjct: 469 VAFVLAQV--EDITEQQQTEARLTRMAFHDALTGLPNRVLFLDRVETALRRARRHETYHF 526

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++F D+D FK +ND+ GH  GD+++   + +L         + R GG+EFA      S+
Sbjct: 527 AVLFLDLDRFKVVNDSLGHKAGDELLRQFARRLEPCLREVDTMARFGGDEFAILLDDMSD 586

Query: 190 -QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVA 247
             E+  +   L+  +   Q  +  G  ++   S G   R         I+  AD A+Y A
Sbjct: 587 VDESVNIIERLQAALR--QPFLVQGMEVYTGASIGAVLRARDYTQAEDILRDADIAMYRA 644

Query: 248 KKSGRNRVVCFS 259
           K SG+ R V F 
Sbjct: 645 KDSGKGRFVVFE 656


>gi|24113329|ref|NP_707839.1| hypothetical protein SF2000 [Shigella flexneri 2a str. 301]
 gi|110805923|ref|YP_689443.1| hypothetical protein SFV_1998 [Shigella flexneri 5 str. 8401]
 gi|24052340|gb|AAN43546.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|110615471|gb|ABF04138.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|313650178|gb|EFS14591.1| cellulose synthesis regulatory protein [Shigella flexneri 2a str.
           2457T]
 gi|332757308|gb|EGJ87645.1| cellulose synthesis regulatory protein [Shigella flexneri 2747-71]
 gi|332757522|gb|EGJ87857.1| cellulose synthesis regulatory protein [Shigella flexneri K-671]
 gi|332766694|gb|EGJ96898.1| diguanylate cyclase domain protein [Shigella flexneri 2930-71]
 gi|333003334|gb|EGK22880.1| cellulose synthesis regulatory protein [Shigella flexneri K-218]
 gi|333017542|gb|EGK36854.1| cellulose synthesis regulatory protein [Shigella flexneri K-304]
          Length = 494

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LLL  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 292 LTLLWALFTTMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 351

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 352 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 411

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G++  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 412 CVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 471

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 472 LADRRLYLAKQAGRNRV-FASD 492


>gi|26988822|ref|NP_744247.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida KT2440]
 gi|24983624|gb|AAN67711.1|AE016402_3 sensory box protein [Pseudomonas putida KT2440]
          Length = 800

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 14/211 (6%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           Y    P  GL ++  E    V      +L  GY++   + +L      +  LS  D L+G
Sbjct: 592 YRVCLPRAGLRWVRGEATPEVGEQ-GCTLWHGYLT--DISDLKGVEEELRALSVTDSLTG 648

Query: 112 LLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           + N   F   L             L+++  DID+FK+IND FGH VGD+V+  L  ++  
Sbjct: 649 IHNRRYFQERLKIELERAQRDGLPLAVIMLDIDHFKRINDRFGHAVGDRVLRSLCQRIAQ 708

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                    RLGGEEF     GS   +A +LA +L + + N  +         +T S G+
Sbjct: 709 RLRRTDVFCRLGGEEFMVLCPGSDANQARLLALELWQGVRNVPVEGVG----QVTASFGV 764

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A     E    ++ RAD  +Y AK++GR+RV
Sbjct: 765 AGWRSGEGADALLLRADAGVYAAKQAGRDRV 795


>gi|16331924|ref|NP_442652.1| PleD-like-protein [Synechocystis sp. PCC 6803]
 gi|1001841|dbj|BAA10723.1| sll0779 [Synechocystis sp. PCC 6803]
          Length = 884

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 11/181 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQIN 143
           ++L      + +L++ID L+G+ N   F  +L           E L++V  DIDYFK  N
Sbjct: 693 EKLQEVNIELERLTQIDGLTGVYNRRFFDQALEREWQIAFRETESLTLVMLDIDYFKLYN 752

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D  GH  GD  +  ++  L   V  T   V R GGEEFA     +    A I+A  ++ +
Sbjct: 753 DTLGHQAGDHCLRIVAAILQESVHRTSDLVARYGGEEFALILPRTDLSGAVIVAQRIKTL 812

Query: 203 IENSQINISSGP-SIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++   I+  +   + ++T+S GI  A       +++ +  AD ALY AKK GRN      
Sbjct: 813 MDAKAISHPTSEIANYVTVSIGIHCAVPRPGLSLASWVKCADDALYQAKKRGRNGYFVLE 872

Query: 260 D 260
           D
Sbjct: 873 D 873


>gi|313683553|ref|YP_004061291.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sulfuricurvum kujiense DSM 16994]
 gi|313156413|gb|ADR35091.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sulfuricurvum kujiense DSM 16994]
          Length = 693

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/251 (23%), Positives = 106/251 (42%), Gaps = 23/251 (9%)

Query: 37  IFIATVIFIANIFLFYI---------GLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           +FIA  +FI       +         G+   +  E+   E  +L     T+   +     
Sbjct: 188 LFIAIRLFILKPLSSMVRVISNSDDDGIPLSFVPEFKAREIFTLASTMNTMIKSIRAFKI 247

Query: 88  SILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDID 137
           ++L++   L    N +   +  D L+GL N   F   L          N +++++F D+D
Sbjct: 248 ALLEQHNQLRAQKNALQYQATHDALTGLANRVLFSERLEYAIEKSKIRNTRMALLFVDLD 307

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA 196
           +FK+IND+ GH  GDKV+  ++ +L         + R GG+EF        + +E ++LA
Sbjct: 308 HFKEINDSLGHEAGDKVLTIVTQRLKHTIDKEESLARFGGDEFTVIIEELQNLEEVSLLA 367

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
           + +  ++            +++  S GI+      +    ++  AD A+Y AK  GRN V
Sbjct: 368 DKILNVL--LAPIAVDHHELYVGCSIGISLYPDNGDTTQDLLKYADAAMYAAKNEGRNNV 425

Query: 256 VCFSDIENNTC 266
             +S       
Sbjct: 426 RYYSSEMTTRA 436


>gi|300920176|ref|ZP_07136625.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
 gi|300412798|gb|EFJ96108.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
          Length = 558

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 536 LADRRLYLAKQAGRNRV-FASD 556


>gi|297562365|ref|YP_003681339.1| diguanylate cyclase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296846813|gb|ADH68833.1| diguanylate cyclase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 425

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 118/242 (48%), Gaps = 18/242 (7%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL-------VIISITISLLLG 83
           F++  ++ +A    I++       L P +  E ++V+ + L       ++  +++ LL+ 
Sbjct: 152 FTVLNNLLVAVAARISSGPGHT--LRPMWDREALIVDAVELCVGVTVAILAHLSLFLLVI 209

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136
            +   +L +  + Y ++   +R D  +GLLN   +       I+   S   + +++  DI
Sbjct: 210 AVPPVLLLQRSLMYQQLQMAARTDPKTGLLNAPTWEQEASVEIARARSSRGRAAVLIIDI 269

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK++NDN GH  GD+V+  ++  +         +GR GGEEF     GS   EA   A
Sbjct: 270 DHFKRVNDNHGHLFGDQVLLGVATTIAQQLRQSDLLGRFGGEEFVVLLPGSDTAEAWRAA 329

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255
             LR  +   +I +   P + ITIS G A    H   +  ++  AD ALY AK++GRNRV
Sbjct: 330 ERLRSQVGRMEIAVDDVP-VSITISIGAAVIGDHGNDLVELLTAADLALYRAKETGRNRV 388

Query: 256 VC 257
             
Sbjct: 389 CL 390


>gi|257091778|ref|YP_003165419.1| PAS/PAC sensor-containing diguanylate cyclase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044302|gb|ACV33490.1| diguanylate cyclase with PAS/PAC sensor [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 480

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 11/179 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
             + E      ++   +R D L+GL N       L             +++ F D+D+FK
Sbjct: 287 QDISEQKRYEAQLEDQARQDLLTGLANRRVLEERLKQALAQAARDGRVVAVAFIDLDHFK 346

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH  GD ++  L+ +L  +      V R+GG+EF      S+ + A  +   +R
Sbjct: 347 PINDEMGHAAGDALLRELATRLTSMVRDVDTVARVGGDEFVVVL--SAPESAEAVEGVIR 404

Query: 201 KIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +II+     ++ +G  + +  S GIA    H    + ++  AD A+Y+AK +GRN    
Sbjct: 405 RIIDAVGRPVTIAGREVQVGCSVGIALYPDHGTDQAGLLRDADTAMYIAKAAGRNGYHV 463


>gi|119898976|ref|YP_934189.1| GGDEF/EAL/PAS-domain-containing protein [Azoarcus sp. BH72]
 gi|119671389|emb|CAL95302.1| GGDEF/EAL/PAS-domain containing protein [Azoarcus sp. BH72]
          Length = 691

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 11/188 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           +  ++  L    +R  QL+  D L+GL N   F       +S     +    ++F D+D 
Sbjct: 240 NQRLIDRLRDERSRAYQLASHDHLTGLPNRLLFTELANSHLSRARRSHAPFVMMFLDLDR 299

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAN 197
           FK+IND  GH VGD ++  ++ +L         V RLGG+EF           +A+ +A 
Sbjct: 300 FKRINDTLGHRVGDLLLQEVALRLRQTVRETDIVARLGGDEFVLLLTELDALDDASRVAR 359

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            L + I   Q  +  G  I +  S GIA        +  ++  AD A+Y AK+SG  R  
Sbjct: 360 KLIEAI--GQPMVLDGHEIEMRPSVGIAIHPRDGMDVEAMMRNADSAMYEAKRSGSGRFH 417

Query: 257 CFSDIENN 264
            +    N+
Sbjct: 418 YYDPSLNS 425


>gi|46579601|ref|YP_010409.1| sensory box protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|46449016|gb|AAS95668.1| sensory box/GGDEF domain/EAL domain protein [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311233405|gb|ADP86259.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Desulfovibrio vulgaris RCH1]
          Length = 926

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 14/192 (7%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------L 129
           ++ +L  +    + E   +  R+++++  D L+GL N   F+  + +   +         
Sbjct: 469 VAFVLAQV--EDITEQQQTEARLTRMAFHDALTGLPNRVLFLDRVETALRRARRHETYHF 526

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++F D+D FK +ND+ GH  GD+++   + +L         + R GG+EFA      S+
Sbjct: 527 AVLFLDLDRFKVVNDSLGHKAGDELLRQFARRLEPCLREVDTMARFGGDEFAILLDDMSD 586

Query: 190 -QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVA 247
             E+  +   L+  +   Q  +  G  ++   S G   R         I+  AD A+Y A
Sbjct: 587 VDESVNIIERLQAALR--QPFLVQGMEVYTGASIGAVLRARDYTQAEDILRDADIAMYRA 644

Query: 248 KKSGRNRVVCFS 259
           K SG+ R V F 
Sbjct: 645 KDSGKGRFVVFE 656


>gi|115361086|ref|YP_778223.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
 gi|115286414|gb|ABI91889.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
          Length = 506

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 12/190 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFD 135
           ++    L++       ++ L+R D L+GL N  A  ++L    E+L        S++F D
Sbjct: 312 WLLAFALRDNLRKQTLLTDLTRTDPLTGLHNRRALDAALADEWERLQRGSDGSLSVLFID 371

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
            D+FKQ ND +GH  GD  + FL++ +            R GGEEF A    + E+ A  
Sbjct: 372 ADHFKQYNDRYGHAQGDTALRFLAECIRAHTRRRGDLAARYGGEEFVAVLPDTDERGAQQ 431

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGR 252
           +A  +R  +E +Q++         T+S G A      P S   + ++AD ALY AK+ GR
Sbjct: 432 VAEAIRHAVERNQLDGFDATMPAFTVSIGCATGHRARPPSMHALTHQADLALYAAKRQGR 491

Query: 253 NRVVCFSDIE 262
           NRV   +D+E
Sbjct: 492 NRVCV-ADVE 500


>gi|332764257|gb|EGJ94493.1| diguanylate cyclase domain protein [Shigella flexneri K-671]
 gi|333022038|gb|EGK41283.1| diguanylate cyclase domain protein [Shigella flexneri K-304]
          Length = 371

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   L+ G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVVYPLMFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      +R+ +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVREGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|226310278|ref|YP_002770172.1| hypothetical protein BBR47_06910 [Brevibacillus brevis NBRC 100599]
 gi|226093226|dbj|BAH41668.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 306

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 11/183 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
             + E     ++++ ++  D L+GL N       L           E ++ ++ D D FK
Sbjct: 126 RDVTERTNLESQLAYMAYHDVLTGLPNRRLLSEKLQQALRAAQSKEEMVAALYLDCDRFK 185

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
           +IND +GH  GD  +  L+ +L         V RLGG+EF     G  SE++   +AN +
Sbjct: 186 EINDTWGHDTGDLFLQMLATRLKSSVRDGDIVARLGGDEFVIVLTGIHSERQVEKIANRI 245

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
             ++   +  +    +I  + S GIA           ++  AD+ALY AKK+GRNR   F
Sbjct: 246 --LLATQEPWMIEDRTIPFSTSIGIALYPASASEAEQLLSNADKALYQAKKTGRNRFFFF 303

Query: 259 SDI 261
             I
Sbjct: 304 DPI 306


>gi|157373575|ref|YP_001472175.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella sediminis HAW-EB3]
 gi|157315949|gb|ABV35047.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella sediminis HAW-EB3]
          Length = 1485

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 19/226 (8%)

Query: 58   FYGLEYILVENLSLVIISITISLLLG-------YIS-GSILKELFISYNRISQLSRIDCL 109
            + G    +  N S   + + +S +LG       Y++  S + E   +   + +L+  D L
Sbjct: 1002 WTGEREFVCTNGSSCPVWLNVSTMLGGKGDITHYVAVFSDITERKRTEADLRRLANYDVL 1061

Query: 110  SGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
            +GL N S F       I       EKL+++F D+D FK +ND++GH +GD ++   + +L
Sbjct: 1062 TGLPNRSLFSTRLAQSIHRAEHSGEKLALIFLDLDRFKHVNDSYGHSMGDALLVEAASRL 1121

Query: 163  VVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                     + R GG+EF      +    +   +  +L   IE        G    I+ S
Sbjct: 1122 QSCISEEHTLCRFGGDEFVLLIRDADNIDKINHVCTELLVQIEA--PFELFGREFFISTS 1179

Query: 222  AGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             G++           +I  ADQA+Y AK+ GR     FS   N   
Sbjct: 1180 IGVSLWPDDTRQPEVLIKNADQAMYHAKEEGRGNFQYFSSERNAEA 1225


>gi|238798257|ref|ZP_04641742.1| Predicted diguanylate cyclase [Yersinia mollaretii ATCC 43969]
 gi|238717895|gb|EEQ09726.1| Predicted diguanylate cyclase [Yersinia mollaretii ATCC 43969]
          Length = 366

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 119/259 (45%), Gaps = 24/259 (9%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYIL--VENLSLVIISITISLL----- 81
           +  S+F   FI+T+    N   F +   P       L   +N+  +I ++ + L+     
Sbjct: 108 LLLSLFTIFFISTIALSDNFIAFCLHTAPATLTVIFLDDFQNIFRIIFTLMLPLIGFSLH 167

Query: 82  ------LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSI 131
                     +  ++  L+    + S LS ID L+ L N     + L +   +      +
Sbjct: 168 HLMSRRSDDFTRKLVARLYNEREKFSDLSMIDPLTSLYNRRGLENKLETLLAQSPGNHYV 227

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK  NDN+GH +GD+ +  ++  +     +   V R GGEEF       SE+ 
Sbjct: 228 LLLDIDHFKAYNDNYGHTMGDQALVRVAAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEY 287

Query: 192 AAILANDLRKIIENSQINISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           A+ LA  +R+ +    I       +   +T+SAGI+     +  S++   AD+ALY AKK
Sbjct: 288 ASQLAERVRQRVLGLDIPHVFNHKVSTTVTLSAGISPLQAYDLASSL-KAADEALYRAKK 346

Query: 250 SGRNRVVC----FSDIENN 264
            GRN+V      FS++E++
Sbjct: 347 DGRNKVAFAGKKFSNVESS 365


>gi|257058834|ref|YP_003136722.1| diguanylate cyclase [Cyanothece sp. PCC 8802]
 gi|256589000|gb|ACU99886.1| diguanylate cyclase [Cyanothece sp. PCC 8802]
          Length = 494

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 79/168 (47%), Gaps = 11/168 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
             + Q +  D L+GL N      SL    E+       L I+  D+D+FK +ND FGH  
Sbjct: 319 ETLKQQNIRDALTGLYNRRYLEESLKKELERAKRKERSLGIIMIDVDHFKNVNDTFGHDK 378

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  L   L           R GGEE       +S +     A  LR+ ++N  +++
Sbjct: 379 GDQVLKKLGGFLQRHIRGSDIACRYGGEELTLILPEASLENTRQRAEQLRQAVKNLDLDL 438

Query: 211 SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
                  +TIS GIA    H      ++  ADQALY AK+ GR+RV+C
Sbjct: 439 CDH---TLTISVGIACFPEHGYSGKALLKTADQALYQAKQQGRDRVIC 483


>gi|116329620|ref|YP_799339.1| GGDEF family protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116122513|gb|ABJ80406.1| GGDEF family protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 535

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 103/206 (50%), Gaps = 14/206 (6%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
            EYI+    +L+   + +     +I   +  +L  S N++++L   D L+G+ N   F+ 
Sbjct: 326 FEYIIYIIKNLLPFWVLV--FTFFIVLILYVKLRSSMNQVAKLIHTDPLTGIWNRRGFLK 383

Query: 121 SLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                      + +  +I+  DID+FKQ+ND FGH  GDK +  ++  L         V 
Sbjct: 384 LTQRSLTIGNRHGKDWTILLVDIDHFKQVNDKFGHDTGDKTLIKVAQVLSRSIRQTDAVC 443

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEFA    G  ++ +  +A DLRK +EN Q+ +  G    +T+S G+++      +
Sbjct: 444 RWGGEEFAIFLFGVGQKASTDIAEDLRKEVEN-QVRLDDGN--PVTLSIGVSQ--GTLDL 498

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
                 ADQALY AK SGRNRV  F 
Sbjct: 499 EEAFVNADQALYRAKSSGRNRVCAFD 524


>gi|330942545|gb|EGH45127.1| hypothetical protein PSYPI_23427 [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 389

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 60/184 (32%), Positives = 89/184 (48%), Gaps = 11/184 (5%)

Query: 82  LGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSI 131
           L     S+ +E            Q + ID L+GL N +A+   L     +       L +
Sbjct: 204 LAARVASMEQEALGFRTHLEEQRQKALIDPLTGLPNRAAWGERLEQEMARWQEEKNSLLV 263

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK+IND +GH  GDKV+  +++ L        F+ R GGEEF      +S   
Sbjct: 264 CILDLDHFKRINDGYGHLAGDKVLKIVANVLSKRLRADDFMARFGGEEFVMLLPATSLAA 323

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              L ++LR  +E+   +   G  + IT+S G+      E   T I RADQALY AK++G
Sbjct: 324 GLTLLDELRAAVESCPFHFK-GERVTITVSIGLTAFRPSEKSDTAIKRADQALYKAKENG 382

Query: 252 RNRV 255
           RNR+
Sbjct: 383 RNRI 386


>gi|110804408|ref|YP_687928.1| diguanylate cyclase AdrA [Shigella flexneri 5 str. 8401]
 gi|110613956|gb|ABF02623.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 371

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   L+ G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVVYPLMFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      +R+ +   ++
Sbjct: 262 DVGDEAIVVLTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVREGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|83646582|ref|YP_435017.1| FOG EAL domain-containing protein [Hahella chejuensis KCTC 2396]
 gi|83634625|gb|ABC30592.1| FOG: EAL domain [Hahella chejuensis KCTC 2396]
          Length = 913

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           S +  +     ++  L+  D L+GL N   F       +        +++++F D+D FK
Sbjct: 451 SDISVIKEKEKQLRHLANHDSLTGLPNRLLFFNSLENSLERARRRRMEVALMFIDLDRFK 510

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND  GH  GD ++  ++ +L+        V RLGG+EF  +    S+ ++AA  A  L
Sbjct: 511 IINDTMGHEAGDILLKTVARRLLEAVRGEDMVARLGGDEFTISLEELSNTEDAAAKAGKL 570

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            + I   Q     G  I  + S GIA   H  +    +   AD A+Y AK+  RN    +
Sbjct: 571 IETIR--QPVHIGGHEIVCSASIGIAIFPHDADNAQNLARAADAAMYRAKELHRNTFEFY 628

Query: 259 S 259
           +
Sbjct: 629 T 629


>gi|56750401|ref|YP_171102.1| hypothetical protein syc0392_d [Synechococcus elongatus PCC 6301]
 gi|56685360|dbj|BAD78582.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 1059

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 12/214 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           YI  E L+  I+     ++    +   + +     N++   +  D L+GL N +  I  L
Sbjct: 590 YIWFETLTKPIMDDQGVVIGLQTTSRDVTQRIEIQNQLQYDACHDSLTGLANRNLLIERL 649

Query: 123 GS--------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
                      N K +++F D+D FK IND+ GH  GD+++  ++ +L  +  +     R
Sbjct: 650 ELSLKRSKRLQNYKYAVLFLDLDRFKVINDSLGHITGDQLLVSIAQKLQSIIRSHDLAAR 709

Query: 175 LGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EP 232
           LGG+EF        +  E   +A  +   I+   + +    SI+ + S GI    H+ E 
Sbjct: 710 LGGDEFVVLVEDIQTFDEPIKVAERILAAIQ-VPLELEE-RSIYTSTSIGIVFGSHEYES 767

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            + ++  AD A+Y AK  GR R   F    ++  
Sbjct: 768 ATQLLRDADTAMYRAKSRGRARYEVFDSAMHSQA 801


>gi|115360686|ref|YP_777823.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria AMMD]
 gi|115286014|gb|ABI91489.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria AMMD]
          Length = 745

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + +   +  R+  L+  D L+ L N   F   L         +  K+++++ D+D FK
Sbjct: 297 SDITQRRQAEERLGYLATHDVLTNLANRMLFEERLTHAIVHAKRFGRKVAVMYLDLDRFK 356

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND  GH  GD+V+  +++++V        V R+GG+EFA         +   +    R
Sbjct: 357 LVNDTLGHNAGDEVLKMVAERIVANVRANDTVARMGGDEFALVLEEVD--DVRDVGRVAR 414

Query: 201 KIIENSQINISSG-PSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
           K+++     I  G   I +T S GI+           +I  ADQA+Y AK  GRN    F
Sbjct: 415 KLLDEVGRAIDIGDRQIFVTPSIGISIYPDDGTEAEDLILLADQAMYGAKSRGRNVFQFF 474

Query: 259 SDIENNTC 266
                ++ 
Sbjct: 475 ESKMTSSA 482


>gi|330811466|ref|YP_004355928.1| response regulator, PleD/VieA family [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379574|gb|AEA70924.1| Putative response regulator, PleD/VieA family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 763

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/195 (29%), Positives = 94/195 (48%), Gaps = 13/195 (6%)

Query: 81  LLGYISGSIL--KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------I 131
           LL  I G IL   E  ++  +I+ L+R D L+GL N +  I  L               +
Sbjct: 290 LLLEIEGIILDITERKLAEEKIALLARTDGLTGLANRATMIERLHQAFAAARRGAAPFAM 349

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
            + D+D+FK+IND  GHP+GD ++  ++ ++         V RLGG+EFA   L   E  
Sbjct: 350 FYLDLDHFKRINDTLGHPIGDLLLQEVAKRIKGCTRENDVVARLGGDEFAILQLDVHEAT 409

Query: 192 -AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKK 249
             A LA  +R  +         G  + I++S GIA    +     +++ ++D ALY +K+
Sbjct: 410 HCAALAGKIRDTL--VAPYSLDGNDVRISVSIGIALYTPQSLSADSLMAQSDMALYRSKE 467

Query: 250 SGRNRVVCFSDIENN 264
            GRN+    ++  N 
Sbjct: 468 KGRNQYHFHNEEINQ 482


>gi|297171114|gb|ADI22125.1| FOG: GGDEF domain [uncultured myxobacterium HF0200_19H16]
          Length = 370

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 18/185 (9%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           KEL  +  ++ +L+  D L+G+ NH  F  SL         +   + ++F D+DYFK  N
Sbjct: 168 KELQEANEKLRELALRDGLTGVYNHRFFQESLSSELARAARHQHSVGLLFIDVDYFKNFN 227

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTP---------MFVGRLGGEEFAAAALGSSEQEAAI 194
           D  GH  GD ++  L   L      P             R GGEEF      ++++ + +
Sbjct: 228 DMAGHQAGDALLRQLGKMLSNAGDDPDYRYGGRCSDITARYGGEEFVIILPETNKENSIV 287

Query: 195 LANDLRKIIENSQINISS-GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGR 252
            A  +R +IE     +    P   +T S G++           +I  AD+ALY+AK++GR
Sbjct: 288 RAERVRMMIEEYPFEMREVQPEKKVTASIGVSIYPDDALTKQALIKVADEALYIAKRNGR 347

Query: 253 NRVVC 257
           N+V  
Sbjct: 348 NQVQV 352


>gi|332160194|ref|YP_004296771.1| HmsT protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|318607242|emb|CBY28740.1| putative membrane protein [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664424|gb|ADZ41068.1| HmsT protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|330863409|emb|CBX73530.1| hypothetical protein YEW_AO02740 [Yersinia enterocolitica W22703]
          Length = 366

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 69/251 (27%), Positives = 114/251 (45%), Gaps = 20/251 (7%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYIL--VENLSLVIISITISLLLGYIS 86
           +  S+F   FI+T+    N   F +   P       L   +N+  +I +I + L+   + 
Sbjct: 108 LLLSLFTIFFISTIALSDNFLAFCLHTAPAALTVIFLDDFQNIFRIIFTIMLPLIGFSLH 167

Query: 87  GSILKE-----------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSI 131
             +L+            L+    + S LS ID L+ L N     + L +   +      +
Sbjct: 168 HLMLRRSDDFTRKLVARLYNEREKFSDLSMIDPLTSLYNRRGLENKLETLLAQSPGNHYV 227

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK  NDN+GH +GD+ +  ++  +     +   V R GGEEF       SE+ 
Sbjct: 228 LLLDIDHFKAYNDNYGHTMGDQALVRVAAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEY 287

Query: 192 AAILANDLRKIIENSQINISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           A+ LA  +R+ +    I       +   +T+SAGI+     +  S++   AD+ALY AKK
Sbjct: 288 ASQLAERVRERVLGLDIPHVFNHKVSTTVTLSAGISPLQPYDLASSL-KAADEALYRAKK 346

Query: 250 SGRNRVVCFSD 260
            GRN+V    D
Sbjct: 347 DGRNKVAFAED 357


>gi|315136592|dbj|BAJ43751.1| putative diguanylate cyclase [Escherichia coli DH1]
          Length = 558

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 536 LADRRLYLAKQAGRNRV-FASD 556


>gi|222832502|gb|EEE70979.1| predicted protein [Populus trichocarpa]
          Length = 268

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 24/222 (10%)

Query: 59  YGLEYILVENLSLVIISITISL-LLGYISGSILKELFISY----NRISQLSRIDCLSGLL 113
           Y +   +   LSL +++I   L +L Y++  ++  LF  Y     ++ Q++  D L+ L 
Sbjct: 29  YDVYATVARRLSLPLLTIWFLLPVLMYVTLRVVTLLFDHYLAAGRKLQQMAETDPLTQLA 88

Query: 114 NHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N   F                 L+++  DIDYFK++ND +GH  GD V+  ++D +    
Sbjct: 89  NRRRFSEQFKKETARRQRDGTPLAMLMLDIDYFKRVNDKWGHASGDCVLMAMADLMRKHL 148

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII---------ENSQINISSGPSIH 217
               F  RLGGEEFA    G+S  EA   A  LR  +         +  Q +   G  I 
Sbjct: 149 REIDFPARLGGEEFAVLLPGASSDEAVAAAERLRLAVEAAFVEAAPDAPQPDTGDG-RIR 207

Query: 218 ITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
            T+S G+AE      + +  ++  AD+ LYVAK++GRNRV  
Sbjct: 208 FTVSIGVAEAGTDGCQTLDAMLAVADRRLYVAKEAGRNRVCA 249


>gi|206601953|gb|EDZ38435.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptospirillum sp. Group II '5-way CG']
          Length = 878

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 98/196 (50%), Gaps = 16/196 (8%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LS 130
           + LLL  ++  + +E      +I +L+ ID L+GLLN +A I  L +  EK       ++
Sbjct: 429 VVLLLKDVTAKMERE-----RQIWRLANIDDLTGLLNRTALIERLANEMEKSRRNQGAMA 483

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F D D FK IND  GH  GD  +  +  +L         V RLGG+EF       S++
Sbjct: 484 LLFLDFDDFKGINDTLGHSAGDSFLKVIGHRLSGSVRPTDIVARLGGDEFVVVVSLESDE 543

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
           +    A  +  I+  + ++I S  ++  ++S GIA      E +  ++ +AD A+Y AK 
Sbjct: 544 KILSFAQKILDIL-GAPVSIQS-QTVQTSVSVGIATYPRDAESVEDLLRKADIAMYQAKN 601

Query: 250 SGRNRVVCFS-DIENN 264
            G+N    F+ ++E  
Sbjct: 602 KGKNTWQFFNVEMEER 617


>gi|163800944|ref|ZP_02194844.1| hypothetical protein 1103602000593_AND4_01738 [Vibrio sp. AND4]
 gi|159175293|gb|EDP60090.1| hypothetical protein AND4_01738 [Vibrio sp. AND4]
          Length = 320

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 60/172 (34%), Positives = 90/172 (52%), Gaps = 9/172 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDN 145
           L  +   +S++SR D L+GL N + +  SL     +L       S+V FDID+FK++ND 
Sbjct: 145 LRETNQHLSEISRKDGLTGLFNRAYWEQSLKEEFAELKVTEGASSLVIFDIDHFKKVNDT 204

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD+VI   S  L     +    GR GGEEF      +++++A   A  LRK IE 
Sbjct: 205 YGHHSGDEVIRRTSSILSKTARSNDVCGRFGGEEFTVLLPDTNQEQAIYFAERLRKRIEQ 264

Query: 206 SQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVV 256
             + +     I+ TIS G+     + E  +  +  AD ALY AK++GRN+  
Sbjct: 265 EIVKVEE-FLINYTISVGVCVYKSYFESHTQWLKNADLALYRAKENGRNQTC 315


>gi|94268924|ref|ZP_01291323.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451412|gb|EAT02262.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 333

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 96/179 (53%), Gaps = 11/179 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           ++ ++L  +  ++++LS  D L+GL N  +F  +L +   +       L+++  DID FK
Sbjct: 148 ALKEQLEEANRKLNELSLTDGLTGLANRRSFQEALQTEWRRAMRNRHFLTLILADIDSFK 207

Query: 141 QINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           Q ND +GH  GD  +  ++  +   +  +   V R GGEEFA     +  +    LA ++
Sbjct: 208 QFNDTYGHVAGDDCLVQIAKVIKSPLMRSSDLVARYGGEEFAILLPDTDLKGGEHLAEEI 267

Query: 200 RKIIENSQINISSGPSI-HITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255
           R+ +E  +I+  +  +  H+T+S G+A    +  +    ++  AD+ALY AK+ GRN+V
Sbjct: 268 RREVEQLEIDHENSATGAHVTMSFGVASVVPRLDLVELDLVCAADKALYAAKEDGRNQV 326


>gi|85858866|ref|YP_461068.1| response regulator [Syntrophus aciditrophicus SB]
 gi|85721957|gb|ABC76900.1| response regulator protein with GGDEF domain [Syntrophus
           aciditrophicus SB]
          Length = 356

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 71/268 (26%), Positives = 118/268 (44%), Gaps = 20/268 (7%)

Query: 5   LKDFLSIWLCHEKNLES--FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLE 62
           +  F++  L H   LES   + +  +I  S      + T++ +A I   +I    F G  
Sbjct: 90  MTGFVTFALWHTGKLESPLLNSYLLVIITSALALGKLTTLLELALIGTCFI----FLGSH 145

Query: 63  YILVENLSL-----VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
             + E LSL     +       +L+ YI+     ++    N++  +S  D L+G+ N   
Sbjct: 146 SSINELLSLKYAGGMFAQFAPFVLVAYIATMFASDIRYGLNKVKMMSETDELTGIYNRRG 205

Query: 118 F-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           F       +     Y+  LS++  D D  K+IND +GH  GD+++  L + +        
Sbjct: 206 FAIVAGRLLGQSARYSRPLSLLLIDSDNLKKINDEYGHHAGDQLLITLVNTIQAQLRHTD 265

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-H 229
            + R GG+EF      +    A  +A  +R  IE + I +  G  +H T S G+A     
Sbjct: 266 ILARHGGDEFIILLPETPPSGALDVAERIRNAIETTPI-VLEGKIVHTTASIGVASYPSE 324

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVC 257
              I  ++ +AD  +Y AK  GRNRVV 
Sbjct: 325 GYNIDVLLAQADHKMYAAKLGGRNRVVM 352


>gi|322804607|emb|CBZ02159.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 567

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 79/273 (28%), Positives = 126/273 (46%), Gaps = 36/273 (13%)

Query: 28  MIYFSIFFSIFIATVIFIAN---IFLFYIGLTPFY-GLEY-ILVENLSLVIISIT----- 77
           ++   +FF + + T  + +    +FLF I +T    G++Y I++  L+  II I      
Sbjct: 91  IVLILLFFVVVLGTGTYASQYKFLFLFMIIITTIQSGMKYGIIIACLASFIILIMDIVCA 150

Query: 78  -----------------ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
                            + +L  +  G  +K       ++  L   D L+ + NH  F  
Sbjct: 151 PNLVVNEYFEQDLILAGVFILTAWPLGFYVKVENEHIEKLESLVNKDGLTDVYNHRFFHD 210

Query: 121 SL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           +L          NE LS++F DIDYFK  ND +GH  GD+V+  + + L         V 
Sbjct: 211 ALSKEVIECEEKNEALSMIFIDIDYFKHYNDLYGHQKGDQVLKTIGEILKNNTRKEDIVA 270

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERCHKEP 232
           R GGEEFA     +SEQ+A  +A  +RK IE +      + P+ ++T+S GI+   +K  
Sbjct: 271 RYGGEEFAVLLPNTSEQDAINIAEKIRKKIEYTYFEGEENQPNGNLTVSMGISVYPYKAK 330

Query: 233 IS-TIIYRADQALYVAKKSGRNRVVCFSDIENN 264
               +I  AD ALY AK   +NRV  ++ I + 
Sbjct: 331 SDMELIKSADDALYRAKFFNKNRVEAYTSILDE 363


>gi|254708574|ref|ZP_05170402.1| GGDEF domain protein [Brucella pinnipedialis M163/99/10]
          Length = 204

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 60/169 (35%), Positives = 93/169 (55%), Gaps = 3/169 (1%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGH 148
           +L  S+  +   +RID ++GLLN  A   ++    S  E  +++  D D+FK IND+FGH
Sbjct: 34  QLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGH 93

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ +  ++  L  V      VGR+GGEEF     G+S +    +A  +R  +EN+  
Sbjct: 94  GVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPF 153

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +      +TIS G+A     E  S ++ RAD+ LY+AK+ GRN VV 
Sbjct: 154 HTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVVF 202


>gi|126665277|ref|ZP_01736259.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter sp. ELB17]
 gi|126629905|gb|EBA00521.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter sp. ELB17]
          Length = 828

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 64/253 (25%), Positives = 113/253 (44%), Gaps = 32/253 (12%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYIL--VENLSLVIISITISLL-------LGYISG 87
           I + T++ +    L  + +     L+ ++  V  +    ++ TI+L        LG    
Sbjct: 302 IVLGTIVLLIFALLISMNVLMVRPLKQLMGAVREIGRGNLAPTIALSTSDELGKLGLSFQ 361

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFK 140
            +   L  S  R+ +L+  D L+GL N           IS     + +++++F D+D FK
Sbjct: 362 EMAGNLEKSRVRVERLAYHDSLTGLPNRFRAHETLRCMISLAHRESRRMAVLFLDLDNFK 421

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTP------------MFVGRLGGEEFAAAALG-S 187
           ++ND  GH VGD+++  ++ +L VV                  + RLGG+EF       S
Sbjct: 422 RVNDTLGHQVGDQLLMEMAIRLQVVLRAEDVIHQEVSQNTLDVLARLGGDEFVVLLSNVS 481

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYV 246
           S ++AA +A+ +  I++       +   I+   S GI+        +  +I RAD A+Y 
Sbjct: 482 SSRDAAKVASRILDIMKL--PFYFNENEIYSGCSIGISLFPSDGSDVDDLIKRADAAMYQ 539

Query: 247 AKKSGRNRVVCFS 259
           AK  GRN    +S
Sbjct: 540 AKSQGRNNFQFYS 552


>gi|107026294|ref|YP_623805.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
 gi|105895668|gb|ABF78832.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
          Length = 495

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 9/185 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFF 134
             I    +     +   I  L+R D L+GL N     + L     +         ++++ 
Sbjct: 300 AVIIVEDVTTRRQTEQHIRHLARHDALTGLPNRHELHAELKRMLARRPRLPSPAFAVMYL 359

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND FGH  GD+V+  ++++L           R+GG+EF  A   ++ Q  +I
Sbjct: 360 DLDGFKSINDRFGHQAGDEVLTQVAERLGKTLPPGELAARIGGDEFIVAIDDTTMQACSI 419

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           LA  + + I ++   +S G ++ I IS GIA          +I +AD ALY AK +G+  
Sbjct: 420 LAARIIRQI-SAPYALSIGETVCIGISIGIALDDGHGSPDELIRQADSALYDAKSAGKGI 478

Query: 255 VVCFS 259
              +S
Sbjct: 479 YCFYS 483


>gi|52840532|ref|YP_094331.1| sensory box protein, GGDEF family protein, LssE [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52627643|gb|AAU26384.1| sensory box protein, GGDEF family protein, LssE [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 740

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 89/188 (47%), Gaps = 11/188 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           S   + E      ++   +  D L+ L N    I  +         +  K +I+FFD+D 
Sbjct: 296 SFRDITEQTRLKEKLEYQATHDALTNLPNRLLLIDRIEHAISSYARHKMKFAILFFDLDR 355

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK IND+  H  GD+++  ++ +L  +      + RLGG+EF       +SE++ A +A 
Sbjct: 356 FKMINDSLSHEAGDQLLCAVAKRLRSLVRKEDTLARLGGDEFVMLFQSFNSEEQIAGVAQ 415

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            + K  +  +    +   I+I +S GI+      + ++T++  AD A+Y AK  G N+  
Sbjct: 416 KILKSFQ--KPFHIAERDINIHVSIGISVYPTDGKTVNTLLSNADMAMYQAKFRGGNQFS 473

Query: 257 CFSDIENN 264
            +++  N 
Sbjct: 474 FYTEKLNK 481


>gi|320324570|gb|EFW80647.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. glycinea str. B076]
          Length = 960

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 11/194 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI----- 131
           T ++LL        +EL  +  R+   +  D L+GL N S     L    +   +     
Sbjct: 507 TANVLLEARVRDRTRELDQANARLQHENSHDSLTGLPNRSHLQHRLKQAWQDFCLNGQQL 566

Query: 132 --VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
             +F D+D FK IND+ GH  GD ++   +++L         + RLGG+EFA  ++ +  
Sbjct: 567 IVMFIDLDRFKMINDSLGHHCGDMLLVQAAERLRSCMREGDLLARLGGDEFAVLSIDAPL 626

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
           Q    +A  +    E  Q  +    S+  + S G+  A+    +  + ++  AD A+Y  
Sbjct: 627 QAGTDIAQRILTAFE--QPFVIDDHSVFSSCSIGVVGADSRFHQEPADLLRDADTAMYRV 684

Query: 248 KKSGRNRVVCFSDI 261
           K  GR+    F+  
Sbjct: 685 KNGGRDSFAVFNQA 698


>gi|322420149|ref|YP_004199372.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Geobacter sp. M18]
 gi|320126536|gb|ADW14096.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Geobacter sp. M18]
          Length = 773

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 106/242 (43%), Gaps = 19/242 (7%)

Query: 32  SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK 91
           +I F +   T IF A + +   G   F   E  L+E L+        +L  G +S  I+ 
Sbjct: 146 AISFPLRGETGIFGA-LNVHAAGFGAFDAEEIGLLEELAN-------NLAHGILSLRIMA 197

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           E      +++  +  D L+ L N +     +         +   ++++F D+D+FK +ND
Sbjct: 198 EHKRYEEQLAYQATHDPLTALPNRNLLADRISQALAWAQRHRRWIAVLFVDLDFFKFVND 257

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
           + GH  GD+++  ++++L         +   GG++F          +EA    + +R+ I
Sbjct: 258 SLGHGKGDQLLKMVAERLSERVRQVDTLAHQGGDKFVVVLTDLRGNEEADRAVHVIREAI 317

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             S   +  G  + I+ S GI       E   T++  A+ A+Y AK+ GRN    ++   
Sbjct: 318 --SLPFLMDGQELVISCSIGITVYPKDGEDAQTLVKNAEVAMYRAKEQGRNCFRYYTREL 375

Query: 263 NN 264
           N 
Sbjct: 376 NE 377


>gi|253997135|ref|YP_003049199.1| diguanylate cyclase [Methylotenera mobilis JLW8]
 gi|253983814|gb|ACT48672.1| diguanylate cyclase [Methylotenera mobilis JLW8]
          Length = 605

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/174 (35%), Positives = 97/174 (55%), Gaps = 8/174 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           + EL +  + IS+ +  D L+G LN      +L         +   LS+   D+D+FK+I
Sbjct: 423 INELTLKLDYISEAAHEDFLTGALNRRGMDEALIREFERSDRHGTSLSLAMLDVDHFKKI 482

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GDK +A LS  +  +  +   + R GGEEF     GS++ +A  + + L++ 
Sbjct: 483 NDTMGHSTGDKALAHLSKVVKGILRSTDVLARYGGEEFVILLPGSNQNDAVTVVSGLQRD 542

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +      + +   + IT SAG+AER H E + +++ RAD ALY+AK+SGRNRVV
Sbjct: 543 L-TKNFFLHNNERVLITFSAGVAERVHGESVDSVLPRADAALYLAKQSGRNRVV 595


>gi|167623607|ref|YP_001673901.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167353629|gb|ABZ76242.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 613

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 99/210 (47%), Gaps = 20/210 (9%)

Query: 71  LVIISITISLLL--GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE- 127
           +++  I+ISLL+   Y   +  K L  S   + + S +D L+GL N   F+  L    + 
Sbjct: 402 ILVAIISISLLIKKRYGLENDNKNLQSSNRELYKQSNLDSLTGLYNRRYFLDYLAQQGQL 461

Query: 128 ------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                 ++ +   DID+FK++ND +GH VGD+V+  +   +         + R GGEEF 
Sbjct: 462 PTLQNMRMCLAIIDIDHFKRVNDTYGHDVGDEVLVRVGQLIQSNIREDDLLIRWGGEEFI 521

Query: 182 AAA--LGSSEQEAAILA----NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
                   S  ++          +R+ + ++ I +     +H+T+S G+ +      +  
Sbjct: 522 LLLSWPDVSCPQSVRALSNHFERIRQAVADAIIEVQE-QQLHLTVSVGVGQPLDARTLVE 580

Query: 236 ----IIYRADQALYVAKKSGRNRVVCFSDI 261
               ++  AD+ALY+AK+ GRN VV   + 
Sbjct: 581 SWQFVLDCADKALYLAKRQGRNCVVLAKEA 610


>gi|188581844|ref|YP_001925289.1| diguanylate cyclase [Methylobacterium populi BJ001]
 gi|179345342|gb|ACB80754.1| diguanylate cyclase [Methylobacterium populi BJ001]
          Length = 506

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 11/205 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-- 127
           ++V++   +++ L  + G  L+     +  +++LSR D L+GL N   F   L    E  
Sbjct: 295 AVVLVLCGLTVTLSLLFGRELRRRAEMHAEMARLSRTDALTGLANRRRFEQVLARACEDA 354

Query: 128 -----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFA 181
                 LS++  D D+FK+ ND +GH VGD+V+  L+  L   V        R+GGEEF 
Sbjct: 355 RRTGNPLSLLVVDADHFKRYNDRYGHAVGDEVLKGLAGCLKAAVPRPGDLACRVGGEEFV 414

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                +    A  +A  +   +    I  +      +T+S G+A       +  +   AD
Sbjct: 415 LLLPNTDAAGARRVAERVHAQVSGLAIASAGIAPGAVTVSIGLATGITDADLYGL---AD 471

Query: 242 QALYVAKKSGRNRVVCFSDIENNTC 266
            ALY AK  GRN+  C S +   + 
Sbjct: 472 AALYEAKACGRNQTRCASRLTGRSA 496


>gi|189426005|ref|YP_001953182.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter lovleyi SZ]
 gi|189422264|gb|ACD96662.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter lovleyi SZ]
          Length = 308

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 85/177 (48%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144
           EL    + +++LS +D L+G+ N  A   +L             LS++  DID+FK  ND
Sbjct: 126 ELKRQRDLLARLSHLDGLTGIPNRRALDEALEREWRRGSRSLKPLSLLMIDIDHFKAYND 185

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           + GH  GD  +  ++  L         FVGR GGEEF A    +    A ++A ++ + +
Sbjct: 186 SCGHLAGDDCLRTVAQTLKQSLGRAADFVGRYGGEEFLAVLPETDADGAQVVAREVIEEM 245

Query: 204 ENSQINISSGPSI-HITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVC 257
               I   + P    +TIS GIA    K       ++  AD ALY AK+ GRNR+V 
Sbjct: 246 AKLAIPHPASPQGEKVTISIGIATAVAKREHLPVFLLQEADSALYRAKQEGRNRIVA 302


>gi|119944290|ref|YP_941970.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Psychromonas ingrahamii 37]
 gi|119862894|gb|ABM02371.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
          Length = 980

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 10/184 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFK 140
             + E  ++   +  L+  D L+GL N        +   +     NE L+++F D+D+FK
Sbjct: 537 QDITERKLAEAHLQALANFDQLTGLPNRFMLKDKITYLFTLARRNNESLTMMFLDLDHFK 596

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND  GH +GD+++  ++ +L         V R+G +EF      +    A  +A  L 
Sbjct: 597 NVNDTLGHVIGDRLLIEIAKRLKSAIREVDLVSRIGSDEFILLFPNTDADSALNIATKLI 656

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +  S   +     + IT + GIA      E   T+I  AD A+  AK+  RN    F+
Sbjct: 657 ETV--SLPTVFEHHELFITATIGIAIYPNDGEEFETLIKNADTAMSQAKRYSRNTFHFFT 714

Query: 260 DIEN 263
           +   
Sbjct: 715 EEMQ 718


>gi|28868822|ref|NP_791441.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28852061|gb|AAO55136.1| GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 358

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 115/225 (51%), Gaps = 10/225 (4%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
              + +    L P   L+  +++  + + + +   + +G+++  +  +L+   N +  LS
Sbjct: 125 ALGVLISLAVLNPVVNLDGNMMQIYACLPVLVIYPIFIGWMNHQVTLKLWEHRNILRTLS 184

Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           R D L+GLLNH A+   L        + +++  I   DID+FK IND +GH +GD V+  
Sbjct: 185 RTDSLTGLLNHGAWKDLLDLEFAKSQNQHQECVIALIDIDHFKIINDTYGHLMGDTVLQN 244

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +S+ L+        +GR GG+EF      +S  +A  +   +R  I+  ++  S    + 
Sbjct: 245 ISEALIENLRDSDLIGRCGGDEFCVILPNTSLLQAREILERMRLAID--ELTYSLHCDLK 302

Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            ++S GIA    +    S+ ++ AD+ALY+AK +GRNRVV   D 
Sbjct: 303 ASLSVGIAAYSPELPDASSWLHEADKALYLAKSTGRNRVVSAEDA 347


>gi|78042726|ref|YP_359012.1| GGDEF domain-containing protein [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77994841|gb|ABB13740.1| GGDEF domain protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 543

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 9/169 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y R+ +L++ D L+GL N   F+  L         +    +IV  DIDYFK+IND +GH 
Sbjct: 372 YLRLKELAQKDELTGLYNRRYFLERLNEEHLRSRRHKLNYTIVLLDIDYFKKINDTYGHD 431

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+      L           R GGEEF      + ++EA +LA  LR+ ++  ++ 
Sbjct: 432 CGDLVLNDFGRFLKDTLRRTDLSARYGGEEFVVLLPQTGKKEAYLLAERLREKVKE-RVL 490

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           I  G  +  T+S G+A      E    ++  AD+ALY AK  GR++VV 
Sbjct: 491 IFQGQKVKYTVSMGLAAYPEDAEEYRELLSLADKALYQAKNRGRDKVVM 539


>gi|56751584|ref|YP_172285.1| hypothetical protein syc1575_c [Synechococcus elongatus PCC 6301]
 gi|56686543|dbj|BAD79765.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 1068

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 14/187 (7%)

Query: 85   ISGSILKELFIS------YNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSI 131
            ++ +I ++L ++         + Q +  D L+GL N                   + + I
Sbjct: 853  LAETIAEQLALAIANLQLRETLRQENLRDPLTGLFNRRYLQEFFEQELARAKRSGDSIGI 912

Query: 132  VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
            +  DIDYFK+ ND FGH  GD V+  ++  L+        V R GGEE A    G+S + 
Sbjct: 913  LMLDIDYFKRFNDEFGHDAGDMVLKQVARALLNQVRASDVVCRFGGEEIAILMPGASLEV 972

Query: 192  AAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKS 250
            +A  A+ +R+ I    I+        +TIS G+A          T+I  AD +LY AK +
Sbjct: 973  SARKADQIRQAIAQLIISYHEQTLPSLTISIGVAAFPESGLASDTLIKSADTSLYQAKAA 1032

Query: 251  GRNRVVC 257
            GRN VV 
Sbjct: 1033 GRNCVVV 1039


>gi|296135372|ref|YP_003642614.1| diguanylate cyclase/phosphodiesterase [Thiomonas intermedia K12]
 gi|295795494|gb|ADG30284.1| diguanylate cyclase/phosphodiesterase [Thiomonas intermedia K12]
          Length = 780

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 104/212 (49%), Gaps = 11/212 (5%)

Query: 58  FYGLEYILVENLSLVIISITISL-LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           F+   +  +  L+L +  +T++  L+   +     +L      + +L+  D L+GLLN  
Sbjct: 312 FWRAYWPALTILALWLAVLTLAYRLVRKQAERDSAQLRDRSEIMYRLANQDSLTGLLNRR 371

Query: 117 AFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
                L   +++        ++V FD+D+FK IND FGH  GD V+  ++  L       
Sbjct: 372 GMGEYLQRAHDRARDHGIGYALVLFDLDHFKLINDGFGHAAGDAVLQQVAHLLQTRVRKE 431

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
             V R GGEEF      SS Q A   A  LR++I ++++++  G  + +T S G++    
Sbjct: 432 DQVARWGGEEFLVLLPDSSLQTAHATAEKLRELISHTRMSV-GGAELRLTASFGVSAWEP 490

Query: 230 KEPI--STIIYRADQALYVAKKSGRNRVVCFS 259
             P+  + ++ + D ALY AK  GRNRV  F 
Sbjct: 491 GGPLASAELLGQCDSALYNAKAGGRNRVKQFE 522


>gi|298530005|ref|ZP_07017407.1| response regulator receiver modulated diguanylate cyclase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509379|gb|EFI33283.1| response regulator receiver modulated diguanylate cyclase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 310

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 14/190 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSI 131
           +++   I   +   L I  + + +LS  D L+ + N   F  +L             LS 
Sbjct: 117 TIVRARIKNQM--NLKIKTDMLEKLSMQDGLTEIPNRRFFEENLAREWSRCMRNGLPLSQ 174

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQ 190
           +  DID FK  NDN+GH  GD  +  +++ +            R GGEEF      +   
Sbjct: 175 LIMDIDNFKPYNDNYGHGAGDDCLKKVANVIKNTLSRPTDLAARYGGEEFVVLLPETHAA 234

Query: 191 EAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPI---STIIYRADQALYV 246
            A  +A +LR  ++   I     P+   +TIS G +    + P+     ++  AD+ALY 
Sbjct: 235 GAVHVAEELRAAVQGLGITHEHSPTASVVTISVGTSTHSAESPMKNKEQLLQLADEALYQ 294

Query: 247 AKKSGRNRVV 256
           AK+SGRNRV 
Sbjct: 295 AKESGRNRVQ 304


>gi|254470566|ref|ZP_05083970.1| hypothetical protein PJE062_5112 [Pseudovibrio sp. JE062]
 gi|211960877|gb|EEA96073.1| hypothetical protein PJE062_5112 [Pseudovibrio sp. JE062]
          Length = 698

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 11/192 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
            +S S + +   + + +  L+  D L+GL N +        Y           +++F D+
Sbjct: 240 LLSASDVTKRLKAEHEVRYLAHHDTLTGLANRTFLEIEAERYLDETRITGNPGALIFIDL 299

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FK IND  GH VGD ++  ++ +L  V     FV RLGG+EF       +       +
Sbjct: 300 DRFKTINDTLGHLVGDDLLVVIAKRLKEVVEGIGFVARLGGDEFVVLIANFADYDLLDDI 359

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           + ++R  +  S+     G  + +T S G+     H   + T++ +AD A+Y AK  GR+R
Sbjct: 360 SREIRTAL--SKPCKVRGHMLQVTPSIGVCTYPEHGVDLDTLMRKADLAMYKAKDLGRDR 417

Query: 255 VVCFSDIENNTC 266
           +  F    +   
Sbjct: 418 ICFFDISMSREA 429


>gi|149182637|ref|ZP_01861106.1| hypothetical protein BSG1_13231 [Bacillus sp. SG-1]
 gi|148849660|gb|EDL63841.1| hypothetical protein BSG1_13231 [Bacillus sp. SG-1]
          Length = 737

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 9/188 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYF 139
           I G  + E   +   I +++  D L+ L N + F   L    E      L+I+F D+D F
Sbjct: 288 IVGRDITERKKTEETIREMAYYDTLTSLPNRNMFKLRLNKLLESSPSTSLAILFLDLDRF 347

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND  GH  GD+++  ++D+L  V      V R GG+EF      S +++AA L+  +
Sbjct: 348 KVINDTKGHSTGDRLLVKVADRLTDVLNKEGEVFRQGGDEFILLLDNSDKEKAASLSVRI 407

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
            +      I+IS G    +T S GI+          T+I  AD A+Y+AK  G+N    +
Sbjct: 408 LQSF-TKPIDIS-GQDFFVTPSIGISMYPDDGMDQETLIKHADTAMYLAKDRGKNNFQFY 465

Query: 259 S-DIENNT 265
           + ++  NT
Sbjct: 466 NRNLNRNT 473


>gi|197116513|ref|YP_002136940.1| HAMP domain-containing protein diguanylate
           cyclase/phosphodiesterase [Geobacter bemidjiensis Bem]
 gi|197085873|gb|ACH37144.1| diguanylate cyclase/phosphodiesterase, HAMP domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 721

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 82/183 (44%), Gaps = 11/183 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L      + QL+  D L+ L N + F   L           + LS++F D+D+FK IND 
Sbjct: 261 LRQRQAHLQQLAHYDPLTRLPNRTLFYDRLAQALYQAERSRQALSVIFIDLDHFKDINDT 320

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIE 204
            GH  GD ++  ++ +L  V  +   V RLGG+EF        + + AAI+A  L  +  
Sbjct: 321 LGHRTGDLLLIEVASRLSTVVRSCDTVARLGGDEFTIFTQNVVNAENAAIVAAKLNGLFA 380

Query: 205 NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
               ++     I++T S G+    H    +  ++  AD A+Y AK  G+N    F    N
Sbjct: 381 K-PFHLGES-EIYVTASIGVTLFPHDGKTVDELLMNADIAMYHAKACGKNVYKMFDRKMN 438

Query: 264 NTC 266
              
Sbjct: 439 EHA 441


>gi|320332786|ref|YP_004169497.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Deinococcus
           maricopensis DSM 21211]
 gi|319754075|gb|ADV65832.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Deinococcus
           maricopensis DSM 21211]
          Length = 615

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 11/200 (5%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEK 128
           + + ++    S  ++ EL  +   I  L+  D L+GL N +     L         + E 
Sbjct: 146 LAVVVMDALRSRCVILELEDARAHIRTLAFHDPLTGLPNRALLTEHLARAHAHAERHGEA 205

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-S 187
            +++  D+D FK +ND  GH VGD+++  ++ +L         V R  G+EF        
Sbjct: 206 FAVMLLDLDRFKLVNDTLGHGVGDQLLRGVAGRLRHAVRAEDIVARFAGDEFVLLLPDLH 265

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYV 246
               A  LA  L   +            +H   SAGI+           ++  AD A+Y 
Sbjct: 266 DAAHAERLAQTLMDALAT--PFTLDEHVLHAHFSAGISFYPEDGATAEALLRAADIAMYE 323

Query: 247 AKKSGRNRVVCFSDIENNTC 266
           AK +GR R   +++      
Sbjct: 324 AKLAGRGRCRTYNEDMRRQA 343


>gi|292489002|ref|YP_003531889.1| protein YhjK [Erwinia amylovora CFBP1430]
 gi|291554436|emb|CBA21917.1| Protein yhjK [Erwinia amylovora CFBP1430]
          Length = 537

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 83/164 (50%), Gaps = 9/164 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+   ++ D L+GLLN     + L    S  +  +++  DID FK +ND FGH  GD VI
Sbjct: 361 RLKSEAQTDPLTGLLNRRGLDAVLDYFLSTGQPFALLALDIDRFKGVNDAFGHAAGDTVI 420

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++ QL +       + R GGEEF     G+    A ++A  +RK IE  QI+      
Sbjct: 421 KTVAQQLGLGARQSDVLCRNGGEEFLMILPGADRDRALMIAERVRKRIEQFQIDAIG--- 477

Query: 216 IHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
            ++TIS GI+         +     +AD+ALY AK +GRN VV 
Sbjct: 478 -NVTISIGISFWSSDSENDMHDAFGQADEALYRAKNTGRNCVVI 520


>gi|238791756|ref|ZP_04635393.1| hypothetical protein yinte0001_14720 [Yersinia intermedia ATCC
           29909]
 gi|238728860|gb|EEQ20377.1| hypothetical protein yinte0001_14720 [Yersinia intermedia ATCC
           29909]
          Length = 572

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 13/177 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           +L  +  R+   +R D L+ L N  AF              N  L+++  DIDYFK  ND
Sbjct: 389 KLVKANRRLEIQARTDSLTKLPNRRAFKKVLAHEFMRAKRSNSPLAVLMIDIDYFKNFND 448

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  L      +   V R GGEEFAA    + ++ A+++A  + + I
Sbjct: 449 CYGHISGDACLRLVARALRKSLKRSTDIVARYGGEEFAAILPDTDQRGASLVAEHILQSI 508

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-----PISTIIYRADQALYVAKKSGRNRV 255
               I  S      +TIS G+      +       + ++  ADQALY +KK+GRN+ 
Sbjct: 509 RAMGIKHSDSKFRKVTISLGLTIYQANQHVGTTDQADLMLAADQALYYSKKNGRNQF 565


>gi|237654383|ref|YP_002890697.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
 gi|237625630|gb|ACR02320.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
          Length = 748

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 11/189 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
           Y     + E   +   IS  +  D L+ L N   F   L             L+++F DI
Sbjct: 287 YGVARDISERKRAEEIISFQAYHDQLTHLPNRVLFKDRLELAIAQAQRRTGALAVMFIDI 346

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAIL 195
           D FK +ND FGH  GD ++  ++ +L         + RLGG+EF       ++ ++A ++
Sbjct: 347 DRFKLVNDTFGHAEGDLLLRAIASRLSATLRRGDTLARLGGDEFTVLLPDINQPEDAEVI 406

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A  +   +  + + +S G     T+S GIA           +   AD A+Y  K+SG+N 
Sbjct: 407 ARKVLDALA-TPVRLSQG-EFRATVSVGIALFPRDGTTAEDLTRHADAAMYQVKRSGKNA 464

Query: 255 VVCFSDIEN 263
              F    N
Sbjct: 465 FRFFDPELN 473


>gi|152994781|ref|YP_001339616.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150835705|gb|ABR69681.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 508

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 90/168 (53%), Gaps = 9/168 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHP 149
             +++Q +  D L+ L N +A+  +       +    + + +   DID+FK++ND +GH 
Sbjct: 341 QEKLAQ-AMTDSLTDLPNRTAYQDAILPLCKIMQKTQKSICLAVCDIDHFKKVNDTWGHL 399

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GDKV+  +  Q+         + R GGEEF  A   ++ ++A   A  +R  +  +  N
Sbjct: 400 AGDKVLRLVPKQIRSALLKEDLMFRYGGEEFVIAFPETTLEQAVERAEAIRLAVAKTPFN 459

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  G  + I+IS GIAE   +E   ++  RAD+ LY+AK++GRNRV+ 
Sbjct: 460 M-QGEPVSISISIGIAELQAQENPESLFARADKQLYMAKEAGRNRVMA 506


>gi|71735919|ref|YP_276815.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556472|gb|AAZ35683.1| GGDEF domain protein [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 432

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 119/285 (41%), Gaps = 36/285 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL------FYIG 54
           + +S    L +WL  +    +     +M    + +++F+ +   +   +L          
Sbjct: 141 LEQSYPVELQLWLA-DIRWPALHGA-WMSLIQLSYAMFLVSFGVLIWQYLEKPRPLHAAQ 198

Query: 55  LTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           +    GL + L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL 
Sbjct: 199 IVGLLGLFWALPKTFILPFTLNILCSQVMLMIAAAVAHEAY-------QMAFRDELTGLP 251

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A    +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        
Sbjct: 252 GRRALNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAY 311

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------------------- 214
           R GGEEFA      +  E       +R+ I N +I + +                     
Sbjct: 312 RYGGEEFAIVFAAKTIDECMPHLEAIRETIANYEIQLRNKDSRPQDDQQGRQRRGGAQAG 371

Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S+ +T+S G+AER         ++  ADQALY AK +GRN VV +
Sbjct: 372 SVSVTVSIGVAERQPEHRTPEEVLKSADQALYAAKGAGRNCVVAY 416


>gi|262165480|ref|ZP_06033217.1| GGDEF family protein [Vibrio mimicus VM223]
 gi|262025196|gb|EEY43864.1| GGDEF family protein [Vibrio mimicus VM223]
          Length = 406

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 9/177 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           K+L+ +  ++  LS  D L+GL N    +  L           +    V  D+D FK++N
Sbjct: 228 KQLYQANRQLEALSLTDSLTGLPNRRKAMHQLALHWNLAREQKKPFVCVMIDVDGFKEVN 287

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D++GH +GDKV+  ++  L   F     V RLGG+EF A    +       +A  +   +
Sbjct: 288 DSYGHDIGDKVLTIIAHALKDHFRNDDLVCRLGGDEFLAICPNTDAVSGVHIAEHVCDEV 347

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           E  +I +  G     ++S G+AE     +    ++  ADQA+Y+AK +G+NRV  F+
Sbjct: 348 ELLEIPV-EGIHWQGSVSMGVAEFDPNMKEHHELLRAADQAVYLAKNNGKNRVCAFN 403


>gi|254447202|ref|ZP_05060669.1| gaf/pas/ggdef domain protein [gamma proteobacterium HTCC5015]
 gi|198263341|gb|EDY87619.1| gaf/pas/ggdef domain protein [gamma proteobacterium HTCC5015]
          Length = 488

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 74/180 (41%), Gaps = 22/180 (12%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL      ++ L+  D L+ L     F+  L           + L+ V  D+D+FK  ND
Sbjct: 309 ELEEKNIELATLANTDPLTQLATRRYFMERLSTAIAYCQRQQQPLAYVLLDVDHFKSFND 368

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+ +  +   L           R GGEEFA     ++ QEA  +A  LR  IE
Sbjct: 369 QYGHLAGDEALKRVGSILKHSPREYDLASRYGGEEFALYLPSTTAQEALQVAERLRTAIE 428

Query: 205 NSQINISSGPSIHITISAGIAERCHKEP----------ISTIIYRADQALYVAKKSGRNR 254
                  S     IT S G+A                 I  +I RAD ALY AK  GRNR
Sbjct: 429 EI-----SDLDRPITASLGVALLDPASALPPDSDMKTVIEALIQRADTALYQAKSQGRNR 483


>gi|147678062|ref|YP_001212277.1| signaling protein [Pelotomaculum thermopropionicum SI]
 gi|146274159|dbj|BAF59908.1| hypothetical signaling protein [Pelotomaculum thermopropionicum SI]
          Length = 343

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 86/176 (48%), Gaps = 14/176 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           +EL    +R+  LS  D L+G  N    IS L         +   LS++  DID+FK++N
Sbjct: 159 EELARVNSRLELLSITDPLTGAYNRRYIISQLEQELAVAARHGLPLSLIMIDIDHFKKVN 218

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH VGD+V+  +   L     T   +GR GGEEF   A  +  QEA +LA  LR  +
Sbjct: 219 DTHGHQVGDEVLKDVVKVLSGCIRTADVLGRYGGEEFVVIAPFTGFQEALVLAERLRDTV 278

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEP------ISTIIYRADQALYVAKKSGRN 253
                  + G  + +TIS G+     KE       I  ++ RAD+ +Y AK  GRN
Sbjct: 279 SRWPFETTYGF-LKLTISLGVTTFNGKEEHYHNSLIDRLLARADEEMYKAKAQGRN 333


>gi|114570365|ref|YP_757045.1| diguanylate cyclase [Maricaulis maris MCS10]
 gi|114340827|gb|ABI66107.1| diguanylate cyclase [Maricaulis maris MCS10]
          Length = 379

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 63/253 (24%), Positives = 116/253 (45%), Gaps = 21/253 (8%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           P       ++ +   +A ++   +I++  +  +P      +   N++L+      ++ + 
Sbjct: 110 PGIMTFTLAVGWRTGLAYLLAALSIYVGCVVQSPETAGYSVTSSNVTLLTALGGAAIFIF 169

Query: 84  YISGSILKELFISYNRIS--------------QLSRIDCLSGLLNHSAFISSLG----SY 125
             +    +E+  + +R+               + +  D L+G  N +A    L      +
Sbjct: 170 IGATIFRREMVNAAHRLETARKAAEISMAHFRERAATDALTGAANRAAIDQILAAETDRH 229

Query: 126 NE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
            E     ++V FD+D+FK++ND FGH  GD+V+      +     T   +GR+GGEEF  
Sbjct: 230 RETGIPFAVVVFDLDHFKRVNDTFGHLAGDRVLIETVRVVKQALRTSDMLGRIGGEEFVV 289

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
              G S Q+A ++A  +RK+I    I +    S+  T S G+ E       + ++ RAD+
Sbjct: 290 VLPGVSGQQARLMAERMRKMIAAISIQVDGRGSVSPTASFGVTECDVNASATDLLARADE 349

Query: 243 ALYVAKKSGRNRV 255
            LY AK+ GRNRV
Sbjct: 350 YLYRAKRGGRNRV 362


>gi|94500006|ref|ZP_01306541.1| sensory box protein [Oceanobacter sp. RED65]
 gi|94427864|gb|EAT12839.1| sensory box protein [Oceanobacter sp. RED65]
          Length = 764

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 7/187 (3%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQ 141
           +  S + +   +   I Q +  D L+ LLN  +F     +  +     +++F D+D FKQ
Sbjct: 368 VLFSDITDKKQTQELIWQQAHYDNLTQLLNRHSFTQYTQNLIQKALPFALLFIDLDNFKQ 427

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND  GH VGD ++   + ++         V R GG+EF    LG  +      + +D+ 
Sbjct: 428 VNDTQGHNVGDALLIEAAKRIKQCVRESDIVARFGGDEFTVLLLGIKNVLSTKRICSDIT 487

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           K +  S+         +++ S GIA+     + +  +   ADQA+Y AK  GRNR   F+
Sbjct: 488 KRL--SEPFTLDKEKAYVSASIGIAQFPWDSDNLEDLYKYADQAMYEAKHLGRNRFSFFT 545

Query: 260 DIENNTC 266
                  
Sbjct: 546 HELQQKA 552


>gi|50120615|ref|YP_049782.1| hypothetical protein ECA1681 [Pectobacterium atrosepticum SCRI1043]
 gi|49611141|emb|CAG74587.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 442

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 63/179 (35%), Positives = 89/179 (49%), Gaps = 9/179 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
           Y    +L  LF    ++   S  D L+ LLN     + L          N  LSI   DI
Sbjct: 261 YKINMLLGSLFDEVQKLE--SGKDTLTLLLNRRFLPTILRHEISLTMHSNTPLSIAMIDI 318

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK +ND +GH  GD ++  +++ L        +V R GGEEF    + + +  A  + 
Sbjct: 319 DHFKSVNDTYGHAAGDNILKRIAEILYESTRNSDYVFRYGGEEFLIVLIETPKVAAHTII 378

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             LRK IEN  I++ +G S+ +TISAGIA          +I  AD ALY AK +GRNR+
Sbjct: 379 ERLRKKIENHFIHLQNGESVKMTISAGIAVYSGHPDYECLIKAADDALYQAKANGRNRI 437


>gi|312880837|ref|ZP_07740637.1| diguanylate cyclase with extracellular sensor [Aminomonas
           paucivorans DSM 12260]
 gi|310784128|gb|EFQ24526.1| diguanylate cyclase with extracellular sensor [Aminomonas
           paucivorans DSM 12260]
          Length = 648

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 90/200 (45%), Gaps = 21/200 (10%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------Y 125
            ++   SL+  ++    ++E      ++   ++ D L+G  N  AF  ++         Y
Sbjct: 446 FLAAGASLIDLFLLRRDMEE------QLLHQAQTDPLTGATNRRAFFEAVAREMHRSRRY 499

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              LS+V  D+D FK++ND FGH  GD V+  L             +GRLGGEEF     
Sbjct: 500 GVPLSLVVLDVDLFKRVNDRFGHDAGDTVLQRLVIAARNTLRQEDVLGRLGGEEFGILLP 559

Query: 186 GSSEQEAAILANDLRKIIENSQI------NISSGPSIHITISAGIAERCH--KEPISTII 237
            +  +EA   A  +R  +EN +           G    +T S G+A       E   ++ 
Sbjct: 560 ETPLKEACAAAERVRMAVENLRPLPSAPCPAGKGTEPRVTASFGVASHRPEKDEDAQSLY 619

Query: 238 YRADQALYVAKKSGRNRVVC 257
            RAD+ LY AK +GRNR+V 
Sbjct: 620 RRADKNLYRAKAAGRNRIVW 639


>gi|167623887|ref|YP_001674181.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167353909|gb|ABZ76522.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 350

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 90/174 (51%), Gaps = 10/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDN 145
           L      +  ++  D L+ + N  AF   + S+ +         S++  DID+FK+ ND 
Sbjct: 168 LKSEMVELRSVAMTDQLTSVNNRRAFDKEVISHIDSFNHSNFDSSLLVVDIDHFKRFNDI 227

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGDKV+A+++  L        FV R GGEEF      ++++EA I+A +LR+ I  
Sbjct: 228 HGHLVGDKVLAYVAQALKNGVKGDDFVARYGGEEFVILLPNTTQEEANIVAENLRQKIAE 287

Query: 206 SQINISSGPSI---HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             + I     +   +IT+S G+A     +   +   RAD+ALY AK SGRN VV
Sbjct: 288 RNLTIGKDKKLPLGNITVSVGVASLKAADDKDSYFIRADEALYRAKSSGRNCVV 341


>gi|226947564|ref|YP_002802655.1| GGDEF/HD domain protein [Clostridium botulinum A2 str. Kyoto]
 gi|226843784|gb|ACO86450.1| GGDEF/HD domain protein [Clostridium botulinum A2 str. Kyoto]
          Length = 567

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 79/273 (28%), Positives = 126/273 (46%), Gaps = 36/273 (13%)

Query: 28  MIYFSIFFSIFIATVIFIAN---IFLFYIGLTPFY-GLEY-ILVENLSLVIISIT----- 77
           ++   +FF + + T  + +    +FLF I +T    G++Y I++  L+  II I      
Sbjct: 91  IVLILLFFVVVLGTGTYASQYKFLFLFMIIITTIQSGMKYGIIIACLASFIILIMDIVCA 150

Query: 78  -----------------ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
                            + +L  +  G  +K       ++  L   D L+ + NH  F  
Sbjct: 151 PNLVVNEYFEQDLILAGVFILTAWPLGFYVKVENEHIEKLESLVNKDGLTDVYNHRFFHD 210

Query: 121 SL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           +L          NE LS++F DIDYFK  ND +GH  GD+V+  + + L         V 
Sbjct: 211 ALSKEVIECEEKNEALSMIFIDIDYFKHYNDLYGHQKGDQVLKTIGEILKNNTRKEDIVA 270

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERCHKEP 232
           R GGEEFA     +SEQ+A  +A  +RK IE +      + P+ ++T+S GI+   +K  
Sbjct: 271 RYGGEEFAVLLPNTSEQDAINIAEKIRKKIEYTYFEGEENQPNGNLTVSMGISVYPYKAK 330

Query: 233 IS-TIIYRADQALYVAKKSGRNRVVCFSDIENN 264
               +I  AD ALY AK   +NRV  ++ I + 
Sbjct: 331 SDMELIKSADDALYRAKFFNKNRVEAYTSILDE 363


>gi|192290414|ref|YP_001991019.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
 gi|192284163|gb|ACF00544.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
          Length = 381

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 95/173 (54%), Gaps = 8/173 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           +L  +Y RI +L+ +D L+G  N           I     + E LS+   D+D+FK+IND
Sbjct: 209 QLREAYQRIEELAELDELTGAYNRRCIMRHLDNEIERAARHCESLSLALIDLDWFKRIND 268

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGHP+GD+V+   +  +     +    GR GGEEF      +S+ EA ++ + LR I+ 
Sbjct: 269 TFGHPIGDEVLRTFAITIFANIRSFDRFGRYGGEEFLLLLPNTSDDEARLILDRLRMIVA 328

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +  S PS+ +T+SAG+     +E    ++ RAD+ALY AK  GRNR+ C
Sbjct: 329 DLDWSAFS-PSMMVTLSAGVTTMTLQESTEAVLARADRALYEAKHGGRNRISC 380


>gi|89099761|ref|ZP_01172634.1| hypothetical protein B14911_21668 [Bacillus sp. NRRL B-14911]
 gi|89085508|gb|EAR64636.1| hypothetical protein B14911_21668 [Bacillus sp. NRRL B-14911]
          Length = 677

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 109/235 (46%), Gaps = 8/235 (3%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
           ++ + F   +    F+ +       L           E LS++++    ++         
Sbjct: 174 FWFLSFGALLLAYTFVGSTIEIIRSLNSSGDNSLFFTEVLSILLLLGVTTVYGEKQYNRK 233

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNF 146
            +EL  S   ++ L+  D L+GL N    + S+  +     + ++VF D+D+FK +ND  
Sbjct: 234 EQELVESNKHLNHLAYHDTLTGLPNRRKVMQSIEEWMAEDIQFAVVFIDLDHFKHVNDLL 293

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILANDLRKIIEN 205
           GH +GD ++  ++ +L    G+   VGRLGG+EF        + Q     A+ + K++E 
Sbjct: 294 GHNIGDDLLKKIASRLKENSGSEDIVGRLGGDEFIILKPVKENLQLDDFSADLIEKVVEP 353

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            QI       I IT S GIA    H + ++ I+ +AD A+Y +K  GRN    F+
Sbjct: 354 VQI---LEHEIVITTSIGIALYPTHGKDVNDIMKKADIAMYNSKDKGRNTYFIFT 405


>gi|296105837|ref|YP_003617537.1| sensory box protein, GGDEF family protein, LssE [Legionella
           pneumophila 2300/99 Alcoy]
 gi|295647738|gb|ADG23585.1| sensory box protein, GGDEF family protein, LssE [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 741

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 90/188 (47%), Gaps = 11/188 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           S   + E      ++   +  D L+ L N    I  +         +  K +I+FFD+D 
Sbjct: 297 SFRDITEQTRLKEKLEYQATHDALTNLPNRLLLIDRIEHAISGYARHKMKFAILFFDLDR 356

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK IND+  H  GD+++  ++++L  +      + RLGG+EF       +SE++ A +A 
Sbjct: 357 FKMINDSLSHEAGDQLLCAVAERLRSLVRKEDTLARLGGDEFVMLFQSFNSEEQIAGVAQ 416

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            + K  +  +    +   I+I +S GI+      + ++T++  AD A+Y AK  G N+  
Sbjct: 417 KILKSFQ--KPFHIAERDINIHVSIGISVYPTDGKTVNTLLSNADMAMYQAKFRGGNQFS 474

Query: 257 CFSDIENN 264
            +++  N 
Sbjct: 475 FYTEKLNK 482


>gi|254511651|ref|ZP_05123718.1| sensor histidine kinase [Rhodobacteraceae bacterium KLH11]
 gi|221535362|gb|EEE38350.1| sensor histidine kinase [Rhodobacteraceae bacterium KLH11]
          Length = 587

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 8/168 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
            +++   S  D L+GL N      +L             LS++  D+D+FK+ ND  GH 
Sbjct: 397 RDQLHDQSVRDPLTGLFNRRHMTDTLRKSISRSQQTGAPLSLIAVDVDHFKKFNDTHGHD 456

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  +   L           R+GGEEF      ++ +E    A  +R+ +E   + 
Sbjct: 457 AGDMVLRAVGAALEQGCDRDEVACRIGGEEFMLILPDNTPEEVMTRAEQIRQAVEAIAVR 516

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
                   +TIS G+A    H      ++  AD+ALY AK  GRN+V 
Sbjct: 517 YGEKSLPRVTISVGVAHYPAHGTMPQDLMRTADEALYAAKDKGRNQVQ 564


>gi|89900220|ref|YP_522691.1| diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens
           T118]
 gi|89344957|gb|ABD69160.1| diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens
           T118]
          Length = 765

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 64/254 (25%), Positives = 106/254 (41%), Gaps = 29/254 (11%)

Query: 32  SIFFSIFIATVIFIANIFL-------FYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           +++  IFIA  I I  +         F +G++  + L         +++ S  ++L    
Sbjct: 260 TLYRDIFIAASIPIDAVLANWREQRNFILGVSLLFAL---------MILASGGLALWYLE 310

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
                 + +  S   I QL+  D L+ L N    +  L              +++F D+D
Sbjct: 311 RLAQARQAIASSKAEIEQLAFFDPLTNLPNRRLLMDRLQHALSANARSGRCGALLFLDLD 370

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ--EAAIL 195
           +FK +ND  GH VGD ++  ++ +L         V RLGG+EF       +E   EAA L
Sbjct: 371 HFKTLNDTLGHEVGDLLLQQVAQRLKTCLREQDTVARLGGDEFVVMLEDLAEHSLEAAAL 430

Query: 196 ANDLRKIIENS--QINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSG 251
           A  + + I  S  Q  +    +   T S G A      PI  + ++ +AD A+Y  K  G
Sbjct: 431 ARRIGEKILASLNQPYVLMTQTYRSTCSVGAALFEATTPITAADLLKQADIAMYQVKARG 490

Query: 252 RNRVVCFSDIENNT 265
           RN +  F      +
Sbjct: 491 RNDLCFFDPQMQAS 504


>gi|330875542|gb|EGH09691.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 786

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 88/175 (50%), Gaps = 10/175 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +L      +  LS  D L+G  N   F   +         +   LSI+  DID+FK
Sbjct: 610 SDITDLKRVEEELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSIIMLDIDHFK 669

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +A  LA  LR
Sbjct: 670 RINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVVCPGTRGGQAYQLALSLR 729

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + + N  I    G    +T S GIA     E I T++ RAD  +Y AK++GR+RV
Sbjct: 730 EGLRNQVI---EGVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQAGRDRV 781


>gi|323498036|ref|ZP_08103044.1| sensory box/GGDEF family protein [Vibrio sinaloensis DSM 21326]
 gi|323316912|gb|EGA69915.1| sensory box/GGDEF family protein [Vibrio sinaloensis DSM 21326]
          Length = 583

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 87/199 (43%), Gaps = 13/199 (6%)

Query: 78  ISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           + ++   +S   L E  L  +   + +LS +D L+ + N   F   L           + 
Sbjct: 385 VLIMARDVSERYLAEQRLEEANQELERLSFVDGLTQISNRRRFDEQLKTLWNLHTREKQP 444

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGS 187
           L+++  DIDYFK  ND +GH  GD V+  +++    V   +   V R GGEEF      +
Sbjct: 445 LTVMLCDIDYFKGYNDYYGHQSGDDVLVKVAEVFERVLPRSSDCVARYGGEEFGFILPNT 504

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAE--RCHKEPISTIIYRADQAL 244
           + + A  +A  + + IE   I   S      IT S G+        +    I+  AD AL
Sbjct: 505 TAEGAQKVAERIHQGIEELAIEHVSSQVASVITASIGLVSVVPQPLDSSDGIVALADSAL 564

Query: 245 YVAKKSGRNRVVCFSDIEN 263
           Y AK +GRN+       EN
Sbjct: 565 YQAKANGRNQTCVHHTSEN 583


>gi|323493699|ref|ZP_08098819.1| GGDEF domain-containing protein [Vibrio brasiliensis LMG 20546]
 gi|323312039|gb|EGA65183.1| GGDEF domain-containing protein [Vibrio brasiliensis LMG 20546]
          Length = 606

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 110/241 (45%), Gaps = 10/241 (4%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIG--LTPFYGLEYILVENLSLVIISITISLLL 82
           H   IY  I  ++FI  +I ++ I    I         L      +      +  I  LL
Sbjct: 363 HEVSIYIMITMALFIVLLILLSRIVTMPIVKLQKQVNALSAGFYPHSQRTERNDEIGRLL 422

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDY 138
                 +   L I   ++ +LS+ D L+ + N  A + +        ++  +I+  D+D 
Sbjct: 423 NAFED-MTNNLRIKERQLIKLSQFDPLTNIFNRRALMDAVNIIAAKQSQSSAILMLDLDN 481

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND +GH  GD V+  +++ +     +    GR+GGEEF      ++ + +  +A  
Sbjct: 482 FKSINDKYGHACGDDVLINVANLIKNEIRSSDIFGRMGGEEFTVVLPDTNLETSLRIAER 541

Query: 199 LRKIIENS--QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +RK +E +   + I  GP   IT+S G++        S  + +AD+ LY AK SGRN+VV
Sbjct: 542 IRKSVELNLGDVLIQYGPPAAITVSIGVSMWQDG-NFSKALAKADKHLYQAKHSGRNQVV 600

Query: 257 C 257
            
Sbjct: 601 Y 601


>gi|309702244|emb|CBJ01561.1| cellulose synthesis regulatory protein (signal transduction
           protein) [Escherichia coli ETEC H10407]
 gi|323937225|gb|EGB33505.1| diguanylate cyclase domain-containing protein [Escherichia coli
           E1520]
          Length = 564

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGASLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 542 LADRRLYLAKQAGRNRV-FASD 562


>gi|331653368|ref|ZP_08354373.1| cellulose synthesis regulatory protein [Escherichia coli M718]
 gi|331049466|gb|EGI21538.1| cellulose synthesis regulatory protein [Escherichia coli M718]
          Length = 564

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 542 LADRRLYLAKQAGRNRV-FASD 562


>gi|298487153|ref|ZP_07005202.1| GAF domain/GGDEF domain/EAL domain protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298158177|gb|EFH99248.1| GAF domain/GGDEF domain/EAL domain protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 960

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 11/194 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI----- 131
           T ++LL        +EL  +  R+   +  D L+GL N S     L    +   +     
Sbjct: 507 TANVLLEARVRDRTRELDQANARLQHENSHDSLTGLPNRSHLQHRLKQAWQDFCLNGQQL 566

Query: 132 --VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
             +F D+D FK IND+ GH  GD ++   +++L         + RLGG+EFA  ++ +  
Sbjct: 567 IVMFIDLDRFKMINDSLGHHCGDILLVQAAERLRSCMREGDLLARLGGDEFAVLSIDAPL 626

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
           Q    +A  +    E  Q  +    S+  + S G+  A+    E  + ++  AD A+Y  
Sbjct: 627 QAGTDIAQRILTAFE--QPFVIDDHSVFSSCSIGVVGADSRFHEEPADLLRDADTAMYRV 684

Query: 248 KKSGRNRVVCFSDI 261
           K  GR+    F+  
Sbjct: 685 KNGGRDSFAVFNQA 698


>gi|78485641|ref|YP_391566.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
 gi|78363927|gb|ABB41892.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
          Length = 891

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           I ++L    N +  ++  D L+ L N   F+  L          ++K++++F D+D FK+
Sbjct: 446 IQEQLQQQKNDLDFIAYHDPLTDLPNRILFLDRLTQAIHQAQRNHDKVALLFIDLDRFKE 505

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+FGH  GD V+     +L         V RLGG+EF         +   ++ N ++K
Sbjct: 506 INDSFGHASGDLVLIECGKRLKKAIREIDTVARLGGDEFTILI--DELKTNNVIINVVKK 563

Query: 202 IIENSQINISSGPSI-HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           II+     I    +I HIT S GI+         + ++  AD A+Y AK+ G+N    ++
Sbjct: 564 IIKTLSDPIFVNENIFHITASIGISIFPNDGTDANQLLQNADAAMYQAKEDGKNTYHFYT 623

Query: 260 DIENNTC 266
                  
Sbjct: 624 KEMTEQA 630


>gi|22298169|ref|NP_681416.1| hypothetical protein tll0627 [Thermosynechococcus elongatus BP-1]
 gi|22294348|dbj|BAC08178.1| tll0627 [Thermosynechococcus elongatus BP-1]
          Length = 845

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 12/184 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK---LSIVFFDID 137
           S + + E  +   +I   +  D ++GL N    I  L               +++F D+D
Sbjct: 377 SMTDVTEYHLIQEKILHDALHDAMTGLANRVLLIDRLTQAIARRQRRPNSLFAVLFLDVD 436

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA 196
            FK IND+ GH  GD+++  +  +L         + RLGG+EFA      S   +A  +A
Sbjct: 437 RFKVINDSLGHLAGDQLLIGIGQRLRACTRPEDTIARLGGDEFAILLEDLSDPAQAMKVA 496

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             +  ++   +  +  G  I  T S GIA      +    ++  AD A+Y AK  G+ R 
Sbjct: 497 ERILMVL--GRPFLLEGHEIFTTASIGIAFPWEDSQTAEDLLRDADTAMYRAKSLGKARY 554

Query: 256 VCFS 259
             FS
Sbjct: 555 EVFS 558


>gi|293607662|ref|ZP_06689994.1| GGDEF domain protein [Achromobacter piechaudii ATCC 43553]
 gi|292813947|gb|EFF73096.1| GGDEF domain protein [Achromobacter piechaudii ATCC 43553]
          Length = 687

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 100/221 (45%), Gaps = 13/221 (5%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLS 110
           G++  +    +    LS++ I++ +++L   L   + ++   L  +   + QL+  D L+
Sbjct: 211 GISAGWLAIAVTAVTLSVLAIALVVAVLDNRLEARTSALASSLAEANEELVQLALHDTLT 270

Query: 111 GLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            L N       +    E         +++FFD+D FK +ND +GH  GD ++  L+ ++ 
Sbjct: 271 KLPNRILLEDRMEQAIESANRHKGYFAVLFFDLDGFKAVNDAYGHHTGDALLIDLAQRIR 330

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
               T   V RLGG+EF   +      +AA +A+ L + I    +    G  + +T S G
Sbjct: 331 QALRTQDTVARLGGDEFIVLSEVIEPTDAANVADRLIEAIARPVMVY--GHEVLVTSSVG 388

Query: 224 IAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           IA      E   +++  AD A+Y AK+ G      F    N
Sbjct: 389 IAVYPNDGEDTHSLLTNADAAMYHAKRLGGTGYSFFEPSMN 429


>gi|264679145|ref|YP_003279052.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262209658|gb|ACY33756.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 522

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 60/228 (26%), Positives = 98/228 (42%), Gaps = 22/228 (9%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYIL-VENLSLVIISITISLLLGYISGSILKELFISYNRI 100
            +  A + L  + +    G   IL +   +    S+           ++ ++L  +   +
Sbjct: 305 ALLTAGVVLGLLAVVTLIGWRLILLIRQRAQAETSLM----------AVREKLLDANLEL 354

Query: 101 SQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +L+  D L+GL N   F                 LS++  D+D+FK  ND +GH  GD+
Sbjct: 355 ERLATQDSLTGLANRRRFDEVLQLEVRRAARDGTVLSLLLIDLDHFKGFNDRYGHVAGDE 414

Query: 154 VIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            +  +S QL      +     R GGEE A     ++ + A  +A +L K I    I   S
Sbjct: 415 CLKAVSRQLELSAKRSGDLAARYGGEELAIILPNTALEGAMRVAEELLKCIRGLDIAHES 474

Query: 213 GPSIHITISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRNRVVC 257
               H+T+S G A    +  ++    ++  ADQALY AK +GRNR  C
Sbjct: 475 SQFGHVTVSVGAASMQGRHGLASPLDLVEAADQALYRAKAAGRNRAEC 522


>gi|54307823|ref|YP_128843.1| putative c-di-GMP phosphodiesterase A-related protein
           [Photobacterium profundum SS9]
 gi|46912246|emb|CAG19041.1| putative c-di-GMP phosphodiesterase A-related protein
           [Photobacterium profundum SS9]
          Length = 679

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 10/204 (4%)

Query: 71  LVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
           L++ +  I+L+      +      E  +   ++ QL   D L+GL N   F   L S   
Sbjct: 217 LLVTTSDITLMGSPAKLVKLQDAAEHMMQQGQVEQLVHTDPLTGLYNRHGFSRRLESLIT 276

Query: 126 -NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
               L +++ DID FK IND+ GH +GD+V+  +S +L  +      +G LGG+EF    
Sbjct: 277 NETPLVMLYLDIDNFKNINDSLGHHIGDRVLQEISQRLRRLLPENAIIGHLGGDEFGIVL 336

Query: 185 LGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQ 242
                  A  ++A  +  +I  +Q       S H+  S G ++   +      ++  AD 
Sbjct: 337 SEPEHDRAGDLVAQQVISLI--NQPFDLHHFSKHLACSIGMVSYPGNGNDARILLQNADT 394

Query: 243 ALYVAKKSGRNRVVCFSDIENNTC 266
           A+Y AK  GRNR+V F++  N   
Sbjct: 395 AMYEAKNRGRNRLVKFNEAMNKEA 418


>gi|148253787|ref|YP_001238372.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1]
 gi|146405960|gb|ABQ34466.1| Putative diguanylate cyclase (GGDEF) with GAF and HAMP domains
           [Bradyrhizobium sp. BTAi1]
          Length = 646

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 59/168 (35%), Positives = 78/168 (46%), Gaps = 8/168 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +   S  D L+GL N    I                +S+V  DID+FK  NDN GH  GD
Sbjct: 437 LRDQSLRDALTGLNNRRYLIETARRELLRAARSRTPVSVVTLDIDHFKSFNDNHGHEAGD 496

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  + + L   F       RLGGEEF       + +EAA+ A +LR  +E   I+   
Sbjct: 497 TVLRHIGEILKATFADGEMPCRLGGEEFVVLLPNCTIEEAALRAEELRARVEALNISYGD 556

Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           G    +TIS G+A        +  I+  AD ALY AK+ GRNRV   S
Sbjct: 557 GMLPRVTISVGVAAYPEAGIDLPEILRVADGALYRAKQRGRNRVELAS 604


>gi|323705879|ref|ZP_08117451.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323534875|gb|EGB24654.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 666

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 11/175 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
             + E       +   S  D L+ + N   F+  L           +  S++ FD+D+FK
Sbjct: 493 RDISERKKFEELLYSQSVTDPLTNIYNRRFFMQILEQEAGRTKRSKKPFSLIMFDLDHFK 552

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND FGH  GD V+  ++D +        +  R GGEEF      +S   A  LA ++R
Sbjct: 553 NVNDRFGHAAGDTVLKGVADMVKGRIRKTDYFARWGGEEFIILLPETSLNNATNLAEEIR 612

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             I   +     G   ++T S G+ E    + I T++ R D  LY AK +GRN V
Sbjct: 613 MQISTVKF----GDVGNVTASFGVTEYRENDTIDTVLLRVDNMLYEAKNNGRNCV 663


>gi|298489177|ref|ZP_07007196.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298156259|gb|EFH97360.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 432

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 119/285 (41%), Gaps = 36/285 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL------FYIG 54
           + +S    L +WL  +    +     +M    + +++F+ +   +   +L          
Sbjct: 141 LEQSYPVELQVWLA-DIRWPALHGA-WMSLIQLSYAMFLVSFGVLIWQYLEKPRPLHAAQ 198

Query: 55  LTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           +    GL + L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL 
Sbjct: 199 IVGLLGLFWALPKTFILPFTLNILCSQVMLMIAAAVAHEAY-------QMAFRDELTGLP 251

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A    +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        
Sbjct: 252 GRRALNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAY 311

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------------------- 214
           R GGEEFA      +  E       +R+ I N +I + +                     
Sbjct: 312 RYGGEEFAIVFAAKTIDECMPHLEAIRETIANYEIQLRNKDSRPQDDQQGRQRRGGAQAG 371

Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S+ +T+S G+AER         ++  ADQALY AK +GRN VV +
Sbjct: 372 SVSVTVSIGVAERQPEHRTPEEVLKSADQALYAAKGAGRNCVVTY 416


>gi|228998829|ref|ZP_04158415.1| Sensory box/GGDEF family protein [Bacillus mycoides Rock3-17]
 gi|229006344|ref|ZP_04164028.1| Sensory box/GGDEF family protein [Bacillus mycoides Rock1-4]
 gi|228754990|gb|EEM04351.1| Sensory box/GGDEF family protein [Bacillus mycoides Rock1-4]
 gi|228761004|gb|EEM09964.1| Sensory box/GGDEF family protein [Bacillus mycoides Rock3-17]
          Length = 431

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 11/178 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           + + EL   Y    QL+ ID L+ + N   F   L          N+ ++++ FDID FK
Sbjct: 253 TDITELDELYQEQEQLAAIDSLTEIYNRLKFQQLLEEKWKSEKRVNQTMALILFDIDDFK 312

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD  +  L++ +     +     R GGE+F    + ++E+EA  +A  LR
Sbjct: 313 KVNDTYGHDFGDLALIQLAELMKSKIASQHIFARWGGEKFIILVINTTEKEAFQVAESLR 372

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             IE  Q +  S     +T S G+A          +I RAD ALY AKK+G+N+V  +
Sbjct: 373 FFIETKQFSSIS----KLTASFGVALYEQGMTKEELIQRADIALYEAKKNGKNQVRLY 426


>gi|167039476|ref|YP_001662461.1| diguanylate cyclase [Thermoanaerobacter sp. X514]
 gi|300915421|ref|ZP_07132734.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter sp. X561]
 gi|307725198|ref|YP_003904949.1| GAF sensor-containing diguanylate cyclase [Thermoanaerobacter sp.
           X513]
 gi|166853716|gb|ABY92125.1| diguanylate cyclase [Thermoanaerobacter sp. X514]
 gi|300888481|gb|EFK83630.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter sp. X561]
 gi|307582259|gb|ADN55658.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter sp. X513]
          Length = 554

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 104/216 (48%), Gaps = 16/216 (7%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112
           IG      ++  + +  S+ II I +      I+ +        Y  +++ S  D L+  
Sbjct: 345 IGCLAVLHVDTNVFDEDSVKIIEIIVDQASVAITNA------KRYYEVTKKSITDPLTKT 398

Query: 113 LNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N   F  +L          +E +S++ FD+D FK IND +GH VGD+V+  ++ ++   
Sbjct: 399 YNRRYFNDALMENIMRADETSEPVSLIMFDLDNFKLINDTYGHLVGDEVLKEVAKRIKNN 458

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
             +   V R GGEEFA      + ++A ++A  +R  + +  I    G  I++TI+ G+A
Sbjct: 459 VRSDDIVARFGGEEFAVILPKLTAEQAYMIAERIRNEVLSRPIRTDKG-DIYVTITGGVA 517

Query: 226 ERCHK-EPISTIIYRADQALYV-AKKSGRNRVVCFS 259
           +   K +    +I  AD+ALY   K  GRN++  + 
Sbjct: 518 DYPEKADSAEKLISHADRALYAGGKSKGRNKIAIYE 553


>gi|332524837|ref|ZP_08401028.1| diguanylate cyclase with PAS/PAC and GAF sensors [Rubrivivax
           benzoatilyticus JA2]
 gi|332108137|gb|EGJ09361.1| diguanylate cyclase with PAS/PAC and GAF sensors [Rubrivivax
           benzoatilyticus JA2]
          Length = 531

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 92/188 (48%), Gaps = 13/188 (6%)

Query: 81  LLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSI 131
           LL ++S  +    E   S  R+  +++ D L+GL N S         ++        L++
Sbjct: 337 LLKFVSAQVAAAIERKQSQLRLLHVAQHDALTGLPNRSLVRDRVATALARARRDGAGLAL 396

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQ 190
           ++ D+D FK +ND  GH VGD ++  ++ +L         VGR+ G+EF        +  
Sbjct: 397 LYLDLDQFKPVNDRCGHAVGDGLLQQVAQRLKHCVRASDTVGRMAGDEFVVLLSHLHAPD 456

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKK 249
           +A  +A  +R+ +   +    +G ++ ++ S G +    H E    ++ RAD+A+Y AK+
Sbjct: 457 DAPGVAEKIRQAL--CRPFEVAGHTVLVSPSIGLVGYPAHGEDADQLVQRADEAMYAAKR 514

Query: 250 SGRNRVVC 257
           +G NRV  
Sbjct: 515 AGGNRVCV 522


>gi|331014876|gb|EGH94932.1| GGDEF domain protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 677

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 85/184 (46%), Gaps = 11/184 (5%)

Query: 82  LGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           L     S+ +E            Q + ID L+GL N +++   L             L +
Sbjct: 492 LASRVASMEQEALGFRTHLEEQRQKALIDPLTGLPNRASWGERLEQEMADWQRDKNSLLV 551

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+DYFK+IND +GH  GDKV+  +++          F+ R GGEEF      +    
Sbjct: 552 CILDLDYFKRINDGYGHLAGDKVLKIVANVFKKRLRPADFLARFGGEEFVMLLPATLLGA 611

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              L ++LR  +E    +   G  + IT+S G+      E   T I RADQALY AK++G
Sbjct: 612 GLTLLDELRTAVELCPFHFK-GERVTITVSIGVTALRTGERSDTAIKRADQALYRAKENG 670

Query: 252 RNRV 255
           RNRV
Sbjct: 671 RNRV 674


>gi|237653253|ref|YP_002889567.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
 gi|237624500|gb|ACR01190.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
          Length = 710

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
             + +       + QL+  D L+GL N   F+         +       +++  D+D+FK
Sbjct: 509 QDISQRKAMEESLLQLATSDPLTGLWNRRHFVEVVRGELGRVRRNQAPAALLLMDLDFFK 568

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND  GH  GD+V+   +  +           RLGGEEFA          A   A+ LR
Sbjct: 569 RINDTHGHAAGDEVLRHFTATVSAQLREADVFARLGGEEFAVLLPSIDALGAVRAADRLR 628

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +++ +S  ++ SG  +H ++S G        E       RAD+ALY AK +GRNRVV 
Sbjct: 629 RVVADSPASVDSGA-LHYSVSIGATMLDAADEGYEAAYARADEALYAAKHAGRNRVVL 685


>gi|220933986|ref|YP_002512885.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995296|gb|ACL71898.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 803

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 10/190 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
           +I   +  E   +  ++  L+  D L+GL N   F   L         ++ +L++++FD+
Sbjct: 363 WIYEDVTHERQTA-EQLLYLAEHDALTGLCNRHCFEQRLEKAMASAQRHHHRLALLYFDL 421

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK IND+FGH  GD V+  ++ +L  V      + R+GG+EFA      S +EA  LA
Sbjct: 422 DEFKAINDSFGHRAGDAVLVRVASELAPVVRGGDMLARVGGDEFALLTQIDSIEEARSLA 481

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             L   +         G  +  T S GIA    H E    ++ RAD A+Y AK  G+N  
Sbjct: 482 ARLCGTVAKIPFRFR-GTGVRSTASVGIAVYPEHGETTEDLVARADIAMYQAKGLGKNTW 540

Query: 256 VCFSDIENNT 265
             +    + +
Sbjct: 541 SVYDPERDRS 550


>gi|209549612|ref|YP_002281529.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535368|gb|ACI55303.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 355

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 8/183 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKL-----SIVFFDIDYFKQIN 143
           + ++    +   +++  D L+ L N  AF   L + +N        +++  DID FK+IN
Sbjct: 162 MDQVRKELDEYKRIANTDSLTRLSNRRAFDERLAAVFNNPGMRPVTALLLADIDNFKKIN 221

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHPVGDK++A ++  +       +FV R GGEEFA    G++ +E   +A  +R+ +
Sbjct: 222 DTYGHPVGDKILATVASVIRSNVRRDVFVARAGGEEFALIIDGNTPEEITAIAERIRRTL 281

Query: 204 ENSQINISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E +    S     +  IT+S GI      E    +  + D ALY AK +GRN  + + D 
Sbjct: 282 ETTPFKNSRTRVNYGPITVSIGICMASSAEDAGELYSKTDIALYGAKNAGRNCTILYQDG 341

Query: 262 ENN 264
              
Sbjct: 342 MQK 344


>gi|148358488|ref|YP_001249695.1| GGDEF domain-containing sensory box protein [Legionella pneumophila
           str. Corby]
 gi|148280261|gb|ABQ54349.1| sensory box protein, GGDEF family protein, LssE [Legionella
           pneumophila str. Corby]
          Length = 741

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 90/188 (47%), Gaps = 11/188 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           S   + E      ++   +  D L+ L N    I  +         +  K +I+FFD+D 
Sbjct: 297 SFRDITEQTRLKEKLEYQATHDALTNLPNRLLLIDRIEHAISGYARHKMKFAILFFDLDR 356

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK IND+  H  GD+++  ++++L  +      + RLGG+EF       +SE++ A +A 
Sbjct: 357 FKMINDSLSHEAGDQLLCAVAERLRSLVRKEDTLARLGGDEFVMLFQSFNSEEQIAGVAQ 416

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            + K  +  +    +   I+I +S GI+      + ++T++  AD A+Y AK  G N+  
Sbjct: 417 KILKSFQ--KPFHIAERDINIHVSIGISVYPTDGKTVNTLLSNADMAMYQAKFRGGNQFS 474

Query: 257 CFSDIENN 264
            +++  N 
Sbjct: 475 FYTEKLNK 482


>gi|81300620|ref|YP_400828.1| diguanylate cyclase [Synechococcus elongatus PCC 7942]
 gi|81169501|gb|ABB57841.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Synechococcus
            elongatus PCC 7942]
          Length = 1037

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 11/181 (6%)

Query: 87   GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---------SYNEKLSIVFFDID 137
             + + E      ++ Q +  D L+G+LN   FI+              +  LS+V  DID
Sbjct: 848  STDITEQKKLEQKLQQQATTDALTGILNRRQFITLAQAELNRIYRIQRDTSLSLVIIDID 907

Query: 138  YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            +FK IND++GH VGD+V+   ++             RLGG+EF      ++ ++A  + +
Sbjct: 908  HFKTINDSYGHTVGDQVLILWTNICQQNIREVDIFARLGGDEFVLMLPETNGKQAYQVMD 967

Query: 198  DLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             +R+++    +++    +I ITIS GIA    +   +   + RAD+ALY AK+ GR+R++
Sbjct: 968  RIRQLVIQQSLHLPQ-QAIAITISVGIAVWTPEILTLDQFLERADRALYQAKQQGRDRII 1026

Query: 257  C 257
             
Sbjct: 1027 L 1027


>gi|88799699|ref|ZP_01115274.1| GGDEF domain protein [Reinekea sp. MED297]
 gi|88777593|gb|EAR08793.1| GGDEF domain protein [Reinekea sp. MED297]
          Length = 315

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 8/177 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQI 142
           L++L  S   +S++++ D L+ + N   FI            Y    S    D+D FK I
Sbjct: 131 LQQLESSVETLSEIAQTDELTHVANRRGFIQTVERELDRCRRYETPASFALLDLDLFKPI 190

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH VGD+ +  ++D +         +GR+GG+EFA     + ++ A  + + +R  
Sbjct: 191 NDRYGHQVGDQALIHVADVVSSHLRPYDTLGRIGGDEFAIFLRETEQESAVDVCDRIRLA 250

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +E+S   I + P + + +S G+  R +      +   AD ALY AK  GRN VV F 
Sbjct: 251 VESSPFLIENQPVV-LRLSFGVTTRTNATGFEQLYKEADIALYRAKSRGRNCVVLFD 306


>gi|95928597|ref|ZP_01311344.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95135387|gb|EAT17039.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 418

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 68/216 (31%), Positives = 100/216 (46%), Gaps = 21/216 (9%)

Query: 65  LVENLSLVIISITI-SLLLGYISGSILKELFISYNRISQL-------SRIDCLSGLLNHS 116
           L   LS VI ++ I  ++  YI    LK+    Y ++ QL       S  D L+ L N  
Sbjct: 202 LKTILSFVIFTLAILPIIYAYIQA--LKQKNREYQQVHQLYLDQSKRSITDPLTRLYNRF 259

Query: 117 AFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
                L        +YN   +++  D+DYFK IND +GH VGD V+  ++  L     + 
Sbjct: 260 KLDEELETAFSLFQNYNRTFALIMTDLDYFKAINDRYGHQVGDTVLQSIATLLKESSRSA 319

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
             VGR GGEEF      +    A  LA  LR  I +     +      +T S G+AE   
Sbjct: 320 DVVGRWGGEEFMIICRDADSNGAFHLAEKLRTEIAS----YARKHEYSLTASFGVAEPQT 375

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           ++ +  ++   D+ALY AK++GRN+ V  SD    T
Sbjct: 376 QQSLPQLLQSVDEALYAAKRAGRNQTVKASDDLRAT 411


>gi|330830637|ref|YP_004393589.1| response regulator PleD [Aeromonas veronii B565]
 gi|328805773|gb|AEB50972.1| Response regulator PleD [Aeromonas veronii B565]
          Length = 373

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 65/245 (26%), Positives = 112/245 (45%), Gaps = 16/245 (6%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL--VIISITISLL 81
           P+  +  F+I F I ++  + +A + L  + L  +  +   +    +L  V +    ++ 
Sbjct: 123 PYLLITLFAI-FPIPLSLGLQLAGVVLVTMLLGHWLLVGQSIWSQATLNQVWVLGMFTMA 181

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFF 134
             ++    L  L     R+ + S  D L+G++N    +  L           +  +++  
Sbjct: 182 SCWVQCGQLNMLL----RLYRESTTDELTGMMNRRLLMKQLEQARIRLQLKKKPFAVMLL 237

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAA 193
           D+D FK+IND +GH  GD V+  ++  L       M +GR GGEEFA           A+
Sbjct: 238 DLDRFKRINDIYGHLAGDAVLKEVATTLGEQLEPDMVLGRYGGEEFAILMHNCADPALAS 297

Query: 194 ILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            +A  LR  +E   +   +    + +T+S GIA     + I  +I RAD+ LY AK +GR
Sbjct: 298 KMAERLRIAVEARLVKSPTSDELLEVTVSIGIAMARSDDTIDILINRADECLYQAKMAGR 357

Query: 253 NRVVC 257
           N VV 
Sbjct: 358 NCVVV 362


>gi|325929521|ref|ZP_08190635.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
 gi|325540031|gb|EGD11659.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
          Length = 569

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 8/173 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNF 146
                 + + S  D L+GL N      SL             LS++  D+D+FKQ ND+ 
Sbjct: 389 LRLRESLRRQSIRDALTGLYNRRYLEESLSHELARCARRGLPLSVLMLDVDHFKQFNDSQ 448

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD ++A + + L+          R GGEEF      +  +EA  +A  +R  I   
Sbjct: 449 GHAGGDLLLAAVGELLLTRLRAEDVACRYGGEEFTVLLPEADGEEAMRVAEQIRSYIAAL 508

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            ++  +     +T S G+A      E  +++I +AD ALY AK +GRNRV  +
Sbjct: 509 AVSDGARALPKVTASIGVASFPADGEQGASLIQKADAALYRAKHAGRNRVERY 561


>gi|237802423|ref|ZP_04590884.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331025280|gb|EGI05336.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 432

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 119/293 (40%), Gaps = 36/293 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL------FYIG 54
           + +S    L  WL  +    +    ++M    + +++F+ +   +   +L          
Sbjct: 141 LEQSYPVELQAWLA-DIRWPALHG-SWMSLIQLSYAMFLMSFAVLIWQYLEKPRPLHAAQ 198

Query: 55  LTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           +    GL + L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL 
Sbjct: 199 IVGLLGLFWALPKTFILPFTLNILCSQVMLMIAAAVAHEAY-------QMAFRDELTGLP 251

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A    +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        
Sbjct: 252 GRRALNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAY 311

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------------------- 214
           R GGEEFA      + +E       +R+ I   +I + +                     
Sbjct: 312 RYGGEEFAIVFAAKTIEECLPHLEAIREAIATYEIQLRNKDSRPQDDQQGRQRRSGAQAG 371

Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           S+ +T+S G+AER         ++  ADQALY AK +GRN VV    +     
Sbjct: 372 SVSVTVSIGVAERQPEHRTPEEVLKCADQALYAAKGAGRNCVVSHEHLNRRGA 424


>gi|170690417|ref|ZP_02881584.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia graminis C4D1M]
 gi|170144852|gb|EDT13013.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia graminis C4D1M]
          Length = 667

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 92/187 (49%), Gaps = 11/187 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYF 139
           SG+ + E  ++  R+ QL+  D L+GL N +A    + +        E + ++F D+D F
Sbjct: 220 SGTDITEERLAQERLRQLANTDSLTGLPNRNAIQDYIRTAIEEAAPGESVGVLFLDLDNF 279

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND++GH  GD++I  +S  + +       + RLGG+EF   A   +  E    A  +
Sbjct: 280 KKVNDHYGHVFGDRLIRDVSAAIGMCLNEGDTLARLGGDEFIVLAAKGTAHELEATAQRI 339

Query: 200 RKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +E  +   S G   ++   S GIA    H + + ++I  AD A+YVAK  G+     
Sbjct: 340 ---LERMRTPFSLGLVEVYTGCSIGIARYPEHGDNLESLIRSADTAMYVAKDEGKRTHRV 396

Query: 258 FSDIENN 264
           FS   N 
Sbjct: 397 FSPEMNR 403


>gi|148378336|ref|YP_001252877.1| GGDEF/HD domain protein [Clostridium botulinum A str. ATCC 3502]
 gi|153931217|ref|YP_001382735.1| GGDEF/HD domain-containing protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935963|ref|YP_001386286.1| GGDEF/HD domain-containing protein [Clostridium botulinum A str.
           Hall]
 gi|153938239|ref|YP_001389700.1| GGDEF/HD domain-containing protein [Clostridium botulinum F str.
           Langeland]
 gi|148287820|emb|CAL81886.1| putative signaling protein [Clostridium botulinum A str. ATCC 3502]
 gi|152927261|gb|ABS32761.1| GGDEF/HD domain protein [Clostridium botulinum A str. ATCC 19397]
 gi|152931877|gb|ABS37376.1| GGDEF/HD domain protein [Clostridium botulinum A str. Hall]
 gi|152934135|gb|ABS39633.1| GGDEF/HD domain protein [Clostridium botulinum F str. Langeland]
          Length = 567

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 79/273 (28%), Positives = 126/273 (46%), Gaps = 36/273 (13%)

Query: 28  MIYFSIFFSIFIATVIFIAN---IFLFYIGLTPFY-GLEY-ILVENLSLVIISIT----- 77
           ++   +FF + + T  + +    +FLF I +T    G++Y I++  L+  II I      
Sbjct: 91  IVLILLFFVVVLGTGTYASQYKFLFLFMIIITTIQSGMKYGIIIACLASFIILIMDIVCA 150

Query: 78  -----------------ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
                            + +L  +  G  +K       ++  L   D L+ + NH  F  
Sbjct: 151 PNLVVNEYFEQDLILAGVFILTAWPLGFYVKVENEHIEKLESLVNKDGLTDVYNHRFFHD 210

Query: 121 SL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           +L          NE LS++F DIDYFK  ND +GH  GD+V+  + + L         V 
Sbjct: 211 ALSKEVIECEEKNEALSMIFIDIDYFKHYNDLYGHQKGDQVLKTIGEILKNNTRKEDIVA 270

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERCHKEP 232
           R GGEEFA     +SEQ+A  +A  +RK IE +      + P+ ++T+S GI+   +K  
Sbjct: 271 RYGGEEFAVLLPNTSEQDAINIAEKIRKKIEYTYFEGEENQPNGNLTVSMGISVYPYKAK 330

Query: 233 IS-TIIYRADQALYVAKKSGRNRVVCFSDIENN 264
               +I  AD ALY AK   +NRV  ++ I + 
Sbjct: 331 SDMELIKSADDALYRAKFFNKNRVEAYTSILDE 363


>gi|117620579|ref|YP_854982.1| GGDEF family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117561986|gb|ABK38934.1| GGDEF family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 301

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 9/178 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDY 138
           + +++ +I ++ +    R+   S  D L+GL N   F              ++V  DID+
Sbjct: 120 VAWVTRNITRQ-YELQQRLKLQSETDQLTGLYNRRYFFEHCRQRRAGEAPCALVMLDIDH 178

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQIND FGH  GD+ +      +           R GGEEF     G SE +   LA  
Sbjct: 179 FKQINDRFGHQQGDRALQRFCACVAAQLRADDMFVRSGGEEFLILLPGMSEPDLLALAER 238

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +R  +     + ++      T+S G       E I+  + RAD+ LY AK++GRNRV 
Sbjct: 239 IRAAVAALPADPAA-----FTVSLGTTLVRPGEEINQALARADEWLYRAKRAGRNRVA 291


>gi|116873608|ref|YP_850389.1| GGDEF domain-containing protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116742486|emb|CAK21610.1| GGDEF domain protein [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 357

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 71/234 (30%), Positives = 108/234 (46%), Gaps = 12/234 (5%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
           + +F    IA+ + + N+ L  +   P Y     +  +++LVI +I+  L+   I     
Sbjct: 129 WGVFVLNIIASGLVVINLHLI-LASEPNYWFNMFMFVSIALVIGAISAGLMSNMIKS--- 184

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNF 146
           K+LF  Y    Q S +D L+ L N   F   +       + +++++  DIDYFK IND +
Sbjct: 185 KQLFQKY---EQDSTLDYLTKLSNVRQFDEKINHVMDDGSRQVTLMLIDIDYFKNINDTY 241

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD ++  L+  L           R GGEEF+   L     E    A  +RK  E  
Sbjct: 242 GHDAGDAILKQLAIILKGNTADGSEAFRNGGEEFSIVLLDCFIDEGNYFAEKIRKETEEY 301

Query: 207 QINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFS 259
              I  G ++ ITIS G++        S  +   AD+ALY AK +GRNRV    
Sbjct: 302 DFRIPDGQTVKITISIGVSSCTDGASTSEGLFKAADEALYKAKLTGRNRVCVAD 355


>gi|85712314|ref|ZP_01043365.1| Signaling protein with a periplasmic binding domain and GGDEF
           domain [Idiomarina baltica OS145]
 gi|85693941|gb|EAQ31888.1| Signaling protein with a periplasmic binding domain and GGDEF
           domain [Idiomarina baltica OS145]
          Length = 474

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 14/194 (7%)

Query: 76  ITISLLLGYISGSILKELFI---SYNRISQLSRIDCLSGLLNHSAFISSL-------GSY 125
           + + L + + +  + +E+ +   +  RI  ++  D L+GL N       L          
Sbjct: 280 VLVFLFIAFRNSRLRREVKLRKDAEKRIRYVATHDELTGLPNRKLLSDRLEQAMLQAERS 339

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           N+  +I+F D+D FKQIND +GH VGD+++   S ++  +      V R GG+EF     
Sbjct: 340 NKAFAIMFLDLDGFKQINDKYGHEVGDELLIHASQRMQSMLRRSDTVCRYGGDEFVILLP 399

Query: 186 GS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQA 243
            + +   A  +A  L  ++  ++        + ++ S G++    H    + ++  AD+A
Sbjct: 400 TTPTTSAALAVARKL--VVHIARPYQIGTHMLEVSTSIGVSLFPQHGSDENALLRAADKA 457

Query: 244 LYVAKKSGRNRVVC 257
           +Y AK +G+N V  
Sbjct: 458 MYAAKDAGKNDVRL 471


>gi|303246638|ref|ZP_07332916.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
 gi|302491978|gb|EFL51856.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
          Length = 730

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 85/179 (47%), Gaps = 9/179 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L +L +    +   S  D L+GL N   F  +L             LS++  DIDYFK  
Sbjct: 553 LTQLRL-QQELRSYSYEDALTGLKNRRFFDDALEREIAQALKQQSDLSLIMLDIDYFKFF 611

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND++GH  GD+ + FL++Q+   F     + R GGEEF      +   E      +L + 
Sbjct: 612 NDSYGHAAGDEALRFLAEQMNKTFRHTDIICRYGGEEFVILMPHAKASECHARVLELLQT 671

Query: 203 IENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           I  S I  +      IT+S GI+      E    ++  AD+ALY AK+ GRNRVV + +
Sbjct: 672 IARSTIQYAGRDLGTITLSVGISSWPSFVENPQELLSHADRALYQAKERGRNRVVLYGE 730


>gi|114154899|sp|Q83KM9|YEDQ_SHIFL RecName: Full=Putative cellulose synthesis regulatory protein
          Length = 569

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LLL  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 367 LTLLWALFTTMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 426

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 427 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 486

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G++  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 487 CVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 546

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 547 LADRRLYLAKQAGRNRV-FASD 567


>gi|94263461|ref|ZP_01287274.1| GGDEF:GAF [delta proteobacterium MLMS-1]
 gi|93456191|gb|EAT06330.1| GGDEF:GAF [delta proteobacterium MLMS-1]
          Length = 488

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 8/173 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQIND 144
           E    + R+ + +  D L+GL N      S            + ++++  D+D+FK++ND
Sbjct: 185 ERAQLFERVRREAMHDELTGLYNRRYLQDSGRRELHKAERARQPVALLLLDLDHFKEVND 244

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+  L+  L           R GGEEF      ++  EA  LA+ LR+++E
Sbjct: 245 YWGHLRGDRVLRELAGLLRCNLRQSDVPARYGGEEFVVLLPDTASGEAGQLADKLRRLVE 304

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
              +         +T + G+A        +  ++  AD+ LY  K +GRN+VV
Sbjct: 305 EQLVLEEGEERRLVTATIGVAAYPADGNNLEELLAVADRRLYAGKTAGRNQVV 357


>gi|91776259|ref|YP_546015.1| diguanylate cyclase [Methylobacillus flagellatus KT]
 gi|91710246|gb|ABE50174.1| diguanylate cyclase (GGDEF domain) [Methylobacillus flagellatus KT]
          Length = 487

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 82/174 (47%), Gaps = 10/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L    +++  ++  D L+GL N  AF   +             L+ +  D+D+FK IND 
Sbjct: 311 LRRYQDKLETMATTDTLTGLPNRRAFDVVIDVFLNENERARSTLAFILLDVDHFKSINDR 370

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD V+  ++  +        F+ R GGEEF  A     E  A +LA  +R  IEN
Sbjct: 371 LGHLGGDYVLTVVARIIKGNTRAADFICRWGGEEFLIAIKDCDEHNALLLAEKIRSAIEN 430

Query: 206 SQINISSGPSIHITIS--AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             I    G  + IT S   G+      E +  ++ RAD+A+Y AK +GRN+V  
Sbjct: 431 ELIAY-QGSQVAITASLGVGVGVARAGEKLEPVLERADKAMYAAKAAGRNQVQL 483


>gi|331017357|gb|EGH97413.1| GGDEF domain protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 322

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 113/225 (50%), Gaps = 10/225 (4%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
              + +    L P   L   + +  + + + +   + +G+++  +  +L+   N +  LS
Sbjct: 89  ALGVLISLAVLNPVVNLNGNMTQIYACLPVLVIYPIFIGWMNHQVTLKLWEHRNILRTLS 148

Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           R D L+GLLNH A+   L        + +++  I   DID+FK IND +GH +GD V+  
Sbjct: 149 RTDSLTGLLNHGAWKDLLDLEFAKSQNQHQECVIALIDIDHFKIINDTYGHLMGDTVLQN 208

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +S+ L+        +GR GG+EF      +S  +A  +   +R  I+  ++  S    + 
Sbjct: 209 ISEALIENLRDSDLIGRCGGDEFCVILPNTSLLQAREILERMRLAID--ELTYSLHCDLK 266

Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            ++S GIA    +    S+ ++ AD+ALY+AK +GRNRVV   D 
Sbjct: 267 ASLSVGIAAYSPELPDASSWLHEADKALYLAKSTGRNRVVSAEDA 311


>gi|169342866|ref|ZP_02863897.1| GGDEF/HD domain protein [Clostridium perfringens C str. JGS1495]
 gi|169299123|gb|EDS81195.1| GGDEF/HD domain protein [Clostridium perfringens C str. JGS1495]
          Length = 563

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 102/227 (44%), Gaps = 11/227 (4%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI 100
            V  +++  +  I L      +  +     L++  + +  L  +  G  +K        +
Sbjct: 132 VVSVVSSAIILAIDLIFSGNADVNIYFQNDLILAGVFV--LTAWTLGFYVKTENDHIKEL 189

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
             L   D L+G+ NH  F   L          NEKLS++F DIDYFK  ND +GH  GD+
Sbjct: 190 QTLVNEDGLTGVYNHRYFYDKLREKMHISEVENEKLSLIFMDIDYFKHYNDLYGHQKGDE 249

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISS 212
            +  +   L  +      V R GGEEFA     +SE+EA  +A  +R  +E +      +
Sbjct: 250 ALKKIGKLLKNIARENDLVARYGGEEFAIILPNTSEEEATKIAERIRNKVEKTYFEGQEN 309

Query: 213 GPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCF 258
            P+ + T+S GIA    K      ++  AD ALY AK   +NRV  +
Sbjct: 310 QPNANFTVSVGIAVFPDKAKSELELVKCADDALYRAKFFHKNRVETY 356


>gi|15831948|ref|NP_310721.1| hypothetical protein ECs2694 [Escherichia coli O157:H7 str. Sakai]
 gi|168752213|ref|ZP_02777235.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4113]
 gi|168758269|ref|ZP_02783276.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4401]
 gi|168778100|ref|ZP_02803107.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4196]
 gi|168801731|ref|ZP_02826738.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC508]
 gi|195939262|ref|ZP_03084644.1| hypothetical protein EscherichcoliO157_23048 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208810635|ref|ZP_03252511.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4206]
 gi|208816680|ref|ZP_03257800.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4045]
 gi|209398052|ref|YP_002271072.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4115]
 gi|254793606|ref|YP_003078443.1| putative diguanylate cyclase [Escherichia coli O157:H7 str.
           TW14359]
 gi|291283132|ref|YP_003499950.1| Cellulose synthesis regulatory protein [Escherichia coli O55:H7
           str. CB9615]
 gi|20140592|sp|Q8XB92|YEDQ_ECO57 RecName: Full=Cellulose synthesis regulatory protein
 gi|13362162|dbj|BAB36117.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187766826|gb|EDU30670.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4196]
 gi|188013902|gb|EDU52024.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4113]
 gi|189354892|gb|EDU73311.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4401]
 gi|189376152|gb|EDU94568.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC508]
 gi|208725151|gb|EDZ74858.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4206]
 gi|208731023|gb|EDZ79712.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4045]
 gi|209159452|gb|ACI36885.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4115]
 gi|209766718|gb|ACI81671.1| hypothetical protein ECs2694 [Escherichia coli]
 gi|209766720|gb|ACI81672.1| hypothetical protein ECs2694 [Escherichia coli]
 gi|209766722|gb|ACI81673.1| hypothetical protein ECs2694 [Escherichia coli]
 gi|209766724|gb|ACI81674.1| hypothetical protein ECs2694 [Escherichia coli]
 gi|209766726|gb|ACI81675.1| hypothetical protein ECs2694 [Escherichia coli]
 gi|254593006|gb|ACT72367.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str.
           TW14359]
 gi|290763005|gb|ADD56966.1| Cellulose synthesis regulatory protein [Escherichia coli O55:H7
           str. CB9615]
 gi|320647162|gb|EFX15995.1| putative diguanylate cyclase YedQ [Escherichia coli O157:H- str.
           493-89]
 gi|320652447|gb|EFX20745.1| putative diguanylate cyclase YedQ [Escherichia coli O157:H- str. H
           2687]
 gi|320658049|gb|EFX25811.1| putative diguanylate cyclase YedQ [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658620|gb|EFX26314.1| putative diguanylate cyclase YedQ [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 564

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 542 LADRRLYLAKQAGRNRV-FASD 562


>gi|91978607|ref|YP_571266.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91685063|gb|ABE41365.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB5]
          Length = 777

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 85/187 (45%), Gaps = 12/187 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKL--SIVFFDIDYF 139
            + E   +  RI  L+R D L+GL N   F   +          N+    +++F D+D F
Sbjct: 321 DITERRNAEARIIHLARYDELTGLPNRVNFHDEIERILTASQGQNKAALSALLFIDLDQF 380

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           KQ+ND  GHP GD+++  ++D+L  +     FV R GG+EF        S ++AA+LA  
Sbjct: 381 KQVNDTLGHPCGDRLLCAVADRLRDMLRPEDFVARFGGDEFVVFQQNIRSNEDAAVLARR 440

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   + +    +     + I  S GIA          ++  AD ALY AK  GR     F
Sbjct: 441 IVDRLSDR--YLIDHHVVEIGASIGIALTAPATRADILLKNADMALYRAKADGRGTYCFF 498

Query: 259 SDIENNT 265
            +    T
Sbjct: 499 REEMAKT 505


>gi|239817289|ref|YP_002946199.1| diguanylate cyclase [Variovorax paradoxus S110]
 gi|239803866|gb|ACS20933.1| diguanylate cyclase [Variovorax paradoxus S110]
          Length = 534

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 10/196 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------S 124
           +I S+   L+      S    L  +  R+  L++ D L+GL N   F + L        +
Sbjct: 337 LIRSMRRRLVAELQLRSARDALTEANERLEHLAQEDGLTGLANRRYFDARLALNFQQALA 396

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAA 183
               L++V  D+D FK+ ND +GH  GD  +  +S  L   V+ +   V R GGEE    
Sbjct: 397 SQTALAVVMVDVDEFKKYNDLYGHLEGDDCLRRVSQALRSAVWRSSDLVARYGGEEMVLL 456

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRAD 241
              +    A  +A   R  + + QI  ++     +++S G+A            ++  AD
Sbjct: 457 LPATDAAGALEVAQRARLAVADLQIPHAASALGTVSVSLGVASGVPQPGSTPFELLRAAD 516

Query: 242 QALYVAKKSGRNRVVC 257
           +ALY+AK+ GRN V  
Sbjct: 517 EALYLAKQEGRNTVRV 532


>gi|82776357|ref|YP_402706.1| hypothetical protein SDY_1050 [Shigella dysenteriae Sd197]
 gi|309789418|ref|ZP_07684008.1| cellulose synthesis regulatory protein [Shigella dysenteriae 1617]
 gi|81240505|gb|ABB61215.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|308922812|gb|EFP68329.1| cellulose synthesis regulatory protein [Shigella dysenteriae 1617]
          Length = 558

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 536 LADRRLYLAKQAGRNRV-FASD 556


>gi|301644585|ref|ZP_07244575.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|301077093|gb|EFK91899.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
          Length = 558

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 536 LADRRLYLAKQAGRNRV-FASD 556


>gi|239908809|ref|YP_002955551.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239798676|dbj|BAH77665.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 819

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 79/170 (46%), Gaps = 8/170 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDK 153
            + S  D L+GL N     S +  Y E       ++  +  D+DYFKQ+ND +GH  GD 
Sbjct: 644 REQSLRDPLTGLHNRRFLDSYMHQYEEISRRTEKRVGFLMVDVDYFKQVNDKYGHLAGDA 703

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  LS  L           R GGEEF            +++A  +R+ +E     +  G
Sbjct: 704 VLKELSGLLRQTVRAADLAVRFGGEEFLILLHEVRPDFTSVVAEKIRQTVETHAFPLPDG 763

Query: 214 PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            +IH T+S G AE           I  AD ALY AK+SGRN+V+CF    
Sbjct: 764 STIHKTVSVGFAEYPTDAASFYKAIKFADVALYKAKESGRNKVLCFEQSM 813


>gi|206558832|ref|YP_002229592.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
 gi|198034869|emb|CAR50741.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
          Length = 452

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 64/259 (24%), Positives = 119/259 (45%), Gaps = 13/259 (5%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           L +W+ +   L +    T  +  ++   + IA +  + +  L  +  T  + + + +   
Sbjct: 196 LVVWILNALALVAVL-VTGRLRTTLDLWLAIAVLACLTDTTLNLLS-TNRFTVGWYVARV 253

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------S 121
            S+    + + +L   ++  + ++LF ++  + + S  D L+G  N S F          
Sbjct: 254 FSMFTPGVLVCVLAWEVT-MLYQQLFEAHATLIRSSARDGLTGAFNRSHFNDHFHTLFLQ 312

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEF 180
                E LS++  D+D FK  ND FGH  GD  +  +++ L      P   V R GGEEF
Sbjct: 313 ARRQGEPLSLLMVDVDRFKAYNDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEF 372

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIY 238
           A     +  + A ++A+++R+ +    + +   P+  +++S G A     +      +I 
Sbjct: 373 AIVLPNTGARGARVVADEVREAVLRLDLAMPDSPAGRVSVSVGCATVSADDLSTPDALIE 432

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD ALY AK +GRNRVV 
Sbjct: 433 AADAALYRAKDAGRNRVVV 451


>gi|307824411|ref|ZP_07654636.1| diguanylate cyclase with PAS/PAC sensor [Methylobacter
           tundripaludum SV96]
 gi|307734395|gb|EFO05247.1| diguanylate cyclase with PAS/PAC sensor [Methylobacter
           tundripaludum SV96]
          Length = 669

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 11/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            +     + +R+  LS  D L+GL N   F   L          N+ +S+ + D+D FK 
Sbjct: 484 DITLRKQADDRLIWLSYYDELTGLANRRLFADQLQQIISMAHRTNDSVSLFYMDLDRFKF 543

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH +GD+V+   + ++           RLGG+EFA     +    AA +A  + K
Sbjct: 544 VNDTMGHAIGDEVLKETARRISSTLRDSDIAARLGGDEFALLLPETDAAGAAPVAEKILK 603

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFSD 260
            +   +  I       +  S GIA          T+++ AD A+Y AK+ G++ V  +S+
Sbjct: 604 KLR--EPYIFDELEFTLGGSIGIAVYPQNTSSGETLVHFADTAMYHAKQ-GKHGVSFYSE 660

Query: 261 IENN 264
               
Sbjct: 661 SMQQ 664


>gi|262273086|ref|ZP_06050903.1| GGDEF family protein [Grimontia hollisae CIP 101886]
 gi|262222842|gb|EEY74150.1| GGDEF family protein [Grimontia hollisae CIP 101886]
          Length = 341

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 89/172 (51%), Gaps = 7/172 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNF 146
            L  + ++ ++ +  D L+G+ N  A  + L +       +  S++  D+D+FK+ ND +
Sbjct: 167 RLEDTLHKANEEALHDALTGIYNRRALDAELEALVATPPPKGFSLLLCDLDHFKRFNDTY 226

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH +GD+V+   + +L       +   R GGEEFA          A  +A  +R  I+  
Sbjct: 227 GHLMGDQVLKLTAKRLSDYCRDGIKAYRYGGEEFALLVPNRPLSGACRVAETIRATIDKL 286

Query: 207 QI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            + +  +G  + +I+IS G+A   H E I  +I RAD  LY AKK GRNRV+
Sbjct: 287 ALKDKRTGKKLDNISISIGVAAFEHGESIRDLISRADTQLYDAKKLGRNRVM 338


>gi|239907124|ref|YP_002953865.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
 gi|239796990|dbj|BAH75979.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
          Length = 420

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 92/184 (50%), Gaps = 10/184 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDID 137
           +  S   EL +S  ++  LS  D L+G+ N   F+ SL    ++ +       ++  DID
Sbjct: 235 VFSSDSTELKMSEEKLDILSSTDQLTGVYNRRKFMESLHGELQRSARFDVSNALLSIDID 294

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK IND +GHPVGD+ + +++  L         +GR+GGEEF   A G  +++ A   N
Sbjct: 295 NFKAINDTYGHPVGDQALIYVAHILKNSLRQVDVLGRVGGEEFGVVAPGVGKEDVAPFLN 354

Query: 198 DLRKIIE-NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            L  I+E N  +  +    I IT+S G         I  ++ +AD ALY +K  G+NR  
Sbjct: 355 RL--IVEFNENLFDTQKEKIKITVSIGCVVFGRNNNIEEVLSKADSALYDSKHKGKNRFS 412

Query: 257 CFSD 260
            + D
Sbjct: 413 IWRD 416


>gi|163759691|ref|ZP_02166776.1| putative GGDEF sensory box protein [Hoeflea phototrophica DFL-43]
 gi|162283288|gb|EDQ33574.1| putative GGDEF sensory box protein [Hoeflea phototrophica DFL-43]
          Length = 356

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 93/186 (50%), Gaps = 8/186 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFK 140
              ++++ +  +   +++  D L+ L N  AF  +L             +++  D+D+FK
Sbjct: 160 AREMEQVKLELDEYKRIANTDPLTRLANRRAFDETLSNLYIDKRAAMYHALIVADVDHFK 219

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           + ND +GHPVGD+V+  ++  +       +F+ R GGEEFA    G+S++    +A  LR
Sbjct: 220 KFNDAYGHPVGDRVLGIVAAVMKSAVRKDVFLARTGGEEFAIILEGTSQEATIGIAERLR 279

Query: 201 KIIENSQI-NISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + IE + + N  +G     IT+S GI           +  +AD ALY AK +GRNR + +
Sbjct: 280 RKIETTPLKNQKTGLDYGPITLSLGICMASEASGAEELYNKADIALYAAKNTGRNRYMVY 339

Query: 259 SDIENN 264
               N 
Sbjct: 340 KPELNE 345


>gi|167032619|ref|YP_001667850.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas putida
           GB-1]
 gi|166859107|gb|ABY97514.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida GB-1]
          Length = 796

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 14/211 (6%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           Y    P  GL ++  E    V      +L  GY++   + +L      +  LS  D L+G
Sbjct: 588 YRVCLPRAGLRWVRGEATPEVGEQ-GCTLWHGYLT--DISDLKGVEEELRALSVTDSLTG 644

Query: 112 LLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           + N   F   L    E+       L+++  DID+FK+IND FGH VGD+V+  L  ++  
Sbjct: 645 IHNRRYFQERLKVELERAQRDGLALAVIMLDIDHFKRINDRFGHAVGDRVLRSLCQRIGQ 704

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                    RLGGEEF     GS  ++A +LA +L + + N  +         +T S G+
Sbjct: 705 RLRRTDVFCRLGGEEFMVLCPGSDAEQARLLALELWQGVRNMPVEGVG----RVTASFGV 760

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A    +E    ++ RAD  +Y AK++GR+RV
Sbjct: 761 AGWRPEEGADALLLRADAGVYAAKQAGRDRV 791


>gi|323961999|gb|EGB57598.1| diguanylate cyclase domain-containing protein [Escherichia coli
           H489]
          Length = 564

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGASLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 542 LADRRLYLAKQAGRNRV-FASD 562


>gi|313499782|gb|ADR61148.1| Diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida BIRD-1]
          Length = 774

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 13/184 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSI 131
           +L  GY++   + +L      +  LS  D L+G+ N   F   L             L++
Sbjct: 592 TLWHGYLT--DISDLKGVEEELRALSVTDSLTGIHNRRYFQERLKIELERAQRDGLPLAV 649

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK+IND FGH VGD+V+  L  ++           RLGGEEF     GS   +
Sbjct: 650 IMLDIDHFKRINDRFGHAVGDRVLRSLCQRIAQRLRRTDVFCRLGGEEFMVLCPGSDADQ 709

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A +LA +L + + N  +         +T S G+A     E    ++ RAD  +Y AK++G
Sbjct: 710 ARLLALELWQGVRNVPVEGVG----QVTASFGVAGWRSGEGADALLLRADAGVYAAKQAG 765

Query: 252 RNRV 255
           R+RV
Sbjct: 766 RDRV 769


>gi|270261967|ref|ZP_06190239.1| diguanylate cyclase [Serratia odorifera 4Rx13]
 gi|270043843|gb|EFA16935.1| diguanylate cyclase [Serratia odorifera 4Rx13]
          Length = 477

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 75/244 (30%), Positives = 124/244 (50%), Gaps = 13/244 (5%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL---VIISITISL 80
           P   +++ ++ FS+F   V+ +  I++ +  L    GL  I V+  +L   V + + ++L
Sbjct: 224 PVPILLWLAMSFSLFTTLVVVL--IYVLWCHLAIDLGLIAINVDMKALQNTVSMRLGVAL 281

Query: 81  L-LGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFF 134
           L LG I+  S+         ++  ++  D L+ +L  +AF+      L    E++ I+  
Sbjct: 282 LALGPIAIASMNFARNALLRQLEHVANHDALTHVLTRNAFMQRGSRLLTQKGEQVCIMML 341

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DIDYFK IND FGH  GD  +   +  +          GR+GGEEFA  AL   +++A  
Sbjct: 342 DIDYFKSINDRFGHSGGDAALISFTRAIAGDLRDSDLFGRMGGEEFAIVALIERQEDAVY 401

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGR 252
           LA  LR+ +E   I + +G  + IT+S G+        + +  ++  AD A+Y AK SGR
Sbjct: 402 LAERLRRRVEIESIAMPAGNHLQITVSIGMVTCIGGTEQNLDNLLKIADMAVYKAKNSGR 461

Query: 253 NRVV 256
           NRV 
Sbjct: 462 NRVA 465


>gi|156742710|ref|YP_001432839.1| diguanylate cyclase [Roseiflexus castenholzii DSM 13941]
 gi|156234038|gb|ABU58821.1| diguanylate cyclase [Roseiflexus castenholzii DSM 13941]
          Length = 380

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 119/245 (48%), Gaps = 16/245 (6%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS--- 86
            + +     IA  +F+ +  +  I L  +  +      +  ++ I +    LLG++    
Sbjct: 132 LYDVRRGALIAASVFLVSFGIVMIQLARWRLIGVDAANSQQVISIYLMAGALLGFLIVLS 191

Query: 87  --GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
              +  + L   Y  +  ++  D L+GL N       L         Y ++  +  FDID
Sbjct: 192 AYRAQAERLRTGYELMIHMAYTDTLTGLPNRRRLYEELCRLIGMADRYGQEFCVCLFDID 251

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FKQ+ND  GH VGD+V+  ++   +         GR GGEEFA     +S  +A +  +
Sbjct: 252 HFKQLNDQHGHLVGDQVLCAIAQTALPHLRAVDHFGRWGGEEFAILLPQTSLSDAQMALD 311

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +R  ++   IN++  P+  IT S G+AE    +   +I++RADQ++Y+AK +GRNR+V 
Sbjct: 312 RVRMALQA--INLADVPT--ITASFGVAEYLPGDTSESILHRADQSMYLAKTTGRNRIVV 367

Query: 258 FSDIE 262
             D+E
Sbjct: 368 DGDVE 372


>gi|120556569|ref|YP_960920.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei
           VT8]
 gi|120326418|gb|ABM20733.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei
           VT8]
          Length = 759

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 13/209 (6%)

Query: 65  LVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL- 122
           +V NLSL  +      L  ++   S +        ++  ++  D L+ L N   F   L 
Sbjct: 552 IVLNLSLSSVLDEQGDLSHFVGVFSDITRQKEIEKQLRIMAHYDALTNLPNRVLFSDRLH 611

Query: 123 ------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                    N +L++V+ D+D FK +ND FGH  GD ++  ++ ++         + RLG
Sbjct: 612 QSMAQARRQNYRLAVVYIDLDQFKPVNDAFGHDAGDGLLVEVARRMRATLREEDSLARLG 671

Query: 177 GEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PI 233
           G+EFAA  +   +     IL + L  +I   +    +  S+ ++ S G       E    
Sbjct: 672 GDEFAAIIVNVPDAVTLDILLSRLLTVIA--EPVWVANHSVEVSASMGYTLYPQGEEIDG 729

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIE 262
             ++ +ADQA+Y AK+ G+NR  CF D +
Sbjct: 730 DQLLRQADQAMYRAKREGKNRYYCFQDAD 758


>gi|330812291|ref|YP_004356753.1| response regulator, PleD/VieA family [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327380399|gb|AEA71749.1| putative response regulator, PleD/VieA family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 707

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 86/190 (45%), Gaps = 10/190 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           ++   +  +   + ++   +  D L+GLLN   F  +                +++ D+D
Sbjct: 257 VTLQDMSVVRHLHQQLEYQAVTDPLTGLLNRRGFYQTAENLLMRSERLESNWVLLYLDLD 316

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK++ND+ GH  GD+V+ ++S+QL         + RLGG+EF A       ++AA +A 
Sbjct: 317 GFKRVNDSLGHDAGDRVLRWVSEQLKACLRPFDILARLGGDEFTALLDLEFPEQAAKIAE 376

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
            L + +   Q     G  + +  S GIA        +  ++  +D A+Y AK++GR +  
Sbjct: 377 KLIERVAICQQ--IEGMDVALGASIGIATYPDCGANLDGLLRASDIAMYEAKRAGRQQYR 434

Query: 257 CFSDIENNTC 266
            +    N   
Sbjct: 435 FYDHEMNGRA 444


>gi|306840916|ref|ZP_07473660.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2]
 gi|306289119|gb|EFM60377.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2]
          Length = 333

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 90/188 (47%), Gaps = 9/188 (4%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVF 133
           L++G I+     I  +   +  R++  +  D L+ L N       ++   S  +   ++ 
Sbjct: 144 LMIGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGKLLTQKKSARDSF-LLL 202

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEA 192
            D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF      G+S+++ 
Sbjct: 203 IDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTSKEQT 262

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK  G+
Sbjct: 263 DIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTKEWRSNKYIFDCADKAMYSAKSKGK 321

Query: 253 NRVVCFSD 260
           NR   F +
Sbjct: 322 NRFEYFEE 329


>gi|227326895|ref|ZP_03830919.1| hypothetical protein PcarcW_06049 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 444

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/179 (34%), Positives = 89/179 (49%), Gaps = 9/179 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136
           Y    +L  LF    ++   S  D L+ LLN           IS     N  LSI   DI
Sbjct: 263 YKINMLLGSLFDEVQKLE--SGKDTLTLLLNRRFLPTILRHEISLAMHSNTSLSIAMIDI 320

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK +ND +GH  GD ++  +++ L        +V R GGEEF    + + +  A  + 
Sbjct: 321 DHFKTVNDTYGHAAGDNILKRIAEILYESTRNSDYVFRYGGEEFMIVLIETPKVAAHTII 380

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             LRK I++  I++ +G S+ +TISAGIA          +I  AD ALY AK +GRNR+
Sbjct: 381 ERLRKKIQDHPIHLQNGESVTMTISAGIAVYSGHPDYECLIKAADDALYQAKANGRNRI 439


>gi|187920506|ref|YP_001889538.1| diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans
           PsJN]
 gi|187718944|gb|ACD20167.1| diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans
           PsJN]
          Length = 777

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 107/227 (47%), Gaps = 14/227 (6%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96
               +V+F A  F    G    + +E ++   + +V I +  S++  +      +  F+ 
Sbjct: 134 FVTGSVLFYATAFALLFGQPLTHDVETVV--WMWIVAIGVPTSVVFHFGFYRFRRNHFLL 191

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPV 150
            ++++QL+  D L+GL N  AF+            + + S +F DID FK +ND FGH +
Sbjct: 192 ESQLAQLAATDPLTGLQNRRAFVKQAERRLDTVTPDTRTSAIFLDIDNFKSLNDRFGHAI 251

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD  +  ++  L+        V R+GGEEFA    G     A  +A  LR  I   +   
Sbjct: 252 GDHALYQVAQVLMEEISADDSVSRIGGEEFALLL-GDGLTGALHVAERLRHAIAAIER-- 308

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              P   +T S G+AE    E I  ++ RAD+AL  AK SGRNRV  
Sbjct: 309 ---PDGRLTASFGVAEHRSGESIMVLLDRADEALLRAKHSGRNRVRA 352


>gi|21109198|gb|AAM37742.1| response regulator [Xanthomonas axonopodis pv. citri str. 306]
          Length = 339

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 92/198 (46%), Gaps = 14/198 (7%)

Query: 71  LVIISITISLLLG--YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE- 127
           +V+ ++  +LLLG        L+ +  +  ++S  + +D L+G+ N  AF   L    + 
Sbjct: 139 IVVAALGCTLLLGVGIWLDLQLRRMHRNEAKLSTEAWVDALTGIANRRAFDHRLSRALQD 198

Query: 128 ------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEF 180
                  LS++  D+D+FK  ND +GH  GD  +  ++  +            R GGEEF
Sbjct: 199 AVRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCSRRSEDLAARYGGEEF 258

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKE---PISTI 236
                 +    A  LA+ +R  +    +   S P S H+T+S G A     E     + I
Sbjct: 259 GMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGAATFEPGEAPLSPNAI 318

Query: 237 IYRADQALYVAKKSGRNR 254
           ++ AD ALY AK+ GRNR
Sbjct: 319 VHDADSALYRAKQKGRNR 336


>gi|56461587|ref|YP_156868.1| intracellular signaling protein [Idiomarina loihiensis L2TR]
 gi|56180597|gb|AAV83319.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Idiomarina
           loihiensis L2TR]
          Length = 453

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 63/208 (30%), Positives = 102/208 (49%), Gaps = 21/208 (10%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           LTPF  L+   +E +SL+  +I   +    I+ S  K       R+ +L+  D L+GL N
Sbjct: 255 LTPFTELD---IELMSLICSAIETII----INSSKTK-------RLEKLAYTDFLTGLSN 300

Query: 115 HSAFISSLGSY---NEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
                         + K +        D+D+FK++NDN+GH  GD+V+   + ++  +  
Sbjct: 301 RLFITERFEELEPNDNKFANVTCFAIIDVDHFKKVNDNYGHDAGDEVLQQTARKIAGLVR 360

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
               V R+GGEEFA        ++A  +   +R  IE + I I    SI +T+S G  E 
Sbjct: 361 ISDCVSRVGGEEFALLLTDLPREKAERVLEKVRTAIEGNAITIDKNQSIKVTVSIGATEL 420

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRV 255
             ++  ++   +AD ALY +K+ GRNRV
Sbjct: 421 KAEDEFNSAYKKADLALYKSKRDGRNRV 448


>gi|318077437|ref|ZP_07984769.1| integral membrane phosphodiesterase [Streptomyces sp. SA3_actF]
          Length = 1149

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 89/199 (44%), Gaps = 17/199 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           ++   + E      ++   +  D L+ L N + F   +          +  ++++F D+D
Sbjct: 323 LNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTRRVRRALKGRRTGDTGVAVLFIDLD 382

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND+ GH  GD+++   + +L     +     RLGG+EFAA  +G   ++ A    
Sbjct: 383 GFKGVNDSIGHQAGDELLVQAARRLHESVRSGDTAARLGGDEFAALIVGDGSRDVAAREQ 442

Query: 198 DLRKIIENSQINIS-----SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            ++ + E  ++ +S      G  + I  S G+A   +      ++  AD A+Y AK  G+
Sbjct: 443 QIKDLAERLRVALSLPYTIEGQEVRIAASIGVAFAENGLGAGELLRNADLAMYRAKGLGK 502

Query: 253 NRVVCF-----SDIENNTC 266
           +RV  +     ++    T 
Sbjct: 503 DRVELYVPQLQTEAARRTA 521


>gi|296156788|ref|ZP_06839626.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. Ch1-1]
 gi|295893387|gb|EFG73167.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. Ch1-1]
          Length = 667

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 94/187 (50%), Gaps = 11/187 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYF 139
           SG+ + E  ++  R+++L+  D L+GL N +A    + +        E + ++F D+D F
Sbjct: 220 SGTDITEERLAQERLTELANTDSLTGLANRNAIQDRIRAAIEDAAPGEAVGVLFLDLDNF 279

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND++GH  GD++I  +S  + +       + RLGG+EF   A   +  E  + A  +
Sbjct: 280 KKVNDHYGHVFGDRLIRDVSAAISLCLNEGDTLARLGGDEFIVLAAKGTAHELEVTAQRI 339

Query: 200 RKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +E  +   S G   ++   S GIA    H + + ++I  AD A+YVAK  G+     
Sbjct: 340 ---LERMRTPFSLGLVEVYTGCSIGIALYPEHGDSLESLIRSADTAMYVAKDEGKRTHRV 396

Query: 258 FSDIENN 264
           FS   N 
Sbjct: 397 FSPEMNR 403


>gi|283785725|ref|YP_003365590.1| cellulose synthesis regulatory protein (signal transduction
           protein) [Citrobacter rodentium ICC168]
 gi|282949179|emb|CBG88787.1| cellulose synthesis regulatory protein (signal transduction
           protein) [Citrobacter rodentium ICC168]
          Length = 564

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 91/199 (45%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLGYISGS-ILKELFISYNRISQLSRIDCLSGLLNH-------SAFIS 120
           L ++    T  L++ ++    ++  +F   + +   +  D L+ L N             
Sbjct: 362 LVMLWTLFTAMLIISWVVIRHMVSNMFEMQSSLQWQAWHDTLTRLYNRGALFGKARHLAQ 421

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              +  +  S++  D+D+FK IND FGH  GD+V+   +  +          GR+GGEEF
Sbjct: 422 RCQAQKQPFSVIQIDLDHFKSINDRFGHQAGDRVLTHAASLISGTLRADDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIY 238
                 ++  +A  +A  +R+ +   ++ ++   ++ I+ S G++     +      +  
Sbjct: 482 CVVLPATTLAQAEAIAERIRQRLNEKELLVAKSTTLRISASLGVSSAQENDDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK+ GRNRV  
Sbjct: 542 LADRRLYLAKQMGRNRVCI 560


>gi|255616822|ref|XP_002539786.1| conserved hypothetical protein [Ricinus communis]
 gi|223502391|gb|EEF22597.1| conserved hypothetical protein [Ricinus communis]
          Length = 204

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 15/195 (7%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYN 126
           +S  +   LG++   ++KE   S   I  L+  D L+ + N  AF+       ++     
Sbjct: 1   MSFALMGSLGFVL--MIKER--SDREIRTLAMTDPLTKIFNRRAFMIQAEKELAAAERSG 56

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             L+ +  DID+FKQIND +GH  GD+V+  + + L         +GR GGEEF A   G
Sbjct: 57  LPLAFLMLDIDHFKQINDKYGHAAGDEVLVRIVEVLSSHLRKQDTLGRYGGEEFCALLPG 116

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH---KEPISTIIYRADQA 243
           +  Q A  LA  LR  +  ++I +    S+ +T+S G +   H    +    ++  AD+A
Sbjct: 117 TDAQGAMALAEKLRLEVAMTRIEVEEN-SLGLTLSIGGSTWEHLGPTKDYRELMEEADRA 175

Query: 244 LYVAKKSGRNRVVCF 258
           LY AK  GRNR + +
Sbjct: 176 LYQAKTGGRNRSLLY 190


>gi|189405270|ref|ZP_03007744.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC869]
 gi|189371044|gb|EDU89460.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC869]
          Length = 558

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 536 LADRRLYLAKQAGRNRV-FASD 556


>gi|300818624|ref|ZP_07098832.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
 gi|300528796|gb|EFK49858.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
          Length = 558

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 536 LADRRLYLAKQAGRNRV-FASD 556


>gi|294666653|ref|ZP_06731890.1| response regulator [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292603559|gb|EFF46973.1| response regulator [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 515

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 92/198 (46%), Gaps = 14/198 (7%)

Query: 71  LVIISITISLLLG--YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE- 127
           +V+ ++  +LLLG        L+ +  +  ++S  + +D L+G+ N  AF   L    + 
Sbjct: 315 IVVAALGCTLLLGVGIWLDLQLRRMHRNEAKLSTEAWVDALTGIANRRAFDHRLSRALQD 374

Query: 128 ------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEF 180
                  LS++  D+D+FK  ND +GH  GD  +  ++  +            R GGEEF
Sbjct: 375 AVRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCSRRSEDLAARYGGEEF 434

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKE---PISTI 236
                 +    A  LA+ +R  +    +   S P S H+T+S G A     E     + I
Sbjct: 435 GMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGAATFEPGEAPLSPNAI 494

Query: 237 IYRADQALYVAKKSGRNR 254
           ++ AD ALY AK+ GRNR
Sbjct: 495 VHDADSALYRAKQKGRNR 512


>gi|171316354|ref|ZP_02905574.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
 gi|171098483|gb|EDT43285.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
          Length = 452

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 67/259 (25%), Positives = 118/259 (45%), Gaps = 13/259 (5%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           L +W+ +   L +    +  +  ++   + IA +  + +  L  +  T  + + + L   
Sbjct: 196 LVVWMLNALALVAVL-VSGRLRTTLDLWLAIAVLACLTDTTLNLLS-THRFTIGWYLARV 253

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------S 121
            S+    I + +L   ++  + + LF ++  + + S  D L+G  N S F          
Sbjct: 254 FSMFTPGILVCVLAWEVT-MLYQRLFEAHTILIRSSARDGLTGAFNRSHFNDHFHTLFLQ 312

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEF 180
                E LS++  D+D+FK  ND FGH  GD  +  +++ L      P   V R GGEEF
Sbjct: 313 ARRQGEPLSLLMVDVDHFKAYNDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEF 372

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIY 238
           A     +  + A ++A + R+ +    + + S P+  +++S G A     E      +I 
Sbjct: 373 AIVLPNTGARGARLVAEEAREAVLRLDLAMPSSPAGRVSVSVGCATVSADELSTPDALIE 432

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD ALY AK +GRNRVV 
Sbjct: 433 AADAALYRAKDAGRNRVVV 451


>gi|332760662|gb|EGJ90950.1| diguanylate cyclase domain protein [Shigella flexneri 4343-70]
          Length = 320

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   L+ G++S     +L  
Sbjct: 91  LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVVYPLMFGWVSYQTATKLAE 150

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 151 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 210

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      +R+ +   ++
Sbjct: 211 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVREGLNTLRL 270

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 271 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 318


>gi|325925833|ref|ZP_08187203.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
 gi|325543768|gb|EGD15181.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
          Length = 955

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 8/176 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           +L  L I  +   + +  D L+GL N   F  +L             L +   DID+FK+
Sbjct: 780 LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSGRTLVLAILDIDHFKR 839

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND++ H  GD V+  +   L           RLGGEEFA     ++  EA  L   +R 
Sbjct: 840 INDHYSHASGDAVLHEVGVLLTAAARASDLPARLGGEEFALLLADTTLDEAQALCLRIRA 899

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  +++ N +S   + +T SAG+A     +  S+++ RAD ALY AK +GR+R+  
Sbjct: 900 LF-HARHNWASVEGLQVTFSAGVAALRDDDTGSSLMQRADHALYEAKSAGRDRICV 954


>gi|294338710|emb|CAZ87042.1| hypothetical protein; putative membrane protein; putative GGDEF and
           PAS/PAC domains [Thiomonas sp. 3As]
          Length = 530

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 7/172 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-----SIVFFDIDYFKQIND 144
           + +       ++++++ D L+GL N   F     +  +       S++  D D+FK++ND
Sbjct: 352 ITDRKQREQALTRMTQTDALTGLYNRRGFFERANALLQSARDQAPSLLLIDADHFKRVND 411

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD V+  L++++         +GR+GGEEFA     +S + A  LA+ +R  + 
Sbjct: 412 AHGHAVGDTVLVQLANRMNAALREGDVIGRIGGEEFAVFLPATSLENAYELADRIRLSVS 471

Query: 205 NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
              + I  G  + +T+S G+      E  +   + RAD A+Y AK++GRNRV
Sbjct: 472 RHALRI-QGLRVPMTLSIGVTVLQLGESTLEAALGRADTAMYQAKQNGRNRV 522


>gi|293405438|ref|ZP_06649430.1| cellulose synthesis regulatory protein [Escherichia coli FVEC1412]
 gi|298381082|ref|ZP_06990681.1| cellulose synthesis regulatory protein [Escherichia coli FVEC1302]
 gi|291427646|gb|EFF00673.1| cellulose synthesis regulatory protein [Escherichia coli FVEC1412]
 gi|298278524|gb|EFI20038.1| cellulose synthesis regulatory protein [Escherichia coli FVEC1302]
          Length = 569

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 367 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 426

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 427 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 486

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 487 CVILPGASLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 546

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 547 LADRRLYLAKQAGRNRV-FASD 567


>gi|163741588|ref|ZP_02148979.1| diguanylate cyclase, putative [Phaeobacter gallaeciensis 2.10]
 gi|161385322|gb|EDQ09700.1| diguanylate cyclase, putative [Phaeobacter gallaeciensis 2.10]
          Length = 598

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 78/175 (44%), Gaps = 8/175 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
            +++   S  D L+GL N      +L             LSI+  D+D+FK+ NDN GH 
Sbjct: 400 RDQLHDQSVRDPLTGLFNRRHMTETLRKSIGNSQNSGTPLSIIAVDVDHFKKFNDNHGHD 459

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  +   L           R GGEEF     G+S+++    A  LR+ +E   + 
Sbjct: 460 AGDMVLRAVGSVLEQACDGDEVACRPGGEEFTLILPGASQEDVMTKAELLRQAVEAIVVR 519

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                   I+IS G+A    H      ++  +D+ALY AK  GRN+V   S  E 
Sbjct: 520 YGEKALPGISISLGVAHYPRHGTMPQDLLRASDEALYEAKAKGRNQVCVASSAEQ 574


>gi|167031719|ref|YP_001666950.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Pseudomonas putida GB-1]
 gi|166858207|gb|ABY96614.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Pseudomonas putida GB-1]
          Length = 1276

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 15/192 (7%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            + + E   S  RI +L+  D L+ L N + F   L             + ++F D+D FK
Sbjct: 825  TDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAERQKAWVVLMFLDLDRFK 884

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAIL 195
             IND+ GH  GD+++  ++ +L+        V R+GG+EF         +E     A  +
Sbjct: 885  PINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQPRPTREMALNRAIHV 944

Query: 196  ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
            A ++   +   +  +       +T S GIA        +S ++  AD A+Y AK+ G+N 
Sbjct: 945  AENILGSL--VRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKNN 1002

Query: 255  VVCFSDIENNTC 266
               +    N + 
Sbjct: 1003 FQFYQAEMNASA 1014


>gi|119897735|ref|YP_932948.1| response regulator [Azoarcus sp. BH72]
 gi|119670148|emb|CAL94061.1| probable response regulator [Azoarcus sp. BH72]
          Length = 656

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 9/173 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL I+  R+ + +  D L+G  N    I  +             LS +  D+D FKQIND
Sbjct: 474 ELAITNRRLQEAALTDALTGFPNRRYAIDRMQQEWTAAKRNGRPLSCMIIDLDGFKQIND 533

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGD V+   +D L +       + R GG+EF      +   +    A  LR  ++
Sbjct: 534 TYGHDVGDMVLRQSADALRLALRGQDVICRTGGDEFLVICPDTDLAQGLSCAERLRAAVD 593

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
              I ++   ++ +TIS G+A R      +  ++ RADQ  Y+AK+ GRN V 
Sbjct: 594 ALAI-VTGADTLGLTISIGVAVRDDSMADLDALMKRADQGAYLAKQRGRNCVA 645


>gi|77748595|ref|NP_641902.2| hypothetical protein XAC1570 [Xanthomonas axonopodis pv. citri str.
            306]
          Length = 1013

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 8/176 (4%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
            +L  L I  +   + +  D L+GL N   F  +L             L +   DID+FK+
Sbjct: 838  LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSARPLVLAILDIDHFKR 897

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            IND++ H  GD V+  +   L           RLGGEEFA     ++  EA  L   +R 
Sbjct: 898  INDHYSHASGDAVLHEVGVLLTAAARASDLPARLGGEEFALLLADTTLDEAQALCLRIRA 957

Query: 202  IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +  +++ N  S   + +T SAG+A    ++  S+++ RAD ALY AK +GR+R+  
Sbjct: 958  LF-HARHNWGSVEGLQVTFSAGVAALRDEDTGSSLMQRADHALYEAKSAGRDRICV 1012


>gi|26991637|ref|NP_747062.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida KT2440]
 gi|24986731|gb|AAN70526.1|AE016694_9 sensory box protein/response regulator [Pseudomonas putida KT2440]
          Length = 708

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 51/210 (24%), Positives = 100/210 (47%), Gaps = 16/210 (7%)

Query: 71  LVIISITISLLLGYISGSILKELFIS-----YNRISQLSRIDCLSGLLNHSAFISSLG-- 123
           LV ++++ + L       ++  L +S     + ++   +  D L+GLLN   F  +    
Sbjct: 240 LVPVALSCAPLPADQQAMVVTVLDMSAVRNLHQQLEYQAITDPLTGLLNRRGFYQAAEGA 299

Query: 124 -----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                  ++  ++++ D+D FK+IND+ GH  GD+V+ ++++QL    G+   + R+GG+
Sbjct: 300 LLRNERSDKAQALMYMDLDGFKRINDSLGHDAGDRVLRWVAEQLKDCLGSEALLARMGGD 359

Query: 179 EFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTI 236
           EF A        ++A   A  L + +  S  +   G  + + +S GIA        +  +
Sbjct: 360 EFTALFDSLPYPEQAGRFAERLLERVSIS--HEVDGLDVCLGVSIGIATYPDCGANVEGL 417

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           +  AD A+Y AK++GR +   +    N   
Sbjct: 418 LRSADAAMYAAKQAGRQQYRFYDQELNGRA 447


>gi|94984904|ref|YP_604268.1| diguanylate cyclase [Deinococcus geothermalis DSM 11300]
 gi|94555185|gb|ABF45099.1| diguanylate cyclase [Deinococcus geothermalis DSM 11300]
          Length = 385

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 10/163 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           + + +R D L+GL N       +              ++  D+D+FK IND  GHP GD 
Sbjct: 211 LERQARTDPLTGLPNRRVLYQEIEQLLLDLGRGSPGGVILLDLDHFKAINDTHGHPTGDD 270

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+      L +   +   +GR GGEEF      +  +   ++A  LR  ++N+   ++  
Sbjct: 271 VLVQTGQLLRLDLRSEDILGRWGGEEFMVVLPATPAEGIGLVAERLRARLQNTPHPVAG- 329

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               +T S G+A     +    +  RAD ALY AK+ GRNRVV
Sbjct: 330 ---IVTASFGVAAARPGDTFGELTTRADGALYRAKQGGRNRVV 369


>gi|134297395|ref|YP_001121130.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
 gi|134140552|gb|ABO56295.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
          Length = 452

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 64/260 (24%), Positives = 116/260 (44%), Gaps = 15/260 (5%)

Query: 9   LSIWLCHEKNLES-FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE 67
           L++W+ +   L +  +         ++ +I    ++         +  T  + + + L  
Sbjct: 196 LAVWIANALALVTVLAAGRLRTTLDLWLAI---AMLACVTDTTLNLLTTHRFTVGWYLAR 252

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------- 120
             S+    + + +L   ++  + ++LF ++  + + S  D L+G  N S F         
Sbjct: 253 VFSMFTPGVLVCVLAWEVT-KLYQQLFEAHTTLVRSSARDGLTGAFNRSHFNDHFHTLFL 311

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEE 179
                +E LS++  D+D+FK  ND FGH  GD  +  ++  L      P   V R GGEE
Sbjct: 312 QARRQSEPLSLLMVDVDHFKAYNDAFGHVKGDACLIAVAQALAGAVRRPADIVARYGGEE 371

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTII 237
           FA     +  + A I+A++ R+ +    + + S P+  +++S G A     E      +I
Sbjct: 372 FAIVLPNTGARGARIVADEAREAVLRLDLPMPSSPTGRVSVSIGCATVSADELSTPDALI 431

Query: 238 YRADQALYVAKKSGRNRVVC 257
             AD ALY AK +GRN VV 
Sbjct: 432 EAADGALYRAKDAGRNCVVM 451


>gi|110800454|ref|YP_696245.1| GGDEF/HD domain-containing protein [Clostridium perfringens ATCC
           13124]
 gi|110675101|gb|ABG84088.1| GGDEF/HD domain protein [Clostridium perfringens ATCC 13124]
          Length = 563

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 102/227 (44%), Gaps = 11/227 (4%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI 100
            V  +++  +  I L      +  +     L++  + +  L  +  G  +K        +
Sbjct: 132 VVSVVSSAIILAIDLIFSGNADVNIYFQNDLILAGVFV--LTAWTLGFYVKTENDHIKEL 189

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
             L   D L+G+ NH  F   L          NEKLS++F DIDYFK  ND +GH  GD+
Sbjct: 190 QTLVNEDGLTGVYNHRYFYDKLREKMHISEVENEKLSLIFMDIDYFKHYNDLYGHQKGDE 249

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISS 212
            +  +   L  +      V R GGEEFA     +SE+EA  +A  +R  +E +      +
Sbjct: 250 ALKKIGKLLKNIARENDLVARYGGEEFAIILPNTSEEEATKIAERIRNKVEKTYFEGQEN 309

Query: 213 GPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCF 258
            P+ + T+S GIA    K      ++  AD ALY AK   +NRV  +
Sbjct: 310 QPNANFTVSVGIAVFPDKAKSELELVKCADDALYRAKFFHKNRVETY 356


>gi|81299967|ref|YP_400175.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Synechococcus elongatus PCC 7942]
 gi|81168848|gb|ABB57188.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Synechococcus elongatus PCC 7942]
          Length = 1047

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 12/214 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           YI  E L+  I+     ++    +   + +     N++   +  D L+GL N +  I  L
Sbjct: 578 YIWFETLTKPIMDDQGVVIGLQTTSRDVTQRIEIQNQLQYDACHDSLTGLANRNLLIERL 637

Query: 123 GS--------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
                      N K +++F D+D FK IND+ GH  GD+++  ++ +L  +  +     R
Sbjct: 638 ELSLKRSKRLQNYKYAVLFLDLDRFKVINDSLGHITGDQLLVSIAQKLQSIIRSHDLAAR 697

Query: 175 LGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EP 232
           LGG+EF        +  E   +A  +   I+   + +    SI+ + S GI    H+ E 
Sbjct: 698 LGGDEFVVLVEDIQTFDEPIKVAERILAAIQ-VPLELEE-RSIYTSTSIGIVFGSHEYES 755

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            + ++  AD A+Y AK  GR R   F    ++  
Sbjct: 756 ATQLLRDADTAMYRAKSRGRARYEVFDSAMHSQA 789


>gi|241766460|ref|ZP_04764331.1| diguanylate cyclase/phosphodiesterase [Acidovorax delafieldii 2AN]
 gi|241363333|gb|EER58859.1| diguanylate cyclase/phosphodiesterase [Acidovorax delafieldii 2AN]
          Length = 632

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/209 (25%), Positives = 98/209 (46%), Gaps = 11/209 (5%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
           V  +S ++I++ +  L   +       +  + NR+  L+  D ++G  N  AF   L + 
Sbjct: 171 VRFVSALLIALAVMALATAMVLRSRAAVRNAENRLHALAHTDAVTGTGNRHAFNERLAAE 230

Query: 126 -------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                    +L++++ D+D FK +ND FGH  GD ++  ++ +L         + RLGG+
Sbjct: 231 ILRASNLGSRLALIYIDLDNFKTLNDTFGHAAGDGLLRQVAVRLRSAVRAGDSISRLGGD 290

Query: 179 EFAAAA-LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTI 236
           EFA    L  +++        +  I +++   +  G  + +T SAGIA          ++
Sbjct: 291 EFAVILRLDMNDETLTRYGQRIVDIFQSTYTEV--GQQVSVTCSAGIATFPDDASDRDSL 348

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENNT 265
           +  AD A+Y AK+ G+NR V F    N  
Sbjct: 349 VSNADTAMYRAKEMGKNRCVRFDASMNQA 377


>gi|168177676|ref|ZP_02612340.1| GGDEF/HD domain protein [Clostridium botulinum NCTC 2916]
 gi|182670681|gb|EDT82655.1| GGDEF/HD domain protein [Clostridium botulinum NCTC 2916]
          Length = 567

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 79/273 (28%), Positives = 126/273 (46%), Gaps = 36/273 (13%)

Query: 28  MIYFSIFFSIFIATVIFIAN---IFLFYIGLTPFY-GLEY-ILVENLSLVIISIT----- 77
           ++   +FF + + T  + +    +FLF I +T    G++Y I++  L+  II I      
Sbjct: 91  IVLILLFFVVVLGTGTYASQYKFLFLFMIIITTIQSGMKYGIIIACLASFIILIMDIVCA 150

Query: 78  -----------------ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
                            + +L  +  G  +K       ++  L   D L+ + NH  F  
Sbjct: 151 PNLVVNEYFEQDLILAGVFILTAWPLGFYVKVENEHIEKLESLVNKDGLTDVYNHRFFHD 210

Query: 121 SL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           +L          NE LS++F DIDYFK  ND +GH  GD+V+  + + L         V 
Sbjct: 211 ALSKEVIECEEKNEALSMIFIDIDYFKHYNDLYGHQKGDQVLKTIGEILKNNTRKEDIVA 270

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERCHKEP 232
           R GGEEFA     +SEQ+A  +A  +RK IE +      + P+ ++T+S GI+   +K  
Sbjct: 271 RYGGEEFAVLLPNTSEQDAINIAEKIRKKIEYTYFEGEENQPNGNLTVSMGISVYPYKAK 330

Query: 233 IS-TIIYRADQALYVAKKSGRNRVVCFSDIENN 264
               +I  AD ALY AK   +NRV  ++ I + 
Sbjct: 331 SDMELIKSADDALYRAKFFNKNRVEAYTSILDE 363


>gi|170738234|ref|YP_001779494.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia cenocepacia
           MC0-3]
 gi|169820422|gb|ACA95004.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia cenocepacia
           MC0-3]
          Length = 516

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 9/185 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFF 134
             I    +     +   I  L+R D L+GL N     + L     +         +I++ 
Sbjct: 321 AVIIVEDVTTRRQTEQHIRHLARHDSLTGLPNRHELHAELKRMLARRPRLPSPAFAIMYL 380

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND FGH  GD+V+  ++++L           R+GG+EF  A   ++ Q  +I
Sbjct: 381 DLDGFKSINDRFGHQAGDEVLTQVAERLGKTLPPGELAARIGGDEFIVAIDDTTMQACSI 440

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           LA  + + I ++   +S G ++ I IS GIA          +I +AD ALY AK +G+  
Sbjct: 441 LAARIIRQI-SAPYALSIGETVCIGISIGIALDDGHGSPDELIRQADSALYDAKSAGKGI 499

Query: 255 VVCFS 259
              +S
Sbjct: 500 YCFYS 504


>gi|78046954|ref|YP_363129.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78035384|emb|CAJ23029.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 569

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 8/173 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNF 146
                 + + S  D L+GL N      SL             LS++  D+D+FKQ ND+ 
Sbjct: 389 LRLRESLRRQSIRDALTGLYNRRYLEESLSHELARCARRGLPLSVLMLDVDHFKQFNDSQ 448

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD ++A + + L+          R GGEEF      +  +EA  +A  +R  I   
Sbjct: 449 GHAGGDLLLAAVGELLLTRLRAEDVACRYGGEEFTVLLPEADGEEAMRVAEQIRSYIAAL 508

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            ++  +     +T S G+A      E  +++I +AD ALY AK +GRNRV  +
Sbjct: 509 AVSDGARALPKVTASIGVASFPADGEQGASLIQKADAALYRAKHAGRNRVERY 561


>gi|153831070|ref|ZP_01983737.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|148873451|gb|EDL71586.1| GGDEF family protein [Vibrio cholerae 623-39]
          Length = 372

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 8/176 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L+    ++  LS  D L+GL N    +  L           +    V  DID FK +N
Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH VGDKV+  +++ L   F +   V RLGG+EF      +       +A+ + + I
Sbjct: 253 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETDTAGGVYIADQVCRAI 312

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   I++ +      ++S G+A      +    ++  ADQA+Y+AK SG+NRV  F
Sbjct: 313 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHELLRAADQAVYLAKNSGKNRVCAF 368


>gi|323168923|gb|EFZ54603.1| cellulose synthesis regulatory protein [Shigella sonnei 53G]
          Length = 558

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFERLQS 535

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 536 LADRRLYLAKQAGRNRVCA 554


>gi|320328942|gb|EFW84941.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 960

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 11/194 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI----- 131
           T ++LL        +EL  +  R+   +  D L+GL N S     L    +   +     
Sbjct: 507 TANVLLEARVRDRTRELDQANARLQHENSHDSLTGLPNRSHLQHRLKQAWQDFCLNGQQL 566

Query: 132 --VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
             +F D+D FK IND+ GH  GD ++   +++L         + RLGG+EFA  ++ +  
Sbjct: 567 IVMFIDLDRFKMINDSLGHHCGDMLLVQAAERLRSCMREEDLLARLGGDEFAVLSIDAPL 626

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
           Q    +A  +    E  Q  +    S+  + S G+  A+    +  + ++  AD A+Y  
Sbjct: 627 QAGTDIAQRILTAFE--QPFVIDDHSVFSSCSIGVVGADSRFHQEPADLLRDADTAMYRV 684

Query: 248 KKSGRNRVVCFSDI 261
           K  GR+    F+  
Sbjct: 685 KNGGRDSFAVFNQA 698


>gi|298507384|gb|ADI86107.1| sensor histidine kinase response receiver diguanylate cyclase
           [Geobacter sulfurreducens KN400]
          Length = 585

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 78/174 (44%), Gaps = 9/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L  +Y   +  +  D L+GL N   F       +     Y    S+   DID+FKQ ND 
Sbjct: 405 LKRNYEIAASEAFTDPLTGLFNLRQFWLSLDHELKRARRYRRNCSLAMIDIDWFKQYNDC 464

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD+V+   +        T     R GGEEF      ++ + A + A  LR+ +E 
Sbjct: 465 HGHLRGDEVLREAAAVFRGCIRTSDIAARYGGEEFVVIMPETTRELALLAAEKLRRAVEE 524

Query: 206 SQINISS-GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
               +    P   +T+S GIA      E    ++  AD+ALY AK+ GRNRVV 
Sbjct: 525 HLFPLRETQPGGALTVSIGIATFPDDAEDGRELVEAADRALYRAKEGGRNRVVA 578


>gi|94265544|ref|ZP_01289291.1| GGDEF:GAF [delta proteobacterium MLMS-1]
 gi|93453944|gb|EAT04294.1| GGDEF:GAF [delta proteobacterium MLMS-1]
          Length = 488

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 8/173 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQIND 144
           E    + R+ + +  D L+GL N      S            + ++++  D+D+FK++ND
Sbjct: 185 ERAQLFERVRREAMHDELTGLYNRRYLQDSGRRELHKAERARQPVALLLLDLDHFKEVND 244

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+  L+  L           R GGEEF      ++  EA  LA+ LR+++E
Sbjct: 245 YWGHLRGDRVLRELAGLLRCNLRQSDVPARYGGEEFVVLLPDTASGEAGQLADKLRRLVE 304

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
              +         +T + G+A        +  ++  AD+ LY  K +GRN+VV
Sbjct: 305 EQLVLEEGEERRLVTATIGVAAYPADGNNLEELLAVADRRLYAGKTAGRNQVV 357


>gi|318061959|ref|ZP_07980680.1| integral membrane phosphodiesterase [Streptomyces sp. SA3_actG]
          Length = 1296

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 89/199 (44%), Gaps = 17/199 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           ++   + E      ++   +  D L+ L N + F   +          +  ++++F D+D
Sbjct: 470 LNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTRRVRRALKGRRTGDTGVAVLFIDLD 529

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND+ GH  GD+++   + +L     +     RLGG+EFAA  +G   ++ A    
Sbjct: 530 GFKGVNDSIGHQAGDELLVQAARRLHESVRSGDTAARLGGDEFAALIVGDGSRDVAAREQ 589

Query: 198 DLRKIIENSQINIS-----SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            ++ + E  ++ +S      G  + I  S G+A   +      ++  AD A+Y AK  G+
Sbjct: 590 QIKDLAERLRVALSLPYTIEGQEVRIAASIGVAFAENGLGAGELLRNADLAMYRAKGLGK 649

Query: 253 NRVVCF-----SDIENNTC 266
           +RV  +     ++    T 
Sbjct: 650 DRVELYVPQLQTEAARRTA 668


>gi|311694996|gb|ADP97869.1| response regulator receiver domain protein (CheY-) [marine
           bacterium HP15]
          Length = 613

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 85/173 (49%), Gaps = 8/173 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQI 142
           ++EL  +  ++S LS  D L+GL N            +     ++ L++   D D+FK I
Sbjct: 431 MRELEKANRKLSTLSLNDALTGLYNRRHLNNIFPELCAEARRTSQPLTLALVDADHFKNI 490

Query: 143 NDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD  + F+++ L   V        R GGEEFA    G+    A  + + L +
Sbjct: 491 NDTWGHGFGDSCLQFIAEMLTRHVKRPRDVAIRFGGEEFALLLPGTDANGALNVCSALLQ 550

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            I  + +    G  + IT+SAGIA     E  + +  RAD+ALY AK  GRNR
Sbjct: 551 DIARTPLLSPDGNKVKITLSAGIASLVSGETQNQLFERADEALYRAKSRGRNR 603


>gi|297538153|ref|YP_003673922.1| diguanylate cyclase [Methylotenera sp. 301]
 gi|297257500|gb|ADI29345.1| diguanylate cyclase [Methylotenera sp. 301]
          Length = 639

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 90/185 (48%), Gaps = 8/185 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDID 137
           ++   +++L    +++S+   ID L+G+LN                     L +   DID
Sbjct: 447 VAQQKIQQLQAELSQLSEKVSIDQLTGVLNRRGLDEAMLREISRAQRGASSLCVALLDID 506

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK  NDN+GH VGD  +  L+  +           R GGEEF      ++   A    +
Sbjct: 507 NFKHFNDNYGHNVGDTALQHLAKVIQETLRPTDIAARFGGEEFVILLPDTTIDAAVETIS 566

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            L++ +   Q  + +   + IT SAGIA     E  +TI+ RADQA+Y+AKKSG+NRV+ 
Sbjct: 567 RLQRAL-TKQFFLGNNERLLITFSAGIALFRETEEQATILNRADQAMYLAKKSGKNRVMT 625

Query: 258 FSDIE 262
             D+E
Sbjct: 626 EVDLE 630


>gi|293410312|ref|ZP_06653888.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470780|gb|EFF13264.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 569

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 367 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 426

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 427 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 486

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 487 CVILPGASLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 546

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 547 LADRRLYLAKQAGRNRV-FASD 567


>gi|89898937|ref|YP_521408.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
 gi|89343674|gb|ABD67877.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
          Length = 398

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 90/189 (47%), Gaps = 16/189 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L  +  R++Q + +D L+GL N   F  +L             LS++  DID+FK  NDN
Sbjct: 201 LEANNQRLAQQTAMDGLTGLANRRRFDEALTVEWQRAARGRTPLSLLMVDIDHFKNYNDN 260

Query: 146 FGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD+ +  +S  L          V R GGEEF     G+    A  +A     +++
Sbjct: 261 YGHLAGDQCLRRVSSVLSRCVRRAGELVARYGGEEFVLLLPGADMAHACEIAQMCLDLMQ 320

Query: 205 NSQINISSGP-SIHITISAGIAERCHK---EPISTIIYRADQALYVAKKSGRNRVVCFS- 259
              +  ++ P S+++T+S G+A        +  ++++  AD A+Y AK SGR        
Sbjct: 321 QECVAHAASPTSVYVTLSIGVACALPDAMLDDPASLVNAADAAMYRAKSSGRAHYEVADQ 380

Query: 260 ---DIENNT 265
              +I++NT
Sbjct: 381 ADWEIDDNT 389


>gi|39998439|ref|NP_954390.1| sensor histidine kinase/GGDEF domain protein [Geobacter
           sulfurreducens PCA]
 gi|39985386|gb|AAR36740.1| sensor histidine kinase/GGDEF domain protein [Geobacter
           sulfurreducens PCA]
          Length = 565

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 78/174 (44%), Gaps = 9/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L  +Y   +  +  D L+GL N   F       +     Y    S+   DID+FKQ ND 
Sbjct: 385 LKRNYEIAASEAFTDPLTGLFNLRQFWLSLDHELKRARRYRRNCSLAMIDIDWFKQYNDC 444

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD+V+   +        T     R GGEEF      ++ + A + A  LR+ +E 
Sbjct: 445 HGHLRGDEVLREAAAVFRGCIRTSDIAARYGGEEFVVIMPETTRELALLAAEKLRRAVEE 504

Query: 206 SQINISS-GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
               +    P   +T+S GIA      E    ++  AD+ALY AK+ GRNRVV 
Sbjct: 505 HLFPLRETQPGGALTVSIGIATFPDDAEDGRELVEAADRALYRAKEGGRNRVVA 558


>gi|222033694|emb|CAP76435.1| Cellulose synthesis regulatory protein [Escherichia coli LF82]
          Length = 564

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LLL  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTSMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G++  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 542 LADRRLYLAKQAGRNRV-FASD 562


>gi|213969573|ref|ZP_03397709.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
 gi|301383348|ref|ZP_07231766.1| GGDEF domain protein [Pseudomonas syringae pv. tomato Max13]
 gi|302059380|ref|ZP_07250921.1| GGDEF domain protein [Pseudomonas syringae pv. tomato K40]
 gi|302134509|ref|ZP_07260499.1| GGDEF domain protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213925669|gb|EEB59228.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
          Length = 358

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 115/225 (51%), Gaps = 10/225 (4%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
              + +    L P   L+  +++  + + + +   + +G+++  +  +L+   N +  LS
Sbjct: 125 ALGVLISLAVLNPVVNLDGNMMQIYACLPVLVIYPIFIGWMNHQVTLKLWEHRNILRTLS 184

Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           R D L+GLLNH A+   L        + +++  I   DID+FK IND +GH +GD V+  
Sbjct: 185 RTDSLTGLLNHGAWKDLLDLEFAKSQNQHQECVIALIDIDHFKIINDTYGHLMGDTVLQN 244

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +S+ L+        +GR GG+EF      +S  +A  +   +R  I+  ++  S    + 
Sbjct: 245 ISEALIENLRDSDLIGRCGGDEFCVILPNTSLLQAREILERMRLAID--ELTYSLHCDLK 302

Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            ++S GIA    +    S+ ++ AD+ALY+AK +GRNRVV   D 
Sbjct: 303 ASLSVGIAAYSPELPDASSWLHEADKALYLAKSTGRNRVVSAEDA 347


>gi|268680356|ref|YP_003304787.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618387|gb|ACZ12752.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 390

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/195 (31%), Positives = 105/195 (53%), Gaps = 12/195 (6%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------ 124
           LV + + ++ L+  +    L  L    + +  L++ID L+ + N   F   L        
Sbjct: 194 LVSLGVAMAYLVRLLRKHHL--LVEESDELRLLNQIDPLTNVSNRRVFERWLEEKMTLYK 251

Query: 125 -YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            +     ++  DID+FK++ND +GH VGD+V+  L++++         + R GGEEFA  
Sbjct: 252 THRLSSCMIMMDIDFFKKVNDTYGHLVGDEVLIALANRMKHYVRDNDCLVRFGGEEFALL 311

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPS--IHITISAGIAER-CHKEPISTIIYRA 240
              +S +   I+A  LR+++E  +I++   PS  I +T+S G++    +   I  II RA
Sbjct: 312 LFNTSAKRGYIIAERLRRMVEALKISLPHHPSACISVTMSFGMSTFLNYDTTIENIISRA 371

Query: 241 DQALYVAKKSGRNRV 255
           D+A+Y+AKK GRNRV
Sbjct: 372 DKAMYLAKKEGRNRV 386


>gi|221210016|ref|ZP_03582997.1| diguanylate cyclase [Burkholderia multivorans CGD1]
 gi|221170704|gb|EEE03170.1| diguanylate cyclase [Burkholderia multivorans CGD1]
          Length = 493

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 9/185 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFF 134
             I    +    ++   I  L+R D L+GL N     + L     +        +++++ 
Sbjct: 298 AVIIVEDVTARRLTEQHIRHLARHDALTGLPNRHELHAELERMLSRPPRRPDTAVAVMYL 357

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND FGH  GD+++  ++++L           R+GG+EF  A   ++    + 
Sbjct: 358 DLDGFKAINDRFGHQAGDELLTQVAERLGRTLRDGALAARIGGDEFVVAVDDTTMDACSR 417

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +A  L   I ++   +S G ++   IS GIA          +I +AD ALY AK +G+ R
Sbjct: 418 VAAQLIAQI-SAPYTLSIGETVRFGISIGIALDDGHGTPDELIRQADSALYDAKSAGKGR 476

Query: 255 VVCFS 259
              +S
Sbjct: 477 YRFYS 481


>gi|209886481|ref|YP_002290338.1| putative diguanylate cyclase [Oligotropha carboxidovorans OM5]
 gi|209874677|gb|ACI94473.1| putative diguanylate cyclase [Oligotropha carboxidovorans OM5]
          Length = 352

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 13/183 (7%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDN 145
           L  +  R    ++ D L+ L N  A      +         + LS++  DID+FK+ ND 
Sbjct: 172 LRDAEER----AKTDTLTSLPNRRALEEFFRAAQMRAMEVEDPLSLLMLDIDHFKKFNDT 227

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH VGD+VI  ++  L           R GGEE  A   G+       +A  +R+ +  
Sbjct: 228 YGHNVGDQVIRLIASVLRERVRENDLPARYGGEELIAVLPGADLATCRAVAERIRETVAG 287

Query: 206 SQI-NISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             +   S+G S+  I++S G+A+    E ++++I R D+ALY AK SGRN V+   D+ +
Sbjct: 288 CHLTRRSTGESLPDISVSVGVAQFRPGESMASLIERCDRALYKAKASGRNCVITEDDLTD 347

Query: 264 NTC 266
             C
Sbjct: 348 ADC 350


>gi|189425520|ref|YP_001952697.1| diguanylate cyclase [Geobacter lovleyi SZ]
 gi|189421779|gb|ACD96177.1| diguanylate cyclase [Geobacter lovleyi SZ]
          Length = 637

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 10/176 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E      ++ +L+  D L+G  N   F   L         +  +LS++  D+D FK+
Sbjct: 460 DVTERRQLEQQLQRLAETDPLTGTANRRRFYDVLTVEISRSLRHGRQLSVLMLDLDNFKE 519

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH  GD++++ L   L  V  T   +GR GG+EF   A  +   EA +LA  L  
Sbjct: 520 INDTNGHDTGDRILSRLVALLGDVLRTSDLLGRSGGDEFLILAPETDAVEARMLAEKLLV 579

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +     +  +G    +++S G A   + +    ++ RADQALY AK+ GRNR   
Sbjct: 580 AVREGLRDPLAGQ---VSVSIGAATLLNGDGPDDLVKRADQALYRAKQYGRNRFEV 632


>gi|114567601|ref|YP_754755.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338536|gb|ABI69384.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 459

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 88/184 (47%), Gaps = 18/184 (9%)

Query: 88  SILKELFISYNRISQL-------SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVF 133
            + +EL     ++ +L       +  D L+GL NH   +  L         Y ++L+I+ 
Sbjct: 280 RMKEELEEKNQQLRELNRILQVQAITDSLTGLYNHRQVLEKLQLEIARANRYQQELTIMM 339

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK IND FGH VGD V+  ++  +          GR GGEEF      ++     
Sbjct: 340 LDIDHFKSINDEFGHQVGDVVLVEVAQIIKRNLRNIDIAGRYGGEEFLIILPQTNLNNGR 399

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +   +R+ +E      S      IT+S GI++   +E +   I RADQ LY AK+ GRN
Sbjct: 400 QVGERIRRQVEIEGFEDSKE---GITVSIGISQHQGEEMVDY-IERADQLLYRAKRKGRN 455

Query: 254 RVVC 257
           R+ C
Sbjct: 456 RIEC 459


>gi|332799635|ref|YP_004461134.1| GAF sensor-containing diguanylate cyclase [Tepidanaerobacter sp.
           Re1]
 gi|332697370|gb|AEE91827.1| diguanylate cyclase with GAF sensor [Tepidanaerobacter sp. Re1]
          Length = 567

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 67/197 (34%), Positives = 104/197 (52%), Gaps = 15/197 (7%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-- 128
           L +++I  S     ++ + L      ++  SQ++  D L+GL NH+   S +        
Sbjct: 369 LTLMNILASQAAVALTNAQL------FDETSQMAITDGLTGLYNHTYIYSEMERQMRGIN 422

Query: 129 -----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                 S++  D+D+FK  ND +GH VGD ++  L++ L         +GR GGEEFA  
Sbjct: 423 NAGGIFSLIIIDVDHFKVYNDMYGHIVGDIILKNLAEVLKKNVRDKDIIGRYGGEEFAII 482

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQ 242
             G    EA I+A  +RKI+E + +      +I+ITISAGIA    +   +  ++ +ADQ
Sbjct: 483 LPGIPSLEAMIIAERIRKIVEKTALATVENENIYITISAGIAAYPTNAASVEDLVDKADQ 542

Query: 243 AL-YVAKKSGRNRVVCF 258
           A+ + AKK GRNRVV F
Sbjct: 543 AMLFGAKKEGRNRVVIF 559


>gi|325971350|ref|YP_004247541.1| diguanylate cyclase [Spirochaeta sp. Buddy]
 gi|324026588|gb|ADY13347.1| diguanylate cyclase [Spirochaeta sp. Buddy]
          Length = 340

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 76/271 (28%), Positives = 120/271 (44%), Gaps = 23/271 (8%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY- 63
              FL + +       SF  ++  +    F  ++I   I ++++FL              
Sbjct: 70  FSAFLIVAVAFIGTWASFLINSRAVLCDFFPLVYITGSIILSSLFLPIAATFAVIASHAV 129

Query: 64  -----------ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112
                      +  +N     I I    LL  I+  ++K      N++ + S  D L+GL
Sbjct: 130 LLVLVVLKTPILQTQNWPSFFIFILFVSLLSTIANHLIK---TQINQLQESSIRDHLTGL 186

Query: 113 LNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N   F  +L        S N  L I+  D+DYFK+ ND +GH  GD V+  LS+ ++  
Sbjct: 187 FNRRYFEETLKNKLKRVQSVNYSLGILLLDVDYFKRFNDTYGHDAGDAVLIELSNIMLHH 246

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
           F   + + R GG+EFA     + ++E  +LA  L K + N  +         +TIS G A
Sbjct: 247 FDISISICRYGGDEFAILLPKTQKEELMLLAETLVKKVRNHVVMYKGKSLGSMTISCGCA 306

Query: 226 ERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
              H  E I+  I RADQALY AK+ G+++V
Sbjct: 307 IYNHTTEDITEFIKRADQALYQAKEKGKDQV 337


>gi|320668518|gb|EFX35345.1| putative diguanylate cyclase YedQ [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 558

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 536 LADRRLYLAKQAGRNRV-FASD 556


>gi|296161321|ref|ZP_06844129.1| diguanylate cyclase [Burkholderia sp. Ch1-1]
 gi|295888479|gb|EFG68289.1| diguanylate cyclase [Burkholderia sp. Ch1-1]
          Length = 607

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 75/272 (27%), Positives = 124/272 (45%), Gaps = 25/272 (9%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLT-PFYGLEYI---LVEN 68
           L   K L+       ++   I   + I +V+ +    LF   LT P + L +    L   
Sbjct: 305 LGLAKPLDDVLSGANLLGNQIVRMVLIFSVLALFLAILFARALTKPLHILAHAATHLFAE 364

Query: 69  LSLVIISITISLLLGYISG---SILKE-------LFISYNRISQLSRIDCLSGLLNHSAF 118
            ++  + +  +  +G ++     + +E       L      +  L+  D L+GL N   F
Sbjct: 365 HAMHTLPLNRTDEIGVLARCFERLRREIKSQMDVLHAKQRELVHLATHDVLTGLPNRVLF 424

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           +  L           E L+++F D+D FKQIND FGH VGDKV+A ++ +L  V  +   
Sbjct: 425 MEKLENAIEEAARRQECLAVLFVDLDRFKQINDQFGHSVGDKVLAAVARRLKQVLCSADV 484

Query: 172 VGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
           V RLGG+EF     G   QEAA  +A+ +   + N ++ I  G S+ +  S GI++    
Sbjct: 485 VARLGGDEFIVLIEGPRSQEAAPAIASRIMATL-NEEVRI-DGQSMTVGASIGISQFPDD 542

Query: 231 E-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                 ++  AD A+Y AK  GR   + + D+
Sbjct: 543 SGTAEELLLNADAAMYAAKSGGRCAYLRYHDV 574


>gi|224373318|ref|YP_002607690.1| diguanylate cyclase [Nautilia profundicola AmH]
 gi|223588594|gb|ACM92330.1| diguanylate cyclase [Nautilia profundicola AmH]
          Length = 463

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/174 (35%), Positives = 86/174 (49%), Gaps = 11/174 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQI 142
           +K+       + ++S  D L+ + N      SL S  E        LSI+FFDID FK+I
Sbjct: 289 IKKRHKLEEELKKISFYDSLTDIYNRYKIDLSLKSQIELAKKYKIPLSIIFFDIDDFKKI 348

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH VGD+V+  LS  +          GR GGEEF      +    A  +AN L+K 
Sbjct: 349 NDTYGHKVGDEVLIELSKLIKRNIRQTDIFGRWGGEEFIIILPNTDLTTATHIANKLKKA 408

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           IE     I      H+T S G+ E    + ++T+  RAD  LY AK  G+NRV+
Sbjct: 409 IEEHSFPIIK----HLTCSFGVTELKDNDSLNTLTVRADSFLYEAKNKGKNRVI 458


>gi|319427747|gb|ADV55821.1| diguanylate cyclase with PAS/PAC sensor [Shewanella putrefaciens
           200]
          Length = 324

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 77/273 (28%), Positives = 123/273 (45%), Gaps = 29/273 (10%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63
              D  + WL  ++ +ES     FM+    F S      +F       +    P  G   
Sbjct: 60  RFPDLPATWL--KQKMES----VFMLKNRAFISWEQRPYVFQ------FKNYRPITGRAD 107

Query: 64  ILVENLSLVIISIT------ISLLLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNH 115
            + +N++L+ ++        IS+++  ++   +   +L  +  ++ +LS+ D L+ L N 
Sbjct: 108 FMYQNVTLLPLASLTGKITHISVIVYDVTDIAVNKLQLKAANEQLERLSQTDGLTQLHNR 167

Query: 116 SAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
             +   L         YN+  S+V  DID FK IND +GH  GDKVI  ++  L      
Sbjct: 168 RHWQLCLEHEFDLYARYNDIASLVMIDIDNFKYINDTYGHVAGDKVIQHIAHILSQSLRE 227

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
               GR GGEEFA     +S ++A      LR+ I  S I +     I +T+S G+ E  
Sbjct: 228 TDCAGRYGGEEFAVVMPKTSGEDALHFTERLREKIAESTI-VYESLKIKVTVSLGVCEIG 286

Query: 229 -HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            H    S  I  +D+ALY AK+ GRN  V  ++
Sbjct: 287 KHISSSSNWISCSDKALYEAKQKGRNCSVLHTE 319


>gi|301383442|ref|ZP_07231860.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato Max13]
          Length = 674

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
            S L+E       ++ ++  D L+ L N +  ++ L         + E+ +++F D+D F
Sbjct: 226 QSRLQERERISEELAYIAFHDELTALFNRAYLMNELADAFSNPDHHYERATVLFLDLDGF 285

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
           K +ND+ GH  GD+++  ++++L         + R+GG+EFA   +G  + + A  +A  
Sbjct: 286 KVVNDSMGHLAGDQLLKRVANRLQNCVRANDVLARIGGDEFAILLVGKDQPETAVKMAER 345

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           +   +  + I I  G  I I+ S GI            ++  AD A+Y AKK GR R   
Sbjct: 346 IVSQLHAA-IEI-EGQDIFISCSIGIVTAGEGHSKPEDLLRDADVAMYSAKKQGRGRWSL 403

Query: 258 FSDIENNTC 266
           F+       
Sbjct: 404 FNASMREAA 412


>gi|218705448|ref|YP_002412967.1| putative diguanylate cyclase [Escherichia coli UMN026]
 gi|218432545|emb|CAR13438.1| putative diguanylate cyclase [Escherichia coli UMN026]
          Length = 564

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGASLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 542 LADRRLYLAKQAGRNRV-FASD 562


>gi|194365644|ref|YP_002028254.1| diguanylate cyclase/phosphodiesterase [Stenotrophomonas maltophilia
           R551-3]
 gi|194348448|gb|ACF51571.1| diguanylate cyclase/phosphodiesterase [Stenotrophomonas maltophilia
           R551-3]
          Length = 710

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 86/182 (47%), Gaps = 10/182 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L  +   ++Q +  D L+ L N       +            + +++F D+D FKQ+ND 
Sbjct: 258 LTDAQQELTQAALHDPLTRLPNRLLLQRRIVQALAEAEQGGSRFAVMFMDLDGFKQVNDA 317

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD ++  ++++   +      + RLGG+EF        +++   LA  + + + +
Sbjct: 318 YGHQAGDALLVAVAERTRQLLRPNDMLARLGGDEFVLVVRIEHDEDLPTLARRILQAVGS 377

Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
               + +   + +T S G+A    H      ++  AD A+Y AK+SGRN  V F+D  N+
Sbjct: 378 GP--LLADNELQVTASIGVAICPDHAASERQLMAFADAAMYQAKESGRNAFVLFADWMND 435

Query: 265 TC 266
           + 
Sbjct: 436 SA 437


>gi|24372022|ref|NP_716064.1| sensory box protein [Shewanella oneidensis MR-1]
 gi|24345889|gb|AAN53509.1|AE015491_1 sensory box protein [Shewanella oneidensis MR-1]
          Length = 1491

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 13/205 (6%)

Query: 72   VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
            V+ S+  + +   +  S + E   +   + +L+  D L+GL N S F       I +   
Sbjct: 1025 VMQSVNQNAIHYVVVFSDITERKRTEADLRRLANYDVLTGLPNRSLFSNRLMQSIQAAEQ 1084

Query: 125  YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
              EKL+++F D+D FK +ND++GH +GD ++   S++L    G+   + R GG+EF    
Sbjct: 1085 NGEKLALLFLDLDRFKHVNDSYGHSMGDALLVEASNRLQSCIGSEHLLCRFGGDEFVILL 1144

Query: 185  LGSSE-QEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRAD 241
                E  +   LA  L  +I+   ++    G   +I+ S GI+            I  AD
Sbjct: 1145 KNVKELSDINHLAEQLLAQIVAPFRLF---GREFYISTSIGISIWPDDAMQPEAFIKNAD 1201

Query: 242  QALYVAKKSGRNRVVCFSDIENNTC 266
             A+Y AK+ GR     +S   N   
Sbjct: 1202 LAMYHAKEEGRGNFKYYSSERNAQA 1226


>gi|117920751|ref|YP_869943.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. ANA-3]
 gi|117613083|gb|ABK48537.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. ANA-3]
          Length = 752

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 87/187 (46%), Gaps = 9/187 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQ 141
           S + E   +   I   +  D L+GL N +A    +             S +  D+D FKQ
Sbjct: 299 SDISERKKAAQLIKYQANNDPLTGLANRNALFRQIQELISADSLTPGFSFMLMDLDNFKQ 358

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           +ND +GH  GD ++  + +Q+           RLGG+EFA    G  +++E + LA+ + 
Sbjct: 359 VNDTYGHDKGDALLVQVVEQIKTCLNEQAVFARLGGDEFALLLPGLVTQRELSQLADKIN 418

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           K +   +  +S    ++ ++S GIA        +  ++  ADQA+Y++K  GRNR   F+
Sbjct: 419 KRVYQ-RYELSHDKGVYSSVSIGIARFPEDALDLEQLLNCADQAMYISKADGRNRYHFFT 477

Query: 260 DIENNTC 266
           +      
Sbjct: 478 EQMQQNA 484


>gi|254228524|ref|ZP_04921949.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           sp. Ex25]
 gi|262392704|ref|YP_003284558.1| sensory box/GGDEF family protein [Vibrio sp. Ex25]
 gi|151938906|gb|EDN57739.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           sp. Ex25]
 gi|262336298|gb|ACY50093.1| sensory box/GGDEF family protein [Vibrio sp. Ex25]
          Length = 815

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 13/190 (6%)

Query: 81  LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           L+ YI     +        ++ +++  D L+ L N +  +S L  +        +  + +
Sbjct: 370 LINYICVFEDISVRKAHEEKLQRMAFYDPLTNLPNRTHLLSLLEQHIETGHKNQQTFATL 429

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F DID+FK IND+ GH  GD++++ L+ +L  +      V R+GG+EF           A
Sbjct: 430 FLDIDHFKHINDSMGHFCGDQLLSKLAIRLQDILHLNAHVARIGGDEFVIILPDVHSDVA 489

Query: 193 AILANDLRKIIE--NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
             L   +  I+       ++++  S+ ++ S GIA      +   T++  AD A+Y+AKK
Sbjct: 490 --LLETVGDILSVFQQPFDLANHDSLRVSTSIGIALYPRDGQDSETLLKNADTAMYLAKK 547

Query: 250 SGRNRVVCFS 259
           +GRN    +S
Sbjct: 548 NGRNGYAFYS 557


>gi|297569590|ref|YP_003690934.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925505|gb|ADH86315.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 724

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 80/200 (40%), Gaps = 23/200 (11%)

Query: 88  SILKELFISYNR-------ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVF 133
             + EL +           + +L+  D L+GL N    +  L           +  +++F
Sbjct: 270 RDITELKLMEEEKQRKEVEVYRLAFYDPLTGLPNRRLLLDRLGQAFAASERTGQHGALLF 329

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA------LGS 187
            D+D FK IND  GH  GD ++   + +L         V R GG+EF            +
Sbjct: 330 LDLDRFKNINDTRGHQAGDLILREAARRLRATVREDDTVSRQGGDEFVVLLQYLATDDAT 389

Query: 188 SEQEAAILANDLRKIIENS-QINISSG-PSIHITISAGIAER-CHKEPISTIIYRADQAL 244
           + ++A  +A  +R  +    Q +   G    H++ S G+     H+     +   AD A+
Sbjct: 390 AIKQAGRVAEKIRLALSKPFQFSECQGDCRFHLSASIGVTLFVGHQLSAEDLFKYADTAM 449

Query: 245 YVAKKSGRNRVVCFSDIENN 264
           Y AK++GR+ V         
Sbjct: 450 YQAKQAGRDTVRFHDPAMQQ 469


>gi|110642061|ref|YP_669791.1| hypothetical protein ECP_1889 [Escherichia coli 536]
 gi|110343653|gb|ABG69890.1| hypothetical protein YedQ [Escherichia coli 536]
          Length = 564

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LLL  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTTMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G++  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 542 LADRRLYLAKQAGRNRV-FASD 562


>gi|21107752|gb|AAM36438.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str.
            306]
          Length = 1009

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 8/176 (4%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
            +L  L I  +   + +  D L+GL N   F  +L             L +   DID+FK+
Sbjct: 834  LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSARPLVLAILDIDHFKR 893

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            IND++ H  GD V+  +   L           RLGGEEFA     ++  EA  L   +R 
Sbjct: 894  INDHYSHASGDAVLHEVGVLLTAAARASDLPARLGGEEFALLLADTTLDEAQALCLRIRA 953

Query: 202  IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +  +++ N  S   + +T SAG+A    ++  S+++ RAD ALY AK +GR+R+  
Sbjct: 954  LF-HARHNWGSVEGLQVTFSAGVAALRDEDTGSSLMQRADHALYEAKSAGRDRICV 1008


>gi|323528074|ref|YP_004230226.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Burkholderia sp. CCGE1001]
 gi|323385076|gb|ADX57166.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1001]
          Length = 667

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 92/187 (49%), Gaps = 11/187 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYF 139
           SG+ + E  ++  R++QL+  D L+GL N +A    + +        E + ++F D+D F
Sbjct: 220 SGTDITEERLAQERLTQLANTDSLTGLANRNAIQDKIRTAIEEAAPGESVGVLFLDLDNF 279

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND++GH  GD++I  +S  +         + RLGG+EF   A   +  E    A  +
Sbjct: 280 KKVNDHYGHVFGDRLIRDVSAAIGTCLNEGDTLARLGGDEFIVLAAKGTAHELEATAQRI 339

Query: 200 RKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +E  +   S G   ++   S GIA    H + + ++I  AD A+YVAK  G+     
Sbjct: 340 ---LERMRTPFSLGLVEVYTGCSIGIARYPEHGDNLESLIRSADTAMYVAKDEGKRTHRV 396

Query: 258 FSDIENN 264
           FS   N 
Sbjct: 397 FSPEMNR 403


>gi|256823482|ref|YP_003147445.1| PAS/PAC sensor-containing diguanylate cyclase [Kangiella koreensis
           DSM 16069]
 gi|256797021|gb|ACV27677.1| diguanylate cyclase with PAS/PAC sensor [Kangiella koreensis DSM
           16069]
          Length = 427

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 11/182 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
              + E      ++   +  D L+ L N S F   L          +E+L+++F D+D F
Sbjct: 248 ARDITERKFIEQQVEHQAHYDTLTDLPNRSLFSDRLEQAIRLAHRQHEQLALLFLDLDKF 307

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K +NDN+GH +GD ++  ++ ++         VGR+GG+EF        S   A  +A  
Sbjct: 308 KPVNDNYGHAIGDILLQQVAQRMKDCLRESDTVGRIGGDEFLVLLPHVESVDSATHIAEK 367

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L + I  S     +   I I+ S GIA    H   +  +I  ADQA+Y AK    N V  
Sbjct: 368 LLQAI--SSPFRINRIDIEISCSIGIALYPTHGNTVLELIQVADQAMYKAKNQKGNLVFV 425

Query: 258 FS 259
             
Sbjct: 426 AD 427


>gi|225850663|ref|YP_002730897.1| FOG: EAL domain protein [Persephonella marina EX-H1]
 gi|225645507|gb|ACO03693.1| FOG: EAL domain protein [Persephonella marina EX-H1]
          Length = 784

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 11/165 (6%)

Query: 104 SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  D L+GL N   F + L           E ++++F D+D FKQ+ND +GH +GD+++ 
Sbjct: 619 AFYDGLTGLPNRLLFYNRLQHTLLRARRNREYVAVMFLDLDGFKQVNDTYGHDIGDELLK 678

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPS 215
            +  +L         V RL G+EF       +S +   ++A  +    +  +  + +G  
Sbjct: 679 EVGKRLQHTVRKIDTVARLAGDEFTVIIENLNSPENVNVIAKKILNSFK--EPFVINGNK 736

Query: 216 IHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I++  S GIA          T+I  AD A+Y+AKKSG+NR V ++
Sbjct: 737 INVGTSIGIAVFPLDGTDADTLIKNADMAMYLAKKSGKNRYVVYT 781


>gi|254480327|ref|ZP_05093575.1| cyclic diguanylate phosphodiesterase domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214039889|gb|EEB80548.1| cyclic diguanylate phosphodiesterase domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 763

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 87/200 (43%), Gaps = 23/200 (11%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
            + +K++  + NR+ +++  D L+ L N   F   L           + L+++F D+D F
Sbjct: 295 NTAVKQVTRTKNRLRKMAYYDALTSLPNRRLFTEQLSLLLKLAQRNKQTLALLFLDLDNF 354

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR------------LGGEEFAAAALGS 187
           K+IND+ GH  GD ++  +  +L         V              LGG+EF       
Sbjct: 355 KRINDSLGHSAGDLLLREVGQRLSKCVRDSDVVAHYADPTAKIDVSRLGGDEFTVVLNDL 414

Query: 188 SEQEAA-ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALY 245
              E+  ++A  L  I+  S+  +  G  + IT S GIA    H   +  ++  +D A+Y
Sbjct: 415 DAPESVGVVAERL--ILALSEPMLIDGHELVITPSIGIAIAPEHANEVEGLLRCSDTAMY 472

Query: 246 VAKKSGRNRVVCFSDIENNT 265
            AK SG++  + +       
Sbjct: 473 HAKASGKSTYLVYESSMEEA 492


>gi|94264442|ref|ZP_01288231.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|93455132|gb|EAT05354.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
          Length = 833

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 90/185 (48%), Gaps = 12/185 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + E+     R+ +++  D L+GL N       L            +L++ + D+D FK
Sbjct: 385 SDISEIKEQQQRLERIAHYDTLTGLPNRDLLADRLNHAMVQAIRRQTRLAVAYLDLDGFK 444

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH VGD ++  L+ ++         +GRLGG+EF A      + E  +    L+
Sbjct: 445 AINDTHGHDVGDFLLRTLAGRMQQTLRESDTLGRLGGDEFVAIFQDLPDNETCLPL--LQ 502

Query: 201 KIIENSQINISSGPSI-HITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
           +++  + + +S   +I  ++ S G+      E      ++ +ADQA+Y AK++G+NR   
Sbjct: 503 RLLNAAAMPVSYQETILQVSASLGVTFFPQSEKIDADQLLRQADQAMYQAKQTGKNRYHL 562

Query: 258 FSDIE 262
           F  ++
Sbjct: 563 FDAVQ 567


>gi|71734942|ref|YP_274784.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71555495|gb|AAZ34706.1| GAF domain/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 960

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 11/194 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI----- 131
           T ++LL        +EL  +  R+   +  D L+GL N S     L        +     
Sbjct: 507 TANVLLEARVRDRTRELDQANARLQHENSHDSLTGLPNRSHLQHRLKQAWRDFCLNGQQL 566

Query: 132 --VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
             +F D+D FK IND+ GH  GD ++   +++L         + RLGG+EFA  ++ +  
Sbjct: 567 IVMFIDLDRFKMINDSLGHHCGDMLLVQAAERLRSCMREGDLLARLGGDEFAVLSIDAPL 626

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
           Q    +A  +    E  Q  +    S+  + S G+  A+    +  + ++  AD A+Y  
Sbjct: 627 QAGTDIAQRILTAFE--QPFVIDDHSVFSSCSIGVVGADSRFHQEPADLLRDADTAMYRV 684

Query: 248 KKSGRNRVVCFSDI 261
           K  GR+    F+  
Sbjct: 685 KNGGRDSFAVFNQA 698


>gi|18310542|ref|NP_562476.1| GGDEF/HD domain protein [Clostridium perfringens str. 13]
 gi|18145223|dbj|BAB81266.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 563

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/195 (32%), Positives = 92/195 (47%), Gaps = 9/195 (4%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------Y 125
           +I   + +L  +  G  +K        +  L   D L+G+ NH  F   L          
Sbjct: 162 LILAGVFVLTAWTLGFYVKTENDHIKELQTLVNEDGLTGVYNHRYFYDKLREKMHISEVE 221

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           NEKLS++F DIDYFK  ND +GH  GD+ +  +   L  +      V R GGEEFA    
Sbjct: 222 NEKLSLIFMDIDYFKHYNDLYGHQKGDEALKKIGKLLKNIARENDLVARYGGEEFAIILP 281

Query: 186 GSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERCHKEPIS-TIIYRADQA 243
            +SE+EA  +A  +R  +E +      + P+ + T+S GIA    K      ++  AD A
Sbjct: 282 NTSEEEATKIAERIRNKVEKTYFEGQENQPNANFTVSVGIAVFPDKAKSELELVKCADDA 341

Query: 244 LYVAKKSGRNRVVCF 258
           LY AK   +NRV  +
Sbjct: 342 LYRAKFFHKNRVETY 356


>gi|148253697|ref|YP_001238282.1| PAS/PAC sensor-containing diguanylate cyclase [Bradyrhizobium sp.
           BTAi1]
 gi|146405870|gb|ABQ34376.1| diguanylate cyclase with PAS/PAC sensor [Bradyrhizobium sp. BTAi1]
          Length = 636

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 13/194 (6%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIV 132
           L G+++    + +      R+  L+  D L+GL N   F   L     +       L+++
Sbjct: 429 LDGFVAVTRDVTQQKALQGRLETLAIEDGLTGLANRRRFDERLLEEWGRAYRDKTSLALL 488

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQE 191
             DID+FK  ND++GHP GD+ +  ++  L      +     R GGEEFA     +    
Sbjct: 489 MIDIDHFKAFNDSYGHPAGDECLHTVAGILADEAQRSSDLAARYGGEEFAILLPNTDAAG 548

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK----EPISTIIYRADQALYVA 247
            A L   +R+ +  ++I         +T S G A            +++I  AD+ALY A
Sbjct: 549 CARLGERIRRALHEARITHDHNGPGIVTASIGGAVCRPGFERSAGPASLIEAADRALYAA 608

Query: 248 KKSGRNRVVCFSDI 261
           K  GR+RVV   +I
Sbjct: 609 KDGGRDRVVMAGEI 622


>gi|307824938|ref|ZP_07655160.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Methylobacter tundripaludum SV96]
 gi|307733985|gb|EFO04840.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Methylobacter tundripaludum SV96]
          Length = 1572

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/193 (27%), Positives = 89/193 (46%), Gaps = 14/193 (7%)

Query: 78   ISLLL--GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEK 128
            +SLLL  G++S SI  E      ++ + +  D L+GL N   F + L             
Sbjct: 1119 LSLLLQAGHLS-SIAIERKRIEQQMYRQASYDQLTGLPNRRLFGNRLREEIVKAERGAYS 1177

Query: 129  LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            L+++F D+D FK++ND  GH  GD ++   + ++ +       V RLGG+EF        
Sbjct: 1178 LAVLFIDLDRFKEVNDTLGHDAGDDLLVEAAQRIRLCVRESDTVARLGGDEFVVILPKVD 1237

Query: 189  EQEAA-ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYV 246
            E      +A  +   +   +  +    + +++ S GIA      +    +I  ADQA+YV
Sbjct: 1238 EIVPQDRVAQCIVDAM--VRPFLLGEQNAYVSASIGIAGYPQDADNAEVLIGCADQAMYV 1295

Query: 247  AKKSGRNRVVCFS 259
            AK  GRN    F+
Sbjct: 1296 AKSMGRNCFSFFT 1308


>gi|303246879|ref|ZP_07333156.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio fructosovorans JJ]
 gi|302491896|gb|EFL51776.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio fructosovorans JJ]
          Length = 432

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 58/160 (36%), Positives = 76/160 (47%), Gaps = 11/160 (6%)

Query: 103 LSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+ +D L+  LN                 Y   LS+V  DID+FK IND  GH  GD V+
Sbjct: 267 LANLDPLTRALNRRKLADVLTDEAARADRYGAPLSVVLLDIDHFKAINDTHGHEAGDAVL 326

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L+ +L         + R GGEEF   A G   +  A LA  LR+ + +         +
Sbjct: 327 VELAGRLRATLRQVDRLARFGGEEFVVVAPGVGLEATAELAERLRQAVADKDF----AAT 382

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +T S G+AER   E     + RAD+ALY AK SGRNRV
Sbjct: 383 GRVTASFGVAERVPGEDPERALGRADKALYRAKNSGRNRV 422


>gi|229590216|ref|YP_002872335.1| putative EAL/GGDEF domain-containing signaling protein [Pseudomonas
           fluorescens SBW25]
 gi|229362082|emb|CAY48984.1| putative EAL/GGDEF domain signalling protein [Pseudomonas
           fluorescens SBW25]
          Length = 698

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 98/214 (45%), Gaps = 13/214 (6%)

Query: 64  ILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +LV  L+++ I++  SLL   +      +   L  +   ++ L+  D L+GL N +    
Sbjct: 220 VLVTTLAVLAIALLTSLLDARLEARTAVLADSLTQANQELTHLALHDMLTGLPNRTLLAD 279

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            +    +         +++F D+D FK +ND FGH +GD++++ +  +L     +   + 
Sbjct: 280 RIQQAMQAVKEQGGCFALMFIDLDGFKPVNDAFGHHMGDQLLSEVGVRLREDLRSQDTLA 339

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           R+GG+EF      +   +A  LA   R+++  ++    +   + I+ S GIA    +   
Sbjct: 340 RIGGDEFVLLVQLTQPDDALGLAE--RQVVLINRAFRVAEHELKISASVGIAMFPGNGNS 397

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              ++  AD A+Y AK  G+N    F    N   
Sbjct: 398 PQELLMNADAAMYHAKGMGKNGYSFFDASMNTNA 431


>gi|196045510|ref|ZP_03112741.1| GGDEF domain protein [Bacillus cereus 03BB108]
 gi|229187644|ref|ZP_04314781.1| GGDEF domain protein [Bacillus cereus BGSC 6E1]
 gi|196023717|gb|EDX62393.1| GGDEF domain protein [Bacillus cereus 03BB108]
 gi|228595798|gb|EEK53481.1| GGDEF domain protein [Bacillus cereus BGSC 6E1]
          Length = 351

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 110/230 (47%), Gaps = 18/230 (7%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI---SGSILKE 92
           S+F   + F  N++  +I   P +    IL +++S+V + +  S +  YI   S + + +
Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLF----ILFKDMSIVALYLVCSSVAAYITFISANYVLQ 179

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
               + ++ Q + ID L+GL N   F   +  +       N  L ++  DID+FK +ND 
Sbjct: 180 SNELFQKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSVNDT 239

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GHP GD+V+  +   L  V   P    R GGEEFA             +   +R  +E 
Sbjct: 240 YGHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAAVEK 299

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               +  G  I IT+S GI+    ++     I  AD ALY +K++GRN+V
Sbjct: 300 HSFQLLDGTKIKITVSVGISVY--EQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|157373984|ref|YP_001472584.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157316358|gb|ABV35456.1| putative diguanylate cyclase (GGDEF domain) [Shewanella sediminis
           HAW-EB3]
          Length = 578

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 77/288 (26%), Positives = 123/288 (42%), Gaps = 36/288 (12%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIF-----IANIFLFY---------- 52
            L  ++  ++ L       FM+ FS F  I +  + F      A +FL            
Sbjct: 297 LLMAFIADDQVLGLIFAFDFMLLFS-FMMILLGIMAFNVGNPSAKVFLLASTSSMTGAAV 355

Query: 53  -----IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107
                 G  PF  L Y   E + ++I  + ++L L     +  +E  I+       ++ID
Sbjct: 356 TGMAVWGFIPFTDLTYRAAE-IGIIIDIVLLALALAVKFRATEREKLIA----EHQAKID 410

Query: 108 CLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
            L+GL N  AF                +S++  DIDYFK IND +GH VGD+V+   +  
Sbjct: 411 PLTGLKNRRAFYEITPSFWKQKRTRVGVSMIIIDIDYFKAINDTYGHTVGDEVLVQFATL 470

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L         V R GGEEF      +  +EA+ ++  L + I      I+    + +T S
Sbjct: 471 LNKNLRQQDIVARWGGEEFILLLPKTRLKEASTISKHLCESISKHAF-IADRNELQVTAS 529

Query: 222 AGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS--DIENNTC 266
            G+A     +  +  +I  ADQ LY AK+ G+N++   +  D+   TC
Sbjct: 530 IGLAHGSPAQFTLEQLISLADQQLYRAKQRGKNQISYENSPDVPGGTC 577


>gi|37676120|ref|NP_936516.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37200661|dbj|BAC96486.1| GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 348

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/172 (36%), Positives = 90/172 (52%), Gaps = 5/172 (2%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNF 146
           +  L      + + +  D LS L N  AF S L +     + LS++  DID+FK  NDN+
Sbjct: 175 ISRLKEQLAEVQRDALFDGLSTLYNRRAFDSDLKALVNAQQNLSLILLDIDHFKTFNDNY 234

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD VI  ++ +L       +   R GGEEFA      S + A   A  LR+ IE  
Sbjct: 235 GHLFGDSVIRAIAKRLQTSCREGIAAYRFGGEEFALIVPNKSLRIARQYAESLRRTIEKL 294

Query: 207 QI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++ +  SG  + +I+ S G+AE    E   ++I RAD+ LY AK+ GRNRV+
Sbjct: 295 KVKDKRSGQQVENISASFGVAELKPDETAESLIERADKLLYEAKQLGRNRVM 346


>gi|83747618|ref|ZP_00944654.1| Hypothetical Protein RRSL_02303 [Ralstonia solanacearum UW551]
 gi|207739698|ref|YP_002258091.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           IPO1609]
 gi|83725670|gb|EAP72812.1| Hypothetical Protein RRSL_02303 [Ralstonia solanacearum UW551]
 gi|206593080|emb|CAQ59986.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           IPO1609]
          Length = 507

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 21/243 (8%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           + +++A      +I+  +       GL         LV +   +++ L Y     L++  
Sbjct: 264 YPLYVAVGAATEDIYASWTSRAWAIGL---------LVAVFNLVTMTLAYQFAKQLEKRL 314

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFG 147
            +  R ++L+  D L+GL N  A  + L    +        +S++  D+D FK  ND++G
Sbjct: 315 AAGRRHAELAVTDALTGLPNRRALDAGLDREWKRALRERWPVSVLMIDVDAFKPYNDHYG 374

Query: 148 HPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  GD  +  ++  +            R GGEEF      +    A  +A  +R+ +   
Sbjct: 375 HLGGDTALKAVARCIQAKACRPGDLAARYGGEEFCIVLPHTDLAGAVAVAEHIRQAVLAL 434

Query: 207 QINISSGPSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRVV-CFSDIE 262
            I  + GP+  +++S G+A        +   ++   AD  LY AK  GRNR +    + E
Sbjct: 435 HIPHAQGPAGILSVSIGVASGMPALAADRPESLTQAADTELYRAKTQGRNRTMPVLPEAE 494

Query: 263 NNT 265
           N+ 
Sbjct: 495 NDA 497


>gi|333004063|gb|EGK23597.1| cellulose synthesis regulatory protein [Shigella flexneri K-272]
 gi|333017836|gb|EGK37143.1| cellulose synthesis regulatory protein [Shigella flexneri K-227]
          Length = 558

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LLL  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G++  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 536 LADRRLYLAKQAGRNRV-FASD 556


>gi|323488321|ref|ZP_08093569.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis
           MPA1U2]
 gi|323397979|gb|EGA90777.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis
           MPA1U2]
          Length = 758

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 90/181 (49%), Gaps = 11/181 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L     ++ +L+  D LSGL N   F+  L         ++EK+++VF D+D FK +N
Sbjct: 312 EQLEKVIRKMEELAYYDVLSGLPNRRLFLEKLEDSIRDAKQHSEKVAVVFIDLDRFKNVN 371

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKI 202
           D+FGH  GD ++   S+++     +   + R GG+EF         E + + L   L+  
Sbjct: 372 DSFGHEFGDLLLQGFSEKIKENLRSDDVISRQGGDEFTIILNNIYDEHDISPLIQRLQTA 431

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +   +  + +G  +HI++S GIA      E    ++  AD A+Y AK  G+N    FSD 
Sbjct: 432 LA--KPMMINGQELHISMSIGIAVYPKDGETTGELLKHADSAMYSAKAKGKNNFQFFSDD 489

Query: 262 E 262
            
Sbjct: 490 M 490


>gi|301018185|ref|ZP_07182702.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
 gi|300399838|gb|EFJ83376.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
          Length = 436

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 234 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 293

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 294 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 353

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 354 CVILPGASLTQAAEVAERIRLKLIEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 413

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 414 LADRRLYLAKQAGRNRV-FASD 434


>gi|296131962|ref|YP_003639209.1| diguanylate cyclase [Thermincola sp. JR]
 gi|296030540|gb|ADG81308.1| diguanylate cyclase [Thermincola potens JR]
          Length = 340

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 8/175 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDN 145
           L     +++Q + +D L+G+ N                S  +K+++   DID+FK +ND 
Sbjct: 167 LRAQLEQVAQTAYVDALTGIWNRRYIEERFPGVLHKADSLGKKVAVFMVDIDHFKVVNDT 226

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD+V+  ++  L           R GGEEF       SE+ A  +A  +R+   +
Sbjct: 227 YGHTNGDEVLRRVARILQRGIRGQDAAVRYGGEEFCVILYDVSEEVAVQIAERIREQ-IS 285

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +  I     + +T+S G+A       +  ++  AD+ LY  K+ GRNRVV   +
Sbjct: 286 REEIIIEERKVRVTVSIGVAFGEPGISVEKLLATADRRLYRGKELGRNRVVWRDE 340


>gi|119946934|ref|YP_944614.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Psychromonas ingrahamii 37]
 gi|119865538|gb|ABM05015.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Psychromonas ingrahamii 37]
          Length = 711

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 55/198 (27%), Positives = 92/198 (46%), Gaps = 25/198 (12%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            + EL  + ++I QL+  D L+GL N +AF       +     Y    +++F D+D FK+
Sbjct: 251 DVTELTQAQDQILQLAHFDSLTGLANRNAFRKRVELAMERAKQYGHLGAVLFLDLDNFKR 310

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG--------------RLGGEEFAAAALGS 187
           IND  GH +GD+++  ++ +L  +      +               RLGG+EF       
Sbjct: 311 INDTLGHSIGDQLLQEVARRLTDIVRGSDSICGTNFNHAIDDNLISRLGGDEFTVLLPEI 370

Query: 188 SE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALY 245
            + ++A   A  +   I    I   SG  I +T S GIA    H E + +++  AD A+Y
Sbjct: 371 GKIKDAEHAARRVLNSI--GDIINLSGHDIVVTPSIGIAIFPHHGENVDSLLKNADAAMY 428

Query: 246 VAKKSGRNRVVCFSDIEN 263
             K++G+N    F +  N
Sbjct: 429 YVKRAGKNDYELFVNSMN 446


>gi|157372280|ref|YP_001480269.1| diguanylate cyclase [Serratia proteamaculans 568]
 gi|157324044|gb|ABV43141.1| diguanylate cyclase [Serratia proteamaculans 568]
          Length = 370

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 66/245 (26%), Positives = 108/245 (44%), Gaps = 21/245 (8%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL 81
            SP  F +     FSI +  V    NIF     +   + L  ++   L L +I    S L
Sbjct: 133 LSPRLFFL-----FSIPVLLVAIAENIF-----INSAFSLVNLISYALMLFLIYSARSRL 182

Query: 82  LGYISGSILKELFISY--NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIV 132
             +   +I +EL       R+S+L+  D L+G+ N   F +   +            S++
Sbjct: 183 EQWFQLAIERELENKQLIERLSKLANRDPLTGIANRRYFDNYFDAVLLRESTLQAPFSLI 242

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQE 191
             D+D+FK+ ND++GH  GD+ +  L+  L          V R GGEEF      S   E
Sbjct: 243 LLDVDFFKKYNDHYGHQQGDECLTRLATCLESATRRSQDLVARYGGEEFIILLPKSDAGE 302

Query: 192 AAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           A  +A  +  ++    +  ++      +T+S G+A+    +    ++  ADQALY AK+ 
Sbjct: 303 AVQVAKRIEGLLAGLAMPHAASEVAQWVTVSQGVAQWQPGQNREQLLAAADQALYRAKEL 362

Query: 251 GRNRV 255
           GRN  
Sbjct: 363 GRNGY 367


>gi|320189897|gb|EFW64549.1| hypothetical protein ECoD_03378 [Escherichia coli O157:H7 str.
           EC1212]
          Length = 430

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 80/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 258 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P  H T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 --VSVAKVSISGLP--HFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|311696941|gb|ADP99814.1| sensory box/GGDEF family protein [marine bacterium HP15]
          Length = 755

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 12/188 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + +   S + I +L+  D L+GL N       L          +   ++VF D+D FK 
Sbjct: 300 DVTDRKQSESEIEKLAFYDPLTGLPNRRLLRDRLAQALTGSNRDHNHGALVFIDLDNFKN 359

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG--SSEQEAAILANDL 199
           IND+ GH  GD+++  + ++L         V RLGG+EF     G  +   +AA     +
Sbjct: 360 INDSAGHLTGDELLVQVGERLKNTVRDWDTVARLGGDEFVLILKGFPAEPADAAAKVEKV 419

Query: 200 RKIIENS--QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            + I ++  +    +G     T S GI     H   +  ++ +AD A++ AK+ GRN + 
Sbjct: 420 CEKIRDALNEPYDLNGIEYTGTPSIGITLFYDHDTSLEELLSQADMAMFRAKEDGRNCIR 479

Query: 257 CFSDIENN 264
            +  +   
Sbjct: 480 FYDCMMQK 487


>gi|119896627|ref|YP_931840.1| PAS/PAC/GGDEF-domain-containing protein [Azoarcus sp. BH72]
 gi|119669040|emb|CAL92953.1| PAS/PAC/GGDEF-domain containing protein [Azoarcus sp. BH72]
          Length = 420

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 11/174 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            L E       + +++  D L+GL N  A   +L        +    LS++  DID+FK 
Sbjct: 244 DLTERIERERALQEIASRDPLTGLYNRRAGEQALELQVQAAHAEGTALSLIIGDIDHFKS 303

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GHP GD+V+A + + L     +     R GGEEF           A  LA  LR 
Sbjct: 304 INDRHGHPAGDRVLAGVGEALRGAVRSRDLAVRWGGEEFVVLVPECGAARALELAERLRS 363

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +   Q          +T+S G+A     E  + ++ RAD+ALY AK  GR+RV
Sbjct: 364 SVAGLQFPAVG----RVTMSLGLATLVAGETAAGLVMRADRALYRAKHGGRDRV 413


>gi|89093140|ref|ZP_01166090.1| hypothetical protein MED92_03647 [Oceanospirillum sp. MED92]
 gi|89082436|gb|EAR61658.1| hypothetical protein MED92_03647 [Oceanospirillum sp. MED92]
          Length = 610

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 105/251 (41%), Gaps = 13/251 (5%)

Query: 17  KNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISI 76
           K L        + + ++  +IF A V  ++        +         L E     I ++
Sbjct: 361 KKLCDQLMQEVLFWSALLIAIFAALVTLLSR--HIVEPILSLKEHATALAEGKRQKISAM 418

Query: 77  TISL----LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSY 125
           T       LL      +   +      +++++  D L+G LN  A        +      
Sbjct: 419 TQRGDEIGLLAESFDRMAAAVETKEKVLTEMASHDPLTGCLNRRALFSAAREELRRASRS 478

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
             KL +   D+DYFK+IND FGH VGD V+   S  +          GR+GGEEFA   +
Sbjct: 479 GSKLCVCLMDLDYFKRINDRFGHQVGDNVLREFSSVVNSCLRVEDKFGRIGGEEFAVLLI 538

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
           GS  + A  +A  +R  +    +       + +T+S G++E    EP    + RAD+ +Y
Sbjct: 539 GSGLESAVEVAERIRMEVMKIALQGIEHEDLEVTVSIGVSEWAEVEPFEQALSRADEKMY 598

Query: 246 VAKKSGRNRVV 256
            AK  GRN+V 
Sbjct: 599 KAKNMGRNQVQ 609


>gi|323972745|gb|EGB67945.1| diguanylate cyclase domain-containing protein [Escherichia coli
           TA007]
          Length = 564

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYEFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 542 LADRRLYLAKQAGRNRV-FASD 562


>gi|307312238|ref|ZP_07591874.1| diguanylate cyclase [Escherichia coli W]
 gi|306907740|gb|EFN38242.1| diguanylate cyclase [Escherichia coli W]
 gi|315059664|gb|ADT73991.1| predicted diguanylate cyclase [Escherichia coli W]
 gi|323379771|gb|ADX52039.1| diguanylate cyclase [Escherichia coli KO11]
          Length = 371

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 107/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVVYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DIDYFK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDYFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      +R+ +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVREGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|291613522|ref|YP_003523679.1| diguanylate cyclase/phosphodiesterase [Sideroxydans lithotrophicus
           ES-1]
 gi|291583634|gb|ADE11292.1| diguanylate cyclase/phosphodiesterase [Sideroxydans lithotrophicus
           ES-1]
          Length = 727

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 104/225 (46%), Gaps = 11/225 (4%)

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLL--LGYISGSILKELFISYNRISQLSRID 107
           L  + L    G+ Y  ++ L+    S+  S+L  +  + GS  K L  +   +   S  D
Sbjct: 252 LDMLNLAGVLGVAYGSMQKLTAQEASVIRSILAVMVMVVGSS-KALSKTLAELEYYSTHD 310

Query: 108 CLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+GL N   F   L         +N + SI+  D+D FK IND +GHP GD  +  +S+
Sbjct: 311 PLTGLHNRRHFNEMLEYEIDRSERHNHEFSILMLDLDDFKDINDTYGHPCGDATLCAVSE 370

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            +           R+GG+EFA     +S++ A  +A  LR  + + +    +G + H T 
Sbjct: 371 IVRSTMRKGDLTTRIGGDEFAIILTETSQEGAREVAEKLRVALRDHKFEAPNGKTFHTTT 430

Query: 221 SAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           S G IA     + IS ++   D  LY AK  G++ V    ++E+ 
Sbjct: 431 SIGLIAYPKDAQNISDLMAGVDIGLYRAKSIGKDSVCSVEEVEDK 475


>gi|241765936|ref|ZP_04763864.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
 gi|241364109|gb|EER59329.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
          Length = 1020

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 82/192 (42%), Gaps = 12/192 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
              + E   +   I +L+  D L+ L N    +  L              +++F D+D F
Sbjct: 577 ARNITERKAAEAEIRRLAFYDELTALPNRRLLLDRLAHATALCAREEHHGALLFLDLDNF 636

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA---ALGSSEQEAAILA 196
           K IND  GH  GD+++  ++ ++         V R+GG+EF        G++ + AA   
Sbjct: 637 KAINDTLGHEWGDRLLVQVAARIQACVRAADTVARMGGDEFVVVLQGLHGAAPEAAAEAE 696

Query: 197 NDLRKIIENSQINISSG-PSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
              +KII         G   +H T S GIA     +EP+  ++ RAD A+Y AK  GRN 
Sbjct: 697 AVAQKIIGALNDPFQVGNRDVHSTPSIGIALFRDAQEPVHELLQRADMAMYQAKALGRNT 756

Query: 255 VVCFSDIENNTC 266
           +  F        
Sbjct: 757 LCFFDPAMQAAA 768


>gi|209546887|ref|YP_002278805.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209538131|gb|ACI58065.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 435

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 65/269 (24%), Positives = 115/269 (42%), Gaps = 25/269 (9%)

Query: 15  HEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL--SLV 72
              ++  F   + +  FS+  +  +A   +   ++       P      ++   L  S  
Sbjct: 149 RHLSIMLFVATSAITIFSVPLAWTVAIACYALCLYFILQWHNPILDAGSVVAATLFFSCG 208

Query: 73  IISITIS-----------LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           II+  ++            LL       + EL  +  R+ +L+R D L+G+ N    + +
Sbjct: 209 IIATVVARRTMNILAQKTFLLDCRDQRRVAELADANARLERLARTDPLTGIANRRWMMET 268

Query: 122 LGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVG 173
           L              +++  DID+FK +ND  GH  GD+ +  ++  +          V 
Sbjct: 269 LEGLWRNDRETGVVAAMLMCDIDHFKALNDKLGHGEGDRCLVKVAGIIQSCVRADRDLVS 328

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAE---RCH 229
           R GGEEF        E EA  +A  +R+ +E + + N SSG    +T+S G+A       
Sbjct: 329 RHGGEEFLIVLPDVDEDEAIAVAKRIRESVEAAALPNPSSGVGPSVTLSVGVALKSALDA 388

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCF 258
              ++ + + AD ALY AK++GRN+V  F
Sbjct: 389 DISLANLQHEADMALYRAKEAGRNQVCVF 417


>gi|88706235|ref|ZP_01103942.1| sensory box/GGDEF family protein [Congregibacter litoralis KT71]
 gi|88699629|gb|EAQ96741.1| sensory box/GGDEF family protein [Congregibacter litoralis KT71]
          Length = 654

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 64/254 (25%), Positives = 114/254 (44%), Gaps = 23/254 (9%)

Query: 33  IFFSIFI-ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK 91
           +  S FI A+  F+A   L +       G     +  +  V+  I ++     ++ +++ 
Sbjct: 140 VSLSAFIEASATFLATSLLPFTLRLLVEGSSETGLMAVMAVLYLIMMTAFARRVNLTVIG 199

Query: 92  ELFISYNR------ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
            L ++Y R      I + +  D L+GL N       LG         N + +++F D+D+
Sbjct: 200 GLEMTYLRSKAEDTIERQALFDELTGLPNRRLLQDRLGQALARAKRNNTQAALMFLDLDF 259

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS---SEQEAAIL 195
           FK++ND+ GH  GD+++  +  +L           RLGG+EF          SE   +++
Sbjct: 260 FKRVNDSLGHSAGDELLVEIGRRLSDFLREADTAARLGGDEFVLLLTDIEGGSEHVVSVV 319

Query: 196 ---ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSG 251
                 LR+ +E + INI  G  +HIT+S G++        +  ++  AD A+Y AK  G
Sbjct: 320 RRRGETLRQAVE-APINIK-GNEVHITVSIGVSLLPDDTNDVDDLLKHADTAMYRAKDDG 377

Query: 252 RNRVVCFSDIENNT 265
           RN +  F      +
Sbjct: 378 RNTLRFFVPEMQAS 391


>gi|289678149|ref|ZP_06499039.1| GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 509

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 12/192 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIV 132
           L L ++    L+    + + ++ L+  D L+GL N                   ++LS++
Sbjct: 312 LWLTWLLCRELRRRHRAEDALASLAATDGLTGLDNRRQLDEAMEIEWARAQRSGKQLSLL 371

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQE 191
             D+D+FK  N+  GH  GD+ +  ++  +      P   + R GGEEF      +    
Sbjct: 372 MIDVDHFKAFNERHGHQGGDEALRLIAQTISYCIRRPGDRIARYGGEEFVVVLPETDLPG 431

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKK 249
           A ++A  +RK  E+  +  ++     IT+S G+A       + +      AD+ALY AK 
Sbjct: 432 AMLIAEKIRKAAESLPLFRNAEH--PITVSIGVASEVVRQGDKLEAFFGVADKALYQAKD 489

Query: 250 SGRNRVVCFSDI 261
           +GRNRV   S +
Sbjct: 490 NGRNRVEYRSSV 501


>gi|161520744|ref|YP_001584171.1| diguanylate cyclase [Burkholderia multivorans ATCC 17616]
 gi|189353073|ref|YP_001948700.1| putative diguanylate cyclase [Burkholderia multivorans ATCC 17616]
 gi|160344794|gb|ABX17879.1| diguanylate cyclase [Burkholderia multivorans ATCC 17616]
 gi|189337095|dbj|BAG46164.1| putative diguanylate cyclase [Burkholderia multivorans ATCC 17616]
          Length = 514

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 9/185 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFF 134
             I    +    ++   I  L+R D L+GL N     + L     +        +++++ 
Sbjct: 319 AVIIVEDVTARRLTEQHIRHLARHDALTGLPNRHELHAELERMLSRPPRRPDTAVAVMYL 378

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND FGH  GD+++  ++++L           R+GG+EF  A   ++    + 
Sbjct: 379 DLDGFKAINDRFGHQAGDELLMQVAERLGRALRDGALAARIGGDEFVVAVDDTTMDACSR 438

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +A  L   I ++   +S G ++   IS GIA          +I +AD ALY AK +G+ R
Sbjct: 439 VAAQLIAQI-SAPYTLSIGETVRFGISIGIALDDGHGTPDELIRQADSALYDAKSAGKGR 497

Query: 255 VVCFS 259
              +S
Sbjct: 498 YRFYS 502


>gi|186471171|ref|YP_001862489.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia phymatum
           STM815]
 gi|184197480|gb|ACC75443.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia phymatum
           STM815]
          Length = 508

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 9/183 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFF 134
             I    + +   +  +I  L+  D L+GL N       L              +++++ 
Sbjct: 324 AVIIIEDVTQRRQTEAKILHLASHDSLTGLPNRRELRDRLEQILSVRARPQGGSVAMMYL 383

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FKQ+ND  GH  GD+V+  ++ +L  V      V RLGG+EFA  A  ++      
Sbjct: 384 DLDGFKQVNDRLGHCAGDEVLETVAARLSRVLRPGELVARLGGDEFAIIADHTTLPSVVA 443

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           LA  + + I     ++S+G ++ I  S GIA   + + +  +I RADQALY AK++GR  
Sbjct: 444 LAQRVIRDIA-LPYHLSTGEAVSIGTSVGIALAANDDSVDGLIRRADQALYSAKQAGRGT 502

Query: 255 VVC 257
              
Sbjct: 503 YRV 505


>gi|120598899|ref|YP_963473.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sp. W3-18-1]
 gi|120558992|gb|ABM24919.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. W3-18-1]
          Length = 1028

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 84/182 (46%), Gaps = 10/182 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDY 138
           + + + +L      + +++  D L+GL N    +        ++       ++ F D+D 
Sbjct: 567 TQADITQLKNHEAELDKVANYDALTGLPNRRLLLDRFKQAISRVNRDGRLCAVCFLDLDG 626

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND++GH VGD+++  + D L  +      + R+GG+EF A     SE E   +   
Sbjct: 627 FKAVNDHYGHDVGDQLLVAIVDNLSKIMREQDTLARVGGDEFVALFDICSEAECTQVLER 686

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           +   I+  Q  +    ++ ++ S G++           ++  AD A+Y+AK +G+N    
Sbjct: 687 MLCAID--QTVLIGDKNLRLSASIGVSLYPEDNVDPDILLRHADHAMYMAKAAGKNCFQM 744

Query: 258 FS 259
           F 
Sbjct: 745 FD 746


>gi|302129938|ref|ZP_07255928.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato NCPPB 1108]
          Length = 674

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
            S L+E       ++ ++  D L+ L N +  ++ L         + E+ +++F D+D F
Sbjct: 226 QSRLQERERISEELAYIAFHDELTALFNRAYLMNELADAFSNPDHHYERATVLFLDLDGF 285

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
           K +ND+ GH  GD+++  ++++L         + R+GG+EFA   +G  + + A  +A  
Sbjct: 286 KVVNDSMGHLAGDQLLKRVANRLQNCVRANDVLARIGGDEFAILLVGKDQPETAVKMAER 345

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           +   +  + I I  G  I I+ S GI            ++  AD A+Y AKK GR R   
Sbjct: 346 IVSQLHAA-IEI-EGQDIFISCSIGIVTAGEGHSKPEDLLRDADVAMYSAKKQGRGRWSL 403

Query: 258 FSDIENNTC 266
           F+       
Sbjct: 404 FNASMREAA 412


>gi|284921863|emb|CBG34938.1| cellulose synthesis regulatory protein (signal transduction
           protein) [Escherichia coli 042]
          Length = 564

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGASLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 542 LADRRLYLAKQAGRNRV-FASD 562


>gi|258619914|ref|ZP_05714955.1| GGDEF family protein [Vibrio mimicus VM573]
 gi|258587784|gb|EEW12492.1| GGDEF family protein [Vibrio mimicus VM573]
          Length = 323

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 72/264 (27%), Positives = 116/264 (43%), Gaps = 30/264 (11%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           +W C       F P  F I+ S  F+   +++  I              G+ Y  ++N  
Sbjct: 69  VWSC-------FVPILFYIFTSARFAFLTSSLFLILQ-----------SGIVYWQLQNEP 110

Query: 71  LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSY 125
           L+  S+ + L   YI   ++  ++    R     +  L+  D L+   N  +  +S   +
Sbjct: 111 LISWSVLLHLSFAYIGIWVVSHVYEQNRRKIENSLLYLASRDPLTSAHNRLSLTTSFQHF 170

Query: 126 NE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            +      LS++  D+DYFK IND FGH  GDKV+   +  L  V G    + R+GGEEF
Sbjct: 171 EQFNDQTTLSLLVIDLDYFKSINDQFGHDTGDKVLIETTRLLAQVVGDNN-LYRIGGEEF 229

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                  S ++A  +   LR II            + +TIS G+ E    + ++ ++  A
Sbjct: 230 CVTLFDQSLEQAERVCERLRAIISQHIFAFGD-KRVQVTISIGVCEYQPGDQLNDLLKFA 288

Query: 241 DQALYVAKKSGRNRVVCFSDIENN 264
           D  LY AKK+GRN+V  F   +  
Sbjct: 289 DIELYRAKKAGRNQVRLFKHAQTQ 312


>gi|268680858|ref|YP_003305289.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618889|gb|ACZ13254.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 961

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 11/186 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           ++ +E       +      D L+GL N +     L    +K       L ++F D+D FK
Sbjct: 516 ALEEENKKQKKLLMHQVEHDILTGLPNRNLLQDRLTQAIKKASRDGKVLGVMFVDVDKFK 575

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND+ GH  GD ++  ++ ++         V RL G+EF     G  +     +A  ++
Sbjct: 576 NINDSLGHDAGDMLLKTIAKRMQHSIRETDTVARLSGDEFIVLLDGCKDVNDIFVA--IK 633

Query: 201 KIIENSQ-INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           K+I   Q   I    S  +T+S G++      E  S ++  AD A+Y AK  GRNR + F
Sbjct: 634 KLINAFQEPFIFGNESFKVTMSIGVSVYPNDGELASKLLKNADIAMYKAKSQGRNRYIFF 693

Query: 259 SDIENN 264
               N 
Sbjct: 694 DQEMNQ 699


>gi|258405632|ref|YP_003198374.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfohalobium
           retbaense DSM 5692]
 gi|257797859|gb|ACV68796.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfohalobium
           retbaense DSM 5692]
          Length = 581

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 74/164 (45%), Gaps = 11/164 (6%)

Query: 101 SQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
              ++ D L+GL N                 Y++ LS +  D+D FK  ND FGH  GD+
Sbjct: 417 RHQAQTDYLTGLPNRRRLERDGFLQLTQAHRYDKDLSFMMIDLDDFKSFNDQFGHLYGDE 476

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  +++ L           R GGEEFA     +    A  +A  LR  +         G
Sbjct: 477 ALKAVAELLRSASRDADIPARWGGEEFALLLPETDLDGAREVAERLRARVATLDF----G 532

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               +T S G+A+   ++ +S +  RADQALY AK +GRN+V  
Sbjct: 533 MGRFVTASLGVAQARAEDDLSALQDRADQALYRAKMAGRNQVAA 576


>gi|187927489|ref|YP_001897976.1| diguanylate cyclase/phosphodiesterase [Ralstonia pickettii 12J]
 gi|309779809|ref|ZP_07674564.1| GGDEF domain protein [Ralstonia sp. 5_7_47FAA]
 gi|187724379|gb|ACD25544.1| diguanylate cyclase/phosphodiesterase [Ralstonia pickettii 12J]
 gi|308921386|gb|EFP67028.1| GGDEF domain protein [Ralstonia sp. 5_7_47FAA]
          Length = 685

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/280 (22%), Positives = 115/280 (41%), Gaps = 23/280 (8%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIA-NIFLFYIGLTPFYGLEY 63
           L   +++W+      +S          ++   + I  + +   +   F +G         
Sbjct: 151 LASGVALWIAFRLRRQSRRVRALRAGSAVVMGVAIVGMHYTGMSAAAFPLGSVCGAAHTG 210

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISY------------NRISQLSRIDCLSG 111
              E L+LVII +T+++L   +  S+L     +               ++ L+  D L+ 
Sbjct: 211 ASAEWLALVIIIVTLAVLAIALIISVLDLRMEARTALLANSLAAANKELAYLALHDNLTK 270

Query: 112 LLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           L N       L            + +++F D+D FK +ND +GH VGD ++  ++ ++  
Sbjct: 271 LSNRVLLEDRLTQAIRTAEREKHRFALMFMDLDGFKAVNDVYGHHVGDLLLIDVAQRIGA 330

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                  V R+GG+EF   A     ++A  LAN L +++   +  ++ G  + ++ S GI
Sbjct: 331 RVRQQDTVARVGGDEFVVLAYVDDPEDAGTLANALLEVVR--EPFMAGGHELRVSTSIGI 388

Query: 225 AERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           A           ++  AD A+Y AK  GRN    F    N
Sbjct: 389 AIYPGDGGNQHDLLTNADAAMYHAKGLGRNAYSFFEPSMN 428


>gi|330501334|ref|YP_004378203.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
 gi|328915620|gb|AEB56451.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
          Length = 1274

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 16/197 (8%)

Query: 81   LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVF 133
            LL   S + + E       I +L+  D L+GL N    +  L    ++        +++F
Sbjct: 820  LLIRASVTDISERQRYQREIERLAYSDELTGLPNRRLLLDRLQHAMDRENREGSLGALLF 879

Query: 134  FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA------LGS 187
             D+D+FK +ND+ GH VGD ++  ++ +L     T   + RLGG+EF            +
Sbjct: 880  IDLDHFKTVNDSLGHLVGDALLVEVTTRLARELRTEDTLARLGGDEFVVLLEALGSEPQA 939

Query: 188  SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYV 246
              + AA +   L + ++ S   +  G  + I+ S GIA      +  S I+ +AD A+Y 
Sbjct: 940  VAEHAAAVGEKLLRGLQGS--CLIDGHELAISASIGIALHPMGLQRASDILKQADTAMYR 997

Query: 247  AKKSGRNRVVCFSDIEN 263
            AK +GRN +  F+    
Sbjct: 998  AKHAGRNALHFFAPEMQ 1014


>gi|254788102|ref|YP_003075531.1| motility regulator [Teredinibacter turnerae T7901]
 gi|237685689|gb|ACR12953.1| motility regulator [Teredinibacter turnerae T7901]
          Length = 897

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 94/196 (47%), Gaps = 12/196 (6%)

Query: 81  LLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           +LG+++  + + E +I   R+  ++  D L+GL N   F   L            ++ ++
Sbjct: 440 ILGFLATFADITERYIHQERLRHVAEYDSLTGLANRYLFQDRLKQAFFNSEREGSEVVVM 499

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQE 191
           F D+D FK +ND+ GH VGDK++  + ++L+ +      V R GG+EF         + +
Sbjct: 500 FLDLDGFKIVNDSLGHAVGDKLLKKVGERLLNILRRVDTVARFGGDEFVILLNPHEKQLD 559

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKS 250
            A +A+ + + +   Q     G  I +T S GI+           ++ +AD ALY+AK  
Sbjct: 560 VAEVASKIIQSLA--QTYQIDGNEICVTSSIGISGGTAKNSSPEKLMKQADAALYLAKSE 617

Query: 251 GRNRVVCFSDIENNTC 266
           G+N    F++  +   
Sbjct: 618 GKNNFQLFNEALDKEA 633


>gi|149377394|ref|ZP_01895138.1| putative integral membrane sensor domain [Marinobacter algicola
           DG893]
 gi|149358318|gb|EDM46796.1| putative integral membrane sensor domain [Marinobacter algicola
           DG893]
          Length = 693

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 100/208 (48%), Gaps = 11/208 (5%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----- 118
           +++ +L++  I++ +S+L    +  +   L  + N + +L+  D L+ + N         
Sbjct: 220 VIIVSLAVFAIALIVSML-DVRTSRLSNSLDDANNELIKLALQDNLTRIPNRVLLGDRLE 278

Query: 119 --ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
             I      N + +++F D+D FK IND  GH VGD ++  ++++L++         RLG
Sbjct: 279 QAIHRAERNNSEFAVLFLDLDGFKAINDMHGHHVGDSLLKEVANRLLINKREGDTAARLG 338

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-T 235
           G+EF      SS + +A+ A  L   IE  Q   +S   +HI+ S GIA           
Sbjct: 339 GDEFVLLLEPSSPEISAVFAQRLIDSIE--QPYETSNIPLHISTSVGIAIYPQDGKTEHE 396

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDIEN 263
           ++  AD A+Y AKK GRN    F    N
Sbjct: 397 LMVNADAAMYHAKKQGRNGYCFFEHGMN 424


>gi|304311724|ref|YP_003811322.1| hypothetical protein HDN1F_20940 [gamma proteobacterium HdN1]
 gi|301797457|emb|CBL45677.1| Hypothetical protein HDN1F_20940 [gamma proteobacterium HdN1]
          Length = 670

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 93/199 (46%), Gaps = 17/199 (8%)

Query: 83  GYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFF 134
           G I+G I + +   +  +++  +  D L+ L N           I+         +++F 
Sbjct: 210 GAIAGIIDITQRRQAEQQLAWQANYDSLTSLPNRRFASELLEKEIARAKRRQHCGAVLFI 269

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND+ GHPVGD+++  + D+L     TP  V RLGG+EF         + A  
Sbjct: 270 DLDLFKNINDSLGHPVGDQLLIQVGDRLQKHLRTPDIVARLGGDEFIVILPELHSEIAQA 329

Query: 195 ------LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVA 247
                 +AN L+  I   Q    +   +++T S GIA     +E I  II +AD A+Y +
Sbjct: 330 KISAQHVANKLQAAI--GQEFQVNQHPLNMTCSIGIAIFPIEQETIHDIIRQADTAMYRS 387

Query: 248 KKSGRNRVVCFSDIENNTC 266
           K+ GRN V  F+       
Sbjct: 388 KRDGRNLVRFFTQELQQEA 406


>gi|170692779|ref|ZP_02883941.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M]
 gi|170142435|gb|EDT10601.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M]
          Length = 777

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 113/233 (48%), Gaps = 17/233 (7%)

Query: 36  SIFIATVIFIANIFLFY---IGLTPF--YGLEYILVENLSLVIISITISLLLGYISGSIL 90
            +++    F+    LFY   IGL P   +  +  +V  + +  I +  +++  +      
Sbjct: 126 PLWLTPTHFVVGSALFYAAAIGLLPSAPHTADVDVVVWMWIAAIGMPTAVVFHFGFYGFR 185

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQIND 144
           +  F+  ++++QL+  D L+GL N  AF++       +L+       +F DID FK +ND
Sbjct: 186 RNHFLLEDQLAQLAATDPLTGLQNRRAFVAQAERRLAELARGGEASAIFLDIDNFKSLND 245

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH VGD  +  ++  L+        V R+GGEEFA  +       A  LA  LR  I 
Sbjct: 246 RFGHAVGDLALRQVAQVLLEQTTRGDSVSRIGGEEFAVLSCD-GLAGALRLAERLRGAIA 304

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +      P  H+T S G+AE    E I  ++ RAD+AL  AK+SGRNRV  
Sbjct: 305 ALER-----PDGHLTASFGVAEHRGDENIMVLLDRADEALLRAKQSGRNRVCA 352


>gi|126654907|ref|ZP_01726441.1| sensory box protein, GGDEF family protein, LssE [Cyanothece sp.
           CCY0110]
 gi|126623642|gb|EAZ94346.1| sensory box protein, GGDEF family protein, LssE [Cyanothece sp.
           CCY0110]
          Length = 444

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 11/183 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
            S   + E   +   I   +  D L+ + N   F   L           + L+++F D+D
Sbjct: 263 FSFRDITEQKQAEAIIKHQALHDPLTNVANRIYFEERLCIALNQAQQTQKMLAVMFLDLD 322

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILA 196
           +FK+IND  GH +GDK++    + L         + RLGG+EF       + + + + +A
Sbjct: 323 HFKEINDTLGHGIGDKLLQRFVECLQQCVRDKDLICRLGGDEFLILLPDINHRTDVSAIA 382

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             +   +  +   +    ++HI+ S GIA    H +   T++ +AD ALY  K+ GRN  
Sbjct: 383 QRILTKL--TVPFVIENNTLHISSSIGIAIYPDHGQDTDTLVQKADVALYYVKQQGRNNY 440

Query: 256 VCF 258
             F
Sbjct: 441 HFF 443


>gi|189010637|ref|ZP_03006404.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4076]
 gi|189403615|ref|ZP_03007156.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4486]
 gi|189404557|ref|ZP_03007505.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4501]
 gi|208819162|ref|ZP_03259482.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4042]
 gi|217329047|ref|ZP_03445128.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. TW14588]
 gi|188999250|gb|EDU68236.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4076]
 gi|189359663|gb|EDU78082.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4486]
 gi|189364944|gb|EDU83360.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4501]
 gi|208739285|gb|EDZ86967.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4042]
 gi|217318394|gb|EEC26821.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. TW14588]
 gi|320191929|gb|EFW66576.1| hypothetical protein ECoD_01340 [Escherichia coli O157:H7 str.
           EC1212]
 gi|320641804|gb|EFX11192.1| putative diguanylate cyclase YedQ [Escherichia coli O157:H7 str.
           G5101]
 gi|326342366|gb|EGD66147.1| hypothetical protein ECoA_03441 [Escherichia coli O157:H7 str.
           1044]
 gi|326344870|gb|EGD68617.1| hypothetical protein ECF_01448 [Escherichia coli O157:H7 str. 1125]
          Length = 558

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 536 LADRRLYLAKQAGRNRV-FASD 556


>gi|145299889|ref|YP_001142730.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852661|gb|ABO90982.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 806

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 6/181 (3%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQI 142
             + +   S   + QL+  D L+ L N       L         + L+++F D+D+FK +
Sbjct: 460 RDISDRKASEEMMRQLAFYDPLTHLPNRRLLQDRLQHSLQQADGKPLALLFIDLDHFKPV 519

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD ++A ++ +++        V R+GG+EF       + +  AI   +    
Sbjct: 520 NDQHGHEAGDWLLATVAKRMLHCVREGDTVARIGGDEFMVLLPEITGEAGAIAIAEAIHQ 579

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             N    ++     HI+   G+A    H      ++   DQA+Y AK++GRNR+  F+  
Sbjct: 580 SLNQTFAMTDALHFHISSCIGVALYPQHGTTQKQLMNHGDQAMYQAKEAGRNRIQLFTPQ 639

Query: 262 E 262
            
Sbjct: 640 M 640


>gi|114775460|ref|ZP_01451028.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Mariprofundus ferrooxydans PV-1]
 gi|114553571|gb|EAU55952.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Mariprofundus ferrooxydans PV-1]
          Length = 1123

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 15/189 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFK 140
             +     +  ++  LS  D L+GL N   +                 +S++F D+D FK
Sbjct: 680 QDISSRKEAQEQLRLLSYSDELTGLPNRRLYSDRVEQACSMARRRKRPISLLFLDLDRFK 739

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH  GD V+  ++++L+          R+GG+EFA     +   +A  +A  L 
Sbjct: 740 LINDTRGHACGDMVLKTVANRLLQTLRVSDTAARMGGDEFAVLLPETEPDKALRVAGKLI 799

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR--VVC 257
             +  +Q  +     + I  S G+A      E   T++  AD A+Y AK+   NR  + C
Sbjct: 800 AAL--NQPILIGNQELIIGASIGLASFPADGEDGETLLKHADSAMYYAKQ---NRLNIHC 854

Query: 258 FSDIENNTC 266
           FS +     
Sbjct: 855 FSSVMEAVA 863


>gi|70732952|ref|YP_262723.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens
           Pf-5]
 gi|68347251|gb|AAY94857.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           fluorescens Pf-5]
          Length = 1241

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + +  L  +  R+   +  D L+GL N + F S L            + +++F D+D FK
Sbjct: 785 ADISSLKHAQARLDYQAHHDPLTGLPNRTLFESRLLSALNSQQDNGSQGAVLFLDLDRFK 844

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
            IND+ GHPVGD ++  ++ +L         V RLGG+EF     G  +  +A  +A  L
Sbjct: 845 HINDSLGHPVGDLLLKGIAVRLKEQLRDIDTVARLGGDEFIILLPGLHQASDADHIATKL 904

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 +    +      I+ S G +        ++T+I  AD A+Y +K  GRNRV  +
Sbjct: 905 LNCF--TAPFQAGEHEFFISASIGTSLYPKDGCDVATLIKNADAAMYRSKAKGRNRVERY 962

Query: 259 S 259
           +
Sbjct: 963 T 963


>gi|148547630|ref|YP_001267732.1| diguanylate cyclase [Pseudomonas putida F1]
 gi|148511688|gb|ABQ78548.1| diguanylate cyclase [Pseudomonas putida F1]
          Length = 381

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 67/261 (25%), Positives = 119/261 (45%), Gaps = 27/261 (10%)

Query: 25  HTFMIYFSIFFSI-FIATVIFIANIFLFYIGLTPFYGLEYILVENLSL------------ 71
            T ++ F++  S+  ++      N+ L  +GL       ++L++  +L            
Sbjct: 118 QTLIMLFAVGMSVSAVSCYSSYRNMTLVSMGLVLLPSTGWLLLQPSTLQQGIALAVLVFA 177

Query: 72  -VIISITISLLLGYISGSILKELFISYNRISQLSR-IDCLSGLLNHSAFISSLGSYNEK- 128
             ++S T SL     +   LK      +R++ ++   D L+GL N  AF  +  + + + 
Sbjct: 178 WFVVSATQSLSSALTTAWRLKHEMQRAHRLAMVASCTDELTGLNNRRAFFDNASAQHAQC 237

Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                 ++++  D+D+FKQIND FGH  GD+V+  +   +          GRLGGEEFA 
Sbjct: 238 RDAGKFMAVLMLDVDHFKQINDTFGHAAGDQVLQRIGAAISASLRDNDIAGRLGGEEFAI 297

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRAD 241
               +    A  +A  LR +I   ++N        +T S G+A  +     +  ++  AD
Sbjct: 298 LLPNTPPDTAIEVAERLRALIAKLRVN----DEHPVTASIGLAFAKAPATELGALLSSAD 353

Query: 242 QALYVAKKSGRNRVVCFSDIE 262
            A+Y++K SGRNRV      +
Sbjct: 354 SAMYLSKVSGRNRVTVAEPEQ 374


>gi|330970885|gb|EGH70951.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 424

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 118/285 (41%), Gaps = 36/285 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL------FYIG 54
           + +S    L +WL   +         +M    + +++F+ +   +   +L          
Sbjct: 133 LEQSYPVELQVWLADIR--WPVLHGAWMSLIQLSYAMFLVSFGVLIWQYLEKPRPLHAAQ 190

Query: 55  LTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           +    GL + L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL 
Sbjct: 191 IVGLLGLLWALPKTFILPFTLNILCSQVMLMIAAAVAHEAY-------QMAFRDELTGLP 243

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A    +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        
Sbjct: 244 GRRALNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAY 303

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------------------- 214
           R GGEEFA      S  E       +R+ I + +I + +                     
Sbjct: 304 RYGGEEFAIVFAAKSIDECMPHLEAIRETIASYEIQLRNKDNRPQDDQQGRQRRSGAQAG 363

Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S+ +T+S G+AER         ++  ADQALY AK +GRN VV +
Sbjct: 364 SVSVTVSIGVAERQPEHRTPEEVLKSADQALYAAKGAGRNCVVAY 408


>gi|300312078|ref|YP_003776170.1| hypothetical protein Hsero_2767 [Herbaspirillum seropedicae SmR1]
 gi|300074863|gb|ADJ64262.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 534

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 18/186 (9%)

Query: 91  KELFISYNRIS----------QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVF 133
           +E+  +  RI           +L R D L+G LN      SL          +  L +  
Sbjct: 341 QEVEKAEERIQTLEQQLLQMGELVREDQLTGSLNRRGMDESLDREITNALRRDTPLCVAL 400

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK+IND  GH  GD+V+  +   +         + R GGEEF      ++ Q+A 
Sbjct: 401 LDLDDFKRINDTHGHATGDEVLVHMVQVIRETLRKLDVIARFGGEEFLVLMPETAPQDAV 460

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +   +++ +   +I +     + IT SAG+A     E  + ++ RAD ALY AK +G+N
Sbjct: 461 QIITRVQREL-TKRIFMHESQRLLITFSAGVAVYHPGESQADLLKRADVALYKAKNAGKN 519

Query: 254 RVVCFS 259
           R+V   
Sbjct: 520 RIVFAD 525


>gi|218699484|ref|YP_002407113.1| putative diguanylate cyclase [Escherichia coli IAI39]
 gi|218369470|emb|CAR17235.1| putative diguanylate cyclase [Escherichia coli IAI39]
          Length = 564

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LLL  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTSMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G++  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 542 LADRRLYLAKQAGRNRV-FASD 562


>gi|218442025|ref|YP_002380354.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7424]
 gi|218174753|gb|ACK73486.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7424]
          Length = 897

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 12/184 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQ 141
           + +  ++  ++   +  D L+GL N +  +  L        G +    +++F D+D FK 
Sbjct: 451 ITQRKLAEAQLRHDALHDSLTGLPNRALLMDRLTQAINREKGRFYTHFAVLFLDVDRFKL 510

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLR 200
           +ND+ GH VGD+++   ++ L  +      + RLGG+EF       SE  +A  +A  + 
Sbjct: 511 LNDSLGHLVGDQLLISFANCLKKIRRFTDTIARLGGDEFVILLEDLSEVGQAIKVAQRIN 570

Query: 201 KIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +I+ +S   +     I IT S GIA      E  S I+  AD A+Y AK +GR +   F 
Sbjct: 571 EILSSS--FLIDDQEIFITASIGIAFSNSSYEHPSQILRDADTAMYYAKNNGRGKYQVFD 628

Query: 260 DIEN 263
              +
Sbjct: 629 SSMH 632


>gi|144901030|emb|CAM77894.1| Two-component sensory box protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 828

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           S +        R+S  +  D L+ L N + F   L     +       ++++F D+D FK
Sbjct: 375 SDITTRKQVEERLSYAANHDPLTRLPNRTLFQERLTRAIARASRNHNLVALLFIDLDRFK 434

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
           Q+ND  GH  GD ++  ++++L         V RL G+EF          ++AA++ + +
Sbjct: 435 QVNDTMGHLAGDMLLQQVAERLSSCIRQGDTVARLSGDEFTIILEDVQDPRDAAVVGHKV 494

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            ++++  +    +G   HI+ S G++          T++  AD A+Y AK  GRN     
Sbjct: 495 LRLLQ--EPVALTGGEAHISSSIGVSLYPTDAGDPQTLLKLADAAMYRAKHLGRNSCQFH 552

Query: 259 SDIENNTC 266
           S+  N   
Sbjct: 553 SEAVNAEA 560


>gi|15891865|ref|NP_357537.1| GGDEF family protein [Agrobacterium tumefaciens str. C58]
 gi|15160355|gb|AAK90322.1| GGDEF family protein [Agrobacterium tumefaciens str. C58]
          Length = 589

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 4/167 (2%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHP 149
                R+  ++R D L+GLLN  +   +L  + EK    L+ +  DID+FK+ ND FGH 
Sbjct: 418 LQLRQRLVGMARQDALTGLLNRRSLDEALNRHIEKPTGSLACLMLDIDHFKRFNDRFGHD 477

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+ +++  L         + R GGEEF      +  ++A  LA  LR  +E +   
Sbjct: 478 AGDAVMQYVAQVLSEATSDQGTLFRFGGEEFTVLMPDAGIEDATKLAEKLRHAVERAPFT 537

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                   +TIS GIA       +S+++ RAD AL  AK++GRN+ V
Sbjct: 538 YRGRLLDPVTISIGIATAPGAGTVSSVLERADAALLSAKQTGRNKWV 584


>gi|52145223|ref|YP_086680.1| hypothetical protein BCZK5111 [Bacillus cereus E33L]
 gi|51978692|gb|AAU20242.1| conserved hypothetical protein, GGDEF domain in C-terminal region
           [Bacillus cereus E33L]
          Length = 351

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 12/227 (5%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           S+F   + F  N++  +I   P   L   +   ++L ++  +++  + +IS + + +   
Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLSMLFKDM-SIVALYLVCSSVAAYITFISANYVLQSNE 182

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
            + ++ Q + ID L+GL N   F   +  +       N+ L ++  DID+FK +ND +GH
Sbjct: 183 LFQKMKQYATIDALTGLGNVRQFDLEMNHHICNKRMKNDSLCLLLIDIDHFKSVNDTYGH 242

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           P GD+V+  +   L  V   P    R GGEEFA             +   +R  +E    
Sbjct: 243 PAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAAVEKHSF 302

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  G  I IT+S GI+    ++     I  AD ALY +K++GRN+V
Sbjct: 303 QLLDGTKIKITVSVGISVY--EQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|83594095|ref|YP_427847.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodospirillum rubrum ATCC 11170]
 gi|83577009|gb|ABC23560.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodospirillum rubrum ATCC 11170]
          Length = 820

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 92/182 (50%), Gaps = 10/182 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYF 139
           + + +     +R++ L++ D L+GL+N  +F   L     +        ++++  D+D F
Sbjct: 360 ADVTDRKAMIDRLTFLAQRDPLTGLINRRSFFDDLEKAVARAGRFPAAGVAVISIDLDRF 419

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND+ GH  GD ++  +++ L         + RLGG+EFA    G + + A  +A  L
Sbjct: 420 KYVNDSLGHQAGDCLLKEVAEVLFGRLRETDLLARLGGDEFAVLLHGVNREGALHVAEAL 479

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           R  + +   +   G S+ I  S G+A      +    ++ RAD A+ +AK++GRNRV  F
Sbjct: 480 RLCLADYAFSY-DGKSVEIGCSLGVATWAADVDDPEDLLARADMAMRLAKRAGRNRVHLF 538

Query: 259 SD 260
            +
Sbjct: 539 EE 540


>gi|251789553|ref|YP_003004274.1| PAS/PAC and GAF sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Dickeya zeae Ech1591]
 gi|247538174|gb|ACT06795.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Dickeya zeae Ech1591]
          Length = 722

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 17/236 (7%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSL----VIISITISLLLGY------ISGS 88
           I   +F+  +       T  +    I +E  +L    +   +T+S+   +      I   
Sbjct: 221 IVPDMFVVQLHHLATDKTAIFKGSSIELETRALPGTMIPTELTVSMWHDHNQTRYGIILR 280

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDN 145
              E      R+   +  D L+GL N +   S+L       E  +I+  D+D FK IND+
Sbjct: 281 DTTERQRYEERLFLQAHRDPLTGLANRTLLTSTLDQVLKNGEPAAIMIIDLDGFKDINDS 340

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIE 204
            GH  GD++++ +S +L     +   V R+GG+EFA      + ++  A LA  +   I 
Sbjct: 341 LGHASGDEILSSVSRRLQDNVQSGDLVARMGGDEFAILLPKQNDKERVAKLAEKIIHDI- 399

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            SQ  +     I+ + S G+     H   +  ++  AD ALY AK  GRN    F+
Sbjct: 400 -SQAVLVDNKQINTSASIGLVMYPTHGTTVQDLLTSADLALYQAKADGRNCYRFFT 454


>gi|238787036|ref|ZP_04630836.1| hypothetical protein yfred0001_5190 [Yersinia frederiksenii ATCC
           33641]
 gi|238724824|gb|EEQ16464.1| hypothetical protein yfred0001_5190 [Yersinia frederiksenii ATCC
           33641]
          Length = 572

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 13/177 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           +L  +  R+   +R D L+ L N   F                 LS++  DIDYFK  ND
Sbjct: 389 KLIKANRRLEIQARTDSLTKLPNRREFKKVLAHEFMRAKRSGSPLSVLMIDIDYFKNFND 448

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  L      +   V R GGEEFAA    + ++ A+++A  + + I
Sbjct: 449 CYGHISGDACLRLVARALRKSLKRSTDIVARYGGEEFAAILPDTDQKGASLVAEHILQSI 508

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-----PISTIIYRADQALYVAKKSGRNRV 255
               I  S      +TIS G+      +       + ++  ADQALY +KK+GRN+ 
Sbjct: 509 RAMGIKHSDSKFRKVTISLGVTVYQAHQHTTITDQADLMLTADQALYYSKKNGRNQF 565


>gi|187920208|ref|YP_001889239.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
 gi|187718646|gb|ACD19869.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
          Length = 493

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 58/198 (29%), Positives = 99/198 (50%), Gaps = 12/198 (6%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           +S   I I   +++  ++ + L+E   +   +++L++ D L+G+ N  A    L +  E+
Sbjct: 296 VSTATIGIAFCVVVWLLAFA-LREHVKTQVLLTELTQTDPLTGVRNRRALDEFLENEWER 354

Query: 129 L-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEF 180
           L       S++F D D+FKQ ND++GH  GD  +  L+  +            R GGEEF
Sbjct: 355 LRRNESCLSVLFIDADHFKQYNDSYGHAQGDLALKHLAACIRRHACRRGDLTARYGGEEF 414

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIY 238
                 + E  A  +A  +R  +E+  I++S   +   T+S G A   R +   ++ +  
Sbjct: 415 VVVLPDTDETGAMQVAEAIRHEVESGPIHLSESLA-RFTVSIGCATGRRAYPRSLAELTN 473

Query: 239 RADQALYVAKKSGRNRVV 256
           +AD ALY AK+ GRN VV
Sbjct: 474 KADSALYAAKRGGRNAVV 491


>gi|170769350|ref|ZP_02903803.1| diguanylate cyclase domain protein [Escherichia albertii TW07627]
 gi|170121674|gb|EDS90605.1| diguanylate cyclase domain protein [Escherichia albertii TW07627]
          Length = 564

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/199 (27%), Positives = 95/199 (47%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +F+  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTTMLLISWYVIRRMVSNMFVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    SI+  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LCQTHKHPFSIIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISHSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G++  +A  +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVVLPGTNLAQAKDVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 542 LADRRLYLAKQAGRNRVCA 560


>gi|167583687|ref|ZP_02376075.1| diguanylate cyclase (GGDEF domain) [Burkholderia ubonensis Bu]
          Length = 315

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/203 (28%), Positives = 96/203 (47%), Gaps = 11/203 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           L     +  + +TIS +       + +E   +  ++ + +  D L+G+ N   F   L  
Sbjct: 116 LTRGREVEAVCVTISDVTH--VSVMQREREEAVAKLREHANCDGLTGIANRRFFEERLRD 173

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y   LS++ FD+D+FK IND FGH VGD V+  ++ ++  +        R GG
Sbjct: 174 EFARWQRYGGNLSVLLFDLDHFKTINDRFGHAVGDAVLREMALRVAGIVRAQDTFCRFGG 233

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STI 236
           EEFA     +   EA ++A  +R  I  + ++ + G  + +T S G A           +
Sbjct: 234 EEFALLLPCTDLAEAMLVAEKVRCAIGVTPVD-AEGVRVPVTASVGGASAHAGAQACDVL 292

Query: 237 IYRADQALYVAKKSGRNRVVCFS 259
           +  AD ALY AK+ GR+R V ++
Sbjct: 293 VNEADAALYRAKRLGRDRSVAYA 315


>gi|160897442|ref|YP_001563024.1| diguanylate cyclase [Delftia acidovorans SPH-1]
 gi|160363026|gb|ABX34639.1| diguanylate cyclase [Delftia acidovorans SPH-1]
          Length = 612

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 8/176 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQI 142
            +  L          +  D L+GL N  A  + L     +      L++ F D+D FKQ+
Sbjct: 435 DIDALKRGEQAAQHQAMHDVLTGLANRRALQARLQRALAQASGPGQLAVCFMDLDGFKQV 494

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRK 201
           ND  GH  GD+V+  ++ +L         V RLGG+EF       +S  +A  +      
Sbjct: 495 NDTEGHDAGDEVLRIIARRLTTQARETDCVARLGGDEFVLLLDELASADDALQIMQRCLA 554

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I    I + SG ++ +  S GIA    +E  + ++ RAD+A+Y AK++G+ R+V 
Sbjct: 555 SIRQ-PIRLHSGATVQVGASMGIALNASREDATQLLQRADEAMYAAKRAGKGRIVV 609


>gi|187919786|ref|YP_001888817.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
 gi|187718224|gb|ACD19447.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
          Length = 503

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 58/203 (28%), Positives = 94/203 (46%), Gaps = 13/203 (6%)

Query: 67  ENLSLVIISITISLLLGY---ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
             L L I+    S++LG    +    L+    + +++  L+R D L+GL N   F  +L 
Sbjct: 299 RALRLEIVMAVFSIILGAGSLLLSRELRRRQRAESKLQHLARTDALTGLSNRGTFDDTLQ 358

Query: 124 -------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRL 175
                       LS++F DID FK  ND +GH  GD+V+  ++  + + V  +   V R 
Sbjct: 359 KEWQRANRSGRPLSLLFIDIDQFKAYNDYYGHQAGDEVLRAVAQCVGLCVLRSADQVARY 418

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPI 233
           GGEEF      +    A  +A  +R+ + +  +         +T+S G+           
Sbjct: 419 GGEEFVVTLPDTDATGATNVAETVRRAVFDLNLEHVQSRYGRVTVSIGLVTSDERVARDG 478

Query: 234 STIIYRADQALYVAKKSGRNRVV 256
           +T++  AD ALY AK +GRNRV 
Sbjct: 479 ATLVNMADSALYEAKSTGRNRVC 501


>gi|103485959|ref|YP_615520.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingopyxis alaskensis RB2256]
 gi|98976036|gb|ABF52187.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingopyxis alaskensis RB2256]
          Length = 878

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 11/190 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           SG+ L +   S   I+QL+R D L+GL N       L           +  +++  D+D 
Sbjct: 329 SGTDLTDQKRSEREINQLARYDTLTGLANRRHITDLLERALRTHIGQPQPCALLLMDLDR 388

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK +ND  GHPVGD+++  ++ +L  + G    VGRLGG+EF       +  ++ A +AN
Sbjct: 389 FKAVNDTLGHPVGDQLLQQVAGRLTQIVGDKGQVGRLGGDEFQIVLPQLNHPEKIAGIAN 448

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  I+  ++     G  + I  S GIA         S ++  AD ALY AK +GR    
Sbjct: 449 AI--ILSLAKPFAIEGEQVRIGSSIGIAVSDGEGVSASALVRNADLALYAAKDAGRGVYR 506

Query: 257 CFSDIENNTC 266
            ++D  +N  
Sbjct: 507 FYADAMHNQA 516


>gi|331015153|gb|EGH95209.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 674

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
            S L+E       ++ ++  D L+ L N +  ++ L         + E+ +++F D+D F
Sbjct: 226 QSRLQERERISEELAYIAFHDELTALFNRAYLMNELADAFSNPDHHYERATVLFLDLDGF 285

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
           K +ND+ GH  GD+++  ++++L         + R+GG+EFA   +G  + + A  +A  
Sbjct: 286 KVVNDSMGHLAGDQLLKRVANRLQNCVRANDVLARIGGDEFAILLVGKDQPETAVKMAER 345

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           +   +  + I I  G  I I+ S GI            ++  AD A+Y AKK GR R   
Sbjct: 346 IVSQLHAA-IEI-EGQDIFISCSIGIVTAGEGHSKPEDLLRDADVAMYSAKKQGRGRWSL 403

Query: 258 FSDIENNTC 266
           F+       
Sbjct: 404 FNASMREAA 412


>gi|261251533|ref|ZP_05944107.1| hypothetical protein VIA_001554 [Vibrio orientalis CIP 102891]
 gi|260938406|gb|EEX94394.1| hypothetical protein VIA_001554 [Vibrio orientalis CIP 102891]
          Length = 608

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 61/183 (33%), Positives = 90/183 (49%), Gaps = 3/183 (1%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI--VFF 134
            I+LL+  +S  +L        +  QLS  D L+GL N         +  ++L +  +  
Sbjct: 425 AITLLILILSFGLLYHQRKRKQQFYQLSNTDFLTGLSNRRHIFEWGEAQFDRLKLSSIML 484

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK +ND +GH  GD+V+  +S  +     +   VGR+GGEEF       S  + + 
Sbjct: 485 DIDHFKTLNDTYGHDFGDEVLKTVSSIVTKAARSADVVGRIGGEEFLILLPNVSRHQLSH 544

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           LA D+R+ I   +        I +T S GI E      +S  +  AD ALY AK+SGRNR
Sbjct: 545 LAEDIRQKIAQHRFTTPDHKEIQVTASFGITEHRSG-SLSNQVNLADTALYNAKRSGRNR 603

Query: 255 VVC 257
            V 
Sbjct: 604 SVF 606


>gi|254253798|ref|ZP_04947115.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124898443|gb|EAY70286.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 363

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 11/176 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+GL N       L +   +       L+++  D+D FKQ N
Sbjct: 170 QQLLEANLELRRLTHSDGLTGLSNRRYLDEYLAAEWRRGSRERGELALLMIDVDNFKQYN 229

Query: 144 DNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD ++  ++  L      +     R GGEEFA     SS   A +LA  +R  
Sbjct: 230 DTYGHVAGDGLLRQIAATLERCVGRSGALAARFGGEEFAVVMPASSASAARLLAEKIRLA 289

Query: 203 IENSQINI-SSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E  ++    + P  ++T+S G A        P + +I  AD+ALY AK  G+NRV
Sbjct: 290 VEALRLEHAHASPGRYVTVSIGGASIVPTPDVPPTALIEAADRALYRAKHEGKNRV 345


>gi|117918832|ref|YP_868024.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sp. ANA-3]
 gi|117611164|gb|ABK46618.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sp. ANA-3]
          Length = 876

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 21/198 (10%)

Query: 79  SLLLGYISGSILKELFISYN---RISQLSRIDCLSGLLNHSAFISSLGSYN--------E 127
           +  L  ++  + KE+    N   ++   ++ D L+GL N + F+  L            E
Sbjct: 424 TTALAELNKDLEKEIRQRRNMEAKLVHDAKHDALTGLPNRAMFMERLNQAIKHVRRHSLE 483

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           + +++F D+D FKQIND  GH  GD+ +   + +L     +   + RLGG+EF       
Sbjct: 484 QFALLFIDLDRFKQINDTMGHLEGDRFLIETATRLRACIRSNDTLARLGGDEFVILLDSI 543

Query: 188 S-EQEAAILANDLRKIIENS----QINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
           +   +A  +A  + + I  S     I   SG SI ITIS         +   +++  AD 
Sbjct: 544 NGINDARDVAERVIQKISLSYTLGAIEFHSGASIGITIS-----GNKLDTSESMLRNADT 598

Query: 243 ALYVAKKSGRNRVVCFSD 260
           A+Y AK +G+   V F D
Sbjct: 599 AMYQAKANGKGCYVIFDD 616


>gi|30264120|ref|NP_846497.1| sensory box/GGDEF family protein, putative [Bacillus anthracis str.
           Ames]
 gi|42783158|ref|NP_980405.1| sensory box/GGDEF family protein, putative [Bacillus cereus ATCC
           10987]
 gi|47529556|ref|YP_020905.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|65321436|ref|ZP_00394395.1| COG2199: FOG: GGDEF domain [Bacillus anthracis str. A2012]
 gi|165871160|ref|ZP_02215810.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0488]
 gi|167639495|ref|ZP_02397766.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0193]
 gi|170687199|ref|ZP_02878417.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0465]
 gi|170705667|ref|ZP_02896130.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0389]
 gi|190565880|ref|ZP_03018799.1| putative sensory box/GGDEF family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|196034843|ref|ZP_03102250.1| putative sensory box/GGDEF family protein [Bacillus cereus W]
 gi|206977366|ref|ZP_03238262.1| putative sensory box/GGDEF family protein [Bacillus cereus
           H3081.97]
 gi|217961536|ref|YP_002340106.1| putative sensory box/GGDEF family protein [Bacillus cereus AH187]
 gi|222097494|ref|YP_002531551.1| sensory box/ggdef family protein, putative [Bacillus cereus Q1]
 gi|227816822|ref|YP_002816831.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           CDC 684]
 gi|228916684|ref|ZP_04080249.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929093|ref|ZP_04092120.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935364|ref|ZP_04098184.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229123567|ref|ZP_04252762.1| Sensory box/GGDEF family protein [Bacillus cereus 95/8201]
 gi|229140780|ref|ZP_04269325.1| Sensory box/GGDEF family protein [Bacillus cereus BDRD-ST26]
 gi|229198168|ref|ZP_04324877.1| Sensory box/GGDEF family protein [Bacillus cereus m1293]
 gi|229604454|ref|YP_002868344.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0248]
 gi|254683812|ref|ZP_05147672.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721647|ref|ZP_05183436.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A1055]
 gi|254736158|ref|ZP_05193864.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           Western North America USA6153]
 gi|254744048|ref|ZP_05201731.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           Kruger B]
 gi|254754173|ref|ZP_05206208.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           Vollum]
 gi|254758137|ref|ZP_05210164.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           Australia 94]
 gi|301055541|ref|YP_003793752.1| putative sensory box/GGDEF family protein [Bacillus anthracis CI]
 gi|30258765|gb|AAP27983.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           Ames]
 gi|42739086|gb|AAS43013.1| sensory box/GGDEF family protein, putative [Bacillus cereus ATCC
           10987]
 gi|47504704|gb|AAT33380.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           'Ames Ancestor']
 gi|164713079|gb|EDR18606.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0488]
 gi|167512554|gb|EDR87929.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0193]
 gi|170129207|gb|EDS98071.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0389]
 gi|170668816|gb|EDT19561.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0465]
 gi|190562799|gb|EDV16765.1| putative sensory box/GGDEF family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|195992382|gb|EDX56343.1| putative sensory box/GGDEF family protein [Bacillus cereus W]
 gi|206744357|gb|EDZ55768.1| putative sensory box/GGDEF family protein [Bacillus cereus
           H3081.97]
 gi|217066991|gb|ACJ81241.1| putative sensory box/GGDEF family protein [Bacillus cereus AH187]
 gi|221241552|gb|ACM14262.1| sensory box/GGDEF family protein, putative [Bacillus cereus Q1]
 gi|227006187|gb|ACP15930.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           CDC 684]
 gi|228585328|gb|EEK43437.1| Sensory box/GGDEF family protein [Bacillus cereus m1293]
 gi|228642570|gb|EEK98856.1| Sensory box/GGDEF family protein [Bacillus cereus BDRD-ST26]
 gi|228659702|gb|EEL15347.1| Sensory box/GGDEF family protein [Bacillus cereus 95/8201]
 gi|228824292|gb|EEM70104.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830383|gb|EEM75993.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842871|gb|EEM87954.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268862|gb|ACQ50499.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0248]
 gi|300377710|gb|ADK06614.1| possible sensory box/GGDEF family protein [Bacillus cereus biovar
           anthracis str. CI]
 gi|324327950|gb|ADY23210.1| putative sensory box/GGDEF family protein [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 430

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          NE ++++ FDID FK +
Sbjct: 254 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAV 313

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 314 NDTYGHDFGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 373

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q +  S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 374 IETKQFSGIS----KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCVY 425


>gi|327396404|dbj|BAK13826.1| diguanylate cyclase YddV [Pantoea ananatis AJ13355]
          Length = 365

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 128/279 (45%), Gaps = 30/279 (10%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL------FYIGLTPFYGL 61
              +W  H +    +  H+ +I    F  + +  V FI+ I L      F + +TP    
Sbjct: 80  LGGLWAWHIQ----YRYHSVLIDDGGFLIVSLLCVFFISAIALSDYLVAFCLHITPSMLT 135

Query: 62  EYILVENLSLVIISITISL-LLGY------------ISGSILKELFISYNRISQLSRIDC 108
             +L     L +I +TI+L L+G+             +  ++ +L+      S LS +D 
Sbjct: 136 VLMLDHGQHLPLILLTIALPLIGFSLQHLMRRRSEDFTLRLMYQLYEEKESFSDLSMLDP 195

Query: 109 LSGLLNHSAFISSLGS----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           L+GL N     + L +    +     ++  DID+FK  NDN+GH +GD+ +A +S  +  
Sbjct: 196 LTGLYNRRGLKNRLDNILDNHVGSHYVLLLDIDHFKAYNDNYGHAMGDQALARVSVAIRD 255

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISA 222
              +   V R GGEEF       +   A  LA  +R+ + N +I       +  H+TISA
Sbjct: 256 AVRSRDVVTRYGGEEFLVLMTNVNASIAMKLAERIRQYVVNLEIPHLFNERVSTHVTISA 315

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           GIA   +       +  AD+ALYVAK  GRN ++ + D+
Sbjct: 316 GIA-PIYDNEFDQAVANADRALYVAKNRGRNTILAWEDL 353


>gi|260855930|ref|YP_003229821.1| putative diguanylate cyclase [Escherichia coli O26:H11 str. 11368]
 gi|257754579|dbj|BAI26081.1| predicted diguanylate cyclase [Escherichia coli O26:H11 str. 11368]
          Length = 564

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLHWQAWHDTLTRLYNRGALFEKARPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGASLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 542 LADRRLYLAKQAGRNRV-FASD 562


>gi|256822607|ref|YP_003146570.1| diguanylate cyclase [Kangiella koreensis DSM 16069]
 gi|256796146|gb|ACV26802.1| diguanylate cyclase [Kangiella koreensis DSM 16069]
          Length = 486

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 102/230 (44%), Gaps = 9/230 (3%)

Query: 39  IATVIFIANIFLFYIGLTPFYGL-EYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           I+T+ FI  I   +  L PF  L +      L     +  I++    +    ++    S 
Sbjct: 256 ISTLAFIGLISATHFNLGPFVSLTDQATAFELMAFTFACAITVFGLALQQYQMRLAKESG 315

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
            R    +  D L+GL N  AF+ +L   + +         ++ +DID FK+IND++GH  
Sbjct: 316 ERWKLAAEHDVLTGLPNRRAFMPALTKEHHRSVRLGHNYCVIIWDIDDFKRINDSYGHDF 375

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  L+  + +      +  R+GGEEFA     +  +         R+ + +     
Sbjct: 376 GDRVLVRLAQIMRISCRDIDYYARIGGEEFAVLLPETDRESGEKAMERFRQEVADETFAA 435

Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             G    +TIS G+A    +    S ++  AD+ALY +K  G+N+   + 
Sbjct: 436 PDGTIHSVTISIGLASLDARVVDESELLAEADKALYQSKAQGKNQTNSYE 485


>gi|168206786|ref|ZP_02632791.1| GGDEF/HD domain protein [Clostridium perfringens E str. JGS1987]
 gi|168217696|ref|ZP_02643321.1| GGDEF/HD domain protein [Clostridium perfringens NCTC 8239]
 gi|170661812|gb|EDT14495.1| GGDEF/HD domain protein [Clostridium perfringens E str. JGS1987]
 gi|182380275|gb|EDT77754.1| GGDEF/HD domain protein [Clostridium perfringens NCTC 8239]
          Length = 563

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/195 (32%), Positives = 92/195 (47%), Gaps = 9/195 (4%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------Y 125
           +I   + +L  +  G  +K        +  L   D L+G+ NH  F   L          
Sbjct: 162 LILAGVFVLTAWTLGFYVKTENDHIKELQTLVNEDGLTGVYNHRYFYDKLREKMHISEVE 221

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           NEKLS++F DIDYFK  ND +GH  GD+ +  +   L  +      V R GGEEFA    
Sbjct: 222 NEKLSLIFMDIDYFKHYNDLYGHQKGDEALKKIGKLLKNIARENDLVARYGGEEFAIILP 281

Query: 186 GSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERCHKEPIS-TIIYRADQA 243
            +SE+EA  +A  +R  +E +      + P+ + T+S GIA    K      ++  AD A
Sbjct: 282 NTSEEEATKIAERIRNKVEKTYFEGQENQPNANFTVSVGIAVFPDKAKSELELVKCADDA 341

Query: 244 LYVAKKSGRNRVVCF 258
           LY AK   +NRV  +
Sbjct: 342 LYRAKFFHKNRVETY 356


>gi|166712658|ref|ZP_02243865.1| putative sensor protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 551

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/193 (31%), Positives = 90/193 (46%), Gaps = 11/193 (5%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SY 125
           + S+T++          L  L +    + Q S  D L+GL N      SL          
Sbjct: 352 LASLTVAEAAAEQLSLALHNLRL-RETLRQQSIRDPLTGLYNRRYLEESLNHELVRCTRR 410

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              LS++  D+D+FKQ ND  GH  GD+V++ + + L+          R GGEE      
Sbjct: 411 GLPLSVLMLDVDHFKQFNDLHGHSGGDRVLSAIGELLLSQTRGEDICCRYGGEELTIILP 470

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERC-HKEPISTIIYRADQA 243
                 A ++A  LR  IE  Q+ +  G S+  +T S G A    H   ++ ++ RAD+A
Sbjct: 471 EVDLPTACMMAEKLRAGIEALQV-MGDGVSLPKVTASFGAASFPDHAGTVAQLLRRADEA 529

Query: 244 LYVAKKSGRNRVV 256
           LY AK+ GRN+VV
Sbjct: 530 LYRAKQVGRNQVV 542


>gi|71907293|ref|YP_284880.1| diguanylate cyclase with PAS/PAC sensor [Dechloromonas aromatica
           RCB]
 gi|71846914|gb|AAZ46410.1| diguanylate cyclase with PAS/PAC sensor [Dechloromonas aromatica
           RCB]
          Length = 820

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 52/171 (30%), Positives = 74/171 (43%), Gaps = 12/171 (7%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L ++   + +L+  D L+ L N  A    L               +   DID+FK IND 
Sbjct: 652 LLMANQELERLAHQDALTKLPNRLAANERLRQEFLRLKRTGSPYCVFMMDIDHFKMINDT 711

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD V+   +  L        FV R GGEEF A    +  + A + A  +R  I  
Sbjct: 712 YGHETGDHVLEHFAVTLTGALRATDFVARFGGEEFIALMPDTEIEGAMVAAEKVRIAIHQ 771

Query: 206 SQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  +       +T+S G+   R         + RAD ALY +KK GRNRV
Sbjct: 772 EKFPVVG----CVTVSIGVGNSRTEDANEDETVRRADAALYRSKKDGRNRV 818


>gi|47565926|ref|ZP_00236965.1| sensory box/GGDEF family protein [Bacillus cereus G9241]
 gi|47557206|gb|EAL15535.1| sensory box/GGDEF family protein [Bacillus cereus G9241]
          Length = 430

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          NE ++++ FDID FK +
Sbjct: 254 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAV 313

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 314 NDTYGHDFGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 373

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q +  S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 374 IETKQFSGIS----KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCVY 425


>gi|302338207|ref|YP_003803413.1| response regulator receiver modulated diguanylate cyclase
           [Spirochaeta smaragdinae DSM 11293]
 gi|301635392|gb|ADK80819.1| response regulator receiver modulated diguanylate cyclase
           [Spirochaeta smaragdinae DSM 11293]
          Length = 342

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/176 (35%), Positives = 87/176 (49%), Gaps = 8/176 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           I +EL  S  R+ +++R D LSGLLN  +        I         LS +  D+D+FK 
Sbjct: 166 INQELETSNRRLEKIARFDILSGLLNRMSLFHTIDIEIERAVRTGRNLSGIMVDLDFFKM 225

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           INDN GH  GD+ I  +   L+         GR GGEEF      S+ +++  +A  LRK
Sbjct: 226 INDNHGHLAGDEAIRMVGKVLIQEMRRYDQAGRYGGEEFFVVLPDSNGEQSLGIAERLRK 285

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +E+S         I +T S G+      E     I RAD+A+Y AK+ GRNRVV 
Sbjct: 286 KLESSPFFF-DRKKISLTASFGVTTFKPGESREHWIGRADRAMYQAKQGGRNRVVL 340


>gi|300690033|ref|YP_003751028.1| diguanylate cyclase (GGDEF domain) [Ralstonia solanacearum PSI07]
 gi|299077093|emb|CBJ49714.1| putative diguanylate cyclase (GGDEF domain) [Ralstonia solanacearum
           PSI07]
          Length = 458

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/208 (30%), Positives = 106/208 (50%), Gaps = 12/208 (5%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           + L + +    S+    + + +L+  ++ ++ + LF ++  + Q+S  D L+G+ N S F
Sbjct: 242 FTLGWYVARVFSMFAPGVLVCVLVWEVT-TLYRRLFEAHVSLQQMSTHDALTGIYNRSYF 300

Query: 119 ISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-M 170
              L              S+V  D+D+FK+ ND FGH  GD  +A ++  L  V      
Sbjct: 301 NDQLPRAFDAARRGGRPFSLVMIDVDHFKRYNDTFGHLKGDGCLAAVASALEGVMHRHAG 360

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
           F+ R GGEEFA     ++ ++A +LA   R+ +   +I   + PS ++TISAG A    +
Sbjct: 361 FIARYGGEEFAVVLPDATPRDALLLAESAREAVLRLRIEAPA-PSRYVTISAGCATAAPE 419

Query: 231 EP--ISTIIYRADQALYVAKKSGRNRVV 256
            P  +  ++  AD  LY AK +GRN VV
Sbjct: 420 SPASLEALVEAADATLYRAKAAGRNLVV 447


>gi|253995796|ref|YP_003047860.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera mobilis JLW8]
 gi|253982475|gb|ACT47333.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera mobilis JLW8]
          Length = 976

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 79/184 (42%), Gaps = 12/184 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNF 146
             +  RI  L+  D L+ L N   F   L              ++VF D+D+FK +ND  
Sbjct: 526 KAASERIENLAFFDPLTNLPNRRLFSDRLTQALVNSTRSGNYGALVFLDLDHFKSLNDTL 585

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ--EAAILANDL--RKI 202
           GH  GD ++  ++ +L         V RLGG+EF       S    EAA     +  + +
Sbjct: 586 GHDYGDMLLKQVALRLSNCVREGDSVARLGGDEFVLLVENLSANDVEAAHQIEAIGDKIL 645

Query: 203 IENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +  +Q           T S GI+    H+E    ++  AD A+Y AKK+GRN +  F  +
Sbjct: 646 MSLNQPYQLQSHEYLSTPSIGISLFNGHQESSEDLLKHADIAMYQAKKAGRNTLRFFDPL 705

Query: 262 ENNT 265
              T
Sbjct: 706 MQET 709


>gi|254504372|ref|ZP_05116523.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
 gi|222440443|gb|EEE47122.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
          Length = 365

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 9/182 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           ++ L  S   I   S ID L+ L N   F +SL              +++  DID+FK+ 
Sbjct: 175 IENLQSSLEAIRYESLIDELTTLNNRKHFDNSLEKVIRNSIESGRGFALLMTDIDHFKKF 234

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD+V+  ++  +     +     R GGEEFA     ++  EA  +A  +R  
Sbjct: 235 NDTYGHQTGDQVLRLVALSVKQNISSQDVACRYGGEEFAIILPHAALDEAVEVAEKIRAA 294

Query: 203 I-ENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +     +  S+G ++  ITISAG+A     +   TI+ RAD+A+Y AK +GRN V   +D
Sbjct: 295 VMAKELVKRSTGENLGRITISAGVAAYNPDDNEHTIVSRADEAMYAAKNAGRNLVKTEND 354

Query: 261 IE 262
           +E
Sbjct: 355 LE 356


>gi|190890861|ref|YP_001977403.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190696140|gb|ACE90225.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 764

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 11/188 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVF 133
           L  +I+G  + E    ++RI  ++  D L+GL N +     L          N K+++ +
Sbjct: 315 LATHIAGIAI-ERKRVHDRIHFMAHHDDLTGLPNRAFLKERLANILDQARRNNRKVTVAY 373

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK IND  GH  GD+V+  ++ ++         V RLGG+EF    +  S  +A 
Sbjct: 374 IDLDNFKDINDGRGHAAGDEVLKEIATRMANSVRASDMVVRLGGDEFLVVLVHQSSHDAG 433

Query: 194 ILANDLRKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
            +A  LR++ +     +      I +T S G+A           ++  AD+A+Y AK+ G
Sbjct: 434 -IARRLRELQKAINRPMRGESGDIAVTASIGVAAFPVDGATAEELLANADRAMYRAKQLG 492

Query: 252 RNRVVCFS 259
           RN +    
Sbjct: 493 RNTLQHHD 500


>gi|218245310|ref|YP_002370681.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase [Cyanothece sp. PCC 8801]
 gi|218165788|gb|ACK64525.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Cyanothece sp. PCC 8801]
          Length = 455

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 12/185 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDI 136
           +    + E  +   ++ + +  D L+ L N   F   L    E+         +++F D+
Sbjct: 253 VIFRDITEQKLMNQKLHRQAFYDPLTNLPNRRWFYERLIDAIERVKRNPTYLFAVLFLDL 312

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAIL 195
           D FK IND+ GHP+GD+++  ++ +L  V  +   + R GG+EFA       S +EA  +
Sbjct: 313 DRFKVINDSLGHPIGDRLLTSVASRLRNVLRSIDTISRFGGDEFAILLENIHSSEEAIQI 372

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNR 254
           A  + KI++     +  G  +    S GI        +   +I  AD A+Y AK  G+  
Sbjct: 373 AQRIHKILQV--PFLIDGKEVLTNTSIGIVLSSTDYSLPDDLIRDADIAMYRAKAKGKGC 430

Query: 255 VVCFS 259
              F 
Sbjct: 431 YEIFD 435


>gi|49186952|ref|YP_030204.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne]
 gi|167633559|ref|ZP_02391883.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0442]
 gi|177652686|ref|ZP_02935102.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0174]
 gi|218905180|ref|YP_002453014.1| putative sensory box/GGDEF family protein [Bacillus cereus AH820]
 gi|49180879|gb|AAT56255.1| sensory box/GGDEF family protein, putative [Bacillus anthracis str.
           Sterne]
 gi|167530965|gb|EDR93652.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0442]
 gi|172082021|gb|EDT67089.1| putative sensory box/GGDEF family protein [Bacillus anthracis str.
           A0174]
 gi|218537493|gb|ACK89891.1| putative sensory box/GGDEF family protein [Bacillus cereus AH820]
          Length = 431

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          NE ++++ FDID FK +
Sbjct: 255 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAV 314

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 315 NDTYGHDFGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 374

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q +  S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 375 IETKQFSGIS----KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCVY 426


>gi|331663451|ref|ZP_08364361.1| cellulose synthesis regulatory protein [Escherichia coli TA143]
 gi|331059250|gb|EGI31227.1| cellulose synthesis regulatory protein [Escherichia coli TA143]
          Length = 558

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 536 LADRRLYLAKQAGRNRV-FASD 556


>gi|228987234|ref|ZP_04147355.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228772463|gb|EEM20908.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 430

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          NE ++++ FDID FK +
Sbjct: 254 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAV 313

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 314 NDTYGHDFGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 373

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q +  S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 374 IETKQFSGIS----KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCVY 425


>gi|160877266|ref|YP_001556582.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160862788|gb|ABX51322.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|315269471|gb|ADT96324.1| diguanylate cyclase [Shewanella baltica OS678]
          Length = 385

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 76/235 (32%), Positives = 115/235 (48%), Gaps = 17/235 (7%)

Query: 27  FMIYFSIFFSI-FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI 85
           +++Y +  F + FI   +F       +I L      +  LV    + II  T+ +LL   
Sbjct: 155 WLMYSTGLFGVGFIVRALFCYVKPELFIHLVAKSSFQSGLVIAGMIYIIFSTVVILLV-- 212

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQ 141
                  L      +S L+  D L+GL N  AF+ +    + S N  +S++  D+D FK+
Sbjct: 213 ------RLDRLNKELSTLASQDSLTGLFNRRAFMHNATSIIASENFPVSVLMLDLDNFKK 266

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH VGD V+   +D L         +GR GGEEFAA    +  ++A  ++  LR 
Sbjct: 267 INDVHGHNVGDTVLKLCADALQDGLKQYGIIGRFGGEEFAAILPRADSEQALAVSEKLRL 326

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            IE   +N    P I ++IS G+A       I  ++ RAD+ALY AK  GRN+V+
Sbjct: 327 AIETINVN----PDIRLSISIGVATSSSVSSIEPLLIRADKALYEAKSKGRNQVI 377


>gi|90581541|ref|ZP_01237334.1| putative c-di-GMP phosphodiesterase A-related protein [Vibrio
           angustum S14]
 gi|90437303|gb|EAS62501.1| putative c-di-GMP phosphodiesterase A-related protein [Vibrio
           angustum S14]
          Length = 690

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 86/181 (47%), Gaps = 7/181 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFG 147
           K+      +I QL ++D L+GLLN   F   L         + +++ DID FK IND+ G
Sbjct: 255 KDNKRQQGQIEQLVQMDPLTGLLNRHGFTRQLDQLMKAETPVVMLYIDIDNFKNINDSLG 314

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206
           H +GDKV+  ++ +L  +      +G L G+EFA        E+   I++  +  ++ N 
Sbjct: 315 HHIGDKVLQEIAQRLRRLLPETAILGYLSGDEFAILLPNPEHERTGEIISEQIIALV-NQ 373

Query: 207 QINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
              +      H+  S G +    H      ++  AD A+Y AK  GRNR+V F+D  +  
Sbjct: 374 PFELRHFRK-HLACSIGMVTSPGHGNDARMMLQNADTAMYEAKHRGRNRLVEFNDAMSKE 432

Query: 266 C 266
            
Sbjct: 433 A 433


>gi|83745574|ref|ZP_00942632.1| Hypothetical Protein RRSL_04633 [Ralstonia solanacearum UW551]
 gi|83727651|gb|EAP74771.1| Hypothetical Protein RRSL_04633 [Ralstonia solanacearum UW551]
          Length = 541

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 100/230 (43%), Gaps = 14/230 (6%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
           I     I ++ L    +   +      +  + L++ ++ I + + +     L+    +  
Sbjct: 303 IGDYPLIVSVGLATEDIYAEWRERARWIGGIVLLLDAVLIGMSIQF--AKQLRRRMEAEQ 360

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++ L+  D L+GL    A  S+L          ++ L+++  D+D FK  ND +GH  G
Sbjct: 361 KLAWLANTDGLTGLGTRRALDSALEAEWQRANRQHQPLAVLMIDVDEFKHYNDRYGHAAG 420

Query: 152 DKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D V+  ++  +   +     F GR GGEEF      +    A  +A  +R  +  +    
Sbjct: 421 DTVLRTVARCVNDSIRRPGDFAGRYGGEEFCVLLPNTDLPGAQRVAEAIRGTVLAAGEPN 480

Query: 211 SSGPSIHITISAGIAERCH----KEPISTIIYRADQALYVAKKSGRNRVV 256
           +      +T+S G+A         +  + +++RAD  LY AK  GRN V+
Sbjct: 481 AGSKHGRLTVSIGVAVHGGRSEAGDTPARLLHRADLQLYEAKSGGRNIVM 530


>gi|114331414|ref|YP_747636.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas eutropha C91]
 gi|114308428|gb|ABI59671.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas eutropha C91]
          Length = 984

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 9/186 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
           G  + E       ++ L+  D L+ L N   F   L         Y    +++FFD+D F
Sbjct: 541 GLDITEYKRVEGHLAWLADHDPLTNLYNRRRFSEELEQILSWAERYQHPGALLFFDLDRF 600

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND  GH  GD ++  ++D L     T     RLGG+EFA          A  +A  +
Sbjct: 601 KFVNDTSGHQAGDAMLKMVADMLSRTVRTADIAARLGGDEFAVILPEIMPGAAIEVAKKI 660

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +  +Q+++ +G + +I+ S GIA    H   +  ++  AD A+Y AK++GR     F
Sbjct: 661 LARLGETQLSL-NGRTHNISASIGIAIFPEHGNNVHDLLAAADLAMYQAKETGRGTWHLF 719

Query: 259 SDIENN 264
           S  + +
Sbjct: 720 SSDDQS 725


>gi|289628457|ref|ZP_06461411.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289649259|ref|ZP_06480602.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|330869951|gb|EGH04660.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 860

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 11/194 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI----- 131
           T ++LL        +EL  +  R+   +  D L+GL N S     L    +   +     
Sbjct: 407 TANVLLEARVRDRTRELDQANARLQHENSHDSLTGLPNRSHLQHRLKQAWQDFCLNGQQL 466

Query: 132 --VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
             +F D+D FK IND+ GH  GD ++   +++L         + RLGG+EFA  ++ +  
Sbjct: 467 IVMFIDLDRFKMINDSLGHHCGDILLVQAAERLRSCMREGDLLARLGGDEFAVLSIDAPL 526

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
           Q    +A  +    E  Q  +    S+  + S G+  A+    E  + ++  AD A+Y  
Sbjct: 527 QAGTDIAQRILTAFE--QPFVIDDHSVFSSCSIGVVGADSRFHEEPADLLRDADTAMYRV 584

Query: 248 KKSGRNRVVCFSDI 261
           K  GR+    F+  
Sbjct: 585 KNGGRDSFAVFNQA 598


>gi|91794451|ref|YP_564102.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91716453|gb|ABE56379.1| GGDEF domain [Shewanella denitrificans OS217]
          Length = 580

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 80/173 (46%), Gaps = 11/173 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQIND 144
           +L  +   + QL+  D L+GL N  A       ++S     N  LS+   DID+FK++ND
Sbjct: 407 QLHDATINMRQLAFTDPLTGLSNRRAGTVETGAYLSRFKQDNLALSVAILDIDFFKRVND 466

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+   +  L         + R GGEEF     G+    A  +   L   I 
Sbjct: 467 TYGHSRGDEVLISFARLLKATVRPSDRLYRWGGEEFLVLFPGADIAAATQVCERLCHTIA 526

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +            IT S G+ E    + + +++ RAD ALY AK+ GRNRV  
Sbjct: 527 SKHFEGVG----RITSSLGVTEASLDDSLDSLVSRADVALYQAKQQGRNRVCI 575


>gi|115524947|ref|YP_781858.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisA53]
 gi|115518894|gb|ABJ06878.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisA53]
          Length = 802

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 59/194 (30%), Positives = 94/194 (48%), Gaps = 12/194 (6%)

Query: 83  GYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEK---LSIVFFD 135
           G+++    + E   +  RI+ L+R D L+ L N + F   I  +  Y  +    ++++ D
Sbjct: 353 GWVTTIEDVTEWRKTQERIAHLARHDALTDLPNRTTFREEIDRVLRYTRREVGAAVLYID 412

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL--GSSEQEAA 193
           +D+FK+IND+ GHP+GD+++  ++ +L         V RLGG+EFA   +     E +AA
Sbjct: 413 LDHFKEINDSLGHPIGDELLIEVARRLADCIRDGDLVARLGGDEFAVIQISHHEPESDAA 472

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGR 252
            LA  +  II  S      G  + I  S GIA           +I +AD ALY AK  GR
Sbjct: 473 ALAMRIVSII--STPYELQGHHVSIGASVGIALAPTDASEPDELIKKADLALYRAKAEGR 530

Query: 253 NRVVCFSDIENNTC 266
                F    + + 
Sbjct: 531 GSYRFFELDMDASA 544


>gi|94312895|ref|YP_586104.1| putative response regulator of a two-component system [Cupriavidus
           metallidurans CH34]
 gi|93356747|gb|ABF10835.1| putative response regulator of a two-component system [Cupriavidus
           metallidurans CH34]
          Length = 335

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 83/178 (46%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+ L N   F                +L+++  D+D FK  N
Sbjct: 157 QQLLETNLELQRLTNSDGLTSLSNRRYFDEYLGAEWKRAQREQTQLALLMIDVDAFKGYN 216

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+V+  ++  +            R GGEEF+     +S   A +LA  +R+ 
Sbjct: 217 DTYGHVAGDEVLRRVAAVIRENCARPADLPARFGGEEFSMILPATSPGGARLLAEKVRRA 276

Query: 203 IENSQINISSGPSIH-ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IE  +I  +  P+   +T+S G A          S +I  AD  LY AK++GRN+VV 
Sbjct: 277 IETLRIPHACSPTGGFVTVSIGGAVIVPGGDADFSRLIEAADAGLYQAKRNGRNQVVM 334


>gi|333024253|ref|ZP_08452317.1| putative integral membrane phosphodiesterase [Streptomyces sp.
           Tu6071]
 gi|332744105|gb|EGJ74546.1| putative integral membrane phosphodiesterase [Streptomyces sp.
           Tu6071]
          Length = 1286

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 89/199 (44%), Gaps = 17/199 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           ++   + E      ++   +  D L+ L N + F   +          +  ++++F D+D
Sbjct: 470 LNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTRRVRRALKGRRTGDTGVAVLFIDLD 529

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND+ GH  GD+++   + +L     +     RLGG+EFAA  +G   ++ A    
Sbjct: 530 GFKGVNDSIGHQAGDELLVQAARRLHESVRSGDTAARLGGDEFAALIVGDGSRDVAAREQ 589

Query: 198 DLRKIIENSQINIS-----SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            ++ + E  ++ +S      G  + I  S G+A   +      ++  AD A+Y AK  G+
Sbjct: 590 QIKDLAERLRVALSLPYTIEGQEVRIAASIGVAFAENGLGAGELLRNADLAMYRAKGLGK 649

Query: 253 NRVVCF-----SDIENNTC 266
           +RV  +     ++    T 
Sbjct: 650 DRVELYVPQLQTEAARRTA 668


>gi|301049579|ref|ZP_07196532.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1]
 gi|300298648|gb|EFJ55033.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1]
          Length = 374

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|15805298|ref|NP_293990.1| hypothetical protein DR_0267 [Deinococcus radiodurans R1]
 gi|6457939|gb|AAF09850.1|AE001888_3 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 511

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 105/225 (46%), Gaps = 10/225 (4%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
              +     + ++   L   G++P +  + I +  ++L ++ +     +G+ S  + ++L
Sbjct: 280 VLVLLPYLAMIVSGFLLLRSGVSPQFPHKQIEIWTVALFVVVMLRQAFVGWESARLNQQL 339

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGH 148
                 +  L+  D L+GL N +AF   L         + L++++ D++ FK +ND  GH
Sbjct: 340 ARQAQELHHLAFHDALTGLHNRAAFEDELQRQLHVPRPQPLALLYLDLNNFKPVNDTLGH 399

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQ 207
             GD+ +A ++ +L        FV RLGG+EFA       +++AA  A + +R  +E  +
Sbjct: 400 AAGDQALAQVAQRLQAALPAGTFVARLGGDEFAVLLTSIPDEDAAWAAEEQIRAALE--R 457

Query: 208 INISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKS 250
                   +H++ + G+      E +    +   ADQA+Y  K S
Sbjct: 458 PMQLGEHVVHLSAAVGVTLAPAGEAVVPEILWREADQAMYRVKHS 502


>gi|134293814|ref|YP_001117550.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
 gi|134136971|gb|ABO58085.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
          Length = 492

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 91/211 (43%), Gaps = 10/211 (4%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           +    +      +LV       + +  + G+ L+    + + +  L+R D L+GL N  +
Sbjct: 278 YAAWRHRAATIGALVATFGAAFIAVSVMLGAQLRHRMRAESELVLLARTDGLTGLGNRRS 337

Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
           F   L     +        S++F D+D FK  ND +GH  GD  +A ++  +      P 
Sbjct: 338 FAEVLEREWRRARRARSVFSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGDNIRRPV 397

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               R GGEEF      + E  AA +A  +R  I+   +        H+T S G+A    
Sbjct: 398 DSAARYGGEEFVVLLPDTPEPGAARIAERIRAAIDELALEHVGSEHGHVTASIGLASWTP 457

Query: 230 --KEPISTIIYRADQALYVAKKSGRNRVVCF 258
              E    +I  AD+ALY A  +GRN+V  F
Sbjct: 458 ERDEEADNMIKAADRALYRANATGRNKVAAF 488


>gi|224827064|ref|ZP_03700161.1| diguanylate cyclase with GAF sensor [Lutiella nitroferrum 2002]
 gi|224600730|gb|EEG06916.1| diguanylate cyclase with GAF sensor [Lutiella nitroferrum 2002]
          Length = 631

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 67/184 (36%), Positives = 95/184 (51%), Gaps = 9/184 (4%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVF 133
           LLG   G  + E   S + +  ++  D L+G++    F             Y  +LS+  
Sbjct: 445 LLGRWVGIAIAE-DRSISTLRSIATTDELTGVMRRGHFTEIAEKEFGRTKRYGGRLSMFL 503

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+DYFK+IND+FGH  GD+ +  ++     V  +   +GRLGGEEFA     + E EA 
Sbjct: 504 IDLDYFKRINDSFGHYGGDETLKRVAIVFQQVLRSSDILGRLGGEEFAVLLPNTPESEAK 563

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +A  LR  +E S I   SG  I +TIS G+AE   ++  + I  R D ALY AK+ GRN
Sbjct: 564 EVAERLRHEVEESTIQALSG-EIRVTISIGVAELAAEDDFTAIYNRCDAALYEAKRRGRN 622

Query: 254 RVVC 257
            VV 
Sbjct: 623 CVVA 626


>gi|171316470|ref|ZP_02905688.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
 gi|171098410|gb|EDT43214.1| diguanylate cyclase [Burkholderia ambifaria MEX-5]
          Length = 506

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFD 135
           ++    L++       ++ L+R D L+GL N  A  ++L    E+L        S++F D
Sbjct: 312 WLLAFALRDNLRKQTLLTNLTRTDPLTGLHNRRALDAALADEWERLQRGSDGSLSVLFID 371

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
            D+FKQ ND +GH  GD  + FL++ +            R GGEEF A    + E  A  
Sbjct: 372 ADHFKQYNDRYGHAQGDTALRFLAECIRAHTRRRGDLAARYGGEEFVAVLPDTDEHGAQQ 431

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGR 252
           +A  +R+ +E ++++         T+S G A   R     +  + ++AD ALY AK+ GR
Sbjct: 432 VAEAIRRAVERNRLDGFDATIPAFTVSIGCATGHRARPASVHALTHQADLALYAAKRDGR 491

Query: 253 NRVVCFS 259
           NRV    
Sbjct: 492 NRVCVAD 498


>gi|74318446|ref|YP_316186.1| diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057941|gb|AAZ98381.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 954

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           + L      +  ++  D L+ L N +  +  L       G    +L++VF D+D FK IN
Sbjct: 502 QALREKDAHLEHVAYHDPLTDLPNRALLLDRLRAAVSRNGRTGGRLAVVFIDLDRFKTIN 561

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKI 202
           D+ GH VGD V+   + +L  +      + RLGG+EF     G  +  AA  +A  +   
Sbjct: 562 DSLGHAVGDAVLQAAASRLRSLTRDGDTLARLGGDEFVLLLDGLRDNAAAGAVAEKIITA 621

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +E   +++ S P +HI+ S GI+           ++  AD A+Y +K+ GRN    + 
Sbjct: 622 LERM-LHVGSYP-LHISASIGISLYPEDGRDAEALLRHADAAMYKSKERGRNTFHFYE 677


>gi|91794950|ref|YP_564601.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91716952|gb|ABE56878.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella denitrificans
           OS217]
          Length = 570

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 90/190 (47%), Gaps = 11/190 (5%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           ++L       + +EL  SY ++  L+  D L+GL N   F  +L          N+ L++
Sbjct: 115 AILQAQERFKLEQELRSSYVKLRHLAERDTLTGLTNRYFFDETLKNAIPTAKRENKSLAL 174

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  D+D+FK +ND  GH  GD ++  ++ +L         + RLGG+EFA          
Sbjct: 175 IMLDLDFFKNVNDTMGHEAGDYLLQEVAQRLKNPLREGDTLCRLGGDEFAILVQNLG--N 232

Query: 192 AAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
              +   + ++ E+ +   + +G  + +T S GIA         + ++  AD A+Y +K 
Sbjct: 233 IVNIGQLIARVFESLKPAMMINGNPVTVTASLGIATYPDCATDANQLMKCADVAMYRSKS 292

Query: 250 SGRNRVVCFS 259
           SGRN+   +S
Sbjct: 293 SGRNQSHFYS 302


>gi|330956959|gb|EGH57219.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 432

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 115/292 (39%), Gaps = 34/292 (11%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIF-----LFYIGL 55
           + +S    L  WL  +    +       +    +    ++  + +         L    +
Sbjct: 141 LEQSYPVELQAWLA-DIRWPALHGDWMSLIQLSYLMFLVSFGVLVWQYLEKPRPLHAAQI 199

Query: 56  TPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
               GL + L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL  
Sbjct: 200 VGLLGLFWALPKTFILPFTLNILCSQVMLMIAAAVAHEAY-------QMAFRDELTGLPG 252

Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
             A    +        +   D+D+FK+ ND +GH VGD+V+  ++ +L  +        R
Sbjct: 253 RRALNERMQRLGRNYVLAMSDVDHFKKFNDTYGHDVGDQVLRLVASKLSKITSGGGKAYR 312

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-------------------S 215
            GGEEFA      +  E     + +R+ I   +I + +                     S
Sbjct: 313 YGGEEFAIVFAARTLDECMPHLDAIRETIAQYEIQLRNKDNRPQDDQQGRQRRGGAHTGS 372

Query: 216 IHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           + +TIS G+AER         ++  ADQALY AK +GRN VV F  +     
Sbjct: 373 VSVTISIGVAERQPEHRSAEEVLKCADQALYAAKGAGRNCVVAFDQLNRRGA 424


>gi|327190711|gb|EGE57793.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 764

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 11/188 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVF 133
           L  +I+G  + E    ++RI  ++  D L+GL N +     L          N K+++ +
Sbjct: 315 LATHIAGIAI-ERKRVHDRIHFMAHHDDLTGLPNRAFLKERLANILDQARRNNRKVTVAY 373

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK IND  GH  GD+V+  ++ ++         V RLGG+EF    +  S  +A 
Sbjct: 374 IDLDNFKDINDGRGHAAGDEVLKEIATRMANSVRASDMVVRLGGDEFLVVLVHQSSHDAG 433

Query: 194 ILANDLRKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
            +A  LR++ +     +      I +T S G+A           ++  AD+A+Y AK+ G
Sbjct: 434 -IARRLRELQKAINRPMRGESGDIAVTASIGVAAFPVDGATAEELLANADRAMYRAKQLG 492

Query: 252 RNRVVCFS 259
           RN +    
Sbjct: 493 RNTLQHHD 500


>gi|326795669|ref|YP_004313489.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326546433|gb|ADZ91653.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 587

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 115/238 (48%), Gaps = 21/238 (8%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL-----LLGYISGSILK- 91
            IAT I +    L     +P   +   + + L+   +S+ IS+      +G ++ ++++ 
Sbjct: 350 IIATAIALVGYLLSADLSSPIMSMTEAM-KKLAKNDLSVNISVNQRKDEVGSMALALIEF 408

Query: 92  -----ELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQ 141
                E      R+S +++ D L+GL N    +S +           L+ +F D+D FK+
Sbjct: 409 KNFAIEREALRERLSHMAKHDTLTGLPNRDYIMSYISDTLAEDEQRGLTAMFADLDGFKK 468

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           +ND+ GH  GD+++  +S++L         VGR+GG+EF         E EA  +A+ + 
Sbjct: 469 VNDDLGHQAGDELLRQVSERLKHSVREGDVVGRIGGDEFVIILPDVIHETEAENIAHKIL 528

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + ++  Q     G   H+ IS G A    H + +  ++  AD A+Y +K++G++R V 
Sbjct: 529 QSVK--QPYQIEGDQAHVGISIGAASYPNHTDDLDELLKIADAAMYHSKRTGKHRFVY 584


>gi|307299825|ref|ZP_07579613.1| diguanylate cyclase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306914526|gb|EFN44924.1| diguanylate cyclase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 311

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 86/173 (49%), Gaps = 10/173 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIN 143
           KEL  +   I +L   D L+GL N   F++ L    E        LSI+  DID FK++N
Sbjct: 141 KELQAANKEIERLMNCDPLTGLSNRREFMNRLDKEIESLCSTCKPLSIIMADIDDFKRVN 200

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GHP GD+V+   +D L  +        R GGEEF      ++ +EA  +A ++RK  
Sbjct: 201 DTRGHPEGDRVLQLFADVLNEIISPRRTTVRYGGEEFIVMLPETTSEEATEIAEEVRKNF 260

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E           + +T S G+A     +  S+I+ R D ALY AK  G+NRVV
Sbjct: 261 ER---ETEKKLGLTVTASFGVATFKPSDTKSSILKRVDDALYSAKSGGKNRVV 310


>gi|307729172|ref|YP_003906396.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia sp. CCGE1003]
 gi|307583707|gb|ADN57105.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia sp. CCGE1003]
          Length = 767

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 82/194 (42%), Gaps = 15/194 (7%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----------LSIV 132
            IS + +  +  +  ++  L+  D L+GL N +     + S               ++++
Sbjct: 313 LISFTDIGPVREAQRQLKFLATRDSLTGLYNRAYLTERMHSLFAPGGPNGSGEVVSVAVL 372

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQE 191
           F D+D FK++ND  GH  GD ++  ++++L         + R+GG+EF           +
Sbjct: 373 FVDLDGFKKVNDTAGHEAGDALLRSVAERLAGCVRHDDTLARVGGDEFVIVVSACDCNDQ 432

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
              LA  +   I        +    ++  S GI+      +   T++  AD A+Y AK+ 
Sbjct: 433 LVALARRILDAIAV--PFAVAENEYYLGASIGISRYPEDGQDAPTLMRNADSAMYHAKQR 490

Query: 251 GRNRVVCFSDIENN 264
           GRN    F+   N 
Sbjct: 491 GRNNFQFFTAELNQ 504


>gi|222147482|ref|YP_002548439.1| two component response regulator [Agrobacterium vitis S4]
 gi|221734472|gb|ACM35435.1| two component response regulator [Agrobacterium vitis S4]
          Length = 649

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 10/177 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L  +   + + +  D L+GL N  AF   L             +S++  DID+FK  ND 
Sbjct: 450 LRHTNRALEKAAFTDGLTGLYNRRAFDVQLRQEFARSHRTGSGVSLLMIDIDHFKLFNDR 509

Query: 146 FGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD+ +  ++  L  V   +     R GGEE A     +     + +A    + + 
Sbjct: 510 YGHQAGDQCLRQIAATLRSVAKRSTDIAARYGGEEMALILSDTDLAGGSTVAEYYCQAVR 569

Query: 205 NSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  I         +T+S G+A     +      ++  AD ALY AK SGR++ V  S
Sbjct: 570 DLHIPHGDSEKGIVTVSIGVAAAPSDDIQSSDDLVASADAALYQAKHSGRDQYVTAS 626


>gi|182627106|ref|ZP_02954825.1| GGDEF/HD domain protein [Clostridium perfringens D str. JGS1721]
 gi|177907516|gb|EDT70171.1| GGDEF/HD domain protein [Clostridium perfringens D str. JGS1721]
          Length = 563

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 102/227 (44%), Gaps = 11/227 (4%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI 100
            V  +++  +  I L      +  +     L++  + +  L  +  G  +K        +
Sbjct: 132 VVSVVSSAIILAIDLIFSGNADVNIYFQNDLILAGVFV--LTAWTLGFYVKTENDHIKEL 189

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
             L   D L+G+ NH  F   L          NEKLS++F DIDYFK  ND +GH  GD+
Sbjct: 190 QTLVNEDGLTGVYNHRYFYDKLREKMHISEVENEKLSLIFMDIDYFKHYNDLYGHQKGDE 249

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISS 212
            +  +   L  +      V R GGEEFA     +SE+EA  +A  +R  +E +      +
Sbjct: 250 ALKKIGKLLKNIARENDLVARYGGEEFAIILPNTSEEEATKIAERIRNKVEKTYFEGQEN 309

Query: 213 GPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCF 258
            P+ + T+S GIA    K      ++  AD ALY AK   +NRV  +
Sbjct: 310 QPNANFTVSVGIAVFPDKAKSELDLVKCADDALYRAKFFHKNRVETY 356


>gi|319426455|gb|ADV54529.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella putrefaciens 200]
          Length = 1028

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 84/182 (46%), Gaps = 10/182 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDY 138
           + + + +L      + +++  D L+GL N    +        ++       ++ F D+D 
Sbjct: 567 TQADITQLKNHEAELDKVANYDALTGLPNRRLLLDRFKQAISRVNRDGRLCAVCFLDLDG 626

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND++GH VGD+++  + D L  +      + R+GG+EF A     SE E   +   
Sbjct: 627 FKAVNDHYGHDVGDQLLVAIVDNLSKIMREQDTLARVGGDEFVALFDICSEAECTQVLER 686

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           +   I+  Q  +    ++ ++ S G++           ++  AD A+Y+AK +G+N    
Sbjct: 687 MLCAID--QTVLIGDKNLRLSASIGVSLYPEDNVDPDILLRHADHAMYMAKAAGKNCFQM 744

Query: 258 FS 259
           F 
Sbjct: 745 FD 746


>gi|159045360|ref|YP_001534154.1| response regulator [Dinoroseobacter shibae DFL 12]
 gi|157913120|gb|ABV94553.1| response regulator [Dinoroseobacter shibae DFL 12]
          Length = 462

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 96/204 (47%), Gaps = 18/204 (8%)

Query: 71  LVIISITISLLLGYISGSILKELFISY------NRISQLSRIDCLSGLLNHSAFISSLG- 123
           +V   I +  +   +   + ++           +R+ Q + ID L+GL N    +  L  
Sbjct: 253 VVFAPIAVEEMAVRLRAQLQRKRANDQWRSEVSDRLRQ-AVIDPLTGLYNRRFALGQLSN 311

Query: 124 ------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                   +   +++  D D+FK+IND +GH  GDKV+A  +  L     +   + R+GG
Sbjct: 312 IAQEALKTHRTFAVLLLDFDHFKKINDAYGHAAGDKVLAETATLLRTRLRSLDVIARIGG 371

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIA---ERCHKEPI 233
           EEF      +   EA  +A  LR  I++  I +  G  SI +TIS G+A       +  +
Sbjct: 372 EEFLMVLPDTDLDEARRVAERLRASIDDHPIALPHGKGSIPVTISIGLAIGGAAAPEASV 431

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
           S ++  AD+ALY AK  GRN+V  
Sbjct: 432 SELLETADRALYAAKSEGRNQVSV 455


>gi|152968250|ref|YP_001364034.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Kineococcus radiotolerans SRS30216]
 gi|151362767|gb|ABS05770.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Kineococcus radiotolerans SRS30216]
          Length = 708

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 10/182 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           I+   + E   +   ++  +  D L+GL N   F  +L           + ++++  D+D
Sbjct: 266 INCRDITEEQHAREALAAEAVRDPLTGLPNRRYFTQALQHALARSARSGQPVALLLLDVD 325

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA 196
           +FK +ND  GHP GD+++  L+ +L         V RLGG+EF   A       EA +LA
Sbjct: 326 HFKHVNDAHGHPAGDRLLTTLAQRLRSSLRPSDTVCRLGGDEFVVLAEDLHHLDEALLLA 385

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +   +      +     + +++S G++          ++  AD ALY AK+ GR+R  
Sbjct: 386 ERVN--VAAGGTYLLDHGEVRVSVSIGVSTAVGPGDPDALLSTADHALYEAKRRGRDRAE 443

Query: 257 CF 258
            F
Sbjct: 444 VF 445


>gi|330890740|gb|EGH23401.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 960

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 11/194 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI----- 131
           T ++LL        +EL  +  R+   +  D L+GL N S     L    +   +     
Sbjct: 507 TANVLLEARVRDRTRELDQANARLQHENSHDSLTGLPNRSHLQHRLKQAWQDFCLNGQQL 566

Query: 132 --VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
             +F D+D FK IND+ GH  GD ++   +++L         + RLGG+EFA  ++ +  
Sbjct: 567 IVMFIDLDRFKMINDSLGHHCGDILLVQAAERLRSCMREGDLLARLGGDEFAVLSIDAPL 626

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
           Q    +A  +    E  Q  +    S+  + S G+  A+    +  + ++  AD A+Y  
Sbjct: 627 QAGTDIAQRILTAFE--QPFVIDDHSVFSSCSIGVVGADSRFHQEPADLLRDADTAMYRV 684

Query: 248 KKSGRNRVVCFSDI 261
           K  GR+    F+  
Sbjct: 685 KNGGRDSFAVFNQA 698


>gi|312946548|gb|ADR27375.1| putative diguanylate cyclase [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 558

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LLL  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTSMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G++  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 536 LADRRLYLAKQAGRNRV-FASD 556


>gi|225867397|ref|YP_002752775.1| GGDEF domain protein [Bacillus cereus 03BB102]
 gi|225788193|gb|ACO28410.1| diguanylate cyclase (GGDEF) domain protein [Bacillus cereus
           03BB102]
          Length = 351

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 110/230 (47%), Gaps = 18/230 (7%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI---SGSILKE 92
           S+F   + F  N++  +I   P +    IL +++S+V + +  S +  YI   S + + +
Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLF----ILFKDMSIVALYLVCSSVAAYITFISANYVLQ 179

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
               + ++ Q + ID L+GL N   F   +  +       N  L ++  DID+FK +ND 
Sbjct: 180 SNELFQKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSVNDT 239

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GHP GD+V+  +   L  V   P    R GGEEFA             +   +R  +E 
Sbjct: 240 YGHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRTAVEK 299

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               +  G  I IT+S GI+    ++     I  AD ALY +K++GRN+V
Sbjct: 300 HSFQLLDGTKIKITVSVGISVY--EQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|153212272|ref|ZP_01948060.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|124116650|gb|EAY35470.1| GGDEF family protein [Vibrio cholerae 1587]
          Length = 372

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 8/176 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L+    ++  LS  D L+GL N    +  L           +    V  DID FK +N
Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDSQQPFVCVMIDIDGFKAVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH VGDKV+  +++ L   F +   V RLGG+EF      +       +A  + + I
Sbjct: 253 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETDTAGGVYIAEQVCRAI 312

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   I++ +      ++S G+A      +    ++  ADQA+Y+AK  G+NRV  F
Sbjct: 313 QQQVISLENNIRWQGSVSMGVAAFASNMKEHHELLRAADQAVYLAKNRGKNRVCAF 368


>gi|312196611|ref|YP_004016672.1| diguanylate cyclase [Frankia sp. EuI1c]
 gi|311227947|gb|ADP80802.1| diguanylate cyclase [Frankia sp. EuI1c]
          Length = 534

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/228 (24%), Positives = 104/228 (45%), Gaps = 16/228 (7%)

Query: 46  ANIFLFYIGLTPFYGLEYILV---ENLSLVIISITISLLLGYISGSILK-----ELFISY 97
           A I L Y+ LT    L  + V   +    + I + + L+    +  ++       L  ++
Sbjct: 296 AQILLPYVPLTAVTVLTAVRVIEQDPFGFIEIGVGVGLVFLVTARQLVTIVQNVRLLTAF 355

Query: 98  NR----ISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +     +   +  D L+GL N   F+  L      + E+++++F D+D FK++ND +GH 
Sbjct: 356 DERGRLLHHQANHDALTGLANRKLFLERLAVAGQRHGERMALLFCDLDGFKRVNDVYGHK 415

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+   S +L+          RLGG+EFA    G+  +EA   A  +   +      
Sbjct: 416 AGDAVLRVTSARLLGCIREQDLAARLGGDEFAVLLDGAGREEAGQAAGRIVGAMRRPVHV 475

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            S    I I++ A + +      +  +++RAD A+Y AK++G++    
Sbjct: 476 ESRDYLIGISVGAAVVDPAGPTDVEALVHRADAAMYRAKRAGKSCFAI 523


>gi|167648073|ref|YP_001685736.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Caulobacter sp. K31]
 gi|167350503|gb|ABZ73238.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Caulobacter sp. K31]
          Length = 692

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/190 (29%), Positives = 81/190 (42%), Gaps = 19/190 (10%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + +       +  L+  D L+GL N + F               E   ++  D+D+FK 
Sbjct: 253 DITDRRRQTEAVENLAFKDPLTGLPNRAYFNRKFQEAVDASEIMGELFGLIMIDVDHFKD 312

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAILA 196
           IND  GH  GD ++  L++ L   F +   V RLGG+EFA    G   +         L 
Sbjct: 313 INDTLGHDAGDALLKRLAEMLHAAFRSGDTVARLGGDEFAVILRGLHSEADMMRPVNALQ 372

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
           + LR+ IE        G S  ++ S G A         S +I  AD ALY AK  GRNR 
Sbjct: 373 DLLRRPIE------HGGRSFSVSASIGAALHGDLDADPSHMIKNADIALYRAKDEGRNRS 426

Query: 256 VCFSDIENNT 265
           V F+    ++
Sbjct: 427 VVFTPAMRSS 436


>gi|158319873|ref|YP_001512380.1| diguanylate cyclase with PAS/PAC sensor [Alkaliphilus oremlandii
           OhILAs]
 gi|158140072|gb|ABW18384.1| diguanylate cyclase with PAS/PAC sensor [Alkaliphilus oremlandii
           OhILAs]
          Length = 541

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 11/181 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136
           Y S   + E      ++  ++  D L+GL N           I    + ++ +++   D+
Sbjct: 362 YSSARDVTEKMEKEAQLLNIAVRDELTGLYNRHFLVSYLKNEIEKAEAEDQPMTMAILDL 421

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK +ND +GHPVGD+ +   +  ++ V  +   + R GGEE       ++  +A I+ 
Sbjct: 422 DQFKLVNDTWGHPVGDEQLKHTAKTILRVIRSTDLLVRYGGEELVIIMEKTNIDDAKIVL 481

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  IEN+Q  I+       T+S G AER   E       RADQALY AK  GRNRV+
Sbjct: 482 EKIRMAIENNQYPITGRQ----TVSIGAAERAKSELFVDWYKRADQALYHAKNRGRNRVI 537

Query: 257 C 257
           C
Sbjct: 538 C 538


>gi|331008592|gb|EGH88648.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 960

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 11/194 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI----- 131
           T ++LL        +EL  +  R+   +  D L+GL N S     L    +   +     
Sbjct: 507 TANVLLEARVRDRTRELDQANARLQHENSHDSLTGLPNRSHLQHRLKQAWQDFCLNGQQL 566

Query: 132 --VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
             +F D+D FK IND+ GH  GD ++   +++L         + RLGG+EFA  ++ +  
Sbjct: 567 IVMFIDLDRFKMINDSLGHHCGDILLVQAAERLRSCMREGDLLARLGGDEFAVLSIDAPL 626

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
           Q    +A  +    E  Q  +    S+  + S G+  A+    +  + ++  AD A+Y  
Sbjct: 627 QAGTDIAQRILTAFE--QPFVIDDHSVFSSCSIGVVGADSRFHQEPADLLRDADTAMYRV 684

Query: 248 KKSGRNRVVCFSDI 261
           K  GR+    F+  
Sbjct: 685 KNGGRDSFAVFNQA 698


>gi|331658001|ref|ZP_08358963.1| cellulose synthesis regulatory protein [Escherichia coli TA206]
 gi|315296460|gb|EFU55757.1| diguanylate cyclase domain protein [Escherichia coli MS 16-3]
 gi|331056249|gb|EGI28258.1| cellulose synthesis regulatory protein [Escherichia coli TA206]
          Length = 558

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LLL  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G++  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 536 LADRRLYLAKQAGRNRV-FASD 556


>gi|171059262|ref|YP_001791611.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Leptothrix cholodnii SP-6]
 gi|170776707|gb|ACB34846.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptothrix cholodnii SP-6]
          Length = 1066

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 88/182 (48%), Gaps = 11/182 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           + +     +  R+  L+  D L+ L N    +S L            +++++F D+D FK
Sbjct: 612 TDITPQKEAEQRLQHLAHFDPLTQLPNRLMVLSRLEHAIASAARAERRVAVLFIDLDNFK 671

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            +ND+ GH  GD ++  ++D+L         +GRLGG+EF        E Q+AA +A +L
Sbjct: 672 TVNDSLGHSAGDDLLRAVADRLGTRTRREDTLGRLGGDEFILMLEHLREPQDAAQVAQEL 731

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
             ++E       +G  +++  S GI+        +  ++  AD A+Y AK++GR     +
Sbjct: 732 IGLLET--PFRVAGQEVYVQASIGISLYPDDGLEVGELVRDADAAMYQAKRAGRGVYRFY 789

Query: 259 SD 260
           ++
Sbjct: 790 TE 791


>gi|87118350|ref|ZP_01074249.1| sensory box protein [Marinomonas sp. MED121]
 gi|86165984|gb|EAQ67250.1| sensory box protein [Marinomonas sp. MED121]
          Length = 702

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 12/184 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
             + +       I Q +  D L+GL N    +  L          N  L++ + D+D FK
Sbjct: 244 RDISQRKADEKLIWQQANYDHLTGLPNRRLLLDRLEQLIHRIHHTNSSLALFYLDLDRFK 303

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA--ILAND 198
           ++ND FGH  GD ++  ++ +L         V RLGG+EF        +++ A  I    
Sbjct: 304 EVNDKFGHAKGDLLLQDVAKRLTQCVRKSDTVARLGGDEFTIIIAELEDEDKANKITVER 363

Query: 199 LRKIIENS--QINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRV 255
           + + I N+  +        ++I+ S GI         S  ++  ADQA+Y AKK G+N  
Sbjct: 364 IAQAILNALNRPFKLDNEQVYISASIGITFYPEDANFSDVLLNAADQAMYAAKKQGKNCF 423

Query: 256 VCFS 259
             FS
Sbjct: 424 QYFS 427


>gi|158316408|ref|YP_001508916.1| serine/threonine protein kinase [Frankia sp. EAN1pec]
 gi|158111813|gb|ABW14010.1| serine/threonine protein kinase [Frankia sp. EAN1pec]
          Length = 1629

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 58/215 (26%), Positives = 89/215 (41%), Gaps = 23/215 (10%)

Query: 66   VENLSLVIISITISLLLGYISGSILK--------------ELFISYNRISQLSRIDCLSG 111
            +E + L+   + +SL    +  S+ +               L  + +++ QLS  D L+G
Sbjct: 1399 LEGIMLIAGQLAVSLDNAMVYASLERKVTERTGQLAATNERLAAANHQLEQLSVTDPLTG 1458

Query: 112  LLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
            L N      +L         +   +++   DID+FK  ND+FGH  GD+ +  ++  L  
Sbjct: 1459 LANRRRLEETLDVEWRRAQEHAAPIALAMVDIDHFKLYNDHFGHTAGDRCLQRVAACLAE 1518

Query: 165  VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
              G      R GGEEF      +    AA LA  L   +E             IT+S G+
Sbjct: 1519 NVGDTFLTARYGGEEFTVVMPDTDSDTAARLARRLCSAVEELAEPHPLVVERIITVSIGV 1578

Query: 225  --AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              A     + ++     AD ALY AK  GRNRV  
Sbjct: 1579 TAAIPTPDDDMAAFAEFADVALYRAKDGGRNRVRM 1613


>gi|82775715|ref|YP_402062.1| diguanylate cyclase AdrA [Shigella dysenteriae Sd197]
 gi|309786950|ref|ZP_07681562.1| diguanylate cyclase domain protein [Shigella dysenteriae 1617]
 gi|81239863|gb|ABB60573.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|308924528|gb|EFP70023.1| diguanylate cyclase domain protein [Shigella dysenteriae 1617]
          Length = 371

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|71909657|ref|YP_287244.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71849278|gb|AAZ48774.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 739

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/218 (24%), Positives = 99/218 (45%), Gaps = 18/218 (8%)

Query: 64  ILVENLSLVIISITISLLLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  E L++  +      +  Y+S  S +  L ++ + I  L+  D L+ + N    ++ L
Sbjct: 250 IFPEWLTISGVRDGRGKVTHYVSTFSDISNLKVAESEIHHLAFYDPLTAMPNRRLLLNRL 309

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                      +  +++  DID+FK +ND  GH VGD ++  ++ +L           R 
Sbjct: 310 DQACVSAKRSGQFGALLIIDIDHFKTLNDTLGHDVGDHLLVEVARRLSACIREGDTAARQ 369

Query: 176 GGEEFAAAALGSSEQ------EAAILANDLRKIIENSQINISSGPSIHI-TISAGIAERC 228
           GG+EF         +      +A I+A  +R  +E ++  + +G + +  + S GI+   
Sbjct: 370 GGDEFVVMLEELGSEQEGAAVQAEIVAEKIR--LELARPYLLNGDTEYFRSASIGISLFF 427

Query: 229 HKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            +E  I  ++ +AD ALY AK +GRN +  F      T
Sbjct: 428 GQEKTIDILLKQADIALYKAKDAGRNAIRFFDTAMQTT 465


>gi|254559422|ref|YP_003066517.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens
           DM4]
 gi|254266700|emb|CAX22483.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL), with
           GAF and two PAS/PAC sensor domains [Methylobacterium
           extorquens DM4]
          Length = 1028

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 61/208 (29%), Positives = 93/208 (44%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           EY  V     V+        L  +  SI + E   S  RI+ ++R D L+GL N + F  
Sbjct: 541 EYTWVLGRGRVVARDEQGAPLRMVGTSIDITERKASEQRIAYMARHDVLTGLPNRTVFHE 600

Query: 121 SLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L            + +++  D+D FK IND  GHP GD+++  ++ +L         V 
Sbjct: 601 HLEQRLAEVRRGRGQAALLCLDLDRFKSINDMLGHPAGDELLCQIATRLRATVRGGDVVV 660

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKE 231
           RLGG+EFA         ++A++LA  +   +   Q     G  + + IS GIA    + +
Sbjct: 661 RLGGDEFAIIVSHLDHARQASVLAQRVIDAV--GQPLDLGGHLVTVGISIGIAFAPTNGD 718

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
              T+   AD ALY AK S RN    + 
Sbjct: 719 TSETLFKNADLALYRAKASARNTYCFYE 746


>gi|194439573|ref|ZP_03071646.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 101-1]
 gi|194421482|gb|EDX37496.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 101-1]
 gi|332343681|gb|AEE57015.1| cellulose synthesis regulatory protein [Escherichia coli UMNK88]
          Length = 558

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYEFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 536 LADRRLYLAKQAGRNRV-FASD 556


>gi|117920874|ref|YP_870066.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117613206|gb|ABK48660.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 329

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 14/182 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQIN 143
            + + L  + +   +L+  D L+ L N  AF            + L+ + FDID+FK+IN
Sbjct: 146 QMEQALIEAKSTAERLADTDELTQLYNRRAFFNLGRQIAQQTAQPLAFIMFDIDHFKRIN 205

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH +GD  +  ++        T   + RLGGEEF      +  ++A  +A  +R   
Sbjct: 206 DRWGHAMGDAALIHIARLTQTKLRTNDILARLGGEEFGLILPNTHHEQAWQVAESIRHGF 265

Query: 204 ENSQINISSGPSIHITISAGIAE--------RCHKEP-ISTIIYRADQALYVAKKSGRNR 254
           +   + + +G SIH T S GI+             +  + T+   ADQA+  AK++GRN+
Sbjct: 266 DTQPLQL-NGHSIHCTASFGISSLVLPQINHPDEAQTLLETLFNNADQAMMQAKRAGRNQ 324

Query: 255 VV 256
           V 
Sbjct: 325 VC 326


>gi|228936701|ref|ZP_04099492.1| GGDEF domain protein [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228822910|gb|EEM68751.1| GGDEF domain protein [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 351

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 110/230 (47%), Gaps = 18/230 (7%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI---SGSILKE 92
           S+F   + F  N++  +I   P      +L +++S+V++ +  S +  YI   S + + +
Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLS----MLFKDMSIVVLYLVCSSVAAYITFISANYVLQ 179

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
               + ++ Q + ID L+GL N   F   +  +       N  L ++  DID+FK +ND 
Sbjct: 180 SNELFQKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSVNDT 239

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GHP GD+V+  +   L  V   P    R GGEEFA             +   +R  +E 
Sbjct: 240 YGHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAAVEK 299

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               +  G  I IT+S GI+    ++     I  AD ALY +K++GRN+V
Sbjct: 300 HSFQLLDGTKIKITVSVGISVY--EQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|209884076|ref|YP_002287933.1| diguanylate cyclase [Oligotropha carboxidovorans OM5]
 gi|209872272|gb|ACI92068.1| diguanylate cyclase [Oligotropha carboxidovorans OM5]
          Length = 493

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 93/207 (44%), Gaps = 16/207 (7%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +  +  ++  L L++ +  I     ++    +     +  R++QL+  D L+G+ N   F
Sbjct: 283 WWRQVFIIGGLMLMLSAFVIG--AAFLLAREMARRADAEQRLAQLATTDALTGIDNRRRF 340

Query: 119 ISSLGSYNE------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MF 171
              +            LS++  D D+FK  ND FGH  GD+V+  ++  +      P   
Sbjct: 341 DERMLDEWRRGWQKLPLSLLMIDADHFKTFNDLFGHQEGDQVLVRIAKSIAQSSRRPADC 400

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
             R GGEEFA     +   +A  +A ++R  +E       +      T+S G+A      
Sbjct: 401 AARYGGEEFALLLPDTELDDAMRIAEEIRTRVERLSTEKWAT-----TVSIGVACVVPDM 455

Query: 232 PIST--IIYRADQALYVAKKSGRNRVV 256
             S+  +I  AD+ALY AK+ GRNR V
Sbjct: 456 AGSSRNLIEAADKALYQAKEQGRNRCV 482


>gi|191173333|ref|ZP_03034863.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli F11]
 gi|300994239|ref|ZP_07180794.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1]
 gi|190906450|gb|EDV66059.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli F11]
 gi|300304949|gb|EFJ59469.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1]
 gi|324013467|gb|EGB82686.1| diguanylate cyclase domain protein [Escherichia coli MS 60-1]
          Length = 558

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LLL  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G++  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 536 LADRRLYLAKQAGRNRV-FASD 556


>gi|323488320|ref|ZP_08093568.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis
           MPA1U2]
 gi|323397978|gb|EGA90776.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis
           MPA1U2]
          Length = 796

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 66/254 (25%), Positives = 112/254 (44%), Gaps = 27/254 (10%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY-ISGSILK- 91
           +FS+ I  ++          GL    G+   L+    +  I     LL  Y    S+L+ 
Sbjct: 278 YFSLMILFIVMTLEQKEDMTGLIIGAGIAAFLILTRQIFTIVDNQRLLSNYNQLTSVLEH 337

Query: 92  --------------ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLS 130
                         +L  + +++  ++  D LSGL N   F+  L +        + KL+
Sbjct: 338 KIEQRTVEVTSSNNQLKETVHQMKHMAYHDILSGLPNRRLFLEKLEASIVEAKHKSHKLA 397

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +VF D+D FK IND FGH  GD ++   S +++    +   + R GG+EF        E+
Sbjct: 398 VVFIDLDRFKNINDTFGHEFGDLLLQAFSQRILDNLRSIDTLSRQGGDEFTLLLNAIKEE 457

Query: 191 -EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAK 248
            + A + + L+K +E   I    G  ++I++S GI+      +    ++  AD A+Y AK
Sbjct: 458 KDIAPIIHKLQKALEKPLI--IKGQELYISMSIGISVYPKDGDTTDELLKNADNAMYSAK 515

Query: 249 KSGRNRVVCFSDIE 262
           + GRN    FS   
Sbjct: 516 EKGRNNYQFFSKDM 529


>gi|296157609|ref|ZP_06840444.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia sp. Ch1-1]
 gi|295892381|gb|EFG72164.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia sp. Ch1-1]
          Length = 370

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 10/177 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+GL N       L +   +       L  +  D+D FK  N
Sbjct: 192 QQLLATNLELQRLTHSDGLTGLSNRRYLDQYLAAEWRRGTRDKAGLGFLMIDVDNFKAYN 251

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+V+  ++  +      +P    R GGEEFA    G+S     +LA  +R  
Sbjct: 252 DTYGHVAGDEVLKRVAQTVESCLGRSPDLAARFGGEEFAVVVPGTSAGGLRLLAEKIRMA 311

Query: 203 IENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IE+  I  +   S  +TIS G A       EP++ +I  AD  LY AK+ G+N+V  
Sbjct: 312 IEDLAIPHAGSASGVVTISIGAATLVPSAAEPVTKLIEAADVGLYRAKRDGKNQVAV 368


>gi|187777066|ref|ZP_02993539.1| hypothetical protein CLOSPO_00611 [Clostridium sporogenes ATCC
           15579]
 gi|187773994|gb|EDU37796.1| hypothetical protein CLOSPO_00611 [Clostridium sporogenes ATCC
           15579]
          Length = 565

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 111/238 (46%), Gaps = 14/238 (5%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
            I IA +  +  + +  I +      EY   +     +I   + +L  +  G  +K    
Sbjct: 129 GIIIACLASLIILIMDVICVPNLIINEYFEQD-----LILAGVFILTAWPLGFYVKVESE 183

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148
              ++  L   D L+ + NH  F  +L          NE LS++F DIDYFK  ND +GH
Sbjct: 184 HIKKLESLVNRDGLTDVYNHRFFHDALSKEIIECEEKNEALSMIFIDIDYFKHYNDLYGH 243

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GDKV+  + + L         V R GGEEFA     +SE+EA  +A  +R+ IE +  
Sbjct: 244 QKGDKVLKTIGEILKNNTREGDIVARYGGEEFAVLLPNTSEEEAINIAEKIRRKIEYTYF 303

Query: 209 N-ISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDIENN 264
               + P+ ++T+S GI+   +K      +I  AD ALY AK   +NRV  ++ I + 
Sbjct: 304 EGEENQPNGNLTVSMGISVYPYKAKSDMELIKSADDALYRAKFFNKNRVEAYTSILDE 361


>gi|91778946|ref|YP_554154.1| RNase II stability modulator [Burkholderia xenovorans LB400]
 gi|91691606|gb|ABE34804.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
          Length = 667

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 94/187 (50%), Gaps = 11/187 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYF 139
           SG+ + E  ++  R+++L+  D L+GL N +A    + +        E + ++F D+D F
Sbjct: 220 SGTDITEERLAQERLTELANTDSLTGLANRNAIQDRIRAAIEDATPGEAVGVLFLDLDNF 279

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND++GH  GD++I  +S  + +       + RLGG+EF   A   +  E  + A  +
Sbjct: 280 KKVNDHYGHVFGDRLIRDVSSAISLCLNEGDTLARLGGDEFIVLAARGTAHELEVTAQRI 339

Query: 200 RKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +E  +   S G   ++   S GIA    H + + ++I  AD A+YVAK  G+     
Sbjct: 340 ---LERMRTPFSLGLVEVYTGCSIGIARYPEHGDSLESLIRSADTAMYVAKDEGKRTHRV 396

Query: 258 FSDIENN 264
           FS   N 
Sbjct: 397 FSPEMNR 403


>gi|325282742|ref|YP_004255283.1| diguanylate cyclase [Deinococcus proteolyticus MRP]
 gi|324314551|gb|ADY25666.1| diguanylate cyclase [Deinococcus proteolyticus MRP]
          Length = 607

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 8/169 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            + Q S  D L+GL N   +   L        S  E LS++  D+D+FK+ ND FGH  G
Sbjct: 420 ELRQQSIRDALTGLYNRRYYEDHLAASVARALSSGEPLSLLALDVDHFKRFNDTFGHDAG 479

Query: 152 DKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D V+  +   L      T     R GGEEFA    G    EA   A+ LR  + +  +  
Sbjct: 480 DAVLVRVGAALREAAQRTGEAACRPGGEEFALLLPGVDAAEALRRADALRAEVASWTLKH 539

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +      +TIS G+A        +++  +AD+ALY AK++GRNRV+ +S
Sbjct: 540 AGLSLGRVTISVGVASLEQGGTPASLARQADEALYAAKRAGRNRVLAWS 588


>gi|309779289|ref|ZP_07674051.1| sensory box sensor/GGDEF/EAL domain protein [Ralstonia sp.
           5_7_47FAA]
 gi|308921847|gb|EFP67482.1| sensory box sensor/GGDEF/EAL domain protein [Ralstonia sp.
           5_7_47FAA]
          Length = 863

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 85/182 (46%), Gaps = 11/182 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E   +   I + +  D L+ L N   F + L          + +L+++F D+D FK+
Sbjct: 417 DMTEKKRAEEVIWRQANFDPLTELPNRHMFYNRLRHEIARARQASTQLALLFIDLDRFKE 476

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD ++  ++ ++  +      V RL G+EF        +  AA     +R 
Sbjct: 477 VNDTLGHDQGDVLLKEIARRISAIVRGTDTVARLAGDEFTIILPDLPDAGAAT--PIIRA 534

Query: 202 IIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++      +  G  S+ ++ S G+A      +   +++ RADQA++ AK +GRN+   F+
Sbjct: 535 LLARIAAPLQLGEESVEVSASIGVAMYPRDADSAESLLVRADQAMFAAKSAGRNQWAVFT 594

Query: 260 DI 261
             
Sbjct: 595 PA 596


>gi|152984322|ref|YP_001350017.1| hypothetical protein PSPA7_4673 [Pseudomonas aeruginosa PA7]
 gi|150959480|gb|ABR81505.1| hypothetical protein PSPA7_4673 [Pseudomonas aeruginosa PA7]
          Length = 651

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 10/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
             + +      ++ +++  D L+GL N  AF   LG           ++++++ D+D FK
Sbjct: 471 RDVSDQVAYQQQLLEMAYRDPLTGLGNRKAFEEQLGQALFRAGNGGAEIALLYLDLDRFK 530

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND FGH +GD ++  ++++L      P    RLGG+EFA     S     A LA  L 
Sbjct: 531 EVNDRFGHDIGDALLRTVAERLRNTLRQPDKAYRLGGDEFAVLLEDSQANSPARLAERLL 590

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +    I +       +T S GIA    H      ++  AD A+Y AK+  RNR   +
Sbjct: 591 AAL-VQPIALGGEHIDFVTPSIGIALYPRHAGDAEGLVRAADSAMYQAKRQ-RNRYCLY 647


>gi|114049136|ref|YP_739686.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sp. MR-7]
 gi|113890578|gb|ABI44629.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sp. MR-7]
          Length = 876

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 21/198 (10%)

Query: 79  SLLLGYISGSILKELFISYN---RISQLSRIDCLSGLLNHSAFISSLGSYN--------E 127
           +  L  ++  + KE+    N   ++   ++ D L+GL N + F+  L            E
Sbjct: 424 TTALAELNKDLEKEIRQRRNMEAKLVHDAKHDALTGLPNRAMFMERLNQAIKHVRRHTLE 483

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           + +++F D+D FKQIND  GH  GD+ +   + +L     +   + RLGG+EF       
Sbjct: 484 QFALLFIDLDRFKQINDTMGHLEGDRFLIETATRLRACIRSNDTLARLGGDEFVILLDSI 543

Query: 188 S-EQEAAILANDLRKIIENS----QINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
           +   +A  +A  + + I  S     I   SG SI ITIS         +   +++  AD 
Sbjct: 544 NGINDARDVAERVIQKISLSYTLGAIEFHSGASIGITIS-----GNKLDTSESMLRNADT 598

Query: 243 ALYVAKKSGRNRVVCFSD 260
           A+Y AK +G+   V F D
Sbjct: 599 AMYQAKANGKGCYVIFDD 616


>gi|23014126|ref|ZP_00053960.1| COG5001: Predicted signal transduction protein containing a
           membrane domain, an EAL and a GGDEF domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 679

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 114/258 (44%), Gaps = 16/258 (6%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITI 78
           L +   + F I   +  +++    IF+A      + L      E IL  +LS  + S  I
Sbjct: 182 LNTVLAYFFAILMLLSVALYFKLKIFVARPITNMVTLMQ----EIILHTDLSRRVESKGI 237

Query: 79  SLLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEK 128
              +  +S     +L+ +    +R+  LS  D L+ L N   F   L         +   
Sbjct: 238 IAEVADLSDYFNKLLRTVEDYQHRLEDLSIRDPLTRLYNRRKFDEFLDHEIDRSQRHGHP 297

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
             +   D+D FK IND FGHP+GD V+  L+  L         + R+G +EF+     ++
Sbjct: 298 FCVAQIDLDDFKNINDTFGHPIGDLVLKELASVLNREVRRTDMLARVGADEFSVLLPETT 357

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVA 247
            +E    A  +R+ I + Q+ +  G  + IT S G +    + +    +   AD A+Y A
Sbjct: 358 MEEGIAAAEKMRQAIADCQLGLPVG-GVRITASVGLVGYPENADDAQKLAIAADVAIYKA 416

Query: 248 KKSGRNRVVCFSDIENNT 265
           K+SG+N+V    + E+ T
Sbjct: 417 KRSGKNQVAVIGEGEDAT 434


>gi|302342105|ref|YP_003806634.1| diguanylate cyclase with PAS/PAC sensor [Desulfarculus baarsii DSM
           2075]
 gi|301638718|gb|ADK84040.1| diguanylate cyclase with PAS/PAC sensor [Desulfarculus baarsii DSM
           2075]
          Length = 344

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 12/179 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            +       + + +LS  D L+GL N   F S L         Y   LS++  D+D FK 
Sbjct: 155 DMTRRKQLEDELRRLSITDSLTGLYNRRQFHSVLHDETARACRYGRPLSLICLDLDNFKP 214

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            NDNFGH VGD ++  ++     V        R+GG+EF    + ++E  A I A+  R+
Sbjct: 215 FNDNFGHQVGDSILQLVATCARGVLRGQDTAFRVGGDEFCLLMVETNEDNATIAADRFRR 274

Query: 202 IIENSQI----NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              +        +  G    + +S G+A+    E   +++ RAD A+Y AK++G NR V
Sbjct: 275 AFNDQWPIAMSFLHKGME-PVYMSLGVAQLQPGEKPDSLLMRADLAMYEAKRAGGNRSV 332


>gi|218675284|ref|ZP_03524953.1| putative sensory box/GGDEF family protein [Rhizobium etli GR56]
          Length = 355

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 92/183 (50%), Gaps = 8/183 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKL-----SIVFFDIDYFKQIN 143
           + ++    +   +++  D L+ L N  AF   L + +N        +++  DID FK+IN
Sbjct: 162 MDQVRKELDEYKRIANTDSLTRLSNRRAFDDRLAAVFNNPGMRPVTALLLADIDNFKKIN 221

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHPVGDK++A ++  +       +FV R GGEEFA    G++ +E   +A  +R+ +
Sbjct: 222 DTYGHPVGDKILATVASVIRSNVRRDVFVARAGGEEFALIIEGNTVEEVTAIAERIRRTL 281

Query: 204 ENSQINISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E +    S     +  IT S GI    + E    +  + D ALY AK +GRN +V + D 
Sbjct: 282 ETTPFKNSRTRVNYGPITASIGICMASNAEDAGELYSKTDIALYGAKNAGRNCIVLYQDG 341

Query: 262 ENN 264
              
Sbjct: 342 MQK 344


>gi|24375806|ref|NP_719849.1| GGDEF domain-containing protein [Shewanella oneidensis MR-1]
 gi|24350756|gb|AAN57293.1|AE015865_7 GGDEF domain protein [Shewanella oneidensis MR-1]
          Length = 876

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 15/195 (7%)

Query: 79  SLLLGYISGSILKELFISYN---RISQLSRIDCLSGLLNHSAFISSLGSYN--------E 127
           +  L  ++  + KE+    N   ++   ++ D L+GL N + F+  L            E
Sbjct: 424 TTALAELNKDLEKEIRQRRNMEAKLVHDAKHDALTGLPNRAMFMERLNHAIKHVRRHSLE 483

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           + +++F D+D FK IND  GH  GD+ +   + +L     +   + RLGG+EF       
Sbjct: 484 QFALLFIDLDRFKLINDTMGHLEGDRFLIETATRLRSCIRSNDTLARLGGDEFVILLDTI 543

Query: 188 SE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245
           ++  +A  +A  + + I  S          H   S GI    +K +   +++  AD A+Y
Sbjct: 544 NDMNDARDVAERVIRKISQS--YHFGTIEFHSGASIGITISGNKLDTSESMLRNADTAMY 601

Query: 246 VAKKSGRNRVVCFSD 260
            AK +G+   V F D
Sbjct: 602 QAKANGKGCYVIFDD 616


>gi|124515977|gb|EAY57486.1| Diguanylate cyclase [Leptospirillum rubarum]
          Length = 380

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 4/168 (2%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-LSIVFFDIDYFKQINDNFGHPVG 151
           L     ++S+ + ID L+G+LN       L    +  LS++ FD+D FK IND +GH  G
Sbjct: 209 LQKHNRKVSREANIDPLTGILNRRGLQHRLSFLKDPVLSLLIFDLDDFKAINDTYGHNAG 268

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++  +  +        R GG+EF          +A  +A  +R  I      + 
Sbjct: 269 DEVLRKIAQGVRTLVRKVDLFSRFGGDEFIVVMPALEISQARFVAERIRSTIARMPFLVG 328

Query: 212 SGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +G S+ IT S G+          +  ++  AD ALY AK  G+N++  
Sbjct: 329 TG-SVTITASFGLTGTYVDGAHKMDDLLELADSALYQAKSQGKNQICA 375


>gi|221066878|ref|ZP_03542983.1| diguanylate cyclase [Comamonas testosteroni KF-1]
 gi|220711901|gb|EED67269.1| diguanylate cyclase [Comamonas testosteroni KF-1]
          Length = 264

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 84/164 (51%), Gaps = 9/164 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+GL N   F S +    ++++       ++  DID+FKQIND  GH  GD V+
Sbjct: 53  LSLRDPLTGLANRRHFRSVIEREIDRVARSGETALLLMLDIDHFKQINDEHGHIAGDMVL 112

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L  +      + R GGEEFA         +   +A  LR+ IE++ I +SSG  
Sbjct: 113 QSVAQTLSEIIRPMDTLARFGGEEFAIVLPVCPAHQGRAVAERLRQAIEDNSIAVSSGQM 172

Query: 216 IHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +T+S G   A++  +        RAD+ LY+AK +GRN V  
Sbjct: 173 LKVTVSIGGVYAQQWIRSTAQLWTERADRQLYLAKSAGRNCVCV 216


>gi|17231091|ref|NP_487639.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17132732|dbj|BAB75298.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 344

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 61/183 (33%), Positives = 90/183 (49%), Gaps = 11/183 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           + K+L  +   +  L+ +D L+GL N   F + L             LS++  DIDYFK 
Sbjct: 160 VYKQLEAANMALQHLANVDGLTGLANRRRFDNYLNTQWINLVQEGAPLSLILCDIDYFKF 219

Query: 142 INDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND +GHP GD  +  +   L          V R GGEEFA     +  + A  +A+ ++
Sbjct: 220 YNDQYGHPTGDICLQKVGAVLSYKAQKHQDLVARYGGEEFAVVMPYTHAKGAIYVAHAIQ 279

Query: 201 KIIENSQINIS-SGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
             + + QI    S  S HIT+S G+A      +   S +I  AD+ALY AK+SGRNR+  
Sbjct: 280 TSVRDLQIAHDKSAVSQHITLSMGVATITPTWESSPSDLIAAADKALYKAKESGRNRICQ 339

Query: 258 FSD 260
           + D
Sbjct: 340 WED 342


>gi|16760930|ref|NP_456547.1| hypothetical protein STY2194 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29141378|ref|NP_804720.1| hypothetical protein t0891 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213053044|ref|ZP_03345922.1| hypothetical protein Salmoneentericaenterica_09073 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213424988|ref|ZP_03357738.1| hypothetical protein SentesTyphi_04385 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213650737|ref|ZP_03380790.1| hypothetical protein SentesTy_28024 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|20140617|sp|Q8Z5R0|YEDQ_SALTI RecName: Full=Cellulose synthesis regulatory protein
 gi|25512058|pir||AC0754 probable membrane protein STY2194 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503227|emb|CAD05734.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137005|gb|AAO68569.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 567

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 100/203 (49%), Gaps = 11/203 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+    T  LL+ + +   ++K +F+  N     +  D L+ L N  A          
Sbjct: 359 LTLLWGLFTAMLLISWGVIRHMVKNMFVLQNSPQWQAWHDPLTRLYNRGALFEKASRLAK 418

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 +  S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 419 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 478

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 479 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 538

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
            AD+ LY AK+SGRNR+ C SD 
Sbjct: 539 LADKRLYYAKQSGRNRI-CASDA 560


>gi|88797066|ref|ZP_01112656.1| Bacteriophytochrome (light-regulated signal transduction histidine
           kinase) [Reinekea sp. MED297]
 gi|88779935|gb|EAR11120.1| Bacteriophytochrome (light-regulated signal transduction histidine
           kinase) [Reinekea sp. MED297]
          Length = 324

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 70/262 (26%), Positives = 116/262 (44%), Gaps = 35/262 (13%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
            + FS F  IF+  +  +  +   + G     GL  +L   +S+    +T++LL   IS 
Sbjct: 63  FLMFSAF--IFLCGLTHLIALINIWHGYYFIEGLAKVLTGIVSISTACMTLALLPKAISM 120

Query: 88  -------SILKELFISYN------------------RISQLSRIDCLSGLLNHSAFISSL 122
                   + ++L  +                     + +L+  D L+ LLN  A ++ L
Sbjct: 121 PSRKSMLQMNRQLKTAKEDLLDLTEQLERKVTERTIALEKLAVTDELTDLLNRRAVMARL 180

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                    Y +  S++  D+DYFK IND +GHP+GD+V+   +D L         VGR+
Sbjct: 181 TGQLQLARRYGKPFSLMMCDLDYFKSINDTYGHPIGDEVLTVFADHLKQATREVDSVGRV 240

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INISSGPSIHITISAGIAERCHKEPIS 234
           GGEEF      +   EA  +A  L +   + + ++   G  I  + S G+ +    +   
Sbjct: 241 GGEEFLILFPETPLAEAITVAERLCERCRDDRTVSAYDGTVITFSCSIGVVQCNADDSEK 300

Query: 235 TIIYRADQALYVAKKSGRNRVV 256
           T++ R D ALY AK SGR+ V 
Sbjct: 301 TLLNRVDVALYDAKASGRDTVA 322


>gi|120597606|ref|YP_962180.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|146294255|ref|YP_001184679.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
 gi|120557699|gb|ABM23626.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|145565945|gb|ABP76880.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
 gi|319427617|gb|ADV55691.1| diguanylate cyclase [Shewanella putrefaciens 200]
          Length = 362

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 122/247 (49%), Gaps = 12/247 (4%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIF--LFYIGLTPFYGLEYILVENLSLVIISI 76
           L +  P    I+  +F+ +  A +I +  +   +++I   P+Y     ++     + +  
Sbjct: 114 LATIPPSFASIFKPLFYKLIQALIIIVFFLICDIWFIDYEPYYLYSDEMISLFRHINVLG 173

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKL 129
             +LL G +S +  + +  +   +  ++  D L+GL+N  +  + +          +  +
Sbjct: 174 ACALLAG-VSYAYSQIVMSAITALRNVANTDELTGLINRRSLTALIDREAARTLRTHASM 232

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S+V  DIDYFK+IND++GH  GD V+  +++ L  V      V R GGEEF      +  
Sbjct: 233 SLVLCDIDYFKRINDSYGHAAGDHVLVNVANLLQGVLREYDVVARWGGEEFLLLLPNTDI 292

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            EA  +A  LR+I+  S ++     +I +T++ G+A     E   + + RAD+ALY  K+
Sbjct: 293 IEAMKVAERLREIVACSHLSFEE-QTIPVTMTLGVAVL-GDENWHSTLARADEALYRGKR 350

Query: 250 SGRNRVV 256
            GRN VV
Sbjct: 351 QGRNCVV 357


>gi|317405519|gb|EFV85826.1| signaling protein [Achromobacter xylosoxidans C54]
          Length = 687

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 13/221 (5%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLS 110
           G++  +    +    LS++ I++ +++L   L   + ++   L  +   + QL+  D L+
Sbjct: 211 GISAGWLAIAVTAVTLSVLAIALVVAVLDNRLEARTSALASSLAEANEELVQLALHDTLT 270

Query: 111 GLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            L N       L    E         +++FFD+D FK +ND +GH  GD ++  L+ ++ 
Sbjct: 271 KLPNRILLEDRLEQAIESASRRKGYFAVLFFDLDGFKAVNDAYGHHTGDALLIDLAQRIR 330

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
               T   V RLGG+EF   +      +AA +A+ L + I    +    G  + +T S G
Sbjct: 331 QTLRTQDTVARLGGDEFIVLSEVVEPTDAANVADRLIEAIARPVMVY--GHEVLVTSSVG 388

Query: 224 IAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           IA      E    ++  AD A+Y AK+ G      F    N
Sbjct: 389 IAIYPNDGEDTHALLTNADAAMYHAKRLGGTGYSFFEPSMN 429


>gi|317493110|ref|ZP_07951534.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919232|gb|EFV40567.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 395

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 66/272 (24%), Positives = 124/272 (45%), Gaps = 30/272 (11%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFY-------IGLTPFYGLEYIL 65
           L     + S+    F++++ + F+  ++ ++ +  +   Y       + +TP + L  +L
Sbjct: 123 LMTISLMWSYCSFYFIVWWQLPFAWPLSVILMLTALAALYYHPLALLLFITPLW-LTTLL 181

Query: 66  VE-------NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDC 108
                    N+  +++ + ++ +L Y   I      E ++ Y        R+  ++  D 
Sbjct: 182 ASVQLNQGVNIRFLLVWLLLTAILIYGRVILQRWFNEAWLRYQENRMLIARLDVMAHQDV 241

Query: 109 LSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           L+G  N  +  + L       E  +++  D+DYFK+ ND++GH  GD  +  ++D +   
Sbjct: 242 LTGTANRRSMENFLDDALLQAEPFALLMLDVDYFKRYNDHYGHQAGDACLVKVADIVKTS 301

Query: 166 FGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAG 223
             TP   V R GGEEF      SS  +A  +A  ++  +    +  ++   S  +T+S G
Sbjct: 302 VRTPADLVARYGGEEFVIVLPASSLDDAVRVAERIQTNLREISLPHAASEVSEMVTVSMG 361

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           I      +    II RAD+ALY AK+ GRNR 
Sbjct: 362 ITLSKDGDSAYGIIARADEALYRAKQQGRNRW 393


>gi|213971020|ref|ZP_03399141.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
 gi|301385583|ref|ZP_07234001.1| GGDEF domain protein [Pseudomonas syringae pv. tomato Max13]
 gi|302058833|ref|ZP_07250374.1| GGDEF domain protein [Pseudomonas syringae pv. tomato K40]
 gi|302132138|ref|ZP_07258128.1| GGDEF domain protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213924256|gb|EEB57830.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
          Length = 677

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 84/184 (45%), Gaps = 11/184 (5%)

Query: 82  LGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           L     S+ +E            Q + ID L+ L N +A+   L             L +
Sbjct: 492 LASRVASMEQEALGFRTHLEEQRQKALIDPLTSLPNRAAWGERLEQEMADWQRDKNSLLV 551

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK+IND +GH  GDKV+  +++          F+ R GGEEF      +    
Sbjct: 552 CILDLDHFKRINDGYGHLAGDKVLKIVANVFKKRLRPADFLARFGGEEFVMLLPATLLGA 611

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              L ++LR  +E    +   G  + IT+S G+      E   T I RADQALY AK++G
Sbjct: 612 GLTLLDELRTAVELCPFHFK-GERVTITVSIGVTALRTGERSDTAIKRADQALYRAKENG 670

Query: 252 RNRV 255
           RNRV
Sbjct: 671 RNRV 674


>gi|163759328|ref|ZP_02166414.1| putative transcription regulator (with tandem n-terminal response
           regulator domains) protein [Hoeflea phototrophica
           DFL-43]
 gi|162283732|gb|EDQ34017.1| putative transcription regulator (with tandem n-terminal response
           regulator domains) protein [Hoeflea phototrophica
           DFL-43]
          Length = 457

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 82/164 (50%), Gaps = 9/164 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           + +  D L+GL N     + L          +  LS++  DID+FK IND  GH  GD +
Sbjct: 290 EFAVTDALTGLNNRRYLDTHLNTLVERSAKRDRPLSVLITDIDHFKSINDVHGHEGGDDI 349

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSG 213
           +   + ++           R GGEEF      ++   AA +A  LR  +  +   + +SG
Sbjct: 350 LRDFARRVRGAVRGADLACRYGGEEFVVIMPDTTLDVAAQIAERLRDAVAAAPFKVAASG 409

Query: 214 PSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVV 256
            ++ +T S GIA      E  ++++ RADQALY AK SGRNRVV
Sbjct: 410 ANVTLTTSVGIAALEPSGEDSASLLRRADQALYQAKSSGRNRVV 453


>gi|146293015|ref|YP_001183439.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella putrefaciens CN-32]
 gi|145564705|gb|ABP75640.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella putrefaciens CN-32]
          Length = 1028

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 84/182 (46%), Gaps = 10/182 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDY 138
           + + + +L      + +++  D L+GL N    +        ++       ++ F D+D 
Sbjct: 567 TQADITQLKNHEAELDKVANYDALTGLPNRRLLLDRFKQAISRVNRDGRLCAVCFLDLDG 626

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND++GH VGD+++  + D L  +      + R+GG+EF A     SE E   +   
Sbjct: 627 FKAVNDHYGHDVGDQLLVAIVDNLSKIMREQDTLARVGGDEFVALFDICSEAECTQVLER 686

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           +   I+  Q  +    ++ ++ S G++           ++  AD A+Y+AK +G+N    
Sbjct: 687 MLCAID--QTVLIGDKNLRLSASIGVSLYPEDNVDPDILLRHADHAMYMAKAAGKNCFQM 744

Query: 258 FS 259
           F 
Sbjct: 745 FD 746


>gi|320105855|ref|YP_004181445.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Terriglobus
           saanensis SP1PR4]
 gi|319924376|gb|ADV81451.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Terriglobus saanensis SP1PR4]
          Length = 696

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 87/173 (50%), Gaps = 11/173 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            ++  +  D ++ L N       +         + +K +++F D+D+FK IND+ GH VG
Sbjct: 267 EMTYAAHHDAVTALPNRLLLNDRISHAITTAQRHKQKFAVMFVDLDHFKSINDSLGHAVG 326

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINI 210
           DK++  ++ +L         VGR GG+EF        E+ ++ I A  +   +  S+  +
Sbjct: 327 DKLLQAVAKRLQASVRASDTVGRHGGDEFIVLLPEIEEENDSEISAKKILAAL--SEPFL 384

Query: 211 SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
               ++ IT + GI+      +  +++I  AD A+Y AK++GR++V  FSD  
Sbjct: 385 FDDVTLQITATIGISIYPRDGKDANSLIQNADLAMYEAKENGRDQVHFFSDEM 437


>gi|264678991|ref|YP_003278898.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           CNB-2]
 gi|262209504|gb|ACY33602.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           CNB-2]
          Length = 458

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 83/184 (45%), Gaps = 12/184 (6%)

Query: 81  LLGYISGS-ILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIV 132
           +  Y+S S  + +L      +   +  D L+GL N SA                   +++
Sbjct: 248 ITHYVSISKDISDLVQREQELLVRAYRDDLTGLPNRSAGSYELENCQRIAERQGVPYALI 307

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D FKQ+ND FGH  GD+V+  ++  L     +   V R GGEEF     G   Q A
Sbjct: 308 MCDVDLFKQVNDQFGHEAGDQVLQQIAKVLRNTVRSSEHVARWGGEEFLIIVPGVGLQAA 367

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             LA  LR+ I +     +      IT+S G+      E  + ++ R D ALY AK SGR
Sbjct: 368 LELAERLRRSIASHSYAAAG----TITMSFGVGSWQAGEASAQLLRRTDMALYRAKSSGR 423

Query: 253 NRVV 256
           N+V 
Sbjct: 424 NQVR 427


>gi|257485985|ref|ZP_05640026.1| GGDEF [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|298486063|ref|ZP_07004133.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298159411|gb|EFI00462.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|330988649|gb|EGH86752.1| hypothetical protein PLA107_26732 [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331010305|gb|EGH90361.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 358

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 10/225 (4%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
              + +    L P   L   + +  + + + +   + +G++S  +  +L+   N + ++S
Sbjct: 125 ALGVLISLALLNPAVNLHGNMAQIYACLPVLVIYPIFIGWMSHQVTLKLWEHRNILRKIS 184

Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           R D L+GLLNH A+   L        + +++  I   DID+FK IND +GH +GD V+  
Sbjct: 185 RTDSLTGLLNHGAWKDLLDLEYVKSQNQHQQCVIALIDIDHFKVINDTYGHLMGDTVLQN 244

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +S+ L+        +GR GG+EF      +   +A  +    R  I+    ++     + 
Sbjct: 245 ISEALMENLRDSDLIGRCGGDEFCVILPDTHLFQAREILERTRLAIDEMTYSLQ--RDLK 302

Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +++S GIA    +    S+ ++ AD+ALY+AK +GRN V    D+
Sbjct: 303 VSLSIGIAAYSPELPDASSWLHEADKALYLAKSTGRNCVASAQDM 347


>gi|170721971|ref|YP_001749659.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619]
 gi|169759974|gb|ACA73290.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619]
          Length = 695

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 105/219 (47%), Gaps = 14/219 (6%)

Query: 60  GLEY-ILVENLSLVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLSGLLNH 115
           GL Y +L+  L+++ +++  S+L   L   +  + + L ++   ++QL+  D L+GL N 
Sbjct: 215 GLVYLVLITTLAVLAVALLTSVLDARLEARTAELARSLTLANQELTQLALHDTLTGLPNR 274

Query: 116 SAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
           +     +     K        +++F D+D FK +ND FGH VGD ++  ++ +L     +
Sbjct: 275 TLLSDRIEQAIGKVAEQGGCFALMFIDLDGFKPVNDAFGHHVGDLLLKAVAARLRGHLHS 334

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
              + R+GG+EF          +A  +A  ++++   S+    +   + +T S GI    
Sbjct: 335 QDTLARIGGDEFVLLVELQEPADAMDVA--VKQVNLVSRAFRVAEHDLQLTASLGIVLYP 392

Query: 229 -HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            + +    ++  AD A+Y AK +G+N    F    N+  
Sbjct: 393 GNGQDQLELLRNADAAMYHAKSAGKNGYSFFDASMNSNA 431


>gi|34557608|ref|NP_907423.1| hypothetical protein WS1243 [Wolinella succinogenes DSM 1740]
 gi|34483325|emb|CAE10323.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 480

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 85/177 (48%), Gaps = 8/177 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
            S ++EL     R  + + ID L+G+        SL         Y  + S+ FFDID+F
Sbjct: 301 QSKIEELTQELCRAQEEASIDSLTGVHTRRFLEESLSRFEALFLRYESRYSVAFFDIDFF 360

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND +GH  GD+V+A     L           R GGEEF       +  EA   A  +
Sbjct: 361 KKINDKYGHEAGDRVLATFGRLLKQSVRQEDIAARYGGEEFIVILPEMNLVEAWRFAERI 420

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R ++E S + +     I +++S GIAER   E    +I  AD  LY AK+ GRN++ 
Sbjct: 421 RALVERS-VFVYQDMRIKVSVSGGIAERSECEDRKALIKFADARLYEAKEGGRNQIR 476


>gi|113968721|ref|YP_732514.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sp. MR-4]
 gi|113883405|gb|ABI37457.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sp. MR-4]
          Length = 876

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 21/198 (10%)

Query: 79  SLLLGYISGSILKELFISYN---RISQLSRIDCLSGLLNHSAFISSLGSYN--------E 127
           +  L  ++  + KE+    N   ++   ++ D L+GL N + F+  L            E
Sbjct: 424 TTALAELNKDLEKEIRQRRNMEAKLVHDAKHDALTGLPNRAMFMERLNQAIKHVRRHSLE 483

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           + +++F D+D FKQIND  GH  GD+ +   + +L     +   + RLGG+EF       
Sbjct: 484 QFALLFIDLDRFKQINDTMGHLEGDRFLIETATRLRACIRSNDTLARLGGDEFVILLDSI 543

Query: 188 S-EQEAAILANDLRKIIENS----QINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
           +   +A  +A  + + I  S     I   SG SI ITIS         +   +++  AD 
Sbjct: 544 NGINDARDVAERVIQKISLSYTLGAIEFHSGASIGITIS-----GNKLDTSESMLRNADT 598

Query: 243 ALYVAKKSGRNRVVCFSD 260
           A+Y AK +G+   V F D
Sbjct: 599 AMYQAKANGKGCYVIFDD 616


>gi|296447498|ref|ZP_06889421.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylosinus trichosporium OB3b]
 gi|296254965|gb|EFH02069.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylosinus trichosporium OB3b]
          Length = 825

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 11/186 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK-LSIVFFDIDYFK 140
            + E   +  RI+ L+  D L+GL N + F       +  L   +   + +++ D+D FK
Sbjct: 381 DVTEQREAAARIAHLAHHDPLTGLANRTLFRLRLSEGLERLDETSAPGIGVLYLDLDGFK 440

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GHPVGD+++  ++++L  +      V R+GG+EFA    G+   EA  LA  + 
Sbjct: 441 DVNDAYGHPVGDRLLVAVAERLRRLLPQGDLVARVGGDEFALVQCGADRDEAERLACVVV 500

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +  +      G  ++I  S G++   +  +   T++  AD ALY AK  GR     F 
Sbjct: 501 EALSRT--YEIDGHQVNIGASVGVSVAPNDSDDADTLLKNADIALYRAKADGRGVHRFFE 558

Query: 260 DIENNT 265
                T
Sbjct: 559 PQMAAT 564


>gi|221196391|ref|ZP_03569438.1| diguanylate cyclase [Burkholderia multivorans CGD2M]
 gi|221203063|ref|ZP_03576082.1| diguanylate cyclase [Burkholderia multivorans CGD2]
 gi|221176997|gb|EEE09425.1| diguanylate cyclase [Burkholderia multivorans CGD2]
 gi|221182945|gb|EEE15345.1| diguanylate cyclase [Burkholderia multivorans CGD2M]
          Length = 492

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 8/184 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFD 135
             I    +    ++   I  L+R D L+GL N     + L     +       +++++ D
Sbjct: 298 AVIIVEDVTARRLTEQHIRHLARHDALTGLPNRHELHAELERMLSRPRRPDTAVAVMYLD 357

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D FK IND FGH  GD+++  ++++L           R+GG+EF  A   ++    + +
Sbjct: 358 LDGFKAINDRFGHQAGDELLTQVAERLGRTLRDGTLAARIGGDEFVVAVDDTTMDACSRV 417

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A  L   I ++   +S G ++   IS GIA          +I +AD ALY AK +G+ R 
Sbjct: 418 AAQLIAQI-SAPYTLSIGETVRFGISIGIALDDGHGTPDELIRQADSALYDAKSAGKGRY 476

Query: 256 VCFS 259
             +S
Sbjct: 477 RFYS 480


>gi|257058345|ref|YP_003136233.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Cyanothece sp. PCC 8802]
 gi|256588511|gb|ACU99397.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Cyanothece sp. PCC 8802]
          Length = 455

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 12/185 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDI 136
           +    + E  +   ++ + +  D L+ L N   F   L    E+         +++F D+
Sbjct: 253 VIFRDITEQKLMNQKLHRQAFYDPLTNLPNRRWFYERLIDAIERVKRNPTYLFAVLFLDL 312

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAIL 195
           D FK IND+ GHP+GD+++  ++ +L  V  +   + R GG+EFA       S +EA  +
Sbjct: 313 DRFKVINDSLGHPIGDRLLTSVASRLRNVLRSIDTISRFGGDEFAILLENIHSSEEAIQI 372

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNR 254
           A  + KI++     +  G  +    S GI        +   +I  AD A+Y AK  G+  
Sbjct: 373 AQRIHKILQV--PFLIDGKEVLTNTSIGIVLSSTDYSLPDDLIRDADIAMYRAKAKGKGC 430

Query: 255 VVCFS 259
              F 
Sbjct: 431 YEIFD 435


>gi|149187425|ref|ZP_01865723.1| hypothetical protein VSAK1_17917 [Vibrio shilonii AK1]
 gi|148838961|gb|EDL55900.1| hypothetical protein VSAK1_17917 [Vibrio shilonii AK1]
          Length = 698

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 96/190 (50%), Gaps = 13/190 (6%)

Query: 81  LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132
           LL YI     + +      ++ +++  D L+ L N S   S L         ++E+ + +
Sbjct: 250 LLHYICVFEDISKQKAHEEKLRKMAFFDPLTNLPNRSHLTSILEQSIEGGQRHSEQFATL 309

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F D+D+FK IND+ GH  GD++++ ++D+L  V      +GR+GG+EF         +  
Sbjct: 310 FLDLDHFKHINDSKGHLYGDRLLSQVADRLTDVLHHRASIGRIGGDEFVIILTDYDSE-- 367

Query: 193 AILANDLRKI--IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
           A L + + +   + N    + S  S+ ++ S G+A      +   T++  AD A+Y+AKK
Sbjct: 368 AQLLDTIDETLGVFNRPFELDSQESLRVSGSIGVALYPQDGQNSETLLKNADTAMYLAKK 427

Query: 250 SGRNRVVCFS 259
           +GRN    +S
Sbjct: 428 NGRNGYAFYS 437


>gi|330985269|gb|EGH83372.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 960

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 11/194 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI----- 131
           T ++LL        +EL  +  R+   +  D L+GL N S     L    +   +     
Sbjct: 507 TANVLLEARVRDRTRELDQANARLQHENSHDSLTGLPNRSHLQHRLKQAWQDFCLNGQQL 566

Query: 132 --VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
             +F D+D FK IND+ GH  GD ++   +++L         + RLGG+EFA  ++ +  
Sbjct: 567 IVMFIDLDRFKMINDSLGHHCGDILLVQAAERLRSCMREGDLLARLGGDEFAVLSIDAPL 626

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
           Q    +A  +    E  Q  +    S+  + S G+  A+    +  + ++  AD A+Y  
Sbjct: 627 QAGTDIAQRILTAFE--QPFVIDDHSVFSSCSIGVVGADSRFHQEPADLLRDADTAMYRV 684

Query: 248 KKSGRNRVVCFSDI 261
           K  GR+    F+  
Sbjct: 685 KNGGRDSFAVFNQA 698


>gi|167590007|ref|ZP_02382395.1| diguanylate cyclase [Burkholderia ubonensis Bu]
          Length = 518

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 91/208 (43%), Gaps = 15/208 (7%)

Query: 63  YILVENLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSA 117
           Y    + ++ I S  + L LG++  S+L     +    +   +  L+R D L+GL N   
Sbjct: 298 YAAWYDRAIPIGSAMVLLALGFVGLSLLLDVQLRRRHRAEAELRALARTDGLTGLDNRRM 357

Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
              +L     +       LS++F D+DYFK+ ND  GH  GD  +A +   L      P 
Sbjct: 358 LDLTLEREWRRAARSQHALSLLFVDVDYFKRYNDTQGHQAGDDALAAVGRCLAGCLRRPA 417

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--R 227
            +  R GGEEF     G     AA +A  +R  I    I   +     +T S G+     
Sbjct: 418 DYAARYGGEEFVVILPGVDASGAAAVAETIRASIHELGIRHDASEFGRLTASIGVTTCFP 477

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRV 255
                +   + RAD AL+ AK+ GRN+V
Sbjct: 478 EWDGSVHAALKRADDALFRAKERGRNQV 505


>gi|323152714|gb|EFZ38986.1| cellulose synthesis regulatory protein [Escherichia coli EPECa14]
          Length = 558

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLHWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 536 LADRRLYLAKQAGRNRV-FASD 556


>gi|312879189|ref|ZP_07738989.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM
           12260]
 gi|310782480|gb|EFQ22878.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM
           12260]
          Length = 576

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 82/175 (46%), Gaps = 12/175 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           ++EL      + + + +D L+  LN  +    L         Y   L+++  DID FK I
Sbjct: 406 VEELDEKMEELRRSASLDPLTEALNRRSIERELMAETRRADRYGNPLTVILCDIDRFKSI 465

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +   S  +     T    GR GGEEF   A       AA LA  LR  
Sbjct: 466 NDRYGHQEGDCALRAFSRIVRGCLRTGDHFGRWGGEEFLVVAPVDGPGGAA-LAEKLRLE 524

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +E     ++    +  T S G+A     EP  T++ RAD+A+Y AK+SGRNRV  
Sbjct: 525 LE----TVTRATPVPFTASFGVAVYVPGEPPETLVQRADEAMYRAKESGRNRVEV 575


>gi|304396473|ref|ZP_07378354.1| diguanylate cyclase [Pantoea sp. aB]
 gi|304355982|gb|EFM20348.1| diguanylate cyclase [Pantoea sp. aB]
          Length = 365

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 69/253 (27%), Positives = 118/253 (46%), Gaps = 20/253 (7%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL-LLGY-- 84
            +  S+   +F++ +     +  F + + P      +L     L +I +TI L L+G+  
Sbjct: 102 FLIISLISVLFVSAIALSDYLGAFCLHVAPPVLTVLLLDNGQHLPLILLTIMLPLIGFSL 161

Query: 85  ----------ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---- 130
                      +  ++ +L+      S LS +D L+GL N     + L +  E  +    
Sbjct: 162 QHLMRRRADNFTLRLMHQLYEEKETFSDLSMLDPLTGLYNRRGLKNRLDNILENHAGSHY 221

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  DID+FK  NDN+GH +GD+ +A +S  +     +   V R GGEEF       +  
Sbjct: 222 VLLLDIDHFKAYNDNYGHAMGDQALARVSVAIRDAVRSRDVVTRYGGEEFLVLMTNVNSS 281

Query: 191 EAAILANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAK 248
            A  LA  +R+ + + +I      ++  H+TISAGIA   +       +  AD ALYVAK
Sbjct: 282 IAMKLAERIRQYVLDLEIPHLFNETVSTHVTISAGIA-PIYDNDFDQAVANADSALYVAK 340

Query: 249 KSGRNRVVCFSDI 261
             GRN ++ + D+
Sbjct: 341 NQGRNTILAWEDL 353


>gi|228947764|ref|ZP_04110051.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228811751|gb|EEM58085.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 431

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          NE ++++ FDID FK +
Sbjct: 255 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAV 314

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 315 NDTYGHDFGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 374

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q +  S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 375 IETKQFSGIS----KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCVY 426


>gi|209523455|ref|ZP_03272010.1| diguanylate cyclase [Arthrospira maxima CS-328]
 gi|209496197|gb|EDZ96497.1| diguanylate cyclase [Arthrospira maxima CS-328]
          Length = 396

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 108/244 (44%), Gaps = 15/244 (6%)

Query: 27  FMIYFSI-FFSIFIATVIFIANIFLFYIG---LTPFYGLEYILVENLSLVIISITISLLL 82
            M++  +  F + IA  + + N  L       ++ F+ +  +L   +  V        +L
Sbjct: 154 IMLWLDLMLFIVLIARTLILLNFCLSPSTDDTISNFHMMGLLLFLTIPCVNAQTLCFPVL 213

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFD 135
            ++     +EL ++  ++ +L+ +D L+GLLN     S L             LSI+  D
Sbjct: 214 DFMET--YRELLVANKKLEKLATVDELTGLLNRRFLNSRLEQEIAYHQQMGFPLSIMLID 271

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK+IND FGH  GD V+  ++              R GGEEF      S   +A  +
Sbjct: 272 IDHFKKINDQFGHLAGDYVLQKVAKLTNKFLRVNDLAFRYGGEEFMVLLPRSEISQALDM 331

Query: 196 ANDLRKIIENSQINISSGPS-IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           A  LR  I     N    PS   IT S GI+E       +  ++ +AD ALY AK  GRN
Sbjct: 332 AEGLRVSISQLYFNHPDIPSDFQITASFGISELTKDVRCLDDLLKQADLALYQAKSQGRN 391

Query: 254 RVVC 257
           +V  
Sbjct: 392 QVCM 395


>gi|149377630|ref|ZP_01895368.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter algicola DG893]
 gi|149358103|gb|EDM46587.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter algicola DG893]
          Length = 376

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 82/174 (47%), Gaps = 8/174 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDN 145
           L          ++ D L+GL N       L +  ++        S++  DID FK +NDN
Sbjct: 200 LLKLAAEFEYAAKHDALTGLANRREAHEQLETEYQRYLRNSRVFSVLLMDIDLFKSVNDN 259

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD+ I  ++  L         + R GGEE+      +   EA   AN +R+ I +
Sbjct: 260 HGHQVGDETIVMVARTLQEHSRKVDTLARWGGEEYLVLLPETDTFEAVQTANRIRQTIAS 319

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + I    G SI+ TIS G+A     E +  ++ RAD+ALY AK  GRN V  F 
Sbjct: 320 TPIETQGG-SINATISVGVATIQGAESVDRLLQRADEALYRAKTLGRNMVCDFE 372


>gi|157827084|ref|YP_001496148.1| response regulator PleD [Rickettsia bellii OSU 85-389]
 gi|157802388|gb|ABV79111.1| response regulator PleD [Rickettsia bellii OSU 85-389]
          Length = 457

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 59/191 (30%), Positives = 85/191 (44%), Gaps = 13/191 (6%)

Query: 79  SLLLGYISGSILKELFISYNR--ISQ---LSRIDCLSGLLNHSAFI-------SSLGSYN 126
           S L   I   + ++ +    R  + Q   L+  D L+GL N   F               
Sbjct: 265 SELAARIKTQLRRKQYQDNLRNDLEQSVNLAAKDGLTGLFNRRYFDVHIKQIVEKANKEG 324

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
            KL ++  DID FK +ND +GH  GDKV+   S  L   F     + R GGEEF      
Sbjct: 325 MKLYLLMCDIDNFKHVNDTYGHQAGDKVLITTSRILKNTFRVTDLIARFGGEEFTILLND 384

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALY 245
            +  +A   A  +R  IE+    I      +  T+S G+ E    E I   I R+D+A+Y
Sbjct: 385 INIDQAIYTAERVRVKIESMNFQIDEQEEPLKKTVSIGVTEYKKCESIEEFIERSDKAMY 444

Query: 246 VAKKSGRNRVV 256
            AK +G+N+VV
Sbjct: 445 EAKTTGKNKVV 455


>gi|95930341|ref|ZP_01313078.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95133593|gb|EAT15255.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 319

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 10/186 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           ++   L  S   +  LS  D L+ L N    + +L           E  S++  D+D+FK
Sbjct: 126 TLQDNLKRSNRLLLNLSSTDSLTQLYNRRVLMRTLRKEFQRQVRTEESFSLLMVDVDHFK 185

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD V+  L+  L           R GGEEFA     ++ + A  +A  LR
Sbjct: 186 NINDRYGHLNGDTVLINLARMLRSYLRPYDVPTRFGGEEFALVLPNTNMECAREVAERLR 245

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCF 258
              +  + +      + ITIS G+A       E    ++   D ALY AK +GR++VVC 
Sbjct: 246 LAAKELRFS-GEIRDLEITISIGVATCPADGVESEDDLLKLTDDALYAAKSAGRDQVVCA 304

Query: 259 SDIENN 264
           +++  N
Sbjct: 305 TELPTN 310


>gi|313607500|gb|EFR83825.1| ggdef domain-containing protein [Listeria monocytogenes FSL F2-208]
          Length = 260

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 109/233 (46%), Gaps = 11/233 (4%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           F I+   ++ I       I L      E +   N+++ ++   I+L++G +S  ++  + 
Sbjct: 29  FKIWGVFILNIIACSFVVINLHLILARESLFWINMTIFVL---IALVIGAVSAGLMSNMI 85

Query: 95  IS---YNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFG 147
            S   + +  Q S +D L+ L N   F       + S + +++++  DIDYFK IND +G
Sbjct: 86  KSKQLFQKYEQDSTLDYLTKLSNVRQFDEKINHVMDSGSRQVTLMLIDIDYFKNINDTYG 145

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD ++  L+  L           R GGEEF+   L  S +E   +A  +RK  E   
Sbjct: 146 HDAGDAILKQLAVILKASTTDGSEAFRNGGEEFSIVLLDCSIEEGNKVAEQVRKETEEHD 205

Query: 208 INISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFS 259
             I  G  + ITIS G++        S  +   AD+ALY AK +GRNRV    
Sbjct: 206 FVIPGGQKVKITISVGVSSNKAGANTSEGLFKSADEALYKAKLTGRNRVCIAD 258


>gi|299067929|emb|CBJ39143.1| putative integral membrane sensor protein; putative GGDEF, MHYT and
           EAL domains [Ralstonia solanacearum CMR15]
          Length = 701

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/280 (22%), Positives = 112/280 (40%), Gaps = 23/280 (8%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL-FYIGLTPFYGLEY 63
           L    ++W+      +S          ++   + I  + +       F +G         
Sbjct: 151 LASGAALWIAFRLRRQSRHVRAKRAGAAVVMGLAIVGMHYTGMAAAGFPLGSLCGAAGGG 210

Query: 64  ILVENLSLVIISITISLLLGYISGSIL------------KELFISYNRISQLSRIDCLSG 111
           +  E L+LVII +T+++L   +  S+L              L  +   ++ L+  D L+ 
Sbjct: 211 VSAEWLALVIIVVTLAVLAMALLISVLDLRMEARTAVLATSLAKANRELAYLALHDNLTK 270

Query: 112 LLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           L N       L    +         +++F D+D FK +ND +GH VGD ++A ++ ++V 
Sbjct: 271 LSNRLLLEDRLEQAIQAAGRTRGSFALMFLDLDGFKAVNDVYGHHVGDLLLADVAQRIVA 330

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                  V R+GG+EF   A      +A  LA+ L   +      +  G  + ++ S GI
Sbjct: 331 CVRQQDTVARVGGDEFVVLASVGEPADAGTLADALLAAVRA--PFLVDGYELRVSTSIGI 388

Query: 225 AERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           A           ++  AD A+Y AK  GR+    F    N
Sbjct: 389 ALYPDDGAGQHDLLTNADAAMYHAKGMGRDTYCFFEASMN 428


>gi|302879540|ref|YP_003848104.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
           capsiferriformans ES-2]
 gi|302582329|gb|ADL56340.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
           capsiferriformans ES-2]
          Length = 332

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 11/182 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           + + + E      R+  ++  D L+ L N +     L             ++++F D+D 
Sbjct: 148 THADITERKNMEERMRHMAHYDLLTELPNRALINERLQQAVIKARRDKTFMAVMFLDLDR 207

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILAN 197
           FK +ND  GH VGD ++  ++ +L+        V RLGG+EF         +Q+A ++A 
Sbjct: 208 FKPVNDELGHDVGDLLLKQVAQRLLSSVRASDTVARLGGDEFVVLLPAIEQQQDATVVAE 267

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +   ++    N+     IHI+ S GIA    H E    ++  AD A+Y AKK GRN + 
Sbjct: 268 KILHALKQ-PFNVLE-YDIHISASIGIAAYPEHGEDEKLLLINADIAMYHAKKDGRNDLR 325

Query: 257 CF 258
            +
Sbjct: 326 FY 327


>gi|144898358|emb|CAM75222.1| (GGDEF domain) [Magnetospirillum gryphiswaldense MSR-1]
          Length = 619

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 82/179 (45%), Gaps = 9/179 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           E       + + +  D ++GL N             ++     ++ I+  D+D+FK +ND
Sbjct: 436 ETKKLMETLRESALRDPMTGLNNRRFLEEYVDTLVANVQRRQSQVGIMMLDLDFFKMVND 495

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD VI  ++  L         V R GGEEF    L +S ++A  +A  +R  +E
Sbjct: 496 TYGHDAGDAVIKAMAKVLRQAVRASDMVIRYGGEEFLIVLLDASPEQADQIAEKIRSTVE 555

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              I  +    +  TIS G+A+     +     +  AD ALY AK +GRN+VV F+   
Sbjct: 556 ALDIQ-AGTTVLRKTISIGVADFPSDSDTFWQAVKFADVALYQAKDTGRNKVVRFNTDM 613


>gi|330812147|ref|YP_004356609.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327380255|gb|AEA71605.1| putative diguanylate cyclase/phosphodiesterase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 1239

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + +  L  +  R+   +  D L+GL N + F S L            + +++F D+D FK
Sbjct: 783 ADISSLKHAQARLDYQAHHDPLTGLPNRTLFESRLLAALNGQQENGGQGAVLFLDLDRFK 842

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            IND+ GHPVGD ++  ++ +L         V RLGG+EF     G  +  +A  +A  L
Sbjct: 843 HINDSLGHPVGDLLLKGIAVRLREQLRDIDTVARLGGDEFIILLPGLQQPSDAEHIAQKL 902

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
                      +      I+ S G +        ++T++  AD A+Y +K  GRNRV  +
Sbjct: 903 LNCF--GAPFQAGEHEFFISASIGTSLYPQDGCDVATLVKNADAAMYRSKAKGRNRVESY 960

Query: 259 S 259
           +
Sbjct: 961 T 961


>gi|294142625|ref|YP_003558603.1| GGDEF domain-containing protein [Shewanella violacea DSS12]
 gi|293329094|dbj|BAJ03825.1| GGDEF domain protein [Shewanella violacea DSS12]
          Length = 876

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 90/199 (45%), Gaps = 16/199 (8%)

Query: 76  ITISLLLGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSAFISSL-------GSY 125
           +  +  L  ++  + KE+        ++   +  D L+GL N + F+  L         +
Sbjct: 419 VVRTRALAMLNQDLEKEVTQRRKVEEQLVHDANHDSLTGLPNRAMFMERLTQAVKHIRRH 478

Query: 126 N-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
             ++  ++F D+D FK IND  GH  GD+ +   S +L +       +GR+GG+EF    
Sbjct: 479 GLDRFGLLFIDLDRFKLINDTLGHQQGDRFLVETSRRLRLCIRDNDTLGRIGGDEFVILL 538

Query: 185 LGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRAD 241
               S  +A  +A  +  + E S+    +  S   + S G+A  C+   +   +++  AD
Sbjct: 539 DSINSTSDAKEVAERI--LTELSRPYELANQSFTSSASIGVAFSCNHKSDTAESLLRDAD 596

Query: 242 QALYVAKKSGRNRVVCFSD 260
            A+Y AK  G+   V F +
Sbjct: 597 AAMYQAKSKGKGCYVIFDE 615


>gi|281179017|dbj|BAI55347.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 569

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 99/202 (49%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LLL  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 367 LTLLWALFTSMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAK 426

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH VGD+V++  +  +          GR+GGEEF
Sbjct: 427 LCQTHQHPFSVIQVDLDHFKAINDRFGHQVGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 486

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G++  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 487 CVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 546

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 547 LADRRLYLAKQAGRNRV-FASD 567


>gi|172036326|ref|YP_001802827.1| hypothetical protein cce_1411 [Cyanothece sp. ATCC 51142]
 gi|171697780|gb|ACB50761.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 485

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 82/178 (46%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQIN 143
           +EL  +  ++  L+ ID L+ + N   F   L     +L+       ++  D+DYFK  N
Sbjct: 300 QELEKATEKLKHLATIDELTQVYNRRYFNEYLRREWRRLARERKFISLIVCDVDYFKLYN 359

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D + H  GDK +  ++  L   V      V R GGEEF      ++   A  +A +L   
Sbjct: 360 DYYYHQAGDKCLYKVAQCLKNLVKRPADLVARFGGEEFVIILSNTNRLGAEKVAQELCNA 419

Query: 203 IENSQINIS-SGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IE  +I    S  S ++T+S G+A      +     +I  AD+ALY AK  GRNR   
Sbjct: 420 IEALEIPHYCSKCSSYVTLSLGVATTIPTPQVSPQKLIKAADKALYQAKDMGRNRFSV 477


>gi|90426221|ref|YP_534591.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
 gi|90108235|gb|ABD90272.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
          Length = 778

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 12/187 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---------YNEKLSIVFFDIDYF 139
            + E   +  RI  L+R D L+GL N   F   +                +++F D+D F
Sbjct: 323 DITERRSAEARIIHLARYDELTGLPNRVNFRDEIERLLMAVHGHAETRPSALLFIDLDQF 382

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           KQ+ND  GHP GD+++  ++D+L  +     FV R GG+EF        S++++A+LA  
Sbjct: 383 KQVNDTLGHPCGDQLLCDVADRLREMLRPEDFVARFGGDEFVVFQQHIASKEDSALLARR 442

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   +  S+  +     + I  S GIA          ++  AD ALY AK  GR     F
Sbjct: 443 IVDRL--SERYLIDHHVVEIGASIGIAVTAPGVKADVLLKNADMALYRAKADGRGTFCFF 500

Query: 259 SDIENNT 265
            +   +T
Sbjct: 501 REEMAHT 507


>gi|330874407|gb|EGH08556.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 490

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 12/186 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIV 132
           L L ++    L+    + + ++ L+  D L+GL N                   ++LS++
Sbjct: 293 LWLTWLLCRELRRRHRAEDALASLAATDGLTGLDNRRQLDEAMETEWARAQRSGKQLSLL 352

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQE 191
             D+D+FK  N+  GH  GD+ +  ++  +   +      V R GGEEF      +    
Sbjct: 353 MIDVDHFKAFNERHGHQGGDEALRLIAQTISFNIRRPGDRVARYGGEEFVVVLPETELPG 412

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKK 249
           A ++A  +RK  E+  +    G    IT+S G+        + +      AD+ALY AK 
Sbjct: 413 AMMIAEQIRKAAESLPLFP--GAQQPITVSIGVVSEMVRQGDKLEAFFGIADKALYQAKH 470

Query: 250 SGRNRV 255
            GRNRV
Sbjct: 471 KGRNRV 476


>gi|315297171|gb|EFU56451.1| diguanylate cyclase domain protein [Escherichia coli MS 16-3]
          Length = 430

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 258 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-LAQDYSLLLIDTDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|126658376|ref|ZP_01729525.1| hypothetical protein CY0110_27490 [Cyanothece sp. CCY0110]
 gi|126620308|gb|EAZ91028.1| hypothetical protein CY0110_27490 [Cyanothece sp. CCY0110]
          Length = 1242

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 12/189 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYF 139
           S + E   +  ++   +  D L+ L N   F+  L     +         +++F D+D F
Sbjct: 792 SDITEKKRAEEQLQYNATHDPLTNLPNRILFMDRLEHAIARQKRHLNFTFAVLFLDLDEF 851

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND+ GH +GD+++  ++ +L     +   + RLGG+EFA         ++A  +A  
Sbjct: 852 KVINDSLGHAIGDQLLQEIARRLEDGLCSDDTLARLGGDEFAILLEDIEDIKKAIKIAQQ 911

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           +   ++  +  +  G  I I  S GIA      E  S I+  AD A+Y AK  G+     
Sbjct: 912 IH--LDLIKPFVLQGQDIFINTSIGIALNSPAYEAASEILRDADTAMYRAKADGKACYAI 969

Query: 258 FSDIENNTC 266
           F    +   
Sbjct: 970 FDRQMHERA 978


>gi|21233187|ref|NP_639104.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66770127|ref|YP_244889.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188993335|ref|YP_001905345.1| diguanylate cyclase domain protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21115037|gb|AAM43016.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575459|gb|AAY50869.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167735095|emb|CAP53307.1| diguanylate cyclase domain protein [Xanthomonas campestris pv.
           campestris]
          Length = 483

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 15/182 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           ++L  +  ++   +R D L+GL N   F  +               S++  D+DYFKQ N
Sbjct: 299 RQLEQANAQLLGAARNDHLTGLANRRGFDRAFERLLPAVRDGTRGASVLMLDVDYFKQYN 358

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GHP GD+ +  ++  L   V      V R GGEEFA     +    AA +A  L++ 
Sbjct: 359 DRYGHPQGDQCLRDIAAALRSVVTRGEDVVARYGGEEFALLLPDTDLPGAAEVARRLQER 418

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPI-------STIIYRADQALYVAKKSGRNRV 255
           +    I+ +  P   IT+S G+     +E           ++ RAD+ALY AK  GRNRV
Sbjct: 419 LAAMPISHAGSPCARITVSIGVTALQPQECQVQDARVREAVMARADRALYQAKNQGRNRV 478

Query: 256 VC 257
             
Sbjct: 479 AL 480


>gi|320322854|gb|EFW78945.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320329837|gb|EFW85825.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 509

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 12/186 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIV 132
           L L ++    L+    + + ++ L+  D L+GL N                   ++LS++
Sbjct: 312 LWLTWLLCRELRRRHRAEDALASLAATDGLTGLDNRRQLDEAMETEWARAQRSGKQLSLL 371

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQE 191
             D+D+FK  N+  GH  GD+ +  ++  +   +      V R GGEEF      +    
Sbjct: 372 MIDVDHFKAFNERHGHQGGDEALRLIAQTISFNIRRPGDRVARYGGEEFVVVLPETELPG 431

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKK 249
           A ++A  +RK  E+  +    G    IT+S G+        + +      AD+ALY AK 
Sbjct: 432 AMMIAEQIRKAAESLPLFP--GAQQPITVSIGVVSEMVRQGDKLEAFFGIADKALYQAKH 489

Query: 250 SGRNRV 255
            GRNRV
Sbjct: 490 KGRNRV 495


>gi|253996596|ref|YP_003048660.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
 gi|253983275|gb|ACT48133.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
          Length = 623

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 12/189 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
              +     + ++I  L+  D L+ L N    I  L         +    +++F D+D+F
Sbjct: 168 QQDIARRKEAEDKIQHLAYYDLLTNLPNRLLLIDRLQHTLAMSARHQNHGALLFIDLDHF 227

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ--EAAILAN 197
           K +ND  GH VGD ++  ++ +L         + RLGG+EF       SE   +AA+ A 
Sbjct: 228 KTLNDTKGHSVGDLLLVEVAKRLQTCMREGDTLARLGGDEFVVILQDLSEDSSQAAVQAE 287

Query: 198 DLRKII--ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
            +   I    +          H + S G+    ++E  +  ++ RAD A+Y AK +GRN 
Sbjct: 288 TVCAKIISAINLPYYLDSYLYHSSTSVGVCLFRNQEFTVDELLKRADIAMYQAKSAGRNT 347

Query: 255 VVCFSDIEN 263
              +     
Sbjct: 348 QRFYDPTMQ 356


>gi|237808108|ref|YP_002892548.1| diguanylate cyclase with PAS/PAC sensor [Tolumonas auensis DSM
           9187]
 gi|237500369|gb|ACQ92962.1| diguanylate cyclase with PAS/PAC sensor [Tolumonas auensis DSM
           9187]
          Length = 423

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 8/177 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
            E      R+  L+  D L+ L N    +                L+I   D+D+FK +N
Sbjct: 248 TEQKTHEERLRTLAERDHLTRLFNRRKIMDCLETEISRADRQASALTIAMLDLDHFKNVN 307

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD V+   +           ++GR+GGEEF      + + EA  +   +  ++
Sbjct: 308 DKWGHAAGDLVLKEFALLCQQQIRKLDYLGRIGGEEFLLIMSDTDQTEAMFVLERIISVV 367

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++   N      I+IT SAG+AE    + I  +  +AD+ALY AK  GRN++V  ++
Sbjct: 368 QHHCFNWKQ-TEINITCSAGLAEWHPLQNIQQLYTQADKALYEAKNHGRNQIVIATE 423


>gi|254506497|ref|ZP_05118639.1| diguanylate cyclase [Vibrio parahaemolyticus 16]
 gi|219550671|gb|EED27654.1| diguanylate cyclase [Vibrio parahaemolyticus 16]
          Length = 325

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 9/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
             + +       + +LS  D L+ +LN  AF+  L           E +S +  DID+FK
Sbjct: 126 RDITDAHQREQTLKRLSETDELTKVLNRRAFMLELDQAFMAARQAKEHVSCLMIDIDHFK 185

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND  GH  GD+VIA ++        +   +GRLGGEEF          +A  +A  +R
Sbjct: 186 EINDQVGHLSGDEVIAHVARICQQQIRSSDAIGRLGGEEFGIMLSKIGAIQAYDIAERIR 245

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           + IE +   +  G  I  T+S GIAE       + T++ +AD+A+Y +K +GRN+V  +
Sbjct: 246 ESIETTPCEV-DGKLIFPTVSIGIAEADDTLSDVKTLLVQADKAMYYSKHTGRNQVTIY 303


>gi|152992968|ref|YP_001358689.1| hypothetical protein SUN_1379 [Sulfurovum sp. NBC37-1]
 gi|151424829|dbj|BAF72332.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 703

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 85/197 (43%), Gaps = 13/197 (6%)

Query: 81  LLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSI 131
           L+  I+     E  +   +  +   +  D L+ L N   F   L     K        ++
Sbjct: 246 LIHDITEQKKAEAVLQEQKNILRYQAHHDALTRLPNRVLFFDRLEQSIRKTARSEKDFAL 305

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQ 190
            F D+D FK IND+ GH +GD+V+   + ++         + RL G+EF          +
Sbjct: 306 FFIDLDKFKHINDSLGHSIGDRVLRVTAKRIKETIRQEDTLARLSGDEFTVIMEDLGHPE 365

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKK 249
           +A++LA  +  +++  +       +++I+ S GI+          +++  AD A+Y AK+
Sbjct: 366 DASVLAEKILLVLQ--KPMYIDEYTLYISGSIGISLYPQDAMDTESLLKYADTAMYKAKE 423

Query: 250 SGRNRVVCFSDIENNTC 266
           +GRN    ++       
Sbjct: 424 NGRNTFEFYAPEMTEYA 440


>gi|66047902|ref|YP_237743.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63258609|gb|AAY39705.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 432

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 118/285 (41%), Gaps = 36/285 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL------FYIG 54
           + +S    L +WL   +         +M    + +++F+ +   +   +L          
Sbjct: 141 LEQSYPVELQVWLADIR--WPVLHGAWMSLIQLSYAMFLVSFGVLIWQYLEKPRPLHAAQ 198

Query: 55  LTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           +    GL + L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL 
Sbjct: 199 IVGLLGLLWALPKTFILPFTLNILCSQVMLMIAAAVAHEAY-------QMAFRDELTGLP 251

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A    +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        
Sbjct: 252 GRRALNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAY 311

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------------------- 214
           R GGEEFA      S  E       +R+ I + +I + +                     
Sbjct: 312 RYGGEEFAIVFAAKSIDECMPHLEAIRETIASYEIQLRNKDNRPQDDQQGRQRRSGAQAG 371

Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S+ +T+S G+AER         ++  ADQALY AK +GRN VV +
Sbjct: 372 SVSVTVSIGVAERQPEHRTPEEVLKSADQALYAAKGAGRNCVVAY 416


>gi|56696066|ref|YP_166420.1| diguanylate cyclase, putative [Ruegeria pomeroyi DSS-3]
 gi|56677803|gb|AAV94469.1| diguanylate cyclase, putative [Ruegeria pomeroyi DSS-3]
          Length = 598

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 8/169 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
            +++   S  D L+GL N      +L            +LS++  D+D+FK+ ND  GH 
Sbjct: 398 RDQLHDQSVRDPLTGLFNRRHLTETLRKQLLHCQTRGGRLSLIAVDVDHFKKFNDTHGHD 457

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  +   L           R+GGEEF    L  + ++A   A  LR+ +E   + 
Sbjct: 458 AGDMVLRAVGAALEQACDRDEVACRIGGEEFMLVLLDCAPEDALTRAELLRQSVEEVSVR 517

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
                   +TISAG+A    H      ++  AD ALY AK  GRN+V  
Sbjct: 518 YGEKTLPRVTISAGVAHYPRHGTMPQDLMRAADDALYEAKGLGRNQVRV 566


>gi|299530043|ref|ZP_07043470.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           S44]
 gi|298722023|gb|EFI62953.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           S44]
          Length = 435

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 83/184 (45%), Gaps = 12/184 (6%)

Query: 81  LLGYISGS-ILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIV 132
           +  Y+S S  + +L      +   +  D L+GL N SA                   +++
Sbjct: 225 ITHYVSISKDISDLVQREQELLVRAYRDDLTGLPNRSAGSYELENCQRIAERQGVPYALI 284

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D FKQ+ND FGH  GD+V+  ++  L     +   V R GGEEF     G   Q A
Sbjct: 285 MCDVDLFKQVNDQFGHEAGDQVLQQIAKVLRSTVRSSEHVARWGGEEFLIIVPGVGLQAA 344

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             LA  LR+ I +     +      IT+S G+      E  + ++ R D ALY AK SGR
Sbjct: 345 LELAERLRRSIASHSYAAAG----TITMSFGVGSWQAGEASAQLLRRTDMALYRAKSSGR 400

Query: 253 NRVV 256
           N+V 
Sbjct: 401 NQVR 404


>gi|225631178|ref|ZP_03787881.1| response regulator PleD [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591126|gb|EEH12305.1| response regulator PleD [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 460

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 15/191 (7%)

Query: 81  LLGYISGSILKELFISYNRI-----SQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           L+  ++  + ++ +    R+     +++S  D L+   N   F + L          + +
Sbjct: 266 LIARVNSQVKRKRYQDALRMNLFNNAEMSIKDPLTNCYNRRYFDAHLRNIVKDSVEKDRR 325

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS++  DIDYFK +ND+FGH  GD+++  +  ++         + R GGEEF      ++
Sbjct: 326 LSLMILDIDYFKIVNDSFGHSAGDELLKQIQKRISENIRVTDLLARFGGEEFVVVMPDTN 385

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHK--EPISTIIYRADQALY 245
             +A  +A  +RKII      ++   + H +T+S GIAE      + I   I RAD+ LY
Sbjct: 386 VSDAYTIAERIRKIIAKEPFVLADKNTTHNVTVSIGIAEMQGSDFDDIKKFIVRADRYLY 445

Query: 246 VAKKSGRNRVV 256
            AK SGRNRVV
Sbjct: 446 KAKNSGRNRVV 456


>gi|192359980|ref|YP_001983291.1| sensory box protein [Cellvibrio japonicus Ueda107]
 gi|190686145|gb|ACE83823.1| sensory box protein [Cellvibrio japonicus Ueda107]
          Length = 1306

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 93/207 (44%), Gaps = 18/207 (8%)

Query: 74   ISITISLLLGYISGSILKELFIS--YNRISQLSRIDCLSGLLNHSAFISSL-------GS 124
            +S  +  LL   +  I  EL  +    +I +L+  D L+ L N    +  L         
Sbjct: 833  VSPQVRSLLLIFAERISGELNRASDQEQIYRLAFFDPLTRLPNRRMLMDRLRLIIAQSAR 892

Query: 125  YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
             +++ +++F D+D+FK +ND  GH +GD+++  +++++  +  T     RLGG+EF    
Sbjct: 893  TSQQGALLFIDLDHFKLLNDTRGHHIGDQLLVQVAERISSIIRTTDLAARLGGDEFVVVF 952

Query: 185  ------LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTII 237
                     +  EA   A  L ++I N    +      H TIS G+     +   I  ++
Sbjct: 953  DNLGTDPDKAALEAKHRAEQLHELI-NLPYPLQQSV-YHCTISIGVNLFNANNTSIDDLL 1010

Query: 238  YRADQALYVAKKSGRNRVVCFSDIENN 264
              AD A+Y AK  GRN +  F     +
Sbjct: 1011 RHADVAMYQAKDGGRNTIRFFDPHMQS 1037


>gi|156972882|ref|YP_001443789.1| signal transduction protein [Vibrio harveyi ATCC BAA-1116]
 gi|156524476|gb|ABU69562.1| hypothetical protein VIBHAR_00559 [Vibrio harveyi ATCC BAA-1116]
          Length = 815

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 11/189 (5%)

Query: 81  LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           L+ YI     +        ++ +++  D L+ L N +  IS L  +           + +
Sbjct: 370 LINYICVFEDISVRKAHEEKLQRMAFYDPLTNLPNRTHLISLLEQHIESGQQHQHAFATL 429

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQE 191
           F DID+FK IND+ GH  GD+++  L+D+L  V      V R+GG+EF        S+ +
Sbjct: 430 FLDIDHFKHINDSMGHFCGDQLLTKLADRLQDVLHLRAHVARIGGDEFVIILPNIESDSQ 489

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
                 D+  +  N    +S    + I+ S G+A      +   T++  AD A+Y+AKK+
Sbjct: 490 LIDTIEDILCLF-NRPFEVSKNEPLRISTSVGVARYPQDGQESETLLKNADTAMYLAKKN 548

Query: 251 GRNRVVCFS 259
           GRN    +S
Sbjct: 549 GRNGYAFYS 557


>gi|15800111|ref|NP_286123.1| diguanylate cyclase AdrA [Escherichia coli O157:H7 EDL933]
 gi|15829689|ref|NP_308462.1| diguanylate cyclase AdrA [Escherichia coli O157:H7 str. Sakai]
 gi|168749835|ref|ZP_02774857.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756914|ref|ZP_02781921.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4401]
 gi|168768323|ref|ZP_02793330.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776322|ref|ZP_02801329.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783238|ref|ZP_02808245.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786219|ref|ZP_02811226.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC869]
 gi|195938555|ref|ZP_03083937.1| diguanylate cyclase AdrA [Escherichia coli O157:H7 str. EC4024]
 gi|208807537|ref|ZP_03249874.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815128|ref|ZP_03256307.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208823086|ref|ZP_03263404.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396741|ref|YP_002269023.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4115]
 gi|217325787|ref|ZP_03441871.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           TW14588]
 gi|254791563|ref|YP_003076400.1| diguanylate cyclase AdrA [Escherichia coli O157:H7 str. TW14359]
 gi|261223861|ref|ZP_05938142.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256069|ref|ZP_05948602.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291281288|ref|YP_003498106.1| MASE2 domain/diguanylate cyclase [Escherichia coli O55:H7 str.
           CB9615]
 gi|12513225|gb|AAG54731.1|AE005217_9 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13359892|dbj|BAB33858.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187768330|gb|EDU32174.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015870|gb|EDU53992.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999344|gb|EDU68330.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355958|gb|EDU74377.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362362|gb|EDU80781.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4486]
 gi|189373607|gb|EDU92023.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC869]
 gi|208727338|gb|EDZ76939.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731776|gb|EDZ80464.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737279|gb|EDZ84963.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158141|gb|ACI35574.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4115]
 gi|209744364|gb|ACI70489.1| hypothetical protein ECs0435 [Escherichia coli]
 gi|209744366|gb|ACI70490.1| hypothetical protein ECs0435 [Escherichia coli]
 gi|209744368|gb|ACI70491.1| hypothetical protein ECs0435 [Escherichia coli]
 gi|209744370|gb|ACI70492.1| hypothetical protein ECs0435 [Escherichia coli]
 gi|209744372|gb|ACI70493.1| hypothetical protein ECs0435 [Escherichia coli]
 gi|217322008|gb|EEC30432.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           TW14588]
 gi|254590963|gb|ACT70324.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str.
           TW14359]
 gi|290761161|gb|ADD55122.1| MASE2 domain/diguanylate cyclase [Escherichia coli O55:H7 str.
           CB9615]
 gi|320192794|gb|EFW67434.1| Protein YaiC [Escherichia coli O157:H7 str. EC1212]
 gi|320638373|gb|EFX08087.1| diguanylate cyclase AdrA [Escherichia coli O157:H7 str. G5101]
 gi|320643753|gb|EFX12876.1| diguanylate cyclase AdrA [Escherichia coli O157:H- str. 493-89]
 gi|320649104|gb|EFX17682.1| diguanylate cyclase AdrA [Escherichia coli O157:H- str. H 2687]
 gi|320655997|gb|EFX23913.1| diguanylate cyclase AdrA [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320662554|gb|EFX29943.1| diguanylate cyclase AdrA [Escherichia coli O55:H7 str. USDA 5905]
 gi|320665124|gb|EFX32217.1| diguanylate cyclase AdrA [Escherichia coli O157:H7 str. LSU-61]
 gi|326341141|gb|EGD64933.1| Protein YaiC [Escherichia coli O157:H7 str. 1044]
          Length = 371

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P +++ IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NTPQVNLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|307634951|gb|ADI84765.2| response receiver sensor diguanylate cyclase/phosphodiesterase, PAS
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 708

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 23/196 (11%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQ 141
            + E  ++  RI  L+  D L+ L N   F   +             ++++F D+D+FK+
Sbjct: 254 DITERTLAEERIRYLAHHDTLTALPNRFQFEERMEQALAFAQRNGFMMAVLFLDLDHFKK 313

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPM------------FVGRLGGEEFAAAALG-SS 188
           +ND  GH  GD+++   + +L+                   F+ R+GG+EF       + 
Sbjct: 314 VNDTLGHHAGDRLLQEAAGRLMKCLRRSDTLTHASREDASPFISRMGGDEFTILLTDLAH 373

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVA 247
            Q+AA ++  +   +  S+  +  G  + +  S GI+      E    ++  AD A+Y A
Sbjct: 374 PQDAARVSQRIITAL--SKRYVIGGHEVFVGASIGISLFPSDGEDCDQLLRNADTAMYHA 431

Query: 248 KKSGRNRVVCFSDIEN 263
           K+ GRN    +S   N
Sbjct: 432 KELGRNTYQYYSGSMN 447


>gi|254498079|ref|ZP_05110837.1| hypothetical protein LDG_2447 [Legionella drancourtii LLAP12]
 gi|254352689|gb|EET11466.1| hypothetical protein LDG_2447 [Legionella drancourtii LLAP12]
          Length = 509

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 55/181 (30%), Positives = 85/181 (46%), Gaps = 10/181 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139
           G  + E     + + ++S +D L+G+ N   F             Y + L+I+  DID+F
Sbjct: 324 GEDITEKMKLQSLLQEMSYMDGLTGIANRRRFDDFLTHEWYRAARYAKPLAIIMMDIDFF 383

Query: 140 KQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           K+ ND+ GH  GD  +  +   L   V      + R GGEEF      ++  +A + A  
Sbjct: 384 KRYNDSLGHLAGDDALKRVVHALKSRVLRRTDLLARYGGEEFICILPDTNVIDATLFAET 443

Query: 199 LRKIIENSQINISSG-PSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
           LR+ +   Q+       S  +TIS G+A    +E   S ++  AD+ALY AK  GRNRV 
Sbjct: 444 LRQAVCALQLPHPDSNISSFVTISVGVACCTPREGEPSNLLGLADEALYRAKTLGRNRVE 503

Query: 257 C 257
            
Sbjct: 504 V 504


>gi|239993546|ref|ZP_04714070.1| GGDEF domain protein [Alteromonas macleodii ATCC 27126]
          Length = 371

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 72/254 (28%), Positives = 109/254 (42%), Gaps = 14/254 (5%)

Query: 15  HEKNLESFSPHTFMIYFSIFFSIFIATVIF--IANIFLFYIGLTPFYGLEYILVENLSLV 72
           +   L  +      ++F+ F    IA + +  ++ I LF      F    Y       L+
Sbjct: 107 NTGPLWIYLVPPVTMFFAGFVRGLIALIAYTLVSAIVLFGFNDASFVA-NYTYAFKTRLL 165

Query: 73  IISITISLLLGYISGSILKELFISY---NRISQLSRIDCLSGLLNHSAFISSLGSY---- 125
              +T+S L  +   S  K    +     +  + ++ D L+ LLN       L       
Sbjct: 166 YSFLTVSFLSAFYEYSRQKSYDTALYLSEQFERQAKHDHLTQLLNRRGAQQCLEREYARM 225

Query: 126 ---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                K S+   DID FK IND  GH  GD+V+  +S            + R GGEEF  
Sbjct: 226 LRSKRKFSVAIADIDRFKSINDTLGHEQGDEVLRQISKVFSSRLRGQDILARWGGEEFMF 285

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
               + E  A     ++R I+ N+ +NI +G  IH+T S G++E      IS  + RADQ
Sbjct: 286 IFTDTDEAGAVNALENIRDILNNAPLNI-NGSEIHVTSSFGVSEVNPDIDISCAVRRADQ 344

Query: 243 ALYVAKKSGRNRVV 256
           ALY AK +GR+ V 
Sbjct: 345 ALYYAKDNGRDCVC 358


>gi|166364040|ref|YP_001656313.1| two-component response regulator [Microcystis aeruginosa NIES-843]
 gi|166086413|dbj|BAG01121.1| two-component response regulator [Microcystis aeruginosa NIES-843]
          Length = 310

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 68/263 (25%), Positives = 114/263 (43%), Gaps = 24/263 (9%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60
           +   + D   I LC     ++   H  +I+  +  S     +I   N         PF+ 
Sbjct: 58  LDLMMPDMGGIELCRRLKTDTLYAHIPIIF--VTDSKEKEDIINAFNSGAVDYVNKPFHS 115

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI- 119
            E         ++  + I L L        +EL    +++ +L R D L+G+ N    + 
Sbjct: 116 WE---------LLARVKIHLEL----KKTQEELKNINSQLEKLVRTDSLTGVNNRREILY 162

Query: 120 ------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                      Y+   S++F DID+FK IND FGH +G+K +  ++  +          G
Sbjct: 163 LGEKEFQRCRRYHRYFSVLFIDIDHFKHINDTFGHTLGNKTLITVAGAIKTCLRQVDSFG 222

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEP 232
           R GGEEF A    ++ ++AA  A  + ++I    I ++    + +T S G+A        
Sbjct: 223 RFGGEEFVAILPETNLEDAATTAQRICQVINKLNIELAQ-QKVRVTASIGVATFSPQDNN 281

Query: 233 ISTIIYRADQALYVAKKSGRNRV 255
           +  +I RAD A++ AK  GRNRV
Sbjct: 282 LEEVIERADHAMFAAKNQGRNRV 304


>gi|153002545|ref|YP_001368226.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|151367163|gb|ABS10163.1| diguanylate cyclase [Shewanella baltica OS185]
          Length = 385

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 77/235 (32%), Positives = 115/235 (48%), Gaps = 17/235 (7%)

Query: 27  FMIYFSIFFSI-FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI 85
           +++Y +  F I FI   +F       +I L      +  LV    + II  T+ +LL   
Sbjct: 155 WLMYSTGLFGIGFIVRALFCYVKPELFIHLVAKSSFQSGLVIAGMIYIIFSTVVILLV-- 212

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQ 141
                  L      +S L+  D L+GL N  AF+ +    + S N  +S++  D+D FK+
Sbjct: 213 ------RLDRLNKELSTLASQDSLTGLFNRRAFMHNATSIIASENFPVSVLMLDLDNFKK 266

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH VGD V+   +D L         +GR GGEEFAA    +  ++A  ++  LR 
Sbjct: 267 INDVHGHNVGDTVLKLCADALQDGLKQYGIIGRFGGEEFAAILPRADSEQALAVSEKLRL 326

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            IE   +N    P I ++IS G+A       I  ++ RAD+ALY AK  GRN+V+
Sbjct: 327 AIETINVN----PDIRLSISIGVATSSSVSSIEPLLIRADKALYEAKSKGRNQVI 377


>gi|301385835|ref|ZP_07234253.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. tomato Max13]
 gi|302061854|ref|ZP_07253395.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. tomato K40]
 gi|302135185|ref|ZP_07261175.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 786

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 88/175 (50%), Gaps = 10/175 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +L      +  LS  D L+G  N   F   +         +   LSI+  DID+FK
Sbjct: 610 SDITDLKRVEEELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSIIMLDIDHFK 669

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +A  LA  LR
Sbjct: 670 RINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVVCPGTRGGQAYQLALSLR 729

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + + N  I    G    +T S GIA     E I T++ RAD  +Y AK++GR+RV
Sbjct: 730 EGLRNQVI---EGVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQAGRDRV 781


>gi|254524937|ref|ZP_05136992.1| hypothetical protein SSKA14_4077 [Stenotrophomonas sp. SKA14]
 gi|219722528|gb|EED41053.1| hypothetical protein SSKA14_4077 [Stenotrophomonas sp. SKA14]
          Length = 710

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 89/182 (48%), Gaps = 10/182 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE---KLSIVFFDIDYFKQINDN 145
           L  +   ++Q +  D L+ L N        + +L    +   + +++F D+D FKQ+ND 
Sbjct: 258 LTDAQQELTQAALHDPLTRLPNRLLLQRRIVQALAEAEQGGNRFAVMFMDLDGFKQVNDA 317

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD ++  ++++   +      + RLGG+EF        +++   LA  + + + +
Sbjct: 318 YGHQAGDALLVAVAERTRQLLRPHDMLARLGGDEFVLVVRIEHDEDLPTLARRILQAVGS 377

Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             +   +   + +T S G+A    H      ++  AD A+Y AK+SGRN  V F+D  N+
Sbjct: 378 GPLLPDN--ELQVTASIGVAICPDHAASERQLMAFADAAMYQAKESGRNAFVLFADWMND 435

Query: 265 TC 266
           + 
Sbjct: 436 SA 437


>gi|186681989|ref|YP_001865185.1| diguanylate cyclase with PAS/PAC and GAF sensors [Nostoc
           punctiforme PCC 73102]
 gi|186464441|gb|ACC80242.1| diguanylate cyclase with PAS/PAC and GAF sensors [Nostoc
           punctiforme PCC 73102]
          Length = 888

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 20/211 (9%)

Query: 58  FYGLEYILVENL-SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           +   E  L++ L S V I+I  S+L         +++  +   + +L+ +D L+ + N  
Sbjct: 678 WQAFEVNLLQQLASQVAIAIHQSVL--------YQQVQAANEELQRLATLDGLTQIANRR 729

Query: 117 AFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GT 168
            F          L      LS++ FD+D+FK+ ND +GH  GD  +  L   L  V    
Sbjct: 730 RFDQYLENEWHRLKREQMPLSLILFDVDFFKRYNDTYGHLAGDDCLRQLGSALKSVIKRP 789

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAER 227
              V R GGEEFA     +  + A  +A  +R+ + +  I  +       +T+S G+A  
Sbjct: 790 ADLVARYGGEEFAVILPNTEIEGAISVAQTIRQAVYDLIIPHAQSSVCDRVTVSLGVASI 849

Query: 228 CHK--EPISTIIYRADQALYVAKKSGRNRVV 256
                     +I  AD++LY+AK+ GR+RV 
Sbjct: 850 VPNCETSPQDLINAADKSLYIAKQQGRDRVH 880


>gi|330875169|gb|EGH09318.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 922

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 50/194 (25%), Positives = 86/194 (44%), Gaps = 11/194 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------ 130
           T ++LL        +EL  +  R+   +  D L+GL N S     L    +         
Sbjct: 469 TANVLLEARVRDRTRELDQANARLQHENSHDSLTGLPNRSQLQHRLRQAWQDFCRNGRQL 528

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            ++F D+D FK IND+ GH  GD ++   +++L         + RLGG+EFA  ++ +  
Sbjct: 529 VVMFIDLDRFKMINDSLGHHCGDILLIQAAERLRSCMREEDLLARLGGDEFAVLSIDTPL 588

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
           Q  A +A  +    E  Q  +    +I  + S G+  A+    +  + ++  AD A+Y  
Sbjct: 589 QTGAGIAQRILTAFE--QPFVIDDHTIFSSCSIGVVGADSQFHQEPADLLRDADTAMYRV 646

Query: 248 KKSGRNRVVCFSDI 261
           K  GR+    F+  
Sbjct: 647 KNGGRDSFAVFNQA 660


>gi|229162983|ref|ZP_04290939.1| Sensory box/GGDEF family protein [Bacillus cereus R309803]
 gi|228620389|gb|EEK77259.1| Sensory box/GGDEF family protein [Bacillus cereus R309803]
          Length = 431

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          +EK++++ FDID FK++
Sbjct: 255 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEAEWDNVIRNDEKIALILFDIDNFKKV 314

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 315 NDTYGHDFGDLALVQLAELMKSKVEQQHVFARWGGEEFIILVTDTVEKEAFQVAESLRFF 374

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q +  S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 375 IETKQFSGIS----KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCVY 426


>gi|254507683|ref|ZP_05119815.1| hypothetical protein VPMS16_3490 [Vibrio parahaemolyticus 16]
 gi|219549380|gb|EED26373.1| hypothetical protein VPMS16_3490 [Vibrio parahaemolyticus 16]
          Length = 650

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 49/176 (27%), Positives = 86/176 (48%), Gaps = 11/176 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
               R+  L+  D L+GL N          SL    E    L++++ D+D FKQ+ND +G
Sbjct: 478 KEMERLEYLAHHDSLTGLANRAHLYRVLDDSLKDEREAKNGLALLYLDLDGFKQVNDTYG 537

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+V+  ++++L+    +   V RL G+EF      +      +LA  L  +I+   
Sbjct: 538 HDAGDEVLKQVAERLLSQVRSQDLVARLSGDEFVVLLTSTDRSSITVLAQRLISLIKQDI 597

Query: 208 INISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             +  G  +++ +S G+     ++ P+  +I  AD A+Y AK  G+ + V  S+ E
Sbjct: 598 --VYRGRVLNVGVSIGVHYIEQRDIPMDQLIRAADTAMYQAKSLGKGQFVL-SETE 650


>gi|171057390|ref|YP_001789739.1| diguanylate cyclase [Leptothrix cholodnii SP-6]
 gi|170774835|gb|ACB32974.1| diguanylate cyclase [Leptothrix cholodnii SP-6]
          Length = 226

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 79/166 (47%), Gaps = 9/166 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+GL N   F ++L    ++++       ++  DID+FK IND  GH VGD VI
Sbjct: 31  LSSRDPLTGLPNRRQFEAALEQEIDRVARSGEPAMLLMLDIDHFKHINDTHGHAVGDLVI 90

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +   L         V R+GGEEFAA            +A  +R+ IE  +I I+ G  
Sbjct: 91  QAVGAALEDSVRPMDSVARIGGEEFAAVLPSCPAAFGHTVAERVRRNIEALRIAIAPGQI 150

Query: 216 IHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +T S G A      +      + RADQ LY AK  GRNR    S
Sbjct: 151 VTVTTSVGGAFAPQWVRSSGPLWLERADQQLYRAKSEGRNRTCLES 196


>gi|160875202|ref|YP_001554518.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella baltica OS195]
 gi|160860724|gb|ABX49258.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS195]
 gi|315267395|gb|ADT94248.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS678]
          Length = 749

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 9/184 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQ 141
           S + E   +   I   +  D L+GL N +A    + S           S +  D+D FKQ
Sbjct: 299 SDISERKKAAKLIKYQANNDSLTGLANRNALFKQIQSLITSDSLTPGFSFMLMDLDNFKQ 358

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND  GH  GD ++  +  Q+       M   RLGG+EFA    G  +++E A LA  + 
Sbjct: 359 VNDTHGHDKGDALLVQVVRQICECLNDTMMFARLGGDEFALLLPGIVNQKELAQLAETIN 418

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           K +    + ++ G  ++ ++S GIA        +  ++  ADQA+Y++K +GRNR   F+
Sbjct: 419 KHVAKRYV-LADGKGVYSSVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFT 477

Query: 260 DIEN 263
           +   
Sbjct: 478 EQMQ 481


>gi|56479050|ref|YP_160639.1| hypothetical protein ebA6322 [Aromatoleum aromaticum EbN1]
 gi|56315093|emb|CAI09738.1| hypothetical protein ebA6322 [Aromatoleum aromaticum EbN1]
          Length = 927

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 13/182 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           + +  L     ++ +++  D L+ L N + +   L           + ++I + D+D FK
Sbjct: 725 TDITPLKDHQKQLERIAYHDPLTNLPNRALYADRLQQAMSQCSRRGQHVAIAYIDLDGFK 784

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            +NDN GH VGD+++  ++ +L  V      + RLGG+EFAA  +  ++  +   +   L
Sbjct: 785 AVNDNHGHHVGDQLLVSIALRLREVLREGDTLARLGGDEFAAVLVDLNNPADCEPVLERL 844

Query: 200 RKIIENSQINISSGP-SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
              I  +   +  G   + ++ S G+    H +     ++  AD A+Y AK++G+N    
Sbjct: 845 ---IHAAAAPVPVGTLMLGVSASVGVTLFPHDKVDADELVRHADTAMYRAKRAGKNTYRF 901

Query: 258 FS 259
           F 
Sbjct: 902 FD 903


>gi|118579339|ref|YP_900589.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pelobacter propionicus DSM
           2379]
 gi|118502049|gb|ABK98531.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pelobacter propionicus DSM 2379]
          Length = 718

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 25/208 (12%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           I+L+ G I    +    ++  +I  L+  D L+GL N   F   L         +  +L+
Sbjct: 243 ITLVSGTI--QDITSRKLAEEKIRYLAYYDSLTGLPNRVLFKEHLRRALATSEQHKRQLA 300

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV------------GRLGGE 178
           I+  D+D FK IND+ GH  GD ++  ++D+L +       V             RLGG+
Sbjct: 301 IMLLDLDRFKGINDSLGHDAGDLLLQQVADRLRLRVRPYDTVSRDSEEQRDSLIARLGGD 360

Query: 179 EFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTI 236
           EF     G ++ + AA +A  + + +E       +G  + I+ S GI+   H    +  +
Sbjct: 361 EFTILLEGITTPEAAARVARRVIEALEA--PFALNGNEVFISCSIGISIYPHDGTDLEIL 418

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENN 264
           +  AD A+Y AK  G +    ++   N+
Sbjct: 419 VKNADVAMYCAKDLGCSTFQFYTQEMNS 446


>gi|291279366|ref|YP_003496201.1| signal transduction response regulator [Deferribacter desulfuricans
           SSM1]
 gi|290754068|dbj|BAI80445.1| signal transduction response regulator [Deferribacter desulfuricans
           SSM1]
          Length = 427

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 80/175 (45%), Gaps = 10/175 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           ++  L      ++ L+ ID L+ L N   F             Y    SI+  DID FK 
Sbjct: 254 LIDMLETKNKMLTVLATIDDLTQLYNRRFFWELARKEENRYIRYKRDYSIIILDIDDFKM 313

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH +GD V+  +S  +         + R GGEEF      + +  A  +A  +R+
Sbjct: 314 INDTYGHDIGDTVLKEISKSVRSNIRKSDILARFGGEEFIILLPETEKNGAKAVAEKIRQ 373

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            I + Q        +HIT+S G++ R     +   I  AD  LY AK SG+N+VV
Sbjct: 374 SINDKQFTHF---KLHITVSLGVSSRTEANDLEETIKIADNRLYKAKNSGKNKVV 425


>gi|218698710|ref|YP_002406339.1| diguanylate cyclase AdrA [Escherichia coli IAI39]
 gi|218368696|emb|CAR16436.1| putative diguanylate cyclase [Escherichia coli IAI39]
          Length = 371

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|193068692|ref|ZP_03049653.1| MASE2 domain/diguanylate cyclase [Escherichia coli E110019]
 gi|192958055|gb|EDV88497.1| MASE2 domain/diguanylate cyclase [Escherichia coli E110019]
          Length = 371

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|186474171|ref|YP_001861513.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia phymatum STM815]
 gi|184196503|gb|ACC74467.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia phymatum STM815]
          Length = 372

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L  +   + +L++ D L+GL N       L +   +       +S++  D+D FK  N
Sbjct: 182 QQLLEANLELRKLTQSDGLTGLSNRRYLDEYLNAEWRRGMRAQSEVSLLMLDVDNFKPYN 241

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+V+  ++  +            R GGEEFA    G++     +LA  +R  
Sbjct: 242 DTYGHVAGDEVLKQIASTVEGCLGRPGDLAARFGGEEFAVVLPGTAAGGTRLLAEKIRLE 301

Query: 203 IENSQINISSGPSI-HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +E  +I  +   S  ++T+S G A         ++T+I  AD ALY AK+ G+NRV  
Sbjct: 302 VEALRIPHAGSSSGNYVTVSVGCATLVPAPDAQMTTLIETADLALYRAKRDGKNRVAA 359


>gi|91793233|ref|YP_562884.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91715235|gb|ABE55161.1| diguanylate cyclase [Shewanella denitrificans OS217]
          Length = 339

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 94/176 (53%), Gaps = 10/176 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQI 142
           L  L    + +S+++  D L+ L N  A+       +  +N+     S++  DID FK  
Sbjct: 162 LSRLKEEMDNLSKVAMTDELTSLNNRRAYELFAVEQVAKFNQTQTVCSLLMIDIDLFKGF 221

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH +GDKV+A+++  L        FV R GGEEF     G+  Q+A  LAN+LR++
Sbjct: 222 NDTYGHLIGDKVLAYVALSLKQGVKGADFVARYGGEEFVILLPGTDLQDAVTLANNLREL 281

Query: 203 IENSQINISSGPS---IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + + Q+ +          +T+S G+A     +   T++ RAD+ LY AK++GR+ V
Sbjct: 282 VSHKQLTVGKEKKQQLGKVTVSIGVASIQTGDDADTLLSRADEKLYEAKQAGRDCV 337


>gi|333003053|gb|EGK22607.1| cellulose synthesis regulatory protein [Shigella flexneri VA-6]
          Length = 558

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LLL  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G++  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 536 LADRRLYLAKQAGRNRV-FASD 556


>gi|254505767|ref|ZP_05117913.1| sensory box/ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219551420|gb|EED28399.1| sensory box/ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 303

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 65/191 (34%), Positives = 94/191 (49%), Gaps = 12/191 (6%)

Query: 73  IISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124
           II I    ++G I   + + +L     ++++L+  D L+ L N                 
Sbjct: 112 IICINTKKVIGLIGVSTDITDLVNMREKLAELANTDELTKLCNRRKLWQFFSSAYHQASE 171

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
            N  LS +  DID+FK+IND  GH  GDKVI  L+D +     +    GR+GGEEF    
Sbjct: 172 LNTPLSCIVIDIDHFKKINDAHGHDFGDKVIVELADIIRRNLRSTDCCGRIGGEEFLIVL 231

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQA 243
             +S Q A  +A  LR   +NS +N  + P    TIS G+ E   ++     +  RADQA
Sbjct: 232 SNTSAQGAHDIAERLRTNFQNSPLNHVTAP---FTISCGVTELTPEDCDFFALYRRADQA 288

Query: 244 LYVAKKSGRNR 254
           LY AK +GRN+
Sbjct: 289 LYDAKHNGRNK 299


>gi|187477525|ref|YP_785549.1| signaling/response regulator protein [Bordetella avium 197N]
 gi|115422111|emb|CAJ48635.1| putative signaling/response regulator protein [Bordetella avium
           197N]
          Length = 336

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 11/177 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+GL N       L            ++S++  D+D+FK  N
Sbjct: 156 QKLLETNMELRRLTNSDGLTGLGNRRYLDEYLAAEWARAYREQHEISLLMIDVDHFKLFN 215

Query: 144 DNFGHPVGDKVIAFLS-DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+ +  ++   L     +     R GGEEFA    G +   A + A  LR+ 
Sbjct: 216 DLYGHIAGDEALKRVATAILACCDRSTDLAARFGGEEFAMVLPGKAAGSARLTAEKLRRS 275

Query: 203 IENSQINIS-SGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +E  Q+    SG    +T+S G++     + +P + +I +AD+ LY AK+ GRNRVV
Sbjct: 276 VEAMQLPHEGSGAGSWLTVSIGVSTVTPRNGQPFTDLIEQADRGLYEAKRQGRNRVV 332


>gi|300698195|ref|YP_003748856.1| signal transduction ggdef domain transmembrane protein [Ralstonia
           solanacearum CFBP2957]
 gi|299074919|emb|CBJ54488.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum CFBP2957]
          Length = 505

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 101/230 (43%), Gaps = 14/230 (6%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
           I     I ++ L    +   +      +  + L++ ++ I + + +     L+    +  
Sbjct: 267 IGDYPLIVSVGLATEDIYAEWRERARWIGGIVLLLDAVLIGMSIQF--AKQLRRRMEAEQ 324

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++ L+  D L+GL    A  S+L          ++ L+++  D+D FK  ND +GH  G
Sbjct: 325 KLAWLANTDGLTGLGTRRALDSALEAEWQRANRQHQPLAVLMIDVDEFKHYNDRYGHAAG 384

Query: 152 DKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D V+  ++  +   +     F GR GGEEF      +    A  +A  +R  +  +    
Sbjct: 385 DTVLRTVARCVNDSIRRPGDFAGRYGGEEFCVLLPNTDLPGAQRMAEIIRSTVLAAGEPN 444

Query: 211 SSGPSIHITISAGIAERCH----KEPISTIIYRADQALYVAKKSGRNRVV 256
           +      +T+S G+A         +  + +++RAD  LY AK SGRN V+
Sbjct: 445 AGSRHGRLTVSIGVAVHGGRSEAGDTPARLLHRADLQLYEAKSSGRNLVM 494


>gi|260219441|emb|CBA26286.1| hypothetical protein Csp_E33740 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 530

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 10/183 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
            S+L  L     ++  +SR D L+G+ N       L         + + LS++  D+D+F
Sbjct: 347 NSLLLVLHEQVRKLESMSRTDSLTGIANRRKLDERLPLEMSRLARHADPLSLLLIDVDHF 406

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+ ND +GHP GD  +  ++  L           R GGEEFA     + E  A  +A  +
Sbjct: 407 KKYNDLYGHPEGDVALKKVASVLAACSRQQDLAARFGGEEFAILLPNTDEAGALAVAEKI 466

Query: 200 RKIIENSQINISSGP-SIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVV 256
              +   +I  +  P S  +++S G       +P     +I +AD+ALYVAK+ GR R  
Sbjct: 467 MLEMSKLEIPHAQSPTSPRLSVSVGGTTWSEVQPGGAGALISQADKALYVAKRDGRMRAS 526

Query: 257 CFS 259
            ++
Sbjct: 527 FYN 529


>gi|225866030|ref|YP_002751408.1| putative sensory box/GGDEF family protein [Bacillus cereus 03BB102]
 gi|225790346|gb|ACO30563.1| putative sensory box/GGDEF family protein [Bacillus cereus 03BB102]
          Length = 430

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          NE ++++ FDID FK +
Sbjct: 254 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAV 313

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 314 NDTYGHDFGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 373

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q +  S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 374 IETKQFSGIS----KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCIY 425


>gi|209548401|ref|YP_002280318.1| diguanylate cyclase with PAS/PAC sensor [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209534157|gb|ACI54092.1| diguanylate cyclase with PAS/PAC sensor [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 622

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/189 (29%), Positives = 84/189 (44%), Gaps = 16/189 (8%)

Query: 83  GYISGSILKELFISYNRISQLSR-------IDCLSGLLNHSAFIS-------SLGSYNEK 128
             +  S +  +  S  R++QL+         D L+G+ N   F          +      
Sbjct: 424 ALVVVSDITSMKHSEERLTQLALKMKGLADTDALTGIANRRVFNEAISEEFARVRRAESS 483

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGS 187
           LS++  D+D+FK  ND +GH  GD  +  + + L  +         R GGEEFA    G+
Sbjct: 484 LSLLLIDVDHFKAYNDTYGHLEGDNCLRMIGEILRSIAKRPSDLAARFGGEEFAILLPGT 543

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYV 246
               A  LA  LR  +    I  S      +T+S G+A  C +    + ++  ADQALY 
Sbjct: 544 DRDGALRLARMLRSALHRRAIPHSESSKAIVTVSIGVANICDRFATPAELVSAADQALYA 603

Query: 247 AKKSGRNRV 255
           AKK GR+RV
Sbjct: 604 AKKHGRDRV 612


>gi|157374493|ref|YP_001473093.1| GGDEF family protein [Shewanella sediminis HAW-EB3]
 gi|157316867|gb|ABV35965.1| GGDEF family protein [Shewanella sediminis HAW-EB3]
          Length = 368

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 9/178 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
               +EL  +   + +LS  D L+GL N    +  L           + L+ +  D D+F
Sbjct: 189 QQRTQELIDANAHLEKLSVTDVLTGLPNRRFAMEKLTQLWQESVQSQQPLACMMLDADHF 248

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND +GH  GD+V+  LS +L     T   V RLGG+EF      +       +A  +
Sbjct: 249 KTVNDTYGHDAGDRVLCELSRELQHAVRTDDIVCRLGGDEFVIICPATDLNGIRHIATQV 308

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            + I    ++  SG S   +IS G++ R  + +  S +I RAD+A+Y+AK++G+N V 
Sbjct: 309 HEKIAAMTVSFGSG-SWQGSISVGVSSRTDQMQDYSELIKRADEAVYLAKQAGKNCVR 365


>gi|153827593|ref|ZP_01980260.1| GGDEF family protein [Vibrio cholerae MZO-2]
 gi|149737931|gb|EDM52836.1| GGDEF family protein [Vibrio cholerae MZO-2]
          Length = 306

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 8/176 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L+    ++  LS  D L+GL N    +  L           +    V  DID FK +N
Sbjct: 127 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVN 186

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH VGDKV+  +++ L   F +   V RLGG+EF      +       +A+ + + I
Sbjct: 187 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETDIAGGVYIADQVCRAI 246

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   I++ +      ++S G+A      +    ++  ADQA+Y+AK SG+NRV  F
Sbjct: 247 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHELLRAADQAVYLAKNSGKNRVCAF 302


>gi|49478505|ref|YP_038104.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330061|gb|AAT60707.1| possible sensory box/GGDEF family protein [Bacillus thuringiensis
           serovar konkukian str. 97-27]
          Length = 431

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          NE ++++ FDID FK +
Sbjct: 255 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAV 314

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 315 NDTYGHDFGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTLEKEAFQVAESLRFF 374

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q +  S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 375 IETKQFSGIS----KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCVY 426


>gi|45443488|ref|NP_995027.1| HmsT protein [Yersinia pestis biovar Microtus str. 91001]
 gi|229836995|ref|ZP_04457160.1| predicted diguanylate cyclase [Yersinia pestis Pestoides A]
 gi|45438357|gb|AAS63904.1| HmsT protein [Yersinia pestis biovar Microtus str. 91001]
 gi|229705938|gb|EEO91947.1| predicted  diguanylate cyclase [Yersinia pestis Pestoides A]
          Length = 390

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 118/256 (46%), Gaps = 22/256 (8%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLLLGYI 85
           +  S+F   FI+T+    N   F +   P   +  IL++   N+  +I +I + L+   +
Sbjct: 132 LLLSLFTIFFISTIALSDNFLAFCLHTAP-SAITVILLDDFHNIFRIIFTIMLPLIGFSL 190

Query: 86  SGSILKE-----------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LS 130
              +L+            L     + S LS ID L+ L N     S L +   +      
Sbjct: 191 HHLMLRRTDNFTRKLVDHLSNEREKFSDLSMIDPLTSLYNRRGLESKLETLLSQSPGNHY 250

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  DID+FK  NDN+GH +GD+ +  +S  +     +   V R GGEEF       SE+
Sbjct: 251 VLLLDIDHFKAYNDNYGHTMGDQALVRISAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEE 310

Query: 191 EAAILANDLRKIIENSQINISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAK 248
            A+ LA  +R+ +    I       +   +T+SAGI+     +  +++   AD+ALY AK
Sbjct: 311 YASQLAERVRQRVLGLDIPHVFNHKVSTTVTLSAGISPLQAYDLAASL-KAADEALYRAK 369

Query: 249 KSGRNRVVCFSDIENN 264
           ++GRN +    D  +N
Sbjct: 370 RNGRNNIEFAKDELSN 385


>gi|323493890|ref|ZP_08099007.1| sensory box/GGDEF family protein-like protein [Vibrio brasiliensis
           LMG 20546]
 gi|323311831|gb|EGA64978.1| sensory box/GGDEF family protein-like protein [Vibrio brasiliensis
           LMG 20546]
          Length = 633

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 98/205 (47%), Gaps = 19/205 (9%)

Query: 64  ILVENLSLVIISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           ++ E L +  +     ++  Y++  + +       NR+ +LS  D ++ L N   F + +
Sbjct: 429 LITEILRIQTVRDRYGIIQFYVASFVDISHRKELENRLRELSEKDAMTSLWNRRKFDAEM 488

Query: 123 GSY---------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            S          NE  ++   DID+FK+IND +GH  GD+VI  +++ L         + 
Sbjct: 489 QSQVQRTKRYKQNEVTALALIDIDHFKRINDTYGHDRGDEVIKAVANSLTHHLRETDIIA 548

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R+GGEEFA     ++  EA ++ N LR  I            ++IT+SAGI E       
Sbjct: 549 RIGGEEFAIIMPHTALAEAEVVVNRLRTAINLES-------DLNITVSAGITELS--SSS 599

Query: 234 STIIYRADQALYVAKKSGRNRVVCF 258
                RAD ALY +K SGRN+V  F
Sbjct: 600 EQTYKRADIALYESKSSGRNQVSVF 624


>gi|304409445|ref|ZP_07391065.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS183]
 gi|307303803|ref|ZP_07583556.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica BA175]
 gi|304351963|gb|EFM16361.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS183]
 gi|306912701|gb|EFN43124.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica BA175]
          Length = 1015

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + +   + + I + +  D L+GL N    +  L              +++F D+D+FK
Sbjct: 566 SDITDKKQNEHLIWKQANYDTLTGLPNRRMLLEYLSSEVKNADRNRNHFALLFLDLDFFK 625

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           ++ND  GH +GD ++   + +L         V RLGG+EF          +    +A ++
Sbjct: 626 EVNDTLGHAMGDLLLIETAIRLKSCVRDADVVARLGGDEFTVVLSSMEDHKGIERVAENI 685

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
            + I   +  +    + +I+ S GI         I  ++  ADQA+Y AK  GRNR   F
Sbjct: 686 LRRIA--EPYVLGEETAYISASIGITLYPDDSTSIEGLLKHADQAMYAAKDQGRNRFNYF 743

Query: 259 SDIENNTC 266
           +       
Sbjct: 744 TPSMQEYA 751


>gi|289625137|ref|ZP_06458091.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289648694|ref|ZP_06480037.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330868009|gb|EGH02718.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 703

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 103/241 (42%), Gaps = 15/241 (6%)

Query: 39  IATVIFIANIFLFYI--GLTPFYGLEYILVENLSLVIISITISLLLGYI---SGSILKEL 93
           +A   F    F   +  GL+       +LV +LS++ I++   +L  ++   +  +   L
Sbjct: 193 MAAATFADGSFCGALPEGLSSDGLDRIVLVASLSILGIALLSCILDSHLETRTAVLANSL 252

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNF 146
             +   ++ L+  D L+GL N       +    +K        +++F D+D FK +ND F
Sbjct: 253 TEANQELTHLALHDNLTGLPNRVLLTDRIEQAMKKVSESGGCFALMFMDLDGFKPVNDAF 312

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD ++  ++ +L         + R+GG+EF         Q+A  +A   R++ E  
Sbjct: 313 GHHTGDLLLRQVALRLRNNLHRHDTLARIGGDEFVLLVELHDPQDALAVAT--RQVNEIG 370

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                    + I++S GI     +      ++  AD A+Y  K +G+N    F    N+ 
Sbjct: 371 NPFTIGEHQLQISLSIGICMYPGNGNTQHELLINADAAMYHTKAAGKNGYSFFDASMNSN 430

Query: 266 C 266
            
Sbjct: 431 A 431


>gi|258624543|ref|ZP_05719483.1| GGDEF family protein [Vibrio mimicus VM603]
 gi|258583158|gb|EEW07967.1| GGDEF family protein [Vibrio mimicus VM603]
          Length = 352

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 72/265 (27%), Positives = 117/265 (44%), Gaps = 30/265 (11%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           +W C       F P  F I+ S  F+   +++  I              G+ Y  ++N  
Sbjct: 98  VWSC-------FVPILFYIFTSARFAFLTSSLFLILQ-----------SGIVYWQLQNEP 139

Query: 71  LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSY 125
           L+  S+ + L   YI   ++  ++    R     +  L+  D L+   N  +  +S   +
Sbjct: 140 LISWSVLLHLSFAYIGIWVVSHVYEQNRRKIENSLLYLASRDPLTSAHNRLSLTTSFQHF 199

Query: 126 NE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            +      LS++  D+D+FK IND FGH  GDKV+   +  L  V G    + R+GGEEF
Sbjct: 200 EQFNDQTTLSLLVIDLDFFKSINDQFGHDTGDKVLIETTRLLAQVVGDNN-LYRIGGEEF 258

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                  S ++A  +   LR II            + +TIS G+ E    + ++ ++  A
Sbjct: 259 CVTLFDQSLEQAERVCERLRAIISQHIFAFGD-KRVQVTISIGVCEYQPGDQLNDLLKFA 317

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D  LY AKK+GRN+V  F   +  T
Sbjct: 318 DIELYRAKKAGRNQVRLFKHAQTQT 342


>gi|238749612|ref|ZP_04611117.1| hypothetical protein yrohd0001_29300 [Yersinia rohdei ATCC 43380]
 gi|238712267|gb|EEQ04480.1| hypothetical protein yrohd0001_29300 [Yersinia rohdei ATCC 43380]
          Length = 441

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/188 (29%), Positives = 85/188 (45%), Gaps = 11/188 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVF 133
           ++ Y S   + EL  S + +  LS+ D L+G+ N   F        ++       LS++ 
Sbjct: 248 VIWYGSFFDITELKQSESILKALSQTDVLTGVANRRHFDEIYQRVWKENCIKGGALSVLM 307

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            D D FK  ND +GH +GD  +  + + L   + G    + R GGEEF      S+  +A
Sbjct: 308 IDFDNFKSFNDFYGHAMGDVCLKSIVENLSKSIRGDSDILARYGGEEFIVLLAPSTLADA 367

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKK 249
             +A  +R  IE   I     P   +TIS G+A             +   AD+ALY AK 
Sbjct: 368 TAVAERMRNSIEELDIPHGMSPQGRVTISIGVASVSQPGGHLSAKDLSNAADKALYRAKN 427

Query: 250 SGRNRVVC 257
           +G+NRV  
Sbjct: 428 AGKNRVEV 435


>gi|159036349|ref|YP_001535602.1| diguanylate cyclase with GAF sensor [Salinispora arenicola CNS-205]
 gi|157915184|gb|ABV96611.1| diguanylate cyclase with GAF sensor [Salinispora arenicola CNS-205]
          Length = 742

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 76/172 (44%), Gaps = 11/172 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHP 149
           +    +LS  D L+GL N+     SL    E+       LS++  D+D FK IND  GH 
Sbjct: 498 HEEAQRLSLTDPLTGLWNYRYLRQSLRREVERATRFGRMLSVLVLDLDRFKHINDTHGHT 557

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+   + ++           R GGEEF      +    AAI+A  L   +  + I 
Sbjct: 558 AGDLVLVEFARRMRGEIREVDLAFRQGGEEFVVLLPETDALGAAIVAGRLGAAVRGTPIA 617

Query: 210 ISSGPS---IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +        + +T+S G+A    H      ++  AD+ALY AK SGR+    
Sbjct: 618 VGGLGEPVLVPVTVSIGVAVHPDHGGTGQEVLDAADEALYAAKASGRDTWRI 669


>gi|71278443|ref|YP_267424.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71144183|gb|AAZ24656.1| sensory box/GGDEF/EAL domain protein [Colwellia psychrerythraea
           34H]
          Length = 788

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 21/198 (10%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKL-SIVFFDIDYF 139
              + E     ++I +L+  D L+ L N       L       + +E+  ++ F D+D+F
Sbjct: 323 SRDITERKNHEDQIQRLAFYDSLTQLPNRRMLQDRLQLLVTTSARDERFNALFFIDLDHF 382

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE------AA 193
           K +ND  GH +GD+++  ++ ++         V RLGG+EF A      E E      A 
Sbjct: 383 KTLNDTQGHNMGDQLLIAVAARIQDSVRDEDIVARLGGDEFVALISNLGEDEATAGHVAE 442

Query: 194 ILANDLRKII-ENSQINISSGPS------IHITISAGIAERCHK-EPISTIIYRADQALY 245
            +A  +R  I +  +++I            H T S GI+           I+ +AD A+Y
Sbjct: 443 KVAEKIRLSICQPYKLSIKENVDANNEMIFHCTPSIGISLFKSNLTSPDEILKQADVAMY 502

Query: 246 VAKKSGRNRVVCFSDIEN 263
            AK +GRN +  F     
Sbjct: 503 QAKAAGRNAIRFFDPAMQ 520


>gi|300927855|ref|ZP_07143417.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
 gi|300464140|gb|EFK27633.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
          Length = 430

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 258 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|261211055|ref|ZP_05925345.1| GGDEF family protein [Vibrio sp. RC341]
 gi|260840030|gb|EEX66630.1| GGDEF family protein [Vibrio sp. RC341]
          Length = 372

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 8/179 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L+    ++  LS  D L+GL N    +  L           +  + V  D+D FK +N
Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWSLAQDNRQPFACVMVDVDGFKAVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGD+V+  L+  L   F +   V RLGG+EF      ++   A  +A  +   I
Sbjct: 253 DLYGHDVGDRVLTTLAHTLRDHFRSDDLVCRLGGDEFLVLCPETNTLGAVHIAQAVCHAI 312

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +   I+I        ++S G+AE   K +    ++  ADQA+Y+AK  G+NRV  F+ +
Sbjct: 313 QQHVISIEGNLCWQGSVSMGVAEFDPKMKDHHELLRAADQAVYLAKHGGKNRVCSFNSV 371


>gi|163738700|ref|ZP_02146114.1| diguanylate cyclase, putative [Phaeobacter gallaeciensis BS107]
 gi|161388028|gb|EDQ12383.1| diguanylate cyclase, putative [Phaeobacter gallaeciensis BS107]
          Length = 598

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 78/175 (44%), Gaps = 8/175 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
            +++   S  D L+GL N      +L             LSI+  D+D+FK+ NDN GH 
Sbjct: 400 RDQLHDQSVRDPLTGLFNRRHMTETLRKSIGNSQNSGTPLSIIAVDVDHFKKFNDNHGHD 459

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  +   L           R GGEEF     G+S+++    A  LR+ +E   + 
Sbjct: 460 AGDMVLRAVGSVLEQACDGDEVACRPGGEEFTLILPGASQEDVMTKAELLRQAVEAIVVR 519

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                   I+IS G+A    H      ++  +D+ALY AK  GRN+V   S  E 
Sbjct: 520 YGEKALPGISISLGVAHYPRHGTMPQDLLRASDEALYEAKAKGRNQVCVASSAEQ 574


>gi|217975113|ref|YP_002359864.1| diguanylate cyclase [Shewanella baltica OS223]
 gi|217500248|gb|ACK48441.1| diguanylate cyclase [Shewanella baltica OS223]
          Length = 385

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 76/235 (32%), Positives = 116/235 (49%), Gaps = 17/235 (7%)

Query: 27  FMIYFSIFFSI-FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI 85
           +++Y +  F + FI   +F       +I L      +  LV    + II  T+ +LL   
Sbjct: 155 WLMYSTGLFGVGFIVRALFCYVKPELFIHLVAKSSFQSGLVIAGMIYIIFSTVVILLV-- 212

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQ 141
                  L      +S L+  D L+GL N  AF+ +    + S N  +S++  D+D FK+
Sbjct: 213 ------RLDRLNKELSTLASQDSLTGLFNRRAFMHNATSIIASENFPVSVLMLDLDNFKK 266

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH VGD V+   +D L         +GR GGEEFAA    +  ++A +++  LR 
Sbjct: 267 INDVHGHNVGDTVLKLCADALQDGLKQYGIIGRFGGEEFAAILPRADSEQALVVSEKLRL 326

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            IE   +N    P I ++IS G+A       I  ++ RAD+ALY AK  GRN+V+
Sbjct: 327 AIETINVN----PDIRLSISIGVATSSSVSSIEPLLIRADKALYEAKSKGRNQVI 377


>gi|39997025|ref|NP_952976.1| sensory box/response regulator [Geobacter sulfurreducens PCA]
 gi|39983913|gb|AAR35303.1| sensory box/response regulator [Geobacter sulfurreducens PCA]
          Length = 660

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 23/196 (11%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQ 141
            + E  ++  RI  L+  D L+ L N   F   +             ++++F D+D+FK+
Sbjct: 206 DITERTLAEERIRYLAHHDTLTALPNRFQFEERMEQALAFAQRNGFMMAVLFLDLDHFKK 265

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPM------------FVGRLGGEEFAAAALG-SS 188
           +ND  GH  GD+++   + +L+                   F+ R+GG+EF       + 
Sbjct: 266 VNDTLGHHAGDRLLQEAAGRLMKCLRRSDTLTHASREDASPFISRMGGDEFTILLTDLAH 325

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVA 247
            Q+AA ++  +   +  S+  +  G  + +  S GI+      E    ++  AD A+Y A
Sbjct: 326 PQDAARVSQRIITAL--SKRYVIGGHEVFVGASIGISLFPSDGEDCDQLLRNADTAMYHA 383

Query: 248 KKSGRNRVVCFSDIEN 263
           K+ GRN    +S   N
Sbjct: 384 KELGRNTYQYYSGSMN 399


>gi|331016194|gb|EGH96250.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 786

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 88/175 (50%), Gaps = 10/175 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +L      +  LS  D L+G  N   F   +         +   LSI+  DID+FK
Sbjct: 610 SDITDLKRVEEELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSIIMLDIDHFK 669

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +A  LA  LR
Sbjct: 670 RINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVVCPGTRGGQAYQLALSLR 729

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + + N  I    G    +T S GIA     E I T++ RAD  +Y AK++GR+RV
Sbjct: 730 EGLRNQVI---EGVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQAGRDRV 781


>gi|302877329|ref|YP_003845893.1| diguanylate cyclase [Gallionella capsiferriformans ES-2]
 gi|302580118|gb|ADL54129.1| diguanylate cyclase [Gallionella capsiferriformans ES-2]
          Length = 454

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 59/187 (31%), Positives = 91/187 (48%), Gaps = 13/187 (6%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------- 129
           +  L  +  G +++ L     ++ + S  D L+G  N   F     +   +         
Sbjct: 270 LMKLHAHELGELVQVLESKNIQLQEESVTDPLTGAGNRRLFNQVTEAEIGRFYRHQMATF 329

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  DID+FK+IND FGHP GD+V+  LS+++     T     R GGEEF      +  
Sbjct: 330 SVLMLDIDFFKKINDVFGHPFGDEVLKTLSNRVKRRLRTSDVFARWGGEEFVVLLPTADI 389

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
             A++LA  +R  I +S +         +T+S G+AE    E    ++ R D ALY AK 
Sbjct: 390 NAASVLAERIRAEIADSPVF-----EHQVTVSIGVAEYQRGESQEALLQRVDIALYEAKN 444

Query: 250 SGRNRVV 256
           SGRN+VV
Sbjct: 445 SGRNKVV 451


>gi|229592005|ref|YP_002874124.1| putative regulatory protein [Pseudomonas fluorescens SBW25]
 gi|229363871|emb|CAY51345.1| putative regulatory protein [Pseudomonas fluorescens SBW25]
          Length = 801

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/184 (32%), Positives = 89/184 (48%), Gaps = 13/184 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSI 131
           +L  GY+S   + +L      +  LS  D L+G+ N   F   L          +  LS+
Sbjct: 618 TLWHGYVS--DISDLKRVEEELRALSITDSLTGIHNRRYFQDRLKAEMVRLNRTSGALSV 675

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK+IND  GH VGD V+  L  ++           RLGGEEF      +   +
Sbjct: 676 IMLDIDHFKRINDQHGHAVGDGVLQELCKRISQRLRRTDVFCRLGGEEFMVLCPHTDGDQ 735

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A  LA +L   + ++ +     P   +T S G+A     E I  ++ RAD A+YVAK+ G
Sbjct: 736 AYSLATELWASLRSAPME----PVGIVTASFGVASWRVDEGIDGLLLRADSAVYVAKQGG 791

Query: 252 RNRV 255
           R+RV
Sbjct: 792 RDRV 795


>gi|167567078|ref|ZP_02359994.1| GGDEF domain protein [Burkholderia oklahomensis EO147]
 gi|167571819|ref|ZP_02364693.1| GGDEF domain protein [Burkholderia oklahomensis C6786]
          Length = 311

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           + +E   +  ++ + +  D L+G+ N   F + L         Y   LS++ FD+D+FK 
Sbjct: 134 MQREREEAVAKLQEYANRDGLTGIANRRFFEARLRDEFERWQRYGGNLSVLLFDLDHFKA 193

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH VGD V+  ++ ++  V       GR GGEEFA     +S  EA  +A  +R+
Sbjct: 194 INDRFGHVVGDNVLRVMARRVADVVRLQDTFGRFGGEEFALLLPCTSLDEAMHVAEKIRQ 253

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
            I N+ I  + G  + +T S G A          T++  AD ALY AK+ GRN  V F
Sbjct: 254 TIGNTPIE-AEGVRVPVTASVGGAAAHAGALTHETLVNEADAALYRAKRQGRNCSVAF 310


>gi|26248226|ref|NP_754266.1| hypothetical protein c2374 [Escherichia coli CFT073]
 gi|237705915|ref|ZP_04536396.1| cellulose synthesis regulatory protein [Escherichia sp. 3_2_53FAA]
 gi|81476029|sp|Q8FGJ7|YEDQ_ECOL6 RecName: Full=Cellulose synthesis regulatory protein
 gi|26108630|gb|AAN80833.1|AE016762_86 Hypothetical protein yedQ [Escherichia coli CFT073]
 gi|226900672|gb|EEH86931.1| cellulose synthesis regulatory protein [Escherichia sp. 3_2_53FAA]
          Length = 569

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LLL  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 367 LTLLWALFTSMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAK 426

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 427 LCHTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEEF 486

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G++  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 487 CVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 546

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 547 LADRRLYLAKQAGRNRV-FASD 567


>gi|228992783|ref|ZP_04152709.1| Sensory box/GGDEF family protein [Bacillus pseudomycoides DSM
           12442]
 gi|228767115|gb|EEM15752.1| Sensory box/GGDEF family protein [Bacillus pseudomycoides DSM
           12442]
          Length = 431

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 11/178 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           + + EL   Y    QL+ ID L+ + N   F   L          N+ ++++ FDID FK
Sbjct: 253 TDITELDELYQEQEQLAAIDSLTEIYNRLKFQQLLEEKWKSEKRVNQMMALILFDIDDFK 312

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD  +  L++ +     +     R GGE+F    + ++E+EA  +A  LR
Sbjct: 313 KVNDTYGHDFGDLALIQLAELMKSKIASQHIFARWGGEKFIILVINTTEKEAFQVAESLR 372

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             IE  Q +  S     +T S G+A          +I RAD ALY AKK+G+N+V  +
Sbjct: 373 FFIETKQFSSIS----KLTASFGVALYEQGMTKEELIQRADIALYEAKKNGKNQVRLY 426


>gi|170697745|ref|ZP_02888832.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
 gi|170137360|gb|EDT05601.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
          Length = 452

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 67/259 (25%), Positives = 117/259 (45%), Gaps = 13/259 (5%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           L +W+ +   L +    +  +  ++   + IA +  + +  L  +  T  + + + L   
Sbjct: 196 LVVWMLNALALVAVL-VSGRLRTTLDLWLAIAVLACLTDTTLNLLS-THRFTIGWYLARV 253

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------S 121
            S+    I + +L   ++  + + LF ++  + + S  D L+G  N S F          
Sbjct: 254 FSMFTPGILVCVLAWEVT-MLYQRLFEAHTMLIRSSARDGLTGAFNRSHFNDHFHTLFLQ 312

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEF 180
                E LS++  D+D+FK  ND FGH  GD  +  +++ L      P   V R GGEEF
Sbjct: 313 ARRQGEPLSLLMVDVDHFKAYNDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEF 372

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIY 238
           A     +  + A ++A + R+ +    + + S P+  +++S G A     E      +I 
Sbjct: 373 AIVLPNTGARGARLVAEEAREAVLRLDLAMPSSPAGRVSVSVGCATVSADELSTPDALIE 432

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD ALY AK  GRNRVV 
Sbjct: 433 AADAALYRAKDGGRNRVVA 451


>gi|312173166|emb|CBX81421.1| Protein adrA [Erwinia amylovora ATCC BAA-2158]
          Length = 532

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 83/164 (50%), Gaps = 9/164 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+   ++ D L+GLLN     + L    S  +  +++  DID FK +ND FGH  GD VI
Sbjct: 361 RLKSEAQTDPLTGLLNRRGLDAVLDYFLSTGQPFALLALDIDRFKGVNDAFGHAAGDTVI 420

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++ QL +       + R GGEEF     G+    A ++A  +RK IE  QI+      
Sbjct: 421 KTVAQQLGLGARQSDILCRNGGEEFLMILPGADRDRALMIAERVRKRIEQFQIDAIG--- 477

Query: 216 IHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
            ++TIS GI+         +     +AD+ALY AK +GRN VV 
Sbjct: 478 -NVTISIGISFWSSDSENDMHDAFGQADEALYRAKNTGRNCVVM 520


>gi|157964306|ref|YP_001499130.1| response regulator PleD [Rickettsia massiliae MTU5]
 gi|157844082|gb|ABV84583.1| Regulatory components of sensory transduction system [Rickettsia
           massiliae MTU5]
          Length = 456

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 89/191 (46%), Gaps = 13/191 (6%)

Query: 79  SLLLGYISGSILKELFISYNR--ISQ---LSRIDCLSGLLNHSAFISSLGSYNEK----- 128
           S LL  I   + ++ +    R  + Q   L+  D L+GL N   F   L    EK     
Sbjct: 264 SELLARIRTQLKRKQYQDNLRNDLEQSVNLAAKDGLTGLFNRRYFDIHLKQMIEKANKES 323

Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             L ++  DID FK +ND +GH  GDKV+  +S  L         + R GGEEF      
Sbjct: 324 IKLYLLMCDIDNFKHVNDTYGHQAGDKVLTIVSRILKNTLRVTDLIARFGGEEFTILLTD 383

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALY 245
               +A   A  +R  IE    +I      +  TIS G+ +   +E I + I RAD+A+Y
Sbjct: 384 IDISKAIETAERVRVKIEYMDFHIEDQIEPLKNTISIGVTKYKKEESIESFIERADKAMY 443

Query: 246 VAKKSGRNRVV 256
            AK +G+N+VV
Sbjct: 444 EAKTTGKNKVV 454


>gi|332531707|ref|ZP_08407592.1| diguanylate cyclase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038683|gb|EGI75125.1| diguanylate cyclase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 367

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 109/242 (45%), Gaps = 14/242 (5%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIIS-ITISLLL 82
           P +F +    + S+F +TV F    +L Y+       +    + NL  V ++ I I    
Sbjct: 113 PFSFFLVGRNWGSLF-STVAFAICAYLVYLQQQQTVTIGLGSLFNLIEVSLAHILIFRFY 171

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFD 135
                S    L I    I  L+  D L+GL N   F   L         +     ++  D
Sbjct: 172 EKTRFSAYTRLSIRNLEIQHLAETDKLTGLYNRQKFDFELSQLIAKNDVFKTPHCLLICD 231

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK IND +GH VGD V+   +  L    G    + R GGEEF      +S  ++A  
Sbjct: 232 IDHFKNINDTYGHLVGDNVLTEFAKILKSRMGNDALIARWGGEEFTIILSNTSLNDSAKK 291

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A+DLRK I  + +      ++  TIS G+A     + +  ++ RAD ALY AK +GRN+V
Sbjct: 292 ADDLRKYIAENTVT-----NVAFTISIGLATIQKDDTVLKLLERADIALYKAKNNGRNKV 346

Query: 256 VC 257
             
Sbjct: 347 CV 348


>gi|330501458|ref|YP_004378327.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas
           mendocina NK-01]
 gi|328915744|gb|AEB56575.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas mendocina
           NK-01]
          Length = 548

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 9/183 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDID 137
           +S   L+ + + + ++ + +  D L+GL N                  +  L++   D+D
Sbjct: 367 VSEERLRTISVLHEQLREQALCDPLTGLYNRRYLDEFFDRELARAQRESLPLALALIDLD 426

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK++ND  GH VGD V+  ++  L+    +   V R+GGEEF     G   Q A +   
Sbjct: 427 HFKRLNDECGHLVGDDVLKAVAQHLLDNLRSTDAVFRIGGEEFLLILPGLDAQAAEVRLE 486

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            LR  + +       G  + +T+SAGIA    + E +  ++  AD ALY AK+ GRNR+ 
Sbjct: 487 SLRLQLADMDQPTRIGA-LPVTLSAGIAVWPTNGEKLDELLQAADMALYSAKRGGRNRIA 545

Query: 257 CFS 259
             S
Sbjct: 546 LAS 548


>gi|325522176|gb|EGD00826.1| putative diguanylate cyclase [Burkholderia sp. TJI49]
          Length = 492

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 10/196 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128
           +LV       + L  +  S L+    + + +  L+R D L+GL N  +F   L     + 
Sbjct: 290 ALVATFGAAFIALSVLLSSQLRRRMRAESELILLARTDGLTGLDNRRSFGEVLDREWRRA 349

Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFA 181
                  S++F D+D FK  ND +GH  GD  +A ++  +      P     R GGEEF 
Sbjct: 350 RRMRSVFSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGDSIRRPADVAARYGGEEFV 409

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYR 239
                +SE  AA +A  +R  I    +  +      +T S G+A     H +    II  
Sbjct: 410 VLLPDTSENGAAQIAERIRLAINELGLEHAGSEYGRVTASIGLASWTPEHDDDPGAIIKA 469

Query: 240 ADQALYVAKKSGRNRV 255
           AD+ALY AK +GRN++
Sbjct: 470 ADEALYYAKATGRNKI 485


>gi|291614121|ref|YP_003524278.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans
           lithotrophicus ES-1]
 gi|291584233|gb|ADE11891.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans
           lithotrophicus ES-1]
          Length = 566

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 90/204 (44%), Gaps = 25/204 (12%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSI 131
            +LLG +    + E   +  +I  L+  D L+ L N                  N   ++
Sbjct: 365 MILLGVM--RDITERKKAEEQIRNLAFYDTLTQLPNRRLLQDRFSLVISACKRNNRYAAL 422

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA------L 185
           +F D+D FK +ND  GH VGD ++  ++ ++V        V R GG+EF           
Sbjct: 423 MFIDLDNFKPLNDEHGHDVGDILLVEVARRIVKCVREVDTVSRFGGDEFVVMLSELDTDK 482

Query: 186 GSSEQEAAILANDLRKII-ENSQINISSGPSI-------HITISAGIAER-CHKEPISTI 236
             S  +A ++A  +R+ + E  ++ +S    +       H T S G+     H      +
Sbjct: 483 DISVDQANVVAEKIRQSLGETYRLAVSKKDGVEPHIVEHHCTASIGVVLFNDHGVTQEDL 542

Query: 237 IYRADQALYVAKKSGRNRVVCFSD 260
           I  AD A+Y AK +GRNRV CF+D
Sbjct: 543 IRLADAAMYQAKAAGRNRV-CFAD 565


>gi|157376349|ref|YP_001474949.1| signal transduction protein [Shewanella sediminis HAW-EB3]
 gi|157318723|gb|ABV37821.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain-like protein [Shewanella sediminis
           HAW-EB3]
          Length = 951

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 94/212 (44%), Gaps = 12/212 (5%)

Query: 62  EYILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           + I  E L++  +      +  Y++  + +  +     ++ +++  D L+ L N +    
Sbjct: 470 DEIYPEMLTISAVLDATGKVQNYVALFNDITAIKEHQEQLERIAHYDTLTNLPNRTLLAD 529

Query: 121 SL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L             L++VF D+D FK +ND +GH VGDK++  +S +L         + 
Sbjct: 530 RLTQSMVQVRRRKSSLAVVFLDLDKFKDVNDAYGHDVGDKLLIVISRRLKEALRDIDTLA 589

Query: 174 RLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE- 231
           R+GG+EF A  +   + ++   +   L +    S      G  + ++ S G+A       
Sbjct: 590 RIGGDEFVAVLMDIEKGEDCEPVLERLLEAASGS--VTVEGIMLKVSASMGVAIYPQDGI 647

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
               ++  ADQA+YVAK  G+N    F   +N
Sbjct: 648 DADQLLRHADQAMYVAKHEGKNCYHLFDTAQN 679


>gi|331657395|ref|ZP_08358357.1| putative GGDEF domain protein [Escherichia coli TA206]
 gi|331055643|gb|EGI27652.1| putative GGDEF domain protein [Escherichia coli TA206]
          Length = 410

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 238 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-LAQDYSLLLIDTDRFK 296

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 297 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 356

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 357 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 407


>gi|300918239|ref|ZP_07134844.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
 gi|300414582|gb|EFJ97892.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
          Length = 371

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVVYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|238758551|ref|ZP_04619727.1| Predicted diguanylate cyclase [Yersinia aldovae ATCC 35236]
 gi|238703251|gb|EEP95792.1| Predicted diguanylate cyclase [Yersinia aldovae ATCC 35236]
          Length = 366

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 73/269 (27%), Positives = 118/269 (43%), Gaps = 20/269 (7%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE 67
            L  W    K     S     +  S+F   FI+T+    N   F +   P       L +
Sbjct: 87  MLWAWQIILKYEYLGSNENNYLLLSLFMIFFISTIALSDNFLAFCLHTAPSALTVIFLDD 146

Query: 68  NLSLVIISITISL-LLGY------------ISGSILKELFISYNRISQLSRIDCLSGLLN 114
             ++  I  TI L L+G+             +  ++  L+    + S LS ID L+ L N
Sbjct: 147 FQNIFRILFTIMLPLIGFSLHHLMLRRSDDFTRKLVARLYNEREKFSDLSMIDPLTSLYN 206

Query: 115 HSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
                + L +   +      ++  DID+FK  NDN+GH +GD+ +  ++  +     +  
Sbjct: 207 RRGLENKLETLLSQSPGNHYVLLLDIDHFKAYNDNYGHTMGDQALVRVASAIRDAVRSRD 266

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH--ITISAGIAERC 228
            V R GGEEF       SE+ A+ LA  +R+ + +  I       +   +T+SAGI+   
Sbjct: 267 IVVRYGGEEFLVLLTHVSEEYASQLAERVRQRVLSLDIPHVFNHKVSTTVTLSAGISPLL 326

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +  S++   AD+ALY AKK GRN+V  
Sbjct: 327 AYDLASSL-KAADEALYRAKKDGRNKVAF 354


>gi|159897665|ref|YP_001543912.1| diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890704|gb|ABX03784.1| diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 582

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 89/179 (49%), Gaps = 10/179 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQI 142
           ++E       + +L+ ID L+GL N   F+                L+I+ FDID+FKQI
Sbjct: 404 MQERDRQRIELERLATIDSLTGLYNRRHFLGLAQSLLEQAWQAGNALAILLFDIDHFKQI 463

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH +GD+++  ++            +GR GGEEF       S  EA ++A  LR  
Sbjct: 464 NDRHGHHIGDQMLQLVATTAQAALRQSDLLGRYGGEEFVVMLTRVSNAEALLVAERLRSA 523

Query: 203 IENSQINISSGPSIHITISAGIA-ERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           IE   I   +  S+  +IS G+     H E P+  +I +AD ALY AK +GRN V  +S
Sbjct: 524 IEQL-ILTDNQQSVTTSISVGLTLSYPHAEIPLERLIQQADHALYQAKAAGRNNVQIYS 581


>gi|94263701|ref|ZP_01287509.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|93455900|gb|EAT06059.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
          Length = 833

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 92/184 (50%), Gaps = 12/184 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + ++     R+  ++  D L+GL N +     L            +L++ + D+D FK+
Sbjct: 386 DISKIKEQQQRLELIAHYDTLTGLPNRALLTDRLHHAMAQTFRRQTRLAVAYLDLDGFKE 445

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH VGD ++  L++++         +GRLGG+EF A     ++ E  +    L++
Sbjct: 446 INDTHGHDVGDFLLRTLAERMQHNMRESDTLGRLGGDEFIAIFQDLADDETCLPL--LQR 503

Query: 202 IIENSQINISSGPSI-HITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCF 258
           ++  + + +S   +I  ++ S G+      E      ++ +ADQA+Y AK++G+NR   F
Sbjct: 504 LLNAAALPVSYQETILQVSASLGVTFFPQSEKIDADQLLRQADQAMYQAKQAGKNRYHLF 563

Query: 259 SDIE 262
             ++
Sbjct: 564 DTVQ 567


>gi|39997629|ref|NP_953580.1| sensory box/response regulator [Geobacter sulfurreducens PCA]
 gi|39984521|gb|AAR35907.1| sensory box/response regulator [Geobacter sulfurreducens PCA]
 gi|298506568|gb|ADI85291.1| response receiver sensor diguanylate cyclase, PAS domain-containing
           [Geobacter sulfurreducens KN400]
          Length = 452

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 16/189 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
             + E  ++  R+  L+  D L+GL N   F   L           +  +++F D+D+FK
Sbjct: 254 RDITEKKLAKRRLEFLAHHDPLTGLANRVLFFDRLDVSLRQAERDRQCAALLFIDLDHFK 313

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
            +ND FGH  GD ++   + ++         V R+GG+EF       S E +AA++A  +
Sbjct: 314 GVNDVFGHDAGDVLLMEAARRIESCLRKADSVARMGGDEFTVILTRVSGEADAAMVAGKI 373

Query: 200 RKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
              IE   + ++ +G    +  S GI+          +++ +AD A+Y AK+ G+NR   
Sbjct: 374 ---IEALAVPVALAGGECTVGASIGISMYPLDAADAESLLRKADAAMYRAKRLGKNRFAF 430

Query: 258 FSDIENNTC 266
                ++ C
Sbjct: 431 ---AMHDPC 436


>gi|26247677|ref|NP_753717.1| hypothetical protein c1815 [Escherichia coli CFT073]
 gi|91210635|ref|YP_540621.1| hypothetical protein UTI89_C1612 [Escherichia coli UTI89]
 gi|117623593|ref|YP_852506.1| hypothetical protein APECO1_493 [Escherichia coli APEC O1]
 gi|227886222|ref|ZP_04004027.1| sensory box-containing diguanylate cyclase [Escherichia coli 83972]
 gi|237705371|ref|ZP_04535852.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|300971645|ref|ZP_07171518.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1]
 gi|301046188|ref|ZP_07193362.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1]
 gi|26108079|gb|AAN80279.1|AE016760_138 Hypothetical protein ydaM [Escherichia coli CFT073]
 gi|91072209|gb|ABE07090.1| hypothetical protein YdaM [Escherichia coli UTI89]
 gi|115512717|gb|ABJ00792.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|226900128|gb|EEH86387.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|227836426|gb|EEJ46892.1| sensory box-containing diguanylate cyclase [Escherichia coli 83972]
 gi|294493987|gb|ADE92743.1| sensory box-containing diguanylate cyclase [Escherichia coli
           IHE3034]
 gi|300301845|gb|EFJ58230.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1]
 gi|300411131|gb|EFJ94669.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1]
 gi|307627085|gb|ADN71389.1| hypothetical protein UM146_10070 [Escherichia coli UM146]
 gi|315289073|gb|EFU48471.1| diguanylate cyclase domain protein [Escherichia coli MS 110-3]
          Length = 430

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 80/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 258 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++ISS P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 --VSVAKVSISSLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|157160853|ref|YP_001458171.1| sensory box-containing diguanylate cyclase [Escherichia coli HS]
 gi|188493845|ref|ZP_03001115.1| sensory box-containing diguanylate cyclase [Escherichia coli 53638]
 gi|256022945|ref|ZP_05436810.1| hypothetical protein E4_06209 [Escherichia sp. 4_1_40B]
 gi|300948426|ref|ZP_07162529.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1]
 gi|300954594|ref|ZP_07167039.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1]
 gi|301022691|ref|ZP_07186541.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
 gi|157066533|gb|ABV05788.1| sensory box-containing diguanylate cyclase [Escherichia coli HS]
 gi|188489044|gb|EDU64147.1| sensory box-containing diguanylate cyclase [Escherichia coli 53638]
 gi|299881136|gb|EFI89347.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
 gi|300318428|gb|EFJ68212.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1]
 gi|300452101|gb|EFK15721.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1]
 gi|332343040|gb|AEE56374.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 430

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 258 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|16128370|ref|NP_414919.1| diguanylate cyclase for cellulose, biofilm, motility regulation
           [Escherichia coli str. K-12 substr. MG1655]
 gi|26246387|ref|NP_752426.1| diguanylate cyclase AdrA [Escherichia coli CFT073]
 gi|89107256|ref|AP_001036.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           W3110]
 gi|170021242|ref|YP_001726196.1| diguanylate cyclase AdrA [Escherichia coli ATCC 8739]
 gi|170079972|ref|YP_001729292.1| diguanylate cyclase [Escherichia coli str. K-12 substr. DH10B]
 gi|170683904|ref|YP_001742518.1| diguanylate cyclase AdrA [Escherichia coli SMS-3-5]
 gi|194438882|ref|ZP_03070967.1| MASE2 domain/diguanylate cyclase [Escherichia coli 101-1]
 gi|209917597|ref|YP_002291681.1| diguanylate cyclase AdrA [Escherichia coli SE11]
 gi|218703667|ref|YP_002411186.1| diguanylate cyclase AdrA [Escherichia coli UMN026]
 gi|227884611|ref|ZP_04002416.1| possible diguanylate cyclase [Escherichia coli 83972]
 gi|238899675|ref|YP_002925471.1| putative diguanylate cyclase [Escherichia coli BW2952]
 gi|253774633|ref|YP_003037464.1| diguanylate cyclase AdrA [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254160451|ref|YP_003043559.1| diguanylate cyclase AdrA [Escherichia coli B str. REL606]
 gi|256023997|ref|ZP_05437862.1| diguanylate cyclase AdrA [Escherichia sp. 4_1_40B]
 gi|293403503|ref|ZP_06647594.1| adrA [Escherichia coli FVEC1412]
 gi|293408528|ref|ZP_06652367.1| adrA [Escherichia coli B354]
 gi|293413636|ref|ZP_06656285.1| adrA [Escherichia coli B185]
 gi|297517446|ref|ZP_06935832.1| diguanylate cyclase AdrA [Escherichia coli OP50]
 gi|298379114|ref|ZP_06988995.1| adrA [Escherichia coli FVEC1302]
 gi|300900442|ref|ZP_07118612.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1]
 gi|300903354|ref|ZP_07121282.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|300930324|ref|ZP_07145736.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
 gi|300947970|ref|ZP_07162115.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1]
 gi|300988117|ref|ZP_07178554.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1]
 gi|301301529|ref|ZP_07207664.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|307137027|ref|ZP_07496383.1| diguanylate cyclase AdrA [Escherichia coli H736]
 gi|331640900|ref|ZP_08342035.1| protein AdrA [Escherichia coli H736]
 gi|331651313|ref|ZP_08352338.1| protein AdrA [Escherichia coli M718]
 gi|331661758|ref|ZP_08362681.1| protein AdrA [Escherichia coli TA143]
 gi|77416708|sp|P0AAP2|ADRA_ECOL6 RecName: Full=Protein AdrA
 gi|77416709|sp|P0AAP1|ADRA_ECOLI RecName: Full=Probable diguanylate cyclase AdrA; Short=DGC
 gi|26106785|gb|AAN78970.1|AE016756_153 Hypothetical protein yaiC [Escherichia coli CFT073]
 gi|1657581|gb|AAB18109.1| also previously sequenced by another group, GenBank Accession
           Number hypothetical protein in phoA 3' region
           [Escherichia coli str. K-12 substr. MG1655]
 gi|1786584|gb|AAC73488.1| diguanylate cyclase for cellulose, biofilm, motility regulation
           [Escherichia coli str. K-12 substr. MG1655]
 gi|85674526|dbj|BAE76166.1| predicted diguanylate cyclase [Escherichia coli str. K12 substr.
           W3110]
 gi|169756170|gb|ACA78869.1| diguanylate cyclase [Escherichia coli ATCC 8739]
 gi|169887807|gb|ACB01514.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170521622|gb|ACB19800.1| MASE2 domain/diguanylate cyclase [Escherichia coli SMS-3-5]
 gi|194422176|gb|EDX38178.1| MASE2 domain/diguanylate cyclase [Escherichia coli 101-1]
 gi|209910856|dbj|BAG75930.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218430764|emb|CAR11638.1| putative diguanylate cyclase [Escherichia coli UMN026]
 gi|227838697|gb|EEJ49163.1| possible diguanylate cyclase [Escherichia coli 83972]
 gi|238862236|gb|ACR64234.1| predicted diguanylate cyclase [Escherichia coli BW2952]
 gi|242376162|emb|CAQ30853.1| predicted diguanylate cyclase [Escherichia coli BL21(DE3)]
 gi|253325677|gb|ACT30279.1| diguanylate cyclase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972352|gb|ACT38023.1| predicted diguanylate cyclase [Escherichia coli B str. REL606]
 gi|253976561|gb|ACT42231.1| predicted diguanylate cyclase [Escherichia coli BL21(DE3)]
 gi|260450427|gb|ACX40849.1| diguanylate cyclase [Escherichia coli DH1]
 gi|281177556|dbj|BAI53886.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|284920192|emb|CBG33251.1| putative signal transduction protein [Escherichia coli 042]
 gi|291429356|gb|EFF02376.1| adrA [Escherichia coli FVEC1412]
 gi|291433694|gb|EFF06667.1| adrA [Escherichia coli B185]
 gi|291471706|gb|EFF14189.1| adrA [Escherichia coli B354]
 gi|298280227|gb|EFI21731.1| adrA [Escherichia coli FVEC1302]
 gi|300356088|gb|EFJ71958.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1]
 gi|300404649|gb|EFJ88187.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|300407531|gb|EFJ91069.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1]
 gi|300452469|gb|EFK16089.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1]
 gi|300461784|gb|EFK25277.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
 gi|300843026|gb|EFK70786.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|307552290|gb|ADN45065.1| putative transmembrane protein [Escherichia coli ABU 83972]
 gi|309700647|emb|CBI99943.1| putative signal transduction protein [Escherichia coli ETEC H10407]
 gi|315135068|dbj|BAJ42227.1| adrA [Escherichia coli DH1]
 gi|315256206|gb|EFU36174.1| diguanylate cyclase domain protein [Escherichia coli MS 85-1]
 gi|315294145|gb|EFU53496.1| diguanylate cyclase domain protein [Escherichia coli MS 153-1]
 gi|323938570|gb|EGB34819.1| diguanylate cyclase domain-containing protein [Escherichia coli
           E1520]
 gi|323963371|gb|EGB58933.1| diguanylate cyclase domain-containing protein [Escherichia coli
           H489]
 gi|331037698|gb|EGI09918.1| protein AdrA [Escherichia coli H736]
 gi|331051054|gb|EGI23106.1| protein AdrA [Escherichia coli M718]
 gi|331060180|gb|EGI32144.1| protein AdrA [Escherichia coli TA143]
          Length = 371

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|330949941|gb|EGH50201.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 615

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 66/271 (24%), Positives = 115/271 (42%), Gaps = 41/271 (15%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE-------------NLSLVIISI 76
           Y  +F  +F   V  +    L  + L     L  ++ E              L L I +I
Sbjct: 185 YHGMFHQMFRYAVSLLLGAGLLTMHLMGMKALRLVIPEGIELHVPSTENSQQLGLTIAAI 244

Query: 77  TISLLLGYISGS------------------ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
            +  + G IS +                  +L +L  +   + Q++  D L+ L+N   F
Sbjct: 245 PLLTIAGSISAAMADKKLQGKEHDLQRVNALLTQLDQARVSLQQVAHYDPLTNLINRRGF 304

Query: 119 ISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                   ++       L+++F DID+FK+IND+ GH  GD+++  +++++     T   
Sbjct: 305 NQIFAEKLQEHTFNKGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRTQDV 364

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           V R GG+EF         +EA  LA+ + + ++ +     +G  + +T S GIA      
Sbjct: 365 VARFGGDEFCILLSIPDYEEARHLAHRVMQKMKETI--ALAGRRMVMTTSIGIAVFPRDG 422

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E    ++  AD ALY +K  GRN V  F+  
Sbjct: 423 ETCDELLKHADLALYQSKDKGRNGVNFFNPA 453


>gi|320332762|ref|YP_004169473.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Deinococcus
           maricopensis DSM 21211]
 gi|319754051|gb|ADV65808.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Deinococcus
           maricopensis DSM 21211]
          Length = 596

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 20/204 (9%)

Query: 81  LLGYISGSILKELFISYN---------RISQLSRIDCLSGLLNHSAFISSLG-------S 124
           LL  ++  ++ EL +  N         R +  +  D L+GL N                 
Sbjct: 144 LLADLAAIVMDELELRRNVLTWQRAEARTAHQAHHDALTGLPNRLLLKDRADLAFRHAHR 203

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
                +++  D+D FK IND +GH VGD+V+   +++L         V R GG+EF    
Sbjct: 204 RGTIAAMLVVDLDGFKTINDTYGHLVGDEVLRLTAERLRDALRAEDTVARFGGDEFVVLL 263

Query: 185 LG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQ 242
                   AA +A  L   IE           + +  S GIA           ++  AD 
Sbjct: 264 SELRDPLNAARVAQQLLDAIE--PPMHFEDHEVQLHASVGIALYPTDARSFEELLRAADT 321

Query: 243 ALYVAKKSGRNRVVCFSDIENNTC 266
           A+Y AK+ GR +V   ++  ++  
Sbjct: 322 AMYGAKRKGRAQVCFHTEAMSSAA 345


>gi|301647301|ref|ZP_07247116.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|301074547|gb|EFK89353.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
          Length = 370

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|262173335|ref|ZP_06041012.1| GGDEF family protein [Vibrio mimicus MB-451]
 gi|261890693|gb|EEY36680.1| GGDEF family protein [Vibrio mimicus MB-451]
          Length = 338

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 108/220 (49%), Gaps = 21/220 (9%)

Query: 58  FYGLEYILVENLSLVIISITISLLLG----------YISGSI------LKELFISYNRIS 101
           F  LE +  E+LS+  +   I  L+           +++  +      +  L     ++ 
Sbjct: 117 FRELERVEQEDLSIEEVMTVIRRLISDSKDIRHSTNFLNNQLNAATHEISRLKEQLAQVQ 176

Query: 102 QLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           + +  D LSGL N  AF     +L   +  + ++  DID+FK +ND +GH  GD++I  +
Sbjct: 177 KDALFDSLSGLYNRRAFDGDMFTLIHADHPVCLIMLDIDHFKALNDTYGHLFGDQIIRAI 236

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217
           + +L  +    +   R GGEEFA      S + A   A  +R+ IE   + +  SG S+ 
Sbjct: 237 AKRLQSLCRDGVTAYRYGGEEFALITPNKSLRIARQFAESVRRSIEKLTVKDRRSGQSVG 296

Query: 218 -ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            IT S G+ E+   + + +++ RAD+ LY AK  GRNRV+
Sbjct: 297 NITASFGVVEKIDGDSLESLVGRADRLLYEAKNLGRNRVM 336


>gi|145600462|ref|YP_001164538.1| HmsT protein [Yersinia pestis Pestoides F]
 gi|145212158|gb|ABP41565.1| HmsT protein [Yersinia pestis Pestoides F]
          Length = 390

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 118/256 (46%), Gaps = 22/256 (8%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLLLGYI 85
           +  S+F   FI+T+    N   F +   P   +  IL++   N+  +I +I + L+   +
Sbjct: 132 LLLSLFTIFFISTIALSDNFLAFCLHTAP-SAITVILLDDFHNIFRIIFTIMLPLIGFSL 190

Query: 86  SGSILKE-----------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LS 130
              +L+            L     + S LS ID L+ L N     S L +   +      
Sbjct: 191 HHLMLRRTDNFTRKLVDHLSNEREKFSDLSMIDPLTSLYNRRGLESKLETLLSQSPGNHY 250

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  DID+FK  NDN+GH +GD+ +  +S  +     +   V R GGEEF       SE+
Sbjct: 251 VLLLDIDHFKAYNDNYGHTMGDQALVRISAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEE 310

Query: 191 EAAILANDLRKIIENSQINISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAK 248
            A+ LA  +R+ +    I       +   +T+SAGI+     +  +++   AD+ALY AK
Sbjct: 311 YASQLAERVRQRVLGLDIPHVFNHKVSTTVTLSAGISPLQAYDLAASL-KAADEALYRAK 369

Query: 249 KSGRNRVVCFSDIENN 264
           ++GRN +    D  +N
Sbjct: 370 RNGRNNIEFAKDELSN 385


>gi|71737883|ref|YP_273460.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558436|gb|AAZ37647.1| GGDEF domain protein [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 509

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 12/186 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIV 132
           L L ++    L+    + + ++ L+  D L+GL N                   ++LS++
Sbjct: 312 LWLTWLLCRELRRRHRAEDALASLAATDGLTGLDNRRQLDEAMETEWARAQRSGKQLSLL 371

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQE 191
             D+D+FK  N+  GH  GD+ +  ++  +   +      V R GGEEF      +    
Sbjct: 372 MIDVDHFKAFNERHGHQGGDEALRLIAQTISFNIRRPGDRVARYGGEEFVVVLPETELPG 431

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKK 249
           A ++A  +RK  E+  +   +     IT+S G+        + +      AD+ALY AK 
Sbjct: 432 AMMIAEKIRKAAESLPLFPDAQQ--PITVSIGVVSEMVRQGDKLEAFFGIADKALYQAKH 489

Query: 250 SGRNRV 255
            GRNRV
Sbjct: 490 KGRNRV 495


>gi|89094748|ref|ZP_01167683.1| sensory box/GGDEF/EAL domain protein [Oceanospirillum sp. MED92]
 gi|89081002|gb|EAR60239.1| sensory box/GGDEF/EAL domain protein [Oceanospirillum sp. MED92]
          Length = 711

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 11/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFK 140
             + E      +I   +  D L+ L N        +          +KL+++F D+D FK
Sbjct: 271 QDITEQKEQEKKILHQAHFDSLTDLPNRFLALDRLNLLTKEARRTRKKLAVLFIDLDDFK 330

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
           ++ND  GH +GDK++   S +L  V  +   +GRLGG+EF        E  +   +A  L
Sbjct: 331 KVNDTLGHALGDKLLIQASQRLKSVIRSSDTIGRLGGDEFIVIINNLDEALDVRPIAEKL 390

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
                +  +       + +T S GI+      E  + ++  AD A+Y +K  GRN    F
Sbjct: 391 LDNFRD--VFKVESRELLLTTSIGISIYPDDGEEPNVLLRNADSAMYHSKNQGRNAYHFF 448

Query: 259 SDIEN 263
           ++  N
Sbjct: 449 TEDMN 453


>gi|150015543|ref|YP_001307797.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052]
 gi|149902008|gb|ABR32841.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052]
          Length = 1784

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 92/177 (51%), Gaps = 12/177 (6%)

Query: 93   LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
            L   YN ++  S +D L+G+ N   F  +L        +   + +++ FDID FK +ND 
Sbjct: 1437 LLEKYN-LTISSTLDKLTGVYNRKYFEEALLFLLDSAKARESEFAVMMFDIDDFKGVNDK 1495

Query: 146  FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            +GH  GD+V+  ++D++         +GR GGEEF       + + A  L   +RK IE 
Sbjct: 1496 YGHQTGDEVLVKVADEVKKCMSKGDIIGRYGGEEFIILLPNVNCEAAINLGERIRKNIEE 1555

Query: 206  SQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            ++I    G    +T+S GIA   ++      II RADQALY AK+ G+NR + + + 
Sbjct: 1556 ARI---LGDKRKVTVSIGIAMSSYESLNNEEIIRRADQALYKAKRDGKNRCIVWENE 1609


>gi|300936368|ref|ZP_07151296.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
 gi|300458474|gb|EFK21967.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
          Length = 371

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|254560809|ref|YP_003067904.1| sensor histidine kinase, diguanylate cyclase [Methylobacterium
           extorquens DM4]
 gi|254268087|emb|CAX23961.1| putative sensor histidine kinase, putative diguanylate cyclase
           (GGDEF) domain [Methylobacterium extorquens DM4]
          Length = 574

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 12/169 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
             ++   +  D L+GL N      SL  Y         K+S++  D+D+FK++ND  GH 
Sbjct: 384 REKLRNQALRDPLTGLYNRRYMEDSLERYVRLAEREGRKVSVIMIDLDHFKRLNDEHGHA 443

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+   +  +V          R GGEE          ++AA  A  +R  IE+    
Sbjct: 444 TGDAVLCEAAAAIVGALRETDVACRYGGEEMIVFLPDCDLEDAAAKAEQIRGRIES---- 499

Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           +S      ++ S G+A         + +I  AD ALY AK +GRN+V  
Sbjct: 500 LSGTHGAKVSASLGVASVPSTSGTSAELIRAADTALYRAKHNGRNQVAV 548


>gi|196038823|ref|ZP_03106131.1| putative sensory box/GGDEF family protein [Bacillus cereus
           NVH0597-99]
 gi|196045818|ref|ZP_03113047.1| putative sensory box/GGDEF family protein [Bacillus cereus 03BB108]
 gi|196023258|gb|EDX61936.1| putative sensory box/GGDEF family protein [Bacillus cereus 03BB108]
 gi|196030546|gb|EDX69145.1| putative sensory box/GGDEF family protein [Bacillus cereus
           NVH0597-99]
          Length = 430

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          NE ++++ FDID FK +
Sbjct: 254 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAV 313

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 314 NDTYGHDFGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 373

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q +  S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 374 IETKQFSGIS----KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCIY 425


>gi|85714378|ref|ZP_01045366.1| diguanylate cyclase/phophodiesterase [Nitrobacter sp. Nb-311A]
 gi|85698825|gb|EAQ36694.1| diguanylate cyclase/phophodiesterase [Nitrobacter sp. Nb-311A]
          Length = 761

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 84/185 (45%), Gaps = 10/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
            + E   +  RIS L+R D L+ L N  +F   +    E         +++F D+D FKQ
Sbjct: 309 DITERRKAEARISHLARFDSLTDLPNRLSFRDEIERLLESPTDRSRLSALLFIDLDQFKQ 368

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           IND  GHP GD+++  ++D+L  +     FV R GG+EF        S +EAA L+  + 
Sbjct: 369 INDTLGHPCGDRLLCIVADRLRGMLRPEDFVARFGGDEFVVFQQNIQSPEEAAALSRRIV 428

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + +  ++        + I  S GIA          ++  AD ALY AK  GR     F  
Sbjct: 429 ERL--TERYEVDRHLVEIGASIGIALTSPGATADNLLKHADMALYRAKADGRGTFCFFRS 486

Query: 261 IENNT 265
               T
Sbjct: 487 EMAET 491


>gi|291286671|ref|YP_003503487.1| diguanylate cyclase with PAS/PAC sensor [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290883831|gb|ADD67531.1| diguanylate cyclase with PAS/PAC sensor [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 626

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 63/166 (37%), Positives = 86/166 (51%), Gaps = 11/166 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
            RI +LS  D L+ L N       L         +N     V  DID+FK +ND  GH  
Sbjct: 462 KRIEELSVTDRLTSLYNRHKLDDVLQSEYSRHQRHNTDFCAVLIDIDHFKNVNDTHGHQT 521

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDKV+  L++ L        ++GR GGEEF   A+ S+ +  A LA  LR+++E +   I
Sbjct: 522 GDKVLVKLAELLKANTRESDYIGRWGGEEFLIIAVESNLEGTAFLAEKLRRMVEETDFPI 581

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                  ITIS G A+    E I+  I RAD ALY AK++GRN++V
Sbjct: 582 VG----KITISLGAAQYKTGETIAHFINRADDALYTAKQTGRNKLV 623


>gi|117924311|ref|YP_864928.1| diguanylate cyclase/phosphodiesterase [Magnetococcus sp. MC-1]
 gi|117608067|gb|ABK43522.1| diguanylate cyclase/phosphodiesterase [Magnetococcus sp. MC-1]
          Length = 555

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             + E      RI   +  D L+GL N   F+  L          + +++++F D+D FK
Sbjct: 112 RDISEKKRQEERIRHQANYDALTGLPNRGLFLDRLKLELARAKRTDVRVAVMFIDLDRFK 171

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            +ND  GH  GD ++   S +L+        V R+GG+EF       +    A  +A  +
Sbjct: 172 WVNDTLGHAAGDDLLREASKRLLSCHRQSDTVARMGGDEFTVILPDMARGPHAERVAAQI 231

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + +         G  + I+ S G+       + +  ++  AD A+Y AK  GRN    +
Sbjct: 232 LEQLAA--PFTLEGQEVTISGSVGVTIFPDDADNLDDLLKNADTAMYRAKSQGRNAYRFY 289

Query: 259 SDIENNTC 266
           +   +   
Sbjct: 290 TPDMHAEA 297


>gi|297538683|ref|YP_003674452.1| PAS/PAC and Chase sensor-containing diguanylate
            cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297258030|gb|ADI29875.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Methylotenera sp. 301]
          Length = 1591

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 17/217 (7%)

Query: 64   ILVENLSLVIISITISLLLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
            +  ++L++  +     ++  Y++  + +     +   I+ L+  D L+ L N    I  L
Sbjct: 1121 VYPQHLTITAVMGDNGIVTNYVATFTDVTLRNAAEAEINHLAFYDVLTRLPNRRLLIDRL 1180

Query: 123  -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                          +++F D+D+FK +ND  GH VGD ++  ++D+L         V RL
Sbjct: 1181 NHALSAGARLGWGGALLFLDLDHFKTLNDTLGHDVGDLLLRQVADRLTDCVREGDTVARL 1240

Query: 176  GGEEFAAAALGSSEQ------EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
            GG+EF       S+       +A  +AN +  +I  SQ       +   T S G+     
Sbjct: 1241 GGDEFVVMLEDLSKHPLEAAGQAETIANKI--LISISQPYQLGASAYQTTASIGVVLFSE 1298

Query: 230  KE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             E     ++  AD A+Y AKK GRN +  F       
Sbjct: 1299 NEHSQDVLLKHADIAMYQAKKMGRNTLCFFDPNMQEA 1335


>gi|291613404|ref|YP_003523561.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291583516|gb|ADE11174.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 830

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
              + E   S   I Q +  D L+GL N   F   L             L+++F D+D F
Sbjct: 383 SQDITEKKRSEETIWQQANFDPLTGLPNRRMFQDRLEHEIKKSNREGLPLALMFIDLDKF 442

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND  GH  GD ++   + ++         V RLGG+EF      S   +A  +    
Sbjct: 443 KEVNDTLGHDKGDILLVEAAQRISGCVRESDTVARLGGDEFTVIL--SELDDANSIERIA 500

Query: 200 RKIIENSQINISSGPSI-HITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           + II+           +  ++ S GI    +  P +  ++  ADQA+Y +K +GRNR   
Sbjct: 501 QAIIQALVAPFLLAEEVAFVSASIGITLYPNDAPNLELLMSNADQAMYASKSAGRNRFSY 560

Query: 258 FSDIENNTC 266
           F+       
Sbjct: 561 FTPSMQAAA 569


>gi|189404017|ref|ZP_02786585.2| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4501]
 gi|189405928|ref|ZP_02825262.2| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC508]
 gi|189368093|gb|EDU86509.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC4501]
 gi|189377384|gb|EDU95800.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str.
           EC508]
 gi|326346083|gb|EGD69822.1| Protein YaiC [Escherichia coli O157:H7 str. 1125]
          Length = 366

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 137 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAE 196

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 197 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 256

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +   ++
Sbjct: 257 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL 316

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P +++ IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 317 P--NTPQVNLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 364


>gi|119944868|ref|YP_942548.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Psychromonas ingrahamii 37]
 gi|119863472|gb|ABM02949.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Psychromonas ingrahamii 37]
          Length = 954

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 93/216 (43%), Gaps = 13/216 (6%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +   Y  + +  L I   +   +    S S + +   + +++   +  D L+GL N S F
Sbjct: 471 HDGRYRWILSRGLAIWDSSGEAIRMAASHSDISDQRDAKDKLRYDAFHDSLTGLYNRSWF 530

Query: 119 ISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           +S L           N   +++F D+D FK +ND  GH  GDK++ +++++L        
Sbjct: 531 VSYLQELLSGHSRNKNLNFAVLFLDLDQFKLVNDTLGHAAGDKLLIYVAERLKKCLRETD 590

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCH 229
            + R GG+EF              +A  +   IE   ++ S   + IH   S GI     
Sbjct: 591 MLARFGGDEFVILLKSDENYRFIQIAERI---IEQLSLSFSINNNYIHTGASIGITLLET 647

Query: 230 K-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             +    ++  AD A+Y AK +G+N  + F +   +
Sbjct: 648 GYQDAYEMLRDADIAMYRAKLNGKNCHIVFDEEMRS 683


>gi|16329416|ref|NP_440144.1| PleD gene product [Synechocystis sp. PCC 6803]
 gi|1651898|dbj|BAA16824.1| PleD gene product [Synechocystis sp. PCC 6803]
          Length = 585

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 109/240 (45%), Gaps = 19/240 (7%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS------GSILKELF 94
           ++IF+  +F   I +T  +    I  + ++   +S  +  L   +        +  K L 
Sbjct: 346 SIIFL-QLFTAVISMTALFFSAIIQEKKIAQQSLSRAVKNLENEVQKRTDKLAAANKSLE 404

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFG 147
           ++   +++L+ ID L+ + N   F        +        L+++  D+D+FK  ND++G
Sbjct: 405 LANIELNKLAHIDGLTRIPNRRYFEQQFAEEWQIFLGRGKSLTVMMVDVDHFKLYNDHYG 464

Query: 148 HPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           H  GD  +A ++  L      P   FV R GGEEF        +  A  +A  ++  ++ 
Sbjct: 465 HSQGDICLAEIAQILQCCIRQPGSDFVARYGGEEFVLVLPEVDQFGAIAIAQRIKTALQT 524

Query: 206 SQI-NISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             I + +   + ++T S GIA           T++ +ADQALY AK++GRN+   F   E
Sbjct: 525 RNISHHAVDLAGNVTCSIGIAVAHSRFASSKETLLKQADQALYCAKQAGRNQYFLFDHAE 584


>gi|190892031|ref|YP_001978573.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190697310|gb|ACE91395.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 417

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/189 (32%), Positives = 91/189 (48%), Gaps = 12/189 (6%)

Query: 89  ILKELFIS-YNRISQL--SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           IL+EL  +  +RI  +  +  D L+  +   AF             +  +LS + FDID+
Sbjct: 154 ILEELAAAAMDRIDLMQSAATDSLTEAMTRRAFKQEADQLISLALRHQHELSCIVFDIDH 213

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND +GH  GD V+  ++             GR+GGEEFA        Q A  +A  
Sbjct: 214 FKQVNDRYGHAAGDAVLKAVASVCKATLRAGDLFGRIGGEEFAVVLPHVDRQGALAVAEK 273

Query: 199 LRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           LR  I    I+   G ++H+T S G  A     + I T++ +AD A+Y AK  GRNR V 
Sbjct: 274 LRAAIAFQPIHGDHG-NLHVTASLGSSALSIVSKDIETLLAQADAAMYQAKHGGRNRCVS 332

Query: 258 FSDIENNTC 266
           +S I  +  
Sbjct: 333 WSSIHADHA 341


>gi|70732377|ref|YP_262133.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5]
 gi|68346676|gb|AAY94282.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5]
          Length = 507

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 91/193 (47%), Gaps = 15/193 (7%)

Query: 77  TISLLLGYISGSILKELFI---SYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYN 126
            + + L +++  + +EL     +   +++L+ +D L+GL N                  N
Sbjct: 305 ALCIALFWLTWQLCRELRRRQSAEQELARLAAVDALTGLANRRTLDQVLGNEWSRARRAN 364

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAAL 185
             LS++  D+D+FK  ND FGHP+GD+ +  ++  +            R GGEEFA    
Sbjct: 365 LPLSLLMVDVDHFKSFNDRFGHPLGDQALRAVAQSIGACVGRPSDLAARYGGEEFAVILP 424

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQA 243
           G+    AA+LA  +R  I    +   S  +  +T+S GI        I     +  AD+A
Sbjct: 425 GTDSAGAAVLAEKIRTSIAA--LPAISEHAAPLTVSIGINTWSGNADIGLEQWVSDADKA 482

Query: 244 LYVAKKSGRNRVV 256
           LY AK SGRNRVV
Sbjct: 483 LYQAKYSGRNRVV 495


>gi|71907538|ref|YP_285125.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71847159|gb|AAZ46655.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 832

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 73/194 (37%), Gaps = 17/194 (8%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
              + +   +   I +L+  D L+ L N       L              +++  D+D F
Sbjct: 367 NQDITDRKRNEEEIHRLAFYDSLTHLPNRRLMFDRLEHALIGSARRKSHGALLLIDLDNF 426

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-----EAAI 194
           K +ND  GH VGD+++  ++ +L           RLGG+EF               +A +
Sbjct: 427 KFLNDTHGHEVGDELLLEVAKRLKTCIRQGDTAARLGGDEFVVILEDIDGAGNGTIQAEL 486

Query: 195 LANDLRKIIENS----QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKK 249
           +A  ++  + +     +             S GIA           ++ RAD A+Y AK 
Sbjct: 487 IAGHIQAQLNHPFSLVRPPERLSIDYRCASSIGIALFDDTMVTAKELLRRADTAMYQAKA 546

Query: 250 SGRNRVVCFSDIEN 263
           +GRN +  F     
Sbjct: 547 AGRNTLRFFDPEMQ 560


>gi|332307136|ref|YP_004434987.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174465|gb|AEE23719.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 350

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 64/198 (32%), Positives = 98/198 (49%), Gaps = 14/198 (7%)

Query: 69  LSLVIISITISLLLGY---ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS- 124
           L+++ +SI   LL  +      S    L I    I QL+  D L+GL N     ++L + 
Sbjct: 157 LNVIEVSIAHILLFRFYEQARSSAYDTLAIRNAEILQLAETDKLTGLYNREKLENTLIAL 216

Query: 125 -----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                    LS++  D+DYFK+IND +GH  GDKV+  L+ +L  +      V R GGEE
Sbjct: 217 LPGVDEQYPLSVMLLDVDYFKKINDQYGHFEGDKVLQALAKKLKDLMREEDIVARWGGEE 276

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F      +S + A  LA  +R+ I    I         +T+S G+A+    + + +++ R
Sbjct: 277 FVVLCTNASLETAMQLAQRIREDIAKQVI-----CGHGLTVSVGVAQYVPGDSVESLLDR 331

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD  LY AK +GRN V+ 
Sbjct: 332 ADVGLYQAKNNGRNSVIA 349


>gi|324006150|gb|EGB75369.1| diguanylate cyclase domain protein [Escherichia coli MS 57-2]
          Length = 430

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 80/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 258 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++ISS P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 --VSVAKVSISSLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|307154420|ref|YP_003889804.1| PAS/PAC sensors-containing diguanylate cyclase [Cyanothece sp. PCC
           7822]
 gi|306984648|gb|ADN16529.1| diguanylate cyclase with PAS/PAC sensor [Cyanothece sp. PCC 7822]
          Length = 882

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 11/177 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
           L  +   +  L RID L+ + N   F               + LS++  D+DYFK+ ND 
Sbjct: 706 LLEANRELEHLIRIDPLTQVPNRRYFDEYFQQEWQRGIREEQPLSLILLDVDYFKRYNDY 765

Query: 146 FGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GHP GD+ +A ++  +          V R GGEEFA     ++ +   I+A  ++  ++
Sbjct: 766 YGHPAGDRCLAAVAQAVKQSLKRPADQVARYGGEEFAVILPHTALEGGMIMAKQIQDSLQ 825

Query: 205 NSQINISSGP-SIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCF 258
              +     P S  +T+S GI+            +I +ADQALY AK+ GRNR   +
Sbjct: 826 QFSLPHKRSPISNCVTVSLGISCIIPSSFMSSERLIIQADQALYQAKQQGRNRYAIY 882


>gi|258405563|ref|YP_003198305.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
 gi|257797790|gb|ACV68727.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
          Length = 315

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 11/179 (6%)

Query: 89  ILKELFISYN-RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + +E       ++ +++R+D L+GL N    + SL       G    ++++   D+D+FK
Sbjct: 135 LARERMEEARCQLEEMTRLDPLTGLANRRHLMESLSRELSRCGRSGSQVTVAILDLDHFK 194

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GH  GD+V+   + +L  +      VGR GGEEF      +S +    +   LR
Sbjct: 195 VVNDTYGHLCGDQVLIHTAKRLESMLRQYDLVGRYGGEEFCVILPETSLKSGFEIVERLR 254

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
           K +  + +       I +T+SAG A     E      ++  ADQ LY AK +GR+ V C
Sbjct: 255 KAVAATPVPYED-LEIPLTVSAGCACTEDMECLSTDALLLSADQYLYKAKDAGRDCVQC 312


>gi|221126755|ref|XP_002164849.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 478

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 91/200 (45%), Gaps = 11/200 (5%)

Query: 75  SITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------N 126
           S T   ++ YI  SI + +      RI  L++ D L+ L N +     LG          
Sbjct: 8   SATSGEVVNYIGISIDITDRKAKEERIRFLAQHDVLTELPNRALCQQRLGEAIASARHTG 67

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           EK++++F D+D FK IND  GH +GD ++  ++ +L     +   V RLGG+EF      
Sbjct: 68  EKVAVLFIDLDRFKLINDTLGHHIGDGLLRTVARRLSSAVRSDDTVSRLGGDEFVIILRH 127

Query: 187 -SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQAL 244
            +   E   + ND R I    Q     G  + ++ S G+A           ++ RAD A+
Sbjct: 128 VTDLPELTAMVND-RLIPTIRQTATVDGHVLTVSCSVGVALYPEDATDQDELMRRADAAM 186

Query: 245 YVAKKSGRNRVVCFSDIENN 264
           Y AK +GR+    FS   + 
Sbjct: 187 YEAKSAGRDTARFFSPETDQ 206


>gi|124514195|gb|EAY55710.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptospirillum rubarum]
          Length = 831

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 11/179 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           L +       + + +  D L+ L N           I      N  ++++F D+D FK++
Sbjct: 262 LSDRKQEEEELRKKAYFDPLTHLANRHLMEGELSRSIEVARRNNMSMAVLFLDLDGFKEV 321

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRK 201
           NDN GH  GDK++  ++ +L  +      V RLGG+EF        +  E    A  +  
Sbjct: 322 NDNHGHEFGDKLLVHVAGRLEKLIRHGDLVARLGGDEFVVILNNIRNPAEVRAAAGRILA 381

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            I+     +  G ++ I  S GI+   +++   S+++  ADQA+Y+AK  G+N  V ++
Sbjct: 382 GIQA--PYLIDGQTMIIGTSIGISVYPNEDKDPSSLLREADQAMYLAKNRGKNNFVLYT 438


>gi|120611510|ref|YP_971188.1| PAS/PAC and Chase sensor-containing diguanylate
           cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1]
 gi|120589974|gb|ABM33414.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Acidovorax citrulli AAC00-1]
          Length = 1043

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 12/194 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
            I+   L +   +   I  L+  D L+ L N    +  L              +++  D+
Sbjct: 578 LITMVDLSQHKAAEEEIHYLAYYDPLTQLPNRRLLVDRLQQALAASVRRGRCGAVLMLDL 637

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAI 194
           D FK +N+  GH  GD ++  ++ +L         V R GG+EF      LG S Q AA 
Sbjct: 638 DNFKTLNETQGHERGDMLLRQVAQRLRGCVQNEDTVARHGGDEFVVVLEDLGQSPQGAAA 697

Query: 195 LANDL-RKIIENSQINIS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSG 251
            A D+ +KI+   +   +  G   H T+S G+       E +  ++ R D A+Y AK SG
Sbjct: 698 RAEDMGQKILAAMRHPFTLEGEPHHTTLSMGVTVFQGARETVDELLQRTDLAMYQAKASG 757

Query: 252 RNRVVCFSDIENNT 265
           RN +  +      +
Sbjct: 758 RNALRFYDPQMQAS 771


>gi|323162446|gb|EFZ48298.1| hypothetical protein ECE128010_1347 [Escherichia coli E128010]
          Length = 430

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 258 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|309388336|gb|ADO76216.1| response regulator receiver modulated diguanylate cyclase
           [Halanaerobium praevalens DSM 2228]
          Length = 333

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 99/186 (53%), Gaps = 14/186 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           ++ ++L     ++ +++ +D L+G+ N   F  +L    ++       L+++  DID+FK
Sbjct: 146 ALSEKLKNVNKKLEKMALVDGLTGISNRRLFDKTLKKELKRARRKETELALIMLDIDHFK 205

Query: 141 QINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           Q ND +GH  GD+ +  ++  L         F  R GGEEFA     +++  A  +A D+
Sbjct: 206 QYNDTYGHQEGDECLKEIASVLEANSKRASDFAARYGGEEFAVILPDTAKGGALKIAEDI 265

Query: 200 RKIIENSQINISSGP-SIHITISAGIAERCHKEPIST-IIY----RADQALYVAKKSGRN 253
           RK I   ++   + P + ++T+S G++    K  +S  +I     +ADQALY AK++GRN
Sbjct: 266 RKDIMALKLEHKNSPIAEYVTVSLGVSSLQVKTEVSQKLIKSFIDKADQALYQAKETGRN 325

Query: 254 RVVCFS 259
           + V + 
Sbjct: 326 KTVYYD 331


>gi|308051313|ref|YP_003914879.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Ferrimonas
           balearica DSM 9799]
 gi|307633503|gb|ADN77805.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Ferrimonas
           balearica DSM 9799]
          Length = 867

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 83/191 (43%), Gaps = 13/191 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDY 138
              +++   + NR+   +  D L+GL N +  ++ L           NE+ +++F D+D 
Sbjct: 424 QRQIQQRRKAENRLRHDALHDALTGLPNRALLLNRLDQALKHIKRHANERFALLFIDLDR 483

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAN 197
           FK +ND+ GH  GD ++  ++ +L         + RLGG+EF        + Q    ++ 
Sbjct: 484 FKLVNDSLGHLAGDLLLETIARRLGECIRDNDTLARLGGDEFVILLDSIRNRQHVEEVSE 543

Query: 198 DLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + + +   Q     G       S GI  A+  H     +++  AD ALY AK +GR  +
Sbjct: 544 RILERVR--QPLQLEGKEFFPGASIGIALADPHHNASPQSLLRDADAALYHAKSAGRGGL 601

Query: 256 VCFSDIENNTC 266
             F    +   
Sbjct: 602 QFFDRKMHAEA 612


>gi|289651656|ref|ZP_06482999.1| GGDEF [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 358

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 10/225 (4%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
              + +    L P   L   + +  + + + +   + +G++S  +  +L+   N + ++S
Sbjct: 125 ALGVLISLALLNPAVNLHGNMAQIYACLPVLVIYPIFIGWMSHQVTLKLWEHRNILRKIS 184

Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           R D L+GLLNH A+   L        + +++  I   DID+FK IND +GH +GD V+  
Sbjct: 185 RTDSLTGLLNHGAWKDLLDLEYVKSQNQHQQCVIALIDIDHFKVINDTYGHLMGDTVLQN 244

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +S+ L+        +GR GG+EF      +   +A  +    R  I+    ++     + 
Sbjct: 245 ISEALMENLRDSDLIGRCGGDEFCVILPDTRLFQAREILERTRLAIDEMSYSLQ--RDLK 302

Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +++S GIA    +    S+ ++ AD+ALY+AK +GRN V    D+
Sbjct: 303 VSLSIGIAAYSPELPDASSWLHEADKALYLAKSTGRNCVASAQDM 347


>gi|281178532|dbj|BAI54862.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 430

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 258 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|289829477|ref|ZP_06547089.1| hypothetical protein Salmonellentericaenterica_23168 [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
          Length = 567

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 100/203 (49%), Gaps = 11/203 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+    T  LL+ + +   ++K +F+  N     +  D L+ L N  A          
Sbjct: 359 LTLLWGLFTAMLLISWGVIRHMVKNMFVLQNSPQWQAWHDPLTRLYNRGALFEKASRLAK 418

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 +  S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 419 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 478

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 479 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 538

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
            AD+ LY AK+SGRNR+ C SD 
Sbjct: 539 LADKRLYYAKQSGRNRI-CASDA 560


>gi|170722393|ref|YP_001750081.1| diguanylate cyclase [Pseudomonas putida W619]
 gi|169760396|gb|ACA73712.1| diguanylate cyclase [Pseudomonas putida W619]
          Length = 469

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 112/251 (44%), Gaps = 18/251 (7%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIAN----IFLFYIGLTPFYGLEYIL-VENLSLVIISITI 78
           P   +++ +  +S F+ +++ +      I      L  F   +  L V  L    + I +
Sbjct: 212 PIAALLWCAWTYSPFLVSLLTLIAGSTLIVAVAQNLMHFSVPQSELGVTTLMSARMGIAM 271

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---------KL 129
            +L   +   + +       R++  + ID L+G L  SAF     +  +          L
Sbjct: 272 LILGPLVVACVSQANRSLLARLAHQATIDHLTGALTRSAFTRRANALLDSRQKHAQALPL 331

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID+FK IND  GH VGD+V+   +  L         + R+GGEEF     G + 
Sbjct: 332 TLMMLDIDHFKSINDRHGHGVGDQVLRQFARTLQDQLHGGELLARMGGEEFVVLLPGLAP 391

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI---AERCHKEPISTIIYRADQALYV 246
           + A+  A  LR+ +++  +    G    IT+S G+   A       +  ++ RADQALY 
Sbjct: 392 ERASFTAERLRRAVQDLHLAKGDGRP-QITVSIGLDGCAGHEPAPTLDELLARADQALYR 450

Query: 247 AKKSGRNRVVC 257
           AK  GRNRV  
Sbjct: 451 AKAHGRNRVEV 461


>gi|320156316|ref|YP_004188695.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           vulnificus MO6-24/O]
 gi|319931628|gb|ADV86492.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           vulnificus MO6-24/O]
          Length = 320

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 89/178 (50%), Gaps = 9/178 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQIN 143
             L  + + +S++SR D L+GL N + +  SL     ++       S+V FDID+FK++N
Sbjct: 144 THLKETNHHLSEISRRDGLTGLFNRAFWEQSLKEEFSRMQFLDTPSSLVIFDIDHFKKVN 203

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD+VI   +  L          GR GGEEF      +S  +A   +  LRK I
Sbjct: 204 DTYGHHAGDEVIRRTASLLKKTARNSDLCGRFGGEEFTVLLPHTSADQARYFSERLRKRI 263

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           E  +I      +I+ TIS G+ E   K    +  +  AD ALY +K+ GRN+     +
Sbjct: 264 EQ-EIVCVEKFAINYTISLGVCEFDAKFTSHTEWLKAADSALYHSKEGGRNQTTVHEE 320


>gi|302383482|ref|YP_003819305.1| response regulator receiver modulated diguanylate cyclase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302194110|gb|ADL01682.1| response regulator receiver modulated diguanylate cyclase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 454

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 87/165 (52%), Gaps = 9/165 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N       L ++        E +S++  DID+FK++ND FGH  GD+V
Sbjct: 287 EMAVTDALTGLHNRRYMAGQLQAFVGRAALGGEPVSVLVLDIDHFKKVNDGFGHDAGDEV 346

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   + +L           RLGGEEF     G++ ++A  +A  +R+ + ++   +  G 
Sbjct: 347 LREFAVRLATNVRAVDLPCRLGGEEFVVVMPGTTIEDAHRIAERIRRDVGSTPFRVMGGR 406

Query: 215 S-IHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             + +TIS G+A      +    ++ RAD+ +Y AK SGR++V+ 
Sbjct: 407 EHLTVTISIGVAASTGPGDTPDALLKRADEGVYEAKASGRDKVIA 451


>gi|325982814|ref|YP_004295216.1| diguanylate cyclase [Nitrosomonas sp. AL212]
 gi|325532333|gb|ADZ27054.1| diguanylate cyclase [Nitrosomonas sp. AL212]
          Length = 558

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 9/173 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           +    + +  LS  D L+GL N +         ++         +++  D+D+FK  NDN
Sbjct: 375 MQKKNHLLETLSVTDSLTGLYNRNKLNVIISDQLARYERNKRPFAVLMIDVDHFKTFNDN 434

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD+VIA ++ ++        F  R GG+EF      ++  EA   A  +R  + N
Sbjct: 435 LGHVAGDEVIAAVAKKISQSIRNVDFAARYGGDEFIIILTETAVNEAMKTAERIRAQVAN 494

Query: 206 SQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
              + S   ++ +T+S GI +   ++  ++T++ R D ALY AK+SGRN+V C
Sbjct: 495 VHCS-SLNKTLRVTLSIGIIQSEPEDISLTTLLARVDSALYQAKRSGRNQVHC 546


>gi|218689330|ref|YP_002397542.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein
           [Escherichia coli ED1a]
 gi|218426894|emb|CAR07749.2| putative diguanylate cyclase, GG[D/E]EF domain signalling protein
           [Escherichia coli ED1a]
          Length = 410

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 80/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 238 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 296

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 297 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 356

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++ISS P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 357 --VSVAKVSISSLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 407


>gi|49480448|ref|YP_039404.1| hypothetical protein BT9727_5094 [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49332004|gb|AAT62650.1| conserved hypothetical protein, GGDEF domain in C-terminal region
           [Bacillus thuringiensis serovar konkukian str. 97-27]
          Length = 351

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 12/227 (5%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           S+F   + F  N++  +I   P   L   +   ++L ++  +++  + +IS + + +   
Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLSMLFKDM-SIVALYLVCSSVAAYITFISANYVLQSNE 182

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
            + ++ Q + ID L+GL N   F   +  +       N+ L ++  DID+FK +ND +GH
Sbjct: 183 LFQKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNDSLCLLLIDIDHFKSVNDTYGH 242

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           P GD+V+  +   L  V   P    R GGEEFA             +   +R  +E    
Sbjct: 243 PAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAAVEKHSF 302

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  G  I IT+S GI+    ++     I  AD ALY +K++GRN+V
Sbjct: 303 QLLDGTKIKITVSVGISVY--EQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|78048604|ref|YP_364779.1| putative signal transduction protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037034|emb|CAJ24765.1| putative signal transduction protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 494

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 92/198 (46%), Gaps = 14/198 (7%)

Query: 71  LVIISITISLLLG--YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE- 127
           +V+ ++  +LLLG        L+ +  +  ++S  + +D L+G+ N  AF   L    + 
Sbjct: 294 IVVAALGCTLLLGVGIWLDLQLRRMHRNEAKLSTEAWVDALTGIANRRAFDHRLSRALQD 353

Query: 128 ------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEF 180
                  LS++  D+D+FK  ND +GH  GD  +  ++  +            R GGEEF
Sbjct: 354 AVRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCSRRSEDLAARYGGEEF 413

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKE---PISTI 236
                 +    A  LA+ +R  +    +   S P S H+T+S G A     E     + I
Sbjct: 414 GMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGAATFEPGEAPLSPNAI 473

Query: 237 IYRADQALYVAKKSGRNR 254
           ++ AD ALY AK+ GRNR
Sbjct: 474 VHDADSALYRAKQKGRNR 491


>gi|115526694|ref|YP_783605.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
 gi|115520641|gb|ABJ08625.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
          Length = 780

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 12/187 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---------YNEKLSIVFFDIDYF 139
            + E   +  RI  L+R D L+ L N   F   +             +  +++F D+D F
Sbjct: 324 DITERRSTEARIIHLARYDELTALPNRVNFRDEIERLLTIAQNRGETQPAALLFIDLDQF 383

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           KQ+ND  GHP GD+++  ++++L  +     ++ R GG+EF        S+++AA+LA  
Sbjct: 384 KQVNDTLGHPCGDRLLCDVANRLREMLRPEDYIARFGGDEFVVFQQHLKSDEDAAVLARR 443

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   +  S+  +     + I  S GIA          ++  AD ALY AK  GR     F
Sbjct: 444 IVDRL--SERYVIDHHVVEIGASIGIAMTAPGIKADVLLKNADMALYRAKADGRGTYCFF 501

Query: 259 SDIENNT 265
            D    T
Sbjct: 502 RDEMAQT 508


>gi|94314669|ref|YP_587878.1| hypothetical protein Rmet_5750 [Cupriavidus metallidurans CH34]
 gi|93358521|gb|ABF12609.1| hypothetical protein; GGDEF and EAL domains [Cupriavidus
           metallidurans CH34]
          Length = 581

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 97/207 (46%), Gaps = 18/207 (8%)

Query: 72  VIISITISLLLGYISGSILKELFISYNR-------ISQLSRIDCLSGLLNHSAFISS--- 121
           ++++    +L G+++G + +E   +  +       IS +++ D L+GL N S        
Sbjct: 106 LLLATAAVMLAGWLAGRLRRERQEARKQATLADAYISHMAKHDALTGLPNRSELHERCEV 165

Query: 122 ----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                      ++++  D+D+FK IN+  GHPVGD ++  ++D++         V R+GG
Sbjct: 166 LLAEARRRGSGVALLLLDLDHFKHINETLGHPVGDDLLRTIADRIRGAVRPRDVVARMGG 225

Query: 178 EEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPIST 235
           +EFA A        EA ++A  +   +        +G  + +T S G+A        ++ 
Sbjct: 226 DEFAVALGDLRFDGEAELVAAKILARVSEDLP--LAGEHVRVTPSLGMAIFPQDGNSLTD 283

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDIE 262
           ++  AD A+Y AK  GR ++  F+   
Sbjct: 284 LMKSADAAMYAAKHGGRAQLRRFASEM 310


>gi|325915850|ref|ZP_08178149.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325537971|gb|EGD09668.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 573

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 76/170 (44%), Gaps = 8/170 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNF 146
                 + + S  D L+GL N      SL             LS++  D+D+FKQ ND+ 
Sbjct: 389 LRLRESLRRQSIRDALTGLYNRRYLEESLSHELARCARRGLPLSVLMLDVDHFKQFNDSQ 448

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD ++A + + L+          R GGEEF      +   EA  LA  +R  I   
Sbjct: 449 GHAGGDLLLAAVGELLLTRLRAEDVACRYGGEEFTVILPEADGDEAMRLAEQIRSHIAAL 508

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
            ++        +T S G+A      E  +++I +AD ALY AK  GRNRV
Sbjct: 509 AVSDGQRALPRVTASIGVASYPADGELGASLIQKADAALYAAKHRGRNRV 558


>gi|312971539|ref|ZP_07785714.1| uncharacterized protein ydaM [Escherichia coli 1827-70]
 gi|310336136|gb|EFQ01336.1| uncharacterized protein ydaM [Escherichia coli 1827-70]
          Length = 430

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 258 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|307721441|ref|YP_003892581.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
 gi|306979534|gb|ADN09569.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
          Length = 615

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 8/179 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           E  I  +++   S  D ++GL N                  N   S++  D+D+FK++ND
Sbjct: 430 ESKILMSKLRDTSLRDAMTGLYNRRFLEEFIDTFASQAKRENTTYSVMMLDVDFFKKVND 489

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH +GDKVIA + + L           R GGEEF      ++++    +A+ +     
Sbjct: 490 TYGHDIGDKVIAKIGEVLHNSIRESDLAIRYGGEEFVVLLHNATDEGTQKIASKIHSEFA 549

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
               ++ +G +I  T+S GIA+     + I   I  AD ALYVAK +GRN++V ++   
Sbjct: 550 KLTFDVGNGKTIQKTMSIGIAKFPRDGDSIWKCIKYADTALYVAKTTGRNKIVEYTPEM 608


>gi|189022437|ref|YP_001932178.1| GAF/GGDEF domain protein [Brucella abortus S19]
 gi|237816736|ref|ZP_04595728.1| diguanylate cyclase (GGDEF) domain-containing protein [Brucella
           abortus str. 2308 A]
 gi|254698457|ref|ZP_05160285.1| GAF/GGDEF domain protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|260544413|ref|ZP_05820234.1| GAF/GGDEF domain-containing protein [Brucella abortus NCTC 8038]
 gi|260759679|ref|ZP_05872027.1| predicted protein [Brucella abortus bv. 4 str. 292]
 gi|260762921|ref|ZP_05875253.1| predicted protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|261313663|ref|ZP_05952860.1| diguanylate cyclase yddV [Brucella pinnipedialis M163/99/10]
 gi|189021011|gb|ACD73732.1| GAF/GGDEF domain protein [Brucella abortus S19]
 gi|237787549|gb|EEP61765.1| diguanylate cyclase (GGDEF) domain-containing protein [Brucella
           abortus str. 2308 A]
 gi|260097684|gb|EEW81558.1| GAF/GGDEF domain-containing protein [Brucella abortus NCTC 8038]
 gi|260669997|gb|EEX56937.1| predicted protein [Brucella abortus bv. 4 str. 292]
 gi|260673342|gb|EEX60163.1| predicted protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|261302689|gb|EEY06186.1| diguanylate cyclase yddV [Brucella pinnipedialis M163/99/10]
          Length = 316

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS--- 130
           L++G I+     I  +   +  R++  +  D L+ L N       ++   S  + LS   
Sbjct: 122 LMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGKLLTQKKSARDGLSRDG 181

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSS 188
            ++  D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF      G+S
Sbjct: 182 FLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTS 241

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++  I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK
Sbjct: 242 KEQTDIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAK 300

Query: 249 KSGRNRVVCFSD 260
             G+NR   F +
Sbjct: 301 SKGKNRFEYFEE 312


>gi|157962568|ref|YP_001502602.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157847568|gb|ABV88067.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
          Length = 261

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 74/267 (27%), Positives = 120/267 (44%), Gaps = 22/267 (8%)

Query: 3   RSLKDFLSIWLCHE-KNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL 61
           RS + +L   + H  +NL        +   S+ FS+FI  + F              Y +
Sbjct: 6   RSARRYLVQRMRHIIQNLGRLKVVLLITALSVSFSVFITFLAFSLR------QTGAVYNI 59

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF--- 118
            + L        I +TI+ ++ +   S+L ++      +  L+ +D L+ LLN  AF   
Sbjct: 60  AFFLAT-----FIPLTIAPIVSWPLISLLMKVDSLEKEMRLLASLDPLTELLNRRAFFRD 114

Query: 119 ----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
               I         LS++  D+D FK IND +GH  GD V+   S  +     T   +GR
Sbjct: 115 AELYIHRAKQEGRMLSVIALDLDKFKAINDCYGHSAGDAVLRHFSTTIRANCRTSDLMGR 174

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEP 232
           LGGEEFA     +S   A  LA  L + +  + I      ++  T+S G+        + 
Sbjct: 175 LGGEEFALLLPNTSASAAYALAERLHQALRLTAIQYGHS-TMRYTVSIGVISVVPQKTDN 233

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFS 259
           I  ++ +AD++LY+AK++GRN  V F 
Sbjct: 234 IEALLNKADRSLYLAKETGRNCTVVFD 260


>gi|78222002|ref|YP_383749.1| diguanylate cyclase/phosphodiesterase [Geobacter metallireducens
           GS-15]
 gi|78193257|gb|ABB31024.1| diguanylate cyclase/phosphodiesterase [Geobacter metallireducens
           GS-15]
          Length = 736

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 83/185 (44%), Gaps = 11/185 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
            E   S  +I +L+  D L+ L N + F+  L          N K ++ F D+D FK IN
Sbjct: 289 TERKKSDEQIQRLAYYDTLTALPNRTLFLDRLEQALAGAIRDNGKFALFFIDLDGFKVIN 348

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKI 202
           DN GH  GD ++  +S +L         + RLGG+EF      + E+  AA LA  L + 
Sbjct: 349 DNLGHAQGDLLLTMVSQRLREGIRRKDTLARLGGDEFMVLISYAGEERNAAHLAQHLLER 408

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           I  S         ++ + S GI+          T++  AD A+Y AK++GRN     S  
Sbjct: 409 I--SPPYEIGSRVVYTSASIGISIFPDDGRDAETLLRCADMAMYAAKEAGRNGYHFHSPE 466

Query: 262 ENNTC 266
            N   
Sbjct: 467 MNRKA 471


>gi|330938481|gb|EGH42084.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 828

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 101/234 (43%), Gaps = 19/234 (8%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS-------LLLGYIS-GSILKELF 94
            F A ++        + G      +N  L    +TIS       LL  +++  + +  L 
Sbjct: 319 AFYAAMWHQLAAEGHWQGENSNRRKNGELYPSWLTISAVRNKDDLLTHFVAVFADISSLK 378

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147
            +  R+   +  D L+GL N   F S L +            +++F D+D FK IND+ G
Sbjct: 379 HAQARLDYQAHHDPLTGLPNRILFESRLQAALLHSEESGSLGAVLFLDLDRFKHINDSLG 438

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206
           HPV D ++  ++ +L         V RLGG+EF     G     +A  +AN L      +
Sbjct: 439 HPVCDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQASDAQAIANKLLACF--N 496

Query: 207 QINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               +    ++I+ S G          ++T+I  AD A+Y +K  GRNRV  ++
Sbjct: 497 TPFEAGEHELYISPSIGSCVFPTDGTDVATLIKNADAAMYRSKAKGRNRVESYT 550


>gi|320335019|ref|YP_004171730.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
 gi|319756308|gb|ADV68065.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
          Length = 359

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 58/250 (23%), Positives = 115/250 (46%), Gaps = 22/250 (8%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL 81
           + P  +++ F +F   +         +F   +G+   + +  ++ E      +++ + + 
Sbjct: 113 WLPLAYLVPFLVFRPAWALGSTL--TVFAALLGMGVAFWVSPVIPEATKTAHVALLVQMY 170

Query: 82  LGYIS--------GSILKELFISYNRISQ---LSRIDCLSGLLNHSAFISSLGSY----- 125
           L +++          +L+    +  +      L+ +D L+GL N    ++ LG +     
Sbjct: 171 LTHVTFLSFLALHDVLLRRYVRTVQQARSEALLANLDALTGLPNRRQLLTWLGEHVPVQT 230

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           +  LS++ FD+D+FK++ND FGH VGD V+   +  +          GR GGEEF     
Sbjct: 231 DAPLSVILFDLDHFKRVNDTFGHDVGDDVLRATAAVMGGALRRETPFGRWGGEEFLVVLP 290

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
           G+    A  +A  +R  + +  +  +      +T S G+ +    E +  ++ RAD ALY
Sbjct: 291 GADVAHAQAVAERVRSALASGPMTRAG----RVTASFGVTQAQPGESVEGVLKRADDALY 346

Query: 246 VAKKSGRNRV 255
            AK +GR++V
Sbjct: 347 AAKHAGRDQV 356


>gi|302879078|ref|YP_003847642.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
            capsiferriformans ES-2]
 gi|302581867|gb|ADL55878.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
            capsiferriformans ES-2]
          Length = 1302

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 77/192 (40%), Gaps = 21/192 (10%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
              + E       I QL+  D L+ L N       L              +++F D+D FK
Sbjct: 1106 RDITERKKLEADIHQLAFYDTLTHLPNRRLMNERLAHAIMASRRSERYCALMFLDLDNFK 1165

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA------LGSSEQEAAI 194
             +ND  GH VGD ++  ++ +L         V R GG+EF          L  S  +A  
Sbjct: 1166 PLNDTHGHVVGDALLVEVARRLKTCVREIDTVSRFGGDEFTVMLSELDVTLSDSVMQAQT 1225

Query: 195  LANDLRKIIENSQINISSGPSI-------HITISAGIAER-CHKEPISTIIYRADQALYV 246
            +A  +R  +    +       +       H ++S GIA    H      I+  AD A+Y 
Sbjct: 1226 IAEKIRGSLAEPYLLTIRHEGVADTIVKHHCSVSIGIAVFIGHDAEGDEILKWADAAMYQ 1285

Query: 247  AKKSGRNRVVCF 258
            AK +GRN++  +
Sbjct: 1286 AKAAGRNQICFY 1297


>gi|229174719|ref|ZP_04302243.1| Sensory box/GGDEF family protein [Bacillus cereus MM3]
 gi|228608709|gb|EEK66007.1| Sensory box/GGDEF family protein [Bacillus cereus MM3]
          Length = 431

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          +EK++++ FDID FK +
Sbjct: 255 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNDEKIALILFDIDNFKTV 314

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 315 NDTYGHDFGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 374

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE    +  S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 375 IETKHFSGIS----KLTASFGVALYEQGITREELMQRADIALYEAKKNGKNQVCVY 426


>gi|167586955|ref|ZP_02379343.1| diguanylate cyclase [Burkholderia ubonensis Bu]
          Length = 482

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 65/250 (26%), Positives = 104/250 (41%), Gaps = 38/250 (15%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI------LK 91
           ++A  IF    FL        YG+   L    S   I  +   L+  +S S+      L+
Sbjct: 240 WLAHAIFAGGFFLLS------YGVVQALQTTRSFSAI-YSQEDLMSRLSESMSRTESALQ 292

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +  ++  L+  D L+G  N   FI                 S++ FD+D FK IND
Sbjct: 293 ELRRTNQKLEYLAATDPLTGASNRRQFIGLVEREIQRAERDGTPFSLLAFDLDNFKNIND 352

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTP----------------MFVGRLGGEEFAAAALGSS 188
            +GH +GD+V+  +  Q +                        + R+GGEEF A      
Sbjct: 353 AYGHQIGDEVLRGVVRQCIEAVRPGSGTARGGGDEFVVRPAGGIARVGGEEFMALLPEMP 412

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVA 247
            + A + A  LR  I ++   +     + +T+S G+A+       +  ++   D+ LY A
Sbjct: 413 LEGARMTAERLRSSIASAPFGL-DFKRVQVTVSVGVAQYGIDGSTVDALLRAVDERLYQA 471

Query: 248 KKSGRNRVVC 257
           K+ GRNRVV 
Sbjct: 472 KREGRNRVVA 481


>gi|163760787|ref|ZP_02167867.1| probable urease-associated protein [Hoeflea phototrophica DFL-43]
 gi|162282109|gb|EDQ32400.1| probable urease-associated protein [Hoeflea phototrophica DFL-43]
          Length = 261

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 77/208 (37%), Positives = 112/208 (53%), Gaps = 2/208 (0%)

Query: 51  FYIGLTPFYGL-EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCL 109
           ++ GL P+  + + + +  +    I+ TIS+      G  + +L +S + +  LSR D L
Sbjct: 38  YFSGLMPYEKMGDALFLATVLTPPIAFTISVAAYIAVGFAIHDLGVSRDELEWLSRTDML 97

Query: 110 SGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
           SGL N  AF+++  +   + ++V FDID FK +ND+ GH  GDKVI  +++ L  VFG  
Sbjct: 98  SGLANRRAFLTAFETTEGEKTMVVFDIDRFKTVNDSHGHSAGDKVIGEVANMLSTVFGDR 157

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               RLGGEEFA  +      E A L+   R  I   QI +     + +T+SAGIA    
Sbjct: 158 SLCARLGGEEFAVFSGEVPFGEFAALSELARMRIAGLQIEVDDSV-VQVTVSAGIARCSE 216

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVC 257
            E  S    RAD+ LY AK SGRNRV+ 
Sbjct: 217 NETFSQTFSRADKLLYRAKTSGRNRVMF 244


>gi|118480445|ref|YP_897596.1| GGDEF domain-containing protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|118419670|gb|ABK88089.1| possible GGDEF domain protein [Bacillus thuringiensis str. Al
           Hakam]
          Length = 351

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 12/227 (5%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           S+F   + F  N++  +I   P   L   +   ++L ++  +++  + +IS + + +   
Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLSMLFKDM-SIVALYLVCSSVAAYITFISANYVLQSNE 182

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
            + ++ Q + ID L+GL N   F   +  +       N+ L ++  DID+FK +ND +GH
Sbjct: 183 LFQKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNDSLCLLLIDIDHFKSVNDTYGH 242

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           P GD+V+  +   L  V   P    R GGEEFA             +   +R  +E    
Sbjct: 243 PAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRTAVEKHSF 302

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  G  I IT+S GI+    ++     I  AD ALY +K++GRN+V
Sbjct: 303 QLLDGTKIKITVSVGISVY--EQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|91775536|ref|YP_545292.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacillus flagellatus KT]
 gi|91709523|gb|ABE49451.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacillus flagellatus KT]
          Length = 722

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 11/189 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
           Y     + +       I++ +  D L+GL N + F   L           ++L+I+F D+
Sbjct: 259 YGVARDISDRKKVEEVITRQAYHDTLTGLPNRALFKDRLNVALNHAKRNQQQLAIMFLDL 318

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAIL 195
           D FK +ND  GH  GD+++  ++ +L         + R+GG+EF        + ++A+++
Sbjct: 319 DRFKWVNDTLGHFYGDELLKHVAQRLSGCLRAQDTLARMGGDEFTLLLHDLQQPEDASLV 378

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A  +    E  +  +     I I+ S GIA    H + I T+I  AD A+Y  K  G+N 
Sbjct: 379 AAKIVD--ELKRPFLLDEREIFISSSIGIALYPDHGDTIETLIKSADIAMYHVKWRGKNG 436

Query: 255 VVCFSDIEN 263
              +    N
Sbjct: 437 YQYYEASMN 445


>gi|52141448|ref|YP_085381.1| sensory box/GGDEF family protein [Bacillus cereus E33L]
 gi|118479248|ref|YP_896399.1| sensory box/GGDEF family protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|229093102|ref|ZP_04224224.1| Sensory box/GGDEF family protein [Bacillus cereus Rock3-42]
 gi|51974917|gb|AAU16467.1| possible sensory box/GGDEF family protein [Bacillus cereus E33L]
 gi|118418473|gb|ABK86892.1| sensory box/GGDEF family protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|228690251|gb|EEL44044.1| Sensory box/GGDEF family protein [Bacillus cereus Rock3-42]
          Length = 431

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          NE ++++ FDID FK +
Sbjct: 255 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAV 314

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 315 NDTYGHDFGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 374

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q +  S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 375 IETKQFSGIS----KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCIY 426


>gi|46202728|ref|ZP_00052706.2| COG0840: Methyl-accepting chemotaxis protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 567

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 61/202 (30%), Positives = 93/202 (46%), Gaps = 12/202 (5%)

Query: 64  ILVENLSLVIISITISLLLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +  E LS+  I        GY++  S + E   S  R+   +  D L+GL N   F ++L
Sbjct: 356 VYPEWLSITAIRDRGGETHGYVATFSNIAERKRSETRMRWQAEHDALTGLANRPYFETAL 415

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     ++ L ++F D+D FK+IND+ GH  GD V+A ++ +L  V  +   V R+
Sbjct: 416 AVALSQARENDDDLGLLFIDLDGFKEINDSLGHAAGDSVLAAVAKRLQQVVRSDDLVARM 475

Query: 176 GGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EFA        E +A  +A  +   +  S+     G    I  S GIA    H    
Sbjct: 476 GGDEFAVVIPKLHREADAQHIAEKIVSRL--SEPFAVGGVQARIGASIGIALYPHHGTSP 533

Query: 234 STIIYRADQALYVAKKSGRNRV 255
             +   AD A+Y  K+ GRN V
Sbjct: 534 EQLTSAADGAMYRRKQKGRNGV 555


>gi|332533290|ref|ZP_08409156.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037172|gb|EGI73628.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 673

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 90/174 (51%), Gaps = 8/174 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFG 147
           EL  +  ++ Q +  D L+ L N   F   L S       K +++F D+D FK++ND+ G
Sbjct: 233 ELENANIQLQQYAYQDGLTDLPNRRYFYEKLQSLVSIKGMKFALIFIDLDGFKEVNDSLG 292

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206
           H  GD ++  ++ +L     T   V RLGG+EF     G +S  EA+ +A  ++  +  S
Sbjct: 293 HDYGDLLLHQVATRLQSCITTKDTVARLGGDEFTLILEGVNSPDEASKIAEAVKSSLMQS 352

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I I    ++++T S G+         +  ++ RADQA+Y++K  GRNR   FS
Sbjct: 353 -IKIKK-ETVYVTASIGLTFFPADGLTVEELVRRADQAMYLSKNKGRNRYEFFS 404


>gi|302186038|ref|ZP_07262711.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 748

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 89/189 (47%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
            S L+E       ++ ++  D L+ L N +  ++ L +         E+ +++F D+D F
Sbjct: 300 QSRLEERERISEELTYIAFHDELTSLFNRAYLMNELTTAFEIRDPRYERATVLFLDLDGF 359

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
           K +ND+ GH  GDK++  ++++L     +   + R+GG+EFA   +G  + + A  +A  
Sbjct: 360 KVVNDSMGHLAGDKLLKAVANRLQTCVRSNDVLARIGGDEFAILLMGKDQPETAVKMAER 419

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           +   +  + I I  G  I I+ S GI            ++  AD A+Y AKK GR R   
Sbjct: 420 IVSQLHTA-IQI-EGQDIFISCSIGIVTAGESHTKPEELLRDADVAMYSAKKQGRGRWSI 477

Query: 258 FSDIENNTC 266
           F+       
Sbjct: 478 FNSSMREAA 486


>gi|237793653|ref|YP_002861205.1| GGDEF/HD domain protein [Clostridium botulinum Ba4 str. 657]
 gi|229263853|gb|ACQ54886.1| GGDEF/HD domain protein [Clostridium botulinum Ba4 str. 657]
          Length = 567

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 78/273 (28%), Positives = 128/273 (46%), Gaps = 36/273 (13%)

Query: 28  MIYFSIFFSIFIATVIFIAN---IFLFYIGLTPFY-GLEY-ILVENLSLVIISIT----- 77
           ++   +FF + + T  + +    +FLF I +T    G++Y I++  L+ +II I      
Sbjct: 91  IVLILLFFVVVLGTGTYASQYKFLFLFMIIITTIQSGMKYGIIMACLASLIILIMDIVCV 150

Query: 78  -----------------ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
                            + +L  +  G  +K       ++  L   D L+ + NH  F  
Sbjct: 151 PNLVVNEYFEQDLILAGVLILTAWPLGFYVKVENEHIEKLESLVNKDGLTDVYNHRFFHD 210

Query: 121 SL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           +L          NE LS++F DIDYFK  ND +GH  GD+V+  + + L         V 
Sbjct: 211 ALSKKVIECEEENEALSMIFIDIDYFKHYNDLYGHQKGDQVLKTIGEILKNNTRKEDIVA 270

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERCHKEP 232
           R GGEEF+     +SE+EA  +A ++RK IE +      + P+ ++T+S GI+   +K  
Sbjct: 271 RYGGEEFSVLLPNTSEEEAINIAENIRKKIEYTYFEGEENQPNGNLTVSMGISVYPYKAK 330

Query: 233 IS-TIIYRADQALYVAKKSGRNRVVCFSDIENN 264
               +I  AD ALY AK   +NRV  ++ I + 
Sbjct: 331 SDMELIKSADDALYRAKFFNKNRVEAYTSILDE 363


>gi|157375391|ref|YP_001473991.1| sensory box protein [Shewanella sediminis HAW-EB3]
 gi|157317765|gb|ABV36863.1| sensory box/GGDEF domain protein [Shewanella sediminis HAW-EB3]
          Length = 422

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 82/175 (46%), Gaps = 7/175 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
             + +     + +      D L+GL N +     L         Y  + S++  D+D+FK
Sbjct: 246 RDVSQRTQLLDELKFKLNTDYLTGLRNRNYLDHKLISMSNRFKRYGFRFSLLMIDLDHFK 305

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           QIND +GH VGD+++   +D    +      + R GGEEFA    G+    A + A  L 
Sbjct: 306 QINDTYGHMVGDQILKCFADAATALLREGDKIARFGGEEFAVILPGTELYAAKLTATRLC 365

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           K I            I  T+S G+ E   ++ + +I+ RAD+ALY AK  GRNR+
Sbjct: 366 KHISEQAFIGPDEKVIPFTVSIGVVEFEPEDDVKSIMNRADEALYKAKVGGRNRI 420


>gi|90412493|ref|ZP_01220496.1| putative c-di-GMP phosphodiesterase A-related protein
           [Photobacterium profundum 3TCK]
 gi|90326530|gb|EAS42936.1| putative c-di-GMP phosphodiesterase A-related protein
           [Photobacterium profundum 3TCK]
          Length = 679

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 10/204 (4%)

Query: 71  LVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
           L++ +  I+L+      +      E  +   ++ QL   D L+GL N   F   L S   
Sbjct: 217 LLVTTSDITLMGSSAKLVKLQDAAENTVQQGQVEQLVHTDPLTGLYNRHGFSRRLESLIT 276

Query: 126 -NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
               L +++ DID FK IND+ GH +GD+V+  +S +L  +      +G LGG+EF    
Sbjct: 277 NETPLVMLYLDIDNFKNINDSLGHHIGDRVLQEISQRLRRLLPENAIIGHLGGDEFGIVL 336

Query: 185 LGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQ 242
                  A  ++A  +  +I  +Q       S H+  S G ++   +      ++  AD 
Sbjct: 337 SEPEHDRAGDLVAQQVISLI--NQPFDLHHFSKHLACSIGMVSYPGNGNDARILLQNADT 394

Query: 243 ALYVAKKSGRNRVVCFSDIENNTC 266
           A+Y AK  GRNR+V F++  N   
Sbjct: 395 AMYEAKNRGRNRLVKFNEAMNKEA 418


>gi|117927828|ref|YP_872379.1| diguanylate cyclase [Acidothermus cellulolyticus 11B]
 gi|117648291|gb|ABK52393.1| diguanylate cyclase [Acidothermus cellulolyticus 11B]
          Length = 517

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 78/168 (46%), Gaps = 14/168 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
            +I+ L+  D L+G+ N      +L           + +S+V  DID+FK IND FGH V
Sbjct: 341 EQITLLAATDMLTGVANRRTLEENLDRMFAQASRAAQPISVVMVDIDHFKHINDTFGHQV 400

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+ +  ++  L     +   V R GGEEF      +    AA  A +LR+ I       
Sbjct: 401 GDQTLQRVARALQQGCRSSDLVARYGGEEFVVVLPDTDLAGAATAAENLRRRI------F 454

Query: 211 SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
                  +T+S G+A    H      I+  AD ALY +K +GRNRV  
Sbjct: 455 GLDAEPRVTVSLGVATFPLHGGSPDHILSAADAALYQSKSAGRNRVTL 502


>gi|194437157|ref|ZP_03069256.1| sensory box-containing diguanylate cyclase [Escherichia coli 101-1]
 gi|253773658|ref|YP_003036489.1| diguanylate cyclase with PAS/PAC sensor [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161420|ref|YP_003044528.1| putative diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli B str. REL606]
 gi|194424140|gb|EDX40128.1| sensory box-containing diguanylate cyclase [Escherichia coli 101-1]
 gi|242377117|emb|CAQ31845.1| diguanylate cyclase, transcriptional modulator [Escherichia coli
           BL21(DE3)]
 gi|253324702|gb|ACT29304.1| diguanylate cyclase with PAS/PAC sensor [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973321|gb|ACT38992.1| predicted diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli B str. REL606]
 gi|253977534|gb|ACT43204.1| predicted diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli BL21(DE3)]
 gi|323962408|gb|EGB57991.1| GGDEF domain-containing protein [Escherichia coli H489]
 gi|323973549|gb|EGB68734.1| GGDEF domain-containing protein [Escherichia coli TA007]
          Length = 410

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 238 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 296

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 297 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 356

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 357 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 407


>gi|331646672|ref|ZP_08347775.1| putative GGDEF domain protein [Escherichia coli M605]
 gi|331045424|gb|EGI17551.1| putative GGDEF domain protein [Escherichia coli M605]
          Length = 430

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 258 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|307553968|gb|ADN46743.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli ABU
           83972]
 gi|323956351|gb|EGB52094.1| diguanylate cyclase domain-containing protein [Escherichia coli
           H263]
          Length = 564

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LLL  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTSMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LCHTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G++  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 542 LADRRLYLAKQAGRNRV-FASD 562


>gi|300117932|ref|ZP_07055699.1| GGDEF domain protein [Bacillus cereus SJ1]
 gi|298724796|gb|EFI65471.1| GGDEF domain protein [Bacillus cereus SJ1]
          Length = 351

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 108/227 (47%), Gaps = 12/227 (5%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           S+F   + F  N++  +I   P   L   +   ++L ++  +++  + +IS + + +   
Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLSMLFKDM-SIVALYLVCSSVAAYITFISANYVLQSNE 182

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
            + ++ Q + ID L+GL N   F   +  +       N  L ++  DID+FK +ND +GH
Sbjct: 183 LFQKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSVNDTYGH 242

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           P GD+V+  +   L  V   P    R GGEEFA             +   +R  +E    
Sbjct: 243 PAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAAVEKHSF 302

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  G  I IT+S GI+    ++     I  AD ALY +K++GRN+V
Sbjct: 303 QLLDGTKIKITVSVGISVY--EQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|289624169|ref|ZP_06457123.1| GGDEF [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|330869353|gb|EGH04062.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 358

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 10/225 (4%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
              + +    L P   L   + +  + + + +   + +G++S  +  +L+   N + ++S
Sbjct: 125 ALGVLISLALLNPAVNLHGNMAQIYACLPVLVIYPIFIGWMSHQVTLKLWEHRNILRKIS 184

Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           R D L+GLLNH A+   L        + +++  I   DID+FK IND +GH +GD V+  
Sbjct: 185 RTDSLTGLLNHGAWKDLLDLEYVKSQNQHQQCVIALIDIDHFKVINDTYGHLMGDTVLQN 244

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +S+ L+        +GR GG+EF      +   +A  +    R  I+    ++     + 
Sbjct: 245 ISEALMENLRDSDLIGRCGGDEFCVILPDTRLFQAREILERTRLAIDEMSYSLQ--RDLK 302

Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +++S GIA    +    S+ ++ AD+ALY+AK +GRN V    D+
Sbjct: 303 VSLSIGIAAYSPELPDASSWLHEADKALYLAKSTGRNCVASAQDM 347


>gi|224372154|ref|YP_002606526.1| ggdef domain protein [Nautilia profundicola AmH]
 gi|223589281|gb|ACM93017.1| ggdef domain protein [Nautilia profundicola AmH]
          Length = 347

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 116/231 (50%), Gaps = 11/231 (4%)

Query: 39  IATVIFIANIF-LFYIGLTPFYGLEYILVENLSLVIISITI-SLLLGYISGSILKELFIS 96
           IA +I + ++F LF+I L   Y ++      L + +++ +I   L+        KE    
Sbjct: 117 IAIIISVYSLFALFFIKLFNLYNIDAFSFMTLIMSLVAFSILGFLISLQLDKYAKETLEQ 176

Query: 97  YNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
             ++ +L+ ID L+ + N  AF               + L+++  DID+FK+IND +GH 
Sbjct: 177 SKKLEKLALIDELTQIFNRRAFFKIAQKLLMQAKREEKTLTLIMMDIDHFKKINDTYGHK 236

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+     ++  +        R+GGEEF      +SE++   + + +   I N  I+
Sbjct: 237 AGDIVLKSFVSEIQKIIRQNDLFARIGGEEFVLLLYDTSEKDVDAIVDKILNAIRNMHIS 296

Query: 210 ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           I+    I IT+S GI   +  +++ I   +  AD+ALYVAKK+GRN+ V +
Sbjct: 297 INENTMIQITVSLGIYIIQSYNEDNIQQALINADKALYVAKKTGRNKAVYY 347


>gi|188591943|ref|YP_001796541.1| diguanylate cyclase [Cupriavidus taiwanensis LMG 19424]
 gi|170938317|emb|CAP63302.1| putative diguanylate cyclase (GGDEAF) and c-di-GMP
           phosphodiesterase (EAL domain) with Chase and PAS
           domains [Cupriavidus taiwanensis LMG 19424]
          Length = 1064

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/204 (26%), Positives = 100/204 (49%), Gaps = 12/204 (5%)

Query: 69  LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           +S + +    ++  GY + G  L E       I  L+  D L+GL N +       +   
Sbjct: 585 VSALPVPAQATVAAGYQAIGYDLTERLRVDEYIRHLALHDPLTGLPNRAELGERAQALLL 644

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 E+++++  D+D+FK+IND+ GHPVGD V+  ++D++         V R+GG+EF
Sbjct: 645 QARTRGERVALLLLDLDHFKRINDSLGHPVGDDVLRTMADRIKGTVRQGDLVARMGGDEF 704

Query: 181 AAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIY 238
                G   + EA ++A  ++  +      ++ G  + +T S G+A      + ++ ++ 
Sbjct: 705 GVVLGGLRHDSEAELIAAKIQARVNEEL--VAGGQRLRVTPSVGMAVFPDDGDTLTELLK 762

Query: 239 RADQALYVAKKSGRNRVVCFSDIE 262
            AD A+Y AK+ GR R+  F+   
Sbjct: 763 SADSAVYAAKQGGRARLCRFASAM 786


>gi|311696440|gb|ADP99313.1| diguanylate cyclase [marine bacterium HP15]
          Length = 573

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 12/192 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFF 134
           LG  +  +  ++    + +++L+RID L+GL N       L    ++         +++ 
Sbjct: 383 LGQSTRELETKVAQRTDELNRLARIDPLTGLKNRRGLDEILEEEIQRARRQDSGFGVIWL 442

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK INDN GH  GD+++  ++  L          GR GG+EF              
Sbjct: 443 DIDHFKTINDNLGHQAGDQILCRVALWLKAGVRPYDHPGRWGGDEFVVLLSPCDPDTLEQ 502

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +A  +R+++E       +     +T+S G       +   TI+  AD+ALY AK  GRN+
Sbjct: 503 IARRIRELVEQESRKTGAA----VTVSVGGFFARPGDTSDTILRHADRALYRAKAGGRNQ 558

Query: 255 VVCFSDIENNTC 266
           V      ++ T 
Sbjct: 559 VCI-DTRDDETA 569


>gi|307138623|ref|ZP_07497979.1| putative diguanylate cyclase [Escherichia coli H736]
 gi|331642576|ref|ZP_08343711.1| cellulose synthesis regulatory protein [Escherichia coli H736]
 gi|331039374|gb|EGI11594.1| cellulose synthesis regulatory protein [Escherichia coli H736]
          Length = 558

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 97/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+    T  LL+  Y+   +   +++  + +   +  D L+ L N  A      S   
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMASNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARSLAK 415

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               +    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 536 LADRRLYLAKQAGRNRV-FASD 556


>gi|257094786|ref|YP_003168427.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047310|gb|ACV36498.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 708

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 91/214 (42%), Gaps = 16/214 (7%)

Query: 64  ILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  E L++  I  +  +   Y+ S S + E   +   I +L+  D L+ L N       L
Sbjct: 236 IYAELLTITAIVASGGITTHYVASFSDITEDKQAEAEIHRLAYYDALTRLPNRRLLQDRL 295

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                    +    ++ F  +D FK +ND  GH VGD ++  ++  L         V RL
Sbjct: 296 GQALAAAARHGLYGALFFIGLDNFKTLNDTRGHDVGDLLLVEVAQCLRAQVREGDTVARL 355

Query: 176 GGEEFAAAALGSS--EQEAAILA----NDLRKIIENSQINISSGPSIHITISAGIAERCH 229
           GG+EF     G S    EAA +A    + LR+    S+     G      +S G++    
Sbjct: 356 GGDEFVLLLDGVSGNADEAAAVAKEVGDKLREA--TSRPFSLDGQEYRCKLSIGVSLFAA 413

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            + +  +  RAD ALY AK +GR+R+  F     
Sbjct: 414 LDTVEELFKRADLALYQAKNAGRDRLRFFDPAMQ 447


>gi|170697320|ref|ZP_02888413.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
 gi|170137774|gb|EDT06009.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10]
          Length = 506

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 12/190 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFD 135
           ++    L++       ++ L+R D L+GL N  A  ++L    E+L        S++F D
Sbjct: 312 WLLAFALRDNLRKQTLLTDLTRTDPLTGLHNRRALDAALADEWERLQRGSDGSLSVLFID 371

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
            D+FKQ ND +GH  GD  + FL++ +            R GGEEF A    + E+ A  
Sbjct: 372 ADHFKQYNDRYGHAQGDTALRFLAECIRAHTRRRGDLAARYGGEEFVAVLPDTDERGAQQ 431

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGR 252
           +A  +R  +E ++++         T+S G A   R     +  + ++AD ALY AK+ GR
Sbjct: 432 VAEAIRLAVERNRLDGFDATIPAFTVSIGCATGHRARPPSVHALTHQADLALYAAKRQGR 491

Query: 253 NRVVCFSDIE 262
           NRV   +D+E
Sbjct: 492 NRVCV-ADVE 500


>gi|192291950|ref|YP_001992555.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhodopseudomonas palustris TIE-1]
 gi|192285699|gb|ACF02080.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhodopseudomonas palustris TIE-1]
          Length = 873

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 9/187 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFK 140
           G++  E   S  +I++L+  D L+GL N +     +        +   +++ F D+D FK
Sbjct: 402 GALAIERMESRAQIARLAYFDMLTGLPNRARLRDLIADATAACPHGRTVALAFLDVDNFK 461

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH  GD+ +   + +L         VGRLGG+EF          E   +   + 
Sbjct: 462 DINDTLGHAAGDEFLVEFARRLRDQVQPGDVVGRLGGDEFVVVLPNREPAEIEPVVARIN 521

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +      + +   + ++ S G++        I ++I +AD A+Y AK+SGR+    F+
Sbjct: 522 EAL-MLPFALCNSQ-VPMSASIGVSLYPDNATDIDSLINQADTAMYRAKRSGRSTYRLFN 579

Query: 260 DIENNTC 266
              +   
Sbjct: 580 CDMHGAA 586


>gi|163851116|ref|YP_001639159.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163662721|gb|ABY30088.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 574

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 12/169 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
             ++   +  D L+GL N      SL  Y         K+S++  D+D+FK++ND  GH 
Sbjct: 384 REKLRNQALRDPLTGLYNRRYMEDSLERYVRLAEREGRKVSVIMIDLDHFKRLNDEHGHA 443

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD V+   +  +V          R GGEE          ++AA  A  +R  IE+    
Sbjct: 444 IGDAVLCEAAAAIVGALRETDVACRYGGEEMIVFLPDCDLEDAAAKAEQIRGRIES---- 499

Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           +S      ++ S G+A         + +I  AD ALY AK +GRN+V  
Sbjct: 500 LSGTHGAKVSASLGVASVPSTSGTSAELIRAADTALYRAKHNGRNQVAV 548


>gi|83644174|ref|YP_432609.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83632217|gb|ABC28184.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 427

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 8/175 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           ++     ++ +LS  D L+GL N   F   +         Y     +V  DID+FK+IND
Sbjct: 249 KIAKQAEQLKELSIRDELTGLYNRRFFNEEVKVLHANALRYGNGFCLVLGDIDFFKRIND 308

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            + H VGD+V+  ++  L+        V R GGEE   A   +S Q A  +   +RK IE
Sbjct: 309 GYSHVVGDEVLKQVAKILMNSIRNSDIVARYGGEEMVLALPNTSPQAAMEMMERIRKTIE 368

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               + S    + +T+S GI +  + E    ++  AD+ LY AK +GRN+V   S
Sbjct: 369 QHPWD-SIAEGMKVTMSFGICDETNGEHFEHMLAVADELLYKAKNNGRNQVCSLS 422


>gi|24375887|ref|NP_719930.1| GGDEF family protein [Shewanella oneidensis MR-1]
 gi|24350860|gb|AAN57374.1|AE015874_1 GGDEF family protein [Shewanella oneidensis MR-1]
          Length = 344

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 10/185 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           L  I  +   EL  + NR+ +LS  D L+ + N   F   L          N  LS++  
Sbjct: 151 LESIIQARTYELAEANNRLEKLSNTDGLTNIGNRRLFDQMLQKEWSRGQRNNTPLSLIML 210

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAA 193
           DID+FK  ND++GH  GD  +  L++ L          V R GGEEF      +  Q A 
Sbjct: 211 DIDHFKLFNDHYGHLAGDDCLKMLANGLSQSGRRAGELVARYGGEEFVILLPNTDLQTAL 270

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSG 251
             A  + ++I++  I         +T+S G+A      K     ++++AD ALY+AK +G
Sbjct: 271 DTAKHVHQLIQSLAIPHIKTNLGIVTVSVGVACLLPSDKHNALELVHQADTALYLAKSAG 330

Query: 252 RNRVV 256
           RN + 
Sbjct: 331 RNCIR 335


>gi|54302166|ref|YP_132159.1| hypothetical protein PBPRB0486 [Photobacterium profundum SS9]
 gi|46915587|emb|CAG22359.1| hypothetical protein PBPRB0486 [Photobacterium profundum SS9]
          Length = 601

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 68/165 (41%), Positives = 86/165 (52%), Gaps = 13/165 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  LS  D L+GL N     S           Y    S++ FDID+FK+IND +GH VGD
Sbjct: 440 IELLSITDSLTGLYNRYKLESVLLSESSRCDRYKNNFSVIIFDIDFFKKINDTYGHLVGD 499

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  L+  L         V R GGEEF   A   +  +  I A  LR +IEN       
Sbjct: 500 DVLIHLAKLLKENTSITDVVSRWGGEEFLIVACNINLHDTYIFAEKLRILIENYNF---- 555

Query: 213 GPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            PSI  +TIS G+A+  + E IS ++ RAD ALY AKK GRN+VV
Sbjct: 556 -PSIGKMTISCGVAQYINNESISELVSRADFALYQAKKMGRNKVV 599


>gi|39936233|ref|NP_948509.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           CGA009]
 gi|39650088|emb|CAE28611.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS and GAF domains [Rhodopseudomonas palustris CGA009]
          Length = 873

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 9/187 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFK 140
           G++  E   S  +I++L+  D L+GL N +     +        +   +++ F D+D FK
Sbjct: 402 GALAIERMESRAQIARLAYFDMLTGLPNRARLRDLIADATAACPHGRTVALAFLDVDNFK 461

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH  GD+ +   + +L         VGRLGG+EF          E   +   + 
Sbjct: 462 DINDTLGHAAGDEFLVEFARRLRDQVQPGDVVGRLGGDEFVVVLPNREPAEIEPVVARIN 521

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +      + +   + ++ S G++        I ++I +AD A+Y AK+SGR+    F+
Sbjct: 522 EAL-MLPFALCNSQ-VPMSASIGVSLYPDNATDIDSLINQADTAMYRAKRSGRSTYRLFN 579

Query: 260 DIENNTC 266
              +   
Sbjct: 580 CDMHGAA 586


>gi|297537734|ref|YP_003673503.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Methylotenera sp.
           301]
 gi|297257081|gb|ADI28926.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera sp. 301]
          Length = 713

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 11/188 (5%)

Query: 81  LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132
            +GY   G  + E+     R+  L+  D L+GL N + F   L          N ++ ++
Sbjct: 265 FIGYRGVGRDVSEMIALNRRVEFLASHDELTGLPNRNLFKQRLSHAVVKASRTNSQVLLL 324

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           FFD+D+FK +ND  GH  GD ++   + ++         + RLGG+EF      +S Q+A
Sbjct: 325 FFDLDHFKLVNDTLGHEAGDLLLMMATKRISECIRASDTLCRLGGDEFVMIMEDASPQDA 384

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSG 251
             L  D+      +   +     ++ TIS G++          +++  AD A+Y AK++G
Sbjct: 385 HRLVRDIIAKF-TTPFELYQ-QRVYCTISIGVSVYPDDTVDPQSLLVFADLAMYRAKQNG 442

Query: 252 RNRVVCFS 259
           RN    ++
Sbjct: 443 RNCFEFYT 450


>gi|119476185|ref|ZP_01616537.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [marine gamma proteobacterium
           HTCC2143]
 gi|119450812|gb|EAW32046.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [marine gamma proteobacterium
           HTCC2143]
          Length = 799

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 12/193 (6%)

Query: 81  LLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132
           L+GYI   + + E+  +  +  +++  D L+GL N   F + L             L ++
Sbjct: 337 LIGYIGAINDVSEIKNAQTQFEEMAYYDMLTGLANRRLFRNRLEHVVSNLKKEQSSLGLI 396

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQE 191
             D+D FK +ND  GH  GDK++  ++ +L         V RL  +EFA    G  + + 
Sbjct: 397 LVDLDRFKSVNDAMGHDAGDKLLKIVAGRLQQCVRASDTVARLSSDEFAIILPGIKNSRT 456

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKS 250
            A +A  +   I+  Q  + +     +T S GIA    +     TII  AD AL+ AK +
Sbjct: 457 TAHVAEKVLTAIQ--QPVLINETEQRLTASIGIAIAPQNGTDAKTIIKNADLALFHAKDN 514

Query: 251 GRNRVVCFSDIEN 263
           GRN    F+   N
Sbjct: 515 GRNNYQFFTVEMN 527


>gi|56476956|ref|YP_158545.1| hypothetical protein ebA2702 [Aromatoleum aromaticum EbN1]
 gi|56312999|emb|CAI07644.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 1039

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 95/207 (45%), Gaps = 12/207 (5%)

Query: 67  ENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--- 122
           + +++  +  T   +  Y++  S + E       + + +  D L+GL N S     L   
Sbjct: 563 QWVTITAVRDTDGRIAEYVTLFSDITERKQQEVAMWRQANFDPLTGLANRSLLQDRLDRA 622

Query: 123 ----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                 +  K+ ++F D+D FK IND+ GH VGD+++  ++ +L         V RLGG+
Sbjct: 623 LAHARRHGCKVGLLFLDLDGFKWINDSLGHDVGDELLVDVARRLNSCVRDEDTVARLGGD 682

Query: 179 EFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTI 236
           EF       +   +   +A+ L  ++   +     G   HI+ S GI       + + T+
Sbjct: 683 EFTVVVHDLADRADLGAIADKLVAVLR--EPFALRGARHHISGSVGITVFPDDGDDVQTL 740

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIEN 263
           +  AD A+Y AK++G+NR   ++    
Sbjct: 741 LRNADIAMYKAKQAGKNRAQPYAPHMQ 767


>gi|331647549|ref|ZP_08348641.1| cellulose synthesis regulatory protein [Escherichia coli M605]
 gi|330911761|gb|EGH40271.1| hypothetical protein ECAA86_02120 [Escherichia coli AA86]
 gi|331043273|gb|EGI15411.1| cellulose synthesis regulatory protein [Escherichia coli M605]
          Length = 558

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 99/202 (49%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LLL  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTSMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH VGD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQVGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G++  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 536 LADRRLYLAKQAGRNRV-FASD 556


>gi|300935449|ref|ZP_07150444.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
 gi|300459331|gb|EFK22824.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
          Length = 374

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 202 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 260

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 261 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 320

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 321 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 371


>gi|89093543|ref|ZP_01166491.1| PAS:GGDEF protein [Oceanospirillum sp. MED92]
 gi|89082233|gb|EAR61457.1| PAS:GGDEF protein [Oceanospirillum sp. MED92]
          Length = 438

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 10/171 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHS----AFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           EL     ++  ++  D L+G+ N           L   N  +SI+  D+D+FK IND +G
Sbjct: 268 ELKEKNRQLKHMAMHDELTGIANRRSAKLYLDELLSPTNPLISILMIDVDHFKNINDTWG 327

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+V+  L  +L         + R GGEEF      +    A  +A  LR ++E S 
Sbjct: 328 HSEGDQVLQGLVAELNTYLRAADMLARWGGEEFICILPDTGVSAAESVAEKLRSVVEKSL 387

Query: 208 INISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           +  ++     +TIS G+A     +  I  ++  AD ALY AK  GRNRVV 
Sbjct: 388 LGKAT-----VTISIGVASTEFGQMQIDQLLRCADHALYAAKSDGRNRVVM 433


>gi|302186073|ref|ZP_07262746.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 509

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 12/192 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIV 132
           L L ++    L+    + + ++ L+  D L+GL N                   ++LS++
Sbjct: 312 LWLTWLLCRELRRRHRAEDALASLAATDGLTGLDNRRQLDEAMETEWARAQRSGKQLSLL 371

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQE 191
             D+D+FK  N+  GH  GD+ +  ++  +      P   + R GGEEF      +    
Sbjct: 372 MIDVDHFKAFNERHGHQGGDEALRLIAQTISYCIRRPGDRIARYGGEEFVVVLPETDLPG 431

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKK 249
           A ++A  +RK  E+  + +++  +  IT+S G+A       + +      AD+ALY AK 
Sbjct: 432 AMLIAEKIRKAAESLPLFMNAEHA--ITVSIGVASEVVRQGDKLEAFFGVADKALYQAKD 489

Query: 250 SGRNRVVCFSDI 261
           +GRNRV   S +
Sbjct: 490 NGRNRVEYRSSV 501


>gi|301647158|ref|ZP_07246979.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|331641908|ref|ZP_08343043.1| putative GGDEF domain protein [Escherichia coli H736]
 gi|301074644|gb|EFK89450.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|331038706|gb|EGI10926.1| putative GGDEF domain protein [Escherichia coli H736]
          Length = 430

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 258 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|294626301|ref|ZP_06704904.1| response regulator [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292599447|gb|EFF43581.1| response regulator [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 515

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 93/198 (46%), Gaps = 14/198 (7%)

Query: 71  LVIISITISLLLG--YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE- 127
           +V+ ++  +LLLG        L+ +  +  ++S  + +D L+G+ N  AF   L    + 
Sbjct: 315 IVVAALGCTLLLGVGIWLDLQLRRMHRNEAKLSTEAWVDALTGIANRRAFDHRLSRALQD 374

Query: 128 ------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEF 180
                  LS++  D+D+FK  ND +GH  GD  +  ++  +      +     R GGEEF
Sbjct: 375 AVRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCSRHSEDLAARYGGEEF 434

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKE---PISTI 236
                 +    A  LA+ +R  +    +   S P S H+T+S G A     E     + I
Sbjct: 435 GMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGAATFEPGEAPLSPNAI 494

Query: 237 IYRADQALYVAKKSGRNR 254
           ++ AD ALY AK+ GRNR
Sbjct: 495 VHDADSALYRAKQKGRNR 512


>gi|39934196|ref|NP_946472.1| putative diguanylate cyclase/phosphodiesterase [Rhodopseudomonas
           palustris CGA009]
 gi|192289722|ref|YP_001990327.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           TIE-1]
 gi|39648044|emb|CAE26564.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
           [Rhodopseudomonas palustris CGA009]
 gi|192283471|gb|ACE99851.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           TIE-1]
          Length = 776

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 85/187 (45%), Gaps = 12/187 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--------KL-SIVFFDIDYF 139
            + E   +  RI  L+R D L+ L N  +F   +    E        +L +++F D+D F
Sbjct: 320 DITERRNAEARIVHLARYDELTALPNRVSFRDEIERILEAEHGRGKTRLSALLFIDLDQF 379

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           KQIND  GHP GD+++  ++++L  +     +V R GG+EF        S ++AA LA  
Sbjct: 380 KQINDTLGHPCGDRLLCSVAERLRDMLRPDDYVARFGGDEFVVFQQNIASNEDAAALARR 439

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   + +    +     + I  S GIA          ++  AD ALY AK  GR     F
Sbjct: 440 IVDRLSDR--YLIDHHVVEIGASIGIAMTSPGTKADILLKNADMALYRAKADGRGNYCFF 497

Query: 259 SDIENNT 265
            +    T
Sbjct: 498 REEMAQT 504


>gi|121998358|ref|YP_001003145.1| PAS/PAC sensor-containing diguanylate cyclase [Halorhodospira
           halophila SL1]
 gi|121589763|gb|ABM62343.1| diguanylate cyclase with PAS/PAC sensor [Halorhodospira halophila
           SL1]
          Length = 324

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 15/217 (6%)

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCL 109
           L +  + P   + +I  E     I +      +G+     + +       + + ++ D L
Sbjct: 110 LQFRAIRPDQQVRHIRSEGRLEPIPNDQSVYFVGF--EEDVTDRVALEQELERQAQQDGL 167

Query: 110 SGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +G  N                 Y ++L+ +  D D FK INDN+GH  GD+++  L    
Sbjct: 168 TGTYNRRKMDNLLHQERERAIRYRQQLTAMLIDADGFKAINDNYGHEAGDELLHDLVHCC 227

Query: 163 -VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                 T   +GR GG+EF      +SE+ A  +A  +R  +E  Q    +     IT+S
Sbjct: 228 FRPCLRTIDHLGRWGGDEFLVILPETSEEAAYHVAERIRDQVETLQPGPGA-----ITVS 282

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            GI+    +E     +  AD ALY AK+ GRNR+  +
Sbjct: 283 IGISAYQPEESPRDWLRSADFALYEAKRGGRNRITRY 319


>gi|89108189|ref|AP_001969.1| predicted diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli str. K-12 substr. W3110]
 gi|90111253|ref|NP_415857.2| diguanylate cyclase, csgD regulator [Escherichia coli str. K-12
           substr. MG1655]
 gi|170081020|ref|YP_001730340.1| diguanylate cyclase domain-containing signalling protein
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238900576|ref|YP_002926372.1| putative diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli BW2952]
 gi|161789052|sp|P77302|YDAM_ECOLI RecName: Full=Probable diguanylate cyclase YdaM; Short=DGC
 gi|85674914|dbj|BAA14945.2| predicted diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli str. K12 substr. W3110]
 gi|87081881|gb|AAC74423.2| diguanylate cyclase, csgD regulator [Escherichia coli str. K-12
           substr. MG1655]
 gi|169888855|gb|ACB02562.1| predicted diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238862243|gb|ACR64241.1| predicted diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli BW2952]
 gi|260449525|gb|ACX39947.1| diguanylate cyclase with PAS/PAC sensor [Escherichia coli DH1]
 gi|309701642|emb|CBJ00949.1| putative signaling protein [Escherichia coli ETEC H10407]
 gi|315135982|dbj|BAJ43141.1| putative diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli DH1]
 gi|315619424|gb|EFU99968.1| uncharacterized protein ydaM [Escherichia coli 3431]
 gi|323937667|gb|EGB33935.1| GGDEF domain-containing protein [Escherichia coli E1520]
 gi|323942288|gb|EGB38459.1| GGDEF domain-containing protein [Escherichia coli E482]
          Length = 410

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 238 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 296

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 297 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 356

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 357 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 407


>gi|107100085|ref|ZP_01364003.1| hypothetical protein PaerPA_01001106 [Pseudomonas aeruginosa PACS2]
          Length = 353

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 65/281 (23%), Positives = 117/281 (41%), Gaps = 40/281 (14%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYF--SIFFSIF-IATVIFIANIFLFYIGLTPFYGLEYI 64
           +L+ +L H  +L      TFM+++  ++ F +F +   +F     L +I  +  Y +E +
Sbjct: 71  WLTYFLYHVDSLRG----TFMVFYVLALLFGVFQLPPRVFARCAALAFIAFSGIYLVEAL 126

Query: 65  ----------LVENLSLVIISITISLLLGYISGSILKELFISY-------------NRIS 101
                      ++ L + I+ + +SL   YI     +     Y              ++ 
Sbjct: 127 QQRLELPGRAALQVLVMFIVMVWLSLFASYIQAMRQRMRQRRYALQAHQDTLRGMMRQLE 186

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            L   D L+GL N   F+            N +  +   D+D+FK+IND  GH  GD+V+
Sbjct: 187 DLVATDELTGLFNRRHFMRMASRALEDLLPNRQHGLALIDLDHFKRINDRHGHAAGDRVL 246

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +            + R GGEEF      +  ++       LR   + ++     G +
Sbjct: 247 QTFAAVARSCLRDGDVLARYGGEEFVLLLPHADAEQLESCCERLRLAFQQAE---PVGVT 303

Query: 216 I-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  +++S G+      + +   + RADQALY AK+ GRNR 
Sbjct: 304 VDTLSLSVGMTLLYADDDLDEALQRADQALYRAKRGGRNRC 344


>gi|119776019|ref|YP_928759.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B]
 gi|119768519|gb|ABM01090.1| GGDEF domain protein protein [Shewanella amazonensis SB2B]
          Length = 424

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 8/165 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
            + +L+  D L+G+ N SAF S   +   K       + I+  D+D+FK IND FGH  G
Sbjct: 247 ELEKLAYTDGLTGIANRSAFFSRAEAELRKSHRLSYDVGILMLDLDHFKSINDTFGHEAG 306

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++D +          GR+GGEEFA    G+ +     LA  L+  + N+ ++  
Sbjct: 307 DNVLKLVADTISTCLREIDMFGRVGGEEFAILVPGTDKFGMQALAERLKSAVSNTDVSFL 366

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                 I++S G  +    E + + + RAD+ LY AK++GRN  V
Sbjct: 367 DAEK-KISVSIGYTKIYPNESLKSALKRADENLYSAKRNGRNCYV 410


>gi|315295348|gb|EFU54678.1| diguanylate cyclase domain protein [Escherichia coli MS 153-1]
          Length = 430

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 80/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 258 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++ISS P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 --VSVAKVSISSLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|218558327|ref|YP_002391240.1| diguanylate cyclase, GG[D/E]EF domain signalling protein
           [Escherichia coli S88]
 gi|218365096|emb|CAR02803.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein
           [Escherichia coli S88]
 gi|307553402|gb|ADN46177.1| putative diguanylate cyclase [Escherichia coli ABU 83972]
 gi|323949056|gb|EGB44948.1| GGDEF domain-containing protein [Escherichia coli H252]
 gi|323956902|gb|EGB52634.1| GGDEF domain-containing protein [Escherichia coli H263]
          Length = 410

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 80/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 238 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 296

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 297 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 356

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++ISS P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 357 --VSVAKVSISSLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 407


>gi|144898743|emb|CAM75607.1| GGDEF domain [Magnetospirillum gryphiswaldense MSR-1]
          Length = 355

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/181 (30%), Positives = 92/181 (50%), Gaps = 9/181 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           +  L    +++ + +  D L+GL N   F  SL           + LS++  DID+FKQ 
Sbjct: 164 IARLREDLDQLKREATTDALTGLANRKLFDVSLREAALESEEDRKFLSLLMIDIDFFKQF 223

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH +GD+V+  ++  +           R GGEEFA     +  ++   +A  +R+ 
Sbjct: 224 NDTHGHMLGDQVLKLVARTIQDCIKGKDTAARYGGEEFAIILPDTRLKDGVAVAETVRRQ 283

Query: 203 IENSQI-NISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +   ++ N  +G  +  +T+S G+AE    E +   I+RAD+ALY+AK+ GRN V    D
Sbjct: 284 VAGRKVLNRRTGQVLGQVTLSVGVAEYEFGETLGAFIHRADEALYLAKRQGRNHVASQDD 343

Query: 261 I 261
           +
Sbjct: 344 L 344


>gi|331681777|ref|ZP_08382410.1| protein AdrA [Escherichia coli H299]
 gi|315616720|gb|EFU97337.1| diguanylate cyclase domain protein [Escherichia coli 3431]
 gi|323943191|gb|EGB39347.1| diguanylate cyclase domain-containing protein [Escherichia coli
           E482]
 gi|323972234|gb|EGB67444.1| diguanylate cyclase domain-containing protein [Escherichia coli
           TA007]
 gi|331080979|gb|EGI52144.1| protein AdrA [Escherichia coli H299]
          Length = 366

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 137 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAE 196

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 197 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 256

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +   ++
Sbjct: 257 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL 316

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 317 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 364


>gi|83593243|ref|YP_426995.1| response regulator receiver modulated diguanylate cyclase
           [Rhodospirillum rubrum ATCC 11170]
 gi|83576157|gb|ABC22708.1| response regulator receiver modulated diguanylate cyclase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 519

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 60/194 (30%), Positives = 92/194 (47%), Gaps = 16/194 (8%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNE---KLSI 131
           ++LL +   ++ K+   ++ R   L+  D L+GL N           +         LS 
Sbjct: 329 AVLLSFNDITVHKQREEAWQR---LALTDPLTGLGNRRLLFDRGILEVARARRGCWPLSG 385

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  D+D+FK+IND  GH  GD ++  L+D L         + R+GGEEFA     +S   
Sbjct: 386 LMIDLDHFKRINDTQGHAAGDAILRTLADTLRESLREIDVIARVGGEEFAILLPDTSLTA 445

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250
           A  +   LR   +  Q     GP   +TIS GI+        +  ++ RAD ALY AK++
Sbjct: 446 AHEVGERLRLSCQIPQP--VGGP---VTISVGISTLHPEDRGLGDMLSRADDALYRAKRN 500

Query: 251 GRNRVVCFSDIENN 264
           GR+RV    D E+N
Sbjct: 501 GRDRVEIADDSEDN 514


>gi|330982451|gb|EGH80554.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 799

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 11/194 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------ 130
           T ++LL        +EL  +  R+   +  D L+GL N S     L    +         
Sbjct: 391 TANVLLEARVRDRTRELDQANARLQHENSHDSLTGLPNRSHLQHRLRQAWQDFCSNGQQV 450

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            ++F D+D FK IND+ GH  GD ++   +++L         + RLGG+EFA  ++ +  
Sbjct: 451 IVMFIDLDRFKMINDSLGHHCGDILLVQAAERLRSCMRERDLLARLGGDEFAVLSIDTPL 510

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
           Q    +A  +    E  Q  +    ++  + S G+  A+    +  + ++  AD A+Y  
Sbjct: 511 QTGTEIAQRILTAFE--QPFVIDDHTVFSSCSIGVVGADSRFHQEPADLLRDADTAMYRV 568

Query: 248 KKSGRNRVVCFSDI 261
           K  GR+    F+  
Sbjct: 569 KNGGRDSFAVFNQA 582


>gi|239995065|ref|ZP_04715589.1| diguanylate cyclase [Alteromonas macleodii ATCC 27126]
          Length = 586

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 120/260 (46%), Gaps = 24/260 (9%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYF--SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILV 66
           ++IW+         +  T   +F  +I      A V  +A   L       F G+E  +V
Sbjct: 332 IAIWMLLIGIFAYRNGDTLAKFFLPAILCGTGGAMVSSLATWGLIPYSKWAFRGIEIGMV 391

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             +SL    ++ISL   Y      K++  +     + +R+D L+ L N  AF   +    
Sbjct: 392 LEMSL----LSISLAFNY------KQVQQARRNAERDARLDPLTSLYNRRAFEDLVYPIW 441

Query: 123 ---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                 N+ +S++  DID+FK IND +GH +GDKV+  +++++           R GGEE
Sbjct: 442 EMGKRSNKFMSVMLIDIDWFKGINDKYGHDMGDKVLKKVAEEIKGQVRGSDITFRWGGEE 501

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIY 238
           F      +    A  +A +LR  +            I +T+S G+A     +E I+ +I 
Sbjct: 502 FLVFLPNTRVHYAKQIAENLRVHL----FTHDINKFIRVTVSIGVAGTSPGEEDINVLIK 557

Query: 239 RADQALYVAKKSGRNRVVCF 258
           ++DQALY+AK  GRN+  CF
Sbjct: 558 QSDQALYLAKAKGRNKKWCF 577


>gi|90425013|ref|YP_533383.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
 gi|90107027|gb|ABD89064.1| diguanylate cyclase (GGDEF domain) [Rhodopseudomonas palustris
           BisB18]
          Length = 227

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 11/187 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDID 137
           +      +L      +   +  D L+GL N   F        +    Y   LS++ +DID
Sbjct: 34  VQMQHRADLQALALELEIKATTDPLTGLFNRGKFDVVLGYELARAERYGNPLSLIVYDID 93

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK++ND +GH  GD+V+  LS  +         + R GGEEF      +    A ++A 
Sbjct: 94  HFKEVNDAYGHQAGDRVLVQLSAIVSAAIRQTDLLVRWGGEEFVLVLPDTDGATARLVAE 153

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            LR+ IE S  +++      IT S G++     + + +++ R D ALY AK +GRNRV  
Sbjct: 154 KLRQAIEQSGFDLAG----TITCSFGVSIYVEGDSVDSLVARTDNALYRAKMNGRNRVEY 209

Query: 258 FSDIENN 264
            S    +
Sbjct: 210 ASARMMS 216


>gi|56966618|pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-Digmp
 gi|56966619|pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-Digmp
 gi|158430933|pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
           And Gtp-Alpha-S
 gi|158430934|pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
           And Gtp-Alpha-S
          Length = 459

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 14/190 (7%)

Query: 81  LLGYISGSILKELFISYNR--ISQ---LSRIDCLSGLLNHSAFISSLGSY-------NEK 128
           L   +   I ++ +  Y R  +     L+  D L+GL N       L S         + 
Sbjct: 260 LSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDP 319

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +S +  DID+FK+IND FGH +GD+V+   + +L           R GGEEF      ++
Sbjct: 320 VSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTA 379

Query: 189 EQEAAILANDLRKIIENSQINISSGPS-IHITISAGI-AERCHKEPISTIIYRADQALYV 246
             +A  +A  +R  +  S   ++ G   +++TIS G+ A     +    ++ RAD+ +Y 
Sbjct: 380 LADALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSATAGEGDTPEALLKRADEGVYQ 439

Query: 247 AKKSGRNRVV 256
           AK SGRN VV
Sbjct: 440 AKASGRNAVV 449


>gi|296332333|ref|ZP_06874794.1| putative diguanylate cyclase or phosphodiesterase [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305673612|ref|YP_003865284.1| putative diguanylate cyclase or phosphodiesterase [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296150251|gb|EFG91139.1| putative diguanylate cyclase or phosphodiesterase [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305411856|gb|ADM36975.1| putative diguanylate cyclase or phosphodiesterase [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 358

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 113/235 (48%), Gaps = 18/235 (7%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           F + + T   I+  F F I L  +    Y  + +++  ++S+ I                
Sbjct: 130 FYLLMITNSMISFSFYFLIDLHSYELHFYFWITSIAGGMLSLYII--------DHETNAH 181

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFIS--------SLGSYNEKLSIVFFDIDYFKQINDNF 146
           + + +    +  D L+G+ N   F          +  + + + ++++ DID+FK IND +
Sbjct: 182 LLFKQYKFQAHFDFLTGIYNRRKFEEITQVLYEQAANTPHFQFALIYMDIDHFKAINDQY 241

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+V+  L  +L           R+GGEEFA      +  +AA +A  +R  + ++
Sbjct: 242 GHHEGDQVLKELGSRLKQSIRNTDPAARIGGEEFAVLLPNCTLDKAAQIAERIRCAVSDT 301

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            I +++G  + +TIS G +   +  E   ++   ADQ LY AK++GRN+V CFS+
Sbjct: 302 PIRLTNGEELSVTISLGASHYPNNTEHPESLPILADQMLYKAKETGRNKV-CFSE 355


>gi|254246830|ref|ZP_04940151.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
 gi|124871606|gb|EAY63322.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
          Length = 460

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 64/259 (24%), Positives = 118/259 (45%), Gaps = 13/259 (5%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           L +W+ +   L +    T  +  ++   + IA +  + +  L  +  T  + + + +   
Sbjct: 204 LVVWVLNVLALVAVL-VTGRLRTTLDLWLAIAVLACLTDTTLNLLS-TNRFTVGWYVARV 261

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------S 121
            S+    + + +L   ++  + ++LF ++  + + S  D L+G  N S F          
Sbjct: 262 FSMFTPGVLVCVLAWEVT-MLYQQLFEAHATLIRSSARDGLTGAFNRSHFNDHFHTLFLQ 320

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEF 180
                E LS++  D+D FK  ND FGH  GD  +  +++ L      P   V R GGEEF
Sbjct: 321 ARRQGEPLSLLMVDVDRFKAYNDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEF 380

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIY 238
           A     +  + A ++A+++R  +    + +   P+  +++S G A     +      +I 
Sbjct: 381 AIVLPNTGARGARVVADEVRDAVLRLDLAMPDSPAGRVSVSVGCATVAADDLSTPDALIE 440

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD ALY AK +GRNRVV 
Sbjct: 441 AADAALYRAKDAGRNRVVV 459


>gi|222053167|ref|YP_002535529.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Geobacter sp. FRC-32]
 gi|221562456|gb|ACM18428.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Geobacter sp. FRC-32]
          Length = 446

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 12/189 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           I    + E  ++  R+ QL+  D L+ L N + F             Y    +++F D+D
Sbjct: 259 IIFRDITERTLAKRRLEQLAHYDMLTSLPNRTLFFDRFNTNLEQGKRYGIAFALLFLDLD 318

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILA 196
            FKQIND  GH VGD ++  ++++L         V R+GG+EFA      SE+ +AA +A
Sbjct: 319 RFKQINDQDGHDVGDLLLQKVAERLKGCLRKSDTVARMGGDEFAVVLSRISERKDAATVA 378

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             +  I E S      G    I +S GI+        + +++  AD A+Y AK+ G +R 
Sbjct: 379 KKI--IGELSVPFQLKGKEGSIGVSIGISIFPDDGTDLESLLKHADTAMYRAKQGG-SRF 435

Query: 256 VCFSDIENN 264
             +   E N
Sbjct: 436 EFYQAGEGN 444


>gi|104779483|ref|YP_605981.1| sensory box protein [Pseudomonas entomophila L48]
 gi|95108470|emb|CAK13164.1| putative sensory box protein [Pseudomonas entomophila L48]
          Length = 329

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 9/178 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
              + E       + +L+  D L+   N   F                 L+ +  DID F
Sbjct: 151 AEDITEKKRLEGELQRLATTDVLTQSSNRRHFFDCAQQAFDSAREDGTPLAFLLLDIDDF 210

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQIND++GH  GD+V+  ++D    V       GR+GGEEFAA   G + Q A  +A  L
Sbjct: 211 KQINDSYGHQEGDQVLQRIADAGKAVLRRGDQFGRIGGEEFAAVFPGCTAQMAEQIAERL 270

Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++ I+    +     +  +T+S G+       E + ++  RAD A+Y AK+ G+N++V
Sbjct: 271 QREIQRLSFSHEQ-QTYGVTVSQGLTGLTDEDEKLDSLFARADAAMYRAKRQGKNQIV 327


>gi|16126701|ref|NP_421265.1| response regulator PleD [Caulobacter crescentus CB15]
 gi|221235482|ref|YP_002517919.1| response regulator PleD [Caulobacter crescentus NA1000]
 gi|60390590|sp|Q9A5I5|PLED_CAUCR RecName: Full=Response regulator PleD; AltName: Full=Stalked cell
           differentiation-controlling protein; Includes: RecName:
           Full=Diguanylate cyclase; Short=DGC; AltName:
           Full=Diguanylate kinase
 gi|302425180|sp|B8GZM2|PLED_CAUCN RecName: Full=Response regulator PleD; AltName: Full=Stalked cell
           differentiation-controlling protein; Includes: RecName:
           Full=Diguanylate cyclase; Short=DGC; AltName:
           Full=Diguanylate kinase
 gi|13424011|gb|AAK24433.1| stalked-cell differentiation controlling protein [Caulobacter
           crescentus CB15]
 gi|220964655|gb|ACL96011.1| GGDEF/response regulator protein pleD [Caulobacter crescentus
           NA1000]
          Length = 454

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 14/190 (7%)

Query: 81  LLGYISGSILKELFISYNR--ISQ---LSRIDCLSGLLNHSAFISSLGSY-------NEK 128
           L   +   I ++ +  Y R  +     L+  D L+GL N       L S         + 
Sbjct: 261 LSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDP 320

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +S +  DID+FK+IND FGH +GD+V+   + +L           R GGEEF      ++
Sbjct: 321 VSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTA 380

Query: 189 EQEAAILANDLRKIIENSQINISSGPS-IHITISAGI-AERCHKEPISTIIYRADQALYV 246
             +A  +A  +R  +  S   ++ G   +++TIS G+ A     +    ++ RAD+ +Y 
Sbjct: 381 LADALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSATAGEGDTPEALLKRADEGVYQ 440

Query: 247 AKKSGRNRVV 256
           AK SGRN VV
Sbjct: 441 AKASGRNAVV 450


>gi|114562745|ref|YP_750258.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
 gi|114334038|gb|ABI71420.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
          Length = 839

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 97/213 (45%), Gaps = 11/213 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  + +++  +   ++++  Y++  + +     +  ++  L+  D L+ L N   F+S L
Sbjct: 359 IFPQAITISAVFDKLNIIQYYVAVFADISAQKQNEEKLKNLAYFDPLTQLPNRMQFMSLL 418

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                      ++L+IVF DID+FK IND+ GH +GD+++  L+ +L         + RL
Sbjct: 419 EQEVNHSHRAKKQLAIVFLDIDFFKHINDSLGHVIGDEILVELAKRLSYALSDFDVLARL 478

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
            G+EF                 + +R + E     + +  S+ +T S G+A      +  
Sbjct: 479 SGDEFVVMLPSIMGTDSVTSSVDRIRSVFER-PFILDNTQSVRLTASMGVAIYPSDGDDH 537

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            +++  AD A++ AK  GRN    +++      
Sbjct: 538 DSLLRNADAAMHRAKLDGRNNYAFYTESMTKQA 570


>gi|114564388|ref|YP_751902.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114335681|gb|ABI73063.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 359

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 111/242 (45%), Gaps = 17/242 (7%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY-ILVENLSLVIISITISLLL 82
           P    +   I        V  I  + +    L       Y I + N+ L + +I      
Sbjct: 104 PVLSYLLLGIKLGTLYTCVYMIGGVGILVNALLLDIATIYPITIANIVLCLAAI------ 157

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFD 135
             +S S   +   +  R+ +++ +D L+GL N             SL   ++ +S++  D
Sbjct: 158 WALSFSYEYKRAEAVERLQKMASLDPLTGLNNRLLLDSIFDMLCESLPEQHQSVSVLILD 217

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D+FK+IND +GH VGDKV+  +S  +  V     +  RLGGEEF      S+ Q+A  +
Sbjct: 218 LDHFKRINDQYGHDVGDKVLVEVSRIINSVRRQNDWAFRLGGEEFCMLIPDSNLQQAGQI 277

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A  LRK +E   + +  G  ++++IS G++         S I   AD  LY AK  GRN+
Sbjct: 278 AERLRKAVEL--VTVIDGSELNLSISIGVSRWPEDGAHFSQIYKTADARLYQAKTLGRNK 335

Query: 255 VV 256
           V+
Sbjct: 336 VI 337


>gi|313498170|gb|ADR59536.1| Diguanylate cyclase [Pseudomonas putida BIRD-1]
          Length = 474

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 63/249 (25%), Positives = 116/249 (46%), Gaps = 18/249 (7%)

Query: 24  PHTFMIYFSIFFSIFIATVIFI---ANIFLFYIGLTPFYGLEYILVENLSLVIISITISL 80
           P   +++ +  +S F+ +++ +   + + +        + +        +L+   + I++
Sbjct: 217 PIAALLWCAWTYSPFLVSLLTLTAGSTLIVAVAQNLMHFSVPQSEPGVTTLMSARLGIAM 276

Query: 81  LLG--YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---------KL 129
           L+    +   + +       R++  + +D L+G+L  SAF     +  E          L
Sbjct: 277 LVLGPLVVACVSQANRSLMARLAHQATVDHLTGVLTRSAFTRRANALLESRQQHAQALPL 336

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID+FK IND  GH VGD+V+   +  L         + RLGGEEF     G + 
Sbjct: 337 TLMMLDIDHFKSINDAHGHAVGDQVLRQFASTLQDQLHNDELIARLGGEEFVVILPGLAP 396

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYV 246
           + A   A  LR+ I++  + + +   + IT+S G+A      P   +  ++  ADQALY 
Sbjct: 397 ERANFTAERLRRAIQDLHV-VQADQRLQITVSIGVAGCDADMPAPSLDELLASADQALYR 455

Query: 247 AKKSGRNRV 255
           AK  GRNRV
Sbjct: 456 AKARGRNRV 464


>gi|311279495|ref|YP_003941726.1| diguanylate cyclase [Enterobacter cloacae SCF1]
 gi|308748690|gb|ADO48442.1| diguanylate cyclase [Enterobacter cloacae SCF1]
          Length = 457

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 79/260 (30%), Positives = 124/260 (47%), Gaps = 16/260 (6%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSI-FFSIFIATVIFIANIFLFYIGLTPFYGLEYILV 66
            +++WL     +   +    + +FS  FF +F    IF   I L           +  + 
Sbjct: 201 LITMWLVTLIAMLIITRLRNIFWFSGCFFCVF---YIFTLTILLLSPVGESNNWYQARMF 257

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY- 125
           E ++ + +   I +LLG +  ++ K+    Y    Q S  D ++ L N S F  SL    
Sbjct: 258 ETIATLFL---IFVLLGDVF-TLYKDSNNKYQNSYQNSIRDPMTQLYNRSYFYDSLTQTI 313

Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 +  S++  D+D+FK+IND++GH  GDKVI F++  L           R+GGEEF
Sbjct: 314 ARVTPQQPASVIVCDLDHFKRINDSYGHLQGDKVIQFVASILQDSVRENDLAARIGGEEF 373

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGI-AERCHKEPISTIIY 238
           A   + +S +EA  +A  +R II       SSG     ITIS G+         +   + 
Sbjct: 374 ALLLVNTSSEEAYRVAERIRLIISEHDAQSSSGSFPEKITISMGVFTTTSAGLGVEVCVQ 433

Query: 239 RADQALYVAKKSGRNRVVCF 258
           RAD+A+Y AK++GRNRVV +
Sbjct: 434 RADEAMYQAKENGRNRVVTW 453


>gi|303240874|ref|ZP_07327386.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acetivibrio cellulolyticus CD2]
 gi|302591602|gb|EFL61338.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acetivibrio cellulolyticus CD2]
          Length = 852

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 12/205 (5%)

Query: 70  SLVIISITISLLLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------ 122
           +++ I   +  ++G +S    + E+  S  RI  +   D L+GL N + F   L      
Sbjct: 392 AILPIRNELGEIIGTVSAIKDITEIKRSEKRIYDMEYYDSLTGLPNKALFSDRLNMALAN 451

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                 K +I+  D+D FK IND  GH  GD+++  + +++         V R  G+EF 
Sbjct: 452 ARRSGLKCAIIILDLDNFKTINDTLGHACGDEILKQMGEKIKGYIREVDTVARFAGDEFI 511

Query: 182 AAALGSSEQEAAILANDLRKIIENSQ-INISSGPSIHITISAGIAERC-HKEPISTIIYR 239
                        +   + +IIE  Q   I  G   ++T S GIA      E   T+I  
Sbjct: 512 ILQPNVRL--LTDITRAVERIIEKFQKPWILEGREYYVTASIGIAVYPNDGEDEQTLIRN 569

Query: 240 ADQALYVAKKSGRNRVVCFSDIENN 264
           AD A+Y AK++G+N    F +  N 
Sbjct: 570 ADIAMYKAKETGKNSYEMFMESMNK 594


>gi|121998088|ref|YP_001002875.1| diguanylate cyclase [Halorhodospira halophila SL1]
 gi|121589493|gb|ABM62073.1| diguanylate cyclase [Halorhodospira halophila SL1]
          Length = 559

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 89/186 (47%), Gaps = 11/186 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVF 133
           LL +     L       + + Q ++ D L+GLLN S     + +         + L+++ 
Sbjct: 376 LLAWQINRGLARSRREIHALDQQAQHDRLTGLLNRSGLDQQIATQVAQHQETGKPLAMLL 435

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D+FK++ND  GH VGDK++  L+DQL         VGR GGEEF      +    A 
Sbjct: 436 IDLDHFKRVNDEHGHAVGDKILRHLADQLRAGVREADIVGRWGGEEFVILLPATGLDGAQ 495

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             A+ LR+ + +  +    G    +T S G++    ++    +  RAD ALY AK  GRN
Sbjct: 496 QSADKLRRALADHPVLRQHG----LTASFGVSVLASEDSDRDLFERADCALYAAKHQGRN 551

Query: 254 RVVCFS 259
           RV   S
Sbjct: 552 RVSIVS 557


>gi|119512832|ref|ZP_01631899.1| Putative diguanylate cyclase (GGDEF domain) [Nodularia spumigena
           CCY9414]
 gi|119462505|gb|EAW43475.1| Putative diguanylate cyclase (GGDEF domain) [Nodularia spumigena
           CCY9414]
          Length = 314

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 11/183 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDY 138
              + K+L  +   + +L+ ID L+ + N   F          +      +S++  D+D+
Sbjct: 131 QSQLQKQLESANQELQKLATIDQLTQIANRRRFEEYLVPEWQRMAREQLPISLILGDVDF 190

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           FK  ND +GH +GD+ +  ++  +   +  +   V R GGEEF      ++ + A ILA+
Sbjct: 191 FKLYNDTYGHQLGDRCLQAVAKSIQNTIKRSTDLVARYGGEEFTVILPNTNMEGAIILAD 250

Query: 198 DLRKIIENSQINISSGP-SIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNR 254
            +  ++    I  S+ P S  +TISAG+A            II  AD+ALY AK +GR+R
Sbjct: 251 AICTVVRKLAIPHSTSPVSSFVTISAGVATLIPKPGSDYQQIIALADKALYQAKTAGRDR 310

Query: 255 VVC 257
           +  
Sbjct: 311 LKF 313


>gi|313500935|gb|ADR62301.1| Response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida BIRD-1]
          Length = 708

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 51/210 (24%), Positives = 100/210 (47%), Gaps = 16/210 (7%)

Query: 71  LVIISITISLLLGYISGSILKELFIS-----YNRISQLSRIDCLSGLLNHSAFISSLG-- 123
           LV ++++ + L       ++  L +S     + ++   +  D L+GLLN   F  +    
Sbjct: 240 LVPVALSCAPLPADQQAMVVTVLDMSVVRNLHQQLEYQAITDPLTGLLNRRGFYQAAEGA 299

Query: 124 -----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                  ++  ++++ D+D FK+IND+ GH  GD+V+ ++++QL    G+   + R+GG+
Sbjct: 300 LLRNERSDKAQALMYMDLDGFKRINDSLGHDAGDRVLRWVAEQLKDCLGSEALLARMGGD 359

Query: 179 EFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTI 236
           EF A        ++A   A  L + +  S  +   G  + + +S GIA        +  +
Sbjct: 360 EFTALFDSLPYPEQAGRYAERLLERVSIS--HEVDGLDVCLGVSIGIATYPDCGANVEGL 417

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           +  AD A+Y AK++GR +   +    N   
Sbjct: 418 LRSADAAMYAAKQAGRQQYRFYDQELNGRA 447


>gi|291569840|dbj|BAI92112.1| PleD-like protein [Arthrospira platensis NIES-39]
          Length = 1063

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 87/179 (48%), Gaps = 11/179 (6%)

Query: 92   ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144
            +    Y ++ +L+ +D L+ + N   F + L +           +S++  D+D+FK  ND
Sbjct: 883  QQAELYQQLERLATLDGLTQVPNRRQFDTYLMTEWRRCIRECTPISLILCDVDFFKHYND 942

Query: 145  NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KI 202
             +GH  GD+ +  ++  L   +      V R GGEEFA     +  +    +A+ +R +I
Sbjct: 943  TYGHQEGDRCLQEVAQALARSIRRPGDLVARYGGEEFAIILPNTDAEGMCNVADTIREQI 1002

Query: 203  IENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCFS 259
            ++  +I+ +S  S +I++S G         I    +I  AD ALY AK  GR+R V  +
Sbjct: 1003 LQLQRIHETSPISEYISVSMGGVSVLPNSNIQLEHLIAMADTALYQAKAQGRDRFVLHT 1061


>gi|316933598|ref|YP_004108580.1| PAS/PAC GAF sensor -containing diguanylate
           cyclase/phosphodiesterase [Rhodopseudomonas palustris
           DX-1]
 gi|315601312|gb|ADU43847.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhodopseudomonas palustris DX-1]
          Length = 872

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 9/187 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFK 140
           G++  E   S  +I++L+  D L+GL N +     +G           +++ F D+D FK
Sbjct: 401 GALAIERMESRAQIARLAYFDMLTGLPNRARLRDLIGEATAACPQGRSVALAFLDVDNFK 460

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH  GD+ +   + +L         VGRLGG+EF          E   +   + 
Sbjct: 461 DINDTLGHAAGDEFLVEFARRLRDQVQPGDVVGRLGGDEFVVVLPNREPAEIEPVVARIS 520

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +      + +   + ++ S G++        I T+I +AD A+Y AK+SGR+    F+
Sbjct: 521 DAL-MLPFALCNSQ-VPMSASIGVSLYPDNATDIDTLINQADTAMYRAKRSGRSTYRLFN 578

Query: 260 DIENNTC 266
              +   
Sbjct: 579 CDMHGAA 585


>gi|237748829|ref|ZP_04579309.1| sensory box sensor/GGDEF/EAL domain-containing protein [Oxalobacter
           formigenes OXCC13]
 gi|229380191|gb|EEO30282.1| sensory box sensor/GGDEF/EAL domain-containing protein [Oxalobacter
           formigenes OXCC13]
          Length = 1076

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 82/186 (44%), Gaps = 13/186 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
            E   + + I + +  D L+ L N    +  +           +KL+++F D+D FK IN
Sbjct: 634 TEKKEAEDMIWRQANFDFLTNLPNRRMLMDRMKQELVKVNQSGKKLALLFLDLDNFKDIN 693

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKI 202
           D  GH  GD ++  ++ +L         V RLGG+EFA      S       +A+ + + 
Sbjct: 694 DTLGHDAGDHLLLDVAKRLKDCVREFDTVSRLGGDEFAIILTELSDLPTMEKIAHSILRS 753

Query: 203 IENSQINISSGPSI-HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +         G  I ++T S GI         I T++  ADQALY AK +GRNR+  F+ 
Sbjct: 754 LAQ---PYQLGSEIAYVTGSIGITVYPDDGTDIDTLMRNADQALYAAKLAGRNRMSYFTA 810

Query: 261 IENNTC 266
                 
Sbjct: 811 SMQAAA 816


>gi|297566221|ref|YP_003685193.1| diguanylate cyclase [Meiothermus silvanus DSM 9946]
 gi|296850670|gb|ADH63685.1| diguanylate cyclase [Meiothermus silvanus DSM 9946]
          Length = 247

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 58/192 (30%), Positives = 95/192 (49%), Gaps = 9/192 (4%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------ 125
            I+ + I+ +  Y    ++ +L  +Y+ + +LS  D L+   N   FI            
Sbjct: 50  FIVPLIIAPVFSYFQLRLIAQLEQAYSELHRLSITDYLTNTHNRRYFIQQAQQMFAMAQR 109

Query: 126 -NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
             + LS++ FD D FK+IND  GH VGD+V+A +++           V R GGEEFA   
Sbjct: 110 DLKPLSVLLFDADDFKKINDTHGHLVGDQVLARIAEVTRAHVRKGDLVARYGGEEFAVLL 169

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQA 243
             +   EA  +A  + + I N+ +  +  P I  T+S G +A       +  ++ +AD A
Sbjct: 170 PNTQIPEALEVAMRIHQEILNNPVTYAGSP-IVATVSMGVVALELSHRTLDELLAKADGA 228

Query: 244 LYVAKKSGRNRV 255
           LY AK +G+NR+
Sbjct: 229 LYRAKNTGKNRI 240


>gi|227112497|ref|ZP_03826153.1| hypothetical protein PcarbP_06012 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 384

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/179 (34%), Positives = 88/179 (49%), Gaps = 9/179 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136
           Y    +L  LF    ++   S  D L+ LLN           IS     N  LSI   DI
Sbjct: 202 YKINMLLGSLFDEVQKLE--SGKDTLTLLLNRRFLPTILRHEISLAMHSNTSLSIAMIDI 259

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK +ND +GH  GD ++  +++ L        +V R GGEEF    + + +  A  + 
Sbjct: 260 DHFKTVNDTYGHAAGDSILKRIAEVLYGSTRNSDYVFRYGGEEFMIVLIETPKVAAHTII 319

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             LRK I++  I + +G S+ +TISAGIA          +I  AD ALY AK +GRNR+
Sbjct: 320 ERLRKKIQDHPIYLQNGESVTMTISAGIAVYSGHPDYECLIKAADDALYQAKANGRNRI 378


>gi|330957687|gb|EGH57947.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 682

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 66/266 (24%), Positives = 114/266 (42%), Gaps = 41/266 (15%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE-------------NLSLVIISITIS 79
           +F  +F   V  +    L  + L     L  ++ E              L L I +IT+ 
Sbjct: 100 MFHQMFRYGVSLLLGAGLLTMHLMGMRALRLVMPEGAELLTPSTGNSQQLGLTIAAITLL 159

Query: 80  LLLGYISGS------------------ILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           ++ G IS +                  +L +L  +   + Q++  D L+ L+N   F   
Sbjct: 160 IIAGSISAAMADKKLQSKEHDLQRVNALLSQLDQARVSLQQVAHYDPLTNLINRRGFNQI 219

Query: 122 LGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
                         L+++F DID+FK+IND+ GH  GD+++  +++++         V R
Sbjct: 220 FAEKLLEHTLGKGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDVVSR 279

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
            GG+EF         +EA  LA+ + + ++ +     +G  + +T S GIA         
Sbjct: 280 FGGDEFCILLSIPDYEEARHLAHRVMQKMKETI--ALAGRRMVMTTSIGIAVFPRDGITC 337

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
             ++  AD ALY +K +GRNRV  FS
Sbjct: 338 DELLKHADLALYQSKGAGRNRVNFFS 363


>gi|253996222|ref|YP_003048286.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera mobilis JLW8]
 gi|253982901|gb|ACT47759.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera mobilis JLW8]
          Length = 699

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 11/183 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           +        ++   +  D L+GL N +     L         Y  K+++ F D+D FK I
Sbjct: 253 ITARKNYEEKLEYQAMHDSLTGLPNRNMLNDRLQLCINFANRYKNKMAVAFLDLDQFKLI 312

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+ GH VGD+++  ++ +L         V RLGG+EF        +     +   +++I
Sbjct: 313 NDSMGHEVGDQLLVIMAKRLSSAVREIDTVVRLGGDEFVIVLTNIDDTNDIFM--SMQRI 370

Query: 203 IENSQINIS-SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +E   + ++ +     +T S G++         + ++  AD A+Y AKK+GRN    ++ 
Sbjct: 371 LEAVAVPLTINNMDYLVTCSIGVSIYPDDGLDANLLLRNADTAMYKAKKAGRNNFQIYTQ 430

Query: 261 IEN 263
             N
Sbjct: 431 ALN 433


>gi|254457121|ref|ZP_05070549.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Campylobacterales bacterium GD 1]
 gi|207085913|gb|EDZ63197.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Campylobacterales bacterium GD 1]
          Length = 648

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 96/182 (52%), Gaps = 12/182 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + + E      R+  ++  D L+ L N   F   +           +K+++ + D+D FK
Sbjct: 461 TDITEQKAQQERLEHMAHYDMLTNLPNRVLFSDRMHQAIAQTARREQKIAVAYIDLDGFK 520

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH VGDK++  L++++  +      + R+GG+EF A  +  S++E+ I  + L+
Sbjct: 521 EVNDRYGHDVGDKLLILLAERMSNLLREGDSISRVGGDEFVALLIDISDKESVI--SFLK 578

Query: 201 KIIE-NSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
           +++E  SQ       S++++ S G+     KE   +  II +ADQA+Y AK SG+N    
Sbjct: 579 RLLEVTSQAVEIDDLSLNVSASIGVTFYPQKELLDVDQIIRQADQAMYRAKLSGKNCYNI 638

Query: 258 FS 259
           F 
Sbjct: 639 FD 640


>gi|196036155|ref|ZP_03103555.1| GGDEF domain protein [Bacillus cereus W]
 gi|196041011|ref|ZP_03108308.1| diguanylate cyclase (GGDEF) domain protein [Bacillus cereus
           NVH0597-99]
 gi|218906595|ref|YP_002454429.1| GGDEF domain protein [Bacillus cereus AH820]
 gi|228949140|ref|ZP_04111410.1| GGDEF domain protein [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|229094525|ref|ZP_04225594.1| GGDEF domain protein [Bacillus cereus Rock3-42]
 gi|301056881|ref|YP_003795092.1| hypothetical protein BACI_c54090 [Bacillus anthracis CI]
 gi|195991322|gb|EDX55290.1| GGDEF domain protein [Bacillus cereus W]
 gi|196028179|gb|EDX66789.1| diguanylate cyclase (GGDEF) domain protein [Bacillus cereus
           NVH0597-99]
 gi|218537650|gb|ACK90048.1| GGDEF domain protein [Bacillus cereus AH820]
 gi|228688909|gb|EEL42739.1| GGDEF domain protein [Bacillus cereus Rock3-42]
 gi|228810581|gb|EEM56932.1| GGDEF domain protein [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|300379050|gb|ADK07954.1| conserved hypothetical protein, GGDEF domain in C-terminal region
           [Bacillus cereus biovar anthracis str. CI]
          Length = 351

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 108/227 (47%), Gaps = 12/227 (5%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           S+F   + F  N++  +I   P   L   +   ++L ++  +++  + +IS + + +   
Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLSMLFKDM-SIVALYLVCSSVAAYITFISANYVLQSNE 182

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
            + ++ Q + ID L+GL N   F   +  +       N  L ++  DID+FK +ND +GH
Sbjct: 183 LFQKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSVNDTYGH 242

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           P GD+V+  +   L  V   P    R GGEEFA             +   +R  +E    
Sbjct: 243 PAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAAVEKHSF 302

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  G  I IT+S GI+    ++     I  AD ALY +K++GRN+V
Sbjct: 303 QLLDGTKIKITVSVGISVY--EQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|332528397|ref|ZP_08404391.1| sensory box/GGDEF family protein [Hylemonella gracilis ATCC 19624]
 gi|332042160|gb|EGI78492.1| sensory box/GGDEF family protein [Hylemonella gracilis ATCC 19624]
          Length = 805

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 13/181 (7%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDN 145
              +  ++  L+  D L+GL N             +       L+++F D+D FK IND+
Sbjct: 364 RKKAERQMEYLAHHDTLTGLPNRVLAQDRFAQAKSRADRETVKLALLFLDLDGFKTINDS 423

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS--EQEAAILANDLRKII 203
            GH VGD ++  ++ +L         + RLGG+EF       S  +  A +L   L ++ 
Sbjct: 424 LGHGVGDALLQQIAVRLGGCVRDSDTISRLGGDEFLVLLSDISSADDTAPVLLKVLERLH 483

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           E  ++       +  ++S G++          T++ +AD A+Y AK +GRN    F +  
Sbjct: 484 EPVRV---ENRELSTSVSIGVSIYPDDGRDFDTLLKKADMAMYRAKDAGRNTYRYFDEQM 540

Query: 263 N 263
           N
Sbjct: 541 N 541


>gi|229186289|ref|ZP_04313455.1| Sensory box/GGDEF family protein [Bacillus cereus BGSC 6E1]
 gi|228597189|gb|EEK54843.1| Sensory box/GGDEF family protein [Bacillus cereus BGSC 6E1]
          Length = 386

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          NE ++++ FDID FK +
Sbjct: 210 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAV 269

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 270 NDTYGHDFGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 329

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q +  S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 330 IETKQFSGIS----KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCIY 381


>gi|213968072|ref|ZP_03396217.1| CHASE domain/sensory box-containing nucleotide cyclase [Pseudomonas
           syringae pv. tomato T1]
 gi|213927052|gb|EEB60602.1| CHASE domain/sensory box-containing nucleotide cyclase [Pseudomonas
           syringae pv. tomato T1]
          Length = 795

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 88/175 (50%), Gaps = 10/175 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +L      +  LS  D L+G  N   F   +         +   LSI+  DID+FK
Sbjct: 619 SDITDLKRVEEELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSIIMLDIDHFK 678

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +A  LA  LR
Sbjct: 679 RINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVVCPGTRGGQAYQLALSLR 738

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + + N  I    G    +T S GIA     E I T++ RAD  +Y AK++GR+RV
Sbjct: 739 EGLRNQVI---EGVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQAGRDRV 790


>gi|241206173|ref|YP_002977269.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860063|gb|ACS57730.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 717

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 9/184 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFK 140
              + E      +++ L+  D L+GL N +AF   +         +  +++++ D+D+FK
Sbjct: 272 SQDVTEERAVEAKLAHLATRDPLTGLPNRAAFSEHINQRAVEATADSAIALLYIDVDHFK 331

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND+ GH  GD ++  +S++L+ + G    V RLGG+EFA        + A   A  L 
Sbjct: 332 HINDSKGHAAGDALLCQVSERLLQLAGEGDLVARLGGDEFAVVLELDEPERAGRFAQRLL 391

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + + ++      G   H+T S GIA    H      ++  AD ALY AK+SGR+    + 
Sbjct: 392 QTLSHA--FDLDGAREHVTCSVGIALAPDHAGDADVLMRHADLALYAAKESGRSIYRFYE 449

Query: 260 DIEN 263
               
Sbjct: 450 TEMR 453


>gi|126661089|ref|ZP_01732171.1| hypothetical protein CY0110_06459 [Cyanothece sp. CCY0110]
 gi|126617633|gb|EAZ88420.1| hypothetical protein CY0110_06459 [Cyanothece sp. CCY0110]
          Length = 837

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 87/184 (47%), Gaps = 12/184 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFK 140
            + E   +  ++   +  D L+ L N   FI  L    E+         +++F D+D FK
Sbjct: 393 DVTERKKAEEKLRHNALHDTLTKLPNRLLFIDRLNQSIERIKRHPTYSFAVLFIDLDRFK 452

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND+ GH +GD+V+  ++ +L     +   V R+GG+EF        S+ +A  +A  +
Sbjct: 453 LINDSLGHIIGDRVLIQIATKLTSCVRSLDTVARIGGDEFIILLNDLESKIKAIHIAERI 512

Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + ++   I      +I I+ S GIA    + E    II  AD A+Y AK+ G+ R + F
Sbjct: 513 LETLKLPII--IEQRNIVISASIGIAFNSQNNEEADDIIRNADLAMYKAKEQGKARYMIF 570

Query: 259 SDIE 262
             + 
Sbjct: 571 DSVM 574


>gi|89901384|ref|YP_523855.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
 gi|89346121|gb|ABD70324.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
          Length = 380

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 106/242 (43%), Gaps = 22/242 (9%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL---VIISITISLLLGYI 85
           I FS   ++ +   +F A +       +  + L     +  +L    I S   S+LL  I
Sbjct: 147 ITFSRGLAVGVLVFLFGAQVMRLVTSFSAPFPLNAEFFDTSTLQLTYITSFAFSVLLFSI 206

Query: 86  SGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDI 136
           S  ++    L I    +  L+  D L+  L                  +   ++++  D+
Sbjct: 207 SAVLMATDRLRI---ELEHLANHDSLTNALTRRHMDDACRSELERCRRHGHSMALLIMDL 263

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND +GH  GD+ +     ++  +   P  +GR GGEEF A    +S  EA  +A
Sbjct: 264 DHFKEINDIYGHQAGDQALINFVARVNALLRGPDQLGRFGGEEFVALLPETSLDEAIAVA 323

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +R           +G +   T+S G+   R   + + T++ RAD ALY AK +GRNRV
Sbjct: 324 ERIRGAC------TLAGQAPACTVSIGVTTNRKDNDSVDTLLARADAALYRAKAAGRNRV 377

Query: 256 VC 257
             
Sbjct: 378 EV 379


>gi|114564780|ref|YP_752294.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114336073|gb|ABI73455.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 388

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 76/242 (31%), Positives = 117/242 (48%), Gaps = 17/242 (7%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLE-YILVENLSLVIISITISLLLGYISG 87
           I  S+   IF   ++  A+I L          ++ Y +V   +L    + +S+ + Y+  
Sbjct: 152 IGASLMHFIFAMCILVAASIALSQGKEMDVELIKLYAIVNFTALPAAYVGMSVFVIYMLA 211

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFK 140
           S L E       +  L+  D L+   N   F S        L    +   ++++DID FK
Sbjct: 212 SDLAE------EMKLLAMTDPLTDCFNRRGFYSHAKQKLLELQKQPQHACLIYWDIDKFK 265

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND FGH  GD+V+  ++  +         +GR+GGEEF      S+ QEA  +A  LR
Sbjct: 266 AINDQFGHAGGDQVLISITQLIKQHIKKDDLIGRMGGEEFVILIERSNYQEAINVAERLR 325

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            +I  + I +  G  I +T S G+ E  +++ PI   I  AD ALY AK SGRN+VV FS
Sbjct: 326 AMINQTPI-VYCGQQISVTASFGVVELSNQDIPIEQAIDLADSALYQAKSSGRNKVV-FS 383

Query: 260 DI 261
           ++
Sbjct: 384 EL 385


>gi|226944371|ref|YP_002799444.1| GGDEF protein [Azotobacter vinelandii DJ]
 gi|226719298|gb|ACO78469.1| GGDEF protein [Azotobacter vinelandii DJ]
          Length = 318

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 89/176 (50%), Gaps = 9/176 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
            I +EL  + ++   L+ +D L+GL N  AF                 ++++ FD+D+FK
Sbjct: 139 RIEEELAAAKHQAEALAHVDELTGLNNRRAFFQLGLQAFRQAARAAGPIAVIMFDLDHFK 198

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           QIND  GH VGDKV+  +++ +          GRLGGEEFA     ++  EA   A  LR
Sbjct: 199 QINDAHGHLVGDKVLVAVANGMRSQIREADIAGRLGGEEFALILPETTLSEALTAAERLR 258

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
            +I  +++   S   I  T S G+A        +  ++  AD  LY AK++GRNRV
Sbjct: 259 GVIAATRLAHGSIH-IQCTSSFGVAVCEDGSLDLEHMLSLADAGLYKAKRNGRNRV 313


>gi|320324625|gb|EFW80702.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. glycinea str. B076]
          Length = 586

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 110/275 (40%), Gaps = 19/275 (6%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIF----IATVIFIANIFLFYI--GLTPFYGLE 62
            ++WL     L +       +   +  S      +A   F    F   +  GL+      
Sbjct: 42  FALWLAARPLLSAAQIGLGGLLLGLGISAMHYTGMAAATFADGSFCGALPDGLSSNGLDR 101

Query: 63  YILVENLSLVIISITISLLLGYISGSIL---KELFISYNRISQLSRIDCLSGLLNHSAFI 119
            +LV +LS++ I++   +L  ++          L  +   ++ L+  D L+GL N     
Sbjct: 102 IVLVASLSILGIALFSCILDSHLETRTAVPANSLTEANQELTHLALHDNLTGLPNRVLLT 161

Query: 120 SSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             +    +K        +++F D+D FK +ND FGH  GD ++  ++ +L         +
Sbjct: 162 DRIEQAMKKVSESGGCFALMFMDLDGFKPVNDAFGHHTGDLLLRQVALRLRNNLHRHDTL 221

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
            R+GG+EF         Q+A  +A   R++ E           + I++S GI     +  
Sbjct: 222 ARIGGDEFVLLVELHDPQDALAVAT--RQVNEIGNPFTIGEHQLQISLSIGICMYPGNGN 279

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
               ++  AD A+Y  K +G+N    F    N+  
Sbjct: 280 TQHELLINADAAMYHTKAAGKNGYSFFDASMNSNA 314


>gi|306814221|ref|ZP_07448387.1| putative diguanylate cyclase [Escherichia coli NC101]
 gi|305852380|gb|EFM52831.1| putative diguanylate cyclase [Escherichia coli NC101]
          Length = 558

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LLL  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTSMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCHTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G++  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 536 LADRRLYLAKQAGRNRV-FASD 556


>gi|260777430|ref|ZP_05886324.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607096|gb|EEX33370.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 338

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 59/172 (34%), Positives = 88/172 (51%), Gaps = 5/172 (2%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNF 146
           ++ L      + Q +  D L+ L N  +F + L       +K+ ++  DID+FK  ND +
Sbjct: 165 IQRLKTQLAEVQQDALFDGLTSLYNRRSFDNDLDTLCRSEQKICLILADIDHFKSYNDTY 224

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD VI  ++ +L +     +   R GGEEFA        + A   A  LR+ +E  
Sbjct: 225 GHLFGDAVIKGIAKRLQISSRDGIHAYRFGGEEFALIMPNKQLRIARQFAESLRRSVEKL 284

Query: 207 QI-NISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            I +  SG  +  IT S G+AE    E  ++II RAD+ LY AK+ GRNRV+
Sbjct: 285 SIKDRRSGKQVGNITASFGVAELQPGEMPNSIIERADKLLYEAKQLGRNRVM 336


>gi|213855261|ref|ZP_03383501.1| hypothetical protein SentesT_14822 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 274

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 100/203 (49%), Gaps = 11/203 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+    T  LL+ + +   ++K +F+  N     +  D L+ L N  A          
Sbjct: 66  LTLLWGLFTAMLLISWGVIRHMVKNMFVLQNSPQWQAWHDPLTRLYNRGALFEKASRLAK 125

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 +  S++  D+DYFK +ND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 126 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 185

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+++ +A  +A  +R+ I + +I ++   ++ I+ S GI  AE         +  
Sbjct: 186 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 245

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
            AD+ LY AK+SGRNR+ C SD 
Sbjct: 246 LADKRLYYAKQSGRNRI-CASDA 267


>gi|162419032|ref|YP_001605417.1| diguanylate cyclase [Yersinia pestis Angola]
 gi|162351847|gb|ABX85795.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis Angola]
          Length = 384

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 118/256 (46%), Gaps = 22/256 (8%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLLLGYI 85
           +  S+F   FI+T+    N   F +   P   +  IL++   N+  +I +I + L+   +
Sbjct: 126 LLLSLFTIFFISTIALSDNFLAFCLHTAP-SAITVILLDDFHNIFRIIFTIMLPLIGFSL 184

Query: 86  SGSILKE-----------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LS 130
              +L+            L     + S LS ID L+ L N     S L +   +      
Sbjct: 185 HHLMLRRTDNFTRKLVDHLSNEREKFSDLSMIDPLTSLYNRRGLESKLETLLSQSPGNHY 244

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  DID+FK  NDN+GH +GD+ +  +S  +     +   V R GGEEF       SE+
Sbjct: 245 VLLLDIDHFKAYNDNYGHTMGDQALVRISAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEE 304

Query: 191 EAAILANDLRKIIENSQINISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAK 248
            A+ LA  +R+ +    I       +   +T+SAGI+     +  +++   AD+ALY AK
Sbjct: 305 YASQLAERVRQRVLGLDIPHVFNHKVSTTVTLSAGISPLQAYDLAASL-KAADEALYRAK 363

Query: 249 KSGRNRVVCFSDIENN 264
           ++GRN +    D  +N
Sbjct: 364 RNGRNNIEFAKDELSN 379


>gi|331645556|ref|ZP_08346660.1| protein AdrA [Escherichia coli M605]
 gi|330910177|gb|EGH38687.1| protein YaiC [Escherichia coli AA86]
 gi|331045718|gb|EGI17844.1| protein AdrA [Escherichia coli M605]
          Length = 371

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTDITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|254706221|ref|ZP_05168049.1| GAF/GGDEF domain-containing protein [Brucella pinnipedialis
           M163/99/10]
          Length = 322

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS--- 130
           L++G I+     I  +   +  R++  +  D L+ L N       ++   S  + LS   
Sbjct: 128 LMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGKLLTQKKSARDGLSRDG 187

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSS 188
            ++  D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF      G+S
Sbjct: 188 FLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTS 247

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++  I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK
Sbjct: 248 KEQTDIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAK 306

Query: 249 KSGRNRVVCFSD 260
             G+NR   F +
Sbjct: 307 SKGKNRFEYFEE 318


>gi|23014416|ref|ZP_00054233.1| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 317

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 93/212 (43%), Gaps = 19/212 (8%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI-------SQLSRIDCLS 110
           +Y L   L+      ++  +I++ +  +  +   EL  +Y  +        ++S  D L+
Sbjct: 109 WYQLSETLINWFDGRLVKHSIAVDISALKEA-ENELAEAYAELALKSVALEKVSITDALT 167

Query: 111 GLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           GL N                 Y E +S++  D+D+FK IND  GH  GD+V+  ++D L 
Sbjct: 168 GLFNRRRLDEAFAHELDRAQRYAEPVSLIISDVDHFKSINDVHGHQTGDEVLQSIADLLR 227

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   VGR GGEEF      +  + A  LA  LR  I  +    +       T S G
Sbjct: 228 NGVRALDVVGRWGGEEFLIICPNTDLEGAVALAEKLRLTIATAVFTGTGA----CTASFG 283

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +A+    E     + RAD ALY AK  GRNRV
Sbjct: 284 VAQYAESESFKDTVARADTALYRAKVEGRNRV 315


>gi|323977026|gb|EGB72113.1| GGDEF domain-containing protein [Escherichia coli TW10509]
          Length = 410

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 238 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-ITQDYSLLLIDTDRFK 296

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 297 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 356

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 357 --VSVTKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 407


>gi|119896789|ref|YP_932002.1| GGDEF/PAS/PAC-domain-containing protein [Azoarcus sp. BH72]
 gi|119669202|emb|CAL93115.1| GGDEF/PAS/PAC-domain containing protein [Azoarcus sp. BH72]
          Length = 901

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 73/269 (27%), Positives = 112/269 (41%), Gaps = 13/269 (4%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG--LE 62
               L   L  ++   +      +   +     F     F+A I        P +G  LE
Sbjct: 629 ANQMLCSLLGIDERASALVGRPSVELVADAAPNFTDAAAFVARIRDLRAAARPVHGEELE 688

Query: 63  YILVENLSLVIISITIS-LLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
            +    L    + +     LLG++     + E       + +L+ +D L+G  N  AF+ 
Sbjct: 689 TLGGRWLERDFLPVRSGDTLLGFLRLYRDVTERKHHEQALQRLATLDPLTGTWNRRAFLE 748

Query: 121 SLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                           S+V  D+D+FK++ND +GH  GD V+      L         +G
Sbjct: 749 RAEHERLRYLRSEHPASLVMLDLDHFKRVNDTWGHAAGDAVLCHFVRVLQQRLRATDLLG 808

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEP 232
           RLGGEEFA   + ++ + AA L   LR  I    + +    +I IT+SAGIA      + 
Sbjct: 809 RLGGEEFALLLVDTTPEGAAELTERLRAAIAEHPLPLGD-RTISITVSAGIAPFVQDDQN 867

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +   + RAD ALY AK  GRN+VV   D 
Sbjct: 868 VEAALARADAALYRAKARGRNQVVLADDE 896


>gi|82544203|ref|YP_408150.1| hypothetical protein SBO_1720 [Shigella boydii Sb227]
 gi|193062480|ref|ZP_03043574.1| sensory box-containing diguanylate cyclase [Escherichia coli E22]
 gi|209918586|ref|YP_002292670.1| hypothetical protein ECSE_1395 [Escherichia coli SE11]
 gi|300818938|ref|ZP_07099142.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
 gi|300904993|ref|ZP_07122811.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|301305843|ref|ZP_07211928.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|306813634|ref|ZP_07447815.1| hypothetical protein ECNC101_17017 [Escherichia coli NC101]
 gi|81245614|gb|ABB66322.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|192931602|gb|EDV84202.1| sensory box-containing diguanylate cyclase [Escherichia coli E22]
 gi|209911845|dbj|BAG76919.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|300403142|gb|EFJ86680.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|300528399|gb|EFK49461.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
 gi|300838933|gb|EFK66693.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|305852908|gb|EFM53353.1| hypothetical protein ECNC101_17017 [Escherichia coli NC101]
 gi|315254383|gb|EFU34351.1| diguanylate cyclase domain protein [Escherichia coli MS 85-1]
 gi|320199382|gb|EFW73973.1| hypothetical protein ECoL_03482 [Escherichia coli EC4100B]
 gi|323153513|gb|EFZ39766.1| sensory box protein [Escherichia coli EPECa14]
 gi|323179695|gb|EFZ65256.1| hypothetical protein ECOK1180_1440 [Escherichia coli 1180]
 gi|323187575|gb|EFZ72884.1| hypothetical protein ECRN5871_4400 [Escherichia coli RN587/1]
 gi|324021222|gb|EGB90441.1| diguanylate cyclase domain protein [Escherichia coli MS 117-3]
 gi|332094922|gb|EGI99962.1| hypothetical protein SB359474_1973 [Shigella boydii 3594-74]
          Length = 430

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 258 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|27377512|ref|NP_769041.1| hypothetical protein blr2401 [Bradyrhizobium japonicum USDA 110]
 gi|27350656|dbj|BAC47666.1| blr2401 [Bradyrhizobium japonicum USDA 110]
          Length = 634

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 13/190 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYF 139
              + E      R+  L+  D L+GL N   F   L     +       L+++  D+D+F
Sbjct: 437 SRDITEQKTLETRLETLATEDSLTGLANRRCFDDRLNDEWARAYRDRSSLALLMIDVDHF 496

Query: 140 KQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           K  ND +GHP GD  +  ++  L   +        R GGEEFA     +     A +   
Sbjct: 497 KAYNDEYGHPAGDACLRVVAKILAAEMHRAGDLAARYGGEEFAMLLPNTDAAGCARIGER 556

Query: 199 LRKIIENSQINISSGP-SIHITISAGIAERCHK----EPISTIIYRADQALYVAKKSGRN 253
           +R+ I  + +  +S P S  +T+S G A            ++++  AD+ALY AK  GR+
Sbjct: 557 IREAIHQAGLVHASSPISASVTVSLGGATCRPSFERTAGSASLVEAADRALYAAKDMGRD 616

Query: 254 RVVCFSDIEN 263
           R++   ++ N
Sbjct: 617 RLMMSGEVMN 626


>gi|289208678|ref|YP_003460744.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
 gi|288944309|gb|ADC72008.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
          Length = 944

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 49/198 (24%), Positives = 87/198 (43%), Gaps = 12/198 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           ++  + +   + +   +   I +L+  D L+GL N +     L              +++
Sbjct: 478 IMATFGTMMDISDRKEAEEEIRRLAFFDGLTGLPNRTLLHDRLGQALANTARTRHHGAVL 537

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQ 190
           F D+D FK IND  GH VGD ++  ++ ++         + RLGG+EF      L     
Sbjct: 538 FIDLDNFKDINDTLGHAVGDDLLCQVARRMENSVREADTLARLGGDEFVIILNDLHPDPA 597

Query: 191 EAAILANDL-RKIIENSQINIS-SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVA 247
            AA  A  + RK+I   +     +G + H+T S G      +   +  ++ +AD A+Y A
Sbjct: 598 RAATEAEAVGRKLINLLREPFQLAGQNRHVTPSIGATLFSGRSLGVEEVLKQADLAMYRA 657

Query: 248 KKSGRNRVVCFSDIENNT 265
           K +GRN V  +    +  
Sbjct: 658 KNAGRNTVRFYDPELHRA 675


>gi|153006978|ref|YP_001381303.1| diguanylate cyclase [Anaeromyxobacter sp. Fw109-5]
 gi|152030551|gb|ABS28319.1| diguanylate cyclase [Anaeromyxobacter sp. Fw109-5]
          Length = 312

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 13/176 (7%)

Query: 92  ELFISYN-RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           EL   +  +I++ +  D L+GL N       L         +  +LS++  D+D+FK +N
Sbjct: 124 ELEARWQMKIAEGALQDPLTGLFNRRHLEERLASELAAAQRHGRELSLLLVDVDFFKAVN 183

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+ +  ++  L         + R GGEEF   A  +  Q A  LA  +R+ +
Sbjct: 184 DRHGHLAGDEALKMVAFVLRGAIRKEDVLARYGGEEFIVIARETGLQGARALAERIRRAV 243

Query: 204 ENSQ-----INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           E S+      ++    SI +T+S G+AE         ++  AD+ALY+AK++GRNR
Sbjct: 244 ERSRCAWHGHDLGLTVSIGVTVSIGLAEYVPGRSDRELLETADRALYLAKQAGRNR 299


>gi|75676900|ref|YP_319321.1| diguanylate cyclase/phophodiesterase [Nitrobacter winogradskyi
           Nb-255]
 gi|74421770|gb|ABA05969.1| diguanylate cyclase/phosphodiesterase [Nitrobacter winogradskyi
           Nb-255]
          Length = 778

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/189 (29%), Positives = 83/189 (43%), Gaps = 10/189 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDID 137
           I    + E   +  +I+ L+R D L+ L N  +F   +      L       +++F D+D
Sbjct: 322 ILVEDITERRKAEAKINHLARFDSLTELPNRLSFRDEIERLLASLNGESRLSALLFIDLD 381

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILA 196
            FKQIND  GHP GD+++  ++D+L  +     FV R GG+EF        S +EA+ LA
Sbjct: 382 QFKQINDTLGHPCGDRLLCMVADRLRGMLRPEDFVARFGGDEFVVFQQNIRSPEEASALA 441

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             + + +            + I  S GIA          ++  AD ALY AK  GR    
Sbjct: 442 RRIVERLAER--YEVDRHLVEIGASIGIALTSPGITADNLLKHADMALYRAKADGRGTFC 499

Query: 257 CFSDIENNT 265
            F      T
Sbjct: 500 FFRGEMAET 508


>gi|83309828|ref|YP_420092.1| signal transduction protein [Magnetospirillum magneticum AMB-1]
 gi|82944669|dbj|BAE49533.1| Predicted signal transduction protein [Magnetospirillum magneticum
           AMB-1]
          Length = 679

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 87/192 (45%), Gaps = 9/192 (4%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFF 134
           L      +L+ +    +R+  LS  D L+ L N   F             +     +   
Sbjct: 244 LSDYFNKLLRTVEEYQHRLEDLSIRDPLTRLYNRRKFDEFLDHEIDRAQRHGHPFCVAQI 303

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND FGHP+GD V+  L+  L         V R+G +EFA     ++ +E   
Sbjct: 304 DLDDFKNINDTFGHPIGDLVLKELASVLYREVRRTDVVARVGADEFAVLLPETTMEEGVA 363

Query: 195 LANDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRN 253
            A  LR+ + + Q+ +  G  + IT S G +    + +    +   AD A+Y AK+SG+N
Sbjct: 364 AAEKLRQAVADCQLGLPVG-GVRITASIGLVGYPDNADDAQKLAIAADVAIYKAKRSGKN 422

Query: 254 RVVCFSDIENNT 265
           +V    + E+ T
Sbjct: 423 QVAVIGEGEDAT 434


>gi|37679909|ref|NP_934518.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37198655|dbj|BAC94489.1| GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 320

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 89/178 (50%), Gaps = 9/178 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQIN 143
             L  + + +S++SR D L+GL N + +  SL     ++       S+V FDID+FK++N
Sbjct: 144 THLKETNHHLSEISRRDGLTGLFNRAFWEQSLKEEFSRMQFLDTPSSLVIFDIDHFKKVN 203

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD+VI   +  L          GR GGEEF      +S  +A   +  LRK I
Sbjct: 204 DTYGHHAGDEVIRRTASLLKKTARNSDLCGRFGGEEFTVLLPHTSADQARYFSERLRKRI 263

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           E  +I      +I+ TIS G+ E   K    +  +  AD ALY +K+ GRN+     +
Sbjct: 264 EQ-EIVCVEKFAINYTISLGVCEFDAKFTSHTEWLKAADSALYHSKEGGRNQTTVHEE 320


>gi|120555138|ref|YP_959489.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter aquaeolei VT8]
 gi|120324987|gb|ABM19302.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter aquaeolei VT8]
          Length = 725

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 14/194 (7%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
           Y     + E   +   I+  +  D L+ L N + F   L           +KL+++F D+
Sbjct: 272 YGIARDVTERKEAEAFINFQAYHDLLTRLPNRALFKDRLELAITHARRSQQKLAVMFLDL 331

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAIL 195
           D FK +ND  GH +GD+++  ++ +L         + R GG+EF           +A  +
Sbjct: 332 DRFKVVNDTLGHAMGDRLLQAVTHRLEKCLRRGDTLSRFGGDEFTLLLPSIHGHDDARNI 391

Query: 196 ANDLRKIIENSQINISSG-PSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRN 253
           A   RK+I   +     G   + + +S GI+      E +  +I  AD A+Y  K  G++
Sbjct: 392 A---RKLIHALKAPFQLGDHEVFVGVSIGISVFPEAGETMDLLIQNADIAMYHVKARGKD 448

Query: 254 RVVCFSDIEN-NTC 266
               +SD  + NT 
Sbjct: 449 GYRFYSDSMSINTA 462


>gi|226357254|ref|YP_002786994.1| regulator protein [Deinococcus deserti VCD115]
 gi|226319244|gb|ACO47240.1| putative regulator protein, GGDEF domain; putative membrane protein
           [Deinococcus deserti VCD115]
          Length = 361

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/258 (24%), Positives = 114/258 (44%), Gaps = 22/258 (8%)

Query: 17  KNLESFSPHTFMIYFSIF-----FSIFIATVIFIANIFLFYIGL-TPFYGL----EYILV 66
            N   + P  +++ F  F         +     +A I L Y+   T   GL      +L+
Sbjct: 108 GNYSYWLPLVYVVAFLAFSGRVALGASLGVFATLAAIVLSYVATGTDDMGLKRENSVLLI 167

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI------- 119
           + L      I+  LL G +    +  +  + +  ++   +D L+ + N    +       
Sbjct: 168 QVLLTHATFISFFLLFGVLQNRYVSAIAEAQSE-ARAGYLDVLTNVANRRQLMLWLTSRQ 226

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
           +   +  E L ++ FD+D FK IND +GH  GD+V+   +  +          GR GGEE
Sbjct: 227 NRAETTGEPLCVILFDLDRFKHINDTYGHDYGDEVLKRTAAAVAGALRRGTLFGRWGGEE 286

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F      ++  EA  +A  +R  +   + ++     + +T+S G+A+    E +  ++ R
Sbjct: 287 FLVVLPATARGEARGVAERIRHSVAEVRYDLP----VQVTVSLGVAQAQPGENLQALLKR 342

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD+A+Y AK +GRN+V  
Sbjct: 343 ADEAMYAAKHAGRNQVQA 360


>gi|218441976|ref|YP_002380305.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7424]
 gi|218174704|gb|ACK73437.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7424]
          Length = 465

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 91/184 (49%), Gaps = 13/184 (7%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDID 137
           I+   + E  +   ++ QL+R+D L+G+ N   F  +L           + LS++  DID
Sbjct: 264 ITVRDITERKLMELKLHQLARLDGLTGVANRRYFEETLAKEWKRGIRDKQPLSLILCDID 323

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           YFK  ND +GH  GD+ +  ++  +   V  +   V R GGEEF      +  Q A  +A
Sbjct: 324 YFKIYNDTYGHLKGDECLIRVAKAINRAVKRSTDLVARYGGEEFGIILTNTERQGAIAIA 383

Query: 197 NDLRKIIENSQINISSGPS---IHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSG 251
             ++K +   +I   +       +I +S G+A    ++ +S   ++  AD+ALY AKK G
Sbjct: 384 QSIQKAVNQLKIPHPNPREKNHHYIAMSLGVASLIPQKKLSPKILVASADKALYEAKKQG 443

Query: 252 RNRV 255
           RN +
Sbjct: 444 RNCI 447


>gi|170740443|ref|YP_001769098.1| diguanylate cyclase with PAS/PAC sensor [Methylobacterium sp. 4-46]
 gi|168194717|gb|ACA16664.1| diguanylate cyclase with PAS/PAC sensor [Methylobacterium sp. 4-46]
          Length = 554

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 12/183 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            +     +  R + L+  D L+GL N   F   L  +           +++  D+D FK 
Sbjct: 365 DITHRKEAEARAAHLASHDPLTGLPNRLLFQERLARHLAETRSRGVPCAVLCLDLDGFKA 424

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLR 200
           +ND+ GHP+GD ++  ++D++         V RLGG+EFA    G   +E +  +A  L 
Sbjct: 425 VNDSLGHPIGDALLREVADRIRATLRASDTVARLGGDEFAVLLPGHQPRERSGRVAERLI 484

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
             +    + +     + + +S GIA           +I RAD ALY AK  GRN    F 
Sbjct: 485 DAVRE-PLRLKEMQVV-VGVSIGIAVAPEDGLDEDDLIRRADVALYRAKGGGRNTYR-FH 541

Query: 260 DIE 262
           + E
Sbjct: 542 EAE 544


>gi|156935524|ref|YP_001439440.1| hypothetical protein ESA_03386 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533778|gb|ABU78604.1| hypothetical protein ESA_03386 [Cronobacter sakazakii ATCC BAA-894]
          Length = 355

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 68/274 (24%), Positives = 121/274 (44%), Gaps = 29/274 (10%)

Query: 10  SIWLCHEKNLESFSPHTFM-----IYFSIFFSIFIATVIFI-------------ANIFLF 51
           ++W     NL   SP         +  S+  ++FIA + FI              +  L+
Sbjct: 82  ALWSA---NLWLKSPWCVFHDGTCLLISLLGALFIAALSFINMPGPGIAFCLPIISTILW 138

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
              + P     + L   L  ++I   I      ++  +++ L      ++ LS +D L+G
Sbjct: 139 LDNVQPPVFYAFTLTVPLMGLVIQHFIGRHNDILARQMVQTLIDEKATLNDLSMMDPLTG 198

Query: 112 LLNHSAFISSLGS----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
           L N   F +   +      ++  ++  DID+FK  ND++GH +GD+ +  +S  +     
Sbjct: 199 LCNRRGFENRFANLSPDAGQRF-VLLMDIDHFKAYNDHYGHMMGDQALTRVSAAIRDAVR 257

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIA 225
           +   V R GGEEF      + E+ A + A  +R+ + + +I      S+  ++T+S GIA
Sbjct: 258 SRDIVTRYGGEEFMVLLTQADEKSARLTAERIRQRVYDLRIPHIFNESVATNVTLSIGIA 317

Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                + I   + RAD+ALY AK  GRN +    
Sbjct: 318 -PLENDDIEDALRRADEALYAAKNQGRNHIRYHD 350


>gi|149907506|ref|ZP_01896253.1| GGDEF family protein [Moritella sp. PE36]
 gi|149809176|gb|EDM69105.1| GGDEF family protein [Moritella sp. PE36]
          Length = 347

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 8/179 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYF 139
           + + + +L  +       +  D L+GLLN   F   + ++      N   SI+  DID F
Sbjct: 165 AQAEIAQLRETLLETQHDAMHDSLTGLLNRRVFSKEIETFCSNPTLNRNFSILMVDIDNF 224

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND+FGH +GD+V+  ++ ++         V R GGEEF       +   A   A  +
Sbjct: 225 KAFNDDFGHQLGDQVLKAIAKRIADSCQEGEQVFRYGGEEFVLILPNKTFTIARQNAESI 284

Query: 200 RKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R+ IE   I       +  +IT+S G++E   ++    I+ RAD  LY AK+ GRNRV+
Sbjct: 285 RRAIERLSIRDKRTGKVIDNITVSIGVSENKPRDTSHEILTRADLQLYEAKRLGRNRVM 343


>gi|90412402|ref|ZP_01220406.1| hypothetical protein P3TCK_11474 [Photobacterium profundum 3TCK]
 gi|90326664|gb|EAS43063.1| hypothetical protein P3TCK_11474 [Photobacterium profundum 3TCK]
          Length = 622

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 68/165 (41%), Positives = 88/165 (53%), Gaps = 13/165 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  LS  D L+GL N     S           Y    S++ FDID+FK+IND +GH VGD
Sbjct: 460 IELLSITDSLTGLYNRYKLESVLSSESSRCERYQSDFSVIIFDIDFFKKINDTYGHLVGD 519

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  L+  L           R GGEEF   A  ++  EA I A  LR +IEN       
Sbjct: 520 DVLIHLAQLLKENTRITDVASRWGGEEFLIVACNTNLHEAFIFAEKLRIVIENYNF---- 575

Query: 213 GPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            PSI  +TIS G+A+  +KE IS ++ RAD ALY AKK G+N+V+
Sbjct: 576 -PSIGKMTISCGVAQYINKETISELVSRADLALYQAKKMGKNKVI 619


>gi|319778162|ref|YP_004134592.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171881|gb|ADV15418.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 334

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 13/177 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L+RID L+GL N   F   L             LS++  D D FK+ N
Sbjct: 156 RQLIGANLELERLTRIDGLTGLGNRRYFDEYLAAEWKRAFRAQSPLSLLMIDADNFKRYN 215

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+V+  ++  +      +     R GGEEF    + +  ++++ +A  L + 
Sbjct: 216 DTYGHMAGDEVLKQIARVIQSGSGRSTDLAARYGGEEFVVVLVDTLLEQSSAIAERLVQG 275

Query: 203 IENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   ++NI  GP   +TIS G+A       E  +  +  AD AL+ AK  GRNRV  
Sbjct: 276 VR--ELNIPHGPD-RVTISVGVATAVPTADETPNDFVNAADLALFRAKSEGRNRVAV 329


>gi|307137983|ref|ZP_07497339.1| putative diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli H736]
          Length = 410

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 238 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 296

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 297 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 356

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 357 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 407


>gi|107026659|ref|YP_624170.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
 gi|116692151|ref|YP_837684.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
 gi|105896033|gb|ABF79197.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia cenocepacia AU 1054]
 gi|116650151|gb|ABK10791.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia cenocepacia HI2424]
          Length = 354

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 12/179 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+GL N       L +   +       LS++  D+D FK  N
Sbjct: 160 QQLLEANLELRRLTHSDGLTGLSNRRYLDEYLAAEWRRGARERSELSLLMIDVDNFKLYN 219

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD V+  ++  +    G +  F  R GGEEFA     SS   A +L   +R  
Sbjct: 220 DTYGHVSGDSVLKQIASTIERCLGQSGDFAARFGGEEFAVVMPASSPGAARLLGEKIRLA 279

Query: 203 IENSQINISSGPS--IHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +E  ++  +   +    +TIS G A        P + +I  AD+ALY AK  G+NRV  
Sbjct: 280 VEALRLRHAHSSTGNHTVTISIGGASIVPAPGLPTTVLIEAADRALYRAKHEGKNRVEI 338


>gi|22127627|ref|NP_671050.1| HmsT protein [Yersinia pestis KIM 10]
 gi|108809850|ref|YP_653766.1| HmsT protein [Yersinia pestis Antiqua]
 gi|108810461|ref|YP_646228.1| HmsT protein [Yersinia pestis Nepal516]
 gi|150260535|ref|ZP_01917263.1| predicted diguanylate cyclase [Yersinia pestis CA88-4125]
 gi|165936531|ref|ZP_02225099.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166212091|ref|ZP_02238126.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167400664|ref|ZP_02306173.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167418700|ref|ZP_02310453.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426093|ref|ZP_02317846.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467770|ref|ZP_02332474.1| HmsT protein [Yersinia pestis FV-1]
 gi|218927626|ref|YP_002345501.1| HmsT protein [Yersinia pestis CO92]
 gi|229840307|ref|ZP_04460466.1| predicted diguanylate cyclase [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842386|ref|ZP_04462541.1| predicted diguanylate cyclase [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229900648|ref|ZP_04515772.1| predicted diguanylate cyclase [Yersinia pestis Nepal516]
 gi|270487991|ref|ZP_06205065.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis KIM
           D27]
 gi|294502523|ref|YP_003566585.1| HmsT protein [Yersinia pestis Z176003]
 gi|4583441|gb|AAD25088.1|AF129277_1 HmsT [Yersinia pestis]
 gi|5758037|gb|AAD50642.1|AF132982_1 HmsT [Yersinia pestis]
 gi|21960739|gb|AAM87301.1|AE013979_1 hemin storage system protein [Yersinia pestis KIM 10]
 gi|108774109|gb|ABG16628.1| HmsT protein [Yersinia pestis Nepal516]
 gi|108781763|gb|ABG15821.1| HmsT protein [Yersinia pestis Antiqua]
 gi|115346237|emb|CAL19106.1| HmsT protein [Yersinia pestis CO92]
 gi|149289943|gb|EDM40020.1| predicted  diguanylate cyclase [Yersinia pestis CA88-4125]
 gi|165915647|gb|EDR34256.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166206837|gb|EDR51317.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962694|gb|EDR58715.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050032|gb|EDR61440.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055016|gb|EDR64816.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229681987|gb|EEO78079.1| predicted  diguanylate cyclase [Yersinia pestis Nepal516]
 gi|229690696|gb|EEO82750.1| predicted  diguanylate cyclase [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696673|gb|EEO86720.1| predicted  diguanylate cyclase [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|262360553|gb|ACY57274.1| HmsT protein [Yersinia pestis D106004]
 gi|262364500|gb|ACY61057.1| HmsT protein [Yersinia pestis D182038]
 gi|270336495|gb|EFA47272.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis KIM
           D27]
 gi|294352982|gb|ADE63323.1| HmsT protein [Yersinia pestis Z176003]
 gi|320017013|gb|ADW00585.1| putative diguanylate cyclase [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 390

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 117/256 (45%), Gaps = 22/256 (8%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLLLGYI 85
           +  S+F   FI+T+    N   F +   P   +  IL++   N+  +I +I + L+   +
Sbjct: 132 LLLSLFTIFFISTIALSDNFLAFCLHTAP-SAITVILLDDFHNIFRIIFTIMLPLIGFSL 190

Query: 86  SGSILKE-----------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LS 130
              +L+            L     + S LS ID L+ L N     S L +   +      
Sbjct: 191 HHLMLRRTDNFTRKLVDHLSNEREKFSDLSMIDPLTSLYNRRGLESKLETLLSQSPGNHY 250

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  DID+FK  NDN+GH +GD+ +  +S  +     +   V R GGEEF       SE+
Sbjct: 251 VLLLDIDHFKAYNDNYGHTMGDQALVRISAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEE 310

Query: 191 EAAILANDLRKIIENSQINISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAK 248
            A  LA  +R+ +    I       +   +T+SAGI+     +  +++   AD+ALY AK
Sbjct: 311 YANQLAERVRQRVLGLDIPHVFNHKVSTTVTLSAGISPLQAYDLAASL-KAADEALYRAK 369

Query: 249 KSGRNRVVCFSDIENN 264
           ++GRN +    D  +N
Sbjct: 370 RNGRNNIEFAKDELSN 385


>gi|302879091|ref|YP_003847655.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
 gi|302581880|gb|ADL55891.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
          Length = 907

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 11/186 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             + E   +  +I  L+  D L+GL N       L          + KL++++ D+D+FK
Sbjct: 465 RDITEQKQTSAQIEHLAYHDQLTGLPNRRLLKDRLSQAVSSVVRRDAKLALMYLDLDHFK 524

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
            +ND+ GH  GD ++  ++++L         + R+GG+EF     G +   + A +A  +
Sbjct: 525 DVNDSLGHGAGDVLLQIVAERLQGCVRADDTLARMGGDEFVLLLNGVNGADDVASIAGKI 584

Query: 200 RKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             I E SQ        + IT S GI+           ++  AD ALY AK+ GR     +
Sbjct: 585 --IHELSQPMRIGNDELRITPSLGISMCPQDGRDADDLLKYADVALYQAKQQGRATYRFY 642

Query: 259 SDIENN 264
           +   ++
Sbjct: 643 TQALHD 648


>gi|51594921|ref|YP_069112.1| diguanylate cyclase/phosphodiesterase [Yersinia pseudotuberculosis
           IP 32953]
 gi|51588203|emb|CAH19810.1| diguanylate cyclase/phosphodiesterase domain 1 [Yersinia
           pseudotuberculosis IP 32953]
          Length = 390

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 118/256 (46%), Gaps = 22/256 (8%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLLLGYI 85
           +  S+F   FI+T+    N   F +   P   +  IL++   N+  +I +I + L+   +
Sbjct: 132 LLLSLFTIFFISTIALSDNFLAFCLHTAP-SAITVILLDDFHNIFRIIFTIMLPLIGFSL 190

Query: 86  SGSILKE-----------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LS 130
              +L+            L     + S LS ID L+ L N     S L +   +      
Sbjct: 191 HHLMLRRTDNFTRKLVDHLSNEREKFSDLSMIDPLTSLYNRRGLESKLETLLSQSPGNHY 250

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  DID+FK  NDN+GH +GD+ +  +S  +     +   V R GGEEF       SE+
Sbjct: 251 VLLLDIDHFKAYNDNYGHTMGDQALVRISAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEE 310

Query: 191 EAAILANDLRKIIENSQINISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAK 248
            A+ LA  +R+ +    I       +   +T+SAGI+     +  +++   AD+ALY AK
Sbjct: 311 YASQLAERVRQRVLGLDIPHVFNHKVSTTVTLSAGISPLQAYDLAASL-KAADEALYRAK 369

Query: 249 KSGRNRVVCFSDIENN 264
           ++GRN +    D  +N
Sbjct: 370 RNGRNNIEFAKDELSN 385


>gi|95930950|ref|ZP_01313679.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95132959|gb|EAT14629.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 368

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 9/176 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL  +  ++  L+  D L+GL N                S    L+ +  D D FK+IN
Sbjct: 192 QELAEANQKLGDLAMTDFLTGLHNRRYALLSLETLWQEADSEGHPLACIMVDADGFKEIN 251

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GDKV+  LS QL     T   V R+GG+EF      +    A  +   L + +
Sbjct: 252 DTYGHDAGDKVLCLLSRQLKETVRTDDIVCRMGGDEFLIICPKTDIVGAMSVGELLHQAV 311

Query: 204 ENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              Q  +  G    +  S G+ A   H   I  ++  AD+ LY AKK+G+N V  F
Sbjct: 312 CQLQYPL-GGDLCQVRASIGVAALTQHVRTIEDLLVAADKGLYEAKKAGKNCVKRF 366


>gi|331652391|ref|ZP_08353410.1| putative GGDEF domain protein [Escherichia coli M718]
 gi|331050669|gb|EGI22727.1| putative GGDEF domain protein [Escherichia coli M718]
          Length = 430

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 258 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|326316390|ref|YP_004234062.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373226|gb|ADX45495.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 689

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           S   L     +  RI QL+  D L+GL N           + +  +     +I+F D+D 
Sbjct: 240 SFRDLTLQHAAQKRIEQLAYSDVLTGLPNRLLLSRCVASALETARAQGGGFAILFIDLDR 299

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND+ GH  GD+V+  ++ +L         + RLGG+EF        E  A  +A+ 
Sbjct: 300 FKIINDSLGHLFGDRVLQLVAQRLQGCLRQSDMLCRLGGDEFVLHLDAGDESMAESVAHR 359

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + + +   Q  +  G    I  S GIA      E +  +I +AD A+Y  K+ GR     
Sbjct: 360 ILEDMR--QPFMLDGMGFSIQCSIGIALHPRDGETLDDLIKQADTAMYRVKERGRGSYGF 417

Query: 258 FSDIEN 263
           +    N
Sbjct: 418 YQPQMN 423


>gi|258620900|ref|ZP_05715934.1| sensory box/GGDEF family protein [Vibrio mimicus VM573]
 gi|258586288|gb|EEW11003.1| sensory box/GGDEF family protein [Vibrio mimicus VM573]
          Length = 584

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 11/181 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +LS +D L+ + N   F   L           + LSI+  D+D+FK  N
Sbjct: 397 EQLEAANQELERLSFLDSLTQVANRRRFDEQLHTLWHLHAREGKPLSIILCDVDFFKDYN 456

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH +GD+ +  ++     V       V R GGEEF      + +  A ++A  + + 
Sbjct: 457 DAYGHLMGDETLKQVAIAFTQVANRQSDCVARYGGEEFGILLPNTPQSGAVLIAERIHEK 516

Query: 203 IENSQINISSGP-SIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +  I  +    +  IT+S G+       ++    I+  ADQALY AK +GRN+   + 
Sbjct: 517 MRSLAIPHAHSKIADRITVSLGMVTHIPSPEDVPEQILALADQALYQAKANGRNQTSIYE 576

Query: 260 D 260
           D
Sbjct: 577 D 577


>gi|229158975|ref|ZP_04287032.1| GGDEF domain protein [Bacillus cereus ATCC 4342]
 gi|228624586|gb|EEK81356.1| GGDEF domain protein [Bacillus cereus ATCC 4342]
          Length = 351

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 12/227 (5%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           SIFI  + F  N++   I + P   L   +   ++L ++  +++  + +IS + + +   
Sbjct: 126 SIFIRWIWF--NVYSLSILIVPLSMLFKDM-SIVALYLVCSSVAAYITFISANYVLQSNE 182

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
            + ++ Q + ID L+GL N       +  +       N+ L ++F DID+FK +ND +GH
Sbjct: 183 LFQKMKQYATIDALTGLGNVRQLDLEMNRHISNKRTKNDSLCLLFIDIDHFKSVNDTYGH 242

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           P GD+V+  +   L  +   P    R GGEEFA             +   +R  +E    
Sbjct: 243 PAGDEVLKQIGCILREISPFPDLAFRKGGEEFALLIPQKGLAYGMHMGEQVRAAVEKHLF 302

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  G  I IT+S GI+    ++     I  AD ALY +K++GRN+V
Sbjct: 303 QLLDGTKIKITVSVGISVY--EQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|220935645|ref|YP_002514544.1| putative diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996955|gb|ACL73557.1| putative diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 584

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 115/287 (40%), Gaps = 39/287 (13%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATV--IFIANIFLFYIGLTPFYGLEYILVE- 67
           +WL H    E  +  T  + + +   +F+AT     +  + L  + L P   LE   +  
Sbjct: 289 LWLGHVPG-EQIAQATRGLGWLVLLVVFVATAGTFLMVQLALRVLVLKPLATLERAALRI 347

Query: 68  ---NLSLVIISITISLLLGYISG--SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
              +     +      + G +     ++  L  S+ +I  ++  D L+GL N   F   L
Sbjct: 348 GEGSWDFPALHRRGDEIGGLMQAFEQMVDRLQDSHQQIHHMAYHDELTGLANRKQFNDHL 407

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM----- 170
                      E+ +++F D+D FK IND  GH +GD+V+   ++ +             
Sbjct: 408 SRAVDLARRQGERFAVLFLDLDRFKDINDTHGHDMGDRVLRHFAELVSACVRDQDYVARG 467

Query: 171 --------------FVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPS 215
                          V RLGG+EF     G  +  +   +   + + +E  Q  +  G +
Sbjct: 468 QPVPSPGSREADGEMVARLGGDEFIVLLRGLHAPADVLRVTGRILQGLE--QPFVHEGVT 525

Query: 216 IHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           + +  S G+A      +    ++ RAD A+Y AK+ G +RV  + D 
Sbjct: 526 LMLRTSIGVAFYPQDGDNAEQLMQRADFAMYRAKQDGTHRVWFYRDA 572


>gi|218245788|ref|YP_002371159.1| diguanylate cyclase [Cyanothece sp. PCC 8801]
 gi|218166266|gb|ACK65003.1| diguanylate cyclase [Cyanothece sp. PCC 8801]
          Length = 494

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 78/168 (46%), Gaps = 11/168 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
             + Q +  D L+GL N      SL    E+       L I+  D+D+FK +ND FGH  
Sbjct: 319 ETLKQQNIRDALTGLYNRRYLEESLKKELERAKRKERSLGIIMIDVDHFKNVNDTFGHDK 378

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  L   L           R GGEE       +S +     A  LR+ ++N  +++
Sbjct: 379 GDQVLKKLGGFLQRHIRGSDIACRYGGEELTLILPEASLENTRQRAEQLRQAVKNLDLDL 438

Query: 211 SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
                  +TIS GIA    H      ++  ADQALY AK+ GR+ V+C
Sbjct: 439 CDH---TLTISVGIACFPEHGYSGKALLKTADQALYQAKQQGRDCVIC 483


>gi|119946190|ref|YP_943870.1| diguanylate cyclase with PAS/PAC sensor [Psychromonas ingrahamii
           37]
 gi|119864794|gb|ABM04271.1| diguanylate cyclase with PAS/PAC sensor [Psychromonas ingrahamii
           37]
          Length = 412

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 16/196 (8%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           + ++  +   E     + IS+L+  D L+GL N    +  L           +  +++  
Sbjct: 183 ILFLVLNDTTERHNHVDEISRLAFFDPLTGLPNRRLLLDRLNHAVISTDRNGKLGAVMML 242

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ---- 190
           D+D FKQ+ND  GH  GD ++  ++ +L         + RLGG+EF     G SE     
Sbjct: 243 DLDNFKQLNDTKGHADGDMLLQQIAIRLQKCVRKNDSLARLGGDEFVVLLEGLSENTVEA 302

Query: 191 --EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247
             EA  +A  ++   E S   I    + +IT S GI     K E +  ++  AD A+Y A
Sbjct: 303 NSEAMHIAKKIQH--EFSLPFIFCDYTHYITASIGITIFMQKTENVDNLLKNADVAMYKA 360

Query: 248 KKSGRNRVVCFSDIEN 263
           K +GRN++  F     
Sbjct: 361 KAAGRNKICFFEAPMQ 376


>gi|109898022|ref|YP_661277.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109700303|gb|ABG40223.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
          Length = 370

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 105/226 (46%), Gaps = 12/226 (5%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE---LFI 95
           +    F+A + L Y G   F   +Y    +  L+   IT+SLL  +   S  +    L  
Sbjct: 142 LGCFAFVAIVILEYPG-NLFLMAQYSDEFSSRLIYSFITVSLLFVFYEYSRQRSFKTLQE 200

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
                 + +R+D LSGL N    +  L         +++ L+++  DID+FK++ND FGH
Sbjct: 201 LSREFEKQARLDPLSGLQNRRGMLEKLEYEHQRTLRHHKNLTLMMCDIDHFKRVNDKFGH 260

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD VI  +             V R GGEEF      +++++A  LA  LR  +   Q 
Sbjct: 261 DVGDGVITQVGQLFDKALRKQDTVARWGGEEFLFLLPETTQEQAFTLAEKLRAQVSKQQY 320

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +   S  +T+S GI +   ++ +   I RAD  LY AK +GRN 
Sbjct: 321 Q-AGSDSFTVTVSLGIYQMHPQDNLDHAISRADTNLYRAKSNGRNC 365


>gi|241765598|ref|ZP_04763555.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
 gi|241364595|gb|EER59649.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
          Length = 695

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 88/191 (46%), Gaps = 11/191 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           +    +     +  R + L+  D L+ L N  + +  LG           +++++F ++D
Sbjct: 244 VVVRDITARKEAQERETFLALHDTLTQLPNRRSLMEQLGKALSMARRRKSQVAVLFINLD 303

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILA 196
           +FK +ND+ GH  GD+++  ++++L         V RL G+EFAA      S  +AA++A
Sbjct: 304 HFKTVNDSLGHHAGDQLLRDVAERLRQGVRETDLVARLSGDEFAAVLTDIASPADAAMVA 363

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + L + +    +       + ++ S GI+   C       ++  AD A+Y AK SGR   
Sbjct: 364 DKLLEAMRG--VFTVDQLPVTMSPSIGISMFPCDDATAEGLLRCADTAMYHAKDSGRGNR 421

Query: 256 VCFSDIENNTC 266
             +    + + 
Sbjct: 422 QFYQPGMDASA 432


>gi|152976454|ref|YP_001375971.1| diguanylate cyclase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025206|gb|ABS22976.1| diguanylate cyclase [Bacillus cytotoxicus NVH 391-98]
          Length = 431

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 11/178 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           + + EL   Y    +L+ ID L+ + N   F   L           +K++++FFDID FK
Sbjct: 253 TDITELDELYQEQERLATIDTLTEIYNRLKFQQILEEVWKSAQRNRQKIALIFFDIDDFK 312

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD  +  L++ +     +     R GGEEF      ++E+EA  +A  LR
Sbjct: 313 KVNDTYGHDFGDLALIQLAELVKTKIDSKYTFARWGGEEFVILVTDTTEKEAFQVAESLR 372

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             IE  Q +  S     +T S G+A          +I RAD ALY AK++G+N+V  +
Sbjct: 373 FFIETKQFSSIS----KLTASFGVALYEQGITKEELIQRADIALYEAKQNGKNQVRIY 426


>gi|148550034|ref|YP_001270136.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Pseudomonas
           putida F1]
 gi|148514092|gb|ABQ80952.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida F1]
          Length = 708

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 51/210 (24%), Positives = 100/210 (47%), Gaps = 16/210 (7%)

Query: 71  LVIISITISLLLGYISGSILKELFIS-----YNRISQLSRIDCLSGLLNHSAFISSLG-- 123
           LV ++++ + L       ++  L +S     + ++   +  D L+GLLN   F  +    
Sbjct: 240 LVPVALSCAPLPADQQAMVVTVLDMSVVRNLHQQLEYQAITDPLTGLLNRRGFYQAAEGA 299

Query: 124 -----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                  ++  ++++ D+D FK+IND+ GH  GD+V+ ++++QL    G+   + R+GG+
Sbjct: 300 LLRNERSDKAQALMYMDLDGFKRINDSLGHDAGDRVLRWVAEQLKDCLGSEALLARMGGD 359

Query: 179 EFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTI 236
           EF A        ++A   A  L + +  S  +   G  + + +S GIA        +  +
Sbjct: 360 EFTALFDSLPYPEQAGRYAERLLERVSIS--HEVDGLDVCLGVSIGIATYPDCGANVEGL 417

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           +  AD A+Y AK++GR +   +    N   
Sbjct: 418 LRSADAAMYAAKQAGRQQYRFYDQELNGRA 447


>gi|330974006|gb|EGH74072.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 796

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 60/175 (34%), Positives = 87/175 (49%), Gaps = 10/175 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +L      +  LS  D L+G  N   F   +         +   LSI+  DID+FK
Sbjct: 620 SDITDLKRVEQELRVLSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSIIMLDIDHFK 679

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +A  LA  LR
Sbjct: 680 RINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGARGAQAYQLALSLR 739

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + + N  I    G    +T S GIA     E I  ++ RAD  +Y AK++GR+RV
Sbjct: 740 EELRNQAI---EGVDQVVTGSFGIASWREGEGIDEMLLRADSGVYAAKQAGRDRV 791


>gi|313497162|gb|ADR58528.1| GGDEF domain-containing protein [Pseudomonas putida BIRD-1]
          Length = 496

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 10/170 (5%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
             +   ++ L+  D L+GL N            +      + L+++  D+D+FK  N   
Sbjct: 324 HEAEEDLAMLASTDSLTGLANRRRLDHVLRQEWARAQRSRKPLAVLMVDVDHFKAFNQRH 383

Query: 147 GHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           GH  GD  +  ++  +      P     R GGEEF      +    A +LA  +R  +E 
Sbjct: 384 GHAGGDHALREVAKAIETCIRRPADLAARYGGEEFQVVLPETDLAGAQLLAERIRASVEA 443

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                    +  +T+S GI     ++ +  ++  AD+ALY AK +GRNRV
Sbjct: 444 LAPFADDAHA--VTVSIGIGLSGTQQDLGRLLGAADEALYRAKANGRNRV 491


>gi|312958309|ref|ZP_07772830.1| putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           domain [Pseudomonas fluorescens WH6]
 gi|311287373|gb|EFQ65933.1| putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           domain [Pseudomonas fluorescens WH6]
          Length = 333

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
              + E       + +L+  D L+   N   F                 L+ +  DID F
Sbjct: 155 AEDITEKKQLELELQRLATTDVLTQSSNRRHFFECANQAFDTACAQGAPLAFLLLDIDDF 214

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND++GH  GD+V+  +++    V       GR+GGEEFAA   G + + A  +A  L
Sbjct: 215 KDINDSYGHLEGDQVLRRIAESGRGVLRRGDLFGRIGGEEFAAVLPGCAPEMALQVAERL 274

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            K I+    N   G +  +TIS G+A     +  + ++  RAD A+Y AK+ G+NRVV 
Sbjct: 275 GKEIQALSFNY-EGRAFSVTISQGLASLTEDDATLDSLFARADTAMYEAKRLGKNRVVA 332


>gi|309783283|ref|ZP_07677995.1| YaiC/YhcK/ArdA family protein [Ralstonia sp. 5_7_47FAA]
 gi|308917952|gb|EFP63637.1| YaiC/YhcK/ArdA family protein [Ralstonia sp. 5_7_47FAA]
          Length = 364

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 118/256 (46%), Gaps = 29/256 (11%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGL---------------TPFYGLEYILVENLSLV 72
           +++F++  S+ + T+  +  I     GL               T   GL +    ++ ++
Sbjct: 100 LMHFNLLPSVMLLTLTMVDKITTGIRGLWVRALWVMLAAGVASTAVMGLHWAPETSMRVI 159

Query: 73  IISITI----SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125
           +  + +    +L +  +S  ++++       + +L R+D L+GL     +     +    
Sbjct: 160 VACLPVMSLHTLSVSAVSYQLIRQSARQNQMLDELRRVDALTGLFGRGHWQEQAEAALRR 219

Query: 126 ----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
               +E   ++  DID+FK+IND +GH VGD+VI  L+  +          GR GG+EFA
Sbjct: 220 HHTTDEPACMLMLDIDHFKEINDAYGHTVGDEVIRALAHVVRGNVRAGDCAGRYGGDEFA 279

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRA 240
               G   ++A  +A  +R+  E   + + S P + IT S G+A   H    +   I  A
Sbjct: 280 IVLPGMHARDALAIAQRIREQTEG--VRLRSLPELRITSSIGVAPADHRHSSLRAWIDAA 337

Query: 241 DQALYVAKKSGRNRVV 256
           D ALYVAK  GRN+V 
Sbjct: 338 DAALYVAKNGGRNQVA 353


>gi|300997431|ref|ZP_07181771.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1]
 gi|300304250|gb|EFJ58770.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1]
          Length = 371

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|229019255|ref|ZP_04176083.1| Sensory box/GGDEF family protein [Bacillus cereus AH1273]
 gi|229025500|ref|ZP_04181910.1| Sensory box/GGDEF family protein [Bacillus cereus AH1272]
 gi|228735782|gb|EEL86367.1| Sensory box/GGDEF family protein [Bacillus cereus AH1272]
 gi|228742038|gb|EEL92210.1| Sensory box/GGDEF family protein [Bacillus cereus AH1273]
          Length = 430

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 85/176 (48%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          +EK++++ FDID FK +
Sbjct: 254 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILETEWENVIRNDEKIALILFDIDNFKSV 313

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L+D +           R GGEEF      + E+EA  +A  LR  
Sbjct: 314 NDTYGHDFGDLALVQLADLMKSKVEHQHIFARWGGEEFIILVTDTVEKEAFQVAESLRFF 373

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q +  S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 374 IETKQFSGIS----KLTASFGVALYEQGITKEELMQRADIALYEAKKNGKNQVCIY 425


>gi|221639846|ref|YP_002526108.1| response regulator receiver modulated diguanylate cyclase
           [Rhodobacter sphaeroides KD131]
 gi|221160627|gb|ACM01607.1| Response regulator receiver modulated diguanylate cyclase
           [Rhodobacter sphaeroides KD131]
          Length = 461

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 86/169 (50%), Gaps = 13/169 (7%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+ +D L+GL N                + +E+ +++  D+D FK +ND +GH  GD V
Sbjct: 287 RLAVVDPLTGLYNRRYAGAHLAAVAERARASDERFAVMVIDLDRFKSVNDRWGHGAGDAV 346

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSG 213
           +  ++ +L         + R+GGEEF  A       ++A  +A  LR+ +E   + +  G
Sbjct: 347 LVAVARRLHANLRPGDLIARIGGEEFLVALPDVPRPEDAHAVAERLREAVEEEPVPLPGG 406

Query: 214 PSIHITISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNRVVC 257
            S+ +TIS G+A          EP+  ++ RAD AL +AK +GRN+V  
Sbjct: 407 GSLRVTISVGLALSPDGAGRRAEPVDAVVQRADSALLLAKSAGRNQVTI 455


>gi|21112594|gb|AAM40815.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris
            str. ATCC 33913]
 gi|66574354|gb|AAY49764.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris
            str. 8004]
          Length = 1050

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 8/176 (4%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
            +L  L I  +   + +  D L+GL N   F  +L             L +   DID+FK+
Sbjct: 875  LLTRLRIKSDAFERQAHEDALTGLPNRRHFDEALARDLSRARRSGRPLVLAILDIDHFKR 934

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            IND + H  GD V+  +   L           RLGGEEFA     ++ ++A  L   +R 
Sbjct: 935  INDQYSHASGDAVLHDVGVLLTAAARASDLPARLGGEEFALLLSDTTLEQAHALCLRIRA 994

Query: 202  IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               +++ +      + +T SAG+AE   +E  S+++ RAD ALY AK +GR+R+  
Sbjct: 995  QF-HARHDWGGVEGLQVTFSAGLAELGEEESGSSLMQRADHALYEAKSAGRDRICI 1049


>gi|115524460|ref|YP_781371.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
 gi|115518407|gb|ABJ06391.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
          Length = 779

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 11/187 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSY---NEKLSIVFFDIDYFK 140
             + E   +  ++ +L+  D L+GL N S F      +L  Y     + +++  D+D FK
Sbjct: 323 QDITERKQAEEQLQKLAYYDPLTGLPNRSLFRRKAEDALERYLHGGGEAAVMLLDLDRFK 382

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
           ++ND+ GH  GD+++  ++  +  V G    + RLGG+EF      +    E   LA D+
Sbjct: 383 EVNDSLGHAAGDELLDKVAHVISRVLGNRHLLARLGGDEFGIIVTDALGRAEIEALARDI 442

Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +    I +S G  + I  S GIA      + IS ++  AD ALY AK++GR R   F
Sbjct: 443 ITAVSE-PIALSRG-EVAIGTSVGIAGIPRDGDTISDLLRNADLALYRAKEAGRGRFQFF 500

Query: 259 SDIENNT 265
            +  + T
Sbjct: 501 EEDMSTT 507


>gi|237746692|ref|ZP_04577172.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacter formigenes HOxBLS]
 gi|229378043|gb|EEO28134.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacter formigenes HOxBLS]
          Length = 1077

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 11/185 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
            E   + + I + +  D L+GL N    +  L           +KL+++F D+D FK +N
Sbjct: 634 TEKKEAEDMIWRQANFDFLTGLPNRRMLLDRLQQEIVKVNQSGKKLALLFLDLDNFKDVN 693

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKI 202
           D  GH +GD ++  ++ +L         V RLGG+EFA      S  + A  +   + + 
Sbjct: 694 DTLGHDMGDLLLVDVAGRLNECVREIDTVSRLGGDEFAVILTELSDLRIAETVTQCMLRS 753

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +   Q     G   +++ S G+         I T+   ADQALY AK++GRNR+  F+  
Sbjct: 754 LA--QPYRLDGEIAYLSASIGMTVYPDDGTGIETLQKNADQALYAAKQAGRNRMSYFTAS 811

Query: 262 ENNTC 266
                
Sbjct: 812 MQAAA 816


>gi|229031686|ref|ZP_04187679.1| Sensory box/GGDEF family protein [Bacillus cereus AH1271]
 gi|228729570|gb|EEL80557.1| Sensory box/GGDEF family protein [Bacillus cereus AH1271]
          Length = 430

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          +EK++++ FDID FK +
Sbjct: 254 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEAEWDTAMRNDEKIALILFDIDNFKTV 313

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 314 NDTYGHDFGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTDTVEKEAFQVAESLRFF 373

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE    +  S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 374 IETKHFSGIS----KLTASFGVALYEQGITREELMQRADIALYEAKKNGKNQVCVY 425


>gi|227885616|ref|ZP_04003421.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 83972]
 gi|300940411|ref|ZP_07154996.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
 gi|300975482|ref|ZP_07173030.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1]
 gi|301050682|ref|ZP_07197544.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1]
 gi|227837189|gb|EEJ47655.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 83972]
 gi|300297639|gb|EFJ54024.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1]
 gi|300410372|gb|EFJ93910.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1]
 gi|300454805|gb|EFK18298.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
 gi|315286673|gb|EFU46106.1| diguanylate cyclase domain protein [Escherichia coli MS 110-3]
 gi|315290242|gb|EFU49620.1| diguanylate cyclase domain protein [Escherichia coli MS 153-1]
          Length = 558

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LLL  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTSMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCHTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G++  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 536 LADRRLYLAKQAGRNRV-FASD 556


>gi|254515058|ref|ZP_05127119.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [gamma proteobacterium NOR5-3]
 gi|219677301|gb|EED33666.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [gamma proteobacterium NOR5-3]
          Length = 815

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 98/213 (46%), Gaps = 13/213 (6%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L+   G    +     L+    T+  L G  +   + +      ++ QL+  D L+GL N
Sbjct: 346 LSSPNGRRAFISAKFPLLASDSTLMGLAGIYT--DISDRKALEEQLEQLAHFDSLTGLPN 403

Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
            +     L            +L+++F DID FK IND+ GH  GD+++  +S +L  +  
Sbjct: 404 RALARDRLAQGIAQSKRQGSRLAVLFLDIDNFKVINDSLGHHAGDELLLAMSGRLRNILR 463

Query: 168 TPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
               + RLGG+EF A  L   S ++A   AN L       +   + G S+H ++S G+A 
Sbjct: 464 GGDTLSRLGGDEFLAVLLDVKSREDAVFAANKLLAT--TKERFEALGNSVHSSLSIGLAL 521

Query: 227 RCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
                  I  +I  AD A+Y AK +GR RV  +
Sbjct: 522 YPEDGLSIDELIQHADTAMYQAKSAGRGRVATY 554


>gi|119471478|ref|ZP_01613919.1| hypothetical protein ATW7_16675 [Alteromonadales bacterium TW-7]
 gi|119445577|gb|EAW26862.1| hypothetical protein ATW7_16675 [Alteromonadales bacterium TW-7]
          Length = 617

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 64/183 (34%), Positives = 86/183 (46%), Gaps = 11/183 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL      + QL+  D L+G  N   F   L             LSI+  DID+FK I
Sbjct: 436 LRELEEKNRELEQLNTEDALTGAKNRRFFDKKLVMELRRSRREQTPLSIIMIDIDHFKTI 495

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD VI   +D +      P   V R GGEEF      ++ Q A  +A  +R 
Sbjct: 496 NDTYGHLSGDNVIKATADIIKRFLKRPLDEVARYGGEEFVILLPNTANQGAFDIAEQIRL 555

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFS 259
            I  + + I +G  I  TISAG+      +          AD+ALY AK+ GRN+VV F 
Sbjct: 556 DIYQNPV-IVAGAEIKFTISAGVYTFIADDINTPELFTECADKALYSAKQQGRNQVVNFE 614

Query: 260 DIE 262
            I+
Sbjct: 615 TIQ 617


>gi|86749790|ref|YP_486286.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
 gi|86572818|gb|ABD07375.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
          Length = 411

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 65/238 (27%), Positives = 108/238 (45%), Gaps = 19/238 (7%)

Query: 30  YFSIFFSIFIATVIFIANIF--LFYIGLTPFYGLEYILVENLSLVIISI-TISLLLGYIS 86
           + ++   +    V+ +  +   L       +    ++L+  + LV+ +I T+ ++   +S
Sbjct: 148 WPAMLVPLLHGGVLMLPVVLAELLPARSNAYTSNIWVLIFAIELVLYAIGTVFVVFMLVS 207

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
              +     +       + +D L+GL N   F       I         ++++ FD+D+F
Sbjct: 208 EQTVSAHKTA-------AALDPLTGLFNRRGFSEATARMIEREAEAGRPVTVMIFDLDHF 260

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND FGHP GD+VI   +  +          GR+GGEEFAA     S  EA   A  +
Sbjct: 261 KSINDRFGHPAGDEVIKLFAAIVSGSLRISDLCGRIGGEEFAALLP-CSIDEAMTAAERV 319

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R+  E   + +  G  I  T+S G+A       +  ++  AD ALY AK+ GRNRVV 
Sbjct: 320 REAFEGCGLEV-DGAPIATTVSIGVAGGPANIELDVLLAAADTALYQAKRGGRNRVVA 376


>gi|89901264|ref|YP_523735.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Rhodoferax
           ferrireducens T118]
 gi|89346001|gb|ABD70204.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 735

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 11/189 (5%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132
           L   Y     + +   +   I+  +  D L+ L N   F   LG         +  L+++
Sbjct: 286 LFGTYGVARDITDRKRADELITYQAYHDILTDLPNRVLFKDRLGLAVLQAKRNDASLALM 345

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQE 191
           F D+D FK +ND  GH +GDK++   + +L     +   + RLGG+EF A     S  Q+
Sbjct: 346 FIDLDRFKLVNDTLGHVIGDKLLQQAAIRLKACLRSGDTLARLGGDEFTAVLPELSDRQD 405

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
           A ++A    + +   Q    +G S+HI+ S GIA      E    +I  +D A+Y  K  
Sbjct: 406 AVLIAEKFLECLR--QPFQLAGQSVHISASIGIAIYPGDGESTDELIRNSDIAMYHMKAE 463

Query: 251 GRNRVVCFS 259
           G+N    F 
Sbjct: 464 GKNGHSFFD 472


>gi|330911205|gb|EGH39715.1| hypothetical protein ECAA86_01548 [Escherichia coli AA86]
          Length = 430

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 258 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|316932316|ref|YP_004107298.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           DX-1]
 gi|315600030|gb|ADU42565.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           DX-1]
          Length = 903

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 81/190 (42%), Gaps = 10/190 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDY 138
           I+   + E      +IS L+  D L+ L N S F   L       S     ++++ DID 
Sbjct: 458 ITHEDVTERTRYAEKISYLAHFDSLTDLPNRSMFRQRLENELQRASRGAPFALLYIDIDE 517

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILAN 197
           FK IND  GHPVGD+++  ++ +L        FV RLGG+EFA   +  S   +   L  
Sbjct: 518 FKNINDTLGHPVGDELLKQVAVRLRDCVRETDFVARLGGDEFAIIQIAVSGADDVTTLIE 577

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            + + I      +  G  +    S GIA        +  ++  AD A+Y AK  GR    
Sbjct: 578 RIYESIRLPYQCL--GHHLSTDASIGIAIAPRDGADLDQLVKNADLAMYSAKAEGRRTFR 635

Query: 257 CFSDIENNTC 266
            F    +   
Sbjct: 636 FFEPEMDAVA 645


>gi|218780676|ref|YP_002431994.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762060|gb|ACL04526.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 309

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 88/191 (46%), Gaps = 14/191 (7%)

Query: 82  LGYISGSILKELFISYNR------ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128
           L      +L+E      R      + +L+  D L+ L N   F       I     Y   
Sbjct: 113 LSLRIKRVLRERAFDQEREKLMGKLQELAVTDGLTKLYNSRHFYETLDVEIRRARRYGRP 172

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS++ FDID FK  ND +GH  GD+ +A ++  +           R GGEEF      + 
Sbjct: 173 LSLLLFDIDKFKNFNDTYGHIEGDRALARIARAVQDCIRLTDTAFRYGGEEFTVLMPETD 232

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           E+EA  +   + +   +  ++   G  +H+TIS G+ +    E ++ ++ R D+A+Y AK
Sbjct: 233 EEEALGVGQRVCEEARDL-VHRVDGKDVHLTISVGVTQCIPGEDLADMVKRVDEAMYKAK 291

Query: 249 KSGRNRVVCFS 259
           ++G N+V   S
Sbjct: 292 RAGGNQVAALS 302


>gi|157155005|ref|YP_001462650.1| sensory box-containing diguanylate cyclase [Escherichia coli
           E24377A]
 gi|191165081|ref|ZP_03026925.1| sensory box-containing diguanylate cyclase [Escherichia coli B7A]
 gi|300822490|ref|ZP_07102629.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
 gi|300900112|ref|ZP_07118306.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1]
 gi|309796956|ref|ZP_07691357.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
 gi|331677130|ref|ZP_08377826.1| putative GGDEF domain protein [Escherichia coli H591]
 gi|332279459|ref|ZP_08391872.1| sensory box-containing diguanylate cyclase [Shigella sp. D9]
 gi|157077035|gb|ABV16743.1| sensory box-containing diguanylate cyclase [Escherichia coli
           E24377A]
 gi|190904853|gb|EDV64558.1| sensory box-containing diguanylate cyclase [Escherichia coli B7A]
 gi|300356391|gb|EFJ72261.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1]
 gi|300524906|gb|EFK45975.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
 gi|308119484|gb|EFO56746.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
 gi|323185491|gb|EFZ70852.1| hypothetical protein ECOK1357_0853 [Escherichia coli 1357]
 gi|331075819|gb|EGI47117.1| putative GGDEF domain protein [Escherichia coli H591]
 gi|332101811|gb|EGJ05157.1| sensory box-containing diguanylate cyclase [Shigella sp. D9]
          Length = 430

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 258 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|1119215|gb|AAA87378.1| pleD [Caulobacter crescentus CB15]
          Length = 454

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 9/164 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL N       L S         + +S +  DID+FK+IND FGH +GD+V
Sbjct: 287 ELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEV 346

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   + +L           R GGEEF      ++  +A  +A  +R  +  S   ++ G 
Sbjct: 347 LREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGR 406

Query: 215 S-IHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +++TIS G+ A     +    ++ RAD+ +Y AK SGRN VV
Sbjct: 407 EMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVV 450


>gi|77748680|ref|NP_643206.2| response regulator [Xanthomonas axonopodis pv. citri str. 306]
          Length = 494

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 92/198 (46%), Gaps = 14/198 (7%)

Query: 71  LVIISITISLLLG--YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE- 127
           +V+ ++  +LLLG        L+ +  +  ++S  + +D L+G+ N  AF   L    + 
Sbjct: 294 IVVAALGCTLLLGVGIWLDLQLRRMHRNEAKLSTEAWVDALTGIANRRAFDHRLSRALQD 353

Query: 128 ------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEF 180
                  LS++  D+D+FK  ND +GH  GD  +  ++  +            R GGEEF
Sbjct: 354 AVRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCSRRSEDLAARYGGEEF 413

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKE---PISTI 236
                 +    A  LA+ +R  +    +   S P S H+T+S G A     E     + I
Sbjct: 414 GMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGAATFEPGEAPLSPNAI 473

Query: 237 IYRADQALYVAKKSGRNR 254
           ++ AD ALY AK+ GRNR
Sbjct: 474 VHDADSALYRAKQKGRNR 491


>gi|329906570|ref|ZP_08274425.1| putative PAS, PAC and GGDEF domain protein [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327547260|gb|EGF32109.1| putative PAS, PAC and GGDEF domain protein [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 448

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 61/215 (28%), Positives = 104/215 (48%), Gaps = 12/215 (5%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
            L Y  L P  GL +  V N     +    +   G+I+   + E       + + +  D 
Sbjct: 233 HLDYRVLLPVQGLRWRNV-NARPTRLPDGSTQWHGFIT--DITERKRLDIELREFATTDY 289

Query: 109 LSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ L N   F++ L     ++       +++  D+D+FK IND  GH  GD V+A  +  
Sbjct: 290 LTRLPNRRHFLTCLREELARIHRGQPSTAVLMCDLDHFKNINDTHGHAAGDLVLAHFAGM 349

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L          GR+GGEEFA    G++   A + A  +R+ +  SQ  + +G  + +T+S
Sbjct: 350 LQEQLRVNDTAGRIGGEEFAIVLSGATLASATLFAERVRQRMA-SQPPMVTGQPLVVTVS 408

Query: 222 AGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
            GIA     +  +  ++ R+D+ALY AK++GR+R+
Sbjct: 409 IGIAVMLASDIHVEAVLSRSDRALYRAKEAGRDRI 443


>gi|307721927|ref|YP_003893067.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurimonas autotrophica DSM 16294]
 gi|306980020|gb|ADN10055.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurimonas autotrophica DSM 16294]
          Length = 947

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 11/184 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           I  + L+EL  S  +   L+  D L+GL N   F   L             L+I+F D+D
Sbjct: 504 IVQTDLRELETSQAKADYLAYHDPLTGLYNRVNFEEYLKHALVVAHRNTSLLAILFIDLD 563

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK IND  GH +GD+V+  ++ +L        F+ R GG+EF       +    A +  
Sbjct: 564 RFKVINDTLGHDIGDEVLKAVASRLKTTLRESDFISRWGGDEFVVILENLASASDAAIIA 623

Query: 198 DLRKIIENSQINIS-SGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
               IIEN +  I+ +  S+  T S GIA      E   T+I  AD A+Y+ K++G+N  
Sbjct: 624 S--NIIENLEEPINVAQHSLITTASIGIALYPENGEDSHTLIKHADSAMYLTKETGKNNF 681

Query: 256 VCFS 259
             ++
Sbjct: 682 RYYT 685


>gi|217971522|ref|YP_002356273.1| diguanylate cyclase [Shewanella baltica OS223]
 gi|217496657|gb|ACK44850.1| diguanylate cyclase [Shewanella baltica OS223]
          Length = 340

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 10/179 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL  +  ++  LS  D L+ + N   F   L          N  L+++  DID+FKQ ND
Sbjct: 161 ELAEANRQLEILSNTDGLTNIGNRRLFDMMLQTEWSRGQRSNSSLALIMLDIDHFKQFND 220

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           ++GH  GD  +  L+  L          V R GGEEF        +Q     A  + ++I
Sbjct: 221 HYGHLAGDDCLKQLASTLSQSGRRAGELVARYGGEEFVILLPNIDKQTVLDTAQHIHQLI 280

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +   I  ++     +T+SAG+A  +  +++    ++ +AD ALY AK +GRN +   ++
Sbjct: 281 QAIAIPHANTDLGIVTVSAGVAYLQPSNQQSPLELVRQADAALYRAKSAGRNCIRVMNE 339


>gi|115358604|ref|YP_775742.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           AMMD]
 gi|115283892|gb|ABI89408.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           AMMD]
          Length = 516

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQIND 144
              +   I  L+R D L+GL N     + L              L++++ D+D FK IND
Sbjct: 331 RRRAEQHIRHLARHDALTGLPNRHELHAELRRRLAHRPRMPSPALAVMYLDLDGFKAIND 390

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD+V+  ++++L           R+GG+EF  A   ++ Q  +ILA  + + I 
Sbjct: 391 RFGHQAGDEVLTQVAERLGKTLPPGELAARIGGDEFVVAIDDTTMQACSILAARIIRQI- 449

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++   +S G ++ + IS GIA          +I +AD ALY AK  G+     +S
Sbjct: 450 SAPYTLSIGATVSLGISIGIALDDGHGSPDELIRQADSALYDAKSGGKGIYRFYS 504


>gi|323699469|ref|ZP_08111381.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio sp. ND132]
 gi|323459401|gb|EGB15266.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio desulfuricans ND132]
          Length = 857

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 86/190 (45%), Gaps = 11/190 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           S   +     + +++ + +  D L+GL N + F+  L              ++++ D+D 
Sbjct: 407 SIEDITMRKKAEDQLKRQAFHDPLTGLPNRALFLDHLRMAMERSRRRKHMFAVLYMDLDR 466

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAN 197
           FK +ND+ GH  GD+++  ++  L     +   + R GG+EFA      S  ++A  +A 
Sbjct: 467 FKVVNDSLGHDAGDELLRGVARVLEQCGRSVDTIARFGGDEFAILQEEISAPKDAIAIAR 526

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            + + +   Q     G  +  + S GI  +    +    ++  AD A+Y AK+ G++R  
Sbjct: 527 RILEGVR--QPFTIGGNEVFTSASLGIVLKTDGYDRPEALLRDADTAMYRAKELGKSRFK 584

Query: 257 CFSDIENNTC 266
            F+   ++  
Sbjct: 585 VFNRKMHDQA 594


>gi|268679692|ref|YP_003304123.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617723|gb|ACZ12088.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 458

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 62/213 (29%), Positives = 103/213 (48%), Gaps = 17/213 (7%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           Y+ +      +Y L+  L L  I++ +  L  Y+      EL      +  LS  D L+ 
Sbjct: 254 YVSIKAQTVHDYDLIVKLILGFIALGMIFLWRYL------ELRKYNLELLYLSETDLLTK 307

Query: 112 LLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           + N       L      ++ ++  L ++  DID+FK++ND FGHP+GD+V+  ++  + +
Sbjct: 308 IYNRMKIEKLLLTLTQEAHQKRTFLCVLLLDIDHFKKVNDTFGHPIGDQVLIQMATLIKI 367

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                 F+GR GGEEF      +S +E   +   L++ ++ ++           T+S G+
Sbjct: 368 SLREGDFLGRWGGEEFLMICPNTSLEEGFKIGERLQECVKKAEFPTQQHH----TVSIGV 423

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           A    +E    +I RAD ALY AKKSGRN V  
Sbjct: 424 AMLHEEESAYDVIVRADNALYHAKKSGRNNVCV 456


>gi|15801824|ref|NP_287842.1| hypothetical protein Z2421 [Escherichia coli O157:H7 EDL933]
 gi|15831179|ref|NP_309952.1| hypothetical protein ECs1925 [Escherichia coli O157:H7 str. Sakai]
 gi|168749015|ref|ZP_02774037.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4113]
 gi|168756026|ref|ZP_02781033.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4401]
 gi|168762638|ref|ZP_02787645.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4501]
 gi|168775170|ref|ZP_02800177.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4196]
 gi|168799655|ref|ZP_02824662.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC508]
 gi|189010557|ref|ZP_02807882.2| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4076]
 gi|189403280|ref|ZP_02794434.2| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4486]
 gi|191171038|ref|ZP_03032589.1| sensory box-containing diguanylate cyclase [Escherichia coli F11]
 gi|195938010|ref|ZP_03083392.1| hypothetical protein EscherichcoliO157_16502 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208810988|ref|ZP_03252821.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208816098|ref|ZP_03257277.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820633|ref|ZP_03260953.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209400929|ref|YP_002270401.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4115]
 gi|217329215|ref|ZP_03445295.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. TW14588]
 gi|291282436|ref|YP_003499254.1| hypothetical protein G2583_1690 [Escherichia coli O55:H7 str.
           CB9615]
 gi|300972032|ref|ZP_07171792.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1]
 gi|12515414|gb|AAG56456.1|AE005372_1 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13361390|dbj|BAB35348.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187769266|gb|EDU33110.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4196]
 gi|188016556|gb|EDU54678.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4113]
 gi|188999686|gb|EDU68672.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4076]
 gi|189356778|gb|EDU75197.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4401]
 gi|189361535|gb|EDU79954.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4486]
 gi|189367032|gb|EDU85448.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4501]
 gi|189377944|gb|EDU96360.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC508]
 gi|190908770|gb|EDV68358.1| sensory box-containing diguanylate cyclase [Escherichia coli F11]
 gi|208724494|gb|EDZ74202.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208732746|gb|EDZ81434.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740756|gb|EDZ88438.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209162329|gb|ACI39762.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. EC4115]
 gi|209771348|gb|ACI83986.1| hypothetical protein ECs1925 [Escherichia coli]
 gi|209771350|gb|ACI83987.1| hypothetical protein ECs1925 [Escherichia coli]
 gi|209771352|gb|ACI83988.1| hypothetical protein ECs1925 [Escherichia coli]
 gi|209771354|gb|ACI83989.1| hypothetical protein ECs1925 [Escherichia coli]
 gi|209771356|gb|ACI83990.1| hypothetical protein ECs1925 [Escherichia coli]
 gi|217317654|gb|EEC26082.1| sensory box-containing diguanylate cyclase [Escherichia coli
           O157:H7 str. TW14588]
 gi|290762309|gb|ADD56270.1| hypothetical protein G2583_1690 [Escherichia coli O55:H7 str.
           CB9615]
 gi|300309254|gb|EFJ63774.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1]
 gi|320642611|gb|EFX11859.1| hypothetical protein ECO9389_21874 [Escherichia coli O157:H- str.
           493-89]
 gi|320647964|gb|EFX16672.1| hypothetical protein ECO2687_09804 [Escherichia coli O157:H- str. H
           2687]
 gi|320653567|gb|EFX21672.1| hypothetical protein ECO7815_06847 [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320659156|gb|EFX26748.1| hypothetical protein ECO5905_05446 [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|324011379|gb|EGB80598.1| diguanylate cyclase domain protein [Escherichia coli MS 60-1]
 gi|326340990|gb|EGD64783.1| hypothetical protein ECF_03538 [Escherichia coli O157:H7 str. 1125]
 gi|326343228|gb|EGD66995.1| hypothetical protein ECoA_02665 [Escherichia coli O157:H7 str.
           1044]
          Length = 430

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 258 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|325925953|ref|ZP_08187320.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
 gi|325543618|gb|EGD15034.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
          Length = 469

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 92/198 (46%), Gaps = 14/198 (7%)

Query: 71  LVIISITISLLLG--YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE- 127
           +V+ ++  +LLLG        L+ +  +  ++S  + +D L+G+ N  AF   L    + 
Sbjct: 269 IVVAALGCTLLLGVGIWLDLQLRRMHRNEAKLSTEAWVDALTGIANRRAFDHRLSRALQD 328

Query: 128 ------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEF 180
                  LS++  D+D+FK  ND +GH  GD  +  ++  +            R GGEEF
Sbjct: 329 AVRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCSRRSEDLAARYGGEEF 388

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKE---PISTI 236
                 +    A  LA+ +R  +    +   S P S H+T+S G A     E     + I
Sbjct: 389 GMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGAATFEPGEAPLSPNAI 448

Query: 237 IYRADQALYVAKKSGRNR 254
           ++ AD ALY AK+ GRNR
Sbjct: 449 VHDADSALYRAKQKGRNR 466


>gi|288942323|ref|YP_003444563.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Allochromatium vinosum DSM 180]
 gi|288897695|gb|ADC63531.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Allochromatium vinosum DSM 180]
          Length = 861

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 11/180 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQ 141
            + +L  S +R+  L+  D L+GL N           +     +    ++ F D+D FK 
Sbjct: 282 DITDLKNSQSRLENLAHYDVLTGLPNRLLLGYRLRQALDDAQRHERLAAVCFLDLDNFKL 341

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND+ GH  GD+++  +  +L     +   V RLGG+EF         QE   L N L +
Sbjct: 342 VNDHHGHETGDRLLIDIGRRLRDTLRSNDTVARLGGDEFVILLNDLRNQE--ELDNVLVR 399

Query: 202 IIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +++     +      I IT+S G+           T++  ADQA+Y AK+ GRNR   F 
Sbjct: 400 LLDGVAHPVRIDALQIVITVSVGVTIYPLDDHDPDTLLRHADQAMYQAKQMGRNRYQLFD 459


>gi|148360603|ref|YP_001251810.1| GGDEF domain-containing protein [Legionella pneumophila str. Corby]
 gi|296106331|ref|YP_003618031.1| GGDEF domain protein [Legionella pneumophila 2300/99 Alcoy]
 gi|148282376|gb|ABQ56464.1| GGDEF domain protein [Legionella pneumophila str. Corby]
 gi|295648232|gb|ADG24079.1| GGDEF domain protein [Legionella pneumophila 2300/99 Alcoy]
          Length = 516

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 90/185 (48%), Gaps = 15/185 (8%)

Query: 87  GSILKELFISYNRISQLS-------RIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
            + L+E   +   I  L          D L+GL N  ++   +          +  LS+ 
Sbjct: 332 QARLQESEQNAEEIKNLLAFQKYRINHDSLTGLPNRESYEEHILDSFQRWKRSSSALSLA 391

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK+INDNFGH  GDKV+  ++        T  F+ R+GGEEF      +S +EA
Sbjct: 392 VCDIDHFKRINDNFGHLAGDKVLKKVAMIFKSSIRTVDFIARIGGEEFVFIFEQTSSKEA 451

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             +   LRK++E+          + +T+S G+     K+ I ++  RAD A+Y AK +GR
Sbjct: 452 FGILEKLRKLVEDCLFYYRE-KKVDVTVSFGLTTVTEKDDIESLFMRADNAMYKAKNAGR 510

Query: 253 NRVVC 257
           NRV  
Sbjct: 511 NRVEI 515


>gi|27366393|ref|NP_761921.1| Two component response regulator [Vibrio vulnificus CMCP6]
 gi|27362594|gb|AAO11448.1| Two component response regulator [Vibrio vulnificus CMCP6]
          Length = 304

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 3/177 (1%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           ++ + L     ++ +++  D L+GL+N        G  +   +++ FDID FK IND +G
Sbjct: 129 TLQRALIEQNEQLKRMATTDALTGLVNRRYLADMAGKVSGNFALILFDIDDFKTINDQYG 188

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD+V+  +++    V G   +  R GGEEF         + A  LA  ++     S+
Sbjct: 189 HHVGDEVLVRIAEITRRVIGQHGYCARWGGEEFLILLPNFDAKRAYDLAACIQDEFNESK 248

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             + +    H T S G+A          +I +AD A+Y  KKSG+NRVV  S +E+ 
Sbjct: 249 GTLGA---YHFTASFGVACNQGALSFHHVIRQADAAMYQGKKSGKNRVVSSSAMESR 302


>gi|83310427|ref|YP_420691.1| GGDEF domain-containing protein [Magnetospirillum magneticum AMB-1]
 gi|82945268|dbj|BAE50132.1| GGDEF domain [Magnetospirillum magneticum AMB-1]
          Length = 395

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 114/227 (50%), Gaps = 13/227 (5%)

Query: 44  FIANIFLFYIGL---TPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI 100
            IA   L  IGL   +P +  +   + N ++ ++    SL  G+    ++KE   +   +
Sbjct: 158 LIALTALARIGLAWSSPAWDPQSAALANQAMFLLGYVFSLCDGFSFLLLVKE--DADRSL 215

Query: 101 SQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +++ ID L+G+ N + F+              + +S+V  D+DYFK++ND FGH  GD+
Sbjct: 216 LRMATIDQLTGIPNRAHFLDLAEDRRRLCLRSGQAVSVVMMDVDYFKRVNDEFGHSAGDE 275

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  +   L          GRLGGEEFA    G+S   A  +A+ LR I+   ++  + G
Sbjct: 276 VLRRVGCALREHLRDVDVFGRLGGEEFAIVLPGTSLAAAVPVADRLRAILAGLEVETAKG 335

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +  IT+S GIA+      +   +  AD  LY AK +GRN+VV  S+
Sbjct: 336 TT-RITVSMGIADLGGGRSLELAMSEADGRLYRAKAAGRNKVVAVSE 381


>gi|302185958|ref|ZP_07262631.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 828

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           + +  L  +  R+   +  D L+GL N   F + L +            +++F D+D FK
Sbjct: 372 ADISSLKHAQARLDYQAHHDPLTGLPNRILFENRLQAALLHSEESGSLGAVLFLDLDRFK 431

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND+ GHPVGD ++  ++ +L         V RLGG+EF     G     +A  +AN L
Sbjct: 432 HINDSLGHPVGDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQASDAQAIANKL 491

Query: 200 RKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 +    +    ++I+ S G          ++T++  AD A+Y +K  GRNRV  +
Sbjct: 492 LACF--NTPFQAGEHELYISPSIGSCVFPTDGNDVATLVKNADAAMYRSKAKGRNRVERY 549

Query: 259 S 259
           +
Sbjct: 550 T 550


>gi|261253052|ref|ZP_05945625.1| GGDEF family protein [Vibrio orientalis CIP 102891]
 gi|260936443|gb|EEX92432.1| GGDEF family protein [Vibrio orientalis CIP 102891]
          Length = 345

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 69/248 (27%), Positives = 121/248 (48%), Gaps = 10/248 (4%)

Query: 27  FMIYFSIFFSIFIATV--IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           + + F + F + +     +  + +    I +   +   Y    N + + ++ +++ L  +
Sbjct: 99  WSLLFPVLFYLILGRRYGVIASGVGFTIIVMLVMHKTYYNGGLNFAELSVNFSLAYLCIW 158

Query: 85  ISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDY 138
           +S  IL+ +   S   + QL+  D L+G+ N  A I +   Y        LS++  D+DY
Sbjct: 159 LSSHILEVKRKTSVTSLGQLASRDALTGVYNRHALIHNFERYRNESAKVPLSLLILDLDY 218

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND +GH  GD+V+   +  L+  F     V R+GGEEF  A   +  + A   A  
Sbjct: 219 FKNVNDKYGHDAGDRVLVQTA-ALIDSFCDEHLVYRIGGEEFCIALHNTEVKSAMYKAEQ 277

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +R  IE+   N    P I +T S GI +  H + +  ++  AD+ LY AK +GRN+V+  
Sbjct: 278 IRTGIEHYTFNDKENP-IRLTASIGIYQCDHYKCLEDVLREADKELYKAKSNGRNQVMVC 336

Query: 259 SDIENNTC 266
           +  E +TC
Sbjct: 337 NQTECSTC 344


>gi|170690285|ref|ZP_02881452.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia graminis
           C4D1M]
 gi|170144720|gb|EDT12881.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia graminis
           C4D1M]
          Length = 522

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 9/177 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFK 140
            + E   S  ++  L+R D L+GL N       L             + ++++ D+D FK
Sbjct: 327 DVTERRQSEAKVLYLARHDSLTGLANRRELRECLDRILLRSHTRRETRTAVLYLDLDGFK 386

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND  GH  GD+V+  ++ +L        F  RLGG+EFA     ++      +A  + 
Sbjct: 387 QVNDRHGHTAGDEVLETVAARLRQTLRHGEFAARLGGDEFAVIVEEATLSAIVAIAQRVI 446

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + I      +++G +I +  S GIA     EP+ ++I RAD+A+Y AK +G+     
Sbjct: 447 REIAK-PYALTAGGTISLGTSIGIALAEPHEPVDSLIRRADEAMYSAKNAGKGTYRI 502


>gi|146311799|ref|YP_001176873.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter sp. 638]
 gi|145318675|gb|ABP60822.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter sp. 638]
          Length = 410

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 74/174 (42%), Gaps = 11/174 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQ 141
            + E       +   +  D ++GLLN   F       N       ++ S++  D D+FK 
Sbjct: 238 DITEQKRLEQELEHAAMRDSMTGLLNRRQFYRITEQTNPSHLPLQDQFSLLLVDTDHFKN 297

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH  GD+V+  LS  L        FV R GGEEF      +    A  +A  +R 
Sbjct: 298 INDVFGHLKGDEVLISLSRTLEACSRKDDFVFRWGGEEFVILLPRTQLDIAMQVAETIRA 357

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +    I          T+S G+A     E I  +  R D ALY AK  GRN+V
Sbjct: 358 AVARIAIPGLP----RFTVSIGVARHNPDESIDELFKRVDDALYRAKNDGRNKV 407


>gi|91205788|ref|YP_538143.1| response regulator PleD [Rickettsia bellii RML369-C]
 gi|91069332|gb|ABE05054.1| Regulatory components of sensory transduction system [Rickettsia
           bellii RML369-C]
          Length = 457

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 59/191 (30%), Positives = 85/191 (44%), Gaps = 13/191 (6%)

Query: 79  SLLLGYISGSILKELFISYNR--ISQ---LSRIDCLSGLLNHSAFI-------SSLGSYN 126
           S L   I   + ++ +    R  + Q   L+  D L+GL N   F               
Sbjct: 265 SELAARIKTQLRRKQYQDNLRNDLEQSVNLAAKDGLTGLFNRRYFDVHIKQIVEKANKEG 324

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
            KL ++  DID FK +ND +GH  GDKV+   S  L   F     + R GGEEF      
Sbjct: 325 MKLYLLMCDIDNFKHVNDTYGHQAGDKVLITTSRILKNTFRVTDLIARFGGEEFTILLND 384

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALY 245
            +  +A   A  +R  IE+    I      +  T+S G+ E    E I   I R+D+A+Y
Sbjct: 385 INIDQAIYTAERVRVKIESMNFQIDEQEKPLKKTVSIGVTEYKKCESIEEFIERSDKAMY 444

Query: 246 VAKKSGRNRVV 256
            AK +G+N+VV
Sbjct: 445 EAKTTGKNKVV 455


>gi|330950876|gb|EGH51136.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 748

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 51/189 (26%), Positives = 89/189 (47%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
            S L+E       ++ ++  D L+ L N +  ++ L        S  E+ +++F D+D F
Sbjct: 300 QSRLEERERISEELTYIAFHDELTSLFNRAYLMNELTTAFVTRDSRYERATVLFLDLDGF 359

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
           K +ND+ GH  GDK++  ++++L     +   + R+GG+EFA   +G  + + A  +A  
Sbjct: 360 KVVNDSMGHLAGDKLLKAVANRLQTCVRSNDVLARIGGDEFAILLMGKDQPETAVKMAER 419

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           +   +  + I I  G  I I+ S GI            ++  AD A+Y AKK GR R   
Sbjct: 420 IVSQLHTA-IQI-EGQDIFISCSIGIVTAGESHTKPEELLRDADVAMYSAKKQGRGRWNI 477

Query: 258 FSDIENNTC 266
           F+       
Sbjct: 478 FNASMREAA 486


>gi|293608824|ref|ZP_06691127.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829397|gb|EFF87759.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325121409|gb|ADY80932.1| two-component system, PleD related family, response regulator
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 420

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 72/249 (28%), Positives = 116/249 (46%), Gaps = 14/249 (5%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           H   +  +  F +F   +++ AN     +G   F     IL  ++S ++ S   SL L  
Sbjct: 170 HMLYVGLTAAFCVFSLLILWQANCDFIALGRALFGSC--ILGFSISTMLTSRERSLFLNN 227

Query: 85  ISGSILKE-LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDI 136
               + ++ L I  + +  LS+ D L+ + N   F                 L+++F DI
Sbjct: 228 QLAELNEQILRIEASELLHLSQQDALTNISNRRTFDEMFDFFYYRAKQEKRPLAVLFIDI 287

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK  ND +GH +GDKVI+ ++  +        FV R GGEEF      +  Q A  +A
Sbjct: 288 DFFKNYNDFYGHQMGDKVISSIAAAIKNSIRHVDFVARYGGEEFVVLLPKTPAQGAYAVA 347

Query: 197 NDLRKIIENSQINISSG-PSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRN 253
            ++ K IE   I  ++   S H+TIS G         +    +I+ ADQALY AK+ GRN
Sbjct: 348 ANIYKAIERQAIPHAASLVSKHVTISLGFTVYTEGFKVNQEKLIHAADQALYRAKQLGRN 407

Query: 254 RVVCFSDIE 262
           ++  +  +E
Sbjct: 408 QI-YYQPLE 415


>gi|330827759|ref|YP_004390711.1| Gaf domain/GGDEF domain/eal domain-containing protein [Aeromonas
           veronii B565]
 gi|328802895|gb|AEB48094.1| Gaf domain/GGDEF domain/eal domain protein [Aeromonas veronii B565]
          Length = 758

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 90/181 (49%), Gaps = 12/181 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK-LSIVFFDIDYFKQ 141
           LK+      R+   +  D L+ L N +  ++ L         Y     +++F D+D+FKQ
Sbjct: 317 LKQHQELERRLQFDALHDPLTQLPNRALLMNHLNHAMTHYNRYKSPGFAVIFIDVDHFKQ 376

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLR 200
           IND  GH  GD+++  +S +L         V RLGG+EF      S   +    + N + 
Sbjct: 377 INDTLGHSAGDQLLKEVSRRLQTCIRQNDLVARLGGDEFVIYLDSSKSDDDISPVLNRII 436

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
             +  S      G  + IT+S G++    +   IS ++++AD A+Y AK++GR+R+V +S
Sbjct: 437 SRL--SYPFRLLGNELSITVSLGVSSVSEQTSDISQLLHQADLAMYQAKRNGRSRIVSYS 494

Query: 260 D 260
           D
Sbjct: 495 D 495


>gi|229199536|ref|ZP_04326197.1| GGDEF domain protein [Bacillus cereus m1293]
 gi|228583941|gb|EEK42098.1| GGDEF domain protein [Bacillus cereus m1293]
          Length = 351

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 110/230 (47%), Gaps = 18/230 (7%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI---SGSILKE 92
           S+F   + F  N++  +I   P      +L +++S+V + +  S +  YI   S + + +
Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLS----MLFKDMSIVALYLACSSVAAYITFISANYVLQ 179

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
               + ++ Q + ID L+GL N   F   +  +       N+ L ++  DID+FK +ND 
Sbjct: 180 SNELFQKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNDSLCLLLIDIDHFKSVNDT 239

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GHP GD+V+  +   L  V   P  V R GGEEFA                 +R  +E 
Sbjct: 240 YGHPAGDEVLKQIGRILREVSTFPDLVFRKGGEEFALLIPQKGLAYGMRKGEQVRAAVEK 299

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               +  G  I IT+S GI+    ++     I  AD ALY +K++GRN+V
Sbjct: 300 HSFQLLDGTKIKITVSVGISVY--EQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|313202318|ref|YP_004040976.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase [Methylovorus sp. MP688]
 gi|312441634|gb|ADQ85740.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Methylovorus sp. MP688]
          Length = 435

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 11/169 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++ L++ D L+ L N       L            +L+++F D+D FKQIND  GH VG
Sbjct: 266 KMAHLAQHDYLTNLPNRMLLNDRLSQAITLAERGTSQLAVLFMDLDNFKQINDTLGHVVG 325

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINI 210
           D ++  ++ +L+ +      V R GG+EF      S   ++AA++A+ + + +E  + + 
Sbjct: 326 DAILQSVAKRLIELVRKSDTVSRQGGDEFLMLVDESKHGEDAALIASKILRALE--KPHA 383

Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             G  +H+T S GI+   H      T+I  AD A+Y AKK GRN    F
Sbjct: 384 IGGKELHLTASIGISLYPHDGRDAETLINHADSAMYEAKKQGRNNFKFF 432


>gi|300926731|ref|ZP_07142506.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|301326922|ref|ZP_07220214.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|300417307|gb|EFK00618.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|300846393|gb|EFK74153.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
          Length = 430

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 80/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E  +   ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 258 DITEQKLLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|225872576|ref|YP_002754031.1| bacterial signalling protein N terminal repeat/GGDEF/EAL domain
           protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793352|gb|ACO33442.1| bacterial signalling protein N terminal repeat/GGDEF/EAL domain
           protein [Acidobacterium capsulatum ATCC 51196]
          Length = 698

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 59/217 (27%), Positives = 103/217 (47%), Gaps = 13/217 (5%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLS 110
           G+T  +    I++ +L+++ I++ IS+L   L   +  +   L  +   +  L+  D L+
Sbjct: 218 GMTHGWLAALIILFSLAVLTIALIISVLDLRLELRTAVLATSLADANEELQFLALHDALT 277

Query: 111 GLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            L N + F   L              +++F D+D FKQIND +GH VGD ++   + ++ 
Sbjct: 278 KLPNRALFEDRLRQEVEIARREQTAFAVLFLDLDGFKQINDAYGHHVGDLLLVEAAGRIC 337

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   + RLGG+EF   A      EAA LA+ L  +++N      +   + I++S G
Sbjct: 338 ASVRARDTLARLGGDEFVLLAAIKEPSEAANLADKLVSLLQN--PFHVAELDLQISVSIG 395

Query: 224 IAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           IA    ++     ++  AD A+Y AK  GR+    F 
Sbjct: 396 IAIFHGRDRDARDLVKHADAAMYHAKALGRSGYCFFE 432


>gi|261856801|ref|YP_003264084.1| diguanylate cyclase [Halothiobacillus neapolitanus c2]
 gi|261837270|gb|ACX97037.1| diguanylate cyclase [Halothiobacillus neapolitanus c2]
          Length = 847

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 11/179 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             +     +   + Q++  D L+ L N + F   L             L++ + D+D FK
Sbjct: 663 QDITTQKQAQAAVEQMAHYDALTQLPNRALFFDRLRMVLTQSKRNKRPLALFYMDLDGFK 722

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            +ND+ GH  GD ++  ++D+L  +      V RLGG+EF        + ++A  +A ++
Sbjct: 723 HVNDSLGHQAGDLLLIAVADRLRQIVRASDTVARLGGDEFTVILPDLRQPEDAIKVAENI 782

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            + IE  Q  +  G  + I IS GI            ++  ADQA+Y AK++G+N    
Sbjct: 783 IQSIE--QPFMIEGRIVEIGISIGITHCVENRFKEDELVQLADQAMYEAKQAGKNTYRV 839


>gi|119897781|ref|YP_932994.1| putative signaling protein [Azoarcus sp. BH72]
 gi|119670194|emb|CAL94107.1| conserved hypothetical signaling protein [Azoarcus sp. BH72]
          Length = 1089

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 99/222 (44%), Gaps = 12/222 (5%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSG 111
           + L  ++    +L   +SL  I      +  +I+  + + E       + Q +  D L+G
Sbjct: 603 VTLRTYHKDGQLLWNEISLASIRDAQGEVSHFIAIFNDVTERVRYEAELEQQATHDALTG 662

Query: 112 LLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           L N +     +             ++++  D+D FK IND+ GH  GD ++   + +L  
Sbjct: 663 LANRNLLNDRMQRAIIRAARDGHAVAVMLLDLDRFKLINDSLGHAAGDALLQETARRLSA 722

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAG 223
                  V RLGG+EF       S ++AA       K++E+ ++  + +G  I  T S G
Sbjct: 723 SVRRGDTVARLGGDEFMVVMSDMSAEDAAAALAA--KVLESLAEPMLLNGREIVATGSIG 780

Query: 224 IAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           ++      E  +T++  AD A+Y AK+ GRNR   ++   N 
Sbjct: 781 VSLYPRDGEAAATLLKHADVAMYRAKELGRNRFQFYAPEMNE 822


>gi|119470705|ref|ZP_01613373.1| GGDEF family protein [Alteromonadales bacterium TW-7]
 gi|119446175|gb|EAW27453.1| GGDEF family protein [Alteromonadales bacterium TW-7]
          Length = 524

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 80/169 (47%), Gaps = 8/169 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHS---AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           L     ++   ++ D L+   N       +S L       +I+  DID+FK++ND FGH 
Sbjct: 359 LQTQIGQLKHDAQTDPLTNTHNRRSLNGLLSQLMLKQTPFAILEIDIDFFKRVNDTFGHD 418

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+ +  L+D +  +      V R+GGEEF         Q A  +A  LR  +E +Q+ 
Sbjct: 419 KGDEALKVLADIIKKISRKGDIVSRIGGEEFLLVLPHEDSQSALKIAERLRTTVETTQME 478

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
                   IT+S GIA    H   I  +   AD+ALY AK+ GRNR V 
Sbjct: 479 TIG----FITVSIGIATWPTHSNNIDQVYKCADKALYYAKEHGRNRCVV 523


>gi|146305544|ref|YP_001186009.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas mendocina ymp]
 gi|145573745|gb|ABP83277.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas mendocina ymp]
          Length = 557

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 9/181 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDID 137
           +S   L+ +   + ++ + +  D L+GL N                  N  L++   D+D
Sbjct: 366 LSEERLRTISNLHEQLREQALCDPLTGLYNRRYLDEFFSRELARAQRENLPLALALIDLD 425

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK++ND  GH VGD V+  ++  L+    +   V R+GGEEF     G    EA     
Sbjct: 426 HFKRLNDECGHLVGDDVLKAVAKHLLDNLRSTDAVFRIGGEEFLLILPGVDPVEACERLQ 485

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
           ++   +    I    G    +T+SAG+A    +   +  +++ AD ALY AK+ GRNRV 
Sbjct: 486 NICSQLAGQSIATRGGDQ-QVTLSAGLAHWPQQGVVLEELLHAADAALYQAKRGGRNRVC 544

Query: 257 C 257
           C
Sbjct: 545 C 545


>gi|329851357|ref|ZP_08266114.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
 gi|328840203|gb|EGF89775.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
          Length = 717

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 13/188 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDY 138
           G  L E   +  +I++L+  D L+GL N + F   +           + + ++   D+D 
Sbjct: 277 GMDLTEQKQAEAQIARLAHYDPLTGLANRTLFTQDMEKALARAARRRHGQTALHCLDLDR 336

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND++GH  GD+++  +  +L         V R+GG+EFA         +A  LA+ 
Sbjct: 337 FKAINDSYGHLAGDELLIEVGRRLRKCVRRGDVVARMGGDEFAIIQEIERAGDAQGLASR 396

Query: 199 LRKIIENSQINIS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           +   +E  Q+  + +   + + +S GIA      + +  ++ RAD ALY  K  GRN   
Sbjct: 397 V---VEAMQVPFTLTNAQVEVGVSIGIALSPDDAQDMHNLMSRADMALYRVKSEGRNNWC 453

Query: 257 CFSDIENN 264
            +S   + 
Sbjct: 454 FYSAEMDE 461


>gi|294979306|pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
           C-Di-Gmp
 gi|294979307|pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
           C-Di-Gmp
          Length = 459

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 14/190 (7%)

Query: 81  LLGYISGSILKELFISYNR--ISQ---LSRIDCLSGLLNHSAFISSLGSY-------NEK 128
           L   +   I ++ +  Y R  +     L+  D L+GL N       L S         + 
Sbjct: 261 LSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDP 320

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +S +  DID+FK+IND FGH +GD+V+   + +L           R GGEEF      ++
Sbjct: 321 VSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTA 380

Query: 189 EQEAAILANDLRKIIENSQINISSGPS-IHITISAGI-AERCHKEPISTIIYRADQALYV 246
             +A  +A  +R  +  S   ++ G   +++TIS G+ A     +    ++ RAD+ +Y 
Sbjct: 381 LADALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSATAGEGDTPEALLKRADEGVYQ 440

Query: 247 AKKSGRNRVV 256
           AK SGRN VV
Sbjct: 441 AKASGRNAVV 450


>gi|317127772|ref|YP_004094054.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus cellulosilyticus DSM 2522]
 gi|315472720|gb|ADU29323.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus cellulosilyticus DSM 2522]
          Length = 1016

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 51/201 (25%), Positives = 88/201 (43%), Gaps = 23/201 (11%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS 130
           +  ++G I+   + E      +I  L+  D L+GL N       L         Y+ KL 
Sbjct: 558 VIRIIGSITN--ISEKKQQEKQIMHLAFHDGLTGLPNRRLLRDRLEIAMAQADRYHFKLG 615

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM----------FVGRLGGEEF 180
           I+  D+D FK IND  GH  GD++I  +++ L +   +             V RLGG+EF
Sbjct: 616 ILMIDLDRFKVINDTLGHHAGDELIQKVAEVLELTIRSSDTISRGKQENATVARLGGDEF 675

Query: 181 AAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIY 238
                  +E  E   +AN + +  +  +        +  + S GI+          ++  
Sbjct: 676 IILLTHITEVTELQTVANRIIEKFK--EPFFIQNHDVFTSASIGISVYPDNGRDFDSLTG 733

Query: 239 RADQALYVAKKSGRNRVVCFS 259
            AD A+Y AK++G+N++  +S
Sbjct: 734 CADIAMYRAKENGKNQMEIYS 754


>gi|172065325|ref|YP_001816037.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
 gi|171997567|gb|ACB68484.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
          Length = 506

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 12/191 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFD 135
           ++    L++       ++ L+R D L+GL N  A  ++L    E+L        S++F D
Sbjct: 312 WLLAFALRDNLRKQTLLTDLTRTDPLTGLHNRRALDAALADEWERLQRGSDGSLSVLFID 371

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
            D+FKQ ND +GH  GD  + FL++ +            R GGEEF A    + E+ A  
Sbjct: 372 ADHFKQYNDRYGHAQGDTALRFLAECIRAHTRRRGDLAARYGGEEFVAVLPDTDERGAQQ 431

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGR 252
           +A  +R  +E ++++         T+S G A   R     +  + ++AD ALY AK+ GR
Sbjct: 432 VAEAIRGAVERNRLDGFDATMPAFTVSIGCATGHRARPPSVHALTHQADLALYAAKRQGR 491

Query: 253 NRVVCFSDIEN 263
           NRV   +D+E+
Sbjct: 492 NRVCV-ADVES 501


>gi|16330004|ref|NP_440732.1| hypothetical protein slr2077 [Synechocystis sp. PCC 6803]
 gi|1652490|dbj|BAA17412.1| slr2077 [Synechocystis sp. PCC 6803]
          Length = 732

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 12/192 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--------KLSIVFFD 135
           Y     +K    S N++S  +  D L+GL N +  +  L             + +++F D
Sbjct: 284 YRLQKEIKLRKASQNQLSYQALHDTLTGLANRALLLQRLEFAGHQIKNNPKSRFALLFID 343

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAI 194
           +D+FK IND++GH VGD ++  ++++L +         RLGG+EF       +E ++A  
Sbjct: 344 LDHFKLINDSWGHSVGDALLIKIAEKLQINLRETDLAVRLGGDEFVIFLESITEIKQAID 403

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
           +A  +  +I            + +  S GI     H      +I  AD A+Y AK +GRN
Sbjct: 404 VAERI--LIHLRLPVQIQAKELFVKASIGIVIGSIHYYEPERLIRDADIAMYQAKNNGRN 461

Query: 254 RVVCFSDIENNT 265
           +   F    + T
Sbjct: 462 QYAVFDPSMHQT 473


>gi|297539263|ref|YP_003675032.1| PAS/PAC sensor-containing diguanylate cyclase [Methylotenera sp.
           301]
 gi|297258610|gb|ADI30455.1| diguanylate cyclase with PAS/PAC sensor [Methylotenera sp. 301]
          Length = 436

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 84/178 (47%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
             + E   S   + + S  D L+G+ N  AF                 LS++  D D+FK
Sbjct: 249 RDITEKRNSTEDLIKASFNDHLTGISNRRAFFEVAGIEFERCKKRPRPLSLLAIDADHFK 308

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND FGH  GD+V+  LS  L         V R+GGEEF+A    +  Q A  +A  +R
Sbjct: 309 KVNDTFGHATGDEVLKHLSAVLQDCVREMDLVARIGGEEFSALLPSTDMQGAIKIAERIR 368

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
             I  S + + +G  I  T+S G++        I  ++  AD+ALY +K  GRNRV  
Sbjct: 369 SSIAESLLEV-NGQKIRYTVSIGVSTVNENVTGIDMLLKIADEALYASKHGGRNRVTA 425


>gi|229515598|ref|ZP_04405057.1| GGDEF family protein [Vibrio cholerae TMA 21]
 gi|229347367|gb|EEO12327.1| GGDEF family protein [Vibrio cholerae TMA 21]
          Length = 372

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 8/176 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L+    ++  LS  D L+GL N    +  L           +    V  DID FK +N
Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH VGDKV+  +++ L   F +   V RLGG+EF      ++      +A  +   I
Sbjct: 253 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETNTAGGVYIAEQVCCAI 312

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   I++ +      ++S G+A      +    ++  ADQA+Y+AK SG+NRV  F
Sbjct: 313 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHELLRAADQAVYLAKNSGKNRVCAF 368


>gi|254448560|ref|ZP_05062019.1| diguanylate cyclase [gamma proteobacterium HTCC5015]
 gi|198261749|gb|EDY86035.1| diguanylate cyclase [gamma proteobacterium HTCC5015]
          Length = 394

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 76/263 (28%), Positives = 118/263 (44%), Gaps = 31/263 (11%)

Query: 18  NLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY-----------GLEYILV 66
           N+ S   H   I F +F+ +  A V    N    ++   P              + + +V
Sbjct: 133 NITSALAHVKKIRF-LFWCVVTALVCLGINDLFGWLEHAPLLERSLYQPDGTPHILWWVV 191

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSL 122
           + +  +I+S  I L L  +   + +E     N   ++S ID L+ L N S+FI      L
Sbjct: 192 QAVMALILSALIYLCLLAVGRWVERE-----NLYREMSTIDGLTRLTNRSSFIKRGDEEL 246

Query: 123 GSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                        L+ +  D+D+FK IND +GH  GD+V+   S  ++        VGR 
Sbjct: 247 ARLQRLPSDPSPTLACIMLDLDHFKSINDTWGHHAGDEVLVVASKIMMDNARQYDEVGRY 306

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPI 233
           GGEEFA          A  +A  LRK I  + + +  G +I  T S G+A    +  E +
Sbjct: 307 GGEEFAILLPSVDLALAEKIAERLRKKISEAVVKV-DGKAIQFTASLGVASFPSEGLENM 365

Query: 234 STIIYRADQALYVAKKSGRNRVV 256
           + ++  AD ALY AK+ GRN+VV
Sbjct: 366 NDLLKAADAALYEAKEGGRNQVV 388


>gi|197116481|ref|YP_002136908.1| HAMP/PAS domain-containing diguanylate cyclase lipoprotein
           [Geobacter bemidjiensis Bem]
 gi|197085841|gb|ACH37112.1| diguanylate cyclase lipoprotein, HAMP, PAS and PAS
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 804

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 11/182 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           +    + E  ++  R+  L+  D L+ L N   F   L         Y   ++++F D+D
Sbjct: 621 VIFRDITERKLAKARLETLAHYDSLTSLPNRVLFFDRLRHAVFEAKRYQHPMALMFLDLD 680

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA 196
            FKQ+ND  GH  GD V+     +L         V R+GG+EF       +  ++A+++A
Sbjct: 681 SFKQVNDRLGHAAGDAVLVEAGYRLRECVRACDMVARMGGDEFTIILTKMADRRDASLVA 740

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
             + +        +  G S  + +S GI         +  ++  AD A+Y AK+ G+N  
Sbjct: 741 ERVLEAFAL--PFLVEGESAQVGVSIGICVYPDCDADLDGMVRYADYAMYQAKQDGKNVY 798

Query: 256 VC 257
             
Sbjct: 799 RF 800


>gi|170720802|ref|YP_001748490.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas putida
           W619]
 gi|169758805|gb|ACA72121.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida W619]
          Length = 796

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 94/184 (51%), Gaps = 13/184 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSI 131
           +L  GY++   + +L      +  LS  D L+G+ N   F   L          +++L++
Sbjct: 614 TLWHGYLT--DISDLKGVEEDLRTLSVTDALTGIHNRRYFQERLKAELDRAQRDDQELAV 671

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK+IND +GH VGD V+  L  ++           RLGGEEF     GS+ ++
Sbjct: 672 IMLDIDHFKRINDQYGHAVGDHVLRSLCQRIGQRLRRTDVFCRLGGEEFMVLCPGSNAEQ 731

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A +LA +L + + N  ++        +T S G+A     E    ++ RAD  +Y AK++G
Sbjct: 732 ARLLAMELWQGVRNLPVDGVG----KVTASFGVAGWRPGEGADALLLRADAGVYAAKQAG 787

Query: 252 RNRV 255
           R+RV
Sbjct: 788 RDRV 791


>gi|157370758|ref|YP_001478747.1| diguanylate cyclase [Serratia proteamaculans 568]
 gi|157322522|gb|ABV41619.1| diguanylate cyclase [Serratia proteamaculans 568]
          Length = 500

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 120/247 (48%), Gaps = 19/247 (7%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           P   +++ ++ FS+F   +  +  +++ +  L    GL   +  NL + ++  T+S+ LG
Sbjct: 247 PMPILLWLAMSFSLFSTMIAVL--VYVLWCHLAIDLGL---ITTNLDMKMLQNTVSMRLG 301

Query: 84  --------YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSI 131
                       S+         R+  ++  D L+ +L  SAF+      +    E++ I
Sbjct: 302 VALLALGPIAVASMNFARNALLQRLEHVANHDALTHVLTRSAFMQRGTRLVSQKGERICI 361

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DIDYFK IND FGH  GD  +   +  +          GR+GGEEFA  A  + +Q+
Sbjct: 362 MMLDIDYFKSINDRFGHAGGDAALLSFTRAITGDLRDNDLFGRMGGEEFAIVAPIAQQQD 421

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKK 249
           A  LA  LR  +E   IN+ +G ++ IT+S G+        + +  ++  AD A+Y AK 
Sbjct: 422 ALSLAERLRHRVEIESINMPAGAALQITVSIGMVTCIGGSGQNLDNLLKIADLAVYKAKN 481

Query: 250 SGRNRVV 256
           SGRNRV 
Sbjct: 482 SGRNRVA 488


>gi|26990063|ref|NP_745488.1| GGDEF domain-containing protein [Pseudomonas putida KT2440]
 gi|24984989|gb|AAN68952.1|AE016526_12 GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 381

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 67/261 (25%), Positives = 119/261 (45%), Gaps = 27/261 (10%)

Query: 25  HTFMIYFSIFFSI-FIATVIFIANIFLFYIGLTPFYGLEYILVENLSL------------ 71
            T ++ F++  S+  ++      N+ L  +GL       ++L++  +L            
Sbjct: 118 QTLIMLFAVGMSVSAVSCYSSYRNMTLVSMGLVLLPSTGWLLLQPSTLQQGIALAVLVFA 177

Query: 72  -VIISITISLLLGYISGSILKELFISYNRISQLSR-IDCLSGLLNHSAFISSLGSYNEK- 128
             ++S T SL     +   LK      +R++ ++   D L+GL N  AF  +  + + + 
Sbjct: 178 WFVVSATQSLSSALTTAWRLKHEMQRAHRLAMVASCTDELTGLNNRRAFFDNASAQHVRC 237

Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                 ++++  D+D+FKQIND FGH  GD+V+  +   +          GRLGGEEFA 
Sbjct: 238 RDAGTFMAVLMLDVDHFKQINDTFGHAAGDQVLQRIGAAISASLRDNDIAGRLGGEEFAI 297

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRAD 241
               +    A  +A  LR +I   ++N        +T S G+A  +     +  ++  AD
Sbjct: 298 LLPNTPPDTAIEVAERLRALIAKLRVN----DEHPVTASIGLAFAKAPATELGALLSSAD 353

Query: 242 QALYVAKKSGRNRVVCFSDIE 262
            A+Y++K SGRNRV      +
Sbjct: 354 SAMYLSKVSGRNRVTVAEPEQ 374


>gi|194425990|ref|ZP_03058546.1| sensory box-containing diguanylate cyclase [Escherichia coli B171]
 gi|218553900|ref|YP_002386813.1| putative diguanylate cyclase [Escherichia coli IAI1]
 gi|218694916|ref|YP_002402583.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein
           [Escherichia coli 55989]
 gi|260843689|ref|YP_003221467.1| putative diguanylate cyclase [Escherichia coli O103:H2 str. 12009]
 gi|260855040|ref|YP_003228931.1| putative diguanylate cyclase [Escherichia coli O26:H11 str. 11368]
 gi|260867789|ref|YP_003234191.1| putative diguanylate cyclase [Escherichia coli O111:H- str. 11128]
 gi|293414667|ref|ZP_06657316.1| ydaM protein [Escherichia coli B185]
 gi|194416045|gb|EDX32311.1| sensory box-containing diguanylate cyclase [Escherichia coli B171]
 gi|218351648|emb|CAU97363.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein
           [Escherichia coli 55989]
 gi|218360668|emb|CAQ98229.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein
           [Escherichia coli IAI1]
 gi|257753689|dbj|BAI25191.1| predicted diguanylate cyclase [Escherichia coli O26:H11 str. 11368]
 gi|257758836|dbj|BAI30333.1| predicted diguanylate cyclase [Escherichia coli O103:H2 str. 12009]
 gi|257764145|dbj|BAI35640.1| predicted diguanylate cyclase [Escherichia coli O111:H- str. 11128]
 gi|291434725|gb|EFF07698.1| ydaM protein [Escherichia coli B185]
 gi|320186795|gb|EFW61516.1| hypothetical protein SGF_01001 [Shigella flexneri CDC 796-83]
          Length = 410

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 238 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 296

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 297 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 356

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 357 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 407


>gi|190893128|ref|YP_001979670.1| urease-associated protein [Rhizobium etli CIAT 652]
 gi|190698407|gb|ACE92492.1| probable urease-associated protein [Rhizobium etli CIAT 652]
          Length = 282

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 80/232 (34%), Positives = 110/232 (47%), Gaps = 2/232 (0%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           + F +  S    I    ++ +    L + GL P      I    +   ++  T+  +L  
Sbjct: 17  YLFALRMSFVAVILSGVILALTIPPLGFFGLLPMTLSHAIGFGAVFSWLVGGTVCGMLSL 76

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQIND 144
            +G  + EL +S     +LSR D LSGLLN  AF  +L    +  S+V FD+D FK IND
Sbjct: 77  AAGFTMHELTLSRAEFEKLSRTDTLSGLLNRRAFTEALDKAEDNASLVIFDVDRFKAIND 136

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD VI  +S  L   F     V RLGGEEF     G  E     +   +R  I 
Sbjct: 137 RFGHACGDAVITAVSAVLRSAFDEMSVVARLGGEEFGVIVSGELEARLKRI-EGVRARIA 195

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  I  + G  I IT+S G+A+         +   AD+ALY+AK  GRNRVV
Sbjct: 196 SGAI-AADGHDIRITVSGGVADLAAGRSKQAVYASADRALYLAKALGRNRVV 246


>gi|209549574|ref|YP_002281491.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535330|gb|ACI55265.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 417

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 61/189 (32%), Positives = 90/189 (47%), Gaps = 12/189 (6%)

Query: 89  ILKELF-ISYNRIS--QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           IL+EL   + +RI   Q +  D L+  +   AF             +   LS + FDID+
Sbjct: 154 ILQELAGAAMDRIELVQSAATDSLTEAMTRRAFKQEADQLISLALRHQHDLSCIAFDIDH 213

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++ND +GH  GD V+  ++             GR+GGEEFA        + A  +A  
Sbjct: 214 FKKVNDTYGHAAGDAVLKAVASICKATLRAGDLFGRIGGEEFAVILPHVDREGAFAVAEK 273

Query: 199 LRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           LR  I    I    G S+++T S G  A     + I T++ +AD A+Y AK +GRNR V 
Sbjct: 274 LRAAIAAQPIRGDHG-SLNVTASFGTSALSIVSKEIETLLAQADAAMYQAKHAGRNRCVS 332

Query: 258 FSDIENNTC 266
           +S I  +  
Sbjct: 333 WSSIHADHA 341


>gi|116254441|ref|YP_770279.1| sensory box GGDEF transmembrane protein [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115259089|emb|CAK10200.1| putative sensory box GGDEF transmembrane protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 541

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 59/182 (32%), Positives = 93/182 (51%), Gaps = 10/182 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           +   + ++       +   ++ D L+GL N   F       ++     +  +S+V FD+D
Sbjct: 334 LIDRLTQDRETLVGELRSAAQTDLLTGLYNRRGFEVAASALLTQAEHGSRWISVVLFDLD 393

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK+IND  GH  GD V+  ++      F +   + R GGEEF A    S+  +AAI+A 
Sbjct: 394 HFKKINDVHGHDAGDAVLRHVAGVARENFRSFDLLVRHGGEEFLALLPDSTPDDAAIVAG 453

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNR 254
            +R  IE ++I + SG  + +T S G A R ++        ++ RAD ALY AK SGRN 
Sbjct: 454 RVRLAIEAAEIPLPSGDVLKVTASFGCAGRANEATNRNFEDLVKRADLALYAAKASGRNC 513

Query: 255 VV 256
           VV
Sbjct: 514 VV 515


>gi|170681443|ref|YP_001743835.1| sensory box-containing diguanylate cyclase [Escherichia coli
           SMS-3-5]
 gi|331672870|ref|ZP_08373656.1| putative GGDEF domain protein [Escherichia coli TA280]
 gi|170519161|gb|ACB17339.1| sensory box-containing diguanylate cyclase [Escherichia coli
           SMS-3-5]
 gi|331070091|gb|EGI41460.1| putative GGDEF domain protein [Escherichia coli TA280]
          Length = 430

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 258 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|158334238|ref|YP_001515410.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158304479|gb|ABW26096.1| diguanylate cyclase (GGDEF) domain protein [Acaryochloris marina
           MBIC11017]
          Length = 556

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 12/180 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQI 142
           L +L     ++ QL  +D L+ + N  +F          LG     L+++  D+D FK  
Sbjct: 372 LAQLEEENTQLKQLVNLDALTQVANRRSFDEFIQAKWQQLGEMQAPLAVILADVDCFKLY 431

Query: 143 NDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD+ +  ++  +          V R GGEEF      ++ + AA +A  +  
Sbjct: 432 NDTYGHQAGDQCLQQVAQAMQKCAQRASDLVARYGGEEFVVVLPLTTAESAAQMAETMLN 491

Query: 202 IIENSQINISSGPSIH--ITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
            I+  +I+          +T S G+A       +  +++I  ADQALY AK  GR+RV  
Sbjct: 492 CIKEKKISHDRSTVATKIVTASMGVASVIPTLDQDPTSLIKAADQALYQAKALGRDRVQI 551


>gi|320637245|gb|EFX07071.1| hypothetical protein ECO5101_20565 [Escherichia coli O157:H7 str.
           G5101]
          Length = 430

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 258 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPSQMQHLA-IAQDYSLLLIDTDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|320353887|ref|YP_004195226.1| diguanylate cyclase [Desulfobulbus propionicus DSM 2032]
 gi|320122389|gb|ADW17935.1| diguanylate cyclase [Desulfobulbus propionicus DSM 2032]
          Length = 253

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 56/198 (28%), Positives = 92/198 (46%), Gaps = 13/198 (6%)

Query: 75  SITISLLLGYISG--SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---- 128
           +IT  L++  I+      + L ++   + +L+ +D L+G+ N       L     +    
Sbjct: 41  AITARLVVAQIAKVEEANQSLELANEELRKLTNLDGLTGIANRRYHEDKLHREWRRCQRT 100

Query: 129 ---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAA 184
              L+ +  DID FK+ ND++GH  GD+ +  ++  L          + R GGEEF    
Sbjct: 101 NSSLAAIMIDIDQFKKFNDHYGHVAGDQCLREVATALQKGMRRVSDSLARYGGEEFICLL 160

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIA--ERCHKEPISTIIYRAD 241
              S + A  +A    + I+  +I  ++     I T+S G+A          S +I +AD
Sbjct: 161 PDCSAEAAYKVAELFHQRIDQLKIPHATSQVAPILTVSQGVAAMVPSRDSKASELIRQAD 220

Query: 242 QALYVAKKSGRNRVVCFS 259
           QALY AK  GRNRVV + 
Sbjct: 221 QALYHAKMLGRNRVVIYD 238


>gi|148270329|ref|YP_001244789.1| diguanylate cyclase [Thermotoga petrophila RKU-1]
 gi|147735873|gb|ABQ47213.1| diguanylate cyclase [Thermotoga petrophila RKU-1]
          Length = 258

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 71/182 (39%), Positives = 94/182 (51%), Gaps = 17/182 (9%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
            G I  +IL+E           S  D L+G+L+   F+  L         Y   LSI+  
Sbjct: 77  FGNILTTILRERL-----YRDRSMKDPLTGVLSRWYFMERLEEEAYKSSRYKSPLSIIMC 131

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D D FK+IND FGH  GDK + +L  ++  V      VGR GGEEF  A  G+S +EA I
Sbjct: 132 DADDFKKINDQFGHVAGDKTLNWLGRKMRSVLRKSDLVGRYGGEEFIIALPGTSLEEAKI 191

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +A  LRK +     NI      H+T+S G+AE  + E     I RAD+ALY+AK  G+N 
Sbjct: 192 VAEKLRKAVMEDPENI-----YHVTLSFGVAEYKNGEDPLETIKRADEALYLAKTLGKNS 246

Query: 255 VV 256
           VV
Sbjct: 247 VV 248


>gi|157963461|ref|YP_001503495.1| diguanylate cyclase/phosphodiesterase [Shewanella pealeana ATCC
           700345]
 gi|157848461|gb|ABV88960.1| diguanylate cyclase/phosphodiesterase [Shewanella pealeana ATCC
           700345]
          Length = 789

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 107/241 (44%), Gaps = 22/241 (9%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL------LGYISGSILKE-- 92
           +  FIA I L  + L  F GL Y++  N + +++   + L       L   +  + +E  
Sbjct: 281 SAWFIAGISL--LALPVFLGLIYLMRVNNANLVLQTQVELSSEQQQKLAMQNTQLHEEIS 338

Query: 93  -LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
               S +++   +  D L+ L N +  ++ L            ++ ++F D+D FKQ+ND
Sbjct: 339 KRKESESKLEYQATHDELTNLANRTHGMARLQEMIGRSHVKQTQILLLFIDLDNFKQVND 398

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKII 203
             GH  GD ++   S +L+    T   V RLGG+EF         Q+ A ++A+ +  + 
Sbjct: 399 TVGHHAGDLLLKQASKRLLKSVRTSDIVARLGGDEFLVIVPDIQHQDSAKLVASSILSVF 458

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           E  +          ++ S G++         ST++ RAD ALY  K  GRN    + +  
Sbjct: 459 E--KPFRIEQQEFFVSASIGMSVYPKDGTNASTLLKRADTALYSVKDMGRNGFNFYDEQM 516

Query: 263 N 263
           N
Sbjct: 517 N 517


>gi|332305139|ref|YP_004432990.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172468|gb|AEE21722.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 358

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 70/255 (27%), Positives = 115/255 (45%), Gaps = 18/255 (7%)

Query: 25  HTFMIYFSIFFSI--FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL 82
            T  I  S  F++   I   +   +  +  +  T F   EYI + ++ LV +     + +
Sbjct: 105 ATAGISVSALFALSPRIRFALLNLSFLMMPVMFTGFLTEEYIPLASMMLVFLLYISGIGI 164

Query: 83  G-----YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLS 130
                   S  I  EL      +  L++ D L+ + N   F        +       +++
Sbjct: 165 RSNREYRRSFDIEIELEAQRKELETLNQTDALTSIYNRGYFNQHFEDQWQYAMRHELEIA 224

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSE 189
           I+  D+D+FK IND  GH  GD  +  L+  +   V        R GGEEF     G + 
Sbjct: 225 ILLIDVDHFKAINDTHGHLAGDACLVNLAYAINKTVNRAIDVAARYGGEEFVVLLSGCNT 284

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVA 247
           ++A  +A  + + I++ +  +  G  I +T+S GIA      K+  ST+I +ADQALY A
Sbjct: 285 EQARSMAQKIEQAIQDHKF-VHEGTVIPVTVSIGIATTMPKPKQKSSTLIDQADQALYQA 343

Query: 248 KKSGRNRVVCFSDIE 262
           K  GRNR + F++ E
Sbjct: 344 KAQGRNRSIVFTEDE 358


>gi|331014383|gb|EGH94439.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 922

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 11/194 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------ 130
           T ++LL        +EL  +  R+   +  D L+GL N S     L    +         
Sbjct: 469 TANVLLEARVRDRTRELDQANARLQHENSHDSLTGLPNRSQLQHRLRQAWQDFCRNGRQL 528

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            ++F D+D FK IND+ GH  GD ++   +++L         + RLGG+EFA  ++ +  
Sbjct: 529 VVMFIDLDRFKMINDSLGHHCGDILLIQAAERLRSCMREEDLLARLGGDEFAVLSIDTPL 588

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
           Q    +A  +    E  Q  +    +I  + S G+  A+    +  + ++  AD A+Y  
Sbjct: 589 QTGTCIAQRILTAFE--QPFVIDDHTIFSSCSIGVVGADSQFHQEPADLLRDADTAMYRV 646

Query: 248 KKSGRNRVVCFSDI 261
           K  GR+    F+  
Sbjct: 647 KNGGRDSFAVFNQA 660


>gi|323172288|gb|EFZ57925.1| hypothetical protein ECLT68_2938 [Escherichia coli LT-68]
          Length = 430

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 258 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|312945977|gb|ADR26804.1| hypothetical protein NRG857_06880 [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 430

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 258 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|82702833|ref|YP_412399.1| diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis
           ATCC 25196]
 gi|82410898|gb|ABB75007.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Nitrosospira multiformis ATCC 25196]
          Length = 1109

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 50/195 (25%), Positives = 91/195 (46%), Gaps = 11/195 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVF 133
           L   +    + E   S  RI  L+  D L+GL N +         I+      ++L+++F
Sbjct: 653 LRFIVLARDITERKASEQRILHLAHYDSLTGLPNRALLADRMRVAINRAARQAKRLAVLF 712

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEA 192
            D+D FK IND+ GH VGD ++  +++++     +   V R+GG+EF        + ++A
Sbjct: 713 VDLDRFKAINDSLGHDVGDHLLKVVAERMQTSIRSVDTVSRVGGDEFVVLLNEIETAEDA 772

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSG 251
           A +A  +   +  SQ        + +T S GI       +  + ++  AD ++Y AK++G
Sbjct: 773 ARVAQKIIDGL--SQPYQIEKHELLLTGSIGICIYPDNGKEPNILLRNADASMYTAKEAG 830

Query: 252 RNRVVCFSDIENNTC 266
            NR   +S+      
Sbjct: 831 HNRYQFYSEDMTARA 845


>gi|323964516|gb|EGB59991.1| GGDEF domain-containing protein [Escherichia coli M863]
 gi|327254035|gb|EGE65664.1| hypothetical protein ECSTEC7V_1466 [Escherichia coli STEC_7v]
          Length = 410

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 238 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 296

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 297 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 356

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 357 --VSVTKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 407


>gi|292491506|ref|YP_003526945.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291580101|gb|ADE14558.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 1499

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 56/198 (28%), Positives = 90/198 (45%), Gaps = 14/198 (7%)

Query: 80   LLLGYISGSILKELF--ISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS 130
            L  G +   + + L    +   + QL+  D L+GL N + F   L        S     +
Sbjct: 1029 LHFGVLRQRVARLLDASRAEKHVHQLAYHDSLTGLPNRALFRKHLEKLLNRVHSEKRMFA 1088

Query: 131  IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
            I+F D+D FK +ND  GH VGD ++   +D++V    +   V RLGG+EF       S  
Sbjct: 1089 ILFLDLDRFKLVNDTLGHDVGDLLLKAAADRIVHCLRSGDMVARLGGDEFTVILEEISSS 1148

Query: 191  E-AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAK 248
            E A  +A  +  ++  S+     G  ++I+ S GI+      E  ST+I  AD A++ AK
Sbjct: 1149 EVAEGVATKICGVL--SKPFAFLGQEMYISTSIGISLYPNDGEDTSTLIKHADTAMFRAK 1206

Query: 249  KSGRNRVVCFSDIENNTC 266
            + G N    + +      
Sbjct: 1207 EQG-NSYQFYEEGMETAA 1223


>gi|218700060|ref|YP_002407689.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein
           [Escherichia coli IAI39]
 gi|218370046|emb|CAR17822.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein
           [Escherichia coli IAI39]
          Length = 410

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 238 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 296

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 297 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 356

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 357 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 407


>gi|116253890|ref|YP_769728.1| GGDEF domain-containing regulatory protein [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115258538|emb|CAK09642.1| putative transmembrane sensory box GGDEF domain protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 385

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 54/193 (27%), Positives = 96/193 (49%), Gaps = 4/193 (2%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-EK 128
           S + +S    ++L  +   +L     S N++++L+  D L+G LN       L +   + 
Sbjct: 190 SWMAVSAVAFIMLRSM-AMVLMAAERSRNQLTELAHHDPLTGALNRGGLAQHLPALGSQP 248

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            S++  DID+FKQ+ND  GH  GD ++   +     +  +   + R GG+EF A     S
Sbjct: 249 ASLLIIDIDHFKQLNDRHGHAAGDDILRLFASVSRGIMRSDDLLARQGGDEFLAVLKNVS 308

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVA 247
            ++A  +A  +R     + +      ++  T+S G+A R    E    ++ +AD+ALY +
Sbjct: 309 REDAVAIAERIRLAFAAAVMQRPD-LAVFPTLSVGVAARAESGEDFERLMQKADEALYRS 367

Query: 248 KKSGRNRVVCFSD 260
           K+ GRNRV  F +
Sbjct: 368 KREGRNRVEVFGE 380


>gi|56459317|ref|YP_154598.1| intracellular signaling protein [Idiomarina loihiensis L2TR]
 gi|56178327|gb|AAV81049.1| Intracellular signaling protein (GAF,GGDEF,EAL domains) [Idiomarina
           loihiensis L2TR]
          Length = 866

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 12/187 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYF 139
           S ++    + + +   +  D L+GL N   F   L               +++F D+D F
Sbjct: 424 SEIERRKKTESSLFHAAHHDNLTGLPNRILFNERLQQAVAHKRRHPEHHFAVLFVDLDRF 483

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K IND  GH  GD+ +  +S ++         V RLGG+EF       +S  +A  +A  
Sbjct: 484 KNINDTLGHSAGDEFLLEVSKRIGDCVRDNDMVARLGGDEFVILLDTITSIDDAKDVAKR 543

Query: 199 LRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +  + S+    +G   +   S GIAE     +    ++  AD A+Y AK  GR R V 
Sbjct: 544 MIQ--QMSEPFHLNGQEHYSGASIGIAECLEETDSAERLLRDADAAMYQAKGMGRGRYVL 601

Query: 258 FSDIENN 264
           F D  + 
Sbjct: 602 FDDSMHE 608


>gi|330505313|ref|YP_004382182.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328919599|gb|AEB60430.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 429

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 118/283 (41%), Gaps = 35/283 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIF-----LFYIGL 55
           + R     ++ WL  + +  S       +    + +  +A +  +         L    L
Sbjct: 141 LARRYPQGIADWLA-QIHWPSLHGAWMNLAQLSYLAFLLAFIALLMQYLRRPRPLHAAQL 199

Query: 56  TPFYGLEYILVENLSLV-IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
              +GL ++L +   L   + + +SL++  +  ++  E +       Q++  D L+GL  
Sbjct: 200 VGLFGLLWMLPQVFILANALQVMVSLVMLMLVAAVAHEAY-------QMAFRDELTGLPG 252

Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
             A    L     +  I   D+D+FK+ ND  GH VGD+V+  ++ QL  V G      R
Sbjct: 253 RRALNERLQRLGREYVIAMVDVDHFKKFNDTHGHDVGDQVLRLVASQLRKV-GGGGKAYR 311

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS------------------- 215
            GGEEF     G S ++       +R  IE  ++ +    S                   
Sbjct: 312 YGGEEFTLLFPGKSVEQCMPYMEAVRLAIEQYRMQLRDKQSRPSDDREGKQRRAGKAASE 371

Query: 216 IHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           + +T+S G+AER  ++     +I  AD+ALY AK +GRN +  
Sbjct: 372 VSVTVSMGVAERQSEQRNPQEVIKEADKALYSAKAAGRNCIRI 414


>gi|327478672|gb|AEA81982.1| sensory box protein [Pseudomonas stutzeri DSM 4166]
          Length = 332

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 8/179 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139
              + E       + +L+  D L+   N   F             ++  L+ +  DID F
Sbjct: 153 AEDITEKKQLEGELQRLATTDVLTQSSNRRHFFECARIEFERARQFSSSLAFLLLDIDDF 212

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND  GH +GD+V+  ++     V       GR+GGEEFAA   G     A  +A  L
Sbjct: 213 KRINDTHGHQMGDQVLQKVARCGAAVLRQSDLFGRIGGEEFAAVLPGCQPDLAEQIAERL 272

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           ++ IE       +G    +T S G+      +P +S +  RAD A+Y AK+ G+N+V+ 
Sbjct: 273 QREIERVVFTAENGERFRVTASLGLTYLKASDPELSAVFARADAAMYTAKRLGKNQVIV 331


>gi|322417614|ref|YP_004196837.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M18]
 gi|320124001|gb|ADW11561.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M18]
          Length = 465

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 71/169 (42%), Gaps = 17/169 (10%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFG 147
             Y     +S  D L+GL N                 + E  S++  DID+FK  ND +G
Sbjct: 298 RLYEETKSVSLHDPLTGLANRRFLDIQLEKVFELARRHGENQSVIMLDIDHFKIYNDTYG 357

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+++  L+  L        FV R GGEEF A    +    A   A  +R  +E   
Sbjct: 358 HQGGDQLLVRLAGILKAQMRKSDFVFRYGGEEFLALLPDTDLPMACDAAERVRAAVER-- 415

Query: 208 INISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
                     +TIS G+A           ++  AD ALY AK+ GRNRV
Sbjct: 416 -------EAGVTISLGVAAYRDGMPDKEALVRAADAALYRAKERGRNRV 457


>gi|192361895|ref|YP_001983925.1| GGDEF domain-containing protein [Cellvibrio japonicus Ueda107]
 gi|190688060|gb|ACE85738.1| GGDEF domain protein [Cellvibrio japonicus Ueda107]
          Length = 512

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 83/176 (47%), Gaps = 13/176 (7%)

Query: 90  LKELFISYNR--ISQL---SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           + E     NR  + Q    +  D L+ L N  A+             Y   L+I   DID
Sbjct: 333 IMEAEAEQNRTTLEQQRFKALHDALTELPNREAYNERARAEVQRWERYGRPLAIAIIDID 392

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK+INDN+GH  GD+VI  +   +        F  R GGEEF A    +S   A I+  
Sbjct: 393 HFKKINDNYGHQAGDRVIKVIGRSIAKRLREVDFFCRYGGEEFVALMPETSGDNALIVLE 452

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +R  I  +  N    P + ITISAG+ E    + + +   RADQALY AK +GRN
Sbjct: 453 KIRDAIARAAFNYKEQP-LQITISAGLTEFKPGDTLDSAFERADQALYAAKSNGRN 507


>gi|92113067|ref|YP_572995.1| diguanylate cyclase with PAS/PAC sensor [Chromohalobacter
           salexigens DSM 3043]
 gi|91796157|gb|ABE58296.1| diguanylate cyclase with PAS/PAC sensor [Chromohalobacter
           salexigens DSM 3043]
          Length = 438

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 62/177 (35%), Positives = 97/177 (54%), Gaps = 8/177 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYF 139
              + +      R+ +LS  D L+G LN  A++        +     +++S+V FDID+F
Sbjct: 256 ARDITDRKHREYRLQELSTTDSLTGALNRGAYLSCLRSGLEAADHVAQRMSLVIFDIDHF 315

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND +GH  GD V+A + +            GR+GGEEF+    G S  +AA+LA  L
Sbjct: 316 KTINDTWGHAAGDLVLACVGEICRTALRDQDVFGRIGGEEFSLMLAGQSLNDAALLAERL 375

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           RK  E+ ++    G  +  ++S G+AER   E + ++++RAD  LY AK++GRNRV 
Sbjct: 376 RKKFESVRVEFH-GEWLSFSVSFGVAERQTSEGVESLLHRADMGLYAAKRNGRNRVH 431


>gi|167037787|ref|YP_001665365.1| PAS/PAC sensor-containing diguanylate cyclase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116202|ref|YP_004186361.1| diguanylate cyclase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856621|gb|ABY95029.1| diguanylate cyclase with PAS/PAC sensor [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929293|gb|ADV79978.1| diguanylate cyclase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 302

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 8/177 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           + +K +     ++  L+ ID L+G+LN           I     YN K +++F D+D FK
Sbjct: 124 TDVKIIKTELEKLRNLAFIDELTGVLNRRGLDFFIKEKIKETKRYNRKFAVLFIDLDNFK 183

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH +GDKV+  + + L         V R GG+EF              LA  + 
Sbjct: 184 DINDLYGHHIGDKVLKMIGETLKSNLRANDIVARFGGDEFIVIFEIEDINSIEELAQKMI 243

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +IENS      G  I ++ S G      ++    ++ +AD+ +YV+K  G+NR   
Sbjct: 244 TLIENS-FFEEKGQIIKVSASIGGVMIKKEDTPEKLLKKADRLMYVSKAKGKNRYTI 299


>gi|325528405|gb|EGD05542.1| putative diguanylate cyclase [Burkholderia sp. TJI49]
          Length = 521

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 93/210 (44%), Gaps = 15/210 (7%)

Query: 63  YILVENLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSA 117
           Y    + ++ I S    L LG+++ S+L     ++   +   +  L+R   L+GL N   
Sbjct: 298 YAAWYDRAIPIGSAMAVLALGFVALSLLLDVQLRKRHRAETELQALARTGGLTGLDNRRM 357

Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
              +L     +       LS++F D+D+FK+ ND  GH  GD  +A +   +V     P 
Sbjct: 358 LDVTLAREWRRAARSQHALSLLFVDVDHFKRYNDTQGHQAGDDALAAVGHCIVGCLRRPA 417

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--R 227
            +  R GGEEF           A  +A  +R  I +  I   +     +T S G+     
Sbjct: 418 DYAARYGGEEFVVILPDIDTGGAVAIAETIRTSILDLGIRHDASSFGCLTASIGVTTCYP 477

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              + I   +  AD ALY AK++GRNRVV 
Sbjct: 478 ERDDSIQAALKLADDALYRAKEAGRNRVVV 507


>gi|260777494|ref|ZP_05886388.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607160|gb|EEX33434.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 385

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 65/257 (25%), Positives = 118/257 (45%), Gaps = 16/257 (6%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE 67
           F++I    +      +P  F++   +          FI  +F   I      G+ + L  
Sbjct: 136 FIAILANQKGKSTDITPSKFLLSLGLATQGGYNLFRFIWTLFEERIDDFMISGMAHQLAF 195

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
             +L+++      +   ++G ++  ++ +       S  D L+ L N  A    L     
Sbjct: 196 VSTLLMVIFIGFSVTWMLTGRLVATIYDT-------SIKDELTQLYNRRALEELLPKEIA 248

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               + + LS++  DID+FK++ND +GH  GD+V+      L++         R GGEEF
Sbjct: 249 RSSRHKQPLSVLLLDIDHFKKVNDTYGHQAGDRVLRTTGKLLILQTRKDDLSFRYGGEEF 308

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                 +  ++A I+A  LR+ I+ +++  ++  S   T S G+ +   ++   T I RA
Sbjct: 309 LVLLPNTDVEKAVIVAEKLREAIKRARMLPTNVDS--CTASFGVTQFNGEDDWQTAIERA 366

Query: 241 DQALYVAKKSGRNRVVC 257
           DQALY AK++GRN+V  
Sbjct: 367 DQALYSAKENGRNQVTA 383


>gi|297545361|ref|YP_003677663.1| GAF sensor-containing diguanylate cyclase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296843136|gb|ADH61652.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 554

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 16/217 (7%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
            IG      ++  + +  S+ II I +      I  +        Y  +++ S  D L+ 
Sbjct: 344 AIGCLAVLHVDTNVFDEDSVRIIEIIVDQASVAIINA------KRYYEVTKKSITDPLTK 397

Query: 112 LLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
             N   F  +L          +E +S++ FD+D FK IND +GH +GD+V+  ++ ++  
Sbjct: 398 TYNRRYFNDALMENIMRADENSEPVSLIMFDLDNFKLINDTYGHLIGDEVLKEVAKRIKN 457

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
              +   V R GGEEFA      + ++A  +A  +R  + +  +    G  IHITI+ G+
Sbjct: 458 NVRSDDIVARFGGEEFAVILPKLTAEQAYTIAERIRSEVSSKPVKTEKG-DIHITITGGV 516

Query: 225 AERCHK-EPISTIIYRADQALYV-AKKSGRNRVVCFS 259
           A+   K +    +I  AD+ALY   K  GRN++  + 
Sbjct: 517 ADYPRKADSAEKLISHADRALYAGGKSKGRNKIAIYE 553


>gi|213970013|ref|ZP_03398146.1| GAF domain/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
 gi|213925338|gb|EEB58900.1| GAF domain/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
          Length = 964

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 11/194 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------ 130
           T ++LL        +EL  +  R+   +  D L+GL N S     L    +         
Sbjct: 511 TANVLLEARVRDRTRELDQANARLQHENSHDSLTGLPNRSQLQHRLRQAWQDFCRNGRQL 570

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            ++F D+D FK IND+ GH  GD ++   +++L         + RLGG+EFA  ++ +  
Sbjct: 571 VVMFIDLDRFKMINDSLGHHCGDILLIQAAERLRSCMREEDLLARLGGDEFAVLSIDTPL 630

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
           Q    +A  +    E  Q  +    +I  + S G+  A+    +  + ++  AD A+Y  
Sbjct: 631 QTGTGIAQRILTAFE--QPFVIDDHTIFSSCSIGVVGADSQFHQEPADLLRDADTAMYRV 688

Query: 248 KKSGRNRVVCFSDI 261
           K  GR+    F+  
Sbjct: 689 KNGGRDSFAVFNQA 702


>gi|217976674|ref|YP_002360821.1| diguanylate cyclase [Methylocella silvestris BL2]
 gi|217502050|gb|ACK49459.1| diguanylate cyclase [Methylocella silvestris BL2]
          Length = 738

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 66/204 (32%), Positives = 91/204 (44%), Gaps = 22/204 (10%)

Query: 69  LSLVIISITISLLLGYISG---------SILKELFISY--NRISQLSRIDCLSGLLNHSA 117
           L +VI  +   + L Y+ G          + K L +      +   +  D L+GL N   
Sbjct: 519 LGIVITLLATLMALIYLFGKERSVYDSVQMDKRLKLQELARSLEFQASTDPLTGLFNRMK 578

Query: 118 FISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           F  +L         YN  LS+V FDID+FK IND  GH VGD V+  LS           
Sbjct: 579 FDQALAAEILRANRYNRPLSLVLFDIDHFKNINDLHGHQVGDNVLVQLSRIAAAHIRGTD 638

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            + R GGEEF      S+ Q A   A +LR  I  +    +      +T S G+AE    
Sbjct: 639 VLARWGGEEFVILVPESNGQMAYQTAENLRNAIGQAVFEKAGA----VTCSFGVAEYVDG 694

Query: 231 EPISTIIYRADQALYVAKKSGRNR 254
           +   ++I RAD A+Y AK  GRN+
Sbjct: 695 DAAESLISRADAAMYRAKIKGRNQ 718


>gi|320197180|gb|EFW71797.1| Protein YaiC [Escherichia coli WV_060327]
          Length = 371

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|297623985|ref|YP_003705419.1| diguanylate cyclase [Truepera radiovictrix DSM 17093]
 gi|297165165|gb|ADI14876.1| diguanylate cyclase [Truepera radiovictrix DSM 17093]
          Length = 685

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 8/177 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
            ++L +L     R+ Q +R D L+GL N       L         Y   LS+   D+D F
Sbjct: 510 AALLAQLREQAERLEQQTREDALTGLYNRRHLEEVLREAFAAAQRYRHPLSVALIDLDNF 569

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND   H +GD V+   ++       T   V R GGEEF      +  Q A  +   +
Sbjct: 570 KGVNDTLSHQIGDGVLRAAAEVFARFTRTVDIVARYGGEEFVLVMPQTDLQGARAVCERI 629

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R+ IE         P + +T+S G+A+    +    ++  AD  LY AK++G+NRVV
Sbjct: 630 REAIEQYPW-WELHPELQVTVSIGLADDLSVKDHEKLLALADDNLYRAKRAGKNRVV 685


>gi|294341524|emb|CAZ89941.1| conserved hypothetical protein; putative GGDEF domain and membrane
           protein [Thiomonas sp. 3As]
          Length = 412

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 73/259 (28%), Positives = 115/259 (44%), Gaps = 18/259 (6%)

Query: 10  SIWLCHEKNLESF-SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
            +W  H    + F  P T +++    F    AT+++ A  F  + G           + N
Sbjct: 151 GVWGVHASMAQEFGRPVTLLLHGPTLF--IAATLLWRA--FAVFTGNGQALDYREDGLLN 206

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE- 127
             L +  + ++  L  I G +L    +   R+  L+  D L+GLLN  A    L      
Sbjct: 207 ELLTLTLLLVASFLSLIYGGMLMARLV--RRLHDLALKDPLTGLLNRRAAQQLLEREWAS 264

Query: 128 ------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                    ++  DID+FK+IND +GH VGD+V+  L+  L         V R+GGEEF 
Sbjct: 265 YRHKDLPFCVLMIDIDHFKRINDEYGHAVGDRVLTGLATLLREGTRPTDHVARMGGEEFL 324

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRA 240
                +    A   A  LR+   ++   +     + ITIS G+A+   ++     ++ RA
Sbjct: 325 VFLPQTELPSAQAAAERLRQ---HTAAWVLQPEELSITISIGVAQAAAEDSAFDDLLIRA 381

Query: 241 DQALYVAKKSGRNRVVCFS 259
           D+ALY AK +GRNRV    
Sbjct: 382 DRALYAAKSAGRNRVHLAD 400


>gi|78062867|ref|YP_372775.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia sp. 383]
 gi|77970752|gb|ABB12131.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia sp. 383]
          Length = 355

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+GL N       L +   +       LS++  D+D FK  N
Sbjct: 160 QQLLEANLELRRLTHSDGLTGLSNRRYLDEYLAAEWRRGTRERSELSLLMIDVDNFKLYN 219

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD V+  ++  +    G +     R GGEEFA     +S   A +L   +R  
Sbjct: 220 DTYGHVSGDSVLKQIAATIERCLGQSGDLAARFGGEEFAVVMPATSPGAARLLGEKIRLA 279

Query: 203 IENSQINISSGPSIH-ITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +E  ++  +   + + +TIS G A        P + +I  AD+ALY AK  G+NRV  
Sbjct: 280 VEALRLRHAHSSTGNTVTISIGGASIVPIPGLPTTVLIEAADRALYRAKHEGKNRVEI 337


>gi|324329362|gb|ADY24622.1| hypothetical protein YBT020_27000 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 351

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 108/227 (47%), Gaps = 12/227 (5%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           S+F     F  N++  +I   P   L   +   ++L ++  +++  + +IS + + +   
Sbjct: 126 SMFTRWTWF--NVYSLFILAVPLSMLFKDM-SIVALYLVCSSVAAYITFISANYVLQSNE 182

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
            + ++ Q + ID L+GL N   F   +  +       N+ L ++  DID+FK +ND +GH
Sbjct: 183 LFQKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNDSLCLLLIDIDHFKSVNDTYGH 242

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           P GD+V+  +   L  V   P    R GGEEFA             +   +R  +E    
Sbjct: 243 PAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEKVRAAVEKHSF 302

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  G  I IT+S GI+    ++     I  AD ALY +K++GRN+V
Sbjct: 303 QLLDGTKIKITVSVGISVY--EQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|317050266|ref|YP_004111382.1| diguanylate cyclase [Desulfurispirillum indicum S5]
 gi|316945350|gb|ADU64826.1| diguanylate cyclase [Desulfurispirillum indicum S5]
          Length = 643

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 59/188 (31%), Positives = 85/188 (45%), Gaps = 10/188 (5%)

Query: 84  YISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFD 135
           YI  S+ + E     N + + + +D L+GL N                   + + ++  D
Sbjct: 451 YIKQSLSVVETKRLMNTLRESAMVDTLTGLYNRRFLQEHTKQIISGVLRRRKTIGLLLCD 510

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           IDYFKQIND FGH VGD V+   +  +         V R GGEEF    L   + +A  +
Sbjct: 511 IDYFKQINDTFGHDVGDLVLKEAAACMRNSVREADIVIRFGGEEFLILLLDVDQGDAIDV 570

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
           A  +R  I + +I +     I  TIS G++E           I  AD ALY AK++GRN+
Sbjct: 571 AEKIRVKIGDMKITVPDAV-IQKTISIGVSEFPGDTDGFWQAIKFADVALYKAKETGRNK 629

Query: 255 VVCFSDIE 262
            V F    
Sbjct: 630 TVRFEPDM 637


>gi|312112576|ref|YP_003990892.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y4.1MC1]
 gi|311217677|gb|ADP76281.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y4.1MC1]
          Length = 842

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 103/219 (47%), Gaps = 21/219 (9%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L P   +   ++++   VI S+        I    + E      +I   +  D L+ L N
Sbjct: 375 LLPIAYVSTPMIDDNGEVIGSV--------IVFRDITERKKYDEKIKYQAYHDALTDLPN 426

Query: 115 HSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
               I  L         +N +++I++ D+D FK IND+FGH +GD ++  ++ +L ++  
Sbjct: 427 RRYLIEKLKNELKKAEEHNSRIAILYLDLDNFKNINDSFGHVMGDLLLKNVAQRLTMIH- 485

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
              F+ RLGG+EFA    G+      I    ++ +  N  I + +   + IT S GI+  
Sbjct: 486 PDCFIARLGGDEFAVLLSGNDFNIEEIACKTIQSL--NQPIKLEN-KEVFITTSVGISVY 542

Query: 228 C-HKEPISTIIYRADQALYVAKKSGRNRVVCFS-DIENN 264
               +   T+I  AD A+Y AKK G+N+   ++ ++E  
Sbjct: 543 PKDGDDEMTLIRHADMAMYDAKKKGKNQFSFYTAELEQQ 581


>gi|83858472|ref|ZP_00951994.1| GGDEF family protein [Oceanicaulis alexandrii HTCC2633]
 gi|83853295|gb|EAP91147.1| GGDEF family protein [Oceanicaulis alexandrii HTCC2633]
          Length = 333

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 92/187 (49%), Gaps = 9/187 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDY 138
           +   + +L  +  ++ + +  D L+G+ N   F  S+              S+V  DID+
Sbjct: 139 TSQEVNQLRSNLEKVREEAMTDALTGVANRKRFDESMRKSRREADLTGAPFSLVLCDIDH 198

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+ ND +GH  GD++I F+S  L         V R GGEEF      +S Q+A  +A  
Sbjct: 199 FKRFNDTWGHQTGDQIIRFVSACLARYASDHHVVARYGGEEFGIVMPNTSLQDATEIAEK 258

Query: 199 LRKIIENSQINISSGPS--IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +R+++E+ ++   S      +IT+S G+++    E +  +I R D  LY +K+ GRNRV 
Sbjct: 259 IRQVVESKRLLRKSTNEDLGNITVSMGVSQFRPSEVVECLIERCDANLYKSKQKGRNRVT 318

Query: 257 CFSDIEN 263
                 N
Sbjct: 319 VDGAEMN 325


>gi|124267849|ref|YP_001021853.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylibium petroleiphilum PM1]
 gi|124260624|gb|ABM95618.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylibium petroleiphilum PM1]
          Length = 1063

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 13/194 (6%)

Query: 84  YISGSI-LKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFD 135
           YI  SI + +   S  RI  L+  D L+ L N           +       ++++++F D
Sbjct: 607 YIFTSIDISDRKKSEQRIRFLADHDVLTELPNRSLCTERLRMAVQQAQRSGQQVAVMFID 666

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS--EQEAA 193
           +D FK IND+ GH +GD ++  ++ +L+        V RLGG+EF     G    ++   
Sbjct: 667 LDRFKDINDSLGHHIGDGLLRSVARRLLEAVRAGDTVSRLGGDEFVIVLNGVQHIDEVTH 726

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252
           I+   L  +I   Q ++  G  +H++ S GIA        I  ++  AD A+Y AK  G+
Sbjct: 727 IVDQRLIPLIR--QPHLVEGAELHVSCSVGIAVFPDDATDIDELMKHADTAMYQAKAGGK 784

Query: 253 NRVVCFSDIENNTC 266
           +    F+       
Sbjct: 785 DAAEFFTAEMTQRA 798


>gi|300692651|ref|YP_003753646.1| hypothetical protein RPSI07_3033 [Ralstonia solanacearum PSI07]
 gi|299079711|emb|CBJ52388.2| conserved membrane protein of unknown function, putative signal
           transduction, ggdef domain [Ralstonia solanacearum
           PSI07]
          Length = 974

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 10/179 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
           Y     + E   S   +S ++  D L+GL N       L             + +++ D+
Sbjct: 794 YAFVQDVTEAKRSEMELSHMAHFDALTGLANRYELYERLRTALERRQRQPAPMGVLYLDV 853

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAIL 195
           D+FK+IND +GH  GD V+  ++ +L         V RL G+EF        +  +A   
Sbjct: 854 DHFKRINDTYGHAAGDAVLVEVARRLQHAVRRTDTVARLAGDEFVILLDPIDAPDDALHT 913

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRN 253
           A  +   I    + +    ++++T S G+A           ++  AD+ALY AK  GRN
Sbjct: 914 AQKVVAAIR-PPVQLRGDIALNVTASIGVACPGPEAADADAVLREADRALYWAKSRGRN 971


>gi|254457265|ref|ZP_05070693.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207086057|gb|EDZ63341.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 444

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 13/177 (7%)

Query: 90  LKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFK 140
           + +L  +   +  +LS ID L+G+ N S F   L +  ++         S+VF DID+FK
Sbjct: 271 INKLLAARAMKYEELSTIDNLTGIFNRSKFEMELRNEIKRIERYTTDTFSLVFLDIDHFK 330

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD  +  ++  +     +   + R GGEEF      +    A  +    R
Sbjct: 331 NINDKYGHLEGDNTLRDMARLIEKNLRSTDTLARWGGEEFVIVMPLTPLALAKEVTEKFR 390

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           KIIE  Q  +      ++T S GI+E    +   +II RADQA+Y AK +GRNRV  
Sbjct: 391 KIIEQEQFYVVG----NVTCSFGISEFKKGDNAQSIILRADQAMYKAKANGRNRVEV 443


>gi|186893921|ref|YP_001871033.1| diguanylate cyclase [Yersinia pseudotuberculosis PB1/+]
 gi|186696947|gb|ACC87576.1| diguanylate cyclase [Yersinia pseudotuberculosis PB1/+]
          Length = 384

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 118/256 (46%), Gaps = 22/256 (8%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLLLGYI 85
           +  S+F   FI+T+    N   F +   P   +  IL++   N+  +I +I + L+   +
Sbjct: 126 LLLSLFTIFFISTIALSDNFLAFCLHTAP-SAITVILLDDFHNIFRIIFTIMLPLIGFSL 184

Query: 86  SGSILKE-----------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LS 130
              +L+            L     + S LS ID L+ L N     S L +   +      
Sbjct: 185 HHLMLRRTDNFTRKLVDHLSNEREKFSDLSMIDPLTSLYNRRGLESKLETLLSQSPGNHY 244

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  DID+FK  NDN+GH +GD+ +  +S  +     +   V R GGEEF       SE+
Sbjct: 245 VLLLDIDHFKAYNDNYGHTMGDQALVRISAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEE 304

Query: 191 EAAILANDLRKIIENSQINISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAK 248
            A+ LA  +R+ +    I       +   +T+SAGI+     +  +++   AD+ALY AK
Sbjct: 305 YASQLAERVRQRVLGLDIPHVFNHKVSTTVTLSAGISPLQAYDLAASL-KAADEALYRAK 363

Query: 249 KSGRNRVVCFSDIENN 264
           ++GRN +    D  +N
Sbjct: 364 RNGRNNIEFAKDELSN 379


>gi|218704860|ref|YP_002412379.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein
           [Escherichia coli UMN026]
 gi|256018406|ref|ZP_05432271.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein
           [Shigella sp. D9]
 gi|293404870|ref|ZP_06648862.1| hypothetical protein ECGG_00195 [Escherichia coli FVEC1412]
 gi|293433704|ref|ZP_06662132.1| ydaM protein [Escherichia coli B088]
 gi|298380514|ref|ZP_06990113.1| ydaM protein [Escherichia coli FVEC1302]
 gi|307309901|ref|ZP_07589551.1| diguanylate cyclase with PAS/PAC sensor [Escherichia coli W]
 gi|331667740|ref|ZP_08368604.1| putative GGDEF domain protein [Escherichia coli TA271]
 gi|218431957|emb|CAR12842.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein
           [Escherichia coli UMN026]
 gi|291324523|gb|EFE63945.1| ydaM protein [Escherichia coli B088]
 gi|291427078|gb|EFF00105.1| hypothetical protein ECGG_00195 [Escherichia coli FVEC1412]
 gi|298277956|gb|EFI19470.1| ydaM protein [Escherichia coli FVEC1302]
 gi|306909619|gb|EFN40113.1| diguanylate cyclase with PAS/PAC sensor [Escherichia coli W]
 gi|315060595|gb|ADT74922.1| predicted diguanylate cyclase, GGDEF domain signaling protein
           [Escherichia coli W]
 gi|323378843|gb|ADX51111.1| diguanylate cyclase with PAS/PAC sensor [Escherichia coli KO11]
 gi|324117464|gb|EGC11370.1| GGDEF domain-containing protein [Escherichia coli E1167]
 gi|331065325|gb|EGI37220.1| putative GGDEF domain protein [Escherichia coli TA271]
          Length = 410

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 238 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 296

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 297 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 356

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 357 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 407


>gi|77919670|ref|YP_357485.1| signal transduction protein [Pelobacter carbinolicus DSM 2380]
 gi|77545753|gb|ABA89315.1| diguanylate cyclase/phosphodiesterase [Pelobacter carbinolicus DSM
           2380]
          Length = 988

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 53/180 (29%), Positives = 87/180 (48%), Gaps = 9/180 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
            + E   +   I +++  D L+ L N + F   L    E+       L+++F D+D+FK 
Sbjct: 537 DVSEQKKAQRTIHRMAYYDHLTELPNRALFQKELDRRLEEAVGRGHGLALMFLDLDHFKG 596

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND+ GH  GD ++  ++ +L    G   F+ RL G+EF        +  A        +
Sbjct: 597 VNDSLGHAKGDLLLQKIAARLQGCLGREDFLARLNGDEFIFLLTEIDDPVAVKALAGNVQ 656

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            I  S  N+  G  I++  S GIA    H   +  ++ RAD+ALY AK+ GRN +  FS+
Sbjct: 657 RIMASPFNL-DGDEIYVGTSIGIACYPLHGVDVENLMKRADRALYAAKERGRNAIELFSE 715


>gi|330985324|gb|EGH83427.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 584

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 103/241 (42%), Gaps = 15/241 (6%)

Query: 39  IATVIFIANIFLFYI--GLTPFYGLEYILVENLSLVIISITISLLLGYI---SGSILKEL 93
           +A   F    F   +  GL+       +LV +LS++ I++   +L  ++   +  +   L
Sbjct: 74  MAAATFADGSFCGALPDGLSSNGLDRIVLVASLSILGIALFSCILDSHLETRTAVLANSL 133

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNF 146
             +   ++ L+  D L+GL N       +    +K        +++F D+D FK +ND F
Sbjct: 134 TEANQELTHLALHDNLTGLPNRVLLTDRIEQAMKKVSESGGCFALMFMDLDGFKPVNDAF 193

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD ++  ++ +L         + R+GG+EF         Q+A  +A   R++ E  
Sbjct: 194 GHHTGDLLLRQVALRLRNNLHRHDTLARIGGDEFVLLVELHDPQDALAVAT--RQVNEIG 251

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                    + I++S GI     +      ++  AD A+Y  K +G+N    F    N+ 
Sbjct: 252 NPFTIGEHQLQISLSIGICMYPGNGNTQHELLINADAAMYHTKAAGKNGYSFFDASMNSN 311

Query: 266 C 266
            
Sbjct: 312 A 312


>gi|313681776|ref|YP_004059514.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313154636|gb|ADR33314.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 602

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 11/165 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++QL+  D L+ + N   F + L         Y   LSI+  DID+FK++ND +GH +G
Sbjct: 441 KLNQLATQDVLTQVANRFQFDNVLEHSISLAQRYGRTLSILLIDIDFFKEVNDTYGHLIG 500

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  L+  L         + R GGEEF      S    A  LA  LR  +  +     
Sbjct: 501 DDVLKKLAHTLNEGIRKSDVIARWGGEEFVILLPDSELSSALKLAETLRAKVAETDFE-- 558

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             P + IT S G+A     E    ++ R D+ LY AK++GRNRVV
Sbjct: 559 --PVVKITCSIGVARWNEGENSDQLLKRVDEKLYTAKENGRNRVV 601


>gi|307720854|ref|YP_003891994.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978947|gb|ADN08982.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
          Length = 661

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 112/250 (44%), Gaps = 20/250 (8%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL-VIISITISLLLGY 84
           TF+I  ++ FSIF+  ++F A I +    L  +         N  +  I SI  SL + +
Sbjct: 168 TFLI-TALIFSIFL-WILFRAYIIIPLEKLHQYAYYSENPPRNFFIKEIESIRFSLSMTF 225

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
                 K L      +  LS  D LSGL N  + +  L            + +++F D+D
Sbjct: 226 ------KRLKQEQEELYNLSTKDPLSGLYNRLSLVEKLNWLISKGKRDKNEFAMIFLDLD 279

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA 196
            FK IND+ GH  GDK++ ++SD L+        V RLGG+EF         E +   +A
Sbjct: 280 NFKNINDSKGHEFGDKILKYISDILLNATRNNDIVSRLGGDEFVVVLPDYKDENKIVEIA 339

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             L++ +  S           IT S GIA      + + T++  AD A+Y +K+ G+N  
Sbjct: 340 QRLKEKL--STPFKIDNEDYQITASMGIAIYPKDGDNVQTLLKNADIAMYKSKELGKNNF 397

Query: 256 VCFSDIENNT 265
             F+D  N  
Sbjct: 398 QFFTDAINKA 407


>gi|298487212|ref|ZP_07005261.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158236|gb|EFH99307.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 653

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 103/241 (42%), Gaps = 15/241 (6%)

Query: 39  IATVIFIANIFLFYI--GLTPFYGLEYILVENLSLVIISITISLLLGYI---SGSILKEL 93
           +A   F    F   +  GL+       +LV +LS++ I++   +L  ++   +  +   L
Sbjct: 143 MAAATFADGSFCGALPDGLSSNGLDRIVLVASLSILGIALFSCILDSHLETRTAVLANSL 202

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNF 146
             +   ++ L+  D L+GL N       +    +K        +++F D+D FK +ND F
Sbjct: 203 TEANQELTHLALHDNLTGLPNRVLLTDRIEQAMKKVSESGGCFALMFMDLDGFKPVNDAF 262

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD ++  ++ +L         + R+GG+EF         Q+A  +A   R++ E  
Sbjct: 263 GHHTGDLLLRQVALRLRNNLHRHDTLARIGGDEFVLLVELHDPQDALAVAT--RQVNEIG 320

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                    + I++S GI     +      ++  AD A+Y  K +G+N    F    N+ 
Sbjct: 321 NPFTIGEHQLQISLSIGICMYPGNGNTQHELLINADAAMYHTKAAGKNGYSFFDASMNSN 380

Query: 266 C 266
            
Sbjct: 381 A 381


>gi|167951332|ref|ZP_02538406.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 622

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 70/254 (27%), Positives = 119/254 (46%), Gaps = 23/254 (9%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE-----NLSLVIISITISLLL 82
           +I +S+   I +A +I ++ + L  +       +   +VE         V  S+  S  L
Sbjct: 112 LINYSMLLIITVAGMI-VSGLLLARLMSADVQRMIKAMVELAKGNTGVQVPASVMASREL 170

Query: 83  GYISGSI------LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------L 129
             +  ++      L +L  S  R  QL++ D L+GL N   F   L     +       L
Sbjct: 171 KAMGQALIVFRDSLIKLADSQERYQQLAQHDTLTGLPNRLLFHDRLNHALNRANRSKIGL 230

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++F D+D FKQIND FGHP+GD+++A ++  L+        + RLGG+EF     G   
Sbjct: 231 ALLFLDLDRFKQINDAFGHPMGDRLLALVAKDLLEALREEDTIARLGGDEFVVILEGVHG 290

Query: 190 QEAAI-LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVA 247
           ++  I +A  L  +I   +        +HI +S GI+      E ++T++  AD A+Y A
Sbjct: 291 RDHVINVAEKLLAVIGRER--SLDSLQMHIGVSIGISLYPEDGEDVTTLVRNADAAMYQA 348

Query: 248 KKSGRNRVVCFSDI 261
           K  GRN    ++ +
Sbjct: 349 KAKGRNGYAFYTPM 362


>gi|86137571|ref|ZP_01056148.1| GGDEF domain protein [Roseobacter sp. MED193]
 gi|85825906|gb|EAQ46104.1| GGDEF domain protein [Roseobacter sp. MED193]
          Length = 313

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 106/205 (51%), Gaps = 12/205 (5%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           L +++ EN    I  +    L+G +S   ++EL  +Y  +   +  D L+ + N   F+ 
Sbjct: 93  LLHLMNENAIRHIPVLQQEELVGILS---IRELTKAYELLQIEANTDPLTRVSNRRPFLK 149

Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           +L +  E        +S+   D+D+FK+IND +GH  GDK +  LS  L+  F +   VG
Sbjct: 150 TLEAQFEQARQRRMPMSVAMLDVDHFKRINDTYGHDAGDKTLQALSRLLISEFRSIDLVG 209

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           RLGGEEFA     +    A      LR ++++ +I ++    I +T+S G+ E       
Sbjct: 210 RLGGEEFALVFPDTDLVGAYSACERLRAMVQSKEI-LADKHKIRLTVSIGLTESAEHISA 268

Query: 234 S-TIIYRADQALYVAKKSGRNRVVC 257
           +  ++ RAD  LYVAK SGRN+V+ 
Sbjct: 269 APLLLKRADALLYVAKNSGRNKVMA 293


>gi|315283255|ref|ZP_07871488.1| ggdef domain-containing protein [Listeria marthii FSL S4-120]
 gi|313613103|gb|EFR87012.1| ggdef domain-containing protein [Listeria marthii FSL S4-120]
          Length = 357

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 76/258 (29%), Positives = 118/258 (45%), Gaps = 24/258 (9%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           I     K LE F        + +F    IA    + N+ L           E     N+S
Sbjct: 115 ITALFSKRLEKFK------IWGVFILNVIACGFVVVNLHL-------ILAREANYWINMS 161

Query: 71  LVIISITISLLLGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSAFISS----LG 123
              I +TI+L++G I+  ++  +  S   + +  Q S +D L+ L N   F       + 
Sbjct: 162 ---IFVTIALVIGVIAAGLMSNMIKSKQLFQKYEQDSTLDYLTRLSNVRQFDEKINHVMD 218

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
           + + +++++  DIDYFK IND +GH  GD ++  L+  L           R GGEEF+  
Sbjct: 219 AGSRQVTLMLIDIDYFKNINDTYGHDAGDAILKQLAVILKASTTDGSEAFRNGGEEFSIV 278

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQ 242
            L  S +E + +A  +RK  E +   I +G  + ITIS G++        S  +   AD+
Sbjct: 279 LLDCSIEEGSDVAERVRKETEENDFIIPNGQIVKITISVGVSGSKDGANTSEGLFKSADE 338

Query: 243 ALYVAKKSGRNRVVCFSD 260
           ALY AK +GRNRV    D
Sbjct: 339 ALYKAKLTGRNRVCIADD 356


>gi|284043916|ref|YP_003394256.1| diguanylate cyclase [Conexibacter woesei DSM 14684]
 gi|283948137|gb|ADB50881.1| diguanylate cyclase [Conexibacter woesei DSM 14684]
          Length = 351

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 94/222 (42%), Gaps = 19/222 (8%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102
           +F+  +        P  G   + +  LS  ++ + +  LL     ++   L +++  + +
Sbjct: 131 VFVIPLVAIGAPEYPPTGWRSVPLLVLSCALVGVAVQELLAR-ERAVAGRLQLAHAELER 189

Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L   D L+GL N  A  ++              L++   D+D FK  ND  GHP GD ++
Sbjct: 190 LVETDPLTGLPNRRAIETTHRREIAVALRTGRPLTLAIIDLDRFKAYNDAHGHPAGDALL 249

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +SD+          + R GGEEF     G     A  L  +LR  + ++Q        
Sbjct: 250 RTVSDEWSRRLRASDVLTRWGGEEFLLLLPGCDADAADSLVEELRAAVPHAQ-------- 301

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              T SAG+A          +I RAD ALY AK+ GR+R V 
Sbjct: 302 ---TFSAGVAPWQPGMTGDQLIARADAALYRAKREGRDRTVI 340


>gi|238757825|ref|ZP_04619008.1| hypothetical protein yaldo0001_35840 [Yersinia aldovae ATCC 35236]
 gi|238704068|gb|EEP96602.1| hypothetical protein yaldo0001_35840 [Yersinia aldovae ATCC 35236]
          Length = 572

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 13/177 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           +L  +  R+   +R D L+ L N   F              N  L+I+  DIDYFK  ND
Sbjct: 389 KLVKANRRLEIQARTDSLTKLPNRREFKKVLAHEFMRAKRSNSPLAILMIDIDYFKNFND 448

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  L      +   V R GGEEFAA    + +  A ++A  + + I
Sbjct: 449 CYGHISGDACLRLVARALRKSLKRSTDIVARYGGEEFAAILPDTDQNGANLVAEHILQSI 508

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNRV 255
               I         +TIS G+     +        + ++  ADQALY +KK+GRN+ 
Sbjct: 509 RAMGIKHGDSKFRKVTISLGVTVYQSRSHCTVTDQADLVQAADQALYYSKKNGRNQF 565


>gi|170695111|ref|ZP_02886259.1| diguanylate cyclase [Burkholderia graminis C4D1M]
 gi|170139963|gb|EDT08143.1| diguanylate cyclase [Burkholderia graminis C4D1M]
          Length = 397

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 75/277 (27%), Positives = 123/277 (44%), Gaps = 32/277 (11%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFS----------IFIATVIFIANIFLFYIG 54
              F++  L     + +FS    M++ +I F           + +  ++     F     
Sbjct: 112 YFSFVTPNLLVRIYILNFSAGLLMLFTAIRFRKHCNGRIINHVLLWVLLIFGVSFFIRTS 171

Query: 55  LT----------PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
           LT          PF    + ++  LSL ++   + L+L   + S + +       +    
Sbjct: 172 LTTIQPLPHSTAPFARTIFWVLLQLSLALMGAVLGLVLLAAAMSDVIDRLTLERDL---- 227

Query: 105 RIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
             D L+  LN  AF    G       +  L+++ FDID FK IND +GH  GD V+   +
Sbjct: 228 --DSLTETLNRRAFERLAGRRVADRRSYPLTLIAFDIDNFKSINDRYGHAAGDAVLRQFA 285

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R+GGEEF     G+ ++ A  +   LR ++E+S+ +     ++ +T
Sbjct: 286 AILRAAVREKDVVARIGGEEFVLLLPGADDKFAYEIVERLRTVLESSRFDEIE-ATLRVT 344

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            SAGIA     E +  ++ RADQ LY AK++GRNRVV
Sbjct: 345 TSAGIARYRPGEDVGALLARADQLLYAAKRAGRNRVV 381


>gi|149188405|ref|ZP_01866698.1| putative GGDEF family protein [Vibrio shilonii AK1]
 gi|148837623|gb|EDL54567.1| putative GGDEF family protein [Vibrio shilonii AK1]
          Length = 244

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 83/173 (47%), Gaps = 4/173 (2%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNF 146
           + +      ++ + S  D L+ + N   F S+L           ++  DIDYFK++ND +
Sbjct: 73  ISKRHRLELKLRKQSESDPLTQIANRRYFFSTLATITKSTTPHCLLLMDIDYFKKVNDTY 132

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD  +  +  ++  +        R+GGEEFA       E  A  +A  +R  I ++
Sbjct: 133 GHLAGDNTLKEVVARIQDIIRPDDTFARVGGEEFALLLPDIEEHTAYEIAERIRCTIADT 192

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +     +  IT+S GI +  ++E  + I  RAD ALY+AK  GRN+ +  S
Sbjct: 193 PFHYEQ-QTFSITLSVGITQARYQERNNHIFSRADDALYIAKSRGRNQSMVLS 244


>gi|78060223|ref|YP_366798.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. 383]
 gi|77964773|gb|ABB06154.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. 383]
          Length = 780

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 58/189 (30%), Positives = 88/189 (46%), Gaps = 7/189 (3%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHS----AFISSLGSYNEKLSIVFFDIDYF 139
            +S SI+ +   +  RI QL+  D L+GL N +     F +SL   ++ L ++F D+D F
Sbjct: 326 MLSWSIVTQQAEAEARIHQLAHHDSLTGLPNRATFLAEFDASLRRSDKVLGLLFIDLDGF 385

Query: 140 KQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           K IND  GH  GD+V+  + ++L        M +GR+GG+EFA     +    A   A  
Sbjct: 386 KLINDACGHSAGDEVLRQVGERLRGQCPEPGMMLGRIGGDEFAVLLRDTDADRAMGAAAR 445

Query: 199 LRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L   +  +    S      I  S G +    H      ++ RAD ALY AKK+G+     
Sbjct: 446 LVDTL-VAPYAPSPDRQFRIGASIGCVLAPDHGNDGGVLLSRADMALYAAKKAGKGTYRM 504

Query: 258 FSDIENNTC 266
           FS     + 
Sbjct: 505 FSPDMETSA 513


>gi|323699094|ref|ZP_08111006.1| diguanylate cyclase [Desulfovibrio sp. ND132]
 gi|323459026|gb|EGB14891.1| diguanylate cyclase [Desulfovibrio desulfuricans ND132]
          Length = 257

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 116/236 (49%), Gaps = 16/236 (6%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
           +    +   + +A + L  + ++      + +   L+  I+ + I+L   + +   ++ L
Sbjct: 14  WRIFLLQCGLSVAVVVLALLPVSLLPARSWAVAALLTGSILVLAIAL---FCASRFMRLL 70

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNF 146
             + ++I+ L+  D L+GL N + F   L       G Y  +LS+V  D+D FK +ND F
Sbjct: 71  EGANDKIAALTTHDDLTGLPNRNWFFDRLDQEISRAGRYGNRLSLVMVDLDRFKGVNDAF 130

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GHP+GD+ +A ++  L           R GGEEF      +   +AA  A  LR ++E +
Sbjct: 131 GHPLGDQTLAEVARLLAANIRASDVAARYGGEEFMIILPETCAGQAARAAEKLRMVVEVN 190

Query: 207 QINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I++  GP + +TIS G+A+              ++  AD+A++ AK +GRN+V  
Sbjct: 191 DISL-EGPEVKVTISCGVADLASVRPGRGTLRDALVAAADRAMHRAKLNGRNQVAV 245


>gi|262195593|ref|YP_003266802.1| diguanylate cyclase [Haliangium ochraceum DSM 14365]
 gi|262078940|gb|ACY14909.1| diguanylate cyclase [Haliangium ochraceum DSM 14365]
          Length = 294

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 11/184 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVF 133
           +  ++SG  ++  +  +  I +L+ +D L+ + N   F+ SL         Y   LS++ 
Sbjct: 113 IFKFLSGQNIESAY--HEEIYRLTTVDGLTQIYNKRYFMESLEREMGRAQRYRRDLSLIL 170

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           FDID+FK +ND +GH  GD V+  L+ ++         + R GGEEFA          A 
Sbjct: 171 FDIDHFKSVNDTYGHLAGDYVLKQLAVEIKRRIRREDILARYGGEEFAIILPELDVDSAK 230

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252
                +R+I E+++        I +TIS G+          +  I  AD+ LY AK  GR
Sbjct: 231 QFGEKIRRIAEDARFFF-DNTDIPVTISVGVTVLSPTVHSAAEFIKLADEKLYEAKAEGR 289

Query: 253 NRVV 256
           N VV
Sbjct: 290 NCVV 293


>gi|170735853|ref|YP_001777113.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia cenocepacia MC0-3]
 gi|169818041|gb|ACA92623.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia cenocepacia MC0-3]
          Length = 353

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 12/179 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+GL N       L +   +       LS++  D+D FK  N
Sbjct: 160 QQLLEANLELRRLTHSDGLTGLSNRRYLDEYLAAEWRRGARERSELSLLMIDVDNFKLYN 219

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD V+  ++  +    G +  F  R GGEEFA     SS   A +L   +R  
Sbjct: 220 DTYGHVSGDSVLKQIASTIERCLGQSGDFAARFGGEEFAVVMPASSPGAARLLGEKIRLA 279

Query: 203 IENSQINISSGPS--IHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +E  ++  +   +    +TIS G A        P + +I  AD+ALY AK  G+NRV  
Sbjct: 280 VEALRLRHAHSSTGNHTVTISIGGASIVPAPGLPTTVLIEAADRALYRAKHEGKNRVEI 338


>gi|119489536|ref|ZP_01622297.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106]
 gi|119454615|gb|EAW35762.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106]
          Length = 738

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 104/220 (47%), Gaps = 20/220 (9%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLS 110
           +I +    G++Y +V     + I +T+  ++ Y        L  +YNR + ++S  D L+
Sbjct: 527 WISVRYEQGVDYRIVRR--FLFIGLTVLAIVLYRQY-----LLQTYNRKLEKISVTDPLT 579

Query: 111 GLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           G  N       L         Y +  S++  DIDYFK+IND FGH  GD V+  +   L 
Sbjct: 580 GCFNRLKIEECLQKQESLFNRYQQTFSVILCDIDYFKKINDTFGHLAGDAVLMEMVTLLN 639

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   +GR GGEEF   A  +    A  LA  L + + + +  I+ G     T S G
Sbjct: 640 QRLRDTDILGRWGGEEFMIVAPNTDLSGATTLAEALCQQLADHEF-ITVGHQ---TASFG 695

Query: 224 IAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +AE       IS +I + D+ALY AKK GRN VV + + +
Sbjct: 696 VAEFHRGSHSISHLISQVDEALYKAKKKGRNCVVAYQETQ 735


>gi|74318711|ref|YP_316451.1| diguanylate cyclase [Thiobacillus denitrificans ATCC 25259]
 gi|74058206|gb|AAZ98646.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 570

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 86/170 (50%), Gaps = 8/170 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
                R  QL+++D L+GL N  AF        S+   +    S++  DID+FKQIND +
Sbjct: 392 QEQQLRAEQLAQLDPLTGLNNRRAFYGMTAAAWSNALRHAHATSVLLLDIDHFKQINDRY 451

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD V+  ++  L         + R GGEEF      +  ++AA+LA  LR  I   
Sbjct: 452 GHAEGDAVLKTVAGALKQSVRQGDVLARWGGEEFIVFLPETGLRDAALLAERLRVSIAAL 511

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +    G ++ +T S G+AER     + ++I  AD  L+ +K+ GRNRV 
Sbjct: 512 SVTGRVG-TMAVTASIGVAERADHATLDSLIAAADACLFASKQQGRNRVT 560


>gi|15896780|ref|NP_350129.1| GGDEF domain-containing protein [Clostridium acetobutylicum ATCC
           824]
 gi|15026638|gb|AAK81469.1|AE007850_10 Membrane associated GGDEF domain containing protein [Clostridium
           acetobutylicum ATCC 824]
 gi|325510951|gb|ADZ22587.1| Membrane associated GGDEF domain containing protein [Clostridium
           acetobutylicum EA 2018]
          Length = 367

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 72/216 (33%), Positives = 106/216 (49%), Gaps = 10/216 (4%)

Query: 50  LFYIGLTPFYGLEYI--LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107
           L  I +T +Y L  +  +++ L    I I +S +L Y+    +K     Y R  + S  D
Sbjct: 141 LLMINVTDYYMLRKVDGIIDVLVQYSIIILVSGILQYMLLDYVKTSNKLYRRYKRDSTKD 200

Query: 108 CLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+GL N   F          +   NE LS +  DIDYFK+IND +GH +GD ++  LS 
Sbjct: 201 FLTGLSNVRQFDKVFSTARERVKQNNESLSCIMIDIDYFKKINDTYGHAIGDVILRELSK 260

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            L+        V R+GGEEF       S ++   +A  + K +   +  I     I+IT+
Sbjct: 261 VLMKNVRGRDLVARVGGEEFCILLFNCSREKTFQIACRINKEVAEHKFFIGEDEFINITV 320

Query: 221 SAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255
           S G++      P I  +  RAD ALY AK+SGRN+V
Sbjct: 321 SVGLSIYPEITPEIEDLRERADAALYAAKRSGRNKV 356


>gi|320195645|gb|EFW70270.1| hypothetical protein EcoM_02071 [Escherichia coli WV_060327]
          Length = 410

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 238 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 296

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 297 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVFLLPRTPLDTALSLAETIR 356

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 357 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 407


>gi|260774955|ref|ZP_05883855.1| hypothetical protein VIC_000327 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609045|gb|EEX35204.1| hypothetical protein VIC_000327 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 545

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 8/172 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
             ++   +  D L+GL N   F   L  +        + LS++  D+D+FK+ NDNFGH 
Sbjct: 355 QEKLRSQALSDPLTGLFNRRFFEQKLTEHAMNSATSEQPLSLLMLDLDHFKRFNDNFGHD 414

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  +S  L    G      RLGGEE A     S+ ++A   AN L + + +  + 
Sbjct: 415 AGDFVLKEISALLKRSVGDDEIACRLGGEELAVLLPQSNMKQATEFANTLCEAVRSLHLE 474

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                   + +S G++        + +++  ADQALY+AK  GR+RVV + +
Sbjct: 475 HKGLSLGQLGVSIGVSTYPKPSSDMESLVKMADQALYMAKDLGRSRVVNYDE 526


>gi|118578941|ref|YP_900191.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Pelobacter
           propionicus DSM 2379]
 gi|118501651|gb|ABK98133.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pelobacter propionicus DSM
           2379]
          Length = 705

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 87/191 (45%), Gaps = 13/191 (6%)

Query: 84  YISGSIL--KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFF 134
            ISG++L       + + I  L   D L+GL N S     L     + +       ++  
Sbjct: 255 LISGTVLDITARIKAESEIHHLINYDTLTGLPNRSLLHDRLRQAIAQAAQDRHMVWVLCL 314

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAA 193
           D+D FK +ND  GH  GDK++  ++ +L         + RLGG+EF     G  SE+ A+
Sbjct: 315 DLDRFKGVNDTLGHRSGDKLLQEVARRLAACVRESDTLARLGGDEFVVVLDGVVSEKGAS 374

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
           I+A  +  +I    I I     ++ T S GIA      E   T++  AD A+Y AK+  R
Sbjct: 375 IVAKKILTLIAE-PIPIDD-HELYTTASIGIAAYPMDGEDGHTLLKHADLAMYKAKELDR 432

Query: 253 NRVVCFSDIEN 263
           N    FS   N
Sbjct: 433 NNFHFFSHDMN 443


>gi|110641574|ref|YP_669304.1| hypothetical protein ECP_1394 [Escherichia coli 536]
 gi|254792934|ref|YP_003077771.1| putative diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli O157:H7 str. TW14359]
 gi|261224335|ref|ZP_05938616.1| predicted diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257411|ref|ZP_05949944.1| predicted diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli O157:H7 str. FRIK966]
 gi|161788956|sp|Q8X8Q3|YDAM_ECO57 RecName: Full=Uncharacterized protein ydaM
 gi|110343166|gb|ABG69403.1| hypothetical protein YdaM [Escherichia coli 536]
 gi|254592334|gb|ACT71695.1| predicted diguanylate cyclase, GGDEF domain signalling protein
           [Escherichia coli O157:H7 str. TW14359]
          Length = 410

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 238 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 296

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 297 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 356

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 357 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 407


>gi|170725417|ref|YP_001759443.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169810764|gb|ACA85348.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
          Length = 598

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 119/265 (44%), Gaps = 23/265 (8%)

Query: 20  ESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS 79
           E  SP   M +F I   + IA VIF     L      P   + +++   LS   ++I IS
Sbjct: 333 EILSPVYTMSHFLILSGVIIAIVIFFLGYLLAADISLPIVAMTHMMTR-LSRNELNINIS 391

Query: 80  L-----LLGYISGSI------LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125
           +      +G ++ ++        E      +++ ++  D L+GL         +  Y   
Sbjct: 392 VSERKDEVGKMAKAMEVFKNNAIERDQLQKKLNHMAHHDTLTGLPTREYAGQQMKEYLKA 451

Query: 126 ----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                 KL ++F D+D FK IND  GH  GD+++  ++ +L         + R+GG+EF 
Sbjct: 452 GLKKGNKLVVMFADLDNFKSINDTLGHQAGDQLLKEVAVRLSEAVREDDIIARVGGDEFV 511

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKE-PISTIIYR 239
                 +  + +++ +   K+I++  IN         I +S GIA         + +I +
Sbjct: 512 IILPYVN--DLSVIEHIANKMIDSLAINFLLQEQFCQIGLSLGIAVAPDDGLDGTALINK 569

Query: 240 ADQALYVAKKSGRNRVVCFSDIENN 264
           AD+A+Y AK+ G+N  V  S++++ 
Sbjct: 570 ADKAMYQAKQRGKNNFVFASELKDQ 594


>gi|110597553|ref|ZP_01385839.1| GGDEF domain [Chlorobium ferrooxidans DSM 13031]
 gi|110340872|gb|EAT59346.1| GGDEF domain [Chlorobium ferrooxidans DSM 13031]
          Length = 430

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 72/282 (25%), Positives = 114/282 (40%), Gaps = 35/282 (12%)

Query: 18  NLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS--LVIIS 75
           +LE+      ++  + FF  FI  ++   +I   ++ L   Y    I +  L+  L +I+
Sbjct: 146 DLETRGAADKLVDINHFFLFFILAILLTLSITAGWL-LHNNYRQTLIPLAQLASQLKLIN 204

Query: 76  ITISLLLGYISGSILKEL-----------------------FISYNRISQLSRIDCLSGL 112
             I   +   +  + KEL                            ++ +L   D  + L
Sbjct: 205 RNIPESIHDTAEEMKKELTETEPSSDITQITESIMSFCGDIEAKNKKLDELHIRDEKTNL 264

Query: 113 LNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N+  F       +    S   K+S+   DID+FK+ ND  GH  GD V+  L++ +   
Sbjct: 265 YNYRHFKDRLITEVERAKSLESKVSLAMIDIDHFKRYNDAHGHIAGDHVLEILAELISSQ 324

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGI 224
                   R GGEEFA     +    A  +A  LRK+I           P   +T+S GI
Sbjct: 325 CRATDVPSRFGGEEFAVLFPKTDSDTAREIAERLRKLISIEPFPHEQHQPEGQLTVSIGI 384

Query: 225 AERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           A          T+I  AD+ALY AK  GRN VV F+ +  ++
Sbjct: 385 ATFPGDAADWYTLINNADRALYKAKSCGRNNVVTFASMNADS 426


>gi|89900099|ref|YP_522570.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
 gi|89344836|gb|ABD69039.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
          Length = 256

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 84/174 (48%), Gaps = 9/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDN 145
           L    +++ +LS  D L+GL N   F   LG   + ++       ++  DID+FK++ND 
Sbjct: 35  LQRVIDQLCELSLKDPLTGLANRRHFRHVLGREIDAVARSGESALLLMMDIDHFKKVNDT 94

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD+V+  ++  L         V R GGEEF A           I+A  +R  + +
Sbjct: 95  YGHLAGDRVLQAVAKALASCLRPMDTVARYGGEEFTAILPNCPPSFGKIVAERIRATVGS 154

Query: 206 SQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
            Q+ ++   S+ +TIS G A      +   +  I RAD  LY AK  GRNRV  
Sbjct: 155 LQVLVAPLVSLQVTISIGGAFAPEWVRSTTALWIDRADTQLYRAKSEGRNRVYI 208


>gi|28869887|ref|NP_792506.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28853132|gb|AAO56201.1| GAF domain/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 819

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 11/194 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------ 130
           T ++LL        +EL  +  R+   +  D L+GL N S     L    +         
Sbjct: 366 TANVLLEARVRDRTRELDQANARLQHENSHDSLTGLPNRSQLQHRLRQAWQDFCRNGRQL 425

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            ++F D+D FK IND+ GH  GD ++   +++L         + RLGG+EFA  ++ +  
Sbjct: 426 VVMFIDLDRFKMINDSLGHHCGDILLIQAAERLRSCMREEDLLARLGGDEFAVLSIDTPL 485

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
           Q    +A  +    E  Q  +    +I  + S G+  A+    +  + ++  AD A+Y  
Sbjct: 486 QTGTCIAQRILTAFE--QPFVIDDHTIFSSCSIGVVGADSQFHQEPADLLRDADTAMYRV 543

Query: 248 KKSGRNRVVCFSDI 261
           K  GR+    F+  
Sbjct: 544 KNGGRDSFAVFNQA 557


>gi|27381815|ref|NP_773344.1| hypothetical protein bll6704 [Bradyrhizobium japonicum USDA 110]
 gi|27354984|dbj|BAC51969.1| bll6704 [Bradyrhizobium japonicum USDA 110]
          Length = 614

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 12/183 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
              + E     +++S L+  D L+ L N   F   L             LS++  D+D+F
Sbjct: 419 SRDMTERKDLEDKLSALASSDGLTALANRRHFDERLEAEWDRAKREGTPLSLLLMDVDHF 478

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILAND 198
           K+ ND +GH  GD  +  ++  L      P     R GGEEFA     +       +   
Sbjct: 479 KRFNDQYGHQAGDACLRSVAGVLAEQARRPADVAARYGGEEFALLLPNTDMGGCEQVGER 538

Query: 199 LRKIIENSQI-NISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +R+ I++  I +  + PS  +T+S G A       K   +++I  AD+ALY AK+SGRNR
Sbjct: 539 IRQAIQDLGILHALNPPSKQVTLSIGGATHMSFADKADCTSLIVAADKALYAAKESGRNR 598

Query: 255 VVC 257
           +V 
Sbjct: 599 LVM 601


>gi|260219535|emb|CBA26380.1| Uncharacterized signaling protein PA1727 [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 649

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 16/190 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + + +   + ++I QL+  D L+GL N    I  L              +++F D+D+FK
Sbjct: 196 TDITQRKAAEDQIRQLAFYDPLTGLPNRRMLIDRLRHALASSARSAHCGALLFIDLDHFK 255

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE------QEAAI 194
            +ND  GH  GD ++  ++ +L+        V RLGG+E+     G  E       +A  
Sbjct: 256 NLNDTLGHDKGDLLLQQVAQRLLDTVREEDTVARLGGDEYVVMLEGLDEFHDIAASQATA 315

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253
           +   +  I + +     +G   H T S G+      E  +  ++ +AD A+Y AK +GRN
Sbjct: 316 VGEKI--IAKLNWPYQLAGHEFHSTPSMGLTLFNGHEVEVEDLLKQADLAMYQAKGAGRN 373

Query: 254 RVVCFSDIEN 263
            +  +     
Sbjct: 374 GLRFYDPQMQ 383


>gi|288942758|ref|YP_003444998.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Allochromatium vinosum DSM
           180]
 gi|288898130|gb|ADC63966.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Allochromatium vinosum DSM 180]
          Length = 1114

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/193 (28%), Positives = 86/193 (44%), Gaps = 11/193 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           L     S   +L  S   +   +  D L+ L N + F  +LG          +  ++   
Sbjct: 670 LAQSLASQRDQLHQSREEMRHRALHDALTELPNRARFREALGEVIENCRRTGQGFAVALM 729

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK IND  GH  GD ++  ++ ++      P  V RLGG+EFA      ++   A 
Sbjct: 730 DIDHFKTINDTLGHDKGDVLLCAVAKRIRAELPEPGLVARLGGDEFALLLPDITDTAVAS 789

Query: 195 L-ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           L A  + + +  +   +       IT S G+A          ++ +AD ALY AK++GRN
Sbjct: 790 LWAERIVEALRRAI--VVGEDRFSITSSLGLAMGGPDSEPGELLKQADLALYHAKEAGRN 847

Query: 254 RVVCF-SDIENNT 265
           R   F SD+E   
Sbjct: 848 RASHFDSDLERRA 860


>gi|220933899|ref|YP_002512798.1| diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995209|gb|ACL71811.1| diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 370

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 81/180 (45%), Gaps = 14/180 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           E  ++  R+ +L   D L+GL N   F   L             L+ +F DID FK IND
Sbjct: 178 ENALNLRRLRELGLTDPLTGLRNRRYFDEQLPMECQRARREQGPLACLFVDIDRFKSIND 237

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GHP GD+ I  ++ ++         + R GGEEF              +A  +R+ + 
Sbjct: 238 VHGHPAGDQAIREVAQRISAHVRPFDLLARYGGEEFVILLSRLDAAATREVAERVRQAVA 297

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIST-------IIYRADQALYVAKKSGRNRVVC 257
              ++++ GP + +++S G A     +           ++  AD AL  AK+SGRNRVV 
Sbjct: 298 QRPVSLADGPELELSVSLGGAVCARWDSRDEPEQTGRRLMEAADLALLEAKQSGRNRVVM 357


>gi|78357722|ref|YP_389171.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78220127|gb|ABB39476.1| diguanylate cyclase (GGDEF domain) [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 252

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 56/195 (28%), Positives = 89/195 (45%), Gaps = 17/195 (8%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------G 123
           +++ ++ + +L G I G           R + L  ID L+ L N   F   L        
Sbjct: 54  MLVGTVLVFMLFGLIIGR-------HERRFAGLCLIDPLTSLFNKRHFDLRLGQEVARHQ 106

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
             +  + ++  D+D+FK++ND  GH  GD V+  ++  L     T   + R+GGEEFA  
Sbjct: 107 REDSPMCVIMLDLDHFKKVNDTLGHQAGDVVLMAVASTLRGCVRTEDVLARVGGEEFAVV 166

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRA 240
              +     A LA  +R  +E   I +  G    I +S G+A             ++ +A
Sbjct: 167 VPRTDMHGGAALAERIRAAVEEQIIPVGGGRETTIRVSLGVACMEAGSVPVLPHDLMEQA 226

Query: 241 DQALYVAKKSGRNRV 255
           D+ALY AK +GRNRV
Sbjct: 227 DEALYRAKANGRNRV 241


>gi|26988492|ref|NP_743917.1| sensory box protein/GGDEF family protein [Pseudomonas putida
           KT2440]
 gi|24983256|gb|AAN67381.1|AE016364_6 sensory box protein/GGDEF family protein [Pseudomonas putida
           KT2440]
          Length = 973

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 57/214 (26%), Positives = 97/214 (45%), Gaps = 18/214 (8%)

Query: 62  EYILVENL--SLVIISITISLLL--GYISGSILKELFISYNR-----ISQLSRIDCLSGL 112
              L++ L  S V I++  S +L  G +SG +L    ++  R     +S  +  D L+GL
Sbjct: 478 HARLIQRLDGSTVSINLVGSPILNDGQVSGIVLVLHDMTQERQYIANLSWQATHDALTGL 537

Query: 113 LNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N   F       ++ L     + S++F D+D FK +ND  GH  GD+++  +   L   
Sbjct: 538 ANRREFEYRLEQALNDLARQAGRHSLMFLDLDQFKLVNDTCGHAAGDELLRHICAVLQSG 597

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                 + RLGG+EF          +A  +   LR+++++    +  G     T+S G+ 
Sbjct: 598 LREGDTLARLGGDEFGVLLENCPPDQAERIGEQLRQMVQSLHF-VWKGRPFVTTVSIGLV 656

Query: 226 ERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
                   +   +  AD A Y+AK+ GRNRV  +
Sbjct: 657 HMAQAPGTLEASLRAADMACYMAKEKGRNRVQVY 690


>gi|153821080|ref|ZP_01973747.1| ggdef family protein [Vibrio cholerae B33]
 gi|254850122|ref|ZP_05239472.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255746303|ref|ZP_05420250.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262158184|ref|ZP_06029302.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|262169217|ref|ZP_06036910.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|126521454|gb|EAZ78677.1| ggdef family protein [Vibrio cholerae B33]
 gi|254845827|gb|EET24241.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255736057|gb|EET91455.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262022498|gb|EEY41206.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|262030062|gb|EEY48708.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|327485931|gb|AEA80337.1| GGDEF family protein [Vibrio cholerae LMA3894-4]
          Length = 338

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 68/220 (30%), Positives = 111/220 (50%), Gaps = 21/220 (9%)

Query: 58  FYGLEYILVENLSLVIISITISLLLG----------YISGSI------LKELFISYNRIS 101
           F  LE +  +NLS+  +   I  L+           +++  +      +  L     ++ 
Sbjct: 117 FKDLERVEQDNLSIEEVMTVIRRLVSDSKDIRHSTNFLNNQLNAATLEISRLKEQLAKVQ 176

Query: 102 QLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           + +  D LSGL N  AF     +L    +++S++  DID+FK +NDN+GH  GD++I  +
Sbjct: 177 KDALFDSLSGLYNRRAFDGDMFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAI 236

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217
           + +L  +    +   R GGEEFA  A   S + A   A  +R+ IE   + +  SG S+ 
Sbjct: 237 AKRLQSLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVG 296

Query: 218 -ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            IT S G+ E+   + + ++I RAD  LY AK  GRNRV+
Sbjct: 297 SITASFGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 336


>gi|114561776|ref|YP_749289.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
 gi|114333069|gb|ABI70451.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
          Length = 1144

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 11/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFK 140
             + +      +I   +  D L+GL N        S  +         ++++F D+D FK
Sbjct: 689 QDVTQYKQQEEKILHQAHYDSLTGLPNRLLSLDRLSQMLKDAHRAKNNVAVLFLDLDDFK 748

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
           ++ND  GH VGD+++   + +L         VGRLGG+EF       +E  E  I+A+ L
Sbjct: 749 KVNDTMGHSVGDELLIQAAVRLKNTIRESDVVGRLGGDEFIIILSNINEPIEVEIIASKL 808

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +     Q        +  TIS GIA      E    ++ +AD A+Y +K  GRN    +
Sbjct: 809 LEQF--YQPFRLENRELVSTISIGIALYPLDSEDPKELLRQADSAMYHSKDRGRNTYNFY 866

Query: 259 SDIEN 263
           +   N
Sbjct: 867 THQMN 871


>gi|134293315|ref|YP_001117051.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia vietnamiensis G4]
 gi|134136472|gb|ABO57586.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia vietnamiensis G4]
          Length = 371

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 11/176 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+GL N       L +   +       LS++  D+D FK  N
Sbjct: 170 QQLLEANLELRRLTHSDGLTGLSNRRYLDEYLAAEWRRGARERSELSLLMIDVDNFKLYN 229

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD V+  ++  +      +  F  R GGEEFA     ++   A +L   +R  
Sbjct: 230 DTYGHVSGDGVLRQVAATIERCLAQSGDFAARFGGEEFAVVMPATTPGAARLLGEKIRLA 289

Query: 203 IENSQINI-SSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E  ++    S    ++TIS G A        P + +I  AD+ALY AK  G+NRV
Sbjct: 290 VEALRLEHTHSSTGRYVTISIGGASIVPAPGVPATLLIEAADRALYRAKHGGKNRV 345


>gi|319786513|ref|YP_004145988.1| diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1]
 gi|317465025|gb|ADV26757.1| diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1]
          Length = 496

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 19/231 (8%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI-----SGSILKELFISYN 98
            +A +     G    + +  +   +L  +I      L+L  +     +    +E   S  
Sbjct: 261 LLAQMASAAQGFGALFDMRIVQPAHLQAIIEQARELLVLRNLREIQETARARREADASRE 320

Query: 99  RISQL---SRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
            I  L   +R D L+G+ N      +L             LSI F D+D FKQIND  GH
Sbjct: 321 HIRNLTEQARRDPLTGVYNRMQLEEALEREFSAAVAAGHPLSIAFVDLDDFKQINDRHGH 380

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+V+   +  L  +  +   V R GGEEF      S+E  A  +   +      + +
Sbjct: 381 LVGDQVLRQFAQTLQRMLRSTDLVARYGGEEFLVVLAHSNEAAATRVLQRILDETARTPM 440

Query: 209 NISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRV 255
            +  G  +++T SAG+A R  +        +++  ADQALY+AK+ GRN+V
Sbjct: 441 AVVDGHPLYVTFSAGVATRDGEHGQFTCPRSLVQAADQALYLAKRRGRNQV 491


>gi|256111856|ref|ZP_05452821.1| GAF/GGDEF domain-containing protein [Brucella melitensis bv. 3 str.
           Ether]
          Length = 338

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS--- 130
           L++G I+     I  +   +  R++  +  D L+ L N       ++   S  + LS   
Sbjct: 144 LMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGKLLTQKKSARDGLSRDG 203

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSS 188
            ++  D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF      G+S
Sbjct: 204 FLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTS 263

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++  I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK
Sbjct: 264 KEQTDIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAK 322

Query: 249 KSGRNRVVCFSD 260
             G+NR   F +
Sbjct: 323 SKGKNRFEYFEE 334


>gi|149923203|ref|ZP_01911615.1| diguanylate cyclase (GGDEF domain) [Plesiocystis pacifica SIR-1]
 gi|149815919|gb|EDM75436.1| diguanylate cyclase (GGDEF domain) [Plesiocystis pacifica SIR-1]
          Length = 306

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 10/194 (5%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYN 126
           + + + L        + + L    +   +L+ +D L+GL N   +   +           
Sbjct: 116 VELRVRLTAMLRIRRLTQYLESERSSYERLAHVDELTGLPNRRRYDERMHSELALARRSG 175

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             ++++  DID+FK +ND+ GH VGD+V+ F+ + L        +  R GGEEFA  A  
Sbjct: 176 RPVTLLLVDIDHFKDVNDSLGHQVGDEVLGFMGELLDASTRRGDWPFRFGGEEFAIIARN 235

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
           ++ ++A++L   +R   E      ++G     T S GIA     +    +  RAD  LY 
Sbjct: 236 TTAKQASVLGERIRGAFEARSGETAAGLR---TCSVGIASFEPADTPEALFARADARLYA 292

Query: 247 AKKSGRNRVVCFSD 260
           AK++GRNRVV   +
Sbjct: 293 AKQAGRNRVVWEDE 306


>gi|158319665|ref|YP_001512172.1| diguanylate cyclase [Alkaliphilus oremlandii OhILAs]
 gi|158139864|gb|ABW18176.1| diguanylate cyclase [Alkaliphilus oremlandii OhILAs]
          Length = 356

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 109/224 (48%), Gaps = 22/224 (9%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           FIAT I I ++ + +           +    L+  I+S  +  +L YI  +   EL++  
Sbjct: 144 FIATWILIRDVNMVF---------NVVARYALATAIVSTVVYFVLSYIYRT--NELYL-- 190

Query: 98  NRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ + +  D L+GL N   F        +++    E LS++  DID+FK++ND FGH  
Sbjct: 191 -RLKEEATRDFLTGLYNVREFEKVTNELFATIVQRKENLSLLMIDIDFFKKVNDTFGHSS 249

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  LS  +     +   V R GGEEF    LG   + A  +A  +RK +E+    I
Sbjct: 250 GDLVLKQLSTIITSSCRSFDIVSRQGGEEFTVILLGCDHKTALEIAERIRKNVEDHLFII 309

Query: 211 SSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRN 253
                I IT+S G++           +++ AD ALY AK++GRN
Sbjct: 310 DKNEEIKITVSIGVSSYPEVTNDPHHLLHEADDALYFAKRNGRN 353


>gi|95931085|ref|ZP_01313812.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95132894|gb|EAT14566.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 513

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 82/186 (44%), Gaps = 11/186 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           L   +  +L  +      +   S  D L+ + N   F   L             +S++  
Sbjct: 327 LSQTANHMLDRIESLNKELQLASMTDSLTRVGNRRQFDEHLQHEWLIARRNGTVVSLLMI 386

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           DID+FK  ND +GH  GD+ +  +++ +   V      V R GGEEFA          A 
Sbjct: 387 DIDHFKLYNDTYGHQDGDQCLQSVAEVISNQVKREADLVARYGGEEFAVILPDVPLIGAQ 446

Query: 194 ILANDLRKIIENSQI-NISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKS 250
            +A  +R+ I +  I N+ +  +  IT+S G         +    +I  ADQALY AKK+
Sbjct: 447 KVAERIRQAINDLGIPNVDALKTPWITVSIGYESMSPQSGQDCEELIRFADQALYRAKKA 506

Query: 251 GRNRVV 256
           GRN ++
Sbjct: 507 GRNCII 512


>gi|77458522|ref|YP_348027.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1]
 gi|77382525|gb|ABA74038.1| putative GGDEF domain protein [Pseudomonas fluorescens Pf0-1]
          Length = 503

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 96/227 (42%), Gaps = 13/227 (5%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR 99
           A   +     L  + +T    L  ++      +I+ I     +        ++L  S  +
Sbjct: 274 ALAAWRTEALLSAVVVTGLLALTGLIG---WFLILDIRRRTQVEAELMGTQQQLLSSNRQ 330

Query: 100 ISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+GL N   F                 L+++  DIDYFK  ND++GH  GD
Sbjct: 331 LELLAMKDALTGLANRRCFDVTLDLEARRAQRDGTSLALLMIDIDYFKLFNDSYGHVAGD 390

Query: 153 KVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
             +  + + +      P   V R GGEE       +  + A I+A  +   ++ + I+  
Sbjct: 391 DCLQRVGNVVETCVRRPSDLVARYGGEEMGVIMPNTDSEGAQIVAQLILDRLQQANISHE 450

Query: 212 SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVV 256
           S P   +++S GIA        P+  +I  ADQALY AK  GRNR V
Sbjct: 451 SSPLGRVSVSIGIATAAGSRLTPVQGLIEAADQALYSAKALGRNRSV 497


>gi|15600122|ref|NP_253616.1| hypothetical protein PA4929 [Pseudomonas aeruginosa PAO1]
 gi|9951208|gb|AAG08314.1|AE004906_2 hypothetical protein PA4929 [Pseudomonas aeruginosa PAO1]
          Length = 680

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 11/185 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   ++   +  D L+GL N    +            +   ++++  D+D+FK IN
Sbjct: 483 RQLQMREAQLQYAAHHDPLTGLGNRRHLMEFAESALDDARRHGNSMALLLIDLDHFKPIN 542

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKI 202
           D  GH  GD V+  ++ +L     T   V RLGG+EFA    GS+ EQ A  +A  L + 
Sbjct: 543 DTHGHDAGDFVLQNVAQRLRHCVRTEDCVARLGGDEFAVLVGGSNAEQHARDIAERLLR- 601

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            E ++    +   + IT S G+A           +   ADQALY  K +GR      +D 
Sbjct: 602 -ELAKPVEFAKQWLVITPSIGVALFPGDALQFGKLYKAADQALYRVKGAGRAGYAMAADD 660

Query: 262 ENNTC 266
           E  T 
Sbjct: 661 ERETA 665


>gi|312964602|ref|ZP_07778853.1| diguanylate cyclase domain protein [Escherichia coli 2362-75]
 gi|312290623|gb|EFR18501.1| diguanylate cyclase domain protein [Escherichia coli 2362-75]
          Length = 371

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMFGTPAESAITAMLRVHEGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NAPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|283850446|ref|ZP_06367734.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio sp. FW1012B]
 gi|283574017|gb|EFC21989.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio sp. FW1012B]
          Length = 430

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 11/180 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           ++ + +  L     ++   +  D L+G+ N +     L       G + + L+I+ FDID
Sbjct: 254 LTFTDITPLAEERRQLIIRAATDALTGIANRAGIDELLSRELHRTGRHADPLTIIMFDID 313

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK +ND +GHP GD V+  L+  +         +GR GGEEF   A  +  +    LA 
Sbjct: 314 HFKAVNDTYGHPAGDAVLVALARLVADHVRDHDTLGRYGGEEFLIVAPQTDPEAGRQLAE 373

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            LR  +E +    +      +T S G+A          ++ RAD+ALY AK++GRNRV  
Sbjct: 374 RLRAAVEKTVFPAAG----RVTCSFGVATGHPGANARALVARADEALYKAKQTGRNRVAL 429


>gi|212638995|ref|YP_002315515.1| signal transduction diguanylate cyclase [Anoxybacillus flavithermus
           WK1]
 gi|212560475|gb|ACJ33530.1| Signal transduction diguanylate cyclase [Anoxybacillus flavithermus
           WK1]
          Length = 363

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 72/259 (27%), Positives = 115/259 (44%), Gaps = 32/259 (12%)

Query: 30  YFSIFFSIFIATVIFIANIFLF-----YIGLTPFYGLEYILVENLSLVIISIT------- 77
            F+   S FI+  I I   F+      +I  T F+   Y +      + ++I        
Sbjct: 99  MFASIVSFFISVAIAIGCGFISRWMKRHIVTTTFWMNTYSMALISFALFVNIPDHHIYTQ 158

Query: 78  -------ISLLLGYISGSILKELFISYNRISQL---SRIDCLSGLLNHSAF-------IS 120
                  IS++  Y++ +I K++  S   +      +  D L+GL N   F       I+
Sbjct: 159 TLFTFWPISIIATYVTSNICKDIRQSKEMLQHYKAWATTDFLTGLYNVRQFHALLRENIA 218

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   L+++ FDID FK +ND++GH  GD ++  L + +  +     F  R GGEEF
Sbjct: 219 KANEQQSCLALILFDIDRFKCVNDSYGHDGGDVILRHLGELIRSLVPKNGFSFRNGGEEF 278

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYR 239
           +     + E+EA   A  +R  IE     +    ++HITIS GI+           +  +
Sbjct: 279 SILLP-TCEREAMAFAEHIRTTIEQHSFFVQQ-QTVHITISIGISVFPTLATNEPELFKQ 336

Query: 240 ADQALYVAKKSGRNRVVCF 258
           AD ALY AK+ GRNR V +
Sbjct: 337 ADIALYEAKQQGRNRTVVY 355


>gi|171319089|ref|ZP_02908212.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia ambifaria MEX-5]
 gi|171095687|gb|EDT40644.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia ambifaria MEX-5]
          Length = 357

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+GL N       L +   +       LS++  D+D FK  N
Sbjct: 167 QQLLEANLELRRLTHSDGLTGLSNRRYLDEYLAAEWRRGTRERSELSLLMIDVDNFKLYN 226

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD V+  ++  +    G +     R GGEEFA     +S   A +L   +R  
Sbjct: 227 DTYGHVSGDSVLKQVASTIERCLGQSGDLAARFGGEEFAVVMPATSPGAARLLGEKIRLA 286

Query: 203 IENSQINISSGPSIH-ITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IE  ++  +   +   +TIS G A        P +++I  AD+ALY AK  G+NRV  
Sbjct: 287 IEALRLEHAHSSTGRYVTISIGGASIVPAPGVPTTSLIEAADRALYRAKHDGKNRVEI 344


>gi|124515969|gb|EAY57478.1| Diguanylate cyclase with PAS/PAC sensor [Leptospirillum rubarum]
          Length = 1029

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 91/220 (41%), Gaps = 26/220 (11%)

Query: 49   FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
            FL  I ++P    +  LV   SLV I             + +         +  L+  D 
Sbjct: 812  FLAEIRISPILDEDKSLV---SLVAIE------------TDITRERRKEKELRLLAFHDP 856

Query: 109  LSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
            L+GL N +A              Y   L ++FFD+D FK++ND  GH  GD ++A L+ +
Sbjct: 857  LTGLPNRAALEREFEGYLAVARRYRRVLVLLFFDLDGFKEVNDALGHEAGDLLLAELAGR 916

Query: 162  LVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            L         + RLGG+EF      + +  E   +A  L ++I   Q        + I  
Sbjct: 917  LESELRGGDRLFRLGGDEFLVILNNAGTRSEIEQVARRLLEVI--HQPFDLKDQEVGIGA 974

Query: 221  SAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            S GIA           ++  AD A+Y AK  G+NR+  + 
Sbjct: 975  SIGIALYPENAASQQDLLRMADMAMYRAKSRGKNRIEFYE 1014


>gi|120610219|ref|YP_969897.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1]
 gi|120588683|gb|ABM32123.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1]
          Length = 687

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 79/186 (42%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           S   L     +  RI QL+  D L+GL N           + +  +     +I+F D+D 
Sbjct: 240 SFRDLTLQHAAQKRIEQLAYSDVLTGLPNRLLLSRCVASALETARAQGGGFAILFIDLDR 299

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND+ GH  GD+V+  ++ +L         + RLGG+EF           A  +A  
Sbjct: 300 FKIINDSLGHLFGDRVLQLVAQRLRGCLRQNDMLCRLGGDEFVLHLDEGDASMAEAVACR 359

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +  E  Q  +  G    I  S GIA      E +  +I +AD A+Y  K+ GR     
Sbjct: 360 ILE--EMRQPFMLDGMGFSIQCSIGIALHPRDGETLDDLIKQADTAMYRVKERGRGSYGF 417

Query: 258 FSDIEN 263
           +    N
Sbjct: 418 YHPQMN 423


>gi|331682836|ref|ZP_08383455.1| putative GGDEF domain protein [Escherichia coli H299]
 gi|331080467|gb|EGI51646.1| putative GGDEF domain protein [Escherichia coli H299]
          Length = 410

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 238 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 296

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 297 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 356

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 357 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 407


>gi|285018448|ref|YP_003376159.1| gaf domain/ggdef domain/eal domain protein [Xanthomonas albilineans
           GPE PC73]
 gi|283473666|emb|CBA16169.1| putative gaf domain/ggdef domain/eal domain protein [Xanthomonas
           albilineans]
          Length = 962

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 12/187 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQ 141
           + E +++  R++  +  D L+GL N    +  LG   E+         +++F D+D FK 
Sbjct: 532 IAERWLAEQRLTHQAMHDALTGLPNRLQLLDRLGEAIERARGGECKTFAVLFLDLDRFKS 591

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILANDLR 200
           +ND+ GH  GD+++  ++ ++V        V RLGG+EFA           A  LA  L 
Sbjct: 592 VNDSIGHAAGDEMLIQVARRIVSTIRCNDLVARLGGDEFAILMPCDIGVDGACELARRLM 651

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++  SQ    +G  +  + S GIA    +      ++  AD A+Y AK   ++R   F 
Sbjct: 652 HVL--SQPMWIAGRELFPSGSLGIAFWHPRYSHGEELLRDADAAMYRAKAQTKDRCAVFD 709

Query: 260 DIENNTC 266
           +  +   
Sbjct: 710 EAMHEAA 716


>gi|158336002|ref|YP_001517176.1| diguanylate cyclase/phosphodiesterase [Acaryochloris marina
           MBIC11017]
 gi|158306243|gb|ABW27860.1| diguanylate cyclase/phosphodiesterase [Acaryochloris marina
           MBIC11017]
          Length = 901

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 92/239 (38%), Gaps = 20/239 (8%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
             SI +  +I     + F           + L E   L  +S +IS  L         + 
Sbjct: 389 ILSILVVPIIVNHRFWGFIELHNCTREYHWSLQEESILFAMSASISAAL---------QR 439

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNF 146
                 I   +  D L+ L N   F   L          N  ++++F D+D FK IND  
Sbjct: 440 QDKEEIIRHQAFHDALTDLPNRVLFNDRLNIALASAQRNNGSVAVMFMDLDRFKLINDTL 499

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIEN 205
           GH +GD+++  ++ +L         V R GG+EF        S  +A   A  +   ++ 
Sbjct: 500 GHSIGDELLKEVALRLQDCLRDGDTVARWGGDEFTVLLPKIESVNDAINTAYRILDALKA 559

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +   +     + +T S GIA      +    ++  AD ALY +K+ GR     ++   N
Sbjct: 560 A--FVIRRHELFVTTSIGIAIYPEDGQEAEILLQNADVALYRSKEQGRGTCQLYNPTMN 616


>gi|218529967|ref|YP_002420783.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
 gi|218522270|gb|ACK82855.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
          Length = 574

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 12/169 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
             ++   +  D L+GL N      SL  Y         K+S++  D+D+FK++ND  GH 
Sbjct: 384 REKLRNQALRDPLTGLYNRRYMEDSLERYVRLAEREGRKVSVIMIDLDHFKRLNDEHGHA 443

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+   +  +V          R GGEE          ++AA  A  +R  IE+    
Sbjct: 444 TGDAVLCEAAAAIVGALRETDVACRYGGEEMIVFLPDCDLEDAAAKAEQIRGRIES---- 499

Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           +S      ++ S G+A         + +I  AD ALY AK +GRN+V  
Sbjct: 500 LSGTHGAKVSASLGVASVPSTSGTSAELIRAADTALYRAKHNGRNQVAV 548


>gi|119944877|ref|YP_942557.1| diguanylate cyclase [Psychromonas ingrahamii 37]
 gi|119863481|gb|ABM02958.1| diguanylate cyclase [Psychromonas ingrahamii 37]
          Length = 305

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 102/231 (44%), Gaps = 17/231 (7%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY------ISGSILKELFI 95
           V  +  I    IG  P + LEY            + ++  +        IS   +    +
Sbjct: 71  VTAVNGIRAVIIGQQPDFYLEYACHSPDEKRFFMMQVTPFIHQEVQFFVISHKNITNRKL 130

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
           +  ++  LS+ID L+G+ N   F  +L           + L++   D+D+FK +ND +GH
Sbjct: 131 AEEKVLHLSQIDGLTGIANRRYFDETLENEWKRCARSKQPLTLAMIDVDHFKLLNDTYGH 190

Query: 149 PVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
             GD  +  + + L            R GGEEFA     +S  +A  +A+ L  +I    
Sbjct: 191 QAGDNSLVMIGNLLKDLAQRPADLCCRYGGEEFAIIMPQTSNAQAVHIASKLITLIAALN 250

Query: 208 INISSGPSIHI-TISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           I     P+  I T+S G+A      +    ++I +AD++LY AKK GRNRV
Sbjct: 251 IPNKKSPTKAILTVSIGLATVLPSQENDTRSLIAKADKSLYRAKKKGRNRV 301


>gi|153002300|ref|YP_001367981.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|151366918|gb|ABS09918.1| diguanylate cyclase [Shewanella baltica OS185]
          Length = 328

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 76/272 (27%), Positives = 122/272 (44%), Gaps = 29/272 (10%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63
              D  + WL  ++ +ES     FM+    F S      +F       +    P  G   
Sbjct: 60  RFPDLPATWL--KQKMES----VFMLKNRAFISWEQRPYVFQ------FKNYRPITGRAD 107

Query: 64  ILVENLSLVIISIT------ISLLLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNH 115
            + +N++L+ ++        IS+++  ++   +   +L  +  ++ +LS+ D L+ L N 
Sbjct: 108 YMYQNVTLLPLASLTGQVTHISVIIYDVTDIAINKLQLKAANEQLERLSQTDGLTQLHNR 167

Query: 116 SAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
             +   L         Y+   S+V  DID FK IND++GH  GDKVI  ++  L      
Sbjct: 168 RHWQECLDHEYDMYARYSGMASLVMIDIDNFKHINDSYGHLAGDKVIQHIAHLLSQSLRE 227

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER- 227
               GR GGEEFA     +S  +A      LR+ I  S I +     I +T+S G+ E  
Sbjct: 228 TDCAGRYGGEEFAVVLPKTSGADAMNFTERLREKIAASVI-VYESLKISVTVSLGVCEIG 286

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            H    S+ I  +D+ALY AK+ GRN  V  +
Sbjct: 287 SHITSSSSWISCSDKALYEAKQKGRNCSVLHT 318


>gi|89901272|ref|YP_523743.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
 gi|89346009|gb|ABD70212.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
          Length = 422

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 80/176 (45%), Gaps = 11/176 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  + +++  LS  D L+GL N   F                 L+++  D+D+FK  ND
Sbjct: 225 ELQAANSQLETLSTTDGLTGLANRRRFDKYWAEEWQRALRQATPLAVIMMDVDHFKTYND 284

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           ++GH  GD+ +  + + L            R GGEEF     G+S  +A   A  +   I
Sbjct: 285 HYGHQQGDECLRRVGEVLRATVRRAGELAARYGGEEFVVVMPGASLAQAQETAESILAAI 344

Query: 204 ENSQINISSGPSIH-ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              Q+  +S P    +TIS G+A          + ++  AD ALY AK  GRNRVV
Sbjct: 345 RAEQMPHASSPVASVVTISLGVAAGTPGPAGDRARMLNEADVALYDAKHQGRNRVV 400


>gi|15601709|ref|NP_233340.1| GGDEF family protein [Vibrio cholerae O1 biovar eltor str. N16961]
 gi|121586703|ref|ZP_01676487.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121726356|ref|ZP_01679630.1| GGDEF family protein [Vibrio cholerae V52]
 gi|147671516|ref|YP_001215124.1| GGDEF family protein [Vibrio cholerae O395]
 gi|153821045|ref|ZP_01973712.1| GGDEF family protein [Vibrio cholerae B33]
 gi|227812522|ref|YP_002812532.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|229505904|ref|ZP_04395413.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229510242|ref|ZP_04399722.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229517628|ref|ZP_04407073.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229605436|ref|YP_002876140.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|298499730|ref|ZP_07009536.1| GGDEF family protein [Vibrio cholerae MAK 757]
 gi|9658394|gb|AAF96852.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121549131|gb|EAX59166.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121631104|gb|EAX63479.1| GGDEF family protein [Vibrio cholerae V52]
 gi|126521419|gb|EAZ78642.1| GGDEF family protein [Vibrio cholerae B33]
 gi|146313899|gb|ABQ18439.1| GGDEF family protein [Vibrio cholerae O395]
 gi|227011664|gb|ACP07875.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|227015603|gb|ACP11812.1| GGDEF family protein [Vibrio cholerae O395]
 gi|229345664|gb|EEO10637.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229352687|gb|EEO17627.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229356255|gb|EEO21173.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229371922|gb|ACQ62344.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|297541711|gb|EFH77762.1| GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 339

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 68/220 (30%), Positives = 111/220 (50%), Gaps = 21/220 (9%)

Query: 58  FYGLEYILVENLSLVIISITISLLLG----------YISGSI------LKELFISYNRIS 101
           F  LE +  +NLS+  +   I  L+           +++  +      +  L     ++ 
Sbjct: 118 FKDLERVEQDNLSIEEVMTVIRRLVSDSKDIRHSTNFLNNQLNAATLEISRLKEQLAKVQ 177

Query: 102 QLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           + +  D LSGL N  AF     +L    +++S++  DID+FK +NDN+GH  GD++I  +
Sbjct: 178 KDALFDSLSGLYNRRAFDGDMFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAI 237

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217
           + +L  +    +   R GGEEFA  A   S + A   A  +R+ IE   + +  SG S+ 
Sbjct: 238 AKRLQSLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVG 297

Query: 218 -ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            IT S G+ E+   + + ++I RAD  LY AK  GRNRV+
Sbjct: 298 SITASFGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 337


>gi|323491785|ref|ZP_08096960.1| hypothetical protein VIBR0546_11352 [Vibrio brasiliensis LMG 20546]
 gi|323313920|gb|EGA67009.1| hypothetical protein VIBR0546_11352 [Vibrio brasiliensis LMG 20546]
          Length = 655

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 12/179 (6%)

Query: 89  ILKEL--FISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
           IL +L       R+  L+  D L+GL N +     L        S  + L++++ D+D F
Sbjct: 476 ILTDLSNLKEMERLEHLAHHDSLTGLANRAKLYRVLSEVLSGERSGKDGLALLYLDLDGF 535

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND +GH  GD+V+  +SD+L+    +   V RL G+EF      +++Q  +ILA  L
Sbjct: 536 KGVNDTYGHDAGDEVLKQVSDRLLSQVRSNDLVARLSGDEFVIMINSTTKQSVSILAERL 595

Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +I+   I    G  + +  S G+     + + +  ++  AD A+Y AK SG+ R V 
Sbjct: 596 VALIQKEIIY--KGRQLKVGASIGVHFVEDYDKSMDELLKAADTAMYQAKASGKGRFVI 652


>gi|309791095|ref|ZP_07685630.1| signal transduction family protein (GGDEF domain protein)
           [Oscillochloris trichoides DG6]
 gi|308226879|gb|EFO80572.1| signal transduction family protein (GGDEF domain protein)
           [Oscillochloris trichoides DG6]
          Length = 415

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 64/201 (31%), Positives = 101/201 (50%), Gaps = 14/201 (6%)

Query: 71  LVIISITIS-LLLGYISGSIL----KELFISYNRISQLSRIDCLSGLLNHSAFISSL--- 122
           +VI  I +S +++G +  + L    + L  ++  + + S+ D L+ + N   F + L   
Sbjct: 196 VVIWPIIVSHVVIGLVGLAALVYFGRHLQQTFLDLERQSQFDSLTQVYNRRYFDAYLHRE 255

Query: 123 ----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGG 177
                     LSI+  D+DYFK  ND +GH +GD+ +  L   L   +      V R GG
Sbjct: 256 FLRSRREQTPLSIILCDVDYFKTYNDIYGHQMGDQCLRQLGMALAATIKRPGDIVARYGG 315

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTI 236
           EEF      +S + A  +A  +R  +E+  I       S HIT+S G+A    +   S +
Sbjct: 316 EEFVIVLPHTSTEGAYAIAELVRANVESLNILHKGNQVSDHITLSCGVATSHGEIRASML 375

Query: 237 IYRADQALYVAKKSGRNRVVC 257
           + RADQALY AK++G+N VVC
Sbjct: 376 LERADQALYQAKQTGKNMVVC 396


>gi|225593139|gb|ACN96057.1| response regulator [Fischerella sp. MV11]
          Length = 342

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 11/183 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDY 138
            G + K+L  +   + QL+  D L+GL N   F          L      +S++  DID+
Sbjct: 157 QGQVYKQLEAANQALQQLANEDGLTGLANRRRFDQYFNSQWLELAQQRSPISLILCDIDF 216

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           FK  ND +GHP GD  +  +++ L          V R GGEEFA     + ++ A  +A 
Sbjct: 217 FKLYNDKYGHPAGDICLQKVANVLKDTAQKYQDLVARYGGEEFAVILPHTHDRGAVHVAA 276

Query: 198 DLRKIIENSQINISSG-PSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254
            ++  +   +I  S    S  +T+S GIA            +I  AD+ALY AK  GRNR
Sbjct: 277 AMQAGVRELEIVHSGSTVSQFVTLSLGIATIIPNFETSPLALIEAADKALYQAKAEGRNR 336

Query: 255 VVC 257
           ++ 
Sbjct: 337 III 339


>gi|298682175|gb|ADI95243.1| putative diguanilate cyclase [Pseudomonas putida]
          Length = 270

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 111/235 (47%), Gaps = 22/235 (9%)

Query: 40  ATVIFIANIFLFYIGLT---PFYGLEYILVENLSLVIISITISLLLGYISGSILKE---- 92
           A +  + ++ L+++  T   P + L                  +   Y   + LK     
Sbjct: 40  APLALVGSLLLWWLARTIARPLWKLAAGARTMDRAATAEHLHQVRAWYFEAAELKRALLF 99

Query: 93  -LFISYNRISQL---SRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDN 145
            L +   RI +L   ++ D L+GL N  +    +S L + N + + +  DID+FK+IND+
Sbjct: 100 SLNLLQERIGRLNRDAQTDPLTGLGNRRSLEISLSLLEAENREFAAIALDIDHFKRINDS 159

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD+V+  L++ +         + R GGEEF     G++   AA +A  LR  +++
Sbjct: 160 HGHEVGDQVLRQLAELMRRCCREGDLLCRTGGEEFLILLPGATLNVAAAVAERLRVTVQD 219

Query: 206 SQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +     P   +TIS G+       H EP++ +   AD+ALY AK+ GRNRV  
Sbjct: 220 MPVE----PVGAVTISLGVTHWDGETHGEPMNAL-GEADRALYRAKQEGRNRVAF 269


>gi|302344492|ref|YP_003809021.1| response regulator receiver modulated diguanylate cyclase
           [Desulfarculus baarsii DSM 2075]
 gi|301641105|gb|ADK86427.1| response regulator receiver modulated diguanylate cyclase
           [Desulfarculus baarsii DSM 2075]
          Length = 328

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           +L  +   + +++ +D L+GL N   F  +L           E L ++  DID+FK  ND
Sbjct: 149 KLKTANELLRKMAMVDGLTGLANRRYFDEALAREWRRAQSRGEPLGLLMIDIDFFKAYND 208

Query: 145 NFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GH  GD  +  ++  +            R GGEEFA    G+    A  +A  +   +
Sbjct: 209 AHGHQQGDVCLKQVAQAIRDCVSRPGDLAARYGGEEFAVILPGADPDGATDVARRVLTAV 268

Query: 204 ENSQINI-SSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               +    +  + H+T+S G A       +  +T+I  ADQALY AK  GRN+V  
Sbjct: 269 SALGLPHGHASVADHVTVSVGAAALAPGPGQEAATLIQTADQALYQAKSLGRNQVRA 325


>gi|262191934|ref|ZP_06050101.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
 gi|262032168|gb|EEY50739.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
          Length = 338

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 68/220 (30%), Positives = 111/220 (50%), Gaps = 21/220 (9%)

Query: 58  FYGLEYILVENLSLVIISITISLLLG----------YISGSI------LKELFISYNRIS 101
           F  LE +  +NLS+  +   I  L+           +++  +      +  L     ++ 
Sbjct: 117 FKDLERVEQDNLSIEEVMTVIRRLVSDSKDIRHSTNFLNNQLNAATLEISRLKEQLAKVQ 176

Query: 102 QLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           + +  D LSGL N  AF     +L    +++S++  DID+FK +NDN+GH  GD++I  +
Sbjct: 177 KDALFDSLSGLYNRRAFDGDMFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAI 236

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217
           + +L  +    +   R GGEEFA  A   S + A   A  +R+ IE   + +  SG S+ 
Sbjct: 237 AKRLQSLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVG 296

Query: 218 -ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            IT S G+ E+   + + ++I RAD  LY AK  GRNRV+
Sbjct: 297 SITASFGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 336


>gi|222033145|emb|CAP75885.1| Uncharacterized protein ydaM [Escherichia coli LF82]
          Length = 410

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 238 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 296

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 297 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 356

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 357 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 407


>gi|205374179|ref|ZP_03226978.1| diguanylate cyclase [Bacillus coahuilensis m4-4]
          Length = 340

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 62/185 (33%), Positives = 97/185 (52%), Gaps = 9/185 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDID 137
           ++   + E      ++ +L+ ID L+ + N + F+         L +  E+L++V FDID
Sbjct: 149 VTFMDITERVQMQRQLKELATIDGLTKIWNRTYFMELAEALVDKLHTQQEQLAVVMFDID 208

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FKQ+ND +GH  GD V+  ++  +  +  +    GR GGEEF     G +  EA   +N
Sbjct: 209 HFKQVNDTYGHETGDYVLEHVASLVKDMLRSEDLFGRYGGEEFIICMAGVTSLEAEERSN 268

Query: 198 DLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           D+R  I         G  I IT S G+A    +KE +  +I +AD ALY AK++GRNRV 
Sbjct: 269 DIRLAISKFN-QWGIGVPITITSSFGVACGNINKEELKPLIRKADFALYHAKENGRNRVQ 327

Query: 257 CFSDI 261
            + D 
Sbjct: 328 IYQDE 332


>gi|219847712|ref|YP_002462145.1| diguanylate cyclase with GAF sensor [Chloroflexus aggregans DSM
           9485]
 gi|219541971|gb|ACL23709.1| diguanylate cyclase with GAF sensor [Chloroflexus aggregans DSM
           9485]
          Length = 367

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 13/160 (8%)

Query: 106 IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+GLLN   F   L         YN  ++++  DID+FK IND FGH  GD+++  +
Sbjct: 212 TDPLTGLLNRRGFEQRLQEEIDRSLRYNVPMALLMVDIDHFKAINDTFGHVAGDEILRMV 271

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEFA     +  +   IL   +R+ ++ +         + +
Sbjct: 272 AQLLRENVRRHDIVARYGGEEFAVILPATGFEGTPILGERIRRAVQQAAWPY-----VPV 326

Query: 219 TISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           TIS G A         + ++  AD ALY AK+SGRN  + 
Sbjct: 327 TISVGGACCDATMTNATDLLTAADHALYDAKRSGRNCCIV 366


>gi|186471945|ref|YP_001863263.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phymatum STM815]
 gi|184198254|gb|ACC76217.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phymatum STM815]
          Length = 980

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 11/182 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
           G  L +       I Q +  D L+ L N   F + L            +++++  D+D F
Sbjct: 529 GRDLSDRMAFEAAIWQQANFDTLTQLPNRQMFQNRLEQEAKVAQRSGHRMALMLIDLDRF 588

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND+ GH  GD ++   + ++         V RLGG+EF              +    
Sbjct: 589 KEVNDSLGHDTGDTLLIEAARRITSCVRESDTVARLGGDEFTVILPDID--NCGSIERIA 646

Query: 200 RKIIENSQINISSGP-SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           R IIE      + GP    I+ S G+         +  +   ADQA+Y AK +GRNR+  
Sbjct: 647 RTIIETLSEPFALGPDEAFISASIGVTVYPDDARELDVLFKNADQAMYAAKNAGRNRLNY 706

Query: 258 FS 259
           F+
Sbjct: 707 FT 708


>gi|91209450|ref|YP_539436.1| diguanylate cyclase AdrA [Escherichia coli UTI89]
 gi|110640646|ref|YP_668374.1| diguanylate cyclase AdrA [Escherichia coli 536]
 gi|117622648|ref|YP_851561.1| diguanylate cyclase AdrA [Escherichia coli APEC O1]
 gi|218557295|ref|YP_002390208.1| diguanylate cyclase AdrA [Escherichia coli S88]
 gi|237707626|ref|ZP_04538107.1| diguanylate cyclase AdrA [Escherichia sp. 3_2_53FAA]
 gi|306813149|ref|ZP_07447342.1| diguanylate cyclase AdrA [Escherichia coli NC101]
 gi|91071024|gb|ABE05905.1| hypothetical protein UTI89_C0404 [Escherichia coli UTI89]
 gi|110342238|gb|ABG68475.1| hypothetical protein YaiC [Escherichia coli 536]
 gi|115511772|gb|ABI99846.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|218364064|emb|CAR01729.1| putative diguanylate cyclase [Escherichia coli S88]
 gi|222032181|emb|CAP74920.1| Uncharacterized protein yaiC [Escherichia coli LF82]
 gi|226898836|gb|EEH85095.1| diguanylate cyclase AdrA [Escherichia sp. 3_2_53FAA]
 gi|294490300|gb|ADE89056.1| MASE2 domain/diguanylate cyclase [Escherichia coli IHE3034]
 gi|305853912|gb|EFM54351.1| diguanylate cyclase AdrA [Escherichia coli NC101]
 gi|307628147|gb|ADN72451.1| diguanylate cyclase AdrA [Escherichia coli UM146]
 gi|312944962|gb|ADR25789.1| diguanylate cyclase AdrA [Escherichia coli O83:H1 str. NRG 857C]
 gi|315289812|gb|EFU49202.1| diguanylate cyclase domain protein [Escherichia coli MS 110-3]
 gi|323953003|gb|EGB48871.1| diguanylate cyclase domain-containing protein [Escherichia coli
           H252]
 gi|323958578|gb|EGB54281.1| diguanylate cyclase domain-containing protein [Escherichia coli
           H263]
 gi|324010735|gb|EGB79954.1| diguanylate cyclase domain protein [Escherichia coli MS 60-1]
          Length = 371

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|91774395|ref|YP_544151.1| diguanylate cyclase [Methylobacillus flagellatus KT]
 gi|91708382|gb|ABE48310.1| diguanylate cyclase (GGDEF domain) [Methylobacillus flagellatus KT]
          Length = 521

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 69/174 (39%), Positives = 96/174 (55%), Gaps = 8/174 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           + EL +  +RI++++  D L+G LN      +L         +   LSI   DID+FKQI
Sbjct: 338 IYELTLQLDRINEIAHEDYLTGTLNRRGMDEALVRELNRADRFGMPLSIAMMDIDHFKQI 397

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           NDN GH  GD+ +A L+  +     T   + R GGEEF     G++EQ+A  +    ++ 
Sbjct: 398 NDNLGHATGDQALAHLASVIKESLRTTDVIARYGGEEFIILLPGTAEQDAISVIMRAQRE 457

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +   +I + +   I IT SAG+AER   EP   II R DQALY AK SGRNRVV
Sbjct: 458 L-TRKIFLHNDSHILITFSAGVAERKAGEPADAIIGRTDQALYRAKNSGRNRVV 510


>gi|148548490|ref|YP_001268592.1| diguanylate cyclase [Pseudomonas putida F1]
 gi|148512548|gb|ABQ79408.1| diguanylate cyclase [Pseudomonas putida F1]
          Length = 523

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 111/235 (47%), Gaps = 22/235 (9%)

Query: 40  ATVIFIANIFLFYIGLT---PFYGLEYILVENLSLVIISITISLLLGYISGSILKE---- 92
           A +  + ++ L+++  T   P + L                  +   Y   + LK     
Sbjct: 293 APLALVGSLLLWWLARTIARPLWKLAAGARTMDRAATAEHLHQVRAWYFEAAELKRALLF 352

Query: 93  -LFISYNRISQL---SRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDN 145
            L +   RI +L   ++ D L+GL N  +    +S L + N + + +  DID+FK+IND+
Sbjct: 353 SLNLLQERIGRLNRDAQTDPLTGLGNRRSLEISLSLLEAENREFAAIALDIDHFKRINDS 412

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD+V+  L++ +         + R GGEEF     G++   AA +A  LR  +++
Sbjct: 413 HGHEVGDQVLRQLAELMRRCCREGDLLCRTGGEEFLILLPGATLNVAAAVAERLRVTVQD 472

Query: 206 SQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +     P   +TIS G+       H EP++ +   AD+ALY AK+ GRNRV  
Sbjct: 473 MPVE----PVGAVTISLGVTHWDGETHGEPMNAL-GEADRALYRAKQEGRNRVAF 522


>gi|320180216|gb|EFW55151.1| hypothetical protein SGB_02534 [Shigella boydii ATCC 9905]
          Length = 410

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 238 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 296

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 297 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 356

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 357 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 407


>gi|323529618|ref|YP_004231770.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1001]
 gi|323386620|gb|ADX58710.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1001]
          Length = 777

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 108/227 (47%), Gaps = 14/227 (6%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96
            F+ + +F A      +G       + ++   ++ + +   +    G+ +    +  F+ 
Sbjct: 134 FFVGSALFYATAIGLLLGAPRTADADVVVWMWVAAIGMPTAVVFHFGFYAFR--RNHFLL 191

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPV 150
            ++++QL+  D L+GL N  AF++             ++S +F DID FK +ND FGH V
Sbjct: 192 EDQLAQLAATDPLTGLQNRRAFVAQAERRLADVARGGQVSAIFVDIDNFKSLNDRFGHAV 251

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD  +  ++  L+        V R+GGEEFA  + G     A  LA  LR  I   +   
Sbjct: 252 GDLALRQVAQVLLDGTTHGDSVSRIGGEEFAVLS-GEDLAGALRLAERLRGAIAALER-- 308

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              P  ++T S G+AE    E I  ++ RAD+AL  AK SGRNRV  
Sbjct: 309 ---PDGNLTASFGVAEHRGGENIMVLLDRADEALLRAKHSGRNRVCA 352


>gi|116248992|ref|YP_764833.1| GGDEF domain-containing regulatory protein [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115253642|emb|CAK12035.1| putative transmembrane GGDEF domain regulatory protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 428

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 70/268 (26%), Positives = 110/268 (41%), Gaps = 25/268 (9%)

Query: 15  HEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTP-------------FYGL 61
              N+  F   T +I F +     +A       I+L +    P             F   
Sbjct: 151 RHLNIMLFVAVTAIIIFPVPLGWAMAIGATALGIYLVFQLRNPDIKAGSALAGTLFFASG 210

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
               V       I    + LL     S L EL  + +++  L+R D L+G+ N  + + +
Sbjct: 211 VAATVVARRTATIFAQKTFLLELRDRSRLAELTDANSQLELLARTDPLTGVANRRSMMET 270

Query: 122 LG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVG 173
           L              +++  DID FK +NDN GH  GD+ +  ++  +          V 
Sbjct: 271 LHYFWSEDLKRTSGAAMLMCDIDDFKHLNDNLGHAEGDRCLVKVAGIIQSSMRDERDQVA 330

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKE- 231
           R GGEEF     GS EQEA ++A  +R  +E + +   +      +T+S G+A       
Sbjct: 331 RYGGEEFLVFLPGSDEQEAGVIAERIRSRVEAASLPNPTSRVGPWVTVSIGVAILMQNSG 390

Query: 232 --PISTIIYRADQALYVAKKSGRNRVVC 257
                 +  +AD ALY+AKK+GRN VV 
Sbjct: 391 LVSAEHMQRQADAALYLAKKTGRNCVVV 418


>gi|78777681|ref|YP_393996.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78498221|gb|ABB44761.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM
           1251]
          Length = 615

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 8/175 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           E  I   ++   S  D ++GL N                   E  +++  D+D+FK +ND
Sbjct: 430 ESQILMEKLRDTSLRDGMTGLYNRRFLEEIIDKIMSQANRNKETYAVLMLDVDFFKMVND 489

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGDKVI  LS  L           R GGEEF      ++++    +AN +     
Sbjct: 490 TYGHDVGDKVIVALSKILKNSIRESDLAIRYGGEEFLILLSNATDEGIMQVANKIHSNFA 549

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
               ++ +  ++  TIS GI++     + I   I  AD ALY AK +GRN++V F
Sbjct: 550 ALSFDVGTSETLKKTISIGISKFPTDGDTIWKCIKYADTALYEAKNTGRNKIVEF 604


>gi|77456418|ref|YP_345923.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1]
 gi|77380421|gb|ABA71934.1| conserved GGDEF domain protein [Pseudomonas fluorescens Pf0-1]
          Length = 329

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 9/178 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
              + +       + +L+  D L+   N   F                +++ +  DID F
Sbjct: 151 AEDITDKKQMETELQRLATTDVLTQSSNRRHFFECAHREFEQARLQGAQMAFLLLDIDDF 210

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND +GHP GD V+  +++            GR+GGEEFAA   G +   A  +A  L
Sbjct: 211 KVINDTYGHPEGDNVLQRIAECGRASLRRGDLFGRIGGEEFAAVFPGCAPDMAMQVAERL 270

Query: 200 RKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++ I+    N +   +  IT+S G+       E + T+  RAD A+Y AK+ G+NR++
Sbjct: 271 QREIQRLSFNHAD-QTFGITVSQGLTSLTPEDESLDTLFARADAAMYEAKRQGKNRII 327


>gi|310778304|ref|YP_003966637.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
 gi|309747627|gb|ADO82289.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
          Length = 465

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 67/215 (31%), Positives = 108/215 (50%), Gaps = 25/215 (11%)

Query: 71  LVIISITISLLLGYISGSIL--KELFISYNRI----SQLSRIDCLSGLLNHSAFISSL-- 122
           +++I IT S+L+   S  +L  +E     ++I      L+ +D L+ L N       L  
Sbjct: 247 MLLICITFSILVMINSRLVLGLEEESQKRDKILEDYKYLATVDGLTKLWNRKTIEGRLRE 306

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y  K+S++  D+D+FK++NDNFGHP GD V+  +S+ L        F+GR GG
Sbjct: 307 EFDRSQRYRSKMSVILLDVDHFKKVNDNFGHPTGDLVLEKISEILKNTLRKTDFIGRWGG 366

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EEF    + + ++    +A  LR+ IE+    + S     +TIS G A     E +  I+
Sbjct: 367 EEFIVVCVETDQRAVWKVAEKLRQEIEHYNFGLES----QVTISLGTATLDRGESLEDIL 422

Query: 238 YRADQALYVAKKSGRNRVV--------CFSDIENN 264
            RAD  +Y AKK+GRN+ +         +  +EN+
Sbjct: 423 KRADDNMYRAKKAGRNKTIPSLNSKEKFYEKLEND 457


>gi|269961335|ref|ZP_06175700.1| GGDEF family protein [Vibrio harveyi 1DA3]
 gi|269833886|gb|EEZ87980.1| GGDEF family protein [Vibrio harveyi 1DA3]
          Length = 337

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 59/172 (34%), Positives = 91/172 (52%), Gaps = 5/172 (2%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNF 146
           +  L      + + +  D LS L N  AF + L      N+ +++V  DID+FK  NDN+
Sbjct: 164 ISRLKNQLAEVQKDALFDGLSNLYNRRAFDNDLQMLIDSNQAMTLVMLDIDHFKAFNDNY 223

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD VI  ++ +L       +   R GGEEFA      S + A   A+ LR++IE  
Sbjct: 224 GHLFGDTVIKAIARRLQQSCRDGISAYRFGGEEFAVIIPNKSLRIARQYADTLRRMIEKL 283

Query: 207 QI-NISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++ +  SG  +  IT S G+AE    +   +++ +AD+ LY AK+ GRNRV+
Sbjct: 284 RVRDKRSGTQVQSITASFGVAEFEVGDTPESLVNKADKQLYEAKQLGRNRVM 335


>gi|257487887|ref|ZP_05641928.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 786

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 11/194 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI----- 131
           T ++LL        +EL  +  R+   +  D L+GL N S     L    +   +     
Sbjct: 507 TANVLLEARVRDRTRELDQANARLQHENSHDSLTGLPNRSHLQHRLKQAWQDFCLNGQQL 566

Query: 132 --VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
             +F D+D FK IND+ GH  GD ++   +++L         + RLGG+EFA  ++ +  
Sbjct: 567 IVMFIDLDRFKMINDSLGHHCGDILLVQAAERLRSCMREGDLLARLGGDEFAVLSIDAPL 626

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
           Q    +A  +    E  Q  +    S+  + S G+  A+    +  + ++  AD A+Y  
Sbjct: 627 QAGTDIAQRILTAFE--QPFVIDDHSVFSSCSIGVVGADSRFHQEPADLLRDADTAMYRV 684

Query: 248 KKSGRNRVVCFSDI 261
           K  GR+    F+  
Sbjct: 685 KNGGRDSFAVFNQA 698


>gi|322419792|ref|YP_004199015.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Geobacter sp.
           M18]
 gi|320126179|gb|ADW13739.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. M18]
          Length = 1097

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 96/212 (45%), Gaps = 19/212 (8%)

Query: 70  SLVIISITISLLL---GYISGSI-----LKELFISYNRISQLSRIDCLSGLLNHSAF--- 118
           SL   ++++S +L   G ++  +     + E      ++   S  D L+GL N +     
Sbjct: 488 SLFWNALSVSPVLNAAGEVTNYVGIVNDITERKRYEEQLEYQSNHDGLTGLPNRNLLGDR 547

Query: 119 ----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
               ++    Y  + ++ F D+D+FK IND+ GH +GDK++   + +L     +   V R
Sbjct: 548 IGQALTYAERYQRQTAVFFIDLDHFKFINDSLGHDMGDKLLQIAARRLSECVRSIDTVAR 607

Query: 175 LGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
            GG+EF       +  ++AA +A  ++  +   +        + ++ S GI+        
Sbjct: 608 HGGDEFVIVLSDLAVSEDAAKVARKIQDAV--CRPYQIGEHELVVSCSTGISLYPKDGSD 665

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
              ++  AD A+Y AK+ GRN    ++   N+
Sbjct: 666 AQVLLKNADVAMYRAKQCGRNNFQFYTGDLND 697


>gi|229061718|ref|ZP_04199052.1| Sensory box/GGDEF family protein [Bacillus cereus AH603]
 gi|228717567|gb|EEL69229.1| Sensory box/GGDEF family protein [Bacillus cereus AH603]
          Length = 430

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          +EK++++ FDID FK +
Sbjct: 254 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILELEWDNAVRNDEKIALILFDIDNFKSV 313

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L+D +           R GGEEF      + E+EA  +A  LR  
Sbjct: 314 NDTYGHDFGDLALVQLADLMKSKVEDQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 373

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE    +  S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 374 IETKHFSGIS----KLTASFGVALYEQGITREELMQRADIALYEAKKNGKNQVCIY 425


>gi|229098515|ref|ZP_04229456.1| Sensory box/GGDEF family protein [Bacillus cereus Rock3-29]
 gi|229117541|ref|ZP_04246913.1| Sensory box/GGDEF family protein [Bacillus cereus Rock1-3]
 gi|228665861|gb|EEL21331.1| Sensory box/GGDEF family protein [Bacillus cereus Rock1-3]
 gi|228684837|gb|EEL38774.1| Sensory box/GGDEF family protein [Bacillus cereus Rock3-29]
          Length = 430

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 85/176 (48%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          +EK++I+ FDID FK +
Sbjct: 254 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEVEWDNVIRNDEKMAIILFDIDNFKTV 313

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 314 NDTYGHDFGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 373

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q +  S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 374 IETKQFSGIS----KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCIY 425


>gi|193215888|ref|YP_001997087.1| diguanylate cyclase [Chloroherpeton thalassium ATCC 35110]
 gi|193089365|gb|ACF14640.1| diguanylate cyclase [Chloroherpeton thalassium ATCC 35110]
          Length = 440

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 89/178 (50%), Gaps = 9/178 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           KE+    N ++Q+   D  + L N   F       ++    +NE LS++  D+D FK  N
Sbjct: 259 KEVEEKTNELNQMVITDEKTKLFNFRHFKQEFLIEVARAKRFNEPLSLIMIDVDKFKHYN 318

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH +GD+V+  +S  L           R GGEEFAA    +  +EA  +A  +R  I
Sbjct: 319 DTNGHMLGDQVLIKVSALLKKECRETDVPARFGGEEFAALLPRTDAKEAFQVAERIRSSI 378

Query: 204 ENSQI-NISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           E S+  N  + P  ++T S G+A           +I  AD+ALY AK++GRNRV  +S
Sbjct: 379 ETSEFENQKAQPGGNLTASLGVATFPFDAYDAEALIIAADEALYRAKENGRNRVEVYS 436


>gi|89902389|ref|YP_524860.1| PAS/PAC sensor-containing diguanylate cyclase [Rhodoferax
           ferrireducens T118]
 gi|89347126|gb|ABD71329.1| diguanylate cyclase with PAS/PAC sensor [Rhodoferax ferrireducens
           T118]
          Length = 840

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 57/219 (26%), Positives = 94/219 (42%), Gaps = 16/219 (7%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGY------ISGSILKELFISYNRISQLSRID 107
           G +P + LEY    +      S++++ L G       +S   + E      ++  L+  D
Sbjct: 455 GRSPRFYLEYTCHSSQQQRWFSMSVTPLQGEALQGAVVSLEDISERIQMEKQVRDLAFYD 514

Query: 108 CLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+ L N    +  L            +L+++F D+D FK IND  GH VGD V+  ++ 
Sbjct: 515 PLTHLPNRRLALERLTQQLVRARRAQTRLALLFIDLDKFKPINDALGHEVGDWVLHAVAQ 574

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           ++           RLGG+EF        +   A  +A  +R  +       + G  + I+
Sbjct: 575 RIQACLRESDTAARLGGDEFVVLLPDLQTSDAALAVAEKIRAALAQ-DFVTTQGLVLSIS 633

Query: 220 ISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
            S G+A    H E    ++   D+A+Y AKKSG N V  
Sbjct: 634 SSIGVALYPDHGETEKDLLRLGDEAMYRAKKSGCNAVQL 672


>gi|52840981|ref|YP_094780.1| GGDEF domain-containing protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|54296770|ref|YP_123139.1| hypothetical protein lpp0809 [Legionella pneumophila str. Paris]
 gi|52628092|gb|AAU26833.1| GGDEF domain protein [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|53750555|emb|CAH11957.1| hypothetical protein lpp0809 [Legionella pneumophila str. Paris]
          Length = 516

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 15/185 (8%)

Query: 87  GSILKELFISYNRISQLS-------RIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
            + L+E   +   I  L          D L+GL N  ++   +          +  LS+ 
Sbjct: 332 QARLQESEQNAEEIKNLLAFQKYRINHDSLTGLPNRESYDEHILDSFQRWKRSSSALSLA 391

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK+INDNFGH  GDKV+  ++        T  F+ R+GGEEF      +S +EA
Sbjct: 392 VCDIDHFKRINDNFGHLAGDKVLKKVAMIFKSSIRTVDFIARIGGEEFVFIFEQTSSKEA 451

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             +   LRK++E+          + +T+S G+     ++ I ++  RAD A+Y AK +G+
Sbjct: 452 FGILEKLRKLVEDCLFYYRD-KKVDVTVSFGLTTVTEEDDIESLFMRADNAMYKAKNAGK 510

Query: 253 NRVVC 257
           NRV  
Sbjct: 511 NRVEI 515


>gi|332526042|ref|ZP_08402180.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2]
 gi|332109885|gb|EGJ10513.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2]
          Length = 533

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 7/165 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+++ +R D L+G+ N       L         +   L++   DID FK+IND  GH  G
Sbjct: 362 RLAEQTRTDPLTGVANRRQLDERLRDEYARAARHGHALAVAMIDIDDFKRINDRHGHAAG 421

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++  L         V R GGEEF    + +S  +A      +R  +E    +  
Sbjct: 422 DAVLREVATLLRAHCRDIDLVARYGGEEFCVVFVEASANDALRACEAMRAAVEAHDWSAV 481

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +     +T+S G+AER   +    ++  AD  LY AK+SG+NRVV
Sbjct: 482 APELQRVTLSTGLAEREEADGRQALVAAADARLYEAKRSGKNRVV 526


>gi|304407276|ref|ZP_07388929.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9]
 gi|304343717|gb|EFM09558.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9]
          Length = 440

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 72/245 (29%), Positives = 124/245 (50%), Gaps = 20/245 (8%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI- 89
           F+I  SIFIA +  ++N  L  I L      + +   +L +  +  + +  L  ++ +  
Sbjct: 190 FAILLSIFIAVI--LSNYLLRRIRLLK-TSAQTVAKGDLQVPDLRFSGADELTELANAFN 246

Query: 90  -----LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDID 137
                L+ +  S + + QLS  D L+G+ N   +  +L           + LS++ FDID
Sbjct: 247 AMTYSLRTMLDSNHVLKQLSSRDGLTGIANRRCYDETLEREWNRLAIASKPLSLILFDID 306

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILA 196
           YFK  ND +GH  GDK +  +++ L      P  +  R GGEEFA      S ++A  +A
Sbjct: 307 YFKPFNDWYGHQAGDKCLQQVANLLQEHASEPHQLASRYGGEEFAILLSDQSIEQAMQIA 366

Query: 197 NDLRKIIENSQINISSGP-SIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRN 253
             +++ +    I  S    S ++T+S GI+     +  P S ++++ADQALY+AK++GRN
Sbjct: 367 ESIQQALVKLSIPHSQSEVSDYVTVSVGISTVTATDKVPSSNLMHQADQALYLAKRNGRN 426

Query: 254 RVVCF 258
           +V  +
Sbjct: 427 QVAVY 431


>gi|295699042|ref|YP_003606935.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
 gi|295438255|gb|ADG17424.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
          Length = 371

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 15/175 (8%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFG 147
               R+ QL   D L+GL N   F   L         Y   ++ +F DID FK IND+ G
Sbjct: 187 AHRERLKQLGMTDSLTGLANRRYFDERLREELMRAVRYRAPVACLFIDIDGFKSINDSHG 246

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD+ +A ++  +         V R GGEEFAA   G    +A  +A  +R  +EN  
Sbjct: 247 HQIGDRALAAVAACVRQQVRLGDTVARYGGEEFAALLQG-DRSDALTVAERVRLAVENLD 305

Query: 208 INISSGPSIHITISAGIAERCHKEPIST-------IIYRADQALYVAKKSGRNRV 255
           +    G  I +++S G+A R      +        ++  AD+A+Y AK++GRNR+
Sbjct: 306 VRDEHGERIALSVSIGVAARVVAGSPADAMSLGQAMMDEADRAMYQAKRNGRNRI 360


>gi|218688248|ref|YP_002396460.1| diguanylate cyclase AdrA [Escherichia coli ED1a]
 gi|218425812|emb|CAR06618.1| putative diguanylate cyclase [Escherichia coli ED1a]
          Length = 371

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|167589310|ref|ZP_02381698.1| diguanylate cyclase [Burkholderia ubonensis Bu]
          Length = 506

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 101/207 (48%), Gaps = 14/207 (6%)

Query: 72  VIISITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129
           V  SI  +L   + ++    L++       ++ L+R D L+GL N  A   +L    E+L
Sbjct: 298 VPASIICALFCAVVWLLAFALRDNLRKQTLLTDLTRTDPLTGLSNRRALDVALADEWERL 357

Query: 130 --------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEF 180
                   S++F D D+FKQ ND +GH  GD  + FL++ +            R GGEEF
Sbjct: 358 QRGNDASLSVLFIDADHFKQYNDRYGHAQGDAALRFLAECIRAHTRRRGDIAARYGGEEF 417

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIY 238
            A    + E  AA +A  +R+ +EN+++   +      T+S G A     H   I  +  
Sbjct: 418 VAVLPDTDESGAAKVAEAIRREVENNRLAGLAEAVPAFTVSIGCATARSAHPPSIDALSR 477

Query: 239 RADQALYVAKKSGRNRVVCFSDIENNT 265
           +AD ALY AK+ GRNRV C +  E +T
Sbjct: 478 QADLALYTAKRQGRNRV-CHAPAEQHT 503


>gi|117618921|ref|YP_855815.1| response regulator PleD (Stalked cell
           differentiation-controllingprotein) [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117560328|gb|ABK37276.1| response regulator PleD (Stalked cell
           differentiation-controllingprotein) [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 379

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 105/243 (43%), Gaps = 14/243 (5%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLL 82
           P+  +  F+IF       +     I +  +       G     V+ L+ + +    +L  
Sbjct: 123 PYLLISLFAIFPIPLSLGLQLAGGILVTMLAGNWLLVGQPLWSVQTLNQIWLLGLFALAS 182

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFD 135
            ++    L  L   Y      S  D L+G++N    +  L              +++  D
Sbjct: 183 SWVQCGQLNMLLQLYRE----STTDELTGMMNRRLLMKQLEKARMSMIRKQAPFAVLLLD 238

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAI 194
           +D FK+IND FGH  GD V+  ++  L       M +GR GGEEFA      +E  +A  
Sbjct: 239 LDRFKRINDTFGHLAGDAVLKEVAATLAEQLEPGMVLGRYGGEEFAILLPNCAELAQAKR 298

Query: 195 LANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +A  LR  +E   +   +    + +T+S G+      E +  ++ RAD+ LY+AK +GRN
Sbjct: 299 VAERLRVAVEARLVKSPTSDELLEVTVSIGLTLALRGEGVEDLLNRADECLYMAKMAGRN 358

Query: 254 RVV 256
            VV
Sbjct: 359 CVV 361


>gi|95928854|ref|ZP_01311600.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
 gi|95135199|gb|EAT16852.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
          Length = 508

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 93/194 (47%), Gaps = 14/194 (7%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           S +LG+     + +  I    + +++  D L+GL N S F   L             + +
Sbjct: 317 SAVLGWF--YDITDRKIMEEEVEKMAYYDVLTGLPNRSLFFDRLKQALIKADREKRLVGL 374

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALG-SSE 189
           +F D+D FK +ND +GH VGD ++  +S+++          V R+GG+EF       ++ 
Sbjct: 375 LFLDLDKFKPVNDQYGHHVGDVLLKAVSERICGCLRRKTDSVARIGGDEFVILLPTLATI 434

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAK 248
           ++   +   +R+  E +Q  +  G ++ ++ S G++    H +    +I  AD A+Y AK
Sbjct: 435 EDGVKIGEKIRE--ELNQPFVVDGKTLDVSSSIGMSVYPTHADDEHDLIKTADIAMYYAK 492

Query: 249 KSGRNRVVCFSDIE 262
             GRNR+  + +  
Sbjct: 493 ADGRNRINVYYEAM 506


>gi|330943949|gb|EGH46156.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 530

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 87/200 (43%), Gaps = 20/200 (10%)

Query: 81  LLGYISGSILKE---------LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124
           L+G+I   I  E         L      +  ++  D L+GL N   F             
Sbjct: 301 LIGHIHSRIRAEDQLLDSQAALIQLNQHLELIASEDKLTGLANRRRFDQFLEVEFKRARR 360

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAA 183
               LS++  D D+FK+ ND++GH  GD+ +  L+  +   +        R GGEE A  
Sbjct: 361 ERSLLSLILIDADHFKRYNDHYGHLAGDECLIALARVVEQFIRRPSDVAARYGGEEIAVV 420

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRA 240
             G+ E  A  +A  + + I + QI   + P   +TIS G+A     +       +I  A
Sbjct: 421 LPGTDESNARQVAEKILQAIRDEQIEHPASPFGIVTISLGVATFVGTDRQLDQRGLIELA 480

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D+ALY AK  GRNRV   S+
Sbjct: 481 DRALYAAKSQGRNRVNVASE 500


>gi|302522076|ref|ZP_07274418.1| LOW QUALITY PROTEIN: integral membrane phosphodiesterase
           [Streptomyces sp. SPB78]
 gi|302430971|gb|EFL02787.1| LOW QUALITY PROTEIN: integral membrane phosphodiesterase
           [Streptomyces sp. SPB78]
          Length = 1225

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 89/199 (44%), Gaps = 17/199 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           ++   + E      ++   +  D L+ L N + F   +          +  ++++F D+D
Sbjct: 506 LNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTRRVRRALKGRRTGDTGVAVLFIDLD 565

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND+ GH  GD+++   + +L     +     RLGG+EFAA  +G   ++ A    
Sbjct: 566 GFKGVNDSIGHQAGDELLVQAARRLHESVRSGDTAARLGGDEFAALIVGDGSRDVAAREQ 625

Query: 198 DLRKIIENSQINIS-----SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            ++ + E  ++ +S      G  + I  S G+A   +      ++  AD A+Y AK  G+
Sbjct: 626 QIKDLAERLRVALSLPYTIEGQEVRIAASIGVAFAENGLGAGELLRNADLAMYRAKGLGK 685

Query: 253 NRVVCF-----SDIENNTC 266
           +RV  +     ++    T 
Sbjct: 686 DRVELYVPQLQTEAARRTA 704


>gi|257487818|ref|ZP_05641859.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|331008533|gb|EGH88589.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 703

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 103/241 (42%), Gaps = 15/241 (6%)

Query: 39  IATVIFIANIFLFYI--GLTPFYGLEYILVENLSLVIISITISLLLGYI---SGSILKEL 93
           +A   F    F   +  GL+       +LV +LS++ I++   +L  ++   +  +   L
Sbjct: 193 MAAATFADGSFCGALPDGLSSNGLDRIVLVASLSILGIALFSCILDSHLETRTAVLANSL 252

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNF 146
             +   ++ L+  D L+GL N       +    +K        +++F D+D FK +ND F
Sbjct: 253 TEANQELTHLALHDNLTGLPNRVLLTDRIEQAMKKVSESGGCFALMFMDLDGFKPVNDAF 312

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD ++  ++ +L         + R+GG+EF         Q+A  +A   R++ E  
Sbjct: 313 GHHTGDLLLRQVALRLRNNLHRHDTLARIGGDEFVLLVELHDPQDALAVAT--RQVNEIG 370

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                    + I++S GI     +      ++  AD A+Y  K +G+N    F    N+ 
Sbjct: 371 NPFTIGEHQLQISLSIGICMYPGNGNTQHELLINADAAMYHTKAAGKNGYSFFDASMNSN 430

Query: 266 C 266
            
Sbjct: 431 A 431


>gi|170702307|ref|ZP_02893204.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           IOP40-10]
 gi|170132790|gb|EDT01221.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           IOP40-10]
          Length = 516

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQIND 144
              +   I  L+R D L+GL N     + L              L++++ D+D FK IND
Sbjct: 331 RRRAEQHIRHLARHDALTGLPNRHELHAELRRRLAHRPRAPSPALAVMYLDLDGFKAIND 390

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD+V+  ++++L           R+GG+EF  A   ++ Q  +ILA  + + I 
Sbjct: 391 RFGHQAGDEVLTQVAERLGKTLPPGELAARIGGDEFIVAIDDTTMQACSILAARIIRQI- 449

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++   +S G ++ + IS GIA          +I +AD ALY AK  G+     +S
Sbjct: 450 SAPYTLSIGATVSLGISIGIALDDGHGSPDELIRQADSALYDAKSGGKGIYRFYS 504


>gi|84623432|ref|YP_450804.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84367372|dbj|BAE68530.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 569

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 8/170 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNF 146
                 + + S  D L+GL N      SL             LS++  D+D+FKQ ND+ 
Sbjct: 389 LRLRESLRRQSIRDALTGLYNRRYLEESLSHELARCARRGLPLSVLMLDVDHFKQFNDSQ 448

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD ++A + + L+    T     R GGEEF      +  +EA  +A  +R  I   
Sbjct: 449 GHAGGDLLLAAVGELLLTRLRTEDVACRYGGEEFTVLLPEADGEEALRVAEQIRGYIAAL 508

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
            ++  +     +T S G+A      E  +++I +AD ALY AK  GRNRV
Sbjct: 509 AVSDEARALPKVTASIGVASFPADGEQGASLIQKADAALYRAKHRGRNRV 558


>gi|17549743|ref|NP_523083.1| hypothetical protein RS04801 [Ralstonia solanacearum GMI1000]
 gi|17431998|emb|CAD18675.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum GMI1000]
          Length = 505

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 98/234 (41%), Gaps = 21/234 (8%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           + + ++  + + +I+  +     + G          +V++   + + +  +    L+   
Sbjct: 270 YPLILSVGLALDDIYAEWRQRAWWIG---------GIVLLLDAVLIGMSILFARQLRRRM 320

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFG 147
            +  +++ L+  D L+GL    A  ++L             L+++  D+D FK  ND +G
Sbjct: 321 EAEQKLAWLANTDGLTGLGTRRALDAALEAEWQRANRQGRPLAVLMIDVDEFKHYNDRYG 380

Query: 148 HPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  GD V+  ++  +   +     F GR GGEEF      +    A  +A  +R  +  +
Sbjct: 381 HAAGDTVLRTVARCVNDSIRRPGDFAGRYGGEEFCVLLPDTDLAGAQRVAEIIRATVLAA 440

Query: 207 QINISSGPSIHITISAGIAERCH----KEPISTIIYRADQALYVAKKSGRNRVV 256
               +      +T+S G+A            + +++ AD  LY AK  GRN V+
Sbjct: 441 GEPNAGSAHGRLTVSIGVAAHDGRGDTGTTPARLLHHADLQLYEAKSGGRNAVM 494


>gi|332305295|ref|YP_004433146.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172624|gb|AEE21878.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 684

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 11/186 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFK 140
             + E   +   I Q +  D L+ L N        S  +       EK++++F D+D FK
Sbjct: 242 RDITEQHKAAESIRQHAYFDSLTSLPNRFLSLDRLSQMLKEAQRSKEKVALLFLDLDDFK 301

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           ++ND+ GH VGDK++  ++++L +       VGRLGG+EF       + + +A  +A +L
Sbjct: 302 KVNDSLGHEVGDKLLKEVANKLTLALRKADTVGRLGGDEFIVLLRSLTGDSDAIDIAENL 361

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +I    +     G  + +T+S GI     + +  S ++  AD A+Y +K SGRN    F
Sbjct: 362 LEIFR--EPFEIDGKELVLTLSIGIVTYTKNGDSASDLLRHADAAMYQSKLSGRNTYSFF 419

Query: 259 SDIENN 264
           +   ++
Sbjct: 420 TKEMSD 425


>gi|304310950|ref|YP_003810548.1| probable diguanylate cyclase (GGDEF domain) [gamma proteobacterium
           HdN1]
 gi|301796683|emb|CBL44895.1| probable diguanylate cyclase (GGDEF domain) [gamma proteobacterium
           HdN1]
          Length = 420

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 11/186 (5%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIV 132
           L LG+   ++L+++     ++  L+  D L+GL N           +       EK+ ++
Sbjct: 234 LYLGF--NAMLEKIRERDEQLRLLATTDALTGLANRRHAMETMEVMVERSRRTGEKIGVI 291

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK+IND FGH VGD V+  L   L           R GGEEF      +  +  
Sbjct: 292 LLDVDHFKKINDTFGHHVGDAVLIGLGKTLQSCARRYDLAVRWGGEEFLLLCDNADLETT 351

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKS 250
           A +A  +R+ +            + +T+S G+       +  +  ++ +AD+ALY AK+S
Sbjct: 352 AGIAERVRQSVAVQSFETGDRMCLGVTVSLGVCSEVPIAQAAVDKMLEKADRALYRAKES 411

Query: 251 GRNRVV 256
           GRN+V 
Sbjct: 412 GRNQVA 417


>gi|254491340|ref|ZP_05104520.1| GGDEF domain protein [Methylophaga thiooxidans DMS010]
 gi|224463469|gb|EEF79738.1| GGDEF domain protein [Methylophaga thiooxydans DMS010]
          Length = 494

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 11/180 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + +      +I  L+  D L+ L N   F   L           E L ++F D+D FK 
Sbjct: 316 DITDRIRMEEQIKLLAYHDSLTNLPNRHLFEDRLKLALKHAERDKELLGVMFIDLDGFKS 375

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLR 200
           IND+ GH VGD+++  ++D++  +      + R+GG+EF       +   +A  +A  L 
Sbjct: 376 INDSHGHGVGDQLLKAVADRVTSILRQSDTLSRIGGDEFIVLLPKINAVDDAMKVAEKL- 434

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++  S+    +   + ++ S G+A    H +   T++  AD A+Y  K SG+N V  ++
Sbjct: 435 -LLALSKPFGINSHQLQMSASIGLAIYPQHGDTAQTLLKNADIAMYQVKDSGKNNVRLYN 493


>gi|168213529|ref|ZP_02639154.1| GGDEF/HD domain protein [Clostridium perfringens CPE str. F4969]
 gi|170714917|gb|EDT27099.1| GGDEF/HD domain protein [Clostridium perfringens CPE str. F4969]
          Length = 564

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101
           +  +++  +  I L      +  +     L++  + +  L  +  G  +K        + 
Sbjct: 134 ISVVSSAIILAIDLIFSGNADVNIYFQNDLILAGVFV--LTAWTLGFYVKTENDHIKELQ 191

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            L   D L+G+ NH  F   L          NEKLS++F DIDYFK  ND +GH  GD+ 
Sbjct: 192 TLVNEDGLTGVYNHRYFYDKLREKMHISEVENEKLSLIFMDIDYFKHYNDLYGHQKGDEA 251

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSG 213
           +  +   L  +      V R GGEEFA     +SE+EA  +A  +R  +E +      + 
Sbjct: 252 LKKIGKLLKNIARENDLVARYGGEEFAIILPNTSEEEATKIAERIRNKVEKTYFEGQENQ 311

Query: 214 PSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCF 258
           P+ + T+S GIA    K      ++  AD ALY AK   +NRV  +
Sbjct: 312 PNANFTVSVGIAVFPDKAKSELELVKCADDALYRAKFFHKNRVETY 357


>gi|191173526|ref|ZP_03035053.1| MASE2 domain/diguanylate cyclase [Escherichia coli F11]
 gi|190906235|gb|EDV65847.1| MASE2 domain/diguanylate cyclase [Escherichia coli F11]
 gi|323191493|gb|EFZ76755.1| diguanylate cyclase domain protein [Escherichia coli RN587/1]
          Length = 366

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 137 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAE 196

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 197 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 256

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +   ++
Sbjct: 257 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL 316

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 317 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 364


>gi|307721180|ref|YP_003892320.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica
           DSM 16294]
 gi|306979273|gb|ADN09308.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica
           DSM 16294]
          Length = 320

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 93/204 (45%), Gaps = 17/204 (8%)

Query: 67  ENLSLVIISITISLLL----GYISGSIL--KELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           ++ SL    I I  +L     Y   S+    +  I   ++  L+  D L+G+ N      
Sbjct: 112 KDFSLYYAQIIIKKILLPEREYFVASVTDTTQQVILQKKLKNLATKDSLTGIYNRHKANE 171

Query: 121 -------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                      YN + +++  DIDYFK +ND++GH VGD ++  LS  ++          
Sbjct: 172 IIDEEIIRQNKYNSRFAVLMLDIDYFKSVNDSYGHDVGDIILQELSKLILQNTRKSDRFA 231

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEF      ++ + A   A  L  II +      S     +T+S G+      E  
Sbjct: 232 RWGGEEFLVILSQTTAEGAFEYAQKLANIIASYNFTQVS----VLTVSIGVCVYKDGESK 287

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
           + ++ RAD+ALY+AK  GRNRV+ 
Sbjct: 288 AELLKRADEALYIAKNRGRNRVIF 311


>gi|288957768|ref|YP_003448109.1| hypothetical protein AZL_009270 [Azospirillum sp. B510]
 gi|288910076|dbj|BAI71565.1| hypothetical protein AZL_009270 [Azospirillum sp. B510]
          Length = 342

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 60/181 (33%), Positives = 88/181 (48%), Gaps = 9/181 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           S   L E+ +S +   + +  D L+G+ N  AF   L           + LS++  DID+
Sbjct: 159 SSHQLAEMRVSLDSARREALTDALTGIGNRKAFDQMLEEAMETSVRDEQPLSLLMVDIDH 218

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK  ND  GH VGD V+  ++  L           R GGEEFA     +S + A+ LA  
Sbjct: 219 FKTFNDIHGHLVGDHVLKLVARMLTECIKGRDTATRYGGEEFAIILPRTSLENASKLAEQ 278

Query: 199 LRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +R  +   QI     +     + +S G+A+    EP  +++ RADQALY AK+ GRNRV 
Sbjct: 279 VRGFVGARQIVNKARNANYGTVALSVGVAQYRPGEPAMSLVRRADQALYAAKRGGRNRVT 338

Query: 257 C 257
            
Sbjct: 339 V 339


>gi|215485467|ref|YP_002327898.1| diguanylate cyclase AdrA [Escherichia coli O127:H6 str. E2348/69]
 gi|215263539|emb|CAS07869.1| predicted diguanylate cyclase [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 371

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NAPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|74317024|ref|YP_314764.1| diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056519|gb|AAZ96959.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) [Thiobacillus denitrificans ATCC 25259]
          Length = 730

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 84/185 (45%), Gaps = 11/185 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           +E   +  RI   +  D L+GL N ++F+  +              +++F D+D FK +N
Sbjct: 278 RERQDNEQRIRHQAFHDSLTGLPNRNSFLEHISEAIDRSKRSGNPGALLFLDLDRFKLVN 337

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GD+++   + ++           R+ G+EF        + E A LA   ++++
Sbjct: 338 DSLGHDAGDQLLRITASRIQKCLRETDMAFRMSGDEFVVILESVDKGEHAALAA--QRVM 395

Query: 204 ENSQINIS-SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +   + +S SG  + + +S GI         +  ++  AD A+Y AK+ G+N     +  
Sbjct: 396 QEMAVPMSLSGCEVIVNVSIGITTFAGDSADVQALLKEADSAMYRAKQVGQNHYEFHTPD 455

Query: 262 ENNTC 266
            N+  
Sbjct: 456 MNSAA 460


>gi|313498686|gb|ADR60052.1| GGDEF domain-containing protein [Pseudomonas putida BIRD-1]
          Length = 343

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 116/256 (45%), Gaps = 27/256 (10%)

Query: 25  HTFMIYFSIFFSI-FIATVIFIANIFLFYIGLTPFYGLEYILVENLSL------------ 71
            T ++ F++  S+  ++      N+ L  +GL       ++L++  +L            
Sbjct: 80  QTLIMLFAVGMSVSAVSCYSSYRNMTLVSMGLVLLPSTGWLLLQPSTLQQGIALAVLVFA 139

Query: 72  -VIISITISLLLGYISGSILKELFISYNRISQLSR-IDCLSGLLNHSAFISSLGSYNEK- 128
             ++S T SL     +   LK      +R++ ++   D L+GL N  AF  +  + + + 
Sbjct: 140 WFVVSATQSLSSALTTAWRLKHEMQRAHRLAMVASCTDELTGLNNRRAFFDNASAQHVRC 199

Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                 ++++  D+D+FKQIND FGH  GD+V+  +   +          GRLGGEEFA 
Sbjct: 200 RDTGTFMAVLMLDVDHFKQINDTFGHAAGDQVLQRIGAAISTSLRDNDIAGRLGGEEFAI 259

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRAD 241
               +    A  +A  LR  I    +N        +T S G+A  +     +  ++  AD
Sbjct: 260 LLPNTPPDTAIEVAERLRARIAKLCVN----EQHPVTASIGLAFAKAPATELGALLSSAD 315

Query: 242 QALYVAKKSGRNRVVC 257
            A+Y++K SGRNRV  
Sbjct: 316 SAMYLSKVSGRNRVTV 331


>gi|317152096|ref|YP_004120144.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942347|gb|ADU61398.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
          Length = 974

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 59/182 (32%), Positives = 85/182 (46%), Gaps = 9/182 (4%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFF 134
           L Y     + E       + +L+  D L+G  N   F       +     Y   L+++  
Sbjct: 791 LLYSVIHDITERVRLEREMKRLATTDSLTGAANRHEFFRLAELELRRAMRYGHSLAVLML 850

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DIDYFK IND  GH  GD V+  LS  +          GRLGGEEFAA    +      +
Sbjct: 851 DIDYFKSINDTHGHQTGDAVLKALSALVRTTLRDTDIFGRLGGEEFAAVLPETDLAGGVL 910

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253
           +A+ LR+ +   ++ +     +  T+S G+ E    E  I   I RAD+A+Y AK+ GRN
Sbjct: 911 VADRLRRELGALKVRLRD-IEVMFTVSIGLTETRKSERLIDDAINRADEAMYKAKRMGRN 969

Query: 254 RV 255
           RV
Sbjct: 970 RV 971


>gi|317152447|ref|YP_004120495.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942698|gb|ADU61749.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
          Length = 857

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 86/190 (45%), Gaps = 11/190 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           S   +     + +++ + +  D L+GL N + F+  L              ++++ D+D 
Sbjct: 406 SVEDITLRKKAEDQLKRQAFHDPLTGLPNRALFLDHLRMAMERGRRRRHLFAVIYMDLDR 465

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAN 197
           FK IND+ GH  GD+++  ++  L     +   + R GG+EFA      S  ++A  +A 
Sbjct: 466 FKVINDSLGHETGDELLRSVARVLEKCGRSVDTIARFGGDEFAILIEEISASRDAIAIAR 525

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            +   +   Q    +G  +  + S GI  +    +    ++  AD A+Y AK+ G++R  
Sbjct: 526 RILDGVR--QPFTINGNEVFTSASLGIVLKTDGYDRPEALLRDADTAMYRAKEHGKSRFK 583

Query: 257 CFSDIENNTC 266
            F+   ++  
Sbjct: 584 VFNQKMHDQA 593


>gi|254699525|ref|ZP_05161353.1| GAF/GGDEF domain protein [Brucella suis bv. 5 str. 513]
          Length = 364

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS--- 130
           L++G I+     I  +   +  R++  +  D L+ L N       ++   S  + LS   
Sbjct: 170 LMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGKLLTQKKSARDGLSRDG 229

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSS 188
            ++  D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF      G+S
Sbjct: 230 FLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTS 289

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++  I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK
Sbjct: 290 KEQTDIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAK 348

Query: 249 KSGRNRVVCFSD 260
             G+NR   F +
Sbjct: 349 SKGKNRFEYFEE 360


>gi|302878206|ref|YP_003846770.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
 gi|302580995|gb|ADL55006.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
          Length = 908

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 11/210 (5%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           +L  ++S+ ++ +    +        + E   +  +I  L+  D L+GL N       L 
Sbjct: 442 LLEVDVSVQVVQLPDGRIAFQTLFRDITEQKQAALQIEHLAYHDQLTGLPNRRLLHDRLS 501

Query: 124 -------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                    + +L++++ D+D+FK +ND+ GH  GD ++  ++++L+        + R+G
Sbjct: 502 HAISSAVRRDAQLAVIYLDLDHFKDVNDSLGHGTGDALLQVVAERLLGCIRADDTLARMG 561

Query: 177 GEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPIS 234
           G+EF       +    A+  A  +    E S+     G  + IT S GI+          
Sbjct: 562 GDEFVLMLNDLNDADSASTAAEKIMH--ELSRPVCIGGDELRITPSLGISLCPGDGRDAD 619

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            ++  AD ALY AK+ GR     ++   ++
Sbjct: 620 ELLKYADAALYQAKQQGRATYRFYTQALHD 649


>gi|110636309|ref|YP_676517.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Mesorhizobium sp. BNC1]
 gi|110287293|gb|ABG65352.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Chelativorans sp. BNC1]
          Length = 730

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 99/230 (43%), Gaps = 18/230 (7%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK----ELFISYNRISQLS 104
           +  +    P  GL   +    SLV   +  +  + +     L+    EL  S  R   L+
Sbjct: 246 YYVWTADRPGLGLIRQIAPWASLV---LAFAAGIAFYQARKLRRASAELQESEGRARHLA 302

Query: 105 RIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
             D L+GL N +   S L            + +++  D+D FK +ND  GH  GD+VI  
Sbjct: 303 FHDWLTGLPNRARLESRLDDILADLLPGQAEAAVLLLDLDRFKNVNDTLGHRAGDQVIQQ 362

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSGPSI 216
            + +L  + G    V RLGG+EFA      +  EAA  L++ +             G + 
Sbjct: 363 TARRLKDIVGNTGLVARLGGDEFAIVIASRNAVEAASELSDRVLAAF--IPPFQLEGDTA 420

Query: 217 HITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           HI +S GIA           I+ +AD ALY AKK GR R   FS   ++T
Sbjct: 421 HIGVSIGIATAPEAALHREEILRKADIALYEAKKQGRGRYELFSRTMDDT 470


>gi|88797809|ref|ZP_01113397.1| putative sensor protein [Reinekea sp. MED297]
 gi|88779486|gb|EAR10673.1| putative sensor protein [Reinekea sp. MED297]
          Length = 411

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 92/186 (49%), Gaps = 8/186 (4%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           L Y    +   +      ++  +  D L+G+LN  A  + L         +N  L+++F 
Sbjct: 227 LTYSKAELEDIVRQRTEELNHQAMHDSLTGVLNRRALTTRLDEEVQRSRRHNHPLTLLFL 286

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D+FKQ+ND++GH VGD+++      L         + R GGEEFA     ++ +    
Sbjct: 287 DLDHFKQVNDHYGHAVGDQILQETCQALTECIRESDVLARYGGEEFAIILTDTTLEAGHE 346

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           LA  L++   +++ +  +     +T+S G+      + ++ +  RAD ALY AK SGRNR
Sbjct: 347 LAERLQECF-STRFSRHAILEKPLTMSVGLTSLFPTDTLTQLFTRADTALYDAKNSGRNR 405

Query: 255 VVCFSD 260
           +V   D
Sbjct: 406 IVIAQD 411


>gi|153212185|ref|ZP_01947980.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|153827799|ref|ZP_01980466.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|229514368|ref|ZP_04403829.1| GGDEF family protein [Vibrio cholerae TMA 21]
 gi|254284582|ref|ZP_04959549.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|124116737|gb|EAY35557.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|148876644|gb|EDL74779.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|150425367|gb|EDN17143.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|229348348|gb|EEO13306.1| GGDEF family protein [Vibrio cholerae TMA 21]
          Length = 339

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 68/220 (30%), Positives = 111/220 (50%), Gaps = 21/220 (9%)

Query: 58  FYGLEYILVENLSLVIISITISLLLG----------YISGSI------LKELFISYNRIS 101
           F  LE +  +NLS+  +   I  L+           +++  +      +  L     ++ 
Sbjct: 118 FKDLERVEQDNLSIEEVMTVIRRLVSDSKDIRHSTNFLNNQLNAATLEISRLKEQLAKVQ 177

Query: 102 QLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           + +  D LSGL N  AF     +L    +++S++  DID+FK +NDN+GH  GD++I  +
Sbjct: 178 KDALFDSLSGLYNRRAFDGDMFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAI 237

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217
           + +L  +    +   R GGEEFA  A   S + A   A  +R+ IE   + +  SG S+ 
Sbjct: 238 AKRLQSLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVG 297

Query: 218 -ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            IT S G+ E+   + + ++I RAD  LY AK  GRNRV+
Sbjct: 298 SITASFGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 337


>gi|56750182|ref|YP_170883.1| hypothetical protein syc0173_c [Synechococcus elongatus PCC 6301]
 gi|56685141|dbj|BAD78363.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 712

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 89/187 (47%), Gaps = 11/187 (5%)

Query: 82  LGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVF 133
           +G+IS G  + +   +   + + +  D L+GL N                   E L+++F
Sbjct: 266 VGFISFGIDITDRRDNEKALERQACYDFLTGLANRFLLQEQGQELLLLAKRSQEMLAVIF 325

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK INDNFGH VGD+V+  ++ ++         + RL G+EF      +  Q AA
Sbjct: 326 IDLDRFKDINDNFGHEVGDRVLVEVAQRIRQSVRQSDLIARLSGDEFVVILPNTDAQGAA 385

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
            LA  L++ I  +        SI +T S GI+      + +  +I +AD A+Y  K+ GR
Sbjct: 386 TLAQKLQQQI--TPPIAIGDRSIQLTTSLGISLFPVDGDDLEILIKKADTAMYSIKEGGR 443

Query: 253 NRVVCFS 259
           +    F+
Sbjct: 444 DAFSFFT 450


>gi|58581502|ref|YP_200518.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58426096|gb|AAW75133.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 569

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 8/170 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNF 146
                 + + S  D L+GL N      SL             LS++  D+D+FKQ ND+ 
Sbjct: 389 LRLRESLRRQSIRDALTGLYNRRYLEESLSHELARCARRGLPLSVLMLDVDHFKQFNDSQ 448

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD ++A + + L+    T     R GGEEF      +  +EA  +A  +R  I   
Sbjct: 449 GHAGGDLLLAAVGELLLTRLRTEDVACRYGGEEFTVLLPEADGEEALRVAEQIRGYIAAL 508

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
            ++  +     +T S G+A      E  +++I +AD ALY AK  GRNRV
Sbjct: 509 AVSDEARALPKVTASIGVASFPADGEQGASLIQKADAALYRAKHRGRNRV 558


>gi|120553435|ref|YP_957786.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120323284|gb|ABM17599.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 461

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 8/174 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           +++        Q +  D L+ L N  A+   L         Y   L++   D+D FK+IN
Sbjct: 288 EQMQAQVREERQRALTDLLTQLPNREAWQERLSFEYNRWLRYRHPLTVAVLDVDLFKRIN 347

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D++GH  GD+V+  ++ ++     +  F+ R GGEEF      +   EA  + + LR+ +
Sbjct: 348 DSYGHKAGDRVLQLVAREMSTRLRSTDFIARFGGEEFVVLLPETPTDEARKVLDSLREHV 407

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                + S G  + IT SAG+      +   ++  RAD+ALY AK  GRNRV  
Sbjct: 408 SGLPFHFS-GEPVSITFSAGLTGFQDDDTEESVFDRADRALYQAKDEGRNRVSV 460


>gi|217973215|ref|YP_002357966.1| diguanylate cyclase with extracellular sensor [Shewanella baltica
           OS223]
 gi|217498350|gb|ACK46543.1| diguanylate cyclase with extracellular sensor [Shewanella baltica
           OS223]
          Length = 912

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 12/205 (5%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           L YI+   + L ++ + + LL+       + +  ++  R+  ++  D L+ L N +    
Sbjct: 709 LRYIVFGVIILCLVMVAV-LLVNRRLNREITQRLVAEKRLLHVANHDALTQLPNRALLDD 767

Query: 121 SL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L              +++F D+D FKQIND  GHP+GD+++  ++ +L  V      V 
Sbjct: 768 RLAQALLSHQREQAHFALLFIDLDGFKQINDQHGHPIGDELLVQVAQKLTKVIRGSDTVA 827

Query: 174 RLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R GG+EF            A  +A+++ + +  S   +  G S+ I +S G+       +
Sbjct: 828 RFGGDEFVILLNRVQDLDAATQVADNILQAL--SSPLLIQGVSVSIAVSMGVVIYPRDGD 885

Query: 232 PISTIIYRADQALYVAKKSGRNRVV 256
               ++ +ADQ +Y AK  G     
Sbjct: 886 TAIGLLKKADQLMYQAKSCGGRCYR 910


>gi|257060050|ref|YP_003137938.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8802]
 gi|256590216|gb|ACV01103.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8802]
          Length = 732

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 13/210 (6%)

Query: 68  NLSLVIISITIS-LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------ 120
           N  + ++S+  S + +     S  + L     ++ Q++ +D L+ + N   F        
Sbjct: 239 NAEIGLLSLLASQIAIAIQQDSFYQHLNAINQKLEQIAFVDRLTQISNRCYFEQYFTQEW 298

Query: 121 -SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGE 178
             +    + LS++  D+D+FK  ND +GH  GD  +  ++  +   +      V R GGE
Sbjct: 299 RRMAREKQPLSLILCDVDFFKSYNDTYGHLEGDFCLQKIAQAINTSIHRPGDLVARYGGE 358

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPI--ST 235
           EF      +    A  +A  +R  ++  ++ +     S  +T+S G+A     E +  + 
Sbjct: 359 EFVILLPNTKASGALYIAEQIRSQVKGLRMTSACQEVSPFVTLSLGVASFIPDESLLPAM 418

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           +I  AD ALY AKK GR+RV  F  ++N+T
Sbjct: 419 LISEADHALYEAKKQGRDRV-GFKAVDNST 447


>gi|170702262|ref|ZP_02893163.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia ambifaria IOP40-10]
 gi|170132838|gb|EDT01265.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia ambifaria IOP40-10]
          Length = 357

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+GL N       L +   +       LS++  D+D FK  N
Sbjct: 167 QQLLEANLELRRLTHSDGLTGLSNRRYLDEYLAAEWRRGTRERSELSLLMIDVDNFKLYN 226

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD V+  ++  +    G +     R GGEEFA     +S   A +L   +R  
Sbjct: 227 DTYGHVSGDSVLKQIAATIERCLGQSGDLAARFGGEEFAVVMPATSPGAARLLGEKIRLA 286

Query: 203 IENSQINISSGPSIH-ITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IE  ++  +   +   +TIS G A        P +++I  AD+ALY AK  G+NRV  
Sbjct: 287 IEGLRLEHAHSSTGRYVTISIGGASIVPAPGVPTTSLIEAADRALYRAKHDGKNRVEI 344


>gi|146311462|ref|YP_001176536.1| diguanylate cyclase [Enterobacter sp. 638]
 gi|145318338|gb|ABP60485.1| diguanylate cyclase [Enterobacter sp. 638]
          Length = 473

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 74/261 (28%), Positives = 119/261 (45%), Gaps = 14/261 (5%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE 67
            + +WL     L   +    + + S  F      +I I  +   +IG + +Y        
Sbjct: 200 LIILWLIALTTLLIITRLRNLFWASGTFLCTCYVIILITLLPADFIGGSVWYSAR----- 254

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
            L     S+ I L L +   S+ +   I Y +  Q S  D L+ L N S F  SL     
Sbjct: 255 -LFETTASLLIILTLLHDVFSLYRNSHIKYQQSYQNSIRDALTRLYNRSYFYESLNQALG 313

Query: 126 ----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
               +  +S++  D+DYFK+INDN+GH  GDKV+ F+++ L+          R+GGEEF 
Sbjct: 314 KITDSHPVSVIVCDLDYFKRINDNYGHLQGDKVLQFVANLLMDSVRPQDITARIGGEEFV 373

Query: 182 AAALGSSEQEAAILANDLRKIIENS-QINISSGPSIHITISAGIAERCH-KEPISTIIYR 239
                +  + A ++A  +R  + +  +I         +TIS GI             + R
Sbjct: 374 LLLSNTHSEAARLVAERIRLSLSSFDRITTEGMLPESVTISMGIYTATTLPVTAEECVER 433

Query: 240 ADQALYVAKKSGRNRVVCFSD 260
           AD+A+Y AK++GRNRVV + +
Sbjct: 434 ADKAMYEAKETGRNRVVVYQE 454


>gi|148546421|ref|YP_001266523.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1]
 gi|148510479|gb|ABQ77339.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1]
          Length = 754

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 51/180 (28%), Positives = 89/180 (49%), Gaps = 10/180 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           +L +L  +   + Q +  D L+ LLN   F                +L+++F DID+FK+
Sbjct: 275 LLSQLDQARASLQQAAHYDALTNLLNRRGFNQVFAERLVETQASENRLAVMFLDIDHFKR 334

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD+++  ++  +     +   V R GG+EF      +S  EA  LA  + +
Sbjct: 335 INDSLGHDAGDELLKVIAHHIKAATRSHDLVARFGGDEFCVVTSLNSRDEARHLAQRIMQ 394

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +++  I++  G  + +T S GI+           ++  AD ALY +K +GRN +  F+D
Sbjct: 395 RMKD-PIDL-GGRRMVMTTSIGISIFPDDGGTAEELLKHADLALYQSKDNGRNSLNFFND 452


>gi|309792407|ref|ZP_07686874.1| diguanylate cyclase [Oscillochloris trichoides DG6]
 gi|308225562|gb|EFO79323.1| diguanylate cyclase [Oscillochloris trichoides DG6]
          Length = 852

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 12/183 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKL-SIVFFDIDYFKQIND 144
           E      +++  ++ D L+GL N   F  +L        ++E++ +++F D+D FKQIND
Sbjct: 407 EQQEHTRQLAYQAKHDALTGLPNRLLFEENLRRAIDGARHSERMIAVLFIDLDRFKQIND 466

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
             GH VGD ++  L+ +          + R GG+EF        + Q+   +A+ L +++
Sbjct: 467 TLGHTVGDTLLIQLARRFESCVRGSDTLARRGGDEFMLVLTDIVNAQQVVKVAHRLMELL 526

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +       +G  + I+ S G +      E   ++  RAD A+Y AK   RN    F    
Sbjct: 527 Q--PPFHIAGHELFISASIGASIYPTDGEDPDSLQRRADAAMYRAKHL-RNNFQFFDPTT 583

Query: 263 NNT 265
           N T
Sbjct: 584 NQT 586


>gi|301017564|ref|ZP_07182238.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
 gi|300400058|gb|EFJ83596.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
          Length = 430

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 258 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCTLARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|299529288|ref|ZP_07042728.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298722732|gb|EFI63649.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 522

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 22/228 (9%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYIL-VENLSLVIISITISLLLGYISGSILKELFISYNRI 100
            +  A + L  + +    G   IL +   +    S+           ++ ++L  +   +
Sbjct: 305 ALLTAGVVLGLLAVVTLIGWRLILLIRQRAQAETSLM----------AVREKLLDANLEL 354

Query: 101 SQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +L   D L+GL N   F                 LS++  D+D+FK  ND +GH  GD+
Sbjct: 355 ERLVTQDSLTGLANRRRFDEVLQLEVRRAARDGTVLSLLLIDLDHFKGFNDRYGHVAGDE 414

Query: 154 VIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            +  +S QL      +     R GGEE A     ++ + A  +A +L K I    I   S
Sbjct: 415 CLKAVSRQLELSAKRSGDLAARYGGEELAIILPNTALEGAMRVAEELLKCIRGLDIAHES 474

Query: 213 GPSIHITISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRNRVVC 257
               H+T+S G A    +  ++    ++  ADQALY AK +GRNR  C
Sbjct: 475 SQFGHVTVSIGAASMQGRHGLASPLDLVEAADQALYRAKAAGRNRAEC 522


>gi|157375530|ref|YP_001474130.1| signal transduction protein [Shewanella sediminis HAW-EB3]
 gi|157317904|gb|ABV37002.1| signal transduction protein containing a membrane domain, an EAL
           and a GGDEF domain [Shewanella sediminis HAW-EB3]
          Length = 817

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 34/274 (12%)

Query: 19  LESFSPHTFMIYFS-----IFFSIFIATVIFIANIFLFYIG---LTPFYGLEYILVE--- 67
           L +  P T ++ +S     +   I ++TV F   + +F      + P   L +  +    
Sbjct: 276 LHALLPETILLQYSRDMSWLVTIITLSTVAFAIPLLIFLSHFQIIRPLNKLHHAFLRLGN 335

Query: 68  NLSLVIISITISLLLGYI---SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           N+ L+ +  +    L  +      +  +LF S  +I +L+  D L+GL N   F   L  
Sbjct: 336 NVELIQVKTSGDDELNELGKEFNRMSLKLFKSNEKIRELAFNDPLTGLPNRFMFTKHLNL 395

Query: 125 YNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF------ 171
             E       +L+++F D+D FK IND+ GH  GD+++  + D+L     +  F      
Sbjct: 396 SLESAKCDRGQLAVMFIDLDNFKHINDSLGHQSGDQLLHEIGDRLHRNLRSKDFCEHFSD 455

Query: 172 ---VGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
              V RLGG+EF        S   A  +A  + +II  SQ  + SG S +I+ S GIA  
Sbjct: 456 SDMVARLGGDEFTVFLGELPSINIAEKVAKRILEII--SQPILLSGKSYYISASIGIACY 513

Query: 228 CHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
                    +I  AD A+Y AKK G+     FSD
Sbjct: 514 PQNGVTTQELIKNADIAMYHAKKKGKGGYQHFSD 547


>gi|116053078|ref|YP_793397.1| hypothetical protein PA14_65090 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588299|gb|ABJ14314.1| hypothetical protein PA14_65090 [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 673

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 11/185 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   ++   +  D L+GL N    +            +   ++++  D+D+FK IN
Sbjct: 476 RQLQMREAQLQYAAHHDPLTGLGNRRHLMEFAESALDDARRHGNSMALLLIDLDHFKPIN 535

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKI 202
           D  GH  GD V+  ++ +L     T   V RLGG+EFA    GS+ EQ A  +A  L + 
Sbjct: 536 DTHGHDAGDFVLQNVAQRLRHCVRTEDCVARLGGDEFAVLVGGSNAEQHARDIAERLLR- 594

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            E ++    +   + IT S G+A           +   ADQALY  K +GR      +D 
Sbjct: 595 -ELAKPVEFAKQWLVITPSIGVALFPGDALQFGKLYKAADQALYRVKGAGRAGYAMAADD 653

Query: 262 ENNTC 266
           E  T 
Sbjct: 654 ERETA 658


>gi|269839222|ref|YP_003323914.1| response regulator receiver modulated diguanylate cyclase
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269790952|gb|ACZ43092.1| response regulator receiver modulated diguanylate cyclase
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 303

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 53/194 (27%), Positives = 93/194 (47%), Gaps = 11/194 (5%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYN 126
           + +   L+  +   S+ ++L    +++ Q +RID L+G  N        ++  +    Y 
Sbjct: 108 VELRARLIAAHRITSLHQQLKELNDQLFQQARIDSLTGTYNRLRLQEDLASMDNRAARYG 167

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
              ++  FDID+FK+ ND +GH  GD+++  ++  ++        V R GGEEF      
Sbjct: 168 HTYALALFDIDHFKRYNDTYGHGAGDRMLCTVARTILSCCRASDSVYRYGGEEFLVLLPE 227

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIH--ITISAGIAERCH--KEPISTIIYRADQ 242
                A  +A+ +R  ++   I     P     +T+SAG+A+          T++  AD+
Sbjct: 228 QRCTTAVKVADRVRASVQGLGIPHEGRPDDPKVVTVSAGVADLDSARDRSAQTVLQLADE 287

Query: 243 ALYVAKKSGRNRVV 256
           ALY AK +GRN VV
Sbjct: 288 ALYRAKHAGRNTVV 301


>gi|254522461|ref|ZP_05134516.1| diguanylate cyclase [Stenotrophomonas sp. SKA14]
 gi|219720052|gb|EED38577.1| diguanylate cyclase [Stenotrophomonas sp. SKA14]
          Length = 524

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 11/184 (5%)

Query: 82  LGYISGSILKELFISYNR---ISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFD 135
           +  +  ++L       +R   +++ SR D L+GLLN      +L +        +I+  D
Sbjct: 341 VAQLKHAVLHSFNALQDRIGTLNRASRTDPLTGLLNRRGLQQALDALQVQGIPFAILALD 400

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID FK IND  GH VGD  I  ++DQ+         + R GGEEF     G + + A   
Sbjct: 401 IDRFKSINDAHGHDVGDAAIVHIADQMRRYSRDSDILCRAGGEEFLLLLPGINAEPARQA 460

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
              LR+ I +        P   IT+S G+A            +  AD+ALY+AK+ GRNR
Sbjct: 461 GERLRQHIADHPFE----PVGTITVSLGVAHFPSFHVDAEQALRLADKALYMAKEQGRNR 516

Query: 255 VVCF 258
           VV +
Sbjct: 517 VVVY 520


>gi|149920376|ref|ZP_01908846.1| FHA domain/GGDEF domain protein [Plesiocystis pacifica SIR-1]
 gi|149818818|gb|EDM78260.1| FHA domain/GGDEF domain protein [Plesiocystis pacifica SIR-1]
          Length = 297

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 9/168 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           +  I +LS +D L+ + N   F+ +L         Y+  L+++ FDID+FK+ ND +GH 
Sbjct: 128 HEEIFRLSTVDGLTQVFNRRYFMETLERELSRARRYDRPLALLIFDIDHFKRCNDTYGHR 187

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  +++ + +       V R GGEEF         + A+  A  +RK+I +    
Sbjct: 188 AGDFVLRRIAELVTMRARKVDVVSRYGGEEFTVILPEIDIRGASAFAEKIRKLIADETF- 246

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           I  G  I +TIS G+AE          +I  AD+ LY AK  GRNRVV
Sbjct: 247 IFEGRKIPVTISIGVAEIGPSVANADDMIQTADRRLYAAKTGGRNRVV 294


>gi|160900556|ref|YP_001566138.1| PAS/PAC sensor-containing diguanylate cyclase [Delftia acidovorans
            SPH-1]
 gi|160366140|gb|ABX37753.1| diguanylate cyclase with PAS/PAC sensor [Delftia acidovorans SPH-1]
          Length = 1015

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 9/179 (5%)

Query: 91   KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQI 142
             E     +++  L+  D L+G+ N  AF+  L    + L        +++  DID+FKQ+
Sbjct: 830  TERQQRESQLETLALTDALTGIPNRRAFMERLTMELDHLRSGLVAHSTLIMLDIDHFKQV 889

Query: 143  NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
            ND +GH VGD V+  L   +         VGRLGGEEFA     +  +     A  LR+ 
Sbjct: 890  NDGYGHAVGDIVLKELLASVAQEMRKEDMVGRLGGEEFAVLLSDTDAEVGLRRAESLRET 949

Query: 203  IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +    I+      +HITIS G+ E    +      + RAD ALY +K++GRN+   +S+
Sbjct: 950  VAARAIDAGLAGDLHITISLGVYELQRSDASAQGCLERADAALYYSKRNGRNQSTLWSE 1008


>gi|74312287|ref|YP_310706.1| hypothetical protein SSON_1790 [Shigella sonnei Ss046]
 gi|73855764|gb|AAZ88471.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|323168223|gb|EFZ53909.1| hypothetical protein SS53G_1536 [Shigella sonnei 53G]
          Length = 430

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 258 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|330895767|gb|EGH28056.1| GGDEF domain-containing protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 509

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 12/192 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIV 132
           L L ++    L+    + + ++ L+  D L+GL N                   ++LS++
Sbjct: 312 LWLTWLLCRELRRRHRAEDALASLAATDGLTGLDNRRQLDEAMEIEWARAQRSGKQLSLL 371

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQE 191
             D+D+FK  N+  GH  GD+ +  ++  +      P   + R GGEEF      +    
Sbjct: 372 MIDVDHFKAFNERHGHQGGDEALRLIAQTISYCIRRPGDRIARYGGEEFVVVLPETDLPG 431

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKK 249
           A ++A  +RK  E+  +  ++  +  IT+S G+A       + +      AD+ALY AK 
Sbjct: 432 AMLIAEKIRKAAESLPLFRNAEHA--ITVSIGVASEVVRQGDKLEAFFGVADKALYQAKD 489

Query: 250 SGRNRVVCFSDI 261
           +GRNRV   S +
Sbjct: 490 NGRNRVEYRSSV 501


>gi|301384589|ref|ZP_07233007.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059333|ref|ZP_07250874.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302132761|ref|ZP_07258751.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 915

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 11/194 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------ 130
           T ++LL        +EL  +  R+   +  D L+GL N S     L    +         
Sbjct: 462 TANVLLEARVRDRTRELDQANARLQHENSHDSLTGLPNRSQLQHRLRQAWQDFCRNGRQL 521

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            ++F D+D FK IND+ GH  GD ++   +++L         + RLGG+EFA  ++ +  
Sbjct: 522 VVMFIDLDRFKMINDSLGHHCGDILLIQAAERLRSCMREEDLLARLGGDEFAVLSIDTPL 581

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
           Q    +A  +    E  Q  +    +I  + S G+  A+    +  + ++  AD A+Y  
Sbjct: 582 QTGTGIAQRILTAFE--QPFVIDDHTIFSSCSIGVVGADSQFHQEPADLLRDADTAMYRV 639

Query: 248 KKSGRNRVVCFSDI 261
           K  GR+    F+  
Sbjct: 640 KNGGRDSFAVFNQA 653


>gi|258624398|ref|ZP_05719345.1| GGDEF family protein [Vibrio mimicus VM603]
 gi|258583245|gb|EEW08047.1| GGDEF family protein [Vibrio mimicus VM603]
          Length = 371

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 9/177 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           K+ + +  ++  LS  D L+GL N    +  L           +    V  D+D FK++N
Sbjct: 193 KQFYQANRQLEALSLTDSLTGLPNRRKAMHQLALHWNLSREQKKPFVCVMIDVDGFKEVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D++GH +GDKV+  ++  L   F     V RLGG+EF A    +       +A  +   +
Sbjct: 253 DSYGHDIGDKVLTIIAHALKDHFRNDDLVCRLGGDEFLAICPNTDAVSEVHIAEHVCDEV 312

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           E  +I +  G     ++S G+AE     +    ++  ADQA+Y+AK +G+NRV  F+
Sbjct: 313 ELLEIPV-EGIHWQGSVSMGVAEFDPSMKDHHELLRAADQAVYLAKNNGKNRVCAFN 368


>gi|289579196|ref|YP_003477823.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter italicus
           Ab9]
 gi|289528909|gb|ADD03261.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter italicus
           Ab9]
          Length = 554

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 16/217 (7%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
            IG      ++  + +  S+ II I +      I  +        Y  +++ S  D L+ 
Sbjct: 344 AIGCLAVLHVDTNVFDEDSVRIIEIIVDQASVAIINA------KRYYEVTKKSITDPLTK 397

Query: 112 LLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
             N   F  +L          +E +S++ FD+D FK IND +GH +GD+V+  ++ ++  
Sbjct: 398 TYNRRYFNDALMENIMRADENSEPVSLIMFDLDNFKLINDTYGHLIGDEVLKEVAKRIKN 457

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
              +   V R GGEEFA      + ++A  +A  +R  + +  +    G  IHITI+ G+
Sbjct: 458 NVRSDDIVARFGGEEFAVILPKLTAEQAYTIAERIRSEVSSKPVKTEKG-DIHITITGGV 516

Query: 225 AERCHK-EPISTIIYRADQALYV-AKKSGRNRVVCFS 259
           A+   K +    +I  AD+ALY   K  GRN++  + 
Sbjct: 517 ADYPRKADSAEKLISHADRALYAGGKSKGRNKIAIYE 553


>gi|26987880|ref|NP_743305.1| GGDEF domain-containing protein [Pseudomonas putida KT2440]
 gi|24982585|gb|AAN66769.1|AE016305_4 GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 754

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 91/180 (50%), Gaps = 10/180 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNE---KLSIVFFDIDYFKQ 141
           +L +L  +   + Q +  D L+ LLN   F       L  +     +L+++F DID+FK+
Sbjct: 275 LLSQLDQARASLQQAAHYDALTNLLNRRGFNQVFAERLVEHQASENRLAVMFLDIDHFKR 334

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD+++  +++ +         V R GG+EF      +S  EA  LA  + +
Sbjct: 335 INDSLGHDAGDELLKVIANHIKAATRNHDLVARFGGDEFCVVTSLNSRDEARHLAQRIMQ 394

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +++  I++  G  + +T S GI+           ++  AD ALY +K +GRN +  F+D
Sbjct: 395 RMKD-PIDL-GGRRMVMTTSIGISIFPDDGSTAEELLKHADLALYQSKDNGRNSLNFFND 452


>gi|323703123|ref|ZP_08114777.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531900|gb|EGB21785.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfotomaculum nigrificans DSM 574]
          Length = 547

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 9/182 (4%)

Query: 84  YISGSI--LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFD 135
           YI G +  + E   +  ++  L+  D L+ + N  +   +L    EK       +++  D
Sbjct: 93  YIMGIMDDIDERKKTEKKLQYLATHDSLTNIPNRYSLEEALRLAVEKAKTGLESALLLID 152

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID FK +ND  GH  GDK++   ++ L        FV R GG+EFA    G  + E   +
Sbjct: 153 IDNFKLVNDTMGHTAGDKLLVQFTEILQKNIREGDFVARFGGDEFAIIIEGIEKNEVLDM 212

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A+ +R  +  +++ I     ++++IS GI           I+ +AD ALY AK+ GRNRV
Sbjct: 213 ADRIRNAVYENEV-IVGSTRLNLSISIGIVLIDGTLDYQKILSKADIALYKAKEEGRNRV 271

Query: 256 VC 257
             
Sbjct: 272 AY 273


>gi|301025468|ref|ZP_07189015.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
 gi|331656437|ref|ZP_08357399.1| protein AdrA [Escherichia coli TA206]
 gi|300395983|gb|EFJ79521.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
 gi|315299614|gb|EFU58862.1| diguanylate cyclase domain protein [Escherichia coli MS 16-3]
 gi|323976135|gb|EGB71228.1| diguanylate cyclase domain-containing protein [Escherichia coli
           TW10509]
 gi|331054685|gb|EGI26694.1| protein AdrA [Escherichia coli TA206]
          Length = 371

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NTPQVMLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|171319581|ref|ZP_02908678.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           MEX-5]
 gi|171095192|gb|EDT40187.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           MEX-5]
          Length = 516

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQIND 144
              +   I  L+R D L+GL N     + LG             L++++ D+D FK IND
Sbjct: 331 RRRAEQHIRHLARHDALTGLPNRHELHAELGRRLAHRPRVPSPALAVMYLDLDGFKAIND 390

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD+V+  ++++L           R+GG+EF  A   ++ Q  +ILA  + + I 
Sbjct: 391 RFGHQAGDEVLTLVAERLGKTLPPGELAARIGGDEFVVAIDDTTMQACSILAARIIRQI- 449

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++   +S G ++ + IS GIA          +I +AD ALY AK  G+     +S
Sbjct: 450 SAPYTLSIGATVSLGISIGIALDDGHGSPDELIRQADSALYDAKSGGKGIYRFYS 504


>gi|254224741|ref|ZP_04918357.1| GGDEF family protein [Vibrio cholerae V51]
 gi|125622804|gb|EAZ51122.1| GGDEF family protein [Vibrio cholerae V51]
          Length = 339

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 68/220 (30%), Positives = 111/220 (50%), Gaps = 21/220 (9%)

Query: 58  FYGLEYILVENLSLVIISITISLLLG----------YISGSI------LKELFISYNRIS 101
           F  LE I  +NLS+  +   I  L+           +++  +      +  L     ++ 
Sbjct: 118 FKDLERIEQDNLSIEEVMTVIRRLVSDSKDIRHSTNFLNNQLNAATLEISRLKEQLAKVQ 177

Query: 102 QLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           + +  D LSGL N  AF     +L    +++S++  DID+FK +NDN+GH  GD++I  +
Sbjct: 178 KDALFDSLSGLYNRRAFDGDIFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAI 237

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217
           + +L  +    +   R GGEEFA  A   S + A   A  +R+ IE   + +  +G S+ 
Sbjct: 238 AKRLQSLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRNGQSVG 297

Query: 218 -ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            IT S G+ E+   + + ++I RAD  LY AK  GRNRV+
Sbjct: 298 SITASFGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 337


>gi|89092313|ref|ZP_01165267.1| sensory box protein [Oceanospirillum sp. MED92]
 gi|89083401|gb|EAR62619.1| sensory box protein [Oceanospirillum sp. MED92]
          Length = 677

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 11/182 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           EL    N + Q++  D L+GL N  AF+ SL            + ++ F D+D FKQIND
Sbjct: 230 ELEQQKNSLRQIAEHDSLTGLANREAFLKSLNEVIIHCSTNKRRAAVFFIDLDKFKQIND 289

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF-AAAALGSSEQEAAILANDLRKII 203
           + GH  GD V+  ++ +          + R+GG+EF          ++AA LA  L   +
Sbjct: 290 SMGHSAGDAVLIEMAHRFTSTLRKSDSLARIGGDEFTVIIDPLYESKDAAELAKKLIASL 349

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           E  +       ++++  S GIA           ++  AD A+Y AKK+G N    ++ + 
Sbjct: 350 E--EPYEYEDQTLYLNTSIGIAVYPEDGTTPQELMKNADSAMYQAKKAGGNTFHFYNRLM 407

Query: 263 NN 264
           N 
Sbjct: 408 NQ 409


>gi|258623854|ref|ZP_05718808.1| sensory box/GGDEF family protein [Vibrio mimicus VM603]
 gi|258583843|gb|EEW08638.1| sensory box/GGDEF family protein [Vibrio mimicus VM603]
          Length = 584

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 85/181 (46%), Gaps = 11/181 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +LS +D L+ + N   F   L           + LSI+  D+D+FK  N
Sbjct: 397 EQLEAANQELERLSFLDSLTQVANRRRFDEQLHTLWHLHAREGKPLSIILCDVDFFKDYN 456

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH +GD+ +  ++     V       V R GGEEF      + +  A ++A  + + 
Sbjct: 457 DAYGHLMGDETLKQVAIAFTQVANRQSDCVARYGGEEFGILLPNTPQSGAVLIAERIHEK 516

Query: 203 IENSQINISSGP-SIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +  I  +    +  IT+S G+       ++    I+  ADQALY AK SGRN+   + 
Sbjct: 517 MRSLAIPHAHSKIADRITVSLGMVTHIPSPEDVPEQILALADQALYQAKASGRNQTSMYE 576

Query: 260 D 260
           D
Sbjct: 577 D 577


>gi|226356672|ref|YP_002786412.1| c-di-GMP phosphodiesterase A [Deinococcus deserti VCD115]
 gi|226318662|gb|ACO46658.1| putative c-di-GMP phosphodiesterase A [Deinococcus deserti VCD115]
          Length = 821

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 8/166 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGH 148
           L  +  R++  +  D L+GL+N +AF ++L +      + L ++F D+D+FKQ+ND  GH
Sbjct: 375 LQEAQERLAYQAGHDALTGLMNRAAFEATLEAAVLGTQDALGVLFIDLDHFKQVNDTLGH 434

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           PVGD ++  ++ +L+        V R GG+EF        E EAA  A   ++I+E   +
Sbjct: 435 PVGDALLVQVAQRLLQCVRDHDLVARQGGDEFTVLLRNVQEHEAAERAA--QRILEALSV 492

Query: 209 NIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
            +  +G  + +T S GIA        ++T+   AD A+Y+AK+  R
Sbjct: 493 PVELAGRQLTVTASIGIALFPQDGTDVTTLQKNADLAMYLAKRERR 538


>gi|153950730|ref|YP_001402464.1| diguanylate cyclase [Yersinia pseudotuberculosis IP 31758]
 gi|152962225|gb|ABS49686.1| diguanylate cyclase (GGDEF) domain protein [Yersinia
           pseudotuberculosis IP 31758]
          Length = 384

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 118/256 (46%), Gaps = 22/256 (8%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLLLGYI 85
           +  S+F   FI+T+    N   F +   P   +  IL++   N+  +I +I + L+   +
Sbjct: 126 LLLSLFTIFFISTIALSDNFLAFCLHTAP-SAITVILLDDFHNIFRIIFTIMLPLIGFSL 184

Query: 86  SGSILKE-----------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LS 130
              +L+            L     + S LS ID L+ L N     S L +   +      
Sbjct: 185 HHLMLRRTDNFTRKLVDHLSNEREKFSDLSMIDPLTSLYNRRGLESKLETLLSQSPGNHY 244

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  DID+FK  NDN+GH +GD+ +  +S  +     +   V R GGEEF       SE+
Sbjct: 245 VLLLDIDHFKAYNDNYGHTMGDQALVRISAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEE 304

Query: 191 EAAILANDLRKIIENSQINISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAK 248
            A+ LA  +R+ +    I       +   +T+SAGI+     +  +++   AD+ALY AK
Sbjct: 305 YASQLAERVRQRVLGLDIPHVFNHKVSTTVTLSAGISPLQAYDLAASL-KAADEALYRAK 363

Query: 249 KSGRNRVVCFSDIENN 264
           ++GRN +    D  +N
Sbjct: 364 RNGRNNIEFAKDELSN 379


>gi|172063342|ref|YP_001810993.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           MC40-6]
 gi|171995859|gb|ACB66777.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria
           MC40-6]
          Length = 516

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 9/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQIND 144
              +   I  L+R D L+GL N     + L              L++++ D+D FK IND
Sbjct: 331 RRRAEQHIRHLARHDALTGLPNRHELHAELRRRLAHRPRVPSPALAVMYLDLDGFKAIND 390

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD+V+  ++++L           R+GG+EF  A   ++ Q  +ILA  + + I 
Sbjct: 391 RFGHQAGDEVLTQVAERLGKTLPPGELAARIGGDEFVVAIDDTTMQACSILAARIIRQI- 449

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++   +S G ++ + IS GIA          +I +AD ALY AK  G+     +S
Sbjct: 450 SAPYTLSIGATVSLGISIGIALDDGHGSPDELIRQADSALYDAKSGGKGIYRFYS 504


>gi|78221920|ref|YP_383667.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter metallireducens GS-15]
 gi|78193175|gb|ABB30942.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter metallireducens GS-15]
          Length = 820

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYF 139
              + E   S   I +L+  D L+ L N S F   L     +       ++++F D+D F
Sbjct: 378 AHDISERKRSEEEIRRLAFYDPLTRLPNRSLFQDKLAQAIRRSRTDGDMIALLFLDLDRF 437

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K IND  GH  GD+++  ++ +L        F+ RLGG+EF     G   ++    LA+ 
Sbjct: 438 KDINDTLGHAYGDQLLLAVAARLGDNLRPTEFLARLGGDEFVFLVTGLRDKRSVGSLAHS 497

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +++ N+   I     + I+ S GIA      +   T++  AD ALY AK+ GRN    
Sbjct: 498 ILELL-NTPFEIDD-KELFISTSIGIALSPGDGDDGDTLLTHADMALYAAKEQGRNAFSF 555

Query: 258 FSDIENNTC 266
           FS+  N   
Sbjct: 556 FSEELNREA 564


>gi|66045668|ref|YP_235509.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63256375|gb|AAY37471.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 969

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 11/194 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------ 130
           T ++LL        +EL  +  R+   +  D L+GL N S     L    +         
Sbjct: 516 TANVLLEARVRDRTRELDRANARLQHENSHDSLTGLPNRSHLQYRLRQAWQDFCRNGQQV 575

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            ++F D+D FK IND+ GH  GD ++   +++L         + RLGG+EFA  ++ +  
Sbjct: 576 IVMFIDLDRFKMINDSLGHHCGDILLVQAAERLRSCMRERDLLARLGGDEFAVLSIDTPL 635

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
           Q    +A  +    E  Q  +    ++  + S G+  A+    +  + ++  AD A+Y  
Sbjct: 636 QTGTEIAQRILTAFE--QPFVIDDHTVFSSCSIGVVGADIRFHQEPADLLRDADTAMYRV 693

Query: 248 KKSGRNRVVCFSDI 261
           K  GR+    F+  
Sbjct: 694 KNGGRDSFAVFNQA 707


>gi|299542033|ref|ZP_07052352.1| transmembrane protein [Lysinibacillus fusiformis ZC1]
 gi|298725456|gb|EFI66101.1| transmembrane protein [Lysinibacillus fusiformis ZC1]
          Length = 522

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 8/161 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
              S +D L+G+ N     S L  +       +I+  D+D+FK +ND +GH VGDKV+ F
Sbjct: 360 KDQSTVDPLTGITNRRTMDSMLAEWLASKVPHAIILLDLDHFKSVNDTYGHAVGDKVLQF 419

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           L+ Q+  V        R GGEEF      ++ +EA ++A  LRK + ++     S     
Sbjct: 420 LARQMESVAREGDVCCRYGGEEFVILLPNTTIEEATLVAEQLRKTLADT----VSPCGRP 475

Query: 218 ITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
           IT+SAGIA           +I  AD ALY+AK+ GRN+V  
Sbjct: 476 ITLSAGIAAYPAMAHTTEALIEAADDALYLAKQEGRNQVKV 516


>gi|294653544|ref|NP_714781.2| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
 gi|293630744|gb|AAN51796.2| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
          Length = 172

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 61/169 (36%), Positives = 92/169 (54%), Gaps = 12/169 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFIS------SLG-SYNEKLSIVFFDIDYFKQINDNFGHPV 150
           N++S+L   + L+G+ N   F+       +L   +  + +I+  DID+FKQ+ND FGH  
Sbjct: 2   NQVSKLIHTNPLTGIWNRRGFLKLTQRSIALENRHKNEWAILMIDIDHFKQVNDRFGHDA 61

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDK +  ++  L         V R GGEEFA    G  ++ +  +A +LRK +EN QI +
Sbjct: 62  GDKTLIRVAQILSRSIRQTDVVCRWGGEEFAIFLCGVGQEISINIAEELRKEVEN-QIRL 120

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             G    +T+S G++    K+ +      ADQALY AK SGRNRV  F+
Sbjct: 121 KDGN--PVTLSIGVS--GGKQNLEEAFTNADQALYQAKTSGRNRVCAFN 165


>gi|307727606|ref|YP_003910819.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1003]
 gi|307588131|gb|ADN61528.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1003]
          Length = 522

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 9/180 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFK 140
            + E   S  ++  L+R D L+GL N       L             + ++++ D+D FK
Sbjct: 327 DVTERRQSEAKVLYLARHDSLTGLANRRELRERLEKILVNVRSGRATQTAVLYLDLDGFK 386

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND  GH  GD+V+  ++ +L           RLGG+EFA     ++      +A  + 
Sbjct: 387 LVNDRHGHSAGDEVLETVAARLRQTLRHGEMAARLGGDEFAVVVEDATLPSIVAIAQRVI 446

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + +      +++G S+ I  S GIA     EP+  ++ RAD+A+Y AKK+G+       D
Sbjct: 447 REVAK-PYPLAAGVSMSIGTSIGIALAQEHEPVDDLVRRADEAMYSAKKAGKGTYRISGD 505


>gi|258405556|ref|YP_003198298.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692]
 gi|257797783|gb|ACV68720.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692]
          Length = 387

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 91/175 (52%), Gaps = 15/175 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           E  +  NR+  L+R D L+ L N   F             Y   LS++  D+D+FK++ND
Sbjct: 207 ESTVQENRL--LARTDFLTDLPNRRGFFEAGAKEIRRAHRYGRPLSVLLLDLDHFKKVND 264

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGD V+A    +          + RLGGEEFA     +   EA+ +A  LR+ +E
Sbjct: 265 VYGHDVGDHVLAQFGQKCRGRLREHDLMARLGGEEFAVLLPETPVAEASQVAEGLRRFVE 324

Query: 205 NSQIN--ISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
            S +   + +G    +T+S G+ E   +E  +S ++ R D ALY+AK++GRN V 
Sbjct: 325 GSSLAGVLEAGE---VTVSIGVCELAPQEDSLSEVLKRVDTALYMAKQAGRNLVR 376


>gi|207724828|ref|YP_002255225.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
 gi|206590053|emb|CAQ37014.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
          Length = 914

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136
            +S + + +   +  R+  L+  D L+GL N S FI+ L S  E+       L++ F D+
Sbjct: 457 MLSFADITDFKRAEQRLRHLASHDALTGLTNRSFFIAHLDSAIERARDESRELALFFLDL 516

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAIL 195
           D FK +ND  GH  GD ++   + +L    G    + RLGG+EF        E    A L
Sbjct: 517 DRFKSVNDTAGHACGDTLLQSAAARLTDCIGPGDVIARLGGDEFVILIEQRVEGMRIAQL 576

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           A  L   +     +  +G   ++ +S G+A   H     + ++  AD A+Y AK++GRNR
Sbjct: 577 AERLLAAMRE-PFDTVNG-RYYLGVSIGVALYPHDGISGTDLLRSADAAMYRAKQNGRNR 634

Query: 255 VVCFS 259
              ++
Sbjct: 635 AQFYT 639


>gi|194432614|ref|ZP_03064900.1| MASE2 domain/diguanylate cyclase [Shigella dysenteriae 1012]
 gi|194419175|gb|EDX35258.1| MASE2 domain/diguanylate cyclase [Shigella dysenteriae 1012]
 gi|332085990|gb|EGI91154.1| diguanylate cyclase domain protein [Shigella dysenteriae 155-74]
          Length = 320

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 91  LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAE 150

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 151 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 210

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +   ++
Sbjct: 211 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL 270

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 271 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 318


>gi|152998862|ref|YP_001364543.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|151363480|gb|ABS06480.1| diguanylate cyclase [Shewanella baltica OS185]
          Length = 340

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 10/179 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL  +  ++  LS  D L+ + N   F   L          N  L+++  DID+FKQ ND
Sbjct: 161 ELAEANRQLEILSNTDGLTNIGNRRLFDMMLQTEWSRGQRSNSSLALIMLDIDHFKQFND 220

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           ++GH  GD  +  L+  L          V R GGEEF        +Q     A  + ++I
Sbjct: 221 HYGHLAGDDCLKQLASTLSQSGRRAGELVARYGGEEFVILLPNIDKQTVLDTAQHIHQLI 280

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +   I  ++     +T+SAG+A  +  +++    ++ +AD ALY AK +GRN +   ++
Sbjct: 281 QTIAIPHANTDLGIVTVSAGVAYLQPSNQQNALELVRQADAALYRAKSAGRNCIRVMNE 339


>gi|71908493|ref|YP_286080.1| GGDEF [Dechloromonas aromatica RCB]
 gi|71848114|gb|AAZ47610.1| GGDEF protein [Dechloromonas aromatica RCB]
          Length = 410

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 63/213 (29%), Positives = 99/213 (46%), Gaps = 13/213 (6%)

Query: 53  IGLTPFYGLEYI--LVENLSLVIISITISLL-LGYISGSILKELFISYNRISQLSRIDCL 109
           +  +P +G + I  +VE  S++   I   +  L         EL  +   I +LS ID L
Sbjct: 195 LARSPGHGRDEIDLVVEGFSVLQSGINSHIANLDEQVAQRTAELESALAAIHRLSTIDPL 254

Query: 110 SGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +G  N   F   +         Y   L+++F DID+FK+IND  GH +GD+V+   ++  
Sbjct: 255 TGCFNRRLFNERIQEELDRAIRYQRALAVIFCDIDHFKRINDTCGHLLGDQVLQEAAECF 314

Query: 163 VVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                    +V R GGEEF      +S   A   A  LR  +  S + +   P + +T S
Sbjct: 315 RRELRGHIDWVARYGGEEFVIVLPETSLPAAIATAERLRLALTESMVALL--PGLTVTAS 372

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            G+ +    E +  ++ RAD  LY AK +GRN+
Sbjct: 373 FGVTQHVPGETVQELLQRADNQLYAAKAAGRNQ 405


>gi|77359284|ref|YP_338859.1| hypothetical protein PSHAa0317 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874195|emb|CAI85416.1| putative orphan protein ; putative sensory-box domain
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 843

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 12/187 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQ 141
           + E   +  ++  L+  D L+GL N   F   L    +          ++++ D+D+FK 
Sbjct: 392 IHERKQAELQLRHLALHDTLTGLHNRYYFDQQLNRICQPQHTHSDIEHALIYIDLDHFKI 451

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD V+  ++   +    T   V R+GG+EFA     ++  +A ++A  +  
Sbjct: 452 INDSKGHQQGDIVLKEVAQLFITNISTEHLVFRVGGDEFAVILKHTNLLDAHLIAEGICN 511

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS- 259
            IE +Q   S      I+ S G+ +   K    S  + +AD ALY+AK  GRN V C++ 
Sbjct: 512 AIEQNQFK-SEEQIYSISCSIGLTQITEKNCDPSECLKQADIALYIAKNLGRNLVHCYAK 570

Query: 260 -DIENNT 265
            D  NNT
Sbjct: 571 QDAHNNT 577


>gi|37679342|ref|NP_933951.1| hypothetical protein VV1158 [Vibrio vulnificus YJ016]
 gi|320156916|ref|YP_004189295.1| two component response regulator [Vibrio vulnificus MO6-24/O]
 gi|37198085|dbj|BAC93922.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
 gi|319932228|gb|ADV87092.1| two component response regulator [Vibrio vulnificus MO6-24/O]
          Length = 304

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 3/177 (1%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           ++ + L     ++ +++  D L+GL+N        G  +   +++ FDID FK IND +G
Sbjct: 129 TLQRALIEQNEQLKRMATTDALTGLVNRRYLADMAGKVSGNFALILFDIDDFKTINDQYG 188

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD+V+  +++    V G   +  R GGEEF         + A  LA  ++     S+
Sbjct: 189 HHVGDEVLVRIAEITRRVIGQHGYCARWGGEEFLILLPNFDAKRAYDLAACIQDEFNESK 248

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             + +    H T S G+A          +I +AD A+Y  KKSG+NRVV  S +E+ 
Sbjct: 249 GALGA---YHFTASFGVACNQGALSFHHVIRQADAAMYQGKKSGKNRVVSSSAMESR 302


>gi|320194332|gb|EFW68963.1| hypothetical protein EcoM_03251 [Escherichia coli WV_060327]
          Length = 558

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LLL  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               +    S++  D+D+FK IND FGH VGD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQMHQHPFSVIQVDLDHFKAINDRFGHQVGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G++  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 536 LADRRLYLAKQAGRNRV-FASD 556


>gi|302388955|ref|YP_003824776.1| diguanylate cyclase [Thermosediminibacter oceani DSM 16646]
 gi|302199583|gb|ADL07153.1| diguanylate cyclase [Thermosediminibacter oceani DSM 16646]
          Length = 570

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 16/198 (8%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-- 128
           L I+SI  +     IS + L      +++ S+L+  D L+ L N       L     +  
Sbjct: 375 LKIMSILANQATVAISNARL------FDKTSKLAVTDSLTRLYNLRYIYEELERMVNRVK 428

Query: 129 -----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                 S++  DID+FK  ND +GH VGD ++  L++ L         VGR GGEEF   
Sbjct: 429 NNGGVFSLIIIDIDHFKSYNDRYGHLVGDSILKKLAEVLKDNVRDNDIVGRYGGEEFVII 488

Query: 184 ALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKE-PISTIIYRAD 241
              +   EA  +A  +R+++E+++     +G  I ITISAG+A        +  ++ +AD
Sbjct: 489 LPDTPGAEAYAIAERIREVVESTEFAQTDTGKKIFITISAGVASCPDDALTVKELVRKAD 548

Query: 242 QA-LYVAKKSGRNRVVCF 258
           QA L+ AK+ GRNRVV F
Sbjct: 549 QALLFGAKQKGRNRVVEF 566


>gi|254691338|ref|ZP_05154592.1| GAF/GGDEF domain protein [Brucella abortus bv. 6 str. 870]
 gi|254695364|ref|ZP_05157192.1| GAF/GGDEF domain protein [Brucella abortus bv. 3 str. Tulya]
 gi|254702648|ref|ZP_05164476.1| GAF/GGDEF domain protein [Brucella suis bv. 3 str. 686]
 gi|256059531|ref|ZP_05449731.1| GAF/GGDEF domain protein [Brucella neotomae 5K33]
 gi|256256523|ref|ZP_05462059.1| GAF/GGDEF domain protein [Brucella abortus bv. 9 str. C68]
 gi|256262789|ref|ZP_05465321.1| GAF/GGDEF domain-containing protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|263092597|gb|EEZ16832.1| GAF/GGDEF domain-containing protein [Brucella melitensis bv. 2 str.
           63/9]
          Length = 364

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS--- 130
           L++G I+     I  +   +  R++  +  D L+ L N       ++   S  + LS   
Sbjct: 170 LMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGKLLTQKKSARDGLSRDG 229

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSS 188
            ++  D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF      G+S
Sbjct: 230 FLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTS 289

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++  I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK
Sbjct: 290 KEQTDIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAK 348

Query: 249 KSGRNRVVCFSD 260
             G+NR   F +
Sbjct: 349 SKGKNRFEYFEE 360


>gi|145298274|ref|YP_001141115.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851046|gb|ABO89367.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 379

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 107/243 (44%), Gaps = 14/243 (5%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLF-YIGLTPFYGLEYILVENLSLVIISITISLLL 82
           P+  +  F+IF      ++     I +   +G     G     ++ L+ V +    ++  
Sbjct: 123 PYLLISLFAIFPIPLSLSLQLTGGIMVTTLVGNWLLVGQPLWSMQTLNQVWLLGLFAMTS 182

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFD 135
            ++    L  L   Y      S  D L+G++N    +  L          +   +++  D
Sbjct: 183 AWVQCGQLNMLLQLYRE----STTDELTGMMNRRLLMKQLDKARVTMDHKHSPFAVMLLD 238

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAI 194
           +D FK+IND FGH  GD V+  ++  L       M +GR GGEEFA       E  +A  
Sbjct: 239 LDRFKRINDTFGHLAGDAVLKEVAATLAEQLEPGMVLGRYGGEEFAILLPRCGELAQAKR 298

Query: 195 LANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +A  LR  +E   +   +    + +T+S G+      E +  ++ RAD+ LY+AK +GRN
Sbjct: 299 VAERLRVAVEARLVKSPTSDELLEVTVSIGLTLAQRGESVEDLLNRADECLYMAKMAGRN 358

Query: 254 RVV 256
            VV
Sbjct: 359 CVV 361


>gi|194336472|ref|YP_002018266.1| diguanylate cyclase [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308949|gb|ACF43649.1| diguanylate cyclase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 433

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 74/277 (26%), Positives = 117/277 (42%), Gaps = 35/277 (12%)

Query: 16  EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS--LVI 73
           +  +ES      ++  + FF +FI  V+   +I   ++ L   Y    I +  L+  L +
Sbjct: 144 KAKIESQDASVKLVVINEFFLLFILAVLLTVSITAGWM-LHNNYRQTLIPLSQLAGQLKL 202

Query: 74  ISITISLLLGYISGSILKELFIS-----------------------YNRISQLSRIDCLS 110
           ++  I   +   +  + KEL  +                         ++ +L   D  +
Sbjct: 203 LNRNIPESIRDTAEEMKKELTDAEYSSDITQVTRSIMSFCGDIDAKNKKLDELHIRDEKT 262

Query: 111 GLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            L N+  F   L          NEK+S+   DIDYFK+ ND  GH  GD+ +  L+D + 
Sbjct: 263 NLYNYRHFKEHLIVEVERSKRQNEKVSLAMIDIDYFKRYNDANGHLAGDRALKALADIIS 322

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISA 222
                     R GGEEFA     +  + A+ +A  LRKII           P+  +T+S 
Sbjct: 323 TQCRAYDVPSRFGGEEFAILFPKTDTETASEIAERLRKIISRESFRQQQQQPAGELTVSI 382

Query: 223 GIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           G+A           +I  AD+ALY AK +GRN+VV F
Sbjct: 383 GVATFPADAADWHNLINNADRALYKAKSNGRNKVVTF 419


>gi|294853252|ref|ZP_06793924.1| GAF/GGDEF domain-containing protein [Brucella sp. NVSL 07-0026]
 gi|294818907|gb|EFG35907.1| GAF/GGDEF domain-containing protein [Brucella sp. NVSL 07-0026]
          Length = 391

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS--- 130
           L++G I+     I  +   +  R++  +  D L+ L N       ++   S  + LS   
Sbjct: 197 LMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGKLLTQKKSARDGLSRDG 256

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSS 188
            ++  D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF      G+S
Sbjct: 257 FLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTS 316

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++  I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK
Sbjct: 317 KEQTDIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAK 375

Query: 249 KSGRNRVVCFSD 260
             G+NR   F +
Sbjct: 376 SKGKNRFEYFEE 387


>gi|237800927|ref|ZP_04589388.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023783|gb|EGI03840.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 523

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 88/201 (43%), Gaps = 20/201 (9%)

Query: 81  LLGYISGSILKE---------LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124
           LLG+I   I  E         L      +  ++  D L+GL N   F             
Sbjct: 301 LLGHIHSRIRVEDQLLGSQAALIRLNQHLELIASEDKLTGLANRRRFDQFLDLEFKRARR 360

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAA 183
               LS++  D D+FK+ ND++GH  GD+ +  L+  +      P     R GGEE A  
Sbjct: 361 ERSTLSLILIDADHFKRYNDHYGHLAGDECLVTLARMVEQCIRRPADVAARYGGEEIAVV 420

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRA 240
             G+ E  A  +A ++   I + QI  +  P   +T+S G+A     +       +I  A
Sbjct: 421 LPGTDESNARQVAENILHAIGDRQIEHADSPFGIVTVSLGVATFMGTDRRLDQRGLIELA 480

Query: 241 DQALYVAKKSGRNRVVCFSDI 261
           D+ALY AK  GRNRV   SDI
Sbjct: 481 DRALYAAKSQGRNRVNAASDI 501


>gi|167839921|ref|ZP_02466605.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Burkholderia thailandensis
           MSMB43]
          Length = 709

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 11/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
             + E   +  R+  ++  D L+GL N +     L     +       ++ +  D+D FK
Sbjct: 259 RDITERKQAEARVRYMALHDALTGLPNRALLQEHLAQAIARARREGGCVAALMLDLDRFK 318

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
            +ND+ GH +GD+++   S +L         V RLGG+EF         +Q A  +A  +
Sbjct: 319 HVNDSLGHHIGDRLLEAASMRLRGCLREGDTVARLGGDEFVIGLADVDGDQGAGEVATRV 378

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +  S+        +H+  S GI+      E + T++  AD A+Y AK +GR     F
Sbjct: 379 LTTL--SRPFFVENHELHVGCSIGISRYPADGEDVQTLLRAADTAMYDAKANGRGIYRFF 436

Query: 259 SDIEN 263
           +   N
Sbjct: 437 TPELN 441


>gi|194364834|ref|YP_002027444.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
 gi|194347638|gb|ACF50761.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
          Length = 580

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 5/172 (2%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNF 146
           +E     + + QL+  D L+GLLN  A    +   + +      ++  D+D FK IND  
Sbjct: 401 RERLALTSELRQLAGTDELTGLLNRRALEEVVQQRHAEGEASAVVILLDVDRFKAINDGH 460

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+V+  ++  L         + R GGEEF              LA  LR  ++  
Sbjct: 461 GHDAGDQVLEQVAQLLQRHLRRSDSIARYGGEEFLVLLADGDLAGGRRLAESLRLALQQL 520

Query: 207 QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            I I+ G  + +T S G+A+         T++  AD A+Y AK  GR+RV  
Sbjct: 521 DIVIAGGIELRVTASFGVAQGGTDALGWRTLLRAADAAMYQAKAQGRDRVRV 572


>gi|320181636|gb|EFW56551.1| Protein YaiC [Shigella boydii ATCC 9905]
          Length = 371

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NTPQVTLRISVGVAPLNSQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|262171390|ref|ZP_06039068.1| GGDEF domain protein [Vibrio mimicus MB-451]
 gi|261892466|gb|EEY38452.1| GGDEF domain protein [Vibrio mimicus MB-451]
          Length = 352

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 72/265 (27%), Positives = 117/265 (44%), Gaps = 30/265 (11%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           +W C       F P  F I+ S  F+   +++  I              G+ Y  ++N  
Sbjct: 98  VWSC-------FVPILFYIFTSARFAFLTSSLFLILQ-----------SGIVYWQLQNEP 139

Query: 71  LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSY 125
           L+  S+ + L   YI   ++  ++    R     +  L+  D L+   N  +  +S   +
Sbjct: 140 LISWSVLLHLSFAYIGIWVVSHVYDQNRRKIENSLLYLASRDPLTSAHNRLSLTTSFQHF 199

Query: 126 NE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            +      LS++  D+D+FK IND FGH  GDKV+   +  L  V G    + R+GGEEF
Sbjct: 200 EQFNDQTTLSLLVIDLDFFKSINDQFGHDTGDKVLIETTRLLAQVVGDNN-LYRIGGEEF 258

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                  S ++A  +   LR II            + +TIS G+ E    + ++ ++  A
Sbjct: 259 CVTLFDQSLEQAERVCERLRAIISQHIFAFGD-KRVQVTISIGVCEYQPGDQLNDLLKFA 317

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D  LY AKK+GRN+V  F   +  T
Sbjct: 318 DIELYRAKKAGRNQVRLFKHAQTQT 342


>gi|288940712|ref|YP_003442952.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
 gi|288896084|gb|ADC61920.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
          Length = 535

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 59/265 (22%), Positives = 106/265 (40%), Gaps = 16/265 (6%)

Query: 12  WLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPF----YGLEYILVE 67
            +      E F+P   +  F +     +A V  +  +      L P     +  E +   
Sbjct: 271 LVARIPTRELFAPIERLSDFMLTIGAILACVFLLVMVIGLRHQLRPLREAAHHAECMTRG 330

Query: 68  NLSLVIISITISLLLGYISG---SILKELFISYNRISQLSRIDCLSGLLNHSAF------ 118
            + L  + +     +G+++     +L++L  S   +  L+R D L+GL N          
Sbjct: 331 EIPLAPLPVARDDEVGHLTAAFNRVLEKLLESRAEMEYLARHDGLTGLPNRQLLATHVQH 390

Query: 119 -ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
             S    +   L+I++ D+D FK IND  GH  GD  +   + +L  V      + R+GG
Sbjct: 391 AQSRAQRHGYGLAILYLDLDGFKAINDRLGHGAGDAALCETAKRLSGVIRGEDTLARIGG 450

Query: 178 EEFAAAALGSSEQEAAILANDL-RKIIENSQINI-SSGPSIHITISAGIAERCHKEPIST 235
           +EF          EA  +A  + RK +   +  +        +  S G+     +  +  
Sbjct: 451 DEFVILLADLDPDEAREVAELVARKCLGVFERPVRVQDQDCRLGTSLGLVLDHGERTLDA 510

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++  AD A+Y AK++GR R     D
Sbjct: 511 LLTAADMAMYRAKEAGRGRFCWADD 535


>gi|194367449|ref|YP_002030059.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
 gi|194350253|gb|ACF53376.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
          Length = 524

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 85/184 (46%), Gaps = 11/184 (5%)

Query: 82  LGYISGSILKELFISYNR---ISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFD 135
           +  +  ++L       +R   +++ SR D L+GLLN      +L +        +I+  D
Sbjct: 341 VAQLKQAVLHSFNALQDRIGTLNRASRTDPLTGLLNRRGLQQALDALQVQGIPFAILALD 400

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID FK IND  GH VGD  I  ++DQ+         + R GGEEF     G   + A   
Sbjct: 401 IDRFKTINDAHGHDVGDAAIVHIADQMRRYSRDSDILCRAGGEEFLLLLPGIGTESARQA 460

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
              LR+ I +        P   IT+S G+A            +  AD+ALY+AK+ GRNR
Sbjct: 461 GERLRQHIADHPFE----PVGTITVSLGVAHFPSFHVDAEQALRLADKALYLAKEQGRNR 516

Query: 255 VVCF 258
           VV +
Sbjct: 517 VVVY 520


>gi|27365860|ref|NP_761388.1| diguanylate cyclase [Vibrio vulnificus CMCP6]
 gi|27362009|gb|AAO10915.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio
           vulnificus CMCP6]
          Length = 320

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 89/178 (50%), Gaps = 9/178 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQIN 143
             L  + + +S++SR D L+GL N + +  SL     ++       S+V FDID+FK++N
Sbjct: 144 THLKETNHHLSEISRRDGLTGLFNRAFWEQSLKEEFSRMQFLDTPSSLVIFDIDHFKKVN 203

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD+VI   +  L          GR GGEEF      +S  +A   +  LRK I
Sbjct: 204 DTYGHHAGDEVIRRTASLLKKTARNSDLCGRFGGEEFTVMLPHTSADQARYFSERLRKRI 263

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           E  +I      +I+ TIS G+ E   K    +  +  AD ALY +K+ GRN+     +
Sbjct: 264 EQ-EIVCVEKFAINYTISLGVCEFDAKFTSHTEWLKAADSALYHSKEGGRNQTTVHEE 320


>gi|71734809|ref|YP_274835.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71555362|gb|AAZ34573.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 711

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 103/241 (42%), Gaps = 15/241 (6%)

Query: 39  IATVIFIANIFLFYI--GLTPFYGLEYILVENLSLVIISITISLLLGYI---SGSILKEL 93
           +A   F    F   +  GL+       +LV +LS++ I++   +L  ++   +  +   L
Sbjct: 182 MAAATFADGSFCGALPDGLSSNGLDRIVLVASLSILGIALFSCILDSHLETRTAVLANSL 241

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNF 146
             +   ++ L+  D L+GL N       +    +K        +++F D+D FK +ND F
Sbjct: 242 TEANQELTHLALHDNLTGLPNRVLLTDRIEQAMKKVSESGGCFALMFMDLDGFKPVNDAF 301

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD ++  ++ +L         + R+GG+EF         Q+A  +A   R++ E  
Sbjct: 302 GHHTGDLLLRQVALRLRNNLHRHDTLARIGGDEFVLLVELHDPQDALAVAT--RQVNEIG 359

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                    + I++S GI     +      ++  AD A+Y  K +G+N    F    N+ 
Sbjct: 360 NPFTIGEHQLQISLSIGICMYPGNGNTQHELLINADAAMYHTKAAGKNGYSFFDASMNSN 419

Query: 266 C 266
            
Sbjct: 420 A 420


>gi|88858053|ref|ZP_01132695.1| hypothetical protein PTD2_11724 [Pseudoalteromonas tunicata D2]
 gi|88819670|gb|EAR29483.1| hypothetical protein PTD2_11724 [Pseudoalteromonas tunicata D2]
          Length = 745

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 93/187 (49%), Gaps = 8/187 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQ 141
           +  S + E   + + + +LS  D L+GL N + F ++L     +    +++ FD+D FK+
Sbjct: 294 VLYSDISERKKAESELQRLSNRDRLTGLPNRNLFFTNLKKLGAQKCHHALLVFDLDNFKK 353

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           IND+ GH +GD ++  L+++L+ +        RLGG+EFA   +G+    +    A +  
Sbjct: 354 INDSLGHQLGDMLLCRLANRLIKLTRQQDSFYRLGGDEFALVIVGTNDIHKITSTAKEFL 413

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I  +Q    +G  + IT S G+            ++  AD A+Y AK+ G NR + F+
Sbjct: 414 HEI--TQPFHMAGHELVITSSVGVVLFPEDGNTPEILLKNADTAMYHAKQQG-NRYLFFN 470

Query: 260 DIENNTC 266
           D  N   
Sbjct: 471 DTMNRQA 477


>gi|88810874|ref|ZP_01126131.1| sensory box protein [Nitrococcus mobilis Nb-231]
 gi|88792504|gb|EAR23614.1| sensory box protein [Nitrococcus mobilis Nb-231]
          Length = 881

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 24/225 (10%)

Query: 58  FYGLEYILVENLSLVIISITISL-------LLGYISG-SILKELFISYNRISQLSRIDCL 109
           + G  +    + +L+ + +T+S        +  Y++    + E      +I   +  D L
Sbjct: 391 WSGELWERRRDGTLIPVRLTMSTVRDGEGTITHYVAHWQDISERKTFEAQIQCQALYDPL 450

Query: 110 SGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GL N     S L     +        +++F D+D FKQIND  GH +GD ++A ++ +L
Sbjct: 451 TGLPNRRLANSRLEQELGRAQRLTGFGALLFLDLDRFKQINDAHGHAIGDALLASIAQRL 510

Query: 163 VVVFGTPMFVGRLGGEEFAAAA---LGSSEQEAA---ILANDLRKIIENSQINISSGPSI 216
             +      V RLGG+EF        G+ ++ AA    +   +   I   +        +
Sbjct: 511 QNLLRIEDMVARLGGDEFVVLLGSEPGTRDEAAARAHRVGEKILAAIR--EPIAIDAYEL 568

Query: 217 HITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            ++ S GIA         + ++ RAD A+Y AK+ GRN +  F++
Sbjct: 569 SVSASVGIALYPDVDMNAADLLQRADSAMYRAKEDGRNTIHFFAE 613


>gi|120597099|ref|YP_961673.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|146291521|ref|YP_001181945.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
 gi|120557192|gb|ABM23119.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|145563211|gb|ABP74146.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
          Length = 346

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           +EL  + +R+ +LS  D L+ + N   F   L          +  L+++  DID+FK  N
Sbjct: 160 RELAEANSRLEKLSNTDGLTNIGNRRLFDHILQMEWSRGQRSSAPLALIMLDIDHFKLFN 219

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D++GH  GD  +  L+  L          V R GGEEF      + +Q A   A  + ++
Sbjct: 220 DHYGHLAGDDCLKLLAKGLSQSGRRAGELVARYGGEEFVILLPNTDQQTALDTAQYIHQL 279

Query: 203 IENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I++  I         +T+S G+   E   +     ++ +AD ALY+AK +GRN +   S
Sbjct: 280 IQSLAIPHVKTDLGTVTVSLGVTCIEPSEQHSALELVRQADAALYLAKSAGRNCIRYMS 338


>gi|253995525|ref|YP_003047589.1| PAS/PAC sensor-containing diguanylate cyclase [Methylotenera
           mobilis JLW8]
 gi|253982204|gb|ACT47062.1| diguanylate cyclase with PAS/PAC sensor [Methylotenera mobilis
           JLW8]
          Length = 526

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 52/213 (24%), Positives = 101/213 (47%), Gaps = 13/213 (6%)

Query: 64  ILVENLSLVIISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  E L++  +     ++  Y+   I +        R+  ++  D L+ L N S     L
Sbjct: 307 IYPEWLTISAVKNAEGVVTNYVGTMIDITARKSIEERVHHMAHYDPLTDLPNRSLLTDRL 366

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGR 174
                     N  L+++F D+D FK +ND  GH +GD ++  ++ +L   F      V R
Sbjct: 367 HQALAQARRENAMLAVMFLDLDKFKIVNDTLGHDIGDALLKAVAIRLTNCFKRQTDTVSR 426

Query: 175 LGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           LGG+EF        +EQ+ A++A ++ + +  ++        I+I+ S GI+    +   
Sbjct: 427 LGGDEFVVLLAKIETEQDVAMVAQEVIQSL--TETFYIEEHVINISCSIGISLHPKNGND 484

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           +++++  AD A+Y +K +GR     +++I N +
Sbjct: 485 VASLLRSADNAMYESKHAGRGCFRFYNNIANQS 517


>gi|218780099|ref|YP_002431417.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01]
 gi|218761483|gb|ACL03949.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01]
          Length = 249

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 12/179 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQIND 144
           E    ++R+  L+  D L+GL N           IS        L     D+D+FK +ND
Sbjct: 70  ENLSLFHRMRMLAAYDELTGLYNRRVGKMRLSEEISRSERRGSPLCAAMLDLDHFKAVND 129

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+  +             + R GGEE  A   G+  ++A  +   LR  + 
Sbjct: 130 TYGHQAGDRVLRHVCRIFRECLRAEDILIRYGGEEILAVMPGTELEDACDILERLRASVA 189

Query: 205 NSQINISSGPSIHITISAGIAER----CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  +N   G  I +T+SAG A             +++  AD+ LY+AK+ GRN+VVCF 
Sbjct: 190 DEPLNHK-GRCIPVTVSAGAARLHEAGDGPNDAGSLVALADRRLYMAKQKGRNQVVCFD 247


>gi|90023579|ref|YP_529406.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89953179|gb|ABD83194.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 588

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 63/180 (35%), Positives = 93/180 (51%), Gaps = 11/180 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           +EL ++  ++ +LS  D L+GL N       L         Y  ++SI+  DID FK IN
Sbjct: 406 EELELANEKLRELSDTDQLTGLKNRRFLNHYLEDEFARSCRYGHRMSILLVDIDKFKHIN 465

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DN+GH VGD  I  ++  L+     P   V R GGEEF      +  + A  +AN L  +
Sbjct: 466 DNYGHTVGDTCIQAIAKVLLESNRQPSDLVARYGGEEFCIVLPETDVEGALHVANRLLDM 525

Query: 203 IENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + N+ I  ++  +I++T S G   A     + I   I  AD ALY AKK+GR++VV + D
Sbjct: 526 VRNTPIYAAAN-TINVTCSIGCYTAVPNSTKQIIAFIDNADTALYEAKKTGRDKVVVYKD 584


>gi|83592371|ref|YP_426123.1| diguanylate cyclase/phosphodiesterase [Rhodospirillum rubrum ATCC
           11170]
 gi|83575285|gb|ABC21836.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Rhodospirillum rubrum
           ATCC 11170]
          Length = 917

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 15/199 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           +++  L+G I    + E+    +R   L+  D L+ L N       +G          + 
Sbjct: 450 LSVRRLVGAI--KDVTEIKEDLDRTEFLAYHDSLTNLPNRLLLADRMGQALALAVRRQDL 507

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-S 187
           L++ + D+D FK IND +GH VGD ++  ++ +L         V RLGG+EF     G  
Sbjct: 508 LAVCYLDLDSFKPINDTWGHSVGDALLIEVARRLQQNARAEDTVARLGGDEFVVLLCGFK 567

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALY 245
           +E E   +   +   I         G  + +T+S GI        +    +I  ADQA+Y
Sbjct: 568 AEAEVERVVRRMMDSIAT--PYSVGGRQVTLTVSMGITTFPRDAEQEADALIRHADQAMY 625

Query: 246 VAKKSGRNRVVCFSDIENN 264
            AK+ GRNR+  F D E +
Sbjct: 626 EAKRQGRNRIHYF-DAEKD 643


>gi|108803341|ref|YP_643278.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rubrobacter xylanophilus DSM 9941]
 gi|108764584|gb|ABG03466.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rubrobacter xylanophilus DSM 9941]
          Length = 754

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 84/176 (47%), Gaps = 9/176 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYF 139
           S + +     +  ++   +  D L+GL N + F+  LG         ++++++F D+D F
Sbjct: 308 SQTDITRRKQAEEKLLHEASHDALTGLPNRAFFMERLGEALRRPGDGDRVAVLFIDLDRF 367

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND+ GH +GD+++   +++L         + RLGG+EF     G S +EAA +A+ L
Sbjct: 368 KMINDSLGHAMGDRLLVAAAERLKGCLRPQDTLARLGGDEFTVLLEGVSSEEAASVADRL 427

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
            + +   +     G  +    S G+      +     ++  AD A+Y AK  G  R
Sbjct: 428 LERLR--EPFRLDGYELFTAASVGVVLGGRERAGPEELLRDADIAMYRAKALGGGR 481


>gi|299132163|ref|ZP_07025358.1| diguanylate cyclase [Afipia sp. 1NLS2]
 gi|298592300|gb|EFI52500.1| diguanylate cyclase [Afipia sp. 1NLS2]
          Length = 492

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 90/201 (44%), Gaps = 18/201 (8%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE- 127
           L L I +I ++L L       +     +  R+SQL+  D L+G+ N   F   +      
Sbjct: 294 LILSIFTIGVTLFL----TREISRRAAAEKRLSQLATTDALTGIDNRRRFDERILDEWRR 349

Query: 128 -----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFA 181
                 LS++  D D+FK  ND FGH  GD+++A ++  +            R GGEEFA
Sbjct: 350 GWQKLPLSLLMIDADHFKAFNDLFGHQAGDQLLARIASCIVESAKRPSDCAARYGGEEFA 409

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYR 239
                +    A  LA ++R  + +   +  +      T+S GIA            +I  
Sbjct: 410 LLLPNTDLAGALKLAEEVRDRVAHLSADKWAT-----TVSIGIACLIPDMAGSPKALIAA 464

Query: 240 ADQALYVAKKSGRNRVVCFSD 260
           AD+ALY AK+ GRNR V  ++
Sbjct: 465 ADKALYQAKEQGRNRCVAINE 485


>gi|284988703|ref|YP_003407257.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Geodermatophilus obscurus DSM
           43160]
 gi|284061948|gb|ADB72886.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Geodermatophilus obscurus DSM 43160]
          Length = 898

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 80/179 (44%), Gaps = 9/179 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQINDNF 146
           E  ++  R++  +  D L+GL N    +  L           +++ F D+D+FK IND+ 
Sbjct: 440 ERELAQGRLTHHALHDPLTGLPNRVLLLDRLEVALAQRSRGGVAVAFVDLDHFKLINDSL 499

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN 205
           GH  GD VI   + +L  V      V R GG+EF   A     E++   LA  L   +  
Sbjct: 500 GHAAGDTVITAAATRLRAVVRPGDTVARFGGDEFVVLAESVVDERDVEGLAERLAGALA- 558

Query: 206 SQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            +    +G  + +T S GIA           ++  AD A+Y AK++GR R   F  +  
Sbjct: 559 -EPFDLAGDEVFVTASIGIAVSSGTGGDAHGLLRDADAAMYRAKEAGRARHEVFDSVMR 616


>gi|224824691|ref|ZP_03697798.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
 gi|224603184|gb|EEG09360.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
          Length = 1086

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 12/208 (5%)

Query: 69  LSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------S 120
           LS+  +      +  Y+   + +     +  R+  L+  D L+ L N S  I        
Sbjct: 611 LSISAVRDDAGAITNYVGVFADITVRKQAEERLQFLANHDPLTRLPNRSWLIACLEDRIQ 670

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            + S  ++++++F D+D FK IND+FGH  GD+++   + +L  V G    + RLGG+EF
Sbjct: 671 QIASSGQQVAVMFLDLDRFKLINDSFGHQTGDELLRETASRLEQVVGGRGQIARLGGDEF 730

Query: 181 AAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIY 238
                  +S+   + LA D+  ++   Q     G  + +T S GI+   H      T++ 
Sbjct: 731 TLLVSHFASQATLSTLAEDILAVLA--QPLWLEGQELIVTGSLGISVYPHDGSDARTLLK 788

Query: 239 RADQALYVAKKSGRNRVVCFSDIENNTC 266
            AD A+Y AK++G+N    F+   N   
Sbjct: 789 NADVAMYRAKEAGKNTYQFFAAEMNAQA 816


>gi|251794481|ref|YP_003009212.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Paenibacillus sp. JDR-2]
 gi|247542107|gb|ACS99125.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Paenibacillus sp. JDR-2]
          Length = 683

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 70/282 (24%), Positives = 125/282 (44%), Gaps = 23/282 (8%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYF-----SIFFSIFIATVIFIANIFLFYIGL 55
           M+      + +       L S +   F I F     +++     A+++ +A   + Y G+
Sbjct: 136 MSIQYNPIIVVLSAVIAILASCAALYFFINFRDGSKAVWSKWAAASLMGLAVCGMHYTGM 195

Query: 56  --TPFYGLEYI---LVENLSL---VIISITISLLLGYISGSILKELFISYNRISQLSRID 107
               F+  E I   L EN+ +   ++IS+T+  LL  +   I   +++    + +++  D
Sbjct: 196 GAASFWCGEPIASSLTENIPINLFLLISVTLVTLLIMLVTWIA--IYLDRTVLERMAYSD 253

Query: 108 CLSGLLNH----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            L+GL N       F   L        ++F D+D FK IND  GH +GD ++  ++ +L 
Sbjct: 254 PLTGLANRHAMNRYFDQKLDKA-RSYGLLFLDLDQFKIINDTLGHDIGDLLVQAVAKRLR 312

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                     RLGG+EF     G    E   LAN + + I   +  +  G  ++IT S G
Sbjct: 313 SHVSEGAQTFRLGGDEFLLVTRGMEPSEVEKLANRILEDIR--KPYLLEGNELYITGSIG 370

Query: 224 IA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           I+    H    S+++  AD A+Y AK+ G+N+   + +    
Sbjct: 371 ISLSPQHGIERSSLLIAADTAMYQAKRRGKNQYCLYDEQMER 412


>gi|167587868|ref|ZP_02380256.1| diguanylate cyclase (GGDEF domain) [Burkholderia ubonensis Bu]
          Length = 288

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 13/230 (5%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96
           + IA +  + +  L  +  T  + + + +    S+    + + +L   ++  + + LF +
Sbjct: 60  LAIAVLACLTDTTLNLLS-TNRFTVGWYVARVFSMFTPGVLVCVLAWEVT-MLYQRLFEA 117

Query: 97  YNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +  + + S  D L+G+ N S F               E LS++  D+D+FK  ND FGH 
Sbjct: 118 HATLMRSSARDGLTGVYNRSHFNDHFHLLFLQARRQGEPLSLLMVDVDHFKAYNDTFGHV 177

Query: 150 VGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            GD  +  +++ L  V   P   V R GGEEFA     +  + A ++A + R+ +    +
Sbjct: 178 KGDACLIAVANALTGVVRRPADLVARYGGEEFAIVLPNTGARGARLVAEEAREAVLRLNL 237

Query: 209 NISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVV 256
               GP+  +++S G A     E      +I  AD ALY AK +GRNR++
Sbjct: 238 PTR-GPAGRVSVSVGCATASPDELSVPDALIEAADAALYRAKDAGRNRIM 286


>gi|226225788|ref|YP_002759894.1| putative signaling protein [Gemmatimonas aurantiaca T-27]
 gi|226088979|dbj|BAH37424.1| putative signaling protein [Gemmatimonas aurantiaca T-27]
          Length = 966

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 91/190 (47%), Gaps = 10/190 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDID 137
           ++   + E  +   +    +  D L+ L N S F+       +     +  ++++F D+D
Sbjct: 503 LNSRDVTEQSMIKQQYIHQAFHDPLTDLANRSLFLYQVGHALARGARQHSPVTVLFLDLD 562

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILA 196
            FK +ND+ GH  GD+++   + +L     +   + RLGG+EFA     + S +E  ++A
Sbjct: 563 NFKTVNDSLGHAAGDRLLVDAARRLASCVRSSDLIARLGGDEFAVLVEDAQSVEEVLVVA 622

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +   +  S+  + SG  + ++ S GIA     E    ++  AD A+YVAK  G+ + V
Sbjct: 623 SRIGTAL--SRPFMLSGKEVFVSASVGIARSSRGESSDELVRNADVAMYVAKTRGKGQHV 680

Query: 257 CFSDIENNTC 266
            F    ++  
Sbjct: 681 LFEQEMHDAA 690


>gi|218885318|ref|YP_002434639.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756272|gb|ACL07171.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 1076

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 12/183 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQINDN 145
             S  R+   +  D L+GL N   F   L           N   ++++ D+D FK IND+
Sbjct: 624 HESRERLEHQAFHDPLTGLPNRVLFHDRLQMALKRAARRRNYTFAMLYLDLDRFKVINDS 683

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIE 204
            GH VGD ++  +S +L         V R GG+EF      +  +  A  +A  +R  + 
Sbjct: 684 LGHDVGDALLKVVSAKLRECVRDVDTVARFGGDEFGVLLEETPTRGTAVRVARRIRAHLA 743

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             +        +  T S GI  R  +      ++  AD A+Y AK+ G++R   F+    
Sbjct: 744 --EPVRIGPHEVFTTASIGIVLRTDQYSTPEELVRDADTAMYRAKEQGQSRFKVFNKRMR 801

Query: 264 NTC 266
              
Sbjct: 802 EEA 804


>gi|160900682|ref|YP_001566264.1| response regulator receiver modulated diguanylate cyclase [Delftia
           acidovorans SPH-1]
 gi|160366266|gb|ABX37879.1| response regulator receiver modulated diguanylate cyclase [Delftia
           acidovorans SPH-1]
          Length = 360

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 90/189 (47%), Gaps = 12/189 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           S+  EL  +  +++++  +D L+GL+N   F       I+S     + L+++  D+D+FK
Sbjct: 167 SLSAELHEANQKLNEMVELDQLTGLVNRRGFDRILHAEIASARREGQPLTLMLCDLDHFK 226

Query: 141 QINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           + ND +GH  GD+ +  +   L            R GGEEFA     +    A   A  +
Sbjct: 227 RYNDTYGHVHGDECLKQIGRLLREVCVRPRDVAARYGGEEFALILPRTPRSGAMTFARAV 286

Query: 200 RKIIENSQINISSGP-SIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256
            +++   +I     P    +T+S GI      E      ++ RADQALY AK  GR+R  
Sbjct: 287 GQMLRVLRIRHPDSPHESGLTLSGGITTCIPDEYTSAEAMLMRADQALYAAKAQGRDRFF 346

Query: 257 CFSDIENNT 265
            F +++ +T
Sbjct: 347 SF-EMQMDT 354


>gi|313673627|ref|YP_004051738.1| diguanylate cyclase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940383|gb|ADR19575.1| diguanylate cyclase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 403

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 8/160 (5%)

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S  D L+GL N           I  L  Y  K S++F DID FK+IND +GH VGD V+ 
Sbjct: 243 SVTDPLTGLFNRKFMMKKIEEEIERLKRYGSKFSVIFLDIDNFKRINDVYGHIVGDFVLK 302

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
           +L++ +        +  R GGEE       ++ + A   +  L +I+ N+     +   +
Sbjct: 303 YLANIIKSELRKVDYAFRYGGEEMVILLSETNLENALKFSERLLEIVRNTIFKYKT-EDL 361

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            IT+S G+AE    E I  +I RAD A+  AK++G++RVV
Sbjct: 362 KITVSIGVAEFKPGETIEQLIERADMAMLKAKQAGKDRVV 401


>gi|306845550|ref|ZP_07478119.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1]
 gi|306273871|gb|EFM55698.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1]
          Length = 386

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 90/188 (47%), Gaps = 9/188 (4%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVF 133
           L++G I+     I  +   +  R++  +  D L+ L N       ++   S  +   ++ 
Sbjct: 197 LMIGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGKLLTQKKSARDSF-LLL 255

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEA 192
            D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF      G+S+++ 
Sbjct: 256 IDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTSKEQT 315

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK  G+
Sbjct: 316 DIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAKSKGK 374

Query: 253 NRVVCFSD 260
           NR   F +
Sbjct: 375 NRFEYFEE 382


>gi|260222170|emb|CBA31467.1| Uncharacterized signaling protein CC_0091 [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 1053

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 91/200 (45%), Gaps = 11/200 (5%)

Query: 75  SITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------N 126
           S T   ++ YI  SI + +      RI  L++ D L+ L N +     LG          
Sbjct: 583 SATSGEVVNYIGISIDITDRKAKEERIRFLAQHDVLTELPNRALCQQRLGEAIASARHTG 642

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           EK++++F D+D FK IND  GH +GD ++  ++ +L     +   V RLGG+EF      
Sbjct: 643 EKVAVLFIDLDRFKLINDTLGHHIGDGLLRTVARRLSSAVRSDDTVSRLGGDEFVIILRH 702

Query: 187 -SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQAL 244
            +   E   + ND R I    Q     G  + ++ S G+A           ++ RAD A+
Sbjct: 703 VTDLPELTAMVND-RLIPTIRQTATVDGHVLTVSCSVGVALYPEDATDQDELMRRADAAM 761

Query: 245 YVAKKSGRNRVVCFSDIENN 264
           Y AK +GR+    FS   + 
Sbjct: 762 YEAKSAGRDTARFFSPETDQ 781


>gi|254785900|ref|YP_003073329.1| response regulator receiver domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237683439|gb|ACR10703.1| response regulator receiver domain protein [Teredinibacter turnerae
           T7901]
          Length = 307

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 56/188 (29%), Positives = 98/188 (52%), Gaps = 10/188 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKL 129
            + +LLG +   +   L   Y      S  D ++G+ N +A+ ++          +  +L
Sbjct: 122 ALEMLLGVLYYPLRNALL--YQAALHSSLRDPVTGIGNRAAWDAAYQREVKLATRHGTEL 179

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  DID+FKQ+NDN+GH  GDK++  L+  L         V R GGEEF      ++ 
Sbjct: 180 SLLVIDIDHFKQVNDNYGHQQGDKLLKHLAKTLQDSLRETDQVFRYGGEEFVVILNNTNA 239

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           ++AA+ A  +R  +  S   + +   +  ++S G+A  C  +  +++  RAD A+Y AK+
Sbjct: 240 KDAALTAERIRLQVAMSP-ALINDQEVFASVSIGVAHLCADDDPTSLFNRADCAMYAAKR 298

Query: 250 SGRNRVVC 257
           +GRN+V C
Sbjct: 299 AGRNKVSC 306


>gi|224827145|ref|ZP_03700241.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Lutiella nitroferrum 2002]
 gi|224600654|gb|EEG06841.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Lutiella nitroferrum 2002]
          Length = 2093

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 84/180 (46%), Gaps = 11/180 (6%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
              + E      ++   +  D L+ L N +  +  L         + E+ ++ F D+D FK
Sbjct: 1638 QDISERKRLEAQLQHQATHDALTCLPNRNVLLDRLAQAIAHAKCHGEQCAVCFIDLDRFK 1697

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
             IND+FGH VGD+++  ++ ++         + R+GG+EF     G    +  A + N +
Sbjct: 1698 WINDSFGHDVGDELLKIVAQRMSASLRESDMIARIGGDEFVLLLRGFGDAESVAHIVNRV 1757

Query: 200  RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
               +  ++  + +G  + +T S G +      +  + ++  AD A++ AK+ GRN V  +
Sbjct: 1758 ADCL--TEPLLLAGRYLTVTCSMGYSIYPADGQTAAELLRFADMAMFHAKERGRNNVQAY 1815


>gi|77918781|ref|YP_356596.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77544864|gb|ABA88426.1| response regulator receiver modulated diguanylate cyclase
           [Pelobacter carbinolicus DSM 2380]
          Length = 470

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 106/234 (45%), Gaps = 18/234 (7%)

Query: 36  SIFIATVIFIANIF--LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
           SIF+  ++   N+    F    +P        +  L  +I SI+ + L      +++ E 
Sbjct: 238 SIFVVPIVKKQNVIGTFFLRTASPLKDGITDRIFKLCQIIASISGNAL----ENAMIFES 293

Query: 94  FISYNRI-SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
             +  ++  +LS  D L+ L NH  +        S    Y+  LS +FFDID FK+IND 
Sbjct: 294 METNKKLLEELSVRDSLTQLYNHQYYHTRFEEEFSRAQRYDLPLSCIFFDIDDFKKINDR 353

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD V+  ++  +  +        R GGEEFA     +    A   A  L  +I  
Sbjct: 354 YGHLTGDMVLRQIARLIKKLLRKSDISARYGGEEFAICLPNTGTDSANQFAERLLVLIRE 413

Query: 206 SQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
             I    G   H+T+S G +   +        +I  AD+A+Y AK+SG+NR+ C
Sbjct: 414 LSIQQLKGE--HVTVSMGTSTYMNNNVASYRELIQLADKAMYQAKESGKNRICC 465


>gi|78486363|ref|YP_392288.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
 gi|78364649|gb|ABB42614.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
          Length = 665

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 64/274 (23%), Positives = 123/274 (44%), Gaps = 24/274 (8%)

Query: 3   RSLKDFLSIWL-CHEKNLESF---SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPF 58
           +    +L+++L   +  ++ +   S H F ++F +   + +  + F+   ++     +P 
Sbjct: 135 QDKPSYLNLYLYVDQTYIQKYFAESQHNFFLFFGLVPFLMLMLLWFVLRKYVT----SPL 190

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNH 115
             L        ++   S      L YI  S+++    L    N + + +R D LSGL N 
Sbjct: 191 EFLRQYAYYQSNVP--SKFKLRELEYIRSSMVQTFDRLDNEKNELYRQARTDNLSGLANR 248

Query: 116 SAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
           +     +           ++ +++F D+D FK +ND  GH VGD ++  +S  +  V   
Sbjct: 249 NHLNERINWLISEYSRTGQEFAVLFMDLDNFKTVNDMLGHEVGDNLLKNVSTIIQEVLRD 308

Query: 169 PMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
              + R+GG+EF        S  E   + N +   I  S++++     + ++ S GI   
Sbjct: 309 YDIIARVGGDEFVIVLNYYQSNFELTHVINRILDRI--SEVHMVDSHPVKVSASIGIVCF 366

Query: 228 C-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
               + IST++  AD A+Y AK SG+NR   F++
Sbjct: 367 PKDGDNISTLMKNADIAMYEAKNSGKNRFKFFTE 400


>gi|78222915|ref|YP_384662.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter metallireducens GS-15]
 gi|78194170|gb|ABB31937.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter metallireducens GS-15]
          Length = 324

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 62/271 (22%), Positives = 109/271 (40%), Gaps = 16/271 (5%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI 64
           + D     LC       F  +T++I  +      +  +   A+ F+      PF   E  
Sbjct: 54  MPDLEGPALCRRIRGAGFPEYTYIIMLTARRDDVVVGMEAGADDFIG----KPFNKEELK 109

Query: 65  LVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           +    +  I+++   L L  +      + L  S  ++ Q++  D L+GL N   F   L 
Sbjct: 110 VRIKAAERIVTLERELALTNLGLQEKNRRLEESEEQLRQMAHFDKLTGLPNRLLFFERLE 169

Query: 124 SY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                         ++F D+D FK +NDN GH  GD+++     ++         V R+G
Sbjct: 170 RAVVESKRSESNFGLLFVDLDAFKAVNDNHGHKTGDELLVMAGQRMDGCVRASDTVARMG 229

Query: 177 GEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPIS 234
           G+EF     G  S      +A  +   +  S+    SG +  I  S GI+   H  + + 
Sbjct: 230 GDEFCIIVRGVKSFDGPVTVAEKIISAL--SRPFDISGITCRIGASVGISVYPHDGDSVE 287

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            ++  AD A+Y AK+ G+N    +     +T
Sbjct: 288 LLMTHADNAMYEAKRGGKNSWRRWKPDSPDT 318


>gi|254489862|ref|ZP_05103057.1| GGDEF domain protein [Methylophaga thiooxidans DMS010]
 gi|224464947|gb|EEF81201.1| GGDEF domain protein [Methylophaga thiooxydans DMS010]
          Length = 317

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 101/185 (54%), Gaps = 10/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSA----F---ISSLGSYNEKLSIVFFDIDYFKQ 141
           I ++L  +   + +L+  D L+G+LN  A    F   +       + +SI   DID+FK+
Sbjct: 124 IQEKLRQTNLVLEKLAYYDELTGVLNRRAGNASFQVEMDRAIRKEQNVSIAMVDIDHFKK 183

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH  GD+V+   S  L         V R GGEEF   A  +++ EA+ L   +R+
Sbjct: 184 INDAFGHQTGDEVLRVFSRVLRQTMRPYDIVCRYGGEEFMLIAEINNKDEASDLFERVRE 243

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFS 259
            +  +QI  ++  +I+IT S G+     +    + +++ +AD+ALY AK +GRN+V+  +
Sbjct: 244 TVSTTQIRHAN-QTINITASFGVHVVIPRTDMILKSLVQKADEALYEAKSAGRNKVIISA 302

Query: 260 DIENN 264
           D++ +
Sbjct: 303 DLDES 307


>gi|126659446|ref|ZP_01730580.1| hypothetical protein CY0110_20780 [Cyanothece sp. CCY0110]
 gi|126619282|gb|EAZ90017.1| hypothetical protein CY0110_20780 [Cyanothece sp. CCY0110]
          Length = 721

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 13/193 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           L+  YI    + +   +  ++   +  D L+GL N + F   +         YN+ L+I+
Sbjct: 265 LIRSYIF--DITQRKQAEMQLKYHAFHDSLTGLANRAFFDQHISLTIKNCERYNKLLAIL 322

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQE 191
           F DID FK IND  GH +GD+++   + +L         V R GG+EF           +
Sbjct: 323 FIDIDNFKNINDTLGHGIGDRILNCFAQRLTSQVRKSDLVCRWGGDEFVVILSEIQDPDQ 382

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
           +A  A  L K  E   + I     I++  S GIA      +    ++  AD AL   K+S
Sbjct: 383 SAKFAKRLLKTFE-HPLTIERNQ-IYLKCSIGIACYPEDGKNAEILLKNADAALSRTKES 440

Query: 251 GRNRVVCFSDIEN 263
           GRN    ++   +
Sbjct: 441 GRNHYQFYNPEMS 453


>gi|121535343|ref|ZP_01667155.1| diguanylate cyclase with PAS/PAC sensor [Thermosinus
           carboxydivorans Nor1]
 gi|121306035|gb|EAX46965.1| diguanylate cyclase with PAS/PAC sensor [Thermosinus
           carboxydivorans Nor1]
          Length = 653

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 8/167 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ + +  D L+GL N       L             + ++  DID+FK++ND++GH  
Sbjct: 476 EKLYEQAIRDPLTGLYNRRYMEEVLAMELAQTERTGGTIGVIMLDIDFFKRVNDSYGHEA 535

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  L   +           R GGEEFA     +  +     A  LR+      I  
Sbjct: 536 GDVVLKRLGRFIAESVRKGDIACRFGGEEFAVILPNTLAEAVCRRAEQLRQGFAGLAIIY 595

Query: 211 SSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256
                  +++SAG+A           ++  AD  LY AK++GRNRVV
Sbjct: 596 REKIVGPLSLSAGVAVYPGDATSGEDLVRLADSRLYQAKQAGRNRVV 642


>gi|15802390|ref|NP_288416.1| hypothetical protein Z3047 [Escherichia coli O157:H7 EDL933]
 gi|12516062|gb|AAG56970.1|AE005417_12 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
          Length = 564

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  B L+ L N  A          
Sbjct: 362 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHBTLTRLYNRGALFEKARPLAK 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLIXSSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 542 LADRRLYLAKQAGRNRV-FASD 562


>gi|293409736|ref|ZP_06653312.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470204|gb|EFF12688.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 410

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 238 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 296

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 297 HINDLYGHSKGDEVLCTLARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 356

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 357 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 407


>gi|254731905|ref|ZP_05190483.1| GAF/GGDEF domain protein [Brucella abortus bv. 4 str. 292]
          Length = 300

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS--- 130
           L++G I+     I  +   +  R++  +  D L+ L N       ++   S  + LS   
Sbjct: 106 LMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGKLLTQKKSARDGLSRDG 165

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSS 188
            ++  D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF      G+S
Sbjct: 166 FLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTS 225

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++  I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK
Sbjct: 226 KEQTDIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAK 284

Query: 249 KSGRNRVVCFSD 260
             G+NR   F +
Sbjct: 285 SKGKNRFEYFEE 296


>gi|170691421|ref|ZP_02882586.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia graminis C4D1M]
 gi|170143626|gb|EDT11789.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia graminis C4D1M]
          Length = 1036

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 86/187 (45%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + +L     ++   +  D L+ L N +     L          ++ +++VF D+D FK 
Sbjct: 588 DVTDLMRYQEQLEYQANYDSLTRLPNRNLLRDRLQHALIVAQRQHKGVAVVFMDLDGFKN 647

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDLR 200
           +ND+ GH VGD+++  ++++L     T   V R GG+EF      + ++++ I     +R
Sbjct: 648 VNDSLGHSVGDRLLGVVAERLARCTRTSNTVARHGGDEFVVVMTDTVDEQSLIAWMERVR 707

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I  S+     G  +++  S G +      +   T++ +AD A+Y AK  GRN    + 
Sbjct: 708 ASI--SEPVWLDGTELYVGCSLGASLFPQDGDDAETLMKKADLAMYRAKDMGRNTFQFYQ 765

Query: 260 DIENNTC 266
              N + 
Sbjct: 766 PEMNASA 772


>gi|126660962|ref|ZP_01732050.1| hypothetical protein CY0110_06504 [Cyanothece sp. CCY0110]
 gi|126617740|gb|EAZ88521.1| hypothetical protein CY0110_06504 [Cyanothece sp. CCY0110]
          Length = 721

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 12/188 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDI 136
           I+   + E   +  ++   +  D L+GL N SA +  L            +  +I+F D+
Sbjct: 270 INCHDITERHYTAQQLRYDAYHDKLTGLANRSALLEQLQKAIDRNKRRRQDHFAILFLDL 329

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAIL 195
           D FK IND+ GH +GD+++  ++ +L         + R GG+EF        E +EA I+
Sbjct: 330 DRFKVINDSLGHLMGDELLKNMAQRLEQCHRDGDTLARFGGDEFVFLLQDIREPEEAVIV 389

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  + ++++       +   + I+ S GI     H +    ++  AD A+Y AK +G+  
Sbjct: 390 AQRIHEVLKA--PFTLNNREVFISASIGITISTDHYDHPEQMLRDADAAMYRAKANGKAC 447

Query: 255 VVCFSDIE 262
              F+   
Sbjct: 448 HEIFAPTM 455


>gi|116252403|ref|YP_768241.1| GGDEF domain/EAL domain-containing protein [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115257051|emb|CAK08145.1| putative GGDEF/GAF domain sensory box protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 417

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 62/189 (32%), Positives = 90/189 (47%), Gaps = 12/189 (6%)

Query: 89  ILKELF-ISYNRISQL--SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           IL+EL   + +RI  +  + ID L+  +   AF             +   LS + FDID+
Sbjct: 154 ILEELAGAAMDRIELMQSAAIDSLTEAMTRRAFKQEAEQLISLALRHKHDLSCIVFDIDH 213

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++ND  GH  GD+V+  ++             GRLGGEEFA        + AA +A  
Sbjct: 214 FKKVNDTHGHAAGDEVLKAVASTCKTTLRAGDLFGRLGGEEFAVILPHVDREGAAAVAEK 273

Query: 199 LRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           LR  I +  I    G  + +T S G  A     + I T++ +AD A+Y AK  GRNR V 
Sbjct: 274 LRAAIASQIIRGDHG-DLTVTASFGTSALSIVSKEIETLLAQADAAMYQAKHGGRNRCVS 332

Query: 258 FSDIENNTC 266
           +S I  +  
Sbjct: 333 WSSIHADHA 341


>gi|120554062|ref|YP_958413.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Marinobacter aquaeolei VT8]
 gi|120323911|gb|ABM18226.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter aquaeolei VT8]
          Length = 819

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 81/190 (42%), Gaps = 11/190 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
            I G  +        ++ + +  D L+GL N    +  L            K+ ++F D+
Sbjct: 368 LILGEDISIRKRYEQQLLRQANYDILTGLPNRMLALDRLKLALAQARRDESKVGVMFLDL 427

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AIL 195
           D FK IND  GH  GD ++   + ++         V RLGG+EF     G +  +A + +
Sbjct: 428 DNFKHINDTLGHDAGDTLLIEAARRISSCLRGTSTVARLGGDEFLVVLPGLNGPDASSQV 487

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNR 254
           A  + K        + SG  + +T S GIA        S T++  AD A+Y AK  G++ 
Sbjct: 488 AERILKTFA--PPFMLSGQEVFVTTSIGIATFPDDSDNSGTLLQHADAAMYEAKHKGKSA 545

Query: 255 VVCFSDIENN 264
              F+   + 
Sbjct: 546 YARFTPEMSE 555


>gi|94314579|ref|YP_587788.1| hypothetical protein Rmet_5660 [Cupriavidus metallidurans CH34]
 gi|93358431|gb|ABF12519.1| conserved hypothetical protein; putative PAS/PAC, EAL, GGDEF
           domains [Cupriavidus metallidurans CH34]
          Length = 839

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 95/213 (44%), Gaps = 12/213 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           + +E+LS+  I         Y +  S +    I+  R++ L+  D L+ L N + F   L
Sbjct: 365 LYLEHLSVSSICNQAGECTHYAAIFSDITHRRIAEERLNHLAMHDPLTDLPNRTLFSERL 424

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                +       + ++F D+D FK IND  GH  GD  +  ++ +L         V RL
Sbjct: 425 KQAIIRARRASRRVGVLFLDLDRFKMINDTMGHGTGDDALRVIAMRLKHAVRESDTVARL 484

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPI 233
           GG+EF          +  A +A  L  ++   Q   ++G S+ +T S GI+         
Sbjct: 485 GGDEFTIVVEEIEDIRHVAHIAQVLLDVV--GQPIDAAGRSVFVTPSIGISIYPDDGTDQ 542

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             ++ +AD+A+Y AK+ G+N    F+    ++ 
Sbjct: 543 QQLLMQADRAMYEAKQEGKNTFRFFATQMTSSA 575


>gi|309779026|ref|ZP_07673794.1| GGDEF domain protein [Ralstonia sp. 5_7_47FAA]
 gi|308922186|gb|EFP67815.1| GGDEF domain protein [Ralstonia sp. 5_7_47FAA]
          Length = 505

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 89/197 (45%), Gaps = 12/197 (6%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------G 123
           +V++   + ++L ++    L++      ++  L+  D L+GL    A  S+L        
Sbjct: 297 IVLMLDAVFIVLSFLFAQQLRKRLEMEQQLHLLANTDSLTGLGTRRALDSALDVEWRRAN 356

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAA 182
            ++  ++++  D+D FK  ND +GH  GD  +  ++  +   +     F GR GGEEF A
Sbjct: 357 RHHTPMAVLMIDVDDFKPYNDRYGHAAGDTALRTVARCINDSIKRPGDFAGRYGGEEFCA 416

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER----CHKEPISTIIY 238
               +    A  +A  +R  +  +    +      +T+S G+A         + +  ++ 
Sbjct: 417 VLPNTDLSGAVRVAEAIRAAVLAADEPNAGSAYGKLTVSIGVAVHSGVAAEDDTLEDLVR 476

Query: 239 RADQALYVAKKSGRNRV 255
            AD  LY AK +GRN V
Sbjct: 477 LADGRLYEAKAAGRNVV 493


>gi|239993892|ref|ZP_04714416.1| hypothetical protein AmacA2_05343 [Alteromonas macleodii ATCC
           27126]
          Length = 192

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 66/190 (34%), Positives = 101/190 (53%), Gaps = 9/190 (4%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128
           +TI +   +I   ++ ++     ++ + +  D LSGLLN  AF       I++   Y   
Sbjct: 3   LTILVEAFFIFRPMVAKVSRFATKLQRDANFDYLSGLLNRRAFQIVSQQAIAASHRYKRS 62

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS+V  DID+FK+IND  GH +GDK I  ++  L +       V R+GGEEF      + 
Sbjct: 63  LSVVMIDIDFFKRINDTHGHDMGDKAIKHVAKILKMSSRNADCVARIGGEEFVLLLPDTD 122

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247
              A  LA  LR  I  + +++ +G  I IT+SAG++  + H + I + +  AD ALY A
Sbjct: 123 RAGAFKLAEKLRDRISKNPLDV-NGKFIDITVSAGVSYVKEHHDTIESALSEADDALYKA 181

Query: 248 KKSGRNRVVC 257
           K+SGRN V  
Sbjct: 182 KESGRNNVQL 191


>gi|78044859|ref|YP_359796.1| GGDEF domain-containing protein [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996974|gb|ABB15873.1| GGDEF domain protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 309

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 96/241 (39%), Gaps = 17/241 (7%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           P  F++  S+   +F    IF   +       TPF  L  I    L++ +  + I + L 
Sbjct: 74  PLIFLLNLSLKSVLFF-PAIFTGMLLSTIFYHTPF-DLTSIFKPFLTIALTEVLIKVNLK 131

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
             +             +  LS  D L+GL N                  N + +I+  DI
Sbjct: 132 EKTSQRENYSAEEVRELLNLSYTDNLTGLYNRHFLEKEAKIIDRQTSQSNFEYAILMADI 191

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FKQ ND+ GH  GD+ +  ++  +         V R GGEEF      +S ++A  +A
Sbjct: 192 DFFKQYNDSLGHLAGDEALKKIAGIIKNSVRKQDKVFRFGGEEFLILLPETSPEKARQIA 251

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
             +R  +            + +TIS GI       +    ++  AD ALY AK  GRN V
Sbjct: 252 ERIRNSVAR-------DLELSLTISIGIGHFPQNGKSFREVLKAADSALYQAKNKGRNTV 304

Query: 256 V 256
            
Sbjct: 305 C 305


>gi|330960912|gb|EGH61172.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 964

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 11/194 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI----- 131
           T +L L        +EL  +  R+   +  D L+GL N S     L    +   +     
Sbjct: 508 TANLRLEARVRDRTRELDQANARLQYENSHDSLTGLPNRSQLQQRLKQAWQDFCVQDRQL 567

Query: 132 --VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
             +F D+D FK IND+ GH  GD ++   +++L         + RLGG+EFA   + ++ 
Sbjct: 568 VVMFIDLDRFKMINDSLGHHCGDILLVQAAERLRSCMREGDLLARLGGDEFAVLGINAAL 627

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
           Q    +A  +    E  Q  +    ++  + S G+  A+R   +  + ++  AD A+Y  
Sbjct: 628 QTGVDIAQRILTAFE--QPFVIDDHTVFSSCSIGVVGADRQFHQEPADLLRDADTAMYRV 685

Query: 248 KKSGRNRVVCFSDI 261
           K  GR+    F+  
Sbjct: 686 KNGGRDSFAVFNQA 699


>gi|289677667|ref|ZP_06498557.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
 gi|330901317|gb|EGH32736.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330941309|gb|EGH44169.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 332

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
              + E     + + +L+  D L+   N   F                 L+ +  DID F
Sbjct: 154 AEDITEKKHLEDELQRLATTDVLTQSSNRRHFFECAQREFELARLNGTPLAFLLLDIDDF 213

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND +GH  GD V+  +++            GR+GGEEFAA   G +   A  +A  L
Sbjct: 214 KLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCAPDMAMQIAERL 273

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           ++ I+      S G +  IT S G+      +P + T+  RAD A+Y AK+ G+N++V 
Sbjct: 274 QREIQRQNFQ-SGGTTFSITASQGLTNLGADDPSLETLYGRADAAMYQAKRQGKNQIVL 331


>gi|237654266|ref|YP_002890580.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
 gi|237625513|gb|ACR02203.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
          Length = 583

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 11/184 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           + + +     +  ++   +  D L+GL N   F   L         + E+ +++  D+D+
Sbjct: 400 TMTDITSRKQTEEKLRFRANHDALTGLPNRRLFEDRLQSAIASALRHGERFALMLVDLDH 459

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAN 197
           FK +ND FGH  GD ++  +  +L +       V RLGG+EFA         ++AA +A 
Sbjct: 460 FKGVNDRFGHLAGDALLVEVGRRLELCVRASDTVARLGGDEFAVILGEVGGREDAAEVAE 519

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            +   +      +  G + HI  S GIA     +     +  RAD ALY  K  GR    
Sbjct: 520 RICAAMA-LPFELGEGVA-HIGASVGIALGPQDDADAGELQRRADAALYAVKHDGRGGFR 577

Query: 257 CFSD 260
              +
Sbjct: 578 FHGE 581


>gi|296165035|ref|ZP_06847590.1| diguanylate cyclase/phosphodiesterase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295899683|gb|EFG79134.1| diguanylate cyclase/phosphodiesterase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 769

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 106/238 (44%), Gaps = 13/238 (5%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI 85
           T     ++ +  F+ +   +    L   G+ P +   Y     L+L ++  T  ++   +
Sbjct: 282 TNWARLTLPYVGFMGSTALLTFQVLVGRGIDPLFASTY-----LALALLVATRYVVAMRV 336

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--KLSIVFFDIDYFKQIN 143
              + ++L  +  R++  +  D L+GL N       L          ++F DID FK++N
Sbjct: 337 QRMLTEQLVAAKRRLAYQAHHDALTGLPNRLLLAERLDEAIRGGPFVLIFVDIDDFKEVN 396

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGH  GD+++  +S +L    G    + R+GG+EFA    G +     ++A+ LR  +
Sbjct: 397 DRFGHAAGDELLCAISARLQECLGQSDTLARIGGDEFAILTAG-AVDAPEMVADQLR--V 453

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCF 258
                    G S+ +  S G+    H +       ++ +AD ++Y  K+ G++  V +
Sbjct: 454 ALRSPFSVHGTSVRVRASMGLVSPGHHDGPPTSDDLLRQADISMYTGKRLGKDTAVVY 511


>gi|221215080|ref|ZP_03588047.1| diguanylate cyclase [Burkholderia multivorans CGD1]
 gi|221165016|gb|EED97495.1| diguanylate cyclase [Burkholderia multivorans CGD1]
          Length = 453

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 99/233 (42%), Gaps = 20/233 (8%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI-----SGSILKE 92
           ++A  IF    FL        YG+   L    S   I     L+         + S L E
Sbjct: 227 WLAHAIFAGGFFLLS------YGVVQALQTTRSFSAIYSQQDLMSRLAESMARTESALLE 280

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L  +  ++  ++  D ++G  N   FI+ +               ++  D+D FK IND 
Sbjct: 281 LRRTNQKLEYMAATDPMTGASNRRQFIAQVEREIGRAERDGTPFCLLALDLDNFKHINDA 340

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH +GD+V+  +  Q +        + R+GGEEF A       + A + A  +R  I  
Sbjct: 341 YGHQIGDEVLRGVVRQCLDAIRPSGALARVGGEEFMALLPEMPLEGARMTAERVRSSIAT 400

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +     + +T+S G+A+       +  ++   D+ LY AK+ GRNRVV 
Sbjct: 401 APFGL-DFKRVQVTVSVGVAQYGVDGSTVDALLRVVDERLYQAKREGRNRVVA 452


>gi|213027058|ref|ZP_03341505.1| hypothetical protein Salmonelentericaenterica_33399 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 171

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 60/170 (35%), Positives = 91/170 (53%), Gaps = 5/170 (2%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148
           E  +   R+  ++  D L+G  N  +  S LG      E  +++  D+DYFK  NDN+GH
Sbjct: 1   ENRMLIARLDVMAHQDALTGTANRRSMESFLGDALRQTEPFALIMLDVDYFKNYNDNYGH 60

Query: 149 PVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKII-ENS 206
             GD  +A ++  +     TP   V R GGEEF      SS  EAA++A  ++  + E +
Sbjct: 61  QAGDACLAKVACVVKRSIRTPADLVARYGGEEFVVVLPSSSLNEAALVAKRIQTNLRETA 120

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +++S  S  +T+S GI      + ++ II RAD+ALY AK+ GRNR V
Sbjct: 121 LPHVASAVSETVTVSMGITLSTAGDTVTGIIARADEALYRAKQQGRNRWV 170


>gi|146294681|ref|YP_001185105.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           putrefaciens CN-32]
 gi|145566371|gb|ABP77306.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           putrefaciens CN-32]
          Length = 877

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)

Query: 82  LGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSAFISSLGSYN--------EKLS 130
           L  ++  + KE+        ++   ++ D L+GL N + F+  L            E+ +
Sbjct: 427 LAELNKDLEKEILQRRSMEAKLVHDAKHDALTGLPNRAMFMERLNQAIKHVRRHSLEQFA 486

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SE 189
           ++F D+D FKQIND  GH  GD+ +   + +L         + RLGG+EF        S 
Sbjct: 487 LLFIDLDRFKQINDTLGHLEGDRFLIETASRLRSCIRDNDTLARLGGDEFVILLDSINSI 546

Query: 190 QEAAILANDLRKIIENS----QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            +A  ++  + + I  S     +  +SG SI IT+S         +   +++  AD A+Y
Sbjct: 547 NDAKDISERVIQTISQSYKLGSVEFNSGASIGITVS----GNHKFDTSESMLRNADMAMY 602

Query: 246 VAKKSGRNRVVCFSDIENNTC 266
            AK +G+   V F D  +   
Sbjct: 603 QAKANGKGCYVIFDDSSSQQA 623


>gi|134295938|ref|YP_001119673.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
 gi|134139095|gb|ABO54838.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
          Length = 466

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 60/234 (25%), Positives = 101/234 (43%), Gaps = 22/234 (9%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI------LK 91
           ++A  IF    FL        YG+   L    S   I  +   L+  +S S+      L+
Sbjct: 240 WLAHAIFAGGFFLLS------YGVVQALQSTRSFSAI-YSQEDLMSRLSESMARTESALQ 292

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +  ++  ++  D ++G  N   FI                  ++  D+D FK IN 
Sbjct: 293 ELRRTNQKLEYMAATDPMTGASNRRQFIAQVEREIQRAERDGTPFCLLALDLDNFKNING 352

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH +GD+V+  +  Q +        + R+GGEEF A       + A + A  +R  I 
Sbjct: 353 AYGHQIGDEVLRGVVRQCLEAIRPTGALARVGGEEFMALLPDMPLEGARMTAERVRSSIA 412

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S   +     + +T+S G+A+       +  ++   D+ LY AK+ GRNRVV 
Sbjct: 413 SSPFGL-DFKRVQVTVSVGVAQYGVDGSTVDALLRVVDERLYQAKRDGRNRVVA 465


>gi|117618622|ref|YP_857831.1| MorA [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117560029|gb|ABK36977.1| MorA [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 816

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 13/188 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDID 137
           I+ S +  +  +  +++ L+  D L+ L N +           +    +++L+++F D+D
Sbjct: 368 IAFSDISAIRKAEAQLNHLAYHDPLTELGNRNLLQERLELELKTAQLNHQQLALLFIDLD 427

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILA 196
            FK IND  GH  GD+++  L++++  V        RLGG+EF          QE   LA
Sbjct: 428 GFKLINDTLGHRAGDELLKLLAERIRRVLRHNDVAARLGGDEFLVLIPFFERPQELERLA 487

Query: 197 NDLRKIIENSQINISSGPS-IHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
             L   +      +  G   + ++ S GIA    H     T++  AD A+Y AK  GRN 
Sbjct: 488 EQLLACLRE---PVELGHERVAVSASIGIALYPEHATSPDTLVSAADSAMYEAKNRGRNG 544

Query: 255 VVCFSDIE 262
            + ++   
Sbjct: 545 YLFYTPDM 552


>gi|89095167|ref|ZP_01168092.1| Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF)
           [Oceanospirillum sp. MED92]
 gi|89080598|gb|EAR59845.1| Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF)
           [Oceanospirillum sp. MED92]
          Length = 296

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 10/179 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            L E      ++ +LS  D L+GL N   F       +     Y   LS++  D+D FK+
Sbjct: 105 DLTERQNLEKQLHKLSVTDELTGLFNQRHFYKVMALELDRAKRYKHPLSLICVDLDNFKK 164

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND+ GH  GD+V+  + D L           R GG+EF      +  + AA  A  +R 
Sbjct: 165 VNDSLGHLEGDRVLRMIGDILTETLRNCDVAVRYGGDEFMVLLPETGIKSAAKTAERIRS 224

Query: 202 IIENSQINISSGPS---IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +     +  +   +   +++++S G+ E    E    I+ RAD A+Y +K SG N  V 
Sbjct: 225 VFNTKCLYSADHEAETIVNVSMSLGVTETNGSENADQIVQRADLAMYESKSSGGNNTVL 283


>gi|83593926|ref|YP_427678.1| diguanylate cyclase [Rhodospirillum rubrum ATCC 11170]
 gi|83576840|gb|ABC23391.1| Putative diguanylate cyclase (GGDEF domain) [Rhodospirillum rubrum
           ATCC 11170]
          Length = 582

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 73/254 (28%), Positives = 125/254 (49%), Gaps = 33/254 (12%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYG--LEYILVENL-SLVIISITISLLLGYISG------ 87
           IF   +  I  IF     +TP  G  L+++ +  + +LVI    + +L  +++       
Sbjct: 328 IFFIGIALINLIF----WMTPRVGGELKWLGLSAVQALVIDGFVMGILFAWLAHGRGRQV 383

Query: 88  --------SILKELFISYN----RISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
                    ++KE +++      R  + +R+D L+G+LN  +F             +   
Sbjct: 384 REDAQRKIRLVKESYLAERDLKARAEREARVDYLTGVLNRRSFFELAEGELARSIRFGRP 443

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+++  DIDYFK +ND +GH VGD+V+  ++  +          GR GGEEF A  + +S
Sbjct: 444 LAVLMIDIDYFKAVNDTWGHGVGDEVLQNVAGLIGQTLRGADIFGRTGGEEFTAVIVEAS 503

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVA 247
             EA  +A  L  ++   +I    G +I +T+S G++    ++    I+ R ADQA+Y A
Sbjct: 504 GSEALEVAQRLCAVVAQGKIVGPGGEAIGVTLSIGVSLLRGRDMAFEILSREADQAMYGA 563

Query: 248 KKSGRNRVVCFSDI 261
           K++GRNRVV   D 
Sbjct: 564 KRAGRNRVVVHRDA 577


>gi|330820549|ref|YP_004349411.1| Diguanylate cyclase [Burkholderia gladioli BSR3]
 gi|327372544|gb|AEA63899.1| Diguanylate cyclase [Burkholderia gladioli BSR3]
          Length = 505

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 55/162 (33%), Positives = 82/162 (50%), Gaps = 12/162 (7%)

Query: 106 IDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+GL N  +  +SL             L+I+F DID+FK+ ND +GH +GD+V+A +
Sbjct: 338 TDSLTGLPNRRSLDASLEREWRRAVRARRPLAILFVDIDHFKRYNDEYGHTLGDEVLASV 397

Query: 159 SDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           S ++      +   V R GGEEF      +    A  +A  +R  +    I  +   S +
Sbjct: 398 SARIAQQALRSHDVVARYGGEEFVVVLPDTDSAGARTVAERIRDSVRQLGIEHAGAESGY 457

Query: 218 ITISAGIAERCHK----EPISTIIYRADQALYVAKKSGRNRV 255
           +T+S G+A           ++ +I  ADQALY AK SGRNRV
Sbjct: 458 VTVSVGVATWRPDAGYPTNVAVVIDAADQALYRAKASGRNRV 499


>gi|325293462|ref|YP_004279326.1| diguanylate cyclase [Agrobacterium sp. H13-3]
 gi|325061315|gb|ADY65006.1| diguanylate cyclase [Agrobacterium sp. H13-3]
          Length = 280

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 111/228 (48%), Gaps = 5/228 (2%)

Query: 32  SIFFSIFIATVIFIANI--FLFYIGLTPFYGLEYILVENLSL-VIISITISLLLGYISGS 88
           S   +  IA++  +  +   L    L     L   L   L L   IS T+  L+ +++  
Sbjct: 43  SFRLACLIASIAAVICVVAILTMAQLDLVSDLSNGLTIGLVLSTTISFTVGFLICWLNAR 102

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
            ++ L  S+ R +QLS+ D L+GL N     S+    +    + F DID+FK +ND +GH
Sbjct: 103 QMQLLIQSHERFAQLSQTDALTGLHNRLGLYSNCVHLSTPYCVAFIDIDHFKSVNDRYGH 162

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD VI+ ++  +   F     V R+GGEEF       +      L   +R+ I  + +
Sbjct: 163 LAGDMVISSVAKTIREGFDEAAHVARMGGEEFVVVHT-LAPDRFLELCEGVREKIATTTV 221

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +      I  TIS G+A R ++E    +++ AD ALY AK+SGRNR+ 
Sbjct: 222 HFQD-LQISTTISIGVALRGNREIFEKVMHSADMALYEAKRSGRNRIC 268


>gi|118581136|ref|YP_902386.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Pelobacter
           propionicus DSM 2379]
 gi|118503846|gb|ABL00329.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pelobacter propionicus DSM 2379]
          Length = 858

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E  I+  ++  L+  D L+GL N + F   L             ++++  D+D FK 
Sbjct: 259 DISERKINEEQLEYLATHDELTGLANRALFHDRLEQSLHYAKRSGRIVAVLLLDLDRFKI 318

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLR 200
           IND+ GH  GD++++ ++ +L  V      V RLGG+EF       +E  +  +LA+ + 
Sbjct: 319 INDSLGHSFGDRLLSAVAQRLDRVVRDTDTVARLGGDEFVLLLAEVTEPDDVGLLASRIL 378

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              E +  +   G  I ++ S GI+         ST+I  AD A+Y AK+ G      ++
Sbjct: 379 H--ELAVPHRIEGREIVMSASLGISLYPKDSGDGSTLIRNADIAMYRAKQEGGGVFSFYA 436

Query: 260 DIENNTC 266
              N   
Sbjct: 437 PEMNQRA 443


>gi|323968371|gb|EGB63778.1| diguanylate cyclase domain-containing protein [Escherichia coli
           M863]
 gi|327253087|gb|EGE64741.1| cellulose synthesis regulatory protein [Escherichia coli STEC_7v]
          Length = 564

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTSMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTHLYNRGALFEKARQLAK 421

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               +    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRALDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G++  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGANLAQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 542 LADRRLYLAKQAGRNRV-FASD 562


>gi|313499507|gb|ADR60873.1| Diguanylate cyclase [Pseudomonas putida BIRD-1]
          Length = 544

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 22/235 (9%)

Query: 40  ATVIFIANIFLFYIGLT---PFYGLEYILVENLSLVIISITISLLLGYISGSILKE---- 92
           A +  + ++ L+++  T   P + L                  +   Y   + LK     
Sbjct: 314 APLALVGSLLLWWLARTIARPLWKLAAGARTMDRAGTAEHLHQVRAWYFEAAELKRALLF 373

Query: 93  -LFISYNRISQL---SRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDN 145
            L +   RI +L   ++ D L+GL N  +    +S L + N + + +  DID+FK+IND+
Sbjct: 374 SLNLLQERIGRLNRDAQTDPLTGLGNRRSLEISLSLLEAENREFAAIALDIDHFKRINDS 433

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD+V+  L++ +         + R GGEEF     G++   AA +A  LR  ++ 
Sbjct: 434 HGHEVGDQVLRQLAELMRRCCREGDLLCRTGGEEFLILLPGATLNVAAAVAERLRVTVQE 493

Query: 206 SQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +         +TIS G+       H EP++ +   AD+ALY AK+ GRNRV  
Sbjct: 494 MPVESVGA----VTISLGVTHWDGKTHGEPMNAL-GEADRALYRAKQEGRNRVAF 543


>gi|170025853|ref|YP_001722358.1| diguanylate cyclase [Yersinia pseudotuberculosis YPIII]
 gi|169752387|gb|ACA69905.1| diguanylate cyclase [Yersinia pseudotuberculosis YPIII]
          Length = 378

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 118/256 (46%), Gaps = 22/256 (8%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLLLGYI 85
           +  S+F   FI+T+    N   F +   P   +  IL++   N+  +I +I + L+   +
Sbjct: 120 LLLSLFTIFFISTIALSDNFLAFCLHTAP-SAITVILLDDFHNIFRIIFTIMLPLIGFSL 178

Query: 86  SGSILKE-----------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LS 130
              +L+            L     + S LS ID L+ L N     S L +   +      
Sbjct: 179 HHLMLRRTDNFTRKLVDHLSNEREKFSDLSMIDPLTSLYNRRGLESKLETLLSQSPGNHY 238

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  DID+FK  NDN+GH +GD+ +  +S  +     +   V R GGEEF       SE+
Sbjct: 239 VLLLDIDHFKAYNDNYGHTMGDQALVRISAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEE 298

Query: 191 EAAILANDLRKIIENSQINISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAK 248
            A+ LA  +R+ +    I       +   +T+SAGI+     +  +++   AD+ALY AK
Sbjct: 299 YASQLAERVRQRVLGLDIPHVFNHKVSTTVTLSAGISPLQAYDLAASL-KAADEALYRAK 357

Query: 249 KSGRNRVVCFSDIENN 264
           ++GRN +    D  +N
Sbjct: 358 RNGRNNIEFAKDELSN 373


>gi|187927338|ref|YP_001897825.1| PAS/PAC sensor containing diguanylate cyclase [Ralstonia pickettii
           12J]
 gi|309779961|ref|ZP_07674715.1| GGDEF domain-containing protein [Ralstonia sp. 5_7_47FAA]
 gi|187724228|gb|ACD25393.1| diguanylate cyclase with PAS/PAC sensor [Ralstonia pickettii 12J]
 gi|308921320|gb|EFP66963.1| GGDEF domain-containing protein [Ralstonia sp. 5_7_47FAA]
          Length = 972

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 80/179 (44%), Gaps = 10/179 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDI 136
           Y     +     S   +S+++  D L+GL N       L +  E        L +++ D+
Sbjct: 792 YAFVQDVTAAKRSEMELSRMAHFDALTGLPNRYELYERLRAALERRQRLPAPLGVLYLDV 851

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAIL 195
           D+FK IND +GH  GD V+  ++ +L         V RL G+EF        +  +A   
Sbjct: 852 DHFKHINDTYGHAAGDTVLVEVAHRLQRAVRRTDTVARLAGDEFIILLDPIDAPDDALHT 911

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           A  +   I    I++S G  +H+T S G+A    +       +  AD+ALY AK  GRN
Sbjct: 912 AQKIVSAIR-PPIHLSDGTVLHVTTSVGVACPGPEVHDPDAALREADRALYWAKSRGRN 969


>gi|260568442|ref|ZP_05838911.1| GAF/GGDEF domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|260155107|gb|EEW90188.1| GAF/GGDEF domain-containing protein [Brucella suis bv. 4 str. 40]
          Length = 364

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS--- 130
           L++G I+     I  +   +  R++  +  D L+ L N       ++   S  + LS   
Sbjct: 170 LMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGKLLTQKKSARDGLSRDG 229

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSS 188
            ++  D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF      G+S
Sbjct: 230 FLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTS 289

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++  I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK
Sbjct: 290 KEQTDIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAK 348

Query: 249 KSGRNRVVCFSD 260
             G+NR   F +
Sbjct: 349 SKGKNRFEYFEE 360


>gi|256043155|ref|ZP_05446096.1| c-di-GMP phosphodiesterase A [Brucella melitensis bv. 1 str. Rev.1]
 gi|260564376|ref|ZP_05834861.1| GAF/GGDEF domain-containing protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260152019|gb|EEW87112.1| GAF/GGDEF domain-containing protein [Brucella melitensis bv. 1 str.
           16M]
          Length = 364

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS--- 130
           L++G I+     I  +   +  R++  +  D L+ L N       ++   S  + LS   
Sbjct: 170 LMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGKLLTQKKSARDGLSRDG 229

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSS 188
            ++  D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF      G+S
Sbjct: 230 FLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTS 289

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++  I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK
Sbjct: 290 KEQTDIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAK 348

Query: 249 KSGRNRVVCFSD 260
             G+NR   F +
Sbjct: 349 SKGKNRFEYFEE 360


>gi|254712087|ref|ZP_05173898.1| GAF/GGDEF domain protein [Brucella ceti M644/93/1]
 gi|254715157|ref|ZP_05176968.1| GAF/GGDEF domain protein [Brucella ceti M13/05/1]
          Length = 364

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS--- 130
           L++G I+     I  +   +  R++  +  D L+ L N       ++   S  + LS   
Sbjct: 170 LMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGKLLTQKKSARDGLSRDG 229

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSS 188
            ++  D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF      G+S
Sbjct: 230 FLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTS 289

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++  I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK
Sbjct: 290 KEQTDIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAK 348

Query: 249 KSGRNRVVCFSD 260
             G+NR   F +
Sbjct: 349 SKGKNRFEYFEE 360


>gi|237797914|ref|ZP_04586375.1| PAS:GGDEF protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|237805310|ref|ZP_04592014.1| PAS:GGDEF protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020765|gb|EGI00822.1| PAS:GGDEF protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331026417|gb|EGI06472.1| PAS:GGDEF protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 332

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 9/178 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
              + E     + + +L+  D L+   N   F                 L+ +  DID F
Sbjct: 154 AEDITEKKHLEDELQRLATTDVLTQSSNRRHFFECAQREFELARLNGTPLAFLLLDIDDF 213

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND +GH  GD V+  +++            GR+GGEEFAA   G +   A  +A  L
Sbjct: 214 KLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCAPDMAMQIAERL 273

Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++ I+      S G +  IT S G+       + +  +  RAD A+Y AK+ G+N++V
Sbjct: 274 QREIQRQNFQ-SGGVTFSITASQGLTNLGPEDQSLEALYGRADAAMYQAKRQGKNQIV 330


>gi|193067083|ref|ZP_03048052.1| sensory box-containing diguanylate cyclase [Escherichia coli
           E110019]
 gi|192959673|gb|EDV90107.1| sensory box-containing diguanylate cyclase [Escherichia coli
           E110019]
          Length = 430

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 258 DITEQKRLEEQLEYAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|172036436|ref|YP_001802937.1| hypothetical protein cce_1521 [Cyanothece sp. ATCC 51142]
 gi|171697890|gb|ACB50871.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 724

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 12/192 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDI 136
           I+   + E   +  ++   +  D L+GL N SA +  L            +  +++F D+
Sbjct: 270 INCHDITERHYTAQQLRYDAYHDKLTGLANRSALLEQLKQAITRNQRRREDHFALLFLDL 329

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAIL 195
           D FK IND+ GH +GD+++   + +L         + R GG+EF        + QEA I+
Sbjct: 330 DRFKVINDSLGHLMGDELLKNTAQRLEHCHREGDLLARFGGDEFVFLLRDIQQPQEAIIV 389

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
           A  + ++++       +   I I+ S GI     + +    I+  AD A+Y AK  G+  
Sbjct: 390 AQRIHEVLKA--PFTLNNREIFISASIGITISTDRYDHPEQILRDADAAMYRAKAKGKAC 447

Query: 255 VVCFSDIENNTC 266
              F+   + + 
Sbjct: 448 HEIFAPTMHLSA 459


>gi|108757503|ref|YP_629777.1| FHA domain/GGDEF domain-containing protein [Myxococcus xanthus DK
           1622]
 gi|108461383|gb|ABF86568.1| FHA domain/GGDEF domain protein [Myxococcus xanthus DK 1622]
          Length = 354

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 60/168 (35%), Positives = 83/168 (49%), Gaps = 9/168 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           +  I  L+  D L+G+ N   F+  L         Y   L+++ FDID+FKQIND  GH 
Sbjct: 187 HETIYTLTIADGLTGINNKRYFLEYLEKEMGRSTRYQRTLTLMMFDIDHFKQINDVHGHL 246

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  L+  +  +        R GGEEFA         +A + A  +R++IE     
Sbjct: 247 AGDYVLRELAQSIKRLVRREQCFARYGGEEFAVVLPEDGPDKARLFAEKIRRLIEGKSF- 305

Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
           +     I +TIS G+AE+       +  I  AD  LY AKKSGRNRVV
Sbjct: 306 VYDDKEIPVTISIGVAEQTSDMLEPTHFIKVADANLYKAKKSGRNRVV 353


>gi|71906994|ref|YP_284581.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71846615|gb|AAZ46111.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 862

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 101/215 (46%), Gaps = 19/215 (8%)

Query: 64  ILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +  + LS+  +  T   +  YI + + + E   +  RI+ L+  D L+GL N +  +  L
Sbjct: 356 VYPKWLSISAVVGTNGRVSHYIGTHNDITERKKAEERINALAFFDQLTGLPNRTLLLDRL 415

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                  G  +   +++F D+D FK +ND  GH VGD+++  ++ +L         V RL
Sbjct: 416 KQTILSSGRSDSHGALLFIDLDNFKTLNDTLGHDVGDQLLKQVALRLTHCVRDGDTVARL 475

Query: 176 GGEEFAAAA--LGSSEQEAAI----LANDLRKII-ENSQINISSGPSIHITISAGIAERC 228
           GG+EF      L ++++EAA     +A  +   + +  Q+   +  S   + S G     
Sbjct: 476 GGDEFVVVLANLNTNDKEAAQDTETVAEKILATLNQTYQLGHVTHHS---SASIGATLFK 532

Query: 229 HKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
               PI  ++ +AD ++Y AK +GRN V  F    
Sbjct: 533 GPLIPIDDLMKQADLSMYKAKAAGRNAVRFFDPSM 567


>gi|26987534|ref|NP_742959.1| GGDEF domain-containing protein [Pseudomonas putida KT2440]
 gi|24982203|gb|AAN66423.1|AE016269_10 GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 496

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 10/170 (5%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
             +   ++ L+  D L+GL N            +      + L+I+  D+D+FK  N   
Sbjct: 324 HEAEEDLAMLASTDSLTGLANRRRLDHVLRQEWARAQRSRKPLAILMVDVDHFKAFNQRH 383

Query: 147 GHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           GH  GD  +  ++  +      P     R GGEEF      +    A +LA  +R  +E 
Sbjct: 384 GHAGGDHALREVAKAIEACIRRPADLAARYGGEEFQVVLPETDLAGAQLLAERIRANVEA 443

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                    +  +T+S GI     ++ +  ++  AD+ALY AK +GRNRV
Sbjct: 444 LAPFADDAHA--VTVSIGIGLSGTQQDLGRLLGAADEALYRAKANGRNRV 491


>gi|120600523|ref|YP_965097.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sp. W3-18-1]
 gi|120560616|gb|ABM26543.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sp. W3-18-1]
 gi|319427917|gb|ADV55991.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           putrefaciens 200]
          Length = 877

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)

Query: 82  LGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSAFISSLGSYN--------EKLS 130
           L  ++  + KE+        ++   ++ D L+GL N + F+  L            E+ +
Sbjct: 427 LAELNKDLEKEILQRRSMEAKLVHDAKHDALTGLPNRAMFMERLNQAIKHVRRHSLEQFA 486

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SE 189
           ++F D+D FKQIND  GH  GD+ +   + +L         + RLGG+EF        S 
Sbjct: 487 LLFIDLDRFKQINDTLGHLEGDRFLIETASRLRSCIRDNDTLARLGGDEFVILLDSINSI 546

Query: 190 QEAAILANDLRKIIENS----QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            +A  ++  + + I  S     +  +SG SI IT+S         +   +++  AD A+Y
Sbjct: 547 NDAKDISERVIQTISQSYKLGSVEFNSGASIGITVS----GNHKFDTSESMLRNADMAMY 602

Query: 246 VAKKSGRNRVVCFSDIENNTC 266
            AK +G+   V F D  +   
Sbjct: 603 QAKANGKGCYVIFDDSSSQQA 623


>gi|187926178|ref|YP_001892523.1| diguanylate cyclase [Ralstonia pickettii 12J]
 gi|241665666|ref|YP_002984025.1| diguanylate cyclase [Ralstonia pickettii 12D]
 gi|187727932|gb|ACD29096.1| diguanylate cyclase [Ralstonia pickettii 12J]
 gi|240867693|gb|ACS65353.1| diguanylate cyclase [Ralstonia pickettii 12D]
          Length = 505

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 91/198 (45%), Gaps = 12/198 (6%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------G 123
           +V++   + ++L ++    L++      ++  L+  D L+GL    A  S+L        
Sbjct: 297 IVLMLDAVFIVLSFLFAQQLRKRLEMEQQLHLLANTDSLTGLGTRRALDSALDVEWRRAN 356

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAA 182
            ++  ++++  D+D FK  ND +GH  GD  +  ++  +   +     F GR GGEEF A
Sbjct: 357 RHHTPMAVLMIDVDDFKPYNDRYGHAAGDTALRTVARCINDSIKRPGDFAGRYGGEEFCA 416

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER----CHKEPISTIIY 238
               +    AA +A  +R  +  +    +      +T+S G+A         + +  ++ 
Sbjct: 417 VLPNTDLGGAARVAESIRAAVLAANERNAGSAYGKLTVSIGVAVHSGIAAEDDTLEDLVR 476

Query: 239 RADQALYVAKKSGRNRVV 256
            AD  LY AK +GRN V+
Sbjct: 477 LADGRLYEAKAAGRNVVM 494


>gi|110803451|ref|YP_698847.1| GGDEF/HD domain-containing protein [Clostridium perfringens SM101]
 gi|110683952|gb|ABG87322.1| GGDEF/HD domain protein [Clostridium perfringens SM101]
          Length = 564

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101
           +  +++  +  I L      +  +     L++  + +  L  +  G  +K        + 
Sbjct: 134 ISVVSSAIILAIDLIFSVNADVNIYFQNDLILAGVFV--LTAWTLGFYVKTENDHIKELQ 191

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            L   D L+G+ NH  F   L          NEKLS++F DIDYFK  ND +GH  GD+ 
Sbjct: 192 TLLNEDGLTGVYNHRYFYDKLREKMHISEVENEKLSLIFMDIDYFKHYNDLYGHQKGDEA 251

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSG 213
           +  +   L  +      V R GGEEFA     +SE+EA  +A  +R  +E +      + 
Sbjct: 252 LKKIGKLLKNIARENDLVARYGGEEFAIILPNTSEEEATKIAERIRNKVEKTYFEGQENQ 311

Query: 214 PSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCF 258
           P+ + T+S GIA    K      ++  AD ALY AK   +NRV  +
Sbjct: 312 PNANFTVSVGIAAFPDKAKSELELVKCADDALYRAKFFHKNRVETY 357


>gi|74317971|ref|YP_315711.1| diguanylate cyclase [Thiobacillus denitrificans ATCC 25259]
 gi|74057466|gb|AAZ97906.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 454

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQIND 144
           L     R+ +++  D L+G+ N + F   L            +  S++ FDID FKQIND
Sbjct: 273 LERKAARLERMATTDALTGIANRARFEELLQLEQQHCLRVPGQPFSVILFDIDRFKQIND 332

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD V+  ++ ++  +  T   + R GGEEFA     +    A ++A+ +   + 
Sbjct: 333 TWGHGQGDDVLKTIAREVQGLLRTADTLARWGGEEFAVLLPRTDLDAARVVADKICGALG 392

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              +         +T S G+A     EP + ++ RAD ALY AK+ GRN+VV
Sbjct: 393 QVPLERVG----TVTASFGVATIESGEPGAALLARADGALYEAKRRGRNQVV 440


>gi|326402713|ref|YP_004282794.1| hypothetical protein ACMV_05650 [Acidiphilium multivorum AIU301]
 gi|325049574|dbj|BAJ79912.1| hypothetical protein ACMV_05650 [Acidiphilium multivorum AIU301]
          Length = 661

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 93/197 (47%), Gaps = 12/197 (6%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSI 131
           T++  L  +    L+ L  S  RI  L+  D L+GL N + F  S  +         +++
Sbjct: 201 TVAGFLAVVRSRSLR-LQASEVRIHHLAFHDPLTGLPNRTFFNESADAALAALSGTSIAL 259

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQ 190
           +F D+D FKQ+ND  GHP GD +I     +L  +      V R+GG+EF     G +  +
Sbjct: 260 LFLDLDRFKQVNDTLGHPAGDTLIREFGARLRALVREEDMVARVGGDEFTVMLAGVAGRE 319

Query: 191 EAAILANDLRKIIENSQINIS-SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAK 248
           +   L   +   +E+ ++     G  + + +S G+A    H      ++ +AD ALY AK
Sbjct: 320 DVEKLCARI---VESVRVPFDLDGNRVFVGLSIGVALAPDHGTDRIDLLRKADIALYSAK 376

Query: 249 KSGRNRVVCFSDIENNT 265
            +GR R   F  + ++ 
Sbjct: 377 STGRGRFAFFDPVMDDA 393


>gi|300697792|ref|YP_003748453.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum CFBP2957]
 gi|299074516|emb|CBJ54067.1| putative signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum CFBP2957]
          Length = 914

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136
            +S + + +   +  R+  L+  D L+GL N S FI+ L S  E+       L++ F D+
Sbjct: 457 MLSFADITDFKRAEQRLRHLASHDALTGLTNRSFFIAHLDSAIERARDESRELALFFLDL 516

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAIL 195
           D FK +ND  GH  GD ++   + +L    G    + RLGG+EF        E +  A L
Sbjct: 517 DRFKSVNDTAGHACGDTLLQSAAARLTDCIGPGDVIARLGGDEFVILIEQRVEGKRIAQL 576

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           A  L   +     +  +G   ++ +S G+A   H     + ++  AD A+Y AK++GRNR
Sbjct: 577 AEHLLAAMRE-PFDTVNG-RYYLGVSIGVALYPHDGISGTDLLRSADAAMYRAKQNGRNR 634

Query: 255 VVCFS 259
              ++
Sbjct: 635 AQFYT 639


>gi|237800731|ref|ZP_04589192.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331023589|gb|EGI03646.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 959

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 50/194 (25%), Positives = 87/194 (44%), Gaps = 11/194 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKL 129
           T +L L        +EL  +  R+   +  D L+GL N S     L           ++L
Sbjct: 506 TANLRLEARVRDRTRELDQANARLQYENAHDSLTGLPNRSHLQYRLKQAWQEFCLSGQQL 565

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++F D+D FK IND+ GH  GD ++   +++L         + RLGG+EFA  ++ +  
Sbjct: 566 SVMFIDLDRFKMINDSLGHHCGDILLIQAAERLRSCMREGDLLARLGGDEFAVLSIDAPL 625

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
           Q    +A  +    E  Q  +    ++  + S G+  A+    +  + ++  AD A+Y  
Sbjct: 626 QTGIDIAQRILSAFE--QPFVIDDHTVFSSCSIGVVGADSQFHQEPADLLRDADTAMYRV 683

Query: 248 KKSGRNRVVCFSDI 261
           K  GR+    F+  
Sbjct: 684 KNGGRDSFAVFNQA 697


>gi|224373299|ref|YP_002607671.1| ggdef domain protein [Nautilia profundicola AmH]
 gi|223588497|gb|ACM92233.1| ggdef domain protein [Nautilia profundicola AmH]
          Length = 549

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 62/182 (34%), Positives = 91/182 (50%), Gaps = 10/182 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           S + E   +   +   S  D L+ L N           I++    NEKL+ +  D+DYFK
Sbjct: 360 SAIIEAKYTLELLHNQSIKDPLTNLFNRRHLENILPMLIAAAQRRNEKLAFLMIDMDYFK 419

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
            +ND +GH  GD V+  L++ L+        V R GGEEF        S ++A  +A  +
Sbjct: 420 TVNDTYGHKAGDTVLKTLANILINNVRKSDIVIRYGGEEFLIILQNIKSYEDAINIAEKI 479

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           R  IEN++I + +   I  TIS GI+    H +     I  AD ALY AK++GRN+VV F
Sbjct: 480 RTSIENTKIQLDNTV-IQKTISIGISLFPEHCKQGWECIKYADIALYKAKENGRNQVVLF 538

Query: 259 SD 260
            +
Sbjct: 539 HE 540


>gi|253699305|ref|YP_003020494.1| diguanylate cyclase/phosphodiesterase [Geobacter sp. M21]
 gi|251774155|gb|ACT16736.1| diguanylate cyclase/phosphodiesterase [Geobacter sp. M21]
          Length = 742

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E   +  ++ +L+  D L+GLLN    +  +            K++ +F D++ FK 
Sbjct: 285 DVTEKKRTAEQLERLAYYDSLTGLLNRRMLLDRMEQAIGTAQREGVKVATLFMDLNGFKV 344

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH  GD+++  ++ +L  V      + RLGG+EF  AA    +  A+ +A +L  
Sbjct: 345 INDTLGHKAGDQILIEVAKRLQKVVRKRDTLARLGGDEFVVAATFEKDDNASAIAKNLIN 404

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFS 259
            I  + +       +++  S GI+       +  T++  AD A+Y AK  GR     +S
Sbjct: 405 AI--TPVYQVCDREVYVGASVGISIFPDDGDVPETLLKNADIAMYNAKSQGRGDFCFYS 461


>gi|167946539|ref|ZP_02533613.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 457

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 13/186 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S +  L  S  +I  L+  D L+GL N   F+  L             L+++F DID FK
Sbjct: 246 SDISPLKHSLEQIEHLANHDPLTGLPNRLLFLDRLKVAVRQARRGGHALAVLFLDIDRFK 305

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND+ GH +GD+++  ++ ++         V RLGG+EF        S  EA ++A   
Sbjct: 306 DINDSLGHAMGDQLLLEMAARVRGQVREEDTVARLGGDEFVILIGDVESASEAELVA--- 362

Query: 200 RKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           RK+++  ++ I      I + +S GI+      E    +I  AD A+Y AK+ G +    
Sbjct: 363 RKVMQGLEVPIRLETSEIILRVSMGISLYPNDGESADELIRHADIAMYHAKERGLSEYHF 422

Query: 258 FSDIEN 263
           ++D  +
Sbjct: 423 YNDEMS 428


>gi|218780701|ref|YP_002432019.1| diguanylate cyclase with PAS/PAC sensor [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762085|gb|ACL04551.1| diguanylate cyclase with PAS/PAC sensor [Desulfatibacillum
           alkenivorans AK-01]
          Length = 304

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 11/179 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           +L+E   +   +  L+  D L+ + N +   + +         Y     I+F D+D FKQ
Sbjct: 127 VLREREKA-KELEDLALNDPLTRVANRNCGEARMEAKLNEFRRYGWPFGILFCDVDKFKQ 185

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH VGD V+  ++  L         V R GG+EF         Q  + +A  + +
Sbjct: 186 VNDTYGHDVGDLVLKAVAKTLSGNLRASDIVCRWGGDEFLVILPSIDLQTLSQIAEKVLR 245

Query: 202 IIENSQINISSGPS---IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IIE S++ I SG     + +T S G       + + +++ RAD+ +Y +K++G N+   
Sbjct: 246 IIEKSRVTIGSGDDQRIVKVTSSIGGTVARLDDTVESLLKRADELMYRSKRAGANQAAV 304


>gi|77747817|ref|NP_636891.2| hypothetical protein XCC1520 [Xanthomonas campestris pv. campestris
            str. ATCC 33913]
 gi|77761246|ref|YP_243784.2| hypothetical protein XC_2715 [Xanthomonas campestris pv. campestris
            str. 8004]
          Length = 1010

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 8/176 (4%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
            +L  L I  +   + +  D L+GL N   F  +L             L +   DID+FK+
Sbjct: 835  LLTRLRIKSDAFERQAHEDALTGLPNRRHFDEALARDLSRARRSGRPLVLAILDIDHFKR 894

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            IND + H  GD V+  +   L           RLGGEEFA     ++ ++A  L   +R 
Sbjct: 895  INDQYSHASGDAVLHDVGVLLTAAARASDLPARLGGEEFALLLSDTTLEQAHALCLRIRA 954

Query: 202  IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               +++ +      + +T SAG+AE   +E  S+++ RAD ALY AK +GR+R+  
Sbjct: 955  QF-HARHDWGGVEGLQVTFSAGLAELGEEESGSSLMQRADHALYEAKSAGRDRICI 1009


>gi|15639965|ref|NP_219418.1| sensory transduction histidine kinase, putative [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189026204|ref|YP_001933976.1| sensory transduction histidine kinase [Treponema pallidum subsp.
           pallidum SS14]
 gi|3323303|gb|AAC65936.1| sensory transduction histidine kinase, putative [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018779|gb|ACD71397.1| possible sensory transduction histidine kinase [Treponema pallidum
           subsp. pallidum SS14]
          Length = 387

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 74/256 (28%), Positives = 123/256 (48%), Gaps = 22/256 (8%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV 72
           L   K++ S       ++  +     +  +I +      +   TP+   + I+++   L 
Sbjct: 148 LAPSKSVRSLLDLQPSLFVPLRAKDHLVGLILLGKKINVHEAYTPYD--QSIIMDIAQLA 205

Query: 73  IISITISLLLGYISGSILKELFISYNRISQL-SRIDCLSGLLNHSAFISSLGSYNEKLSI 131
            I+I  +LLL   +  ++ ++ + +   + L +++D L              S  E +S+
Sbjct: 206 AIAINNALLLEQATTDMMTQMKLKHYFFAMLTAKLDTL--------------STQETVSV 251

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FKQIND  GH  GD V+  +++ +           R GGEEF      +S +E
Sbjct: 252 LMLDIDFFKQINDTHGHLCGDLVLQHVAEIIRSCTRPCDIASRYGGEEFMLMLSNNSSRE 311

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKS 250
           AA +A  +R   E   I      SI +T+SAG+AE   ++E   T+I RAD ALY AK++
Sbjct: 312 AAHVAERIRVATEQLTIPYHE-VSIRVTVSAGVAEYLPNQESAETLIKRADSALYQAKQN 370

Query: 251 GRNRVVCFSDIENNTC 266
           GRN+VV     E N C
Sbjct: 371 GRNKVVI---SEKNMC 383


>gi|332094532|gb|EGI99578.1| diguanylate cyclase domain protein [Shigella boydii 5216-82]
          Length = 371

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIVDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G   + A      + +  E + +
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGMPAESAITAMLRVHE--ELNTL 319

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
            + + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 320 RLPNTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|315181102|gb|ADT88016.1| sensory box/GGDEF family protein [Vibrio furnissii NCTC 11218]
          Length = 583

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 53/193 (27%), Positives = 87/193 (45%), Gaps = 13/193 (6%)

Query: 78  ISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           + ++   +S   L E  L  +   + +LS +D L+ + N   F + +             
Sbjct: 386 VLIMARDVSERYLSEQKLEAANQELERLSYLDSLTQVANRRRFDAQMQALWHLHAREKRP 445

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGS 187
           LS++  D+DYFK  ND +GH  GD ++  ++     V   +   V R GGEEFA     +
Sbjct: 446 LSVMLCDVDYFKGYNDRYGHLQGDDILRLVAQAFNDVINRSSDCVARYGGEEFAIILPNT 505

Query: 188 SEQEAAILANDLRKIIENSQINI-SSGPSIHITISAGIAE--RCHKEPISTIIYRADQAL 244
                 ++A  +   +    I   SS  S +ITIS G+       ++   T++  AD AL
Sbjct: 506 ELAGVQLVAQRIHDRLAELAIPHQSSTVSPYITISIGVVTCIPQPEDTPETMLAWADSAL 565

Query: 245 YVAKKSGRNRVVC 257
           Y AK +GRN+   
Sbjct: 566 YQAKANGRNQTSV 578


>gi|299530088|ref|ZP_07043514.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298721745|gb|EFI62676.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 609

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 5/181 (2%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDN 145
            +  L       + L+  D L+GL N  A   +L       + L++ F D+D FKQ+ND 
Sbjct: 428 DIDALKRGEQAANHLANHDALTGLANRRALEETLNQELADGQMLAVCFMDLDGFKQVNDT 487

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIE 204
            GH  GD+V+  ++ +L         V RLGG+EF     G  +  EA  +     + + 
Sbjct: 488 QGHDAGDEVLRVVAARLTAQARAGDCVARLGGDEFVVLLSGLHTPGEAMSVMKRCMEAVR 547

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
              I ++ G  + +  S GI+        + ++  AD+A+Y AK +G+ R+V  SD+  +
Sbjct: 548 Q-PIALNGGVMVQVGSSIGISISTADSSSANLMQSADEAMYSAKHAGKGRIVQHSDLSQD 606

Query: 265 T 265
           +
Sbjct: 607 S 607


>gi|253698749|ref|YP_003019938.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Geobacter sp. M21]
 gi|251773599|gb|ACT16180.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Geobacter sp. M21]
          Length = 721

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 11/183 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L      + QL+  D L+ L N + F   L           + LS++F D+D+FK IND 
Sbjct: 261 LRQRQAHLQQLAHYDPLTRLPNRTLFYDRLAQALNQAERNRQALSVIFIDLDHFKDINDT 320

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIE 204
            GH  GD ++  ++++L  V  +   V RLGG+EF        +   AAI+A  L  +  
Sbjct: 321 LGHRTGDLLLIDVANRLSTVVRSCDTVARLGGDEFTVFTQNVMNADNAAIVAAKLNALFA 380

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                +     I++T S G+       + +  ++  AD A+Y AK  G+N    F    N
Sbjct: 381 K-PFQLGES-EIYVTASIGVTLFPNDGKTVDELLMNADIAMYHAKACGKNVYKMFDRKMN 438

Query: 264 NTC 266
              
Sbjct: 439 EHA 441


>gi|78047102|ref|YP_363277.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78035532|emb|CAJ23178.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 597

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 57/192 (29%), Positives = 86/192 (44%), Gaps = 9/192 (4%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SY 125
           + S+T++          L  L +    + Q S  D L+GL N      +L          
Sbjct: 398 LASLTVAEAAAEQLSLALHNLRL-RETLRQQSIRDPLTGLYNRRYLEETLNHELARCTRR 456

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              LS++  D+D+FK+ ND  GH  GD+V+A + + L+          R GGEE      
Sbjct: 457 ALPLSVLMLDVDHFKRFNDLHGHSGGDRVLAAIGELLLAQTRGEDICCRYGGEELTIILP 516

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
                 A ++A  LR  IE  Q+         +T S G A    H   +++++ RAD AL
Sbjct: 517 EVDLPTACMMAEKLRAGIEALQVMGDGVCLPKVTASFGAASFPDHAGTVASLLQRADAAL 576

Query: 245 YVAKKSGRNRVV 256
           Y AK+ GRN+VV
Sbjct: 577 YRAKQGGRNQVV 588


>gi|332671227|ref|YP_004454235.1| diguanylate cyclase/phosphodiesterase [Cellulomonas fimi ATCC 484]
 gi|332340265|gb|AEE46848.1| diguanylate cyclase/phosphodiesterase [Cellulomonas fimi ATCC 484]
          Length = 795

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 4/175 (2%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--SIVFFDIDYFKQIND 144
              L E       +S  +R D L+GL N + F   L + +     +++  D+D FK +ND
Sbjct: 347 SRALHEQRALQELLSHQARHDPLTGLGNRAHFNDRLAASDGAGGRAVLMIDLDGFKSVND 406

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GHP GD++++ ++ ++  V G    V R+GG+EFA     + E  A   A  + + I 
Sbjct: 407 DNGHPAGDELLSQVAARMRGVVGDRDTVARIGGDEFAVLLEHTDESAAHDAAWRVVRAI- 465

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +  +    ++ +T S G+            +  AD ALY AK +G+N+V  F 
Sbjct: 466 -GEAFVVDAQAVRVTASIGVRLLDGSVGTEEALRDADLALYAAKAAGKNQVCVFD 519


>gi|313683143|ref|YP_004060881.1| response regulator receiver modulated diguanylate cyclase
           [Sulfuricurvum kujiense DSM 16994]
 gi|313156003|gb|ADR34681.1| response regulator receiver modulated diguanylate cyclase
           [Sulfuricurvum kujiense DSM 16994]
          Length = 310

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 87/174 (50%), Gaps = 11/174 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  LSRID L+ + N   F          +   ++ ++I+  D+DYFK+ ND++GH  GD
Sbjct: 133 LEDLSRIDGLTHIPNRRYFDEEYQKKCKEMIREHKTVAILMIDVDYFKRYNDHYGHGKGD 192

Query: 153 KVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           + +  ++  L          V R GGEEF         + AA +A +L K + +  I   
Sbjct: 193 ECLIKIAGALKSSLKRPSDMVARYGGEEFIVILQNIDHEGAANVAQNLIKAVSDLGIKHE 252

Query: 212 -SGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCFSDIE 262
            S  + H+TIS G+A +   E +    ++  AD ALY AK+ GRN++V F +  
Sbjct: 253 YSSTADHVTISLGMAFKPADEKVCTEELLKTADDALYRAKEGGRNQLVIFENKM 306


>gi|291565903|dbj|BAI88175.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 298

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 9/166 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +   + +L+  D L+G+ N    +            YN   S++  DID+FK IND
Sbjct: 134 ELKQALVELEKLATTDALTGIANRRHLLVLGEREFQRTHRYNNPFSVLMIDIDHFKLIND 193

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH +GDK +  ++   V         GR GGEEF      +   EA ++A  +R+ I 
Sbjct: 194 NYGHNIGDKALKIMAAVTVNALRKVDIFGRFGGEEFVVFLPETKADEALVVAERIREAIA 253

Query: 205 NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKK 249
            + I +    +IHIT+S G+      E  +  ++  AD+ALY AKK
Sbjct: 254 TTPIYVDD-QTIHITVSIGVTIYNSSEISLDGLLMEADKALYDAKK 298


>gi|261823793|ref|YP_003261899.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
 gi|261607806|gb|ACX90292.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
          Length = 489

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 113/244 (46%), Gaps = 16/244 (6%)

Query: 28  MIYFSIFFSI-FIATVIFIANIFLFYIGLTPFYGLE-----YILVENLSLVIISITISLL 81
           +IY S+  S   I  +     I L YI +    G+        L E   L  I+ ++ ++
Sbjct: 232 LIYLSLSLSFNKIVVMCSATGIALNYIYINRLIGVHNKIEKEYLFELSYLFQINTSVIII 291

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVF 133
               +   +     +  RI  +S  D L+G+LN  +    +           N+ +S++ 
Sbjct: 292 TALTASFFINGNRKNIKRIELISNHDALTGMLNRRSLNQHMMNIINSIRDGENKMMSLLV 351

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK+IND +GH VGD VI   S  +         + R GGEEF     G S+ E  
Sbjct: 352 LDIDHFKKINDTYGHAVGDNVIRGFSTAIKQHTRPQDLLCRWGGEEFLIIIQGLSKNECL 411

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSG 251
            +A  +R IIE S + IS+G ++  T S G++    +  E        AD+ LY+AK+ G
Sbjct: 412 EIAERIRTIIEGSSLAISNGHAVRCTTSIGVSFFHLERIEDFHDAFKEADKLLYIAKEQG 471

Query: 252 RNRV 255
           RNRV
Sbjct: 472 RNRV 475


>gi|172087714|ref|YP_204898.2| GGDEF domain-containing protein [Vibrio fischeri ES114]
 gi|171902306|gb|AAW86010.2| GGDEF domain protein [Vibrio fischeri ES114]
          Length = 482

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 12/206 (5%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKE-------LFISYNRISQLSRIDCLSGLLN 114
           EY  +  + L    +TIS+L+  ++  + ++       L I    +  ++  D L+GLLN
Sbjct: 277 EYQRLTLIWLFFGILTISMLIAALTSVVTRDKQRIENLLEIRTKELRYMAMHDDLTGLLN 336

Query: 115 HSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
             A    +  Y E     +++ FDID FKQIND +GHP GD+V+  +   +    G  + 
Sbjct: 337 RRAIRDVITRYIEAEKPFALLCFDIDKFKQINDTYGHPEGDEVLRHIGHLMSETLGNNVH 396

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
           V RLGG+EF+     ++  E  +++  +  ++  S   + +   I  TIS G A     E
Sbjct: 397 VSRLGGDEFSIVLKLNNIDELTLISEQIHDLVATSP-TVFNDFEIAQTISLG-AVLWQGE 454

Query: 232 PISTIIYRADQALYVAKKSGRNRVVC 257
            +  ++  ADQALY +K  GRN+V  
Sbjct: 455 TLEELLKAADQALYQSKTMGRNQVTI 480


>gi|217973467|ref|YP_002358218.1| PAS/PAC and GAF sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS223]
 gi|217498602|gb|ACK46795.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS223]
          Length = 749

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 9/184 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQ 141
           S + E   +   I   +  D L+GL N +A    + S+          S +  D+D FKQ
Sbjct: 299 SDISERKKAAQLIKYQANNDSLTGLANRNALFKLIQSFITSDSLTPGFSFMLMDLDNFKQ 358

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND  GH  GD ++  +  Q+       M   RLGG+EFA    G  +++E A LA  + 
Sbjct: 359 VNDTHGHDKGDALLVQVVRQICECLNDTMVFARLGGDEFALLLPGIVNQKELAQLAETIN 418

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           K +    + ++ G  ++ ++S GIA        +  ++  ADQA+Y++K +GRNR   F+
Sbjct: 419 KHVAKRYV-LADGKGVYSSVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFT 477

Query: 260 DIEN 263
           +   
Sbjct: 478 EQMQ 481


>gi|126090207|ref|YP_001041688.1| hypothetical protein Sbal_4570 [Shewanella baltica OS155]
 gi|126174500|ref|YP_001050649.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS155]
 gi|125997705|gb|ABN61780.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS155]
 gi|125999863|gb|ABN63933.1| hypothetical protein Sbal_4570 [Shewanella baltica OS155]
          Length = 749

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 9/184 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQ 141
           S + E   +   I   +  D L+GL N +A    + S           S +  D+D FKQ
Sbjct: 299 SDISERKKAAQLIKYQANNDSLTGLANRNALFKLIQSLITSDSLTPGFSFMLMDLDNFKQ 358

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND  GH  GD ++  +  Q+       M   RLGG+EFA    G  +++E A LA  + 
Sbjct: 359 VNDTHGHDKGDALLVQVVRQICECLNDTMVFARLGGDEFALLLPGIVNQKELAQLAETIN 418

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           K +    + ++ G  ++ ++S GIA        +  ++  ADQA+Y++K +GRNR   F+
Sbjct: 419 KHVAKRYV-LADGKGVYSSVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFT 477

Query: 260 DIEN 263
           +   
Sbjct: 478 EQMQ 481


>gi|323965332|gb|EGB60790.1| diguanylate cyclase domain-containing protein [Escherichia coli
           M863]
 gi|327254699|gb|EGE66315.1| diguanylate cyclase domain protein [Escherichia coli STEC_7v]
          Length = 371

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   +L G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPMLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NTPQVMLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|304408427|ref|ZP_07390073.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus
           curdlanolyticus YK9]
 gi|304342612|gb|EFM08460.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus
           curdlanolyticus YK9]
          Length = 525

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 60/191 (31%), Positives = 92/191 (48%), Gaps = 15/191 (7%)

Query: 83  GYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLS 130
           G  +GS+L      EL      +   +  D L+ +LN + FI         +       +
Sbjct: 327 GERAGSLLMLINVTELKRLQQELEHQAYYDGLTQILNRTQFIRLGREMLEQMRGQRMPFA 386

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++ FDIDYFK++ND +GH  GDK+I  +              GR GGEEF  A    + Q
Sbjct: 387 LMLFDIDYFKRVNDTYGHETGDKMIVHVVSICKERLPEDALFGRYGGEEFVLALPFVTAQ 446

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAK 248
            A  LA  LR  +E + +    G  + +T S GI +    + E + T++ +AD+ALY +K
Sbjct: 447 GAEALAERLRAAMEYAPLLTPKGV-LTVTASFGIVQVAGANDETLETLLSKADEALYTSK 505

Query: 249 KSGRNRVVCFS 259
           + GRNRV  + 
Sbjct: 506 RDGRNRVSAYE 516


>gi|187927646|ref|YP_001898133.1| diguanylate cyclase [Ralstonia pickettii 12J]
 gi|187724536|gb|ACD25701.1| diguanylate cyclase [Ralstonia pickettii 12J]
          Length = 499

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 56/213 (26%), Positives = 97/213 (45%), Gaps = 15/213 (7%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGL 112
            L  +  L +I    + L  +S++++   G ++    L+   ++ N + +L++ D L+GL
Sbjct: 285 ALAAWQRLSWI----VGLSSLSVSLAFCAGVWLLAFALRGRVMAENHLRELTQTDPLTGL 340

Query: 113 LNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VV 164
            N  A           L   + +LS++F D D+FK+ ND  GH  GD  + +L+  +   
Sbjct: 341 KNRRALDVALENEWDRLQRNDSRLSVLFIDADHFKRYNDAHGHAQGDVALQYLAQCISKH 400

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                    R GGEEF      + E  A  +A  +R  +E +  ++        T+S G 
Sbjct: 401 ARRRGDLAARYGGEEFVVLLPDTDEAGATRIAEAIRAEVEGAGASVGDAGLAPFTVSVGC 460

Query: 225 AERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
           A         ++ +   AD ALY AK+ GRNR+
Sbjct: 461 ATARRASFPSLNALTKAADDALYEAKRKGRNRI 493


>gi|15614797|ref|NP_243100.1| response regulatory protein (sensory transduction system) [Bacillus
           halodurans C-125]
 gi|10174853|dbj|BAB05953.1| response regulatory protein (sensory transduction system) [Bacillus
           halodurans C-125]
          Length = 314

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 83/174 (47%), Gaps = 8/174 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L     ++ +LSR+D L+ L+N       +         +    ++   DID+FK IN
Sbjct: 139 EKLKGKIQKVDRLSRVDFLTNLMNRRDMQEKIRAEINRSIRHGRSFTLAIVDIDFFKNIN 198

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD V+      L     +  +V R GGEEF      +  +E       +R+ I
Sbjct: 199 DTYGHDCGDHVLKHFVSTLKNSVRSSDYVSRWGGEEFLLLFPETKLEEGKRACEKIRQKI 258

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             S + I  G SI IT + GI+E      I  +I  AD ALY  KK+G+N+VV 
Sbjct: 259 NESPV-IYKGMSISITATFGISEYRPSVRIEELIKAADDALYKGKKTGKNQVVV 311


>gi|148258088|ref|YP_001242673.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
 gi|146410261|gb|ABQ38767.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
          Length = 777

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 10/191 (5%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFD 135
             +    + E   +  RIS L+R D L+ L N  +F   +           E  +++F D
Sbjct: 316 AVVLLEDITERRHAEARISHLARYDELTTLPNRVSFRDEIERLLRIPPRQGELSALLFVD 375

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAI 194
           +D FKQ+ND  GHP GD+++  +S++L  +     FV R GG+EF        S  +AA+
Sbjct: 376 LDRFKQVNDTLGHPCGDQLLCAVSERLRDMLRPEDFVARFGGDEFVVFQRNIRSNDDAAV 435

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           LA  +   +  S+        + I  S GIA         T++  AD ALY AK  GR  
Sbjct: 436 LARRIVDQL--SERYKIDNHLVEIGASVGIAMTAPGISADTLLKNADMALYRAKAEGRGT 493

Query: 255 VVCFSDIENNT 265
              F D    T
Sbjct: 494 FCFFRDELAQT 504


>gi|331662751|ref|ZP_08363674.1| putative GGDEF domain protein [Escherichia coli TA143]
 gi|331061173|gb|EGI33137.1| putative GGDEF domain protein [Escherichia coli TA143]
          Length = 410

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 238 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 296

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 297 HINDLYGHSKGDEVLCTLARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 356

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 357 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 407


>gi|330979889|gb|EGH78189.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 530

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 87/200 (43%), Gaps = 20/200 (10%)

Query: 81  LLGYISGSILKE---------LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124
           L+G+I   I  E         L      +  ++  D L+GL N   F             
Sbjct: 301 LIGHIHSRIRAEDQLLDSQAALIQLNQHLELIASEDKLTGLANRRRFDQFLEVEFKRARR 360

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAA 183
               LS++  D D+FK+ ND++GH  GD+ +  L+  +   +        R GGEE A  
Sbjct: 361 ERSLLSLILIDADHFKRYNDHYGHLAGDECLIALARVVEQFIRRPSDVAARYGGEEIAVV 420

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRA 240
             G+ E  A  +A  + + I + QI   + P   +TIS G+A     +       +I  A
Sbjct: 421 LPGTDESNARQVAEKILQAIRDEQIEHPASPFGIVTISLGVATFVGTDRQLDQRGLIELA 480

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D+ALY AK  GRNRV   S+
Sbjct: 481 DRALYAAKSQGRNRVNVASE 500


>gi|296137225|ref|YP_003644467.1| diguanylate cyclase [Thiomonas intermedia K12]
 gi|295797347|gb|ADG32137.1| diguanylate cyclase [Thiomonas intermedia K12]
          Length = 400

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 73/259 (28%), Positives = 115/259 (44%), Gaps = 18/259 (6%)

Query: 10  SIWLCHEKNLESF-SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
            +W  H    + F  P T +++    F    AT+++ A  F  + G           + N
Sbjct: 139 GVWGVHASMAQEFGRPVTLLLHGPTLF--IAATLLWRA--FAVFTGNGQALDYREDGLLN 194

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE- 127
             L +  + ++  L  I G +L    +   R+  L+  D L+GLLN  A    L      
Sbjct: 195 ELLTLTLLPVASFLSLIYGGMLMARLV--RRLHDLALKDPLTGLLNRRAAQQLLEREWAS 252

Query: 128 ------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                    ++  DID+FK+IND +GH VGD+V+  L+  L         V R+GGEEF 
Sbjct: 253 YRHKDLPFCVLMIDIDHFKRINDEYGHAVGDRVLTGLATLLREGTRPTDHVARMGGEEFL 312

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRA 240
                +    A   A  LR+   ++   +     + ITIS G+A+   ++     ++ RA
Sbjct: 313 VFLPQTELPSAQAAAERLRQ---HTAAWVLQPEELSITISIGVAQAAAEDSAFDDLLIRA 369

Query: 241 DQALYVAKKSGRNRVVCFS 259
           D+ALY AK +GRNRV    
Sbjct: 370 DRALYAAKSAGRNRVHLAD 388


>gi|325981725|ref|YP_004294127.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas sp. AL212]
 gi|325531244|gb|ADZ25965.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas sp. AL212]
          Length = 1136

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 10/183 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFK 140
           + + ++  S  R++ L+  D L+GL N           I     +  +++ ++ D+D FK
Sbjct: 676 TDITQIKQSEARLAHLAHYDALTGLPNRLLVQSRLHHAIERTLRHGNQIAALYLDLDRFK 735

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
            +ND+ GHP+GD+++  L+ +L         + RLGG+EF           E A++A  L
Sbjct: 736 NVNDSLGHPIGDELLVMLALRLKKRLREEDTLARLGGDEFLVVLEDIKDSNEPAMVAQTL 795

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             ++  +  ++ SG  I I  S GI+        ++ +I  AD A+Y+AK+ GRN     
Sbjct: 796 IDLLA-TPFSLPSGHEIFINTSIGISLFPTDANSVTELIQHADMAMYLAKQEGRNTYRYH 854

Query: 259 SDI 261
           +D 
Sbjct: 855 TDA 857


>gi|229086612|ref|ZP_04218781.1| Sensory box/GGDEF family protein [Bacillus cereus Rock3-44]
 gi|228696694|gb|EEL49510.1| Sensory box/GGDEF family protein [Bacillus cereus Rock3-44]
          Length = 431

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 88/178 (49%), Gaps = 11/178 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           + + EL   Y    QL+  D L+ + N   F   L          N  ++++ FDID FK
Sbjct: 253 TDITELDELYQEQEQLAAFDPLTEIYNRLKFQQLLEEKWKSEERINRTMALILFDIDDFK 312

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD  +  L++ +    G+     R GGE+F+   + ++E+E   +A  LR
Sbjct: 313 KVNDTYGHDFGDLALIQLAELMKSKMGSQHIFARWGGEKFSILVINTTEKEVFQVAESLR 372

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             IE  Q +  S     +T S G+A          +I RAD ALY AKK+G+N+V  +
Sbjct: 373 FFIETKQFSSIS----KLTASFGVALYEQGITKEELIQRADIALYEAKKNGKNQVRLY 426


>gi|291286797|ref|YP_003503613.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809]
 gi|290883957|gb|ADD67657.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809]
          Length = 396

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 84/174 (48%), Gaps = 8/174 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           + +L    N+    S  D L+ L N           I      N    I+  DIDYFK +
Sbjct: 222 VSKLQNDLNKYKTESITDHLTSLYNRKYMDIKMTEEIDRYRRMNTSFCIMLVDIDYFKNV 281

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           NDN+GH +GD+V+  L+  L        F  R GGEEF         + A  +A  +RK 
Sbjct: 282 NDNYGHLIGDQVLKHLAKLLKDSIRKTDFAFRYGGEEFLIMLTNVDVRNATHVAEQIRKK 341

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++ +  ++    S ++T S GIA     +   ++I RAD+ LY AK++GRN++V
Sbjct: 342 LKETNFSLKEN-SFNVTASFGIALFEKDDTQESVIKRADERLYKAKQTGRNKIV 394


>gi|237806992|ref|YP_002891432.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Tolumonas auensis DSM 9187]
 gi|237499253|gb|ACQ91846.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Tolumonas auensis DSM 9187]
          Length = 764

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 10/186 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFF 134
           LL      ++ E+  +   +  LS  D L+ L N       +            LS++  
Sbjct: 320 LLARTFNELMDEVQAAQKNMHDLSITDTLTALGNRRGMEEQVSKMMKTCQLGTPLSMLLM 379

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND+ GH  GD ++  ++ ++  V      + R+GG+EFA     ++ ++  +
Sbjct: 380 DLDGFKLINDSLGHAAGDLLLQEVAQRMRQVMRRQDKLFRMGGDEFAVLMPHTTAEQGHL 439

Query: 195 LANDLRKIIENSQINISSG-PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           LA  L   IE     I  G   + ++ S G+A+   +     ++  AD A+YVAK+ G++
Sbjct: 440 LAERL---IETLVAPIHFGQHRLSVSGSVGVAQWDGETDGLELMRHADLAMYVAKRDGKS 496

Query: 254 RVVCFS 259
            V  F 
Sbjct: 497 CVRLFE 502


>gi|160899923|ref|YP_001565505.1| diguanylate cyclase [Delftia acidovorans SPH-1]
 gi|160365507|gb|ABX37120.1| diguanylate cyclase [Delftia acidovorans SPH-1]
          Length = 531

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 96/251 (38%), Gaps = 32/251 (12%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG------SILK 91
            + TV    +  L          L  +L   L++ +I   ++  +   S       S  +
Sbjct: 280 LVTTVALGRDEALSSWRRQALLTLAVVLGLFLAIALIGWRLTAAMRLRSRAECSLVSARE 339

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL  +  R+  L+  D L+GL N   F   L             LS++  D+DYFK  ND
Sbjct: 340 ELLDANRRLEVLAAQDQLTGLANRRRFDEVLEREARRAAREGTPLSLLLIDLDYFKGYND 399

Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  +   L   V        R GGEE A     + +  A  +A  LR  I
Sbjct: 400 AYGHVAGDACLQAVCSALAQAVQRPGDMAARYGGEELAVVLPNTDKAGAQQVAERLRARI 459

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPIST------------------IIYRADQALY 245
           E   +        H+T S G+A     E  +T                  ++  AD+ALY
Sbjct: 460 EGLALEHRISRFGHVTASIGVATAQGDEAGATQGATQGTTQGSTQGAAVALVEAADRALY 519

Query: 246 VAKKSGRNRVV 256
            AK +GRN V 
Sbjct: 520 RAKAAGRNCVQ 530


>gi|327190385|gb|EGE57482.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 392

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 117/247 (47%), Gaps = 14/247 (5%)

Query: 12  WLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL 71
           WL   +     +P   +   +++ +  I+ V+  A   L   G            E+LSL
Sbjct: 139 WLARAE-----APAPILGIAALYTATAISFVLCAA--VLIADGKLVLGAAPSNWAEDLSL 191

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKL 129
            +  I     +G +S ++ +    + +R+   +  D L+GLLN  A     G+       
Sbjct: 192 AV-CIAGMTGIGALSLALHQWRLAARHRLE--AITDPLTGLLNRRAVFDQYGTRPMGMTT 248

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++ FDID+FK +ND +GH  GD+VI   +++L           RLGGEEFA        
Sbjct: 249 AVIVFDIDHFKSVNDRYGHAAGDRVIMVFAEELQAHCSAGDTAARLGGEEFALVLKEIMP 308

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAK 248
             A ++A  +R+  E  +I+I  G  +  T+S G+A  R       T++  AD+ALY AK
Sbjct: 309 GRAELVAERIRRAFEAREIDI-DGQMLRCTVSVGVAPGRSQMPDFDTMLSAADKALYAAK 367

Query: 249 KSGRNRV 255
           + GRNRV
Sbjct: 368 RGGRNRV 374


>gi|293409805|ref|ZP_06653381.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470273|gb|EFF12757.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 365

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 69/278 (24%), Positives = 120/278 (43%), Gaps = 34/278 (12%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGL-------------TP 57
           + L     L S+  + F+ Y+++ F+  +  ++ ++ +   Y                TP
Sbjct: 91  VLLVALSLLWSWCSYHFIAYWTLQFAYPLCVLLMLSGVVALYFHTPSLLAFVIPLWFTTP 150

Query: 58  FYGLEYILVENLSLVIISITISLLL-------------GYISGSILKELFISYNRISQLS 104
              L      N+   ++    SL L              ++  S   +L    NR+  L+
Sbjct: 151 IASLMLNQQINIHFAVVWCIFSLALYGGRLILLRWFEEAWVQNSYNNQLI---NRLDALA 207

Query: 105 RIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
             D L+G+ N  A  S L          +++  D+D+FK+ ND +GHP GD+ +  ++D 
Sbjct: 208 HRDPLTGIANRRAMNSILHDAMDNGGSFALIMLDVDFFKRYNDTYGHPAGDRCLIQVADA 267

Query: 162 LVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHIT 219
           L      +   V R GGEEFA     ++  EA  +A  +++ ++ + I   +   +  +T
Sbjct: 268 LQRSTRQSEDVVVRYGGEEFAIILFNATLPEAETVAARVKQELKLAAIPHQASAVNAFVT 327

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S GI      +    II  AD ALY AK+SGRNR   
Sbjct: 328 VSQGITCSAPAKTAEQIISDADAALYRAKESGRNRWAL 365


>gi|192359770|ref|YP_001982880.1| response regulator [Cellvibrio japonicus Ueda107]
 gi|190685935|gb|ACE83613.1| Response regulator [Cellvibrio japonicus Ueda107]
          Length = 514

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 13/206 (6%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G +  L++ +S +II   I  +       +  +L      +  LS++D L+ + N   F 
Sbjct: 184 GGDDYLIKPVSFMIIKAKIRAM--ERIAEMRDQLNQLNTELEALSQLDSLTQIYNRRTFN 241

Query: 120 SSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMF 171
                       +   +S +  D+D+FK  ND++GHP GD  +  +S  +      +   
Sbjct: 242 DLAEQQWALAKRHQLPISALMIDVDHFKLFNDHYGHPAGDSCLKKISQAIKSCLHRSADL 301

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAE--RC 228
            GR GGEEF      +  Q A  +A  + + IE   +     PS H +T S G A   R 
Sbjct: 302 FGRYGGEEFIVLLPETDTQGALHVAQSINQAIEALNLRHDVSPSSHLVTASIGGATCVRT 361

Query: 229 HKEPISTIIYRADQALYVAKKSGRNR 254
               +  +I  AD+ALY  K+SGRNR
Sbjct: 362 TGHSLEELIKSADRALYKVKRSGRNR 387


>gi|188577258|ref|YP_001914187.1| Putative signal protein with CHASE3 and GGDEF domains [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188521710|gb|ACD59655.1| Putative signal protein with CHASE3 and GGDEF domains [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 563

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 8/170 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNF 146
                 + + S  D L+GL N      SL             LS++  D+D+FKQ ND+ 
Sbjct: 383 LRLRESLRRQSIRDALTGLYNRRYLEESLSHELARCARRGLPLSVLMLDVDHFKQFNDSQ 442

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD ++A + + L+    T     R GGEEF      +  +EA  +A  +R  I   
Sbjct: 443 GHAGGDLLLAAVGELLLTRLRTEDVACRYGGEEFTVLLPEADGEEALRVAEQIRGYIAAL 502

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
            ++  +     +T S G+A      E  +++I +AD ALY AK  GRNRV
Sbjct: 503 AVSDEARALPKVTASIGVASFPADGEQGASLIQKADAALYRAKHRGRNRV 552


>gi|153801380|ref|ZP_01955966.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|229522481|ref|ZP_04411897.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
 gi|229526494|ref|ZP_04415898.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|229528145|ref|ZP_04417536.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|297579995|ref|ZP_06941922.1| GGDEF family protein [Vibrio cholerae RC385]
 gi|124123046|gb|EAY41789.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|229334507|gb|EEN99992.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229336652|gb|EEO01670.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|229340466|gb|EEO05472.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
 gi|297535641|gb|EFH74475.1| GGDEF family protein [Vibrio cholerae RC385]
          Length = 339

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 21/220 (9%)

Query: 58  FYGLEYILVENLSLVIISITISLLLG----------YISGSI------LKELFISYNRIS 101
           F  LE +  +NLS+  +   +  L+           +++  +      +  L     ++ 
Sbjct: 118 FKDLERVEQDNLSIEEVMTVVRRLVSDSKDIRHSTNFLNNQLNAATLEISRLKEQLAKVQ 177

Query: 102 QLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           + +  D LSGL N  AF     +L    +++S++  DID+FK +NDN+GH  GD++I  +
Sbjct: 178 KDALFDSLSGLYNRRAFDGDMFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAI 237

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217
           + +L  +    +   R GGEEFA  A   S + A   A  +R+ IE   + +  SG S+ 
Sbjct: 238 AKRLQSLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVG 297

Query: 218 -ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            IT S G+ E+   + + ++I RAD  LY AK  GRNRV+
Sbjct: 298 SITASFGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 337


>gi|89094011|ref|ZP_01166955.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Oceanospirillum
           sp. MED92]
 gi|89081685|gb|EAR60913.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Oceanospirillum
           sp. MED92]
          Length = 1083

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 11/184 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           ++E   +  ++  L+  D L+GL N   F   L        +  +K++++ FD+D FK++
Sbjct: 645 VEERTRAEKQVRHLAEHDALTGLANRRGFQQELECILRKADTNGKKVALLLFDLDRFKEV 704

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH +GD ++  ++D L         V RLGG+EFA      +  +  I  N   +I
Sbjct: 705 NDTLGHAIGDDLLCSVADLLRANIRDEDIVARLGGDEFAIVMSNLASVDGVI--NTALRI 762

Query: 203 IENSQINIS-SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           IE     +  SG +I    S GI            ++  AD A+Y AK  G      F  
Sbjct: 763 IETLSKPLQLSGHTIRTGTSVGITVYPDDSGDPEQLMLHADLAMYQAKDKGGQCYQFFEL 822

Query: 261 IENN 264
             ++
Sbjct: 823 PMHD 826


>gi|332715768|ref|YP_004443234.1| diguanylate cyclase with GAF sensor [Agrobacterium sp. H13-3]
 gi|325062453|gb|ADY66143.1| diguanylate cyclase with GAF sensor [Agrobacterium sp. H13-3]
          Length = 592

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 4/167 (2%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHP 149
                R+  ++R D L+GLLN  +   +L  + EK    L+ +  DID+FK+ ND FGH 
Sbjct: 418 LQLRQRLVGMARQDALTGLLNRRSLDETLNRHIEKPTNSLACLMLDIDHFKRFNDRFGHD 477

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+ +++  L    G    + R GGEEF         ++A  +A  LR  +E +   
Sbjct: 478 AGDAVMQYVAQVLSEAVGDLGELFRFGGEEFTVLMPAGGIEDAIKVAEKLRHAVERAPFT 537

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                   ITIS GIA       +S+++ RAD AL  AK++GRN+ V
Sbjct: 538 YRGRLLDSITISIGIATSPGAGTVSSVLERADAALLSAKQTGRNKWV 584


>gi|300923880|ref|ZP_07139896.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|300419877|gb|EFK03188.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
          Length = 302

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 100 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 159

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 160 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 219

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 220 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 279

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 280 LADRRLYLAKQAGRNRVCA 298


>gi|288923375|ref|ZP_06417504.1| diguanylate cyclase [Frankia sp. EUN1f]
 gi|288345265|gb|EFC79665.1| diguanylate cyclase [Frankia sp. EUN1f]
          Length = 568

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 94/202 (46%), Gaps = 10/202 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           +L   L LV+I++    +    +  ++  L  S + +   +  D L+GL N + F   L 
Sbjct: 350 VLYGALGLVLIALLRQTVTLADNTRLVGHLRDSRDELHHQAFHDPLTGLANRALFNDRLQ 409

Query: 124 -------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                   + + ++++F D+D FK +ND  GHP GD+++   + +L         V RLG
Sbjct: 410 QAVTRHDRHGDPIAVLFCDLDDFKDVNDTLGHPAGDELLRATARRLTSSVRAADTVARLG 469

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           G+EFA    G  +  A    + +   I      + +  +I  +I   + E         T
Sbjct: 470 GDEFAVLLEGPHDPAAT--GHRIAATIRGPCPLVGTTRTIQASIGMVVVEPAVGPLTAET 527

Query: 236 IIYRADQALYVAKKSGRNRVVC 257
           +++ ADQA+Y AK+ G+ ++V 
Sbjct: 528 LLHHADQAMYTAKRRGKGQMVI 549


>gi|238783426|ref|ZP_04627449.1| hypothetical protein yberc0001_19770 [Yersinia bercovieri ATCC
           43970]
 gi|238715671|gb|EEQ07660.1| hypothetical protein yberc0001_19770 [Yersinia bercovieri ATCC
           43970]
          Length = 572

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 13/177 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           +L  +  R+   +R D L+ L N   F              +  L+I+  DIDYFK  ND
Sbjct: 389 KLIKANRRLEIQARTDSLTKLPNRREFKKVLAHEFMRARRSDSPLAILMIDIDYFKNFND 448

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  L          V R GGEEFAA    + ++ A+++A  + + I
Sbjct: 449 YYGHISGDACLRLVARTLRKSLKRNTDIVARYGGEEFAAILPDTDQEGASLVAEHILQSI 508

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-----PISTIIYRADQALYVAKKSGRNRV 255
               I  S      +TIS G+      +       + ++  ADQALY +KK+GRN+ 
Sbjct: 509 RAMGIKHSDSKFRKVTISLGVTVYQAHQHAGITDQADLMLTADQALYYSKKNGRNQF 565


>gi|209546961|ref|YP_002278879.1| diguanylate cyclase with PAS/PAC sensor [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209538205|gb|ACI58139.1| diguanylate cyclase with PAS/PAC sensor [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 642

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 57/196 (29%), Positives = 87/196 (44%), Gaps = 13/196 (6%)

Query: 77  TISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NE 127
           T   ++  I+ +   E  L +S   +  L+  D L+G++N   F  +           N 
Sbjct: 435 TAMAVVSDITATKQAEIALRLSAEELKSLAETDGLTGMVNRRTFDEAFARETSGSGRRNM 494

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALG 186
             S++  DID FK  ND +GHP GD+ +  +S  L   V      V R GGEEF      
Sbjct: 495 LFSLLMVDIDRFKAYNDTYGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFVVFLPD 554

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQA 243
           +S + A I+A    + +    I  S      +T S G++     E     + ++  AD A
Sbjct: 555 TSAKGAMIVAEQFARRLAQEDIVHSGSEFARVTASIGVSCATGAELRTNPNRLLTEADAA 614

Query: 244 LYVAKKSGRNRVVCFS 259
           LY AK  GRNR++  S
Sbjct: 615 LYEAKTQGRNRILAHS 630


>gi|104780159|ref|YP_606657.1| hypothetical protein PSEEN0937 [Pseudomonas entomophila L48]
 gi|95109146|emb|CAK13843.1| conserved hypothetical protein; GGDEF domain membrane protein
           [Pseudomonas entomophila L48]
          Length = 498

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 8/170 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNF 146
             +   ++ L+  D L+GL N                     L+++  D+D+FK  N   
Sbjct: 324 HEAEQGLATLAATDSLTGLANRRRLDQVLRQEWARAQRNRRPLAVLMVDVDHFKAFNQRH 383

Query: 147 GHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           GH  GD V+  ++  + +    P     R GGEEF      +    A +LA  +R  +E 
Sbjct: 384 GHAGGDNVLREVAKTIELCIRRPADLAARYGGEEFQVVLPETDLAGAQLLAERIRGSVEA 443

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                    S+ +++  G+     ++ ++ ++  AD+ALY AK +GRNRV
Sbjct: 444 MPPFGDDERSVTVSVGIGLHIPGTQQDLAALLGDADEALYRAKANGRNRV 493


>gi|150391428|ref|YP_001321477.1| diguanylate cyclase [Alkaliphilus metalliredigens QYMF]
 gi|149951290|gb|ABR49818.1| diguanylate cyclase [Alkaliphilus metalliredigens QYMF]
          Length = 746

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 11/176 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           + L    N++ +LS +D L+G+ N   F                 LS++F DID+FK+ N
Sbjct: 566 QALEAVNNKLMKLSELDGLTGIPNRRTFDEYFDFRWTKAQQEYSPLSLLFIDIDHFKEYN 625

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+VI  ++  L   V     FV R GG+EF A    +  Q A  +A  +++ 
Sbjct: 626 DFYGHIDGDEVIRQVATALEDAVQREGDFVARYGGDEFVAILPNTGSQGALQVAEVIQQN 685

Query: 203 IENSQINISSGPSI-HITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
           I+N +I      +  +IT S GIA            +I  +D+ALY AK+ GR+R+
Sbjct: 686 IQNLRIQHKHSQTANYITASIGIASITPNRMLTKEALIKISDEALYKAKEKGRHRI 741


>gi|221633880|ref|YP_002523106.1| developmental regulator MorA [Thermomicrobium roseum DSM 5159]
 gi|221156526|gb|ACM05653.1| developmental regulator MorA [Thermomicrobium roseum DSM 5159]
          Length = 897

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 87/181 (48%), Gaps = 9/181 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E      R++ L+R D L+G+ N  A + +L              +++  D+D+FK+
Sbjct: 471 DISERKSVEERLAYLARHDTLTGIANRHALLETLQERLARAVRSGRSGALLLLDLDHFKE 530

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD V+  ++++L+    +   V R+GG+EFAA     + + A  +   L  
Sbjct: 531 VNDRLGHAAGDAVLRAVANRLIGTLRSDDLVARVGGDEFAALLHPVTREGAECVGRRLLD 590

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +I    + +     I +  S GIA    H   +  ++  AD+ALY AK  GR+R+  +  
Sbjct: 591 VIGQIMVPLPD-RVIRLRASCGIALFPEHGTTVEELLIAADRALYQAKYRGRDRLEVYEP 649

Query: 261 I 261
            
Sbjct: 650 A 650


>gi|119946331|ref|YP_944011.1| diguanylate cyclase [Psychromonas ingrahamii 37]
 gi|119864935|gb|ABM04412.1| diguanylate cyclase [Psychromonas ingrahamii 37]
          Length = 794

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 15/188 (7%)

Query: 82  LGYISGSILKELFISYNRISQ-------LSRIDCLSGLLNHSAFIS-------SLGSYNE 127
           L  ++ S+ + +     +I         ++  D L+ + N                    
Sbjct: 605 LQELNESLERRIKERTQKIEHSKMLLQDVAFKDNLTSIFNRHYLFEISPMLLTVSEETQT 664

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            LS++  D+D+FK+IND +GH  GD ++ F+   +  +        R GGEEF      +
Sbjct: 665 PLSLLLIDVDHFKKINDTYGHLTGDNILKFIVKNIQAILRADDIFVRFGGEEFIILLPKA 724

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
           + +E+ ++A  LR  +E +  +  +G  I IT+S G ++  H E +  +I RAD ALY A
Sbjct: 725 NLEESVMVAEKLRLSVEQNNYH-KNGMDISITVSIGASQYQHTETLEKLISRADLALYSA 783

Query: 248 KKSGRNRV 255
           K+ GRN+V
Sbjct: 784 KEKGRNQV 791


>gi|86357960|ref|YP_469852.1| hypothetical protein RHE_CH02345 [Rhizobium etli CFN 42]
 gi|86282062|gb|ABC91125.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 417

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 58/189 (30%), Positives = 87/189 (46%), Gaps = 12/189 (6%)

Query: 89  ILKELF-ISYNRISQL--SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           IL+EL   + +R+  +  +  D L+  +   AF             +   LS + FDID+
Sbjct: 154 ILEELAGAAMDRLELMQSAATDSLTEAMTRRAFKQEAEQLIALALRHQHDLSCIVFDIDH 213

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND  GH  GD V+  ++             GR+GGEEFA          A  +A  
Sbjct: 214 FKQVNDRHGHAAGDAVLKAVASACKATLRAGDLFGRIGGEEFAVVLPHVDRDGAVAVAEK 273

Query: 199 LRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +R  I +  +    G  +H+T S G  A     + I T++ +AD A+Y AK  GRNR V 
Sbjct: 274 IRAAIASQPVRSDHGV-LHVTASLGSSALSIVSKEIETLLAQADAAMYQAKNGGRNRCVS 332

Query: 258 FSDIENNTC 266
           +S I  +  
Sbjct: 333 WSSIHADHA 341


>gi|78484802|ref|YP_390727.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78363088|gb|ABB41053.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2]
          Length = 349

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 97/185 (52%), Gaps = 10/185 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           S + +  L    ++ + +++ D L+ + N   F       +          +++  DID+
Sbjct: 166 SSAEIMRLKKELDKATAIAKTDELTNIPNRRGFNEIIENMMKEANEKQSSFALLVLDIDF 225

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++ND +GH VGD ++ +L+  L         + R+GGEEF A    +S   A  LAN 
Sbjct: 226 FKKVNDTYGHLVGDSILRYLAKSLHNETKGKDSIARIGGEEFVAILPSTSYDSALKLANT 285

Query: 199 LRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +R+ I +  +++ +  + I +TIS G+A     E + ++  RAD+ LY+AK +GRNRV  
Sbjct: 286 IREKIASRPLHVKNNANPITLTISIGVAMFQLNETLDSLFTRADKCLYMAKSNGRNRV-- 343

Query: 258 FSDIE 262
           + + E
Sbjct: 344 YGEAE 348


>gi|13471907|ref|NP_103474.1| hypothetical protein mlr2027 [Mesorhizobium loti MAFF303099]
 gi|14022651|dbj|BAB49260.1| mlr2027 [Mesorhizobium loti MAFF303099]
          Length = 867

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 8/181 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQ 141
           ++ S   EL ++   I   +  D L+GL N       L        + +++  D+D FKQ
Sbjct: 427 LTESKNAELNLAKAHIEYAALHDSLTGLPNRRYLDELLAENGKPDRRTALLHLDLDRFKQ 486

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH  GD ++   S  +    G   FV R+GG+EF   + G  +   + LA+ +  
Sbjct: 487 INDTLGHAAGDAMLVHASKVIQANVGRDDFVARIGGDEFVVVSHGLDDDGLSALAHRI-- 544

Query: 202 IIENSQINIS-SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            IE+ +  +   G      +S GIA   +   +  ++  AD ALY AK  GRNR   F++
Sbjct: 545 -IEDMRQPVDYRGHPCRFGVSIGIAAN-NGVDVKQLLVNADLALYRAKSRGRNRYEFFNE 602

Query: 261 I 261
            
Sbjct: 603 E 603


>gi|88799529|ref|ZP_01115106.1| GGDEF domain protein [Reinekea sp. MED297]
 gi|88777839|gb|EAR09037.1| GGDEF domain protein [Reinekea sp. MED297]
          Length = 377

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 105/248 (42%), Gaps = 11/248 (4%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITI 78
                P   M    +   + I  +  +  + + +        ++Y       L+   +T+
Sbjct: 119 WVYLLPPVVMFLSGLKRGMMITALFVLGYLIIVFFPGNALGAVDYSYEFKTRLLYSFLTL 178

Query: 79  SLLLGYISGSI---LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEK 128
           + L      S     ++L        + +  D L+ LLN       +          N+ 
Sbjct: 179 TFLAAVYEQSRQSSYQKLNELKQDFERQASQDTLTHLLNRRGMRERIRYEVRRSQRNNQP 238

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           ++ +  D+D+FK+IND++GH  GD V+  +S  L         + R GGEEF      ++
Sbjct: 239 ITFILADLDHFKEINDHYGHDTGDTVLIQVSQLLQDSVRQQDSIARWGGEEFLFLLPETN 298

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
            ++A  LA  +R IIE+  +N S  P +  T+S GIAE    E   + I  AD  LY AK
Sbjct: 299 ARQAMQLAEKIRSIIESHPLN-SDQPPLTTTMSFGIAEMLDLENHQSTIAEADNRLYQAK 357

Query: 249 KSGRNRVV 256
             GRN VV
Sbjct: 358 SQGRNCVV 365


>gi|119898699|ref|YP_933912.1| sensor protein [Azoarcus sp. BH72]
 gi|119671112|emb|CAL95025.1| hypothetical sensor protein [Azoarcus sp. BH72]
          Length = 1005

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 73/171 (42%), Gaps = 8/171 (4%)

Query: 94   FISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNF 146
                  + Q +  D L+GL N                     L++   DID+FK+ ND +
Sbjct: 830  LRLREALRQQAIHDPLTGLFNRRYLDDVLNHELVRAQRDGTPLTLAMLDIDHFKRFNDEY 889

Query: 147  GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
            GH  GD V+A +   L           R GGEE A     SS + A     +L ++I   
Sbjct: 890  GHEAGDLVLAEIGRILREQLRRSDVPCRFGGEELAIVMPASSAENATERLEELAQMIGRL 949

Query: 207  QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            Q+         +T+SAG+AE   H    + ++  AD ALY AK  GR R+V
Sbjct: 950  QLAFGGRRLPAVTLSAGVAEAPIHGADSAHLLRSADLALYQAKAQGRARIV 1000


>gi|225686086|ref|YP_002734058.1| GAF/GGDEF domain-containing protein [Brucella melitensis ATCC
           23457]
 gi|260756947|ref|ZP_05869295.1| predicted protein [Brucella abortus bv. 6 str. 870]
 gi|260882760|ref|ZP_05894374.1| predicted protein [Brucella abortus bv. 9 str. C68]
 gi|261215736|ref|ZP_05930017.1| predicted protein [Brucella abortus bv. 3 str. Tulya]
 gi|265993313|ref|ZP_06105870.1| predicted protein [Brucella melitensis bv. 3 str. Ether]
 gi|297249880|ref|ZP_06933581.1| GAF/GGDEF domain-containing protein [Brucella abortus bv. 5 str.
           B3196]
 gi|225642191|gb|ACO02104.1| GAF/GGDEF domain protein [Brucella melitensis ATCC 23457]
 gi|260677055|gb|EEX63876.1| predicted protein [Brucella abortus bv. 6 str. 870]
 gi|260872288|gb|EEX79357.1| predicted protein [Brucella abortus bv. 9 str. C68]
 gi|260917343|gb|EEX84204.1| predicted protein [Brucella abortus bv. 3 str. Tulya]
 gi|262764183|gb|EEZ10215.1| predicted protein [Brucella melitensis bv. 3 str. Ether]
 gi|297173749|gb|EFH33113.1| GAF/GGDEF domain-containing protein [Brucella abortus bv. 5 str.
           B3196]
 gi|326410413|gb|ADZ67477.1| GAF/GGDEF domain-containing protein [Brucella melitensis M28]
 gi|326553706|gb|ADZ88345.1| GAF/GGDEF domain-containing protein [Brucella melitensis M5-90]
          Length = 391

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS--- 130
           L++G I+     I  +   +  R++  +  D L+ L N       ++   S  + LS   
Sbjct: 197 LMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGKLLTQKKSARDGLSRDG 256

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSS 188
            ++  D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF      G+S
Sbjct: 257 FLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTS 316

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++  I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK
Sbjct: 317 KEQTDIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAK 375

Query: 249 KSGRNRVVCFSD 260
             G+NR   F +
Sbjct: 376 SKGKNRFEYFEE 387


>gi|319424691|gb|ADV52765.1| diguanylate cyclase [Shewanella putrefaciens 200]
          Length = 346

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           +EL  + +R+ +LS  D L+ + N   F   L          +  L+++  DID+FK  N
Sbjct: 160 RELAEANSRLEKLSNTDGLTNIGNRRLFDHILQMEWSRGQRSSAPLALIMLDIDHFKLFN 219

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D++GH  GD  +  L+  L          V R GGEEF      + +Q A   A  + ++
Sbjct: 220 DHYGHLAGDDCLKLLAKGLSQSGRRAGELVARYGGEEFVILLPNTDQQTALDTAQYIHQL 279

Query: 203 IENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I++  I         +T+S G+   E   +     ++ +AD ALY+AK +GRN +   S
Sbjct: 280 IQSLAIPHVKTDLGTVTVSLGVTCIEPSEQHSALELVRQADAALYLAKSAGRNCIRYMS 338


>gi|291618882|ref|YP_003521624.1| YdcR [Pantoea ananatis LMG 20103]
 gi|291153912|gb|ADD78496.1| YdcR [Pantoea ananatis LMG 20103]
          Length = 1231

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 59/274 (21%), Positives = 116/274 (42%), Gaps = 22/274 (8%)

Query: 10  SIWLCHEKN-LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFY--------IGLTPFYG 60
           ++WL  +          T  +  S+     IA + +   +   +         G+   + 
Sbjct: 156 ALWLAFKLREGHEGRVATLRVCASVVMGAAIAGMHYTGMMAAEFPAGSHSMDAGVNSNWL 215

Query: 61  LEYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSA 117
              + V  L+++ I++ +S+L   +      +   L  +   ++QL+  D L+ L N   
Sbjct: 216 AMVVTVVTLAILGITLLVSMLDARMQARTSILASSLAEANRELAQLALHDNLTRLPNRIL 275

Query: 118 FISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
               L            + +++F D+D FK +ND FGH +GD ++  +++++        
Sbjct: 276 LEDRLEQAINKANRECSQFALMFMDLDGFKAVNDAFGHHIGDSLLISVTERMSEQMKGYY 335

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-H 229
            + RLGG+EF      +   +AA +A+ L K I+  +    S   + +++S GI      
Sbjct: 336 TLARLGGDEFVLLIEITEPNDAAAVADQLVKAID--RPFSISRYDLVVSLSIGIVVYPGD 393

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            E    +++ AD A+Y  K +GRN    F    N
Sbjct: 394 GEDERELMFNADAAMYHTKNNGRNGYTFFQPSMN 427


>gi|228918028|ref|ZP_04081558.1| GGDEF domain protein [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228841616|gb|EEM86730.1| GGDEF domain protein [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 351

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 108/227 (47%), Gaps = 12/227 (5%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           S+F   + F  N++  +I   P   L   +   ++L ++  +++  + +IS + + +   
Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLSMLFKDM-SIVALYLVCSSVAAYITFISANYVLQSNE 182

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
            + ++ Q + ID L+GL N   F   +  +       N  L ++  DID+FK +ND +GH
Sbjct: 183 LFQKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSVNDTYGH 242

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           P GD+V+  +   L  V   P    R GGEEFA             +   +R  +E    
Sbjct: 243 PAGDEVLKQIGRILREVSMFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAAVEKHSF 302

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  G  I IT+S GI+    ++     I  AD ALY +K++GRN+V
Sbjct: 303 QLLDGTKIKITVSVGISVY--EQSPERFIQAADDALYYSKRNGRNQV 347


>gi|226311730|ref|YP_002771624.1| signaling protein YkoW [Brevibacillus brevis NBRC 100599]
 gi|226094678|dbj|BAH43120.1| probable signaling protein YkoW [Brevibacillus brevis NBRC 100599]
          Length = 805

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 10/183 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDI 136
           ++    +        +I+ L+  D L+GL N       L          ++++ ++F D+
Sbjct: 358 FMIVRDITNKKEYEAKINYLAFHDSLTGLPNRRFVEQQLDQVIMEAQKTDQQVYVLFLDL 417

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK +ND+ GH  GD ++   S +L    G    V RLGG+EF       +E+E + +A
Sbjct: 418 DHFKLVNDSLGHDFGDLLLQEASLRLRECVGKKGTVYRLGGDEFMVILTDVTEREVSSMA 477

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
           N++ + IE  Q     G  ++IT S GI+      +  S ++  AD A+Y AK  G+N  
Sbjct: 478 NEINETIE--QAFFIHGHELYITTSIGISRYPEDGQDRSVLMRNADAAMYAAKDKGKNSF 535

Query: 256 VCF 258
             +
Sbjct: 536 HLY 538


>gi|126665383|ref|ZP_01736365.1| sensory box/GGDEF/GAF/EAL domain protein [Marinobacter sp. ELB17]
 gi|126630011|gb|EBA00627.1| sensory box/GGDEF/GAF/EAL domain protein [Marinobacter sp. ELB17]
          Length = 911

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 13/188 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + E+     ++  +++ D L+ L N       L          NE+L+++F D+D FKQ
Sbjct: 723 DITEVKEYQKQLESMAKYDALTELPNRVLLGDRLTQAMRLAERNNERLALLFIDLDGFKQ 782

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLR 200
           +ND  GH VGD ++  ++ ++           R GG+EF        + + A  + + + 
Sbjct: 783 VNDTLGHGVGDDLLKKITWRVAQELRGSDTFSRFGGDEFVVVLPEIGKMERAESVVSRIL 842

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCF 258
             I        +   I IT S G+      E      ++ +ADQA+YVAK+ GRN+   F
Sbjct: 843 LAIAEK--VTLAEKEIFITASIGVTFYPQSETLDADQLLRQADQAMYVAKQKGRNQFQYF 900

Query: 259 SDIENNTC 266
            D EN+  
Sbjct: 901 -DTENDKA 907


>gi|123442044|ref|YP_001006027.1| hypothetical protein YE1746 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089005|emb|CAL11819.1| hypothetical protein YE1746 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 440

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 11/188 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVF 133
           ++ Y S   + EL  S + +  L++ D L+G+ N   F        +K       LS++ 
Sbjct: 249 VIWYGSFFDITELKQSESILKALAQTDVLTGVANRRHFDDIYQHIWQKTQTEGGTLSVLM 308

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEA 192
            D D FK  ND +GH +GD  +  + + L          + R GGEEF       +  +A
Sbjct: 309 IDFDNFKSFNDLYGHAMGDVCLKSIVETLSKSIRGGSDILARYGGEEFIVLLAPGTLSDA 368

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKK 249
            ++A  +R  IE   I     P   +TIS G+A             +   AD+ALY AK 
Sbjct: 369 TVVAERMRHSIEELDIPHGMSPHGRVTISVGVASVAEPGEHLVAQDLSAAADKALYRAKT 428

Query: 250 SGRNRVVC 257
           +G+NRV  
Sbjct: 429 AGKNRVEV 436


>gi|78777234|ref|YP_393549.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78497774|gb|ABB44314.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Sulfurimonas denitrificans DSM 1251]
          Length = 427

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 80/165 (48%), Gaps = 11/165 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +++L   D L+ L N + F  ++          +    +V  DID+FK IND +GH VGD
Sbjct: 266 LAELYITDSLTKLYNRAYFDETINMIVKHQRKADSDFILVLVDIDHFKLINDTYGHQVGD 325

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  ++  L         + R GGEEF       +  EA  +   +R  I+NS I    
Sbjct: 326 EVLVAIAKTLKGSLRDNDLIARWGGEEFVIMLKNITLNEAKTIIEKVRVNIQNSIIR--- 382

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +I +T S G+ +    E    I  RAD ALY AKK GRNRVV 
Sbjct: 383 -DNIKVTASFGLTKYIINEDSKEIFKRADDALYEAKKDGRNRVVV 426


>gi|307822955|ref|ZP_07653185.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacter tundripaludum SV96]
 gi|307735730|gb|EFO06577.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacter tundripaludum SV96]
          Length = 617

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 9/176 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL  +  R+  ++  D L+GL N    ++ L          N+ LS++  D+DYFK +ND
Sbjct: 443 ELAAANRRLKSMANTDVLTGLPNRRYALNRLEQEAATALRSNQPLSVLMLDLDYFKSVND 502

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD+V+   ++ +     T     RLGGEEF   A  +    A +LA  +R  IE
Sbjct: 503 TLGHDVGDQVLIHAANLMRTTARTNDITCRLGGEEFLIIAPNTDGSTALLLAERIRNSIE 562

Query: 205 NSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
            +Q          +T+S G+A     +P    ++ RAD ALY+ K+  RN V   S
Sbjct: 563 RNQPK-GLALRHPVTVSIGVAGAMGAKPSWKELMKRADDALYLVKQGKRNGVRLES 617


>gi|288554784|ref|YP_003426719.1| PAS:GGDEF domain-containing protein [Bacillus pseudofirmus OF4]
 gi|288545944|gb|ADC49827.1| PAS:GGDEF domain protein [Bacillus pseudofirmus OF4]
          Length = 389

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 14/186 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            +       N + Q++  D L+ L N  +    +         +    S++F D+D FK 
Sbjct: 185 DITSRKTLENELKQMAFYDELTDLPNRKSLYRHIEKALARSKRHQHTFSLMFIDLDDFKI 244

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD ++  +  +L         + R+GG+EF      + ++E   +A  + +
Sbjct: 245 VNDTMGHDAGDMLLKEVVSRLNESIREEDLISRIGGDEFIVLFEETCKEEIESIAERILE 304

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF-- 258
            +        +    +I++S G++      E   T+I  ADQA+Y AK +G+N    +  
Sbjct: 305 RVA--MPYKINEKEANISLSIGVSMYPDDGEDKDTLIEHADQAMYFAKFNGKNSYKLYTP 362

Query: 259 --SDIE 262
             SD+E
Sbjct: 363 DLSDME 368


>gi|295699148|ref|YP_003607041.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Burkholderia sp. CCGE1002]
 gi|295438361|gb|ADG17530.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Burkholderia sp. CCGE1002]
          Length = 694

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 95/212 (44%), Gaps = 19/212 (8%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           +L+  L L    +  + LLG +S            +I +L+ +D L+GL N +     + 
Sbjct: 227 VLIVTLMLSRFDVRTTFLLGAVS--------KLNGQIVRLATLDALTGLPNRATLTERIE 278

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                        +++F D+D FK IND+ GH  GD V++  + +L     +   V RLG
Sbjct: 279 RAISGARRQRTSFAVLFMDLDGFKTINDSLGHSAGDAVLSAFAQRLQQCVRSSDTVARLG 338

Query: 177 GEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPIS 234
           G+EF   A   +S  +AA LA+ + + +       S    + +  S GIA      + + 
Sbjct: 339 GDEFVVLAEHLTSGDDAAALADGVLERMRQG--TWSDEQPLQVMPSIGIALYPRDGDSVE 396

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           T++  AD A+Y AK++GR     F    N   
Sbjct: 397 TLLQHADAAMYEAKRAGRGTYRFFERSMNEAA 428


>gi|81300191|ref|YP_400399.1| diguanylate cyclase/phosphodiesterase [Synechococcus elongatus PCC
           7942]
 gi|81169072|gb|ABB57412.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Synechococcus elongatus PCC 7942]
          Length = 889

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 89/187 (47%), Gaps = 11/187 (5%)

Query: 82  LGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVF 133
           +G+IS G  + +   +   + + +  D L+GL N                   E L+++F
Sbjct: 443 VGFISFGIDITDRRDNEKALERQACYDFLTGLANRFLLQEQGQELLLLAKRSQEMLAVIF 502

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK INDNFGH VGD+V+  ++ ++         + RL G+EF      +  Q AA
Sbjct: 503 IDLDRFKDINDNFGHEVGDRVLVEVAQRIRQSVRQSDLIARLSGDEFVVILPNTDAQGAA 562

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
            LA  L++ I  +        SI +T S GI+      + +  +I +AD A+Y  K+ GR
Sbjct: 563 TLAQKLQQQI--TPPIAIGDRSIQLTTSLGISLFPVDGDDLEILIKKADTAMYSIKEGGR 620

Query: 253 NRVVCFS 259
           +    F+
Sbjct: 621 DAFSFFT 627


>gi|113969041|ref|YP_732834.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113883725|gb|ABI37777.1| diguanylate cyclase [Shewanella sp. MR-4]
          Length = 482

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 98/222 (44%), Gaps = 21/222 (9%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI------LKELFISYNR----ISQ 102
           I  T +  +  ++   L +V + +T + ++   +  +      L+EL +   +    +  
Sbjct: 260 IDETNYLLIYQVIAATLLVVCLLVTRTYMISRYNRRLTDKNQQLEELRLQLEQSNTELEF 319

Query: 103 LSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+ L N   F            S    + +V  DID+FK+IND  GH VGD ++
Sbjct: 320 LSTHDPLTKLYNRHYFNRQFVHEHRAAASTQGAICLVMLDIDFFKEINDTLGHSVGDTIL 379

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             LS  L         V R GGEEF      +S +    L   +   I+++         
Sbjct: 380 MELSSVLQHCVRESDVVARWGGEEFVILCHNTSLEAVKSLCQRIATAIKDNHF----SGD 435

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +T S GIA+    EP+ +   RAD+ALY AK  GR+++  
Sbjct: 436 VRLTCSFGIAKLAANEPMQSCFERADKALYQAKAQGRDQICV 477


>gi|332161561|ref|YP_004298138.1| hypothetical protein YE105_C1939 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665791|gb|ADZ42435.1| hypothetical protein YE105_C1939 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 569

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 13/177 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           +L  +  R+   +R D L+ L N   F                 L+++  DIDYFK  ND
Sbjct: 386 KLIKANRRLEIQARTDSLTKLPNRREFKKVLAHEFMRARRSASPLAVLMIDIDYFKNFND 445

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  L      +   V R GGEEFAA    + ++ A+++A  + + I
Sbjct: 446 CYGHISGDACLRLVARALRKSLKRSTDIVARYGGEEFAAILPDTDQKGASLVAEHILQSI 505

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNRV 255
               I  S      +TIS G+              S ++  ADQALY +KK+GRN+ 
Sbjct: 506 RAMGIKHSESKFRKVTISLGVTVYQSHLHSSITDQSDLMLAADQALYYSKKNGRNQF 562


>gi|257093231|ref|YP_003166872.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045755|gb|ACV34943.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 734

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 85/187 (45%), Gaps = 11/187 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
              + +   +   I+  +  D L+GL N   F   L           ++L ++F DID F
Sbjct: 279 ARDITDRKKAEETIAFQAFHDLLTGLPNRVLFKDRLAVALTQARRKGKRLGVMFIDIDRF 338

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K +ND +GH  GD+++   + +      +   + R GG+EF       +S ++AA++A  
Sbjct: 339 KLVNDTYGHHEGDELLKSFAQRARSCLRSGDTLARQGGDEFTVLLPDLTSGEDAAVIAAK 398

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  + E  +    +G     T+S GI+      E   T++  AD A+Y  K  G+N  + 
Sbjct: 399 V--LAEVKRPFRIAGLDFFTTVSIGISLFPDSGETPETLLRNADIAMYQIKGRGKNGYLQ 456

Query: 258 FSDIENN 264
           ++   ++
Sbjct: 457 YAPEMHS 463


>gi|222149934|ref|YP_002550891.1| two component response regulator [Agrobacterium vitis S4]
 gi|221736916|gb|ACM37879.1| two component response regulator [Agrobacterium vitis S4]
          Length = 296

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 17/242 (7%)

Query: 31  FSIFFSIFIATVIFIANIFL-FYIGLTPFYGLEYILV---ENLSLVIISITISLLLGYIS 86
            SI   + I+T+   A   L  +  + P   L + +    +  + V I++     +G ++
Sbjct: 48  ASILLVLLISTLAGTAGCLLSLWRIIQPLRQLNHSIARYRQEGAPVTIAVKTKDEIGTVA 107

Query: 87  GS---ILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDI 136
            +   ++ EL  S   ++  +  D L+GL N    ++             + + ++ FD+
Sbjct: 108 QAVSALVTELDCSLKTLTLQANTDPLTGLANRRFILARGTEALDETRRSGDPMCLLLFDL 167

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK IND FGH  GDK +   +  +          GR+GGEEF     G++  +A  +A
Sbjct: 168 DHFKGINDAFGHETGDKALIAAAQTIRSNLRPNDLAGRIGGEEFCVLLPGTNLVQAQAIA 227

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255
             LR  +EN  I +       IT S G+A+   H       +   D ALY AK+ GRNR+
Sbjct: 228 ERLRTCLEN--ICLEPLAPGRITASFGLAQSADHFSTFQKFMAATDMALYRAKQHGRNRI 285

Query: 256 VC 257
            C
Sbjct: 286 HC 287


>gi|254506607|ref|ZP_05118748.1| sensor protein [Vibrio parahaemolyticus 16]
 gi|219550480|gb|EED27464.1| sensor protein [Vibrio parahaemolyticus 16]
          Length = 321

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 71/202 (35%), Positives = 102/202 (50%), Gaps = 16/202 (7%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
           V ++SLVI  +T       I+ + +  L  S  ++S LSR D L+ L N   + + L   
Sbjct: 123 VSHVSLVINDVT------DIAKNKIH-LMDSNQKLSDLSRTDGLTQLFNRRYWETCLMKE 175

Query: 126 NEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
            E         S+V FDID+FK++ND +GH VGD VI   +++L     T    GR GGE
Sbjct: 176 YESCKISGAVSSLVIFDIDHFKRVNDTYGHTVGDHVIRHTANELRKASRTSDVCGRYGGE 235

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TII 237
           EF     G+   +A      LRK IE+S +    G ++  TIS GI E    +      +
Sbjct: 236 EFTVLLPGTCANQALYFTERLRKKIESSIVEC-EGYNVKYTISLGICEISPYQSNHLNWL 294

Query: 238 YRADQALYVAKKSGRNRVVCFS 259
             AD+ALY +K++GRNR   F 
Sbjct: 295 EHADKALYFSKETGRNRSTVFD 316


>gi|207738894|ref|YP_002257287.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           IPO1609]
 gi|206592265|emb|CAQ59171.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           IPO1609]
          Length = 505

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 100/230 (43%), Gaps = 14/230 (6%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
           I     I ++ L    +   +      +  + L++ ++ I + + +     L+    +  
Sbjct: 267 IGDYPLIVSVGLATEDIYAEWRERARWIGGIVLLLDAVLIGMSIQF--AKQLRRRMEAEQ 324

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++ L+  D L+GL    A  S+L          ++ L+++  D+D FK  ND +GH  G
Sbjct: 325 KLAWLANTDGLTGLGTRRALDSALEAEWQRANRQHQPLAVLMIDVDEFKHYNDRYGHAAG 384

Query: 152 DKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D V+  ++  +   +     F GR GGEEF      +    A  +A  +R  +  +    
Sbjct: 385 DTVLRTVARCVNDSIRRPGDFAGRYGGEEFCVLLPNTDLPGAQRVAEAIRGTVLAAGEPN 444

Query: 211 SSGPSIHITISAGIAERCH----KEPISTIIYRADQALYVAKKSGRNRVV 256
           +      +T+S G+A         +  + +++RAD  LY AK  GRN V+
Sbjct: 445 AGSKHGRLTVSIGVAVHGGRSEAGDTPARLLHRADLQLYEAKSGGRNIVM 494


>gi|172062986|ref|YP_001810637.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia ambifaria MC40-6]
 gi|171995503|gb|ACB66421.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia ambifaria MC40-6]
          Length = 357

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+GL N       L +   +       LS++  D+D FK  N
Sbjct: 167 QQLLEANLELRRLTHSDGLTGLSNRRYLDEYLAAEWRRGARERSELSLLMIDVDNFKLYN 226

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD V+  ++  +    G +     R GGEEFA     +S   A +L   +R  
Sbjct: 227 DTYGHVSGDSVLKQVASTIERCLGQSGDLAARFGGEEFAVVMPATSPGAARLLGEKIRLA 286

Query: 203 IENSQINISSGPSIH-ITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IE+ ++  +   +   +TIS G A        P +++I  AD+ALY AK  G+NRV  
Sbjct: 287 IESLRLEHAHSSTGRYVTISIGGASIVPAAGVPTTSLIEAADRALYRAKHDGKNRVEI 344


>gi|107024091|ref|YP_622418.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
 gi|116691177|ref|YP_836800.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
 gi|105894280|gb|ABF77445.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
 gi|116649266|gb|ABK09907.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
          Length = 452

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 60/231 (25%), Positives = 107/231 (46%), Gaps = 12/231 (5%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96
           + IA +  + +  L  +  T  + + + +    S+    + + +L   ++  + ++LF +
Sbjct: 223 LAIAVLACLTDTTLNLLS-TNRFTVGWYVARVFSMFTPGVLVCVLAWEVT-MLYQQLFEA 280

Query: 97  YNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +  + + S  D L+G  N S F               E LS++  D+D FK  ND FGH 
Sbjct: 281 HATLIRSSARDGLTGAFNRSHFNDHFHTLFLQARRQGEPLSLLMVDVDRFKAYNDAFGHV 340

Query: 150 VGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            GD  +  +++ L      P   V R GGEEFA     +  + A ++A+++R  +    +
Sbjct: 341 KGDACLIAVANALAGAVRRPADIVARYGGEEFAIVLPNTGARGARVVADEVRDAVLRLDL 400

Query: 209 NISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
            +   P+  +++S G A     +      +I  AD ALY AK +GRNRVV 
Sbjct: 401 AMPDSPAGRVSVSVGCATVSADDLSTPDALIEAADAALYRAKDAGRNRVVV 451


>gi|241665425|ref|YP_002983784.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12D]
 gi|240867452|gb|ACS65112.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12D]
          Length = 902

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 11/182 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + E   +   I + +  D L+ L N   F + L             ++++F D+D FK+
Sbjct: 456 DITEKKRAEEVIWRQANFDTLTELPNRHMFYAKLRQEILHARQAATAVALLFIDLDRFKE 515

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD ++  ++ ++  +      V RLGG+EF        +  AA  A  +R 
Sbjct: 516 VNDTLGHDQGDVLLKEIARRISAIVRGTDTVARLGGDEFTIILPNLPDAGAA--APIIRS 573

Query: 202 IIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++      +  G  S+ +T S G+A      +   +++ RADQA++ AK +GRN+   F+
Sbjct: 574 LLARIATPVQLGEESVEVTASIGLALYPRDADNAESLLVRADQAMFAAKSAGRNQWSVFT 633

Query: 260 DI 261
             
Sbjct: 634 PA 635


>gi|238782742|ref|ZP_04626772.1| Predicted diguanylate cyclase [Yersinia bercovieri ATCC 43970]
 gi|238716402|gb|EEQ08384.1| Predicted diguanylate cyclase [Yersinia bercovieri ATCC 43970]
          Length = 366

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 69/255 (27%), Positives = 117/255 (45%), Gaps = 20/255 (7%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL-LLGY--- 84
           +  S+F   FI+T+    N   F +   P       L +  ++  I+ T+ L L+G+   
Sbjct: 108 LLLSLFTIFFISTIALSDNFIAFCLHTAPAALTVIFLDDFQNIFRITFTLMLPLIGFSLH 167

Query: 85  ---------ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSI 131
                     +  ++  L+    + S LS ID L+ L N     + L +   +      +
Sbjct: 168 HLMSRRSDDFTRKLVAHLYNEREKFSDLSMIDPLTSLYNRRGLENKLETLLAQSPGNHYV 227

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK  NDN+GH +GD+ +  ++  +     +   V R GGEEF       SE+ 
Sbjct: 228 LLLDIDHFKAYNDNYGHTMGDQALVRVAAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEY 287

Query: 192 AAILANDLRKIIENSQINISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           A+ LA  +R+ +    I       +   +T+SAGI+     +  S++   AD+ALY AKK
Sbjct: 288 ASQLAERVRQRVLGLDIPHVFNHKVSTTVTLSAGISPLQAYDLASSL-KAADEALYRAKK 346

Query: 250 SGRNRVVCFSDIENN 264
            GRN+V    +  +N
Sbjct: 347 DGRNKVAFAGEKLSN 361


>gi|217968967|ref|YP_002354201.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
 gi|217506294|gb|ACK53305.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
          Length = 814

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 17/194 (8%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
              + E     ++I +L+  D L+ L N       L            + +++  D+D+F
Sbjct: 360 NQDITERKRQEHQIHELAFFDPLTRLPNRRLMFDRLERALGSSARRRHQGALLLIDLDHF 419

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE---------Q 190
           K++ND+ GH  GD+++  ++ +L +         RLGG+EF        +          
Sbjct: 420 KELNDSHGHEAGDQLLMKVAARLGLSIREGDTAARLGGDEFVVILEDLEDVADELLHIKA 479

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
            A  +  +L +  +  +       S   + S GI+         + ++ RAD ALY AK 
Sbjct: 480 VADRIGRELGRPFQLQRGTAGETISYQCSASIGISAFGEPGVGAAELLRRADTALYQAKA 539

Query: 250 SGRNRVVCFSDIEN 263
           +GRN V  F  I  
Sbjct: 540 AGRNAVSFFDPIMQ 553


>gi|89094570|ref|ZP_01167508.1| sensory box/GGDEF family protein [Oceanospirillum sp. MED92]
 gi|89081169|gb|EAR60403.1| sensory box/GGDEF family protein [Oceanospirillum sp. MED92]
          Length = 888

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 88/180 (48%), Gaps = 10/180 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
             +     +  ++ + +  D L+GL N      +L +       + +++++++ DID FK
Sbjct: 433 QDISARKQAEAKLYKQANFDPLTGLPNRRRAHENLTAELQSAWKHKQQVAVLYLDIDNFK 492

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND FGH VGD+++  +S +LV        +  + G+EF   A  +SE +   LA  + 
Sbjct: 493 NVNDTFGHMVGDQLLQLVSARLVKCCKDLANICHISGDEFLVYARYASESDIRKLAQKIL 552

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++     +  G  I +++S GI+        ++ ++  AD ALY +K+ GRNR   F 
Sbjct: 553 DDVQT--PVLIEGKQIFVSVSIGISRYPEDNNDVTGLVKFADIALYESKREGRNRYSFFD 610


>gi|326795320|ref|YP_004313140.1| response regulator receiver modulated diguanylate cyclase
           [Marinomonas mediterranea MMB-1]
 gi|326546084|gb|ADZ91304.1| response regulator receiver modulated diguanylate cyclase
           [Marinomonas mediterranea MMB-1]
          Length = 304

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
             +  +L  +  ++  L+  D L+GL N   F  SL         Y+  LSI   DID+F
Sbjct: 126 ADMRAQLLQANRKLEALATTDFLTGLSNRRCFERSLDDEIAKAKRYDIPLSIAILDIDHF 185

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND++GH  GD V++ ++ +L         + R+GGEEFA     ++ ++A +     
Sbjct: 186 KRVNDSYGHDAGDLVLSSVAARLQAGARKGDVLARIGGEEFAICLPSTTLEQAIVACERY 245

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R ++ +  ++        IT+SAGIA           ++  AD+ LY AK+ GR+R+V 
Sbjct: 246 RIVLSSEPLSYGCD-EFTITLSAGIASMDVDHASKHDLMKAADELLYRAKQEGRDRIVY 303


>gi|261749980|ref|ZP_05993689.1| predicted protein [Brucella suis bv. 5 str. 513]
 gi|261739733|gb|EEY27659.1| predicted protein [Brucella suis bv. 5 str. 513]
          Length = 391

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS--- 130
           L++G I+     I  +   +  R++  +  D L+ L N       ++   S  + LS   
Sbjct: 197 LMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGKLLTQKKSARDGLSRDG 256

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSS 188
            ++  D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF      G+S
Sbjct: 257 FLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTS 316

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++  I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK
Sbjct: 317 KEQTDIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAK 375

Query: 249 KSGRNRVVCFSD 260
             G+NR   F +
Sbjct: 376 SKGKNRFEYFEE 387


>gi|291614471|ref|YP_003524628.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291584583|gb|ADE12241.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 807

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 80/194 (41%), Gaps = 16/194 (8%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           S   + E   +  +I +L+  D L+ L N    +  L           +K +++F D+D 
Sbjct: 354 SHVDITERKAAEEQIRRLAFHDPLTHLPNRQLLLDRLQQSLISTARNGKKGALLFIDLDN 413

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS------EQEA 192
           FK +ND  GH +GD ++   +++L         V R+GG+EF       S       ++ 
Sbjct: 414 FKTLNDTLGHAMGDMLLQQAAERLTSCMREGDTVARIGGDEFVVMLEELSGQAIEAAEQT 473

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSG 251
            ++   +   +  SQ       +   + S G        +    ++ +AD A+Y AKK+ 
Sbjct: 474 EVVGEKILAAL--SQPYHLDNHTFRSSGSIGATLFSGDHQEAEELLKQADIAMYQAKKAD 531

Query: 252 RNRVVCFSDIENNT 265
           RN +  F     + 
Sbjct: 532 RNTLRFFDHKMQDA 545


>gi|302879466|ref|YP_003848030.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Gallionella capsiferriformans ES-2]
 gi|302582255|gb|ADL56266.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Gallionella capsiferriformans ES-2]
          Length = 451

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 90/213 (42%), Gaps = 22/213 (10%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------- 125
           +IS   S+L        + E   +   I  L+  D L+ L N       L          
Sbjct: 237 VISENGSILHFVAIMQDITERKRTDETIRNLAFYDTLTKLPNRRLLNEHLNRAIASSRRN 296

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           N   +++F D+D FK +ND +GH +GD+++   + +L         V R GG+EF     
Sbjct: 297 NHYNALMFLDLDNFKPLNDTYGHVIGDQLLVEAAHRLKACVREIDTVARFGGDEFIILLS 356

Query: 186 GSSEQEAA------ILANDLRKIIEN--------SQINISSGPSIHITISAGIAERC-HK 230
             +E E+       I+A  +R I+           QI        H T S G++    H 
Sbjct: 357 ELTENESESTIQTGIIAEKIRDILSAPYFLKTTPHQIMPPHSIEHHCTASIGVSVFTGHS 416

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
               T I +AD+A+Y AK+ GRN VV   D+ +
Sbjct: 417 TTAETAILQADKAMYQAKERGRNLVVFNQDLHD 449


>gi|218531280|ref|YP_002422096.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium chloromethanicum CM4]
 gi|218523583|gb|ACK84168.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium chloromethanicum CM4]
          Length = 772

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 95/219 (43%), Gaps = 12/219 (5%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLL 113
           + PF     +   ++S   +       LGY    S +     +  RI+ L+  D L+GL 
Sbjct: 294 VVPFTRAGEMRWWSISGRPVYDETGTFLGYRGVCSDVTATKDAELRIAHLAHHDALTGLP 353

Query: 114 NHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
           N +    SL           L+++  D+D FK +ND +GHP GD ++  ++++L      
Sbjct: 354 NRAFMSESLHQALRDPDRACLAVLSLDLDGFKAVNDRYGHPGGDALLTSVAERLQNEVSG 413

Query: 169 PMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIA- 225
              V R GG+EF    +  +S  E   LA   R++IE+    +     S+ I +S GIA 
Sbjct: 414 GDIVARFGGDEFVVLNVAFTSPSEVEDLA---RRLIESLSTPVPLDNESVTIGVSIGIAF 470

Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
                     ++  AD ALY AK +GR     F    + 
Sbjct: 471 APTDGRTAEELLKNADAALYRAKTAGRGTFRFFEPEMDR 509


>gi|152992452|ref|YP_001358173.1| signal transduction response regulator [Sulfurovum sp. NBC37-1]
 gi|151424313|dbj|BAF71816.1| signal transduction response regulator [Sulfurovum sp. NBC37-1]
          Length = 755

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 86/174 (49%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQIND 144
           +++    N +  +S ID L+ L N       + S  ++       S++  DID FK IND
Sbjct: 584 RKMSTEKNALEAISMIDSLTELFNRRKIDRLIDSEVKRIRTKGCFSLILIDIDNFKNIND 643

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           ++GH VGD V+  ++  L          GR GGEEF      +S++EAA  A  +R  IE
Sbjct: 644 SYGHDVGDIVLKHIAQILKSSVRKKDSAGRWGGEEFLIVCPDTSKEEAAKFAERIRIAIE 703

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVC 257
           N          + +T S G+AE   +    T +I R D+ALY +K+ G+NRV  
Sbjct: 704 NESFE----KILKVTASVGVAEYNRENIGDTSLIRRLDKALYDSKRDGKNRVTV 753


>gi|117618610|ref|YP_855243.1| GGDEF family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117560017|gb|ABK36965.1| GGDEF family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 321

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 66/172 (38%), Positives = 92/172 (53%), Gaps = 5/172 (2%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           +KEL  + N   +L+  D L+ LLN  AF   I SL    +  S++  DID FK  ND +
Sbjct: 146 IKELREALNETRKLANEDALTSLLNRRAFDLEIESLIRSKQPFSLILSDIDRFKSFNDEY 205

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH +GD+V+   S +L       +   RLGGEEFA      S   +  +A  LR+ IE  
Sbjct: 206 GHLLGDQVLRAFSKRLRETCKEGVTAYRLGGEEFALLVPMRSLALSRQMAESLRRAIEKM 265

Query: 207 QI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            I +  SG  I HIT S G+ E   +E   +++ R D+ LY AK+ GRNRV+
Sbjct: 266 SILDRKSGRRIDHITASFGVGEYSGQETGDSLVERTDKLLYKAKELGRNRVM 317


>gi|78485406|ref|YP_391331.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78363692|gb|ABB41657.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2]
          Length = 566

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 78/264 (29%), Positives = 120/264 (45%), Gaps = 38/264 (14%)

Query: 26  TFMIYFSIFFSIFIATVIFI--------ANIFLF---------------YIGLTPFYGLE 62
            F I  S+ FS+F+ T+  +        A  FL                 + + P+  L 
Sbjct: 306 MFAIGMSVLFSLFVFTIALLSYLKGNKTARFFLLGTTAGLIGTSVTALTVMAIIPYSHLG 365

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y  V+   L I SI +S  L     S  K+   +       +  D L+ + N  AF    
Sbjct: 366 YQAVD-YGLAIDSILLSFALVDRVKSTEKDKLQAEAS----ANTDALTNVANRRAFNHFC 420

Query: 123 GS--------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
                     Y  KL  +  DID+FK+IND+FGH VGD V+  ++  L     +   + R
Sbjct: 421 EHLAFDSQNFYQGKLVALMLDIDFFKEINDSFGHSVGDIVLQKVASLLRNNTKSADKIFR 480

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PI 233
           +GGEEF    L +  ++A  +A  +R  IE  +       +I IT+S G+A+   ++  +
Sbjct: 481 MGGEEFLVLLLDTELEDAQKVAERIRAAIEEME-THKENKTISITVSIGMADFLPEDVSL 539

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
            + I  AD+ALY AK+SGRN+VV 
Sbjct: 540 LSTIQLADKALYEAKRSGRNKVVL 563


>gi|95931335|ref|ZP_01314049.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95132606|gb|EAT14291.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 635

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 11/186 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           + E   +  +I QL+  D L+GL N       L         ++  L+++F D+D FK++
Sbjct: 191 ISERKQAEQKIHQLAYYDTLTGLPNRVLLQDRLIHAIADARRFSHYLAVMFIDLDQFKKV 250

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH VGD ++   + +L           RLGG+EF     G   ++ + L +  RK+
Sbjct: 251 NDTLGHSVGDLLLKDAARRLRSCLRDNDTAARLGGDEFVVILSG--FKQISNLPHIARKV 308

Query: 203 IE-NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++  SQ    +   + ++ S GI+      +    ++  AD A+Y AK    N    FS+
Sbjct: 309 LDVLSQPYFLAERELVVSASLGISVYPQDGDNAELLMRNADMAMYAAKYDHGNGYCFFSE 368

Query: 261 IENNTC 266
             N   
Sbjct: 369 EMNKNA 374


>gi|328952970|ref|YP_004370304.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453294|gb|AEB09123.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfobacca
           acetoxidans DSM 11109]
          Length = 864

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 52/171 (30%), Positives = 74/171 (43%), Gaps = 8/171 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHP 149
              +   +  D L+GL N      +L     +       L +V  DID+FKQ ND  GH 
Sbjct: 693 RETLRHQAIRDPLTGLFNRRYLQETLDREIHRAQRKNANLGVVMLDIDHFKQFNDLNGHE 752

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GDK++A     L           R GGEEF       +       A  +R+  ++  ++
Sbjct: 753 AGDKLLAVFGRYLKNSIRAEDIACRYGGEEFTLIIPEITSSFLLERAEAIREGTKDLVVH 812

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                   ITIS G++    H      ++ +AD+ALY AK SGRNRVV  S
Sbjct: 813 HQGRVLGTITISMGLSFYPEHGNTGEKLLAKADEALYRAKNSGRNRVVMAS 863


>gi|89093269|ref|ZP_01166219.1| Putative diguanylate cyclase (GGDEF domain) [Oceanospirillum sp.
           MED92]
 gi|89082565|gb|EAR61787.1| Putative diguanylate cyclase (GGDEF domain) [Oceanospirillum sp.
           MED92]
          Length = 577

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 112/243 (46%), Gaps = 21/243 (8%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS 86
           + +  ++F  I      F  +  + Y  +  F+ +EY       ++I ++  +L L Y  
Sbjct: 344 YFLGAAVFAMISAVITAFTVSGIVEYKAI-GFHAVEY------GMLIEAVLFALALAY-Q 395

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
             I +E  ++     QL+  D L+GL N   F   +         ++ +L ++  DID+F
Sbjct: 396 FRINQEEKVAAQ---QLADRDQLTGLYNRRGFDKVMEPVFGNAYRHHRELCLLVLDIDHF 452

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND  GH  GD V+  L+  L         + R GGEEF      ++  EA  LA  L
Sbjct: 453 KAINDRHGHGYGDLVLTDLAKVLQHELRAGDLIARWGGEEFLLLLPETNHMEAVTLAERL 512

Query: 200 RKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + I N ++    G   H T+S GIAE +        ++  AD+ LY AK++GRN+  C+
Sbjct: 513 IRNISNREVE-GDGVQEHYTVSIGIAELKPPIVSFKQLLVEADKHLYRAKETGRNK-ACY 570

Query: 259 SDI 261
             +
Sbjct: 571 QQV 573


>gi|89092239|ref|ZP_01165193.1| hypothetical protein MED92_05488 [Oceanospirillum sp. MED92]
 gi|89083327|gb|EAR62545.1| hypothetical protein MED92_05488 [Oceanospirillum sp. MED92]
          Length = 955

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + +  L  +  R+  L+  D L+ L N   F   L            K++++F D+D FK
Sbjct: 511 ADITSLKETEARLDHLAHYDALTELPNRLLFRERLIHSLLMSERKKTKVAVLFLDLDRFK 570

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
            IND  GH VGD ++A ++ +L  V      VGR+ G+EF           +   +   +
Sbjct: 571 NINDTLGHGVGDILLAEIASRLRHVVRMGDTVGRISGDEFCLILEDIQDVTDVVPIVEKI 630

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
             +   SQ    +   + I+ S G+A           ++  +D A+Y AK++GRN    +
Sbjct: 631 LSVF--SQTIQINSHMLQISASIGVAISPDNSNDADALLSFSDSAMYEAKEAGRNTYKFY 688

Query: 259 SDIENNTC 266
           +       
Sbjct: 689 TAEMTQQA 696


>gi|46202079|ref|ZP_00053801.2| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 440

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 82/173 (47%), Gaps = 9/173 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           E  +    + QL+  D L+   N   F       I   G Y   +S++  D+D+FK IND
Sbjct: 264 ERAVVQKELIQLATTDFLTEACNRRHFMQSTGAEIQRAGRYGRPMSLLMIDLDHFKHIND 323

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+ +         +      +GR+GGEEFA A   ++   A ++A  LR  + 
Sbjct: 324 ERGHAAGDEALKAFVVMARDLLRDQDIIGRMGGEEFAIALPETAMNPALVVAERLRIRLA 383

Query: 205 NSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
             Q+ +  G  I ++ S G+AE      E +   + RAD ALY AK  GRNRV
Sbjct: 384 GLQVPVGGGEPIKLSASFGVAECKVGAGEGLEACLSRADAALYRAKALGRNRV 436


>gi|294667325|ref|ZP_06732544.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292602877|gb|EFF46309.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 569

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 79/170 (46%), Gaps = 8/170 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNF 146
                 + + S  D L+GL N      SL             LS++  D+D+FKQ ND+ 
Sbjct: 389 LRLRESLRRQSIRDALTGLYNRRYLEESLSHELARCARRGLPLSVLMLDVDHFKQFNDSQ 448

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD ++A + + L+          R GGEEF      +  +EA  +A  +R  I   
Sbjct: 449 GHAGGDLLLAAVGELLLTRLRAEDVACRYGGEEFTVLLPEADGEEAMRVAEQIRGYIAAL 508

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
            ++  +     +T S G+A      E  +++I +AD ALY AK +GRNRV
Sbjct: 509 AVSDGARALPKVTASIGVASFPVDGEQGASLIQKADAALYRAKHAGRNRV 558


>gi|323529554|ref|YP_004231706.1| diguanylate cyclase [Burkholderia sp. CCGE1001]
 gi|323386556|gb|ADX58646.1| diguanylate cyclase [Burkholderia sp. CCGE1001]
          Length = 607

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 72/272 (26%), Positives = 119/272 (43%), Gaps = 25/272 (9%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLT-PFYGLEYI---LVEN 68
           L   K LE       ++  SI   + I +V+ +    LF   LT P + L Y    L   
Sbjct: 305 LGLGKPLEDVLSGAHLLGGSIVRMVLIFSVLAVLLAILFARALTKPLHMLAYAATHLFAE 364

Query: 69  LSLVIISITISLLLGYISG---SILKE-------LFISYNRISQLSRIDCLSGLLNHSAF 118
            ++  + +  +  +G ++     + +E       L +    +  L+  D L+GL N   F
Sbjct: 365 HAMETLPLRRTDEIGVLARCFDRLRREIRSQMDALHVKQRELVHLATHDVLTGLPNRMLF 424

Query: 119 ISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           +  L           + L+++F D+D FKQIND FGH VGDKV+  ++ +L  V      
Sbjct: 425 MEKLERAIQEATRRRQGLAVLFVDLDRFKQINDQFGHSVGDKVLVAVALRLKQVLHAADV 484

Query: 172 VGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
           V RLGG+EF     G    EAA  +A+ +   +      +  G  + +  S GI++    
Sbjct: 485 VARLGGDEFIVLIEGPRSAEAAPGIASRIMTTLNEEI--VMDGQGMTVGASIGISQFPDD 542

Query: 231 E-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                 ++  AD A+Y AK  GR   + + D+
Sbjct: 543 SGTAEELLLNADAAMYAAKSGGRCAYLRYHDV 574


>gi|262165779|ref|ZP_06033516.1| GGDEF domain protein [Vibrio mimicus VM223]
 gi|262025495|gb|EEY44163.1| GGDEF domain protein [Vibrio mimicus VM223]
          Length = 352

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 71/264 (26%), Positives = 116/264 (43%), Gaps = 30/264 (11%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           +W C       F P  F I+ S  F+   +++  I              G+ Y  ++N  
Sbjct: 98  VWSC-------FVPILFYIFTSARFAFLTSSLFLILQ-----------SGIVYWQLQNEP 139

Query: 71  LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSY 125
           L+  S+ + L   YI   ++  ++    R     +  L+  D L+   N  +  +S   +
Sbjct: 140 LISWSVLLHLSFAYIGIWVVSHVYEQNRRKIENSLLYLASRDPLTSAHNRLSLTTSFQHF 199

Query: 126 NE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            +      LS++  D+D+FK IND FGH  GDKV+   +  L  V G    + R+GGEEF
Sbjct: 200 EQFNDQTTLSLLVIDLDFFKSINDQFGHDTGDKVLIETTRLLAQVVGDNN-LYRIGGEEF 258

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                  S ++A  +   LR II            + +TIS G+ E    + ++ ++  A
Sbjct: 259 CVTLFDQSLEQAERVCERLRAIISQHIFAFGD-KRVQVTISIGVCEYQPGDQLNDLLKFA 317

Query: 241 DQALYVAKKSGRNRVVCFSDIENN 264
           D  LY AKK+GRN+V  F   +  
Sbjct: 318 DIELYRAKKAGRNQVRLFKHAQTQ 341


>gi|115358199|ref|YP_775337.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
 gi|115283487|gb|ABI89003.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia ambifaria AMMD]
          Length = 357

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+GL N       L +   +       LS++  D+D FK  N
Sbjct: 167 QQLLEANLELRRLTHSDGLTGLSNRRYLDEYLAAEWRRGARERSELSLLMIDVDNFKLYN 226

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD V+  ++  +    G +     R GGEEFA     +S   A +L   +R  
Sbjct: 227 DTYGHVSGDSVLKQVASTIERCLGQSGDLAARFGGEEFAVVMPATSPGAARLLGEKIRLA 286

Query: 203 IENSQINISSGPSIH-ITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IE  ++  +   +   +TIS G A        P +++I  AD+ALY AK  G+NRV  
Sbjct: 287 IEGLRLEHAHSSTGRYVTISIGGASIVPAAGVPTTSLIEAADRALYRAKHDGKNRVEI 344


>gi|304408638|ref|ZP_07390259.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS183]
 gi|307305467|ref|ZP_07585215.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica BA175]
 gi|304352459|gb|EFM16856.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS183]
 gi|306911770|gb|EFN42195.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica BA175]
          Length = 749

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 9/184 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQ 141
           S + E   +   I   +  D L+GL N +A    + S+          S +  D+D FKQ
Sbjct: 299 SDISERKKAAQLIKYQANNDSLTGLANRNALFKLIQSFITSDSLTPGFSFMLMDLDNFKQ 358

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND  GH  GD ++  +  Q+       M   RLGG+EFA    G  +++E A LA  + 
Sbjct: 359 VNDTHGHDKGDALLVQVVRQICECLNDTMVFARLGGDEFALLLPGIVNQKELAQLAETIN 418

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           K +    + ++ G  ++ ++S GIA        +  ++  ADQA+Y++K +GRNR   F+
Sbjct: 419 KHVAKRYV-LADGKGVYSSVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFT 477

Query: 260 DIEN 263
           +   
Sbjct: 478 EQMQ 481


>gi|153824663|ref|ZP_01977330.1| ggdef family protein [Vibrio cholerae MZO-2]
 gi|149741619|gb|EDM55648.1| ggdef family protein [Vibrio cholerae MZO-2]
          Length = 338

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 21/220 (9%)

Query: 58  FYGLEYILVENLSLVIISITISLLLG----------YISGSI------LKELFISYNRIS 101
           F  LE +  +NLS+  +   +  L+           +++  +      +  L     ++ 
Sbjct: 117 FKDLERVEQDNLSIEEVMTVVRRLVSDSKDIRHSTNFLNNQLNAATLEISRLKEQLAKVQ 176

Query: 102 QLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           + +  D LSGL N  AF     +L    +++S++  DID+FK +NDN+GH  GD++I  +
Sbjct: 177 KDALFDSLSGLYNRRAFDGDMFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAI 236

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217
           + +L  +    +   R GGEEFA  A   S + A   A  +R+ IE   + +  SG S+ 
Sbjct: 237 AKRLQSLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVG 296

Query: 218 -ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            IT S G+ E+   + + ++I RAD  LY AK  GRNRV+
Sbjct: 297 SITASFGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 336


>gi|237745833|ref|ZP_04576313.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacter formigenes HOxBLS]
 gi|229377184|gb|EEO27275.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacter formigenes HOxBLS]
          Length = 969

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 52/211 (24%), Positives = 87/211 (41%), Gaps = 12/211 (5%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL- 122
           I    +S  +I     L + +I    + E   +   + + +  D ++GL N   F   L 
Sbjct: 499 IFPVEISSRVIEAEGRLFIQFII-RDISEKKKAEETVWRHANFDQITGLANRRMFSERLF 557

Query: 123 ------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                       ++++F D+D+FK +ND  GH  GD ++    D+L         V RLG
Sbjct: 558 FETRKAQRTGASVALMFLDLDHFKDVNDTLGHGAGDTLLKEAGDRLTRCVRETDTVARLG 617

Query: 177 GEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPIS 234
           G+EF       +  ++   +A ++    E S+     G  +HI+ S GI           
Sbjct: 618 GDEFTVILTDLADFRDVERVAQNILD--ELSEPFTLEGQPVHISASIGITFFPEDAADTH 675

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            ++  ADQA+Y AK  G NR   F+      
Sbjct: 676 DLMKNADQAMYAAKSMGGNRYHYFTQSMQEA 706


>gi|39997411|ref|NP_953362.1| response regulator [Geobacter sulfurreducens PCA]
 gi|39984302|gb|AAR35689.1| response regulator [Geobacter sulfurreducens PCA]
 gi|298506348|gb|ADI85071.1| response receiver-modulated diguanylate cyclase [Geobacter
           sulfurreducens KN400]
          Length = 301

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128
           +   + +G  +  +   L  +   ++  +  D L+G++N  A I  L     +       
Sbjct: 111 LRARIQVGRRTVELHSRLQETQEALNHQATHDPLTGVMNRRAIIDHLEKELSRVKRDGGS 170

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LSI   DID+FK++ND +GH  GD+V+      L  +      +GRLGGEEF   A G+ 
Sbjct: 171 LSIGILDIDHFKRVNDRYGHQTGDEVLCGCVGVLGGLLRDYDLLGRLGGEEFLVVAPGTG 230

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
             +   L   LR  I +++    + P + +T+S G+A       +  ++  AD ALY AK
Sbjct: 231 -DDCNHLYERLRAAIASTKFTSRAKP-VSVTVSIGVAACDGTAGLDELLAAADDALYRAK 288

Query: 249 KSGRNRVV 256
           +SGR+RVV
Sbjct: 289 RSGRDRVV 296


>gi|330939046|gb|EGH42502.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 748

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
            S L+E       ++ ++  D L+ L N +  ++ L +         E+ +++F D+D F
Sbjct: 300 QSRLEERERISEELTYIAFHDELTSLFNRAYLMNELTTAFEIRDPRYERATVLFLDLDGF 359

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
           K +ND+ GH  GDK++  ++++L     +   + R+GG+EFA   +G  + + A  +A  
Sbjct: 360 KVVNDSMGHLAGDKLLKAVANRLQTCVRSNDVLARIGGDEFAILLMGKDQPETAVKMAER 419

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           +   +  + I I +   I I+ S GI            ++  AD A+Y AKK GR R   
Sbjct: 420 IVSQLHTA-IQIEN-QDIFISCSIGIVTAGDSHTKPEELLRDADVAMYSAKKQGRGRWSI 477

Query: 258 FSDIENNTC 266
           F+       
Sbjct: 478 FNTSMREAA 486


>gi|323977864|gb|EGB72950.1| diguanylate cyclase domain-containing protein [Escherichia coli
           TW10509]
          Length = 564

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 97/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 362 LTLLWALFTSMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTHLYNRGALFEKARQLAK 421

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               +    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRALDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 482 CVILPGASLTQAAEVAERIRLKLNEKEMLIAKSSTIRISASLGVSSSEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 542 LADRRLYLAKQAGRNRV-FASD 562


>gi|302185635|ref|ZP_07262308.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 796

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 86/175 (49%), Gaps = 10/175 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +L      +  LS  D L+G  N   F   +         +   LSI+  DID+FK
Sbjct: 620 SDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSIIMLDIDHFK 679

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +A  LA  LR
Sbjct: 680 RINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRGAQAYQLALSLR 739

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              E  +  +  G    +T S GIA     E I  ++ RAD  +Y AK++GR+RV
Sbjct: 740 ---EELRKQVIEGVDQVVTGSFGIASWREGEGIDAMLLRADSGVYAAKQAGRDRV 791


>gi|298247691|ref|ZP_06971496.1| diguanylate cyclase [Ktedonobacter racemifer DSM 44963]
 gi|297550350|gb|EFH84216.1| diguanylate cyclase [Ktedonobacter racemifer DSM 44963]
          Length = 553

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 57/196 (29%), Positives = 97/196 (49%), Gaps = 10/196 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---- 125
           S++I+ I   +L  +   ++ ++L     ++  L+  D L+G+ NH   ++ L       
Sbjct: 344 SILIVLILRQVLATHELNNLKRDLQEKNAQLDTLAASDPLTGVSNHRTLVTRLDEEVARA 403

Query: 126 ---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                  S++F DID+FK IND +GH  GD V+  ++ ++  +  +   +GR GGEEF A
Sbjct: 404 KAQQAPCSVLFMDIDHFKAINDQYGHSTGDLVLCQVARRVASILRSEDCLGRWGGEEFLA 463

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRAD 241
              G     A  +A  +R  +   Q  ++S  ++ +T S GIA           +I  AD
Sbjct: 464 VLPGQDLCSAYEVAEMIRMQV--LQQVVASEKNLRVTCSLGIATYPQTAASRDGLINAAD 521

Query: 242 QALYVAKKSGRNRVVC 257
           QA+Y AK+ GRN+   
Sbjct: 522 QAMYEAKRLGRNQTCL 537


>gi|90022028|ref|YP_527855.1| response regulator receiver modulated diguanylate cyclase
           [Saccharophagus degradans 2-40]
 gi|89951628|gb|ABD81643.1| response regulator receiver modulated diguanylate cyclase
           [Saccharophagus degradans 2-40]
          Length = 434

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 94/205 (45%), Gaps = 13/205 (6%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G +  LV+ +S +IIS  I  +       +  +L      +  LS+ D L+ L N   F 
Sbjct: 96  GGDDYLVKPVSQMIISAKIRAM--ERITDMRNQLATLNRELKVLSQRDGLTHLYNRRTFE 153

Query: 120 SSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMF 171
                  +        L+++  DID+FKQ ND +GH  GD+ I  +S  L          
Sbjct: 154 ELAEKQWKIATRNKAPLAVLLLDIDHFKQYNDYYGHQQGDRCIQTISSVLAKCVTRPDDL 213

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAE--RC 228
           +GR GGEEF      + E  A  +A  +RK +E  QI   + PS  ++T+S G A     
Sbjct: 214 IGRYGGEEFIILLPNTPENGAHYIAEQIRKSVERLQIKHRASPSNTYVTVSIGGAALNYT 273

Query: 229 HKEPISTIIYRADQALYVAKKSGRN 253
                +  +  AD+ALY AK SGRN
Sbjct: 274 TGTTWAHQVGLADKALYTAKASGRN 298


>gi|148545487|ref|YP_001265589.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas putida
           F1]
 gi|148509545|gb|ABQ76405.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida F1]
          Length = 342

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 9/178 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
              + E       + +L+  D L+   N   F                 L+ +  DID F
Sbjct: 164 AEDITEKKQLEGELQRLATTDVLTQSSNRRHFFECAQQAFDSAREDGTPLAFLLLDIDDF 223

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND++GH  GD+V+  ++D    V       GR+GGEEFAA   G + Q A  +A  L
Sbjct: 224 KRINDSYGHQEGDQVLQHIADSGKAVLRRGDLFGRIGGEEFAAVFPGCNAQVAEQIAERL 283

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
           ++ I++   +     +  +T+S G+ E   ++  + ++  RAD A+Y AK+ G+N++V
Sbjct: 284 QRQIQHLSFSHGQ-QTYGVTVSQGLTELTDEDVALDSLYARADAAMYQAKRQGKNQIV 340


>gi|264678089|ref|YP_003277996.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262208602|gb|ACY32700.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 609

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 5/181 (2%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDN 145
            +  L       + L+  D L+GL N  A   +L       + L++ F D+D FKQ+ND 
Sbjct: 428 DIDALKRGEQAANHLANHDALTGLANRRALEETLNQELADGQMLAVCFMDLDGFKQVNDT 487

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIE 204
            GH  GD+V+  ++ +L         V RLGG+EF     G  +  EA  +     + + 
Sbjct: 488 QGHDAGDEVLRVVAARLTAQARAGDCVARLGGDEFVVLLSGLHTPGEAMSVMKRCMEAVR 547

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
              I ++ G  + +  S GI+        + ++  AD+A+Y AK +G+ R+V  SD+  +
Sbjct: 548 Q-PIALNGGVMVQVGSSIGISISTADSSSANLMQSADEAMYSAKHAGKGRIVQHSDLSQD 606

Query: 265 T 265
           +
Sbjct: 607 S 607


>gi|254413714|ref|ZP_05027483.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196179311|gb|EDX74306.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 330

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 64/190 (33%), Positives = 96/190 (50%), Gaps = 10/190 (5%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132
           +L G+ S    ++L  + + +S L+  D L+ L N  A        I +  +Y   LS++
Sbjct: 138 ILAGWRSVQFYQKLLQTNDVLSTLALADPLTELNNRRAMEWELPRQIQNARTYITDLSVI 197

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK +ND +GH VGD+V+  LS +L         + R GGEEF      +S +EA
Sbjct: 198 MMDVDHFKSVNDTYGHQVGDRVLQLLSTRLQHNLRLQDTLFRYGGEEFLVVLNQTSGEEA 257

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKS 250
            I+A  LR  I     N+    +I ITIS GIA     +     +++ RAD  L  AK  
Sbjct: 258 KIVAKRLRYQINEQPFNVDGTIAIEITISVGIASLKASDDHKGESLVKRADHNLLRAKAK 317

Query: 251 GRNRVVCFSD 260
           G N+V  +SD
Sbjct: 318 GTNQV-LYSD 326


>gi|120613403|ref|YP_973081.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
 gi|120591867|gb|ABM35307.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
          Length = 403

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 65/237 (27%), Positives = 117/237 (49%), Gaps = 16/237 (6%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGL-EYILVENLSLVIISITI-SLLLGYISGSILKEL 93
            I++  V+ +        G  P  GL E    ++ + +   IT+ +   G+I   + ++ 
Sbjct: 154 GIWLQAVVLVVRALAAITGHMPASGLLEANFWQHATFLATFITVQASSFGFIF--MARDR 211

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNF 146
             + N   +++  D L+ + N  A I++L           E LS++  DID+FK+IND  
Sbjct: 212 ADAAN--ERMAARDPLTDVPNRRATIAALDRCVAQAVRSGEPLSVMMLDIDHFKRINDGL 269

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+V+  + D L     +   +GR GGEEF      +    A +LA +LR  +E +
Sbjct: 270 GHLAGDQVLCGVVDVLGERLRSQDLIGRYGGEEFLVLLPRTPLAGAQVLAGELRAAVEQA 329

Query: 207 QINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                +G ++ +T+S G+A       +    ++  AD+A+Y AK+SGRN+V   +++
Sbjct: 330 HFEF-AGRTVPVTLSIGVAGGVLEPGDRWDGLVAAADEAMYRAKRSGRNQVATTAEV 385


>gi|118579162|ref|YP_900412.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Pelobacter propionicus DSM
           2379]
 gi|118501872|gb|ABK98354.1| diguanylate cyclase/phosphodiesterase [Pelobacter propionicus DSM
           2379]
          Length = 1238

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 12/189 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + +        RI  ++  D L+ L N    +  L             ++++F D+D+FK
Sbjct: 789 TDISAQKSQEQRIQHIAHHDALTNLPNRLLCMERLILALQQAHRNGRHVAVIFIDLDHFK 848

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND+ GH VGD V+   +++L +       V RLGG+EF      +  +++  +   ++
Sbjct: 849 NINDSLGHHVGDCVLVTAANRLSMGVRDGDTVSRLGGDEFVIIL--ADIEDSHQIEEIMK 906

Query: 201 KIIENS--QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
             +     Q   + G  +H + S GI+          T++  AD A+Y AK+ GRN    
Sbjct: 907 HRLLPLMRQPYDAGGYELHCSCSIGISIFPEDGLDKDTLLRNADTAMYRAKEVGRNNYHF 966

Query: 258 FSDIENNTC 266
           +++  N+  
Sbjct: 967 YTEELNSRA 975


>gi|325917835|ref|ZP_08180014.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325535946|gb|EGD07763.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 988

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 33/232 (14%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE------------------- 92
           ++   P++     L+  + L I ++    LL + +  +L+                    
Sbjct: 744 FVLRPPWWRGIPALIAYVLLAIAAVIA--LLRWRTAKLLRRKRELEQLVAERTAELEQDK 801

Query: 93  --LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
             L  + + ++  +  D L+GLLN +  +++L        +    L++V  D+D+FK +N
Sbjct: 802 RDLESARSELALKATHDELTGLLNRAGILAALRDMLRNADATARPLAVVLIDLDHFKLVN 861

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD V+A +  +L  +      +GR GGEE  A   G + +    L    R I 
Sbjct: 862 DQHGHLAGDAVLAGVGRRLDTLVRGDDRIGRYGGEELLALLPGLTHEATHRLDALHRGIC 921

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  I    G  +H+T S G+A     E +  ++ RAD ALY AK+SGRNR+
Sbjct: 922 GDYPI---DGGWLHVTCSIGVAWFAPGETLEQLLARADTALYSAKRSGRNRI 970


>gi|265989585|ref|ZP_06102142.1| predicted protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|263000254|gb|EEZ12944.1| predicted protein [Brucella melitensis bv. 1 str. Rev.1]
          Length = 391

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS--- 130
           L++G I+     I  +   +  R++  +  D L+ L N       ++   S  + LS   
Sbjct: 197 LMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGKLLTQKKSARDGLSRDG 256

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSS 188
            ++  D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF      G+S
Sbjct: 257 FLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTS 316

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++  I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK
Sbjct: 317 KEQTDIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAK 375

Query: 249 KSGRNRVVCFSD 260
             G+NR   F +
Sbjct: 376 SKGKNRFEYFEE 387


>gi|255020257|ref|ZP_05292326.1| response regulator/GGDEF domain protein [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970399|gb|EET27892.1| response regulator/GGDEF domain protein [Acidithiobacillus caldus
           ATCC 51756]
          Length = 635

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 9/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L      + Q +  D L+ L N       L         + + L+++  D+D FKQIND 
Sbjct: 453 LVEVNRDLRQAALTDPLTALRNRRYVTERLAQEWAAAQRHGKTLAVLLLDLDNFKQINDE 512

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD V+  L+  L         + R+GG+EF      ++   A  +A  +R+ +  
Sbjct: 513 LGHHSGDAVLRQLAATLQAHARMQDVLCRVGGDEFLVICPETTLDGARTMAERIRQALLE 572

Query: 206 SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            ++  +      +++S GIA    + +    ++  AD+ALY AK  GRNRV  +
Sbjct: 573 LRVPGAESAD-GLSLSIGIATNGAEVDSPEALLQAADRALYRAKSHGRNRVEVY 625


>gi|229099841|ref|ZP_04230765.1| GGDEF domain protein [Bacillus cereus Rock3-29]
 gi|228683587|gb|EEL37541.1| GGDEF domain protein [Bacillus cereus Rock3-29]
          Length = 351

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 116/242 (47%), Gaps = 15/242 (6%)

Query: 27  FMIYFSIFFSIFIATV---IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           + I  S    IFIA +   I +  I+L    L+      YIL  ++S+V++ +  S+  G
Sbjct: 108 YTIVLSGIGVIFIARMQISIMLKLIWLHVYCLSILVVPMYILFNDISVVVLYLISSITTG 167

Query: 84  YI---SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVF 133
           YI   S + + +    +  + Q + ID L+GL N   F   +  +       N+ L ++ 
Sbjct: 168 YITFVSANYVLQSNELFQTMKQYATIDALTGLGNVRQFDLEMNHHIGNKHMENDSLCLLL 227

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D D+FK +ND +GHP GD+V+  +   L  +   P  V R GGEEFA            
Sbjct: 228 IDTDHFKYVNDTYGHPAGDEVLKQIGCILRGISTFPDLVFRKGGEEFALLIPQRGLSYGI 287

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            L   +R  +E     +  G  I IT+S GI+E    +    +I  AD ALY +K++GRN
Sbjct: 288 HLGEQIRIAVEKHSFQLLDGTKIKITVSVGISEYKGSQ--EQLIQAADDALYYSKRNGRN 345

Query: 254 RV 255
           +V
Sbjct: 346 QV 347


>gi|209551481|ref|YP_002283398.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537237|gb|ACI57172.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 537

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 66/210 (31%), Positives = 104/210 (49%), Gaps = 15/210 (7%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYN----RISQLSRIDCLSGLLNHS 116
           L  IL     L+I++ T+ ++L      ++  L          +   ++ D L+GL N  
Sbjct: 305 LTRILALCAGLLILA-TLVMVLAARGLRLIDRLSRDRETLVGELRNAAQTDLLTGLYNRR 363

Query: 117 AF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            F       ++     +  +S+V FD+D+FK+IND  GH  GD V+  ++      F + 
Sbjct: 364 GFEFAASALLTQAEHGSRWISVVLFDLDHFKKINDINGHDAGDAVLRHVAGVARQNFRSF 423

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
             + R GGEEF A    S+  +AAI+A  +R  IE ++I + SG  + +T S G A R +
Sbjct: 424 DLLVRHGGEEFLALLPDSTPDDAAIVAERVRLAIEAAEIPLESGEVLKVTASFGCAGRAN 483

Query: 230 ---KEPISTIIYRADQALYVAKKSGRNRVV 256
                    ++ RAD +LY AK SGRN VV
Sbjct: 484 EAANRNFEDLVKRADLSLYAAKASGRNCVV 513


>gi|189424842|ref|YP_001952019.1| diguanylate cyclase [Geobacter lovleyi SZ]
 gi|189421101|gb|ACD95499.1| diguanylate cyclase [Geobacter lovleyi SZ]
          Length = 253

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 92/191 (48%), Gaps = 8/191 (4%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA----FISSLGSYNE---KLS 130
           ++  L   +  +++ +   +  +  ++  D L+G LN  A        +  Y +    L+
Sbjct: 63  LAFPLTLAAHIVVRPIKSHFETLRDMANYDQLTGCLNRHAANMILRHEIRRYADQELPLA 122

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  DID+FK++ND FGH  GD+++   +            + R GGEEF     G+ E+
Sbjct: 123 VLMADIDHFKKVNDTFGHTAGDQILKKFAQVAGSALRRCDMLCRWGGEEFLVLLRGTVEE 182

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           EA  +A+ +R+ +E+          + +T+S G A          ++  AD+ALY AK +
Sbjct: 183 EAFQIADRIRRRVESITFPPYDACGL-LTVSIGSAALLPGGNFEQLVAEADKALYRAKHA 241

Query: 251 GRNRVVCFSDI 261
           GRNRV   SD 
Sbjct: 242 GRNRVATISDE 252


>gi|332341747|gb|AEE55081.1| diguanylate cyclase AdrA [Escherichia coli UMNK88]
          Length = 371

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRN    
Sbjct: 322 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNCTEV 369


>gi|262368213|ref|ZP_06061542.1| response regulator [Acinetobacter johnsonii SH046]
 gi|262315891|gb|EEY96929.1| response regulator [Acinetobacter johnsonii SH046]
          Length = 476

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 121/247 (48%), Gaps = 14/247 (5%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           P   +I+ ++ +++F  ++I     F+ Y  LT +Y       +N     IS+ I L + 
Sbjct: 233 PLAGLIWAALSYNLFYVSIINSLVCFVTYHSLTTYYISRT--ADNFLATSISVRIGLCML 290

Query: 84  YISGSIL----KELFISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYN--EKLSIVFF 134
            I+  +L    +     Y  +  L+  D L+ + N   F     +L   N  + +SI+  
Sbjct: 291 MIAPLLLCIVSRNRHDLYKEVLYLANHDPLTHVGNRRFFFTQTENLLKENLVKSMSIIVL 350

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK++ND +GH +GD ++   +  +           R+GGEEF      ++E E+ I
Sbjct: 351 DIDHFKKMNDQYGHYIGDVLLQSFATTVKSNLREQDLFARMGGEEFVVVLNNTTEIESQI 410

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGR 252
           +A  + + +  S+  ++    + +T+S G+  +    +  + +++ RAD+ALY AK  GR
Sbjct: 411 IAERICRAVATSKTQVAHAV-LSMTVSLGVVHQVLPTQNSLQSLLNRADRALYQAKTLGR 469

Query: 253 NRVVCFS 259
           N+V   S
Sbjct: 470 NQVQLAS 476


>gi|254796867|ref|YP_003081704.1| Response regulator/GGDEF domain protein PleD [Neorickettsia
           risticii str. Illinois]
 gi|254590103|gb|ACT69465.1| Response regulator/GGDEF domain protein PleD [Neorickettsia
           risticii str. Illinois]
          Length = 457

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 9/165 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +++ ID L+ L N   F   +         S N+  S++  DIDYFK+IND  GH  GD 
Sbjct: 287 KMAVIDPLTSLYNRYYFEKYMDELLATLTKSQNKTFSLMMIDIDYFKKINDACGHLSGDL 346

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISS 212
           V+  L+  L         V + GGEE     +    ++A   A  +RK +E ++ + I+ 
Sbjct: 347 VLKQLATCLKGCLRLNDLVAKFGGEEIVVVLVDIGLEDAFATAERIRKTVEKTEFSTIND 406

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              + +T+S G++E   ++   T+I RAD  LY+AK+ GRNRVV 
Sbjct: 407 EVKVPLTVSIGVSEYQPQDTTKTLIGRADANLYIAKEKGRNRVVM 451


>gi|261856745|ref|YP_003264028.1| diguanylate cyclase [Halothiobacillus neapolitanus c2]
 gi|261837214|gb|ACX96981.1| diguanylate cyclase [Halothiobacillus neapolitanus c2]
          Length = 460

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 12/173 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQ 141
           + ++L  S  ++      D L+GL N  AF          +      L +  +D+DYFK+
Sbjct: 285 LHEQLVASTQKM----LRDTLTGLPNRLAFDERVALEAARMQREKTPLCLALWDVDYFKR 340

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND FGH  GDK +  +   L  +      V R GGEEF      +  Q+A ++   +R+
Sbjct: 341 VNDTFGHQAGDKALHVVGKTLSQLIRDVDMVARYGGEEFVMVLPKADLQQAFVVLERIRE 400

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            +  +       P + IT+S G+AE    E I +++ RAD+ALY AK +GRNR
Sbjct: 401 KLAGTAFRFKDTP-LKITLSCGVAEFGAGETIESVMARADEALYRAKSNGRNR 452


>gi|218246974|ref|YP_002372345.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8801]
 gi|218167452|gb|ACK66189.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8801]
          Length = 732

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 13/210 (6%)

Query: 68  NLSLVIISITIS-LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------ 120
           N  + ++S+  S + +     S  + L     ++ Q++ +D L+ + N   F        
Sbjct: 239 NAEIGLLSLLASQIAIAIQQDSFYQHLNAINQKLEQIAFVDRLTQISNRCYFEQYFTQEW 298

Query: 121 -SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGE 178
             +    + LS++  D+D+FK  ND +GH  GD  +  ++  +   +      V R GGE
Sbjct: 299 RRMAREKQPLSLILCDVDFFKSYNDTYGHLEGDFCLQKIAQAINTSIHRPGDLVARYGGE 358

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPI--ST 235
           EF      +    A  LA  +R  ++  ++ +     S  +T+S G+A     E +  + 
Sbjct: 359 EFVILLPNTKASGALYLAEQIRSQVKGLRMTSACQEVSPFVTLSLGVASFIPDESLLPAM 418

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           +I  AD ALY AKK GR+RV  F  ++N+T
Sbjct: 419 LISEADHALYEAKKQGRDRV-GFKAVDNST 447


>gi|186470454|ref|YP_001861772.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phymatum STM815]
 gi|184196763|gb|ACC74726.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phymatum STM815]
          Length = 1061

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 12/188 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + +   S  RI  L+  D L+ L N + F   LG          ++++++F D+D FK 
Sbjct: 614 DITDRKKSEARIEFLAEHDVLTELPNRALFTKRLGVVLDNAKHAQQRVAVLFIDLDRFKD 673

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILANDL 199
           IND+ GH +GD ++  +S +LV    +   V RLGG+EF       GS+   A  +   L
Sbjct: 674 INDSLGHHIGDGLLRSVSRRLVQAVRSGDTVSRLGGDEFTMVLADAGSAADVARTIDERL 733

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             ++   + +   G ++ +  S G+A        I T++  AD A+Y AK +GRN V  F
Sbjct: 734 LPLVR--EPHAIGGVTLQVACSVGVALYPDDGADIETLMQNADAAMYQAKAAGRNLVKFF 791

Query: 259 SDIENNTC 266
           S       
Sbjct: 792 SPDMAERA 799


>gi|114319326|ref|YP_741009.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225720|gb|ABI55519.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 437

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 81/175 (46%), Gaps = 11/175 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
             + E     + + + +  D L+G LN      +L    E+       LS+   D+D+FK
Sbjct: 260 QDISERKALQDALEREATFDQLTGALNRRRIEQALAREMERSNRHGDALSVALLDVDHFK 319

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH VGD+V+  L  +          +GR GGEEF      +    A  LA  LR
Sbjct: 320 RVNDQYGHNVGDRVLQTLIRRCKENLRAVDLIGRWGGEEFLIVLPDTDRHSALQLAERLR 379

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             I       + G    +T+S G+A     E +  ++ RAD ALY AK  GRNRV
Sbjct: 380 ARIAERARADTHG----VTVSLGLASFRPGEGLDQLVKRADDALYRAKDRGRNRV 430


>gi|330951794|gb|EGH52054.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 796

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 85/175 (48%), Gaps = 10/175 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +L      +  LS  D L+G  N   F   +         +   LS++  DID+FK
Sbjct: 620 SDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQSELKRIDRHGGNLSVIMLDIDHFK 679

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +A  LA  LR
Sbjct: 680 RINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRGAQAYQLALSLR 739

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +    I    G    +T S GIA     E +  ++ RAD  +Y AK++GR+RV
Sbjct: 740 DELRKQVI---EGVDQVVTGSFGIASWREGEGVDAMLLRADSGVYAAKQAGRDRV 791


>gi|170720554|ref|YP_001748242.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida W619]
 gi|169758557|gb|ACA71873.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida W619]
          Length = 818

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 54/204 (26%), Positives = 94/204 (46%), Gaps = 16/204 (7%)

Query: 70  SLVIISITISLLL--GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSL 122
           S V I++  S ++  G ++G +L    ++  R     +S  +  D L+GL N   F   L
Sbjct: 333 STVAINLVGSPIISDGQVAGIVLVLHDMTQERQYIANLSWQATHDALTGLANRREFEYRL 392

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                       + S++F D+D FK +ND  GH  GD+++  +   L  V      + RL
Sbjct: 393 EQALNDLVRQGGRHSLMFLDLDQFKLVNDTCGHAAGDELLRHICAVLQSVLREGDTLARL 452

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPIS 234
           GG+EF         ++A  +A +LR+ +++    +  G     T+S G+         + 
Sbjct: 453 GGDEFGVLLENCPGEQAERIAENLRQAVQSLHF-VWKGRPFVTTVSIGLVHMAQAPATLE 511

Query: 235 TIIYRADQALYVAKKSGRNRVVCF 258
             +  AD A Y+AK+ GRNR+  +
Sbjct: 512 ASLRAADMACYMAKEKGRNRIQVY 535


>gi|89072583|ref|ZP_01159155.1| putative c-di-GMP phosphodiesterase A-related protein
           [Photobacterium sp. SKA34]
 gi|89051687|gb|EAR57140.1| putative c-di-GMP phosphodiesterase A-related protein
           [Photobacterium sp. SKA34]
          Length = 690

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 7/178 (3%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPV 150
                +I QL ++D L+GLLN   F   L         + +++ DID FK IND+ GH +
Sbjct: 258 KRQQGQIEQLVQMDPLTGLLNRYGFTRQLDQLMKAETPVVMLYIDIDNFKNINDSLGHHI 317

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQIN 209
           GDKV+  ++ +L  +      +G L G+EFA        E+   I++  +  ++ N    
Sbjct: 318 GDKVLQEIAQRLRRLLPETAILGYLSGDEFAILLPNPEHERTGEIISEQIIALV-NQPFE 376

Query: 210 ISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           +      H+  S G +    H      ++  AD A+Y AK  GRNR+V F+D  +   
Sbjct: 377 LRHFRK-HLACSIGMVTSPGHGNDARMMLQNADTAMYEAKHRGRNRLVEFNDAMSKEA 433


>gi|229168789|ref|ZP_04296508.1| Sensory box/GGDEF family protein [Bacillus cereus AH621]
 gi|228614637|gb|EEK71743.1| Sensory box/GGDEF family protein [Bacillus cereus AH621]
          Length = 430

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          +EK++++ FDID FK +
Sbjct: 254 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILETEWENVLRNDEKVALILFDIDNFKSV 313

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L+D +           R GGEEF      + E+EA  +A  LR  
Sbjct: 314 NDTYGHDFGDLALVQLADLMKSKVEDQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 373

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q +  S     +T S G+A   +      ++ RAD ALY AKK+G+N+V  +
Sbjct: 374 IETKQFSGIS----KLTASFGVALHENGITKEELMQRADIALYEAKKNGKNQVCIY 425


>gi|254457680|ref|ZP_05071108.1| cache sensor signal transduction histidine kinase
           [Campylobacterales bacterium GD 1]
 gi|207086472|gb|EDZ63756.1| cache sensor signal transduction histidine kinase
           [Campylobacterales bacterium GD 1]
          Length = 642

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 86/181 (47%), Gaps = 12/181 (6%)

Query: 84  YISGSILKELFISYNRISQL-SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFD 135
            I     ++++     I    S  D L+G+ N S     +         Y + LS++  D
Sbjct: 464 LIKTERRRQIYEEKAHIYHKKSLTDPLTGVYNRSKAEDVMSHEINLAKLYGQPLSLIMLD 523

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK+IND  GH VGD+V+      +     +   V R GG+EF      +  ++AA+ 
Sbjct: 524 IDHFKEINDTLGHAVGDEVLVEFIKVINNNSRSNDIVIRNGGDEFLIICPNTEAKDAALH 583

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A ++R +IE++          ++T S G+      +    I  R D+ALY+AK+ GRN V
Sbjct: 584 AENIRSLIESNNYK----KDYNVTSSIGVTSYQTGDTKEAIFKRVDKALYIAKEKGRNCV 639

Query: 256 V 256
           V
Sbjct: 640 V 640


>gi|153000566|ref|YP_001366247.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella baltica OS185]
 gi|151365184|gb|ABS08184.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS185]
          Length = 749

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 9/184 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQ 141
           S + E   +   I   +  D L+GL N +A    + S           S +  D+D FKQ
Sbjct: 299 SDISERKKAAQLIKYQANNDSLTGLANRNALFKLIQSLITSDSLTPGFSFMLMDLDNFKQ 358

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND  GH  GD ++  +  Q+       M   RLGG+EFA    G  +++E A LA  + 
Sbjct: 359 VNDTHGHDKGDALLVQVVRQICECLNDTMVFARLGGDEFALLLPGIVNQKELAQLAETIN 418

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           K +    + ++ G  ++ ++S GIA        +  ++  ADQA+Y++K +GRNR   F+
Sbjct: 419 KHVAKRYV-LADGKGVYSSVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFT 477

Query: 260 DIEN 263
           +   
Sbjct: 478 EQMQ 481


>gi|78777034|ref|YP_393349.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78497574|gb|ABB44114.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM
           1251]
          Length = 487

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 69/254 (27%), Positives = 113/254 (44%), Gaps = 34/254 (13%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPF--YGLEYILVENLSLVIISITISLLLGYISGSI- 89
           +   + +A +I    I+    GL PF  +GL+   +     + I +  +L  G +   I 
Sbjct: 236 VLPGMIMALLITSIAIYYTSSGLGPFSIFGLKGTTIYLQEFIAILVITTLFFGVLHQEIN 295

Query: 90  --------------------LKELFISYNRISQLSRIDCLSGLLNHSAFISSL------- 122
                                K L  +  +++ L+  D L+ + N       +       
Sbjct: 296 ESKAKLEELNKNLENMVKEKTKSLMEANQKLNNLASKDSLTNIFNRRIIDEFISKETIKS 355

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
             YN  L+++  DID+FK++ND +GH VGD+VI  L D +          GR GGEEF  
Sbjct: 356 KRYNNSLALIMIDIDHFKEVNDKYGHQVGDEVILSLVDIISKNIRESDIFGRWGGEEFII 415

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
               ++  +A I+A ++RK ++  + +         TIS G++E    +  +  I R D 
Sbjct: 416 LLPETNLNQATIVAQNIRKKVQEYRFDKVGQK----TISLGVSEFNSNDDSTVFIKRVDD 471

Query: 243 ALYVAKKSGRNRVV 256
           ALY AK +GRNRVV
Sbjct: 472 ALYKAKATGRNRVV 485


>gi|24251273|gb|AAN46193.1| unknown protein [Synechococcus elongatus PCC 7942]
          Length = 960

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 57/191 (29%), Positives = 98/191 (51%), Gaps = 12/191 (6%)

Query: 78  ISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---------SYNE 127
           + +LL Y    + L E      ++ Q +  D L+G+LN   FI+              + 
Sbjct: 761 VVILLDYSGFQLTLLEPKKLEQKLQQQATTDALTGILNRRQFITLAQAELNRIYRIQRDT 820

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            LS+V  DID+FK IND++GH VGD+V+   ++             RLGG+EF      +
Sbjct: 821 SLSLVIIDIDHFKTINDSYGHTVGDQVLILWTNICQQNIREVDIFARLGGDEFVLMLPET 880

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYV 246
           + ++A  + + +R+++    +++    +I ITIS GIA    +   +   + RAD+ALY 
Sbjct: 881 NGKQAYQVMDRIRQLVIQQSLHLPQ-QAIAITISVGIAVWTPEILTLDQFLERADRALYQ 939

Query: 247 AKKSGRNRVVC 257
           AK+ GR+R++ 
Sbjct: 940 AKQQGRDRIIL 950


>gi|91977729|ref|YP_570388.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91684185|gb|ABE40487.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB5]
          Length = 823

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQ 141
            + E   +  +I+ ++  D L+ L N + +   L    E       +++++  D+D FK 
Sbjct: 379 DITERRKAEAKIAHMAHHDGLTNLPNRALYQERLQQALEQGRAGGARVAVLCIDLDLFKN 438

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           +ND+FGHP+GD+++  ++++L    G    V R GG+EFA      +S  EA+  A  L 
Sbjct: 439 VNDSFGHPMGDRLLRCVAERLRAQVGGQDLVARFGGDEFAIVLAQVTSPNEASDFAARLI 498

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +I+  S      G  + I  S GIA      E    ++  AD ALY AK  G      F 
Sbjct: 499 EIV--SAPYDMDGLEVVIGASIGIALAPGDGEDCDALLRNADMALYRAKAHGGGCHHFFE 556

Query: 260 DIENNTC 266
              +   
Sbjct: 557 KEMDRQA 563


>gi|297191891|ref|ZP_06909289.1| integral membrane phosphodiesterase [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|297151117|gb|EDY65041.2| integral membrane phosphodiesterase [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 935

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 85/193 (44%), Gaps = 16/193 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
            +   + E      ++   +  D L+ L N + F   +          +E  +++F D+D
Sbjct: 453 FNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTERVRGALTGRRAGDEGTAVLFIDLD 512

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-------EQ 190
            FK +ND  GH  GD+++   + +L           RLGG+EFAA  +G         E 
Sbjct: 513 GFKGVNDRLGHQAGDELLIQAARRLADSVRAGDTAARLGGDEFAALIVGDGSGDRSARES 572

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +   +A+ LR ++  SQ     G  + +  S G+A        + ++  AD A+Y AK +
Sbjct: 573 QVLEIADRLRLML--SQPYRIDGGEVRVAASIGVAFAEPAMSPTDLMRNADLAMYRAKAA 630

Query: 251 GRNRVVCFSDIEN 263
           G++RV  ++    
Sbjct: 631 GKDRVELYAPQMQ 643


>gi|260220372|emb|CBA27846.1| hypothetical protein Csp_A04310 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 553

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 52/162 (32%), Positives = 74/162 (45%), Gaps = 9/162 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +LS  D L+GL N   F       I  +    E   ++  DID+FK++ND +GH  GD
Sbjct: 93  LCELSLKDPLTGLANRRHFRGVLERSIDVVARSGEPALLLMLDIDHFKKVNDTYGHQAGD 152

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  ++  L         V R GGEEF+             +A  +R  IE   I I+ 
Sbjct: 153 QVLQAIAKALTGCVRPMDTVARFGGEEFSVMLPSCHTGFGTAVAERIRAHIEAMSIPIAP 212

Query: 213 GPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGR 252
           G SI +T+S G A      +   +    RAD  LY AK  GR
Sbjct: 213 GLSIKVTVSIGGAFAPEWVRSTATLWTERADMQLYRAKSEGR 254


>gi|89094625|ref|ZP_01167562.1| GGDEF domain protein [Oceanospirillum sp. MED92]
 gi|89081095|gb|EAR60330.1| GGDEF domain protein [Oceanospirillum sp. MED92]
          Length = 405

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 109/227 (48%), Gaps = 18/227 (7%)

Query: 45  IANIFLFYIGLTPFYGLE----YILVENLSLVIISITISLLLGYISGSILKELFISYNRI 100
           +   F  Y  ++ F G       + V  L+L+++ I I+    ++  +  K L     ++
Sbjct: 173 VIGAFEIYQDMSGFRGEVQQGVALFVGGLALIVLGI-ITTAFAFMRKA-AKRLISQQYQL 230

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKL----------SIVFFDIDYFKQINDNFGHPV 150
             L+ +D ++GL N +     + +  ++           +++  D+D+FK+INDN+GH  
Sbjct: 231 ETLATVDSVTGLYNRAEITRRMEAEWQRFKRGGPDARKFALLMLDLDHFKRINDNYGHLA 290

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+++  ++ +L     +   +GR GGEEF       +  +A  +A  LR  +     ++
Sbjct: 291 GDELLRRVAGRLREELRSYSEIGRYGGEEFIVLIPEITNCDAYSVAERLRVRLVEPGFDL 350

Query: 211 SSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
               ++ IT S G A     +  +  +I RAD  LY AK +GRNRVV
Sbjct: 351 GD-ETVSITTSIGFAIADDSDKDLDALIKRADDCLYEAKGAGRNRVV 396


>gi|307304289|ref|ZP_07584041.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Sinorhizobium meliloti BL225C]
 gi|306902757|gb|EFN33350.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Sinorhizobium meliloti BL225C]
          Length = 772

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 12/181 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIV-FFDIDYFKQIND 144
           E   + +RI  ++  D L+GL N   F   +          ++ +++ F D+D FK IND
Sbjct: 332 ERKRAEDRIGFMAHHDALTGLPNRVLFEEQVAGMLEEIRERDQWAVLAFLDLDDFKLIND 391

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL--ANDLRKI 202
           + GH  GD+++  ++ ++         V R+GG+EF     G  ++   +L    D+R  
Sbjct: 392 SLGHATGDELLKIVAGRMRAAVRRSDSVVRVGGDEFIILLNGLPKERDVVLSRLEDIRTA 451

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           I    + +  G S+ ++ S G+A      +    ++  AD A+Y AK+ GRN +  F++ 
Sbjct: 452 IA-MPVQL-QGRSLQVSCSMGVACFPNQGKTAGELLANADMAMYRAKELGRNNIQVFTEE 509

Query: 262 E 262
            
Sbjct: 510 M 510


>gi|326317200|ref|YP_004234872.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374036|gb|ADX46305.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 1040

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 81/194 (41%), Gaps = 12/194 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
            I+   L +   +   I  L+  D L+ L N    +  L              +++  D+
Sbjct: 578 LITMVDLSQHKAAEEEIHYLAYYDPLTQLPNRRLLVDRLQQALAASVRRGRCGAVLMLDL 637

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAI 194
           D FK +N+  GH  GD ++  ++ +L         V R GG+EF      LG S Q AA 
Sbjct: 638 DNFKTLNETQGHERGDMLLRQVAQRLRGCVQNEDTVARHGGDEFVVVLEDLGQSPQGAAA 697

Query: 195 LANDLRKII--ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSG 251
            A ++ + I        +  G + H T+S G+       E +  ++ R D A+Y AK SG
Sbjct: 698 RAEEMGQKILAAMRHPFMLEGEAHHTTLSMGVTVFQGARETVDELLQRTDLAMYQAKASG 757

Query: 252 RNRVVCFSDIENNT 265
           RN +  +      +
Sbjct: 758 RNALRFYDPQMQAS 771


>gi|269139399|ref|YP_003296100.1| hypothetical protein ETAE_2054 [Edwardsiella tarda EIB202]
 gi|267985060|gb|ACY84889.1| hypothetical protein ETAE_2054 [Edwardsiella tarda EIB202]
 gi|304559295|gb|ADM41959.1| hypothetical protein ETAF_1853 [Edwardsiella tarda FL6-60]
          Length = 351

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 69/267 (25%), Positives = 117/267 (43%), Gaps = 24/267 (8%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFI-------ANIFLFYIGLTPFYGL 61
           L+ WL +      F      +  ++F  + +A V+            F+  I L   + L
Sbjct: 90  LTAWLLNFVTTGGF------VLDNLFIGMMLAPVLLARVWRRNTLRTFILCISLVTLFRL 143

Query: 62  EYIL---VENLSL--VIISITIS---LLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
             ++    + + L  V++  TIS   LL+ Y + ++ +    +Y  +S+ +  D L+   
Sbjct: 144 LIVIPYVTQRIYLLDVLLHQTISYFCLLVCYQTLALKQRSISAYFTLSESALRDQLTQTN 203

Query: 114 NHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           N          L        I   DID FKQIND +GH  GD+V+  ++           
Sbjct: 204 NRQGLQQQILRLEHSRSACCIAMIDIDNFKQINDRYGHLCGDRVLTAVAAIASQTLQPRD 263

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
           ++ R GGEEF     G + + A      +R+ I ++ I +     I +T S G++    +
Sbjct: 264 YMARFGGEEFVILFPGKTLERANARCEQIRQAICSTPIYLCHNQQIRVTASFGLSYFDGR 323

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVC 257
           + +   I RAD ALY AK+ G+NRV C
Sbjct: 324 DSLQQAIARADGALYRAKRRGKNRVEC 350


>gi|237798898|ref|ZP_04587359.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021752|gb|EGI01809.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 249

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 114/236 (48%), Gaps = 10/236 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96
           +F         + +    L P   L+  + +  + V + +   +++G++S  +  +L   
Sbjct: 8   MFQGIFAQALGVLISLALLNPVVNLQGNMAQIYACVPVLVIYPIVIGWLSHQVTLKLCEH 67

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
            N + +LSR D L+GLLNH A+   L        +  +   I   DID+FK +ND +GH 
Sbjct: 68  RNILRKLSRTDSLTGLLNHGAWKDLLDLEFTKSQNAYQHCVIALIDIDHFKVVNDTYGHI 127

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD V+  +S+ L+        +GR GG+EF      +S  +A      +R  I+  ++ 
Sbjct: 128 MGDTVLQNISEALLDNLRDSDLIGRCGGDEFCVILPDTSLIQARETLERMRLAID--KMT 185

Query: 210 ISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            S    + +++S GIA         ++ ++ AD+ALY+AK +GRNR+V   D    
Sbjct: 186 HSRHCDLKVSLSIGIAAYMSEMSDAASWLHEADKALYLAKSTGRNRIVSAKDAPQE 241


>gi|167035811|ref|YP_001671042.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida GB-1]
 gi|166862299|gb|ABZ00707.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida GB-1]
          Length = 568

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 10/179 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
            + E       +   +  D L+GL N      +L          +  +++   D+D FKQ
Sbjct: 113 DVTEKRKLLETLQWQAEHDELTGLPNRFLLSKALDQAIVKAKSQSSTVAVGVLDLDGFKQ 172

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH +GD+++  ++D+L         V RLGG+EF   +     +        L  
Sbjct: 173 INDRYGHEIGDRLLVAVADRLKHSMRIEDTVARLGGDEFVLISGVRDPKVLESALQRLLA 232

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +  S + +  G  I+I+ S G+    +  E   T++  ADQA+Y AK+SGRN    F 
Sbjct: 233 AL--SAVYVIDGIGINISASIGVTLYPNDNENADTLLRHADQAMYKAKQSGRNCFYLFD 289


>gi|21242240|ref|NP_641822.1| sensor histidine kinase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21107664|gb|AAM36358.1| sensor histidine kinase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 566

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 57/192 (29%), Positives = 86/192 (44%), Gaps = 9/192 (4%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SY 125
           + S+T++          L  L +    + Q S  D L+GL N      +L          
Sbjct: 367 LASLTVAEAAAEQLSLALHNLRL-RETLRQQSIRDPLTGLYNRRYLEETLSHELARCTRR 425

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              LS++  D+D+FK+ ND  GH  GD+V+A + + L+          R GGEE      
Sbjct: 426 ELPLSVLMLDVDHFKRFNDLHGHSGGDRVLAAIGELLLAQTRGEDICCRYGGEELTIILP 485

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
                 A ++A  LR  IE  Q+         +T S G A    H   +++++ RAD AL
Sbjct: 486 EVDLPTACMMAEKLRAGIEALQVMGDGVCLPKVTASFGAASFPAHASTVASLLQRADAAL 545

Query: 245 YVAKKSGRNRVV 256
           Y AK+ GRN+VV
Sbjct: 546 YRAKQGGRNQVV 557


>gi|149375454|ref|ZP_01893224.1| hypothetical protein MDG893_16397 [Marinobacter algicola DG893]
 gi|149360159|gb|EDM48613.1| hypothetical protein MDG893_16397 [Marinobacter algicola DG893]
          Length = 757

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 8/169 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
              + + S  D L+GL N   F   L          ++ LS++  DID+FK+ ND  GH 
Sbjct: 588 REELQKYSYEDALTGLKNRRYFDQLLEHESAVALRGDQPLSLLIVDIDHFKRFNDTHGHE 647

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  ++  L   F     V R GGEEF     GSS + A   A +L + +    + 
Sbjct: 648 AGDSALKAVAGMLARHFRDSDVVCRFGGEEFVIIMAGSSAKAAYDKARELARAVRTMTVE 707

Query: 210 ISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
                  H+TIS G++      +   +++  AD+ALY AK+ GR+RV  
Sbjct: 708 HGGFELGHVTISVGVSSWPECSDSPDSLLGLADRALYRAKEGGRDRVEI 756


>gi|91203249|emb|CAJ72888.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 829

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 9/179 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E       +  ++  D L+ L N   F   L         YN   +++F DID FK 
Sbjct: 392 DITERKKFEEMLVVMAEHDPLTNLFNRRRFQVELEYWLGYSKRYNTGGALLFLDIDNFKY 451

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH VGD+++   +  L         + RLGG+EFA     ++   A   A  + +
Sbjct: 452 INDTLGHKVGDEILVEFAILLKERVRPNDIIARLGGDEFAVILPNTNVDHARSFAEQITQ 511

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                   + +    +IT S GIA    H      ++  AD A+Y AK++G+N+   FS
Sbjct: 512 S-AQKHFRVLNERGHNITTSLGIALFPDHSLEADALLACADMAMYGAKEAGKNQCCIFS 569


>gi|325294684|ref|YP_004281198.1| diguanylate cyclase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065132|gb|ADY73139.1| diguanylate cyclase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 547

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 16/193 (8%)

Query: 77  TISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSL--------GSYN 126
           +I+ L+ +++      L I   +  +   +  D L+ L      +  L          Y 
Sbjct: 360 SIASLIVHVAKREKWLLSIQEKKKLLKDKAYKDILTDLY-RRELVKELIEKEFHRSKRYG 418

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
              S++  DID FK+IND +GH +GDKV+  +++ +           R GGEEF      
Sbjct: 419 YHFSVLMIDIDDFKKINDTYGHLLGDKVLKKVAEIIKNELRKSDIPIRYGGEEFLIILPH 478

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
           ++ + A  +A+ +RK +E ++I+      I  ++S G+A+      +  II +ADQALY 
Sbjct: 479 TNLEAARKIADRIRKAVEKTEID-----GIKTSVSIGVADNSLSRKLEDIIKKADQALYT 533

Query: 247 AKKSGRNRVVCFS 259
           AK+ G+N+VV  +
Sbjct: 534 AKRMGKNKVVVAT 546


>gi|323498467|ref|ZP_08103461.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
 gi|323316479|gb|EGA69496.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
          Length = 387

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 9/174 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           K+L  +  ++ +LS  D L+ L N    I  L           E L  +  D DYFKQ+N
Sbjct: 193 KQLSQANKQLEELSLTDSLTRLPNRRCAIRKLKVYWQEAIQNQEPLVCIMIDADYFKQVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+++  L+  L   F +   V RLGG+EF      +  +  A +A   R+ +
Sbjct: 253 DTAGHDAGDRLLIELAQTLQHSFRSDDLVCRLGGDEFFVICPNTDLEGGAHIAELTRQKV 312

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
               + +        +IS G+ ER  +    + +I  AD A+Y AK SGRN+V 
Sbjct: 313 NQMLVPVGESVWRG-SISIGVGERSDEMVDYNDLIKVADNAVYQAKSSGRNQVA 365


>gi|323186711|gb|EFZ72033.1| cellulose synthesis regulatory protein [Escherichia coli RN587/1]
          Length = 558

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LLL  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               +    S++  D+D+FK IND FGH VGD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQMHQHPFSVIQVDLDHFKAINDRFGHQVGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G++  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 536 LADRRLYLAKQAGRNRV-FASD 556


>gi|296391769|ref|ZP_06881244.1| hypothetical protein PaerPAb_26609 [Pseudomonas aeruginosa PAb1]
          Length = 633

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 11/185 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   ++   +  D L+GL N    +            +   ++++  D+D+FK IN
Sbjct: 436 RQLQMREAQLQYAAHHDPLTGLGNRRHLMEFAESALDDARRHGNSMALLLIDLDHFKPIN 495

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKI 202
           D  GH  GD V+  ++ +L     T   V RLGG+EFA    GS+ EQ A  +A  L + 
Sbjct: 496 DTHGHDAGDFVLQNVAQRLRHCVRTEDCVARLGGDEFAVLVGGSNAEQHARDIAERLLR- 554

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            E ++    +   + IT S G+A           +   ADQALY  K +GR      +D 
Sbjct: 555 -ELAKPVEFAKQWLVITPSIGVALFPGDALQFGKLYKAADQALYRVKGAGRAGYAMAADD 613

Query: 262 ENNTC 266
           E  T 
Sbjct: 614 ERETA 618


>gi|254784885|ref|YP_003072313.1| GGDEF domain-containing protein [Teredinibacter turnerae T7901]
 gi|237684770|gb|ACR12034.1| GGDEF domain protein [Teredinibacter turnerae T7901]
          Length = 439

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 66/217 (30%), Positives = 110/217 (50%), Gaps = 9/217 (4%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI--LKELFISYNRISQLSRIDC 108
           +Y+ +  F+ +  +LV     V +   +S     ++ +I   ++L     +  +LS+ID 
Sbjct: 220 WYLVIGCFWFVALLLVSFQKYVTLRRQVSDSAQKLNEAITKARKLEAESAKYRELSQIDQ 279

Query: 109 LSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           L+  LN    + ++  Y+        +++  D+D+FKQINDN+GH  GDKV+A +   L 
Sbjct: 280 LTQTLNRRGLMQTIDRYDHAKSWFSTAVILLDVDHFKQINDNYGHNSGDKVLAQIGRILR 339

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
               T   VGR GGEEF      ++   A  +A  +R II+    +I +     +++S G
Sbjct: 340 ENVRTQDDVGRWGGEEFILVCPKTTAAGATAIAEKIRAIIDYKTFSIEN--DFRVSVSVG 397

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           I+     E    + +RAD ALY AK SGRN VV  ++
Sbjct: 398 ISIGHRSEHFEDVYHRADHALYEAKNSGRNCVVVAAE 434


>gi|194292502|ref|YP_002008409.1| response regulator receiver, diguanylate cyclase (ggdef domain)
           [Cupriavidus taiwanensis LMG 19424]
 gi|193226406|emb|CAQ72355.1| Response regulator receiver, putative diguanylate cyclase (GGDEF
           domain) [Cupriavidus taiwanensis LMG 19424]
          Length = 346

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+GL N   F   LG           +++++  D+D FK  N
Sbjct: 166 QQLLETNLELQRLTNSDGLTGLSNRRYFDEYLGAEWRRALREQTQVALLMIDVDAFKAYN 225

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD V+  ++  +            R GGEEFA     +S     +LA  +R+ 
Sbjct: 226 DTYGHVAGDDVLRRVATVIRDNCVRATDLPARFGGEEFAMVLPATSPGGVRLLAEKVRRA 285

Query: 203 IENSQINISSGPSIH-ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++   I  S  P++  +T+S G A          S ++  AD  LY AK++GRN+V+ 
Sbjct: 286 VQGLAIAHSGSPTLDCVTVSIGGAVMVPRPGAQPSQLVEAADAGLYQAKRNGRNQVMM 343


>gi|190573225|ref|YP_001971070.1| putative transmembrane GGDEF signalling regulatory protein
           [Stenotrophomonas maltophilia K279a]
 gi|190011147|emb|CAQ44756.1| putative transmembrane GGDEF signalling regulatory protein
           [Stenotrophomonas maltophilia K279a]
          Length = 589

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 77/172 (44%), Gaps = 5/172 (2%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE----KLSIVFFDIDYFKQINDNF 146
           +E     + + QL+  D L+GLLN  A    +   +        ++  D+D FK IND  
Sbjct: 410 RERSALTSELRQLAGTDELTGLLNRRALDEVVQQRHAGGDASAVVILLDVDRFKAINDGH 469

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+V+  ++  L         + R GGEEF              LA  LR  ++  
Sbjct: 470 GHDAGDEVLVRVAQLLRHQLRRSDSIARYGGEEFLVLLADGDLAGGRQLAESLRLALQQM 529

Query: 207 QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            I ++ G  + +T S G+AE         T++  AD A+Y AK  GR+RV  
Sbjct: 530 DIALAGGTVLRVTASFGVAEGGTDALGWRTLLRAADAAMYRAKAQGRDRVRV 581


>gi|170767858|ref|ZP_02902311.1| MASE2 domain/diguanylate cyclase [Escherichia albertii TW07627]
 gi|170123346|gb|EDS92277.1| MASE2 domain/diguanylate cyclase [Escherichia albertii TW07627]
          Length = 320

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT     L    +E    + I I   LL G++S     +L  
Sbjct: 91  LFVAGLVLMVVSCLVTLELTGITVSLNSAPLEWWLSLPIIIIYPLLFGWVSYQTAIKLAE 150

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 151 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 210

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + + N + 
Sbjct: 211 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAENAITAMLRVHEGLNNLR- 269

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
            +S+ P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 270 -LSNAPQVVLRISVGVAPLNPQMSHYREWLKSADMALYKAKKAGRNRTEV 318


>gi|163853267|ref|YP_001641310.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163664872|gb|ABY32239.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 700

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 58/190 (30%), Positives = 91/190 (47%), Gaps = 12/190 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNE-KLSIVFFDID 137
           +   + E   +  RI  ++R D L+ L N +         +++L +  E  L+++  D+D
Sbjct: 247 TFEDITERRRNEARIIHMARHDGLTDLPNRTHLREVGAEWLAALRTAAEAPLAVLCLDLD 306

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND+FGH VGD ++  ++D+L     +   V RLGG+EFA  +       AA LA 
Sbjct: 307 RFKPVNDSFGHAVGDALLRAVADRLRGHVRSHDVVARLGGDEFAVLSRVEDAAAAATLAE 366

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255
            L + +         G ++ I +SAGIA         I  ++  AD ALY AK  GR  V
Sbjct: 367 RLIETVAA--PYTLDGITVEIGMSAGIALAEGDVPHDIERLLKEADLALYEAKTEGRGTV 424

Query: 256 VCFSDIENNT 265
             F    + T
Sbjct: 425 RLFEPQMDET 434


>gi|157803455|ref|YP_001492004.1| response regulator PleD [Rickettsia canadensis str. McKiel]
 gi|157784718|gb|ABV73219.1| response regulator PleD [Rickettsia canadensis str. McKiel]
          Length = 450

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 90/191 (47%), Gaps = 13/191 (6%)

Query: 79  SLLLGYISGSILKELFISYNR--ISQ---LSRIDCLSGLLNHSAFISSLGSYNEK----- 128
           S LL  I   + ++ +    R  + Q   L+  DCL+GL N   F   L    EK     
Sbjct: 258 SELLARIRTQLRRKQYQDNLRNYLEQSVNLAAKDCLTGLFNRRYFDIHLKQMIEKANKES 317

Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             L ++  DID FK +ND +GH  GDK++  +S  L         + R GGEEF      
Sbjct: 318 IKLYLLMCDIDNFKYVNDTYGHQAGDKILTIVSRILKNNLRVTDLIARFGGEEFTILLTD 377

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALY 245
               +A   A  +R  IE    +I      +  TIS G+ E   +E I + I RAD A+Y
Sbjct: 378 IDISKAIETAERVRVKIEYMDFHIEDQIEPLKKTISIGVTEYKKEESIESFIARADNAMY 437

Query: 246 VAKKSGRNRVV 256
            AK++G+N+VV
Sbjct: 438 EAKRTGKNKVV 448


>gi|114797892|ref|YP_760661.1| diguanylate cyclase [Hyphomonas neptunium ATCC 15444]
 gi|114738066|gb|ABI76191.1| diguanylate cyclase [Hyphomonas neptunium ATCC 15444]
          Length = 291

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 67/249 (26%), Positives = 113/249 (45%), Gaps = 17/249 (6%)

Query: 29  IYFSIFFSIFIATVIFIANI---FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI 85
           I+ ++ F + +A      +     LFY    P     Y+ +     + +S  ++L    I
Sbjct: 8   IWSAVNFFMLVACTALSLSFTVSLLFYKMGLPTDISSYVRLN----LFVSGCVALPTAII 63

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDY 138
           +      +     R+ +++  D L+GLLN   FI       S +    +  +IV  D+D+
Sbjct: 64  ASLHDFHMRAYQRRLEEMAWTDALTGLLNRRFFIHAAEEERSRMRRTKQSAAIVLIDLDH 123

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILAN 197
           FK++ND +GH  GD V+  ++         P   +GR GGEEF       S++ A I+  
Sbjct: 124 FKEVNDLYGHSGGDLVLKEIAAIAHSELRGPFDRLGRWGGEEFVVLLSCVSKEHAMIVCE 183

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            LR+ IE + I +     + +T S G+     + P++  I  AD ALY  K+ GRN+V  
Sbjct: 184 RLRRRIEAATIFVGD-KEVSVTASFGLCMMSPETPLNAAIDCADGALYEVKRLGRNKV-L 241

Query: 258 FSDIENNTC 266
           F D+     
Sbjct: 242 FRDVPEGEA 250


>gi|83593899|ref|YP_427651.1| diguanylate cyclase [Rhodospirillum rubrum ATCC 11170]
 gi|83576813|gb|ABC23364.1| Putative diguanylate cyclase (GGDEF domain) [Rhodospirillum rubrum
           ATCC 11170]
          Length = 397

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 12/194 (6%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LG 123
           LV+  +  + ++    G +L     +   + +L+  D ++GL N   F+++        G
Sbjct: 189 LVVYGLAYAFMITNGFGFLLLVKEDTDAALRRLADTDQMTGLANRRHFLTASQEAWKLAG 248

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                 +++ FD+D+FKQ+ND+ GH  GD  +  L+  +  V       GR+GGEEFA  
Sbjct: 249 RLGRPTALMMFDVDHFKQVNDSQGHAAGDAALVDLARNVREVLRDIDIFGRMGGEEFAIT 308

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
             G     AA++A  +R+ +  S+     G    ITIS G+      EP  T + RAD  
Sbjct: 309 LPGCDLVAAAVIAERVRRAVAESR-----GEGPAITISLGLTILVAGEPFDTALKRADHG 363

Query: 244 LYVAKKSGRNRVVC 257
           LY AK +GRNRV C
Sbjct: 364 LYQAKAAGRNRVCC 377


>gi|127511240|ref|YP_001092437.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           loihica PV-4]
 gi|126636535|gb|ABO22178.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           loihica PV-4]
          Length = 882

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 16/195 (8%)

Query: 79  SLLLGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSAFISSLGSY--------NE 127
           +  L  ++  + KE+        ++   +  D L+GL N + F+  L            +
Sbjct: 422 TRALAMLNQDLEKEIAQRRKVEQQLVHDASHDTLTGLPNRAMFMERLAQAVKHVRRHARD 481

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           + +++F D+D FK IND  GH  GD+ +   + +L +   +   +GR+GG+EF       
Sbjct: 482 RFALLFIDLDRFKLINDTLGHLQGDRFLIETARRLNLCIRSNDTLGRIGGDEFVILLDSI 541

Query: 188 SEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQAL 244
           +   +A  +A  +    E S+    S  S     S GIA   H   +   +++  AD A+
Sbjct: 542 NTNSDAIEVAERILG--ELSEPYQLSNQSFTSGASIGIAFSGHSSGDTSESLLKDADAAM 599

Query: 245 YVAKKSGRNRVVCFS 259
           Y AK +G+   V F 
Sbjct: 600 YQAKSNGKGCFVIFD 614


>gi|251798349|ref|YP_003013080.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Paenibacillus sp. JDR-2]
 gi|247545975|gb|ACT02994.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Paenibacillus sp. JDR-2]
          Length = 1095

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 82/184 (44%), Gaps = 11/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + E   +    + L+  D L+ L N   F   L +            ++++ D+D FK 
Sbjct: 493 DVTERKRAEELNAFLAYHDSLTELPNRRKFEEMLENALETAKTARRHFAVMYLDMDRFKY 552

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH VGD+++   S +L        F  R+GG+EF        +  +AI     R+
Sbjct: 553 INDSLGHAVGDQLLIAFSKRLQEQIRETDFAARMGGDEFTVILPHIRDNNSAI--EVARR 610

Query: 202 IIENS-QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           IIE + +        + IT S GI+      +  ST++  AD AL+ AK  G+N    F+
Sbjct: 611 IIERTREPFYIEDYELFITTSIGISIYPNDGDDSSTLMKNADSALFRAKDLGKNGYQIFT 670

Query: 260 DIEN 263
              N
Sbjct: 671 SSMN 674


>gi|160875536|ref|YP_001554852.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160861058|gb|ABX49592.1| diguanylate cyclase [Shewanella baltica OS195]
          Length = 928

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 92/208 (44%), Gaps = 12/208 (5%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
              L YI+   + L ++ + + LL+       + +  ++  R+  ++  D L+ L N + 
Sbjct: 722 LQWLRYIVFGVIILCLVMVAV-LLVNRRLNREITQRLVAEKRLLHVANHDALTQLPNRAL 780

Query: 118 FISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
               L              +++F D+D FKQIND  GHP+GD+++  ++ +L  V     
Sbjct: 781 LDDRLAQALLSHQREQAHFALLFVDLDGFKQINDQHGHPIGDELLIQVAQKLTKVIRGSD 840

Query: 171 FVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC- 228
            V R GG+EF            A  +A+++ + +  S   +  G S+ I +S G+     
Sbjct: 841 TVARFGGDEFVILLNRVQDLDAATQVADNILQAL--SSPLLIQGVSVSIAVSMGVVIYPR 898

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256
             +    ++ +ADQ +Y AK  G     
Sbjct: 899 DGDTAIGLLKKADQLMYQAKSCGGRCYR 926


>gi|30265434|ref|NP_847811.1| GGDEF domain-containing protein [Bacillus anthracis str. Ames]
 gi|47530994|ref|YP_022343.1| GGDEF domain-containing protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188252|ref|YP_031505.1| GGDEF domain-containing protein [Bacillus anthracis str. Sterne]
 gi|65317396|ref|ZP_00390355.1| COG2199: FOG: GGDEF domain [Bacillus anthracis str. A2012]
 gi|165871271|ref|ZP_02215920.1| GGDEF domain protein [Bacillus anthracis str. A0488]
 gi|167635791|ref|ZP_02394101.1| GGDEF domain protein [Bacillus anthracis str. A0442]
 gi|167640369|ref|ZP_02398633.1| GGDEF domain protein [Bacillus anthracis str. A0193]
 gi|170688218|ref|ZP_02879429.1| GGDEF domain protein [Bacillus anthracis str. A0465]
 gi|170708020|ref|ZP_02898468.1| GGDEF domain protein [Bacillus anthracis str. A0389]
 gi|177651838|ref|ZP_02934421.1| GGDEF domain protein [Bacillus anthracis str. A0174]
 gi|190568904|ref|ZP_03021806.1| GGDEF domain protein [Bacillus anthracis Tsiankovskii-I]
 gi|227818183|ref|YP_002818192.1| GGDEF domain protein [Bacillus anthracis str. CDC 684]
 gi|228930423|ref|ZP_04093424.1| GGDEF domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229600552|ref|YP_002869626.1| GGDEF domain protein [Bacillus anthracis str. A0248]
 gi|254687144|ref|ZP_05151002.1| GGDEF domain protein [Bacillus anthracis str. CNEVA-9066]
 gi|254724073|ref|ZP_05185858.1| GGDEF domain protein [Bacillus anthracis str. A1055]
 gi|254735535|ref|ZP_05193242.1| GGDEF domain protein [Bacillus anthracis str. Western North America
           USA6153]
 gi|254742200|ref|ZP_05199887.1| GGDEF domain protein [Bacillus anthracis str. Kruger B]
 gi|254755889|ref|ZP_05207921.1| GGDEF domain protein [Bacillus anthracis str. Vollum]
 gi|254761601|ref|ZP_05213621.1| GGDEF domain protein [Bacillus anthracis str. Australia 94]
 gi|30260112|gb|AAP29297.1| diguanylate cyclase (GGDEF) domain protein [Bacillus anthracis str.
           Ames]
 gi|47506142|gb|AAT34818.1| GGDEF domain protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49182179|gb|AAT57555.1| GGDEF domain protein [Bacillus anthracis str. Sterne]
 gi|164712938|gb|EDR18466.1| GGDEF domain protein [Bacillus anthracis str. A0488]
 gi|167511589|gb|EDR86971.1| GGDEF domain protein [Bacillus anthracis str. A0193]
 gi|167528900|gb|EDR91657.1| GGDEF domain protein [Bacillus anthracis str. A0442]
 gi|170126993|gb|EDS95872.1| GGDEF domain protein [Bacillus anthracis str. A0389]
 gi|170667911|gb|EDT18663.1| GGDEF domain protein [Bacillus anthracis str. A0465]
 gi|172082542|gb|EDT67606.1| GGDEF domain protein [Bacillus anthracis str. A0174]
 gi|190559971|gb|EDV13954.1| GGDEF domain protein [Bacillus anthracis Tsiankovskii-I]
 gi|227003653|gb|ACP13396.1| diguanylate cyclase (GGDEF) domain protein [Bacillus anthracis str.
           CDC 684]
 gi|228829270|gb|EEM74906.1| GGDEF domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229264960|gb|ACQ46597.1| GGDEF domain protein [Bacillus anthracis str. A0248]
          Length = 351

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 108/227 (47%), Gaps = 12/227 (5%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           S+F   + F  N++  +I   P   L   +   ++L ++  +++  + +IS + + +   
Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLSMLFKDM-SIVALYLVCSSVAAYITFISANYVLQSNE 182

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
            + ++ Q + ID L+GL N   F   +  +       N  L ++  DID+FK +ND +GH
Sbjct: 183 LFQKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSVNDTYGH 242

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           P GD+V+  +   L  V   P    R GGEEFA             +   +R  +E    
Sbjct: 243 PAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAAVEKHSF 302

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  G  I IT+S GI+    ++     I  AD ALY +K++GRN+V
Sbjct: 303 QLLDGTKIKITVSVGISVY--EQSPERFIQAADDALYYSKRNGRNQV 347


>gi|330811572|ref|YP_004356034.1| diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379680|gb|AEA71030.1| Putative diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 498

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 12/167 (7%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +QL+ +D L+GL N      +L           + LS++  D D+FK  ND  GH  GD+
Sbjct: 332 AQLASVDSLTGLANRRTLDETLQQEWLRAQRSGQPLSVLMIDADHFKAFNDRHGHQRGDE 391

Query: 154 VIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            +  L+  +      P     R GGEEF+     ++   A  +A ++R+ +E   + ++ 
Sbjct: 392 ALRTLAQLISKHVRRPADLAARYGGEEFSVVLPETTTAGAFTMAQNIREAVEQL-LPVAE 450

Query: 213 GPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
           G +  +T+S GIA   +     +  +++ AD+ALY AK SGRNRVVC
Sbjct: 451 GEA-PMTVSIGIATWVNGPYGELQQLLFAADKALYQAKSSGRNRVVC 496


>gi|326795027|ref|YP_004312847.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326545791|gb|ADZ91011.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 367

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 125/250 (50%), Gaps = 15/250 (6%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN---LSLVIIS 75
           L +   +TF  + S  + + I+  +F   +FLF++  T        L+E    L  ++  
Sbjct: 113 LATVGAYTFTAFRSAQWMMQIS--LFTLAVFLFFLCETLGAQFGPYLLEGQQPLFSILSF 170

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA--------FISSLGSYNE 127
           +    ++  ++  ++  L      +  L+  D L+GL N           F  S+ +Y E
Sbjct: 171 VVAIGVVAIVTNHVVGRLRTLNKSLQDLAEKDELTGLSNRRKVLADAVNVFADSIINY-E 229

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
             ++   D+D+FK+IND +GH  GD V+  ++ +++    + + VGR GGEEF      +
Sbjct: 230 PCAMAIADLDHFKRINDTYGHDAGDTVLKAVASEMLRQLPSEVKVGRYGGEEFIFVMPST 289

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYV 246
           +  +A      LR++IE+ +I+  +G  I +TIS G+A           II +AD+ALY 
Sbjct: 290 NLNDATSEMEHLREVIESLEISTPNGIVIPVTISIGVASLDSDTSRYEEIITQADKALYQ 349

Query: 247 AKKSGRNRVV 256
           AK +GRNRVV
Sbjct: 350 AKDNGRNRVV 359


>gi|312881804|ref|ZP_07741578.1| diguanylate cyclase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370555|gb|EFP98033.1| diguanylate cyclase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 453

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 97/216 (44%), Gaps = 9/216 (4%)

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDC 108
           + ++          +  +  ++ ++   IS+++ ++  S       +Y + + + +  D 
Sbjct: 231 IAWLSWNAVVPTRLVFPQVATVTVLCALISIVVTWLIISRASRDREAYEKKLYKAATRDG 290

Query: 109 LSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+G+ NH  F+ +            + L ++  DID+FK IND +GH  GD  +      
Sbjct: 291 LTGVYNHRHFVEAASHEYQVSRYLGKPLCLLMMDIDHFKTINDTYGHQTGDDALKHFVLL 350

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                     +GR+GGEEFA     +S   A   A  +R++I+ S +       I  T+S
Sbjct: 351 CSHKLRNSDLLGRIGGEEFALLMPDTSPLTAIEFAESIRELIKTSPLETKK-AKITFTVS 409

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            G++          ++ +AD A+Y AK+ GR++V  
Sbjct: 410 IGVSAMLIDNDFECMLEQADLAMYRAKRLGRDQVQI 445


>gi|300702652|ref|YP_003744252.1| diguanylate cyclase [Ralstonia solanacearum CFBP2957]
 gi|299070313|emb|CBJ41605.1| putative diguanylate cyclase (GGDEF domain) [Ralstonia solanacearum
           CFBP2957]
          Length = 457

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 104/208 (50%), Gaps = 12/208 (5%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           + + + +    S++   + + LL+  ++ ++ + LF ++  + Q S  D L+G+ N S F
Sbjct: 241 FTVGWYVARIFSMLAPGVLVCLLVWEVT-TLYRRLFEAHVSLQQASTHDALTGIYNRSYF 299

Query: 119 ISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-M 170
                          +  S++  D+D+FK+ ND FGH  GD  +  ++  L  V      
Sbjct: 300 NEQFPRAFDEARRKAQPFSLLMIDVDHFKRYNDTFGHLKGDGCLVTIAAALEGVLRRHAG 359

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RC 228
           F+ R GGEEFA     ++ ++A +LA   R+ + + +I   + PS ++TISAG A     
Sbjct: 360 FIARYGGEEFAVVLPDATPRDALLLAESAREAVLHLRIEAPT-PSRYVTISAGCATAMPE 418

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256
               +  +I  AD  LY AK +GRN VV
Sbjct: 419 ASTSLEALIEAADATLYRAKAAGRNLVV 446


>gi|296103575|ref|YP_003613721.1| diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058034|gb|ADF62772.1| diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 566

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 93/199 (46%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+ + +   ++  ++   + +   +  D L+ L N  A          
Sbjct: 362 LALLWALFTAMLLISWLVIRRMVSNMYTLQHSLQWQAWHDPLTRLHNRGALFERAKALAA 421

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              + +   S+V  D+D FK IND FGH  GDKV++  +  +          GR+GGEEF
Sbjct: 422 QCQAQSLPFSVVQIDLDNFKSINDRFGHQAGDKVLSHAAGLIASALRKNDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G   +EA  +A  +R  I++ +I +    ++ I+ S G+  A+         +  
Sbjct: 482 CVVLPGIGLEEARAVAERIRSRIDSKEILVKKSTTLRISASMGVSCAQEKGNYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD  LY+AK+ GRN+VV 
Sbjct: 542 IADARLYLAKQRGRNQVVW 560


>gi|260767345|ref|ZP_05876284.1| sensory box/GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260617668|gb|EEX42848.1| sensory box/GGDEF family protein [Vibrio furnissii CIP 102972]
          Length = 583

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +LS +D L+ + N   F + +             LS++  D+DYFK  N
Sbjct: 401 QKLEAANQELERLSYLDSLTQVANRRRFDAQMQALWHLHAREKRPLSVMLCDVDYFKGYN 460

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD ++  ++     V   +   V R GGEEFA     +      ++A  +   
Sbjct: 461 DRYGHLQGDDILRLVAQAFNDVINRSSDCVARYGGEEFAIILPNTELAGVQLVAQRIHDR 520

Query: 203 IENSQINI-SSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +    I   SS  S +ITIS G+       ++   T++  AD ALY AK +GRN+   
Sbjct: 521 LAELAIPHQSSTVSPYITISIGVVTCIPQPEDTPETMLAWADSALYQAKANGRNQTSV 578


>gi|258514935|ref|YP_003191157.1| diguanylate cyclase with PAS/PAC sensor [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778640|gb|ACV62534.1| diguanylate cyclase with PAS/PAC sensor [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 512

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 10/182 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136
            I+ + + +       ++ L+  D L+G+ N   F       +S    YN   S++  D+
Sbjct: 328 LITFNDITKYMNMMEELNHLASRDALTGVYNRRYFAELSSLELSKSRRYNMPASLIILDL 387

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FKQINDN+GH  GD V+  ++D       +   +GR GGEEF      +  ++  +++
Sbjct: 388 DFFKQINDNYGHQAGDTVLKEIADICRKSIRSIDILGRYGGEEFVIFLPNTKLEDCRMVS 447

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           N +   I ++ I    G SI +T S G +  E    E +   +  ADQALY AK  GRN 
Sbjct: 448 NRILNNIASAVI-CYEGKSIKVTASIGTSGVEFVSDENLDHFLKTADQALYQAKLDGRNC 506

Query: 255 VV 256
           + 
Sbjct: 507 LR 508


>gi|163844421|ref|YP_001622076.1| diguanylate cyclase [Brucella suis ATCC 23445]
 gi|163675144|gb|ABY39254.1| diguanylate cyclase (GGDEF) domain [Brucella suis ATCC 23445]
          Length = 391

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS--- 130
           L++G I+     I  +   +  R++  +  D L+ L N       ++   S  + LS   
Sbjct: 197 LMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGKLLTQKKSARDGLSRDG 256

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSS 188
            ++  D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF      G+S
Sbjct: 257 FLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTS 316

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++  I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK
Sbjct: 317 KEQTDIIASRIIRQVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAK 375

Query: 249 KSGRNRVVCFSD 260
             G+NR   F +
Sbjct: 376 SKGKNRFEYFEE 387


>gi|116250265|ref|YP_766103.1| GGDEF domain-containing regulatory protein [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115254913|emb|CAK05987.1| putative transmembrane sensory box GGDEF domain protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 419

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 75/251 (29%), Positives = 117/251 (46%), Gaps = 14/251 (5%)

Query: 12  WLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL 71
           WL   +        T  +Y     S F+   + I++  L  +G  P         E+LSL
Sbjct: 166 WLARAEAPAPLLGIT-ALYTLTAISFFLCAAVLISDGKL-VLGHAP-----SNWAEDLSL 218

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKL 129
            +  I     +G +S ++ +    + +R+   +  D L+GLLN  A     G+       
Sbjct: 219 AV-CIAGMTGIGALSLALHQWRLAARHRLD--AITDPLTGLLNRRALFDQYGTRPMGTTT 275

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++ FDID+FK +ND FGH  GD+V+   + +L     T     RLGGEEF         
Sbjct: 276 AVIVFDIDHFKSVNDRFGHATGDRVLNVFAGELSAHCRTGDTAARLGGEEFVLVLKEIMP 335

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAK 248
             A + A  +R+  E  +I+I     +  T+S G+A    K     T++  AD+ALYVAK
Sbjct: 336 GRAELTAERIRRAFEAREIHIDD-EVLTCTVSVGVAPGRSKSLDFDTMLSAADKALYVAK 394

Query: 249 KSGRNRVVCFS 259
           ++GRNRV   S
Sbjct: 395 RAGRNRVELAS 405


>gi|86356126|ref|YP_468018.1| hypothetical protein RHE_CH00470 [Rhizobium etli CFN 42]
 gi|86280228|gb|ABC89291.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 392

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 71/247 (28%), Positives = 110/247 (44%), Gaps = 14/247 (5%)

Query: 12  WLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL 71
           WL   +     +P   +   +++     A    +    L   G            E+LSL
Sbjct: 139 WLARAE-----APAPLLGIAALY--TLTAVSFVLCAAVLVADGKLVLGKAPSNWAEDLSL 191

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKL 129
            I  I     +G +S ++ +    + +R+   +  D L+GLLN  A     G+       
Sbjct: 192 AI-CIAGMTGIGALSLALHQWRLAARHRLE--AITDPLTGLLNRRAVFDEYGTRPMGTTA 248

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++ FDID+FK +ND +GH  GD+VI   +D+L           RLGGEEFA        
Sbjct: 249 AVIVFDIDHFKSVNDRYGHAAGDRVITVFADELTAHCRPGDTAARLGGEEFALVLKEIMP 308

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAK 248
             A + A  +R+  E  +I I  G  +  T+S G+A  R        ++  AD+ALY AK
Sbjct: 309 GRAELTAERIRRAFEAREIPI-DGEVLKCTVSVGVAPGRSTPLDFDAMLSAADKALYAAK 367

Query: 249 KSGRNRV 255
           + GRNRV
Sbjct: 368 RGGRNRV 374


>gi|89902164|ref|YP_524635.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Rhodoferax ferrireducens T118]
 gi|89346901|gb|ABD71104.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 1169

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 87/210 (41%), Gaps = 13/210 (6%)

Query: 67  ENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-- 123
           E LS+  +     ++  Y+ +   +     + + I  L+  D  +GL N    +  L   
Sbjct: 701 ELLSITAVKENGGIVTHYVGTFMDITRRKAAEDEIRNLAFFDLQTGLPNRRLLLDRLQQA 760

Query: 124 -----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                 +  + +++  D+D FK +ND  GH  GD ++  ++ +L         V RLGG+
Sbjct: 761 LAASARHRRQGALLLIDLDNFKTLNDTLGHDKGDLLLQQVAQRLASCVHEGGTVARLGGD 820

Query: 179 EFAAAALGSSE--QEAAILANDLRKIIENS--QINISSGPSIHITISAGIAERCH-KEPI 233
           EF       SE  + AA  A  L K I  S  Q     G     T S GI      +E  
Sbjct: 821 EFVVMLENLSEHLEAAATQAETLAKRILASLKQTYSLDGYEYQSTASIGITLFSEQQETT 880

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             ++ RAD A+Y AK  GRN +  F     
Sbjct: 881 EDLLKRADLAMYQAKAVGRNTLRFFDPEMQ 910


>gi|71278229|ref|YP_271325.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71143969|gb|AAZ24442.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 1034

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 68/249 (27%), Positives = 116/249 (46%), Gaps = 25/249 (10%)

Query: 23   SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISI----TI 78
            SP  +  +++  +S++    + +  IF+++   T F   E    +   L +       T 
Sbjct: 793  SPPPWKTWWA--YSLYALLTLLVVFIFIYFR--TRFQQTEIARQKQFVLALEEQVEEKTA 848

Query: 79   SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
            SL       +   +L  +  ++  L+  D L+GL N   F   L           + LS+
Sbjct: 849  SL------NAKASDLIAANKQLEVLTYQDGLTGLYNRRYFDKQLTTEINRHYRQQQSLSL 902

Query: 132  VFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
            +  DID+FK  ND +GH  GD  +  +++ +   V        R GGEEFA     +S +
Sbjct: 903  ILCDIDHFKLFNDLYGHQQGDNCLKRVAECIGTNVARMTDANCRYGGEEFAIILPNTSVE 962

Query: 191  EAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVA 247
             + ++A  L   IEN +I +  S  S  +T++ G+     K+   +  II  AD+ALY+ 
Sbjct: 963  HSTLVAERLCFAIENMKILHEKSKTSNFVTLTIGVVTIPPKQKTSVDAIILSADKALYMG 1022

Query: 248  KKSGRNRVV 256
            KK+GRN+VV
Sbjct: 1023 KKNGRNKVV 1031


>gi|212635204|ref|YP_002311729.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212556688|gb|ACJ29142.1| GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 347

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 10/178 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDN 145
           L    + +  +   D L+ L N  AF   + S+ +         S++  DID+FK+ ND 
Sbjct: 168 LKSEMSELRSVVMTDQLTSLNNRRAFDEEVISHIDTFNQKEFESSLLVVDIDHFKKFNDV 227

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH +GDKV+ +++  L        FV R GGEEF      +   EA I+AN+LR+ I  
Sbjct: 228 HGHLIGDKVLTYVAQALKQSVKGDDFVARYGGEEFVILLPNTGIDEAKIVANNLRQKIAK 287

Query: 206 SQINISSGPSI---HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + I     +   +IT+S G A   +++   +   RAD+ALY AK +GRN V+  S+
Sbjct: 288 RNLTIGKEKKLPLGNITVSVGCASLKNEDSKDSYFIRADEALYRAKSAGRNCVMVESE 345


>gi|212633062|ref|YP_002309587.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212554546|gb|ACJ27000.1| GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 395

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 127/279 (45%), Gaps = 37/279 (13%)

Query: 5   LKDFLSIWL--CHEKNLESFSPHTFMIYFSIFFSIFIATV------IFIANIFLFYIGLT 56
              F  IW    ++  ++++ P    +        ++  +      I+ AN+    I +T
Sbjct: 128 AAAFAWIWGNTQYKSAIDNYLPSMITMEIRTLAPFYLGAMLVFVRGIWQANLVNTAIFIT 187

Query: 57  -PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH 115
              + +  ++ E LS V +SIT +L + YI    L  L  SY     L+  D L+GL + 
Sbjct: 188 LALWAIHSLMPELLS-VSVSIT-ALAIVYI----LTVLTDSY----FLAYRDELTGLASR 237

Query: 116 SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            A  + + S   K S+   DID+FK+ ND +GH VGD+V+  ++ ++  V        R 
Sbjct: 238 RALYNLVLSLGRKYSVAMLDIDHFKKFNDTYGHDVGDQVLKLVASKISQV-RGGGKAFRY 296

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-----------------SSGPSIHI 218
           GGEEF                 ++R+IIE+  I +                 S   ++++
Sbjct: 297 GGEEFTIVFSRKDTSSILHFLEEVREIIEDYDITLRNEQRKQQTKAKRGKAQSQSKTVNV 356

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           TIS G++E  H E     + +ADQALY AKK GRN+V  
Sbjct: 357 TISIGVSEHQHGETFEQTLKKADQALYRAKKKGRNQVCV 395


>gi|169826288|ref|YP_001696446.1| transmembrane protein [Lysinibacillus sphaericus C3-41]
 gi|168990776|gb|ACA38316.1| probable transmembrane protein [Lysinibacillus sphaericus C3-41]
          Length = 520

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 93/203 (45%), Gaps = 29/203 (14%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           + L+Y+L+ +LS +   +T                          S +D L+G+ N    
Sbjct: 339 HSLKYVLIRSLSFLHGQVTFF---------------------KDQSTVDPLTGVTNRRTM 377

Query: 119 ISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            + L  + E     +I+  D+D+FK +ND +GH VGDKV+ FL+  +  V        R 
Sbjct: 378 DAMLAEWFENRVPHAIILLDLDHFKSVNDTYGHAVGDKVLQFLAKHMQSVAREGDVCCRY 437

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPIS 234
           GGEEF      ++  EA  +A  LR  +  +     S     +T+SAGIA          
Sbjct: 438 GGEEFVMLLPNTTVIEAEQVAEQLRGNLAET----DSPCGRPVTLSAGIALYPEMAATPE 493

Query: 235 TIIYRADQALYVAKKSGRNRVVC 257
           T+I  AD ALY AK++GRN+V  
Sbjct: 494 TLIEAADGALYEAKQAGRNQVKV 516


>gi|218779529|ref|YP_002430847.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01]
 gi|218760913|gb|ACL03379.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01]
          Length = 470

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 12/178 (6%)

Query: 88  SILKELFISYNR---ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDID 137
           S+++++  + +R   + + + +D L+ + N  A+   L     +        S++  D+D
Sbjct: 289 SLMRQVGEAQSRARILEEQAMVDALTEIPNRRAYEERLAQEWSRYQRSGSAFSMLMVDLD 348

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK IND FGH VGD  +  +   L     +  F+ R GGEEF      ++ + A +   
Sbjct: 349 RFKSINDTFGHAVGDTCLQGVVSLLKPNLRSSDFLARFGGEEFVIILPDTTREGAVMAGE 408

Query: 198 DLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            LRK +E +   +  G  +++TIS G    R   +  + +  R D+A+Y AK+SGRNR
Sbjct: 409 KLRKKVEKANF-VYDGEKVNVTISVGGTKVREADKDTNDLFIRLDEAMYQAKESGRNR 465


>gi|119946359|ref|YP_944039.1| diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37]
 gi|119864963|gb|ABM04440.1| diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37]
          Length = 591

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 80/187 (42%), Gaps = 12/187 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           KE       ++ L+  D L+GL N    I  L            + +++F D+D+FK IN
Sbjct: 145 KEKAKLAEELNDLAFYDTLTGLPNRRLLIDRLHHALASNVRQGCESAVMFIDLDHFKDIN 204

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ--EAAILANDLRK 201
           D  GH VGD ++   + +L         V RLGG+EF        E   EAA  A  +  
Sbjct: 205 DTLGHEVGDLLLIQTAQRLESCLRKGDTVARLGGDEFMLILENLDENPIEAATKAKAIAD 264

Query: 202 II--ENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCF 258
            I  E ++         H T+S G     H       +I +AD A+Y AK++G N +  F
Sbjct: 265 KILAELNKPYQLDMHKCHSTVSIGAVFFDHQGNTAEDLIKQADIAMYQAKQAGGNLIRFF 324

Query: 259 SDIENNT 265
           +     +
Sbjct: 325 NPKMQES 331


>gi|108804381|ref|YP_644318.1| diguanylate cyclase/phosphodiesterase [Rubrobacter xylanophilus DSM
           9941]
 gi|108765624|gb|ABG04506.1| diguanylate cyclase/phosphodiesterase [Rubrobacter xylanophilus DSM
           9941]
          Length = 762

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 16/207 (7%)

Query: 71  LVIISITISLLLGYISG--SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           ++I ++ +  + G +      L E      R+ Q +  D L+GL N + F   L     +
Sbjct: 293 VLIFALAVIRIRGIVVALLRTLSERERLQERLEQQALHDPLTGLANRALFSDRLAHAASR 352

Query: 129 --------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   L+++  D+D FK +ND+ GH VGD ++  ++ ++         V RLGG+EF
Sbjct: 353 ANPLDCGRLAVLMLDLDGFKSVNDSLGHEVGDALLVSVAGRIRACVRPSDTVARLGGDEF 412

Query: 181 AAAALGSSEQEAA-ILANDLRKIIENSQINISSGPSIHI-TISAGIAERCHKEPISTIIY 238
           A      S+  AA  +A  +   ++      S G    +   S G+A    +E   +++ 
Sbjct: 413 AVLIEEISDVGAAVRVAERI---LDRLGEPYSVGGVGRVAAASVGVAFGPARE-AKSLLR 468

Query: 239 RADQALYVAKKSGRNRVVCFSDIENNT 265
            AD A+YVAK+ G+ R   F     N 
Sbjct: 469 DADAAMYVAKERGKGRYEVFEPRMRNA 495


>gi|330975799|gb|EGH75865.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 748

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
            S L+E       ++ ++  D L+ L N +  ++ L +         E+ +++F D+D F
Sbjct: 300 QSRLEERERISEELTYIAFHDELTSLFNRAYLMNELTTAFEIRDPRYERATVLFLDLDGF 359

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
           K +ND+ GH  GDK++  ++++L     +   + R+GG+EFA   +G  + + A  +A  
Sbjct: 360 KVVNDSMGHLAGDKLLKAVANRLQTCVRSNDVLARIGGDEFAILLMGKDQPETAVKMAER 419

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           +   +  + I I +   I I+ S GI            ++  AD A+Y AKK GR R   
Sbjct: 420 IVSQLHTA-IQIEN-QDIFISCSIGIVTAGDSHTKPEELLRDADVAMYSAKKQGRGRWSI 477

Query: 258 FSDIENNTC 266
           F+       
Sbjct: 478 FNTSMREAA 486


>gi|119493187|ref|ZP_01624062.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensors [Lyngbya sp. PCC 8106]
 gi|119452752|gb|EAW33929.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF &  EAL
           domains) with PAS/PAC sensors [Lyngbya sp. PCC 8106]
          Length = 1090

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 90/191 (47%), Gaps = 13/191 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDY 138
           G  + +   + +++   +  D L+ L N + F++ L            E  +++F D+D 
Sbjct: 633 GEDITKRKQAEDQLRHHAFYDTLTNLPNRALFLNRLAHSIKQVQQTSGELFAVLFLDLDN 692

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAN 197
           FK++ND+ GH +GD+++  ++ +L     +   + RLGG+EF        +  +A  +A 
Sbjct: 693 FKRVNDSLGHQIGDQLLIAIARRLEGCLRSRDTLARLGGDEFTILLEQINNITDAIKVAR 752

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRV 255
            L + +     N+S G  +   +S GIA  C  H++    ++  AD A+Y AK+ G+   
Sbjct: 753 HLHQQL-MLPFNLS-GNEVFTNVSIGIALSCSRHEQHPEELLQNADSAMYRAKEMGKGAY 810

Query: 256 VCFSDIENNTC 266
             F    +   
Sbjct: 811 AVFDTRMHRQA 821


>gi|227822252|ref|YP_002826223.1| GGDEF family protein [Sinorhizobium fredii NGR234]
 gi|227341252|gb|ACP25470.1| GGDEF family protein [Sinorhizobium fredii NGR234]
          Length = 356

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 59/183 (32%), Positives = 98/183 (53%), Gaps = 8/183 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEKL----SIVFFDIDYFKQIN 143
           ++ +    +   +++  D L+ L N  AF  +L +   NE+L     ++  DID+FK++N
Sbjct: 163 MEAIRQELDEYKRIANTDSLTRLGNRRAFDETLAAVYNNEQLRNYTGLLVVDIDHFKKVN 222

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+FGHPVGDK+++ +   +        FV R GGEEFA     S+++E    A+ +R ++
Sbjct: 223 DSFGHPVGDKILSTVGTVIRANLRRDAFVARTGGEEFAVILSDSTQEECMQAADRIRSVL 282

Query: 204 ENSQI-NISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            N+   N  +G +   IT+S G+      +    + ++AD ALY AK SGRNR V F + 
Sbjct: 283 ANTPFKNSKTGVNYGPITLSVGVCMATAADDPLDLYHKADIALYAAKNSGRNRTVLFEEG 342

Query: 262 ENN 264
              
Sbjct: 343 MRK 345


>gi|289678106|ref|ZP_06498996.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 748

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
            S L+E       ++ ++  D L+ L N +  ++ L +         E+ +++F D+D F
Sbjct: 300 QSRLEERERISEELTYIAFHDELTSLFNRAYLMNELTTAFEIRAPRYERATVLFLDLDGF 359

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
           K +ND+ GH  GDK++  ++++L     +   + R+GG+EFA   +G  + + A  +A  
Sbjct: 360 KVVNDSMGHLAGDKLLKAVANRLQTCVRSNDVLARIGGDEFAILLMGKDQPETAVKMAER 419

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           +   +  + I I +   I I+ S GI            ++  AD A+Y AKK GR R   
Sbjct: 420 IVSQLHTA-IQIEN-QDIFISCSIGIVTAGDSHTKPEELLRDADVAMYSAKKQGRGRWSI 477

Query: 258 FSDIENNTC 266
           F+       
Sbjct: 478 FNTSMREAA 486


>gi|238756867|ref|ZP_04618055.1| Response regulator receiver modulated diguanylate cyclase [Yersinia
           aldovae ATCC 35236]
 gi|238704697|gb|EEP97226.1| Response regulator receiver modulated diguanylate cyclase [Yersinia
           aldovae ATCC 35236]
          Length = 309

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 11/175 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145
           L    + + QL  +D L+ + N   F   L    +        LS++  D+D+FK+ ND 
Sbjct: 126 LKAQSDLLRQLVYLDGLTEVYNRRYFDEKLEQEWKLANRNSLPLSLIMIDVDFFKKYNDL 185

Query: 146 FGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KII 203
           +GH  GD  +  ++  +          V R GGEEF      +    A  +A  +R +++
Sbjct: 186 YGHQAGDDCLRRVAKIIRDTLKRPTDLVARYGGEEFVCLLPNTGLVGAMEVAEAIRLQLL 245

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E    ++ S  S  ++IS G+   E       +T++ +AD  LY AK++GRN+  
Sbjct: 246 EQEIPHVGSTVSPFVSISLGVCCKETQSDGMPTTLLLQADLQLYQAKRNGRNQTC 300


>gi|90422286|ref|YP_530656.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
 gi|90104300|gb|ABD86337.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
          Length = 501

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 62/218 (28%), Positives = 95/218 (43%), Gaps = 17/218 (7%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           +  +   +  E I +  + LV+ S    + +  I    +     +  R+ +LS  D L+G
Sbjct: 282 WRNVLSLWRKEAIRLGAILLVLASFVAGVTIFLI--REIDRRARAEQRLEELSVTDPLTG 339

Query: 112 LLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV- 163
           L N   F                 ++++  D D+FK  ND+FGH  GD+++  ++  +  
Sbjct: 340 LTNRRKFDAAIETEWQRAQRQQTPVALLMIDADHFKGYNDSFGHQAGDQMLIGIAVCIAD 399

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
            V        R GGEEFA    G S   A  +A  +R  +E   I+        +TIS G
Sbjct: 400 SVHRAGDCAARFGGEEFAVLLPGLSAYAALSVAETIRGKVEQWSID-----QTGVTISVG 454

Query: 224 IAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            A        P S ++  AD+ALY AK SGRNR V  S
Sbjct: 455 TASITPGPATPWSVLVEAADKALYAAKASGRNRSVVAS 492


>gi|300696970|ref|YP_003747631.1| signal transduction ggdef domain transmembrane protein [Ralstonia
           solanacearum CFBP2957]
 gi|299073694|emb|CBJ53214.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum CFBP2957]
          Length = 507

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 98/233 (42%), Gaps = 20/233 (8%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           + +++A      +I+  +       GL         LV +   +++ L Y     L++  
Sbjct: 264 YPLYVAVGAATEDIYANWTSRAWAIGL---------LVAVFNLVTMALAYQFAKQLEKRL 314

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFG 147
            +  R ++L+  D L+ L N  A  + L    +        +S++  D+D FK  ND++G
Sbjct: 315 AAGRRHAELAVTDALTDLPNRRALDAGLDREWKRALRERWPVSVLMIDVDAFKPYNDHYG 374

Query: 148 HPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  GD  +  ++  +            R GGEEF      +    A  +A  +R+ +   
Sbjct: 375 HLGGDTALKAVARCIQAKACRPGDLAARYGGEEFCVVLPHTDLAGAVAVAEHIRQAVLAL 434

Query: 207 QINISSGPSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRVV 256
            I  + GP+  +++S G+A        +   T+   AD  LY AK  GRNR +
Sbjct: 435 HIPHAQGPAGILSVSIGVASGIPALAADRPETLTQAADTELYRAKTQGRNRTM 487


>gi|254465870|ref|ZP_05079281.1| sensory transduction histidine kinase [Rhodobacterales bacterium
           Y4I]
 gi|206686778|gb|EDZ47260.1| sensory transduction histidine kinase [Rhodobacterales bacterium
           Y4I]
          Length = 600

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 79/169 (46%), Gaps = 8/169 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHP 149
            +++   S  D L+GL N      SL  +         +LS++  D+D+FK+ NDN GH 
Sbjct: 399 RDQLHDQSVRDPLTGLFNRRHMTESLRKFLSSSALNCARLSVIAVDVDHFKKFNDNHGHD 458

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  +S  L           R GGEEF     G + ++A   A  LR+ +E   + 
Sbjct: 459 AGDMVLRAVSTVLDKACDGSEAACRPGGEEFTVILPGVTPEDALTRAELLRQAVEEITVR 518

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
                   ITISAG+A    H      ++  AD+ALY AK  GRN+V  
Sbjct: 519 YGEKTLPQITISAGVAHYPSHGLLPQDLLRAADEALYAAKAKGRNQVCV 567


>gi|192359424|ref|YP_001980711.1| putative GGDEF domain-containing protein [Cellvibrio japonicus
           Ueda107]
 gi|190685589|gb|ACE83267.1| putative GGDEF domain protein [Cellvibrio japonicus Ueda107]
          Length = 526

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 10/183 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + +   +  R  +L+  D L+GL N  A  + L  +       +  L+++  D+D FKQ
Sbjct: 340 DVTQRKKAEERTRELAETDSLTGLTNRPAAEAILDQWLIQAAATSRGLAVMMIDLDRFKQ 399

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLR 200
           IND++GH  GD+V+  ++++L  +      V RLGG+EF      +   +    +A  + 
Sbjct: 400 INDSYGHDAGDQVLRVVANRLRKLVRDSDLVARLGGDEFLIVLKQTDNPDVDKRIAQQIL 459

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              + + I I       + IS GIA    H +   ++   ADQALY  K+ G+N    + 
Sbjct: 460 DA-QAAPIEIQPQVLETVGISIGIAHYPAHGDNPQSLRRHADQALYSVKRRGKNNYAIYD 518

Query: 260 DIE 262
             +
Sbjct: 519 PED 521


>gi|152991339|ref|YP_001357061.1| hypothetical protein NIS_1598 [Nitratiruptor sp. SB155-2]
 gi|151423200|dbj|BAF70704.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 590

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 92/182 (50%), Gaps = 10/182 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQI 142
            + + + S   + +++  D L+G+ N +           +   +E L +   DID+FK+I
Sbjct: 412 DITDTYRSMEELQEIAYKDPLTGVYNRTLLQDIIHNILRIKRKDEHLILALVDIDHFKKI 471

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH  GD+V+ F++  +     +  +V R+GGEEF       S ++  ++   +R+ 
Sbjct: 472 NDEFGHDTGDEVLQFVAQTIKKRLRSEDYVFRIGGEEFLIVMKTRSIEKVLLILQSIRRY 531

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             +        P   +TIS G+ E    E       RAD+ALY AK+SGRNR++ +  +E
Sbjct: 532 FASHPAQKLKKP---VTISIGVTEYKPYESFKQAFKRADEALYEAKRSGRNRLI-YKGVE 587

Query: 263 NN 264
           ++
Sbjct: 588 DD 589


>gi|83745662|ref|ZP_00942720.1| Sensory box/GGDEF family protein [Ralstonia solanacearum UW551]
 gi|207739491|ref|YP_002257884.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
 gi|83727739|gb|EAP74859.1| Sensory box/GGDEF family protein [Ralstonia solanacearum UW551]
 gi|206592870|emb|CAQ59776.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
          Length = 797

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136
            +S + + +   +  R+  L+  D L+GL N S FI+ L S  E+       L++ F D+
Sbjct: 340 MLSFADITDFKRAEQRLRHLASHDALTGLTNRSFFIAHLDSAIERARDESRELALFFLDL 399

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAIL 195
           D FK +ND  GH  GD ++   + +L    G    + RLGG+EF        E    A L
Sbjct: 400 DRFKSVNDTAGHACGDTLLQSAAARLTDCIGPGDVIARLGGDEFVILIEQRVEGMRIAQL 459

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           A  L   +     +  +G   ++ +S G+A   H     + ++  AD A+Y AK++GRNR
Sbjct: 460 AERLLAAMRE-PFDTVNG-RYYLGVSIGVALYPHDGISGTDLLRSADAAMYRAKQNGRNR 517

Query: 255 VVCFS 259
              ++
Sbjct: 518 AQFYT 522


>gi|309779272|ref|ZP_07674034.1| sensory box protein/response regulator [Ralstonia sp. 5_7_47FAA]
 gi|308921830|gb|EFP67465.1| sensory box protein/response regulator [Ralstonia sp. 5_7_47FAA]
          Length = 864

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 73/186 (39%), Gaps = 11/186 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
           G  L +       I + +  D L+GL N   F   L            +++++  D+D F
Sbjct: 411 GRDLSDRMAFEATIWKQANFDALTGLPNRQMFHERLAQEASEPGRIGRRMALMLIDLDRF 470

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND+ GH  GD ++     ++         V RLGG+EF          +A  +    
Sbjct: 471 KEVNDSLGHDRGDTLLIEAGKRIGSCVRQSDTVARLGGDEFTVILPNVD--DAESVERIA 528

Query: 200 RKIIENSQINISSGP-SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           R II         G     I+ S G+         +  +   ADQA+Y AK +GRNR   
Sbjct: 529 RTIIGKLAEPFKLGADEAFISASVGVTFYPDDAHDLDVLFKNADQAMYAAKNAGRNRFSY 588

Query: 258 FSDIEN 263
           F     
Sbjct: 589 FKPDMQ 594


>gi|254517292|ref|ZP_05129349.1| sensory box/ggdef domain protein [gamma proteobacterium NOR5-3]
 gi|219674130|gb|EED30499.1| sensory box/ggdef domain protein [gamma proteobacterium NOR5-3]
          Length = 209

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 9/180 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           I  + + +  +  + + +L+  D L+G+ N           +         LS++  DID
Sbjct: 29  IFLTDISDRKLMEDELRELTLHDPLTGVANRRLLQDEGQKELQRSQRTGAPLSMMAVDID 88

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK +ND +GH +GD  +  +++    V      V R GGEEF      +S ++A  LA 
Sbjct: 89  FFKAVNDRYGHHIGDLALKKVAELCQSVTREYDLVSRTGGEEFTVLLPHTSLEQAHALAE 148

Query: 198 DLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +R  I  S   + +   I +T+S G+ A     + I  +   AD ALY AK +GRNRV+
Sbjct: 149 RMRCAIAES-CAVLNEHEIKLTVSIGVAALLSAHQSIEELSQLADDALYRAKNAGRNRVI 207


>gi|217963666|ref|YP_002349344.1| ggdef domain protein [Listeria monocytogenes HCC23]
 gi|217332936|gb|ACK38730.1| ggdef domain protein [Listeria monocytogenes HCC23]
 gi|307571759|emb|CAR84938.1| GGDEF domain protein [Listeria monocytogenes L99]
          Length = 357

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 109/233 (46%), Gaps = 11/233 (4%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           F I+   ++ I       I L      E +   N+++ ++   I+L++G +S  ++  + 
Sbjct: 126 FKIWGVFILNIIACSFVVINLHLILARESLFWINMTIFVL---IALVIGAVSAGLMSNMI 182

Query: 95  IS---YNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFG 147
            S   + +  Q S +D L+ L N   F       + S + +++++  DIDYFK IND +G
Sbjct: 183 KSKQLFQKYEQDSTLDYLTKLSNVRQFDEKINHVMDSGSRQVTLMLIDIDYFKNINDTYG 242

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD ++  L+  L           R GGEEF+   L  S +E   +A  +RK  E   
Sbjct: 243 HDAGDAILKQLAVILKASTTDGSEAFRNGGEEFSIVLLDCSIEEGNKVAEQVRKETEEHD 302

Query: 208 INISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFS 259
             I  G  + ITIS G++        S  +   AD+ALY AK +GRNRV    
Sbjct: 303 FVIPGGQIVKITISVGVSSSKDGANTSEGLFKSADEALYKAKLTGRNRVCIAD 355


>gi|15964712|ref|NP_385065.1| hypothetical protein SMc00038 [Sinorhizobium meliloti 1021]
 gi|15073890|emb|CAC45531.1| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021]
          Length = 772

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 12/181 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIV-FFDIDYFKQIND 144
           E   + +RI  ++  D L+GL N   F   +          ++ +++ F D+D FK IND
Sbjct: 332 ERKRAEDRIGFMAHHDALTGLPNRVLFEEQVAGMLEEIRERDQWAVLAFLDLDDFKLIND 391

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL--ANDLRKI 202
           + GH  GD+++  ++ ++         V R+GG+EF     G  ++   +L    D+R  
Sbjct: 392 SLGHATGDELLKIVAGRMRAAVRRSDSVVRVGGDEFIILLNGLPKERDVVLSRLEDIRTA 451

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           I    + +  G S+ ++ S G+A      +    ++  AD A+Y AK+ GRN +  F++ 
Sbjct: 452 IA-MPVQL-QGRSLQVSCSMGVACFPNQGKTAGELLANADMAMYRAKELGRNNIQVFTEE 509

Query: 262 E 262
            
Sbjct: 510 M 510


>gi|120554724|ref|YP_959075.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei
           VT8]
 gi|120324573|gb|ABM18888.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei
           VT8]
          Length = 574

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           + + +   +  +I QL+  D L+G+ N       L             L+++F D+D FK
Sbjct: 389 TDITQNRKNEEQIRQLAYYDALTGVPNRRLLEDRLDHAIRHAHRKEMLLAVMFMDLDRFK 448

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
           ++ND  GH VGD ++   + ++         + RLGG+EF        +  +   +A+ L
Sbjct: 449 EVNDTLGHAVGDDLLLQFTARVKDCLREDDTLARLGGDEFIVLLPEMEQLSDVFAVADRL 508

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            ++  N +    +G  I++  S GI+        +  +I  AD A+Y AK+ GRNR   F
Sbjct: 509 IEV--NKRPYQINGNHINVGSSIGISLYPEDGTTVQELINGADIAMYRAKRDGRNRYKLF 566

Query: 259 S 259
           +
Sbjct: 567 A 567


>gi|311694391|gb|ADP97264.1| sensory box/GGDEF family protein [marine bacterium HP15]
          Length = 809

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 11/188 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
            I G  +        ++ + +  D L+GL N    +  L          +  + ++F D+
Sbjct: 361 LILGEDISIRKRYEQQLLRQANYDILTGLPNRMLALDRLKLALAQARRESTLVGVMFLDL 420

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AIL 195
           D FK IND  GH  GD ++   + ++         V RLGG+EF     G +  EA + +
Sbjct: 421 DNFKHINDTLGHDAGDNLLIEAARRISSCLRGTSTVARLGGDEFLVILPGLTGPEASSQV 480

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNR 254
           A  + K    S   I +G  + +T S GIA        S T++  AD A+Y AK  G++ 
Sbjct: 481 AERILKTF--SPPYILNGQEVFVTTSIGIAIFPTDSDNSGTLLQHADAAMYQAKHKGKSS 538

Query: 255 VVCFSDIE 262
              F+   
Sbjct: 539 FAHFAPEM 546


>gi|330951990|gb|EGH52250.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 530

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 90/205 (43%), Gaps = 20/205 (9%)

Query: 81  LLGYISGSILKE---------LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124
           L+G+I   I  E         L      +  ++  D L+GL N   F             
Sbjct: 301 LIGHIHSRIRAEDQLLDSQAALIQLNQHLELIASEDKLTGLANRRRFDQFLEVEFKRARR 360

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAA 183
               LS++  D D+FK+ ND++GH  GD+ +  L+  +   +        R GGEE A  
Sbjct: 361 ERSLLSLILIDADHFKRYNDHYGHLAGDECLIALARVVEQFIRRPSDVAARYGGEEIAVV 420

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRA 240
             G+ E  A  +A ++ + I + QI   + P   +TIS G+A     +       +I  A
Sbjct: 421 LPGTDESNARQVAENILQAIRDEQIEHPASPFGIVTISLGVATFVGTDRQLDQRGLIELA 480

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D+ALY AK  GRNRV   S+I   T
Sbjct: 481 DRALYAAKSQGRNRVNVASEIATGT 505


>gi|297530367|ref|YP_003671642.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. C56-T3]
 gi|297253619|gb|ADI27065.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. C56-T3]
          Length = 705

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 84/209 (40%), Gaps = 6/209 (2%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           E++ +E     II    +L    ++   + E      ++ QL+  D L+G+ N S F   
Sbjct: 238 EWVWMEAQGKAIIDEAGTLDCVIVTVKNISERKRYEEKLRQLAYFDSLTGIANRSYFERH 297

Query: 122 LGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           +          ++ + D D FK IND+F H  GD  +     ++        F  R+GG+
Sbjct: 298 IHELIASQTPFALCYLDFDKFKWINDHFSHQAGDYFLREAVKRVERALRPGDFFARIGGD 357

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTII 237
           EF       ++ E   LA  L       +        I  T+S GIA        I  ++
Sbjct: 358 EFVLLLPNITKTEMTALAERLVSSF--HEPFYYEKQLIQSTLSIGIAFFPKDSDRIEQVM 415

Query: 238 YRADQALYVAKKSGRNRVVCFSDIENNTC 266
             ADQALY  K+ GRN    +   E+   
Sbjct: 416 KYADQALYEVKERGRNGYAFYRPTEHRQA 444


>gi|225872196|ref|YP_002753651.1| sensory box-containing diguanylate cyclase [Acidobacterium
           capsulatum ATCC 51196]
 gi|225792180|gb|ACO32270.1| sensory box-containing diguanylate cyclase [Acidobacterium
           capsulatum ATCC 51196]
          Length = 627

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 59/182 (32%), Positives = 87/182 (47%), Gaps = 10/182 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           + +  +Y  +  L+ ID L+G+ N   F   L              +++  D+D+FK  N
Sbjct: 432 ERMQTAYLELQALAEIDALTGVANRRHFDKVLDAEWKRAIRTGAPTALLLIDVDWFKNYN 491

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD  +  ++  + V    +   V R GGEEFA     + E  AA L   +R+ 
Sbjct: 492 DIYGHLEGDVCLRSIATWISVCIHRSTDLVARFGGEEFALILPDTDEAGAAALGERIREE 551

Query: 203 IENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           IE  ++        HITISAG A          + +I  AD+ALY AK SGRNRV+  SD
Sbjct: 552 IEARKVVHRGNEYGHITISAGCASLMPMRGTSGTLLIDAADKALYRAKSSGRNRVMRASD 611

Query: 261 IE 262
            +
Sbjct: 612 EQ 613


>gi|110834979|ref|YP_693838.1| GGDEF domain-containing protein [Alcanivorax borkumensis SK2]
 gi|110648090|emb|CAL17566.1| GGDEF domain protein [Alcanivorax borkumensis SK2]
          Length = 409

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 78/256 (30%), Positives = 119/256 (46%), Gaps = 32/256 (12%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG-YISGSILKE 92
           F+    ++ I IA   +F + L P  G        L LV ++ T + L G Y+   +L++
Sbjct: 149 FYVALGSSAIMIA-CMIFSLQLNP--GRYPFEPTTLVLVSLAFTCTGLFGQYVYERLLRQ 205

Query: 93  -------LFISYNRI-------SQLSRIDCLSGLLNHSAFISSLGS-----------YNE 127
                  LF   N +          + +D ++G +N     S L               E
Sbjct: 206 YFLSEHVLFQHRNELHSANLVLENQATVDGMTGCINRRGMESRLNHLYHQLKQKTPDAPE 265

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ-LVVVFGTPMFVGRLGGEEFAAAALG 186
           +++++ FDID+FKQ ND +GHP GD+ +  ++   L +V     FV R GGEEF      
Sbjct: 266 RITLILFDIDFFKQYNDTYGHPAGDECLKKVASVPLGMVQSDTDFVARYGGEEFVITLAD 325

Query: 187 SSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQAL 244
           SS  +A + A  +R  +E   I  S    S  +TIS G+A    + E    ++  AD+AL
Sbjct: 326 SSFNDALVFAERMRNRVEQLGIPHSGSRISQVVTISVGVACSDSNAENGGQLLKMADEAL 385

Query: 245 YVAKKSGRNRVVCFSD 260
           Y AK SGRNRV   S+
Sbjct: 386 YQAKGSGRNRVALMSN 401


>gi|26989136|ref|NP_744561.1| diguanylate cyclase [Pseudomonas putida KT2440]
 gi|24983971|gb|AAN68025.1|AE016435_2 GGDEF family protein [Pseudomonas putida KT2440]
          Length = 544

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 66/235 (28%), Positives = 108/235 (45%), Gaps = 22/235 (9%)

Query: 40  ATVIFIANIFLFYIGLT---PFYGLEYILVENLSLVIISITISLLLGYISGSILKE---- 92
           A +  + ++ L+++  T   P + L                  +   Y   + LK     
Sbjct: 314 APLALVGSLLLWWLARTIARPLWKLAAGARTMDRAGTAEHLHQVRAWYFEAAELKRALLF 373

Query: 93  -LFISYNRISQL---SRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDN 145
            L +   RI +L   ++ D L+GL N  +    +S L +   + + +  DID+FK+IND+
Sbjct: 374 SLNLLQERIGRLNRDAQTDPLTGLGNRRSLEISLSLLEAEKREFAAIALDIDHFKRINDS 433

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD+V+  L++ +         + R GGEEF     G++   AA +A  LR  ++ 
Sbjct: 434 HGHDVGDQVLRQLAELMRRCCREGDLLCRTGGEEFLILLPGATLNVAAAVAERLRVTVQE 493

Query: 206 SQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +         +TIS G+       H EP+S +   AD+ALY AK+ GRNRV  
Sbjct: 494 MPVESVGA----VTISLGVTHWDGETHGEPMSAL-GEADRALYRAKQEGRNRVAF 543


>gi|154244359|ref|YP_001415317.1| diguanylate cyclase [Xanthobacter autotrophicus Py2]
 gi|154158444|gb|ABS65660.1| diguanylate cyclase [Xanthobacter autotrophicus Py2]
          Length = 866

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 83/190 (43%), Gaps = 9/190 (4%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NE 127
           ++ +S +L       L  + +   ++   +  D L+GL N      +L            
Sbjct: 657 ALQLSTMLAEQVSLALANIDL-REQLRGQALRDPLTGLGNRRFVEDALALQIAGVTGDGR 715

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            LS+   D+D+FKQ+ND   H  GD V+  + D L         + R GGEEF      +
Sbjct: 716 SLSVALIDLDHFKQVNDTHSHEAGDAVLRAIGDVLRANIRKGDIIARYGGEEFLLLLPNT 775

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYV 246
           +   A  +AN L + I + ++  S G    IT S G+A           +I  AD ALY 
Sbjct: 776 APDGALAVANHLLQAIRSLRVLWSGGVLEGITASIGVATFPDHVSRPDDLIVSADAALYR 835

Query: 247 AKKSGRNRVV 256
           AK  GR++VV
Sbjct: 836 AKALGRDQVV 845


>gi|148265765|ref|YP_001232471.1| diguanylate cyclase [Geobacter uraniireducens Rf4]
 gi|146399265|gb|ABQ27898.1| diguanylate cyclase with GAF sensor [Geobacter uraniireducens Rf4]
          Length = 681

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 13/192 (6%)

Query: 87  GSILKELFISYNR---ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
            S++ E  +   +     +LS  D L+GL N     + L         +   L+ +F D+
Sbjct: 482 ASLMIERTLVLEQSSMFEKLSVTDPLTGLYNRRFLKNRLEEELNRSVRHGLNLTFLFIDL 541

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK  ND  GH  GD+ +   +D +         V R GGEEF A   G+S++E+ ++A
Sbjct: 542 DYFKIYNDFCGHLAGDEALKKTADIIKASLRDMDIVARYGGEEFCAILPGTSKKESIVVA 601

Query: 197 NDLRKIIENSQINISSGPSIH-ITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
             +R  IE           +  +T S GIA         +++++ AD ALY AK +GRN+
Sbjct: 602 ERIRVGIEKEIFPEEESLPLGKLTASLGIASFPEDGHTFTSLVHAADVALYEAKANGRNQ 661

Query: 255 VV-CFSDIENNT 265
           ++  +  + N++
Sbjct: 662 IIAAYPSMPNDS 673


>gi|307822135|ref|ZP_07652367.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
 gi|307736701|gb|EFO07546.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
          Length = 394

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 109/232 (46%), Gaps = 11/232 (4%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           S  +  ++ +    + ++     YGL      N +   I     + L +  G +L   + 
Sbjct: 158 SFAVVAMMLLLRAAIVFLSPANTYGLFSQAPINPATFFIGSMAQMCLAF--GFVLMLNYR 215

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148
               + +L+  D L+G LN  +        + +       L+I+  D+D+FK IND +GH
Sbjct: 216 LSADLQKLALSDALTGALNRRSLEQEAARLSARCTRTGDALAIMMIDVDHFKSINDRYGH 275

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           PVGD+V+  L+        +  +  R GGEEF      + E++A  LA+ LR+      +
Sbjct: 276 PVGDEVLRRLAAVAQKTIRSDDYFARYGGEEFCILLPSTIEKDAWTLADRLRQNYAALIM 335

Query: 209 NISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               G  +  TIS G+++  H     S+++  ADQA+Y AK+ GRNRVV  S
Sbjct: 336 EF-GGDVLRSTISIGVSDSIHAGLEFSSLVAAADQAMYRAKQEGRNRVVMHS 386


>gi|301025565|ref|ZP_07189090.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
 gi|300395946|gb|EFJ79484.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
          Length = 346

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 69/278 (24%), Positives = 120/278 (43%), Gaps = 34/278 (12%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGL-------------TP 57
           + L     L S+  + F+ Y+++ F+  +  ++ ++ +   Y                TP
Sbjct: 72  VLLVALSLLWSWCSYHFIAYWTLQFAYPLCVLLMLSGVVALYFHTPSLLAFVIPLWFTTP 131

Query: 58  FYGLEYILVENLSLVIISITISLLL-------------GYISGSILKELFISYNRISQLS 104
              L      N+   ++    SL L              ++  S   +L    NR+  L+
Sbjct: 132 IASLMLNQQINIHFAVVWCIFSLALYGGRLILLRWFEEAWVQNSYNNQLI---NRLDALA 188

Query: 105 RIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
             D L+G+ N  A  S L          +++  D+D+FK+ ND +GHP GD+ +  ++D 
Sbjct: 189 HRDPLTGIANRRAMNSILHDAMDNGGSFALIMLDVDFFKRYNDTYGHPAGDRCLIQVADA 248

Query: 162 LVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHIT 219
           L      +   V R GGEEFA     ++  EA  +A  +++ ++ + I   +   +  +T
Sbjct: 249 LQRSTRQSEDVVVRYGGEEFAIILFNATLPEAETVAARVKQELKLAAIPHQASAVNAFVT 308

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S GI      +    II  AD ALY AK+SGRNR   
Sbjct: 309 VSQGITCSAPAKTAEQIISDADAALYRAKESGRNRWAL 346


>gi|296102510|ref|YP_003612656.1| diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295056969|gb|ADF61707.1| diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 364

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 67/269 (24%), Positives = 110/269 (40%), Gaps = 20/269 (7%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63
           +     S W     +L    P   ++  S   +++      ++ +   ++ L       +
Sbjct: 97  AFWSMCSYWFITALHLPHVWPLCVILLLSGLTALYFYPEGLLSFVLPLWLTLP---VASW 153

Query: 64  ILVENLSLVIISI-----TISLLLGYISGSILKELFISYN-------RISQLSRIDCLSG 111
           +L + L++  ++I      I L   +I  S   E +           R+  L+  D L+ 
Sbjct: 154 VLNDGLNIRFVTIWSVFTLIMLCGRFILLSWFDEAWRRNQQNQLLISRLDALAHQDPLTK 213

Query: 112 LLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
             N       L      N+  S++  DIDYFK  ND +GH  GD  +  ++  L     T
Sbjct: 214 TANRRMMEVVLENAVEQNKAFSLIMLDIDYFKLYNDTYGHQAGDDCLTRVAQVLKQAVRT 273

Query: 169 PMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAE 226
           P  V  R GGEEF        E  A  +A  ++  +  + I   +   S H+T+S GIA 
Sbjct: 274 PDDVVSRYGGEEFVVILFNCPENVAQQVARRIQDGLRAAAIPHGASKVSEHVTVSMGIAG 333

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRV 255
                    +I RAD ALY AK++GR+R 
Sbjct: 334 IAPGLAGPELIARADAALYRAKEAGRDRW 362


>gi|218438732|ref|YP_002377061.1| diguanylate cyclase with Chase2 sensor [Cyanothece sp. PCC 7424]
 gi|218171460|gb|ACK70193.1| diguanylate cyclase with Chase2 sensor [Cyanothece sp. PCC 7424]
          Length = 583

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 58/256 (22%), Positives = 105/256 (41%), Gaps = 30/256 (11%)

Query: 12  WLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL 71
           WL  ++NL       F +      ++ + ++I  + I    +G++      +  ++   L
Sbjct: 347 WLFFKQNL-------FELKIGFLGNVLVVSIIIPSGIL---VGVS-----YWAFLQGWWL 391

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124
            + +  I+L L  ++    K        + Q++  D L+ + N   F          +  
Sbjct: 392 PVFTPFIALTLSALAIPNYK-----NYELYQIACKDSLTQISNRRYFDQYYPQIWHRIKE 446

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
               LS++  D+D+FK  ND +GH  GD+ +  ++  +     +   V R GGEEF    
Sbjct: 447 TQHPLSVILCDVDFFKLYNDTYGHQAGDRCLQQVAQAITKAVRSTDLVARYGGEEFIIVL 506

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAE--RCHKEPISTIIYRAD 241
             +  + A  +   +   ++N  I       S  +T+S G+A     H      +I  AD
Sbjct: 507 PSTDRETAYQIGQRICFQVQNLNIPHQQSQISSIVTLSCGVATSCPPHYATSGVLIAAAD 566

Query: 242 QALYVAKKSGRNRVVC 257
            ALY AK  GRN  V 
Sbjct: 567 SALYEAKAKGRNCAVV 582


>gi|86740196|ref|YP_480596.1| diguanylate cyclase [Frankia sp. CcI3]
 gi|86567058|gb|ABD10867.1| diguanylate cyclase (GGDEF domain) [Frankia sp. CcI3]
          Length = 562

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 16/205 (7%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +  +L     L++++IT  +LL  +  S+L      +  +   +R D  + L N + +  
Sbjct: 358 VVAVLWAANPLLMLAITPPVLL--LQRSLL------HAELLHAARSDAKTRLANPAYWRQ 409

Query: 121 SLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                          LS++  DID+FK++ND FGH +GD ++  ++D L         VG
Sbjct: 410 VAEREINRACQVGRPLSVLLVDIDHFKRVNDRFGHLIGDVILIAVADALRAATRPRDLVG 469

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEP 232
           R GGEEF         + AA +A  +R+ +  +   +   P + +T+S G+A     +  
Sbjct: 470 RFGGEEFVVLLTEVELENAADVAERIRRQVAGTHCRLEGRPPLSVTVSVGVATHHGPRGD 529

Query: 233 ISTIIYRADQALYVAKKSGRNRVVC 257
           ++ +I RAD ALY AK  GRNRV  
Sbjct: 530 LAGLIARADSALYRAKADGRNRVRL 554


>gi|17980444|gb|AAL50635.1|AF418998_1 bacteriophytochrome [Rhodobacter sphaeroides]
          Length = 1016

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 6/178 (3%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-IVFFDIDYFK 140
           LG    + + +   +   +++L   D L+GL N S     L    +  + ++F D+D FK
Sbjct: 575 LGEAIAAEMAQRTRA--ELARLRHYDPLTGLANRSYLQERLAQDGQSAAALLFIDLDRFK 632

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND+ GH VGD ++  ++  LV        V RLGG+EF              LA  LR
Sbjct: 633 AVNDSMGHGVGDGLLIEVARSLVATVRPHDLVVRLGGDEFVVLCHRLDAAGIVSLAERLR 692

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +++E  Q    +G   HI+ S GIA       +  ++  AD A+Y AKK+G NR   F
Sbjct: 693 QVLE--QPFEVAGRKCHISASIGIAMADSIGDLD-LVRAADIAMYAAKKNGGNRGELF 747


>gi|23499992|ref|NP_699432.1| GAF/GGDEF domain-containing protein [Brucella suis 1330]
 gi|148558168|ref|YP_001257280.1| GAF/GGDEF domain-containing protein [Brucella ovis ATCC 25840]
 gi|261323500|ref|ZP_05962697.1| predicted protein [Brucella neotomae 5K33]
 gi|261753233|ref|ZP_05996942.1| predicted protein [Brucella suis bv. 3 str. 686]
 gi|23463575|gb|AAN33437.1| GAF/GGDEF domain protein [Brucella suis 1330]
 gi|148369453|gb|ABQ62325.1| GAF/GGDEF domain protein [Brucella ovis ATCC 25840]
 gi|261299480|gb|EEY02977.1| predicted protein [Brucella neotomae 5K33]
 gi|261742986|gb|EEY30912.1| predicted protein [Brucella suis bv. 3 str. 686]
          Length = 391

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS--- 130
           L++G I+     I  +   +  R++  +  D L+ L N       ++   S  + LS   
Sbjct: 197 LMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGKLLTQKKSARDGLSRDG 256

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSS 188
            ++  D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF      G+S
Sbjct: 257 FLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTS 316

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++  I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK
Sbjct: 317 KEQTDIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAK 375

Query: 249 KSGRNRVVCFSD 260
             G+NR   F +
Sbjct: 376 SKGKNRFEYFEE 387


>gi|117924699|ref|YP_865316.1| response regulator receiver modulated diguanylate cyclase
           [Magnetococcus sp. MC-1]
 gi|117608455|gb|ABK43910.1| response regulator receiver modulated diguanylate cyclase
           [Magnetococcus sp. MC-1]
          Length = 476

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 59/202 (29%), Positives = 99/202 (49%), Gaps = 15/202 (7%)

Query: 65  LVENLSLVIISITISLLLGY----ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-- 118
           L  ++ L   + +++LL G+     + + +  +     ++ +++  D L+G+ N ++   
Sbjct: 245 LQRSVELRPFAASVNLLEGHNKLVFTFADIASIESHMRKLEEIAFTDGLTGVANRASLQQ 304

Query: 119 -----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                +     +    SI+ FDID+FKQ+NDNFGH VGD V+  L+  +         + 
Sbjct: 305 ILNAEMQRSRRHGGTFSIILFDIDHFKQVNDNFGHQVGDDVLRLLASTIADNLRATDTIA 364

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEF       + + A  LA  LR++IE+            IT S G+ +    +  
Sbjct: 365 RWGGEEFMVVCPEINIEAAHRLAEKLRQLIEHITFPEVK----QITSSFGVTQFQKNDQS 420

Query: 234 STIIYRADQALYVAKKSGRNRV 255
            ++  RAD ALY AK+ GRNRV
Sbjct: 421 RSLTQRADCALYRAKEGGRNRV 442


>gi|330968339|gb|EGH68599.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 702

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 11/194 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------ 130
           T ++LL        +EL  +  R+   +  D L+GL N S     L    +         
Sbjct: 249 TANVLLEARVRDRTRELDQANARLQHENSHDSLTGLPNRSQLQHRLRQAWQDFCRNGRQL 308

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            ++F D+D FK IND+ GH  GD ++   +++L         + RLGG+EFA  ++ +  
Sbjct: 309 VVMFIDLDRFKMINDSLGHHCGDILLIQAAERLRSCMREEDLLARLGGDEFAVLSIDTPL 368

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
           Q    +A  +    E  Q  +    ++  + S G+  A+    +  + ++  AD A+Y  
Sbjct: 369 QTGTGIAQRILTAFE--QPFVIDDHTVFSSCSIGVVGADSQFHQEPADLLRDADTAMYRV 426

Query: 248 KKSGRNRVVCFSDI 261
           K  GR+    F+  
Sbjct: 427 KNGGRDSFAVFNQA 440


>gi|330895802|gb|EGH28091.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 748

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
            S L+E       ++ ++  D L+ L N +  ++ L +         E+ +++F D+D F
Sbjct: 300 QSRLEERERISEELTYIAFHDELTSLFNRAYLMNELTTAFEIRDPRYERATVLFLDLDGF 359

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
           K +ND+ GH  GDK++  ++++L     +   + R+GG+EFA   +G  + + A  +A  
Sbjct: 360 KVVNDSMGHLAGDKLLKAVANRLQTCVRSNDVLARIGGDEFAILLMGKDQPETAVKMAER 419

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           +   +  + I I +   I I+ S GI            ++  AD A+Y AKK GR R   
Sbjct: 420 IVSQLHTA-IQIEN-QDIFISCSIGIVTAGDSHTKPEELLRDADVAMYSAKKQGRGRWSI 477

Query: 258 FSDIENNTC 266
           F+       
Sbjct: 478 FNTSMREAA 486


>gi|329897316|ref|ZP_08272034.1| GGDEF domain protein [gamma proteobacterium IMCC3088]
 gi|328921247|gb|EGG28646.1| GGDEF domain protein [gamma proteobacterium IMCC3088]
          Length = 488

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 69/261 (26%), Positives = 120/261 (45%), Gaps = 12/261 (4%)

Query: 3   RSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLE 62
           + L+     W   +     F   + +   +    +F+  +  +A   +  + +  F+ L 
Sbjct: 221 QYLQTIYGAWRAGDDKAFIFIVGSLVFITTSVHDLFVTLLFDVAPGKM--LSMYGFFSLV 278

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
             +   LS    ++  +L  G +     ++L  + +R+++ +R D L+ LLN   F  S 
Sbjct: 279 VCMAVLLSRQYAAVLDNL--GELVNERTQQLRDANSRLARHAREDALTQLLNRRGFQESA 336

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                        LS++  D+D+FK+IND +GH VGD+V+  L+  L +       +GR 
Sbjct: 337 EQIIANVQAQGSTLSLILCDVDHFKRINDRYGHAVGDRVLQHLARHLGLNIRDVDILGRW 396

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           GGEEF       S   A  LA  L   +  SQI    G  + +T++ G+A+    + + +
Sbjct: 397 GGEEFILVLPDLSLSGAQTLAQRLCDSL-PSQIFRIDGIRLGLTMTFGVAQWRQGDTLES 455

Query: 236 IIYRADQALYVAKKSGRNRVV 256
           +I RAD ALY  K  GR +VV
Sbjct: 456 LIARADVALYEGKTRGRCQVV 476


>gi|330828259|ref|YP_004391211.1| GGDEF domain-containing protein [Aeromonas veronii B565]
 gi|328803395|gb|AEB48594.1| GGDEF domain protein [Aeromonas veronii B565]
          Length = 340

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 63/172 (36%), Positives = 90/172 (52%), Gaps = 5/172 (2%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNF 146
           +KEL  + N   +L+  D L+ LLN  AF   L       +  S++  DID FK  ND +
Sbjct: 165 IKELRAALNETRKLANEDALTSLLNRRAFDLELEGLIRSQQSFSLILTDIDRFKSFNDEY 224

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH +GD+V+   S +L       +   R+GGEEFA      S   A  +A  +R+ IE  
Sbjct: 225 GHLLGDQVLRAFSKRLRDASKEGVTAYRIGGEEFALLLPHRSLALARQMAESMRRAIERM 284

Query: 207 QI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            I +  SG  I HIT S G+ E   +E   +++ R D+ LY AK+ GRNRV+
Sbjct: 285 SILDRKSGRRIDHITASFGVGEFNGQESADSLVERTDKLLYKAKELGRNRVM 336


>gi|325928728|ref|ZP_08189898.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
 gi|325540896|gb|EGD12468.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
          Length = 553

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 57/192 (29%), Positives = 86/192 (44%), Gaps = 9/192 (4%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SY 125
           + S+T++          L  L +    + Q S  D L+GL N      +L          
Sbjct: 354 LASLTVAEAAAEQLSLALHNLRL-RETLRQQSIRDPLTGLYNRRYLEETLSHELARCTRR 412

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              LS++  D+D+FK+ ND  GH  GD+V+A + + L+          R GGEE      
Sbjct: 413 ELPLSVLMLDVDHFKRFNDLHGHSGGDRVLAAIGELLLAQTRGEDICCRYGGEELTIILP 472

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
                 A ++A  LR  IE  Q+         +T S G A    H   +++++ RAD AL
Sbjct: 473 EVDLPTACMMAEKLRAGIEALQVMGDGVCLPKVTASFGAASFPAHASTVASLLQRADAAL 532

Query: 245 YVAKKSGRNRVV 256
           Y AK+ GRN+VV
Sbjct: 533 YRAKQGGRNQVV 544


>gi|172062494|ref|YP_001810145.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria MC40-6]
 gi|171995011|gb|ACB65929.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria MC40-6]
          Length = 667

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 19/192 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDID 137
           SG  + E   +  R+++L+  D L+GL N  A    +G+           ++ I+F D+D
Sbjct: 218 SGIDVTEERNAQQRLTELANTDMLTGLPNRHAISERIGAALAADRADMRGQVGILFLDLD 277

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAA 193
            FK++ND++GH  GD+++  +S  +     +   + RLGG+EF       +    E  A 
Sbjct: 278 NFKRVNDHYGHITGDRLLQDVSKIISGCLPSGATLARLGGDEFLVLFEHGTRPLLEATAQ 337

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
           I+   LR  I    +       I+ + S GIA    H + + T+I  AD A+YVAK+ G+
Sbjct: 338 IILERLRTPIHLGLM------EIYTSCSIGIAMYPQHGDSLETLIRSADTAMYVAKEEGK 391

Query: 253 NRVVCFSDIENN 264
           +    FS   N 
Sbjct: 392 HTYRVFSLEMNQ 403


>gi|303241729|ref|ZP_07328226.1| diguanylate cyclase with GAF sensor [Acetivibrio cellulolyticus
           CD2]
 gi|302590730|gb|EFL60481.1| diguanylate cyclase with GAF sensor [Acetivibrio cellulolyticus
           CD2]
          Length = 565

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 61/180 (33%), Positives = 86/180 (47%), Gaps = 9/180 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           SI  E    Y R+ +L+ +D L+G+ N   F   L    E        LS+  FDID+FK
Sbjct: 381 SIALENAELYERMHELATVDSLTGVYNRLYFQERLQQEFENAQKNKYDLSLAIFDIDHFK 440

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           + ND FGH  GDKV+  +SD L     +   + R GGEEF      +  +EA      LR
Sbjct: 441 RFNDTFGHLFGDKVLRHISDLLKNSLRSGDIIARYGGEEFVLLFPRTGLKEAYDKVEILR 500

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFS 259
           + I  + I      +  +T+S G++           ++  AD ALY AK+SGRN V   S
Sbjct: 501 EKIAKTTIR-DELVTASVTVSFGLSTYPEVSTTESDLLKMADNALYDAKESGRNCVKVAS 559


>gi|253995504|ref|YP_003047568.1| diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
 gi|253982183|gb|ACT47041.1| diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
          Length = 715

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 93/198 (46%), Gaps = 10/198 (5%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SY 125
           ++   +S+++  +  S L  L  + + +   +  D L+G+ N   F + L         +
Sbjct: 263 VVRSILSVMVMVVGSSKL--LSRTLSELEYYAMHDPLTGIYNRRQFNNMLEYEIGRSERH 320

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           + + S++  D+D FK IND++GH  GD+ +  +++ L           R+GG+EFA   +
Sbjct: 321 HHEFSLLQLDLDDFKDINDSYGHQTGDEALCGVAEVLREHIRKGDLAARIGGDEFAVILM 380

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
            +  + A  +AN L K +         G   H+T+S GIA      +  + +   AD A+
Sbjct: 381 ETGREGATTVANMLGKSLRERTFTAPDGKHFHLTVSIGIATYPIDAQNEADLQVGADAAM 440

Query: 245 YVAKKSGRNRVVCFSDIE 262
           Y AK  G++      +++
Sbjct: 441 YRAKDIGKDSACTLDELD 458


>gi|254520084|ref|ZP_05132140.1| GGDEF/HD domain-containing protein [Clostridium sp. 7_2_43FAA]
 gi|226913833|gb|EEH99034.1| GGDEF/HD domain-containing protein [Clostridium sp. 7_2_43FAA]
          Length = 566

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 108/233 (46%), Gaps = 10/233 (4%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI 100
           TV FI+++ +  I +  F     +     + +I+S  I LL  +  G  +K      N++
Sbjct: 133 TVAFISSVLILGIDIFCFPNAGAVNKYFQNDLILS-GIFLLTAWPLGFYVKIEDEHINKL 191

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +L   D L+G+ NH  F  +L           E  S++F DIDYFK  ND +GH  GD+
Sbjct: 192 EELVNKDGLTGVYNHRYFHDALKEKIILSEKDKEHTSMIFVDIDYFKHYNDLYGHQKGDE 251

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  + D L           R GGEEFA     + E+EA  LA+ LR  IE ++      
Sbjct: 252 VLRSIGDILKNNIREGDIAARYGGEEFAVILPNTKEEEALSLADKLRSTIEKTKFYGEEN 311

Query: 214 PSIHI-TISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDIENN 264
               + T S G++    K      +I  AD ALY AK   +NRV  ++ I + 
Sbjct: 312 QPRGVLTASMGVSVYPDKAKSDVELIKSADDALYRAKFFNKNRVETYTSILDE 364


>gi|149378217|ref|ZP_01895932.1| diguanylate cyclase [Marinobacter algicola DG893]
 gi|149357507|gb|EDM46014.1| diguanylate cyclase [Marinobacter algicola DG893]
          Length = 573

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 12/187 (6%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------- 128
           T++  L + +  + +++    + +++L+RID L+GL N      +L    ++        
Sbjct: 378 TMTDTLAHSTRELERKVAQRTDELNRLARIDALTGLKNRRGLDEALDEEIQRAKRQNNTG 437

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
             +++ DID+FK IND  GH  GD ++  ++  L          GR GG+EF        
Sbjct: 438 FGLIWLDIDHFKAINDELGHQAGDDILCRVALWLKAGVRPYDHPGRWGGDEFVVVLSPCD 497

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           E     +A  +R+ IE   I   +     +T+S G       + + TI+ +ADQALY  K
Sbjct: 498 EDTLCQIAARIRETIERDSIRTGT----PVTVSVGGYLCQPGDDVDTILRQADQALYRVK 553

Query: 249 KSGRNRV 255
           + GRN+V
Sbjct: 554 QQGRNKV 560


>gi|89054522|ref|YP_509973.1| diguanylate cyclase/phosphodiesterase [Jannaschia sp. CCS1]
 gi|88864071|gb|ABD54948.1| diguanylate cyclase/phosphodiesterase [Jannaschia sp. CCS1]
          Length = 569

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 6/160 (3%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL N         ++   +     +F D+D+FKQ+ND  GH +GDK++  ++D+L 
Sbjct: 138 DELTGLGNRKYLKACFEAIAQEDSGAIALFLDLDHFKQVNDTLGHAIGDKLLCKVADRLR 197

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   V R+GG+EFA   +   +  A  +A  + K+I   +  +  G  + I +S G
Sbjct: 198 KSVREGDIVVRIGGDEFAILLINWDQSAAEDVAARIIKVI--GRPFLIEGHQVTIGVSIG 255

Query: 224 IAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +A R   E     ++ RAD ALY +K+ GRNR   F D  
Sbjct: 256 MAVRLPNERESEKLLQRADVALYESKRLGRNRFHWFKDAM 295


>gi|89900840|ref|YP_523311.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Rhodoferax ferrireducens T118]
 gi|89345577|gb|ABD69780.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 1034

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 12/187 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + +   +   I  L+  D L+GL N       L              +++F D+D FK 
Sbjct: 589 DITKRKAAEAEIEHLAFYDLLTGLPNRRLLNDRLQQVLAVGTRSRRHGALLFIDLDNFKN 648

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ--EAAILANDL 199
           +ND  GH  GD ++  ++ +L         V RLGG++F       SEQ  EAA  A  +
Sbjct: 649 LNDTQGHEQGDVLLQQVAQRLNFCVRECDTVARLGGDDFVVMLQDLSEQQTEAATQAEGV 708

Query: 200 -RKIIENSQINISSGP-SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +KI++        G  + H + S G+A     ++ +  ++ RAD ALY AK +GRN + 
Sbjct: 709 GQKILDALHQPYPFGHFTHHGSASVGVALFNASQDTVEELLKRADLALYQAKDAGRNTLR 768

Query: 257 CFSDIEN 263
            F     
Sbjct: 769 FFDPDMQ 775


>gi|241767182|ref|ZP_04764937.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
 gi|241362200|gb|EER58262.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
          Length = 273

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 93/205 (45%), Gaps = 17/205 (8%)

Query: 66  VENLSLVIISITISLLLG-----YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           V  LS+V+  +T  LL              +EL  +   +   +R D L+GLLN   F +
Sbjct: 71  VHRLSVVLNGMTRRLLAANEAMEEKVRQRTQELEAANRELDTQARSDPLTGLLNRRGFGA 130

Query: 121 SL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L             L++V  D+D+FK IND  GH VGD+V+  L+  L         V 
Sbjct: 131 QLDFALALARRGRRPLAMVALDVDHFKHINDTHGHDVGDQVLQRLASTLRERLRDSDVVA 190

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEP 232
           RLGGEEF A    +    A   A  L + I   +  +        T+SAG+ A R   + 
Sbjct: 191 RLGGEEFVALLPDTDLAGAEATARTLVQTIAAQEDPVVG----RFTVSAGVSALRNPLDN 246

Query: 233 ISTIIYRADQALYVAKKSGRNRVVC 257
              ++ R+DQALY AK  GRNRV  
Sbjct: 247 GPALLRRSDQALYEAKGQGRNRVCV 271


>gi|207722444|ref|YP_002252880.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           MolK2]
 gi|206587623|emb|CAQ18205.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           MolK2]
          Length = 505

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 100/230 (43%), Gaps = 14/230 (6%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
           I     I ++ L    +   +      +  + L++ ++ I + + +     L+    +  
Sbjct: 267 IGDYPLIVSVGLATEDIYAEWRARARWIGGIVLLLDAVLIGMSIQF--AKQLRRRMEAEQ 324

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++ L+  D L+GL    A  S+L          ++ L+++  D+D FK  ND +GH  G
Sbjct: 325 KLAWLANTDGLTGLGTRRALDSALEAEWQRANRQHQPLAVLMIDVDEFKHYNDRYGHAAG 384

Query: 152 DKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D V+  ++  +   +     F GR GGEEF      +    A  +A  +R  +  +    
Sbjct: 385 DTVLRTVARCVNDSIRRPGDFAGRYGGEEFCVLLPNTDLPGAQRVAEAIRGTVLAAGEPN 444

Query: 211 SSGPSIHITISAGIAERCH----KEPISTIIYRADQALYVAKKSGRNRVV 256
           +      +T+S G+A         +  + +++RAD  LY AK  GRN V+
Sbjct: 445 AGSKHGRLTVSIGVAVHGGRSEAGDTPARLLHRADLQLYEAKSGGRNIVM 494


>gi|119898981|ref|YP_934194.1| GGDEF family protein [Azoarcus sp. BH72]
 gi|119671394|emb|CAL95307.1| GGDEF family protein [Azoarcus sp. BH72]
          Length = 610

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 8/177 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           +   +  L    +  S+L R D L+G LN      +L         +   L +   D+D 
Sbjct: 431 ANQHILRLQRELDETSELVRHDPLTGALNRKGLDEALAREIARARRHGSPLCLALLDVDN 490

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND +GH  GD  +  L   +         VGR GGEEF      +  ++AA +   
Sbjct: 491 FKQLNDTYGHRAGDDALRHLFSVIREAVRPQDAVGRYGGEEFLIVLPDTDTEQAAAVVVR 550

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           L++ +   +  +++   + IT SAGIA     E     I RAD+A+Y AK++G+NRV
Sbjct: 551 LQREL-TRRFFLANSQKLLITFSAGIARLHADEDPQLAIDRADKAMYAAKRAGKNRV 606


>gi|82701771|ref|YP_411337.1| diguanylate cyclase [Nitrosospira multiformis ATCC 25196]
 gi|82409836|gb|ABB73945.1| diguanylate cyclase (GGDEF domain) [Nitrosospira multiformis ATCC
           25196]
          Length = 569

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 10/175 (5%)

Query: 92  ELFISYNR-ISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           E     NR + +LS  D L+GL N +   +                +++  DID+FK +N
Sbjct: 394 EAMQQQNRMLEKLSITDSLTGLYNRNKLDAILADQLARFRRTQRPFALLMLDIDHFKTLN 453

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GDK++A ++  L+    +  +  R GG+EF    + +   +A   A  +R  +
Sbjct: 454 DTYGHITGDKILAKVAQILLQSIRSIDYAARYGGDEFIIILVETYIDQAVKTAERIRTHV 513

Query: 204 ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           E          +I IT+S G  E R      + +  RAD ALY AK++GRN+   
Sbjct: 514 EKLTYPAGKS-TISITVSIGAVECRSDDSTTTAVFSRADNALYEAKRAGRNQAYF 567


>gi|50121361|ref|YP_050528.1| putative signaling protein [Pectobacterium atrosepticum SCRI1043]
 gi|49611887|emb|CAG75336.1| putative signaling protein [Pectobacterium atrosepticum SCRI1043]
          Length = 722

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 101/207 (48%), Gaps = 13/207 (6%)

Query: 64  ILVENLSLVIISITISLL-----LGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           +  ++ SLV + +++S+      + Y      + E   +  R+  L+ +D L+GL N + 
Sbjct: 250 VQAKSGSLVPVELSVSMWEDNDNVSYGAILRDITERRRNEERLFLLAHMDPLTGLANRTL 309

Query: 118 FISSLGSY--NEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
             S+L +   NE  + I+  D+D FK +ND+ GH  GD ++  ++ ++     +   V R
Sbjct: 310 LTSNLETALKNEPAVCIMMVDLDGFKDVNDSLGHSSGDDILVHVAKKIKAAVRSGDVVAR 369

Query: 175 LGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEP 232
           +GG+EFA    G S ++ A  +A  +  I E SQ  I     I+I+ S G          
Sbjct: 370 MGGDEFALLFPGLSDKKVAGKIAEQI--IHEISQAMIIDDHQINISASIGAVLYPDYGLT 427

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  ++  AD ALY AK  GRN    F+
Sbjct: 428 VQDLLTSADLALYQAKSEGRNCYRFFT 454


>gi|107104028|ref|ZP_01367946.1| hypothetical protein PaerPA_01005101 [Pseudomonas aeruginosa PACS2]
          Length = 633

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 11/185 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   ++   +  D L+GL N    +            +   ++++  D+D+FK IN
Sbjct: 436 RQLQMREAQLQYAAHHDPLTGLGNRRHLMEFAESALDDARRHGNSMALLLIDLDHFKPIN 495

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKI 202
           D  GH  GD V+  ++ +L     T   V RLGG+EFA    GS+ EQ A  +A  L + 
Sbjct: 496 DTHGHDAGDFVLQNVAQRLRHCVRTEDCVARLGGDEFAVLVGGSNAEQHARDIAERLLR- 554

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            E ++    +   + IT S G+A           +   ADQALY  K +GR      +D 
Sbjct: 555 -ELAKPVEFAKQWLVITPSIGVALFPGDALQFGKLYKAADQALYRVKGAGRAGYAMAADD 613

Query: 262 ENNTC 266
           E  T 
Sbjct: 614 ERETA 618


>gi|330859065|emb|CBX69423.1| hypothetical protein YEW_KB43890 [Yersinia enterocolitica W22703]
          Length = 567

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 59/188 (31%), Positives = 86/188 (45%), Gaps = 11/188 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNH---SAFISS----LGSYNEKLSIVFFDIDY 138
           + S +     +  RI  LS  D L+GL N      F+ +    L +    L I+  D+D 
Sbjct: 124 TASDITREIEAQERIQHLSLHDALTGLPNRLRMKEFLENKLHNLAAAPHPLVILNVDLDK 183

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK +ND FGH  GD+V+  +S++L         V R GG+EF     G SS +E   L  
Sbjct: 184 FKPVNDTFGHVAGDQVLHQVSERLRSCLRDQDLVARQGGDEFILIISGLSSTKEIEQLCA 243

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            +   IE+    + +   I I+ S GIA           ++  AD A+Y AK SG NR  
Sbjct: 244 RVIARIES--PYLINEKDIFISASIGIALAPQDSMQAEELLRFADIAMYEAKNSGSNRWS 301

Query: 257 CFSDIENN 264
            +S   N+
Sbjct: 302 FYSSEMND 309


>gi|170761628|ref|YP_001785670.1| GGDEF/HD domain-containing protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408617|gb|ACA57028.1| GGDEF/HD domain protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 567

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 76/251 (30%), Positives = 116/251 (46%), Gaps = 17/251 (6%)

Query: 31  FSIFFSIFIATV-------IFIANIFLFYIGLTPFYGLEYILV-ENLSLVIISITISLLL 82
           F   F I I T+       I IA +  F I +        ++V E     +I   + +L 
Sbjct: 113 FLFLFMIIITTIQLGMKQGIIIACLASFIILIMDIVCAPNLVVNEYFEQDLILAGVFILT 172

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFD 135
            +  G  +K       ++  L   D L+ + NH  F  +L          NE LS++F D
Sbjct: 173 AWPLGFYVKVENEHIEKLESLVNKDGLTDVYNHRFFHDALSKEVIECEEKNEALSMIFID 232

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           IDYFK  ND +GH  GD+V+  + + L         V R GGEEFA     +SEQ+A  +
Sbjct: 233 IDYFKHYNDLYGHQKGDQVLKTMGEILKNNTRKEDIVARYGGEEFAVLLPNTSEQDAINI 292

Query: 196 ANDLRKIIENSQIN-ISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRN 253
           A  +R+ IE +      + P+ ++T+S GI+   +K      +I  AD ALY AK   +N
Sbjct: 293 AEKIRRKIEYTYFEGEENQPNGNLTVSMGISVYPYKAKSDMELIKSADDALYRAKFFNKN 352

Query: 254 RVVCFSDIENN 264
           RV  ++ I + 
Sbjct: 353 RVEAYTSILDE 363


>gi|16125110|ref|NP_419674.1| GGDEF family protein [Caulobacter crescentus CB15]
 gi|221233837|ref|YP_002516273.1| CHASE4-family GGDEF/EAL protein [Caulobacter crescentus NA1000]
 gi|13422114|gb|AAK22842.1| GGDEF family protein [Caulobacter crescentus CB15]
 gi|220963009|gb|ACL94365.1| CHASE4-family GGDEF/EAL protein [Caulobacter crescentus NA1000]
          Length = 735

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 104/235 (44%), Gaps = 17/235 (7%)

Query: 46  ANIFLFYIGLTPFYGLEYILVENLSLVIISI----TISLLLGYISGSILKELFISYNRIS 101
           A   +  +  TP +  + +L + +  +++ +     ++LL    S  I + L  S  R  
Sbjct: 244 AGQVVATLDWTPPHPGQRLLRKAVVPILLVVGGLAVVALLFARRSRRIAEGLVASEARAK 303

Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            ++  D L+GL N   F   L             ++++  D+D FK +ND  GH  GD++
Sbjct: 304 HMAMHDALTGLPNRVLFEERLRQGVDGLSRRRGAMAVLAIDLDRFKAVNDTHGHAAGDEL 363

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           I  +  +L  +      + RLGG+EF   A     Q AA LA  L   +  + +++S G 
Sbjct: 364 IQVIGARLAGLCRASETLARLGGDEFGVVAAEIDPQGAAALAERLVAALA-APVDLSCG- 421

Query: 215 SIHITISAGIAERCHKEPISTII---YRADQALYVAKKSGRNRVVCFSDIENNTC 266
           ++ +  S G+A     E     +    RAD A+Y AK  GR R   F + E +  
Sbjct: 422 TVFVGGSVGVAVITPDEAFVGAVEAARRADVAMYRAKDEGRGRYCFF-EAEMDAA 475


>gi|119776397|ref|YP_929137.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B]
 gi|119768897|gb|ABM01468.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           amazonensis SB2B]
          Length = 862

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 13/181 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQ 141
           ++       ++   ++ D L+GL N S F   LG           ++ +++F D+D FKQ
Sbjct: 434 IQRRREVEQKLIHDAKHDALTGLPNRSMFTERLGQAVRHVRRHGRDQFALLFIDLDRFKQ 493

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           IND  GH  GD+ +   + +L         +GRLGG+EF        + ++A  +A  + 
Sbjct: 494 INDTLGHLEGDRFLIETARRLSHCIRENDTLGRLGGDEFVVLLDQINTPKDAEEVAERIL 553

Query: 201 KIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +  S+             S GIA   R  ++   +++  AD A+Y AK  G+   V +
Sbjct: 554 SQL--SEPFQLGDALFQSGASIGIAISGRSQQDTPESMLRDADAAMYQAKSRGKGCYVVY 611

Query: 259 S 259
            
Sbjct: 612 D 612


>gi|330953340|gb|EGH53600.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 939

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 11/194 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------ 130
           T ++LL        +EL  +  R+   +  D L+GL N S     L    ++        
Sbjct: 486 TANVLLEARVRDRTRELDRANARLQHENSHDSLTGLPNRSHLQYRLRHAWQEFCCDGQQL 545

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            ++F D+D FK IND+ GH  GD ++   +++L         + RLGG+EFA  ++ +  
Sbjct: 546 IVMFIDLDRFKMINDSLGHHCGDILLVQAAERLRSCMREKDLLARLGGDEFAVLSIDTPL 605

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247
           Q    +A  +    E  Q  +    ++  + S G+  A+    +  + ++  AD A+Y  
Sbjct: 606 QTGTEIAQRILTAFE--QPFVIDDHTVFSSCSIGVVGADSRFHQEPADLLRDADTAMYRV 663

Query: 248 KKSGRNRVVCFSDI 261
           K  GR+    F+  
Sbjct: 664 KNGGRDSFAVFNQA 677


>gi|307727776|ref|YP_003910989.1| diguanylate cyclase [Burkholderia sp. CCGE1003]
 gi|307588301|gb|ADN61698.1| diguanylate cyclase [Burkholderia sp. CCGE1003]
          Length = 502

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 60/215 (27%), Positives = 104/215 (48%), Gaps = 16/215 (7%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L  +  L +I+  + S  +IS     ++  ++ + L++  ++ +R+++L++ D L+GL N
Sbjct: 286 LASWKTLSWIVGTSAS--VISAGFCAVVWLLAFA-LRDRALAEDRLTELTQTDSLTGLKN 342

Query: 115 HSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVF 166
             A    L +  E+L       S++F D D+FKQ ND  GH  GDK +  L+  +     
Sbjct: 343 RRALDEVLRNEWERLERNESCLSVLFLDADHFKQYNDKHGHAEGDKALRHLAKCITQRAR 402

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI---TISAG 223
                  R GGEEF      +S  +A ++A  +R+ +E S      G    +   T+S G
Sbjct: 403 RRGDCAARYGGEEFVVVLPDTSSADALLIAEGIRETLEKSWQVQHGGEKAGLHAFTVSIG 462

Query: 224 IAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            A     H   +  +   AD A+Y AK++GR+ V 
Sbjct: 463 CATGRPGHGATLEQLTKLADLAIYEAKRAGRDCVR 497


>gi|317153199|ref|YP_004121247.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
 gi|316943450|gb|ADU62501.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
          Length = 277

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 80/178 (44%), Gaps = 10/178 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           L++   +  R++  +  D L+GL N  AF  +L             LS+  FD+D FK+I
Sbjct: 73  LRQFQATLERLAYQTDHDPLTGLANRRAFDRTLEIEVERSRRAKTPLSLALFDLDDFKRI 132

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GHP GD+V+   + ++           R GGEEFA    GS   +A  L   L   
Sbjct: 133 NDTYGHPKGDEVLIAFARRVSETTRRYDLAARFGGEEFALVMAGSGVVKAQRLLERLLSE 192

Query: 203 IENSQINISSG-PSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVC 257
               +     G  +  +T S G+        +    ++  AD ALY AK +G++++  
Sbjct: 193 FRQMEFTAPDGSHTFSVTCSVGLTCFKGTVDLEPVELVQMADDALYEAKNAGKDQIRV 250


>gi|255025094|ref|ZP_05297080.1| ggdef domain protein [Listeria monocytogenes FSL J2-003]
          Length = 357

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 109/233 (46%), Gaps = 11/233 (4%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           F I+   ++ I       I L      E +   N+++ ++   I+L++G +S  ++  + 
Sbjct: 126 FKIWGVFILNIIACSFVVINLHLILARESLFWINMTIFVL---IALVIGAVSAGLMSNMI 182

Query: 95  IS---YNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFG 147
            S   + +  Q S +D L+ L N   F       + S + +++++  DIDYFK IND +G
Sbjct: 183 KSKQLFQKYEQDSTLDYLTKLSNVRQFDEKINHVMDSGSRQVTLMLIDIDYFKNINDTYG 242

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD ++  L+  L           R GGEEF+   L  S +E   +A  +RK  E   
Sbjct: 243 HDAGDAILKQLAVILKESTTDGSEAFRNGGEEFSIVLLDCSIEEGNKVAEQVRKETEEHD 302

Query: 208 INISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFS 259
             I  G  + ITIS G++        S  +   AD+ALY AK +GRNRV    
Sbjct: 303 FVIPGGQIVKITISVGVSSSKDGANTSEGLFKSADEALYKAKLTGRNRVCIAD 355


>gi|254000362|ref|YP_003052425.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase [Methylovorus sp. SIP3-4]
 gi|253987041|gb|ACT51898.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Methylovorus sp. SIP3-4]
          Length = 435

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 11/169 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++ L++ D L+ L N       L            +L+++F D+D FKQIND  GH VG
Sbjct: 266 KMAHLAQHDYLTNLPNRMLLNDRLSQAITLAERGTSQLAVLFMDLDNFKQINDTLGHVVG 325

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINI 210
           D ++  ++ +L+ +      V R GG+EF      S   ++AA++A+ + + +E  + + 
Sbjct: 326 DAILQSVAKRLIELVRKSDTVSRQGGDEFLMLVDESKHGEDAALIASKILRALE--KPHA 383

Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             G  +H+T S GI+   H      T+I  AD A+Y AKK GRN    F
Sbjct: 384 IGGKELHLTASIGISLYPHDGRDAQTLINHADSAMYEAKKQGRNNFKFF 432


>gi|157364814|ref|YP_001471581.1| diguanylate cyclase with PAS/PAC sensor [Thermotoga lettingae TMO]
 gi|157315418|gb|ABV34517.1| diguanylate cyclase with PAS/PAC sensor [Thermotoga lettingae TMO]
          Length = 466

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 10/168 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           + K++      +  LS  D L+GL N                   + +S+++ D+  FK+
Sbjct: 290 LEKKIKDQNKTMRFLSYHDPLTGLPNRRMLEEEAERILSSSNRSGKTVSVIYIDLMGFKK 349

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH  GDKV++ ++ +L        FV RLGG+EF     G+  + A  L   + +
Sbjct: 350 INDQYGHSTGDKVLSVVAKRLKKCMRKSDFVARLGGDEFVFLLPGTPARLAVKLIERVIE 409

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAK 248
            IE   I    G  + I+ +AGIAE          I+  AD+A+Y AK
Sbjct: 410 QIETPIIQ--EGKKLKISANAGIAEYPKDGGYFEKILRNADRAMYHAK 455


>gi|27375993|ref|NP_767522.1| hypothetical protein bll0882 [Bradyrhizobium japonicum USDA 110]
 gi|27349132|dbj|BAC46147.1| bll0882 [Bradyrhizobium japonicum USDA 110]
          Length = 1043

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 13/223 (5%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           +I  TP  G  YI    + +   S     ++  +    + E   ++ +I+ ++  D L+ 
Sbjct: 564 HIWSTPTIGRRYITSTRIGIRDKSGEPRYIINVV--EDVTERRRAHEKIAHMAHYDALTD 621

Query: 112 LLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           L N + F   +           + ++++ D+D FK IND+ GH VGD+++  ++ +L   
Sbjct: 622 LPNRTLFREQIERELAKVADGGQFALLYIDVDEFKGINDSLGHHVGDELLKAIATRLRGC 681

Query: 166 FGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                 + RLGG+EFA    G  S  +       + + I   Q     G  +    S GI
Sbjct: 682 LKKSDLIARLGGDEFAVIQTGIQSRADVLSFVTRIYEAIR--QPYHCLGHQLSTDASIGI 739

Query: 225 AERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           A        +  +I  AD A+Y AK  GR R   F + E + C
Sbjct: 740 ALAPQDGNDLDQLIKNADLAMYGAKAEGR-RTHRFFEPEMDAC 781


>gi|114048814|ref|YP_739364.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113890256|gb|ABI44307.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 482

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 95/222 (42%), Gaps = 21/222 (9%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK----------ELFISYNRISQ 102
           I  T +  +  ++   L +V + +T + ++   +  +            +L  S   +  
Sbjct: 260 IDETNYLLIYQVIAATLLVVCLLVTRTYMISRYNRRLTDKNQQLEELRLQLEQSNAELEF 319

Query: 103 LSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+ L N   F            S    + +V  DID+FK+IND  GH VGD ++
Sbjct: 320 LSTHDPLTKLYNRHYFNRQFVHDHRAATSTQGAICLVMLDIDFFKEINDTLGHAVGDTIL 379

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             LS  L         V R GGEEF      +S +    L   +   I+++         
Sbjct: 380 MELSSVLQHCVRESDVVARWGGEEFVILCHNTSLEAVKSLCQRIATAIKDNHF----SGD 435

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +T S GIA+    EP+ +   RAD+ALY AK  GR+++  
Sbjct: 436 VRLTCSFGIAKLAANEPMQSCFERADKALYQAKAQGRDQICV 477


>gi|134291268|ref|YP_001115037.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia vietnamiensis
           G4]
 gi|134134457|gb|ABO58782.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia vietnamiensis
           G4]
          Length = 432

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 5/175 (2%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQIND 144
             ++E       + + +  D L+GL N   F++ +      ++ LS+   DIDYFK+IND
Sbjct: 257 RDIRERAELIALLKKQAVTDALTGLANRREFLNFVEKVLGTDDLLSVFILDIDYFKKIND 316

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH +GD+V+  L+   + +        R GGEEF AA  G+   +   +A  LR+  E
Sbjct: 317 GYGHDIGDEVLRVLAKVGMSIPHESGLFARWGGEEFVAALPGADAADVRRIAETLRRRFE 376

Query: 205 NSQINIS-SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
                 +     I  T+S G+  R   E  +  ++ RAD+ALY AK+SGRNR+  
Sbjct: 377 EQDFEHAWRVKPIQFTVSIGVVTREAGERDVDALMRRADRALYAAKESGRNRIEV 431


>gi|330828094|ref|YP_004391046.1| GGDEF family protein [Aeromonas veronii B565]
 gi|328803230|gb|AEB48429.1| GGDEF family protein [Aeromonas veronii B565]
          Length = 296

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 9/178 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS---LGSYNEKLSIVFFDIDY 138
           + +++ +I ++ +    R+ + S  D L+GL N   F      L +      ++  DID+
Sbjct: 120 VAWVTRNITRQ-YELQQRLLRQSETDQLTGLYNRRFFFEHCQPLRAGEAPCGLIMLDIDH 178

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND +GH  GD+ +   S  +  +        R GGEEF        E     +A  
Sbjct: 179 FKQLNDRYGHQQGDRALQRFSSCIDALLRADDLFVRSGGEEFLILLPRIDEAGLLQMAEQ 238

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +R  +E    +      + IT+S G      +E I+  + RAD+ LY AK++GRNRV 
Sbjct: 239 IRAAVEALPAD-----PVAITVSLGTTLVQPEEEINQALARADEWLYRAKRAGRNRVA 291


>gi|290893121|ref|ZP_06556109.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J2-071]
 gi|290557283|gb|EFD90809.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J2-071]
          Length = 357

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 109/233 (46%), Gaps = 11/233 (4%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           F I+   ++ I       I L      E +   N+++ ++   I+L++G +S  ++  + 
Sbjct: 126 FKIWGVFILNIIACSFVVINLHLILARESLFWINMTIFVL---IALVIGAVSAGLMSNMI 182

Query: 95  IS---YNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFG 147
            S   + +  Q S +D L+ L N   F       + S + +++++  DIDYFK IND +G
Sbjct: 183 KSKQLFQKYEQDSTLDYLTKLSNVRQFDEKINHVMDSGSRQVTLMLIDIDYFKNINDTYG 242

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD ++  L+  L           R GGEEF+   L  S +E   +A  +RK  E   
Sbjct: 243 HDAGDAILKQLAVILKASTTDGSEAFRNGGEEFSIVLLDCSIEEGNKVAEQVRKETEEHD 302

Query: 208 INISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFS 259
             I  G  + ITIS G++        S  +   AD+ALY AK +GRNRV    
Sbjct: 303 FVIPGGQIVKITISVGVSSSKDGANTSEGLFKSADEALYKAKLTGRNRVCIAD 355


>gi|194364829|ref|YP_002027439.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
 gi|194347633|gb|ACF50756.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
          Length = 350

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 100/225 (44%), Gaps = 17/225 (7%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL----LGYISGSILKELFI 95
           AT+  +    L +  L    G  Y  + +   +++S+    +    L  +S  + + +  
Sbjct: 126 ATLALVLGFLLSWWAL----GFPYQPISSQRTIVLSVPFLFVYGIGLSILSWQLARRVKS 181

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGH 148
              ++ +LSR+D L  L N    I       +K         ++  D+D FK+IND+ GH
Sbjct: 182 QNRQLQRLSRMDPLVELANRGFLILRAQQVLDKAQGQGGFACLLMLDVDDFKRINDSHGH 241

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+V+  ++  L           RLGG+EF       + ++A  +A  +R  +  +  
Sbjct: 242 RAGDEVLRQIAATLREFARPGDIPARLGGDEFVVLLRDCTTRDAMHVAERIRLHLLEAAR 301

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            ++ G     ++S GIA    +  +   +  AD+ALY AK+ G+N
Sbjct: 302 QVAPGVEF--SVSIGIAATPGQGTVEDWLATADKALYHAKRQGKN 344


>gi|323491761|ref|ZP_08096938.1| GGDEF domain-containing protein [Vibrio brasiliensis LMG 20546]
 gi|323314017|gb|EGA67104.1| GGDEF domain-containing protein [Vibrio brasiliensis LMG 20546]
          Length = 474

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 87/185 (47%), Gaps = 11/185 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFF 134
           L  +S + ++E     N++  L+  D L+G  N  +F             +   L++V  
Sbjct: 289 LIIMSITDIEERKSLENKLRTLAATDALTGAFNRRSFQEQTERALSTCARWRAPLTVVLL 348

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FKQ+ND FGH  GD+V+  L   +         VGRLGGEEF      +       
Sbjct: 349 DIDHFKQVNDQFGHAAGDEVLIALVRHIQQSTRNMDVVGRLGGEEFGLVLPNTDSSLGFE 408

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSG 251
           +A  LR+ +E  +I     P + ITIS G+      +   P+  ++ R D  LY AK  G
Sbjct: 409 IAERLRREVEAMEIYHEDQP-LKITISLGMTTLSFTQLATPLEDVLARVDGYLYEAKSLG 467

Query: 252 RNRVV 256
           RN +V
Sbjct: 468 RNCIV 472


>gi|313497503|gb|ADR58869.1| GGDEF domain-containing protein [Pseudomonas putida BIRD-1]
          Length = 754

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 10/180 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNE---KLSIVFFDIDYFKQ 141
           +L +L  +   + Q +  D L+ LLN   F       L  +     +L+++F DID+FK+
Sbjct: 275 LLSQLDQARASLQQAAHYDALTNLLNRRGFNQVFAERLVEHQASENRLAVMFLDIDHFKR 334

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD+++  +++ +         V R GG+EF      +S  EA  LA  +  
Sbjct: 335 INDSLGHDAGDELLKVIANHIKAATRNHDLVARFGGDEFCVVTSLNSRDEARHLAQRIMH 394

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            ++   I++  G  + +T S GI+           ++  AD ALY +K +GRN +  F+D
Sbjct: 395 RMKE-PIDL-GGRRMVMTTSIGISIFPDDGSTAEELLKHADLALYQSKDNGRNSLNFFND 452


>gi|295400746|ref|ZP_06810723.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294977327|gb|EFG52928.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 842

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 103/219 (47%), Gaps = 21/219 (9%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L P   +   ++++   VI S+        I    + E      +I   +  D L+ L N
Sbjct: 375 LLPIAYVSTPMIDDNGEVIGSV--------IVFRNITERKKYDEKIKYQAYHDALTDLPN 426

Query: 115 HSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
               I  L         +N +++I++ D+D FK IND+FGH +GD ++  ++ +L ++  
Sbjct: 427 RRYLIEKLKNELKKAEEHNSRIAILYLDLDNFKNINDSFGHVMGDLLLKNVAQRLTMIH- 485

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
              F+ RLGG+EFA    G+      I    ++ +  N  I + +   + IT S GI+  
Sbjct: 486 PDCFIARLGGDEFAVLLSGNDFNIEEIACKTIQSL--NQPIKLEN-KEVFITTSVGISVY 542

Query: 228 C-HKEPISTIIYRADQALYVAKKSGRNRVVCFS-DIENN 264
               +   T+I  AD A+Y AKK G+N+   ++ ++E  
Sbjct: 543 PKDGDDEMTLIRHADMAMYDAKKKGKNQFSFYTAELEQQ 581


>gi|258622470|ref|ZP_05717492.1| GGDEF family protein [Vibrio mimicus VM573]
 gi|258585170|gb|EEW09897.1| GGDEF family protein [Vibrio mimicus VM573]
          Length = 338

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 107/220 (48%), Gaps = 21/220 (9%)

Query: 58  FYGLEYILVENLSLVIISITISLLLG----------YISGSI------LKELFISYNRIS 101
           F  LE +  E+LS+  +   I  L+           +++  +      +  L     ++ 
Sbjct: 117 FRELERVEQEDLSIEEVMTVIRRLISDSKDIRHSTNFLNNQLNAATHEISRLKEQLAQVQ 176

Query: 102 QLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           + +  D LSGL N  AF     +L   +  + ++  DID+FK +ND +GH  GD++I  +
Sbjct: 177 KDALFDSLSGLYNRRAFDGDMFTLIHADHPVCLIMLDIDHFKALNDTYGHLFGDQIIRAI 236

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217
           + +L  +    +   R GGEEFA      S + A   A  +R+ IE   + +  SG S+ 
Sbjct: 237 AKRLQSLCRDGVTAYRYGGEEFALITPNKSLRIARQFAESVRRSIEKLTVKDRRSGQSVG 296

Query: 218 -ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            IT S G+ E+   + + +++ RAD  LY AK  GRNRV+
Sbjct: 297 NITASFGVVEKIDGDSLESLVGRADGLLYEAKNLGRNRVM 336


>gi|291613497|ref|YP_003523654.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans
           lithotrophicus ES-1]
 gi|291583609|gb|ADE11267.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans
           lithotrophicus ES-1]
          Length = 428

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 11/183 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             + E   +  +I+ L+  D L+ L N +  +  L            K++++F D+D FK
Sbjct: 241 RDITERKKAEQKIAHLAHYDYLTDLPNRALMLDVLDHSVALAKRNKHKVAVLFIDLDGFK 300

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
            IND  GH  GD ++  +S +L         V R+GG+EF        S++ AA++A+ +
Sbjct: 301 NINDTLGHDAGDLLLKGVSGRLRQTIRGSDTVARVGGDEFIVVLDNVGSDRNAALVADKI 360

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
             I+  ++     G S  I  S GI+     E     +I  AD+A+Y+AK+SG+N     
Sbjct: 361 --IMSLTEAFDLKGTSSFIGASIGISLYPDDEKDSIKLIKLADEAMYLAKQSGKNTYRFS 418

Query: 259 SDI 261
            ++
Sbjct: 419 REV 421


>gi|158341558|ref|YP_001522722.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158311799|gb|ABW33408.1| diguanylate cyclase (GGDEF domain) [Acaryochloris marina MBIC11017]
          Length = 394

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 69/203 (33%), Positives = 103/203 (50%), Gaps = 11/203 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI----- 119
           LVEN   + + +   L        I ++LF +  ++S L+  D L+GL N   F      
Sbjct: 189 LVENNKKLELEVQAKLHAQQNLEIINEKLFEANKKLSLLANQDALTGLANRRYFDVYLQQ 248

Query: 120 --SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLG 176
              S       LSI+  DID+FK  ND++GHP GD  +  +S  +  V G    F  R G
Sbjct: 249 VWESAQENKHPLSILICDIDFFKGYNDSYGHPEGDHCLQRVSQIIHRVAGKSEGFAARFG 308

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHITISAGIAE--RCHKEPI 233
           GEEFA     ++  ++  +A+ LR  I N+++   +S  S ++T+S G+          I
Sbjct: 309 GEEFAIVLPNTNLIDSQTIADMLRSEIHNARLPHRASTVSEYVTVSIGVTSIQFQSDGSI 368

Query: 234 STIIYRADQALYVAKKSGRNRVV 256
           + +I RADQALY AKK GRN+ V
Sbjct: 369 NDLILRADQALYEAKKLGRNQFV 391


>gi|152996045|ref|YP_001340880.1| response regulator receiver modulated diguanylate cyclase
           [Marinomonas sp. MWYL1]
 gi|150836969|gb|ABR70945.1| response regulator receiver modulated diguanylate cyclase
           [Marinomonas sp. MWYL1]
          Length = 312

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 73/273 (26%), Positives = 124/273 (45%), Gaps = 24/273 (8%)

Query: 6   KDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVI-------FIANIFLFY------ 52
           ++ + ++L H ++L+       M Y + F ++     I       ++  IFL        
Sbjct: 36  QEAIDLFLEHSQDLDLILMDVQMPYINGFDAVKTIRKIQEQKNQEWLPVIFLSASAEDDD 95

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112
           I      G +  L++ +S  ++S    +L       + + L  S   + QL+  D L+G+
Sbjct: 96  IEGAILAGGDDYLMKPISQKVLS--AKMLAMQRIADMRRRLVDSNLALEQLASTDHLTGV 153

Query: 113 LNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N  +F   L         Y   +++  FD+D FK +ND FGH  GD V+  +S ++ + 
Sbjct: 154 ANRRSFELMLDREMSFTRRYGVPMALAMFDLDKFKLVNDTFGHDAGDAVLVEVSKRIKIA 213

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                 +GRLGGEEF        E +   + +  RKI+ +  I +  G  I IT S G+ 
Sbjct: 214 LRDCDIIGRLGGEEFGIILHNVKEDDVFKVFDRYRKIVADHPI-LYEGAEIPITASIGVT 272

Query: 226 ERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
               K E    ++ R DQ+LY AK +GRN+V+ 
Sbjct: 273 MYAGKLEDKVALLKRVDQSLYEAKATGRNKVIY 305


>gi|45601364|gb|AAS70845.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 312

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 60/182 (32%), Positives = 101/182 (55%), Gaps = 9/182 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           S L  + +  +R+ +L+ +D ++GL  H  F + L    ++       L+++F D+D FK
Sbjct: 130 STLAGIAVENSRLYELATVDMMTGLKVHHYFQTKLKEEMDRCRKKKSYLTLLFTDVDNFK 189

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           + ND  GH  GD+V+  ++ QL+   G      R GGEEF     G+  +    +   +R
Sbjct: 190 KFNDTHGHQAGDQVLIEVAKQLIRQAGKHDIPARYGGEEFCLVMPGADLERGYEMGEMIR 249

Query: 201 KIIENSQI-NISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           K +E+S + N + GP + +T+S G++E   K+     +I RAD+ALY AK SG+NR VC+
Sbjct: 250 KAVESSSVKNPNGGPDLKVTLSVGVSEFWPKDKNNRDLIERADKALYTAKNSGKNRTVCY 309

Query: 259 SD 260
            +
Sbjct: 310 KE 311


>gi|320160268|ref|YP_004173492.1| hypothetical protein ANT_08580 [Anaerolinea thermophila UNI-1]
 gi|319994121|dbj|BAJ62892.1| hypothetical protein ANT_08580 [Anaerolinea thermophila UNI-1]
          Length = 1423

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 98/229 (42%), Gaps = 18/229 (7%)

Query: 38   FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
            ++   IF     L  I +  F    +   E L   + +    + L     ++L     +Y
Sbjct: 1198 WMGVPIFAGERILGTIAVGRFKIRPFTHREQLLAQVYANQAGMAL---QNAMLH----AY 1250

Query: 98   NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
             ++  L+  D L+ L N   F       +     +   L +V  DID+FK++ND +GH V
Sbjct: 1251 QQV--LAITDPLTNLYNRRGFFELARHEMERSRRFGSPLVVVMADIDHFKRVNDTYGHSV 1308

Query: 151  GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
            GD+V+  L+ +L         + R GGEEF      S  Q     A  +R  +      I
Sbjct: 1309 GDEVLQELAQRLRETLREADLICRYGGEEFCLLLPESDLQSGYSAAERVRLAVAEKSFCI 1368

Query: 211  SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 + ITIS G+      ++ +  +I +ADQAL  AK  GRNRV  +
Sbjct: 1369 EE-LELPITISLGMTRLASPQQTLEELIEQADQALLHAKAFGRNRVEIW 1416


>gi|261339975|ref|ZP_05967833.1| putative GGDEF domain protein [Enterobacter cancerogenus ATCC
           35316]
 gi|288317893|gb|EFC56831.1| putative GGDEF domain protein [Enterobacter cancerogenus ATCC
           35316]
          Length = 410

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 76/174 (43%), Gaps = 11/174 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQ 141
            + E       +   +  D ++GLLN   F +     N       ++ S++  D D FK 
Sbjct: 238 DITEQKRLEQELEHAALRDSMTGLLNRRQFYAITEQTNPSHLPAQQQFSLLLVDTDRFKD 297

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH  GD+V+  LS  L        +V R GGEEF      +  + A  +A  +R 
Sbjct: 298 INDVFGHLKGDEVLISLSRTLEACCRKDDYVFRWGGEEFVLLLPRTPLETAMQIAETIRA 357

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + +  I          T+S G+A     E I  +  R D ALY AK  GRN+V
Sbjct: 358 TVAHITIPGLP----RFTVSIGVARHNQGENIDELFKRVDDALYRAKNDGRNKV 407


>gi|29829276|ref|NP_823910.1| integral membrane phosphodiesterase [Streptomyces avermitilis
           MA-4680]
 gi|29606383|dbj|BAC70445.1| putative integral membrane phosphodiesterase [Streptomyces
           avermitilis MA-4680]
          Length = 1045

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 16/194 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
            +   + E      ++   +  D L+ L N + F   +          +   +++F D+D
Sbjct: 550 FNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTKRVQQALSGRRTSDRGTAVLFIDLD 609

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE------ 191
            FK +ND  GH  GD+++   + +L           RLGG+EFAA  +G   ++      
Sbjct: 610 GFKAVNDTIGHQAGDELLVQAARRLQDAVRYGDTASRLGGDEFAALIVGDGTRDRTAREG 669

Query: 192 -AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
               LA+ LR  +  SQ     G  + +  S G+A          ++  AD A+Y AK +
Sbjct: 670 HIMELADRLR--VTLSQPYAIGGNDVRVAASIGVAFAEPGLGAGDLLRNADLAMYRAKAA 727

Query: 251 GRNRVVCFSDIENN 264
           G+ RV  ++     
Sbjct: 728 GKGRVELYAPQMQQ 741


>gi|73538174|ref|YP_298541.1| PAS:GGDEF [Ralstonia eutropha JMP134]
 gi|72121511|gb|AAZ63697.1| PAS:GGDEF [Ralstonia eutropha JMP134]
          Length = 707

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 73/183 (39%), Gaps = 9/183 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQ 141
               +   + +RI  L+  D L+GL N     +              L+I+F D+D FK 
Sbjct: 380 RDTTDRKQASDRIQHLAHYDALTGLPNRRLVENRARQAFSQASDGHTLAIMFLDLDLFKD 439

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH  GD  +  L+ +L  +      + R GG+EF      + E+ AA  A  +  
Sbjct: 440 INDTLGHSAGDASLIELARRLRPLLSEGDVLARFGGDEFLILLPDACERTAAQTAQKVLD 499

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            I   +        + ++ S GIA          ++   AD A+Y  KK GR     F+ 
Sbjct: 500 TIA--EPYHLGPYDLTVSGSIGIALYPRDGTDFESLSKNADTAMYHVKKQGRRGYCFFTP 557

Query: 261 IEN 263
              
Sbjct: 558 QMQ 560


>gi|91976391|ref|YP_569050.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91682847|gb|ABE39149.1| diguanylate cyclase [Rhodopseudomonas palustris BisB5]
          Length = 381

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 116/238 (48%), Gaps = 18/238 (7%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS---LVIISITISLLLGYISGSILK- 91
           S+   T +    + LF    TP    +  L+E L    ++++++   + +G  S ++ + 
Sbjct: 143 SVMCWTAMTGMLMVLFISTDTPLAMPQGSLLERLGTMLVLVLTVGRCMYIGMYSSALRES 202

Query: 92  ------ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
                 +L  +Y RI + + +D L+G  N           I+        LS+   D+D+
Sbjct: 203 LYKRGLQLREAYQRIEEFAELDELTGSYNRRCIMRMLDDEIARADRSAAPLSLALIDLDW 262

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND+FGHP GD+V+   +  +     +    GR GGEEF      +S  EA  + + 
Sbjct: 263 FKRINDSFGHPTGDEVLRTFAITIFANIRSFDRFGRYGGEEFLLLLPNTSRDEAHKMLDR 322

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           LR+I+E       S P + +T+SAG+      E    ++ RAD+ALY AK+ GRN++ 
Sbjct: 323 LREIVEELDWTAFS-PGMRVTLSAGVTAMAPNETAEAVLARADRALYAAKEDGRNKIA 379


>gi|172037524|ref|YP_001804025.1| hypothetical protein cce_2611 [Cyanothece sp. ATCC 51142]
 gi|171698978|gb|ACB51959.1| hypothetical protein cce_2611 [Cyanothece sp. ATCC 51142]
          Length = 685

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 90/193 (46%), Gaps = 11/193 (5%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEK 128
           I+  L++        + L     ++ +++  D ++ + N   F          +    + 
Sbjct: 205 ISTQLIMSIQQDQFYQHLSQINQKLEEIAFYDRITQIPNRHYFEHYFAQEWRRMAREKQP 264

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGS 187
           LS++  D+D+FK  ND FGHP GD+ +  ++  L   +      V R GGEEF A    +
Sbjct: 265 LSLIVCDVDFFKAYNDTFGHPQGDRCLQEVAYTLKYTLHRPGDMVARYGGEEFVAILPNT 324

Query: 188 SEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAE--RCHKEPISTIIYRADQAL 244
           +   A  +A  ++  I+  ++   +   S  +TIS G+A      ++    ++  AD+AL
Sbjct: 325 NASGAVHVAQQMQSAIKQLKVPSATQTVSEFVTISLGVASVIPSQEKSPKQLLNEADKAL 384

Query: 245 YVAKKSGRNRVVC 257
           Y AK+ GR++V  
Sbjct: 385 YEAKQKGRDQVFF 397


>gi|77920131|ref|YP_357946.1| GGDEF domain-containing protein [Pelobacter carbinolicus DSM 2380]
 gi|77546214|gb|ABA89776.1| GGDEF domain containing protein [Pelobacter carbinolicus DSM 2380]
          Length = 648

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 71/235 (30%), Positives = 108/235 (45%), Gaps = 16/235 (6%)

Query: 37  IFIATVIF--IANIFLFYIG--LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE 92
           IFIA+V    I  + +  +G  L+   G  Y L E   +  I + ++  LG    ++  E
Sbjct: 397 IFIASVAAGAIGVVHVLVLGGCLSCRPGFSY-LYEVGGIAGIGL-LACALGDSVKALQHE 454

Query: 93  ---LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
              L +S  R  +L+  D L+GL N   F + L          N+  +++  DID FK  
Sbjct: 455 REVLRVSERRHMELAFTDALTGLFNMRYFRTQLDLAIQCAEPLNQSFTLMMMDIDNFKLF 514

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD+V+  L   +  V        R GGEEFA    G   Q A  +   L+  
Sbjct: 515 NDRYGHLQGDQVLRQLGQMIGSVIREKDVACRYGGEEFAVILPGGDFQTAVDIYTRLQGT 574

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   Q +        +T+S G+AE    E    +I RAD A+Y AK+ GR+++V 
Sbjct: 575 LLQWQEHEKESLISLVTLSVGVAEYFPGEHADDLIARADSAMYEAKEGGRDQLVL 629


>gi|83859495|ref|ZP_00953016.1| Putative diguanylate cyclase (GGDEF domain) [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852942|gb|EAP90795.1| Putative diguanylate cyclase (GGDEF domain) [Oceanicaulis
           alexandrii HTCC2633]
          Length = 322

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 78/170 (45%), Gaps = 10/170 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPV 150
            R+   +  D L+G  N   F+ +L   ++         S++  D+D+FK+IND  GH  
Sbjct: 152 QRMRAEAETDALTGAYNRRVFMRTLEREHKRALDQALPFSVLMVDLDFFKKINDTHGHAS 211

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+      L  +   P  +GRLGGEEFA    G     A   A  LR  ++   +  
Sbjct: 212 GDRVLIKTVKTLKALLRPPAMLGRLGGEEFAVLLPGQDADMALQTAESLRLALQALHVEN 271

Query: 211 SSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVC 257
             G  I +T S G+A     +       ++  AD  LY AK+ GRN+V  
Sbjct: 272 DDGHPIPVTASMGLATLHAGDLESSGEKMLGEADAGLYKAKEGGRNQVCM 321


>gi|320328997|gb|EFW84996.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 653

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 101/241 (41%), Gaps = 15/241 (6%)

Query: 39  IATVIFIANIFLFYI--GLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL---KEL 93
           +A   F    F   +  GL+       +LV +LS++ I++   +L  ++          L
Sbjct: 143 MAAATFADGSFCGALPDGLSSNGLDRIVLVASLSILGIALFSCILDSHLETRTAVPANSL 202

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNF 146
             +   ++ L+  D L+GL N       +    +K        +++F D+D FK +ND F
Sbjct: 203 TEANQELTHLALHDNLTGLPNRVLLTDRIEQAMKKVSESGGCFALMFMDLDGFKPVNDAF 262

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD ++  ++ +L         + R+GG+EF         Q+A  +A   R++ E  
Sbjct: 263 GHHTGDLLLRQVALRLRNNLHRHDTLARIGGDEFVLLVELHDPQDALAVAT--RQVNEIG 320

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                    + I++S GI     +      ++  AD A+Y  K +G+N    F    N+ 
Sbjct: 321 NPFTIGEHQLQISLSIGICMYPGNGNTQHELLINADAAMYHTKAAGKNGYSFFDASMNSN 380

Query: 266 C 266
            
Sbjct: 381 A 381


>gi|320354403|ref|YP_004195742.1| diguanylate cyclase [Desulfobulbus propionicus DSM 2032]
 gi|320122905|gb|ADW18451.1| diguanylate cyclase [Desulfobulbus propionicus DSM 2032]
          Length = 569

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 63/258 (24%), Positives = 108/258 (41%), Gaps = 28/258 (10%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL--EYILVENLS--LVIISITISLLLG 83
           M Y S    +    ++ I +  L  + L P   L    I +E      +++ +  +  +G
Sbjct: 278 MRYASALVVVSGLIILLILSAVLHQVILRPVQRLTEHAIRLEQGEEHRLLLDLERNDEIG 337

Query: 84  YISGSI----------LKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYN 126
            ++ S+           K+L  +  ++  LS +D L+G+ N   F               
Sbjct: 338 RLAHSLDTMVQTISQRTKDLKEANEQLIWLSMLDGLTGIANRRMFDLNIKKEWRRAMRDQ 397

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAAL 185
             LS++  D+D+FK  ND +GH  GD+ +  ++  L   V        R GGEEF     
Sbjct: 398 TPLSLILLDVDFFKGYNDTYGHLQGDQCLIRVASSLQQQVHRPSDLAARYGGEEFVLVLP 457

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAER-----CHKEPISTIIYR 239
            +S + A +LA  +R  ++   I   +   S  ++IS G+             +   +  
Sbjct: 458 NTSAEGAMLLAERVRSAVQALAIEHRASQVSPFVSISLGVVTTVPPVEREDGAMHEFLAL 517

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD+ALY AK+ GRNR V 
Sbjct: 518 ADKALYQAKQQGRNRAVF 535


>gi|294341431|emb|CAZ89848.1| conserved hypothetical protein; putative PAS/PAC, EAL, GGDEF
           domains [Thiomonas sp. 3As]
          Length = 681

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 10/180 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           I    ++E      R+   +R D L+  LN    +  LG             S +  D+D
Sbjct: 246 IVLRDVREQRALQARLHHQARHDALTQALNRVGMLDELGRTHAGFLRTGATFSNILLDLD 305

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK++ND  GH  GD+ +  ++  +         + R GGEEF      +S ++A  +A 
Sbjct: 306 HFKRVNDQHGHAAGDEALRLVARAIQGALRADDHLARWGGEEFLCLLPHTSLEQAIAIAE 365

Query: 198 DLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +R  ++  ++       I +TISAG+  A     + +  ++ RAD +LY AK++GRN V
Sbjct: 366 RIRAEVQALELK-QGRQPIPLTISAGVSAASPDRGDTLEQMLQRADFSLYEAKQAGRNCV 424


>gi|260899788|ref|ZP_05908183.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|308110403|gb|EFO47943.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 337

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 64/208 (30%), Positives = 107/208 (51%), Gaps = 11/208 (5%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSI------LKELFISYNRISQLSRIDCLSGLL 113
            +E ++V    LV  S  I     +++  +      +  L      + + +  D LS L 
Sbjct: 128 SIEEVMVVIRQLVAESHEIRHSTKFLNRQLTNASEEISRLKNQLAEVQKDALFDGLSNLY 187

Query: 114 NHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           N  AF + L    + N+ ++++  DID+FK  NDN+GH  GD V+  ++ +L       +
Sbjct: 188 NRRAFDTDLSMLINANQAMTLILLDIDHFKAFNDNYGHLFGDTVLKAIARRLQQSCRDGV 247

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH-ITISAGIAERC 228
              R GGEEFA      S + A   A+ LR++IE  ++ +  SG  +H IT S G+AE  
Sbjct: 248 SAYRFGGEEFALIVPNKSLRIARQYADTLRRMIEKLRVRDKRSGTQVHSITASFGVAEFE 307

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256
             + + +++ +AD+ LY AK+ GRNRV+
Sbjct: 308 VGDTVDSLVNKADKQLYEAKQLGRNRVM 335


>gi|209525642|ref|ZP_03274180.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Arthrospira maxima CS-328]
 gi|209493975|gb|EDZ94292.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Arthrospira maxima CS-328]
          Length = 612

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 10/187 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDY 138
              + E    +NR+   +  D L+GL N   FI+ L    ++          ++F D+D 
Sbjct: 159 QRDVTERQNQHNRLIYEANHDSLTGLYNRGYFITELQKAIDRTQNCQDYLFGLLFMDVDR 218

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAN 197
           FK IND+FGH  GD+++  + D+L         + R GG+EFA          E + L N
Sbjct: 219 FKLINDSFGHQAGDQLLIEIGDRLQSCIRPQDILSRWGGDEFAIIIDDIQDLSEISQLTN 278

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
            +++ I+   I          ++S GIA         + ++  AD ALY AK  G+    
Sbjct: 279 KIQQTIKKPIILGEDHLETVTSLSIGIALSSMGYNCSADMLRDADTALYRAKDRGKGSYA 338

Query: 257 CFSDIEN 263
            F+   +
Sbjct: 339 IFTQAMH 345


>gi|187477502|ref|YP_785526.1| signaling protein [Bordetella avium 197N]
 gi|115422088|emb|CAJ48612.1| putative signaling protein [Bordetella avium 197N]
          Length = 429

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 81/176 (46%), Gaps = 11/176 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHS---AFISSLGSYNEK----LSIVFFDIDYFKQ 141
            + +       +S+  R D L+GLLN     A I  L     +     S++  DID+FK+
Sbjct: 250 DISQFVAREKLLSKQVRSDALTGLLNRRGAAAKIQRLHRAAHQSGRFYSVIMADIDHFKK 309

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH +GD V+   ++ +         V R GGEEF          +A  LA  +R 
Sbjct: 310 INDQFGHLLGDTVLKRCANLIRDNVREGDAVARWGGEEFLILLPNCPLIKAVALAERIRN 369

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I      I+      +T+S G+      E   ++I RAD+ALY AK  GRN+V  
Sbjct: 370 TIATLTDPITG----QVTLSLGVGTSSPAETPQSLIQRADKALYKAKAQGRNQVAI 421


>gi|319788275|ref|YP_004147750.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Pseudoxanthomonas suwonensis 11-1]
 gi|317466787|gb|ADV28519.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Pseudoxanthomonas suwonensis 11-1]
          Length = 887

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 10/186 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFD 135
            +  + + E      R+   +  D L+GL N   F   L           +   ++++ D
Sbjct: 436 LMVANDVSEQRKLTERLGYQAAHDELTGLYNRREFERRLQKALATLEKDPSASFAVLYID 495

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D FK +ND  GH  GD+++  L   +         + RLGG+EF   A  +   +A  L
Sbjct: 496 LDQFKLVNDLSGHMAGDQLLVELVHAMREQLRPQDLLARLGGDEFGLLAPATGAAQARAL 555

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
           A  +R  IEN       G +  ++ S G+         +  I+  AD A Y AK++GRNR
Sbjct: 556 AERMRDCIENVVFPW-EGRTYTVSASIGVVVAGETGATLKDILAWADSACYQAKENGRNR 614

Query: 255 VVCFSD 260
           V  + +
Sbjct: 615 VHIYRE 620


>gi|315267724|gb|ADT94577.1| diguanylate cyclase with extracellular sensor [Shewanella baltica
           OS678]
          Length = 936

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 92/208 (44%), Gaps = 12/208 (5%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
              L YI+   + L ++ + + LL+       + +  ++  R+  ++  D L+ L N + 
Sbjct: 730 LQWLRYIVFGVIILCLVMVAV-LLVNRRLNREITQRLVAEKRLLHVANHDALTQLPNRAL 788

Query: 118 FISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
               L              +++F D+D FKQIND  GHP+GD+++  ++ +L  V     
Sbjct: 789 LDDRLAQALLSHQREQAHFALLFVDLDGFKQINDQHGHPIGDELLIQVAQKLTKVIRGSD 848

Query: 171 FVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC- 228
            V R GG+EF            A  +A+++ + +  S   +  G S+ I +S G+     
Sbjct: 849 TVARFGGDEFVILLNRVQDLDAATQVADNILQAL--SSPLLIQGVSVSIAVSMGVVIYPR 906

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256
             +    ++ +ADQ +Y AK  G     
Sbjct: 907 DGDTAIGLLKKADQLMYQAKSCGGRCYR 934


>gi|229075753|ref|ZP_04208730.1| Sensory box/GGDEF family protein [Bacillus cereus Rock4-18]
 gi|228707305|gb|EEL59501.1| Sensory box/GGDEF family protein [Bacillus cereus Rock4-18]
          Length = 430

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 85/176 (48%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          +EK++I+ FD+D FK +
Sbjct: 254 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEVEWDNVIRNDEKMAIILFDVDNFKTV 313

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L++ +           R GGEEF      + E+EA  +A  LR  
Sbjct: 314 NDTYGHDFGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 373

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE  Q +  S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 374 IETKQFSGIS----KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCIY 425


>gi|134291097|ref|YP_001114866.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia vietnamiensis G4]
 gi|134134286|gb|ABO58611.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia vietnamiensis G4]
          Length = 837

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           S + +   +  R+  L+  D L+ L N + F   L            K+++++ D+D FK
Sbjct: 389 SDITQRRQAEERLGYLATHDVLTNLANRALFEERLARSIVQAKRLGRKVAVMYVDLDRFK 448

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            +ND  GH  GD+V+  ++ ++     +   V R+GG+EFA         ++   +A +L
Sbjct: 449 LVNDTLGHNAGDEVLKVVAGRIAGQVLSNDTVARMGGDEFAIVLEEFDDVRDVGRIARNL 508

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
              +  S I I  G  I +T S GI+           ++  ADQA+Y AK  GRN    F
Sbjct: 509 LDEVGQS-IEI-EGREIFVTPSIGISIYPDDGIDAEHLLLLADQAMYGAKNRGRNVFQFF 566

Query: 259 SDIENNTC 266
                ++ 
Sbjct: 567 ESKMTSSA 574


>gi|312622266|ref|YP_004023879.1| diguanylate cyclase with gaf sensor [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202733|gb|ADQ46060.1| diguanylate cyclase with GAF sensor [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 557

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 9/185 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFFDIDYFKQ 141
           SI  E    Y ++  ++ +D L+G  N       L    +       +SI  FD+D FK+
Sbjct: 373 SIALENSSLYQQMRSMAMVDGLTGAFNRIYLYEVLEREIQASAGRYPISIALFDVDNFKK 432

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH  GDKV+  +             V R GGEEF          EA  +   +R+
Sbjct: 433 LNDTYGHLFGDKVLQTIVRIAKERVRKGDIVARYGGEEFIIVFNHLESNEAYKVVERIRR 492

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS- 259
            IE+  I   +     +T+S GIA    H + +  +I  AD A+Y AK SG+N  V ++ 
Sbjct: 493 AIESETIE-DNLIQTRVTVSFGIASYPLHADNVKDLIKCADIAMYRAKSSGKNCTVVYNQ 551

Query: 260 DIENN 264
           ++E  
Sbjct: 552 ELEMK 556


>gi|261216868|ref|ZP_05931149.1| predicted protein [Brucella ceti M13/05/1]
 gi|261319735|ref|ZP_05958932.1| predicted protein [Brucella ceti M644/93/1]
 gi|260921957|gb|EEX88525.1| predicted protein [Brucella ceti M13/05/1]
 gi|261292425|gb|EEX95921.1| predicted protein [Brucella ceti M644/93/1]
          Length = 391

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS--- 130
           L++G I+     I  +   +  R++  +  D L+ L N       ++   S  + LS   
Sbjct: 197 LMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGKLLTQKKSARDGLSRDG 256

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSS 188
            ++  D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF      G+S
Sbjct: 257 FLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTS 316

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++  I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK
Sbjct: 317 KEQTDIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAK 375

Query: 249 KSGRNRVVCFSD 260
             G+NR   F +
Sbjct: 376 SKGKNRFEYFEE 387


>gi|238764916|ref|ZP_04625855.1| hypothetical protein ykris0001_150 [Yersinia kristensenii ATCC
           33638]
 gi|238696857|gb|EEP89635.1| hypothetical protein ykris0001_150 [Yersinia kristensenii ATCC
           33638]
          Length = 381

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 13/177 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           +L  +  R+   +R D L+ L N   F              +  L+++  DIDYFK  ND
Sbjct: 198 KLIKANRRLEIQARTDSLTKLPNRREFKKVLAHEFMRARRSSSPLAVLMIDIDYFKNFND 257

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  L      +   V R GGEEFAA    +  + A+++A  + + I
Sbjct: 258 CYGHISGDACLRLVARALRKSLKRSTDIVARYGGEEFAAILPDTDPKGASLVAEHILQSI 317

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNRV 255
               I         +TIS G+     +        + ++  ADQALY +KK+GRN+ 
Sbjct: 318 RAMGIKHGESKFRKVTISLGVTVYQSQLHSSITDQADLVQTADQALYYSKKNGRNQF 374


>gi|209525303|ref|ZP_03273845.1| diguanylate cyclase with PAS/PAC and GAF sensors [Arthrospira maxima
            CS-328]
 gi|209494318|gb|EDZ94631.1| diguanylate cyclase with PAS/PAC and GAF sensors [Arthrospira maxima
            CS-328]
          Length = 1068

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 86/179 (48%), Gaps = 11/179 (6%)

Query: 92   ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144
            +    Y ++ +L+ +D L+ + N   F + L +           +S++  D+D+FK  ND
Sbjct: 888  QQAELYQQLERLATLDGLTQVPNRRQFDTYLITEWRRCIREFTPISLILCDVDFFKHYND 947

Query: 145  NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KI 202
             +GH  GD+ +  ++  L   +      V R GGEEFA     +  +    +A  +R +I
Sbjct: 948  TYGHQEGDRCLQEVAQALTRSIRRPGDLVARYGGEEFAIILPNTDAEGMCNVAGTIREQI 1007

Query: 203  IENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++  +I+ +S  S +I++S G           +  +I  AD ALY AK  GR+R V  +
Sbjct: 1008 LQLQRIHETSPISEYISVSMGGVSVLPNSNMQLEHLISMADTALYQAKAQGRDRFVMHT 1066


>gi|149377694|ref|ZP_01895430.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter algicola DG893]
 gi|149358047|gb|EDM46533.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter algicola DG893]
          Length = 364

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 70/250 (28%), Positives = 105/250 (42%), Gaps = 18/250 (7%)

Query: 24  PHTFMIYFSIFFSI-----FIATVIF--IANIFLFYIGLTPFYGLEYILVENLSLVIISI 76
           P  F ++  + F +       A ++F  +  + +F     P    EY     +       
Sbjct: 103 PLWFYVFPPLLFYLTDLKTGTAVLLFCCLLAVVVFQFPELPLVTAEYSTDFKIRFFATLT 162

Query: 77  TISLLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYN 126
             S+    +  S LK   EL          +R D L+GL N       L           
Sbjct: 163 FESIFCFVLEASRLKARNELMELARTHQHAARTDELTGLSNRRDMQHRLNEEYSRYRRSG 222

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
              SIV  D+D FK+IND++GH  GD V+   S  +  V        R GGEEF      
Sbjct: 223 HHFSIVLIDLDLFKRINDDYGHDAGDHVLRAFSQLMETVIRQTDVAARWGGEEFLILLPD 282

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
           +S  +A  LA  LR  + +++ +  +G S+ +TISAGI        +  ++ +AD  LY 
Sbjct: 283 TSLLQALTLAERLRSEVASAEFSF-AGQSMPVTISAGICSIAKTSSVDELLKQADVHLYN 341

Query: 247 AKKSGRNRVV 256
           AK+ GRNRV 
Sbjct: 342 AKQDGRNRVA 351


>gi|121607371|ref|YP_995178.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Verminephrobacter eiseniae
           EF01-2]
 gi|121552011|gb|ABM56160.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Verminephrobacter eiseniae EF01-2]
          Length = 981

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/188 (29%), Positives = 89/188 (47%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
             +     +  RI +L+  D L+ L N                    +L+++F D+D+FK
Sbjct: 540 RDISLQREAQERIQRLAHFDPLTDLPNRVLLAERTQRQIAQEQARGGQLALLFLDLDHFK 599

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND+ GH +GD ++  ++ +L  + G    V RLGG+EF      +S   AA +A+ L 
Sbjct: 600 NVNDSLGHRIGDILLVAVARRLQSLIGPQDTVSRLGGDEFLLLLPATSAAHAAKVASALL 659

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +   Q        +  T+S GIA      E   T+  RAD A+Y AK+SGRNR   F+
Sbjct: 660 TAVA--QPFQIDPYELSTTLSVGIAMCPADGESFDTLYQRADAAMYSAKQSGRNRYGFFT 717

Query: 260 -DIENNTC 266
            D++  T 
Sbjct: 718 ADLQARTA 725


>gi|154248589|ref|YP_001419547.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Xanthobacter autotrophicus Py2]
 gi|154162674|gb|ABS69890.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Xanthobacter autotrophicus Py2]
          Length = 864

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 10/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           +++ E   + +RI+ L+ ID L+GL N    I SL          +E L+++  D+D+FK
Sbjct: 398 ALVLERSEARDRIATLASIDALTGLPNRRRLIESLGDLIAEAAERDEPLAVMMLDVDHFK 457

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +N+  GH  GD+++  ++ +L     T   VGR GG+EF       + +EAA +A  L 
Sbjct: 458 DVNETLGHSTGDELLVEMARRLQAQLRTGDTVGRTGGDEFVVVVHDCAAEEAARIARRLI 517

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +       +    + ++ S GIA    H     T++  AD A+Y AK   R R   F+
Sbjct: 518 DYLSAPIP--AQKLHLTMSASVGIALYPQHGTSAETLLRHADTAMYEAKSKARGRFQFFT 575

Query: 260 DIENN 264
           +  N 
Sbjct: 576 EDLNK 580


>gi|320174306|gb|EFW49461.1| hypothetical protein SDB_03188 [Shigella dysenteriae CDC 74-1112]
          Length = 261

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 89  DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 147

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 148 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 207

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 208 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 258


>gi|304407404|ref|ZP_07389057.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9]
 gi|304343845|gb|EFM09686.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9]
          Length = 525

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 10/177 (5%)

Query: 84  YISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDID 137
           +++G+++K    L    + +S  +R D L+GL N +     L          +++  DID
Sbjct: 348 HLAGAMMKAVQGLQTQADEMSLQARTDSLTGLANRTGLEEWLTERRSVPGGYTLLVIDID 407

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK +ND FGH  GD+ +  L+  L    G    V RLGGEEF      +S     +LA 
Sbjct: 408 HFKSVNDKFGHHTGDETLVHLAHILQAESGADDLVCRLGGEEFIVLLPAASLDTGTMLAE 467

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            +R+  E S     S     IT+S G+A+         +  RADQALY AK++GRNR
Sbjct: 468 RVRRQTERSISPTGS----PITVSIGVAQCVDAVDFEQVFQRADQALYEAKRTGRNR 520


>gi|300694565|ref|YP_003750538.1| signal transduction ggdef domain transmembrane protein [Ralstonia
           solanacearum PSI07]
 gi|299076602|emb|CBJ35938.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum PSI07]
          Length = 505

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 86/198 (43%), Gaps = 12/198 (6%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLG 123
           +V++   + + +  +    L+    +  +++ L+  D L+GL    A             
Sbjct: 297 IVLLLDAVLIGMSILFAKQLRRRMEAEQKLAWLANTDGLTGLGTRRALDAALGAEWQRAN 356

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAA 182
              + L+++  D+D FK  ND +GH  GD  +  ++  +   +     F GR GGEEF  
Sbjct: 357 RQGQPLAVLMIDVDEFKHYNDRYGHAAGDTALRTVARCVNESIRRPGDFAGRYGGEEFCV 416

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH----KEPISTIIY 238
               +    A  +A  +R  +  +    +S     +T+S G+A         E  + +++
Sbjct: 417 LLPNTDLPGAQRVAEAIRSRVLAAGEPNASSAHGRLTVSIGVAAHDGRAETGETPARLLH 476

Query: 239 RADQALYVAKKSGRNRVV 256
           RAD  LY AK  GRN V+
Sbjct: 477 RADLQLYEAKSGGRNIVM 494


>gi|167032364|ref|YP_001667595.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida GB-1]
 gi|166858852|gb|ABY97259.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida GB-1]
          Length = 818

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 14/189 (7%)

Query: 83  GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS 130
           G +SG +L    ++  R     +S  +  D L+GL N   F   L            + S
Sbjct: 348 GQVSGIVLVLHDMTQERQYIANLSWQATHDALTGLANRREFEYRLEQALNGLARQAGRHS 407

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F D+D FK +ND  GH  GD+++  +   L         + RLGG+EF          
Sbjct: 408 LMFLDLDQFKLVNDTCGHAAGDELLRHICAVLQSGLREGDTLARLGGDEFGVLLENCPPD 467

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKK 249
           +A  +A  LR+++++    +  G     T+S G+         +   +  AD A Y+AK+
Sbjct: 468 QAERIAEQLRQMVQSLHF-VWKGRPFVTTVSIGLVHMAQAPGTLEASLRAADMACYMAKE 526

Query: 250 SGRNRVVCF 258
            GRNRV  +
Sbjct: 527 KGRNRVQVY 535


>gi|73541842|ref|YP_296362.1| GGDEF [Ralstonia eutropha JMP134]
 gi|72119255|gb|AAZ61518.1| GGDEF [Ralstonia eutropha JMP134]
          Length = 411

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 73/279 (26%), Positives = 115/279 (41%), Gaps = 36/279 (12%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIF-----------------------FSIFIATVIFIA 46
             WL H   LE   P    +                             +     VI  A
Sbjct: 110 GTWLTHADWLEPLRPWMPAVLRLGHVLLLLDLARSVAPLLAQKRGTGRLAALSLVVIAAA 169

Query: 47  NIFLFYIGLTPFYGLEYI---LVENLSLVIISITISLLLGYISGSILKELFISYNRISQL 103
              L    L    G   +   L+ + SLV++++   + L      +  +       +   
Sbjct: 170 CAGLNAWKLAGSIGQPAVAGPLLRDGSLVVLNVFAVVGLSVSFALMAHDRLRRM--LEHK 227

Query: 104 SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  D L+GLL  +AF  +L         + + L++ F D+D+FK IND +GH  GD V+ 
Sbjct: 228 ASHDDLTGLLARTAFWQALEAASTHVDRHGKPLTVAFIDLDHFKAINDVYGHLAGDSVLR 287

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             +  L    G    +GRLGGEEFA     ++ +    ++  L   + N+    S   +I
Sbjct: 288 HFAGLLRKTAGPEDIIGRLGGEEFAVVMPDTTIERGRAVSMHLSTTVRNTPCP-SEPDAI 346

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             T S G+A+R   E + +++ RADQALY AK+ GRN V
Sbjct: 347 AYTASIGMAQREPGESVDSLMRRADQALYDAKQRGRNCV 385


>gi|26990637|ref|NP_746062.1| GGDEF domain-containing protein [Pseudomonas putida KT2440]
 gi|24985623|gb|AAN69526.1|AE016586_5 GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 402

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 63/249 (25%), Positives = 115/249 (46%), Gaps = 18/249 (7%)

Query: 24  PHTFMIYFSIFFSIFIATVIFI---ANIFLFYIGLTPFYGLEYILVENLSLVIISITISL 80
           P   +++ +  +S F+ +++ +   + + +        + +        +L+   + I++
Sbjct: 145 PIAALLWCAWTYSPFLVSLLTLTAGSTLIVAVAQNLMHFSVPQSEPGVTTLMSARLGIAM 204

Query: 81  LLG--YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---------KL 129
           L+    +   + +       R++  + +D L+G+L  SAF     +  E          L
Sbjct: 205 LVLGPLVVACVSQANRSLMARLAHQATVDHLTGVLTRSAFTRRANALLESRQQHAQALPL 264

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID+FK IND  GH VGD+V+   +  L         + RLGGEEF     G + 
Sbjct: 265 TLMMLDIDHFKSINDAHGHAVGDQVLRQFASTLQDQLHNDELIARLGGEEFVVILPGLAP 324

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYV 246
           + A   A  LR+ I++  +   +   + IT+S G+A      P   +  ++  ADQALY 
Sbjct: 325 ERANFTAERLRRAIQDLHVT-QADQRLQITVSIGVAGCDADMPAPSLDELLASADQALYR 383

Query: 247 AKKSGRNRV 255
           AK  GRNRV
Sbjct: 384 AKARGRNRV 392


>gi|313682759|ref|YP_004060497.1| response regulator receiver modulated diguanylate cyclase with
           pas/pac sensor [Sulfuricurvum kujiense DSM 16994]
 gi|313155619|gb|ADR34297.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Sulfuricurvum kujiense DSM 16994]
          Length = 444

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 91/185 (49%), Gaps = 11/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
           + K+L +   +++ LS  D L+ L N     + +    E+         I F D+D+FK+
Sbjct: 254 VQKQLILETKKLTHLSMHDSLTQLPNRRLLENRINHAIEQKNRSGGGFGIFFIDLDHFKE 313

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILANDLR 200
           IND+ GH +GD+++  ++ ++  V      + R GG+EF      G+S+   A +A  + 
Sbjct: 314 INDSLGHLIGDELLIQIAKRIQKVIRKADTIARNGGDEFVLIIDSGASDAHYATVAEKIL 373

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +  +     G  I+   S GI+      + + T+++ AD A+Y +KK+GR +   + 
Sbjct: 374 NLFQ--EPFRIDGYEINSACSIGISMFPKDGQSVETLLHHADIAMYASKKAGRQQFSFYH 431

Query: 260 DIENN 264
             E+ 
Sbjct: 432 SYESK 436


>gi|285019719|ref|YP_003377430.1| signal transduction protein [Xanthomonas albilineans GPE PC73]
 gi|283474937|emb|CBA17436.1| hypothetical signal transduction protein [Xanthomonas albilineans]
          Length = 334

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 105/259 (40%), Gaps = 26/259 (10%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL 69
            I L H     S     F   F   +++ + + I        +    P   ++Y      
Sbjct: 85  GIMLWHHGRKISCMAARFTAIFHFLWALMLLSRI-------GWWSTHPNVDIDYDPTSTF 137

Query: 70  SL----VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS---- 121
            L    V+ SI     L  ++  +  EL          +  D L+G+ N           
Sbjct: 138 GLLSRMVLTSIITPGFLWMLTHKMNDELIRH-------ASQDALTGVANRRVMWQHGESS 190

Query: 122 ---LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                  +E ++++  DID FK IND  GH VGD  +  +++ +      P  + R+GGE
Sbjct: 191 AQEARRKSEPVAVLMVDIDNFKAINDRHGHAVGDIALVTIANLMSQQIHRPDLLARVGGE 250

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTII 237
           EF        E     LA  LR+ IE+  +   SG ++  T+S G       +    T++
Sbjct: 251 EFMILVPHGDEAAVHALAERLRRTIESQPVPEPSGDTLTCTVSIGYCISIQAQAEWQTLV 310

Query: 238 YRADQALYVAKKSGRNRVV 256
             ADQALY +K++GRNRV 
Sbjct: 311 VAADQALYTSKRNGRNRVT 329


>gi|190576092|ref|YP_001973937.1| putative transmembrane GGDEF signalling protein [Stenotrophomonas
           maltophilia K279a]
 gi|190014014|emb|CAQ47654.1| putative transmembrane GGDEF signalling protein [Stenotrophomonas
           maltophilia K279a]
          Length = 524

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 106/251 (42%), Gaps = 17/251 (6%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILV------ENLSLVII 74
           +  P + ++   I+ +I +  +  +   +       P + L   +         +S V  
Sbjct: 274 TLQPLSRLMTAVIWNAIPLGLLSLLITWWFARRISMPLWQLARNVQGGEDTGNAISHVSG 333

Query: 75  SITISLLLGYISGSILKELFISYNR---ISQLSRIDCLSGLLNHSAFISSLGS---YNEK 128
                  +  +  ++L       +R   +++ SR D L+ LLN      +L +       
Sbjct: 334 IRAWYFEVAQLKQAVLHSFNALQDRIGTLNRASRTDPLTSLLNRRGLQQALDALQVQGIP 393

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            +I+  DID FK INDN GH VGD  I  +++Q+         + R GGEEF     G S
Sbjct: 394 FAILALDIDRFKSINDNHGHDVGDAAIVHIANQMRRYSRDSDILCRAGGEEFLLLLPGIS 453

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVA 247
            + A      LR+ I +        P   IT+S G+A            +  AD+ALY+A
Sbjct: 454 AESARQAGERLRQHIADHPFE----PVGTITVSLGVAHFPSFHVDAEQALRLADKALYLA 509

Query: 248 KKSGRNRVVCF 258
           K+ GRNRVV +
Sbjct: 510 KEQGRNRVVVY 520


>gi|134096339|ref|YP_001101414.1| hypothetical protein HEAR3185 [Herminiimonas arsenicoxydans]
 gi|133740242|emb|CAL63293.1| Conserved hypothetical protein; putative GGDEF domain
           [Herminiimonas arsenicoxydans]
          Length = 412

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 63/256 (24%), Positives = 112/256 (43%), Gaps = 24/256 (9%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYIL--------VENLSLVI 73
           F P  F+I   +       T++ +A I L  +G        Y+         +E++ L++
Sbjct: 151 FVPFLFLIMAFVMPRFLPRTILLLAVITL--VGYASVVAAHYVRHGSNAIFALESMQLLV 208

Query: 74  ISITIS--LLLGYISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLGSYNE- 127
           +++T+    LL      +   LF +  +I  +   ++ D L G  N    +++L      
Sbjct: 209 LAVTLPGFALLADRVQRLHNALFKANRKIRNIEEDAQRDALLGCFNRRYIVAALEQQKRL 268

Query: 128 ------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                  L +   D+D+FK+IND  GH  GD+V+   +             GR GGEEF 
Sbjct: 269 ADDAGTPLCLAVIDLDHFKRINDEAGHLGGDEVLRTFARIAQDNVRAGDIFGRYGGEEFL 328

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                +S   A  +A  +R+ +E  +          +T+S G+ ++   E +  +  R D
Sbjct: 329 LVLPDTSLLAALNVAERIREQVE--RFAWDKKLRNRVTVSIGLTQQIPGESVLDLFSRTD 386

Query: 242 QALYVAKKSGRNRVVC 257
            A+Y+AK+ GRN+VV 
Sbjct: 387 TAMYMAKQGGRNQVVV 402


>gi|119899156|ref|YP_934369.1| GGDEF/PAS/PAC-domain-containing protein [Azoarcus sp. BH72]
 gi|119671569|emb|CAL95482.1| GGDEF/PAS/PAC-domain containing protein [Azoarcus sp. BH72]
          Length = 342

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 101/234 (43%), Gaps = 9/234 (3%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLLLGYISGSI-LKELFIS 96
            V  +A++   Y  +      E+ L E   +L  ++ + T  L       S  + +L  S
Sbjct: 109 VVTALADVTALYDTIDRLRDSEHRLQELNADLEHLVAARTAELAERNRELSDAVAKLEAS 168

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDK 153
             R+  L+  D L+GL N +     L           ++F D+D FK +ND  GH  GD 
Sbjct: 169 RARVEHLALHDPLTGLPNRTQLRQVLDEMLALPGSFGVLFIDLDGFKPVNDTLGHDSGDL 228

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  ++ +L        FVGRLGG+EF A    +    A  +   L   +  + I I  G
Sbjct: 229 VLVTVAQRLREALPAECFVGRLGGDEFVAVLPHTDRAAACAVGEKLIAALA-APIVIEGG 287

Query: 214 PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
               +  S G+A    H     +++  AD+A+Y AK+SG+ RV    +    + 
Sbjct: 288 AQCQLGASIGVALGPQHGRNRRSLLTAADRAMYAAKRSGKGRVAVAGEDSAASA 341


>gi|94265222|ref|ZP_01288983.1| GGDEF:GAF [delta proteobacterium MLMS-1]
 gi|93454312|gb|EAT04622.1| GGDEF:GAF [delta proteobacterium MLMS-1]
          Length = 376

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 17/173 (9%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFG 147
             Y   S  +  D L+GL N     + L             L+++  D+D+FKQ ND  G
Sbjct: 213 RRYEEKSAEAGQDVLTGLANRRQLNTELERDWATAQREKSSLAVIMLDLDHFKQYNDTHG 272

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+++  +   +           R GGEEF      + +  A  +A  LR+ +    
Sbjct: 273 HLAGDRLLREMGQIMRDCVRCEDLPVRYGGEEFLVLLRRAGDARAEAVAERLREAVAART 332

Query: 208 INISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                     +T+S G+A    +      ++ RAD+ALY AK+ GRNRV  +S
Sbjct: 333 ---------EVTVSLGVAGSNQNDHDPWQMVQRADEALYQAKQQGRNRVQVYS 376


>gi|91200043|emb|CAJ73085.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 774

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 101/230 (43%), Gaps = 19/230 (8%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
            +   I+I    L +IG            ++++L+ I   +S +LG     +  E  IS 
Sbjct: 550 ILVLPIYIEKKLLGFIGFDNVRSTGQWSEDDVTLLNI---MSEILGNAIARVESEKLIS- 605

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
                ++  D L+ L N +     L             ++I+  D+D FK IND+FGH +
Sbjct: 606 ----HMAYHDALTKLPNRNLLYDRLKVAMAHAIRSKNMVAIIMLDLDGFKMINDSFGHQM 661

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQIN 209
           GD ++  ++++L+        + R+GG+EF       ++ ++AA+ A  + +        
Sbjct: 662 GDLLLKAVAERLMQCLREGDTIARMGGDEFIIVIPDLAQTEDAALFAQKILEAFRL--PF 719

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +     +H T S GI     +     ++  +AD ALY++K  G+N    +
Sbjct: 720 LIEKHELHTTASIGITIFPLYANDSESLFKQADVALYLSKAKGKNTYQIY 769


>gi|307321688|ref|ZP_07601078.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Sinorhizobium meliloti AK83]
 gi|306892652|gb|EFN23448.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Sinorhizobium meliloti AK83]
          Length = 772

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 12/181 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIV-FFDIDYFKQIND 144
           E   + +RI  ++  D L+GL N   F   +          ++ +++ F D+D FK IND
Sbjct: 332 ERKRAEDRIGFMAHHDALTGLPNRVLFEEQVAGMLEEIRERDQWAVLAFLDLDDFKLIND 391

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL--ANDLRKI 202
           + GH  GD+++  ++ ++         V R+GG+EF     G  ++   +L    D+R  
Sbjct: 392 SLGHATGDELLKIVAGRMRAAVRRSDSVVRVGGDEFIILLNGLPKERDVVLSRLEDIRTA 451

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           I    + +  G S+ ++ S G+A      +    ++  AD A+Y AK+ GRN +  F++ 
Sbjct: 452 IA-MPVQL-QGRSLQVSCSMGVACFPNQGKTAGELLANADMAMYRAKELGRNNIQVFTEE 509

Query: 262 E 262
            
Sbjct: 510 M 510


>gi|297156967|gb|ADI06679.1| putative integral membrane phosphodiesterase [Streptomyces
           bingchenggensis BCW-1]
          Length = 994

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 17/195 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
            +   + E      ++   +  D L+ L N S F   +          +   +++F D+D
Sbjct: 459 FNSRDVTERVRLQAQLQHSAEHDPLTDLPNRSLFTKQVRHALAGRRRTDAGTAVLFIDLD 518

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAI- 194
            FK +ND  GH  GD+++   + +L     +       RLGG+EFAA  LG  +++ A  
Sbjct: 519 GFKAVNDTVGHQAGDELLVQAARRLQESVRSGSGDCAARLGGDEFAALILGDGDRDPAAR 578

Query: 195 ------LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
                 +A+ LR  +      +  G  + +  S G+A          ++  AD A+Y AK
Sbjct: 579 ECRILEIADRLRARLSQ-PYQVVGGTEVRVAASIGVAFAEPGIGPGELMRNADLAMYRAK 637

Query: 249 KSGRNRVVCFSDIEN 263
            +G+NRV  ++    
Sbjct: 638 SAGKNRVELYAPQMQ 652


>gi|291569908|dbj|BAI92180.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 612

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 10/187 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDY 138
              + E     NR+   +  D L+GL N   F + L    ++          ++F D+D 
Sbjct: 159 QRDVTERQNQQNRLIYEANHDSLTGLYNRGYFRTELQKAIDRTQDSQDYLFGLLFMDLDR 218

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAN 197
           FK IND+FGH  GD+++  + D+L         + R GG+EFA          E + L +
Sbjct: 219 FKLINDSFGHQAGDQLLIEIGDRLQSCIRPQDILSRWGGDEFAILIDDIQDLSEISQLTH 278

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
            +++ I+   +          ++S GIA           ++  AD ALY AK+ G+    
Sbjct: 279 KIQQTIKKPILLGEENLETVTSLSIGIALSSMGYNCSEDMLRDADTALYRAKERGKGSYA 338

Query: 257 CFSDIEN 263
            F+   +
Sbjct: 339 IFTQAMH 345


>gi|170692722|ref|ZP_02883884.1| diguanylate cyclase [Burkholderia graminis C4D1M]
 gi|170142378|gb|EDT10544.1| diguanylate cyclase [Burkholderia graminis C4D1M]
          Length = 607

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 71/272 (26%), Positives = 119/272 (43%), Gaps = 25/272 (9%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLT-PFYGLEYI---LVEN 68
           L   K LE       ++  SI   + + + + +    LF   LT P + L Y    L   
Sbjct: 305 LGLGKPLEDVLSGAHLLGGSIIRMVLVFSALAVLLAILFARALTKPLHILAYAATHLFAE 364

Query: 69  LSLVIISITISLLLGYISG---SILKE-------LFISYNRISQLSRIDCLSGLLNHSAF 118
            ++  + +  +  +G ++     + +E       L +    +  L+  D L+GL N   F
Sbjct: 365 HAMGTLPLKRTDEIGVLARCFDRLRREIRSQMDALHVKQRELVHLATHDVLTGLPNRMLF 424

Query: 119 ISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           +  L           E L+++F D+D FKQIND FGH VGDKV+  ++ +L  V  +   
Sbjct: 425 MEKLERAIQDATRRREGLAVLFVDLDRFKQINDQFGHAVGDKVLVAVALRLKQVLHSADV 484

Query: 172 VGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
           V RLGG+EF     G    EAA  +A+ +   +      +  G  + +  S GI++    
Sbjct: 485 VARLGGDEFIVLIEGPRSAEAAPGIASRIMTTLNEEI--VMDGQGMTVGASIGISQFPDD 542

Query: 231 E-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                 ++  AD A+Y AK  GR   + + D+
Sbjct: 543 SGTAEELLLNADAAMYAAKSGGRCAYLRYHDV 574


>gi|119899002|ref|YP_934215.1| GGDEF/PAS/PAC-domain-containing protein [Azoarcus sp. BH72]
 gi|119671415|emb|CAL95328.1| GGDEF/PAS/PAC-domain containing protein [Azoarcus sp. BH72]
          Length = 1255

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 78/181 (43%), Gaps = 11/181 (6%)

Query: 86   SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
            + S +  +     ++  L+  D L+GL N S     L             +++ + D+D 
Sbjct: 1051 TFSDITFVKRQQEQLEHLAHYDPLTGLPNRSLLADRLQLALAQARREESAVAVCYLDLDG 1110

Query: 139  FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
            FK +ND  GH  GD ++  +  +L         V RLGG+EF    L  + ++E     +
Sbjct: 1111 FKAVNDELGHQAGDLLLVEIGRRLKDCVRAGDTVARLGGDEFVLLLLDVAGQEECIQAVS 1170

Query: 198  DLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
             +   I   +    +G    ++ S GIA     +     ++  ADQA+Y+AK+ G+N   
Sbjct: 1171 RVLAAIA--RPVTIAGEYRSVSASIGIALFPDDDDEPEVLLRHADQAMYLAKQRGKNCYQ 1228

Query: 257  C 257
             
Sbjct: 1229 W 1229


>gi|312884767|ref|ZP_07744468.1| diguanylate cyclase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367680|gb|EFP95231.1| diguanylate cyclase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 325

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 7/184 (3%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDID 137
             +    + + ++    + +L+  D L+ +LN  AF   L           +S +  DID
Sbjct: 124 ALLHEREITQTYMDEKELRRLADTDELTQVLNRRAFTRHLEHAFNDSTTTVVSCLMIDID 183

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK+IND  GH  GD+VI  ++        +  ++GRLGGEEF      ++  +A  +A 
Sbjct: 184 HFKEINDRVGHLSGDEVITQVARICKDNIRSNDYIGRLGGEEFGIMLNRTNAIQAYDVAE 243

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +R+ + +S  +I  G  I  T+S GIAE   H   +  ++  AD+A+Y +K++GRN+V 
Sbjct: 244 RIREAVASSSCHI-DGHIIVPTVSIGIAELTEHVTSVRELMVNADKAMYYSKQTGRNQVT 302

Query: 257 CFSD 260
              D
Sbjct: 303 VHHD 306


>gi|294140132|ref|YP_003556110.1| GGDEF domain-containing protein [Shewanella violacea DSS12]
 gi|293326601|dbj|BAJ01332.1| GGDEF domain protein [Shewanella violacea DSS12]
          Length = 407

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 61/208 (29%), Positives = 105/208 (50%), Gaps = 14/208 (6%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH---- 115
            L  +   N  ++   I   L++  I  +++    +   +   L++ D L+G+ N     
Sbjct: 186 ALTELQRSNERMMNTLIFGGLIILAIFAAVM---AMQKRKYKMLAQHDALTGIFNRGTAQ 242

Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
               ++FI    S  E  S++ FD+D+FK+INDN+GH  GD V+  ++D +     +   
Sbjct: 243 NIAENSFIK-AASKREMFSVIMFDLDFFKRINDNYGHGTGDWVLKKVADMINKASRSDDI 301

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
             R GGEEFA     + E +A  +A + R+IIE+ +   S G S  IT S G+      +
Sbjct: 302 FARFGGEEFALFLPDTDEAKANAMAEEYRRIIESIETKFS-GHSFAITASFGVTSSGEDD 360

Query: 232 -PISTIIYRADQALYVAKKSGRNRVVCF 258
             +  +++RAD A+Y +K+ GRN V  +
Sbjct: 361 LSLDPLLHRADIAMYHSKELGRNCVTAY 388


>gi|158339127|ref|YP_001520304.1| GGDEF family protein [Acaryochloris marina MBIC11017]
 gi|158309368|gb|ABW30985.1| GGDEF family protein [Acaryochloris marina MBIC11017]
          Length = 294

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 63/188 (33%), Positives = 90/188 (47%), Gaps = 21/188 (11%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSI 131
           S  L      IL+E F    R+++L+  D L+ L+N   F++ L  Y          LSI
Sbjct: 109 SEALKRFQEGILQENF----RLTELAYTDSLTELMNRRGFLTQLQQYQSFAARTQRPLSI 164

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  D+DYFK  ND++GH  GD+ +  +S  L          GR GGEEF      S +Q 
Sbjct: 165 LLLDVDYFKTFNDSYGHSAGDQALVLISGILKTNLRRSDLAGRYGGEEFVVCLPDSDQQG 224

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-----ISTIIYRADQALYV 246
           +  +A  LR+ ++N    I       ITIS G+A     +         +I  ADQALY 
Sbjct: 225 SFTVAESLRQAVDNYGWPIQE-----ITISVGVATAIADQDSTYKTAKELINEADQALYY 279

Query: 247 AKKSGRNR 254
           +K+SGRN 
Sbjct: 280 SKQSGRNC 287


>gi|120613350|ref|YP_973028.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
 gi|120591814|gb|ABM35254.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
          Length = 428

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 6/173 (3%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIND 144
           L++L    ++  + +  D L+GL N    +  L         + +++   DID+FK +ND
Sbjct: 166 LRDLRQERDKAMKSALSDELTGLSNRRYAMDFLQQKLGPNKAQAMAVAVIDIDHFKAVND 225

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD V+   + +L    G    V R+GGEEF     G+    A  +   L   ++
Sbjct: 226 RFGHAGGDLVLRDFAARLAETAGRDDVVARIGGEEFLLVLQGARTVGADSVLRQLGDSLD 285

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +   +   P    + SAG+A     E +  ++ RAD+ALY AK++GRNRVV 
Sbjct: 286 TAS-PLPEAPEFRYSCSAGVALARPGETVGEVLRRADEALYQAKRAGRNRVVV 337


>gi|83644925|ref|YP_433360.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83632968|gb|ABC28935.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 528

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 107/248 (43%), Gaps = 19/248 (7%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYIL--------VENLSLVIISITISLLLGYI 85
           + S  +  V+ I    +  + L P   LE  +        +E L L  +       LG  
Sbjct: 266 YASYLLTAVLGIFAFLVLMLVLRPLARLEAYVRRVQSQPQLEKLDLPKLPRDEIGKLGRA 325

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDY 138
              +L +L     ++ ++S  D L+GL N  A I  L             ++I+  D+DY
Sbjct: 326 FYQLLCQLQEQSEKLREMSFRDELTGLANRRAVIGYLDERWRLALEQKSDIAIIICDVDY 385

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           FK  ND++GH +GD+V+  ++  L          V R GGEEF     G+       +A 
Sbjct: 386 FKDFNDHYGHDMGDEVLKEVASALRRGANKRLDLVARYGGEEFLIVLPGADLHIGEQVAE 445

Query: 198 DLRKII-ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            L K + E    +  S  + ++++S G+A       E     I  AD+ALY AK+SGRNR
Sbjct: 446 RLVKRVYEMKLPHHFSQIAQYVSVSCGVAAGSPGEDETKEEWIRLADEALYKAKESGRNR 505

Query: 255 VVCFSDIE 262
               +  +
Sbjct: 506 FAAINPAD 513


>gi|329896030|ref|ZP_08271266.1| sensory box/GGDEF family protein [gamma proteobacterium IMCC3088]
 gi|328921990|gb|EGG29354.1| sensory box/GGDEF family protein [gamma proteobacterium IMCC3088]
          Length = 594

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 89/210 (42%), Gaps = 31/210 (14%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           S   ++ L    +R+  L+  D L+ L N  +F   L          +  ++++F D+D+
Sbjct: 129 SSQHVQALKRQEDRLRYLAYYDPLTSLPNRRSFTEELDRLVLTHHNKDAHVAVMFIDLDH 188

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVV--------------------FGTPMFVGRLGGE 178
           FK+IND+ GH  GD+++  ++ +L                           + + RLGG+
Sbjct: 189 FKRINDSIGHARGDRLLVEIAKRLTDQLSDYGDINILSDVGDYQYLGTEESIIIARLGGD 248

Query: 179 EFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTI 236
           EF         +++   +A  +   +    + + S   + +T S GIA          T+
Sbjct: 249 EFTVVIPNVEDDEKVTDIAKRILHSLSQ-PVELQSHNPV-VTPSIGIALFPKDGTDPDTL 306

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           +  AD A+Y AK  GR+    + D  N++ 
Sbjct: 307 VRNADTAMYAAKSMGRSCYRFYKDDMNSSA 336


>gi|320332688|ref|YP_004169399.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
 gi|319753977|gb|ADV65734.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
          Length = 370

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 106/241 (43%), Gaps = 14/241 (5%)

Query: 23  SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLE-------YILVENLSLVIIS 75
           +P    +  S    I +    ++A +   +  L  F   E       Y      +L ++S
Sbjct: 123 APRGTWLNLSATPGISLTRTPWVALVLFAWATLPLFVAFEVADQPFAYAFAAYAALTVLS 182

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFD 135
             I L+LG ++G    +     +R+  L+  D L+G  N   F       +E   ++  D
Sbjct: 183 -AIGLILGQLAGQTRLKALAQAHRLRSLAFTDALTGAYNRRQFELDFPRADE-ACLLLLD 240

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D+FK++ND  GH VGD+V+      L         V RLGGEEF          +A  +
Sbjct: 241 LDHFKRVNDTHGHDVGDRVLQAFVTILREATRPGDDVYRLGGEEFVVLLRDCPPTKAVSV 300

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A  +R  +E+S    ++ P   +T+S G+            + RAD+ LY AK +GRNRV
Sbjct: 301 AERIRAHVESSLALYAALPGPALTMSGGLVPVG-----EQALRRADELLYQAKANGRNRV 355

Query: 256 V 256
           +
Sbjct: 356 M 356


>gi|160873438|ref|YP_001552754.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160858960|gb|ABX47494.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|315265667|gb|ADT92520.1| diguanylate cyclase [Shewanella baltica OS678]
          Length = 340

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 10/180 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL  +  ++  LS  D L+ + N   F   L          N  L+++  DID+FKQ ND
Sbjct: 161 ELAEANRQLEILSNTDGLTNIGNRRLFDMMLQTEWSRGQRSNSSLALIMLDIDHFKQFND 220

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           ++GH  GD  +  L+  L          V R GGEEF        +Q     A  + ++I
Sbjct: 221 HYGHLAGDDCLKQLASTLSQSGRRAGELVARYGGEEFVILLPNIDKQTVLDTAQHIHQLI 280

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +   I  +      +T+SAG+A  +  +++    ++ +AD ALY AK +GRN +   ++ 
Sbjct: 281 QAIAIPHADTDLGIVTVSAGVAYLQPSNQQSHLELVRQADAALYRAKSAGRNCIRVMNEE 340


>gi|119944951|ref|YP_942631.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Psychromonas ingrahamii 37]
 gi|119863555|gb|ABM03032.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
          Length = 1014

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 11/186 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + E   S   I + +  D L+GL N   F   L             + ++F D+D FK
Sbjct: 567 SDITERKKSEKIIWKQANFDNLTGLSNRQMFHDQLLHEKNKAQRRGLNVGLLFLDLDRFK 626

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            +ND  GH +GD+++  ++ +L         V R GG+EF     G  + Q    +A  +
Sbjct: 627 AVNDTLGHNMGDQLLIDVAQRLRNCVRKRDLVSRFGGDEFTVIIGGLKNTQSVERVAQKI 686

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             + E ++  +    +++IT S GI       E    ++  ADQA+Y AK+ GRN    F
Sbjct: 687 --LCELAEPFLLGEQNVYITPSIGITFYPKDGEATEMLLKNADQAMYSAKEKGRNCYHYF 744

Query: 259 SDIENN 264
           ++    
Sbjct: 745 TNSMQE 750


>gi|91776974|ref|YP_546730.1| diguanylate cyclase [Methylobacillus flagellatus KT]
 gi|91710961|gb|ABE50889.1| diguanylate cyclase (GGDEF domain) [Methylobacillus flagellatus KT]
          Length = 599

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 8/183 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           S  +++EL      +++++  D L+G LN      +L         +  +LS+   DID+
Sbjct: 416 SERLVQELTAKLEHVNEVAHEDFLTGTLNRRGMEQALEREFDRARRHATRLSLAMMDIDH 475

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++ND  GH  GDK +  LS  L     +   + R GGEEF      + E EA  +   
Sbjct: 476 FKRLNDRLGHATGDKALVHLSKVLKASLRSTDVLARYGGEEFIIILPDTGEAEAVEIMKR 535

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            ++ +      + +   + IT SAG+AER   EP  +++ RAD+ALY AK++GRN V   
Sbjct: 536 AQRDL-TRNFFMHNNERVLITFSAGVAEREQDEPPESLVPRADRALYHAKQAGRNMVAGA 594

Query: 259 SDI 261
           +DI
Sbjct: 595 ADI 597


>gi|120553272|ref|YP_957623.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120323121|gb|ABM17436.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 318

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 9/161 (5%)

Query: 107 DCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N  AF             ++  L+++  D+D+FK IND  GH  GD+V+  +S
Sbjct: 159 DELTGLHNRRAFFEFGAQLLNQAVRHHTPLTLIMMDLDHFKAINDTHGHDAGDEVLRQVS 218

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L         V R+GGEEFA     +  + A  LA  L  +++   ++   G SI ++
Sbjct: 219 ALLQARIRDCDIVARMGGEEFAVLLPETGLEMARTLAERLLGLLQELTVHH-GGQSISLS 277

Query: 220 ISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            S GI+    ++  +  ++ RAD+A+Y +K  GR+RV   +
Sbjct: 278 ASFGISLLGSRDRRLEDLMCRADEAMYQSKARGRSRVTLAT 318


>gi|218441831|ref|YP_002380160.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7424]
 gi|218174559|gb|ACK73292.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7424]
          Length = 1027

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 19/225 (8%)

Query: 58  FYGLEYILVENLSLVIISITISLL---LGYISGSI-LKE---LFISYNR-ISQLSRIDCL 109
           ++G  +   +N  L   S +IS +    G I+  I +KE      + +R ++  +  D L
Sbjct: 544 WHGEFHNQKKNGELFWESASISPIKNEEGVITHFIAIKEDITRRKAQDRILAYQANYDAL 603

Query: 110 SGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GL N    I  L           ++++++F D+D FK +ND  GH  GD ++  ++++L
Sbjct: 604 TGLPNRFLAIDRLKLAILQAERQEQRVAVMFIDLDRFKNVNDTLGHEYGDLLLKQVAERL 663

Query: 163 VVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                    V RLGG+EF               +A  +   +E    N+       I+ S
Sbjct: 664 KKCLRKSDTVARLGGDEFLIIIPNLKQPSHCKGIAKKILSSLEK-PFNLLE-EEAFISAS 721

Query: 222 AGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            GI       + ++ ++  AD A+Y+ K+ GRN    ++   N T
Sbjct: 722 IGITLYPDDGDDVNALMRNADTAMYLGKRGGRNDFKFYTLGMNET 766


>gi|188586587|ref|YP_001918132.1| response regulator receiver modulated diguanylate cyclase
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351274|gb|ACB85544.1| response regulator receiver modulated diguanylate cyclase
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 340

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 20/188 (10%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQI 142
           LK L  +  +  +L+ ID L+ L N   F                 LSI+  DIDYFK  
Sbjct: 150 LKLLEETNKKFEKLATIDELTQLANRRLFDETMRGEWRRANRNGYNLSIILLDIDYFKNF 209

Query: 143 NDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD+ +  ++ +L  ++     F  R GGEEFA     +  + A  +A  +R+
Sbjct: 210 NDAYGHQAGDECLKAIAKKLKFLMMRPGDFAARYGGEEFAVILPETDLRGAHSVAEKIRQ 269

Query: 202 IIENSQINISSGP-SIHITISAGIAERC-----------HKEPISTIIYRADQALYVAKK 249
            IE  +I       + ++T+S G+A                + I  +I  AD+ALY AK 
Sbjct: 270 GIEELKIPHCDSKVAQYVTVSLGVASADLKNCQGGRDQATDDEIKILIEHADEALYKAKD 329

Query: 250 SGRNRVVC 257
           +GRN +  
Sbjct: 330 NGRNTIAL 337


>gi|83645551|ref|YP_433986.1| GGDEF domain-containing protein [Hahella chejuensis KCTC 2396]
 gi|83633594|gb|ABC29561.1| FOG: GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 673

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 11/186 (5%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFD 135
           G +  ++L     +  +    +  D L+GL N     + L            KL++++ D
Sbjct: 473 GPVGAALLISEMTAQRQAEYFATHDSLTGLANRRFLTAYLFQELAMARRRKRKLALLYLD 532

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAI 194
           +D FK +ND +GH  GD ++  ++ +L  V      + RLGG+EF        +   +A 
Sbjct: 533 MDRFKAVNDTYGHDAGDALLREVAFRLKNVCRESDLISRLGGDEFVIVALDHKNLNNSAR 592

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRN 253
           LA  +  +I  S+  I  G  IH + S GIA          T++  AD+A+Y AKKSG  
Sbjct: 593 LAKSV--VISLSRPYILGGAHIHTSPSIGIAVYPDDADDETTLLRYADEAMYEAKKSGPG 650

Query: 254 RVVCFS 259
           +   +S
Sbjct: 651 QYRYYS 656


>gi|158318760|ref|YP_001511268.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EAN1pec]
 gi|158114165|gb|ABW16362.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EAN1pec]
          Length = 1327

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 9/175 (5%)

Query: 93   LFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNF 146
                   ++  +  D L+GL N +AF   L             +++F D+D FK +ND F
Sbjct: 1153 RRQMQAELAYRASHDPLTGLPNRAAFDRHLAAVAEHEQAGTSFAVLFIDLDNFKPVNDRF 1212

Query: 147  GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
            GH VGD V+  +  ++         V RLGG+EFA     + +     ++  + +   + 
Sbjct: 1213 GHAVGDDVLRVIGARIGAASRKTDMVSRLGGDEFAVLVDEADDDLVCAISARILET--SR 1270

Query: 207  QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            Q    +G +I +  + GIA      +   T +  AD A+Y AK++GR+R   F+D
Sbjct: 1271 QPIALAGTTIALGATIGIALCRAGIDDPETALRNADNAMYRAKRAGRDRYALFTD 1325



 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 8/172 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNF 146
           E     +R+   +R D L+GL N S F   L S          ++++ D+D FK IND+ 
Sbjct: 453 ERKKLQDRLGHQARHDLLTGLANRSGFGDRLASALAVSSESSCAVLYLDLDGFKPINDSL 512

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+V+A +  +L  +        RLGG+EFA     S    A+++A+ + + +   
Sbjct: 513 GHAAGDRVLAIIGARLAALLREGDLASRLGGDEFAMLLRDSDLATASLVADRVIRAVAEK 572

Query: 207 QINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
            I    G  + +  S GIA           +I+ AD A+Y AK+ G +R   
Sbjct: 573 II--LEGECVQVGASVGIAMGRPGRSRADELIHAADTAMYAAKRDGGSRAAI 622


>gi|253996588|ref|YP_003048652.1| diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
 gi|253983267|gb|ACT48125.1| diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
          Length = 447

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 84/192 (43%), Gaps = 16/192 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + +     +   I  L+  D L+ L N   F   L            K +++F D+D FK
Sbjct: 2   ADITSNKAAAKEIEVLAFYDPLTLLPNRRLFTDRLNHALASSARSQNKGALLFIDLDNFK 61

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ--EAA----I 194
            +ND+ GH VGD ++  ++++L         V RLGG+EF       S Q  EAA    +
Sbjct: 62  NLNDSLGHAVGDMLLLQVAERLNNCVREGDTVARLGGDEFVVTLEDLSLQLDEAASKTKL 121

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253
           +   +   +  SQ     G    IT S G+A   H E     ++ +AD A+Y AKK GRN
Sbjct: 122 IGEKILHQV--SQPYNLGGHEHQITCSIGVALFHHHEQSQDELLKQADIAMYQAKKVGRN 179

Query: 254 RVVCFSDIENNT 265
            +  F      +
Sbjct: 180 AICFFDPGMQTS 191


>gi|58418760|gb|AAW70775.1| PleD-like response regulator containing 2 CheY-like receiver
           domains and a GGDEF domain [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 448

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 59/193 (30%), Positives = 97/193 (50%), Gaps = 15/193 (7%)

Query: 79  SLLLGYISGSILKELFISYNRI-----SQLSRIDCLSGLLNHSAFISSLG-------SYN 126
           S L+  ++  + ++ +    R+     +++S  D L+   N   F + L          N
Sbjct: 254 SELIARVNLQVKRKRYQDALRMNLFNNAEMSIKDPLTNCYNRRYFDTHLRNIIKDSVEKN 313

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
            +LS++  DIDYFK +ND+FGH  GD+++  +  ++         + R GGEEF      
Sbjct: 314 RRLSLMILDIDYFKIVNDDFGHSAGDELLKQIQKRISENIRVTDLLARFGGEEFVVVMPD 373

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHK--EPISTIIYRADQA 243
           ++  +A I+A  +R+II      +S   + H +T+S G+ E      + I   I RAD+ 
Sbjct: 374 TNISDAYIVAERIREIIATEPFILSDKNTTHNVTVSIGVVEMQESDLDNIEKFIVRADRY 433

Query: 244 LYVAKKSGRNRVV 256
           LY AK SGRNRVV
Sbjct: 434 LYKAKNSGRNRVV 446


>gi|332994026|gb|AEF04081.1| signal transduction protein [Alteromonas sp. SN2]
          Length = 1045

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 14/189 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           S + E      ++  ++  D L+ L N S     L     +       +++   D+D FK
Sbjct: 586 SDISEAKEQQYKLEHMAHYDVLTNLPNRSLLAERLDRALSQCKSDKGFVAVALLDLDGFK 645

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG--SSEQEAAILAND 198
           +INDNFGH VGD+++  L+ +L         + R GG+EF          +   AI+ N 
Sbjct: 646 EINDNFGHSVGDELLVILAHRLKGTLRETDTISRFGGDEFVTVLANLKQPQDFVAIIKNM 705

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           LR  + +  + I     + ++ S G+            +I  ADQA+Y+AK+ G+N    
Sbjct: 706 LR--VASEPVKIGESQ-LKVSASIGVTLYPADNTDADQLIRHADQAMYLAKQKGKNCYHL 762

Query: 258 FSDIENNTC 266
           F DIE+   
Sbjct: 763 F-DIESEDA 770


>gi|302343784|ref|YP_003808313.1| diguanylate cyclase [Desulfarculus baarsii DSM 2075]
 gi|301640397|gb|ADK85719.1| diguanylate cyclase [Desulfarculus baarsii DSM 2075]
          Length = 355

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 82/175 (46%), Gaps = 9/175 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           L++   S +R+  ++  D L+ L N  A+ S L         +    S++  DID FK I
Sbjct: 169 LEKAVQSLDRLETMALTDELTKLANRRAWDSRLRVEFNRFLRFGRPCSVIMLDIDDFKAI 228

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH VGD+ +  ++           F+ R GGEEF      +S   A +LA  LR  
Sbjct: 229 NDRFGHLVGDQALIQVARLCQQGLRAVDFLARFGGEEFVCLLPETSLDGAYVLAERLRAS 288

Query: 203 IENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +       ++G    +T S G++  R   E    ++ RAD+ +Y AK  G+N V 
Sbjct: 289 LAAWAFT-AAGQRARLTASFGVSCFRPDDERPEQVVERADKNMYRAKALGKNLVC 342


>gi|226939565|ref|YP_002794638.1| hypothetical protein LHK_00636 [Laribacter hongkongensis HLHK9]
 gi|226714491|gb|ACO73629.1| Predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Laribacter hongkongensis
           HLHK9]
          Length = 759

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 9/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQI 142
           + +     + +R+  L+  D L+ LLN  A    L         +  +++F D+D FK I
Sbjct: 310 TDISRRKAAEDRLVFLASHDPLTRLLNRDALFRKLEDICLSGIEQSFAVLFIDLDRFKLI 369

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRK 201
           ND+FGH  GD ++  ++ +L  V G+   + R GG+EF      + ++ A I +AN L  
Sbjct: 370 NDSFGHATGDNLLRIVAARLSFVVGSNALLARQGGDEFTLLLEDTGQRTAVIDMANRLLD 429

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             E SQ        +HIT S GIA    H +  +T++  AD ALY AK +G+N    F+
Sbjct: 430 --ELSQPITLENQELHITASIGIALAPEHGKDAATLLRHADTALYRAKDAGKNTFAFFT 486


>gi|170679992|ref|YP_001743770.1| diguanylate cyclase [Escherichia coli SMS-3-5]
 gi|170517710|gb|ACB15888.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           SMS-3-5]
          Length = 349

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 68/276 (24%), Positives = 119/276 (43%), Gaps = 34/276 (12%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGL-------------TP 57
           + L     L S+  + F+ Y+++ F+  +  ++ ++ +   Y                TP
Sbjct: 75  VLLVALSLLWSWCSYHFIAYWTLQFAYPLCVLLMLSGVIALYFHTPSLLAFVIPLWFTTP 134

Query: 58  FYGLEYILVENLSLVIISITISLLL-------------GYISGSILKELFISYNRISQLS 104
              L      N+   ++    SL L              ++  S   +L    NR+  L+
Sbjct: 135 IASLMLNQQINIHFAVVWCIFSLALYGGRLILLRWFEEAWVQNSYNNQLI---NRLDALA 191

Query: 105 RIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
             D L+G+ N  A  S L          +++  D+D+FK+ ND +GHP GD+ +  ++D 
Sbjct: 192 HRDPLTGIANRRAMNSILHDAIDNGGSFALIMLDVDFFKRYNDTYGHPAGDRCLIQVADA 251

Query: 162 LVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHIT 219
           L      +   V R GGEEF      ++  EA  +A  +++ ++ + I   +   +  +T
Sbjct: 252 LQRSTRQSEDVVVRYGGEEFVIILFNATLPEAETVAARVKQELKLAAIPHQASAVNAFVT 311

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S GI      +    II  AD ALY AK+SGRNR 
Sbjct: 312 VSQGITCSAPAKTAEQIISDADAALYRAKESGRNRW 347


>gi|24215629|ref|NP_713110.1| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
 gi|45657012|ref|YP_001098.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24196786|gb|AAN50128.1| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
 gi|45600249|gb|AAS69735.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 308

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 76/215 (35%), Positives = 106/215 (49%), Gaps = 26/215 (12%)

Query: 60  GLEYILVENLS-LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           GL Y+   ++S L+  +  ISLL          EL  + +++ + +  D L+ L N  AF
Sbjct: 106 GLIYVTGRDISDLIESNRKISLLAA--------ELKDANDKLFEQACTDPLTKLKNRRAF 157

Query: 119 ISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L S  +        LS++  D+D+FK  ND FGHP GDKV+A L+  L         
Sbjct: 158 NEELNSLIQLSQKQLSPLSLLMIDVDFFKDYNDKFGHPAGDKVLAILASLLAKTLRKDDV 217

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC--- 228
             R GGEEF  A   +SE+EA  +A  L K+IE S+    S     +TIS GI       
Sbjct: 218 TARYGGEEFIVALPNTSEKEAIEIAERLVKVIEESRWEKRS-----VTISVGITTSQINP 272

Query: 229 --HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             + +    II  AD+ALY +K +GRNRV   S I
Sbjct: 273 SNNADHSIDIIEEADRALYHSKVNGRNRVTHSSQI 307


>gi|51245978|ref|YP_065862.1| hypothetical protein DP2126 [Desulfotalea psychrophila LSv54]
 gi|50877015|emb|CAG36855.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 652

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQINDN 145
             S  ++ +L+  D L+GL N S       +  E+        LS+V  DIDYFK+IND 
Sbjct: 480 RQSREKLQRLATTDSLTGLCNRSQLFEIAEAELERQRHSSEHNLSLVMLDIDYFKKINDA 539

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD V+   +D             R+GGEEF     G+  + A  +A   R ++E 
Sbjct: 540 HGHAAGDLVLKAFADIGRKYLRDVDVFARIGGEEFIILLPGTDIKVALKIAERFRALVEK 599

Query: 206 SQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
           + + ++    I  T+S G+      ++    +++ AD ALYVAK+ GRNRV
Sbjct: 600 NPVMVNE-KEIAFTVSFGVTAWNGIEQTFEEVLHEADSALYVAKEKGRNRV 649


>gi|13488377|ref|NP_109384.1| regulatory components of sensory transduction system [Mesorhizobium
           loti MAFF303099]
 gi|14028131|dbj|BAB54723.1| regulatory components of sensory transduction system [Mesorhizobium
           loti MAFF303099]
          Length = 354

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 13/177 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L+RID L+GL N   F   L             LS++  D D FK+ N
Sbjct: 176 RQLISANLELERLTRIDGLTGLGNRRYFDEYLAAEWKRAFRAQSPLSLLMIDADNFKRYN 235

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+V+  ++  +      +     R GGEEF    + +  +E++ +A  L + 
Sbjct: 236 DTYGHMAGDEVLKQIARVIHSGSGRSTDLAARYGGEEFVIVLVDTLLEESSAIAEQLVQG 295

Query: 203 IENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   ++NI  GP   +TIS G+A       E  +  +  AD AL+ AK  GRNRV  
Sbjct: 296 VR--ELNIPHGPD-RVTISVGVATTVPNENETPNDFVNAADLALFRAKSEGRNRVAL 349


>gi|117926223|ref|YP_866840.1| response regulator receiver modulated diguanylate cyclase
           [Magnetococcus sp. MC-1]
 gi|117609979|gb|ABK45434.1| response regulator receiver modulated diguanylate cyclase
           [Magnetococcus sp. MC-1]
          Length = 438

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 80/170 (47%), Gaps = 11/170 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDN 145
           +    N + +    D L+G  N S               Y   +SI+  DID+FK++ND 
Sbjct: 262 IQRKINDLEKKVYHDPLTGAANRSRLYEKFHEEMKRSERYGSPVSILMLDIDHFKRVNDT 321

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD+V+  +  ++         VGR GGEEF   A  +    A  +A ++R++I  
Sbjct: 322 YGHNAGDEVLLEVVKRMQGHVRVTDLVGRWGGEEFLLIAPETVLGAALEVAENIRRLIGQ 381

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                  G    +T S G+ +    E ++T + R D ALY AKK GR+RV
Sbjct: 382 IPF----GQVGRVTCSIGVGQLAKGESMNTCLERVDAALYRAKKQGRDRV 427


>gi|300939121|ref|ZP_07153809.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
 gi|300455962|gb|EFK19455.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
          Length = 350

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 68/276 (24%), Positives = 119/276 (43%), Gaps = 34/276 (12%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGL-------------TP 57
           + L     L S+  + F+ Y+++ F+  +  ++ ++ +   Y                TP
Sbjct: 76  VLLVALSLLWSWCSYHFIAYWTLQFAYPLCVLLMLSGVIALYFHTPSLLAFVIPLWFTTP 135

Query: 58  FYGLEYILVENLSLVIISITISLLL-------------GYISGSILKELFISYNRISQLS 104
              L      N+   ++    SL L              ++  S   +L    NR+  L+
Sbjct: 136 IASLMLNQQINIHFAVVWCIFSLALYGGRLILLRWFEEAWVQNSYNNQLI---NRLDALA 192

Query: 105 RIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
             D L+G+ N  A  S L          +++  D+D+FK+ ND +GHP GD+ +  ++D 
Sbjct: 193 HRDPLTGIANRRAMNSILHDAIDNGGSFALIMLDVDFFKRYNDTYGHPAGDRCLIQVADA 252

Query: 162 LVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHIT 219
           L      +   V R GGEEF      ++  EA  +A  +++ ++ + I   +   +  +T
Sbjct: 253 LQRSTRQSEDVVVRYGGEEFVIILFNATLPEAETVAARVKQELKLAAIPHQASAVNAFVT 312

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S GI      +    II  AD ALY AK+SGRNR 
Sbjct: 313 VSQGITCSAPAKTAEQIISDADAALYRAKESGRNRW 348


>gi|256015020|ref|YP_003105029.1| GAF/GGDEF domain protein [Brucella microti CCM 4915]
 gi|255997680|gb|ACU49367.1| GAF/GGDEF domain protein [Brucella microti CCM 4915]
          Length = 391

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS--- 130
           L++G I+     I  +   +  R++  +  D L+ L N       ++   S  + LS   
Sbjct: 197 LMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGKLLTQKKSARDGLSRDG 256

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSS 188
            ++  D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF      G+S
Sbjct: 257 FLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTS 316

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++  I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK
Sbjct: 317 KEQTDIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAK 375

Query: 249 KSGRNRVVCFSD 260
             G+NR   F +
Sbjct: 376 SKGKNRFEYFEE 387


>gi|251771318|gb|EES51899.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Leptospirillum ferrodiazotrophum]
          Length = 1992

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 13/179 (7%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
              + ++     R    +  D L+GL N  A  ++L             L+I   D+D FK
Sbjct: 1103 RDITDIIDLTKRFEHEALHDSLTGLPNRRALDATLERTLARADRTKTPLAIAILDLDDFK 1162

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
             +ND +GHP GD ++  ++ +         F+ R+GG+EFA     +S    E +    A
Sbjct: 1163 PVNDTWGHPAGDALLREIAARFSASLRGGDFLARIGGDEFALILDLTSDLALEDQVVAFA 1222

Query: 197  NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
              + + +E S   +  G S  + +S G+A      E    ++ +ADQALY AK   R R
Sbjct: 1223 ARIHRAVE-SPFEVEPGQSATVGMSMGVAFFPRDGETPDALLRQADQALYQAKSHKRTR 1280


>gi|224368679|ref|YP_002602841.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223691395|gb|ACN14678.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 629

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 58/228 (25%), Positives = 107/228 (46%), Gaps = 24/228 (10%)

Query: 58  FYGLEYILVENLSLVIISITI-SLLLGYISGSILKELFISYN---RISQLSRIDCLSGLL 113
           +  +  +L E  SL+I+     ++ +  ++ ++ ++  ++     R++QL+  D L+GL 
Sbjct: 126 WQEIRRVLGETDSLLILKKPFDNVEVLQLAHALTRKWELNNEIQGRLNQLAFYDSLTGLP 185

Query: 114 NHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N + FI +L         Y  K ++++ D+D FK+IND  GH +GD ++   S +L+   
Sbjct: 186 NRTLFIENLTTTLDKAHRYKHKAALLYIDLDNFKRINDTLGHSIGDDLLKATSKRLLKCL 245

Query: 167 GTPM---------FVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSI 216
            T            V RLGG+EF       +  E A ++A  + K +   +        +
Sbjct: 246 RTSDTVSRSPAGEMVARLGGDEFTVILPEVTRAEHAGVVALRIAKQLA--EPLHLGNHQV 303

Query: 217 HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            +T S GI+      E I T++  AD A+Y +K+ G N    +    N
Sbjct: 304 IVTPSIGISLFPQDGEDIETLLKNADIAMYFSKRMGPNMFSFYEQSMN 351


>gi|213969908|ref|ZP_03398041.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
 gi|213925233|gb|EEB58795.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
          Length = 553

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 89/205 (43%), Gaps = 20/205 (9%)

Query: 81  LLGYISGSILKE---------LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124
           L+ +I   I  E         L      +  ++  D L+GL N   F             
Sbjct: 326 LIKHIHSRIRAEDQLLESQAALIQLNQHLEFIALEDKLTGLANRRRFDQFLDVEFKRARR 385

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAA 183
               LS++  D D+FK+ ND+FGH  GD+ +  L+  +      P     R GGEE A  
Sbjct: 386 ERNMLSLILMDADHFKRYNDHFGHLAGDECLVALARLVEQCIRRPGDVAARYGGEEIAVV 445

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRA 240
             G+ E  A  +A ++ + I + QI   + P   +T+S G+A             +I  A
Sbjct: 446 LPGTDEASARQVAENILQAIRDEQITHPASPFGIVTVSLGVATVVGSNRQISQRGLIELA 505

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D+ALY AK  GRNRV   S+I  NT
Sbjct: 506 DRALYAAKSQGRNRVNVASEIAFNT 530


>gi|117926802|ref|YP_867419.1| response regulator receiver modulated diguanylate cyclase
           [Magnetococcus sp. MC-1]
 gi|117610558|gb|ABK46013.1| response regulator receiver modulated diguanylate cyclase
           [Magnetococcus sp. MC-1]
          Length = 310

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 92/177 (51%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           +L    + + QL+ +D L+G+ N   F   +         Y    S++  DIDYFK+ ND
Sbjct: 132 DLKRHGDMLKQLAIMDGLTGIANRRRFDQFVDYEWSRSLRYQHNFSLIMLDIDYFKRFND 191

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD+ +  ++  +      P     R GGEEFA     +S + A  +AN + + +
Sbjct: 192 CYGHAQGDQCLKQVAYAISQAMPRPMDLAARYGGEEFACVLPETSREGAVTVANRVLQGV 251

Query: 204 ENSQI-NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  +I +  S  + H+T+S GIA      ++  +T++ RADQALY AK SGRN++  
Sbjct: 252 QELRIAHAHSNVANHVTVSVGIASMVPRSEDIPTTLLARADQALYHAKNSGRNQLHY 308


>gi|254492410|ref|ZP_05105582.1| GGDEF domain protein [Methylophaga thiooxidans DMS010]
 gi|224462302|gb|EEF78579.1| GGDEF domain protein [Methylophaga thiooxydans DMS010]
          Length = 336

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 8/164 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+ + N  AFI                + ++  DID FKQIND FGH VGD
Sbjct: 169 LEYLANTDELTDIWNRRAFIAESEKELQRAVRNEHPVCLLMLDIDDFKQINDQFGHEVGD 228

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+      ++ +  +    GR+GGEEFA     + + EA  LA  +R+ + N     + 
Sbjct: 229 EVLKLFCHGIMAIKRSYDIFGRIGGEEFAILLPETKQTEAVELAERIREKVANI-FFHTQ 287

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              + IT+S G+ +    + + + + +AD+ LY AK++G+N+V 
Sbjct: 288 QQKVGITVSIGVCQLTPLDTVLSGLNKADKILYTAKRAGKNQVQ 331


>gi|73537482|ref|YP_297849.1| response regulator receiver modulated diguanylate cyclase
           [Ralstonia eutropha JMP134]
 gi|72120819|gb|AAZ63005.1| response regulator receiver modulated diguanylate cyclase
           [Ralstonia eutropha JMP134]
          Length = 359

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+GL N   F                +L+++  D+D FK  N
Sbjct: 177 QQLLETNLELQRLTNSDGLTGLSNRRYFDEYLNAEWKRAQREQSQLALLMIDVDAFKAYN 236

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+V+  ++  L            R GGEEF+     +S   A + A  +R+ 
Sbjct: 237 DTYGHVAGDEVLRRVAAVLRDNCSRPADLPARFGGEEFSMVLPSTSPGGARLFAEKVRRA 296

Query: 203 IENSQINISSGPSIH-ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IE+  I  S   +   +T+S G A       +P S ++  AD  LY AK++GRN+VV 
Sbjct: 297 IESLGIAHSGADTGGFLTVSIGAAVLVPEDGQPSSRLVEVADAGLYEAKRNGRNQVVM 354


>gi|119899119|ref|YP_934332.1| GGDEF/PAS/PAC-domain-containing protein [Azoarcus sp. BH72]
 gi|119671532|emb|CAL95445.1| GGDEF/PAS/PAC-domain containing protein [Azoarcus sp. BH72]
          Length = 579

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 85/177 (48%), Gaps = 9/177 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
            + E     +++  L+  D L+ L N   F   L          + ++ +V  D+D FK 
Sbjct: 375 DVTEQRRVADQLIALAERDPLTNLYNRRRFHEELERMLAEATRRDLEVGLVAIDLDGFKP 434

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH  GD+V+  +++ +  +        RLGG+EFA     +SE E + LA  L +
Sbjct: 435 INDRFGHQAGDEVLVGVAEGVARIIRRNEMFFRLGGDEFAMLVPDTSEAELSELAARLVE 494

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I+       +G S  +T S GIA    H E    ++  ADQA+Y +K  GRNR + 
Sbjct: 495 AIDALHFTF-AGESAGVTASIGIALFPHHGEGGEALMVAADQAMYRSKSDGRNRWMV 550


>gi|226945987|ref|YP_002801060.1| guanylyl cyclase [Azotobacter vinelandii DJ]
 gi|226720914|gb|ACO80085.1| guanylyl cyclase [Azotobacter vinelandii DJ]
          Length = 415

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 59/264 (22%), Positives = 110/264 (41%), Gaps = 30/264 (11%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFY----IGLTPFYGLEYI 64
             +W        S +P   M+     F     +    A+I L +         +  LE  
Sbjct: 170 WELWRVRASLTVSVAPALGMLVLHGTFYCLRLSFDRGASIGLRWSESGADFMAWMVLEAF 229

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ 118
           L  N             + + + ++++E   +  R   ++  D L+ + N  AF      
Sbjct: 230 LFANG------------IAFATLAMVRER--AEQRYRAVAYRDPLTDIGNRRAFTSGGEV 275

Query: 119 -ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
            ++   +     +++  D+D+FK++ND  GH +GD  +      L +        GR+GG
Sbjct: 276 LLARCAAEGRPAALLLCDLDHFKRLNDTHGHAMGDAALVAFGRLLALGVRQQDICGRIGG 335

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTI 236
           EEFA    G+    +  +A  +R+      +     P + +++S G+A        +S +
Sbjct: 336 EEFACLLPGADRTVSLQVAERIRQACSELSLE----PGVRVSVSIGVASSEQAGYDLSRL 391

Query: 237 IYRADQALYVAKKSGRNRVVCFSD 260
           +  +DQALY AK +GR+RV C +D
Sbjct: 392 LALSDQALYRAKANGRDRVECSAD 415


>gi|308188100|ref|YP_003932231.1| hypothetical protein Pvag_2622 [Pantoea vagans C9-1]
 gi|308058610|gb|ADO10782.1| Uncharacterized signaling protein [Pantoea vagans C9-1]
          Length = 693

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 62/271 (22%), Positives = 117/271 (43%), Gaps = 20/271 (7%)

Query: 10  SIWLC--------HEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL 61
           ++WL         H   +   +     I  +    + +A  +F  +  +   G++     
Sbjct: 157 ALWLAFHLRQGDHHLLLMRGLASIVMGIAIAGMHYVGMAAAVFSHDSTMLPHGVSNPGLA 216

Query: 62  EYILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
            ++ +  LS++ I++  S+L   + +  +   L  +   + QL+  D L+ L N      
Sbjct: 217 VWVSLITLSILGITLLSSMLDAQVRAARLATRLNRANQELRQLAMHDNLTALPNRVMLEQ 276

Query: 121 SLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L           ++ ++++ D+D FK +ND +GH VGD+++  ++++L       M + 
Sbjct: 277 QLDLAIKQATLNEDRFAVIYMDLDGFKAVNDTWGHHVGDRLLVAVAERLRSQLSNTMLLV 336

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           RLGG+EF           A  LA  L K+I            +H+++SAGIA    H   
Sbjct: 337 RLGGDEF-VLMAECDISPARQLAQKLVKVI--GSPFELDRYVLHVSLSAGIAIFPLHGRS 393

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
              +++ AD A+Y  K SGRN    F    +
Sbjct: 394 RQELLFNADAAMYHTKHSGRNGWCLFEPTMS 424


>gi|197295246|ref|YP_002153787.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
 gi|195944725|emb|CAR57329.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315]
          Length = 506

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 11/184 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFD 135
           ++    L++ F     ++ L+R D L+GL N  A  ++L    E+L        S++F D
Sbjct: 312 WLLAFALRDNFRKQTLLTDLTRTDPLTGLHNRRALDTALADEWERLQRGSGGSLSVLFID 371

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
            D+FKQ ND  GH +GD  + FL++ +            R GGEEF A    + E  AA 
Sbjct: 372 ADHFKQYNDRHGHALGDTALRFLAECIRAHTRRRGDLAARYGGEEFVAVLPDTDENGAAR 431

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGR 252
           +A+ +R+ +E ++++  +      T+S G A   R     +  + + AD ALY AK+ GR
Sbjct: 432 VADAIRREVERNRLDGFAETVPPFTVSIGCATSRRARHASVHALTHDADMALYRAKREGR 491

Query: 253 NRVV 256
           NRV 
Sbjct: 492 NRVC 495


>gi|152980124|ref|YP_001353267.1| sensory box protein [Janthinobacterium sp. Marseille]
 gi|151280201|gb|ABR88611.1| sensory box protein [Janthinobacterium sp. Marseille]
          Length = 439

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 90/185 (48%), Gaps = 14/185 (7%)

Query: 81  LLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           LL ++S  I    E      R+  +++ D L+ L N +     L             LS+
Sbjct: 247 LLQFVSTQIATAIERQQMQARLQYMAQYDQLTTLPNRALLYDRLQVALLKARRERGCLSL 306

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQ 190
           +F D+D FK +ND  GH VGD+++  ++ +L         V R+GG+EF          Q
Sbjct: 307 LFLDLDKFKLVNDTLGHHVGDQLLQEVARRLKQCLRESDTVARVGGDEFVILLQLIPLPQ 366

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
           +AA++A  +R+ ++ +  NI     ++I  S GIA    H E  + ++  ADQA+Y  K 
Sbjct: 367 QAALVAEKIRQALQPA-FNI-DKHVLNIVPSIGIAHYPEHGEDEAQLLKHADQAMYQEKH 424

Query: 250 SGRNR 254
           S R+R
Sbjct: 425 S-RDR 428


>gi|237803761|ref|ZP_04591346.1| sensory box protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025741|gb|EGI05797.1| sensory box protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 194

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 9/178 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
              + E     + + +L+  D L+   N   F                 L+ +  DID F
Sbjct: 16  AEDITEKKHLEDELQRLATTDVLTQSSNRRHFFECAQREFELARLNGTPLAFLLLDIDDF 75

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND +GH  GD V+  +++            GR+GGEEFAA   G +   A  +A  L
Sbjct: 76  KLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCAPDMAMQIAERL 135

Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++ I+      S G +  IT S G+       + +  +  RAD A+Y AK+ G+N++V
Sbjct: 136 QREIQRQNFQ-SGGVTFSITASQGLTNLGPEDQSLEALYGRADAAMYQAKRQGKNQIV 192


>gi|146339021|ref|YP_001204069.1| diguanylate cyclase [Bradyrhizobium sp. ORS278]
 gi|146191827|emb|CAL75832.1| Putative diguanylate cyclase (GGDEF) with GAF and HAMP domains
           [Bradyrhizobium sp. ORS278]
          Length = 648

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 81/174 (46%), Gaps = 8/174 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +   S  D L+GL N    +            +   +S+V  D+D+FK  NDN GH  GD
Sbjct: 437 LRDQSVRDVLTGLNNRRYLLETARRELLRAARHKSPVSVVTLDVDHFKTFNDNHGHDAGD 496

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  + + L   F       R GGEEF     G++ +E  + A +LR  IE+ +I  + 
Sbjct: 497 TVLRHVGEILRATFADDGVPCRFGGEEFVVLLPGATTEEGGVRAEELRARIESMKIRYAD 556

Query: 213 GPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                +TISAG+A           I+  AD ALY AK+ GRNRV   +  E + 
Sbjct: 557 SYLPRVTISAGVASYPDAGGSFMDILRVADDALYQAKQKGRNRVEVAASGEMSA 610


>gi|115524865|ref|YP_781776.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
 gi|115518812|gb|ABJ06796.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
          Length = 418

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 68/249 (27%), Positives = 115/249 (46%), Gaps = 22/249 (8%)

Query: 15  HEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVII 74
             K+++   P    I   +     +   I ++++       T   G  +++V  + LV+ 
Sbjct: 140 RRKSMQRRWPA---IIVPLLHGGVLMLPILLSDLLTPPAQTTA--GNVWLMVFAVELVLY 194

Query: 75  SI-TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYN 126
           ++ T+  +   +S   ++    +       + ID L+GL N   F       I    +  
Sbjct: 195 AVGTVFAIFMLVSERTVRAHKTA-------ASIDPLTGLFNRRGFTEATTRMIEREAAAG 247

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             ++++ FDIDYFK IND FGHP GD+++   +  +          GR+GGEEFAA    
Sbjct: 248 RPVTVMIFDIDYFKSINDRFGHPAGDELLKLFATLITSSLRITDLSGRIGGEEFAALLP- 306

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
            S  EA + A  +R   E   I + + P +  T+S G+A    +  +  ++  AD ALY 
Sbjct: 307 CSIDEALVAAERVRWSFETCGIVVDNDP-VATTVSIGVAGGPARTELDVLLAAADTALYQ 365

Query: 247 AKKSGRNRV 255
           AK+ GRNRV
Sbjct: 366 AKRGGRNRV 374


>gi|331682933|ref|ZP_08383541.1| putative GGDEF domain protein [Escherichia coli H299]
 gi|331079754|gb|EGI50944.1| putative GGDEF domain protein [Escherichia coli H299]
          Length = 349

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 69/275 (25%), Positives = 120/275 (43%), Gaps = 28/275 (10%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGL-------------TP 57
           + L     L S+  + F+ Y+++ F+  +  ++ ++ +   Y                TP
Sbjct: 75  VLLVALSLLWSWCSYHFIAYWTLQFAYPLCVLLMLSGVVALYFHTPSLLAFVIPLWFTTP 134

Query: 58  FYGLEYILVENLSLVIISITISLLL---GYISGSILKELFISY-------NRISQLSRID 107
              L      N+   ++    SL L     I     +E ++         NR+  L+  D
Sbjct: 135 IASLMLNQQINIHFAVVWCIFSLALYGGRLILLRWFEEAWVQNSYNNQLINRLDALAHRD 194

Query: 108 CLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
            L+G+ N  A  S L          +++  D+D+FK+ ND +GHP GD+ +  ++D L  
Sbjct: 195 PLTGIANRRAMNSILHDAIDNGGSFALIMLDVDFFKRYNDTYGHPAGDRCLIQVADALQR 254

Query: 165 VFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISA 222
               +   V R GGEEFA     ++  EA  +A  +++ ++ + I   +   +  +T+S 
Sbjct: 255 STRQSEDVVVRYGGEEFAIILFNATLPEAETVAARVKQELKLAAIPHQASAVNAFVTVSQ 314

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           GI      +    II  AD ALY AK+SGRNR   
Sbjct: 315 GITCSAPAKTAEQIISDADAALYRAKESGRNRWAL 349


>gi|229020638|ref|ZP_04177372.1| GGDEF domain protein [Bacillus cereus AH1273]
 gi|229026851|ref|ZP_04183178.1| GGDEF domain protein [Bacillus cereus AH1272]
 gi|228734448|gb|EEL85115.1| GGDEF domain protein [Bacillus cereus AH1272]
 gi|228740662|gb|EEL90926.1| GGDEF domain protein [Bacillus cereus AH1273]
          Length = 343

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 110/236 (46%), Gaps = 12/236 (5%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS 86
             + + +  SIF   + F  N++   I + P Y L   +   +SL ++   ++    ++S
Sbjct: 109 ITLIWRMKISIFAKWIWF--NVYSLSILILPLYILFKDMYV-VSLYLVCCIVAAYFTFVS 165

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
            S + +    +  +   + ID L+ L N   F   +  +       N+ L ++  DID+F
Sbjct: 166 ASYVLQSNELFQTMKHYATIDALTNLGNVRQFDLEMNRHIDNKYMKNDSLCLLLIDIDHF 225

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND +GHP GD+V+  +   L+        V R GGEEFA             +   +
Sbjct: 226 KYVNDTYGHPAGDEVLKQVGRILLENGPFSNLVFRKGGEEFALLIPKKGLAFGTRIGEQI 285

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           R  +E     + +G  I IT+S GI+E   K+     I  AD ALY +K++GRN+V
Sbjct: 286 RLAVEKHSFQLKNGTKIKITVSVGISEY--KKSPEQFIQAADDALYYSKRNGRNQV 339


>gi|188532547|ref|YP_001906344.1| hypothetical protein ETA_03900 [Erwinia tasmaniensis Et1/99]
 gi|188027589|emb|CAO95436.1| Conserved hypothetical protein [Erwinia tasmaniensis Et1/99]
          Length = 522

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 72/211 (34%), Positives = 97/211 (45%), Gaps = 24/211 (11%)

Query: 66  VENLSLVIISITISLLLG--------YISGSILKELFISYNR--------ISQLSRIDCL 109
           +ENL+ +  S T   L G        Y     LK+ F +Y+R        +   +  D L
Sbjct: 307 LENLTRLTSSGTAGRLSGKVDEIETWYREADRLKKAFQAYSRTINKTFSILRDDALTDHL 366

Query: 110 SGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           + L N   F      +       S+   DID+FKQ+ND FGH  GD+V+  +S  L    
Sbjct: 367 TKLHNRRGFDQLTAPFVGGQGSHSLALIDIDHFKQVNDQFGHDTGDEVLVAVSGLLKKGC 426

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
            T   + R GGEEFA     ++  EA  + N +R+ I N Q        IHITISAG+ E
Sbjct: 427 RTQDIICRFGGEEFAILFPDTTLTEAGRVVNRIRENIANVQFPAV----IHITISAGVCE 482

Query: 227 -RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                +     +  ADQ LY AK  GRNRVV
Sbjct: 483 LAQDGDDREKALAVADQLLYRAKHEGRNRVV 513


>gi|88857357|ref|ZP_01132000.1| hypothetical protein PTD2_02316 [Pseudoalteromonas tunicata D2]
 gi|88820554|gb|EAR30366.1| hypothetical protein PTD2_02316 [Pseudoalteromonas tunicata D2]
          Length = 513

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 11/180 (6%)

Query: 88  SILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           S+ KE  I   R+++    S  D L+ L N +AF              N+ L +V  D+D
Sbjct: 333 SLEKETSIYRERLAEQKFKSLQDSLTKLPNRAAFDERFQLEFNSFKRNNKNLCLVVIDVD 392

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK+IND+FGH  GDK +  ++  L        F+ R GGEEF      +  ++      
Sbjct: 393 HFKRINDSFGHSAGDKTLQVIASALKKTVRNTDFIARFGGEEFIIIMPDTDLKQIIQPLE 452

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +RK I+          S+ ITIS G  +    +    +  RAD ALY AK++GR+R+V 
Sbjct: 453 KIRKAIKAIPFKFKD-TSVQITISIGATQFMSVDTTQEVFDRADDALYEAKRTGRDRLVI 511


>gi|325920655|ref|ZP_08182565.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           gardneri ATCC 19865]
 gi|325548845|gb|EGD19789.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           gardneri ATCC 19865]
          Length = 569

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 77/170 (45%), Gaps = 8/170 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNF 146
                 + + S  D L+GL N      SL          +  LS++  D+D+FKQ ND+ 
Sbjct: 389 LRLRESLRRQSIRDALTGLYNRRYLEESLSHELARCARRDLPLSVLMLDVDHFKQFNDSQ 448

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD ++A + + L+          R GGEEF      +   EA  +A  +R  I   
Sbjct: 449 GHAGGDLLLAAVGELLLTRLRAEDVACRYGGEEFTVILPETDGAEAMRVAEQIRGFIAAL 508

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
            +         +T S G+A      E  S++I +AD ALY+AK  GRNRV
Sbjct: 509 AVTDGQRSLPRVTASIGVASFPIDGELGSSLIQKADAALYIAKHRGRNRV 558


>gi|238791809|ref|ZP_04635446.1| hypothetical protein yinte0001_15250 [Yersinia intermedia ATCC
           29909]
 gi|238728913|gb|EEQ20430.1| hypothetical protein yinte0001_15250 [Yersinia intermedia ATCC
           29909]
          Length = 471

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 60/186 (32%), Positives = 87/186 (46%), Gaps = 11/186 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVF 133
           ++ Y S   + EL  S + +  LS+ D L+G+ N   F        +K       LS++ 
Sbjct: 280 VIWYGSFFDITELKQSESILKALSQTDVLTGVANRRHFDDIYQHIWQKNRTEGGALSVLM 339

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEA 192
            D D FK  ND +GH +GD  +  + + L          + R GGEEF      S+ ++A
Sbjct: 340 IDFDNFKSFNDLYGHAMGDVCLKSIVETLSKSIRGGSDILARYGGEEFIVLLAPSTLEDA 399

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPIS--TIIYRADQALYVAKK 249
             +A  +R  IE   I     P   +TIS G+A      E IS   +   AD+ALY AK 
Sbjct: 400 KAVAERMRHSIEELDIPHGMSPGGRVTISIGVASVSAPGESISATDVSVAADKALYRAKT 459

Query: 250 SGRNRV 255
           +GRNRV
Sbjct: 460 AGRNRV 465


>gi|171060216|ref|YP_001792565.1| PAS/PAC sensor-containing diguanylate cyclase [Leptothrix cholodnii
           SP-6]
 gi|170777661|gb|ACB35800.1| diguanylate cyclase with PAS/PAC sensor [Leptothrix cholodnii SP-6]
          Length = 438

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 9/176 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
             + +   +  +  Q +  D L+G+ N  +F                 LS++ FD D+FK
Sbjct: 258 RDISDKREACEQQRQANDCDHLTGIANRRSFFEAAELELMRARQSPRPLSMILFDADHFK 317

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH  GD V+  L+  L   F     V R+GGEEFA     +    A  +AN LR
Sbjct: 318 LINDRHGHHAGDAVLRHLAALLTANFRQVDVVARVGGEEFAVLLPSTGLHGAVRVANRLR 377

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255
           + +E   + +  G  IH T+S G+A        +  ++  ADQALY AK +GRNR+
Sbjct: 378 QAVEAQTVEV-DGVEIHCTVSGGVATMAAGLSGLDALMKCADQALYAAKAAGRNRI 432


>gi|170750741|ref|YP_001757001.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
 gi|170657263|gb|ACB26318.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
          Length = 829

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 82/188 (43%), Gaps = 13/188 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDY 138
           +   + E   +  RI+ ++  D L+GL N   F   LG    + +       ++  D+D 
Sbjct: 380 AAIDMTERRRAEARIAHMAHHDALTGLPNRVLFRDRLGEAIARHARDGEEAVLLCLDLDK 439

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND  GHPVGD ++   ++++         V RLGG+EFA    G        LA+ 
Sbjct: 440 FKIVNDTLGHPVGDALLREAAERIAGCLRKDDLVARLGGDEFAILVRGMDLP---ALADG 496

Query: 199 L--RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           L  R I E  +     G   HI  S G+A          T++  AD ALY AK  G +  
Sbjct: 497 LIARVIAELGRPFRLEGQDCHIGTSIGVACLPRDGTDPETLMKNADLALYRAKAEGGSTF 556

Query: 256 VCFSDIEN 263
            CF    +
Sbjct: 557 RCFEPEMD 564


>gi|158522257|ref|YP_001530127.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfococcus oleovorans Hxd3]
 gi|158511083|gb|ABW68050.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfococcus oleovorans Hxd3]
          Length = 764

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 21/192 (10%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
              + E  ++  +I  L+  D L+ L N + F       I     Y  + +++F D+D F
Sbjct: 306 SRDITERRLAEEKIRYLATHDNLTELPNRTLFGQMLGRAIKFAQRYQRQFAVLFIDLDRF 365

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPM----------FVGRLGGEEFAAAALG-SS 188
           K IND  GH  GD+++  ++ +                    VGRLGG+EF       ++
Sbjct: 366 KIINDTMGHDAGDQLLKEIASRFRQSLRAVDVVGRLNEKDSVVGRLGGDEFVVLIEEVTN 425

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247
             + A +A  +       +  +  G    +T S GI+      E   T++ +AD A+Y A
Sbjct: 426 LSQVATVAQKILNT--AIKPMVLLGEECRVTASIGISVYPDDGEDERTLMKKADMAMYFA 483

Query: 248 KKSGRNRVVCFS 259
           K+ G+N    +S
Sbjct: 484 KEEGKNNFQFYS 495


>gi|304398353|ref|ZP_07380227.1| diguanylate cyclase [Pantoea sp. aB]
 gi|304354219|gb|EFM18592.1| diguanylate cyclase [Pantoea sp. aB]
          Length = 521

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 9/166 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R++  ++ D L+ +LN     + L  Y    +  S++  DID+FK +ND++GH VGD+VI
Sbjct: 359 RLNSEAQTDPLTQVLNRRGLNAVLEYYRTLRQPFSVLALDIDHFKNVNDSWGHDVGDRVI 418

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L         V R GGEEF     G++  EA I+A  +R  I  + +       
Sbjct: 419 QQVASTLRASARQSDVVCRNGGEEFLMLLPGTALDEAQIIAERVRVGIAEAWLTDVG--- 475

Query: 216 IHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFS 259
             IT+S G+A     +   +   + +AD ALY AK +GRN V+   
Sbjct: 476 -RITLSIGVAAWNGSQDAGLENSLKQADAALYEAKSAGRNCVIVAD 520


>gi|209885029|ref|YP_002288886.1| ggdef domain [Oligotropha carboxidovorans OM5]
 gi|209873225|gb|ACI93021.1| ggdef domain [Oligotropha carboxidovorans OM5]
          Length = 414

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 71/253 (28%), Positives = 115/253 (45%), Gaps = 20/253 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL 69
            +W    K + S  P    I+  I     +   I + +I L   G  P+  + ++     
Sbjct: 140 ELWRERRKAMRSRWPA---IFVPILHGAVLMLPIVLGDI-LSPAGTGPYNAI-WVAAFAA 194

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSL 122
            LV  +I       +I   ++ E  ++ ++ +  + ID L+GLLN   F       I   
Sbjct: 195 ELVFYAIGTV----FIIFMLVSERTLAIHKTA--ASIDPLTGLLNRRGFREATTRMIERE 248

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                 ++ + FDID+FK +ND +GH  GD V+   ++  V        +GR+GGEEFAA
Sbjct: 249 AKAGRPITAMIFDIDHFKAVNDTYGHATGDDVLRVFANVAVGALRVTDLLGRVGGEEFAA 308

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
                  +EA + A  +R   E + I +  G  +  T+S G+A       +  ++  AD 
Sbjct: 309 LLP-CGMEEALVAAERVRDAFEQAGIAV-DGAPLATTVSIGVAGGPASTELDVLLASADT 366

Query: 243 ALYVAKKSGRNRV 255
           ALY AK+ GRNRV
Sbjct: 367 ALYRAKRGGRNRV 379


>gi|116623704|ref|YP_825860.1| response regulator receiver modulated diguanylate cyclase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116226866|gb|ABJ85575.1| response regulator receiver modulated diguanylate cyclase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 325

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 60/195 (30%), Positives = 91/195 (46%), Gaps = 9/195 (4%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEK 128
           + + +  G     + +EL  +   + + +  D L+GLLN ++ +  L             
Sbjct: 131 LRVRIRAGRRILDLQEELLKAREALREQATHDGLTGLLNRTSILEKLDDELSRAARDGSS 190

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +S++  D+D FK +ND  GH  GD V+   S +L         VGR GGEEF     G  
Sbjct: 191 VSVLMVDLDRFKSVNDTQGHLAGDAVLREASSRLRSASRRYDSVGRYGGEEFLVVLPGCE 250

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +  A + A  LR+ I  +     S P + +T S G+A   H  P   +I  AD ALY AK
Sbjct: 251 KAAAELQAERLREAIGGTPFRADSRP-LAMTCSIGLACSSHCAP-EDLIREADDALYQAK 308

Query: 249 KSGRNRVVCFSDIEN 263
             GRNRVV  +++  
Sbjct: 309 AGGRNRVVAHTELSM 323


>gi|238798138|ref|ZP_04641625.1| hypothetical protein ymoll0001_18060 [Yersinia mollaretii ATCC
           43969]
 gi|238717992|gb|EEQ09821.1| hypothetical protein ymoll0001_18060 [Yersinia mollaretii ATCC
           43969]
          Length = 572

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 13/177 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           +L  +  R+   +R D L+ L N   F              +  L+I+  DIDYFK  ND
Sbjct: 389 KLIKANRRLEIQARTDSLTKLPNRREFKKVLAHEFMRAKRSDSPLAILMIDIDYFKNFND 448

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  L      +   V R GGEEFAA    + ++ A+++A  + + I
Sbjct: 449 YYGHISGDACLRLVARALRKSLKRSTDIVARYGGEEFAAILPDTDQKGASLVAEHILQSI 508

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-----PISTIIYRADQALYVAKKSGRNRV 255
               I  S      +TIS G+      +       + ++  ADQALY +KK+GRN+ 
Sbjct: 509 RAMGIKHSDSKFRKVTISLGVTVYQAHQHAGITDQADLMLTADQALYYSKKNGRNQF 565


>gi|126667729|ref|ZP_01738697.1| response regulator receiver domain protein (CheY-like)
           [Marinobacter sp. ELB17]
 gi|126627832|gb|EAZ98461.1| response regulator receiver domain protein (CheY-like)
           [Marinobacter sp. ELB17]
          Length = 511

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 73/235 (31%), Positives = 111/235 (47%), Gaps = 30/235 (12%)

Query: 49  FLFYIGLTPFYGLEYIL------------VENLSLVIISI---TISLLLGYISGSILK-- 91
            +  + L P  G  ++L               L L++I      I+LL+ +   S+ +  
Sbjct: 269 LIHEVPLAPIAGRNWVLQAMPGATFVSARRSYLPLLVIGFGFSFIALLVFFAVRSLRQNA 328

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL  +   +  +S  D L+GL N   F + L          ++ +S+V  DIDYFK  ND
Sbjct: 329 ELNKTKRELETISLTDALTGLANRRHFDAYLEQEWSRALRQSQPISMVMLDIDYFKAFND 388

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GHP GD+ +  ++  L  V   P     R GGEEFA     +  Q+AA +A   R  I
Sbjct: 389 AYGHPRGDQCLKQVARALEQVMRRPTDLAARYGGEEFALVLPDT--QDAATVAEACRVAI 446

Query: 204 ENSQI-NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   I +  SG +  ITIS G+       K   + +I +AD ALY AK++GRN+V
Sbjct: 447 QALGIVHEFSGVAPVITISVGVCSLVPTRKMSPAVLIQQADDALYDAKEAGRNQV 501


>gi|153818336|ref|ZP_01971003.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|126511149|gb|EAZ73743.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
          Length = 319

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 68/220 (30%), Positives = 111/220 (50%), Gaps = 21/220 (9%)

Query: 58  FYGLEYILVENLSLVIISITISLLLG----------YISGSI------LKELFISYNRIS 101
           F  LE +  +NLS+  +   I  L+           +++  +      +  L     ++ 
Sbjct: 98  FKDLERVEQDNLSIEEVMTVIRRLVSDSKDIRHSTNFLNNQLNAATLEISRLKEQLAKVQ 157

Query: 102 QLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           + +  D LSGL N  AF     +L    +++S++  DID+FK +NDN+GH  GD++I  +
Sbjct: 158 KDALFDSLSGLYNRRAFDGDMFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAI 217

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217
           + +L  +    +   R GGEEFA  A   S + A   A  +R+ IE   + +  SG S+ 
Sbjct: 218 AKRLQSLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVG 277

Query: 218 -ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            IT S G+ E+   + + ++I RAD  LY AK  GRNRV+
Sbjct: 278 SITASFGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 317


>gi|223039876|ref|ZP_03610160.1| 3-deoxy-d-manno-octulosonic-acid transferase [Campylobacter rectus
           RM3267]
 gi|222878885|gb|EEF13982.1| 3-deoxy-d-manno-octulosonic-acid transferase [Campylobacter rectus
           RM3267]
          Length = 417

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 10/184 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVF 133
           L+  ++ +I  E   + N+I+  +  D L+G+ N   F  ++         + E   +  
Sbjct: 236 LICRVNNTI--EAMENINQIADFANKDFLTGVYNRRYFYENMNEYVAYAEEHMEPYVVAM 293

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK+IND  GH  GDKV+  L+ +L+        + R GGEEF       S ++A 
Sbjct: 294 LDIDHFKKINDTHGHNSGDKVLKTLAKKLIDETKGDDLIARFGGEEFCIILKDISNEDAV 353

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
               +LR  I N ++ +     I  T+S G+A       +  ++  AD+ALY AK++GRN
Sbjct: 354 KFFVNLRANIANCKVQLKK-EQISFTVSIGVAFSRSDYRLDELLELADEALYRAKENGRN 412

Query: 254 RVVC 257
           RV  
Sbjct: 413 RVEI 416


>gi|113968889|ref|YP_732682.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella sp. MR-4]
 gi|113883573|gb|ABI37625.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella sp. MR-4]
          Length = 572

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 11/187 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            S+   L  S+ ++ +L+  D L+ L+N   F       I+     N+ L+++  D+D F
Sbjct: 123 ASMALALRNSHQKLKELAEHDSLTKLMNRYGFELCLNRAIARAKRSNDFLAVILLDLDDF 182

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILAND 198
           K IND  GH  GD ++  ++ +L  V      + RLGG+EF      +  +    I+AN 
Sbjct: 183 KAINDTLGHQTGDILLVKVASRLSSVLRDGDVIARLGGDEFVVLVTDNDYKYFPMIVANR 242

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           L K  E  ++       + I  S G+A         S ++  AD A+Y AKK GRN++  
Sbjct: 243 LLKAFE--EVFGLGDNDVMIGASIGVAFYNEAASNSSELMKCADIAMYRAKKMGRNQIQF 300

Query: 258 FSDIENN 264
           +S+  + 
Sbjct: 301 YSEALDR 307


>gi|332533402|ref|ZP_08409267.1| response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037111|gb|EGI73568.1| response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Pseudoalteromonas haloplanktis ANT/505]
          Length = 266

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 100/246 (40%), Gaps = 14/246 (5%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFLFY---IGLTPFYGLE-YILVENLSLVIISIT 77
           F P        +    ++   +  + I + Y    G   +  +E    + + S+V +   
Sbjct: 22  FYPVVTFASLGVRLGAWLGCTLLFSCIVILYGPDFGQVSYGNVEKTRFIASFSMVFLFSF 81

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS----AFISSLGSYNE---KLS 130
           I     + S   + ++ +      Q +  D L+G+ N       F+    +  E     S
Sbjct: 82  IGEYFRHKSHMAIADITLEQ---KQDAYTDPLTGIANRRFITSHFLKLAQTRPEQYLPFS 138

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           I+  D+D FK +ND  GH  GD V+   +  L   F       R GGEEF       +  
Sbjct: 139 ILLIDLDNFKSLNDTHGHDFGDTVLIEFTKLLESQFLATALKARYGGEEFVVILPQLTAS 198

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
            A ++AN  R+ +    I       I IT S GI++          + +AD+ALY AK +
Sbjct: 199 TATVIANKFREAVAGHVIFTDDKQRISITCSIGISQVNKVTDYDDSLKQADEALYSAKAA 258

Query: 251 GRNRVV 256
           GRNRVV
Sbjct: 259 GRNRVV 264


>gi|302878604|ref|YP_003847168.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
           capsiferriformans ES-2]
 gi|302581393|gb|ADL55404.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
           capsiferriformans ES-2]
          Length = 374

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 81/192 (42%), Gaps = 17/192 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEKL---SIVFFDID 137
           +  + + +   +   I +L+  D L+ L N       L          L   +++F D+D
Sbjct: 168 VVMTDITDRIRNEEEIRKLAFYDALTQLPNRRLLNDRLDQAMAGSRRSLRFGALMFIDLD 227

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA------LGSSEQE 191
            FK +ND +GH  GD ++  ++ ++         V R GG+EF            +S  +
Sbjct: 228 NFKPLNDQYGHDTGDLLLIEVARRITRCLREMDTVARFGGDEFVVLLNELDTGKEASVTQ 287

Query: 192 AAILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVA 247
           A  +A  +R  +      + +       H + S G+    + E     I+  AD A+Y A
Sbjct: 288 ARHIAEKIRYALAEPYKLKSHEKLELEYHCSSSIGVVLFINHETRPDDILKWADMAMYQA 347

Query: 248 KKSGRNRVVCFS 259
           K +GRNRV+ F 
Sbjct: 348 KAAGRNRVIFFE 359


>gi|206970418|ref|ZP_03231371.1| ggdef family protein [Bacillus cereus AH1134]
 gi|206734995|gb|EDZ52164.1| ggdef family protein [Bacillus cereus AH1134]
          Length = 352

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 105/226 (46%), Gaps = 16/226 (7%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96
           +++ T I    I   YI L          +  + L +IS  I+  + +IS + + +    
Sbjct: 132 VWLHTYILSILIPALYIWLIK-------EIHIVGLYLISSIITGYITFISANYVLQSNEL 184

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
           + ++ Q + ID L+GL N   F   +  +       N+   ++  DID+FK +ND +GHP
Sbjct: 185 FQKMKQYATIDALTGLGNVRQFDLEMNRHISNKNMKNDSFCLLLIDIDHFKYVNDTYGHP 244

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+  +   L      P    R GGEEFA            ++   +R  +E+    
Sbjct: 245 AGDEVLKQVGCILRETSQFPDLAFRKGGEEFALLIPNKGLAYGILMGEQIRTAVESHSFQ 304

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +     I IT+S G++E   +E     I  AD ALY +K++GRN+V
Sbjct: 305 LLDETKIKITVSVGVSEY--EESTEQFIQAADDALYYSKRNGRNKV 348


>gi|163941785|ref|YP_001646669.1| diguanylate cyclase [Bacillus weihenstephanensis KBAB4]
 gi|229134854|ref|ZP_04263661.1| Sensory box/GGDEF family protein [Bacillus cereus BDRD-ST196]
 gi|163863982|gb|ABY45041.1| diguanylate cyclase [Bacillus weihenstephanensis KBAB4]
 gi|228648529|gb|EEL04557.1| Sensory box/GGDEF family protein [Bacillus cereus BDRD-ST196]
          Length = 430

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          +EK++++ FDID FK +
Sbjct: 254 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILETEWENVLRNDEKVALILFDIDNFKSV 313

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L+D +           R GGEEF      + E+EA  +A  LR  
Sbjct: 314 NDTYGHDFGDLALVQLADLMKSKVEDQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 373

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE    +  S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 374 IETKHFSGIS----KLTASFGVALYEQGITREELMQRADIALYEAKKNGKNQVCIY 425


>gi|311696963|gb|ADP99836.1| diguanylate cyclase with PAS/PAC sensor [marine bacterium HP15]
          Length = 753

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 77/170 (45%), Gaps = 8/170 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
              + + S  D L+GL N   F              +  LS++  DID+FK+ ND  GH 
Sbjct: 583 REELQKFSYEDGLTGLKNRRYFDQLFEHESAVAQRNDLPLSLLIIDIDHFKKFNDTHGHE 642

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  +  ++  L   F     V R GGEEF     G++ + A   A+ L   + +  I 
Sbjct: 643 AGDNALKIVAGILQKQFRESDLVCRYGGEEFVVVMPGATSEAAMDKASQLSSAVRDVAII 702

Query: 210 ISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCF 258
                   +T+S G+A      E    I+  AD+ALY AK++GRNRV  F
Sbjct: 703 HREKDLGALTVSVGVASWPESGEKPLQILTLADRALYRAKEAGRNRVEVF 752


>gi|315500134|ref|YP_004088937.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Asticcacaulis excentricus CB 48]
 gi|315418146|gb|ADU14786.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Asticcacaulis excentricus CB 48]
          Length = 707

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 91/185 (49%), Gaps = 10/185 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
           G  L E   +  RI+QL+  D L+GL N + +       +S +  +   L++   D+D F
Sbjct: 270 GIDLTEQKAAEARIAQLAHYDPLTGLGNRTLYTHEIEQALSRVQRHGHHLALHCLDLDRF 329

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND+FGH  GD ++  + ++L +      F+ R+GG+EFA        ++A  LA  +
Sbjct: 330 KTVNDSFGHLAGDALLRQVGERLRLCVRKGDFIARMGGDEFAIIQNIERPEDARCLAERV 389

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            +++  S  +I +G  +   +S GIA         + ++ RAD ALY  K  GRN    +
Sbjct: 390 IEVM-KSPFDI-NGIRLEAGVSVGIALAPEDAADANNLLSRADLALYRVKSEGRNGWCFY 447

Query: 259 SDIEN 263
               +
Sbjct: 448 HAEMD 452


>gi|119898419|ref|YP_933632.1| GGDEF-domain-containing protein [Azoarcus sp. BH72]
 gi|119670832|emb|CAL94745.1| GGDEF-domain containing protein [Azoarcus sp. BH72]
          Length = 471

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 106/246 (43%), Gaps = 20/246 (8%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITI 78
           L S   H + +  ++F S F+     +   F      +  +  E ++ +           
Sbjct: 233 LSSAWDHIWWLAHAVFASGFLLLSFGVVRAFHTTRAFSTVFSQEEMMRQ----------- 281

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
             +    + S L  L  +   + +L+  D L+G  N   F+++L             L++
Sbjct: 282 LYVEKERAESALALLRQANADLRRLAATDPLTGASNRRQFMATLASEWARARRERAPLAL 341

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK IND  GHP GD  +         +      +GR+GGEEFA    G+   +
Sbjct: 342 LALDIDHFKHINDRHGHPAGDHALKTFVSAAAGLLRPGDVIGRIGGEEFAIVLPGTQAAD 401

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250
           A  +A  +R  +E   ++I  G  + +T+S G+A           ++  AD+ LY AK +
Sbjct: 402 AHGIAERIRHGVEALALDI-DGVPVALTVSVGVAVSGPSCTEPGDLLKEADRRLYEAKNA 460

Query: 251 GRNRVV 256
           GRNRV 
Sbjct: 461 GRNRVC 466


>gi|51246553|ref|YP_066437.1| hypothetical protein DP2701 [Desulfotalea psychrophila LSv54]
 gi|50877590|emb|CAG37430.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 390

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 61/194 (31%), Positives = 91/194 (46%), Gaps = 25/194 (12%)

Query: 88  SILKELFISYNRIS--------------QLSRIDCLSGLLNHSAF-------ISSLGSYN 126
            + KEL +   ++               +LS  D L+GLLN  A        ++      
Sbjct: 195 QVEKELQLMNKKLRLSQEELEKKNEELCRLSLTDSLTGLLNRRAIEPLAERAMARSRRSG 254

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             +S++ FDIDYFKQ ND +GH  GD+V+A  + ++         + R GGEEF   A  
Sbjct: 255 YSVSLLIFDIDYFKQFNDQYGHVAGDRVLAAAAKEVGNSIRITDSIVRWGGEEFVVLATD 314

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
           +   +A  LAN +R+++         G    IT+S G+A+   K      +  AD+ALY 
Sbjct: 315 TDLVQAVQLANKIRQVVAAISFEDMGG----ITVSVGLAQYNGKGDFRQWLKCADRALYQ 370

Query: 247 AKKSGRNRVVCFSD 260
           AK  GRN  V +SD
Sbjct: 371 AKGRGRNCTVAYSD 384


>gi|322833558|ref|YP_004213585.1| diguanylate cyclase with PAS/PAC sensor [Rahnella sp. Y9602]
 gi|321168759|gb|ADW74458.1| diguanylate cyclase with PAS/PAC sensor [Rahnella sp. Y9602]
          Length = 573

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 82/177 (46%), Gaps = 13/177 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           +L  +  R+   +R D L+ L N   F                 L++V  DIDYFK  ND
Sbjct: 385 KLVKANRRLEIQARTDSLTKLPNRREFKKVLSHEYMRAKRNRTPLTVVMIDIDYFKHFND 444

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           ++GH  GD  +  ++  L      +   V R GGEEFAA    +  + A I+A  + + I
Sbjct: 445 HYGHLSGDACLRLVARTLRKSLKRSTDVVTRFGGEEFAAILPDTDLKGAWIVAQHIMESI 504

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPIS-----TIIYRADQALYVAKKSGRNRV 255
           E   I  S      +TIS GIA     +         I+  AD+ALY++K +GRN++
Sbjct: 505 EVLGIKHSFSEFNRVTISQGIATYMPDQDPDIEDQSDIVSAADEALYLSKNNGRNQI 561


>gi|313202379|ref|YP_004041037.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. MP688]
 gi|312441695|gb|ADQ85801.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. MP688]
          Length = 681

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 11/182 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYF 139
           G  + E +    RI  L+  D L+ L N +  I            +     ++  D+D F
Sbjct: 241 GQDVTETYEYQERIHHLAYFDTLTKLPNRALLIDRVEQTIAEAERHAYPFGLIMLDLDRF 300

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILAND 198
           K+IND  GH +GD ++  ++ +L         V RLGG+EF          +    +A+ 
Sbjct: 301 KEINDTLGHTLGDVLLCEVASRLEKCVRPYDTVARLGGDEFGILVSEMRVPENITRVADK 360

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           + +  +  Q  +  G  + +T S GIA      + +  ++  AD AL+ AK  GRN    
Sbjct: 361 VLQAFD--QPFVVDGHDVFVTASLGIAAYPSDSQAVDDLLKYADSALFHAKHLGRNNFQF 418

Query: 258 FS 259
           +S
Sbjct: 419 YS 420


>gi|311696343|gb|ADP99216.1| diguanylate cyclase [marine bacterium HP15]
          Length = 939

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 101/207 (48%), Gaps = 16/207 (7%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSA 117
           ++Y L+  LS  I +I I+ LL Y +  + +   +L  +   +++LS  D L+ L N S 
Sbjct: 728 VDYTLIWQLS--IAAIVIAFLLVYWNRKLNRLNHDLTEANETLAKLSVTDDLTKLGNRSY 785

Query: 118 FISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
           F             ++   ++   D D+FK+INDN+GH  GD  +  L++ +   F    
Sbjct: 786 FDQEFRKSFQWCQRHHSGFAVAMVDADHFKRINDNYGHEAGDICLQTLAELMRKHFRRET 845

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--R 227
             + R GGEEF   A      E        RK +E S  ++     +H+TIS G+A    
Sbjct: 846 DRLSRFGGEEFVIFASYEDNSEIRNRLESFRKHVEKS-CSVCGEHDVHLTISIGLATGIP 904

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNR 254
              +  +  + +ADQALY AK++GRNR
Sbjct: 905 GPDDSPAEFLRQADQALYQAKQNGRNR 931


>gi|307132492|ref|YP_003884508.1| GGDEF family protein [Dickeya dadantii 3937]
 gi|306530021|gb|ADM99951.1| GGDEF family protein [Dickeya dadantii 3937]
          Length = 525

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 106/227 (46%), Gaps = 14/227 (6%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE--------LF 94
           +   +I  +YI   P   L         L +IS   ++   Y+    LK         L 
Sbjct: 289 LLALSILAYYIA-KPLRQLSKSASSMDQLGVISKIRAVKAWYLEVEQLKRVLLMGTVLLH 347

Query: 95  ISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
               R+S  +  D LSG+LN       +  + S  +K+S++  DID+FK IND+FGH VG
Sbjct: 348 KRIGRLSSEAHTDPLSGMLNRRGMQESMEEIRSEYKKISVIAIDIDHFKVINDSFGHDVG 407

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+VI  LS Q+   F     V R+GGEEF     G+    A ++A  LR  + N+ + + 
Sbjct: 408 DEVIRKLSQQIRKNFRKTDLVCRIGGEEFLILLPGADIHVATVIAERLRNNVANT-VYMP 466

Query: 212 SGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                 +TIS G+      K  +   I  AD ALY AK  GRN+VV 
Sbjct: 467 GYRHHQVTISIGVTTFNPQKSALDIAIKTADNALYKAKNGGRNQVVV 513


>gi|251771515|gb|EES52092.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Leptospirillum ferrodiazotrophum]
          Length = 706

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 9/182 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           +    + E      +++  +R D L+ + N   F       ++        L++++ D+D
Sbjct: 252 LVFRDVTEKREMERQLAHQARYDYLTQIPNRVLFHDRFDQALARARRSGSPLALLYMDLD 311

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK+IND  GH  GD V+   +++LV        V R+GG+EF     G S +E  ++ +
Sbjct: 312 SFKEINDTLGHAAGDIVLRQAAERLVKAVREEDTVARMGGDEFTVIMTGFSGRE-EVVTS 370

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
             R  +  S+  +  G  + +T S G+A      E   +++  AD A+Y AK+   N VV
Sbjct: 371 VGRLFLALSEPMMVGGQEVSVTASVGVAVFPEDGEEADSLLRHADIAMYKAKERRGNAVV 430

Query: 257 CF 258
            F
Sbjct: 431 FF 432


>gi|154175016|ref|YP_001407900.1| 3-deoxy-d-manno-octulosonic-acid transferase [Campylobacter curvus
           525.92]
 gi|112803394|gb|EAU00738.1| 3-deoxy-d-manno-octulosonic-acid transferase [Campylobacter curvus
           525.92]
          Length = 422

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 63/184 (34%), Positives = 95/184 (51%), Gaps = 10/184 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVF 133
           L+  ++ +I  E   + N+I+  +  D L+ + N   F   +  Y        E  +I  
Sbjct: 240 LICRVNNTI--EAMENINQIANFANRDFLTSVYNRRYFYDDMTQYLAKAEETAEPYAIAM 297

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK IND +GH  GDKV+ FL+ +LV        V R GGEEF       S++EA 
Sbjct: 298 IDIDHFKNINDTYGHDSGDKVLQFLAKKLVDDTKGNDIVARFGGEEFCVVLKNISQEEAV 357

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
               +LR  I NS+I++     I+ T+S G+        +  ++  AD+ALY+AK+SGRN
Sbjct: 358 KFFVNLRAKIANSKISLKKNV-INFTVSIGVVFNRSDYRLDELLELADEALYIAKESGRN 416

Query: 254 RVVC 257
           RV  
Sbjct: 417 RVEV 420


>gi|51891704|ref|YP_074395.1| sensory box GGDEF domain-containing protein [Symbiobacterium
           thermophilum IAM 14863]
 gi|51855393|dbj|BAD39551.1| putative sensory box/GGDEF domain protein [Symbiobacterium
           thermophilum IAM 14863]
          Length = 375

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 70/275 (25%), Positives = 121/275 (44%), Gaps = 33/275 (12%)

Query: 8   FLSIWLCHEKNLESF---SPHTFMIYFSIFF------SIFIATVIFIANIFLFYIGLTPF 58
           +L ++     +LE F   SP   +    +        S++I T +++    L  +GL   
Sbjct: 107 YLGLFSADSLSLERFARLSPWVSVALAGLLVISGTRRSVWIGTAVYLG---LLALGLVRL 163

Query: 59  YGL-----EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ----LSRIDCL 109
           +          L   L+   ++  + L L + + S L+  +    +I++    L+  D L
Sbjct: 164 FRAGPQPTREALFGPLAHFYLANAVLLWLMH-AWSELQRQYARTRQIARSMASLAHTDPL 222

Query: 110 SGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
            G+ N           I       +  +++ FD+D FKQIND +GH  GD  +  ++  +
Sbjct: 223 LGIPNRRQMELLIEQEIRCAEEGGQPATMIMFDVDRFKQINDMYGHEAGDAALRAVATTV 282

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                    VGR GG+EF      +   +A  LA  + + +      +S    I +TIS 
Sbjct: 283 RQALRATDHVGRWGGDEFIILVRVNETAQAYQLAQRVGEAVHQ---KLSEHFPI-VTISL 338

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           G+A     + +S+ + RAD A+Y AK+SGRNRVV 
Sbjct: 339 GVAPYRPGDTVSSWVSRADAAMYRAKESGRNRVVV 373


>gi|323495196|ref|ZP_08100280.1| protein kinase [Vibrio brasiliensis LMG 20546]
 gi|323310555|gb|EGA63735.1| protein kinase [Vibrio brasiliensis LMG 20546]
          Length = 1679

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 83/175 (47%), Gaps = 13/175 (7%)

Query: 91   KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--------KLSIVFFDIDYFKQI 142
            ++L      +  LS  D L+GL N       +              +SI+  DID+FK I
Sbjct: 1507 EQLTEKNEELYMLSTTDQLTGLYNRRYVEERIHEALRQEPGDGSTPVSILMLDIDHFKSI 1566

Query: 143  NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
            ND FGH VGDKVI  +S  +     +    GR GGEEF    + S  + A   A  L  I
Sbjct: 1567 NDQFGHDVGDKVIVNVSGSIRKSVRSVDIPGRWGGEEFIVLCM-SDLEGAVSNAEKLGNI 1625

Query: 203  IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I        + P   +T+S G+     ++ + +++ R D+ALY AK SGRN+++ 
Sbjct: 1626 IAEQ----DNSPVGQVTVSIGVTSLLSQDTVDSLLTRVDKALYQAKNSGRNQIII 1676


>gi|317131843|ref|YP_004091157.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Ethanoligenens harbinense YUAN-3]
 gi|315469822|gb|ADU26426.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Ethanoligenens harbinense YUAN-3]
          Length = 865

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 11/179 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
            +Y +I  ++  D L+ L N S F       I +      ++ ++F D+D FK IND  G
Sbjct: 430 RAYEKIEFMAYYDNLTKLPNRSMFYKEAGTAIRAAQQGARQVGVMFLDLDSFKSINDTMG 489

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILANDLRKIIENS 206
           H  GD++I  ++  L         + R GG+EF      G  E E  ++A+ +  + +  
Sbjct: 490 HQTGDRLIRDVAQTLSRQLSDMAVLARFGGDEFLVLCPAGQGEAEIRMIADRIMTVFK-- 547

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +  +  G  + IT S GIA      E   ++I  AD A+Y AK+ G+N+    S     
Sbjct: 548 RPFLIKGNEVFITASMGIALFPQDGEDPESLIKHADIAMYQAKEKGKNQYAICSAEMKR 606


>gi|229587759|ref|YP_002869878.1| hypothetical protein PFLU0183 [Pseudomonas fluorescens SBW25]
 gi|229359625|emb|CAY46467.1| conserved GGDEF domain protein [Pseudomonas fluorescens SBW25]
          Length = 335

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
              + E       + +L+  D L+   N   F                 L+ +  DID F
Sbjct: 157 AEDITEKKQLELELHRLATTDVLTQSSNRRHFFECANQAFDTACAQGAPLAFLLLDIDDF 216

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND +GH  GD+V+  +++    V       GR+GGEEFAA   G + + A  +A  L
Sbjct: 217 KDVNDTYGHLEGDQVLRRIAESGRGVLRRGDLFGRIGGEEFAAVLPGCAPEMALQVAERL 276

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            K I+    +   G +  +TIS G+A     +  + ++  RAD A+Y AK+ G+NRV+ 
Sbjct: 277 GKEIQALSFSY-EGQAFSVTISQGLANLSEADSTLDSLFARADAAMYEAKRLGKNRVIA 334


>gi|229013254|ref|ZP_04170395.1| Sensory box/GGDEF family protein [Bacillus mycoides DSM 2048]
 gi|228748021|gb|EEL97885.1| Sensory box/GGDEF family protein [Bacillus mycoides DSM 2048]
          Length = 430

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + EL   Y    +L+ ID L+ + N   F   L          +EK++++ FDID FK +
Sbjct: 254 ITELDEIYQEQERLAMIDSLTEIYNRLKFQQILETEWENVLRNDEKVALILFDIDNFKSV 313

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +  L+D +           R GGEEF      + E+EA  +A  LR  
Sbjct: 314 NDTYGHDFGDLALVQLADLMKSKVEDQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 373

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IE    +  S     +T S G+A          ++ RAD ALY AKK+G+N+V  +
Sbjct: 374 IETKHFSGIS----KLTASFGVALYEQGITREELMQRADIALYEAKKNGKNQVCIY 425


>gi|193222416|emb|CAL63012.2| Conserved hypothetical protein; putative GGDEF domain
           [Herminiimonas arsenicoxydans]
          Length = 362

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 14/179 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           E  I+  R+  +   D L+G+ N       L         +   LS ++ D+D+FK++ND
Sbjct: 181 ENVINNERLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGHTLSAMYIDLDFFKKVND 240

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH  GD+V+  ++ ++         +GR GGEEF    + +  + A  +A  +R  I 
Sbjct: 241 NYGHQGGDEVLREVAARIKAELRLSDALGRFGGEEFVVLLIDAGMEAALAVAERMRSSIA 300

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIST-------IIYRADQALYVAKKSGRNRVV 256
           N  + +SSG  + +++S G++     E           ++ +ADQALY+AK+ GRN+V+
Sbjct: 301 NRPLVLSSGEQLRLSVSIGVSTLQAIERKDEVATIAQQLLAKADQALYLAKQGGRNKVM 359


>gi|16329450|ref|NP_440178.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
 gi|1651932|dbj|BAA16858.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
          Length = 840

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 86/213 (40%), Gaps = 12/213 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +  E  S+  IS    ++  Y++    + +       +   +  D L+GL N       L
Sbjct: 369 LYWERASISPISNQQGIVTHYVAVKEDITKEKQQAEALFHQAHYDHLTGLPNRILAKDRL 428

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
               E          ++F D+D FK++ND  GH  GD+++  +S++L         V RL
Sbjct: 429 QQAIESALRQKHIFGLMFLDLDNFKKVNDTLGHDAGDQLLVEVSERLQRALRQTDTVARL 488

Query: 176 GGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PI 233
           GG+EF       S  ++   +A  L +++   Q     G    +  S GI          
Sbjct: 489 GGDEFLIILDQVSHSRKLMAIAQRLLRVMR--QPVNLQGLEFFVHGSIGITVFPDDGFHA 546

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             ++  AD A+Y AK +GRN    F+   N   
Sbjct: 547 DVLLRNADTAMYAAKLAGRNMFRFFTPHMNQAA 579


>gi|126172780|ref|YP_001048929.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|217974887|ref|YP_002359638.1| diguanylate cyclase [Shewanella baltica OS223]
 gi|304410888|ref|ZP_07392505.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|307304941|ref|ZP_07584691.1| diguanylate cyclase [Shewanella baltica BA175]
 gi|125995985|gb|ABN60060.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|217500022|gb|ACK48215.1| diguanylate cyclase [Shewanella baltica OS223]
 gi|304350785|gb|EFM15186.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|306912343|gb|EFN42767.1| diguanylate cyclase [Shewanella baltica BA175]
          Length = 328

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 76/272 (27%), Positives = 122/272 (44%), Gaps = 29/272 (10%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63
              D  + WL  ++ +ES     FM+    F S      +F       +    P  G   
Sbjct: 60  RFPDLPATWL--KQKMES----VFMLKNRAFISWEQRPYVFQ------FKNYRPITGRAD 107

Query: 64  ILVENLSLVIISIT------ISLLLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNH 115
            + +N++L+ ++        IS+++  ++   +   +L  +  ++ +LS+ D L+ L N 
Sbjct: 108 YMYQNVTLLPLASLTGQVTHISVIIYDVTDIAINKLQLKAANEQLERLSQTDGLTQLHNR 167

Query: 116 SAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
             +   L         Y+   S+V  DID FK IND++GH  GDKVI  ++  L      
Sbjct: 168 RHWQECLDHEYDIYARYSGMASLVMIDIDNFKHINDSYGHVAGDKVIQHIAHLLSQSLRE 227

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER- 227
               GR GGEEFA     +S  +A      LR+ I  S I +     I +T+S G+ E  
Sbjct: 228 TDCAGRYGGEEFAVVLPKTSGADAMYFTERLREKIAASVI-LYESLKISVTVSLGVCEIG 286

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            H    S+ I  +D+ALY AK+ GRN  V  +
Sbjct: 287 SHITSSSSWISCSDKALYEAKQKGRNCSVLHT 318


>gi|254719967|ref|ZP_05181778.1| GAF/GGDEF domain-containing protein [Brucella sp. 83/13]
 gi|306837255|ref|ZP_07470142.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653]
 gi|306407659|gb|EFM63851.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653]
          Length = 386

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 91/192 (47%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS--- 130
           L++G I+     I  +   +  R++  +  D L+ L N       ++   S  +  S   
Sbjct: 192 LMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGKLLTQKKSARDGFSRDG 251

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SS 188
            ++  D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF     G +S
Sbjct: 252 FLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGDTS 311

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++  I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK
Sbjct: 312 KEQTDIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAK 370

Query: 249 KSGRNRVVCFSD 260
             G+NR   F +
Sbjct: 371 SKGKNRFEYFEE 382


>gi|220934593|ref|YP_002513492.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995903|gb|ACL72505.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 314

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 83/176 (47%), Gaps = 11/176 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           +EL      + +LS  D L+GL N   F S L          ++ LS++  DIDYFKQ N
Sbjct: 135 QELVRLQKELEELSFKDGLTGLANRRMFDSVLSLEWSNARRNHQPLSLILLDIDYFKQYN 194

Query: 144 DNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD  +  ++  L         F+ R GGEEF      +  Q A  +A   R +
Sbjct: 195 DCYGHLQGDDCLMRVARILESAATRARDFIARFGGEEFVLILPETDAQAAEKVAQRCRTL 254

Query: 203 IENSQINISSGPSI-HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           I ++ I   S  S+  +T S G++     H +     +   D+ LY AK+ GRNRV
Sbjct: 255 ILDAGIPHESSESLPFLTASLGVSTIIPSHGDEPGEFVDEVDRLLYKAKQEGRNRV 310


>gi|197105175|ref|YP_002130552.1| GGDEF family protein [Phenylobacterium zucineum HLK1]
 gi|196478595|gb|ACG78123.1| GGDEF family protein [Phenylobacterium zucineum HLK1]
          Length = 349

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 60/184 (32%), Positives = 92/184 (50%), Gaps = 8/184 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYF 139
           + + L  L     ++ + +  D LSGL N  AF  +L            +++   DID+F
Sbjct: 162 TTAELGRLREHLEQVRRDAMTDALSGLANRKAFDEALERACDQGEQGGPVTLAVIDIDHF 221

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND +GH  GD+VI +++  +      P    R GGEEFA    G S +++  +   +
Sbjct: 222 KSFNDTWGHQTGDQVIRYVASVIQRCSPAPRVSARYGGEEFAIIFPGESARDSLAVLEAV 281

Query: 200 RKIIENSQINISSGPS--IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R+ + +  +   S       ITISAGIAER   E  ++++ RAD ALY +K+ GRNR  C
Sbjct: 282 REEVSSRILKRRSTNEDLGAITISAGIAERKPGESPASLVERADSALYASKRGGRNRTSC 341

Query: 258 FSDI 261
              I
Sbjct: 342 ADPI 345


>gi|16329623|ref|NP_440351.1| PleD [Synechocystis sp. PCC 6803]
 gi|1652106|dbj|BAA17031.1| PleD [Synechocystis sp. PCC 6803]
          Length = 464

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 11/175 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIN 143
           ++L     R+  L+  D L+ + N   F S L             +S++  D+DYFK  N
Sbjct: 279 QQLEQVNQRLKHLAIYDELTQIPNRRYFTSYLEQEWRQCLRQKSPISLILCDVDYFKNYN 338

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH +GDK +  ++  +          + R GGEEF      + +  A  +   +   
Sbjct: 339 DLYGHQMGDKCLQSVAKVIQNALKRPSDVLARYGGEEFIVILPYTDQSGAYTVGQRIHHC 398

Query: 203 IENSQINISSGP-SIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNR 254
           +  +QI+ +  P S ++TIS GI           S +I  ADQALY AK +GRN+
Sbjct: 399 LAEAQISHADSPTSRYLTISLGIGTTVPLLHYHPSDLIKIADQALYAAKAAGRNQ 453


>gi|153010975|ref|YP_001372189.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188]
 gi|151562863|gb|ABS16360.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188]
          Length = 473

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 90/174 (51%), Gaps = 9/174 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQ 141
           +L ELF +   +   +  D L+  LN     S L             LS++  DID+FK 
Sbjct: 293 LLSELFQAAAAME--TGRDPLTRALNRRFMPSILTREVRMASQKAMDLSVLMIDIDHFKN 350

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH  GD V+  +++ ++ +     FV R GGEEF  A + + E +A  +A +LRK
Sbjct: 351 INDTYGHSSGDAVLQQVAEAILSLCRPSDFVFRYGGEEFLVALVEADENKAFTIAEELRK 410

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I    +N+  G    +T+S G+A        S ++  AD+ALY AK++GRNR 
Sbjct: 411 QIAQQPLNLPDGARQSVTLSIGVAAFNGHPDYSHLVNAADRALYRAKQAGRNRC 464


>gi|146280455|ref|YP_001170608.1| sensory box protein [Pseudomonas stutzeri A1501]
 gi|145568660|gb|ABP77766.1| sensory box/GGDEF domain protein [Pseudomonas stutzeri A1501]
          Length = 269

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 80/179 (44%), Gaps = 8/179 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139
              + E       + +L+  D L+   N   F             +   L+ +  DID F
Sbjct: 90  AEDITEKKQLEGELQRLATTDVLTQSSNRRHFFECARIEFERARQFASSLAFLLLDIDDF 149

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND  GH +GD+V+  ++     V       GR+GGEEFAA   G     A  +A  L
Sbjct: 150 KRINDTHGHQMGDQVLQKVARCGAAVLRQSDLFGRIGGEEFAAVLPGCQPDLAEQIAERL 209

Query: 200 RKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++ IE       +G    +T S G+   R     +S +  RAD A+Y AK+ G+N+V+ 
Sbjct: 210 QREIERVVFTAENGERFRVTASLGLTYLRASDAELSAVFARADAAMYTAKRLGKNQVIV 268


>gi|95928291|ref|ZP_01311039.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
 gi|95135562|gb|EAT17213.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
          Length = 564

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 11/180 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
              + E      +I +L+  D L+GL N + F   L          N   +I F D+D F
Sbjct: 385 ARNITENKQQEAQIRKLAYYDALTGLPNRTLFHDRLSQALLQCERENSHGAIAFLDLDLF 444

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND++GH  GD ++  ++ +L+        V R+GG+EF        ++++A++   L
Sbjct: 445 KSVNDSYGHAAGDMLLKVVAKRLMGCVRESDTVARIGGDEFLLILRDLKDRDSAVIL--L 502

Query: 200 RKIIENSQINISSGPS-IHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
            ++IE+ +  I+     I+ + S G+     H   I  ++  AD A+Y AK+SGRN    
Sbjct: 503 EQLIESIRKPITLNTEIINTSASVGLCFYPQHGTTIDDLLKCADGAMYDAKRSGRNTYTI 562


>gi|265984977|ref|ZP_06097712.1| predicted protein [Brucella sp. 83/13]
 gi|264663569|gb|EEZ33830.1| predicted protein [Brucella sp. 83/13]
          Length = 396

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 91/192 (47%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS--- 130
           L++G I+     I  +   +  R++  +  D L+ L N       ++   S  +  S   
Sbjct: 202 LMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGKLLTQKKSARDGFSRDG 261

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SS 188
            ++  D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF     G +S
Sbjct: 262 FLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGDTS 321

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++  I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK
Sbjct: 322 KEQTDIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAK 380

Query: 249 KSGRNRVVCFSD 260
             G+NR   F +
Sbjct: 381 SKGKNRFEYFEE 392


>gi|198283533|ref|YP_002219854.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|198248054|gb|ACH83647.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidithiobacillus ferrooxidans ATCC 53993]
          Length = 1045

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 12/190 (6%)

Query: 80  LLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +LLG +     + E       ++  +  D L+GL N   F+  LG        +   L++
Sbjct: 473 VLLGVVLVFHDVTEKRRLIAELAHQATHDALTGLPNRVLFMDRLGHDRAQTLRHEHLLAV 532

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQ 190
              D+D FKQ+ND+FGH  GD ++  ++ +L     +   + R+GG+EF        S +
Sbjct: 533 GILDLDGFKQVNDHFGHAAGDALLQEMAQRLRREMRSGDTLARMGGDEFGLLLSDVGSLE 592

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKK 249
           +       L +++            I ++ S G+      + +   ++  AD ALY AK 
Sbjct: 593 QVEDACTRLLEVLRA--PFYLGDEEIPLSSSIGLTSYPLDDSLPEDLLRHADLALYAAKA 650

Query: 250 SGRNRVVCFS 259
           +GR+R   F 
Sbjct: 651 AGRDRYHWFD 660


>gi|158521137|ref|YP_001529007.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3]
 gi|158509963|gb|ABW66930.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3]
          Length = 357

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 104/241 (43%), Gaps = 24/241 (9%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-----LVENLSLVIISITISLLLGYI 85
           F +    F+  V     ++   + L  +   E +     ++    LV+  + +S +  YI
Sbjct: 121 FRLRLREFMGLVALTVALYAGAMALLHYRHPEAVTVKLEIIRGAILVLSLLWVSYMANYI 180

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDY 138
           +            RI +++  D L+ + N       L              S+   D+D 
Sbjct: 181 AN--------LRRRIKEMASFDALTEVYNRREIFEILDREKSFSDRSAIPFSLCILDLDD 232

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK++ND +GH  GD+V+   +  L     T  +VGR GGEEF    +       +    +
Sbjct: 233 FKEVNDTYGHQAGDEVLKAFARALRENVRTEDYVGRYGGEEFLVVFVNFECRDNSVTCVD 292

Query: 198 DLRKIIENSQIN-ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            L K+ E      I+ G  + IT S G++     E I  +I RADQALY AK +G+NR+V
Sbjct: 293 RLLKVTERLTFPGIADG--LKITTSIGVSAYRPSETIDAVIARADQALYEAKAAGKNRIV 350

Query: 257 C 257
           C
Sbjct: 351 C 351


>gi|104782182|ref|YP_608680.1| diguanylate cyclase [Pseudomonas entomophila L48]
 gi|95111169|emb|CAK15889.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           entomophila L48]
          Length = 524

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 51/215 (23%), Positives = 95/215 (44%), Gaps = 18/215 (8%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKE-------LFISYNRISQLSRIDCLSGLL 113
             + ++++++++++ +      G++    L+E       L  ++  +  ++  D L+GL 
Sbjct: 298 WRHDMLKSVAVLVLLLIGLAGFGWVVLRQLRERIAIERALHQAHQTLKAMALTDSLTGLG 357

Query: 114 NHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV- 165
           N           I       + L++V FD+D+FK  ND +GHP GD  +    + L    
Sbjct: 358 NRRRLDAVLEPEIRRARRQGQSLALVMFDLDHFKPYNDRYGHPAGDACLRQFGELLRQAL 417

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                   R GGEEF      +  Q AA++  ++   + ++ I     P   ++ SAGIA
Sbjct: 418 KRPGDLAVRYGGEEFTLLLPDTDTQGAALIVQEILHALRHAAIEHLGSPLGQVSASAGIA 477

Query: 226 ERCH---KEPISTIIYRADQALYVAKKSGRNRVVC 257
                        ++  AD+ALY AK+ GR+R   
Sbjct: 478 VAAPSLENVTPENLMTAADEALYTAKRQGRDRYCL 512


>gi|83593925|ref|YP_427677.1| diguanylate cyclase [Rhodospirillum rubrum ATCC 11170]
 gi|83576839|gb|ABC23390.1| Putative diguanylate cyclase (GGDEF domain) [Rhodospirillum rubrum
           ATCC 11170]
          Length = 569

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 85/172 (49%), Gaps = 8/172 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNF 146
                +    +R D L+GLLN  +F+            Y    +++  D+D+FK +ND  
Sbjct: 390 QERKRQAEWEARTDFLTGLLNRRSFVDLAERELARSLRYQRPFTLLMIDVDHFKAVNDTR 449

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD V+  ++ ++          GR GGEEFAA  + +   EA  +A  L  ++   
Sbjct: 450 GHLVGDVVLQNVARRIKETLRLIDIFGRTGGEEFAAVIVETGGPEALEIARRLCAVVARD 509

Query: 207 QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           +I    G  I +TIS G+     +    S ++  ADQALY AK++GRN+VV 
Sbjct: 510 EIVQPEGEPIGVTISIGLTRSNGRSISFSALMNEADQALYAAKRAGRNQVVI 561


>gi|330808281|ref|YP_004352743.1| sensory box GGDEF domain-containing protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327376389|gb|AEA67739.1| putative sensory box GGDEF domain-containing protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 308

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 95/185 (51%), Gaps = 10/185 (5%)

Query: 82  LGYISGSILKELFIS--YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           L  I  ++L  L  +  Y   +Q +  D L+G  N  A   +L         +++ LS++
Sbjct: 123 LESIMSTLLYPLRNALLYRAATQSALRDPLTGTGNRIAMDQTLMREIDMAKRHSQPLSVL 182

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK+IND+ GH VGD+V+  +++ +         V R GGEEF      +S   A
Sbjct: 183 MLDIDHFKRINDSHGHGVGDEVLKAVAESIKSQLRNVDMVFRFGGEEFLILLANTSRDAA 242

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           A++   LR     +Q   ++G  I +T+S G A     E   +++ RAD ALYVAK+ GR
Sbjct: 243 AMVGERLRYA-AQTQDYFAAGTRIELTVSLGCATLLPGESSESLLRRADSALYVAKREGR 301

Query: 253 NRVVC 257
           NR+  
Sbjct: 302 NRLAM 306


>gi|283835519|ref|ZP_06355260.1| sensory box/GGDEF domain/EAL domain protein [Citrobacter youngae
           ATCC 29220]
 gi|291068725|gb|EFE06834.1| sensory box/GGDEF domain/EAL domain protein [Citrobacter youngae
           ATCC 29220]
          Length = 730

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 14/188 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L+ +     ++  ++  D L+GL N  +F  +L           +  +++  D+D FK +
Sbjct: 286 LQRMHEMSQKMEHMAHHDSLTGLPNRVSFGQALDKRVSEIHLDEKPFNLLLIDLDNFKPV 345

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSEQEAAILANDLR 200
           ND FGH  GD+++  ++ +L ++ G      RLGG+EFA       ++ +EA  LA  + 
Sbjct: 346 NDTFGHKAGDELLISVAQRLQLLLGPNDIAARLGGDEFAILQHVSDNAIREANRLAKRII 405

Query: 201 KIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +  S     S  +  I+ S GI    +     ST++  AD A+Y +K  GR     F 
Sbjct: 406 RAL--STPFTWSTHTFSISCSIGITTAPYQGNNTSTLMINADLAMYASKHHGRGCFHFFE 463

Query: 260 D--IENNT 265
           D  +   T
Sbjct: 464 DGMVMKQT 471


>gi|187927096|ref|YP_001893441.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12J]
 gi|187728850|gb|ACD30014.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12J]
          Length = 887

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 11/182 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + E   +   I + +  D L+ L N   F + L             ++++F D+D FK+
Sbjct: 441 DITEKKRAEEVIWRQANFDTLTELPNRHMFYAKLRQEILHARQAATAVALLFIDLDRFKE 500

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD ++  ++ ++  +      V RLGG+EF        +  AA  A  +R 
Sbjct: 501 VNDTLGHDQGDVLLKEIARRISAIVRGTDTVARLGGDEFTIILPNLPDAGAA--APIIRS 558

Query: 202 IIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++      +  G  S+ +T S G+A      +   +++ RADQA++ AK +GRN+   F+
Sbjct: 559 LLARIATPVQLGEESVEVTASIGLALYPRDADNAESLLVRADQAMFAAKSAGRNQWSVFT 618

Query: 260 DI 261
             
Sbjct: 619 PA 620


>gi|297582608|ref|YP_003698388.1| diguanylate cyclase [Bacillus selenitireducens MLS10]
 gi|297141065|gb|ADH97822.1| diguanylate cyclase [Bacillus selenitireducens MLS10]
          Length = 335

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 84/184 (45%), Gaps = 11/184 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVF 133
           +L  +     +EL +S  +    +  D L+GL N ++    L              +++ 
Sbjct: 156 VLERLVQDRTRELELSLEQQRDAASTDRLTGLRNRASLEDLLEMEINRAVQEEAVFAVIL 215

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D+FK+IND  GH  GD  +  L++ L+        VGR GGEEF      + E+ + 
Sbjct: 216 MDMDHFKRINDTHGHQAGDSCLKELAELLIRQSRPTDIVGRWGGEEFLIICPNTDERGSK 275

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            LA   R  +   +   +       T S G+A     +   T+I RAD+ALY AK +GRN
Sbjct: 276 DLAESFRLAVSAYRFTKTGAQ----TASFGVAAFMTGDDGETLIGRADRALYRAKGAGRN 331

Query: 254 RVVC 257
           RV  
Sbjct: 332 RVEV 335


>gi|148978358|ref|ZP_01814863.1| hypothetical protein VSWAT3_00893 [Vibrionales bacterium SWAT-3]
 gi|145962517|gb|EDK27795.1| hypothetical protein VSWAT3_00893 [Vibrionales bacterium SWAT-3]
          Length = 558

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 8/172 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHP 149
             ++   +  D L+GL N   F   L  ++       + LS++  D+D+FK+ NDNFGH 
Sbjct: 368 QEKLRSQALSDPLTGLFNRRFFEQKLEEHSMNSATSEQPLSLLMLDLDHFKRFNDNFGHD 427

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  +S  L           RLGGEE A      + Q+A      L   + +  + 
Sbjct: 428 AGDFVLKEISALLKQSVSEDEIACRLGGEELAVLLPHYTMQQATEFGQTLCDAVRSMHLE 487

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                   + +S G+A          +++  AD ALY+AK  GR+RVV + +
Sbjct: 488 HKGLSLGQLGVSIGVATYPKPASDTESLVKMADNALYMAKDMGRSRVVNYDE 539


>gi|78186913|ref|YP_374956.1| diguanylate cyclase [Chlorobium luteolum DSM 273]
 gi|78166815|gb|ABB23913.1| diguanylate cyclase (GGDEF domain) [Chlorobium luteolum DSM 273]
          Length = 424

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 71/268 (26%), Positives = 111/268 (41%), Gaps = 35/268 (13%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS--LVIISITISLLLGYI 85
           ++ F+  F  FI  ++   N    ++ L   Y L  I +  L+  L +I+  I   +   
Sbjct: 148 LVLFTHMFIFFILALLLSLNFVAGWM-LHFNYRLTLIPLRQLADQLKLINRDIPESIHDT 206

Query: 86  SGSILKEL-----------------------FISYNRISQLSRIDCLSGLLNHSAF---- 118
           +  + KEL                            ++ ++   D  +GL N+  F    
Sbjct: 207 AEEMKKELTATAHSHDITQITESIMNFCGDIEAKNKKLDEIFIRDEKTGLYNYRHFKEHL 266

Query: 119 ---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
              +     ++  +S+   DID+FK  ND  GH  GD V+  L+  +           R 
Sbjct: 267 IIDVERAKRFHSNVSLAMIDIDHFKLYNDAHGHIAGDHVLEILAGIIKEESRLSDIPSRF 326

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHITISAGIAERCHK-EPI 233
           GGEEFA     +  + A  ++  LRKII  + +      PS  +T+S GIA         
Sbjct: 327 GGEEFAILFPKTDAETALDISERLRKIISATPVPHEHQQPSGQLTVSIGIATFPDDASDW 386

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDI 261
            T+I  AD+ALY AK  GRN VV FS +
Sbjct: 387 YTLINNADRALYEAKAQGRNSVVTFSSL 414


>gi|95929050|ref|ZP_01311795.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95134951|gb|EAT16605.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 766

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 72/188 (38%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
             +         +   S  D L+GL N       +              ++   D+D FK
Sbjct: 318 RDITIRKKYEKELEHQSNHDALTGLANRVLLDDRIQQAIVHAERAQRNTAVFLLDLDRFK 377

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
            IND+ GH  GD V+  ++++L         + RLGG+EFA      +   +A I+A  +
Sbjct: 378 VINDSLGHSQGDAVLLAVAERLSACISPGDTLSRLGGDEFAIVMTHVNHPADARIMAQKI 437

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
               E  Q        + IT S G +      E    ++  AD A+Y AKK G N     
Sbjct: 438 LNAFE--QPFPLGNRELRITTSIGASLYPRDGEQSEDLLRHADAAMYQAKKQGGNGFQFC 495

Query: 259 SDIENNTC 266
           S+  +   
Sbjct: 496 SEEMDTRA 503


>gi|330958705|gb|EGH58965.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 524

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 79/179 (44%), Gaps = 11/179 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDN 145
           L      +  ++  D L+GL N   F                 LS++  D D+FK+ ND+
Sbjct: 322 LIQLNQHLELIASEDKLTGLANRRRFDQFLDVEFKRARRERSMLSLILIDADHFKRYNDH 381

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD+ +  L+  +      P     R GGEE A     + E  A  +A  + K I+
Sbjct: 382 YGHLAGDECLVTLARLVEQCIRRPCDVAARYGGEEMAVVLPDTDESSARQVAESILKSIQ 441

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFSD 260
           N +I     P   +T+S G+A     +       +I  AD+ALY AK  GRNRV   S+
Sbjct: 442 NERIEHPDSPYGIVTVSLGVATFIGTDRQQDQRGLIELADRALYAAKSQGRNRVNVASE 500


>gi|323496636|ref|ZP_08101688.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
 gi|323318289|gb|EGA71248.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
          Length = 319

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 62/172 (36%), Positives = 91/172 (52%), Gaps = 5/172 (2%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           ++ L      + Q +  D L+ L N  +F   I++L    +K+ ++  DID+FK  NDNF
Sbjct: 146 IQRLKAELAEVQQDALFDSLTSLYNRRSFDNDITTLCQSGQKMCLILADIDHFKGYNDNF 205

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD VI  ++ +L +     +   R GGEEFA        + A   A+ LR+ IE  
Sbjct: 206 GHLFGDAVIKGIAKRLHINARDGVHAYRFGGEEFALIVPNKQLRIARQYADSLRRSIEKL 265

Query: 207 QI-NISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            I +  SG  +  IT S G+AE    E   ++I RAD+ LY AK+ GRNRV+
Sbjct: 266 SIKDKRSGKQVGNITASFGVAELQPDESPESLIERADKLLYEAKQLGRNRVM 317


>gi|169826660|ref|YP_001696818.1| sensory box/GGDEF family protein [Lysinibacillus sphaericus C3-41]
 gi|168991148|gb|ACA38688.1| sensory box/GGDEF family protein [Lysinibacillus sphaericus C3-41]
          Length = 782

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 110/240 (45%), Gaps = 27/240 (11%)

Query: 48  IFLFYIGLTPFYGLEYILVENLS---LVIISITISLLLGYISGSIL-------KELFISY 97
           + LF I LT    L  ++V +++    V++  ++ +  G +SG ++       ++L  +Y
Sbjct: 283 VLLFAICLTSI--LISVIVRSITKPLQVLVDASVKVSEGDLSGHVIIKSQDEFQKLGDAY 340

Query: 98  NR----ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           N     +S+ +  D L+ L N   F       I+   S   K SI+F D+D FKQ+ND  
Sbjct: 341 NHMIDSLSKFAFYDPLTNLPNRRQFVFTLEQAITQASSEQSKFSIIFIDVDNFKQVNDTL 400

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIEN 205
           GH  GD+++  +++QL    G+   V RLGG+EF       ++      + + LR     
Sbjct: 401 GHSAGDELLQKVAEQLQSSIGSEGVVARLGGDEFVILLEHRADHAYLEKMLSSLRDSF-- 458

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            Q     G    + +S GIA           ++  AD A+Y AK+SG N    F +  N 
Sbjct: 459 VQPFTIHGQITFVQMSLGIASYPIDGVTQEELLKHADIAMYKAKESGGNNHRFFDNKMNE 518


>gi|158338331|ref|YP_001519508.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Acaryochloris marina MBIC11017]
 gi|158308572|gb|ABW30189.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Acaryochloris marina MBIC11017]
          Length = 898

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 82/199 (41%), Gaps = 13/199 (6%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
            +  +   +S ++  E       I + +  D L+GL N   F   L           + L
Sbjct: 425 ILRTMAASVSAAL--ERQDKDEIIHRQAFHDALTGLPNRVLFAERLDHALTDARRNQDNL 482

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-S 188
           +++F D+D FK IND  GH VGD+++  ++++L         V R GG+EF        +
Sbjct: 483 AVMFMDLDKFKTINDTLGHSVGDELLKEVANRLQHCLRGGDTVARWGGDEFTLLLAKIRT 542

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247
             +A   A  +    +  ++       I+I  S GIA      +    ++  AD ALY  
Sbjct: 543 IADATRTAQRILDAFK--EVVKIDHHEIYINASIGIACFPDDGQEAEVLLQNADVALYQC 600

Query: 248 KKSGRNRVVCFSDIENNTC 266
           K+ GR     +    N+  
Sbjct: 601 KEQGRGIFQVYDADMNSEA 619


>gi|120556696|ref|YP_961047.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120326545|gb|ABM20860.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 572

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 11/183 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFF 134
           L   +  + +++      + +L+R+D L+GL N                   +   +++ 
Sbjct: 383 LQDTTRELEQKVAHRTEELQRLARVDALTGLKNRRGLDEVMNEEIQRAEREQKGFGLLWL 442

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DIDYFK IND+ GH  GD+++  ++  L          GR GG+EF              
Sbjct: 443 DIDYFKAINDSQGHQAGDEILCRVALWLKAAIRPYDHPGRWGGDEFVVLLSPCDAATLEQ 502

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +A  +R  +E      S      +TIS G       E +  ++  ADQALY AK++GRNR
Sbjct: 503 IACRIRASVEQE----SQRTGTSVTISVGGYFCRPGEDLDALLRNADQALYEAKRNGRNR 558

Query: 255 VVC 257
           V  
Sbjct: 559 VCI 561


>gi|118579233|ref|YP_900483.1| diguanylate cyclase [Pelobacter propionicus DSM 2379]
 gi|118501943|gb|ABK98425.1| diguanylate cyclase [Pelobacter propionicus DSM 2379]
          Length = 249

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 94/210 (44%), Gaps = 8/210 (3%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L      + ++   L L +  + +++     +   ++ L  +Y  +  ++  D L+G  N
Sbjct: 40  LVDLLHFDPLITRKLVLRVEGMRLAMGASCAAHIRVRPLKSAYLHLRDMAHYDNLTGCFN 99

Query: 115 HSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
             A        +    S    L+++  D+D+FK+IND FGH  GD V+   +  +     
Sbjct: 100 RHAAGTVVRQEVERFSSLGLPLALLMADLDHFKRINDTFGHTSGDDVLKSFASLIRQGLR 159

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
                 R GGEEF     G+ ++EA  +A   R+ I ++     +     +T+S G A  
Sbjct: 160 RSDLFCRWGGEEFLILLRGTLKEEALKIAERFRERIASALFPPFN-ERGAVTVSIGCACL 218

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               P+  +I  AD ALY AK+ GRNRV  
Sbjct: 219 PPGRPLERLIVDADCALYRAKQGGRNRVCL 248


>gi|325983256|ref|YP_004295658.1| diguanylate cyclase [Nitrosomonas sp. AL212]
 gi|325532775|gb|ADZ27496.1| diguanylate cyclase [Nitrosomonas sp. AL212]
          Length = 373

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/182 (31%), Positives = 93/182 (51%), Gaps = 17/182 (9%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFG 147
           ++  RI ++S  D L+   N   F   L         +N+ L  +F D+D+FK+IND+ G
Sbjct: 190 LNQQRIKEISYQDALTQAYNRRYFDLRLKDEIARCIRWNDDLICMFLDVDHFKKINDSHG 249

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  +   +     +   V R GGEEF  A   ++   A  +A  LRK I +S 
Sbjct: 250 HQTGDSVLRHMVSLIKEQVRSCDIVARYGGEEFVVALPSTTLHAAHEIAERLRKAICSSA 309

Query: 208 INISSGPSIHITISAGIAERCH-----KEPIS----TIIYRADQALYVAKKSGRNRVVCF 258
           I +     ++I++S G+A         ++       T++ RAD+ALY AK+ GRN+VV +
Sbjct: 310 IILYD-KQLNISVSIGMASLRDLPVALQQDADFICTTLLERADKALYEAKEGGRNQVVVY 368

Query: 259 SD 260
           ++
Sbjct: 369 TN 370


>gi|302340439|ref|YP_003805645.1| 7TM domain sensor diguanylate cyclase [Spirochaeta smaragdinae DSM
           11293]
 gi|301637624|gb|ADK83051.1| 7TM domain sensor diguanylate cyclase [Spirochaeta smaragdinae DSM
           11293]
          Length = 589

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 63/177 (35%), Positives = 89/177 (50%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           EL     R+ +LSRID L+ + N   F              N  LS++  D+D+FK  ND
Sbjct: 400 ELGQVNQRLERLSRIDPLTEIPNRRYFEEVYTGEWRRSERENLPLSLIMMDVDFFKAYND 459

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           N+GHP GD  +  ++  +         FV R GGEEF     G   + AA +A  LR+ I
Sbjct: 460 NYGHPTGDVCLKKIATLVQESLKRGEDFVARYGGEEFIILLPGHPLESAAKVAERLRQGI 519

Query: 204 ENSQINISSGPSIH-ITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257
           ++  I  +       +T+S GIAE+  +  I    ++  ADQALY AK+SGRNRV  
Sbjct: 520 QDLNIVHAYSEVASVVTVSLGIAEKHIRPGIDRGILVKLADQALYSAKRSGRNRVSI 576


>gi|222109892|ref|YP_002552156.1| diguanylate cyclase [Acidovorax ebreus TPSY]
 gi|221729336|gb|ACM32156.1| diguanylate cyclase [Acidovorax ebreus TPSY]
          Length = 388

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 108/237 (45%), Gaps = 18/237 (7%)

Query: 43  IFIANIFLFYIGLTP-FYGLEYILVENL--SLVIISITISLLLGYISGSILKELFISYNR 99
           ++    F   + ++P FY   + +++    ++++I +   +++      + + L      
Sbjct: 137 LYAMAAFSVAVVVSPRFYATTFDVMDGAYAAMILIVLAGCMVVNLRVQQMRQRLDRQREA 196

Query: 100 ISQ-------LSRIDCLSGLLNHSAFISSLG-----SYNEKLSIV--FFDIDYFKQINDN 145
           +++       L+  D L+GL N  A +  +          + +++    D+D+FK++ND+
Sbjct: 197 LAEALAENRALAMRDELTGLYNRRAMVELIQLECRRRRRGQGALLFAMIDVDHFKRVNDH 256

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH +GD V+   +D L         + R GG+EF         + A  L    R+ I  
Sbjct: 257 HGHAMGDHVLRVFADALRANVRETDVLARWGGDEFLLLLSDIEPRSAQTLLERTREAIAA 316

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             +  ++ P + +++SAG+A           + RADQALY AK  GRNRV    +++
Sbjct: 317 LPVP-NAPPDLRLSMSAGLALHLPHSSPQETLERADQALYAAKDQGRNRVALAPELQ 372


>gi|28900057|ref|NP_799712.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|260362250|ref|ZP_05775229.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
 gi|260880632|ref|ZP_05892987.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|260896587|ref|ZP_05905083.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|28808340|dbj|BAC61545.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086820|gb|EFO36515.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|308091814|gb|EFO41509.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|308115619|gb|EFO53159.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
 gi|328470040|gb|EGF40951.1| GGDEF family protein [Vibrio parahaemolyticus 10329]
          Length = 337

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 68/220 (30%), Positives = 114/220 (51%), Gaps = 21/220 (9%)

Query: 58  FYGLEYILVENLSLVIISITISLLLG------YISGSILKELFISYNRISQL-------- 103
           F  LE +   +LS+  + + I  L+       + +  + ++L  +   IS+L        
Sbjct: 116 FNKLEKVEDNSLSIEEVMVVIRQLVAESHEIRHSTKFLNRQLTNASEEISRLKHQLAEVQ 175

Query: 104 --SRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
             +  D LS L N  AF + L    + N+ ++++  DID+FK  NDN+GH  GD V+  +
Sbjct: 176 KDALFDGLSNLYNRRAFDTDLSMLINANQAMTLILLDIDHFKAFNDNYGHLFGDTVLKAI 235

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217
           + +L       +   R GGEEFA      S + A   A+ LR++IE  ++ +  SG  +H
Sbjct: 236 ARRLQQSCRDGVSAYRFGGEEFALIVPNKSLRIARQYADTLRRMIEKLRVRDKRSGTQVH 295

Query: 218 -ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            IT S G+AE    + + +++ +AD+ LY AK+ GRNRV+
Sbjct: 296 SITASFGVAEFEVGDTVDSLVNKADKQLYEAKQLGRNRVM 335


>gi|304411745|ref|ZP_07393357.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|307306203|ref|ZP_07585948.1| diguanylate cyclase [Shewanella baltica BA175]
 gi|304349933|gb|EFM14339.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|306911076|gb|EFN41503.1| diguanylate cyclase [Shewanella baltica BA175]
          Length = 340

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL  +   +  LS  D L+ + N   F   L          N  L+++  DID+FKQ ND
Sbjct: 161 ELAEANRELEILSNTDGLTNIGNRRLFDMMLQTEWSRGQRINSSLALIMLDIDHFKQFND 220

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           ++GH  GD  +  L+  L          V R GGEEF        +Q     A  + ++I
Sbjct: 221 HYGHLAGDDCLKQLASTLSQSGRRAGELVARYGGEEFVILLPNIDKQTVLDTAQHIHQLI 280

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +   I  ++     +T+SAG+A  +  +++    ++ +AD ALY AK +GRN +   ++
Sbjct: 281 QTIAIPHANTDLGIVTVSAGVAYLQPSNQQNALELVRQADAALYRAKSAGRNCIRVMNE 339


>gi|307726091|ref|YP_003909304.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1003]
 gi|307586616|gb|ADN60013.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1003]
          Length = 647

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 104/241 (43%), Gaps = 13/241 (5%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           IF+A  I   +  L  I +      +   LV+    ++ +   S+ +  +    ++E   
Sbjct: 130 IFVAAPIIHNDRLLGSIVIVATTDAIRMQLVQYGCFLVGASLCSVWIASLVMRRMRERVS 189

Query: 96  SYNR-ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147
              + +  L+  D L+ L N  AF   L +        +++++++  D+D FK +ND  G
Sbjct: 190 RAEKDLEYLASTDPLTDLPNRRAFYDELKARLHRASAADKRVALMMVDLDNFKTVNDTLG 249

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKIIENS 206
           H  GD+++  +++ L  V      V R+GG+EFA      +S   A   A  + + +  S
Sbjct: 250 HGAGDELLKQVAEALRNVVRPNDLVSRIGGDEFAVVIGPDASRVRARATAGRIARNL--S 307

Query: 207 QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           +  +  G    +T S G +        ++ ++  AD ALY AK  G++  V F       
Sbjct: 308 RPFVLHGSDSAVTASVGFSVYPEDTGEMAELVSNADIALYSAKSRGKSIAVEFQSEMTAE 367

Query: 266 C 266
            
Sbjct: 368 A 368


>gi|254000421|ref|YP_003052484.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. SIP3-4]
 gi|253987100|gb|ACT51957.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. SIP3-4]
          Length = 681

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 11/182 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYF 139
           G  + E +    RI  L+  D L+ L N +  I            +     ++  D+D F
Sbjct: 241 GQDVTETYEYQERIHHLAYFDTLTKLPNRALLIDRVEQTIAEAERHAYPFGLIMLDLDRF 300

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILAND 198
           K+IND  GH +GD ++  ++ +L         V RLGG+EF          +    +A+ 
Sbjct: 301 KEINDTLGHTLGDVLLCEVASRLEKCVRPYDTVARLGGDEFGILVSEMRVPENITRVADK 360

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           + +  +  Q  +  G  + +T S GIA      + +  ++  AD AL+ AK  GRN    
Sbjct: 361 VLQAFD--QPFVVDGHDVFVTASLGIAAYPSDSQAVDDLLKYADSALFHAKHLGRNNFQF 418

Query: 258 FS 259
           +S
Sbjct: 419 YS 420


>gi|258405650|ref|YP_003198392.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692]
 gi|257797877|gb|ACV68814.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692]
          Length = 321

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 10/174 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           +EL  +  +I+++SR+D L+GL N S F   L         +  + +I+  D+D+FK+IN
Sbjct: 149 QELEWANEKITRISRMDYLTGLSNRSYFQERLKEIFALTKRHGLEFTILLADLDHFKRIN 208

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH +GDKV+      L     T     R GGEEF      +           +R+  
Sbjct: 209 DTYGHDMGDKVLQAFGTLLANECRTEDLPARYGGEEFILVFPKTHASGVITFYERIRR-- 266

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           E    ++   P   +T SAGI E        +++ +AD ALY AKK+GR+R V 
Sbjct: 267 ELIHSDLLPDPDF-VTFSAGITEYEEGGTEISLLKKADDALYEAKKNGRDRYVI 319


>gi|254469913|ref|ZP_05083318.1| response regulator PleD [Pseudovibrio sp. JE062]
 gi|211961748|gb|EEA96943.1| response regulator PleD [Pseudovibrio sp. JE062]
          Length = 352

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 9/170 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L      I   S  D L+ L N   F  SL          +  LS++  DID+FKQ NDN
Sbjct: 166 LQEGLEAIRYESLTDELTTLNNRKHFDQSLVRAVKEAEESHAPLSLLISDIDHFKQFNDN 225

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-IIE 204
           +GH  GD+V+  ++  +           R GGEEF      ++ ++A ++A  +RK ++ 
Sbjct: 226 YGHQTGDQVLRLVALAVKQNVKNNDIACRYGGEEFGIILPRTTIEDAKVIAEKIRKNVVA 285

Query: 205 NSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
              +  S+G ++  ITIS GI+     +   +++ RAD ALY AKK+GRN
Sbjct: 286 KELVKRSTGENLGRITISIGISTFRPGDSAESMVSRADLALYAAKKAGRN 335


>gi|167033056|ref|YP_001668287.1| diguanylate cyclase [Pseudomonas putida GB-1]
 gi|166859544|gb|ABY97951.1| diguanylate cyclase [Pseudomonas putida GB-1]
          Length = 523

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 112/240 (46%), Gaps = 32/240 (13%)

Query: 40  ATVIFIANIFLFYIGLT---PFYGL--------------EYILVENLSLVIISITISLLL 82
           A +  + ++ L+++ +T   P + L                  V         +  +LL 
Sbjct: 293 APLALVGSLLLWWLAMTIARPLWQLAAGARSMDRAGTAEHLHQVRAWYFEAAELKRALLF 352

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYF 139
           G    ++L+E      R+++ ++ D L+GL N  +    +S L +     + +  DID+F
Sbjct: 353 GL---NLLQERIG---RLNRDAQTDPLTGLGNRRSLEFSLSLLEAEGRAFAAIELDIDHF 406

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++NDN GH VGD+V+  L++ +         + R GGEEF     G+S + AA +A  L
Sbjct: 407 KRVNDNHGHEVGDQVLRRLAELMRRCCREGDLLCRTGGEEFLMLLPGASLEVAAAVAERL 466

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVC 257
           R  ++++ +     P   +TIS G+A             +  AD+ALY AK+ GRNRV  
Sbjct: 467 RVTVQDTPVE----PVGAVTISLGVARWDGDAGSKPMEALGLADRALYQAKQQGRNRVAI 522


>gi|119486060|ref|ZP_01620122.1| hypothetical protein L8106_06050 [Lyngbya sp. PCC 8106]
 gi|119456835|gb|EAW37963.1| hypothetical protein L8106_06050 [Lyngbya sp. PCC 8106]
          Length = 569

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 88/183 (48%), Gaps = 15/183 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQI 142
           L++L      +  LS  D L+GL N   F          LG  N  LS++  DIDYFK  
Sbjct: 378 LRQLEKQNLTLKSLSETDELTGLANRRWFNNMIEQEWQRLGHQNNSLSLLLVDIDYFKVY 437

Query: 143 NDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GHP GD  +  ++  L      +   V R GGEEFA     S+ Q    +A  ++K
Sbjct: 438 NDLYGHPAGDVCLQKIAQALTECVNRSTDLVSRYGGEEFAILLPMSNNQGGVQVAQRIQK 497

Query: 202 IIENSQINISSGPSI-----HITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNR 254
            I+  QI + +   I      +T+S G+A        +   ++  AD++LY +K++GRNR
Sbjct: 498 QIKALQITVKNSQIICFPEDVVTVSIGVASIIPSSDFNWRDLVEAADRSLYESKRTGRNR 557

Query: 255 VVC 257
           +  
Sbjct: 558 ITV 560


>gi|312194408|ref|YP_004014469.1| diguanylate cyclase [Frankia sp. EuI1c]
 gi|311225744|gb|ADP78599.1| diguanylate cyclase [Frankia sp. EuI1c]
          Length = 549

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 97/204 (47%), Gaps = 18/204 (8%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG- 123
           LV  +++VI +  I + + Y   S             +L+  D L+GL       + L  
Sbjct: 338 LVSAIAMVISTALIMIRMRYAEVSQ-----------RRLANTDVLTGLCTRRFLETRLAL 386

Query: 124 ---SYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                ++    L+++  D+D+FK +ND FGHP GD+ +A ++ +L  V  +   V R GG
Sbjct: 387 ASVRASQPGATLALLLIDVDHFKAVNDRFGHPAGDRALAEVARRLREVARSADVVARYGG 446

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EEFA       + +  +L   LR  +  S + +  G  + +T+S G A        + +I
Sbjct: 447 EEFALLTTYLGQDDLYVLGERLRLAVAASPVAVDDGIVLPVTVSVGAAATTLPASPAELI 506

Query: 238 YRADQALYVAKKSGRNRVVCFSDI 261
            RAD+ALY AK +GR+  V  S  
Sbjct: 507 DRADRALYAAKSAGRDCCVLASPA 530


>gi|261419676|ref|YP_003253358.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y412MC61]
 gi|319766494|ref|YP_004131995.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y412MC52]
 gi|261376133|gb|ACX78876.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y412MC61]
 gi|317111360|gb|ADU93852.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y412MC52]
          Length = 659

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 84/209 (40%), Gaps = 6/209 (2%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           E++ +E     II    +L    ++   + E      ++ QL+  D L+G+ N S F   
Sbjct: 192 EWVWMEAQGKAIIDEAGTLDCVIVTVKNISERKRYEEKLRQLAYFDSLTGIANRSYFERH 251

Query: 122 LGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           +          ++ + D D FK IND+F H  GD  +     ++        F  R+GG+
Sbjct: 252 IHELIASQTPFALCYLDFDKFKWINDHFSHQAGDYFLREAVKRVERALRPGDFFARIGGD 311

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTII 237
           EF       ++ E   LA  L       +        I  T+S GIA        I  ++
Sbjct: 312 EFVLLLPNITKTEMTALAERLVSSF--HEPFYYEKQLIQSTLSIGIAFFPKDSDRIEQVM 369

Query: 238 YRADQALYVAKKSGRNRVVCFSDIENNTC 266
             ADQALY  K+ GRN    +   E+   
Sbjct: 370 KYADQALYEVKERGRNGYAFYRPTEHRQA 398


>gi|126669000|ref|ZP_01739938.1| diguanylate cyclase (GGDEF domain) [Marinobacter sp. ELB17]
 gi|126626549|gb|EAZ97208.1| diguanylate cyclase (GGDEF domain) [Marinobacter sp. ELB17]
          Length = 417

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 76/176 (43%), Gaps = 11/176 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           +  +L        + S  D L+ + N       L            + SI+  DID FK 
Sbjct: 234 VQAQLENQNRMFKRQSITDALTEIYNRLKLDEDLSYAIKRSKRTKSEFSIILLDIDNFKL 293

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND+FGH VGD+V+   +  LV        VGR GGEEF      +  Q    LA  +RK
Sbjct: 294 VNDHFGHLVGDEVLKSFASLLVSSIRKSDIVGRWGGEEFLIICPDTDLQGCENLAEQIRK 353

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I   +          +  S G+A     E   T+I R D+ALY AKK GRNRV  
Sbjct: 354 RIAEHEFP----EKRVLNASLGVAVHQQDENADTMIARVDKALYRAKKHGRNRVEV 405


>gi|156741149|ref|YP_001431278.1| PAS/PAC sensor-containing diguanylate cyclase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232477|gb|ABU57260.1| diguanylate cyclase with PAS/PAC sensor [Roseiflexus castenholzii
           DSM 13941]
          Length = 325

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 85/169 (50%), Gaps = 8/169 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
                R+ +L+ +D L+G+ N           +  L  Y     ++  DID+FK IND F
Sbjct: 128 LEEIERLRELALLDPLTGIGNRRFIESNTHSRLEELRRYGWPFGVILADIDHFKAINDTF 187

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD V+  ++  L         VGR GGEEFA  A   S     +LA  LR ++E S
Sbjct: 188 GHLVGDDVLKMVAHTLAHNVRAFDAVGRWGGEEFAIVAQNVSAGMLLVLAERLRALVEQS 247

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + I +  ++H+TIS G A     +    ++ RAD  LY +K++GRN V
Sbjct: 248 TLFIGA-RNVHVTISLGAAIAHPDDTPLGLLDRADHLLYQSKQNGRNCV 295


>gi|34498715|ref|NP_902930.1| hypothetical protein CV_3260 [Chromobacterium violaceum ATCC 12472]
 gi|34104566|gb|AAQ60924.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 825

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 84/195 (43%), Gaps = 19/195 (9%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           +  S +  +  +  ++  L++ D L+ L N       +           + ++++  D+D
Sbjct: 364 LVFSDISSVLAAQEQLDYLAKHDPLTNLCNRRMLQDRMEYELAQAMRRQKMMAVLLIDLD 423

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-----LGSSEQEA 192
           +FK IND+ GH  GD+++A ++ +L         V RLGG+EF          G  +   
Sbjct: 424 HFKTINDSLGHGHGDQLLATIATRLQGSVRASDTVARLGGDEFCIVLGDIESPGDVDLMG 483

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
             L   L + +   Q+        ++T S GI+        +  ++  ADQA+Y AK +G
Sbjct: 484 QKLLQRLAEPVRLEQM------VCYVTGSIGISMAPTDGMGVDELLRNADQAMYGAKHAG 537

Query: 252 RNRVVCFSDIENNTC 266
           RNR   F+       
Sbjct: 538 RNRYCFFAPAMQKAA 552


>gi|241766173|ref|ZP_04764078.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
 gi|241363778|gb|EER59127.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
          Length = 386

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 9/167 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHP 149
             ++++ +  D L+GL N     ++L    +        L+++  D+D+FK IND  GH 
Sbjct: 199 QAQLTEQANRDPLTGLYNRRYLNTALPRELDASAGAGLPLAVLLMDLDHFKLINDRLGHA 258

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  L+          R GGEEF     G +   A   A   R+ + + Q  
Sbjct: 259 AGDDVLCQVAALLLEGTRANDICCRYGGEEFLLVLPGMALDAALARAQAFRQKVADRQW- 317

Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + G  + +T+S G+A         + +I RAD+ALY AK  GRNRV
Sbjct: 318 CADGQPVAVTLSVGVACTLGAALSPAALIDRADRALYQAKAEGRNRV 364


>gi|89902336|ref|YP_524807.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Rhodoferax ferrireducens T118]
 gi|89347073|gb|ABD71276.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 658

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 10/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           + L +L  S   +  L+  D L+ L N    +S L             L+++  D+D FK
Sbjct: 215 TDLSKLRSSQLELDFLAHHDPLTRLPNRLLLLSRLQHGIELAQRDGTHLALLMLDLDRFK 274

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND+FGH VGD+++  ++ +LV    T   VGR GG+EF+      +  ++AA +AND+
Sbjct: 275 DINDSFGHLVGDELLQLVATRLVKQVRTIDTVGRFGGDEFSVLMEDVAGAEQAARVANDI 334

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
            +++      +SSG  + I  S GI+           ++ +AD ALY AK  GR R   F
Sbjct: 335 IRVLSE-PYGLSSGVEVRIGASVGISIYPDNGLTPELMLQQADSALYQAKIEGRGRFAYF 393

Query: 259 SDIENNTC 266
           S+      
Sbjct: 394 SESLTQAA 401


>gi|124266627|ref|YP_001020631.1| diguanylate cyclase/phosphodiesterase [Methylibium petroleiphilum
           PM1]
 gi|124259402|gb|ABM94396.1| diguanylate cyclase/phosphodiesterase [Methylibium petroleiphilum
           PM1]
          Length = 716

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 60/284 (21%), Positives = 112/284 (39%), Gaps = 35/284 (12%)

Query: 17  KNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI--- 73
           +    +S   +    ++   + I+ V +       +   +    L+ I  ++L L++   
Sbjct: 160 RRHAGWSALAYQCAAAVVMGLAISGVHYSGMAAAGFPEGSACLSLDGINGDSLVLIVSVA 219

Query: 74  --ISITISLLLGYISGSIL--------------KELFISYNRISQLSRIDCLSGLLNHSA 117
             + +TI+L+       +               + L  + + +S+L+  D L+GL N S 
Sbjct: 220 TVLMLTITLVTSVFDRRMQATADGLSQSLQQANERLQSANDELSRLAYQDALTGLPNRSY 279

Query: 118 FISSLGSYNEK---------------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           F S L     +               L+++F D+D FK IND++GH  GD V+  ++ +L
Sbjct: 280 FESRLSQAVARIERLRELPTPSASAGLAVLFIDLDGFKPINDSYGHAHGDLVLQAVAVRL 339

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                    + RLGG+EF       S     I     R +    +  +  G  +H++ S 
Sbjct: 340 REAVRAADTLARLGGDEFIVLVEDVSCAGDCIHVAK-RALASMGEPLVVVGQPVHLSCSI 398

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           G+A          +I  AD A+Y AK+ G +    +    N   
Sbjct: 399 GVAMYPDAGDARRLIAHADAAMYEAKRGGGSTYAVYESAMNQGA 442


>gi|330830020|ref|YP_004392972.1| PAS:GGDEF domain-containing protein [Aeromonas veronii B565]
 gi|328805156|gb|AEB50355.1| PAS:GGDEF domain protein [Aeromonas veronii B565]
          Length = 650

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 6/187 (3%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFK 140
            ++   + +  +       L+  D L+GLLN    + SL +Y    E+ ++VF D+D FK
Sbjct: 198 LLTMRDITDRKLEELEHRHLAWHDSLTGLLNRYGLMKSLEAYCGLGERFALVFMDLDNFK 257

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILANDL 199
            +NDN+GH  GD+++  ++ +L  +    + + RLGG+EF A    G+    A  +A+ +
Sbjct: 258 LVNDNYGHKAGDRLLERVAGRLKQICPRDVELARLGGDEFTALVPLGNQGDRAQEVADQM 317

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
              +    + +S  P + I  S GIA      +    +I RAD A+Y AK+ GR R   F
Sbjct: 318 LSQM-TKPLQLSGLPEVTIGGSIGIAIYPDDADDGDNLITRADMAMYQAKQMGRLRWQRF 376

Query: 259 SDIENNT 265
           +     T
Sbjct: 377 TPSMQQT 383


>gi|325981579|ref|YP_004293981.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas sp. AL212]
 gi|325531098|gb|ADZ25819.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas sp. AL212]
          Length = 1029

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 10/190 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
           +I   I +E   +  ++  L+  D L+GL N   F   L            K ++++FD+
Sbjct: 592 WIYEDITQERQTA-QQLLYLAERDPLTGLYNRHRFQEQLESLIANCLRSRGKFALLYFDL 650

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK IND +GH  GD V+   + ++  +        RLGG+EFA  +    +++  +L 
Sbjct: 651 DDFKYINDTYGHSAGDTVLVRAAGEISSIIRQIEIFARLGGDEFAILSSIQPDEDINVLP 710

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
           + +   I +  +    G +I +T S G+A    H E    +I  AD A+Y AK  G+N  
Sbjct: 711 SRIITAISSIPLRFH-GRNIRLTSSLGVAIFPEHGETTEDLIAHADTAMYQAKTQGKNTW 769

Query: 256 VCFSDIENNT 265
             +    +++
Sbjct: 770 AIYDSTRDDS 779


>gi|302879055|ref|YP_003847619.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
           capsiferriformans ES-2]
 gi|302581844|gb|ADL55855.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
           capsiferriformans ES-2]
          Length = 574

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 27/222 (12%)

Query: 65  LVENLSLVIISITISLLL------GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           L +N     I+++IS  +         +   + E      ++ QL+  D L+ L N   F
Sbjct: 350 LHKNGEEFPIALSISAFMYKNHWHALGTIRDITERKQMEEQVRQLAFYDALTNLPNRRLF 409

Query: 119 ISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L          N   +++F D+D FK +ND +GH  GD ++   +++L         
Sbjct: 410 NDRLKQSMAASRRNNTYGAVLFLDLDNFKPLNDTYGHNAGDLLLIEAAERLKQCAREMDT 469

Query: 172 VGRLGGEEFAAAALG------SSEQEAAILANDLRKIIENSQINISSGPS-------IHI 218
           V R GG+EF             S   A+++A  +R  +    +               H 
Sbjct: 470 VARFGGDEFVMILNDLGAHITPSAALASLVAEKIRISLSAPYLLEVKQEEQPDRVVVHHC 529

Query: 219 TISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           T S GIA    H +  + ++ RAD+A+Y AK +GRN++  + 
Sbjct: 530 TASIGIALFINHDDKPNEVMKRADEAMYHAKLAGRNQIRLYE 571


>gi|158520662|ref|YP_001528532.1| serine/threonine protein kinase [Desulfococcus oleovorans Hxd3]
 gi|158509488|gb|ABW66455.1| serine/threonine protein kinase [Desulfococcus oleovorans Hxd3]
          Length = 1644

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 8/169 (4%)

Query: 99   RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
             +S+ +  D L+GL NH  F + L            +LS++  DID+FK+ ND +GH  G
Sbjct: 1476 ELSRKAVTDGLTGLYNHDYFQNMLQQELLLAKRKGRELSMIMIDIDHFKRFNDTWGHQAG 1535

Query: 152  DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            D V+  ++ ++     +   V R GGEE A     +  + A  LA  +R+ +E  ++  +
Sbjct: 1536 DMVLREVAAEIRESCRSSDVVARYGGEEMALLLHETGPEAAFALAEKIRRRVEALRVEHA 1595

Query: 212  SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             G  + +TIS G+A    H +    ++ +AD ALY +K  GRN V   +
Sbjct: 1596 PGEYLQVTISLGVAGFPIHAKNKKPLVKKADDALYSSKAGGRNMVTLAT 1644


>gi|114562205|ref|YP_749718.1| diguanylate cyclase/phosphodiesterase [Shewanella frigidimarina NCIMB
            400]
 gi|114333498|gb|ABI70880.1| diguanylate cyclase/phosphodiesterase [Shewanella frigidimarina NCIMB
            400]
          Length = 1276

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 109/222 (49%), Gaps = 25/222 (11%)

Query: 49   FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
            F F I    +Y   Y L+ + +++I+   I +L G    S +K++      +S+ +  D 
Sbjct: 795  FAFNIKKAWWY---YALIASGTIIIL---IMILFGL---SRIKQMK----ELSRRANFDS 841

Query: 109  LSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
            L+GL N   F   L           ++VF D+D+FK++ND+ GH VGD++I  +  +L  
Sbjct: 842  LTGLANRFHFNQQLSLLMSNPYNTAAVVFIDLDHFKEVNDSMGHDVGDELIIQVGKRLQH 901

Query: 165  VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-----HIT 219
                   + RLGG+EFA       EQ AA +  DL  IIE  +  ++ G  I     + +
Sbjct: 902  CLSQQDVLARLGGDEFALIIPY--EQVAADVNRDLVNIIERVRQTLNKGYQINQYWLNSS 959

Query: 220  ISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
             S G+A          T++  AD A+Y AK++GRN    F++
Sbjct: 960  ASIGVACFPDDGKDAKTLLKHADTAMYAAKQNGRNGSYFFNE 1001


>gi|304408868|ref|ZP_07390489.1| diguanylate cyclase with extracellular sensor [Shewanella baltica
           OS183]
 gi|307302871|ref|ZP_07582626.1| diguanylate cyclase with extracellular sensor [Shewanella baltica
           BA175]
 gi|304352689|gb|EFM17086.1| diguanylate cyclase with extracellular sensor [Shewanella baltica
           OS183]
 gi|306913231|gb|EFN43653.1| diguanylate cyclase with extracellular sensor [Shewanella baltica
           BA175]
          Length = 936

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 91/208 (43%), Gaps = 12/208 (5%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
              L YI+   + L  + + + LL+       + +  ++  R+  ++  D L+ L N + 
Sbjct: 730 LQWLRYIVFGVIILCSVMVAV-LLVNRRLNREITQRLVAEKRLLHVANHDALTQLPNRAL 788

Query: 118 FISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
               L              +++F D+D FKQIND  GHP+GD+++  ++ +L  V     
Sbjct: 789 LDDRLAQALLSHQREQAHFALLFIDLDGFKQINDQHGHPIGDELLVQVAQKLTKVIRGSD 848

Query: 171 FVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC- 228
            V R GG+EF            A  +A+++ + +  S   +  G S+ I +S G+     
Sbjct: 849 TVARFGGDEFVILLNRVQDLDAATQVADNILQAL--SSPLLIQGVSVSIAVSMGVVIYPR 906

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256
             +    ++ +ADQ +Y AK  G     
Sbjct: 907 DGDTAIGLLKKADQLMYQAKSCGGRCYR 934


>gi|222149543|ref|YP_002550500.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221736525|gb|ACM37488.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 242

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 68/212 (32%), Positives = 106/212 (50%), Gaps = 1/212 (0%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
           +A  F + +GL P   ++ + +      ++   ++   G      ++ L I+  +   LS
Sbjct: 14  VALPFCWVLGLVPMPIIDAVKLSVAMSWLLGSFVATFTGVFVAREIRSLAIAKAKYEHLS 73

Query: 105 RIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           RID LSGLLN  AF  +L       S+   D+D+FK IND +GH  GD VI  ++D L  
Sbjct: 74  RIDGLSGLLNRRAFSEALDQTEGNASLAIADLDWFKSINDAYGHSAGDFVIRAVADILCH 133

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
               P    RLGGEEF     G + Q+     + +R+ I + +++   G  I  +IS G+
Sbjct: 134 FANDPHVTARLGGEEFGLIIQGDTIQQRFERIDMIRRSISDLRLHF-DGRLISTSISIGV 192

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           AE   +     +   AD+ALY AK +GRN +V
Sbjct: 193 AEISPERRPEVVYAAADRALYRAKANGRNCIV 224


>gi|220934671|ref|YP_002513570.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995981|gb|ACL72583.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
          Length = 854

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 10/172 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFK 140
           ++ +++      +   +  D L+ L N       L    +       +L+++  D+D FK
Sbjct: 399 AMQRQIHHRQKALEHQALHDALTRLPNRVLLNDRLEQAIQLMERNGGQLAVLLLDLDRFK 458

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND  GHPVGDK++  ++ +L         V RLGG+EFA  AL +    A   A  + 
Sbjct: 459 EVNDALGHPVGDKLLQQVARRLRTSLRGSDTVARLGGDEFAILALNTDGASALEFAGKIH 518

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
           + I  S +      ++++  S GIA    H    S+++ RAD A+Y AK  G
Sbjct: 519 QAI--SGVFTIEHQNVYVGTSIGIALYPEHGNDASSLMRRADIAMYAAKHQG 568


>gi|158333716|ref|YP_001514888.1| diguanylate cyclase/phosphodiesterase [Acaryochloris marina
           MBIC11017]
 gi|158303957|gb|ABW25574.1| diguanylate cyclase/phosphodiesterase, putative [Acaryochloris
           marina MBIC11017]
          Length = 886

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 12/181 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQIN 143
           E   +  +   L+  D L+G  N + F+  L    ++         +++F D+D FK +N
Sbjct: 439 ERQRAEEQFKHLALHDPLTGFPNRAFFMEQLERAVKQTQRHSQYLFAVLFIDLDRFKIVN 498

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKI 202
           D+ GH VGD+++  ++ QL  +      V RLGG+EF        E  +A  +A+ + + 
Sbjct: 499 DSLGHEVGDQLLGAIAHQLHSLVRATDIVARLGGDEFVILLEPIEEVNDAVRVADRIVQE 558

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           + ++ I++S+   + I+ S GIA         + I+  AD A+Y AK  G+     F++ 
Sbjct: 559 L-SAPIDLSN-RQVFISASVGIALSSPDYSQATDILRDADIAMYRAKNRGKACFEIFNER 616

Query: 262 E 262
            
Sbjct: 617 M 617


>gi|114778033|ref|ZP_01452933.1| Hypothetical 918 kDa protein Y4LL [Mariprofundus ferrooxydans PV-1]
 gi|114551639|gb|EAU54192.1| Hypothetical 918 kDa protein Y4LL [Mariprofundus ferrooxydans PV-1]
          Length = 531

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 88/184 (47%), Gaps = 11/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            + E  +  +++   +  D L+GL N S F       I++       L+++F D+D FK 
Sbjct: 343 DITERKLMEDKVEYQAFYDTLTGLANRSLFHNTLHQAIANAKREKCSLALIFVDLDKFKP 402

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLR 200
           +ND FGH +GD ++  ++D++           R+GG+EF          + A  +A  +R
Sbjct: 403 VNDQFGHGIGDLLLKAVADRITGCLRESDSAARIGGDEFVVLLPSVGVIKNALKIAEKVR 462

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              E +Q     G +++I+ S G+A    H +    +I RAD A+Y AK  G+N V  + 
Sbjct: 463 H--ELNQPFEIEGLTLNISSSNGVALYPDHADDAEQLIKRADIAMYYAKTEGKNSVKAYR 520

Query: 260 DIEN 263
              +
Sbjct: 521 PEMS 524


>gi|332527064|ref|ZP_08403146.1| hypothetical protein RBXJA2T_14166 [Rubrivivax benzoatilyticus JA2]
 gi|332111496|gb|EGJ11479.1| hypothetical protein RBXJA2T_14166 [Rubrivivax benzoatilyticus JA2]
          Length = 265

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 12/173 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           L++L ++   +   +  D L+GL N    +  L    E+        ++   D+D+FK +
Sbjct: 95  LRDLSLA---LRDAAMRDPLTGLGNRRFLMERLREEGERTQRLGRGFAVAIMDVDHFKAV 151

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD V+  ++  +          GR GGEEF      +  + A  +   +R+ 
Sbjct: 152 NDAHGHETGDSVLQVIAQAVESGVRRYDHCGRWGGEEFLMLLPETPLEAARAIVERIRQA 211

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           I +  I+      + +T S G+AE    E  S  I RADQALY AK +GRNRV
Sbjct: 212 IAD--IDHVGEVRVSLTASFGLAEHRDGEDFSATINRADQALYAAKAAGRNRV 262


>gi|330955584|gb|EGH55844.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 202

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
              + E     + + +L+  D L+   N   F                 L+ +  DID F
Sbjct: 24  AEDITEKKHLEDELQRLATTDVLTQSSNRRHFFECAQREFELARLNGTPLAFLLLDIDDF 83

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND +GH  GD V+  +++            GR+GGEEFAA   G +   A  +A  L
Sbjct: 84  KLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCAPDMAMQIAERL 143

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           ++ I+      S G +  IT S G+      +P + T+  RAD A+Y AK+ G+N++V 
Sbjct: 144 QREIQRQNFQ-SGGTTFSITASQGLTNLGADDPSLETLYGRADAAMYQAKRQGKNQIVL 201


>gi|239905372|ref|YP_002952111.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
 gi|239795236|dbj|BAH74225.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
          Length = 406

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 14/195 (7%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------L 122
           S+ I +     +L   S  +  EL  + + + Q ++ D L+GL N   F+         L
Sbjct: 204 SMWIFAFLTFCVLSMTSSRVEAELREARDALRQQAQTDALTGLSNRRHFLEQAQAVLEDL 263

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
            ++  + S++  D+D+FK+IND  GH  GD  +   +  L         +GRLGGEEF  
Sbjct: 264 EAHGGRASLIMLDLDHFKRINDVHGHQAGDLALQEAARHLRAALRDGDVIGRLGGEEFGV 323

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
              G    EA  +A  LR+ +  S+        + +T S G+A       + +++ +AD+
Sbjct: 324 LLPGLEAGEALAVARQLRRAVAASRPG-----GLRVTASFGLA--DGALRLDSLLAQADE 376

Query: 243 ALYVAKKSGRNRVVC 257
            LY AK++GR+R+  
Sbjct: 377 YLYAAKEAGRDRIAW 391


>gi|254507211|ref|ZP_05119348.1| ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219549921|gb|EED26909.1| ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 338

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 5/172 (2%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           ++ L      + Q +  D L+ L N  +F   I +L    +K+ +V  DID+FK  NDN+
Sbjct: 165 IQRLKTELAEVQQDALFDSLTSLYNRRSFDNDIKTLCQTGQKICLVLADIDHFKSYNDNY 224

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD VI  ++ +L +     +   R GGEEFA        + A   A+ LR+ IE  
Sbjct: 225 GHLFGDAVIKGIAKRLHINARDGVHAYRFGGEEFALIVPNKQLRIARQYADSLRRSIEKL 284

Query: 207 QINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            I      S+  +IT S G+AE    E   ++I RAD+ LY AK+ GRNRV+
Sbjct: 285 SIKDKRSGSLVANITASFGVAELEENESAESLIERADKLLYEAKQLGRNRVM 336


>gi|153000828|ref|YP_001366509.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|151365446|gb|ABS08446.1| diguanylate cyclase [Shewanella baltica OS185]
          Length = 928

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 91/208 (43%), Gaps = 12/208 (5%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
              L YI+   + L  + + + LL+       + +  ++  R+  ++  D L+ L N + 
Sbjct: 722 LLWLRYIVFGVIILCSVMVAV-LLVNRRLNREITQRLVAEKRLLHVANHDALTQLPNRAL 780

Query: 118 FISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
               L              +++F D+D FKQIND  GHP+GD+++  ++ +L  V     
Sbjct: 781 LDDRLAQALLSHQREQAHFALLFIDLDGFKQINDQHGHPIGDELLVQVARKLTKVIRGSD 840

Query: 171 FVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC- 228
            V R GG+EF            A  +A+++ + +  S   +  G S+ I +S G+     
Sbjct: 841 TVARFGGDEFVILLNRVQDLDAATQVADNILQAL--SSPLLIQGVSVSIAVSMGVVIYPR 898

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256
             +    ++ +ADQ +Y AK  G     
Sbjct: 899 DGDTAIGLLKKADQLMYQAKSCGGRCYR 926


>gi|91223827|ref|ZP_01259091.1| hypothetical protein V12G01_18822 [Vibrio alginolyticus 12G01]
 gi|91191319|gb|EAS77584.1| hypothetical protein V12G01_18822 [Vibrio alginolyticus 12G01]
          Length = 506

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 8/169 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++   +  D ++GLLN       LG     N   S++  DID+FK +NDN+GH VGD +
Sbjct: 342 DKLQLDTLTDSMTGLLNRRGLDKVLGLFKQENTAFSVLALDIDHFKSVNDNYGHDVGDNL 401

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   +  +     +   + R GGEEF      +    A  +A  +R  +E     +    
Sbjct: 402 LREFAQLMKDQARSNDHLCRSGGEEFMMFLEKTDVNHAMDVAERIRHNVEQHDFQVVG-- 459

Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              +T+S G++    +  PI  ++  AD ALY AK +GRNR     D +
Sbjct: 460 --KVTVSLGVSHWKGNDTPIEAVMKDADNALYKAKHNGRNRTELGDDAQ 506


>gi|114320172|ref|YP_741855.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226566|gb|ABI56365.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 295

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 59/188 (31%), Positives = 89/188 (47%), Gaps = 13/188 (6%)

Query: 82  LGYISGSILKELFISY---NRISQLSRIDCLSGLLNHSAFIS----SLGSYNE----KLS 130
           L  ++ ++ KE+         + +L+ +D L+G+ +    +      L          L+
Sbjct: 99  LRTLNEALEKEVQARETLAEELHRLAMMDDLTGVYSRRQVLEVGERELARRRRQGLTPLT 158

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D+FK+IND +GH  GD V+   S+ L         VGRLGGEEF A       Q
Sbjct: 159 LLMMDLDHFKRINDKYGHAAGDTVLVAFSEVLRRNLRESDAVGRLGGEEFLAVLPDVDLQ 218

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKK 249
               LA  +R  I   +I      +I +T+S G+A      E +   I RAD ALY AK 
Sbjct: 219 GGLALAERIRSEIAELRIPWQE-EAIRLTVSIGVAGILAVHESLDDTIMRADDALYQAKV 277

Query: 250 SGRNRVVC 257
           +GRNRV  
Sbjct: 278 AGRNRVTV 285


>gi|323947690|gb|EGB43693.1| GGDEF domain-containing protein [Escherichia coli H120]
          Length = 269

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 97  DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 155

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 156 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 215

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 216 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 266


>gi|311108782|ref|YP_003981635.1| signaling protein [Achromobacter xylosoxidans A8]
 gi|310763471|gb|ADP18920.1| signaling protein [Achromobacter xylosoxidans A8]
          Length = 687

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 114/273 (41%), Gaps = 19/273 (6%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYI------GLTPFYGL 61
           +++  L H     ++S     +   I       T +  A      I      G++  +  
Sbjct: 159 WITYRLRHGGPRVAWSRPLAAVIMGIAIVGMHYTGMAAAGFPAGSICMAANSGISAGWLA 218

Query: 62  EYILVENLSLVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
             +    LS++ I++ +++L   L   + ++   L  +   + QL+  D L+ L N    
Sbjct: 219 IAVTAVTLSVLAIALLVAVLDNRLEARTSALASSLAEANEELVQLALHDTLTKLPNRILL 278

Query: 119 ISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L    E         +++FFD+D FK +ND +GH  GD ++  L+ ++ +   T   
Sbjct: 279 EDRLEQAIESATRRKGYFAVLFFDLDGFKAVNDAYGHHTGDALLIDLAQRIRLTLRTQDT 338

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           V RLGG+EF   +      +AA +A+ L   I   +     G  + +T S GIA    + 
Sbjct: 339 VARLGGDEFIVLSEVVEPTDAANVADRLIDAIA--RPVTVYGHEVMVTSSVGIAIYPNNG 396

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +    ++  AD A+Y AK+ G      F    N
Sbjct: 397 QDTHALLTNADAAMYHAKRLGGTGYSFFEPSMN 429


>gi|77404754|ref|YP_345327.1| diguanylate cyclase/phosphodiesterase with phytochrome (GAF) sensor
           [Rhodobacter sphaeroides 2.4.1]
 gi|77390404|gb|ABA81586.1| diguanylate cyclase/phosphodiesterase with Phytochrome (GAF) sensor
           [Rhodobacter sphaeroides 2.4.1]
          Length = 931

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 90/198 (45%), Gaps = 6/198 (3%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           E +   +L       + +  LG    + + +   +   +++L   D L+GL N S     
Sbjct: 470 ETVTGRSLPWTSAERSCARELGEAIAAEMAQRTRA--ELARLRHYDPLTGLANRSYLQER 527

Query: 122 LGSYNEKLS-IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           L    +  + ++F D+D FK +ND+ GH VGD ++  ++  LV        V RLGG+EF
Sbjct: 528 LAQDGQPAAALLFIDLDRFKAVNDSMGHSVGDGLLIEVARSLVATVRPHDLVVRLGGDEF 587

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                         LA  LR+ +E  Q    +G   HI+ S GIA       +  ++  A
Sbjct: 588 VVLCHRLDAAGIVSLAERLRQALE--QPFEVAGRKCHISASIGIAMADSIGDLD-LVRAA 644

Query: 241 DQALYVAKKSGRNRVVCF 258
           D A+Y AKK+G NR   F
Sbjct: 645 DIAMYAAKKNGGNRGELF 662


>gi|296102184|ref|YP_003612330.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295056643|gb|ADF61381.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 410

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 75/174 (43%), Gaps = 11/174 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQ 141
            + E       +   +  D ++GLLN   F       N       ++ S++  D D+FK 
Sbjct: 238 DITEQKRLELELEHAALQDAMTGLLNRRQFYIIAEQMNLTHLPLQQQFSLLLVDTDHFKN 297

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH  GD+V+  LS  L        FV R GGEEF      +S   A  +A  +R 
Sbjct: 298 INDVFGHLKGDEVLIALSRTLEACSRKEDFVFRWGGEEFVILLPRTSLDTALQIAETIRA 357

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +    I          T+S G+A     E I  +  R D ALY AK  GRN+V
Sbjct: 358 AVARISIPGLP----RFTVSIGVARHNQDESIDDLFKRVDDALYRAKNDGRNKV 407


>gi|237729704|ref|ZP_04560185.1| GGDEF family protein [Citrobacter sp. 30_2]
 gi|226908310|gb|EEH94228.1| GGDEF family protein [Citrobacter sp. 30_2]
          Length = 730

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 12/183 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L+ +     ++  ++  D L+GL N  +F  +L           +  +++  D+D FK +
Sbjct: 286 LQRMHEMSQKMEHMAHHDSLTGLPNRVSFGQALDKRVSEIHQDEKPFNLLLIDLDNFKPV 345

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSEQEAAILANDLR 200
           ND FGH  GD+++  ++ +L ++ G      RLGG+EFA       ++ +EA  LA  + 
Sbjct: 346 NDTFGHKAGDELLISVAQRLQLLLGPNDIAARLGGDEFAILQHVSDNAIKEANRLAKRII 405

Query: 201 KIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +  S     S  +  I+ S GI    +     ST++  AD A+Y +K  GR     F 
Sbjct: 406 RAL--STPFTWSTHTFSISCSIGITTAPYQGNNTSTLMINADLAMYASKHHGRGCFHFFE 463

Query: 260 DIE 262
           D  
Sbjct: 464 DGM 466


>gi|329904066|ref|ZP_08273661.1| hypothetical protein, Putative conserved domain [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327548150|gb|EGF32864.1| hypothetical protein, Putative conserved domain [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 364

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 14/179 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           E  I+  R+ ++   D L+G+ N       L             LS ++ DID+FK+IND
Sbjct: 183 ENVINNERLKRIGLTDSLTGVNNRRYLERRLQEEIGRTRRQEFPLSCMYIDIDHFKKIND 242

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH  GD+V+  ++ ++         +GR GGEEF    + +    A ++A  +R  I 
Sbjct: 243 SAGHQGGDEVLQQVALRIKAELRLSDALGRFGGEEFVVLLIDAGLSHALVVAERIRASIA 302

Query: 205 NSQINISSGPSIHITISAGIAERCHKE-------PISTIIYRADQALYVAKKSGRNRVV 256
           N  I +S G ++  T+S G+ E    +           ++ RAD+ALY AK+SGRNRV+
Sbjct: 303 NQPIVLSDGAALTATVSIGVTELSAADRVHPVEKTALQLVARADEALYRAKQSGRNRVI 361


>gi|304570498|ref|YP_002208.2| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 352

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 60/182 (32%), Positives = 101/182 (55%), Gaps = 9/182 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           S L  + +  +R+ +L+ +D ++GL  H  F + L    ++       L+++F D+D FK
Sbjct: 170 STLAGIAVENSRLYELATVDMMTGLKVHHYFQTKLKEEMDRCRKKKSYLTLLFTDVDNFK 229

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           + ND  GH  GD+V+  ++ QL+   G      R GGEEF     G+  +    +   +R
Sbjct: 230 KFNDTHGHQAGDQVLIEVAKQLIRQAGKHDIPARYGGEEFCLVMPGADLERGYEMGEMIR 289

Query: 201 KIIENSQI-NISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           K +E+S + N + GP + +T+S G++E   K+     +I RAD+ALY AK SG+NR VC+
Sbjct: 290 KAVESSSVKNPNGGPDLKVTLSVGVSEFWPKDKNNRDLIERADKALYTAKNSGKNRTVCY 349

Query: 259 SD 260
            +
Sbjct: 350 KE 351


>gi|157960251|ref|YP_001500285.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Shewanella pealeana ATCC 700345]
 gi|157845251|gb|ABV85750.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella pealeana ATCC 700345]
          Length = 1492

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 11/191 (5%)

Query: 85   ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDID 137
            +  S + E   +   + +L+  D L+GL N S F S L             L+++F D+D
Sbjct: 1036 VVFSDITERKRTEAELRRLANFDILTGLPNRSLFSSKLAQSVYQAEKEGGNLALLFLDLD 1095

Query: 138  YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILA 196
             FK +ND++GH +GD ++   S++L  +      + R GG+EF      + +      L 
Sbjct: 1096 RFKHVNDSYGHSMGDALLVEASNRLQSLVADENVLCRFGGDEFVILLRDTPTIDTVNYLC 1155

Query: 197  NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
              L   IE  +  +  G    I+ S G++           +I  AD A+Y AK+ G+   
Sbjct: 1156 EQLLASIE--KPFVLYGREFFISTSIGVSLWPEDAKQPEVLIKNADLAMYHAKEEGKGHF 1213

Query: 256  VCFSDIENNTC 266
              +S+  N   
Sbjct: 1214 KYYSEERNAEA 1224


>gi|170734764|ref|YP_001773878.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3]
 gi|169820802|gb|ACA95383.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3]
          Length = 502

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 92/185 (49%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFD 135
           ++    L++ F     ++ L+R D L+GL N  A  ++L    E+L        S++F D
Sbjct: 312 WLLAFALRDNFRKQTLLTDLTRTDPLTGLRNRRALDTALADEWERLQRGSGGSLSVLFID 371

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
            D+FKQ ND  GH  GD  + FL++ +            R GGEEF A    + E  AA 
Sbjct: 372 ADHFKQYNDQHGHAQGDTALRFLAECIRAHTRRRGDLAARYGGEEFVAVLPDTDENGAAQ 431

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGR 252
           +A  +R+ +E +++   +      T+S G A   R     +  + ++AD ALY AK+ GR
Sbjct: 432 VAEAIRREVEGNRLVGFAETVPPFTVSIGCATGRRARHASMFALSHQADMALYRAKREGR 491

Query: 253 NRVVC 257
           NRV C
Sbjct: 492 NRVCC 496


>gi|303238268|ref|ZP_07324804.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Acetivibrio cellulolyticus CD2]
 gi|302594314|gb|EFL64026.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Acetivibrio cellulolyticus CD2]
          Length = 516

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 71/268 (26%), Positives = 120/268 (44%), Gaps = 16/268 (5%)

Query: 3   RSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLE 62
           +S K  L  +        +F    F ++  +F ++F   ++  A +    IG+   +   
Sbjct: 53  QSFKQILGQFQIFAAIYLAFRFRFFGLFIGLFINLFEIVLLSYAYMAHPMIGILAGF--- 109

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
                +  L I+S  +  +L        +EL    +++  LS  D L+G  NH  F S+L
Sbjct: 110 ----TSKVLTILSSIVMAILSNKQEKQKEELQEQKSKLETLSVTDDLTGAYNHRFFNSTL 165

Query: 123 GSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            +  EKL       +++  DID FK  ND  GH  GD ++   +  L    G    V R 
Sbjct: 166 DNEIEKLKLTRDCIALIMIDIDNFKMCNDISGHDYGDDILKGTASILKEAAGDGNTVCRY 225

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCH-KEPI 233
           GG+EFA     S+ Q A+ +A+ +R + E  + N     S   IT+S G++      +  
Sbjct: 226 GGDEFAIILPSSNLQSASQIAHRIRNLFEKQKTNYFEENSYSNITLSMGLSVYPDMADNK 285

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDI 261
             +I +AD ALY +K  G++ +  + DI
Sbjct: 286 DELINQADMALYHSKNLGKDNIHFYQDI 313


>gi|291615020|ref|YP_003525177.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans
           lithotrophicus ES-1]
 gi|291585132|gb|ADE12790.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans
           lithotrophicus ES-1]
          Length = 961

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 92/206 (44%), Gaps = 12/206 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  E LS+ +I      +  +++  S +         +S ++  D L+G+ N       L
Sbjct: 755 IYAELLSISVICDDAGNVQRHVAVFSDITYFKEHEAELSHVANHDALTGIPNRRLLSDRL 814

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                      + L+I + D+D FK +ND +GH  GD ++  ++ +L  V      + RL
Sbjct: 815 GQAIAHAQRSGKTLAICYIDLDGFKDVNDRYGHETGDMLLVDITRRLQDVLRAGDTLARL 874

Query: 176 GGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF       S++ E   +   + + I           SI ++ S G+       E  
Sbjct: 875 GGDEFVVLFNDLSQELECIQVLERIVQTIA--MPVWFEERSIAVSASVGVTCYPADDEEG 932

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
            T++  ADQA+YVAKK+G+NR   + 
Sbjct: 933 DTLLRHADQAMYVAKKAGKNRFHLYD 958


>gi|254481121|ref|ZP_05094367.1| GGDEF domain protein [marine gamma proteobacterium HTCC2148]
 gi|214038916|gb|EEB79577.1| GGDEF domain protein [marine gamma proteobacterium HTCC2148]
          Length = 400

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 77/267 (28%), Positives = 122/267 (45%), Gaps = 38/267 (14%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV---------------- 72
           + FS+    +    +F A   + +  L  ++   Y LV  LSL+                
Sbjct: 132 VGFSVIIREYFLVYVFTALWPIAWWSLIHYWEQPYNLVIGLSLLAFCAVLVVVCNRVYMS 191

Query: 73  ---IISI-----TISLLLGYISGSIL---KELFISYNRISQLSRIDCLSGLLNHSAF--- 118
              +IS+     T+S  LG ++ S+    K+L  +  +++ L+ ID L+GL N       
Sbjct: 192 FRNMISLNWERETMSQELGDLTASLRDRNKQLRDARRQLTDLANIDELTGLGNRRLVNTA 251

Query: 119 ----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVG 173
               I+        LS+V  D+DYFK  ND +GHP GD V+  L++ +          V 
Sbjct: 252 LKEEINRARRSGTNLSVVLLDVDYFKNYNDTYGHPAGDTVLQKLANIMTKATSRAGEVVA 311

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIAERCHKEP 232
           R GGEEF     G+S   A   AN L++++E   I   +     + T+S G+        
Sbjct: 312 RYGGEEFILLLPGASHDSAMRTANRLKELVELEAIPHENSSVADVLTVSQGVVTVQPDGD 371

Query: 233 I--STIIYRADQALYVAKKSGRNRVVC 257
           +  S +I RAD+ALY AKK+GR+R+  
Sbjct: 372 MLPSEVISRADKALYEAKKTGRDRISV 398


>gi|94498893|ref|ZP_01305431.1| diguanylate cyclase (GGDEF domain) [Oceanobacter sp. RED65]
 gi|94428525|gb|EAT13497.1| diguanylate cyclase (GGDEF domain) [Oceanobacter sp. RED65]
          Length = 564

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 64/187 (34%), Positives = 92/187 (49%), Gaps = 14/187 (7%)

Query: 81  LLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLS 130
           L G + G + K   EL      +  LS  D L+G+ N                 Y    S
Sbjct: 381 LSGELEGKVAKRTAELEQKNEELRLLSSTDRLTGVYNRMKLEEQIQHEISRAQRYKLDYS 440

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           IV  D+DYFK +ND+FGH VGD+V+   + +L         VGR GGEEF  +   ++  
Sbjct: 441 IVMLDVDYFKNVNDSFGHQVGDRVLKMFAVELQNNVRESDVVGRWGGEEFIISCSCTNAD 500

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
            A  LA  LR+IIE+       G  I  T S G+++   ++ + ++I RAD ALY +K+ 
Sbjct: 501 NAFSLAEKLREIIEHLDF----GSGIACTASFGVSQYQLEDSLESLISRADNALYESKRM 556

Query: 251 GRNRVVC 257
           GRN+V  
Sbjct: 557 GRNKVSV 563


>gi|53805211|ref|YP_113066.1| sensory box protein [Methylococcus capsulatus str. Bath]
 gi|53758972|gb|AAU93263.1| sensory box protein [Methylococcus capsulatus str. Bath]
          Length = 1214

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 90/190 (47%), Gaps = 16/190 (8%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
            S + EL  +  +I QL+  D L+GL N S     L              +++F D+DYF
Sbjct: 764 SSDISELKRTEEKIRQLAYYDSLTGLPNRSLIFERLTQQMKAARREGTYGALLFMDLDYF 823

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS------SEQEAA 193
           K +ND+ GH +GD+++  ++++L           RLGG+EF      +      +  +A 
Sbjct: 824 KTLNDSLGHHMGDRLLVQVAERLKNCLEDEEAAARLGGDEFVVLLAPAKPSASVAAGQAI 883

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252
           + A  +R+++ ++   +      +I++S GIA           ++ +AD A+YVAK  GR
Sbjct: 884 VHARRVRELL-SAPFQLDDYVH-YISVSIGIALFPDGANTAEDVLKQADTAMYVAKNEGR 941

Query: 253 NRVVCFSDIE 262
           + V  +    
Sbjct: 942 DGVRFYESAM 951


>gi|53802334|ref|YP_112869.1| EAL/GGDEF domain-containing protein [Methylococcus capsulatus str.
           Bath]
 gi|53756095|gb|AAU90386.1| EAL/GGDEF domain protein [Methylococcus capsulatus str. Bath]
          Length = 490

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 11/188 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           I+  I +E   +  ++   +  D ++GL N   F   L             + ++F D+D
Sbjct: 39  INAEIRREADKAIEQLDIKAHYDTVTGLPNRQLFCDRLLQALAAHERDGNPVVLLFLDVD 98

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILA 196
            FK IND+ GH VGD+++   ++++         V R+GG+EF     G+      A++A
Sbjct: 99  NFKSINDSLGHLVGDRLLRATAERIRTAVRDGDTVARIGGDEFTILLNGAKDTLNGALVA 158

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +   +   Q  +     I I++S GIA      E +  ++  AD A+Y AK  G+N  
Sbjct: 159 QKILDGLA--QPFVFGAQQIVISVSIGIAVSPADGETMEQLLRNADTAMYHAKSRGKNNY 216

Query: 256 VCFSDIEN 263
             FS   N
Sbjct: 217 QFFSPELN 224


>gi|94267458|ref|ZP_01290885.1| GGDEF:EAL [delta proteobacterium MLMS-1]
 gi|93451999|gb|EAT02704.1| GGDEF:EAL [delta proteobacterium MLMS-1]
          Length = 775

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 66/278 (23%), Positives = 119/278 (42%), Gaps = 16/278 (5%)

Query: 2   TRSLKDFLSIWL-----CHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLT 56
           T  L   L  WL       +   + F PH    ++        A    +A++ + Y    
Sbjct: 236 TPRLPAGLRQWLHSGHDAFDGPTKLFLPHRKERFWGGIIHQPDAAGHDVADLVILYDATA 295

Query: 57  PFYGLEYILVENLSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNH 115
                   ++ NL++  + +   LLL Y ++    +E+  +  ++   +  D L+GL N 
Sbjct: 296 LLGAFRQSVITNLAMAAVLLGALLLLLYGVTRKAEREVEQAMEQLRHQATHDLLTGLPNR 355

Query: 116 SAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
             F   L             ++++  D+D FK +N+NFGH  GD+V+ F++ +L      
Sbjct: 356 ELFQDRLRQATRRAAKEERPVAVLQLDLDNFKAVNNNFGHAAGDEVLRFIARRLQQALAD 415

Query: 169 PMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
              VGRL G+EF        E +E+A +A  +   +E + ++    P+I +  S GIA  
Sbjct: 416 DCTVGRLSGDEFVILLPNIKECRESAEMARQILAALE-TPVSTPHTPNITVGGSVGIACF 474

Query: 228 CHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
                   T++   + A+Y AKK+GR     ++   N 
Sbjct: 475 PDDGKDDKTLLRHVEMAMYQAKKAGRGTYAFYARELNQ 512


>gi|127513928|ref|YP_001095125.1| diguanylate cyclase [Shewanella loihica PV-4]
 gi|126639223|gb|ABO24866.1| diguanylate cyclase [Shewanella loihica PV-4]
          Length = 585

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 92/205 (44%), Gaps = 16/205 (7%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE- 127
           +SL+I  IT+     Y S +I K       R+ QL+  D L+ + N   F     S    
Sbjct: 378 ISLLIAIITLLGFWAYKSWTIQK-------RLKQLAEYDALTHVFNRGHFTQVAQSALTY 430

Query: 128 ------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                  LS + FD+D FKQIND +GH +GD V+  ++              R+GGEEF 
Sbjct: 431 CESSEVDLSYILFDLDNFKQINDKYGHAIGDWVLKKVAKACQAQGRKNDIFARIGGEEFC 490

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRA 240
            A  G   Q A  LA   RK I       ++G    +T S GI +       +  +I  A
Sbjct: 491 IALPGCDLQTAVKLAEACRKAIAGIDCG-ATGHEFEVTASFGITDTQMSGYKLERLINDA 549

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D A+Y +K++GR+R+  F      T
Sbjct: 550 DSAMYQSKETGRDRICIFDPEAKRT 574


>gi|332982919|ref|YP_004464360.1| diguanylate cyclase [Mahella australiensis 50-1 BON]
 gi|332700597|gb|AEE97538.1| diguanylate cyclase [Mahella australiensis 50-1 BON]
          Length = 560

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/182 (31%), Positives = 85/182 (46%), Gaps = 14/182 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL    + + +LS  D L+GL N     + L         Y + LS +  D+D+FK +ND
Sbjct: 378 ELIEKNSLLERLSITDALTGLYNRGYMTNRLAGDLSYSLRYGQPLSCLMMDLDFFKAVND 437

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD V+  L+  + +       V R GGEEF      +    A +L   +R+ + 
Sbjct: 438 MYGHQAGDLVLKQLAQIISMNVRKSDVVIRYGGEEFLVICPNTDGNGAIMLGERIRQAVR 497

Query: 205 NSQINISS-GPSIHITISAGIAERCHKEPIS------TIIYRADQALYVAKKSGRNRVVC 257
               +IS+ G  I +TIS G A     +          II +AD ALY+AK  GR+ V  
Sbjct: 498 EHDFDISNGGKRIRMTISIGAACIEPHDIKDIVQAERDIIAQADSALYMAKGDGRDNVKL 557

Query: 258 FS 259
           F+
Sbjct: 558 FA 559


>gi|330881636|gb|EGH15785.1| PAS:GGDEF protein [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 333

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
              + +     + + +L+  D L+   N   F                 L+ +  DID F
Sbjct: 155 AEDITDKKHLEDELQRLATTDVLTQSSNRRHFFECAQREFELARLNGTPLAFLLLDIDDF 214

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND +GH  GD V+  +++            GR+GGEEFAA   G +   A  +A  L
Sbjct: 215 KLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCAPDMAMQIAERL 274

Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++ I+      S G +  IT S G+         + T+  RAD A+Y AK+ G+N++V 
Sbjct: 275 QREIQRQNFQ-SGGTTFSITASQGLTNLGPEDSSLETLYGRADAAMYQAKRQGKNQIVL 332


>gi|301631717|ref|XP_002944942.1| PREDICTED: hypothetical protein LOC100496669 [Xenopus (Silurana)
           tropicalis]
          Length = 738

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 8/175 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQI 142
           + +L    +R S L+R D L+G LN                 +   L +   D+D FK I
Sbjct: 564 IAKLQDELDRASTLARHDPLTGTLNRKGLDELMEREIARARRHGTPLCVALLDVDNFKAI 623

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD  +  L+D           + R GGEEF      +S+ +   +   L++ 
Sbjct: 624 NDRVGHDTGDAALVHLADVARSAMRPQDMLARYGGEEFVVVLPETSQAQGIEIMTRLQRE 683

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  +++ + +   I IT S G+A+   +E  + I+ RADQ +Y+AK++G+NRVV 
Sbjct: 684 L-TTRLFLQNNEKILITFSVGVAQLGTQETSAEILRRADQGMYLAKRTGKNRVVA 737


>gi|297202554|ref|ZP_06919951.1| integral membrane phosphodiesterase [Streptomyces sviceus ATCC
           29083]
 gi|297148138|gb|EDY53953.2| integral membrane phosphodiesterase [Streptomyces sviceus ATCC
           29083]
          Length = 1066

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 16/194 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
            +   + E      ++   +  D L+ L N + F   +          +   +++F D+D
Sbjct: 571 FNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTRRVQQALSGRRSSDRGTAVLFIDLD 630

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE------ 191
            FK +ND  GH  GD+++   + +L           RLGG+EFAA  +G   ++      
Sbjct: 631 GFKAVNDTIGHQAGDELLVQAARRLQDAVRYGDTASRLGGDEFAALIVGDGTRDRTAREG 690

Query: 192 -AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
               LA+ LR  +  SQ  +  G  + +  S G+A          I+  AD A+Y AK  
Sbjct: 691 NILELADRLR--VTLSQPYLIDGNDVRVAASIGVAFAEPGLGAGEILRNADLAMYRAKAG 748

Query: 251 GRNRVVCFSDIENN 264
           G+ RV  ++     
Sbjct: 749 GKGRVELYAPQMQQ 762


>gi|316932426|ref|YP_004107408.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
 gi|315600140|gb|ADU42675.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
          Length = 502

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 18/204 (8%)

Query: 67  ENLSLVIISITISLLLGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           E   + I+ + ++  +  ++   L+E      +  ++ +L+  D L+GL N   F +++ 
Sbjct: 294 EATWIGIVLLVLATFVAAVTVFFLREIDRRAQAERQLEELAITDPLTGLTNRRKFDAAID 353

Query: 124 -------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRL 175
                    N  ++++  D D+FK  ND FGH  GD+++  ++  +   V        R 
Sbjct: 354 TEWRRAIRQNTPIALLMIDADHFKAYNDRFGHQAGDQMLVGIAVCIADTVQRAGDCAARF 413

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPI 233
           GGEEFA    G +   A  +A  +R+ ++       S     +T+S G+A          
Sbjct: 414 GGEEFAVLLPGLTASAAEAVAETIRRKVQE-----WSDIEGGVTVSVGVASTTPAAAHQW 468

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
             ++  AD+ALY AK+ GRNR V 
Sbjct: 469 HDLVEAADRALYAAKELGRNRCVV 492


>gi|226357225|ref|YP_002786965.1| diguanylate-cyclase [Deinococcus deserti VCD115]
 gi|226319215|gb|ACO47211.1| putative diguanylate-cyclase [Deinococcus deserti VCD115]
          Length = 805

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 9/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFG 147
           L  +   ++  +  D L+GL N + F +    +       +L ++F D+D FKQ+ND  G
Sbjct: 355 LEQAQQHLAYRATHDALTGLHNRAHFQAEAERHLADLSGGELGMLFIDLDRFKQVNDTLG 414

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206
           H VGD+++  +  +L  V  T   V RLGG+EF     G     +A  +A  +   +   
Sbjct: 415 HDVGDELLDQVGQRLRNVVRTGDLVARLGGDEFTLLLPGLRDASDAERVARKVLASLA-- 472

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           Q     G  +HIT S G+A        I+T+   AD A+Y AK  G+N V  +S
Sbjct: 473 QPFQVGGHKLHITGSIGVAVAPQDGMDITTMQKHADVAMYRAKHDGKNAVRTYS 526


>gi|289209499|ref|YP_003461565.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
 gi|288945130|gb|ADC72829.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
          Length = 307

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 15/164 (9%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N  AF       ++     +  LS++  D+D+FK+IND++GH VGD+++  ++
Sbjct: 140 DELTGLGNRRAFEIQGAKWLADCRRQDRPLSVLAIDLDHFKRINDDYGHAVGDELLRRVA 199

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ--------INIS 211
           D L         + R+GGEEF A   G+    A   A  +R  I N +          + 
Sbjct: 200 DTLRAATRQSDLLVRMGGEEFLAVLPGADLACAMECAERIRTAIANIRATATADDASALQ 259

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S   + +T S G+A       +  +  +AD+ALY AK+SGRNRV
Sbjct: 260 SEGMVKVTASIGVASVGRSTTLQALYQKADEALYAAKQSGRNRV 303


>gi|78355616|ref|YP_387065.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218021|gb|ABB37370.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 403

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 77/264 (29%), Positives = 113/264 (42%), Gaps = 19/264 (7%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           L IW  +++   ++    F +  + FF+           + L  + L+PF     +  E 
Sbjct: 129 LLIWRLNDQI--AYILWLFALPPAAFFTFGTKRAAVALGLLLIALLLSPFVSPAAMPPET 186

Query: 69  LSL------VIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
            SL      +    T+SL      Y      + L      + Q +  D L+GLLN     
Sbjct: 187 FSLSYFVRVIAAFFTLSLFSALGEYSRAHTQRTLVALTREMEQCACTDPLTGLLNRRGIY 246

Query: 120 SSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L     +        S++  D+D+FK +ND FGH  GD V+  L++           V
Sbjct: 247 DRLNEERARATRSGSTFSVILCDVDHFKNVNDCFGHQCGDHVLHQLAEHFRRSVRGQDVV 306

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232
            R GGEEF      + EQ A  LA  LR  +E + +N   G  I IT+S G+ E    E 
Sbjct: 307 CRWGGEEFLFILPETDEQGALNLAEKLRSTVEQTPVNYH-GMPIDITLSLGVQECTLTES 365

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
               I  ADQ LY+AK+ GRN+VV
Sbjct: 366 TEFHIRVADQKLYIAKEHGRNKVV 389


>gi|332995577|gb|AEF05632.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Alteromonas sp. SN2]
          Length = 646

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 99/216 (45%), Gaps = 24/216 (11%)

Query: 66  VENLSLVII---SITISLLLGYISGSI----------LKELFISYNRISQLSRIDCLSGL 112
           V N++L II   SI + L   +IS ++          +K L  S  R  Q++  D L+GL
Sbjct: 169 VANITLSIIILSSIVVLLFAAFISRAVSSGLTSREEAMKALAESEKRNKQMAHTDALTGL 228

Query: 113 LNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N +    ++          N   +++F D+D+FK IND+ GH +GD ++  ++ ++   
Sbjct: 229 PNRNLLEHTVDKAINMSERSNLPFAVMFIDLDHFKDINDSLGHALGDTLLITMAQRISDA 288

Query: 166 FGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                 V R GG+EF A      S +    +A+ +   I  S          +IT S G+
Sbjct: 289 IRATDVVVRFGGDEFVAVTDCFESIETIDFIAHRILDTISKS--VQLGNNDYYITASIGV 346

Query: 225 AERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           A         S ++  AD A+Y AK++G+N+   F 
Sbjct: 347 ACYPQNGANSSLLLKHADTAMYQAKEAGKNQYQAFD 382


>gi|302186775|ref|ZP_07263448.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 332

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
              + E     + + + +  D L+   N   F                 L+ +  DID F
Sbjct: 154 AEDITEKKHLEDELQRRATTDVLTQSSNRRHFFECAQREFELARLNGTPLAFLLLDIDDF 213

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND +GH  GD V+  +++            GR+GGEEFAA   G +   A  +A  L
Sbjct: 214 KLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCAPDMAMQIAERL 273

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           ++ I+      S G +  IT S G+      +P + T+  RAD A+Y AK+ G+N++V 
Sbjct: 274 QREIQRQNFQ-SGGTTFSITASQGLTNLGPDDPSLETLYGRADAAMYQAKRQGKNQIVL 331


>gi|302134297|ref|ZP_07260287.1| GGDEF domain protein [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 528

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 83/184 (45%), Gaps = 11/184 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDN 145
           L      +  ++  D L+GL N   F                 LS++  D D+FK+ ND+
Sbjct: 322 LIQLNQHLEFIASEDKLTGLANRRRFDQFLDVEFKRARRERNMLSLILMDADHFKRYNDH 381

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           FGH  GD+ +  L+  +      P     R GGEE A    G+ E  A  +A ++ + I 
Sbjct: 382 FGHLAGDECLVALARLVEQCIRRPGDVAARYGGEEIAVVLPGTDEASARQVAENILQAIR 441

Query: 205 NSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           + QI   + P   +T+S G+A             +I  AD+ALY AK  GRNRV   S+I
Sbjct: 442 DEQITHPASPFGIVTVSLGVATVVGSNRQISQRGLIELADRALYAAKSQGRNRVNVASEI 501

Query: 262 ENNT 265
             NT
Sbjct: 502 AFNT 505


>gi|229124919|ref|ZP_04254095.1| GGDEF domain protein [Bacillus cereus 95/8201]
 gi|228658549|gb|EEL14213.1| GGDEF domain protein [Bacillus cereus 95/8201]
          Length = 351

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 108/227 (47%), Gaps = 12/227 (5%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           S+F   + F  N++  +I   P   L   +   ++L ++  +++  + +IS + + +   
Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLSMLFKDM-SIVALYLVCSSVAAYITFISANYVLQSNE 182

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
            + ++ Q + ID L+GL N   F   +  +       N  L ++  DID+FK +ND +GH
Sbjct: 183 LFQKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSVNDTYGH 242

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           P GD+V+  +   L  V   P    R GGEEFA             +   +R  +E    
Sbjct: 243 PAGDEVLKRIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAAVEKHSF 302

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  G  I IT+S GI+    ++     I  AD ALY +K++GRN+V
Sbjct: 303 QLLDGTKIKITVSVGISVY--EQSPERFIQAADDALYYSKRNGRNQV 347


>gi|168184822|ref|ZP_02619486.1| GGDEF/HD domain protein [Clostridium botulinum Bf]
 gi|182672099|gb|EDT84060.1| GGDEF/HD domain protein [Clostridium botulinum Bf]
          Length = 567

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 77/273 (28%), Positives = 127/273 (46%), Gaps = 36/273 (13%)

Query: 28  MIYFSIFFSIFIATVIFIAN---IFLFYIGLTPFY-GLEY-ILVENLSLVIISIT----- 77
           ++   +FF + + T  + +    +FLF I +T    G++Y I++  L+ +II I      
Sbjct: 91  IVLILLFFVVVLGTGTYASQYKFLFLFMIIITTIQSGMKYGIIMACLASLIILIMDIVCV 150

Query: 78  -----------------ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
                            + +L  +  G  +K       ++  L   D L+ + NH  F  
Sbjct: 151 PNLVVNEYFEQDLILAGVLILTAWPLGFYVKVENEHIEKLESLVNKDGLTDVYNHRFFHD 210

Query: 121 SL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           +L          NE LS++F DIDYFK  ND +GH  GD+V+  + + L         V 
Sbjct: 211 ALSKKVIECEEENEALSMIFIDIDYFKHYNDLYGHQKGDQVLKTIGEILKNNTRKEDIVA 270

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERCHKEP 232
           R GGEEF+     +SE+EA  +A ++R  IE +      + P+ ++T+S GI+   +K  
Sbjct: 271 RYGGEEFSVLLPNTSEEEAINIAENIRGKIEYTYFEGEENQPNGNLTVSMGISVYPYKAK 330

Query: 233 IS-TIIYRADQALYVAKKSGRNRVVCFSDIENN 264
               +I  AD ALY AK   +NRV  ++ I + 
Sbjct: 331 SDMELIKSADDALYRAKFFNKNRVEAYTSILDE 363


>gi|163783339|ref|ZP_02178332.1| hypothetical protein HG1285_13857 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881447|gb|EDP74958.1| hypothetical protein HG1285_13857 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 540

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 53/160 (33%), Positives = 86/160 (53%), Gaps = 11/160 (6%)

Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           + +D L+G+ N  AF       I    + ++ +S++  D+D FK++ND+ GH VGD+V+A
Sbjct: 380 AYMDSLTGVFNRRAFDEFGRELIERFLTLSKPISVLMIDVDDFKRVNDSHGHQVGDQVLA 439

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            L   +         V R GGEEF A   G+S + A    + +R+ +E            
Sbjct: 440 ELGRLIRETLRETDIVFRYGGEEFLALLPGTSLEGALRAGDKVRRRVEAHSFPPGDQ--- 496

Query: 217 HITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255
            IT+S G+A+    +     ++ RAD+ALY+AKK+G+NRV
Sbjct: 497 RITVSVGVAQGTEGDERAEDVVSRADRALYIAKKTGKNRV 536


>gi|77920300|ref|YP_358115.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77546383|gb|ABA89945.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Pelobacter carbinolicus DSM 2380]
          Length = 429

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 11/176 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           +L I   ++ Q +  D L+GL N    I  L          N +L+++F D+D FK +ND
Sbjct: 254 QLLILNRKLQQQATHDSLTGLPNRRLLIDRLEQALARARRNNGRLAMLFIDLDGFKAVND 313

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
             GH  GD+V+  +  +L  +  +     RLGG+EF         +Q+A+++A  + + I
Sbjct: 314 RLGHTAGDEVLEIIGRRLSHLLRSADTAARLGGDEFGLVLSKIKDKQDASLVAQKVLEAI 373

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +    I      +I  S GI+    H      +I RAD A+Y  K SG+     +
Sbjct: 374 AS--PFIIRDERCYIGASIGISLYPEHGLSADDLISRADTAMYKVKHSGKGTFAFY 427


>gi|291060338|gb|ADD73073.1| ggdef domain-containing protein [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 347

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 74/256 (28%), Positives = 123/256 (48%), Gaps = 22/256 (8%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV 72
           L   K++ S       ++  +     +  +I +      +   TP+   + I+++   L 
Sbjct: 108 LAPSKSVRSLLDLQPSLFVPLRAKDHLVGLILLGKKINVHEAYTPYD--QSIIMDIAQLA 165

Query: 73  IISITISLLLGYISGSILKELFISYNRISQL-SRIDCLSGLLNHSAFISSLGSYNEKLSI 131
            I+I  +LLL   +  ++ ++ + +   + L +++D L              S  E +S+
Sbjct: 166 AIAINNALLLEQATTDMMTQMKLKHYFFAMLTAKLDTL--------------STQETVSV 211

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FKQIND  GH  GD V+  +++ +           R GGEEF      +S +E
Sbjct: 212 LMLDIDFFKQINDTHGHLCGDLVLQHVAEIIRSCTRPCDIASRYGGEEFMLMLSNNSSRE 271

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKS 250
           AA +A  +R   E   I      SI +T+SAG+AE   ++E   T+I RAD ALY AK++
Sbjct: 272 AAHVAERIRVATEQLTIPYHE-VSIRVTVSAGVAEYLPNQESAETLIKRADSALYQAKQN 330

Query: 251 GRNRVVCFSDIENNTC 266
           GRN+VV     E N C
Sbjct: 331 GRNKVVI---SEKNMC 343


>gi|242237803|ref|YP_002985984.1| diguanylate cyclase with hemerythrin-like metal-binding domain
           [Dickeya dadantii Ech703]
 gi|242129860|gb|ACS84162.1| diguanylate cyclase with hemerythrin-like metal-binding domain
           [Dickeya dadantii Ech703]
          Length = 531

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 71/256 (27%), Positives = 118/256 (46%), Gaps = 27/256 (10%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL 69
           +  +  +++L +   +  ++  +I    FI  +I      L Y G TPF     +L  + 
Sbjct: 133 TYLMTQDQSLPTRGRNLMVLGLTINVMAFIVRIIL-----LIYTGATPFS----VLSSST 183

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQL----SRIDCLSGLLNH-------SAF 118
           +  +  +T  + L +I+  ++    ++ +R   L    +R D L+G  N           
Sbjct: 184 AQTVTYMTSFMTLLFIANGMI---MMAKDRAEHLNNLMARQDSLTGCWNRIRIQEIARQE 240

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           +  L  Y   +S++ FD+D+FK++ND FGH VGDKV+   SD  + +  T    GR GGE
Sbjct: 241 MERLERYGYPVSLLMFDLDHFKEVNDKFGHSVGDKVLKGFSDTALALLRTTDVFGRWGGE 300

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EF A    +    A   A  +R  +E           + IT S G++     +   + + 
Sbjct: 301 EFVAILPATGFTGAVQTAERIRAALEAQTFP----GGVKITTSIGVSVCQSTDHWESWLG 356

Query: 239 RADQALYVAKKSGRNR 254
           RAD ALY AK +GRNR
Sbjct: 357 RADAALYRAKAAGRNR 372


>gi|297564629|ref|YP_003683601.1| diguanylate cyclase [Meiothermus silvanus DSM 9946]
 gi|296849078|gb|ADH62093.1| diguanylate cyclase and serine/threonine protein kinase with TPR
           repeats [Meiothermus silvanus DSM 9946]
          Length = 560

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 82/185 (44%), Gaps = 19/185 (10%)

Query: 90  LKELFISYNRI-----------SQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           LKEL  +  +             +LS  D L+GL N       L         Y   LS+
Sbjct: 377 LKELHEALRQADQQKNLLLQQLERLSLEDALTGLYNRRYLDGRLAEEFIRARRYQHPLSV 436

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D FKQIND   H VGD+ +  ++  L         V R GGEEFA   L +SE++
Sbjct: 437 AIADLDNFKQINDKLSHAVGDEALRTVARLLRQCCRETDLVARYGGEEFALVLLEASEEQ 496

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A  +   +R  I     +    P + +T+S G+      E    ++  AD+ LY AK  G
Sbjct: 497 ARSICEKIRSAIAEYPWSTVH-PELKVTVSIGLCSDLGLESHQHMLAEADRNLYRAKHLG 555

Query: 252 RNRVV 256
           +NRVV
Sbjct: 556 KNRVV 560


>gi|224373793|ref|YP_002608165.1| diguanylate cyclase/phosphodiesterase [Nautilia profundicola AmH]
 gi|223589128|gb|ACM92864.1| diguanylate cyclase/phosphodiesterase [Nautilia profundicola AmH]
          Length = 686

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 64/216 (29%), Positives = 106/216 (49%), Gaps = 19/216 (8%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ--------LSRIDCLSGL 112
           L  ++   L +  IS+ I++ + Y+   I+ +LF  Y++  Q         +  D L+GL
Sbjct: 204 LNDVIKIILLVSFISMIITMFIMYLLSIIVNKLFRVYDKTIQSEKHKLFIRANFDALTGL 263

Query: 113 LNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N   F+  L          N+K +++F DIDYFKQIND  GH VGDKV+  L+++L   
Sbjct: 264 CNRECFMQKLKDAYYDSIRNNKKFAVLFIDIDYFKQINDTDGHKVGDKVLKILAERLKKS 323

Query: 166 FGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                 V R GG+EF        S ++  I    + + I+  +I I +    ++T S GI
Sbjct: 324 VRKTDVVSRFGGDEFLVLLKDIHSIEDVIIYTQRILEEIKK-EIEI-NSKKYYVTGSIGI 381

Query: 225 AERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +      E +  +I  AD A+Y +K  G++R   ++
Sbjct: 382 SIYPDNGEDLDKLIIYADIAMYQSKNDGKDRFNFYN 417


>gi|156936414|ref|YP_001440330.1| hypothetical protein ESA_04315 [Cronobacter sakazakii ATCC BAA-894]
 gi|156534668|gb|ABU79494.1| hypothetical protein ESA_04315 [Cronobacter sakazakii ATCC BAA-894]
          Length = 507

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 11/179 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           +  +L  S + +  L+ +D L+GL N   F       ++   +    +S+V  DIDYFK 
Sbjct: 313 LRDDLTRSNHILQDLALLDGLTGLPNRRQFDIYLEQCMTRAQATGAPVSLVMCDIDYFKS 372

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND  GH  GD+ +  + + L  +       V R GGEEFA    G++   A  +A    
Sbjct: 373 YNDTLGHVAGDECLKAVGEILHHLPLHKSDRVARYGGEEFAIILPGANAHAAEQVAMRAL 432

Query: 201 KIIENSQINISSGPSIH--ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
           + I+ +++   + P +   +TISAG A     +    T+  +AD+ALY AK++GRN VV
Sbjct: 433 QAIQQARLAHPATPMVEKVLTISAGTATMTGDDASGETLKNQADEALYQAKRAGRNCVV 491


>gi|119944709|ref|YP_942389.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Psychromonas ingrahamii 37]
 gi|119863313|gb|ABM02790.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
          Length = 962

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 11/212 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISS- 121
           I +E+ ++  +      +  Y++    + E   +      L+  D L+GL N     +  
Sbjct: 480 IYIESATITPVKQADGKITNYVAIKEDITEKKKAEAYTENLAYFDQLTGLPNRRMLQAQV 539

Query: 122 ------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   S ++ L+++F D+D FK IND+ GH VGD+V+  ++ ++         V RL
Sbjct: 540 KYRLNMAQSNHQPLTVMFLDLDNFKNINDSLGHTVGDQVLIKIAKRIKKAIREVDTVSRL 599

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPIS 234
           GG+EF      +    A  +A  L + I  +  ++     + IT S GIA          
Sbjct: 600 GGDEFIMLFPNTDANAAMHIATTLIQEISKA--SVVEHNELTITPSIGIAIYPNDGNDFK 657

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           T++  A+ A+Y  K   RN     +     + 
Sbjct: 658 TLLKNAETAMYRVKNDSRNGFHFVTPEMQLSA 689


>gi|126174259|ref|YP_001050408.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|125997464|gb|ABN61539.1| diguanylate cyclase [Shewanella baltica OS155]
          Length = 928

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 92/208 (44%), Gaps = 12/208 (5%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
              L YI+   + L ++ + + LL+       + +  ++  R+  ++  D L+ L N + 
Sbjct: 722 LQWLRYIVFGVIILCLVMVAV-LLVNRRLNREITQRLVAEKRLLHVANHDALTQLPNRAL 780

Query: 118 FISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
               L              +++F D+D FKQIND  GHP+GD+++  ++ +L  V     
Sbjct: 781 LDDRLAQALLSHQREQAHFALLFVDLDGFKQINDQHGHPIGDELLIQVAQKLTKVIRGSD 840

Query: 171 FVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC- 228
            V R GG+EF            A  +A+++ + +  S   +  G S+ I +S G+     
Sbjct: 841 TVARFGGDEFVILLNRVQDLDAATQVADNILQAL--SSPLLIQGVSVSIAVSMGVVIYPR 898

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256
             +    ++ +ADQ +Y AK  G     
Sbjct: 899 DGDTAIGLLKKADQLMYKAKSCGGRCYR 926


>gi|323500035|ref|ZP_08104989.1| diguanylate cyclase [Vibrio sinaloensis DSM 21326]
 gi|323314891|gb|EGA67948.1| diguanylate cyclase [Vibrio sinaloensis DSM 21326]
          Length = 315

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 87/179 (48%), Gaps = 9/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFK 140
             +        ++ QL   D L+GL+N   F+S L SY  +        S++  D+D FK
Sbjct: 135 RDISRTVEKERQVKQLLERDELTGLVNRRTFLSKLTSYFNQFKLNGLHTSVLIIDLDRFK 194

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
             ND  GH  GDKV+  ++D       +   +GRLGGEEFA      S  +A  +   LR
Sbjct: 195 HWNDTLGHVTGDKVLKHVADLCSKQLRSVEIIGRLGGEEFAVILPNVSSDKALAIGERLR 254

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCF 258
           K +E +     +   I +TIS G+      +     I+ R+D+A+Y +K +GRN+V  +
Sbjct: 255 KSVEQTPYR-DNDQEIKVTISVGVCSFSPSDTSKLDILERSDKAMYKSKHTGRNKVSTY 312


>gi|320354616|ref|YP_004195955.1| PAS/PAC sensor-containing diguanylate cyclase [Desulfobulbus
           propionicus DSM 2032]
 gi|320123118|gb|ADW18664.1| diguanylate cyclase with PAS/PAC sensor [Desulfobulbus propionicus
           DSM 2032]
          Length = 447

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 88/180 (48%), Gaps = 11/180 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
            + E  +  + +++L+  D L+GL N + F++ L     +       +++ FFD+D FKQ
Sbjct: 269 DVTERKVYESELTKLAFHDPLTGLANRACFMNRLRRALTRADAQGLSVAVFFFDLDNFKQ 328

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           IND  GH  GD+V+  ++D++           RLGG+EF     G S+ ++   LA  + 
Sbjct: 329 INDTLGHACGDQVLRLVADRVQGSLRREDTAARLGGDEFTVLVEGVSTLEQVLPLAERVL 388

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++        G  + +  S G+A      +    ++ +AD A+Y AK SG+ +   F+
Sbjct: 389 HSLQT--PFSHGGHELLVGGSMGVALSVPNVDSAEDLVRKADLAMYRAKNSGKGKYTVFA 446


>gi|256822609|ref|YP_003146572.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Kangiella koreensis DSM 16069]
 gi|256796148|gb|ACV26804.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Kangiella koreensis DSM 16069]
          Length = 629

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 89/181 (49%), Gaps = 11/181 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + +L +       L+  D L+ L N + F   L           E L+++F D+D FK 
Sbjct: 190 DITDLKLKEREARYLAYHDELTNLPNRTLFFERLEHALDLAKRKEELLAVIFLDLDEFKT 249

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLR 200
           +ND FGH  GD ++  ++ +++V         RLGG+EF        ++EA + + + ++
Sbjct: 250 VNDTFGHAQGDLLLQKVAKRILVALREHDTFARLGGDEFVIMLEDVEDREAIVNVLDRVK 309

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             + ++ I + +   ++IT S G+A      +    ++ +AD A+Y +KK G+N    +S
Sbjct: 310 HAL-DTPITLGTNQ-VYITPSLGVAIYPEDGDDAQDLLKKADMAMYNSKKHGKNTYSFYS 367

Query: 260 D 260
           +
Sbjct: 368 N 368


>gi|149375006|ref|ZP_01892779.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter algicola DG893]
 gi|149360895|gb|EDM49346.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter algicola DG893]
          Length = 804

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 11/188 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
            I G  +        ++ + +  D L+GL N    +  L          +  + ++F D+
Sbjct: 355 LILGEDISIRKRYEQQLLRQANYDILTGLPNRMLALDRLKLALAQARRESSLVGVMFLDL 414

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-IL 195
           D FK IND  GH  GD ++   + ++         V RLGG+EF     G +  EA   +
Sbjct: 415 DNFKHINDTLGHDAGDNLLIEAARRISSCLRGTSTVARLGGDEFLVILPGLTGPEATSQV 474

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNR 254
           A  + K        + +G  + +T S GI+   +    S T++  AD A+Y AK  G++ 
Sbjct: 475 AERILKTFA--PPYLLNGQEVFVTTSIGISIFPNDSDNSGTLLQHADAAMYQAKHKGKSA 532

Query: 255 VVCFSDIE 262
              F+   
Sbjct: 533 YAHFAPEM 540


>gi|126666371|ref|ZP_01737350.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter sp. ELB17]
 gi|126629172|gb|EAZ99790.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter sp. ELB17]
          Length = 723

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 83/193 (43%), Gaps = 12/193 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
           Y +   + E   +   I+  +  D L+ L N + F   L           +KL+++F D+
Sbjct: 272 YGTARDVTERKEAEAFINFQAYHDLLTRLPNRALFTDRLSLAITQASRSKQKLAVMFLDL 331

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAIL 195
           D FK +ND  GH +GD ++  ++ +L         + R GG+EF        +  +A  +
Sbjct: 332 DRFKVVNDTLGHAMGDVLLQVVTQRLEHCLRKGDTLSRFGGDEFTLLLPAINNSNDARRI 391

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           A  L   +  +   +     + + +S GI+        +  +I  AD A+Y  K  G++ 
Sbjct: 392 AKKLIDAL-KAPFQLGE-HEVFVGVSIGISLYPEAGISMDQLIQNADIAMYHVKARGKDG 449

Query: 255 VVCFSDIEN-NTC 266
              +S+  N +T 
Sbjct: 450 YRFYSESMNIDTA 462


>gi|95928551|ref|ZP_01311298.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95135341|gb|EAT16993.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 526

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 71/237 (29%), Positives = 110/237 (46%), Gaps = 18/237 (7%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL-LLGYISGSILK 91
           +FF +FI T++ +        G   F      L E+L L +   T +L  L       ++
Sbjct: 295 LFFCVFILTLMSLFG------GTGFFLKQVRSLQESLELKVAKRTSALQALNETLSLEIQ 348

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           E   +   + +LS  D L+G+ N   F        S+       LS++  DID FK  ND
Sbjct: 349 ERKKAQRALKELSEKDVLTGIYNRRKFNTYYETEWSAARREGRVLSLLMIDIDLFKIYND 408

Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD+ +  ++  L   V     FV R GGEEF      +S+Q A  LA  +R+ +
Sbjct: 409 RYGHLAGDQALHQVAITLNQTVSRPRDFVARYGGEEFICLLPETSQQAAVQLAETMRQHV 468

Query: 204 ENSQ-INISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVC 257
           E+   I+  S  +  IT+S G+A    ++      +I  AD+ALY+AK+ GRN    
Sbjct: 469 EDLHYIHEFSDTANVITVSIGVASVIPEKNQAKEELIDLADKALYLAKRDGRNCTRI 525


>gi|312127440|ref|YP_003992314.1| diguanylate cyclase with gaf sensor [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777459|gb|ADQ06945.1| diguanylate cyclase with GAF sensor [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 557

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 85/185 (45%), Gaps = 9/185 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFFDIDYFKQ 141
           SI  E    Y ++  ++ +D L+G  N       L    +       +SI  FD+D FK+
Sbjct: 373 SIALENSSLYQQMRSMAMVDGLTGAFNRIYLYEVLEREIQASAGRYPISIALFDVDNFKK 432

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH  GDKV+  +             V R GGEEF          EA  +   +R+
Sbjct: 433 LNDTYGHLFGDKVLQTIVRIAREKVRKGDIVARYGGEEFIIVFNHLESNEAYKVVERIRR 492

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS- 259
            IE+  I   +     +T+S GIA    H E +  +I  AD A+Y AK SG+N  V ++ 
Sbjct: 493 AIESETIE-DNLIQTRVTVSFGIASYPLHAENVKDLIKCADVAMYRAKSSGKNCTVVYNQ 551

Query: 260 DIENN 264
           ++E  
Sbjct: 552 ELEMK 556


>gi|283852440|ref|ZP_06369709.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio sp. FW1012B]
 gi|283572178|gb|EFC20169.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio sp. FW1012B]
          Length = 814

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 23/198 (11%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYF 139
           S + +     N+++ ++  D L+GL N S  +  +           N + +++F D+D F
Sbjct: 361 SDITDRKHLENQLAHMAFHDPLTGLPNRSLCLDRIRQAIERSKRRENYQYAVIFLDLDRF 420

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND+ GH +GD+++  +S +L         V RLGG+EF      + S +E   +   
Sbjct: 421 KVINDSLGHHMGDRLLEGVSRRLRDCVRGLDTVARLGGDEFVVLLEETGSNREIIRIVKR 480

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
           +R  I +  I +     IH+T S GI       +    ++  A+ AL+ AK  GRNR   
Sbjct: 481 IRTAISD--IFVLCDHDIHVTCSMGIVISPALYDKPEELLRNANIALHRAKGEGRNRFKV 538

Query: 258 FS-----------DIENN 264
           F+           D+EN+
Sbjct: 539 FNTRMLEDAIRLMDLEND 556


>gi|241764427|ref|ZP_04762451.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Acidovorax delafieldii 2AN]
 gi|241366169|gb|EER60746.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Acidovorax delafieldii 2AN]
          Length = 1051

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 84/192 (43%), Gaps = 12/192 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
            ++   L +       I  L+  D L+ L N    +  L         +    +++  D+
Sbjct: 594 LVTMVDLSQRKADEEEIRYLAFYDPLTRLPNRRLLMDRLQQALATSARHQRSGALLLLDL 653

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAI 194
           D FK +N+  GH  GD ++  ++ +L         V R GG+EF      LG + +EAA 
Sbjct: 654 DNFKTLNETRGHERGDLLLQQVAQRLRQCVHEDDTVARPGGDEFVVVLEDLGDNPEEAAA 713

Query: 195 LANDL-RKIIENSQINISSGPSI-HITISAGIAERCH-KEPISTIIYRADQALYVAKKSG 251
            + ++ +KI+   +        + H ++S GI      +E +  ++ RAD A+Y AK +G
Sbjct: 714 RSEEIGQKILAALREPYQLDAEVHHSSLSMGITIFSGMRETVDELLKRADLAMYQAKGAG 773

Query: 252 RNRVVCFSDIEN 263
           R+ +  +     
Sbjct: 774 RDTLRFYDPRMQ 785


>gi|170691661|ref|ZP_02882826.1| diguanylate cyclase [Burkholderia graminis C4D1M]
 gi|170143866|gb|EDT12029.1| diguanylate cyclase [Burkholderia graminis C4D1M]
          Length = 509

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/235 (22%), Positives = 101/235 (42%), Gaps = 19/235 (8%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            + + +   +   +I++ +       G    L+  L+L +I++ +      +    ++  
Sbjct: 267 MYPLILDVALSTRDIYVGWRRRAWIIG---SLIGALNLTMIALAV------LFAQQIRRR 317

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNF 146
            I+   +  L+  D L+G+ N   F  S  +   +       LS++  D+D FK  ND +
Sbjct: 318 LIAEEELRLLASTDGLTGVDNRRTFEQSAENEWRRVHRNGGSLSMLLIDVDSFKGFNDLY 377

Query: 147 GHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           GH  GD  +  ++  +   V        R GGEEFA     + +  A  +   +R  +E 
Sbjct: 378 GHSAGDDALITVARCITQNVQRPGDTAARYGGEEFAVLLPDTDQAGAMSIGEKIRAAVEA 437

Query: 206 SQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   +     +T+S G+A    +       ++  ADQALY AK +GRNRV  +
Sbjct: 438 VGLGHVASSHHVLTVSIGVATMRGEAFTSSRALVDAADQALYAAKDAGRNRVSSY 492


>gi|161899047|ref|YP_198017.2| response regulator PleD [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
          Length = 458

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 59/193 (30%), Positives = 97/193 (50%), Gaps = 15/193 (7%)

Query: 79  SLLLGYISGSILKELFISYNRI-----SQLSRIDCLSGLLNHSAFISSLG-------SYN 126
           S L+  ++  + ++ +    R+     +++S  D L+   N   F + L          N
Sbjct: 264 SELIARVNLQVKRKRYQDALRMNLFNNAEMSIKDPLTNCYNRRYFDTHLRNIIKDSVEKN 323

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
            +LS++  DIDYFK +ND+FGH  GD+++  +  ++         + R GGEEF      
Sbjct: 324 RRLSLMILDIDYFKIVNDDFGHSAGDELLKQIQKRISENIRVTDLLARFGGEEFVVVMPD 383

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHK--EPISTIIYRADQA 243
           ++  +A I+A  +R+II      +S   + H +T+S G+ E      + I   I RAD+ 
Sbjct: 384 TNISDAYIVAERIREIIATEPFILSDKNTTHNVTVSIGVVEMQESDLDNIEKFIVRADRY 443

Query: 244 LYVAKKSGRNRVV 256
           LY AK SGRNRVV
Sbjct: 444 LYKAKNSGRNRVV 456


>gi|156977902|ref|YP_001448808.1| hypothetical protein VIBHAR_06694 [Vibrio harveyi ATCC BAA-1116]
 gi|156529496|gb|ABU74581.1| hypothetical protein VIBHAR_06694 [Vibrio harveyi ATCC BAA-1116]
          Length = 337

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 5/172 (2%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNF 146
           +  L      + + +  D LS L N  AF S L      N+ +++V  DID+FK  NDN+
Sbjct: 164 ISRLKNQLAEVQKDALFDGLSNLYNRRAFDSDLQMLIDSNQAMTLVMLDIDHFKAFNDNY 223

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD VI  ++ +L       +   R GGEEFA      S +     A+ LR++IE  
Sbjct: 224 GHLFGDTVIKAIARRLQQSCRDGISAYRFGGEEFALIIPNKSLRIGRQYADTLRRMIEKL 283

Query: 207 QIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++    S      IT S G+AE    + + +++ +AD+ LY AK+ GRNRV+
Sbjct: 284 RVRDKRSGSQVQSITASFGVAEYEVGDTLESLVNKADKQLYEAKQLGRNRVM 335


>gi|186472539|ref|YP_001859881.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum
           STM815]
 gi|184194871|gb|ACC72835.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum
           STM815]
          Length = 780

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 114/233 (48%), Gaps = 17/233 (7%)

Query: 36  SIFIATVIFIANIFLFYIGLTPF-----YGLEYILVENLSLVIISITISLLLGYISGSIL 90
            +++    F     LFY   TPF     +    + V     V+I++  + +  +    + 
Sbjct: 126 PLWLTPAHFCIGTALFYAAGTPFLLSLPHPHGDVSVVCWMWVLIALPTAAVFHFGFYGLR 185

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQIND 144
           +  F+  +R+++L+  D L+GL N  AF+              K S +F DIDYFK +ND
Sbjct: 186 RNHFLLEDRLARLAATDPLTGLQNRRAFLEQAALRLSSLDPGAKTSAIFLDIDYFKSLND 245

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH VGD+ ++ ++  L  + G    V R+GGEEFA    G++ + A  LA  LR  I 
Sbjct: 246 QFGHAVGDQALSDVARVLKEMTGAGDIVSRIGGEEFA-LLHGAALRPAVQLAETLRAAI- 303

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +I    G    +  S G+AE    E +  ++ RAD+AL  AK SGRNRV  
Sbjct: 304 -GRIARPDGQ---LGASFGVAEYRPGESVMALLDRADEALLRAKYSGRNRVCA 352


>gi|323500039|ref|ZP_08104993.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Vibrio sinaloensis DSM 21326]
 gi|323314895|gb|EGA67952.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Vibrio sinaloensis DSM 21326]
          Length = 664

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 98/230 (42%), Gaps = 25/230 (10%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISG-------SILKELFIS-------YNRISQLSR 105
           G++     +++L++  I I++    I         S+LK L  +         ++   + 
Sbjct: 165 GIDSYTRTSITLILAVIVIAVSSIRIQHKHEKSRDSLLKSLTEAKSAIEEKNTQLHNRAY 224

Query: 106 IDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+GL N S F+  L           +  +++F D+D+FK +ND  GH VGD+++  +
Sbjct: 225 FDPLTGLPNRSLFLDRLNQSILNAERSGKSFALLFIDLDHFKDVNDMHGHEVGDQLLKQV 284

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR-KIIENSQINISSG-PS 215
           S ++           R  G+EF            A  +AN +  K+I         G  S
Sbjct: 285 SKRIKQSIRVTDLSARFSGDEFVVVLDHIQDVSVAINVANRIATKLINALSRPFQIGNQS 344

Query: 216 IHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           + I+ S G++          T+I  AD A+Y AK SG+N    +S   N 
Sbjct: 345 VLISASIGVSIYPEDSATQDTLIRFADNAMYHAKSSGKNNFQFYSKELNR 394


>gi|323495182|ref|ZP_08100266.1| diguanylate cyclase [Vibrio brasiliensis LMG 20546]
 gi|323310541|gb|EGA63721.1| diguanylate cyclase [Vibrio brasiliensis LMG 20546]
          Length = 439

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 90/182 (49%), Gaps = 9/182 (4%)

Query: 84  YISGSILKELFISYN----RISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFD 135
           YI   I+ E  ++ N    ++   +  D L+ + N S F       L +  + L++V  D
Sbjct: 237 YIVRRIILEDSVARNSYERKLYIAATTDPLTKVSNRSHFFEVGERLLRNEEQPLAVVLID 296

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK+IND +GH VGD  ++  ++           +GR+GGEEFA      + + A ++
Sbjct: 297 IDHFKKINDKYGHHVGDAALSSFAEICCREIRASDVIGRIGGEEFAVILRNVTPEIAHVI 356

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              +R  +       + G  + +TIS G+     +  + ++I  AD ALY AK  GRNRV
Sbjct: 357 TERIRNSVAERYFE-ADGVKLLMTISIGVVYSEQEHHLESLIKEADSALYQAKAGGRNRV 415

Query: 256 VC 257
           V 
Sbjct: 416 VM 417


>gi|94263964|ref|ZP_01287766.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455636|gb|EAT05818.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 302

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQIND 144
           EL    + +  ++ +D L+G+ N   F  +L           + LS++  DID+FK  ND
Sbjct: 125 ELKRYQDFLKNIALLDGLTGIANRRNFDQALEREWKRAQRSTQPLSLLLLDIDFFKPYND 184

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           N+GH  GD  +  ++  L            R GGEEF      ++++ A  +  ++R+ I
Sbjct: 185 NYGHGAGDDTLRQVASGLQQSLSRPADLAARYGGEEFVCLLPETNQEGAQKMGEEIRRAI 244

Query: 204 ENSQINISSGPSI-HITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVC 257
               I  +      HIT+S G A          + ++  AD+ALY AK+SGRNRVV 
Sbjct: 245 AGLAIPHAHSQVADHITVSVGAASMTANGNNNPAQLLENADKALYRAKESGRNRVVI 301


>gi|24214183|ref|NP_711664.1| response regulator [Leptospira interrogans serovar Lai str. 56601]
 gi|24195084|gb|AAN48682.1| response regulator [Leptospira interrogans serovar Lai str. 56601]
          Length = 352

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 60/182 (32%), Positives = 101/182 (55%), Gaps = 9/182 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           S L  + +  +R+ +L+ +D ++GL  H  F + L    ++       L+++F D+D FK
Sbjct: 170 STLAGIAVENSRLYELATVDMMTGLKVHHYFQTKLKEEMDRCRKKKSYLTLLFTDVDNFK 229

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           + ND  GH  GD+V+  ++ QL+   G      R GGEEF     G+  +    +   +R
Sbjct: 230 KFNDTHGHQAGDQVLIEVAKQLIRQAGKHDIPARYGGEEFCLVMPGADLERGYEMGEMIR 289

Query: 201 KIIENSQI-NISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           K +E+S + N + GP + +T+S G++E   K+     +I RAD+ALY AK SG+NR VC+
Sbjct: 290 KAVESSSVKNPNGGPDLKVTLSVGVSEFWPKDKNNRDLIERADKALYTAKNSGKNRTVCY 349

Query: 259 SD 260
            +
Sbjct: 350 KE 351


>gi|114047859|ref|YP_738409.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113889301|gb|ABI43352.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 467

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 104/241 (43%), Gaps = 7/241 (2%)

Query: 24  PHTFMIYFSI--FFSIFIATVIFIANIFLFYIGLTPFYGLEYILV-ENLSLVIISITISL 80
           P   ++ F +  F+    ++   +  I     G  PF           +   ++S  +++
Sbjct: 226 PLLVVLSFEVTRFYLALFSSASMLFMILATAQGYGPFINATSFQTNAEMMAFVLSSALTV 285

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDID 137
               +  + L+          Q +  D LSGLLN   F+  L S    + + S+   D+D
Sbjct: 286 FGVSLQRAQLRRTEKDKQTAVQEALYDPLSGLLNRRGFMPQLTSLTGTSTRYSVAMLDLD 345

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK IND +GH VGD+VI  L+  +     +     RLGGEEFA         +   +  
Sbjct: 346 NFKMINDTYGHSVGDRVIQLLAQLIHNHSRSQDIAARLGGEEFALVLRDIDVAQVYPVLE 405

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +RK      I  +   +I+ T+S G  E        ++++ AD+ALY AK  G+N +V 
Sbjct: 406 RIRKSFAEMSI-AAEEHTIYCTVSIGWVEYQQGITGESLLHLADKALYQAKAQGKNTIVK 464

Query: 258 F 258
           +
Sbjct: 465 Y 465


>gi|333007296|gb|EGK26778.1| hypothetical protein SFK272_1979 [Shigella flexneri K-272]
 gi|333019292|gb|EGK38576.1| hypothetical protein SFK227_1579 [Shigella flexneri K-227]
          Length = 410

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 74/175 (42%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 238 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 296

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 297 HINDLYGHSKGDEVLCALARPLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 356

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +    I+         T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 357 VSVAKVSISCLP----RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 407


>gi|297569012|ref|YP_003690356.1| diguanylate cyclase with GAF sensor [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924927|gb|ADH85737.1| diguanylate cyclase with GAF sensor [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 493

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 13/176 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           E    +  + + +  D L+G+ N   F+        K       LS++F DID+FK +ND
Sbjct: 186 ERARLFENVRKEAMHDGLTGIYNRRFFLECAERELHKCQRGSNSLSLLFIDIDHFKDVND 245

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           NFGH  GD+V+  L+  L           R GGEEF      ++ + A  LA  LR  + 
Sbjct: 246 NFGHVFGDQVLRQLAKILQCGIRQSDIPARYGGEEFVVLLPDTNGEAACCLAEKLRSKVA 305

Query: 205 N---SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
               +        +I++T+  G+A      + +  ++  AD+ LY  K+ GRNRVV
Sbjct: 306 EDLVATPPHEQPKTINLTV--GVASYPEDGKTVIDLLRVADRRLYKGKEEGRNRVV 359


>gi|220909032|ref|YP_002484343.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Cyanothece sp. PCC 7425]
 gi|219865643|gb|ACL45982.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7425]
          Length = 842

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 12/184 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDID 137
           S + +    ++  +I   +  D L+GL N    +  L     +         +++F D+D
Sbjct: 380 SLTDITAYRLAQEQILHDALHDALTGLPNRVLLLDRLAQAIHRGRRRSDYQFAVLFLDLD 439

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILA 196
            FK IND+ GH  GD+++  ++ +L +   +   + RLGG+EFA         EA   L 
Sbjct: 440 RFKVINDSLGHMAGDRLLVEIAQRLQLCLRSEDTIARLGGDEFAILVEDIQSVEAVLQLV 499

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             L    E ++        I  T S GIA      E    ++  AD A+Y AK  G+NR 
Sbjct: 500 EQLHA--ELNRPLSLDNQDIFTTASIGIAFNSPQTEQPEELLRDADVAMYRAKSLGKNRH 557

Query: 256 VCFS 259
             FS
Sbjct: 558 EIFS 561


>gi|124515987|gb|EAY57496.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptospirillum rubarum]
          Length = 878

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/195 (28%), Positives = 93/195 (47%), Gaps = 15/195 (7%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LS 130
           + LLL  ++  + +E      +I +L+ ID L+GLLN +A I  L +  EK       ++
Sbjct: 429 VVLLLKDVTAKMERE-----RQIWRLANIDDLTGLLNRTALIERLANEMEKSRRNRGAMA 483

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           + F D D FK IND  GH  GD  +  +  +L         V RLGG+EF       S++
Sbjct: 484 LFFLDFDDFKGINDTLGHSAGDFFLKVIGHRLSGSVRPTDIVARLGGDEFVIVVALESDE 543

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
                A  +  I+  + ++I +  ++  ++S GIA      E +  ++ +AD A+Y AK 
Sbjct: 544 SILAFAQKILDIL-GAPVSIQA-QTVQTSVSVGIATFPRDAESVEDLLRKADIAMYQAKN 601

Query: 250 SGRNRVVCFSDIENN 264
            G+N    F+     
Sbjct: 602 KGKNTWQFFNGEMEE 616


>gi|77404812|ref|YP_345384.1| diguanylate cyclase/phosphodiesterase with phytochrome (GAF) sensor
           [Rhodobacter sphaeroides 2.4.1]
 gi|77390462|gb|ABA81643.1| Phytochrome sensor diguanylate cyclase/phosphodiesterase
           [Rhodobacter sphaeroides 2.4.1]
          Length = 980

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 6/178 (3%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-IVFFDIDYFK 140
           LG    + + +   +   +++L   D L+GL N S     L    +  + ++F D+D FK
Sbjct: 539 LGEAIAAEMAQRTRA--ELARLRHYDPLTGLANRSYLQERLAQDGQSAAALLFIDLDRFK 596

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND+ GH VGD ++  ++  LV        V RLGG+EF              LA  LR
Sbjct: 597 AVNDSMGHGVGDGLLIEVARSLVATVRPHDLVVRLGGDEFVVLCHRLDAAGIVSLAERLR 656

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +++E  Q    +G   HI+ S GIA       +  ++  AD A+Y AKK+G NR   F
Sbjct: 657 QVLE--QPFEVAGRKCHISASIGIAMADSIGDLD-LVRAADIAMYAAKKNGGNRGELF 711


>gi|115353263|ref|YP_775102.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
 gi|115283251|gb|ABI88768.1| diguanylate cyclase [Burkholderia ambifaria AMMD]
          Length = 452

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 106/231 (45%), Gaps = 12/231 (5%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96
           + IA +  + +  L  +  T  + + + L    S+    I + +L   ++  + + LF +
Sbjct: 223 LAIAVLACLTDTTLNLLS-THRFTIGWYLARVFSMFTPGILVCVLAWEVT-MLYQRLFEA 280

Query: 97  YNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +  + + S  D L+G  N S F               E LS++  D+D+FK  ND FGH 
Sbjct: 281 HTMLIRSSARDGLTGAFNRSHFNDHFHTLFLQARRQGEPLSLLMVDVDHFKAYNDAFGHV 340

Query: 150 VGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            GD  +  +++ L      P   V R GGEEFA     +  + A ++A + R+ +    +
Sbjct: 341 KGDACLIAVANALAGAVRRPADIVARYGGEEFAIVLPNTGARGARLVAEEAREAVLRLDL 400

Query: 209 NISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
            + S P+  +++S G A     E      ++  AD ALY AK  GRNRVV 
Sbjct: 401 AMPSSPAGRVSVSVGCATVSAAELSTPDALVEAADAALYRAKDGGRNRVVA 451


>gi|229916734|ref|YP_002885380.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
 gi|229468163|gb|ACQ69935.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
          Length = 559

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 61/196 (31%), Positives = 92/196 (46%), Gaps = 9/196 (4%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGS-YN 126
           + I++ ++ LL  +S SI  E     NR+   S  D L+GL N  A        L    +
Sbjct: 362 IPIAVEVNRLLKTLSWSI--ERIDERNRLQHESLTDPLTGLHNQRALRRWTKERLNDVAS 419

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             LS+   D+D+FK IND +GH  GD+V+                V R GGEEF      
Sbjct: 420 YPLSVFLIDLDHFKSINDTYGHAFGDEVLIEAGQLFTRSVRATDLVTRYGGEEFVFVFPR 479

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
             E  A ++   +R  ++      + G  I +T S GI      E + T++  AD+A+YV
Sbjct: 480 MDEAAAHLVGEKIRDALKRHDFG-TEGTRITVTASIGIETIYEYEDLDTVLRHADRAMYV 538

Query: 247 -AKKSGRNRVVCFSDI 261
            AK +GR+RV  + D+
Sbjct: 539 GAKFNGRDRVAHYHDL 554


>gi|153831702|ref|ZP_01984369.1| ggdef family protein [Vibrio harveyi HY01]
 gi|148872212|gb|EDL71029.1| ggdef family protein [Vibrio harveyi HY01]
          Length = 337

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 5/172 (2%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNF 146
           +  L      + + +  D LS L N  AF S L      N+ +++V  DID+FK  NDN+
Sbjct: 164 ISRLKNQLAEVQKDALFDGLSNLYNRRAFDSDLQMLIDSNQAMTLVMLDIDHFKAFNDNY 223

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD VI  ++ +L       +   R GGEEFA      S +     A+ LR++IE  
Sbjct: 224 GHLFGDTVIKAIARRLQQSCRDGISAYRFGGEEFALIVPNKSLRIGRQYADTLRRMIEKL 283

Query: 207 QIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++    S      IT S G+AE    + + +++ +AD+ LY AK+ GRNRV+
Sbjct: 284 RVRDKRSGSQVQSITASFGVAEYEVGDTLDSLVNKADKQLYEAKQLGRNRVM 335


>gi|146297063|ref|YP_001180834.1| diguanylate cyclase [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410639|gb|ABP67643.1| diguanylate cyclase with GAF sensor [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 557

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 85/185 (45%), Gaps = 9/185 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFFDIDYFKQ 141
           SI  E    Y ++  ++ +D L+G  N       L    E       +SI  FD+D FK+
Sbjct: 373 SIALENSSLYQQMRSMAMVDGLTGAYNRIYLYEVLEKEIETSNKRYPISIALFDVDNFKK 432

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH  GDKV+  +             V R GGEEF          EA  +   +R+
Sbjct: 433 LNDTYGHLFGDKVLQTIVRIAKEKIRKGDIVARYGGEEFVIVFNHLESSEAYKVVERIRR 492

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS- 259
            IEN  I   +     IT+S GI+    H + +  +I  AD A+Y AK SG+N  V ++ 
Sbjct: 493 AIENETIE-DNLIQTRITVSFGISSYPAHADNVKDLIKCADIAMYRAKSSGKNCTVIYNQ 551

Query: 260 DIENN 264
           ++E  
Sbjct: 552 ELEMK 556


>gi|119899788|ref|YP_935001.1| putative signaling protein [Azoarcus sp. BH72]
 gi|119672201|emb|CAL96115.1| conserved hypothetical signaling protein [Azoarcus sp. BH72]
          Length = 726

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
           Y     + E   +   IS  +  D L+ L N   F   L             L+++F D+
Sbjct: 275 YGVARDISERKRAEEIISFQAYHDQLTRLPNRVLFKDRLELAIAQAQRRTGALAVMFIDV 334

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAIL 195
           D FK +ND FGH  GD ++  ++ +L         + RLGG+EF       +  Q+A ++
Sbjct: 335 DRFKLVNDTFGHAEGDMLLRGIAARLAGTLRRGDTLARLGGDEFTVLLPDINGPQDAEVI 394

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A  +   + ++   +S G     T S GIA      +    +   AD A+Y  K+SG+N 
Sbjct: 395 ARKILDSL-SAPFPLSHG-DFRATASIGIALFPRDGDGAEDLTRHADIAMYQVKRSGKNG 452

Query: 255 VVCFS 259
              F 
Sbjct: 453 FRFFD 457


>gi|77918248|ref|YP_356063.1| response regulator [Pelobacter carbinolicus DSM 2380]
 gi|77544331|gb|ABA87893.1| response regulator receiver modulated diguanylate cyclase
           [Pelobacter carbinolicus DSM 2380]
          Length = 470

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/192 (32%), Positives = 89/192 (46%), Gaps = 12/192 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNRI-SQLSRIDCLSGLLNHSAFISSLG-------SYNE 127
           +  S+    +  +I+ E   +  ++   LS  D L+ L NH  + S L         YN 
Sbjct: 276 VIASISGNALENAIIFESMETNKKLLEDLSVRDSLTKLYNHQHYHSRLEDEFSRAQRYNL 335

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            LS +F DID FK IND +GH  GD V+  ++  +  V        R GGEEFA     +
Sbjct: 336 DLSCIFLDIDNFKNINDRYGHLAGDMVLRQIARLISQVIRKSDISARYGGEEFAICLPNT 395

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALY 245
               A  LA  L  +I    I    G   H+T+S G +   +      S +++ AD A+Y
Sbjct: 396 GGVAANELAERLLVMIRELSIQQLKGE--HVTVSIGTSTYSNHNVASYSELLHLADDAMY 453

Query: 246 VAKKSGRNRVVC 257
            AKKSG+NR  C
Sbjct: 454 EAKKSGKNRFCC 465


>gi|332139558|ref|YP_004425296.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549580|gb|AEA96298.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Alteromonas macleodii str. 'Deep ecotype']
          Length = 353

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 70/250 (28%), Positives = 118/250 (47%), Gaps = 25/250 (10%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTP------FYGLEYILV----ENLSLVIISITI 78
           +YF +F  +F+  ++      L Y+ +T        Y  E I+     E++S  +IS   
Sbjct: 106 LYF-VFPLLFLQIIVVRFRPALIYVSVTLAITTFMLYNQENIIAQYSDEHVSRFLISTLC 164

Query: 79  SLLLGYI-----SGSILKELFISYNRISQLSRIDCLSGLLNHSA-----FISSLGSYNE- 127
            + + +I       S  + L  ++ R+ Q +  D L+ L N        F  ++      
Sbjct: 165 FVCVAFIGENFWHQSRKEMLKENFERMRQ-ANTDPLTKLPNRRFLEAVFFEKAMQDPATY 223

Query: 128 -KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             LS V  DID+FK+IND++GH VGD+V+  ++  +     +   V R GGEEF      
Sbjct: 224 FPLSAVVVDIDHFKKINDSYGHDVGDQVLIHVTSLMKEAVRSSDVVARTGGEEFLVLFPH 283

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
           ++  +A  LA  +R++IE     ++   +  IT S G+A       +   + +AD  LY 
Sbjct: 284 ATLTQAVKLAETMRRLIEERPF-VAGDINHPITASFGVATALTDTNLHASLKQADDNLYK 342

Query: 247 AKKSGRNRVV 256
           AK +GRNRV+
Sbjct: 343 AKNAGRNRVM 352


>gi|332533055|ref|ZP_08408925.1| GGDEF family protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037534|gb|EGI73987.1| GGDEF family protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 507

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 8/171 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHP 149
           L +   ++   ++ D L+   N  +    L          +I+  DID+FK++ND FGH 
Sbjct: 339 LQMQIGQLRHDAQTDPLTDTHNRRSLNGLLNQLMFKQTPFAILEIDIDFFKRVNDTFGHD 398

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+ +  L+D +  +      V R+GGEEF       + Q A  +A  LRK +E++ + 
Sbjct: 399 KGDEALKSLTDIIKKLSRKDDIVARIGGEEFVLVLPNENSQSALKIAERLRKTVESTNME 458

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                   ITIS GIA    H   I  +   AD+ALY AK+ GRN+ +   
Sbjct: 459 TIG----FITISIGIATWPEHSNDIDQVYKCADKALYHAKEHGRNQCIVAD 505


>gi|261821440|ref|YP_003259546.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pectobacterium wasabiae WPP163]
 gi|261605453|gb|ACX87939.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pectobacterium wasabiae WPP163]
          Length = 722

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 101/207 (48%), Gaps = 13/207 (6%)

Query: 64  ILVENLSLVIISITISLL-----LGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           +  ++ SLV + +++S+      + Y      + E   +  R+  L+ +D L+GL N + 
Sbjct: 250 VQAKSGSLVPVELSVSMWEDNDNVSYGAILRDITERRRNEERLFLLAHMDPLTGLANRTL 309

Query: 118 FISSLGSY--NEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
             S+L +   NE  + I+  D+D FK +ND+ GH  GD ++  ++ ++     +   V R
Sbjct: 310 LTSNLETALKNEPAVCIMMVDLDGFKDVNDSLGHSSGDDILVHVAKKIKATVRSGDVVAR 369

Query: 175 LGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEP 232
           +GG+EFA    G S ++ A  +A  +  I E SQ  I     I+I+ S G          
Sbjct: 370 MGGDEFALLFPGLSDKKVAGKIAEQI--IHEISQAMIIDDHQINISASIGAVLYPEYGVT 427

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  ++  AD ALY AK  GRN    F+
Sbjct: 428 VQDLLTSADLALYQAKSEGRNCYRFFT 454


>gi|225619253|ref|YP_002720479.1| GGDEF domain-containing protein [Brachyspira hyodysenteriae WA1]
 gi|225214072|gb|ACN82806.1| GGDEF domain protein [Brachyspira hyodysenteriae WA1]
          Length = 331

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 60/184 (32%), Positives = 92/184 (50%), Gaps = 16/184 (8%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           ++K+L    + +   S ID L+GL N   F       +     Y   +SI+F D+D+FK 
Sbjct: 148 VIKKLMKEIDTLHAQSTIDPLTGLFNVRYFNKIIEEEVERAKRYKYSISIIFMDLDHFKD 207

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVF------GTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           IND +GH  G+ V+  +   L                 R GGEEF      + +++A I+
Sbjct: 208 INDIYGHDCGNVVLHEIGRLLSNTSENINMLRKSDIAIRYGGEEFIVICPNTKKEQAYIV 267

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRN 253
           A  +RK +E  + +  S   I++T+S GIAE     K+PI+  I  AD A+Y AK  GRN
Sbjct: 268 AERIRKTVEKKRFSYESTI-INVTVSVGIAEHKGTSKKPIAETIKNADTAMYEAKHLGRN 326

Query: 254 RVVC 257
           +V+ 
Sbjct: 327 KVIL 330


>gi|149176926|ref|ZP_01855535.1| probable response regulatory protein [Planctomyces maris DSM 8797]
 gi|148844181|gb|EDL58535.1| probable response regulatory protein [Planctomyces maris DSM 8797]
          Length = 691

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/191 (29%), Positives = 96/191 (50%), Gaps = 13/191 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---------GSYN 126
           I ++ +   +S S+  +    YN +   + +D L+ + N     + L             
Sbjct: 360 IGVTEIFRDLSRSL--KRPKEYNDLKLAASLDALTSVANRGELETQLAIMLSRIQKEQNP 417

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           E LS++F D D+FK IND++GH  GD+V+  L+        +   VGR GGEEF      
Sbjct: 418 EPLSLIFIDADHFKNINDSYGHSTGDEVLVELARLFQHETYSGELVGRYGGEEFVILCPE 477

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
           ++ + A   A  LR  + N ++   S  +I +T S G+++    + + ++ +RAD ALY 
Sbjct: 478 TALEHAVKKAERLRLAVSNLKMENQS--NIRVTASFGVSQYEPGDSLESLFHRADSALYQ 535

Query: 247 AKKSGRNRVVC 257
           AK++GRN+V  
Sbjct: 536 AKETGRNKVRA 546


>gi|90419209|ref|ZP_01227119.1| GGDEF domain [Aurantimonas manganoxydans SI85-9A1]
 gi|90336146|gb|EAS49887.1| GGDEF domain [Aurantimonas manganoxydans SI85-9A1]
          Length = 271

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 88/201 (43%), Gaps = 17/201 (8%)

Query: 71  LVIISITISLLLGYISGSILKE---------LFISYNRISQLSRIDCLSGLLNHSAFISS 121
           +V +   + L+L  I   + ++         L      + Q +  D L+GL N   F   
Sbjct: 58  VVALGTGLFLILPTIRSQLREQGKLRSLAGTLEQRSQHLEQAALTDPLTGLRNRRCFDRM 117

Query: 122 LGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
              Y          + ++ FD+D FK +ND +GH VGD+V+  ++  L         V R
Sbjct: 118 FEEYVVAFDRVGRPVGLLLFDLDKFKAVNDTYGHDVGDEVLKVVAGCLTDFARHRDVVAR 177

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
           LGGEEFA      S       A  +R+ I    I +     +  T+S G+A     +  +
Sbjct: 178 LGGEEFAIIVTNMSAPGLVSFAERIRQAISGLTIRVGD-VKLRTTVSVGLASSEPGDGCA 236

Query: 235 TIIYRADQALYVAKKSGRNRV 255
            I  RAD  LY AK++GRNRV
Sbjct: 237 AIFKRADVNLYKAKQAGRNRV 257


>gi|299069890|emb|CBJ41172.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum CMR15]
          Length = 505

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 101/234 (43%), Gaps = 21/234 (8%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           + + ++  + I +I+  +     + G          +V++   + + +  +    L+   
Sbjct: 270 YPLILSVGLAIDDIYAEWRQRAWWIG---------GIVLLLDAVLIGMSILFARQLRRRM 320

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFG 147
            +  +++ L+  D L+GL    A  ++L +  +        L+++  D+D FK  ND +G
Sbjct: 321 EAEQKLAWLANTDGLTGLGTRRALDAALEAEWQRANRQCQPLAVLMIDVDEFKHYNDRYG 380

Query: 148 HPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  GD V+  ++  +   +     F GR GGEEF      +    A  +A  +R  +  +
Sbjct: 381 HAAGDTVLRTVARCVNDSIRRPGDFAGRYGGEEFCVLLPDTDLAGAQRVAEVIRATVLAA 440

Query: 207 QINISSGPSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNRVV 256
               +      +T+S G A    +   S     +++RAD  LY AK  GRN V+
Sbjct: 441 GEPNAGSTHGRLTVSIGAAAHDGRADTSDTPARLLHRADLQLYEAKSGGRNAVM 494


>gi|256158054|ref|ZP_05455972.1| GAF/GGDEF domain-containing protein [Brucella ceti M490/95/1]
 gi|256252991|ref|ZP_05458527.1| GAF/GGDEF domain-containing protein [Brucella ceti B1/94]
          Length = 364

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 91/192 (47%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS--- 130
           L++G I+     I  +   +  R+   +  D L+ L N       ++   S  + LS   
Sbjct: 170 LMVGQIAVELSMIAVDTAQTQERLVSQAMHDDLTQLPNRRYIGKLLTQKKSARDGLSRDG 229

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSS 188
            ++  D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF      G+S
Sbjct: 230 FLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTS 289

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++  I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK
Sbjct: 290 KEQTDIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAK 348

Query: 249 KSGRNRVVCFSD 260
             G+NR   F +
Sbjct: 349 SKGKNRFEYFEE 360


>gi|254502187|ref|ZP_05114338.1| hypothetical protein SADFL11_2225 [Labrenzia alexandrii DFL-11]
 gi|222438258|gb|EEE44937.1| hypothetical protein SADFL11_2225 [Labrenzia alexandrii DFL-11]
          Length = 1020

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 90/186 (48%), Gaps = 12/186 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            + ++     ++  L+R D L+GL N           ++    +   L+I F D+D FK 
Sbjct: 561 DITKMKAHERQLEHLARYDRLTGLPNRVLLADNMQQAMARARRHGHTLAIAFIDLDGFKA 620

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH  GD+++  ++ +L  V  T   + R+GG+EF A      ++++ +  + L +
Sbjct: 621 VNDTYGHAAGDELLVSVAHRLTKVLRTEDTLARIGGDEFVAIITDLPDEKSCV--STLNR 678

Query: 202 IIENSQINISSG-PSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCF 258
           I++ +      G  +  ++ S G+      E      +  +ADQA+Y AK SGRN+   F
Sbjct: 679 ILDAASKEFKLGAATASVSASIGVTFYPQTEEIDGDQLERQADQAMYEAKISGRNQYKFF 738

Query: 259 SDIENN 264
              ++ 
Sbjct: 739 DPEQDR 744


>gi|323220721|gb|EGA05165.1| cellulose synthesis regulatory protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
          Length = 185

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 10/178 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDN 145
           +F+  N +   +  D L+ L N  A                +  S++  D+DYFK +ND 
Sbjct: 2   MFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAKRYREARQPFSVIQLDLDYFKSVNDR 61

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GD+V++  +  +          GR+GGEEF     G+++ +A  +A  +R+ I +
Sbjct: 62  FGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEFCIVLPGATKTQALQIAERIRQRIND 121

Query: 206 SQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            +I ++   ++ I+ S GI  AE         +   AD+ LY AK+SGRNR+ C SD 
Sbjct: 122 KEILVTKSTTLRISASMGISSAEEYGDYDFEQLQSLADKRLYYAKQSGRNRI-CASDA 178


>gi|119899139|ref|YP_934352.1| hypothetical protein azo2849 [Azoarcus sp. BH72]
 gi|119671552|emb|CAL95465.1| conserved hypothetical membrane protein [Azoarcus sp. BH72]
          Length = 620

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 9/179 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           E       +   S  D ++GL N             S       L+++  D+DYFK +ND
Sbjct: 435 EAKRLTETLRDSSLRDAMTGLNNRRFLEEYMDTLVASARRRRIPLAVLVLDLDYFKVVND 494

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           ++GH  GD V+  L+  L         V R GGEEF      +  + A  +A ++R  +E
Sbjct: 495 SYGHDAGDAVLKALAGVLKRTVRASDMVIRFGGEEFLIVLQEADAEAALKVAENIRSAVE 554

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             ++ + +G  +  TIS G++      +     I  AD ALY AK++GRN+VV F+   
Sbjct: 555 QMRVQV-AGAVLQKTISIGLSMFPDDSDTFWQAIKFADVALYRAKENGRNQVVRFTPDM 612


>gi|70731672|ref|YP_261414.1| sensory box protein [Pseudomonas fluorescens Pf-5]
 gi|68345971|gb|AAY93577.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas
           fluorescens Pf-5]
          Length = 819

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 94/211 (44%), Gaps = 18/211 (8%)

Query: 65  LVENLSLVIISITISLL----LGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNH 115
           L++ L    +S+T+        G +SG++L    ++  R     +S  +  D L+GL N 
Sbjct: 326 LIQRLDGSTVSVTLVGAPIRNAGKVSGTVLVLHDMTQERQYIANLSWQATHDALTGLANR 385

Query: 116 SAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
             F   L      L       +++F D+D FK +ND  GH  GD+++  +   L      
Sbjct: 386 REFEFRLEQALHSLIRQPARHALMFLDLDQFKLVNDTCGHAAGDELLRHICALLQSGLRE 445

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
              + RLGG+EF       S + A  +A  LR+ ++N    +  G     T+S G+    
Sbjct: 446 GDTLARLGGDEFGILLENCSPEAAEKIAEGLRQTVQNLHF-VWKGRPFVTTVSIGLVHIA 504

Query: 229 H-KEPISTIIYRADQALYVAKKSGRNRVVCF 258
                +   +  AD A Y+AK+ GRNRV  +
Sbjct: 505 QTPTTLEASLRAADMACYMAKEKGRNRVQVY 535


>gi|303241210|ref|ZP_07327717.1| diguanylate cyclase/phosphodiesterase [Acetivibrio cellulolyticus
           CD2]
 gi|302591221|gb|EFL60962.1| diguanylate cyclase/phosphodiesterase [Acetivibrio cellulolyticus
           CD2]
          Length = 565

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 80/180 (44%), Gaps = 9/180 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQINDNF 146
           +L  S   + + +  D L+GL N    +  +      S N K S +F D+D FK +ND  
Sbjct: 125 KLKKSMKELKKFAYYDFLTGLPNRRFMLEKIEDILKTSNNIKFSFLFLDLDNFKMVNDIM 184

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIEN 205
           GH  GD+++  ++ +L         VGRLGG+EF        S+      A  +  +   
Sbjct: 185 GHDYGDQLLKNIASELKNCMDESDIVGRLGGDEFLILLSNIYSKDTIENKAKSIMNLFSR 244

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            Q NI  G    IT S G+         + T+   AD A+Y AK+ G+N  + F    N+
Sbjct: 245 -QWNIC-GKEFFITASIGMVIYPFDGTDLQTLYKNADTAMYQAKEKGKNCFLFFCQDMND 302


>gi|255022428|ref|ZP_05294414.1| ggdef domain protein [Listeria monocytogenes FSL J1-208]
          Length = 357

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 113/258 (43%), Gaps = 24/258 (9%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL 69
           +I     K LE F        + +F    IA    + N+ L       F+          
Sbjct: 114 TITALFGKRLEKFK------IWGVFILNIIACSFVVINLHLILAREAHFW---------- 157

Query: 70  SLVIISITISLLLGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSAFISS----L 122
             + I + I+L++G +S  ++  +  S   + +  Q S +D L+ L N   F       +
Sbjct: 158 INMTIFVLIALVIGAVSAGLMSNMIKSKQLFQKYEQDSTLDYLTKLSNVRQFDEKINHVM 217

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
            + + +++++  DIDYFK IND +GH  GD ++  L+  L           R GGEEF+ 
Sbjct: 218 DAGSRQVTLMLIDIDYFKNINDTYGHDAGDAILKQLAVILKASTTDGSEAFRNGGEEFSI 277

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRAD 241
             L  S +E   +A  +RK  E     I  G  + ITIS G++        S  +   AD
Sbjct: 278 VLLDCSIEEGNKVAEQVRKETEEQDFVIPGGQIVKITISVGVSSSKDGANTSEGLFKSAD 337

Query: 242 QALYVAKKSGRNRVVCFS 259
           +ALY AK +GRNRV    
Sbjct: 338 EALYKAKLTGRNRVCIAD 355


>gi|118580910|ref|YP_902160.1| GAF sensor-containing diguanylate cyclase [Pelobacter propionicus
           DSM 2379]
 gi|118503620|gb|ABL00103.1| diguanylate cyclase with GAF sensor [Pelobacter propionicus DSM
           2379]
          Length = 355

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 9/173 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +    QL+  D L+GL N   F                  S++  D+D FK  ND  GH 
Sbjct: 180 HEETHQLAINDSLTGLNNRRYFDKVLPQEYERAHREGLPFSLMMIDVDNFKLFNDTHGHH 239

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII-ENSQI 208
           +GD+++A +   L     +  F  R GGEEF      +  + A  +A  +R+ +   S+ 
Sbjct: 240 LGDRILATIGRVLRKTLRSIDFAFRYGGEEFVVILPETDLESAHKVAERIRQRVMAESRK 299

Query: 209 NISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSD 260
            + +     +T+S GI+        S T++  ADQ LY AK++GRNRV+   D
Sbjct: 300 LLRNPQDRPVTVSVGISCYPRDAACSITLLAMADQLLYQAKRTGRNRVLVAED 352


>gi|313682795|ref|YP_004060533.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM
           16994]
 gi|313155655|gb|ADR34333.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM
           16994]
          Length = 476

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/168 (33%), Positives = 81/168 (48%), Gaps = 10/168 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPV 150
           +I + +  D L+ L N   F   +           + K SI+ FD+D FK++ND  GH  
Sbjct: 302 KIEKQAITDYLTDLYNRRYFTGRMEEEIAKTKRNKHAKTSIMMFDLDKFKRVNDTMGHLA 361

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD VI   +D +          GR+GGEEFA     +  + AAI A  +R+ + N+ + +
Sbjct: 362 GDAVIKKFADIIKNNLRVSDIAGRIGGEEFALILPDTDIKSAAITAERIREEVSNTTV-V 420

Query: 211 SSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             G  IH T+S G+ A          +  RAD ALY AK+ GRN V  
Sbjct: 421 YEGKFIHFTVSIGLTALSPLDLSADCVFSRADIALYSAKEHGRNNVQI 468


>gi|163748687|ref|ZP_02155940.1| GGDEF domain protein [Shewanella benthica KT99]
 gi|161331797|gb|EDQ02601.1| GGDEF domain protein [Shewanella benthica KT99]
          Length = 879

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 85/199 (42%), Gaps = 16/199 (8%)

Query: 76  ITISLLLGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------- 125
           +  +  L  ++  + KE      +  ++   +  D L+GL N   F+  L          
Sbjct: 422 VVRTRALAMLNQDLEKEVAQRRKAEEQLVYDASHDSLTGLPNRGMFMERLTQAVKHIRRH 481

Query: 126 -NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
             ++  ++F D+D FK IND  GH  GD+ +   S +L +       +GR+GG+EF    
Sbjct: 482 GRDRFGLLFIDLDRFKLINDTLGHQQGDRFLVETSRRLRLCIRDNDTLGRIGGDEFVILL 541

Query: 185 LGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRAD 241
                  +A  +A  +    E S+    +  S     S GIA  C+   +   +++  AD
Sbjct: 542 DSIKGTHDAKEVAERI--FTELSRPYELANQSFTSGASIGIAFSCNHKSDTAESLLRDAD 599

Query: 242 QALYVAKKSGRNRVVCFSD 260
            A+Y AK  G+   V F D
Sbjct: 600 AAMYQAKSKGKGCYVIFDD 618


>gi|86748936|ref|YP_485432.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
 gi|86571964|gb|ABD06521.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
          Length = 777

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 12/187 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKL-SIVFFDIDYF 139
            + E   +  RI  L+R D L+ L N   F   +             +L +++F D+D F
Sbjct: 321 DITERRNAEARIVHLARYDELTTLPNRVQFRDEIERILSLEHGHGKTRLSALLFIDLDQF 380

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           KQ+ND  GHP+GD+++  ++D+L  +     FV R GG+EF        S+++AA+LA  
Sbjct: 381 KQVNDTLGHPLGDRLLCAVADRLRDMLRPEDFVARFGGDEFVVFQQNVRSDEDAAVLARR 440

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + + + +    +     + I  S GIA          ++  AD ALY AK  GR     F
Sbjct: 441 IVERLSDR--YLIEHHVVEIGASIGIAMTSPGIRADILLKNADMALYRAKADGRGTFCFF 498

Query: 259 SDIENNT 265
            +   +T
Sbjct: 499 REEMAHT 505


>gi|331014505|gb|EGH94561.1| GGDEF domain protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 528

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 89/205 (43%), Gaps = 20/205 (9%)

Query: 81  LLGYISGSILKE---------LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124
           L+ +I   I  E         L      +  ++  D L+GL N   F             
Sbjct: 301 LIKHIHSRIRAEDQLLESQAALIQLNQHLEFIASEDKLTGLANRRRFDQFLDVEFKRARR 360

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAA 183
               LS++  D D+FK+ ND+FGH  GD+ +  L+  +      P     R GGEE A  
Sbjct: 361 ERNMLSLILMDADHFKRYNDHFGHLAGDECLVALARLVEQCIRRPGDVAARYGGEEIAVV 420

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRA 240
             G+ E  A  +A ++ + I + QI   + P   +T+S G+A             +I  A
Sbjct: 421 LPGTDEASARQVAENILQAIRDEQITHPASPFGIVTVSLGVATVVGSNRQISQRGLIELA 480

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D+ALY AK  GRNRV   S+I  NT
Sbjct: 481 DRALYAAKSQGRNRVNVASEIAFNT 505


>gi|323487747|ref|ZP_08093005.1| YhcK [Planococcus donghaensis MPA1U2]
 gi|323398481|gb|EGA91269.1| YhcK [Planococcus donghaensis MPA1U2]
          Length = 370

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 111/231 (48%), Gaps = 15/231 (6%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
           FF I ++ ++F   I      +T    L  I    +   I  +T  + +GYI  +  + L
Sbjct: 141 FFMIILSNIVFSVIISYLVKDVTVLKSL--IFSYWMVSTIGGLTSIVFVGYIRKT--QYL 196

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
            + Y +    S  D L+GL N   F       IS+    NE+LS++  DID+FK +ND +
Sbjct: 197 LMKYEK---DSTTDFLTGLNNVRQFDSIWNTLISNAAEKNERLSLLMIDIDHFKHVNDTY 253

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GHP+GDK++  L   L     +   V R GGEEF+        Q A  +A  +R  +E  
Sbjct: 254 GHPIGDKILVELGKVLKNSTRSFDVVSRNGGEEFSVMLPDCPHQYAIEIAERIRIAVEQH 313

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           +  IS    IHIT+S G+A           I+  AD  LY AK++GRNR+ 
Sbjct: 314 KFEISLKEEIHITVSIGVATYPETVSDTVQIVDVADDCLYTAKRTGRNRIC 364


>gi|301382183|ref|ZP_07230601.1| GGDEF domain protein [Pseudomonas syringae pv. tomato Max13]
 gi|302061899|ref|ZP_07253440.1| GGDEF domain protein [Pseudomonas syringae pv. tomato K40]
          Length = 528

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 89/205 (43%), Gaps = 20/205 (9%)

Query: 81  LLGYISGSILKE---------LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124
           L+ +I   I  E         L      +  ++  D L+GL N   F             
Sbjct: 301 LIKHIHSRIRAEDQLLESQAALIQLNQHLEFIASEDKLTGLANRRRFDQFLDVEFKRARR 360

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAA 183
               LS++  D D+FK+ ND+FGH  GD+ +  L+  +      P     R GGEE A  
Sbjct: 361 ERNMLSLILMDADHFKRYNDHFGHLAGDECLVALARLVEQCIRRPGDVAARYGGEEIAVV 420

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRA 240
             G+ E  A  +A ++ + I + QI   + P   +T+S G+A             +I  A
Sbjct: 421 LPGTDEASARQVAENILQAIRDEQITHPASPFGIVTVSLGVATVVGSNRQISQRGLIELA 480

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D+ALY AK  GRNRV   S+I  NT
Sbjct: 481 DRALYAAKSQGRNRVNVASEIAFNT 505


>gi|254481269|ref|ZP_05094514.1| GGDEF domain protein [marine gamma proteobacterium HTCC2148]
 gi|214038432|gb|EEB79094.1| GGDEF domain protein [marine gamma proteobacterium HTCC2148]
          Length = 390

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILV--ENLSLVIISITISLLLGYISGSILKELFISYNR- 99
           + IA   L  +  TP    E  +    NL  +I     S     ++   L  + I Y + 
Sbjct: 152 MIIAYAALLMVVGTPIALYEVAIGGDSNLGQIIAFGAHSWAYVLVAVGFLASVLIEYQQH 211

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S L+  D L+ LLN      +L         +    S +  DIDYFK++ND+FGH  GD
Sbjct: 212 LSHLATEDPLTRLLNRRGLQDALRISIAHARRHGLPTSAIMIDIDYFKRVNDSFGHETGD 271

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            VI  ++  +  +      V R GGEEF      +    A ILA  +R+ +    + +  
Sbjct: 272 HVIQLVASMIERLCRESDVVARTGGEEFLIILANTDSASARILAERVRQAVGERPL-VVD 330

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              I +TIS G+A    +  +  +   ADQA+Y+AK+ GRNRV 
Sbjct: 331 QHRIPVTISLGVASASGEFNLDELSQEADQAMYLAKRGGRNRVA 374


>gi|56477083|ref|YP_158672.1| hypothetical protein ebA2924 [Aromatoleum aromaticum EbN1]
 gi|56313126|emb|CAI07771.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 948

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 91/190 (47%), Gaps = 10/190 (5%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFD 135
             ++ + + E   + +R+   +  D L+GL N +  +  L     +       ++++F D
Sbjct: 492 AVLAFNDVTEALAATSRLEHEATHDTLTGLPNRALLLDRLHHALAQADRRCTMIALLFVD 551

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AI 194
           +D FK+IND+ GH  GD+V+  ++++L         V R GG+EF        +Q A A 
Sbjct: 552 LDRFKRINDSLGHHAGDRVLEIVAERLTAAVRGGDTVARWGGDEFVVLMENLDDQPAVAA 611

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253
           +A+ + +++E   +    G ++ ++ S GI           T++  AD+A+Y AK+ G  
Sbjct: 612 IAHKMIELLER-DVEAEPGTNLALSCSIGIGVGPRDSADAGTLLLMADRAMYRAKRQGGG 670

Query: 254 RVVCFSDIEN 263
               +S   N
Sbjct: 671 SYTFYSPEMN 680


>gi|206563014|ref|YP_002233777.1| putative cyclic-di-GMP signaling protein [Burkholderia cenocepacia
           J2315]
 gi|198039054|emb|CAR55017.1| putative cyclic-di-GMP signaling protein [Burkholderia cenocepacia
           J2315]
          Length = 353

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 12/179 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+GL N       L +   +       LS++  D+D FK  N
Sbjct: 160 QQLLEANLELRRLTHSDGLTGLSNRRYLDEYLAAEWRRGTRERSELSLLMIDVDNFKLYN 219

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD V+  ++  +    G +     R GGEEFA     +S   A +L   +R  
Sbjct: 220 DTYGHVSGDSVLKQIASTIERCLGQSGDLAARFGGEEFAVVMPATSPGAARLLGEKIRLA 279

Query: 203 IENSQINISSGPS--IHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +E  ++  +   +    +TIS G A        P + +I  AD+ALY AK  G+NRV  
Sbjct: 280 VEALRLRHAHSSTGNHTVTISIGGASIVPAPGLPTTLLIEAADRALYRAKHEGKNRVEI 338


>gi|159897975|ref|YP_001544222.1| diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159891014|gb|ABX04094.1| diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 1774

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 9/167 (5%)

Query: 99   RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
            ++ +L+  D L+ + N   F              +  LS +  D+D+FK++ND++GH VG
Sbjct: 1608 QVQRLAITDSLTQVSNRRHFFELAERQWILTCSSDHPLSAMMLDVDHFKRVNDSYGHSVG 1667

Query: 152  DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            D V+  ++D           +GR GGEEFA     +    A  +A  LR  I N  IN  
Sbjct: 1668 DLVLRTVADLCRANLRPSDLLGRYGGEEFAILLPDTDVSAALTIAERLRVAIANHVINHE 1727

Query: 212  SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               SI++T+S G+         +++++ RAD+ LY+AK++GR+RV  
Sbjct: 1728 Q-ASINLTVSIGVTGLSKDDNSVASLLDRADRGLYIAKETGRDRVTM 1773


>gi|71908454|ref|YP_286041.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71848075|gb|AAZ47571.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 714

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E     + +   +  D L+GL N +     L          + K+++ F D+D FK 
Sbjct: 273 DITERHRYQSVLQHQATHDPLTGLPNRNLLEDRLAQAVQLARRKSSKVALAFVDLDNFKV 332

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLR 200
           IND+ GH  GD+++  +S +L         V R GG+EF       +S  +   L   + 
Sbjct: 333 INDSLGHAAGDQLLIEISSRLRAALRGLDTVARYGGDEFVLILGEQTSMADTMHLLERV- 391

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++         G  + I  S G++      + +  ++  AD A+Y AK+SG+ +   ++
Sbjct: 392 -LVSIQAPLALEGHGLRINCSIGVSVFPDDAQDLDGLLRVADVAMYHAKESGKGQYCFYT 450

Query: 260 DIENNTC 266
              N   
Sbjct: 451 RDLNQAA 457


>gi|117928688|ref|YP_873239.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidothermus cellulolyticus 11B]
 gi|117649151|gb|ABK53253.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidothermus cellulolyticus 11B]
          Length = 949

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 91/190 (47%), Gaps = 11/190 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           ++   + E      ++++ +  D L+GL N + F + +            +++++F D+D
Sbjct: 465 LNTRDVSERKELERQLTRQAFSDPLTGLANRALFANRVEHALSERSRQPGEVAVLFLDLD 524

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILA 196
            FK +ND  GH VGD ++  ++D+L         V RLGG+EFA   +G  +E     +A
Sbjct: 525 GFKGVNDAQGHAVGDHLLTLVADRLRRCVRPSDTVARLGGDEFAILVVGPQAEAHGVDVA 584

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             +++ +   +  + SG  + +  S GIA      E +  ++  AD A+Y AK S +   
Sbjct: 585 ERVQRALA--EPFLLSGREVTLAASIGIAVTDDGTETVDQLLRNADLAMYRAKSSRKGTY 642

Query: 256 VCFSDIENNT 265
           V F    ++ 
Sbjct: 643 VRFRTEMHDA 652


>gi|261253841|ref|ZP_05946414.1| sensory box/GGDEF family protein [Vibrio orientalis CIP 102891]
 gi|260937232|gb|EEX93221.1| sensory box/GGDEF family protein [Vibrio orientalis CIP 102891]
          Length = 582

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 11/184 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +LS ID L+ + N   F   L           + ++++  DIDYFK  N
Sbjct: 399 QKLEEANQELERLSFIDSLTQIANRRRFDEQLDILWHVHIREQQPMTVMLCDIDYFKGFN 458

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+ +  +++    V   +   V R GGEEFA     ++ + A  +A  + + 
Sbjct: 459 DFYGHQRGDEALIKVAEVFKKVLPRSSDSVARYGGEEFAFILPNTTAEGAKKVAQRIHQG 518

Query: 203 IENSQINI-SSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +    +   SS  S  +T S G+        +   +I+  AD ALY AK +GRN+     
Sbjct: 519 VAELALAHNSSNVSDIVTASIGLVSLVPQPLDNSESIVALADSALYQAKANGRNQTCVHH 578

Query: 260 DIEN 263
             EN
Sbjct: 579 TSEN 582


>gi|288941576|ref|YP_003443816.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
 gi|288896948|gb|ADC62784.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
          Length = 529

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 101/253 (39%), Gaps = 19/253 (7%)

Query: 23  SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL----EYILVENLSLVIIS-IT 77
           +P + M+   +  + +I   I +A +   +  L    G+     ++ +   SL+    I 
Sbjct: 267 APKSLMMNDVLNSAFWIVGTIVLAFVLGLFFALRLTRGILCSIRHLDIAARSLLAGRPIE 326

Query: 78  ISLLLGYISGSILKELFISYN---RISQLSRIDCLSGLLNHSAFISSL-------GSYNE 127
           + ++      SI + L  +      I   +  D L+GL N   F   L         +++
Sbjct: 327 LPVIPFREVESIGEALLEAERGFISIRHRADHDGLTGLANRRCFDERLRAEWPHAQRHHQ 386

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALG 186
            L+++  DID+FK  ND  GH  GD  +  ++  L      P   V R GGEEF      
Sbjct: 387 PLALLMIDIDHFKAYNDRLGHLAGDVCLKRIAATLQTHMRRPYDIVARYGGEEFVCLLPE 446

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIAE--RCHKEPISTIIYRADQA 243
                A   A  +R  +E   I      +  I T+S G+              +  ADQ 
Sbjct: 447 CDLGGALERAESMRAAVEELAIPHPDPGTAGIMTLSIGVTVINASPSNTPEAALRMADQF 506

Query: 244 LYVAKKSGRNRVV 256
           LY AK +GRN++ 
Sbjct: 507 LYRAKHAGRNQIR 519


>gi|188492292|ref|ZP_02999562.1| AdrA protein [Escherichia coli 53638]
 gi|188487491|gb|EDU62594.1| AdrA protein [Escherichia coli 53638]
          Length = 236

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 7   LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAE 66

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 67  HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 126

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +   ++
Sbjct: 127 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL 186

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G+A    +       +  AD ALY AKK+GRNR   
Sbjct: 187 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 234


>gi|124268042|ref|YP_001022046.1| sensory box/response regulator [Methylibium petroleiphilum PM1]
 gi|124260817|gb|ABM95811.1| sensory box/response regulator [Methylibium petroleiphilum PM1]
          Length = 754

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 30/199 (15%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFK 140
             + +  ++ ++I  L+  D L+GL N    I             N ++ ++  D+D FK
Sbjct: 257 QDVTDRRVAEDKIRHLANFDALTGLPNRRQLIWRAERAMEQAKRLNHQVGLLLIDLDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-------------------FVGRLGGEEFA 181
            IND  GH  GD+++  +S +L                            VGRLGG+EF 
Sbjct: 317 VINDTLGHGAGDELLMEVSRRLRSCVRHSDQVVETGIDSVGLRAHRSLEAVGRLGGDEFV 376

Query: 182 AAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYR 239
           A       +Q+A  +A  + +++         G    +T S GIA        ++ ++  
Sbjct: 377 ALLPEVDADQDAERVALRILEVMREPIF--VGGQECFVTASVGIALFPRDGASVADVLRN 434

Query: 240 ADQALYVAKKSGRNRVVCF 258
           AD A+Y AK +GRN    +
Sbjct: 435 ADVAMYSAKAAGRNAASLY 453


>gi|225849118|ref|YP_002729282.1| ggdef domain protein [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644419|gb|ACN99469.1| ggdef domain protein [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 826

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 8/161 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +LS  D L+ L N    I             +  + ++  D+D FK++ND +GH VGD 
Sbjct: 662 KELSLKDSLTNLYNRRYIIEFFTKEIGKAKRLDYNIGVLVIDVDNFKKLNDTYGHLVGDL 721

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  +S+  +        VGR GGEEF     GS E+    +A  +RK + +  I     
Sbjct: 722 CLKKVSNVFLNSVREMDIVGRWGGEEFIVILPGSDEESTYQIAERIRKKVSSEVIFTPDN 781

Query: 214 PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
             ++IT+S G+A      + +  +I  AD+ LY AKKSG+N
Sbjct: 782 KILNITVSIGMAVYPKDGDNLDDLIKVADEKLYQAKKSGKN 822


>gi|218458040|ref|ZP_03498131.1| putative sensory box/GGDEF family protein [Rhizobium etli Kim 5]
          Length = 242

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 8/177 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQIN 143
           + ++    +   +++  D L+ L N  AF   L +  +        +++  DID FK+IN
Sbjct: 27  MDQVRKELDEYKRIANTDSLTRLSNRRAFDDRLAAVFDNPGMRPVTALLLADIDNFKKIN 86

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHPVGDK++A ++  +       +FV R GGEEFA    G++ +E + +A  +R+ +
Sbjct: 87  DTYGHPVGDKILATVASVIRSNVRRDVFVARAGGEEFALIIEGNTAEEVSAIAERIRRTL 146

Query: 204 ENSQINISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           E +    S     +  IT+S GI    + E    +  + D ALY AK +GRN +V +
Sbjct: 147 ETTPFKNSRTRVNYGPITVSIGICMASNAEDAGELYSKTDIALYGAKNAGRNCIVLY 203


>gi|77461371|ref|YP_350878.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens
           Pf0-1]
 gi|77385374|gb|ABA76887.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Pseudomonas fluorescens Pf0-1]
          Length = 1248

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + +  L  +  ++   +  D L+GL N + F S L            + +++F D+D FK
Sbjct: 792 ADISSLKHAQAKLDYQAHHDPLTGLPNRTLFESRLLTALNSQQENGGQGAVLFLDLDRFK 851

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
            IND+ GHPVGD ++  ++ +L         V RLGG+EF     G  +  +A  +A  L
Sbjct: 852 HINDSLGHPVGDLLLKGIAVRLKEQLRDIDTVARLGGDEFIILLPGLQQPGDADNIATKL 911

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                      +      I+ S G +        ++T+I  AD A+Y +K  GRNRV  +
Sbjct: 912 LNCF--GAPFQAGEHEFFISASIGTSLYPRDGCDVATLIKNADAAMYRSKAKGRNRVESY 969

Query: 259 S 259
           +
Sbjct: 970 T 970


>gi|83749389|ref|ZP_00946384.1| Hypothetical Protein RRSL_00679 [Ralstonia solanacearum UW551]
 gi|83723966|gb|EAP71149.1| Hypothetical Protein RRSL_00679 [Ralstonia solanacearum UW551]
          Length = 562

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 8/164 (4%)

Query: 99  RISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R++  +  D L+GL N       +  L   ++  S V  D+D+FK+IND  GH VGD+V+
Sbjct: 381 RLNHEALTDPLTGLYNRRGVADALRLLAGRHQPFSAVTLDVDHFKRINDRDGHDVGDQVL 440

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  +          GR+GGEEF      ++ + A   A  LR+ +E           
Sbjct: 441 KHIAALIREQARHDDITGRIGGEEFILLLPDATPEGAFKTAERLRRAVEARPNPTGQ--- 497

Query: 216 IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             +T+S G+A+     E +  ++  +D ALY AK+SGRNR V +
Sbjct: 498 -VVTVSLGVADYPGASEEVDAVLKLSDLALYQAKRSGRNRTVLY 540


>gi|299136568|ref|ZP_07029751.1| diguanylate cyclase [Acidobacterium sp. MP5ACTX8]
 gi|298601083|gb|EFI57238.1| diguanylate cyclase [Acidobacterium sp. MP5ACTX8]
          Length = 505

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/202 (30%), Positives = 97/202 (48%), Gaps = 14/202 (6%)

Query: 70  SLVIISI----TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-- 123
           S V++SI     ++++L   +    + L  +  R+++L   D L+G  N  AF   +   
Sbjct: 292 SAVVLSIGCYCAMNIILHERAIEAEESLAHANGRLTELVSTDGLTGAPNRRAFDQRIDVE 351

Query: 124 -----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGG 177
                 + + LS++  D+D+FKQ+ND  GH  GD  +  ++  L   +     F+ R GG
Sbjct: 352 VRAAHRFAQPLSLLLIDVDHFKQLNDAKGHLAGDDCLVQIAQALHRALPRATDFLARYGG 411

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--T 235
           EEF      +    AA +A+ L   I N  +   S PS  +T+S GI+      P     
Sbjct: 412 EEFVVLLPATDGFGAATVAHTLHSAISNLHLEHPSSPSGVVTVSIGISTYDGSVPPDTLE 471

Query: 236 IIYRADQALYVAKKSGRNRVVC 257
           +I+ ADQALY AK  GRNR   
Sbjct: 472 LIHTADQALYRAKSLGRNRTEI 493


>gi|296533653|ref|ZP_06896211.1| GGDEF domain protein [Roseomonas cervicalis ATCC 49957]
 gi|296266022|gb|EFH12089.1| GGDEF domain protein [Roseomonas cervicalis ATCC 49957]
          Length = 262

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 113/224 (50%), Gaps = 11/224 (4%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS-LLLGYISGSILKELF 94
           ++ +A  + +A   LF      F      L      ++I+  I  LLLG+I  + L  L+
Sbjct: 30  AVLLALAVDVAQQLLF------FTDWPTALRSWAVTIVIATGIGVLLLGWIGRAHLA-LY 82

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-SIVFFDIDYFKQINDNFGHPVGDK 153
            +  +  +LSR D L+GL N  A + +    +  L ++V  D+D+FK++ND  GH VGD 
Sbjct: 83  EAKQQAERLSRTDPLTGLANRRALLEAAERGDLALMALVIIDLDHFKRVNDTHGHRVGDA 142

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  +S  L    G    + RLGGEEFA  A G +          LR  + +  + ++ G
Sbjct: 143 VLQAVSGILAAELGEEGVLARLGGEEFALLAPGEAPAALLARLVRLRDRLADQPV-VAEG 201

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            ++ +TISAG+A R        +   AD+ALY AK+ GRNR+  
Sbjct: 202 RAVSVTISAGVALRQAG-SFDALYGEADRALYAAKQGGRNRICL 244


>gi|163761463|ref|ZP_02168536.1| diguanylate cyclase [Hoeflea phototrophica DFL-43]
 gi|162281307|gb|EDQ31605.1| diguanylate cyclase [Hoeflea phototrophica DFL-43]
          Length = 316

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 14/174 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L    +++ QLSR D L+G+ N     + L          ++ LS++  DID FK IND+
Sbjct: 130 LEEQRDQLDQLSRTDSLTGVSNRRELEAVLERLFKEADRSDQPLSLLMMDIDNFKLINDS 189

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD+V+  L+  L  V      V RLGG+EF      +    A +LA+ +   +  
Sbjct: 190 YGHDAGDQVLCALAKVLQSVCRETDVVARLGGDEFVCVLHDTDLSGAQVLADRIMAAVSK 249

Query: 206 SQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
                S+      T+S GI+ R          ++  AD+ALY AK  GR+R   
Sbjct: 250 -----SADAPCAYTVSIGISGRTRLFSASSGDVLKFADKALYDAKAGGRDRTAV 298


>gi|187929770|ref|YP_001900257.1| diguanylate cyclase [Ralstonia pickettii 12J]
 gi|309781514|ref|ZP_07676250.1| GGDEF domain-containing protein [Ralstonia sp. 5_7_47FAA]
 gi|187726660|gb|ACD27825.1| diguanylate cyclase [Ralstonia pickettii 12J]
 gi|308919927|gb|EFP65588.1| GGDEF domain-containing protein [Ralstonia sp. 5_7_47FAA]
          Length = 555

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 100/200 (50%), Gaps = 9/200 (4%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS---- 120
           ++   +LV  S+        ++  + + L  + + ++  +  D L+G+L    F++    
Sbjct: 357 VLVTFALVAWSLVRERQHHRVTRHLNQRLQRTNSALANEAHFDHLTGVLTRRRFLALFDT 416

Query: 121 ---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                 +  E L +V  D+D+FK+IND +GH VGD  +   +     V  +   VGRLGG
Sbjct: 417 VLARAHNRAEPLVLVLADLDHFKRINDTWGHAVGDMALQRFASLATGVLRSSDLVGRLGG 476

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EEFA     ++ + A  +A  LR  +  +  +  +G  + +T+S G+      +  S ++
Sbjct: 477 EEFAMVMGRTTLETATEVAERLRTAVAETDESFPTG--LSMTVSMGMTGCRPGDTASEML 534

Query: 238 YRADQALYVAKKSGRNRVVC 257
            RAD ALY AK+SGRNR V 
Sbjct: 535 KRADLALYRAKESGRNRHVA 554


>gi|75907253|ref|YP_321549.1| response regulator receiver modulated diguanylate cyclase [Anabaena
           variabilis ATCC 29413]
 gi|75700978|gb|ABA20654.1| response regulator receiver modulated diguanylate cyclase [Anabaena
           variabilis ATCC 29413]
          Length = 330

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 11/181 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQ 141
           + ++L  +   + +L  ID L+ + N   F        +        LS++  D+D+FK 
Sbjct: 132 LQQKLEAANRELQRLVTIDELTQVANRRRFEEYCAQEWQRMARDQLPLSLILCDVDFFKA 191

Query: 142 INDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND +GH  GD+ +  ++  +          V R GGEEFA     +  + A  LAN + 
Sbjct: 192 YNDTYGHRAGDRCLQLVAKAIENCVNRPADVVARYGGEEFAVILPRTYPEGAIHLANAIC 251

Query: 201 KIIENSQI-NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +   QI +++S  +  +TISAG+A            II  AD+ALY AK +GR+R   
Sbjct: 252 SAVRELQIPHLTSQANTCVTISAGVATEIPVPNSDFQEIIDAADRALYQAKMAGRDRCQQ 311

Query: 258 F 258
           +
Sbjct: 312 Y 312


>gi|312793688|ref|YP_004026611.1| diguanylate cyclase with gaf sensor [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312875807|ref|ZP_07735797.1| diguanylate cyclase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797288|gb|EFR13627.1| diguanylate cyclase [Caldicellulosiruptor lactoaceticus 6A]
 gi|312180828|gb|ADQ40998.1| diguanylate cyclase with GAF sensor [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 557

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 9/185 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFFDIDYFKQ 141
           SI  E    Y ++  ++ +D L+G  N       L    +       +SI  FD+D FK+
Sbjct: 373 SIALENSSLYQQMRSMAMVDGLTGAFNRIYLYEVLEREIQASAGRYPVSIALFDVDNFKK 432

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH  GDKV+  +             V R GGEEF          EA  +   +R+
Sbjct: 433 LNDTYGHLFGDKVLQTIVRIAREKVRKGDIVARYGGEEFIIVFNHLESNEAYKVVERIRR 492

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS- 259
            IE+  I   +     +T+S GIA    H + +  +I  AD A+Y AK SG+N  V ++ 
Sbjct: 493 AIESETIE-DNLIQTRVTVSFGIASYPLHADNVKDLIKCADVAMYRAKSSGKNCTVVYNQ 551

Query: 260 DIENN 264
           ++E  
Sbjct: 552 ELEMK 556


>gi|295690169|ref|YP_003593862.1| response regulator receiver modulated diguanylate cyclase
           [Caulobacter segnis ATCC 21756]
 gi|295432072|gb|ADG11244.1| response regulator receiver modulated diguanylate cyclase
           [Caulobacter segnis ATCC 21756]
          Length = 454

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 9/164 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL N    +  L +         +++S +  DID+FK+IND FGH +GD+V
Sbjct: 287 ELAVTDQLTGLHNRRYMVGQLETLVRRAAMGGDEVSALLIDIDHFKKINDTFGHDIGDEV 346

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   + +L           R GGEEF      +   +A  +A  +RK +  S   +++G 
Sbjct: 347 LREFALRLASNVRAIDLPCRYGGEEFTVIMPETRMADALRIAERIRKHVSASPFKVANGD 406

Query: 215 S-IHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             + +T+S G+ A    ++    ++ RAD+ +Y AK SGRN VV
Sbjct: 407 EMLTVTVSVGVSATGGPEDTPEALLKRADEGVYEAKASGRNTVV 450


>gi|258655313|ref|YP_003204469.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nakamurella multipartita DSM 44233]
 gi|258558538|gb|ACV81480.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nakamurella multipartita DSM 44233]
          Length = 1039

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 86/194 (44%), Gaps = 9/194 (4%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSI 131
           ++L   +    + E     + + + +  D L+ L N +     L           E  ++
Sbjct: 577 AVLGAVLVMHDVTERRRVESALIRQALHDPLTDLANRALLGDRLDQAIARQQRQPEPFAL 636

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  D+D FK +ND+ GH  GD+V+  ++ +L         V RLGG+EFA     + + +
Sbjct: 637 LLLDLDGFKLVNDSLGHQAGDQVLITVATRLRTSLWAEDTVARLGGDEFAVLLERTCDSQ 696

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A  +A  L  ++    + + +  +I    S G+A     +   +++  AD A+Y AK +G
Sbjct: 697 ALAIAEQLLGVLRR-PVQVHA-HTITPDASVGVALSTGDDTAESMLRNADLAMYAAKDAG 754

Query: 252 RNRVVCFSDIENNT 265
           +  V  +    + +
Sbjct: 755 KGVVQVYRASMHES 768


>gi|119490567|ref|ZP_01623009.1| hypothetical protein L8106_08046 [Lyngbya sp. PCC 8106]
 gi|119453895|gb|EAW35051.1| hypothetical protein L8106_08046 [Lyngbya sp. PCC 8106]
          Length = 696

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 14/188 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYF 139
             +    I+ +++   +  D L+GLLN   F+  L   +           +I F D+D F
Sbjct: 255 RDITHQKIATDKLRYQAFHDPLTGLLNRHGFMQKLQEADSYRLINPDFVFAIFFLDLDRF 314

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K IND+ GH VGD+++  ++++L+        V RLGG+EFA          E   +A  
Sbjct: 315 KVINDSLGHQVGDQLLQVIANKLIQSVRNIDEVARLGGDEFAILIENLDDLHEICQIAQR 374

Query: 199 LR-KIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
           +R +II+   IN   G  +   +S GI         +  +I  AD A+Y AK  GR R  
Sbjct: 375 IRNEIIKPIDIN---GDEVFTNVSIGIVLSSIGYNQVDDLIRDADLAMYRAKTLGRGRYE 431

Query: 257 CFSDIENN 264
            F++    
Sbjct: 432 VFNETMRE 439


>gi|78067984|ref|YP_370753.1| diguanylate cyclase [Burkholderia sp. 383]
 gi|77968729|gb|ABB10109.1| diguanylate cyclase [Burkholderia sp. 383]
          Length = 452

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 115/258 (44%), Gaps = 13/258 (5%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           L +WL +   L +    T  +  ++   + IA +  + +  L  +  T  + + + L   
Sbjct: 196 LVVWLLNALALVAVL-ATGRLRTTLDLWLAIAVLACLTDTTLNLMS-TDRFTVGWYLARV 253

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------S 121
            S+    + + +L   ++  + + L  ++  + + S  D L+G  N   F          
Sbjct: 254 FSMFTPGVLVCVLAWEVT-MLYQRLLEAHATLIRSSARDGLTGAFNRMHFNDHFHTLFLQ 312

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEF 180
                E LS++  D+D FK  ND FGH  GD  +  +++ L      P   V R GGEEF
Sbjct: 313 ARRQGEPLSLLMVDVDRFKAYNDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEF 372

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIY 238
           A     +  + A ++A + R+ +    + + + P+  +++S G A     +      +I 
Sbjct: 373 AIVLPNTGARGARVVAEEAREAVLRLDLAMPTAPAGRVSVSVGCATVSPDDLSTPDALIE 432

Query: 239 RADQALYVAKKSGRNRVV 256
            AD ALY AK +GRNRVV
Sbjct: 433 AADAALYRAKDTGRNRVV 450


>gi|256005442|ref|ZP_05430405.1| diguanylate cyclase and serine/threonine protein kinase with TPR
            repeats [Clostridium thermocellum DSM 2360]
 gi|255990582|gb|EEU00701.1| diguanylate cyclase and serine/threonine protein kinase with TPR
            repeats [Clostridium thermocellum DSM 2360]
 gi|316940432|gb|ADU74466.1| diguanylate cyclase with TPR repeats [Clostridium thermocellum DSM
            1313]
          Length = 1826

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 11/180 (6%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            S +  L I    +  +S  D L+G      F +++            ++SI+  DID FK
Sbjct: 1469 SKIAALQIENYDLKIISTTDKLTGTYTRKFFENAIETQLKKASREKSQMSIIMIDIDKFK 1528

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
             INDN+GH  GD++++ + + L+          R GGEEF      +   EA  LA  LR
Sbjct: 1529 SINDNYGHQKGDEILSKVGNILLKNIRPTDICCRYGGEEFVIILPDTGPSEAEALAERLR 1588

Query: 201  KIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFS 259
              +E +++    G    +TIS GI+       I + +I +ADQALY AK+SGRNR   ++
Sbjct: 1589 STVEKARLM---GQGNSLTISLGISCYPKHGSIRNELIEKADQALYHAKESGRNRYSLWN 1645


>gi|162456680|ref|YP_001619047.1| GAF/GGDEF domain-containing protein [Sorangium cellulosum 'So ce
           56']
 gi|161167262|emb|CAN98567.1| putative membrane protein (GAF and GGDEF domain) [Sorangium
           cellulosum 'So ce 56']
          Length = 859

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 63/196 (32%), Positives = 102/196 (52%), Gaps = 13/196 (6%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKL 129
           T+ +L  +++ S+     +   R+ +L+ +D L+GLLN  A +        +   ++ +L
Sbjct: 523 TLEVLASHMAVSLSNARMV--RRLEELATMDGLTGLLNKRAMLEVADQKITAARRFSRRL 580

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  DID+FK++ND +GH VGD +I  L D L     T   V R GGEEF      +  
Sbjct: 581 SVLVTDIDHFKKVNDTYGHDVGDVIIKGLGDVLRRAKRTTDAVARFGGEEFVVICEETDA 640

Query: 190 QEAAILANDLRKIIENSQINI--SSGP-SIHITISAGIAERCH-KEPISTIIYRADQALY 245
           + A +LA  +R+ +  +  +   SSGP    +T S GIA           +   AD++LY
Sbjct: 641 RGAMLLAERVREELGRTTFHAAGSSGPVQCQVTCSIGIATYPEAGSTWEELFKAADESLY 700

Query: 246 VAKKSGRNRVVCFSDI 261
           V+K+SGRNR   +S  
Sbjct: 701 VSKRSGRNRSTAWSPA 716


>gi|189424221|ref|YP_001951398.1| diguanylate cyclase/phosphodiesterase [Geobacter lovleyi SZ]
 gi|189420480|gb|ACD94878.1| diguanylate cyclase/phosphodiesterase [Geobacter lovleyi SZ]
          Length = 859

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 91/202 (45%), Gaps = 10/202 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS--- 120
           I+ + +  ++I+  ++ LL  I    +K ++     +   +  D L+ L N   F     
Sbjct: 402 IMADPIRSLVINSILTTLLNVIGS--IKAIYKYTKDLEYYATRDPLTNLFNQRVFWELLG 459

Query: 121 ----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                   ++++  ++  D+D FK IND +GH VGDK +  ++D +         + R G
Sbjct: 460 YEIGRAERHHQQFGVLVIDLDNFKHINDTYGHLVGDKYLVQIADTIHASLRLGDILARYG 519

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPIST 235
           G+EFA     +  ++  ++AN +R+ +E   +  + G  I  T S G A    H      
Sbjct: 520 GDEFAIVLPDADHEQVHMVANRIREAMEAMTLVTADGSKIRGTASIGYAVCPDHATTAKD 579

Query: 236 IIYRADQALYVAKKSGRNRVVC 257
           +   AD   Y AK  G+N +V 
Sbjct: 580 LFLFADNMTYKAKSLGKNCIVV 601


>gi|17989354|ref|NP_541987.1| c-di-GMP phosphodiesterase A [Brucella melitensis bv. 1 str. 16M]
 gi|17985224|gb|AAL54251.1| c-di-gmp phosphodiesterase a [Brucella melitensis bv. 1 str. 16M]
          Length = 378

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS--- 130
           L++G I+     I  +   +  R++  +  D L+ L N       ++   S  + LS   
Sbjct: 184 LMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGKLLTQKKSARDGLSRDG 243

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSS 188
            ++  D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF      G+S
Sbjct: 244 FLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTS 303

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++  I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK
Sbjct: 304 KEQTDIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAK 362

Query: 249 KSGRNRVVCFSD 260
             G+NR   F +
Sbjct: 363 SKGKNRFEYFEE 374


>gi|125973335|ref|YP_001037245.1| diguanylate cyclase [Clostridium thermocellum ATCC 27405]
 gi|125713560|gb|ABN52052.1| diguanylate cyclase [Clostridium thermocellum ATCC 27405]
          Length = 1826

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 11/180 (6%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            S +  L I    +  +S  D L+G      F +++            ++SI+  DID FK
Sbjct: 1469 SKIAALQIENYDLKIISTTDKLTGTYTRKFFENAIETQLKKASREKSQMSIIMIDIDKFK 1528

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
             INDN+GH  GD++++ + + L+          R GGEEF      +   EA  LA  LR
Sbjct: 1529 SINDNYGHQKGDEILSKVGNILLKNIRPTDICCRYGGEEFVIILPDTGPSEAEALAERLR 1588

Query: 201  KIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFS 259
              +E +++    G    +TIS GI+       I + +I +ADQALY AK+SGRNR   ++
Sbjct: 1589 STVEKARLM---GQGNSLTISLGISCYPKHGSIRNELIEKADQALYHAKESGRNRYSLWN 1645


>gi|320175456|gb|EFW50555.1| diguanylate cyclase GGDEF domain protein [Shigella dysenteriae CDC
           74-1112]
          Length = 558

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/199 (27%), Positives = 95/199 (47%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND F H  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFSHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 536 LADRRLYLAKQAGRNRVCA 554


>gi|282861272|ref|ZP_06270337.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces sp. ACTE]
 gi|282563930|gb|EFB69467.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces sp. ACTE]
          Length = 941

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 16/194 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
            ++   + E      ++   +  D L+ L N + F + +          +   +++F D+
Sbjct: 456 LLNSRDVTERVRLQEQLQHNAEHDPLTDLPNRALFTARVAQALGGRRTGDAGTAVLFIDL 515

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-------E 189
           D FK +ND  GH  GD+++   + +L           RLGG+EFAA  +G         E
Sbjct: 516 DGFKAVNDTIGHQAGDELLVQAARRLQDSVRAWDTAARLGGDEFAALIVGDGTGDQAARE 575

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            +   +A  LR  +  SQ     G  + +  S G+A          ++  AD A+Y AK 
Sbjct: 576 YQVHEIAERLRLTL--SQPYRIGGREVRVAASIGVAFAEPGITPKDLMRNADLAMYRAKA 633

Query: 250 SGRNRVVCFSDIEN 263
            G++RV  ++    
Sbjct: 634 GGKDRVELYAPQMQ 647


>gi|257482526|ref|ZP_05636567.1| PAS:GGDEF [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289626594|ref|ZP_06459548.1| PAS:GGDEF [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289649855|ref|ZP_06481198.1| PAS:GGDEF [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298484695|ref|ZP_07002798.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160835|gb|EFI01853.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320326749|gb|EFW82794.1| oxidoreductase domain-containing protein [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320331277|gb|EFW87220.1| oxidoreductase domain-containing protein [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330867966|gb|EGH02675.1| PAS:GGDEF protein [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330988029|gb|EGH86132.1| PAS:GGDEF protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331012827|gb|EGH92883.1| PAS:GGDEF protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 332

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
              + +     + + +L+  D L+   N   F                 L+ +  DID F
Sbjct: 154 AEDITDKKHLEDELQRLATTDVLTQSSNRRHFFECAQREFELARLNGTPLAFLLLDIDDF 213

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND +GH  GD V+  +++            GR+GGEEFAA   G +   A  +A  L
Sbjct: 214 KLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCAPDMAMQIAERL 273

Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++ I+      S G +  IT S G+         + T+  RAD A+Y AK+ G+N++V 
Sbjct: 274 QREIQRQNFQ-SGGTTFSITASQGLTNLGPEDSSLETLYGRADAAMYQAKRQGKNQIVL 331


>gi|158334589|ref|YP_001515761.1| PAS sensor diguanylate cyclase/phophodiesterase [Acaryochloris
           marina MBIC11017]
 gi|158304830|gb|ABW26447.1| PAS sensor diguanylate cyclase/phophodiesterase, putative
           [Acaryochloris marina MBIC11017]
          Length = 935

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 80/180 (44%), Gaps = 9/180 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYF 139
           G  + E      +++  +  D L+GL+N   F   LG   E       + ++ F D+D F
Sbjct: 497 GRDITEAHSLSQQLTHQATHDSLTGLVNRREFEHQLGQIIEEKQSNPIQHALCFLDLDQF 556

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND  GH  GD ++  ++D L         + RLGG+EF       S ++A I+  +L
Sbjct: 557 KIVNDTVGHLAGDALLKQVADLLQAHIRQTDILSRLGGDEFGLLLKNCSLEKARIVTENL 616

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTII-YRADQALYVAKKSGRNRVVCF 258
              +   +  I  G    I  S GI          T++  +AD A Y AK  GRNRV  +
Sbjct: 617 ISELSQFRF-IWEGQLFKIGASIGIVPITADTDNLTLLFAKADVACYSAKDRGRNRVHLY 675


>gi|95929161|ref|ZP_01311905.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95134659|gb|EAT16314.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 515

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 104/231 (45%), Gaps = 26/231 (11%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
           IA V+ IAN  L  + L+     E +   N SLV  ++ + +L          EL     
Sbjct: 293 IAEVLQIANAELSVLNLS----YEQM---NRSLVEKTVQLEMLTA--------ELEKKNK 337

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
            + +L+ +D L+   NH  F + L     +       LS+V  DID FK+ ND  GH VG
Sbjct: 338 LLERLANVDGLTEAYNHRYFQNFLDREINRSERNDYTLSVVMVDIDNFKKFNDLHGHQVG 397

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D ++   +D    +        R GGEEF      ++ QE  ++A   R  +        
Sbjct: 398 DYILKQFADVARSLLREYDLFARYGGEEFVLVLPETNAQEGEVVAEKFRSTLSEHTFTH- 456

Query: 212 SGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCFS 259
              + +IT S G+++    +     + +I +AD ALY +KK GRNRV  +S
Sbjct: 457 ERETYYITASFGVSDISPAKDKIDKNDVISQADSALYESKKKGRNRVTVYS 507


>gi|310768330|gb|ADP13280.1| putative signal transduction protein [Erwinia sp. Ejp617]
          Length = 527

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 85/164 (51%), Gaps = 9/164 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+   ++ D ++GLLN     + LG   S  +  +++  DID FK +ND FGH  GD VI
Sbjct: 351 RLKSEAQTDPMTGLLNRRGLDAVLGYFFSTKQPFAVLALDIDRFKSVNDAFGHAAGDTVI 410

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++ QL +       + R GGEEF     G+    A ++A  +RK IE  ++  +    
Sbjct: 411 KTVAHQLELGARQADVLCRNGGEEFLMLLPGADRDRALMVAERVRKRIEQLRMEAAG--- 467

Query: 216 IHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            ++TIS GI+       E +     +AD+ALY AK +GRN VV 
Sbjct: 468 -NVTISIGISFWSSDSGEDMHCAFGQADEALYRAKNAGRNCVVV 510


>gi|326315980|ref|YP_004233652.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372816|gb|ADX45085.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 850

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/217 (24%), Positives = 91/217 (41%), Gaps = 19/217 (8%)

Query: 64  ILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I   ++S + +       LGY   G  + E       I +L+  D L+GL N       L
Sbjct: 374 IYWVSVSGIPVFSADGAFLGYRGVGRDITERKRVDAEIERLAFFDPLTGLPNRRLLTDRL 433

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     +   +++F D+D FK +ND  GH +GD+++   + +L+   G    V R 
Sbjct: 434 HRAIGTAAQEHSHGALLFLDLDNFKDLNDTLGHDMGDRLLVQAAQRLLACVGAGDTVSRF 493

Query: 176 GGEEFAAAA------LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
           GG+EF   A      +  +  +AA+LAN +   +      +      H T S G+A    
Sbjct: 494 GGDEFVVLAEGLPGDMHRARADAAVLANRITAAL-GRPYAVGGMGYHHSTPSIGLALFGG 552

Query: 230 KE----PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
                  +  ++  AD A+Y +K +GRN +  F    
Sbjct: 553 GTGDAAGVDDLLKHADLAMYQSKAAGRNTIRFFDPSM 589


>gi|188996073|ref|YP_001930324.1| diguanylate cyclase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931140|gb|ACD65770.1| diguanylate cyclase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 492

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 78/164 (47%), Gaps = 11/164 (6%)

Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            + +  D L+GL N S         I      N+ +SI+ FDID+FK+IND +GH  GD 
Sbjct: 330 EKKAITDKLTGLFNRSIIDTLIQVEIERAKRNNKPISILLFDIDHFKKINDTYGHDKGDY 389

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  +++          +V R GGEEF A    +    A  +A  +R  IEN        
Sbjct: 390 ALKTIAEIARRTLRKSDYVLRWGGEEFLAILPETDLDGATKVAEKIRSNIENYNFKDIG- 448

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               +T+S G+      EP+   I RAD+ALY AK  GRNRV  
Sbjct: 449 ---RVTVSIGVTMLKIGEPLDNAIKRADEALYAAKNKGRNRVEV 489


>gi|110805762|ref|YP_689282.1| hypothetical protein SFV_1817 [Shigella flexneri 5 str. 8401]
 gi|110615310|gb|ABF03977.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 410

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 238 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 296

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 297 HINDLYGHSKGDEVLCALARPLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 356

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 357 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 407


>gi|260775887|ref|ZP_05884783.1| intracellular signaling protein (PAS,GAF,GGDEF domains) [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608303|gb|EEX34472.1| intracellular signaling protein (PAS,GAF,GGDEF domains) [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 471

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 8/175 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
              L  L  + N++  L+  D L+GL N     S+L         Y   L +  FD D+F
Sbjct: 287 QQDLDALKHARNQLEVLASTDPLTGLANRRYIESTLDKQLDLHHRYGLPLVVALFDFDHF 346

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND FGH +GD+ +      +  +        R GGEEF A    +S   A  L   +
Sbjct: 347 KRVNDQFGHQMGDEALQRFGAIVATLTRKEDVYARWGGEEFLALLPNTSLAGALTLIERI 406

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
              ++   +   +G  I +++S G+     ++  S+++ RAD  LY AK +GR+R
Sbjct: 407 THSVKAQPLEY-NGAPIALSVSVGVTAVHEQDNASSVLKRADALLYRAKANGRDR 460


>gi|288942659|ref|YP_003444899.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
 gi|288898031|gb|ADC63867.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
          Length = 342

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 92/179 (51%), Gaps = 8/179 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ ++ L        + +R+D L+ + N   F  +L        +E   ++  D+D+FK
Sbjct: 164 AGAQVERLTRELEESERRARLDSLTKIPNRRGFDEALAQSLSGGDDEPTCLMLMDLDHFK 223

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GHP+GD+V+  +   L  +    +FV R GGEEFA        + A +LA  +R
Sbjct: 224 RLNDTYGHPMGDRVLEIVGTVLAKLQSDHVFVARYGGEEFAVIV-HDELEAAQMLAEQIR 282

Query: 201 KIIENSQINISSGPS--IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +   QI   S       IT+S G+      E  +++I RAD  LY AK+ GR+RVV 
Sbjct: 283 RQVAALQIRRKSTQDTIGAITVSIGLTRFRPGETAASLIERADTGLYRAKEGGRDRVVI 341


>gi|298530017|ref|ZP_07017419.1| diguanylate cyclase with PAS/PAC sensor [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509391|gb|EFI33295.1| diguanylate cyclase with PAS/PAC sensor [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 456

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 11/182 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           +G  + E      RI  ++  D L+GL N +     +            +++++F D+D 
Sbjct: 270 TGIDITEQRRMQERIEHMAMHDGLTGLPNRNLLQDRMEMAIAAAKRTGNRVALLFLDLDG 329

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAN 197
           FK INDN+GH  GD+V+  +S +L  +      V R GG+EF      + + ++A  +A 
Sbjct: 330 FKAINDNYGHSTGDEVLTLVSRRLKELVRASDTVARFGGDEFVILLTDTGKLEDAKQVAR 389

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            +    + S+  I       + +S GI+      E    ++  AD+A+Y  KKS  ++  
Sbjct: 390 KV--AWQLSRPYILPSGEHQLGVSMGISLYPDDAESAEDLMRLADKAMYRVKKSSGDKET 447

Query: 257 CF 258
           CF
Sbjct: 448 CF 449


>gi|147678465|ref|YP_001212680.1| hypothetical protein PTH_2130 [Pelotomaculum thermopropionicum SI]
 gi|146274562|dbj|BAF60311.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 564

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 63/201 (31%), Positives = 101/201 (50%), Gaps = 11/201 (5%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------- 125
           II+ T+ L L +  G +          ++ ++  D L+GL NH  F  SL  +       
Sbjct: 159 IINSTVMLTLAWFIGGLADVDKDIRVMLTDMANTDGLTGLFNHRYFHQSLQDHIKQAREN 218

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           N +LS++ FDIDYFK  NDN+GH  GD+++  +   L  V  +P    R GG+EF     
Sbjct: 219 NSQLSLIMFDIDYFKFYNDNYGHQKGDELLKEMGLILNTVVKSPCIAARYGGDEFTVIVP 278

Query: 186 GSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERC-HKEPISTIIYRADQA 243
           G S++ A  +A ++R+ IE+      +  P   IT+S G+A    H      +I  AD+A
Sbjct: 279 G-SKERAMEIAEEIRQAIESQPFEGAAVQPKGKITVSLGVATFPKHGSTPKELIRSADEA 337

Query: 244 LYVAKKSGRNRVVCFSDIENN 264
           +Y AK  G N+   +  + ++
Sbjct: 338 MYKAKYQG-NKAQLYFSVMDD 357


>gi|322831781|ref|YP_004211808.1| diguanylate cyclase with PAS/PAC and GAF sensors [Rahnella sp.
           Y9602]
 gi|321166982|gb|ADW72681.1| diguanylate cyclase with PAS/PAC and GAF sensors [Rahnella sp.
           Y9602]
          Length = 444

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 13/182 (7%)

Query: 81  LLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSI 131
           LL ++S  I    E      R+  +++ D L+ L N       L            +LS+
Sbjct: 264 LLQFVSTQIATVIERQQMQARLQYMAQYDPLTDLPNRGFLHDRLKVALSTARREQGQLSL 323

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           ++ D+D FKQ+ND  GH +GD ++   + +L +       V R+GG+EF     G S   
Sbjct: 324 LYIDLDKFKQVNDTLGHGIGDLLLQGAAARLKLCVRESDTVARVGGDEFVVLLQGVSLPA 383

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
           +A +A  +R     +      G S+ IT S GIA    H      ++  AD A+Y+AK +
Sbjct: 384 SARVAEKIRDAF--NPPFTLEGHSLTITPSIGIALYPEHGNDERQLLEYADNAMYLAK-N 440

Query: 251 GR 252
           G+
Sbjct: 441 GK 442


>gi|124515615|gb|EAY57125.1| Diguanylate cyclase/phosphodiesterase [Leptospirillum rubarum]
          Length = 719

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 96/225 (42%), Gaps = 13/225 (5%)

Query: 51  FYIGLTPFYGLEYILVENLS---LVIISITISLLLGYISGSILKELFISYNRISQLSRID 107
           +   L+   G+ Y +   L+     +I   +S+++  I  S +    +S   +   S  D
Sbjct: 241 YAADLSGILGIAYGVTRELTPQEQSVIQSILSVMVMVIGSSKVISRTLS--ELEYYSTHD 298

Query: 108 CLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+GL N   F       I     +  K  ++  D+D FK +ND++GH  GD+V+  L  
Sbjct: 299 PLTGLHNRRYFNEMIGYEIQRSERHGHKFCLLMIDLDNFKDVNDSYGHLDGDRVLNQLGK 358

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            +         V R GG+EF      +S      LA  +R+ I+      +   S H+T+
Sbjct: 359 IVTGTVRKGDIVCRFGGDEFVVLLSETSLSGGCTLAETVREAIQTWSFGTTDRGSFHVTV 418

Query: 221 SAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           S GI A       I  ++   D  LY AK+ GRN V    D+  +
Sbjct: 419 SVGIVAYPQDGNQIEDLLAGLDLVLYRAKERGRNTVASSRDLRTD 463


>gi|189425841|ref|YP_001953018.1| diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ]
 gi|189422100|gb|ACD96498.1| diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ]
          Length = 648

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 11/189 (5%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           L+   I+   + E       + Q++  D L+GL N + F   +           + L+I+
Sbjct: 462 LVGAVITFVDITERRKMEATLQQMAHYDILTGLPNRALFSDRVQQALVEAKRDRKCLAIM 521

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQE 191
           F D+D FK +NDN+GH VGD ++  +++++ +       V R+GG+EF          Q+
Sbjct: 522 FIDLDKFKPVNDNYGHAVGDLLLKEVANRIKLPIRESDTVARIGGDEFVVLLKNIKDGQD 581

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKS 250
           A ++A  +R  +  +   I +  S+ I+ S GI+      P   T+   AD A+Y AK S
Sbjct: 582 ALVVAEKIRTSL--NMPFILNTLSLGISSSIGISVFPEHGPDEVTLCKNADTAMYQAKVS 639

Query: 251 GRNRVVCFS 259
           GR+ V  F+
Sbjct: 640 GRDAVRLFA 648


>gi|54296323|ref|YP_122692.1| hypothetical protein lpp0352 [Legionella pneumophila str. Paris]
 gi|53750108|emb|CAH11500.1| hypothetical protein lpp0352 [Legionella pneumophila str. Paris]
          Length = 507

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 90/188 (47%), Gaps = 11/188 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           S   + E      ++   +  D L+ L N    I  +         +  K +I+FFD+D 
Sbjct: 297 SFRDITEQTRLKEKLEYQATHDALTNLPNRLLLIDRIEHAISGYARHKMKFAILFFDLDR 356

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK IND+  H  GD+++  ++++L  +      + RLGG+EF       +SE++ A +A 
Sbjct: 357 FKMINDSLSHEAGDQLLCDVAERLRSLVRKEDTLARLGGDEFVMLFQSFNSEEQIAGVAQ 416

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            + K  +  +    +   I+I +S GI+      + ++T++  AD A+Y AK  G N+  
Sbjct: 417 KILKSFQ--KPFHIAERDINIHVSIGISVYPTDGKTVNTLLSNADMAMYQAKFRGGNQFS 474

Query: 257 CFSDIENN 264
            +++  N 
Sbjct: 475 FYTEKLNK 482


>gi|330890171|gb|EGH22832.1| PAS:GGDEF protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 332

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
              + +     + + +L+  D L+   N   F                 L+ +  DID F
Sbjct: 154 AEDITDKKHLEDELQRLATTDVLTQSSNRRHFFECAQREFELARLNGTPLAFLLLDIDDF 213

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND +GH  GD V+  +++            GR+GGEEFAA   G +   A  +A  L
Sbjct: 214 KLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCAPDMAMQIAERL 273

Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++ I+      S G +  IT S G+         + T+  RAD A+Y AK+ G+N++V 
Sbjct: 274 QREIQRQNFQ-SGGTTFSITASQGLTNLGPEDSSLETLYGRADAAMYQAKRQGKNQIVL 331


>gi|326793521|ref|YP_004311341.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326544285|gb|ADZ89505.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 392

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 71/269 (26%), Positives = 118/269 (43%), Gaps = 18/269 (6%)

Query: 12  WLCHEKNLESFSPHTFMIY----FSIFFSIFIATVIFIANIFLF----YIGLTPFYGLEY 63
           WL   + ++ + P + M+      SI FS       FI  +FLF     +    F+  E 
Sbjct: 111 WLGTWRLIDMYPPISGMVLVAMSLSILFSHSFQFRQFILLLFLFNTIPVLSYLAFHMDEL 170

Query: 64  ILVENLSLVIISITISLLLGYI------SGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           + +  + L+     + LLL ++       G  +  L     R    +  D L+ L N   
Sbjct: 171 VTLRGVELMTNFGPMMLLLIFVLPYQMHFGKYVDTLRNRQKRTEHEAERDYLTDLYNRRG 230

Query: 118 FISSLG--SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
           F +     +   +++ +  D D+FK IND FGH VGDKV+  L+ +L  ++    FV R 
Sbjct: 231 FENRKETLASETQVATLLVDADHFKHINDTFGHTVGDKVLVELASKLRGIYLNEHFVVRW 290

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           GGEEF    +    ++   +A+D    +   Q    +  ++  T+S G++          
Sbjct: 291 GGEEFLVLIVNPDPEQLKAIADDFHASLCTEQYRAIAPRAL--TVSIGVSNMGPLSQFEA 348

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +  +AD  LY AK+ GRN+V  FS   N 
Sbjct: 349 LFEQADHCLYKAKERGRNQVRLFSQETNE 377


>gi|284921215|emb|CBG34281.1| putative signaling protein [Escherichia coli 042]
          Length = 430

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 258 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCALARPLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|281417537|ref|ZP_06248557.1| diguanylate cyclase with TPR repeats [Clostridium thermocellum JW20]
 gi|281408939|gb|EFB39197.1| diguanylate cyclase with TPR repeats [Clostridium thermocellum JW20]
          Length = 1826

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 11/180 (6%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            S +  L I    +  +S  D L+G      F +++            ++SI+  DID FK
Sbjct: 1469 SKIAALQIENYDLKIISTTDKLTGTYTRKFFENAIETQLKKASREKSQMSIIMIDIDKFK 1528

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
             INDN+GH  GD++++ + + L+          R GGEEF      +   EA  LA  LR
Sbjct: 1529 SINDNYGHQKGDEILSKVGNILLKNIRPTDICCRYGGEEFVIILPDTGPSEAEALAERLR 1588

Query: 201  KIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFS 259
              +E +++    G    +TIS GI+       I + +I +ADQALY AK+SGRNR   ++
Sbjct: 1589 STVEKARLM---GQGNSLTISLGISCYPKHGSIRNELIEKADQALYHAKESGRNRYSLWN 1645


>gi|123442135|ref|YP_001006117.1| hypothetical protein YE1855 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089096|emb|CAL11934.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 569

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 13/177 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           +L  +  R+   +R D L+ L N   F                 L+++  DIDYFK  ND
Sbjct: 386 KLIKANRRLEIQARTDSLTKLPNRREFKKVLAHEFMRARRSASPLAVLMIDIDYFKNFND 445

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  L      +   V R GGEEFAA    + ++ A+++A  + + I
Sbjct: 446 CYGHISGDACLRLVARALRKSLKRSTDIVARYGGEEFAAILPDTDQKGASLVAEHILQSI 505

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNRV 255
               I  S      +TIS G+              S ++  ADQALY +KK+GRN+ 
Sbjct: 506 RAMGIKHSESKFRKVTISLGVTVYQSHLHSSITDQSDLMLTADQALYYSKKNGRNQF 562


>gi|262192355|ref|ZP_06050509.1| GGDEF domain protein [Vibrio cholerae CT 5369-93]
 gi|262031781|gb|EEY50365.1| GGDEF domain protein [Vibrio cholerae CT 5369-93]
          Length = 261

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 112/258 (43%), Gaps = 29/258 (11%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           IW C       F P  F I+ S  F+   + +  I    + Y          + L +  +
Sbjct: 6   IWSC-------FVPILFYIFTSARFAFVTSCLFLIIQSNIIY----------WQLQQTGA 48

Query: 71  LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAF---ISSL 122
            +  S+ + L   YI   ++  ++    R     +  L+  D L+G  N  +        
Sbjct: 49  AISWSVLLHLCFAYIGIWVVAHVYEDNRRKIENSLLYLASRDPLTGAHNRLSLTTSFQHF 108

Query: 123 GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
             +N++  L ++  D+D+FK IND FGH  GDKV+   +     V G    + R+GGEEF
Sbjct: 109 ERFNDQTSLCLLVIDLDFFKSINDQFGHDTGDKVLMETTRLFTQVVGDNN-LYRIGGEEF 167

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                  S ++A  +   LR I+            + +TIS G+ E    + ++ ++  A
Sbjct: 168 CVTLFDQSLEQAGRVCERLRAIVSQHLFAFGE-KRVQVTISIGVCEYQAGDQLNDLLKFA 226

Query: 241 DQALYVAKKSGRNRVVCF 258
           D  LY AKK+GRN+V  F
Sbjct: 227 DMELYRAKKAGRNQVRLF 244


>gi|254457084|ref|ZP_05070512.1| ggdef domain protein, putative [Campylobacterales bacterium GD 1]
 gi|207085876|gb|EDZ63160.1| ggdef domain protein, putative [Campylobacterales bacterium GD 1]
          Length = 722

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 10/179 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           ++       ++ +++ ID L+G+LN   F       I     Y   LS +  DID FK +
Sbjct: 545 IQRHQKQNLKLEKIAFIDILTGVLNRRKFGEISNKEIERSTRYGRNLSFLMLDIDNFKSL 604

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH +GDKV+   S   + +  +   + R+GGEEFA        + A + A   R+ 
Sbjct: 605 NDTYGHALGDKVLQHFSSTCLNMARSIDVIARIGGEEFAIMLPEVDAEGAYLFAERFREK 664

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFS 259
           I +SQ++I     I  ++S GIA     +      I+ +AD+ALY AK+SG+N  + ++
Sbjct: 665 IYSSQVHIEDKI-IKYSVSIGIATLDGDKDKEVKDILQKADKALYRAKESGKNCSIIYT 722


>gi|160877024|ref|YP_001556340.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160862546|gb|ABX51080.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|315269227|gb|ADT96080.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica OS678]
          Length = 328

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 76/272 (27%), Positives = 121/272 (44%), Gaps = 29/272 (10%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63
              D    WL  ++ +ES     FM+    F S      +F       +    P  G   
Sbjct: 60  RFPDLPVTWL--KQKMES----VFMLKNRAFISWEQRPYVFQ------FKNYRPITGRAD 107

Query: 64  ILVENLSLVIISIT------ISLLLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNH 115
            + +N++L+ ++        IS+++  ++   +   +L  +  ++ +LS+ D L+ L N 
Sbjct: 108 YMYQNVTLLPLASLTGQVTHISVIIYDVTDIAINKLQLKAANEQLERLSQTDGLTQLHNR 167

Query: 116 SAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
             +   L         Y+   S+V  DID FK IND++GH  GDKVI  ++  L      
Sbjct: 168 RHWQECLDHEYDIYARYSGMASLVMIDIDNFKHINDSYGHVAGDKVIQHIAHLLSQSLRE 227

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER- 227
               GR GGEEFA     +S  +A      LR+ I  S I +     I +T+S G+ E  
Sbjct: 228 TDCAGRYGGEEFAVVLPKTSGADAMYFTERLREKIAASVI-LYESLKISVTVSLGVCEIG 286

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            H    S+ I  +D+ALY AK+ GRN  V  +
Sbjct: 287 SHITSSSSWISCSDKALYEAKQKGRNCSVLHT 318


>gi|28869781|ref|NP_792400.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28853026|gb|AAO56095.1| GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 528

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 89/205 (43%), Gaps = 20/205 (9%)

Query: 81  LLGYISGSILKE---------LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124
           L+ +I   I  E         L      +  ++  D L+GL N   F             
Sbjct: 301 LIKHIHSRIRAEDQLLESQAALIQLNQHLEFIASEDKLTGLANRRRFDQFLDVEFKRARR 360

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAA 183
               LS++  D D+FK+ ND+FGH  GD+ +  L+  +      P     R GGEE A  
Sbjct: 361 ERNMLSLILMDADHFKRYNDHFGHLAGDECLVALARLVEQCIRRPGDVAARYGGEEIAVV 420

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRA 240
             G+ E  A  +A ++ + I + QI   + P   +T+S G+A             +I  A
Sbjct: 421 LPGTDEASARQVAENILQAIRDEQITHPASPFGIVTVSLGVATVVGSNRQISQRGLIELA 480

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D+ALY AK  GRNRV   S+I  NT
Sbjct: 481 DRALYAAKSQGRNRVNVASEIAFNT 505


>gi|331009061|gb|EGH89117.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 490

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 12/186 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIV 132
           L L ++    L+    + + ++ L+  D L+GL N                   ++LS++
Sbjct: 293 LWLTWLLCRELRRRHRAEDALASLAATDGLTGLDNRRQLDEAMETEWARAQRSGKQLSLL 352

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQE 191
             D+D+FK  N+  GH  GD+ +  +   +   +      V R GGEEF      +    
Sbjct: 353 MIDVDHFKAFNERHGHQGGDEALRLIEQTISFNIRRPGDRVARYGGEEFVVVLPETDLPG 412

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKK 249
           A ++A  +RK  E+  +    G    IT+S G+        + +      AD+ALY AK 
Sbjct: 413 AMMIAEQIRKAAESLPLFP--GAQQPITVSIGVVSEMVRQGDKLEAFFGIADKALYQAKH 470

Query: 250 SGRNRV 255
            GRNRV
Sbjct: 471 KGRNRV 476


>gi|253995396|ref|YP_003047460.1| diguanylate cyclase [Methylotenera mobilis JLW8]
 gi|253982075|gb|ACT46933.1| diguanylate cyclase [Methylotenera mobilis JLW8]
          Length = 395

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/263 (25%), Positives = 115/263 (43%), Gaps = 12/263 (4%)

Query: 8   FLSIW-LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILV 66
           F SI+ +C    L        + Y+    S     ++ +    L  +      GL     
Sbjct: 130 FFSIYTVCARALLVKIEASQKLAYWFTGASFAALALLMLTRAVLMLLSPDAEVGLHVNTS 189

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------ 120
            N    +++  +   + +    +L    I+   + Q++  D L+G +N            
Sbjct: 190 INTLPFVVASLLEFSVAFGLLLMLNHRLIA--DVYQMASRDALTGAMNRRRIEEEAVRLR 247

Query: 121 -SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                  E L+I+  DID+FK IND +GHP GDKV+  ++D          +  R GGEE
Sbjct: 248 ARCIRTGEPLAIMMIDIDFFKSINDRYGHPAGDKVLRAIADIAQKSIRAEDYFARYGGEE 307

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIY 238
           F      ++E EA  LA  LR       + +     ++IT+S G+A+        + ++ 
Sbjct: 308 FCMLLTSTTESEALDLAERLRLAFAEFTLTL-GKEQLNITVSIGVADSSMVGLEFADMVT 366

Query: 239 RADQALYVAKKSGRNRVVCFSDI 261
            AD+ALY AK++GRNRV+ +S +
Sbjct: 367 AADKALYCAKENGRNRVITYSSM 389


>gi|188992136|ref|YP_001904146.1| hypothetical protein xccb100_2741 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733896|emb|CAP52102.1| Conserved hypothetical protein with GGDEF domain [Xanthomonas
           campestris pv. campestris]
          Length = 376

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 8/176 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           +L  L I  +   + +  D L+GL N   F  +L             L +   DID+FK+
Sbjct: 201 LLTRLRIKSDAFERQAHEDALTGLPNRRHFDEALARDLSRARRSGRPLVLAILDIDHFKR 260

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND + H  GD V+  +   L           RLGGEEFA     ++ ++A  L   +R 
Sbjct: 261 INDQYSHASGDAVLHDVGVLLTAAARASDLPARLGGEEFALLLSDTTLEQAHALCLRIRA 320

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +++ +      + +T SAG+AE   +E  S+++ RAD ALY AK +GR+R+  
Sbjct: 321 QF-HARHDWGGVEGLQVTFSAGLAELGEEESGSSLMQRADHALYEAKSAGRDRICI 375


>gi|318606083|emb|CBY27581.1| hypothetical protein Y11_06001 [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 467

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 11/186 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVF 133
           ++ Y S   + EL  S + +  L++ D L+G+ N   F        +K       LS++ 
Sbjct: 276 VIWYGSFFDITELKQSESILKALAQTDVLTGVANRRHFDDIYQHIWQKTQTEGGTLSVLM 335

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            D D FK  ND +GH +GD  +  + + L   + G    + R GGEEF      S+  +A
Sbjct: 336 IDFDNFKNFNDLYGHAMGDVCLKSIVETLAKSIRGGSDILARYGGEEFIVLLAPSNLTDA 395

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKK 249
             +A  +R  IE   I     P   +TIS G+A             +   AD+ALY AK 
Sbjct: 396 TAVAERMRHSIEELDIPHGMSPHGRVTISVGVASVSDPGKYLSAKDLSDAADKALYRAKT 455

Query: 250 SGRNRV 255
           +G+N+V
Sbjct: 456 AGKNQV 461


>gi|229917001|ref|YP_002885647.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
 gi|229468430|gb|ACQ70202.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
          Length = 361

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 75/245 (30%), Positives = 119/245 (48%), Gaps = 11/245 (4%)

Query: 21  SFSPHTFMIYFSIFFS--IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITI 78
           +F     M++    F   +FI + +F+    LF I +  +  + +     +SLV+    I
Sbjct: 109 TFLVSIGMLWIHRLFRERLFIQS-LFLNVWALFIISIAVYINMGWSTAY-VSLVLTIWMI 166

Query: 79  SLLLGYISGSILKELFISYNR---ISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIV 132
            +L+G +S  +  +L  +  R     Q S  D L+GL N   +    +S+G  N   +++
Sbjct: 167 GMLVGLLSSILTIDLEQTTRRAIEYKQSSERDHLTGLYNRRVWDRYTASVGQENRTYNVL 226

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK +ND +GH  GD V+   ++ L V       V R+GGEEF       S ++ 
Sbjct: 227 ALDIDHFKHVNDTYGHGNGDLVLQQFANILKVETRAHDTVARIGGEEFVILMYDLSPEKV 286

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             +AN +R+ I      ++  P I IT S G+A      PI  ++  AD ALY AK  GR
Sbjct: 287 DKVANRIRERIATELFYLNDFPPIQITTSVGVAHGT-SLPIKRMVDLADSALYQAKNEGR 345

Query: 253 NRVVC 257
           N+VV 
Sbjct: 346 NQVVV 350


>gi|23957808|gb|AAN40821.1| unknown [Synechococcus elongatus PCC 7942]
          Length = 592

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 12/214 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           YI  E L+  I+     ++    +   + +     N++   +  D L+GL N +  I  L
Sbjct: 123 YIWFETLTKPIMDDQGVVIGLQTTSRDVTQRIEIQNQLQYDACHDSLTGLANRNLLIERL 182

Query: 123 GS--------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
                      N K +++F D+D FK IND+ GH  GD+++  ++ +L  +  +     R
Sbjct: 183 ELSLKRSKRLQNYKYAVLFLDLDRFKVINDSLGHITGDQLLVSIAQKLQSIIRSHDLAAR 242

Query: 175 LGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EP 232
           LGG+EF        +  E   +A  +   I+   + +    SI+ + S GI    H+ E 
Sbjct: 243 LGGDEFVVLVEDIQTFDEPIKVAERILAAIQ-VPLELEE-RSIYTSTSIGIVFGSHEYES 300

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            + ++  AD A+Y AK  GR R   F    ++  
Sbjct: 301 ATQLLRDADTAMYRAKSRGRARYEVFDSAMHSQA 334


>gi|319958161|gb|ADV90265.1| photoactive yellow protein/bacteriophytochrome/diguanylate
           cyclase/phosphodiesterase [Thermochromatium tepidum]
          Length = 1108

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 11/204 (5%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------G 123
           ++I +      L         +L+ S   +   +  D L+GL N + F  +L        
Sbjct: 653 VIIANAAYFERLAKTLAQQRDQLYRSREEMRHRALHDALTGLPNRAQFREALCEAIAASN 712

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
              E+ ++   DID+FK IND  GH  GD ++  +S ++         V RLGG+EFA  
Sbjct: 713 HSGERFAVALMDIDHFKTINDTLGHDKGDLLLCAVSRRIRTELPPTGLVARLGGDEFALL 772

Query: 184 ALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
                  + A   A  +   +   +  +    S  +T S G+           ++ RAD 
Sbjct: 773 LRHLPDPETAYAQAERVVAALR--RPLVIGEDSFSVTSSLGLVMGGADLEPGELLKRADL 830

Query: 243 ALYVAKKSGRNRVVCF-SDIENNT 265
           ALY AK++GRNRV  F SD+E+  
Sbjct: 831 ALYRAKEAGRNRVGHFDSDLESQA 854


>gi|269968397|ref|ZP_06182415.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269827024|gb|EEZ81340.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 525

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 8/169 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++   +  D ++GLLN       LG     N   S++  DID+FK +NDN+GH VGD +
Sbjct: 361 DKLQLDTLTDSMTGLLNRRGLDKVLGLFKQENTAFSVLALDIDHFKSVNDNYGHDVGDNL 420

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   +  +     +   + R GGEEF      +    A  +A  +R  +E     +    
Sbjct: 421 LREFAQLMKDQARSNDHLCRSGGEEFMMFLEKTDVNHAMDVAERIRHNVEQHDFQVVG-- 478

Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              +T+S G++    +  PI  ++  AD ALY AK +GRNR     D +
Sbjct: 479 --KVTVSLGVSHWKGNDTPIEAVMKDADNALYKAKHNGRNRTELGDDAQ 525


>gi|290957189|ref|YP_003488371.1| membrane associated phophodiesterase [Streptomyces scabiei 87.22]
 gi|260646715|emb|CBG69812.1| putative membrane associated phophodiesterase [Streptomyces scabiei
           87.22]
          Length = 1016

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 80/199 (40%), Gaps = 21/199 (10%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN------------EKLSIV 132
           ++   + E      ++   +  D L+ L N + F   +                   +++
Sbjct: 527 LNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTKRVRQALSGRRSSDRGAALRNTAVL 586

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS---- 188
           F D+D FK +ND  GH  GD+++   + +L           RLGG+EFAA  +G      
Sbjct: 587 FIDLDGFKAVNDTIGHQAGDELLVQAARRLQDAVRQGDTASRLGGDEFAALIVGDGSHDR 646

Query: 189 ---EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
              E+    LA+ LR  I  SQ     G  + +  S G++          ++  AD A+Y
Sbjct: 647 VDRERHILELADRLR--IALSQPYTIDGNDVRVAASIGVSFAEPGLGAGELLRNADLAMY 704

Query: 246 VAKKSGRNRVVCFSDIENN 264
            AK SG+ RV  +      
Sbjct: 705 RAKASGKGRVELYKPQMQQ 723


>gi|188580235|ref|YP_001923680.1| diguanylate cyclase [Methylobacterium populi BJ001]
 gi|179343733|gb|ACB79145.1| diguanylate cyclase [Methylobacterium populi BJ001]
          Length = 363

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/216 (30%), Positives = 103/216 (47%), Gaps = 6/216 (2%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK-ELFISYNRIS 101
             +A      + L P+          L++V I +   +    ++ SIL  E   ++  + 
Sbjct: 152 ALLAIALAICLPLLPWPEASA----RLAIVGIFVVDQISSIVLTTSILALEAERAHAALR 207

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +++R D L+G LN     ++ G       ++  D+D+FK IND FGH  GD V+   + +
Sbjct: 208 RMARTDALTGALNREGLAAAAGGDPGPAGVIVADLDHFKSINDRFGHAGGDAVLREFTRR 267

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
              +      + RLGGEEF     G +    A LA  LR  +  + +      +I +T+S
Sbjct: 268 SAGLLPEGALLARLGGEEFGIVLPGHAPNATAYLAERLRHAVGATPVPWRD-AAIPVTVS 326

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            G+A R   E +   I RAD+ALYVAK +GRNRV  
Sbjct: 327 VGVARRADGESLHEAIDRADRALYVAKTAGRNRVRV 362


>gi|158425190|ref|YP_001526482.1| hypothetical protein AZC_3566 [Azorhizobium caulinodans ORS 571]
 gi|158332079|dbj|BAF89564.1| hypothetical conserved protein [Azorhizobium caulinodans ORS 571]
          Length = 437

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFF 134
           +GY + S +  L  + + +S ++  D L+GL N   F         +       + ++  
Sbjct: 239 IGYFTHSDITPLKQAVSDLSAIAATDSLTGLANRRHFDQVFDEEWRRRQRDGTLIGLLLI 298

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           D+D+FKQ+ND +GH VGD  +  ++  +   +  +     R GGEEFA     +    A 
Sbjct: 299 DVDHFKQVNDQYGHMVGDACLRRVAHVIRGALLRSGDVAARHGGEEFAVLLPDTGLSGAQ 358

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSG 251
            +A  +R  +       +      IT S GI          +S  +  AD ALY AK  G
Sbjct: 359 AVARRIRAALAQEDWQATHPDLRAITTSIGICAGPPASGATVSDFVRCADAALYRAKNDG 418

Query: 252 RNRVV 256
           R+RV+
Sbjct: 419 RDRVM 423


>gi|146307752|ref|YP_001188217.1| diguanylate cyclase [Pseudomonas mendocina ymp]
 gi|145575953|gb|ABP85485.1| periplasmic/7TM domain sensor diguanylate cyclase [Pseudomonas
           mendocina ymp]
          Length = 638

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 10/179 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L +L  +  R+++L+R D L+GL N       L           + ++I+  D+D+FKQ+
Sbjct: 454 LHQLSNANLRLAELNRRDGLTGLFNRQTLSEELTRACARAERGKQSVAILMLDLDHFKQV 513

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +   + ++     +   + R GGEEF A    +S   A  LA  LR  
Sbjct: 514 NDRYGHLAGDACLRHAAQRIQQRLRSSDLLARFGGEEFVALLDNTSLDGALDLAEQLRDD 573

Query: 203 IENSQINISSGPSIHITISAGI-AERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
           +           SI +++S G+ A   H        +  AD+ALY AK  GRN+VV + 
Sbjct: 574 LARHPCPYQQ-HSIPLSLSIGLHAGVPHDPSCGEHWLDLADRALYRAKAGGRNQVVSYE 631


>gi|26986959|ref|NP_742384.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida KT2440]
 gi|24981572|gb|AAN65848.1|AE016213_4 sensory box protein [Pseudomonas putida KT2440]
          Length = 328

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 9/178 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
              + E       + +L+  D L+   N   F                 L+ +  DID F
Sbjct: 150 AEDITEKKQLEGELQRLATTDVLTQSSNRRHFFECAQQAFDSAREDGTPLAFLLLDIDDF 209

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND++GH  GD+V+  ++D    V       GR+GGEEFAA   G + Q A  +A  L
Sbjct: 210 KRINDSYGHQEGDQVLQHIADSGKAVLRRGDLFGRIGGEEFAAVFPGCTAQIAEQIAERL 269

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
           ++ I++   +     +  +T+S G+     ++  + ++  RAD A+Y AK+ G+N++V
Sbjct: 270 QRQIQHLSFSHGQ-QTYGVTVSQGLTGLTDEDVALDSLYARADAAMYQAKRQGKNQIV 326


>gi|114331433|ref|YP_747655.1| diguanylate cyclase [Nitrosomonas eutropha C91]
 gi|114308447|gb|ABI59690.1| diguanylate cyclase [Nitrosomonas eutropha C91]
          Length = 551

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 113/256 (44%), Gaps = 32/256 (12%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL---------LLGYI 85
           F  F++ +I I      Y+G +    L+ ++     +V  ++ I L          L  I
Sbjct: 296 FLEFVSILIIIVTAVALYMGHSIVTPLKQLINAVKGIVEGNLDIYLPAKRRDEVGQLTDI 355

Query: 86  SGSILKELFISYNRI--------------SQLSRIDCLSGLLNHSAFI-------SSLGS 124
              + + L   +  I               +LS  D L+GL N +          +    
Sbjct: 356 FNQMTRALRNKHIEIMTANQAMQQQNQLLQKLSITDGLTGLYNRTKLDTILSEQLARFKR 415

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           ++    ++  DIDYFK IND  GH VGD+++  ++  L+    T  +  R GG+EF    
Sbjct: 416 HDRPFCLLMIDIDYFKTINDKLGHIVGDRILVTVASVLLKSIRTIDYAARYGGDEFVVIL 475

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQA 243
             ++   A   A  +R  + ++ +     P+ HIT+S GI +  + +   + +I RAD A
Sbjct: 476 TETNSSAAIKTAERIRAEVNSACLAFKEHPA-HITLSIGITQSYYDDITPNDLIARADAA 534

Query: 244 LYVAKKSGRNRVVCFS 259
           LY AK+SGR+RV C  
Sbjct: 535 LYEAKESGRDRVHCAD 550


>gi|329905370|ref|ZP_08274109.1| hypothetical protein IMCC9480_2501 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547618|gb|EGF32413.1| hypothetical protein IMCC9480_2501 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 822

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 11/187 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           +S   + +  ++   ++ L+  D L+GL N   F   L          N  + ++F D+D
Sbjct: 376 VSHEDITDSKLAQKHLTYLAHYDNLTGLPNRVLFYDRLKQVLLQAERSNWTVGVMFIDLD 435

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA 196
           +FK +ND  GH  GD V+   S +++        VGRLGG+EF       ++ Q+AA+LA
Sbjct: 436 HFKAVNDTLGHAAGDTVLQQASRRILDSLRANDTVGRLGGDEFGVFLPDLATPQDAAMLA 495

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             + + +  S   + +G  + +T   GI            +I  AD A+Y AK+ GRN  
Sbjct: 496 GKITQAL--SLPFVIAGTELFVTPIIGITLYPRDGNTADVLISSADTAMYRAKELGRNGH 553

Query: 256 VCFSDIE 262
             F+   
Sbjct: 554 QFFTPHM 560


>gi|291614235|ref|YP_003524392.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1]
 gi|291584347|gb|ADE12005.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1]
          Length = 304

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 61/186 (32%), Positives = 88/186 (47%), Gaps = 12/186 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFF 134
           L  IS   + +  ++  RI  LS  D L+GL N   F   L +   + S        V F
Sbjct: 117 LFVISHHNITQRKLAEERIEFLSLHDPLTGLANRRHFNQFLNNAWRRSSRSRSLLSFVMF 176

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAA 193
           D+D+FK  ND  GH  GD+ +  +   L            R GGEEF     G+  ++AA
Sbjct: 177 DLDHFKDYNDELGHLAGDECLIKVGQVLRAAAGRPGDLAVRYGGEEFGLLLEGTCLEDAA 236

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSG 251
            +A+ +R+ +    +         IT+SAG+A    +   S   +I  AD+ALY AK+ G
Sbjct: 237 KIADAIRQNVHELDMRYRKTRL--ITVSAGVASVIPEGEQSEIFLIREADKALYRAKQQG 294

Query: 252 RNRVVC 257
           RNRVVC
Sbjct: 295 RNRVVC 300


>gi|161620312|ref|YP_001594198.1| diguanylate cyclase [Brucella canis ATCC 23365]
 gi|161337123|gb|ABX63427.1| diguanylate cyclase (GGDEF) domain [Brucella canis ATCC 23365]
          Length = 378

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS--- 130
           L++G I+     I  +   +  R++  +  D L+ L N       ++   S  + LS   
Sbjct: 184 LMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGKLLTQKKSARDGLSRDG 243

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSS 188
            ++  D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF      G+S
Sbjct: 244 FLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTS 303

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++  I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK
Sbjct: 304 KEQTDIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAK 362

Query: 249 KSGRNRVVCFSD 260
             G+NR   F +
Sbjct: 363 SKGKNRFEYFEE 374


>gi|146280403|ref|YP_001170556.1| GGDEF domain-containing protein [Pseudomonas stutzeri A1501]
 gi|145568608|gb|ABP77714.1| GGDEF domain protein [Pseudomonas stutzeri A1501]
          Length = 456

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 82/178 (46%), Gaps = 9/178 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           +L  LF   N +   +  D L+ LLN           +      N    ++  D+D+FK+
Sbjct: 280 LLDSLFEQANDLE--AGRDVLTRLLNRKFLPVVMAKEVLYARQSNNTFGVLAIDVDHFKR 337

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH  GD+++  +   L        +  RLGGEEF    +     +A   A  LR+
Sbjct: 338 INDTHGHDAGDQILQQVGALLASNTRGGDYAFRLGGEEFLLVLVDIDTNKALAAAEKLRE 397

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I      +SSG  + +T+S G+A          ++ +ADQALY AK  GRNR V ++
Sbjct: 398 RIAREHFRLSSGEVLQVTVSIGMAVHDGHPDYERLLQQADQALYQAKHGGRNRCVLYA 455


>gi|89902652|ref|YP_525123.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Rhodoferax ferrireducens T118]
 gi|89347389|gb|ABD71592.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Rhodoferax ferrireducens T118]
          Length = 853

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 80/191 (41%), Gaps = 16/191 (8%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
            + + E   S + I QL+  D L+ L N    +  L           +  +++F D+D F
Sbjct: 414 STDITEHKRSEDAIHQLAFYDPLTLLPNRRFLMERLQQTLKANERQQQCGALLFIDVDNF 473

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA------LGSSEQEAA 193
           K +ND  GH +GD+++  ++ +L         + R G +EF          L ++ ++  
Sbjct: 474 KDLNDTLGHAMGDELLRQMAVRLSTCTRAEDTLARQGSDEFVLLLCDLSPDLDAALEQTR 533

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGR 252
            +A  + + I   +  +        T+S GIA           +  +AD A+Y AK  GR
Sbjct: 534 HVAQKILQHIA--EPYLLETRHYQSTVSIGIAMFGDTPTSRDELFKQADLAMYRAKAEGR 591

Query: 253 NRVVCFSDIEN 263
           N +  F+    
Sbjct: 592 NALCFFNPAMQ 602


>gi|325276964|ref|ZP_08142645.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas sp. TJI-51]
 gi|324097906|gb|EGB96071.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas sp. TJI-51]
          Length = 818

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 14/189 (7%)

Query: 83  GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS 130
           G ++G +L    ++  R     +S  +  D L+GL N   F   L            + S
Sbjct: 348 GQVAGIVLVLHDMTQERQYIANLSWQATHDALTGLANRREFEYRLEQALNGLARQAGRHS 407

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F D+D FK +ND  GH  GD+++  +   L         + RLGG+EF          
Sbjct: 408 LMFLDLDQFKLVNDTCGHAAGDELLRHICAVLQSGLREGDTLARLGGDEFGVLLENCPSD 467

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKK 249
           +A  +A  LR+++++    +  G     T+S G+         +   +  AD A Y+AK+
Sbjct: 468 QAERIAEQLRQLVQSLHF-VWKGRPFVTTVSIGLVHMAQAPSTLEASLRAADMACYMAKE 526

Query: 250 SGRNRVVCF 258
            GRNRV  +
Sbjct: 527 KGRNRVQVY 535


>gi|262279764|ref|ZP_06057549.1| WspR [Acinetobacter calcoaceticus RUH2202]
 gi|262260115|gb|EEY78848.1| WspR [Acinetobacter calcoaceticus RUH2202]
          Length = 420

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 110/242 (45%), Gaps = 13/242 (5%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           H   +       +F   ++F A+     +G   F     IL  ++S ++ S   SL L  
Sbjct: 170 HMLYVGLIAAICVFSLLILFQADCDYIALGRALFGSC--ILGFSISTMLTSRERSLFLNN 227

Query: 85  ISGSILKE-LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDI 136
               + ++ L I  + +  LS+ D L+ + N   F                 L+++F DI
Sbjct: 228 QLAELNEQILRIEASELLHLSQQDALTKISNRRTFDEMFDFFYYRAKQEQRPLAVLFIDI 287

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK  ND +GH +GDKVI+ ++  +        FV R GGEEF      +  Q A  +A
Sbjct: 288 DFFKNYNDCYGHQMGDKVISSIASAIKNSIRHVDFVARYGGEEFVVLLPKTPAQGAYAVA 347

Query: 197 NDLRKIIENSQINISSG-PSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRN 253
            ++ K IE   I  ++   S H+TIS G              +I+ ADQALY AK+ GRN
Sbjct: 348 ANIYKAIERQAIPHAASLVSQHVTISLGFTVYTEGLRVTQENLIHAADQALYRAKQLGRN 407

Query: 254 RV 255
           ++
Sbjct: 408 QI 409


>gi|239994638|ref|ZP_04715162.1| GGDEF domain protein [Alteromonas macleodii ATCC 27126]
          Length = 994

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 107/226 (47%), Gaps = 20/226 (8%)

Query: 50  LFYIGLTPFYG--LEYILVENLSLVIISITISLLLGYISGS----------ILKELFISY 97
           L  + + P++   +  + +  L +++IS  + L +  +               ++L    
Sbjct: 769 LEIVVVPPWWDKPIWRVAITLLGMLLISSMVWLRIASLKKRSAELALKVEEKTRDLEAVV 828

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
            +++QLS  D L+GL N   F             +N   S++  DID+FK+IND +GH V
Sbjct: 829 EKLTQLSTQDALTGLKNRRYFTQRAKAAWQNYKRHNHTFSLLIVDIDFFKRINDEYGHHV 888

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  ++  L         + R GGEEF         QEA  +A  LRK + + +I+ 
Sbjct: 889 GDTVLIKIARILEDNLRESDVIARWGGEEFLILLPSLKVQEAFWVAEKLRKTVADYEIDA 948

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               S+  TI+ G+A+    + +   I+  D+ LYV K+SGRN V+
Sbjct: 949 PP-YSVSATITCGVADIRDYDSVEACIHAIDKKLYVGKESGRNAVI 993


>gi|239820362|ref|YP_002947547.1| diguanylate cyclase [Variovorax paradoxus S110]
 gi|239805215|gb|ACS22281.1| diguanylate cyclase [Variovorax paradoxus S110]
          Length = 512

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 100/244 (40%), Gaps = 24/244 (9%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY-ISGSILKEL 93
           + +F++  +    I   +   T ++    +L   LSL++  I   L+  + +      EL
Sbjct: 264 YPLFVSAALSKDEILANWWRDTLWHSGGVVL---LSLIVGFIGWRLVRQFQLQTRTEAEL 320

Query: 94  FISYNRISQL-------SRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYF 139
             + + +  L       +  D L+GL N   F        S        L+++  D+D F
Sbjct: 321 RQARDALETLNKTLNTLAMEDGLTGLANRRQFDVALDSEYSRAARNASTLALIMMDVDCF 380

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVV--FGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           KQ ND +GH  GD+ +  +   +  V          R GGEE A     +    A +LA 
Sbjct: 381 KQYNDIYGHAAGDECLQTIGRTIARVASRRPGDLAARYGGEELAVLLPNTDVAGAVMLAE 440

Query: 198 DLRKIIENSQINISSGPSIHITISAGI-AERCH---KEPISTIIYRADQALYVAKKSGRN 253
            +R  +   +I  +      +T+SAG+ A             +I  AD+ALY AK  GRN
Sbjct: 441 RIRSAVRELKIEHAGTADGFVTLSAGVDALSPQAGIGGQPKELIRSADKALYAAKSGGRN 500

Query: 254 RVVC 257
           RV  
Sbjct: 501 RVCA 504


>gi|209548399|ref|YP_002280316.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209534155|gb|ACI54090.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 765

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/193 (27%), Positives = 89/193 (46%), Gaps = 11/193 (5%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           I +  L  +I+G  + E     +RI  ++  D L+GL N +     L         +  K
Sbjct: 311 IKLVALATHIAGIAI-ERKRVDDRIHFMAHHDDLTGLPNRAFLKERLANILDQARRHTRK 369

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +++ + D+D FK IND  GH  GD+V+   + ++         V RLGG+EF    +  S
Sbjct: 370 VTVAYIDLDNFKDINDGRGHAAGDEVLKETAARMANSIRASDMVVRLGGDEFLVVLVHQS 429

Query: 189 EQEAAILANDLRKIIENSQINI-SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYV 246
             +A  +   LR++ +     I S G  I +T S G+A           ++  AD+A+Y 
Sbjct: 430 SHDAG-ITRRLRELQKAINRPIPSEGGEITVTSSIGVAAFPFDGATSEELLANADRAMYR 488

Query: 247 AKKSGRNRVVCFS 259
           AK+ GRN +    
Sbjct: 489 AKELGRNTLQHHD 501


>gi|158521388|ref|YP_001529258.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3]
 gi|158510214|gb|ABW67181.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3]
          Length = 368

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 66/253 (26%), Positives = 110/253 (43%), Gaps = 20/253 (7%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYIL---------VENLSLVIIS 75
            +FM+   + FSI       IA++F F + L      E +L         V   S++ + 
Sbjct: 118 WSFMLP-PVLFSILGDRRGMIASLFFFCLSLILMTLPETVLPSPPYSTHIVARYSVIYVV 176

Query: 76  ITISLLLGYISGSIL-KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNE 127
           +T+S+     S  +L + +    +R    S+ D L+GL N       +            
Sbjct: 177 LTLSVYYYETSHQMLIRYIQREKDRFESASKRDPLTGLANRRDISERMENERERQARSGR 236

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
             +++  DID FKQ+ND  GH  GD V+  ++  +           R GGEEF    + S
Sbjct: 237 PFALILGDIDNFKQLNDTHGHDCGDDVLKRVAGLMKNQVRGIDCPSRWGGEEFLILLVES 296

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYV 246
             + A  +A  +R+ I+N+         + +T++ G++     +  +   I RADQALY 
Sbjct: 297 DREGAYTVAGRIREKIQNTDFTFKK-EKMAVTMTFGLSVFNGGDDTVEKCIKRADQALYD 355

Query: 247 AKKSGRNRVVCFS 259
            K  G+NRVV   
Sbjct: 356 GKHQGKNRVVVAD 368


>gi|56459537|ref|YP_154818.1| signal protein [Idiomarina loihiensis L2TR]
 gi|56178547|gb|AAV81269.1| Signaling protein with a sensor domain, CHASE, GGDEF and EAL
           domains [Idiomarina loihiensis L2TR]
          Length = 712

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 97/206 (47%), Gaps = 16/206 (7%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRIS-------QLSRIDCLSGLLNHSAFISSL 122
           S+  I I   LLL ++  + +  L  + +R+          +  D ++ L N  AF+  L
Sbjct: 247 SIYWIIIVAGLLLSFLMTAFMYNLVTAQSRLRSALVTIDHQAHFDSITDLPNRRAFVDYL 306

Query: 123 GSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
               +K      +I+F D+D+FK++NDN GH  GD+++  +SD+L        F+ R+GG
Sbjct: 307 DQLTQKGREQHFAILFIDLDHFKEVNDNLGHDAGDELLVSVSDRLRNQLRGSDFIARIGG 366

Query: 178 EEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           +EF       +S Q    LA+ + + +     N+     I  T S GIA         S 
Sbjct: 367 DEFVVVINRFTSHQIINDLASQINRQLSE-PFNLRQNQ-IQTTCSIGIALYPDDGIKASE 424

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDI 261
           ++  AD A+Y AK +GR     F+D 
Sbjct: 425 LLKNADLAMYAAKTAGRRTHYFFNDE 450


>gi|13472768|ref|NP_104335.1| hypothetical protein mlr3171 [Mesorhizobium loti MAFF303099]
 gi|14023515|dbj|BAB50121.1| mlr3171 [Mesorhizobium loti MAFF303099]
          Length = 832

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 100/208 (48%), Gaps = 16/208 (7%)

Query: 70  SLVIISITISLLL--GYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           S+V +++T + LL  G + G++L             R+S  +  D L+GL +   F S L
Sbjct: 336 SVVPVALTGAPLLVSGDVVGAVLAFHDMTREEDYIERLSWQASHDALTGLADRRDFESRL 395

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                       + ++++ D+D FK +ND  GH  GD+++  +S  L         + RL
Sbjct: 396 ERTIVELRGQPRQHALMYLDLDQFKLVNDTCGHAAGDQLLRQISALLTCELRPGDVLARL 455

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIS 234
           GG+EF    +     EA  +A  LR  ++N    +  G  ++ ++S G+ E  + +  I 
Sbjct: 456 GGDEFGVLLVDCEADEACDIAERLRAAVQNLHF-VWDGRPLNTSVSVGMVEIANAQVTIE 514

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIE 262
             +  AD A Y+AK+ GRNRV   SD +
Sbjct: 515 ETLRAADVACYMAKEKGRNRVQIHSDCD 542


>gi|327478618|gb|AEA81928.1| GGDEF domain-containing protein [Pseudomonas stutzeri DSM 4166]
          Length = 456

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 82/178 (46%), Gaps = 9/178 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           +L  LF   N +   +  D L+ LLN           +      N    ++  D+D+FK+
Sbjct: 280 LLDSLFEQANDLE--AGRDVLTRLLNRKFLPVVMAKEVLYARQSNNTFGVLAIDVDHFKR 337

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH  GD+++  +   L        +  RLGGEEF    +     +A   A  LR+
Sbjct: 338 INDTHGHDAGDQILQQVGALLASNTRGGDYAFRLGGEEFLLVLVDIDTNKALAAAEKLRE 397

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I      +SSG  + +T+S G+A          ++ +ADQALY AK  GRNR V ++
Sbjct: 398 RIAREHFRLSSGEVLQVTVSIGMAVHDGHPDYERLLQQADQALYQAKHGGRNRCVLYA 455


>gi|332162043|ref|YP_004298620.1| hypothetical protein YE105_C2421 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666273|gb|ADZ42917.1| hypothetical protein YE105_C2421 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 467

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 11/186 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVF 133
           ++ Y S   + EL  S + +  L++ D L+G+ N   F        +K       LS++ 
Sbjct: 276 VIWYGSFFDITELKQSESILKALAQTDVLTGVANRRHFDDIYQHIWQKTQTEGGTLSVLM 335

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            D D FK  ND +GH +GD  +  + + L   + G    + R GGEEF      S+  +A
Sbjct: 336 IDFDNFKNFNDLYGHAMGDVCLKSIVETLAKSIRGGSDILARYGGEEFIVLLAPSNLTDA 395

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKK 249
             +A  +R  IE   I     P   +TIS G+A             +   AD+ALY AK 
Sbjct: 396 TAVAERMRHSIEELDIPHGMSPHGRVTISVGVASVSDPGKYLSAKDLSDAADKALYRAKT 455

Query: 250 SGRNRV 255
           +G+N+V
Sbjct: 456 AGKNQV 461


>gi|323495780|ref|ZP_08100850.1| membrane associated GGDEF protein [Vibrio sinaloensis DSM 21326]
 gi|323319247|gb|EGA72188.1| membrane associated GGDEF protein [Vibrio sinaloensis DSM 21326]
          Length = 572

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 8/168 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHP 149
             ++   +  D L+GL N   F   L S           LS++  D+D+FK+ NDNFGH 
Sbjct: 377 QEKLRSQAMRDPLTGLYNRRYFEEVLDSEWSKANQDKSPLSLLMLDLDHFKRFNDNFGHD 436

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  +++ L           RLGGEE A     +   +A  LAN +   +    ++
Sbjct: 437 AGDYVLKEVANLLTRNTLDTHVACRLGGEELAIICPETESHDALQLANQIVDEVRELHLD 496

Query: 210 ISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
           +       + +S G+            ++  AD ALY AK +GR++ +
Sbjct: 497 LKGLSLGQLGVSIGVTTFPDLNGSPEELVKAADTALYQAKDNGRSQAI 544


>gi|307946357|ref|ZP_07661692.1| diguanylate cyclase [Roseibium sp. TrichSKD4]
 gi|307770021|gb|EFO29247.1| diguanylate cyclase [Roseibium sp. TrichSKD4]
          Length = 651

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 60/169 (35%), Positives = 82/169 (48%), Gaps = 8/169 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHP 149
            + +   S  D L+GL N   F+ SL S  EK       LS++  D+D+FK  NDN GH 
Sbjct: 444 RDELHNQSIRDPLTGLFNRRHFVESLRSKIEKARHKGHSLSLISIDVDHFKTFNDNNGHD 503

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  +   L   F       R+GGEEF      ++ +EA   A  LR++IE   + 
Sbjct: 504 AGDMVLRAVGTALEQQFEGDDLPCRIGGEEFMVLLPDATSEEAMERAEALRQVIEKITVR 563

Query: 210 ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                   ITIS+G+A    H      +I  AD ALY +K SGRN+V  
Sbjct: 564 YGEKNLPKITISSGVASCPDHGMMPQDLIKVADDALYRSKDSGRNQVTM 612


>gi|253559434|gb|ACT32398.1| putative diguanylate cyclase [Pseudomonas fluorescens]
          Length = 441

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 70/284 (24%), Positives = 120/284 (42%), Gaps = 36/284 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIF------LFYIG 54
           + +S    L +WL  E    +     +M    + + +F A  + +A  +      L    
Sbjct: 153 LEQSFPQALLLWLS-EIRWPALHGA-WMSLIQLSYPMFAAAFLLLAWQYWRNPRPLHAAQ 210

Query: 55  LTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           L    GL ++L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL 
Sbjct: 211 LVGLLGLFWMLPKTFILPFTLNIMCSQVMLMIAAAVAHEAY-------QMAFRDELTGLP 263

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A    +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  + G      
Sbjct: 264 GRRALNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKIGGGGRAYR 323

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-------------------GP 214
             G EEFA    G +  E       +R+ IE   I + +                     
Sbjct: 324 YGG-EEFALVFAGKTIDECMPHLEVIRQSIETYAIQLRNPDSRPQDDQQGRQRRSGAGAS 382

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S+ +T+S G+AER  +     ++  ADQALY AK +GRN V+ F
Sbjct: 383 SVSVTVSIGVAERLEQRTPEEVLKSADQALYNAKGAGRNCVIAF 426


>gi|224370937|ref|YP_002605101.1| GGDEF domain family protein [Desulfobacterium autotrophicum HRM2]
 gi|223693654|gb|ACN16937.1| GGDEF domain family protein [Desulfobacterium autotrophicum HRM2]
          Length = 537

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 11/205 (5%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G+  + ++ L + I  + ++ +  ++    +         + + +  D L+ L N + F+
Sbjct: 330 GMRSLFLKLLFMAIALLPVTTIPSWLIAKAIIRRKSYLIELYRSANYDKLTDLPNRAMFM 389

Query: 120 SSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
                       Y  KL+++F D+D FK +ND  GH  GD+++  ++ +L         V
Sbjct: 390 DRFNEIFKQSRRYKRKLALLFIDLDGFKSVNDTLGHDAGDELLIEVAKRLKGCVRDSDVV 449

Query: 173 GRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
            RLGG+EF       +S  +  + A  + + +         G    I+ S G++    H 
Sbjct: 450 ARLGGDEFTVIFSTITSLDDPKLGAQKILQNLAA--PFSIKGHDTRISASIGMSIYPDHG 507

Query: 231 EPISTIIYRADQALYVAKKSGRNRV 255
             I  ++ +AD A+Y+AK++G+N  
Sbjct: 508 NDIEVLLKKADNAMYLAKEAGKNNY 532


>gi|153870656|ref|ZP_02000010.1| sensory box/GGDEF family protein [Beggiatoa sp. PS]
 gi|152072877|gb|EDN69989.1| sensory box/GGDEF family protein [Beggiatoa sp. PS]
          Length = 439

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 90/187 (48%), Gaps = 12/187 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           +     +  R++ L+  D L+GL N + F   +             ++++FFD+D FK +
Sbjct: 1   MTARKQTEQRLAYLAYYDDLTGLPNRTLFYERVNRAIYHARQNLSMVAVIFFDLDGFKYV 60

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           ND +GHP+GD ++  ++ +L+         + RLGG++F        S +     A+++ 
Sbjct: 61  NDTWGHPIGDLLLKKVAKRLMQCTLCQSDAMARLGGDDFTMVLENINSPKLIEQFAHNIL 120

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++++       +G    IT S GI+      + + T++ +AD ALY AK+SG+N    F+
Sbjct: 121 EVVQ--PPFDLNGHETFITASIGISLYPNDGKEVDTLLKQADAALYHAKESGKNNYQFFT 178

Query: 260 DIENNTC 266
                  
Sbjct: 179 PQMKKHA 185


>gi|297538054|ref|YP_003673823.1| PAS/PAC sensor-containing diguanylate cyclase [Methylotenera sp.
           301]
 gi|297257401|gb|ADI29246.1| diguanylate cyclase with PAS/PAC sensor [Methylotenera sp. 301]
          Length = 331

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 11/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           + + +    +   R+  L+  D L+ + N + F   L           + L+++F D+D 
Sbjct: 146 THTDITARKLLETRLENLAHFDALANVPNRTLFNDRLKLALSYAKREKKMLAVMFIDLDL 205

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAN 197
           FK+IND +GH  GD V+  +S QLV        V R+GG+EF        E ++  ++A+
Sbjct: 206 FKEINDLYGHETGDIVLKKVSRQLVSCVRESDTVARMGGDEFVILLPIIDEIEDVKLVAS 265

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            + + +    I ++    +HIT S GIA    H +    ++  AD A+Y AK SG+N+  
Sbjct: 266 KIVEAVAQ-PIKVAKTH-LHITCSIGIAVYPQHGKDEKLLVINADMAMYQAKNSGKNQAK 323

Query: 257 CFSDIE 262
            F +  
Sbjct: 324 FFEEAM 329


>gi|206601829|gb|EDZ38312.1| Diguanylate cyclase/phosphodiesterase [Leptospirillum sp. Group II
           '5-way CG']
          Length = 720

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 97/225 (43%), Gaps = 13/225 (5%)

Query: 51  FYIGLTPFYGLEYILVENLS---LVIISITISLLLGYISGSILKELFISYNRISQLSRID 107
           +   L+   G+ Y +   L+     +I   +S+++  I    +K +  + + +   S  D
Sbjct: 242 YAADLSGILGIAYGVTRELTPQEQSVIQSILSVMVMVIGS--IKVISRTLSELEYYSTHD 299

Query: 108 CLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+GL N   F       I     +  K  ++  D+D FK +ND++GH  GD+V+  L  
Sbjct: 300 PLTGLHNRRYFNEMIGYEIQRSERHGHKFCLLMIDLDNFKDVNDSYGHLDGDRVLNQLGK 359

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            +         V R GG+EF      +S      LA  +R+ I+      +   S H+T+
Sbjct: 360 IVTGTVRKGDIVCRFGGDEFVVLLSETSLSGGCTLAETVREAIQTWSFGTTDRGSFHVTV 419

Query: 221 SAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           S GI A       I  ++   D  LY AK+ GRN V    D+  +
Sbjct: 420 SVGIVAYPQDGNQIEDLLAGLDLVLYRAKERGRNTVASSRDLRTD 464


>gi|114048973|ref|YP_739523.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella sp. MR-7]
 gi|113890415|gb|ABI44466.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella sp. MR-7]
          Length = 572

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 11/187 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            S+   L  S+ ++ +L+  D L+ L+N   F       I+     N+ L+++  D+D F
Sbjct: 123 ASMALALRNSHQKLKELAEHDSLTKLMNRYGFELCLNRAIARAKRSNDFLAVILLDLDDF 182

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILAND 198
           K IND  GH  GD ++  ++ +L  V      + RLGG+EF      +  +    I+AN 
Sbjct: 183 KAINDTLGHQTGDILLVKVASRLSSVLRDGDVIARLGGDEFVVLVTDNDYKYFPMIVANR 242

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           L K  E  ++       + I  S G+A         S ++  AD A+Y AKK GRN++  
Sbjct: 243 LLKAFE--EVFGLGDNDVMIGASIGVAFYNEAASNSSELMKCADIAMYRAKKMGRNQIQF 300

Query: 258 FSDIENN 264
           +S+  + 
Sbjct: 301 YSEALDR 307


>gi|109896402|ref|YP_659657.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Pseudoalteromonas atlantica T6c]
 gi|109698683|gb|ABG38603.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Pseudoalteromonas atlantica T6c]
          Length = 863

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 12/180 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQ 141
           ++E      ++   +  D L+ L N + F + L           +   ++VF D+D FKQ
Sbjct: 427 IEERKAIQQKLVHDAHHDALTDLPNRTMFNARLSQALANKKRYQHNNFAVVFIDLDRFKQ 486

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           IND  GH  GD  +  ++ ++         + RLGG+EF        S ++  I++  + 
Sbjct: 487 INDTIGHHAGDSFLIEVASRINHCIRGHDLLARLGGDEFVILLDNFDSPEDVEIISTRII 546

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + I      +  G  I    S GIA         S I+  AD A+Y AK  GR + V F 
Sbjct: 547 ESIAT--PFVLDGREIFSGASIGIAYLESGYRSASEIVRDADAAMYQAKSQGRGQYVVFD 604


>gi|332091751|gb|EGI96831.1| hypothetical protein SB521682_1541 [Shigella boydii 5216-82]
          Length = 410

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 238 DITEQKRLEEQLEHATHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 296

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 297 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 356

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 357 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 407


>gi|323489040|ref|ZP_08094276.1| diguanylate cyclase with PAS/PAC sensor [Planococcus donghaensis
           MPA1U2]
 gi|323397265|gb|EGA90075.1| diguanylate cyclase with PAS/PAC sensor [Planococcus donghaensis
           MPA1U2]
          Length = 197

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 13/185 (7%)

Query: 85  ISGSILKELFISYNRISQL-----SRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           + G +++ + I+  ++++L     +  D L+ L N   F   L          N  +S++
Sbjct: 13  VEGVVIRHVDITQQKLTELQLKEHAEKDSLTSLFNRRYFQEQLKKEVRSAHQKNTPISLL 72

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           + D D FK+IND +GHP GD+V+  L+ Q+           R+GG+EFA     +++ + 
Sbjct: 73  YIDTDNFKEINDTYGHPTGDQVLKQLAMQITKFTRPSDTTARIGGDEFAVILPNTNKADL 132

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            ++A  L + I+N  I       I +T+S G     +   ++ +I   D ALY AK  G+
Sbjct: 133 ELIATRLSQEIQNLNIQ-EQNRQIDVTVSIGGKSFTNNSSLNCMIEWVDDALYAAKDKGK 191

Query: 253 NRVVC 257
           N+VV 
Sbjct: 192 NQVVI 196


>gi|187732577|ref|YP_001880181.1| sensory box-containing diguanylate cyclase [Shigella boydii CDC
           3083-94]
 gi|187429569|gb|ACD08843.1| sensory box-containing diguanylate cyclase [Shigella boydii CDC
           3083-94]
          Length = 430

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D + FK
Sbjct: 258 DITEQKRQEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTNRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLIPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|323492042|ref|ZP_08097207.1| c-di-GMP phosphodiesterase A-related protein [Vibrio brasiliensis
           LMG 20546]
 gi|323313771|gb|EGA66870.1| c-di-GMP phosphodiesterase A-related protein [Vibrio brasiliensis
           LMG 20546]
          Length = 683

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 116/250 (46%), Gaps = 14/250 (5%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS-LVIISITISLLLGY 84
           T ++ F +F +I + +++ +         L         L +N S L   ++     LG 
Sbjct: 160 TQILLFDLFRNILLTSILLMFFYQKLSKPLVTLIDWVRSLQDNKSDLPPQTLNRDDELGQ 219

Query: 85  ISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFF 134
           ++ +   + K+   +  +++QL+  D L+GL N S  +  LG         N+  ++ + 
Sbjct: 220 LAKTFHTLWKDREAAEVKLNQLAYYDSLTGLANRSLLLQLLGKSIDDANTSNQAGALFYL 279

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND+ GH +GD +I  +S ++     +     R+GG+EFA     +S ++A  
Sbjct: 280 DLDRFKTINDSLGHTIGDNLIKAISKRIEAWLKSDFTAARIGGDEFALLLPNTSTEKAHE 339

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRN 253
           LA  L  ++ N          ++ T+S GIA           ++ +AD ALY AK +GRN
Sbjct: 340 LAQQLLALVSN--PYSIDDHQLYCTVSVGIAVFPSVGSTNIDVLRQADTALYRAKVAGRN 397

Query: 254 RVVCFSDIEN 263
           + + +     
Sbjct: 398 KYMFYEPEMQ 407


>gi|261756402|ref|ZP_06000111.1| GAF/GGDEF domain-containing protein [Brucella sp. F5/99]
 gi|261736386|gb|EEY24382.1| GAF/GGDEF domain-containing protein [Brucella sp. F5/99]
          Length = 364

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 91/192 (47%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS--- 130
           L++G I+     I  +   +  R+   +  D L+ L N       ++   S  + LS   
Sbjct: 170 LMVGQIAVELSMIAVDTAQTQERLVSQAMHDDLTQLPNRRYIGKLLTQKKSARDGLSRDG 229

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SS 188
            ++  D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF     G +S
Sbjct: 230 FLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGDTS 289

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++  I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK
Sbjct: 290 KEQTDIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAK 348

Query: 249 KSGRNRVVCFSD 260
             G+NR   F +
Sbjct: 349 SKGKNRFEYFEE 360


>gi|317048285|ref|YP_004115933.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pantoea sp. At-9b]
 gi|316949902|gb|ADU69377.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pantoea sp. At-9b]
          Length = 661

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 16/189 (8%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      +   +  +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRVLANTDTVTGLPNRNAIHQQISLALETAKGAQTGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           ++ND +GH  GD+++  +S  ++   G    + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KVNDAYGHMFGDQLLQAVSLAILSCLGKDQTLARLGGDEFVVLAENTSQAALEAMASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             LR+      I + SG       S GIA    H E   ++I  AD A+Y AK++GR + 
Sbjct: 339 ERLRQPFRIGLIEVYSG------CSLGIALAPLHGEDRESLIRNADTAMYHAKENGRGKF 392

Query: 256 VCFSDIENN 264
             F+   N 
Sbjct: 393 CVFASEMNQ 401


>gi|218438586|ref|YP_002376915.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7424]
 gi|218171314|gb|ACK70047.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7424]
          Length = 1015

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 84/187 (44%), Gaps = 12/187 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDY 138
              + E  ++  ++   +  D L+ L N    +  + +  ++         +++F D+D 
Sbjct: 565 NRDITERKLAQFQLEHNALHDALTELPNRLLLMERIQAAIQRAKRKPHYHFALLFIDLDR 624

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILAN 197
           FK IND  GH VGD ++  ++ +L     +   V RLGG+EF        E+ +A  +  
Sbjct: 625 FKTINDTLGHLVGDHLLVAIATRLQHCVRSGDTVARLGGDEFIILLDDLLEESDAFPITE 684

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            +   I+  +  + +   I  + S GI       E  + ++  AD A+Y AK+ G++R  
Sbjct: 685 RILGRIK--EPLVINNQQIQTSASIGIVFNRDGNESETDLLRNADLAMYSAKEQGKSRYA 742

Query: 257 CFSDIEN 263
            F+   +
Sbjct: 743 VFNPTMH 749


>gi|209886005|ref|YP_002289862.1| diguanylate cyclase/phosphodiesterase [Oligotropha carboxidovorans
           OM5]
 gi|209874201|gb|ACI93997.1| diguanylate cyclase/phosphodiesterase [Oligotropha carboxidovorans
           OM5]
          Length = 907

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 8/187 (4%)

Query: 83  GYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDY 138
           G++S    + E   +  RI+ ++R D L+ L N + F   L      +E L+++  D+D 
Sbjct: 460 GWVSTFEDITERQRTEERIAHMARYDALTDLPNRTMFRDHLETMLRQSEPLAVLSIDVDE 519

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LAN 197
           FKQ+ND  GH VGD+++  ++ ++         V RLGG+EFA    G  E+   I L  
Sbjct: 520 FKQVNDTLGHFVGDELLVAIAGRVSDCMEPGDLVARLGGDEFAIVRHGVRERADLIPLIE 579

Query: 198 DLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +   I         G  +++  S G+A   C    +  ++  AD ALY AK SGR    
Sbjct: 580 RVHAAIRL--PYSCVGHRLNVDASIGVAVSPCDGSELEGLLRNADLALYAAKGSGRRTYR 637

Query: 257 CFSDIEN 263
            F     
Sbjct: 638 FFEPEMQ 644


>gi|294665677|ref|ZP_06730953.1| sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604572|gb|EFF47947.1| sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 597

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 57/192 (29%), Positives = 86/192 (44%), Gaps = 9/192 (4%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SY 125
           + S+T++          L  L +    + Q S  D L+GL N      +L          
Sbjct: 398 LASLTVAEAAAEQLSLALHNLRL-RETLRQQSIRDPLTGLYNRRYLEETLSHELARCTRR 456

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              LS++  D+D+FK+ ND  GH  GD+V+A + + L+          R GGEE      
Sbjct: 457 ALPLSVLMLDVDHFKRFNDLHGHSGGDRVLAAIGELLLAQTCGEDICCRYGGEELTIILP 516

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
                 A ++A  LR  IE  Q+         +T S G A    H   +++++ RAD AL
Sbjct: 517 EVDLPTACMMAEKLRAGIEALQVMGDGVCLPKVTASFGAASFPAHASTVASLLQRADAAL 576

Query: 245 YVAKKSGRNRVV 256
           Y AK+ GRN+VV
Sbjct: 577 YRAKQGGRNQVV 588


>gi|253997127|ref|YP_003049191.1| PAS/PAC sensor-containing diguanylate cyclase [Methylotenera
           mobilis JLW8]
 gi|253983806|gb|ACT48664.1| diguanylate cyclase with PAS/PAC sensor [Methylotenera mobilis
           JLW8]
          Length = 569

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 20/192 (10%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + +     + + QL+  D L+ L N       L              +++F D+D FK 
Sbjct: 376 DITDRKQLEDEVRQLAFYDALTTLPNRRLLKDRLNQTMSLSKRSGRYCALMFLDLDNFKP 435

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA------LGSSEQEAAIL 195
           IND +GH  GD ++  +++++         V R GG+EF             S Q+A  +
Sbjct: 436 INDTYGHAFGDALLLEVAERIKSCVRQTDTVARFGGDEFVVLLGTLTTDKEKSVQQANRI 495

Query: 196 ANDLRKIIENSQI------NISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAK 248
           A  +R  +    +      +  S      + S G+     H      ++ RAD A+Y AK
Sbjct: 496 AEKIRNALLAPYLLSLNTHDAKSTIEHLCSASIGVVVFVNHNSNEEEVLKRADDAMYAAK 555

Query: 249 KSGRNRVVCFSD 260
            +GRN++   SD
Sbjct: 556 AAGRNQIRLDSD 567


>gi|237801383|ref|ZP_04589844.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331024242|gb|EGI04299.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 318

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 24/190 (12%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
            L ++ ++++ L++ D L+GL N      S+     +        S++  DID+FK+ ND
Sbjct: 122 RLKMAMDQLNLLAQTDGLTGLANRRFLDQSIEREWLRVRRNQGAFSLLLLDIDFFKRYND 181

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD+ +  ++  L      +   V R GGEEFA     +  + A  +A D+ + I
Sbjct: 182 RYGHLQGDECLISIAHALRCCVHRSTDLVARYGGEEFAVLLPDTGAEGACRMAEDIVQHI 241

Query: 204 ENSQINISSGPSIHITISAGIAE----------------RCHKEPISTIIYRADQALYVA 247
            + ++   +G    +T+S G+A                          ++  AD+ALY A
Sbjct: 242 HSLKMPHETGDFGRVTVSVGVASLEAGTLPVTRPGTAVTPVPDSIAVALLAEADRALYRA 301

Query: 248 KKSGRNRVVC 257
           K  GRN    
Sbjct: 302 KHEGRNCSRF 311


>gi|228955663|ref|ZP_04117661.1| GGDEF domain protein [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|229193667|ref|ZP_04320610.1| GGDEF domain protein [Bacillus cereus ATCC 10876]
 gi|228589820|gb|EEK47696.1| GGDEF domain protein [Bacillus cereus ATCC 10876]
 gi|228804032|gb|EEM50653.1| GGDEF domain protein [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 352

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 16/226 (7%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96
           +++ T I    I   YI L          +  + L +IS  I+  + +IS + + +    
Sbjct: 132 VWLHTYILSILIPALYIWLIK-------EIHIVGLYLISSIITGYITFISANYVLQSNEL 184

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
           + ++ Q + ID L+GL N   F   +  +       N+   ++  DID+FK +ND +GHP
Sbjct: 185 FQKMKQYATIDALTGLGNVRQFDLEMNRHISNKNMKNDSFCLLLIDIDHFKYVNDTYGHP 244

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+  +   L      P    R GGEEFA            +    +R  +E+    
Sbjct: 245 AGDEVLKQVGCILRETSQFPDLAFRKGGEEFALLIPNKGLAYGILTGEQIRTAVESHSFQ 304

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +     I IT+S G++E   +E     I  AD ALY +K++GRN+V
Sbjct: 305 LLDETKIKITVSVGVSEY--EESPEQFIQAADDALYYSKRNGRNKV 348


>gi|148556451|ref|YP_001264033.1| diguanylate cyclase [Sphingomonas wittichii RW1]
 gi|148501641|gb|ABQ69895.1| diguanylate cyclase [Sphingomonas wittichii RW1]
          Length = 408

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/276 (24%), Positives = 113/276 (40%), Gaps = 43/276 (15%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYIL---------VENLSLV 72
             PHT    F     I +A  +F   +    IG + + G+ ++           + +   
Sbjct: 115 LRPHTLTTQFIAVVIIVMAFYLFSPVLLWGMIGASLYLGIGFLAGAWYWGSLPWDTVRAY 174

Query: 73  IISITISLLLGYISGSILKELFISY-------------------------NRISQLSRID 107
            + + ++ ++GY+    L  L                              R+  ++  D
Sbjct: 175 GLLLIMANVVGYVVARRLARLQRQQFEALSEERLSKQRLMEEVARREALETRLRIMADTD 234

Query: 108 CLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+GL N   F+           S     S+   D+D FK IND +GH  GD V+  ++ 
Sbjct: 235 ELTGLANRRCFLERARTAFGTARSRERPFSLCMIDVDNFKAINDGWGHDCGDAVLREVAA 294

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
             +  F     VGR GGEEF AA  G+   +A  +A  LR+ I   ++       + +T+
Sbjct: 295 ACLRTFREGDAVGRFGGEEFVAALPGADMADARRIAERLRETIAGLRLEAPL-ADLRVTV 353

Query: 221 SAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
           + G+AE    +  ++  + RAD ALY  K+SGRN V
Sbjct: 354 TIGLAEVEPLETSLAPALKRADAALYQGKRSGRNMV 389


>gi|158314509|ref|YP_001507017.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EAN1pec]
 gi|158109914|gb|ABW12111.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EAN1pec]
          Length = 706

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G +L  +  S  ++   +  D L+GL N + F   L        +   ++V+ D+D FK
Sbjct: 265 NGRLLASVQTSRRQLHHQAFHDPLTGLANRALFDDRLRHALASCSSRPCALVYCDLDDFK 324

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           ++ND  GH VGD ++   + +L     +   V RLGG+EFA       +  E   +   L
Sbjct: 325 RVNDTLGHAVGDALLRITAARLRNGVRSGDTVARLGGDEFAILLEDRHNGPEPEAICRRL 384

Query: 200 RKIIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +I      + +G S  +  S G  +A          ++  AD A+Y AK+ G+  +V 
Sbjct: 385 AAMIRA--PALLAGRSYPVGASIGLVVANANSAPTADALLRDADIAMYAAKRQGKGGLVV 442

Query: 258 F 258
           +
Sbjct: 443 Y 443


>gi|313202388|ref|YP_004041046.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. MP688]
 gi|312441704|gb|ADQ85810.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. MP688]
          Length = 1150

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 89/221 (40%), Gaps = 26/221 (11%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           ++ +   YG +  L   ++L                S + E   +   I   +  D L+ 
Sbjct: 685 WLAINNIYGEDGKLFRRVALF---------------SDITEKKRADALIWNQANYDLLTQ 729

Query: 112 LLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           L N   F   L          + + +++F D+D FK++ND  GH  GD ++   S ++  
Sbjct: 730 LPNRRLFSDRLQQEIKKSQHDHSQFALLFIDLDRFKEVNDTLGHSHGDYLLIEASHRIQR 789

Query: 165 VFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                  VGRLGG+EF              ++A  +   +         G  ++++ S G
Sbjct: 790 HLKETDTVGRLGGDEFTVIIANLPDPSVMTLIAQRVLDALAA--PYDLEGEIVYLSASIG 847

Query: 224 IAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           I         S  ++  ADQA+Y AKK+GRNR   F+ +  
Sbjct: 848 ITVFPEDATTSAELLKNADQAMYEAKKNGRNRFSFFTPMMQ 888


>gi|300703753|ref|YP_003745355.1| diguanylate cyclase [Ralstonia solanacearum CFBP2957]
 gi|299071416|emb|CBJ42735.1| putative diguanylate cyclase (GGDEF domain) [Ralstonia solanacearum
           CFBP2957]
          Length = 527

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 10/180 (5%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYF 139
             + G+ L    ++  R+   +  D L+GL N       +  L   +   S V  D+D+F
Sbjct: 337 ALLRGTRLTSARLA--RLDHEALTDPLTGLYNRRGVANALRLLAGPHRPFSAVMLDVDHF 394

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND  GH VGD+V+  ++  +          GR+GGEEF      ++ + A   A  L
Sbjct: 395 KRINDRDGHDVGDQVLKHIAALIREQARHDDITGRIGGEEFILLLPDATPEGAFKTAERL 454

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           R+ +E             +T+S G+A      E +  ++  +D ALY AK+SGRNR V +
Sbjct: 455 RRAVEARPNPTGR----VVTVSLGVAHYPRASEEVDAVLKLSDLALYQAKRSGRNRTVLY 510


>gi|107029170|ref|YP_626265.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
 gi|116687041|ref|YP_840288.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
 gi|105898334|gb|ABF81292.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054]
 gi|116652756|gb|ABK13395.1| diguanylate cyclase [Burkholderia cenocepacia HI2424]
          Length = 502

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 92/185 (49%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFD 135
           ++    L++ F     ++ L+R D L+GL N  A  ++L    E+L        S++F D
Sbjct: 312 WLLAFALRDNFRKQTLLTDLTRTDPLTGLRNRRALDTALADEWERLQRGSGGSLSVLFID 371

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
            D+FKQ ND  GH  GD  + FL++ +            R GGEEF A    + E  AA 
Sbjct: 372 ADHFKQYNDQHGHAQGDTALRFLAECIRAHTRRRGDLAARYGGEEFVAVLPDTDENGAAQ 431

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGR 252
           +A  +R+ +E +++   +      T+S G A   R     +  + ++AD ALY AK+ GR
Sbjct: 432 VAEAIRREVEGNRLVGFAETVPPFTVSIGCATGRRARHASMLALSHQADMALYRAKREGR 491

Query: 253 NRVVC 257
           NRV C
Sbjct: 492 NRVCC 496


>gi|330958950|gb|EGH59210.1| CHASE domain-containing protein/sensory box histidine kinase
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 794

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 60/175 (34%), Positives = 87/175 (49%), Gaps = 10/175 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +L      +  LS  D L+G  N   F   +         +   LSI+  D+D+FK
Sbjct: 618 SDITDLKRVEQELRALSVTDVLTGAYNRRFFQDRMQAELKRIDRHGGDLSIIMLDVDHFK 677

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND FGH  GD+V+  +S+++     +     RLGGEEF     G+   +A  LA  LR
Sbjct: 678 RINDRFGHAAGDQVLRSISEKISQRLRSDDVFCRLGGEEFMVVCPGTRSAQAYQLALSLR 737

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + + N  I    G    +T S GIA R   E I  ++ RAD  +Y AK+ GR+RV
Sbjct: 738 EALRNQVI---EGVDHVVTASFGIASRRAGEGIDAMLLRADSGVYAAKQGGRDRV 789


>gi|319786618|ref|YP_004146093.1| diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1]
 gi|317465130|gb|ADV26862.1| diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1]
          Length = 478

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 7/161 (4%)

Query: 106 IDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+ LLN     + L            + +++  D+D+FK IND  GH  GD+ +  +
Sbjct: 304 RDALTRLLNRRFLPTILRREVALQASTGRQFAVLMLDLDHFKAINDGHGHEAGDRALQHV 363

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  LV       ++ R GGEEF A     S+ EA  +A+ LR+ I  + + +S G  + +
Sbjct: 364 AAILVENTRGSDYLFRYGGEEFVAVLGSVSQTEAVAIAHALRRAISGAPLALSDGTRLQL 423

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + S G+A +        ++ RAD A+Y AK++GR+RVV   
Sbjct: 424 SASIGVAVQDGHPDYERVLARADAAMYQAKRAGRDRVVVAD 464


>gi|262164495|ref|ZP_06032233.1| GGDEF family protein [Vibrio mimicus VM223]
 gi|262026875|gb|EEY45542.1| GGDEF family protein [Vibrio mimicus VM223]
          Length = 338

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 106/220 (48%), Gaps = 21/220 (9%)

Query: 58  FYGLEYILVENLSLVIISITISLLLG----------YISGSI------LKELFISYNRIS 101
           F  LE +  E+LS+  +   I  L+           +++  +      +  L     ++ 
Sbjct: 117 FRELERVEQEDLSIEEVMTVIRRLISDSKDIRHSTNFLNNQLNAATHEISRLKEQLAQVQ 176

Query: 102 QLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           + +  D LSGL N  AF     +L      + ++  DID+FK +ND +GH  GD++I  +
Sbjct: 177 KDALFDSLSGLYNRRAFDGDMFTLLHAAHPVCLIMLDIDHFKALNDTYGHLFGDQIIRAI 236

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217
           + +L  +    +   R GGEEFA      S + A   A  +R+ IE   + +  SG S+ 
Sbjct: 237 AKRLQSLCRDGVTAYRYGGEEFALITPNKSLRIARQFAESVRRSIEKLTVKDRRSGQSVG 296

Query: 218 -ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            IT S G+ E+   + + +++ RAD  LY AK  GRNRV+
Sbjct: 297 NITASFGVVEKIDGDSLESLVGRADGLLYEAKNLGRNRVM 336


>gi|254516333|ref|ZP_05128392.1| diguanylate cyclase (ggdef domain) [gamma proteobacterium NOR5-3]
 gi|219674756|gb|EED31123.1| diguanylate cyclase (ggdef domain) [gamma proteobacterium NOR5-3]
          Length = 515

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 67/219 (30%), Positives = 101/219 (46%), Gaps = 24/219 (10%)

Query: 59  YGLEYILVENLSLVIISIT------ISLLLGYISGSILK------ELFISYNRISQLSRI 106
           YGL ++ V  LSLV+I +       I+     +  S L+      EL      + +++  
Sbjct: 294 YGL-FLSVSFLSLVVIGLITFWNRIIAKANRQVERSNLRLKLLDEELKAKNQELEKIAGT 352

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N           I     Y+ +  +   DID FK++ND++GH +GD V+  ++
Sbjct: 353 DVLTGLCNRLKLDAALKNEIDRADRYSLEFGVALADIDNFKRVNDSYGHQIGDDVLVGIA 412

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           D L          GR GGEEF     G+S  +   L   LR  IE     I+       T
Sbjct: 413 DVLQNNLRKTDIAGRWGGEEFLIICPGTSANDMLKLIESLRVKIEQYDFPIAGKQ----T 468

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +S GI      +  ++I  RADQALY AK +G+N+V  +
Sbjct: 469 VSVGITSYFPLDSAASITKRADQALYEAKGAGKNKVTQY 507


>gi|218694243|ref|YP_002401910.1| conserved hypothetical protein; putative membrane protein (8
           predicted transmembrane domain) [Escherichia coli 55989]
 gi|309797949|ref|ZP_07692328.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
 gi|218350975|emb|CAU96679.1| conserved hypothetical protein; putative membrane protein (8
           predicted transmembrane domain) [Escherichia coli 55989]
 gi|308118437|gb|EFO55699.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
          Length = 443

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 75/265 (28%), Positives = 131/265 (49%), Gaps = 9/265 (3%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60
           +  SL   LS W  +    +  S    ++  S   SI   + I++  I +  + +     
Sbjct: 181 IQYSLNRHLSTW--NTVYTKIISVFWLVLLISSCISIRNYSKIWLCIILISIVSVCNNLI 238

Query: 61  LEYILVENLSLVIISITISLL-LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           L Y + ++     ++  + L+ + YI  +++  +F   N  + ++  D L+   N   FI
Sbjct: 239 LLYFIDQSHPAWYMTKFLELISMIYIISTLMYYVFRKLNHANHMAIHDPLTNTYNRRYFI 298

Query: 120 SSLG--SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
            SL   S +   S++  DID FK IND +GH +GD+VI  ++  +         +GRLGG
Sbjct: 299 DSLKNISKHHDFSVIMLDIDNFKSINDKWGHHMGDQVIVMVTRIIKKSIRKEDILGRLGG 358

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIEN--SQINISSGPSIHITISAGI-AERCHKEPIS 234
           EEF     G++++    +A  +RK IE   S+  +S GP   IT+S G    + +    S
Sbjct: 359 EEFGIIIKGNTQKLLLSIAERIRKNIEEQCSEKLLSHGPE-KITVSIGCFTSKENNLSPS 417

Query: 235 TIIYRADQALYVAKKSGRNRVVCFS 259
            ++  AD+ALY AK++G+N+V+  S
Sbjct: 418 EMLVNADKALYQAKRTGKNKVITHS 442


>gi|86750684|ref|YP_487180.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
 gi|86573712|gb|ABD08269.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
          Length = 261

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 119/242 (49%), Gaps = 12/242 (4%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS 88
           +  +   +  +  +  ++++      L P   +++  +  +  V +S  +S  L Y S  
Sbjct: 19  MALAGGLTALVTLLFLLSDLGADAKALVPVGEVQHASL--IVAVGVSTVLSGALSYRSAI 76

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           ++++L ++   ++++SR D L+GLLN   F  +            +++  +  DID FK 
Sbjct: 77  LMRQLTLTRAELARISRTDPLTGLLNRRGFDDAAAPLLAQAAAAGQRVVALMCDIDRFKT 136

Query: 142 INDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           IND +GH  GD+V+A +   L          + R GGEEFA   +G S++EA   A  L 
Sbjct: 137 INDRYGHDAGDRVLARIGTILSDFAEANGAVIARHGGEEFAGLMVGVSDEEATRYAQALC 196

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           K+         +  ++ +T+S G+A       ++ ++ RADQALY AK  GRN VV   +
Sbjct: 197 KLCSTD--VAGNDVAVPVTMSFGLATHLPGGDLAALMRRADQALYRAKDLGRNCVVQIDE 254

Query: 261 IE 262
           +E
Sbjct: 255 LE 256


>gi|73539725|ref|YP_294245.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia eutropha JMP134]
 gi|72117138|gb|AAZ59401.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia eutropha JMP134]
          Length = 835

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 11/187 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFK 140
           S + +  +   R++ L+  D L+ L N + F   L     +         ++F D+D FK
Sbjct: 390 SDITQRRMDEERLNHLAMHDALTSLPNRTLFSERLKQAIARAKRAARRVAVMFIDLDRFK 449

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND  GH VGD+ +  ++ +L         V RLGG+EF          +  A +A  L
Sbjct: 450 LINDTMGHGVGDEALKVIARRLKEAIRESDTVARLGGDEFTVIIEDVEDIRHVAQIAQAL 509

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
             ++   Q   + G ++ +T S GI+           ++ +AD+A+Y AK+ G+N    F
Sbjct: 510 LNVV--GQPIDAHGRTVFVTPSIGISIYPDDGIDRKQLLMQADRAMYEAKEEGKNNFRFF 567

Query: 259 SDIENNT 265
           +    ++
Sbjct: 568 ATQMTSS 574


>gi|332991692|gb|AEF01747.1| diguanylate cyclase/phosphodiesterase [Alteromonas sp. SN2]
          Length = 668

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 92/181 (50%), Gaps = 11/181 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L    +++ +L+  D L+GL N    + SL            +++++F D+D FKQ+ND+
Sbjct: 227 LERQQSQMEKLANFDTLTGLPNRQYLMKSLSIELARAKREKSQVALMFLDLDGFKQVNDS 286

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIE 204
           +GH  GDK++  +S ++         VGRLGG+EF    +G+ +  +   +A  L   I 
Sbjct: 287 YGHDAGDKLLCGISSEISDAMRDGDVVGRLGGDEFLIILVGNPTNSQLEAIAKRLISKI- 345

Query: 205 NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            ++++   G  +  ++S GIA     +   ST++  AD A+Y AK  G+ R V F+    
Sbjct: 346 -TKLDHIDGWRVDPSVSIGIALATDSDYAASTLVTNADVAMYKAKNEGKGRYVWFTASMQ 404

Query: 264 N 264
            
Sbjct: 405 E 405


>gi|307823056|ref|ZP_07653286.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307735831|gb|EFO06678.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 751

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 11/182 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYF 139
           G  +     +  ++   +  D L+GL N   F   LG    K       L+++F D+D F
Sbjct: 291 GRDVTRSKEAERQLLHQASYDILTGLPNRRLFGDRLGKDVAKAKRNDFGLAVLFIDLDRF 350

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILAND 198
           K++ND  GH VGD ++   + ++         V R  G+EF        E  A   +A +
Sbjct: 351 KEVNDTLGHAVGDLLLKKAAQRICSCVRESDTVARFAGDEFVVILPEVGESGALQRIAQN 410

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  ++  S        S +++ S GIA      +   T++  ADQA+Y AKK+GRN    
Sbjct: 411 IVGVMAQS--FTFGEHSAYVSASIGIAIFPQDGDNADTLVGCADQAMYSAKKTGRNNFCF 468

Query: 258 FS 259
           F+
Sbjct: 469 FN 470


>gi|326317860|ref|YP_004235532.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374696|gb|ADX46965.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 1083

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 12/181 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + +   +  RI  L+  D L+ L N S  +  L           E+L+++F D+D FK 
Sbjct: 622 DITDRKRNEERIRFLAHHDVLTELPNRSLCVQRLQAGLEQAARTGEQLAVLFIDLDRFKA 681

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILANDL 199
           IND  GH +GD ++  ++ +LV        V RLGG+EF      +  ++Q   ++   L
Sbjct: 682 INDTLGHHIGDGLLRSVAARLVQSVREGDTVSRLGGDEFVIVMRQVEGAQQVLRVVEERL 741

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +I  S         + ++ S GIA        +  ++ RAD A+Y AK +GR+    +
Sbjct: 742 IPLIRQSHP--VEAHELSVSCSVGIAVYPEDGADLDELMRRADAAMYEAKTAGRDMARLY 799

Query: 259 S 259
           S
Sbjct: 800 S 800


>gi|258625157|ref|ZP_05720073.1| GGDEF family protein [Vibrio mimicus VM603]
 gi|258582532|gb|EEW07365.1| GGDEF family protein [Vibrio mimicus VM603]
          Length = 338

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 106/220 (48%), Gaps = 21/220 (9%)

Query: 58  FYGLEYILVENLSLVIISITISLLLG----------YISGSI------LKELFISYNRIS 101
           F  LE +  E+LS+  +   I  L+           +++  +      +  L     ++ 
Sbjct: 117 FRELERVEQEDLSIEEVMTVIRRLISDSKDIRHSTNFLNNQLNAATHEISRLKEQLAQVQ 176

Query: 102 QLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           + +  D LSGL N  AF     +L      + ++  DID+FK +ND +GH  GD++I  +
Sbjct: 177 KDALFDSLSGLYNRRAFDGDMFTLIHAAHPVCLIMLDIDHFKALNDTYGHLFGDQIIRAI 236

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217
           + +L  +    +   R GGEEFA      S + A   A  +R+ IE   + +  SG S+ 
Sbjct: 237 AKRLQSLCRDGITAYRYGGEEFALITPNKSLRIARQFAESVRRSIEKLTVKDRRSGQSVG 296

Query: 218 -ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            IT S G+ E+   + + +++ RAD  LY AK  GRNRV+
Sbjct: 297 NITASFGVVEKIDGDSLESLVGRADGLLYEAKNLGRNRVM 336


>gi|254000430|ref|YP_003052493.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. SIP3-4]
 gi|253987109|gb|ACT51966.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. SIP3-4]
          Length = 1150

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 79/185 (42%), Gaps = 11/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S + E   +   I   +  D L+ L N   F   L          + + +++F D+D FK
Sbjct: 706 SDITEKKRADALIWNQANYDLLTQLPNRRLFSDRLQQEIKKSQHDHSQFALLFIDLDRFK 765

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           ++ND  GH  GD ++   S ++         VGRLGG+EF              ++A  +
Sbjct: 766 EVNDTLGHSHGDYLLIEASHRIQRHLKETDTVGRLGGDEFTVIIANLPDPSVMTLIAQRV 825

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCF 258
              +         G  ++++ S GI         S  ++  ADQA+Y AKK+GRNR   F
Sbjct: 826 LDALAA--PYDLEGEIVYLSASIGITVFPEDATTSAELLKNADQAMYEAKKNGRNRFSFF 883

Query: 259 SDIEN 263
           + +  
Sbjct: 884 TPMMQ 888


>gi|221065198|ref|ZP_03541303.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           KF-1]
 gi|220710221|gb|EED65589.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           KF-1]
          Length = 462

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 79/186 (42%), Gaps = 13/186 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           +   +  +      + + +  D L+GLLN  A  + L               ++  DID 
Sbjct: 249 ASKDISRMVKREMELRERANRDKLTGLLNRHAGEAELKRGQLQAQNQLRPYGVILGDIDL 308

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND FGH  GD+V+  ++  L           R GGEEF      +S   A  LA  
Sbjct: 309 FKQVNDRFGHVAGDRVLKMVAQVLSGKVRRYDHAVRWGGEEFLIILSDASLGVAVSLAER 368

Query: 199 LRKIIENSQINISSGPSIHI-TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +R  +E       S P +   TIS G+      E    ++ RAD ALY AK  GRN+V  
Sbjct: 369 IRCAVEAC-----SDPEVGCFTISLGVGLWEPGETEDDLLKRADAALYRAKHRGRNQVAI 423

Query: 258 FSDIEN 263
            +   N
Sbjct: 424 ATGSMN 429


>gi|24374900|ref|NP_718943.1| sensory box protein [Shewanella oneidensis MR-1]
 gi|24349604|gb|AAN56387.1|AE015775_4 sensory box protein [Shewanella oneidensis MR-1]
          Length = 879

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 100/207 (48%), Gaps = 11/207 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  +N+++  I   +  +  +++  + +     S  +++ L+  D L+ L N    +  L
Sbjct: 411 IFPQNITISAIYDEVGEIRYFVAVFADISAQKQSEAQLAHLAYFDPLTHLPNRMKLMIQL 470

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     N +L+ VF D+D FK IND+FGH +GD+++  L+ +L         + R+
Sbjct: 471 KQEIMHAKRLNSQLATVFIDVDLFKHINDSFGHSIGDEMLVELAKRLRSQLQEQDVLSRI 530

Query: 176 GGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           G +EF A   G    ++A    N LR++ E     +S+G  + +T + G++         
Sbjct: 531 GSDEFVALISGIQYHEDATAAINQLRQVFEQ-PFVVSTGDHLRLTATMGVSLYPSDGSNA 589

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSD 260
            T++  AD A+Y AK  GRN    +++
Sbjct: 590 DTLLRNADAAMYRAKSEGRNNYAFYTE 616


>gi|148243771|ref|YP_001220011.1| diguanylate cyclase/phosphodiesterase [Acidiphilium cryptum JF-5]
 gi|146400334|gb|ABQ28869.1| diguanylate cyclase/phosphodiesterase [Acidiphilium cryptum JF-5]
          Length = 620

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 11/189 (5%)

Query: 81  LLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132
           L GY +    + E   +  RI  L+  D L+GL N       L            K ++ 
Sbjct: 159 LAGYLVITQDISERRRATERIRYLAEHDPLTGLANRRRLHEQLEGELEAGRRQGTKFAVH 218

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQE 191
             D+D FK +ND FGH  GD+++  L+  L         + R+GG+EF    +G    ++
Sbjct: 219 VIDVDRFKTVNDLFGHAAGDRLLVDLATCLRQEARESDMIARIGGDEFVVLQVGIGDARD 278

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250
           A  LA  L   + ++++      ++  T+S GIA           ++  AD ALY  K +
Sbjct: 279 AGALAGRLVGAV-SARLAEPGARALAATVSIGIALAPDDGTTAEALLSHADMALYQVKST 337

Query: 251 GRNRVVCFS 259
           GRN    F+
Sbjct: 338 GRNGFAFFN 346


>gi|303326534|ref|ZP_07356977.1| putative diguanylate cyclase/response regulator [Desulfovibrio sp.
           3_1_syn3]
 gi|302864450|gb|EFL87381.1| putative diguanylate cyclase/response regulator [Desulfovibrio sp.
           3_1_syn3]
          Length = 536

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/255 (24%), Positives = 112/255 (43%), Gaps = 21/255 (8%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGL-----------TPFYGLEYILVENLSLVIIS 75
           F I  ++  ++ + TV  +    L  I L           +P   L  + +  L  ++  
Sbjct: 283 FYISIALLAAMVLGTVAVLHRHILSPISLAAQELRQIRFGSPAKALPPVRIRELQQLL-- 340

Query: 76  ITISLLLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--EKLSI 131
             +  L GY+     +   L    N+   LS +D L+G+ N  +F + L        + +
Sbjct: 341 DLVPSLRGYLKDLAARSGALEQEKNKYENLSLVDALTGVANRRSFDARLAQSACCASVGM 400

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQ 190
           +  D+D FK  ND+ GH  GDK +  ++  +    +     + R GGEEFA        Q
Sbjct: 401 LMIDVDLFKNYNDSLGHLAGDKCLVAVARAMQATLYRHDDTLFRYGGEEFAVILEDVVAQ 460

Query: 191 EAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKE--PISTIIYRADQALYVA 247
           +A  +A  +   I + ++       + ++T+S G+A     E    + ++ RAD+ALY A
Sbjct: 461 QALAVAERIMDRIRSLRLPHPDSAVAPYVTVSIGVAVARRGEGCSGAELVARADKALYRA 520

Query: 248 KKSGRNRVVCFSDIE 262
           K  GR+R+  + D +
Sbjct: 521 KAGGRDRICLYGDED 535


>gi|299134124|ref|ZP_07027317.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Afipia sp. 1NLS2]
 gi|298590871|gb|EFI51073.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Afipia sp. 1NLS2]
          Length = 958

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQI 142
            + E   + ++I+ ++R D L+ L N       +             +I+  D+D FKQ+
Sbjct: 507 DVTEQRQAESKITFMARHDALTRLPNRVLLAERIEQAIAQVGRGSGFAILCLDLDNFKQV 566

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRK 201
           ND  GH VGD+++  ++D+L         V RLGG+EFA     +   ++AA LA  + +
Sbjct: 567 NDTLGHAVGDELLCAVADRLGSCVREIDTVARLGGDEFAIIQADTQRPEDAARLARRIVE 626

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +   +     G  I I  S GI+           ++  AD ALY AK  GR     F  
Sbjct: 627 CL--GEPYEFDGQRIVIGCSVGISLSPGDGTSGEKLLKNADVALYRAKAEGRGIWRFFET 684

Query: 261 IENNT 265
             + +
Sbjct: 685 EMDES 689


>gi|170724153|ref|YP_001751841.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas putida
           W619]
 gi|169762156|gb|ACA75472.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida W619]
          Length = 328

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 9/178 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
              + +       + +L+  D L+   N   F    G            L+ +  DID F
Sbjct: 150 AEDITDKKQLEGELHRLATTDVLTQSSNRRHFFECAGQAFDSAREDGTPLAFLLLDIDDF 209

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQIND++GH  GD+V+  ++D    V       GR+GGEEFAA   G + Q A  +A  L
Sbjct: 210 KQINDSYGHQEGDQVLQRIADSGKAVLRRGDLFGRIGGEEFAAVFPGCNAQVAEQIAERL 269

Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++ I+    +        +T+S G+       + + ++  RAD A+Y AK+ G+N++V
Sbjct: 270 QREIQRLSFSHGE-QVYGVTVSQGLTGLTAEDDSLDSLFARADAAMYRAKRQGKNQIV 326


>gi|298530359|ref|ZP_07017761.1| diguanylate cyclase with PAS/PAC sensor [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509733|gb|EFI33637.1| diguanylate cyclase with PAS/PAC sensor [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 915

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 84/180 (46%), Gaps = 11/180 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
            + EL  +   + + +  D L+GL+N S F   +     +       LSI+  DID FKQ
Sbjct: 735 DISELEQARKILEKTAITDHLTGLMNRSRFDQLMEEEWRRAKRGGHCLSILMLDIDNFKQ 794

Query: 142 INDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND +GH  GD+ +  ++  L          + R GGEEF A    +  Q A ++A  +R
Sbjct: 795 FNDFYGHIQGDRCLQRIAGILSACLMRAGDVLARYGGEEFIALLPDTPLQSAVVVAEKMR 854

Query: 201 KIIENS-QINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +EN    N  S     +++SAG+A  C         +I++AD  LY AK  GRN V  
Sbjct: 855 MSVENLGMPNTGSQAGPFVSVSAGVASSCPFPGMSRQGLIHQADMMLYKAKSLGRNTVAW 914


>gi|126658584|ref|ZP_01729731.1| response regulator receiver domain protein (CheY-like) [Cyanothece
           sp. CCY0110]
 gi|126620171|gb|EAZ90893.1| response regulator receiver domain protein (CheY-like) [Cyanothece
           sp. CCY0110]
          Length = 335

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 25/195 (12%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +Y  + Q++  D L+G+ N  +              Y    SI+  DID FK IND
Sbjct: 137 ELIKAYKEMQQIAATDELTGIANRRSIFNIGKQEFERSQRYKSPFSILMIDIDKFKSIND 196

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM----------------FVGRLGGEEFAAAALGSS 188
            +GH VGD+ +  +    +                        +GRLGGEEF      ++
Sbjct: 197 TYGHDVGDEALKMMVKITLNCLRKVDHIGRLETEEEALAKKGHLGRLGGEEFVVILPHTN 256

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVA 247
            + A   A  + + +    + +    ++ IT+S GI     K+  I  I+ RAD AL+ A
Sbjct: 257 LKGAYKAAQRVCEAMPQETLQVED-KTVSITVSIGIGTYDPKDQKIDDILKRADLALFAA 315

Query: 248 KKSGRNRVVCFSDIE 262
           KK+GRNRV    + +
Sbjct: 316 KKNGRNRVAIMHEEQ 330


>gi|117923549|ref|YP_864166.1| cyclic nucleotide-binding protein [Magnetococcus sp. MC-1]
 gi|117607305|gb|ABK42760.1| cyclic nucleotide-binding protein [Magnetococcus sp. MC-1]
          Length = 592

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 87/179 (48%), Gaps = 11/179 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
             + E   +  RI+  +  D L+G+ N S F       I    +  ++L+I+F D+D FK
Sbjct: 404 RDITERKEAERRITYQANYDALTGIPNRSYFQQLLNQSIQRAAAEGKRLAIIFIDLDRFK 463

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
            +NDN GH  GD+++   S +          V RLGG+EF A        ++A  ++  +
Sbjct: 464 WVNDNLGHGAGDELLRLSSKRAASCLKGRDTVARLGGDEFVAILEHVGDTEQAFAVSKRV 523

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
            + +  ++  +  G  ++I+ S G+A           ++ RAD+A+Y +K++GRN    
Sbjct: 524 LESL--NRPFMLDGKEVYISGSMGVAIYPQDATQPEELLTRADEAMYCSKRAGRNACHF 580


>gi|332558859|ref|ZP_08413181.1| response regulator receiver modulated diguanylate cyclase
           [Rhodobacter sphaeroides WS8N]
 gi|332276571|gb|EGJ21886.1| response regulator receiver modulated diguanylate cyclase
           [Rhodobacter sphaeroides WS8N]
          Length = 461

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 13/169 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+ +D L+GL N     + L +        +E+ +++  D+D FK +ND +GH  GD V
Sbjct: 287 RLAVVDPLTGLYNRRYAGAHLAAVAERARAADERFAVMVIDLDRFKSVNDRWGHGAGDAV 346

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSG 213
           +  ++ +L         + R+GGEEF  A       ++A  +A  LR+ +E   + +  G
Sbjct: 347 LVAVARRLHANLRPGDLIARIGGEEFLVALPDVPRPEDAHAVAERLREAVEEEPVPLPGG 406

Query: 214 PSIHITISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNRVVC 257
            S+ +TIS G+A          EP+  ++ RAD AL +AK +GRN+V  
Sbjct: 407 GSLRVTISVGLALSPDGAGRRAEPVDAVVQRADSALLLAKSAGRNQVTI 455


>gi|313200984|ref|YP_004039642.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. MP688]
 gi|312440300|gb|ADQ84406.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. MP688]
          Length = 869

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 11/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S + +   +   I + +  D L+GL N       L          ++ L+++F D+D FK
Sbjct: 428 SDITKNKQNQEVIWRQANFDQLTGLPNRRMLHDRLNQEILKADRNHQMLAVLFLDLDRFK 487

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           ++ND +GH +GD+++   + +L+        V RLGG+EF     G   +     +A  +
Sbjct: 488 EVNDTYGHLMGDQLLQESAHRLLHSVRECDTVARLGGDEFVVILSGLQDKDVVQDIAQSI 547

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCF 258
            K   ++   + +  + H+++S GI            +   ADQA+YVAK +GRNR   F
Sbjct: 548 LKKF-DTPFQLDNDLT-HVSVSIGITIYPEDGNAGEVLFKNADQAMYVAKNNGRNRYSYF 605

Query: 259 SDIEN 263
           +    
Sbjct: 606 TASMQ 610


>gi|288920669|ref|ZP_06414972.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EUN1f]
 gi|288347939|gb|EFC82213.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EUN1f]
          Length = 1299

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 92   ELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDN 145
            E       ++  +  D L+GL N +AF   L              ++F D+D FK +ND 
Sbjct: 1124 ERRQMQAELAHRASHDPLTGLPNRAAFNRHLAAVAEHGQAGTSFGVLFIDLDNFKPVNDR 1183

Query: 146  FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            FGH +GD V+  +  ++         V RLGG+EFA       E +A ++     +I+E+
Sbjct: 1184 FGHAIGDDVLRVIGARIGAASRRTDMVSRLGGDEFAVLI---DEADADLVCAISARILES 1240

Query: 206  SQINIS-SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            S+  I+ +G +I +  + GIA  R   +   T +  AD+A+Y AK+ GR R   F+D
Sbjct: 1241 SRQPIALAGTTITLGATVGIALCRVGTDDPETALRNADKAMYRAKRGGRGRYALFAD 1297



 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 82/172 (47%), Gaps = 8/172 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNF 146
           E     +R+   +R D L+GL N S F+  L S          ++++ D+D FK IND+F
Sbjct: 434 ERKKLQDRLGHQARHDLLTGLANRSGFVDRLASALAVSTESSSAVLYLDLDGFKPINDSF 493

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+V+A +  +L  +       GRLGG+EFA     S    A+++A+ +   +   
Sbjct: 494 GHAAGDRVLAIIGARLAALLREGDLAGRLGGDEFAMLLRDSDLATASLVADRVISAVAEE 553

Query: 207 QINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
                 G  + +  S GIA           +I+ AD A+Y AK+ G  RV  
Sbjct: 554 I--TLEGECVQVGASVGIAMGRPGRSRADELIHAADTAMYAAKRDGGGRVAI 603


>gi|254000471|ref|YP_003052534.1| diguanylate cyclase [Methylovorus sp. SIP3-4]
 gi|313202431|ref|YP_004041089.1| diguanylate cyclase [Methylovorus sp. MP688]
 gi|253987150|gb|ACT52007.1| diguanylate cyclase [Methylovorus sp. SIP3-4]
 gi|312441747|gb|ADQ85853.1| diguanylate cyclase [Methylovorus sp. MP688]
          Length = 622

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 8/178 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDY 138
           +  ++ EL    + IS+++  D L+G LN                 +   LSI   DID+
Sbjct: 418 AEKLIDELTRRLDHISEVAHEDYLTGTLNRRGMDEAMEREFARADRHGTPLSIAMMDIDH 477

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+NDN GH  GD+ +  L   +         + R GGEEF      + + EA  +   
Sbjct: 478 FKQLNDNLGHATGDQALIHLVRIVKYSLRNTDVLARYGGEEFIIILPSTKQDEAMDIMKR 537

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +++ +      +     + IT SAG+AER   E   TI+ RAD ALY AK SGRN+V+
Sbjct: 538 VQRDL-TKNFFMHRNERVLITFSAGVAERLPGEGPETIVPRADAALYKAKHSGRNQVI 594


>gi|224373181|ref|YP_002607553.1| diguanylate cyclase [Nautilia profundicola AmH]
 gi|223589831|gb|ACM93567.1| diguanylate cyclase [Nautilia profundicola AmH]
          Length = 470

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 113/207 (54%), Gaps = 10/207 (4%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLS 110
           F + + P   +E +   N S   + I + L+  ++ G +L     +Y+++ + S+ID L+
Sbjct: 274 FMLSVIPLDKIETLNEINNSYNTLIIIVFLIYVFLLGVML--FLYNYSKMKRNSQIDYLT 331

Query: 111 GLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
            +LN S  +S + + ++  S++  D+D+FKQIND +GH VGD+++    D +        
Sbjct: 332 DILNRSGCLSKIKALDD-YSVLVLDVDHFKQINDTYGHNVGDEILKRFVDVVRNTIRKND 390

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
              R GGEEF      + ++ A ++A  +RK +EN+  +     ++ IT+S G+A++  +
Sbjct: 391 IFCRWGGEEFVIILPDTDKETAKLVAEKIRKTVENTDFD-----NLKITVSIGVAQK--E 443

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVC 257
           +  +     AD  LY AK+ GRNRVV 
Sbjct: 444 KNFNETFKIADMKLYEAKELGRNRVVA 470


>gi|222149526|ref|YP_002550483.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221736508|gb|ACM37471.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 909

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 82/178 (46%), Gaps = 10/178 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQIND 144
           +EL  +   +   S  D L+GL N       L          + ++++  D+D FK+IND
Sbjct: 464 QELENARQIMEHTSLHDPLTGLANRRFLDRHLAEIEDLRGNGKSVALLHIDLDRFKEIND 523

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKII 203
             GH  GD ++   + Q+        F  R+GG+EF       S Q AA +    L   I
Sbjct: 524 TLGHAAGDAMLRHAASQINAHMSPGDFAARIGGDEFVVVKHDESSQAAARILGETLIDAI 583

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +Q     G    ++ S GIA+ C+  P +   +  AD ALY AK+ G+NR+  FSD
Sbjct: 584 --NQPIHWEGQECRVSASIGIAQSCNNHPHLEQALINADIALYEAKRRGKNRLEFFSD 639


>gi|220934770|ref|YP_002513669.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996080|gb|ACL72682.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 305

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 9/171 (5%)

Query: 104 SRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +R D L+GL N                   + L+++  D+D+FK  ND +GH  GD+ + 
Sbjct: 116 ARQDPLTGLANRRMLDEAMEREWSRARRQGQPLAMLMCDVDHFKPYNDRYGHQAGDECLC 175

Query: 157 FLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
            L++     +      V R GGEEF      + E  A  +A  ++  + N  +     P 
Sbjct: 176 RLAELFQDLLHREGDLVARYGGEEFVVLLPNTDEIGALRVAQGIQDALRNLDLGHEDTPQ 235

Query: 216 IHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             +T+S G+A      +  ST++   D+ LY+AK+ GR+R+V  +D  NN+
Sbjct: 236 GRLTLSIGLAALVPDHDDRSTLLAEVDRRLYLAKQQGRDRIVHAADHNNNS 286


>gi|121593122|ref|YP_985018.1| diguanylate cyclase [Acidovorax sp. JS42]
 gi|120605202|gb|ABM40942.1| diguanylate cyclase [Acidovorax sp. JS42]
          Length = 388

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 107/237 (45%), Gaps = 18/237 (7%)

Query: 43  IFIANIFLFYIGLTP-FYGLEYILVENL--SLVIISITISLLLGYISGSILKELFISYNR 99
           ++    F   + ++P FY   +  ++    ++++I +   +++      + + L      
Sbjct: 137 LYAMAAFSVAVVVSPRFYATSFDTMDGAYAAMILIVLGGCMVVNLRVQQMRQRLDRQREA 196

Query: 100 ISQ-------LSRIDCLSGLLNHSAFISSLG-----SYNEKLSIV--FFDIDYFKQINDN 145
           +++       L+  D L+GL N  A +  +          + +++    D+D+FK++ND+
Sbjct: 197 LAEALAENRALAMRDELTGLYNRRAMVELIQLECRRRRRGQGTLLFAMIDVDHFKRVNDH 256

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH +GD V+   +D L         + R GG+EF         + A  L    R+ I  
Sbjct: 257 HGHAMGDHVLRVFADALRANVRETDVLARWGGDEFLLLLSDIEPRSAQTLLERTREAIAA 316

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             +  ++ P + +++SAG+A           + RADQALY AK  GRNRV    +++
Sbjct: 317 LPVP-NAPPDLRLSMSAGLALHMPHSSPQETLERADQALYAAKDQGRNRVALAPELQ 372


>gi|313202137|ref|YP_004040795.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. MP688]
 gi|312441453|gb|ADQ85559.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. MP688]
          Length = 923

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 94/212 (44%), Gaps = 17/212 (8%)

Query: 69  LSLVIISITISLLLGYISG-----SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           L + II   +  L G I+        +    ++ +RI  L+  D L+ L N   FI  L 
Sbjct: 449 LWIRIIGQAVYDLHGNITRIEGAIQDISAQKVAESRIQHLAFYDSLTSLPNRQLFIDRLE 508

Query: 124 -------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                    ++  +++F D+D FK +ND  GH +GD ++  ++ ++         V R G
Sbjct: 509 HTLAYSARTSKSGAVLFIDLDNFKTLNDTMGHDLGDMLLQQVAMRIAGCLRESDTVARFG 568

Query: 177 GEEFAAAA--LGSSEQEAAILANDLRK--IIENSQINISSGPSIHITISAGIAERCHK-E 231
           G+EF      L  + QEAA  A  + +  +I  +     SG   H + S G+     +  
Sbjct: 569 GDEFVVLLHELSGNHQEAAAQARLVSEKILISFAHPFQFSGYEHHTSASIGVTLFDQQPT 628

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            +  I+ RAD A+Y +K +GRN +  F     
Sbjct: 629 TVDEILKRADLAMYQSKAAGRNVIRFFDPEMQ 660


>gi|288549810|ref|ZP_05968278.2| cellulose synthesis regulatory protein [Enterobacter cancerogenus
           ATCC 35316]
 gi|288317511|gb|EFC56449.1| cellulose synthesis regulatory protein [Enterobacter cancerogenus
           ATCC 35316]
          Length = 535

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           L+L+    +  LL+ ++    ++  ++   + +   +  D L+ L N  A          
Sbjct: 331 LALLWALFSAMLLISWLLIRRMVSNMYTLQHSLQWQAWHDPLTRLHNRGALFERANRLAR 390

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                +   S++  D+D+FK IND FGH  GDKV++  +  +          GR+GGEEF
Sbjct: 391 ECQAQSRPFSVIQIDLDHFKNINDRFGHQAGDKVLSHAAGLIAGGLRPCDVAGRVGGEEF 450

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G +  +AA +A  +R  I++ +I +    ++ I+ S G+  A          +  
Sbjct: 451 CVVLPGLALPQAAAIAERIRSRIDSKEILLKKSTTLRISASFGVSCAHEKGNYNFDQLQS 510

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD  LY AK+ GRN+VV 
Sbjct: 511 IADLRLYQAKQRGRNQVVW 529


>gi|221635980|ref|YP_002523856.1| ggdef domain protein [Thermomicrobium roseum DSM 5159]
 gi|221157964|gb|ACM07082.1| ggdef domain protein [Thermomicrobium roseum DSM 5159]
          Length = 756

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 7/182 (3%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-----EKLSIVFFDIDYF 139
           +   +L        ++ + +  D L+G  N  A +  L         E ++++  D D F
Sbjct: 573 VHLELLMRQVELTEQLERKALTDPLTGQPNRRALLDHLRRALGDRRVEHVAVILIDFDGF 632

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND  GH  GD ++  ++++L         + R GG+EFA    G     A  +A  L
Sbjct: 633 KVLNDTKGHLFGDALLQAVAERLARSLRPSDLLARYGGDEFAVVLAGVDLAVAHDIAERL 692

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           R+ + ++   +     + +TIS G+A    H +   T++  AD+ALY AK+ G N +   
Sbjct: 693 RRAVADTSFQVRD-EVVSLTISLGVAASPRHGDTPETLLRAADEALYAAKRRGGNSIAIA 751

Query: 259 SD 260
            +
Sbjct: 752 GE 753


>gi|148546066|ref|YP_001266168.1| diguanylate cyclase [Pseudomonas putida F1]
 gi|148510124|gb|ABQ76984.1| diguanylate cyclase [Pseudomonas putida F1]
          Length = 496

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 10/170 (5%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
             +   ++ L+  D L+GL N            +      + L+I+  D+D+FK  N   
Sbjct: 324 HEAEENLAMLASTDSLTGLANRRRLDHVLRQEWARAQRSRKPLAILMVDVDHFKAFNQRH 383

Query: 147 GHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           GH  GD  +  ++  +      P     R GGEEF      +    A +LA  +R  +E 
Sbjct: 384 GHAGGDHALREVAKAIEACIRRPADLAARYGGEEFQVVLPETDLAGAQLLAERIRASVEA 443

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                    +  +T+S GI     +  +  ++  AD+ALY AK +GRNRV
Sbjct: 444 LAPFADDAHA--VTVSIGIGLSGTQHDLGRVLGAADEALYRAKANGRNRV 491


>gi|187733517|ref|YP_001879735.1| diguanylate cyclase (GGDEF) domain-containing protein [Shigella
           boydii CDC 3083-94]
 gi|187430509|gb|ACD09783.1| diguanylate cyclase (GGDEF) domain protein [Shigella boydii CDC
           3083-94]
          Length = 558

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/199 (27%), Positives = 95/199 (47%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND F H  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFSHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 536 LADRRLYLAKQAGRNRVCA 554


>gi|330812186|ref|YP_004356648.1| GGDEF domain membrane protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380294|gb|AEA71644.1| putative GGDEF domain membrane protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 429

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 70/284 (24%), Positives = 120/284 (42%), Gaps = 36/284 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIF------LFYIG 54
           + +S    L +WL  E    +     +M    + + +F A  + +A  +      L    
Sbjct: 141 LEQSFPQALLLWLS-EIRWPALHGA-WMSLIQLSYPMFAAAFLLLAWQYWRNPRPLHAAQ 198

Query: 55  LTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           L    GL ++L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL 
Sbjct: 199 LVGVLGLFWMLPKTFILPFTLNIMCSQVMLMIAAAVAHEAY-------QMAFRDELTGLP 251

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A    +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  + G      
Sbjct: 252 GRRALNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKIGGGGRAYR 311

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-------------------GP 214
             G EEFA    G +  E       +R+ IE   I + +                     
Sbjct: 312 YGG-EEFALVFAGKTIDECMPHLEVIRQSIETYAIQLRNPDSRPQDDQQGRQRRSGAGAS 370

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S+ +T+S G+AER  +     ++  ADQALY AK +GRN V+ F
Sbjct: 371 SVSVTVSIGVAERLEQRTPEEVLKSADQALYNAKGAGRNCVIAF 414


>gi|260598464|ref|YP_003211035.1| putative diguanylate cyclase YedQ [Cronobacter turicensis z3032]
 gi|260217641|emb|CBA31947.1| Cellulose synthesis regulatory protein [Cronobacter turicensis
           z3032]
          Length = 524

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 55/198 (27%), Positives = 92/198 (46%), Gaps = 10/198 (5%)

Query: 69  LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---- 123
           L L+ +  T  L + + +   +++ +      +   +  D L+ L N  AF         
Sbjct: 324 LGLLWLLFTAMLFISWRVIVGMVRNMLTMQRSLKWRAWYDTLTRLYNRGAFFERARLAAK 383

Query: 124 ---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              +     S++  D+D+FK IND +GH  GDKV+ + +  L          GR+GGEEF
Sbjct: 384 TCDAQQAPFSVIQLDLDHFKSINDRYGHQAGDKVLTWAAGMLSRSLRAEDIAGRVGGEEF 443

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238
                G+  + A  +A  +R+ I + +I +    +I I++S GI  A R        +  
Sbjct: 444 CIILPGTPSEGARQVAERIRQRINSQEILVRPDTTIRISVSVGISEALRDGDYDFEHLQS 503

Query: 239 RADQALYVAKKSGRNRVV 256
            AD+ LY+AK+ GRN V 
Sbjct: 504 IADRRLYLAKQRGRNLVC 521


>gi|296104979|ref|YP_003615125.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059438|gb|ADF64176.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 693

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 110/249 (44%), Gaps = 13/249 (5%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI 85
           T  I  +      +    F  +    + G+   +    + V  L+++ I++ +S+L   +
Sbjct: 180 TMGIAIAGMHYAGMKAAQFPVSTMAHHEGINGSWLAVLVSVVALAILGITLLVSMLDARL 239

Query: 86  SGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFD 135
                 +   L  +   ++QL+  D L+ L N       L              +++F D
Sbjct: 240 QARTSLLASSLAEANRELAQLALQDTLTRLPNRILLEDRLDQAINKADREGTHFALMFMD 299

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D FK +ND +GH VGDK++  ++ +L++       + R+GG+EF   A      +AA L
Sbjct: 300 LDGFKTVNDAYGHDVGDKLLVAVTQRLLLPLKGQYTLARIGGDEFVLLAEVGGPDDAASL 359

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNR 254
           AN L + I +S  N+     + +T+S GIA   H       +++ AD A+Y  K  GRN 
Sbjct: 360 ANALVRTI-DSPFNV-DPYKLVVTLSIGIALYPHDGKTDRELMFNADAAMYHTKHMGRNG 417

Query: 255 VVCFSDIEN 263
              F    N
Sbjct: 418 YHFFQPSMN 426


>gi|269104164|ref|ZP_06156860.1| hypothetical protein VDA_000319 [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268160804|gb|EEZ39301.1| hypothetical protein VDA_000319 [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 734

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 12/179 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E   + N++ +L+  D L+GL N + F            GS    LS++F D+D+FK
Sbjct: 292 DITETKATRNQVEKLAYYDSLTGLPNRALFLKRLKKLLNDDAGSSQLPLSLMFIDLDHFK 351

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND  GH  GD ++  +   +  +  +   + RLGG+EF   A  +  ++A  +A  L 
Sbjct: 352 EINDTQGHDHGDCLLQTIGQTIRSILESHHTLARLGGDEFVVIAPDTDAEQAQTIAYKLH 411

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + I  SQ     G +I +  S GI         +ST++ +AD A+Y AK  G N    +
Sbjct: 412 QTI--SQPIPLKGQNISVGASIGITVCEKQGPSVSTLLKQADIAMYRAKAQG-NGFCLY 467


>gi|237746617|ref|ZP_04577097.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacter formigenes HOxBLS]
 gi|229377968|gb|EEO28059.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacter formigenes HOxBLS]
          Length = 905

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 98/213 (46%), Gaps = 14/213 (6%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           E I   +L++ I+      ++ YI   + + +     +    +   D L+GL N    + 
Sbjct: 438 EKIEPTHLTVKIVRDMDDRIISYIGTLLDISQNEFLEDHTRYMIEHDFLTGLPNRILLLD 497

Query: 121 SLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            LG           + +++F D+D FK IND  GH +GD+++  ++ +L         V 
Sbjct: 498 RLGQTLIAAERNRRRAAVMFLDLDRFKHINDTLGHAMGDRLLQQVAFRLTKCVRKNDTVS 557

Query: 174 RLGGEEFAAAALGS-SEQEAAILANDLRKII-ENSQINISSGPSIHITISAGIAERC-HK 230
           R GG+EF        +  + A++AN++   + +N QI       + IT S GIA      
Sbjct: 558 RQGGDEFVILLNDIGNADDVALVANNIMHALSQNYQI---ENYEMSITPSIGIALYPEDG 614

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + I T++  AD A+Y AK+ GRN    F+   N
Sbjct: 615 KDIDTLLKNADTAMYHAKEGGRNAYQFFNAQMN 647


>gi|95931451|ref|ZP_01314156.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95132497|gb|EAT14191.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 661

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 11/177 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
            +L  +   +S+L+R+D L+G+ N   F  +L           E+L I+  DID+FK  N
Sbjct: 482 TQLEEANQHLSELARVDALTGIANRREFDQTLSSLWKSSYRKKERLGILMIDIDHFKFYN 541

Query: 144 DNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD  +  +   +         F+ R GGEEF      ++  +A  +A  +++ 
Sbjct: 542 DQYGHQKGDNCLQQVVQAICQSCLRPEDFIARYGGEEFIVLLPQTAHDDAVHVAKRIQQK 601

Query: 203 IENSQINISSGPSIH-ITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256
           I    I     P+   IT+S G+      +       I  AD+ LYVAK +GRN++ 
Sbjct: 602 IAEKAIAHQKSPTKPVITLSIGVCSMIPHDLSSEQQFIDCADRRLYVAKNNGRNQIC 658


>gi|89902010|ref|YP_524481.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
 gi|89346747|gb|ABD70950.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
          Length = 572

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 88/178 (49%), Gaps = 11/178 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           +++L  S   +  L++ D L+GL N + F   L            +++++F D+D FK I
Sbjct: 395 MRDLKESRQALEHLAQHDSLTGLPNRALFDDRLRQAVSQARRDKTRMALLFVDLDAFKDI 454

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRK 201
           ND  GH VGD ++   + ++         VGR+GG+EF        E Q+A ++A  + K
Sbjct: 455 NDTCGHHVGDLLLNAAAKRMQACVRHADTVGRMGGDEFVVLLTHVEEDQDAVLVAEKICK 514

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +  SQ     G S+ I  S G+A    H     T+   AD A+Y+AK+SG N V  F
Sbjct: 515 AL--SQPFDLDGRSLLIGSSIGVALYPEHGSDELTLSRSADAAMYLAKESGGNCVSLF 570


>gi|83746369|ref|ZP_00943421.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551]
 gi|207721977|ref|YP_002252415.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           MolK2]
 gi|207744678|ref|YP_002261070.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           IPO1609]
 gi|83726910|gb|EAP74036.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551]
 gi|206587150|emb|CAQ17734.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           MolK2]
 gi|206596085|emb|CAQ63012.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           IPO1609]
          Length = 457

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 12/208 (5%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           + + + +    S++   + + LL+  ++ ++ + LF +   + Q S  D L+G+ N S F
Sbjct: 241 FTVGWYVARIFSMLAPGVLVCLLVWEVT-TLYRRLFEANVSLQQASTHDALTGIYNRSYF 299

Query: 119 ISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-M 170
                          +  S++  D+D+FK+ ND FGH  GD  +  ++  L  V      
Sbjct: 300 NEQFPRAFDEARRKAQPFSLLMIDVDHFKRYNDTFGHLKGDGCLVTIAAALEGVLRRRAG 359

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RC 228
           F+ R GGEEFA     ++ ++A +LA   R+ + + +I   + PS ++TISAG A     
Sbjct: 360 FIARYGGEEFAVVLPDATPRDALLLAESAREAVLHLRIEAPT-PSRYVTISAGCATAMPE 418

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256
               +  +I  AD  LY AK +GRN VV
Sbjct: 419 ASTSLEALIEAADATLYRAKAAGRNLVV 446


>gi|307821996|ref|ZP_07652228.1| periplasmic/7TM domain sensor diguanylate cyclase [Methylobacter
           tundripaludum SV96]
 gi|307736562|gb|EFO07407.1| periplasmic/7TM domain sensor diguanylate cyclase [Methylobacter
           tundripaludum SV96]
          Length = 680

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 10/187 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVF 133
           LL         EL +   ++  LS  D L+G+ N   F        S      + L++  
Sbjct: 472 LLEIRVAERTDELQLLNRKLEALSTTDELTGIANRRRFDAKLLSEWSRAARLGQPLALAV 531

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            D+D+FK+ ND++GH  GD+ +  +++ L   +  T   V R GGEEF   A  +    A
Sbjct: 532 LDVDWFKKYNDHYGHQKGDECLRIIAEVLSANICRTGDLVARYGGEEFVFIAPTTDGAIA 591

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKS 250
             +A  + + +++  +         +T S G+A    ++      +I  AD+ALY AKK 
Sbjct: 592 LNMAWKICEALQSLALPHEMSGFGWVTASIGVAAIVPEQKLSPDMLIKAADEALYRAKKQ 651

Query: 251 GRNRVVC 257
           GRN+ V 
Sbjct: 652 GRNQAVL 658


>gi|296271637|ref|YP_003654268.1| 7TM domain sensor diguanylate cyclase [Arcobacter nitrofigilis DSM
           7299]
 gi|296095812|gb|ADG91762.1| 7TM domain sensor diguanylate cyclase [Arcobacter nitrofigilis DSM
           7299]
          Length = 580

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 81/260 (31%), Positives = 119/260 (45%), Gaps = 39/260 (15%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIIS----ITISLLLGYIS 86
            +IF+   +A V F++   LF   L+ +  LEY       +++ S    I  SL L Y  
Sbjct: 321 IAIFY--LLAQVGFLSMSTLF--SLSSYGFLEYNFYSRHGIMVGSFIEMILFSLALAYRI 376

Query: 87  GSILKE----------------------LFISYNRISQLSRIDCLSGLLNHS-------A 117
             + KE                      L  S  ++  L+  D LS LLN          
Sbjct: 377 KILEKEKFIIMQKAKDNLEINVKKRTKELEESKKKLEILANKDFLSDLLNRRPLFEISNR 436

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
            IS     N  +S++ FDID FK IND +GH  GD+VI   S  L         V R+GG
Sbjct: 437 LISLAKRENTTISVLLFDIDKFKAINDTYGHKEGDEVIKAFSKILKKDRRNSDIVARIGG 496

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTI 236
           EEF      ++ ++A I+A ++RK +E  Q+      +I  T+S G++  R     +  +
Sbjct: 497 EEFVILLPSTTHKDAFIIAEEIRKEVETFQVKTKDS-TICFTVSCGVSSLRKEDNNMDEL 555

Query: 237 IYRADQALYVAKKSGRNRVV 256
           I RAD+ LY+AK +GRN VV
Sbjct: 556 IARADKRLYMAKNNGRNVVV 575


>gi|134293662|ref|YP_001117398.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia vietnamiensis
           G4]
 gi|134136819|gb|ABO57933.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia vietnamiensis
           G4]
          Length = 517

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 9/185 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFF 134
             I    +     +   I  L+R D L+GL N     ++L     +        L++++ 
Sbjct: 321 AVIIVEDVTARRQTEQHIRHLARHDALTGLPNRHELHAALKRMLSQRPRLPSPALAVMYL 380

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND  GH  GD+V+  ++++L           R+GG+EF  A   ++  E+++
Sbjct: 381 DLDGFKSINDRCGHQAGDEVLMQVAERLARALPPGALAARVGGDEFIVALDDTTMHESSL 440

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           LA  +   I ++   +S G ++ + IS GIA          +I +AD ALY AK +G+  
Sbjct: 441 LATRIIGQI-SAPYTLSIGVTVSLGISIGIALDDGHGNPDELIRQADSALYDAKSAGKGI 499

Query: 255 VVCFS 259
              +S
Sbjct: 500 YRFYS 504


>gi|134096058|ref|YP_001101133.1| hypothetical protein HEAR2898 [Herminiimonas arsenicoxydans]
          Length = 314

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 14/179 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           E  I+  R+  +   D L+G+ N       L         +   LS ++ D+D+FK++ND
Sbjct: 133 ENVINNERLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGHTLSAMYIDLDFFKKVND 192

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH  GD+V+  ++ ++         +GR GGEEF    + +  + A  +A  +R  I 
Sbjct: 193 NYGHQGGDEVLREVAARIKAELRLSDALGRFGGEEFVVLLIDAGMEAALAVAERMRSSIA 252

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIST-------IIYRADQALYVAKKSGRNRVV 256
           N  + +SSG  + +++S G++     E           ++ +ADQALY+AK+ GRN+V+
Sbjct: 253 NRPLVLSSGEQLRLSVSIGVSTLQAIERKDEVATIAQQLLAKADQALYLAKQGGRNKVM 311


>gi|116695986|ref|YP_841562.1| response regulator [Ralstonia eutropha H16]
 gi|113530485|emb|CAJ96832.1| response regulator containing a GGDEF effector domain [Ralstonia
           eutropha H16]
          Length = 339

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+GL N   F   LG           +++++  D+D FK  N
Sbjct: 159 QQLLETNLELQRLTNSDGLTGLSNRRYFDEYLGAEWRRALREQTQVALLMIDVDAFKAYN 218

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+V+  ++  +            R GGEEFA     +S     +LA  +R+ 
Sbjct: 219 DTYGHVAGDEVLRRVAAVIRDNCVRPTDLPARFGGEEFAMVLPATSPGGVRLLAEKVRRA 278

Query: 203 IENSQINISSGPSIH-ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++   I     P+   +T+S G A       +  + ++  AD  LY AK++GRN+V+ 
Sbjct: 279 VQGLAIAHGGSPTADCVTVSIGGAVLVPQPDQAPNQVVEAADAGLYQAKRNGRNQVMM 336


>gi|127512610|ref|YP_001093807.1| diguanylate cyclase with PAS/PAC sensor [Shewanella loihica PV-4]
 gi|126637905|gb|ABO23548.1| diguanylate cyclase with PAS/PAC sensor [Shewanella loihica PV-4]
          Length = 496

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 10/176 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           ++K+L     +    +  D L+ + N  A    L             L++  FDID+FK 
Sbjct: 323 VIKDLSDEM-QYKSQANTDPLTKVANRRAINRQLAAAISRSNRQQTPLAVCIFDIDHFKA 381

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH VGD V+  ++           FVGR GGEEF      + ++ A   A+ LR+
Sbjct: 382 VNDKHGHLVGDDVLQRVAKIFSDAIRKTDFVGRWGGEEFVIILEDTDKEGAKHFADKLRQ 441

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            ++     I     + IT+SAG++  C  +    +   ADQALY AK+SGR+ VV 
Sbjct: 442 EVKRRSQGIDF--PVAITLSAGVSVYCQDDKQDCLFNHADQALYRAKESGRDCVVV 495


>gi|332982474|ref|YP_004463915.1| GAF sensor-containing diguanylate cyclase [Mahella australiensis
           50-1 BON]
 gi|332700152|gb|AEE97093.1| diguanylate cyclase with GAF sensor [Mahella australiensis 50-1
           BON]
          Length = 516

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 82/173 (47%), Gaps = 8/173 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFFDIDYFKQINDN 145
           E    Y R+ +++ +D L+ + N   F  +             L+I   DID FK+IND 
Sbjct: 332 ENSRLYERMHKMAILDGLTQVHNRMYFQEAFEEELHKAKGKYPLTIAIGDIDDFKKINDI 391

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GDKV+  ++  L         + R GGEEF     G    +A  +   LR+ IE 
Sbjct: 392 YGHIAGDKVLKAVTSILKDHLRQGDIIARYGGEEFVIILPGVDMNQAYNIVERLRRRIEM 451

Query: 206 SQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
             ++   G  I +TIS GIA           ++ +AD+ALY AK+ G+N+V  
Sbjct: 452 LTVS-EEGHDISVTISFGIASYPECGWTTRELLRQADKALYQAKEHGKNQVCL 503


>gi|323497117|ref|ZP_08102137.1| putative GGDEF protein [Vibrio sinaloensis DSM 21326]
 gi|323317692|gb|EGA70683.1| putative GGDEF protein [Vibrio sinaloensis DSM 21326]
          Length = 321

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 76/202 (37%), Positives = 104/202 (51%), Gaps = 16/202 (7%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
           V ++SL+I  +T       I+ + +  L  S  ++S LSR D L+ L N   + S L   
Sbjct: 123 VSHVSLIINDVT------DIAKNKIH-LMDSNQKLSDLSRTDGLTKLFNRRYWESCLLKE 175

Query: 126 NEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
            E         S+V FDID+FK++ND +GH VGD VI   SD+L     T    GR GGE
Sbjct: 176 FETCKVSGSVSSLVIFDIDHFKKVNDTYGHTVGDHVIRHASDELRKASRTSDICGRYGGE 235

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTII 237
           EF     G+   +A      LRK IE S I    G +++ TIS GI E   H+    T +
Sbjct: 236 EFTVILPGTCANQALYFTERLRKKIEQSIIAC-EGYNVNYTISLGICEISAHQTNHLTWL 294

Query: 238 YRADQALYVAKKSGRNRVVCFS 259
             AD+ALY +K++GRNR   F 
Sbjct: 295 EHADKALYFSKETGRNRSTVFD 316


>gi|171058030|ref|YP_001790379.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Leptothrix cholodnii SP-6]
 gi|170775475|gb|ACB33614.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptothrix cholodnii SP-6]
          Length = 898

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E   S  RI QL+  D L+GL N +  +              ++L+++F D+D FK 
Sbjct: 454 DITEQKASAQRIHQLAYYDVLTGLPNRALLMDRCQHELARAMRDGKRLAVLFLDLDRFKH 513

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GHPVGD ++  ++ +L         + RLGG+EF              LA   R+
Sbjct: 514 INDSLGHPVGDGLLRAVAQRLQGTLRDSDTIARLGGDEFIVLLEHVETSAGVELAA--RR 571

Query: 202 IIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I++  +         + +  S GI+    H   I+++   AD ALY AK +GR     F 
Sbjct: 572 ILDAFRDPFQLEEHRLSVGASVGISLFPDHASDITSLFKYADLALYQAKAAGRGDFRFFE 631

Query: 260 DIENNTC 266
              N+  
Sbjct: 632 PRFNDAA 638


>gi|296534437|ref|ZP_06896877.1| GGDEF domain protein [Roseomonas cervicalis ATCC 49957]
 gi|296265236|gb|EFH11421.1| GGDEF domain protein [Roseomonas cervicalis ATCC 49957]
          Length = 509

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 67/266 (25%), Positives = 114/266 (42%), Gaps = 28/266 (10%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG-------LEYILVENLSLVII 74
           F     + + ++  S+  A  +      +   G    YG          +    + +V+ 
Sbjct: 236 FLLAVPLSWIALRISLRAAYTLLTLLCVIASAGTVAGYGPFQSGGVANPMQSVGMLIVLC 295

Query: 75  SITISLLLGYISGSILKE-------------LFISYNRISQLSRIDCLSGLLNHSAFISS 121
           ++ I  LL  +S     E             +      + + +  D L+GL N  +F++ 
Sbjct: 296 AMNILTLLALVSERREAEAALADSNRLLEWRIAERTEALRRQAETDALTGLANRGSFLAR 355

Query: 122 LGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
             +            +++  D+D+FK +ND+ GH  GD V+   +++   V       GR
Sbjct: 356 AAASLQEHAAAARPFTLLAIDLDHFKAVNDSAGHAAGDTVLRLAAERCAAVLRQGDLFGR 415

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PI 233
           LGGEEFA A   +   EA ILA  LR+ +    +   + P   +T S GIAE    E  +
Sbjct: 416 LGGEEFAVALPCAGAAEALILAERLRQALATIDLPRGAAPEGRLTASFGIAEARPGESDL 475

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
           + ++ RAD ALY AK +GR+RV   +
Sbjct: 476 APLLRRADLALYSAKHAGRDRVTLAT 501


>gi|222099839|ref|YP_002534407.1| Diguanylate cyclase and serine/threonine protein kinase with TPR
            repeats [Thermotoga neapolitana DSM 4359]
 gi|221572229|gb|ACM23041.1| Diguanylate cyclase and serine/threonine protein kinase with TPR
            repeats [Thermotoga neapolitana DSM 4359]
          Length = 1178

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 67/191 (35%), Positives = 97/191 (50%), Gaps = 17/191 (8%)

Query: 82   LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
             G+   ++L+E       I      D L+G+L+   F+  L         Y   LS++  
Sbjct: 997  FGHTLTAVLRERLYRDRSIK-----DSLTGVLSRWYFMERLEEEAYKSTRYRMPLSLIMC 1051

Query: 135  DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
            DID FK+IND FGH  GD  + ++  +L         VGR GGEEF  A  G+S +EA +
Sbjct: 1052 DIDDFKKINDQFGHMSGDSALRWIGKKLFSSLRKSDLVGRYGGEEFVVALPGTSLKEARL 1111

Query: 195  LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            +A  LR  I+    N+      HIT+S G+AE    E I   I RAD+ALY+AK  G++R
Sbjct: 1112 VAEKLRNSIKTDPENLH-----HITVSFGVAEYIPGESIFETIRRADEALYMAKSLGKDR 1166

Query: 255  VVCFSDIENNT 265
            VV   ++   +
Sbjct: 1167 VVTEQELSQRS 1177


>gi|17545229|ref|NP_518631.1| hypothetical protein RSc0510 [Ralstonia solanacearum GMI1000]
 gi|17427520|emb|CAD14038.1| probable signal transduction eal-ggdef domains transmembrane
           protein [Ralstonia solanacearum GMI1000]
          Length = 701

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 22/218 (10%)

Query: 66  VENLSLVIISITISLLLGYISGSIL------------KELFISYNRISQLSRIDCLSGLL 113
            E L+LVII +T+++L   +  S+L              L  +   ++ L+  D L+ L 
Sbjct: 213 AEWLALVIIVVTLAVLAMALLISVLDLRMEARTAVLATSLAKANRELAYLALHDSLTKLS 272

Query: 114 NHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N       L    +         +++F D+D FK IND +GH  GD ++A ++ ++V   
Sbjct: 273 NRLLLEDRLDQAIQAAGSNRGSFALMFLDLDGFKAINDVYGHHAGDLLLADVARRIVACV 332

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                V R+GG+EF   A      +A  LA+ L   +      +  G ++ ++ S GIA 
Sbjct: 333 RQQDTVARVGGDEFVVLAGVGEPADAGTLADALLAAVRA--PFLVDGHALRVSTSIGIAL 390

Query: 227 RCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                     ++  AD A+Y AK  GR+    F    N
Sbjct: 391 YPDDGAGQHDLLTNADAAMYHAKGMGRDTYCFFEASMN 428


>gi|268679033|ref|YP_003303464.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617064|gb|ACZ11429.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 768

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 14/184 (7%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVF 133
           L+GY +   ++       R+ +LS  D L+GL N                 ++   SI+ 
Sbjct: 583 LIGYTA---IRTDITDKKRVEELSITDRLTGLYNRLKLDELFAHHLSIARRHHTPFSIIL 639

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID FK +ND +GH VGD ++   +  +     +    GR GGEEF      S  + A+
Sbjct: 640 LDIDKFKSVNDTYGHQVGDTILQEFALCVKAQIRSEDIFGRWGGEEFLLLLPNSPLENAS 699

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +LA  LR  + +   +         T S G+A     +   +++ R D+ALY AK++GRN
Sbjct: 700 LLAEKLRLCVASFSFSQVGMK----TASFGVATFHEGDDEKSMMVRVDEALYRAKENGRN 755

Query: 254 RVVC 257
           +VV 
Sbjct: 756 QVVL 759


>gi|253998885|ref|YP_003050948.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. SIP3-4]
 gi|253985564|gb|ACT50421.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. SIP3-4]
          Length = 869

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 11/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S + +   +   I + +  D L+GL N       L          ++ L+++F D+D FK
Sbjct: 428 SDITKNKQNQEVIWRQANFDQLTGLPNRRMLHDRLNQEILKADRNHQMLAVLFLDLDRFK 487

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           ++ND +GH +GD+++   + +L+        V RLGG+EF     G   +     +A  +
Sbjct: 488 EVNDTYGHLMGDQLLQESAHRLLHSVRECDTVARLGGDEFVVILSGLQDKDVVQDIAQSI 547

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCF 258
            K   ++   + +  + H+++S GI            +   ADQA+YVAK +GRNR   F
Sbjct: 548 LKKF-DTPFQLDNDLT-HVSVSIGITIYPEDGNAGEVLFKNADQAMYVAKNNGRNRYSYF 605

Query: 259 SDIEN 263
           +    
Sbjct: 606 TASMQ 610


>gi|239904846|ref|YP_002951584.1| putative response regulator receiver protein [Desulfovibrio
           magneticus RS-1]
 gi|239794709|dbj|BAH73698.1| putative response regulator receiver protein [Desulfovibrio
           magneticus RS-1]
          Length = 801

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 90/182 (49%), Gaps = 12/182 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYF 139
           + + +     ++++ ++  D L+GL N S  +  +    E+         +++F D+D F
Sbjct: 358 TDITDRKQLESQLAHMAFHDPLTGLPNRSLCLDRIRQALERSKRRDNYQYAVIFLDLDRF 417

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K +ND+ GH VGD+++  ++ +L     +   V RLGG+EF      + S +E   +   
Sbjct: 418 KIVNDSLGHHVGDRLLESVARRLRDCVRSLDTVARLGGDEFVVVLEETGSYREVVRIIKR 477

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
           +R  +  S++   SG  +H++ S GI       E    ++  A+ AL+ AK  GRNR   
Sbjct: 478 IRDAM--SEVFPLSGHDVHVSASMGIVVSPAIYEKPEELLRNANIALHRAKDEGRNRFKV 535

Query: 258 FS 259
           F+
Sbjct: 536 FN 537


>gi|229590892|ref|YP_002873011.1| putative signaling-like protein [Pseudomonas fluorescens SBW25]
 gi|229362758|emb|CAY49668.1| putative signalling-related protein [Pseudomonas fluorescens SBW25]
          Length = 857

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 11/187 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           + + + E   +  RI  LS+ D L+GL N +         + +L S  + L ++  D+D 
Sbjct: 413 TATDVTEEVEARRRIEFLSQHDALTGLPNRTRLQAFLDGKLKALPSTEQPLVMLSLDLDR 472

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAN 197
           FK +ND  GH  GD+V+  +S +L         V R+GG+EF      + ++ E   L  
Sbjct: 473 FKPVNDLLGHAAGDRVLNEVSARLADCVRHGDLVARVGGDEFVLILTDAGTQDEVETLCK 532

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            L + IE + I I     + I+ S GIA   +     + ++  AD ALY AK +GRN   
Sbjct: 533 RLIESIERT-IRIDE-QEVFISASIGIAIAPNDAREAAELLRYADIALYEAKAAGRNTWR 590

Query: 257 CFSDIEN 263
            +S   N
Sbjct: 591 FYSGDMN 597


>gi|258405321|ref|YP_003198063.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
 gi|257797548|gb|ACV68485.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense
           DSM 5692]
          Length = 457

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 83/169 (49%), Gaps = 8/169 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
              +  ++++++  D L+ +     F+             +  L++   DID+FKQIND 
Sbjct: 280 RKEAEEQLARIATTDSLTNVSTRQHFMELANRALAQHLRNSRPLTVCMLDIDHFKQINDT 339

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD+ +A+ ++ +         +GR GGEEF      + + EA  +A+ +R  +  
Sbjct: 340 YGHGTGDRALAWFAETVSGELRATDIIGRFGGEEFCIVLPETDQDEAQQVAHRIRTAVTG 399

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
              + ++ P   IT+S GIA       +  +I  AD+ALY AK  GRNR
Sbjct: 400 GS-SAAASPIPPITVSIGIALADTPASMEAVIQLADRALYAAKAKGRNR 447


>gi|222081981|ref|YP_002541346.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
 gi|221726660|gb|ACM29749.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
          Length = 691

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 9/184 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFK 140
              + E      +++ L+  D L+GL N + F  S+            +++++ DID+FK
Sbjct: 245 SQDVTEERGVEAKLAHLAMHDSLTGLPNRAFFSESIVRQVASATPETPIALLYIDIDHFK 304

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND+ GH  GD ++  ++ +L+ +     FV RLGG+EFA     +    A   A+   
Sbjct: 305 HINDSKGHAAGDTLLRQVAQRLLRLAEKSDFVARLGGDEFALVLRMTDADRAQRFADL-- 362

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++  +      G   H+T S GIA    H +    ++  AD ALY AK SGR+    + 
Sbjct: 363 LLLSLAAPFDLDGVREHVTCSIGIAMAPDHADDADVLMRDADLALYAAKGSGRSTYRFYQ 422

Query: 260 DIEN 263
               
Sbjct: 423 TEMR 426


>gi|163749172|ref|ZP_02156422.1| sensory transduction system, regulatory protein [Shewanella
           benthica KT99]
 gi|161331242|gb|EDQ02131.1| sensory transduction system, regulatory protein [Shewanella
           benthica KT99]
          Length = 544

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 98/232 (42%), Gaps = 20/232 (8%)

Query: 44  FIANIFLFYIG----LTPFYGLEYILVENL---SLVIISITISLLLGYISGSILKELFIS 96
            +    L YI     L PF    + ++  L   +     I  S L+        +EL  +
Sbjct: 296 LVTTPMLGYIAERRSLLPFISCAFGILFTLLCGAYTFAVIRRSFLIKVEVEQRTQELNEA 355

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHP 149
              + +LS  D L+ + N   F         +       LS++  DID FKQ ND++GH 
Sbjct: 356 KLELEELSHTDELTQIANRRKFDEQFEKEWHRAVRSNTSLSLIMIDIDNFKQFNDHYGHL 415

Query: 150 VGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            GD+ +  ++  L          V R GGEEF      ++E E  +LA+  R IIE   I
Sbjct: 416 AGDQCLRDVAKSLQSAMSRNTDLVARYGGEEFVILLPNTNESE--LLADKCRMIIEKLHI 473

Query: 209 NI-SSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               S  S ++TIS G+  A             +AD+ LY+AK  G+NRV  
Sbjct: 474 PHEPSSVSEYVTISLGVISANPTQNSDPLAFSAKADKLLYLAKDLGKNRVCI 525


>gi|308186989|ref|YP_003931120.1| hypothetical protein Pvag_1481 [Pantoea vagans C9-1]
 gi|308057499|gb|ADO09671.1| Uncharacterized protein yciR [Pantoea vagans C9-1]
          Length = 661

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 92/189 (48%), Gaps = 16/189 (8%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      S  ++  +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRVLANTDTVTGLPNRNAIHQQISLALERSEGDETGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA----ILA 196
           ++ND +GH  GD+++  +S  ++   G    +GRLGG+EF   A  +S+         + 
Sbjct: 279 KVNDAYGHMFGDQLLQAVSLAILSCLGKDQTLGRLGGDEFVVLAEHTSQAALEAMSSRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             LR+      I + SG       S GIA    H +   ++I  AD A+Y AK++GR + 
Sbjct: 339 ERLRQPFRIGLIEVYSG------CSIGIAFAPLHGDDRESLIRNADTAMYHAKENGRGKF 392

Query: 256 VCFSDIENN 264
             F+   N 
Sbjct: 393 CVFAAEMNQ 401


>gi|254000173|ref|YP_003052236.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. SIP3-4]
 gi|253986852|gb|ACT51709.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. SIP3-4]
          Length = 950

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 94/212 (44%), Gaps = 17/212 (8%)

Query: 69  LSLVIISITISLLLGYISG-----SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           L + II   +  L G I+        +    ++ +RI  L+  D L+ L N   FI  L 
Sbjct: 476 LWIRIIGQAVYDLHGNITRIEGAIQDISAQKVAESRIQHLAFYDSLTSLPNRQLFIDRLE 535

Query: 124 -------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                    ++  +++F D+D FK +ND  GH +GD ++  ++ ++         V R G
Sbjct: 536 HTLAYSARTSKSGAVLFIDLDNFKTLNDTMGHDLGDMLLQQVAMRIAGCLRESDTVARFG 595

Query: 177 GEEFAAAA--LGSSEQEAAILANDLRK--IIENSQINISSGPSIHITISAGIAERCHK-E 231
           G+EF      L  + QEAA  A  + +  +I  +     SG   H + S G+     +  
Sbjct: 596 GDEFVVLLHELSGNHQEAAAQARLVSEKILISFAHPFQFSGYEHHTSASIGVTLFDQQPT 655

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            +  I+ RAD A+Y +K +GRN +  F     
Sbjct: 656 TVDEILKRADLAMYQSKAAGRNVIRFFDPEMQ 687


>gi|190573375|ref|YP_001971220.1| putative transmembrane GGDEF EAL signalling protein
           [Stenotrophomonas maltophilia K279a]
 gi|190011297|emb|CAQ44910.1| putative transmembrane GGDEF EAL signalling protein
           [Stenotrophomonas maltophilia K279a]
          Length = 685

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 112/278 (40%), Gaps = 24/278 (8%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYI-----------GLTPFY 59
           +W+      E  +     +  S+   + I  + +       +            G+   +
Sbjct: 156 LWIAFRLRAEQRNTTRLRLLASLVMGLAIVGMHYTGMAAARFPEGSICGAVGSGGIDTRW 215

Query: 60  GLEYILVENLSLVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
               ++V  ++ + I++  SL    +   +G +   L  + +R+ Q +  D L+ L N  
Sbjct: 216 LAVLVIVTTVATLGIALVASLFDRQMRVRTGLLADSLAHANDRLIQAALHDPLTQLPNRM 275

Query: 117 AF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
                    I      N+ ++++F D+D FK +ND +GH +GD+++  ++ ++  +    
Sbjct: 276 LLQDRIEQAIEKARRRNQAVAVMFCDLDGFKAVNDAYGHQLGDRLLVAVAQRIGGLLRPQ 335

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               RLGG+EF          +A ++A  +  I    +  +     + ++ S GIA    
Sbjct: 336 DTFARLGGDEFVIVLAIDVPDDAVVVAERI--IAAAGEPFLLDAAELQVSASLGIALYPA 393

Query: 230 KEPIS-TIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
                  ++  AD A+Y  K++GRN    F+     + 
Sbjct: 394 DAGNERELMAHADAAMYHTKETGRNGYTFFTPSMQLSA 431


>gi|26987891|ref|NP_743316.1| diguanylate cyclase [Pseudomonas putida KT2440]
 gi|24982597|gb|AAN66780.1|AE016306_6 YaiC/YhcK/ArdA family protein [Pseudomonas putida KT2440]
          Length = 357

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 117/266 (43%), Gaps = 14/266 (5%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFS----IFIATVIFIANIFLFYIGLTPFY 59
           SL         H   L S +    M   ++       +F   +  +A I    + L P  
Sbjct: 80  SLMGGFWTAAMHFNPLPSVTVLAMMTMNNVAAGGKRMVFRGVLAQLAGILAAILLLGPGL 139

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
            L    ++  + + +     L LG++   +  +L     R+S LS  D L+GL NH A+ 
Sbjct: 140 QLTATPLQVYACLPMLGLYPLALGWVCYQLAIKLGDHKRRLSALSLTDSLTGLFNHGAWK 199

Query: 120 SSLG------SYNEKLSIV-FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L          +  +++   DID+FK IND FGH VGD V+  LS +L          
Sbjct: 200 DLLQLKFQACKQQQGHAVIALIDIDHFKTINDTFGHVVGDCVLRQLSAELRRSLREGDQA 259

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-E 231
           GR GG+EF      +SE +A      LR+ + + +      P + I++S G++      E
Sbjct: 260 GRYGGDEFCVILPETSEAQACQAMERLRERVSSYR--NPQLPHLRISLSIGLSPFQASLE 317

Query: 232 PISTIIYRADQALYVAKKSGRNRVVC 257
                + +AD+ALY+AK +GR++V  
Sbjct: 318 SPEHWLEQADKALYIAKHAGRDQVNF 343


>gi|238023901|ref|YP_002908133.1| diguanylate cyclase [Burkholderia glumae BGR1]
 gi|237878566|gb|ACR30898.1| Diguanylate cyclase [Burkholderia glumae BGR1]
          Length = 505

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 94/182 (51%), Gaps = 10/182 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136
           ++   +L++      ++++LSR D L+GLLN  A  + L    ++       +S++F D 
Sbjct: 312 WLLAFVLRDNLNKQRKLTELSRTDALTGLLNRRALDAVLADEWQRVQRGNTCMSVLFIDA 371

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           D+FKQ ND  GH  GD  + FL+  +   V        R GGEEF A  + +    A  +
Sbjct: 372 DHFKQYNDIHGHAKGDTALRFLAACISRHVRRHGDIAARYGGEEFVAVLVNTDTHGALTV 431

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRN 253
           +  +R+ IE +++     P   +T+S G A     +P  +  +  +AD ALY AK+SGRN
Sbjct: 432 SEAIREDIERNRLADFPEPIPALTVSIGCATGRRGKPASVEALCRQADLALYQAKRSGRN 491

Query: 254 RV 255
           RV
Sbjct: 492 RV 493


>gi|90423710|ref|YP_532080.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
 gi|90105724|gb|ABD87761.1| diguanylate cyclase (GGDEF domain) [Rhodopseudomonas palustris
           BisB18]
          Length = 735

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/213 (29%), Positives = 94/213 (44%), Gaps = 16/213 (7%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ----LSRIDCL 109
           G+ P   L  ++    S++ +        G I  SI  E  I    +++     +  D L
Sbjct: 511 GIFPTRFLGIVITLQFSIMALFYFYGREHG-IRDSIHTEKRIELQELARGLQVQATTDPL 569

Query: 110 SGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +G+ N   F                  S +  DID+FK+IND  GH +GD+V+  LS  L
Sbjct: 570 TGMFNRRVFNEGLAAELVRFNRQQTPFSSLLCDIDHFKEINDVHGHLMGDQVLVHLSRIL 629

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                   F+ R GGEEF    +G+ +  A   A  LR  I  +  +       ++T S 
Sbjct: 630 SRSVRQTDFLARWGGEEFGILLVGADQTAAVEFAEKLRTTIAYTVFDDVG----NLTCSF 685

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G+AE    +   +++ R D ALY AK +GRNRV
Sbjct: 686 GVAECVLGDTPESLLARVDNALYRAKMNGRNRV 718


>gi|332529778|ref|ZP_08405732.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Hylemonella gracilis ATCC 19624]
 gi|332040799|gb|EGI77171.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Hylemonella gracilis ATCC 19624]
          Length = 657

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 120/294 (40%), Gaps = 42/294 (14%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE 67
           +L  +      L    P  F +  +   ++ + T+ ++ N  L   G      +E++++ 
Sbjct: 110 YLIAFPVMAALLLGLRPALFALAVN---AVTLMTIGYLGNTDLHVAGFDERPFVEWVVIT 166

Query: 68  NLSLVI---ISITISLLLGYISGSILK--------------------ELFISYNRISQLS 104
              L I   I+++ ++LL  +  S+ +                    EL  +   +++L+
Sbjct: 167 VNFLFINAVITLSCAVLLQQLERSLERQRDFALSLKEGQDDLRRVNTELQHTAQALNRLA 226

Query: 105 RIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
             D L+GL N    I  L           +  ++++ D+D FK IND  GH  GD ++  
Sbjct: 227 YYDELTGLPNRRLLIDRLNQAQASARRGTQGGTLLYLDLDRFKNINDARGHAAGDALLVA 286

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGS------SEQEAAILANDLRKIIENSQINIS 211
           ++ +L  +      V RLGG+EF   +  S        + A ++A+ +R+     Q  + 
Sbjct: 287 VAKRLSGLLREEDTVARLGGDEFVILSPHSPMDAQGEARAARVVADKVRESF--GQPFML 344

Query: 212 SGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            G       S G+       +    ++  AD A+Y AK +GRNRV  F      
Sbjct: 345 DGQPYSTHASIGVVVLGGMAQGAEELLRDADTAMYRAKSAGRNRVAYFEAGMQQ 398


>gi|303246207|ref|ZP_07332488.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
 gi|302492603|gb|EFL52474.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
          Length = 427

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 11/179 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDID 137
           ++ + +  L     ++   +  D L+G+ N +    +L           + L ++ FDID
Sbjct: 252 LTFTDITPLAEERRQLITRATTDALTGIANRAGIDEALARERNRAARNAKPLCVIMFDID 311

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK +ND+ GH  GD V+A L+  +  +      +GR GGEEF   A  +  ++  +LA 
Sbjct: 312 HFKDVNDSLGHQAGDAVLAALTGLVSGLVRGHDILGRYGGEEFLVVAPETDMEQGRLLAE 371

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            LR  +E      +      +T S G+A     E    ++ RAD ALY AK++GRNRV 
Sbjct: 372 RLRAAVEAHAFPAAG----KVTCSFGLAMLDADESAHALVARADAALYRAKETGRNRVA 426


>gi|86742420|ref|YP_482820.1| diguanylate cyclase/phosphodiesterase [Frankia sp. CcI3]
 gi|86569282|gb|ABD13091.1| diguanylate cyclase/phosphodiesterase [Frankia sp. CcI3]
          Length = 793

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 108/257 (42%), Gaps = 27/257 (10%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           L+ WL        + P   M  + +     + TVI +  + L      P      + V  
Sbjct: 247 LAAWL-----RPRWHPPAKMSGWGVIAVPLVLTVIALGLLVLGATVQLP-----KVTVGL 296

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
            +  +++        +I    L E  +       L+R D L+GL N   FI  L    ++
Sbjct: 297 AAATVLTALARAAFTFIEVQQLAESKV-------LARTDELTGLANRRGFIERLTKAEQR 349

Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                  +++  D+D FK+IND+ GH VGD ++A +  ++           RLGG+EFA 
Sbjct: 350 ATGVGTFALLLLDLDRFKEINDSLGHQVGDALLAQVGTRISDALRPGDLHARLGGDEFAV 409

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRAD 241
               +  + A  +A+ +  ++         G ++H+  S G A    H E    ++ RAD
Sbjct: 410 LLEHADIEAAKRVADRVLAVL--GDPFDVGGVTLHVGASIGAAVYPDHAEDAHILLQRAD 467

Query: 242 QALYVAKKSGRNRVVCF 258
            A+Y AK SGR  V  +
Sbjct: 468 VAMYAAK-SGRTGVESY 483


>gi|328952931|ref|YP_004370265.1| diguanylate cyclase [Desulfobacca acetoxidans DSM 11109]
 gi|328453255|gb|AEB09084.1| diguanylate cyclase [Desulfobacca acetoxidans DSM 11109]
          Length = 254

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 16/203 (7%)

Query: 72  VIISITISLL----LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------- 120
           +++S+ + LL    L Y    + +++  +  ++ +++ +D L+ L N   F         
Sbjct: 48  ILVSLAVILLVLGGLYYFIARLTRKVAAAQEKLVKMASVDDLTRLHNRRFFFEQFGQEVE 107

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               Y   LS +  DID+FK IND +GH +GD+++  ++  L           R GG+E 
Sbjct: 108 RAKRYRRSLSCIMLDIDHFKAINDTYGHLLGDQLLIDIAQILHDNCRLSDLAARYGGDEL 167

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-----EPIST 235
                 +    A  +A  +RK++   QI    G  I  T+S G+A          +    
Sbjct: 168 IVLLPETEAAGAIAIAERIRKLVAQHQIVGEKGEVIRATVSIGVASLGAGQLQDIDHYDR 227

Query: 236 IIYRADQALYVAKKSGRNRVVCF 258
           II  AD ALY AK  GRNR   +
Sbjct: 228 IIRYADDALYRAKTGGRNRTEHY 250


>gi|94971549|ref|YP_593597.1| diguanylate cyclase with GAF sensor [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553599|gb|ABF43523.1| diguanylate cyclase with GAF sensor [Candidatus Koribacter
           versatilis Ellin345]
          Length = 499

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 84/168 (50%), Gaps = 11/168 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           + ++  L+ +D L+G+ N   F       +     Y   LS++  DID FK++ND FGH 
Sbjct: 323 FQQVEALAYVDGLTGVYNRRFFERKITEELERAARYEGTLSVIMVDIDNFKKVNDEFGHL 382

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD+V+  ++         P    R GGEEF+     +S  +A  +A  LR +I +    
Sbjct: 383 LGDEVLRTVAQIFAGALRKPDHCCRYGGEEFSIILPETSGPKALKVAEKLRGLIADYDFP 442

Query: 210 ISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
              G    ITISAG+A+          I+  AD  LY+AK+SGRN V+
Sbjct: 443 ---GIPRRITISAGVADFPTCGTTRDDIVGAADNCLYLAKQSGRNCVM 487


>gi|27382262|ref|NP_773791.1| hypothetical protein bll7151 [Bradyrhizobium japonicum USDA 110]
 gi|27355433|dbj|BAC52416.1| bll7151 [Bradyrhizobium japonicum USDA 110]
          Length = 776

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 59/186 (31%), Positives = 90/186 (48%), Gaps = 11/186 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKL-SIVFFDIDYFKQ 141
            + E   +  RIS L+R D L+ L N  +F   +        + E+L +++F D+D FKQ
Sbjct: 322 DITERTNAEARISHLARYDDLTALPNRVSFRDEIERLLAISHHAERLSALLFVDLDQFKQ 381

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           +ND  GHP GD+++  ++++L  +     FV R GG+EF       SS ++AA LA  + 
Sbjct: 382 VNDTLGHPCGDQLLCAVANRLREMLRPEDFVARFGGDEFVVFQQDISSPEDAASLARRIV 441

Query: 201 KIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +  S+        + I  S GIA          T++  AD ALY AK  GR     F 
Sbjct: 442 ERL--SERYRIDNHLVEIGASVGIALTSPDGISADTLLKNADMALYRAKADGRGTFCFFR 499

Query: 260 DIENNT 265
           D    T
Sbjct: 500 DEMAAT 505


>gi|47091842|ref|ZP_00229637.1| GGDEF domain protein [Listeria monocytogenes str. 4b H7858]
 gi|47019853|gb|EAL10591.1| GGDEF domain protein [Listeria monocytogenes str. 4b H7858]
          Length = 307

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 73/255 (28%), Positives = 116/255 (45%), Gaps = 18/255 (7%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           I     K LE ++       + +F    IA    + N+ L  +   P + +   +  +++
Sbjct: 65  ITALFSKRLEKYN------IWGVFILNIIACGFVVVNLHLI-LAKEPDFWINMFIFVSIA 117

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----N 126
           LVI +++  L+   I     K+LF  Y    Q S +D L+ L N   F   +       +
Sbjct: 118 LVIGAVSAGLMKNMIKS---KQLFQKY---EQDSTLDYLTRLSNVRQFDEKINHVMDDGS 171

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
            +++++  DIDYFK IND +GH  GD ++  L+  L           R GGEEF+   L 
Sbjct: 172 RQVTLMLIDIDYFKNINDTYGHDAGDAILKQLAIILKRNTSDGSEAFRNGGEEFSIVLLD 231

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALY 245
              ++    A  +RK  E+    I SG  + ITIS G++        S  +   AD+ALY
Sbjct: 232 CPIEKGNFFAEQVRKETEDHDFMIPSGKLVKITISVGVSSSKDGANTSEGLFKSADEALY 291

Query: 246 VAKKSGRNRVVCFSD 260
            AK +GRNRV    +
Sbjct: 292 KAKLTGRNRVCIADE 306


>gi|316932665|ref|YP_004107647.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           DX-1]
 gi|315600379|gb|ADU42914.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           DX-1]
          Length = 776

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 83/187 (44%), Gaps = 12/187 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--------KL-SIVFFDIDYF 139
            + E      RI  L+R D L+ L N  +F   +    E        +L +++F D+D F
Sbjct: 320 DITERRNVEARIVHLARYDELTALPNRVSFRDEIERILEAEHGRGKTRLSALLFIDLDQF 379

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           KQIND  GHP GD+++  ++++L  +      V R GG+EF        S ++AA LA  
Sbjct: 380 KQINDTLGHPCGDRLLCSVAERLRDMLRPEDLVARFGGDEFVVFQQNIASNEDAAALARR 439

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   + +    +     + I  S GIA          ++  AD ALY AK  GR     F
Sbjct: 440 IVDRLSDR--YLIDHHVVEIGASVGIAMTSPGTKADILLKNADMALYRAKADGRGTYCFF 497

Query: 259 SDIENNT 265
            +    T
Sbjct: 498 REEMAQT 504


>gi|317127021|ref|YP_004093303.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Bacillus cellulosilyticus DSM 2522]
 gi|315471969|gb|ADU28572.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Bacillus cellulosilyticus DSM 2522]
          Length = 762

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 112/247 (45%), Gaps = 15/247 (6%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE-------NLSLVIISITISL 80
           +I F   +++    +  I    L    L+ F  L   L E       N  +V+       
Sbjct: 251 LIGFFTLYALISLCLTAICIYSLDKFILSRFTTLSDQLKEIQQSRDLNKRIVVSGNDEIS 310

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFD 135
            L      +L  LF S   I +L+  D L+GL N + F S           ++++I+F D
Sbjct: 311 SLKRAINHMLYALFQSQTEIQKLALTDELTGLSNRNDFRSRFEVMVKAEAQQRIAILFID 370

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID FK+IND  GH VGD VI   S +L         VGR GG+EF  A     E+E   L
Sbjct: 371 IDLFKRINDALGHYVGDTVIKETSKKLKENIPPDAIVGRWGGDEFIVALPFEEEREVVTL 430

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           +  L  +++ ++  +  G +  IT S GI+   +       +I +AD A+Y AK+ G+N+
Sbjct: 431 SKQL--LLDIARPIVMKGYTFEITSSIGISTAPNDAKEPEDLIRQADIAMYEAKRHGKNQ 488

Query: 255 VVCFSDI 261
              + D+
Sbjct: 489 YRFYQDV 495


>gi|261220085|ref|ZP_05934366.1| predicted protein [Brucella ceti B1/94]
 gi|265996567|ref|ZP_06109124.1| predicted protein [Brucella ceti M490/95/1]
 gi|260918669|gb|EEX85322.1| predicted protein [Brucella ceti B1/94]
 gi|262550864|gb|EEZ07025.1| predicted protein [Brucella ceti M490/95/1]
          Length = 391

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 91/192 (47%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS--- 130
           L++G I+     I  +   +  R+   +  D L+ L N       ++   S  + LS   
Sbjct: 197 LMVGQIAVELSMIAVDTAQTQERLVSQAMHDDLTQLPNRRYIGKLLTQKKSARDGLSRDG 256

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSS 188
            ++  D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF      G+S
Sbjct: 257 FLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTS 316

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++  I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK
Sbjct: 317 KEQTDIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAK 375

Query: 249 KSGRNRVVCFSD 260
             G+NR   F +
Sbjct: 376 SKGKNRFEYFEE 387


>gi|218548982|ref|YP_002382773.1| hypothetical protein EFER_1630 [Escherichia fergusonii ATCC 35469]
 gi|218356523|emb|CAQ89146.1| conserved hypothetical protein; PAC/PAS and GGDEF domains
           [Escherichia fergusonii ATCC 35469]
          Length = 412

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--------EKLSIVFFDIDYFK 140
            + E       + Q +  D L+GLLN   F   L  +N        +  S++  D D FK
Sbjct: 240 DITEQKRLEQELEQAAMRDALTGLLNRRQFF-LLTEHNSSQPGLMSQDYSLLLIDTDRFK 298

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GH  GD V+  L+  L         V R GGEEF      ++  +A  LA  +R
Sbjct: 299 SVNDLYGHQKGDDVLCVLARTLESCARKGDLVFRWGGEEFVLLLPRTTLDDALALAETIR 358

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +   +I ++  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 359 AQVA--KITLTGLP--RFTVSIGVARHEIDETIDALFKRVDDALYRAKNDGRNRV 409


>gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [Herminiimonas arsenicoxydans]
 gi|133737925|emb|CAL60970.1| conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 568

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 90/173 (52%), Gaps = 12/173 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQIND 144
           EL      + QL+R D L+GL N       L     +         I+  D+D+FK++ND
Sbjct: 390 ELQELNITLEQLARTDALTGLANRMHTNERLAEEFARFKRSKIPYCILMLDVDFFKRVND 449

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGD+V+  ++  L        FVGR GGEEF +    +    A ++A  +R  IE
Sbjct: 450 IYGHGVGDEVLKHVASILSATVRKTDFVGRHGGEEFLSILPMTDSSAAMVVAEKIRNTIE 509

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTI-IYRADQALYVAKKSGRNRVV 256
           ++ I    GP  ++T+S G+ E    +    + + RAD+ +Y AKKSGRN+V+
Sbjct: 510 STPI----GPVGNLTVSIGVQEVTVNDINEDVAVTRADECMYQAKKSGRNKVI 558


>gi|170020293|ref|YP_001725247.1| diguanylate cyclase with PAS/PAC sensor [Escherichia coli ATCC
           8739]
 gi|169755221|gb|ACA77920.1| diguanylate cyclase with PAS/PAC sensor [Escherichia coli ATCC
           8739]
          Length = 410

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D + FK
Sbjct: 238 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTNRFK 296

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 297 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 356

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 357 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 407


>gi|269929071|ref|YP_003321392.1| serine/threonine protein kinase [Sphaerobacter thermophilus DSM
            20745]
 gi|269788428|gb|ACZ40570.1| serine/threonine protein kinase [Sphaerobacter thermophilus DSM
            20745]
          Length = 1765

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 9/174 (5%)

Query: 92   ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
            E    +  + +L+  D L+G  N    +       S    +N  L+ +  DID FK++ND
Sbjct: 1592 ENARLFAEVQRLAVTDDLTGTYNRRHLLTTAERELSRAQRFNRPLAAIILDIDEFKRVND 1651

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
              GH VGD+V+  ++D+L         +GR GGEEF      +    A  +A  LR  I 
Sbjct: 1652 AHGHAVGDEVLRAVADRLRSGLREVDVLGRYGGEEFVIILPETDLISAYQIAERLRNSIA 1711

Query: 205  NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
               I  S+GP + +TIS G+A         ++++ R D  LY AK+ GRNRVV 
Sbjct: 1712 AEPIATSTGP-VSVTISLGVAAADPTTPDFASLLSRIDDLLYTAKRRGRNRVVV 1764


>gi|229174176|ref|ZP_04301711.1| Sensory box/GGDEF [Bacillus cereus MM3]
 gi|228609297|gb|EEK66584.1| Sensory box/GGDEF [Bacillus cereus MM3]
          Length = 781

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 10/200 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121
           +++V I I       YI    +  +    + I+ L+  D ++G+ N   F       I  
Sbjct: 322 VTIVPIMIEGQTFGSYIMVKDITRMKQQQDEINYLAFHDTVTGIGNRIFFQQELDRSIER 381

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
           +    +K  +++ D++ FK IND  GH +GD V+  ++ +        + + R+GG+EFA
Sbjct: 382 VQKTQDKFGLLYIDLNRFKTINDTLGHAIGDSVLKEVAKRFRTCLSPAIPLARIGGDEFA 441

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRA 240
                 +EQ+   L   L +I E  +  + +  S ++++S GIA         +T++  A
Sbjct: 442 IIVHNKTEQQLLDLCEILFRITE--EPFVINQHSFYLSLSIGIALYPFGGTNATTLLQHA 499

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D A+Y AK+ G N V  + +
Sbjct: 500 DIAMYSAKEEGSNAVCIYDE 519


>gi|254508382|ref|ZP_05120503.1| hypothetical protein VPMS16_744 [Vibrio parahaemolyticus 16]
 gi|219548695|gb|EED25699.1| hypothetical protein VPMS16_744 [Vibrio parahaemolyticus 16]
          Length = 596

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 116/234 (49%), Gaps = 15/234 (6%)

Query: 37  IFIATVIFIANI-FLFYIGLTPFYGLEYILVENLSLVIISIT--------ISLLLGYISG 87
           + +A ++F+  I +L +   +P   L    +  LS +  + T        I  L    S 
Sbjct: 364 LVLAALLFVGLISYLSHYIASPITDLRR-RISTLSRMGKADTKFSNRDDEIGDLFQAFSD 422

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQIND 144
            +  ++     ++++L+R D L+G+LN  A +     +        I   D+D+FKQIND
Sbjct: 423 -MASKIKQKEMQLTRLAREDPLTGVLNRRALVDGAEEIRRLASSCYICMMDLDHFKQIND 481

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD V+    D +          GRLGGEEFA     ++ +EAA +A  +R  +E
Sbjct: 482 QCGHSVGDDVLVAFCDAVAKETRESDMFGRLGGEEFALLLPNTTLREAAQIAERIRVRVE 541

Query: 205 -NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +    + S  ++ +T+S G+    +++  + ++  AD+ LY AK+SGRN++V 
Sbjct: 542 CDLAEKLCSSHTLPVTVSMGLVSWPNEKAFTQVLDHADKLLYKAKQSGRNQIVA 595


>gi|146284369|ref|YP_001174522.1| GGDEF domain-containing protein [Pseudomonas stutzeri A1501]
 gi|145572574|gb|ABP81680.1| GGDEF domain protein [Pseudomonas stutzeri A1501]
          Length = 621

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 78/170 (45%), Gaps = 8/170 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L        Q +  D L+GL N +A+   L         Y   L +   D+D+FK++ND 
Sbjct: 450 LRGHLEEQRQKALQDPLTGLPNRAAWNERLDLEFARWQRYGGDLLLAVLDVDHFKRVNDG 509

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD+V+  +  +L        F+ R GGEEF      +  +    L   LR  I +
Sbjct: 510 YGHLAGDRVLKIIGTELQKRLRKTDFIARFGGEEFVVLLPNTPYEAGRQLMETLRDSIGS 569

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              +   G  + IT+SAG+      +       RAD+ALY AK SGRNRV
Sbjct: 570 CPFHFK-GERVAITLSAGLTAFVTGDTAERAFERADRALYRAKDSGRNRV 618


>gi|119774691|ref|YP_927431.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B]
 gi|119767191|gb|ABL99761.1| diguanylate cyclase [Shewanella amazonensis SB2B]
          Length = 729

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +  ++  L+  D L+GL N            +      E +++V  D+D+FK IND
Sbjct: 536 ELEKANQKLQALAERDPLTGLYNRRYTTAGFAPLQAMCERSGEAIAVVILDLDFFKAIND 595

Query: 145 NFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           N GH  GD+ +  ++  L   F      V R GGEEF      ++  +     N LR+ +
Sbjct: 596 NHGHLAGDECLRQVAILLTQHFKRDSDLVARYGGEEFLLILPMTNALKIEHHLNLLREQL 655

Query: 204 ENSQINISSGPS-IHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               + +      IH+++S G  +A     + +   +  AD  LY AK  GRNRVVC
Sbjct: 656 ARHPVVLPGAQEPIHLSVSVGAAVANASFSDTLEAWLKVADDNLYQAKAEGRNRVVC 712


>gi|119486033|ref|ZP_01620095.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Lyngbya sp. PCC 8106]
 gi|119456808|gb|EAW37936.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF &  EAL
           domains) with Response Regulator Receiver modulation
           [Lyngbya sp. PCC 8106]
          Length = 601

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 12/186 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQI 142
           K+L ++  ++ +++  D L+GL N    +  L             + +++F D D FK +
Sbjct: 153 KQLEVANAKLLEMALHDPLTGLPNRRFLMEQLEQSLNRAKQDSQSQFAVLFLDCDRFKVV 212

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRK 201
           ND+ GH VGD+++  LS +L  +      + RLGG+EF          Q+   +AN + +
Sbjct: 213 NDSLGHLVGDELLIALSRRLETLLNPDDILARLGGDEFIILLKSIHHSQQVTQIANSILE 272

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +  SQ     G  + I  S GIA      E    ++  AD A+Y AK  GR R   F  
Sbjct: 273 AL--SQPFQLEGYEVFINTSIGIALWHPNYENPEHLLRDADNAVYKAKALGRGRYHIFDS 330

Query: 261 IENNTC 266
             +   
Sbjct: 331 TMHVAA 336


>gi|75909377|ref|YP_323673.1| response regulator receiver modulated diguanylate cyclase [Anabaena
           variabilis ATCC 29413]
 gi|75703102|gb|ABA22778.1| response regulator receiver modulated diguanylate cyclase [Anabaena
           variabilis ATCC 29413]
          Length = 344

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 59/179 (32%), Positives = 88/179 (49%), Gaps = 11/179 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           + K+L  +   +  L+ +D L+GL N   F + L             LS++  DIDYFK 
Sbjct: 160 VYKQLEAANMALQHLANVDGLTGLANRRRFDNYLNTQWINLVQKGAPLSLILCDIDYFKF 219

Query: 142 INDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND +GHP GD  +  +   L          V R GGEEFA     +  + A  +A+ ++
Sbjct: 220 YNDQYGHPAGDICLQKVGAVLSYKAQKHQDLVARYGGEEFAVIMPYTHAKGAIYVAHTIQ 279

Query: 201 KIIENSQINIS-SGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVV 256
             + + QI    S  S HIT+S G+A      +   S +I  AD+ALY AK+SGR+R+ 
Sbjct: 280 TSVRDLQITHDKSAVSQHITLSMGVATITPTWESSPSDLIAAADKALYKAKESGRDRIC 338


>gi|323497772|ref|ZP_08102786.1| c-di-GMP phosphodiesterase A-related protein [Vibrio sinaloensis
           DSM 21326]
 gi|323317119|gb|EGA70116.1| c-di-GMP phosphodiesterase A-related protein [Vibrio sinaloensis
           DSM 21326]
          Length = 684

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/253 (25%), Positives = 119/253 (47%), Gaps = 23/253 (9%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLT-PFYGL-EYILV----ENLSLVIISITISLL 81
           ++ F +F +I + +++     F FY  L+ P   L E++      +N +L   +      
Sbjct: 162 ILLFDLFRNILLTSILL----FFFYQKLSKPLVTLIEWVRSLQNNKNGTLPPPTQYRDDE 217

Query: 82  LGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           LG+++ +   + K+   +  +++QL+  D L+GL N S  +  LG         +E  ++
Sbjct: 218 LGHLAKTFHTLWKDREAAEAKLNQLAYYDSLTGLANRSLLLQLLGKEIDRANLKSESGAL 277

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
            + D+D FK IND+ GH +GD ++  +S ++           R+GG+EFA     +S  +
Sbjct: 278 FYLDLDRFKTINDSLGHTIGDHLLKAISMRIEAWVKDDYTAARIGGDEFAILLPHTSSDK 337

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKS 250
           A  LA  L  +I N          ++ ++S GIA           ++ +AD ALY AK  
Sbjct: 338 ARELAQQLLALISN--PYSIDDHQLYCSVSVGIAVFPSVGGTNIDVLRQADTALYRAKVG 395

Query: 251 GRNRVVCFSDIEN 263
           GRN+ + +     
Sbjct: 396 GRNKYMFYEPEMQ 408


>gi|312970479|ref|ZP_07784660.1| diguanylate cyclase domain protein [Escherichia coli 1827-70]
 gi|310337128|gb|EFQ02266.1| diguanylate cyclase domain protein [Escherichia coli 1827-70]
          Length = 371

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              + P + + IS G A    +       +  AD ALY AKK+GRNR   
Sbjct: 322 P--NTPQVTLRISVGGAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEV 369


>gi|262274946|ref|ZP_06052757.1| sensory box/GGDEF family protein [Grimontia hollisae CIP 101886]
 gi|262221509|gb|EEY72823.1| sensory box/GGDEF family protein [Grimontia hollisae CIP 101886]
          Length = 580

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 18/191 (9%)

Query: 84  YISGSILKELFISYNRI-------SQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
            +    + E   +  ++        +LS +D L+ + N  +F   L           E L
Sbjct: 382 LVIARDVTERKATQQQLADAIMELEELSFVDGLTKVANRRSFDEQLVKMWHAHIREKEPL 441

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSS 188
           S++F DIDYFK  NDN+GH  GD+ +  ++D    V   P   V R GGEEFA     ++
Sbjct: 442 SLIFCDIDYFKPYNDNYGHQQGDEALRQVADVFQRVTRRPLDAVARYGGEEFAILLPNTT 501

Query: 189 EQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAE--RCHKEPISTIIYRADQALY 245
           E+   ++A ++ + ++ + I  + S  +  IT+S GIA       +    ++  ADQALY
Sbjct: 502 EEGVLVVAQNIAEELQKAAIPHAFSKVADRITLSQGIATLRPVAGQDYGDLVSLADQALY 561

Query: 246 VAKKSGRNRVV 256
            AK +GRN++V
Sbjct: 562 CAKNAGRNQIV 572


>gi|218512873|ref|ZP_03509713.1| putative sensory box/GGDEF family protein [Rhizobium etli 8C-3]
          Length = 194

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 2/170 (1%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-EKLSIVFFDIDYFKQINDN 145
             +L     S N++++L+  D L+G LN         +   + +S++  DID+FKQ+ND 
Sbjct: 16  AMVLMAAERSRNQLTELAHHDPLTGALNRGGLAQHASALGSQPISLLIMDIDHFKQLNDR 75

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD+++   +     +      + R GG+EF A     S ++A  +A  +R     
Sbjct: 76  HGHAAGDEILRLFARVSRGIMRPQDLLARQGGDEFLAVLKNLSREDAMAIAERIRLEFAA 135

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +      ++  T+S G+A R       +++++AD+ALY +K+ GRNRV
Sbjct: 136 VVMQRPD-LAVFPTLSIGVATRISGGDFESLMHKADEALYRSKREGRNRV 184


>gi|158337002|ref|YP_001518177.1| EAL domain-containing protein [Acaryochloris marina MBIC11017]
 gi|158307243|gb|ABW28860.1| EAL domain protein [Acaryochloris marina MBIC11017]
          Length = 608

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 12/181 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           +L ++   + +L+ +D L+ + N   F          L    + LS++  D+D+FK  ND
Sbjct: 156 QLAVANLELERLAAVDSLTRVYNRRRFDEVFLTEWNRLLREEKPLSLIMCDVDHFKAYND 215

Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  +  V       V R GGEEF      +    A  +A  +R  +
Sbjct: 216 TYGHQAGDLCLEKIAQTIAKVAKRPADCVARYGGEEFVVVLPNTDISGATHVAEAIRGAV 275

Query: 204 ENSQINISSGP-SIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVC-FS 259
            N  +  S+ P S  IT+S G+A +   E I  S +I  AD+A+Y AK+ GR+R+   ++
Sbjct: 276 HNLNLPHSTSPISNRITLSLGVACQVPDEAIAPSLLIEAADRAMYTAKEGGRDRMQVHYA 335

Query: 260 D 260
           D
Sbjct: 336 D 336


>gi|149910113|ref|ZP_01898760.1| hypothetical protein PE36_13142 [Moritella sp. PE36]
 gi|149806838|gb|EDM66800.1| hypothetical protein PE36_13142 [Moritella sp. PE36]
          Length = 399

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 106/243 (43%), Gaps = 14/243 (5%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE-NLSLVIISITIS 79
           + +P+  +    +F       V  ++ I L      P   LEYI    N + VI  + + 
Sbjct: 156 TLTPYLIIAMLGLFPLTVSGGVALLSVISL------PLAMLEYIQYSGNYTAVIDKLWLF 209

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           +L G I   +     +   ++ + S +D L+GL+N    +  +        +     S++
Sbjct: 210 VLFGGICLWLQSGQMVMLMKLYRESTVDSLTGLINRRVLMRQVTGIAKNSNAAQGSFSVM 269

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            FD+DYFK++ND +GH VGDKV+  +S  L         + R GGEEF          +A
Sbjct: 270 MFDLDYFKRVNDTYGHMVGDKVLVKVSSLLKQELRNYDVIARFGGEEFLVVMPHLELAQA 329

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             +A  + + I  S +       I  T S G+ +    E I  +  R D  LY AK  GR
Sbjct: 330 TQVALRVAEAIRKSSVMTDEQQEISFTTSIGVTQYIADESIVQLFKRVDDLLYQAKVQGR 389

Query: 253 NRV 255
           +RV
Sbjct: 390 DRV 392


>gi|119483385|ref|ZP_01618799.1| PleD-like protein [Lyngbya sp. PCC 8106]
 gi|119458152|gb|EAW39274.1| PleD-like protein [Lyngbya sp. PCC 8106]
          Length = 638

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 11/189 (5%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIV 132
           L +      + ++L  +  ++  L+  D L+ + N   F   L    ++       L ++
Sbjct: 441 LAIAIQQSQLYEKLQKANEQLHYLANHDQLTQIPNRRYFDEYLEQEWKRSVREQTQLILI 500

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
             D+DYFKQ ND +GHP GD+ +  ++  L  V+     F+ R GGEEFA     +  + 
Sbjct: 501 LCDLDYFKQYNDTYGHPTGDQCLLKVAQILNQVIQRPADFIARYGGEEFAIILPNTDVEG 560

Query: 192 AAILANDLRKIIENSQINISSG-PSIHITISAGIAERCHK--EPISTIIYRADQALYVAK 248
              +  +++  +    I  ++      +T+S G+A         +  +I RADQALY  K
Sbjct: 561 GIHVIKNIQNKLYTLNIPHTNSLVDNQVTLSFGLASTYPNLQSSVQALINRADQALYQTK 620

Query: 249 KSGRNRVVC 257
           + GRN    
Sbjct: 621 QRGRNNYSI 629


>gi|313496579|gb|ADR57945.1| Diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida BIRD-1]
          Length = 342

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 9/178 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
              + E       + +L+  D L+   N   F                 L+ +  DID F
Sbjct: 164 AEDITEKKQLEGELQRLATTDVLTQSSNRRHFFECAQQAFDSARADGTPLAFLLLDIDDF 223

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND++GH  GD+V+  ++D    V       GR+GGEEFAA   G + Q A  +A  L
Sbjct: 224 KRINDSYGHQEGDQVLQHIADSGKAVLRRGDLFGRIGGEEFAAVFPGCNAQVAEQIAERL 283

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
           ++ I++   +     +  +T+S G+     ++  + ++  RAD A+Y AK+ G+N++V
Sbjct: 284 QRQIQHLSFSHGQ-QTYGVTVSQGLTGLTDEDVALDSLYARADAAMYQAKRQGKNQIV 340


>gi|91774884|ref|YP_544640.1| diguanylate cyclase [Methylobacillus flagellatus KT]
 gi|91708871|gb|ABE48799.1| diguanylate cyclase (GGDEF domain) [Methylobacillus flagellatus KT]
          Length = 614

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 14/183 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           ++  +L      +  ++  D L+GL N +    SL     +       ++++  D+D FK
Sbjct: 433 AVNTQLRHKERELRYMALHDALTGLANRTLMNDSLKRALARAARDKGIVAVLLIDLDGFK 492

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
            IND +GH  GD V+  ++ +L  V        RLGG+EF           +A  +A  L
Sbjct: 493 GINDTYGHAAGDLVLQVVAARLRKVTRVSDVTARLGGDEFVVVLEDIHGVDDAVRIAEKL 552

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCF 258
              I   +  +  G  + I+ S GIA     +     ++ +AD+A+Y AK +GRNR    
Sbjct: 553 ---IRELERPVEGG--LQISASIGIALSVEGQLAEDALLRQADKAMYEAKLAGRNRWHVS 607

Query: 259 SDI 261
           ++I
Sbjct: 608 AEI 610


>gi|329912972|ref|ZP_08275854.1| putative GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327545470|gb|EGF30674.1| putative GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 781

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 57/189 (30%), Positives = 93/189 (49%), Gaps = 10/189 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDY 138
           + +++++L     R  QL+ +D L+G+ N   F               +  ++ F D+D 
Sbjct: 332 NQTLIQQLETEKTRAFQLASLDFLTGIPNRMKFYELAEIELVRARRSRKLTAVFFLDLDK 391

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILAN 197
           FK IND  GH VGD ++  ++ +L           RLGG+EFA    G    +A A +AN
Sbjct: 392 FKAINDTHGHGVGDLLLQQVASRLRHSLRGYDLAARLGGDEFAVLVSGLDSDDAVATVAN 451

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            L   +  + +++  G  + +T S GIA      E I T++ RAD+A+Y+AK+SGR    
Sbjct: 452 KLVASLSATYLDL-DGHDLDVTPSIGIALYPGDGEEIDTLLSRADRAMYLAKQSGRGCYR 510

Query: 257 CFSDIENNT 265
            +    N T
Sbjct: 511 FYEASLNAT 519


>gi|289166393|ref|YP_003456531.1| regulatory protein (GGDEF domain) [Legionella longbeachae NSW150]
 gi|288859566|emb|CBJ13534.1| putative regulatory protein (GGDEF domain) [Legionella longbeachae
           NSW150]
          Length = 543

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 93/168 (55%), Gaps = 8/168 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           ++     D L+GLLNHS+ ++ L          +  LS V  DID FK IND +GHP GD
Sbjct: 372 LNYYMTTDSLTGLLNHSSVLNRLNIEITRAKQQDSPLSFVMIDIDNFKLINDTYGHPFGD 431

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            VI  L+  L++       +GR GGEEF     G++ + +  + N+LR    N    ++ 
Sbjct: 432 VVIKKLASMLMMSLRNQDIIGRYGGEEFVLILPGANLENSQKICNNLRLQFSNHTFTVND 491

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              +H+TIS GI+   H    + I+  ADQALY AK++G+N+VV +S+
Sbjct: 492 -HQVHVTISIGISSLTHSYDFNDIVNYADQALYKAKQNGKNQVVVYSE 538


>gi|283778699|ref|YP_003369454.1| diguanylate cyclase [Pirellula staleyi DSM 6068]
 gi|283437152|gb|ADB15594.1| diguanylate cyclase [Pirellula staleyi DSM 6068]
          Length = 500

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 88/184 (47%), Gaps = 18/184 (9%)

Query: 88  SILKELFISYNRISQLSR----------IDCLSGLLNHSAFISSLGS------YNEKLS- 130
            + K+L  +  R+   +R           D L+ + N  AF   L        +N+ +S 
Sbjct: 95  RMQKQLVSAEERLQAQARQIESHAVEARTDALTQVANRRAFDDELRRCLSERDHNKTVST 154

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D+FK+ ND  GH  GD+V+  ++  L   F +   V R GGEEFA    G S  
Sbjct: 155 LMILDVDHFKKFNDTHGHQAGDEVLRGVARVLRNAFSSAELVARYGGEEFAIVFPGVSFA 214

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
              I A   R+ +  +      G S+ +T SAG++E    +     I RAD+ALY +KK+
Sbjct: 215 ACQISAEKARQAVATANFRF-QGKSLSVTASAGLSELLPTDNEQEWIRRADEALYASKKA 273

Query: 251 GRNR 254
           GRN 
Sbjct: 274 GRNC 277



 Score = 82.0 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 4/145 (2%)

Query: 118 FISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
            I  L  +      LS++   +D   ++    G      V+   S  +         V R
Sbjct: 343 LIRRLAQWRRGGAPLSLMMVQVDGLMRVATEHGPTAAATVLRVTSQIMQATMRDMDHVTR 402

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
           LG + FA    G+   +A  ++  LR  ++  ++   +G +   TI+ G  E  + + + 
Sbjct: 403 LGEDTFALLLPGAKIIDAHSVSERLRAAVQKCRLPRRAGAAWF-TITVGAVEVSNGDDMR 461

Query: 235 TIIYRADQALYVAKKSGRNRVVCFS 259
            I+ RA +AL  A   GRN V+   
Sbjct: 462 LILERARRALQAAIAQGRNCVIAHD 486


>gi|330960970|gb|EGH61230.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 705

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 96/211 (45%), Gaps = 13/211 (6%)

Query: 64  ILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +LV +L+++ +++   +L  ++      +   L  +   ++ L+  D L+GL N      
Sbjct: 220 VLVASLTVLSLTLFACILDAHLEARTAVLATSLSQANQELTHLAMHDNLTGLPNRVLLTE 279

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            +     +        +++F D+D FK +ND FGH  GD ++  ++ +L         + 
Sbjct: 280 RIEQAMARADETGGCFALMFMDLDGFKPVNDAFGHHTGDLLLRQVALRLRQNVNRHDTLA 339

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           R+GG+EF        +Q+A  +A  +R++ E S   +     + I++S GI     H   
Sbjct: 340 RVGGDEFVLLIELDDQQDALTVA--IRQVSEISNPFLIGEHQLQISLSIGICIYPGHGAT 397

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
              ++  AD A+Y  K +G+N    F    N
Sbjct: 398 QHELLVNADAAMYHTKAAGKNGHSFFDVSMN 428


>gi|227111556|ref|ZP_03825212.1| putative signaling protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 722

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 7/177 (3%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEK-LSIVFFDIDYFKQIND 144
             + E   +  R+  L+ +D L+GL N +   S+L +   NE  + I+  D+D FK +ND
Sbjct: 280 RDITERRRNEERLFLLAHLDPLTGLANRTLLTSNLETALKNEPAVCIMMVDLDGFKDVND 339

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
           + GH  GD ++  ++ ++     +   V R+GG+EFA    G S ++ A  +A  +  I 
Sbjct: 340 SLGHSSGDNILVHVAKKIKATVRSGDVVARMGGDEFALLFPGLSDKKVAGKIAEQI--IH 397

Query: 204 ENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           E SQ  +     I+I+ S G          +  ++  AD ALY AK  GRN    F+
Sbjct: 398 EISQAMVIDDHQINISASIGAVLYPEYGLTVQDLLTSADLALYQAKSEGRNCYRFFT 454


>gi|77361535|ref|YP_341110.1| two-component response regulator [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876446|emb|CAI87668.1| putative two-component response regulator [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 299

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/190 (30%), Positives = 89/190 (46%), Gaps = 13/190 (6%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           S++   +   +L  +    + +  L+ ID L+ + N      +L          N  LS+
Sbjct: 111 SIVRVRVRNQLL--IKQKNDLLEMLASIDGLTEIPNRRNLDENLSREWRKSKRNNTPLSV 168

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +  DID+FK+ ND +GH  GD  +  ++  L         F+ R GGEEFAA   G  + 
Sbjct: 169 LLMDIDHFKRYNDTYGHRAGDDCLKAVAQALAAQCERGSDFIARYGGEEFAAVLPGVDKA 228

Query: 191 EAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHK--EPISTIIYRADQALYVA 247
           EA   AN LR  +    I   +  +  H+TIS G+A   +   E    ++  AD  LY A
Sbjct: 229 EATGFANKLRNAVNALNIAHKASLNAEHVTISIGVASTENASIETEQALLEEADLGLYAA 288

Query: 248 KKSGRNRVVC 257
           K+ GRN+VV 
Sbjct: 289 KEGGRNQVVA 298


>gi|332533971|ref|ZP_08409823.1| sensory box/GGDEF/EAL domain protein [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036607|gb|EGI73073.1| sensory box/GGDEF/EAL domain protein [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 696

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 78/189 (41%), Gaps = 11/189 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
            +    + E   S   I   +  D L+ L N    +  L          NEK +++F D+
Sbjct: 246 MVIIRDITEQHKSDEIIRHQAYYDSLTLLPNRFLALDRLSQLLIEAQRNNEKAAVLFLDL 305

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FK+IND+ GH  GDK++   + +L         VGRLGG+EF     G +    A  +
Sbjct: 306 DDFKKINDSLGHETGDKLLIESAQRLQEALRKDDTVGRLGGDEFIVLLRGITDHHAALKI 365

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
              L             G    +T S G+A        ++ ++  AD A+Y AK  GRN 
Sbjct: 366 TEKLLNNFRA--PFKIEGREHILTASIGVAIYPENGTTVADLLRNADTAMYQAKSYGRNT 423

Query: 255 VVCFSDIEN 263
              F+   N
Sbjct: 424 YSFFTKKMN 432


>gi|254826937|ref|ZP_05231624.1| GGDEF domain-containing protein [Listeria monocytogenes FSL N3-165]
 gi|258599317|gb|EEW12642.1| GGDEF domain-containing protein [Listeria monocytogenes FSL N3-165]
          Length = 357

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 67/233 (28%), Positives = 108/233 (46%), Gaps = 11/233 (4%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           F I+   ++ I       I L      E     N+++ ++   I+L++G +S  ++  + 
Sbjct: 126 FKIWGVFILNIIACSFVVINLHLILARESHFWINMTVFVL---IALVIGAVSAGLMSNMI 182

Query: 95  IS---YNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFG 147
            S   + +  Q S +D L+ L N   F       + + + +++++  DIDYFK IND +G
Sbjct: 183 KSKQLFQKYEQDSTLDYLTKLSNVRQFDEKINHVMDAGSRQVTLMLIDIDYFKNINDTYG 242

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD ++  L+  L           R GGEEF+   L  S +E   +A  +RK  E   
Sbjct: 243 HDAGDAILKQLAVILKESTTDGSEAFRNGGEEFSIVLLDCSIEEGNKVAEQVRKETEEHD 302

Query: 208 INISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFS 259
             I  G  + ITIS G++        S  +   AD+ALY AK +GRNRV    
Sbjct: 303 FVIPGGQIVKITISVGVSSSKDGANTSEGLFKSADEALYKAKLTGRNRVCIAD 355


>gi|159184597|ref|NP_354083.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|159139899|gb|AAK86868.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 430

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/179 (34%), Positives = 90/179 (50%), Gaps = 11/179 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQIND 144
           E      R+ +L+  D L+GL N  +F          +   +E  ++   DID+FK+IND
Sbjct: 243 ETLKQLKRLRELAERDHLTGLPNRRSFFERTRALMDVINDNDESGAVAILDIDHFKKIND 302

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GH  GD+ +  L++ L            RLGGEEFA    G   + A     +LR+ +
Sbjct: 303 TLGHDAGDRALKKLAELLQGMCDEQRHIPARLGGEEFAVFLRGLDARAAYAFCEELREQV 362

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           E +   +S G S+ +TIS G+ E    EP    +  ADQ LY+AK +GRNRV  +SDI 
Sbjct: 363 EKNGRQLS-GSSLALTISLGVVEIEKGEPFDNQLNAADQLLYLAKANGRNRV--YSDIM 418


>gi|71278036|ref|YP_270580.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71143776|gb|AAZ24249.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 364

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 73/236 (30%), Positives = 118/236 (50%), Gaps = 17/236 (7%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY-ISGSILKE-- 92
           S++ A ++F  ++ +  I +   +G E+  +  + L+ I I  ++LL   I  S L    
Sbjct: 130 SLYKAYLLFFFSMIIPQIIIMISFG-EHQHIGLVVLIFIYIPATILLSRAIYNSRLSSVE 188

Query: 93  ----LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
               L  S N + +LS +D L+ + N   F         +     + +S++  DID FK+
Sbjct: 189 ANDSLEKSVNELHRLSIMDNLTNIYNRRYFFEMSKKLIATAFREQKPVSLIMLDIDLFKR 248

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +NDN+GH  GD ++  L  +L  V        R+GGEEF      +S + A ++A  +R 
Sbjct: 249 VNDNYGHQAGDCILIDLVKELEKVMRKSDVFARIGGEEFTILLNNTSLEGAKVIAEKMRL 308

Query: 202 IIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            IEN ++ I +  SI ITIS G++E       I  +  +AD+ LY AK  GRNRV 
Sbjct: 309 TIEN-KVFIYNTTSIDITISIGVSELNTENTSIEDLYKQADKQLYRAKHKGRNRVC 363


>gi|24372139|ref|NP_716181.1| response regulator [Shewanella oneidensis MR-1]
 gi|24346032|gb|AAN53626.1|AE015501_9 response regulator [Shewanella oneidensis MR-1]
          Length = 575

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 11/184 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            S+   L  S+ ++ +L+  D L+ L+N   F       I+ +   N+ L+++  D+D F
Sbjct: 125 ASMALALRNSHEKLKELAEHDSLTKLMNRYGFELCLNRAIARVKRSNDLLAVILLDLDDF 184

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILAND 198
           K IND  GH  GD ++  ++ +L  V      + RLGG+EF      +  +    I+AN 
Sbjct: 185 KAINDTLGHQTGDILLVKVASRLSTVLRDGDVIARLGGDEFVVLVTDNDYKYFPMIVANR 244

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
           L K  E  ++       + I  S G+A         S ++  AD A+Y AKK GRN++  
Sbjct: 245 LLKAFE--EVFCLGDNDVMIGASIGVAFYNEAASDSSELMKCADIAMYRAKKMGRNQIQF 302

Query: 258 FSDI 261
           +S+ 
Sbjct: 303 YSEA 306


>gi|127512968|ref|YP_001094165.1| diguanylate cyclase [Shewanella loihica PV-4]
 gi|126638263|gb|ABO23906.1| diguanylate cyclase [Shewanella loihica PV-4]
          Length = 347

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 92/205 (44%), Gaps = 10/205 (4%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           L   L E +S V+IS              +  L      ++     D L+ L N  AF  
Sbjct: 141 LVDTLAEEVSQVVISNRQMEANLKTMNQEVAALKAEMEDLNIAVMTDQLTSLRNRRAFDE 200

Query: 121 SLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            +  + ++        S++  DID FKQ ND  GH VGDKV+A+++  L        FV 
Sbjct: 201 EVLGHIQRFRREQRLSSLLLVDIDNFKQFNDTHGHLVGDKVLAYIALALKQGVKGDDFVA 260

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH---ITISAGIAERCHK 230
           R GGEEF      +    A ++A  LR  I    ++I     +    IT+S G+A     
Sbjct: 261 RYGGEEFVILLPDTEHSGAMVVAEQLRARIAERHLSIGKDKKLSLGAITVSIGVATLRLD 320

Query: 231 EPISTIIYRADQALYVAKKSGRNRV 255
           +   + + RAD+ALY AK +GRN V
Sbjct: 321 DDRESYLVRADEALYRAKSAGRNCV 345


>gi|318607213|emb|CBY28711.1| inner membrane protein YfiN [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 453

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 72/260 (27%), Positives = 117/260 (45%), Gaps = 32/260 (12%)

Query: 31  FSIFFSIFIAT---VIFIANIFLFYI--GLTPFYGLEYILVENLSL--VIISITISLL-- 81
            +  F   I +    IF++   LF I   L     + + +  N S    + S  I+ L  
Sbjct: 170 LAGLFVCLILSTLVAIFLSRRMLFGIIGSLNRITEVAHNVSRNRSFGQRVPSAQIAELNE 229

Query: 82  LGYISGSILKELF-------ISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEK 128
           L +    +L+EL           + ++  +  D L+GL N + F   L         NE 
Sbjct: 230 LSHDFNGLLEELEVWQKHLTQENDSLAHRAAHDSLTGLANRAYFEGRLSRTLSDCKTNEH 289

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGS 187
           ++++F D D FK+INDN+GH  GD V+  ++D+L  +      V RLGG+EFA       
Sbjct: 290 VAVLFLDGDRFKEINDNYGHAAGDVVLTTIADRLRALLRESDLVARLGGDEFAILLAPIY 349

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYV 246
           +  +  I+AN++ K +    I +  G  I  ++S G+A    H +    ++ RAD+A+Y 
Sbjct: 350 NTDDVLIIANNIIKSM-TQPITLPDGSEIITSLSIGVAIYPDHAQTPDELLQRADEAMYQ 408

Query: 247 AKKSGRNRVVCFSDIENNTC 266
           AKK        F   E  T 
Sbjct: 409 AKKG-------FRPCEQGTA 421


>gi|34498707|ref|NP_902922.1| hypothetical protein CV_3252 [Chromobacterium violaceum ATCC 12472]
 gi|34104558|gb|AAQ60916.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 573

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 61/178 (34%), Positives = 91/178 (51%), Gaps = 8/178 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++  E     + ++++SRID L+G+ N  AF       I+  G   E  +++ FDID+FK
Sbjct: 393 ALEHERQRLIDELTEMSRIDFLTGITNRRAFTQAAHAEIARAGLARESATLILFDIDHFK 452

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND +GH  GD V+  ++  +  V       GR GGEEF   A          LA  LR
Sbjct: 453 QVNDLYGHDCGDAVLVHVAAIVERVCREGDLAGRYGGEEFVVLACYRGASNGEALAERLR 512

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
             I  S   + SG  + +T S G+A      P +  ++  AD+ALY AK+ GRNRV+ 
Sbjct: 513 AAIAESPCLLPSGQKLAVTASFGVATLGEAAPSLERLLQAADRALYAAKRLGRNRVMV 570


>gi|24215628|ref|NP_713109.1| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
 gi|24196785|gb|AAN50127.1| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
          Length = 317

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 60/193 (31%), Positives = 89/193 (46%), Gaps = 20/193 (10%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
             +  +L  + +R+ + +  D L+ L N   F   L          +  LS++  D D+F
Sbjct: 125 SQLAVKLKETNDRLFEQASTDPLTKLKNRRMFNEELNNLIHACDKESHPLSLLMIDADHF 184

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND FGH  GDKV+  L+  L   F     + R GGEEF AA   +SE EA  +A  L
Sbjct: 185 KDYNDKFGHIAGDKVLVELASILTKTFRKKDVLARYGGEEFIAALPNTSEPEANQIAERL 244

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIST--------IIYRADQALYVAKKSG 251
            + +        S     +TIS GI          +        +I +AD+ALY +K SG
Sbjct: 245 VQTVREFSWEKRS-----VTISVGITTYNFNPTSKSINSEYLLNLIEQADKALYCSKVSG 299

Query: 252 RNRVVCFSDIENN 264
           R+R+  FS ++N 
Sbjct: 300 RDRITHFSWVQNK 312


>gi|229031170|ref|ZP_04187180.1| Sensory box/GGDEF [Bacillus cereus AH1271]
 gi|228730209|gb|EEL81179.1| Sensory box/GGDEF [Bacillus cereus AH1271]
          Length = 797

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 10/200 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           +++V I I       YI    +  +    + I+ L+  D ++G+ N   F   L    E+
Sbjct: 338 VTIVPIMIEGQTFGSYIMVKDITRMKQQQDEINYLAFHDTVTGIGNRIFFQQELDRSIER 397

Query: 129 -------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                    +++ D++ FK IND  GH +GDKV+  ++++        + + R+GG+EFA
Sbjct: 398 VQKTQDKFGLLYIDLNRFKNINDTLGHAIGDKVLKEVANRFRTCLPPTIHIARIGGDEFA 457

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRA 240
                 +EQ+   L   L +I E  +  + +  S ++++S GIA         +T++  A
Sbjct: 458 IIVHNKTEQQLLDLCGILFRITE--EPFVINQHSFYLSLSIGIALYPFGGTNATTLLQHA 515

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D A+Y AK+ G N V  + +
Sbjct: 516 DIAMYSAKEEGSNAVCIYDE 535


>gi|254483132|ref|ZP_05096366.1| cyclic diguanylate phosphodiesterase domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214036654|gb|EEB77327.1| cyclic diguanylate phosphodiesterase domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 570

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 82/202 (40%), Gaps = 30/202 (14%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L    +R+  L+  D L+ L N  +F   L         +    +++F D+D+FK+IND+
Sbjct: 108 LKRQEDRLRYLAYYDPLTSLPNRRSFNEQLNRILKRCRRHKTNAALLFIDLDHFKRINDS 167

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMF-------------------VGRLGGEEFAAAALG 186
            GH  GD+++  ++ +L V                          + RLGG+EF      
Sbjct: 168 IGHGRGDRLLVEIAKRLTVELREDDAINYYSDNSAEDDSNNSNTEIARLGGDEFTVVLSD 227

Query: 187 S-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
             +  +   +A  +   +    I + S   + +T S GIA      E   T++  AD A+
Sbjct: 228 IPNAGQVERVAQRILAALSE-PIALQSHNPV-VTPSVGIALFPQDGEDPDTLVRNADTAM 285

Query: 245 YVAKKSGRNRVVCFSDIENNTC 266
           Y AK  GR     + +  N   
Sbjct: 286 YAAKAQGRACFRFYDEEMNAKA 307


>gi|209547741|ref|YP_002279658.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209533497|gb|ACI53432.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 392

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 73/254 (28%), Positives = 114/254 (44%), Gaps = 14/254 (5%)

Query: 12  WLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL 71
           WL   +        T  +Y     S  +   + I++  L  +G  P         E+LSL
Sbjct: 139 WLARAEAPAPILGIT-ALYTLTGISFVLCAAVLISDGKL-VLGKAP-----SNWAEDLSL 191

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKL 129
            +  I     +G +S ++ +    + +R+   +  D L+GLLN  A     G+       
Sbjct: 192 AV-CIAGMTGIGALSLALHQWRLAARHRLE--AITDPLTGLLNRRALFDQYGTRPMGSTT 248

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++ FDID+FK +ND FGH  GD+VI   + +L           RLGGEEFA     +  
Sbjct: 249 AVIVFDIDHFKSVNDRFGHASGDRVIKAFAAELATHCRAGDIAARLGGEEFALVLKETMP 308

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAK 248
             A + A  +R+  E  +I I     +  T+S G+A    K      ++  AD+ALY AK
Sbjct: 309 GRAELAAERIRRAFEAREIEIDD-EVLTCTVSVGVAPGRAKSLDFDAMLSAADKALYAAK 367

Query: 249 KSGRNRVVCFSDIE 262
           + GRNRV     +E
Sbjct: 368 RGGRNRVELAGHLE 381


>gi|90418217|ref|ZP_01226129.1| conserved hypothetical membrane protein with GGDEF domain
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90337889|gb|EAS51540.1| conserved hypothetical membrane protein with GGDEF domain
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 390

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 110/230 (47%), Gaps = 11/230 (4%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           + + IA  +   +     +     +  E   +   S++ I + I+++    SG+ +  L 
Sbjct: 159 YGLLIAYGVMALSFAGRIVQGINAHTAETAHLVFDSVLQIHLLIAVIHTTASGAFV--LS 216

Query: 95  ISYNR----ISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFG 147
           ++Y R    +   +  D L+GL N  AF   L    +     ++V FD+D+FK IND +G
Sbjct: 217 VAYERMARDLRHAAMHDALTGLPNRRAFEQRLEKALQDRGHFALVVFDLDHFKSINDRYG 276

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+ +   +     V     FV R+GGEEFAA   G +  EA +L + +R  +  ++
Sbjct: 277 HAAGDEALRRCALLCPSVLRQQDFVARVGGEEFAAILPGVTPTEAFMLTDGVRSTVAATR 336

Query: 208 INISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
           I  +   S  +T+SAGIA     E     ++  AD  LY AK  GRNR+ 
Sbjct: 337 I-AADDVSFGLTLSAGIAHSAEGEASFDRLMRAADANLYRAKNGGRNRIA 385


>gi|254250546|ref|ZP_04943865.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
 gi|124879680|gb|EAY67036.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
          Length = 502

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 92/185 (49%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFD 135
           ++    L++ F     ++ L+R D L+GL N  A  ++L    E+L        S++F D
Sbjct: 312 WLLAFALRDNFRKQTLLTDLTRTDPLTGLRNRRALDTALADEWERLQRGSGGSLSVLFID 371

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
            D+FKQ ND  GH  GD  + FL++ +            R GGEEF A    + E  AA 
Sbjct: 372 ADHFKQYNDQHGHAQGDTALRFLAECIRAHTRRRGDLAARYGGEEFVAVLPDTDENGAAQ 431

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGR 252
           +A  +R+ +E +++   +      T+S G A   R     +  + ++AD ALY AK+ GR
Sbjct: 432 VAEAIRREVEGNRLVGFAETVPPFTVSIGCATGRRARHASMLALSHQADMALYRAKREGR 491

Query: 253 NRVVC 257
           NRV C
Sbjct: 492 NRVCC 496


>gi|330876267|gb|EGH10416.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 528

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 88/205 (42%), Gaps = 20/205 (9%)

Query: 81  LLGYISGSILKE---------LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124
           L+ +I   I  E         L      +  ++  D L+GL N   F             
Sbjct: 301 LIKHIHSRIRAEDQLLESQAALIQLNQHLEFIASEDKLTGLANRRRFDQFLDVEFKRARR 360

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAA 183
               LS++  D D+FK+ ND+FGH  GD+ +  L+  +      P     R GGEE A  
Sbjct: 361 ERNMLSLILMDADHFKRYNDHFGHLAGDECLVALARLVEQCIRRPGDVAARYGGEEIAVV 420

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRA 240
             G+ E  A  +A  + + I + QI   + P   +T+S G+A             +I  A
Sbjct: 421 LPGTDEASARQVAESILQAIRDEQITHPASPFGIVTVSLGVATVIGSNRQISQRGLIELA 480

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D+ALY AK  GRNRV   S+I  NT
Sbjct: 481 DRALYAAKSQGRNRVNVASEIALNT 505


>gi|308048690|ref|YP_003912256.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
 gi|307630880|gb|ADN75182.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
          Length = 530

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 91/200 (45%), Gaps = 12/200 (6%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------- 122
           S+V      +L +  +     +EL  +  ++ QL+  D L+ + N   F   L       
Sbjct: 318 SMVYQMRQRNLAIAALVERRTEELDEANRKLIQLTLTDSLTEVGNRRQFDQWLSSEWDAG 377

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFA 181
                 L+++  D+DYFK  NDN+GH  GDK +  ++  L          V R GGEEFA
Sbjct: 378 RRSGRPLTLMLVDVDYFKSFNDNYGHRAGDKALRCIAATLRERLHRPRDLVARYGGEEFA 437

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCH--KEPISTIIY 238
                +S+    +LA  L   +    I     G +  +T+S G+A      ++    ++ 
Sbjct: 438 ILLPETSDN-VPLLAQALCDAVAELGIRHECGGETGVVTVSIGVATLVPAVEQQAEHLVE 496

Query: 239 RADQALYVAKKSGRNRVVCF 258
            ADQALY AK  GRNRV+ +
Sbjct: 497 LADQALYRAKAEGRNRVISY 516


>gi|218463098|ref|ZP_03503189.1| hypothetical protein RetlK5_28330 [Rhizobium etli Kim 5]
          Length = 392

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 71/247 (28%), Positives = 112/247 (45%), Gaps = 14/247 (5%)

Query: 12  WLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL 71
           WL   +     +P   +   +++    I+ V+      L   G            E+LSL
Sbjct: 139 WLARAE-----APAPILGIAALYMLTAISFVLCAG--VLIADGKLVLGAAPNNWAEDLSL 191

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKL 129
            +  I     +G +S ++ +    + +R+   +  D L+GLLN  A     G+       
Sbjct: 192 AV-CIAGMTGIGALSLALHQWRLAARHRLE--AITDPLTGLLNRRAVFDQYGTRPMGSTA 248

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++ FDID+FK +ND +GH  GD+VI   +D+L           RLGGEEFA        
Sbjct: 249 AVIVFDIDHFKSVNDRYGHAAGDRVITVFADELTAHCRPGDTAARLGGEEFALVLKEIMP 308

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAK 248
             A + A  +R+  E  +I I  G  +  T+S G+A  R        ++  AD+ALY AK
Sbjct: 309 GRAELTAERIRRAFEAREIPI-DGDVLKCTVSVGVAPGRSTPLDFDAMLSAADKALYAAK 367

Query: 249 KSGRNRV 255
           + GRNRV
Sbjct: 368 RGGRNRV 374


>gi|254418028|ref|ZP_05031752.1| GGDEF domain protein [Brevundimonas sp. BAL3]
 gi|196184205|gb|EDX79181.1| GGDEF domain protein [Brevundimonas sp. BAL3]
          Length = 453

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 9/165 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++  D L+GL N       L +           ++++  DID+FK +ND FGH  GD+V
Sbjct: 286 EMAVTDALTGLHNRRYMTGQLRALVGRAAHGGATVAVLVLDIDHFKSVNDGFGHDAGDEV 345

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +A  + +L           R+GGEEF     G+S ++A I+A  +R+ I ++   +  G 
Sbjct: 346 LAEFAVRLATNVRAVDVPCRMGGEEFVVVMPGASLEDARIVAERIRRDIASAPFRVMGGK 405

Query: 215 S-IHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             + ITIS G+ A     +    ++ RAD+ +Y AK  GRN+V+ 
Sbjct: 406 ELLTITISIGVAATTGAGDTPEALLKRADEGVYEAKAGGRNKVIA 450


>gi|294141081|ref|YP_003557059.1| GGDEF domain-containing protein [Shewanella violacea DSS12]
 gi|293327550|dbj|BAJ02281.1| GGDEF domain protein [Shewanella violacea DSS12]
          Length = 376

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 10/202 (4%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           LV+N+  V++S         I    +  L      ++ ++  D L+ L N  +F   +  
Sbjct: 173 LVDNIEGVVLSNKQMQGSLNIMRDEVSSLKSEMENLNLVAMTDQLTSLNNRRSFEDEVMK 232

Query: 125 YNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
           + +K         ++  DID+FK+ ND  GH VGDKV+A+++  L  V     FV R GG
Sbjct: 233 HMQKYTQSQSPSCMLLIDIDHFKRFNDAHGHLVGDKVLAYVALALKQVVKGTDFVARYGG 292

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI---HITISAGIAERCHKEPIS 234
           EEF      +   +A ++A  LR  I   ++ +     +    IT+S G++     +   
Sbjct: 293 EEFVILLPNTQLTDALVVAEQLRTAISERKLTLGKDKKLSLGSITVSLGVSTLNIGDNRE 352

Query: 235 TIIYRADQALYVAKKSGRNRVV 256
           +   RAD+ALY AK SGRN V 
Sbjct: 353 SYFVRADEALYRAKSSGRNCVC 374


>gi|193215431|ref|YP_001996630.1| diguanylate cyclase/serine/threonine protein kinase [Chloroherpeton
           thalassium ATCC 35110]
 gi|193088908|gb|ACF14183.1| diguanylate cyclase and serine/threonine protein kinase with TPR
           repeats [Chloroherpeton thalassium ATCC 35110]
          Length = 611

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 8/178 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
             +L++L +    + + +R D L+GL N                 YN  L +   DID+F
Sbjct: 435 SQLLEQLRVQTIALEKQTREDPLTGLYNRRYLTFLLLQEFERAKRYNSALGVAMADIDHF 494

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND F H VGD+V+  ++   +        V R GGEEF      +   +A   +  +
Sbjct: 495 KNVNDTFSHQVGDEVLKIIAKIFIQNCRIIDTVARYGGEEFVFFFPETPLDKAVSASEKI 554

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           RK + N   N S    + +T+S G+           ++  AD+ LY AK +GRNRV  
Sbjct: 555 RKAVANYDWN-SVEKGLTVTVSIGVTANIDVPSHEKMLSLADEKLYEAKATGRNRVCY 611


>gi|118589104|ref|ZP_01546511.1| putative diguanylate cyclase (GGDEF) [Stappia aggregata IAM 12614]
 gi|118438433|gb|EAV45067.1| putative diguanylate cyclase (GGDEF) [Stappia aggregata IAM 12614]
          Length = 353

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 9/186 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           ++ L  S   I   S  D L+ L N   F +S+              S++  DID+FK+ 
Sbjct: 163 IENLQSSLEAIRYESLTDELTTLNNRKHFENSIERVIDHSKESGRGFSLLMTDIDHFKKF 222

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD+V+  ++  +           R GGEEFA     +  ++AA++  ++R  
Sbjct: 223 NDTYGHQTGDQVLRLVALAVKQNIKAQDIACRYGGEEFAIILPHAELEDAAVIGENIRNA 282

Query: 203 IENSQ-INISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + + + +  S+G ++  +TIS GIA     +   +I+ RAD+ALY+AK +GRN V    +
Sbjct: 283 VMSKELVKRSTGENLGRVTISVGIATFESTDTAHSIVSRADEALYLAKNAGRNVVKTERE 342

Query: 261 IENNTC 266
           +E    
Sbjct: 343 LEGTQA 348


>gi|94967235|ref|YP_589283.1| diguanylate cyclase [Candidatus Koribacter versatilis Ellin345]
 gi|94549285|gb|ABF39209.1| diguanylate cyclase [Candidatus Koribacter versatilis Ellin345]
          Length = 453

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 73/270 (27%), Positives = 118/270 (43%), Gaps = 46/270 (17%)

Query: 32  SIFFSIFIATVIFIANIFL-FYIGLTPFYGLEYILVENLSLVIISITISLLL------GY 84
           ++   I IA++ + A   + F  G T F  +  + V ++  + I +   ++L       Y
Sbjct: 180 AVLMGIGIASMHYTAMFAVTFERGNTEFSTVHTVPVTHIDQLGIVVMAGMVLFGALISAY 239

Query: 85  ISGSILKELFISYNRI---------------------SQLSRIDCLSGLLNHSAFI---- 119
               + ++L +S  R+                      +LS  D L+GL N   F     
Sbjct: 240 FDRQMSRDLRVSNERLAEMQVALLQREKELKEAVAKLEELSTRDGLTGLYNRRFFDTTLT 299

Query: 120 ---SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRL 175
                    N  +S++  D+D FK +ND++GH VGD  +  +   L   V  T   V R 
Sbjct: 300 AECKRAARANYPISLLIIDVDCFKALNDHYGHLVGDDCLQKVGKSLASAVRRTSDVVARY 359

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEP-- 232
           GGEEFA     +SE+ A  +  ++R+ +   +I N +S     +T+S G+  R    P  
Sbjct: 360 GGEEFALILPNTSEESATTIGENIRRAVLGLEIANANSTAGPFVTLSVGVCTRRPSHPRS 419

Query: 233 -------ISTIIYRADQALYVAKKSGRNRV 255
                   + II  AD+ALY AK+ GRNRV
Sbjct: 420 SEDILVTTNEIIRAADEALYRAKREGRNRV 449


>gi|90022874|ref|YP_528701.1| hypothetical protein Sde_3232 [Saccharophagus degradans 2-40]
 gi|89952474|gb|ABD82489.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 498

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 14/193 (7%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLS 130
           + LL+G ++  I   +     ++  L+  D L+   N  A    L           + L 
Sbjct: 305 LQLLVGKLAA-IQGAIEDKNRKLEYLASRDPLTDCYNRRAMRERLDDEFAKAQNSGKDLV 363

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
            +  DID+FK++ND +GH VGD VI  ++  +         V R GGEEF      ++ +
Sbjct: 364 CIMLDIDHFKRVNDTYGHGVGDVVIKMVAQVVKEAVRDSDIVARFGGEEFCVVLPNATVE 423

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
           +  I+A   R  IE       +   + +T S GIA      +  + +I++AD+ALY +K+
Sbjct: 424 QVKIIAKRCRMTIETQ-----NCGGVKVTSSFGIAALSLGAKSPNDLIHQADEALYNSKQ 478

Query: 250 SGRNRVVCFSDIE 262
           +GRN V  +    
Sbjct: 479 NGRNMVSVWQPSM 491


>gi|331007307|ref|ZP_08330506.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [gamma proteobacterium IMCC1989]
 gi|330418869|gb|EGG93336.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [gamma proteobacterium IMCC1989]
          Length = 712

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 12/188 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S+ K L      +  ++  D L+ L N +     L             +++ F D+D FK
Sbjct: 247 SVNKALEDVNAELKSIAHYDALTHLPNRTLLADRLRQSILQKKRNGRSIAVAFLDLDGFK 306

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           ++ND FGH  GD ++  +++ +         + R+GG+EF        + +E   L   L
Sbjct: 307 EVNDTFGHDAGDDLLIHIANNMKETLREVDTLARIGGDEFVVLLDDLVNPKECEFLLQGL 366

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
            K +   +  I     + I+ S G+            ++  +DQA+Y AK+SG+N    F
Sbjct: 367 LKTV--VKPFILGTNKVQISASIGVTIYPQDGVDAEQLLRHSDQAMYRAKQSGKNCFHLF 424

Query: 259 SDIENNTC 266
            D+E +  
Sbjct: 425 -DVEQDVA 431


>gi|251773316|gb|EES53865.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptospirillum ferrodiazotrophum]
          Length = 860

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 12/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
             L E     N++  L+  D L+GL N    I  L           + L+++F D+D FK
Sbjct: 415 RDLTERKTFENQLLYLANYDALTGLPNRIHLIERLKQAIPLAERNGQHLALLFLDLDRFK 474

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            +ND+ GH  GD ++  +S +L         V R GG+EF     G  E ++A  +A  +
Sbjct: 475 GVNDSLGHASGDLLLVEVSKRLSNCVRKGDTVARFGGDEFVFLLEGLEEREDAKPIAEKI 534

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
              + N+   I     + +  S GI+   H  E    ++ RAD A+Y AK+ G N    +
Sbjct: 535 LGAL-NAPFEI-DNVQVFMNGSIGISTWPHDGESSDLLLRRADAAMYRAKELG-NSYAFY 591

Query: 259 S 259
           +
Sbjct: 592 N 592


>gi|146283071|ref|YP_001173224.1| sensory box protein [Pseudomonas stutzeri A1501]
 gi|145571276|gb|ABP80382.1| sensory box protein [Pseudomonas stutzeri A1501]
          Length = 474

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 92/185 (49%), Gaps = 14/185 (7%)

Query: 81  LLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSI 131
           LL ++S  ++   E    Y R+ ++++ D L+GL N + F   L            ++++
Sbjct: 287 LLQFVSTQVVTAIERKQLYARLERMAQYDELTGLPNRACFRDRLSTALARVRRNGGRIAL 346

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQ 190
           ++ D+D FKQ+ND +GH  GD+++  ++++L         V RLGG+EF          +
Sbjct: 347 LYLDLDQFKQVNDTYGHGGGDQLLQTVAERLGGCVRDTDTVARLGGDEFVVLLESIIDAE 406

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKK 249
           +A  +   +R   E       +G S+ I +S GIA       +   ++ +AD+ +Y+ K 
Sbjct: 407 DAQRVVAKIRDAFEAPLP--IAGHSLEIGMSIGIALYPEDGEVEAQLLKQADERMYLMK- 463

Query: 250 SGRNR 254
           SGR +
Sbjct: 464 SGRGQ 468


>gi|53805133|ref|YP_113023.1| GGDEF domain-containing protein [Methylococcus capsulatus str.
           Bath]
 gi|53758894|gb|AAU93185.1| GGDEF domain protein [Methylococcus capsulatus str. Bath]
          Length = 385

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 59/235 (25%), Positives = 109/235 (46%), Gaps = 18/235 (7%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL---SLVIISITISLLLGYISGSIL 90
           F ++ I+ V+ I  +    +     + ++   V+ L   ++++ ++  SL  G I    L
Sbjct: 157 FLALAISMVLAIRAVSPLILDSPIVHPMDENWVQQLTYSAILVGNVLGSLCFGLIVAEEL 216

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
                    + QL+  D L+ + N   F +          +    +S++  DID+FKQ+N
Sbjct: 217 ------NAELHQLASFDSLTRIYNRRVFENLATDELLRARTKRVPVSLLMIDIDHFKQVN 270

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD  +  +++ +         + R GGEEF      ++  +A  +A  LR   
Sbjct: 271 DRHGHAAGDAALVRVAETMEESLRHRDLLCRYGGEEFGVLLPATARAQALRIAERLRLAT 330

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVC 257
            ++   +  G +I +T+S G+A         +++   AD+ALYVAK++GRNRV  
Sbjct: 331 MHAGF-LYGGEAIPLTVSIGVACIEGPPYDLSLLKHDADRALYVAKQAGRNRVAV 384


>gi|89096893|ref|ZP_01169784.1| hypothetical protein B14911_18350 [Bacillus sp. NRRL B-14911]
 gi|89088273|gb|EAR67383.1| hypothetical protein B14911_18350 [Bacillus sp. NRRL B-14911]
          Length = 744

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/181 (30%), Positives = 85/181 (46%), Gaps = 9/181 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG----SYNEKLSIVFFDIDYFK 140
           + G  + E   S   +  ++  D L+GL N +  +  L     S  EK +++F D+D FK
Sbjct: 304 VIGRDITERKKSERTMEYMAFYDTLTGLPNRNEIMKQLQGILNSGKEKAAVLFLDLDRFK 363

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH  GD ++     +L    G+   V R GG+EF        +Q+    A   R
Sbjct: 364 IINDTKGHSTGDLLLKKAGIRLEDTVGSLGLVARQGGDEFIILFEEKEKQQIEGAA---R 420

Query: 201 KIIENS-QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            IIE   +  I  G   +IT S GI+    H     T+I  AD A+Y+AK+ G+N    +
Sbjct: 421 AIIEQFNKPFILEGEEFYITPSIGISLYPEHGTDQETLIKHADTAMYLAKERGKNNFQFY 480

Query: 259 S 259
           +
Sbjct: 481 T 481


>gi|241763102|ref|ZP_04761162.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
 gi|241367727|gb|EER61981.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
          Length = 812

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 10/184 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFK 140
             L     +  RI +L+  D L+GL N                + +   +I+F D+D FK
Sbjct: 359 RDLTLQHAAQKRIEELAYSDVLTGLPNRLLLTQRVDTAIQGARATDTGFAILFLDLDRFK 418

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND+ GHP GD+V+  ++++L         + RLGG+EF     G+    A  +A  + 
Sbjct: 419 IINDSLGHPFGDRVLQLVAERLQACLRQTDMLCRLGGDEFVIYLHGADAVVAESVARRIL 478

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              +  +  +  G    I  S G+A      E +  +I +AD A+Y  K+ GR     + 
Sbjct: 479 D--DMLRPFLLDGMGFSIQCSIGMALYPQDGEGLDDLIKQADTAMYRVKERGRGSYGFYQ 536

Query: 260 DIEN 263
              N
Sbjct: 537 PQMN 540


>gi|295676981|ref|YP_003605505.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia sp. CCGE1002]
 gi|295436824|gb|ADG15994.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia sp. CCGE1002]
          Length = 771

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 89/195 (45%), Gaps = 16/195 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------------LSI 131
            IS S +  +  +  ++  L+  D L+GL N +     +                  +++
Sbjct: 313 LISFSDIGPVREAQRQLKYLATRDSLTGLYNRAYLTERMRDLFAPRASGDHGGELASVAV 372

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQ 190
           +F D+D FK++ND  GH  GD ++  ++++L    G    + R+GG+EF   A    +  
Sbjct: 373 LFVDLDGFKKVNDTAGHEAGDTLLCSVAERLSACVGRSDTLARVGGDEFVIVASAYGNTG 432

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
           +   LA+ +  +I        +G   ++  S GI+      + ++T++  AD A+Y AK+
Sbjct: 433 QLIALAHRVLDLIAV--PFAVAGNEYYLGASIGISLFPEDGQDVATLMRNADSAMYHAKQ 490

Query: 250 SGRNRVVCFSDIENN 264
            GRN    F+   N 
Sbjct: 491 RGRNNFQFFTAELNQ 505


>gi|90424196|ref|YP_532566.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
 gi|90106210|gb|ABD88247.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
          Length = 410

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 109/235 (46%), Gaps = 19/235 (8%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISI-TISLLLGYISG 87
           I   +     +   I +A+  L      P     ++ +  + LV+ ++ T+ ++   +S 
Sbjct: 151 ILVPLLHGGVLMAPILLAD--LLTPAGRPITSNVWVTIFAIELVLYAVGTVFVIFMLVSE 208

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
             ++    +       + ID L+G+ N   F       I+        ++++ FDID+FK
Sbjct: 209 RTVRAHKTA-------AAIDPLTGMFNRRGFSEATTRMIAREADAGRPVTVMIFDIDFFK 261

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND FGHP GD+++   +  +          GR+GGEEFAA     S  EA + A  +R
Sbjct: 262 SINDRFGHPAGDELLKLFATLVTNTLRISDLSGRIGGEEFAALLP-CSMDEALVAAERVR 320

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  E   I +   P +  T+S G+A    +  +  ++  AD ALY AK+ GRNRV
Sbjct: 321 EAFETCGIVVDDAP-VETTVSIGVAGGPPRTELEVLLAAADTALYQAKRGGRNRV 374


>gi|319956972|ref|YP_004168235.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Nitratifractor salsuginis DSM 16511]
 gi|319419376|gb|ADV46486.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitratifractor salsuginis DSM 16511]
          Length = 747

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 19/191 (9%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + + EL  S  ++   +  D L+ L N +     L        S   + ++ F D+D FK
Sbjct: 300 TDISELQRSREKLRYTATHDILTRLPNRALLFERLDEVLNQSQSNGSEGALFFIDLDNFK 359

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAIL 195
            IND  GH VGDKV+    ++++ V       GRLGG+EF        + +     A  +
Sbjct: 360 IINDTVGHAVGDKVLVECVERIMRVIRREDIFGRLGGDEFLLIVENIKDHDVPMYLAQKI 419

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
             ++RK +E        G    I+ S GIA           +I  AD A+Y AK+ G+NR
Sbjct: 420 LEEIRKPME------FEGERFEISASIGIAVFPKDSLEREELIRFADMAMYRAKQEGKNR 473

Query: 255 VVCFSDIENNT 265
              +S   +  
Sbjct: 474 FCYYSTKMDQA 484


>gi|264676521|ref|YP_003276427.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262207033|gb|ACY31131.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 473

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 113/242 (46%), Gaps = 18/242 (7%)

Query: 28  MIYFSIFFSIFIATVIF----IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           +I+ ++ + IF  T+I     +++I    +G   F    ++   +  + +  + +  L  
Sbjct: 231 LIWCALSYRIFSLTLITATLCLSSIIFISLGTLEFTPAHFLETLSFRMGLCMLVLGPLAV 290

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDI 136
             S     EL     ++S     D L+ +L   AF+              +  +I+  D+
Sbjct: 291 AGSHMARNELM---QKLSHAVNHDFLTDMLARGAFMKQGQRILERCRQDGQPFAILMLDL 347

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FKQIND+FGH  GD+++   S  L  V      VGR+GGEEFA A        A  +A
Sbjct: 348 DHFKQINDSFGHAGGDQLLRSFSQTLSQVLRAQDIVGRMGGEEFAVALPKVDASAAQEIA 407

Query: 197 NDLRKIIENSQINISSGPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRN 253
             + + I   ++ ++   ++  T+S G+         + +  ++ +ADQALY AK +GRN
Sbjct: 408 KRINRAIRELRVPMND-KTMSATVSIGLVHTTSLQAHQSLDMLLLQADQALYEAKAAGRN 466

Query: 254 RV 255
           RV
Sbjct: 467 RV 468


>gi|254458010|ref|ZP_05071437.1| GGDEF domain protein [Campylobacterales bacterium GD 1]
 gi|207085403|gb|EDZ62688.1| GGDEF domain protein [Campylobacterales bacterium GD 1]
          Length = 648

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 9/174 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           +         + ++SR D L+G+ N   F   L     +       +S++  DID FK I
Sbjct: 473 INRRKTVEEELRKISRTDALTGIWNRRYFFEMLDREISRSQRYDINMSLLMIDIDLFKNI 532

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRK 201
           ND +GH +GDK I  + + +           RLGGEEF    + +        ++  +RK
Sbjct: 533 NDTWGHDIGDKAIKHVVNIINSNVRKENIFSRLGGEEFGIILIETKVPYTPQSISERIRK 592

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            IE   + I    SI IT+S GIA   + +  +T+  R+D+ALY+AK++GRNRV
Sbjct: 593 SIEAVPL-IIDEKSIKITVSIGIANIMNNDTANTLYVRSDRALYLAKENGRNRV 645


>gi|312142851|ref|YP_003994297.1| diguanylate cyclase [Halanaerobium sp. 'sapolanicus']
 gi|311903502|gb|ADQ13943.1| diguanylate cyclase [Halanaerobium sp. 'sapolanicus']
          Length = 442

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 97/178 (54%), Gaps = 11/178 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           S  ++ +L     +I+++S  D + G+ N S FI+ L         Y+  LS++ +DID 
Sbjct: 267 SNEVITDLENKVAKITKISETDDMLGIYNRSKFINILEKEIYRSRRYDNDLSLIMYDIDC 326

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+INDN+GH VGD+++  ++  +         + R GG+EF      +S +++  LA  
Sbjct: 327 FKEINDNYGHQVGDEILIKVTKMIKDQIRKIDSLARYGGDEFMIINPETSLEKSYQLAER 386

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           LRK +      I +     I+ S G+ E   ++ I +++ RAD ALY AK++GRN+V 
Sbjct: 387 LRKEVSK----IETEKVASISCSFGVVELEAEDDIDSLLKRADDALYQAKENGRNKVC 440


>gi|261251227|ref|ZP_05943801.1| sensory box/GGDEF family protein [Vibrio orientalis CIP 102891]
 gi|260938100|gb|EEX94088.1| sensory box/GGDEF family protein [Vibrio orientalis CIP 102891]
          Length = 633

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 60/189 (31%), Positives = 94/189 (49%), Gaps = 18/189 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIV-FFDI 136
           S   +       NR+  LS  D ++ L N   F S + ++        N+ +S++   DI
Sbjct: 452 SFVDISHRKELENRLRDLSEKDSMTSLWNRRKFDSEMQAHSARTKRYTNQAVSVLALIDI 511

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK++ND +GH  GD VI  ++  L         V R+GGEEFA     +  +EA ++ 
Sbjct: 512 DHFKRVNDRYGHDKGDAVIRQVAKSLEKQLRETDLVARIGGEEFALILPHTDLREAEVVL 571

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           N +R       + +S    ++IT+SAG+ E C  +       RAD ALY +K  GRN+V 
Sbjct: 572 NRIR-------VAVSLESELNITVSAGLTEICSHQD--ETYKRADIALYESKSLGRNKVS 622

Query: 257 CFSDIENNT 265
             S  EN++
Sbjct: 623 ILSMTENDS 631


>gi|91791772|ref|YP_561423.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91713774|gb|ABE53700.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           denitrificans OS217]
          Length = 873

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 50/193 (25%), Positives = 87/193 (45%), Gaps = 18/193 (9%)

Query: 82  LGYISGSILKELFISYN---RISQLSRIDCLSGLLNHSAFISSL-------GSYNE-KLS 130
           L  ++ ++ +E+        ++   ++ D L+GL N S F+  L         +   + +
Sbjct: 423 LAELNDNLQEEIMQRRKIEAQLQHDAKHDGLTGLPNRSFFMERLSYAIKHGRRHGHDQFA 482

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SE 189
           ++F D+D FKQIND FGH  GDK +   + +L         + RLGG+EF          
Sbjct: 483 LLFIDLDRFKQINDTFGHLEGDKFLIETARRLKSCIRENDALARLGGDEFVILLDSIQGT 542

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHIT-ISAGIAERCH--KEPISTIIYRADQALYV 246
           Q+A  +++ +   +         G    I+  S GIA   H  ++   +++  AD A+Y 
Sbjct: 543 QDALDVSDRILYQVSQ---PYKLGKQDFISGASIGIAFSGHHKEDTSESLLKSADAAMYQ 599

Query: 247 AKKSGRNRVVCFS 259
           AK  G+   V F 
Sbjct: 600 AKSKGKGCYVIFD 612


>gi|21230751|ref|NP_636668.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66769252|ref|YP_244014.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188992403|ref|YP_001904413.1| Putative sensor protein [Xanthomonas campestris pv. campestris str.
           B100]
 gi|21112346|gb|AAM40592.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574584|gb|AAY49994.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167734163|emb|CAP52371.1| Putative sensor protein [Xanthomonas campestris pv. campestris]
          Length = 578

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 8/170 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNF 146
                 + + S  D L+GL N      +L          +  LS++  D+D+FKQ ND  
Sbjct: 389 LRLRESLRRQSIRDALTGLYNRRYLEEALSHELARCARRDLPLSVLMLDVDHFKQFNDGQ 448

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD ++A + + L+          R GGEEF      +  +EA  +A  +R  I   
Sbjct: 449 GHAGGDLLLAAVGELLLTRLRAEDVACRYGGEEFTVILPETDGEEAMRVAEQIRGHIAAL 508

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
            ++        +T S G+A      E  S +I +AD ALYVAK+ GRNRV
Sbjct: 509 AVSDGQRALPRVTASIGVASFPADGELGSALIQKADAALYVAKRQGRNRV 558


>gi|300312026|ref|YP_003776118.1| signal transduction protein containing a membrane domain, an EAL
           and a GGDEF domain-containing protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074811|gb|ADJ64210.1| signal transduction protein containing a membrane domain, an EAL
           and a GGDEF domain protein [Herbaspirillum seropedicae
           SmR1]
          Length = 1106

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 11/186 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYF 139
            S+  E   +  RI  L+  D L+GL N        S  I+     N  ++++  D+D F
Sbjct: 653 ASVAIESRRADERIRHLAHYDELTGLPNRFLCTQHVSNAITHAEHRNGMVAVILMDLDRF 712

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND FGH  G+ V+  ++ +          + R+GG+EF          +   L    
Sbjct: 713 KNINDTFGHETGEAVLQEIAQRFRNSLRELDILARVGGDEFIVLV--DDFDDPVQLGEIA 770

Query: 200 RKII-ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +K++ E  +  I  G    +++S GIA      +   T+I  AD A+Y AK  G++    
Sbjct: 771 QKLLTEARKPFIIDGQEAMLSVSIGIATYPGDGDNAQTLIKNADIAMYRAKHHGKDDYRF 830

Query: 258 FSDIEN 263
           FSD  N
Sbjct: 831 FSDEIN 836


>gi|237731656|ref|ZP_04562137.1| sensory box-containing diguanylate cyclase [Citrobacter sp. 30_2]
 gi|226907195|gb|EEH93113.1| sensory box-containing diguanylate cyclase [Citrobacter sp. 30_2]
          Length = 410

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 73/174 (41%), Gaps = 11/174 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
            + E       + + +  D L+GLLN   F            S  +  S++  D D FK 
Sbjct: 238 DITEQKRLEQELERAALRDALTGLLNRRHFYQVTEPEQTHAMSLTQDYSLLLIDTDRFKS 297

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH  GD+V+  L+  L         + R GGEEF      +S   A  LA  +R 
Sbjct: 298 INDLFGHLKGDEVLCALARTLESCARKDDLIFRWGGEEFVLLLPRTSLDIALNLAEVIRA 357

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +    +          T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 358 TVAKVTLPGLP----RFTVSIGVARHETNESIDELFKRVDDALYKAKNEGRNRV 407


>gi|330808279|ref|YP_004352741.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376387|gb|AEA67737.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 819

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 94/211 (44%), Gaps = 18/211 (8%)

Query: 65  LVENLSLVIISITI----SLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNH 115
           L++ L    +S+T+        G +SG++L    ++  R     +S  +  D L+GL N 
Sbjct: 326 LIQRLDGSTVSVTLVGAPIRHAGKVSGAVLVLHDMTQERQYIANLSWQATHDALTGLANR 385

Query: 116 SAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
             F   L      L       +++F D+D FK +ND  GH  GD+++  +   L      
Sbjct: 386 REFEYRLEQALHNLTRQVGRHALMFLDLDQFKLVNDTCGHAAGDELLRHICALLQSGLRE 445

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
              + RLGG+EF       S + A  +A  LR+ ++N    +  G     T+S G+    
Sbjct: 446 NDTLARLGGDEFGILLENCSPEAAEKIAEGLRQTVQNLHF-VWKGRPFVTTVSIGLVHIA 504

Query: 229 H-KEPISTIIYRADQALYVAKKSGRNRVVCF 258
                +   +  AD A Y+AK+ GRNRV  +
Sbjct: 505 QTPTTLEASLRAADMACYMAKEKGRNRVQVY 535


>gi|313683101|ref|YP_004060839.1| response regulator receiver modulated diguanylate cyclase
           [Sulfuricurvum kujiense DSM 16994]
 gi|313155961|gb|ADR34639.1| response regulator receiver modulated diguanylate cyclase
           [Sulfuricurvum kujiense DSM 16994]
          Length = 412

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 87/173 (50%), Gaps = 8/173 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           E   +   I+  +  D L+GL N   F +++  Y        E+  +   DID+FK+IND
Sbjct: 241 EALENIETITNYASRDFLTGLYNRRYFFNTIEPYFSNAVDSEEEFVVAMVDIDHFKKIND 300

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGDK I  LS+ L         V R GGEEF      ++ + A  +   +R+ + 
Sbjct: 301 TYGHDVGDKAIIHLSEILRSGVQHQDVVARFGGEEFCIVLKNTTRENAIGVLERIRQQVS 360

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            S + I++   +  TIS G A   H++ ++  I  AD  LY AK +GRN+VV 
Sbjct: 361 LSPLMIANQSEVSFTISIG-AALEHEDTLTDTINEADAKLYQAKSTGRNKVVF 412


>gi|302187253|ref|ZP_07263926.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 763

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 10/183 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSY---NEKLSIVFFDIDYF 139
            ++L +L  +   + Q++  D L+ L+N   F       L  +   N  L+++F DID+F
Sbjct: 273 NALLTQLDQARVSLQQVAHYDPLTNLINRRGFNQIFAEKLQEHTYNNGMLAVMFLDIDHF 332

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND+ GH  GD ++  +++++         V R GG+EF         +EA  LA+ +
Sbjct: 333 KRINDSLGHDAGDDLLKVIAERIRNATRAQDVVARFGGDEFCILLSIPDYEEARHLAHRV 392

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + ++ +     +G  + +T S GIA           ++  AD ALY +K+ GRN V  F
Sbjct: 393 MQKMKETI--ALAGRRMVMTTSIGIAVFPRDGSTCDELLKHADLALYQSKEKGRNGVNFF 450

Query: 259 SDI 261
           +  
Sbjct: 451 NPA 453


>gi|108798585|ref|YP_638782.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. MCS]
 gi|119867685|ref|YP_937637.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. KMS]
 gi|126434184|ref|YP_001069875.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. JLS]
 gi|108769004|gb|ABG07726.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. MCS]
 gi|119693774|gb|ABL90847.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. KMS]
 gi|126233984|gb|ABN97384.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. JLS]
          Length = 781

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 106/231 (45%), Gaps = 9/231 (3%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK-E 92
           +   F+  + F+  I L    L     +  +++    ++I  +T   ++   +  ++  +
Sbjct: 289 WLQAFLPYIGFLCIIGLLSYHLLIGRDMPKLVIAVAVVMIALVTARQVVAMRAQRLVTNQ 348

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPV 150
           L+ +  R++     D L+GL N   F   L    ++ K  ++F DID FK++ND FGH  
Sbjct: 349 LYEAQRRLAHQVHHDPLTGLPNRVLFAKRLDEAMHDGKFVLIFVDIDDFKEVNDQFGHAA 408

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD ++  + ++L    G    + R+GG+EFA    G       ++A+ LR  +       
Sbjct: 409 GDDLLCAVGERLRRCVGPSDTLARIGGDEFAILVEGEH-DAPEVVADKLR--VALRDPFA 465

Query: 211 SSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCF 258
             G S+ +  S G+      EP      ++ +AD ++Y  K+ G++  V +
Sbjct: 466 VHGSSVRVRASMGLVRPSVDEPNPTSDDLLRQADISMYAGKRLGKDTAVVY 516


>gi|313500073|gb|ADR61439.1| Sensory box protein/GGDEF family protein [Pseudomonas putida
           BIRD-1]
          Length = 818

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/214 (26%), Positives = 97/214 (45%), Gaps = 18/214 (8%)

Query: 62  EYILVENL--SLVIISITISLLL--GYISGSILKELFISYNR-----ISQLSRIDCLSGL 112
              L++ L  S V I++  S +L  G +SG +L    ++  R     +S  +  D L+GL
Sbjct: 323 HARLIQRLDGSTVSINLVGSPILNDGQVSGIVLVLHDMTQERQYIANLSWQATHDALTGL 382

Query: 113 LNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N   F       ++ L     + S++F D+D FK +ND  GH  GD+++  +   L   
Sbjct: 383 ANRREFEYRLEQALNDLARQAGRHSLMFLDLDQFKLVNDTCGHAAGDELLRHICAVLQSG 442

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                 + RLGG+EF          +A  +   LR+++++    +  G     T+S G+ 
Sbjct: 443 LREGDTLARLGGDEFGVLLENCPPDQAERIGEQLRQMVQSLHF-VWKGRPFVTTVSIGLV 501

Query: 226 ERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
                   +   +  AD A Y+AK+ GRNRV  +
Sbjct: 502 HMAQAPGTLEASLRAADMACYMAKEKGRNRVQVY 535


>gi|313682364|ref|YP_004060102.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
 gi|313155224|gb|ADR33902.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
          Length = 780

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 83/191 (43%), Gaps = 15/191 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + E   +  +I   +  D L+ + N +     +         Y   ++I+F D+D+FK
Sbjct: 323 SDITERMNAEEKIKHQAYFDALTNIPNRALLKDRVDQSLAHYRRYGSLIAIMFLDLDHFK 382

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA------LGSSEQEAAI 194
            IND+ GH +GD ++   +++L  +      V RLGG+EF             +   A  
Sbjct: 383 SINDSLGHYIGDLLLIETANRLKHICREGDTVARLGGDEFIILLNELGNDPMVAATRAET 442

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
           +A  + ++  ++  +I     I  + S GI       +    ++  AD A+Y AKK GRN
Sbjct: 443 VAEKIHEVF-SAPFDIGLAEPISTSSSIGIVLVSSKDQTSDDLLKFADTAMYQAKKEGRN 501

Query: 254 RVVCFSDIENN 264
               + +  + 
Sbjct: 502 TTRFYQEEMDQ 512


>gi|220936132|ref|YP_002515031.1| diguanylate cyclase/phosphodiesterase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219997442|gb|ACL74044.1| diguanylate cyclase/phosphodiesterase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 761

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 106/266 (39%), Gaps = 31/266 (11%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           ++ WL     +    P         +  + +A ++ +    L  IGL  F   + I    
Sbjct: 255 MNRWLGDTGEMPRQLP--------GWHPVILAGIVLLT---LLVIGLALFLR-QQIRHHT 302

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------ 122
            +L   S  +           ++E   +  R+++L+  D L+ L N + F   L      
Sbjct: 303 RALRAQSEAL--------AQEVREREQAQERLNELAYSDSLTHLPNRTLFQDRLHQAMEY 354

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              +   ++++F D+D FK++ND+ GH  GD+++  ++ +   V      + RLGG+EF 
Sbjct: 355 AKRHERLIALLFIDLDDFKRVNDSLGHAAGDRLLQEIARRFGRVLRETDTLARLGGDEFT 414

Query: 182 AAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYR 239
                    ++A      L   +      +    SI ++ S GI      +     ++  
Sbjct: 415 VILTDIQRPEDAVTFVRKLLDTLRA--PFMLGEQSITMSASIGITLYPSDDTAEADLLKD 472

Query: 240 ADQALYVAKKSGRNRVVCFSDIENNT 265
           AD A+Y AK  G+N    ++     +
Sbjct: 473 ADTAMYQAKSRGKNTFDFYAPELTQS 498


>gi|45657013|ref|YP_001099.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|45600250|gb|AAS69736.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 317

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 60/193 (31%), Positives = 89/193 (46%), Gaps = 20/193 (10%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
             +  +L  + +R+ + +  D L+ L N   F   L          +  LS++  D D+F
Sbjct: 125 SQLAVKLKETNDRLFEQASTDPLTKLKNRRMFNEELNNLIHACDKESHPLSLLMIDADHF 184

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND FGH  GDKV+  L+  L   F     + R GGEEF AA   +SE EA  +A  L
Sbjct: 185 KDYNDKFGHIAGDKVLVELASILTKTFRKKDVLARYGGEEFIAALPNTSEPEANQIAERL 244

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIST--------IIYRADQALYVAKKSG 251
            + +        S     +TIS GI          +        +I +AD+ALY +K SG
Sbjct: 245 VQTVREFSWEKRS-----VTISVGITTYNFNPTSKSINSEYLLNLIEQADKALYCSKVSG 299

Query: 252 RNRVVCFSDIENN 264
           R+R+  FS ++N 
Sbjct: 300 RDRITHFSWVQNK 312


>gi|318041721|ref|ZP_07973677.1| diguanylate cyclase with PAS/PAC sensor [Synechococcus sp. CB0101]
          Length = 656

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 14/174 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             + E +    ++  L+  D L+GL N +  I  L             + ++F D+D FK
Sbjct: 470 RDVSERYTQQEQMRHLATHDPLTGLANRALLIEELNLSLALAKRQGHGVGLLFLDLDAFK 529

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
            +ND +GH  GD ++  +  +L         V R GG+EF      + S ++  ++A+ L
Sbjct: 530 PVNDRYGHGTGDVLLQAVGQRLKSCVRESDTVCRQGGDEFVLLIPDAPSLEQLQLIASKL 589

Query: 200 RKIIENS---QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
            + ++     Q  +  G  I I+ S G+A    H +    ++  AD A+Y AK+
Sbjct: 590 NQALQQPFDDQPELPEG--IRISASIGVARWPDHADDADGLLEAADTAMYRAKQ 641


>gi|315619770|gb|EFV00289.1| diguanylate cyclase domain protein [Escherichia coli 3431]
          Length = 388

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 121/237 (51%), Gaps = 19/237 (8%)

Query: 30  YFSIFFSIFIATVIFIAN--IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           Y  I+  I + +++ + N  I L++I  +      + + + L L+ +   IS L+ Y+  
Sbjct: 163 YSKIWLCIILISIVSVCNNLILLYFIDKS---HPAWYMTKFLELISMIYIISTLMYYV-- 217

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQINDN 145
                 F   N  + ++  D L+   N   FI SL   S +   S++  DID FK IND 
Sbjct: 218 ------FRKLNHANHMAIHDPLTNTYNRRYFIDSLKNISKHHDFSVIMLDIDSFKSINDK 271

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH +GD+VI  ++  +         +GRLGGEEF     G++++    +A  +RK IE 
Sbjct: 272 WGHHMGDQVIVMVTRIIKKSIRKEDILGRLGGEEFGIIIKGNTQKLLLSIAERIRKNIEE 331

Query: 206 --SQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             S+  +S GP   IT+S G    + +    S ++  AD+ALY AK++G+N+V+  S
Sbjct: 332 QCSEKLLSHGPE-KITVSIGCFTSKENNLSPSEMLVNADKALYQAKRTGKNKVIIHS 387


>gi|302878764|ref|YP_003847328.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Gallionella capsiferriformans ES-2]
 gi|302581553|gb|ADL55564.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Gallionella capsiferriformans ES-2]
          Length = 852

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 11/188 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFF 134
           L         +L  +      LS  D L+GL N   F   L            + +++F 
Sbjct: 385 LALAVHDRESQLQQARKEQEYLSDHDALTGLPNRRHFSKRLEHALDSTRENRAQFAVMFL 444

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK +ND  GH +GD+++  ++++LV   G+   + R+GG+EF     G    +   
Sbjct: 445 DLDQFKLVNDTLGHHIGDELLVQVANRLVQQPGSGQTLARIGGDEFNILIEGVG--DIQQ 502

Query: 195 LANDLRKIIEN-SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
           L   + + +    +  + +G  I I+ S G+A      E   ++I  AD A+Y +K  GR
Sbjct: 503 LKEIVGQYLAQFHEPFLCAGLEIDISASIGVATFPRDGEDSVSLIKHADLAMYKSKDKGR 562

Query: 253 NRVVCFSD 260
           N    +SD
Sbjct: 563 NNYSFYSD 570


>gi|254458097|ref|ZP_05071523.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207084933|gb|EDZ62219.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 516

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 87/175 (49%), Gaps = 8/175 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQI 142
           +++L          S+ D L+ L N  A              Y    S+V FD+D+FK +
Sbjct: 341 VRKLERELEDAKNASKEDFLTKLYNRRALDDFMGVKEAEFERYGHNFSVVMFDLDHFKSV 400

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           NDNFGH  GD V+   +  L     +   VGR GGEEF A    +  +  AI A  +RK 
Sbjct: 401 NDNFGHEAGDAVLGAFAKILKKEARSVDVVGRFGGEEFMALLSETDTEGGAIFAEKVRKH 460

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +E ++  +  G  I +T+S GI+ER     +S +I  AD+ LY AKK GRN+V  
Sbjct: 461 VEKARF-MYKGERIEVTVSCGISERKKHTSLSNVINSADEYLYKAKKDGRNQVAY 514


>gi|192361145|ref|YP_001983912.1| GGDEF domain-containing protein [Cellvibrio japonicus Ueda107]
 gi|190687310|gb|ACE84988.1| GGDEF domain protein [Cellvibrio japonicus Ueda107]
          Length = 371

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 111/226 (49%), Gaps = 32/226 (14%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILK--------------------ELFISYNRIS 101
           E+I  E   L+I+   ++ +  Y +  +++                    +L +  ++  
Sbjct: 147 EWISKETWYLLILGCWMAGITLYATSRLIQLNRQTKHDTQVINSLHLDKQKLQLETDKFR 206

Query: 102 QLSRIDCLSGLLNHSAFIS---SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151
           +LS +D L+   N         +L +++E         +++  DID+FKQINDN+GH +G
Sbjct: 207 RLSTVDPLTQAYNRFGIDQIVTTLMNHSELQTTEAADFALMVMDIDHFKQINDNYGHDLG 266

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DK++  ++  +        F+GR GGEEF      +S++ A  LA+ +R++I  +     
Sbjct: 267 DKILQRIAHIIQENLHAEDFLGRWGGEEFIVIQPNTSKEFAMALADKIRQVIATTYFE-- 324

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           SG ++ +T+S G+ ER   E  +    R D+ALY AK  GRNR + 
Sbjct: 325 SGNTVRVTLSVGVGERLIGEDFAATFKRVDEALYRAKAEGRNRCIM 370


>gi|113866056|ref|YP_724545.1| signal transduction protein [Ralstonia eutropha H16]
 gi|113524832|emb|CAJ91177.1| predicted signal transduction protein containing PAS, GGDEF and EAL
           domains [Ralstonia eutropha H16]
          Length = 880

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 11/182 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
            + E   +   I   +  D L+ L N   F   L    E+       L+++F D+D FK+
Sbjct: 438 DMTEKRQAEEVIRHQANFDALTDLPNRRLFFDRLRQEIERSRGTQDVLALLFIDLDRFKE 497

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLR 200
           +ND  GH  GD ++   + ++         V RL G+EF        +   A  +A  + 
Sbjct: 498 VNDTLGHDQGDLLLLEAARRIAASVRASDTVARLAGDEFTVILPAVGDAGVAGGIAQAIL 557

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + I        +G  + ++ S G+A      +    ++  ADQA++ AK+ GRNR   F+
Sbjct: 558 ERIAA--PYRLAGELVVVSASIGVATWPKDADNAEDLLVCADQAMFAAKEEGRNRWKVFT 615

Query: 260 DI 261
             
Sbjct: 616 QA 617


>gi|330878551|gb|EGH12700.1| diguanylate cyclase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 501

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 98/228 (42%), Gaps = 13/228 (5%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR 99
           A   +     L  + +T   GL  ++      +I+ I    L+        ++L +S  +
Sbjct: 274 AFAAWRTEALLSAVVVTSLLGLTGLIG---WFLIVDIRRRTLIENQLRGAQQQLILSNRQ 330

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+GL N   F  +L             L+++  DIDYFK+ ND FGH  GD
Sbjct: 331 LELLAMKDALTGLANRRCFDQTLSKEARRAQREGTTLALLMIDIDYFKRFNDTFGHVAGD 390

Query: 153 KVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
             +  + + L   V      V R GGEE       +  Q A ++A  +   +E   I  +
Sbjct: 391 VCLRAVGEILEESVKRPSDLVARYGGEEMGIIMPNTDGQGATVVAQLIIDRLERKNIRHN 450

Query: 212 SGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S P   +++S GI  A     + +   I  AD+ALY AK  GRN+   
Sbjct: 451 SSPFGRVSVSIGIIAAAGSQLDNVMGFIQGADRALYNAKALGRNQFAA 498


>gi|298571342|gb|ADI87685.1| hypothetical protein LW2_0100 [uncultured Nitrospirae bacterium
           MY2-3C]
          Length = 728

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 9/195 (4%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LS 130
           ++L L    G  +  L +  + +  LS  D L+GL N      +L    ++       + 
Sbjct: 528 LALRLAEGCGLAITNLKLQES-LRNLSMRDPLTGLFNRRYMKETLELEWQRSLRKYVHIG 586

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           I+  DID+FKQ ND FGH  GD+++  L   LV          R GGEEF      SS +
Sbjct: 587 IIMIDIDHFKQFNDTFGHDGGDRLLCELGMFLVKHIRGGDIACRYGGEEFTIIMPESSLE 646

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
                A  +R+   +  +         IT+S G+A    H    + ++  AD ALY AK+
Sbjct: 647 VTTQRAEHIREAATHMHVMYKQQSLGPITLSLGVAVLPLHGSDTNAVLQAADAALYNAKR 706

Query: 250 SGRNRVVCFSDIENN 264
            GRNRV    +  + 
Sbjct: 707 QGRNRVCVAQEASSQ 721


>gi|296125463|ref|YP_003632715.1| diguanylate cyclase [Brachyspira murdochii DSM 12563]
 gi|296017279|gb|ADG70516.1| diguanylate cyclase [Brachyspira murdochii DSM 12563]
          Length = 342

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 92/185 (49%), Gaps = 17/185 (9%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           ++K+L    + +   S ID L+GL N   F       +     Y   +SI+F D+D+FK 
Sbjct: 158 VIKKLMKEIDTLHAQSTIDPLTGLFNVRYFNKVIEEEVDRAKRYKYSISIIFMDLDHFKD 217

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVF-------GTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           IND +GH  G+ V+  +   L                  R GGEEF      + +++A I
Sbjct: 218 INDIYGHDCGNLVLHEIGKLLSNASDNNIHMLRKSDVAIRYGGEEFIVICPNTKKEQAYI 277

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGR 252
           +A  +RK +E  + N  S   I++T+S GIAE     K+PI+  I  AD A+Y AK  GR
Sbjct: 278 VAERIRKTVEKKRFNYESTI-INVTVSVGIAEHKGTSKKPIAETIKNADSAMYEAKHLGR 336

Query: 253 NRVVC 257
           N+V+ 
Sbjct: 337 NKVIM 341


>gi|222834177|gb|EEE72654.1| predicted protein [Populus trichocarpa]
          Length = 308

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 118/239 (49%), Gaps = 15/239 (6%)

Query: 28  MIYFS-IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS 86
           M+Y+S + F+ + A    +  + L    L       Y LV  +S +  ++  +L+L    
Sbjct: 70  MLYWSYVVFAGYTAARPLLV-LALGSTDLNEIARSTYWLVTLVSTLSFALLFTLML---L 125

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQ 141
              ++++F +   + +    D L+ LLN  AF  +        +   +S++  DID+FK+
Sbjct: 126 ACTVRDVFTA---LREERNHDSLTNLLNRRAFQEAAELRLADPHMAPISVLIGDIDHFKR 182

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND++GH  GD+V+  ++  L         V R GGEEF    + ++ QEA  +A  +R 
Sbjct: 183 INDSWGHDCGDRVLQAVAQTLQQHVRNDDLVCRFGGEEFVLLLMRTTPQEAERVAQRIRA 242

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +      +++G    +TIS GIA       ++  + RAD  LY AK++GR+RV   +D
Sbjct: 243 QLSADGYVLAAGQ--RVTISFGIAPVAANTALTDALTRADGLLYAAKQAGRDRVHVATD 299


>gi|190570797|ref|YP_001975155.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|213019676|ref|ZP_03335481.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|190357069|emb|CAQ54466.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|212994717|gb|EEB55360.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 458

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 96/193 (49%), Gaps = 15/193 (7%)

Query: 79  SLLLGYISGSILKELFISYNRIS-----QLSRIDCLSGLLNHSAFISSLG-------SYN 126
           S L+  ++  + ++ +    R++     ++S  D L+   N   F + L          +
Sbjct: 264 SELIARVNLQVKRKRYQDALRMNLFNNVEMSIKDPLTNCYNRRYFDAHLRNIVKDSVEKD 323

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             LS++  DIDYFK +NDNFGH  GD+++  +  ++         + R GGEEF      
Sbjct: 324 RSLSLMILDIDYFKMVNDNFGHNAGDELLKEIQKRISENIRVTDLLARFGGEEFVVVMPD 383

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIA--ERCHKEPISTIIYRADQA 243
           ++  +A  +A  +RKII      +    + H +T+S GI+  +R   + +   I RAD+ 
Sbjct: 384 TNVSDAYTIAERIRKIIAKEPFILVGKNTTHNVTVSIGISAMQRSDLDDVKKFIVRADKY 443

Query: 244 LYVAKKSGRNRVV 256
           LY AK SGRNRVV
Sbjct: 444 LYKAKNSGRNRVV 456


>gi|134300533|ref|YP_001114029.1| diguanylate cyclase [Desulfotomaculum reducens MI-1]
 gi|134053233|gb|ABO51204.1| diguanylate cyclase [Desulfotomaculum reducens MI-1]
          Length = 417

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 110/223 (49%), Gaps = 15/223 (6%)

Query: 47  NIFLFYIGL-TPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR 105
           N F+  +G+    +  +  +    ++VI+S  I +LLG I       LF +   +S+   
Sbjct: 193 NQFIGLLGVDIALHQFDRSVWYVKNIVIMSFGIIVLLGGII------LFFASKILSKPLY 246

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+ L N           I         LS +  D+DYFK IND FGH  GD ++  +
Sbjct: 247 MDELTKLFNREYMKIRLESEIRRARRNKLPLSFLMLDLDYFKSINDCFGHQTGDLILKKI 306

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IH 217
           S+ + V         R GGEE A     +   EA I+A  LR++IE + + ++     IH
Sbjct: 307 SELICVSLREEDLAFRYGGEEIAILLPETGLYEAKIVAERLRQVIETNSLYVNHYEEPIH 366

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +TIS G+AE   K+   T+I +AD ALY+AKK GRN   C  +
Sbjct: 367 VTISIGLAELAAKDTQETLIKKADDALYLAKKKGRNCYQCIEE 409


>gi|329850534|ref|ZP_08265379.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
 gi|328840849|gb|EGF90420.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
          Length = 352

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 60/188 (31%), Positives = 94/188 (50%), Gaps = 11/188 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYF 139
           S   +  L    +++   +  D L+ L N  +F  SL ++       + L++   DID+F
Sbjct: 162 SSREVTRLRKHLDQVRMEAMTDALTNLANRKSFDESLDAHCDTDDVTKPLTLAVIDIDHF 221

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+ ND +GH  GD+V+ +++  L  +   P    R GGEEF     G +      L N+ 
Sbjct: 222 KRFNDTWGHQTGDQVLRYVASVLARIGRPPRMAARYGGEEFGLLFPGETSGTVERLLNEA 281

Query: 200 RKIIENSQINISSGPS--IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R  I +  +   S       +TISAGIA+R H E    ++ RAD+ALY++K +GRN+V  
Sbjct: 282 RTEIASRVLKRRSTNEDLGTVTISAGIAQRTHAEDAFDLLDRADKALYLSKNNGRNKVTV 341

Query: 258 FSDIENNT 265
               EN T
Sbjct: 342 ---AENET 346


>gi|222529500|ref|YP_002573382.1| diguanylate cyclase with GAF sensor [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222456347|gb|ACM60609.1| diguanylate cyclase with GAF sensor [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 557

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 9/185 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFFDIDYFKQ 141
           SI  E    Y ++  ++ +D L+G  N       L    +       +SI  FD+D FK+
Sbjct: 373 SIALENSSLYQQMRSMAMVDGLTGAFNRIYLYEVLEREIQASAGRYPISIALFDVDNFKK 432

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH  GDKV+  +             V R GGEEF          EA  +   +R+
Sbjct: 433 LNDTYGHLFGDKVLQTIVRIAREKVRKGDIVARYGGEEFIIVFNHLESNEAYKVVERIRR 492

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS- 259
            IE+  I   +     +T+S GIA    H + +  +I  AD A+Y AK SG+N  V ++ 
Sbjct: 493 AIESEIIE-DNLIQTRVTVSFGIASYPLHADNVKDLIKCADIAMYRAKSSGKNCTVVYNQ 551

Query: 260 DIENN 264
           ++E  
Sbjct: 552 ELEMK 556


>gi|324113194|gb|EGC07169.1| GGDEF domain-containing protein [Escherichia fergusonii B253]
          Length = 410

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--------EKLSIVFFDIDYFK 140
            + E       + Q +  D L+GLLN   F   L  +N        +  S++  D D FK
Sbjct: 238 DITEQKRLEQELEQAAMRDALTGLLNRRQFF-LLTEHNSSQPGLMSQDYSLLLIDTDRFK 296

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GH  GD V+  L+  L         V R GGEEF      ++  +A  LA  +R
Sbjct: 297 SVNDLYGHQKGDDVLCVLARTLESCARKGDLVFRWGGEEFVLLLPRTTLDDALALAETIR 356

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +   +I ++  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 357 AQVA--KITLTGLP--RFTVSIGVARHEIDETIDALFKRVDDALYRAKNDGRNRV 407


>gi|294341946|emb|CAZ90375.1| hypothetical protein; putative membrane protein [Thiomonas sp. 3As]
          Length = 523

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 12/189 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKL-SIV 132
           ++ G +  S  K L     ++  L+  D L+GL N   F + +          +    I+
Sbjct: 339 IVTGMVEISAQKHL---EQQLRALAHTDPLTGLQNRRGFFAMVEHALRTRPAGQPGPCIM 395

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FKQIND +GHPVGD+++   +  ++ +        R+GGEEF      +   +A
Sbjct: 396 LIDLDHFKQINDRYGHPVGDEILVEFAQVVLSLLREGDVFARMGGEEFCILLAHTRASQA 455

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSG 251
             +A  +R+ +       S+G  + +++S GIA      + I  ++  ADQA+Y AK+ G
Sbjct: 456 LEVAERVREFVAAHPFQTSAGV-VRLSLSLGIAGCDAPVQSIDRVLSMADQAMYRAKQGG 514

Query: 252 RNRVVCFSD 260
           RNR   + D
Sbjct: 515 RNRTELYCD 523


>gi|70733694|ref|YP_257334.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens
           Pf-5]
 gi|68347993|gb|AAY95599.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           fluorescens Pf-5]
          Length = 330

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 9/178 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYF 139
              + E       + +L+  D L+   N   F        E+       L+ +  DID F
Sbjct: 152 AEDITEKKQLETELQRLATTDVLTQSSNRRHFFECANREFEQARLQGSSLAFLLLDIDDF 211

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND +GHP GD V+  +++            GR+GGEEFAA   G +   A  +A  L
Sbjct: 212 KVINDTYGHPEGDIVLQRIAESGRAALRRGDLFGRIGGEEFAAVFPGCTADMARQVAERL 271

Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++ I+    +   G +  IT+S G+       E +  +  RAD A+Y AK+ G+NR++
Sbjct: 272 QREIQRQNFSH-QGQTFTITVSQGLTGLLAEDESLDNLFARADSAMYEAKRQGKNRII 328


>gi|126462830|ref|YP_001043944.1| response regulator receiver modulated diguanylate cyclase
           [Rhodobacter sphaeroides ATCC 17029]
 gi|126104494|gb|ABN77172.1| response regulator receiver modulated diguanylate cyclase
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 461

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 13/169 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+ +D L+GL N     + L +        +E+ +++  D+D FK +ND +GH  GD V
Sbjct: 287 RLAVVDPLTGLYNRRYAGAHLAAVAERARAADERFAVMVIDLDRFKSVNDRWGHGAGDAV 346

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSG 213
           +  ++ +L         + R+GGEEF  A       ++A  +A  LR+ +E   + +  G
Sbjct: 347 LVAVARRLHANLRPGDLIARIGGEEFLVALPDVPRPEDAHAVAERLREAVEEEPVPLPGG 406

Query: 214 PSIHITISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNRVVC 257
            S+ +TIS G+A          EP+  ++ RAD AL +AK +GRN+V  
Sbjct: 407 GSLRVTISVGLALSPDGAGRRAEPVDAVVQRADSALLLAKSAGRNQVTI 455


>gi|300855858|ref|YP_003780842.1| membrane associated GGDEF domain-containing protein [Clostridium
           ljungdahlii DSM 13528]
 gi|300435973|gb|ADK15740.1| membrane associated GGDEF domain containing protein [Clostridium
           ljungdahlii DSM 13528]
          Length = 373

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 118/234 (50%), Gaps = 13/234 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV-IISITISLLLGYISGSILKE 92
           +  + I+++I     FLF   ++    +   + +   +  I++IT   ++ Y+   I  +
Sbjct: 143 WLCMIISSLIL---HFLFMNIVSSTAKINNTIYKAFIIYSILTITFGFIIYYLCEYI-NQ 198

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDN 145
             + + +  + S  D L+GL N   F               E+LS++  DID+FK+IND 
Sbjct: 199 SSLLFLKFKEDSCRDFLTGLNNVRNFNNLFNDLSKRAVERKERLSLIMIDIDWFKKINDT 258

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GHP GD+V+  ++  L  V  +   + R GGEEF+   +    ++A  +   +RK IE 
Sbjct: 259 YGHPSGDEVLKQIALILKTVCRSFDIISRNGGEEFSILLIDCPNRQAIEIGEQIRKAIEK 318

Query: 206 SQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +  +S+G  I+I++S G+         +  II  AD ALY AK +GRN+V+ +
Sbjct: 319 HEFILSTGKKINISVSIGVTTYPDIVNNVKQIIESADIALYEAKHTGRNKVIPY 372


>gi|226941568|ref|YP_002796642.1| Diguanylate cyclase [Laribacter hongkongensis HLHK9]
 gi|226716495|gb|ACO75633.1| Diguanylate cyclase [Laribacter hongkongensis HLHK9]
          Length = 347

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 80/187 (42%), Gaps = 9/187 (4%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVF 133
           LL         EL ++  ++ Q++  D L+G+ +   F                 LS + 
Sbjct: 155 LLEQRVALRTAELEMANAQLRQMAMYDSLTGVYSRGVFFELASEALALTRQECAPLSALM 214

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK++ND +GH  GD+V+     +L         +GR GGEEFA          A 
Sbjct: 215 LDIDFFKKVNDTWGHAAGDQVLRLAGRRLREQLRGSDIIGRCGGEEFAVILPRQQADRAC 274

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
            +A  L   +         G  I  +IS G+AE     E I  +++RAD AL  AK  GR
Sbjct: 275 AVAQQLCDAMCTRPFPW-EGQQIACSISIGVAELSREDESIEKLLHRADLALLQAKGDGR 333

Query: 253 NRVVCFS 259
           N     S
Sbjct: 334 NCYRLAS 340


>gi|206580868|ref|YP_002238397.1| sensory box-containing diguanylate cyclase [Klebsiella pneumoniae
           342]
 gi|288935373|ref|YP_003439432.1| diguanylate cyclase with PAS/PAC sensor [Klebsiella variicola
           At-22]
 gi|206569926|gb|ACI11702.1| sensory box-containing diguanylate cyclase [Klebsiella pneumoniae
           342]
 gi|288890082|gb|ADC58400.1| diguanylate cyclase with PAS/PAC sensor [Klebsiella variicola
           At-22]
          Length = 418

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 61/193 (31%), Positives = 91/193 (47%), Gaps = 12/193 (6%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
           V+  +  ++   I L+L  I    + E       +   +  D L+GLLN   F   + + 
Sbjct: 217 VQTYAGPVVLYNIRLMLCIIH--DITEEVHLKKELEFSAAHDPLTGLLNRREFYRLVEAP 274

Query: 126 N---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
           +   +   ++  DID+FK IND  GH  GD+V+  +S  L         + R GGEEF  
Sbjct: 275 SFIAQGFCLLLIDIDHFKSINDIHGHQKGDEVLLVISRILETSVDREDKIYRWGGEEFLL 334

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
               S    A ILA  +R+ +   Q       ++ +T+S G+AE    E I  +  R D+
Sbjct: 335 FLPHSPIARALILAEGIRQAVSEYQ-------TLSVTVSIGVAEHHDGEAIDQLFSRVDK 387

Query: 243 ALYVAKKSGRNRV 255
           ALYVAK  GRNRV
Sbjct: 388 ALYVAKNGGRNRV 400


>gi|88608688|ref|YP_506396.1| response regulator PleD [Neorickettsia sennetsu str. Miyayama]
 gi|88600857|gb|ABD46325.1| response regulator/GGDEF domain protein [Neorickettsia sennetsu
           str. Miyayama]
          Length = 456

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 9/165 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +++ ID L+ L N   F   +         S N+  S++  DIDYFK+IND  GH  GD 
Sbjct: 287 KMAVIDPLTSLYNRYYFEKYMDELLATLTKSQNKTFSLMMIDIDYFKKINDVCGHLSGDL 346

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISS 212
           V+  L+  L         V + GGEE     +    ++A   A  +RK +E ++ + I+ 
Sbjct: 347 VLKQLAACLKGCLRLNDLVAKFGGEEIVVVLVDVGLEDAFDTAERIRKTVEKTEFSTIND 406

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              + +T+S G++E   ++   T+I RAD  LY+AK+ GRNRVV 
Sbjct: 407 EVKVPLTVSIGVSEYQPQDTTKTLIGRADANLYIAKEKGRNRVVM 451


>gi|332994633|gb|AEF04688.1| Signaling protein with a acyltransferase and GGDEF domains
           [Alteromonas sp. SN2]
          Length = 635

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 11/178 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL      + +L+ ID L+G+ N   F   L             LSI   DID+FK+I
Sbjct: 454 LRELSEVNQELERLTAIDPLTGINNRRHFDKKLKSEGRRSRREQTPLSIAVIDIDHFKRI 513

Query: 143 NDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD  +  ++  +   +      + R+GGEEFA     +    A  +   +R 
Sbjct: 514 NDKYGHAGGDACLIHITGIIQGMLLRLSDDLCRIGGEEFALILPNTDSDGAYHVVEAIRD 573

Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            IE S I    G +I +TISAG+A      ++  + ++  AD+ LY AK+SGRN+V+ 
Sbjct: 574 RIEKSPIMF-DGEAIQLTISAGLATSIITDEDHAAALLRLADEQLYAAKESGRNKVLF 630


>gi|260774238|ref|ZP_05883153.1| GGDEF family protein [Vibrio metschnikovii CIP 69.14]
 gi|260611199|gb|EEX36403.1| GGDEF family protein [Vibrio metschnikovii CIP 69.14]
          Length = 338

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 60/172 (34%), Positives = 87/172 (50%), Gaps = 5/172 (2%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNF 146
           + +L      + + +  D L GL N  AF + L +     + LSI+  DID+FK  ND+F
Sbjct: 165 ISKLRSQLAEVQKDALFDPLCGLYNRRAFNNDLLAMLHAQQALSIILLDIDHFKSYNDDF 224

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD V+  ++ ++       M   R GGEEF       + + A   A  +R+ IE  
Sbjct: 225 GHLFGDSVLRAIAKRIQGNCREAMTAYRFGGEEFVILLPNMTLRSARQFAESVRRSIEKL 284

Query: 207 QI-NISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            + +  SG  I  IT S G+AE    E   T++ RAD+ LY AK  GRNRV+
Sbjct: 285 SVRDRRSGQQIGNITASFGVAEYQSLEAADTLVDRADKMLYQAKNLGRNRVM 336


>gi|51892837|ref|YP_075528.1| hypothetical protein STH1699 [Symbiobacterium thermophilum IAM
           14863]
 gi|51856526|dbj|BAD40684.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 720

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 9/183 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           +    + +       + +L+ +D L+ L N   F   L              ++VF D+D
Sbjct: 276 LQLQDITDRKRYEEELVRLAMVDSLTDLANRRRFQQELEEAVTEAERTGRSGALVFIDLD 335

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK IND  GHP GD+V+  ++  L           RLGG+EFA     +    AA +A+
Sbjct: 336 MFKHINDTLGHPAGDEVLRQVATILRSAIRPGDTAARLGGDEFALVLRNADGARAAQVAD 395

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            L   I  ++   +  P + +T S G+     H   +  ++ RAD AL  AK+ GR+   
Sbjct: 396 RLLTAIRRARFGGAEAP-VSLTASMGVVLFPEHGRSVRELMNRADMALLEAKEGGRDSWA 454

Query: 257 CFS 259
            F+
Sbjct: 455 PFT 457


>gi|109899843|ref|YP_663098.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
 gi|109702124|gb|ABG42044.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
          Length = 590

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 25/204 (12%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           +     +L      + QL+  D L+GL N    +  L  +         + +++F D+D 
Sbjct: 126 ASQAFADLVTQQQELHQLAFYDSLTGLPNRQYLMQDLKRFLAMAKRNKYQAAMLFIDLDR 185

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR--------------LGGEEFAAAA 184
           FK+IND  GH  GDK++  ++ +L           R               GG+EF    
Sbjct: 186 FKRINDTMGHSYGDKLLRKVAHRLQANLRDSDTFARVAAEKNKEAPQLSSFGGDEFTIFL 245

Query: 185 LG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQ 242
              +   EA ++A  + +    S         + +T S GI+      E   T++  AD 
Sbjct: 246 SRLNDPNEAMLVAERVIRSF--STPFQLEQYEVVVTPSIGISTFPNDGEDAETLLKNADT 303

Query: 243 ALYVAKKSGRNRVVCFSDIENNTC 266
           A+Y AK+SGR     + D  N+  
Sbjct: 304 AMYFAKQSGRCCYKFYQDSMNSKA 327


>gi|330501640|ref|YP_004378509.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328915925|gb|AEB56756.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 635

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 11/179 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQIN 143
           ++L      +   +  D L+ L N    +            + E ++++  D+D+FK IN
Sbjct: 437 EQLRERERELQHAAFHDPLTELPNRRYLVERCESALGHAERHKESVALLLIDLDHFKPIN 496

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKI 202
           D FGH  GD ++  ++ +L         V RLGG+EFA    GS  + +A  +A  L  +
Sbjct: 497 DRFGHAAGDLMLQVIAKRLREHVRLGDAVARLGGDEFAVLICGSDAESQAREIAERL--L 554

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            E S+        + +TIS G+A    H +  + +   AD ALY  K+ GR+      D
Sbjct: 555 AELSEHVHYGAERLRVTISIGVALYPRHAQNFTGLYKIADHALYRVKELGRSGARVHGD 613


>gi|330502902|ref|YP_004379771.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328917187|gb|AEB58018.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 644

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 10/179 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L++L  +  R+++L+R D L+GL N       L           + L+I+  D+D+FKQ+
Sbjct: 460 LQQLSNANLRLAELNRRDGLTGLFNRQTLSEELARACARAERSRQSLAILMMDLDHFKQV 519

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD  +   + ++     +   + R GGEEF A    +    A  LA  LR+ 
Sbjct: 520 NDRHGHLAGDACLRHAAQRIQQRLRSSDLLARFGGEEFVALLDSTDLTGALDLAEQLRED 579

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFS 259
           I  +  +     SI +++S G+      +P      +  AD+ALY AK  GRNRVV + 
Sbjct: 580 IARTPCSYQQ-QSIPLSLSIGLHAGVPSDPCCGEHWLELADRALYRAKSDGRNRVVSYE 637


>gi|327482752|gb|AEA86062.1| GGDEF domain-containing protein [Pseudomonas stutzeri DSM 4166]
          Length = 621

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 79/170 (46%), Gaps = 8/170 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L        Q +  D L+GL N +A+   L         Y   L +   D+D+FK++ND 
Sbjct: 450 LRGHLEEQRQKALQDPLTGLPNRAAWNERLDLEFARWQRYGGDLLLAVLDVDHFKRVNDG 509

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD+V+  +  +L        F+ R GGEEF      +  +    L   LR+ I +
Sbjct: 510 YGHLAGDRVLKIIGTELQKRLRKTDFIARFGGEEFVVLLPNTPYEAGRQLMETLRESIGS 569

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              +   G  + IT+SAG+      +       RAD+ALY AK SGRNRV
Sbjct: 570 CPFHFK-GERVAITLSAGLTAFVIGDTAERAFERADRALYRAKDSGRNRV 618


>gi|258593353|emb|CBE69692.1| putative Diguanylate kinase [NC10 bacterium 'Dutch sediment']
          Length = 420

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 9/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           +I  E    +  + +L+  D L+GL NH  F S L         Y   LS++  DID FK
Sbjct: 225 AIAIETGRLFQEVHRLAITDELTGLFNHRHFYSQLDQDLRRNRRYGHPLSLIMLDIDLFK 284

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q ND  GH  GD+ +   + +L         V R GG+EF      +  ++A + A  +R
Sbjct: 285 QYNDFHGHLAGDEALRLTAARLKKSTRGADIVARYGGDEFGIILPETDPRQALVQAERVR 344

Query: 201 KIIENSQINISSGPSIH-ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            ++          P  + +T+S G+A        +  ++  ADQALY AK +G N++  
Sbjct: 345 SVMARDHFGGQGTPGRNTLTVSLGVACLGPDMYKVEDLVRAADQALYCAKAAGGNQIAV 403


>gi|253688264|ref|YP_003017454.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251754842|gb|ACT12918.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 722

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 13/207 (6%)

Query: 64  ILVENLSLVIISITISLL-----LGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           +  ++ SLV + +++S+      + Y      + E   +  R+  L+ +D L+GL N + 
Sbjct: 250 VQAKSGSLVPVELSVSMWEDNDNISYGAILRDITERRRNEERLFLLAHLDPLTGLANRTL 309

Query: 118 FISSLGSY--NEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
             S+L +   NE  + I+  D+D FK +ND+ GH  GD ++  ++ ++     +   V R
Sbjct: 310 LTSNLETALKNEPAVCIMMVDLDGFKDVNDSLGHSSGDNILVHVAKKIKATVRSGDVVAR 369

Query: 175 LGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEP 232
           +GG+EFA    G + ++ A  +A  +  I E SQ  I     I+I+ S G          
Sbjct: 370 MGGDEFALLFPGLNDKKVAGKIAEQI--IHEISQAMIIDDHQINISASIGAVLYPEYGLT 427

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  ++  AD ALY AK  GRN    F+
Sbjct: 428 VQDLLTSADLALYQAKSEGRNCYRFFT 454


>gi|254784735|ref|YP_003072163.1| GGDEF domain-containing protein [Teredinibacter turnerae T7901]
 gi|237686237|gb|ACR13501.1| GGDEF domain protein [Teredinibacter turnerae T7901]
          Length = 436

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 87/175 (49%), Gaps = 12/175 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           SI K L +   +   L++ D L+GLLN       L             ++ V  D+DYFK
Sbjct: 263 SINKLLNLQNKQFEDLAKTDQLTGLLNRIGIREPLLAGLNAWKHTQTPMAFVLIDLDYFK 322

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GH VGD+V+   ++ +        +V R GGEEF      +S  +A  +A  LR
Sbjct: 323 MVNDRYGHDVGDQVLRKSAELVRSNVRESDYVARWGGEEFLLMLPDTSLTQAEQIAEMLR 382

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +E +QI+ ++     IT S G+A     + +  +   AD ALY AK++GRN V
Sbjct: 383 SKLETAQIHTAT----TITASFGVAALKE-DNLDNLFKAADDALYKAKQNGRNCV 432


>gi|220935844|ref|YP_002514743.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997154|gb|ACL73756.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 862

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 92/216 (42%), Gaps = 12/216 (5%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G E IL E+  LV       LLL   +   + E     NR+  L+  D ++GL N + F 
Sbjct: 396 GSERILHEDGELVYDDEGKPLLLRG-TAQDITERHDYQNRLRHLANFDPVTGLPNRTLFK 454

Query: 120 SSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L             ++++F D+D FK +ND+ GH +GD+++   +++L+        V
Sbjct: 455 DRLQHALANATRNQRLVALLFLDMDQFKNVNDSLGHMMGDELLRQTAERLLGCVREGDTV 514

Query: 173 GRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
            R GG+EF          ++A++ A  + + +   +            +S GI+      
Sbjct: 515 ARFGGDEFIILLENIEHSEQASLSAERVVQAMR--RPFRLGEHEHFCNVSIGISLYPEDD 572

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           E    ++  AD A+Y+AK  G      ++   N   
Sbjct: 573 EHPEDLVRHADSAMYLAKAQGGAGYRFYTPDMNTRA 608


>gi|159184564|ref|NP_354013.2| hypothetical protein Atu0989 [Agrobacterium tumefaciens str. C58]
 gi|159139868|gb|AAK86798.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 301

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 66/218 (30%), Positives = 101/218 (46%), Gaps = 13/218 (5%)

Query: 54  GLTPFYGLEYILVENLSLVIISITI--SLLLGYIS-----GSILKELFISYNRISQLSRI 106
           G  PF  +E  L +   ++    T+    +L  I+     G  L++L    +R  + +  
Sbjct: 82  GKLPFRTIETSLKDGRWMLTTETTLPGGWMLCVITDVSELGIELRDLRQERDRALKSALS 141

Query: 107 DCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GL N    + +L         + L+++  DID+FK +ND FGH  GD V+   + +
Sbjct: 142 DELTGLGNRRYAMDTLNHLLGPNKAQALAVIIMDIDHFKSVNDRFGHAYGDLVLKDFAAR 201

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L    G    +GR+GGEEF     GS    A  L   L   +  +   +   P    + S
Sbjct: 202 LSATAGRDDLLGRIGGEEFLLVLSGSRMHSADSLMRQLLSSLAQAS-PLGDRPDFRYSCS 260

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           AGIA     E  S ++  AD ALY AK +GRNR V ++
Sbjct: 261 AGIAYANPGESASEVLRHADTALYEAKNTGRNRYVIYA 298


>gi|241765248|ref|ZP_04763230.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
 gi|241365080|gb|EER59965.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
          Length = 254

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 80/165 (48%), Gaps = 9/165 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGD 152
           + +LS  D L+GL N   F + L    ++++       ++  DID+FKQIND  GH  GD
Sbjct: 49  LCELSLKDPLTGLANRRHFRAVLEREIDRVTRSGEAALLLMLDIDHFKQINDTHGHLAGD 108

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L         + R GGEEFA            ++A  +R+ + N+ + IS 
Sbjct: 109 VVLQSVARTLNACIRPMDTLARYGGEEFAVVLPACQAGFGKVVAERIRRAVANTPVRISP 168

Query: 213 GPSIHITISAGIAERCHKEPISTII--YRADQALYVAKKSGRNRV 255
              + +TIS G A        +T++   RAD  LY AK  GRN V
Sbjct: 169 SVEVQVTISIGGAFAMQWIRSTTLLWTDRADHQLYTAKSLGRNCV 213


>gi|241663896|ref|YP_002982256.1| diguanylate cyclase [Ralstonia pickettii 12D]
 gi|240865923|gb|ACS63584.1| diguanylate cyclase [Ralstonia pickettii 12D]
          Length = 555

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 99/200 (49%), Gaps = 9/200 (4%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS---- 120
           ++    LV  S+        ++  + + L  + + ++  +  D L+G+L    F++    
Sbjct: 357 VLATFVLVAWSLVRERQHHRVTRHLNQRLQRTNSALANEAHFDHLTGVLTRRRFLALFDT 416

Query: 121 ---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                 +  E L +V  D+D+FK+IND +GH VGD  +   +     V  +   VGRLGG
Sbjct: 417 VLARAHNRAEPLVLVLADLDHFKRINDTWGHAVGDMALQRFASLATGVLRSSDLVGRLGG 476

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EEFA     ++ + A  +A  LR  +  +  +  +G  + +T+S G+      +  S ++
Sbjct: 477 EEFAMVMGRTTLETATEVAERLRTAVAETDESFPTG--LSMTVSMGMTVCRPGDTASEML 534

Query: 238 YRADQALYVAKKSGRNRVVC 257
            RAD ALY AK+SGRNR V 
Sbjct: 535 KRADLALYRAKESGRNRHVA 554


>gi|160899475|ref|YP_001565057.1| diguanylate cyclase [Delftia acidovorans SPH-1]
 gi|160365059|gb|ABX36672.1| diguanylate cyclase [Delftia acidovorans SPH-1]
          Length = 282

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 80/174 (45%), Gaps = 9/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L    + +  LS  D L+GL N   F       I  +    E   ++  DID+FKQIND 
Sbjct: 64  LQALIDELCSLSLRDPLTGLANRRHFRTIAEREIDRVARSGEAALMLMLDIDHFKQINDQ 123

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD+V+  ++  L         + R GGEEFA             +A  +R  IE 
Sbjct: 124 HGHIVGDRVLQSVARTLTNCVRPMDTLARYGGEEFAIVLPACPATFGLSVAERIRSAIER 183

Query: 206 SQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
             + IS   ++ ITIS G A      +   +    RAD+ LY+AK +GRNRV  
Sbjct: 184 MPVVISPTLTLQITISIGGAYALQWIRSTTTLWTERADKQLYLAKSAGRNRVHI 237


>gi|15893919|ref|NP_347268.1| signal transduction protein [Clostridium acetobutylicum ATCC 824]
 gi|15023503|gb|AAK78608.1|AE007578_6 Signal transduction protein containing diguanylate
           cyclase/phosphodiesterase domain (GGDEF) and domain
           (EAL) [Clostridium acetobutylicum ATCC 824]
 gi|325508046|gb|ADZ19682.1| Signal transduction protein containing diguanylate
           cyclase/phosphodiesterase domain (GGDEF) and domain
           (EAL) [Clostridium acetobutylicum EA 2018]
          Length = 772

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 65/255 (25%), Positives = 114/255 (44%), Gaps = 17/255 (6%)

Query: 17  KNLESFSPHTFMIYFSIFFSIF----IATVIFIANIFLFYIGLTPFYGLEYILVENLSLV 72
           KN+ S     +++     + IF     + ++ +  IF+ Y  L+ +       + N +L+
Sbjct: 259 KNIGSEKKGLYLLLTIPVYVIFGGFDFSKILVLLYIFVAYEILSNYVQKA---INNETLL 315

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYN 126
                I+L+L        KEL +    +  +S  D ++ + N       L         +
Sbjct: 316 TYEKDINLILEEKIKERTKELLLKNQELEYISNHDPITNVYNRRYLNKRLQCIINEKKLD 375

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
            +++I++ D+D FK IND +GH +GD V+  +SD+L         + RLGG+EF     G
Sbjct: 376 NQVTILYIDVDGFKTINDTYGHDIGDYVLIEISDRLKKTVKENNILARLGGDEFVIIIEG 435

Query: 187 S-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQAL 244
             S++E   +   L    + +    S     ++TIS G+A   H     + I+  AD A+
Sbjct: 436 KLSKEEIKNICEKLINSCKETI--YSDNYLFNVTISIGVAMFPHDAISRNVIMKNADIAM 493

Query: 245 YVAKKSGRNRVVCFS 259
           Y AK  G+NR   F 
Sbjct: 494 YDAKSKGKNRYSFFD 508


>gi|148547736|ref|YP_001267838.1| diguanylate cyclase [Pseudomonas putida F1]
 gi|148511794|gb|ABQ78654.1| diguanylate cyclase [Pseudomonas putida F1]
          Length = 522

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFK 140
           +I + L  ++  +  L+  D L+GL N                     L++V  D+DYFK
Sbjct: 332 AIERALLQAHQTLKALALTDSLTGLGNRRRLDGVFEPELRRARRQGYPLALVMLDLDYFK 391

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GHP GD+ +   ++ L            R GGEEF      +  + A +L  +L
Sbjct: 392 AYNDRYGHPAGDQCLRRFAEVLQQALKRPADLAVRYGGEEFTLLLPDTDGRGAEMLVQEL 451

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVV 256
           +K++    +  ++ P   ++ SAGIA             ++  AD+ALY AK+ GR+   
Sbjct: 452 QKLLRRQALEHAASPLGRVSFSAGIAVVDLAREGVTAEALVAAADRALYQAKQQGRDGYC 511

Query: 257 C 257
            
Sbjct: 512 V 512


>gi|257456482|ref|ZP_05621678.1| putative ggdef domain protein [Treponema vincentii ATCC 35580]
 gi|257446142|gb|EEV21189.1| putative ggdef domain protein [Treponema vincentii ATCC 35580]
          Length = 686

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 66/256 (25%), Positives = 105/256 (41%), Gaps = 39/256 (15%)

Query: 20  ESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LVENLSLVIISITI 78
           +SF     MI+F I     I        +FLFY     ++   Y  L+E   LV+I    
Sbjct: 454 QSFLISPVMIWFYILIISLI--------VFLFYKIHKLYWLQRYADLLEEKQLVLIQDNF 505

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSI 131
           +                    + +LS +D L+G+ N                 +   +++
Sbjct: 506 T--------------------LKELSLLDHLTGIGNRRYIDMLGLKIWQMAMEHKTAIAV 545

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQ 190
           + FDID+FK  ND FGH  GD+++  +   L          +GR GGEEF          
Sbjct: 546 MMFDIDFFKNYNDRFGHQAGDELLRLIGADLKKRIRTETDLIGRYGGEEFLIVMYNLFPD 605

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAK 248
           +A  +A  +RK +E              TIS G+       ++    +I++AD ALY AK
Sbjct: 606 KAMHIAEGIRKTVETMHERHPKEIVGQATISIGVFSETPSEEDTFEQMIHKADCALYRAK 665

Query: 249 KSGRNRVVCFSDIENN 264
           ++GRN+VV +    + 
Sbjct: 666 QTGRNKVVFYDTTMDQ 681


>gi|172062630|ref|YP_001810281.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
 gi|171995147|gb|ACB66065.1| diguanylate cyclase [Burkholderia ambifaria MC40-6]
          Length = 510

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 60/210 (28%), Positives = 94/210 (44%), Gaps = 18/210 (8%)

Query: 72  VIISITISLLLGYIS------GSILKELFISYNRISQLSRIDCLSGLLNHSAFI------ 119
           +  ++ + L   +I+         L+   I+ +++ +L+  D L+GL N   F       
Sbjct: 302 IWTAVLMGLFTAFIAWGSLALSRELRRRQIAESKLYRLAHTDSLTGLDNRGTFDAVLAKE 361

Query: 120 -SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGG 177
                     LS++F D+D+FK  ND +GH  GD V+  ++             V R GG
Sbjct: 362 AQRASRSGRPLSVLFVDVDHFKAFNDYYGHLAGDDVLRRVAQSASRCLRRDSDHVARYGG 421

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTI 236
           EEF      +  + AA +A  +R+ I    I     P  H+T S G A         + +
Sbjct: 422 EEFVVTLPDTDARGAATVAEAIRRAIAALDIAHGRSPYGHVTTSIGTATATGGRVNAAAL 481

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           + +AD+ALY AK  GRNRV   SD E +T 
Sbjct: 482 LRQADEALYRAKSGGRNRV---SDAEASTA 508


>gi|332993532|gb|AEF03587.1| Diguanylate cyclase/phosphodiesterase [Alteromonas sp. SN2]
          Length = 877

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 53/193 (27%), Positives = 92/193 (47%), Gaps = 13/193 (6%)

Query: 84  YISGS-ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFD 135
           Y+S S  + E+ ++  ++ +++  D L+ L N       L             L++ F D
Sbjct: 415 YVSLSTDISEIKLNEGKLERIAHYDLLTNLPNRVLLAKRLNQAIKHSQLQQNSLAVAFMD 474

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAI 194
           +D FK INDN+GH +GD+ +  +S+ L         + R+GG+EF        E  +   
Sbjct: 475 LDGFKAINDNYGHDIGDQFLVEVSNGLKASLRAGDTIARIGGDEFIIIMANLDEFSDCEH 534

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253
           + N L K   ++ +NI+    + ++ S G+            +I  ADQA+YVAK+ G+N
Sbjct: 535 VLNRLLKS-ASAPVNIAEAV-MQVSASIGVTVFPQDNVDADQLIRHADQAMYVAKQGGKN 592

Query: 254 RVVCFSDIENNTC 266
           R   F D+E +  
Sbjct: 593 RYHQF-DLEQDNA 604


>gi|304412236|ref|ZP_07393845.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           baltica OS183]
 gi|307306980|ref|ZP_07586720.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           baltica BA175]
 gi|304349502|gb|EFM13911.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           baltica OS183]
 gi|306910558|gb|EFN40988.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           baltica BA175]
          Length = 882

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 17/184 (9%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--------EKLSIVFFDIDYFKQ 141
           +++      ++   ++ D L+GL N + F+  L            E+ +++F D+D FKQ
Sbjct: 438 IQQRRSMEAKLVHDAKHDALTGLPNRAMFMERLSQAIKHVRRHSLEQFALLFIDLDRFKQ 497

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-----LGSSEQEAAILA 196
           IND  GH  GDK +   + +L         + RLGG+EF         +  +   +  + 
Sbjct: 498 INDTMGHLEGDKFLIETASRLKSCIRDNDTLARLGGDEFVILLDSINNINDARDVSERVI 557

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             + +      +  +SG SI ITIS     +   +   +++  AD A+Y AK +G+   V
Sbjct: 558 QKISQPYRLGTMEFNSGASIGITIS----GKHKVDTSESMLRNADTAMYQAKANGKGCYV 613

Query: 257 CFSD 260
            F D
Sbjct: 614 IFDD 617


>gi|228988642|ref|ZP_04148728.1| GGDEF domain protein [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228771093|gb|EEM19573.1| GGDEF domain protein [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 351

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 12/227 (5%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           SIFI  + F  N++   I + P   L   +   ++L ++  +++  + +IS + + +   
Sbjct: 126 SIFIRWIWF--NVYSLSILIVPLSMLFKDM-SIVALYLVCSSVAAYITFISANYVLQSNE 182

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
            + ++ Q + ID L+GL N   F   +  +       N+ L ++F DID+FK +ND + H
Sbjct: 183 LFQKMKQYATIDALTGLGNVRQFDLEMNRHISNKRTKNDSLCLLFIDIDHFKSVNDTYRH 242

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           P GD+V+  +   L  +   P    R GGEEFA             +   +R  +E    
Sbjct: 243 PAGDEVLKQIGCILREISPFPDLAFRKGGEEFALLIPQKGLAYGMHMGEQVRAAVEKHSF 302

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  G  I IT+S GI+    ++     I  AD ALY +K++GRN+V
Sbjct: 303 QLLDGTKIKITVSVGISVY--EQSPEQFIQAADDALYYSKRNGRNQV 347


>gi|226358101|ref|YP_002787840.1| metal dependent phosphohydrolase [Deinococcus deserti VCD115]
 gi|226319744|gb|ACO47738.1| putative metal dependent phosphohydrolase [Deinococcus deserti
            VCD115]
          Length = 1152

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 8/176 (4%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
            ++L  L      + + SR D L+G+ N      +L + + +       LS++  DID+FK
Sbjct: 977  ALLAALQEQTKVLQRQSREDGLTGVYNRRYIEEALATEHSRHRQTHRTLSLLMIDIDHFK 1036

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
             +ND F HPVGD+V+  ++            VGR GGEEF      ++  +A  +A  +R
Sbjct: 1037 AVNDKFSHPVGDEVLRRIAKLFKATCRAHDLVGRYGGEEFLIILPDTTVPQAIEVAERIR 1096

Query: 201  KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +++E         P +H+T+S G+  R        ++   D+ LY AK  GRNRV 
Sbjct: 1097 RLVEEYPWR-EIHPKLHVTLSLGVCGRMDVANHERLLSLVDEKLYEAKHGGRNRVA 1151


>gi|323701212|ref|ZP_08112887.1| diguanylate cyclase [Desulfotomaculum nigrificans DSM 574]
 gi|323533814|gb|EGB23678.1| diguanylate cyclase [Desulfotomaculum nigrificans DSM 574]
          Length = 337

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 73/257 (28%), Positives = 123/257 (47%), Gaps = 27/257 (10%)

Query: 23  SPHTFMIYFSIFFSIFIATVIF-----IANIFL----FYIGLTPFYGLEYILVENLSLVI 73
           SPH F+  F + + + +   +F     +A I+L      I     Y +    + ++SL+ 
Sbjct: 87  SPHNFITRFGMLYILGLIFYLFRFGQPLALIWLVGSILQIVSVGLYLMSMDCLYHMSLIP 146

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYN 126
           + I   L +G     +L +      ++  LS  D L+GL N     + L           
Sbjct: 147 VLIISYLFIG----KVLADEERVKQQLQNLSETDQLTGLANFRGLQARLEWCASHEAGKG 202

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           + LS++  DID FK+ ND +GH  G++++  L++ L+   G+ +F+ R GGEEF     G
Sbjct: 203 DSLSLIILDIDNFKKYNDTYGHEQGNRLLKELAEYLIFFMGSGVFMARYGGEEFIVLLPG 262

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQAL 244
            ++  A   A+ L   I     N        +TISAGIA       E +  +I +ADQAL
Sbjct: 263 VNQDTAKQTADRLVSGIAAHSFNHG-----PVTISAGIASTTSGSREEVFQLIEKADQAL 317

Query: 245 YVAKKSGRNRVVCFSDI 261
           Y AK++G+N+ V +++ 
Sbjct: 318 YRAKRNGKNQAVLYTEE 334


>gi|299771037|ref|YP_003733063.1| WspR [Acinetobacter sp. DR1]
 gi|298701125|gb|ADI91690.1| WspR [Acinetobacter sp. DR1]
          Length = 420

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 112/239 (46%), Gaps = 11/239 (4%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           M+Y  +  +IF+ + + +      YI L        IL  ++S ++ S   SL L     
Sbjct: 171 MLYVGLTAAIFVFSSLILLQANCDYIALGRALFGSCILGFSISTMLTSRERSLFLNNQLA 230

Query: 88  SILKE-LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139
            + ++ L I  + +  LS+ D L+ + N   F                 L+++F DID+F
Sbjct: 231 ELNEKILRIEASELLHLSQQDALTKISNRRTFDEMFDFFYYRAKQEQRPLAVLFIDIDFF 290

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND +GH +GDKVI+ ++  +        FV R GGEEF      +  Q A  +A ++
Sbjct: 291 KNYNDFYGHQMGDKVISSIASAIKNSIRHVDFVARYGGEEFVVLLPKTPAQGAYAVAANI 350

Query: 200 RKIIENSQINISSG-PSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
            K IE   I  ++   S H+TIS G              +I+ ADQALY AK+ GRN++
Sbjct: 351 YKAIERQAIPHAASLVSTHVTISLGFTVYTEGLKVTQENLIHAADQALYRAKQLGRNQI 409


>gi|196248193|ref|ZP_03146894.1| diguanylate cyclase with PAS/PAC sensor [Geobacillus sp. G11MC16]
 gi|196211918|gb|EDY06676.1| diguanylate cyclase with PAS/PAC sensor [Geobacillus sp. G11MC16]
          Length = 431

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 12/187 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            + E      ++  L+  D L+G  N   F       I      N++L+IV+ D+D+FK+
Sbjct: 247 DVTERVHYEEQLKYLAFHDALTGFPNRRLFLDVVRESIEEAKQTNDQLAIVYIDMDHFKE 306

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND FGH +GD+++   + ++           R+GG+EF     G  ++ +       L 
Sbjct: 307 VNDTFGHDMGDQLLKRFAQRVKENIEPNAIPCRMGGDEFLLLLRGVMNDLDIEKKVYKLH 366

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + ++  +    +G  I +T S GIA    H      +I  ADQALY AK   RN    +S
Sbjct: 367 QSMQ--KPFFINGHKIVVTTSIGIAIYPWHGSTAKELILHADQALYRAKAK-RNHYQFYS 423

Query: 260 DIENNTC 266
                  
Sbjct: 424 QEAKQAA 430


>gi|330963830|gb|EGH64090.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 825

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 12/190 (6%)

Query: 80  LLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           LL  +++  + +  L  +  R+   +  D L+GL N + F S L S            ++
Sbjct: 360 LLTHFVAVFADISSLKHAQARLDYRAHHDPLTGLPNRTLFESRLQSALLHSEESGSLGAV 419

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQ 190
           +F D+D FK IND+ GHP+ D ++  ++ +L         V RLGG+EF     G     
Sbjct: 420 LFLDLDRFKHINDSLGHPIRDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQPS 479

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKK 249
           +A  +AN L      S    +    ++I+ S G          ++T++  AD A+Y +K 
Sbjct: 480 DAKAIANKLLACF--STPFEAGEHDLYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKA 537

Query: 250 SGRNRVVCFS 259
            GRNRV  ++
Sbjct: 538 QGRNRVESYT 547


>gi|330874514|gb|EGH08663.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 332

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
              + E     + + +L+  D L+   N   F                 L+ +  DID F
Sbjct: 154 AEDITEKKHLEDELQRLATTDVLTQSSNRRHFFECAQREFELARLNGTPLAFLLLDIDDF 213

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND +GH  GD V+  +++            GR+GGEEFAA   G + + A  +A  L
Sbjct: 214 KLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCAPEMAMQIAERL 273

Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++ I+      ++G +  IT S G+       + +  +  RAD A+Y AK+ G+N++V 
Sbjct: 274 QREIQRQNFQ-ANGSTFSITASQGLTNLGPEDQGLEALYGRADAAMYQAKRQGKNQIVL 331


>gi|325919578|ref|ZP_08181590.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           gardneri ATCC 19865]
 gi|325549914|gb|EGD20756.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           gardneri ATCC 19865]
          Length = 494

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 53/200 (26%), Positives = 91/200 (45%), Gaps = 12/200 (6%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN 126
           + + + ++   + L +G      L+ +  +  ++S  + +D L+G+ N  AF   L    
Sbjct: 292 QRIVIAMLGFALLLAVGLWLDLQLRRMHRNEAKLSSEAWVDALTGIANRRAFDYRLSRAL 351

Query: 127 E-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGE 178
           +        LS++  D+D+FK  ND +GH  GD  +  ++  +         V  R GGE
Sbjct: 352 QDAVRLQAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIARAIAECSRRSDDVAARYGGE 411

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKE---PIS 234
           EF      +    A  LA+ +R  +    +   S P S H+T+S G A     E      
Sbjct: 412 EFGMILPHTDAAGALRLADAVRSAVAGLGLMHLSSPTSAHVTVSVGAATFEPGEAPRTPD 471

Query: 235 TIIYRADQALYVAKKSGRNR 254
             ++ AD ALY AK++GR+R
Sbjct: 472 AFVHDADSALYRAKQNGRDR 491


>gi|260222135|emb|CBA31398.1| hypothetical protein Csp_F37330 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 666

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 9/187 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSA----FISSLGSYNE---KLSIVFFDI 136
            +S   +  +  + +    L+R D L+GL N S     F  +L    E   + ++++ D+
Sbjct: 226 LMSEVDVTAIKHAQDHSQYLARHDSLTGLPNRSHVMQRFADTLRDMGEGATEAALIYIDL 285

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK IND  GH  GD ++  ++++L  +  +   V RLGG+EF    +  + +E   L 
Sbjct: 286 DHFKDINDTLGHAAGDALLVQVAERLRAITRSSDMVARLGGDEFLILMVSHNIREEVDLV 345

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
                      I+I  G  + +T S G++    H + + T++  AD A+Y AK+SGRN +
Sbjct: 346 RRRLSSTVAQPIHIH-GAEVIVTPSVGVSFYPEHGKELDTLLRNADLAMYSAKESGRNAL 404

Query: 256 VCFSDIE 262
             F    
Sbjct: 405 NIFESPM 411


>gi|120611687|ref|YP_971365.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
 gi|120590151|gb|ABM33591.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
          Length = 260

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 9/167 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGD 152
           + +LS  D L+GL N   F + L    ++++       ++  DID FK++ND  GH  GD
Sbjct: 54  LCELSLKDPLTGLANRRHFRTVLEREIDRVTRAGEAALLLMLDIDNFKRVNDTHGHMAGD 113

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L         + R GGEEFA            ++A  +R+ +E + + IS 
Sbjct: 114 IVLQSIARTLSRCVRPMDTLSRYGGEEFAVVLPACQAGFGKVVAERIRRAVERTPVRISP 173

Query: 213 GPSIHITISAGIAERCHKEPISTII--YRADQALYVAKKSGRNRVVC 257
              +++T+S G A        +T++   RAD  LY AK +GRNRV  
Sbjct: 174 TVELNVTVSIGGAFALQWIRSTTLLWTERADSQLYKAKLAGRNRVSI 220


>gi|94499383|ref|ZP_01305920.1| GGDEF domain protein [Oceanobacter sp. RED65]
 gi|94428137|gb|EAT13110.1| GGDEF domain protein [Oceanobacter sp. RED65]
          Length = 311

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 85/185 (45%), Gaps = 9/185 (4%)

Query: 82  LGYISGSILKELFIS--YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIV 132
           L  + G+++  L  +  Y      +  D L+G  N  A   SL         +   L+I+
Sbjct: 117 LEALMGTLIYPLRNAMRYRSALNQAFKDPLTGAGNRIALNESLQREMELAKRHGHDLAIL 176

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK IND FGH VGD+++    + +           R GGEEF       +   A
Sbjct: 177 MLDIDHFKTINDRFGHLVGDEMLKATVNTITQCVRQTDICFRYGGEEFVVILNNCNIANA 236

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            ++A  +R  +  + +       +  TIS G++     + +  +I+RAD ALY AK SGR
Sbjct: 237 RLIAERIRMDVSETVLQTQDDNFLQATISCGLSVYDANDTLENLIHRADIALYKAKNSGR 296

Query: 253 NRVVC 257
           N+V  
Sbjct: 297 NKVCV 301


>gi|83310899|ref|YP_421163.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945740|dbj|BAE50604.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Magnetospirillum magneticum AMB-1]
          Length = 622

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 82/173 (47%), Gaps = 9/173 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           E       + QL+  D L+   N   F       I   G Y   LS++  D+D+FK+IND
Sbjct: 446 ERACVQKELVQLATTDFLTDACNRRHFMQSTVAEIQRAGRYGRPLSLLMIDLDHFKRIND 505

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+ +         +      +GR+GGEEFA A   ++   A ++A  LR  + 
Sbjct: 506 ERGHAAGDEALKAFVVMARDLLRDQDIIGRMGGEEFAIALPETALNPALVVAERLRIRLA 565

Query: 205 NSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
             Q+ +  G  I ++ S G+AE      E +   + RAD ALY AK  GRNRV
Sbjct: 566 GLQVPVGGGEPIILSASFGVAECRVGAGEGLEACLGRADAALYRAKAMGRNRV 618


>gi|86144454|ref|ZP_01062786.1| GGDEF family protein [Vibrio sp. MED222]
 gi|85837353|gb|EAQ55465.1| GGDEF family protein [Vibrio sp. MED222]
          Length = 338

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 89/176 (50%), Gaps = 5/176 (2%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQI 142
           + S + +L      + + +  D  + L N  +F   I +L    + L ++  DID+FK  
Sbjct: 161 ATSEITKLKSQLVEVQKDALFDSTTTLYNRRSFDRDIETLCEAKQPLCLILLDIDHFKNF 220

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD V+  ++ +L  +    +   R GGEEFA      S + A  LA+  R+ 
Sbjct: 221 NDTYGHLFGDMVLKGIARKLKQMCREGISAYRFGGEEFAIIVPNKSLRIARQLADTNRRS 280

Query: 203 IENSQI-NISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +E   I +  SG  +  IT S G+AE    E   ++I RAD+ LY AK  GRNRV+
Sbjct: 281 LEKLSIKDRRSGQQVGSITASFGVAELEPGESAQSLIERADKLLYEAKSLGRNRVM 336


>gi|330502214|ref|YP_004379083.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328916500|gb|AEB57331.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 367

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 63/217 (29%), Positives = 100/217 (46%), Gaps = 18/217 (8%)

Query: 58  FYGLEYILVENLSLVIISITISL-LLGYISGSILKELFISYNRISQL----------SRI 106
              L+  ++++L  V+  +  S  L+       L  L  +   I+ L          + +
Sbjct: 141 LSALQEPIIDDLPSVLSELQESTQLMQDQQEKFLYRLRAAQQEITHLRSQLERAHLAATL 200

Query: 107 DCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+ + N  AF   L        + L++V  DID+FKQ ND +GHP+GD+V+  +   L
Sbjct: 201 DSLTRVFNRHAFTRLLERALKDSQQGLALVILDIDHFKQFNDQYGHPLGDRVLQHVGQLL 260

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSI--HIT 219
             +     F  R GGEEF       S   EA   A  LR  I++ ++ +     +   IT
Sbjct: 261 RDLLPPEAFAARYGGEEFCVVLRNCSNLDEALDFAEQLRNKIQSLRVKVRRTDQVLDSIT 320

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S G A     +   +++ RAD ALY AK++GRN+V 
Sbjct: 321 ASFGCAMAEEDDTFESLLTRADDALYQAKRAGRNQVH 357


>gi|283832989|ref|ZP_06352730.1| putative GGDEF domain protein [Citrobacter youngae ATCC 29220]
 gi|291071602|gb|EFE09711.1| putative GGDEF domain protein [Citrobacter youngae ATCC 29220]
          Length = 410

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 73/174 (41%), Gaps = 11/174 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
            + E       + Q +  D L+GLLN   F         +  S  +  S++  D D FK 
Sbjct: 238 DITEQKRLEQELEQAALRDALTGLLNRRHFYQVTEPQQTNAMSLTQDYSLLLIDTDRFKS 297

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH  GD V+  L+  L         + R GGEEF      +S   A  LA  +R 
Sbjct: 298 INDLFGHLKGDDVLCALARTLESCVRKDDLIFRWGGEEFVVLLPRTSLDAALNLAEVIRA 357

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +    +          T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 358 AVAKVTLPGLP----RFTVSIGVARHETNESIDELFKRVDDALYKAKNEGRNRV 407


>gi|242238670|ref|YP_002986851.1| diguanylate cyclase with beta propeller sensor [Dickeya dadantii
           Ech703]
 gi|242130727|gb|ACS85029.1| diguanylate cyclase with beta propeller sensor [Dickeya dadantii
           Ech703]
          Length = 985

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 8/175 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L        + +R D L+ L N   F   L         ++  L++  FDID+FKQIND 
Sbjct: 801 LQEQAEAFERQAREDQLTKLDNRRVFDEQLIRCFEDSQRHDYPLTLAIFDIDHFKQINDR 860

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           + H VGDKV+  ++D L       M + R GGEEF       + ++AA +   LR  +  
Sbjct: 861 WSHVVGDKVLQTIADILRNFHQDAMLIARWGGEEFTLLFPRMTVEQAAAVCESLRLALTK 920

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +     +   + +T S G+ +    +    +I +AD ALY+AK++GRN+VVC+SD
Sbjct: 921 ADYQTIAD-GLSVTASFGLCDSFTAKDSQELIRQADHALYLAKQTGRNKVVCWSD 974


>gi|226942206|ref|YP_002797279.1| hypothetical protein Avin_00370 [Azotobacter vinelandii DJ]
 gi|226717133|gb|ACO76304.1| transmembrane protein with C-terminal GGDEF motif [Azotobacter
           vinelandii DJ]
          Length = 529

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 8/163 (4%)

Query: 99  RISQLSRIDCLSGLLNHSA--F-ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R++Q +    L+GL+N     F +       +  +++  DID+FKQ+NDN GH VGD+V+
Sbjct: 357 RLNQENITAPLTGLVNRRGQQFALERWQEQQQPFAVIVLDIDHFKQVNDNHGHDVGDQVL 416

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             +S  +  V  +   V R GGEEF      +  + A  +A  LR +I ++Q    S   
Sbjct: 417 QHVSHLMDSVSRSSDLVCRSGGEEFVLLLPETGLEAATQVAERLRGLISHTQTPTGS--- 473

Query: 216 IHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
             +TIS G+A        +  ++  AD+ALY AK++GRNRVV 
Sbjct: 474 -FVTISTGVAHWPGSASSVPAVLKLADEALYRAKRNGRNRVVV 515


>gi|123443225|ref|YP_001007199.1| diguanylate cyclase/phosphodiesterase domain-containing protein
           [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122090186|emb|CAL13049.1| putative diguanylate cyclase/phosphodiesterase domain 1 protein
           [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 350

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 16/229 (6%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
           IA  +  A IF       PF      L     L +I+I  SLL G ++    K L  +  
Sbjct: 130 IACSLLTAWIFNL-----PFKPETSPLQVYACLPMITIYPSLL-GLVTYRTAKRLAENKE 183

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            + ++S  D L+GL N   +   L         Y    S++  DID FK IND FGH VG
Sbjct: 184 ELLRISVRDGLTGLYNRRHWEHQLHNQFDSCRRYQHGASLILLDIDNFKSINDTFGHAVG 243

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+ I  L+++L++       VGR GG+EF A    ++ ++   +   +++ + +     +
Sbjct: 244 DEAITVLAEELLLGLRAIDIVGRYGGDEFGAILPNTTAEQTREVLMRIQERLADLVF--T 301

Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
             P + + +SAGIA+  H        +  AD ALY+AK +GRNR+   S
Sbjct: 302 QAPPLQLRVSAGIADYRHDMINYQQWLKAADSALYLAKDNGRNRIELAS 350


>gi|78484454|ref|YP_390379.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78362740|gb|ABB40705.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2]
          Length = 461

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           +++  +++ ID L+ + N    +  L             LS+   DID+FK +ND +GH 
Sbjct: 284 HSKFQKMAAIDSLTAIYNRRFGMDRLREDFSRAVREQSSLSLAMVDIDHFKSVNDTYGHL 343

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGDK I  ++  +         V R GGEEF     G+S   A  +   +R  ++++   
Sbjct: 344 VGDKAIKLIATIIKKTLREGDIVVRYGGEEFLMILHGASSTNARNVCERIRHQVKDT-FF 402

Query: 210 ISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCF 258
                 I +T+S GIA    ++      +I+ ADQALY AK+ GRNRVV F
Sbjct: 403 KEGNQQIQLTVSIGIAAYPEQQAGDEMALIHMADQALYYAKEGGRNRVVPF 453


>gi|120598163|ref|YP_962737.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|120558256|gb|ABM24183.1| diguanylate cyclase [Shewanella sp. W3-18-1]
          Length = 578

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 26/244 (10%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENL-----SLVIIS---------ITISLL 81
           + F+  +     ++ F+I LT ++ ++  +++ +     ++  I+         IT +L 
Sbjct: 324 TAFVLLIFCGGVLYCFFIWLTSWHFIDKGIIKPVIATRDAMDAIANEKLDTPMPITDNLE 383

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFF 134
           L  +  S+   L     ++  ++  D L+G  N     + +         +   LSIV F
Sbjct: 384 LQQMVNSLAT-LKTYAAQVKAMAETDGLTGCYNRRYLDNQIEKELLYANDHQVPLSIVMF 442

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           DID FKQ ND +GH +GD+ +  + +    +       + R GGEEF         ++A 
Sbjct: 443 DIDNFKQFNDRYGHVIGDQCLKQIVNAAKSILQRPTDTLARYGGEEFMILLPSRHLEDAY 502

Query: 194 ILANDLRKIIENSQINISSGPSIHI-TISAGIAERCHKEPIST--IIYRADQALYVAKKS 250
            +A  LR+ I + +I     P   I TISAGI      EP+ T  +I RAD+ALY AK +
Sbjct: 503 KIAEHLRETIIDLKIPHEDSPHAGIVTISAGITCWHPPEPLDTNSLIKRADEALYHAKLT 562

Query: 251 GRNR 254
           GRNR
Sbjct: 563 GRNR 566


>gi|300718335|ref|YP_003743138.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Erwinia
           billingiae Eb661]
 gi|299064171|emb|CAX61291.1| Periplasmic sensor diguanylate cyclase/phosphodiesterase [Erwinia
           billingiae Eb661]
          Length = 717

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 105/232 (45%), Gaps = 22/232 (9%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIIS-ITISLLLGYISGSI----------LKELFI 95
           NI + Y+   P      +L+    LV+++ + I+L+   ++  +          +++L  
Sbjct: 229 NIPVSYVSWQPMRPGSQMLMVTGPLVLLAMLAITLMCIKMTRRLWTSSLKLSESMQKLEA 288

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148
           S  +  QL+  D L+GL N +A    L           E + ++  D+D FK IND +GH
Sbjct: 289 SEAQAQQLALHDVLTGLPNRAAMEQQLTQRLSNLSAEGENIGLLLLDLDRFKMINDTYGH 348

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD +I  +  +L  +      VGRLGG+EF      +  Q+   +    ++II     
Sbjct: 349 HTGDDLIVEIGQRLSALLRPEDAVGRLGGDEFVVVV--NHLQDDRQITALCQQIIACLTT 406

Query: 209 NIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            I+  G  + + +S GIA    H      ++ +AD ALY AK  GR R   F
Sbjct: 407 PITLQGNRLWVGVSIGIALAPQHGTERQELMRKADIALYAAKAEGRGRYHMF 458


>gi|254447061|ref|ZP_05060528.1| response regulator receiver protein [gamma proteobacterium
           HTCC5015]
 gi|198263200|gb|EDY87478.1| response regulator receiver protein [gamma proteobacterium
           HTCC5015]
          Length = 430

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           +L    +++  ++  D L+GL N       L     +       +S++  D+D FK  ND
Sbjct: 250 QLSNVNDQLQHMATTDPLTGLYNRREMERRLQEEWRRGARSDHFISVMLIDVDDFKAYND 309

Query: 145 NFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           ++GH  GD  +  L       F      V R GGEEF      +  + A  LA  L   +
Sbjct: 310 HYGHQAGDSCLTQLGTLFGGAFQRASDCVARYGGEEFIVLLPETDAEAAQKLAEKLCHKV 369

Query: 204 ENSQINISSGPSI-HITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + +I  +   +   IT+S G A     H+     +I  AD+ALY AK+ GRN+VV 
Sbjct: 370 FDQRIPHTHARAADRITVSIGAATAQSHHEGHYEHLIKAADEALYQAKEQGRNQVVM 426


>gi|162451174|ref|YP_001613541.1| GGDEF domain-containing protein [Sorangium cellulosum 'So ce 56']
 gi|161161756|emb|CAN93061.1| GGDEF domain protein [Sorangium cellulosum 'So ce 56']
          Length = 298

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 10/169 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           +  I +L   D L+ + N  +F  +L         Y+  L+++ FDID+FK IND  GH 
Sbjct: 131 HEEIYRLMTFDGLTQVHNKRSFEVALEREVSRACRYHRHLALIMFDIDHFKNINDTRGHL 190

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++            + R+GGEEFA      +   A ++A  LR ++E +   
Sbjct: 191 TGDAVLRQMAALAAANVRRDDILARVGGEEFALLVPEIAVDSARLVAEKLRALVERTPFR 250

Query: 210 ISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
              G  + +T S G+A      P+S   +  RAD+ LY AKK+GRNRV+
Sbjct: 251 FEDG-EVAVTASFGVAGVTPDAPVSPMELYRRADERLYHAKKAGRNRVM 298


>gi|158333740|ref|YP_001514912.1| diguanylate cyclase/phosphodiesterase [Acaryochloris marina
           MBIC11017]
 gi|158303981|gb|ABW25598.1| diguanylate cyclase/phosphodiesterase with GAF domain
           [Acaryochloris marina MBIC11017]
          Length = 787

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 21/197 (10%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----------------L 129
            SI  E   +  ++ Q +  D L+GL +   F   L    ++                  
Sbjct: 320 ASIAMEGHRTAEQLKQKALFDNLTGLPSRDYFYEQLQRKLQQVQRQQLEGYSRQAELCHF 379

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SS 188
           +I+F D+D+FK +ND+ GH VGD+++  ++ QL         + RLGG+EFA    G  +
Sbjct: 380 AILFLDVDHFKLVNDSLGHSVGDQLLVAIAQQLKESLRPQDLLARLGGDEFAILLDGVVN 439

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVA 247
            Q+A  +   +++ +   +    +   +  ++S GI       +    ++  AD A+Y A
Sbjct: 440 HQQAHKIVQRIQRSLA--KPLKLNQQEVFTSVSIGITHSTSLYQHPEELLRDADTAMYRA 497

Query: 248 KKSGRNRVVCFSDIENN 264
           K  GR   V F +  + 
Sbjct: 498 KAHGRGGYVVFDETMHK 514


>gi|138895220|ref|YP_001125673.1| sensory box protein [Geobacillus thermodenitrificans NG80-2]
 gi|134266733|gb|ABO66928.1| Sensory box protein [Geobacillus thermodenitrificans NG80-2]
          Length = 437

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 12/187 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            + E      ++  L+  D L+G  N   F       I      N++L+IV+ D+D+FK+
Sbjct: 253 DVTERVHYEEQLKYLAFHDALTGFPNRRLFLDVVRESIEEAKQTNDQLAIVYIDMDHFKE 312

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND FGH +GD+++   + ++           R+GG+EF     G  ++ +       L 
Sbjct: 313 VNDTFGHDMGDQLLKRFAQRVKENIEPNAIPCRMGGDEFLLLLRGVMNDLDIEKKVYKLH 372

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + ++  +    +G  I +T S GIA    H      +I  ADQALY AK   RN    +S
Sbjct: 373 QSMQ--KPFFINGHKIVVTTSIGIAIYPWHGSTAKELILHADQALYRAKAK-RNHYQFYS 429

Query: 260 DIENNTC 266
                  
Sbjct: 430 QEAKQAA 436


>gi|90023288|ref|YP_529115.1| formamidopyrimidine-DNA glycolase [Saccharophagus degradans 2-40]
 gi|89952888|gb|ABD82903.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 435

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 14/234 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
           F    +    +  +I  F++  +  Y +  ++       I +  ++ L         +EL
Sbjct: 209 FVGPLVPRYAWYLSILGFWLAASFIYLIARLIKLYRRNKIFARVVTDL-----SKTNQEL 263

Query: 94  FISYNRISQLSRIDCLSGLLNHSA----FISSLGSYN--EKLSIVFFDIDYFKQINDNFG 147
                    LS  D L+G+ N       + + L S N   K+S++  DID+FK+IND  G
Sbjct: 264 ADQKEHFRVLSTNDALTGIRNRHGVKLSYDAMLQSANPDTKISVILIDIDHFKRINDRRG 323

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD+V++  SD L         VGR GGEEF   +  ++  +A +LA  +R  + N+ 
Sbjct: 324 HQMGDEVLSQFSDLLRRNTRENDIVGRWGGEEFIVVSAHTNLNQAELLAEKIRTTVSNTA 383

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC-FSD 260
             +     I +TIS G+ E    E +   + RAD+ LY AK+ GRN  V  F+D
Sbjct: 384 --LGDNKPIMVTISCGVTEIQRPESLDAALARADKCLYSAKRGGRNCTVAQFND 435


>gi|51246057|ref|YP_065941.1| hypothetical protein DP2205 [Desulfotalea psychrophila LSv54]
 gi|50877094|emb|CAG36934.1| hypothetical protein DP2205 [Desulfotalea psychrophila LSv54]
          Length = 516

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 91/182 (50%), Gaps = 12/182 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
           + +EL     ++  L+ ID L+   NH  F ++L     +       +S++ FDID FK+
Sbjct: 328 LTEELAKKNRQLETLANIDGLTNCYNHRYFQNALDQELSRSSRNSLAISLIMFDIDNFKR 387

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            ND++GH  GD ++  L+  +         + R GGEEF      + +++A I+A  +R 
Sbjct: 388 FNDSYGHQAGDFILCELTRLIQEQIRKDDVLARYGGEEFVIILPETEKEDALIVAEKVRH 447

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRVVC 257
             E      +   +  ITIS G+A     +      ++ I + D ALY AK++GRN+VV 
Sbjct: 448 ACEEHSFQ-NIHKTHQITISLGVATEHSAQISPLNKTSFIDKTDLALYSAKENGRNKVVV 506

Query: 258 FS 259
           +S
Sbjct: 507 YS 508


>gi|15966662|ref|NP_387015.1| hypothetical protein SMc03178 [Sinorhizobium meliloti 1021]
 gi|15075934|emb|CAC47488.1| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021]
          Length = 882

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 81/176 (46%), Gaps = 11/176 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDN 145
           EL  + +R+   +  D L+GL N       L           K+SI   D+D FKQIND 
Sbjct: 445 ELEAARHRMEFNALHDPLTGLPNRRFLDQILFDRSRRADAKAKISIFHIDLDRFKQINDT 504

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD+++   +  L        FV R+GG+EF          E A LA+ +   IE 
Sbjct: 505 MGHAAGDEILKHAASLLRDNARQDDFVARIGGDEFVIIRASGGCDEDAALASRV---IEA 561

Query: 206 SQINI-SSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             + +        I +S GIA +    + +S ++  AD ALY AK+ GRNR   F+
Sbjct: 562 MSVPVRYEDQECRIGVSIGIAAQTDAADDLSQVLVNADIALYEAKRRGRNRHETFT 617


>gi|95930722|ref|ZP_01313455.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95133202|gb|EAT14868.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 637

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/189 (30%), Positives = 86/189 (45%), Gaps = 10/189 (5%)

Query: 83  GYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
            YI  S+ + E     N + + S  D ++GL N        G          + + ++  
Sbjct: 444 AYIKQSLSVLEAKRLMNTLRESSLRDPMTGLFNRRFLQDQAGHLIAGTLRRKKNIGLLMC 503

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FKQ+ND +GH  GD+V+   S  +         V R GGEEF          +A  
Sbjct: 504 DIDFFKQVNDQYGHDAGDQVLKETSAIIQKSVRESDVVVRFGGEEFLVILTDIEAGDAMS 563

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           +A  +R  IE+ ++ +     I  TIS G++E     E     I  AD ALY AK++GRN
Sbjct: 564 VAEKIRSNIED-KVFMVGPEKIRKTISLGVSEYPGDSEGFWQSIKYADVALYRAKETGRN 622

Query: 254 RVVCFSDIE 262
           R + F +  
Sbjct: 623 RALRFEESM 631


>gi|325290110|ref|YP_004266291.1| diguanylate cyclase/phosphodiesterase [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324965511|gb|ADY56290.1| diguanylate cyclase/phosphodiesterase [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 615

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 59/190 (31%), Positives = 92/190 (48%), Gaps = 10/190 (5%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEK 128
           +T S L+  I+G  + E+    N++++    D L+   N       L        + NE 
Sbjct: 426 MTRSDLIFSINGKSITEINRIVNKMNEEMLKDSLTNTYNRRYIEERLLVDIFNASNQNEP 485

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGS 187
           +S++  DIDYFK+IND +GH  GD V+   +  +         ++ R GGEEF      S
Sbjct: 486 ISVILADIDYFKKINDTYGHLAGDHVLREFAKIIKQHIRKNTDWIARYGGEEFLIVLSDS 545

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYV 246
           +E  A  +A  +R+ +E ++I   +  +I IT S G       K     +I  AD+ LY 
Sbjct: 546 NENIAYRVAEKVRQAVEKARIRY-NNKNICITASFGTYTLNSEKMTYEQLIDNADKNLYR 604

Query: 247 AKKSGRNRVV 256
           AK SGRN+ V
Sbjct: 605 AKNSGRNKTV 614


>gi|270158812|ref|ZP_06187469.1| response regulator diguanylate cyclase (GGDEF) domain-containing
           protein [Legionella longbeachae D-4968]
 gi|269990837|gb|EEZ97091.1| response regulator diguanylate cyclase (GGDEF) domain-containing
           protein [Legionella longbeachae D-4968]
          Length = 481

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 93/168 (55%), Gaps = 8/168 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           ++     D L+GLLNHS+ ++ L          +  LS V  DID FK IND +GHP GD
Sbjct: 310 LNYYMTTDSLTGLLNHSSVLNRLNIEITRAKQQDSPLSFVMIDIDNFKLINDTYGHPFGD 369

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            VI  L+  L++       +GR GGEEF     G++ + +  + N+LR    N    ++ 
Sbjct: 370 VVIKKLASMLMMSLRNQDIIGRYGGEEFVLILPGANLENSQKICNNLRLQFSNHTFTVND 429

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              +H+TIS GI+   H    + I+  ADQALY AK++G+N+VV +S+
Sbjct: 430 -HQVHVTISIGISSLTHSYDFNDIVNYADQALYKAKQNGKNQVVVYSE 476


>gi|266624366|ref|ZP_06117301.1| putative diguanylate cyclase [Clostridium hathewayi DSM 13479]
 gi|288863780|gb|EFC96078.1| putative diguanylate cyclase [Clostridium hathewayi DSM 13479]
          Length = 653

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 90/204 (44%), Gaps = 17/204 (8%)

Query: 73  IISITISLLLGYISG--------SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
            ++ TISLL   +SG          + E       +   S  D L+GL N       +  
Sbjct: 444 WMTCTISLLTEPVSGNPVAFAYVRDVDEETKRKMELLYSSERDPLTGLYNRRNIEEKVEQ 503

Query: 125 ---YNEKLS-IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              + + LS ++  D+D FK+IND +GH  GD V+  ++  L   F +   + R GG+EF
Sbjct: 504 ALKHEDSLSCLMMLDLDGFKEINDRYGHQEGDSVLKKMARILSGAFRSDDLIARFGGDEF 563

Query: 181 AAAALGSSEQEAAIL-ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIY 238
                    +E A   A ++R+ +    +    G    ++IS GIA           +  
Sbjct: 564 VVFLERIPNRECASFRAEEVRRQVYALTM---DGEDSIVSISIGIAFSPQDGNTFELLYR 620

Query: 239 RADQALYVAKKSGRNRVVCFSDIE 262
            AD+ALY AK  G+N++  + + E
Sbjct: 621 HADEALYSAKGRGKNQIAFYGEEE 644


>gi|288549606|ref|ZP_05967561.2| putative GGDEF domain protein [Enterobacter cancerogenus ATCC
           35316]
 gi|288318532|gb|EFC57470.1| putative GGDEF domain protein [Enterobacter cancerogenus ATCC
           35316]
          Length = 349

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 66/261 (25%), Positives = 112/261 (42%), Gaps = 16/261 (6%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL 69
           S WL     L    P   ++  +   +++      +A +   +I L P   +      NL
Sbjct: 88  SYWLIAVAQLPHAWPVYVILMLAGMTALYFYPSGLLAFLLPLWIAL-PVASIALNHGINL 146

Query: 70  SLVIISITISLLL---GYISGSILKELFISYN-------RISQLSRIDCLSGLLNHSAFI 119
              +I    +L+L     I     +E +           R+  L+ +D L+   N  A  
Sbjct: 147 RFAVIWGVFTLILVCGRVILHRWFEEAWRRNQQNQRLILRLDALAHLDALTQTANRRAME 206

Query: 120 SSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRL 175
           + L    E+    S++  D+D+FK+ ND +GH  GD  +  ++  L          V R 
Sbjct: 207 TLLEDATERKKAFSLIMLDVDFFKRYNDTYGHQAGDVCLTSVAQVLKQSVRTPNDVVSRY 266

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEPIS 234
           GGEEF         + A  +A  +++ +  + I  S S  S ++T+S GIAE       +
Sbjct: 267 GGEEFVVILFDCPLRGAEQVALRIQEKLRAAAIPHSASNASEYVTVSMGIAEMAEGLAGT 326

Query: 235 TIIYRADQALYVAKKSGRNRV 255
            ++ RAD ALY AK++GR+R 
Sbjct: 327 ELLARADAALYRAKEAGRDRW 347


>gi|225628693|ref|ZP_03786727.1| GAF/GGDEF domain protein [Brucella ceti str. Cudo]
 gi|260167014|ref|ZP_05753825.1| GAF/GGDEF domain protein [Brucella sp. F5/99]
 gi|225616539|gb|EEH13587.1| GAF/GGDEF domain protein [Brucella ceti str. Cudo]
          Length = 391

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 91/192 (47%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS--- 130
           L++G I+     I  +   +  R+   +  D L+ L N       ++   S  + LS   
Sbjct: 197 LMVGQIAVELSMIAVDTAQTQERLVSQAMHDDLTQLPNRRYIGKLLTQKKSARDGLSRDG 256

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SS 188
            ++  D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF     G +S
Sbjct: 257 FLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGDTS 316

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++  I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK
Sbjct: 317 KEQTDIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAK 375

Query: 249 KSGRNRVVCFSD 260
             G+NR   F +
Sbjct: 376 SKGKNRFEYFEE 387


>gi|326319467|ref|YP_004237139.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323376303|gb|ADX48572.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 332

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 6/176 (3%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIND 144
           L+EL    ++  + +  D L+GL N    +  L         + +++   DID+FK +ND
Sbjct: 143 LRELRQERDKAMKSALSDELTGLSNRRYAMDFLHQKLGPNKAQAMAVAVIDIDHFKAVND 202

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD V+   + +L    G    V R+GGEEF     G+    A  +   L   ++
Sbjct: 203 RFGHAGGDLVLKDFAARLAEAAGRDDMVARIGGEEFLLVLQGARTLGADSVLRCLGASLD 262

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                +   P    + SAG+A     E +  ++ RAD+ALY AK++GRNRVV  ++
Sbjct: 263 TVS-PLPEAPEFRYSCSAGVALVRPGETVGEVLRRADEALYQAKRAGRNRVVIHAE 317


>gi|170691222|ref|ZP_02882387.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           graminis C4D1M]
 gi|170143427|gb|EDT11590.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           graminis C4D1M]
          Length = 975

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           +EL  +  ++   +  D L+GL N    +  LG+         ++L ++F D+D FK +N
Sbjct: 526 RELDEANAQLWHENFHDALTGLPNRRYLLERLGAEWTRHRDAGQQLVVMFLDLDRFKVVN 585

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GD+++   + +L         + RLGG+EFA  +  +S ++A  LA  +    
Sbjct: 586 DSLGHHFGDQLLVSAATRLRDCLADKCMLARLGGDEFAILSAEASVEDAIELAERILSAF 645

Query: 204 ENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +   +I        + S GI           + ++  AD A+Y AK  GR+  V F+
Sbjct: 646 -DVPFSIGDHVVFS-SCSIGIVSADDDFHGEPADLLRDADTAMYRAKNGGRDSYVVFN 701


>gi|83594467|ref|YP_428219.1| diguanylate cyclase/phosphodiesterase [Rhodospirillum rubrum ATCC
           11170]
 gi|83577381|gb|ABC23932.1| diguanylate cyclase/phosphodiesterase [Rhodospirillum rubrum ATCC
           11170]
          Length = 855

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 12/189 (6%)

Query: 84  YISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFD 135
           Y++  + + +       I   +  D L+ L N    +  L            ++ ++F D
Sbjct: 392 YVAAITDITKRKRDEEHIRFQANFDMLTHLPNRHLIMDRLEQAMHQAQRTGRQVCVMFLD 451

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AI 194
           +D FKQIND++GH  GD+V+   + +L         VGRLGG+EF        +Q A A 
Sbjct: 452 LDRFKQINDSYGHSAGDEVLKLTARRLRNCVRISDSVGRLGGDEFIVILSNVEDQHAGAY 511

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           +A  +  +   S+     G  +    S GI     H E    ++  AD A+Y AK+ G  
Sbjct: 512 IAEKI--LYSLSEPFPIGGTEVFCIPSVGITYFPDHGETAPDLLRNADVAMYHAKQGGER 569

Query: 254 RVVCFSDIE 262
           R   F+   
Sbjct: 570 RYAIFTPDM 578


>gi|148258851|ref|YP_001243436.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Bradyrhizobium sp. BTAi1]
 gi|146411024|gb|ABQ39530.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bradyrhizobium sp. BTAi1]
          Length = 1047

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/219 (26%), Positives = 93/219 (42%), Gaps = 12/219 (5%)

Query: 56  TPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH 115
           TP  GL YI    + +         L+  I  +   E  ++  RI+ L+  D L+ L N 
Sbjct: 571 TPGLGLRYITSRRIVVTDDRQRPRYLINVIEDT--TERRLADERIAHLAHYDALTELPNR 628

Query: 116 SAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
             F   +    E+       ++++ DID FK IND+ GH VGD+++  ++ ++       
Sbjct: 629 VLFRERIAHEIERARHGMFFALLYLDIDEFKGINDSLGHHVGDELLRTIASRIRSCLAPE 688

Query: 170 MFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
             V RLGG+EFA    + +   E      ++ + I   +     G  +    S GIA   
Sbjct: 689 DTVARLGGDEFAVLLTMAADRDEVIAKVTEILERIR--EPYRCLGHQLSTDASIGIALAP 746

Query: 229 -HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            H   I  +   AD A+Y AK  GR+    F    + + 
Sbjct: 747 EHGVEIDQLTKHADLAMYAAKADGRHTFRFFEPAMDESA 785


>gi|152995913|ref|YP_001340748.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150836837|gb|ABR70813.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 714

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 101/226 (44%), Gaps = 21/226 (9%)

Query: 48  IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY---------ISGSILKELFISYN 98
           IF  +I +     + Y +V  + L I+ + ++L++ +         +     K++     
Sbjct: 493 IFTKWIPIKYEQDVNYKIVWQIVLAIV-VFLALMIYWNRKIAKANTLLKQAQKDIEEKNK 551

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
            +++L+  D L+ L N       + +  +K         +   DID+FK++ND +GH  G
Sbjct: 552 ELNRLALTDNLTTLFNRRKLEELIQAEIDKGYHVDNSFCLSILDIDHFKEVNDKYGHQRG 611

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++  L        +VGR GGEEF      SS  +  ++   +R  I        
Sbjct: 612 DSVLVEIARVLKDSLRITDYVGRYGGEEFIIIFPESSIADVKLIIEGVRLKIAQYDFEGV 671

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                  T S G+      + I T++ RAD ALY AK+SGRNRVV 
Sbjct: 672 EQK----TASFGLTAFKAGDTIETVVKRADNALYEAKESGRNRVVV 713


>gi|90424616|ref|YP_532986.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
 gi|90106630|gb|ABD88667.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
          Length = 823

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 11/192 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
            ++   + E   +  +I+ ++  D L+ L N  ++   L          N K++++  D+
Sbjct: 374 LVAVVDITERRKAEAKIAFMAHHDGLTNLPNRGSYQEHLHQALELSRRCNSKVAVLCVDL 433

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAIL 195
           D FK +ND+FGHP GD+++  ++D+L    G    V RLGG+EFA       S  EA+  
Sbjct: 434 DLFKNVNDSFGHPTGDRLLQKVADRLRQQVGGNDLVARLGGDEFAIVLGAINSPNEASDF 493

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A  L +I+  S      GP + I  S GIA      +    ++  AD ALY AK  G   
Sbjct: 494 AAKLIEIL--SVPYDMDGPEVVIGASIGIALSPGDGDDGEELLRNADMALYRAKAEGGGT 551

Query: 255 VVCFSDIENNTC 266
              F    +   
Sbjct: 552 HHFFEREMDRQA 563


>gi|95928296|ref|ZP_01311044.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95135567|gb|EAT17218.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 370

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 15/177 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           +      I++L+  D L+G  N   F       I     Y + LS++  DID+FK IND+
Sbjct: 191 IKKRNAEIAELAVRDSLTGSFNRGYFNETFPGAIRRAQRYQQSLSLIMCDIDHFKLINDH 250

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD+VI  ++  L         ++ R GGEEF      ++ + A ++A  +R+ I 
Sbjct: 251 YGHQTGDRVIKSVAQGLAQSLRQGVDWLARYGGEEFVIVLPETNLEGALVVAERMRRSIA 310

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTI-----IYRADQALYVAKKSGRNRVV 256
           + +I      SI +T S G+A  C  E  S +     I  AD+ LY AKK GRN   
Sbjct: 311 DQEIAC-DPQSIRLTASFGVA-GCDPEHASMLTGNGMIAAADRCLYQAKKEGRNCCC 365


>gi|254521781|ref|ZP_05133836.1| diguanylate cyclase [Stenotrophomonas sp. SKA14]
 gi|219719372|gb|EED37897.1| diguanylate cyclase [Stenotrophomonas sp. SKA14]
          Length = 355

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 99/225 (44%), Gaps = 17/225 (7%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL----LGYISGSILKELFI 95
           AT+  +    + +  L    G  Y  V +   +++S+    +    L  +S  + + +  
Sbjct: 126 ATLALVLGFAITWWAL----GFPYQPVTSQRTIVLSVPFLFVYGIGLSILSWQLARRVKS 181

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGH 148
              ++ +LSR+D L  L N    I       +K         ++  D+D FK+IND+ GH
Sbjct: 182 QNRQLQRLSRMDPLVELANRGFLILRAQQALDKAQGQGGFACLLMLDVDDFKRINDSHGH 241

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+V+  ++  L           RLGG+EF       +  +A  +A  +R  +   + 
Sbjct: 242 RAGDEVLRHIASTLRAFARPGDTPARLGGDEFVVLLHDCAPVDAMHVAERVR--LHLLEA 299

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
              + P +  ++S GIA       +   + +AD+ALY AK+ G+N
Sbjct: 300 ARQATPGVEFSVSIGIAATPRGGSVEDWLAQADRALYHAKRQGKN 344


>gi|54309271|ref|YP_130291.1| hypothetical protein PBPRA2087 [Photobacterium profundum SS9]
 gi|46913703|emb|CAG20489.1| hypothetical protein PBPRA2087 [Photobacterium profundum SS9]
          Length = 1053

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 87/186 (46%), Gaps = 11/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           +G  + E  +  +++ +L+  D L+ L N    +  +             + +   D+DY
Sbjct: 600 TGKDITERVLFESKLHKLAHYDLLTELPNRLLLLQHIEQAITNAEEMKTSVVVFNIDLDY 659

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILAN 197
           FK+IND+ GH VGDKV+  ++ ++         + RLGG+EFA      +S Q  A LA 
Sbjct: 660 FKKINDSLGHDVGDKVLITIAKRITRSLRDEDVLARLGGDEFAILIQSDTSSQSIATLAE 719

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            +   I  S ++I    S+ IT S GIA           ++  +D ALY AK  GRNR  
Sbjct: 720 RIINNICAS-LSIEE-KSLSITASMGIAVYPENSVDSDALLKNSDIALYHAKDQGRNRYC 777

Query: 257 CFSDIE 262
            F+   
Sbjct: 778 FFTPQM 783


>gi|261212996|ref|ZP_05927280.1| GGDEF family protein [Vibrio sp. RC341]
 gi|260838061|gb|EEX64738.1| GGDEF family protein [Vibrio sp. RC341]
          Length = 338

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 66/220 (30%), Positives = 108/220 (49%), Gaps = 21/220 (9%)

Query: 58  FYGLEYILVENLSLVIISITISLLLG----------YISGSI------LKELFISYNRIS 101
           F  LE +  +NLS+  +   I  L+           +++  +      +  L     ++ 
Sbjct: 117 FKELERVEQDNLSIEEVMTVIRQLVSESKDIRHSTNFLNNQLNAATQEISLLKEQLAKVQ 176

Query: 102 QLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           + +  D LSGL N  AF     +L      +S++  DID+FK +ND +GH  GD++I  +
Sbjct: 177 KDALFDSLSGLYNRRAFDGDMFTLIHAGHPVSLIMLDIDHFKILNDTYGHLFGDQIIRAI 236

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217
           + +L  +    +   R GGEEFA  A   S + A   A  +R+ IE   + +  SG S+ 
Sbjct: 237 AKRLQSLCRDGVTAYRYGGEEFALIAPRKSMRIARQFAESVRRSIEKLTVKDRRSGQSVG 296

Query: 218 -ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            IT S G+ E+   + + +++ RAD  LY AK  GRNRV+
Sbjct: 297 SITASFGVVEKVDGDSLESLVERADALLYDAKNLGRNRVM 336


>gi|207723947|ref|YP_002254345.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           MolK2]
 gi|206589154|emb|CAQ36116.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           MolK2]
          Length = 532

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 8/164 (4%)

Query: 99  RISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R++  +  D L+GL N       +  L   ++  S+V  D+D+FK+IND  GH VGD+V+
Sbjct: 351 RLNHEALTDPLTGLYNRRGVADALRLLAGRHQPFSVVTLDVDHFKRINDRDGHDVGDQVL 410

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  +          GR+GGEEF      ++ + A   A  LR+ +E           
Sbjct: 411 KHIAALIREQARHDDITGRIGGEEFILLLPDATPEGAFKTAERLRRAVEARPNPTGQ--- 467

Query: 216 IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             +T+S G+A      E +  ++  +D ALY AK+SGRNR V +
Sbjct: 468 -VVTVSLGMAHYPGASEEVDAVLKLSDLALYQAKRSGRNRTVLY 510


>gi|167622419|ref|YP_001672713.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Shewanella halifaxensis HAW-EB4]
 gi|167352441|gb|ABZ75054.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella halifaxensis HAW-EB4]
          Length = 1487

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 11/191 (5%)

Query: 85   ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
            +  S + E   +   + +L+  D L+GL N S F S L             L+++F D+D
Sbjct: 1035 VVFSDITERKRTEADLRRLANYDVLTGLPNRSLFSSKLSQSVYQAERDGGNLALLFLDLD 1094

Query: 138  YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILA 196
             FK +ND++GH +GD ++   S++L  +      + R GG+EF      + + +    L 
Sbjct: 1095 RFKHVNDSYGHSMGDALLVEASNRLQALISDEHVLCRFGGDEFVILLRNNPDIDVINHLC 1154

Query: 197  NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
            + L   IE     +  G   +I+ S G++          ++I  AD A+Y AK+ G+   
Sbjct: 1155 DALLASIE-LPFELY-GREFYISTSIGVSLWPEDAKQPESLIKNADLAMYHAKEEGKGNF 1212

Query: 256  VCFSDIENNTC 266
              +S+  N   
Sbjct: 1213 KYYSEERNAEA 1223


>gi|217975059|ref|YP_002359810.1| GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella baltica OS223]
 gi|217500194|gb|ACK48387.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           baltica OS223]
          Length = 882

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 17/184 (9%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--------EKLSIVFFDIDYFKQ 141
           +++      ++   ++ D L+GL N + F+  L            E+ +++F D+D FKQ
Sbjct: 438 IQQRRSMEAKLVHDAKHDALTGLPNRAMFMERLSQAIKHVRRHSLEQFALLFIDLDRFKQ 497

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-----LGSSEQEAAILA 196
           IND  GH  GDK +   + +L         + RLGG+EF         +  +   +  + 
Sbjct: 498 INDTMGHLEGDKFLIETASRLKSCIRDNDTLARLGGDEFVILLDSINNINDARDVSERVI 557

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             + +      +  +SG SI ITIS     +   +   +++  AD A+Y AK +G+   V
Sbjct: 558 QKISQPYRLGTMEFNSGASIGITIS----GKHKVDTSESMLRNADTAMYQAKANGKGCYV 613

Query: 257 CFSD 260
            F D
Sbjct: 614 IFDD 617


>gi|126731499|ref|ZP_01747305.1| two component diguanylate cyclase [Sagittula stellata E-37]
 gi|126708035|gb|EBA07095.1| two component diguanylate cyclase [Sagittula stellata E-37]
          Length = 507

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 76/167 (45%), Gaps = 9/167 (5%)

Query: 102 QLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           + +  D L+GL N                      +++  D+DYFKQ+ND++GH  GD V
Sbjct: 291 RAAVTDPLTGLYNRRYALPHISRLADRAERSRRPYALLLADLDYFKQVNDDYGHAAGDAV 350

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  L+ +L         + R GGEEF  A   +    A + A  L  ++  + I++  G 
Sbjct: 351 LVTLAQRLTDNLRAADLIARWGGEEFLVAMPDTDRTAARLTAGRLCSLMAKNPISLPDGR 410

Query: 215 SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I +T+S G+A       E    +I  AD ALY AK  GRN VV   
Sbjct: 411 RIIVTLSIGVAIGVSRSAETPVDLISSADSALYAAKNGGRNTVVMAD 457


>gi|319426571|gb|ADV54645.1| bifunctional diguanylate cyclase with GAF and PAS sensory
           domains/signaling protein with EAL domain protein
           [Shewanella putrefaciens 200]
          Length = 747

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 9/187 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQ 141
           S + E   +   I   +  D L+GL N +A    + +           S +  D+D FKQ
Sbjct: 299 SDISERKKAAQLIKYQANNDSLTGLANRNALFRQIQTLITSDCLTPGFSFMLMDLDNFKQ 358

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLR 200
           +ND +GH  GD ++  +  Q+     + +   RLGG+EFA    G   Q+A   LA  + 
Sbjct: 359 VNDTYGHDKGDMLLLQVVGQIKTCLDSSIMFARLGGDEFALLLPGVVTQKALSQLAEKII 418

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           K +   +  +S    ++ ++S GIA        +  ++  ADQA+Y++K +GRNR   F+
Sbjct: 419 KNVYR-RYELSKDKGVYSSVSIGIARFPEDALNLEQLLNCADQAMYISKANGRNRYHFFT 477

Query: 260 DIENNTC 266
           +      
Sbjct: 478 EQMQQNA 484


>gi|170726877|ref|YP_001760903.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169812224|gb|ACA86808.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
          Length = 347

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 10/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L      +S +++ D L+ L N  AF   + S+       +    ++  DID+FK  ND 
Sbjct: 168 LKSEMENLSIVAQTDQLTSLFNRRAFEKEIESHMIHYKQDHSASCLLVVDIDHFKLFNDT 227

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH +GDKV+A+++  L        FV R GGEEF      +   +A  +A  +R+ I N
Sbjct: 228 HGHLIGDKVLAYVALALKKTVKGTDFVARYGGEEFVVLLPNTELNDALTVAELVRQKIAN 287

Query: 206 SQINI--SSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +++I      S+  IT+S G++   + +   +   RAD+ALY AK SGRN + 
Sbjct: 288 QKLSIGKEDKHSLGSITVSVGVSTLHNSDDRESYFIRADEALYRAKSSGRNCIC 341


>gi|296159333|ref|ZP_06842158.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Burkholderia sp. Ch1-1]
 gi|295890317|gb|EFG70110.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Burkholderia sp. Ch1-1]
          Length = 932

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 92/217 (42%), Gaps = 17/217 (7%)

Query: 64  ILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +L  +LS V IS      +G+  SG  + E   S  +I +L+  D L+ L N +  +  L
Sbjct: 437 LLWLSLSWVPISNARGDFVGFRTSGRDITERKKSEEKIRELAFYDTLTRLPNRALLLDRL 496

Query: 123 GSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     N   +++F D+D+FK +ND  GH  GD ++  ++ +L         V R+
Sbjct: 497 RESMAASRENNVCGALMFIDLDHFKTLNDTLGHDKGDLLLRHVAYRLSSSVSKGDTVARV 556

Query: 176 GGEEFAAAALGSSEQE------AAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
           GG+EF       S  +         +   +  ++  +     +G     T S G+     
Sbjct: 557 GGDEFVVVLGNLSLNKAAATAETEAVGEKILAVLGRA--YELNGVQFRSTASIGVTVFDA 614

Query: 230 KEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           ++     +  +AD A+Y +K+ GRN +  F      T
Sbjct: 615 EQTSTDELFKQADLAMYKSKERGRNAMCFFDPAMQTT 651


>gi|224825179|ref|ZP_03698285.1| diguanylate cyclase with PAS/PAC and GAF sensors [Lutiella
           nitroferrum 2002]
 gi|224602850|gb|EEG09027.1| diguanylate cyclase with PAS/PAC and GAF sensors [Lutiella
           nitroferrum 2002]
          Length = 460

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 13/180 (7%)

Query: 81  LLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
           LL ++S  I    E    + R+ Q+++ D L+ L N           ++       +LS+
Sbjct: 264 LLQFVSAQIATAIERKQLHARLQQMAQYDELTSLPNRRLLYGRLKAALARARREQGRLSL 323

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           ++ D+D FKQ+ND+FGH  GD ++  ++ +L         V R+GG+EF       +  E
Sbjct: 324 LYLDLDKFKQVNDSFGHATGDLLLQEVARRLRQCVRESDTVARIGGDEFVVLLESIALPE 383

Query: 192 -AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
            A ++A  +R  + +  +N+  G  + I  S GIA    H +    ++  AD A+Y AKK
Sbjct: 384 HAWLVAEKIRSAL-DHPLNL-DGRHLRILPSIGIALFPEHGDEEQQLLKHADDAMYRAKK 441


>gi|167588302|ref|ZP_02380690.1| diguanylate cyclase [Burkholderia ubonensis Bu]
          Length = 463

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 94/199 (47%), Gaps = 12/199 (6%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           +S  +I+     ++  ++ + L++       ++ L+R D L+GL N  A  ++L    E+
Sbjct: 262 ISASLIAALFCAVVWLLAFA-LRDNLRKQRLLTDLTRTDPLTGLRNRRALDAALSDEWER 320

Query: 129 L--------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEE 179
           L        S++F D D+FKQ ND +GH  GD  + +L++ +            R GGEE
Sbjct: 321 LRRSSSGNLSLLFIDADHFKQYNDRYGHAQGDTALRYLAECIRKHTRRRSDIAARYGGEE 380

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTII 237
           F A    + E  AA +A  +R  +E +++          T+S G A         I  + 
Sbjct: 381 FVAVLPDTDEIGAAKVAEAIRDEVERNRLPGFPDAVPPFTVSIGCATARKARPASIEALA 440

Query: 238 YRADQALYVAKKSGRNRVV 256
             AD ALY AK+ GRNRV 
Sbjct: 441 NHADSALYAAKRQGRNRVC 459


>gi|146305401|ref|YP_001185866.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas mendocina ymp]
 gi|145573602|gb|ABP83134.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas mendocina ymp]
          Length = 1254

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 52/197 (26%), Positives = 91/197 (46%), Gaps = 16/197 (8%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVF 133
           LL   S   + E       I +L+  D L+GL N    +  L    ++        +++F
Sbjct: 800 LLIRASVLDISERQRYQREIERLAYSDELTGLPNRRLLLDRLQHAMDRENREGSLGALLF 859

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA------LGS 187
            D+D+FK +ND+ GH +GD ++  ++ +L     T   + RLGG+EF            +
Sbjct: 860 IDLDHFKTVNDSLGHLIGDALLCEVTTRLARELRTEDTLARLGGDEFVVLLEALGSEPQA 919

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYV 246
             + AA +   L + ++ S   +  G  + I+ S GIA      +  + I+ +AD A+Y 
Sbjct: 920 VAEHAAAVGEKLLRGLQGS--CLIEGHELAISASIGIALHPLGLQRAADILKQADTAMYR 977

Query: 247 AKKSGRNRVVCFSDIEN 263
           AK +GRN +  F+    
Sbjct: 978 AKHAGRNALHFFAPEMQ 994


>gi|94313385|ref|YP_586594.1| diguanylate cyclase/phosphodiesterase [Cupriavidus metallidurans
           CH34]
 gi|93357237|gb|ABF11325.1| diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains)
           [Cupriavidus metallidurans CH34]
          Length = 709

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 100/214 (46%), Gaps = 13/214 (6%)

Query: 64  ILVENLSLVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           ILV  + ++ +++  S+L   L   +  +   L ++   +  L+  D L+ L N      
Sbjct: 239 ILVITICVLAVALITSVLDMRLEMRTAVLADALGVANEELEFLALHDKLTHLPNRVLLED 298

Query: 121 S-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                      ++ + +++F D+D FK +ND +GH VGD ++  ++++L     +   + 
Sbjct: 299 RFTLAIQAAARHHGRFAVLFVDLDGFKGVNDTYGHQVGDGLLVEIANRLRASVSSEDTIA 358

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           R+GG+EF         ++A ++A  L  ++   +    +G  +H++ S GIA      + 
Sbjct: 359 RVGGDEFVLLVHVDEPEDAGVVAGKLIDVLR--EPANVAGHMVHVSGSIGIAIYPVDGQD 416

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              ++  AD A+Y AK SGRN    F    N+  
Sbjct: 417 QDALMTNADAAMYHAKASGRNASYFFERSMNHQA 450


>gi|237756213|ref|ZP_04584777.1| signal transduction response regulator [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691623|gb|EEP60667.1| signal transduction response regulator [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 349

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 90/173 (52%), Gaps = 8/173 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144
            L +    + Q + +D L+GL N  +F  +L    +         +++  D+D FKQIND
Sbjct: 176 RLNVELKVVKQEATLDFLTGLTNRRSFDRALNDLIKDFNEKKIPFTLILLDLDNFKQIND 235

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGHP GD V+  +S+ L         +GRLGGEEF       + +    +A  +R +IE
Sbjct: 236 KFGHPAGDLVLKEVSNLLRTYLRANTIIGRLGGEEFGIILPNVTLENGKNVAEIIRNVIE 295

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           N +I    G  I I+ S G+A+    + I TI  R D+ALY AK+ G+N+VV 
Sbjct: 296 NHEIKY-DGNVIRISASLGVAQVKEGDTIDTIYRRVDEALYQAKRDGKNKVVV 347


>gi|165927306|ref|ZP_02223138.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|166009086|ref|ZP_02229984.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|165920768|gb|EDR38016.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992425|gb|EDR44726.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar
           Antiqua str. E1979001]
          Length = 338

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 117/256 (45%), Gaps = 22/256 (8%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLLLGYI 85
           +  S+F   FI+T+    N   F +   P   +  IL++   N+  +I +I + L+   +
Sbjct: 80  LLLSLFTIFFISTIALSDNFLAFCLHTAP-SAITVILLDDFHNIFRIIFTIMLPLIGFSL 138

Query: 86  SGSILKE-----------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LS 130
              +L+            L     + S LS ID L+ L N     S L +   +      
Sbjct: 139 HHLMLRRTDNFTRKLVDHLSNEREKFSDLSMIDPLTSLYNRRGLESKLETLLSQSPGNHY 198

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  DID+FK  NDN+GH +GD+ +  +S  +     +   V R GGEEF       SE+
Sbjct: 199 VLLLDIDHFKAYNDNYGHTMGDQALVRISAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEE 258

Query: 191 EAAILANDLRKIIENSQINISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAK 248
            A  LA  +R+ +    I       +   +T+SAGI+     +  +++   AD+ALY AK
Sbjct: 259 YANQLAERVRQRVLGLDIPHVFNHKVSTTVTLSAGISPLQAYDLAASL-KAADEALYRAK 317

Query: 249 KSGRNRVVCFSDIENN 264
           ++GRN +    D  +N
Sbjct: 318 RNGRNNIEFAKDELSN 333


>gi|114776913|ref|ZP_01451956.1| two-component response regulator [Mariprofundus ferrooxydans PV-1]
 gi|114552999|gb|EAU55430.1| two-component response regulator [Mariprofundus ferrooxydans PV-1]
          Length = 479

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 94/217 (43%), Gaps = 18/217 (8%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLG-----YISGSI--LKELFISYNRISQLSRIDCL 109
           PF+    I  ++ S + +    + +       Y+ G +  + E      R+  ++  D L
Sbjct: 258 PFHAEYRIYAKDGSYLWVKDAAATVRDHDQDLYLQGVVYDISERKAYEERLMMMAHFDAL 317

Query: 110 SGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GL N + F   L         + ++ ++++ D+D FK +ND+ GH  GD ++   + +L
Sbjct: 318 TGLANRALFHDRLSQTLAYSKRHQKQFAVMYLDLDGFKAVNDHLGHQAGDNLLVQTAHRL 377

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                    V R+GG+EFA       +     ++A  L + I     ++ +G    +T+S
Sbjct: 378 RANVREVDTVARMGGDEFAIILDDVHTRDTVELVAWKLIEAISAPYEDVGAGH--QVTMS 435

Query: 222 AGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVC 257
            GIA           +I  AD A+Y AK  GRN    
Sbjct: 436 MGIAIYPEDSTSCDLLITAADNAMYRAKHGGRNCYCF 472


>gi|330808444|ref|YP_004352906.1| diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376552|gb|AEA67902.1| Putative diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 794

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 63/213 (29%), Positives = 96/213 (45%), Gaps = 14/213 (6%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           Y    P  GL ++  E     +    + L  GYIS   + +L      +  LS  D L+G
Sbjct: 586 YRVQLPLRGLRWVRGEATPEELPGGGV-LWHGYIS--DISDLKRVEEELRALSVTDALTG 642

Query: 112 LLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           + N   F   L S   +       L+++  DID+FK+IND  GH VGD+V+  +  ++  
Sbjct: 643 IRNRRYFQDRLTSEMARVERGSGGLAVIMLDIDHFKRINDQHGHAVGDRVLQAVCQRVGQ 702

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                    RLGGEEF      +  + A  LA +L + +  + I         +T S GI
Sbjct: 703 RLRRTDVFCRLGGEEFVVLCPDTDSESAYTLALELWEGLRAAPIEGVG----FVTASFGI 758

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           A     E    ++ RAD  +Y AK++GR+RV  
Sbjct: 759 ATWRIGEGADALLLRADSGVYAAKQAGRDRVEV 791


>gi|304313323|ref|YP_003812921.1| response regulator/sensory box [gamma proteobacterium HdN1]
 gi|301799056|emb|CBL47299.1| response regulator/sensory box [gamma proteobacterium HdN1]
          Length = 704

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 83/188 (44%), Gaps = 11/188 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           I    + E      +++ +++ D L+GL N + F ++L +            +++F D+D
Sbjct: 254 IVFKDITERRKIEEKLNYMAQYDALTGLGNRNLFSNALNNAIAQSRHTQNPFALLFLDLD 313

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILA 196
            FKQ+ND  GH  GD ++  ++ ++         + R+GG+EF    A  + E  A  ++
Sbjct: 314 RFKQVNDTLGHDAGDLLLKDVAGRIRNCIRDADVLCRIGGDEFTLIIAGAAIEIAAQRVS 373

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
             L   +  S   I     I++  S GI          + +I  AD A+Y AK  GRNR 
Sbjct: 374 EKLISELSRS-FEIYE-QEIYVGGSIGIVYYPEMGADANELIKNADMAMYQAKHEGRNRF 431

Query: 256 VCFSDIEN 263
             F     
Sbjct: 432 KVFDPNMR 439


>gi|300714960|ref|YP_003739763.1| sensory box protein [Erwinia billingiae Eb661]
 gi|299060796|emb|CAX57903.1| Putative sensory box protein [Erwinia billingiae Eb661]
          Length = 992

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 94/211 (44%), Gaps = 19/211 (9%)

Query: 73  IISITISLLLG--------YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           IIS T S++ G         +    + +   +  RI  ++  D L+ L N   F   L  
Sbjct: 491 IISATASIIRGNDARTNYVLLIADDVTDQRAADARIHHMAHHDNLTSLPNRVLFSQRLNE 550

Query: 125 YNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                       + +  D+D FK +ND  GH VGD ++  ++ +L  V      + R GG
Sbjct: 551 ALRADREAGKLTATLGLDLDNFKNVNDALGHQVGDDLLRAVASRLRGVLRDVDTLARNGG 610

Query: 178 EEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPIST 235
           +EF+    G + +QEA  +A+ L + +     N+  G ++ + +S GIA    +      
Sbjct: 611 DEFSIVLPGLTHQQEADAIAHRLIE-VTKLPFNV-DGHNLSVGLSIGIAIGGRELATPEQ 668

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           ++  AD ALY AK++GRNR   FS       
Sbjct: 669 LLRCADMALYEAKRNGRNRFEHFSVQMGEAA 699


>gi|260550760|ref|ZP_05824968.1| WspR [Acinetobacter sp. RUH2624]
 gi|260406266|gb|EEW99750.1| WspR [Acinetobacter sp. RUH2624]
          Length = 420

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 72/239 (30%), Positives = 114/239 (47%), Gaps = 11/239 (4%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           M+Y  +  +I +   + + N+   YI L        IL  ++S ++IS   SL L     
Sbjct: 171 MLYVGLSAAILVFVFLNLLNVNCDYIALGRALFGTCILGFSISTMLISRERSLFLNNQLA 230

Query: 88  SILKE-LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139
            I ++ L I  + +  LS+ D L+ + N   F                 L+++F DID+F
Sbjct: 231 EINEQILRIEASELLHLSQQDALTQISNRRTFDEMFDFFYYRANQEKRPLAVLFIDIDFF 290

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND +GH +GDKVI+ ++  +        FV R GGEEF      +  Q A  +A ++
Sbjct: 291 KNYNDFYGHQMGDKVISSIAAAIKNSIRHVDFVARYGGEEFVVLLPETPAQGAYAVAANI 350

Query: 200 RKIIENSQINISSG-PSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRV 255
            K IE   I  ++   S ++TIS G         +    +I+ ADQALY AK+ GRN++
Sbjct: 351 YKAIERQAIPHAASLVSKYVTISLGFTVYTGGLKMGQDKLIHAADQALYRAKQLGRNQI 409


>gi|229591727|ref|YP_002873846.1| putative signaling-related membrane protein [Pseudomonas
           fluorescens SBW25]
 gi|229363593|emb|CAY50896.1| putative signalling-related membrane protein [Pseudomonas
           fluorescens SBW25]
          Length = 820

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 15/190 (7%)

Query: 83  GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS--------YNEKL 129
           G ++G++L    ++  R     +S  +  D L+GL N   F   L          Y  + 
Sbjct: 348 GKVTGAVLVLHDMTQERQYIANLSWQATHDALTGLANRREFEFRLEQVLHPAAQQYGGRH 407

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++F D+D FK +ND  GH  GD+++  +   L         + RLGG+EF         
Sbjct: 408 ALMFLDLDQFKLVNDTCGHAAGDELLRHICALLQSDLREGDTLARLGGDEFGILLENCPA 467

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAK 248
             A  +A  LR  +++    +  G     T+S G+    H    + T +  AD A Y+AK
Sbjct: 468 AVAEKIAESLRHTVQSLHF-VWKGRPFMTTVSIGLVHLGHTPTTLETSLRAADMACYMAK 526

Query: 249 KSGRNRVVCF 258
           + GRNRV  +
Sbjct: 527 EKGRNRVQVY 536


>gi|218676105|ref|YP_002394924.1| GGDEF family protein [Vibrio splendidus LGP32]
 gi|218324373|emb|CAV25746.1| GGDEF family protein [Vibrio splendidus LGP32]
          Length = 345

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 89/176 (50%), Gaps = 5/176 (2%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQI 142
           + S + +L      + + +  D  + L N  +F   I +L    + L ++  DID+FK  
Sbjct: 168 ATSEITKLKSQLVEVQKDALFDSTTTLYNRRSFDRDIETLCEAKQPLCLILLDIDHFKNF 227

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD V+  ++ +L  +    +   R GGEEFA      S + A  LA+  R+ 
Sbjct: 228 NDTYGHLFGDMVLKGIARKLKQMCREGISAYRFGGEEFAIIVPNKSLRIARQLADTNRRS 287

Query: 203 IENSQI-NISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +E   I +  SG  +  IT S G+AE    E   ++I RAD+ LY AK  GRNRV+
Sbjct: 288 LEKLSIKDRRSGQQVGSITASFGVAELEPGESAQSLIERADKLLYEAKSLGRNRVM 343


>gi|218295102|ref|ZP_03495938.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Thermus
           aquaticus Y51MC23]
 gi|218244305|gb|EED10830.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Thermus
           aquaticus Y51MC23]
          Length = 857

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 6/175 (3%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDN 145
           +L        R++ L+  D L+GL N   F+  L    +   +L++++ D+D  K +ND 
Sbjct: 433 LLLRRMELEGRLTYLAFHDPLTGLPNRLFFLEKLAQALKEEPRLAVLYLDLDGLKLVNDL 492

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIE 204
            GH  GD+VI  ++ +L         V R GG+EF     G  + +EA  +A  L +++ 
Sbjct: 493 EGHATGDEVIRTVAARLRAAVRPRDLVARQGGDEFLILLAGLRKPEEAVQVAERLLEVVR 552

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              + +  G    +T S GIA          ++ RAD ALY AK  G++R+  + 
Sbjct: 553 -LPLPL-GGRVFRLTTSLGIALGEPGLTPGELLARADLALYRAKDEGKDRLAFYE 605


>gi|158339273|ref|YP_001520450.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158309514|gb|ABW31131.1| diguanylate cyclase (GGDEF domain), putative [Acaryochloris marina
           MBIC11017]
          Length = 394

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 69/203 (33%), Positives = 103/203 (50%), Gaps = 11/203 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI----- 119
           LVEN   + + +   L        I ++LF +  ++S L+  D L+GL N   F      
Sbjct: 189 LVENNKKLELEVQAKLHAQQNLEIINEKLFEANKKLSLLANQDALTGLANRRYFDVYLQQ 248

Query: 120 --SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLG 176
              S       LSI+  DID+FK  ND++GHP GD  +  +S  +  V G    F  R G
Sbjct: 249 VWESAQENKHPLSILICDIDFFKGYNDSYGHPEGDHCLQRVSQIIHRVAGKSEGFAARFG 308

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHITISAGIAE--RCHKEPI 233
           GEEFA     ++  ++  +A  LR  I N+++   +S  S ++T+S G+          I
Sbjct: 309 GEEFAMVLPNTNLIDSQTIAGKLRSEIHNARLPHRASTVSEYVTVSIGVTSIQFQSDGSI 368

Query: 234 STIIYRADQALYVAKKSGRNRVV 256
           + +I+RADQALY AKK GRN+ V
Sbjct: 369 NDLIHRADQALYGAKKLGRNQFV 391


>gi|313682415|ref|YP_004060153.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sulfuricurvum kujiense DSM 16994]
 gi|313155275|gb|ADR33953.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sulfuricurvum kujiense DSM 16994]
          Length = 826

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 64/263 (24%), Positives = 103/263 (39%), Gaps = 25/263 (9%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLT--------PFYGLEYILVENLSLVIISI 76
              +I    F +++I  ++F   +      L           Y    I+     L  IS 
Sbjct: 314 FVILILAITFLTLWILKILFNRGVAQPLQALMNQIEKIERHDYSHSSIIHTGDELEAISR 373

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129
           ++  L   ++      L  S  ++  LS  D L+ L N   F       I      N + 
Sbjct: 374 SVRRLASTVNER-EGALIASQKQLKYLSDTDPLTDLPNRRLFYVLLENCIEKAKHLNRRF 432

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            ++F D+D FKQ+ND FGH +GD ++  ++ +L         + R+GG+EF     G   
Sbjct: 433 GVIFLDLDQFKQVNDTFGHEIGDILLQEVALRLRQTLRDSEILARIGGDEFNILIEGFDG 492

Query: 190 -QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVA 247
            +E   +   +    +     +     I  T S GIA      + I  +I  AD A+Y +
Sbjct: 493 YEEIESIVKGILNSFDL--PFLCQDHEIRTTASIGIAIYPEDGQSIHNLIKNADMAMYRS 550

Query: 248 KKSGRNRVVCFS-----DIENNT 265
           K  GRN    F+     DIE  T
Sbjct: 551 KDKGRNGYSFFTNDLAVDIEEKT 573


>gi|330963140|gb|EGH63400.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 492

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 93/208 (44%), Gaps = 15/208 (7%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           ++   +++    SL+ + I   + L ++    L+    + + ++ L+  D L+GL N   
Sbjct: 274 WHRNAWLIGTATSLLCLGI---VWLTWLLCRELRRRHRAEDELANLAATDGLTGLDNRRQ 330

Query: 118 FIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
                           + LS++  D+D+FK  N+  GH  GD+ +  ++  +      P 
Sbjct: 331 LDEAMETEWARAQRSGKWLSLLMIDVDHFKAFNERHGHQGGDEALRRIAQAVAGTIRRPG 390

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER-- 227
             + R GGEEF      +    A ++A  +R  +E+            IT+S G+A +  
Sbjct: 391 DQLARYGGEEFVVVLPETDMNGALVIAEKIRVAVESLPRYADDEQ--PITVSIGVAAQIV 448

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRV 255
              + ++     AD+ALY AK +GRNRV
Sbjct: 449 RQGDKLTAFFGIADKALYQAKHNGRNRV 476


>gi|254429501|ref|ZP_05043208.1| GGDEF domain protein [Alcanivorax sp. DG881]
 gi|196195670|gb|EDX90629.1| GGDEF domain protein [Alcanivorax sp. DG881]
          Length = 342

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 106/263 (40%), Gaps = 23/263 (8%)

Query: 15  HEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI- 73
            E      S +  ++ F +F       ++  A   L + GL  +  +        S +I 
Sbjct: 79  RELRGAMLSIYFMVMTFGVFALDRRRMLLMAAFTLLCFTGLLIYEWINAPQQAIFSYLIG 138

Query: 74  --ISITISL-----LLGYISGSILK------ELFISYNRISQLSRIDCLSGLLNHSAFIS 120
             I +T+ L     + GYI    L+       L  +++R+S ++  D L+GL N   F+ 
Sbjct: 139 HWIILTLGLGWFIYMGGYIHNLQLRVREQRERLREAHDRLSAIAVRDDLTGLYNRRHFLE 198

Query: 121 SLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L          +  L +   D+D+FK++ND +GH  GD+V+   +    +       + 
Sbjct: 199 RLEEEMSRANRESSPLHLAIIDLDHFKRVNDTYGHHAGDEVLHRFAQLAAMGLRKSDLLA 258

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEF      +S Q        LR      +   +    +    SAG+      E  
Sbjct: 259 RYGGEEFVVLFPHTSSQACLAALERLRHSFSEQRYAFAG--ELSSAFSAGLTHYQPGESA 316

Query: 234 STIIYRADQALYVAKKSGRNRVV 256
              I RAD ALY AK  GRNR+ 
Sbjct: 317 EQFIKRADNALYEAKHLGRNRIQ 339


>gi|150377228|ref|YP_001313823.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Sinorhizobium medicae WSM419]
 gi|150031775|gb|ABR63890.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Sinorhizobium medicae WSM419]
          Length = 1071

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 58/195 (29%), Positives = 87/195 (44%), Gaps = 11/195 (5%)

Query: 78  ISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLS 130
           IS+    I+     E    ++  +++ ++R D L+GL N   F            + +++
Sbjct: 622 ISIFCRDITERRRAEEDTLLAQKQLAHMARHDMLTGLPNRMFFRECFEQALNESRHARMA 681

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSE 189
           ++  D+D FK IND  GHP GD ++  +S +L+    T   V RLGG+EFA       S 
Sbjct: 682 VLCLDLDGFKAINDTLGHPAGDVLLRQVSQRLIQSVRTTETVARLGGDEFAIIQPLAKSR 741

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAK 248
            EA  LA  L   +  S+     G +  +  S GIA           +I  AD ALY AK
Sbjct: 742 DEAFHLAQRLIDTL--SEPFSIEGAAATVGTSIGIAFAPEDGTSADELIKAADIALYSAK 799

Query: 249 KSGRNRVVCFSDIEN 263
            SGR     F    +
Sbjct: 800 SSGRGTYRLFDVAMH 814


>gi|120611590|ref|YP_971268.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
 gi|120590054|gb|ABM33494.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
          Length = 250

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 63/201 (31%), Positives = 96/201 (47%), Gaps = 8/201 (3%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
               E +L E   LV  S    L +      + ++L     ++   +  D L+G+LN +A
Sbjct: 45  LAAYERLLRETRRLVRRSDRAELEM----NQLNQQLTELAEQLHYRATHDPLTGVLNRAA 100

Query: 118 FISSLGSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            I  +    E   ++++  DID+FK++ND+FGHPVGD VI  + D+L  V      +GR+
Sbjct: 101 IIEQVNGRFETGSVALIVLDIDHFKKVNDSFGHPVGDSVIRGVVDRLKSVVPGSAQIGRV 160

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           GGEEF              +A   R+ IE     +  G    +T S G++          
Sbjct: 161 GGEEFTVLLPEEDAMACERVAEAARRAIEGFDFGLPDGS--RVTASFGVSWLPGGCVFDD 218

Query: 236 IIYRADQALYVAKKSGRNRVV 256
               AD+ALY AK++GRNRVV
Sbjct: 219 AYGLADEALYGAKRAGRNRVV 239


>gi|251771296|gb|EES51877.1| diguanylate cyclase/phosphodiesterase [Leptospirillum
           ferrodiazotrophum]
          Length = 861

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 19/218 (8%)

Query: 62  EYILVENLS------LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH 115
           E I + +LS      LV   +T  LLL  ++ +I  +       ++ L+  D L+GL N 
Sbjct: 248 EAIAISSLSAGAQDFLVKEMVTAPLLLRSVTYAI--KRKEIERSLTTLANSDTLTGLPNR 305

Query: 116 SAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            +F+  L           +   ++  D+D FK +ND +GH  GD +I  ++ +L  +   
Sbjct: 306 KSFMEQLQRSIDTGARSGDSFCLLILDLDRFKAVNDTYGHAAGDTLIREVAGRLRRLMRR 365

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAER 227
             FV RLGG+EFA     +    +  L+  + K++       S G  S+    S G A  
Sbjct: 366 ADFVARLGGDEFAIILSHTGRTGS--LSRFIEKLVLRLSPPYSIGRHSVSSEASVGAAVF 423

Query: 228 C-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
               +    ++  AD+A+Y AK SG  R   +    + 
Sbjct: 424 PFDGDSAEALVSHADRAMYRAKSSGTRRYAFYDPAMDK 461


>gi|153002492|ref|YP_001368173.1| GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella baltica OS185]
 gi|151367110|gb|ABS10110.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           baltica OS185]
          Length = 882

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 17/184 (9%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--------EKLSIVFFDIDYFKQ 141
           +++      ++   ++ D L+GL N + F+  L            E+ +++F D+D FKQ
Sbjct: 438 IQQRRSMEAKLVHDAKHDALTGLPNRAMFMERLSQAIKHVRRHSLEQFALLFIDLDRFKQ 497

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-----LGSSEQEAAILA 196
           IND  GH  GDK +   + +L         + RLGG+EF         +  +   +  + 
Sbjct: 498 INDTMGHLEGDKFLIETASRLKSCIRDNDTLARLGGDEFVILLDSINNINDARDVSERVI 557

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             + +      +  +SG SI ITIS     +   +   +++  AD A+Y AK +G+   V
Sbjct: 558 QKISQPYRLGTMEFNSGASIGITIS----GKHKVDTSESMLRNADTAMYQAKANGKGCYV 613

Query: 257 CFSD 260
            F D
Sbjct: 614 IFDD 617


>gi|21223867|ref|NP_629646.1| membrane associated phophodiesterase [Streptomyces coelicolor
           A3(2)]
 gi|4467262|emb|CAB37587.1| putative membrane associated phophodiesterase [Streptomyces
           coelicolor A3(2)]
          Length = 1108

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 80/197 (40%), Gaps = 17/197 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN------------EKLSIV 132
            +   + E      ++   +  D L+ L N + F   +                   +++
Sbjct: 592 FNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTRRVQQALSGRRASDRGAALRGTAVL 651

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F D+D FK +ND  GH  GD+++   + +L           RLGG+EFAA  +G   ++ 
Sbjct: 652 FIDLDGFKGVNDTIGHQAGDELLVQAARRLHEAVRKGDTASRLGGDEFAALIVGDGARDR 711

Query: 193 AILANDLRKIIENSQINIS-----SGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
           A     +R++ +  ++ +S      G  + +  S G+A          ++  AD A+Y A
Sbjct: 712 AAREGHIRELADRLRLTLSQPYLIDGNEVRVNASIGVAFAEPGLGAGELLRNADLAMYRA 771

Query: 248 KKSGRNRVVCFSDIENN 264
           K  G+ RV  +      
Sbjct: 772 KAGGKGRVELYRPQMQQ 788


>gi|117925739|ref|YP_866356.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Magnetococcus sp. MC-1]
 gi|117609495|gb|ABK44950.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Magnetococcus sp. MC-1]
          Length = 951

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 103/238 (43%), Gaps = 21/238 (8%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL---GYISGSI-----LKELFI 95
           F A ++   +G   + G  +    N  +    + IS +    G IS  +     +     
Sbjct: 441 FYATMWKHLVGEGHWSGEIWDRRRNGEIFPKWLAISAIRNRQGVISHFVGVFNDISRQKS 500

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148
           +  ++ +L   D L+ L N   F   L          N+ +S++  D+D FK IND  GH
Sbjct: 501 TEQQLERLVFYDPLTQLPNRVLFRDRLIHEVGVAERSNKLMSLLLVDLDRFKIINDTLGH 560

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQ 207
            VGD+++  +S +L+        V RLGG+EFA    G    ++AA +A  +   I   Q
Sbjct: 561 GVGDELLLQVSKRLIASVRKSDTVARLGGDEFAIILPGMERAEDAAHVAETI---INQLQ 617

Query: 208 INIS-SGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +  S     + +  S GIA      +   ++   AD A++ AK+SG+     F+   N
Sbjct: 618 VPFSIEENELFVGASIGIAVHGQDGDDYDSLTMNADAAMFKAKESGKGTYKFFTPDMN 675


>gi|307300303|ref|ZP_07580083.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Sinorhizobium meliloti BL225C]
 gi|307319586|ref|ZP_07599012.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Sinorhizobium meliloti AK83]
 gi|306894708|gb|EFN25468.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Sinorhizobium meliloti AK83]
 gi|306904469|gb|EFN35053.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Sinorhizobium meliloti BL225C]
          Length = 876

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 81/176 (46%), Gaps = 11/176 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDN 145
           EL  + +R+   +  D L+GL N       L           K+SI   D+D FKQIND 
Sbjct: 439 ELEAARHRMEFNALHDPLTGLPNRRFLDQILFDRSRRADAKAKISIFHIDLDRFKQINDT 498

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD+++   +  L        FV R+GG+EF          E A LA+ +   IE 
Sbjct: 499 MGHAAGDEILKHAASLLRDNARQDDFVARIGGDEFVIIRASGGCDEDAALASRV---IEA 555

Query: 206 SQINI-SSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             + +        I +S GIA +    + +S ++  AD ALY AK+ GRNR   F+
Sbjct: 556 MSVPVRYEDQECRIGVSIGIAAQTDAADDLSQVLVNADIALYEAKRRGRNRHETFT 611


>gi|144897382|emb|CAM74246.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 690

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 97/226 (42%), Gaps = 20/226 (8%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGY--------ISGSILKELFISYNRISQLSRIDCL 109
           ++G  +    N  +   S+ ++ + G         +  S +    +   RI   +R D L
Sbjct: 211 WHGELWGRRSNGDVFPASVALTGVQGENGEVGSFVMVASDVTRRKMDEQRIRFHARHDAL 270

Query: 110 SGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           + L N    + +L        +   +L+++F D+++FK +ND+FGH  GD+++  ++ +L
Sbjct: 271 TKLANRHTVMEALGDAIVRAENEGNRLALLFLDVNHFKDVNDSFGHAAGDELLKQVARRL 330

Query: 163 VVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                    +GRLGG+EF  A    +  Q A      +         ++     ++ + S
Sbjct: 331 KGCVRASDIIGRLGGDEFVVALPSITDAQGALACVEKVLYAFSE-PFSLPE-QELYASTS 388

Query: 222 AGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            G+A    H +   T++  AD A+Y AK +G N    +    +   
Sbjct: 389 IGVALYPDHADCAETLLSHADAAMYHAK-AGGNAYRFYDSDMDRQA 433


>gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans]
 gi|133738843|emb|CAL61890.1| conserved hypothetical protein, GGDEF domain [Herminiimonas
           arsenicoxydans]
          Length = 519

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 18/191 (9%)

Query: 85  ISGSILKELFISYNRISQ-------LSRIDCLSGLLNHSAFISSLG-------SYNEKLS 130
           +      EL  + + + +       L+ +D L+GL N   F ++L             L+
Sbjct: 321 VRERAQSELRTARDDLERSNGELAALALLDSLTGLANRRRFDAALDDEFARAMRNQTSLA 380

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSE 189
           ++  D+D+FK+ ND +GHP GD+ +  +S  L      T   V R GGEEF     G+  
Sbjct: 381 LIMLDVDHFKKYNDRYGHPQGDECLKEISKILKTATARTGDLVARYGGEEFVILLPGTDR 440

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYV 246
             AA +A  +R  I+   +  +  P   +T S GIA    +  +     +++ ADQALY 
Sbjct: 441 AGAAAVAERVRLAIQALNMEHAETPDGIVTASLGIAALIPQRQQNSPQQLVHAADQALYK 500

Query: 247 AKKSGRNRVVC 257
           AK+ GRN+   
Sbjct: 501 AKEDGRNQSCI 511


>gi|46908407|ref|YP_014796.1| GGDEF domain-containing protein [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|254931714|ref|ZP_05265073.1| GGDEF domain-containing protein [Listeria monocytogenes HPB2262]
 gi|46881678|gb|AAT04973.1| GGDEF domain protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|293583269|gb|EFF95301.1| GGDEF domain-containing protein [Listeria monocytogenes HPB2262]
 gi|328472195|gb|EGF43066.1| GGDEF domain-containing protein [Listeria monocytogenes 220]
 gi|332312625|gb|EGJ25720.1| GGDEF domain protein [Listeria monocytogenes str. Scott A]
          Length = 357

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 73/255 (28%), Positives = 116/255 (45%), Gaps = 18/255 (7%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           I     K LE ++       + +F    IA    + N+ L  +   P + +   +  +++
Sbjct: 115 ITALFSKRLEKYN------IWGVFILNIIACGFVVVNLHLI-LAKEPDFWINMFIFVSIA 167

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----N 126
           LVI +++  L+   I     K+LF  Y    Q S +D L+ L N   F   +       +
Sbjct: 168 LVIGAVSAGLMKNMIKS---KQLFQKY---EQDSTLDYLTRLSNVRQFDEKINHVMDDGS 221

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
            +++++  DIDYFK IND +GH  GD ++  L+  L           R GGEEF+   L 
Sbjct: 222 RQVTLMLIDIDYFKNINDTYGHDAGDAILKQLAIILKRNTSDGSEAFRNGGEEFSIVLLD 281

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALY 245
              ++    A  +RK  E+    I SG  + ITIS G++        S  +   AD+ALY
Sbjct: 282 CPIEKGNFFAEQVRKETEDHDFMIPSGKLVKITISVGVSSSKDGANTSEGLFKSADEALY 341

Query: 246 VAKKSGRNRVVCFSD 260
            AK +GRNRV    +
Sbjct: 342 KAKLTGRNRVCIADE 356


>gi|332535961|ref|ZP_08411658.1| diguanylate cyclase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034661|gb|EGI71217.1| diguanylate cyclase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 795

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 12/173 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQINDNFG 147
                 +  L+  D L+   N       +          E+  I+  DID+FK +ND +G
Sbjct: 616 KKRNEELDYLAARDPLTNCYNRRILFEVMNRDFLDLPQIEEYCILMVDIDHFKSVNDTYG 675

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD V+  +++ L         V R GGEEF      +++++A  +A  +R  +E + 
Sbjct: 676 HSIGDTVLCGVAELLQANIRKSDSVARFGGEEFCIILPNTTQEQAIRIAEAIRIKVEKAT 735

Query: 208 INISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            +      I +T S G+     K    S +I +AD ALY AK  GRN+V  + 
Sbjct: 736 FD-----DIPVTCSFGVTSIKFKARTPSELIEQADLALYEAKSLGRNQVALWD 783


>gi|330976496|gb|EGH76547.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 332

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
              + E     + + +L+  D L+   N   F                 L+ +  DID F
Sbjct: 154 AEDITEKKHLEDELQRLATTDVLTQSSNRRHFFECAQREFELARLNGTPLAFLLLDIDDF 213

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND +GH  GD V+  +++            GR+GGEEFAA   G +   A  +A  L
Sbjct: 214 KLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCAPDMAMQIAERL 273

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           ++ I+      S G +  IT S G+      +P + T+  RAD A+Y AK+ G+N++V 
Sbjct: 274 QREIQRQNFQ-SGGTTFSITASQGLTNLGADDPSLETLHGRADAAMYQAKRQGKNQIVL 331


>gi|327538970|gb|EGF25608.1| diguanylate cyclase [Rhodopirellula baltica WH47]
          Length = 331

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 16/189 (8%)

Query: 79  SLLLGYISG-SILKELFIS-YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------L 129
           S L  ++S  SI  +   + YN +++    D L+G LN    + ++     +       L
Sbjct: 147 SFLFRFLSADSIETQYHETVYNALTR----DALTGALNKRFLMEAIDRELSRSTRAKLEL 202

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID+FK +ND  GH VGD V+     ++  +  T   + R GGEEF      +  
Sbjct: 203 AVIMLDIDHFKSVNDTHGHLVGDDVLRTFGKRIQALCRTDDLLARYGGEEFCLLLAATGH 262

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVA 247
            +A  +A   R  I  +    S GP + IT S G++     +P  +  ++  ADQ LY A
Sbjct: 263 HDAMEIAERCRATIAGTPFQTSIGP-LEITASFGVSVMDPDQPSTVKALLQDADQHLYDA 321

Query: 248 KKSGRNRVV 256
           K +GRN+V 
Sbjct: 322 KNAGRNQVR 330


>gi|239908783|ref|YP_002955525.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239798650|dbj|BAH77639.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 825

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 79/170 (46%), Gaps = 8/170 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDK 153
            + S  D L+GL N     S +  Y E       ++  +  D+DYFKQ+ND +GH  GD 
Sbjct: 650 REQSLRDPLTGLHNRRFLDSYVHHYEEISRRTEKRVGFLMVDVDYFKQVNDKYGHLAGDA 709

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  LS  +           R GGEEF            A++A  +R+ +E     + +G
Sbjct: 710 VLKELSGLVRQTVRAADLAVRFGGEEFLILLHEVRPNFTAVVAEKIRQTVEAHAFPLPNG 769

Query: 214 PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            +IH T+S G AE           I  AD ALY AK+ GRN+V+CF    
Sbjct: 770 TTIHKTVSVGFAEYPTDAASFYKAIKFADVALYKAKEGGRNKVLCFEQSM 819


>gi|167035266|ref|YP_001670497.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1]
 gi|166861754|gb|ABZ00162.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1]
          Length = 754

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 51/180 (28%), Positives = 93/180 (51%), Gaps = 10/180 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNE---KLSIVFFDIDYFKQ 141
           +L +L  +   + Q +  D L+ L+N   F       L  +     +L+++F DID+FK+
Sbjct: 275 LLSQLDQARASLQQAAHYDALTNLVNRRGFNQVFAERLVEHQANENRLAVMFLDIDHFKR 334

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD+++  +++ +     +   V RLGG+EF      +S  EA  LA  + +
Sbjct: 335 INDSLGHDAGDELLKVIANHIKAATRSQDLVARLGGDEFCVVTSLNSRDEARHLAQRIMQ 394

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +++  I++  G  + +T S G++           ++  AD ALY +K +GRN +  F+D
Sbjct: 395 RMKD-PIDL-GGRRMVMTTSIGVSIFPDDGSTAEELLKHADLALYQSKDNGRNSLNFFND 452


>gi|86749585|ref|YP_486081.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
 gi|86572613|gb|ABD07170.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
          Length = 427

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 14/227 (6%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101
           +  I  + L Y     F  +    +  L +      ++LLL + +  +L  LF+S     
Sbjct: 167 IALICILVLPYTVAMVFSPIAQTYLIALLIPGWGAGMALLL-FENYDVLLHLFLSERENK 225

Query: 102 QLSRIDCLSGLLNH----SAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            L+  D L+GL N       F   L       G  ++ L+++  D+D FK  ND +GH V
Sbjct: 226 WLANYDQLTGLPNRTMQHRRFDELLRDARGAPGRDDQPLTVLCLDLDGFKAANDGYGHAV 285

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  ++++L         + R+GG+EF       S  E+A +A  +   I     ++
Sbjct: 286 GDAVLVVVAERLRSCVRDHDLIFRVGGDEFVILLPAVSAMESAPIAERVIARIAQ-PFDL 344

Query: 211 SSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
                + I +S G A   +  P    ++  AD A+Y AK+ GR  VV
Sbjct: 345 GQDTPLSIGVSIGSATFPNDGPTADDLLRSADHAMYEAKRRGRGVVV 391


>gi|114047701|ref|YP_738251.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-7]
 gi|113889143|gb|ABI43194.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-7]
          Length = 752

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 9/184 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQ 141
           S + E   +   I   +  D L+GL N +A    +             S +  D+D FKQ
Sbjct: 299 SDISERKKAAQLIKYQANNDSLTGLANRNALFRQIQELISADSLTPGFSFMLMDLDNFKQ 358

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND +GH  GD ++  + +Q+           RLGG+EFA    G  +++E + LA  + 
Sbjct: 359 VNDTYGHDKGDALLVQVVEQIKTCLNDQAVFSRLGGDEFALLLPGIVTQRELSQLAEKIN 418

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +   +  +S    ++ ++S GIA        +  ++  ADQA+Y++K +GRNR   F+
Sbjct: 419 QQVYR-RYELSLDKGVYSSVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFT 477

Query: 260 DIEN 263
           +   
Sbjct: 478 EQMQ 481


>gi|325275267|ref|ZP_08141224.1| diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51]
 gi|324099608|gb|EGB97497.1| diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51]
          Length = 754

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 51/180 (28%), Positives = 91/180 (50%), Gaps = 10/180 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSY---NEKLSIVFFDIDYFKQ 141
           +L EL  +   + Q +  D L+ L+N   F       L  +     +L+++F DID+FK+
Sbjct: 275 LLSELDQARASLQQAAHYDALTNLVNRRGFNQLFAERLAEHLASESRLAVMFLDIDHFKR 334

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD+++  +++ +     +   V R GG+EF      +S  EA  LA  + +
Sbjct: 335 INDSLGHHAGDELLKVIANHIKAATRSQDLVARFGGDEFCVVTSLNSRDEARHLAQRIMQ 394

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +++  I +  G  + +T S G++           ++  AD ALY +K +GRN +  F+D
Sbjct: 395 RMKD-PIELC-GRRMVMTTSIGVSIFPDDGSSAEELLKHADLALYQSKDNGRNSLNFFND 452


>gi|269103460|ref|ZP_06156157.1| hypothetical sensory box/GGDEF family protein [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163358|gb|EEZ41854.1| hypothetical sensory box/GGDEF family protein [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 603

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 56/194 (28%), Positives = 87/194 (44%), Gaps = 20/194 (10%)

Query: 84  YISGSILKELFISYNRI-------SQLSRIDCLSGLLNHSAFISSLGS-------YNEKL 129
            I    + E   +  ++         LS ID L+ + N  +F  SL           + L
Sbjct: 410 LIIARDVTERKKAEQQLADAIMELQALSFIDGLTRIANRRSFDDSLHRMWHSHIRLQQPL 469

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSS 188
           +++F DIDYFK  ND++GH +GD V+  ++  L  V       V R GGEEFA     + 
Sbjct: 470 TLIFCDIDYFKAFNDSYGHQIGDTVLREVAAVLSSVIQRETDEVARYGGEEFAILLPTTD 529

Query: 189 EQEAAILANDLRKIIE--NSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQAL 244
            +    +A  L+K +     ++     P+  +T+S GI        E     + +AD+AL
Sbjct: 530 SKGGEYVAKKLQKALALRAQEVPFCDIPT-TLTLSIGITTVIPQPNEGFQHFLEQADKAL 588

Query: 245 YVAKKSGRNRVVCF 258
           Y AK +GRN    F
Sbjct: 589 YQAKAAGRNCYRHF 602


>gi|254558955|ref|YP_003066050.1| sensory box-containing diguanylate cyclase/phosphodiesterase,
           PAS/PAC, GGDEF and EAL domains [Methylobacterium
           extorquens DM4]
 gi|254266233|emb|CAX21991.1| putative sensory box-containing diguanylate
           cyclase/phosphodiesterase, PAS/PAC, GGDEF and EAL
           domains [Methylobacterium extorquens DM4]
          Length = 737

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 11/179 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGH 148
             +  RI+ L+  D L+GL N +    SL           L+++  D+D FK +ND +GH
Sbjct: 299 KAAELRIAHLAHHDALTGLPNRTFLSESLHQSLRDPDRVCLAVLSLDLDGFKAVNDRYGH 358

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQ 207
           P GD ++  ++++L         V R GG+EF    +  +S  E   LA+ L   IE+  
Sbjct: 359 PGGDALLVCVAERLQTKVSGGDIVARFGGDEFVVLNVAFTSPSEVEDLAHRL---IESLS 415

Query: 208 INIS-SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             I     S+ I +S GIA           ++  AD ALY AK +GR     F    + 
Sbjct: 416 TPIPLDNESVTIGVSIGIAFAPTDGRTAEELLKNADAALYRAKTAGRGTFRFFEPEMDR 474


>gi|328885234|emb|CCA58473.1| Sensory box or GGDEF family protein [Streptomyces venezuelae ATCC
           10712]
          Length = 946

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 15/193 (7%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKL-----SIVFFDID 137
            +   + E      ++   +  D L+ L N + F   +       +      +++F D+D
Sbjct: 467 FNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTRRVRQALSGRRASDPGTAVLFIDLD 526

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-------EQ 190
            FK +ND  GH  GD ++   + +L           RLGG+EFAA  LG           
Sbjct: 527 GFKGVNDRHGHQAGDDLLVQAARRLQDSVRAGDTAARLGGDEFAALILGDGGRDQAARRN 586

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +   +A+ LR  +      +  G  + +  S G+A          ++  AD A+Y AK +
Sbjct: 587 QVQEIADRLRLTLSR-PYRVDGGTEVRVAASIGVAFAEPGIGAGDLLRNADLAMYRAKAA 645

Query: 251 GRNRVVCFSDIEN 263
           G++RV  ++    
Sbjct: 646 GKDRVELYAPQMQ 658


>gi|302337375|ref|YP_003802581.1| diguanylate cyclase with PAS/PAC sensor [Spirochaeta smaragdinae
           DSM 11293]
 gi|301634560|gb|ADK79987.1| diguanylate cyclase with PAS/PAC sensor [Spirochaeta smaragdinae
           DSM 11293]
          Length = 528

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 64/196 (32%), Positives = 98/196 (50%), Gaps = 12/196 (6%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------ 122
           + + + +I+ SLLL +   + +     + +R+ +LS  D L+G+ N   F+S L      
Sbjct: 334 VQVSLNTISDSLLLSF---TDITLRKKTESRLFELSLKDELTGIYNRRHFVSVLSQELQH 390

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              Y   +S++ FDID FK IND +GHP GD ++  LS ++           R GGEEFA
Sbjct: 391 YQRYGTPISLLLFDIDLFKIINDTWGHPAGDFILRELSSRIAGQIRDIDIFFRTGGEEFA 450

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRA 240
               G + ++  I A  LR I+ ++   +     I +TIS G+AE         +   +A
Sbjct: 451 VVMPGITLEQGEIAAERLRVIVADTPF-LWESEEITVTISIGLAEAEQPNSDPKSFFRKA 509

Query: 241 DQALYVAKKSGRNRVV 256
           D  LY AKK GRN V 
Sbjct: 510 DDRLYWAKKEGRNCVC 525


>gi|157373981|ref|YP_001472581.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sediminis HAW-EB3]
 gi|157316355|gb|ABV35453.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sediminis HAW-EB3]
          Length = 817

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/235 (24%), Positives = 109/235 (46%), Gaps = 18/235 (7%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG------YISG--SILKELF 94
            F  +++   +    ++G  +   +N ++    +T+S +LG      Y     + +    
Sbjct: 324 AFYDDLWTGLLHKGRWHGEIWNRRKNGAIFPQLVTLSSMLGDDGLVRYFVAVFTDISAQK 383

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147
            +  +++ L+  D L+ L N     + +            +L+IVF D+D FKQIND+FG
Sbjct: 384 KNEEQLAHLAYHDPLTNLPNRMTLTAQIEQELRHAQYQGSQLAIVFIDVDLFKQINDSFG 443

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENS 206
           H +GD+++  L+++L    G    + R+GG+EF     G    E   LA + LR+  E  
Sbjct: 444 HLMGDEILVELANRLTAQKGAEDTLARIGGDEFVVLFPGGGGSEELTLALSKLREAFEQ- 502

Query: 207 QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
             ++     + +T S G++   H      T++  AD A + AK+  RN    +++
Sbjct: 503 PFSVGENDQVRLTASMGVSVYPHDGKDGYTLLRNADAAKHRAKQDSRNSYAFYTE 557


>gi|146309094|ref|YP_001189559.1| diguanylate cyclase [Pseudomonas mendocina ymp]
 gi|145577295|gb|ABP86827.1| diguanylate cyclase [Pseudomonas mendocina ymp]
          Length = 439

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 68/282 (24%), Positives = 114/282 (40%), Gaps = 35/282 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIF-----LFYIGL 55
           + R     ++ WL  + +  +       +    +    +A V  +A        L    L
Sbjct: 151 LARRYPQGIAEWLA-QIHWPALHGAWMNLAQLAYLMFLLAFVALLAQYLRRPRPLHAAQL 209

Query: 56  TPFYGLEYILVENLSLV-IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
               GL ++L +   L   + + IS+++  +  S+  E +       Q++  D L+GL  
Sbjct: 210 LGLCGLLWMLPQVFILANALQVMISMVMLMLVASVAHEAY-------QMAFRDELTGLPG 262

Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
             A    L        I   D+D+FK+ ND  GH VGD+V+  ++ QL  V G      R
Sbjct: 263 RRALNERLQRLGRDYVIAMVDVDHFKKFNDTHGHDVGDQVLRLVASQLRKV-GGGGKAYR 321

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-------------------S 215
            GGEEF     G S ++       +R  IE  ++ +                        
Sbjct: 322 YGGEEFTLLFPGRSLEQCLPHMETVRLAIEQYRMQLRDKQNRPRDDREGKPRRAGKGASE 381

Query: 216 IHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +T+S G+AER   +     +I  AD+ALY AK +GRN + 
Sbjct: 382 VSVTVSMGVAERKAEQRNPQEVIKEADKALYSAKAAGRNCIR 423


>gi|73543082|ref|YP_297602.1| GGDEF [Ralstonia eutropha JMP134]
 gi|72120495|gb|AAZ62758.1| GGDEF [Ralstonia eutropha JMP134]
          Length = 584

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 106/231 (45%), Gaps = 25/231 (10%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLLLG-YISGSILKELFISY----NRISQLSR 105
             + L P   L   +  ++S  ++ I + L L  +I+  ++ +LF  Y     ++ +++R
Sbjct: 339 LLMDLVPARKLYASMFASMSRPLLMIWVLLPLLLWITLKVVTQLFDHYIALGEKLQEIAR 398

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+GL N                   + L++V  DID+FK++ND++GH  GDKV+  L
Sbjct: 399 QDPLTGLANRRRMRELAQSEFERQKRDGQPLALVMIDIDFFKKVNDHWGHASGDKVLVEL 458

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS------- 211
           +  +           RLGGEEFA     +S  EAA  A  LR+ I    +          
Sbjct: 459 ARTMRANLRNVDQPARLGGEEFAVLMPNTSLAEAAQSAERLRRAIAACVVEADLEACVER 518

Query: 212 SGPSIHITISAGIAERCHKE------PISTIIYRADQALYVAKKSGRNRVV 256
           +   I  TIS G+AE   +        +  +   AD+ LY AK  GRNRVV
Sbjct: 519 ADRIIRFTISVGVAEARGEAADGVPMTLDGLAAIADRRLYDAKTQGRNRVV 569


>gi|89092074|ref|ZP_01165029.1| GGDEF protein [Oceanospirillum sp. MED92]
 gi|89083809|gb|EAR63026.1| GGDEF protein [Oceanospirillum sp. MED92]
          Length = 304

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 10/197 (5%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----- 128
           I +   +L       + K+L  +  R+ +LS  D L+ + N      +L    ++     
Sbjct: 108 IVLKAKILAMERIAKMKKDLDSANARLEKLSSQDPLTKISNRRDLEHNLLKEWQRSKRDQ 167

Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAAL 185
             L+ +  DIDYFK  NDN+GH  GD  +  ++  L      +   V R GGEEFA    
Sbjct: 168 TELAAIMLDIDYFKPYNDNYGHQQGDDCLKVVAKTLKKCLNRSHDLVARYGGEEFAIILP 227

Query: 186 GSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAE-RCHKEPISTIIYRADQA 243
            ++   A  +A  +   ++ + +    S  +  +T+S GI+  R   E  + +I +AD+A
Sbjct: 228 DANLSGAETVALQILDALKEANLKHEFSTVADRVTVSMGISSTRFAAETPNALIKQADEA 287

Query: 244 LYVAKKSGRNRVVCFSD 260
           LY AK++GRNR   + +
Sbjct: 288 LYQAKENGRNRFELYQE 304


>gi|120599030|ref|YP_963604.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sp. W3-18-1]
 gi|120559123|gb|ABM25050.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. W3-18-1]
          Length = 749

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 9/187 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQ 141
           S + E   +   I   +  D L+GL N +A    + +           S +  D+D FKQ
Sbjct: 299 SDISERKKAAQLIKYQANNDSLTGLANRNALFRQIQTLITSDCLTPGFSFMLMDLDNFKQ 358

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLR 200
           +ND +GH  GD ++  +  Q+     + +   RLGG+EFA    G   Q+A   LA  + 
Sbjct: 359 VNDTYGHDKGDMLLLQVVGQIKTCLDSSIMFARLGGDEFALLLPGVVTQKALSQLAEKII 418

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           K +   +  +S    ++ ++S GIA        +  ++  ADQA+Y++K +GRNR   F+
Sbjct: 419 KNVYR-RYELSKDKGVYSSVSIGIARFPEDALNLEQLLNCADQAMYISKANGRNRYHFFT 477

Query: 260 DIENNTC 266
           +      
Sbjct: 478 EQMQQNA 484


>gi|241766338|ref|ZP_04764225.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii
           2AN]
 gi|241363525|gb|EER58974.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii
           2AN]
          Length = 456

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 52/190 (27%), Positives = 93/190 (48%), Gaps = 16/190 (8%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129
           +I  L+  +S  I     I+  +   L+  D L+GL N +AF       ++ +      +
Sbjct: 267 SIMALVQDVSAKI----QIARQQ-QYLANHDSLTGLYNRAAFQGQLELSLARVREQGGAV 321

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-S 188
           +++F D+D FK +ND  GH  GD+V+  ++ +L         V RLGG+EF        S
Sbjct: 322 ALLFIDLDGFKLVNDQEGHRAGDEVLRIVAQRLGRAVREGDTVARLGGDEFLVMLDNDVS 381

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVA 247
            ++  ++   + + +   Q  +  G ++HI  S G+A     E  I  ++ RADQA+Y A
Sbjct: 382 PEDPHLIGRRIIEAL--HQPMVVDGRNLHIGASIGVAMHPPLEGDIDVLMSRADQAMYAA 439

Query: 248 KKSGRNRVVC 257
           K++G+  +  
Sbjct: 440 KRNGKGCLCY 449


>gi|120613358|ref|YP_973036.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
 gi|120591822|gb|ABM35262.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
          Length = 572

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 88/197 (44%), Gaps = 8/197 (4%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSL 122
           + ++ VI ++            + +E      ++ + S  D L+GL N  AF       +
Sbjct: 372 DEIAAVIGAVRALQEHTQARQVLERERDGLIAQLREQSLTDFLTGLPNRRAFFAAARERI 431

Query: 123 GSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
               ++   ++++  D+D FK  ND  GH  GD+ +  ++  +         V R GGEE
Sbjct: 432 AQARQQRFDVALMLLDVDLFKSFNDRAGHAAGDEALRAVARAVRHTLRPGDLVARYGGEE 491

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIY 238
           F       + +E A  A  LR  IE + + + SG    +T S G+A    H   +  ++ 
Sbjct: 492 FVVLLGPCAGREGAACAERLRHAIETAPVVLPSGERFRLTASVGVAVSQRHGMVLDHLLS 551

Query: 239 RADQALYVAKKSGRNRV 255
            AD ALY AK  GRNRV
Sbjct: 552 EADTALYRAKDRGRNRV 568


>gi|77918277|ref|YP_356092.1| putative sensory box/response regulator [Pelobacter carbinolicus
           DSM 2380]
 gi|77544360|gb|ABA87922.1| diguanylate cyclase/phosphodiesterase [Pelobacter carbinolicus DSM
           2380]
          Length = 717

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 12/185 (6%)

Query: 91  KELFISYNR-ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           ++   + +R I QL+  D L+ L N       L          +  L+++F D+D FKQ+
Sbjct: 243 RQRHTAQDRHIQQLAYYDPLTELPNRVLLQERLDQSLAEALRSHHPLAVLFVDLDRFKQV 302

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRK 201
           ND+ GH +GD+++  +  +L     +   V RLGG+EF     G         + + +  
Sbjct: 303 NDSLGHAIGDQLLKMVGQRLQQCLRSNDTVARLGGDEFIIVLSGFRHPSSLPKILDKIFD 362

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTII-YRADQALYVAKKSGRNRVVCFSD 260
            +  S+        I +T S G+A        + ++   AD A+YVAK+   N    F  
Sbjct: 363 AL--SKPYRIEMHRIVVTASIGVAVCPDDGTAADLLMRNADIAMYVAKEERGNSYQLFCQ 420

Query: 261 IENNT 265
             N  
Sbjct: 421 EMNQA 425


>gi|238785724|ref|ZP_04629698.1| Diguanylate cyclase [Yersinia bercovieri ATCC 43970]
 gi|238713364|gb|EEQ05402.1| Diguanylate cyclase [Yersinia bercovieri ATCC 43970]
          Length = 319

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 105/228 (46%), Gaps = 10/228 (4%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR 99
              + IA   L        +  E   ++  + + + +    LLG ++    K L  +   
Sbjct: 94  GLALQIACSLLTAWIFNLPFKPETSPLQVYACLPMIVVYPSLLGLVTYRTAKRLAENREE 153

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + ++S  D L+GL N   +   L         Y    +++  DID FK IND FGH VGD
Sbjct: 154 LLRISVRDGLTGLYNRRHWEHQLHNQFDSCRRYQHGATLILLDIDNFKSINDTFGHAVGD 213

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             I  L+++L++       VGR GG+EF A    ++ ++   +   +++ + N       
Sbjct: 214 DAITVLAEELLLGLRAIDIVGRYGGDEFGAILPNTTAEQTREVLTRIQEKLANLVFE--Q 271

Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            PS+ + +SAGIA+  H        +  AD ALY+AK +GRNR+   S
Sbjct: 272 APSLQLRVSAGIADYRHDMINYQQWLKAADSALYLAKDNGRNRIELAS 319


>gi|146292899|ref|YP_001183323.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella putrefaciens CN-32]
 gi|145564589|gb|ABP75524.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella putrefaciens CN-32]
          Length = 749

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 9/187 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQ 141
           S + E   +   I   +  D L+GL N +A    + +           S +  D+D FKQ
Sbjct: 299 SDISERKKAAQLIKYQANNDSLTGLANRNALFRQIQTLITSDCLTPGFSFMLMDLDNFKQ 358

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLR 200
           +ND +GH  GD ++  +  Q+     + +   RLGG+EFA    G   Q+A   LA  + 
Sbjct: 359 VNDTYGHDKGDMLLLQVVGQIKTCLDSSIMFARLGGDEFALLLPGVVTQKALSQLAEKII 418

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           K +   +  +S    ++ ++S GIA        +  ++  ADQA+Y++K +GRNR   F+
Sbjct: 419 KNVYR-RYELSKDKGVYSSVSIGIARFPEDALNLEQLLNCADQAMYISKANGRNRYHFFT 477

Query: 260 DIENNTC 266
           +      
Sbjct: 478 EQMQQNA 484


>gi|297539643|ref|YP_003675412.1| diguanylate cyclase [Methylotenera sp. 301]
 gi|297258990|gb|ADI30835.1| diguanylate cyclase [Methylotenera sp. 301]
          Length = 327

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 97/186 (52%), Gaps = 8/186 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDID 137
           ++  + ++L  +  +   L+RID L+   N  AF  ++    E          +V  DID
Sbjct: 136 VNKELEQKLRDAKQKAETLARIDPLTNAYNRRAFFENVPRALEGALRKVTPFCLVMVDID 195

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FKQ+ND +GH  GD+ +  L + + +       + R GG+EF    L  ++++AA L +
Sbjct: 196 HFKQLNDVYGHNRGDEALTSLIEIMKINARASDLLYRFGGDEFVMVLLDCTDEQAAELIH 255

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +R  +  S I  S   +I +T S G+++      I ++++ AD+ALY  K  GR+RV  
Sbjct: 256 RIRVGLTASPIR-SGSTNILLTCSFGVSQARPDSTIESLMHEADEALYAGKSEGRDRVKL 314

Query: 258 FSDIEN 263
           + +++N
Sbjct: 315 YRNLKN 320


>gi|241766258|ref|ZP_04764154.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii
           2AN]
 gi|241363647|gb|EER59045.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii
           2AN]
          Length = 758

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
             + E      R+  L++ D L+ L N             +       +++++ D+D FK
Sbjct: 560 RDVTESVAMAARMEHLAQYDPLTDLPNRVLLQDRARQALAQALRDERMVAVMYIDLDGFK 619

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
           Q+ND  GH VGD+++  L+ +L  V      V R GG+EF     G    ++A  +A  +
Sbjct: 620 QVNDTLGHDVGDELLVQLAGRLKAVMRVSDTVCRQGGDEFVVMLPGIDSAEQACSVARKI 679

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
               E     +    ++ + +S GI+    H E    +   AD A+Y AK +GR +   +
Sbjct: 680 MAACEA--PYVLQSQTLPVGLSGGISLFPVHGENFEELSRNADAAMYAAKHAGRRQFRLY 737

Query: 259 S 259
           +
Sbjct: 738 A 738


>gi|149174472|ref|ZP_01853098.1| GAF domain/GGDEF domain protein [Planctomyces maris DSM 8797]
 gi|148846582|gb|EDL60919.1| GAF domain/GGDEF domain protein [Planctomyces maris DSM 8797]
          Length = 503

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 9/168 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           + RI +++  D L+GL NH+ F   L        + + +LSI+  DID+FK  ND +GH 
Sbjct: 325 FKRIEEMASRDGLTGLFNHATFQEKLHELVTQADAQSSQLSIIMSDIDHFKSFNDTYGHQ 384

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++     V      + R GGEEF    L     +A  +A DLR+ + N  I 
Sbjct: 385 AGDFVLKEVARIWKTVMPEKAIIARYGGEEFIGVLLDHEYSQAMQIAEDLRETLVNCPI- 443

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  G  + +T S G+ E        + ++  AD+ LY AK+SGRN+VV
Sbjct: 444 LFEGQQLQVTASFGVTEFKYPATTTNELVRIADENLYKAKESGRNQVV 491


>gi|254249082|ref|ZP_04942402.1| hypothetical protein BCPG_03942 [Burkholderia cenocepacia PC184]
 gi|124875583|gb|EAY65573.1| hypothetical protein BCPG_03942 [Burkholderia cenocepacia PC184]
          Length = 744

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 19/192 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDID 137
           SG  + E   +  R+++L+  D L+GL N  A    + +            + I+F D+D
Sbjct: 297 SGIDITEERNAQQRLTELANTDVLTGLPNRHAISERIHAAIAEEDANTRGHVGILFLDLD 356

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAA 193
            FK++ND++GH  GD+++  +S  +     +   + RLGG+EF      ++    E  A 
Sbjct: 357 NFKRVNDHYGHITGDRLLQDVSAIISGCLPSGATLARLGGDEFLVLFEHATRPLLEATAQ 416

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
           I+   LR  I    +       ++ + S GIA    H + + T+I  AD A+YVAK+ G+
Sbjct: 417 IILERLRTPIHLGLM------EVYTSCSIGIAMHPQHGDSLETLIRSADTAMYVAKEEGK 470

Query: 253 NRVVCFSDIENN 264
           +    FS   N 
Sbjct: 471 HTYRVFSLEMNQ 482


>gi|109898000|ref|YP_661255.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
            T6c]
 gi|109700281|gb|ABG40201.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
            T6c]
          Length = 1524

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 51/212 (24%), Positives = 98/212 (46%), Gaps = 11/212 (5%)

Query: 61   LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
            +  +LV   ++  I+    +    I  S + E   +   + +L+  D L+GL N +  + 
Sbjct: 1055 VRDVLVYIKAVACINDVTDIDSYLIILSDISEHKKAQQALIKLANFDALTGLPNRALLLD 1114

Query: 121  S-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                           L + F D+D FKQ+ND+ GH  GD ++  +S +L+ +      + 
Sbjct: 1115 RVDHAIYQAQRSASTLGLFFIDLDKFKQVNDSLGHNAGDTLLQEISARLLNLLRKEDTIA 1174

Query: 174  RLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-E 231
            RLGG+EF        +  +   LA+ + +II ++ + + +   + ++ S GIA      +
Sbjct: 1175 RLGGDEFVVLIENVHTIDDLTHLASQIIEII-DTPVQLEN-HLVSVSSSIGIALYPDDAQ 1232

Query: 232  PISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                ++  AD A+Y AK++GR+    F+   N
Sbjct: 1233 DAQELLQNADIAMYHAKENGRSHFQFFTAKMN 1264


>gi|95930140|ref|ZP_01312879.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
 gi|95133834|gb|EAT15494.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
          Length = 568

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 81/177 (45%), Gaps = 13/177 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + EL  +  ++ QL+  D L+GL N + F   L         +    ++++ D+D FK 
Sbjct: 380 DVTELKQAEAKLKQLAHHDPLTGLANRNLFFDRLQHALHDAKRHGRIFALLYLDLDKFKP 439

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND-L 199
           IND  GH  GD  +  +S +L         V R+GG+EF     G      A  LA   +
Sbjct: 440 INDTLGHEFGDLALQEISKRLQETLRGDDTVARIGGDEFIIILNGLPDINAAVPLAEKVI 499

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
           R I+   QI      S  + +S GI+      +   T+I  AD+A+YVAK SG N  
Sbjct: 500 RTILTPIQI---GSLSHQLGVSVGISVFPGDGKDTDTLISTADKAMYVAKHSGGNGY 553


>gi|330965690|gb|EGH65950.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 332

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
              + E     + + +L+  D L+   N   F                 L+ +  DID F
Sbjct: 154 AEDITEKKHLEDELQRLATTDVLTQSSNRRHFFECAQREFELARLNGTPLAFLLLDIDDF 213

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND +GH  GD V+  +++            GR+GGEEFAA   G + + A  +A  L
Sbjct: 214 KLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCAPEMAMQIAERL 273

Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++ I+      ++G +  IT S G+       + +  +  RAD A+Y AK+ G+N++V 
Sbjct: 274 QREIQRQNFQ-ANGSTFSITASQGLTNLGPEDQGLEALYGRADAAMYQAKRQGKNQIVL 331


>gi|330503721|ref|YP_004380590.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328918007|gb|AEB58838.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Pseudomonas mendocina NK-01]
          Length = 408

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 11/172 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +++  L++ D L+ L N       +         +   L+++F D+D FKQIND+ GH V
Sbjct: 229 DKMMHLAQHDVLTHLPNRLLLDDRIAQAIHLAKRHASSLALMFLDLDNFKQINDSLGHTV 288

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQIN 209
           GD+++  ++ +L+    +   V R GG+EF         E++AA+ A  +   +     +
Sbjct: 289 GDQLLQSVARRLLTCVRSSDTVSRTGGDEFIVLLSEIQGERDAAVSARKILDALAAQ--H 346

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                 + IT S GI+           ++  AD A+Y AK++GRNR   F D
Sbjct: 347 CIEQLGVQITCSIGISLFPADGSNAGALLRHADNAMYQAKQAGRNRYRFFHD 398


>gi|308188099|ref|YP_003932230.1| hypothetical protein Pvag_2621 [Pantoea vagans C9-1]
 gi|308058609|gb|ADO10781.1| Uncharacterized signaling protein [Pantoea vagans C9-1]
          Length = 715

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 60/274 (21%), Positives = 116/274 (42%), Gaps = 22/274 (8%)

Query: 10  SIWLCHEKNLESFSPHTFM-IYFSIFFSIFIATVIFIANIFLFYI--------GLTPFYG 60
           ++WL            T + I  S+     IA + +   +   +         G+   + 
Sbjct: 157 ALWLAFNLREGQTGRVTLLRIGASVVMGCAIAGMHYTGMMAAEFPAHSHPVGQGVNSNWL 216

Query: 61  LEYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSA 117
              + V  +S++ I++ +S+L   +      +   L  +   ++QL+  D L+ L N   
Sbjct: 217 AILVTVVTISILGITLLVSMLDARMQARTSILASSLAEANRELAQLALHDNLTRLPNRIL 276

Query: 118 FISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
               L            + +++F D+D FK +ND FGH +GD ++  +++++        
Sbjct: 277 LEDRLEQAINKANREQTQFALMFMDLDGFKAVNDAFGHHIGDSLLVGVTERMSQQMTGYY 336

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            + RLGG+EF          +AA +A+ L K ++    +IS    + +++S GIA     
Sbjct: 337 TLARLGGDEFVLLIEIDDPNDAAAIADKLVKAVDR-PFDISR-YELVVSLSLGIAVYPGD 394

Query: 231 E-PISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                 +++ AD A+Y  K +GRN    F    N
Sbjct: 395 GVDERELMFNADAAMYHTKNNGRNGYTFFQPSMN 428


>gi|296272342|ref|YP_003654973.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
 gi|296096516|gb|ADG92466.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
          Length = 366

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 85/174 (48%), Gaps = 8/174 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQI 142
           +KEL     R+  L+  D L+ + N  +F         +L   ++ +SI+  DID FK  
Sbjct: 190 IKELEKVNLRLFDLAHTDYLTQIKNRRSFFLHANSLFQNLKKAHKPMSIIMIDIDNFKNF 249

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH +GDKV+   +  +          GRLGGEEF  A           +A D+RKI
Sbjct: 250 NDTYGHEMGDKVLKLFAKTISNYLSDDAIFGRLGGEEFIIALPYKKIDSTIPIAEDIRKI 309

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           IEN  I +     + IT S G+++  +   I  II  AD  LY AK  G+NRV 
Sbjct: 310 IENLVIRVPYS-ELFITASFGVSDSTNAYTIDEIIKSADDMLYDAKSKGKNRVR 362


>gi|290509423|ref|ZP_06548794.1| sensory box-containing diguanylate cyclase [Klebsiella sp. 1_1_55]
 gi|289778817|gb|EFD86814.1| sensory box-containing diguanylate cyclase [Klebsiella sp. 1_1_55]
          Length = 418

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 61/193 (31%), Positives = 91/193 (47%), Gaps = 12/193 (6%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
           V+  +  ++   I L+L  I    + E       +   +  D L+GLLN   F   + + 
Sbjct: 217 VQTYAGPVVLYNIRLMLCIIH--DITEEVHLKKELEFSAAHDPLTGLLNRREFYRLVEAP 274

Query: 126 N---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
           +   +   ++  DID+FK IND  GH  GD+V+  +S  L         + R GGEEF  
Sbjct: 275 SFIAQGFCLLLIDIDHFKSINDIHGHQKGDEVLLVISRILETSVDREDKIYRWGGEEFLL 334

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
               S    A ILA  +R+ +   Q       ++ +T+S G+AE    E I  +  R D+
Sbjct: 335 FLPHSPIARALILAEGIRQAVSEYQ-------TLSVTVSIGVAEHHDGEAIDQLFSRVDK 387

Query: 243 ALYVAKKSGRNRV 255
           ALYVAK  GRNRV
Sbjct: 388 ALYVAKNGGRNRV 400


>gi|170697268|ref|ZP_02888362.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria IOP40-10]
 gi|170137888|gb|EDT06122.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria IOP40-10]
          Length = 667

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 93/192 (48%), Gaps = 19/192 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDID 137
           SG  + E   +  R+++L+  D L+GL N  A    +G+           ++ I+F D+D
Sbjct: 218 SGIDVTEERNAQQRLTELANTDMLTGLPNRHAISERIGAALAADRTDMRGQVGILFLDLD 277

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAA 193
            FK++ND++GH  GD+++  +S  +     +   + RLGG+EF       +    E  A 
Sbjct: 278 NFKRVNDHYGHITGDRLLQDVSTIISGCLPSGATLARLGGDEFLVLFEHGTRPLLEATAQ 337

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
           I+   LR  I    +       ++ + S GIA    H + + T+I  AD A+YVAK+ G+
Sbjct: 338 IILERLRTPIHLGLM------EVYTSCSIGIAMYPQHGDSLETLIRSADTAMYVAKEEGK 391

Query: 253 NRVVCFSDIENN 264
           +    FS   N 
Sbjct: 392 HTYRVFSLEMNQ 403


>gi|158314174|ref|YP_001506682.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EAN1pec]
 gi|158109579|gb|ABW11776.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EAN1pec]
          Length = 754

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 62/267 (23%), Positives = 116/267 (43%), Gaps = 23/267 (8%)

Query: 12  WLCHEK---NLESFSPHTFMIYFSIFFS--------IFIATVIFIANIFLFYIGLTPFYG 60
           WLC  +   +LES +P ++ + ++ + +        IF+  V   A   L  I ++    
Sbjct: 214 WLCSCRCPLSLES-APDSWRVRWAGWRAGPGVRWVRIFLPYVPLSALGVLAVIQMSTEAR 272

Query: 61  LEYILVENLSLVIISITISLLLGYISGS-ILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +E I +  +  +++ + I  +L       +L  +  S  ++   +  D L+GL N   F 
Sbjct: 273 VEPIEIYGIFALVLMVLIRQMLTLADNQKLLDRVQRSRRQLRHQALHDPLTGLANRVLFG 332

Query: 120 SS-----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
                        +L+++F D+D FK +ND  GHP GD+++   + +L+        V R
Sbjct: 333 DRVEEAVARRARGRLALLFCDLDDFKSVNDTLGHPAGDELLRITARRLLGCVPPSDTVAR 392

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI- 233
           LGG+EFA      +    A+       ++        +G    I  S G+        I 
Sbjct: 393 LGGDEFAVLLADDAADAEAV-GKRAAAVVRAPCF--LAGQPCAIHASLGLTVTVPGSSIS 449

Query: 234 -STIIYRADQALYVAKKSGRNRVVCFS 259
              ++ +AD A+Y AK+ G+N +V + 
Sbjct: 450 AEDLVQQADLAMYAAKRRGKNSLVVYD 476


>gi|187777039|ref|ZP_02993512.1| hypothetical protein CLOSPO_00584 [Clostridium sporogenes ATCC
           15579]
 gi|187773967|gb|EDU37769.1| hypothetical protein CLOSPO_00584 [Clostridium sporogenes ATCC
           15579]
          Length = 892

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 63/214 (29%), Positives = 103/214 (48%), Gaps = 10/214 (4%)

Query: 61  LEYILVENLSLVIISITISLLLGYISG--SILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           LE I +E L     ++  S+ L Y +   + + E      +I  L+  D L+GL N    
Sbjct: 427 LEEIYIEELRKWFSAVVYSMELDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKI 486

Query: 119 ISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           I ++        N++ +++F D+D+FK IND  GH VGD V+  +S +  ++ G    +G
Sbjct: 487 IETINKTIKNYRNKRFAVLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLIGPNHKIG 546

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           RLGG+EF    + +S  +A  LA  +   + N  I       + I  S GI+      + 
Sbjct: 547 RLGGDEFIIVQIINSISDAEKLAGKICTTL-NHPIKYKED-DLFIGASIGISVYPEDGKD 604

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            ST++  AD A+Y AKK+G  +   +S   N   
Sbjct: 605 TSTLMKNADAAMYAAKKNGGYKYEVYSRSMNERA 638


>gi|16331713|ref|NP_442441.1| PleD-like-protein [Synechocystis sp. PCC 6803]
 gi|1001267|dbj|BAA10511.1| slr0829 [Synechocystis sp. PCC 6803]
          Length = 829

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 61/181 (33%), Positives = 87/181 (48%), Gaps = 11/181 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
            L     ++SQL  ID L+ + N   F          L      +S++ FDID FK  ND
Sbjct: 641 RLERFNKKLSQLIDIDGLTKIANRRCFNVRIKQEWRRLSRAQVPISLIMFDIDCFKNYND 700

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GHP GD  +  ++             V R GGEEFA     +  + A ++A  + + I
Sbjct: 701 RYGHPEGDLCLIRVAQAARKAASRPADLVARFGGEEFAVLLPETDTKGAIMVAEKIIQAI 760

Query: 204 ENSQINISSGP-SIHITISAGI-AERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSD 260
               I   + P S  ITIS GI  +   KE IS T+I +AD ALY AK+ GRN+ V +++
Sbjct: 761 SQLAIAHEASPISGQITISLGIGTQFPSKELISRTLIKQADMALYEAKRRGRNQYVVWTE 820

Query: 261 I 261
            
Sbjct: 821 E 821


>gi|313682781|ref|YP_004060519.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM
           16994]
 gi|313155641|gb|ADR34319.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM
           16994]
          Length = 772

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 11/176 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDN 145
           L +  N++ +L+ ID L+ + N   F          +   ++ L+I+  D+D+FK+ NDN
Sbjct: 596 LKLKNNQLKELAMIDGLTQIANRRFFDQMYEKSYKEVLRDHKTLAILMIDVDHFKRYNDN 655

Query: 146 FGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD  +  ++  L          + R GGEEF         + A  ++  L K +E
Sbjct: 656 YGHAKGDACLIAIAKVLKKSLKRPSDVIARYGGEEFVVLLKSIDFEGAKQVSLSLVKAVE 715

Query: 205 NSQINIS-SGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVC 257
             +I+   S  + HITIS G+A +  +E I   +++ +AD ALY AK  GRNRV  
Sbjct: 716 GLKISHEYSSAADHITISIGMAFKEAEEEITKESLLKKADDALYEAKAGGRNRVSV 771


>gi|300716694|ref|YP_003741497.1| conserved uncharacterized protein [Erwinia billingiae Eb661]
 gi|299062530|emb|CAX59647.1| conserved uncharacterized protein [Erwinia billingiae Eb661]
          Length = 378

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 115/252 (45%), Gaps = 18/252 (7%)

Query: 23  SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGL---TPFYGLEYILVENLSLVIISITIS 79
           +P  + +   +  S   A   + + + LF + +   T    L+     NL    + +  +
Sbjct: 126 TPLAYPLSSILMMSALAALYYWPSGLLLFVVPIWLATVAGNLQVNAGLNLRFSAVCLIFT 185

Query: 80  LLL--------GYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYN 126
           L+L        G+ + + L+  E  +  +R+  L+  D L+G  N  A    L    S  
Sbjct: 186 LILIYGRYMLQGWFNEAWLRFQENQLLISRLDTLAHQDVLTGTANRRALEDHLHNAVSRQ 245

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAAL 185
               ++  D+DYFK+ ND++GH  GD  +A ++  L      +   V R GGEEF     
Sbjct: 246 ASFELIMLDVDYFKRYNDHYGHQAGDVCLAEVAAVLKTAVRTSEDLVARYGGEEFVVMLF 305

Query: 186 GSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
           G++ Q A  +A  ++  ++ + +    S  S  +T+S GIA     + ++ I+  AD AL
Sbjct: 306 GATPQGAEQIAERIQANLQQAHLRHERSDVSDTVTVSMGIASSDGSKGVAQILAEADAAL 365

Query: 245 YVAKKSGRNRVV 256
           Y AK+ GRNR  
Sbjct: 366 YRAKEQGRNRWC 377


>gi|297537600|ref|YP_003673369.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297256947|gb|ADI28792.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylotenera sp. 301]
          Length = 861

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 11/186 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S +  +  +   I   +  D L+ L N   F   L               ++F DID+FK
Sbjct: 418 SDISAIKEAEELILNQANYDQLTKLPNRRLFNDRLEQEIKKSQREKHSTVLLFVDIDHFK 477

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND  GH +GD+++   + ++         V RLGG+EF      +  ++   +A   +
Sbjct: 478 EVNDTLGHDMGDRLLIDAAMRIKSCVRDSDTVARLGGDEFTIIL--TDLKDNLSIAQIAQ 535

Query: 201 KIIEN-SQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
            II + S++         ++ S GIA        I  ++  ADQA+YVAK +GR     F
Sbjct: 536 NIISSLSEVFHLGTRKAFVSASIGIAFYPEDATNIVELLKIADQAMYVAKSAGRGCYRFF 595

Query: 259 SDIENN 264
           +     
Sbjct: 596 TKAMQQ 601


>gi|91778190|ref|YP_553398.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia xenovorans LB400]
 gi|91690850|gb|ABE34048.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia xenovorans LB400]
          Length = 728

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 7/177 (3%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQIND 144
             + E   +  R+ +L+ ID L+ L N +     +     K    S++  D+D FK +ND
Sbjct: 280 RDITERRQNEERLLRLAHIDPLTELPNRTMLREQVELALSKEMTASVMMVDLDGFKDVND 339

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
           + GH  GD V+  ++ +L     +   V R+GG+EFA    G     EA  +A+ +   +
Sbjct: 340 SLGHSGGDAVLVNVARRLQACARSGDTVARMGGDEFAILLPGLPDAVEAGQIADSVIAAV 399

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
             SQ+    G  ++I  S GIA        +  ++  AD ALY AK  GR+    FS
Sbjct: 400 --SQLLTIDGQPVNIGASIGIAMFPGDGLTVRELLSSADLALYQAKAEGRHCRRFFS 454


>gi|323487729|ref|ZP_08092987.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Planococcus donghaensis MPA1U2]
 gi|323398463|gb|EGA91251.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Planococcus donghaensis MPA1U2]
          Length = 776

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 107/225 (47%), Gaps = 13/225 (5%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISIT-ISLL------LGYISGSILKELFISYNRISQLS 104
           ++  TP +  E  LV+    +I ++  ++ +      +   +   + +   +    + L+
Sbjct: 274 FLKRTPIHNFEAELVDQEGHIISTLVNVNFVEREGKKISICAIQDISDRKKAEEESTYLA 333

Query: 105 RIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
             D L+GL N   F   L S+    ++++++F D+D FK +ND  GH VGDK++  ++ +
Sbjct: 334 YHDTLTGLPNRLQFTEKLNSFVELEQEIAVLFIDLDKFKMVNDTRGHTVGDKLLQQIAKR 393

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L+        V R+GG+EF    LG ++ E + +   + + I            +++  S
Sbjct: 394 LISCVSRGDIVSRIGGDEFTIILLGRTKFEVSRIVERILEEIRKPIF--IDQHELYLRSS 451

Query: 222 AGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            GI+      E I ++I  +D A+Y +K  G N    F++  N++
Sbjct: 452 IGISFYPSDGENIESLIKNSDIAMYNSKVLGGNNYKFFTNSMNSS 496


>gi|239831061|ref|ZP_04679390.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239823328|gb|EEQ94896.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 707

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 87/177 (49%), Gaps = 9/177 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQI 142
            + E      R++ ++  D L+GL N + F   + S       +E  ++ + DID+FK I
Sbjct: 257 DVTERREIEERMAHIAMHDSLTGLPNRAYFAHHVESLLKKGGDSEPFALFYLDIDHFKNI 316

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+ GH  GD+++  ++ +L  +     F+ RLGG+EFA      +  + A+ A+ +   
Sbjct: 317 NDSIGHQAGDQLLQEVARRLKQITTPDEFIARLGGDEFAIVYRSGTLGQIAMFADRVLSA 376

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            ++S      G S  +T S GI++   H +    ++  AD ALY +K  GR     +
Sbjct: 377 FQDS--FKLVGNSEFVTCSMGISQAPLHGDNPDALMRNADLALYASKSGGRRTFRFY 431


>gi|49083990|gb|AAT51164.1| PA3177 [synthetic construct]
          Length = 308

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 8/163 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q +  D L+G  N  A   +LG   E        LS++  DID+FK++ND++GH VGD+ 
Sbjct: 145 QTALRDALTGTGNRIAMDQALGRELELARRNLQPLSVLMLDIDHFKRVNDHYGHAVGDEA 204

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +++ +         V R GGEEF      +  Q A ++   LR+ +E       +G 
Sbjct: 205 LKAVAETIKDHLRNVDMVFRFGGEEFLVLLSSTPLQAACMVGERLRQAVEELDYRH-AGE 263

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + ++IS G A+    E    ++ R D+ALY AK+ GRNR+ C
Sbjct: 264 PLKLSISLGCADLRPGEGSDDLLRRVDEALYEAKRDGRNRLRC 306


>gi|83592879|ref|YP_426631.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodospirillum rubrum ATCC 11170]
 gi|83575793|gb|ABC22344.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodospirillum rubrum ATCC 11170]
          Length = 764

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 89/184 (48%), Gaps = 12/184 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQ 141
            + E     + +   +  D L+GL N    +            ++ +++++F DID FKQ
Sbjct: 298 DVTERKAIESELYHRANYDALTGLPNRQLLLDRVSTALDLARRHDRRVAVMFMDIDRFKQ 357

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLR 200
           IND+ GH  GD ++   + +L  V      +GRLGG+EF   A G   E EA  LA+ L 
Sbjct: 358 INDSMGHAAGDVLLKQAASRLAAVLRPQDTLGRLGGDEFLVVAPGLRWESEATALASRLL 417

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++    +     G  +++++S G++           ++  AD A+Y+AK  GR+    F+
Sbjct: 418 EVAR--RPFTIDGREVYVSVSIGVSLGPVDGTTAQALMRNADAAMYLAKGGGRDAAHFFT 475

Query: 260 -DIE 262
            DIE
Sbjct: 476 PDIE 479


>gi|307824661|ref|ZP_07654885.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307734315|gb|EFO05168.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 1028

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 17/213 (7%)

Query: 64  ILVENLSLVIISITISLLLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +  + LS++  ++    +  Y++  S + +   +   I  L+  D L+ L N       L
Sbjct: 544 VYPQWLSIIAATVEGKQVTHYVATFSDISQKKQAEETIHNLAFYDPLTDLPNRRLMQDRL 603

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                    ++   +I+F D+D FK++ND  GH +GD ++  ++ ++         V RL
Sbjct: 604 QQALAFSARHHNHGAILFIDLDNFKELNDTKGHHIGDLLLIEIATRMQACVRADDTVSRL 663

Query: 176 GGEEFAAAALGSSEQEAAI------LANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
           GG+EF       S            +A  +R  I+  Q     G   H + S GI+   +
Sbjct: 664 GGDEFLIILGELSVAAEEAAVQAETVAEKIRAAID--QPFDLQGHEYHSSSSIGISLFLN 721

Query: 230 KE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            E     ++ R+D A+Y AK+SGRN +  F   
Sbjct: 722 HELTADELLKRSDIAMYQAKRSGRNAIRFFDPA 754


>gi|148262139|ref|YP_001228845.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Geobacter uraniireducens Rf4]
 gi|146395639|gb|ABQ24272.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Geobacter uraniireducens Rf4]
          Length = 467

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 91/183 (49%), Gaps = 11/183 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           I    + E  ++  R+ Q++  D L+ L N + F       +     Y    ++++ D+D
Sbjct: 277 IIFRDITERTLAKRRLEQMAHYDTLTSLPNRALFFDRFTTMLEQAKRYGTAFALLYLDLD 336

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILA 196
            FKQ+ND+ GH VGD ++  ++++L         V R+GG+EF       +E ++AA++A
Sbjct: 337 SFKQVNDSLGHDVGDLLLKKVTERLTGNLRKSDTVARMGGDEFTVILSRINEREDAAVVA 396

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             +  ++ +   ++  G    I +S GI+      +   T++  AD A+Y AK+S R + 
Sbjct: 397 RKIIYVL-SMPFDLK-GNQCSIGVSIGISVFPDDGDDTETLLKNADTAMYSAKESDREKY 454

Query: 256 VCF 258
             +
Sbjct: 455 QYY 457


>gi|119900066|ref|YP_935279.1| GGDEF family protein [Azoarcus sp. BH72]
 gi|119672479|emb|CAL96393.1| GGDEF family protein [Azoarcus sp. BH72]
          Length = 475

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 7/162 (4%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ LLN                + ++  +++  D+D+FKQIND  GH  GD+V+  ++
Sbjct: 314 DALTQLLNRRFLPAILTRETEIARNQHKSFALLLVDVDHFKQINDVHGHDAGDRVLQQIA 373

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L+    +  FV R GGEEF    +    Q AA +A  +R+ ++     +     + +T
Sbjct: 374 SLLLNTVRSGDFVFRYGGEEFLVLLVEVDRQHAARVAEKIRQRVQQETFLLPDSRQLQVT 433

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            S G+A          +I +AD ALY AK  GRNR    +D 
Sbjct: 434 ASVGVALHDGHPDYQRLINQADDALYRAKTGGRNRCEFATDA 475


>gi|330966967|gb|EGH67227.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 528

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 88/205 (42%), Gaps = 20/205 (9%)

Query: 81  LLGYISGSILKE---------LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124
           L+ +I   I  E         L      +  ++  D L+GL N   F             
Sbjct: 301 LIKHIHSRIRAEDQLLESQAALIQLNRHLEFIASEDKLTGLANRRRFDQFLDVEFKRARR 360

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAA 183
               LS++  D D+FK+ ND+FGH  GD+ +  L+  +      P     R GGEE A  
Sbjct: 361 ERNMLSLILMDADHFKRYNDHFGHLAGDECLVALARLVEQCIRRPGDVAARYGGEEIAVV 420

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRA 240
             G+ E  A  +A  + + I + QI   + P   +T+S G+A             +I  A
Sbjct: 421 LPGTDEASARQVAESILQAIRDEQITHPASPFGIVTVSLGVATVIGSNRQISQRGLIELA 480

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D+ALY AK  GRNRV   S+I  NT
Sbjct: 481 DRALYAAKSQGRNRVNVASEIALNT 505


>gi|284050110|ref|ZP_06380320.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Arthrospira platensis str. Paraca]
          Length = 1091

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 16/198 (8%)

Query: 83  GYISGSI-----LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLS 130
           GYI+  I     + +   +   ++  +  D L+ L N +     L          +  ++
Sbjct: 639 GYITHFIAVKEDITQQKHNEEILAHQANYDALTDLPNRTLIFERLRQAIIQAQVNHSNVA 698

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSE 189
           ++F D+D+FK IND  GH +GD ++     +L     T   VGRLGG+EF          
Sbjct: 699 VMFIDLDHFKNINDTLGHELGDFLLKEAGMRLKGCLRTTDTVGRLGGDEFLVIIPNLDDL 758

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAK 248
            +A  +A  +  ++   +     G    I+ S GIA         ST++  AD  +Y AK
Sbjct: 759 IQAEYIATQVLGVL--GEPFNLCGEEAFISASIGIASYPQDGNNASTLVRNADTGMYAAK 816

Query: 249 KSGRNRVVCFSDIENNTC 266
           + GRN    F+   N+  
Sbjct: 817 QEGRNVFAFFTQNMNDEA 834


>gi|220932964|ref|YP_002509872.1| diguanylate cyclase [Halothermothrix orenii H 168]
 gi|219994274|gb|ACL70877.1| diguanylate cyclase [Halothermothrix orenii H 168]
          Length = 510

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 60/184 (32%), Positives = 91/184 (49%), Gaps = 9/184 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           I  ++  +    YN+  +++  D L+GL N   F+  +  Y       N  LSI+  DID
Sbjct: 324 IQAAMAIDNANLYNKTQKMAITDGLTGLYNQRYFLEVIDKYFKTAREKNRHLSILIMDID 383

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK  ND  GH  G+  ++ L+D +           R GGEEFA     ++  EA  LA 
Sbjct: 384 NFKNYNDVNGHLAGNTALSRLTDIIKKSIRKKDVPCRFGGEEFAVLFPDTTRDEAYNLAE 443

Query: 198 DLRKIIENSQI-NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
            +RK IE +   N    P   +T+S G+A      + +  ++ +ADQALY AK +G+NR+
Sbjct: 444 TIRKNIEKTPFYNEDVQPGGRLTVSLGLAIFPDDSQEVKDLLDKADQALYKAKNNGKNRI 503

Query: 256 VCFS 259
             FS
Sbjct: 504 EFFS 507


>gi|94265549|ref|ZP_01289296.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|93453949|gb|EAT04299.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
          Length = 730

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 78/196 (39%), Gaps = 21/196 (10%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           + +E       I +L+  D L+ L N       L           +  +++F D+D FK 
Sbjct: 274 LEQEKRAKEAEIERLAFYDFLTDLPNRRLLQDRLEQAFAASERSGQYGAVIFLDLDNFKN 333

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG------SSEQEAAIL 195
           +ND  GH  GD ++   + +L         V RLGG+EF            ++      +
Sbjct: 334 VNDTRGHRTGDLILQMTARRLRDTVREDDTVARLGGDEFVILLSNLATQSETAISRVGRV 393

Query: 196 ANDLR-------KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247
           A  +R       K+I+  Q +       H+  S GIA  R H+     +   AD A+Y A
Sbjct: 394 AEKIRLALARPFKLIKPQQGSSLESGEFHLGASLGIALFRGHENSAEELFKYADTAMYRA 453

Query: 248 KKSGRNRVVCFSDIEN 263
           K++GRN    F     
Sbjct: 454 KEAGRNTARFFDPAMQ 469


>gi|330988078|gb|EGH86181.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 509

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 12/186 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIV 132
           L L ++    L+    + + ++ L+  D L+GL N                   ++LS++
Sbjct: 312 LWLTWLLCRELRRRHRAEDALASLAATDGLTGLDNRRQLDEAMETEWARAQRSGKQLSLL 371

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQE 191
             D+D+FK  N+   H  GD+ +  ++  +   +      V R GGEEF      +    
Sbjct: 372 MIDVDHFKAFNERHDHQGGDEALRLIAQTISFNIRRPGDRVARYGGEEFVVVLPETDLPG 431

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKK 249
           A ++A  +RK  E+  +    G    IT+S G+        + +      AD+ALY AK 
Sbjct: 432 AMMIAEQIRKAAESLPLFP--GAQQPITVSIGVVSEMVRQGDKLEAFFGIADKALYQAKH 489

Query: 250 SGRNRV 255
            GRNRV
Sbjct: 490 KGRNRV 495


>gi|312966728|ref|ZP_07780946.1| uncharacterized protein ydaM [Escherichia coli 2362-75]
 gi|312288192|gb|EFR16094.1| uncharacterized protein ydaM [Escherichia coli 2362-75]
          Length = 430

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 75/175 (42%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 258 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 316

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 317 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 376

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +    I   SG    I +S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 377 VSVAKVSI---SGLPRFI-VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 427


>gi|237800663|ref|ZP_04589124.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331023522|gb|EGI03579.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 706

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 54/214 (25%), Positives = 98/214 (45%), Gaps = 13/214 (6%)

Query: 64  ILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +LV +L+++ I++   LL  ++      +   L  +   ++ L+  D L+GL N      
Sbjct: 220 VLVTSLAVLSITLLTCLLDSHLEARTAVLANSLTQANLELTHLALHDKLTGLPNRVLLTD 279

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            +    +K        +++F D+D FK +ND FGH VGD ++  ++ +L         + 
Sbjct: 280 RIEHAMQKTREQGGCFALMFMDLDGFKPVNDAFGHHVGDLLLRQVAIRLRENLHREDTLA 339

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           R+GG+EF      +  QEA ++A     +I  S      G  + I++S GI     +   
Sbjct: 340 RVGGDEFVLLVELNDPQEATLVAARQVSVI--SHPFEIGGHQLQISLSIGICVYPGNGVT 397

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              ++  AD A+Y  K +G+N   CF    N+  
Sbjct: 398 QHELLVNADAAMYHTKAAGKNGFSCFDASMNSNA 431


>gi|144899939|emb|CAM76803.1| protein containing a membrane domain, an EAL and a GGDEF domain
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 913

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 10/182 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
                 +I   +  D L+ L N +  +  L            ++ ++F D+D FK IND+
Sbjct: 463 RKEQDRKILHQALYDGLTDLPNRAMALDRLTVATEEARDAGTRVGLLFVDLDDFKGINDS 522

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD+++   S++L    G    V R GG+EF       S ++A   A+ + +    
Sbjct: 523 LGHEYGDELLILASERLCQAVGEGGMVARFGGDEFLVILPLVSPEQAEWAADRIVQAF-- 580

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            +    S   +  T S G+A          T++  AD A+Y +K +GRNR  CF+   N+
Sbjct: 581 VEPFTISRRDLITTASIGVALYPEDGRTPQTLLRNADIAMYQSKLAGRNRYCCFTARMND 640

Query: 265 TC 266
             
Sbjct: 641 EA 642


>gi|315445609|ref|YP_004078488.1| diguanylate cyclase (GGDEF) domain-containing protein
           [Mycobacterium sp. Spyr1]
 gi|315263912|gb|ADU00654.1| diguanylate cyclase (GGDEF) domain-containing protein
           [Mycobacterium sp. Spyr1]
          Length = 299

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 11/180 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           IS   +    ++ ++   L+  D L+GL N   F   L             ++++  D+D
Sbjct: 117 ISHIDITRRKLAEDQAQHLAMHDPLTGLANRRYFNRILHREVRRSRRNGSPITVIAIDVD 176

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
            FK+ ND FGH  GD  +  LS  L+           R+GG+EFA     S   +A  +A
Sbjct: 177 NFKKYNDEFGHLAGDHCLQELSTVLLGAARRPSDLAARIGGDEFAVLCGDSDAADAQAIA 236

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255
             + K   + +I    G S  +T+SAG+A      E    ++  AD+ALY AK++GRNRV
Sbjct: 237 ESIVKEFADLRIGF--GASEPVTVSAGVATMIPRDEDEKWLVNEADKALYNAKRAGRNRV 294


>gi|220934553|ref|YP_002513452.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995863|gb|ACL72465.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 332

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 108/228 (47%), Gaps = 17/228 (7%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISIT------ISLLLGYISGSILKEL--FISYNRI 100
            L +    P  G+   + +N++ + +S        I +++  ++     +L    +   +
Sbjct: 92  LLRFRNYRPITGVAEYMYQNVTFLPLSSPDGAVDHIGVIVYDVTDIATNKLSLEKANEEL 151

Query: 101 SQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           + LSR D L+ L N   +             Y    S++ FDID+FK++ND +GH  GD+
Sbjct: 152 ACLSRTDRLTQLNNRGFWEECLGGEFARCKRYGTVSSLIMFDIDHFKKVNDTYGHQAGDE 211

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           VI  +S  L          GR GGEEF      +S ++A + A+ LR++ E   +     
Sbjct: 212 VIRTVSQLLTKTLRDTDIAGRYGGEEFGVILTDTSAEKARVFADRLRRLNEAVTVRHED- 270

Query: 214 PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +I  TIS GIA+     E  S  I  AD+ALY++K+ GRNRV    +
Sbjct: 271 VAIRFTISLGIAQFDPAMERHSQWIEAADKALYLSKQGGRNRVTVAGE 318


>gi|170740930|ref|YP_001769585.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium sp. 4-46]
 gi|168195204|gb|ACA17151.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium sp. 4-46]
          Length = 793

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 10/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + E   +  RI+ ++  D L+ L N   F   +               ++  D+D FK 
Sbjct: 359 DVTERRRAEARITHMAHHDALTDLPNRVLFRQRIVAALEAQARDGRSAGLLCLDLDRFKL 418

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GHP GD+++   + +L         V RLGG+EFA  A     +     A  +  
Sbjct: 419 VNDTLGHPAGDELLRQAAQRLASCAQDGS-VARLGGDEFALLAPADGPEAVMATARRVIA 477

Query: 202 IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +      + +G ++ +  S G+A           ++ RAD ALY AK +GR   V F  
Sbjct: 478 ALAQQPF-LVAGQAVQVGASVGVALLPADGTDPDVLLRRADMALYAAKAAGRGTAVAFEP 536

Query: 261 IENNT 265
             +  
Sbjct: 537 AMDEA 541


>gi|187925942|ref|YP_001897584.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia phytofirmans PsJN]
 gi|187717136|gb|ACD18360.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia phytofirmans PsJN]
          Length = 362

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 83/177 (46%), Gaps = 10/177 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+GL N       L +   +       L  +  D+D FK  N
Sbjct: 184 QQLLATNLELQRLTHSDGLTGLSNRRYLDQYLAAEWRRSTREKTGLGFLMIDVDNFKAYN 243

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+V+  ++  +    G P     R GGEEFA    G+S     +LA  +R  
Sbjct: 244 DTYGHVAGDEVLKTVAHTVESCLGRPADLAARFGGEEFAVVVPGTSSGGLRLLAEKIRIA 303

Query: 203 IENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
           IE   I  S   +  +TIS G A       EP++ +I  AD  LY AK+ G+N+V  
Sbjct: 304 IEGLAIPHSGSATGIVTISIGAATLVPTVAEPVTKLIEAADVGLYRAKRDGKNQVAV 360


>gi|160877209|ref|YP_001556525.1| GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella baltica OS195]
 gi|160862731|gb|ABX51265.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           baltica OS195]
 gi|315269413|gb|ADT96266.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           baltica OS678]
          Length = 882

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 17/184 (9%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--------EKLSIVFFDIDYFKQ 141
           +++      ++   ++ D L+GL N + F+  L            E+ +++F D+D FKQ
Sbjct: 438 IQQRRSMEAKLVHDAKHDALTGLPNRAMFMERLSQAIKHVRRHSLEQFALLFIDLDRFKQ 497

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-----LGSSEQEAAILA 196
           IND  GH  GDK +   + +L         + RLGG+EF         +  +   +  + 
Sbjct: 498 INDTMGHLEGDKFLIETASRLKSCIRDNDTLARLGGDEFVILLDSINNINDARDVSERVI 557

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             + +      +  +SG SI ITIS     +   +   +++  AD A+Y AK +G+   V
Sbjct: 558 QKISQPYRLGTMEFNSGASIGITIS----GKHKVDTSESMLRNADTAMYQAKANGKGCYV 613

Query: 257 CFSD 260
            F D
Sbjct: 614 IFDD 617


>gi|74316654|ref|YP_314394.1| diguanylate cyclase [Thiobacillus denitrificans ATCC 25259]
 gi|74056149|gb|AAZ96589.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 559

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 85/172 (49%), Gaps = 10/172 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L ++  R+  L+ +D L+G+ N   F       IS        LS++ FDID+FK +ND 
Sbjct: 373 LEVANRRLKALASVDSLTGISNRRHFVEQAKAEISRARRQGLPLSVIMFDIDFFKTVNDR 432

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GD+ +  L+  +           RLGGEEF     G    +A   A+ +R ++  
Sbjct: 433 FGHEAGDQTLKALTSTVSGNLRAGDIFARLGGEEFILMLPGQGLGDAVQTADRVRALVAE 492

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +         + IT+SAG+A     E +  ++ +AD+ALY AK  GR+RV  
Sbjct: 493 TSRTHY---PVPITLSAGVAGLAGSEDLDGLLRQADRALYAAKHQGRDRVCV 541


>gi|71279397|ref|YP_270237.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71145137|gb|AAZ25610.1| sensory box sensor/GGDEF/EAL domain protein [Colwellia
           psychrerythraea 34H]
          Length = 1071

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 95/212 (44%), Gaps = 11/212 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  E L++ ++       L YIS  S + +       I   +  D L+GL N    +  L
Sbjct: 594 IYPEFLAISVVRDQDKKPLQYISLFSDITKHKKYEEDIWLQANYDSLTGLPNRGLCVERL 653

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   + + +++++F D+D FK +ND +GH  GD+++   + +L         V R 
Sbjct: 654 HNKLKGDKAEDSEVALLFIDLDRFKFVNDTWGHSSGDELLKLAAIRLRNCIREKDTVARF 713

Query: 176 GGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF    +G S + A   +  ++   + +   ++ +     ++ S G+       + +
Sbjct: 714 GGDEFVVLLVGLSNRFAIERVVKNILTSL-SMPFHLRNNNEAVVSASIGVTIGPVDGDNV 772

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             ++  AD A+Y AK +GRN    F+   N T
Sbjct: 773 ELLLKNADTAMYQAKAAGRNTFQFFTKSMNET 804


>gi|268680809|ref|YP_003305240.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618840|gb|ACZ13205.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 1196

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 97/221 (43%), Gaps = 19/221 (8%)

Query: 56  TPFYGLEYILVENLSLVIISITISLLL---GYIS-----GSILKELFISYNRISQLSRID 107
           T + G  +   ++ +L    + I  +L   G+IS        +  L  +  ++ Q +  D
Sbjct: 714 TAWQGELWNKRKDGTLYPALLIIHPILNREGHISYIVFIQHDISVLKHNEEKLHQQAYYD 773

Query: 108 CLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+ L N +     L        S    +S++F D+D FK IND  GH +GD ++  ++ 
Sbjct: 774 PLTKLANRTLAYDRLQHAITNAKSRRRLVSVLFLDLDKFKNINDTLGHDIGDLLLIEVAK 833

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHIT 219
           ++  +      V RLGG+EF       +  + A  +A  +   +  SQ     G +I  +
Sbjct: 834 RIQALCSQSDTVCRLGGDEFLVILEDITHYETAISVAKGIIAAL--SQPFYLEGRTISTS 891

Query: 220 ISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            S GI       + + T++  AD A+Y +K +GR     F+
Sbjct: 892 TSIGITYYPNDGDTMKTLLKNADIAMYRSKTNGRGSYEIFT 932


>gi|291615079|ref|YP_003525236.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1]
 gi|291585191|gb|ADE12849.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1]
          Length = 355

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 75/252 (29%), Positives = 113/252 (44%), Gaps = 11/252 (4%)

Query: 20  ESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS 79
           ES     +M+ F I F+  +AT   +  I +  +GLT    L    +  +S  +  I   
Sbjct: 90  ESLHQEVWMMIFPIAFAPIVATRERLIWIVIGAVGLTSVMMLRPEPLTTISTFVFVIAY- 148

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132
           L LG+I+  +++    +  R++ LS ID L+   N           I+      + L+ +
Sbjct: 149 LTLGFITMMLVRHNEQNIERLAHLSIIDPLTRAYNRGYLKDVMVSEINRCRRSGQALTAI 208

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
             DIDYFK  ND +GH  GD V+  ++D L         +V R GGEEF     G +  E
Sbjct: 209 MLDIDYFKMFNDAYGHLYGDSVLEQVADALKRSAQRAGDYVFRYGGEEFCIITSGLNRDE 268

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKK 249
           +      LR  I    I     P   +T SAG   A    +   S ++  AD ALY AK 
Sbjct: 269 SMQFTEKLRCCILELNIENQRSPHRRLTASAGFWCASDLGEVTPSAMLLNADNALYRAKA 328

Query: 250 SGRNRVVCFSDI 261
           +GR+ VV F ++
Sbjct: 329 AGRDLVVDFDEM 340


>gi|228955813|ref|ZP_04117792.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228803860|gb|EEM50500.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 620

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 10/205 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           IL   +++V I I       Y+    +  +      I+ L+  D ++ + N   F   L 
Sbjct: 153 ILFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELD 212

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     +K  +++ D++ FK IND  GH +GDKV+  ++ +        + + R+G
Sbjct: 213 RSIKRAQKTQDKFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIG 272

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           G+EFA      +EQ+   L   L +I E  +  + +  S ++++S GIA         +T
Sbjct: 273 GDEFAIIVHNQTEQQLLDLCKTLFRITE--EPFVVNQHSFYLSLSIGIAVYPFGGINTTT 330

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++  AD A+Y AK+ G N V  + +
Sbjct: 331 LLQHADIAMYSAKEKGNNAVCMYDE 355


>gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [Janthinobacterium sp. Marseille]
 gi|151282196|gb|ABR90606.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 956

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 11/191 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           ++   +       + +   +  D L+GL N S     L         YN  + I F D+D
Sbjct: 500 VALYDITATKRYESELEFQTNRDALTGLANRSLLRDRLSQAISYAHRYNHPIWIAFVDLD 559

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LA 196
            FK +ND  GH  GD ++  ++++L         V R+GG+EF        +   +  + 
Sbjct: 560 RFKFVNDTLGHQAGDLLLKAIAERLQHAVRDTDTVSRMGGDEFVLILPERVDAGLSTGIV 619

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             +   I   Q     G    I+ S G+A   +       +I  AD A+Y AK++GRN  
Sbjct: 620 QRIMDGIA--QPLTIEGHEFFISSSIGVAVYPNDGVTPEELIKHADIAMYRAKETGRNNF 677

Query: 256 VCFSDIENNTC 266
             ++   N   
Sbjct: 678 QFYTSSMNERA 688


>gi|221067871|ref|ZP_03543976.1| diguanylate cyclase [Comamonas testosteroni KF-1]
 gi|220712894|gb|EED68262.1| diguanylate cyclase [Comamonas testosteroni KF-1]
          Length = 400

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 66/273 (24%), Positives = 119/273 (43%), Gaps = 26/273 (9%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIF----IATVIFIANIFLFYIGLT 56
           +  SL   L I   H K +        +++ SI F+++     A +  +    L Y+  +
Sbjct: 127 LASSLVLALPILQVHSKKISFDLLDKSLLWLSIIFTVYNLTRPALIWLLGYTDLRYLPSS 186

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           P++ L    V   S +   +  ++ +             + +++ +    D L+ LLN  
Sbjct: 187 PYWILTLYSVLGFSFLFTVVMTAIAV-----------KETVDKLRKERDFDALTKLLNRR 235

Query: 117 AFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           +F      +     +  ++++  DID+FK+IND +GH  GD V+  ++  L         
Sbjct: 236 SFQEHAQRHLTDMRSYPMAMLACDIDHFKRINDTWGHERGDMVLQLVATTLQNNVREHDL 295

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
           V R GGEEF       + QEA  +A  +R  + +    + + P   +T+S G++      
Sbjct: 296 VARFGGEEFVLLLASITLQEAEFIAQRIRSDLGSKNTVLPNAP--KLTMSFGVSLITKPS 353

Query: 232 PISTIIYRADQALYVAKKSGRNRV----VCFSD 260
                +  ADQ LY AK +GR+RV    VC+ D
Sbjct: 354 QFEQAMKEADQLLYQAKNAGRDRVHVSGVCYQD 386


>gi|300865286|ref|ZP_07110100.1| putative GGDEF domain protein [Oscillatoria sp. PCC 6506]
 gi|300336759|emb|CBN55250.1| putative GGDEF domain protein [Oscillatoria sp. PCC 6506]
          Length = 566

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 11/188 (5%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIV 132
           + L      +   L I+  ++ +L+  D L+G+ N   F  +L     +       LS++
Sbjct: 373 VALAIQQSELYGHLEIANRKLQRLATTDELTGIANRRQFNRALNLEWRRCARELVSLSLI 432

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQE 191
             DID+FK  ND +GHP GD  +  ++  +   +        R GGEEF      +S + 
Sbjct: 433 ICDIDFFKLYNDCWGHPAGDACLVRVACAIATSIKRPADLAARYGGEEFTVLLPNTSIEG 492

Query: 192 AAILANDLRKIIENSQINIS-SGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAK 248
           A  +A  +R  +E  ++    S  + +IT+S GIA           ++I  AD+ALY AK
Sbjct: 493 AIAVARAIRTSVEILKLPHPQSSINPYITLSFGIASALPLADASPDSLIQSADRALYQAK 552

Query: 249 KSGRNRVV 256
             GRNR+ 
Sbjct: 553 AKGRNRIC 560


>gi|296135034|ref|YP_003642276.1| diguanylate cyclase/phosphodiesterase [Thiomonas intermedia K12]
 gi|295795156|gb|ADG29946.1| diguanylate cyclase/phosphodiesterase [Thiomonas intermedia K12]
          Length = 801

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 102/208 (49%), Gaps = 13/208 (6%)

Query: 69  LSLVIISITISLLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAFISSL--- 122
           L+++    T+ + +   S +++K    L  ++  + + +  D L+GL N   F+  L   
Sbjct: 167 LTVLAFGATLMMTVEGFSRALIKDNLRLTKAFKALRRFALRDELTGLANRRIFLDHLNEL 226

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                N+ L+I   D+D FK +ND  GH +GD+++  +  +L  V      + R GG+EF
Sbjct: 227 MQRRPNQTLTIGLMDLDRFKSVNDRLGHIIGDQLLVAVGQRLRGVLREGDLLARFGGDEF 286

Query: 181 AAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TII 237
                G S+EQ+ + +A  L   IE     I  G S+ I +S G+  +    P+   T++
Sbjct: 287 VVLLPGYSTEQQLSYIAKRLVNCIEA--PFIIQGNSLQIGLSLGLVVQQPDAPVDAQTLV 344

Query: 238 YRADQALYVAKKSGRNRVVCFSDIENNT 265
            RAD A+Y AKK+GR +   F     + 
Sbjct: 345 RRADMAMYAAKKNGRQQYRIFDQQMEDA 372


>gi|113970467|ref|YP_734260.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-4]
 gi|113885151|gb|ABI39203.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-4]
          Length = 752

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 90/185 (48%), Gaps = 11/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQ 141
           S + E   +   I   +  D L+GL N +A    +             S +  D+D FKQ
Sbjct: 299 SDISERKKAAQLIKYQANNDSLTGLANRNALFRQIQELISADSLTPGFSFMLMDLDNFKQ 358

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL- 199
           +ND +GH  GD ++  + +++           RLGG+EFA    G  +++E + LA  + 
Sbjct: 359 VNDTYGHDKGDALLVQVVEEIKTCLNDQAVFSRLGGDEFALLLPGIVTQRELSQLAEKIN 418

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           R++    ++++  G  ++ ++S GIA        +  ++  ADQA+Y++K +GRNR   F
Sbjct: 419 RQVYRRYELSLDKG--VYSSVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFF 476

Query: 259 SDIEN 263
           ++   
Sbjct: 477 TEQMQ 481


>gi|127511747|ref|YP_001092944.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella loihica PV-4]
 gi|126637042|gb|ABO22685.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella loihica PV-4]
          Length = 837

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 104/234 (44%), Gaps = 18/234 (7%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG------YISG--SILKELF 94
            F   ++   +    ++G  +   ++ ++    +TIS + G      Y     + +    
Sbjct: 344 AFFERLWRSLLTNGKWHGEIWNRRKSGAIYPEQLTISSMYGDDHQVRYFVAVFADISAQK 403

Query: 95  ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
            S   +++L   D L+ L N           +        +L+++F D+D FK IND++G
Sbjct: 404 QSEKELARLVYHDPLTKLPNRMMLSANLEQELRHAAREETELALIFIDVDLFKHINDSYG 463

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206
           H  GD ++  ++ +L    G    + RLG +EF A      S+   +++ + LR+   ++
Sbjct: 464 HVTGDAILVEVARRLGQKLGEEATLARLGSDEFIAVLPHVESDDSVSLMVSRLREAF-DA 522

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              +    S+ +T S G+A      E   T++  AD A++ AK +GRN    ++
Sbjct: 523 PFLLDDEGSVRLTASMGVAIYPGDGESGDTLLRNADTAMHRAKANGRNNYAFYT 576


>gi|315123462|ref|YP_004065468.1| sensory box protein [Pseudoalteromonas sp. SM9913]
 gi|315017222|gb|ADT70559.1| sensory box protein [Pseudoalteromonas sp. SM9913]
          Length = 990

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 52/215 (24%), Positives = 99/215 (46%), Gaps = 13/215 (6%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G  Y  + N+S++     ++  LG  +   + +      ++S+++  D L+ L N     
Sbjct: 505 GELYAELLNISVLKDDNNVTFYLGIFT--DITQAKRQQEQLSRIAHYDLLTNLPNRVLLA 562

Query: 120 SSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L         +N  L++VF D+D FK +ND+ GH +GDK++  LS +L         +
Sbjct: 563 DRLSQTMLQCRRHNNSLAVVFLDLDGFKHVNDSHGHDIGDKLLIALSIRLKDALREGDSL 622

Query: 173 GRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
            R+GG+EF A      S  +   +   L  +   ++    +   ++++ S G+       
Sbjct: 623 ARIGGDEFVAVLTNLGSVADCVPVLERL--LAAAAKPVTVNDIVLNVSASIGVTIYPEDN 680

Query: 232 -PISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                ++  ADQA+Y+AK+ G+NR   F   + +T
Sbjct: 681 LDAKQLMRHADQAMYIAKQMGKNRYHLFDTSQGDT 715


>gi|268679838|ref|YP_003304269.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617869|gb|ACZ12234.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 381

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 73/270 (27%), Positives = 118/270 (43%), Gaps = 33/270 (12%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITI 78
           L  F+    +I+     + F+ + +F+  I   +I +   + L Y     +   II +TI
Sbjct: 113 LWLFTYPLGIIFLLGSRTGFMFSTLFLGIILSLFIFVEHIHTL-YSFSFQMRFSIIYLTI 171

Query: 79  SLLLGYI--------------SGSILKE----------LFISYNRISQLSRIDCLSGLLN 114
           S +  +I                ++LKE            +    +  L++ D L+ L N
Sbjct: 172 SFIASWIEYHRSRYEQESFQTQEALLKEQALLKKEIQRRIVLEEELQHLAQTDILTSLFN 231

Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
              F++           Y   L     DID+FK+IND  GHPVGD V++ L+  L     
Sbjct: 232 RRHFLTLAQQEIIKALRYEHSLCFAVLDIDFFKRINDTLGHPVGDIVVSTLARHLKHSIR 291

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
               V R+GGEEFA   L  +E++A      LR+ I    I      ++ +T+S G+A  
Sbjct: 292 QSDIVARIGGEEFAFLLLHVNEEQARAKMERLRQEISECIIEYGVDKTLSVTVSIGLAML 351

Query: 228 CHK-EPISTIIYRADQALYVAKKSGRNRVV 256
               + +  +  +ADQ LY AKK+GRN + 
Sbjct: 352 QPPIQTLDELYMKADQKLYEAKKAGRNCIR 381


>gi|241204911|ref|YP_002976007.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858801|gb|ACS56468.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 417

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 62/190 (32%), Positives = 91/190 (47%), Gaps = 12/190 (6%)

Query: 88  SILKELF-ISYNRISQL--SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           SIL+EL   + +RI  +  + ID L+  +   AF             +   LS + FDID
Sbjct: 153 SILEELAGAAMDRIELMQSAAIDSLTEAMTRRAFKQEADQLISLALRHKHDLSCIVFDID 212

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK++ND  GH  GD+V+  ++             GRLGGEEFA        + AA +A 
Sbjct: 213 HFKKVNDTHGHAAGDEVLKAVASTCKTTLRAGDLFGRLGGEEFAVILPHVDREGAAAVAE 272

Query: 198 DLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            LR  + +  I    G  + +T S G  A     + I T++ +AD A+Y AK  GRNR V
Sbjct: 273 KLRAAVASHIIRGDHGA-LTVTASFGTSALSIVSKEIETLLAQADGAMYQAKHGGRNRCV 331

Query: 257 CFSDIENNTC 266
            +S I  +  
Sbjct: 332 SWSSIHADHA 341


>gi|92114679|ref|YP_574607.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Chromohalobacter salexigens DSM 3043]
 gi|91797769|gb|ABE59908.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Chromohalobacter salexigens DSM 3043]
          Length = 836

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 95/203 (46%), Gaps = 11/203 (5%)

Query: 65  LVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           L+EN ++  I      +  YI+    + +  +   R+ + +  D L+GL N   F  +L 
Sbjct: 348 LIENATISAIHDADGTITHYIAVFRDITQKHLKQARLERRAIYDPLTGLFNREHFGDALE 407

Query: 124 SYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
           +    L       +++F D+D FK +ND +GH  GD  +  ++ +L     +   V RLG
Sbjct: 408 NLLSGLSYTGIGIAVLFIDLDDFKPVNDTYGHAAGDDALVTIAQRLKQQTRSTDLVARLG 467

Query: 177 GEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIS 234
           G+EF  A  G  S ++A  +A  +   +  S I +    +I ++ S GIA          
Sbjct: 468 GDEFVIALAGMRSAEKAEKVAFKILDDL-ISPIALRGEHAITLSASVGIAYTDDSRFAPD 526

Query: 235 TIIYRADQALYVAKKSGRNRVVC 257
            +I  AD A+Y AK  G+N+V  
Sbjct: 527 ALIAAADSAMYEAKSRGKNQVAI 549


>gi|71281361|ref|YP_267569.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71147101|gb|AAZ27574.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 333

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 7/174 (4%)

Query: 91  KELFISYNRI---SQLSRIDCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQINDN 145
           +E+    +++    Q + +D L+GLLN       L   S+ +  S +  DID+FK++ND 
Sbjct: 159 QEINQLKDKLASSRQEALVDSLTGLLNRRGCDEKLQNLSHADTHSSLAIDIDHFKKVNDT 218

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH +GDKVI  ++  +    G      R GGEEF      +   EA  +A  +R  I  
Sbjct: 219 FGHFIGDKVIQRIAKTIQSHIGEQDLAVRFGGEEFVVVMTNTPLAEAKNIAEKIRIGISK 278

Query: 206 SQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            ++      +    I++S GIA+  +    +T+  +AD ALY AK SGRN  +C
Sbjct: 279 MRLKQRDTNTFLPPISVSIGIAQNDNISEWTTLFEQADTALYQAKNSGRNCCIC 332


>gi|218289278|ref|ZP_03493513.1| diguanylate cyclase [Alicyclobacillus acidocaldarius LAA1]
 gi|218240626|gb|EED07806.1| diguanylate cyclase [Alicyclobacillus acidocaldarius LAA1]
          Length = 376

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 109/257 (42%), Gaps = 25/257 (9%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYIL-----VENLSLVIISIT--- 77
           T +++  +        V F A + L  + ++     E IL     +   SLV++  T   
Sbjct: 117 TSILHLRVEKVWLAGAVAFAAELALTLMQMSGGASAEAILQSLGHLALWSLVLLWTTSAC 176

Query: 78  -ISLLLGYISGSILKELFISYNRI-------SQLSRIDCLSGLLNHSAFISSL------- 122
            I L  G      L+    +   +        + ++ D L+GL N  +F   L       
Sbjct: 177 HIVLRFGLRIWDELRVQARAQTELWVRQILSEKEAKTDALTGLYNRKSFDEYLDFALQIS 236

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
              N  L +   DID FKQIND +GH VGD+++   +  +        F+ R GGEEFA 
Sbjct: 237 EGTNTPLHLAVIDIDNFKQINDRYGHLVGDEILRRTAQAIQQHLAAGDFLARYGGEEFAV 296

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
                S ++A      +R+ I N       G     T+S G++     E    +  RADQ
Sbjct: 297 IIPEVSHEQAVQNMEKIREYIANVHHLELDGN--RATVSIGLSTHRPGETRDELFERADQ 354

Query: 243 ALYVAKKSGRNRVVCFS 259
            LY AK++G+N++V + 
Sbjct: 355 CLYRAKQTGKNKIVAWE 371


>gi|158333247|ref|YP_001514419.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acaryochloris marina MBIC11017]
 gi|158303488|gb|ABW25105.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Acaryochloris marina MBIC11017]
          Length = 754

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 12/185 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNE----KLSIVFFDIDYFK 140
            + E   +  ++   +  D L+GL N +  +      L   +     + +++F D+D FK
Sbjct: 282 DITEQKRAQAQLIHDAFHDELTGLPNRNLMMERISQSLKRQHRTSDYQFALLFIDLDRFK 341

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
            IND+ GH VGD+++  ++  L     T   V RLGG+EF     G    ++A  +A  +
Sbjct: 342 IINDSLGHIVGDQLLVAIAHLLENCVRTSDTVARLGGDEFTILLDGIQGIEDAIHVAERI 401

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + +  S   +    S+    S GIA      +  + ++  AD A+Y AK  G+   V F
Sbjct: 402 LETL-KSPFQVGE-HSVFTGSSIGIAYNSVQYDDPTLLLRDADIAMYRAKSLGKGCFVVF 459

Query: 259 SDIEN 263
           S   +
Sbjct: 460 SPEMH 464


>gi|78777534|ref|YP_393849.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78498074|gb|ABB44614.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM
           1251]
          Length = 439

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 79/176 (44%), Gaps = 11/176 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           +EL  +   + +L   D L+G+ N       +         Y    S++  DID FK +N
Sbjct: 267 EELSEAKKELERLYITDQLTGVYNRVKIDEIIDIELKKQKRYGYVCSVIMIDIDLFKLVN 326

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD  +   S  L         VGR GGEEF   +  + +  A  LAN LR  I
Sbjct: 327 DTYGHLAGDLTLKEFSALLKSNVRDTDNVGRWGGEEFIIVSPQTDQDGALSLANHLRSKI 386

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           E              T S G+A     + I ++I  AD+ALY AK SGRN+VV  +
Sbjct: 387 EEFTFTTVGKK----TASFGVASCSEDDDIQSLIDNADKALYRAKNSGRNKVVTHN 438


>gi|307717735|ref|YP_003873267.1| hypothetical protein STHERM_c00180 [Spirochaeta thermophila DSM
           6192]
 gi|306531460|gb|ADN00994.1| hypothetical protein STHERM_c00180 [Spirochaeta thermophila DSM
           6192]
 gi|315187351|gb|EFU21107.1| diguanylate cyclase [Spirochaeta thermophila DSM 6578]
          Length = 346

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 10/167 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +++  D L+ L   + F S L             LS++  D+D+FK++ND +GH  GD
Sbjct: 181 LYEMAVTDFLTHLKLRNYFDSMLADLMLVVEREQTPLSLIMADLDHFKRLNDTYGHLAGD 240

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           KV+  ++  +           R GGEEFA     +  + A  +A+ +R  +E+ +I    
Sbjct: 241 KVLQEIARVIHFHTRKNDIAARYGGEEFAVLLPHTPLEAAVGIADRIRIAVEHLEIPY-G 299

Query: 213 GPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
           G  +HITIS G+A+            I RAD+ALY+AK+ GRNRV  
Sbjct: 300 GAVMHITISLGVAQYDPRRDATPEDFIERADKALYMAKEKGRNRVCV 346


>gi|209885875|ref|YP_002289732.1| ggdef domain protein [Oligotropha carboxidovorans OM5]
 gi|209874071|gb|ACI93867.1| ggdef domain protein [Oligotropha carboxidovorans OM5]
          Length = 541

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 99/225 (44%), Gaps = 7/225 (3%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102
           + I     +       +     + + LS     +  +  L     S+ ++  I  +R++ 
Sbjct: 277 VLIGAAVTWAASSGGGFMAHLSIADRLSNAGFFVAAACALSLFLFSLFEDRRILIDRLTH 336

Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L  L N   FI             +  L+++  D D FK +ND +GH  GD  +
Sbjct: 337 LASWDSLVELPNRRHFIEVAEQEIAIARRDSRNLALLILDADNFKTLNDQWGHAAGDAAL 396

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++     V   P   GR+GGEEFA      S  EA+  A  LR  I  + + I+   +
Sbjct: 397 RMIALACASVSPRPDCAGRIGGEEFAMLLPAMSVAEASDFAEMLRAQIAATPVQIAPDTT 456

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           I++T+S G++       +  ++  ADQALY AK  GRN+VV   D
Sbjct: 457 IYVTVSIGVSAFGAHADLCAMMRAADQALYTAKGRGRNKVVQADD 501


>gi|89092334|ref|ZP_01165288.1| multisensor diguanylate cyclase/phophodiesterase [Oceanospirillum
           sp. MED92]
 gi|89083422|gb|EAR62640.1| multisensor diguanylate cyclase/phophodiesterase [Oceanospirillum
           sp. MED92]
          Length = 852

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 11/186 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           +S   + +      +I + +  D L+GL N + F  SL           +K ++++ D+D
Sbjct: 401 VSVVDITQRKQDEQKIWRQANFDQLTGLANRNYFTDSLSHTIDLAERQGDKFALLYIDLD 460

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LA 196
            FKQ+ND  GH +GDK++   + +L         + RL G+EFA    G+   E    L 
Sbjct: 461 RFKQVNDTLGHSMGDKLLNDAAKRLKENSRKSDIIARLAGDEFAILLSGTGRPEVIEPLV 520

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             L   +        SG    I+ S GIA        ++ ++ +AD A+Y AK+ GRN  
Sbjct: 521 TKLLNSLAA--PYDLSGNETTISASIGIALFPEDGCEVADLLRKADSAMYKAKEDGRNNF 578

Query: 256 VCFSDI 261
             F++ 
Sbjct: 579 HFFTEE 584


>gi|330890801|gb|EGH23462.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 703

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 94/214 (43%), Gaps = 13/214 (6%)

Query: 64  ILVENLSLVIISITISLLLGYI---SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +LV +LS++ I++   +L  ++   +  +   L  +   ++ L+  D L+GL N      
Sbjct: 220 VLVASLSILGIALFSCILDSHLETRTAVLANSLTEANQELTHLALHDNLTGLPNRVLLTD 279

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            +    +K        +++F D+D FK +ND FGH  GD ++  ++ +L         + 
Sbjct: 280 RIEQAMKKVCESGGCFALMFMDLDGFKPVNDAFGHHTGDLLLRQVALRLRNNLHRHDTLA 339

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           R+GG EF         Q+A  +A   R++ E           + I++S GI     +   
Sbjct: 340 RIGGGEFVLLVELHDPQDALAVAT--RQVNEIGNPFTIGEHQLQISLSIGICMYPGNGNT 397

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              ++  AD A+Y  K +G+N    F    N+  
Sbjct: 398 QHELLINADAAMYHTKAAGKNGYSFFDASMNSNA 431


>gi|228942821|ref|ZP_04105341.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228976164|ref|ZP_04136655.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228783554|gb|EEM31642.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228816851|gb|EEM62956.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 828

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 51/200 (25%), Positives = 96/200 (48%), Gaps = 10/200 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125
           +++V I I       Y+    +  +    + I+ L+  D ++ + N + F   L  +   
Sbjct: 366 VTIVPIMIEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRTFFQQELDRFIKR 425

Query: 126 ----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                +K  +++ D++ FK IND  GH VGD+V+  ++ +        + + R+GG+EFA
Sbjct: 426 AQKSQDKFGLLYIDLNRFKTINDTLGHSVGDRVLKEVAKRFRTCLSPTIPLARIGGDEFA 485

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRA 240
                 +EQ+   L   L +I E  +  + +  S ++T+S GIA         +T++  A
Sbjct: 486 IIVHNQTEQQLFDLCETLFRITE--EPFVVNQHSFYLTLSIGIAVYPFGGINTTTLLQHA 543

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D A+Y AK+ G N V  + +
Sbjct: 544 DIAMYSAKEKGNNAVCMYDE 563


>gi|16127324|ref|NP_421888.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15]
 gi|221236127|ref|YP_002518564.1| sensory box/GGDEF family protein [Caulobacter crescentus NA1000]
 gi|13424748|gb|AAK25056.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15]
 gi|220965300|gb|ACL96656.1| sensory box/GGDEF family protein [Caulobacter crescentus NA1000]
          Length = 748

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 56/214 (26%), Positives = 93/214 (43%), Gaps = 13/214 (6%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G+  +  + ++L+        LLG      + E   +  +I++L+  D L+ L N   F 
Sbjct: 237 GMAILRTKKIALLNAEGRAEYLLG--VSEDIAERKRAEAQIARLAHYDPLTDLPNRVLFQ 294

Query: 120 SSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
            SLG          + L++ F D+D FK +ND  GHP+GD ++   +++L         V
Sbjct: 295 KSLGEALARRSRKGDALAVHFVDLDRFKTVNDTLGHPLGDALLKIAAERLRGCVREGDTV 354

Query: 173 GRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
            RLGG+EFA    G  +   A  LA  + + +         G  + I  S G++      
Sbjct: 355 ARLGGDEFAIVQTGLDDSNGATRLAARIVEAMAA--PFDLQGHHVVIGASVGVSLAPTDG 412

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +    ++ +AD ALY AK  GR     F    + 
Sbjct: 413 DDADELLKKADMALYRAKADGRGAYHFFERAMDE 446


>gi|326387643|ref|ZP_08209249.1| hypothetical protein Y88_0556 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326207689|gb|EGD58500.1| hypothetical protein Y88_0556 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 468

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 123/262 (46%), Gaps = 31/262 (11%)

Query: 23  SPHTFMIYFSIFFSIFIAT---VIFIANIFLFYI-GLTPF-YGLEYILVENLSLVIISIT 77
           +P TF ++ +++    +A    +I +A    F I G+ P   GL  +     + ++    
Sbjct: 207 APLTFALFCAVWADALVALTMPIIVVAVATAFTIRGIGPLSTGLGDMADRVHAGLLYGGM 266

Query: 78  ISL-LLGYISGSILKELFISY-------------------NRISQLSRIDCLSGLLNHSA 117
           +SL  L  ++    +   ++                    + + + +  D L+GL N   
Sbjct: 267 VSLGTLPIVTEQARRRRELAQLSLSEAHYRAMSERADDLIDELRRAAFTDPLTGLANRRL 326

Query: 118 FISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           F  +L       E+  +   DID+FKQ+ND +GH VGD V+   +D       +  F+ R
Sbjct: 327 FFETLRERATGTERACLAMVDIDHFKQVNDRYGHAVGDAVLCHFADLARSTLRSRDFIAR 386

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
           +GGEEFA     ++ ++A  +   L   +  S ++ ++GP + IT+S+G+A        S
Sbjct: 387 IGGEEFAIIIQDTTIEQACQVCQRLLDRLAASPVDTAAGP-VSITLSSGVAAVGPDCDAS 445

Query: 235 TIIYRADQALYVAKKSGRNRVV 256
             +  AD+ALY AK+ GR+R+V
Sbjct: 446 --LAAADEALYQAKRDGRSRLV 465


>gi|262394362|ref|YP_003286216.1| GGDEF family protein [Vibrio sp. Ex25]
 gi|262337956|gb|ACY51751.1| GGDEF family protein [Vibrio sp. Ex25]
          Length = 489

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 66/255 (25%), Positives = 109/255 (42%), Gaps = 34/255 (13%)

Query: 30  YFSIFF-SIFIATVIFIANIFLFYIGLTPFYGL---------------EYILVENLSLVI 73
            +S+FF SI I  +  +   F   +   P + L               +  LV++     
Sbjct: 247 MWSVFFKSIPIGLLTLLLIWFFSLLISRPLWQLAGAVRGVEEHSSSIDDLKLVKSWYFEA 306

Query: 74  ISITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEK 128
             + +S L   G +S +I        +++   +  D ++GLLN       LG     N  
Sbjct: 307 SHLKLSFLKAFGIVSKTI--------DKLQLDTLTDAMTGLLNRRGLDKVLGLFKQENTA 358

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            SI+  DID+FK +NDN+GH VGD ++   +  +         + R GGEEF      + 
Sbjct: 359 FSILALDIDHFKSVNDNYGHDVGDNLLKEFAQLMKEQARANDHLCRSGGEEFMMFLEATD 418

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVA 247
              A  +A  +R  +E     +       +T+S G++     + PI  ++  AD ALY A
Sbjct: 419 VHHAVDVAERIRHNVEKHDFLVVG----KVTVSLGVSHWKGNDMPIEAVMKDADNALYKA 474

Query: 248 KKSGRNRVVCFSDIE 262
           K++GRNR     D +
Sbjct: 475 KRNGRNRTELGEDAQ 489


>gi|296120366|ref|YP_003628144.1| diguanylate cyclase [Planctomyces limnophilus DSM 3776]
 gi|296012706|gb|ADG65945.1| diguanylate cyclase [Planctomyces limnophilus DSM 3776]
          Length = 577

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 15/176 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPV 150
           ++ + +R D L+ L N   F   L    + +        S++  D+D FK IND +GH  
Sbjct: 393 QMERQARQDGLTDLANRRTFDLQLAREIDSVQQGLGLECSLLLCDLDRFKSINDQYGHQA 452

Query: 151 GDKVIAFLSDQLVVVF-----GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           GD V+   +  L         G    + R GGEE A    G     A  +A  +R  I++
Sbjct: 453 GDLVLRETAQILREQMGKIRSGDRALLARYGGEEMAILLPGVGITGALRIAEGIRAAIDS 512

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
               + S   + +TIS G+A    H      +I  AD ALY AK +GRNRV C  +
Sbjct: 513 HPFAVES-ALLTVTISVGVATCPLHASSPEALISAADAALYEAKSAGRNRVCCAQE 567


>gi|229106157|ref|ZP_04236711.1| Sensory box/GGDEF [Bacillus cereus Rock3-28]
 gi|228677275|gb|EEL31598.1| Sensory box/GGDEF [Bacillus cereus Rock3-28]
          Length = 827

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 93/200 (46%), Gaps = 10/200 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121
           +++V I I       Y+    +  +      I+ L+  D ++ + N   F       I  
Sbjct: 366 VTIVPIMIEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIER 425

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
           +    +K  +++ D++ FK IND  GH +GDKV+  ++ +        + + R+GG+EFA
Sbjct: 426 VQKTQDKFGLLYIDLNRFKTINDTLGHAIGDKVLKEVAKRFRTCLSPTIPLARIGGDEFA 485

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRA 240
                 +EQ+   L   L +I E  +  + +  S ++++S GIA          T++  A
Sbjct: 486 IIVHNKTEQQLLDLCETLFRITE--KPFVVNQHSFYLSLSIGIALYPFGGTNAKTLLQHA 543

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D A+Y AK+ G N V  + +
Sbjct: 544 DIAMYSAKEKGNNTVCMYDE 563


>gi|254492442|ref|ZP_05105614.1| cyclic diguanylate phosphodiesterase domain protein [Methylophaga
           thiooxidans DMS010]
 gi|224462334|gb|EEF78611.1| cyclic diguanylate phosphodiesterase domain protein [Methylophaga
           thiooxydans DMS010]
          Length = 945

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 10/188 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
           G  + +   S  ++  ++  D L+ L N   F       ++    Y  +  ++F D+D F
Sbjct: 503 GLDVTDKKRSEEQMLWMANHDALTELYNRRKFNSDFKKLLNQAQRYKREGMLLFLDLDQF 562

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND+ GH VGD+++  ++  L+ +  +   V RLGG+EFA     +    A  L   +
Sbjct: 563 KDINDSCGHNVGDQLLQRVAQSLLAISRSTDIVARLGGDEFAIILPETDLHGAITLCEKI 622

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              ++N   +        I+ S GI +   +   +  ++  AD A+Y AK  G+N    F
Sbjct: 623 TDSLKNIDFSHEQ-ARYTISCSIGITKFPLNNLTVDELVSNADMAMYQAKSKGKNTWHLF 681

Query: 259 S-DIENNT 265
           + D    T
Sbjct: 682 TFDDMART 689


>gi|242278405|ref|YP_002990534.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
 gi|242121299|gb|ACS78995.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
          Length = 394

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 91/184 (49%), Gaps = 11/184 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVF 133
           +LG     +  +L  +++ + +++  D L+GL N   F S +         YN  L I  
Sbjct: 208 MLGRTLDDMRTKLDKNFSLMREMAVTDELTGLPNRRGFHSEVEKLLWLSDRYNHPLIIAL 267

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           FDIDYFK IND+FGH VGD+V+   ++ +           R+GGEEF      +S  +  
Sbjct: 268 FDIDYFKTINDSFGHAVGDEVLKNFAEFISGRIRKTDLFARVGGEEFVLVMPETSRDDGH 327

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            L + LR  +   +    +     +T+S G  +    + +  ++  AD+ALY AK+ GR+
Sbjct: 328 KLLDLLRHEVSVHEFPHGN----TVTVSVGYTDNSGSDTLEELMDIADKALYKAKQDGRD 383

Query: 254 RVVC 257
           R++ 
Sbjct: 384 RIIF 387


>gi|160898913|ref|YP_001564495.1| diguanylate cyclase [Delftia acidovorans SPH-1]
 gi|160364497|gb|ABX36110.1| diguanylate cyclase [Delftia acidovorans SPH-1]
          Length = 393

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 111/247 (44%), Gaps = 10/247 (4%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITI 78
           L    P  ++     +  +  A       + +  +G T    L  I      LV +  T+
Sbjct: 143 LRRRPPQDWLERMLYWSYVVFAGYTAARPLLVLALGST---DLNEIARSTYWLVTLVSTL 199

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVF 133
           S  L +    +   +   +  + +    D L+ LLN  AF  +        +   +S++ 
Sbjct: 200 SFALLFTLMLLACTVRDVFTALREERNHDSLTNLLNRRAFQEAAELRLADPHMAPISVLI 259

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK+IND++GH  GD+V+  ++  L         V R GGEEF    + ++ QEA 
Sbjct: 260 GDIDHFKRINDSWGHDCGDRVLQAVAQTLQQHVRNDDLVCRFGGEEFVLLLMRTTPQEAE 319

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +A  +R  +      +++G    +TIS GIA       ++  + RAD  LY AK++GR+
Sbjct: 320 RVAQRIRAQLSADGYVLAAGQ--RVTISFGIAPVAANTALTDALTRADGLLYAAKQAGRD 377

Query: 254 RVVCFSD 260
           RV   +D
Sbjct: 378 RVHVATD 384


>gi|74316103|ref|YP_313843.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055598|gb|AAZ96038.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) and Response Regulator
           Receiver modulation [Thiobacillus denitrificans ATCC
           25259]
          Length = 738

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 11/186 (5%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFD 135
            Y     + E   +   +   +  D L+GL N + F   L          ++ L+++  D
Sbjct: 284 SYGVAKDVTERKQAEETVHYQAYHDLLTGLPNRALFRDHLALMLAQAKRSHKTLAVLSLD 343

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAI 194
           +D+FK IND+ GH +GD+++  +  +L         + RLGG+EFA       S  +   
Sbjct: 344 LDHFKVINDSLGHTIGDELLLAVGARLRQCLREGDTLARLGGDEFAVLLPTLLSRGDVEQ 403

Query: 195 LANDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +   + +++  S+     G  I+I++S G        E I ++I +A+ A+Y AK  GR+
Sbjct: 404 ICRKIIQVL--SRPVYVKGHEIYISVSIGACVAPDDGEMIDSLIRQAEIAMYQAKAQGRS 461

Query: 254 RVVCFS 259
           R+  + 
Sbjct: 462 RLQFWE 467


>gi|89093894|ref|ZP_01166839.1| sensory box protein [Oceanospirillum sp. MED92]
 gi|89081780|gb|EAR61007.1| sensory box protein [Oceanospirillum sp. MED92]
          Length = 342

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 11/177 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
            + ++L      +  L+  D L+G+ N   F       I     Y++ + ++  DID FK
Sbjct: 161 QLNQQLARKVEEVEMLASRDALTGIYNRRMFESFLDIEIKRAKRYSQPMCVILADIDLFK 220

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GH  GDKV+  ++  L        ++ R GGEEFA     ++ + A   A  LR
Sbjct: 221 HVNDRYGHSSGDKVLVEVALTLQQHLRESDYLARWGGEEFAIILPNTATKVAMETAERLR 280

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +E+    + +   I +T S G+ +   K+  ++I  R DQALY+AK   RN V  
Sbjct: 281 HEVES----LVTTEGISVTCSFGVTQFHQKDCGTSIFSRMDQALYMAKDQNRNTVRL 333


>gi|320335783|ref|YP_004172494.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
 gi|319757072|gb|ADV68829.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
          Length = 813

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 9/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEK-LSIVFFDIDYFKQINDNFG 147
           L  +   ++  +  D L+GL N + F      +L    E  ++++F D+D FK IND  G
Sbjct: 373 LQEAQQHLAHRATHDALTGLANRAHFHAEVERALAERGESAIAVLFIDLDRFKHINDTLG 432

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206
           H VGD+++  ++ +L         V R+GG+EF         E++A  +A  L   +  +
Sbjct: 433 HDVGDELLREVARRLRANVRAADLVARMGGDEFTLLLRDLHDERDAERVARKLLTAL--T 490

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                 G  + +T S G+A        ++T+   AD A+Y AK+SG+N V  F+
Sbjct: 491 GAFELRGQRLFVTASIGVALAPRDGLDVTTLQKHADIAMYRAKQSGKNGVRTFA 544


>gi|197337767|ref|YP_002157748.1| sensory box/ggdef family protein [Vibrio fischeri MJ11]
 gi|197315019|gb|ACH64468.1| sensory box/ggdef family protein [Vibrio fischeri MJ11]
          Length = 482

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 99/200 (49%), Gaps = 11/200 (5%)

Query: 68  NLSLVIISITISLLLGYISGSI--LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS- 124
           +LSL+ +    ++++G +  ++  LK+     ++ S+L+  D L+G+ N  AF       
Sbjct: 282 SLSLMAVIGCFAVIIGLLLFNLNYLKKTRAQKDKYSELAYNDYLTGVNNRRAFEKQANKV 341

Query: 125 ------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                   +  S++  DID FK+ ND FGH VGD++I   S+           V RLGG+
Sbjct: 342 FKTYQNDKQVFSLIMCDIDNFKEYNDKFGHDVGDQMITAFSEACSAQINQDDIVARLGGD 401

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTII 237
           EF        +++A ++A  L+ +I +  + +  G  + +T S G+A        +  ++
Sbjct: 402 EFIVLLHHKDKEQAVMVAESLQNVIRDLSV-LVDGQELSMTCSMGVATVSELTTSLHELL 460

Query: 238 YRADQALYVAKKSGRNRVVC 257
             AD  LY AK++GRN V  
Sbjct: 461 NIADTQLYKAKEAGRNCVRF 480


>gi|71278464|ref|YP_271624.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71144204|gb|AAZ24677.1| sensory box/GGDEF/EAL domain protein [Colwellia psychrerythraea 34H]
          Length = 1534

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 99/211 (46%), Gaps = 12/211 (5%)

Query: 62   EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
            EY ++ N+++   S+T +L   ++  + +     + + +  L+  D L+GL N +  +  
Sbjct: 1060 EYHVIINVTVGFSSVTNALHYLFVL-TDISAQKSAESELRLLANYDHLTGLPNRTLLLER 1118

Query: 122  L-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
            +          +  +++ F D+D FKQ+ND+ GH  GD ++  ++++L         V R
Sbjct: 1119 IKHAIDFSNRRDTSIAVFFIDLDRFKQVNDSLGHDFGDLLLREITNRLQSTLRIDDTVAR 1178

Query: 175  LGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-P 232
            +GG+EF       ++E +   +A  +   I  S      G  + +  S GIA   +    
Sbjct: 1179 IGGDEFVVLLESFANENQLGRIAEKVIDTIGQS--VDLDGNLVSVGASVGIALYPNDGIN 1236

Query: 233  ISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
               ++  AD A+Y AK++G++    ++   N
Sbjct: 1237 SDELLRHADVAMYHAKQAGKSNFKFYTAQMN 1267


>gi|150389941|ref|YP_001319990.1| diguanylate cyclase with PAS/PAC sensor [Alkaliphilus
           metalliredigens QYMF]
 gi|149949803|gb|ABR48331.1| diguanylate cyclase with PAS/PAC sensor [Alkaliphilus
           metalliredigens QYMF]
          Length = 330

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 13/180 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------------NEKLSIVFFD 135
           S+ ++L  +  ++  LS ID LSGL NH  F   L               +   S++ FD
Sbjct: 151 SLNEKLEEANRQLRILSAIDSLSGLYNHRHFFEELNKAFELYTRQKEEGSSHGFSVILFD 210

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D FK IND  GH +GD VI  + + +     +     R GG+EFA     +S ++A  +
Sbjct: 211 VDNFKVINDKHGHLMGDVVIRQIGEIMKRNTRSTDSCFRYGGDEFAILLPNTSIEDARRI 270

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A  +R  I+N+ I  S    + IT+S G+A  C  + +  +  ++D+ LY +K +G+N V
Sbjct: 271 AEKMRVAIKNTAI-ASEHSELKITVSLGVASCCEAKSVKDLFRKSDEKLYCSKNTGKNMV 329


>gi|330823749|ref|YP_004387052.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Alicycliphilus denitrificans K601]
 gi|329309121|gb|AEB83536.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alicycliphilus denitrificans K601]
          Length = 816

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 10/184 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFK 140
             L     +  RI +L+  D L+GL N        +A I +   +    +I+F D+D FK
Sbjct: 367 RDLSVQHAAQKRIEELAYSDALTGLPNRLPLNKRVAAAIEASRGHGGGFAILFLDLDRFK 426

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND+ GHP GD+V+  ++++L         + RLGG+EF      +    A  +A  ++
Sbjct: 427 NVNDSLGHPFGDRVLKLVAERLQGCLRQSDMLCRLGGDEFVIYLHDADAAIAESVARRVQ 486

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  E  +  +       I  S G++      + +  +I  AD A+Y  K+ GR     + 
Sbjct: 487 E--EMLRPFMLDEMGFSIQCSIGMSLYPQDGDALDDLIKHADTAMYRVKERGRGSYGFYQ 544

Query: 260 DIEN 263
              N
Sbjct: 545 PQMN 548


>gi|325497407|gb|EGC95266.1| hypothetical protein ECD227_1504 [Escherichia fergusonii ECD227]
          Length = 366

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--------EKLSIVFFDIDYFK 140
            + E       + Q +  D L+GLLN   F   L  +N        +  S++  D D FK
Sbjct: 194 DITEQKRLEQELEQAAMRDALTGLLNRRQFF-LLTEHNSSQPGLMSQDYSLLLIDTDRFK 252

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GH  GD V+  L+  L         V R GGEEF      ++  +A  LA  +R
Sbjct: 253 SVNDLYGHQKGDDVLCVLARTLESCARKGDLVFRWGGEEFVLLLPRTTLDDALALAETIR 312

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +   +I ++  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 313 AQVA--KITLTGLP--RFTVSIGVARHEIDETIDALFKRVDDALYRAKNDGRNRV 363


>gi|297568620|ref|YP_003689964.1| response regulator receiver modulated diguanylate cyclase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924535|gb|ADH85345.1| response regulator receiver modulated diguanylate cyclase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 305

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 83/177 (46%), Gaps = 13/177 (7%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145
           L    + + + + +D L+G+ N   F                 LS++  DID+FK  NDN
Sbjct: 129 LKRKTDLLEKFALLDGLTGIPNRRHFDELFDKEMRRCLRNGLPLSVIMTDIDHFKGFNDN 188

Query: 146 FGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GDK +  ++  L   +      + R GGEEF A   G+    A  +A  LR  +E
Sbjct: 189 YGHGAGDKCLQKVAGALSGSLVRPGDSICRYGGEEFVALLPGTDAAGAREVAERLRVAVE 248

Query: 205 NSQINI-SSGPSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNRVV 256
              I    S  +  +T+S G A    +    T    ++ RADQALY AK++GRNRV 
Sbjct: 249 ALAITHEHSSAAPVVTVSLGAATLDPRRDSETDRQPLLSRADQALYAAKEAGRNRVA 305


>gi|218885660|ref|YP_002434981.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756614|gb|ACL07513.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 314

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 10/177 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQI 142
           L+EL  +   ++     D L+GL+N  AF+         +     +L +   D+D FK++
Sbjct: 110 LRELQKAVEELTHQRDHDPLTGLMNRRAFLRQVELELQRVHRGGAELCLAMLDLDDFKRV 169

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD V+  ++D L           R+GGEEF     G+S   A  L   L + 
Sbjct: 170 NDTWGHACGDLVLRRMADLLRDATRAYDVAARIGGEEFVLLLPGASPMRAQALLERLLQD 229

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
           + +         +  I+ SAGIA            ++ RAD+ALY AK SG+ RV  
Sbjct: 230 MRDETFECRD-ETFRISFSAGIAGCKGATVCRAEELLDRADKALYEAKASGKARVRV 285


>gi|296272932|ref|YP_003655563.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
 gi|296097106|gb|ADG93056.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
          Length = 610

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 64/232 (27%), Positives = 109/232 (46%), Gaps = 26/232 (11%)

Query: 58  FYGLEYILVENLSLVII---------------SITISLLLGYISGSILKELFISYNRISQ 102
           +Y L   +VENL L+I                S+ I+  L     ++  E+ +    +  
Sbjct: 377 YYCLNIDIVENLYLIIHFVVDTEKELDELKNKSLFINRFLKEARPAV--EVKLLMQALED 434

Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            +  D L+ L N       L           +K+ ++  D+D+FK +ND +GH +GDKV+
Sbjct: 435 SAFKDGLTQLYNRKFIDEHLKKLLPQIKRDKKKIGLLMLDMDHFKAVNDEYGHDIGDKVL 494

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGP 214
             LS  L         + R GGEEF    +G   +E A  +A+ +   +  ++IN+ +G 
Sbjct: 495 KSLSRILEENVRESDIIVRYGGEEFMVLLIGVDSEESAMNIAHKIGAKVRENEINVYAGT 554

Query: 215 SIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           +I  T+S G++       +  T++  +D ALY AK SGR++VV FS  +  +
Sbjct: 555 TIKKTVSIGLSMFPDDSSLFETVVKNSDIALYEAKSSGRDKVVRFSKEQKTS 606


>gi|238789059|ref|ZP_04632848.1| hypothetical protein yfred0001_41910 [Yersinia frederiksenii ATCC
           33641]
 gi|238722823|gb|EEQ14474.1| hypothetical protein yfred0001_41910 [Yersinia frederiksenii ATCC
           33641]
          Length = 467

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 84/186 (45%), Gaps = 11/186 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVF 133
           ++ Y S   + EL  S + +  LS+ D L+G+ N   F        +        +SI+ 
Sbjct: 276 VIWYGSFFDITELKQSESILKALSQTDVLTGVANRRHFDELYQRAWKKYRIEGGPISILM 335

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEA 192
            D D FK  ND +GH +GD  +  + + L     +    + R GGEEF      S+  +A
Sbjct: 336 IDFDNFKSFNDLYGHAMGDVCLQSIVETLSKSIRSGSDILARYGGEEFIVLLAPSTLTDA 395

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKK 249
             +A  +R  IE   I  +  P   +TIS G+A             +   AD+ALY AK 
Sbjct: 396 KAIAERMRHSIEELDIPHAMSPPGRVTISVGVASVSDPGEHLSAKDLSDAADKALYRAKI 455

Query: 250 SGRNRV 255
           SG+NRV
Sbjct: 456 SGKNRV 461


>gi|254514813|ref|ZP_05126874.1| ggdef domain protein [gamma proteobacterium NOR5-3]
 gi|219677056|gb|EED33421.1| ggdef domain protein [gamma proteobacterium NOR5-3]
          Length = 449

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 9/174 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQ 141
           ++ EL     R  ++   D L+ L         L   N+         S++  D+D FKQ
Sbjct: 275 LIDELAQKSQR--EMDSRDPLTSLYGRRFLDGILKRENQIAHSAGDAYSLLMIDVDDFKQ 332

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH +GD+V+  ++  L  V     F  R GG+E       S    A   A+ + +
Sbjct: 333 VNDTYGHAIGDRVLKQVAKVLTHVVRQTDFAFRYGGDELLVVLTSSDIDAARRKADAILQ 392

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I  + +N+  G  I I +S G+AE        T++ RAD+A+Y AK +G+N+V
Sbjct: 393 SIRAAPVNLDDGRVIPIKVSIGVAEYRGHPDYETMLKRADEAVYAAKTAGKNQV 446


>gi|186684624|ref|YP_001867820.1| diguanylate cyclase with PAS/PAC and Chase2 sensors [Nostoc
           punctiforme PCC 73102]
 gi|186467076|gb|ACC82877.1| diguanylate cyclase with PAS/PAC and Chase2 sensors [Nostoc
           punctiforme PCC 73102]
          Length = 734

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 11/175 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL +  + +  L+  D L+GL N   F   L          N  L ++F D+D FKQ+ND
Sbjct: 561 ELKLKEDHLRYLAYHDPLTGLSNRKFFAEQLYESLHWAQHNNLLLGLLFIDLDGFKQVND 620

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
             GH  GD+++  ++ +L         V RLGG+EF        + Q AA +A  +   I
Sbjct: 621 TLGHETGDRLLMTIAGRLSNSLRASDTVSRLGGDEFTIILRAIPNVQIAAKVAEKILSSI 680

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
             ++  +  G +I I+ S GI+   +  +    +I +AD A+Y AK  G+NR   
Sbjct: 681 --TKPIVLDGYAIRISASIGISVYPYNSQDSENLIKQADAAMYRAKHLGKNRYEF 733


>gi|134094840|ref|YP_001099915.1| hypothetical protein HEAR1631 [Herminiimonas arsenicoxydans]
 gi|133738743|emb|CAL61790.1| Conserved hypothetical protein, GGDEF domain [Herminiimonas
           arsenicoxydans]
          Length = 526

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 11/187 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDID 137
           + GS+++       +    +  D L+GL N   F                 LS+++ D+D
Sbjct: 342 VGGSLIRA-SEMLQKAQHQANHDVLTGLANRGLFDEIVNQQLALCERNQTSLSVLYIDLD 400

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND +GH  GD+++  ++ +L         V RLGG+EFA   +G+  ++AA  A 
Sbjct: 401 GFKAVNDAYGHETGDQLLCEVAARLKASSRHSDLVARLGGDEFAIVMVGTGLKDAAFFAE 460

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
            L + +  S + +    S HI+ S G+A           ++  AD+A+Y AK +GR + V
Sbjct: 461 KLVESL--SAVYVFGNLSAHISASIGVASYPDCALTSDALLQYADRAMYQAKGAGRRQAV 518

Query: 257 CFSDIEN 263
                E 
Sbjct: 519 MAPPAER 525


>gi|330873037|gb|EGH07186.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 492

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 93/208 (44%), Gaps = 15/208 (7%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           ++   +++    SL+ + I   + L ++    L+    + + ++ L+  D L+GL N   
Sbjct: 274 WHRNAWLIGTATSLLCLGI---VWLTWLLCRELRRRHRAEDELASLAATDGLTGLDNRRQ 330

Query: 118 FIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
                           + LS++  D+D+FK  N+  GH  GD+ +  ++  +      P 
Sbjct: 331 LDEAMETEWARAQRSGKWLSLLMIDVDHFKAFNERHGHQGGDEALRRIAQAVAGTIRRPG 390

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER-- 227
             + R GGEEF      +    A ++A  +R  +E+            IT+S G+A +  
Sbjct: 391 DQLARYGGEEFVVVLPETDMNGALVIAEKIRVAVESLPRYADDQQ--PITVSIGVAAQIV 448

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRV 255
              + ++     AD+ALY AK +GRNRV
Sbjct: 449 RQGDKLTAFFGIADKALYQAKHNGRNRV 476


>gi|325113002|ref|YP_004276948.1| putative signaling protein [Acidiphilium multivorum AIU301]
 gi|325052469|dbj|BAJ82806.1| putative signaling protein [Acidiphilium multivorum AIU301]
          Length = 620

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 10/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
            +    + E   +  RI  L+  D L+GL N       L            K ++   D+
Sbjct: 163 LVITQDVSERRRATERIRYLAEHDPLTGLANRRRLHEQLEGELEAGRRQGTKFAVHVIDV 222

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAIL 195
           D FK +ND FGH  GD+++  L+  L         + R+GG+EF     G    ++A  L
Sbjct: 223 DRFKTVNDLFGHAAGDRLLVDLATCLRQEARESDMIARIGGDEFVVLQTGIGDARDAGAL 282

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  L   + ++++  +   ++  T+S GIA           ++  AD ALY  K +GRN 
Sbjct: 283 AGRLVGAV-SARLAETGARALAATVSIGIALAPDDGTTAEALLSHADMALYQVKSTGRNG 341

Query: 255 VVCFS 259
              F+
Sbjct: 342 FAFFN 346


>gi|288920847|ref|ZP_06415144.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EUN1f]
 gi|288347744|gb|EFC82024.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EUN1f]
          Length = 809

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 10/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQI 142
            +L     S  ++   +  D L+GL N   F   L          +L+++F D+D FK +
Sbjct: 371 RLLDRAEQSRRQLRHQALHDPLTGLANRVLFGDRLEHAVARPSRGRLALLFCDLDDFKTV 430

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GHP GD+++   + +LV        V RLGG+EFA      +  +A  +   +R  
Sbjct: 431 NDTLGHPAGDELLRLAARRLVGCVPPSDTVARLGGDEFAVLLEDET-ADAEAVGRRVRAA 489

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCF 258
           +        +G    + +S G+A      PI   +++ +AD A+Y AK+ G++ +V +
Sbjct: 490 V--GAPCRLAGQPCAVQVSIGLAVAEPGSPISSESLLQQADLAMYAAKQRGKDSLVVY 545


>gi|260575447|ref|ZP_05843446.1| response regulator receiver modulated diguanylate cyclase
           [Rhodobacter sp. SW2]
 gi|259022367|gb|EEW25664.1| response regulator receiver modulated diguanylate cyclase
           [Rhodobacter sp. SW2]
          Length = 458

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 11/166 (6%)

Query: 102 QLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+ ID L+GL N    +              +  +++  D+D FK +ND++GH  GD V
Sbjct: 289 RLAVIDPLTGLYNRRYALPQLAAIAERAQEAGQGFAVMVIDLDRFKAVNDHWGHAAGDAV 348

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++++L         + R+GGEEF      S   +A   A  L  +++   I +  G 
Sbjct: 349 LVEVAERLTENLRKTDLLARIGGEEFLVVLPDSDLTDARATAERLCAVMQERPIQVQGG- 407

Query: 215 SIHITISAGIAERCHK---EPISTIIYRADQALYVAKKSGRNRVVC 257
           S+ +T+S G+A        EP++ I+ RAD+AL +AK +GRN+V  
Sbjct: 408 SLSVTVSIGLAISNPARQVEPVADIVDRADRALMLAKANGRNKVTI 453


>gi|157963083|ref|YP_001503117.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157848083|gb|ABV88582.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
          Length = 381

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 75/279 (26%), Positives = 120/279 (43%), Gaps = 37/279 (13%)

Query: 5   LKDFLSIWL--CHEKNLESFSPHTFMI----YFSIFFSIFIATV--IFIANIFLFYIGLT 56
              F  +WL    +  L+ + P  F +       ++  IFI  +   + AN+    I ++
Sbjct: 114 AAAFGWLWLNTEFKPLLDQYLPELFNVDVRTLAPLYLCIFIVAIRAAWQANLVNTSIFIS 173

Query: 57  -PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH 115
              +  ++I  E L L +    ++      S  IL  L  SY     L+  D L+GL + 
Sbjct: 174 LALWTAQFIRPETLPLAVSMTALA------SIYILTVLTDSY----FLAYRDELTGLASR 223

Query: 116 SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            A  + + S   K S+   DID+FK+ ND +GH VGD+V+  ++ ++  V        R 
Sbjct: 224 RALFNLVLSLGRKYSVAMLDIDHFKKFNDTYGHDVGDQVLKLVASKIAGV-RGGGRAFRY 282

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-----------------GPSIHI 218
           GGEEF                 ++R+ IE   I +                     ++ +
Sbjct: 283 GGEEFTIIFPRKDSSSTLDYLEEVRESIEEYDIVLRDEKRKSQSKATRGKTQGKAKTVSV 342

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           TIS G+AE  + E     + R+DQALY AKK GRN+V  
Sbjct: 343 TISIGVAEHQNGETFEQTMKRSDQALYRAKKKGRNQVCV 381


>gi|26991354|ref|NP_746779.1| GGDEF domain-containing protein [Pseudomonas putida KT2440]
 gi|24986417|gb|AAN70243.1|AE016663_11 GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 423

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 10/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L      ++  +  D L+GL N + F   L           + L+++F D D+FKQIND 
Sbjct: 237 LQSENQTLAHQASHDSLTGLPNRAFFEGRLSRSVRNAARQQDHLAVLFLDSDHFKQINDT 296

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKIIE 204
            GH VGD+V+  +++++         V RLGG+EFA       + ++A  +A  +   +E
Sbjct: 297 LGHAVGDEVLISVAERVRAQLREQDLVARLGGDEFAVLLTPLHTRKDAEHIAEKIVASME 356

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
              + + SG S+  ++S GIA         ++++  AD A+Y AK+  R     
Sbjct: 357 -LPVQLDSGRSVSTSLSVGIAYYPDDGADPASLLNAADAAMYQAKRERRGHWQV 409


>gi|152965644|ref|YP_001361428.1| diguanylate cyclase with PAS/PAC sensor [Kineococcus radiotolerans
           SRS30216]
 gi|151360161|gb|ABS03164.1| diguanylate cyclase with PAS/PAC sensor [Kineococcus radiotolerans
           SRS30216]
          Length = 612

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 77/178 (43%), Gaps = 12/178 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
            +        ++   +  D L+GL N +     L S   +        +++F D+D+FK 
Sbjct: 437 DVTARRREAEQLEHAALHDPLTGLPNRAKAEEQLRSALSRTVRRGGGCAVLFVDLDHFKD 496

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLR 200
           +ND  GH  GD ++  ++D+L  +        R+GG+EF        + +A   +A  + 
Sbjct: 497 VNDTLGHAAGDALLIDVADRLRGLLRAGDLAARIGGDEFVLVCEDVGDAQALSSIAERVC 556

Query: 201 KIIENSQINISSG-PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + I    I +  G  ++ ++ S G A          ++  AD+A+Y AK +GR     
Sbjct: 557 ERIS---IPVDLGVRTVTVSASIGAARTEGDLGPEELLRAADRAMYRAKAAGRACWRA 611


>gi|172058526|ref|YP_001814986.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15]
 gi|171991047|gb|ACB61969.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15]
          Length = 565

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 7/175 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNF 146
           E      R+   SR D ++ L N+ A                 S +  D+D+FKQIND +
Sbjct: 386 ERAQERERLLTDSRTDAMTKLPNYRALQEWGDRRIRQRDLYPFSALMIDLDHFKQINDTY 445

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD V+  ++  L+        V R GGEEF      +  + A I+A  +R+ +  +
Sbjct: 446 GHEVGDIVLFEVAKLLMQATRITDLVARYGGEEFVVLLPNTDLESAQIVAERIRETLHAN 505

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV-AKKSGRNRVVCFSD 260
            I +  G S+ IT S G+        ++++I  AD+A+Y+ AK  GR+RV  + +
Sbjct: 506 PIQV-EGDSLRITASIGVDTLNELGDLASLIRNADRAMYIGAKFQGRDRVASYQE 559


>gi|186685297|ref|YP_001868493.1| diguanylate cyclase with PAS/PAC sensor [Nostoc punctiforme PCC
           73102]
 gi|186467749|gb|ACC83550.1| diguanylate cyclase with PAS/PAC sensor [Nostoc punctiforme PCC
           73102]
          Length = 536

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 10/180 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDI 136
           Y+   +L E+     ++ + +  D L+GL N   F              +++++++  DI
Sbjct: 353 YLHKQVL-EIQTLQVQLREQAMRDGLTGLFNRRYFDEIFPKELIRAMRDSDRVALIIMDI 411

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK IND FGH  GD+VI   +D L     +   V R GGEEF  A  G ++++A   A
Sbjct: 412 DYFKNINDTFGHQAGDRVIQVFADLLRNYSDSQNIVCRYGGEEFVLALPGLTQEKAYQHA 471

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             +R   + +Q+  S G  IH T+S G+     H +    ++   DQALY AK  GRN +
Sbjct: 472 EQIRLSFQAAQLE-SGGKQIHTTVSGGVGVFPDHGKTTDELLQVVDQALYAAKLHGRNCI 530


>gi|295095931|emb|CBK85021.1| diguanylate cyclase (GGDEF) domain [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 349

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 68/260 (26%), Positives = 107/260 (41%), Gaps = 14/260 (5%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL--EYILVE 67
             W  +   L    P    +  +   +++   V  +      ++ L     L  + I   
Sbjct: 88  CYWFINVLQLPHPWPIFVTLLMAGMTALYFHPVALLCFTVPLWVSLPVASMLLNQEINYR 147

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYN-------RISQLSRIDCLSGLLNHSAFIS 120
              L ++   I +   YI  S  +E +           R+  L+  D L+   N  A   
Sbjct: 148 FAGLWVVFTFILVCGRYILLSWFEEAWRRNQQNQRLISRLDALAHQDPLTKTANRRAMEL 207

Query: 121 SLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLG 176
            L       ++ +++  D+DYFK  ND +GH  GD  +A +++ L     TP   V R G
Sbjct: 208 VLENAVEQGKRFAVLMLDVDYFKLYNDTYGHQAGDACLARVAEVLNTSVRTPEDVVSRYG 267

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPIST 235
           GEEF        E  A  +A  ++  + N+ I  S+   S ++T S GIA          
Sbjct: 268 GEEFVVILFDCEESVAEKVAARIQAGLRNAAIPHSASKVSEYVTASMGIAGYTAGLAGPE 327

Query: 236 IIYRADQALYVAKKSGRNRV 255
           II RAD ALY AK++GRNR 
Sbjct: 328 IIARADAALYRAKEAGRNRW 347


>gi|312197114|ref|YP_004017175.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EuI1c]
 gi|311228450|gb|ADP81305.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EuI1c]
          Length = 787

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 10/180 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +  +L  +  S   +   +  D L+GL N + F   L        N   S+V+ D+D FK
Sbjct: 333 NTRLLASVEASRQELRYQALHDPLTGLPNRTLFAERLHRALALRDNRPFSLVYCDLDDFK 392

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND  GH  GD+++   + +L         V RLGG+EFA        ++   L   L 
Sbjct: 393 RVNDTLGHAAGDELLRTTAARLREGVRPGDTVARLGGDEFAILL-EREHRDPEALCRRLA 451

Query: 201 KIIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +I         G    +  S G  +A+         ++  AD A+Y AK+ G+  ++ F
Sbjct: 452 SMIRA--PTTLKGQPHPVGASLGLVVADSSTPPEPDALLRDADLAMYAAKRQGKGGLIVF 509


>gi|54293727|ref|YP_126142.1| hypothetical protein lpl0780 [Legionella pneumophila str. Lens]
 gi|53753559|emb|CAH15014.1| hypothetical protein lpl0780 [Legionella pneumophila str. Lens]
          Length = 516

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 90/185 (48%), Gaps = 15/185 (8%)

Query: 87  GSILKELFISYNRISQLS-------RIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
            + L+E   +   I  L          D L+GL N  ++   +          +  LS+ 
Sbjct: 332 QARLQESEQNAEEIKNLLAFQKYRINHDSLTGLPNRESYEEHILDSFQRWKRSSSVLSLA 391

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK INDNFGH  GDKV+  ++        T  F+ R+GGEEF      +S +EA
Sbjct: 392 VCDIDHFKCINDNFGHLAGDKVLKKVAMIFKSSIRTVDFIARIGGEEFVFIFEQTSSKEA 451

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             +   LRK++E+          + +T+S G+     ++ I ++  RAD A+Y AKK+G+
Sbjct: 452 FGVLEKLRKLVEDCLFYYRD-KKVDVTVSFGLTTVTEEDDIESLFMRADNAMYKAKKAGK 510

Query: 253 NRVVC 257
           NRV  
Sbjct: 511 NRVEI 515


>gi|313498481|gb|ADR59847.1| Uncharacterized signaling protein PA1727 [Pseudomonas putida
           BIRD-1]
          Length = 695

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 101/214 (47%), Gaps = 13/214 (6%)

Query: 64  ILVENLSLVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +L+  L+++ +++  S+L   L   +  + + L ++   ++QL+  D L+ L N +    
Sbjct: 220 VLITTLAVLAVALLTSVLDARLEARTAELARSLTLANQELTQLALHDTLTDLPNRTLLAD 279

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            +     K        +++F D+D FK +ND FGH +GD ++  ++ +L     +   + 
Sbjct: 280 RIEQAIAKVAEQGGCFALMFIDLDGFKPVNDAFGHHIGDLLLKAVAARLRGHLHSQDTLA 339

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           R+GG+EF          +A  +A  ++++   S+    +   + ++ S GI     + + 
Sbjct: 340 RIGGDEFVLLVELQEPNDAMDVA--VKQVNLVSRPFRVAEHDLQLSASLGIVLYPGNGQD 397

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              ++  AD A+Y AK +G+N    F    N+  
Sbjct: 398 QHELLRNADAAMYHAKSAGKNGYSFFDVSMNSNA 431


>gi|152982285|ref|YP_001352393.1| diguanylate cyclase [Janthinobacterium sp. Marseille]
 gi|151282362|gb|ABR90772.1| diguanylate cyclase [Janthinobacterium sp. Marseille]
          Length = 300

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 9/178 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYF 139
            S + E  I   ++ +LS  D L+GL N             SL  Y+   S+  FD+D  
Sbjct: 122 ASNISERHILEGKLRELSDTDQLTGLFNRRKLEHDLTLHYESLLRYSVPTSVFIFDLDNL 181

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND  GH  GD++I  ++D             R GG+EF  A   +  ++A  LA  L
Sbjct: 182 KKINDTKGHHAGDEIIQAVADICRSAIRKADTACRFGGDEFVIALPNTELEQAMQLAERL 241

Query: 200 RKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                      S G ++ +T S G+ +           + RAD+ALY AK  G++R+V
Sbjct: 242 HDRFRKELSRFSVGDTV-VTASIGVTSMVPEDRSYEDTLKRADRALYEAKSMGKDRIV 298


>gi|149194244|ref|ZP_01871341.1| diguanylate cyclase (GGDEF domain) [Caminibacter mediatlanticus
           TB-2]
 gi|149135419|gb|EDM23898.1| diguanylate cyclase (GGDEF domain) [Caminibacter mediatlanticus
           TB-2]
          Length = 536

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 61/194 (31%), Positives = 90/194 (46%), Gaps = 11/194 (5%)

Query: 77  TISLLLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128
           TI+ +  Y+   S + E   +   +   + ID L+ L N           I++    N+K
Sbjct: 344 TIAYIKAYLKEVSSIVESKFTLELLHNQTIIDPLTKLYNRRFLENILNKIIANADRTNQK 403

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           ++ V  D+DYFK++ND +GH VGD ++  L++ L         V R GGEEF        
Sbjct: 404 VAFVMIDMDYFKKVNDTYGHDVGDMILKQLANILKSSIRESDIVVRFGGEEFLIILNNIK 463

Query: 189 EQEAA-ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYV 246
           ++E        +RK IE  +  I  G  I  TIS G +            I  AD ALY 
Sbjct: 464 DKECLFKTLEKIRKKIEEYEFQIPQGK-IKKTISMGASLYPDTCNSPWQCIKNADIALYK 522

Query: 247 AKKSGRNRVVCFSD 260
           AK SGRN++V F +
Sbjct: 523 AKNSGRNKIVIFEN 536


>gi|119493624|ref|ZP_01624273.1| hypothetical protein L8106_18616 [Lyngbya sp. PCC 8106]
 gi|119452544|gb|EAW33728.1| hypothetical protein L8106_18616 [Lyngbya sp. PCC 8106]
          Length = 737

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
            I  EL     ++   +  D L+GL N   F   L          N+ +++ + D++ FK
Sbjct: 546 RIAAELEHYNAQLKVHAEQDPLTGLANRKVFYERLAQSLEWATNNNKLVALFYLDLNDFK 605

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            IND  GH +GD ++  ++ +L     +   V RLGG+EF     G     + A +A  +
Sbjct: 606 IINDTMGHHIGDLLLKTVAQRLNDCLRSSDTVARLGGDEFTIILPGIPRKADVAKVAEKI 665

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + I  +Q     G  + +T S GI+        ++ +  +AD A+Y AK+SG+NR    
Sbjct: 666 LQTI--NQETHLEGHVVSVTTSIGISVYPLDAHDLNLLTQKADDAMYQAKRSGKNRYKFA 723

Query: 259 S 259
           +
Sbjct: 724 T 724


>gi|311279749|ref|YP_003941980.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter cloacae SCF1]
 gi|308748944|gb|ADO48696.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter cloacae SCF1]
          Length = 410

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 77/174 (44%), Gaps = 11/174 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQ 141
            + E       +   +  D L+GLLN   F +   S++           ++  D D FK 
Sbjct: 238 DITEQKRLEQELEHAALRDSLTGLLNRRQFYALTESHSALPIPFTSDYCLLLVDTDNFKS 297

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND++GH  GD+V+  LS  L        ++ R GGEEFA     +S + A  +A  +R 
Sbjct: 298 INDSYGHLKGDEVLIHLSRILESCSRKGDYIFRWGGEEFAVLLPRTSLETALAVAESMRD 357

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  S     +      T+S G+A     E    +  R D ALY AK  GRN+V
Sbjct: 358 AVTKS----VNSELPEFTVSIGVARHQPGETRDALFRRVDAALYQAKNGGRNKV 407


>gi|221064900|ref|ZP_03541005.1| diguanylate cyclase [Comamonas testosteroni KF-1]
 gi|220709923|gb|EED65291.1| diguanylate cyclase [Comamonas testosteroni KF-1]
          Length = 536

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 8/169 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHP 149
           L  +  ++ +    D L+GL N     +++ ++       S++  DID+FK+IND FGH 
Sbjct: 362 LQRNITKLREDVNTDPLTGLGNRRHLEAAITAFQTQALPFSVIAIDIDHFKRINDGFGHD 421

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+  L+  +  V        R+GGEEF     G++ + AA  A  LR+++E  ++ 
Sbjct: 422 TGDEVLRQLARTMREVSRIDDVPCRMGGEEFLLLLPGTAPEAAAHAAERLRQLVEKMEMP 481

Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
               P  HITIS G+A        I  +  +AD  LY AK+ GRNRV+ 
Sbjct: 482 ----PVGHITISLGVAHWPDSAPDIKAVFQQADAMLYAAKRGGRNRVMV 526


>gi|226224781|ref|YP_002758888.1| hypothetical protein Lm4b_02199 [Listeria monocytogenes Clip81459]
 gi|254825263|ref|ZP_05230264.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J1-194]
 gi|254853300|ref|ZP_05242648.1| GGDEF domain-containing protein [Listeria monocytogenes FSL R2-503]
 gi|254993341|ref|ZP_05275531.1| hypothetical protein LmonocytoFSL_10262 [Listeria monocytogenes FSL
           J2-064]
 gi|255521935|ref|ZP_05389172.1| hypothetical protein LmonocFSL_12057 [Listeria monocytogenes FSL
           J1-175]
 gi|300764018|ref|ZP_07074014.1| hypothetical protein LMHG_10737 [Listeria monocytogenes FSL N1-017]
 gi|225877243|emb|CAS05957.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258606660|gb|EEW19268.1| GGDEF domain-containing protein [Listeria monocytogenes FSL R2-503]
 gi|293594509|gb|EFG02270.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J1-194]
 gi|300515359|gb|EFK42410.1| hypothetical protein LMHG_10737 [Listeria monocytogenes FSL N1-017]
 gi|328465980|gb|EGF37161.1| hypothetical protein LM1816_07998 [Listeria monocytogenes 1816]
          Length = 357

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 73/255 (28%), Positives = 116/255 (45%), Gaps = 18/255 (7%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           I     K LE ++       + +F    IA    + N+ L  +   P + +   +  +++
Sbjct: 115 ITALFSKRLEKYN------IWGVFILNIIACGFVVVNLHLI-LAKEPDFWINMFIFVSIA 167

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----N 126
           LVI +++  L+   I     K+LF  Y    Q S +D L+ L N   F   +       +
Sbjct: 168 LVIGAVSAGLMKNMIKS---KQLFQKY---EQDSTLDYLTRLSNVRQFDEKINHVMDDGS 221

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
            +++++  DIDYFK IND +GH  GD ++  L+  L           R GGEEF+   L 
Sbjct: 222 RQVTLMLIDIDYFKNINDTYGHDAGDAILKQLAIILKRNTSDGSEAFRNGGEEFSIVLLD 281

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALY 245
              ++    A  +RK  E+    I SG  + ITIS G++        S  +   AD+ALY
Sbjct: 282 CPIEKGNFFAEQVRKETEDHDFMIPSGKLVKITISVGVSSSKDGANTSEGLFKSADEALY 341

Query: 246 VAKKSGRNRVVCFSD 260
            AK +GRNRV    +
Sbjct: 342 KAKLTGRNRVCIADE 356


>gi|150019511|ref|YP_001311765.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052]
 gi|149905976|gb|ABR36809.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052]
          Length = 356

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 78/235 (33%), Positives = 120/235 (51%), Gaps = 18/235 (7%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
           YF +     I+T+I+I+ +      + P  G   I     S++++S  +   L YIS + 
Sbjct: 132 YFLMTIVNIISTIIWISLVLKDMNLILPALGNFVI-----SIIMVSTVVYYELNYISKT- 185

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
                  Y ++   SR D L+GL N  AF   L           E LSI+  DID+FK I
Sbjct: 186 ----NKMYKKLKFDSRKDFLTGLNNVRAFNGLLDKTIRNTLQKKENLSILMIDIDFFKHI 241

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD V+  LS  L+    T   + R GGEEF A  L  + + A  +A  +RK 
Sbjct: 242 NDTYGHHSGDLVLKQLSKLLIDSCRTFDIISRNGGEEFTAVLLDCNYKHAVDIAEKIRKN 301

Query: 203 IENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
           +E +   + +  +  IT+S GI+      + I+T++ +AD ALY+AK++GRN+V 
Sbjct: 302 VECNTFKLDNNATAKITVSIGISSYPDITKNINTLLSKADNALYLAKRTGRNKVC 356


>gi|300864704|ref|ZP_07109560.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300337310|emb|CBN54708.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 870

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 11/171 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +   +  D L+GL N   F   L           E L++VF D+D FK IND  GH VGD
Sbjct: 432 VRHQASHDQLTGLANRLLFNERLSLALANANQRGEMLAVVFLDLDGFKHINDTLGHAVGD 491

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINIS 211
           +++  ++ +L+    T   + R GG+EF        S ++   +   +   + N+   + 
Sbjct: 492 QLLQCVAHRLITSLRTGDIIARWGGDEFTFLFSHIKSAEDTTKICQLILHSL-NTPFQLE 550

Query: 212 SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
               ++I  S GIA      E   T++  AD A+Y AK+ GRN    +S  
Sbjct: 551 D-RELYIKASLGIALAPYDGEDADTLLKNADAAMYRAKQQGRNNYQLYSPA 600


>gi|325981379|ref|YP_004293781.1| response regulator receiver modulated diguanylate cyclase
           [Nitrosomonas sp. AL212]
 gi|325530898|gb|ADZ25619.1| response regulator receiver modulated diguanylate cyclase
           [Nitrosomonas sp. AL212]
          Length = 651

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 87/174 (50%), Gaps = 11/174 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL ++  ++   +  D L+ L N  + + +L           + + I+  DID+FK IND
Sbjct: 453 ELAVTNRKLEYYALTDMLTELPNRRSGMETLSETWSIANRSGQLMVIMLIDIDHFKSIND 512

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSEQEAAILANDLRKI 202
           N+GH +GDKV+  +S  +           R+GGEEF        +  + + + A  LR  
Sbjct: 513 NYGHSIGDKVLKEVSSIIRKTARKGDTFCRMGGEEFLVVCQLGNADVKSSILFAERLRHQ 572

Query: 203 IENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255
           I   QIN+     I ITIS GIA +  +      ++  AD+ALY AK +GRNRV
Sbjct: 573 ISQQQINVDEIH-IQITISIGIALKEINMRNEDHLVIAADKALYAAKNAGRNRV 625


>gi|307155228|ref|YP_003890612.1| PAS/PAC and GAF sensors-containing diguanylate cyclase [Cyanothece
           sp. PCC 7822]
 gi|306985456|gb|ADN17337.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp.
           PCC 7822]
          Length = 944

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 79/173 (45%), Gaps = 11/173 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y ++     +D L+ + N   F          L      LS++  DIDYFKQ ND +GHP
Sbjct: 771 YQQLQAQILVDELTQIANRRCFERDFNHEWYRLTREKRFLSLLLCDIDYFKQYNDTYGHP 830

Query: 150 VGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            GD  +  ++  L          V R GGEEF      +    A  +A  +++ I++  I
Sbjct: 831 AGDICLKQVAQALKQAARRMTDLVARYGGEEFVILLPNTDSYGATQVAVAVQQAIDHLHI 890

Query: 209 -NISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCF 258
            +++S  +  +TIS GIA            +I  ADQALY AK  GR+R   +
Sbjct: 891 PHLASAVASSVTISIGIASMIPTADTCPLDLINAADQALYQAKAQGRDRYWVY 943


>gi|254506530|ref|ZP_05118671.1| sensory box/ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219550403|gb|EED27387.1| sensory box/ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 633

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 64/192 (33%), Positives = 92/192 (47%), Gaps = 19/192 (9%)

Query: 84  YISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---------EKLSIVF 133
           Y++  I +       NR+ +LS  D L+GL N   F + + S +         E  ++  
Sbjct: 449 YVASFIDITHRKELENRLRELSERDPLTGLWNRRKFDAEMSSLSLKTKRYPNSETATLAL 508

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK+IND +GH  GD  I  ++  L         V R+GGEEFA     +   EA 
Sbjct: 509 LDIDHFKRINDTYGHDKGDVTIKEVARILTNHLRETDVVARIGGEEFAIIMPHTPLNEAE 568

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           I+ N +R  I           S++ITIS GI E       S    RAD ALY +K  GRN
Sbjct: 569 IVINRVRTAI-------HIETSLNITISGGITEIGPTAGNS--YKRADIALYESKTLGRN 619

Query: 254 RVVCFSDIENNT 265
           +V   S +E+++
Sbjct: 620 QVNILSVVESDS 631


>gi|218679447|ref|ZP_03527344.1| diguanylate cyclase with PAS/PAC sensor [Rhizobium etli CIAT 894]
          Length = 182

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 76/168 (45%), Gaps = 11/168 (6%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+G++N  AF  +           N   S++  DID FK  ND +GHP GD+ +
Sbjct: 3   LAETDGLTGIVNRRAFDEAFARETAGSARKNTPFSLLMVDIDRFKAYNDTYGHPAGDQCL 62

Query: 156 AFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
             +S  L   V      V R GGEEF      +S + A I+A    + +    I  S   
Sbjct: 63  RVVSKCLRQSVSRPADIVARYGGEEFVVFLPDTSAKGAMIVAEQFARRLAKENIAHSGSE 122

Query: 215 SIHITISAGIAERCHK---EPISTIIYRADQALYVAKKSGRNRVVCFS 259
              +T S G+A           + ++  AD ALY AK  GRNR++  S
Sbjct: 123 FSRVTASIGLACATGAVLRTNPNRLLTEADAALYDAKTQGRNRILAHS 170


>gi|156976668|ref|YP_001447574.1| hypothetical protein VIBHAR_05442 [Vibrio harveyi ATCC BAA-1116]
 gi|156528262|gb|ABU73347.1| hypothetical protein VIBHAR_05442 [Vibrio harveyi ATCC BAA-1116]
          Length = 539

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 57/200 (28%), Positives = 99/200 (49%), Gaps = 10/200 (5%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-- 124
           E+  L+ + + +S++L Y+        F    RI  L+  D L+GL+N +AF S      
Sbjct: 339 EHEWLMQVGVVLSIVLAYLIARFQLRAFSDNQRIYYLAHHDSLTGLVNRAAFQSQASETL 398

Query: 125 -----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                   ++ +++ D+D FK IND +GH  GDK +  ++  +  VFG+   + RLGG+E
Sbjct: 399 SQCLKAGREVCLIYLDLDNFKFINDEYGHAAGDKTLQHVASVMQRVFGSKALLARLGGDE 458

Query: 180 FAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTII 237
           FA         Q+    A+ L ++I++  I +       +T S G          +  ++
Sbjct: 459 FAILLSSQEHMQDPEHFASSLIQLIQD-PIEVRPDVFHQVTTSIGGCYAKETTCTLDELM 517

Query: 238 YRADQALYVAKKSGRNRVVC 257
           ++AD A+Y AK+SG+NR   
Sbjct: 518 HQADMAMYEAKRSGKNRYFF 537


>gi|77463986|ref|YP_353490.1| response regulator receiver modulated diguanylate cyclase
           [Rhodobacter sphaeroides 2.4.1]
 gi|77388404|gb|ABA79589.1| response regulator receiver modulated diguanylate cyclase
           [Rhodobacter sphaeroides 2.4.1]
          Length = 461

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 89/169 (52%), Gaps = 13/169 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+ +D L+GL N     + L +        +E+ +++  D+D FK +ND +GH  GD V
Sbjct: 287 RLAVVDPLTGLYNRRYAGAHLAAVAERARAADERFAVMVIDLDRFKSVNDRWGHGAGDAV 346

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSG 213
           +  ++ +L         + R+GGEEF  A       ++A  +A  LR+ +E   + +  G
Sbjct: 347 LVAVARRLHANLRPGDLIARIGGEEFLVALPDVPRPEDAHAVAERLREAVEEEPVPLPGG 406

Query: 214 PSIHITISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNRVVC 257
            S+ +TIS G+A    +     EP+  ++ RAD AL +AK +GRN+V  
Sbjct: 407 GSLRVTISVGLALSPDEAGRRAEPVDAVVQRADSALLLAKSAGRNQVTI 455


>gi|39935836|ref|NP_948112.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009]
 gi|192291484|ref|YP_001992089.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
 gi|39649690|emb|CAE28211.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris
           CGA009]
 gi|192285233|gb|ACF01614.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
          Length = 411

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 68/249 (27%), Positives = 116/249 (46%), Gaps = 17/249 (6%)

Query: 16  EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIIS 75
            +  +S       I   +     +   I +A+  L+    + F G  ++++  + LV+ +
Sbjct: 138 AERRKSMHRRWPTIVVPLLHGAALMLPIVLAD--LWPSPHSGFAGNVWVVLFAVELVLYA 195

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEK 128
           I       ++   ++ E  +S ++ +  + +D L+G+LN   F  +              
Sbjct: 196 IGTV----FVIFMLVSERSVSLHKTA--ASLDPLTGMLNRRGFSEACARMIEREAMAGRP 249

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +S + FDID+FK IND FGHP GD+V+   +  +          GR+GGEEFAA      
Sbjct: 250 VSALIFDIDHFKSINDRFGHPAGDEVLKLFAAIVTNSLRISDLSGRIGGEEFAALLP-CP 308

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
             EA   A+ +R+  +N  I +   P +  T+S G+A       +  ++  AD ALY AK
Sbjct: 309 IDEAVTAADRVREAFQNCGIEVDDAP-VATTVSIGVAGGPAAVELEVLLAAADTALYQAK 367

Query: 249 KSGRNRVVC 257
           + GRNRVV 
Sbjct: 368 RGGRNRVVA 376


>gi|311697006|gb|ADP99879.1| sensory box/GGDEF/EAL family protein [marine bacterium HP15]
          Length = 811

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 34/226 (15%)

Query: 58  FYGLEYILVENLSLVIISITISLLL------GYIS-GSILKELFISYNRISQLSRIDCLS 110
           + G  +   ++ S+    +TIS +L      GY++  S +  L     ++  L+  D L+
Sbjct: 329 WRGEIWSRRKDGSVFPELLTISTILNKDEPVGYVTVFSDISTLKAHQEKLDYLAHHDPLT 388

Query: 111 GLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           GL N   F S L             ++++F DID FK IND+ GHP GD+++  ++ +L 
Sbjct: 389 GLPNRLLFNSRLQQSIRLSERTGRSIAVLFIDIDRFKNINDSMGHPTGDELLKHVAARLR 448

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                     RLGG+EF          + A  +A+ L K  + +      G  I +T+S 
Sbjct: 449 EQLRASDTAARLGGDEFVVLLEDIEGAEHAGQVADTLMKAFKET--FAMDGVEIGVTVSM 506

Query: 223 GIAERCHKEP---------ISTIIYRADQALYVAKKSGRNRVVCFS 259
           GI+                 +         +Y AK++GRN    +S
Sbjct: 507 GISLFPQDSNDAAELLADADAA--------MYQAKENGRNTYAFYS 544


>gi|304396821|ref|ZP_07378701.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Pantoea sp.
           aB]
 gi|304355617|gb|EFM19984.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Pantoea sp.
           aB]
          Length = 750

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 62/274 (22%), Positives = 117/274 (42%), Gaps = 22/274 (8%)

Query: 10  SIWLCHEKNLESFSPHTFM-IYFSIFFSIFIATVIFIANIFLFYI--------GLTPFYG 60
           ++WL            T + I  S+     IA + +   +   +         G+   + 
Sbjct: 192 ALWLAFNLREGQTGRVTLLRIGASVVMGCAIAGMHYTGMMAAEFPAHSHSMGQGVNSNWL 251

Query: 61  LEYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSA 117
              + V  +S++ I++ +S+L   +      +   L  +   ++QL+  D L+ L N   
Sbjct: 252 AILVTVVTISILGITLLVSMLDARMQARTSILASSLAEANRELAQLALHDNLTRLPNRIL 311

Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
               L     K        +++F D+D FK +ND FGH +GD ++  +++++        
Sbjct: 312 LEDRLEQAINKANREQTLFALMFMDLDGFKAVNDAFGHHIGDSLLVGVTERMSQQMAGYY 371

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-H 229
            + RLGG+EF          +AA +A+ L K ++    +IS    + +++S GIA     
Sbjct: 372 TLARLGGDEFVLLVEIDDPNDAAAIADKLVKAVDR-PFDISR-YELVVSLSLGIAVYPGD 429

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            E    +++ AD A+Y  K +GRN    F    N
Sbjct: 430 GEDERELMFNADAAMYHTKNNGRNGYTFFQPSMN 463


>gi|312200367|ref|YP_004020428.1| diguanylate cyclase [Frankia sp. EuI1c]
 gi|311231703|gb|ADP84558.1| diguanylate cyclase [Frankia sp. EuI1c]
          Length = 523

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 104/244 (42%), Gaps = 11/244 (4%)

Query: 20  ESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS 79
            S SP T  +  S+ +       + +       I  TP    E      + L+++ I   
Sbjct: 272 RSGSPRTLRLRMSLPYVALGTAGLLVVGQL---IAKTPIDNAER--AGLIGLLLLVIVRQ 326

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-----LGSYNEKLSIVFF 134
           +++   +  +LK + IS  ++   +  D L+GL N + F            ++  ++V+ 
Sbjct: 327 MMIQSENTRLLKAVQISRRQLRYQAFHDPLTGLANRALFTERVRAALARRGSQPFALVYC 386

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FKQ+ND FGH VGD ++   +D+L         V RLGG+EFA      +E +   
Sbjct: 387 DLDNFKQVNDTFGHAVGDALLRTTADRLRAGVRPVDTVARLGGDEFAILLDDRNE-DPRR 445

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
               L   I    +       + +++   IA+         +++ AD A+Y AK+     
Sbjct: 446 FCERLADAIRAPTLLADRLKPVGVSLGVVIADGDRPADPDALLHDADLAMYAAKRQAGGG 505

Query: 255 VVCF 258
           +V +
Sbjct: 506 LVVY 509


>gi|262274875|ref|ZP_06052686.1| putative c-di-GMP phosphodiesterase A-related protein [Grimontia
           hollisae CIP 101886]
 gi|262221438|gb|EEY72752.1| putative c-di-GMP phosphodiesterase A-related protein [Grimontia
           hollisae CIP 101886]
          Length = 633

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 7/175 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
                +L++ D L+GL N   F   L      N  L + + DID FK IND+ GH +GD+
Sbjct: 198 QQTFEKLAQFDALTGLYNRHGFSRRLVQLINSNTPLLMFYLDIDNFKNINDSLGHHIGDR 257

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILANDLRKIIENSQINISS 212
           V+  ++ +L         +G LGG+EFA      SS++ A  L+  +  II  SQ     
Sbjct: 258 VLQDIAQRLRKRLPPDTILGHLGGDEFAILLPEHSSDEVANELSRRVVDII--SQPFDLY 315

Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             S ++  S G+           +++  AD A+Y AK+ GRNR+V ++   N   
Sbjct: 316 HFSKYLACSIGMVRYPDDGKDARSLLQNADTAMYEAKERGRNRLVTYNQHMNKEA 370


>gi|134096466|ref|YP_001101541.1| putative signal peptide [Herminiimonas arsenicoxydans]
 gi|133740369|emb|CAL63420.1| Conserved hypothetical protein; putative GGDEF domain
           [Herminiimonas arsenicoxydans]
          Length = 492

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 59/168 (35%), Positives = 86/168 (51%), Gaps = 8/168 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFI-----SSLGSYNE--KLSIVFFDIDYFKQINDNFGHP 149
             R+ Q++  D L+GLLN  AF      + L S      LS + FDID+FK +NDN GH 
Sbjct: 316 QRRLEQIAGTDTLTGLLNRQAFEIVFQQAILDSERRRIPLSAILFDIDFFKMVNDNHGHL 375

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+++  ++            V R GGEEF         ++A  LA  +R +I      
Sbjct: 376 AGDRILQSIAAITKNAVRESDIVTRWGGEEFLVLLKDCPLEQATALAEKIRSMIAGHDFE 435

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +   +H+T+S G+AE  ++E   +   RAD ALY AK  GRNRV+ 
Sbjct: 436 LPASA-LHLTVSLGVAEYAYRETWLSFFGRADTALYQAKSEGRNRVIV 482


>gi|15598373|ref|NP_251867.1| hypothetical protein PA3177 [Pseudomonas aeruginosa PAO1]
 gi|107102707|ref|ZP_01366625.1| hypothetical protein PaerPA_01003773 [Pseudomonas aeruginosa PACS2]
 gi|116051166|ref|YP_790003.1| sensory box GGDEF domain-containing protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218890631|ref|YP_002439495.1| putative sensory box/GGDEF domain protein [Pseudomonas aeruginosa
           LESB58]
 gi|254236139|ref|ZP_04929462.1| hypothetical protein PACG_02103 [Pseudomonas aeruginosa C3719]
 gi|254241864|ref|ZP_04935186.1| hypothetical protein PA2G_02585 [Pseudomonas aeruginosa 2192]
 gi|9949295|gb|AAG06565.1|AE004742_1 hypothetical protein PA3177 [Pseudomonas aeruginosa PAO1]
 gi|115586387|gb|ABJ12402.1| putative sensory box/GGDEF domain protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126168070|gb|EAZ53581.1| hypothetical protein PACG_02103 [Pseudomonas aeruginosa C3719]
 gi|126195242|gb|EAZ59305.1| hypothetical protein PA2G_02585 [Pseudomonas aeruginosa 2192]
 gi|218770854|emb|CAW26619.1| putative sensory box/GGDEF domain protein [Pseudomonas aeruginosa
           LESB58]
          Length = 307

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 8/163 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q +  D L+G  N  A   +LG   E        LS++  DID+FK++ND++GH VGD+ 
Sbjct: 145 QTALRDALTGTGNRIAMDQALGRELELARRNLQPLSVLMLDIDHFKRVNDHYGHAVGDEA 204

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +++ +         V R GGEEF      +  Q A ++   LR+ +E       +G 
Sbjct: 205 LKAVAETIKDHLRNVDMVFRFGGEEFLVLLSSTPLQAACMVGERLRQAVEELDYRH-AGE 263

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + ++IS G A+    E    ++ R D+ALY AK+ GRNR+ C
Sbjct: 264 PLKLSISLGCADLRPGEGSDDLLRRVDEALYEAKRDGRNRLRC 306


>gi|307153992|ref|YP_003889376.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7822]
 gi|306984220|gb|ADN16101.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7822]
          Length = 905

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 87/184 (47%), Gaps = 12/184 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQ 141
           + +      ++   +  D L+G  N +  +  L          +    +++F D+D FK 
Sbjct: 459 ITQRKQIEAQLRHDALHDTLTGFPNRALLMDRLAQAIKREKRRFGSNFAVLFLDLDRFKL 518

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           +ND+ GH +GD+++   +++L  V  +   + RLGG+EF          +EA ++A  + 
Sbjct: 519 LNDSLGHLIGDELLVAFAERLQQVRRSTDTIARLGGDEFVILLEDLCKVEEAILVAERIN 578

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +++ +S   I     + IT S G+A   ++ +  + I+  AD A+Y AK  GR R   F 
Sbjct: 579 QVLSSS--FIIDQQEVFITASIGVAFSAYRYQQPAQILRDADTAMYYAKNRGRARYEVFD 636

Query: 260 DIEN 263
              +
Sbjct: 637 PSMH 640


>gi|254457269|ref|ZP_05070697.1| GGDEF domain/pas/pac sensor domain protein [Campylobacterales
           bacterium GD 1]
 gi|207086061|gb|EDZ63345.1| GGDEF domain/pas/pac sensor domain protein [Campylobacterales
           bacterium GD 1]
          Length = 428

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 77/164 (46%), Gaps = 11/164 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L   D L+ + N + F   +          +    I+  DID+FK IND +GH VGD
Sbjct: 266 LEVLYVTDPLTQIYNRTYFDELMTSIALHQRKADTNFIILITDIDHFKSINDTYGHQVGD 325

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  ++  +         V R GGEEF      +   EA ++A  LR  IE ++I    
Sbjct: 326 EALKDVARVIKDSLRENDVVARWGGEEFVIMLKNTELDEAQMIAEKLRANIEKTKIQ--- 382

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              I IT S G+ +    E  +    RAD ALY AK+SGRN VV
Sbjct: 383 -NVIDITTSIGLTKYYVGEDTNLTFKRADNALYKAKESGRNMVV 425


>gi|325291390|ref|YP_004267571.1| diguanylate cyclase [Syntrophobotulus glycolicus DSM 8271]
 gi|324966791|gb|ADY57570.1| diguanylate cyclase [Syntrophobotulus glycolicus DSM 8271]
          Length = 358

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 68/264 (25%), Positives = 116/264 (43%), Gaps = 25/264 (9%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVI---FIANIFLFYIGLTPFYGL----E 62
           ++W  +   +  F+P+  M++ +I   +F+   +   +  + FL  + L    GL     
Sbjct: 98  ALWFAN-GGISGFTPYLSMVFAAIT-VVFLNGKLKSRYSISYFLVLLSLITIQGLYPDSV 155

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ----LSRIDCLSGLLN---- 114
           Y  V  L           ++ +   ++L      YNRI +    LS  D ++GL N    
Sbjct: 156 YFPVSRLQGYWDKAIFFQMVFFFIANLLYVYSEEYNRIHKKAVKLSLTDEMTGLYNWRFV 215

Query: 115 HSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
            +     L        + S++  DID FK IND +GH  GDK I  ++  L         
Sbjct: 216 RNHIQKDLNKSIRTGVQCSVLMIDIDNFKIINDRYGHQAGDKAIKMIAGILKTSVRNIDI 275

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
            GR GG+EF       + Q A  +A  +RK +E +   +  G  + +T+S G+A+     
Sbjct: 276 AGRYGGDEFFVLLPEINAQAAETIAERIRKTVEET--FLKDG--MPLTVSIGVAD-IQGS 330

Query: 232 PISTIIYRADQALYVAKKSGRNRV 255
            +  I   AD+ +Y AK +G+N+V
Sbjct: 331 TLDEIFRNADKNMYKAKIAGKNKV 354


>gi|288957149|ref|YP_003447490.1| GGDEF-domain-containing signaling protein [Azospirillum sp. B510]
 gi|288909457|dbj|BAI70946.1| GGDEF-domain-containing signaling protein [Azospirillum sp. B510]
          Length = 1021

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 12/189 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDI 136
           S + + +       +  L+  D L+GL N       +               L+++F D+
Sbjct: 546 SYTDITDQKRQQAWLDHLAHFDPLTGLPNRLTLEQHVDRLIADNKASGNAAPLALLFLDM 605

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK IND FGH  GD+++  L  ++    G  +F+ RLGG+EF     G   +E   +A
Sbjct: 606 DNFKFINDGFGHKSGDELLMMLGLRIRKGAGDGVFLARLGGDEFVVVVQGGDAEEPVEVA 665

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             + + +      +  G    ++ S GIA           ++  AD A+Y AK SGR R+
Sbjct: 666 RRVEQAMAA--PFLVEGQHFFVSCSVGIARYPWDGRCFDDLLQNADTAMYRAKDSGRGRI 723

Query: 256 VCFSDIENN 264
             F+   N 
Sbjct: 724 CTFTSDMNR 732


>gi|56419998|ref|YP_147316.1| hypothetical protein GK1463 [Geobacillus kaustophilus HTA426]
 gi|56379840|dbj|BAD75748.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 716

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 84/209 (40%), Gaps = 6/209 (2%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           E++ +E     II    +L    ++   + E      ++ QL+  D L+G+ N S F   
Sbjct: 249 EWVWMEAQGKAIIDEAGTLDCVIVTVKNISERKRYEEKLRQLAYFDSLTGIANRSYFERH 308

Query: 122 LGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           +          ++ + D D FK IND+F H  GD  +     ++        F  R+GG+
Sbjct: 309 IHELIASQTPFALCYLDFDKFKWINDHFSHQAGDYFLREAVKRVERALRPGDFFARIGGD 368

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTII 237
           EF       ++ E   LA  L       +        I  T+S GIA        I  ++
Sbjct: 369 EFVLLLPNITKTEMTALAEQLVSSF--HEPFYYEKQLIQSTLSIGIAFFPKDSDRIEQVM 426

Query: 238 YRADQALYVAKKSGRNRVVCFSDIENNTC 266
             ADQALY  K+ GRN    +   E+   
Sbjct: 427 KYADQALYEVKERGRNGYAFYRPTEHRHA 455


>gi|323488359|ref|ZP_08093607.1| diguanylate cyclase [Planococcus donghaensis MPA1U2]
 gi|323398017|gb|EGA90815.1| diguanylate cyclase [Planococcus donghaensis MPA1U2]
          Length = 325

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 11/174 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFK 140
           G+  +EL      + QL+  D L+G  N       L           +++++  DID+FK
Sbjct: 152 GNKQQELLALNLELQQLAITDSLTGSKNRRYLEERLTHFLVQAEKGREVTVLILDIDHFK 211

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND  GH +GD V+  L+ +L  V G+   V R GGEEF         +E     N + 
Sbjct: 212 RVNDTHGHHIGDAVLKELARRLEEVVGSTGIVTRFGGEEFVIIIPDVGAKEGLAKGNIIC 271

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           K +E++     +  ++ +T+S G+A     +  S+ + RAD  LY AK  GRN 
Sbjct: 272 KYMESA-----NWINVPVTVSIGVAVHLPGDDTSSWLSRADSYLYKAKADGRNC 320


>gi|300705270|ref|YP_003746873.1| hypothetical protein RCFBP_21112 [Ralstonia solanacearum CFBP2957]
 gi|299072934|emb|CBJ44290.1| conserved membrane protein of unknown function, putative signal
           transduction, ggdef domain [Ralstonia solanacearum
           CFBP2957]
          Length = 972

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 10/179 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
           Y     + E   S   +S+++  D L+GL N       L             + +++ D+
Sbjct: 792 YAFVQDVTEAKRSEMELSRMAHFDALTGLANRYELYERLRAALERRQRQPAPMGVLYLDV 851

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAIL 195
           D+FK+IND +GH  GD V+  ++ +L         V RL G+EF        +  +A   
Sbjct: 852 DHFKRINDTYGHAAGDAVLVEVARRLQHTVRRTDTVARLAGDEFVILLDPIDTSDDALHT 911

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRN 253
           A  +   I    I +    ++ IT S G+A           ++  AD+ALY AK  GR+
Sbjct: 912 ARKVVTAIR-PPIQLRGDIALKITASIGVACPGPDAADADAVLREADRALYWAKSRGRD 969


>gi|293606971|ref|ZP_06689316.1| sensory box/GGDEF/GAF/EAL domain protein [Achromobacter piechaudii
           ATCC 43553]
 gi|292814631|gb|EFF73767.1| sensory box/GGDEF/GAF/EAL domain protein [Achromobacter piechaudii
           ATCC 43553]
          Length = 935

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 20/226 (8%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISG--------SILKELFISYNRISQLSRIDCL 109
           ++G  +   +N S     +TIS +              S +  L  +  ++ +++  D L
Sbjct: 333 WHGELWCRRKNGSQFAALLTISAVPDMRGNIEHYAAMFSDITALKENQQQLERVAHYDLL 392

Query: 110 SGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GL N       L             L +V  D+D FK++ND  GH VGDK+++ LS ++
Sbjct: 393 TGLPNRLLLGDRLKQAIAQTRRRGMHLVVVLIDLDGFKKVNDQHGHAVGDKLLSVLSRRM 452

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITIS 221
             V      + RLGG+EF A  +     + ++    L ++IE +   +  G ++  ++ S
Sbjct: 453 TQVLREGDTLARLGGDEFVAVLV--DLPDISLSVPILDRLIEVAAQPVPIGDALCEVSAS 510

Query: 222 AGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            G++     E I    ++ +ADQA+Y AK++G+NR   F   ++ T
Sbjct: 511 IGVSYYPQAEDIDADQLLRQADQAMYFAKQAGKNRYHVFDTEKDRT 556


>gi|270158623|ref|ZP_06187280.1| sensory box protein/GGDEF domain/EAL domain-containing protein
           [Legionella longbeachae D-4968]
 gi|289166555|ref|YP_003456693.1| regulatory protein (GGDEF, EAL, PAS and PAC domains) [Legionella
           longbeachae NSW150]
 gi|269990648|gb|EEZ96902.1| sensory box protein/GGDEF domain/EAL domain-containing protein
           [Legionella longbeachae D-4968]
 gi|288859728|emb|CBJ13701.1| putative regulatory protein (GGDEF, EAL, PAS and PAC domains)
           [Legionella longbeachae NSW150]
          Length = 974

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 100/225 (44%), Gaps = 20/225 (8%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLL--------LGYI-SGSILKELFISYNRIS 101
            Y G  PFY +E   +     +   + I  +        L YI     + +       +S
Sbjct: 482 LYDGEIPFYQMEKRYIRKDKKITWILLIGAIIRNEQGTPLYYIGQFQDINDKKEKEKELS 541

Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
             + ID L+GL+N +   +SL         + ++ ++ F D+D FKQ+ND+ GH  GD++
Sbjct: 542 IKAYIDTLTGLVNRNQLENSLNLTILSALRHQQQFAVFFIDLDNFKQVNDSLGHDAGDEL 601

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSG 213
           +  +SD+            RLGG+EF        S + AA+ A ++  I+    I I   
Sbjct: 602 LKVISDRFRNSIRKTDIAARLGGDEFILVLHDIKSPEIAAVFAENILNIL-IKPITIKE- 659

Query: 214 PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             + +T S GI+      E   ++I  AD ALY AK+ GRN    
Sbjct: 660 HELLVTASIGISFYPADGEDYHSLINSADLALYKAKEEGRNNYQF 704


>gi|264677129|ref|YP_003277035.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262207641|gb|ACY31739.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 352

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 12/185 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL ++  +++++  +D L+GL+N       L          +  L+++  D+D+FK  ND
Sbjct: 163 ELHLANQKLNEMVELDALTGLVNRRGLDRMLHAEIAAARRESRPLTLMLCDLDHFKHFND 222

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD+ +  +   L            R GGEEFA     +    +   A  L +++
Sbjct: 223 TYGHVQGDECLKQVGRLLREVCVRPRDIAARYGGEEFAMILPNTPRSGSMTFARALGQML 282

Query: 204 ENSQI-NISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  +I    +   I +T+S GI      E     +++ RAD+ALY AK  GRNR   F +
Sbjct: 283 KFLKIRPPGAAEDIPLTLSGGITTCIPDEHTSAESMLMRADEALYAAKSQGRNRFFSF-E 341

Query: 261 IENNT 265
           ++ +T
Sbjct: 342 MQMDT 346


>gi|218549953|ref|YP_002383744.1| diguanylate cyclase AdrA [Escherichia fergusonii ATCC 35469]
 gi|218357494|emb|CAQ90133.2| putative diguanylate cyclase [Escherichia fergusonii ATCC 35469]
          Length = 399

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 64/233 (27%), Positives = 108/233 (46%), Gaps = 13/233 (5%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPF--YGLEYILVENLSLVIISITISLLLGYISGSILKE 92
             +F+A ++ +    L  + LT          L   LSL +I +   L+  ++S     +
Sbjct: 168 IRLFVAGLVLMVVACLVTLQLTGIRVAFTSSPLEWWLSLPVI-VLYPLIFAWVSYQTATK 226

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L     R+  +S  D ++G+ N   + + L         Y    +++  DID+FK IND 
Sbjct: 227 LAEHKRRLQVMSARDGMTGVYNRRHWETLLCIEFDHCRRYQRDATLLIIDIDHFKSINDT 286

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH VGD+ I  L+ QL +   +   +GR GG+EFA    G+  + A    + + + +  
Sbjct: 287 WGHDVGDEAILALTRQLQMTLRSSDVIGRFGGDEFAVIMCGTPAENAIAAMSRVHERL-- 344

Query: 206 SQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           S + +S  P + + IS G+A    +       +  AD ALY AK +GRNR   
Sbjct: 345 SHLRLSCAPQVILRISVGVAPLTPQISHYREWLKSADMALYKAKSAGRNRTEV 397


>gi|170739673|ref|YP_001768328.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium sp. 4-46]
 gi|168193947|gb|ACA15894.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium sp. 4-46]
          Length = 1055

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 10/186 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDY 138
           ++   + E   +  RI+ L+  D L+GL N + F ++L            +++++ D+D+
Sbjct: 545 VTHEDITERRRAEERIAFLAYHDVLTGLPNRARFTAALVAALDGRGAQAAIAVLYLDLDH 604

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAN 197
           FK +ND  GHPVGD ++  ++ ++         V RLGG+EFA   +G  +   A+ LA 
Sbjct: 605 FKAVNDTLGHPVGDALLQAVAGRIQSCLRPQDLVARLGGDEFAIVQVGPDQPAGASDLAG 664

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256
            L  I E  +     G  + +  S GIA           ++  AD ALY AK  GR    
Sbjct: 665 RL--IAEVGRPYALMGHHVVVDTSVGIALAPADGTAPDRLMKCADMALYRAKGDGRGAYR 722

Query: 257 CFSDIE 262
            F    
Sbjct: 723 FFEPAM 728


>gi|254239200|ref|ZP_04932523.1| hypothetical protein PACG_05390 [Pseudomonas aeruginosa C3719]
 gi|126171131|gb|EAZ56642.1| hypothetical protein PACG_05390 [Pseudomonas aeruginosa C3719]
          Length = 735

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 10/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
             + +      ++ +++  D L+GL N  AF   LG           +L++++ D+D FK
Sbjct: 555 RDVSDQIAYQQQLLEMAYRDPLTGLGNRKAFDEQLGQALLRAGSGGSELALLYLDLDRFK 614

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND FGH +GD ++  +++++      P    RLGG+EFA     S E     LA  L 
Sbjct: 615 EVNDRFGHDIGDALLRTVAERVRSTLRQPDKAYRLGGDEFAVLLEDSQENNPQRLAERLL 674

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +    I ++      +T S GIA    H      ++  AD A+Y AK+  RN    +
Sbjct: 675 AAL-VQPIALNGERIDFVTPSIGIALYPRHAGDAEGLVRAADSAMYEAKRQ-RNHYCLY 731


>gi|146311599|ref|YP_001176673.1| diguanylate cyclase [Enterobacter sp. 638]
 gi|145318475|gb|ABP60622.1| diguanylate cyclase [Enterobacter sp. 638]
          Length = 368

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 73/269 (27%), Positives = 115/269 (42%), Gaps = 32/269 (11%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITI 78
           + S     F++Y+ +  +  +  ++ +  I   Y  L+    L Y+L   L+L + SI +
Sbjct: 102 IWSVCCFWFIVYWKLPHAWPLYVILILTAITALYYHLSGL--LCYVLPLWLALPVASIML 159

Query: 79  S-------------LLLGYISGSIL--------KELFISYN----RISQLSRIDCLSGLL 113
           +               L  I G IL         E          R+  L+  D L+   
Sbjct: 160 NHGVNIRFATLWLVFTLIIIFGRILLLRWFDEAWERNQQNQMLIARLDALAHQDALTETA 219

Query: 114 NHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           N  A    L    S  +  S++  D+DYFK  ND +GH  GD+ +A ++  L     TP 
Sbjct: 220 NRRAMEGVLENAVSQQKSFSLIMLDVDYFKLYNDTYGHQAGDECLARVAKALKQSVRTPD 279

Query: 171 FVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERC 228
            V  R GGEEF       S + A  +A  ++  +    I  S+   S  +T+S GIA   
Sbjct: 280 DVVSRYGGEEFVVILFDCSTEMAEQVAARIQDTLRAFAIAHSASKVSDCVTVSLGIAGMT 339

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVC 257
               +S +I +AD ALY AK++GR+R   
Sbjct: 340 PGLSVSQLIAQADAALYRAKEAGRDRWAV 368


>gi|115375628|ref|ZP_01462885.1| ggdef family protein [Stigmatella aurantiaca DW4/3-1]
 gi|310823179|ref|YP_003955537.1| FHA/GGDEF domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367404|gb|EAU66382.1| ggdef family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396251|gb|ADO73710.1| FHA/GGDEF domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 303

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 62/178 (34%), Positives = 95/178 (53%), Gaps = 11/178 (6%)

Query: 88  SILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
           SI  +L   Y R I + +  D L+ L N   F  +L         +   LS+V FD+D+F
Sbjct: 119 SIQDQLEEQYQRSIYESATRDGLTRLYNKKYFTETLRKEFAYCLRHRVALSLVMFDVDHF 178

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND +GHP GD V++ ++ ++     T   + R GGEEFA     S+E++A   A   
Sbjct: 179 KKINDVYGHPAGDYVLSRIAQRVGDTVRTEDLLARYGGEEFALMLRESAEEQALSCAERC 238

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
           R+ ++ S   I SG  I ++IS G+A     +      ++  AD+ LY AK++GRNRV
Sbjct: 239 RQAVDRSDF-IFSGTPIKVSISLGVATLLDSDFAQPEDLLASADKYLYRAKRAGRNRV 295


>gi|86749282|ref|YP_485778.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
 gi|86572310|gb|ABD06867.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
          Length = 818

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 91/192 (47%), Gaps = 11/192 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDI 136
            ++   + E   +  +I+ ++  D L+ L N + +   L    E       +++++  D+
Sbjct: 369 LVAVVDVTERRKAEAKIAHMAHHDGLTNLPNRALYQERLQQALEQARGGGGRVAVLCIDL 428

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FK +ND+FGHP+GD+++  ++D+L    G    V RLGG+EFA      +S  EA+ +
Sbjct: 429 DLFKNVNDSFGHPMGDRLLRCVADRLRAQIGGNDLVARLGGDEFAVVLASVASPNEASDV 488

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A  L +++  S      G  + I  S GIA      +    ++  AD ALY AK +G   
Sbjct: 489 AARLIELV--SAPYDMDGLEVVIGASIGIALAPGDGDDCDVLMRSADMALYRAKAAGGGC 546

Query: 255 VVCFSDIENNTC 266
              F    +   
Sbjct: 547 HHFFEKEMDRQA 558


>gi|313681649|ref|YP_004059387.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313154509|gb|ADR33187.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 511

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 8/176 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
           G  +  L     + +Q SR D L+ L N  A    L         +     +   D+D+F
Sbjct: 334 GKKIATLEAELAQATQASREDFLTKLFNKRAIEEYLNLKEAEYERHGHSFCVAMLDLDHF 393

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND +GH  GD V+   +  L +       VGR GGEEF A    +  + A I    +
Sbjct: 394 KAVNDTYGHEAGDAVLIAFAKILKLEARNSDIVGRYGGEEFLAILGDTDLEGAKIFCEKV 453

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           R  +E +   +  G  I ++IS G+A+R +   +  +I  AD+ LY AK+ GRNRV
Sbjct: 454 RAHVEQAHF-MYQGQRIAVSISIGVAQRSNFPSLKALISGADERLYDAKRKGRNRV 508


>gi|262199072|ref|YP_003270281.1| diguanylate cyclase [Haliangium ochraceum DSM 14365]
 gi|262082419|gb|ACY18388.1| diguanylate cyclase [Haliangium ochraceum DSM 14365]
          Length = 364

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 11/174 (6%)

Query: 95  ISYNRISQL-SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNF 146
            ++ R+ Q  +  D L+   N   F   L         + E LS++  D+D FKQIND +
Sbjct: 133 ETFQRLMQESALRDGLTQAYNKRYFSERLDSEVRFAQRHKEPLSLLLMDLDGFKQINDRY 192

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+V+   +  +           R GGEEFA  +   S ++A  +A  LR +    
Sbjct: 193 GHIAGDQVLHAFARAVQRSIRNEDVFARYGGEEFAVLSRSISVEDALSMAERLRALTAEL 252

Query: 207 QINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCF 258
            +   +   I +T+S G+A     +    + ++  AD+ALY AK  GRN+VV F
Sbjct: 253 TVEFQN-RRIGLTVSIGVASVPELQVADCTELLGAADRALYWAKAHGRNQVVLF 305


>gi|289208911|ref|YP_003460977.1| diguanylate cyclase with PAS/PAC and GAF sensors [Thioalkalivibrio
           sp. K90mix]
 gi|288944542|gb|ADC72241.1| diguanylate cyclase with PAS/PAC and GAF sensors [Thioalkalivibrio
           sp. K90mix]
          Length = 896

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 79/190 (41%), Gaps = 15/190 (7%)

Query: 82  LGYISGSILKELFISYN---RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           L  + G+++ E     +   ++  L   D L+GL N    +  L         + E  ++
Sbjct: 705 LLLVLGNLISEALQRNHLEIQLRDLGITDPLTGLYNRRYLMERLREQIEAWRRHGEDFAV 764

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK +ND  GH  GD+V+    D L         V R GGEEF         + 
Sbjct: 765 AILDLDHFKTLNDTHGHLAGDEVLRNFGDLLRRQHRAFDIVARFGGEEFIVVLTRVDHEA 824

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVA 247
           A      L +             S+  T+SAG+A     +P      T+I RAD  LY A
Sbjct: 825 ATTAIERLLEATRELDTRFED-ESLAFTVSAGLAWSDECDPGHLTPETLINRADDRLYRA 883

Query: 248 KKSGRNRVVC 257
           K  GR+R+V 
Sbjct: 884 KAQGRDRLVA 893


>gi|190573536|ref|YP_001971381.1| putative two-component system sensor kinase/response regulator fusion
            protein with GGDEF signalling domain [Stenotrophomonas
            maltophilia K279a]
 gi|190011458|emb|CAQ45076.1| putative two-component system sensor kinase/response regulator fusion
            protein with GGDEF signalling domain [Stenotrophomonas
            maltophilia K279a]
          Length = 1008

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 80/174 (45%), Gaps = 9/174 (5%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + + L        + +R D L+GL N  AF  +L             L +V  DID+FK 
Sbjct: 832  LAERLARQAEAFERQAREDALTGLANRRAFDETLARDFARSQRSGHPLCLVVLDIDHFKD 891

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            +ND   H +GD V+  ++  +           R GGEEFA     +  +EAA L   LR 
Sbjct: 892  VNDRHSHSIGDAVLVQVARLIAAACRDSDLPARTGGEEFALLLNDTRLEEAAQLCARLRG 951

Query: 202  IIENSQINISSGPSIHITISAGIAERCHKEPISTII-YRADQALYVAKKSGRNR 254
            +  +   + +    + +T SAG+ E    +    ++  RAD+ALY AK  GR+R
Sbjct: 952  LFHDHP-DWAGVAGLRVTFSAGLVELDADDRTPALLYQRADRALYRAKSDGRDR 1004


>gi|120555428|ref|YP_959779.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei
           VT8]
 gi|120325277|gb|ABM19592.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei
           VT8]
          Length = 614

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 87/182 (47%), Gaps = 11/182 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           ++ S +     +  ++ +L+  D L+GL N +A        I      +   +++F D+D
Sbjct: 434 LTFSDITARVQAEKQMFRLAHFDKLTGLPNRTALETHLEQAIEQARRQHHHFALMFLDLD 493

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILA 196
            FK +ND  GH  GD ++  ++ +L         VGR GG+EF       +++ +A  +A
Sbjct: 494 KFKPVNDTMGHQAGDDLLRNVARRLKHSIRANDVVGRRGGDEFVIITGPLTNDADAQPIA 553

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
             + +++  ++     G ++HI  S GIA      +    ++  AD+A+Y  K SGRN +
Sbjct: 554 RKIIQVL--NEPFHIQGQTVHIGASVGIALYPDNGQTAELLLATADKAMYSVKTSGRNNL 611

Query: 256 VC 257
             
Sbjct: 612 AF 613


>gi|145219683|ref|YP_001130392.1| diguanylate cyclase [Prosthecochloris vibrioformis DSM 265]
 gi|145205847|gb|ABP36890.1| diguanylate cyclase [Chlorobium phaeovibrioides DSM 265]
          Length = 413

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 12/192 (6%)

Query: 82  LGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
           +  I+ SI+    ++     ++ ++   D  +GL N+  F       +     +   ++I
Sbjct: 214 ITQITQSIMSFCGDIEAKNKKLDEIFITDEKTGLFNYRHFKEHLIIDVERAKRFRTSVTI 273

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              DID+FK+ ND  GH  GD+V+  L+  +     +     R GGEEFA     +    
Sbjct: 274 AMIDIDHFKRYNDANGHIAGDRVLEILAGIIRKQSRSSDIPSRFGGEEFAILFPNTDTHT 333

Query: 192 AAILANDLRKIIENSQINISSG-PSIHITISAGIAERCHKE-PISTIIYRADQALYVAKK 249
           A  +++ LRKII           P+  +T+S GIA          T+I  AD+ALY AK 
Sbjct: 334 AREISDRLRKIISAEPFPHEDDQPTGELTVSIGIATFPDDAPDWYTLINNADRALYEAKA 393

Query: 250 SGRNRVVCFSDI 261
            GRN VV F ++
Sbjct: 394 KGRNNVVAFHEL 405


>gi|260596116|ref|YP_003208687.1| signaling protein [Cronobacter turicensis z3032]
 gi|260215293|emb|CBA27231.1| Uncharacterized signaling protein PA1727 [Cronobacter turicensis
           z3032]
          Length = 690

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 101/234 (43%), Gaps = 13/234 (5%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRI 100
           F  +    ++G+   +    + +  L+++ IS+ +S+    +      +   L  +   +
Sbjct: 198 FSGHTHATHMGVNTRWLALVVTLVTLAILGISLLMSMFDARLQARTSLLASSLAEANKEL 257

Query: 101 SQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +QL+  D L+ L N       L            + +++F D+D FK +ND +GH  GD+
Sbjct: 258 AQLALHDTLTRLPNRILLEDRLDQAISKADREESRFTLMFMDLDGFKAVNDAYGHNTGDR 317

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  ++++L         + R+GG+EF   A      +AA LAN L    +         
Sbjct: 318 LLVAVTERLKEQLKGQFTLARIGGDEFVLLAETDQPNDAAGLANALVHAFDT--PFTIQP 375

Query: 214 PSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             + +TIS GIA   H       +++ AD A+Y  K +GRN    F    N   
Sbjct: 376 YEVVVTISIGIAFYPHDGKNSRELLFNADAAMYHTKHTGRNGYSFFQPSMNTQA 429


>gi|229176090|ref|ZP_04303584.1| GGDEF domain protein [Bacillus cereus MM3]
 gi|228607434|gb|EEK64762.1| GGDEF domain protein [Bacillus cereus MM3]
          Length = 256

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 109/234 (46%), Gaps = 12/234 (5%)

Query: 32  SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI---SGS 88
           SIF S    ++         YI       L   L++++ +V + +  S++ GYI   S +
Sbjct: 21  SIFISRMKLSLAEKWAWLHTYILSILIPALYIWLIQDIRIVGLYLFSSIVTGYITFFSAN 80

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + +    +  + Q + +D L+GL N   F   +  +       N+ L ++  DID+FK 
Sbjct: 81  YVLQSNELFQTMKQYATVDALTGLGNVRQFDLEMNRHISNKRMKNDSLCLLLIDIDHFKH 140

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GHP GD+V+  +   L  +   P    R GGEEFA             +   +R 
Sbjct: 141 VNDTYGHPAGDEVLKQVGRILREISTFPDLTFRKGGEEFALLIPKREIAYGICMGEKIRT 200

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +E     +  G  I IT+S GI+E   +   +  I  AD ALY +K++GRN+V
Sbjct: 201 AVEKHSFQLLDGTKIKITVSVGISEF--ESSPNQFIQAADDALYYSKRNGRNQV 252


>gi|153007631|ref|YP_001368846.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC
           49188]
 gi|151559519|gb|ABS13017.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Ochrobactrum anthropi ATCC 49188]
          Length = 707

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 90/185 (48%), Gaps = 11/185 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFF 134
           L+G +    + E      R++ ++  D L+GL N + F   + S       +E  ++ + 
Sbjct: 251 LIGLV--EDITERREIEERMAHIAMHDSLTGLPNRAYFAHHVESLLKKGGDSEPFALFYL 308

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK INDN GH  GD+++  ++ +L  +  +  F+ RLGG+EFA      +  + A+
Sbjct: 309 DIDHFKNINDNIGHQAGDQLLQEVARRLKQITTSDEFIARLGGDEFAIVYRSGTLAQIAM 368

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
            A+ +    ++    + +     +  S GIA+   H +    ++  AD ALY +K  GR 
Sbjct: 369 FADRILSAFQDPFELVRNSE--FVACSMGIAQAPLHGDNPDVLMRNADLALYASKSGGRR 426

Query: 254 RVVCF 258
               +
Sbjct: 427 TFRFY 431


>gi|189425827|ref|YP_001953004.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
 gi|189422086|gb|ACD96484.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
          Length = 860

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 84/180 (46%), Gaps = 11/180 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            +         ++  +  D L+GL N           I  +   ++ LS++  DID  K 
Sbjct: 413 DITSRKAQEEILTWQAGHDTLTGLYNRYFLENHLTAEIKRMDRQHQTLSLLLIDIDNLKF 472

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILANDLR 200
           +ND FGH  GD+++  ++++L         VGR  G EFA         + A  L N ++
Sbjct: 473 VNDTFGHDFGDRLLVQIAERLKQAACPLSIVGRFLGNEFALVPPLAEGREHAVTLVNRIK 532

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  + S++ +  G  + IT+S G+       E   T++  A+ A+Y AK+ GRN +V ++
Sbjct: 533 Q--QMSELFVMDGAEVVITVSIGVVVFPDDGEDADTLLRNAEAAMYEAKRQGRNTIVWYT 590


>gi|66045722|ref|YP_235563.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63256429|gb|AAY37525.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 703

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 98/216 (45%), Gaps = 13/216 (6%)

Query: 62  EYILVENLSLVIISITISLLLGYI---SGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
            ++LV +LS++ I++   +L  ++   +  +   L  +   ++ L+  D L+GL N +  
Sbjct: 218 RFVLVASLSILGIALFSCILDSHLETRTAVLADSLTQANLELTHLALHDNLTGLPNRALL 277

Query: 119 ISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              +    ++        +++F D+D FK +ND FGH  GD ++  ++ +L         
Sbjct: 278 TERIDQAMKRATETGGCFALMFMDLDGFKPVNDAFGHHTGDLLLRQVALRLRNSLHRRDT 337

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF         ++A  +A   R++ E     I     + I++S GI     + 
Sbjct: 338 LARVGGDEFVLLVELQHPEDALAVAR--RQVNEVGNPFIIGEHQLQISLSIGICVYPGNG 395

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
                ++  AD A+Y  K +G+N    F    N+  
Sbjct: 396 STQHELLINADAAMYHTKAAGKNGYSFFDVSMNSNA 431


>gi|163849321|ref|YP_001637365.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222527315|ref|YP_002571786.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus sp. Y-400-fl]
 gi|163670610|gb|ABY36976.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222451194|gb|ACM55460.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus sp. Y-400-fl]
          Length = 722

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 62/189 (32%), Positives = 92/189 (48%), Gaps = 13/189 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEK 128
           I+ + L+  IS   ++  +     + +    D L+GLLNH A    L           + 
Sbjct: 391 ISPADLVAAISARAMRARY-----LQRFLIRDSLTGLLNHQAVEEELSHEFARAERLQQP 445

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LSI   DID+FK++ND++GH +GD+V+   +  L         +GR GGEEF  A   +S
Sbjct: 446 LSIAIIDIDHFKRVNDSYGHLIGDQVLRSFARLLQQRLRKSDLIGRHGGEEFLVALPNTS 505

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
             EA  L + +R      +    +G    +T SAGIA   H      ++  AD ALY AK
Sbjct: 506 LVEARTLIDTIRTSFAALRHYGPAG-EFTVTFSAGIAGYPHHRSQLGVMQAADAALYQAK 564

Query: 249 KSGRNRVVC 257
            +GRNR+V 
Sbjct: 565 HAGRNRIVV 573


>gi|330971256|gb|EGH71322.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 703

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 98/216 (45%), Gaps = 13/216 (6%)

Query: 62  EYILVENLSLVIISITISLLLGYI---SGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
            ++LV +LS++ I++   +L  ++   +  +   L  +   ++ L+  D L+GL N +  
Sbjct: 218 RFVLVASLSILGIALFSCILDSHLETRTAVLADSLTQANLELTHLALHDNLTGLPNRALL 277

Query: 119 ISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              +    ++        +++F D+D FK +ND FGH  GD ++  ++ +L         
Sbjct: 278 TERIDQAMKRATETGGCFALMFMDLDGFKPVNDAFGHHTGDLLLRQVALRLRNSLHRRDT 337

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF         ++A  +A   R++ E     I     + I++S GI     + 
Sbjct: 338 LARVGGDEFVLLVELQHPEDALAVAR--RQVNEVGNPFIIGEHQLQISLSIGICVYPGNG 395

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
                ++  AD A+Y  K +G+N    F    N+  
Sbjct: 396 STQHELLINADAAMYHTKAAGKNGYSFFDVSMNSNA 431


>gi|313497514|gb|ADR58880.1| Diguanylate cyclase [Pseudomonas putida BIRD-1]
          Length = 357

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 71/266 (26%), Positives = 117/266 (43%), Gaps = 14/266 (5%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFS----IFIATVIFIANIFLFYIGLTPFY 59
           SL         H   L S +    M   ++       +F   +  +A +    + L P  
Sbjct: 80  SLMGGFWTAAMHFNPLPSVTVLAMMTMNNVAAGGKRMVFRGVLAQLAGMLAAILLLGPGL 139

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
            L    ++  + + +     L LG++   +  +L     R+S LS  D L+GL NH A+ 
Sbjct: 140 QLTATPLQVYACLPMLALYPLALGWVCYQLAIKLGDHKRRLSALSLTDSLTGLFNHGAWK 199

Query: 120 SSLG------SYNEKLSIV-FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L          +  +++   DID+FK IND FGH VGD V+  LS +L          
Sbjct: 200 DLLQLKFQACKQQQGHAVIALIDIDHFKTINDTFGHVVGDCVLRQLSAELRRSLREGDQA 259

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-E 231
           GR GG+EF      +SE +A      LR+ + + +      P + I++S G++      E
Sbjct: 260 GRYGGDEFCVILPETSEAQACQAMERLRERVSSYR--NPQLPHLRISLSIGLSPFEANLE 317

Query: 232 PISTIIYRADQALYVAKKSGRNRVVC 257
                + +AD+ALY+AK +GR++V  
Sbjct: 318 SPEHWLEQADKALYIAKHAGRDQVNF 343


>gi|304312815|ref|YP_003812413.1| Response regulator receiver [gamma proteobacterium HdN1]
 gi|301798548|emb|CBL46778.1| Response regulator receiver [gamma proteobacterium HdN1]
          Length = 726

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 11/182 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
              +     + + I      D L+GL N + F       IS      +K+  +  D+D F
Sbjct: 275 ARDISTRKQAESMIRFQVYHDQLTGLPNRTLFRDRCQSAISQARRQQKKVVAITLDLDRF 334

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND FGH  GD+++  +S +L         + R GG+EF      + + +E+ ++A  
Sbjct: 335 KAINDAFGHTAGDQLLQNVSRRLQGCLRESDTLARFGGDEFVILLPQTQTVEESNVVAEK 394

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +R+ +        +  ++ +T S G+A    H + + T++  AD A+  AK  G+NR   
Sbjct: 395 IRQAL--LTDFAVNHQAVSLTASIGVALFPDHGDSVDTLLRNADIAMNHAKTLGKNRFQY 452

Query: 258 FS 259
           F 
Sbjct: 453 FE 454


>gi|260777776|ref|ZP_05886669.1| ammonium transporter [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605789|gb|EEX32074.1| ammonium transporter [Vibrio coralliilyticus ATCC BAA-450]
          Length = 635

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 10/193 (5%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS 130
           +S+   Y+  S  +        + +++ +D L+G+ N   +  ++          N+  +
Sbjct: 439 LSMTYNYLLDSTNRHFREKERELLKMASLDPLTGVPNRRVYEQAIENTVKKSHEENKDFA 498

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSE 189
           ++  D+DYFKQ ND++GH +GD  +  +   L  V       + R+GGEEFA     ++ 
Sbjct: 499 LLILDLDYFKQYNDHYGHQLGDYCLQNVCQALSSVTRRQHDILARIGGEEFAFILRDTNL 558

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVA 247
            +A  +A  LRK +E  +I         +T+S G A    +  +  + +   AD AL+ A
Sbjct: 559 HDARRIAELLRKEVEMLEIPHVHSECDFVTVSIGGAVWDMRINLPHTVLFDEADAALFKA 618

Query: 248 KKSGRNRVVCFSD 260
           K+ GRN+VV FSD
Sbjct: 619 KELGRNQVVFFSD 631


>gi|78062390|ref|YP_372298.1| diguanylate cyclase [Burkholderia sp. 383]
 gi|77970275|gb|ABB11654.1| diguanylate cyclase (GGDEF domain) [Burkholderia sp. 383]
          Length = 516

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 9/185 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFF 134
             I    +     +   I  L+R D L+GL N     + L     +        L++++ 
Sbjct: 321 AVIIVEDVTARRQTEQHIRHLARHDALTGLPNRHELHAQLKRMLARRPRAPDAALAVMYL 380

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND FGH  GD V+  ++ +L           R+GG+EF  A   ++    ++
Sbjct: 381 DLDGFKAINDRFGHQAGDDVLTQVAVRLGKTLSPGELAARIGGDEFVVAIDDTTMHACSL 440

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           LA  + + I ++   +S G ++++ IS GIA          +I +AD ALY AK +G+  
Sbjct: 441 LAARIIRQI-SAPYTLSIGETVNLGISIGIALDDGHGSPDELIRQADSALYDAKSAGKGI 499

Query: 255 VVCFS 259
              +S
Sbjct: 500 YRFYS 504


>gi|77460307|ref|YP_349814.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas fluorescens Pf0-1]
 gi|77384310|gb|ABA75823.1| putative GGDEF/EAL domain signalling-related membrane protein
           [Pseudomonas fluorescens Pf0-1]
          Length = 820

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 56/211 (26%), Positives = 94/211 (44%), Gaps = 18/211 (8%)

Query: 65  LVENLSLVIISITISLL----LGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNH 115
           L++ L    +S+T+        G +SG++L    ++  R     +S  +  D L+GL N 
Sbjct: 326 LIQRLDGSTVSVTLVGAPIRNAGKVSGAVLVLHDMTQERQYIANLSWQATHDALTGLANR 385

Query: 116 SAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
             F   L      L       +++F D+D FK +ND  GH  GD+++  +   L      
Sbjct: 386 REFEYRLEQALHNLTRQAGRHALMFLDLDQFKLVNDTCGHAAGDELLRHICALLQSGLRE 445

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
              + RLGG+EF       + + A  +A  LR+ ++N    +  G     T+S G+    
Sbjct: 446 GDTLARLGGDEFGILLENCAPEAAEKIAESLRQTVQNLHF-VWKGRPFLTTVSIGLVHVA 504

Query: 229 HK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
                +   +  AD A Y+AK+ GRNRV  +
Sbjct: 505 QNPTTLEASLRAADMACYMAKEKGRNRVQVY 535


>gi|74317060|ref|YP_314800.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Thiobacillus denitrificans ATCC 25259]
 gi|74056555|gb|AAZ96995.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC and GAF sensor(s) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 1059

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 14/186 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQIND 144
           + E   + +++ QL+  D L+GL N       L       + +  +++  D+D FK +ND
Sbjct: 603 VTERKAAEHKVHQLAFYDPLTGLPNRELLGDRLQHAMQVRHGQVGALLLIDLDNFKTLND 662

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA------LGSSEQEAAILAND 198
             GH +GD ++  ++ +L         + R+GG+EF           G +   A  +   
Sbjct: 663 TLGHAMGDLLLQQIAQRLQTCLRKGDTLARVGGDEFVIVLEGLSASPGDAGSLATRVGEK 722

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           +          ++     H T S GI     +   +  +  RAD A+Y AK  GRN +  
Sbjct: 723 ILASFAR-PFQLADYVH-HCTASIGITLFNDRPTTLDELRKRADLAMYQAKAHGRNALRF 780

Query: 258 FSDIEN 263
           F     
Sbjct: 781 FDPAMQ 786


>gi|88858513|ref|ZP_01133155.1| putative orphan protein; putative sensory-box domain
           [Pseudoalteromonas tunicata D2]
 gi|88820130|gb|EAR29943.1| putative orphan protein; putative sensory-box domain
           [Pseudoalteromonas tunicata D2]
          Length = 834

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 95/202 (47%), Gaps = 13/202 (6%)

Query: 75  SITISLLLGYISGSI--LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------- 125
           SI ++ +   ++ SI  + E   +  ++  L+  D L+ L N   F   L          
Sbjct: 374 SIVVNKVTVGVTASIDNIHERKQAELQLHHLAHHDTLTKLHNRYYFDLKLNQLCKDTEDS 433

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           N + ++++ D+D+FK IND+ GH  GD V+  ++            + R+GG+EFA    
Sbjct: 434 NAQHALIYIDLDHFKIINDSQGHHQGDIVLKQIAKTFQKNLHEGSTICRIGGDEFAVILE 493

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQAL 244
                EA ++A  L   +EN Q     G    I+ S G+     +    S  + ++D AL
Sbjct: 494 NVELLEAHLIAEGLCHAVENYQFQAP-GQQYSISCSIGLTLITANNSDASECLKQSDIAL 552

Query: 245 YVAKKSGRNRVVCFS--DIENN 264
           YVAK  GRN V C++  D ++N
Sbjct: 553 YVAKNRGRNLVHCYTYEDADSN 574


>gi|238798074|ref|ZP_04641562.1| hypothetical protein ymoll0001_17400 [Yersinia mollaretii ATCC
           43969]
 gi|238718054|gb|EEQ09882.1| hypothetical protein ymoll0001_17400 [Yersinia mollaretii ATCC
           43969]
          Length = 467

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 57/186 (30%), Positives = 84/186 (45%), Gaps = 11/186 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVF 133
           ++ Y S   + EL  S + +  LS+ D L+G+ N   F        +K       LS++ 
Sbjct: 276 VIWYGSFFDITELKQSESILKALSQTDVLTGVANRRHFDDLYQRIWQKNRIEGGTLSVLM 335

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEA 192
            D D FK  ND +GH +GD  +  + + L          + R GGEEF      S+  +A
Sbjct: 336 IDFDNFKSFNDLYGHAMGDVCLKSIVETLSKSIRGGSDILARYGGEEFIVLLAPSTPTDA 395

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKK 249
             +A  +R  IE   I     P   +TIS G A     +     + +   AD+ALY AK 
Sbjct: 396 KTIAERMRHSIEELDIPHGMSPHGRVTISIGAASISAPDEHIAATDLSGAADKALYRAKT 455

Query: 250 SGRNRV 255
           SG+NRV
Sbjct: 456 SGKNRV 461


>gi|206601961|gb|EDZ38443.1| Diguanylate cyclase [Leptospirillum sp. Group II '5-way CG']
          Length = 386

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 11/194 (5%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEK 128
           + +SL LG       +EL  + N +  L+  D L+ L N                 +   
Sbjct: 181 LAVSLGLGLNRYRERQELEAAKNEVEILAFHDALTHLPNRRLLEDSLEGAVERAAHHQVT 240

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L++   D+D FK IND  GH  GD+++   ++++        F+ RLGG+EF     G  
Sbjct: 241 LAVCMLDLDGFKPINDTHGHEGGDQLLLETAERIKGCLRQTDFLARLGGDEFVLLLEGIR 300

Query: 189 EQEAAI-LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALY 245
           ++E+   +   +   I+ S + + +G  + + +SAG+      +      ++  ADQALY
Sbjct: 301 DEESLKGILEKIGAAIQ-SPVRLENGAEVTVNLSAGVCLFPRDQGNNPDVLLRLADQALY 359

Query: 246 VAKKSGRNRVVCFS 259
            +K + +NR   ++
Sbjct: 360 ESKSNKQNRTHFWT 373


>gi|187920568|ref|YP_001889600.1| diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans
           PsJN]
 gi|187719006|gb|ACD20229.1| diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans
           PsJN]
          Length = 689

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 102/217 (47%), Gaps = 16/217 (7%)

Query: 63  YILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           ++    + L    +T++L+L         ++  +     +I +L+ +D L+GL N S   
Sbjct: 215 WLATSVILLTFAILTVTLMLSRFDARNALLIGAVSRLNGQIVRLATLDTLTGLPNRSTLT 274

Query: 120 SSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             +              +I+F D+D FK IND+ GH VGD+V+   + +L+        V
Sbjct: 275 DRIERAILSARRQRTLFAILFMDLDGFKTINDSLGHSVGDQVLTAFAQRLLQCVRETDTV 334

Query: 173 GRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINI-SSGPSIHITISAGIAERCHK 230
            RLGG+EF   A    S ++A+ LA  +   +E  ++ + +    + +  S GIA   H 
Sbjct: 335 ARLGGDEFVVLAENLGSREDASALAEGV---LERMRLGVWTDSQPLQVMPSIGIALYPHD 391

Query: 231 -EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            + + T++  AD A+Y AK++GR+    F    N   
Sbjct: 392 GDSVETLLKHADAAMYEAKRAGRSTYRFFERSMNEAA 428


>gi|88860392|ref|ZP_01135030.1| cyclic nucleotide phosphodiesterase, putative [Pseudoalteromonas
           tunicata D2]
 gi|88817590|gb|EAR27407.1| cyclic nucleotide phosphodiesterase, putative [Pseudoalteromonas
           tunicata D2]
          Length = 618

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 98/205 (47%), Gaps = 11/205 (5%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQL-SRIDCLSGLLNHSAFI 119
           L  I  +N  L+ +S  +SL L       L    +S  +I+ L +  D L+ + N    +
Sbjct: 415 LNEISDKNTWLIWLSSIVSLCLVITVVLALYARKVS--KINHLRATTDELTQIANRRHIL 472

Query: 120 SSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           + L           + L I   DIDYFK+INDNFGH  GD V+  ++            +
Sbjct: 473 NCLNRLIKGANKTKQPLCIAMLDIDYFKKINDNFGHLAGDLVLVEVAQVAQSCLRKHDLM 532

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           GRLGGEEF      +++Q+A  +   +R  +    I+      + ++ S GI+      E
Sbjct: 533 GRLGGEEFLFVLPNTTQQQARTVCESIRNALHTIAIDNDESGHLTVSGSFGISILSKADE 592

Query: 232 PISTIIYRADQALYVAKKSGRNRVV 256
            + ++I RAD ALY AK +GR+++ 
Sbjct: 593 KVESLIQRADTALYQAKNNGRDQIC 617


>gi|114561948|ref|YP_749461.1| diguanylate cyclase/phosphodiesterase [Shewanella frigidimarina
           NCIMB 400]
 gi|114333241|gb|ABI70623.1| diguanylate cyclase/phosphodiesterase [Shewanella frigidimarina
           NCIMB 400]
          Length = 681

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 86/174 (49%), Gaps = 8/174 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFG 147
           EL  + +++ + +  D L+ L N   F   L S  +      +++F D+D FK+IND+ G
Sbjct: 240 ELENANSQLHEYAYQDGLTLLPNRRYFYEKLQSLIDTDHMVFALIFIDLDGFKEINDSLG 299

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206
           H  GD+++  ++ +L         V RLGG+EF       S  + AA +A  ++  +   
Sbjct: 300 HEYGDRLLHQVAKRLRGCVRDHDTVARLGGDEFTLIIEDVSDLEHAASIAEKVKSSL--M 357

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           Q        +++T S G+       + +  ++  ADQA+Y++K  GRNR   FS
Sbjct: 358 QCISIEEVQVNVTGSIGLTFYPADGQNVEALVKHADQAMYLSKSKGRNRYEFFS 411


>gi|332296135|ref|YP_004438058.1| diguanylate cyclase with PAS/PAC sensor [Thermodesulfobium
           narugense DSM 14796]
 gi|332179238|gb|AEE14927.1| diguanylate cyclase with PAS/PAC sensor [Thermodesulfobium
           narugense DSM 14796]
          Length = 578

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 11/184 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136
            +    + E  +  N+++ L+  D L+GL N + F       IS        L ++F D+
Sbjct: 392 LLIAKNVTEKRLMENKLNYLAFHDHLTGLSNRTLFSDRVQYEISRAKRNRTFLGVMFLDL 451

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FK +ND  GH +GD ++  +S +L         + R+GG+EFA        + E   L
Sbjct: 452 DRFKDVNDTLGHKIGDSLLQHVSAKLQETIRETDILARMGGDEFAILVPDLKDKNEIKPL 511

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           A  + K+ EN      +  S  + IS GI+   +       ++  AD A+Y AK SG N+
Sbjct: 512 AKRILKLFEN--PFTVNNNSFKLGISIGISIYPYDAKNYEELLTNADTAMYSAKNSGGNK 569

Query: 255 VVCF 258
            + +
Sbjct: 570 FIFY 573


>gi|307721317|ref|YP_003892457.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
 gi|306979410|gb|ADN09445.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
          Length = 307

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 88/176 (50%), Gaps = 7/176 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYF 139
           +  ++ +L      +   S +D L+ + N  A  + L           +L ++  DID F
Sbjct: 125 ANQVIAQLSAQVKELESSSNLDALTKIFNRRALDTYLKNLCDKKELKHELHVLLLDIDDF 184

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND +GH  GDK++ F+++ L         V R GGEEF              +A+ +
Sbjct: 185 KKINDKYGHIAGDKILIFVANMLRKALRDGDKVFRYGGEEFLIVLNRIDVNTCQEIADRI 244

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            K++ ++Q+    G  I++TIS G      ++    +I RAD+ALY +KKSG+N++
Sbjct: 245 LKLVSSNQLFYK-GEPINVTISIGSTLFYPEDTPEALINRADKALYKSKKSGKNQI 299


>gi|253996028|ref|YP_003048092.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera mobilis JLW8]
 gi|253982707|gb|ACT47565.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera mobilis JLW8]
          Length = 836

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 80/189 (42%), Gaps = 12/189 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           + + E   S  +I  L+  D L+ L N    +  +           +K +++F D+D+FK
Sbjct: 392 TDISESKASSEQIEHLAFYDPLTNLPNRLLLLDRVRQAFSSSSRTGKKGALLFVDLDHFK 451

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ--EAAILAND 198
            +ND  GH  GD ++   +++L         V R GG+EF            EAA +A  
Sbjct: 452 VLNDTLGHSTGDLLLKLQAERLSHCVRAGDTVARFGGDEFVVVLEDLDRNATEAAAIAEQ 511

Query: 199 L-RKIIENSQINISSG-PSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
           +  KI+         G      T S GI      E  I  ++ +AD ++Y AKK+GRN +
Sbjct: 512 IGNKILSTLHEPCQFGTHQYQSTSSIGITLFSGDEHEIEDLLKQADISMYQAKKAGRNTL 571

Query: 256 VCFSDIENN 264
             F      
Sbjct: 572 RFFDPAMQE 580


>gi|170768708|ref|ZP_02903161.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia albertii TW07627]
 gi|170122256|gb|EDS91187.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia albertii TW07627]
          Length = 652

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 92/188 (48%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    + +        K+ +V+ D+D FK
Sbjct: 210 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDNAIKQADGNKVGVVYLDLDNFK 269

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           ++ND +GH  GD+++  +S  ++        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 270 KVNDAYGHVFGDQLLREVSLAILSCLEQDQVLARLGGDEFLILAPNTSQSALEAMASRIL 329

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G S+ I++S       H    + II  AD A+Y AK+ GR +  
Sbjct: 330 TRLRQPFSIGLIEVYTGCSVGISLS-----PQHGMDSAAIIRHADTAMYTAKEGGRGQFC 384

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 385 VFSPEMNQ 392


>gi|326317066|ref|YP_004234738.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373902|gb|ADX46171.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 247

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 9/167 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGD 152
           + +LS  D L+GL N   F + L    ++++       ++  DID FK++ND  GH  GD
Sbjct: 41  LCELSLKDPLTGLANRRHFRTVLEREIDRVTRAGEAALLLMLDIDNFKRVNDTHGHMAGD 100

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L         + R GGEEFA            ++A  +R+ +E + + IS 
Sbjct: 101 IVLQSIARTLSRCVRPMDTLSRYGGEEFAVVLPACQAGFGKVVAERIRRAVERTPVRISP 160

Query: 213 GPSIHITISAGIAERCHKEPISTII--YRADQALYVAKKSGRNRVVC 257
              +++T+S G A        +T++   RAD  LY AK +GRNRV  
Sbjct: 161 TVELNVTVSIGGAFALQWIRSTTLLWTERADSQLYKAKLAGRNRVSI 207


>gi|145589348|ref|YP_001155945.1| diguanylate cyclase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047754|gb|ABP34381.1| diguanylate cyclase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 517

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 57/203 (28%), Positives = 94/203 (46%), Gaps = 11/203 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
             +N S  +++  +S+L+ +I    L   +         +  D L+ L N + F   L  
Sbjct: 304 WYKNGSGGLVASALSILVLFIGTYFLLTTYRRNAENEYHAHHDVLTKLPNRTLFSDRLSN 363

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                    E L+I+F D+D  K IND  GH  GD V+  +S ++         V R+GG
Sbjct: 364 AIAACKRNQEALAILFIDLDNLKTINDIHGHTAGDLVLTEVSARMRQCLRDSDTVARIGG 423

Query: 178 EEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPIST 235
           +EF     G  +E+ A +LA  +R  +    I++  G +I  + S G+A    H    + 
Sbjct: 424 DEFVVLLPGVGTEETAVMLAEKIRTAL-ILPIDL-GGSAITTSASIGVALYPAHGLNDAD 481

Query: 236 IIYRADQALYVAKKSGRNRVVCF 258
           ++  AD A+Y AK SGRN +  +
Sbjct: 482 LMNSADVAMYEAKSSGRNAIKVY 504


>gi|110632952|ref|YP_673160.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Mesorhizobium sp. BNC1]
 gi|110283936|gb|ABG61995.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Chelativorans sp. BNC1]
          Length = 730

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 98/230 (42%), Gaps = 12/230 (5%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
           +    ++       + L+ +L   L  +     I+L LG         L  S  R   L+
Sbjct: 245 VLGYLIWEADRPGLHLLKQVLPACLIALFAVGGIALFLGRKLRRASLALHASERRARHLA 304

Query: 105 RIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAF 157
             D L+ L N + F   L    + +       +++F D+D FK +ND  GH  GD+++  
Sbjct: 305 SHDVLTRLPNRAFFEKKLDRVIDTVQAGHGEAALLFLDLDRFKNVNDTLGHRAGDELVRE 364

Query: 158 LSDQLVVVFGTPMFVGRLGGEEF--AAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
            + +L    G    V R+GG+EF         + + A  L+  L + ++     + SG  
Sbjct: 365 TAVRLSTAIGNAGVVARIGGDEFGMVILRRSGAREAAIELSERLLQALKV--PFVISGEP 422

Query: 216 IHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +H+ +S G+A           ++ +AD ALY AKK GR     FS+   +
Sbjct: 423 VHVGVSIGVALAPEAGSERQDLLRKADIALYDAKKRGRGCYQIFSEAMGD 472


>gi|310826216|ref|YP_003958573.1| sensory box sensor/GGDEF/EAL domain protein [Eubacterium limosum
           KIST612]
 gi|308737950|gb|ADO35610.1| sensory box sensor/GGDEF/EAL domain protein [Eubacterium limosum
           KIST612]
          Length = 676

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 10/167 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDK 153
            + +LS+ D L+GL N +  +  LG    +      +++  DID+FK++ND +GH  GD 
Sbjct: 514 ELRRLSQTDPLTGLYNRATLVKRLGRVLRRGTAASHALIILDIDHFKELNDTYGHQFGDT 573

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  ++  L     +  F GRLGG+EF     G S  + AI+   L   +   ++     
Sbjct: 574 VLIEVAAALKDCLRSNDFSGRLGGDEFMIFMRGLS--DTAIIRERLN--VLRDRLYNLDL 629

Query: 214 PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +  +TIS GIA    H +    +  RAD ALY AK+ GR+++V + 
Sbjct: 630 TNTPLTISIGIAFFPAHGKSFQELYDRADTALYEAKRQGRDQIVFYE 676


>gi|152984917|ref|YP_001347333.1| hypothetical protein PSPA7_1952 [Pseudomonas aeruginosa PA7]
 gi|150960075|gb|ABR82100.1| hypothetical protein PSPA7_1952 [Pseudomonas aeruginosa PA7]
          Length = 306

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 8/163 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q +  D L+G  N  A   +LG   E        LS++  DID+FK++ND++GH VGD+ 
Sbjct: 144 QTALRDALTGTGNRIAMDQALGRELELARRNLQPLSVLMLDIDHFKRVNDHYGHAVGDEA 203

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +++ +         V R GGEEF      +  Q A ++   LR+ +E       +G 
Sbjct: 204 LKAVAETIKDHLRNVDMVFRFGGEEFLVLLSSTPLQAACMVGERLRQAVEELDYRH-AGE 262

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++ ++IS G A+    E    ++ R D+ALY AK+ GRNR+ C
Sbjct: 263 TLKLSISLGCADLRPGEGSDDLLRRVDEALYEAKRDGRNRLRC 305


>gi|89092665|ref|ZP_01165618.1| regulatory component of sensory transduction system
           [Oceanospirillum sp. MED92]
 gi|89083177|gb|EAR62396.1| regulatory component of sensory transduction system
           [Oceanospirillum sp. MED92]
          Length = 885

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 11/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             + +      +I   +  D L+ L N    +  L            +++++F D+D FK
Sbjct: 441 QDVTKQKAQEEKILHQAHFDGLTELPNRFLAMHRLETMMHEAKRNQHQIAVLFLDMDDFK 500

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
           ++ND  GH +GDK++   + +L         +GRLGG+EF          ++A  +A +L
Sbjct: 501 KVNDTLGHDMGDKILVEAAKRLQGSVRDSDTIGRLGGDEFIVLINHLERPEQALPIAQNL 560

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +   +S      G  I +T+S GIA         S ++  AD A+Y +K +GRN    +
Sbjct: 561 LQQFRSSL--TIDGRDILLTMSIGIALYPGDGTTPSELLRNADSAMYHSKAAGRNSFHFY 618

Query: 259 SDIEN 263
           +   N
Sbjct: 619 TQEMN 623


>gi|313202386|ref|YP_004041044.1| PAS/PAC sensor-containing diguanylate cyclase [Methylovorus sp.
           MP688]
 gi|312441702|gb|ADQ85808.1| diguanylate cyclase with PAS/PAC sensor [Methylovorus sp. MP688]
          Length = 323

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 98/213 (46%), Gaps = 18/213 (8%)

Query: 62  EYILVENLSLVIISI--TISLLLGYI-----SGSILKELFISYNRISQLSRIDCLSGLLN 114
           EYI + ++  V+ +    +  L+G++          ++L      + +LS  D L+ + N
Sbjct: 108 EYIWIRDVVHVLRNADGEVEALIGFMFDISERKKTEEKLLQLQKELEELSFQDGLTRVAN 167

Query: 115 HSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-F 166
              F S       +    ++ LS++  DIDYFKQ ND++GH  GD  +  +++ L     
Sbjct: 168 RRMFDSIIQVEWTNARRNSQPLSLIMLDIDYFKQYNDHYGHIQGDDCLKQVAEILSSAGT 227

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS---GPSIHITISAG 223
               F  R GGEEF      +    A  +A   RK+I  +QI  +    GP + I++  G
Sbjct: 228 RANDFFARFGGEEFVLVLPQTDSDAAKKIAERCRKLIFKAQIPHAKSLIGPVLTISVGVG 287

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                +++     I   DQ LY AK+ GRN ++
Sbjct: 288 TVIPGYQDESVDFINSVDQRLYQAKQLGRNCII 320


>gi|317053536|ref|YP_004118670.1| diguanylate cyclase [Pantoea sp. At-9b]
 gi|316952641|gb|ADU72114.1| diguanylate cyclase [Pantoea sp. At-9b]
          Length = 571

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 65/182 (35%), Positives = 87/182 (47%), Gaps = 9/182 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFF---DIDY 138
           I    L+E      R+  L+  D L+GL N  AF     SL S +    I+F    D+DY
Sbjct: 386 ILKIRLEERDELTRRLQYLAETDELTGLFNRRAFDQTGESLLSGHRPGVIIFLIIMDLDY 445

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND +GHPVGD V+   +D +           R+GGEEFA    G+    A  LA  
Sbjct: 446 FKLINDRYGHPVGDSVLTAAADVIRTHITEGDMAARIGGEEFAIVVSGTESTSALRLAES 505

Query: 199 LRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++K + N       G  I+IT S GIA   +         +I  AD ALY AK+SGR+ +
Sbjct: 506 IQKGLHNRDSRAPDGDRINITASFGIAGTKQDSSNTSWRQLIADADSALYEAKRSGRDCI 565

Query: 256 VC 257
             
Sbjct: 566 RV 567


>gi|207742852|ref|YP_002259244.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           IPO1609]
 gi|206594246|emb|CAQ61173.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           IPO1609]
          Length = 532

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 8/164 (4%)

Query: 99  RISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R++  +  D L+GL N       +  L   ++  S V  D+D+FK+IND  GH VGD+V+
Sbjct: 351 RLNHEALTDPLTGLYNRRGVADALRLLAGRHQPFSAVTLDVDHFKRINDRDGHDVGDQVL 410

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  +          GR+GGEEF      ++ + A   A  LR+ +E           
Sbjct: 411 KHIAALIREQARHDDITGRIGGEEFILLLPDATPEGAFKTAERLRRAVEARPNPTGQ--- 467

Query: 216 IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             +T+S G+A+     E +  ++  +D ALY AK+SGRNR V +
Sbjct: 468 -VVTVSLGVADYPGASEEVDAVLKLSDLALYQAKRSGRNRTVLY 510


>gi|167031847|ref|YP_001667078.1| diguanylate cyclase [Pseudomonas putida GB-1]
 gi|166858335|gb|ABY96742.1| diguanylate cyclase [Pseudomonas putida GB-1]
          Length = 496

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 10/170 (5%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
             +   ++ L+  D L+GL N            +      + L+++  D+D+FK  N   
Sbjct: 324 HEAEEGLATLAATDSLTGLANRRRLDLVLRQEWARAQRNRKPLAVLMVDVDHFKAFNQRH 383

Query: 147 GHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           GH  GD  +  ++  +      P     R GGEEF      +    A +LA  +R  +E 
Sbjct: 384 GHAGGDHALREVAKTIEACIRRPADLAARYGGEEFQVVLPETDLAGAQLLAERIRASVEA 443

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                    +  +T+S GI     +  +S ++  AD+ALY AK  GRNRV
Sbjct: 444 LAPFADDAHA--VTVSIGIGLSGTQHDLSRVLGAADEALYRAKAKGRNRV 491


>gi|312962173|ref|ZP_07776665.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas
           fluorescens WH6]
 gi|311283510|gb|EFQ62099.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas
           fluorescens WH6]
          Length = 819

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 14/189 (7%)

Query: 83  GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           G ISG++L    ++  R     +S  +  D L+GL N   F   L           E+ +
Sbjct: 348 GKISGAVLVLHDMTQERQYIANLSWQATHDALTGLANRREFEYRLEQVLNPARHQGERHA 407

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F D+D FK +ND  GH  GD+++  +   L         + RLGG+EF          
Sbjct: 408 LMFLDLDQFKLVNDTCGHAAGDELLRHICALLQSDLREGDTLARLGGDEFGILLENCPAP 467

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
            A  +A  LR  +++    +  G     T+S G+    +    + + +  AD A Y+AK+
Sbjct: 468 TAEKIAESLRHTVQSLHF-VWKGRPFMTTVSIGLVHISNTPTTLESSLRAADMACYMAKE 526

Query: 250 SGRNRVVCF 258
            GRNRV  +
Sbjct: 527 KGRNRVQVY 535


>gi|298507295|gb|ADI86018.1| diguanylate cyclase, FeoA domain-containing [Geobacter
           sulfurreducens KN400]
          Length = 249

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 94/210 (44%), Gaps = 8/210 (3%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L      + +    + L + +  I++     +   ++ +   Y  +   +  D L+G  N
Sbjct: 39  LIDLLQSDPLAARKVVLGVDNFRIAVHAELAAQIRVRPIKSYYEAVKVQAHYDNLTGCFN 98

Query: 115 HSAFI-----SSL--GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
             A         L         S++  DID+FK+IND +GH  GD+V+   +D L     
Sbjct: 99  RHALEGIVRGEVLKYAEKRVPFSLLLADIDHFKKINDTYGHQEGDRVLKRFADLLRHGLR 158

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
               + R GGEEF     G+  +EA+++A  LR++IE S         + +T+S G    
Sbjct: 159 RSDVLCRWGGEEFLILLRGTLVEEASLIAERLRRMIEESIFPPFPTEGL-VTVSMGGVGM 217

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                ++ +   AD ALY +K++GRNRV  
Sbjct: 218 PPGTDVNRLFAEADSALYTSKRAGRNRVTV 247


>gi|316932923|ref|YP_004107905.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
 gi|315600637|gb|ADU43172.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
          Length = 357

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 66/275 (24%), Positives = 112/275 (40%), Gaps = 36/275 (13%)

Query: 19  LESFSPHTFM--IYFSIFFSIFIATVI------------FIANIFLFYIGLTPF-YGLEY 63
           +  F+P  F      +  F IF   ++              A +    I +T   +   +
Sbjct: 83  IGQFAPEPFAGRYMMAALFVIFAGALVSALSWGATKIMTVTATVLYMLITVTGLRWPPAW 142

Query: 64  ILVENLSLVIISITISL--------------LLGYISGSILKELFISYNRISQLSRIDCL 109
             ++ + L I++  I+L               +      + ++L  +   + +LS  D L
Sbjct: 143 TNIDLVGLCIVTCVIALRARERKDAQIAELEAIRRSDARLKRDLRRANAALERLSATDAL 202

Query: 110 SGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           +G+ N       +      +      S++  D+D+FK  ND+ GH  GD+ +  +   + 
Sbjct: 203 TGVFNRRYLDELIEQETASIVPSLGQSVLMIDVDHFKLFNDHGGHAAGDRCLQQIVTAVR 262

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISA 222
               +   V R GGEEFA    G  + E    A  L   ++  +I     G +  +TIS 
Sbjct: 263 RNLRSCDVVVRYGGEEFAVVLPGLDQAELQETAERLCHAVKELKIAHPGLGEAEIVTISV 322

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           GIA     E ++  I RADQ+LY AK+ GRNRV  
Sbjct: 323 GIAPAVPAETLADAIQRADQSLYRAKRGGRNRVSV 357


>gi|157147009|ref|YP_001454328.1| diguanylate cyclase AdrA [Citrobacter koseri ATCC BAA-895]
 gi|157084214|gb|ABV13892.1| hypothetical protein CKO_02786 [Citrobacter koseri ATCC BAA-895]
          Length = 365

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 59/230 (25%), Positives = 103/230 (44%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +FIA ++ +    L  + LT          +E    + + +   LL  ++S     +L  
Sbjct: 136 LFIAGMVLMVVSCLVTLQLTGITVAFRSAPLEWWFSLPVIVIYPLLFAWVSYQTATKLAE 195

Query: 96  SYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   +         +   Y+   +++  DID+FK IND +GH
Sbjct: 196 HKRRLQVMSMRDGMTGVYNRRHWEILLRNEFDNCRRYHRDATLLIIDIDHFKSINDTWGH 255

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+    A    + + + +   ++
Sbjct: 256 DVGDEAIIALTRQLQMTLRGSDVIGRFGGDEFAVIMCGTPADNAIAAMSRVHERLNALRL 315

Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
             +  P + + IS G+A    +       +  AD ALY AK +GRNR   
Sbjct: 316 PCA--PQVILRISVGVAPLTTQIGHYREWLKSADMALYKAKNAGRNRTEV 363


>gi|254226157|ref|ZP_04919753.1| sensory box/GGDEF family protein [Vibrio cholerae V51]
 gi|125621325|gb|EAZ49663.1| sensory box/GGDEF family protein [Vibrio cholerae V51]
          Length = 376

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 11/179 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +LS +D L+ + N   F   L           + LSI+  D+DYFK  N
Sbjct: 194 EQLEAANQELERLSFLDSLTHVANRRRFDEQLHTLWHLHVREGKPLSIILCDVDYFKDYN 253

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH +GD+ +  ++     V       V R GGEEF      + +  A ++A  + + 
Sbjct: 254 DAYGHLMGDETLKQIAIAFTQVANRHSDCVARYGGEEFGILLPNTPQSGAILVAERIHEK 313

Query: 203 IENSQINISSGPSI-HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +    I          IT+S GI       ++    ++  AD+ALY AK +GRN+   +
Sbjct: 314 VRGLAIPHDHSKVADRITVSLGIVTLIPRPEDVPEQMVELADRALYQAKANGRNQTSIY 372


>gi|256829806|ref|YP_003158534.1| response regulator receiver modulated diguanylate cyclase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578982|gb|ACU90118.1| response regulator receiver modulated diguanylate cyclase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 310

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           EL  + + +  LS +D L+ + N   F                 LS++F DID+FK  ND
Sbjct: 126 ELKRNRDLLENLSTLDGLTNIPNRRRFDEIYIQEWNRALRTKSSLSLLFIDIDHFKNYND 185

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  L    G P  F+ R GGEEF      + EQ    LA ++R+ +
Sbjct: 186 LYGHMAGDDCLKAVARVLQSSLGRPADFLARFGGEEFIILLPDTKEQGCLHLAENIRRAL 245

Query: 204 ENSQI-NISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257
           +   I ++ S  + ++T+S G              ++ +AD+ LY AK  GRN V  
Sbjct: 246 KELHIEHLDSSVADYLTVSIGAVTCNDVTQCDRSFLLEQADKLLYQAKHEGRNCVRA 302


>gi|197117046|ref|YP_002137473.1| diguanylate cyclase/phosphodiesterase [Geobacter bemidjiensis Bem]
 gi|197086406|gb|ACH37677.1| diguanylate cyclase/phosphodiesterase [Geobacter bemidjiensis Bem]
          Length = 742

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 98/206 (47%), Gaps = 13/206 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSIL---KELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           L +N +  I S+T   +   +  ++L    E   +  ++ +L+  D L+GLLN    +  
Sbjct: 258 LEQNSTGRIFSLTAFPMGYGMVATLLEDVTEKKRTAEQLERLAYYDSLTGLLNRRMLLDR 317

Query: 122 LG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           +            K++ +F D++ FK IND  GH  GD+++  ++ +L  +      + R
Sbjct: 318 MEQAIGTAQREGVKVATLFMDLNGFKVINDTLGHKAGDQILVEVAKRLQKMVRKRDTLAR 377

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI- 233
           LGG+EF  AA    ++ A+ +A +L   I  + +       +++ +S GI+       + 
Sbjct: 378 LGGDEFVVAATFEKDENASAIAKNLINAI--TPVYQVCDREVYVGVSVGISIFPDDGDVP 435

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
            T++  AD A+Y AK  G+     +S
Sbjct: 436 ETLLKNADIAMYNAKSQGQGGFCFYS 461


>gi|77164777|ref|YP_343302.1| hybrid signal transduction histidine kinase and diguanylate
            cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
            19707]
 gi|76883091|gb|ABA57772.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
            19707]
          Length = 1499

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 12/181 (6%)

Query: 95   ISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFG 147
             +   I QL+  D L+ L N + F   LG          E+ +++F D+D FK +ND  G
Sbjct: 1045 RAEKDIHQLAYHDVLTSLPNRTLFHKQLGELMNRSHLRGEQFAVLFLDLDRFKLVNDTLG 1104

Query: 148  HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENS 206
            H VGD ++   +D++V    +   V RLGG+EF        S + AA +A  +  ++  S
Sbjct: 1105 HEVGDLLLKAAADRIVGCLRSNDMVARLGGDEFTVILEKIESPRVAAEVAAKICSVL--S 1162

Query: 207  QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            ++   SG  ++I+ S GI+      E +ST++  AD A++ AK+ G N    +       
Sbjct: 1163 KVFAFSGQEMYISTSIGISLYPGDGEDVSTLVKHADTAMFRAKEQG-NSYQFYEKGMETA 1221

Query: 266  C 266
             
Sbjct: 1222 A 1222


>gi|226946915|ref|YP_002801988.1| GGDEF domain-containing protein [Azotobacter vinelandii DJ]
 gi|226721842|gb|ACO81013.1| GGDEF domain protein [Azotobacter vinelandii DJ]
          Length = 689

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 13/214 (6%)

Query: 64  ILVENLSLVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +++  LS++  ++ IS+L   L   + S+   L  + + + QL+  D L+ L N      
Sbjct: 220 VIMAALSVMATTLIISVLDSRLEQRTASLASALSKANSELMQLALYDNLTKLPNRMLLAD 279

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            LG   EK        +++F D+D FK IND +GH +GD ++  ++ ++         + 
Sbjct: 280 RLGQAIEKARREHKVFAVLFIDLDGFKAINDAYGHHLGDLLLVEVTQRIRGSVRGQDTIA 339

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-P 232
           RLGG+E           +AA +A  L + I   Q        + ++ S GIA        
Sbjct: 340 RLGGDELILLTEIGEPTDAAKIAGKLIETIR--QPYSIEHHELFVSASVGIAVYPDDGLA 397

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              ++  AD A+Y AK+ GR+    F +  N   
Sbjct: 398 PHELLVNADAAMYHAKEQGRDGYCFFENSMNANA 431


>gi|302186201|ref|ZP_07262874.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 653

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 97/214 (45%), Gaps = 13/214 (6%)

Query: 64  ILVENLSLVIISITISLLLGYI---SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +LV +LS++ I++   +L  ++   +  +   L  +   ++ L+  D L+GL N +    
Sbjct: 170 VLVTSLSILGIALFSCILDSHLETRTAVLADSLTEANLELTHLALHDNLTGLPNRALLTE 229

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            +    ++        +++F D+D FK +ND FGH  GD ++  ++ +L         + 
Sbjct: 230 RIDQAMKRATESGGCFALMFMDLDGFKPVNDAFGHHTGDLLLRQVALRLRNSLHRRDTLA 289

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           R+GG+EF       + ++A  +A   R++ E           + I++S GI     +   
Sbjct: 290 RVGGDEFVLLVELQNPEDALTVAR--RQVNEVGNPFNIGEHQLQISLSIGICMYPGNGST 347

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              ++  AD A+Y  K +G+N    F    N+  
Sbjct: 348 QHELLINADAAMYHTKAAGKNGYSFFDASMNSNA 381


>gi|319763987|ref|YP_004127924.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|317118548|gb|ADV01037.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
          Length = 826

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 10/184 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFK 140
             L     +  RI +L+  D L+GL N        +A I +   +    +I+F D+D FK
Sbjct: 367 RDLSVQHAAQKRIEELAYSDVLTGLPNRLPLNKRVAAAIEASRGHGGGFAILFLDLDRFK 426

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND+ GHP GD+V+  ++++L         + RLGG+EF      +    A  +A  ++
Sbjct: 427 NVNDSLGHPFGDRVLKLVAERLQGCLRQSDMLCRLGGDEFVIYLHDADAAIAESVARRVQ 486

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  E  +  +       I  S G++      + +  +I  AD A+Y  K+ GR     + 
Sbjct: 487 E--EMLRPFMLDEMGFSIQCSIGMSLYPQDGDTLDDLIKHADTAMYRVKERGRGSYGFYQ 544

Query: 260 DIEN 263
              N
Sbjct: 545 PQMN 548


>gi|297566757|ref|YP_003685729.1| diguanylate cyclase [Meiothermus silvanus DSM 9946]
 gi|296851206|gb|ADH64221.1| diguanylate cyclase [Meiothermus silvanus DSM 9946]
          Length = 351

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 94/197 (47%), Gaps = 12/197 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNR---ISQLSRIDCLSGLLNH----SAFISSLGSY 125
           I+ +     L Y+  +    L +++ R   +  L+  D L+GLLN      A    L + 
Sbjct: 159 IVRLAAMAALLYVFSNAKDRLALAHQRARELHLLAHTDGLTGLLNRLGATRALEDRLAA- 217

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              +++V  DID+FK IND FGH VGD V+  +  +L         VGR GGEEF     
Sbjct: 218 QRPIAVVLADIDHFKSINDRFGHAVGDDVLIEVGVRLRDALREGDAVGRWGGEEFLMILE 277

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            +   +A +L   L+  + +            +T+S G+A     E  + ++ RAD+ALY
Sbjct: 278 SAEAGQALVLVERLQNRMHSRPFPGVG----RVTVSLGVAVHQPGESQADLLRRADEALY 333

Query: 246 VAKKSGRNRVVCFSDIE 262
            AK+ GRNR V  +  E
Sbjct: 334 AAKRQGRNRAVLSTPRE 350


>gi|158338665|ref|YP_001519842.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acaryochloris marina MBIC11017]
 gi|158308906|gb|ABW30523.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor, putative
           [Acaryochloris marina MBIC11017]
          Length = 880

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 12/188 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDID 137
           S + +   + +  ++   ++ D ++ L N   F+  L           +   +++F D+D
Sbjct: 422 SQTDVTAYYSTRAQLEFKAQHDEMTQLPNRVLFMERLTHAFRMAKHQQSRLFAVLFLDLD 481

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA 196
            FK IND+ GH VGD+++  +S +L         + R GG+EFA          EA  +A
Sbjct: 482 RFKIINDSLGHRVGDQLLIEVSKRLQQCLRKQDTIARFGGDEFAILLDTVEDADEAIHVA 541

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             + + +  ++I++     ++ + S GI       +    ++  +D A+Y AKK G+N  
Sbjct: 542 QRILQAL-KAKISLEE-HEVYTSASIGITVSSPDYQAPEELLQDSDTAMYRAKKQGKNCF 599

Query: 256 VCFSDIEN 263
             FS    
Sbjct: 600 EVFSSGMR 607


>gi|77361676|ref|YP_341251.1| GGDEF domain-containing protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876587|emb|CAI87809.1| putative GGDEF domain protein [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 856

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 80/182 (43%), Gaps = 12/182 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQ 141
           + E      ++   +  D L+GL N S F++ L            +  +++F D+D FK 
Sbjct: 424 IDERKKIEQQLYHDAHHDSLTGLANRSLFLTQLEKTLQEYHRFVEQHFAVLFIDLDKFKS 483

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLR 200
           IND  GH  GD+ +  +S            + RLGG+EF       +E Q+A  +AN + 
Sbjct: 484 INDQLGHHAGDQFLISVSKLFSQCIREHDLLARLGGDEFVILLTHLTEPQQAEDVANRII 543

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++   +     G S+    S GI       +    II  AD A+Y AK SGRNR   F 
Sbjct: 544 NLMA--EPFCFKGSSLQSGASIGITYSNQSYKNTDEIIRDADAAMYYAKNSGRNRYELFH 601

Query: 260 DI 261
            +
Sbjct: 602 PL 603


>gi|310659582|ref|YP_003937303.1| hypothetical protein CLOST_2281 [Clostridium sticklandii DSM 519]
 gi|308826360|emb|CBH22398.1| membrane protein of unknown function [Clostridium sticklandii]
          Length = 805

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 11/184 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDI 136
           + +  + ++L        + S  D ++GL N              +    EKLSI+  D+
Sbjct: 477 FAATELAQQLKKEKEVAERNSLTDGMTGLANRRYLDEQIMLEYFRMKRTGEKLSIIMLDV 536

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           D+FK  ND +GH  GD+ +  ++  L   +        R GGEEF      + E  A  +
Sbjct: 537 DFFKLYNDAYGHLQGDECLKTVAKVLKTTIKRATDIAARYGGEEFVVLLPDTDEIGAIKV 596

Query: 196 ANDLRKIIENSQINISSGP-SIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGR 252
           A  LR  +E  ++       S  +T+S G+A            ++ +AD+ALY AK SGR
Sbjct: 597 AETLRANVEAMKMEHKDSKISDVVTVSIGVATFDKHSLVAPENLVQKADEALYEAKNSGR 656

Query: 253 NRVV 256
           N+V+
Sbjct: 657 NKVM 660


>gi|283856456|ref|YP_163100.2| diguanylate cyclase with beta propeller sensor [Zymomonas mobilis
            subsp. mobilis ZM4]
 gi|283775460|gb|AAV89989.2| diguanylate cyclase with beta propeller sensor [Zymomonas mobilis
            subsp. mobilis ZM4]
          Length = 1045

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 62/182 (34%), Positives = 99/182 (54%), Gaps = 11/182 (6%)

Query: 82   LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFF 134
            L ++      EL  +  ++S+L+  D L+GLLN  A ++ L   ++        +SI   
Sbjct: 865  LQHLVDDRTHELQQANKQLSELANTDVLTGLLNRRALMAKLSELHQDALLNENAISIAML 924

Query: 135  DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
            D+D+FK+IND +GH VGD V+   +  +        F GR GG+EF   A+ +S + +  
Sbjct: 925  DVDHFKKINDRYGHLVGDDVMRNAASIIRNNIRQEDFAGRYGGDEF-IIAISASIEMSRH 983

Query: 195  LANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +A  +R   E ++I I +G   + IT+S G+ E   +E IS  + +AD  LY AK +GRN
Sbjct: 984  IAERIRN--EFTKIVIKNGETELKITVSIGLFEITTEESISIALDKADSLLYWAKNNGRN 1041

Query: 254  RV 255
            RV
Sbjct: 1042 RV 1043


>gi|241763392|ref|ZP_04761447.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
 gi|241367434|gb|EER61745.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
          Length = 948

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 11/192 (5%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           +  YIS    + E   +  RI  L+  D L+GL N + F +               L+++
Sbjct: 493 ITHYISVQEDISERKSNEERIRHLANFDALTGLPNRAMFSARFSQALGLSQRSEGSLALL 552

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           + D+D FK +ND+ G+ VGD V+  ++ +L  +      V R GG+EF      ++ Q A
Sbjct: 553 YLDLDRFKNVNDSLGYAVGDGVLIDVAHRLKALLRDEDTVSRYGGDEFLVVLPLTTAQGA 612

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
              A  L    E S+       ++ +T S GIA        +  + + A+ A+Y AK+ G
Sbjct: 613 VHFAERLHG--ELSKACQVESHALLVTFSVGIAMYPGDGSDMEALTHHAEVAMYKAKEMG 670

Query: 252 RNRVVCFSDIEN 263
           R+    FS    
Sbjct: 671 RDHYCFFSADMQ 682


>gi|119897545|ref|YP_932758.1| putative signaling protein [Azoarcus sp. BH72]
 gi|119669958|emb|CAL93871.1| conserved hypothetical signaling protein [Azoarcus sp. BH72]
          Length = 578

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 80/178 (44%), Gaps = 11/178 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L +L  S   +++ +  D L+GL N   F   L           + L++++ D+D FKQ+
Sbjct: 396 LDDLHDSRAELARQASHDALTGLANRRHFEERLEQALARCRRNGQSLALIYIDLDGFKQV 455

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRK 201
           ND  GH  GDK++  ++ +L         V RLGG+EF       S  E   ++A  L  
Sbjct: 456 NDRHGHATGDKLLQAVARRLQQAVREIDTVARLGGDEFVILFDQVSSHESVVLIAEKLLL 515

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           ++    + I    ++ +  S GI+           ++  AD A+Y AK  GR+    F
Sbjct: 516 MLR-MPVEI-DALTLPVRASIGISMYPDDAPDAHALLNHADCAMYRAKTHGRDSYRFF 571


>gi|56477116|ref|YP_158705.1| diguanylate cyclase/phosphodiesterase domain-containing protein
           [Aromatoleum aromaticum EbN1]
 gi|56313159|emb|CAI07804.1| putative diguanylate cyclase/phosphodiesterase domain 2 (EAL)
           [Aromatoleum aromaticum EbN1]
          Length = 1121

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 10/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           + + +L  S  ++ +L+  D L+ L N     S L    E+       L ++F D+D FK
Sbjct: 677 TDISQLKQSQAQLERLAHYDPLTNLPNRLLVQSRLEHAIEQASRQQLGLGVLFIDLDRFK 736

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            IND+ GH  GD+++  +S +L         + R GG+EF        +  E+A +A +L
Sbjct: 737 NINDSLGHATGDELLVAISWRLRTRLRPEDTLARWGGDEFLVIIDNLRKPDESASVAQNL 796

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             ++     ++  G  +++  S GI+         + +I  AD AL  AK  GRN    F
Sbjct: 797 IDLM-GEPFSLPGGEVVYVGASVGISLYPQDGTSAAELIQHADAALNQAKAQGRNTFRFF 855

Query: 259 SDIENNTC 266
           ++  +   
Sbjct: 856 TEALSQAA 863


>gi|289207865|ref|YP_003459931.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Thioalkalivibrio sp. K90mix]
 gi|288943496|gb|ADC71195.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Thioalkalivibrio sp. K90mix]
          Length = 1301

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 87/189 (46%), Gaps = 12/189 (6%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
            + L  L  S N +  L++ D L+ L N S         +    +    L+++  D+D FK
Sbjct: 849  TDLSALKRSQNELEYLAQHDSLTDLPNRSQLQTLLGRALERARAERRGLAVLCLDLDRFK 908

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
             +ND+ GH VGD+V+  ++ +L  V  +P  +GRLGG+EF A    +   E A      R
Sbjct: 909  TLNDSLGHSVGDRVLLEVARRLADVLESPDLLGRLGGDEFLAVLESADTHELAE--ERAR 966

Query: 201  KIIE--NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             ++E       +  G  +++  S G++      + +  +I  AD A+Y AK  GR     
Sbjct: 967  ALLEVLQRPFVLDDGQVVYVNASIGVSRFPADGDTVVDLIQHADAAMYHAKALGRETWSF 1026

Query: 258  FSDIENNTC 266
            +++      
Sbjct: 1027 YTEDLTQAA 1035


>gi|186681533|ref|YP_001864729.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Nostoc
           punctiforme PCC 73102]
 gi|186463985|gb|ACC79786.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Nostoc
           punctiforme PCC 73102]
          Length = 742

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 11/186 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFF 134
           +      +  +L  +   + +L+  D L+ + N   F          L      LS++  
Sbjct: 544 IAIQQSELYHQLQQANQELQRLACSDGLTQVGNRRCFDDTFNTQWQRLAREQGSLSLILC 603

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           D+DYFK  ND  GH  GD  +  ++  +   V      V R GGEEFA     +  + A 
Sbjct: 604 DVDYFKLYNDTHGHLAGDDALRQVAKVISQTVKCPADLVARYGGEEFAVILPNTDIEGAI 663

Query: 194 ILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKE--PISTIIYRADQALYVAKKS 250
            +A D++  I   ++       S  IT+S G+A          +T+I  ADQ LY AK  
Sbjct: 664 AVAKDIQTNISALKMPHPHSQVSEFITLSLGVATITPHSQLSPATLIAAADQGLYQAKAQ 723

Query: 251 GRNRVV 256
           GRN VV
Sbjct: 724 GRNCVV 729


>gi|163784009|ref|ZP_02178970.1| GGDEF domain protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880719|gb|EDP74262.1| GGDEF domain protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 275

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 107/227 (47%), Gaps = 17/227 (7%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQL 103
           F+  IFLF+  +    GL  +    LS     + I  ++ Y+  S++KE       + ++
Sbjct: 52  FLYGIFLFFTAVVHISGLVSLPYNPLS-YFTILIIISIIIYVGNSVVKETLEKLLFLDKI 110

Query: 104 SRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  D L+GL N    I            YN  LSI+  DID FK+IND FGH  GDK++ 
Sbjct: 111 ANQDILTGLHNRKKLIEILKNELIRARRYNRPLSILLLDIDDFKKINDKFGHNFGDKILQ 170

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             +  L +        GR GGEEF      ++++ A  +A  +R +I N   +I      
Sbjct: 171 EFAKLLKMSLRNTDHAGRWGGEEFIIVLPETNKKNAVKVAEKIRNLIGNYFEDIYGKK-- 228

Query: 217 HITISAGIAERCH--KEPIS----TIIYRADQALYVAKKSGRNRVVC 257
            IT+S G+ E      E I      II  AD+ALY AK+ G+N+V  
Sbjct: 229 -ITVSIGLTEFKDWKNESIDVIMHEIIEIADKALYKAKRDGKNQVAV 274


>gi|195953696|ref|YP_002121986.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195933308|gb|ACG58008.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 441

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 60/201 (29%), Positives = 93/201 (46%), Gaps = 11/201 (5%)

Query: 72  VIISITI--SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---- 125
           +I S+ I  + +L   +   ++E          LS  D L+   N   F   L +     
Sbjct: 240 LITSVIIHQANMLNIATIYDIQEELKQREVYKVLSETDELTKAYNRRFFDEILDALVDAY 299

Query: 126 ---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                  S++ FDID FK+IND +GH  GD ++  +S+ +           R+GGEEFA 
Sbjct: 300 KNKTAPFSLIIFDIDDFKKINDTYGHDAGDLILKRISELVKANIRQEDIFCRIGGEEFAI 359

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
                    A +++  LRKI+E +        +I  TIS G+AE    +   T+  +AD+
Sbjct: 360 ILKQIDIFGAYVVSEKLRKIVETTNFTYKD-KTIKTTISLGVAEFGKNDTKETLFKKADR 418

Query: 243 ALYVAKKSGRN-RVVCFSDIE 262
           ALYV+K SG+N   + F D  
Sbjct: 419 ALYVSKTSGKNMSYLFFGDFM 439


>gi|148556869|ref|YP_001264451.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Sphingomonas wittichii RW1]
 gi|148502059|gb|ABQ70313.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingomonas wittichii RW1]
          Length = 887

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 57/190 (30%), Positives = 85/190 (44%), Gaps = 11/190 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGS---YNEKLSIVFFDIDY 138
           SG+ L E+  S   + +L+  D L+GL N          SL       ++ ++   D+D 
Sbjct: 344 SGTDLTEMRRSEAEVKRLASYDSLTGLPNRILMRRTLDESLRDIAGRPKRAALFMLDLDR 403

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND  GHPVGD ++  ++ +L  V      VGRLGG+EF     G  E+    LA  
Sbjct: 404 FKMVNDTLGHPVGDALLRQVAVRLQRVVQQDGQVGRLGGDEFNVVLPGIVERN--RLATL 461

Query: 199 LRKIIEN-SQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              II+  SQ  +  G  + I  S GIA           ++  AD ALY AK  G+    
Sbjct: 462 ASAIIQQLSQPYLIDGAHVSIGASIGIAIAPDDGATADALVRNADLALYAAKADGKGVHR 521

Query: 257 CFSDIENNTC 266
            +    + + 
Sbjct: 522 FYEPEMHASA 531


>gi|152995952|ref|YP_001340787.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150836876|gb|ABR70852.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 365

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 67/249 (26%), Positives = 122/249 (48%), Gaps = 18/249 (7%)

Query: 25  HTFMIY-----FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS 79
           ++F+++     F+ ++ + I+ V+F+    L   G+      +  +V     + +S   +
Sbjct: 119 YSFVVFRVDQNFAKYWIVSISIVLFLMCELLNTRGIY-LTSFDQSVVVVFVFLALSFNFA 177

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIV 132
           +++  +    +K L    + +  L+ +D L+GL N    ++   +         E     
Sbjct: 178 MVINLV----IKRLKSVNSHLRTLAEMDELTGLSNRRKVLADAVNIFADSVINRESCVFA 233

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK+IND FGH  GD V+A +S  +  V  +   +GR GGEEF      +S ++A
Sbjct: 234 IVDLDHFKKINDTFGHEAGDLVLAKVSAMMASVIRSQDEIGRYGGEEFIVIMPDTSLKDA 293

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSG 251
            ++   +R+ +EN  I    G  I +T+S G+A           I+ +AD+ LY AK++G
Sbjct: 294 EVVMERMRQSVENMLIETEHGIVIPVTVSIGVAAIAPSVSRYEEILAQADKGLYTAKRNG 353

Query: 252 RNRVVCFSD 260
           RNRV   SD
Sbjct: 354 RNRVSVQSD 362


>gi|126172561|ref|YP_001048710.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|125995766|gb|ABN59841.1| diguanylate cyclase [Shewanella baltica OS155]
          Length = 340

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 10/179 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL  +  ++  LS  D L+ + N   F   L          N  L+++  DID+FKQ ND
Sbjct: 161 ELAEANRQLEILSNTDSLTNIGNRRLFDMMLQTEWSRGQRSNSSLALIMLDIDHFKQFND 220

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           ++GH  GD  +  L+  L          V R GGEEF        +Q     A  + ++I
Sbjct: 221 HYGHLAGDDCLKQLASTLSQSGRRAGELVARYGGEEFVILLPNIDKQTVLDTAQHIHQLI 280

Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +   I  +      + +SAG+A  +  +++    ++ +AD ALY AK +GRN +   ++
Sbjct: 281 QAIAIPHADTDLGIVPVSAGVAYLQPSNQQNALELVRQADAALYRAKSAGRNCIRVMNE 339


>gi|260773786|ref|ZP_05882701.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Vibrio metschnikovii CIP 69.14]
 gi|260610747|gb|EEX35951.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Vibrio metschnikovii CIP 69.14]
          Length = 919

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 56/216 (25%), Positives = 95/216 (43%), Gaps = 12/216 (5%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G EY+    ++ VI      ++   I+   + +   + ++I QL+  D L+GL N    +
Sbjct: 437 GEEYLQWTMITAVISDHEDEIINYVITLIDITQRKAAESKIKQLAFYDQLTGLPNRQLLM 496

Query: 120 SSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L           +  +I++ D+D FK +ND  GH  GDK +  +S +L+        V
Sbjct: 497 ERLESARLNSQRNGQYGAILYLDLDDFKTLNDTRGHDTGDKFLTLVSQRLLDCVRRTDTV 556

Query: 173 GRLGGEEFAAAA--LGSSEQEAAILANDLRKIIEN--SQINISSGPSIHITISAGIAERC 228
            R+GG+EF      L S    A+  A+ L + I +  S+           T+S G+    
Sbjct: 557 ARIGGDEFVIILEQLDSDLDIASKRADLLCRKILDTLSKPYYIDNIEHFSTLSIGVTLFL 616

Query: 229 HKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            +   I  ++  AD A+Y AK +GRN    F+    
Sbjct: 617 GETKGIDELLKHADLAMYQAKGAGRNTHRFFNPEMQ 652


>gi|254000428|ref|YP_003052491.1| PAS/PAC sensor-containing diguanylate cyclase [Methylovorus sp.
           SIP3-4]
 gi|253987107|gb|ACT51964.1| diguanylate cyclase with PAS/PAC sensor [Methylovorus sp. SIP3-4]
          Length = 323

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 98/213 (46%), Gaps = 18/213 (8%)

Query: 62  EYILVENLSLVIISI--TISLLLGYI-----SGSILKELFISYNRISQLSRIDCLSGLLN 114
           EYI + ++  V+ +    +  L+G++          ++L      + +LS  D L+ + N
Sbjct: 108 EYIWIRDVVHVLRNADGEVEALIGFMFDISERKKTEEKLLQLQKELEELSFQDGLTRVAN 167

Query: 115 HSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-F 166
              F S       +    ++ LS++  DIDYFKQ ND++GH  GD  +  +++ L     
Sbjct: 168 RRMFDSIIQVEWTNARRNSQPLSLIMLDIDYFKQYNDHYGHIQGDDCLKQVAEILSSAGT 227

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS---GPSIHITISAG 223
               F  R GGEEF      +    A  +A   RK+I  +QI  +    GP + I++  G
Sbjct: 228 RANDFFARFGGEEFVLVLPQTDSDAAKKIAERCRKLIFKAQIPHAKSLIGPVLTISVGVG 287

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                +++     I   DQ LY AK+ GRN ++
Sbjct: 288 TVIPGYQDESVDFINSVDQRLYQAKQLGRNCII 320


>gi|170079448|ref|YP_001736086.1| sensory transduction protein [Synechococcus sp. PCC 7002]
 gi|169887117|gb|ACB00831.1| sensory transduction system regulatory protein (diguanylate cyclase
           (GGDEF) domain) [Synechococcus sp. PCC 7002]
          Length = 473

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 65/208 (31%), Positives = 103/208 (49%), Gaps = 15/208 (7%)

Query: 64  ILVENLSLVI-ISITISLLLGYISGSI---LKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           IL  +LSLV+ I++  ++ L     ++    +E+ +    + +LS +D L+G+ N   F 
Sbjct: 260 ILGSSLSLVLAIAVWFAIRLQAQVEALKQAQQEILMLNQELEELSHLDGLTGIANRRMFD 319

Query: 120 -------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMF 171
                       Y   L+++  DID+FK  ND++GH  GDK I  +S  + ++       
Sbjct: 320 LTLTKEWQRAVRYQYPLALMMIDIDFFKNYNDHYGHQKGDKCIQQVSSWVNLMARRPTDL 379

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAG--IAERC 228
             R GGEEF           A  +A +L K I  ++I     P S  ITIS G  +A+  
Sbjct: 380 AARYGGEEFVLLLTNVDFASAKNIAQELIKAITKAKIPHPKSPISEFITISIGLHVAQPQ 439

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  +   I++AD+ALY AK  GRNR+V
Sbjct: 440 PQADMGHFIFQADKALYQAKHEGRNRIV 467


>gi|324005885|gb|EGB75104.1| diguanylate cyclase domain protein [Escherichia coli MS 57-2]
          Length = 302

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LLL  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 100 LTLLWALFTSMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAK 159

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 160 LCHTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEEF 219

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G++  +AA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 220 CVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 279

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 280 LADRRLYLAKQAGRNRV-FASD 300


>gi|253690643|ref|YP_003019833.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251757221|gb|ACT15297.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 480

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 73/251 (29%), Positives = 115/251 (45%), Gaps = 30/251 (11%)

Query: 28  MIYFSIFFS----IFIATVIFIANIFLFYIGLTPFYG---------LEYILVENLSLVII 74
           +IY S+  S    I + T   IA  +++   L   +          L Y+   N S++II
Sbjct: 232 LIYLSLSHSFNKIILMCTATGIALNYIYINRLINVHDTIEKEYLFELSYLFQINTSVIII 291

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYN 126
           ++ I+          + +   +  RI  +S  D L+G+LN  +    +           N
Sbjct: 292 TVLIASFF-------INKNRKNIKRIELISNHDALTGMLNRRSLNQHMMNIINSTRDGDN 344

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           + +S++  DID+FK++ND +GH VGD VI   S  L         + R GGEEF     G
Sbjct: 345 KIMSLLVLDIDHFKKVNDTYGHAVGDNVIREFSTTLKQYTRPQDLLCRWGGEEFLIIIQG 404

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQAL 244
            S  +   +A  +R IIE + + IS G  +  T S G++    +  E        AD+ L
Sbjct: 405 LSVNDCLDIAERIRSIIEGAPLAISDGHIVRCTTSIGVSFFQLERIEDFHEAFKEADELL 464

Query: 245 YVAKKSGRNRV 255
           Y+AK+ GRNRV
Sbjct: 465 YMAKEQGRNRV 475


>gi|226313740|ref|YP_002773634.1| hypothetical protein BBR47_41530 [Brevibacillus brevis NBRC 100599]
 gi|226096688|dbj|BAH45130.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 746

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 14/168 (8%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDK 153
           +N + ++   D L+GL         +    EK    S++  DIDYFK +ND FGH VGD+
Sbjct: 585 HNEMERMVITDNLTGLYTRRHLNERVRGSLEKDNYGSLILIDIDYFKTVNDTFGHQVGDE 644

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  +S+ +           R GGEE A       +  A  +A  +R+ +E         
Sbjct: 645 VLIQVSNLIRHSIRDSDIAARWGGEELAVYLPRVDKNTAHSVAERIRECVEQE------- 697

Query: 214 PSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVVC 257
            S  +TIS G+A+   +      +  + ++AD ALY AK SGRN+VV 
Sbjct: 698 TSPQVTISCGLAKWSREMDVNLSVEALFHQADIALYEAKNSGRNQVVL 745


>gi|119470124|ref|ZP_01612890.1| hypothetical protein ATW7_13563 [Alteromonadales bacterium TW-7]
 gi|119446545|gb|EAW27819.1| hypothetical protein ATW7_13563 [Alteromonadales bacterium TW-7]
          Length = 423

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 9/179 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
            E   + + +  ++ +D L+ + N   F   L    +K       +S++  D+D+FKQ N
Sbjct: 244 TERIEAEDILRDMAFLDSLTKIANRRRFDEKLAHEFDKAKECEGAISLIIIDVDFFKQFN 303

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD  +  ++  +   V     FV R GGEEF      + ++ A  +A  ++K 
Sbjct: 304 DRYGHLAGDSCLYEVAQTIASTVNRPEDFVARYGGEEFVVLLPDTDKEGALFIAEQIQKA 363

Query: 203 IENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +E   I      S  +++S G+ +    ++   + +  AD ALY AK  GRN +   S+
Sbjct: 364 VEALAIVHEDTYSGFLSVSMGVNSTASSQDDKVSFVKGADNALYYAKDQGRNCIALHSE 422


>gi|300088209|ref|YP_003758731.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527942|gb|ADJ26410.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 1108

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  D L+GL NH  F   +     +        S++  D+D FK  ND +GH  GD+++ 
Sbjct: 727 ANTDELTGLYNHRHFHERVEQEISRGSRFGITFSLILLDLDLFKVYNDIYGHLAGDQLLR 786

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +   +           R GGEEFA     +   +A  +A  LRK IE      SS   +
Sbjct: 787 KVGQMIQSSIRNIDLPFRYGGEEFAVLLPETRIDDAYRVAERLRKTIEAR----SSFREM 842

Query: 217 HITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFSD 260
            +T S G++   +   +   +I+RAD ALY AK++GRNR    S+
Sbjct: 843 PVTASLGVSNWPNDGLLKEELIHRADTALYRAKRTGRNRTCLASE 887


>gi|289663006|ref|ZP_06484587.1| sensor histidine kinase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 551

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 60/193 (31%), Positives = 89/193 (46%), Gaps = 11/193 (5%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE----- 127
           + S+T++          L  L +    + Q S  D L+GL N      +L          
Sbjct: 352 LASLTVAEAAAEQLSLALHNLRL-RETLRQQSIRDPLTGLYNRRYLEETLNHELARCTRR 410

Query: 128 --KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              LS++  D+D+FKQ ND  GH  GD+V+A +   L+          R GGEE      
Sbjct: 411 VLPLSVLMLDVDHFKQFNDLHGHSGGDRVLAAIGALLLSQTRGEEICCRYGGEELTIILP 470

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERC-HKEPISTIIYRADQA 243
                 A ++A  LR  IE  Q+ +  G S+  +T S G A    H   ++ ++ RAD+A
Sbjct: 471 EVDLLTACMMAEKLRVGIEALQV-MGDGVSLPKVTASFGAASFPDHAGTVAQLLQRADEA 529

Query: 244 LYVAKKSGRNRVV 256
           LY AK+ GRN+VV
Sbjct: 530 LYRAKQGGRNQVV 542


>gi|288917008|ref|ZP_06411379.1| diguanylate cyclase [Frankia sp. EUN1f]
 gi|288351548|gb|EFC85754.1| diguanylate cyclase [Frankia sp. EUN1f]
          Length = 526

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 105/255 (41%), Gaps = 25/255 (9%)

Query: 23  SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL 82
           SP     + ++ +++       +           P   +E      +SL+++++T  ++ 
Sbjct: 266 SPRAMWAHAALPYTVLAVAGTLVLGRLA---AGAPLDRVEA--YGTVSLLVLALTRQMIT 320

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---------------NE 127
              +  +L  L     ++   +  D L+GL N   F   L                  +E
Sbjct: 321 IAENTHLLTALREREEQLHYQAFHDPLTGLANRELFARRLRQAVGPSPEPDNDDAPTGHE 380

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            +S++F D+D+FK +ND FGH  GD+++   +D+L     +   V R GG+EFA   +GS
Sbjct: 381 TVSVLFIDLDHFKAVNDAFGHAAGDELLKISADRLQNAARSTDTVARFGGDEFAVILIGS 440

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQAL 244
               A  +A  L   ++       +        S G+A   H        T+++ AD A+
Sbjct: 441 DPDTAVPIAQRLATAVQT--PCHLADHPYRPRASLGLATLDHTTEPACPDTLLHHADLAM 498

Query: 245 YVAKKSGRNRVVCFS 259
           Y AK+     +V + 
Sbjct: 499 YAAKRRRTRGLVVYD 513


>gi|260754039|ref|YP_003226932.1| diguanylate cyclase with beta propeller sensor [Zymomonas mobilis
            subsp. mobilis NCIMB 11163]
 gi|258553402|gb|ACV76348.1| diguanylate cyclase with beta propeller sensor [Zymomonas mobilis
            subsp. mobilis NCIMB 11163]
          Length = 1045

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 62/182 (34%), Positives = 99/182 (54%), Gaps = 11/182 (6%)

Query: 82   LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFF 134
            L ++      EL  +  ++S+L+  D L+GLLN  A ++ L   ++        +SI   
Sbjct: 865  LQHLVDDRTHELQQANKQLSELANTDVLTGLLNRRALMAKLSELHQDALLNENAISIAML 924

Query: 135  DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
            D+D+FK+IND +GH VGD V+   +  +        F GR GG+EF   A+ +S + +  
Sbjct: 925  DVDHFKKINDRYGHLVGDDVMRNAASIIRNNIRQEDFAGRYGGDEF-IIAISASIEMSRH 983

Query: 195  LANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +A  +R   E ++I I +G   + IT+S G+ E   +E IS  + +AD  LY AK +GRN
Sbjct: 984  IAERIRN--EFTKIVIKNGETELKITVSIGLFEITTEESISIALDKADSLLYWAKNNGRN 1041

Query: 254  RV 255
            RV
Sbjct: 1042 RV 1043


>gi|89092959|ref|ZP_01165910.1| PAS sensor diguanylate cyclase/phosphodiesterase [Oceanospirillum
           sp. MED92]
 gi|89082609|gb|EAR61830.1| PAS sensor diguanylate cyclase/phosphodiesterase [Oceanospirillum
           sp. MED92]
          Length = 948

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 97/185 (52%), Gaps = 11/185 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYF 139
           G  L E   +  R+  ++  D L+ L N   F      ++  Y EK   L+I+F D+D F
Sbjct: 500 GLDLTERMHAEKRLVWMANHDPLTALPNRLLFTEKVDEAIKRYQEKNGILAILFCDLDSF 559

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K +ND+ GHPVGD+++   ++++  +      + RLGG+EF     G ++ +E   +A  
Sbjct: 560 KDVNDSLGHPVGDELLQQAAERIQNIICNDGVLARLGGDEFTVLLEGRANIREIENVAQH 619

Query: 199 LRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +    S      G  I  TIS GI+    H + ++++I  AD A++ AK+SG+N++  
Sbjct: 620 IIRAFRQS--FFIDGYEIFSTISIGISLHPDHGDNVTSLIQHADVAMFDAKESGKNQLRF 677

Query: 258 FSDIE 262
           + D +
Sbjct: 678 YHDEQ 682


>gi|323496216|ref|ZP_08101274.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
 gi|323318493|gb|EGA71446.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
          Length = 305

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 9/175 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
            E     + + + + +D L+GL+N  +F  +             + +++  DID FK+IN
Sbjct: 129 TESEQMKSTLKKQAFLDELTGLMNRRSFFDAAKRFLTTRNSEQLECALLMLDIDEFKEIN 188

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH VGD+VI  ++  L         + RLGG+EFA        ++A+ +A  +   +
Sbjct: 189 DTHGHLVGDEVINQVARVLNSHVREGDILARLGGDEFAIILPDLDAEKASSVAQRMCASV 248

Query: 204 ENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              ++   S P + +T+S GI         I   + RAD+ALY AK++G+N+  C
Sbjct: 249 RALKLTQLSEP-LKVTVSIGITGIHLSDNQIKHALSRADKALYHAKETGKNKFYC 302


>gi|308271056|emb|CBX27666.1| hypothetical protein N47_H24880 [uncultured Desulfobacterium sp.]
          Length = 347

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 61/186 (32%), Positives = 90/186 (48%), Gaps = 11/186 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           KEL  +   +  +S ID L+ + N   F   +    +        LS +  DID FK  N
Sbjct: 159 KELEKTNKILQDISSIDGLTSIPNRRCFDDFVNREWKSAVRKSTSLSFIMIDIDNFKAYN 218

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DN+GH  GD+ +  +   L   V      V R GGEEF AA + +    A+ +A  +   
Sbjct: 219 DNYGHQEGDECLKQIGKVLKEAVKRPQDLVARYGGEEFIAALVDTDPNGASTVAERICSK 278

Query: 203 IENSQINISSGPSIHI-TISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++   I  +  P+ +I TIS GIA           + I  AD+ALY+AKK GRN++  FS
Sbjct: 279 VKALNIPHAFSPTANIVTISMGIAGGIPNRESLPGSFITMADKALYLAKKEGRNQIRLFS 338

Query: 260 DIENNT 265
           + E N+
Sbjct: 339 ETEENS 344


>gi|255527612|ref|ZP_05394474.1| putative phytochrome sensor protein [Clostridium carboxidivorans
           P7]
 gi|255508684|gb|EET85062.1| putative phytochrome sensor protein [Clostridium carboxidivorans
           P7]
          Length = 911

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 11/175 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144
           E   +   + +++  D L+GL N   F S L +  +        L+I+F D+D FK IND
Sbjct: 738 ERKKAEKLLEEMANHDNLTGLPNRKLFYSELKNSLQLAKENKFSLAILFIDLDGFKMIND 797

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD V+  +S +L+        V R GG+EF        +     + +  + II 
Sbjct: 798 TLGHSSGDIVLKIVSQRLLKTVREGDMVSRFGGDEFIIFMTNVHQNN--TIRDVCKNIIN 855

Query: 205 NSQINISSGPSI-HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
                I  G +  ++++S G++    H + I  +I +AD A+Y AK SG+N+V+ 
Sbjct: 856 EISKKIVLGENYGYVSVSIGVSIFPDHGDNIEELIKKADAAMYRAKNSGKNKVIF 910


>gi|324114607|gb|EGC08575.1| diguanylate cyclase domain-containing protein [Escherichia
           fergusonii B253]
          Length = 399

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 64/233 (27%), Positives = 108/233 (46%), Gaps = 13/233 (5%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPF--YGLEYILVENLSLVIISITISLLLGYISGSILKE 92
             +F+A ++ +    L  + LT          L   LSL +I +   L+  ++S     +
Sbjct: 168 IRLFVAGLVLMVVACLVTLQLTGIRVAFTSSPLEWWLSLPVI-VFYPLIFAWVSYQTATK 226

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L     R+  +S  D ++G+ N   + + L         Y    +++  DID+FK IND 
Sbjct: 227 LAEHKRRLQVMSARDGMTGVYNRRHWETLLCIEFDHCRRYQRDATLLIIDIDHFKSINDT 286

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH VGD+ I  L+ QL +   +   +GR GG+EFA    G+  + A    + + + +  
Sbjct: 287 WGHDVGDEAILALTRQLQMTLRSSDVIGRFGGDEFAVIMCGTPAENAIAAMSRVHERL-- 344

Query: 206 SQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           S + +S  P + + IS G+A    +       +  AD ALY AK +GRNR   
Sbjct: 345 SHLRLSCAPQVILRISVGVAPLTPQISHYREWLKSADMALYKAKSAGRNRTEV 397


>gi|307822843|ref|ZP_07653074.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307736447|gb|EFO07293.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 719

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 11/180 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            +     + + +  L+  D L+ L N       +            + +++F D+D FK 
Sbjct: 278 DITHFKKAQDHLGFLAYHDPLTRLPNRLLLKDRIDHSLQNALREGSQAAVLFLDLDRFKG 337

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH VGD ++  ++ ++  +      V R  G+EF          +A   A   +K
Sbjct: 338 INDTYGHAVGDGLLREVAKRIKNLVRKEDTVSRYAGDEFVVFMENIP--DAKNPAKLAQK 395

Query: 202 IIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +IE     +   G  + I+ S GI+          T+I  AD A+Y AKK GRN    +S
Sbjct: 396 LIETFNAPVYIKGYRLKISTSVGISLFPQDGRDTDTLIKNADAAMYRAKKEGRNNFQYYS 455


>gi|325981622|ref|YP_004294024.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas sp. AL212]
 gi|325531141|gb|ADZ25862.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas sp. AL212]
          Length = 966

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 57/186 (30%), Positives = 85/186 (45%), Gaps = 9/186 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
           G  + E       ++ L+  D L+ L N   F       +S    YN   +++FFD+D F
Sbjct: 527 GLDVTEYKRVEGHLAWLADHDPLTNLFNRRRFSEELEQVLSRAERYNHPGALLFFDLDRF 586

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND  GH  GD ++  +S  L          GRLGG+EFA      +   A  +A  +
Sbjct: 587 KYINDTSGHQAGDTLLKMVSSMLAQNIRADDITGRLGGDEFAIILPEINANGAIGVAKKV 646

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +  +Q+ I +  +  I+ S GIA    H   I  ++  AD A+Y AK  GRN    F
Sbjct: 647 LDQLGLAQLTI-NNRTHKISASIGIALFPEHGANIHDLLAAADLAMYQAKAMGRNAWYLF 705

Query: 259 SDIENN 264
           SD + +
Sbjct: 706 SDKDRS 711


>gi|170694697|ref|ZP_02885848.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia graminis C4D1M]
 gi|170140328|gb|EDT08505.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia graminis C4D1M]
          Length = 765

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 15/194 (7%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----------LSIV 132
            IS + +  +  +  ++  L+  D L+GL N +     + S               ++++
Sbjct: 313 LISFTDIGPVREAQRQLKFLATRDSLTGLYNRAYLTERMNSLFAPGAPNGSGEFANVAVL 372

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F D+D FK++ND  GH  GD ++  ++ +L    G    + R+GG+EF      S   + 
Sbjct: 373 FVDLDGFKKVNDTAGHEAGDALLKSVAQRLAGCVGPDDTLARVGGDEFVIVVGASDCSD- 431

Query: 193 AILANDLRKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
             L    R I++   +  + +    ++  S GI+      +   T++  AD A+Y AK+ 
Sbjct: 432 -RLIALARHILDEIAVPFAVADNEYYLGASIGISRFPEDGQDAPTLMRNADSAMYHAKQR 490

Query: 251 GRNRVVCFSDIENN 264
           GRN    F+   N 
Sbjct: 491 GRNNFQFFTAELNQ 504


>gi|114776517|ref|ZP_01451562.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Mariprofundus ferrooxydans PV-1]
 gi|114553347|gb|EAU55745.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Mariprofundus ferrooxydans PV-1]
          Length = 592

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 60/171 (35%), Positives = 84/171 (49%), Gaps = 9/171 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDN 145
           L  +      L+R D L+G LN  A              YN  L++V  D+D FK INDN
Sbjct: 417 LEQAMRDTEHLARTDALTGALNRRACFESGETEFDRARRYNTPLAVVMIDLDLFKSINDN 476

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD V+  + + L  +  T   +GR+GGEEF      +S Q+AA L    R  I  
Sbjct: 477 YGHATGDAVLVAVVETLRGMTRTVDTIGRIGGEEFIVLLPQTSLQDAAALTERYRGAIGQ 536

Query: 206 SQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++ +    +I +T S G+A      E ++  I RAD ALY AK  GRN +
Sbjct: 537 LEVTLDD-LAIKVTASFGVACVDVTGETLTQAIGRADAALYRAKSRGRNCI 586


>gi|194433825|ref|ZP_03066099.1| sensory box-containing diguanylate cyclase [Shigella dysenteriae
           1012]
 gi|194417928|gb|EDX34023.1| sensory box-containing diguanylate cyclase [Shigella dysenteriae
           1012]
 gi|332098150|gb|EGJ03123.1| hypothetical protein SD15574_0397 [Shigella dysenteriae 155-74]
          Length = 410

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 78/175 (44%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D  K
Sbjct: 238 DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRLK 296

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 297 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 356

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 357 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 407


>gi|332533494|ref|ZP_08409357.1| GGDEF domain protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037041|gb|EGI73499.1| GGDEF domain protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 617

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 85/179 (47%), Gaps = 11/179 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL      +  L+  D L+G+ N   F   L             LSIV  DID FK I
Sbjct: 436 LRELEEKNRSLELLNTEDALTGIKNRRFFDKKLVMELRRSRREQTPLSIVMLDIDRFKNI 495

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH +GD+VI  +SD +      P   V R GGEEF      +  + A  +A  +R 
Sbjct: 496 NDTYGHIIGDQVIKAVSDLIKDHLKRPLDEVARYGGEEFVVLLPNTPSEGAQDIAEKIRA 555

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCF 258
            I  S + +++   I  TISAG+      +          AD+ALY AK+ GRN+V+ F
Sbjct: 556 DISVSTVTVANN-DIQFTISAGVYTSIADDVSNPQIFTECADKALYYAKQHGRNQVITF 613


>gi|325918920|ref|ZP_08180991.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325534854|gb|EGD06779.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 375

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 91/198 (45%), Gaps = 14/198 (7%)

Query: 71  LVIISITISLLLG--YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG----- 123
           +VI ++  +LLLG        L+ +  +  ++S  + +D L+G+ N  AF   L      
Sbjct: 175 VVIATLGCALLLGVGIWLDLQLRRMHRNEAKLSSEAWVDALTGIANRRAFDHQLSQALQE 234

Query: 124 --SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEF 180
                  LS++  D+D+FK  ND +GH  GD  +  ++  +      +     R GGEEF
Sbjct: 235 AVRLQSPLSVLMLDVDHFKLYNDTYGHVNGDACLRLIAGAITGCARRSNDVAARYGGEEF 294

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKE---PISTI 236
                 +    A  LA+ +R  +    +   S P S H+T+S G A     E       I
Sbjct: 295 GMILTHTDAAGALRLADAVRSAVAELGLMHLSSPTSAHVTVSVGAATFEPGEVPMSSDDI 354

Query: 237 IYRADQALYVAKKSGRNR 254
           ++ AD ALY AK+ GR+R
Sbjct: 355 VHDADSALYRAKQRGRDR 372


>gi|157145666|ref|YP_001452985.1| hypothetical protein CKO_01413 [Citrobacter koseri ATCC BAA-895]
 gi|157082871|gb|ABV12549.1| hypothetical protein CKO_01413 [Citrobacter koseri ATCC BAA-895]
          Length = 410

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 73/174 (41%), Gaps = 11/174 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
            + E       + + +  D L+GLLN   F       +          S++  D D FK 
Sbjct: 238 DITEQKRLEQELERAALHDALTGLLNRRQFYLLTEQNHTPHLSMTMDYSLLLIDTDRFKS 297

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH  GD+V+  L+  L         V R GGEEF      +S + A  LA  +R 
Sbjct: 298 INDLYGHLKGDEVLCALARTLEARARKGDLVFRWGGEEFVLLLPRTSLEVALNLAESIRA 357

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +    I          T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 358 AVAKVCIPGLP----RFTVSIGVARHESNESIDELFKRVDDALYKAKNDGRNRV 407


>gi|21242098|ref|NP_641680.1| sensor histidine kinase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21107507|gb|AAM36216.1| sensor histidine kinase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 569

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 8/170 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNF 146
                 + + S  D L+GL N      SL             L ++  D+D+FKQ ND+ 
Sbjct: 389 LRLRESLRRQSIRDALTGLYNRRYLEESLSHELARCARRGLPLPVLMLDVDHFKQFNDSQ 448

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD ++A + + L+          R GGEEF      +  +EA  +A  +R  I   
Sbjct: 449 GHAGGDLLLAAVGELLLTRLRAEDVACRYGGEEFTVLLPEADGEEAMRVAEQIRGYIAAL 508

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
            ++  +     +T S G+A      E  +++I +AD ALY AK +GRNRV
Sbjct: 509 AVSDGARALPKVTASIGVASFPVDGEQGASLIQKADAALYRAKHAGRNRV 558


>gi|89094353|ref|ZP_01167294.1| regulatory component of sensory transduction system
           [Oceanospirillum sp. MED92]
 gi|89081412|gb|EAR60643.1| regulatory component of sensory transduction system
           [Oceanospirillum sp. MED92]
          Length = 872

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 11/190 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
            I  + + E      +I   +  D L+ L N S  +  L          N+ L+++F D+
Sbjct: 420 LIIKNDITERKEQEQKIIHQAHFDSLTELPNRSLAMDRLAQGVIKASRNNDVLALMFIDL 479

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FK +ND+ GH +GD+++   S +L         V RLGG+EF     G  S ++   +
Sbjct: 480 DGFKNVNDSLGHDIGDQLLIHASKRLSDSVRNTDTVARLGGDEFLIIMEGLVSRRDCLPV 539

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
            N +++    +  NI S   + +T S G++      +    ++  AD A+Y AK++GRN 
Sbjct: 540 LNKIKESF-GAPFNIGSN-ELKVTPSIGLSLFPDDGQDGDVLLRNADLAMYQAKEAGRNT 597

Query: 255 VVCFSDIENN 264
              F+   + 
Sbjct: 598 HHFFNQEMHK 607


>gi|119775755|ref|YP_928495.1| cyclic nucleotide phosphodiesterase [Shewanella amazonensis SB2B]
 gi|119768255|gb|ABM00826.1| diguanylate cyclase [Shewanella amazonensis SB2B]
          Length = 626

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 65/200 (32%), Positives = 101/200 (50%), Gaps = 9/200 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA------ 117
           IL EN  L  + I + +++  I      +       + +L+  D L+ L N         
Sbjct: 424 ILQENKFLQFVIIVMGIIILSIVSIFAYKQAQRSKLMERLALTDHLTQLANRRHTYHEGE 483

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
            +         LS++ FD D+FK+IND+FGH VGDKV+  ++            VGR+GG
Sbjct: 484 IMFRSARPGSPLSVILFDADHFKKINDHFGHDVGDKVLIAMAQSSAGQMRRGDLVGRIGG 543

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPIST 235
           EEF A    ++ ++A  +A  LR  IE + ++    P + ++ISAG+A       +  S+
Sbjct: 544 EEFLALLPHTTLEQAVEIAERLRLTIETTDLS-EVAPGLGMSISAGVATLDSSRDKNFSS 602

Query: 236 IIYRADQALYVAKKSGRNRV 255
            + RAD ALY AK +GRNRV
Sbjct: 603 FLNRADHALYRAKHNGRNRV 622


>gi|212639481|ref|YP_002316001.1| signal transduction diguanylate cyclase [Anoxybacillus flavithermus
           WK1]
 gi|212560961|gb|ACJ34016.1| Signal transduction diguanylate cyclase [Anoxybacillus flavithermus
           WK1]
          Length = 371

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 84/274 (30%), Positives = 124/274 (45%), Gaps = 25/274 (9%)

Query: 8   FLSIWLC-HEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPF-------- 58
            +++WL  H+ +++        I        F    +++       I L+P+        
Sbjct: 100 LVAVWLSKHDPHMQPLWIACIGIGVLFLIPPFAGIFMYLLTWIASSIVLSPYDEFARMEW 159

Query: 59  ---YGLEYILVENLSLVI-ISITISLLLGYISGSIL----KELFISYNRISQLSRIDCLS 110
                +   L E L  V  I I  S    Y    ++      L    N +  L+  D L+
Sbjct: 160 PIRPSIHTALPEGLGFVASIIIWRSYTKNYKQHMLMDIEQTRLIEKNNSLQALAIQDPLT 219

Query: 111 GLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           GLLN + F+  +        N++ SI+  DID+FK +ND FGHP GD+V+  LS  L+  
Sbjct: 220 GLLNRTRFVDLVRVQLHKQNNKEASILIIDIDFFKHVNDQFGHPAGDQVLKDLSAMLMHY 279

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
           F  P    RLGGEEF      +  ++A  LA  LR  I     +     +IHIT S GIA
Sbjct: 280 FPPPSLSARLGGEEFIIFLPNTHIEQARQLAEMLRGNIATFPFSYKH-HTIHITASFGIA 338

Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +    +       +ADQALY+AK++GRNRVV  S
Sbjct: 339 QAT--DSFQHSYSKADQALYIAKQNGRNRVVVIS 370


>gi|78778197|ref|YP_394512.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans
           DSM 1251]
 gi|78498737|gb|ABB45277.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans
           DSM 1251]
          Length = 770

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 10/179 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           + K++  + N +  LSR D L+ L N +  I  L           +K+SI+F D+D FK+
Sbjct: 330 LQKKVQTAANELEHLSRHDHLTNLPNKTLLIDRLEHSINVASKNGQKVSILFLDLDRFKE 389

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND + H VGDK++  +S +L  +      +GR GG+EF      S+E +   +  ++  
Sbjct: 390 INDTYNHEVGDKLLQDISRRLKKLIKEEDTIGRFGGDEFIIILNNSNETQTVEVVTNIMS 449

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFS 259
            +  S+    +   +H T S GI+           +I  AD A+Y AK +G+NR   + 
Sbjct: 450 AM--SEPFNVNKVKLHTTFSIGISIFPDDGNSRDILIRNADTAMYEAKSNGKNRYQFYD 506


>gi|304392630|ref|ZP_07374570.1| putative kinase/esterase protein [Ahrensia sp. R2A130]
 gi|303295260|gb|EFL89620.1| putative kinase/esterase protein [Ahrensia sp. R2A130]
          Length = 487

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 98/205 (47%), Gaps = 13/205 (6%)

Query: 64  ILVENLSLV-IISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           I   +L L+ +I + +S  LG++S      +  L  S +    L+  D L+GL N   F 
Sbjct: 264 IWRSSLPLIGVILLIVSSALGFLSYRHSKTISALQRSEDENRFLALHDALTGLPNRLQFD 323

Query: 120 SSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
            SL          + +I+  D+D FK +ND FGH  GD V+A +++++  V G      R
Sbjct: 324 RSLEGVISSGGIGRCAILCIDLDRFKAVNDTFGHQAGDAVLAEVANRITQVVGDTGMAAR 383

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHITISAGIAERCHKE-P 232
           LGG+EF       ++   A +    + II++    I   G S  I  S G+A        
Sbjct: 384 LGGDEFMVLLHDGADD--ASVVETSQTIIDSVSREIMFPGGSAFIGASIGVAHWPDDTST 441

Query: 233 ISTIIYRADQALYVAKKSGRNRVVC 257
             +II  AD+ALY AK+SGR RV  
Sbjct: 442 AKSIIRSADEALYQAKESGRGRVCL 466


>gi|222086220|ref|YP_002544752.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
 gi|221723668|gb|ACM26824.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
          Length = 355

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 8/183 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKL-SIVFFDIDYFKQIN 143
           + ++    +   +++  D L+ L N  AF   L           + ++V  DID+FK+IN
Sbjct: 162 MDQVRKELDEYKRIANTDALTRLSNRRAFDDRLAAVFDNQMARPVTALVLADIDHFKKIN 221

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           DN+GHPVGDK++A ++  +        FV R GGEEFA    G +  +A      +R+ +
Sbjct: 222 DNYGHPVGDKILATVASVIRANVRREAFVARTGGEEFALILEGYTPDDALATCERIRRAL 281

Query: 204 ENSQINISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E +    S     +  ITIS G+           +  +AD ALY AK +GRN    + + 
Sbjct: 282 EATPFKNSRTRVNYGPITISLGVCMASDATDPGELYGKADIALYSAKNAGRNCSYVYQNG 341

Query: 262 ENN 264
              
Sbjct: 342 MQK 344


>gi|85712024|ref|ZP_01043078.1| Signaling protein with a sensor domain and GGDEF domain [Idiomarina
           baltica OS145]
 gi|85694210|gb|EAQ32154.1| Signaling protein with a sensor domain and GGDEF domain [Idiomarina
           baltica OS145]
          Length = 518

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 12/184 (6%)

Query: 91  KELFISYNRISQL---SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           +++     ++++    S  D L+ L N +A    +           E +SI   DID+FK
Sbjct: 336 QQVHHYKQKLAEQKFKSLQDSLTKLPNRAALEERMRVEEQRFKRTKEPVSIAVLDIDFFK 395

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +INDNFGH  GDK +  ++  L        FV R GGEEF      +   +A        
Sbjct: 396 RINDNFGHSAGDKTLQVIASMLRKAVNESDFVCRYGGEEFVVLFPNTPIADAQARLEKAC 455

Query: 201 KIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + I N      S   I IT+S GIAE     + ++++   AD ALY AKK+GRN++V  S
Sbjct: 456 ERIRNIPFKFRS-EDIRITVSVGIAELQQVNQSLTSLFETADNALYEAKKTGRNKIVLAS 514

Query: 260 DIEN 263
            + N
Sbjct: 515 AVSN 518


>gi|327484213|gb|AEA78620.1| GGDEF domain protein [Vibrio cholerae LMA3894-4]
          Length = 323

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 112/258 (43%), Gaps = 29/258 (11%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           IW C       F P  F I+ S  F+   + +  I    + Y          + L +  +
Sbjct: 68  IWSC-------FVPILFYIFTSARFAFVTSCLFLIIQSNIIY----------WQLQQTGA 110

Query: 71  LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAF---ISSL 122
            +  S+ + L   YI   ++  ++    R     +  L+  D L+G  N  +        
Sbjct: 111 AISWSVLLHLCFAYIGIWVVAHVYEDNRRKIENSLLYLASRDPLTGAHNRLSLTTSFQHF 170

Query: 123 GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
             +N++  L ++  D+D+FK IND FGH  GDKV+   +     V G    + R+GGEEF
Sbjct: 171 ERFNDQTSLCLLVIDLDFFKSINDQFGHDTGDKVLIETTRLFAQVVGDNN-LYRIGGEEF 229

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                  S ++A  +   LR I+            + +TIS G+ E    + ++ ++  A
Sbjct: 230 CVTLFDQSLEQAGRVCERLRAIVSQHLFAFGE-KRVQVTISIGVCEYQAGDQLNDLLKFA 288

Query: 241 DQALYVAKKSGRNRVVCF 258
           D  LY AKK+GRN+V  F
Sbjct: 289 DMELYRAKKAGRNQVRLF 306


>gi|299831222|gb|ADJ55751.1| hypothetical protein [Clostridium sporogenes]
          Length = 562

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 110/238 (46%), Gaps = 14/238 (5%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
            I IA +  +  + +  I +      EY   +     +I   + +L  +  G  +K    
Sbjct: 126 GIIIACLASLIILIMDIICVPNLIVNEYFEQD-----LILAGVFILTAWPLGFYVKVESE 180

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148
              ++  L   D L+ + NH  F  +L          NE LS++F DIDYFK  ND +GH
Sbjct: 181 HIKKLESLVNKDGLTNVYNHRFFHDALSKEIIECEEKNEALSMIFIDIDYFKHYNDLYGH 240

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GDKV+  + + L         V R GGEEFA     +SE+EA  +A  +R+  E +  
Sbjct: 241 QKGDKVLKTIGEILKNNTREEDIVARYGGEEFAILLPSTSEEEAINIAEKIRRKTEYTYF 300

Query: 209 N-ISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDIENN 264
               + P+ ++T+S GI+   +K      +I  AD ALY AK   +NRV  ++ I + 
Sbjct: 301 EGEENQPNGNLTVSMGISVYPYKAKSDMELIKSADDALYRAKFFNKNRVEAYTSILDE 358


>gi|88704792|ref|ZP_01102505.1| protein containing EAL/GGDEF/PAS domains [Congregibacter litoralis
           KT71]
 gi|88701113|gb|EAQ98219.1| protein containing EAL/GGDEF/PAS domains [Congregibacter litoralis
           KT71]
          Length = 810

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S +  L      +  ++  D L+GL+N S F   L             L++ + D+D FK
Sbjct: 350 SDITPLKEHERELETIAHFDPLTGLVNRSLFEDRLYQAVATSERQGTFLALAYIDLDGFK 409

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDL 199
            +ND+FGH VGD+ +  ++D +         + R+GG+EF A      + E  A +   L
Sbjct: 410 LVNDSFGHAVGDRYLIAIADNMNEALRDTDTLARIGGDEFIALISDLDDPEGFAPVVERL 469

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +    S+  +  G  I ++ S GIA          +++  ADQA+Y AK+ G+NR   F
Sbjct: 470 LQA--TSKPVMLEGQEIPVSASIGIARFPLDGLEPGSLVRCADQAMYEAKRQGKNRFYVF 527

Query: 259 S 259
            
Sbjct: 528 D 528


>gi|148546432|ref|YP_001266534.1| diguanylate cyclase [Pseudomonas putida F1]
 gi|148510490|gb|ABQ77350.1| diguanylate cyclase [Pseudomonas putida F1]
          Length = 357

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 71/266 (26%), Positives = 119/266 (44%), Gaps = 14/266 (5%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFS----IFIATVIFIANIFLFYIGLTPFY 59
           SL         H   L S +  + M   ++       +F   +  +A +    + L P  
Sbjct: 80  SLMGGFWTAAMHFNPLPSVTVLSMMTMNNVAAGGKRMVFRGALAQLAGMLAAILLLGPGL 139

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
            L    ++  + + +     L LG++   +  +L     R+S LS  D L+GL NH A+ 
Sbjct: 140 QLIATPLQVYACLPMLALYPLALGWVCYQLAIKLGDHKRRLSALSLTDSLTGLFNHGAWK 199

Query: 120 SSLG------SYNEKLSIV-FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L          +  +++   DID+FK IND FGH VGD V+  LS +L          
Sbjct: 200 DLLQLKFQACRQRQGHAVIALIDIDHFKTINDTFGHVVGDCVLRQLSAELRRSLREGDQA 259

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-E 231
           GR GG+EF       SE +A  +   LR+ + + +   +  P + I++S G++      E
Sbjct: 260 GRYGGDEFCVILPEISEAQACQVMERLRERVSSYR--NTQLPHLRISLSIGLSPFEANLE 317

Query: 232 PISTIIYRADQALYVAKKSGRNRVVC 257
                + +AD+ALY+AK +GR++V  
Sbjct: 318 SPEHWLEQADKALYIAKHAGRDQVNF 343


>gi|46201882|ref|ZP_00054146.2| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 383

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 110/236 (46%), Gaps = 18/236 (7%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
           +     + F A       + L ++G    YG+  +       V IS+T+ ++L  ++G  
Sbjct: 151 WVYFLNAAFFALRGVSVGLDLEFMGGRLSYGITALATLWWLCVTISVTLCMVL--MAGER 208

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           L+E       ++  +  D L+G LN  AF       ++        LS++  D+D+FKQ+
Sbjct: 209 LQE------ELNHQASRDPLTGALNRRAFSGLAEKELARARRSGLPLSVLMMDLDHFKQV 262

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD  +         +  T     R GGEEF A   GS+  ++ ++A  LR I
Sbjct: 263 NDRLGHGGGDDALCLFVALAGRLLRTEDLFCRFGGEEFLALLPGSTAVQSLVVAERLRTI 322

Query: 203 I-ENSQINISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             E +  ++    S+   +T+S GIA+    + +  II RAD ALY AK  GRNR 
Sbjct: 323 FTEEAGQDVPGAASLPFAMTVSVGIAQLAEDDGLEEIIRRADAALYRAKDLGRNRC 378


>gi|271502301|ref|YP_003335327.1| hemerythrin-like metal-binding domain-containing diguanylate
           cyclase [Dickeya dadantii Ech586]
 gi|270345856|gb|ACZ78621.1| diguanylate cyclase with hemerythrin-like metal-binding domain
           protein [Dickeya dadantii Ech586]
          Length = 521

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 12/227 (5%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96
           +   TV  ++ I   ++ L+       +L  + +L II++     L +I+  ++      
Sbjct: 151 VLGLTVNILSLIHRLFLLLSSGNYPTSLLASSPALTIINVASLATLLFIANGLIMMTKDR 210

Query: 97  YNRISQLS-RIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
            + ++ L  R D L+G  N           +  L  Y   +S++ FD+D+FK++ND++GH
Sbjct: 211 SDHLNSLMLRQDNLTGCWNRIRVQEIARQEMDRLERYGYPVSLLMFDLDHFKKVNDDYGH 270

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+V+   +        T   +GR GGEEF A    +    A + A  +R+ +E+ + 
Sbjct: 271 ATGDEVLKAFAYIARTTLRTTDVLGRWGGEEFVAILPSTGIGGAILTAERIRQALESQRF 330

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                  + +T S GIA     +   + + RAD ALY AK +GRNRV
Sbjct: 331 ----SHGLQVTTSIGIAVCQSTDHWESWLSRADSALYRAKAAGRNRV 373


>gi|163749575|ref|ZP_02156822.1| GGDEF family protein [Shewanella benthica KT99]
 gi|161330685|gb|EDQ01622.1| GGDEF family protein [Shewanella benthica KT99]
          Length = 594

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 98/182 (53%), Gaps = 12/182 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           + +   +  QL++ D L+G+ N          +FI +  S  E  S++ FD+D+FK+IND
Sbjct: 403 MTVQKRKYKQLAQYDALTGIFNRGTAQNIAEYSFIKT-ASKREMFSVIMFDLDHFKRIND 461

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH  GD ++  +++ +     +     R G EEFA     + E +A I+A + R +I+
Sbjct: 462 NYGHGTGDWILKKVAEVINKASRSDDVFARFGSEEFALFLPNTDEAKAKIMAEEYRGLIQ 521

Query: 205 NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS-DIE 262
           + +   S G +  IT S G++     +  +  +++RAD A+Y +K+ GRN V  +  +IE
Sbjct: 522 SIETRFS-GHNFAITASFGVSTSSEDDLSLDPLLHRADIAMYHSKEQGRNCVTLYKPEIE 580

Query: 263 NN 264
            +
Sbjct: 581 QS 582


>gi|146305359|ref|YP_001185824.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas mendocina ymp]
 gi|145573560|gb|ABP83092.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas mendocina ymp]
          Length = 612

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 10/177 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           E      ++ +LS++D L+GL N   F          L      L+++  DID+FK  ND
Sbjct: 431 ERLQLEAQLQRLSQLDGLTGLYNRRYFDQQLPAELRRLRRSGAPLALLMLDIDHFKAYND 490

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GH  GD  +  +S  L            R GGEEFA     +       +A  + + I
Sbjct: 491 ALGHLAGDDALRKVSSVLRESLQREGDVACRYGGEEFAIILANTGLDGGEHVAARIHEAI 550

Query: 204 ENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +  I   + P   +++S G+        E    ++ R+DQALY AK  GRN    +
Sbjct: 551 ASLAIVHPASPLGRLSLSIGLTVLDPVSDEQPGELVSRSDQALYSAKHRGRNCTYLW 607


>gi|330937483|gb|EGH41440.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 763

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 88/183 (48%), Gaps = 10/183 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYF 139
            ++L +L  +   + Q++  D L+ L+N   F        ++       L+++F DID+F
Sbjct: 273 NALLTQLDQARVSLQQVAHYDPLTNLINRRGFNQIFAEKLQEHTYTKGMLAVMFLDIDHF 332

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND+ GH  GD+++  +++++         V R GG+EF         +EA  LA+ +
Sbjct: 333 KRINDSLGHDAGDELLKVIAERIRSATRAQDVVARFGGDEFCILLSIPDYEEARHLAHRV 392

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              ++ +     +G  + +T S GIA           ++  AD ALY +K  GRN V  F
Sbjct: 393 MHKMKETI--ALAGRRMVMTTSIGIAVFPRDGSTCDELLKHADLALYQSKDKGRNGVNFF 450

Query: 259 SDI 261
           +  
Sbjct: 451 NPA 453


>gi|297623029|ref|YP_003704463.1| diguanylate cyclase [Truepera radiovictrix DSM 17093]
 gi|297164209|gb|ADI13920.1| diguanylate cyclase [Truepera radiovictrix DSM 17093]
          Length = 192

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYN---EKLSIVFFDIDYFKQIN 143
           +       ++ + +  D L+G+ N     +   S L           ++  DID+FK +N
Sbjct: 19  QRATERAAQLERQAFFDALTGVANRWRAEALLASRLADLRCGAPPFGVLVVDIDHFKGVN 78

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGD V+  ++ QL     +   + R GGEEF   A  + E E A L   LR+ +
Sbjct: 79  DRYGHGVGDAVLREVAAQLSRHVRSGDTLARWGGEEFVVLAPAAGEGELARLGERLRQAV 138

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             + +   +G +  +T+S G A    K+  +T+I RAD+ALY AK++GRNR V 
Sbjct: 139 AAAPL---AGHA--VTVSVGGACATRKDVAATLIARADRALYRAKRAGRNRTVV 187


>gi|322421600|ref|YP_004200823.1| diguanylate cyclase [Geobacter sp. M18]
 gi|320127987|gb|ADW15547.1| diguanylate cyclase [Geobacter sp. M18]
          Length = 428

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 69/265 (26%), Positives = 115/265 (43%), Gaps = 38/265 (14%)

Query: 30  YFSIFFSIFIATVIFIANIF----LFYIGLTPFYGLEYILVENLSLVII-----SITISL 80
           Y+S    + +    F++        + +  T  Y +  I   N  + I+     SI  ++
Sbjct: 144 YYSGILLLIMGAFTFVSLRLRYAVSWALATTLVYEVVAIFANNTDVNILIQNTFSIVATI 203

Query: 81  LLGYISGSIL------------------KELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           ++G  S S++                  ++L  +   + +LS  D L+ L N   F   L
Sbjct: 204 IIGAFSNSLMENYLRRDFLNANLLEYENRQLQKATLELRRLSISDALTNLGNRRHFEVML 263

Query: 123 GSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGR 174
                        +S+V  DID+FK  NDN+GH  GD  +  +++++      P     R
Sbjct: 264 DQEWLRATRSESPISLVLLDIDFFKNFNDNYGHQAGDSCLKIVAEEIGGFARRPADTAAR 323

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHITISAGIAERCHKEPI 233
            GGEEF     G    +AA +A   R+ +E+ +I    S  S  +T+SAG+A        
Sbjct: 324 YGGEEFVLLLPGIDLADAATIAETCRQAVESLEIPHCHSAASNVVTVSAGVASMVPDRDA 383

Query: 234 S--TIIYRADQALYVAKKSGRNRVV 256
           +   ++  AD+ALY AK  GRNRV+
Sbjct: 384 NRGQLVEAADKALYRAKLKGRNRVI 408


>gi|237748638|ref|ZP_04579118.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Oxalobacter formigenes OXCC13]
 gi|229380000|gb|EEO30091.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Oxalobacter formigenes OXCC13]
          Length = 999

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 56/211 (26%), Positives = 91/211 (43%), Gaps = 12/211 (5%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL- 122
           I    +S  +I     L + +I    + E   +   + + +  D +SGL N   F   L 
Sbjct: 500 IFPVEISSRVIETDGRLFVQFII-RDISEKKKAEEMVWRHANYDQISGLPNRRMFTEKLF 558

Query: 123 ------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                    +  ++++F D+D+FK +ND  GH VGD ++   SD+L V       V RLG
Sbjct: 559 FETRKAQRSDASVALMFLDLDHFKDVNDTMGHGVGDCLLKEASDRLRVCVRETDTVARLG 618

Query: 177 GEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIS 234
           G+EF        + ++   +A  +    E S+     G S+HI+ S GI           
Sbjct: 619 GDEFTVIVSDIDDFKDVERVAQCILD--ELSEPFTLEGQSVHISASIGITFFPQDAKDTH 676

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            ++  ADQA+Y AK  G N+   F+      
Sbjct: 677 DLMKNADQAMYAAKSLGGNQYHYFTPSMQEA 707


>gi|170692794|ref|ZP_02883956.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M]
 gi|170142450|gb|EDT10616.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M]
          Length = 647

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 103/241 (42%), Gaps = 13/241 (5%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           IF+A  I      L  I +      ++  L +    ++ +   S+ +  +    ++E   
Sbjct: 130 IFVAAPIIHNGQLLGSIVIVATTEAIKMQLAQYGCFLVGASLCSVWIASLVMRRMRERVS 189

Query: 96  SYNR-ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147
              + +  L+  D L+ L N  AF   L +        +++++++  D+D FK +ND  G
Sbjct: 190 RAEKDLEYLASTDPLTDLPNRRAFYDELKARLHKAHAADKRVALMMVDLDNFKIVNDTLG 249

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKIIENS 206
           H  GD+++  ++D L  V      V R+GG+EFA      +S   A   A  + + +  S
Sbjct: 250 HGAGDELLKQVADALRNVVRPNDLVSRIGGDEFAVVIGPDASRVRARATAGRIARNL--S 307

Query: 207 QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           +  I  G    +T S G +        ++ ++  AD ALY AK  G++  V F       
Sbjct: 308 RPFILHGSDSVVTASVGFSVYPEDTGEMAELVSNADIALYSAKSRGKSIAVEFQSEMTAE 367

Query: 266 C 266
            
Sbjct: 368 A 368


>gi|146311798|ref|YP_001176872.1| diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638]
 gi|145318674|gb|ABP60821.1| diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638]
          Length = 709

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 55/212 (25%), Positives = 102/212 (48%), Gaps = 11/212 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKE-LFISYNRISQLSRIDCLSGLLNHSAFISS 121
           ++    L L+ I + ISL+  +     L + L     ++   +R D L+GL N      S
Sbjct: 218 WVSSTTLVLLGIMLIISLVDSHFRTQRLTDNLRQLNKQLELQARFDALTGLANRHQMDIS 277

Query: 122 LGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L           ++ +++F DID+FK IND +GH VGD+++  ++ ++       M + R
Sbjct: 278 LQDCLHTSLLNKKQFAVMFLDIDHFKLINDAWGHQVGDELLINVAQRITARLVPGMTLAR 337

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           LGG+EF        +++   L+  L   I   +     G +I++T+S G++    H E +
Sbjct: 338 LGGDEFILLVPDCDDEKITTLSMTLLDEIR--RPFAIGGHAINVTLSVGVSLYPQHGETL 395

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             + ++AD A+Y  K+ GRN    +    + +
Sbjct: 396 HELKFKADAAMYHIKQEGRNGWAIYRPEMSKS 427


>gi|148549159|ref|YP_001269261.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida F1]
 gi|148513217|gb|ABQ80077.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida F1]
          Length = 818

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 85/189 (44%), Gaps = 14/189 (7%)

Query: 83  GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLS 130
           G +SG +L    ++  R     +S  +  D L+GL N   F       ++ L     + S
Sbjct: 348 GQVSGIVLVLHDMTQERQYIANLSWQATHDALTGLANRREFEYRLEQALNDLARQAGRHS 407

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F D+D FK +ND  GH  GD+++  +   L         + RLGG+EF          
Sbjct: 408 LMFLDLDQFKLVNDTCGHAAGDELLRHICAVLQSGLREGDTLARLGGDEFGVLLENCPPD 467

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKK 249
           +A  +   LR+++++    +  G     T+S G+         +   +  AD A Y+AK+
Sbjct: 468 QAERIGEQLRQMVQSLHF-VWKGRPFVTTVSIGLVHMAQAPGTLEASLRAADMACYMAKE 526

Query: 250 SGRNRVVCF 258
            GRNRV  +
Sbjct: 527 KGRNRVQVY 535


>gi|186681071|ref|YP_001864267.1| diguanylate cyclase [Nostoc punctiforme PCC 73102]
 gi|186463523|gb|ACC79324.1| diguanylate cyclase [Nostoc punctiforme PCC 73102]
          Length = 340

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 101/201 (50%), Gaps = 13/201 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ 118
           L  N  L++  +T+    G       ++L  + + +S ++  D L+ L N  A       
Sbjct: 128 LTANHGLILAQLTV----GLRKAQKYRDLIRTNDMLSAIALADSLTELNNRRALEWDLPR 183

Query: 119 -ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
            I    +    LS++  D+D+FK++ND  GH VGD+++  L  +L           R GG
Sbjct: 184 QIQRARTQKTSLSLIILDVDHFKKVNDTHGHLVGDRILQILCQRLRHNLRCQDTAFRYGG 243

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--IST 235
           EEF      ++++EA ++A  L +++ +    +S+  +I+ITIS G A     +     +
Sbjct: 244 EEFVILLANTTDEEALLVARRLNRVVSDEPFALSNKLTINITISLGTASLQADDDEQGES 303

Query: 236 IIYRADQALYVAKKSGRNRVV 256
           ++ RADQ L  AK +GRNRV+
Sbjct: 304 LLNRADQCLLQAKNAGRNRVI 324


>gi|327398277|ref|YP_004339146.1| diguanylate cyclase [Hippea maritima DSM 10411]
 gi|327180906|gb|AEA33087.1| diguanylate cyclase [Hippea maritima DSM 10411]
          Length = 627

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 9/179 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           E     +++ + +  D L+GL N             ++   N    I+  D+D+FKQ+ND
Sbjct: 444 EAKRLLSQLKESTMRDPLTGLYNRRFLDEFAATFSATVKRRNTLAGILMCDVDFFKQVND 503

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGD+V+  +   +           R GGEEF        E+    +A  +R  +E
Sbjct: 504 VYGHNVGDEVLRGVVRAIAKSIRESDIAVRFGGEEFLVLLQDVDEKSVLEIAERIRSDVE 563

Query: 205 NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            ++I +  G  I  T+S G++        +   I  +D A+Y AK++GRNRVV F    
Sbjct: 564 KTEITV-QGNVIKKTLSIGVSIFPKDSKNLWQCIKFSDVAMYKAKEAGRNRVVRFEPDM 621


>gi|326796702|ref|YP_004314522.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326547466|gb|ADZ92686.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 508

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 11/180 (6%)

Query: 87  GSILKELFISYNRISQ---LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
             + K+     +R+ Q    +  D L+ L N +A++ ++          N+ L +   DI
Sbjct: 326 NRMEKDATNMRSRMQQKIAEAMTDSLTNLPNRAAYLETILPLIVNSKKTNKPLCLAVCDI 385

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND +GH  GDKV+  +  Q++   G    + R GGEEF      S+ +E  +  
Sbjct: 386 DHFKKINDTWGHLAGDKVLRLVPKQILSAVGKEDLLFRYGGEEFVLLIPASTVEECHVKV 445

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R  +E +  N+  G  + +TIS G+      +   +I  RAD+ LY AK+SGRN+VV
Sbjct: 446 EAVRASVEKTPFNV-EGQPVSVTISIGMDYLNANDDHESIFARADKHLYEAKESGRNKVV 504


>gi|332160221|ref|YP_004296798.1| hypothetical protein YE105_C0597 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664451|gb|ADZ41095.1| hypothetical protein YE105_C0597 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 448

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 72/260 (27%), Positives = 117/260 (45%), Gaps = 32/260 (12%)

Query: 31  FSIFFSIFIAT---VIFIANIFLFYI--GLTPFYGLEYILVENLSL--VIISITISLL-- 81
            +  F   I +    IF++   LF I   L     + + +  N S    + S  I+ L  
Sbjct: 170 LAGLFVCLILSTLVAIFLSRRMLFGIIGSLNRITEVAHNVSRNRSFGQRVPSAQIAELNE 229

Query: 82  LGYISGSILKELF-------ISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEK 128
           L +    +L+EL           + ++  +  D L+GL N + F   L         NE 
Sbjct: 230 LSHDFNGLLEELEVWQKHLTQENDSLAHRAAHDSLTGLANRAYFEGRLSRTLSDCKTNEH 289

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGS 187
           ++++F D D FK+INDN+GH  GD V+  ++D+L  +      V RLGG+EFA       
Sbjct: 290 VAVLFLDGDRFKEINDNYGHAAGDVVLTTIADRLRALLRESDLVARLGGDEFAILLAPIY 349

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYV 246
           +  +  I+AN++ K +    I +  G  I  ++S G+A    H +    ++ RAD+A+Y 
Sbjct: 350 NTDDVLIIANNIIKSM-TQPITLPDGSEIITSLSIGVAIYPDHAQTPDELLQRADEAMYQ 408

Query: 247 AKKSGRNRVVCFSDIENNTC 266
           AKK        F   E  T 
Sbjct: 409 AKKG-------FRPCEQGTA 421


>gi|319787671|ref|YP_004147146.1| response regulator receiver modulated diguanylate cyclase
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317466183|gb|ADV27915.1| response regulator receiver modulated diguanylate cyclase
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 429

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 8/164 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+GL N   F+              + L++V  D+D+FK +ND +GH  GD
Sbjct: 264 LQDLATRDFLTGLPNRRHFLDQAERLVPRMRDVRQPLAMVMLDLDHFKHVNDTWGHETGD 323

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  ++  +         + R GGEEF     G   +E       LR  +E+ ++ +  
Sbjct: 324 RALRAVASTISAHARPQDHIARFGGEEFCMLLPGLEGRELHEHLEKLRLRVEDLRVPVDQ 383

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  + ++IS G       + + +++  AD+ LY+AK  GRN+V+
Sbjct: 384 G-ELRLSISIGACNARVGDTLHSLLAEADRRLYLAKAGGRNQVI 426


>gi|291614820|ref|YP_003524977.1| diguanylate cyclase with PAS/PAC sensor and hemerythrin-like
           metal-binding domain [Sideroxydans lithotrophicus ES-1]
 gi|291584932|gb|ADE12590.1| diguanylate cyclase with PAS/PAC sensor and hemerythrin-like
           metal-binding domain [Sideroxydans lithotrophicus ES-1]
          Length = 784

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 10/180 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
             + E  ++   I+ ++  D L+GL N +     L     +       ++++F D+D FK
Sbjct: 465 QDITERKLTEKTINFMAYHDKLTGLPNRALLFDRLAQAMSQAKRDAKYVALLFADLDGFK 524

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
            +ND +GH  GD V+   + + +        V R GG+EFA       +  +A  +A  +
Sbjct: 525 AVNDLYGHEAGDNVLKMAAQRFLACVRAVDTVARFGGDEFAIILGNLDDPLQAKGVAEKI 584

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +    S I +S G    +  S GI+    H   +  ++  ADQA+Y +K+ G+N    +
Sbjct: 585 VQAFAQS-ITLSDGRECTVGASVGISIYPDHGSAMDNLMTAADQAMYESKRHGKNTYTFY 643


>gi|229153576|ref|ZP_04281754.1| GGDEF domain protein [Bacillus cereus m1550]
 gi|228630180|gb|EEK86831.1| GGDEF domain protein [Bacillus cereus m1550]
          Length = 352

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 16/226 (7%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96
           +++ T I    I   YI L          +  + L +IS  I+  + +IS + + +    
Sbjct: 132 VWLHTYILSILIPALYIWLIK-------EIHIVGLYLISSIITGYITFISANYVLQSNEL 184

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
           + R+ Q + ID L+GL N   F   +  +       N+   ++  DID+FK +ND +GHP
Sbjct: 185 FQRMKQYATIDALTGLGNVRQFDLEMNRHISNKNMKNDSFCLLLIDIDHFKYVNDTYGHP 244

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+  +   L      P    R GGEEFA            +    +R  +E+    
Sbjct: 245 AGDEVLKQVGCILRETSQFPDLAFRKGGEEFALLIPNKGLAYGILTGEQIRTAVESHSFQ 304

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +     I IT+S G++E   +      I  AD ALY +K++GRN+V
Sbjct: 305 LLDETKIKITVSVGVSEY--EGSPEQFIQAADDALYYSKRNGRNKV 348


>gi|218893186|ref|YP_002442055.1| hypothetical protein PLES_44711 [Pseudomonas aeruginosa LESB58]
 gi|254245134|ref|ZP_04938456.1| hypothetical protein PA2G_06021 [Pseudomonas aeruginosa 2192]
 gi|126198512|gb|EAZ62575.1| hypothetical protein PA2G_06021 [Pseudomonas aeruginosa 2192]
 gi|218773414|emb|CAW29226.1| hypothetical protein PLES_44711 [Pseudomonas aeruginosa LESB58]
          Length = 735

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 10/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
             + +      ++ +++  D L+GL N  AF   LG           +L++++ D+D FK
Sbjct: 555 RDVSDQIAYQQQLLEMAYRDPLTGLGNRKAFDEQLGQALLRAGSGGSELALLYLDLDRFK 614

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND FGH +GD ++  +++++      P    RLGG+EFA     S E     LA  L 
Sbjct: 615 EVNDRFGHDIGDALLRTVAERVRSTLRQPDKAYRLGGDEFAVLLEDSQENNPQRLAERLL 674

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +    I ++      +T S GIA    H      ++  AD A+Y AK+  RN    +
Sbjct: 675 AAL-VQPIALNGERIDFVTPSIGIALYPRHAGDAEGLVRAADSAMYEAKRQ-RNHYCLY 731


>gi|94499806|ref|ZP_01306342.1| sensory box/GGDEF/GAF/EAL domain protein [Oceanobacter sp. RED65]
 gi|94428007|gb|EAT12981.1| sensory box/GGDEF/GAF/EAL domain protein [Oceanobacter sp. RED65]
          Length = 1215

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 84/186 (45%), Gaps = 12/186 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            +  +     ++  L+  D L+ L N +     +             L ++F D+D FK 
Sbjct: 752 DITNIKSHQEQLENLANYDSLTQLPNRTLLTDRMQQAMALAKREGHLLVVIFIDLDGFKP 811

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLR 200
           +ND +GH VGD+++   S ++ ++  +   +GRL G+EF        + +    L   + 
Sbjct: 812 VNDRYGHDVGDRLLIAFSKRVSLLLRSTDTLGRLAGDEFVTLLPNVQQFENCEPLLERIL 871

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCF 258
             +E  +  I     + I+ S G+      E +    ++ ++DQA+Y+AK+ G+NR   F
Sbjct: 872 SAVE--KPFIIDEHQLKISASMGVTVYPQAEDLDADQLLRQSDQAMYLAKQDGKNRYHLF 929

Query: 259 SDIENN 264
              ++ 
Sbjct: 930 DATQHQ 935


>gi|322419913|ref|YP_004199136.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M18]
 gi|320126300|gb|ADW13860.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M18]
          Length = 311

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 11/194 (5%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEK 128
           + + L  G     +  EL  +   +   +  D L+GL NH   I       +      + 
Sbjct: 111 LRVRLRAGRRIIELQNELLAAREVLRHKASHDSLTGLWNHEEIIGILGQELARAKREEKC 170

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +SI+  D+D FK IND +GH  GD V+   + ++        ++GR GGEEF        
Sbjct: 171 VSIIMADLDRFKVINDTYGHMAGDVVLRSTALKMHSTMRHYDYIGRYGGEEFLVILPECC 230

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALY 245
            + AA  A  LR  +    ++   G  I +TIS G+A     +      +++  AD ALY
Sbjct: 231 LECAAAFAERLRLRVCRDLVDTPEGM-IPVTISLGVASSATGQQMPDAESLVKAADAALY 289

Query: 246 VAKKSGRNRVVCFS 259
            AK+ GRNRV   S
Sbjct: 290 QAKEHGRNRVEIAS 303


>gi|192362208|ref|YP_001983829.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107]
 gi|190688373|gb|ACE86051.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107]
          Length = 638

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 62/287 (21%), Positives = 112/287 (39%), Gaps = 31/287 (10%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFS-----IFIATVIFIANIFLFYIGL 55
           ++ SL  F   W  +          + ++ F+         + + ++     + + Y+  
Sbjct: 87  ISLSLMLFYLAWTGNGIRGSVPLGFSGILLFAALLGSRRQLLILMSLAICICLLIGYLNQ 146

Query: 56  TPFYGLEYILVENLSLVIISITI-------SLLLGYISGSILKELFISYN-------RIS 101
              + +  +L   L+   I+  +       +L+L       L EL             I 
Sbjct: 147 AGIH-VNQVLPTTLATGAIAAVVLGVIGFSALMLAEDYRQALTELERENQLVKSAKDHIE 205

Query: 102 QLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            L+  D L+ L N            +      +   I+F D+D  K IND+ GH  GD +
Sbjct: 206 HLALHDPLTNLPNRSMAQAGFREIYARTKRQQQLFGIIFIDLDNLKPINDSLGHQAGDHI 265

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSG 213
           +  ++ +L+        V R GG+EF        S  +A+  + D+ ++I  SQ  +   
Sbjct: 266 LKEVAQRLISYTRDETLVCRYGGDEFLVFLPNIQSADDASDASVDILQLI--SQTYLYRN 323

Query: 214 PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I  T S GIA      + +  +I +AD A+Y +K SGRN    F+
Sbjct: 324 IDIFCTCSIGIALAPQDGDNLDELIKKADIAMYHSKDSGRNSFRFFN 370


>gi|157736990|ref|YP_001489673.1| GGDEF/PAS domain-containing protein [Arcobacter butzleri RM4018]
 gi|157698844|gb|ABV67004.1| GGDEF/PAS domain protein [Arcobacter butzleri RM4018]
          Length = 463

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 64/180 (35%), Positives = 90/180 (50%), Gaps = 11/180 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           EL+     + Q + ID L+G+ N   F                 LSI+  DID FK+IND
Sbjct: 284 ELYSMAQTLEQQASIDILTGIFNRMKFEEFFDLEVQKAKIQKNPLSIILLDIDDFKRIND 343

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD+VI  +S+ L         + R GGEEF      +S ++A I+AN+LR+II 
Sbjct: 344 TFGHDEGDEVIKSISNLLTKNVRGTDTLSRWGGEEFVILLPNTSLEQAKIVANNLRRIIF 403

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
               N+S      IT S G+A   +++    +  R D+ LY AK SG+N +V   D  NN
Sbjct: 404 EHDFNVSQKK---ITCSFGVAIYNYEDTKEKLFKRVDKILYKAKNSGKN-IVLGEDELNN 459


>gi|304396063|ref|ZP_07377945.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pantoea sp. aB]
 gi|304356432|gb|EFM20797.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pantoea sp. aB]
          Length = 661

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 16/189 (8%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNE-KLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A        L      +  +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRVLANTDTVTGLPNRNAIHQQISLALERAGHDETGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA----ILA 196
           ++ND +GH  GD+++  +S  ++   G    +GRLGG+EF   A  +S+         + 
Sbjct: 279 KVNDAYGHMFGDQLLQAVSLAILSCLGKDQTLGRLGGDEFVVLAEHTSQAALEAMSSRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             LR+      I + SG       S GIA    H E   ++I  AD A+Y AK++GR + 
Sbjct: 339 ERLRQPFRIGLIEVYSG------CSIGIAFAPLHGEDRESLIRNADTAMYHAKENGRGKF 392

Query: 256 VCFSDIENN 264
             F+   N 
Sbjct: 393 CVFAAEMNQ 401


>gi|167590560|ref|ZP_02382948.1| diguanylate cyclase [Burkholderia ubonensis Bu]
          Length = 238

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 9/186 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFF 134
             I    +     +   I  L+R D L+GL N                  +    ++++ 
Sbjct: 43  AVIIVEDVTARRRAEMHIRHLARHDALTGLPNRHELHAELKRMLARRTRRHGLAPAVMYL 102

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND FGH  GD V+  ++ +L         V R+GG+EF  A   ++ Q  + 
Sbjct: 103 DLDGFKAINDRFGHHAGDDVLTQVAARLSETLPQGELVARIGGDEFVVAIDDTTMQACSA 162

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            A  + + I ++   +S G ++ + IS GIA     +    +I  AD ALY AK SG+  
Sbjct: 163 QAAQIIRKI-SAPYTLSIGETVSLGISIGIALDRDCDAPEELIRHADSALYEAKSSGKGI 221

Query: 255 VVCFSD 260
              +S+
Sbjct: 222 YRFYSN 227


>gi|39936049|ref|NP_948325.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009]
 gi|39649903|emb|CAE28425.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris
           CGA009]
          Length = 383

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 71/255 (27%), Positives = 118/255 (46%), Gaps = 14/255 (5%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL 69
            + LC      +   H  ++   +F+++ +  + F     +F +G++P  G   +  +++
Sbjct: 131 GLLLCVAALRLAHLRHGRVVDRILFWTLLLFGLHFFPRT-VFTVGVSPPSGGPLVFADSV 189

Query: 70  SLVIISITISLLLGYISGSI----LKELFISYNRISQLSRIDCLSGLLNHSAFISS---- 121
               + +++++L   ++ +I    + +L     R   L   D L+GLLN   F       
Sbjct: 190 FWQTLQLSLAVLGAALAMAILAAAVSDLIDDLRRERDL---DHLTGLLNRRGFEEEIAAP 246

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
           +    E  S++  D+D+FK IND FGH VGD V+  +   L         VGR GGEEFA
Sbjct: 247 MRRAPEGASLILCDVDHFKSINDTFGHDVGDVVLKEIGAILRKTARKGDLVGRWGGEEFA 306

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                +S  +A   A  LR+ I NS+I         +T S G+A        + +   AD
Sbjct: 307 VFLPDASLSDATECAERLRQTIANSRIPGLDTR--PVTASFGVATIREAGDWTALYKLAD 364

Query: 242 QALYVAKKSGRNRVV 256
             LY+AK SGR+R V
Sbjct: 365 SRLYLAKASGRDRTV 379


>gi|309792653|ref|ZP_07687106.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oscillochloris trichoides DG6]
 gi|308225281|gb|EFO79056.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oscillochloris trichoides DG6]
          Length = 717

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 91/215 (42%), Gaps = 14/215 (6%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
            ++L   L++   +  +  + G  S + +     +  ++   +  D L+GL N   F+  
Sbjct: 241 RWVLCRGLAVWDENDQVLRIAG--SQTDISLRRAAEQQLQHDALHDLLTGLPNRGLFLDR 298

Query: 122 LGSY--------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           L             + +++F D+D FK IND+ GH  GD+++  ++ +++        V 
Sbjct: 299 LERAITISRRHPERRFAVLFIDLDRFKTINDSLGHTAGDQLLIAVAQRILGCLRPSDTVA 358

Query: 174 RLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EF       ++ Q    +   +   I    I +    +I  T S G+        
Sbjct: 359 RIGGDEFTILIEDIADFQMIQAIVERIHASIAE-PIQLGGHRTIS-TASIGVTTSDLQYT 416

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             + +I  AD A+Y AK  G+ R V F+   +   
Sbjct: 417 SATEMIRDADTAMYHAKMGGKARHVIFTPAMHAQA 451


>gi|152994649|ref|YP_001339484.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150835573|gb|ABR69549.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 320

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 118/244 (48%), Gaps = 21/244 (8%)

Query: 36  SIFIATVIFIA---NIFLF-YIGLTPFYGLEYILVENLSLVIISIT------ISLLLGYI 85
            I + T IFI+      LF +    P  G+   + +N++L  I+        + +++  +
Sbjct: 76  VIALRTSIFISWEQRPHLFPFKSYRPITGMADKMYQNVALRPITNADGTVKYVCMVVYDV 135

Query: 86  S--GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
           +   +  + L  +  ++  LS++D L+ L N  +    L        S     S+V  DI
Sbjct: 136 TDVATNKESLSNANRKLDFLSKMDPLTHLYNRGSVDKKLKSVFDAFASRGGSHSLVMADI 195

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK++ND +GHP GD V+  +S  L        FVGR GGEEF      +    A    
Sbjct: 196 DYFKKVNDQYGHPAGDLVLQAVSKVLGSSIRKTDFVGRYGGEEFVILLPNTDASGALFFC 255

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRV 255
             +RK I + +I  ++   I +T+S G++E    + +    + R+D+ALY AK +GRN+ 
Sbjct: 256 ESVRKKIADLKIKTAND-EISVTMSFGVSEASRSDKVPCDWLGRSDEALYKAKGNGRNQS 314

Query: 256 VCFS 259
           V +S
Sbjct: 315 VVYS 318


>gi|221135144|ref|ZP_03561447.1| diguanylate cyclase with PAS/PAC and GAF sensors [Glaciecola sp.
           HTCC2999]
          Length = 667

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 19/221 (8%)

Query: 48  IFLFYIGLTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRI 106
           I +    L+P   ++ I  +++ L+  IS  ISL L  +      +L ++   +  LS  
Sbjct: 454 IGVLSFSLSP-NQVQQIPKQDIDLISSISDMISLSLANL------QLRVA---LHNLSMR 503

Query: 107 DCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N       +    ++ S       IV  D+D+FK INDN+GH  GD V+  +S
Sbjct: 504 DALTGLYNRRFIEECIQREIDRASRNSSSLIIVMADLDHFKHINDNYGHDAGDAVLKTIS 563

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
              V        V R GGEEF       S++ A      LR  IE+ ++         ++
Sbjct: 564 QLFVGFRNGYDIVSRYGGEEFLFLLTDISQENAFQRLEKLRLQIEDLKVETGGHVIDSLS 623

Query: 220 ISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           IS G A           +I RAD+A+Y+AK +GRN++  ++
Sbjct: 624 ISIGAATFPEMGTEKEILINRADEAMYLAKNNGRNQIAFYT 664


>gi|83746845|ref|ZP_00943892.1| Sensory box/GGDEF family protein [Ralstonia solanacearum UW551]
 gi|83726430|gb|EAP73561.1| Sensory box/GGDEF family protein [Ralstonia solanacearum UW551]
          Length = 991

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 10/179 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136
           Y     + E   S   +S+++  D L+GL N       L +  E+       + +++ D+
Sbjct: 811 YAFVQDVTEAKRSEMELSRMAHFDALTGLANRYELYERLRAALERRQRQPALMGVLYLDV 870

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAIL 195
           D+FK+IND +GH  GD V+  ++ +L         V RL G+EF        +  +A   
Sbjct: 871 DHFKRINDTYGHAAGDAVLVEVARRLQHTVRRTDTVARLAGDEFVILLDPIDTSDDALHT 930

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           A  +   I    I +    ++ +T S G+A           ++  AD+ALY AK  GR+
Sbjct: 931 AQKVVSAIR-PPIQLRGDIALKVTASIGVACPGLDAADADAVLREADRALYWAKSRGRD 988


>gi|285017582|ref|YP_003375293.1| two-component system sensor protein [Xanthomonas albilineans GPE
           PC73]
 gi|283472800|emb|CBA15305.1| hypothetical two-component system sensor protein [Xanthomonas
           albilineans]
          Length = 716

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 10/190 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDID 137
           +    + E   +   +  L+  D L+ L N +     L     +       ++++F D+D
Sbjct: 266 VVLEDITEQKRAEQELRYLANYDTLTSLPNRALLSERLARAIVRARRQAGAVAVLFLDLD 325

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILA 196
            FK IND+ GHPVGD+V+  ++++L    G    V RL G+EF        S+ EA  +A
Sbjct: 326 RFKDINDSQGHPVGDQVLRAVAERLQQAVGPQHTVARLAGDEFTVVVEDIVSQDEAESVA 385

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             +    E   + +     + ++ S GI+    H    S ++  AD A+Y AK +GR   
Sbjct: 386 ARVLAAFE-PPLRLDDRREVAVSTSIGISLFPQHALLPSELLKHADTAMYQAKAAGRRNA 444

Query: 256 VCFSDIENNT 265
             +S   +  
Sbjct: 445 QVYSASMDEA 454


>gi|258624694|ref|ZP_05719628.1| PAS domain S-box/GGDEF domain protein [Vibrio mimicus VM603]
 gi|258582981|gb|EEW07796.1| PAS domain S-box/GGDEF domain protein [Vibrio mimicus VM603]
          Length = 684

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+GL N   F   L    +    L +++ DID FK IND+ GH +GDKVI  ++ 
Sbjct: 256 AHIDSLTGLYNRHGFTKRLEQCIQNETPLVLLYLDIDNFKNINDSLGHHIGDKVIKEVAA 315

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHIT 219
           +L  +      +G LGG+EF            A +LA+ +  +I  +Q       S  + 
Sbjct: 316 RLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLI--NQPFDLHHFSKRLA 373

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +           ++  AD A+Y AK+ GRNR++ F+D  N   
Sbjct: 374 CSIGSVRYPGDGTDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEA 421


>gi|27375475|ref|NP_767004.1| hypothetical protein blr0364 [Bradyrhizobium japonicum USDA 110]
 gi|27348612|dbj|BAC45629.1| blr0364 [Bradyrhizobium japonicum USDA 110]
          Length = 887

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 81/181 (44%), Gaps = 10/181 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYF 139
           +   + E   +  RI+ ++  D L+ L N       L          +  +I++ D+D F
Sbjct: 445 THDDVTERIRADERIAHMAHYDALTDLPNRVLMRGHLERRVAELAEGKPFAILYIDVDEF 504

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K +ND+ GH VGD+++  ++++L         V RLGG+EFA    G+  + E   LA  
Sbjct: 505 KGVNDSLGHEVGDELLRQVANRLRACVSGNDLVARLGGDEFAIVKAGTRDQAELTALAET 564

Query: 199 LRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +         G  +    S GIA    H + +  ++ RAD A+Y AK  GR     
Sbjct: 565 ILNALRA--PVNCKGQEVPTDASIGIAIAPDHGDNLDDLLKRADLAMYAAKSEGRRTFRV 622

Query: 258 F 258
           F
Sbjct: 623 F 623


>gi|323495200|ref|ZP_08100284.1| putative GGDEF protein [Vibrio brasiliensis LMG 20546]
 gi|323310559|gb|EGA63739.1| putative GGDEF protein [Vibrio brasiliensis LMG 20546]
          Length = 321

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 66/202 (32%), Positives = 101/202 (50%), Gaps = 16/202 (7%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
           V ++SL+I  +T       I+ + +  L  S  ++S LS+ D L+ L N + +  +L   
Sbjct: 123 VSHVSLIINDVT------DIAKNKIH-LMDSNQKLSNLSQTDGLTKLYNRAHWEVNLQKE 175

Query: 126 NEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
            E         S+V FDID+FK++ND +GH VGD+VI   ++ L     +    GR GGE
Sbjct: 176 YEHCQVTGEVSSLVIFDIDHFKRVNDTYGHTVGDEVIRHAAEALKRASRSSDICGRYGGE 235

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TII 237
           EF     G+   +A      LRK IE+S +       +  TIS G+ E    +      +
Sbjct: 236 EFTVILPGTCANQALYFTERLRKRIESSVVKCEQ-HDVKYTISLGVCEISPLQSSHLAWL 294

Query: 238 YRADQALYVAKKSGRNRVVCFS 259
             AD++LY +K+SGRNR   F 
Sbjct: 295 EHADKSLYFSKESGRNRSTVFE 316


>gi|303246345|ref|ZP_07332625.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
 gi|302492408|gb|EFL52280.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
          Length = 296

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 8/168 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           EL +    + +LS  D L+GL N          +L   +  +S++  DID+FK+IND FG
Sbjct: 130 ELALKNRELMRLSTTDMLTGLANRQRLDALLGQALDDRSGPISLMMLDIDHFKRINDRFG 189

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           HP GD+ +A L++ L         +GR GGEEF      +   +A +LA  LR+ +   +
Sbjct: 190 HPAGDRTLAALAEALRQATPEGCTLGRWGGEEFLILCRETMLADAYLLAEALRERVLELE 249

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +         ++ S G+ E    E    ++ R DQALY AK+ GRNRV
Sbjct: 250 LPDVG----RLSCSFGVVEAAPSETAERLMSRVDQALYAAKELGRNRV 293


>gi|301167943|emb|CBW27529.1| putative two-component response regulator with GGDEF sensory box
           protein [Bacteriovorax marinus SJ]
          Length = 303

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 91/174 (52%), Gaps = 10/174 (5%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNF 146
            ++Y+++S  +  D  +G  N + F + +           + LS++ FD+D+FK +NDN+
Sbjct: 128 RLTYDKLSMEANTDGHTGCYNKTYFNNRIELEVKKSKVTGDPLSLILFDLDHFKSLNDNY 187

Query: 147 GHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           GH  GD V+  L+D +            R GGEEF      ++ +++  +A  LRK++++
Sbjct: 188 GHDAGDFVLKELADVIRGGGVRDNDVFARYGGEEFVILLPKTNLKQSFEIAERLRKLVQD 247

Query: 206 SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
              N   G  + +T S G+A+        + +  RAD+++Y +K+ GRN+V  +
Sbjct: 248 HDFNY-EGKILPVTASIGVADYRQGVTSGTELFKRADESVYKSKEGGRNQVNFY 300


>gi|255319974|ref|ZP_05361174.1| diguanylate cyclase [Acinetobacter radioresistens SK82]
 gi|255302994|gb|EET82211.1| diguanylate cyclase [Acinetobacter radioresistens SK82]
          Length = 522

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 52/161 (32%), Positives = 73/161 (45%), Gaps = 8/161 (4%)

Query: 99  RISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            +      D L+GLLN      F   +       S++  DID+FK+IND +GH  GD+V+
Sbjct: 363 EMDHRINTDPLTGLLNRRGMQFFTKGMIDSKVPFSVLLIDIDHFKRINDTYGHDEGDEVL 422

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L+  ++  F       R GGEEF       ++QE    A   R  +E   IN      
Sbjct: 423 KTLAKIMLENFRKNDLCCRHGGEEFIVIIPNVNKQEVYESAERFRHAVETYIINNVG--- 479

Query: 216 IHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             IT+S GIA         + ++  AD  LY AK  GRN+V
Sbjct: 480 -RITVSIGIASWPESSNSFTEVLKIADNNLYHAKNHGRNQV 519


>gi|254293944|ref|YP_003059967.1| diguanylate cyclase [Hirschia baltica ATCC 49814]
 gi|254042475|gb|ACT59270.1| diguanylate cyclase [Hirschia baltica ATCC 49814]
          Length = 347

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 65/201 (32%), Positives = 96/201 (47%), Gaps = 19/201 (9%)

Query: 79  SLLLGYISGSILKELFISYNRISQL----------SRIDCLSGLLNHSAFISSLGSY--- 125
           +L +  I+ ++ ++L  S   I  L          +  D L+G+ N   F   L      
Sbjct: 143 TLEMSDINHNLNRQLLRSTREIEMLRTSLQAARAEALTDGLTGVANRKQFDEVLQRRINE 202

Query: 126 ----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                  L ++  DID+FK  ND +GH  GD+VI F+++ L         V R GGEEFA
Sbjct: 203 SLESGSDLCLIICDIDFFKNFNDTWGHQTGDQVIRFVANSLAQKAVNESLVARYGGEEFA 262

Query: 182 AAALGSSEQEAAILANDLRKIIENSQ-INISSGPSIH-ITISAGIAERCHKEPISTIIYR 239
                +    A   A  +RK IE+ + I  S+G  +  +T+S GIA     E  S +I R
Sbjct: 263 IIMPRTILDTAFEFAESVRKTIESKKLIRRSTGEPLGQVTVSFGIANYRSGEGASNLIER 322

Query: 240 ADQALYVAKKSGRNRVVCFSD 260
           AD  LY +K++GRNR+   SD
Sbjct: 323 ADHCLYHSKQTGRNRITLESD 343


>gi|28868515|ref|NP_791134.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28851753|gb|AAO54829.1| GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 502

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 94/208 (45%), Gaps = 15/208 (7%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           ++   +++    SL+ + I   + L ++    L+    + + ++ L+  D L+GL N   
Sbjct: 293 WHRNAWLIGTATSLLCLGI---VWLTWLLCGELRRRHRAEDELASLAATDGLTGLDNRRQ 349

Query: 118 FIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTP 169
                           + LS++  D+D+FK  N+  GH  GD+ +  ++  +   +    
Sbjct: 350 LDEAMETEWARAQRSGKWLSLLMIDVDHFKAFNERHGHQGGDEALRRIAQAVAGSIRRPG 409

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC- 228
             + R GGEEF A    +    A ++A  +R  +E+            IT+S G+A +  
Sbjct: 410 DQLARYGGEEFVAVLPETDMNGALVIAEKIRAAVESLPRYADDEQ--PITVSIGVASQIV 467

Query: 229 -HKEPISTIIYRADQALYVAKKSGRNRV 255
              + ++     AD+ALY AK +GRNRV
Sbjct: 468 EQGDKLAAFFGIADKALYQAKHNGRNRV 495


>gi|331015195|gb|EGH95251.1| GGDEF domain protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 483

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 94/208 (45%), Gaps = 15/208 (7%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           ++   +++    SL+ + I   + L ++    L+    + + ++ L+  D L+GL N   
Sbjct: 274 WHRNAWLIGTATSLLCLGI---VWLTWLLCGELRRRHRAEDELASLAATDGLTGLDNRRQ 330

Query: 118 FIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTP 169
                           + LS++  D+D+FK  N+  GH  GD+ +  ++  +   +    
Sbjct: 331 LDEAMETEWARAQRSGKWLSLLMIDVDHFKAFNERHGHQGGDEALRRIAQAVAGSIRRPG 390

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC- 228
             + R GGEEF A    +    A ++A  +R  +E+            IT+S G+A +  
Sbjct: 391 DQLARYGGEEFVAVLPETDMNGALVIAEKIRAAVESLPRYADDEQ--PITVSIGVASQIV 448

Query: 229 -HKEPISTIIYRADQALYVAKKSGRNRV 255
              + ++     AD+ALY AK +GRNRV
Sbjct: 449 EQGDKLAAFFGIADKALYQAKHNGRNRV 476


>gi|229072881|ref|ZP_04206079.1| GGDEF domain protein [Bacillus cereus F65185]
 gi|229082626|ref|ZP_04215089.1| GGDEF domain protein [Bacillus cereus Rock4-2]
 gi|228701058|gb|EEL53581.1| GGDEF domain protein [Bacillus cereus Rock4-2]
 gi|228710224|gb|EEL62200.1| GGDEF domain protein [Bacillus cereus F65185]
          Length = 352

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 16/226 (7%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96
           +++ T I    I   YI L          +  + L +IS  I+  + +IS + + +    
Sbjct: 132 VWLHTYILSILIPALYIWLIK-------EIHIVGLYLISSIITGYITFISANYVLQSNEL 184

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
           + ++ Q + ID L+GL N   F   +  +       N+   ++  DID+FK +ND +GHP
Sbjct: 185 FQKMKQYATIDALTGLGNVRQFDLEMNRHISNKNMKNDSFCLLLIDIDHFKYVNDTYGHP 244

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+  +   L      P    R GGEEFA            +    +R  +E+    
Sbjct: 245 AGDEVLKQVGCILRETSQFPDLAFRKGGEEFALLIPNKGLAYGILTGEQIRTAVESHSFQ 304

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +     I IT+S G++E   +      I  AD ALY +K++GRN+V
Sbjct: 305 LLDETKIKITVSVGVSEY--EGSPEQFIQAADDALYYSKRNGRNKV 348


>gi|74317945|ref|YP_315685.1| diguanylate cyclase [Thiobacillus denitrificans ATCC 25259]
 gi|74057440|gb|AAZ97880.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 253

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 84/183 (45%), Gaps = 11/183 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDN 145
           L    + + +LS  D L+GL N   F ++L    E ++       ++  DID+FKQIND 
Sbjct: 43  LQRVIDELCELSLKDPLTGLGNRRQFRAALERAIEIVARSGDSVLLLLLDIDHFKQINDA 102

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD+V+  ++  L         V R GGEEFA             +A  +R  IE 
Sbjct: 103 HGHLVGDQVLQAVARALAESIRPMDTVARYGGEEFAMILPNCLPACGHAVAERIRHRIEA 162

Query: 206 SQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             + ++   ++ +T S G A      +  +   + RADQ LY AK  GRN  + F D   
Sbjct: 163 LSVQVAPHTALRVTASIGGAYAPQWVRSTVDLWVERADQQLYRAKADGRN--LVFLDQPQ 220

Query: 264 NTC 266
            + 
Sbjct: 221 ESA 223


>gi|78484367|ref|YP_390292.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78362653|gb|ABB40618.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
          Length = 423

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 11/177 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQIN 143
           ++L      + QLS  D L+ L N       L   ++K        S++  DID FK++N
Sbjct: 247 EDLLHKNKILEQLSTTDPLTQLCNRLKIERVLEDLHQKYEDEQQIYSLLLIDIDCFKKVN 306

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGD+V+  LS++L   F     +GR GGEEF       + ++A + A   R+  
Sbjct: 307 DTYGHTVGDEVLKELSERLKQSFTQHGHIGRWGGEEFIVILENETLEQAVVAAETFRQKT 366

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           EN+   I  G   ++T+S G+A     + IS +I+ AD  LY +K +GRNRV  +S+
Sbjct: 367 ENTSF-IEVG---NLTVSIGVATVTSAQTISELIHSADLGLYESKHAGRNRVTVYSN 419


>gi|325292368|ref|YP_004278232.1| sensory box/GGDEF family protein [Agrobacterium sp. H13-3]
 gi|325060221|gb|ADY63912.1| putative sensory box/GGDEF family protein [Agrobacterium sp. H13-3]
          Length = 325

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 66/217 (30%), Positives = 100/217 (46%), Gaps = 13/217 (5%)

Query: 54  GLTPFYGLEYILVENLSLVIISITI--SLLLGYIS-----GSILKELFISYNRISQLSRI 106
           G  P+  +E  L +   ++    T+    +L  ++     G  L++L    +R  + +  
Sbjct: 106 GKLPYRTIETSLNDGRWMLTTETTLPGGWMLCVVTDVSELGIQLRDLRQERDRALKSALS 165

Query: 107 DCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           D L+GL N    +  L         + L+++  DID+FK +ND FGH  GD V+   + +
Sbjct: 166 DELTGLGNRRYAMDILNQMLGPNKAQALAVIIMDIDHFKAVNDRFGHACGDLVLKDFATR 225

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L    G    VGR+GGEEF     GS    A      L   +  +   +S  P    + S
Sbjct: 226 LSAAIGRDDLVGRIGGEEFLLVLSGSRMLSAESTMQKLLATLTEAS-PLSDVPDFRYSCS 284

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           AGIA     E  S ++ RAD ALY AK +GRNR V +
Sbjct: 285 AGIAFADPGESASDVLRRADTALYEAKNTGRNRFVVY 321


>gi|323487913|ref|ZP_08093171.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis
           MPA1U2]
 gi|323398647|gb|EGA91435.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis
           MPA1U2]
          Length = 760

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 89/181 (49%), Gaps = 11/181 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           ++L    +++  ++  D L+GL N   F+ +L S         +KL++VF D+D FK IN
Sbjct: 315 QQLEEVIHQVEHIAYHDELTGLPNRRLFLKNLESSIATADESGKKLAVVFIDLDRFKNIN 374

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKI 202
           D FGH  GD ++   S ++     +   + R GG+EF         E +     + ++  
Sbjct: 375 DTFGHEFGDLLLQDFSRKISENLRSVDTISRQGGDEFTLILNNIQDEADITPTIHRIQAA 434

Query: 203 IENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            +++ ++I     +H+++S GIA      +  S ++  AD A+Y AK  G+N    FSD 
Sbjct: 435 FQHA-LSIKD-QELHVSMSIGIAIYPDNGKSTSELLKHADSAMYSAKAKGKNNYQFFSDD 492

Query: 262 E 262
            
Sbjct: 493 M 493


>gi|317048679|ref|YP_004116327.1| diguanylate cyclase/phosphodiesterase [Pantoea sp. At-9b]
 gi|316950296|gb|ADU69771.1| diguanylate cyclase/phosphodiesterase [Pantoea sp. At-9b]
          Length = 732

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 92/212 (43%), Gaps = 17/212 (8%)

Query: 69  LSLVIISITISLLLGYISGSILKELF------ISYNRISQLSRIDCLSGLLNHSAFISSL 122
           LS+V+I++    ++  I  S L           S  +   L+  D L+GL N S     L
Sbjct: 273 LSVVMITLVCLFMVRRIWTSSLSLSQSLLRLGASEAQAQHLAFHDVLTGLPNRSMVEDRL 332

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                    Y+ +++++  D+D FK IND +GH  GD++I  +  +L  +      VGR+
Sbjct: 333 SQALAMAARYDHRVALLLIDLDRFKTINDTYGHHAGDELIIQVGHRLTSIVRASDTVGRI 392

Query: 176 GGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF           +   LA  +   +  S+     G    I  S G+A         
Sbjct: 393 GGDEFIIVMPDVDNIGQVQSLAKRIISAL--SEPYQLFGSEAWIGASIGLALAPKDGLDR 450

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             ++ +AD ALY AK SGR +   F  + + +
Sbjct: 451 QELMRKADIALYEAKNSGRGQFRQFERVMDES 482


>gi|255318315|ref|ZP_05359550.1| diguanylate cyclase [Acinetobacter radioresistens SK82]
 gi|262379059|ref|ZP_06072215.1| response regulator [Acinetobacter radioresistens SH164]
 gi|255304627|gb|EET83809.1| diguanylate cyclase [Acinetobacter radioresistens SK82]
 gi|262298516|gb|EEY86429.1| response regulator [Acinetobacter radioresistens SH164]
          Length = 445

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 71/252 (28%), Positives = 113/252 (44%), Gaps = 21/252 (8%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIG-------LTPFYGLEYILVENLSLVII 74
             P   +I+ ++ +  F  TV  I +I  FYI        LT +    Y+ + +L   II
Sbjct: 197 LYPIAALIWCALNYRHF--TVALITSISCFYIAFFMSDKYLTLYPEQYYLEMISLRFGII 254

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNE 127
           ++ I+ L       I  +L      +      D L+  L    F+ S           ++
Sbjct: 255 TMAIAPLTVSSINRIRSQLI---RELQHHVAHDELTASLTRRQFMRSAHLLLRQRTQESQ 311

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            L+++  DID+FK IND +GH  GD+ +   +  +          GRLGGEEFA   L  
Sbjct: 312 SLAVLMLDIDHFKLINDKYGHQAGDEALRACAAVIRRSLRGYDLFGRLGGEEFAIVLLDV 371

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALY 245
              EA  +A  +R+ ++   I + +     I IS G+          I  ++++AD ALY
Sbjct: 372 GPAEAFEIAERIRETLKTHIIQLDAETQFSIRISIGLTLFNPAVPHNIEALLHKADLALY 431

Query: 246 VAKKSGRNRVVC 257
            AK+SGR+RVV 
Sbjct: 432 EAKRSGRDRVVI 443


>gi|22298753|ref|NP_682000.1| GGDEF family protein [Thermosynechococcus elongatus BP-1]
 gi|22294934|dbj|BAC08762.1| GGDEF family protein [Thermosynechococcus elongatus BP-1]
          Length = 355

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L    + + Q+S+ D L+ L N   F S L        + +  L+IV  DID+FK  ND 
Sbjct: 157 LEAENHYLQQISQQDSLTKLANRRTFESRLRLVWQEAAATHTPLAIVLLDIDHFKDYNDT 216

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD+ +  ++  +         V R GGEEF      +    A  +   +   I +
Sbjct: 217 YGHLAGDRALQRVAYAIKSQVRATDLVARYGGEEFVLLLSQAHHDAAICILERIFNHIRS 276

Query: 206 SQINISSGP-SIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +I  +S P   ++T+SAGI          PIS +I  AD ALY AK+SGR+R V 
Sbjct: 277 LEIPHASSPVKPYLTLSAGICIATATPRDCPISELIATADAALYEAKRSGRDRYVL 332


>gi|296156558|ref|ZP_06839396.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. Ch1-1]
 gi|295893157|gb|EFG72937.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. Ch1-1]
          Length = 1059

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 13/188 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + +   S  RI  L+  D L+ L N   F+  LG          ++++++F D+D FK 
Sbjct: 615 DITDRKKSEARIQFLAEHDVLTELPNRELFVKRLGVVLGNARRTGQRVAVLFIDLDRFKN 674

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILANDL 199
           IND+ GH +GD ++  +S +L+    T   V RLGG+EF      + ++      +   L
Sbjct: 675 INDSLGHHIGDSLLRSVSRRLLQAVRTNDTVSRLGGDEFTVILNSVSNAADVTRTIEERL 734

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             ++   Q +   G ++ ++ S G+A      E I T++  AD A+Y AK +GRN V  F
Sbjct: 735 LPLVR--QPHEVGGVTLQVSCSVGVALFPDDGEDIETLMQNADAAMYQAKGAGRNLVKFF 792

Query: 259 S-DIENNT 265
           + DI   T
Sbjct: 793 APDIAERT 800


>gi|206890901|ref|YP_002248537.1| diguanylate cyclase [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742839|gb|ACI21896.1| diguanylate cyclase [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 252

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 12/231 (5%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL- 93
           F  F   V+ +   F+F IG   +   E+IL  +L+  I S+T++LL   I    ++++ 
Sbjct: 17  FLAFNIGVLMLILSFIFIIG--GYEKKEFILAISLA-GISSLTVNLLSAKIMKRKMEKII 73

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNF 146
             S+ ++      D L+ + N +  I+ L         + + LS+   DID FK INDN+
Sbjct: 74  HYSFEKVETQLYFDELTSVYNRTTGINRLMEEMARSKRHKQHLSVAMLDIDNFKSINDNY 133

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+V+  ++ Q+  +      V R GGEEF      + E +A +    +R+ I   
Sbjct: 134 GHLAGDRVLNHIALQIKNLLRASDVVSRYGGEEFLIILPETDEIKAFMALERVRENIARR 193

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + I +G  ++IT+S GI E    +  +  I RAD AL  AK+ G+NR+  
Sbjct: 194 PVKIGNGK-LNITVSIGITEVDINDSSTDAIQRADLALLKAKRDGKNRIEI 243


>gi|167625641|ref|YP_001675935.1| diguanylate cyclase/phosphodiesterase [Shewanella halifaxensis
           HAW-EB4]
 gi|167355663|gb|ABZ78276.1| diguanylate cyclase/phosphodiesterase [Shewanella halifaxensis
           HAW-EB4]
          Length = 784

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 108/241 (44%), Gaps = 22/241 (9%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL------LLGYISGSILKE-- 92
           +  FIA I L  + L  F GL Y++  N + +++   + L       L   +  + +E  
Sbjct: 276 SAWFIAAISL--LALPVFMGLIYLMRVNNANLVLQTQVELSSEQQQELATQNALLHEEIC 333

Query: 93  -LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
               S ++++  +  D L+ L N +  ++ L            ++ ++F D+D FKQ+ND
Sbjct: 334 KRKASESKLAYQATHDELTNLANRTHGMARLQEAIRAAHEKQTQILLLFIDLDNFKQVND 393

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKII 203
             GH  GD ++   S++L+        V RLGG+EF         Q+ A ++A+ +  + 
Sbjct: 394 TVGHHAGDLLLKQTSERLLTSVRRSDIVARLGGDEFLVIVPDIQHQDSAKLVASSILSVF 453

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           E  +          ++ S G++         +T++ RAD ALY  K  GRN    + +  
Sbjct: 454 E--KPFHIEQQEFFVSTSIGMSIYPKDGRNAATLLKRADTALYKVKDLGRNGFSFYDESM 511

Query: 263 N 263
           N
Sbjct: 512 N 512


>gi|66044557|ref|YP_234398.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63255264|gb|AAY36360.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|330968993|gb|EGH69059.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 334

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 84/178 (47%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+GL N   F   L            +LS++  D+DYFK  N
Sbjct: 156 QQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRAIREQSQLSLLMIDVDYFKPYN 215

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DNFGH  GD+ +  ++  +            R GGEEFA     +S   A +LA  LR+ 
Sbjct: 216 DNFGHLEGDEALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQS 275

Query: 203 IENSQI-NISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
           +    I +I+  P   +T+S G+A        P   +I  AD+ LY AK +GRN+V  
Sbjct: 276 VSGMNIPHIAPAPGSSLTVSIGVATMTPQLGMPSRQLILDADKGLYQAKNNGRNQVAA 333


>gi|91977452|ref|YP_570111.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91683908|gb|ABE40210.1| diguanylate cyclase [Rhodopseudomonas palustris BisB5]
          Length = 483

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 56/236 (23%), Positives = 103/236 (43%), Gaps = 14/236 (5%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101
           +  I  + L Y        + ++ V  L + +  + ++L+L   +  IL  LF+      
Sbjct: 228 IALIYILGLPYTCAMMVSPIPHMYVVGLLVPVWGLGMALILME-NYEILLNLFLKERENQ 286

Query: 102 QLSRIDCLSGLLNHSA----FISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            L+  D L+GL N +     F   L       G   + L++   D+D FK  ND +GH +
Sbjct: 287 WLANYDSLTGLPNRTMQRQRFEQLLRGATGTTGRGYQPLTVFCLDLDGFKAANDRYGHAL 346

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  ++++L         + R+GG+EF      +   E+A +A  +   I     ++
Sbjct: 347 GDAVLVTVAERLRSCVREHDLIFRVGGDEFVILLPATGATESAAIAERVIARIAE-PFDL 405

Query: 211 SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
               ++ I +S G A           ++  AD A+Y AK+ G+  +V    I++ T
Sbjct: 406 GRTIALTIGVSIGSATFPRDGLTADALLRSADHAMYEAKRRGKGTLVHCDTIDDPT 461


>gi|283851585|ref|ZP_06368865.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
 gi|283573119|gb|EFC21099.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
          Length = 299

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 62/171 (36%), Positives = 86/171 (50%), Gaps = 11/171 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           EL ++   + +LS  D L+GL N     + LG            LS+V  DID+FK +ND
Sbjct: 130 ELALTNRELVRLSTTDMLTGLANRQRVDALLGQGLCAMAEAGTPLSLVMLDIDHFKLVND 189

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+V+  ++ +L         VGR GGEEF     G    +A +LA  LR+ + 
Sbjct: 190 RHGHQRGDEVLRAVAGRLRGAVPPEFAVGRWGGEEFLVLCPGMRLADAYLLAETLRQAVS 249

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                 +SGP   +T S G+ E    E    ++ RADQALY AK  GR+RV
Sbjct: 250 APD---TSGPG-RLTCSFGVVEARSGEDGVGLLARADQALYAAKGLGRDRV 296


>gi|239928760|ref|ZP_04685713.1| membrane associated phophodiesterase [Streptomyces ghanaensis ATCC
           14672]
 gi|291437082|ref|ZP_06576472.1| integral membrane phosphodiesterase [Streptomyces ghanaensis ATCC
           14672]
 gi|291339977|gb|EFE66933.1| integral membrane phosphodiesterase [Streptomyces ghanaensis ATCC
           14672]
          Length = 997

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 81/199 (40%), Gaps = 21/199 (10%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKL----------SIV 132
            +   + E      ++   +  D L+ L N + F   +       +           +++
Sbjct: 497 FNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTRRVQQALSGRRASDRGAALKGTAVL 556

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS---- 188
           F D+D FK +ND  GH  GD+++   + +L           RLGG+EFAA  +G      
Sbjct: 557 FIDLDGFKGVNDTIGHQAGDELLVQAARRLQEAVRKGDTASRLGGDEFAALIVGDGVRDR 616

Query: 189 ---EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
              E+    LA+ LR  +  SQ  +  G  + +  S G+A          ++  AD A+Y
Sbjct: 617 DARERHILELADRLRATL--SQPYLIDGNDVRVNASIGVAFAEPGLGAGELLRNADLAMY 674

Query: 246 VAKKSGRNRVVCFSDIENN 264
            AK +G+ RV  +      
Sbjct: 675 RAKAAGKGRVELYRPQMQQ 693


>gi|254489955|ref|ZP_05103150.1| hypothetical protein MDMS009_286 [Methylophaga thiooxidans DMS010]
 gi|224465040|gb|EEF81294.1| hypothetical protein MDMS009_286 [Methylophaga thiooxydans DMS010]
          Length = 1147

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 85/181 (46%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           + + ++  +  ++  L+  D L+ L N +     LG            L++ F D+D FK
Sbjct: 792 ADITDIKNTERQLEDLAHYDALTQLANRTLLSDRLGQSLVHTRGNQTMLAVCFLDLDGFK 851

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            +ND +GH +GD+++  ++ +L     +   V R+GG+EF        E  E   + + +
Sbjct: 852 PVNDMYGHEIGDQLLIEVARRLEHTVRSGDTVARMGGDEFVLLIANIREVDELDPILSRM 911

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
            + I   +I++     I +T S G+A          T++  AD ++Y AK++GRN    F
Sbjct: 912 NQKIAE-KIHLGE-RVISVTASIGVALYPSDNVDADTLLRHADLSMYEAKQAGRNGYHIF 969

Query: 259 S 259
            
Sbjct: 970 D 970


>gi|158336184|ref|YP_001517358.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158306425|gb|ABW28042.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
          Length = 196

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 57/194 (29%), Positives = 92/194 (47%), Gaps = 10/194 (5%)

Query: 69  LSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
           ++L  I+  +S L+ +  +    L  L      +  LS  D L+ L N       L    
Sbjct: 1   MTLGPITGVVSTLVPFHRVLQQRLTSLQDERALMQILSERDSLTQLYNRRVAEEFLSTCV 60

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                K  ++ FDID+FK+IND +GH  GD V+  ++ +   V      + R GGEEF  
Sbjct: 61  ADAASKSGVILFDIDHFKRINDTYGHQAGDIVLVAVAMRCSQVLRKTDCLARWGGEEFFV 120

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
                  +    +A +LR  I + +I     P+  +T S G++     + I +++ R D+
Sbjct: 121 VLQHVGAEAIERIAEELRLAIASEEIE----PAGSVTASFGVSLIKSNDTIGSLLQRVDK 176

Query: 243 ALYVAKKSGRNRVV 256
           A+Y AK SGRNRV+
Sbjct: 177 AMYAAKTSGRNRVM 190


>gi|157963802|ref|YP_001503836.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157848802|gb|ABV89301.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
          Length = 396

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 74/258 (28%), Positives = 122/258 (47%), Gaps = 35/258 (13%)

Query: 22  FSPHTFMIYFSIFFSIFIATV------IFIANIFLFYIGLTPFYGL-EYILVENLSLVII 74
             P+T  +  S++  I I+ +      I+ A      I +T F  L  + L + L L I+
Sbjct: 148 LLPNTLKLLTSLYAPIGISCIVLCIFTIWRATGVDSAIMVTLFIWLFHFYLPDELPLSIL 207

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF 134
            +TI L L Y++  +++           L+  D L+GL +  +  +   S N+   +   
Sbjct: 208 -LTI-LALAYLTSILVRS--------HNLAYRDELTGLASRRSLNTLAHSLNKHYCLAMV 257

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+ ND +GH VGD+V+  ++ +L  V G    V R GGEEF       + +    
Sbjct: 258 DIDHFKKFNDTYGHDVGDQVLQLVAKKLSKVEGGG-KVFRYGGEEFTIVFTNKNIEAVLP 316

Query: 195 LANDLRKIIENSQINISS-----------------GPSIHITISAGIAERCHKEPISTII 237
           L  ++R+ I    I + +                  P ++ITIS G+AE+  +      +
Sbjct: 317 LLEEIRRKISQYNIVLRNQRRKNQSKLNRDEGHKTNPVVNITISIGVAEQHGETSFENTL 376

Query: 238 YRADQALYVAKKSGRNRV 255
            RAD+ALY AK +GRN+V
Sbjct: 377 KRADKALYKAKNNGRNQV 394


>gi|89896561|ref|YP_520048.1| hypothetical protein DSY3815 [Desulfitobacterium hafniense Y51]
 gi|89336009|dbj|BAE85604.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 450

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 78/176 (44%), Gaps = 11/176 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           E     +R  + S ID L+ + N   F                 LS++  D+D FK+ ND
Sbjct: 273 EQKKYRDRQKENSYIDELTQIANRRKFNETVTIEWNRARRNGNSLSVLMIDVDCFKKYND 332

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GDK +  ++  L   V  +   V R GGEEFA     +    A ++   LR+ +
Sbjct: 333 FYGHLEGDKCLYKIAQTLKSNVKRSSDLVARWGGEEFACVLTDTDRIGAMLVGERLRRAV 392

Query: 204 ENSQINIS-SGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVV 256
               I    S     +T S G+A         +  ++++AD ALY AKK+GRN V 
Sbjct: 393 VKLNIPSEISDVDRVVTASIGVATALPAVDNSLEELLHKADMALYKAKKTGRNCVC 448


>gi|332672139|ref|YP_004455147.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Cellulomonas fimi ATCC 484]
 gi|332341177|gb|AEE47760.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cellulomonas fimi ATCC 484]
          Length = 1095

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 81/181 (44%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           + + E   +   ++  +  D L+ L N +     L             +++++ D+D FK
Sbjct: 628 ADITERRRAEAELTHNALHDSLTSLPNRALLTERLDRALARAGRDGTTVAVLYLDLDNFK 687

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            +ND+ GH  GD+++  +  +L  V        RLGG+EF       +S ++   + + +
Sbjct: 688 DVNDSLGHAAGDELLVHIGRRLTTVMRETDTAARLGGDEFVVICEDLTSLEDVGAVTHRI 747

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
            + +   Q+ I +G  + ++ S GIA           ++  AD A+Y AK +GR+R    
Sbjct: 748 TQALA-VQVPI-AGRMVTVSASIGIAHSTSGHDRSEDLLRAADIAMYRAKANGRSRYEFA 805

Query: 259 S 259
            
Sbjct: 806 D 806


>gi|310659718|ref|YP_003937439.1| hypothetical protein CLOST_2418 [Clostridium sticklandii DSM 519]
 gi|308826496|emb|CBH22534.1| protein of unknown function [Clostridium sticklandii]
          Length = 250

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 57/182 (31%), Positives = 82/182 (45%), Gaps = 11/182 (6%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVF 133
           LL  +     KEL     +   L+  D L+GL N       L         Y    S++ 
Sbjct: 67  LLEIMVNEKTKELEKLLQQTMVLAITDKLTGLYNRLEIDKRLDEAIAGFKRYAAAFSVLI 126

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK++ND +GH  GD  +   ++ L         +GR GGEEF      +   E+ 
Sbjct: 127 VDVDNFKRVNDVYGHQKGDWCLQKTAEILKERMRKTDVLGRWGGEEFIVICPSTHLAESV 186

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +L   +RK IE    +I        T+S GI+     +  + II RAD+ LY+AK  GRN
Sbjct: 187 LLGESIRKAIEEESFDIEGNY----TVSIGISSVQKDDEANCIIKRADENLYLAKSKGRN 242

Query: 254 RV 255
           RV
Sbjct: 243 RV 244


>gi|319778115|ref|YP_004134545.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171834|gb|ADV15371.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 878

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 8/180 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQ 141
           +S S   EL ++   +  ++  D L+GL N       L        + +++  D+D FKQ
Sbjct: 440 LSESKNAELKVAKAHVEHVALHDPLTGLPNRRYLDELLAEKSVTGTRTALLHLDLDRFKQ 499

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH  GD ++   S  + V  G   FV R+GG+EF   + G  +++ + L + +  
Sbjct: 500 INDTLGHAAGDAMLVHASKVIKVNTGPGDFVARIGGDEFVVVSHGRDDKQLSALGDRI-- 557

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           I +  +     G      +S GIA          ++  AD ALY AK SGRNR   F + 
Sbjct: 558 ITQMRRPVDFQGNPCRFGVSIGIA---AGTDAKQLLVNADLALYRAKGSGRNRHEFFDEE 614


>gi|89092562|ref|ZP_01165515.1| Signal transduction histidine kinase [Oceanospirillum sp. MED92]
 gi|89083074|gb|EAR62293.1| Signal transduction histidine kinase [Oceanospirillum sp. MED92]
          Length = 427

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 12/180 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            + E      +I +L+  D L+GL N   F       I      N    ++  DID+FKQ
Sbjct: 246 DISEARALEEKIEKLAVTDSLTGLFNRRNFEYLSDSLIERAKRENSFFCLIILDIDHFKQ 305

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND +GH  GD+V+  +S  L         +  R+GGEEFA      ++  A  LA  ++
Sbjct: 306 YNDTYGHLEGDEVLKKISQTLRKNVRRGNDYCFRVGGEEFAVIFTERTKGAATALAERIK 365

Query: 201 KIIENSQINI-SSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +E+  I    +G S ++TIS G+    +   ++PIS I    D+ LY AK+SGRN+++
Sbjct: 366 NEVESLAIPHKHNGASQYVTISLGLMMTKDFTDEDPISAIYQHTDELLYKAKESGRNKLI 425


>gi|310659583|ref|YP_003937304.1| hypothetical protein CLOST_2282 [Clostridium sticklandii DSM 519]
 gi|308826361|emb|CBH22399.1| protein of unknown function [Clostridium sticklandii]
          Length = 346

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 58/180 (32%), Positives = 94/180 (52%), Gaps = 11/180 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQ 141
           + ++L +      + S  D L+GL N              +     +LSI+  D+DYFK 
Sbjct: 164 LAEQLKLEKEIAEKNSLTDGLTGLANRRYLEDRIFYEFARMKRTWMELSIIMIDVDYFKL 223

Query: 142 INDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND +GH  GD+ +  ++++L   V      V R GGEEF      + ++EA ++A  ++
Sbjct: 224 YNDTYGHMQGDECLKIVANELNNSVKRATDLVARYGGEEFVVLLPNTGKEEAHMMATSMK 283

Query: 201 KIIENSQ-INISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
           K IEN + I+  S  S ++T+S G+A        P + +I +AD+ALY+AK  GRN+VV 
Sbjct: 284 KNIENLKIIHELSDVSSYVTVSVGVATFNRDTKLPCNMLIQQADEALYLAKDYGRNQVVA 343


>gi|309791726|ref|ZP_07686216.1| serine/threonine protein kinase [Oscillochloris trichoides DG6]
 gi|308226219|gb|EFO79957.1| serine/threonine protein kinase [Oscillochloris trichoides DG6]
          Length = 625

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 11/193 (5%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEK 128
           + I+ +L +     L+ + + +  +  L+  D L+ L N                  N  
Sbjct: 434 VMIAQVLAHEVVIALQNVRM-FQEMHTLAGTDPLTRLYNRRRLTELAEAAFRHAQKTNGN 492

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           ++ +F DID+FK +ND FGH VGDKV+ +L+  L  V  +   V R GGEEF   ++G +
Sbjct: 493 IAAIFIDIDHFKDVNDTFGHGVGDKVLEYLASLLRQV-RSSDIVARYGGEEFVIISIGHT 551

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247
            Q   + A  LR+ +    +N+  G  I ITIS G+A    + E ++ ++  ADQALY A
Sbjct: 552 TQHVRLFAERLRQEVAQQPVNLPEGQ-IAITISLGVASLTPQIESLAALLRFADQALYQA 610

Query: 248 KKSGRNRVVCFSD 260
           K SGRNRV  + +
Sbjct: 611 KTSGRNRVCVWGE 623


>gi|300866823|ref|ZP_07111501.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
 gi|300335173|emb|CBN56661.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
          Length = 1117

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 9/184 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFD 135
             +    + ++     ++S  +  D L+GL+N   F   L           E+  +++ D
Sbjct: 627 AVVVFRDVTQVRTQARQLSWQATHDALTGLVNRREFEYQLEQAILGAQNLKEEHILLYLD 686

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D FK +ND  GH  GD+++  +SD           + RLGG+EFA        ++    
Sbjct: 687 LDRFKIVNDTCGHIAGDELLRQVSDLFKSKIRKTDILARLGGDEFAVLLYHCPPEKGLDA 746

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNR 254
           A  L + I++ +     G +  I +S GIA        S+ I+  AD A Y AK  GRNR
Sbjct: 747 AESLLRSIQSFRFTW-QGKTFSIGVSIGIAAINVDATSSSCILSAADVACYAAKDKGRNR 805

Query: 255 VVCF 258
           V  +
Sbjct: 806 VQVY 809


>gi|153837525|ref|ZP_01990192.1| ggdef family protein [Vibrio parahaemolyticus AQ3810]
 gi|149749121|gb|EDM59926.1| ggdef family protein [Vibrio parahaemolyticus AQ3810]
          Length = 337

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 63/208 (30%), Positives = 106/208 (50%), Gaps = 11/208 (5%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSI------LKELFISYNRISQLSRIDCLSGLL 113
            +E ++V    LV  S  I     +++  +      +  L      + + +  D LS L 
Sbjct: 128 SIEEVMVVIRQLVAESHEIRHSTKFLNRQLTNASEEISRLKNQLAEVQKDALFDGLSNLY 187

Query: 114 NHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           N  AF + L    + N+ ++++  DID+FK  NDN+GH  GD V+  ++ +L       +
Sbjct: 188 NRRAFDTDLSMLINTNQAMTLILLDIDHFKAFNDNYGHLFGDTVLKAIARRLQQSCRDGV 247

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH-ITISAGIAERC 228
              R GGEEFA      S +     A+ LR++IE  ++ +  SG  +H IT S G+AE  
Sbjct: 248 SAYRFGGEEFALIVPNKSLRITRQYADTLRRMIEKLRVRDKRSGTQVHSITASFGVAEFE 307

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256
             + + +++ +AD+ LY AK+ GRNRV+
Sbjct: 308 VGDTVDSLVNKADKQLYEAKQLGRNRVM 335


>gi|330957167|gb|EGH57427.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 690

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 56/184 (30%), Positives = 86/184 (46%), Gaps = 11/184 (5%)

Query: 82  LGYISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           L     S+ +E     + + +    + +D L+ L N +A+   L             L +
Sbjct: 505 LSARVASMEQEALGFRSHLEEQRQKALVDTLTELPNRAAWGERLEHEMAQWQREKNSLLV 564

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FK+IND +GH  GDKV+  +++          F+ R GGEEF      +    
Sbjct: 565 CILDLDHFKRINDGYGHLAGDKVLKIVANVFKKRLRPGDFLARFGGEEFVMLLPATVPDV 624

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              L ++LR  +E    +   G  + IT+S G+      E   T I RADQALY AK++G
Sbjct: 625 GLKLLDELRAAVELCPFHFK-GERVTITVSMGMTAFRLGERSDTAIKRADQALYKAKENG 683

Query: 252 RNRV 255
           RNRV
Sbjct: 684 RNRV 687


>gi|311278699|ref|YP_003940930.1| diguanylate cyclase [Enterobacter cloacae SCF1]
 gi|308747894|gb|ADO47646.1| diguanylate cyclase [Enterobacter cloacae SCF1]
          Length = 458

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 112/253 (44%), Gaps = 20/253 (7%)

Query: 26  TFMIYFSIFFSIFIAT-----------VIFIANIFLFYIGLTPFYGLEYILVENLSLVII 74
            F+ +  I     I T            + I+ + + +  +T  Y  + +L     L ++
Sbjct: 204 MFVAWCVILIIAIITTRFRNMYWTGIYFVCISYMLMSFQLITSEYSTDNMLYRTRMLEVL 263

Query: 75  SITISLLLGYISGSIL-KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NE 127
           S  + + + +I+  IL K     Y    Q S  D L+ L N   F  +L           
Sbjct: 264 STLVFVFILFINSFILYKNSNTKYKNAYQNSIRDHLTMLYNRRYFYDALMKLIPCITVKN 323

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            LSI+  DID+FK IND +GH  GDKVI F++ ++  +      + R+GGEEFA    G 
Sbjct: 324 PLSIIVCDIDFFKSINDKYGHQHGDKVIQFIAIKIQSLLRQNDILARIGGEEFALLLPGV 383

Query: 188 SEQEAAILANDLRKIIENS-QINISSGPSIHITISAGIAERCHKEPISTI-IYRADQALY 245
           +E+ A I+A  +   +      N     S  ITIS GI           + I RAD A+Y
Sbjct: 384 NEENAKIIAERICHAVSQHDSKNTDIHQSERITISMGIYSATDNTMTEDVYISRADDAMY 443

Query: 246 VAKKSGRNRVVCF 258
            AK +GRN V  +
Sbjct: 444 KAKHAGRNCVKVW 456


>gi|238762889|ref|ZP_04623857.1| Diguanylate cyclase [Yersinia kristensenii ATCC 33638]
 gi|238698900|gb|EEP91649.1| Diguanylate cyclase [Yersinia kristensenii ATCC 33638]
          Length = 332

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 16/229 (6%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
           IA  +  A IF       PF      L    SL +I I    LLG ++    K L  +  
Sbjct: 112 IACSLLTAWIFNL-----PFKPETSPLQVYASLPMI-IIYPSLLGLVTYRTAKRLAENKE 165

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            + ++S  D L+GL N   +   L         Y    +++  DID FK IND FGH VG
Sbjct: 166 ELLRISVRDGLTGLYNRRHWEHQLHNQFDSCRRYQHGATLILLDIDNFKSINDTFGHAVG 225

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+ I  L+++L++       VGR GG+EF A    ++ ++   +   +++ + +      
Sbjct: 226 DEAITILAEELLLGLRAIDIVGRYGGDEFGAILPNTTAEQTREILLRIQEKLADLVF--I 283

Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
             P++ + +SAGIA+  H        +  AD ALY+AK +GRNR+   S
Sbjct: 284 QAPTLQLRVSAGIADYRHDMVNYQQWLKAADSALYLAKDNGRNRIELAS 332


>gi|221068675|ref|ZP_03544780.1| response regulator receiver modulated diguanylate cyclase
           [Comamonas testosteroni KF-1]
 gi|220713698|gb|EED69066.1| response regulator receiver modulated diguanylate cyclase
           [Comamonas testosteroni KF-1]
          Length = 312

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 51/189 (26%), Positives = 89/189 (47%), Gaps = 12/189 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S+  EL ++  +++++  +D L+GL+N       L          +  L+++  D+D+FK
Sbjct: 119 SVSAELHLANQKLNEMVELDALTGLVNRRGLDRMLHAEIAAARRESRPLTLMLCDLDHFK 178

Query: 141 QINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GH  GD+ +  +   L            R GGEEFA     +    +   A  L
Sbjct: 179 HFNDTYGHVQGDECLKQVGRLLREVCVRPRDIAARYGGEEFALVLPNTPRSGSMTFARAL 238

Query: 200 RKIIENSQINISSG-PSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256
            ++++  +I        I +T+S GI      E     +++ RAD+ALY AK  GRNR  
Sbjct: 239 GQMLKFLKIRPPGTVEDIPLTLSGGITTCIPDEHTSAESMLMRADEALYAAKSQGRNRFF 298

Query: 257 CFSDIENNT 265
            F +++ +T
Sbjct: 299 SF-EMQMDT 306


>gi|241202885|ref|YP_002973981.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240856775|gb|ACS54442.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 392

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 75/251 (29%), Positives = 117/251 (46%), Gaps = 14/251 (5%)

Query: 12  WLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL 71
           WL   +        T ++Y     S  +   + I++  L  +G  P         E+LSL
Sbjct: 139 WLARAEAPAPLLGIT-VLYTLTAISFVLCAAVLISDGKL-VLGKAP-----SNWAEDLSL 191

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKL 129
            +  I     +G +S ++ +    + +R+   +  D L+GLLN  A     G+       
Sbjct: 192 AV-CIAGMTGIGALSLALHQWRLAARHRLD--AITDPLTGLLNRRALFDQYGTRPMGTTT 248

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++ FDID+FK +ND FGH  GD+V+   S +L     T     RLGGEEF         
Sbjct: 249 AVIVFDIDHFKSVNDRFGHAAGDRVLNVFSGELSAHCRTGDTAARLGGEEFVLVLKEIMP 308

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAK 248
             A + A  +R+  E  +I+I     +  T+S G+A    K     T++  AD+ALYVAK
Sbjct: 309 GRAELTAERIRRAFEAREIHIDD-EVLTCTVSVGVAPGRSKSLDFDTMLSAADKALYVAK 367

Query: 249 KSGRNRVVCFS 259
           ++GRNRV   S
Sbjct: 368 RAGRNRVELAS 378


>gi|167031258|ref|YP_001666489.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas putida
           GB-1]
 gi|166857746|gb|ABY96153.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida GB-1]
          Length = 342

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 9/178 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
              + E       + +L+  D L+   N   F                 L+ +  DID F
Sbjct: 164 AEDITEKKQLEGELQRLATTDVLTQSSNRRHFFECAQQAFDSAREDGTPLAFLLLDIDDF 223

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND++GH  GD+V+  ++D    V       GR+GGEEFAA   G + + A  +A  L
Sbjct: 224 KRINDSYGHQEGDQVLQHIADSGKAVLRRGDLFGRIGGEEFAAVFPGCNAEVAEQIAERL 283

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
           ++ I+    +     +  +T+S G+     ++  + ++  RAD A+Y AK+ G+N++V
Sbjct: 284 QRQIQRLSFSHGQ-QTYGVTVSQGLTGLTEEDVTLDSLYARADAAMYQAKRQGKNQIV 340


>gi|170720347|ref|YP_001748035.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619]
 gi|169758350|gb|ACA71666.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619]
          Length = 754

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 10/188 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYN---EKLSIVFFDIDYF 139
             +L +L  +   + Q +  D L+ L+N   F       L   N    +L+++F DID+F
Sbjct: 273 NMLLSQLDQARASLQQAAHYDALTSLVNRRGFNQVFAERLAEQNPEVHRLAVMFLDIDHF 332

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND+ GH  GD+++  ++  +     +   V R GG+EF      +   EA  LA  +
Sbjct: 333 KRINDSLGHDAGDQLLKVIASHIKAATRSHDLVARFGGDEFCVVTSLNGPDEARHLAQRI 392

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
            + +++  I++  G  + +T S G++           ++  AD ALY +K SGRN +  F
Sbjct: 393 MQRMKD-PIDL-GGRRMVMTTSIGVSIYPDDGLTAEELLKHADLALYQSKGSGRNSLHFF 450

Query: 259 SDIENNTC 266
           +    N  
Sbjct: 451 NSGLKNRA 458


>gi|328545032|ref|YP_004305141.1| diguanylate cyclase (GGDEF domain) [polymorphum gilvum SL003B-26A1]
 gi|326414774|gb|ADZ71837.1| Putative diguanylate cyclase (GGDEF domain) [Polymorphum gilvum
           SL003B-26A1]
          Length = 412

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 65/237 (27%), Positives = 108/237 (45%), Gaps = 11/237 (4%)

Query: 29  IYFSIFFSIFIATVIFIANIFLF-YIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           +Y   +F I  A + F  N+ LF    + P       +  ++    + I I   +  +  
Sbjct: 151 LYSGFWFGI-SALIDFAVNLSLFVAFRIAPVTSHAEAMQNDIYKGYMLIMIVTAVASVIL 209

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           +    +     R+   +R D L+GL N  AF      + ++        S+  FD+D FK
Sbjct: 210 AFAMVIEREERRLRIQARRDPLTGLANRRAFFEQAQDWLDRHAATPKTFSVALFDLDDFK 269

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND FGH  GD+++   ++            GRLGGEEF      +    A +LA+ LR
Sbjct: 270 SVNDRFGHAAGDEMLTTFAEVCRERLRPGDLAGRLGGEEFVLFLPDTPADAALVLADRLR 329

Query: 201 KIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                +     +G ++  T SAG+   RC ++ +  ++  AD ALY AK++GRN+VV
Sbjct: 330 HAFAQAA-ETRTGGTLAATTSAGVHGGRCGEDDLDRVLAVADAALYSAKRAGRNQVV 385


>gi|254561421|ref|YP_003068516.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens
           DM4]
 gi|254268699|emb|CAX24658.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL) with
           PAS sensor [Methylobacterium extorquens DM4]
          Length = 777

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 12/188 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           +   + E   +  RI+ ++  D L+GL N + F + L              +++  D+D 
Sbjct: 334 AAIDVTEQRRAEARITHMAHHDALTGLPNRALFTTRLAAAITEHARTGAGAALLCLDLDK 393

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND  GHP GD ++  +++++         V RLGG+EFA           + +A  
Sbjct: 394 FKLVNDTLGHPAGDTLLRAVAERITACLHGEDLVARLGGDEFAVLLRTPDAGTVSAVAGR 453

Query: 199 LRKIIENSQINISSG-PSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +   IE     +  G     I +S GIA    H     T++  AD ALY AK  G +   
Sbjct: 454 I---IEALSHPVRLGDRECQIGVSIGIACLPEHGTDSDTLLRHADLALYRAKADGGSIAH 510

Query: 257 CFSDIENN 264
           CF    ++
Sbjct: 511 CFEAAMDS 518


>gi|254521437|ref|ZP_05133492.1| hypothetical protein SSKA14_561 [Stenotrophomonas sp. SKA14]
 gi|219719028|gb|EED37553.1| hypothetical protein SSKA14_561 [Stenotrophomonas sp. SKA14]
          Length = 686

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 107/278 (38%), Gaps = 24/278 (8%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYI-----------GLTPFY 59
           +W+      E  +        S+   + I  + +       +             +   +
Sbjct: 156 LWIAFRLRAEQHNTLRLRALASLVMGLAIVGMHYTGMAAARFPEGSICGAVGSGAIDTRW 215

Query: 60  GLEYILVENLSLVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
               ++V  ++ + I++  SL    +   +G +   L  + N++ Q +  D L+ L N  
Sbjct: 216 LAVLVIVTTVATLGIALVASLFDRQMRVRTGLLADSLARANNKLIQAALHDPLTQLPNRM 275

Query: 117 AF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
                    I         ++++F D+D FK +ND +GH +GD+++  ++ ++  +    
Sbjct: 276 LLQDRIEQAIEKARRRGHTVAVMFCDLDGFKAVNDAYGHQLGDRLLVAVAQRIGGLLRPQ 335

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               RLGG+EF          +A ++A  +  I    +        + ++ S GIA    
Sbjct: 336 DTFARLGGDEFVIVLAIDIPDDAVVVAERI--IAAAGEPFTLDAAELQVSASLGIALYPD 393

Query: 230 KEPIS-TIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
                  ++  AD A+Y  K++GRN    F+     + 
Sbjct: 394 DAGNERELMAHADAAMYHTKETGRNGYTFFTPSMQLSA 431


>gi|307154898|ref|YP_003890282.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
 gi|306985126|gb|ADN17007.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
          Length = 785

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 9/180 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           +   I   L  +  R  +L+ +D L+GL N   F+  L           + L  V  D+D
Sbjct: 606 LIARIHNRLERTQMR-RRLAEVDSLTGLSNRRKFVEDLTRLLKLAQRQKQPLCYVLIDLD 664

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FKQ+ND +GH +GD+V+  L   L   F     +GR GGEEFA    G ++ +A     
Sbjct: 665 HFKQVNDKYGHDMGDRVLRQLGKLLKRQFRCEDLIGRWGGEEFALGLYGMNKSQAISRLK 724

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
           D+ +     +  ++      +T SAGIA        +  +   AD ALY AKK GRN+V+
Sbjct: 725 DILEQWRQEEFRVTDNHCFCVTFSAGIAMYPTDGAELQNLYRFADVALYRAKKQGRNQVI 784


>gi|71280714|ref|YP_267304.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71146454|gb|AAZ26927.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 589

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 59/202 (29%), Positives = 95/202 (47%), Gaps = 12/202 (5%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------- 118
           V N+ L+I  + ++L L  + G+    L  ++ R+ +L+  D L+G+ N   F       
Sbjct: 375 VVNIQLMISILMVTLALLVLWGA---RLLKAHKRVRELAEYDPLTGIYNRGHFTHVTNSA 431

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           +    +  + LS++ FD+D+FK++ND+FGH  GD  +         +        RLGGE
Sbjct: 432 LKYCKNAQQDLSVIMFDLDHFKKVNDSFGHACGDWALKETIKVCQRIGRKNDIFARLGGE 491

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTII 237
           EF       +   A + A   R  IE   I   SG    IT S G+ + +     +  ++
Sbjct: 492 EFCLVLTCCTIDVAMLRAEACRAAIEEI-ITEESGNDFSITASFGVTDIKRSGFTLDKLL 550

Query: 238 YRADQALYVAKKSGRNRVVCFS 259
             AD A Y +K +GRNRV  F 
Sbjct: 551 ADADMAAYASKNAGRNRVTLFE 572


>gi|295836366|ref|ZP_06823299.1| LOW QUALITY PROTEIN: integral membrane phosphodiesterase
           [Streptomyces sp. SPB74]
 gi|295825988|gb|EDY45607.2| LOW QUALITY PROTEIN: integral membrane phosphodiesterase
           [Streptomyces sp. SPB74]
          Length = 916

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps = 21/201 (10%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           ++   + E      ++   +  D L+ L N + F   +          +  ++++F D+D
Sbjct: 446 LNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTRRVRRALKGRRTGDTGVAVLFIDLD 505

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-------EQ 190
            FK +ND+ GH  GD+++   + +L     +     RLGG+EFAA  +G         EQ
Sbjct: 506 GFKGVNDSIGHQAGDELLVQAARRLHESVRSGDTAARLGGDEFAALIVGEGTRDVAEREQ 565

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +   LA  LR  +  S   +  G  + I  S G+A   +      ++  AD A+Y AK  
Sbjct: 566 QIKDLAERLR--VALSLPYMIEGHEVRIAASIGVAFAENGLGAGELLRNADLAMYRAKGL 623

Query: 251 GRNRVVCF-----SDIENNTC 266
           G++RV  +     ++    T 
Sbjct: 624 GKDRVELYVPQLQTEAARRTA 644


>gi|241661870|ref|YP_002980230.1| PAS/PAC sensor containing diguanylate cyclase [Ralstonia pickettii
           12D]
 gi|240863897|gb|ACS61558.1| diguanylate cyclase with PAS/PAC sensor [Ralstonia pickettii 12D]
          Length = 972

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 80/179 (44%), Gaps = 10/179 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDI 136
           Y     + E   S   +S+++R D L+GL N       L +  E        L +++ D+
Sbjct: 792 YAFVQDVTEAKRSEMELSRMARFDALTGLPNRYELYERLRAALERRQRLPAPLGVLYLDV 851

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAIL 195
           D+FK IND +GH  GD V+  ++ +L         V RL G+EF        +  +A   
Sbjct: 852 DHFKHINDTYGHAAGDAVLVEVAHRLQRAVRRSDTVARLAGDEFIILLDPIDAPDDALHT 911

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           A  +   I    I +     +H+T S G+A    +     T +  AD+ALY AK  GRN
Sbjct: 912 AQKIVGAIR-PPITLRGDTILHVTTSVGVACPGPEVREPDTALREADRALYWAKSRGRN 969


>gi|78776728|ref|YP_393043.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497268|gb|ABB43808.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurimonas denitrificans DSM 1251]
          Length = 707

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 95/195 (48%), Gaps = 11/195 (5%)

Query: 81  LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           ++ YI     + E      +I QL+  D L+ L N   F   + +Y       NE  +I+
Sbjct: 261 IVNYIGMSRDITEAKNKEEKIHQLAFYDFLTKLPNAKLFQQEVEAYIKSTHYNNETFAIL 320

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F D+D FK +ND+ GH +GD ++  ++ +L  +      + RLGG+EF   A   +    
Sbjct: 321 FLDLDNFKWVNDSLGHQIGDLLLIEIAAKLKEIISQDSIISRLGGDEFVILAPYENLLTI 380

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSG 251
           + LAN +   +++  I + +   ++++ S GI+      E  + ++  AD A+Y +K  G
Sbjct: 381 SQLANTILCSVKD-PIKVQN-REVNVSWSIGISLYPQNGENYNDLLKNADAAMYESKNRG 438

Query: 252 RNRVVCFSDIENNTC 266
           +N    F+D+ N   
Sbjct: 439 KNTFRYFNDMMNQDA 453


>gi|108763499|ref|YP_631206.1| HAMP domain/GAF domain/GGDEF domain-containing protein [Myxococcus
           xanthus DK 1622]
 gi|27804877|gb|AAO22911.1| hypothetical protein [Myxococcus xanthus]
 gi|108467379|gb|ABF92564.1| HAMP domain/GAF domain/GGDEF domain protein [Myxococcus xanthus DK
           1622]
          Length = 645

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 9/167 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+G+ N       +         +   L+++  D+D+FK+IND  GH VGD+ 
Sbjct: 443 KLTMTDPLTGVPNRRHLFQRMELELARSNRFGTPLALLMVDVDHFKRINDLAGHRVGDET 502

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG- 213
           +  + D L +       + R GGEEF      +++ EA  +A  LR+ +  S   +  G 
Sbjct: 503 LRRVCDVLRLRVRKVDTLARYGGEEFVILLPQTNKAEAMEVAEKLRRAVAESVELVQPGL 562

Query: 214 PSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFS 259
           P  H+T+S G +           ++  AD ALY +K++GRNR   + 
Sbjct: 563 PGNHVTVSIGASHFPSDASAQEELVDCADAALYFSKRTGRNRTTQYE 609


>gi|17545094|ref|NP_518496.1| hypothetical protein RSc0375 [Ralstonia solanacearum GMI1000]
 gi|17427384|emb|CAD13903.1| probable signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum GMI1000]
          Length = 972

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 10/179 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
           Y     + E   +   +S+++  D L+GL N       L             + +++ D+
Sbjct: 792 YAFVQDVTEAKRNEMELSRMAHFDALTGLANRYELYERLRAALERRQRQPAPMGVLYLDV 851

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAIL 195
           D+FK+IND +GH  GD V+  ++ +L         V RL G+EF        +  +A   
Sbjct: 852 DHFKRINDTYGHAAGDAVLVEVARRLQHTVRRTDTVARLAGDEFVILLDPIDTPDDALHT 911

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
           A  +   I    I +    ++++T S G+A           ++  AD+ALY AK  GR+
Sbjct: 912 AGKVVAAIR-PPIQLRGDIALNVTASIGVACPSPEAADADAVLREADRALYWAKSRGRD 969


>gi|194364922|ref|YP_002027532.1| diguanylate cyclase/phosphodiesterase [Stenotrophomonas maltophilia
           R551-3]
 gi|194347726|gb|ACF50849.1| diguanylate cyclase/phosphodiesterase [Stenotrophomonas maltophilia
           R551-3]
          Length = 686

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 108/278 (38%), Gaps = 24/278 (8%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYI-----------GLTPFY 59
           +W+      E  +        S+   + I  + +       +            G+   +
Sbjct: 156 LWIAFRLRAEQRNTLRLRALASLVMGLAIVGMHYTGMAAARFPEGSICGAVGSGGIDTRW 215

Query: 60  GLEYILVENLSLVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
               ++V  ++ + I++  SL    +   +G +   L  + +++ Q +  D L+ L N  
Sbjct: 216 LAVLVIVTTVATLGIALVASLFDRQMRVRTGLLADSLAHANDKLIQAALHDPLTQLPNRM 275

Query: 117 AF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
                    I         ++++F D+D FK +ND +GH +GD+++  ++ ++  +    
Sbjct: 276 LLQDRIEQAIEKARRRGRAVAVMFCDLDGFKAVNDAYGHQLGDRLLVAVAQRIGGLLRPQ 335

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               RLGG+EF          +A ++A  +  I    +        + ++ S GIA    
Sbjct: 336 DTFARLGGDEFVIVLAIDIPDDAVVVAERI--IAAAGEPFTLDAAELQVSASLGIALYPD 393

Query: 230 KEPIS-TIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
                  ++  AD A+Y  K++GRN    F+     + 
Sbjct: 394 DASNERELMAHADAAMYHTKETGRNGYTFFTPSMQLSA 431


>gi|170747189|ref|YP_001753449.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170653711|gb|ACB22766.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 298

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 59/172 (34%), Positives = 86/172 (50%), Gaps = 11/172 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQIND 144
           + L      + +L+  D L+G  N  AF +   +        + +S +  DID+FK+IND
Sbjct: 120 ERLTTMQEELIRLAETDPLTGSYNRRAFFNRARAAVAQDPRPDAVSAILLDIDHFKRIND 179

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD  I  ++D +          GRLGGEEFA    G    EA   A  LR  ++
Sbjct: 180 EHGHDVGDVAIKAVADLIS----GSGIAGRLGGEEFAVILPGRDLGEAVAHAERLRGDVQ 235

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +I  + GP I ++ S G++     + +  ++ RAD ALY AK  GRNRVV
Sbjct: 236 ALRIRGAKGP-IALSCSFGVSTWRDGDSVEALVKRADVALYAAKGGGRNRVV 286


>gi|15596044|ref|NP_249538.1| hypothetical protein PA0847 [Pseudomonas aeruginosa PAO1]
 gi|9946743|gb|AAG04236.1|AE004519_7 hypothetical protein PA0847 [Pseudomonas aeruginosa PAO1]
          Length = 735

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 10/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
             + +      ++ +++  D L+GL N  AF   LG           +L++++ D+D FK
Sbjct: 555 RDVSDQIAYQQQLLEMAYRDPLTGLGNRKAFDEQLGQALLRAGSGGSELALLYLDLDRFK 614

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND FGH +GD ++  +++++      P    RLGG+EFA     S E     LA  L 
Sbjct: 615 EVNDRFGHDIGDALLRTVAERVRSTLRQPDKAYRLGGDEFAVLLEDSQENNPQRLAERLL 674

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +    I ++      +T S GIA    H      ++  AD A+Y AK+  RN    +
Sbjct: 675 AAL-VQPIALNGERIDFVTPSIGIALYPRHAGDAEGLVRAADSAMYEAKRQ-RNHYCLY 731


>gi|32477591|ref|NP_870585.1| GGDEF family protein [Rhodopirellula baltica SH 1]
 gi|32448145|emb|CAD77662.1| GGDEF family protein [Rhodopirellula baltica SH 1]
          Length = 346

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 16/189 (8%)

Query: 79  SLLLGYISG-SILKELFIS-YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------L 129
           S L  ++S  SI  +   + YN +++    D L+G LN    + ++     +       L
Sbjct: 162 SFLFRFLSADSIETQYHETVYNALTR----DALTGALNKRFLMEAIDRELSRSTRAKLEL 217

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID+FK +ND  GH VGD V+     ++  +  T   + R GGEEF      +  
Sbjct: 218 AVIMLDIDHFKSVNDTHGHLVGDDVLRTFGKRIQALCRTDDLLARYGGEEFCLLLAATGH 277

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVA 247
            +A  +A   R  I  +    S GP + IT S G++     +P  +  ++  ADQ LY A
Sbjct: 278 HDAMEIAERCRATIAGTPFQTSIGP-LEITASFGVSVMDPDQPSTVRALLQDADQHLYDA 336

Query: 248 KKSGRNRVV 256
           K +GRN+V 
Sbjct: 337 KNAGRNQVR 345


>gi|293392985|ref|ZP_06637302.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291424519|gb|EFE97731.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 358

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 68/256 (26%), Positives = 118/256 (46%), Gaps = 22/256 (8%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS----------LVIISIT 77
            +  S+F   FI+ +    N   F +   P   +  +L++ ++          L II+ +
Sbjct: 101 FLLISLFSMFFISAIALTDNFVAFCLHSVP-SAITILLLDGMNNTVRIVFTSVLPIIAFS 159

Query: 78  ISLLL----GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS--- 130
           I  L+       + +++  L+   +++S LS +D L+GL N     + L       +   
Sbjct: 160 IHHLMLKRSEAFTQALVANLYDERDKLSDLSMLDPLTGLYNRRGLENKLNQLLAPTAGRH 219

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            +V  DID FK  NDN+GH +GD+ +  ++  +     +   V R GGEEF       SE
Sbjct: 220 FVVLLDIDRFKAYNDNYGHTMGDQALVQVAAAIRDAVRSRDIVVRYGGEEFLVLLTNVSE 279

Query: 190 QEAAILANDLRKIIENSQINISSGP--SIHITISAGIAERCHKEPISTIIYRADQALYVA 247
             AA LA  +R+ +   QI        +  +T+SAGI+    +  + + I  AD ALY A
Sbjct: 280 AYAAQLAERVRQRVLGLQIPHRFNQLATTTVTLSAGISAL-DQLDVKSAIRAADAALYQA 338

Query: 248 KKSGRNRVVCFSDIEN 263
           K +GRN +    + ++
Sbjct: 339 KGNGRNTIQLAENAQS 354


>gi|171059151|ref|YP_001791500.1| PAS/PAC sensor-containing diguanylate cyclase [Leptothrix cholodnii
           SP-6]
 gi|170776596|gb|ACB34735.1| diguanylate cyclase with PAS/PAC sensor [Leptothrix cholodnii SP-6]
          Length = 719

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 13/191 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDI 136
           Y     + EL     ++ QL+R+D L+GL N   F   L     +        ++++ DI
Sbjct: 529 YAMSMDISELKAVEAQLRQLARVDHLTGLANRLQFDDRLHEALRRARRTALKPALLYIDI 588

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D+FK IND  GH  GD V+   + +L         V RLGG+EF         + EA  +
Sbjct: 589 DHFKGINDRHGHAAGDAVLTEFARRLKGAVRDTDTVARLGGDEFVVLLEQLHDQDEARRV 648

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHK---EPISTIIYRADQALYVAKKSGR 252
           A+ +   +  +  ++++G  +  T S G+           +  ++  AD ALY AK +GR
Sbjct: 649 ASKIH-AVMQTPFDLAAGF-LPATASIGVGLLTGDVDARSLKALMATADAALYEAKHAGR 706

Query: 253 NRVVCFSDIEN 263
           N     +  EN
Sbjct: 707 NTFRLRTHGEN 717


>gi|161521657|ref|YP_001585084.1| RNase II stability modulator [Burkholderia multivorans ATCC 17616]
 gi|189352176|ref|YP_001947803.1| RNase II stability modulator [Burkholderia multivorans ATCC 17616]
 gi|160345707|gb|ABX18792.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia multivorans ATCC 17616]
 gi|189336198|dbj|BAG45267.1| signal transduction GGDEF/EAL domain protein [Burkholderia
           multivorans ATCC 17616]
          Length = 667

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 93/192 (48%), Gaps = 19/192 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDID 137
           SG  + E   +  R+++L+  D L+GL N  A    + +           ++ I+F D+D
Sbjct: 218 SGIDITEERNAQQRLTELANTDVLTGLPNRHAISERIRTVIAQQTGDTPGQVGILFLDLD 277

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAA 193
            FK++ND++GH  GD+++  +S  +     +   + RLGG+EF       +    E  A 
Sbjct: 278 NFKRVNDHYGHITGDRLLQDVSAIISGCLPSGATLARLGGDEFLVLFEQGTRALLEATAQ 337

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
           I+   LR  I    +       ++ + S GIA    H + + T+I  AD A+YVAK++G+
Sbjct: 338 IILERLRTPIHLGLM------EVYTSCSIGIAMHPQHGDSLETLIRNADTAMYVAKEAGK 391

Query: 253 NRVVCFSDIENN 264
           +    FS   N 
Sbjct: 392 HTYRVFSLEMNQ 403


>gi|91779130|ref|YP_554338.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
 gi|91691790|gb|ABE34988.1| Putative diguanylate cyclase/phosphodiesterase(GGDEF & EAL domains)
           with PAS/PAC sensor(s) [Burkholderia xenovorans LB400]
          Length = 1059

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 13/188 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + +   S  RI  L+  D L+ L N   F+  LG          ++++++F D+D FK 
Sbjct: 615 DITDRKKSEARIQFLAEHDVLTELPNRELFVKRLGVVLGNARRTGQRVAVLFIDLDRFKN 674

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILANDL 199
           IND+ GH +GD ++  +S +L+    T   V RLGG+EF      + ++      +   L
Sbjct: 675 INDSLGHHIGDSLLRSVSRRLLQAVRTNDTVSRLGGDEFTVILNSVSNAADVTRTIEERL 734

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             ++   Q +   G ++ ++ S G+A      E I T++  AD A+Y AK +GRN V  F
Sbjct: 735 LPLVR--QPHEVGGVTLQVSCSVGVALFPDDGEDIETLMQNADAAMYQAKGAGRNLVKFF 792

Query: 259 S-DIENNT 265
           + DI   T
Sbjct: 793 APDIAERT 800


>gi|299134767|ref|ZP_07027959.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Afipia sp. 1NLS2]
 gi|298590577|gb|EFI50780.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Afipia sp. 1NLS2]
          Length = 904

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 7/183 (3%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQ 141
           ++   + E   + +RI+ ++R D L+ L N + F   L       E L+++  DID FKQ
Sbjct: 462 LTLEDITERQRAEDRIAHMARYDALTDLPNRTMFRDHLDKMLKKEENLAVLSIDIDEFKQ 521

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLR 200
           +ND  GH VGD+++  ++++L         V RLGG+EFA    G  E+ E   L   + 
Sbjct: 522 VNDTLGHFVGDELLVSIANRLSGCMERDDIVARLGGDEFAIIRHGVQERSELIPLIERVH 581

Query: 201 KIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I        +G  ++   S GIA   C    +  ++  AD ALY AK SGR     F 
Sbjct: 582 AAIRV--PYDCTGHHLNADASIGIAMSPCDGSELEGLLRNADLALYAAKGSGRRTYRFFE 639

Query: 260 DIE 262
              
Sbjct: 640 PEM 642


>gi|219667612|ref|YP_002458047.1| response regulator receiver modulated diguanylate cyclase
           [Desulfitobacterium hafniense DCB-2]
 gi|219537872|gb|ACL19611.1| response regulator receiver modulated diguanylate cyclase
           [Desulfitobacterium hafniense DCB-2]
          Length = 455

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 78/176 (44%), Gaps = 11/176 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           E     +R  + S ID L+ + N   F                 LS++  D+D FK+ ND
Sbjct: 278 EQKKYRDRQKENSYIDELTQIANRRKFNETVTIEWNRARRNGNSLSVLMIDVDCFKKYND 337

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GDK +  ++  L   V  +   V R GGEEFA     +    A ++   LR+ +
Sbjct: 338 FYGHLEGDKCLYKIAQTLKSNVKRSSDLVARWGGEEFACVLTDTDRIGAMLVGERLRRAV 397

Query: 204 ENSQINIS-SGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVV 256
               I    S     +T S G+A         +  ++++AD ALY AKK+GRN V 
Sbjct: 398 VKLNIPSEISDVDRVVTASIGVATALPSVDNSLEELLHKADMALYKAKKTGRNCVC 453


>gi|192290385|ref|YP_001990990.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
 gi|192284134|gb|ACF00515.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
          Length = 284

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 114/229 (49%), Gaps = 18/229 (7%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI---ISITISLLLGYISGSILKELFI 95
           I T+IF+ +     +G      +E   V   SLV+   +S T+S  + Y S  ++++L  
Sbjct: 28  IVTIIFLIS----DLGTDLHATVEVGAVVKASLVVALGVSTTLSGAMAYRSARLMRQLTS 83

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
           +   + ++SR D L+GLLN   F  +            +++  +  DID FK IND++GH
Sbjct: 84  TRAELMRMSRTDPLTGLLNRRGFDDAAATVLAEAADAGQRVVALMCDIDRFKAINDHYGH 143

Query: 149 PVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
            +GD+V+A +   L        M + R GGEEFA   +G S+ +A   A  L ++     
Sbjct: 144 NIGDRVLAEIGGILRDFAAPRGMLIARHGGEEFAGLMVGVSDAQANDYAMTLCRMCATDV 203

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                G  + +T+S G+A     E +  ++ RAD ALY AK  GRN VV
Sbjct: 204 P--CDGRLVPVTMSFGVAAYAGGE-LPALMRRADLALYRAKDLGRNCVV 249


>gi|221067706|ref|ZP_03543811.1| diguanylate cyclase [Comamonas testosteroni KF-1]
 gi|220712729|gb|EED68097.1| diguanylate cyclase [Comamonas testosteroni KF-1]
          Length = 400

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 113/242 (46%), Gaps = 14/242 (5%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE 92
           ++ SI      F     ++ +G +    L       L+LV I +  SLL   +  +I   
Sbjct: 155 LWLSIIFTAYTFTRPALIWLLGYSDLRSLPRSPYWILTLVSI-LNFSLLFTVVMTAIA-- 211

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFG 147
           +  + +++ +    D L+ +LN  +F        +      ++++  DID+FK+IND +G
Sbjct: 212 VKETVDKLRKERDFDALTQVLNRRSFQEHAQKRLDDPRLYPMAVLACDIDHFKRINDAWG 271

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GDKV+  +S  L         V R GGEEF     G +  +A ++A  +++ + +  
Sbjct: 272 HERGDKVLQLVSATLQNNVREQDLVARFGGEEFVMLLTGITPCDAELIAQRIQRDLGSKN 331

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV----VCFSDIEN 263
             + SGP   +T+S GI+       +   +  ADQ LY AK +GR+RV    V + D  +
Sbjct: 332 PVLPSGP--KLTMSFGISSITKSFQLEQALKEADQLLYQAKNAGRDRVHVSGVVYPDSSD 389

Query: 264 NT 265
            T
Sbjct: 390 KT 391


>gi|117921874|ref|YP_871066.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117614206|gb|ABK49660.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 483

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 95/222 (42%), Gaps = 21/222 (9%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI------LKELFISYNR----ISQ 102
           I  T +  +  ++   L +V + +T + ++   +  +      L+EL +   +    +  
Sbjct: 261 IDETNYLLIYQVIAATLLVVCLLVTRTYMISRYNRRLTDKNQQLEELRLQLEQSNTELEF 320

Query: 103 LSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+ L N   F            S    + +V  DID+FK+IND  GH VGD ++
Sbjct: 321 LSTHDPLTKLYNRHYFNRQFVHEHRAAASTQGAICLVMLDIDFFKEINDTLGHSVGDTIL 380

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             LS  L         V R GGEEF      +S +    L   +   I            
Sbjct: 381 MELSSVLQHCVRESDVVARWGGEEFVILCHNTSLEAVKSLCQRITTAISEYHF----SGD 436

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +T S GIA+    EP+ +   RAD+ALY AK  GR+++  
Sbjct: 437 VQLTCSFGIAKLAANEPMQSCFERADKALYQAKALGRDQICV 478


>gi|330957433|gb|EGH57693.1| PAS:GGDEF protein [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 757

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYF 139
            S L+E       ++ ++  D L+ L N +  ++ L    E L       +++F D+D F
Sbjct: 309 QSRLEERERISEALAYVAFHDELTSLHNRAYLMNELTRAFETLDPRYERATVLFLDLDGF 368

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
           K +ND+ GH  GD+++  ++++L +   +   + R+GG+EFA   +G  +   A  +A  
Sbjct: 369 KVVNDSMGHLAGDQLLKGVANRLQMCVRSNDVLARIGGDEFAILLMGKDQPDTAVKMAER 428

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           +   +  +      G  I I+ S GI            ++  AD A+Y AKK GR R   
Sbjct: 429 IVSQLHTALQ--IEGQDIFISCSIGIVTAGESHTKPEELLRDADVAMYSAKKQGRGRWSI 486

Query: 258 FSDIENNTC 266
           F+       
Sbjct: 487 FNASMREAA 495


>gi|291279477|ref|YP_003496312.1| hypothetical protein DEFDS_1087 [Deferribacter desulfuricans SSM1]
 gi|290754179|dbj|BAI80556.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 404

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 86/173 (49%), Gaps = 8/173 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQI 142
           +++L  +  +  + + +D L+ + N +               Y + LS++  DID FK++
Sbjct: 230 IQQLQDTIKQFKKEAIVDSLTNIYNRNYLERKYPEEFEKFKRYGQPLSVIMLDIDDFKKV 289

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           NDNFGH +GD V+ + +  +           R GGEEF      +  ++A ++AN + K 
Sbjct: 290 NDNFGHQIGDNVLRYFATVIKNNIRKVDIPFRYGGEEFLILLPHTKLEQAMVVANRIHKE 349

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + ++   +  G ++ +T S G+ E    + + ++I R D  L   KK G+NRV
Sbjct: 350 LNDTMFKVK-GLTLKVTASIGVTEARESDSMESLIKRVDDLLLKVKKEGKNRV 401


>gi|149175821|ref|ZP_01854439.1| FHA domain/GGDEF domain protein [Planctomyces maris DSM 8797]
 gi|148845268|gb|EDL59613.1| FHA domain/GGDEF domain protein [Planctomyces maris DSM 8797]
          Length = 559

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 17/194 (8%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKL 129
            IS    ++S ++LK L  S+  I + ++ D L+GL+N  +F            S     
Sbjct: 362 LISWASQFLSNTLLKVL--SHATIERQAKQDGLTGLVNRRSFDELFEDQFQRAQSAEMAC 419

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-----PMFVGRLGGEEFAAAA 184
           S++  D+D+FK +ND +GH  GD+V+  ++  L            +   R GGEE A   
Sbjct: 420 SLILIDLDHFKSVNDTYGHQAGDEVLRRVAQILRERIQEIRSSDNVIAARYGGEELAILL 479

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQ 242
                     +A  +R  IE+S I  +    I +T S GI+       + +  ++  AD 
Sbjct: 480 PEVGLTGTERIAEVIRHSIESSVIKFNEVH-IPVTASLGISTYSPHIMDSVQAMLAAADS 538

Query: 243 ALYVAKKSGRNRVV 256
           ALY AK  GRNRV 
Sbjct: 539 ALYQAKAEGRNRVC 552


>gi|114706340|ref|ZP_01439242.1| diguanylate cyclase [Fulvimarina pelagi HTCC2506]
 gi|114538201|gb|EAU41323.1| diguanylate cyclase [Fulvimarina pelagi HTCC2506]
          Length = 376

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 113/244 (46%), Gaps = 13/244 (5%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI 85
           T ++ +     +++A   ++AN       +  + G   +L        +++   L + Y+
Sbjct: 129 TMVLTYGSGIVVYVAARPYVANTICIGAAIPAYVG--TVLCSETWRSGMAVVYVLAIVYV 186

Query: 86  SGSILK------ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDID 137
           + +  +      EL+ +   +   +  D L+GL N  A   +L S      ++I+F D+D
Sbjct: 187 AKATAQQYRAFFELYRTRKCLRDCALTDALTGLPNRRALDEALDSVPKGSDVAILFIDLD 246

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND FGH  GD ++  ++  L        FV R GG+EF       + +     A 
Sbjct: 247 GFKPVNDTFGHNAGDALLREIAHTLSSSISVAGFVARCGGDEFVVVLRDGNARFVEETAE 306

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
            +RK I  S++    G    I  S GIA     +  +++++  AD+A+Y AK++GR R+ 
Sbjct: 307 SIRKRI--SRLYDFDGGCAEIGASIGIASGTAGQSNLASLVREADEAMYDAKRAGRGRIA 364

Query: 257 CFSD 260
            +++
Sbjct: 365 GYAN 368


>gi|89900318|ref|YP_522789.1| PAS/PAC sensor-containing diguanylate cyclase [Rhodoferax
           ferrireducens T118]
 gi|89345055|gb|ABD69258.1| diguanylate cyclase with PAS/PAC sensor [Rhodoferax ferrireducens
           T118]
          Length = 504

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 12/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S    L     ++  L+  D L+ L N       L           + L++ F D+D FK
Sbjct: 323 SDNTALKAHQQQLQHLAHFDALTDLPNRLLLADRLHQGMVQVQRRGQMLALAFVDLDGFK 382

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDL 199
            IND+ GH  GD ++  ++ ++         + RLGG+EF A     +++ A   + + L
Sbjct: 383 LINDSHGHEAGDHLLMTVATRMKQALREGDTLARLGGDEFVAVMFDLADEAACKPMLHRL 442

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
              I   Q     G ++ ++ S G+      +      ++ +ADQA+Y AK +G+NR   
Sbjct: 443 LAAIA--QPAQFGGHTLQVSGSLGVTFYPQVQELDADQLLRQADQAMYQAKLAGKNRYRF 500

Query: 258 F 258
           F
Sbjct: 501 F 501


>gi|56476210|ref|YP_157799.1| phospholipase A2 [Aromatoleum aromaticum EbN1]
 gi|56312253|emb|CAI06898.1| predicted phospholipase A2 [Aromatoleum aromaticum EbN1]
          Length = 1043

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 82/184 (44%), Gaps = 10/184 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
             L     +   I +LS  D L+GL N S F   L           E LS+++ DID+F+
Sbjct: 595 RDLSRRDEAQEHIRRLSHFDTLTGLPNSSLFADLLRQAIGNAQRSGESLSVMYIDIDHFQ 654

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH +GD+++  ++ +          + RLGG+EF      +  + AA +A  L 
Sbjct: 655 HINDTLGHRIGDRLLVEIAGRFRNALCAENTLARLGGDEFLILLPHAQVECAAHVAEKL- 713

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I+  +   +     + +T S GIA      E   T++ RAD A   AK  GRN    F+
Sbjct: 714 -IVAAADPMLIEDHEMLVTPSIGIAMYPADGEDFETLLQRADTATNRAKSDGRNTYRFFA 772

Query: 260 DIEN 263
               
Sbjct: 773 PEMQ 776


>gi|114319920|ref|YP_741603.1| diguanylate cyclase with PAS/PAC sensor [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226314|gb|ABI56113.1| diguanylate cyclase with PAS/PAC sensor [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 718

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 84/173 (48%), Gaps = 11/173 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           + E   +  RI  L+  D L+GL N       L           ++++++F D+D+FK +
Sbjct: 540 ITERKQAEERIRHLALHDNLTGLANRRLLQDRLHQAIELARRQQQRVALLFVDLDHFKPV 599

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRK 201
           ND  GH  GD+V+  ++ +L  +      V RLGG+EF       ++ ++A  +A+ +  
Sbjct: 600 NDRHGHAFGDQVLCEMARRLERLVRGSDTVARLGGDEFVLLLQHITTARDAEAVAHKV-- 657

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           +   SQ  +  G    ++ S GI+    H     T++  ADQ++YV K+  R 
Sbjct: 658 VATASQPVVVDGIECRLSASVGISLYPDHGTEPDTLLRLADQSMYVVKQGERG 710


>gi|325272364|ref|ZP_08138762.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas sp. TJI-51]
 gi|324102489|gb|EGB99937.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas sp. TJI-51]
          Length = 328

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 9/178 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139
              + E       + +L+ ID L+   N   F         S       L+ +  DID F
Sbjct: 150 AEDITEKKQLEGELQRLATIDVLTQSSNRRHFFECAQAAFDSARENGTPLAFLLLDIDDF 209

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQIND++GH  GD+V+  ++D    V       GR+GGEEFAA   G S + A  +A  L
Sbjct: 210 KQINDSYGHQEGDQVLQHIADSGKAVLRRGDLFGRIGGEEFAAVFPGCSAELAGQIAERL 269

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
           ++ I+    +  +  +  +T+S G+     ++  + ++  RAD A+Y AK+ G+N++V
Sbjct: 270 QRQIQRLSFSHGA-HTYGVTVSQGLTGLTAEDVALDSLYARADAAMYQAKRQGKNQIV 326


>gi|254282690|ref|ZP_04957658.1| diguanylate cyclase [gamma proteobacterium NOR51-B]
 gi|219678893|gb|EED35242.1| diguanylate cyclase [gamma proteobacterium NOR51-B]
          Length = 378

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 100/233 (42%), Gaps = 11/233 (4%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE 92
           + F + IA    +  +  + +GL     L +I   N  ++ +SI  +L+  ++    L  
Sbjct: 130 LLFPMMIALAGLLPTMLAWLMGLGILASLMWIRQPNSDVMELSIMATLVATWVLSLGLMR 189

Query: 93  LFISY-NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           L     + ++ L+  D L+G LN           I+    Y+   ++V  DID+FK IND
Sbjct: 190 LIAQQTDELADLALTDPLTGALNRRYLKPQTERNIADYRRYSRLSTLVMIDIDHFKAIND 249

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+ +  L   +         + RLGGEEF      +    A  +A +LR  I 
Sbjct: 250 TLGHSEGDRALQNLVTLVEKRIRGVDMLYRLGGEEFVIMLAETGTSSATRVAEELRVRIS 309

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                 S  PS   T+S G+ +          + + D+ALY AK  GRN V  
Sbjct: 310 EMS---SDEPSKRFTVSMGVCDVTVATSAEDWLRQLDEALYRAKDRGRNCVEV 359


>gi|16124346|ref|NP_418910.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15]
 gi|221233028|ref|YP_002515464.1| MHYT/PAS-family GGDEF/EAL protein [Caulobacter crescentus NA1000]
 gi|48474944|sp|Q9ABX9|Y091_CAUCR RecName: Full=Uncharacterized signaling protein CC_0091
 gi|13421194|gb|AAK22078.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15]
 gi|220962200|gb|ACL93556.1| MHYT/PAS-family GGDEF/EAL protein [Caulobacter crescentus NA1000]
          Length = 809

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 12/194 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFF 134
           L  ++   L+E   +  +I  L+  D L+GLLN ++        I  + +  E L+++  
Sbjct: 350 LTVLAVRDLRERRAAEEKIRYLAEHDGLTGLLNRNSLQMRLAAAIDRVEASGESLAVICI 409

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL--GSSEQEA 192
           D+D+FK+ ND  GH  GD ++   + +L      P F  RLGG+EF    +  G     A
Sbjct: 410 DLDHFKEANDQHGHLAGDALLVETARRLQSAVQAPSFAARLGGDEFIVVQIAGGDQPAVA 469

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSG 251
           A LA  L +++         G  + +  S G++           ++  AD ALY AK+SG
Sbjct: 470 AELAGRLIEMLAAPVPF--DGQELAMGSSLGVSLYPDDGRTAEALMANADMALYRAKESG 527

Query: 252 RNRVVCFSDIENNT 265
           R     F    ++T
Sbjct: 528 RGVYRFFKREMDDT 541


>gi|158316394|ref|YP_001508902.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EAN1pec]
 gi|158111799|gb|ABW13996.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EAN1pec]
          Length = 585

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 10/181 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           E F         +R D L+GL N +AF+  L            +  ++F D+D FK++ND
Sbjct: 390 ERFRIERDAQYQARHDGLTGLPNRTAFLDHLQRTLTRAGHDRRRTGLLFIDLDNFKKVND 449

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKII 203
           ++GH  GD ++  ++ +L         V RL G+EFA       +  +   +A  +   +
Sbjct: 450 SYGHQTGDDLLREVAARLQRAVRPEDSVARLSGDEFAVLCDRDPALPDVQAIARRIVTTL 509

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              +I + +G  I +  S GIA    +       +  AD A+Y AK+ G  R + F +  
Sbjct: 510 ATPRI-VLAGQPITVAASIGIAHSDGQPIDADEFLCTADMAMYAAKRQGPGRFLVFDESM 568

Query: 263 N 263
            
Sbjct: 569 R 569


>gi|319778117|ref|YP_004134547.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171836|gb|ADV15373.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 737

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 63/217 (29%), Positives = 101/217 (46%), Gaps = 14/217 (6%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
            + L   LV    LV+  I ++L    +    L+ L  + N I  L+  D L+GL +   
Sbjct: 267 LFQLVPTLVAVFGLVLGGIIVAL--AALRRRTLR-LIETENHIYHLAHYDLLTGLHSRGH 323

Query: 118 FISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           F S L        +  E+L+I++ D+D FKQ+ND+FGHP GD+++   +D+L  +     
Sbjct: 324 FNSRLADALTLLPATGEQLAILYLDLDRFKQVNDSFGHPAGDELLREFADRLRRLTLEVD 383

Query: 171 FVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC- 228
            V RLGG+EF       + E E   L   L +     +    +G  + + +S G+A    
Sbjct: 384 TVARLGGDEFIIIQRAVAGENEVKTLCEHLIE--SARRPFEVAGVQVFVGVSVGVALAPR 441

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                  ++ +AD ALY AK  GR+    F    + T
Sbjct: 442 DGVDQVELVRKADLALYHAKAGGRSGYALFEPEMDQT 478


>gi|310822354|ref|YP_003954712.1| hypothetical protein STAUR_5113 [Stigmatella aurantiaca DW4/3-1]
 gi|309395426|gb|ADO72885.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 656

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 11/193 (5%)

Query: 81  LLGYISGSILKELFIS--YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
           LL  ++      +  +  +    QL+  D L+G+ N           ++    Y   LSI
Sbjct: 433 LLTAVADQAATAVKNARLHEETVQLTMTDPLTGVPNRRHLFTRMEQELARAERYQTPLSI 492

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  D+DYFK++ND  GH  GD+ +  + D L         + R GGEEF      +S+ +
Sbjct: 493 LMVDVDYFKRLNDAAGHRAGDETLRKVCDVLRTRVRKVDTLARYGGEEFMILLPQTSKAD 552

Query: 192 AAILANDLRKIIENSQ-INISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKK 249
           A  +   LR+ + ++  +  SS P+ H+TIS G+A           ++  +D ALY +K+
Sbjct: 553 ALEVGEKLRRAVADAPSLTSSSQPTGHVTISIGVACYPVDATHQDMLMDCSDSALYASKR 612

Query: 250 SGRNRVVCFSDIE 262
            GRN+V  +    
Sbjct: 613 GGRNKVTAYEPGM 625


>gi|302871692|ref|YP_003840328.1| diguanylate cyclase with GAF sensor [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574551|gb|ADL42342.1| diguanylate cyclase with GAF sensor [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 557

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 9/185 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFFDIDYFKQ 141
           SI  E    Y ++  ++ +D L+G  N       L    +       +SI  FD+D FK+
Sbjct: 373 SIALENSSLYQQMRSMAMVDGLTGAFNRIYLYEFLEKEIQTSGRRYPISIALFDVDNFKK 432

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH  GDKV+  +             V R GGEEF          EA  +   +R+
Sbjct: 433 LNDTYGHLFGDKVLQTVVRIAREKVRKGDIVARYGGEEFIIVFNHLESNEAYKVVERIRR 492

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS- 259
            IE+  I   +     +T+S GIA    H + +  +I  AD A+Y AK SG+N  V ++ 
Sbjct: 493 AIESETIE-DNLIQTRVTVSFGIASYPLHADNVKDLIKCADVAMYRAKSSGKNCTVIYNQ 551

Query: 260 DIENN 264
           ++E  
Sbjct: 552 ELEMK 556


>gi|326319540|ref|YP_004237212.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323376376|gb|ADX48645.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 402

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 104/229 (45%), Gaps = 12/229 (5%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
            I++   + +        G  P  GL        +  + +        +    + ++   
Sbjct: 154 GIWLQAAVLVVRALAAITGHMPASGLLAANFWQHATFLATFVTVQASSFGFIFMARDRAD 213

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148
           + N   +++  D L+ + N  A I++L           E LS++  DID+FK+IND  GH
Sbjct: 214 AAN--ERMAARDPLTDVPNRRATIAALDRCVAQAVRSGEPLSVMMLDIDHFKRINDGLGH 271

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+V+  + D L     +   +GR GGEEF      +    A +LA +LR  +E +  
Sbjct: 272 LAGDQVLCGVVDVLGERLRSQDLIGRYGGEEFLVLLPRTPLAGALVLAGELRAAVEQAHF 331

Query: 209 NISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               G ++ +T+S G+A       +    ++  AD+A+Y AK++GRN+V
Sbjct: 332 EFV-GRTVPVTLSIGVAGGVLEPGDRWDGLVAAADEAMYRAKRAGRNQV 379


>gi|258620323|ref|ZP_05715361.1| PAS domain S-box/GGDEF domain protein [Vibrio mimicus VM573]
 gi|258587202|gb|EEW11913.1| PAS domain S-box/GGDEF domain protein [Vibrio mimicus VM573]
          Length = 684

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+GL N   F   L    +    L +++ DID FK IND+ GH +GDKVI  ++ 
Sbjct: 256 AHIDSLTGLYNRHGFTKRLEQCIQNETPLVLLYLDIDNFKNINDSLGHHIGDKVIKEVAA 315

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHIT 219
           +L  +      +G LGG+EF            A +LA+ +  +I  +Q       S  + 
Sbjct: 316 RLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLI--NQPFDLHHFSKRLA 373

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +           ++  AD A+Y AK+ GRNR++ F+D  N   
Sbjct: 374 CSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEA 421


>gi|238758370|ref|ZP_04619548.1| hypothetical protein yaldo0001_2590 [Yersinia aldovae ATCC 35236]
 gi|238703493|gb|EEP96032.1| hypothetical protein yaldo0001_2590 [Yersinia aldovae ATCC 35236]
          Length = 534

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 8/161 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++   ++ D ++GL N     ++L       +  S +  DID+FK IND++GH VGD+VI
Sbjct: 375 KLKFEAQTDPMTGLYNRRGLATTLEPISQLGQHFSAIALDIDHFKMINDSYGHDVGDEVI 434

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L+ Q+         + R GGEEF     G S   A  +A+ LR  +E   I       
Sbjct: 435 KQLALQIRDSSRDTDILCRSGGEEFLMLLPGISRDVAGQVASRLRHNVETMVIADVR--- 491

Query: 216 IHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             ITIS G+A            + +AD+ALY AK+ GRNRV
Sbjct: 492 -PITISLGVAHWDGENGSPEDALKQADEALYRAKQQGRNRV 531


>gi|218679410|ref|ZP_03527307.1| hypothetical protein RetlC8_11216 [Rhizobium etli CIAT 894]
          Length = 238

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 81/176 (46%), Gaps = 9/176 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            + Q +  D L+  +   AF             +   LS + FDID+FK++ND  GH  G
Sbjct: 5   ELMQSAATDSLTEAMTRRAFKQEADQLISLALRHQHDLSCIVFDIDHFKRVNDTHGHAAG 64

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++             GR+GGEEFA        + A  +A  LR  I +  I   
Sbjct: 65  DEVLKAVAAICKTTLRVGDLFGRIGGEEFAVVLPHVDREGAVAVAEKLRAAIASQPIRGD 124

Query: 212 SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            G  +H+T S G +      + I T++ +AD A+Y AK  GRNR V +S I  +  
Sbjct: 125 HGV-LHVTASLGSSTLSIVSKEIETLLAQADAAMYQAKHGGRNRCVSWSSIHADHA 179


>gi|218437977|ref|YP_002376306.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7424]
 gi|218170705|gb|ACK69438.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7424]
          Length = 353

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 84/182 (46%), Gaps = 14/182 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           EL     ++ +L+ +D L+ + N   F          L      LS++  DIDYFK  ND
Sbjct: 170 ELQALNEKLQKLATLDGLTQIANRLQFDQHLETEWKRLQREKLPLSLLLGDIDYFKYYND 229

Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD+ +  ++  +   V+     V R GGEEFA     +  Q A  +A  +   I
Sbjct: 230 YYGHLAGDECLRSVAQAINNSVWRPGDLVARYGGEEFAVILPNTDAQGATAVAQRILAEI 289

Query: 204 ENSQI-NISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVV---C 257
               + +I S  S +IT+S GIA            ++  AD ALY AK  GRNR+    C
Sbjct: 290 NALHLPHIRSEVSNYITLSLGIACIIPCSNFCCKDLVKAADHALYQAKAQGRNRIYLLNC 349

Query: 258 FS 259
           FS
Sbjct: 350 FS 351


>gi|152996275|ref|YP_001341110.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150837199|gb|ABR71175.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 545

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 75/251 (29%), Positives = 116/251 (46%), Gaps = 19/251 (7%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLT-PFYGLEYILVENLSLVIISITIS 79
           +  P T ++   I  ++ +A  +F+  I+LF   ++ P   L        S  +     S
Sbjct: 299 TLVPLTGIMEKVILRTLPMALAVFL-FIWLFARAISRPLQQLADKARSLDSPTVNEDIES 357

Query: 80  LLLGYISGSILKELFIS-----YNRISQL---SRIDCLSGLLNHSAF---ISSLGSYNEK 128
           +   Y+    LK+  +S     +N+I +L   +  D L+G  N  AF   +  L      
Sbjct: 358 IDSWYVESLGLKKAMLSGVKLIHNQIGELKRDAETDPLTGANNRRAFEFKLKQLALLEVP 417

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            S++  DIDYFK+INDN+GH VGD V+   +  L         V R GGEEF      +S
Sbjct: 418 FSVLALDIDYFKRINDNYGHSVGDDVLKQQTQILNRFCRDGDMVTRTGGEEFILLLKETS 477

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYV 246
            ++A ++A  LR  I     ++      +IT+S GIA         I   +  AD+ALY 
Sbjct: 478 IEDAFLVAERLRIAISEETFDVVG----NITVSIGIAAWAISDGISIEKTLSLADKALYQ 533

Query: 247 AKKSGRNRVVC 257
           AK+ GRNR + 
Sbjct: 534 AKEQGRNRCII 544


>gi|156743079|ref|YP_001433208.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Roseiflexus
           castenholzii DSM 13941]
 gi|156234407|gb|ABU59190.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Roseiflexus castenholzii DSM 13941]
          Length = 919

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 57/232 (24%), Positives = 98/232 (42%), Gaps = 13/232 (5%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQL 103
            IA+  L Y  L       ++L   +++   S   + ++G  S + + +   +  R+   
Sbjct: 433 LIASFELEYRILHRDGAYRWMLCRGIAVWDASGRATRMVG--SQTDITDRKRAEERLEYG 490

Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
              D L+GL N + F+  L              +++F D+D FK IND+ GH  GD+++ 
Sbjct: 491 ILHDTLTGLPNRTLFMDRLSLALRRSQRERSLFAVLFLDLDRFKTINDSLGHAAGDELLV 550

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPS 215
            ++ +L  V      V RLGG+EFA         ++A  +A  +++ +         G +
Sbjct: 551 VVARRLEGVLRPGDTVARLGGDEFAVMLDRLDAPEDAEWIAERIQQALRA--PLTIGGRT 608

Query: 216 IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           ++ T S G+       E    I   AD A+Y AK   R R V F        
Sbjct: 609 VYTTASIGLVLSNQGYERAEEIARDADTAMYQAKMGQRARYVVFDPDMRRKA 660


>gi|115380215|ref|ZP_01467239.1| ggdef domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115362782|gb|EAU61993.1| ggdef domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 642

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 11/193 (5%)

Query: 81  LLGYISGSILKELFIS--YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
           LL  ++      +  +  +    QL+  D L+G+ N           ++    Y   LSI
Sbjct: 419 LLTAVADQAATAVKNARLHEETVQLTMTDPLTGVPNRRHLFTRMEQELARAERYQTPLSI 478

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  D+DYFK++ND  GH  GD+ +  + D L         + R GGEEF      +S+ +
Sbjct: 479 LMVDVDYFKRLNDAAGHRAGDETLRKVCDVLRTRVRKVDTLARYGGEEFMILLPQTSKAD 538

Query: 192 AAILANDLRKIIENSQ-INISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKK 249
           A  +   LR+ + ++  +  SS P+ H+TIS G+A           ++  +D ALY +K+
Sbjct: 539 ALEVGEKLRRAVADAPSLTSSSQPTGHVTISIGVACYPVDATHQDMLMDCSDSALYASKR 598

Query: 250 SGRNRVVCFSDIE 262
            GRN+V  +    
Sbjct: 599 GGRNKVTAYEPGM 611


>gi|114561616|ref|YP_749129.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           frigidimarina NCIMB 400]
 gi|114332909|gb|ABI70291.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           frigidimarina NCIMB 400]
          Length = 874

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 90/193 (46%), Gaps = 16/193 (8%)

Query: 82  LGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSAFISSLGSYNE--------KLS 130
           L  ++ ++ +E+       N++   ++ D L+GL N S  +  L    +        + +
Sbjct: 424 LAELNNNLQQEINQRRKIENQLLHDAQHDGLTGLPNRSYLMERLSQALKHLRRHGLDQFA 483

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE- 189
           ++F D+D FK IND+FGH  GD+ +   + ++         + R+GG+EF       +  
Sbjct: 484 LLFIDLDRFKVINDSFGHLEGDRFLIETAQRIKSCVRENDTLARMGGDEFVILLDSINAT 543

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVA 247
           ++A  +++ + + + +    ++    I    S GIA     +     +++  AD A+Y A
Sbjct: 544 EDAIEVSDRILQAL-SMPYQLAKQEFIS-GASIGIAFSGRNKLVTSESLLRDADAAMYQA 601

Query: 248 KKSGRNRVVCFSD 260
           K +G+   V F D
Sbjct: 602 KANGKGCYVIFDD 614


>gi|327398859|ref|YP_004339728.1| diguanylate cyclase [Hippea maritima DSM 10411]
 gi|327181488|gb|AEA33669.1| diguanylate cyclase [Hippea maritima DSM 10411]
          Length = 481

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 9/175 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           +   ++EL     +  +   ID L+G+ N           I+    Y + +SI+  D+D+
Sbjct: 301 AKKTIEELKEKLKKAEENLIIDPLTGVYNRRGLLHFLKIEIARAKRYKQPMSIIMADLDH 360

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           F ++N+ +GH  GD V+      +  +        R GGEEF      +    A  +A  
Sbjct: 361 FSRVNNTYGHLAGDIVLKGFCKTVKSLIRATDIAARYGGEEFIIILPNTDIDSAYEVAEK 420

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +R  I   +       +  IT S G+++    E I  +I RAD ALY AK+  RN
Sbjct: 421 IRNAISKLKFKYKD-ETFSITSSFGVSQYKDDETIEKLIKRADAALYKAKEK-RN 473


>gi|315499758|ref|YP_004088561.1| diguanylate cyclase [Asticcacaulis excentricus CB 48]
 gi|315417770|gb|ADU14410.1| diguanylate cyclase [Asticcacaulis excentricus CB 48]
          Length = 352

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 89/179 (49%), Gaps = 7/179 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           S   +  L    +++   +  D L+ L N  +F  +L  +      + +++   DID+FK
Sbjct: 163 SSREVARLRKHLDQVRLEAMTDALTNLANRKSFDEALERHCDSDEGKNITLAVLDIDHFK 222

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           + ND +GH  GD+V+ +++  L  +   P    R GGEEFA      +      L N+ R
Sbjct: 223 RFNDTWGHQTGDQVLRYVASVLSRIGRAPRMAARYGGEEFAMIFPSENMAVVERLLNEAR 282

Query: 201 KIIENSQINISSGPS--IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + I +  +   S       ITIS GIAER + E    ++ RAD+ALY +K +GRN V C
Sbjct: 283 QEIASRVLKRRSTNEDLGTITISVGIAERDYGEDAYDLLDRADKALYQSKNNGRNMVTC 341


>gi|77360630|ref|YP_340205.1| hypothetical protein PSHAa1689 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875541|emb|CAI86762.1| conserved protein of unknown function [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 423

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 10/184 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDI 136
            +  +   E   ++  +S+++ +D L+ + N   F          +   N +LS++  DI
Sbjct: 236 LVVFNDATERIKAHEILSEMAFLDSLTKIANRRRFDEKIVDEFSRVKLANCQLSLIIIDI 295

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           D FK+ ND  GH  GDK +  ++ +L   V     FV R GGEEF      + +Q A  +
Sbjct: 296 DNFKKFNDRHGHIAGDKCLYAVAQKLADTVSRPEDFVARYGGEEFVVLLPQTDKQGALFV 355

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI--IYRADQALYVAKKSGRN 253
           A  ++K IE   I      + ++++S GI    H +    +  I  AD ALY AK  GRN
Sbjct: 356 AEQIQKAIEMLAIVHEDSFTGYLSVSMGINTVNHHQCDDHLTFIQAADDALYYAKNQGRN 415

Query: 254 RVVC 257
            +  
Sbjct: 416 CIAL 419


>gi|326316728|ref|YP_004234400.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323373564|gb|ADX45833.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 326

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 81/176 (46%), Gaps = 10/176 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           E      RI QLS  D L+G+ N   F   L           E L +V  DID+FK  ND
Sbjct: 148 ERQALNERIYQLSITDSLTGIANRRRFDEMLGSEFARHARSGEPLCVVLIDIDHFKAFND 207

Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           ++GHP GD  +  ++  +   +        R GGEEFA     +   EA+ +   LR+ I
Sbjct: 208 HYGHPGGDSCLQRVAAAIDTRMRWPCDLAARYGGEEFACILPATGLDEASDMTEGLRRAI 267

Query: 204 ENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
           E   I  ++  S  +T S G A   H  ++    ++  AD +LY AK+ GRNR   
Sbjct: 268 EALAIPHAAAASGRVTASVGAACCLHAAQQTPDGLLEAADASLYRAKREGRNRTAV 323


>gi|257095380|ref|YP_003169021.1| periplasmic/7TM domain sensor diguanylate cyclase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047904|gb|ACV37092.1| periplasmic/7TM domain sensor diguanylate cyclase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 649

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           + L  S   + +L+  D L+GL N S     L           E  +++  D+D FK +N
Sbjct: 469 ERLRQSEAELRKLAHHDPLTGLANRSLLYDELRRSIARGKRGGETFAVLMIDLDGFKPVN 528

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKI 202
           D +GH VGD+++  ++ +L         V RLGG+EF     G   + +A  +   +  +
Sbjct: 529 DTYGHAVGDRLLEVIAPRLQECVRVSDVVARLGGDEFVVVVEGVLDQHQALAIGAKIIAV 588

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
           +  SQ        I +  S G+A      +    ++  AD+A+Y+AK++GR   
Sbjct: 589 L--SQPLHIGAHDIQVGASVGVALWPQDGDDTQHLLQSADRAMYLAKQAGRGCC 640


>gi|254784921|ref|YP_003072349.1| response regulator receiver domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237685780|gb|ACR13044.1| response regulator receiver domain protein [Teredinibacter turnerae
           T7901]
          Length = 300

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 103/227 (45%), Gaps = 11/227 (4%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
           I  V+  AN     I      G    + + +   ++S  +   L  ++    + L  +  
Sbjct: 76  IPVVMVSANTGDNSIVRALDMGAHDFVCKPIEYPVLSARMRSALRLVNAR--RALVRANE 133

Query: 99  RISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            + +L+  D L+ + N   F        S    +  +LS++ FD+D FK +ND +GH  G
Sbjct: 134 ELERLATQDTLTDVYNRRHFFTLAEAEFSKARRHGRQLSVLMFDVDLFKAVNDTYGHAAG 193

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+ +  +++    V      +GRLGGEEFA     +    A  LA  +R   E +Q+N+ 
Sbjct: 194 DQALRTITECCRHVVRDSDILGRLGGEEFALCCPDADLDGAFHLAERIRTNCELAQVNLD 253

Query: 212 SGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
              +  IT+S G+ +   K+     ++ RAD  L+ AK  GRNR V 
Sbjct: 254 D-AAFGITLSIGVTQMNEKDAHFDHLLQRADTLLFQAKALGRNRSVA 299


>gi|239908167|ref|YP_002954908.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239798033|dbj|BAH77022.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 420

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 11/177 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
           +  + L  + + +++L+  D L+G  N   F             Y E LS+V FDID+FK
Sbjct: 228 ADRERLQGANDALAELAVTDQLTGAYNRLKFNEVMHTQVARSARYGEALSVVMFDIDHFK 287

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GH  GD ++  L+ +++       ++ R GGEEF  AA  ++   AA+LA  LR
Sbjct: 288 VVNDTYGHGAGDDMLRELARRVIEATRGVDWLFRYGGEEFVVAAPHTALGNAALLAEKLR 347

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I+            I  +IS G+AE    E +  ++ R D ALY AK +GRNRV  
Sbjct: 348 LIVAGKPFP----HGIAGSISLGVAELKPGESVEELMARVDAALYTAKNAGRNRVAV 400


>gi|268679208|ref|YP_003303639.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617239|gb|ACZ11604.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 586

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 86/192 (44%), Gaps = 12/192 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           I G  + E   + + I  L+  D L+ L N       +         +++  +++  D+D
Sbjct: 138 ILGKDISERRHAESTIHTLAFFDPLTHLANRQLLHDRMAQALAKSQRHHKVGALLMIDLD 197

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE--AAIL 195
            FK +ND  GH +GD+++  ++ ++  +      + R+ G+EF     G + +E  AA  
Sbjct: 198 NFKALNDTKGHHIGDELLIQVAQRIQTIVREGDTLARISGDEFVVLLEGLAHEESKAAQE 257

Query: 196 ANDLRKIIE--NSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGR 252
           A      ++   ++     G     + S GIA      +   T++ +AD A+Y AK+ GR
Sbjct: 258 AEKFATRVKYLLNEPYELLGYEHTCSSSIGIALFNGQPKSKETLLKQADIAMYQAKEKGR 317

Query: 253 NRVVCFSDIENN 264
           NR+  +  +   
Sbjct: 318 NRICFYDPLMQE 329


>gi|85859612|ref|YP_461814.1| response regulator [Syntrophus aciditrophicus SB]
 gi|85722703|gb|ABC77646.1| response regulator protein with GGDEF domain [Syntrophus
           aciditrophicus SB]
          Length = 355

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 68/267 (25%), Positives = 120/267 (44%), Gaps = 20/267 (7%)

Query: 5   LKDFLSIWLCHEKNLES--FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLE 62
           +  F++  L H   LES   + +  +I  S      + T++ +A I   +I    F G  
Sbjct: 90  MTGFVTWALWHTGKLESPLLNSYLLVIITSALALGKLTTLLELALIGTCFI----FLGSH 145

Query: 63  YILVENLSLVIISITIS-----LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
             + E  SL  +    +     +L+ YI+     ++    N+I  +S  D L+G+ N   
Sbjct: 146 SSINELFSLKYVGALFARFAPFVLVAYITTMFASDIRYGLNKIKLMSETDELTGIYNRRG 205

Query: 118 FI---SSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
                  L      YN  LS++  D D  K++ND++GH  GD+++  L + +        
Sbjct: 206 LAIIADRLFGHTVRYNRPLSLLAIDSDNMKRVNDDYGHKAGDQLLVTLVNTIQAQLRHSD 265

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-H 229
            + R GG+EF      +    A  +A  +RK +EN+ + +  G  +  T+S G+A     
Sbjct: 266 ILARQGGDEFVVLLPETPSTGALDVAERIRKAVENTPL-VLDGKIVRTTVSIGVASYPSE 324

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV 256
              +  ++ +AD  +Y AK  GRN+VV
Sbjct: 325 GHSLDVLLAQADFKMYEAKLGGRNKVV 351


>gi|34497042|ref|NP_901257.1| sensory box/GGDEF family protein [Chromobacterium violaceum ATCC
           12472]
 gi|34330325|gb|AAQ59263.2| probable sensory box/GGDEF family protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 347

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 94/192 (48%), Gaps = 14/192 (7%)

Query: 80  LLLGYISGSIL--KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLS 130
           + L  ISG  L  ++L  S  ++++++  D L+ L N           IS    Y + ++
Sbjct: 159 IALYDISGRKLLEQQLHESNQQLAEMAVTDPLTRLYNRRHADMVLRDEISRCERYGQTMA 218

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           I  FDID+FK+ ND +GH  GD V+  +++ L           R+GGEEF      +  +
Sbjct: 219 IAVFDIDHFKRFNDQYGHQAGDDVLVAVANALRDTTRNTDINARIGGEEFMVIFPYTRLR 278

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +A  + + L+  + ++           IT S G+ +    +  + ++ RAD+ LY AK++
Sbjct: 279 DAHKVMSRLQMALTHTTFPFVEQ---RITFSGGVTDWRPGDSPALMMSRADKLLYDAKQA 335

Query: 251 GRNRVVCFSDIE 262
           GRN  V  SD E
Sbjct: 336 GRN--VVLSDQE 345


>gi|296187655|ref|ZP_06856049.1| diguanylate cyclase (GGDEF) domain protein [Clostridium
            carboxidivorans P7]
 gi|296047612|gb|EFG87052.1| diguanylate cyclase (GGDEF) domain protein [Clostridium
            carboxidivorans P7]
          Length = 1166

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 11/175 (6%)

Query: 92   ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144
            E   +   + +++  D L+GL N   F S L +  +        L+I+F D+D FK IND
Sbjct: 993  ERKKAEKLLEEMANHDNLTGLPNRKLFYSELKNSLQLAKENKFSLAILFIDLDGFKMIND 1052

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
              GH  GD V+  +S +L+        V R GG+EF        +     + +  + II 
Sbjct: 1053 TLGHSSGDIVLKIVSQRLLKTVREGDMVSRFGGDEFIIFMTNVHQNN--TIRDVCKNIIN 1110

Query: 205  NSQINISSGPSI-HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
                 I  G +  ++++S G++    H + I  +I +AD A+Y AK SG+N+V+ 
Sbjct: 1111 EISKKIVLGENYGYVSVSIGVSIFPDHGDNIEELIKKADAAMYRAKNSGKNKVIF 1165


>gi|254434207|ref|ZP_05047715.1| response regulator receiver domain protein [Nitrosococcus oceani
            AFC27]
 gi|207090540|gb|EDZ67811.1| response regulator receiver domain protein [Nitrosococcus oceani
            AFC27]
          Length = 1240

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 12/181 (6%)

Query: 95   ISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFG 147
             +   I QL+  D L+ L N + F   LG          E+ +++F D+D FK +ND  G
Sbjct: 1045 RAEKDIHQLAYHDVLTSLPNRTLFHKQLGELMNRSHLRGEQFAVLFLDLDRFKLVNDTLG 1104

Query: 148  HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENS 206
            H VGD ++   +D++V    +   V RLGG+EF        S + AA +A  +  ++  S
Sbjct: 1105 HEVGDLLLKAAADRIVGCLRSNDMVARLGGDEFTVILEKIESPRVAAEVAAKICSVL--S 1162

Query: 207  QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            ++   SG  ++I+ S GI+      E +ST++  AD A++ AK+ G N    +       
Sbjct: 1163 KVFAFSGQEMYISTSIGISLYPGDGEDVSTLVKHADTAMFRAKEQG-NSYQFYEKGMETA 1221

Query: 266  C 266
             
Sbjct: 1222 A 1222


>gi|190890170|ref|YP_001976712.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190695449|gb|ACE89534.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 392

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 116/247 (46%), Gaps = 14/247 (5%)

Query: 12  WLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL 71
           WL   +     +P   +   +++ +  I+ V+  A   L   G            E+LSL
Sbjct: 139 WLARAE-----APAPILGIAALYTATAISFVLCAA--VLIADGKLVLGAAPSNWAEDLSL 191

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKL 129
            +  I     +G +S ++ +    + +R+   +  D L+GLLN  A     G+       
Sbjct: 192 AV-CIAGMTGIGALSLALHQWRLAARHRLE--AITDPLTGLLNRRAVFDQHGTRPMGTTT 248

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +I+ FDID+FK +ND FGH  GD+VI   +++L           RLGGEEFA        
Sbjct: 249 AIIVFDIDHFKSVNDRFGHAAGDRVITVFAEELRANCSAGDTAARLGGEEFALVLKEIMP 308

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAK 248
             A + A  +R+  E  +I+I  G  +  T+S G+A  R       T++  AD+ALY AK
Sbjct: 309 GRAELTAERIRRAFEAREIDI-DGQMLKCTVSVGVAPGRSQMPDFDTMLSAADKALYAAK 367

Query: 249 KSGRNRV 255
           + GRNRV
Sbjct: 368 RGGRNRV 374


>gi|329910341|ref|ZP_08275285.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327546203|gb|EGF31245.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 439

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 96/185 (51%), Gaps = 12/185 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           S  +E+  +Y R +     D L+GL N  AF       +  +      LS++ FD D+FK
Sbjct: 254 SDKREVSENYRRATA---CDHLTGLANRHAFFDAAAIELERMRRVPRSLSLILFDADFFK 310

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GHP GD V+  L+  +   F     V R+GGEEFA     ++ + A ++A  LR
Sbjct: 311 SINDRYGHPAGDVVLRELATAMKKTFRQIDMVARVGGEEFAILLPSTNLEGAMLVAERLR 370

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +  + + I  G  I  T+S G+A        +  ++ RADQALY AK SGRNR+V + 
Sbjct: 371 EAVAATVLQI-DGTKIKFTVSGGVATMHESVLGLDALMKRADQALYAAKTSGRNRIVSWH 429

Query: 260 DIENN 264
              ++
Sbjct: 430 PDADD 434


>gi|260426532|ref|ZP_05780511.1| response regulator PleD (Stalked cell differentiation-controlling
           protein) [Citreicella sp. SE45]
 gi|260421024|gb|EEX14275.1| response regulator PleD (Stalked cell differentiation-controlling
           protein) [Citreicella sp. SE45]
          Length = 478

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 83/183 (45%), Gaps = 18/183 (9%)

Query: 93  LFISYNRIS-------QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
              + +R+        + +  D L+GL N    +  L              +++  D+D+
Sbjct: 272 RKRTADRLRSNMRDGLRAAVTDPLTGLYNRRYVLPHLTRVADRAIEKARSYALLLLDLDH 331

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND  GH VGD V+   + ++         V R+GGEEF      +SE  A + A  
Sbjct: 332 FKTINDAHGHAVGDAVLVEAARRMSANLRPSDLVARIGGEEFLVVMPDTSENTALLAAER 391

Query: 199 LRKIIENSQINISSGPSIH--ITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNR 254
           LR +I  +   +   P     +T S G+A       EP   ++ RAD+ALYVAK SGRN+
Sbjct: 392 LRSVISKTPFTVPGLPEGGRQVTASIGVALPRRTRAEPPEILLDRADRALYVAKNSGRNQ 451

Query: 255 VVC 257
           V  
Sbjct: 452 VAL 454


>gi|251788399|ref|YP_003003120.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Dickeya zeae Ech1591]
 gi|247537020|gb|ACT05641.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dickeya zeae Ech1591]
          Length = 689

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 83/188 (44%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S + +       I + +  D ++ L N   F   L             ++++  D+D+FK
Sbjct: 240 SDITQRKKQEALIWRQANYDAVTTLPNRHHFQDKLERAVEHAKQSGRPMALMLIDLDHFK 299

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
            +ND+ GH  GD ++  +S++L         + RLGG+EFA       +  ++  LA  L
Sbjct: 300 SVNDSLGHRAGDALLLAVSNRLTDCVQGADTIARLGGDEFAIILTDLHQNGDSGCLARTL 359

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
              +   Q     G S+ ++ S GIA   +  + +  +   ADQA+Y AK +GRN    +
Sbjct: 360 LAQLA--QPFNIDGESMLVSASIGIALFPNDSDTLEELFKNADQAMYAAKSAGRNCFNYY 417

Query: 259 SDIENNTC 266
           +   +   
Sbjct: 418 TPALHQAA 425


>gi|189913164|ref|YP_001965052.1| GGDEF domain receiver component of a two- component response
           regulator [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|189913501|ref|YP_001964729.1| Putative GGDEF/response regulator receiver domain protein
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|167777840|gb|ABZ96139.1| GGDEF domain receiver component of a two- component response
           regulator [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167781569|gb|ABZ99865.1| Putative GGDEF/response regulator receiver domain protein
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 298

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 12/188 (6%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LS 130
           I LL    S   +K L   ++++ + +  D ++GL N       +    ++       LS
Sbjct: 113 IELLARIFSALRIKAL---HDQLRETAIRDVMTGLYNRRYMEERIEQEFQRCKRHDSLLS 169

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +   DID FK IND +GH +GD+VI  L+ +L   F     + R GGEEF      +   
Sbjct: 170 MAMIDIDKFKNINDTYGHEIGDQVIKQLAHELKTSFRKSDIISRFGGEEFVILFPETGVV 229

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAK 248
           +A  + + +R+ +   ++   +    H T S G+A  +    +    ++  AD+ LY AK
Sbjct: 230 DATRILDRVRENVSKLEMKSDTDQIFHFTFSGGVAGGDLSDIQSNQELLKIADKNLYEAK 289

Query: 249 KSGRNRVV 256
            SGRN+++
Sbjct: 290 SSGRNQII 297


>gi|121594444|ref|YP_986340.1| PAS/PAC and Chase sensor-containing diguanylate
           cyclase/phosphodiesterase [Acidovorax sp. JS42]
 gi|120606524|gb|ABM42264.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Acidovorax sp. JS42]
          Length = 1047

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 82/191 (42%), Gaps = 12/191 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           ++     +   +   +  L+  D L+GL N    +  L         +    +++  D+D
Sbjct: 596 VTMVDQSQRKAAEEEVRYLAYNDPLTGLPNRRLLLDRLEQALAMSARHQLCGAVMMLDLD 655

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAIL 195
            FK IN+  G  +GD+++  ++ +L         + R GG+EF      LG+  QEAA  
Sbjct: 656 NFKTINETQGPDMGDRLLREVARRLRDCVPEDETLARHGGDEFVVVLKDLGADPQEAANR 715

Query: 196 ANDLRKII--ENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGR 252
           A ++ + I           G   H  +S GIA     +E    ++ R+D A+Y AK +GR
Sbjct: 716 AEEMGQTILAAIRAPFDIDGQQHHTALSVGIAIFRGVRESADELLKRSDLAMYEAKAAGR 775

Query: 253 NRVVCFSDIEN 263
           + +  F     
Sbjct: 776 DTLRFFDPQMQ 786


>gi|51246372|ref|YP_066256.1| sensory transduction system, regulatory protein [Desulfotalea
           psychrophila LSv54]
 gi|50877409|emb|CAG37249.1| probable sensory transduction system, regulatory protein
           [Desulfotalea psychrophila LSv54]
          Length = 526

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 64/217 (29%), Positives = 108/217 (49%), Gaps = 22/217 (10%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILK---------ELFISYNRISQLSRIDCLS 110
           G    L+    ++  S+   +L   +  S+L          EL     ++  +S  D L+
Sbjct: 306 GFSSQLIFVFGIIFTSVVAFVLRAIVKKSVLTQEKLLEKKNELQEVNRKLKLVSSSDGLT 365

Query: 111 GLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           G+ N     + L     +       +S +  DID FK  NDN+GH  GD+ +  +++QL 
Sbjct: 366 GVFNRRTMDNFLSREWARAMREKSSISFIMADIDNFKLYNDNYGHLTGDECLKKVAEQLR 425

Query: 164 VV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITIS 221
            +   +   V R GGEEF+   L ++  +AA +A D R+ IE+ QI  +  P+ + +TIS
Sbjct: 426 KIPHRSTDLVARYGGEEFSLVLLNTT--DAASVAEDCRRAIEDLQIAHAFSPTSNVVTIS 483

Query: 222 AGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256
           AG++    K  + +  ++  AD+ALY AK+ GRNR+ 
Sbjct: 484 AGVSTCIPKSGMDSSLLVAAADKALYRAKRLGRNRIA 520


>gi|118579769|ref|YP_901019.1| response regulator receiver modulated diguanylate cyclase
           [Pelobacter propionicus DSM 2379]
 gi|118502479|gb|ABK98961.1| response regulator receiver modulated diguanylate cyclase
           [Pelobacter propionicus DSM 2379]
          Length = 319

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 11/175 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
           +    + +  ++ ID L+G+ N   F  SL         +   L+++  DID+FK+ ND+
Sbjct: 139 MKAQADLLRSMAFIDGLTGVANRRRFDESLEAEWRQCRRHRAPLALLMIDIDHFKKYNDS 198

Query: 146 FGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD  +  ++  L   +      V R GGEEFA    G   + A   A  +   + 
Sbjct: 199 YGHQEGDVCLRKIATLLREELGRPHDLVARYGGEEFACLLPGVDMEGAMYKAQSILTALH 258

Query: 205 NSQINISSGPSI-HITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
              I   S  +   +TIS G+A            ++  AD  LY AK+ GRNR+ 
Sbjct: 259 RQAIPHVSSETAPFVTISLGVAVTSPGPEPRHGQLVATADTQLYKAKQQGRNRIC 313


>gi|307726144|ref|YP_003909357.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Burkholderia sp. CCGE1003]
 gi|307586669|gb|ADN60066.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Burkholderia sp. CCGE1003]
          Length = 692

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 60/231 (25%), Positives = 99/231 (42%), Gaps = 19/231 (8%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
            A +   ++  +       IL   L L       S L+G +S            +I QL+
Sbjct: 208 AAGVHAGWLATSVILFTLAILSVTLLLSRFDARTSFLVGAVS--------KLNGQILQLA 259

Query: 105 RIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            +D L+GL N +     +              +++F DID FK IND+ GH  GD+V++ 
Sbjct: 260 TLDTLTGLPNRATLTERIEHAIHARRRQRSLFAVLFMDIDGFKTINDSLGHSAGDQVLSA 319

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSI 216
            + +L+        V RLGG+EF   A   +S  +A  LA D+ + +       +    +
Sbjct: 320 FAQRLLQCVRAGDTVARLGGDEFVVLAEQLASRNDAGALAEDVLERMRRD--TWADSQPL 377

Query: 217 HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            +  S GIA      + + T++  AD A+Y AK++GR+    F    N   
Sbjct: 378 QVMPSIGIALFPEDGDTVETLLKHADAAMYEAKRAGRSTYRFFERRMNEAA 428


>gi|254502205|ref|ZP_05114356.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
 gi|222438276|gb|EEE44955.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
          Length = 513

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 58/203 (28%), Positives = 90/203 (44%), Gaps = 9/203 (4%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125
           L ++   IS+++    G +   L  S  R    +  D L+GL N   F   L        
Sbjct: 298 LAVLIAAISVIVARRIGRLSSTLEQSERRNHYFAHHDSLTGLPNRHHFSDRLAYALDGLP 357

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           +   +++  D+D FK +ND  GH  GD V+   + +L  +      VGR+GG+EF    L
Sbjct: 358 DNGFAVIACDLDKFKPVNDTHGHEAGDIVLRVTASRLQDIISDKGVVGRIGGDEFVLLLL 417

Query: 186 GS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQA 243
               + E   +A+ +   +    I  +   S+ I IS GIA           +I  AD A
Sbjct: 418 HHRDQAELQAIADKILATVAK-PIKFNPEQSVSIGISLGIALAPDSGMSEKHLIRAADTA 476

Query: 244 LYVAKKSGRNRVVCFSDIENNTC 266
           LY+AK +GRN    F+  E +T 
Sbjct: 477 LYLAKDAGRNTYA-FAHTEPDTA 498


>gi|33602292|ref|NP_889852.1| signalling protein [Bordetella bronchiseptica RB50]
 gi|33576731|emb|CAE33809.1| probable signalling protein [Bordetella bronchiseptica RB50]
          Length = 691

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 11/188 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           + ++   L  +   + Q++  D L+ L N +     L              S++F D+D 
Sbjct: 245 TSALNASLAQANEELVQMALHDTLTKLPNRALLDERLKQAIIRATAAGRGFSLLFIDLDG 304

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND +GH  GD ++  ++ ++         V RLGG+EF   A      +AA LA  
Sbjct: 305 FKAINDAYGHGAGDLLLVEMAQRIKRAMRPQDCVARLGGDEFVVLADLPDPNDAAGLAER 364

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK-SGRNRVV 256
           L   +  +      G  + +  S GIA         ST++  AD A+Y AK+ S  +RV 
Sbjct: 365 LIDTL--TVPAEVQGHEVSVAASIGIALFPGDGADASTLLAHADAAMYHAKRLSQTHRVS 422

Query: 257 CFSDIENN 264
            F    N 
Sbjct: 423 FFEPSMNE 430


>gi|311279104|ref|YP_003941335.1| diguanylate cyclase [Enterobacter cloacae SCF1]
 gi|308748299|gb|ADO48051.1| diguanylate cyclase [Enterobacter cloacae SCF1]
          Length = 564

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 94/199 (47%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L ++ I  T  L+L ++    ++  +      +   +  D L+ L N             
Sbjct: 359 LGVLWILFTSMLILAWVVIHRMVNNMTALQKSLQWQAWYDGLTRLFNRGTLFERANTAMK 418

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 + ++++  D+D FK IND FGH  GD+V+A  +  +    G+    GR+GGEEF
Sbjct: 419 SCREQQKPIAVIQMDLDCFKSINDRFGHQAGDRVLAHTAGLISSRIGSADLAGRVGGEEF 478

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIY 238
                G++++ A + A  +R+ I + ++ +  G  + I+ S G++         +  +  
Sbjct: 479 CIVLPGATKEAACLTAERIRERINSRELLLGKGVMLRISASFGVSGSDESGQYDVEFLQS 538

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY AK+ GRNRV C
Sbjct: 539 VADKRLYQAKQDGRNRVCC 557


>gi|262379658|ref|ZP_06072814.1| diguanylate cyclase [Acinetobacter radioresistens SH164]
 gi|262299115|gb|EEY87028.1| diguanylate cyclase [Acinetobacter radioresistens SH164]
          Length = 525

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 52/161 (32%), Positives = 73/161 (45%), Gaps = 8/161 (4%)

Query: 99  RISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            +      D L+GLLN      F   +       S++  DID+FK+IND +GH  GD+V+
Sbjct: 366 EMDHRINTDPLTGLLNRRGMQFFTKGMIDSKVPFSVLLIDIDHFKRINDTYGHDEGDEVL 425

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L+  ++  F       R GGEEF       ++QE    A   R  +E   IN      
Sbjct: 426 KTLAKIMLENFRKNDLCCRHGGEEFIVIIPNVNKQEVYESAERFRHAVETYIINNVG--- 482

Query: 216 IHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             IT+S GIA         + ++  AD  LY AK  GRN+V
Sbjct: 483 -RITVSIGIASWPESSNSFTEVLKIADNNLYHAKNHGRNQV 522


>gi|254497786|ref|ZP_05110555.1| truncated transposase [Legionella drancourtii LLAP12]
 gi|254352992|gb|EET11758.1| truncated transposase [Legionella drancourtii LLAP12]
          Length = 390

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 74/168 (44%), Gaps = 8/168 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S+L+  D L+ L N              +      L +   DID FK  ND + H  GD
Sbjct: 223 LSELTLHDPLTNLYNRRYLNEFLSRELVRIAREKNTLCVAMLDIDNFKNFNDTYSHLAGD 282

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  +   L   F       R GGEEF+   L  +   A       RK ++N+      
Sbjct: 283 EVLKSIGQLLARNFRKSDISFRFGGEEFSVILLNMTLDNAVQRMEQFRKQLKNTIAYYKD 342

Query: 213 GPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            P   ITIS G+AE       I  II  AD ALY AK++G++RV  ++
Sbjct: 343 RPLPGITISIGVAEAPQQGATIEEIIKAADHALYAAKEAGKDRVNSYN 390


>gi|77463595|ref|YP_353099.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides 2.4.1]
 gi|77388013|gb|ABA79198.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides 2.4.1]
          Length = 833

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 89/187 (47%), Gaps = 12/187 (6%)

Query: 85  ISGSILKELFISYNRIS--QLSRIDCLSGLLNHSAF----ISSLGSY--NEKLSIVFFDI 136
           IS     E      ++    ++R D L+GL N   F      ++ S      ++++  D+
Sbjct: 377 ISARRQAEDDRVMAQLQVFHMARHDMLTGLPNRHYFGDCYQEAVASLAPERSVAVLMLDL 436

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAIL 195
           D FK +ND  GHPVGD+V+  ++++L     +   V RLGG+EFA       SEQEA  L
Sbjct: 437 DGFKTVNDTRGHPVGDQVLCEVANRLRTSVRSTDTVARLGGDEFAVIQTPIRSEQEACDL 496

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  L   I  S+     G    +  S GIA  R H +    I+  AD ALY AK++GR  
Sbjct: 497 ARRLIAAI--SKPFDLEGAVPEVGASVGIAFARGHGDSAEEIMRYADVALYAAKQAGRGT 554

Query: 255 VVCFSDI 261
              F + 
Sbjct: 555 FRVFDEA 561


>gi|127513905|ref|YP_001095102.1| diguanylate cyclase [Shewanella loihica PV-4]
 gi|126639200|gb|ABO24843.1| diguanylate cyclase [Shewanella loihica PV-4]
          Length = 650

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 63/201 (31%), Positives = 101/201 (50%), Gaps = 8/201 (3%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA------ 117
           IL +N  L +  I +  ++  I   +  +       +S L+  D L+ L N         
Sbjct: 449 ILKQNKYLQLAVIVLGCIIMIILSIVAYKQSQKSKLLSILALTDHLTQLPNRRYTYSKGE 508

Query: 118 -FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
            +  S    ++ LSI+ FD D+FK++ND +GH +GDKV+  L++    +      VGR+G
Sbjct: 509 GYFKSKDEGHQPLSIILFDADHFKKVNDKYGHDIGDKVLIALANISNGLMRKQDLVGRVG 568

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236
           GEEF     G++ ++A  +A  L   +E+S  +     +  +TISAGIA     +    +
Sbjct: 569 GEEFLVILPGTTAEQALNVAQRLVTTVESSNFD-DVYMNFKLTISAGIACTDGDKSFEHL 627

Query: 237 IYRADQALYVAKKSGRNRVVC 257
           + RAD ALY AK SGRN  + 
Sbjct: 628 LKRADDALYRAKSSGRNCAIL 648


>gi|297539482|ref|YP_003675251.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297258829|gb|ADI30674.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylotenera sp. 301]
          Length = 1169

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 11/187 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           + + +   +   I + +  D L+GL N   F   L          N +L+++F D+D FK
Sbjct: 727 TDITQKTEAEQLIWKQANFDFLTGLPNRQMFHDRLNQEIKKTNRNNLQLALLFIDLDRFK 786

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +INDNFGH VGD ++   + +L         + RLGG+EF          + +++   ++
Sbjct: 787 EINDNFGHDVGDAMLKEAAIRLNKCVRETDTLSRLGGDEFTVIL--GQLNDLSVIERAVQ 844

Query: 201 KIIENSQINISSGPS-IHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCF 258
            I+         G   ++I+ S GIA          T++  ADQA+Y AK+ GRNR   F
Sbjct: 845 DILNKMTEAFYLGDEVVYISASVGIALYPDDASTNETLLTSADQAMYAAKQLGRNRYHYF 904

Query: 259 SDIENNT 265
           +     +
Sbjct: 905 TQAMQKS 911


>gi|253996421|ref|YP_003048485.1| PAS/PAC and Chase sensor-containing diguanylate
            cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
 gi|253983100|gb|ACT47958.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Methylotenera mobilis JLW8]
          Length = 1329

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 62/214 (28%), Positives = 92/214 (42%), Gaps = 15/214 (7%)

Query: 64   ILVENLSLVIISIT---ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
            I  + LS+  I      IS  +G IS   + E  ++  RI  LS  D L+ L N +    
Sbjct: 864  IYTQWLSISTIKDADGKISQHIGIIS--DISERKVAEERIQFLSNFDPLTNLPNKNLLND 921

Query: 121  S-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                           ++++F D+D FK IN++ G  +GD+V+  L+++ V        V 
Sbjct: 922  RTKLALATAKRLKTAVTLMFVDLDRFKFINESLGPSIGDQVVKELAERFVAYMRPEDTVC 981

Query: 174  RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEP 232
            R GG+EF      +  + AA +A  L  I+   Q     G  I +T S GI A     E 
Sbjct: 982  RQGGDEFILLLPNTDAEGAAHVAKKLLDIVA--QPFNFHGQKIVLTASIGISAYPQDGES 1039

Query: 233  ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
               +   AD ALY AK  GRN    F+   +   
Sbjct: 1040 FEQLAQSADAALYRAKYEGRNNFQFFARQMHEQA 1073


>gi|254286348|ref|ZP_04961306.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|150423515|gb|EDN15458.1| GGDEF family protein [Vibrio cholerae AM-19226]
          Length = 353

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 112/258 (43%), Gaps = 29/258 (11%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           IW C       F P  F I+ S  F+   + +  I    + Y          + L +  +
Sbjct: 98  IWSC-------FVPILFYIFTSARFAFVTSCLFLIIQSNIIY----------WQLQQTGA 140

Query: 71  LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAF---ISSL 122
            +  S+ + L   YI   ++  ++    R     +  L+  D L+G  N  +        
Sbjct: 141 AISWSVLLHLCFAYIGIWVVAHVYEENRRKIENSLLYLASRDPLTGAHNRLSLTTSFQHF 200

Query: 123 GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
             +N++  L ++  D+D+FK IND FGH  GDKV+   +     V G    + R+GGEEF
Sbjct: 201 ERFNDQTSLCLLVIDLDFFKSINDQFGHDTGDKVLIETTRLFAQVVGDNN-LYRIGGEEF 259

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                  S ++A  +   LR I+            + +TIS G+ E    + ++ ++  A
Sbjct: 260 CVTLFDQSLEQAGRVCERLRAIVSQHLFAFGE-KRVQVTISIGVCEYQAGDQLNDLLKFA 318

Query: 241 DQALYVAKKSGRNRVVCF 258
           D  LY AKK+GRN+V  F
Sbjct: 319 DMELYRAKKAGRNQVRLF 336


>gi|94266780|ref|ZP_01290446.1| GGDEF:GAF [delta proteobacterium MLMS-1]
 gi|93452549|gb|EAT03132.1| GGDEF:GAF [delta proteobacterium MLMS-1]
          Length = 376

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 17/173 (9%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFG 147
             Y   S  +  D L+GL N     + L             L+++  D+D+FKQ ND  G
Sbjct: 213 RRYEEKSAEAGQDVLTGLANRRQLNTELERDWATAQREKSSLAVIMLDLDHFKQYNDTHG 272

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+++  +   +           R GGEEF      + +  A  +A  LR+ +    
Sbjct: 273 HLAGDRLLREMGQIMRDCVRCEDLPVRYGGEEFLVLLRRAGDARAEAVAERLREAVAART 332

Query: 208 INISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                     +T+S G+A    +      ++ RAD+ALY AK+ GR+RV  +S
Sbjct: 333 ---------EVTVSLGVAGSNQNDHDPWQMVQRADEALYQAKQQGRDRVRVYS 376


>gi|307154354|ref|YP_003889738.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
 gi|306984582|gb|ADN16463.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
          Length = 355

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 11/179 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           EL      + +L+ +D L+ + N   F                 LS++  DIDYFK  ND
Sbjct: 170 ELQALNEVLKRLATLDGLTQIANRLQFDYYLKQEWKRAQREQVPLSLIMSDIDYFKDYND 229

Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH VGD  +  +++ +   V+       R GGEEFA     +  Q A ++A  +   I
Sbjct: 230 CYGHLVGDDCLKLVAETINKTVWRPGDLAARYGGEEFAVILPNTDVQGAMLVAERMCWEI 289

Query: 204 ENSQINISSGP-SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +I  +    S ++T+S G+A           TI+  AD ALY AK  GR+R++ F+
Sbjct: 290 RHLKIPHAHSRVSEYVTLSLGVAGIIPRPGLSSKTILDAADHALYQAKAQGRDRIILFN 348


>gi|183220727|ref|YP_001838723.1| hypothetical protein LEPBI_I1337 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910828|ref|YP_001962383.1| GGDEF domain-containing response regulator [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167775504|gb|ABZ93805.1| Response regulator, GGDEF family [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779149|gb|ABZ97447.1| Conserved hypothetical protein with GGDEF domain [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 353

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 90/173 (52%), Gaps = 9/173 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
             R+ +L+ +D ++GL  H  F       +        KLS++F D+D FK  ND +GH 
Sbjct: 181 NARLYELATVDMMTGLKIHHYFQTKLKEEMERCRKKGTKLSLLFTDVDKFKTFNDTYGHQ 240

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI- 208
            GD V+  ++ QL+          R GGEEF     G+SE+EA     ++RK +E   + 
Sbjct: 241 AGDVVLIEVAKQLIQKAQRHHIPARYGGEEFCLVMPGASEEEAIAKGEEIRKAVEEMVVK 300

Query: 209 NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           N +    + +T+S G++  R        +I RAD+ALY AK SGRNR +C+ D
Sbjct: 301 NPNDDSDLKVTLSVGVSSFRPTDRNNKDLIERADKALYQAKHSGRNRTICYKD 353


>gi|325289534|ref|YP_004265715.1| diguanylate cyclase [Syntrophobotulus glycolicus DSM 8271]
 gi|324964935|gb|ADY55714.1| diguanylate cyclase [Syntrophobotulus glycolicus DSM 8271]
          Length = 382

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 68/282 (24%), Positives = 120/282 (42%), Gaps = 39/282 (13%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSI---FFSIFIATVIFIANIFLF----YIGLTPFYGL 61
            +I +     L++ +     IY ++   F   F  + +    I+       + L P +  
Sbjct: 102 FAIAIARSLILQNHTFALPSIYIAVIYGFAVFFYLSPLVSFGIYFITCASVLILLPLFHP 161

Query: 62  EYILVENLSLVIISITISLLLGYISGSIL--------------KELFI-------SYNRI 100
           E +L+  +  ++ +  I+ +   IS                  +EL         +   +
Sbjct: 162 EIVLITYVQDIVTNNFIAWIASVISYRRYVREYRCQQTISDKNEELQAKTANIQKTNQTL 221

Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
             +S ID L+ + N                +  + +S++  D+D+FK IND +GH  GDK
Sbjct: 222 QYMSNIDDLTNIYNRRKLNEFLELEYERCRAAGKNISLILIDVDFFKAINDTYGHSAGDK 281

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+      L         VGR GGEEF      ++ +EA  LA  +R++++N    + + 
Sbjct: 282 VLEQFGKLLKQNVSLNNIVGRWGGEEFLMICPETNLEEAVCLAEKIRRMVQNDDFKLEN- 340

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               +T S G+A   + + I+ +I RAD+ LY AK  GRNRV
Sbjct: 341 ---QVTCSLGVATNQNIDTITNLIIRADRGLYRAKALGRNRV 379


>gi|313199910|ref|YP_004038568.1| PAS/PAC/GAF sensor-containing diguanylate cyclase [Methylovorus sp.
           MP688]
 gi|312439226|gb|ADQ83332.1| diguanylate cyclase with PAS/PAC and GAF sensors [Methylovorus sp.
           MP688]
          Length = 453

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 13/184 (7%)

Query: 81  LLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
           LL ++S  I    E      R+ QL++ D L+ L N           +SS       L++
Sbjct: 264 LLQFVSTQIATAIERQKMQARLQQLAQYDALTTLPNREYLTHKLEAALSSAEREQRHLAL 323

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQ 190
           ++ D+D FKQ+ND+ GH  GD ++  ++ +L +       V RLGG+EF       SS  
Sbjct: 324 LYLDLDKFKQVNDSLGHDAGDTLLQEVAARLKLSMRETDMVARLGGDEFVVLLQDISSPD 383

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
           +AA++   LR ++   Q     G  + I  S GIA    H +    ++  AD+A+Y  K 
Sbjct: 384 QAAMVVEKLRGVLA--QPFEIDGHRLAIRPSIGIALYPDHGQDRHALLKHADKAMYQEKH 441

Query: 250 SGRN 253
             RN
Sbjct: 442 GERN 445


>gi|293603220|ref|ZP_06685653.1| GGDEF domain protein [Achromobacter piechaudii ATCC 43553]
 gi|292818451|gb|EFF77499.1| GGDEF domain protein [Achromobacter piechaudii ATCC 43553]
          Length = 266

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 7/183 (3%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFF 134
           +  IS      +      + + S  D L+GLLN  A +              E   +   
Sbjct: 79  IARISDHYQNMMRDLNAALEETSSRDPLTGLLNRRALMDMIKQEVERASRSGESFIVAML 138

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D+FK +ND +GH  GD+ +  L+  L          GR GGEEF      +    A  
Sbjct: 139 DVDHFKAVNDRYGHETGDRALVELAGVLRQSLRGGDLCGRWGGEEFLVMLPNTQPDAAQG 198

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + + L   +    I +     + +T+S G+A+    E  S  + RADQALY+AK+ GR+R
Sbjct: 199 VMDRLVGAVRGLAIAVGENDVLRLTVSIGMAQHQLGETFSETLSRADQALYLAKQDGRDR 258

Query: 255 VVC 257
           V  
Sbjct: 259 VAL 261


>gi|262192283|ref|ZP_06050439.1| sensory box/GGDEF family protein [Vibrio cholerae CT 5369-93]
 gi|262031833|gb|EEY50415.1| sensory box/GGDEF family protein [Vibrio cholerae CT 5369-93]
          Length = 579

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 11/179 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +LS +D L+ + N   F   L           + LSI+  D+DYFK  N
Sbjct: 397 EQLEAANQELERLSFLDSLTHVANRRRFDEQLHTLWHLHVREGKPLSIILCDVDYFKDYN 456

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH +GD+ +  ++     V       V R GGEEF      + +  A ++A  + + 
Sbjct: 457 DAYGHLMGDETLKQIAIAFTQVANRHSDCVARYGGEEFGILLPNTPQAGAILVAERIHEK 516

Query: 203 IENSQINISSGPSI-HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +    I          IT+S GI       ++    ++  AD+ALY AK +GRN+   +
Sbjct: 517 VRGLAIPHEHSKVADRITVSLGIVTLIPRPEDVPEQMVELADRALYQAKANGRNQTSIY 575


>gi|241203649|ref|YP_002974745.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240857539|gb|ACS55206.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 781

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 13/188 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           +T+  L  +I+G  + E     +RI  ++  D L+GL N +     L          N K
Sbjct: 327 MTLVALATHIAGIAI-ERKRVDDRIHFMAHHDDLTGLPNRAFLKERLASILDQARRNNRK 385

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +++ + D+D FK IND  GH  GD+V+  ++ ++         V RLGG+EF    +  S
Sbjct: 386 VTVAYIDLDNFKDINDGRGHAAGDEVLKEIATRMANSVRASDMVVRLGGDEFLVVLVHQS 445

Query: 189 EQEA--AILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALY 245
             +A       +L+K I N  I  + G  I IT S G+A           ++  AD+A+Y
Sbjct: 446 SHDAGITRRLRELQKAI-NRPIRGADG-EITITSSIGVAAFPFDGATSEELLANADRAMY 503

Query: 246 VAKKSGRN 253
            AK+ GRN
Sbjct: 504 RAKELGRN 511


>gi|89899824|ref|YP_522295.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Rhodoferax ferrireducens T118]
 gi|89344561|gb|ABD68764.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 1051

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 61/211 (28%), Positives = 92/211 (43%), Gaps = 14/211 (6%)

Query: 67  ENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-- 123
           E LS+  +     L+  Y+   S + E  IS  +I +L+  D L+GL N    I  L   
Sbjct: 582 EWLSINAVKDAAGLVTHYVGVFSDITERKISEEKIDRLAFYDALTGLPNRRLMIDRLQQA 641

Query: 124 -----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                 ++ K +++  D+D FK +ND  GH  GD ++   + +L         V R+GG+
Sbjct: 642 LAATARHHCKGALLLVDLDNFKTLNDTLGHDQGDLLLQHAARRLSACLRESDTVARVGGD 701

Query: 179 EFAAAALGS--SEQEAAILANDL-RKIIENSQINISSGPSIHI-TISAGIAERC--HKEP 232
           EF         S+QE A  A  L  KII+        G S H  T S GI       +E 
Sbjct: 702 EFIVLMEDMSQSDQEVATQAKALGEKIIDTLGQPYQFGSSSHYSTASIGITLFDGAQQES 761

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
               + + + A+Y AK +GRN +  F     
Sbjct: 762 TEEPMKQVELAMYQAKAAGRNTLRFFDPQMQ 792


>gi|87122912|ref|ZP_01078778.1| sensory transduction/ GGDEF family protein [Marinomonas sp. MED121]
 gi|86161812|gb|EAQ63111.1| sensory transduction/ GGDEF family protein [Marinomonas sp. MED121]
          Length = 416

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 14/200 (7%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           L+E   +      I   L  ++G +  E      +++ L+  D L+GL N    +     
Sbjct: 219 LIERRIVWNNQDAIQTTLIDVTGQVEME-----KKLTLLAMTDSLTGLFNRRFLMEKSAQ 273

Query: 125 -------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                      L+ +  D+D FK++ND FGH +GD+++   S++   +   P  +GR GG
Sbjct: 274 IFDLQQSLKLPLACILIDLDKFKRVNDKFGHNIGDEILKAFSNRCQRMIQEPHIIGRYGG 333

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTI 236
           EEF      ++ ++A  LAN LR++ +   I   +G  + +T+SAGI+     +     +
Sbjct: 334 EEFLVVMPNTNPEDAVTLANTLRQMCDEEAIETGAG-DLKVTMSAGISTLNTDDTHFDQL 392

Query: 237 IYRADQALYVAKKSGRNRVV 256
           + RAD+ LY AK  GRNRVV
Sbjct: 393 VDRADKRLYEAKALGRNRVV 412


>gi|163851650|ref|YP_001639693.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163663255|gb|ABY30622.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 803

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 82/188 (43%), Gaps = 12/188 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           +   + E   +  RI+ ++  D L+GL N + F + L              +++  D+D 
Sbjct: 360 AAIDVTEQRRAEARITHMAHHDALTGLPNRALFTTRLAEAITEHARTGAGAALLCLDLDK 419

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND  GHP GD ++  ++D++         V RLGG+EFA           + +A  
Sbjct: 420 FKLVNDTLGHPAGDTLLRAVADRITACLHGEDLVARLGGDEFAVLLRTPDAGTVSAVAGR 479

Query: 199 LRKIIENSQINISSG-PSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +   IE     +  G     I +S GIA    H     T++  AD ALY AK  G +   
Sbjct: 480 I---IEALSHPVRLGDRECQIGVSVGIACLPEHGTDSDTLLRHADLALYRAKADGGSIAH 536

Query: 257 CFSDIENN 264
           CF    ++
Sbjct: 537 CFEAAMDS 544


>gi|117918998|ref|YP_868190.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella sp. ANA-3]
 gi|117611330|gb|ABK46784.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella sp. ANA-3]
          Length = 572

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 11/184 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            S+   L  S+ ++ +L+  D L+ L+N   F       I+     N+ L+++  D+D F
Sbjct: 123 SSMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNRAIARAKRSNDFLAVILLDLDDF 182

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILAND 198
           K IND  GH  GD ++  ++ +L  V      + RLGG+EF      +  +    I+AN 
Sbjct: 183 KAINDTLGHQTGDILLVKVASRLSSVLRDGDVIARLGGDEFVVLVTDNDYKYFPMIVANR 242

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
           L K  E  ++       + I  S G+A         S ++  AD A+Y AKK GRN++  
Sbjct: 243 LLKAFE--EVFCLGENDVMIGASIGVAFYNEAASDSSELMKCADIAMYRAKKMGRNQIQF 300

Query: 258 FSDI 261
           +S+ 
Sbjct: 301 YSEA 304


>gi|327481423|gb|AEA84733.1| sensory box protein [Pseudomonas stutzeri DSM 4166]
          Length = 400

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 91/185 (49%), Gaps = 14/185 (7%)

Query: 81  LLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSI 131
           LL ++S  ++   E    Y R+ ++++ D L+GL N + F   L            ++++
Sbjct: 213 LLQFVSTQVVTAIERKQLYARLERMAQYDELTGLPNRACFRDRLSTALARVRRNGGRIAL 272

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQ 190
           ++ D+D FKQ+ND +GH  GD+++  ++++L         V RLGG+EF          +
Sbjct: 273 LYLDLDRFKQVNDTYGHGGGDQLLQTVAERLGGCVRDTDTVARLGGDEFVVLLESIIDAE 332

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKK 249
           +A  +   +R   E       +G S+ I +S GIA       +   ++ +AD+ +Y+ K 
Sbjct: 333 DAQRVVAKIRDAFEAPLP--IAGHSLEIGMSIGIALYPEDGDVEAQLLKQADERMYLMKS 390

Query: 250 SGRNR 254
           S R +
Sbjct: 391 S-RGQ 394


>gi|320107961|ref|YP_004183551.1| diguanylate cyclase [Terriglobus saanensis SP1PR4]
 gi|319926482|gb|ADV83557.1| diguanylate cyclase [Terriglobus saanensis SP1PR4]
          Length = 636

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 86/173 (49%), Gaps = 9/173 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144
           EL     RI   +  D L+GL NH   +  L    E        LS++  D+D+FK++ND
Sbjct: 456 ELMRESERIRHYAEHDGLTGLWNHRIIVQRLRQELERSRREKVPLSVILIDVDHFKKVND 515

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGHPVGD V+  LS   +    T  + GR GGEEF     G S + A   A +LR  ++
Sbjct: 516 TFGHPVGDLVLKELSAIFMSSLRTHDWGGRYGGEEFLLILPGCSIEGALSRAEELRLAVQ 575

Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +++I +     + +T S G+A           +I   D ALY AK SGRN VV
Sbjct: 576 SARI-MDGETMLEVTASFGVASNFTSNHEYEAVIRVVDTALYRAKSSGRNCVV 627


>gi|87120354|ref|ZP_01076249.1| hypothetical protein MED121_09183 [Marinomonas sp. MED121]
 gi|86164457|gb|EAQ65727.1| hypothetical protein MED121_09183 [Marinomonas sp. MED121]
          Length = 505

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 58/167 (34%), Positives = 84/167 (50%), Gaps = 9/167 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
             +I+Q +  D ++ L N SA+  S+           + L +   DID+FK++ND +GH 
Sbjct: 339 QQKIAQ-ATTDTVTNLPNRSAYQDSIMPMCLLAQKSKKPLILGVLDIDHFKKVNDTWGHL 397

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GDKV+  L  QL  V      + R GGEEF       + +     A  +R  +E    N
Sbjct: 398 AGDKVLNLLPRQLKNVMSEKDLLFRYGGEEFVFLLPNCNLETGQSKAEAIRLAVEKMPFN 457

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +G  + ITIS GIA+  + E    +  RAD+ LY AK  GRNRVV
Sbjct: 458 V-NGEPVPITISIGIAQLANNEKHEELFDRADKYLYQAKSDGRNRVV 503


>gi|315126736|ref|YP_004068739.1| hypothetical protein PSM_A1661 [Pseudoalteromonas sp. SM9913]
 gi|315015250|gb|ADT68588.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 424

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 12/206 (5%)

Query: 64  ILVENLSLVIISIT-ISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           I+ ++ S VI+ ++ IS+   +I+  +   E   +   +S ++ +D L+ + N   F   
Sbjct: 215 IVCKDGSKVIMQVSGISVESEFIAVFNDATERLKTQEILSDMAFLDSLTKIANRRRFDEK 274

Query: 122 LGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVG 173
           L +        N +LS++  DID FK+ ND +GH  GDK +  ++ +L   V     FV 
Sbjct: 275 LHAEFKKLIKVNTQLSMIIIDIDNFKKFNDRYGHIAGDKCLHSVAQKLAETVSRPEDFVA 334

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEF      +  Q A  +A  ++K IE+  I      +  +++S G+    H E  
Sbjct: 335 RYGGEEFVVLLPQTDNQGALFIAEQIQKSIEDLAIAHEDSFTGFLSVSMGVHTVKHGEKT 394

Query: 234 S--TIIYRADQALYVAKKSGRNRVVC 257
           +        D ALY AK+ GRN +  
Sbjct: 395 NHVDFFKATDSALYYAKRQGRNCIAL 420


>gi|186471654|ref|YP_001862972.1| diguanylate cyclase [Burkholderia phymatum STM815]
 gi|184197963|gb|ACC75926.1| diguanylate cyclase [Burkholderia phymatum STM815]
          Length = 202

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 12/193 (6%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125
           +SL ++   + L+L   + S + +       +      D L+  LN  AF    G     
Sbjct: 1   MSLALMGAVLGLVLPAAAMSDVIDRLTLERDL------DSLTETLNRRAFERMAGRRVAD 54

Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
             +  L+++ FDID FK IND +GH  GD V+   +  L         V R+GGEEF   
Sbjct: 55  RRSYPLALIAFDIDNFKSINDRYGHAAGDAVLRQFAAILRAAVREKDVVARIGGEEFVLL 114

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
             G+ ++ A  +A  LR ++E+S+ N     ++ +T SAGIA     E +  ++ RAD  
Sbjct: 115 LPGADDKFAYQIAERLRIVLESSRFNEIE-ATLRVTTSAGIARHRPGETVGALLARADHL 173

Query: 244 LYVAKKSGRNRVV 256
           LY AK++GRNRVV
Sbjct: 174 LYAAKRAGRNRVV 186


>gi|34497075|ref|NP_901290.1| hypothetical protein CV_1620 [Chromobacterium violaceum ATCC 12472]
 gi|34102932|gb|AAQ59296.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 816

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 12/190 (6%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFD 135
             I    + E      +++ L+  D L+ L N           +       ++L +   D
Sbjct: 373 AIIVFHDVSEARAMAVKMTHLAHHDALTNLPNRMLLQDRTQQALQQAAHSGDRLGLYILD 432

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAI 194
           ID+FK IND+ GH VGD+++  ++ +L         V R GG+EF     G    ++A  
Sbjct: 433 IDHFKVINDSMGHSVGDQLLQRVARRLQAALRPCDTVSRQGGDEFIILVPGLGGIEQAGA 492

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253
           +A+ + K I  S+  +  G    ++ S G+            +   AD A+Y AK+ GRN
Sbjct: 493 MADKMLKAI--SEPYLLDGNRYDLSGSIGVGIYPDDSKNQEELYRHADAAMYRAKQEGRN 550

Query: 254 RVVCF-SDIE 262
           R   F S+IE
Sbjct: 551 RYRFFSSEIE 560


>gi|120553240|ref|YP_957591.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Marinobacter aquaeolei VT8]
 gi|120323089|gb|ABM17404.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter aquaeolei VT8]
          Length = 709

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 14/185 (7%)

Query: 84  YISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFD 135
           Y++  S +  L      + + +  D L+GL N       L             L+I + D
Sbjct: 244 YVAAFSDITALKNHAKELDRAANYDDLTGLPNRQLLEERLRSAKAHADRQKRSLAICYLD 303

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D FK IND  GH  GD+ +  ++++L     +   V R+GG+EF     G   +    L
Sbjct: 304 LDGFKGINDELGHDFGDEALRMVAERLTRSLRSGDTVARIGGDEFVLLIQGDHSE---PL 360

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
              +   +  S+    +   +++T S G+      +     ++  ADQA+Y AK+ GRN+
Sbjct: 361 YQRILTSV--SEPFELADKEVNLTASLGVTLYPEDDTDAEGLVRHADQAMYAAKEKGRNQ 418

Query: 255 VVCFS 259
              F 
Sbjct: 419 FHIFD 423


>gi|313650578|gb|EFS14981.1| uncharacterized ydaM domain protein [Shigella flexneri 2a str.
           2457T]
          Length = 221

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 49  DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 107

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 108 HINDLYGHSKGDEVLCALARPLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 167

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 168 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 218


>gi|299530172|ref|ZP_07043598.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni S44]
 gi|298721829|gb|EFI62760.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni S44]
          Length = 829

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 87/205 (42%), Gaps = 11/205 (5%)

Query: 68  NLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY- 125
            LS V +      L+  I     +     +  +I QL+  D L+GL N  +    + +  
Sbjct: 343 WLSWVALRDGYGRLVQSIGFMRDMTMQRSAQKQIEQLAYSDALTGLPNRLSLSRHVQAAI 402

Query: 126 ------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                  +  SI+F D+D FK IND+ GH  GD+V+  ++ +L  +      + R GG+E
Sbjct: 403 TAARFTQQPFSILFLDLDRFKIINDSLGHDFGDRVLKLVAQRLSGLLRPADVLCRQGGDE 462

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIY 238
           F       + + A+ +A  +    E  Q  +  G    +  S G A+       +  +I 
Sbjct: 463 FVLYLHDCTGEGASAVAARILD--EMRQPFMLDGLGFSVQCSIGAAQFPADGLTLDELIR 520

Query: 239 RADQALYVAKKSGRNRVVCFSDIEN 263
           +AD A+Y  K+ GR     +    +
Sbjct: 521 QADIAMYRVKERGRGNFSFYQPQMS 545


>gi|221067708|ref|ZP_03543813.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Comamonas testosteroni KF-1]
 gi|220712731|gb|EED68099.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Comamonas testosteroni KF-1]
          Length = 827

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 11/205 (5%)

Query: 68  NLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY- 125
            LS V +      L+  I     +     +  +I QL+  D L+GL N  +    + +  
Sbjct: 341 WLSWVALRDGYGRLVQSIGFMRDMTMQRSAQKQIEQLAYSDALTGLPNRLSLSRHVQAAI 400

Query: 126 ------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                  +  SI+F D+D FK IND+ GH  GD+V+  ++ +L  +      + R GG+E
Sbjct: 401 TAARFTQQPFSILFLDLDRFKIINDSLGHDFGDRVLKLVAQRLGGLLRPADVLCRQGGDE 460

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIY 238
           F       + + A+ +A  + +  E  Q  +  G    +  S G A+       +  +I 
Sbjct: 461 FVLYLHDCTGEGASAVAARILE--EMRQPFMLDGLGFSVQCSIGAAQFPTDGLTLDELIR 518

Query: 239 RADQALYVAKKSGRNRVVCFSDIEN 263
           +AD A+Y  K+ GR     +    +
Sbjct: 519 QADIAMYRVKERGRGNFSFYQPQMS 543


>gi|71906064|ref|YP_283651.1| PAS:GGDEF [Dechloromonas aromatica RCB]
 gi|71845685|gb|AAZ45181.1| PAS:GGDEF protein [Dechloromonas aromatica RCB]
          Length = 715

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 11/179 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + +       +   ++ D L+ L N + F   L         Y+E+ ++++ D+D+FK 
Sbjct: 534 DITQRKEVEELLRHRAQSDPLTDLPNRTLFYDRLQVALTHARRYSEEFALLYIDLDHFKI 593

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD+++   S +L         V RLGG+EFA     +  Q  + +    ++
Sbjct: 594 VNDTLGHAAGDELLIEASHRLTQAVRQSDTVARLGGDEFAVILPKTGSQ--SEIEEVAQR 651

Query: 202 IIENS-QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           ++E   +  + S  +I+I+ S G+A    H E +  I   AD ALY  K+SGRN    +
Sbjct: 652 VVETMVRPFLLSAGTINISTSVGVAIYPRHGEDLEAIRASADAALYSVKQSGRNGYRLY 710


>gi|300932099|ref|ZP_07147387.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
 gi|300460134|gb|EFK23627.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
          Length = 443

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 121/237 (51%), Gaps = 19/237 (8%)

Query: 30  YFSIFFSIFIATVIFIAN--IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           Y  I+  I + +++ + N  I L++I  +      + + + L L+ +   IS L+ Y+  
Sbjct: 218 YSKIWLCIILISIVSVCNNLILLYFIDKS---HPAWYMTKFLELISMIYIISTLMYYV-- 272

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQINDN 145
                 F   N  + ++  D L+   N   FI SL   S +   S++  DID FK IND 
Sbjct: 273 ------FRKLNHANHMAIHDPLTNTYNRRYFIDSLKNISKHHDFSVIMLDIDNFKSINDK 326

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH +GD+VI  ++  +         +GRLGGEEF     G++++    +A  +RK IE 
Sbjct: 327 WGHHMGDQVIVMVTRIIKKSIRKEDILGRLGGEEFGIIIKGNTQKLLLSIAERIRKNIEE 386

Query: 206 --SQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             S+  +S GP   IT+S G    + +    S ++  AD+ALY AK++G+N+V+  S
Sbjct: 387 QCSKKLLSHGPE-EITVSIGCFTSKENNLSPSEMLVNADKALYQAKRTGKNKVITHS 442


>gi|322432880|ref|YP_004210129.1| diguanylate cyclase with beta propeller sensor [Acidobacterium sp.
           MP5ACTX9]
 gi|321165107|gb|ADW70811.1| diguanylate cyclase with beta propeller sensor [Acidobacterium sp.
           MP5ACTX9]
          Length = 975

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 9/175 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQI 142
           L+    +++ + + +  D L+ L N  A +             +  + ++  D+D+FK++
Sbjct: 785 LQAAASAHDALHEQATKDGLTRLWNRRAILEILTREVDRARRDSGSVCVLMVDVDHFKRV 844

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD V+  ++ ++  +       GR GGEEF     G +  +    A + R  
Sbjct: 845 NDTLGHVAGDCVLEEVAARINGLIRPYDSAGRYGGEEFLVVLPGCTLADGLQRAEEFRYA 904

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I N    + +G SI +T S G+A          +I  ADQALY AK +GRNR+  
Sbjct: 905 IANEPTCVDAG-SIDVTCSFGVAAES-GTSAEHLIISADQALYAAKHAGRNRIQA 957


>gi|264677957|ref|YP_003277864.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni
           CNB-2]
 gi|262208470|gb|ACY32568.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni
           CNB-2]
          Length = 829

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 87/205 (42%), Gaps = 11/205 (5%)

Query: 68  NLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY- 125
            LS V +      L+  I     +     +  +I QL+  D L+GL N  +    + +  
Sbjct: 343 WLSWVALRDGYGRLVQSIGFMRDMTMQRSAQKQIEQLAYSDALTGLPNRLSLSRHVQAAI 402

Query: 126 ------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                  +  SI+F D+D FK IND+ GH  GD+V+  ++ +L  +      + R GG+E
Sbjct: 403 TAARFTQQPFSILFLDLDRFKIINDSLGHDFGDRVLKLVAQRLSGLLRPADVLCRQGGDE 462

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIY 238
           F       + + A+ +A  +    E  Q  +  G    +  S G A+       +  +I 
Sbjct: 463 FVLYLHDCTGEGASAVAARILD--EMRQPFMLDGLGFSVQCSIGAAQFPADGLTLDELIR 520

Query: 239 RADQALYVAKKSGRNRVVCFSDIEN 263
           +AD A+Y  K+ GR     +    +
Sbjct: 521 QADIAMYRVKERGRGNFSFYQPQMS 545


>gi|115523955|ref|YP_780866.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
 gi|115517902|gb|ABJ05886.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
          Length = 458

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 65/171 (38%), Positives = 88/171 (51%), Gaps = 11/171 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL     R++ L+  D L+GL N   F  +L         Y   LS+V FD+D FK +ND
Sbjct: 276 ELRDRAKRLAVLATTDRLTGLYNRLKFDEALASEIARAKRYKTPLSLVMFDVDLFKTVND 335

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GHP+GD+V+  LSD +           R GGEEFA    GS+  EA ++A  LR  I 
Sbjct: 336 RYGHPIGDRVLVGLSDLISSHLRETDMFARWGGEEFAILVTGSNHMEAHVVAEKLRIAI- 394

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               +++      IT S G+ E    +   T++ RAD ALY AK  GRNRV
Sbjct: 395 ---THVAFDQVGRITCSFGVTEYRDGDIPETLVDRADGALYQAKLKGRNRV 442


>gi|332757681|gb|EGJ88012.1| hypothetical protein SF434370_1707 [Shigella flexneri 4343-70]
 gi|332760194|gb|EGJ90490.1| hypothetical protein SFK671_1708 [Shigella flexneri K-671]
 gi|333004453|gb|EGK23983.1| hypothetical protein SFVA6_2205 [Shigella flexneri VA-6]
 gi|333004777|gb|EGK24299.1| hypothetical protein SFK218_2143 [Shigella flexneri K-218]
 gi|333018579|gb|EGK37873.1| hypothetical protein SFK304_1898 [Shigella flexneri K-304]
          Length = 230

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 58  DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 116

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 117 HINDLYGHSKGDEVLCALARPLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 176

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 177 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 227


>gi|262163932|ref|ZP_06031671.1| hypothetical protein VMA_000372 [Vibrio mimicus VM223]
 gi|262027460|gb|EEY46126.1| hypothetical protein VMA_000372 [Vibrio mimicus VM223]
          Length = 684

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+GL N   F   L    +    L +++ DID FK IND+ GH +GDKVI  ++ 
Sbjct: 256 AHIDSLTGLYNRHGFTKRLEQCIQNETPLVLLYLDIDNFKNINDSLGHHIGDKVIKEVAA 315

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHIT 219
           +L  +      +G LGG+EF            A +LA+ +  +I  +Q       S  + 
Sbjct: 316 RLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLI--NQPFDLHHFSKRLA 373

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +           ++  AD A+Y AK+ GRNR++ F+D  N   
Sbjct: 374 CSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEA 421


>gi|254225298|ref|ZP_04918910.1| GGDEF family protein [Vibrio cholerae V51]
 gi|125622139|gb|EAZ50461.1| GGDEF family protein [Vibrio cholerae V51]
          Length = 353

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 112/258 (43%), Gaps = 29/258 (11%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           IW C       F P  F I+ S  F+   + +  I    + Y          + L +  +
Sbjct: 98  IWSC-------FVPILFYIFTSARFAFVTSCLFLIIQSNIIY----------WQLQQTGA 140

Query: 71  LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAF---ISSL 122
            +  S+ + L   YI   ++  ++    R     +  L+  D L+G  N  +        
Sbjct: 141 AISWSVLLHLCFAYIGIWVVAHVYEENRRKIENSLLYLASRDPLTGAHNRLSLTTSFQHF 200

Query: 123 GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
             +N++  L ++  D+D+FK IND FGH  GDKV+   +     V G    + R+GGEEF
Sbjct: 201 ERFNDQTSLCLLVIDLDFFKSINDQFGHDTGDKVLIETTRLFAQVVGDNN-LYRIGGEEF 259

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                  S ++A  +   LR I+            + +TIS G+ E    + ++ ++  A
Sbjct: 260 CVTLFDQSLEQAGRVCERLRAIVSKHLFAFGE-KRVQVTISIGVCEYQAGDQLNDLLKFA 318

Query: 241 DQALYVAKKSGRNRVVCF 258
           D  LY AKK+GRN+V  F
Sbjct: 319 DMELYRAKKAGRNQVRLF 336


>gi|85711920|ref|ZP_01042975.1| Signaling protein with a acyltransferase and GGDEF domains
           [Idiomarina baltica OS145]
 gi|85694317|gb|EAQ32260.1| Signaling protein with a acyltransferase and GGDEF domains
           [Idiomarina baltica OS145]
          Length = 594

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 82/177 (46%), Gaps = 11/177 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L+EL  + N + Q +  D L+GL N   F   +             + ++  DID FK +
Sbjct: 413 LRELQEANNELEQRNLEDPLTGLHNRRYFTQQIEREYRRSRRNQRPMCLLMIDIDKFKAV 472

Query: 143 NDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH VGD ++  +S +L          V R GGEEFA     +  Q   + A  L K
Sbjct: 473 NDTYGHGVGDDILQAVSTELRKQARRPTDAVCRYGGEEFAFILAETDLQNGLVFAERLVK 532

Query: 202 IIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVV 256
            I     +   G    ITISAG+A   +     +  +   AD ALY AK+ GR++VV
Sbjct: 533 HIRQCVFSTRDG-EHSITISAGVAAIDNTRDHSVHDLFTAADSALYKAKREGRDQVV 588


>gi|295688296|ref|YP_003591989.1| diguanylate cyclase/phosphodiesterase [Caulobacter segnis ATCC
           21756]
 gi|295430199|gb|ADG09371.1| diguanylate cyclase/phosphodiesterase [Caulobacter segnis ATCC
           21756]
          Length = 610

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 55/194 (28%), Positives = 86/194 (44%), Gaps = 18/194 (9%)

Query: 87  GSILKELFISYN-------RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           G++L  L  S         +I++L+  D L+ L N   F  SL           ++L++ 
Sbjct: 120 GTVLALLQASNETNRRGVAQIARLAHYDPLTDLPNRVLFQKSLTEALARRARKGDQLAVH 179

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQE 191
           F D+D FK +ND  GHP+GD ++   +++L         V RLGG+EFA    G +    
Sbjct: 180 FIDLDRFKTVNDTLGHPLGDALLREAAERLRRCVREGDTVARLGGDEFAVVQTGLTDMAG 239

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKS 250
           A  LA  +   +        +G  + I  S G+ A     E +  ++ +AD ALY AK  
Sbjct: 240 ATRLAARIVTAMAA--PFDLAGHQVVIGASVGVSAAPYDGEDVDELLKKADMALYRAKGD 297

Query: 251 GRNRVVCFSDIENN 264
           GR     F    + 
Sbjct: 298 GRGAFHFFEQAMDE 311


>gi|261252650|ref|ZP_05945223.1| GGDEF family protein [Vibrio orientalis CIP 102891]
 gi|260936041|gb|EEX92030.1| GGDEF family protein [Vibrio orientalis CIP 102891]
          Length = 368

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 9/173 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           K+L     ++ +L+  D L+ L N    I  L +Y       +E L  +  D+DYFKQ+N
Sbjct: 193 KQLSRVNKQLEELTLTDSLTQLPNRRCAIRKLKAYWQESAENDEPLVCIMIDVDYFKQVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+++  L+  L   F +   V RLGG+EF      +  +    +A  +R  +
Sbjct: 253 DTAGHDAGDRLLVELAQTLADSFRSDDLVCRLGGDEFFVICPNTESEGGVHIAERVRHKV 312

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
               + +        +IS G+ ER  +    + +I  AD A+Y AK +GRNRV
Sbjct: 313 NQMLVPVGDSVWRG-SISVGVGERTPEMIDFNNLIKAADNAVYKAKSAGRNRV 364


>gi|298530671|ref|ZP_07018073.1| diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510045|gb|EFI33949.1| diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 358

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 100/205 (48%), Gaps = 24/205 (11%)

Query: 81  LLGYISGSILKELFISYNR----------ISQLSRIDCLSG-LLNHSAFIS-------SL 122
           ++GYI G+I + +  +             +   +R D L G L N S F           
Sbjct: 154 IIGYIRGTIKEIVTQARKEADSWENKARTLEHYARYDHLLGSLYNRSWFDEKIYSLTEQA 213

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFA 181
              N +L+++  D+D+FK IND++GH VGD V+  L+  +         +  R GGEE  
Sbjct: 214 LENNARLALLMIDVDHFKSINDSWGHQVGDDVLKALAKIIKEHAEVGSGYPCRYGGEELC 273

Query: 182 AAALGSSEQEAAILANDLRKIIENSQI-----NISSGPSIHITISAGIAERCHKEPISTI 236
                + EQ A + A +LR+ ++         + S G SI+ T+S G+AE         +
Sbjct: 274 IIFKDTDEQLAGVQAEELRREVQGYNFIPRKKDGSLGDSINFTVSIGVAELQKDWDAGML 333

Query: 237 IYRADQALYVAKKSGRNRVVCFSDI 261
           I  AD+ALY AK+SGRNR + FS++
Sbjct: 334 IGAADKALYHAKESGRNRAILFSEL 358


>gi|298530375|ref|ZP_07017777.1| response regulator receiver modulated diguanylate cyclase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509749|gb|EFI33653.1| response regulator receiver modulated diguanylate cyclase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 301

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 11/175 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144
           ++   Y  + Q + +D L+ + N   F   L    +        LS+   DID FKQ ND
Sbjct: 124 DMQHKYKLLEQKANLDGLTEIPNRRCFEEVLAREWQRGKRNASPLSVAMLDIDCFKQYND 183

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           ++GH  GD  +  ++  ++        + GR GGEEF      +  + + ++A  +R  I
Sbjct: 184 HYGHQTGDIALQRVARSIMDSLKRASDYAGRYGGEEFVILMPETPLESSLMVAERIRSDI 243

Query: 204 ENSQINIS-SGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255
           E+  I  + S  + H+T+S G+A      +     II RADQ +Y AK+SGRNRV
Sbjct: 244 ESLAIPHALSSIAPHLTVSIGVASTRDYAESGPEEIIKRADQHMYTAKQSGRNRV 298


>gi|86356799|ref|YP_468691.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|86280901|gb|ABC89964.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
          Length = 765

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 11/188 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVF 133
           L  +I+G  + E     +RI  ++  D L+GL N +     L          N K+++ +
Sbjct: 316 LATHIAGIAI-ERKRVDDRIHFMAHHDDLTGLPNRAFLKERLAGILDQARRNNRKVTVAY 374

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK +ND  GH  GD+V+  ++ ++         V RLGG+EF    +  S  +A 
Sbjct: 375 IDLDNFKDVNDGRGHAAGDEVLKEIATRMANCIRASDMVVRLGGDEFLVVLVHQSSHDAG 434

Query: 194 ILANDLRKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
            +A  LR + +     I  +   I IT S G+A           ++  AD+A+Y AK+ G
Sbjct: 435 -IARRLRDLQKAINRPIHGASGEIAITSSIGVAAFPVDGATSEELLANADRAMYRAKQLG 493

Query: 252 RNRVVCFS 259
           RN +    
Sbjct: 494 RNTLQHHD 501


>gi|296388339|ref|ZP_06877814.1| putative sensory box/GGDEF domain protein [Pseudomonas aeruginosa
           PAb1]
          Length = 307

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 8/163 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q +  D L+G  N  A   +LG   E        LS++  DID+FK++ND++GH VGD+ 
Sbjct: 145 QTALRDALTGTGNRIAMDQALGRELELARRNLQPLSVLMLDIDHFKRVNDHYGHTVGDEA 204

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +++ +         V R GGEEF      +  Q A ++   LR+ +E       +G 
Sbjct: 205 LKAVAETIKDHLRNVDMVFRFGGEEFLVLLSSTPLQAACMVGERLRQAVEELDYRH-AGE 263

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + ++IS G A+    E    ++ R D+ALY AK+ GRNR+ C
Sbjct: 264 PLKLSISLGCADLRPGEGSDDLLRRVDEALYEAKRDGRNRLRC 306


>gi|292492175|ref|YP_003527614.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291580770|gb|ADE15227.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 845

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 11/186 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
              + E     +++   +  D L+GL N +     L           + ++++F D+D F
Sbjct: 390 ARDISEHKAYESQLEYQANYDSLTGLPNRNLLQDRLEHAIAHARRIRQGVAVLFLDLDRF 449

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K +ND+ GH VGD ++  ++++L         V RLGG+EF          + + ++AN 
Sbjct: 450 KMVNDSLGHDVGDALLKAVAERLRGCVRDEDTVSRLGGDEFVLVLEELRGGEMSRLIANK 509

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   ++        G +  I  S GI+      +   T++  AD AL+ AK  GR  +  
Sbjct: 510 ILAALQA--PFALEGQTFRINASVGISLFSRDGKDALTLLKSADTALHWAKAQGRGCIRS 567

Query: 258 FSDIEN 263
           ++   N
Sbjct: 568 YTSEMN 573


>gi|291614972|ref|YP_003525129.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Sideroxydans lithotrophicus ES-1]
 gi|291585084|gb|ADE12742.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Sideroxydans lithotrophicus ES-1]
          Length = 1347

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 88/183 (48%), Gaps = 10/183 (5%)

Query: 87   GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
             S L +L  +      L+  D L+ L N     S L         ++ ++ +++ D+D F
Sbjct: 899  SSDLSQLRQTEAEREHLAHYDPLTDLPNRLLLRSHLTHALAQAKRHHNQVGVLYLDLDRF 958

Query: 140  KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
            K IND+ G+ VGD+++  L+++L +   +   + RLGG+EF       +E +++AI+A  
Sbjct: 959  KNINDSLGYQVGDELLVTLTERLTMHMRSEDLLARLGGDEFLLVLEHINEPEDSAIVARS 1018

Query: 199  LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
            L + +      +     I I  S GI+      +    +I  AD A++ AK  GRN    
Sbjct: 1019 LLETLAQ-PFVLHGEREIFIGASIGISIFPNDGDSAEQLIQHADAAMHQAKTLGRNTYHF 1077

Query: 258  FSD 260
            +++
Sbjct: 1078 YTE 1080


>gi|222110861|ref|YP_002553125.1| PAS/PAC and Chase sensor-containing diguanylate
           cyclase/phosphodiesterase [Acidovorax ebreus TPSY]
 gi|221730305|gb|ACM33125.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Acidovorax ebreus TPSY]
          Length = 1047

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 82/191 (42%), Gaps = 12/191 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           ++     +   +   +  L+  D L+GL N    +  L         +    +++  D+D
Sbjct: 596 VTMVDQSQRKAAEEEVRYLAYNDPLTGLPNRRLLLDRLEQALAMSARHQLCGAVMMLDLD 655

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAIL 195
            FK IN+  G  +GD+++  ++ +L         + R GG+EF      LG+  QEAA  
Sbjct: 656 NFKTINETQGPDMGDRLLREVARRLRDCVPEDETLARHGGDEFVVVLKDLGADPQEAANR 715

Query: 196 ANDLRKII--ENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGR 252
           A ++ + I           G   H  +S GIA     +E    ++ R+D A+Y AK +GR
Sbjct: 716 AEEMGQTILAAIRAPFDIDGQQHHTALSVGIAIFRGVRESADELLKRSDLAMYEAKAAGR 775

Query: 253 NRVVCFSDIEN 263
           + +  F     
Sbjct: 776 DTLRFFDPQMQ 786


>gi|158425538|ref|YP_001526830.1| putative diguanylate cyclase [Azorhizobium caulinodans ORS 571]
 gi|158332427|dbj|BAF89912.1| putative diguanylate cyclase [Azorhizobium caulinodans ORS 571]
          Length = 306

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 76/171 (44%), Gaps = 10/171 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
             RI QLS  D L+G+ N   F  +L           + LS++  DID+FK  ND++GH 
Sbjct: 133 NERIYQLSITDGLTGISNRRRFDEALASLVAQHARSGKPLSVILIDIDHFKAFNDHYGHL 192

Query: 150 VGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            GD  +  ++  +  +         R GGEEFA    G     AA +A  LR  I    I
Sbjct: 193 SGDDCLRQVAAVIASLMRGESDLAARFGGEEFACVLPGLDLAGAASVAERLRSGIAGLGI 252

Query: 209 NISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +     H+T S G    ER   +    ++  AD  LY AK  GRNRV  
Sbjct: 253 PHAKADGGHVTASIGAVCCERPMAQTSHGLLATADALLYRAKGEGRNRVAV 303


>gi|145298745|ref|YP_001141586.1| GGDEF/EAL protein [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142851517|gb|ABO89838.1| GGDEF/EAL protein [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 625

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 6/187 (3%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFK 140
            ++   + +  +       L+  D L+GLLN    + SL +Y     + ++VF D+D FK
Sbjct: 198 LLTMRDITDRKLEELEHRHLAWHDSLTGLLNRYGLMKSLEAYCGMGGRFALVFMDLDNFK 257

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILANDL 199
            +NDN+GH  GD+++  ++ +L  V    + + RLGG+EF A      S   A  +A+ +
Sbjct: 258 LVNDNYGHKAGDRLLERVAGRLKQVCPRDVELARLGGDEFTALVPLAHSSDRAQEVADLM 317

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
              +    + +S  P + I  S GIA      +   T+I RAD A+Y AK+ GR R   F
Sbjct: 318 LSQM-TKPLQLSGVPEVTIGGSIGIAIYPDDADDGDTLITRADMAMYQAKQMGRLRWQRF 376

Query: 259 SDIENNT 265
           +     T
Sbjct: 377 TPSMQQT 383


>gi|330861522|emb|CBX71732.1| hypothetical protein YEW_BX08280 [Yersinia enterocolitica W22703]
          Length = 439

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 72/260 (27%), Positives = 117/260 (45%), Gaps = 32/260 (12%)

Query: 31  FSIFFSIFIAT---VIFIANIFLFYI--GLTPFYGLEYILVENLSL--VIISITISLL-- 81
            +  F   I +    IF++   LF I   L     + + +  N S    + S  I+ L  
Sbjct: 161 LAGLFVCLILSTLVAIFLSRRMLFGIIGSLNRITEVAHNVSRNRSFGQRVPSAQIAELNE 220

Query: 82  LGYISGSILKELF-------ISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEK 128
           L +    +L+EL           + ++  +  D L+GL N + F   L         NE 
Sbjct: 221 LSHDFNGLLEELEVWQKHLTQENDSLAHRAAHDSLTGLANRAYFEGRLSRTLSDCKTNEH 280

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGS 187
           ++++F D D FK+INDN+GH  GD V+  ++D+L  +      V RLGG+EFA       
Sbjct: 281 VAVLFLDGDRFKEINDNYGHAAGDVVLTTIADRLRALLRESDLVARLGGDEFAILLAPIY 340

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYV 246
           +  +  I+AN++ K +    I +  G  I  ++S G+A    H +    ++ RAD+A+Y 
Sbjct: 341 NTDDVLIIANNIIKSM-TQPITLPDGSEIITSLSIGVAIYPDHAQTPDELLQRADEAMYQ 399

Query: 247 AKKSGRNRVVCFSDIENNTC 266
           AKK        F   E  T 
Sbjct: 400 AKKG-------FRPCEQGTA 412


>gi|307822245|ref|ZP_07652477.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307736811|gb|EFO07656.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 742

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + +   + + I + +  D L+GL N   F   L           +KL+++F D+D FK
Sbjct: 295 SDITDKKQTEDIIRKQADFDLLTGLPNRRLFYDRLQQAIKKAKREGQKLAVLFLDLDQFK 354

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            IND  GH +GD+++  ++ +L         + R GG+EF        E      +AN +
Sbjct: 355 DINDTLGHEIGDRLLNEVAQRLDACIRDSDTLARPGGDEFIIILDNLDEFNSIERVANCI 414

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
              +      +    S ++++S GI         +  ++ +ADQA+Y AK+ G  R   F
Sbjct: 415 LGSMA-LPFQL-EHESCYVSLSIGITLFPDDAVVVDELVKKADQAMYAAKRQGGKRFCYF 472

Query: 259 SDIENNTC 266
           +       
Sbjct: 473 APSMQAAA 480


>gi|224369891|ref|YP_002604055.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223692608|gb|ACN15891.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 470

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 12/180 (6%)

Query: 89  ILKELFISY---NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           +  EL  +      + +    D L+G  N  A+   +         Y    S++F D D+
Sbjct: 291 LRTELVQATAHSRELERKINQDPLTGAYNRRAYNQRIEDEMDRFLRYGTLFSLLFIDADH 350

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND +GH +GDK +  +  +   +      + R GGEEF      +    A  +A  
Sbjct: 351 FKNINDTYGHAIGDKCLQEIIKRASKLIRKSDMLARYGGEEFVLVMPETDAANAKNVAEK 410

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVC 257
           +RK IE     +    ++ +T+S G+ +    + +   ++ RAD A+Y AK+ GRNRVV 
Sbjct: 411 IRKTIERIAF-LYKKDAVKVTVSIGVTQVRENDAVPQDVLGRADAAVYQAKQDGRNRVVL 469


>gi|149188686|ref|ZP_01866978.1| GGDEF family protein [Vibrio shilonii AK1]
 gi|148837596|gb|EDL54541.1| GGDEF family protein [Vibrio shilonii AK1]
          Length = 467

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 6/214 (2%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            I   ++ +   Y    + +  + +++      LLL Y   +   EL  +   +  LS  
Sbjct: 242 RILSRWMHIETVYPEHLLPIIGIMIILGVFIYILLLRYTVNTRTNELANANRELKVLSET 301

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL N   F+  L  Y      L+I+  DID FK+IND FGH  GDKVI  +++ + 
Sbjct: 302 DALTGLSNRRYFLEKLEKYRHTGGYLAIIVIDIDDFKKINDTFGHVQGDKVIKSVANSIR 361

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
            +  +   + R+GGEEFA   +    + +  L+ ++ + I   ++++       +T+S G
Sbjct: 362 SLLKSDCVIARIGGEEFALVYVYQGFEYSYQLSQNICRSIR--ELDVKDICCQPVTVSVG 419

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            A         T+   AD+ +YVAKK G+NR V 
Sbjct: 420 CAVYEDASECETLYE-ADRLMYVAKKQGKNRAVV 452


>gi|73666930|ref|YP_302946.1| response regulator PleD [Ehrlichia canis str. Jake]
 gi|72394071|gb|AAZ68348.1| response regulator receiver modulated diguanylate cyclase
           [Ehrlichia canis str. Jake]
          Length = 458

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 55/193 (28%), Positives = 96/193 (49%), Gaps = 17/193 (8%)

Query: 81  LLGYISGSILKELFISYNRIS-----QLSRIDCLSGLLNHSAFI--------SSLGSYNE 127
           L+  ++  + ++ +    RI+      ++  D L+G  N   F          SL    +
Sbjct: 266 LIARVNVQVKRKRYQDALRINVDTSMTMAITDPLTGCYNRRYFDMHFHNIINESLQKE-K 324

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            LS++  DID+FK++ND FGH VGD+++     ++         + R GGEEF      +
Sbjct: 325 NLSLMILDIDHFKEVNDTFGHTVGDELLQQFKKRVSDNIRITDLLARFGGEEFVVILPDT 384

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALY 245
           +   A  +A  +  +I+++    S G  I+ T+S G+ E  +   + I  +I RAD+ LY
Sbjct: 385 TISTAEQIARRILTVIKDTPFKTSIG-DINKTVSIGVVEVQKSDVDNIKQLIDRADKCLY 443

Query: 246 VAKKSGRNRVVCF 258
            AK +GRN+VV +
Sbjct: 444 EAKNTGRNKVVIY 456


>gi|238785892|ref|ZP_04629859.1| hypothetical protein yberc0001_19120 [Yersinia bercovieri ATCC
           43970]
 gi|238713213|gb|EEQ05258.1| hypothetical protein yberc0001_19120 [Yersinia bercovieri ATCC
           43970]
          Length = 467

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 84/186 (45%), Gaps = 11/186 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVF 133
           ++ Y S   + EL  S + +  LS+ D L+G+ N   F        +K       LS++ 
Sbjct: 276 VIWYGSFFDITELKQSESILKALSQTDVLTGVANRRHFDDLYQHIWQKNRIEGGTLSVLM 335

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEA 192
            D D FK  ND +GH +GD  +  + + L          + R GGEEF      S+  +A
Sbjct: 336 IDFDNFKSFNDLYGHAMGDVCLKSIVETLSKSIRGGSDILARYGGEEFIVLLAPSTPADA 395

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKK 249
             +A  +R  IE   I     P   +TIS G+A     +       +   AD+ALY AK 
Sbjct: 396 KAIAERMRHSIEELDIPHGMSPQGRVTISVGVASISAPDEHIAAMDLSDAADKALYRAKA 455

Query: 250 SGRNRV 255
           SG+NR+
Sbjct: 456 SGKNRI 461


>gi|299066447|emb|CBJ37634.1| putative diguanylate cyclase (GGDEF domain) [Ralstonia solanacearum
           CMR15]
          Length = 533

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 108/242 (44%), Gaps = 14/242 (5%)

Query: 27  FMIYFSIFFSIFIATVIFI---ANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
            ++  S    +F+ +++FI   A      +             E L  +    +  +   
Sbjct: 273 MLVTLSHSVPLFVLSIVFIWWFARSISRPLVELASQARLVATPERLERIKTVSSWYIEAH 332

Query: 84  YISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDID 137
            +  ++L+   ++  R+++L   +  D L+GL N     ++L  +   ++  S V  D+D
Sbjct: 333 RLKRALLRGTRLTSTRMARLNLEALTDPLTGLYNRRGVANALRLHAGRHQPFSAVTLDVD 392

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK+IND +GH VGD+V+  L+  +          GR+GGEEF      ++   A   A 
Sbjct: 393 HFKRINDRYGHDVGDQVLRHLAALIREQARHGDITGRIGGEEFILLLPDATPDGAFKTAE 452

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            LR  +E             +T+S G+A        +  ++  +D ALY AK+ GRNR+V
Sbjct: 453 RLRLAVEARPNPTGQ----VVTVSLGVAHYPQSAGEVDAVLKLSDLALYQAKRDGRNRIV 508

Query: 257 CF 258
            +
Sbjct: 509 VY 510


>gi|262172271|ref|ZP_06039949.1| hypothetical protein VII_003098 [Vibrio mimicus MB-451]
 gi|261893347|gb|EEY39333.1| hypothetical protein VII_003098 [Vibrio mimicus MB-451]
          Length = 684

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+GL N   F   L    +    L +++ DID FK IND+ GH +GDKVI  ++ 
Sbjct: 256 AHIDSLTGLYNRHGFTKRLEQCIQNETPLVLLYLDIDNFKNINDSLGHHIGDKVIKEVAA 315

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHIT 219
           +L  +      +G LGG+EF            A +LA+ +  +I  +Q       S  + 
Sbjct: 316 RLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLI--NQPFDLHHFSKRLA 373

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +           ++  AD A+Y AK+ GRNR++ F+D  N   
Sbjct: 374 CSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEA 421


>gi|254423366|ref|ZP_05037084.1| GGDEF domain protein [Synechococcus sp. PCC 7335]
 gi|196190855|gb|EDX85819.1| GGDEF domain protein [Synechococcus sp. PCC 7335]
          Length = 434

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 104/222 (46%), Gaps = 18/222 (8%)

Query: 54  GLTPFYGLEYILVEN---LSLVIISITISL---LLGYISGSILKELFISYNR-ISQLSRI 106
           G + ++G+  + + N    S   ++ T S+   L   I+ SI  +  I+ N+ + +L+  
Sbjct: 185 GASQYWGILALALANDQTWSASAVTDTQSIATELASAIAHSIQHQALITNNQALQKLALS 244

Query: 107 DCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ + N   F          L    + LS++  DID FK  ND FGHP GD+ +  ++
Sbjct: 245 DGLTSIANRRRFDEYIEDEWQRLARDQQPLSLILCDIDQFKLYNDTFGHPAGDRCLIHIA 304

Query: 160 DQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217
             L+ V   +   V R GGEEFA     +    A  +A ++   I   QI + +S    +
Sbjct: 305 RALLQVSQRSADLVARYGGEEFAIILPNTDTHGAWRVAQNIHSSIRGLQIAHAASSNEPY 364

Query: 218 ITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++++ GIA            ++  +D ALY AK+ GRNR   
Sbjct: 365 LSVTLGIATIIPGPDSTPQVLLQASDIALYYAKQQGRNRTYI 406


>gi|171057748|ref|YP_001790097.1| diguanylate cyclase [Leptothrix cholodnii SP-6]
 gi|170775193|gb|ACB33332.1| diguanylate cyclase [Leptothrix cholodnii SP-6]
          Length = 366

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 56/216 (25%), Positives = 95/216 (43%), Gaps = 17/216 (7%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
            + ++  T  +GL   L    + V+            + + +++  +    +S+++  D 
Sbjct: 159 LMQWVTYTALFGLASFLTYQGNQVVRRALAR------AEAEIEQRKLVEAELSRIAITDA 212

Query: 109 LSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+G+ N   F  ++         ++  LS++ FD+D+FK +ND FGH  GD+V+  L+  
Sbjct: 213 LTGVWNRRHFEQTIGAERAKAQRHHTPLSLLLFDVDHFKALNDQFGHQAGDQVLTELARL 272

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +         + R GGEEFA         +A  LA  LR ++     +        +T S
Sbjct: 273 VGRSLRDGDVLARWGGEEFAVILHHCPAADALRLAEKLRGLVAGHAFDRVG----TVTAS 328

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            G+AE    E +     R D ALY AK  GRN V  
Sbjct: 329 FGVAELQPDETLDAWFRRVDLALYAAKSGGRNAVRL 364


>gi|170692754|ref|ZP_02883916.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M]
 gi|170142410|gb|EDT10576.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M]
          Length = 692

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 105/224 (46%), Gaps = 12/224 (5%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
             G+   +    +++   +++++++ +S      S  ++  L     +I +L+ +D L+G
Sbjct: 208 AAGVNAAWLATSVILFTFAILVVTLLLSRFDARTSF-LVGALSKLNGQIVRLATLDTLTG 266

Query: 112 LLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           L N +     +              +I+F D+D FK IND+ GH  GD+V++  + +L+V
Sbjct: 267 LPNRATLTERIERAIYAARRQRSLFAILFMDLDGFKTINDSLGHSAGDQVLSAFAQRLLV 326

Query: 165 VFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                  V RLGG+EF   +   +S  +AA LA  + + + +     +    + +  S G
Sbjct: 327 CVRAGDTVARLGGDEFVVLSENLASRDDAATLAEGVLERMRHD--TWTDSQPLQVMPSIG 384

Query: 224 IAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           IA      + + T++  AD A+Y AK++GR+    F    N   
Sbjct: 385 IALFPEDGDTVDTLLKHADAAMYEAKRAGRSTYRFFERSMNEAA 428


>gi|251800002|ref|YP_003014733.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus sp. JDR-2]
 gi|247547628|gb|ACT04647.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus sp. JDR-2]
          Length = 538

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 61/186 (32%), Positives = 88/186 (47%), Gaps = 13/186 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDI 136
            I    + E      ++  L+  D L+G+ N   FI             +E L+++ FDI
Sbjct: 340 LIVMIDITERVRLQEQLRVLAYHDGLTGIFNRLHFIHLSEALLHQSAEQDEPLALLLFDI 399

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FKQIND +GH VGD+ +  + D    +       GR GGEEF  A  G S +EA   A
Sbjct: 400 DHFKQINDAYGHDVGDRALLHVVDICRQLLRPEDVFGRYGGEEFVVAMPGLSHEEAETAA 459

Query: 197 NDLR-KIIENSQINISSGPSIHITISAGIAERC-----HKEPISTIIYRADQALYVAKKS 250
             +R +I   +    +S P + +T S G+A            I+ ++  AD ALY AK S
Sbjct: 460 QRIRSEIAAQTIAAATSEPPLSVTASFGVAMAGAGCKEAGGGINQLLKAADNALYEAKNS 519

Query: 251 GRNRVV 256
           GRN V 
Sbjct: 520 GRNTVR 525


>gi|152990872|ref|YP_001356594.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
 gi|151422733|dbj|BAF70237.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
          Length = 609

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 9/179 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           +  +    +   S ID ++G  N       +          N   +I+  DID+FK +ND
Sbjct: 425 QTKLLMQELQNQSLIDRMTGAYNRRYLDIFMKKNVPQALRANVPYTIMMLDIDHFKMVND 484

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GDKVI  L D +         V R GGEEF        ++++  +A ++RK   
Sbjct: 485 TYGHDAGDKVIKILVDTIKENIRKSDVVVRFGGEEFLVLLYNCHKEDSLQIAENIRKSFS 544

Query: 205 NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             +I++     IH T+S G+ E           I  AD ALY AK++GRN++V  + +E
Sbjct: 545 KKRIDVGD-EKIHKTVSIGLCEFPKDTKQFWHAIKLADMALYQAKENGRNKIVACNSVE 602


>gi|124515840|gb|EAY57349.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptospirillum rubarum]
          Length = 1144

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 11/183 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDID 137
           ++ + + E     + + + +  D L+GL N +     +     +       +++ FFD+D
Sbjct: 567 LTETDISEKKRLEDILKRQAWSDGLTGLPNRTHLEILMDEAIHRSRLSGKGVAVCFFDLD 626

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND FGH  GD+++  +S +L     +   V RLGG+EF            A +  
Sbjct: 627 GFKPVNDRFGHAFGDRILVEVSHRLQNSVRSGDTVARLGGDEFVLLLEEIDRN--ATIHQ 684

Query: 198 DLRKIIENSQINISS-GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
            L +I+E+      + G  + +T S G+        P   ++  AD ALY AK+ GRNR 
Sbjct: 685 LLARILESIARPFEAPGTPLSLTASIGVTIYPEDLSPSDVLLRHADHALYQAKEDGRNRF 744

Query: 256 VCF 258
           V F
Sbjct: 745 VLF 747


>gi|54026479|ref|YP_120721.1| hypothetical protein nfa45060 [Nocardia farcinica IFM 10152]
 gi|54017987|dbj|BAD59357.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 571

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 62/214 (28%), Positives = 98/214 (45%), Gaps = 12/214 (5%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG--SILKELFISYNRISQ 102
           +  + L    L P  G     V+   +V+ ++ + LL+G +      ++    S  R   
Sbjct: 266 VIAVALIVAALVPALGTRLGTVDR--VVVATLFVLLLIGVLVRGERAVQRSARSERRAQY 323

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            +  D L+GLLN +A + +L           LS++F D+D FK++ND++GH VGD++IA 
Sbjct: 324 QADHDMLTGLLNRTALLRTLARERADWRAGPLSLLFLDLDGFKRVNDSYGHAVGDELIAN 383

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            + ++  V G      R GG+EF         +EA  LA  L          +S G  + 
Sbjct: 384 AAARIRRVAGRIPVCARYGGDEFVVLTP-CGVREAVTLAERLLDAF-GRPFELSVGA-VP 440

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           +T S GI        I  +I  AD A+Y AK  G
Sbjct: 441 VTASVGITSADGDADIFDLIRDADAAMYRAKDQG 474


>gi|108803997|ref|YP_643934.1| diguanylate cyclase/phosphodiesterase [Rubrobacter xylanophilus DSM
           9941]
 gi|108765240|gb|ABG04122.1| diguanylate cyclase/phosphodiesterase [Rubrobacter xylanophilus DSM
           9941]
          Length = 673

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 6/168 (3%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           S       +  D L+GL N + F   LG   S + + +++F D+D FK +ND+ GH VGD
Sbjct: 213 SEELFRHQALHDHLTGLPNRALFRERLGEILSRSGEAAVLFVDLDNFKVVNDSLGHEVGD 272

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +++  +S +L           RLGG+EF     G+  +    +A  L +  E  +     
Sbjct: 273 RLLVEVSRRLKGCLRATDMAARLGGDEFTVLLDGAGVRCPEEVARRLLR--ELGEPFEVE 330

Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           G ++ +  S GIA           ++  AD ALY AK  G+ R   F 
Sbjct: 331 GHTLFVEASVGIATGAAGLGRPDDLLRAADVALYRAKAEGKGRYHVFD 378


>gi|312135310|ref|YP_004002648.1| diguanylate cyclase [Caldicellulosiruptor owensensis OL]
 gi|311775361|gb|ADQ04848.1| diguanylate cyclase [Caldicellulosiruptor owensensis OL]
          Length = 557

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 83/185 (44%), Gaps = 9/185 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQ 141
           SI  E    Y ++  ++ +D L+G  N       L            +SI  FD+D FK+
Sbjct: 373 SIALENSSLYQQMRSMAMVDGLTGAFNRIYLYEFLEKEVQTSGGRYPISIALFDVDNFKK 432

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH  GDKV+  +             V R GGEEF          EA  +   +R+
Sbjct: 433 LNDTYGHLFGDKVLQTIVRIAREKVRKGDIVARYGGEEFIIVFSHLESSEAYKVVERIRR 492

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF-S 259
            IE+  I   +     +T+S GIA    H + +  ++  AD A+Y AK SG+N  V +  
Sbjct: 493 AIESETIE-DNLVQTRVTVSFGIASYPSHADNVKDLVKCADIAMYRAKSSGKNCTVIYHQ 551

Query: 260 DIENN 264
           ++E  
Sbjct: 552 ELEMK 556


>gi|152992060|ref|YP_001357781.1| hypothetical protein SUN_0464 [Sulfurovum sp. NBC37-1]
 gi|151423921|dbj|BAF71424.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 607

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 12/191 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           I   +  +   ++++ + L+  D L+GL N       L         +++  +++F D+D
Sbjct: 413 IFSDVTHQRKDAHDQ-AYLATHDPLTGLSNRLVLNDRLEHAIEHAKRFDKCFALIFCDLD 471

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILA 196
            FK IND +GH VGDKV+  ++D +         + R GG+EF        E +    + 
Sbjct: 472 NFKPINDTYGHSVGDKVLKHIADIMKSTLRKNDTICRYGGDEFVILIEELKEFESLETIL 531

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
           + +R +   +Q    +G  +++ IS G A   +       I+  ADQA+Y AKK G+N +
Sbjct: 532 DKIRTL--TNQSFTINGIELNVGISIGAAVYPNDARTSEEILSVADQAMYEAKKEGKNSI 589

Query: 256 VCFSDIENNTC 266
             F   EN  C
Sbjct: 590 SFFGSYENLVC 600


>gi|300312093|ref|YP_003776185.1| hypothetical protein Hsero_2782 [Herbaspirillum seropedicae SmR1]
 gi|300074878|gb|ADJ64277.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 601

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 12/186 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           L      +L  L +    +   +  D L+GL N       +             + ++F 
Sbjct: 388 LTMAFNGLLARLKLHQAELQHQAHHDVLTGLPNRMMLAERMQAALTHACRERNGVGLLFL 447

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS---EQE 191
           D+D FK IND  GH  GD+V+  ++ +L  V      + R+GG+EF           EQ 
Sbjct: 448 DLDGFKPINDTLGHKAGDQVLQEITRRLRQVARHGDTLARVGGDEFVLLVTDLRLPFEQG 507

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A  LA    K +  S+          + +S GIA         +++  ADQA+Y AK +G
Sbjct: 508 AQALAEKCIKTV--SEPICLDQRQYRLGVSVGIAVCDGSCDADSLLQAADQAMYAAKANG 565

Query: 252 RNRVVC 257
           R   V 
Sbjct: 566 RGCYVI 571


>gi|323526658|ref|YP_004228811.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Burkholderia sp. CCGE1001]
 gi|323383660|gb|ADX55751.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia sp. CCGE1001]
          Length = 774

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 15/194 (7%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----------LSIV 132
            IS + +  +  +  ++  L+  D L+GL N +     + S               ++++
Sbjct: 320 LISFTDIGPVREAQRQLKFLATRDSLTGLYNRAYLTERMNSLFAPGGPDGTGELASVAVL 379

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F D+D FK++ND  GH  GD ++  ++ +L    G    + R+GG+EF          E 
Sbjct: 380 FVDLDGFKKVNDTAGHEAGDALLKSVAGRLAGCVGPDDTLARVGGDEFVIVVSACDCSE- 438

Query: 193 AILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250
             L    R I++   +  + +    ++  S GI+      +   T++  AD A+Y AK+ 
Sbjct: 439 -RLIALARHILDEIAVPFAVADNEYYLGASIGISRFPDDGQDAPTLMRNADSAMYHAKQR 497

Query: 251 GRNRVVCFSDIENN 264
           GRN    F+   N 
Sbjct: 498 GRNNFQFFTAELNQ 511


>gi|307295045|ref|ZP_07574887.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingobium chlorophenolicum L-1]
 gi|306879519|gb|EFN10737.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingobium chlorophenolicum L-1]
          Length = 868

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 56/188 (29%), Positives = 91/188 (48%), Gaps = 13/188 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           SG+ L E+  S   +++L++ D L+GL N    + SL              +++  D+D 
Sbjct: 326 SGTDLTEMRRSQAEVTRLAQYDSLTGLANRVQMMRSLEQAVAGKRGQPRDCTLMMLDLDR 385

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND  GHP GD ++  +S+++  V G    VGR GG+EF     G  ++   I+ + 
Sbjct: 386 FKIVNDTLGHPAGDALLRQVSERIQRVVGDKGLVGRQGGDEFKILLPGRPDK---IMLDH 442

Query: 199 LRKII--ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           L + I  + SQ  +  G ++ I +S GI+           +I  AD ALY AK  GR   
Sbjct: 443 LARAIITDVSQPYLVEGTAVVIGVSIGISFCPQDGVTAEELIRNADLALYAAKGGGRGVY 502

Query: 256 VCFSDIEN 263
             +S   +
Sbjct: 503 RFYSPEMH 510


>gi|298505985|gb|ADI84708.1| sensor diguanylate cyclase, GAF domain-containing [Geobacter
           sulfurreducens KN400]
          Length = 352

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 58/188 (30%), Positives = 94/188 (50%), Gaps = 11/188 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129
            +S+L  + + +I      +  R+  ++  D L+GL NH  F       ++    Y + L
Sbjct: 159 LLSVLASFAAMAIDNAQLHARTRL--MAITDSLTGLYNHRYFQQIFSRELNRAKRYEKPL 216

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +I+  D+D FK+ ND +GHP GDKV+A + D L     +  F  R GGEEF      +  
Sbjct: 217 AIIMLDVDDFKRFNDTYGHPHGDKVLAAMGDFLGEALRSSDFAFRYGGEEFIVLLPETEF 276

Query: 190 QEAAILANDLRKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVA 247
             A  +A  LR+++E   +++  G     +T+S G+A      E    ++ R D  LY A
Sbjct: 277 DSALQVAERLRELVERRSLDVLKGLAPQGVTVSVGVASFPRDGESRGDMLKRVDDLLYRA 336

Query: 248 KKSGRNRV 255
           K+ G+NRV
Sbjct: 337 KEFGKNRV 344


>gi|238762278|ref|ZP_04623250.1| Diguanylate cyclase with PAS/PAC sensor [Yersinia kristensenii ATCC
           33638]
 gi|238699625|gb|EEP92370.1| Diguanylate cyclase with PAS/PAC sensor [Yersinia kristensenii ATCC
           33638]
          Length = 693

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 8/179 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDI 136
             +    +         +   +  D L+GL+N       L     +L       + + D+
Sbjct: 511 AVVVFQDVTRARHEQRELQYQANHDMLTGLINRRRLEERLNQAITQLGKDEQHILCYVDL 570

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK +ND+ GH  GD V+  ++  +         V RLGG+EFA   L    + A  + 
Sbjct: 571 DYFKDVNDSAGHEAGDMVLRMVAQTMQQAVRDNDIVARLGGDEFAIVLLNCPNKPATDVL 630

Query: 197 NDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +   I + Q +   G S   T S G ++     E  +  + +AD A Y AK SGRNR
Sbjct: 631 EKVVADIASIQFHWH-GQSYSFTASLGAVSLTQQTETAAQAMRQADIACYAAKHSGRNR 688


>gi|192360825|ref|YP_001981342.1| Diguanylate cyclase/phosphodiesterase [Cellvibrio japonicus
           Ueda107]
 gi|190686990|gb|ACE84668.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Cellvibrio
           japonicus Ueda107]
          Length = 940

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 102/242 (42%), Gaps = 20/242 (8%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL---LGYISGSI-----LKEL 93
            +F   ++   +    + G  +   +N  L + S+TIS +    G I+  +     +  +
Sbjct: 428 AVFFERLWHSLVNEGAWCGEIWNKRKNGDLYVASMTISAVKDSRGQITHFVDLFNDITHI 487

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNF 146
                ++  ++  D L+ L N       +             L++++ D+D FK IND +
Sbjct: 488 KEHQRQLEHIAHYDALTHLPNRVLLADRMKQALLHSQRSGLSLAVMYIDLDGFKAINDQY 547

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIEN 205
           GH +GD+++  +S +   V      + R+GG+EF        +  A   + + L     +
Sbjct: 548 GHDLGDQLLVAISSRFKSVLRESDTLARIGGDEFVVVLNELEQPAAYQPVLDRLLATAAD 607

Query: 206 SQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             I      ++ IT S GI            +I  ADQA+Y+AK+ G+N    F D++ +
Sbjct: 608 PLI--LRDQALRITASIGITLYPSDTADAEQLIRHADQAMYLAKQRGKNGWHLF-DVDRD 664

Query: 265 TC 266
             
Sbjct: 665 VA 666


>gi|88859173|ref|ZP_01133814.1| sensory box/GGDEF domain protein [Pseudoalteromonas tunicata D2]
 gi|88819399|gb|EAR29213.1| sensory box/GGDEF domain protein [Pseudoalteromonas tunicata D2]
          Length = 426

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 93/178 (52%), Gaps = 8/178 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            +   E+     +  +L+ ID L+ L N  +F       ++    +  K  I+  D+DYF
Sbjct: 247 STDTTEIIKLKEQYRRLASIDELTQLANRRSFTTQGNSELARFLRHGCKFVILLLDLDYF 306

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND+FGH VGD+V+  +S+  V       FV R+GGEEFA     +  + A ++A  +
Sbjct: 307 KNINDSFGHAVGDEVLIAVSNCFVDTVRELDFVSRIGGEEFAIILPKTDVKAAYVIAERI 366

Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R  I+   +N       +++IS G++  +     +  I+ RAD+ALY AK +GR+ V+
Sbjct: 367 RNNIKKIIVNTPFCQVKNLSISIGLSIVKAEDSELDHILLRADKALYEAKSAGRDCVI 424


>gi|134291815|ref|YP_001115584.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
 gi|134135004|gb|ABO59329.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
          Length = 506

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 97/196 (49%), Gaps = 13/196 (6%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-- 129
           VI ++  +++  ++    L++       ++ L+R D L+GL N  A  ++L    ++L  
Sbjct: 302 VIGALFCAVM--WLLAFALRDNLRKQTLLTDLTRTDPLTGLHNRRALDAALADEWQRLQR 359

Query: 130 ------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAA 182
                 S++F D D+FKQ ND +GH  GD  + FL++ +            R GGEEF A
Sbjct: 360 GNDGSLSMLFIDADHFKQYNDRYGHAQGDTALRFLAECIRAHTRRRGDLAARYGGEEFVA 419

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRA 240
               + E  AA +A  +R  +E + ++         T+S G A   R H + +  + + A
Sbjct: 420 VLPDTDESGAATVAEAIRGAVERNCLDGFDATMPAFTVSIGCATAHRGHPKSVQALSHHA 479

Query: 241 DQALYVAKKSGRNRVV 256
           D ALY AK+ GRNRV 
Sbjct: 480 DLALYTAKRQGRNRVC 495


>gi|327440463|dbj|BAK16828.1| response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Solibacillus silvestris StLB046]
          Length = 545

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 61/193 (31%), Positives = 93/193 (48%), Gaps = 16/193 (8%)

Query: 80  LLLGYISGSILKELFISYNRISQLS-RIDCLSGLLNHSA-------FISSLGSYNEKLSI 131
           +L+ Y+   ++      + +  +LS   D L+ L N           +       E+ SI
Sbjct: 220 ILISYVRNRLV------FKQALELSIMTDELTQLYNRKYMNTQLEFLMEQFEKRGEQFSI 273

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              DID+FK IND +GH VGD+V+   S+ ++        + R GGEEF      +S+  
Sbjct: 274 AIADIDFFKNINDTYGHIVGDEVLKGFSNLIMSAKREEDILFRFGGEEFVLVMPNTSKNT 333

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250
           A  +   LR I+        +  S +IT S+GIAE  H+      ++ +ADQALY AK S
Sbjct: 334 AFSIMERLRTIVGKQPFK-GNEQSFNITFSSGIAEINHQNKHPKALVEQADQALYKAKTS 392

Query: 251 GRNRVVCFSDIEN 263
           GRN+ V F+  E 
Sbjct: 393 GRNQTVLFTKEEQ 405


>gi|302558218|ref|ZP_07310560.1| sensory box/GGDEF domain/EAL domain-containing protein
           [Streptomyces griseoflavus Tu4000]
 gi|302475836|gb|EFL38929.1| sensory box/GGDEF domain/EAL domain-containing protein
           [Streptomyces griseoflavus Tu4000]
          Length = 622

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 79/199 (39%), Gaps = 21/199 (10%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN------------EKLSIV 132
            +   + E      ++   +  D L+ L N + F   +                   +++
Sbjct: 122 FNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTRRVQQALSGRRASDRGAALRGTAVL 181

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS---- 188
           F D+D FK +ND  GH  GD+++   + +L           RLGG+EFAA   G      
Sbjct: 182 FIDLDGFKGVNDTIGHQAGDELLVQAARRLQDAVRKGDTASRLGGDEFAALITGDGVRDR 241

Query: 189 ---EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
              E+    LAN LR  +  SQ  +  G  + +  S G+A          ++  AD A+Y
Sbjct: 242 DARERHILELANRLRATL--SQPYLIDGNDVRVNASIGVAFAEPGLGAGELLRNADLAMY 299

Query: 246 VAKKSGRNRVVCFSDIENN 264
            AK +G+ RV  +      
Sbjct: 300 RAKAAGKGRVELYKPQMQQ 318


>gi|256821347|ref|YP_003145310.1| diguanylate cyclase [Kangiella koreensis DSM 16069]
 gi|256794886|gb|ACV25542.1| diguanylate cyclase [Kangiella koreensis DSM 16069]
          Length = 688

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 60/191 (31%), Positives = 99/191 (51%), Gaps = 12/191 (6%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------ 125
           +I+   ++++L + S   L+++  S  +   L+  D L+GL N      +L         
Sbjct: 499 IILGSVLTVVLIWFS---LRQVANS-RKFRLLAHTDSLTGLANRRQIERALKREMESSNQ 554

Query: 126 -NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
             + LSI+ +DID+FK +ND  GH VGD V+  LS+    +      +GR GGEEF A  
Sbjct: 555 SGKPLSILMYDIDHFKVVNDIHGHSVGDVVLTNLSNFSKELLRDNDVLGRTGGEEFLAVL 614

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             ++  +A  +A  L++ ++  Q        ++ TIS G+ E    E +   + R D+AL
Sbjct: 615 PNANLDQAIQVAKRLQQEVDLKQYTEIES-ELNATISVGVTEYKQGEHMDEFLRRVDEAL 673

Query: 245 YVAKKSGRNRV 255
           Y AK++GRNRV
Sbjct: 674 YQAKENGRNRV 684


>gi|149375341|ref|ZP_01893112.1| serine/threonine kinase with two-component sensor domain
            [Marinobacter algicola DG893]
 gi|149360377|gb|EDM48830.1| serine/threonine kinase with two-component sensor domain
            [Marinobacter algicola DG893]
          Length = 1684

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 11/168 (6%)

Query: 101  SQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
             +L+  D L+G+ N  +  +        L    + LS+V  D+D+FK  NDN+GH +GD+
Sbjct: 1513 QRLADRDGLTGVANRRSGDAYLKDTWLRLRRQPQPLSVVMLDVDHFKHFNDNYGHQMGDE 1572

Query: 154  VIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +  +++ L   +  +   V R GGEEF      + E  A  +A + R  IE   I    
Sbjct: 1573 CLIRVAETLQAQLQRSTDMVARYGGEEFILILPNTDENGAIQVAENARVAIEALDIRHDH 1632

Query: 213  G-PSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                  IT+S G A      K  +  +++ AD ALY AK+SGRNR+  
Sbjct: 1633 STARDCITVSVGCATIVPDDKSSLEELVFAADAALYKAKESGRNRIQA 1680


>gi|291571958|dbj|BAI94230.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 1091

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 16/198 (8%)

Query: 83  GYISGSI-----LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLS 130
           GYI+  I     + +   +   ++  +  D L+ L N +     L          +  ++
Sbjct: 639 GYITHFIAVKEDITQQKHNEEILAHQANYDALTDLPNRTLVFERLRQAIIQAQVNHSNVA 698

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSE 189
           ++F D+D+FK IND  GH +GD ++     +L     T   VGRLGG+EF          
Sbjct: 699 VMFIDLDHFKNINDTLGHELGDFLLKEAGMRLKGCLRTTDTVGRLGGDEFLVIIPNLDDL 758

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAK 248
            +A  +A  +  ++   +     G    I+ S GIA         ST++  AD  +Y AK
Sbjct: 759 IQAEYIATQVLGVL--GEPFNLCGEEAFISASIGIASYPQDGNNASTLVRNADTGMYAAK 816

Query: 249 KSGRNRVVCFSDIENNTC 266
           + GRN    F+   N+  
Sbjct: 817 QEGRNVFAFFTQNMNDEA 834


>gi|258405957|ref|YP_003198699.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692]
 gi|257798184|gb|ACV69121.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692]
          Length = 544

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 65/208 (31%), Positives = 90/208 (43%), Gaps = 16/208 (7%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           P    EYI  +NL  VI+   +  LL       L++  + Y      S  D L+G+ N  
Sbjct: 340 PPTTWEYI-QQNLPFVILVGAVVALLCLSLALALRQRRLMY----WASITDSLTGIFNRE 394

Query: 117 AFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
                            E  + +  DIDYFK IND  GH VGD+V+   +  L       
Sbjct: 395 RLDEDMGLLIHRCHERGEGFACILVDIDYFKTINDTKGHTVGDQVLVEFARLLAQQSRGT 454

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
             V R GGEEF     G+  + A+ LA  +R  I  ++          ++ S G+AE   
Sbjct: 455 DSVFRYGGEEFLMVLPGADLRGASQLAERVRAAIGGTRF----AGETRLSASFGVAEYQL 510

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVC 257
            +    ++ RAD ALY AK  GRNRVV 
Sbjct: 511 SDNWEGLLSRADTALYAAKAQGRNRVVV 538


>gi|330830935|ref|YP_004393887.1| GGDEF/EAL domain-containing protein [Aeromonas veronii B565]
 gi|328806071|gb|AEB51270.1| GGDEF/EAL domain protein [Aeromonas veronii B565]
          Length = 814

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 11/187 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           I+ S +  +      ++ L+  D L+ L N       L           ++L ++F D+D
Sbjct: 368 IALSDISAIRKVEAELNHLAYHDPLTELGNRHLLQERLALELKTAQLNRKRLGLLFIDLD 427

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILA 196
            FK IND+ GH VGD+++  L++++           RLGG+EF        E  E A LA
Sbjct: 428 GFKLINDSLGHGVGDELLKRLAERIRGCLQHNDLATRLGGDEFLVLIPYLEEPDELATLA 487

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
           N L  ++   +    +   + I+ S GIA    H +   T++  AD A+Y AK  GRN  
Sbjct: 488 NTLLTVLR--EPVELAHELVAISASIGIAIYPDHADSPETLVSAADSAMYEAKSQGRNGF 545

Query: 256 VCFSDIE 262
             ++   
Sbjct: 546 QFYTPCM 552


>gi|224824140|ref|ZP_03697248.1| diguanylate cyclase [Lutiella nitroferrum 2002]
 gi|224603559|gb|EEG09734.1| diguanylate cyclase [Lutiella nitroferrum 2002]
          Length = 574

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 105/239 (43%), Gaps = 25/239 (10%)

Query: 37  IFIATVIFIANIFLFYIGLT-PFYGLEYILVE---NLSLVIISITISLLLGYISG---SI 89
           +   +V+ I    +F   LT P   L +         +L  + +T +  +G ++     +
Sbjct: 328 VLAFSVLSIVLAVVFSRALTRPLQMLTHAATSFQTRHALEALPVTRTDEIGVLARCFDQM 387

Query: 90  LKELF-------ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFD 135
            KEL         +   +  L+  D L+GL N   F       I ++    ++L+++F D
Sbjct: 388 RKELKSHMEKMSQNQQELRHLAHHDSLTGLPNRMQFFHQIECAIDAVAESGQQLAVLFID 447

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAI 194
           +D+FKQIND  GH VGD+V+  ++ +L         V RLGG+EF     G +   E   
Sbjct: 448 LDHFKQINDQMGHAVGDQVLIVVAQRLRSALRGEDVVARLGGDEFIVLIKGPAIAAEVPA 507

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGR 252
           +A  +   +    +    G  + +  S GI+           ++ RAD A+Y AK SGR
Sbjct: 508 IAAKILSTLNEDIMTH--GHRLQVCASIGISLFPDDGVTAEELVLRADSAMYKAKVSGR 564


>gi|120553102|ref|YP_957453.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120322951|gb|ABM17266.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 368

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 67/260 (25%), Positives = 120/260 (46%), Gaps = 15/260 (5%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIA--TVIFIANIFLFYIGLTPFYGLEYIL 65
           F+ I L  E ++ +F    +++   +   + +     + ++  F+   G+  ++ L  + 
Sbjct: 94  FIVIMLLPEASIAAF---VWVLMMPVLAYLLLGKHEGMILSVPFMLVGGVVYYFFLGEVG 150

Query: 66  VENLSLVIISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
             +  + ++++ +   L  +   + +     +  R+  +++ D L+GL N S F S+L  
Sbjct: 151 SAHRMIDLLNMFLCGALMQVFMHMYEVRREEAEQRLVDMAQTDALTGLANRSNFQSTLAR 210

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                       ++V  DID+FK +ND  GH  GD V+  +   L     T  FVGRLGG
Sbjct: 211 TIAECERSGTGFALVIMDIDHFKLVNDTLGHDAGDYVLRHIGQSLTERLRTTDFVGRLGG 270

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTI 236
           EEF          +A  L ++LR+ I   ++       I +T S GIA+   H     T+
Sbjct: 271 EEFGLILRDVKPGDAFELMDELRERIARRELKYGE-AGIRVTASFGIAQWPDHGREAETL 329

Query: 237 IYRADQALYVAKKSGRNRVV 256
              AD+ LY  K++GRNRV 
Sbjct: 330 FCVADRCLYSGKRAGRNRVA 349


>gi|110834123|ref|YP_692982.1| GGDEF domain-containing protein [Alcanivorax borkumensis SK2]
 gi|110647234|emb|CAL16710.1| GGDEF domain protein [Alcanivorax borkumensis SK2]
          Length = 364

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 76/174 (43%), Gaps = 9/174 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           + L  ++NR+S ++  D L+GL N   F+  L          N  L +   D+D+FKQ+N
Sbjct: 191 RRLHEAHNRLSAIAVRDDLTGLYNRRHFLERLEEEMSRANRENNPLHLAIIDLDHFKQVN 250

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD V+   +    +       + R GGEEF      +S Q        LR   
Sbjct: 251 DTYGHHAGDDVLHRFAQLAAMGLRKSDLLARYGGEEFVVLFPHTSTQACQAAMERLRNRF 310

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                + S    +    SAG+      E     I RAD+ALY AK  GRNR+  
Sbjct: 311 AQQHYSFSG--DLRSKFSAGLTPYQPGESAEEFIKRADRALYQAKDLGRNRIQL 362


>gi|77164365|ref|YP_342890.1| two component diguanylate cyclase [Nitrosococcus oceani ATCC 19707]
 gi|254433277|ref|ZP_05046785.1| GGDEF domain protein [Nitrosococcus oceani AFC27]
 gi|76882679|gb|ABA57360.1| response regulator receiver modulated diguanylate cyclase
           [Nitrosococcus oceani ATCC 19707]
 gi|207089610|gb|EDZ66881.1| GGDEF domain protein [Nitrosococcus oceani AFC27]
          Length = 327

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 12/178 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
            L  +  ++ QL+ +D L+G+ N   F  ++    ++       LS++  DID FK  ND
Sbjct: 147 RLEAANEQLRQLTSLDDLTGIANRRQFEVTIHQEFQRAMRNKTVLSLIMIDIDNFKVYND 206

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  L  V       + R GGEEFA     +  + A+ +A  LR+ +
Sbjct: 207 IYGHQTGDSCLRRVAAALDSVLKRPNDLLARYGGEEFAVILPETGSKGASNIAESLRQAV 266

Query: 204 ENSQINIS--SGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           E  +I  S  S  ++ +T+S G+A       +  + +I  ADQALY +K +GRN+V  
Sbjct: 267 EILKIPHSYASQNNLRVTVSLGVATLIPQRGDEPTKLISIADQALYQSKHAGRNQVSV 324


>gi|115360028|ref|YP_777166.1| RNase II stability modulator [Burkholderia ambifaria AMMD]
 gi|115285316|gb|ABI90832.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria AMMD]
          Length = 667

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 93/192 (48%), Gaps = 19/192 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDID 137
           SG  + E   +  R+++L+  D L+GL N  A    +G+           ++ I+F D+D
Sbjct: 218 SGIDVTEERNAQQRLTELANTDMLTGLPNRHAISERIGAALAADRTDMRGQVGILFLDLD 277

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAA 193
            FK++ND++GH  GD+++  +S  +     +   + RLGG+EF       +    E  + 
Sbjct: 278 NFKRVNDHYGHITGDRLLQDVSTIISGCLPSGATLARLGGDEFLVLFEHGTRPLLEATSQ 337

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
           I+   LR  I    +       I+ + S GIA    H + + T+I  AD A+YVAK+ G+
Sbjct: 338 IILERLRTPIHLGLM------EIYTSCSIGIAMYPQHGDSLETLIRSADTAMYVAKEEGK 391

Query: 253 NRVVCFSDIENN 264
           +    FS   N 
Sbjct: 392 HTYRVFSLEMNQ 403


>gi|319760758|ref|YP_004124695.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|330822678|ref|YP_004385981.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Alicycliphilus denitrificans
           K601]
 gi|317115319|gb|ADU97807.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|329308050|gb|AEB82465.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Alicycliphilus denitrificans K601]
          Length = 1206

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 14/186 (7%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
                  I +L+  D L+GL N + F+  +G         ++  +++F D+D FK +ND 
Sbjct: 757 RKSHEREIQRLAFFDPLTGLPNRAQFMQRMGHALATARRQHQGGALLFIDLDNFKTLNDT 816

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD+++  ++ +L     +   V RLGG+EF       +   AA LA    K+ E 
Sbjct: 817 LGHDQGDRLLQLVAQRLSTCVRSVDTVARLGGDEFVVLLEQLTAH-AATLAEHANKVGEK 875

Query: 206 S-----QINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                      +G     T S GIA        +  ++ +AD A+Y AK +GR+ +  F 
Sbjct: 876 ILNVLCVPYALAGHQYRSTPSIGIALFDDTPTSMGDLLKQADLAMYQAKNAGRSTLRFFD 935

Query: 260 DIENNT 265
                 
Sbjct: 936 PGMQRA 941


>gi|254459366|ref|ZP_05072787.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207083979|gb|EDZ61270.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 666

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 63/208 (30%), Positives = 107/208 (51%), Gaps = 12/208 (5%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           ++P +  +  ++E  S +I  +T+  +L   +  +  E+      +  L+  D L+ + N
Sbjct: 462 ISPIFDSKNNIIEYDS-IITDVTLKKVLEEFNKKLEIEVKERTIVLENLAITDKLTNIYN 520

Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
                  L         Y++  SI+  DID+FK++ND +GH VGD+V+  +S  +  +  
Sbjct: 521 RLRLDQELSYNYKNYLRYDKIYSIILIDIDFFKKVNDTYGHQVGDEVLQKVSFIMKELIR 580

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
           +   +GR GGEEF   +  +    A  L  ++R  IEN+  +  +     +TISAGIA+ 
Sbjct: 581 STDILGRWGGEEFMIISPNTDLNGAYTLTQNIRSNIENTIFDSVN----KVTISAGIAQI 636

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRV 255
                  +II +AD+ALY AK +GRNRV
Sbjct: 637 NSNLDEKSIITKADEALYRAKDNGRNRV 664


>gi|90419194|ref|ZP_01227104.1| diguanylate cyclase family [Aurantimonas manganoxydans SI85-9A1]
 gi|90336131|gb|EAS49872.1| diguanylate cyclase family [Aurantimonas manganoxydans SI85-9A1]
          Length = 273

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 71/250 (28%), Positives = 121/250 (48%), Gaps = 13/250 (5%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL 69
           S+W   E    S+      +   +   IF+  +     +F    G   ++ ++   +E  
Sbjct: 21  SVWRLAEAEERSWLDTALAVALCLVSGIFLVRLPLFPMLF---DGTASYHAVKTSGLETT 77

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129
            L +  +   L++  +   I+  +   Y R    S  D ++GLLN   F  SL    ++ 
Sbjct: 78  LLTLSGLVTPLVVFLLLARIISGVITDYRR---RSERDAMTGLLNRRGFDQSLTRTLKRG 134

Query: 130 -SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            +++  DID+FKQ+ND++GH VGD +I    D +     +    GR+GGEEFA      S
Sbjct: 135 GAVILCDIDHFKQVNDSYGHAVGDTIIRAFGDLI---GRSGYRAGRIGGEEFALILPDCS 191

Query: 189 EQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
            ++AA +A  LR    +++   +++G    I+ S GIA     + +  ++  AD+ALY A
Sbjct: 192 ARQAARVAETLRLTFYHTEHEALAAGH--RISASFGIAGFAPADTMDAVLLAADRALYRA 249

Query: 248 KKSGRNRVVC 257
           K +GRNRVV 
Sbjct: 250 KDNGRNRVVI 259


>gi|27367939|ref|NP_763466.1| sensor histidine kinase [Vibrio vulnificus CMCP6]
 gi|27359512|gb|AAO08456.1|AE016813_208 Sensor histidine kinase [Vibrio vulnificus CMCP6]
          Length = 387

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 111/242 (45%), Gaps = 15/242 (6%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV--IISITISLLLGYIS 86
           +   +  + F+   +++  +F  Y+       ++++   ++  +  +  I + L LG+  
Sbjct: 152 LAIGLLLAAFVTLALWM--LFRTYVTYMSSQIVDFMFASSIHQLSFLALIMLILTLGFTF 209

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139
             ++    I+   I Q S  D L+ + N  A                 +LSI+  D+D+F
Sbjct: 210 PWMINARLITN--IYQTSLRDTLTNIYNRRAMEEMIPRELSRASRLGAELSIIILDLDHF 267

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND +GH VGD+ ++ +   L           R+GGEEF      +  + A ++A  L
Sbjct: 268 KRINDQYGHQVGDQTLSGIGQLLTSQLRKQDISFRIGGEEFLVVLPDTPIESAVLVAEKL 327

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           R+ I  ++       +   T S G+A+    +    ++ RAD ALY+AK  GRNRV   S
Sbjct: 328 RQKIAETRFAQKQRETW--TASFGVAQLITGDDWDALMKRADAALYLAKHKGRNRVCEVS 385

Query: 260 DI 261
           D+
Sbjct: 386 DV 387


>gi|295699665|ref|YP_003607558.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1002]
 gi|295438878|gb|ADG18047.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1002]
          Length = 667

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 11/187 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYF 139
           SG+ + E  ++  R+ + +  D L+GL N +A    +       +  E + ++F D+D F
Sbjct: 220 SGTDITEQRLAQERLIEQATTDPLTGLANRNAIQERIQIAIEQAAPGETVGVLFLDLDNF 279

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND++GH  GD++I  +SD +         + RLGG+EF   A   S      +A  +
Sbjct: 280 KKVNDHYGHVFGDRLICDVSDAIRNCLNPGDSLARLGGDEFIVLAAKGSAHGLEDIAQRI 339

Query: 200 RKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
              ++  ++  + G   ++   S GIA    H E + ++I  AD A+YVAK  G+     
Sbjct: 340 ---LDRMRMPFAVGLVEVYTGCSIGIARWPEHGETLESLIRSADTAMYVAKDEGKRTHRV 396

Query: 258 FSDIENN 264
           FS   N 
Sbjct: 397 FSPDMNR 403


>gi|119478224|ref|ZP_01618280.1| hypothetical protein GP2143_06779 [marine gamma proteobacterium
           HTCC2143]
 gi|119448733|gb|EAW29977.1| hypothetical protein GP2143_06779 [marine gamma proteobacterium
           HTCC2143]
          Length = 760

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 51/201 (25%), Positives = 88/201 (43%), Gaps = 17/201 (8%)

Query: 81  LLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIV 132
           LLGY S  + + +      +I+  +  D ++ L N   F   L     ++       +++
Sbjct: 305 LLGYTSFVTDISKRLEHEQQITHQAFYDAVTDLPNRRYFYERLRQEMSRVQRGPNHSAVL 364

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS----- 187
           F D+D+FK IND+ GH +GD+++   + +L         + RLGG+EF            
Sbjct: 365 FIDLDHFKNINDSLGHALGDELLKQFAMRLQNRLRQHEVLARLGGDEFVLLLEELDPDLD 424

Query: 188 -SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALY 245
            S+  A  +A  L+ +I+  +  +       +T S GI      +   S I+ +AD ALY
Sbjct: 425 KSQAIAGQVAKALQTLIQ--EPFVLENNPYTLTCSIGITLFDKTDFNESEILKQADLALY 482

Query: 246 VAKKSGRNRVVCFSDIENNTC 266
            +K  GRN    F    +   
Sbjct: 483 RSKHRGRNCYSFFEQEMSEQA 503


>gi|77166140|ref|YP_344665.1| PAS sensor diguanylate cyclase/phophodiesterase [Nitrosococcus
           oceani ATCC 19707]
 gi|254435345|ref|ZP_05048852.1| PAS fold family [Nitrosococcus oceani AFC27]
 gi|76884454|gb|ABA59135.1| diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
 gi|207088456|gb|EDZ65728.1| PAS fold family [Nitrosococcus oceani AFC27]
          Length = 596

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 91/203 (44%), Gaps = 10/203 (4%)

Query: 65  LVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           L+   S+  +  T + + G +     +  L    +++S  +  D L+GL+N   F   L 
Sbjct: 122 LIVQTSIAPLRDTQNRIFGAVLVLRDISPLRALASQLSHQATHDALTGLINRREFEVRLR 181

Query: 124 SYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
              + +        + + D+D FK +ND  GH  GDK++  L+  L         + RLG
Sbjct: 182 KALDDVRQNDTCHVLCYLDLDQFKVVNDTCGHLAGDKLLRQLATLLQDKIRESDCLARLG 241

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPIST 235
           G+EF    LG     A  +A  LR +I N + N   G +  +  S G +A       +  
Sbjct: 242 GDEFGVLLLGCDLAHARKVAESLRILIRNFRFNCK-GNTFPLGASIGLVAIAQGSGGLEE 300

Query: 236 IIYRADQALYVAKKSGRNRVVCF 258
           ++  AD A YVAK  GRNR+  +
Sbjct: 301 VLSAADTACYVAKAQGRNRIHVY 323


>gi|332304916|ref|YP_004432767.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172245|gb|AEE21499.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 339

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 52/171 (30%), Positives = 77/171 (45%), Gaps = 4/171 (2%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFG 147
           +  L     +  Q +  D L+GL N   F   L ++  +  + ++  D+D FK IND  G
Sbjct: 165 ISRLRSQLEQSQQAALYDALTGLCNRRYFDEELAAHAMRPHMCLILVDLDNFKTINDTHG 224

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD V+   + +L V         R GGEEFA          A  +A  +R+ IE   
Sbjct: 225 HVMGDLVLKACAKKLQVACREGAQAFRFGGEEFAIIVPNCKLNVARQIAETMRRAIEKIG 284

Query: 208 INISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +       +   I+ S G+AE         +I  AD+ LY AK  GRNRV+
Sbjct: 285 VKDKRTSEVLGGISASFGVAEMKQGMNPLGLIQAADKHLYDAKNLGRNRVM 335


>gi|311696418|gb|ADP99291.1| GGDEF family protein [marine bacterium HP15]
          Length = 355

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 63/196 (32%), Positives = 95/196 (48%), Gaps = 14/196 (7%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           +   +  S+ ++ L   I   ++ +L      +++L+  D L+G LN S     L     
Sbjct: 145 DFWRITFSLGLTCLFAMIFAWLVGKL---QQELTRLATTDPLTGCLNRSQLADILNGQIQ 201

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               Y    S++  D+DYFK IND +GH  GDKV+  ++ +L         + R+GGEEF
Sbjct: 202 MRERYERVSSLILLDLDYFKTINDQWGHLAGDKVLTEMALRLRSRLRESDQLFRIGGEEF 261

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                 + +++A +LAN L   I            I +T SA +AE    E  S  + RA
Sbjct: 262 MIVLPETRQKDADVLANQLLTSISARPFL----EDIKVTASASVAEVSKGETWSVWLNRA 317

Query: 241 DQALYVAKKSGRNRVV 256
           DQALY AK  GRN+VV
Sbjct: 318 DQALYEAKSRGRNQVV 333


>gi|271501902|ref|YP_003334928.1| PAS/PAC sensor-containing diguanylate cyclase [Dickeya dadantii
           Ech586]
 gi|270345457|gb|ACZ78222.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dickeya dadantii Ech586]
          Length = 689

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 83/188 (44%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S + +       I + +  D ++ L N   F   L             ++++  D+D+FK
Sbjct: 240 SDITQRKKQEELIWRQANYDAVTALPNRHRFQDKLERAVERAKQTGRPMALMLIDLDHFK 299

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            +ND+ GH  GD ++  +S ++         + R+GG+EFA          +   LAN L
Sbjct: 300 SVNDSLGHRAGDALLFAVSTRITDCIQNADTIARIGGDEFAIILSDLLRTDDCGRLANTL 359

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            + +     NI  G ++ ++ S GIA   +  + +  +   ADQA+Y AK +GRN    F
Sbjct: 360 LQRLAK-PFNI-DGENMLVSASIGIAFYPNDSDTLEELFKHADQAMYSAKSAGRNGFHYF 417

Query: 259 SDIENNTC 266
           +   +   
Sbjct: 418 TPALHQAA 425


>gi|241767276|ref|ZP_04765010.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Acidovorax delafieldii 2AN]
 gi|241362044|gb|EER58185.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Acidovorax delafieldii 2AN]
          Length = 654

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 83/167 (49%), Gaps = 10/167 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           E   +  RI QL+  D L+GL N   F       ++ L    +  +++F D+D FKQ+ND
Sbjct: 295 ERDTARRRIHQLAFFDTLTGLPNRVQFRSNAEGALAHLQRSGDAGALLFVDLDRFKQVND 354

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD ++  ++ +LV        VGRL G+EF A   GS++ EA   A  L   I 
Sbjct: 355 TQGHAAGDALLEAVARRLVQACRRQDLVGRLAGDEFVAFLPGSTQDEALTAAQHLLDTIA 414

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
            + ++I     +  T S GIA        I T++  ADQA+Y AKK 
Sbjct: 415 -APLDIHGQIQVP-TASIGIAMYPGDGSDIDTLLSHADQAMYQAKKE 459


>gi|157371308|ref|YP_001479297.1| diguanylate cyclase [Serratia proteamaculans 568]
 gi|157323072|gb|ABV42169.1| diguanylate cyclase [Serratia proteamaculans 568]
          Length = 516

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 105/241 (43%), Gaps = 24/241 (9%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE-- 92
           + + IA  +   ++   +   +  + L    +    L I+     +L+  I+ S+  E  
Sbjct: 277 YPLVIAAGLSKKDVLADWRNDSGLFALGGATL----LAILLAMGMVLMRQINHSVRTEAE 332

Query: 93  LFISYNRI-------SQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           L  + +++        +L+ +D L+GL N   F  +L             ++++  DIDY
Sbjct: 333 LMRTRDQLTSINRTLEELALLDGLTGLANRRQFDIALKNELMRASRNYRSVALLMLDIDY 392

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           FKQ ND +GH  GD+ +  +   L      +   + R GGEE A     +  Q A I A 
Sbjct: 393 FKQYNDIYGHVAGDQCLQQIGQMLKGMASRSNDIMARYGGEEMAIILPDTDAQGALIFAE 452

Query: 198 DLRKIIENSQINISSGPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNR 254
            + + +   +I     P   ITIS GI       + +   + I +AD ALY AK  G+NR
Sbjct: 453 RVIEAVRELKIPHDGNPHGVITISIGIYAKVPHMYNDTPMSFINQADSALYQAKAQGKNR 512

Query: 255 V 255
           +
Sbjct: 513 I 513


>gi|114776868|ref|ZP_01451911.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Mariprofundus ferrooxydans PV-1]
 gi|114552954|gb|EAU55385.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Mariprofundus ferrooxydans PV-1]
          Length = 420

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 12/185 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFK 140
           + + E   +   I +L+  D  +GL N + F             Y+++++I+F D+D FK
Sbjct: 235 ADISERKRNEAAILKLAHFDANTGLPNRTLFFDRFTHALAQAKRYDQQVAILFLDLDGFK 294

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG--SSEQEAAILAND 198
            +ND  GH  GD ++  ++ +LV        V R GG+EFA       + +    ++A+ 
Sbjct: 295 AVNDTLGHVAGDTLLQEVAARLVKAIREVDTVARFGGDEFAFILYDVTTDQHMTQVVADR 354

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +      I  G   HI  S GI+        +  +I++AD A+Y AK SG+NR + 
Sbjct: 355 ILAGLAT--PFIIDGIPCHIGGSIGISLFPENATDMDALIHQADTAMYAAKNSGKNRYLF 412

Query: 258 FSDIE 262
           +    
Sbjct: 413 YEPDM 417


>gi|88859155|ref|ZP_01133796.1| putative Sensory box protein [Pseudoalteromonas tunicata D2]
 gi|88819381|gb|EAR29195.1| putative Sensory box protein [Pseudoalteromonas tunicata D2]
          Length = 1503

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 11/188 (5%)

Query: 85   ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
            +  + + E   +   +  L+  D L+ L N S  +  +         +  +L+++F D+D
Sbjct: 1054 VVITDISEQKDAEKELRVLANYDTLTKLPNRSLLLDRISHATELSRRHKNRLALLFIDLD 1113

Query: 138  YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            +FKQ+ND  GH +GD ++  ++ +L         V RLGG+EF          +   L  
Sbjct: 1114 HFKQVNDTLGHDLGDTLLITVAQRLKYGLRKQDTVARLGGDEFVILIEDIDTID--ELIP 1171

Query: 198  DLRKIIENSQINISSG-PSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRV 255
              RKI E   + +  G   + +  S G+A        S  ++  AD A+Y AKK G    
Sbjct: 1172 VCRKICEEVSLPVQLGNHRMTVEPSIGVAIFPDDADNSLDLLKSADIAMYHAKKRGGATY 1231

Query: 256  VCFSDIEN 263
              F    N
Sbjct: 1232 QFFHQEMN 1239


>gi|238789037|ref|ZP_04632826.1| Diguanylate cyclase with PAS/PAC sensor [Yersinia frederiksenii
           ATCC 33641]
 gi|238722801|gb|EEQ14452.1| Diguanylate cyclase with PAS/PAC sensor [Yersinia frederiksenii
           ATCC 33641]
          Length = 693

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 8/179 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDI 136
             +    +         +   +  D L+GL+N       L     +L       + + D+
Sbjct: 511 AVVVFQDVTRARHEQRELQYQANHDMLTGLINRRRLEERLNQSISQLGNDDQHILCYVDL 570

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK +ND+ GH  GD V+  ++  +         V RLGG+EFA        + A  L 
Sbjct: 571 DYFKDVNDSAGHEAGDMVLRMVAQTMQQAVRENDLVARLGGDEFAIVLFNCHSKSATELL 630

Query: 197 NDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +   I + Q +   G S   T S G ++     E  +  + +AD A Y AK +GRNR
Sbjct: 631 ETVVADIASLQFHWH-GQSYTFTASLGAVSLTPQTENAAQAMRQADIACYAAKHAGRNR 688


>gi|104780661|ref|YP_607159.1| sensory box protein/GGDEF family protein [Pseudomonas entomophila
           L48]
 gi|95109648|emb|CAK14349.1| putative sensory box protein/GGDEF family protein [Pseudomonas
           entomophila L48]
          Length = 818

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 54/204 (26%), Positives = 94/204 (46%), Gaps = 16/204 (7%)

Query: 70  SLVIISITISLLL--GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAF---- 118
           S V +++  S +L  G +SG ++    ++  R     +S  +  D L+GL N   F    
Sbjct: 333 STVSVNLVGSPILTEGQVSGIVVVLHDMTQERQYIANLSWQATHDALTGLANRREFEYRL 392

Query: 119 ---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
              +++L     + S++F D+D FK +ND  GH  GD+++  +   L         + RL
Sbjct: 393 EQALNALARQAGRHSLMFLDLDQFKLVNDTCGHAAGDELLRHICAVLQSGLREGDTLARL 452

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPIS 234
           GG+EF          +A  +A  LR+ +++    +  G     T+S G+         + 
Sbjct: 453 GGDEFGVLLENCPPDQAERIAEHLRQAVQSLHF-VWKGRPFVTTVSIGLVHIAQPPGTLE 511

Query: 235 TIIYRADQALYVAKKSGRNRVVCF 258
             +  AD A Y+AK+ GRNRV  +
Sbjct: 512 ASLRAADMACYMAKEKGRNRVQVY 535


>gi|330829848|ref|YP_004392800.1| signal transduction family protein [Aeromonas veronii B565]
 gi|328804984|gb|AEB50183.1| Signal transduction family protein [Aeromonas veronii B565]
          Length = 348

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 84/186 (45%), Gaps = 10/186 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFF 134
           L  I     KEL  +  ++  LS  D L+ + N   F +SL    E        ++++  
Sbjct: 151 LELIIELRTKELAEANRKLEALSNTDGLTNIGNRRLFDNSLNQAWERCIQTEMPIALIML 210

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           DID+FKQ ND +GH  GD+ +  L+  L      +   V R GGEEF         Q A 
Sbjct: 211 DIDHFKQFNDLYGHVAGDECLRLLAHTLAQSGRRSGELVARYGGEEFVILLPHVERQSAY 270

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSG 251
            +A  ++++I       +   +  +T+S G+A          S ++  AD ALY AK SG
Sbjct: 271 EIAQHIQRLIFALAQPHAQNATGLLTVSMGVACLRPSSHWQPSELVKLADAALYTAKSSG 330

Query: 252 RNRVVC 257
           RN +  
Sbjct: 331 RNCIRL 336


>gi|302877995|ref|YP_003846559.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
           capsiferriformans ES-2]
 gi|302580784|gb|ADL54795.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
           capsiferriformans ES-2]
          Length = 357

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 11/173 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFG 147
            +  +++ L+  D L+GL N       +           +K +++F D+D+FKQIND  G
Sbjct: 180 KTEKQLAYLAYHDTLTGLPNRQLLQERIRQRLTQSTRSTKKFTLIFIDLDHFKQINDTLG 239

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD V+   + +L+        V RLGG+EF   A   S   A  +     K I +  
Sbjct: 240 HAIGDSVLCEAAKRLLASVRKADTVARLGGDEFVILAENLS--GADNIGLFCNKAIASLA 297

Query: 208 INIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +  +G  + +  S G AE   H +  +T++  ADQA+Y AK +G N    +
Sbjct: 298 HPMQVAGHELFVGGSFGCAEYPQHGDDETTLMEHADQAMYQAKSAGGNTFNIY 350


>gi|254522408|ref|ZP_05134463.1| hypothetical protein SSKA14_1536 [Stenotrophomonas sp. SKA14]
 gi|219719999|gb|EED38524.1| hypothetical protein SSKA14_1536 [Stenotrophomonas sp. SKA14]
          Length = 481

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 15/199 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEK 128
           +  +L  G  S  +  +L      + QL+R D L+G+ N   F +               
Sbjct: 278 VVATLGFGLRSILLQTDLMERQAGLDQLARQDGLTGVANRREFDALLLAEWNRARRSGSP 337

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGS 187
           L ++  DID+FK  ND  GHP GD+ +  ++  L  +       V R GGEEFA    GS
Sbjct: 338 LGLLLVDIDHFKAFNDQHGHPAGDRCLQAVAAVLKAIAGRAGDSVARYGGEEFAVIVPGS 397

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALY 245
           +      LA  LR+ +E   +     P   ++IS G+             ++  AD  LY
Sbjct: 398 ALSGVLALAERLREAVEALPL-----PEGSVSISIGVGYLHPPALASADQLLADADAGLY 452

Query: 246 VAKKSGRNRVVCFSDIENN 264
            AK++GRN+VV  + + ++
Sbjct: 453 AAKRAGRNQVVLHAHVLDD 471


>gi|160941315|ref|ZP_02088652.1| hypothetical protein CLOBOL_06208 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435876|gb|EDP13643.1| hypothetical protein CLOBOL_06208 [Clostridium bolteae ATCC
           BAA-613]
          Length = 522

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 7/166 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL--GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
             +I   S  D L+GL N   F   +        +S+++ D+D FK++ND +GH VGD V
Sbjct: 359 EKQIRHSSNTDFLTGLYNRRCFYQYIHNNRGGRTVSLMYIDLDRFKEVNDTYGHKVGDAV 418

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSG 213
           +   +D L  +F    FV RLGG+EF    LG  S  +    A    K  E     +++ 
Sbjct: 419 LVHTADVLRRLFR-DDFVARLGGDEFLVVRLGKCSMDQMEQEAEAFLK--EMRTAFLAAE 475

Query: 214 PSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
            ++ ++ S GIA+       I  ++ R+DQALY AKK+GR+R   +
Sbjct: 476 QTVSLSASVGIAQSSDSMVDIDALLQRSDQALYQAKKAGRSRYCVY 521


>gi|71909235|ref|YP_286822.1| diguanylate cyclase with PAS/PAC sensor [Dechloromonas aromatica
           RCB]
 gi|71848856|gb|AAZ48352.1| diguanylate cyclase with PAS/PAC sensor [Dechloromonas aromatica
           RCB]
          Length = 583

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 77/189 (40%), Gaps = 21/189 (11%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
             L E       I QL+  D L+ L N   F   L              ++++ D+D FK
Sbjct: 384 RDLTERMKYEGTIHQLAYYDALTDLPNRRLFFDHLAKALALSQRSGNYGAVIYLDLDNFK 443

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA------LGSSEQEAAI 194
            +ND +GH  GD ++   + +L         V RLGG+EF             + ++A  
Sbjct: 444 PVNDQYGHIAGDLLLQEAARRLAGCVRDHDTVARLGGDEFVVLLVNVAPTPDEALKQAKH 503

Query: 195 LANDLRKIIE-------NSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYV 246
           +A  +R  +        +++  +        + S G+       E    I+ RAD A+Y 
Sbjct: 504 VAERIRDDLAKTYSLAFDTEEEMGKTVEHQCSASLGMTLFPPCGESGEAILRRADNAMYQ 563

Query: 247 AKKSGRNRV 255
           AK +GRN++
Sbjct: 564 AKAAGRNQI 572


>gi|260775416|ref|ZP_05884313.1| hypothetical protein VIC_000790 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608597|gb|EEX34762.1| hypothetical protein VIC_000790 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 648

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 58/190 (30%), Positives = 86/190 (45%), Gaps = 8/190 (4%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDY 138
           L  I  +      +S   +   + ID L+GL N   F   L  +      L +++ DID 
Sbjct: 201 LVLIQDADETPKHLSNKPLED-AHIDSLTGLYNRFGFTKRLEQFIHNETPLLLLYLDIDN 259

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK IND+ GH +GDKVI  +S +L  +      VG LGG+EF        + + A ILA 
Sbjct: 260 FKNINDSLGHHIGDKVIKEVSSRLKRLLPQHAVVGHLGGDEFGLILPEPENNRMAEILAE 319

Query: 198 DLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  +I  +Q       S  +  S G +           ++  AD A+Y AK  GRNR++
Sbjct: 320 RIISLI--NQPFDLHHFSKRLACSIGSVTYPGDGNDARILLQNADTAMYEAKDRGRNRLI 377

Query: 257 CFSDIENNTC 266
            F+D  N   
Sbjct: 378 KFNDQMNKEA 387


>gi|220906648|ref|YP_002481959.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7425]
 gi|219863259|gb|ACL43598.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Cyanothece sp. PCC 7425]
          Length = 792

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 12/185 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQIN 143
           E   +  ++  +S  D L+ L N +     L            ++ +++F D+D FK IN
Sbjct: 335 ERQQANAQLVTVSLRDALTSLPNRTLLFDRLEHALQRYQRHPQQQFAVLFLDMDRFKSIN 394

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKI 202
           D+ GH  GD+V+  ++ +L         V RLGG+EF        + Q+A   A  ++ I
Sbjct: 395 DSLGHTAGDQVLLEMAHRLSQSVREEDTVARLGGDEFVILLEEVMNLQDALHCAQRIQDI 454

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +        +G  + +  S G+A    +      ++  AD A+Y AK +GR     F+  
Sbjct: 455 LAV--PFELNGTVVSLDASIGVALADARYHTPEELLRDADIAMYEAKAAGRGGYQVFAPQ 512

Query: 262 ENNTC 266
            +   
Sbjct: 513 MHEQA 517


>gi|148657976|ref|YP_001278181.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Roseiflexus sp.
           RS-1]
 gi|148570086|gb|ABQ92231.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Roseiflexus sp. RS-1]
          Length = 892

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 13/192 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDID 137
           S + + +  ++  R+   +  D L+GL N + F+  LG        S +   +++  D+D
Sbjct: 444 SQTDITDRKLAEQRLWYNAFHDSLTGLANRARFMDRLGHVIARARRSASPPYAVLILDLD 503

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LA 196
            FK IND+ GH VGD+++  ++ +L         +  LGG+EFA      SE  AA+ +A
Sbjct: 504 RFKLINDSLGHLVGDQLLIAIARRLEQSLRPGDTLAHLGGDEFAVLLEDLSEPHAAVNVA 563

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNR 254
             +  + E  +    +   +  + S GIA   +      S ++  AD A++ AK  GR R
Sbjct: 564 ERILHLFE--EPFHLNEHEVFSSASIGIALSDNLRYHSPSDMLRDADTAMHHAKMEGRAR 621

Query: 255 VVCFSDIENNTC 266
              F    ++  
Sbjct: 622 YAVFHPTMHDRA 633


>gi|119945285|ref|YP_942965.1| diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37]
 gi|119863889|gb|ABM03366.1| diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37]
          Length = 610

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 12/186 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           +E       ++ L+  D L+GL N    I  L            + +++F D+D+FK IN
Sbjct: 163 EEKSKRAEELNDLAFYDALTGLPNRRILIDRLHHALSSNVRQGFESAVMFIDLDHFKDIN 222

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ--EAAILANDLRK 201
           D  GH VGD ++  ++ +L         V RLGG+EF        ++  EAA  AN +  
Sbjct: 223 DTLGHEVGDLLLIQIAQRLESCLRKCDTVARLGGDEFVLILENLDQKTIEAAAKANFIAD 282

Query: 202 II--ENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCF 258
            I    ++         + T+S G+A   H  +    ++ +AD A+Y AKK+G N +  F
Sbjct: 283 KIFAALNKPYQLDMHECYSTVSIGLAFFGHEGKTAEGLLKQADIAMYQAKKAGGNTMRFF 342

Query: 259 SDIENN 264
           +    +
Sbjct: 343 NQKMQD 348


>gi|323698265|ref|ZP_08110177.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Desulfovibrio sp. ND132]
 gi|323458197|gb|EGB14062.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Desulfovibrio desulfuricans ND132]
          Length = 444

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 11/181 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E       + +L+ +D L+G+ N   F   L         Y  +++++F D+D+FK+
Sbjct: 261 DITERKNVELELKRLATLDSLTGVANRHRFFDRLEHALAVAKRYGTRVAVLFVDLDHFKR 320

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND  GH  GD+++  ++ +L         + RLGG+EF     G   ++ A   A DL 
Sbjct: 321 VNDTHGHQTGDELLRLVAGRLRQRTRESDTLARLGGDEFGILLPGIVDQEGALSFARDLL 380

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +++   Q     G  + I  + GI+          T+I RAD A+Y AKK GR+    F+
Sbjct: 381 EVVR--QPYEVGGLPLTIGATVGISFYPEDGRDTVTLISRADAAMYGAKKRGRSDFGTFA 438

Query: 260 D 260
           +
Sbjct: 439 E 439


>gi|260222160|emb|CBA31448.1| hypothetical protein Csp_F37580 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 366

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 91/184 (49%), Gaps = 22/184 (11%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQIND 144
           + +      +S LS  D L+ L N  A   ++  +          +++  D+D+FK++ND
Sbjct: 184 QSVETENRELSALSLTDPLTRLGNRRALERAVEQWQMQSELGTPAALLMVDVDHFKRVND 243

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           ++GH  GD+V+  L+ QL         V R GGEEFA    G+    A+ +A  +  +++
Sbjct: 244 SYGHEEGDRVLQELARQLQASKRGSDVVVRYGGEEFALWLPGAGPDGASAIAQRVHLLVQ 303

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIST---------IIYRADQALYVAKKSGRNRV 255
           + +++        +T+S G++  C ++ +           ++++AD ALY AK +GRNR 
Sbjct: 304 DVRVHKK-----PVTVSIGVS--CAQQTLHQGRDMVFLTRLLHQADLALYRAKSAGRNRT 356

Query: 256 VCFS 259
           +   
Sbjct: 357 MWHD 360


>gi|320353672|ref|YP_004195011.1| diguanylate cyclase [Desulfobulbus propionicus DSM 2032]
 gi|320122174|gb|ADW17720.1| diguanylate cyclase [Desulfobulbus propionicus DSM 2032]
          Length = 332

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 10/173 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           +  I Y  I   +R D L+GL N   F   +G        +   L++   D+D+FK +ND
Sbjct: 162 KRAIEYEEIFAQARKDSLTGLPNRFVFEERIGAIVEQANRHGRPLTLAALDLDHFKAVND 221

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH +GD+V+  +++ L         + R+GG+EF      ++ ++A  LA  L + +E
Sbjct: 222 TMGHLMGDQVLKQVAEVLQRQIRLSDLLVRMGGDEFLLVLPDTAMEDARFLAERLCQAVE 281

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              I   +G    + +S G++E      +   + RAD  LY AK +GR +V  
Sbjct: 282 ELNIVTQAG---RLAVSIGLSEWKSGMQLDAWLERADDILYQAKANGRAQVAV 331


>gi|313108490|ref|ZP_07794494.1| putative sensory box/GGDEF domain-containing protein [Pseudomonas
           aeruginosa 39016]
 gi|310880996|gb|EFQ39590.1| putative sensory box/GGDEF domain-containing protein [Pseudomonas
           aeruginosa 39016]
          Length = 307

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 8/163 (4%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q +  D L+G  N  A   +LG   E        LS++  DID+FK++ND++GH VGD+ 
Sbjct: 145 QTALRDALTGTGNRIAMDQALGRELELARRNLQPLSVLMLDIDHFKRVNDHYGHTVGDEA 204

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +++ +         V R GGEEF      +  Q A ++   LR+ +E       +G 
Sbjct: 205 LKAVAETIKDHLRNVDMVFRFGGEEFLVLLSSTPLQAACMVGERLRQAVEELDYRH-AGE 263

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + ++IS G A+    E    ++ R D+ALY AK+ GRNR+ C
Sbjct: 264 PLKLSISLGCADLRPGEGSDDLLRRVDEALYEAKRDGRNRLRC 306


>gi|256822386|ref|YP_003146349.1| response regulator receiver modulated diguanylate cyclase
           [Kangiella koreensis DSM 16069]
 gi|256795925|gb|ACV26581.1| response regulator receiver modulated diguanylate cyclase
           [Kangiella koreensis DSM 16069]
          Length = 426

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 58/181 (32%), Positives = 94/181 (51%), Gaps = 9/181 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
           Y+  ++     I Y +++  +  D L+GL N   F   +         ++  ++    DI
Sbjct: 238 YLRVAVNTSRVIEYEKLTTAATKDYLTGLNNRRHFYELVEVMHNSAVRHSTPIACALVDI 297

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FKQ+ND +GH VGD V+  ++  L         V R GGEEF    +G + + + I  
Sbjct: 298 DHFKQVNDTYGHQVGDAVLTEIAKILESSVRKSDVVARFGGEEFCMYMVGINRENSEIFF 357

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + L K +EN+ I+I  G  + +TIS G+    H   + ++I  ADQ LY AK++GRN+VV
Sbjct: 358 DKLLKRVENTAIDI-DGLEVKVTISIGV-NINHHHVLDSMIEIADQCLYEAKETGRNKVV 415

Query: 257 C 257
            
Sbjct: 416 I 416


>gi|158424389|ref|YP_001525681.1| hypothetical protein AZC_2765 [Azorhizobium caulinodans ORS 571]
 gi|158331278|dbj|BAF88763.1| protein of unknown function [Azorhizobium caulinodans ORS 571]
          Length = 309

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 9/177 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
            + E       + +L+ ID L+ + N   F+             +  LS++  DID+FK 
Sbjct: 124 DVTERRRMETELRRLATIDPLTEIFNRRHFMEVARQAFAEAERSHAPLSLLTLDIDHFKI 183

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH +GD+VI  ++ +          + R+GGEEFA    G++ QEA   A  L  
Sbjct: 184 VNDTHGHGIGDEVIRAVARRCGQTLRPKDVLARMGGEEFAILMPGTTAQEACAQAWALFD 243

Query: 202 IIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + +  + +     + ++IS G A+       +   + RAD+ALY AK+SGR RVV 
Sbjct: 244 GVTSEPLVLPE-LQLRVSISVGGAQCLPDDSSLDATLTRADRALYAAKRSGRGRVVF 299


>gi|83648396|ref|YP_436831.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83636439|gb|ABC32406.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 966

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 11/188 (5%)

Query: 83  GYISGSI--LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVF 133
           G++ GSI  + E   +  ++  L+R D L+GLLN + F   L            + +++F
Sbjct: 526 GFVEGSIVDITEKKENEQQLHYLARHDPLTGLLNRTEFEYRLNNALVRSREQGLQHALLF 585

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK +ND  GH  GD+++  ++            + RLGG+EF         ++A+
Sbjct: 586 MDLDQFKIVNDTSGHAAGDELLRQIAVMFRQHLRERDSLARLGGDEFGILLERCGIEKAS 645

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGR 252
            +A+ LR  +   +  +       + +S GI       P I  I   AD A Y AK +GR
Sbjct: 646 EIAHRLRNEVSEFRFALKE-KVFSVGVSIGIVPITAATPSIEEIFSLADTACYAAKDAGR 704

Query: 253 NRVVCFSD 260
           NR++  ++
Sbjct: 705 NRIIVHNE 712


>gi|148547411|ref|YP_001267513.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1]
 gi|148511469|gb|ABQ78329.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1]
          Length = 695

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 103/213 (48%), Gaps = 14/213 (6%)

Query: 64  ILVENLSLVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +L+  L+++ +++  S+L   L   +  + + L ++   ++QL+  D L+ L N +    
Sbjct: 220 VLITTLAVLAVALLTSVLDARLEARTAELARSLTLANQELTQLALHDTLTDLPNRTLLAD 279

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            +     K        +++F D+D FK +ND FGH +GD ++  ++ +L     +   + 
Sbjct: 280 RIEQAIAKVAEQGGCFALMFIDLDGFKPVNDAFGHHIGDLLLKAVAARLRGHLHSQDTLA 339

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           R+GG+EF          +A  +A  ++++   S+    +   + ++ S GI     + + 
Sbjct: 340 RIGGDEFVLLVELQEPNDAMDVA--VKQVNLVSRPFRVAEHDLQLSASLGIVLYPGNGQD 397

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
              ++  AD A+Y AK +G+N    F D+  N+
Sbjct: 398 QHELLRNADAAMYHAKSAGKNGYSFF-DVSMNS 429


>gi|260777933|ref|ZP_05886826.1| hypothetical protein VIC_003330 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605946|gb|EEX32231.1| hypothetical protein VIC_003330 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 572

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 13/191 (6%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------ 127
           ++ TI+  LG    ++         ++   +  D L+GL N   F               
Sbjct: 360 LAFTIAEHLGLALANL-----SLQEKLRSQAMRDPLTGLFNRRYFEEIFEKEWAKASQDD 414

Query: 128 -KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             +S++  D+D+FK+ NDNFGH  GD V+  +++ L    G      RLGGEE A  +  
Sbjct: 415 CPMSLLMLDLDHFKRFNDNFGHDAGDYVLKEVANLLKREIGDEHVACRLGGEELAVISPN 474

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALY 245
            S  E+  LAN +   + +  +++       + +S G+          + +I  AD ALY
Sbjct: 475 CSISESMELANQIVNSVRDLHLDMKGLSLGQLGVSIGVTTFPDLNTSTTELIKAADTALY 534

Query: 246 VAKKSGRNRVV 256
            AK +GR++ V
Sbjct: 535 QAKDNGRSQAV 545


>gi|163748444|ref|ZP_02155698.1| sensory box protein [Shewanella benthica KT99]
 gi|161332022|gb|EDQ02699.1| sensory box protein [Shewanella benthica KT99]
          Length = 819

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 63/235 (26%), Positives = 103/235 (43%), Gaps = 18/235 (7%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG--------SILKELF 94
            F   ++   I    ++G  +   +N ++    +T+S + G  S         S +    
Sbjct: 326 AFFTELWSRLIHKGKWHGEIWNRRKNGAVFPQMLTVSSVSGEDSEVRYFVAVFSDITLQK 385

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFG 147
            S   ++  +  D L+ L N  A IS +            +L+ VF D+D+FK IND+FG
Sbjct: 386 KSEAELAHQAYHDPLTQLPNRMALISLIEQDIRHAEVQQGQLATVFIDVDFFKHINDSFG 445

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENS 206
           H  GDK++  L+ +L  + G    + R+GG+EF          E   LA + LRK  E  
Sbjct: 446 HLAGDKILVELAGRLTSLKGAEDTLARIGGDEFVVLLPQVEGNEELTLALSKLRKAFEQ- 504

Query: 207 QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
              I     I +T S G++   H      T++  AD A + AK  GRN    +++
Sbjct: 505 PFIIDDNEPIRLTASMGVSVFPHDGKDSYTLLRNADSAKHRAKLDGRNSYAFYTE 559


>gi|258513411|ref|YP_003189633.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257777116|gb|ACV61010.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 738

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 7/176 (3%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQ 141
             + E      +I  L+  D L+ + N      SL  Y          +++  D+D FK 
Sbjct: 294 RDISERKKFELQIKHLATHDYLTNIPNRYYLEESLKRYVAKAKRGTTSALLLLDLDNFKL 353

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD+++   +  L         + RLGG+EFA    G S  EA  +A  LR 
Sbjct: 354 VNDTKGHVAGDELLIIFTKILKANLREEDLLTRLGGDEFAVLLEGISINEATEIAEKLRA 413

Query: 202 IIENSQINIS-SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +I+N  I +S      ++T+S G++          I+ +AD+ALY+AK+SGRNRV+
Sbjct: 414 VIDNQTIALSLINVRFNLTVSIGLSMVDGSMDPIQILSQADRALYIAKESGRNRVI 469


>gi|213968349|ref|ZP_03396493.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
 gi|302060478|ref|ZP_07252019.1| GGDEF domain protein [Pseudomonas syringae pv. tomato K40]
 gi|213926987|gb|EEB60538.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
          Length = 502

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 94/208 (45%), Gaps = 15/208 (7%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           ++   +++    SL+ + I   + L ++    L+    + + ++ L+  D L+GL N   
Sbjct: 293 WHRNAWLIGTATSLLCLGI---VWLTWLLCGELRRRHRAEDELASLAATDGLTGLDNRRQ 349

Query: 118 FIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
                           + LS++  D+D+FK  N+  GH  GD+ +  ++  +      P 
Sbjct: 350 LDEAMETEWARAQRSGKWLSLLMIDVDHFKAFNERHGHQGGDEALRRIAQAVAGTIRRPG 409

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC- 228
             + R GGEEF A    +    A ++A  +R  +E+            IT+S G+A +  
Sbjct: 410 DQLARYGGEEFVAVLPETDMNGALVIAEKIRAAVESLPRYADDEQ--PITVSIGVASQIV 467

Query: 229 -HKEPISTIIYRADQALYVAKKSGRNRV 255
              + ++     AD+ALY AK +GRNRV
Sbjct: 468 EQGDKLAAFFGIADKALYQAKHNGRNRV 495


>gi|167589118|ref|ZP_02381506.1| hypothetical protein BuboB_27536 [Burkholderia ubonensis Bu]
          Length = 761

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 14/184 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + E       +   +  D L+ L N    +  +          + ++++ F D+D FK 
Sbjct: 318 DISEAKRLEELLHNRANYDTLTKLPNRLLMMDRIAEAVAKAQRDHGRVAVAFVDLDRFKF 377

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD ++  ++ +L         V RLGG+EF         + A  ++  +++
Sbjct: 378 INDSLGHDAGDVLLQEIARRLCECVRESDTVARLGGDEFVILM-----EVAGDVSPVMQR 432

Query: 202 IIENS-QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I++   Q    +G    +T S G++          T++  AD A+Y AK+ GRN    F 
Sbjct: 433 IVDRIGQPVTLAGEEHAVTCSIGVSVYPQDGRDAETLLKNADTAMYQAKEIGRNSFQFFK 492

Query: 260 DIEN 263
           D  N
Sbjct: 493 DDMN 496


>gi|116048770|ref|YP_792430.1| hypothetical protein PA14_53310 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115583991|gb|ABJ10006.1| hypothetical protein PA14_53310 [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 681

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 10/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
             + +      ++ +++  D L+GL N  AF   LG           +L++++ D+D FK
Sbjct: 501 RDVSDQIAYQQQLLEMAYRDPLTGLGNRKAFDEQLGQALLRAGSGGSELALLYLDLDRFK 560

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND FGH +GD ++  +++++      P    RLGG+EFA     S E     LA  L 
Sbjct: 561 EVNDRFGHDIGDALLRTVAERVRSTLRQPDKAYRLGGDEFAVLLEDSQENNPQRLAERLL 620

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +    I ++      +T S GIA    H      ++  AD A+Y AK+  RN    +
Sbjct: 621 AAL-VQPIALNGERIDFVTPSIGIALYPRHAGDAEGLVRAADSAMYQAKRQ-RNHYCLY 677


>gi|167644705|ref|YP_001682368.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Caulobacter sp. K31]
 gi|167347135|gb|ABZ69870.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Caulobacter sp. K31]
          Length = 735

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 11/186 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            + E   +  +I++L+  D L+ L N   F       +S      + +++   D+D FK 
Sbjct: 264 DIAERKRAEAQIARLAHYDPLTDLPNRLLFQKDLSAALSRAARREDLVAVHCIDLDRFKT 323

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           +ND  GHP+GD ++   +++L         V RLGG+EFA    G +    A  LA  + 
Sbjct: 324 VNDTLGHPIGDALLKTAAERLRACVREGDTVARLGGDEFAVVQTGLTDLTGATRLAGRIV 383

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +  +      G  + I  S G+A           ++ +AD ALY AK  GR     F 
Sbjct: 384 EALAET--FDLQGHQVMIGGSVGVAVSPNDGSDSDELLKKADMALYRAKADGRGTFHFFE 441

Query: 260 DIENNT 265
              +  
Sbjct: 442 RAMDEA 447


>gi|115525939|ref|YP_782850.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
 gi|115519886|gb|ABJ07870.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
          Length = 400

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 123/268 (45%), Gaps = 23/268 (8%)

Query: 3   RSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIG--LTPFYG 60
           +S+   +S+ L   +      P   M   ++   + +A +   +   L  +G  LTP + 
Sbjct: 127 QSIPLAMSMRLLLSRRDGRSHPGAQMT--AVISGLMLAVLTIRSVAALLGVGGELTPMHF 184

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
            ++    +  +V++ + +S++  +  G +L  +    + +++L+ +D L+G+ N    + 
Sbjct: 185 NQF----HAGMVVVLVFLSMMWCF--GFLLMAIDRLRSEVAKLAMLDDLTGVANRRLLLQ 238

Query: 121 SL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L           E  +++  D+D FK +ND+FGH  GD+ +   +            + 
Sbjct: 239 RLTEQCVLSQRTGEPFAMLAIDLDGFKAVNDSFGHGAGDECLRAFTRVAQGRLRPGDLLA 298

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KE 231
           R+GG+EF      ++ +E A++A   R+++E  ++         I+ S G+A+       
Sbjct: 299 RVGGDEFCVLMPSTTLREGAMIA---RRVMEGCRMEGEDAMR-SISASIGVAQWTELVGA 354

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               +I  ADQALY+AK  G+NR   + 
Sbjct: 355 DPERLIAAADQALYIAKNDGKNRYAVYD 382


>gi|313681601|ref|YP_004059339.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM
           16994]
 gi|313154461|gb|ADR33139.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM
           16994]
          Length = 428

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 12/166 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISS-----LGSY---NEKLSIVFFDIDYFKQINDNFGHP 149
            RI  LS  D L+ L N   F        L  +   +    ++  D+D+FK++ND FGH 
Sbjct: 264 KRIELLSITDPLTKLFNRHKFNEVFENMVLRRHWDEHRTFGLIIADVDHFKRVNDTFGHQ 323

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+  ++        T   + R GGEEF         ++A  +A  LR  +E     
Sbjct: 324 SGDRVLIEVAHIFSQTIRTGDILARWGGEEFVCLLPDVDREKALYVAEKLRLAVEQLHFP 383

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                   +T S G+      +   ++++RAD +LY AK++GRNRV
Sbjct: 384 DVG----TVTSSFGVTIFASGDTQESMMHRADLSLYKAKENGRNRV 425


>gi|269928610|ref|YP_003320931.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787967|gb|ACZ40109.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphaerobacter thermophilus DSM 20745]
          Length = 760

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 9/186 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           I+   + E       +   +  D L+GL N       L            +++++F D+D
Sbjct: 302 INARDISERKRFEKELVHQAYHDPLTGLPNRVFLQRRLADSLAQAARERTRVALLFIDLD 361

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK IND+ GH  GD+V++ L  +L+          R GG+EF     G+   +AA+ A 
Sbjct: 362 NFKLINDSLGHDAGDRVLSELGKRLLGCIRCGDMAARFGGDEFMVLINGTPGTDAALAAA 421

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
           D           +  G  + IT S G+A     +     +I  AD A++ AK  G+ R V
Sbjct: 422 DRLAATLAEPF-VVDGHELVITTSIGVALGGDPDDRPEDLIRNADAAMHRAKLLGKARRV 480

Query: 257 CFSDIE 262
            F    
Sbjct: 481 VFDPAM 486


>gi|297569300|ref|YP_003690644.1| response regulator receiver modulated diguanylate cyclase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925215|gb|ADH86025.1| response regulator receiver modulated diguanylate cyclase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 337

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           +L  +  R+++LS  D L+GL N   F                 L++V  DID FKQ ND
Sbjct: 152 QLEEANARLNELSLTDALTGLANRRCFQETIHTEWRRAMRNRHPLTLVLGDIDSFKQFND 211

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           NFGH VGD+ +  ++  +   +        R GGEEF      +  +    LA  +R+ +
Sbjct: 212 NFGHLVGDECLVRIAAVIRSPLMRPSDLAARFGGEEFVILLPETDLEGGRHLAETVRQEV 271

Query: 204 ENSQINIS-SGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           E   +    SG  + +T+S G++      +     +I  AD+ALYVAK+ GRNRV  
Sbjct: 272 EKMSVEHPESGTRLQLTMSFGVSSVVPQPEFSEQDLICAADKALYVAKEGGRNRVQV 328


>gi|148358623|ref|YP_001249830.1| GGDEF domain-containing sensory box protein [Legionella pneumophila
           str. Corby]
 gi|148280396|gb|ABQ54484.1| sensory box/GGDEF family protein [Legionella pneumophila str.
           Corby]
          Length = 835

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 89/183 (48%), Gaps = 10/183 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           I G+ + +L  + N +  L+R D L+ + N   F   L           + L+++  D+D
Sbjct: 390 IYGTDITQLKNTQNAMLNLTRRDTLTQIANRQYFEEKLIEKIYEHHLKEKSLALLLIDLD 449

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND  GHP+GDK++  +++++        F+ RLGG+EF       +   A  +A 
Sbjct: 450 NFKIVNDTLGHPIGDKLLMAVTNRMTRCLRANDFIARLGGDEFIVLLDQCNTDTAVKVAE 509

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256
            +  +++           + IT S GIA       I S ++  AD A+Y +KK+G+N+  
Sbjct: 510 KIINVLDK-PFQFDEYH-MTITASIGIAIYPETSEIASDLLKYADIAMYQSKKTGKNKCT 567

Query: 257 CFS 259
            FS
Sbjct: 568 VFS 570


>gi|148654756|ref|YP_001274961.1| PAS/PAC sensor-containing diguanylate cyclase [Roseiflexus sp.
           RS-1]
 gi|148566866|gb|ABQ89011.1| diguanylate cyclase with PAS/PAC sensor [Roseiflexus sp. RS-1]
          Length = 305

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 89/191 (46%), Gaps = 8/191 (4%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129
            I  L  +   S  K       R+  L+ +D L+G+ N           +  L  Y    
Sbjct: 111 IIGALEVFSDNSRQKAAQEEIERLRALALLDPLTGIGNRRFIESNTHSRLEELRRYGWTF 170

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            ++  DID+FK +ND FGH VGD V+  ++  L         VGR GGEEF   A   S 
Sbjct: 171 GVILIDIDHFKAVNDRFGHLVGDDVLKMVARTLAHNIRAFDVVGRWGGEEFVVIAQNVSI 230

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
                LA  LR  IE S + ++    +H+T+S G       +  ++I+ RADQ LYV+K+
Sbjct: 231 ATLESLAERLRVFIEQSSLPVAD-KVVHVTVSLGATLARRTDTPASILGRADQMLYVSKQ 289

Query: 250 SGRNRVVCFSD 260
            GRNRV    D
Sbjct: 290 RGRNRVSVEED 300


>gi|104781380|ref|YP_607878.1| diguanylate cyclase [Pseudomonas entomophila L48]
 gi|95110367|emb|CAK15075.1| putative diguanylate cyclase (GGDEF) domain [Pseudomonas
           entomophila L48]
          Length = 468

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 65/254 (25%), Positives = 120/254 (47%), Gaps = 28/254 (11%)

Query: 24  PHTFMIYFSIFFSIFIATVIFI--ANIFLFYIGLTPFY--------GLEYILVENLSLVI 73
           P   +++ ++ ++ F+ +++ +   +  +  +     +        G+  ++   L + +
Sbjct: 211 PIAALLWCALSYTPFLVSLLALTAGSTLIVAVAQNLMHFSVPQSEAGVTALMSARLGIAM 270

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------ 127
           + +   L+L  +S S  + L     R++  + ID L+G L  SAF     +  E      
Sbjct: 271 LVLG-PLVLACVS-SANRNLVA---RLAHQASIDHLTGALTRSAFTQRANTLLESRQRDA 325

Query: 128 ---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
               L+++  DID+FK IND  GH +GD+V+   S  L           RLGGEEFA   
Sbjct: 326 QPMPLTLMMLDIDHFKSINDRHGHALGDQVLRQFSLTLQDQLHEGELFARLGGEEFAIVM 385

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRAD 241
            G + ++A   A  LR+ +++  I+  +   + IT+S G+A          +  ++ +AD
Sbjct: 386 PGLAPEQARFSAERLRRTVQDLHIS-QADQRLQITVSIGLAGCSTEYPSSSLDELLAQAD 444

Query: 242 QALYVAKKSGRNRV 255
            ALY AK  GRNR+
Sbjct: 445 LALYRAKAHGRNRI 458


>gi|315636182|ref|ZP_07891436.1| GGDEF/PAS domain protein [Arcobacter butzleri JV22]
 gi|315479543|gb|EFU70222.1| GGDEF/PAS domain protein [Arcobacter butzleri JV22]
          Length = 463

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 62/178 (34%), Positives = 90/178 (50%), Gaps = 12/178 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           EL+     + Q + ID L+G+ N   F             +   LSI+  DID FK++ND
Sbjct: 284 ELYSMAQNLEQQASIDILTGIFNRMKFEEYFDLEVQKAKMHRNPLSIILLDIDDFKKVND 343

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD+VI  +S+ L         + R GGEEF      +S ++A I+AN+LRKII 
Sbjct: 344 TFGHNEGDEVIKSISNLLTKNVRGTDTLSRWGGEEFVILLPSTSLEQAKIVANNLRKIIF 403

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +   NI   P   I+ S G+A    ++    +  R D+ LY AK SG+N  + F + E
Sbjct: 404 DHDFNI---PQQKISCSFGVAIYNPEDTKEELFKRVDKILYKAKNSGKN--IVFGEDE 456


>gi|301383480|ref|ZP_07231898.1| GGDEF domain protein [Pseudomonas syringae pv. tomato Max13]
 gi|302129899|ref|ZP_07255889.1| GGDEF domain protein [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 483

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 94/208 (45%), Gaps = 15/208 (7%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           ++   +++    SL+ + I   + L ++    L+    + + ++ L+  D L+GL N   
Sbjct: 274 WHRNAWLIGTATSLLCLGI---VWLTWLLCGELRRRHRAEDELASLAATDGLTGLDNRRQ 330

Query: 118 FIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
                           + LS++  D+D+FK  N+  GH  GD+ +  ++  +      P 
Sbjct: 331 LDEAMETEWARAQRSGKWLSLLMIDVDHFKAFNERHGHQGGDEALRRIAQAVAGTIRRPG 390

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC- 228
             + R GGEEF A    +    A ++A  +R  +E+            IT+S G+A +  
Sbjct: 391 DQLARYGGEEFVAVLPETDMNGALVIAEKIRAAVESLPRYADDEQ--PITVSIGVASQIV 448

Query: 229 -HKEPISTIIYRADQALYVAKKSGRNRV 255
              + ++     AD+ALY AK +GRNRV
Sbjct: 449 EQGDKLAAFFGIADKALYQAKHNGRNRV 476


>gi|323529633|ref|YP_004231785.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1001]
 gi|323386635|gb|ADX58725.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1001]
          Length = 647

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 104/244 (42%), Gaps = 13/244 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKE 92
              IF+A  I   +  L  I +      ++  L +    ++ +   S+ +  +    ++E
Sbjct: 127 LADIFVAAPIMHNDQLLGSIVIVATTDAIKMQLAQYGCFLVGASLCSVWIASLVMRRMRE 186

Query: 93  LFISYNR-ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
                 + +  L+  D L+ L N  AF   L        + +++++++  D+D FK +ND
Sbjct: 187 RVTRVEKDLEYLASTDPLTDLPNRRAFYDELTTRLHKANTADKRVALMMVDLDNFKIVND 246

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKII 203
             GH  GD+++  +++ L  V      V R+GG+EFA      +S   A   A  + + +
Sbjct: 247 TLGHGAGDELLKQVAEALRNVVRPSDLVSRIGGDEFAVVIGPDASRVRARATAGRIARNL 306

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             S+  I  G    +T S G +        ++ ++  AD ALY AK  G++  V F    
Sbjct: 307 --SRPFILHGSDSAVTASVGFSVYPEDTVEMAELVSNADIALYSAKSRGKSIAVEFQSEM 364

Query: 263 NNTC 266
               
Sbjct: 365 TAEA 368


>gi|291613649|ref|YP_003523806.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291583761|gb|ADE11419.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 837

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 16/190 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S +     +   I  L+  D L+ L N    +  +          N   +++F D+D FK
Sbjct: 387 SDITLRKHAEEEIYTLAFYDSLTKLPNRRHLLDRINQARSISARSNHYGALLFLDMDRFK 446

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQE----AAI 194
            +ND  GH  GD  +  +S ++         V R+GG+EF      +G+  +E     A+
Sbjct: 447 ILNDTLGHDYGDLFLVEVSRRMRNCVRDMDTVARIGGDEFVVLIEEIGTDNEEVSTKVAL 506

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRN 253
           +A  +R  +  ++  +      H + S G+     ++E + T++  AD A+Y AK+SGRN
Sbjct: 507 IAEKIRAAL--TEPYLLKDKEHHSSPSIGVCLYLGNEESVDTLLRHADLAMYQAKESGRN 564

Query: 254 RVVCFSDIEN 263
            V  F     
Sbjct: 565 GVRFFDPAMQ 574


>gi|157155149|ref|YP_001461960.1| diguanylate cyclase [Escherichia coli E24377A]
 gi|157077179|gb|ABV16887.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           E24377A]
          Length = 443

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 121/237 (51%), Gaps = 19/237 (8%)

Query: 30  YFSIFFSIFIATVIFIAN--IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           Y  I+  I + +++ + N  I L++I  +      + + + L L+ +   IS L+ Y+  
Sbjct: 218 YSKIWLCIILISIVSVCNNLILLYFIDKS---HPAWYMTKFLELISMIYIISTLMYYV-- 272

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQINDN 145
                 F   N  + ++  D L+   N   FI SL   S +   S++  DID FK IND 
Sbjct: 273 ------FRKLNHANHMAIHDPLTNTYNRRYFIDSLKNISKHHDFSVIMLDIDSFKSINDK 326

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH +GD+VI  ++  +         +GRLGGEEF     G++++    +A  +RK IE 
Sbjct: 327 WGHHMGDQVIVMVTRIIKKSIRKEDILGRLGGEEFGIIIKGNTQKLLLSIAERIRKNIEE 386

Query: 206 --SQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             S+  +S GP   IT+S G    + +    S ++  AD+ALY AK++G+N+V+  S
Sbjct: 387 QCSEKLLSHGPE-KITVSIGCFTSKENNLSPSEMLVNADKALYQAKRTGKNKVIIHS 442


>gi|258512826|ref|YP_003186260.1| diguanylate cyclase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479552|gb|ACV59871.1| diguanylate cyclase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 402

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 101/235 (42%), Gaps = 10/235 (4%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY-ISGSILK 91
           +  ++   +    A   L  +G    + L  +     S +++   + +     +      
Sbjct: 165 LVLTLMQLSSSASAQAILQSLGHLALWSLILLWTTAASHIVLRFGLRIWDELRVQTRAQT 224

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL++      + ++ D L+GL N  +F   L          N  L +   DID FKQIND
Sbjct: 225 ELWVRQILSEKEAKTDALTGLYNRKSFDEYLDFALQISDGTNTPLHLAVIDIDNFKQIND 284

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGD+++   +  +        F+ R GGEEFA      + ++A      +R+ I 
Sbjct: 285 QYGHLVGDEILRRTAQAIQQHLAAGDFLARYGGEEFAVIIPEVTHEQAVQNMEKIREYIA 344

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           N       G     T+S G++     E    +  RADQ LY AK++G+N++V + 
Sbjct: 345 NVHHVELDGN--RATVSIGLSTHRPGETRDELFERADQCLYRAKQTGKNKIVAWE 397


>gi|206562440|ref|YP_002233203.1| RNase II stability modulator [Burkholderia cenocepacia J2315]
 gi|198038480|emb|CAR54438.1| putative cyclic-di-GMP signaling protein [Burkholderia cenocepacia
           J2315]
          Length = 667

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 19/192 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDID 137
           SG  + E   +  R+++L+  D L+GL N  A    +             ++ I+F D+D
Sbjct: 218 SGIDITEERNAQQRLTELANTDVLTGLPNRHAISERIHAAIAAESEQTRGQVGILFLDLD 277

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAA 193
            FK++ND++GH  GD+++  +S  +     +   + RLGG+EF       +    E  A 
Sbjct: 278 NFKRVNDHYGHITGDRLLQDVSAIISGCLPSGATLARLGGDEFLVLFEQGTRPLLEATAQ 337

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
           I+   LR  I    +       ++ + S GIA    H + + T+I  AD A+YVAK+ G+
Sbjct: 338 IILERLRTPIHLGLM------EVYTSCSIGIAMHPQHGDSLETLIRSADTAMYVAKEEGK 391

Query: 253 NRVVCFSDIENN 264
           +    FS   N 
Sbjct: 392 HTYRVFSLEMNQ 403


>gi|189425499|ref|YP_001952676.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter lovleyi SZ]
 gi|189421758|gb|ACD96156.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter lovleyi SZ]
          Length = 316

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 58/195 (29%), Positives = 84/195 (43%), Gaps = 14/195 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEK 128
           + + L        +   L  S   I QLS  D L+G  N       L         Y   
Sbjct: 115 LMVRLKTARRILDLESSLQKSLEEIKQLSIRDALTGAFNRGYLDQHLPHEIRRADRYLRD 174

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGS 187
           LS++  D+D+FK+IND +GH  GD V+      +         +V R GGEEF      +
Sbjct: 175 LSLIMMDLDHFKKINDTWGHQAGDAVLQHCIRIIAGTIRHEVDWVARYGGEEFVLVLPET 234

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-----PISTIIYRADQ 242
                 ++A  LR +IE +  +  S  ++ IT S G   R   +         ++  ADQ
Sbjct: 235 DRTGCRVVAERLRSLIEAAPCSFRS-ATLGITASFGTVTRTPADSRAINSPDQLLNLADQ 293

Query: 243 ALYVAKKSGRNRVVC 257
            LY AK++GRNRVV 
Sbjct: 294 CLYAAKQAGRNRVVA 308


>gi|33596417|ref|NP_884060.1| signalling protein [Bordetella parapertussis 12822]
 gi|33566186|emb|CAE37092.1| probable signalling protein [Bordetella parapertussis]
          Length = 691

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 11/188 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           + ++   L  +   + Q++  D L+ L N +     L              S++F D+D 
Sbjct: 245 TSALNASLAQANEELVQMALHDTLTKLPNRALLDERLKQAIIRATAAGRGFSLLFIDLDG 304

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND +GH  GD ++  ++ ++         V RLGG+EF   A      +AA LA  
Sbjct: 305 FKAINDAYGHGAGDLLLVEMAQRIKRAMRPQDCVARLGGDEFVVLADLPDPNDAAGLAER 364

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK-SGRNRVV 256
           L   +  +      G  + +  S GIA         ST++  AD A+Y AK+ S  +RV 
Sbjct: 365 LIDTL--TVPAEVQGHEVSVAASIGIALFPGDGADASTLLAHADAAMYHAKRLSQTHRVS 422

Query: 257 CFSDIENN 264
            F    N 
Sbjct: 423 FFEPSMNE 430


>gi|329902010|ref|ZP_08273002.1| hypothetical protein IMCC9480_3764 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548900|gb|EGF33524.1| hypothetical protein IMCC9480_3764 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 556

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 13/186 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
            + G  +     +  R+  ++  D L+GL N S     L              S++  D+
Sbjct: 97  LVVGRDISVQQDTEERLRHMATHDALTGLPNRSLLSDRLQMAIAQAKRTGRGFSVLALDL 156

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAIL 195
           D FK++ND  GH VGD ++    ++L         + R+GG+EF A   G+ SE E   +
Sbjct: 157 DRFKKVNDALGHLVGDTLLRVAGERLRETLRNVDTLARVGGDEFVAVLPGAVSEAEIQTV 216

Query: 196 ANDLRKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           A   R++I N Q+     G ++++  S G A    H +    ++  AD A+  AK++G+ 
Sbjct: 217 A---RRMIANMQVPFEIQGHTLYVGASIGAATYPDHGDDDVKLLSHADTAMCHAKETGKA 273

Query: 254 RVVCFS 259
           R V ++
Sbjct: 274 RCVVYN 279


>gi|283850594|ref|ZP_06367882.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
 gi|283574165|gb|EFC22137.1| diguanylate cyclase [Desulfovibrio sp. FW1012B]
          Length = 579

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 80/176 (45%), Gaps = 11/176 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139
               +EL      ++ LS  D L+GL N                 Y    S V  D+D F
Sbjct: 394 AQTNRELDHKNQALAVLSLTDRLTGLCNRRKIDQAVRAEWRRAKRYGTPFSAVMIDLDNF 453

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND FGH  GD+V+  ++D L+ +      VGR GGEEF      +  + A  LA ++
Sbjct: 454 KDINDRFGHGKGDEVLVRVADILIAMTRETDTVGRWGGEEFLLICPQTGLRAAMSLAENI 513

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           R+ I  ++     G    +T S G+A          I+ RAD ALY AK  GRNR+
Sbjct: 514 RQEIAATEFPSIGG----LTASFGLAAFSGDADPRQIVDRADAALYQAKAKGRNRI 565


>gi|152970346|ref|YP_001335455.1| hypothetical protein KPN_01794 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150955195|gb|ABR77225.1| hypothetical protein KPN_01794 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 418

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 62/202 (30%), Positives = 93/202 (46%), Gaps = 14/202 (6%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS- 124
           V+  +  ++   I L+L  I    + E       +   +  D L+GLLN   F   + + 
Sbjct: 217 VQTYAGPVVLYNIRLMLCIIH--DITEEVHLKKELEFSAAHDPLTGLLNRREFHRLVEAP 274

Query: 125 --YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                   ++  DID+FK IND  GH  GD+V+  LS  L         + R GGEEF  
Sbjct: 275 TFIPRGYCLLLIDIDHFKSINDIHGHQKGDEVLLVLSRILETSVDREDKIYRWGGEEFLL 334

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
               S    A ILA  +R+ +   Q       ++ +T+S G+AE    E +  +  R D+
Sbjct: 335 FLPHSPIGRALILAEGIRQAVSEYQ-------TLSVTVSIGVAEHHDGETVDQLFSRVDK 387

Query: 243 ALYVAKKSGRNRV--VCFSDIE 262
           ALY AK  GRNRV  + F ++E
Sbjct: 388 ALYAAKNDGRNRVSRMPFENVE 409


>gi|153216225|ref|ZP_01950329.1| sensory box/GGDEF family protein [Vibrio cholerae 1587]
 gi|124114412|gb|EAY33232.1| sensory box/GGDEF family protein [Vibrio cholerae 1587]
          Length = 579

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 11/179 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +LS +D L+ + N   F   L           + LSI+  D+DYFK  N
Sbjct: 397 EQLEAANQELERLSFLDSLTHVANRRRFDEQLHTLWHLHVREGKPLSIILCDVDYFKDYN 456

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH +GD+ +  ++     V       V R GGEEF      + +  A ++A  + + 
Sbjct: 457 DAYGHLMGDETLKQIAIAFTQVANRHSDCVARYGGEEFGILLPNTPQAGAILVAERIHEK 516

Query: 203 IENSQINISSGPSI-HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +    I          IT+S GI       ++    ++  AD+ALY AK +GRN+   +
Sbjct: 517 VRGLAIPHDHSKVADRITVSLGIVTLIPRPEDVPEQMVELADRALYQAKANGRNQTSIY 575


>gi|115524045|ref|YP_780956.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
 gi|115517992|gb|ABJ05976.1| diguanylate cyclase with PAS/PAC sensor [Rhodopseudomonas palustris
           BisA53]
          Length = 641

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 86/175 (49%), Gaps = 5/175 (2%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQIND 144
            +  +L    +R+++++  D L+GL N       L        +L+++  DID+FK  ND
Sbjct: 447 RMEDQLNALNSRLAEMATTDSLTGLANRRTLDVFLRREFSSARQLAVLLLDIDHFKGFND 506

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           + GH  GD+ +  ++  L     GTP    R GGEEFA    G  E  A  +A+ +R  +
Sbjct: 507 SLGHQAGDECLKKIAVVLAEATDGTPGLSARYGGEEFALVLPGVREDAALAIADAVRLQV 566

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVC 257
               I   +     +T+S GIA +       T ++  ADQALY AK+ GRN  VC
Sbjct: 567 RALDIANPASDFGCVTVSIGIAIKSPATRNETALLGEADQALYAAKRQGRNCCVC 621


>gi|303325683|ref|ZP_07356126.1| sensory box/GGDEF family protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863599|gb|EFL86530.1| sensory box/GGDEF family protein [Desulfovibrio sp. 3_1_syn3]
          Length = 537

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 62/175 (35%), Positives = 90/175 (51%), Gaps = 6/175 (3%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPV 150
           L    +R   LS +D L+G  N   F + L     +  L+++  D+D FK  ND +GH  
Sbjct: 353 LEQEKDRFRNLSLVDGLTGAGNRRHFDACLARSDRDRPLALLMLDVDMFKLYNDAYGHLA 412

Query: 151 GDKVIAFLSDQ-LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD  +  ++   L  + G+     R GGEEF A   G S  EA  +   LRK I+N +I 
Sbjct: 413 GDSALIAVARTMLEELRGSVDQAFRYGGEEFCALLPGVSAAEALAVGERLRKRIQNLRIP 472

Query: 210 I-SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSDI 261
             SS  + H+T+S G+A R    P+S   +   AD+ALY AK SGRN+V  ++  
Sbjct: 473 HQSSSVAPHLTVSIGVALREAGSPMSNQELTEYADKALYRAKTSGRNQVCFYNPA 527


>gi|238894827|ref|YP_002919561.1| hypothetical protein KP1_2841 [Klebsiella pneumoniae NTUH-K2044]
 gi|238547143|dbj|BAH63494.1| hypothetical protein KP1_2841 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 459

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 90/204 (44%), Gaps = 14/204 (6%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS- 124
           V+  +  ++   I L+L  I    + E       +   +  D L+GLLN   F   + + 
Sbjct: 258 VQTYAGPVVLYNIRLMLCIIH--DITEEVHLKKELEFSAAHDPLTGLLNRREFHHLVEAP 315

Query: 125 --YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                   ++  DID+FK IND  GH  GD+V+  LS  L         + R GGEEF  
Sbjct: 316 TFIPRGYCLLLIDIDHFKSINDIHGHQKGDEVLLVLSRILETSVDREDKIYRWGGEEFLL 375

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
               S    A ILA  +R+ +   Q       ++ +T+S G+AE    E +  +  R D+
Sbjct: 376 FLPHSPIGRALILAEGIRQAVSEYQ-------TLSVTVSIGVAEHHDGETVDQLFSRVDK 428

Query: 243 ALYVAKKSGRNRVVC--FSDIENN 264
           ALY AK  GRNRV    F   E  
Sbjct: 429 ALYAAKNDGRNRVTRMPFDSPERR 452


>gi|254515428|ref|ZP_05127489.1| putative sensory box-containing diguanylate cyclase [gamma
           proteobacterium NOR5-3]
 gi|219677671|gb|EED34036.1| putative sensory box-containing diguanylate cyclase [gamma
           proteobacterium NOR5-3]
          Length = 810

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 12/203 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------S 124
           V+ +++    +  ++ S + E     + I   S+ D L+GL N +     L         
Sbjct: 343 VLFTVSKIDQITVVTFSDISEQKRHEDLIHFRSQHDGLTGLPNRALLSERLEWAMKQARR 402

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
            + ++ + F D+D FK+IND  GH  GD V+   +++L         V RLGG+EFA   
Sbjct: 403 SDWQICVAFLDLDGFKEINDTHGHKAGDAVLRATANRLKNALREVDTVARLGGDEFALVM 462

Query: 185 LGSSEQEAAI-LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRAD 241
                +E++  L   +   +  +      G  + +T S G+             ++ +AD
Sbjct: 463 TELDTRESSSCLLERILHEVRQAIPY--DGQELKVTASIGVTFFAQDSAIDGDQLLRQAD 520

Query: 242 QALYVAKKSGRNRVVCFSDIENN 264
           +A+Y +K SG++    F   +  
Sbjct: 521 KAMYDSKLSGKDCFSTFDPAQEK 543


>gi|26990293|ref|NP_745718.1| GGDEF domain-containing protein [Pseudomonas putida KT2440]
 gi|24985245|gb|AAN69182.1|AE016552_4 GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 695

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 103/213 (48%), Gaps = 14/213 (6%)

Query: 64  ILVENLSLVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +L+  L+++ +++  S+L   L   +  + + L ++   ++QL+  D L+ L N +    
Sbjct: 220 VLITTLAVLAVALLTSVLDARLEARTAELARSLTLANQELTQLALHDTLTDLPNRTLLAD 279

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            +     K        +++F D+D FK +ND FGH +GD ++  ++ +L     +   + 
Sbjct: 280 RIEQAIAKVAEQGGCFALMFIDLDGFKPVNDAFGHHIGDLLLKAVAARLRGHLHSQDTLA 339

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           R+GG+EF          +A  +A  ++++   S+    +   + ++ S GI     + + 
Sbjct: 340 RIGGDEFVLLVELQEPNDAMDVA--VKQVNLVSRPFRVAEHDLQLSASLGIVLYPGNGQD 397

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
              ++  AD A+Y AK +G+N    F D+  N+
Sbjct: 398 QHELLRNADAAMYHAKSAGKNGYSFF-DVSMNS 429


>gi|24373731|ref|NP_717774.1| cyclic nucleotide phosphodiesterase, putative [Shewanella
           oneidensis MR-1]
 gi|24348104|gb|AAN55218.1|AE015659_12 cyclic nucleotide phosphodiesterase, putative [Shewanella
           oneidensis MR-1]
          Length = 320

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 14/189 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQIN 143
            + + L  + +   +L+  D L+ L N  AF    +S      + L+ + FDID FK +N
Sbjct: 127 QMEEALIEAKSTAERLANTDELTKLYNRRAFFNLGLSIAQQSGQALAFIMFDIDRFKHVN 186

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD  +  ++     +      +GRLGGEEF         ++A  LA  +R   
Sbjct: 187 DRWGHTTGDAALIHIAKLTQAILKPVDILGRLGGEEFGILLPDLHHEQACQLAESIRCRF 246

Query: 204 ENSQINISSGPSIHITISAGIA---------ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           E   + + +G  I  T S GIA         E+  +  + T+   ADQA+  AK++GRN+
Sbjct: 247 EEQPLAL-NGQIIKCTASFGIASITIPVIHSEKEAQNLLETLFNSADQAMMQAKRNGRNQ 305

Query: 255 VVCFSDIEN 263
           V   +++ N
Sbjct: 306 VCSATELAN 314


>gi|114320771|ref|YP_742454.1| diguanylate cyclase with PAS/PAC sensor [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227165|gb|ABI56964.1| diguanylate cyclase with PAS/PAC sensor [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 315

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 11/179 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             + E   + +R+  L+R D L+ L N S     L          +  L+++F D+D FK
Sbjct: 132 RDITEWRETLSRLDHLARFDALTDLPNRSELQRQLRKALARASRRSAPLAVLFLDLDGFK 191

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            +ND  GH  GD+++  ++ +L     T   + R+GG+EF          ++A  +A  L
Sbjct: 192 VVNDTLGHSAGDRLLREVAIRLHAATRTGDLLARIGGDEFVLVLEDFHCAEDAGQVARKL 251

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
            + +E  +     G  + +  S GIA         + ++  AD A+Y AK  GR     
Sbjct: 252 IRTLE--RPFKLDGTELRLGASIGIARYPDDGSGPAELVRAADHAMYRAKAGGRGTYRY 308


>gi|329897318|ref|ZP_08272036.1| GGDEF family protein [gamma proteobacterium IMCC3088]
 gi|328921249|gb|EGG28648.1| GGDEF family protein [gamma proteobacterium IMCC3088]
          Length = 472

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 22/221 (9%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGS-----------ILKELFISYNRISQLSRID 107
           Y   + ++     ++++ T+++L+    G+            L EL    +++  LS  D
Sbjct: 250 YQSTWAVLYPYGFLMLAATMAILIANRFGAQVEVLEAAVAVKLAELEDINSKLRSLSERD 309

Query: 108 CLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+ L N         S        N+ + +   DID+FK +ND  GH VGD+V+A  ++
Sbjct: 310 SLTQLDNRRGLEDKARSLLSRPVDVNKPVVVALLDIDHFKLLNDQHGHQVGDQVLAEFAE 369

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS----I 216
           +L     +   VGR GGEEF     G   Q A     +L  +I +         +    +
Sbjct: 370 RLRAFCRSHDLVGRWGGEEFMLILEGLDRQAARARVQELHTMIGSRPFYCEGEAAQTFYV 429

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +T + G+A     +   ++I RAD+ALY  K+ GRN+VV 
Sbjct: 430 DVTATVGVAYYRSDDTFDSVISRADRALYRGKEQGRNQVVY 470


>gi|319795141|ref|YP_004156781.1| diguanylate cyclase with pas/pac sensor [Variovorax paradoxus EPS]
 gi|315597604|gb|ADU38670.1| diguanylate cyclase with PAS/PAC sensor [Variovorax paradoxus EPS]
          Length = 1013

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 85/183 (46%), Gaps = 13/183 (7%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
             +  L    +++ +L+R+D L+GL N  AF                 ++++F DID FK 
Sbjct: 833  DITALKAVESQLIELARLDTLTGLPNRLAFNELLPAALLRAQRTGSAMALMFLDIDAFKT 892

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLR 200
            IND  GH  GD V+   +++L         V RL G+EF         ++AA  +A  + 
Sbjct: 893  INDTLGHASGDSVLVEYANRLRSSVRATDIVARLAGDEFVVVLENLPARDAAAGVAQKIL 952

Query: 201  KIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVC 257
              I      + S P + +T S GIA R   +       ++  AD ALY AK +GRNR   
Sbjct: 953  AQIRAPAFRLDSQP-LQVTTSIGIAFRLGGDAPVTAEELLAHADSALYAAKSAGRNRFE- 1010

Query: 258  FSD 260
            FSD
Sbjct: 1011 FSD 1013


>gi|307304385|ref|ZP_07584136.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sinorhizobium meliloti BL225C]
 gi|306902587|gb|EFN33181.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sinorhizobium meliloti BL225C]
          Length = 1071

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 60/195 (30%), Positives = 91/195 (46%), Gaps = 11/195 (5%)

Query: 78  ISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNE-KLS 130
           IS+    I+     E    ++  +++ ++R D L+GL N   F      +L   N  +++
Sbjct: 622 ISIFCRDITERRRAEEDTLLAQKQMAHMARHDMLTGLANRMFFRECFEEALNESNHARMA 681

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SE 189
           ++  D+D FK +ND  GHP GD ++  +S +L+    T   V RLGG+EFA     + S 
Sbjct: 682 VLCLDLDGFKAVNDTLGHPAGDALLRQVSTRLIQAVRTTETVARLGGDEFAIIQPLTESR 741

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAK 248
            EA  LA  L   +  S+     G S ++  S GIA           +I  AD ALY AK
Sbjct: 742 DEAFRLAQRLIDTL--SEPFSIEGASANVGTSIGIAFAPEDGTSADELIKAADIALYSAK 799

Query: 249 KSGRNRVVCFSDIEN 263
            SGR     F    +
Sbjct: 800 SSGRGTYKLFDVAMH 814


>gi|300691153|ref|YP_003752148.1| diguanylate cyclase (GGDEF domain) [Ralstonia solanacearum PSI07]
 gi|299078213|emb|CBJ50860.1| putative diguanylate cyclase (GGDEF domain) [Ralstonia solanacearum
           PSI07]
          Length = 534

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 10/166 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDK 153
           R++  +  D L+GL N     ++L  +      +  S V  D+D+FK+IND  GH VGD+
Sbjct: 351 RLNHEALTDPLTGLYNRRGVANALRLHAGAGQPQPFSAVTLDVDHFKRINDRNGHDVGDQ 410

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  ++  +          GR+GGEEF     G++   A   A  LR+ +E         
Sbjct: 411 VLKHIAALIREQARHGDITGRIGGEEFIILLPGATPDGAFKTAERLRRAVEARPNPTGQ- 469

Query: 214 PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
               +T+S G+A        +  ++  +D ALY AK++GRNR V +
Sbjct: 470 ---VVTVSLGVAHYPLSSGEVDAVLKLSDLALYQAKRNGRNRTVLY 512


>gi|296534761|ref|ZP_06897129.1| exopolyphosphatase [Roseomonas cervicalis ATCC 49957]
 gi|296264912|gb|EFH11169.1| exopolyphosphatase [Roseomonas cervicalis ATCC 49957]
          Length = 686

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 6/187 (3%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQ 141
            +S   + EL  +  +   L+  D L+GL N ++   +     +   ++++F D+D FK 
Sbjct: 234 LVSEVDVSELKEAERKADFLASHDVLTGLPNRASLHPAFARLRQGGGVALMFIDLDGFKH 293

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLR 200
           +ND FGHPVGD+++  ++ +L  +      V RLGG+EF           E   +A  LR
Sbjct: 294 VNDAFGHPVGDRLLVEVARRLRGLLRAEDEVLRLGGDEFLLLLRRHGQPGEVESVAERLR 353

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + + +  I  ++G  + +T S GI+    H   +  +  RAD ALY AK +GR+    F+
Sbjct: 354 EAL-SLPIE-TAGQRLQVTPSIGISLCPEHGTDVDELAKRADLALYEAKAAGRDGWCYFA 411

Query: 260 DIENNTC 266
              +   
Sbjct: 412 AEMDRRA 418


>gi|241766210|ref|ZP_04764110.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
 gi|241363709|gb|EER59086.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
          Length = 589

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 79/191 (41%), Gaps = 16/191 (8%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
              + E  +S  R   L+  D L+GL N    +  +           +  +++F D+D F
Sbjct: 143 SRDITERKLSEARTYHLAYFDALTGLPNRRMLLDRMERSLDAARRAGQVGALLFIDLDNF 202

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG------SSEQEAA 193
           KQIND  GH +GD ++  ++ +LV +      V RLGG+EF             +   A 
Sbjct: 203 KQINDARGHSLGDLLLVQVAQRLVDLLAPGDIVARLGGDEFVVLVHDLAGGMQDAGPAAM 262

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
            +A  LR  +E              T S GI       E +  ++  AD A+Y AK  GR
Sbjct: 263 AVAETLRVALEA--PYTIHQHLYSSTASIGITLFPKPDEGVEDLLREADTAMYRAKDLGR 320

Query: 253 NRVVCFSDIEN 263
           NR+  +     
Sbjct: 321 NRIRFYEAAMQ 331


>gi|255606612|ref|XP_002538597.1| protein with unknown function [Ricinus communis]
 gi|223511408|gb|EEF23786.1| protein with unknown function [Ricinus communis]
          Length = 248

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 98/186 (52%), Gaps = 8/186 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           +   +++L     ++S++ RID L+G+LN      +            E LS+   DID 
Sbjct: 63  TQQRMEKLQEELQQLSEVVRIDQLTGVLNRRGMDEAFSTEIARYRRSGELLSVALLDIDN 122

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND  GH  GD  +  L+  +         V R+GGEEF      ++ +EA +  + 
Sbjct: 123 FKMLNDQHGHAAGDSALKHLASVVKRAVRPTDIVTRMGGEEFVVILPNTNLEEAVVTMSR 182

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           L++ +   +  + +   + IT SAG+A    ++ +++I+ RADQA+Y+AKK G+NRV+  
Sbjct: 183 LQRAL-TKEYFLGNNQKLLITFSAGVALFKTEDDVNSILSRADQAMYLAKKRGKNRVMTE 241

Query: 259 SDIENN 264
            D++ N
Sbjct: 242 VDLQAN 247


>gi|209809677|ref|YP_002265216.1| putative GGDEF protein [Aliivibrio salmonicida LFI1238]
 gi|208011240|emb|CAQ81675.1| putative GGDEF protein [Aliivibrio salmonicida LFI1238]
          Length = 322

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 72/214 (33%), Positives = 105/214 (49%), Gaps = 17/214 (7%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112
           I  +P   L   L  ++SLVI  +T       I+ + L  L  S  ++S LS+ D L+ L
Sbjct: 113 ITFSPLTSLNG-LASHVSLVINDVT------DIAKNKLH-LQESNQQLSNLSKTDGLTNL 164

Query: 113 LNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N + + S L    E         SIV FDID+FKQ+ND +GH VGD VI   SD L   
Sbjct: 165 FNRAYWESCLKKEFETAQVSGAVSSIVIFDIDHFKQVNDTYGHTVGDDVIRNASDLLRKT 224

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                  GR GGEEF     G++ ++A      LRK IE + + +    ++   +S G+ 
Sbjct: 225 SRNTDICGRYGGEEFTVILPGTNAEQALYFTERLRKRIEKA-VVVCEKANVSYQVSLGVC 283

Query: 226 E-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           E         + +  AD+ALY +K++GRNR   +
Sbjct: 284 ELAPEHTDYLSWLEMADKALYHSKENGRNRSTVY 317


>gi|153828805|ref|ZP_01981472.1| sensory box/GGDEF family protein [Vibrio cholerae 623-39]
 gi|148875681|gb|EDL73816.1| sensory box/GGDEF family protein [Vibrio cholerae 623-39]
          Length = 579

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 11/179 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +LS +D L+ + N   F   L           + LSI+  D+DYFK  N
Sbjct: 397 EQLEAANQELERLSFLDSLTHVANRRRFDEQLHTLWHLHVREGKPLSIILCDVDYFKDYN 456

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH +GD+ +  ++     V       V R GGEEF      + +  A ++A  + + 
Sbjct: 457 DAYGHLMGDETLKQIAIAFTQVANRHSDCVARYGGEEFGILLPNTPQAGAILVAERIHEK 516

Query: 203 IENSQINISSGPSI-HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +    I          IT+S GI       ++    ++  AD+ALY AK +GRN+   +
Sbjct: 517 VRGLAIPHDHSKVADRITVSLGIVTLIPRPEDVPEQMVELADRALYQAKANGRNQTSIY 575


>gi|77918947|ref|YP_356762.1| EAL and GGDEF domain-containing protein [Pelobacter carbinolicus
           DSM 2380]
 gi|77545030|gb|ABA88592.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pelobacter carbinolicus DSM 2380]
          Length = 1274

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 95/211 (45%), Gaps = 13/211 (6%)

Query: 64  ILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  E+ S+  +      ++ +I     + +  ++  R+  ++  D L+GL N +     L
Sbjct: 771 IFWESASISPLFDESGKIINFIGVKEDITQRKLNEKRLEYMATHDGLTGLANRTLLYDHL 830

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                      + ++++  D+D FK IND+ GH VGD+V+  +  +L     +   V RL
Sbjct: 831 EIALHQSQRSKKLVAVILLDLDRFKVINDSLGHLVGDQVLKAVGQRLKQYVRSTDTVARL 890

Query: 176 GGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PI 233
           GG+EF        +  AA  +A++L + +  ++     G  ++++ S GI          
Sbjct: 891 GGDEFVVLLTDVRDTTAAGKIAHNLLRKL--NEPFFLHGRELYVSASFGICLSETDNVDG 948

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           + ++  AD A+Y AK  G   +  +S   N 
Sbjct: 949 TILLRNADIAMYKAKAEGCG-LYFYSHEMNE 978


>gi|209549403|ref|YP_002281320.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535159|gb|ACI55094.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 391

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 110/234 (47%), Gaps = 15/234 (6%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS 86
           F +  +IF +  ++ ++ +   F     L P Y    +++ + ++ +  + +        
Sbjct: 153 FGLSAAIFVATSLSALVVLGFTFPNDAPLPPRYAFFLLIICHFAVALFVLVLV------- 205

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-SIVFFDIDYFKQINDN 145
                    +  ++++L+  D L+G+ N   F SSL        + V  DID+FK +ND 
Sbjct: 206 ------QERAEEKLTRLANTDMLTGVPNRQHFFSSLPKSLGPGDAFVLIDIDFFKSVNDR 259

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GD V+  ++  +          GRLGGEEF+    G +E  A  LA  +R+ +  
Sbjct: 260 FGHDRGDIVLVDVARTIARSIPPSSVFGRLGGEEFSLFVRGETEASAFALAEQIREAVNT 319

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             + +  G  +  T+SAG+A          I  RADQALY AK +GRNRV  F+
Sbjct: 320 LDL-VFEGKQVSTTVSAGVALWEANLTEQDIQKRADQALYSAKNNGRNRVELFT 372


>gi|149374817|ref|ZP_01892590.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter algicola DG893]
 gi|149360706|gb|EDM49157.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter algicola DG893]
          Length = 554

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 17/215 (7%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           +YI+ +NLS +I +I   +  G++  +      ++ N +  ++  D L+ L+N   F   
Sbjct: 97  DYIMKDNLSRLIPAIDREVREGFMRQAK----RVAENALEHMAYHDSLTDLVNRREFERR 152

Query: 122 L-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L               +++ D+D FK IND  GH  GD ++  ++  L +   +   + R
Sbjct: 153 LVQALEDTHKTGRHHVLLYLDLDQFKIINDTCGHVAGDYLLKQVAALLSLQIRSDDTLAR 212

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPI 233
           LGG+EF     G     A  +A  L +++   +    + P   +++S G +    +    
Sbjct: 213 LGGDEFGVLLRGCDAVHAHKVAEKLCEVVHEFRFVWQNKP-FSVSLSIGMVVINENYNSA 271

Query: 234 STIIYRADQALYVAKKSGRNRVVCF----SDIENN 264
             ++  AD A Y AK  GRN V  +    SD++  
Sbjct: 272 GELLSHADLACYAAKDRGRNNVQLYETDDSDMQQR 306


>gi|91201909|emb|CAJ74969.1| hypothetical protein kuste4207 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 511

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 108/233 (46%), Gaps = 20/233 (8%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVE-NLSLVIISITISLLLGYISGSIL------KELF 94
           V+  AN F FYI       +E IL+E N  L  I++T   +   +  + +      +EL 
Sbjct: 276 VVHNANYFGFYIKKP--KSIEEILIEANTILSGINLTYDQMNKELVNAKIQMQKAARELE 333

Query: 95  ISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
           I    +  L+ ID L+ + NH          L     K     ++  D+D FK+ NDN+G
Sbjct: 334 IKNKWLESLANIDGLTEVYNHRYLQIFLERELNRTKRKKGVFCLIMLDVDNFKKFNDNYG 393

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD ++  L D L     T   + R GGEEFA     S  + A I+A  LR+ +    
Sbjct: 394 HQAGDFILKELCDLLKKGIRTYDILARYGGEEFAIVLPESDLEGALIVAERLRQRVAEH- 452

Query: 208 INISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +     +TIS G+AE          S +I RAD+AL  +KK+G+NR+  
Sbjct: 453 VFADNKEQYKVTISIGVAETKPSIDNLNRSGLIGRADKALLESKKNGKNRITA 505


>gi|226228483|ref|YP_002762589.1| hypothetical protein GAU_3077 [Gemmatimonas aurantiaca T-27]
 gi|226091674|dbj|BAH40119.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 556

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 87/184 (47%), Gaps = 11/184 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYF 139
             + E      R+   +  D L+GL N + F   L           + +++++F D+D F
Sbjct: 97  RDVTERKELEARLLHGAFHDALTGLANRALFRDRLEHALQVAGRDPDHRIAVLFLDLDDF 156

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K +ND+ GH  GD+++  +S++++        V R GG+EFA       +E EA  + N 
Sbjct: 157 KGVNDSLGHDAGDQLLRTVSERIMAEVRASDTVARFGGDEFAVLLERLPTESEALTIVNR 216

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           ++  +   +  +  G  + +  S G+A     + + T++  AD A+Y AK++G+ R   F
Sbjct: 217 IK--VALRRPLMLEGRLMSVATSVGVAYATPADDVDTLLRNADVAMYEAKEAGKARHAVF 274

Query: 259 SDIE 262
               
Sbjct: 275 EPSM 278


>gi|171059444|ref|YP_001791793.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Leptothrix cholodnii SP-6]
 gi|170776889|gb|ACB35028.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptothrix cholodnii SP-6]
          Length = 751

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 80/189 (42%), Gaps = 11/189 (5%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFD 135
             ++ S + E   + +++   +  D L+GL N +     L             ++++F D
Sbjct: 275 AVLALSDVTEALRAADKLQHEATHDALTGLPNRALLSDRLQHAVLGAQAGQRSVAVLFID 334

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D FK+IND+ GH  GD V+  ++ +L         + R GG+EF         ++A  +
Sbjct: 335 LDRFKRINDSLGHRHGDAVLKEVASRLQQCCRAHDTLARWGGDEFVVLLEDVPSRDA--V 392

Query: 196 ANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253
           A    ++I++  +  +     +    S GIA        +  ++  AD A+Y  K  G  
Sbjct: 393 AARAAQMIDSVTLEFAIDQVEVACGCSIGIAMAPQDGVAVDALLAMADTAMYRGKSRGGK 452

Query: 254 RVVCFSDIE 262
           R   ++   
Sbjct: 453 RFEFYASEM 461


>gi|91782791|ref|YP_557997.1| putative diguanylate cyclase (GGDEF)/ phosphodiesterase (EAL) with
           PAS/PAC and Chase sensors [Burkholderia xenovorans
           LB400]
 gi|91686745|gb|ABE29945.1| Putative diguanylate cyclase (GGDEF)/ phosphodiesterase (EAL) with
           PAS/PAC and Chase sensors [Burkholderia xenovorans
           LB400]
          Length = 929

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 93/217 (42%), Gaps = 17/217 (7%)

Query: 64  ILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +L  +LS V IS      +G+  SG  + E   S  +I +L+  D L+ L N +  +  L
Sbjct: 434 LLWLSLSWVPISNARGDFVGFRTSGRDITERKKSEEKIRELAFYDTLTRLPNRALLLDRL 493

Query: 123 GSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     N   +++F D+D+FK +ND  GH  GD ++  ++ +L         V R+
Sbjct: 494 RESMAASRENNVCGALMFIDLDHFKTLNDTLGHDKGDLLLRHVAYRLSSSVSKGDTVARV 553

Query: 176 GGEEFAAAALGSSEQEAAILA------NDLRKIIENSQINISSGPSIHITISAGIAER-C 228
           GG+EF       S  +AA  A        +  ++  +     +G     T S G+     
Sbjct: 554 GGDEFVVVLGNLSLNKAAATAETEAAGEKILAVLGRA--YELNGVQFRSTASIGVTVFNG 611

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            +     +  +AD A+Y +K+ GRN +  F      T
Sbjct: 612 EQTSTDELFKQADLAMYKSKERGRNAMCFFDPAMQTT 648


>gi|22298454|ref|NP_681701.1| hypothetical protein tlr0911 [Thermosynechococcus elongatus BP-1]
 gi|22294634|dbj|BAC08463.1| tlr0911 [Thermosynechococcus elongatus BP-1]
          Length = 1240

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 11/191 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDY 138
           G  +        ++   +  D L+GL N +     L           +   ++VF DID 
Sbjct: 798 GRDITCRKQMEEQLIHDALHDALTGLPNRTLLQERLKHCWRQYQRRRDRPFAVVFIDIDR 857

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++ND+ GH  GD+++  L+ ++  V      + RL G+EF         Q+       
Sbjct: 858 FKRVNDSLGHQAGDQLLITLAQRMQTVVRQGDTLARLSGDEFVVLCEDLDPQQMVAQVQA 917

Query: 199 LRKIIEN--SQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               +E    +  I  G  + ++ S G+A         +T++  AD A+Y AKK G  + 
Sbjct: 918 QVTDLERVIQEPLIIDGHLLSVSASIGVAFSDREATSAATLLRDADIAMYQAKKQGLGQW 977

Query: 256 VCFSDIENNTC 266
             F    +   
Sbjct: 978 CIFDPQMHTQA 988


>gi|332994949|gb|AEF05004.1| response regulator/GGDEF domain-containing protein [Alteromonas sp.
           SN2]
          Length = 418

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 7/175 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFG 147
           E   S   I + +  D L+GL N   F  ++        E+ ++   D+D+FK+IND +G
Sbjct: 245 EYIESVEAIRRAANTDYLTGLPNRRHFFYTVTVQYKKLPEQHALALIDLDHFKRINDTYG 304

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  +++ L  V      V R GGEEF           A    N  R  ++ + 
Sbjct: 305 HDAGDLVLKAVANLLQ-VHFNDTLVARFGGEEFCVYLPKIDIHNAQERLNRFRLALQKTP 363

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           I I    S+ +T S G+      + I T++  AD+ LY AK +GRN+V   S+ +
Sbjct: 364 IQIGE-ESVKVTCSIGLC-NTPTQNIETLLSSADKLLYKAKNAGRNQVHVTSETQ 416


>gi|332534442|ref|ZP_08410281.1| putative two-component response regulator [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036095|gb|EGI72571.1| putative two-component response regulator [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 299

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 57/190 (30%), Positives = 89/190 (46%), Gaps = 13/190 (6%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSI 131
           S++   +   +L  +    + +  L+ ID L+ + N      +L             LS+
Sbjct: 111 SIVRVRVRNQLL--IKQKNDLLEMLASIDGLTEIPNRRYLDENLAREWRRSKRSGTPLSV 168

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +  DID+FK+ ND +GH  GD+ +  ++  L         F+ R GGEEFAA   G  + 
Sbjct: 169 LLMDIDHFKRYNDCYGHRAGDECLKDVAQALAAQCERGSDFIARYGGEEFAAVLPGIDKH 228

Query: 191 EAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPIST--IIYRADQALYVA 247
           EA   AN LR  +    I   +  +  HITIS GIA     +  +   ++  AD  LY A
Sbjct: 229 EALEFANKLRNAVNALNIEHKASLNADHITISIGIATTQSGKVYAEQALLEEADLGLYAA 288

Query: 248 KKSGRNRVVC 257
           K +GR+R+V 
Sbjct: 289 KDAGRDRIVA 298


>gi|190573223|ref|YP_001971068.1| putative transmembrane GGDEF domain signalling protein
           [Stenotrophomonas maltophilia K279a]
 gi|190011145|emb|CAQ44754.1| putative transmembrane GGDEF domain signalling protein
           [Stenotrophomonas maltophilia K279a]
          Length = 350

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 104/243 (42%), Gaps = 23/243 (9%)

Query: 32  SIFFSIFIATVIFIANI---------FLFYIGLTPFY-GLEYILVENLSLVIISITISLL 81
           ++F ++ +A  I    +          L    LT +  G  Y  V +   +++S+    +
Sbjct: 104 ALFAALLVADKIAAGGVRLAMRATLALLLGFALTWWLLGFPYQPVASQRTIVLSVPFLFV 163

Query: 82  ----LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------S 130
               L  +S  + + +     ++ +LSR+D L  L N    I       +K         
Sbjct: 164 YGIGLSILSWQLARRVKSQNRQLQRLSRMDPLVELANRGFLILRAQQALDKAQGQGSFAC 223

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D FK+IND+ GH  GD+V+  ++  L           RLGG+EF       +  
Sbjct: 224 LLMLDVDDFKRINDSHGHRAGDEVLRHIAATLRTFARPGDTPARLGGDEFVVLLRDCAPV 283

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +A  LA  +R  +   +    + P +  ++S GIA       +   +  AD+ALY AK+ 
Sbjct: 284 DAMRLAERVR--LHLLEAARQATPGVEFSVSIGIAATPRGGSVEDWLALADRALYHAKRQ 341

Query: 251 GRN 253
           G+N
Sbjct: 342 GKN 344


>gi|153825916|ref|ZP_01978583.1| sensory box/GGDEF family protein [Vibrio cholerae MZO-2]
 gi|149740414|gb|EDM54545.1| sensory box/GGDEF family protein [Vibrio cholerae MZO-2]
          Length = 579

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 11/179 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +LS +D L+ + N   F   L           + LSI+  D+DYFK  N
Sbjct: 397 EQLEAANQELERLSFLDSLTHVANRRRFDEQLHTLWHLHVREGKPLSIILCDVDYFKDYN 456

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH +GD+ +  ++     V       V R GGEEF      + +  A ++A  + + 
Sbjct: 457 DAYGHLMGDETLKQIAIAFTQVANRHSDCVARYGGEEFGILLPNTPQAGAILVAERIHEK 516

Query: 203 IENSQINISSGPSI-HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +    I          IT+S GI       ++    ++  AD+ALY AK +GRN+   +
Sbjct: 517 VRGLAIPHDHSKVADRITVSLGIVTLIPRPEDVPEQMVELADRALYQAKANGRNQTSIY 575


>gi|229916749|ref|YP_002885395.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
 gi|229468178|gb|ACQ69950.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
          Length = 378

 Score =  184 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 21/230 (9%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL-------KELFISY 97
           +  I L  I L  F        E  S  +I++   L +GY +G  L       +++  S 
Sbjct: 142 VNMISLTCIAL--FSAFNMANYEEPSAYVITLIWFLFIGYATGLFLHIVYGGIRKIERSR 199

Query: 98  N---RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFG 147
               +  + +  D L+GL N   F   +   +E++       +++  DID+FK +ND +G
Sbjct: 200 RLITKYKEAAYTDTLTGLGNRRQFDEEMKRVDEEVFTSPHEIALLLIDIDHFKSVNDTYG 259

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD ++  L  +L  +      V R GGEEF+      +  +A  +AN     +    
Sbjct: 260 HDAGDAILVELGQRLSGIARADDMVCRNGGEEFSVLLADCNLPQAISIANRYLTEVSKQP 319

Query: 208 INISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
             +     + +TIS G++    ++    + +I +AD  LYVAK++GRNR+
Sbjct: 320 FQLPDEAMLDVTISIGVSSTSERKVITSAQLIKKADIGLYVAKRNGRNRI 369


>gi|297582891|ref|YP_003698671.1| 7TM domain sensor diguanylate cyclase [Bacillus selenitireducens
           MLS10]
 gi|297141348|gb|ADH98105.1| 7TM domain sensor diguanylate cyclase [Bacillus selenitireducens
           MLS10]
          Length = 610

 Score =  184 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 77/278 (27%), Positives = 125/278 (44%), Gaps = 21/278 (7%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60
           +T     ++ I     K + +    T  ++ +  ++I I   I        Y  L+P   
Sbjct: 337 ITVGYICYILILAALRKRMGA----TVSLFMAFLYAITIVNDILYDYQLSIYGNLSPAGL 392

Query: 61  LEYILVENLSLVIISITISLLLGYISGSIL-------KELFISYNRISQLSRIDCLSGLL 113
           L +IL ++  L  I       L  +S  ++        ++     ++  LS  D L+ + 
Sbjct: 393 LFFILAQSFMLASIFSKAFTDLEDMSERLIASNEILESKVEERTKKLKDLSVRDPLTNVY 452

Query: 114 NHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N   F   +           ++LS++F DIDYFK+ ND +GH  GD+ +  ++  L    
Sbjct: 453 NRGGFDQQMKAKWTEALQERKELSLLFVDIDYFKRYNDEYGHQAGDQTLISVAHTLQEAL 512

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIA 225
           G    V R GGEEF     G+SE++AA  A  L K I + QI  S    + ++T+S G  
Sbjct: 513 GEKAIVSRYGGEEFVLILPGASEEQAASAAATLLKAIRDQQIPHSQSQVAPYVTVSIGGI 572

Query: 226 ERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            R   E       I +ADQALY AK++GR+R +   D+
Sbjct: 573 SRIPNETDKPDAFIKQADQALYAAKEAGRDRYILAQDV 610


>gi|238755649|ref|ZP_04616985.1| hypothetical protein yruck0001_12010 [Yersinia ruckeri ATCC 29473]
 gi|238706162|gb|EEP98543.1| hypothetical protein yruck0001_12010 [Yersinia ruckeri ATCC 29473]
          Length = 463

 Score =  184 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 11/187 (5%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIV 132
           + + Y S   + EL  S + +  L++ D L+G+ N   F            S  E LS++
Sbjct: 272 ITVWYGSFFDITELKQSESILKALAQTDVLTGVANRRHFDEIYRQTWQMSQSSGESLSVL 331

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQE 191
             D D FK  ND +GH  GD  +  + + L          + R GGEEF       + +E
Sbjct: 332 MIDFDNFKSFNDLYGHGRGDICLKLVVETLSSAIRENTDVLARYGGEEFIVLLSPCNSEE 391

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCH---KEPISTIIYRADQALYVAK 248
           A ++A  +R  IE   I  +  P   +TIS G+A           + +   AD+ALY AK
Sbjct: 392 AWLVAERMRYSIEKLDIPHAVSPKGKVTISIGVATIVPTLGGLTPAEVSDCADKALYRAK 451

Query: 249 KSGRNRV 255
            +G+NRV
Sbjct: 452 IAGKNRV 458


>gi|320450304|ref|YP_004202400.1| diguanylate cyclase/phosphodiesterase with FHA and GAF sensor
           [Thermus scotoductus SA-01]
 gi|320150473|gb|ADW21851.1| diguanylate cyclase/phosphodiesterase with FHA and GAF sensor
           [Thermus scotoductus SA-01]
          Length = 754

 Score =  184 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 10/186 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVF 133
           L   I    + E  ++  +   L+  D L+ L N  AF+                L +  
Sbjct: 309 LAAEIVAQAI-ERVLAQEKALYLAYHDPLTDLPNRRAFLERLEEHLLLAQREGWSLVVGL 367

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FKQ+ND +GH VGD ++A ++ +L         V RLGG+EFA          AA
Sbjct: 368 LDLDGFKQVNDRYGHAVGDWLLAQVARRLRSAVRASDGVARLGGDEFAFLLPHLDPVSAA 427

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252
           ++A  L   +            + +  S G+A      +  S ++  AD ALY AK  G 
Sbjct: 428 VVAERLLAAVRRPHNPPGLERRLSVRASLGLALYPQDAQDPSGLLQAADLALYQAKVHG- 486

Query: 253 NRVVCF 258
           +R   F
Sbjct: 487 DRYALF 492


>gi|300313424|ref|YP_003777516.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1]
 gi|300076209|gb|ADJ65608.1| GGDEF domain containing protein [Herbaspirillum seropedicae SmR1]
          Length = 372

 Score =  184 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 67/264 (25%), Positives = 111/264 (42%), Gaps = 27/264 (10%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANI----FLFYIGLTPFYGLEYILVEN 68
           L          P+   ++  +F      +V  +  +     L Y+ L   YG      E 
Sbjct: 113 LTRADEKPRLGPYVAALHGPLFPHYEPVSVAVLPLVRQHRLLGYLALGSAYG------ER 166

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125
            +  + +  I  L      ++  E  I+  R+  +   D L+G+ N       +      
Sbjct: 167 FTRSLATDFIERLATI--AAVCLENVINNERLKHIGLTDPLTGVNNRRYIEQRMQEEVAR 224

Query: 126 ----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                  LS +F DID+FK++ND FGH  GD V+  ++ ++         +GR GGEEF 
Sbjct: 225 SQRDRSALSCLFIDIDHFKRVNDQFGHQSGDDVLREVAARIKKELRLSDALGRFGGEEFV 284

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIA-------ERCHKEPI 233
                ++ ++AA +A  +R  + +  + I      + IT S G A        R   E  
Sbjct: 285 VLLTHATREDAARIAERIRAGVCSRGVMIEGSRDPLKITASIGAAALTPPDRSRPAAEVK 344

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
             ++  ADQALY AK++GRNRV+ 
Sbjct: 345 QAMLKAADQALYQAKEAGRNRVML 368


>gi|268608109|ref|ZP_06141837.1| diguanylate cyclase/phosphodiesterase [Ruminococcus flavefaciens
           FD-1]
          Length = 503

 Score =  184 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 93/206 (45%), Gaps = 12/206 (5%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           IL+  +   ++ I I+L + +       E    + R   LS  D L+ ++N  AF +   
Sbjct: 301 ILISIIVFALVIILIALAMIWFLHKRESEEKEVFER---LSTYDPLTHIMNRRAFDARAQ 357

Query: 124 SY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                   EK + +F DID+FKQ+ND +GH  GD+++   S  L   FG      R GG+
Sbjct: 358 KLLEKPKQEKYTFMFVDIDFFKQVNDRYGHEAGDRLLKEFSIALRNTFGRCGLTARYGGD 417

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS---IHITISAGIAERCHKE-PIS 234
           EF     G +  E   + ++LR  +    I+          H+  SAGIA         +
Sbjct: 418 EFVVLIKGKTRSEVNKMVDELRYTLGRIIIDDPQSTEEERFHVHFSAGIAVYPDDARSFA 477

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSD 260
            ++  AD ALY  K++GRN    F +
Sbjct: 478 QLLRCADDALYKVKEAGRNGYRWFGE 503


>gi|156975277|ref|YP_001446184.1| hypothetical protein VIBHAR_03006 [Vibrio harveyi ATCC BAA-1116]
 gi|156526871|gb|ABU71957.1| hypothetical protein VIBHAR_03006 [Vibrio harveyi ATCC BAA-1116]
          Length = 520

 Score =  184 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/161 (32%), Positives = 86/161 (53%), Gaps = 8/161 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +++   +  D L+GLLN      ++  ++      S++  DIDYFK+IND +GH  GD +
Sbjct: 357 DQLHLDTLTDSLTGLLNRRGIDKAIEDFHSQSIPFSVLALDIDYFKRINDTYGHDTGDIL 416

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +A L+  +         V R GGEEF      ++  +A  ++  +R+ +E+ + +     
Sbjct: 417 LARLAKLIKAQARDVDTVCRCGGEEFLVFLRNTNMSQAKCISERIRRSVESHEYDGIG-- 474

Query: 215 SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
             ++TIS GIA      E I+ +I  AD ALY AK++GRNR
Sbjct: 475 --NVTISIGIAHWDGEGELINRVIKNADDALYQAKRNGRNR 513


>gi|297579178|ref|ZP_06941106.1| GGDEF family protein [Vibrio cholerae RC385]
 gi|297536772|gb|EFH75605.1| GGDEF family protein [Vibrio cholerae RC385]
          Length = 353

 Score =  184 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 112/258 (43%), Gaps = 29/258 (11%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           IW C       F P  F I+ S  F+   + +  I    + Y          + L +  +
Sbjct: 98  IWSC-------FVPILFYIFTSARFAFVTSCLFLIIQSNIIY----------WQLQQTGA 140

Query: 71  LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAF---ISSL 122
            +  S+ + L   YI   ++  ++    R     +  L+  D L+G  N  +        
Sbjct: 141 AISWSVLLHLCFAYIGIWVVAHVYEDNRRKIENSLLYLASRDPLTGAHNRLSLTTSFQHF 200

Query: 123 GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
             +N++  L ++  D+D+FK IND FGH  GDKV+   +     V G    + R+GGEEF
Sbjct: 201 ERFNDQTSLCLLVIDLDFFKSINDQFGHDTGDKVLIETTRLFAQVVGDNN-LYRIGGEEF 259

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                  S ++A  +   LR I+            + +TIS G+ E    + ++ ++  A
Sbjct: 260 CVTLFDQSLEQAGRVCERLRTIVSQHLFAFGE-KRVQVTISIGVCEYQAGDQLNDLLKFA 318

Query: 241 DQALYVAKKSGRNRVVCF 258
           D  LY AKK+GRN+V  F
Sbjct: 319 DMELYRAKKAGRNQVRLF 336


>gi|283834300|ref|ZP_06354041.1| YaiC/YhcK/ArdA family protein [Citrobacter youngae ATCC 29220]
 gi|291069828|gb|EFE07937.1| YaiC/YhcK/ArdA family protein [Citrobacter youngae ATCC 29220]
          Length = 366

 Score =  184 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 106/228 (46%), Gaps = 13/228 (5%)

Query: 37  IFIATVIFIANIFLFYIGLT--PFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           +F+A  + +A   L  + L   P       L   LSL ++ +   LL  ++S   +  L 
Sbjct: 137 VFLAGAVLMAVACLVTLQLANIPVAVNSSQLNVALSLPVL-VIYPLLFAWVSYQAITRLA 195

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFG 147
               R+  +S  D ++G+ N   +         +   Y    +++  DID+FK IND +G
Sbjct: 196 EHKRRLQVMSTRDGMTGVYNRRHWELLLRNEFDNCRRYQRDATLLIIDIDHFKSINDTWG 255

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD+ I  L+ QL +       +GR GG+EFA    G+    A    + + + +  SQ
Sbjct: 256 HDVGDQAIVALTRQLQMTLRGSDVIGRFGGDEFAVIMCGTPATSAIAAMSRVHERL--SQ 313

Query: 208 INISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNR 254
           + +S  P + + IS G+A      E     +  AD ALY AK SGRNR
Sbjct: 314 LRLSCAPQVALRISVGVAPLTSETEHYREWLKSADMALYKAKNSGRNR 361


>gi|300023463|ref|YP_003756074.1| diguanylate cyclase/phosphodiesterase [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525284|gb|ADJ23753.1| diguanylate cyclase/phosphodiesterase [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 625

 Score =  184 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 85/184 (46%), Gaps = 13/184 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQI 142
            + E   +  +I  L+R D L+ + N   F  +L         ++ L++ + D+D FK +
Sbjct: 175 DITERRQAEQKIHWLARHDPLTEIANRLQFHEALDEALRNLAPSQTLALHWIDLDGFKTV 234

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS---SEQEAAILANDL 199
           ND  GHPVGD ++  ++  L         V RLGG+EFA     S    + +A  +A  L
Sbjct: 235 NDTLGHPVGDALLKSVAKSLKRAVRKNDIVARLGGDEFAVLQSASRVVRKADAERMAQRL 294

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            K I   + +   G  +  + S GIA    H +    ++  AD ALY AK  G+  +  F
Sbjct: 295 LKEI--CKPHDLGGQQVSCSASIGIAFAPLHGQTAEQLLKAADLALYKAKAGGKG-IAFF 351

Query: 259 SDIE 262
            D +
Sbjct: 352 YDPD 355


>gi|254417659|ref|ZP_05031392.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196175551|gb|EDX70582.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 776

 Score =  184 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 20/220 (9%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           + EN   V   +T  LL    +   + E  ++ +++   +  D L+GL N + F+  L  
Sbjct: 279 IAENARAVRDMMTGELLYYEGTVEDITEHKLAKDQLQTRAFYDTLTGLPNRALFMDRLSH 338

Query: 125 YNEK--------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
             E+         +++F D+D FK +ND+ GH VGD+++  ++ +L     T   V RLG
Sbjct: 339 TVERAKRHPTYRFALLFLDLDRFKVVNDSLGHLVGDQLLIGIARRLESCLRTEDTVARLG 398

Query: 177 GEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER-------- 227
           G+EF            A  +A  +++  E +      G  +    S GI           
Sbjct: 399 GDEFTILLEDIEDIHHATRVAERIQQ--ELAAPFNLDGHEVFTGASVGIVLSREIRKEGD 456

Query: 228 -CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             + +    ++  AD ALY AK  GR+R   F    +   
Sbjct: 457 ITNYDCPEDLLRDADTALYRAKALGRSRYEIFDLTMHQNA 496


>gi|120602704|ref|YP_967104.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Desulfovibrio vulgaris DP4]
 gi|120562933|gb|ABM28677.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris DP4]
          Length = 997

 Score =  184 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 12/176 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQINDN 145
             S  +++  +  D L+GL N   F+  L           +   ++++ D+D FK IND+
Sbjct: 546 HRSRQQLAHQAYHDPLTGLPNRLLFLDHLQLAMQRAARRADAMFTVLYLDLDRFKIINDS 605

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIE 204
            GH +GD ++  ++  L         V R GG+EFA     + +   A  +A  +R+ + 
Sbjct: 606 LGHGIGDALLREVACTLRRCVRDVDTVARFGGDEFAILLEDTGNCAGAVRIARRIRESLA 665

Query: 205 NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
             Q    +G  +  T S GI  +         I+  AD A+Y AK+ G++R   F+
Sbjct: 666 --QPVNIAGHEVFTTASIGIVLQTRDYLTPEDILRDADTAMYRAKEMGKSRFKVFN 719


>gi|329910008|ref|ZP_08275190.1| hypothetical protein IMCC9480_42 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546318|gb|EGF31340.1| hypothetical protein IMCC9480_42 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 1185

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 8/180 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + E      +++ L+  D L+GLLN   F   L          +++ ++++ D+D FK 
Sbjct: 751 DVSEAHKMAEQMTHLAAHDALTGLLNRREFEHRLEQAVASASRDSQEHTVMYLDLDQFKI 810

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD+++  L+  L         + RLGG+EF           A  +A  LR+
Sbjct: 811 VNDTCGHVAGDELLRQLTTLLHAKLRQSDTLARLGGDEFGVLLEQCGTAPALRVAEQLRQ 870

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            + +    +    S  I +S G+           I+  AD A YVAK  GRNRV  +S+ 
Sbjct: 871 TVSDFHF-VWLDKSFPIGVSIGLVTFGAGMTTPDILRMADSACYVAKDKGRNRVHVYSEE 929


>gi|311696943|gb|ADP99816.1| response regulator [marine bacterium HP15]
          Length = 317

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 76/159 (47%), Gaps = 9/159 (5%)

Query: 107 DCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N  AF                 L+I+ FD+D+FK+INDN GH  GD+V+  + 
Sbjct: 158 DDLTGLHNRRAFFELGNQLLKQTRRNGSPLAIIMFDLDHFKKINDNHGHDAGDEVLRHVG 217

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L+          R+GGEEFA     +   +A+ LA  L  ++  + +       I  T
Sbjct: 218 RVLMSNVREADIAARIGGEEFAILLGDAHAAQASELAERLLGVMHETPVRYHD-VRIRPT 276

Query: 220 ISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
            S GI+     EP +  ++ RAD A+Y +K  GR RV  
Sbjct: 277 ASFGISSLHPDEPNLENLMARADSAMYESKALGRGRVRV 315


>gi|289642348|ref|ZP_06474496.1| diguanylate cyclase [Frankia symbiont of Datisca glomerata]
 gi|289507880|gb|EFD28831.1| diguanylate cyclase [Frankia symbiont of Datisca glomerata]
          Length = 413

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 109/230 (47%), Gaps = 12/230 (5%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
           +A +F   +       ++Y       + +I++T +L+   ++ + +  L     R   L+
Sbjct: 156 LAVLFGAALVAPVTMLVQYARGITHDIPVIAVTYALMF-LLTIARMTVLLSDQRR---LA 211

Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
             D L+GL       + L             L++   D+D+FK IND++GHP GD+V+A 
Sbjct: 212 ITDALTGLYTRRFLEAELPIELARVRRTGGLLALFIIDVDHFKAINDHYGHPAGDRVLAE 271

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +S +L         + R GGEEFA  A      E +++A  +R  +  S I +++  S+ 
Sbjct: 272 ISVRLRGTTRLGDVLARYGGEEFALLAPNVHLDELSVVAERMRTRVAASPITVNADISLF 331

Query: 218 ITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            T+S G  A   H      ++  AD+ALY AK  GR+R V + D+ + T 
Sbjct: 332 ATVSVGACAFPVHVSDQVELVGMADRALYRAKALGRDRTVVWDDVASATA 381


>gi|261416541|ref|YP_003250224.1| diguanylate cyclase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261372997|gb|ACX75742.1| diguanylate cyclase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302326891|gb|ADL26092.1| diguanylate cyclase (GGDEF) domain protein [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 605

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 9/179 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
             +   +   L+  D L+GL+NH +   +L             + ++  DID+FK++ND 
Sbjct: 420 RALQVEKDKDLATRDGLTGLMNHRSLQEALRTEKVRADRKKYNIGVLMMDIDHFKRVNDT 479

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GHPVGD+VI  ++  +          V R GGEEF  A + ++ +     A  +RK + 
Sbjct: 480 YGHPVGDEVIKGIATAISGEIRKEIDVVARYGGEEFVVALVDTTPEGMIETAERIRKAVG 539

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             + N+     + +T+S G      +   +   +  ADQALY AK  GRN+VV F  +E
Sbjct: 540 KLEFNVHLTDPLRVTVSIGAFLVEPEFSDMKKAVNNADQALYKAKDGGRNQVVRFETVE 598


>gi|172038628|ref|YP_001805129.1| hypothetical protein cce_3715 [Cyanothece sp. ATCC 51142]
 gi|171700082|gb|ACB53063.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 607

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
           YI+ S L  L +  + + + S  D L+GL N       L         Y  ++ I+  DI
Sbjct: 424 YITLS-LANLKLRED-LKEQSVRDSLTGLFNRRYLYEFLKKEIAKAQRYETEIGIILLDI 481

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FKQINDN+ H +GD V+    + L           R GGEEF      +S       A
Sbjct: 482 DHFKQINDNYSHGLGDVVLEEFGEFLRDNIRESDIACRYGGEEFILIFPHASLDNTYQRA 541

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             LR+ I+             +T+S G+A    H      +++ AD ALY AK  GRNR 
Sbjct: 542 EALRRKIKRLHFRYQQHHLNSVTVSVGVANYPQHGLTGEEVVHHADLALYAAKDQGRNRT 601

Query: 256 VCFSD 260
           + + +
Sbjct: 602 IVYGE 606


>gi|153824843|ref|ZP_01977510.1| GGDEF family protein [Vibrio cholerae MZO-2]
 gi|149741561|gb|EDM55591.1| GGDEF family protein [Vibrio cholerae MZO-2]
          Length = 353

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 112/258 (43%), Gaps = 29/258 (11%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           IW C       F P  F I+ S  F+   + +  I    + Y          + L +  +
Sbjct: 98  IWSC-------FVPILFYIFTSARFAFVTSCLFLIIQSNIIY----------WQLQQTGA 140

Query: 71  LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAF---ISSL 122
            +  S+ + L   YI   ++  ++    R     +  L+  D L+G  N  +        
Sbjct: 141 AISWSVLLHLCFAYIGIWVVAHVYEDNRRKIENSLLYLASRDPLTGAHNRLSLTTSFQHF 200

Query: 123 GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
             +N++  L ++  D+D+FK IND FGH  GDKV+   +     V G    + R+GGEEF
Sbjct: 201 ERFNDQTSLCLLVIDLDFFKSINDQFGHDTGDKVLIETTRLFTQVVGDNN-LYRIGGEEF 259

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                  S ++A  +   LR I+            + +TIS G+ E    + ++ ++  A
Sbjct: 260 CVTLFDQSLEQAGRVCERLRAIVSQHLFAFGE-KRVQVTISIGVCEYQAGDQLNDLLKFA 318

Query: 241 DQALYVAKKSGRNRVVCF 258
           D  LY AKK+GRN+V  F
Sbjct: 319 DMELYRAKKAGRNQVRLF 336


>gi|46580974|ref|YP_011782.1| GGDEF domain/HAMP domain-containing protein [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46450394|gb|AAS97042.1| GGDEF domain/HAMP domain protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234662|gb|ADP87516.1| diguanylate cyclase [Desulfovibrio vulgaris RCH1]
          Length = 550

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 74/180 (41%), Gaps = 12/180 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
            L      + +++  D L+GL N           +          S +  DID FK IND
Sbjct: 344 RLGEHMRALERMAVTDQLTGLHNRRYVAVEGAKVVDVCWRGGRPCSCLMADIDRFKTIND 403

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD V+   ++             R GGEEF   A  +  ++A ++A  LR    
Sbjct: 404 TYGHEAGDAVLQAFAEVFRGGLRWSDIGARHGGEEFVVIAPNADTRDAVVIAERLRVDAA 463

Query: 205 NSQINISSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              +    G  I  T+S G+A           +  ++ RAD ALY AK  GR+RV  + +
Sbjct: 464 ALVVEF-GGHVIRFTVSVGVASLDEHGGDGNLLEELLRRADTALYRAKAEGRDRVCVWRE 522


>gi|304398740|ref|ZP_07380611.1| diguanylate cyclase [Pantoea sp. aB]
 gi|304353687|gb|EFM18063.1| diguanylate cyclase [Pantoea sp. aB]
          Length = 527

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 19/239 (7%)

Query: 32  SIFFSIFIATVIFIANIFLFYIG--LTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
           +++F + I  +I  A +  F  G   +P   L   + +  S        ++   Y     
Sbjct: 282 AVWFVLGI--IIVTAGVIAFMAGRIASPLEKLADRVRDGGSEAQAESLATVKTWYYEADR 339

Query: 90  LKELFISYNR--------ISQLSRIDCLSGLLNHSAFISSLGSYNEKL--SIVFFDIDYF 139
           LKE   ++          ++     D L+ L N   F       + +   S++  DID+F
Sbjct: 340 LKEAVQAHRHAVAGHLAALNDEVMTDPLTSLCNRRGFSVLAARSDSEHEQSVIAIDIDHF 399

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND +GH  GD V+  L+  L  +      V R GGEEF      ++ ++AA  A  +
Sbjct: 400 KKINDWYGHDAGDAVLVNLAALLRQLSRIGDIVSRFGGEEFILLLPHTTLEDAARTAERI 459

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
           R+++  +    +      +TISAG+A           ++ RAD+ALY AK +GRN V  
Sbjct: 460 REVVSITTFPFAG----TVTISAGVASGAELAGNREAVLRRADEALYEAKAAGRNTVRI 514


>gi|319762933|ref|YP_004126870.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|317117494|gb|ADU99982.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
          Length = 1058

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 13/188 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           ++     +   +   +  L+  D L+GL N    +  L         +    +++  D+D
Sbjct: 597 VTMVDQSQRRQAEEEVRYLAYNDPLTGLPNRRLLLDRLQQALAMSARHQLCGAVLMLDLD 656

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAIL 195
            FK IN+  GH +GD+++  ++ +L         + R GG+EF      LG+S QEAA  
Sbjct: 657 NFKHINETQGHDMGDRLLHAVALRLRACIPEDDTLARHGGDEFVVVLKDLGASPQEAATR 716

Query: 196 ANDL-RKIIE--NSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSG 251
           A  +  +I++       +  G   H T+S GI       E    ++ R+D A+Y AK +G
Sbjct: 717 AEAMGLQILDAMREPFALGGGEPRHTTLSVGIVIFQGLHESADELLKRSDMAMYEAKAAG 776

Query: 252 RNRVVCFS 259
           R+ +  F 
Sbjct: 777 RDALRFFD 784


>gi|251772817|gb|EES53377.1| diguanylate cyclase [Leptospirillum ferrodiazotrophum]
          Length = 363

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 70/218 (32%), Positives = 113/218 (51%), Gaps = 23/218 (10%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRI----------SQLSRIDCLSGLLNHSAF- 118
           +LV   +  +L +   S S+  EL  +  +I           + + +D L+ +LN   F 
Sbjct: 138 TLVDAVLKDTLSIRESSSSLNAELLKNQKKIDCLQDELRIAREEAMVDPLTEILNRRGFS 197

Query: 119 --ISSLGSYNE----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             I+ L    +      +++  DID+FK+IND++GH +GDK I  +S  L    G  +F+
Sbjct: 198 TKINDLFREGKFSGIPCALLMIDIDHFKKINDSYGHIIGDKAIIAVSKVLRGSVGENVFI 257

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH-ITISAGIAERCHK 230
           GR+GGEEFA  +  ++ +E   LA  LR+ I   +I N S+   I  +T+S GI      
Sbjct: 258 GRVGGEEFAVFSPKTTSEEGLALAERLRQNIMKIEITNPSTRQKISTMTVSIGIDLAPFS 317

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFS----DIENN 264
                +  RAD+ALY +K SGRN+V  ++    DI+N+
Sbjct: 318 GEWERMFERADKALYASKSSGRNKVTLWTSKTPDIKNS 355


>gi|228924160|ref|ZP_04087436.1| GGDEF domain protein [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228835650|gb|EEM81015.1| GGDEF domain protein [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 352

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 102/226 (45%), Gaps = 16/226 (7%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96
           +++ T I    I   YI L          ++ + L  IS   +  + +IS + + +    
Sbjct: 132 VWLHTYILSILIPALYIWLIKD-------IQVVGLYFISSITTGYITFISANYVLQSNEL 184

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
           +  + Q + ID L+ L N   F   +  +       N+   ++  DID+FK +ND +GHP
Sbjct: 185 FQTMKQYATIDALTRLGNVRQFDLEMNRHISNKNMKNDPFCLLLIDIDHFKYVNDMYGHP 244

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+  +   L      P    R GGEEFA             +   +R  +EN    
Sbjct: 245 AGDEVLKQVGCILRETSQFPDLAFRKGGEEFALLIPNMGLAYGVRVGEQIRTAVENHPFQ 304

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  G  I IT+S G++E   +E     I  AD ALY +K++GRN+V
Sbjct: 305 LLDGKKIKITVSVGVSEY--EESPEQFIQAADDALYYSKRNGRNKV 348


>gi|297582654|ref|YP_003698434.1| diguanylate cyclase [Bacillus selenitireducens MLS10]
 gi|297141111|gb|ADH97868.1| diguanylate cyclase [Bacillus selenitireducens MLS10]
          Length = 322

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/180 (30%), Positives = 76/180 (42%), Gaps = 12/180 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           +EL      +++L+  D L+ L N   F   L              SI   D+D FK+ N
Sbjct: 147 QELIRLNAELNELAITDNLTHLKNRRFFEDRLSYLLDLYEKEGVPFSICLIDVDEFKRFN 206

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGH  GD V+  L+  +         V R GGEEF           A  +   LR  +
Sbjct: 207 DTFGHLAGDFVLKELAKIMESHIRNDDLVSRFGGEEFIILLPSVGVDVAIDVIERLRMAV 266

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           E+            +TIS G+ E    +   +I+ R D ALY +K++GRNRV    D E 
Sbjct: 267 EDH-----DWIDRQVTISCGLTECIIGDDHESILRRVDDALYRSKENGRNRVTLHRDDEQ 321


>gi|254228301|ref|ZP_04921728.1| fog: ggdef domain containing protein [Vibrio sp. Ex25]
 gi|151939107|gb|EDN57938.1| fog: ggdef domain containing protein [Vibrio sp. Ex25]
          Length = 525

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/255 (25%), Positives = 109/255 (42%), Gaps = 34/255 (13%)

Query: 30  YFSIFF-SIFIATVIFIANIFLFYIGLTPFYGL---------------EYILVENLSLVI 73
            +S+FF SI I  +  +   F   +   P + L               +  LV++     
Sbjct: 283 MWSVFFKSIPIGLLTLLLIWFFSLLISRPLWQLAGAVRGVEEHSSSIDDLKLVKSWYFEA 342

Query: 74  ISITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEK 128
             + +S L   G +S +I        +++   +  D ++GLLN       LG     N  
Sbjct: 343 SHLKLSFLKAFGIVSKTI--------DKLQLDTLTDAMTGLLNRRGLDKVLGLFKQENTA 394

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            SI+  DID+FK +NDN+GH VGD ++   +  +         + R GGEEF      + 
Sbjct: 395 FSILALDIDHFKSVNDNYGHDVGDNLLKEFAQLMKEQARANDHLCRSGGEEFMMFLEATD 454

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVA 247
              A  +A  +R  +E     +       +T+S G++     + PI  ++  AD ALY A
Sbjct: 455 VHHAVDVAERIRHNVEKHDFLVVG----KVTVSLGVSHWKGNDMPIEAVMKDADNALYKA 510

Query: 248 KKSGRNRVVCFSDIE 262
           K++GRNR     D +
Sbjct: 511 KRNGRNRTELGEDAQ 525


>gi|289643506|ref|ZP_06475624.1| diguanylate cyclase with PAS/PAC sensor [Frankia symbiont of Datisca
            glomerata]
 gi|289506690|gb|EFD27671.1| diguanylate cyclase with PAS/PAC sensor [Frankia symbiont of Datisca
            glomerata]
          Length = 1268

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 8/169 (4%)

Query: 92   ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEK---LSIVFFDIDYFKQINDNF 146
            E  +  + +S  +  D L+GL N S F   L            +++F D+D FK +ND +
Sbjct: 1078 ERRVLQDELSYQASHDALTGLPNRSVFARRLDEIAAQRPTPAFAVLFIDLDRFKSVNDTY 1137

Query: 147  GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
            GH  GD+V+  +  +L         V RLGG+EFA     +    A  LA+ L   I   
Sbjct: 1138 GHNAGDEVLRIIGARLREAGTERDAVCRLGGDEFAVILGDADSGRARDLADQLLGAIR-- 1195

Query: 207  QINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNR 254
            +  +  G S+ +  + G+A       P   ++  AD A+Y AK++GR R
Sbjct: 1196 RPIVVGGRSLTVDATIGVALSESQDAPPGAVVRNADLAMYRAKEAGRAR 1244



 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 12/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144
           E     +R+S  +  D L+GL N  AF+  L               ++F D+D+FK +ND
Sbjct: 397 ERKDLQDRLSYQASHDLLTGLPNRVAFMGELEKAAGAVRAGGAPFVVLFVDLDHFKPVND 456

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD V+  ++++LV          RLGG+EF     G+ E  AA  A+ +   IE
Sbjct: 457 GYGHDAGDVVLRAVAERLVQTLRDGDLAVRLGGDEFGVLLRGADEAAAAAAADRI---IE 513

Query: 205 NSQINISSGPS-IHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +  I  G S + +  S GIA            +  AD A+Y AK++G+ R    +
Sbjct: 514 SVRAPIMVGASVVQVDASIGIAPSTLDVARPEHFLCVADNAMYEAKRAGKGRFAMAT 570


>gi|302554332|ref|ZP_07306674.1| integral membrane phosphodiesterase [Streptomyces viridochromogenes
           DSM 40736]
 gi|302471950|gb|EFL35043.1| integral membrane phosphodiesterase [Streptomyces viridochromogenes
           DSM 40736]
          Length = 1004

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 80/199 (40%), Gaps = 21/199 (10%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN------------EKLSIV 132
            +   + E      ++   +  D L+ L N + F   +                   +++
Sbjct: 504 FNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTKRVQHALSGRRACDRGVALRNTAVL 563

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F D+D FK +ND  GH  GD+++   + +L           RLGG+EFAA  +G + ++ 
Sbjct: 564 FIDLDGFKAVNDTIGHQAGDELLVQAARRLHESVRQGDTASRLGGDEFAALIVGDNTRDR 623

Query: 193 AI-------LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
                    LA+ LR  +  SQ  +  G  + +  S G+A          ++  AD A+Y
Sbjct: 624 EARQRHILELADRLRTTL--SQPYLIDGNDVRVNASIGVAFAEQGLGAGELLRNADLAMY 681

Query: 246 VAKKSGRNRVVCFSDIENN 264
            AK  G+ RV  +      
Sbjct: 682 RAKAGGKGRVELYKPQMQQ 700


>gi|258655404|ref|YP_003204560.1| diguanylate cyclase/phosphodiesterase [Nakamurella multipartita DSM
           44233]
 gi|258558629|gb|ACV81571.1| diguanylate cyclase/phosphodiesterase [Nakamurella multipartita DSM
           44233]
          Length = 814

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 95/208 (45%), Gaps = 23/208 (11%)

Query: 72  VIISITISLLLGYIS----GSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LG 123
           +I++    L+  Y++     ++   L    N++ + +  D L+GL N + F       L 
Sbjct: 335 LIVTFLGVLVRQYLTIRDNAALTANLARRENQLHRQAFQDILTGLPNRALFTDRAAHALE 394

Query: 124 SYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            + +    LS++F D+D FK +ND  GHPVGD+++  ++++L         V R GG+EF
Sbjct: 395 QHRQSMRPLSLLFVDLDDFKAVNDTLGHPVGDELVIRVAERLRGAIRASDTVARFGGDEF 454

Query: 181 AAAALGSSEQEAA---ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---IS 234
           A  A G           L   LR         +     + I  S GIAE   + P   + 
Sbjct: 455 AVLAEGEDADGVELGSRLVEALR------PRFVLGEHGLSIGASIGIAEVPAEHPTPTLD 508

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIE 262
            +  RAD A+Y AK++G+ ++  +    
Sbjct: 509 DLFSRADIAMYAAKRAGKGQIALYDSTM 536


>gi|170722183|ref|YP_001749871.1| diguanylate cyclase [Pseudomonas putida W619]
 gi|169760186|gb|ACA73502.1| diguanylate cyclase [Pseudomonas putida W619]
          Length = 377

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/261 (25%), Positives = 117/261 (44%), Gaps = 27/261 (10%)

Query: 20  ESFSPHTFMIYFSIFFSI-FIATVIFIANIFLFYIGLTPFYGLEYILVENLSL------- 71
           +     T ++ F++  S+  ++      N+ L  I L       ++L++  +L       
Sbjct: 113 DDLLGQTLIMLFAVGMSVSAVSCYSSYRNMTLVSIALVLLPCTAWLLLQPSALQQGIALA 172

Query: 72  ------VIISITISLLLGYISGSILKELFISYNRISQLSR-IDCLSGLLNHSAFIS-SLG 123
                  +++ T SL    ++   LK      +R++ ++   D L+GL N  AF   +L 
Sbjct: 173 VLVFASFVVNATQSLSSALVTAWRLKHEMERAHRLAIVASCTDELTGLNNRRAFFDCALA 232

Query: 124 SY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
            +      +  ++++  D+D+FKQIND  GH  GD+V+  +   +          GRLGG
Sbjct: 233 QHTLCKEGHTYVAVLMLDVDHFKQINDTAGHAAGDQVLKRIGTAISASLRDNDIAGRLGG 292

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTI 236
           EEFA     +    A+  A  LR +I    ++        +T S G+A  +     +  +
Sbjct: 293 EEFAILLPDTPLVTASEFAERLRALIAKLNVDT----QYAVTASIGLAFAKAPASELDAL 348

Query: 237 IYRADQALYVAKKSGRNRVVC 257
           +  AD+A+Y AK SGRNRV  
Sbjct: 349 LSSADKAMYRAKASGRNRVTI 369


>gi|71282198|ref|YP_270823.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71147938|gb|AAZ28411.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 431

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/202 (28%), Positives = 103/202 (50%), Gaps = 16/202 (7%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS------ 121
           N +L+I +  + +L+      + ++L I  N++  L+R D L+GL N +           
Sbjct: 234 NFTLIISTGIVFVLI------LFRQLRI-RNKLILLTRTDALTGLSNRNTLFKHGEKMVS 286

Query: 122 -LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 E+LSI+  D+D+FK+IND+FGH +GD+++  +SD +     +   + R GG+EF
Sbjct: 287 SFTEQPEELSILLLDLDHFKKINDSFGHDIGDEILMAVSDLVKETMRSRDLLARFGGDEF 346

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYR 239
            A    +   +A  +A  + + I     +     S  +T S G+A     +     +++ 
Sbjct: 347 VALLPFADSNKAKAIAMRINEKISQYDFSSLVLQS-RVTFSIGVATMADNKMSFDDLLHD 405

Query: 240 ADQALYVAKKSGRNRVVCFSDI 261
           AD A+Y AK  GRN V+C+ +I
Sbjct: 406 ADLAMYQAKDQGRNTVICYQNI 427


>gi|319786946|ref|YP_004146421.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317465458|gb|ADV27190.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 975

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 84/187 (44%), Gaps = 14/187 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----------LSIVFFDIDYFKQ 141
           E   +  R++  +  D L+GL N S  + SL S  E+           +++F D+D FK 
Sbjct: 544 ERLRAEQRLTHQALHDALTGLPNRSCLLDSLASALERASDMAGDVPGFAVLFLDLDRFKV 603

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLR 200
           +ND+ GH  GD ++  ++ +LV   G    V RLGG+EFA  A           LA  L 
Sbjct: 604 VNDSIGHAAGDDLLVAVARRLVSAVGNDAVVARLGGDEFAVLASCKDGIDGVHELARHLL 663

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +I   Q    +G  +  + S GIA    +      ++  AD A+Y AK  GR+R   F 
Sbjct: 664 SVI--GQPLWVAGRELFPSASMGIALWHPRYRSGEELLRDADAAMYRAKNEGRDRFAVFD 721

Query: 260 DIENNTC 266
           +      
Sbjct: 722 EAMREQA 728


>gi|322417766|ref|YP_004196989.1| PAS/PAC sensor-containing diguanylate cyclase [Geobacter sp. M18]
 gi|320124153|gb|ADW11713.1| diguanylate cyclase with PAS/PAC sensor [Geobacter sp. M18]
          Length = 815

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 11/187 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           +    + E  ++  R+  L+  D L+ L N   F   L         Y   L++++ D+D
Sbjct: 621 VIFRDITERRLAKARLETLAHYDSLTSLPNRVLFFDRLNHAVSEAKRYRHPLALMYLDLD 680

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILA 196
            FK+IND FGH  GD V+    ++L         V R+GG+EF       +  ++AA++A
Sbjct: 681 CFKEINDRFGHAAGDAVLMEAGERLKECVRACDMVARMGGDEFTIILAKMAEAEDAAVVA 740

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
             + K    S   +  G +  + +S GI         +  ++  AD A+Y AK+ G+N  
Sbjct: 741 ERIIKAFA-SPFQVEGGEA-GVGVSIGICVYPSCDSDLDGMVRFADSAMYRAKQDGKNVY 798

Query: 256 VCFSDIE 262
             +S   
Sbjct: 799 RFYSPEM 805


>gi|254490929|ref|ZP_05104111.1| hypothetical protein MDMS009_1262 [Methylophaga thiooxidans DMS010]
 gi|224463838|gb|EEF80105.1| hypothetical protein MDMS009_1262 [Methylophaga thiooxydans DMS010]
          Length = 1084

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 11/182 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNF 146
             +   +++L+ ID L+GL N + F   +            +L++ F D+D+FK IND+ 
Sbjct: 646 RQNEEHLTRLASIDGLTGLPNRAVFTDRVEHAIHKSMRNSGRLAVFFLDLDHFKHINDSL 705

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIEN 205
           GH  GD ++  ++ ++         V RLGG+EF        S +    +A  + K +  
Sbjct: 706 GHKAGDILLTEVAGRIKACVREGDTVARLGGDEFTLLLEDVRSAEYVGKVAEKVIKSM-- 763

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +Q        ++I+ S GI+        +  ++  AD A+Y AKK GRN    +S   N 
Sbjct: 764 TQPYQIENTEVNISPSIGISLYPADGRDVDMLVRNADAAMYHAKKVGRNNFQFYSAEMNA 823

Query: 265 TC 266
             
Sbjct: 824 EA 825


>gi|94263456|ref|ZP_01287269.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|93456186|gb|EAT06325.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
          Length = 730

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           + +E       I +L+  D L+ L N       L           +  +++F D+D FK 
Sbjct: 274 LEQEKRAKEAEIERLAFYDFLTDLPNRRLLQDRLEQAFAASERSGQYGAVIFLDLDNFKN 333

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG------SSEQEAAIL 195
           +ND  GH  GD ++   + +L         V RLGG+EF            ++      +
Sbjct: 334 VNDTRGHRTGDLILQMTARRLRDTVREDDTVARLGGDEFVILLSNLATQSETAISRVGRV 393

Query: 196 ANDLRKIIEN-------SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247
           A  +R  +          Q +       H+  S GIA  R H+     +   AD A+Y A
Sbjct: 394 AEKIRLALARPFQLTKPQQGSSLESGEFHLGASLGIALFRGHENSAEELFKYADTAMYRA 453

Query: 248 KKSGRNRVVCFSDIEN 263
           K++GRN    F     
Sbjct: 454 KEAGRNTARFFDPAMQ 469


>gi|115522715|ref|YP_779626.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
 gi|115516662|gb|ABJ04646.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
          Length = 506

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 96/204 (47%), Gaps = 18/204 (8%)

Query: 67  ENLSLVIISITISLLLGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFIS--- 120
           E + L  I + +++ +  ++  +++E      +  R+ +LS  D L+GL N   F +   
Sbjct: 297 EAIRLGSILLALAVFVAGVTIFLIREIDRRARAEQRLEELSVTDPLTGLTNRRKFDAAID 356

Query: 121 ----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRL 175
                       ++++  D D FKQ ND+ GH  GD+++  ++  +   V        R 
Sbjct: 357 EEWRRAQRRGSPMALLMIDADLFKQFNDSHGHQAGDQMLIGIAVCISDSVHRAGDCAARF 416

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-- 233
           GGEEFA    G +  +A  +A  +R  +E   ++        +TIS G+A       +  
Sbjct: 417 GGEEFAVLLPGLAAPDALSVAESIRTKVERWSLD-----QTGVTISVGVASLIPAPSVHW 471

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
           S ++  AD+ALY AK+SGRN  V 
Sbjct: 472 SELVEAADKALYAAKESGRNACVV 495


>gi|328543003|ref|YP_004303112.1| diguanylate cyclase (GGDEF)/phosphodiesterase (EAL), with PAS
           sensor, signal transduction histidine kinase and
           methyl-accepting chemotaxis domains; membrane-associated
           protein [polymorphum gilvum SL003B-26A1]
 gi|326412749|gb|ADZ69812.1| Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL), with
           PAS sensor, signal transduction histidine kinase and
           methyl-accepting chemotaxis domains; putative
           membrane-associated protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 980

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 84/183 (45%), Gaps = 10/183 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQI 142
            + E      RI+ L+  D L+GL N   F               +L++++ D+D FK +
Sbjct: 535 DITERRRQEERIAHLAHHDALTGLANRVLFREEACEALLRRRKARRLALLYIDLDQFKAV 594

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GHP GD+++  ++ +L    G    V RLGG+EFA    G+   E A  A D  ++
Sbjct: 595 NDTLGHPTGDRLLVEVAKRLRAAVGRHDHVARLGGDEFAIMLAGNPRAEDASAAAD--RL 652

Query: 203 IENSQINIS-SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           IE  +I     G  I +  S GIA           ++  AD ALY AK+ GRN    F  
Sbjct: 653 IETIRIPYEVDGNFIVVGASVGIAMAPDDGTDADVLMKHADMALYRAKQDGRNTYCFFES 712

Query: 261 IEN 263
             +
Sbjct: 713 DMD 715


>gi|320108809|ref|YP_004184399.1| diguanylate cyclase/phosphodiesterase [Terriglobus saanensis
           SP1PR4]
 gi|319927330|gb|ADV84405.1| diguanylate cyclase/phosphodiesterase [Terriglobus saanensis
           SP1PR4]
          Length = 658

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 97/226 (42%), Gaps = 13/226 (5%)

Query: 45  IANIFLFYIGLTPFYGL--EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102
           +  +F  Y+  T  + L     L     + +  +    + G++    +++   +   +  
Sbjct: 164 VIGVFEAYLDQTSTHALYLRSFLFTEGIIAVGFLLAGGIPGWMVYRKMRDYRKAQAELLF 223

Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++  D L+G+ N      +              L+++  D+D  K +ND+FGH  GD+V+
Sbjct: 224 VAAHDSLTGVANRRHLEEAAKTALAWSRRNKSFLAVLLIDVDRLKGVNDSFGHEAGDEVL 283

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGP 214
             ++ +L          GRLGG+EF    +G ++   A  +A+    ++   +    +G 
Sbjct: 284 REVARRLKSTVRAEDTAGRLGGDEFVVLQVGIAQPSGAISIADRFMNVL--CEPYNLAGM 341

Query: 215 SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +  + S G+A      +    ++  A+ ALY AK SGRN V  F 
Sbjct: 342 LVSCSASIGVAIAPADADDWDQLLSCAEAALYKAKNSGRNTVCFFE 387


>gi|299530671|ref|ZP_07044086.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298721187|gb|EFI62129.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 312

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 12/185 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL ++  +++++  +D L+GL+N       L          +  L+++  D+D+FK  ND
Sbjct: 123 ELHLANQKLNEMVELDALTGLVNRRGLDRMLHAEIAAARRESRPLTLMLCDLDHFKHFND 182

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD+ +  +   L            R GGEEFA     +    +   A  L +++
Sbjct: 183 TYGHVQGDECLKQVGRLLREVCVRPRDIAARYGGEEFAMILPNTPRSGSMTFARALGQML 242

Query: 204 ENSQI-NISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  +I    +   I +T+S GI      E     +++ RAD+ALY AK  GRNR   F +
Sbjct: 243 KFLKIRPPGAAEDIPLTLSGGITTCIPDEHTSAESMLMRADEALYAAKSQGRNRFFSF-E 301

Query: 261 IENNT 265
           ++ +T
Sbjct: 302 MQMDT 306


>gi|294013361|ref|YP_003546821.1| putative diguanylate cyclase [Sphingobium japonicum UT26S]
 gi|292676691|dbj|BAI98209.1| putative diguanylate cyclase [Sphingobium japonicum UT26S]
          Length = 387

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 10/186 (5%)

Query: 87  GSILKELFISY-NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
                +L  S      + +  D L+GL N  AF       ++      + L++ F DID+
Sbjct: 202 NQKQTQLLKSNLESARRAAEHDHLTGLPNRRAFEGTLREELAQAQKEGQPLAVAFCDIDH 261

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND  GH  GD+V+ F++  L         V R GGEEF     G +  EA    + 
Sbjct: 262 FKLINDTHGHDTGDRVLKFVAGLLSKASNDQCHVARHGGEEFVMLFRGKTAAEACEAVDG 321

Query: 199 LRKIIE-NSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +R+ +   S +N S+G  +  ++ SAG+A     E     +  AD+ALY+AK+ GRNRV 
Sbjct: 322 VRQDLSTRSLVNRSNGERMERVSFSAGVANVLAYEDPRAALKAADRALYLAKEHGRNRVY 381

Query: 257 CFSDIE 262
             ++++
Sbjct: 382 LAAELD 387


>gi|317052164|ref|YP_004113280.1| diguanylate cyclase [Desulfurispirillum indicum S5]
 gi|316947248|gb|ADU66724.1| diguanylate cyclase [Desulfurispirillum indicum S5]
          Length = 533

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 19/191 (9%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYN 126
           I+ T + LL  ++ ++++E          L+  D L+G+ N   F   L          +
Sbjct: 341 IATTFNTLLS-LAEALIQEK-------ETLAITDPLTGISNRLQFTRVLDDEAARKRRNS 392

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             ++++ FDID+FK++ND +GH  GD V+  ++  +           R GGEEF      
Sbjct: 393 TPMALIMFDIDHFKRVNDTWGHNTGDAVLKEIARIVSAGIRASDVFARWGGEEFVLLLRD 452

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
           +  + A I+A  LR+ IE     I      ++T S G+      +  +  + RAD+ALY 
Sbjct: 453 NDCKAARIVAEKLRQQIEWHPFPIIG----NLTCSFGVTAWQPDDDEAGFLARADKALYA 508

Query: 247 AKKSGRNRVVC 257
           +K +GRN+V C
Sbjct: 509 SKAAGRNQVSC 519


>gi|186472517|ref|YP_001859859.1| diguanylate cyclase with GAF sensor [Burkholderia phymatum STM815]
 gi|184194849|gb|ACC72813.1| diguanylate cyclase with GAF sensor [Burkholderia phymatum STM815]
          Length = 418

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 81/175 (46%), Gaps = 14/175 (8%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFG 147
               ++ +L   D L+GL N   F   L         Y   L  +F DID FK IND  G
Sbjct: 241 AHREQLERLGATDALTGLPNRRYFDERLREETMRASRYRLPLGCLFIDIDGFKPINDAHG 300

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD+ +A +   L         + R GGEEFA    G   +++  +A  +R  +   +
Sbjct: 301 HAIGDRALALVGACLRKQTRLGDTIARYGGEEFAVLLQG-DLKDSLAVAERMRTAVAQLE 359

Query: 208 INISSGPSIHITISAGIAERC--HKEPIS----TIIYRADQALYVAKKSGRNRVV 256
           ++ + G  I +T+S G +         +     T++  AD+A+Y AK  GRNRVV
Sbjct: 360 LHDNGGARIPLTVSIGASAHAMQSGSDLDRLGRTLVDEADRAMYKAKADGRNRVV 414


>gi|54298631|ref|YP_125000.1| hypothetical protein lpp2695 [Legionella pneumophila str. Paris]
 gi|53752416|emb|CAH13848.1| hypothetical protein lpp2695 [Legionella pneumophila str. Paris]
          Length = 835

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 10/183 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           I G+ + +L  + N +  L+R D L+ + N   F   L           + L+++  D+D
Sbjct: 390 IYGTDITQLKNTQNAMLNLTRRDTLTQIANRQYFEEKLIEKIYEHHLKEKSLALLLIDLD 449

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND  GHP GDK++  +++++        F+ RLGG+EF       +   A  +A 
Sbjct: 450 NFKIVNDTLGHPTGDKLLMAVTNRMTRCLRANDFIARLGGDEFIVLLDQCNTDTAVKVAE 509

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVV 256
            +  +++           + IT S GIA       I+  ++  AD A+Y +KK+G+N+  
Sbjct: 510 KIINVLDK-PFQFDDYH-MTITASIGIAIYPETSEIARDLLKYADIAMYQSKKTGKNKCT 567

Query: 257 CFS 259
            FS
Sbjct: 568 VFS 570


>gi|148256520|ref|YP_001241105.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
 gi|146408693|gb|ABQ37199.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
          Length = 822

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 82/184 (44%), Gaps = 11/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + E   +  RI+ ++  D L+GL N   F   L             L+++  D+D FK 
Sbjct: 379 DITERRRAEARIAYMAHHDGLTGLPNREFFQQRLAQELDEAASGARPLAVLCIDLDLFKT 438

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND+FGHP+GD+++  ++ +L           RLGG+EFAA         +   A  L  
Sbjct: 439 VNDSFGHPMGDRLLQAVAGRLKQQMHGGNLAARLGGDEFAAIVSQDGADGSGEFAARLIS 498

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++  S      G  + I  S GIA           ++  AD ALY AK+ G  RV  F +
Sbjct: 499 VL--SAPYDIDGNELVIGASIGIALSPLDGTSCEELMKNADMALYRAKQHG-GRVHRFFE 555

Query: 261 IENN 264
            E +
Sbjct: 556 REMD 559


>gi|330825013|ref|YP_004388316.1| PAS/PAC and Chase sensor-containing diguanylate
           cyclase/phosphodiesterase [Alicycliphilus denitrificans
           K601]
 gi|329310385|gb|AEB84800.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Alicycliphilus denitrificans K601]
          Length = 1054

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 13/188 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           ++     +   +   +  L+  D L+GL N    +  L         +    +++  D+D
Sbjct: 597 VTMVDQSQRRQAEEEVRYLAYNDPLTGLPNRRLLLDRLQQALAMSARHQLCGAVLMLDLD 656

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAIL 195
            FK IN+  GH +GD+++  ++ +L         + R GG+EF      LG+S QEAA  
Sbjct: 657 NFKHINETQGHDMGDRLLHAVALRLRACIPEDDTLARHGGDEFVVVLKDLGASPQEAATR 716

Query: 196 ANDL-RKIIE--NSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSG 251
           A  +  +I++       +  G   H T+S GI       E    ++ R+D A+Y AK +G
Sbjct: 717 AEAMGLQILDAMREPFALGGGEPRHTTLSVGIVIFQGLHESADELLKRSDMAMYEAKAAG 776

Query: 252 RNRVVCFS 259
           R+ +  F 
Sbjct: 777 RDALRFFD 784


>gi|311696803|gb|ADP99676.1| diguanylate cyclase [marine bacterium HP15]
          Length = 336

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 67/245 (27%), Positives = 104/245 (42%), Gaps = 17/245 (6%)

Query: 27  FMIYFSIFFSIFIA-TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI 85
           F +Y  +  + F+    I +A   +  I L    G     V+  S    +  +S    Y+
Sbjct: 92  FWLYPCLVTTFFLVNPRIAVALNIVSVIALMVHGGAFRSDVQMWSFASTAFVVSAC-AYV 150

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
                        R+  L+ ID L+G+ N  +    L              ++V  DID+
Sbjct: 151 FA---HRNHDQRERLEHLATIDPLTGIKNRRSMDQELDLAAANAERTGLPYALVMLDIDH 207

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND  GH VGD V+  L   L         + R GGEEF     G        + N+
Sbjct: 208 FKKINDEHGHGVGDGVLTDLVALLKQNTRKSDQLFRYGGEEFVLLLPGVDGIGLKAVMNN 267

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           L++++          P   +T S G+A   H E + + + RAD ALY AK++GR+ VV F
Sbjct: 268 LQQVLRKYM----KHPGGSVTASFGVALLEHGESVDSWLARADAALYEAKEAGRDCVV-F 322

Query: 259 SDIEN 263
           +D + 
Sbjct: 323 ADAQR 327


>gi|262158743|ref|ZP_06029856.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|262029316|gb|EEY47967.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
          Length = 461

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 107/214 (50%), Gaps = 4/214 (1%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            I   ++ +   Y    + +    L++  +  +L L        ++L  +  ++S L++ 
Sbjct: 245 RILSRWVHIETIYPRYLMPILASGLLLSIVIYTLQLRRTVRLRTQQLEEANQKLSYLAKT 304

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+G+ N  +F   L +   +   L+++ FDID FK IND FGH  GD  I F+   + 
Sbjct: 305 DSLTGIANRRSFFEHLEAEQTRSGSLTLMVFDIDDFKTINDRFGHGAGDNAICFVVGCVR 364

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
               +  +  R+GGEEFA  A G + +E+  LA  + + +   +  +++  S+ +TIS G
Sbjct: 365 QALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKKWVVNAQHSLSLTISLG 424

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            A   H     ++ + AD  +Y  K++G+N+VV 
Sbjct: 425 CAFYLHPARPFSL-HDADSLMYEGKRNGKNQVVF 457


>gi|209918648|ref|YP_002292732.1| hypothetical protein ECSE_1457 [Escherichia coli SE11]
 gi|209911907|dbj|BAG76981.1| conserved hypothetical protein [Escherichia coli SE11]
          Length = 443

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 73/237 (30%), Positives = 121/237 (51%), Gaps = 19/237 (8%)

Query: 30  YFSIFFSIFIATVIFIAN--IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           Y  I+  I + +++ + N  I L++I  +      + + + L L+ +   IS L+ YI  
Sbjct: 218 YSKIWLCIILISIVSVCNNLILLYFIDKS---HPAWYMTKFLELISMIYIISTLMYYI-- 272

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQINDN 145
                 F   N  + ++  D L+   N   FI SL   S +   S++  DID FK IND 
Sbjct: 273 ------FRKLNHANHMAIHDPLTNTYNRRYFIDSLKNISKHHDFSVIMLDIDSFKSINDK 326

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH +GD+VI  ++  +         +GRLGGEEF     G++++    +A  +RK IE 
Sbjct: 327 WGHHMGDQVIVMVTRIIKKSIRKEDILGRLGGEEFGIIIKGNTQKLLLSIAERIRKNIEE 386

Query: 206 --SQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             S+  +S GP   IT+S G    + +    S ++  AD+ALY AK++G+N+V+  S
Sbjct: 387 QCSEKLLSHGPE-KITVSIGCFTSKENNLSPSEMLVNADKALYQAKRTGKNKVIIHS 442


>gi|154253692|ref|YP_001414516.1| diguanylate cyclase [Parvibaculum lavamentivorans DS-1]
 gi|154157642|gb|ABS64859.1| diguanylate cyclase [Parvibaculum lavamentivorans DS-1]
          Length = 351

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 9/176 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           L EL  +  +    +R D L+G+ N  AF  +L        + N  L +   DID+FK+ 
Sbjct: 162 LDELQQNLEKAHTEARTDGLTGVNNRKAFDEALARAMAAASTSNAPLCLAIGDIDHFKKF 221

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH  GD+V+  +++ L        FV R GGEEFA     +    A  ++N +R+ 
Sbjct: 222 NDTFGHRTGDQVLRLVANCLKTGALEQHFVARYGGEEFAVIMPATDIATAEAISNKIRET 281

Query: 203 IENSQ-INISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++  + +  S+G S+  +T+S GIA     +  +++I RAD  LY AK +GRNR++
Sbjct: 282 VQARELVKRSTGESLGRVTMSMGIALLRDTDSAASLIERADGCLYDAKHAGRNRII 337


>gi|302341977|ref|YP_003806506.1| diguanylate cyclase/phosphodiesterase [Desulfarculus baarsii DSM
           2075]
 gi|301638590|gb|ADK83912.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfarculus baarsii DSM 2075]
          Length = 703

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 11/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            +  +  +  +I+     D L+GL N   F   L           + ++++F D+D FK 
Sbjct: 249 DITSIKRTEEQIAHQVYHDPLTGLPNRLLFQDRLEMALAHAKRQRDGVAVLFMDLDNFKH 308

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLR 200
           +ND+ GH  GDK++  ++ +L+        + RLGG++F      ++ E EA  +A  + 
Sbjct: 309 VNDSLGHAAGDKLLVAVARRLLAKVRREDTMARLGGDDFLFLLPETAGEDEAGQVAQQML 368

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              E ++     G  +HI  S GIA      +    +I  A+ A+Y AK+  R     F 
Sbjct: 369 D--ELARPFRLGGKKLHIRASVGIALFPNDGQTPEKLIANAELAMYRAKEGCREGYCFFE 426

Query: 260 DIENN 264
              N 
Sbjct: 427 PALNQ 431


>gi|284050647|ref|ZP_06380857.1| diguanylate cyclase [Arthrospira platensis str. Paraca]
 gi|291568706|dbj|BAI90978.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 729

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 86/185 (46%), Gaps = 11/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKL-SIVFFDIDYFKQ 141
           + ++L      + Q +  D L+GL N   F   L         N+K   + F D++ FK 
Sbjct: 543 LAEQLEKYNAELQQRADHDPLTGLPNRQLFEERLTQALVWADTNQKFVGLFFLDLNNFKP 602

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           IND +GH VGD V+  ++++L         V RLGG+EF     G  S  +A  +A  + 
Sbjct: 603 INDQYGHHVGDLVLKLVAERLRGCLRASDTVSRLGGDEFTVILPGIPSHADAVKVAEKIL 662

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +  +Q +  +G  I I +S GI+      +   T++ +AD A+Y AK   +N      
Sbjct: 663 DQV--TQESELNGYIITIGVSIGISLYPLDSQDYETLVQKADAAMYRAKSRHQNSYELTP 720

Query: 260 DIENN 264
            +E N
Sbjct: 721 PVEPN 725


>gi|302879369|ref|YP_003847933.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
           capsiferriformans ES-2]
 gi|302582158|gb|ADL56169.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
           capsiferriformans ES-2]
          Length = 565

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 12/188 (6%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132
           ++ YIS  S + +     +RI  L+  D L+ L N + F   L          + K+ ++
Sbjct: 377 VINYISLFSDITQRKEDEHRIEMLAHYDVLTKLPNRALFADRLQHALQVADRSHRKVGLM 436

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQE 191
           F D+D FK IND  GH  GD+++  ++++L         V R GG+EF        S  +
Sbjct: 437 FLDLDKFKAINDTLGHLAGDQLLQSVAERLSRCVRQSDTVCRQGGDEFMILLEEIHSPLD 496

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
              +A  +   +E S  +     S  ++ S G A    H      +   ADQA+Y AK++
Sbjct: 497 IEGVAQKI--ALEMSMPHQMGEESRVVSFSIGAAIYPDHAIDSEKLSQCADQAMYQAKEA 554

Query: 251 GRNRVVCF 258
           GRN    +
Sbjct: 555 GRNNFKLY 562


>gi|238749528|ref|ZP_04611033.1| hypothetical protein yrohd0001_28460 [Yersinia rohdei ATCC 43380]
 gi|238712183|gb|EEQ04396.1| hypothetical protein yrohd0001_28460 [Yersinia rohdei ATCC 43380]
          Length = 572

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 13/177 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           +L  +  R+   +  D L+ L N   F              +  L+I+  DIDYFK  ND
Sbjct: 389 KLIKANRRLEIQASTDSLTKLPNRREFKKVLAHEFMRAKRSSSPLAILMIDIDYFKNFND 448

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  L          V R GGEEFAA    +    A+++A  + + I
Sbjct: 449 YYGHISGDACLRLVARALRKALKRNTDIVARYGGEEFAAILPDTDPTGASLVAEHILQSI 508

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNRV 255
               I         +TIS G+              + ++  ADQALY +KK+GRN+ 
Sbjct: 509 RAMGIKHYDSKFRKVTISLGVTVYQAPLHPGISDQADLMLAADQALYYSKKNGRNQF 565


>gi|229528638|ref|ZP_04418028.1| sensory box/GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229332412|gb|EEN97898.1| sensory box/GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|327484871|gb|AEA79278.1| Sensory box/GGDEF family protein [Vibrio cholerae LMA3894-4]
          Length = 579

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 11/179 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +LS +D L+ + N   F   L           + LSI+  D+DYFK  N
Sbjct: 397 EQLEAANQELERLSFLDSLTHVANRRRFDEQLHTLWHLHVREGKPLSIILCDVDYFKDYN 456

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH +GD+ +  ++     V       V R GGEEF      + +  A ++A  + + 
Sbjct: 457 DAYGHLMGDETLKQIAIAFTQVANRHSDCVARYGGEEFGILLPNTPQSGAILVAERIHEK 516

Query: 203 IENSQINISSGPSI-HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +    I          IT+S GI       ++    ++  AD+ALY AK +GRN+   +
Sbjct: 517 VRGLAIPHDHSKVADRITVSLGIVTLIPRPEDVPEQMVELADRALYQAKANGRNQTSIY 575


>gi|197336122|ref|YP_002156327.1| ggdef family protein [Vibrio fischeri MJ11]
 gi|197317612|gb|ACH67059.1| ggdef family protein [Vibrio fischeri MJ11]
          Length = 505

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 12/206 (5%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKE-------LFISYNRISQLSRIDCLSGLLN 114
           EY  +  + L    +TIS+L+  ++  + ++       L I    +  ++  D L+GLLN
Sbjct: 300 EYQRLTLIWLFFGILTISMLIAALTSVVTRDKQRIENLLEIRTKELRYMAMHDDLTGLLN 359

Query: 115 HSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
             A    +  Y E     +++ FDID FKQIND +GHP GD V+  +   +    G   +
Sbjct: 360 RRAIRDVISRYIETKKSFALLCFDIDKFKQINDTYGHPEGDAVLRHIGHLMSETLGNNAY 419

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
           V RLGG+EF+     +S  E  +++  +  ++  S   + +   I  TIS G A     E
Sbjct: 420 VSRLGGDEFSIVMKLNSIDELTLISEQIHDLVATSP-TVLNDFDIAQTISLG-AVLWKGE 477

Query: 232 PISTIIYRADQALYVAKKSGRNRVVC 257
            +  ++  ADQALY +K  GRN+V  
Sbjct: 478 SLEGLLKAADQALYQSKAMGRNQVTI 503


>gi|158521752|ref|YP_001529622.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3]
 gi|158510578|gb|ABW67545.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3]
          Length = 374

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 12/173 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFG 147
           ++  +  +L R D L+GL N   F             Y   +S++  DID+FK+ ND++G
Sbjct: 195 MTLQQTRELIRKDELTGLYNRRYFFERFEREVYRSRRYGRTISLMMIDIDHFKEYNDSYG 254

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+V+  +S            V R GGEEF      +S + A  +A  LR+ +E   
Sbjct: 255 HLRGDRVLKTISRIFESSLRKIDVVARYGGEEFLVLLPETSRENAIRVAEKLRQAVEKVD 314

Query: 208 INISSGPSIH---ITISAGIAERCHKEPISTI-IYRADQALYVAKKSGRNRVV 256
            N    P++    +TI+ G++          + +  AD+ALY+ K  GRN+V 
Sbjct: 315 FN-EDAPNLGPCALTITIGVSAIPDDANEPILALDLADKALYMGKAQGRNQVC 366


>gi|119897241|ref|YP_932454.1| GGEF/EAL/PAS/PAC-domain-containing protein [Azoarcus sp. BH72]
 gi|119669654|emb|CAL93567.1| GGEF/EAL/PAS/PAC-domain containing protein [Azoarcus sp. BH72]
          Length = 610

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 11/183 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           S   + E       +   +  D ++GL N       L          +E+L + F D+D 
Sbjct: 152 SVEDISERRRHRTLLEHQATHDPVTGLPNRYLLQDRLDRAMGAARRRDERLMVAFIDLDN 211

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILAN 197
           FK +ND+ GH VGD+++  ++ +L         + R GG+EF      ++ Q     +  
Sbjct: 212 FKFVNDSMGHAVGDRLLVEMARRLQACVRETDTLARYGGDEFVLIISSAAAQAGPVQVLE 271

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +   +   Q     G  + +  S G+A        + T++  AD A+Y AK +G+ +  
Sbjct: 272 RVHDAVR--QPLALEGRDLSVGCSMGVAVYPRDGADLETLLRHADAAMYQAKAAGKGQFR 329

Query: 257 CFS 259
            + 
Sbjct: 330 FYE 332


>gi|83646934|ref|YP_435369.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83634977|gb|ABC30944.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 571

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 10/171 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
            ++++ ++  D L+GLLN + F+  L          + + S+ + D+D+FK +ND+ GH 
Sbjct: 132 QHQLNYMAHFDALTGLLNRALFLDRLQLAIKKAERNSYECSLFYLDLDHFKPVNDSLGHD 191

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD ++  ++ ++  V      V R+GG+EF              +A  L +  E ++  
Sbjct: 192 AGDALLQAVAGRIKSVVRETDSVARIGGDEFVVLLENVDVNITRNVAEKLLE--EVNRPT 249

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +   + ++ S GIA      +    ++  AD ALY AK  GR+    FS
Sbjct: 250 HIAEHEVAVSSSIGIARYPTTAKSAQELLKHADLALYAAKGRGRSTYHEFS 300


>gi|88860801|ref|ZP_01135438.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Pseudoalteromonas tunicata D2]
 gi|88817396|gb|EAR27214.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Pseudoalteromonas tunicata D2]
          Length = 357

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 107/242 (44%), Gaps = 18/242 (7%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN--------LSLVIISITISLLLGY 84
           ++F +F      +AN+ +F   L   Y  ++IL E         ++  +++I +S +  Y
Sbjct: 115 VYFILFDYRKGLVANLLIFSAILFLLYQPDWILAEYQPAEKSRFIASYLVTIFLSFVAEY 174

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDID 137
                 +EL     +  + +  D L+ L N                 +   + +V  DID
Sbjct: 175 FRFHSHQELSSINYQRQKQANTDPLTQLPNRRFLDSVFFIGADREPKHYFPMVVVMADID 234

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK++ND +GH  GD V+  ++  L         V R+GGEEF      +   +   +A 
Sbjct: 235 FFKRVNDTYGHDTGDHVLKHVASLLKSSLRGFDVVARIGGEEFLILLPQTMLVDGISVAE 294

Query: 198 DLRKIIENSQINISSGPS---IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            +R   +N+  N         I +T+S G+AE    E ++  I  AD  LY+AK+ GRN+
Sbjct: 295 KIRIECQNTPFNQFDNLQQVYIDLTVSFGVAEASSAEQLNNAIMAADSKLYLAKEQGRNQ 354

Query: 255 VV 256
           V 
Sbjct: 355 VQ 356


>gi|320335021|ref|YP_004171732.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
 gi|319756310|gb|ADV68067.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
          Length = 568

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/181 (30%), Positives = 86/181 (47%), Gaps = 11/181 (6%)

Query: 86  SGSILKELFISYNR-------ISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFD 135
              + +EL  +  +       +++L+R D L+G+ N   F+  L     +    + +  D
Sbjct: 389 QRRLNEELQRANAQVQEHATELARLAREDALTGVANRRHFMDHLTLQARHAPTFAAIVLD 448

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
            D+FK IND FGHP GD+V+  +   L         V RLGGEEF    L +    A  +
Sbjct: 449 ADHFKSINDQFGHPTGDEVLRVIGRVLQQHVRAGDVVARLGGEEFGVLLLDADRARALDV 508

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A  +R  +          P  H+T+SAG+A     +    +I  AD+ LY AK+ GR+RV
Sbjct: 509 AERIRAALATHPW-ADVAPGAHVTVSAGVAHATEVDSPDALIALADRRLYQAKQGGRDRV 567

Query: 256 V 256
           V
Sbjct: 568 V 568


>gi|256827837|ref|YP_003156565.1| response regulator receiver modulated diguanylate cyclase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256577013|gb|ACU88149.1| response regulator receiver modulated diguanylate cyclase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 341

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 11/179 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
           +  EL     ++  LS +D L+G+ N   F          +      LS++  D+D+FK 
Sbjct: 149 LQAELEEKNRQLQLLSSLDGLTGIPNRRQFDEMLSLEWSRMAREKTPLSLIILDVDHFKL 208

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND +GH  GD  +  ++  L  +   P   V R GGEEFAA   G+S + A ++A  +R
Sbjct: 209 FNDRYGHLAGDSCLRRVALALATMLRRPADMVARYGGEEFAAILPGTSLEGAQVVAESMR 268

Query: 201 KIIENSQINISSGPSIHI-TISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +    I     P   + T+S G++          + +I  ADQ LY AK+ GR+R V
Sbjct: 269 QTVTELAIEHLDSPVRGVLTVSLGVSSVIPIPGCIPADLIQAADQGLYQAKQEGRDRWV 327


>gi|226939602|ref|YP_002794675.1| hypothetical protein LHK_00673 [Laribacter hongkongensis HLHK9]
 gi|226714528|gb|ACO73666.1| Predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Laribacter hongkongensis
           HLHK9]
          Length = 910

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 11/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFK 140
            L +   +  RI  L+  D L+GL N +            +        +++  DID+FK
Sbjct: 456 DLSDRQAAERRIQYLAYFDTLTGLPNRALLTDRANMALRGVEGDAAPALALLLLDIDHFK 515

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH  GD+++  ++ +L         V R GG+EF      ++   AA +A ++ 
Sbjct: 516 HINDTLGHSTGDQLLQSVAKRLQATVREGDTVSRQGGDEFVVLLPDANASRAASVAQEIL 575

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +    +       I +++S GIA         +T+   A+ A+Y AK+ GRN +  F 
Sbjct: 576 RRL--GFVCRIGEHDISVSVSIGIAMAPDDGTDFATLSKCAEIAMYRAKQEGRNTLRFFF 633

Query: 260 DIENN 264
                
Sbjct: 634 PEMQE 638


>gi|149374583|ref|ZP_01892357.1| diguanylate cyclase [Marinobacter algicola DG893]
 gi|149361286|gb|EDM49736.1| diguanylate cyclase [Marinobacter algicola DG893]
          Length = 372

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/182 (32%), Positives = 82/182 (45%), Gaps = 16/182 (8%)

Query: 86  SGSILKEL----FISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFF 134
           +G++L+E     F     +   +  D L GL N            +    Y   L+I+  
Sbjct: 189 AGTLLRERSWSAFARAETLHHWANTDPLCGLANRRGADRFLSAEAAQADRYQRPLTIILI 248

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID FK IND++GH VGD VI   +  L           R GG+EF  A  G   + A  
Sbjct: 249 DIDEFKSINDDYGHEVGDAVIREFAAILSKTVREVDLAARWGGDEFLVATPGVDLRSARH 308

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            A   R+ IE + I       + +T + GIAE    + I   I RAD  LY AK +GRNR
Sbjct: 309 AAQRCRRAIERAPI-----AGVSVTATVGIAEYLPGQGIEDAISRADAMLYRAKAAGRNR 363

Query: 255 VV 256
           V+
Sbjct: 364 VI 365


>gi|134093674|ref|YP_001098749.1| hypothetical protein HEAR0398 [Herminiimonas arsenicoxydans]
 gi|133737577|emb|CAL60620.1| conserved hypothetical protein; putative GGDEF domain
           [Herminiimonas arsenicoxydans]
          Length = 475

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
               + + +  D L+G  N   F  +              LS+ F DID+FKQ+ND +GH
Sbjct: 300 RQRELEEKTHRDVLTGAHNRRYFDEAFKHEFAVASRQGWPLSVAFLDIDHFKQVNDTYGH 359

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GDK +  LS  +           R GGEEF     G+  +EA I+ N +R+ + +   
Sbjct: 360 AAGDKALIALSRIIATQIRGSDIFVRYGGEEFVLLFPGTVAEEALIVLNRIRQAVASY-C 418

Query: 209 NISSGPSIHITISAGIAERCHK----EPISTIIYRADQALYVAKKSGRNRVV 256
           +     + H+TISAG+A    +    E    ++  AD ALY AK++GRN+++
Sbjct: 419 HTYDTATFHLTISAGLAFHMDEDMKHETAEGLLRTADNALYTAKQNGRNQII 470


>gi|73541330|ref|YP_295850.1| diguanylate cyclase/phosphodiesterase [Ralstonia eutropha JMP134]
 gi|72118743|gb|AAZ61006.1| diguanylate cyclase/phosphodiesterase [Ralstonia eutropha JMP134]
          Length = 879

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 11/182 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
            + E   +   I   +  D L+ L N   F   L    E+       L+++F D+D FK+
Sbjct: 437 DMTEKRQAEEVIRHQANFDALTDLPNRRLFFERLEQEIERSRGTQDVLALLFIDLDRFKE 496

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLR 200
           +ND  GH  GD ++   + ++         V RL G+EF        +   A  +A  + 
Sbjct: 497 VNDTLGHDQGDLLLLEAARRIAASVRASDTVARLAGDEFTVILPAVGDAGVAGGIAEAIL 556

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + I        +G  + ++ S G+A      +    ++  AD A++ AK+ GRNR   F+
Sbjct: 557 QQIAA--PYRLAGELVVVSASIGVATYPKDADNAEALLVYADHAMFAAKEEGRNRWKIFT 614

Query: 260 DI 261
             
Sbjct: 615 QA 616


>gi|114046788|ref|YP_737338.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113888230|gb|ABI42281.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 578

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/193 (32%), Positives = 92/193 (47%), Gaps = 12/193 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEK 128
           IT +L L  +  S+   L     ++  ++  D L+G  N     S +         +N  
Sbjct: 378 ITDNLELQQMVSSLET-LKTYAAQVKAMAETDGLTGCYNRRYLDSQIKKELSYANDHNMP 436

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGS 187
           LS+V FDID FK+ ND +GH  GD+ +  + D    +       + R GGEEF      S
Sbjct: 437 LSVVMFDIDNFKEFNDKYGHVAGDQCLKQVVDAAKSILQRPTDILARYGGEEFTLLLPSS 496

Query: 188 SEQEAAILANDLRKIIENSQINI-SSGPSIHITISAGIAERCHKEPIST--IIYRADQAL 244
             ++A  +A  LR+ I    I   SS  S  +TIS GIA     + +    +I  AD+AL
Sbjct: 497 HCEDAYRIAERLRETIMELAIPHQSSSHSGVVTISLGIACWQPAQSLDANLVISDADEAL 556

Query: 245 YVAKKSGRNRVVC 257
           Y AK++GRNR + 
Sbjct: 557 YQAKQAGRNRTIA 569


>gi|238795416|ref|ZP_04638931.1| Diguanylate cyclase [Yersinia mollaretii ATCC 43969]
 gi|238720535|gb|EEQ12336.1| Diguanylate cyclase [Yersinia mollaretii ATCC 43969]
          Length = 313

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 106/228 (46%), Gaps = 10/228 (4%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR 99
              + IA   L        +  E   ++  + + + I    LLG ++    K L  +   
Sbjct: 88  GLALQIACSLLTAWIFNLPFKPETSPLQVYACLPMIIVYPSLLGLVTYRTAKRLAENKEE 147

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + ++S  D L+GL N   +   L         Y    +++  DID FK IND FGH VGD
Sbjct: 148 LLRISVRDGLTGLYNRRHWEHQLHNQFDSCRRYQHGATLILLDIDNFKSINDTFGHAVGD 207

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             I  L+++L++       VGR GG+EF A    ++ ++   +   +++ + +     + 
Sbjct: 208 DAITVLAEELLLGLRAIDIVGRYGGDEFGAILPNTTAEQTREVLTRIQEKLADLVF--AQ 265

Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            PS+ + +SAGIA+  H        +  AD ALY+AK +GRNR+   S
Sbjct: 266 APSLQLRVSAGIADYRHDMINYQQWLKAADSALYLAKDNGRNRIELAS 313


>gi|221197349|ref|ZP_03570396.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Burkholderia multivorans CGD2M]
 gi|221204022|ref|ZP_03577040.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Burkholderia multivorans CGD2]
 gi|221176188|gb|EEE08617.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Burkholderia multivorans CGD2]
 gi|221183903|gb|EEE16303.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Burkholderia multivorans CGD2M]
          Length = 659

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 93/192 (48%), Gaps = 19/192 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDID 137
           SG  + E   +  R+++L+  D L+GL N  A    + +           ++ I+F D+D
Sbjct: 210 SGIDITEERNAQQRLTELANTDVLTGLPNRHAISERIRTVIAQQTGDTPGQVGILFLDLD 269

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAA 193
            FK++ND++GH  GD+++  +S  +     +   + RLGG+EF       +    E  A 
Sbjct: 270 NFKRVNDHYGHITGDRLLQDVSAIINGCLPSGATLARLGGDEFLVLFEQGTRALLEATAQ 329

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
           I+   LR  I    +       ++ + S GIA    H + + T+I  AD A+YVAK++G+
Sbjct: 330 IILERLRTPIHLGLM------EVYTSCSIGIAMHPQHGDSLETLIRNADTAMYVAKEAGK 383

Query: 253 NRVVCFSDIENN 264
           +    FS   N 
Sbjct: 384 HTYRVFSLEMNQ 395


>gi|319427769|gb|ADV55843.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella putrefaciens 200]
          Length = 573

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 11/187 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            S+   L  S+ ++ +L+  D L+ L+N   F       I+     N  L+++  D+D F
Sbjct: 123 ASMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNRAIARAKRSNNYLAVILLDLDDF 182

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILAND 198
           K IND  GH  GD ++  ++ +L  V      + RLGG+EF         +    I+AN 
Sbjct: 183 KAINDTLGHQTGDILLVKVASRLSEVLRDGDVIARLGGDEFVVLVTDDDYKYFPMIVANR 242

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
           L K  E  ++       + I  S G+A         S ++  AD A+Y AKK GRN++  
Sbjct: 243 LLKAFE--EVFCLGDNDVLIGASIGVAFYNEAASDSSELMKCADIAMYRAKKMGRNQIQF 300

Query: 258 FSDIENN 264
           +S+  + 
Sbjct: 301 YSEALDR 307


>gi|307151276|ref|YP_003886660.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
 gi|306981504|gb|ADN13385.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
          Length = 801

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/198 (27%), Positives = 89/198 (44%), Gaps = 16/198 (8%)

Query: 77  TISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSY------ 125
            ++ +LG +  S L++      R       + ++ID L+ + N   F   L         
Sbjct: 600 LVARVLGRLERSRLRQQLDDLRRQQSQDWQEKAKIDPLTKIANRLTFDEFLQQQWQYHAQ 659

Query: 126 -NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAA 183
            ++ LS++F D+D+FK  ND +GH  GD  +  ++  L            R GGEEFA  
Sbjct: 660 EHQHLSLIFCDVDFFKAYNDCYGHLAGDMCLRQIARILKESVQPNRDLPARYGGEEFALI 719

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGI--AERCHKEPISTIIYRA 240
              +  + A  +A  ++  +   QI  S+   S  +T+S GI          +  ++  A
Sbjct: 720 LPNTDLKGALQVAERIQHTLAQVQIPHSASCVSQFVTLSIGITGTVPTEGHRLQNLVNTA 779

Query: 241 DQALYVAKKSGRNRVVCF 258
           DQALY AKK+GRN    +
Sbjct: 780 DQALYAAKKAGRNTYCLY 797


>gi|288959257|ref|YP_003449598.1| signal transduction protein [Azospirillum sp. B510]
 gi|288911565|dbj|BAI73054.1| signal transduction protein [Azospirillum sp. B510]
          Length = 746

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 75/183 (40%), Gaps = 11/183 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKL--SIVFFDIDYFKQINDN 145
                 ++ + +  D L+GL N       L          +L  +++F D+D FK +ND 
Sbjct: 284 RRRYEEQLYRQAHFDELTGLANRLLTRDRLEQAIVNSRRGQLTSALLFIDLDNFKNVNDT 343

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIE 204
            GH  GD+++   + +L  +      + R+GG+EF       +  +AA  +A  +     
Sbjct: 344 LGHEAGDRLLKAAAGRLSTIIRQGDTLARMGGDEFLVVLPCIAGTDAARGVAERVLDAF- 402

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                   G    +T S GIA           ++  AD ALY AK+ GRNR   F+   N
Sbjct: 403 -VPPFRIGGQDHFVTASIGIALFPTDGADGPDLMRSADLALYRAKERGRNRYEFFTAEIN 461

Query: 264 NTC 266
              
Sbjct: 462 ERA 464


>gi|296137587|ref|YP_003644829.1| diguanylate cyclase [Thiomonas intermedia K12]
 gi|295797709|gb|ADG32499.1| diguanylate cyclase [Thiomonas intermedia K12]
          Length = 523

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 92/189 (48%), Gaps = 12/189 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKL-SIV 132
           ++ G +  S  K L     ++  L+  D L+GL N   F + +          +    I+
Sbjct: 339 IVTGMVEISAQKHL---EQQLRALAHTDPLTGLQNRRGFFAMVEHALRTRPAGQPGPCIM 395

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FKQIND +GHPVGD+++   +  ++ +        R+GGEEF          +A
Sbjct: 396 LIDLDHFKQINDRYGHPVGDEILVEFAQVVLSLLREGDVFARMGGEEFCILLAHMRASQA 455

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSG 251
             +A  +R+ +       S+G  + +++S GIA      + I  ++  ADQA+Y AK+ G
Sbjct: 456 LEVAERVREFVAAHPFQTSAGV-VRLSLSLGIAGCDAPVQSIDRVLSMADQAMYRAKQGG 514

Query: 252 RNRVVCFSD 260
           RNR   + D
Sbjct: 515 RNRTELYCD 523


>gi|92118971|ref|YP_578700.1| diguanylate cyclase/phosphodiesterase [Nitrobacter hamburgensis
           X14]
 gi|91801865|gb|ABE64240.1| diguanylate cyclase/phosphodiesterase [Nitrobacter hamburgensis
           X14]
          Length = 781

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 86/183 (46%), Gaps = 12/183 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
            + E   +  +IS L+R D L+ L N  +F   +          +   +++F D+D FKQ
Sbjct: 327 DITERRKAEAKISHLARFDSLTELPNRLSFRDEIERLLAIANSESRLSALLFIDLDQFKQ 386

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND-L 199
           IND  GHP GD+++  ++D+L  +     FV R GG+EF        S +EAA L+   +
Sbjct: 387 INDTLGHPCGDRLLCIVADRLRGMLRPDDFVARFGGDEFVVFQQNIQSAEEAAALSRRVV 446

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++ E  +I       + I  S GIA          ++ +AD ALY AK  GR     F 
Sbjct: 447 ERLTERYEI---DRHLVEIGASIGIALTSPGVTADNLLKQADMALYRAKAGGRGTFCFFR 503

Query: 260 DIE 262
           +  
Sbjct: 504 NEM 506


>gi|27375707|ref|NP_767236.1| hypothetical protein bll0596 [Bradyrhizobium japonicum USDA 110]
 gi|27348845|dbj|BAC45861.1| bll0596 [Bradyrhizobium japonicum USDA 110]
          Length = 833

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 64/267 (23%), Positives = 114/267 (42%), Gaps = 15/267 (5%)

Query: 6   KDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIA-TVIFIANIFLFYIGLTPFYGLEYI 64
           + +  ++    + L + +PH  +I   +   I  + T    A  FL  +   PF  +   
Sbjct: 301 ERYARLYQLPPELLRTGTPHADIIRHRVVTGILKSDTSEGAAEQFLSKLAALPFDAVSSR 360

Query: 65  LVENLSLVIISITISLLLG--YISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           + E     +I +T   + G  +++  + + E   S  +I+ +++ D L+ L N       
Sbjct: 361 IDEFTDGRLICVTRQPMAGGGWVATHLDVTEQRRSEAKIAHMAQHDALTDLPNRVLLRER 420

Query: 122 LGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           +             L+++  D+D FK++ND  GHP GD ++  ++ +L         + R
Sbjct: 421 MEHAIAVTRNGGLDLAVLMLDLDRFKEVNDTLGHPTGDSLLRAVATRLRECTTETALIAR 480

Query: 175 LGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           LGG+EFA     ++   EAA LA ++RK +   +        + +  S GIA        
Sbjct: 481 LGGDEFAVIDYVTNPAVEAAALAENIRKAL--CEPFDLGDHRVTVGTSIGIAIAPRDGND 538

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFS 259
              I+  AD ALY AK  GR     F 
Sbjct: 539 SDVIMKSADLALYSAKSGGRGAFRFFE 565


>gi|311696761|gb|ADP99634.1| diguanylate cyclase [marine bacterium HP15]
          Length = 366

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 72/262 (27%), Positives = 119/262 (45%), Gaps = 19/262 (7%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFF-----SIFIATVIFIANIFLFYIGLTPFYGLE 62
           FL I L  E ++ +F     M   +         + ++    I    ++YI L    G  
Sbjct: 94  FLVIMLLPEASVSAFVWVLMMPVLAYLLLGKKEGMILSAPFMIVGGVIYYIHLGQV-GNP 152

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           + +++ L++V+    +   +    G        +  R+  +++ D L+GL N S F  +L
Sbjct: 153 HAMIDLLNMVLCGALMLAFIHLYEGR----REEAEQRLVDMAQTDALTGLANRSNFQGTL 208

Query: 123 GS---YNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                  E+     ++V  DID+FK +ND  GH  GD V+  +S  L     +  FVGRL
Sbjct: 209 NRTIAEGERSGIGFALVVMDIDHFKVVNDTLGHEAGDFVLKNISRCLTERLRSTDFVGRL 268

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPIS 234
           GGEEF          +A +L ++LR+ I + ++       I +T S GIA    H     
Sbjct: 269 GGEEFGLILRDVKPADAFVLMDELRQRISDRELPYGD-ARIRVTASFGIAHWPDHGREAE 327

Query: 235 TIIYRADQALYVAKKSGRNRVV 256
           ++   AD+ LY  K++GRN VV
Sbjct: 328 SLFRVADRWLYSGKRAGRNCVV 349


>gi|114563098|ref|YP_750611.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114334391|gb|ABI71773.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 340

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 10/178 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQI 142
           +  L      +S+++  D L+ L N  ++         K        S++  DID FK  
Sbjct: 162 IANLKDEMENLSKVAMTDELTSLKNRRSYELFAAEQMTKFVDTQTVCSLLMIDIDNFKMF 221

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH +GDKV+A+++  +         V R GGEEF      +   +A  +A  +R+ 
Sbjct: 222 NDTFGHLIGDKVLAYVALAMKHTVKGDDLVARYGGEEFVVMLPNAKLIDAVNVAEKIRER 281

Query: 203 IENSQINISSGPS---IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I   Q++I         HIT+S G+A     + + T++ RAD+ LY+AK +G+N V  
Sbjct: 282 IALKQLSIGKEKKQNLGHITVSIGVATIQTGDDVDTLLSRADEQLYIAKAAGKNCVKF 339


>gi|294624059|ref|ZP_06702817.1| signal GGDEF domain protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292601642|gb|EFF45621.1| signal GGDEF domain protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 194

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/172 (33%), Positives = 86/172 (50%), Gaps = 8/172 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
           L  +   + + +  D L+GL N +  +S L             L+I  FD+D+FK +ND 
Sbjct: 16  LEEARATLHEQAIRDGLTGLFNRAYIVSLLNKEVSSANRSRVALAIAMFDLDHFKSVNDT 75

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GHP GD V+  ++ +L      P  VGR GGEE  A   G     +A L++ L   +  
Sbjct: 76  YGHPAGDTVLRTVASRLTENIRAPDQVGRYGGEELLAIMPGLQPPASARLSD-LLASVAG 134

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             I +  G  + +T S GIA     E  + ++ RAD+ALY AK  GRNR+V 
Sbjct: 135 RPIELDGGIQLVVTSSIGIAWLRPSETAAELLRRADKALYKAKHEGRNRIVI 186


>gi|225871899|ref|YP_002753353.1| GGDEF domain protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793514|gb|ACO33604.1| GGDEF domain protein [Acidobacterium capsulatum ATCC 51196]
          Length = 641

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 84/173 (48%), Gaps = 9/173 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
           L  +  ++   +  D L+GL NH   +  L             LS++  DID+FK+IND 
Sbjct: 455 LQRASEQMRHYAEHDGLTGLWNHRIMMERLRGEVERSRRDGTPLSVILADIDHFKRINDE 514

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GHP+GD V+  +S  L  +     +VGR GGEEF     GS    A   A  LR+ +E 
Sbjct: 515 HGHPMGDLVLKEISVLLERLVRPYDWVGRYGGEEFLIILPGSEFDVACSRAEQLRRAVEM 574

Query: 206 SQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           ++I     P + +T S G+A     E     +I   D ALY AK SGRN VV 
Sbjct: 575 AEIGNGERP-LRVTSSFGVASGGSMEHGAEEMIRVVDAALYRAKASGRNCVVA 626


>gi|229514005|ref|ZP_04403467.1| sensory box/GGDEF family protein [Vibrio cholerae TMA 21]
 gi|229524362|ref|ZP_04413767.1| sensory box/GGDEF family protein [Vibrio cholerae bv. albensis
           VL426]
 gi|254285970|ref|ZP_04960931.1| sensory box/GGDEF family protein [Vibrio cholerae AM-19226]
 gi|150423880|gb|EDN15820.1| sensory box/GGDEF family protein [Vibrio cholerae AM-19226]
 gi|229337943|gb|EEO02960.1| sensory box/GGDEF family protein [Vibrio cholerae bv. albensis
           VL426]
 gi|229349186|gb|EEO14143.1| sensory box/GGDEF family protein [Vibrio cholerae TMA 21]
          Length = 579

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 11/179 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +LS +D L+ + N   F   L           + LSI+  D+DYFK  N
Sbjct: 397 EQLEAANQELERLSFLDSLTHVANRRRFDEQLHTLWHLHVREGKPLSIILCDVDYFKDYN 456

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH +GD+ +  ++     V       V R GGEEF      + +  A ++A  + + 
Sbjct: 457 DAYGHLMGDETLKQIAIAFTQVANRHSDCVARYGGEEFGILLPNTPQSGAILVAERIHEK 516

Query: 203 IENSQINISSGPSI-HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +    I          IT+S GI       ++    ++  AD+ALY AK +GRN+   +
Sbjct: 517 VRGLAIPHDHSKVADRITVSLGIVTLIPRPEDVPEQMVELADRALYQAKANGRNQTSIY 575


>gi|126740131|ref|ZP_01755821.1| diguanylate cyclase, putative [Roseobacter sp. SK209-2-6]
 gi|126718950|gb|EBA15662.1| diguanylate cyclase, putative [Roseobacter sp. SK209-2-6]
          Length = 598

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 77/171 (45%), Gaps = 8/171 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
            +++   S  D L+GL N      SL  +        + LS+V  D+D+FK+ NDN GH 
Sbjct: 400 RDQLQDQSVRDPLTGLFNRRHMNDSLRKFINSSQHSGKTLSLVAVDVDHFKKFNDNHGHD 459

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  +   +           R GGEEF     G S ++    A  LR+ IE   + 
Sbjct: 460 AGDMVLRAVGSVMEQTCEGDQIACRPGGEEFTLILPGLSREDVMTKAELLRQSIEAIVVR 519

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                   ITIS G+A    +      ++  AD+ALY AK  GRN++   S
Sbjct: 520 YGDKSLPRITISLGVAHYPANGAMPQELLRSADEALYEAKAKGRNQICIAS 570


>gi|90411613|ref|ZP_01219623.1| hypothetical GGDEF family protein [Photobacterium profundum 3TCK]
 gi|90327503|gb|EAS43856.1| hypothetical GGDEF family protein [Photobacterium profundum 3TCK]
          Length = 339

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/171 (34%), Positives = 83/171 (48%), Gaps = 5/171 (2%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNF 146
           +  L  +     + +  D L+G+LN  AF      Y   N  LS++  DID FK  NDNF
Sbjct: 165 ITTLREALAESQKEANEDALTGILNRRAFERDFQHYIENNTPLSLILLDIDKFKDFNDNF 224

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN- 205
           GH +GD+V+  ++ +L           R GGEEFA       +  A   A   R+  E  
Sbjct: 225 GHLMGDQVLKTIARRLKESCRDYAQAYRFGGEEFAIILPHKMKASARQQAETFRRAFERI 284

Query: 206 SQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S I+  +G  +  IT S G+AE+   E    +I RAD  +  AK+ GRNRV
Sbjct: 285 SVIDKKTGQRVNSITASFGVAEKQPNESGECLIDRADTFMNQAKQLGRNRV 335


>gi|78484542|ref|YP_390467.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78362828|gb|ABB40793.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Thiomicrospira crunogena XCL-2]
          Length = 507

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 87/183 (47%), Gaps = 11/183 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDID 137
           +  + + EL  +   +S L+  D ++GL N + F  +L  + E       K +++F D+D
Sbjct: 324 LVYTDITELKQTQQELSFLANTDIVTGLPNRNYFYQALEEWLEAFKDSGNKFTLMFLDLD 383

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA 196
            FK +ND  GH  GD ++  +S+ +           R+GG+EF       ++ ++   + 
Sbjct: 384 NFKTVNDTLGHDTGDHLLKSVSELIAEHIAEDTLFARVGGDEFVILCRAYTTPEQLNEIG 443

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
            +L +++  SQ        I I  S GIA    H     T++  ADQA+Y AK +G+ R 
Sbjct: 444 QNLNQLL--SQPFNIGDHEIKIGSSIGIALFPDHGSDKETLLKHADQAMYQAKNAGKGRY 501

Query: 256 VCF 258
             +
Sbjct: 502 RIY 504


>gi|116691653|ref|YP_837186.1| RNase II stability modulator [Burkholderia cenocepacia HI2424]
 gi|116649653|gb|ABK10293.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia
           HI2424]
          Length = 667

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 19/192 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDID 137
           SG  + E   +  R+++L+  D L+GL N  A    + +            + I+F D+D
Sbjct: 218 SGIDITEERNAQQRLTELANTDVLTGLPNRHAISERIHAAIAEEDANTRGHVGILFLDLD 277

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAA 193
            FK++ND++GH  GD+++  +S  +     +   + RLGG+EF      ++    E  A 
Sbjct: 278 NFKRVNDHYGHITGDRLLQDVSAIISGCLPSGATLARLGGDEFLVLFEHATRPLLEATAQ 337

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
           I+   LR  I    +       ++ + S GIA    H + + T+I  AD A+YVAK+ G+
Sbjct: 338 IILERLRTPIHLGLM------EVYTSCSIGIAMHPQHGDSLETLIRSADTAMYVAKEEGK 391

Query: 253 NRVVCFSDIENN 264
           +    FS   N 
Sbjct: 392 HTYRVFSLEMNQ 403


>gi|291447960|ref|ZP_06587350.1| integral membrane phosphodiesterase [Streptomyces roseosporus NRRL
           15998]
 gi|291350907|gb|EFE77811.1| integral membrane phosphodiesterase [Streptomyces roseosporus NRRL
           15998]
          Length = 1010

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 16/194 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKL-----SIVFFDI 136
            ++   + E      ++   +  D L+ L N + F + +       +      +++F D+
Sbjct: 526 LLNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTARVRQALGGRRAGDLGTAVLFIDL 585

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-------E 189
           D FKQ+ND  GH  GD+++     +L           RLGG+EFAA  +G         E
Sbjct: 586 DGFKQVNDTIGHQAGDELLIQAGRRLQESVRAGDTAARLGGDEFAALIMGDGTRDQGARE 645

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            +   +A+ LR  +  SQ        + +  S G+A        + ++  AD A+Y AK 
Sbjct: 646 YQVHEIADRLRLTL--SQPYRIGASEVRVAASIGVAFAEPAITPTDLMRNADLAMYRAKA 703

Query: 250 SGRNRVVCFSDIEN 263
            G++RV  ++    
Sbjct: 704 GGKDRVELYAPQMQ 717


>gi|254508246|ref|ZP_05120370.1| ggdef domain protein [Vibrio parahaemolyticus 16]
 gi|219548863|gb|EED25864.1| ggdef domain protein [Vibrio parahaemolyticus 16]
          Length = 683

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 112/248 (45%), Gaps = 14/248 (5%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS-LVIISITISLLLGYIS 86
           ++ F +F +I + +++           L         L  N S +   ++     LG+++
Sbjct: 162 ILLFDLFRNILLTSILLFFFYQKLSKPLVTLIDWVRSLQNNKSDIPPPTLYRDDELGHLA 221

Query: 87  G---SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDI 136
               S+ K+   +  +++QL+  D L+GL N S  +  LG         +E  ++ + D+
Sbjct: 222 KTFHSLWKDREAAEVKLNQLAYYDSLTGLANRSLLLQLLGKAIDDSNVRSETGALFYLDL 281

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK IND+ GH +GD ++  +S ++           R+GG+EFA     ++ ++A  LA
Sbjct: 282 DRFKTINDSLGHTIGDHLLKAISMRIEAWLKDDYTAARIGGDEFAILLPNTNAEKAHELA 341

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
             L  +I N          ++ ++S GIA           ++ +AD ALY AK SGRN+ 
Sbjct: 342 QQLLALISN--PYSIDDHQLYCSMSVGIALFPSVGNTNIDVLRQADTALYRAKVSGRNKY 399

Query: 256 VCFSDIEN 263
             +     
Sbjct: 400 TFYEPEMQ 407


>gi|171058324|ref|YP_001790673.1| PAS/PAC sensor-containing diguanylate cyclase [Leptothrix cholodnii
           SP-6]
 gi|170775769|gb|ACB33908.1| diguanylate cyclase with PAS/PAC sensor [Leptothrix cholodnii SP-6]
          Length = 755

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 96/208 (46%), Gaps = 12/208 (5%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G E+++ E++S  + +    L+        + E      +++  ++ D L+GL N     
Sbjct: 547 GSEHVVQESVS-PMFAAGGQLIGAVAVMHDVTEAHQLALKLAHRAQHDVLTGLPNRLLLH 605

Query: 120 SSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L             L+++FFD+D FK +ND+ GH  GD+++  ++D+L+         
Sbjct: 606 DRLHQGLQLARRNRTVLALMFFDLDRFKAVNDSHGHATGDELLCQVADRLLKQLRATDTA 665

Query: 173 GRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
            RLGG+EF        +  +A  +A  L + +   +          I+ S GIA      
Sbjct: 666 CRLGGDEFVVLLSQVEQASDAGDVATHLLEAL--CKPYQLGKHQADISASIGIACFPQDG 723

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCF 258
              +T++  AD A+Y AK+ GRNRVV F
Sbjct: 724 TDEATLMRNADAAMYQAKQQGRNRVVFF 751


>gi|304411133|ref|ZP_07392749.1| diguanylate cyclase with extracellular sensor [Shewanella baltica
           OS183]
 gi|307301744|ref|ZP_07581502.1| diguanylate cyclase with extracellular sensor [Shewanella baltica
           BA175]
 gi|304350668|gb|EFM15070.1| diguanylate cyclase with extracellular sensor [Shewanella baltica
           OS183]
 gi|306913782|gb|EFN44203.1| diguanylate cyclase with extracellular sensor [Shewanella baltica
           BA175]
          Length = 484

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 82/176 (46%), Gaps = 11/176 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           ++ ++L  S   +  LS  D L+ L N   F            S    + +V  DIDYFK
Sbjct: 310 TLRQQLEASNAELEFLSNHDPLTKLYNRHYFNRLFINNEQHDKSAKAGMCLVMIDIDYFK 369

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND  GH VGD+++  +S  L         V R GGEEF      SS      L   + 
Sbjct: 370 EINDTLGHNVGDRILEQVSQVLQHCVRESDVVARWGGEEFVILCQQSSLPLVESLCMRIA 429

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + I++ Q       ++ +T S G+A+    EP+     RAD+ALY AK  GRN++ 
Sbjct: 430 ERIKHYQFT----DNVQLTCSFGVAKLADNEPMMLCFERADRALYRAKAQGRNQMC 481


>gi|300312318|ref|YP_003776410.1| diguanylate cyclase with PAS/PAC sensor protein [Herbaspirillum
           seropedicae SmR1]
 gi|300075103|gb|ADJ64502.1| diguanylate cyclase with PAS/PAC sensor protein [Herbaspirillum
           seropedicae SmR1]
          Length = 611

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 100/222 (45%), Gaps = 13/222 (5%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
            A+  L +  L P  G+ ++  ++     +    +L  G+IS   + +       + + +
Sbjct: 385 AAHWTLEFRVLPPGQGVRWLRGQSRPRR-LDDGTTLWHGFIS--DISQSKAIELELQEFA 441

Query: 105 RIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPVGDKVIA 156
             D L+ L N   F+  L     ++        +++  D+D+FK+IND+ GH VGD V+ 
Sbjct: 442 LTDYLTQLPNRRYFMQRLQEEYSRIQRSVTAGAAVLMCDLDHFKRINDSLGHAVGDLVLR 501

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             +  L          GRLGGEEFA    G+ +Q AA  A  L+       + I     +
Sbjct: 502 HFATVLKSQLRRSDTAGRLGGEEFAIILTGADQQAAADFAARLQNRFAGQPL-IHDEREV 560

Query: 217 HITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVC 257
            +T+S G+A           ++  +D ALY AK+ GRNRV  
Sbjct: 561 KVTLSIGVALMQADSAGQEQVLRASDDALYRAKEKGRNRVEF 602


>gi|146341041|ref|YP_001206089.1| signaling protein [Bradyrhizobium sp. ORS278]
 gi|146193847|emb|CAL77864.1| putative signaling protein containing multidomains (PAS/GGDEF/EAL)
           [Bradyrhizobium sp. ORS278]
          Length = 903

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYF 139
           +   + E   +  +I+ L+  D L+ L N + F   L           +L++ + DID F
Sbjct: 451 THEDITERRRAEQQITHLAHYDALTELPNRTLFHERLKQEMLGVAQGRQLALHYIDIDEF 510

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K +ND  GH +GD+++  +   L    GT  FV RLGG+EFA       S ++ + L +D
Sbjct: 511 KGVNDTLGHLIGDELLKSVGRSLQACVGTAGFVARLGGDEFAVVQTTIKSREDVSCLIDD 570

Query: 199 LRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   I   +  +  G  +    S G+A    H   +  I+  AD A+Y AK +GR     
Sbjct: 571 MLAAIRAPRDCL--GHQLTADASIGVALIPQHGTDLDQIMKNADLAMYAAKAAGRRTWRF 628

Query: 258 FSDIEN 263
           F    +
Sbjct: 629 FEPEMD 634


>gi|219848192|ref|YP_002462625.1| diguanylate cyclase with GAF sensor [Chloroflexus aggregans DSM
           9485]
 gi|219542451|gb|ACL24189.1| diguanylate cyclase with GAF sensor [Chloroflexus aggregans DSM
           9485]
          Length = 586

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/189 (29%), Positives = 93/189 (49%), Gaps = 12/189 (6%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129
            + LL   ++G++   +  ++  I  L+  D L+ L+N   F       I     Y   +
Sbjct: 390 ALELLAATVAGALHNAMRFAH--IQSLTITDVLTELVNRRHFFQILHHEIERSRRYRTPV 447

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           SI   D+D+FKQ+ND +GH VGDK++  ++ +          + R GGEE+      +  
Sbjct: 448 SIAMIDLDHFKQVNDTYGHVVGDKLLREVALRCRRYVRDVDILARYGGEEYGLILPETRY 507

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVA 247
           + A + A  LR+ + +    I  G  I +T+S G+A          S+++  AD+ALY+A
Sbjct: 508 ESALLAAERLRQHVMSVPFTI-DGHLISMTLSIGVASFQADVHPDPSSLVVDADRALYLA 566

Query: 248 KKSGRNRVV 256
           K+ GRN V 
Sbjct: 567 KQRGRNCVC 575


>gi|187921353|ref|YP_001890385.1| PAS/PAC/Chase sensor-containing diguanylate
           cyclase/phosphodiesterase [Burkholderia phytofirmans
           PsJN]
 gi|187719791|gb|ACD21014.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Burkholderia phytofirmans PsJN]
          Length = 1037

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 24/228 (10%)

Query: 58  FYGLEYILVENLSLVIISITISLLLG-------YI-SGSILKELFISYNRISQLSRIDCL 109
           + G  +   +N  +    +TIS ++        Y+ +   + E  I+  RI +L+  D L
Sbjct: 544 WQGEVWDRRKNGEVYPKWLTISAVMSDNGTVSHYVGTHHDITERKIAEERIKELAFFDAL 603

Query: 110 SGLLNHSAFISSLGS------YNEKL-SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           + L N +  +  L         NE   +++F D+D+FK +ND  GH  GD ++  ++ +L
Sbjct: 604 TRLPNRTLLLDRLRQAITASARNEACGALLFIDLDHFKTLNDTLGHDKGDLLLQQVARRL 663

Query: 163 VVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAA----ILANDLRKIIENSQINISSGPSI 216
                    V R+GG+EF      L  + QEAA     +   +  ++             
Sbjct: 664 ADSVLESDTVARVGGDEFVVVLGNLHKNRQEAANQTEAVGERILAVL--GSPYHLGKIEY 721

Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             + S G    R H+  I  ++ +AD A+Y +K+ GRN V  F     
Sbjct: 722 RTSASIGATVFRGHQASIDELLKQADLAMYKSKERGRNAVRFFDPDMQ 769


>gi|114797095|ref|YP_760220.1| putative diguanylate cyclase/response regulator [Hyphomonas
           neptunium ATCC 15444]
 gi|114737269|gb|ABI75394.1| putative diguanylate cyclase/response regulator [Hyphomonas
           neptunium ATCC 15444]
          Length = 313

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 13/193 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----- 130
           I  ++L   ++  +  EL    ++++ L+  D L+GL N      +L +   +L+     
Sbjct: 107 IQPAILRARVTNHM--ELKSLRDQLANLAVTDALTGLKNRRYLERTLRAECARLARDEAW 164

Query: 131 --IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGS 187
             ++  DID+FKQ ND +GHP GD+ IA ++  L   V        R GGEEFA      
Sbjct: 165 LSVIMLDIDFFKQFNDTYGHPAGDRCIAMIAATLKRVVKRASDTPARYGGEEFACILPDL 224

Query: 188 SEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQAL 244
              EA I+A ++R+ +    I +I S    ++T+S G+A       I   T I  ADQ L
Sbjct: 225 GPAEAEIVAQEIRRQVHALNIPHIRSQAEPYVTVSIGVASARCHSSIEPGTWITFADQEL 284

Query: 245 YVAKKSGRNRVVC 257
           Y +K +GR+RV  
Sbjct: 285 YRSKAAGRDRVSV 297


>gi|66047070|ref|YP_236911.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63257777|gb|AAY38873.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 763

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 10/183 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSY---NEKLSIVFFDIDYF 139
            ++L +L  +   + Q++  D L+ L+N   F       L  +   N  L+++F DID+F
Sbjct: 273 NALLTQLDQARVSLQQVAHYDPLTNLINRRGFNQIFAEKLQEHTYNNGMLAVMFLDIDHF 332

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND+ GH  GD+++  ++D++         V R GG+EF         +EA  LA+ +
Sbjct: 333 KRINDSLGHDAGDELLKVIADRIRGATRVQDVVARFGGDEFCILLSIPDYEEARHLAHRV 392

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + ++ +     +G  + +T S GIA           ++  AD ALY +K  GRN V  F
Sbjct: 393 MQKMKETI--ALAGRRMVMTTSIGIAVFPRDGSTCDELLKHADLALYQSKDKGRNGVNFF 450

Query: 259 SDI 261
           +  
Sbjct: 451 NPA 453


>gi|89092412|ref|ZP_01165366.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           withPAS/PAC sensor [Oceanospirillum sp. MED92]
 gi|89083500|gb|EAR62718.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           withPAS/PAC sensor [Oceanospirillum sp. MED92]
          Length = 1010

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 14/187 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           S +  +     ++  ++  D L+GL N    I  L           + L++ + D+D FK
Sbjct: 552 SDITTIKEQQKKLELIANFDPLTGLPNRRHIIELLHEGMANAMKQMKTLAVFYLDLDGFK 611

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+++  L++++    G    VGR+GG+EF  A     E+  ++  + L 
Sbjct: 612 DINDTYGHEYGDQLLVTLANRMSKAMGQQDIVGRVGGDEFIGAFF---EEPNSVFTDKLH 668

Query: 201 KIIENSQINI-SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
            I+E     I   G  + ++ S G+     +       ++  ADQA+Y AK +G+NR   
Sbjct: 669 HILEQLAKPIFVEGYKLQVSASIGVTLYPQQRSTDADKLVREADQAMYQAKLAGKNRYHF 728

Query: 258 FSDIENN 264
           F D E +
Sbjct: 729 F-DAEKD 734


>gi|120599088|ref|YP_963662.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|146292841|ref|YP_001183265.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
 gi|120559181|gb|ABM25108.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|145564531|gb|ABP75466.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
 gi|319426153|gb|ADV54227.1| diguanylate cyclase [Shewanella putrefaciens 200]
          Length = 341

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 12/210 (5%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKE------LFISYNRISQLSRIDCLSGL 112
           + +E +L    SLV  S  I     + +G + K       L     +  +    D L+G 
Sbjct: 128 FSVEQVLDLVRSLVKESDNIRSSTEFFTGQLQKAQTEIDALKKKLEQTEKDVLYDALTGC 187

Query: 113 LNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
           LN  AF +     L    E   ++  DID+FK  ND++GH +GD+V+  ++ +L      
Sbjct: 188 LNRRAFDADFSGMLTQAPEGTCVILVDIDHFKVFNDSYGHQMGDQVLRAVAKRLQESCRD 247

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITISAGIAE 226
            + + R GGEEFA     S  + A  LA  +R+ +E   + +      I +I+ S G+A+
Sbjct: 248 GIKLYRFGGEEFAILVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDERIDNISASFGVAQ 307

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              K+    +I +AD+ LY AK+ GRNRV+
Sbjct: 308 WQEKQTGLQLIEKADKLLYEAKRLGRNRVM 337


>gi|15642367|ref|NP_232000.1| sensory box/GGDEF family protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121588207|ref|ZP_01677951.1| sensory box/GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121727488|ref|ZP_01680606.1| sensory box/GGDEF family protein [Vibrio cholerae V52]
 gi|147673373|ref|YP_001217873.1| sensory box/GGDEF family protein [Vibrio cholerae O395]
 gi|153819128|ref|ZP_01971795.1| sensory box/GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|153822771|ref|ZP_01975438.1| sensory box/GGDEF family protein [Vibrio cholerae B33]
 gi|227082494|ref|YP_002811045.1| PAS/GGDEF family protein [Vibrio cholerae M66-2]
 gi|229507564|ref|ZP_04397069.1| sensory box/GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229512240|ref|ZP_04401719.1| sensory box/GGDEF family protein [Vibrio cholerae B33]
 gi|229519376|ref|ZP_04408819.1| sensory box/GGDEF family protein [Vibrio cholerae RC9]
 gi|229607070|ref|YP_002877718.1| sensory box/GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254849492|ref|ZP_05238842.1| sensory box/GGDEF family protein [Vibrio cholerae MO10]
 gi|255746951|ref|ZP_05420896.1| sensory box/GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262161505|ref|ZP_06030615.1| sensory box/GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|262168357|ref|ZP_06036054.1| sensory box/GGDEF family protein [Vibrio cholerae RC27]
 gi|298500268|ref|ZP_07010073.1| sensory box/GGDEF family protein [Vibrio cholerae MAK 757]
 gi|9656940|gb|AAF95513.1| sensory box/GGDEF family protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547549|gb|EAX57652.1| sensory box/GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121630156|gb|EAX62558.1| sensory box/GGDEF family protein [Vibrio cholerae V52]
 gi|126510318|gb|EAZ72912.1| sensory box/GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|126519716|gb|EAZ76939.1| sensory box/GGDEF family protein [Vibrio cholerae B33]
 gi|146315256|gb|ABQ19795.1| sensory box/GGDEF family protein [Vibrio cholerae O395]
 gi|227010382|gb|ACP06594.1| PAS/GGDEF family protein [Vibrio cholerae M66-2]
 gi|227014265|gb|ACP10475.1| PAS/GGDEF family protein [Vibrio cholerae O395]
 gi|229344065|gb|EEO09040.1| sensory box/GGDEF family protein [Vibrio cholerae RC9]
 gi|229352205|gb|EEO17146.1| sensory box/GGDEF family protein [Vibrio cholerae B33]
 gi|229355069|gb|EEO19990.1| sensory box/GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229369725|gb|ACQ60148.1| sensory box/GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254845197|gb|EET23611.1| sensory box/GGDEF family protein [Vibrio cholerae MO10]
 gi|255735353|gb|EET90753.1| sensory box/GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262023249|gb|EEY41953.1| sensory box/GGDEF family protein [Vibrio cholerae RC27]
 gi|262028816|gb|EEY47470.1| sensory box/GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|297540961|gb|EFH77015.1| sensory box/GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 579

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 11/179 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +LS +D L+ + N   F   L           + LSI+  D+DYFK  N
Sbjct: 397 EQLEAANQELERLSFLDSLTHVANRRRFDEQLHTLWHLHVREGKPLSIILCDVDYFKDYN 456

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH +GD+ +  ++     V       V R GGEEF      + +  A ++A  + + 
Sbjct: 457 DAYGHLMGDETLKQIAIAFTQVANRHSDCVARYGGEEFGILLPNTPQSGAILVAERIHEK 516

Query: 203 IENSQINISSGPSI-HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +    I          IT+S GI       ++    ++  AD+ALY AK +GRN+   +
Sbjct: 517 VRGLAIPHDHSKVADRITVSLGIVTLIPRPEDVPEQMVELADRALYQAKANGRNQTSIY 575


>gi|227823490|ref|YP_002827463.1| sensory box/GGDEF family protein [Sinorhizobium fredii NGR234]
 gi|227342492|gb|ACP26710.1| sensory box/GGDEF family protein [Sinorhizobium fredii NGR234]
          Length = 888

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 84/175 (48%), Gaps = 9/175 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDN 145
           EL  +  R+   +  D L+GL N       LG +       +++SI   D+D FKQIND 
Sbjct: 451 ELEAARYRMEFNALHDPLTGLPNRRFLDQILGDHARQFDARDRVSIFHIDLDRFKQINDT 510

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD+++   +  L        FV R+GG+EF     G + +E A LA+ + + +  
Sbjct: 511 MGHAAGDEILRHAAGLLRSSARESDFVARIGGDEFVIIRAGGNTEEDAALASSIIEAM-- 568

Query: 206 SQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
           S           I +S GIA +      ++ I+  AD ALY AK+ GRNR   F+
Sbjct: 569 STPVRYKDQECRIGVSIGIAAQAAATDELAQILVNADIALYEAKRRGRNRHETFT 623


>gi|220935625|ref|YP_002514524.1| response regulator receiver modulated diguanylate cyclase
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996935|gb|ACL73537.1| response regulator receiver modulated diguanylate cyclase
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 335

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/189 (30%), Positives = 84/189 (44%), Gaps = 15/189 (7%)

Query: 82  LGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSI 131
           +  +  ++L+    L  +  ++  LS  D L+GL N  A    L +           + +
Sbjct: 147 IARLQNTVLETSSALAAANRQLEYLSTTDPLTGLPNRRALNKRLEAVLLETQGRGGGMCV 206

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FKQIND +GH VGD+V+  LS +L +       V RLGGEEFA          
Sbjct: 207 GLLDVDHFKQINDTYGHDVGDEVLTTLSKRLRLALRPMDMVARLGGEEFALVMHFHDVDN 266

Query: 192 AAI-LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVA 247
               +   +   +       S G  I +T S G     H E    I  ++  AD+ LY A
Sbjct: 267 CNPGIFQRVLDTVSKDPFPTSEGQ-IPVTASIGACCYRHGEQMVTIQGMLKIADENLYRA 325

Query: 248 KKSGRNRVV 256
           K  GRNRVV
Sbjct: 326 KAEGRNRVV 334


>gi|217972032|ref|YP_002356783.1| diguanylate cyclase with extracellular sensor [Shewanella baltica
           OS223]
 gi|217497167|gb|ACK45360.1| diguanylate cyclase with extracellular sensor [Shewanella baltica
           OS223]
          Length = 484

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 82/176 (46%), Gaps = 11/176 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           ++ ++L  S   +  LS  D L+ L N   F            S    + +V  DIDYFK
Sbjct: 310 TLRQQLEASNAELEFLSTHDPLTKLYNRHYFNRLFINNEQHDKSARAGMCLVMIDIDYFK 369

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND  GH VGD+++  +S  L         V R GGEEF      SS      L   + 
Sbjct: 370 EINDTLGHNVGDRILEQVSQVLQHCVRESDVVARWGGEEFVILCQQSSLPLVESLCVRIA 429

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + I++ Q       ++ +T S G+A+    EP+     RAD+ALY AK  GRN++ 
Sbjct: 430 ERIKHYQFT----DNVQLTCSFGVAKLADNEPMMLCFERADRALYRAKAQGRNQMC 481


>gi|120601726|ref|YP_966126.1| diguanylate cyclase [Desulfovibrio vulgaris DP4]
 gi|120561955|gb|ABM27699.1| diguanylate cyclase [Desulfovibrio vulgaris DP4]
          Length = 550

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 74/180 (41%), Gaps = 12/180 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
            L      + +++  D L+GL N           +          S +  DID FK IND
Sbjct: 344 RLGEHMRALERMAVTDQLTGLHNRRYVAVEGAKVVDVCWRGGRPCSCLMADIDRFKTIND 403

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD V+   ++             R GGEEF   A  +  ++A ++A  LR    
Sbjct: 404 TYGHEAGDAVLQAFAEVFRGGLRWSDIGARHGGEEFVVIAPNADTRDAVVIAERLRVDAA 463

Query: 205 NSQINISSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              +    G  I  T+S G+A           +  ++ RAD ALY AK  GR+RV  + +
Sbjct: 464 ALVVEF-GGHVIRFTVSVGVASLDEHGGDGNLLEELLRRADTALYRAKAEGRDRVCVWRE 522


>gi|91203009|emb|CAJ72648.1| hypothetical protein kustd1903 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 516

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 61/216 (28%), Positives = 110/216 (50%), Gaps = 18/216 (8%)

Query: 61  LEYILVE-NLSLVIISITISLLLGYISGSILK------ELFISYNRISQLSRIDCLSGLL 113
           +E IL E N++L +I+++   +   +  + ++      +L     R+ +L+ ID L+ + 
Sbjct: 293 VEEILQEANIALSLINLSYEQMNKELIAAKMELQKLANDLEEKNKRLEKLANIDGLTDVY 352

Query: 114 NHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           NH  F + L +   +       +S+V FD+D+FK+ ND++GHP GD ++  L   +    
Sbjct: 353 NHRYFQNFLETEIRRSLRKKTSVSLVLFDVDHFKKFNDSYGHPAGDFILKELCKLVKKNL 412

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                + R GGEEF    + ++ ++AA +   LR++I  S I I       +T S G+A 
Sbjct: 413 RDYDLIARYGGEEFILVLVETAAEDAAEITEKLREVIA-SHIFIDDINEYKVTASFGVAT 471

Query: 227 RCHKEPI---STIIYRADQALYVAKKSGRNRVVCFS 259
               +        I  AD+ALY +KK GRN++  ++
Sbjct: 472 MSPAKDEFKQGDFIDFADKALYESKKKGRNKITAYT 507


>gi|317407292|gb|EFV87267.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Achromobacter xylosoxidans C54]
          Length = 665

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 16/189 (8%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D L+ L N  A  + L +        +  ++F D+D FK
Sbjct: 219 SGTDITEERQAQERLRVLANTDVLTNLPNRHAITTRLKTALAEGEGARGGVLFLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND++GH  GD+++  +S  +         + RLGG+EF      +     E  A  + 
Sbjct: 279 RINDHYGHGFGDRLLKSVSVAISSCLAPGQTLARLGGDEFLVLQEHAEAWQLEATAGRII 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             LR+      I       ++ + S GIA    H + + +++  AD A+YVAK++GR+  
Sbjct: 339 ERLREPFRQELI------EVYTSCSIGIAMYPEHGDDLDSVVRSADIAMYVAKEAGRHTY 392

Query: 256 VCFSDIENN 264
             F    + 
Sbjct: 393 RVFQPEMDR 401


>gi|270158864|ref|ZP_06187521.1| sensory box/GGDEF family protein [Legionella longbeachae D-4968]
 gi|269990889|gb|EEZ97143.1| sensory box/GGDEF family protein [Legionella longbeachae D-4968]
          Length = 766

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 11/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + +      ++ Q +  D L+ L N    I  +             L+ +F D+D+FK 
Sbjct: 325 DVTQRREMEQQLIQQATHDSLTELPNRVLLIDRVDQAILQAKKKGSILAFLFLDLDHFKM 384

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
            ND  GH +GD+++  +S++L++       V RLGG+EF        +EQ+A   A ++ 
Sbjct: 385 TNDTLGHSLGDRLLQAVSNRLLIATNDFDTVCRLGGDEFVILLHDIATEQQAEQKAEEIL 444

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           K I N  I I    ++ IT S GI+      +   +++  AD ++Y AK SGRN    + 
Sbjct: 445 KSIAN-PIRI-DQHNLKITGSIGISYYPKDGDDYESLMKNADLSMYHAKDSGRNTYRSYD 502

Query: 260 DIEN 263
              N
Sbjct: 503 KEMN 506


>gi|194292174|ref|YP_002008081.1| hypothetical protein RALTA_B1429 [Cupriavidus taiwanensis LMG
           19424]
 gi|193226078|emb|CAQ72025.1| conserved hypothetical protein; cyclic di-GMP synthetase domain
           (GGDEF); modular protein [Cupriavidus taiwanensis LMG
           19424]
          Length = 612

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 61/181 (33%), Positives = 83/181 (45%), Gaps = 3/181 (1%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--EKLSIVFFDIDYFKQI 142
           I    L+E      ++ Q +R D L+GLLN  A       Y   E  S+V  D+D FKQI
Sbjct: 427 ILRRKLRERAALTAQLEQQARTDSLTGLLNRRALELVSARYGAHESASLVLIDVDRFKQI 486

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GHP GD+V+  ++ Q+  +      + R GGEEFA         EAA LA  LR  
Sbjct: 487 NDRHGHPAGDQVLRNIATQMRALVPAEGVLARFGGEEFALWLPHGRPGEAAALAETLRAA 546

Query: 203 IENSQINISSGPSIHITISA-GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           I +  + +S    + +T S               +   AD A+Y AK  GRN V    D+
Sbjct: 547 IASRPVYLSGTTQLAVTASFGVAVGHGGAGNWQRLFGAADAAMYRAKAEGRNCVREAQDL 606

Query: 262 E 262
           E
Sbjct: 607 E 607


>gi|170736347|ref|YP_001777607.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia cenocepacia MC0-3]
 gi|169818535|gb|ACA93117.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia cenocepacia MC0-3]
          Length = 667

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 19/192 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDID 137
           SG  + E   +  R+++L+  D L+GL N  A    + +            + I+F D+D
Sbjct: 218 SGIDITEERNAQQRLTELANTDVLTGLPNRHAISERIHAAIAEEDANTRGHVGILFLDLD 277

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAA 193
            FK++ND++GH  GD+++  +S  +     +   + RLGG+EF      ++    E  A 
Sbjct: 278 NFKRVNDHYGHITGDRLLQDVSAIISGCLPSGATLARLGGDEFLVLFEHATRPLLEATAQ 337

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
           I+   LR  I    +       ++ + S GIA    H + + T+I  AD A+YVAK+ G+
Sbjct: 338 IILERLRTPIHLGLM------EVYTSCSIGIAMHPQHGDSLETLIRSADTAMYVAKEEGK 391

Query: 253 NRVVCFSDIENN 264
           +    FS   N 
Sbjct: 392 HTYRVFSLEMNQ 403


>gi|119773207|ref|YP_925947.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119765707|gb|ABL98277.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella amazonensis SB2B]
          Length = 305

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 85/174 (48%), Gaps = 14/174 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           +L    +R+  ++  D L+GL N    I         +  +   +++V  D+D+FK++ND
Sbjct: 123 QLKQQRDRLQSMAMHDQLTGLYNRHFLIECASQRLARVARHRNPMTLVLMDVDHFKRVND 182

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH VGDKV+  ++  L         V RLGGEEF    +  S   AA     LR ++E
Sbjct: 183 NYGHHVGDKVLIEVARLLSTNMRREDVVARLGGEEF-VMLMDCSLDNAAAKVEHLRHLLE 241

Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             + +      I +T S G+ E   +    S ++  AD  +Y AK  GRN VVC
Sbjct: 242 ALEPD-----GIKVTGSFGLVEASPYNADFSHLLVLADDGVYRAKTQGRNCVVC 290


>gi|308050711|ref|YP_003914277.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
 gi|307632901|gb|ADN77203.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
          Length = 514

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/192 (31%), Positives = 95/192 (49%), Gaps = 16/192 (8%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFF 134
           L     S+++ L     ++SQL+R D L+GL N  A           L  +   L+++  
Sbjct: 313 LASAFNSLMRMLAQQREQLSQLARTDALTGLANRRAMEEFLDEEWRRLCRHQRGLALMMV 372

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAA 193
           DID+FKQ ND+FGH  GD+V+A ++  L  V      +  R GGEEF  A       E  
Sbjct: 373 DIDHFKQFNDHFGHGTGDEVLAKVARVLESVTRRGGELASRWGGEEFVLAITEPKRDELE 432

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-------ISTIIYRADQALYV 246
            LA  + + I    I+ +SG S  +T+S GIA     +        ++ ++ +AD+ALY 
Sbjct: 433 RLAEVVAQRIGQLPIS-ASGISQRLTVSIGIAFVPAGQDPVALGLNLNEMMEQADRALYR 491

Query: 247 AKKSGRNRVVCF 258
            K +GR+ +  +
Sbjct: 492 VKSAGRDGIELW 503


>gi|158337434|ref|YP_001518609.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158307675|gb|ABW29292.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
          Length = 414

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/213 (24%), Positives = 107/213 (50%), Gaps = 15/213 (7%)

Query: 60  GLEYILVENLSLVIISIT-ISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNH 115
           GL+ I    + +  +++T + L++ Y+  S   +  ++      +++L+ +D L+ L N 
Sbjct: 191 GLKSIWTTLIVIGCLAVTSLILVISYLQNSNQILQAKVEAKTAALNRLAHLDGLTELANR 250

Query: 116 SAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
             F          +    + L+++  D DYFK+ ND +GH  GD  +  ++  +      
Sbjct: 251 RCFDQVLEQEWRRMQRQQKPLALIMCDADYFKRFNDAYGHQAGDHCLQKIACVINANVRR 310

Query: 169 PMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAE 226
              +  R GGEEFA     +  ++A ++A  +++ + + +I ++ S  + H+T+S GIA 
Sbjct: 311 TGDLATRYGGEEFAVIMPNTDHKQACLVAEKIQRAMLDLRIEHLQSEVADHVTLSIGIAS 370

Query: 227 RCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
              +     + ++  AD ALY AK +GRN+++ 
Sbjct: 371 TVPQPIYHPTHLVAVADAALYEAKVNGRNQIIV 403


>gi|46579825|ref|YP_010633.1| sensory box protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|46449240|gb|AAS95892.1| sensory box/GGDEF domain/EAL domain protein [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311234168|gb|ADP87022.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris RCH1]
          Length = 997

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 12/176 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQINDN 145
             S  +++  +  D L+GL N   F+  L    ++         ++++ D+D FK IND+
Sbjct: 546 HRSRQQLAHQAYHDPLTGLPNRLLFLDHLQLAMQRAARRTDAMFTVLYLDLDRFKIINDS 605

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIE 204
            GH +GD ++  ++  L         V R GG+EFA     + +   A  +A  +R+ + 
Sbjct: 606 LGHGIGDALLREVACTLRRCVRDVDTVARFGGDEFAILLEDTGNCAGAVRIARRIRESLA 665

Query: 205 NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
             Q    +G  +  T S GI  +         I+  AD A+Y AK+ G++R   F+
Sbjct: 666 --QPVNIAGHEVFTTASIGIVLQTRDYLTPEDILRDADTAMYRAKEMGKSRFKVFN 719


>gi|315182729|gb|ADT89642.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Vibrio furnissii NCTC 11218]
          Length = 993

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 95/209 (45%), Gaps = 8/209 (3%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
            YI V+    VI +     +    S + + E   S ++I Q++  D L+G+ N    +  
Sbjct: 522 HYIWVQLSGAVIHNTQGRPIRLVGSMTDITEQQESADKIHQMAYYDGLTGVANRRKLMEV 581

Query: 122 LGSYNEKL-----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
           +  + +       +++  D++ FK IND FGH VGD ++  +++ L         +GR G
Sbjct: 582 IEHHIQHHPNSTKAVMMMDLNRFKIINDTFGHQVGDALLCHVAEALQQTLRAEDIIGRFG 641

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPIST 235
           G+EF       ++ +A  LAN L + ++   +   +   +    S G+A    H      
Sbjct: 642 GDEFVFFCDVQNDYQAHELANRLLRAVKR-PMQYDNMELVG-EASIGVAFYPQHGVDGDE 699

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +I  AD A+Y AK+ G   VV F+   + 
Sbjct: 700 LIKNADVAMYRAKQLGGGEVVLFNSNMHE 728


>gi|217969746|ref|YP_002354980.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
 gi|217507073|gb|ACK54084.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
          Length = 843

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 11/179 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQ 141
           + +  L    +  S L+  D L+GL N       L          + L +   D+D FK 
Sbjct: 657 TDISALTAQRDHFSSLANFDALTGLPNRRLLDDRLQQAVGNARRGKPLVVCMLDLDGFKP 716

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND+ GH  GD+++  L+ ++  +      + RLGG+EF    +    + A      + +
Sbjct: 717 VNDSVGHAEGDRLLVELAQRMQHILRAGETLARLGGDEFVLLLVDGDFRPAL---ERVLE 773

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +  + + +S G    +T S G +   H  E  + ++  ADQALY AK++GRNR V F+
Sbjct: 774 -VTRAPVALSGGRFARVTASIGASAYRHGVEDGAQLLREADQALYRAKRAGRNRWVMFA 831


>gi|152988789|ref|YP_001350977.1| GGDEF domain-containing protein [Pseudomonas aeruginosa PA7]
 gi|150963947|gb|ABR85972.1| ggdef domain protein [Pseudomonas aeruginosa PA7]
          Length = 629

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 11/183 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDN 145
           L +   ++   +  D L+GL N    +            + + ++++  D+D+FK IND 
Sbjct: 434 LQMREAQLQYAALHDPLTGLGNRRQLLEFAERALEDARRHGDSMALLLIDLDHFKPINDT 493

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIE 204
            GH  GD V+  ++ +L         V RLGG+EFA    GS+ EQ A  +A  L +  E
Sbjct: 494 HGHDAGDFVLQSVAQRLRQCVRADDCVARLGGDEFAVFIGGSNAEQHAREIAERLLR--E 551

Query: 205 NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            ++    +   + IT S G+A           +   ADQALY  K +GR      +D + 
Sbjct: 552 LAKPVEFAKQWLVITPSIGVALFPGDALQFGKLYKAADQALYRVKGAGRAGYAMAADAQR 611

Query: 264 NTC 266
            T 
Sbjct: 612 ETA 614


>gi|70730694|ref|YP_260435.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens
           Pf-5]
 gi|68344993|gb|AAY92599.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           fluorescens Pf-5]
          Length = 855

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 85/187 (45%), Gaps = 11/187 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           + S + E   +  R+  LS+ D L+GL N +     L        +  E L ++  D+D 
Sbjct: 408 TASDITEEVAARRRVEYLSQHDALTGLANRTRMQEFLEGRLQAPPTLQEPLLMLSVDLDR 467

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK +ND  GH  GD+V+  +S +L     +   V R+GG+EF     G  +  E   L  
Sbjct: 468 FKPVNDLLGHAAGDQVLHEVSQRLAQCLRSEDLVARVGGDEFVLVVTGQVAGHEIEGLCR 527

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
            L + IE  +    +G  + I+ S GIA           ++  AD ALY AK +GR+   
Sbjct: 528 RLIERIE--EPFYIAGHEVFISASIGIARAPGDASQAEELLRFADIALYEAKAAGRSTWR 585

Query: 257 CFSDIEN 263
            ++   N
Sbjct: 586 FYAPYMN 592


>gi|327190644|gb|EGE57732.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 417

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/189 (31%), Positives = 89/189 (47%), Gaps = 12/189 (6%)

Query: 89  ILKELFIS-YNRISQL--SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           IL++L  +  +RI  +  +  D L+  +   AF             +  +LS + FDID+
Sbjct: 154 ILEDLAAAAMDRIDLMQSAATDSLTEAMTRRAFKQEADQLISLALRHQHELSCIVFDIDH 213

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND +GH  GD V+  ++             GR+GGEEFA        Q A  +A  
Sbjct: 214 FKQVNDRYGHAAGDAVLKAVASVCKATLRAGDLFGRIGGEEFAVVLPHVDRQGAFAVAEK 273

Query: 199 LRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L   I    I+   G  +H+T S G  A     + I T++ +AD A+Y AK  GRNR V 
Sbjct: 274 LCAAIAFQPIHGDHGI-LHVTASLGSSALSIVSKDIETLLAQADAAMYQAKHGGRNRCVS 332

Query: 258 FSDIENNTC 266
           +S I  +  
Sbjct: 333 WSSIHADHA 341


>gi|300717186|ref|YP_003741989.1| diguanylate cyclase/phosphodiesterase [Erwinia billingiae Eb661]
 gi|299063022|emb|CAX60142.1| diguanylate cyclase/phosphodiesterase [Erwinia billingiae Eb661]
          Length = 725

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/235 (25%), Positives = 101/235 (42%), Gaps = 21/235 (8%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR 99
            T +      L  I +     +  +++  L L  + ++ S+L          +L  S  +
Sbjct: 247 GTRMLAVIGPLVAIVVLIITAICGVMIRRLWLSSLRLSQSVL----------QLGASEAQ 296

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
              L+  D L+GL N +     L           +K++++  D+D FK IND +GH  GD
Sbjct: 297 AQHLAFHDVLTGLPNRAMVEERLTQALGRLMRNGDKVALLLLDLDRFKLINDTYGHHAGD 356

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKIIENSQINIS 211
            +I  +  ++  + G    VGRLGG+EF     + SS +E   +   +  I+  S+    
Sbjct: 357 DLIIEVGHRVSSLVGEQNTVGRLGGDEFVVILDVVSSPREIQTMCEQI--IVALSRPFTL 414

Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            G    I +S G+A         S ++ +AD ALY AK  GR +   F    + +
Sbjct: 415 LGSDTWIGVSIGVAIAPEDAVDRSEMMRKADIALYEAKSQGRGQYRVFERAMDES 469


>gi|283853938|ref|ZP_06371143.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio sp. FW1012B]
 gi|283570669|gb|EFC18724.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio sp. FW1012B]
          Length = 369

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 78/178 (43%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           +EL     +  QLS  D L+G+ N   F                 LS +  DID FK  N
Sbjct: 188 RELEALTRKFEQLSNQDGLTGVPNRRCFEDVFRKEWLRSRRDGTPLSALMIDIDCFKDYN 247

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD  +  +++ +         FV R GGEEF A   G+    A  +A  +R  
Sbjct: 248 DTYGHLQGDLCLRQVAEAIEAALKRPGDFVARYGGEEFVALLPGTDLAGALSIAGLIRAN 307

Query: 203 IENSQINISSGPSIHI-TISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVC 257
           +  + I  +S     I T+S GI+       I   +++  +D ALY AK  GRNRV  
Sbjct: 308 VRAAAIEHASSRVAEIVTVSIGISGVVPNMDIEAESLLAASDAALYQAKSGGRNRVEV 365


>gi|114799330|ref|YP_761053.1| GGDEF/GAF domain-containing protein [Hyphomonas neptunium ATCC
           15444]
 gi|114739504|gb|ABI77629.1| GGDEF/GAF domain protein [Hyphomonas neptunium ATCC 15444]
          Length = 369

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 9/163 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+  LNH AF             ++  +S++ FDID+FK++ND  GH  GD
Sbjct: 181 LYDLAVTDPLTKALNHRAFFRFAEREVQRAQRHHHPVSVLMFDIDHFKKVNDIHGHAAGD 240

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +VI  LS  +         +GRLGGEEF      +S + A  LAN LR+ +++ +   S 
Sbjct: 241 EVIIRLSRLVTECVREADLLGRLGGEEFGLILPETSLEAAVTLANRLREAVKDLRFKSSE 300

Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           G +  +TIS G+++    E  I   + RAD+ALY AK+ GR+R
Sbjct: 301 G-TFGVTISLGVSQPGDTETDIVPALDRADKALYRAKRFGRDR 342


>gi|71908953|ref|YP_286540.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71848574|gb|AAZ48070.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 655

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFK 140
           S + E      R+  L+R D L+ L N  A  + L +  E       +L+++  D+D FK
Sbjct: 207 SDISESRAQAERLEYLARHDPLTNLPNRLALDAHLDTLLEGATPGINRLALLIIDLDNFK 266

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND+ GH  GD++++ L+ +L         + RLGG+EF         +EA I    ++
Sbjct: 267 TINDSLGHHAGDRLLSELARRLGAQMDLTKRLFRLGGDEFVVVVDQLINEEAVI--ELVQ 324

Query: 201 KIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           ++        +  G  +H T S GI+           +I  AD A+Y AK +GRN    F
Sbjct: 325 QLAGGIGDPCNIDGHVLHCTSSIGISLYPEDGRDAQALIRNADTAMYYAKANGRNNHKFF 384

Query: 259 SDIENNTC 266
           ++  N   
Sbjct: 385 TEPMNAAA 392


>gi|320158210|ref|YP_004190588.1| sensor histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|319933522|gb|ADV88385.1| sensor histidine kinase [Vibrio vulnificus MO6-24/O]
          Length = 387

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 111/242 (45%), Gaps = 15/242 (6%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV--IISITISLLLGYIS 86
           +   +  + F+   +++  +F  Y+       ++++   ++  +  +  I + L LG+  
Sbjct: 152 LAIGLLLAAFVTLALWM--LFRTYVTHMSSQIVDFMFASSIHQLSFLALIMLVLTLGFTF 209

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139
             ++    I+   I Q S  D L+ + N  A                 +LSI+  D+D+F
Sbjct: 210 PWMINARLITN--IYQTSLRDTLTNIYNRRAMEEMIPRELSRASRLGAELSIIILDLDHF 267

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND +GH VGD+ ++ +   L           R+GGEEF      +  + A ++A  L
Sbjct: 268 KRINDQYGHQVGDQTLSGIGQLLTSQLRKQDISFRIGGEEFLVVLPDTPIESAVLVAEKL 327

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           R+ I  ++       +   T S G+A+    +    ++ RAD ALY+AK  GRNRV   S
Sbjct: 328 RQKIAETRFAPKQRETW--TASFGVAQLITGDDWDALMKRADAALYLAKHKGRNRVCEVS 385

Query: 260 DI 261
           D+
Sbjct: 386 DV 387


>gi|294339053|emb|CAZ87402.1| hypothetical protein; putative EAL, GGDEF and membrane domains
           [Thiomonas sp. 3As]
          Length = 801

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 100/208 (48%), Gaps = 13/208 (6%)

Query: 69  LSLVIISITISLLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
           L+++    T+ + +   S +++K    L  ++  + + +  D L+GL N   F+  L   
Sbjct: 167 LTVLAFGATLMMTVEGFSRALIKDNLRLTKAFKALRRFALRDELTGLANRRIFLDHLNEL 226

Query: 126 NEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            ++     L+I   D+D FK +ND  GH +GD+++  +  +L  V      + R GG+EF
Sbjct: 227 MQRHPAQTLTIGLMDLDRFKSVNDRLGHIIGDQLLVAVGQRLRGVLREGDLLARFGGDEF 286

Query: 181 AAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTII 237
                G S+EQ+ + +A  L   IE     I  G S+ I +S G+  +         T++
Sbjct: 287 VVLLPGYSTEQQLSYIAKRLVNCIEA--PFIIQGNSLQIGLSLGLVVQQPDAPVDAETLV 344

Query: 238 YRADQALYVAKKSGRNRVVCFSDIENNT 265
            RAD A+Y AKK+GR +   F     + 
Sbjct: 345 RRADMAMYAAKKNGRQQYRIFDQQMEDA 372


>gi|288940811|ref|YP_003443051.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Allochromatium vinosum DSM
           180]
 gi|288896183|gb|ADC62019.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Allochromatium vinosum DSM 180]
          Length = 1147

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 87/191 (45%), Gaps = 11/191 (5%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFD 135
             ++   +     +   I  L+  D L+GL N   F   LG         +++ ++   D
Sbjct: 696 AVVTFHDISARQRAEAEIQHLAFHDSLTGLPNRLLFKEELGQALAALRRDDQRFALHMLD 755

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAI 194
           +D+FK +ND+ GHPVGD+++  ++++L  +      + R GG+EFA       E  +AA 
Sbjct: 756 LDHFKDVNDSLGHPVGDELLRAVAERLTAITRGTDVLARFGGDEFALLQSKIGEIGDAAA 815

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           LA  + +     Q     G  I I  S GI         +  II RAD ALY AK++GR 
Sbjct: 816 LATKIIEAF--GQAFWIDGNRIDINTSIGILIADQACHDVDDIITRADVALYKAKEAGRG 873

Query: 254 RVVCFSDIENN 264
               F+D    
Sbjct: 874 THAFFADSMTQ 884


>gi|229521205|ref|ZP_04410625.1| sensory box/GGDEF family protein [Vibrio cholerae TM 11079-80]
 gi|229341737|gb|EEO06739.1| sensory box/GGDEF family protein [Vibrio cholerae TM 11079-80]
          Length = 579

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 11/179 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +LS +D L+ + N   F   L           + LSI+  D+DYFK  N
Sbjct: 397 EQLEAANQELERLSFLDSLTHVANRRRFDEQLHTLWHLHVREGKPLSIILCDVDYFKDYN 456

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH +GD+ +  ++     V       V R GGEEF      + +  A ++A  + + 
Sbjct: 457 DAYGHLMGDETLKQIAIAFTQVANRHSDCVARYGGEEFGILLPNTPQAGAILVAERIHEK 516

Query: 203 IENSQINIS-SGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +    I    S  +  IT+S GI       ++    ++  AD+ALY AK +GRN+   +
Sbjct: 517 VRGLAIPHEYSKVADRITVSLGIVTLIPRPEDVPEQMVELADRALYQAKANGRNQTSIY 575


>gi|294339503|emb|CAZ87862.1| conserved hypothetical protein; putative GGDEF domain [Thiomonas
           sp. 3As]
          Length = 368

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 110/256 (42%), Gaps = 29/256 (11%)

Query: 28  MIYFSIFFSIFIATV-----IFIANIFLFYIGLTPFYGLEYILVENL--------SLVII 74
           +++F++  S+ + TV     +      L+ I L   +G   +    L        SL+I+
Sbjct: 100 LMHFNLLPSVVLVTVTTFDKLSSGMRRLWLISLPGLFGAAVLTALILRPPVQLESSLLIV 159

Query: 75  SITISLLLGYI------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125
           + T+ LL+ +       S  +++ +      + QL R D  +GL     +     +    
Sbjct: 160 ACTLPLLVVHTLSSSIGSYRLIRTVSRQNKLLEQLRRTDAQTGLFARDHWQQQADAALQL 219

Query: 126 ----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                +   ++  D+D+FKQ+ND +GH  GD  I  +   +          GR GG+EFA
Sbjct: 220 FQAVGQPACLLMIDVDHFKQVNDTYGHTAGDDAIRAVGQLIRDCICEEDCAGRYGGDEFA 279

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRA 240
                + + +A  +A  +R   E   + +   P++ ++ S G+A        +   +  A
Sbjct: 280 VLCQNTGQPDALGIAERIRT--ELLTLRLPHHPNVRLSSSIGVAAAAPAFSNLQAWMQAA 337

Query: 241 DQALYVAKKSGRNRVV 256
           D ALY AK  GRN+V 
Sbjct: 338 DAALYSAKHQGRNQVA 353


>gi|289166350|ref|YP_003456488.1| regulatory protein (GGDEF and EAL domains) [Legionella longbeachae
           NSW150]
 gi|288859523|emb|CBJ13484.1| putative regulatory protein (GGDEF and EAL domains) [Legionella
           longbeachae NSW150]
          Length = 766

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 11/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + +      ++ Q +  D L+ L N    I  +             L+ +F D+D+FK 
Sbjct: 325 DVTQRREMEQQLIQQATHDSLTELPNRVLLIDRVDQAILQAKKKGSILAFLFLDLDHFKM 384

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
            ND  GH +GD+++  +S++L++       V RLGG+EF        +EQ+A   A ++ 
Sbjct: 385 TNDTLGHSLGDRLLQAVSNRLLIATNDFDTVCRLGGDEFVILLHDIATEQQAEQKAEEIL 444

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           K I N  I I    ++ IT S GI+      +   +++  AD ++Y AK SGRN    + 
Sbjct: 445 KSIAN-PIRI-DQHNLKITGSIGISYYPKDGDDYESLMKNADLSMYHAKDSGRNTYRSYD 502

Query: 260 DIEN 263
              N
Sbjct: 503 KEMN 506


>gi|240140674|ref|YP_002965154.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS/PAC sensor [Methylobacterium extorquens AM1]
 gi|240010651|gb|ACS41877.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS/PAC sensor [Methylobacterium extorquens AM1]
          Length = 700

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/190 (30%), Positives = 91/190 (47%), Gaps = 12/190 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNE-KLSIVFFDID 137
           +   + E   +  RI  ++R D L+ L N +         +++L +  E  L+++  D+D
Sbjct: 247 TFEDITERRRNEARIIHMARHDGLTDLPNRTHLREVGAEWLAALRTAAEAPLAVLCLDLD 306

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND+FGH VGD ++  ++D+L     +   V RLGG+EFA  +       AA LA 
Sbjct: 307 RFKPVNDSFGHAVGDALLRAVADRLRGHVRSHDVVARLGGDEFAVLSRVEDAAAAAALAE 366

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255
            L + +         G ++ I +SAGIA         I  ++  AD ALY AK  GR  V
Sbjct: 367 RLIETVAA--PYTLDGITVEIGMSAGIALAEGDVPHDIERLLKEADLALYEAKTEGRGTV 424

Query: 256 VCFSDIENNT 265
             F    + T
Sbjct: 425 RLFEPQMDET 434


>gi|254786722|ref|YP_003074151.1| GGDEF domain-containing protein [Teredinibacter turnerae T7901]
 gi|237686025|gb|ACR13289.1| GGDEF domain protein [Teredinibacter turnerae T7901]
          Length = 566

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 8/180 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
             + K L  +  ++  ++  D L+ L     F   L             L+++  DID F
Sbjct: 388 SRLNKSLEEASRKLFTIATTDHLTQLATRGYFFQRLNEEINRALNEQSSLALLELDIDNF 447

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND+FGHP GD VI  ++        +   +GR+GGEEFA      ++  A  +AN L
Sbjct: 448 KNINDSFGHPAGDAVIQHMAAICRECVRSNDIIGRIGGEEFAIGLPNCTKSAALEIANTL 507

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           R+   N  +   S  +I  T S G+     ++ I  ++   D+ALY AKK+GRNRV    
Sbjct: 508 RRRCANEGLTYGS-KTIRFTCSIGVTLLNGRDNIQDLLGVVDKALYAAKKAGRNRVHFHE 566


>gi|296128984|ref|YP_003636234.1| diguanylate cyclase/phosphodiesterase [Cellulomonas flavigena DSM
           20109]
 gi|296020799|gb|ADG74035.1| diguanylate cyclase/phosphodiesterase [Cellulomonas flavigena DSM
           20109]
          Length = 811

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 5/178 (2%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--SIVFFDIDYFKQIND 144
            + L+E      R+   +  D L+GL N   F + L         +++  D+D FK +ND
Sbjct: 359 AAALREQRALQERLHHQATHDPLTGLGNRMHFAARLDDAGAATDRALLMLDLDGFKDVND 418

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GHP GD ++  ++D++   V      + RLGG+EFA     +    A   A DL + +
Sbjct: 419 GHGHPAGDHLLQQVADRMRDVVDDEGATLARLGGDEFAVLLDEAPGSRAHDTAWDLVRAL 478

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             S+  +     I +T S G+     ++    ++   D ALY AK +G+N+VV F+  
Sbjct: 479 --SEPFVVEDEVIGVTASVGVRVLGPQDTGEDVLRDVDLALYAAKAAGKNQVVVFTPA 534


>gi|94496229|ref|ZP_01302807.1| sensory box/GGDEF domain protein [Sphingomonas sp. SKA58]
 gi|94424408|gb|EAT09431.1| sensory box/GGDEF domain protein [Sphingomonas sp. SKA58]
          Length = 600

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 13/169 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           +  R   +++ D L+G+ N           I +     + +SI  FDID+FK+IND++GH
Sbjct: 436 AAQRALIMAQTDQLTGIANRRRTEFVLDQAIGAAEQSGKSVSIAIFDIDHFKRINDSYGH 495

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+VI  ++        +   VGR GGEEF      ++++ A  +   +R+ IE +  
Sbjct: 496 HTGDEVIKRVAQDAAAQLRSGDLVGRYGGEEFVIVLPDATQETALRVGERIRETIEAA-- 553

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +SGP   +TIS G+AE    E    ++ RAD+ALY AK++GRNR+  
Sbjct: 554 --NSGP--PVTISIGVAELAQGETADALLRRADRALYSAKRAGRNRLHL 598


>gi|78222512|ref|YP_384259.1| diguanylate cyclase with GAF sensor [Geobacter metallireducens
           GS-15]
 gi|78193767|gb|ABB31534.1| diguanylate cyclase with GAF sensor [Geobacter metallireducens
           GS-15]
          Length = 353

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 9/168 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           + R   ++  D L+GL N   F       ++    Y   LS++  D+D FK+ ND +GHP
Sbjct: 177 HERTRLMAITDALTGLYNRRYFQQMFSRELNRAKRYGNPLSLIMMDVDDFKKFNDTYGHP 236

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GDK++  + D L        F  R GGEEF      +    A  +A  LR+ +E   ++
Sbjct: 237 LGDKLLGSMGDILTEALRNTDFAFRYGGEEFIVLLPETDFSSALNVAERLRESVEQKSVD 296

Query: 210 ISSGPSIH-ITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
              G +++ +T+S G+       E    ++   D+ LY AK+ G+NRV
Sbjct: 297 EMRGIALNAVTVSVGVVSYPQDGETSDDLLNGVDELLYRAKEYGKNRV 344


>gi|119715375|ref|YP_922340.1| diguanylate cyclase [Nocardioides sp. JS614]
 gi|119536036|gb|ABL80653.1| diguanylate cyclase [Nocardioides sp. JS614]
          Length = 721

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 92/197 (46%), Gaps = 11/197 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SY 125
           +SL  ++     L   +S   + +   +   + + +  D L+ L N   F+  L    + 
Sbjct: 515 ISLRPLNSRDGRLGSLVSIYDVTDARHAERALRRRALHDSLTSLPNRYLFLDRLETAAAR 574

Query: 126 NEKL-----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
             +      +++F D+D FKQ+ND FGH  GD V+  ++ +L+        VGRLGG+EF
Sbjct: 575 QRRFEGRGTAVLFLDLDGFKQVNDGFGHEAGDAVLREVAARLLASVRGTDTVGRLGGDEF 634

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
           A     +  +EA ++A  +   + +  I +       I +S G+A          ++ RA
Sbjct: 635 AVICEDTGSEEALVVAQRILDALHD-PIRVGD-HDHPIGLSIGVALAPPY-DFDELVRRA 691

Query: 241 DQALYVAKKSGRNRVVC 257
           D+A+Y AK  G +R+  
Sbjct: 692 DEAMYRAKHVGGSRIAV 708


>gi|68171699|ref|ZP_00545057.1| GGDEF [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657972|ref|YP_507571.1| response regulator PleD [Ehrlichia chaffeensis str. Arkansas]
 gi|67998880|gb|EAM85574.1| GGDEF [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599429|gb|ABD44898.1| putative response regulator/diguanylate cyclase [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 458

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 93/192 (48%), Gaps = 15/192 (7%)

Query: 81  LLGYISGSILKELFISYNRIS-----QLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           L+  ++  + ++ +    RI+      ++  D L+G  N   F              ++ 
Sbjct: 266 LIARVNVQVKRKRYQDALRINVDNSMAMAITDPLTGCYNRRYFDMHFHNIVNESLQKDKN 325

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS++  DID+FK++ND FGH VGD+++     ++         + R GGEEF      ++
Sbjct: 326 LSLMILDIDHFKEVNDTFGHTVGDELLQQFKKRVSDNIRITDLLARFGGEEFVVILPDTT 385

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYV 246
              A  +A  +  +IE +    S G  I+ T+S G+ E    +   I  ++ RAD+ LY 
Sbjct: 386 ITTAEQIATRILSVIEETPFKTSIG-DINKTVSIGVVEVQQSDINNIKQLVDRADKCLYE 444

Query: 247 AKKSGRNRVVCF 258
           AK +GRN+VV +
Sbjct: 445 AKNTGRNKVVTY 456


>gi|330501719|ref|YP_004378588.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas mendocina NK-01]
 gi|328916005|gb|AEB56836.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas mendocina NK-01]
          Length = 537

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 82/179 (45%), Gaps = 8/179 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
           + ++        +      D L+GL NH+  +              + L+    DID+FK
Sbjct: 358 ATVRNRAARARNLKARMVRDSLTGLYNHTHTLQLLDDACYRARREQQPLAFAMLDIDHFK 417

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GHP+GD+VI  L+  L         +GR GGEEFA     + EQ A  +  ++R
Sbjct: 418 KVNDTYGHPMGDRVIKSLALFLKQRLRKTDHIGRYGGEEFAVVLPDTDEQSALKVLEEIR 477

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +         +    +  T S GIA        + +  RAD+ALY AK  GRNRV  +S
Sbjct: 478 QRFAEIHYP-AQPQDLSCTFSCGIAMLQPGLDGNALSKRADEALYKAKHGGRNRVELYS 535


>gi|315125589|ref|YP_004067592.1| sensory box protein [Pseudoalteromonas sp. SM9913]
 gi|315014102|gb|ADT67440.1| sensory box protein [Pseudoalteromonas sp. SM9913]
          Length = 1008

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           + L E   +   I + +  D L+ L N       L        + ++KL I+  DID+FK
Sbjct: 560 TDLTEKKQADELIWRQAHFDHLTDLPNRLELKERLNLRFANLTNADQKLVIMLLDIDHFK 619

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND  GH  GD+++  +S+++V       FV R+GG+EF               +A  L
Sbjct: 620 DINDTLGHHYGDRLLKLVSERIVQTAKEADFVARIGGDEFVVVFSDLHGSDNIKQMAKSL 679

Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              + ++         ++I+ S GIA      +    ++  ADQA+Y AK SGRN    F
Sbjct: 680 LLSLASTIF--IEDEKVYISASIGIACAPDDGQNPEQLLKAADQAMYKAKNSGRNGFEFF 737

Query: 259 SDIENNTC 266
           S       
Sbjct: 738 SHDMREDA 745


>gi|295691059|ref|YP_003594752.1| diguanylate cyclase/phosphodiesterase [Caulobacter segnis ATCC
           21756]
 gi|295432962|gb|ADG12134.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Caulobacter segnis ATCC 21756]
          Length = 691

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 82/184 (44%), Gaps = 11/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + +       I  L+  D L+GL N + F               E   ++  D+D+FK 
Sbjct: 252 DITDRRRQTEAIETLAFKDPLTGLPNRALFQHRFNEAVSASETLGEMFGLIMIDVDHFKD 311

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH  GD ++  L+  L   F +   V RLGG+EFA    G   +  A +   ++K
Sbjct: 312 INDTLGHDAGDVLLKRLAGMLRRAFRSGDTVARLGGDEFAVILRG--LRGEADMMRPIQK 369

Query: 202 IIENSQINIS-SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           + E  Q  I  +G S   T S G A     E   + +I  AD ALY AK++GRNR + F 
Sbjct: 370 LQELLQRPIEYAGRSFTATASIGAALHGDPEADPAHMIKNADIALYHAKEAGRNRSIVFE 429

Query: 260 DIEN 263
               
Sbjct: 430 PAMR 433


>gi|182701591|ref|ZP_02612364.2| putative diguanylate cyclase [Clostridium botulinum NCTC 2916]
 gi|182670760|gb|EDT82734.1| putative diguanylate cyclase [Clostridium botulinum NCTC 2916]
          Length = 843

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 10/214 (4%)

Query: 61  LEYILVENLSLVIISITISLLLGYISG--SILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           LE I +E L     ++  S+ + Y +   + + E      +I  L+  D L+GL N    
Sbjct: 378 LEEIYIEELRKWFSAVVYSMEVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKI 437

Query: 119 ISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           I ++        NEK +++F D+D+FK IND  GH VGD V+  +S +  ++      +G
Sbjct: 438 IETINKTINSYENEKFAVLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKHKIG 497

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           RLGG+EF      +S  +A  LA  +   + N  I       + I  S GI+      + 
Sbjct: 498 RLGGDEFIIVQNITSISDAEKLACKICTTL-NHSIKYKED-DLFIGASIGISIYPEDGKD 555

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            ST++  AD A+Y AKK+G  +   +S   N   
Sbjct: 556 TSTLMKNADAAMYAAKKNGGYKYEVYSRSMNERA 589


>gi|88607360|ref|YP_505143.1| response regulator PleD [Anaplasma phagocytophilum HZ]
 gi|88598423|gb|ABD43893.1| Response regulator/GGDEF domain protein PleD [Anaplasma
           phagocytophilum HZ]
          Length = 456

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 9/163 (5%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +++S  D L+G  N   F              ++ LS++  DID+FKQ+ND+ GH VGD+
Sbjct: 292 AEMSIRDSLTGCYNRRYFEMHFQNILNESQEKDKPLSVMLLDIDHFKQVNDSLGHQVGDE 351

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  +  ++         + R GGEEF      +  +EA ++A+ LR+II  S    S+G
Sbjct: 352 ILQQICKRIFNSIRISDLLARYGGEEFVIIMPETCIEEATLVADRLRRIIAESPFTTSAG 411

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           P ++ T+S G A     E    ++ RAD+ LYVAKK+ RN VV
Sbjct: 412 P-LNKTLSIGAANLRSGETAEQLLTRADKLLYVAKKT-RNSVV 452


>gi|213585868|ref|ZP_03367694.1| hypothetical protein SentesTyph_33212 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 182

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 10/170 (5%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
              +  D L+ L N  A                +  S++  D+DYFK +ND FGH  GD+
Sbjct: 7   QWQAWHDPLTRLYNRGALFEKASRLAKRYREARQPFSVIQLDLDYFKSVNDRFGHQAGDR 66

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V++  +  +          GR+GGEEF     G+++ +A  +A  +R+ I + +I ++  
Sbjct: 67  VLSHAAGLIGSTIRAHDIAGRVGGEEFCIVLPGATKAQALQIAERIRQRINDKEILVTKS 126

Query: 214 PSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            ++ I+ S GI  AE         +   AD+ LY AK+SGRNR+ C SD 
Sbjct: 127 TTLRISASMGISSAEEYGDYDFEQLQSLADKRLYYAKQSGRNRI-CASDA 175


>gi|39996139|ref|NP_952090.1| sensory box/response regulator [Geobacter sulfurreducens PCA]
 gi|39982904|gb|AAR34363.1| sensory box/response regulator [Geobacter sulfurreducens PCA]
          Length = 799

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/214 (24%), Positives = 89/214 (41%), Gaps = 23/214 (10%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSY 125
           I++     +L  +    + E   S   I  L+  D L+GL N   F       +S     
Sbjct: 319 IVANGTGTVLAIV--RDVTERRQSEEMIRYLAHHDSLTGLPNRIFFGEMLELVLSRARRD 376

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV------------G 173
            ++++I+F D+D FK IND  GH  GD ++   + +L     +  +V             
Sbjct: 377 GKQVAILFVDLDDFKLINDTLGHAAGDHLLREAAQRLKGCVRSSDYVASGAESGLCGNIA 436

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EP 232
           R GG+EF  +       +  ++A   R I E S+     G  I +++S GI+      E 
Sbjct: 437 RFGGDEFILSLGNLDSVD-DVVAVTQRIISEFSREFRIDGHEIFVSVSIGISMYPDDAED 495

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             +++  AD A++ AK+ G      F+   N   
Sbjct: 496 TGSLVRNADMAMFAAKEEGGPSFRFFTRGMNEAA 529


>gi|42522950|ref|NP_968330.1| GGDEF domain-containing protein [Bdellovibrio bacteriovorus HD100]
 gi|39574146|emb|CAE79323.1| GGDEF domain protein [Bdellovibrio bacteriovorus HD100]
          Length = 408

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 13/178 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFK 140
           ++ K+L  +   + +    D L+G  N  ++   +  Y +        ++++  DID+FK
Sbjct: 226 TVKKQLMEANTTMRK----DHLTGAHNRRSYDEQIRRYLQLHEIDKDPMTLIIMDIDFFK 281

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           +IND++GH +GD V+      +   F     F+ RLGGEEFA    G   Q A  +A + 
Sbjct: 282 KINDSYGHDIGDFVLQECVRLIQESFSREEDFIARLGGEEFAVILPGCDAQAAVRMAEEA 341

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              I   ++ +     I  T+S GIAE    E    +  RAD+ALY +K++GRN+   
Sbjct: 342 MNRIRK-EVFVHEKFEIRFTVSLGIAEVMPGEKADALYKRADEALYESKQTGRNKYTV 398


>gi|16801341|ref|NP_471609.1| hypothetical protein lin2277 [Listeria innocua Clip11262]
 gi|16414789|emb|CAC97505.1| lin2277 [Listeria innocua Clip11262]
          Length = 357

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 73/254 (28%), Positives = 114/254 (44%), Gaps = 18/254 (7%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           I     K LE ++       + +F    IA    + N+ L  +   P + +      +++
Sbjct: 115 ITALFSKRLEKYN------IWGVFILNIIACGFVVINLHLI-LAKEPDFWVNMFTFVSIA 167

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYN 126
           LVI +++  L+   I     K+LF  Y    Q S +D L+ L N   F       + + +
Sbjct: 168 LVIGAVSAGLMKNMIKS---KQLFQKY---EQDSTLDYLTRLSNVRQFDEKINHVMDAGS 221

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
            +++++  DIDYFK IND +GH  GD ++  L+  L           R GGEEF+   L 
Sbjct: 222 RQVTLMLIDIDYFKNINDTYGHDAGDAILKQLAIILKRNTSDGSEAFRNGGEEFSIVLLD 281

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALY 245
              ++    A  +RK  E     I SG  + ITIS G++        S  +   AD+ALY
Sbjct: 282 CPIEKGNFFAEQVRKETEEHDFMIPSGKLVKITISVGVSSSKDGANTSEGLFKSADEALY 341

Query: 246 VAKKSGRNRVVCFS 259
            AK +GRNRV    
Sbjct: 342 KAKLTGRNRVCIAD 355


>gi|260770222|ref|ZP_05879155.1| hypothetical protein VFA_003289 [Vibrio furnissii CIP 102972]
 gi|260615560|gb|EEX40746.1| hypothetical protein VFA_003289 [Vibrio furnissii CIP 102972]
          Length = 993

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 95/209 (45%), Gaps = 8/209 (3%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
            YI V+    VI +     +    S + + E   S ++I Q++  D L+G+ N    +  
Sbjct: 522 HYIWVQLSGAVIHNTQGRPIRLVGSMTDITEQQESADKIHQMAYYDGLTGVANRRKLMEV 581

Query: 122 LGSYNEKL-----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
           +  + +       +++  D++ FK IND FGH VGD ++  +++ L         +GR G
Sbjct: 582 IEHHIQHHPNSTKAVMMMDLNRFKIINDTFGHQVGDALLCHVAEALQQTLRAEDIIGRFG 641

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPIST 235
           G+EF       ++ +A  LAN L + ++   +   +   +    S G+A    H      
Sbjct: 642 GDEFVFFCDVQNDYQAHELANRLLRAVKR-PMQYDNMELVG-EASIGVAFYPQHGVDGDE 699

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +I  AD A+Y AK+ G   VV F+   + 
Sbjct: 700 LIKNADVAMYRAKQLGGGEVVLFNSNMHE 728


>gi|254496498|ref|ZP_05109372.1| hypothetical protein LDG_1047 [Legionella drancourtii LLAP12]
 gi|254354281|gb|EET12942.1| hypothetical protein LDG_1047 [Legionella drancourtii LLAP12]
          Length = 505

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 11/183 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           S   + +  I   ++   +  D L+GL N    +  LG         N   +++FFD+D 
Sbjct: 60  SFRDITQRVILEKQLKYQATHDSLTGLPNRVLMLDRLGHVLDKAKRQNTLFAVIFFDLDR 119

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAN 197
           FK IND+ GH  GD+++  ++ +L  +      + RLGG+EF        +E +A  +A 
Sbjct: 120 FKLINDSIGHDTGDELLKTVAKRLEFMLRGTDTLARLGGDEFIVIVDNIKNEFDAGTVAT 179

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            L +   NS   I +G S+ +  SAGI+      + I  ++  AD A+Y AK SG N+  
Sbjct: 180 HLLESF-NSNFEI-AGQSLSVCSSAGISIFPRDGKTIGELLRNADAAMYQAKNSGGNQFQ 237

Query: 257 CFS 259
            ++
Sbjct: 238 FYT 240


>gi|289207706|ref|YP_003459772.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Thioalkalivibrio sp. K90mix]
 gi|288943337|gb|ADC71036.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Thioalkalivibrio sp. K90mix]
          Length = 685

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 85/212 (40%), Gaps = 39/212 (18%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQIN 143
           E      R+   +  D L+GL N   F   L     +         +++F D+D FK +N
Sbjct: 213 ERNRHAERLIHHASHDPLTGLPNRRLFHDRLEHAIARYAREPESLFAVLFVDLDRFKLVN 272

Query: 144 DNFGHPVGDKVIAFLSDQLV---------------VVFGTPMFVGRLGGEEFAAAALGSS 188
           D+ GH  GD+++A +  +L+                       + RLGG+EF     G  
Sbjct: 273 DSLGHTAGDELLAQVGKRLLTALRQNDTVSRPGGNQNTRPDDTLARLGGDEFTILLEGLH 332

Query: 189 EQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-------------IS 234
           E  +A  +A  L+ I+   Q    +G ++++T+S GIA R + +                
Sbjct: 333 EPVDALRVAERLQAIL--HQPFSIAGQTVYVTVSIGIATRPYGQACPVVSPDQDGPTCAE 390

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            ++  AD A+Y AK  G+ R         +  
Sbjct: 391 DLMREADMAMYRAKSLGKARCEFCDPGMQSQA 422


>gi|126668290|ref|ZP_01739249.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter sp. ELB17]
 gi|126627207|gb|EAZ97845.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter sp. ELB17]
          Length = 803

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 11/190 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
            I G  +        ++ + +  D L+GL N    +  L          + ++ ++F D+
Sbjct: 355 LILGEDISIRKRYERQLLRQANYDILTGLPNRMLALDRLKLALAQARRESTEVGVMFLDL 414

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FK +ND  GH  GD ++   + ++         V RLGG+EF     G  S + ++ +
Sbjct: 415 DNFKHVNDTLGHDAGDTLLIEAARRISSCLRGSSTVARLGGDEFLVILPGLQSAEVSSQV 474

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNR 254
           A  + K    S     +   +++T S GIA        S  ++  AD A+Y AK+ G++ 
Sbjct: 475 AERILKTF--SMPYQLNSHEVYVTTSIGIAAFPADSDNSGELMQHADAAMYQAKRKGKSD 532

Query: 255 VVCFSDIENN 264
            V FS   + 
Sbjct: 533 YVHFSPEMSE 542


>gi|120402915|ref|YP_952744.1| diguanylate cyclase/phosphodiesterase [Mycobacterium vanbaalenii
           PYR-1]
 gi|119955733|gb|ABM12738.1| diguanylate cyclase/phosphodiesterase [Mycobacterium vanbaalenii
           PYR-1]
          Length = 769

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 106/227 (46%), Gaps = 17/227 (7%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISL--------LLGYISGSILKELFISYNR- 99
           +L ++G+   +G   ++   L+  ++S+T+++        +L   + S+L +      R 
Sbjct: 275 YLGFLGIAVMFGFHVLIGRQLNPFVVSLTVAMVALVTVRQILATRAQSLLTQRLYWAQRG 334

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           ++     D L+GL N   F   L     + +  ++F D+D FK++ND FGH  GD+++  
Sbjct: 335 LAYQVHHDALTGLPNRILFARRLDEAMAHGRFVLIFVDLDDFKEVNDRFGHAAGDELLRA 394

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           + ++L         + R+GG+EFA   +  +EQ   ++A  LR  I         G S+ 
Sbjct: 395 VGERLKRCVTAADTLARIGGDEFAVLIVAEAEQ-LEVVAERLR--IALRDPFPVHGSSVR 451

Query: 218 ITISAGIAERCHK---EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +  S G+         +    ++ +AD ++Y  K+ G++  V +   
Sbjct: 452 VKASMGLVRPEGDGMPQTSDDLLRQADISMYAGKRMGKDTAVVYQPA 498


>gi|91775551|ref|YP_545307.1| diguanylate cyclase [Methylobacillus flagellatus KT]
 gi|91709538|gb|ABE49466.1| diguanylate cyclase (GGDEF domain) [Methylobacillus flagellatus KT]
          Length = 394

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 14/175 (8%)

Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
             L+  D L+ + N  A        I     Y   +SI   D+D+FK IND +GH  GDK
Sbjct: 221 EHLATHDELTKIYNRRALVNLGRREIDLAHRYKRPISIFMIDLDHFKLINDTYGHDAGDK 280

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  ++  L         +GR GGEE       ++++EA  L   L + + N +      
Sbjct: 281 VLRSVALTLSNTCRNTDIIGRYGGEELCIVCPHTTKEEATALGERLLEALRNLRHPACDN 340

Query: 214 PSIHITISAGIAERCHKEPI----STIIYRADQALYVAKKSGRNRVVCFSDIENN 264
              H+T S G+        +      +++RAD ALY AK +GRN ++ ++ +E++
Sbjct: 341 R--HVTCSIGLYTWNPHIDLAANWEAMLHRADTALYAAKAAGRNCMLQYN-LEDD 392


>gi|71734073|ref|YP_272405.1| sensory box protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71554626|gb|AAZ33837.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 316

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
              + +     + + +L+  D L+   N   F                 L+ +  DID F
Sbjct: 138 AEDITDKKHLEDELQRLATTDVLTQSSNRRHFFECAQREFELARLNGTPLAFLLLDIDDF 197

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND +GH  GD V+  +++            GR+GGEEFAA   G +   A  +A  L
Sbjct: 198 KLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCAPDMAMQIAERL 257

Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++ I+      S G +  IT S G+         + T+  RAD A+Y AK+ G+N++V 
Sbjct: 258 QREIQRQNFQ-SGGTTFSITASQGLTNLGPEDSSLETLYGRADAAMYQAKRQGKNQIVL 315


>gi|113477644|ref|YP_723705.1| response regulator receiver modulated diguanylate cyclase
           [Trichodesmium erythraeum IMS101]
 gi|110168692|gb|ABG53232.1| response regulator receiver modulated diguanylate cyclase
           [Trichodesmium erythraeum IMS101]
          Length = 357

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 14/179 (7%)

Query: 92  ELFISYNRISQL---SRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQ 141
           EL     ++  L   S  D L+G+ N   + + L           + +S++  DID+FK 
Sbjct: 172 ELKKQNEQLEHLLKISNTDPLTGIPNRYCWETVLQQDWKKSIYDAQPISLIMIDIDFFKL 231

Query: 142 INDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND +GHP GD  +  ++ ++   +  T     R GGEEF      + +  A  +A  +R
Sbjct: 232 FNDAYGHPEGDICLRKVAQEIKKPLTRTTDLAARYGGEEFVVVLPNTGKHRAMFIAESIR 291

Query: 201 KIIENSQI-NISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVV 256
             + + +I N  S    +ITIS G+A      K  +  +I +AD+ALY AKK+GRN V 
Sbjct: 292 MQVNSLKIVNEDSKVDKYITISLGVATTIPTIKSHLDELISQADKALYFAKKNGRNCVR 350


>gi|330971017|gb|EGH71083.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 763

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 10/183 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSY---NEKLSIVFFDIDYF 139
            ++L +L  +   + Q++  D L+ L+N   F       L  +   N  L+++F DID+F
Sbjct: 273 NALLTQLDQARVSLQQVAHYDPLTNLINRRGFNQIFAEKLQEHTYNNGMLAVMFLDIDHF 332

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND+ GH  GD+++  ++D++         V R GG+EF         +EA  LA+ +
Sbjct: 333 KRINDSLGHDAGDELLKVIADRIRGATRVQDVVARFGGDEFCILLSIPDYEEARHLAHRV 392

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + ++ +     +G  + +T S GIA           ++  AD ALY +K  GRN V  F
Sbjct: 393 MQKMKETI--ALAGRRMVMTTSIGIAVFPRDGSTCDELLKHADLALYQSKDKGRNGVNFF 450

Query: 259 SDI 261
           +  
Sbjct: 451 NPA 453


>gi|315123012|ref|YP_004065018.1| GGDEF family protein [Pseudoalteromonas sp. SM9913]
 gi|315016772|gb|ADT70109.1| GGDEF family protein [Pseudoalteromonas sp. SM9913]
          Length = 506

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 8/165 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++ Q +  D L+G  N       +  L       +++  DID+FK++ND FGH VGD+V+
Sbjct: 344 QLRQDALTDPLTGAHNRRGLYLLLDKLIQEQIPFAVLEIDIDFFKRVNDTFGHDVGDEVL 403

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L+  +  V      V R GGEEF       +   A ++A  LR  + N+ +       
Sbjct: 404 KTLTCVIKQVSRKDDIVARTGGEEFLLILPNENSDSAFVIAERLRNEVANTPMAKVG--- 460

Query: 216 IHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I +S GIA    H + I  +   AD+ALY AK++GRN+ V  S
Sbjct: 461 -CINVSIGIATWPQHSDDIDQVYKCADKALYHAKETGRNKTVIAS 504


>gi|239997018|ref|ZP_04717542.1| putative diguanylate cyclase/phosphodiesterase domain 2 (EAL)
           [Alteromonas macleodii ATCC 27126]
          Length = 488

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 81/180 (45%), Gaps = 11/180 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            L E       + +++  D L+ L N           I          ++ F D+D FK+
Sbjct: 109 DLSEQHNIRQELERMASTDLLTELPNRRLLEQFLTSSIEDASRNESGFALFFIDLDMFKE 168

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           +ND  GH  GD+++  +S +L         + R GG+EF   A   +SE E+A +A  L 
Sbjct: 169 VNDTLGHTWGDELLRSVSKRLSDCLSEQGLLARFGGDEFVFVATQVTSENESADIAKKLT 228

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  + S     S  ++HIT S GI+        I  ++  AD A+Y AK  GRNR   F+
Sbjct: 229 ECFKQS--FALSTENVHITSSIGISMFPKDGSEIDDLLKNADVAMYQAKAEGRNRFHFFT 286


>gi|239820749|ref|YP_002947934.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Variovorax paradoxus S110]
 gi|239805602|gb|ACS22668.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Variovorax paradoxus S110]
          Length = 755

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 11/182 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQ 141
            + E   +  ++++L+R D L+GL N +  +  L   +          ++   D+D+FK 
Sbjct: 296 DVTERKAAEEQLAKLARTDGLTGLANRATLVERLHQAHAAARRGSVPFALHCLDLDHFKP 355

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           +ND FGHP GD ++  ++ +L         V RLGG+EFA      +    A  LA  ++
Sbjct: 356 VNDMFGHPGGDLLLREVALRLKNCTRETDVVARLGGDEFAVLQSEMADAAAAGALAAKIQ 415

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  E ++  +  G  +H + S GI       E    ++ +AD ALY +K+ GRN+    S
Sbjct: 416 Q--ELARPYMIDGNQVHASASIGICPYTPGSESPEEMLAQADLALYRSKEQGRNQYHFHS 473

Query: 260 DI 261
           + 
Sbjct: 474 EE 475


>gi|119900098|ref|YP_935311.1| hypothetical protein azo3809 [Azoarcus sp. BH72]
 gi|119672511|emb|CAL96425.1| conserved hypothetical membrane protein [Azoarcus sp. BH72]
          Length = 503

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 98/237 (41%), Gaps = 21/237 (8%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI 85
           T +  +     +F+  +    N+ L  IGL   Y    +     +L  ++ T        
Sbjct: 269 TLLASWHANLPVFL-VIALGGNVALMVIGL---YAYRQVTRRRQALDELAAT-------- 316

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDY 138
           +  +   +      + +L+  D L+G  N  AF+            ++  L+++  D+D 
Sbjct: 317 NRELEDRVRERTRELHRLAHTDVLTGARNRRAFMDEGEALFALAHRHHRDLAVMVLDVDR 376

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND +GH  GD V+  L+     V  T     R GGEEFA     +    A  +   
Sbjct: 377 FKSINDRYGHAGGDAVLRALATVPDSVLRTSDLFARFGGEEFAIVLPETDCMGAMEVGQR 436

Query: 199 LRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNR 254
           L       ++    G  +  T+S G++        +  ++ RAD ALY AK+SGR+R
Sbjct: 437 LLAAFRECEVPH-DGQVLRFTVSIGLSVIGPADASLEALLQRADLALYRAKESGRDR 492


>gi|39996968|ref|NP_952919.1| GGDEF domain-containing protein [Geobacter sulfurreducens PCA]
 gi|39983856|gb|AAR35246.1| GGDEF domain protein [Geobacter sulfurreducens PCA]
          Length = 342

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/188 (30%), Positives = 94/188 (50%), Gaps = 11/188 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129
            +S+L  + + +I      +  R+  ++  D L+GL NH  F       ++    Y + L
Sbjct: 149 LLSVLASFAAMAIDNAQLHARTRL--MAITDSLTGLYNHRYFQQIFSRELNRAKRYEKPL 206

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +I+  D+D FK+ ND +GHP GDKV+A + D L     +  F  R GGEEF      +  
Sbjct: 207 AIIMLDVDDFKRFNDTYGHPHGDKVLAAMGDFLGEALRSSDFAFRYGGEEFIVLLPETEF 266

Query: 190 QEAAILANDLRKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVA 247
             A  +A  LR+++E   +++  G     +T+S G+A      E    ++ R D  LY A
Sbjct: 267 DSALQVAERLRELVERRSLDVLKGLAPQGVTVSVGVASFPRDGESRGDMLKRVDDLLYRA 326

Query: 248 KKSGRNRV 255
           K+ G+NRV
Sbjct: 327 KEFGKNRV 334


>gi|303239391|ref|ZP_07325919.1| diguanylate cyclase with TPR repeats [Acetivibrio cellulolyticus CD2]
 gi|302593177|gb|EFL62897.1| diguanylate cyclase with TPR repeats [Acetivibrio cellulolyticus CD2]
          Length = 1820

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 88/180 (48%), Gaps = 11/180 (6%)

Query: 93   LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDN 145
            L +    +  +S ID L+G+     F S +             LS++  DID FK INDN
Sbjct: 1466 LHMENYALKIISSIDKLTGVYTRKYFESVIDQIINNAHSEKSPLSLIMIDIDKFKSINDN 1525

Query: 146  FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            FGH  GD++++ +   L+    +     R GGEEF      +S  EA  +A  LR  IE 
Sbjct: 1526 FGHQKGDEILSNVGRILMENIRSADVCCRYGGEEFVIILPDTSINEAEAVAEKLRSAIEK 1585

Query: 206  SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             ++    G   ++T+S G++    H E    +I +ADQALY AK+SGRNR   ++     
Sbjct: 1586 ERLM---GQGNNLTVSLGVSSYPKHGEWRDELIGKADQALYYAKESGRNRSCVWNTRMRK 1642


>gi|284989794|ref|YP_003408348.1| diguanylate cyclase/phosphodiesterase [Geodermatophilus obscurus
           DSM 43160]
 gi|284063039|gb|ADB73977.1| diguanylate cyclase/phosphodiesterase [Geodermatophilus obscurus
           DSM 43160]
          Length = 613

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 11/184 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNE-KLSIVFFDIDYF 139
           ++ + +     +       +R D L+ L N +       + L   +   +S++F DID F
Sbjct: 160 VTHTDVTSRVAAERASDWRARHDTLTELPNRAHLHELIDTELQRQDRGPVSVLFLDIDGF 219

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND+ GH VGD ++  ++ +L         VGRLGG+EF           A  LA+  
Sbjct: 220 KDVNDSLGHDVGDDLLRQVAARLTGSTRAGDTVGRLGGDEFVVLCRDCDTTGAEALADRC 279

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPI----STIIYRADQALYVAKKSGRNRV 255
           R  I+  +     G  + +  S GIA      P     + ++  AD A+Y AK +GRNRV
Sbjct: 280 RAGID--RPFELGGRLVRLGASIGIATAAASGPTRVRSTDLVRDADLAMYAAKAAGRNRV 337

Query: 256 VCFS 259
             F+
Sbjct: 338 RLFT 341


>gi|121594336|ref|YP_986232.1| diguanylate cyclase [Acidovorax sp. JS42]
 gi|120606416|gb|ABM42156.1| diguanylate cyclase [Acidovorax sp. JS42]
          Length = 334

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 84/185 (45%), Gaps = 17/185 (9%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKLS-----------IVFFDIDYFKQ 141
           + +Y  +   S  D L+GLLN   F            S           +   DID+FK 
Sbjct: 142 YQNYQSLLDYSERDALTGLLNRKTFEEQFSRQTGAPASPGEGEDTVRQWLAVIDIDHFKS 201

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND FGH  GD+V+  ++++L   F +   + R GGEEF       +  +A      LR 
Sbjct: 202 VNDRFGHLYGDEVLILVANRLRTQFQSQDSIFRFGGEEFVVLLRSLTLAQARQALERLRA 261

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            ++            HIT+S G A      P+  I+ RADQALY AK+ GRN+V  + D+
Sbjct: 262 AVQTHVFPQIG----HITVSIGFAATQQGSPVE-ILGRADQALYYAKEHGRNQVCFYEDL 316

Query: 262 ENNTC 266
            NN  
Sbjct: 317 VNNGA 321


>gi|146308214|ref|YP_001188679.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
 gi|145576415|gb|ABP85947.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
          Length = 726

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/264 (25%), Positives = 118/264 (44%), Gaps = 32/264 (12%)

Query: 25  HTFMIYFSIFFSIFIATVIF--IANIFLFYIGLTPFYGLEYILVENLSLVIISITI---- 78
           H   +  ++     IA++ +  +A++ L     TP           L L++ SIT+    
Sbjct: 191 HWLRLCAALVMGAAIASMHYTGMASLNLVVPEGTPLQLRSADNAGQLVLIVASITLLILG 250

Query: 79  -SLLLGYI-------------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFI----S 120
            SL   ++               ++L +L  +   + Q++  D L+ LLN   F     +
Sbjct: 251 LSLAAAWVGRKLDDKERDLQRVNNLLMQLDQAKASLEQVAHFDPLTELLNRRGFNRVFAA 310

Query: 121 SLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
           +L  +      L+++F D+D+FK++ND  GH  GD+++  ++ ++         + R GG
Sbjct: 311 TLEEHAITGRSLAVMFLDVDHFKRVNDTLGHDAGDELLRVVAQRIRGSLRERDIIARFGG 370

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERC-HKEPIST 235
           +EF   A   S     +LA  +   +E  +  IS +G  I +T S GI+           
Sbjct: 371 DEFCVVASLDSNAAPRVLAQRI---LEQMKEPISLTGRRIVMTTSVGISLFPQDGNSAEE 427

Query: 236 IIYRADQALYVAKKSGRNRVVCFS 259
           ++  AD ALY +K SGRN V  F+
Sbjct: 428 LLKHADLALYQSKGSGRNVVHFFN 451


>gi|319957354|ref|YP_004168617.1| response regulator receiver modulated diguanylate cyclase
           [Nitratifractor salsuginis DSM 16511]
 gi|319419758|gb|ADV46868.1| response regulator receiver modulated diguanylate cyclase
           [Nitratifractor salsuginis DSM 16511]
          Length = 430

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/181 (34%), Positives = 92/181 (50%), Gaps = 15/181 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDID 137
           ++ S + EL  S +   + ++ D L+GL N  AF     S        N +LS++  D+D
Sbjct: 246 VALSEITELISSRDFYRKQAKRDELTGLNNRFAFNRKFESLIPKALSENGQLSMILIDLD 305

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK IND +GH  GDKV+  ++  L    G   F+ R GGEEF       S  EA  LA 
Sbjct: 306 HFKAINDRYGHDFGDKVLTDVARVLEQCIGPKDFLARWGGEEF-VVLSQRSLDEAIELAE 364

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNR 254
           ++R+ I   +I   +G  +H   S G++    +E       +  RAD+ALY AK  GRNR
Sbjct: 365 EIRRKI--MEIKYENGVQLH--CSCGVSTLNPEEDARDAHKMFRRADKALYQAKNLGRNR 420

Query: 255 V 255
           V
Sbjct: 421 V 421


>gi|307824284|ref|ZP_07654510.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
 gi|307734664|gb|EFO05515.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
          Length = 295

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 68/268 (25%), Positives = 122/268 (45%), Gaps = 22/268 (8%)

Query: 2   TRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL 61
           T    + ++I+      +    PH+  IY +  F++ + + +F  +   + + +      
Sbjct: 36  TLEFNELIAIFS---SKIAHKIPHSAFIYTNTEFALEVKSGVFTRHSCNYALKVEQQQLG 92

Query: 62  EYILVENLS-----LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           E  L+ N       L ++   +  L+  +  + L      +++  +++  D L+   N +
Sbjct: 93  ELKLMRNHRFSDGDLQLLETLLCCLIYPLKNATL------FHQALKMAYTDPLTQTHNRA 146

Query: 117 AFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
           +F  ++           + LS++FFDID+FK IND +GH  GD  +A  +  +       
Sbjct: 147 SFNDTIKREMSLATRNVKNLSLIFFDIDHFKTINDTYGHDCGDITLALGAKWIKESLRDS 206

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
             + R GGEEF      +    A +LA  +R  IEN  I      +I IT S G++    
Sbjct: 207 DIIFRYGGEEFVILLSDTDANGAGLLAERIRTSIENHTIAYGM-ETIKITASLGVSTLRA 265

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVC 257
            + I + I RAD+A+Y AK  GRN+VV 
Sbjct: 266 NDTIESFILRADKAMYAAKNKGRNQVVL 293


>gi|296390801|ref|ZP_06880276.1| hypothetical protein PaerPAb_21718 [Pseudomonas aeruginosa PAb1]
          Length = 651

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 10/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
             + +      ++ +++  D L+GL N  AF   LG           +L++++ D+D FK
Sbjct: 471 RDVSDQIAYQQQLLEMAYRDPLTGLGNRKAFDEQLGQALLRAGSGGSELALLYLDLDRFK 530

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND FGH VGD ++  +++++      P    RLGG+EFA     S E     LA  L 
Sbjct: 531 EVNDRFGHDVGDALLRTVAERVRSTLRQPDKAYRLGGDEFAVLLEDSQENNPQRLAERLL 590

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +    I ++      +T S GIA    H      ++  AD A+Y AK+  RN    +
Sbjct: 591 AAL-VQPIALNGERIDFVTPSIGIALYPRHAGDAEGLVRAADSAMYEAKRQ-RNHYCLY 647


>gi|288942102|ref|YP_003444342.1| response regulator receiver modulated diguanylate cyclase
           [Allochromatium vinosum DSM 180]
 gi|288897474|gb|ADC63310.1| response regulator receiver modulated diguanylate cyclase
           [Allochromatium vinosum DSM 180]
          Length = 304

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 10/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L    + +  L+ +D L+ + N   F  +L             L++   D+DYFK  ND+
Sbjct: 130 LKRKTDLLDSLASLDGLTHIPNRRRFDEALKQEWARAAREGAPLALAMLDVDYFKSYNDH 189

Query: 146 FGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD+ +  ++D L   +      V R GGEEF      +    A  LA   R  + 
Sbjct: 190 YGHGRGDECLRRVADALRARLQRPADLVARYGGEEFVLLLPDTDAAGALALAESCRVGVS 249

Query: 205 NSQINIS-SGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVC 257
              I  + S  + H+T+S G+A        S  ++ RAD+ALY AK  GRNRV  
Sbjct: 250 ALHIPHAYSAAADHVTLSIGVAATQPPSDGSGLLLARADEALYRAKSEGRNRVCV 304


>gi|319427137|gb|ADV55211.1| diguanylate cyclase [Shewanella putrefaciens 200]
          Length = 578

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 26/244 (10%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENL-----SLVIIS---------ITISLL 81
           + F+  +     ++ F+I LT ++ ++  +++ +     ++  I+         IT +L 
Sbjct: 324 TAFVLLIFCGGVLYCFFIWLTSWHFIDKGIIKPVIATRDAMDAIANEKLDTPMPITDNLE 383

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFF 134
           L  +  S+   L     ++  ++  D L+G  N     + +         +   LSIV F
Sbjct: 384 LQQMVNSLAT-LKTYAAQVKAMAETDGLTGCYNRRYLDNQIEKELLYANDHQVPLSIVMF 442

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           DID FKQ ND +GH +GD+ +  + +    +       + R GGEEF         ++A 
Sbjct: 443 DIDNFKQFNDRYGHVIGDQCLKQIVNAAKSILQRPTDTLARYGGEEFMILLPSRHLEDAY 502

Query: 194 ILANDLRKIIENSQINISSGPSIHI-TISAGIAERCHKEPIST--IIYRADQALYVAKKS 250
            +A  LR+ I + +I     P   I TISAGI      E + T  +I RAD+ALY AK +
Sbjct: 503 KIAEHLRETIIDLKIPHEDSPHAGIVTISAGITCWHPPERLDTNSLIKRADEALYHAKLT 562

Query: 251 GRNR 254
           GRNR
Sbjct: 563 GRNR 566


>gi|119487299|ref|ZP_01621050.1| hypothetical protein L8106_21282 [Lyngbya sp. PCC 8106]
 gi|119455854|gb|EAW36989.1| hypothetical protein L8106_21282 [Lyngbya sp. PCC 8106]
          Length = 965

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 13/180 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFK 140
            + EL  +  ++ ++   D L+ + +           F+  +      L  + FDID+FK
Sbjct: 785 DISELKNAETKLREMVEFDSLTQVYSRQYLLGLAERMFM-RIKQEQTSLLCMMFDIDHFK 843

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD  +   S+ +     +    GRLGGEEF A     S +    LA  +R
Sbjct: 844 LINDQYGHKAGDIALIAFSEIVSKNLRSNDIFGRLGGEEFLAVVPEISLEAGKKLAERIR 903

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK---EPISTIIYRADQALYVAKKSGRNRVVC 257
             +E + I + +   I +T+S GI+   +         +I  +D+ALY AK SGRNRV  
Sbjct: 904 LEVEKTPITVGADC-ITMTVSIGISMYKNNKNLATFDELIELSDKALYTAKNSGRNRVCV 962


>gi|220903700|ref|YP_002479012.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867999|gb|ACL48334.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 317

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/197 (31%), Positives = 91/197 (46%), Gaps = 22/197 (11%)

Query: 87  GSILKELFISYNRISQLSRI-------DCLSGLLNHSAFISSLGSY------NEKLSIVF 133
            ++++EL  S +++++LS         D L+GLLN  AFIS             + +++ 
Sbjct: 122 NTMVEELDKSVSKLTRLSSRYKEMSCRDSLTGLLNRRAFISRAMDMLKDPPDQGQAAVIM 181

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DIDYFK+IND +GH  GD V+  ++   +          R GGEEF     G   Q   
Sbjct: 182 ADIDYFKKINDTWGHACGDAVLRHMAQIFLSQLREDDLCCRYGGEEFILLLPGMGLQPGY 241

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIA-------ERCHKEPISTIIYRADQALYV 246
            +A  LR+ I    +    G  I IT S G++                  +  AD  LY 
Sbjct: 242 SVAERLRRHICAEPLAY-EGHDIAITASLGVSCIDLNGPLPDSASVFEMTVKEADSCLYR 300

Query: 247 AKKSGRNRVVCFSDIEN 263
           AKK+GRNRVVC S++  
Sbjct: 301 AKKTGRNRVVC-SEMHQ 316


>gi|183222770|ref|YP_001840766.1| hypothetical protein LEPBI_I3429 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912802|ref|YP_001964357.1| signal transduction protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167777478|gb|ABZ95779.1| Signal transduction protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167781192|gb|ABZ99490.1| Hypothetical protein LEPBI_I3429 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 818

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 11/184 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYF 139
           G  + E  +S  RI+ L+  D L+GL N + FI       +        L+  FFDID F
Sbjct: 369 GVDITERKLSEERITYLAYYDALTGLANRTLFIDHANQALKNHKSTETLLAFYFFDIDNF 428

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILAND 198
           K IND+ GH  GD ++  +  +L  V      V R GG+EFA   +  S +  AA  A  
Sbjct: 429 KFINDSLGHTKGDILLQMVGARLKRVMTEVDTVARFGGDEFAILKVDVSNKSSAAEFAQK 488

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           +  I+  SQ     G  +  TIS GIA   +     + ++  +D A+Y AK+ GRN    
Sbjct: 489 ILDIL--SQPFHIMGRDLFTTISMGIALSPNDGVTSAELLKNSDMAMYKAKELGRNNYKF 546

Query: 258 FSDI 261
           +++ 
Sbjct: 547 YTNE 550


>gi|158424750|ref|YP_001526042.1| GGDEF domain-containing protein [Azorhizobium caulinodans ORS 571]
 gi|158331639|dbj|BAF89124.1| GGDEF domain protein [Azorhizobium caulinodans ORS 571]
          Length = 506

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/220 (30%), Positives = 98/220 (44%), Gaps = 17/220 (7%)

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE----LFISYNRISQLSR 105
           L  +  TP   ++    + +++   +  +S     + G  L+        +   + QLS 
Sbjct: 277 LMLVVGTPVDAIDAEWRQRIAIAGSASALSCFALAVLGFRLRRERIKRAEAEAALEQLSV 336

Query: 106 IDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+GL N   F   +     +       LS+V  D D+FK +ND FGH  GD+ +  +
Sbjct: 337 TDFLTGLANRRRFDEVVQREFRRAVRTDGWLSVVIIDADHFKALNDRFGHSAGDETLKMI 396

Query: 159 SDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +  +            RLGGEEFA     +S   A  L   +R+ +E    N   GP   
Sbjct: 397 ATAISSCARRASDLGARLGGEEFAIVLPDTSAAAAYELTERIRRTMEAHAFN-PDGPPAT 455

Query: 218 ITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNR 254
            T+SAGIA    R   E +  +I  ADQALY AK +GRNR
Sbjct: 456 -TLSAGIASTKDRPAPESVRALIEAADQALYRAKNAGRNR 494


>gi|194365079|ref|YP_002027689.1| two component regulator propeller domain-containing protein
            [Stenotrophomonas maltophilia R551-3]
 gi|194347883|gb|ACF51006.1| two component regulator propeller domain protein [Stenotrophomonas
            maltophilia R551-3]
          Length = 1008

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 80/174 (45%), Gaps = 9/174 (5%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + + L        + +R D L+GL N  AF  +L             L +V  DID+FK 
Sbjct: 832  LAERLARQAEAFERQAREDALTGLANRRAFDETLARDFARSQRSGHPLCLVVLDIDHFKD 891

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            +ND   H +GD V+  ++  +           R GGEEFA     +  +EAA L   LR 
Sbjct: 892  VNDRHSHSIGDAVLVQVATVIAAACRDSDLPARTGGEEFALLLNDTRLEEAAQLCARLRG 951

Query: 202  IIENSQINISSGPSIHITISAGIAERCHKEPISTII-YRADQALYVAKKSGRNR 254
            +  +   + +    + +T SAG+ E    +    ++  RAD+ALY AK  GR+R
Sbjct: 952  LFHDHP-DWAGVDGLRVTFSAGLVELDADDRTPALLYQRADRALYRAKSDGRDR 1004


>gi|186474063|ref|YP_001861405.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phymatum STM815]
 gi|184196395|gb|ACC74359.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phymatum STM815]
          Length = 666

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYF 139
           SG+ + +   +  R+S+L+  D L+GL N +A      +          + I+F D+D F
Sbjct: 219 SGTDITKERNAQERLSELANTDSLTGLPNRNAIHDKTRAAIASAAPGNAVGILFLDLDNF 278

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND++GH  GD++I  +S  +         + RLGG+EF   +  ++      +A  +
Sbjct: 279 KKVNDHYGHVFGDRLIQDVSSAVRECLDGADTLARLGGDEFIVLSPVATVASMEAMAQRI 338

Query: 200 RKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +E  ++  S G   ++   S GIA    H + +  +I  AD A+YVAK  G+     
Sbjct: 339 ---LERLRMPFSLGLVEVYTGCSIGIAMFPEHGDSLEALIRAADTAMYVAKDDGKRTYRV 395

Query: 258 FSDIENN 264
           FS   N 
Sbjct: 396 FSPEMNR 402


>gi|83945515|ref|ZP_00957862.1| stalked-cell differentiation controlling protein [Oceanicaulis
           alexandrii HTCC2633]
 gi|83851091|gb|EAP88949.1| stalked-cell differentiation controlling protein [Oceanicaulis
           alexandrii HTCC2633]
          Length = 450

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 8/172 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L    +   ++S  D L+GL N    +S L          +E L+    DID+FK+IND 
Sbjct: 272 LRDRLDESLEMSVRDALTGLFNRRYTVSRLRQALDGLRANHEPLTTALIDIDHFKRINDT 331

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD+V+  +  +L          GR GGEEF      ++ +EA       R  +  
Sbjct: 332 WGHNAGDQVLKEICARLNEQLRAIDIAGRYGGEEFLVVFSNTTAREACDAMERARLAVCA 391

Query: 206 SQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + + +   G  I++T+S G+AE    + +  +I RAD ALY AK+SGRNRV+
Sbjct: 392 TPVTLRETGDIINVTMSVGVAEAFMDDSVEALIERADTALYDAKRSGRNRVI 443


>gi|120597444|ref|YP_962018.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella sp. W3-18-1]
 gi|146294415|ref|YP_001184839.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella putrefaciens
           CN-32]
 gi|120557537|gb|ABM23464.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella sp. W3-18-1]
 gi|145566105|gb|ABP77040.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella putrefaciens
           CN-32]
          Length = 573

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 11/187 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            S+   L  S+ ++ +L+  D L+ L+N   F       I+     N  L+++  D+D F
Sbjct: 123 ASMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNRAIARAKRSNNYLAVILLDLDDF 182

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILAND 198
           K IND  GH  GD ++  ++ +L  V      + RLGG+EF         +    I+AN 
Sbjct: 183 KAINDTLGHQTGDILLVKVASRLSEVLRDGDVIARLGGDEFVVLVTDDDYKYFPMIVANR 242

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
           L K  E  ++       + I  S G+A         S ++  AD A+Y AKK GRN++  
Sbjct: 243 LLKAFE--EVFCLGDNDVLIGASIGVAFYNEAASDSSELMKCADIAMYRAKKMGRNQIQF 300

Query: 258 FSDIENN 264
           +S+  + 
Sbjct: 301 YSEALDR 307


>gi|190575817|ref|YP_001973662.1| putative GGDEF signaling/response regulator protein
           [Stenotrophomonas maltophilia K279a]
 gi|190013739|emb|CAQ47374.1| putative GGDEF signaling/response regulator protein
           [Stenotrophomonas maltophilia K279a]
          Length = 526

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 15/203 (7%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GS 124
           V   +  +L  G  S  +  +L      + QL+R D L+G+ N   F + L         
Sbjct: 319 VAGFVVATLGFGLRSVLLQTDLLERQAALDQLARQDGLTGVANRREFDARLTSEWNRARR 378

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAA 183
              +L ++  DID+FK  ND  GHP GD+ +  ++  L  +       V R GGEEFA  
Sbjct: 379 SGTELGLLLVDIDHFKAFNDQHGHPAGDRCLQAVAGVLKAIAGRGGDSVARYGGEEFAVI 438

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRAD 241
             GS       LA  LR+ +E   +     P   ++IS G+             ++  AD
Sbjct: 439 VPGSPLSGVLALAERLREAVEALPL-----PEGPVSISVGVGYLHPPALASADQLLADAD 493

Query: 242 QALYVAKKSGRNRVVCFSDIENN 264
             LY AK++GRN+V+  + + ++
Sbjct: 494 AGLYAAKRAGRNQVILHAHVLDD 516


>gi|123442064|ref|YP_001006047.1| hypothetical protein YE1770 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089025|emb|CAL11839.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 691

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 8/179 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDI 136
             +    +         +   +  D L+GL+N       L     +L       + + D+
Sbjct: 509 AVVVFQDVTRARHEQRELQYQANHDMLTGLINRRRLEERLNQAISQLGQDEQHILCYVDL 568

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK +ND+ GH  GD V+  ++  +         V RLGG+EFA        + A  + 
Sbjct: 569 DYFKDVNDSAGHEAGDMVLRMVAQTMQQAVRENDIVARLGGDEFAIVLFNCQNKPATEVL 628

Query: 197 NDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +   I + Q +   G S   T S G ++     E  +  + +AD A Y AK +GRNR
Sbjct: 629 ERVVADIASIQFHWH-GQSYSFTASLGAVSLNRQTETAAQAMRQADIACYAAKHAGRNR 686


>gi|217970377|ref|YP_002355611.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
 gi|217507704|gb|ACK54715.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
          Length = 884

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/190 (27%), Positives = 79/190 (41%), Gaps = 13/190 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDY 138
           S   +     +   + +L+  D L+GL N    +  L       +       ++F D+D 
Sbjct: 429 SARDISARKSAEAEVRKLAYFDALTGLPNRRLLMERLERAQASCARQGTVGALLFIDLDN 488

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL---GSSEQEAAIL 195
           FK +ND  GH  GD+++  ++  LV        V RLGG+EF        G   + A   
Sbjct: 489 FKAVNDTVGHQEGDRLLVQVAAILVRCVRKDDTVARLGGDEFIVMLEELGGEGREAAEQA 548

Query: 196 ANDLRKIIENSQINISSGPSIH-ITISAGIAERCH--KEPISTIIYRADQALYVAKKSGR 252
           A    KI+         G S H  ++S G++       EP+   + RAD A+Y AK  GR
Sbjct: 549 AAVGSKILAALNQRFQLGSSEHRTSVSIGVSLFGELADEPVDEPLRRADMAMYRAKLGGR 608

Query: 253 NRVVCFSDIE 262
           N V  F    
Sbjct: 609 NAVCFFDPSM 618


>gi|213621209|ref|ZP_03373992.1| hypothetical protein SentesTyp_28347 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 205

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 7/183 (3%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFK 140
            +  ++ +L      ++ LS +D L+GL N     + L +     S    ++  DID+FK
Sbjct: 21  FAQQLMFKLLAERETLNGLSMLDPLTGLYNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFK 80

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
             ND++GH +GD+ +  +S  +     +   V R GGEEF      +  Q+A   A  +R
Sbjct: 81  AYNDHYGHMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTTAEPQQARATAERIR 140

Query: 201 KIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + + + +I      S+  ++T+S GIA       I   I +AD+ALY AK  GRN ++  
Sbjct: 141 QEVYDLKIPHMFNESVATNVTVSIGIAPLT-DRNIGDAIEKADKALYEAKHLGRNHILVS 199

Query: 259 SDI 261
            D+
Sbjct: 200 DDM 202


>gi|239993891|ref|ZP_04714415.1| GGDEF domain-containing PAS signal transduction protein
           [Alteromonas macleodii ATCC 27126]
          Length = 777

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 85/190 (44%), Gaps = 13/190 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
            SI  E  ++   I + +  D L+GL N +  +  L          ++K++++F D+D F
Sbjct: 334 ASIAIERELANQLIWKQANFDSLTGLPNRNLMLDHLQLAIKAADRESDKVAVIFLDLDNF 393

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND  GH +GDK++   + ++     +   V RLGG+EF     G        ++   
Sbjct: 394 KDINDTLGHDIGDKLLIECARRIKQCLRSDDTVSRLGGDEFVIILNGIKGLSSIELVVQK 453

Query: 199 LR-KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
           L  +I++   + +     +H + S G+         +  ++  ADQA+Y AK  G+N   
Sbjct: 454 LLGEIVKPYSLEL---ERVHTSASLGVTLYPDDAKDVKGLLKNADQAMYGAKDLGKNNYQ 510

Query: 257 CFSDIENNTC 266
            ++       
Sbjct: 511 YYTHDMQTAA 520


>gi|77461389|ref|YP_350896.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1]
 gi|77385392|gb|ABA76905.1| putative GGDEF domain membrane protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 442

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 68/284 (23%), Positives = 122/284 (42%), Gaps = 36/284 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIF------LFYIG 54
           + +S    L +WL  E    +     +M    + + +FI+  + +A  +      L    
Sbjct: 154 LEQSYPQALLMWLS-EIRWPALHGA-WMSLIQLSYPVFISAFLLLAWQYWRNPRPLHAAQ 211

Query: 55  LTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           L    G+ ++L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL 
Sbjct: 212 LVGLLGVFWMLPKTFILPFTLNIMCSQVMLMIAAAVAHEAY-------QMAFRDELTGLP 264

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A    +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  + G      
Sbjct: 265 GRRALNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKISGGGRAYR 324

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS------------------ 215
             G EEFA    G + +E       +R+ I +  I + +  S                  
Sbjct: 325 YGG-EEFALVFAGKTLEECMPHLEVIRESIASYNIQLRNQESRPQDDQQGRQRRSGSGAS 383

Query: 216 -IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + +T+S G+AER  +     ++  ADQALY AK +GRN V+ F
Sbjct: 384 SVSVTVSIGVAERLEQRTPEEVLKSADQALYSAKGAGRNCVMAF 427


>gi|51244166|ref|YP_064050.1| sensory transduction system regulatory protein [Desulfotalea
           psychrophila LSv54]
 gi|50875203|emb|CAG35043.1| probable sensory transduction system regulatory protein
           [Desulfotalea psychrophila LSv54]
          Length = 449

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 84/184 (45%), Gaps = 12/184 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +  ++  +S  D L+G+ N   F        S        ++++  DIDYFK  ND
Sbjct: 265 ELTEANQKLEHISLTDGLTGIANRRHFDNLIAKEWSRAIREKTPITLIMIDIDYFKLFND 324

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GHP GD  +  ++  L         FV R GGEEFAA    +    A ++A  +R  I
Sbjct: 325 LYGHPEGDICLKTVAMALNAEMRRSTDFVARYGGEEFAAILPNTGGPGALVMAEKMRASI 384

Query: 204 ENSQINISSGP-SIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS- 259
              +I       + ++TIS G            S  I +AD+ALY AK  GRN+   FS 
Sbjct: 385 AKLEIEHKDSEINNYLTISLGAISVVPKKGSDFSHFIEQADKALYTAKTEGRNQARAFSP 444

Query: 260 DIEN 263
           D EN
Sbjct: 445 DGEN 448


>gi|289664597|ref|ZP_06486178.1| response regulator [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289667163|ref|ZP_06488238.1| response regulator [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 494

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/198 (28%), Positives = 91/198 (45%), Gaps = 14/198 (7%)

Query: 71  LVIISITISLLLG--YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG----- 123
           +V+ ++   LLLG        L+ +  +  ++S  + +D L+G+ N  AF   L      
Sbjct: 294 IVVAALGCVLLLGVGIWLDLQLRRMHRNEAKLSTEAWVDALTGIANRRAFDYRLSCALQD 353

Query: 124 --SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEF 180
                 +LS++  D+D+FK  ND +GH  GD  +  ++  +            R GGEEF
Sbjct: 354 AVRLEAQLSVLMIDVDHFKLYNDTYGHVNGDACLRLIASAIASCSRRSEDVAARYGGEEF 413

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKE---PISTI 236
                 +    A  LA+ +R  +    +   S P S H+T+S G A     +     + I
Sbjct: 414 GMILPQTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGAATFEPGQAPLSANAI 473

Query: 237 IYRADQALYVAKKSGRNR 254
           ++ AD ALY AK+ GRNR
Sbjct: 474 VHDADSALYRAKQKGRNR 491


>gi|221210772|ref|ZP_03583752.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Burkholderia multivorans CGD1]
 gi|221169728|gb|EEE02195.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Burkholderia multivorans CGD1]
          Length = 659

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 93/192 (48%), Gaps = 19/192 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDID 137
           SG  + E   +  R+++L+  D L+GL N  A    + +           ++ I+F D+D
Sbjct: 210 SGIDITEERNAQQRLTELANTDVLTGLPNRHAISERIRTVIAQQTGDTPGQVGILFLDLD 269

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAA 193
            FK++ND++GH  GD+++  +S  +     +   + RLGG+EF       +    E  A 
Sbjct: 270 NFKRVNDHYGHITGDRLLQDVSAIINGCLPSGATLARLGGDEFLVLFEQGTRALLEATAQ 329

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
           I+   LR  I    +       ++ + S GIA    H + + T+I  AD A+YVAK++G+
Sbjct: 330 IILERLRTPIHLGLM------EVYTSCSIGIAMHPQHGDSLETLIRNADTAMYVAKEAGK 383

Query: 253 NRVVCFSDIENN 264
           +    FS   N 
Sbjct: 384 HTYRVFSLEMNQ 395


>gi|144898150|emb|CAM75014.1| GGDEF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 470

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 100/212 (47%), Gaps = 17/212 (8%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           ++ +     ++Y L+  + + + SI +     ++      +L     ++   S  D L+ 
Sbjct: 264 HVAIKVSAWVDYRLIAQI-VAVFSIMVLTSTFWVF-----KLRKLNRQLKAASLTDSLTA 317

Query: 112 LLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           L N ++    +         YN   ++V  D+D+FK++ND  GH  GD V+   +   + 
Sbjct: 318 LPNRASLNERMAKEADRFRRYNRPFAVVLLDLDHFKRVNDELGHLTGDTVLVKFATLALQ 377

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           V  T   VGR GGEEF      ++ ++A ++   L + +      +        TISAGI
Sbjct: 378 VARTQDLVGRWGGEEFLILCSETTAEQAQVMTERLCRSVRECDFGLGRRQ----TISAGI 433

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           A     E I  +++RAD ALY AK +GR++VV
Sbjct: 434 AAMRAGETIDVLLHRADLALYAAKNNGRDQVV 465


>gi|160898478|ref|YP_001564060.1| diguanylate cyclase [Delftia acidovorans SPH-1]
 gi|160364062|gb|ABX35675.1| diguanylate cyclase [Delftia acidovorans SPH-1]
          Length = 246

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 97/205 (47%), Gaps = 8/205 (3%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
               E +L E   LV  S    L +  +    L+EL      +   +  D L+G+LN +A
Sbjct: 44  LTAYERLLRETRRLVRRSDRAELEMTQL-NQRLQELAG---ELEYRATHDPLTGVLNRAA 99

Query: 118 FISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            I  +  +   + L+++  DID+FK++ND+FGHPVGD VI  +   L         +GR+
Sbjct: 100 IIERVNRHFTQQGLALIVLDIDHFKRVNDSFGHPVGDSVILGVVRCLKAAVPATAHIGRV 159

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           GGEEF           A  +A  +R  IE     +       IT S G++ R        
Sbjct: 160 GGEEFTVLLPQHDSDGAVCVAEQVRAAIEAHPFGLPDAS--CITASFGVSWRPSGGRFDD 217

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
               AD+ALY AK+SGRN+VV  +D
Sbjct: 218 AYSLADEALYAAKRSGRNQVVRAAD 242


>gi|118591123|ref|ZP_01548522.1| sensory box/response regulator [Stappia aggregata IAM 12614]
 gi|118436199|gb|EAV42841.1| sensory box/response regulator [Stappia aggregata IAM 12614]
          Length = 333

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/182 (31%), Positives = 84/182 (46%), Gaps = 10/182 (5%)

Query: 85  ISGSIL--KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFD 135
           ++GS+L   E      ++ + +  D L+   N   F              +  LSI+  D
Sbjct: 152 LAGSMLDITERKRLEEQLKRAAERDALTDAYNRRRFFELADSAEDRAKKTSASLSILVLD 211

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D+FKQIND FGH  GD  +  +   L  V   P    R GGEEF          +A  +
Sbjct: 212 VDHFKQINDRFGHACGDAALNHIVGLLKNVLQAPHIFARAGGEEFYCLLEECGLDDAFTI 271

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A  +R  +E +  ++     I + +S G+A     E +S  I RAD ALY AK++GRNRV
Sbjct: 272 AERIRGAVETTP-HMHGEQVIPMRVSIGVASVADGEKVSQTIARADDALYCAKQAGRNRV 330

Query: 256 VC 257
             
Sbjct: 331 CM 332


>gi|309790722|ref|ZP_07685272.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oscillochloris trichoides DG6]
 gi|308227253|gb|EFO80931.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oscillochloris trichoides DG6]
          Length = 816

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 12/185 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQ 141
           L+       ++   +  D L+GL N   F   L     K         +++F D+D FK 
Sbjct: 368 LQVRQKIEEQLRHQATHDALTGLPNRMYFSDQLAITLAKNLAGEECTAAVLFLDLDRFKI 427

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           +ND+ GH  GD+V+   + +L         + RLGG+EFA      +   EA  +A+ +R
Sbjct: 428 VNDSLGHAAGDQVLIITARRLRAAVRGGDTLARLGGDEFAILLSQLNGTDEAIQIADRIR 487

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  E        G  + +  S GIA           ++  AD A+Y AK +G  R + F 
Sbjct: 488 E--ELGAPFEVQGVEVALRASIGIAMISSTYSNPDDLLREADTAMYRAKAAGGTRYMIFD 545

Query: 260 DIENN 264
           D+ + 
Sbjct: 546 DVMHQ 550


>gi|291612794|ref|YP_003522951.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291582906|gb|ADE10564.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 812

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 18/193 (9%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + E       I   +  D L+ L N       L           +  +++F D+D FK
Sbjct: 360 SDITEKKQKDELIFWQANYDALTCLPNRRLLNDRLAHALAANKRNEDCGALMFLDLDKFK 419

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG------SSEQEAAI 194
            +ND  GH  GD ++  ++ ++         V R+GG+EF             + Q AA 
Sbjct: 420 TLNDTLGHAYGDMLLVEVARRIKSCVREVDTVARIGGDEFVVLLENLGADIKDATQAAAH 479

Query: 195 LANDLRKIIE-NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGR 252
           +A  +R  +    Q++     S   + S G++   C+ E    +I +AD A+Y AK++GR
Sbjct: 480 IAEKIRASLSTPYQLHDKMHHS---SPSIGVSLIHCNGESAEELIKQADMAMYQAKEAGR 536

Query: 253 NRVVCFSDIENNT 265
           N V  F      +
Sbjct: 537 NAVRFFDPQMQQS 549


>gi|241764147|ref|ZP_04762182.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii
           2AN]
 gi|241366484|gb|EER60984.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii
           2AN]
          Length = 418

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 87/182 (47%), Gaps = 12/182 (6%)

Query: 84  YISGS-ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFD 135
           Y+S S  + E       +   +  D L+GL N       L         +   LS++  D
Sbjct: 234 YVSVSKDISERVSKEQALLDAATRDPLTGLHNRRGGEKILAEAQADARKHGRPLSLLVCD 293

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK++ND FGHPVGD+V+  ++  L +   +   V R GGEEF       +E  AA L
Sbjct: 294 IDHFKRVNDRFGHPVGDRVLRDVACMLRLAVRSRDAVIRWGGEEFVIVLDSCTEARAAEL 353

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A  +R  ++  +          +T+S G+A     E +  ++ RAD ALY AK+ GRNR 
Sbjct: 354 AERIRGRVDAHR----DAEVGALTLSMGLATLLGGETVQQLVGRADAALYDAKRGGRNRW 409

Query: 256 VC 257
             
Sbjct: 410 SV 411


>gi|206602313|gb|EDZ38794.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Leptospirillum sp. Group II '5-way CG']
          Length = 1449

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 11/179 (6%)

Query: 90   LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
            L +       + + +  D L+ L N           I      N  ++++F D+D FK++
Sbjct: 880  LSDRKQEEEELRKKAYFDPLTHLANRHLMEGELSRSIEVARRNNMSMAVLFLDLDGFKEV 939

Query: 143  NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRK 201
            NDN GH  GDK++  ++ +L  +      V RLGG+EF        +  E    A  +  
Sbjct: 940  NDNHGHEFGDKLLVHVAGRLEKLIRHGDLVSRLGGDEFVVILNNIRNPAEVRAAAGRILA 999

Query: 202  IIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
             I+     +  G ++ I  S GI+   +++   S+++  ADQA+Y+AK  G+N  V ++
Sbjct: 1000 GIQA--PYLIDGQTMIIGTSIGISVYPNEDKDPSSLLREADQAMYLAKNRGKNNFVLYT 1056


>gi|104782240|ref|YP_608738.1| diguanylate cyclase [Pseudomonas entomophila L48]
 gi|95111227|emb|CAK15947.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           entomophila L48]
          Length = 531

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 9/169 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           L     R+++ ++ D L+GL+N       +S L +     S +  D+D+FK++ND  GH 
Sbjct: 361 LQERIGRLNRDAQTDPLTGLVNRRGLEFALSLLQAEGRDFSAIVLDVDHFKRVNDGHGHA 420

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD V+  L++ +         + R GGEEF     G+S + A  +A  LR  ++N+ I 
Sbjct: 421 VGDTVLHRLAELMRGACREGDVLCRTGGEEFLMLLPGASLEAALSVAERLRLAVQNTAIA 480

Query: 210 ISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256
              G    +T+S G+A             +  AD+ALY AK++GRNRV 
Sbjct: 481 PVGG----VTVSLGVARWQALPDSEPDATLKAADRALYQAKRAGRNRVC 525


>gi|254422258|ref|ZP_05035976.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196189747|gb|EDX84711.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 547

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 13/186 (6%)

Query: 85  ISGSILKELFISY--NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFD 135
           I+     E+ +      + QL+++D L+ + N  +F   +             LS++  D
Sbjct: 357 ITNRKRAEVALQNFNQELEQLAKMDGLTQVANRRSFDKYMERVWSNVDSTQSSLSLILCD 416

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           IDYFK+ ND +GH  GD  +  ++  +   V      V R GGEEFA     ++   A  
Sbjct: 417 IDYFKRFNDTYGHQAGDLCLRQVAKAIEQAVKRNTDLVARYGGEEFAVVLPDTNVSGAKR 476

Query: 195 LANDLRKIIENSQINISSGP-SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSG 251
           +A D+ + +    I  S+   S  +T+S GIA      K  +  ++  ADQ LY AK SG
Sbjct: 477 VAEDICETVRQLNIMHSASEVSDRVTLSLGIASISSPQKIELDQLVAAADQGLYDAKSSG 536

Query: 252 RNRVVC 257
           R+    
Sbjct: 537 RDCFCV 542


>gi|268680440|ref|YP_003304871.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618471|gb|ACZ12836.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 821

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 86/174 (49%), Gaps = 8/174 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           EL +   ++  L+ ID L+ + N   F         +    N  L I+  DID+ K++ND
Sbjct: 647 ELSLLNAKLKDLANIDELTKIANRRYFFLLATQYFHAAKRNNTPLHILSIDIDWLKKVND 706

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH +GD+V+      +          GR+GGEEF      +  Q A ILA  +R  +E
Sbjct: 707 TYGHAMGDEVLKAFCKHVQSSLRQSDLFGRIGGEEFCVCIQNTPLQGAKILAEKIRHKVE 766

Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            S+ +I++     IT+S G++      E I   + R+D+ALY AK  GRN+V  
Sbjct: 767 ASRESINNQALPAITVSIGLSSLHPEDEEIFDTLKRSDEALYKAKHHGRNQVQI 820


>gi|189423772|ref|YP_001950949.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
 gi|189420031|gb|ACD94429.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
          Length = 703

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 11/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + +   +   I  L+  D L+GL N +     L             + ++F D+D FK 
Sbjct: 261 DVTDRTRAEQEIHHLANYDTLTGLPNRNLLHDRLQQAIVQAARVQGSVGVLFLDLDRFKG 320

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLR 200
           +N+  GH  GD+++  ++++L V       + R GG+EF     + S E   +  A+ + 
Sbjct: 321 VNELLGHRAGDQLLRTVAERLRVCVRESDTLARAGGDEFVIILSVVSDEDGISSAASKIL 380

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            II  S+  +     +++T S G+A        + +++  AD A+Y AK   RN    FS
Sbjct: 381 AII--SEPFVIEERELYLTASIGVAVYPTDGADVQSLLKHADLAMYQAKDMDRNNFQFFS 438

Query: 260 DIEN 263
              N
Sbjct: 439 SDLN 442


>gi|115525797|ref|YP_782708.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
 gi|115519744|gb|ABJ07728.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
          Length = 260

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 114/230 (49%), Gaps = 15/230 (6%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSL---VIISITISLLLGYISGSILKELF 94
             ATV  +A I   ++G  P   +   +V   ++   V++S  +S  L Y S  +L++L 
Sbjct: 25  LTATVTSVAVI--AHLGADPSVTVPVGMVTASAIMVSVVVSTLLSGALSYRSALLLQQLT 82

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFG 147
            +   + ++SR D L+GLLN   F              N ++  +  DID+FK +ND+FG
Sbjct: 83  KAQAELLRVSRTDPLTGLLNRRGFDEAAVAVLQQARQANREVVALMGDIDHFKSVNDHFG 142

Query: 148 HPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  GD+V+  +   L          V R GGEEFAA  +G S  +A   A  LR++    
Sbjct: 143 HEFGDRVLCEIGGVLQRFAASHGALVARHGGEEFAALFVGVSAAQAVQYAETLRELCRTE 202

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                   +  IT+S G+     +  +S+I+  AD+ALY AK+ GR+RVV
Sbjct: 203 --VRLGAATAPITLSIGLTSHIGETELSSIMRWADRALYQAKERGRDRVV 250


>gi|300856263|ref|YP_003781247.1| membrane associated GGDEF domain-containing protein [Clostridium
           ljungdahlii DSM 13528]
 gi|300436378|gb|ADK16145.1| membrane associated GGDEF domain containing protein [Clostridium
           ljungdahlii DSM 13528]
          Length = 374

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 70/204 (34%), Positives = 103/204 (50%), Gaps = 13/204 (6%)

Query: 71  LVIISITISLLLGYISGSILKEL---FISYNRISQLSRIDCLSGLLNHSAFISSLGSYN- 126
             II    ++LL Y     ++ L   F  Y +    + ID L+GL N   F  SL   + 
Sbjct: 160 FFIIYYIYTILLTYFIYKFIESLTKTFEVYKKYRTEASIDFLTGLNNVRWFNKSLNRISI 219

Query: 127 --------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                   + LS++  DIDYFK+IND +GH  GD V+  L++ L         V R GGE
Sbjct: 220 AMEKKEKIKCLSLILLDIDYFKKINDKYGHSSGDIVLKNLANILNDTCRAFNIVSRNGGE 279

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTII 237
           EF+   L     +A  +A  +RK IE    +IS G ++HITIS+G++      + I  ++
Sbjct: 280 EFSVLLLNYPAADAVQVAERIRKNIEAYPFHISDGITVHITISSGVSTYPSTTDNIDNLL 339

Query: 238 YRADQALYVAKKSGRNRVVCFSDI 261
              D ALY AK +GRN+VV + + 
Sbjct: 340 DDTDTALYEAKNTGRNKVVLYKEE 363


>gi|293604846|ref|ZP_06687243.1| sensory box protein [Achromobacter piechaudii ATCC 43553]
 gi|292816674|gb|EFF75758.1| sensory box protein [Achromobacter piechaudii ATCC 43553]
          Length = 665

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D L+ L N  A  + L +  E     +  ++F D+D FK
Sbjct: 219 SGTDITEERQAQERLRVLANTDMLTNLPNRHAITARLKAALEVGQEGRGGVLFLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND++GH  GD+++  +S  +         + RLGG+EF      +   E    A  + 
Sbjct: 279 RINDHYGHGFGDRLLKAVSVAISTCLSPGQTLARLGGDEFIVLQEQAQAWELEATAERI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             IE  +     G   ++ + S GIA    H   + +++  AD A+YVAK++GR+    F
Sbjct: 338 --IERLREPFRQGLIEVYTSCSIGIAMYPDHGADLDSVVRSADIAMYVAKEAGRHTYRVF 395

Query: 259 SDIENN 264
               + 
Sbjct: 396 QPDMDR 401


>gi|289666115|ref|ZP_06487696.1| GGDEF family protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 944

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 86/172 (50%), Gaps = 10/172 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           +EL  +   +S  +  D L+GLLN +  +++L             L++V  D+D+FK +N
Sbjct: 763 RELEAARAELSLKATHDELTGLLNRAGILAALREMLLHAARSGRPLAVVLIDLDHFKLVN 822

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD V+A +  ++  +      +GR GGEE  A   G +      L    R I 
Sbjct: 823 DQHGHLAGDAVLAGVGRRMDTLVRGDDRIGRYGGEELLALLPGLNLDATHRLEALHRDIC 882

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  I    G  +H+T S G+A     E +  ++ RAD ALY AK++GRNR+
Sbjct: 883 GDYPI---DGSWLHVTCSIGVAWFQPGETLEQLLARADAALYSAKRNGRNRI 931


>gi|283785416|ref|YP_003365281.1| signal transduction protein [Citrobacter rodentium ICC168]
 gi|282948870|emb|CBG88472.1| putative signal transduction protein [Citrobacter rodentium ICC168]
          Length = 667

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 88/185 (47%), Gaps = 8/185 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG  + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 219 SGIDITEERRAQERLRVLANTDTITGLPNRNAIHELINEAIANASGGQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  L+        + RLGG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHMFGDQLLQAVSLALLSCLEENQILARLGGDEFIVLASHTSQSSLEAVASRIL 338

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +   Q      P ++   S GIA    H E   ++I  AD A+Y AK+ GR +   FS
Sbjct: 339 TRLR--QPFRIGLPEVYTGCSVGIAMAPQHGEDSHSLIRNADTAMYTAKEGGRGQFCVFS 396

Query: 260 DIENN 264
              N 
Sbjct: 397 PEMNE 401


>gi|260775400|ref|ZP_05884297.1| sensory box/GGDEF family protein [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608581|gb|EEX34746.1| sensory box/GGDEF family protein [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 582

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 11/184 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +LS ID L+ + N   F   L           + LSI+  DIDYFK  N
Sbjct: 399 QKLEEANLELERLSFIDSLTQISNRRRFDEQLSTLWPLHVRERQPLSIMLCDIDYFKGFN 458

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+ +  ++     V   T   V R GGEEF      ++ + A  +A+ +   
Sbjct: 459 DFYGHQEGDEALMKVAGVFKAVLSRTSDCVARYGGEEFGFILPNTTAEGAQQVADKIHDE 518

Query: 203 IENSQINISSGP-SIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I +  +   +   S  +T+S G+        +   ++I  AD ALY AK +GRN+     
Sbjct: 519 IASLALEHKASEVSTVLTVSIGLVTMIPQPYDNSESLIALADSALYQAKANGRNQTCVHH 578

Query: 260 DIEN 263
             EN
Sbjct: 579 TSEN 582


>gi|241761674|ref|ZP_04759761.1| diguanylate cyclase with beta propeller sensor [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|241373982|gb|EER63515.1| diguanylate cyclase with beta propeller sensor [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 839

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/182 (34%), Positives = 99/182 (54%), Gaps = 11/182 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFF 134
           L ++      EL  +  ++S+L+  D L+GLLN  A ++ L   ++        +SI   
Sbjct: 659 LQHLVDGRTHELQQANKQLSELANTDVLTGLLNRRALMAKLSELHQDALLNENAISIAML 718

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D+FK+IND +GH VGD V+   +  +        F GR GG+EF   A+ +S + +  
Sbjct: 719 DVDHFKKINDRYGHLVGDDVMRNAASIIRNNIRQEDFAGRYGGDEF-IIAISASIEMSRH 777

Query: 195 LANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +A  +R   E ++I I +G   + IT+S G+ E   +E IS  + +AD  LY AK +GRN
Sbjct: 778 IAERIRN--EFTKIVIKNGETELKITVSIGLFEITTEESISIALDKADSLLYWAKNNGRN 835

Query: 254 RV 255
           RV
Sbjct: 836 RV 837


>gi|291288444|ref|YP_003505260.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885604|gb|ADD69304.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809]
          Length = 643

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 11/166 (6%)

Query: 99  RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+  +S  D L+ L N           I   G Y +  S++  DID+FK +NDNFGH  G
Sbjct: 481 RLLLMSITDPLTKLYNRIKVDEILDYEIEQAGRYGKDFSVLISDIDHFKDVNDNFGHQTG 540

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  +++ L     +   V R GGEEF      +  ++AA +A  LR  IE+    + 
Sbjct: 541 DEVLKIIAELLNDNTRSSDTVARWGGEEFLIIFTNTPLEDAATIAEKLRTKIESYDFPVG 600

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                 +T S G+A+  + E     I RAD ALY AK   RN VV 
Sbjct: 601 R----TVTASFGVAQYVNGEQKEHFIKRADDALYAAKNKSRNVVVA 642


>gi|149194839|ref|ZP_01871933.1| diguanylate cyclase (GGDEF domain) [Caminibacter mediatlanticus
           TB-2]
 gi|149134998|gb|EDM23480.1| diguanylate cyclase (GGDEF domain) [Caminibacter mediatlanticus
           TB-2]
          Length = 508

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 88/175 (50%), Gaps = 8/175 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQI 142
           +K L     ++S+  + D L+ + N  A +  L              S+VFFDID+FK I
Sbjct: 334 IKYLEKKVKKLSKEVKTDFLTNIANKKAIMEELKRQESSFKRYGTNYSVVFFDIDHFKNI 393

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD ++  L             +GR GGEEF A    ++   A   A  LRKI
Sbjct: 394 NDTYGHDAGDVILKSLGLLFKRYARDVDMIGRFGGEEFVAILPNTNIDGACKFAEKLRKI 453

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +E ++    +   I++T+S G+A R     +   +  AD+ LY AK+SGRNR+VC
Sbjct: 454 VEKTKFMYKN-TRINVTVSGGVASRNETNSMDETLKLADERLYKAKRSGRNRIVC 507


>gi|167032897|ref|YP_001668128.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida GB-1]
 gi|166859385|gb|ABY97792.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida GB-1]
          Length = 562

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/208 (25%), Positives = 90/208 (43%), Gaps = 20/208 (9%)

Query: 70  SLVIISITISLLLGYISGSILK---------ELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           SL  +  T+  L+  ++G + K         E     + +      D L+GL N +    
Sbjct: 85  SLYWVDSTMVPLIDPLTGQVRKYVSIRFDVTEKRQLLHTLQWRVGHDVLTGLPNRAYLSD 144

Query: 121 SL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L          +  L++   D+D FK +ND +GH VGD ++  ++ +L  +      V 
Sbjct: 145 LLNQALAYSRREDIPLAVCMLDLDGFKAVNDGYGHAVGDLLLVEVAQRLKSILRGGDAVA 204

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERC-HKE 231
           RL G+EF        +++    A  LR+++       +     + ++ S G+       E
Sbjct: 205 RLSGDEFVLILRDVDDEQQLHAA--LRRVLRALAAPCVVREHRLSLSASIGVTLYPQDDE 262

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
              T++  ADQA+YVAK+ GRNR   F 
Sbjct: 263 DADTLVRHADQAMYVAKQRGRNRYHLFD 290


>gi|24373770|ref|NP_717813.1| sensory box protein [Shewanella oneidensis MR-1]
 gi|24348153|gb|AAN55257.1|AE015663_7 sensory box protein [Shewanella oneidensis MR-1]
          Length = 752

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 9/187 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQ 141
           S + E   +   I   +  D L+GL N +A    +             S +  D+D FKQ
Sbjct: 299 SDVSERKKAAQLIKYQANNDSLTGLANRNALFRQIQELINADSLTPGFSFMLMDLDNFKQ 358

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           +ND +GH  GD ++  + +Q+ +         RLGG+EFA    G  +++E + LA+ + 
Sbjct: 359 VNDTYGHDKGDVLLVQMVEQVKICLDPQAVFARLGGDEFAILLPGVVTQRELSQLADKIN 418

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           K +   +  +S    ++ ++S GIA        +  ++  ADQA+Y++K +GRNR   F+
Sbjct: 419 KQVYR-RYELSHDKGVYSSVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFT 477

Query: 260 DIENNTC 266
           +      
Sbjct: 478 EQMQQNA 484


>gi|113969555|ref|YP_733348.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113884239|gb|ABI38291.1| diguanylate cyclase [Shewanella sp. MR-4]
          Length = 578

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 61/193 (31%), Positives = 92/193 (47%), Gaps = 12/193 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEK 128
           IT +L L  +  S+   L     ++  ++  D L+G  N     S +         +N  
Sbjct: 378 ITDNLELQQMVSSLET-LKTYAAQVKAMAETDGLTGCYNRRYLDSQIKKELSYANDHNMP 436

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGS 187
           LS+V FDID FK+ ND +GH  GD+ +  + D    +       + R GGEEF      S
Sbjct: 437 LSVVMFDIDNFKEFNDKYGHVAGDQCLKQVVDAAKSILQRPTDILARYGGEEFTLLLPSS 496

Query: 188 SEQEAAILANDLRKIIENSQINI-SSGPSIHITISAGIAERCHKEPIST--IIYRADQAL 244
             ++A  +A  LR+ I    I   SS  S  +TIS G+A     + +    +I  AD+AL
Sbjct: 497 HCEDAYRIAERLRETIMELAIPHQSSSHSGVVTISLGVACWQPAQSLDANLVISDADEAL 556

Query: 245 YVAKKSGRNRVVC 257
           Y AK++GRNR + 
Sbjct: 557 YQAKQAGRNRTIA 569


>gi|320333964|ref|YP_004170675.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
 gi|319755253|gb|ADV67010.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
          Length = 615

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 8/171 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNF 146
               + +   S  D L+ L N      +L             +S++  DID+FK+ ND F
Sbjct: 435 LQLRDTLHNQSIRDPLTRLFNRRYLEETLARELRRSERSSVPVSVLAVDIDHFKRFNDTF 494

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD  +  ++D +   F     V R GGEEF    L +   +A   A  LR+ +   
Sbjct: 495 GHDGGDATLKAVADAMTAHFRAEDVVCRYGGEEFMVVLLDTPHADALARAEGLRRTVREL 554

Query: 207 QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            +  +      I++S G+A     +     ++ +AD ALY AK++GR+RVV
Sbjct: 555 HVTHAGASLGTISVSVGVATSERGQVTGHQLVAQADAALYQAKRAGRDRVV 605


>gi|307326521|ref|ZP_07605716.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces violaceusniger Tu 4113]
 gi|306887929|gb|EFN18920.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces violaceusniger Tu 4113]
          Length = 970

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 80/197 (40%), Gaps = 19/197 (9%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
            +   + E      ++   +  D L+ L N + F   +          +   ++ F D+D
Sbjct: 454 FNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTRRVRHAVGGRRRTDAGTAVFFIDLD 513

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSS------- 188
            FK +ND  GH  GD+++   + +L     +       RLGG+EFA   +G         
Sbjct: 514 GFKAVNDTVGHHAGDELLVQAARRLQESVRSGSGDCAARLGGDEFATLIIGDGDGAGDAG 573

Query: 189 --EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
             EQ    +A+ LR  +      +  G  + +  S G+A          ++  AD A+Y 
Sbjct: 574 AREQRIMEIADRLRVRLSQ-PYRVEGGTEVRVAASIGVAFAEPGTSPGALMRNADLAMYR 632

Query: 247 AKKSGRNRVVCFSDIEN 263
           AK +G+NRV  ++    
Sbjct: 633 AKAAGKNRVELYAPQMQ 649


>gi|316935058|ref|YP_004110040.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
 gi|315602772|gb|ADU45307.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
          Length = 284

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 112/227 (49%), Gaps = 14/227 (6%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVI---ISITISLLLGYISGSILKELFISY 97
           T I      +  +G      +E   V   SL++   +S T+S  + Y S  ++++L  + 
Sbjct: 26  TAIVTLVFLISDLGTDWSATVEVGAVVKASLLVALGVSTTLSGAMAYRSARLMQQLTSTR 85

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
             + ++SR D L+GLLN   F  +  +         + +  +  D+D FK IND++GH +
Sbjct: 86  AELVRMSRTDTLTGLLNRRGFDEAAATLLGRASFTGQPVVALMCDLDRFKAINDHYGHTI 145

Query: 151 GDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD+V+A +   L        M + R GGEEFA   +G S+++A   A +L +        
Sbjct: 146 GDRVLAEIGGILRDFAAPRGMLIARHGGEEFAGLIVGVSDEQANDYALELCRRCATE--V 203

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              G  + +T+S G+A       +S+++ RAD ALY AK  GRN VV
Sbjct: 204 ACDGRRVAVTMSFGLATYGGG-DLSSLMRRADLALYRAKDLGRNCVV 249


>gi|209885769|ref|YP_002289626.1| diguanylate cyclase [Oligotropha carboxidovorans OM5]
 gi|209873965|gb|ACI93761.1| diguanylate cyclase [Oligotropha carboxidovorans OM5]
          Length = 379

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 74/246 (30%), Positives = 122/246 (49%), Gaps = 19/246 (7%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFY-IGLTPFYGLEYILVENLSLVIISITISLLLG 83
            + M+   I +++  A    +A +FLF  I ++  +G        L L + +I+  +++G
Sbjct: 135 RSTMLQIGIAWTLITAG---LAVLFLFTDIPISMPHGSPAERFATLLLFVFTISRCMMIG 191

Query: 84  YISGSILK-------ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKL 129
             S ++ +        L  +Y RI +L+  D L+G  N  + + +L              
Sbjct: 192 MFSSALRESFYSQGLALKEAYRRIEELAEFDELTGAHNRRSIMHALAEEAERAARSKSPC 251

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S+   D+D+FK+IND+FGHPVGD+V+   +  L          GR GGEEF      + E
Sbjct: 252 SVALIDLDWFKKINDHFGHPVGDEVLRTFAITLFANIRLIDKFGRYGGEEFLLVLPEAGE 311

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
             A  + + LR I+ +   N S  P + +T+SAG+A     E + +++ RAD ALY AK 
Sbjct: 312 DVAGRVVDRLRTIVADVDWN-SISPGVDMTMSAGVATLLPGETVDSLLLRADVALYRAKD 370

Query: 250 SGRNRV 255
            GRNR+
Sbjct: 371 LGRNRI 376


>gi|89902019|ref|YP_524490.1| PAS/PAC and Chase sensor-containing diguanylate
           cyclase/phosphodiesterase [Rhodoferax ferrireducens
           T118]
 gi|89346756|gb|ABD70959.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Rhodoferax ferrireducens T118]
          Length = 1036

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/214 (25%), Positives = 94/214 (43%), Gaps = 13/214 (6%)

Query: 64  ILVENLSLVIISITISLLLGYISGS-ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +  + LS+ ++      +  YI+    + E   +  RI +L+  D L+GL N +  +   
Sbjct: 558 VYPQLLSISVVKDADGTVTHYIAAHHDISERKNAEERIKELAFFDQLTGLANRTLLLDRA 617

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                         +++F D+D FK +ND  GH +GD ++  ++ +L         V RL
Sbjct: 618 VQTMAASSRDGSFGALMFIDLDNFKMLNDTLGHDMGDILLKQVAQRLNTCVRDGDTVARL 677

Query: 176 GGEEFAAAA--LGSSEQEAAILANDLRKII--ENSQINISSGPSIHITISAGIAERCHKE 231
           GG+EF      LG+   EAA+ A  +   I    +Q       + H T S G+     + 
Sbjct: 678 GGDEFVVKLAGLGTVAGEAAVSAETVADKILTALNQTYQLGSVAYHSTPSIGVTLFKGQS 737

Query: 232 -PISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             I  ++ +AD A+Y AK + RN V  F     +
Sbjct: 738 VAIEELMKQADLAMYRAKAASRNTVRFFDPAMES 771


>gi|28867535|ref|NP_790154.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213971644|ref|ZP_03399752.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
           T1]
 gi|301385613|ref|ZP_07234031.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302061519|ref|ZP_07253060.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
           K40]
 gi|302134621|ref|ZP_07260611.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28850770|gb|AAO53849.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213923600|gb|EEB57187.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
           T1]
 gi|331014833|gb|EGH94889.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 332

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
              + +     + + +L+  D L+   N   F                 L+ +  DID F
Sbjct: 154 AEDITDKKHLEDELQRLATTDVLTQSSNRRHFFECAQREFELARLNGTPLAFLLLDIDDF 213

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND +GH  GD V+  +++            GR+GGEEFAA   G + + A  +A  L
Sbjct: 214 KLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCAPEMAMQIAERL 273

Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++ I+      ++G +  IT S G+       + +  +  RAD A+Y AK+ G+N++V 
Sbjct: 274 QREIQRQNFQ-ANGSTFSITASQGLTNLGPEDQGLEALYGRADAAMYQAKRQGKNQIVL 331


>gi|294815266|ref|ZP_06773909.1| Integral membrane phosphodiesterase [Streptomyces clavuligerus ATCC
           27064]
 gi|326443621|ref|ZP_08218355.1| putative integral membrane phosphodiesterase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294327865|gb|EFG09508.1| Integral membrane phosphodiesterase [Streptomyces clavuligerus ATCC
           27064]
          Length = 926

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 16/193 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKL-SIVFFDID 137
            +   + E      ++   +  D L+ L N + F   +G         +   +++F D+D
Sbjct: 452 FNSRDVTERVRLQAQLQHSAEHDPLTDLPNRALFTERVGQALTGRRAGDPGTAVLFIDLD 511

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-------EQ 190
            FK +ND  GH  GD+++   + +L     +     RLGG+EFAA  LG         E 
Sbjct: 512 GFKGVNDRLGHQAGDELLIQAAQRLGDSVRSGDTAARLGGDEFAALILGDGIRDQASRES 571

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +   +A  LR  +  SQ     G  + +  S G+A        S ++  AD A+Y AK  
Sbjct: 572 QVVEIAERLRLTL--SQPYRIDGQDVRVAASIGVAFAEKGIAPSVLMRNADLAMYRAKAG 629

Query: 251 GRNRVVCFSDIEN 263
           G++RV  ++    
Sbjct: 630 GKDRVELYAPQMQ 642


>gi|302879536|ref|YP_003848100.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
           capsiferriformans ES-2]
 gi|302582325|gb|ADL56336.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
           capsiferriformans ES-2]
          Length = 720

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 78/192 (40%), Gaps = 21/192 (10%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + E      +I QL+  D L+ L N       +              +++F D+D FK 
Sbjct: 526 DITERTQFEAQIRQLAYYDTLTQLPNRRLLNDRMNQVIASSRRSGCHAALMFLDLDNFKP 585

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS------EQEAAIL 195
           +ND +GH VGD ++   + +L         V R GG+EF                EA  +
Sbjct: 586 LNDTYGHAVGDLLLVEAASRLKNCVREMDTVARFGGDEFVVMLSELDRGQAGAAAEALNV 645

Query: 196 ANDLRKIIENS-------QINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVA 247
           A  +R ++  S       +  + +    H T+S G+     H+     ++  AD A+Y A
Sbjct: 646 AEKIRSVLSQSYSLTISREERVDTLVRHHCTVSIGVVLFVDHQGSQDEVLKWADAAMYQA 705

Query: 248 KKSGRNRVVCFS 259
           K  GRN++  + 
Sbjct: 706 KDGGRNQIRFYE 717


>gi|237653803|ref|YP_002890117.1| diguanylate cyclase [Thauera sp. MZ1T]
 gi|237625050|gb|ACR01740.1| diguanylate cyclase [Thauera sp. MZ1T]
          Length = 614

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 8/172 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDN 145
           L       S+L R D L+G LN                    +L++   DID+FK++ND+
Sbjct: 439 LQNELEEASRLMRHDQLTGALNRRGLDEMFQTESARAQRRGTRLAVALLDIDHFKKLNDS 498

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD  +  L+  +         + R GGEEF      + + +A      L++ +  
Sbjct: 499 LGHKGGDDALVHLAKVVRQHLRPQDVLARYGGEEFVILLPETGDTDAQQALVRLQREL-T 557

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +  ++    I IT SAG+      E + + + RAD A+Y AK++GRNRV+ 
Sbjct: 558 REFFMAEMQKIVITFSAGVTRLAEGESLESALKRADGAMYQAKQAGRNRVMV 609


>gi|207742221|ref|YP_002258613.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           IPO1609]
 gi|206593609|emb|CAQ60536.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           IPO1609]
          Length = 953

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 10/179 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136
           Y     + E   S   +S+++  D L+GL N       L +  E+       + +++ D+
Sbjct: 773 YAFVQDVTEAKRSEMELSRMAHFDALTGLANRYELYERLRAALERRQRQPALMGVLYLDV 832

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAIL 195
           D+FK+IND +GH  GD V+  ++ +L         V RL G+EF        +  +A   
Sbjct: 833 DHFKRINDTYGHAAGDAVLVEVARRLQHTVRRTDTVARLAGDEFVILLDPIDTSDDALHT 892

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           A  +   I    I +    ++ +T S G+A           ++  AD+ALY AK  GR+
Sbjct: 893 AQKVVSAIR-PPIQLRGDIALKVTASIGVACPGLDAADADAVLREADRALYWAKSRGRD 950


>gi|146339374|ref|YP_001204422.1| hypothetical protein BRADO2356 [Bradyrhizobium sp. ORS278]
 gi|146192180|emb|CAL76185.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
          Length = 379

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 104/227 (45%), Gaps = 13/227 (5%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVE--NLSLVIISITISLLLGYISGSILKELF-ISYNRI 100
              N+ ++      FY    + +   N+  +    T   + G     +L++L  ++ + +
Sbjct: 96  LAGNVLVYGKPFIRFYAGAQLRISGTNVGTLCAMDTRPRVFGARDVEMLRDLAALAVDEL 155

Query: 101 --SQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
               LS  D L+G L+  AF S           +   L+    D+D+FK +NDN GH  G
Sbjct: 156 MLRNLSLRDGLTGALSRRAFRSEGERLRALAERHRHPLTCALLDVDHFKSVNDNHGHAAG 215

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V++ +      V      +GRLGGEEF      +S  +A  +   +R  + +  I   
Sbjct: 216 DLVLSKVVGACQNVLRASDVIGRLGGEEFGIILPHTSLDDAMAVLEKMRSAVADLSIESP 275

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           SGP I IT S G  +    +P   ++ RAD+A+Y AK  GRN+V+ +
Sbjct: 276 SGP-IRITASFGAVDLTPGQPFDAMLARADRAMYAAKNGGRNQVIAW 321


>gi|71278615|ref|YP_267882.1| GGDEF/GAF/EAL domain-containing protein [Colwellia psychrerythraea
           34H]
 gi|71144355|gb|AAZ24828.1| GGDEF/GAF/EAL domain protein [Colwellia psychrerythraea 34H]
          Length = 781

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 12/192 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLS 130
           + +  +L  I G  L  + +   ++   +  D L+GL N   F   +            +
Sbjct: 328 LGVIKMLSGIMGVTLSRVNL-QEQLEHQACYDTLTGLPNRHQFNQRMELAITQDNPIPFT 386

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F D+D FK +ND  GH VGD+++  ++ ++        F  R GG+EF    L    +
Sbjct: 387 LLFIDLDRFKVVNDTMGHDVGDELLCRVTQRINQQIRKEDFAARHGGDEFVVLLLNKQSK 446

Query: 191 EAAIL--ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVA 247
             A +  A  ++ + E  QI      SI I  S GI+    H +    ++  AD A+Y A
Sbjct: 447 AIADITSARIIKALKEPFQI---DEHSIFIGASIGISYFPEHSKNSEELLKYADIAMYHA 503

Query: 248 KKSGRNRVVCFS 259
           KK G++    +S
Sbjct: 504 KKQGKSSFKLYS 515


>gi|320105453|ref|YP_004181043.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Terriglobus saanensis SP1PR4]
 gi|319923974|gb|ADV81049.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Terriglobus saanensis SP1PR4]
          Length = 1029

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 99/212 (46%), Gaps = 19/212 (8%)

Query: 65  LVENLSLVIISITISLLL-------GYI-SGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           + ++ S + + +T++ L        GY+     + E     + IS L+  D L+GL    
Sbjct: 553 IRKDGSRLPVQLTVTALTDDYGHETGYMGIAYDITERKRQQDYISHLAHHDSLTGLPTRI 612

Query: 117 AF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            F       ++ +  Y  K +++  D+D FK IND+ GH  GD+V+  ++ +L  V  + 
Sbjct: 613 LFKDRVDVALARVQRYGGKCALMLIDLDNFKDINDSLGHHAGDEVLIVIAQRLKEVLRST 672

Query: 170 MFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
             V R+GG+EF       +SE++A   A  L   +  S+  +     + I+ S GI+   
Sbjct: 673 DTVSRMGGDEFTVLLDHITSEEDATTAAVKLLATL--SKPILIGEDLLPISASIGISIYP 730

Query: 229 HKEPIS-TIIYRADQALYVAKKSGRNRVVCFS 259
                S  ++  AD A+Y AK SG+     F+
Sbjct: 731 EGGATSGNLLKNADAAMYYAKGSGKQSYRLFT 762


>gi|94267023|ref|ZP_01290667.1| GGDEF:EAL [delta proteobacterium MLMS-1]
 gi|93452277|gb|EAT02921.1| GGDEF:EAL [delta proteobacterium MLMS-1]
          Length = 885

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 86/198 (43%), Gaps = 10/198 (5%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------ 120
           +++  +++   +S LL  +    +K +    + +   +  D L+ L N   F        
Sbjct: 425 DSIYHIVLDSVLSTLLNLVGS--VKAISKYTHDLEYYATRDPLTQLHNQRMFWELLGYEV 482

Query: 121 -SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                ++   +++  D+D FK +ND +GH  GD ++  L++ L        FV R GG+E
Sbjct: 483 GRAQRHDYPFALIMIDMDNFKTVNDQYGHAFGDMILQQLAEALRQAVRDGDFVARYGGDE 542

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIY 238
           F      +S ++A  +A  + K I    +    G  +  T+S G+A    H +    +  
Sbjct: 543 FTILLPETSREQALTVAERIIKSISGMGVLTPDGVRVQATVSLGLAMYPEHGKSAKDLFL 602

Query: 239 RADQALYVAKKSGRNRVV 256
            AD  +Y  K  G+N + 
Sbjct: 603 VADNMMYKVKGEGKNNIA 620


>gi|26987111|ref|NP_742536.1| GGDEF domain-containing protein [Pseudomonas putida KT2440]
 gi|24981740|gb|AAN66000.1|AE016229_1 GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 400

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 73/283 (25%), Positives = 122/283 (43%), Gaps = 35/283 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIY---FSIFFSIFIATVI--FIANIFLFYIGL 55
           + +S  + L  WL  E    +   H   +    + +F  +FI  V+    A   L    L
Sbjct: 114 LQQSYPEALLTWLA-EIRWPALHGHWMSLIQMVYPLFLGVFILLVVQYLRAPRPLHAAQL 172

Query: 56  TPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
               G+ ++L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL  
Sbjct: 173 IGLLGIFWMLPQTFILPFTLNIMCSQVMLMIAAAVAHEAY-------QMAFRDELTGLPG 225

Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
             A    +        I   D+D+FK+ ND  GH VGD+V+  ++ +L  V G       
Sbjct: 226 RRALNERMQRLGRNYVIAMTDVDHFKKFNDTHGHDVGDQVLRLVASRLSKVTGGGRAYRY 285

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-------------------SSGPS 215
            G EEFA    G +  E       +R++I N  +++                   S+G +
Sbjct: 286 GG-EEFALVFAGKTAAECVPHVEAVREVIANYVMHLRDQHNRPQDDTAGRQRRAGSAGGT 344

Query: 216 IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           + +TIS G+AER         ++  ADQALY AK +GRN V+ 
Sbjct: 345 VSVTISIGVAERQADHRNPEAVLKSADQALYSAKGAGRNCVMV 387


>gi|260462926|ref|ZP_05811130.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Mesorhizobium opportunistum WSM2075]
 gi|259031320|gb|EEW32592.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Mesorhizobium opportunistum WSM2075]
          Length = 894

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 84/177 (47%), Gaps = 10/177 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           E   + ++I  ++  D L+GL N +     L         Y+  +S+VF D+D FK IND
Sbjct: 454 ERKKAEDQIHFMANHDVLTGLPNRALLQDRLSQAILHAQRYDRWVSVVFIDLDNFKLIND 513

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+++  +++++V    +   + RLGG+EF        +    ++A  L+K+  
Sbjct: 514 TLGHNAGDRLLKTVAERMVGCISSTDTIVRLGGDEFVLVLSDQPKN-VDLIAETLQKLRT 572

Query: 205 NSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                +  G   +  T S GIA      +   +++  AD A+Y AK  GR+    ++
Sbjct: 573 AIAEPLQLGDHCVRATASIGIATYPKDGKAPESLVANADAAMYRAKAVGRDNFQFYA 629


>gi|144898061|emb|CAM74925.1| response regulator [Magnetospirillum gryphiswaldense MSR-1]
          Length = 312

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 8/175 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L  ++ R+ QL+ +D L+G  N   F       +          +++  D+D+FK+IN
Sbjct: 128 RDLRRAHERLQQLAALDYLTGTFNRGHFEMLVNRELERAERSGLTGALLLIDLDHFKRIN 187

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+V+  ++D  +    +   +GR+GGEEFA     +   EA  +A  L +  
Sbjct: 188 DTHGHAAGDQVLISVADAWLRELRSCDILGRVGGEEFAVFLPETGGTEATNIAARLLQRT 247

Query: 204 ENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
            +  I      ++ IT S G A        + T++  AD+ LY AK++GR+R+  
Sbjct: 248 RDLPIVWEGRQTLRITASIGGAWPVDCALDLKTLMKAADRLLYRAKQAGRDRIEI 302


>gi|153803112|ref|ZP_01957698.1| sensory box/GGDEF family protein [Vibrio cholerae MZO-3]
 gi|124121363|gb|EAY40106.1| sensory box/GGDEF family protein [Vibrio cholerae MZO-3]
          Length = 348

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 11/179 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +LS +D L+ + N   F   L           + LSI+  D+DYFK  N
Sbjct: 166 EQLEAANQELERLSFLDSLTHVANRRRFDEQLHTLWHLHVREGKPLSIILCDVDYFKDYN 225

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH +GD+ +  ++     V       V R GGEEF      + +  A ++A  + + 
Sbjct: 226 DAYGHLMGDETLKQIAIAFTQVANRHSDCVARYGGEEFGILLPNTPQSGAILVAERIHEK 285

Query: 203 IENSQINISSGPSI-HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +    I          IT+S GI       ++    ++  AD+ALY AK +GRN+   +
Sbjct: 286 VRGLAIPHDHSKVADRITVSLGIVTLIPRPEDVPEQMVELADRALYQAKANGRNQTSIY 344


>gi|170720358|ref|YP_001748046.1| diguanylate cyclase [Pseudomonas putida W619]
 gi|169758361|gb|ACA71677.1| diguanylate cyclase [Pseudomonas putida W619]
          Length = 361

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 65/233 (27%), Positives = 104/233 (44%), Gaps = 10/233 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96
           +    +  +  + L    L     L+   ++  + + +     L LG++   +  +L   
Sbjct: 117 VLRGLMAQLVGVLLASALLGTGLQLDATPLQIYACLPMLTLYPLALGWVCYRLAIKLAEH 176

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
             R+  LS  D L+GLLNH A+         +  +      I   DID+FK IND FGH 
Sbjct: 177 KRRLRDLSLTDSLTGLLNHGAWKDLLLLRFQACQNLQMPSVIALIDIDHFKTINDTFGHV 236

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD V+  +SD+L          GR GG+EF      +SE EA      LR+ I   +  
Sbjct: 237 VGDCVLRKMSDELRRNLRAGDLAGRYGGDEFCVILPDTSESEARQAMERLRERIVCYR-- 294

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
               P + I++S G++      +     + +AD+ALY AK+ GR++V    D 
Sbjct: 295 DPQLPHLKISLSIGMSSFRADLQSPEHWLEKADKALYCAKRRGRDQVNFEHDE 347


>gi|90410462|ref|ZP_01218478.1| hypothetical protein P3TCK_20925 [Photobacterium profundum 3TCK]
 gi|90328703|gb|EAS44987.1| hypothetical protein P3TCK_20925 [Photobacterium profundum 3TCK]
          Length = 1053

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 11/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           +G  + E  +  +++ +L+  D L+ L N    +  +             + +   D+D+
Sbjct: 600 TGKDITERVLFESKLHKLAHYDLLTELPNRLLLLQYIEQAITNAEEMKTSVVVFNIDLDF 659

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILAN 197
           FK+IND+ GH VGDKV+  ++ ++         + RLGG+EFA      +S Q  A LA 
Sbjct: 660 FKKINDSLGHDVGDKVLITIAKRITRSLRDEDVLARLGGDEFAILIQSDTSSQSIATLAE 719

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            +   I  S ++I    S+ IT S GIA           ++  +D ALY AK  GRNR  
Sbjct: 720 RIINNICAS-LSIEE-KSLSITASMGIAVYPENSVDSDALLKNSDIALYHAKDQGRNRYC 777

Query: 257 CFSDIE 262
            F+   
Sbjct: 778 FFTPKM 783


>gi|89900768|ref|YP_523239.1| PAS/PAC and GAF sensor-containing diguanylate
            cyclase/phosphodiesterase [Rhodoferax ferrireducens T118]
 gi|89345505|gb|ABD69708.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Rhodoferax ferrireducens T118]
          Length = 1353

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 102/227 (44%), Gaps = 20/227 (8%)

Query: 58   FYGLEYILVENLSLVIISITISLLL-------GYIS-GSILKELFISYNRISQLSRIDCL 109
            +YG  +   +N  L    +TIS +         Y++  S +  +    + +  ++  D L
Sbjct: 851  WYGEIWNRRKNGELYPEMLTISAVRTDQGQVQNYVALFSDISAIKAHQHELEHIAHFDAL 910

Query: 110  SGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
            + L N       L           + L++ + D+D FK IND  GH  GD ++  ++ ++
Sbjct: 911  TNLPNRVLLADRLQQAMAQAQRRGQMLALAYLDLDGFKAINDRHGHEAGDLLLMTVATRM 970

Query: 163  VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITIS 221
                     + R+GG+EF A  L  S+ +A+  A  L +++  +   +  G  ++ ++ S
Sbjct: 971  KQTLREGDTLARIGGDEFVAVLLDLSDSKAS--APMLSRLLAAAAEPVRLGDLALQVSAS 1028

Query: 222  AGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             G+       +     ++ +ADQA+Y AK +G+NR   F   ++ + 
Sbjct: 1029 LGVTFYPQVDEMEADQLLRQADQAMYQAKLAGKNRYHFFDAAQDRSA 1075


>gi|238758044|ref|ZP_04619225.1| Diguanylate cyclase [Yersinia aldovae ATCC 35236]
 gi|238703798|gb|EEP96334.1| Diguanylate cyclase [Yersinia aldovae ATCC 35236]
          Length = 209

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 10/192 (5%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEK 128
           I    LLG ++    K L  S   + ++S  D L+GL N   +   L         Y   
Sbjct: 20  IIYPSLLGLVTYRTAKRLAESKEELLRISVRDGLTGLYNRRHWEHQLHNQFDSCRRYQHG 79

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            +++  DID FK IND FGH VGD+ I  L+++L++       VGR GG+EF A    ++
Sbjct: 80  ATLILLDIDNFKSINDTFGHAVGDEAITILAEELLLGLRAIDIVGRYGGDEFGAILPNTT 139

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVA 247
            ++   +   ++  I   +I     PS+ + +SAGIA+  H        +  AD ALY+A
Sbjct: 140 AEQTREVLARIQ--IRLGEIIFKHAPSLQLRLSAGIADYRHDMVNYQQWLKAADAALYLA 197

Query: 248 KKSGRNRVVCFS 259
           K +GRNR+   S
Sbjct: 198 KDNGRNRIELAS 209


>gi|207727817|ref|YP_002256211.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           MolK2]
 gi|206591058|emb|CAQ56670.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           MolK2]
          Length = 953

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 10/179 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136
           Y     + E   S   +S+++  D L+GL N       L +  E+       + +++ D+
Sbjct: 773 YAFVQDVTEAKRSEMELSRMAHFDALTGLANRYELYERLRAALERRQRQPALMGVLYLDV 832

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAIL 195
           D+FK+IND +GH  GD V+  ++ +L         V RL G+EF        +  +A   
Sbjct: 833 DHFKRINDTYGHAAGDAVLVEVARRLQHTVRRTDTVARLAGDEFVILLDPIDTSDDALHT 892

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           A  +   I    I +    ++ +T S G+A           ++  AD+ALY AK  GR+
Sbjct: 893 AQKVVTAIR-PPIQLRGDIALKVTASIGVACPGLDAADADAVLREADRALYWAKSRGRD 950


>gi|121728414|ref|ZP_01681441.1| GGDEF family protein [Vibrio cholerae V52]
 gi|121629287|gb|EAX61721.1| GGDEF family protein [Vibrio cholerae V52]
          Length = 353

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 112/258 (43%), Gaps = 29/258 (11%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           IW C       F P  F I+ S  F+   + +  I    + Y          + L +  +
Sbjct: 98  IWSC-------FVPILFYIFTSARFAFVTSCLFLIIQSNIIY----------WQLQQTGA 140

Query: 71  LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAF---ISSL 122
            +  S+ + L   YI   ++  ++    R     +  L+  D L+G  N  +        
Sbjct: 141 AISWSVLLHLCFAYIGIWVVAHVYEDNRRKIENSLLYLASRDPLTGAHNRLSLTTSFQHF 200

Query: 123 GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
             +N++  L ++  D+D+FK IND FGH  GDKV+   +     V G    + R+GGEEF
Sbjct: 201 ERFNDQTSLCLLVIDLDFFKSINDQFGHDTGDKVLIETTRLFAQVVGDNN-LYRIGGEEF 259

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                  S ++A  +   LR I+            + +TIS G+ E    + ++ ++  A
Sbjct: 260 CVTLFDQSLEQAGRVCERLRAIVSQHLFAFGE-KRVQVTISIGVCEYQAGDQLNDLLKFA 318

Query: 241 DQALYVAKKSGRNRVVCF 258
           D  LY AKK+GRN+V  F
Sbjct: 319 DMELYRAKKAGRNQVRLF 336


>gi|187927101|ref|YP_001893446.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12J]
 gi|241665431|ref|YP_002983790.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12D]
 gi|187728855|gb|ACD30019.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12J]
 gi|240867458|gb|ACS65118.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12D]
          Length = 980

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 11/186 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
           G  L +       I + +  D L+GL N   F   L            +++++  D+D F
Sbjct: 527 GRDLSDRMAFEATIWKQANFDALTGLPNRQMFHERLAQEASQPGRIGRRMALMLIDLDRF 586

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILAND 198
           K++ND+ GH  GD ++     ++         V RLGG+EF        + E    +A+ 
Sbjct: 587 KEVNDSLGHDRGDTLLIEAGKRIGACVRQSDTVARLGGDEFTVILPNLDDAESVERIAST 646

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           +   +   +          ++ S G+         +  +   ADQA+Y AK +GRNR   
Sbjct: 647 IIDKLA--EPFKLGTDEAFVSASVGVTFYPDDAHDLDVLFKNADQAMYAAKNAGRNRFSY 704

Query: 258 FSDIEN 263
           F     
Sbjct: 705 FKPDMQ 710


>gi|46199699|ref|YP_005366.1| putative response regulator protein [Thermus thermophilus HB27]
 gi|46197325|gb|AAS81739.1| putative response regulator protein [Thermus thermophilus HB27]
          Length = 531

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 81/179 (45%), Gaps = 22/179 (12%)

Query: 98  NRISQ---------LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            R+ Q         ++  D L+GL N       L         Y   +S+V  DID FK 
Sbjct: 355 ERLRQVLRQAEWGAMAYTDPLTGLFNRRGLEVELPKLLALSRRYRAPVSVVMLDIDRFKA 414

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GHPVGD+V+  L   L           R GGEEF     G+  + A  +   +R+
Sbjct: 415 VNDTYGHPVGDEVLRRLGRILKQSVRKEDLAVRYGGEEFLLVLFGAEREAAKEVVERIRE 474

Query: 202 IIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              + ++   +     +T+SAGIA       +E +   I +AD AL  AK++GR+RV  
Sbjct: 475 RFRSERV---APIPYPLTLSAGIAGGEVPEGRETLEEWILKADYALLRAKETGRDRVTL 530


>gi|95928635|ref|ZP_01311382.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
 gi|95135425|gb|EAT17077.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
          Length = 301

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/189 (31%), Positives = 90/189 (47%), Gaps = 10/189 (5%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEK 128
           I  + L   IS     EL +    + QL+ +D L+ L N     S L  +          
Sbjct: 115 IGAAELFSDISDHRANELRV--KELEQLALVDKLTQLANRRYIESQLEKHLTEFRRTQLP 172

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            ++ FFDID+FKQIND +GH  GD V+ FL+  L+         GR GGEEF A      
Sbjct: 173 FAVYFFDIDHFKQINDTYGHDAGDTVLKFLAKTLIDNGRAFDIYGRWGGEEFIAIIRNLD 232

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
            +        LR ++E S +       + +T+S G     + + + ++I RAD+ LY +K
Sbjct: 233 GENLLTFGERLRMLVEQSYLKWGE-HRLAVTVSLGGTLAQNDDTLDSLIKRADRLLYTSK 291

Query: 249 KSGRNRVVC 257
           K+GRNR+  
Sbjct: 292 KNGRNRLTI 300


>gi|313682413|ref|YP_004060151.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313155273|gb|ADR33951.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 549

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/181 (34%), Positives = 86/181 (47%), Gaps = 11/181 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDI 136
            +  S + E+        +L+  D L+GL+N   F        +S     E LS++ FDI
Sbjct: 371 LVELSDITEVETQKKSFEKLAITDKLTGLINRFQFDILCAHTLNSAKRDREPLSLIMFDI 430

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK +NDNFGH +GD  +   +  +     +     R GGEEF      S   +A  LA
Sbjct: 431 DFFKNVNDNFGHNIGDITLRHTAKTIAKRLRSSDIFARWGGEEFMILLPKSGYDDAMKLA 490

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            DLR  IEN           HITIS G+A     +  ++   RAD+ALY+AK  GRN V 
Sbjct: 491 EDLRSCIENEVFEAVG----HITISFGVAVMEPNDDEASFQQRADKALYMAKNQGRNCVA 546

Query: 257 C 257
            
Sbjct: 547 F 547


>gi|262275981|ref|ZP_06053790.1| hypothetical protein VHA_002964 [Grimontia hollisae CIP 101886]
 gi|262219789|gb|EEY71105.1| hypothetical protein VHA_002964 [Grimontia hollisae CIP 101886]
          Length = 294

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 114/254 (44%), Gaps = 18/254 (7%)

Query: 22  FSPHTFMIYFSIFFSIF--IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS 79
             P  +++  +I         +++ I      Y+ +     L +   E  +L  +   + 
Sbjct: 34  LLPFVYVVLLAILPLTVKESVSLMVITAASQLYVDMQSSALLSF---ETFALYWLQTVVG 90

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIV 132
            L+ +   S L  +     R+ + + +D L+G+ N    ++           ++   S++
Sbjct: 91  FLVIWAQTSKLHMML----RLYRHATLDPLTGIYNRRMLLTLAKRDFENTRIHSRPYSVL 146

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D FK+IND +GH  GD V+   +  +          GR GGEEF       SE  A
Sbjct: 147 LMDLDKFKRINDRYGHHAGDLVLQAFTHAVQETQRKSDIFGRFGGEEFILFLPKCSEDNA 206

Query: 193 AILANDLRKIIENSQINISS-GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKS 250
            ++A+ +   + + +I +      + +T S GI+  R   + +S+I+ +ADQALY+AK +
Sbjct: 207 QLVADRIMTRVRDMEIKVEGLSNPLKVTTSIGISTSRNQNDDLSSILTQADQALYIAKNA 266

Query: 251 GRNRVVCFSDIENN 264
           GR+R   + + +  
Sbjct: 267 GRDRSHAYDNHQQQ 280


>gi|258514934|ref|YP_003191156.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778639|gb|ACV62533.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 1021

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 7/176 (3%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFK 140
           G  +        ++  L+  D L+ + N  +    L  +           ++  D+D FK
Sbjct: 585 GRDITNRKRFEQKLQYLASHDPLTNISNRYSLEEYLTRFVAKAKLGRTGVLLLIDLDNFK 644

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GH  GD+V+  L + L +      F+ R GG+EF      ++  EA ++A  LR
Sbjct: 645 MVNDTYGHAAGDEVLIALVNTLRLNLREEDFIARFGGDEFVVLLDNTTVAEAMLIAEKLR 704

Query: 201 KIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             ++N+   + +  +  ++TIS G       +    ++   D ALYVAK+SGRN +
Sbjct: 705 NAVDNNAFCLCTFKTCFNLTISIGAVLIDGNQDAQKLLSIVDAALYVAKESGRNSI 760


>gi|187927638|ref|YP_001898125.1| diguanylate cyclase [Ralstonia pickettii 12J]
 gi|187724528|gb|ACD25693.1| diguanylate cyclase [Ralstonia pickettii 12J]
          Length = 585

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 9/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
            +  E       +S+++  D L+ LLN  AF    G+  +        ++++ FDID+FK
Sbjct: 393 RLEVERAHLMQELSRMAETDPLTQLLNRRAFEDRAGAMCKSPQPKARLIALIMFDIDHFK 452

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH VGD+ +  ++        +   V R+GGEEFA      S  +A  +A+ LR
Sbjct: 453 RINDTYGHAVGDEALRTVARLCRSEGPSADMVARIGGEEFAVMVWADSLAQARAVADHLR 512

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
             I    +   +     +T S G+A     +   +  ++ RAD  LY AK +GRN V+ 
Sbjct: 513 HRIAEVTVPTGTDLPCSMTASFGVAAAPAADGPELEPLLRRADHLLYAAKLAGRNCVMA 571


>gi|254517294|ref|ZP_05129351.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC sensor(s) [gamma
            proteobacterium NOR5-3]
 gi|219674132|gb|EED30501.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC sensor(s) [gamma
            proteobacterium NOR5-3]
          Length = 1521

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 15/200 (7%)

Query: 79   SLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLS 130
            S +LGY  +   + E+         L+  D L+ L N       L           +  +
Sbjct: 1067 SKILGYRGTMRDVDEVHKLEKEARDLAFKDPLTNLPNRRMIAVKLDEARTVSNRTYQYGA 1126

Query: 131  IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
            +V  DID+FK++ND  GH VGD+++  ++ +L     +   V R+GG+EF        + 
Sbjct: 1127 LVMLDIDHFKRVNDTDGHGVGDELLVEVAARLRQRLRSFDTVARVGGDEFLMILNALGQD 1186

Query: 191  E------AAILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQA 243
            +      A+ + N++R  I + Q    +  S H+T S G+A     KE   T++ +AD A
Sbjct: 1187 QMEASLTASRICNEIRADISSEQNLTGASTSHHVTGSFGVALFVGDKETAETLLKQADMA 1246

Query: 244  LYVAKKSGRNRVVCFSDIEN 263
            LY AK +GRNRV  F     
Sbjct: 1247 LYSAKDNGRNRVKLFDPKMQ 1266


>gi|254507474|ref|ZP_05119608.1| sensory box/ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219549544|gb|EED26535.1| sensory box/ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 589

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 18/192 (9%)

Query: 84  YISGSILKELFISYNRIS-------QLSRIDCLSGLLNHSAFISSLG-------SYNEKL 129
            I    + E +++  R+        +LS ID L+ + N   F   L           + L
Sbjct: 392 LIMARDVSERYLAEQRLEEANLELERLSFIDGLTQISNRRRFDEQLKTLWSLHIREKQPL 451

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSS 188
           +++  DIDYFK  ND +GH  GD+V+  +++     +  +   V R GGEEF      ++
Sbjct: 452 TVMLCDIDYFKGFNDYYGHLRGDEVLIKVAEVFERALPRSSDCVARYGGEEFGFILPNTT 511

Query: 189 EQEAAILANDLRK-IIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALY 245
            + A  +A  + + +IE +  + +S  S  +T S G+        +   TI+  AD ALY
Sbjct: 512 VEGAIKVAERIHQGVIELAIEHKASQVSSVVTASIGLVSIVPQPHDRSDTIVALADSALY 571

Query: 246 VAKKSGRNRVVC 257
            AK +GRN+   
Sbjct: 572 QAKANGRNQTCV 583


>gi|172039491|ref|YP_001805992.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700945|gb|ACB53926.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 335

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 25/190 (13%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           EL  +Y  + +++  D L+G+ N  +              YN   S++  D+D FK IND
Sbjct: 137 ELKKAYEEMKRIAATDELTGIPNRRSIFSLGKQEFERSQRYNSSFSLLIIDVDKFKTIND 196

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMF----------------VGRLGGEEFAAAALGSS 188
            +GH +GD+ +  +    +       +                +GRLGGEEF      ++
Sbjct: 197 TYGHDIGDEALKMMVKITLNCLRKVDYIGRLETEEEALAKKGHLGRLGGEEFVVILPHTN 256

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVA 247
            + A   A  + + +    + +    ++ IT+S GIA    K+  +  I+ RAD AL+ A
Sbjct: 257 LKGAYKAAQRVCEAMTKETLQVED-KTVSITVSIGIATYDSKDQKMEDILKRADLALFAA 315

Query: 248 KKSGRNRVVC 257
           K++GRNRV  
Sbjct: 316 KENGRNRVAI 325


>gi|157375214|ref|YP_001473814.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157317588|gb|ABV36686.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 343

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 81/174 (46%), Gaps = 10/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDN 145
           L      ++ L+  D L+ L N  AF          L    E   ++  DID+FKQ NDN
Sbjct: 168 LKSEMESLNVLALTDQLTSLHNRRAFEEEVLIHMQRLTKTQESSCLLVIDIDHFKQFNDN 227

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH +GDKV+ +++  L        FV R GGEEF      +   +A I+A  LR  I +
Sbjct: 228 HGHVIGDKVLTYIALALNQAVKGSDFVARYGGEEFVVLLPDTELADALIVAEQLRSKIAD 287

Query: 206 SQINISSGPSI---HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            ++ +     +    IT+S G A     +   +   RAD+ALY AK  GRN V 
Sbjct: 288 RKLTVGKDKKLSLGSITVSIGAATLNISDDRESYFVRADEALYRAKSCGRNCVR 341


>gi|94971157|ref|YP_593205.1| diguanylate cyclase [Candidatus Koribacter versatilis Ellin345]
 gi|94553207|gb|ABF43131.1| diguanylate cyclase [Candidatus Koribacter versatilis Ellin345]
          Length = 369

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 11/192 (5%)

Query: 81  LLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           L   ++     +L   Y    + + +  D L+GL     F   L             +++
Sbjct: 170 LFWMLTLVAENQLTRDYENEGLIKFAFTDFLTGLKTRGYFEQQLELEIKRAERKRTPIAM 229

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  D+D+FK +ND +GH VGD+V+  +S  L+          R GGEEF      ++   
Sbjct: 230 LMLDLDHFKTLNDTYGHHVGDQVLRDVSAVLMKDLREVDTAARYGGEEFVIVLPETNTTG 289

Query: 192 AAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHK-EPISTIIYRADQALYVAKK 249
           A  +AN +R+ +E ++    S   +  +TIS GIA      +    +I  AD ALY AK 
Sbjct: 290 AMQVANRIRRGVEQAKFFAGSPRQVERLTISIGIAIYDQDAQSKRELIEAADAALYQAKG 349

Query: 250 SGRNRVVCFSDI 261
            GRN+VV  +++
Sbjct: 350 QGRNQVVTHAEL 361


>gi|37676066|ref|NP_936462.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37200606|dbj|BAC96432.1| GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 387

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 111/242 (45%), Gaps = 15/242 (6%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV--IISITISLLLGYIS 86
           +   +  + F+   +++  +F  Y+       ++++   ++  +  +  I + L LG+  
Sbjct: 152 LAIGLLLAAFVTLALWM--LFRTYVTHMSSQIVDFMFASSIHQLSFLALIMLILTLGFTF 209

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139
             ++    I+   I Q S  D L+ + N  A                 +LSI+  D+D+F
Sbjct: 210 PWMINARLITN--IYQTSLRDTLTNIYNRRAMEEMIPRELSRASRLGAELSIIILDLDHF 267

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND +GH VGD+ ++ +   L           R+GGEEF      +  + A ++A  L
Sbjct: 268 KRINDQYGHQVGDQTLSGIGQLLTSQLRKQDISFRIGGEEFLVVLPDTPIESAVLVAEKL 327

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           R+ I  ++       +   T S G+A+    +    ++ RAD ALY+AK  GRNRV   S
Sbjct: 328 RQKIAETRFAPKQRETW--TASFGVAQLITGDDWDALMKRADAALYLAKHKGRNRVCEVS 385

Query: 260 DI 261
           D+
Sbjct: 386 DV 387


>gi|114561735|ref|YP_749248.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114333028|gb|ABI70410.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 488

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/218 (27%), Positives = 93/218 (42%), Gaps = 24/218 (11%)

Query: 59  YGLEYILVENLSLVIISITISLL-------LGYISGSILKELFISYNR----ISQLSRID 107
           Y L   +V  L + I+ +    +           S   L++L +   +    +  L++ D
Sbjct: 273 YSLVVQVVTALGMFILFLLYRTMCVSKYNVHLETSNKQLQKLQLELEKKNCDLDFLAQHD 332

Query: 108 CLSGLLNHSAFISS-LGSYNEK--------LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            L+ L N   F  + L    +         +S++  DID+FK IND  GH +GDK++  +
Sbjct: 333 PLTKLYNRQYFNQTFLDDARQPQKKMRQNNMSLIIIDIDFFKAINDKHGHTIGDKILVQV 392

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R GGEEF       +  +A  L   +   + +         +I +
Sbjct: 393 AQVLQASVRELDVVARWGGEEFVVVCQHVALHDATELCQRITDELSHFHFY----HNIKV 448

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           T S GIA     EPI     RAD ALY AK+SGRN+  
Sbjct: 449 TCSFGIALLGENEPIQACFERADAALYKAKQSGRNQYC 486


>gi|228903893|ref|ZP_04068008.1| GGDEF domain protein [Bacillus thuringiensis IBL 4222]
 gi|228968547|ref|ZP_04129534.1| GGDEF domain protein [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228791151|gb|EEM38766.1| GGDEF domain protein [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228855802|gb|EEN00347.1| GGDEF domain protein [Bacillus thuringiensis IBL 4222]
          Length = 352

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 9/214 (4%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           ++  I +   Y      +  + L +IS  I+  + +IS + + +    +  + Q + +D 
Sbjct: 137 YILSILIPSLYIWLIKDINIVGLYLISSIITGYITFISANYVLQSNELFQTMKQYATVDA 196

Query: 109 LSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GL N   F   +  +       N+ L ++  DID+FK +ND +GHP GD+V+  +   
Sbjct: 197 LTGLGNVRQFDLEMNRHISNKNMKNDSLCLLLIDIDHFKYVNDTYGHPAGDEVLKQVGCI 256

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L      P    R GGEEFA             +   +R  +E+    +  G  I IT+S
Sbjct: 257 LRETSQFPDLAFRKGGEEFALLIPNKGLAYGIRMGEQIRIAVESHPFQLLDGTKIKITVS 316

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G++E   +      I  AD ALY +K++GRN+V
Sbjct: 317 VGVSEY--EGSSEQFIQAADDALYYSKRNGRNKV 348


>gi|209808967|ref|YP_002264505.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238]
 gi|208010529|emb|CAQ80897.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238]
          Length = 482

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 70/216 (32%), Positives = 104/216 (48%), Gaps = 20/216 (9%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYI--SGSILKELFISYNRISQLSRIDCL 109
           Y   TP Y         +++ I+S+ + LL  +I  +    + L       S+L+  D L
Sbjct: 276 YYWFTPLY---------ITIFIVSMLMILLSFFIFKNAYYFQTLIYQAEHYSKLALYDEL 326

Query: 110 SGLLNHSAFISS----LGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +G+ N   F       L  Y +K    S+V FDID+FK IND +GH  GD+V+   S   
Sbjct: 327 TGVCNRRCFEKVMSSFLEEYKQKGVVFSLVIFDIDFFKDINDTYGHDRGDEVLRVFSKTC 386

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             V        RLGG+EF       + QEAA++  +L   I    +  S G  + I+ S 
Sbjct: 387 SSVMSPEDIFARLGGDEFVMIMANKTSQEAALIMTELLHQIRRLSVMTSKG-ELKISSSI 445

Query: 223 GIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           GI + +   +  S ++ RAD+ALY  K+SGRN VV 
Sbjct: 446 GITQMKTKNDDFSVLLERADKALYQVKRSGRNGVVV 481


>gi|157693778|ref|YP_001488240.1| diguanylate cyclase [Bacillus pumilus SAFR-032]
 gi|157682536|gb|ABV63680.1| possible diguanylate cyclase [Bacillus pumilus SAFR-032]
          Length = 529

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 6/176 (3%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFK 140
           I  S + E  +    + + + ID L+ + N S+FI      L    +  +++ FDID+FK
Sbjct: 341 IVISDVTEQRLLQEELERRAYIDGLTNIFNRSSFIERTQMILEEDAQDTAVMLFDIDFFK 400

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           QIND  GH +GD+ +  +              GR GGEEFA      S +EA  +A  +R
Sbjct: 401 QINDTHGHHIGDEALRHVVTICQQHLQMDDLFGRYGGEEFAICLPHHSFEEACHIAERIR 460

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255
              E      +    + +T S GIA   +    + T+++ ADQALY++K+ GRNR+
Sbjct: 461 HSFE-MSFFENEEEKVRVTASFGIAHTAYDPNVLETLLFEADQALYMSKRQGRNRI 515


>gi|297537357|ref|YP_003673126.1| diguanylate cyclase [Methylotenera sp. 301]
 gi|297256704|gb|ADI28549.1| diguanylate cyclase [Methylotenera sp. 301]
          Length = 602

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 93/174 (53%), Gaps = 8/174 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           + EL    + IS+++  D L+G LN      ++    E+       LS+   DID+FK+I
Sbjct: 425 INELTTKLDYISEVAHEDFLTGALNRRGMDEAIEREFERADRHSTALSLAMIDIDHFKKI 484

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD  +A L+  +  +  +   + R GGEEF     GS + +A  +   +++ 
Sbjct: 485 NDTMGHSTGDVALAHLAKVVKSILRSTDVLARYGGEEFVILLPGSKQDDAVNVIAGVQRD 544

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +      + +   + IT SAG+AER   E +  ++ RAD ALY+AK++GRNRVV
Sbjct: 545 L-TKNFFMHNSERVLITFSAGVAERMTGESVDAVLPRADAALYLAKQTGRNRVV 597


>gi|291613347|ref|YP_003523504.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291583459|gb|ADE11117.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 927

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           + + E       I + +  D L+ L N   F   L    +K       ++++  D+D FK
Sbjct: 486 TDITERKKVEELIWRQANYDSLTKLPNRQMFHDRLEQEAKKAHRAGLSMALLLIDLDRFK 545

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           ++ND  GH  GD ++   + ++         V RLGG+EF               +A D+
Sbjct: 546 EVNDTLGHDKGDILLIEAARRISACVRESDTVARLGGDEFIVILSELEDMASIDRVAQDI 605

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
              +      + + P+ +I+ S GI+   +    +  +   ADQA+YVAK +GRNR   F
Sbjct: 606 LGSLAE-PFKLDAEPA-YISASIGISLYPNDATELDVLFKHADQAMYVAKYAGRNRFNYF 663

Query: 259 SDIENNTC 266
           +       
Sbjct: 664 TKDMQEAA 671


>gi|59713338|ref|YP_206113.1| GGDEF domain-containing protein [Vibrio fischeri ES114]
 gi|59481586|gb|AAW87225.1| GGDEF domain protein [Vibrio fischeri ES114]
          Length = 482

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 11/200 (5%)

Query: 68  NLSLVIISITISLLLGYISGSI--LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS- 124
           +LSL+ +    ++++G +  ++  LK+     ++ S+L+  D L+G+ N  AF       
Sbjct: 282 SLSLMAVIGCFAVIIGLLLFNLNYLKKTRAQKDKYSELAYNDYLTGVNNRRAFEKQANKV 341

Query: 125 ------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                   +  S++  DID FK+ ND FGH VGD++I   S+           V RLGG+
Sbjct: 342 FKTYQNDKQVFSLIMCDIDNFKEYNDKFGHDVGDQMITAFSEACSAQINQDDIVARLGGD 401

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTII 237
           EF        +++A ++A  L+ +I +  + +     + +T S G+A        +  ++
Sbjct: 402 EFIVLLHHKDKEQAVMVAESLQNVIRDLSV-LVDDQELSMTCSMGVATVSELTTSLHELL 460

Query: 238 YRADQALYVAKKSGRNRVVC 257
             AD  LY AK++GRN V  
Sbjct: 461 NIADTQLYKAKEAGRNCVRF 480


>gi|42525094|ref|NP_970474.1| hypothetical protein Bd3766 [Bdellovibrio bacteriovorus HD100]
 gi|39577305|emb|CAE81128.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
          Length = 627

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 12/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           ++++  +  R+ +L+  D L+ + N    +              + +S+V FDID+FK+I
Sbjct: 448 IRQVRTA-RRMRELAMTDELTRIPNRRHVLEYAQQSISTCQRQGKSMSVVIFDIDHFKRI 506

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH VGD+VI  +++   +       +GR+GGEEF      +    A  +A  LR+ 
Sbjct: 507 NDTFGHAVGDEVIKRVAEIGKMALRKGDMIGRIGGEEFLLILPFTEPLPAKEVAERLRRE 566

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRV 255
           I          P++ +T+SAG++     +    I ++I +AD+ALY  K++GRN V
Sbjct: 567 ISLYDFT-DLAPNLTVTVSAGVSCYTATDKQGHIDSLIQQADEALYSVKQNGRNGV 621


>gi|83749334|ref|ZP_00946331.1| Hypothetical Protein RRSL_01002 [Ralstonia solanacearum UW551]
 gi|83724012|gb|EAP71193.1| Hypothetical Protein RRSL_01002 [Ralstonia solanacearum UW551]
          Length = 732

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/281 (22%), Positives = 114/281 (40%), Gaps = 25/281 (8%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY- 63
           L    ++W+      +S          ++   + I  + +       +  L  F G    
Sbjct: 182 LASGAALWIAFRLRRQSRRVRAMRAGAAVVMGLAIVGMHYTGMAAAGF-PLGSFCGAARG 240

Query: 64  -ILVENLSLVIISITISLLLGYISGSIL------------KELFISYNRISQLSRIDCLS 110
            + VE L+LVII +T+++L   +  S+L              L  +   ++ L+  D L+
Sbjct: 241 GVSVEWLALVIIVVTLAVLAMALVISVLDLRMEARTAVLATSLAKANKELAYLALHDSLT 300

Query: 111 GLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            L N       L              +++F D+D FK +ND +GH  GD ++A ++ ++V
Sbjct: 301 KLSNRLLLEDRLEQAIRSAGRNRGSFALMFLDLDGFKAVNDVYGHHAGDLLLADVARRIV 360

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   V R+GG+EF   A      +A  LA+    +    +  +  G ++ ++ S G
Sbjct: 361 ACVRLQDTVARVGGDEFVVLASVGEPADAGTLADA--LLAAAREPFLVDGHALRVSTSIG 418

Query: 224 IAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           IA           ++  AD A+Y AK +GR+    F    N
Sbjct: 419 IALYPGDGASQHDLLTNADAAMYHAKGTGRDTYCFFEASMN 459


>gi|329890340|ref|ZP_08268683.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328845641|gb|EGF95205.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 609

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 77/170 (45%), Gaps = 9/170 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
              + + +  D L+GL N      +L             L +V  D+D+FK+ ND FGH 
Sbjct: 434 QRDLKEQTIRDPLTGLFNRRYMEEALALEVARAARSGAPLCVVMCDVDHFKRFNDEFGHE 493

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++ +L   F     V R GGEEF   A G+  +  A     +R+ I    + 
Sbjct: 494 AGDVVLQAVAAELGHRFRDGDIVCRYGGEEFIVIAPGTKAETLAPRVETVRQAIAAIALR 553

Query: 210 ISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
           +   P    T+S G+AE           ++  AD ALY AKK GRNRVV 
Sbjct: 554 LGKQPLGSSTMSFGVAEWSKGMNRDGDALVQAADAALYRAKKEGRNRVVL 603


>gi|318606059|emb|CBY27557.1| hypothetical protein Y11_06241 [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 693

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 8/179 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDI 136
             +    +         +   +  D L+GL+N       L     +L       + + D+
Sbjct: 511 AVVVFQDVTRARHEQRELQYQANHDMLTGLINRRRLEERLNQAISQLGQDEQHILCYVDL 570

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK +ND+ GH  GD V+  ++  +         V RLGG+EFA        + A  + 
Sbjct: 571 DYFKDVNDSAGHEAGDMVLRMVAQTMQQAVRENDIVARLGGDEFAIVLFNCQHKPATEVL 630

Query: 197 NDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +   I + Q +   G S   T S G ++     E  +  + +AD A Y AK +GRNR
Sbjct: 631 ERVVADIASIQFHWH-GQSYSFTASLGAVSLNRQTETAAQAMRQADIACYAAKHAGRNR 688


>gi|332160849|ref|YP_004297426.1| diguanylate cyclase/phosphodiesterase domain-containing protein
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|318604751|emb|CBY26249.1| hmst protein [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325665079|gb|ADZ41723.1| diguanylate cyclase/phosphodiesterase domain-containing protein
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|330863378|emb|CBX73500.1| protein adrA [Yersinia enterocolitica W22703]
          Length = 300

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 106/228 (46%), Gaps = 10/228 (4%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR 99
              + IA   L        +  E   ++  + + + I    LLG ++    K L  +   
Sbjct: 75  GLALQIACSLLTAWIFNLPFKPETSPLQVYACLPMIIIYPSLLGLVTYRTAKRLAENKEE 134

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + ++S  D L+GL N   +   L         Y    +++  DID FK IND FGH VGD
Sbjct: 135 LLRISVRDGLTGLYNRRHWEHQLHNQFDSCRRYQHGATLILLDIDNFKSINDTFGHAVGD 194

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + I  L+++L++       VGR GG+EF A    ++ ++   +   +++ + +     + 
Sbjct: 195 EAITVLAEELLLGLRAIDIVGRYGGDEFGAILPNTTAEQTREVLMRIQERLADLVF--TQ 252

Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            P + + +SAGIA+  H        +  AD ALY+AK +GRNR+   S
Sbjct: 253 APPLQLRVSAGIADYRHDMINYQQWLKAADSALYLAKDNGRNRIELAS 300


>gi|301029412|ref|ZP_07192506.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
 gi|299877716|gb|EFI85927.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
          Length = 251

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 97/202 (48%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 49  LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 108

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 109 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 168

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++               
Sbjct: 169 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQFQS 228

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRNRV   SD
Sbjct: 229 LADRRLYLAKQAGRNRV-FASD 249


>gi|288553530|ref|YP_003425465.1| sensory box/GGDEF protein [Bacillus pseudofirmus OF4]
 gi|288544690|gb|ADC48573.1| sensory box/GGDEF protein [Bacillus pseudofirmus OF4]
          Length = 573

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 11/174 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFG 147
              + + +L+  D L+ L N   F++ L        S  EKL+++F D+D FK +ND  G
Sbjct: 137 EQQDEVYRLANEDPLTNLPNRRCFMNYLENKLLHAASSKEKLAVLFIDLDRFKYVNDTLG 196

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENS 206
           H  GD+V+  ++++L         + RLGG+EF        E +E   L  DL  II   
Sbjct: 197 HLFGDRVLKHIAERLQAHLPEKSMIARLGGDEFVVVMTDVKEKEEPVSLTEDLLTIIREP 256

Query: 207 QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            I    G    +T S GIA           ++  AD A+Y AK  G +R+  ++
Sbjct: 257 LIM--DGFEFTLTGSVGIALSPENGIDAEALLTSADAAMYRAKAKGSDRLEVYN 308


>gi|326314856|ref|YP_004232528.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323371692|gb|ADX43961.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 1499

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 79/192 (41%), Gaps = 17/192 (8%)

Query: 87   GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
             + + +   +   I +L+  D L+GL N    +  +           +  +++F D+D F
Sbjct: 1047 NTDIGQRKATEREIQRLAFYDSLTGLPNRMLLMDRMRHALATAQRRRQGGALLFIDLDNF 1106

Query: 140  KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ------EAA 193
            K +ND  GH  GD ++  ++ +L     +   V RLGG+EF     G S         A 
Sbjct: 1107 KTLNDTLGHDQGDVLLQQVAARLNTCVRSVDTVARLGGDEFVVMIEGLSPHPDDLALSAR 1166

Query: 194  ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSG 251
             +   +  ++      +  G     T S G+A         +  ++ +AD A+Y AK +G
Sbjct: 1167 TVGEKILAVLAT--PYVLQGYHYRSTPSIGVAPFGDGRASTVGELLKQADLAMYQAKTAG 1224

Query: 252  RNRVVCFSDIEN 263
            RN +  F     
Sbjct: 1225 RNTLRFFDPGMQ 1236


>gi|209525878|ref|ZP_03274413.1| diguanylate cyclase with PAS/PAC and Chase2 sensors [Arthrospira
           maxima CS-328]
 gi|209493687|gb|EDZ94007.1| diguanylate cyclase with PAS/PAC and Chase2 sensors [Arthrospira
           maxima CS-328]
          Length = 729

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 11/177 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKL-SIVFFDIDYFK 140
            + ++L      + Q +  D L+GL N   F   L         N+K   + F D++ FK
Sbjct: 542 QLAEQLEKYNAELQQRADHDPLTGLPNRQLFEERLTQALIWADTNQKFVGLFFLDLNNFK 601

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
            IND +GH VGD V+  ++++L         V RLGG+EF     G  S  +A  +A  +
Sbjct: 602 PINDQYGHHVGDLVLKLVAERLRGCLRASDTVSRLGGDEFTIILPGIPSHADAVRVAEKI 661

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
              +  +Q +      I I +S GI+      +   T++ +AD A+Y AK   +N  
Sbjct: 662 LDQV--TQESELDSHVITIGLSIGISLYPLDSQDYETLVQKADAAMYRAKSRHQNSY 716


>gi|118588681|ref|ZP_01546089.1| sensory box/GGDEF domain/EAL domain protein [Stappia aggregata IAM
           12614]
 gi|118438667|gb|EAV45300.1| sensory box/GGDEF domain/EAL domain protein [Stappia aggregata IAM
           12614]
          Length = 489

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 11/175 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           + + +  L  +   + +L+  D L+GL N + F  SL          N K +++  D+D 
Sbjct: 302 THTDITRLKKTEEAVRRLAMTDHLTGLSNRAHFSQSLAESIAIADRENRKFALMMLDLDT 361

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILAN 197
           FK +ND  GHPVGD ++  ++  +         V R+GG+EFA      + E++    A 
Sbjct: 362 FKPVNDRHGHPVGDALLQVVASTIKRCTRDGDVVTRIGGDEFAVIISDYAQEKDVLACAE 421

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSG 251
            + +  E S+     G  I+I IS G++      +   ++I  ADQA+Y AKKSG
Sbjct: 422 RIYR--EVSRPMDIKGNQINIGISIGVSFYPDDADDAKSLITHADQAMYEAKKSG 474


>gi|77457479|ref|YP_346984.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens
           Pf0-1]
 gi|77381482|gb|ABA72995.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens
           Pf0-1]
          Length = 760

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/292 (21%), Positives = 116/292 (39%), Gaps = 36/292 (12%)

Query: 7   DFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILV 66
            F ++W+       S      + Y +    I  A ++ +    +  + L    G    L 
Sbjct: 172 SFAALWVAGYLREGSGLHIQMLKYVAAL--ILGAGILSMHFTGMAALQLVLPEGQLPTLA 229

Query: 67  ENLSLVIISITISLLLGYISGS-----------------------ILKELFISYNRISQL 103
              S + + +T++L+   I GS                       +L +L  +   +  +
Sbjct: 230 SQTSHLQLGLTVALITLLILGSAISAALADKKLQNKEHDLRRVNALLSQLDQARMSLQHV 289

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  D L+ L+N   F         +       L+++F DID+FK+IND+ GH  GD+++ 
Sbjct: 290 ANYDALTNLINRRGFNQIFAEKLSQKTSEGGMLAVMFLDIDHFKRINDSLGHDAGDELLK 349

Query: 157 FLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
            ++  +     +    V R GG+EF         +EA  LA  +  +++  +    +G  
Sbjct: 350 VIAQHIKGSVRSHEDVVARFGGDEFCILIGLRDREEARNLAQRI--MLKMKEPIELAGRR 407

Query: 216 IHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           + +T S GI+           ++  AD ALY +K +GRN V  F     N  
Sbjct: 408 MVMTTSIGISLFPEDGSTCDELLKHADLALYQSKGAGRNGVHFFDSNLKNRA 459


>gi|58582237|ref|YP_201253.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84624130|ref|YP_451502.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188576798|ref|YP_001913727.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188576990|ref|YP_001913919.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|58426831|gb|AAW75868.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368070|dbj|BAE69228.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188521250|gb|ACD59195.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188521442|gb|ACD59387.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 990

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 10/172 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L  +   +S  +  D L+GLLN +  +++L             L++V  D+D+FK +N
Sbjct: 800 RDLEAARAELSLKATHDELTGLLNRAGILAALREMLLHAARSGRPLAVVLIDLDHFKLVN 859

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD V+A +  ++  +      +GR GGEE  A   G +      L    R I 
Sbjct: 860 DQHGHLAGDAVLAGVGHRMDTLVRGDDRIGRYGGEELLALLPGLTPGATHRLDAMHRGIC 919

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  +       +H+T S G+A     E +  ++ RAD ALY AK+SGRNR+
Sbjct: 920 GDYPV---DDGWLHVTCSIGVAWFQAGETLEQLLARADAALYRAKRSGRNRI 968


>gi|303245877|ref|ZP_07332159.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           fructosovorans JJ]
 gi|302492660|gb|EFL52528.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           fructosovorans JJ]
          Length = 357

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 11/182 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + E   +   I+++S  D L+GL N   F+  L          +E+ ++ F D+D FK 
Sbjct: 158 DITERRRAEALITRMSLHDGLTGLPNRVLFMDRLRQTLRLAERSHERAAVYFIDLDRFKG 217

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND FGH  GDKV+   + +L         V RLGG+EF A          A ++A  + 
Sbjct: 218 VNDAFGHETGDKVLQETARRLAGCVRRSDTVARLGGDEFVALTPAVGDADHAGVIAAKMV 277

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++   +    SG    +  S G+A           ++ RAD A+Y AK +GRN      
Sbjct: 278 AVLR--KPFSVSGHDCQLGGSVGVALYPEDGVRAGELVRRADAAMYAAKNAGRNAWRMAQ 335

Query: 260 DI 261
           D 
Sbjct: 336 DA 337


>gi|296158019|ref|ZP_06840852.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. Ch1-1]
 gi|295891787|gb|EFG71572.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. Ch1-1]
          Length = 777

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 15/227 (6%)

Query: 38  FIA-TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96
           F+A + +F A  +    G    + +E  +V  + +V I +  S +  +      +  F+ 
Sbjct: 134 FVAGSALFYATAYALLFGEPLTHDVE--IVVWMWVVAIGVPTSAVFHFGFYRFRRNHFLL 191

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPV 150
            ++++QL+  D L+GL N  +F+              ++S +F DID FK +ND FGH V
Sbjct: 192 ESQLAQLAATDPLTGLQNRRSFVKHAERRLDTLAPETRISAIFLDIDNFKSLNDRFGHAV 251

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD  +  ++  L+        V R+GGEEFA          A  LA  LR  I   +   
Sbjct: 252 GDHALYEVAHALMEEASADDSVSRIGGEEFALLLCD-GLTGALHLAERLRLAIAAIER-- 308

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              P   +T S G+AE    E I  ++ RAD+AL  AK SGRNRV  
Sbjct: 309 ---PDGQLTASFGVAEHRSGESIMMLLDRADEALLRAKHSGRNRVCA 352


>gi|317049538|ref|YP_004117186.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pantoea sp. At-9b]
 gi|316951155|gb|ADU70630.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pantoea sp. At-9b]
          Length = 949

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
            + +   +  RI  ++  D L+ L N   F   L              + +  D+D FK 
Sbjct: 515 DVTDQREADARIHHMAHHDNLTSLPNRILFRQKLSEALRADTQGGYITATLCLDLDNFKN 574

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND  GH +GD ++  ++ +L  V      + R+GG+EFA       +  EAA++A  L 
Sbjct: 575 VNDALGHQIGDDLLRTVAKRLRNVLRDHDTLARIGGDEFAIVLPNIRNADEAAVVAQRLI 634

Query: 201 KIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + I         G ++ + +S GIA           ++  AD ALY AK++GRNR   F+
Sbjct: 635 EAIR--PPVNLEGHNLSVGLSVGIALSSQAANTPEHMLRCADMALYEAKRNGRNRYEHFT 692

Query: 260 DIENNTC 266
              ++  
Sbjct: 693 LEMDDLA 699


>gi|220905630|ref|YP_002480942.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869929|gb|ACL50264.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 554

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/215 (28%), Positives = 101/215 (46%), Gaps = 25/215 (11%)

Query: 65  LVENLSLVIISITISL---LLGYISGSILK-------------ELFISYNRISQLSRIDC 108
           ++  ++L+   + I     L G ++G ILK             +L  +Y  + +++  D 
Sbjct: 331 IISIMALLYAVLMIFFERHLTGMVNGFILKLKDDETALREEKNKLDDAYKELERVAYYDF 390

Query: 109 LSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GLLN  A    L            +  +V  DID+FK +ND +GH  GD V+  +++ 
Sbjct: 391 LTGLLNRRAMYERLEKEFSRAQREGLQFCLVLADIDHFKVVNDTYGHDAGDVVLQSIAEI 450

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                       R GGEEF   A+    ++   LA  LRK +E++ I I +   I++TI+
Sbjct: 451 FQNNIRQEDCASRWGGEEFLILAISCGLEDGLSLAEKLRKAVEDTPIRIGAAI-INVTIT 509

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ E    +  ST+I  AD  LY  K+  RN V+
Sbjct: 510 LGVVEYTKGKSFSTLIKEADFYLYEGKRQ-RNCVM 543


>gi|167034559|ref|YP_001669790.1| diguanylate cyclase [Pseudomonas putida GB-1]
 gi|166861047|gb|ABY99454.1| diguanylate cyclase [Pseudomonas putida GB-1]
          Length = 386

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 10/195 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGS 124
           + ++I  + ++ Y  G +L     S +R+  L+  D L+G  N  A +            
Sbjct: 186 ISVAIGTATVMMYSIGLVLLAKERSESRLQHLALRDVLTGTYNRRAILERFGVELDRARD 245

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
               L++   DID+FK+IND +GH  GD+V+     QL         +GR GGEEF    
Sbjct: 246 QQGSLAVAMIDIDHFKRINDLYGHLAGDEVLCHCVRQLQQRLRQGDSLGRYGGEEFLLLL 305

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQ 242
            G+    A      LR+ I  S     +G  I +  S G+     C  +  ++++ +AD 
Sbjct: 306 PGTDRTGAMAALQGLREAIARSPARF-AGDQIELRFSVGLWCGVPCPGDSTASLLAQADA 364

Query: 243 ALYVAKKSGRNRVVC 257
           ALY AK +GRN V  
Sbjct: 365 ALYQAKAAGRNTVHM 379


>gi|90418866|ref|ZP_01226777.1| putative sensory protein, diguanylate cyclase [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336946|gb|EAS50651.1| putative sensory protein, diguanylate cyclase [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 632

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 12/177 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           +R S L+  D L+ L N S F   L          +  ++++  D+D+FK++ND  GH  
Sbjct: 175 DRASFLASHDPLTQLPNRSLFNEWLVRSVADVDRQDGSMAVLCLDLDHFKEVNDLLGHAA 234

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQIN 209
           GD+++  +++++         + RLGG+EFA      +    +A LA  L +  E S+  
Sbjct: 235 GDELLRQVTERMTATLRRYDILARLGGDEFAIIQKHFAQPAGSARLAERLIE--ELSKPF 292

Query: 210 ISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSDIENN 264
              G  + I +S G+A R   E      ++ +AD A+Y AK  GR     F D  N+
Sbjct: 293 DLKGNEVLIGVSIGVALRRDPEDRDGQDLLRQADMAMYRAKGEGRGTFRYFEDAMND 349


>gi|134292742|ref|YP_001116478.1| RNase II stability modulator [Burkholderia vietnamiensis G4]
 gi|134135899|gb|ABO57013.1| diguanylate cyclase/phosphodiesterase [Burkholderia vietnamiensis
           G4]
          Length = 667

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 19/192 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDID 137
           SG  + E   +  R+++L+  D L+GL N  A    +             ++ I+F D+D
Sbjct: 218 SGIDITEERNAQQRLTELANTDVLTGLPNRHAISERIRIALAADRSDVRGQVGILFLDLD 277

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAA 193
            FK++ND++GH  GD+++  +S  +     +   + RLGG+EF       +    E  A 
Sbjct: 278 NFKRVNDHYGHITGDRLLQDVSAVIGGCLPSGATLARLGGDEFLVLFEHGTRPLLEATAQ 337

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
           I+   LR  I    +       ++ + S GIA    H + + T+I  AD A+YVAK+ G+
Sbjct: 338 IILERLRTPIHLGLV------EVYTSCSIGIAMYPQHGDSLETLIRSADTAMYVAKEEGK 391

Query: 253 NRVVCFSDIENN 264
           +    FS   N 
Sbjct: 392 HTYRVFSLEMNQ 403


>gi|330830578|ref|YP_004393530.1| GGDEF domain-containing protein [Aeromonas veronii B565]
 gi|328805714|gb|AEB50913.1| GGDEF domain protein [Aeromonas veronii B565]
          Length = 310

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 4/179 (2%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQ 141
           I+   + +L      +S+LS  D L+ L N       L +     E LS+V  DID+FKQ
Sbjct: 133 ITFRDIHDLQCMVEEVSRLSCTDPLTELTNRRGAQQQLQALWLQGEPLSVVLGDIDHFKQ 192

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GHP GD  +  ++  +         + R GGEEF     G   ++    A  LR+
Sbjct: 193 VNDRYGHPAGDAALCAVAHAMASQLLPGESLARWGGEEFLLILPGCDIEQETRRAEQLRQ 252

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +  +++    G  + +TIS G A    +E I  ++  AD+ALY AK  GRNRVV  ++
Sbjct: 253 HVSTTRLPW-QGKQLSLTISLGCASMKGQESIDYLLMMADRALYQAKDQGRNRVVISTE 310


>gi|294010897|ref|YP_003544357.1| putative signal transduction protein [Sphingobium japonicum UT26S]
 gi|292674227|dbj|BAI95745.1| putative signal transduction protein [Sphingobium japonicum UT26S]
          Length = 895

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/188 (29%), Positives = 91/188 (48%), Gaps = 13/188 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           SG+ L E+  S   +++L++ D L+GL N    + SL              +++  D+D 
Sbjct: 353 SGTDLTEMRRSQAEVTRLAQYDSLTGLANRVQMMRSLEQAVAGKKGQPRDCTLMMLDLDR 412

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND  GHP GD ++  +S+++  V G    VGR GG+EF     G  ++   I+ + 
Sbjct: 413 FKIVNDTLGHPAGDALLRQVSERIQRVVGNKGLVGRQGGDEFKILLPGRPDK---IMLDH 469

Query: 199 LRKII--ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
           L + I  + SQ  +  G ++ I +S GI+           +I  AD ALY AK  GR   
Sbjct: 470 LARAIITDVSQPYMVEGTAVVIGVSIGISFCPQDGVTADELIRNADLALYAAKGDGRGVY 529

Query: 256 VCFSDIEN 263
             +S   +
Sbjct: 530 RFYSPEMH 537


>gi|167035659|ref|YP_001670890.1| diguanylate cyclase [Pseudomonas putida GB-1]
 gi|166862147|gb|ABZ00555.1| diguanylate cyclase [Pseudomonas putida GB-1]
          Length = 423

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 10/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L      ++  +  D L+GL N + F   L           + L+++F D D+FKQIND 
Sbjct: 237 LQSENQSLAHQASHDSLTGLPNRAFFEGRLSRSVRNAARQQDHLALLFLDSDHFKQINDT 296

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKIIE 204
            GH VGD+V+  ++D++         V RLGG+EFA       S ++A  +A  +   + 
Sbjct: 297 LGHAVGDEVLISVADRVRAQLREHDLVARLGGDEFAVLLTPLQSRKDAEHIAEKIVASM- 355

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
              + + SG SI  ++S GIA         ++++  AD A+Y AK+  R     
Sbjct: 356 KLPVQLDSGRSIATSLSVGIAYYPDDGADPASLLNAADAAMYQAKRKRRGHWQV 409


>gi|119898617|ref|YP_933830.1| putative signaling protein [Azoarcus sp. BH72]
 gi|119671030|emb|CAL94943.1| conserved hypothetical signaling protein [Azoarcus sp. BH72]
          Length = 547

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 108/237 (45%), Gaps = 17/237 (7%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGL----EYILVENLSLVIISITISLLLGYIS---GSI 89
           I +A V+ +A  F+  + L P +      E +    L L  + +     +G ++     +
Sbjct: 297 IAVALVLGVAGFFIRRM-LGPLHRAARLAERMTAGELPLAPLPVVRDDEVGLLTRAFNQL 355

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           L +L  S   + +++  D L+GL N       L          + +++ ++ D+D FK I
Sbjct: 356 LGKLTASQVDLQRMAHHDELTGLPNRVLLADRLRQGLARARRKDSRIAALYLDLDGFKPI 415

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRK 201
           ND+ GH  GD  +  +S +L  V      + R+GG+EF       +S ++ A +    R+
Sbjct: 416 NDSLGHEAGDIALRDVSARLRAVLRQSDTLARVGGDEFVLLVTDLASREDCAGVTELARR 475

Query: 202 IIENSQINIS-SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            IE     +S  G ++ + +S GIA     +   +++  AD A+Y AKK+GR     
Sbjct: 476 CIEAVAPPLSIKGHTLRVGVSIGIAFGAAHDDPESVLMAADHAMYEAKKAGRGCYRI 532


>gi|24372430|ref|NP_716472.1| GGDEF domain-containing protein [Shewanella oneidensis MR-1]
 gi|24346407|gb|AAN53917.1|AE015529_1 GGDEF domain protein [Shewanella oneidensis MR-1]
          Length = 489

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 94/222 (42%), Gaps = 21/222 (9%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK----------ELFISYNRISQ 102
           I  T +  +  ++V  L +V +  T +  +   +  +             L  +   +  
Sbjct: 267 IDETNYLLIYQVIVGTLLVVFLLATRTFFISRYNRRLTDKNEQLEALRLRLEHTNAELEF 326

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+ L N   F       +         + +V  DID+FK+IND  GH VGD ++
Sbjct: 327 LSTHDPLTKLYNRHYFNRQFVHEHRSEISSEGAICLVMLDIDFFKEINDTLGHAVGDNIL 386

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             LS  L         V R GGEEF      +S      L   +   I++ +       +
Sbjct: 387 MELSGVLQHCVRETDVVARWGGEEFVILCHQTSIDLVKTLCQRIAAAIKDYRF----SGN 442

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +T S GIA+  + EP+ +   RAD+ALY AK  GRN++  
Sbjct: 443 VQLTCSFGIAKLVNNEPMQSCFERADKALYQAKALGRNQICV 484


>gi|320324130|gb|EFW80211.1| putative sensor protein [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320328722|gb|EFW84722.1| putative sensor protein [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 577

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 78/169 (46%), Gaps = 9/169 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
            N +   S  D L+GL N      +L             LS+V  D+D+FKQIND  GH 
Sbjct: 398 RNALHAKSIRDPLTGLFNRRFMEETLKREIVRSSRSGSPLSLVMLDLDHFKQINDIHGHA 457

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+   ++ L           R GGEE        + + A   A +L   I  +QI 
Sbjct: 458 AGDAVLRSTANLLTKSLRGSDVACRYGGEEILLILPDCAGEYAVQKAQELCDSIR-AQIV 516

Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
             +G +I +T S G+A     +   + ++  AD+ALY AKK GR+RV+ 
Sbjct: 517 TENGTAISVTGSFGVASTGSGKYDATELVVLADKALYQAKKEGRDRVIY 565


>gi|288940345|ref|YP_003442585.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
 gi|288895717|gb|ADC61553.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
          Length = 499

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 84/179 (46%), Gaps = 11/179 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
            I  + + EL    + +   S  D L+GL N       L         Y   L+++ FD+
Sbjct: 301 LIGLADISELKAIQDELRAASFTDPLTGLYNRRYLYQRLAHEIDLANRYKHPLAVILFDL 360

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND FGH VGD V+  +S  L          GR GGEEF      +   EA  +A
Sbjct: 361 DLFKRINDTFGHGVGDDVLVCVSGTLKSCIREVDVAGRHGGEEFLVILPHADLTEATEVA 420

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +R  +     ++     +  TIS G+A+ C  E +   +  AD+ LY+AK SGRNR+
Sbjct: 421 ERIRASVAQISWSVEG---LAATISGGVAQHC-GESLDAFLDVADRRLYMAKDSGRNRI 475


>gi|89092549|ref|ZP_01165502.1| GGDEF protein [Oceanospirillum sp. MED92]
 gi|89083061|gb|EAR62280.1| GGDEF protein [Oceanospirillum sp. MED92]
          Length = 259

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/249 (25%), Positives = 111/249 (44%), Gaps = 9/249 (3%)

Query: 20  ESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS 79
             +  H   + +++ F   IAT ++I  + +     +    L+ I   N +L  + +   
Sbjct: 9   PLWREHGTRVAWAMGFIGIIATSLWILRVEMAAYMQSN--ELDLIAASNFNLYALYLIWL 66

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDI 136
           + + +    +   +  +  +I  LS  D L+G  N          +   +E  ++V  DI
Sbjct: 67  IAICFQGSMLFLLITRNARKIEALSTKDFLTGAHNRLGLEKVWQRILDTHETFAVVILDI 126

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND  GH VGD+++  +  +   V      + R GGEEF     G+  ++A   A
Sbjct: 127 DHFKKINDTHGHDVGDQILKLVVARTHGVLRQEDKLARFGGEEFVIILPGADVEQAVRFA 186

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRN 253
             +R  IE     +    +I +T S G+A       +  +  ++  AD+ALY AK +GRN
Sbjct: 187 ERVRVAIETDHFQLRD-VAISVTASFGVAGQELVGDRGDLYELVRVADEALYHAKGNGRN 245

Query: 254 RVVCFSDIE 262
           RVV      
Sbjct: 246 RVVMAESQM 254


>gi|312110625|ref|YP_003988941.1| diguanylate cyclase with PAS/PAC sensor [Geobacillus sp. Y4.1MC1]
 gi|311215726|gb|ADP74330.1| diguanylate cyclase with PAS/PAC sensor [Geobacillus sp. Y4.1MC1]
          Length = 553

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 12/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
             + E      ++  L+  D L+ L N   F                 L++++ D+D FK
Sbjct: 375 RDVTEKINYEKQLEFLAFHDPLTKLPNRRLFFDIVDKSIIEAERTKSGLAVLYLDMDNFK 434

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
            +ND FGH +GD+++   + ++    G    V R+GG+EF     G  E+ +   +A  L
Sbjct: 435 DVNDTFGHDIGDELLKQFAKRIKKNVGEHNVVCRIGGDEFLVLLKGVKERTDVHQIAKRL 494

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              I   +       +I  T S GIA           +I+ ADQALY AK   +N    +
Sbjct: 495 STNIR--KPYRIKHLTIRTTASMGIAVSPIDGTTSKALIHHADQALYQAKMK-KNCYRFY 551

Query: 259 S 259
           S
Sbjct: 552 S 552


>gi|224824277|ref|ZP_03697385.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
 gi|224603696|gb|EEG09871.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
          Length = 718

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 11/179 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
            + +   S   I   +  D L+ L N   F+  L             L+++F D+D FK+
Sbjct: 270 DITDRKRSEKTIWHQANYDLLTELPNRRLFLERLQQGIEHAKGSGSALALMFIDLDRFKE 329

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH VGD++++    ++         V RLGG+EF       S  +   +    + 
Sbjct: 330 VNDMLGHKVGDQLLSQAGQRIADCVRETGLVARLGGDEFTVILENLS--QPTPIEQVAQS 387

Query: 202 IIENSQINISSGPSI-HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IIE        GP + +++ S G+       + + T++  ADQA+Y AK  G+NR   F
Sbjct: 388 IIETLSKPFQLGPDVAYVSASIGVTLYPKDAQDMDTLLINADQAMYHAKALGKNRFCYF 446


>gi|70732971|ref|YP_262744.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5]
 gi|68347270|gb|AAY94876.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5]
          Length = 430

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 72/285 (25%), Positives = 120/285 (42%), Gaps = 37/285 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIF------LFYIG 54
           + +S    L  WL  E    +    ++M    + + +F A  + +A  +      L    
Sbjct: 141 LEQSYPQALLNWLA-EIRWPALHG-SWMSLIQLSYPVFFAAFLLLAIQYWRSPRPLHAAQ 198

Query: 55  LTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           L    GL ++L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL 
Sbjct: 199 LVGLLGLFWMLPKTFILPFTLNIMCSQVMLMIAAAVAHEAY-------QMAFRDELTGLP 251

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A    +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  V G      
Sbjct: 252 GRRALNERMQRLGRNYVLAMTDVDHFKKFNDTHGHDVGDQVLRLVASKLSKVTGGGRAYR 311

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-------------------ISSGP 214
             G EEFA    G +  E       +R+II    I                    +++  
Sbjct: 312 YGG-EEFAVVFAGKTMDECMPHLEMIREIIATYNIQLRNQDNRPQDDQQGRQRRGVAAAS 370

Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S+ +TIS G+AER         ++  ADQALY AK +GRN V+ F
Sbjct: 371 SVSVTISIGVAERLAEHRTPEEVLKAADQALYSAKGAGRNCVIAF 415


>gi|94309536|ref|YP_582746.1| putative sensor protein [Cupriavidus metallidurans CH34]
 gi|93353388|gb|ABF07477.1| putative signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Cupriavidus metallidurans
           CH34]
          Length = 1121

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/194 (25%), Positives = 79/194 (40%), Gaps = 9/194 (4%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           +L   +    +         ++  +  D L+GL N + F   L            + ++ 
Sbjct: 667 VLGAVLVFQDITSSRAMQRELAHSATHDALTGLPNRAWFEKRLREACEQARLLGHRTALC 726

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F D+D FK +ND  GH  GD ++  L   +         + RLGG+EFA      S   A
Sbjct: 727 FIDLDRFKIVNDTAGHGAGDVLLRELGYVIRHHVRPDDLLARLGGDEFALLLKDCSIDHA 786

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSG 251
             +   +   I   +     G    +  S GIA       P+S ++ RAD A Y AK +G
Sbjct: 787 EQVCQKVINAIRERRFPW-EGRVYDVGASIGIAAIDADAPPVSELMSRADVACYAAKAAG 845

Query: 252 RNRVVCFSDIENNT 265
           RNRV  +   E++ 
Sbjct: 846 RNRVSVYRRDESDA 859


>gi|313201431|ref|YP_004040089.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. MP688]
 gi|312440747|gb|ADQ84853.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. MP688]
          Length = 679

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 13/194 (6%)

Query: 82  LGYISGSI--LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           L Y  G++  + E       I   +  D L+GL N +     L            KL++V
Sbjct: 226 LLYFEGTVEDITERKSYNALIEYQATHDDLTGLPNRTLMQDRLLQAISYADRTASKLAVV 285

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F D+D FK IND+ GH +GD+++  ++ +L         V R GG+EF          +A
Sbjct: 286 FVDLDKFKDINDSMGHFIGDQLLIAMARRLESCIRDSDTVARPGGDEFVLLLSNIHGMDA 345

Query: 193 AILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250
             L+  L++++  +    S  G    +T S GI+          T++  AD A+Y AK+ 
Sbjct: 346 --LSQTLQRVLALTSEPCSIEGKDFTVTSSIGISLYPDDGKTSETLLKNADTAMYKAKQE 403

Query: 251 GRNRVVCFSDIENN 264
           G+N    ++   N+
Sbjct: 404 GKNNFQFYTRELNS 417


>gi|224824592|ref|ZP_03697699.1| diguanylate cyclase with PAS/PAC sensor [Lutiella nitroferrum 2002]
 gi|224603085|gb|EEG09261.1| diguanylate cyclase with PAS/PAC sensor [Lutiella nitroferrum 2002]
          Length = 641

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 11/181 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           +  ++K+L    + + + +  D L+G+ N   F+                L +   D+D 
Sbjct: 452 TERLVKQLQEMQHELYERATHDDLTGVANRPHFLQQAQQAYRQALRQGTPLGLAIIDLDM 511

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND +GH  GD V+  ++            +GRLGGEEFA         +A  LA  
Sbjct: 512 FKLVNDTYGHDAGDLVLQQVAMACESCLDEGQQLGRLGGEEFAILMPHCDYAQAIELAEQ 571

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRV 255
           +++ I    I+      I +T+S G++    ++    I  +   AD ALY AK++GRNRV
Sbjct: 572 VKRKIAELIISYHDD-RIRVTLSIGVSCWSPQDRPLLIGRLFKLADLALYQAKETGRNRV 630

Query: 256 V 256
           V
Sbjct: 631 V 631


>gi|149189286|ref|ZP_01867572.1| diguanylate cyclase [Vibrio shilonii AK1]
 gi|148836845|gb|EDL53796.1| diguanylate cyclase [Vibrio shilonii AK1]
          Length = 608

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 99/203 (48%), Gaps = 10/203 (4%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           ++  LS  +  + I L       ++  EL  +  R+   +  D L+GL N   F+S L  
Sbjct: 400 ILSRLSTTVSELHIRLKNHNEMTALQDELIETNRRLHIAAETDELTGLPNRRPFMSELAH 459

Query: 125 YNEKLSI-----VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGE 178
             E L +     +  D+D+FKQ ND +GH  GD  + +++  L  V       V R+GGE
Sbjct: 460 NTESLFVSTITTMMIDVDHFKQYNDTYGHVQGDFALRYVAQALKQVLSPCGHMVARIGGE 519

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIA---ERCHKEPIS 234
           EF A  + +S++E+ +LA  +R+ +E   I  S      I TIS G+A      H     
Sbjct: 520 EFCALLVNTSQEESVVLAQQMRQEVEKLNITHSGNDPYDIVTISIGVAFQHLGDHPITPQ 579

Query: 235 TIIYRADQALYVAKKSGRNRVVC 257
            ++  AD+ALY AKK GRN V  
Sbjct: 580 NMLENADEALYAAKKRGRNHVEI 602


>gi|71908665|ref|YP_286252.1| GGDEF [Dechloromonas aromatica RCB]
 gi|71848286|gb|AAZ47782.1| GGDEF protein [Dechloromonas aromatica RCB]
          Length = 523

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 11/204 (5%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           L   LV   +L+  ++     L       L+     + R + L+  D L+GL N   F+ 
Sbjct: 311 LTRELVTIFALLACALVSIPTLTLRHYKALERGVREHERSAYLATHDLLTGLPNRFLFLD 370

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                 ++        +++  D+D+FK+IND++GH VGD+V+   + ++         V 
Sbjct: 371 RFEQAVQQHVRNANSFALLLIDLDHFKEINDSYGHEVGDEVLVETAKRMTAEIRACDTVA 430

Query: 174 RLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R GG+EF      + +  +A  +   L   I ++ +  S+G  + +T S G+A    H  
Sbjct: 431 RHGGDEFVILLANTLNVDDAQTVGEKLLAAI-STPMKTSAGQ-LRLTGSIGVAIYPEHGT 488

Query: 232 PISTIIYRADQALYVAKKSGRNRV 255
            +  I   ADQA+Y AKK GRN V
Sbjct: 489 SLDAIRRAADQAMYQAKKMGRNMV 512


>gi|332162020|ref|YP_004298597.1| hypothetical protein YE105_C2398 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666250|gb|ADZ42894.1| hypothetical protein YE105_C2398 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330861225|emb|CBX71478.1| hypothetical protein YEW_JB39690 [Yersinia enterocolitica W22703]
          Length = 693

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 8/179 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDI 136
             +    +         +   +  D L+GL+N       L     +L       + + D+
Sbjct: 511 AVVVFQDVTRARHEQRELQYQANHDMLTGLINRRRLEERLNQAISQLGQDEQHILCYVDL 570

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK +ND+ GH  GD V+  ++  +         V RLGG+EFA        + A  + 
Sbjct: 571 DYFKDVNDSAGHEAGDMVLRMVAQTMQQAVRENDIVARLGGDEFAIVLFNCQHKPATEVL 630

Query: 197 NDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +   I + Q +   G S   T S G ++     E  +  + +AD A Y AK +GRNR
Sbjct: 631 ERVVADIASIQFHWH-GQSYSFTASLGAVSLNRQTETAAQAMRQADIACYAAKHAGRNR 688


>gi|297568746|ref|YP_003690090.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924661|gb|ADH85471.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 1018

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 87/184 (47%), Gaps = 9/184 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFD 135
             +    + ++ ++  R+++ ++ D L+GL N   F + L           ++  + + D
Sbjct: 556 AVMVFRDVSKIRVAERRMAREAKYDELTGLRNRREFNALLNQALAAASEEGKEHVLGYLD 615

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D FK IND  GH  GD+V+  +++ +         + RLGG+EFA        +    +
Sbjct: 616 LDKFKIINDTCGHDAGDEVLKQVAELMQAQLRNTDILARLGGDEFAILLSSCPMEAGHKI 675

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           A  +R+ +E  +     G +  +++S G+ +       +  ++  AD A Y AK+ GRNR
Sbjct: 676 AEQIRRALEEYRFTWH-GRAFELSVSIGLVQLQADSGTLDDVLKAADTACYQAKEQGRNR 734

Query: 255 VVCF 258
           +  +
Sbjct: 735 IQQY 738


>gi|206602084|gb|EDZ38566.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptospirillum sp. Group II '5-way CG']
          Length = 1139

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 92/205 (44%), Gaps = 22/205 (10%)

Query: 74  ISITISLLL------GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSL 122
           +SIT +L+       G I   IL E  IS  +     + + +  D L+GL N +     +
Sbjct: 544 VSITDTLITAIRNEKGDIRHLILTETDISEKKRLEDILKRQAWSDGLTGLPNRTHLEILM 603

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                +       L++ F D+D FK +ND  GH  GD+++  +S +L     +   V RL
Sbjct: 604 DEAIHRSRLSGKGLAVCFLDLDGFKPVNDRLGHAFGDRILIEVSHRLQNAVRSGDTVARL 663

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAGIAERCHK-EPI 233
           GG+EF            A +   L +I+E+      + G  + +T S G+        P 
Sbjct: 664 GGDEFVLLLEEIDRN--ATIHQLLARILESIARPFEAPGTPLSLTASIGVTLYPEDLSPS 721

Query: 234 STIIYRADQALYVAKKSGRNRVVCF 258
             ++  AD ALY AK+ GRNR V F
Sbjct: 722 DVLLRHADHALYQAKEDGRNRFVLF 746


>gi|300310865|ref|YP_003774957.1| response regulator containing a CheY-like receiver domain and a
           GGDEF domain transmembrane protein [Herbaspirillum
           seropedicae SmR1]
 gi|300073650|gb|ADJ63049.1| response regulator containing a CheY-like receiver domain and a
           GGDEF domain transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 554

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 102/243 (41%), Gaps = 25/243 (10%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS------ 88
           + IF    +   +I   +       G+  +L+    L +I      L+  ++G       
Sbjct: 279 YPIFTVVALAKDDILEDWSRHVWVRGIGVVLL----LAVICFGGKRLVVLVAGRERAEAQ 334

Query: 89  ---ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
                +EL   Y  +   S+ D L+ + N   F ++L           E LS++  D+D+
Sbjct: 335 AIAARQELESLYRTLEAQSQKDGLTDVFNRRYFDAALAAELARLNRTGESLSLMMIDVDH 394

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           FKQ ND +GH  GD  +  ++  +  V       V R GGEEFA          A  LA+
Sbjct: 395 FKQFNDTYGHAAGDVCLRQVAAAISTVARRQGDIVARYGGEEFAVILPNCHPGSAQGLAH 454

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPI----STIIYRADQALYVAKKSGRN 253
            + + +   +I     P   +TIS G+A     + +      +I  AD ALY AK+ GR+
Sbjct: 455 RVVQAVRGLEIAHERSPMGVVTISVGVASLASGKSLLIEPRELIDSADGALYRAKEEGRD 514

Query: 254 RVV 256
           R V
Sbjct: 515 RAV 517


>gi|258405308|ref|YP_003198050.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfohalobium retbaense DSM 5692]
 gi|257797535|gb|ACV68472.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfohalobium retbaense DSM 5692]
          Length = 738

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
             L E   S + I      D L+ L N + F   L           +K S++F D+D FK
Sbjct: 288 RDLTERIRSEDLIRFHLYHDSLTSLPNRTLFNDRLHMALLHAKRNKKKFSLLFLDLDNFK 347

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
           +INDN GH  GD+V+  ++  L         + R+GG+EF        +  E   +   +
Sbjct: 348 KINDNLGHQSGDEVLQNVAKILKKSVRESDTISRIGGDEFVILIENLDKLSETDKICYKI 407

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
               +  +        + IT S GIA    H +    ++ RAD A+Y  K   +N    +
Sbjct: 408 LNAFK--EPMYCQDQEVRITASIGIAVYPEHGQTKEQLMRRADMAMYKIKSKTQNSFCYY 465

Query: 259 SDIENNTC 266
           S+ +N +C
Sbjct: 466 SNKDNGSC 473


>gi|170742549|ref|YP_001771204.1| diguanylate cyclase [Methylobacterium sp. 4-46]
 gi|168196823|gb|ACA18770.1| diguanylate cyclase [Methylobacterium sp. 4-46]
          Length = 383

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 66/250 (26%), Positives = 113/250 (45%), Gaps = 19/250 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL 69
            IW    + L S  P   +             ++F+  I L  +   P       L    
Sbjct: 136 EIWRGRGEPLVSRLPAAALTASE--------ALLFVVRIPLTAL-RPPSEPYPLTLPGMG 186

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--SYNE 127
           +LV++ +  ++ L ++  ++ KE      R+S  +  D L+G LN      +        
Sbjct: 187 ALVLLGLLYTVALAFLFLALAKERLEWQQRLS--ALTDPLTGALNRRGLEQAAACVLAGG 244

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
             +++  D+D+FK++ND +GH VGD+V+   +  +         +GRLGGEEFA      
Sbjct: 245 PATLLLLDLDHFKRVNDTYGHGVGDEVLVACAAAMPGCLPPRAVIGRLGGEEFACLLPDG 304

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
             + A  +A  +R+ +   ++  +  P +H+T S G A       +  +I RAD+ALY A
Sbjct: 305 --EGAGEIAEAIRRAVAALRLERA--PDLHVTASIGAA--RGGSELQCLIARADRALYRA 358

Query: 248 KKSGRNRVVC 257
           K+ GRNRV  
Sbjct: 359 KRGGRNRVAW 368


>gi|330504470|ref|YP_004381339.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328918756|gb|AEB59587.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 375

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 100/262 (38%), Gaps = 34/262 (12%)

Query: 26  TFMIYFSI--FFSIF-IATVIFIANIFLFYIGLTPFYGLEY----------ILVENLSLV 72
             M+++ +   F +F +   +F       + G T    +E             ++   L 
Sbjct: 107 VMMVFYVLILLFGVFQLPPRVFARCAAFGFFGFTAMVLVEAYRMQLVDPSMAWLQVWVLF 166

Query: 73  IISITISLLLGYISGSILKELFISY-------------NRISQLSRIDCLSGLLNHSAFI 119
           I+ + + L   Y+     +     +              ++ +L   D L+GL N   F+
Sbjct: 167 ILLVWLCLFSSYVQAMRKRMRQRRFALQAHQDTLRGMMRQLEELVATDELTGLFNRRHFL 226

Query: 120 SSLGS------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                      +  +  +   D+D+FK+IND  GH  GD+V+   +            V 
Sbjct: 227 RLASRELEHLGHGRQHGLALIDLDHFKRINDAHGHAAGDRVLQTFAAVARACLRDGDIVA 286

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R GGEEF      +   +       LR+    ++       ++  ++SAG+      + +
Sbjct: 287 RYGGEEFVLLLPNTDADQFTACCERLREAFAKAEPVGVKLETL--SLSAGMTLLVAGDDL 344

Query: 234 STIIYRADQALYVAKKSGRNRV 255
              + RADQALY AK+ GRNR 
Sbjct: 345 DEALQRADQALYQAKRGGRNRC 366


>gi|254392676|ref|ZP_05007851.1| integral membrane phosphodiesterase [Streptomyces clavuligerus ATCC
           27064]
 gi|197706338|gb|EDY52150.1| integral membrane phosphodiesterase [Streptomyces clavuligerus ATCC
           27064]
          Length = 903

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 16/193 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKL-SIVFFDID 137
            +   + E      ++   +  D L+ L N + F   +G         +   +++F D+D
Sbjct: 429 FNSRDVTERVRLQAQLQHSAEHDPLTDLPNRALFTERVGQALTGRRAGDPGTAVLFIDLD 488

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-------EQ 190
            FK +ND  GH  GD+++   + +L     +     RLGG+EFAA  LG         E 
Sbjct: 489 GFKGVNDRLGHQAGDELLIQAAQRLGDSVRSGDTAARLGGDEFAALILGDGIRDQASRES 548

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +   +A  LR  +  SQ     G  + +  S G+A        S ++  AD A+Y AK  
Sbjct: 549 QVVEIAERLRLTL--SQPYRIDGQDVRVAASIGVAFAEKGIAPSVLMRNADLAMYRAKAG 606

Query: 251 GRNRVVCFSDIEN 263
           G++RV  ++    
Sbjct: 607 GKDRVELYAPQMQ 619


>gi|296390527|ref|ZP_06880002.1| diguanylate cyclase (GGDEF) domain [Pseudomonas aeruginosa PAb1]
          Length = 398

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 88/176 (50%), Gaps = 10/176 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           +EL     ++  L+  D L+GL N   F          +    + LS++  D+D+FK IN
Sbjct: 213 QELEEKNRQLEYLAGHDPLTGLFNRREFDQLVLMELARIARQPQPLSLLMVDLDHFKYIN 272

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHP GD+VI   ++ L     +   V RLGGEEF      ++EQ+A  LA  LR+ +
Sbjct: 273 DRYGHPFGDEVIRHAANLLRGNTRSSDSVARLGGEEFLLLLPDTAEQQARSLAEKLRERL 332

Query: 204 ENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
           E + +    G  + +T S G+A            +   ADQALY AK SGRNRV  
Sbjct: 333 EGTPLATQDGV-LCLTASFGVASLDGGGQASYEQLYSAADQALYRAKSSGRNRVEV 387


>gi|254458235|ref|ZP_05071661.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207085071|gb|EDZ62357.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 617

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 8/182 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           E  I   ++   S  D ++GL N                   E  S++  D+D+FK +ND
Sbjct: 432 ESQILMEKLKDTSLRDGMTGLYNRRFLEEVIDKIMHQATRSKETYSVLMLDVDFFKMVND 491

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGD+VI  +   L           R GGEEF      +S++    +A+ +     
Sbjct: 492 TYGHDVGDRVIVEIGKVLKDNIRDADLAIRYGGEEFVVMLHNASDEGTQEVASKIHSAFA 551

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
               ++ +G  +  T+S GI++     + I   I  AD ALYVAK +GRN++V +     
Sbjct: 552 ALSFDVGTGEMMKKTMSIGISKFPKDGDTIWKCIKFADTALYVAKTTGRNKIVHYEKEMG 611

Query: 264 NT 265
            +
Sbjct: 612 ES 613


>gi|193222285|emb|CAL61425.2| conserved hypothetical protein; putative GGDEF, EAL and PAS/PAC
           domains [Herminiimonas arsenicoxydans]
          Length = 937

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 94/199 (47%), Gaps = 12/199 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           + I ++L +   S  ++L I   ++S  +  D L+GL N   F   L          +++
Sbjct: 481 LIIGVVLVFHDVSDSRKLAI---QLSHQAAHDPLTGLFNRREFERRLELAIDTLARQSKQ 537

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            ++++ D+D FK +ND  GH  GD+++  ++  L  +      + RLGG+EF A     S
Sbjct: 538 HALLYLDLDQFKIVNDTCGHSAGDELLRQITALLQPLVRDSDTLARLGGDEFGAFLENCS 597

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVA 247
            + A  +A  LR+ I +    +       I +S G+     +   +  ++  AD A YVA
Sbjct: 598 PESAIRIAEKLRQTICDFHF-VWQDKIFPIGVSIGLVNFNTNALSLPDLLSAADTACYVA 656

Query: 248 KKSGRNRVVCFSDIENNTC 266
           K +GRNRV  +   ++   
Sbjct: 657 KDAGRNRVHIYRPEDHQLA 675


>gi|150392102|ref|YP_001322151.1| sensor diguanylate cyclase [Alkaliphilus metalliredigens QYMF]
 gi|149951964|gb|ABR50492.1| 7TM domain sensor diguanylate cyclase [Alkaliphilus metalliredigens
           QYMF]
          Length = 650

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 83/186 (44%), Gaps = 13/186 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL  +   +  LS  D L+ + N   F  +L             ++++F DID FK  ND
Sbjct: 463 ELEKANKALELLSSKDALTDIWNRRHFDEALKLEWRRGLRLKTPVALIFIDIDSFKAFND 522

Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD+ +  ++  L   +  +  FV R GGEEF        E +A  +A  LR  I
Sbjct: 523 QYGHQEGDRALKNVAQALKHSIHRSGDFVARYGGEEFVVILPNIEEDKAMYMAESLRITI 582

Query: 204 ENSQINISSG-PSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC--F 258
           E  +I       S  +T+S G+             +I  AD+ALY+AK  G+N+     +
Sbjct: 583 EGLEILHEKSLVSTFLTVSLGVTTMIPATNSSPEELILAADKALYLAKDRGKNQAQFIQY 642

Query: 259 SDIENN 264
              EN+
Sbjct: 643 DRSENS 648


>gi|269963645|ref|ZP_06177968.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831658|gb|EEZ85794.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 480

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 5/214 (2%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            I   +I +   Y      +   +LVI ++     L        ++L ++  ++ +L+  
Sbjct: 253 RILSRWIHVKTVYPAYLAPLAVFALVIAAMFHIFSLKRTVALRTRQLTLANQQLFELTLT 312

Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ L N    I  L +       L+++ FDID FK IND FGH  GD+ I  +++   
Sbjct: 313 DPLTKLYNRRHLIERLATLSTVKRDLTVMVFDIDDFKSINDQFGHLAGDQAIVAVANAAK 372

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
            +    + + R+GGEEFA  ++  S +EA  LA ++   +    I +  G +IH++IS G
Sbjct: 373 SITDEKVTLARIGGEEFALVSVSLSAEEAQTLACEICTHVNQMPIPL-DGQNIHVSISLG 431

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            A     +   ++   ADQ +Y  K SG+NR V 
Sbjct: 432 CAYYPKFDETPSL-QDADQLMYRGKASGKNRAVF 464


>gi|126735069|ref|ZP_01750815.1| diguanylate cyclase response regulator [Roseobacter sp. CCS2]
 gi|126715624|gb|EBA12489.1| diguanylate cyclase response regulator [Roseobacter sp. CCS2]
          Length = 442

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 19/192 (9%)

Query: 85  ISGSILKELFISYNRIS-------QLSRIDCLSGLLNHSAFISSLGSY-------NEKLS 130
           +    L      ++++          +  D L+GL N       L            +L+
Sbjct: 246 LRAKRLIARKRKHDKLRDTLRNGLNAAVTDPLTGLFNRRYVEPHLARLADQSRKSGRELA 305

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  DID+FK +ND  GH  GD+V+  L+D+L         V R+GGEEF  A  G+S  
Sbjct: 306 VMMIDIDHFKAVNDTHGHAAGDQVLIELADRLRENLRAIDLVARMGGEEFLVAMPGTSVT 365

Query: 191 EAAILANDLRKIIENSQINISSG-PSIHITISAGIAERCHKEPISTII----YRADQALY 245
           +A + A+ LR ++      + S  P I +T+S G+A     +P +  I     +AD+ALY
Sbjct: 366 DARLAADRLRALVNTMPFELGSDLPDIKVTVSIGLAVSGQIKPETAAINKICAQADKALY 425

Query: 246 VAKKSGRNRVVC 257
            AK  GR++V  
Sbjct: 426 AAKSGGRDQVAM 437


>gi|119476786|ref|ZP_01617096.1| response regulator protein with GGDEF domain [marine gamma
           proteobacterium HTCC2143]
 gi|119450042|gb|EAW31278.1| response regulator protein with GGDEF domain [marine gamma
           proteobacterium HTCC2143]
          Length = 201

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/202 (29%), Positives = 105/202 (51%), Gaps = 12/202 (5%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           ++ ++L++ ++ ++    L   +    KE+ +  + +  L+RID L+ + N  AF    G
Sbjct: 1   MIYDDLTVALVFVSFYKFLAIYN----KEIALREHELEILTRIDPLTNISNRRAFYEVAG 56

Query: 124 -------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                       LS++ FD+D FK+IND +GH  GD V+  L++++     T     R G
Sbjct: 57  KLLSGFKRNKLPLSLLLFDVDNFKKINDVYGHRYGDVVLKTLANEVRHSIRTTDCFARFG 116

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           GEEF       +  E  +++  +R +++NS++    G  I+ T+S G       +  +  
Sbjct: 117 GEEFIIIFPQINADELLLISEKIRHVLQNSEVKTDKGDLINYTVSIGATTFRETDGNLDM 176

Query: 236 IIYRADQALYVAKKSGRNRVVC 257
           +I RAD+A+Y AKK GRNRV+ 
Sbjct: 177 VIQRADEAMYEAKKGGRNRVIL 198


>gi|58616411|ref|YP_195541.1| sensory box protein [Azoarcus sp. EbN1]
 gi|56315873|emb|CAI10517.1| sensory box protein [Aromatoleum aromaticum EbN1]
          Length = 728

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 99/212 (46%), Gaps = 15/212 (7%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNH------- 115
           I  + L++  +    S +  YIS    L ++  +  R+  L+  D L+GL N        
Sbjct: 236 IYPQWLNISAVRDEESEVSHYISVFMDLSQIKSNEKRLELLAYFDPLTGLANRTLLADHM 295

Query: 116 SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
              I+     +   ++ + D+D FK +ND FGH VGD+ +  ++ ++  V      V RL
Sbjct: 296 RMAIARSRRESTLFALGYLDLDGFKPVNDQFGHEVGDQFLQEIAKRIKSVVRGDDTVARL 355

Query: 176 GGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPI 233
           GG+EF     G  + +E       L   +E   I + +G  +  T S G+    C +   
Sbjct: 356 GGDEFVILVQGLRKPEECHHTFERLLAKLEE-PIQL-NGHHLTATGSIGVTLFPCDEADP 413

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS---DIE 262
            T++  AD A+Y AK++G+NR+  +    D+E
Sbjct: 414 DTLLRHADHAMYQAKEAGKNRIHLYDTEFDVE 445


>gi|288960271|ref|YP_003450611.1| GGDEF domain-containing protein [Azospirillum sp. B510]
 gi|288912579|dbj|BAI74067.1| GGDEF domain-containing protein [Azospirillum sp. B510]
          Length = 402

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 109/236 (46%), Gaps = 14/236 (5%)

Query: 38  FIATVIFIANIFLFYIGLT-PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96
            +  V+ I  +    +G+T       Y+++++    I  +    LLG + G+I   L  S
Sbjct: 162 LLCVVLSIVYLARMVVGITRGDEATGYLMIDDRMERIAFLL--TLLGTVIGAINYVLMAS 219

Query: 97  ---YNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNF 146
                 +S+L+  D L+G LN                 +   L+++  DID FK IND  
Sbjct: 220 DEFNRELSKLAHTDGLTGSLNRRRLFELGEVEFRRSRRHGRALTVLTLDIDRFKSINDRA 279

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GHP GD+VI  ++D           +GR+GGEEFA    G  E+   +LA  LR  IE  
Sbjct: 280 GHPFGDRVIQAVADCCAGQIRHEDVMGRIGGEEFAILLPGIGEEAGRLLAERLRATIERQ 339

Query: 207 QINISSGPSIHITISA-GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              + +   + +T S  G++        S +I ++D ALY AK +GRN+V  F+  
Sbjct: 340 LAPLGTEGGVTVTCSIGGVSLTREHGEFSDLIAQSDCALYDAKNAGRNQVRFFAPA 395


>gi|229136697|ref|ZP_04265356.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196]
 gi|228646767|gb|EEL02943.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196]
          Length = 797

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/200 (25%), Positives = 96/200 (48%), Gaps = 10/200 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121
           +++V I I       Y+    + ++    + I+ L+  D ++ + N + F       I  
Sbjct: 338 VTIVPIMIEGQPFGSYVMVKDITKMRQQQDEINYLAFHDTVTKIGNRTFFQQELEKSIER 397

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                ++  +++ D++ FK IND  GH +GD V+  ++ +        + + R+GG+EFA
Sbjct: 398 AQKTQDEFGLLYIDLNRFKTINDTLGHSIGDSVLKEVAKRFRTCLSPAIPLARIGGDEFA 457

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRA 240
                 SEQ+   L   L +I E  +  + +  S ++++S GIA        I+T++  A
Sbjct: 458 IIVHNHSEQQLLDLCETLFRITE--EPFVVNQHSFYLSLSIGIAVYPFGGTNITTLLQHA 515

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D A+Y AKK G N V  + +
Sbjct: 516 DIAMYNAKKKGNNAVCMYDE 535


>gi|254448531|ref|ZP_05061991.1| PAS sensor diguanylate cyclase and phophodiesterase [gamma
           proteobacterium HTCC5015]
 gi|198261914|gb|EDY86199.1| PAS sensor diguanylate cyclase and phophodiesterase [gamma
           proteobacterium HTCC5015]
          Length = 796

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 9/185 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136
            I    + E     N++S  +  D L+GL+N   F   L    E+        ++++ D+
Sbjct: 351 LIVSEDISEARQLSNQLSHQASHDALTGLVNRGEFERRLRQLVERAHVDDSGHALLYLDL 410

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK IND  GH  GD+++  L+  L         + RLGG+EF       + ++A  LA
Sbjct: 411 DQFKIINDTCGHVAGDELLRQLAGLLKHKVRKGDTLARLGGDEFGVLVENCTMEDAERLA 470

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             +  ++ + Q       S  I +S G+A         + I+ +AD A Y AK  GRNRV
Sbjct: 471 QTMCDVVASFQFFWGVS-SFRIGVSIGLASIASGSGDYADIMSQADSACYAAKDLGRNRV 529

Query: 256 VCFSD 260
             + +
Sbjct: 530 HIYRE 534


>gi|108759945|ref|YP_632208.1| FHA domain/GGDEF domain-containing protein [Myxococcus xanthus DK
           1622]
 gi|108463825|gb|ABF89010.1| FHA domain/GGDEF domain protein [Myxococcus xanthus DK 1622]
          Length = 291

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 14/199 (7%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--- 122
           + N  LV I  TI     YI+G  ++     ++ I +L+ +D L+ + N   F   L   
Sbjct: 98  LRNGDLVKIGRTI---FKYIAGGNIE--AAYHDEIYRLTTMDGLTQIYNRRYFDEQLDRE 152

Query: 123 ----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                 Y   LS+V  DID+FK +ND +GH  GD V+  L+  +           R GGE
Sbjct: 153 ISRSRRYERMLSLVLLDIDHFKAVNDKYGHLAGDSVLKQLASTVRTKIRREDVFARYGGE 212

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTII 237
           EFA      S      LA  +R+++E  +        I +T+S G+A    H      ++
Sbjct: 213 EFAILLPEVSLSGTRQLAEKVRRLVEKQRFEF-DRQVIPVTVSVGLAVLEPHHREPGELV 271

Query: 238 YRADQALYVAKKSGRNRVV 256
             AD+ L+ AK SGRNRVV
Sbjct: 272 RDADEKLFDAKTSGRNRVV 290


>gi|320535327|ref|ZP_08035446.1| diguanylate cyclase domain protein [Treponema phagedenis F0421]
 gi|320147827|gb|EFW39324.1| diguanylate cyclase domain protein [Treponema phagedenis F0421]
          Length = 366

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 69/251 (27%), Positives = 116/251 (46%), Gaps = 23/251 (9%)

Query: 19  LESFSPHTFMI--YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISI 76
           L+   PH  ++    ++  S+FI        +    +G     G +Y   E   ++ I+ 
Sbjct: 127 LKQLIPHDEILETLLALHPSLFIPFKAKNRLVGFLLLGEQINAGEDYTPYEKEFIMSIA- 185

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLS 130
             SL    I+ ++L E           S  D ++ L     F + L         +  LS
Sbjct: 186 --SLAAIAINNALLLER----------STTDMMTHLKLKHYFYTVLNEKADTLPDDTPLS 233

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           I+  DID+FK+IND +GH  GD V+  ++  +     T     R GGEEF      ++ +
Sbjct: 234 ILMLDIDFFKKINDTYGHACGDLVLQQVAKIIQSCTRTGDMAARYGGEEFIVMLYNTNSK 293

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKK 249
           EA  +A  +R +I++  I  +    + +TIS G+A    K E +  ++ RAD ALY +K+
Sbjct: 294 EAQKIAERIRTLIQDLSIQYNE-FEVRVTISIGVATFLQKMESLKNLLERADIALYQSKE 352

Query: 250 SGRNRVVCFSD 260
           +GRNRV   ++
Sbjct: 353 NGRNRVSISAE 363


>gi|309780685|ref|ZP_07675426.1| periplasmic sensor diguanylate cyclase (GGDEF domain) [Ralstonia
           sp. 5_7_47FAA]
 gi|308920367|gb|EFP66023.1| periplasmic sensor diguanylate cyclase (GGDEF domain) [Ralstonia
           sp. 5_7_47FAA]
          Length = 585

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 9/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
            +  E       +S+++  D L+ LLN  AF    G+  +        ++++ FDID+FK
Sbjct: 393 RLEVERAHLMQELSRMAETDPLTQLLNRRAFEDRAGAMCKSPQPKARLIALIMFDIDHFK 452

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH VGD+ +  ++        +   V R+GGEEFA      S  +A  +A+ LR
Sbjct: 453 RINDTYGHAVGDEALRTVARLCRAEGPSADMVARIGGEEFAVMVWADSLAQARAVADHLR 512

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
             I    +   +     +T S G+A     +   +  ++ RAD  LY AK +GRN V+ 
Sbjct: 513 HRIAEVTVPTGTDLPCRMTASFGVAAAPAADGPQLEPLLRRADHLLYAAKLAGRNCVMA 571


>gi|288549571|ref|ZP_05967457.2| putative GGDEF domain protein [Enterobacter cancerogenus ATCC
           35316]
 gi|288318420|gb|EFC57358.1| putative GGDEF domain protein [Enterobacter cancerogenus ATCC
           35316]
          Length = 471

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 80/273 (29%), Positives = 128/273 (46%), Gaps = 28/273 (10%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVI----FIANIFLF--YIGLTPFYGL 61
           F++IW          +    +++ + F ++ I T I    +++  FL   YIG T    L
Sbjct: 206 FMAIW------NRVINIILIVLWVATFVTLMIITRIRNMFWVSGNFLSLCYIG-TLLMML 258

Query: 62  EYILVENLSLV-------IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
                E++S         I ++ I  +L Y   ++ +E  + Y +  Q S  D L+ L N
Sbjct: 259 IAGQAEDISWYRARLFETIATLLIIFVLLYDVFNLYRESHLKYQQSYQNSIRDPLTRLYN 318

Query: 115 HSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            S F  +L       S  + +S+V  D+D FK+IND +GH  GDKV+ F++  L+     
Sbjct: 319 RSYFYDALNHSLRSASRTQPVSVVVSDLDRFKRINDCYGHLQGDKVLKFVARLLMDSVRP 378

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAER 227
                R+GGEEF      +    A  +A  +R+ + +   N S       ITIS G+   
Sbjct: 379 DDIAARIGGEEFVLMLANTPPDTARQVAERIREKLSSFDKNSSEEQLPEPITISMGVFTA 438

Query: 228 CHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
              E    T +  AD+A+Y AK++GRNRVV +S
Sbjct: 439 TSAETTAETCVECADKAMYEAKETGRNRVVVYS 471


>gi|171059397|ref|YP_001791746.1| diguanylate cyclase [Leptothrix cholodnii SP-6]
 gi|170776842|gb|ACB34981.1| diguanylate cyclase [Leptothrix cholodnii SP-6]
          Length = 636

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 86/173 (49%), Gaps = 8/173 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           EL     ++SQ    D L+ + N    +       + +   +  L+I   DID FK++ND
Sbjct: 464 ELEAELRQLSQEVCTDQLTQIANRRGLLRCFDAERARVERESADLAIGLLDIDNFKRLND 523

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH  GD+ + FL+ ++         + R GGEEF     G+   EA  +   +++++ 
Sbjct: 524 SLGHQTGDEALKFLARRVGEALRPTDTLARYGGEEFVVLLPGTPSDEAQRVLTRVQRLL- 582

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++++ +  G    +T SAG+      E I   + RAD+ALY AK++G+NR   
Sbjct: 583 SAELFMYEGKQSFVTFSAGVTLYRPSEAIEVALQRADEALYEAKRTGKNRTCV 635


>gi|170750974|ref|YP_001757234.1| diguanylate cyclase [Methylobacterium radiotolerans JCM 2831]
 gi|170657496|gb|ACB26551.1| diguanylate cyclase [Methylobacterium radiotolerans JCM 2831]
          Length = 281

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 8/178 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQI 142
           ++        + +L+  D L+  L+   F+           S +   S++  D+D FKQI
Sbjct: 99  IEHRARLEAELRRLADTDHLTDALSRRRFLQICEEVWARTQSGDTPSSVLMLDLDRFKQI 158

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD V+    +           +GR+GGEEFA    G+   EA  +A  LR  
Sbjct: 159 NDRYGHSAGDTVLKAFVETCRDSLRAVDVIGRMGGEEFAILVTGTVLAEAQAIAEQLRHA 218

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +    + +  GP + I++S G+A     E +S  + RAD ALY AK +GR+ V C ++
Sbjct: 219 VAQRPVRLEHGP-LPISVSIGLAAFGPSESMSATLRRADAALYAAKHAGRDCVRCAAE 275


>gi|156933994|ref|YP_001437910.1| hypothetical protein ESA_01820 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532248|gb|ABU77074.1| hypothetical protein ESA_01820 [Cronobacter sakazakii ATCC BAA-894]
          Length = 480

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/256 (23%), Positives = 110/256 (42%), Gaps = 23/256 (8%)

Query: 24  PHTFMIYFSIFFSI----FIATVIFIANIFLFYIGLTPFYGLEYILVENL---SLVIISI 76
           P   +I+ ++ + +    F+     +  I L   G+      +  +   +    L + +I
Sbjct: 217 PVAALIWCAVRYPLNVTCFLTLCTGVLQIILVSAGIIEISSAKLSVGSQMFSTRLGVATI 276

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKL 129
            I   +  +S S +  L     +IS+ +  D L+G+ + S    +L             L
Sbjct: 277 AICPAIVAVSVSAINSLLA---QISRRANYDHLTGVYSRSGLFEALARDDANPALAGRPL 333

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            ++  D+D+FK INDN+GH  GD V+A    +L  + G    V R+GGEEF       + 
Sbjct: 334 CVMLMDLDHFKSINDNYGHECGDAVLAVFGQKLREITGEAGRVARMGGEEFVVVCPNITL 393

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-----KEPISTIIYRADQAL 244
             A  LA  +R+ +    + +  G S+  +IS G+           +  + ++  AD  L
Sbjct: 394 DRACHLAETIRQQVAGQPV-VCEGKSVSFSISIGLGYDAAPRERVSDAFTRLMREADTLL 452

Query: 245 YVAKKSGRNRVVCFSD 260
           Y +K+ GRNR     +
Sbjct: 453 YQSKRQGRNRTSVDDE 468


>gi|157375627|ref|YP_001474227.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157318001|gb|ABV37099.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 341

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 6/177 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQ 141
           +   ++ L +   +  +    D L+G+LN  AF       L    +   ++  DID+FK 
Sbjct: 161 AQQEIEALKLQLKQSEKDVLFDALTGILNRRAFDDDFKGILNQSPDGTCLILVDIDHFKA 220

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            NDN+GH +GD+V+  ++ +L       + + R GGEEFA     +  + A  LA  +R+
Sbjct: 221 FNDNYGHQLGDQVLKAVAKRLSEACRDGVKIYRYGGEEFAVLLPNNQLRTARHLAEAMRR 280

Query: 202 IIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +E   +          +IT S G+A+       + +I +AD+ LY AK+ GRNRV+
Sbjct: 281 SLEKVSLKDRRKDTRINNITASFGVAQWQPSMTHAQLIEQADKLLYEAKRLGRNRVM 337


>gi|197119088|ref|YP_002139515.1| response receiver-modulated diguanylate cyclase [Geobacter
           bemidjiensis Bem]
 gi|197088448|gb|ACH39719.1| response receiver-modulated diguanylate cyclase [Geobacter
           bemidjiensis Bem]
          Length = 314

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 9/175 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL  +   + +L+  D L+ L NH  F  +          Y ++ S++F D+D FK+ ND
Sbjct: 139 ELKEANLALKELAVHDGLTALYNHRYFEEAFVLEVARSKRYGKQCSLIFMDVDNFKRYND 198

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GHP GD ++  L+  +           R GGEEF      + ++ A  +A +LR+ + 
Sbjct: 199 TNGHPQGDALLKTLAQLMTTHLRICDTAARYGGEEFVLLLPETPKEAALGVAEELRRRVA 258

Query: 205 NSQINISSGPSIH-ITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
                      +  +TIS G+A           ++  ADQ LY AK SG+N VV 
Sbjct: 259 EHPFPGGETQPLGKVTISIGVAAYPRDGMDAPELLDFADQLLYKAKNSGKNMVVW 313


>gi|78063420|ref|YP_373328.1| RNase II stability modulator [Burkholderia sp. 383]
 gi|77971305|gb|ABB12684.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. 383]
          Length = 667

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 19/192 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDID 137
           SG  + E   +  R+S+L+  D L+GL N  A    + +           ++ I+F D+D
Sbjct: 218 SGIDITEERSAQQRLSELANTDVLTGLPNRHAISERIHAAIAAETAATRGQVGILFLDLD 277

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAA 193
            FK++ND++GH  GD+++  +S  +     +   + RLGG+EF       +    E  A 
Sbjct: 278 NFKRVNDHYGHITGDRLLQDVSAIISGCLPSGATLARLGGDEFLVLFEHGTRPLLEATAQ 337

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
           I+   LR  I    +       ++ + S GIA    H + + T+I  AD A+YVAK+ G+
Sbjct: 338 IILERLRTPIHLGLM------EVYTSCSIGIAMHPQHGDSLETLIRSADTAMYVAKEEGK 391

Query: 253 NRVVCFSDIENN 264
           +    FS   N 
Sbjct: 392 HTYRVFSLEMNQ 403


>gi|16124908|ref|NP_419472.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15]
 gi|13421870|gb|AAK22640.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15]
          Length = 694

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/189 (29%), Positives = 79/189 (41%), Gaps = 19/189 (10%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + +       I  L+  D L+GL N + F               E   ++  D+D+FK 
Sbjct: 255 DITDRRRQTEAIETLAFKDPLTGLPNRTLFQHRFQEAVSASETLGEMFGLIMIDVDHFKD 314

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAILA 196
           IND  GH  GD ++  L+  L   F T   V RLGG+EFA    G   +         L 
Sbjct: 315 INDTLGHDAGDALLKRLAGMLQHAFRTGDTVARLGGDEFAVILRGLHGEADMTRPIEALQ 374

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
           + LR+ I+        G S   + S G A         + +I  AD ALY AK++GRNR 
Sbjct: 375 DLLRRPIQ------HGGRSFTASASIGAALHGDLDADPAHMIKNADIALYRAKEAGRNRS 428

Query: 256 VCFSDIENN 264
           + F     +
Sbjct: 429 IVFEPSMRS 437


>gi|332305205|ref|YP_004433056.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172534|gb|AEE21788.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 590

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 83/204 (40%), Gaps = 25/204 (12%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           +     +L    + + QL+  D L+GL N    +  L  +       N + +++F D+D 
Sbjct: 126 ASQAFADLVTQQHELHQLAFYDSLTGLPNRQYLMQDLQRFLAMAERNNYQAAMLFIDLDR 185

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR--------------LGGEEFAAAA 184
           FK+IND  GH  GDK++  ++ +L           R               GG+EF    
Sbjct: 186 FKRINDTMGHSYGDKLLRKVAHRLQANLRDSDTFARVGSEQSSQEPQLSSFGGDEFTIFL 245

Query: 185 LG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQ 242
              +   EA ++A  + +    S         + +T S GI+      +   T++  AD 
Sbjct: 246 SRLNDPNEAMLVAERVIRSF--STPFQLEQFEVVVTPSIGISMFPNDGDNAETLLKNADT 303

Query: 243 ALYVAKKSGRNRVVCFSDIENNTC 266
           A+Y AK+SGR     + D  N   
Sbjct: 304 AMYFAKQSGRCCYKFYQDSMNAKA 327


>gi|325293539|ref|YP_004279403.1| diguanylate cyclase [Agrobacterium sp. H13-3]
 gi|325061392|gb|ADY65083.1| diguanylate cyclase [Agrobacterium sp. H13-3]
          Length = 380

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 104/220 (47%), Gaps = 9/220 (4%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
           IA +  + ++ +    L P Y    ++     +++++  I+L +  +          S  
Sbjct: 163 IAGISGLISLSVAKSVLLPQYAAIDLVNAFFLIIMLNFAIALFVMMLVA------ERSER 216

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-SIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           ++  L+  D L+G+ N   F  ++        + +  DID+FK IND FGH VGD V+  
Sbjct: 217 KLLVLANTDPLTGVKNRRFFFQAMPGVPGPNDAAMLLDIDHFKSINDRFGHAVGDSVLQE 276

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           ++ ++         + R GGEEF     G+  Q+A ++   +R  I  ++++   G  + 
Sbjct: 277 VAKRIGGSIRGGDVLARYGGEEFIIFLPGAGVQKACMIGERIRDAIAITEVDC-GGLRVG 335

Query: 218 ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
           +TIS G+A        + T+   AD+ALY AK  GRN V 
Sbjct: 336 VTISIGVATSGDMRCDLQTLAEMADRALYRAKTDGRNCVR 375


>gi|229014577|ref|ZP_04171693.1| GGDEF domain protein [Bacillus mycoides DSM 2048]
 gi|228746729|gb|EEL96616.1| GGDEF domain protein [Bacillus mycoides DSM 2048]
          Length = 343

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 68/239 (28%), Positives = 114/239 (47%), Gaps = 18/239 (7%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI- 85
             + + +  SIF   + F  N++   I + P     YIL +++ +V++ +   ++  YI 
Sbjct: 109 ITLIWRMKISIFTKWIWF--NVYSLSILILPL----YILFKDIYVVVLYLICCIVAAYIT 162

Query: 86  --SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
             S S + +    +  +   + ID L+ L N   F   +  +       N+ L ++  DI
Sbjct: 163 FVSASYVLQSNELFQTMKHYATIDALTNLGNVRQFDFEMNRHIGSKHMKNDSLCLLLIDI 222

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK +ND +GHP GD+V+  L   L+     P  V R GGEEFA             + 
Sbjct: 223 DHFKYVNDTYGHPAGDEVLKQLGRILLENAPFPNLVFRKGGEEFALLLPKKRVAFGNRIG 282

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +R  +E     + +G  I IT+S G++E   K+     I  AD ALY +K++GRN+V
Sbjct: 283 EQIRLAVEKHSFQLQNGEKIKITVSVGLSEY--KKSPEQFIQSADDALYYSKRNGRNKV 339


>gi|256828463|ref|YP_003157191.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
 gi|256577639|gb|ACU88775.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
          Length = 280

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 10/175 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L  L      ++ L  +D L+GL N   F  ++         +   L++   D+D FK +
Sbjct: 70  LVRLKEHIEHLTVLQGLDPLTGLANRRGFDQTMVMEVERSSRFKTPLTLCIMDLDNFKAV 129

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GHP GD VI  ++  L+          R+GGEEFA    G+    A  L   ++ I
Sbjct: 130 NDTYGHPCGDDVIKTVASILLNEMRMIDTAARIGGEEFALLLPGTGLARALKLLQRIQSI 189

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
           I+ ++I       + +T+S G+A    K       ++  AD+ALY AK++G+NR+
Sbjct: 190 IQATRITCGD-ARLTMTMSMGVASYRGKLTPDPVKLLAEADKALYRAKRTGKNRI 243


>gi|120556594|ref|YP_960945.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120326443|gb|ABM20758.1| periplasmic/7TM domain sensor diguanylate cyclase [Marinobacter
           aquaeolei VT8]
          Length = 935

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 90/199 (45%), Gaps = 13/199 (6%)

Query: 69  LSLVIISITISLLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--- 122
             ++I  + I+ LL Y +   G + +EL  +   +S+LS  D L+ L N S F       
Sbjct: 727 WQILIAGLVITALLVYWNRKLGRLNRELADANEALSRLSVTDNLTQLGNRSYFDREFPHS 786

Query: 123 ----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGG 177
                 +    ++   D D+FK+IND +GH  GD+ +  L+D +   F      + R GG
Sbjct: 787 FQWCQRHKTGFAVAMVDADHFKKINDTWGHEAGDQCLQALADVMREHFRRETDRLSRFGG 846

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPIST 235
           EEF          +        R  + N Q +   G +I +T+S G+A          + 
Sbjct: 847 EEFIIFTSYEDASDIMERLERFRAAVANRQCDTCQGSAIELTVSIGLAYGVPKPTGSPAE 906

Query: 236 IIYRADQALYVAKKSGRNR 254
            +  ADQALY AK +GRNR
Sbjct: 907 YLRLADQALYAAKGNGRNR 925


>gi|119476912|ref|ZP_01617193.1| hypothetical protein GP2143_10177 [marine gamma proteobacterium
           HTCC2143]
 gi|119449719|gb|EAW30956.1| hypothetical protein GP2143_10177 [marine gamma proteobacterium
           HTCC2143]
          Length = 316

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/201 (31%), Positives = 95/201 (47%), Gaps = 17/201 (8%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------ 124
           L ++ + I  L+  I  ++L +  I+       +  D L+G  N  A  ++L        
Sbjct: 116 LQMLELLIGSLICPIRNALLYQDAIAS------ALRDPLTGTGNRMAMENTLTREVAIAL 169

Query: 125 -YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM---FVGRLGGEEF 180
            + + LS++  DID FK+IND +GH  GD V+  ++  L              R GGEEF
Sbjct: 170 RHKQPLSMLVVDIDAFKKINDIYGHAAGDCVLKNVARTLTQCSRDTDSTYRAYRFGGEEF 229

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                 ++   A ILA  +R+ IE   I      SIHIT S G++     E  S +  RA
Sbjct: 230 VLLLNNTNRDGAVILAERIREGIEEM-ITTCEEKSIHITASIGVSTLRTGESASQLFDRA 288

Query: 241 DQALYVAKKSGRNRVVCFSDI 261
           D+ALY AK  GRN+V+    +
Sbjct: 289 DKALYTAKDDGRNQVISADPV 309


>gi|90420816|ref|ZP_01228722.1| putative response regulator with GGDEF domain [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335107|gb|EAS48868.1| putative response regulator with GGDEF domain [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 455

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 12/210 (5%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G+   +V   S+ +++   + LL     + + EL  +  R+ +L+R D L+G+ N     
Sbjct: 231 GIGATVVARRSMTLLA-QKAFLLDLRDKTRVAELAAANGRLEELARTDPLTGVANRRWMT 289

Query: 120 SSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFV 172
             L             +++  DID FK +ND  GH  GD+ +  ++  +          V
Sbjct: 290 EILDALWSAQRTRVSGALLMCDIDDFKNLNDRLGHGEGDRCLIEVAKLIGDCVRRDGDKV 349

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKE 231
            R GGEEF         + A + A  +R+ I ++ + N  S  +  +TIS G+A     +
Sbjct: 350 ARYGGEEFLVLLRDVDTRAALVTAERIRRRIGDAGLANPGSRVASRVTISIGVAALEPGD 409

Query: 232 ---PISTIIYRADQALYVAKKSGRNRVVCF 258
                  +  RAD ALY+AK+SGRNRVV +
Sbjct: 410 GDVTPQQLQERADAALYLAKQSGRNRVVLY 439


>gi|51246161|ref|YP_066045.1| hypothetical protein DP2309 [Desulfotalea psychrophila LSv54]
 gi|50877198|emb|CAG37038.1| hypothetical protein DP2309 [Desulfotalea psychrophila LSv54]
          Length = 660

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 99/209 (47%), Gaps = 16/209 (7%)

Query: 63  YILVENLSLVIISITISLLL-------GYISGSILKELFISYNRISQLSRIDCLSGLLNH 115
           YI  ++  ++ +S+TIS +          I    + E  ++  ++   +  D ++G  N 
Sbjct: 447 YIPQKDGQIIPVSLTISPMYNQGTVTGAIIIFQDIAERLLAEEQLKLAASHDSMTGAKNR 506

Query: 116 SAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
           +         I          + +  DIDYFK+IND++GH VGD+V+  +S  +      
Sbjct: 507 AELERLMDLEIEQSARKKTACTFLMIDIDYFKKINDSYGHLVGDQVLKEMSHYIRSTLRK 566

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
               GR GGEEF         Q +  +A  LR  I+ + +  ++     +T+S G+A   
Sbjct: 567 SDIFGRYGGEEFVIILPQEDLQHSRKIAERLRLGIKENSLQ-NNTLKKAMTVSIGLASYP 625

Query: 229 -HKEPISTIIYRADQALYVAKKSGRNRVV 256
            H      I+ +AD+ALY+AKK GR+R+V
Sbjct: 626 EHGRTSKDILLQADEALYIAKKQGRDRIV 654


>gi|300864011|ref|ZP_07108917.1| PAS fold family (modular protein) [Oscillatoria sp. PCC 6506]
 gi|300337988|emb|CBN54063.1| PAS fold family (modular protein) [Oscillatoria sp. PCC 6506]
          Length = 966

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 88/205 (42%), Gaps = 31/205 (15%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFK 140
            +    ++  ++   +  D L+GL N + F+  LG   E          +++F D+D FK
Sbjct: 502 DITVRKMAEEKLLHDALHDTLTGLPNRALFMDRLGHAIELGKRRPEILFAVLFIDLDRFK 561

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
            +ND+ GH VGD+++  ++ +L +   T   V RLGG+EFA          +A I+A  +
Sbjct: 562 VVNDSLGHLVGDQLLIAIAQRLKICLRTGDTVARLGGDEFAILLENIKDASDATIIAERV 621

Query: 200 RKIIENSQINISSGPSIHITISAGI-----AERCHKEP--------------ISTIIYRA 240
           +   E +     S   I  + S GI     A     E                  ++  A
Sbjct: 622 QN--ELAAPFHLSAHKIFSSASIGIVCSGLAPFRDGEATTLPHLQCPILYDRPEDLLRDA 679

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D A+Y AK  G+ R   F D+  +T
Sbjct: 680 DAAMYHAKAQGKARHEIF-DMSMHT 703


>gi|256377498|ref|YP_003101158.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Actinosynnema mirum DSM 43827]
 gi|255921801|gb|ACU37312.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Actinosynnema mirum DSM 43827]
          Length = 673

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 7/178 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQI 142
           +   + +    ++ +  L+  D L+GL N  A    L          S++  D+D FK +
Sbjct: 222 TAHDITQSRRVHDELLALAEQDPLTGLANRRAVTRELERRLATGGTGSLLLLDLDNFKDV 281

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH VGD+++  L+  L         +GRLGG+EFA     +   +AA +A  LR  
Sbjct: 282 NDLRGHAVGDRLMRALAAALRTRLEPEHLIGRLGGDEFAVVLPDTGPADAARVAEHLRDT 341

Query: 203 IENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I    +   + P+   TIS G+A      +    ++  AD ALY +K +GRNRV  + 
Sbjct: 342 IARLPL---ATPATRTTISTGVAGYGTSGDTWELVLANADLALYASKAAGRNRVTVYE 396


>gi|167623847|ref|YP_001674141.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167353869|gb|ABZ76482.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 926

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 95/200 (47%), Gaps = 15/200 (7%)

Query: 71  LVIISITISLLLGYISGSILK----ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY- 125
           LV + +++ +++G ++   L+        + NR++  ++ DCL+ L N +     +    
Sbjct: 728 LVFVILSLIIVIGVLANQRLRKEVARRIDAENRMAHFAKHDCLTQLPNRALIDDRIEQAI 787

Query: 126 ------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                   + +++F D+D FK +ND FGH  GD+ +  +S+ LV        VGRLGG+E
Sbjct: 788 LLHSRDTAQFAVIFIDLDGFKPVNDKFGHHAGDQFLVHVSEVLVKCIRRSDTVGRLGGDE 847

Query: 180 FAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTII 237
           F        + +    +A +L   +   Q  + +   + ++ S GIA      + I T++
Sbjct: 848 FVIILNNINNLKSVYDIAENLLHSLA--QPFMINDQPMSVSASIGIAIYPKDGDCIDTLL 905

Query: 238 YRADQALYVAKKSGRNRVVC 257
             AD+ +Y AK +G     C
Sbjct: 906 KTADRQMYRAKNAGGGAYRC 925


>gi|114775693|ref|ZP_01451261.1| GGDEF domain protein [Mariprofundus ferrooxydans PV-1]
 gi|114553804|gb|EAU56185.1| GGDEF domain protein [Mariprofundus ferrooxydans PV-1]
          Length = 450

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 92/172 (53%), Gaps = 10/172 (5%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFG 147
           ++++R+ +L+ +D L+ + N    ++ L     +       L ++ FDID+FK++ND +G
Sbjct: 279 LTHDRLQKLAALDPLTAIYNRRFGLARLNEEFSRAVRTTGHLGVMMFDIDHFKKVNDTYG 338

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD+V+  ++            + R GGEEF      +S++ +  +   +R ++E + 
Sbjct: 339 HLVGDRVLIQVTKTARAALREGDILMRYGGEEFLVILPVASKENSRDIGERMRHMVEETS 398

Query: 208 INISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVC 257
           +       IH+TIS G+      E      ++  AD+ALY+AK+SGRN+V+ 
Sbjct: 399 VT-DGDQVIHVTISIGVTSYPELEVAGEQDLVKCADEALYLAKESGRNKVIV 449


>gi|297538018|ref|YP_003673787.1| diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297257365|gb|ADI29210.1| diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301]
          Length = 710

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 10/170 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
              S+L+ +D L+ L N  A +  L +   +       L++ F D+D FKQIND  GH V
Sbjct: 263 QETSRLALVDTLTQLPNRRALMQHLEAATRRCDRNGASLAVAFIDVDNFKQINDTLGHQV 322

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQIN 209
           GD  +  ++ +LV        V R+GG+EF A        ++   +   +   +  S   
Sbjct: 323 GDLALQKVARRLVTAVRGCDEVARIGGDEFIAIIEEVDSYEDCITVIERMVSAVRES--C 380

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +   +H++ISAG+A       I  +I  AD A+Y AKK G+N+   F 
Sbjct: 381 TINHSEVHLSISAGVAIYPKDGNIQQLISAADTAMYRAKKDGKNQYRFFD 430


>gi|94263998|ref|ZP_01287799.1| GGDEF:EAL [delta proteobacterium MLMS-1]
 gi|93455591|gb|EAT05776.1| GGDEF:EAL [delta proteobacterium MLMS-1]
          Length = 885

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 86/198 (43%), Gaps = 10/198 (5%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------ 120
           +++  +++   +S LL  +    +K +    + +   +  D L+ L N   F        
Sbjct: 425 DSIYHIVLDSVLSTLLNLVGS--VKAISKYTHDLEYYATRDPLTQLHNQRMFWELLGYEV 482

Query: 121 -SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                ++   +++  D+D FK +ND +GH  GD ++  L++ L        FV R GG+E
Sbjct: 483 GRAQRHDYPFALIMIDMDNFKTVNDQYGHAFGDMILQQLAEALRQAVRDGDFVARYGGDE 542

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIY 238
           F      ++ ++A  +A  + K I    +    G  +  T+S G+A    H +    +  
Sbjct: 543 FTILLPETTREQALTVAERIIKSISGMGVLTPDGVRVQATVSLGLAMYPEHGKSAKDLFL 602

Query: 239 RADQALYVAKKSGRNRVV 256
            AD  +Y  K  G+N + 
Sbjct: 603 VADNMMYKVKGEGKNNIA 620


>gi|313106069|ref|ZP_07792327.1| hypothetical protein PA39016_000160006 [Pseudomonas aeruginosa
           39016]
 gi|310878829|gb|EFQ37423.1| hypothetical protein PA39016_000160006 [Pseudomonas aeruginosa
           39016]
          Length = 398

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 88/176 (50%), Gaps = 10/176 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           +EL     ++  L+  D L+GL N   F          +    + LS++  D+D+FK IN
Sbjct: 213 QELEEKNRQLEYLAGHDPLTGLFNRREFDQLVLMELARIARQPQPLSLLMVDLDHFKYIN 272

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHP GD+VI   ++ L     +   V RLGGEEF      ++EQ+A  LA  LR+ +
Sbjct: 273 DRYGHPFGDEVIRHAANLLRGNTRSSDSVARLGGEEFLLLLPDTAEQQARSLAEKLRERL 332

Query: 204 ENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
           E + +    G  + +T S G+A            +   ADQALY AK SGRNRV  
Sbjct: 333 EGTPLATQDGV-LCLTASFGVASLDGGGQASYEQLYSAADQALYRAKSSGRNRVEV 387


>gi|218962133|ref|YP_001741908.1| hypothetical protein CLOAM1875 [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730790|emb|CAO81702.1| hypothetical protein CLOAM1875 [Candidatus Cloacamonas
           acidaminovorans]
          Length = 321

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 92/183 (50%), Gaps = 10/183 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           ++ KEL  +   + + ++ D L+GL N    +  L          N   ++   DID FK
Sbjct: 139 TLNKELSNANIGLKRQAKYDSLTGLYNRWVMLEMLNKEIISSLETNRGFAVGIADIDDFK 198

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD V+  L+   +        V R GGEEF      ++E  A I+   +R
Sbjct: 199 KVNDTYGHDCGDLVLVKLTQSFLQKIRVTDSVCRWGGEEFLFLFSETTESGAMIVVERIR 258

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCF 258
           K IE   IN   G  I +TI+ G++    ++ +    ++ RAD+A+Y  K SG+N+ V +
Sbjct: 259 KAIEELIINYK-GNQIKVTITIGVSFYNGQDHLDSKELVDRADKAMYEGKSSGKNKAVLY 317

Query: 259 SDI 261
           S+I
Sbjct: 318 SNI 320


>gi|82703806|ref|YP_413372.1| diguanylate cyclase [Nitrosospira multiformis ATCC 25196]
 gi|82411871|gb|ABB75980.1| response regulator receiver modulated diguanylate cyclase
           [Nitrosospira multiformis ATCC 25196]
          Length = 302

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 92/176 (52%), Gaps = 9/176 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFK 140
            + + +   + ++   +  D L+G+ N ++ +  L    ++ +       ++  D+D+FK
Sbjct: 115 RVAERILGLHQKLHIQATRDYLTGVWNRASIMDYLQKELKRGARQDICTSVMIADLDHFK 174

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GHP GD+++   + ++  V      VGR GGEEF   A G    EA  L   + 
Sbjct: 175 RINDTYGHPTGDEILQEAARRMSGVLRGYDRVGRYGGEEFLITASGCDWSEALALGERIC 234

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             I +   N  +G  I +T+S GIA  C +   I  +I  ADQALY AK++GRN+V
Sbjct: 235 SSIRSEPANSRAGQ-IDMTVSIGIATSCGQVNDIGELIAAADQALYQAKEAGRNQV 289


>gi|15605806|ref|NP_213183.1| hypothetical protein aq_265 [Aquifex aeolicus VF5]
 gi|2982975|gb|AAC06589.1| hypothetical protein aq_265 [Aquifex aeolicus VF5]
          Length = 338

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 56/160 (35%), Positives = 80/160 (50%), Gaps = 10/160 (6%)

Query: 107 DCLSGLLNHSAF------ISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GLLN          +  L  Y E   SI   DID FK+IND +GH  GDKV+  ++
Sbjct: 180 DPLTGLLNRRVLPYILRDVLELSLYTETPFSIAMVDIDNFKKINDTYGHLFGDKVLKEVA 239

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +        +V R GGEEF      +  ++A  +   +RK +EN+ I    G  I +T
Sbjct: 240 KIIKKNLRRSDYVFRYGGEEFLILMPSTELKDAVRILEKIRKEVENTPI-CWQGKEIRVT 298

Query: 220 ISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
           IS G+    +         I  AD+ LY+AK++G+NRVV 
Sbjct: 299 ISVGVCSDVYNGLKSPEEYIKCADEKLYLAKRTGKNRVVF 338


>gi|300869179|ref|ZP_07113775.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(S) [Oscillatoria sp. PCC 6506]
 gi|300332828|emb|CBN58973.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(S) [Oscillatoria sp. PCC 6506]
          Length = 1041

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 86/206 (41%), Gaps = 28/206 (13%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDI 136
           I    + E   +  ++   +  D L+ L N + FI  +G    +         +++F D+
Sbjct: 462 IIIRDITERKRAQQQLLHDAFHDVLTQLPNRALFIERVGQAIRRSKQQPDYKFAVLFLDL 521

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAIL 195
           D FK +ND+ GH VGD+++  ++ +L           RLGG+EF     G  S  +A I+
Sbjct: 522 DRFKVVNDSLGHSVGDQLLIAIAHRLTSCLHPSDTAARLGGDEFTVLLEGIQSLGDATII 581

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGI------AERCHKEP-----------ISTIIY 238
           A  +    E +Q     G  +  T+S GI           +E               ++ 
Sbjct: 582 AKKINH--EFAQPFNLEGHEVFTTVSIGIVFSQSEVSSTSEEDWKYMHCPMYNHPEDLLR 639

Query: 239 RADQALYVAKKSGRNRVVCFSDIENN 264
            AD A+Y AK  G+ R   F+   ++
Sbjct: 640 DADIAMYRAKALGKARHEVFNLAMHD 665


>gi|254254083|ref|ZP_04947400.1| hypothetical protein BDAG_03372 [Burkholderia dolosa AUO158]
 gi|124898728|gb|EAY70571.1| hypothetical protein BDAG_03372 [Burkholderia dolosa AUO158]
          Length = 520

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 9/185 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFF 134
             I    +     +   I  L+R D L+GL N     + L     +        L++++ 
Sbjct: 325 AVIIVEDVTARRETEQHIRHLARHDALTGLPNRHELHAQLKRMLARGQRQPGLALAVMYL 384

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND FGH  GD+V+  ++ +L           R+GG+EF  A   ++    + 
Sbjct: 385 DLDGFKPINDRFGHHAGDEVLMQVAQRLGGTLPHGELAARVGGDEFIVAIEDTTMPACST 444

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           LA  + + I ++   +S G ++   IS GIA          +I +AD ALY AK +G+  
Sbjct: 445 LAARIIERI-SAPYTLSIGETVSFGISIGIALDDGHGSPDELIRQADSALYDAKSAGKGI 503

Query: 255 VVCFS 259
              +S
Sbjct: 504 YRFYS 508


>gi|298505517|gb|ADI84240.1| sensor diguanylate cyclase, PAS domain-containing [Geobacter
           sulfurreducens KN400]
          Length = 300

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 8/171 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNF 146
               + + QL  +D L+G+ N       L         Y     ++  D+D+FK+IND+F
Sbjct: 130 LQRIDELQQLVFLDPLTGVANRRYIQMYLQSKFDEMFRYGWPFGVMLLDLDHFKEINDSF 189

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH +GD ++   +  L     +   +GR GGEEF A      E+    +A   R+++E S
Sbjct: 190 GHQMGDDLLKMAARTLRNAVRSYDLIGRWGGEEFIAIITNVREKRLCEMAERFRRLVEES 249

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + +    +  +T+S G       + + +++ R D+ LY +K +GRN V C
Sbjct: 250 SMTVGDNIA-RVTVSIGATLATSDDTVGSLLKRTDELLYRSKGAGRNCVTC 299


>gi|297539270|ref|YP_003675039.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera sp. 301]
 gi|297258617|gb|ADI30462.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera sp. 301]
          Length = 1036

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 99/243 (40%), Gaps = 22/243 (9%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG-------YIS-GSILKELFI 95
           F   ++L      P++       ++  L  +  TI+  +        YIS  + + +   
Sbjct: 526 FFKEMYLTLATGKPWHDEICNRTKDGHLYWVDTTITPFMADDGKPKSYISIRTDITQRKA 585

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148
           +  + + L+  D L+ L N    +  L          + + +++F D+D+FK++ND  GH
Sbjct: 586 AEEKNNILALYDTLTNLANRRLLLDRLKQALASSARSSRRGALLFLDLDHFKKLNDTLGH 645

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD ++  ++ +L         V R GG+EF       SE  A   A   + I E   I
Sbjct: 646 DVGDTLLQAVASRLTSCIREGDTVARFGGDEFVVLLADLSEH-AFEAAAQTKDIAEKMII 704

Query: 209 NISSGPSIHI-----TISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            ++    +       T S G      H+  I  ++ +AD A+Y +K  GRN +  F    
Sbjct: 705 TLNQPYQLKTNIYHNTASIGATLFVGHELEIDELLKQADIAMYQSKNEGRNTLCFFDPKM 764

Query: 263 NNT 265
              
Sbjct: 765 QEA 767


>gi|254485748|ref|ZP_05098953.1| diguanylate cyclase response regulator [Roseobacter sp. GAI101]
 gi|214042617|gb|EEB83255.1| diguanylate cyclase response regulator [Roseobacter sp. GAI101]
          Length = 467

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 88/199 (44%), Gaps = 24/199 (12%)

Query: 82  LGYISGSILKELFISYNRISQ-------LSRIDCLSGLLNHSAFISSLGSYNE------- 127
           +G    SIL     +  R+          +  D L+GL N    +S L    E       
Sbjct: 265 MGLRLASILNRKRKA-ERLRHCVNTGLRAAIYDPLTGLYNRRYAMSELARLIENAGKSDT 323

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
             +++  D+D+FK+IND FGH  GD V+   + +L         V R+GGEEF     G+
Sbjct: 324 HFAVMLADMDHFKRINDAFGHAAGDSVLVETARRLRSQLRPIDMVARIGGEEFLLVVPGT 383

Query: 188 SEQEAAILANDLRKIIENSQINISSGPS-IHITISAGI--------AERCHKEPISTIIY 238
           +  +A  +A  L +   ++   I S  + + ITIS G+              +  + +I 
Sbjct: 384 TALDATQVAERLCRTFRDAPFIIPSSNTAVTITISIGVCMSDSLTLTLPAQDDKAARLID 443

Query: 239 RADQALYVAKKSGRNRVVC 257
           +ADQALY AK  GRN V  
Sbjct: 444 QADQALYAAKSRGRNCVRL 462


>gi|148255842|ref|YP_001240427.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
 gi|146408015|gb|ABQ36521.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
          Length = 907

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYF 139
           +   + E   +  RI+ L+  D L+ L N + F   L          ++L++ + DID F
Sbjct: 451 THEDITERRKAEQRITHLAHYDALTELPNRTLFHERLKQELIHVSAGQRLALHYIDIDEF 510

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K +ND+ GH +GD+++  ++  L    G   FV RLGG+EFA    G  +  +   L  D
Sbjct: 511 KGVNDSLGHLIGDELLKSVAASLSTCVGEAGFVARLGGDEFAVVQTGIRNRGDVEQLIED 570

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   I   +  +  G  +    S G+A    H   +  I+  AD A+Y AK +GR     
Sbjct: 571 ILAAIRAPRDCL--GHQLTADASIGVALIPEHGTELDQIMKNADLAMYAAKGAGRRTWRF 628

Query: 258 FSDIEN 263
           F    +
Sbjct: 629 FEPEMD 634


>gi|186472688|ref|YP_001860030.1| diguanylate cyclase [Burkholderia phymatum STM815]
 gi|184195020|gb|ACC72984.1| diguanylate cyclase [Burkholderia phymatum STM815]
          Length = 359

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/260 (25%), Positives = 109/260 (41%), Gaps = 29/260 (11%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS----- 79
               + F++  +  I  ++ + NI    + L     + ++L   + LV +    S     
Sbjct: 90  WVVAMRFNVLPAALILAMVSMNNIGAGGLPLFARGVIAHVLGVLVGLVTVGFMFSPMSQM 149

Query: 80  --------------LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
                         L LG+ S  +  +L      +  LSR D L+ L N   +   L   
Sbjct: 150 PTILACLPFLLIYPLALGFTSYRLSLKLAQRTRELEHLSRTDGLTRLWNRRHWEGLLADE 209

Query: 126 NEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
            E+         ++  D+D+FK+IND  GHP GD V+   +D L   F     +GR GGE
Sbjct: 210 FERCRANRYASCLMLIDLDHFKRINDTMGHPAGDAVLQSFADLLRSHFRGGDSIGRYGGE 269

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTII 237
           EF     G++ +EA  +A  L + +        +      TIS GIA+         T +
Sbjct: 270 EFGVVLPGATLREAHTIAKVLVQRVREK--TKEASKECPCTISVGIAQLTDDLPDYHTWL 327

Query: 238 YRADQALYVAKKSGRNRVVC 257
              D++LY AK +GR+R+V 
Sbjct: 328 QEVDRSLYQAKATGRDRIVV 347


>gi|222053961|ref|YP_002536323.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. FRC-32]
 gi|221563250|gb|ACM19222.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. FRC-32]
          Length = 749

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 86/184 (46%), Gaps = 11/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + +  ++  +I +L+  D L+GL N +  +  L            ++ ++F D+D FK 
Sbjct: 286 DVTQRKVNEEQIRRLAYYDNLTGLPNRALLMDRLEQMLTKARRDKTRVVLLFLDLDRFKV 345

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLR 200
           IND  GH  GD+++  ++++L     +   + R+GG+EF     L   +   + LA  L 
Sbjct: 346 INDTMGHAHGDQLLVQVANRLRQALRSSDTLARIGGDEFVVLFTLEGPQLNVSPLAQHLI 405

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I  + +   SG  ++ + S GIA         ++++  AD A+Y AK+ G      +S
Sbjct: 406 DSI--TSVYPISGRDVYASTSIGIATFPDDGGDCNSLLRCADMAMYAAKEGGGKGYHFYS 463

Query: 260 DIEN 263
              N
Sbjct: 464 PEMN 467


>gi|237731361|ref|ZP_04561842.1| diguanylate cyclase [Citrobacter sp. 30_2]
 gi|226906900|gb|EEH92818.1| diguanylate cyclase [Citrobacter sp. 30_2]
          Length = 594

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 78/177 (44%), Gaps = 11/177 (6%)

Query: 93  LFISYNRIS----QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           L ++  R+     + +  D L+GL N      +L           E +S +  DID+FK 
Sbjct: 412 LALANQRLRDALLEKALYDPLTGLRNRHHLEDTLRTQMSQAVRNKEPISCLMIDIDHFKS 471

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH  GD VI  ++  +  V        R GGEEF      + EQ A   A ++  
Sbjct: 472 INDRFGHEAGDSVIKSIAATIQRVVHDSGMAFRYGGEEFLVLLANTDEQAANRFATEIYN 531

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +    +        H+ +S G+A          ++  AD ALY AK+ GR+R+V F
Sbjct: 532 GVRELSLRFGVSDIGHVDVSIGVASYPQHAQSDNLLRAADVALYRAKELGRSRIVSF 588


>gi|167032112|ref|YP_001667343.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas putida GB-1]
 gi|166858600|gb|ABY97007.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas putida GB-1]
          Length = 334

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  S   + +L   D L+GL N   F   L           ++LS++  D+DYFK  N
Sbjct: 156 QQLLDSNLMLQRLMNSDGLTGLSNRRHFDEYLELEWRRAMREQQQLSLLMIDVDYFKAYN 215

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D+FGH  GD+ +  +++ +            R GGEEFA     +S   A ++A  LR+ 
Sbjct: 216 DSFGHLAGDEALRQVAEAIRGSCSRPTDLPARYGGEEFALVLPNTSPGGARLVAEKLRQT 275

Query: 203 IENSQINISSG-PSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255
           +    I  ++      +T+S G+A +          +I  AD+ LY AK SGRN+V
Sbjct: 276 VLGLGIPHTAPVAESFLTVSIGLATQTPAVGSHCRQLISAADKGLYQAKNSGRNQV 331


>gi|150021404|ref|YP_001306758.1| diguanylate cyclase [Thermosipho melanesiensis BI429]
 gi|149793925|gb|ABR31373.1| diguanylate cyclase [Thermosipho melanesiensis BI429]
          Length = 1339

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/192 (32%), Positives = 89/192 (46%), Gaps = 17/192 (8%)

Query: 78   ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLS 130
            I  +L  +    +  +  S  R+   S +D L+ L     F   +  Y        E+LS
Sbjct: 1153 ILEILKIVEFGFITAIKSSLLRLR--SFLDPLTKLYTRYYFAEKIDEYFEKAKKFKERLS 1210

Query: 131  IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSE 189
            I+  D+D+FK+IND +GH +GD+V+  ++  L          VGR GGEEF      SS 
Sbjct: 1211 IIMCDLDHFKKINDKYGHLLGDEVLREIAKILKENVRRNNDIVGRYGGEEFIILLPNSSL 1270

Query: 190  QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVA 247
              A  +A  LRK IE             +T+S GIA       +    ++  AD ALY A
Sbjct: 1271 NYAKEIAERLRKKIEAI-----DKFPFKVTMSFGIASYPEVLVKTSDELVGYADDALYKA 1325

Query: 248  KKSGRNRVVCFS 259
            K+ GRNRV+ F 
Sbjct: 1326 KELGRNRVIVFE 1337


>gi|157370239|ref|YP_001478228.1| diguanylate cyclase [Serratia proteamaculans 568]
 gi|157322003|gb|ABV41100.1| diguanylate cyclase [Serratia proteamaculans 568]
          Length = 366

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/232 (24%), Positives = 104/232 (44%), Gaps = 6/232 (2%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS 88
           ++      +F  T+  IA   L+ I +  F+   + L  ++ L  +   + L + Y + +
Sbjct: 122 VWLRKSNRVFYLTIGVIA---LYRIAVVWFWVDMWTLWLDVLLYQVIAALCLAICYHALN 178

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDN 145
             +    +Y  +   +  D L+ + N ++    L    +      ++  D+D FK+IND 
Sbjct: 179 FKERHIHAYFSMRDKATTDSLTHISNRASVDYRLMLQQAERRPCGLMILDLDNFKRINDT 238

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD ++  +   L     +  FVGR GGEEF         +    +A  +R+ +E 
Sbjct: 239 YGHLAGDLLLTQMGQLLQNSVRSEDFVGRYGGEEFMVITASYDPKIIGGVAERIRRSVET 298

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +  G    IT+S G +       +   I   D+ALY AK+ G+N+VVC
Sbjct: 299 TIFLLDEGNETQITVSIGASLYLPGMAVDKAIEVTDEALYEAKRGGKNQVVC 350


>gi|289435516|ref|YP_003465388.1| GGDEF domain protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171760|emb|CBH28306.1| GGDEF domain protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 357

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 107/235 (45%), Gaps = 12/235 (5%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
           + +F    IA+   + N+ L            Y  +     V+IS+ I ++   +  +++
Sbjct: 129 WGVFTLNIIASGFVVVNLHLI------LAKESYFWINMTIFVVISLVIGVVSAGLMNNMI 182

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG----SYNEKLSIVFFDIDYFKQINDNF 146
           K     + +  Q S +D L+ L N   F   +         +++++  DID+FK IND +
Sbjct: 183 KS-KQLFQKYEQDSTLDYLTQLSNVRQFDEKINHVVDKSGRQVALLLIDIDFFKNINDTY 241

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD ++  L+  L           R GGEEF+   L  S +E    A  +RK  E  
Sbjct: 242 GHDAGDAILKQLAFILKESTTDGSEAFRNGGEEFSLILLDYSVEEGNYFAEHIRKETEEH 301

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              I SG ++ ITIS G++   ++      +   AD+ALY AK +GRNRV    +
Sbjct: 302 HFLIPSGQTVKITISIGVSGSHNEVTTSERLFKSADEALYKAKLTGRNRVCIADE 356


>gi|326317226|ref|YP_004234898.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374062|gb|ADX46331.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 1260

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 13/181 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            +    +  + + QL+  D L+GL N       L            +L + + D+D FK 
Sbjct: 808 DVTSQRVQEDMLQQLAHFDALTGLPNRVQLARRLEQAMAQARAGGWQLGVAYLDLDGFKP 867

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           +ND  GH  GD+++  ++ +L         V RLGG+EF        S  +A  L   LR
Sbjct: 868 VNDRLGHSAGDRLLVIVAGRLTRALRPVDCVARLGGDEFVLLMPELQSRADAEQL---LR 924

Query: 201 KIIENSQINISSGPS-IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           +++EN     + G   + +T S G            T++  AD A+Y AK+ GRNRV  F
Sbjct: 925 RLMENLAAPYTLGTERVTVTASVGYTLYPEDASDADTLLRHADHAMYGAKQGGRNRVQPF 984

Query: 259 S 259
            
Sbjct: 985 D 985


>gi|226947588|ref|YP_002802679.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium
           botulinum A2 str. Kyoto]
 gi|226842632|gb|ACO85298.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium
           botulinum A2 str. Kyoto]
          Length = 843

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 10/214 (4%)

Query: 61  LEYILVENLSLVIISITISLLLGYISG--SILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           LE I +E L     ++  S+ + Y +   + + E      +I  L+  D L+GL N    
Sbjct: 378 LEEIYIEELRKWFSAVVYSMEVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKI 437

Query: 119 ISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           I ++        NEK +++F D+D+FK IND  GH VGD V+  +S +  ++      +G
Sbjct: 438 IETINKTINNYENEKFAVLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKHKIG 497

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           RLGG+EF      +S  +A  LA  +   + N  I       + I  S GI+      + 
Sbjct: 498 RLGGDEFIIVQNITSISDAEKLACKICTTL-NHSIKYKED-DLFIGASIGISIYPEDGKD 555

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            ST++  AD A+Y AKK+G  +   +S   N   
Sbjct: 556 TSTLMKNADAAMYAAKKNGGYKYEVYSRSMNERA 589


>gi|153830180|ref|ZP_01982847.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|229529368|ref|ZP_04418758.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|148874320|gb|EDL72455.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|229333142|gb|EEN98628.1| GGDEF family protein [Vibrio cholerae 12129(1)]
          Length = 353

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 111/258 (43%), Gaps = 29/258 (11%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           IW C       F P  F I+ S  F+   + +  I    + Y          + L +  +
Sbjct: 98  IWSC-------FVPILFYIFTSARFAFVTSCLFLIIQSNIIY----------WQLQQTGA 140

Query: 71  LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSY 125
            +  S+ + L   YI   ++  ++    R     +  L+  D L+G  N  +  +S   +
Sbjct: 141 AISWSVLLHLCFAYIGIWVVAHVYEDNRRKIENSLLYLASRDPLTGAHNRLSLTTSFQHF 200

Query: 126 NE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   L ++  D+D+FK IND FGH  GDKV+   +     V G    + R+GGEEF
Sbjct: 201 ERFSDQTSLCLLVIDLDFFKSINDQFGHDTGDKVLIETTRLFTQVVGDNN-LYRIGGEEF 259

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                  S ++A  +   LR I+            + +TIS G+ E    + ++ ++  A
Sbjct: 260 CVTLFDQSLEQAGRVCERLRAIVSQHLFAFGE-KRVQVTISIGVCEYQAGDQLNDLLKFA 318

Query: 241 DQALYVAKKSGRNRVVCF 258
           D  LY AKK+GRN+V  F
Sbjct: 319 DMELYRAKKAGRNQVRLF 336


>gi|152995585|ref|YP_001340420.1| PAS/PAC sensor-containing diguanylate cyclase [Marinomonas sp.
           MWYL1]
 gi|150836509|gb|ABR70485.1| diguanylate cyclase with PAS/PAC sensor [Marinomonas sp. MWYL1]
          Length = 292

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 11/180 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
              + E      ++   +  D L+ L N +  +  L             LS++F DID F
Sbjct: 112 AHDITERKEMEAQLLYAAGHDDLTDLPNRTLLLDRLQASLTLAEREQVGLSVLFIDIDGF 171

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILAND 198
           K IND +GH VGD ++  ++ +L         VGRLGG+EF       +  E AA++A  
Sbjct: 172 KDINDGYGHAVGDLLLQLIAKRLGGCVRKSDTVGRLGGDEFLIILNKVNNAESAALVAEK 231

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
           +R  +  S++ +  G ++ ++ S GIA      +    ++  AD A+Y AK +G ++V+ 
Sbjct: 232 IRAAL--SEVFVVEGSTLSVSASIGIASYPENGKEPLDLVQSADHAMYQAKNNGGDKVIL 289


>gi|148657838|ref|YP_001278043.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Roseiflexus sp.
           RS-1]
 gi|148569948|gb|ABQ92093.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Roseiflexus sp. RS-1]
          Length = 796

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 93/189 (49%), Gaps = 12/189 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--------KLSIVFFDIDYF 139
           + + +  ++  R++ LS  D L+GL N +  +  L    +           ++  ++D F
Sbjct: 343 TDVTQRKLTEARLAYLSSHDPLTGLANRTLLLDRLQQALDRRNRERSLPCGVLLINLDRF 402

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           KQIND+ GH VGD+V+  ++ +L  +      V R GG+EFA       S ++   +A  
Sbjct: 403 KQINDSLGHAVGDEVLIAVAGRLKHITRPGDTVARFGGDEFAVVIDSPGSVEDIWRVAKR 462

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           ++  + N  + +    S+ + +S GIA    +     T+++ AD AL+ AK  GR+R+V 
Sbjct: 463 VQHTL-NHPVTVQD-HSLTVGVSIGIAVDDGRAKDAMTLLHNADTALHQAKARGRSRIVM 520

Query: 258 FSDIENNTC 266
           F +  +   
Sbjct: 521 FEEAMHTEA 529


>gi|24372515|ref|NP_716557.1| GGDEF domain-containing protein [Shewanella oneidensis MR-1]
 gi|24346517|gb|AAN54002.1|AE015537_10 GGDEF domain protein [Shewanella oneidensis MR-1]
          Length = 317

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 78/182 (42%), Gaps = 12/182 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           IS   + E  +    I+ LS  D L+GL N   F   L             LS++  D+D
Sbjct: 128 ISHVNITERKLLELEIADLSEHDPLTGLANRRLFTRFLHNEWRRSQREQTPLSLIMLDLD 187

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
            FK  ND+ GH VGD  +  +   L            R GG+EF      +  + A  +A
Sbjct: 188 NFKTCNDHLGHQVGDDSLQMVGRILKSFCQRPADLPCRFGGDEFVLILGNTDRENAQHIA 247

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNR 254
            ++ + I+     I     I ++ S G+A       E  + ++  AD ALYVAK+SG+N 
Sbjct: 248 GEICRAIKTLDFVIQD--DIRLSASIGVATLYANLGESETQLLTAADAALYVAKRSGKNC 305

Query: 255 VV 256
             
Sbjct: 306 FH 307


>gi|307944421|ref|ZP_07659761.1| diguanylate cyclase [Roseibium sp. TrichSKD4]
 gi|307772170|gb|EFO31391.1| diguanylate cyclase [Roseibium sp. TrichSKD4]
          Length = 723

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 96/197 (48%), Gaps = 17/197 (8%)

Query: 77  TISLLLGYISGSILKE-----LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
            I  +  +I   I ++     L  +  R+ Q++  D L+ + N  AF       I+    
Sbjct: 521 IIRQIADWIGNEIARQQDHDALIAAQVRLEQIASTDDLTKIFNRRAFFKLAARDIARFRR 580

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
                S++  D+D+FK+INDNFGH VGD V+   +D +          GR+GGEEF    
Sbjct: 581 TGTTFSVLMIDVDHFKKINDNFGHAVGDAVLKKFADIIAPSLRAVDIFGRIGGEEFCVIL 640

Query: 185 LGSSEQEAAILANDLRKIIE-NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQ 242
             +  + A ++A  LR+ IE N  ++    P    T S GI+E    +   ++I+ RAD 
Sbjct: 641 HNTGVENALLVAERLREEIEVNCMVSPMQKPP---TCSIGISEISATDVEFTSILQRADA 697

Query: 243 ALYVAKKSGRNRVVCFS 259
           ALY +K +GRN+    S
Sbjct: 698 ALYQSKHTGRNKSTIHS 714


>gi|302388191|ref|YP_003824013.1| diguanylate cyclase with PAS/PAC sensor [Clostridium
           saccharolyticum WM1]
 gi|302198819|gb|ADL06390.1| diguanylate cyclase with PAS/PAC sensor [Clostridium
           saccharolyticum WM1]
          Length = 511

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/202 (30%), Positives = 94/202 (46%), Gaps = 19/202 (9%)

Query: 73  IISITISLLLGYISGS--------ILKELFISYNRISQLSRIDCLSGLLNHSAFI----- 119
           +IS+ IS + G  +GS         +     + N +  ++  D L+GL N          
Sbjct: 313 MISVIISAVTGIYNGSEAVMINLFDVTAQKQAENALKNIAIKDELTGLYNRHFLESIIDE 372

Query: 120 --SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  Y+  LS    D+D+FK++ND +GHPVGD V+   ++ L        +  R+GG
Sbjct: 373 EFDRAKRYDIPLSAALLDLDHFKKVNDKWGHPVGDSVLKLTANLLQNNIRKSDYAIRIGG 432

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EE       +  Q A + A  +RK IE +   +        T S G+AER  +E  + + 
Sbjct: 433 EELLILMPNTDSQGAYVTAEKVRKAIEEAIHPVVG----RYTASFGVAERTMEEKYTDLY 488

Query: 238 YRADQALYVAKKSGRNRVVCFS 259
            R D+ALY AK +GRNRVV   
Sbjct: 489 SRIDKALYQAKNNGRNRVVIAD 510


>gi|296273930|ref|YP_003656561.1| ammonium transporter [Arcobacter nitrofigilis DSM 7299]
 gi|296098104|gb|ADG94054.1| ammonium transporter [Arcobacter nitrofigilis DSM 7299]
          Length = 605

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 77/170 (45%), Gaps = 7/170 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHP 149
           +L  S N +   +  D L+G+ N       +     N    +   DID FK +ND +GH 
Sbjct: 440 KLTTSNNNLRTKAYYDALTGIHNRRGLYERIKDKILNPNYCLAILDIDKFKLVNDTYGHD 499

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+++  L++ +           R GGEEF         Q A  +A  LR  I  ++  
Sbjct: 500 VGDEILKELANSVSKKIRQNDIFARWGGEEFILLLKTKDLQVAENIAEKLRIDISKTEFP 559

Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
                  HIT S GI+   + E     +   AD+ALY AK++GRNRV  F
Sbjct: 560 TVK----HITASFGISSFKNSEQSFEEVFKNADKALYQAKENGRNRVFTF 605


>gi|325981624|ref|YP_004294026.1| diguanylate cyclase [Nitrosomonas sp. AL212]
 gi|325531143|gb|ADZ25864.1| diguanylate cyclase [Nitrosomonas sp. AL212]
          Length = 637

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 8/179 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           + +L      +S+  + D L+G LN   F       I+ L      L     DID FKQ+
Sbjct: 443 INQLETQLQEMSEQVQEDHLTGALNRRGFDKAFEREITQLARSQGTLCFALLDIDNFKQL 502

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH VGD  + +L + +         + R GGEEFA     S  + A      +R+ 
Sbjct: 503 NDTHGHHVGDDALKYLVEAVKETVRRDDVISRYGGEEFAILLPNSGLKAAISTVARIRRY 562

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +   +  +     + IT SAG+A+    E   ++  R D+ALY AK++G+N++V   + 
Sbjct: 563 L-TKKFFLHGNNRLLITFSAGVAQYQPGESQESLFKRTDEALYFAKRNGKNQIVAAEEA 620


>gi|229119018|ref|ZP_04248360.1| Sensory box/GGDEF [Bacillus cereus Rock1-3]
 gi|228664409|gb|EEL19908.1| Sensory box/GGDEF [Bacillus cereus Rock1-3]
          Length = 800

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 98/205 (47%), Gaps = 10/205 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           +L   +++V I I   +   Y+    +  +    + I+ L+  D ++ + N   F   L 
Sbjct: 333 MLFWYVTIVPIMIEGQIFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELD 392

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     +K  +++ D++ FK IND  GH +GDKV+  ++ +        + + R+G
Sbjct: 393 RSIKRAQKTQDKFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIG 452

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           G+EFA      +EQ+   L   L +I E  +  I +  S ++++S GIA        I+T
Sbjct: 453 GDEFAIIVHNQTEQQLLDLCKTLFRITE--EPFIVNQHSFYLSLSIGIAVYPFGGINITT 510

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++  AD A+Y AK+ G N V  + +
Sbjct: 511 LLQHADIAMYSAKEKGNNAVCMYDE 535


>gi|330503632|ref|YP_004380501.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328917918|gb|AEB58749.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 406

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/259 (27%), Positives = 115/259 (44%), Gaps = 23/259 (8%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIAT----VIFIANIFLFYIGLT-PFYGLEY 63
           +++ + +     +   H  MI F++      A      + I N  +  + ++  F  + Y
Sbjct: 151 MTVAVLYGMRTFARDLHVEMIVFAVLIGGICALNAMKFVMIVNGGMAALDMSRGFQKIFY 210

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           I +  L+ V+    + L+L  ++           + +  L+  D L+ LLN    + +L 
Sbjct: 211 IYMSFLATVLPPCAVWLVLRRLT-----------DELRSLAAHDPLTRLLNRRGLMDALE 259

Query: 124 -----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                       ++  DID+FK IND  GH VGD V+  ++D L         + RLGGE
Sbjct: 260 AQFRLRAASPAYLLIVDIDHFKNINDTHGHKVGDLVLCHVADVLTSTARQGDLICRLGGE 319

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEPISTI- 236
           EF   AL + E  A  LA  +R  IE S +  S    +I  T + G+A+  +      + 
Sbjct: 320 EFVVVALETDEAGARQLAERIRAAIELSAVPASGEKQAIRCTATIGVADVFNAAQAFDLA 379

Query: 237 IYRADQALYVAKKSGRNRV 255
           +  AD ALY  K +GRNRV
Sbjct: 380 LQHADAALYRGKTAGRNRV 398


>gi|292492708|ref|YP_003528147.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291581303|gb|ADE15760.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 573

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/210 (29%), Positives = 92/210 (43%), Gaps = 12/210 (5%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           +  L   ++E L L +I+         +    LK+      R   L++ D L+GL N   
Sbjct: 102 WSTLVERILEILGLALIAFGFYRSQRLLQTQ-LKKTQAKETRSRHLAQYDALTGLPNRIL 160

Query: 118 FISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
               L           ++L+++F D+D FK IND+FGH +GD  +  ++  L    G   
Sbjct: 161 LQDRLAQSMAETLHSRQQLALLFLDLDRFKDINDSFGHEIGDAELIRVAGVLHGCVGPTD 220

Query: 171 FVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
            V R+GG+EFA          EAA+LA  +   I   + +   G  IH  +S GI     
Sbjct: 221 TVLRIGGDEFAIIQTHILDADEAALLAQRILGAIA--EPHRLQGHKIHNNVSIGITLFPS 278

Query: 230 KEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
             P    ++  AD ALY AK  GRN    +
Sbjct: 279 DAPTAKQLLKNADIALYHAKHEGRNNYQLY 308


>gi|254711485|ref|ZP_05173296.1| GAF/GGDEF domain protein [Brucella pinnipedialis B2/94]
 gi|256029885|ref|ZP_05443499.1| GAF/GGDEF domain protein [Brucella pinnipedialis M292/94/1]
          Length = 364

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 91/192 (47%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS--- 130
           L++G I+     I  +   +  R++  +  D L+   N       ++   S  + LS   
Sbjct: 170 LMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQSPNRRYIGKLLTQKKSARDGLSRDG 229

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSS 188
            ++  D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF      G+S
Sbjct: 230 FLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTS 289

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++  I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK
Sbjct: 290 KEQTDIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAK 348

Query: 249 KSGRNRVVCFSD 260
             G+NR   F +
Sbjct: 349 SKGKNRFEYFEE 360


>gi|134291167|ref|YP_001114936.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia vietnamiensis G4]
 gi|134134356|gb|ABO58681.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia vietnamiensis G4]
          Length = 913

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 82/176 (46%), Gaps = 7/176 (3%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           S L EL  S +++ + +R D L+GL N       I    +     +++F D+D  K IND
Sbjct: 473 SDLTELIDSRDQLVRQARRDALTGLPNRATLRELIEQAVAERRAFALLFMDVDRLKDIND 532

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH  GD+++  ++ +L    G    V R GG+EF A        +   LA  LR+I  
Sbjct: 533 SLGHGAGDRLLREVAQRLSGCVGEDGTVTRYGGDEFVAML--GRPDDGDRLAALLRRIAR 590

Query: 205 NSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +  +  G     + +S G+A          T++  AD A+Y AK  GRN V  F
Sbjct: 591 ALERPVQIGDAQSRVQLSIGVACYPADGLDAETLLKHADLAMYQAKARGRNTVELF 646


>gi|167033339|ref|YP_001668570.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1]
 gi|166859827|gb|ABY98234.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1]
          Length = 695

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 103/213 (48%), Gaps = 14/213 (6%)

Query: 64  ILVENLSLVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +L+  L+++ +++  S+L   L   +  + + L ++   ++QL+  D L+ L N +    
Sbjct: 220 VLITTLAVLAVALLTSVLDARLEARTAELARSLTLANQELTQLALHDTLTDLPNRTLLAD 279

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            +     K        +++F D+D FK +ND FGH +GD ++  ++ +L     +   + 
Sbjct: 280 RIEQAIAKVAEQGGCFALMFIDLDGFKPVNDAFGHHIGDLLLKAVAARLRGHLHSQDTLA 339

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           R+GG+EF          +A  +A  ++++   S+    +   + ++ S GI     + + 
Sbjct: 340 RIGGDEFVLLVELQEPNDAMDVA--VKQVNLVSRPFRVAEHDLQLSASLGIVLYPGNGQD 397

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
              ++  AD A+Y AK +G+N    F D+  N+
Sbjct: 398 QHELLRNADAAMYHAKSAGKNGYSFF-DVSMNS 429


>gi|158522168|ref|YP_001530038.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3]
 gi|158510994|gb|ABW67961.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3]
          Length = 372

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 97/245 (39%), Gaps = 16/245 (6%)

Query: 26  TFMIYFSIFFSI-FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
            F +    FF + F+A   +  ++ L  +           +   + L+ + +  S L  Y
Sbjct: 119 VFKLRLRTFFVLTFVAAGSYGTSMLLLAVNAPDAVDPHLEITRTVLLLAVLMWFSPLGYY 178

Query: 85  ISGSILK------ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           I     +      EL  +   I QL+  D L+ + N       L                
Sbjct: 179 IYNLRARAVQANVELKEALGTIEQLAVHDELTNVYNRRQMFRVLNREKAFADRTGMPFVA 238

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQ 190
              D+D FK IND +GH  GD ++   +  +        ++ R GGEEF     G+    
Sbjct: 239 CLMDLDDFKLINDTYGHLSGDTILRAFAQTIKHDIRREDYIFRYGGEEFLVVFTGTRCLA 298

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
            +A  A  LR           S   + +TIS G+      E I +++ RAD ALY AKK+
Sbjct: 299 NSADCAQRLRAATARLAFPDISDQ-VRVTISIGMTTYEPGETIDSLLSRADAALYKAKKN 357

Query: 251 GRNRV 255
           G+NRV
Sbjct: 358 GKNRV 362


>gi|119484350|ref|ZP_01618967.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Phytochrome (GAF) sensor [Lyngbya sp. PCC
           8106]
 gi|119457824|gb|EAW38947.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF &  EAL
           domains) with Phytochrome (GAF) sensor [Lyngbya sp. PCC
           8106]
          Length = 816

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 11/193 (5%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEK 128
           +T  L +     ++ ++L      +S ++  D L+ + N   F          +      
Sbjct: 619 LTGKLAIAIQQSALYEKLQNVNQELSYMAHYDQLTQIANRRYFDEYFEQEWSRIRREQVA 678

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGS 187
           LS++  D+DYFK  ND +GH  GD+ +  +++ +   V      V R GGEEF      +
Sbjct: 679 LSLILCDVDYFKHYNDTYGHLAGDQCLVQVAEAISRGVKRPADLVARYGGEEFVVILPNT 738

Query: 188 SEQEAAILANDLRKIIENSQINISSG-PSIHITISAGIA--ERCHKEPISTIIYRADQAL 244
           + + A  + + ++  I    +  S+   +  IT+S GIA      +     +I +AD+AL
Sbjct: 739 NMEGAIEVVHCIQNEILALNLPHSTSLTTKQITLSFGIACVYPASRSSRYDLINQADKAL 798

Query: 245 YVAKKSGRNRVVC 257
           Y AK +GRN    
Sbjct: 799 YQAKDAGRNGYAI 811


>gi|148656467|ref|YP_001276672.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Roseiflexus sp.
           RS-1]
 gi|148568577|gb|ABQ90722.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Roseiflexus sp. RS-1]
          Length = 921

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 88/190 (46%), Gaps = 11/190 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           S + +     +  +++  +  D L+GL N + F+  L              +++F D+D 
Sbjct: 473 SQTDITGRKQAEEQLAYGALHDALTGLPNRTLFMDRLSLALKRAQREKHLFAVLFLDLDR 532

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK IND+ GH  GD+++  ++ +L  V      V RLGG+EFA      ++ +EA  +  
Sbjct: 533 FKTINDSLGHAAGDELLIAVARRLESVLRPGDTVARLGGDEFAVMLDRLNAPEEAEWIVE 592

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            + + ++ + +++  G +++ T S G+A      E    +   AD A+Y AK   R R V
Sbjct: 593 RIHQALQ-APLSVR-GHTVYTTASIGLALGNEGYERPEELARDADTAMYQAKMQRRARHV 650

Query: 257 CFSDIENNTC 266
            F        
Sbjct: 651 VFDPDMRRKA 660


>gi|332142048|ref|YP_004427786.1| sensory box/GGDEF family protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552070|gb|AEA98788.1| sensory box/GGDEF family protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 798

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 5/176 (2%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQIND 144
           + + EL  S +++  L+  D L+G  N +   S + +YNE     SI+F DID FK IND
Sbjct: 353 TDVSELKSSESQLKYLAFTDALTGAGNRNLLNSIVETYNESCEPCSIIFIDIDEFKLIND 412

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD+++   + +          V R GG+EF      +  +    + + L   + 
Sbjct: 413 THGHEVGDEILRACASRFKAALRGDDTVIRFGGDEFVVVTSTTCHKLLKKMTSRL--SLS 470

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +I  ++     IT S G+A        + ++  AD A++ AK+ G+N VV FSD
Sbjct: 471 LKKIFKTTSGDFQITASIGLASSTESMSPTELLKNADIAMFSAKQGGKNGVVTFSD 526


>gi|295400131|ref|ZP_06810111.1| diguanylate cyclase with PAS/PAC sensor [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294977910|gb|EFG53508.1| diguanylate cyclase with PAS/PAC sensor [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 553

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 12/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
             + E      ++  L+  D L+ L N   F                 L++++ D+D FK
Sbjct: 375 RDVTEKINYEKQLEFLAFHDPLTKLPNRRLFFDIVDKSIIEAERTKSGLAVLYLDMDNFK 434

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
            +ND FGH +GD+++   + ++    G    V R+GG+EF     G  E+ +   +A  L
Sbjct: 435 DVNDTFGHDIGDELLKQFAKRIKKNVGEHNVVCRIGGDEFLVLLKGVKERTDVHQIAKRL 494

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              I   +       +I  T S GIA           +I+ ADQALY AK   +N    +
Sbjct: 495 STNIR--KPYRIKHLTIRTTASMGIAVSPIDGTTSKALIHHADQALYQAKMK-KNCYRFY 551

Query: 259 S 259
           S
Sbjct: 552 S 552


>gi|312197039|ref|YP_004017100.1| diguanylate cyclase [Frankia sp. EuI1c]
 gi|311228375|gb|ADP81230.1| diguanylate cyclase [Frankia sp. EuI1c]
          Length = 532

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 99/229 (43%), Gaps = 17/229 (7%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
              + +  +G++    L+    + +  +   +++SL+L     +       +       S
Sbjct: 312 ATTVGVLIVGISDLLALDQDYRDFIETIANQVSLSLMLARTYEAERTRAASAQRS----S 367

Query: 105 RIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
             D L+GL N ++F   L          + +++++F D+D FK +ND  GH  GD ++  
Sbjct: 368 LHDALTGLPNRTSFFRQLSRALLRSDQKSGRVAVLFIDLDGFKAVNDALGHREGDHLLRE 427

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSI 216
           ++D+L         V R  G+EFA      S   A   +A+ + + +  ++    S    
Sbjct: 428 VADRLRRTLRPSDAVARFAGDEFAVLCEDISTIGAVEAVASRIVEALTLAR----SRDRF 483

Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            +T S GIA    +      ++  AD A+Y AK+ GR R + + +   +
Sbjct: 484 VVTASVGIALSGPELLDPEELLNAADLAMYAAKRQGRGRYLFYEESMRS 532


>gi|153802398|ref|ZP_01956984.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|124122062|gb|EAY40805.1| GGDEF family protein [Vibrio cholerae MZO-3]
          Length = 353

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 111/258 (43%), Gaps = 29/258 (11%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           IW C       F P  F I+ S  F+   + +  I    + Y          + L +  +
Sbjct: 98  IWSC-------FVPILFYIFTSARFAFVTSCLFLIIQSNIIY----------WQLQQTGA 140

Query: 71  LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAF---ISSL 122
            +  S+ +     YI   ++  ++    R     +  L+  D L+G  N  +        
Sbjct: 141 AISWSVLLHFCFAYIGIWVVAHVYEDNRRKIENSLLYLASRDPLTGAHNRLSLTTSFQHF 200

Query: 123 GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
             +N++  L ++  D+D+FK IND FGH  GDKV+   +     V G    + R+GGEEF
Sbjct: 201 ERFNDQTSLCLLVIDLDFFKSINDQFGHDTGDKVLIETTRLFAQVVGDNN-LYRIGGEEF 259

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                  S ++A  +   LR I+            + +TIS G+ E    + ++ ++  A
Sbjct: 260 CVTLFDQSLEQAGRVCERLRAIVSQHLFAFGE-KRVQVTISIGVCEYQAGDQLNDLLKFA 318

Query: 241 DQALYVAKKSGRNRVVCF 258
           D  LY AKK+GRN+V  F
Sbjct: 319 DMELYRAKKAGRNQVRLF 336


>gi|150398003|ref|YP_001328470.1| PAS/PAC and Chase sensor-containing diguanylate
           cyclase/phosphodiesterase [Sinorhizobium medicae WSM419]
 gi|150029518|gb|ABR61635.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Sinorhizobium medicae WSM419]
          Length = 878

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 11/176 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQINDN 145
           EL  + +R+   +  D L+GL N       L   + ++      SI   D+D FKQIND 
Sbjct: 441 ELEAARHRMEFNALHDPLTGLPNRRFLDQILLDRSRRVEAGAKISIFHIDLDRFKQINDT 500

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD+++   +  L        FV R+GG+EF          E A +A+ +   IE 
Sbjct: 501 MGHAAGDEILKHAASLLRDNARQDDFVARIGGDEFVIIRASDGADEDAAMASRV---IEA 557

Query: 206 SQINIS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             + +        I +S GIA +    + +S ++  AD ALY AK+ GRNR   F+
Sbjct: 558 MSVPVRYEDQECRIGVSIGIAAQTDATDDLSQVLVNADIALYEAKRRGRNRQETFT 613


>gi|86357625|ref|YP_469517.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|86281727|gb|ABC90790.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
          Length = 583

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 86/180 (47%), Gaps = 10/180 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFK 140
           +I  +L  +  R+  L+  D L+GL N   F ++L   +         L+++  D+D+FK
Sbjct: 389 AIEDQLHQANTRLLALAEQDDLTGLSNRRCFDAALLREHNHARRDKRALALLMIDVDWFK 448

Query: 141 QINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GHP GD+ +  +   +            R GGEEF      +    A ++A  +
Sbjct: 449 PYNDLYGHPAGDECLKRVGAVIKDAARRPHDLAARYGGEEFVTLLPDTDVAGAMMVAERI 508

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
           R+ + + +I         +++S G       E      ++++AD+A+Y AK +GRN+V+C
Sbjct: 509 REAVLDLRIEHGGSAFRVVSVSIGAISLDWTELNDSDNLLHQADRAVYQAKGAGRNKVIC 568


>gi|89902786|ref|YP_525257.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
 gi|89347523|gb|ABD71726.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
          Length = 447

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 60/197 (30%), Positives = 93/197 (47%), Gaps = 22/197 (11%)

Query: 81  LLGYISGSILKELFISY--------------NRISQLSRIDCLSGLLNHSAFISS----- 121
           LL      + +EL  ++               ++ +LS  D L+ + N   F        
Sbjct: 250 LLASAFNRMSRELSQAHSALRRTNEQVQSQAAQLKELSVRDPLTQMFNRRYFDEQSALLY 309

Query: 122 --LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                +   +S++  D+DYFK IND+F H +GD+V+  ++  L     +   V R GGEE
Sbjct: 310 QQAMRHGWSVSVMVGDLDYFKSINDDFSHAIGDEVLRRVALILRKNTRSTDIVARYGGEE 369

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F  A   S+ Q+AAI    LR  IE         P + +T+S G+ +   +  I  ++  
Sbjct: 370 FVIAFPESTVQQAAIRCEALRAAIEQHTWQ-EVHPELRVTMSMGLCDDTKRGSIEKMLAA 428

Query: 240 ADQALYVAKKSGRNRVV 256
           AD+ LY AK+SGRNRVV
Sbjct: 429 ADEGLYEAKRSGRNRVV 445


>gi|89093904|ref|ZP_01166849.1| sensory box/GGDEF domain/EAL domain protein [Oceanospirillum sp.
           MED92]
 gi|89081790|gb|EAR61017.1| sensory box/GGDEF domain/EAL domain protein [Oceanospirillum sp.
           MED92]
          Length = 812

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 16/194 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
               + + E  +  + IS ++  D L+GL N +     L           +  +++F D+
Sbjct: 358 LFVATDISEQKMVQDHISYMANHDTLTGLPNRALLNDRLEQALAASRRSGDLNALMFIDL 417

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA------LGSSEQ 190
           D+FK IND+ GH VGD ++  +++ L+    +   V RLGG+EF          +    Q
Sbjct: 418 DHFKNINDSLGHGVGDLLLKKVAEILINEVRSCDTVARLGGDEFVILLQAFQSDVDQVTQ 477

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
           +   + + L  I+  SQ        + I  S G+       + +  ++  AD A+Y AK+
Sbjct: 478 DVERVCHKLLTIL--SQPIEVKQHQLRIGASIGVVLFPMADKTLDDLMRFADTAMYHAKE 535

Query: 250 SGRNRVVCFSDIEN 263
           +GRN    +    +
Sbjct: 536 NGRNGFAFYHQAMS 549


>gi|311105671|ref|YP_003978524.1| RNase II stability modulator [Achromobacter xylosoxidans A8]
 gi|310760360|gb|ADP15809.1| RNase II stability modulator [Achromobacter xylosoxidans A8]
          Length = 665

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 16/189 (8%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D L+ L N  A  + L +      + +  ++F D+D FK
Sbjct: 219 SGTDITEERQAQERLRVLANTDMLTNLPNRHAITTRLKAALAAGQDGRGGVLFLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND++GH  GD+++  ++  +         + RLGG+EF      +     E  A  + 
Sbjct: 279 RINDHYGHGFGDRLLKSVAVAISSCLSEGQTLARLGGDEFIVLHEAAQTWELEATAQRII 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             LR+      I       ++ + S GIA    H   + +++  AD A+YVAK++GR+  
Sbjct: 339 ERLREPFRQGLI------EVYTSCSIGIAMYPEHGADLDSVVRSADIAMYVAKEAGRHTY 392

Query: 256 VCFSDIENN 264
             F    + 
Sbjct: 393 RVFQPEMDR 401


>gi|269102594|ref|ZP_06155291.1| GGDEF family protein [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268162492|gb|EEZ40988.1| GGDEF family protein [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 434

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 99/222 (44%), Gaps = 32/222 (14%)

Query: 63  YILVENLSLVIISITISLLLGYISG---SILKELFISYN-----------------RISQ 102
           +I  ENL  +++ I I   L +++     + K++  +                   R  +
Sbjct: 215 WISEENLVKILLVIWILTALVFLTTERIRLYKQIQNAEQKAARLKTMNKVLFEKSLRFEE 274

Query: 103 LSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+ ID L+   N           +       +  S+++ DID+FK+IND +GH  GD+V+
Sbjct: 275 LAYIDPLTKAKNRNAVSDWVRQVVEHSKDMAQPFSVIYIDIDFFKKINDKYGHGRGDEVL 334

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
           A  +D L         + R GGEEF      +S    A  A  LR+ I   Q     G  
Sbjct: 335 AKFADLLRRNIDKSDMLVRWGGEEFVVFCPSTSLGVVAEKAELLREAIAEYQW----GNE 390

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +T S G+A+    E  + ++ RAD+ALY AK+ GRNRV  
Sbjct: 391 FSVTCSLGVAQL-ENEEFNRLMERADEALYKAKERGRNRVEI 431


>gi|332306730|ref|YP_004434581.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332174059|gb|AEE23313.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 797

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            SI  E   S + I   +  D L+ L N +         + +      +++++F D+D F
Sbjct: 334 ASIAIERQKSSDLIWHQANFDELTQLPNRNIMGEHLKKALDAAKRNKTQVAVMFLDLDNF 393

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
           K IND  GH VGD ++   + ++         V RLGG+EF       +E       A  
Sbjct: 394 KDINDTLGHGVGDALLIDCAKRISGCVRHKDTVARLGGDEFVIILNDITEFSGLEKTAQK 453

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           + K IE  Q        +H + S GI       E +++++  ADQA+Y AK  G+N    
Sbjct: 454 ILKAIE--QPYHLQSEIVHSSASIGITIYPDDAEDVASLLKNADQAMYGAKDIGKNNYHY 511

Query: 258 FSDIENNTC 266
           ++    N  
Sbjct: 512 YTKSMRNAA 520


>gi|320184493|gb|EFW59297.1| hypothetical protein SGF_03332 [Shigella flexneri CDC 796-83]
 gi|332096938|gb|EGJ01927.1| cellulose synthesis regulatory protein domain protein [Shigella
           boydii 3594-74]
          Length = 312

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/199 (27%), Positives = 95/199 (47%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 110 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 169

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND F H  GD+V++  +  +          GR+GGEEF
Sbjct: 170 LCQTHQHPFSVIQVDLDHFKAINDRFSHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 229

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 230 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEEAGDYDFEQLQS 289

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD+ LY+AK++GRNRV  
Sbjct: 290 LADRRLYLAKQAGRNRVCA 308


>gi|229520623|ref|ZP_04410047.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
 gi|229342447|gb|EEO07441.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
          Length = 353

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 65/264 (24%), Positives = 111/264 (42%), Gaps = 22/264 (8%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI 64
              ++   +        F P  F I+ S  F+   + +  I    + Y          + 
Sbjct: 85  FATYMKPLMMGVYLWSCFVPILFYIFTSARFAFVTSCLFLIIQSNIIY----------WQ 134

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFI 119
           L +  + +  S+ + L   YI   ++  ++    R     +  L+  D L+G  N  +  
Sbjct: 135 LQQTGAAISWSVLLHLCFAYIGIWVVAHVYEDNRRKIENSLLYLASRDPLTGAHNRLSLT 194

Query: 120 SSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           +S   +        L ++  D+D+FK IND FGH  GDKV+   +     V G    + R
Sbjct: 195 TSFQHFERFSDQTSLCLLVIDLDFFKSINDQFGHDTGDKVLIETTRLFTQVVGDNN-LYR 253

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
           +GGEEF       S ++A  +   LR I+            + +TIS G+ E    + ++
Sbjct: 254 IGGEEFCVTLFDQSLEQAGRVCERLRAIVSQHLFAFGE-KRVQVTISIGVCEYQAGDQLN 312

Query: 235 TIIYRADQALYVAKKSGRNRVVCF 258
            ++  AD  LY AKK+GRN+V  F
Sbjct: 313 DLLKFADMELYRAKKAGRNQVRLF 336


>gi|126462427|ref|YP_001043541.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhodobacter sphaeroides ATCC 17029]
 gi|126104091|gb|ABN76769.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 833

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 88/187 (47%), Gaps = 12/187 (6%)

Query: 85  ISGSILKELFISYNRIS--QLSRIDCLSGLLNHSAF----ISSLGSY--NEKLSIVFFDI 136
           IS     E      ++    ++R D L+GL N   F      ++ S      ++++  D+
Sbjct: 377 ISARRQAEEDRVMAQLQVFHMARHDMLTGLPNRHYFGDCYQEAVASLTPERSVAVLMLDL 436

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAIL 195
           D FK +ND  GHPVGD+V+  ++++L     +   V RLGG+EFA       SEQEA  L
Sbjct: 437 DGFKTVNDTRGHPVGDQVLCEVANRLRTSVRSTDTVARLGGDEFAVIQTPIRSEQEACDL 496

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  L   I  S+     G    +  S GIA  R   +    I+  AD ALY AK++GR  
Sbjct: 497 ARRLIAAI--SKPFDLEGAVPEVGASVGIAFARGRGDSAEEIMRYADVALYAAKQAGRGT 554

Query: 255 VVCFSDI 261
              F + 
Sbjct: 555 FRVFDEA 561


>gi|332702791|ref|ZP_08422879.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552940|gb|EGJ49984.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 427

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 11/176 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
           + +  L      +   +  D L+G +N  +F             Y   LS+  FDID FK
Sbjct: 254 TDVTRLESEKRGLIYKASTDHLTGAMNRMSFQEFLSEEMKRATRYGTPLSVAMFDIDDFK 313

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND  GH  GD+V+  L   +         + R GGEEF   A G   +E A L   LR
Sbjct: 314 RINDELGHDAGDRVLVGLVKLVEANIRELDRLARWGGEEFMLLAPGCGPEEMAKLGEKLR 373

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +IE+ Q     G    +T S G+++    +  + ++ RAD+ALY+AK+ G+N V 
Sbjct: 374 ALIESGQP----GGVGRVTCSFGVSDFAPGDTGADLLRRADEALYLAKRRGKNTVT 425


>gi|332715584|ref|YP_004443050.1| diguanylate cyclasediguanylate cyclase/phosphodiesterase
           [Agrobacterium sp. H13-3]
 gi|325062269|gb|ADY65959.1| diguanylate cyclasediguanylate cyclase/phosphodiesterase
           [Agrobacterium sp. H13-3]
          Length = 779

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 10/190 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFFDIDY 138
           ++   L E   +   I  L+R D L+GL N + F + L    E      + +++  D+D 
Sbjct: 335 LAIRDLTEKREAQREIEYLARHDVLTGLSNRTMFQTRLHQQIEHCDAEDEFALLALDLDR 394

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILAN 197
           FK +ND FGH  GD+V+  ++  L         V RLGG+EF    A  +  +EA +LA 
Sbjct: 395 FKAVNDIFGHAEGDRVLKKVATILDECARPGDIVARLGGDEFVILTARHTKSEEARLLAE 454

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  +    ++N ++ P+  + +S GIA          +I++ AD ALY AK  GR  + 
Sbjct: 455 TILAMF-GLKMNAANDPT-AVGVSIGIAVFPRDGNSNESILHAADLALYRAKMGGRGILS 512

Query: 257 CFSDIENNTC 266
            +  + +   
Sbjct: 513 FYDPLMDQEA 522


>gi|322434508|ref|YP_004216720.1| diguanylate cyclase [Acidobacterium sp. MP5ACTX9]
 gi|321162235|gb|ADW67940.1| diguanylate cyclase [Acidobacterium sp. MP5ACTX9]
          Length = 460

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 66/254 (25%), Positives = 110/254 (43%), Gaps = 27/254 (10%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTP-FYGLEYILVENLSLVIISITI--------S 79
           +   + F    A++  +A +  + +  +P     E ++  +L+L+ + +          S
Sbjct: 194 VVMRLRFPFLCASLAGMALVGSWSLNHSPALLHAERVMGSSLTLLALGLIFLAGMSLENS 253

Query: 80  LLLGYISGSIL----KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
              GY+S  I     K L  +   + ++S ID L+ L N       L          N+ 
Sbjct: 254 ERRGYLSHMIADLQSKALTRANQELQRVSSIDKLTSLPNRRTLEERLASMWVACHQLNDF 313

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGS 187
           LS+V  D+D+FK IND FGH  GD+ +  +   L+        +  R GGEEF      +
Sbjct: 314 LSVVLIDVDHFKSINDTFGHLSGDQTLRAIGAVLLHGLRNQDDLAGRFGGEEFLVLLPHT 373

Query: 188 SEQEAAILANDLRKIIENSQIN----ISSGPSIHITISAGIAE--RCHKEPISTIIYRAD 241
              EA  +A+ +R ++  +               +TIS G++         I  ++  AD
Sbjct: 374 GPTEAIEVADRIRTLVAGAPPRSRRTDDKQDPWPVTISCGVSSCNPRSGFEIDDLLRLAD 433

Query: 242 QALYVAKKSGRNRV 255
            ALY AK+SGRNRV
Sbjct: 434 AALYNAKRSGRNRV 447


>gi|271502688|ref|YP_003335714.1| PAS/PAC and GAF sensor-containing diguanylate cyclase [Dickeya
           dadantii Ech586]
 gi|270346243|gb|ACZ79008.1| diguanylate cyclase with PAS/PAC and GAF sensors [Dickeya dadantii
           Ech586]
          Length = 771

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 107/230 (46%), Gaps = 14/230 (6%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           F+   I+  N  +  IGL   +   Y   +   L     T+  L   +     +E   + 
Sbjct: 545 FMGLPIYFRNEVVGMIGLGNRFD-GYNEQQLRFLSPFVDTLGSLFYALETQRAREELEA- 602

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS----YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            ++ +++  D L+G+ N  A+I         + +  ++   DID+FK++ND +GH VGD 
Sbjct: 603 -KLLEMANTDPLTGIHNRRAYILEAEKCYRNHEKNTALAIIDIDFFKKVNDQYGHHVGDV 661

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            I  L++ +     T  FV RLGGEEF      ++      + N +R  +EN+   +  G
Sbjct: 662 AICRLAEIITSKLRTDDFVARLGGEEFGLIMHHANPDNVDTIINGIRTEVENTLFTV-DG 720

Query: 214 PSIHITISAGIAERCH------KEPISTIIYRADQALYVAKKSGRNRVVC 257
            S H TIS G     H      K+   + + RAD ALY AK +GRNRVV 
Sbjct: 721 YSFHFTISIGATFIKHRHVQNLKDNFESDMKRADDALYEAKNAGRNRVVW 770


>gi|229525306|ref|ZP_04414711.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae bv.
           albensis VL426]
 gi|229338887|gb|EEO03904.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae bv.
           albensis VL426]
          Length = 684

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+GL N   F   L    +    L +++ DID FK IND+ GH +GDKVI  ++ 
Sbjct: 256 AHIDSLTGLYNRHGFTKRLEQCIQNETPLVMLYLDIDNFKNINDSLGHHIGDKVIKEVAA 315

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHIT 219
           +L  +      +G LGG+EF            A +LA+ +  +I  +Q       S  + 
Sbjct: 316 RLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLI--NQPFDLHHFSKRLA 373

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +           ++  AD A+Y AK+ GRNR++ F+D  N   
Sbjct: 374 CSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEA 421


>gi|218441767|ref|YP_002380096.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7424]
 gi|218174495|gb|ACK73228.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7424]
          Length = 684

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 13/191 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIV 132
           L+  YI    + +  ++ N +   +  D L+ L N S F   L +   K       ++++
Sbjct: 234 LIRSYIF--DITDRKMAENSLHYQAYYDTLTDLPNRSLFYEKLSTALAKAYLEETLIAVM 291

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQE 191
           F D+D FK IND  GH +GD+++   + +L     +   + R GG+EF        +E+E
Sbjct: 292 FIDLDGFKNINDTLGHTLGDELLGSFAQRLRHNLRSSDILARWGGDEFTILIPQIKNEEE 351

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
             I A  +  I++  Q        +++  S G+A      +   TII  AD ALY  K+ 
Sbjct: 352 IEICAKRVFSILQ--QPFQVGNHLLYLKASIGVAIYPRDGQDAETIIKNADAALYRTKEM 409

Query: 251 GRNRVVCFSDI 261
           GRN    +  +
Sbjct: 410 GRNHYQIYHPL 420


>gi|209516198|ref|ZP_03265056.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160]
 gi|209503309|gb|EEA03307.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160]
          Length = 696

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 100/216 (46%), Gaps = 14/216 (6%)

Query: 63  YILVENLSLVIISITISLLLGYI---SGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           ++    + L +  +T++L+L      +  +L  +     ++ +L+ +D L+GL N +   
Sbjct: 215 WLATSVILLTLAVLTVTLMLSRFDVRTTFLLGAMSKLNGQVVRLATLDALTGLPNRATLT 274

Query: 120 SSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             +          +   +++F D+D FK IND+ GH  GD V++  + +L+    +   V
Sbjct: 275 ERIERAISVARRQHSSFAVLFMDLDGFKTINDSLGHSTGDAVLSAFARRLLQCVRSTDTV 334

Query: 173 GRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
            RLGG+EF   A   +S  +AA LA+ +   +       S    + +  S GIA      
Sbjct: 335 ARLGGDEFVVLAEHLASGNDAAELADGVLDRMRQG--TWSDEQPLQVMPSIGIALFPRDG 392

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           + + T++  AD A+Y AK++GR     F    N   
Sbjct: 393 DTVDTLLKHADAAMYEAKRAGRGTYRFFERSMNEAA 428


>gi|149375546|ref|ZP_01893316.1| diguanylate cyclase [Marinobacter algicola DG893]
 gi|149360251|gb|EDM48705.1| diguanylate cyclase [Marinobacter algicola DG893]
          Length = 359

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 116/246 (47%), Gaps = 16/246 (6%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL-----EYILVENLSLVIIS 75
           S + H +++   I   + +   + +A + +FY+ +     L     E  L++ L +  I+
Sbjct: 95  SATVHAWVLLIPIISHLLMGRRLGLA-VSVFYMSIAGIIFLLRHHNEPTLMQALPIANIA 153

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128
           + ISL +   S         S  ++ ++++ D L+GL N +               YN  
Sbjct: 154 V-ISLCILVFSHVYEVTREQSQRQLLKIAQTDTLTGLANRARLSDIFEREQQRARRYNTP 212

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           ++++  D+D+FK++ND +GH  GD  +  ++              RLGGEEF      ++
Sbjct: 213 MTLLALDLDHFKEVNDRYGHDTGDLTLQHVARIFRECLRATDLPARLGGEEFGILLTNTN 272

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVA 247
            Q+   +A  +R  + ++ + +++   I +T+S G+AE     + +  ++  AD+ LY A
Sbjct: 273 GQQGLEVAEKIRIAVASTPLTVNNDV-IRLTLSGGVAEFGPDGDTLRQLVREADKRLYEA 331

Query: 248 KKSGRN 253
           K  GRN
Sbjct: 332 KDRGRN 337


>gi|119477208|ref|ZP_01617444.1| sensory box/GGDEF family protein [marine gamma proteobacterium
           HTCC2143]
 gi|119449571|gb|EAW30809.1| sensory box/GGDEF family protein [marine gamma proteobacterium
           HTCC2143]
          Length = 700

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 83/189 (43%), Gaps = 11/189 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           +    +        ++ + +  D L+GL N    +  L          N +L+++  D+D
Sbjct: 244 VVKEDITVQRDYEQQLLRQAHYDDLTGLANRVLLVEKLTQALQNAQQNNSQLAVLGIDLD 303

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILA 196
            FK +ND+ GH +GD ++   + +L     +   V R+GG+EF       S  + A ++A
Sbjct: 304 DFKNVNDSVGHSIGDTLLKQAAQRLSSCIRSGDIVARMGGDEFVLVLPLLSDAKNAELMA 363

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             + +       NI +G    +T S GI+           ++  AD A+Y +K  GR++ 
Sbjct: 364 QRIVQKFSK-PFNI-AGRQYSVTCSIGISVYPDDTSDAHMMLRNADLAMYQSKDQGRDQY 421

Query: 256 VCFSDIENN 264
             F++  N 
Sbjct: 422 QFFTEDINR 430


>gi|107100304|ref|ZP_01364222.1| hypothetical protein PaerPA_01001329 [Pseudomonas aeruginosa PACS2]
          Length = 651

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 10/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
             + +      ++ +++  D L+GL N  AF   LG           +L++++ D+D FK
Sbjct: 471 RDVSDQIAYQQQLLEMAYRDPLTGLGNRKAFDEQLGQALLRAGSGGSELALLYLDLDRFK 530

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND FGH +GD ++  +++++      P    RLGG+EFA     S E     LA  L 
Sbjct: 531 EVNDRFGHDIGDALLRTVAERVRSTLRQPDKAYRLGGDEFAVLLEDSQENNPQRLAERLL 590

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +    I ++      +T S GIA    H      ++  AD A+Y AK+  RN    +
Sbjct: 591 AAL-VQPIALNGERIDFVTPSIGIALYPRHAGDAEGLVRAADSAMYEAKRQ-RNHYCLY 647


>gi|15596304|ref|NP_249798.1| hypothetical protein PA1107 [Pseudomonas aeruginosa PAO1]
 gi|107100558|ref|ZP_01364476.1| hypothetical protein PaerPA_01001583 [Pseudomonas aeruginosa PACS2]
 gi|218892929|ref|YP_002441798.1| hypothetical protein PLES_42141 [Pseudomonas aeruginosa LESB58]
 gi|254234241|ref|ZP_04927564.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254239476|ref|ZP_04932798.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|9947025|gb|AAG04496.1|AE004541_1 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|126166172|gb|EAZ51683.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126192854|gb|EAZ56917.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218773157|emb|CAW28969.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
          Length = 398

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 88/176 (50%), Gaps = 10/176 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           +EL     ++  L+  D L+GL N   F          +    + LS++  D+D+FK IN
Sbjct: 213 QELEEKNRQLEYLAGHDPLTGLFNRREFDQLVLMELARIARQPQPLSLLMVDLDHFKYIN 272

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHP GD+VI   ++ L     +   V RLGGEEF      ++EQ+A  LA  LR+ +
Sbjct: 273 DRYGHPFGDEVIRHAANLLRGNTRSSDSVARLGGEEFLLLLPDTAEQQARSLAEKLRERL 332

Query: 204 ENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
           E + +    G  + +T S G+A            +   ADQALY AK SGRNRV  
Sbjct: 333 EGTPLATQDGV-LCLTASFGVASLDGGGQASYEQLYSAADQALYRAKSSGRNRVEV 387


>gi|327483453|gb|AEA77860.1| C-di-GMP phosphodiesterase A-like protein [Vibrio cholerae
           LMA3894-4]
          Length = 684

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+GL N   F   L    +    L +++ DID FK IND+ GH +GDKVI  ++ 
Sbjct: 256 AHIDSLTGLYNRHGFTKRLEQCIQNETPLVMLYLDIDNFKNINDSLGHHIGDKVIKEVAA 315

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHIT 219
           +L  +      +G LGG+EF            A +LA+ +  +I  +Q       S  + 
Sbjct: 316 RLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLI--NQPFDLHHFSKRLA 373

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +           ++  AD A+Y AK+ GRNR++ F+D  N   
Sbjct: 374 CSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEA 421


>gi|326318212|ref|YP_004235884.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375048|gb|ADX47317.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 872

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 10/189 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYF 139
           + + L + + +  R+  LS  D L+GL N       L +        E L+++  D+D F
Sbjct: 418 TATDLTDEWQAQARVRHLSLHDTLTGLPNRRRLHQFLATLLESDGPAEPLALLCLDLDRF 477

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND  GH +GD+V+  ++ +L  + G      RLGG+EF     G   Q+   +    
Sbjct: 478 KPINDALGHALGDRVLQEVARRLQALLGPQDIAARLGGDEFVLVLAG--AQDPGDIGRRC 535

Query: 200 RKIIENS-QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             ++    +     G ++ I  S G+ +   H      ++ + D ALY AK +GRN   C
Sbjct: 536 AAVVAALCEPFAFDGQTVCIGTSIGVVQAPLHARTAQELLRKGDIALYDAKAAGRNTWRC 595

Query: 258 FSDIENNTC 266
           ++D  +   
Sbjct: 596 YTDALDAQA 604


>gi|217418926|ref|ZP_03450433.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 576]
 gi|217398230|gb|EEC38245.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 576]
          Length = 688

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 66/215 (30%), Positives = 101/215 (46%), Gaps = 15/215 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRIS----QLSRIDCLSGLLNHSAFIS 120
           L   ++L  ++I I  L+          L  S +R+S    +++  D L+ L N      
Sbjct: 214 LAATVALFTVAILIVALILSHFDVRTTLLAGSVSRLSGQIVRMAAFDTLTDLPNRRTLNE 273

Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            LG           KL+I+F D+D FK IND+ GHP GD+V+   S +L+        V 
Sbjct: 274 HLGRALAAARARGGKLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVA 333

Query: 174 RLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           RLGG+EF       SS+ EAA +A D+ + +   + N   G ++ +T S GIA      +
Sbjct: 334 RLGGDEFVVLLESVSSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGD 391

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              T++  AD A+Y AK+SGR     F    +   
Sbjct: 392 TADTLLRHADAAMYAAKRSGRCTYRFFEATMDEAA 426


>gi|158337195|ref|YP_001518370.1| diguanylate cyclase/phosphodiesterase [Acaryochloris marina
           MBIC11017]
 gi|158307436|gb|ABW29053.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF domains
           [Acaryochloris marina MBIC11017]
          Length = 862

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 12/189 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDID 137
           S + + E  ++  ++   +  D L+ L N   F+  L            ++ + +F D+D
Sbjct: 415 SQTDITEYHLAREQLVHDALHDALTCLPNRVLFMDRLTQAIKQYQRHPEDQFATLFLDLD 474

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILA 196
            FK IND+ GH +GD+++  + ++L         V R+GG+EF        + +     A
Sbjct: 475 RFKIINDSLGHMIGDRLLIEVGNRLQFCLRDQDTVARIGGDEFVILLNTIQNMEHVLQTA 534

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +++ ++  Q     G  I    S GIA      +    ++  AD A+Y AK  G+NR 
Sbjct: 535 ERIQQQLK--QAFSIEGHEIFTGTSIGIALSSPEYQHAEELLRDADTAMYRAKNLGKNRY 592

Query: 256 VCFSDIENN 264
             FS    +
Sbjct: 593 EIFSSSMRS 601


>gi|22298593|ref|NP_681840.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294773|dbj|BAC08602.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 558

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 9/180 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDID 137
           +   I+  L  +   + +L+ +D L+GL N          F++      + L I   D+D
Sbjct: 362 LITRIINRLERT-RLLKRLAEVDPLTGLSNRRKATEDIERFLTLASRQQQTLCIAVLDLD 420

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           YFK+IND +GH VGD+V+   +  L         V R GGEEF  A  G S + A     
Sbjct: 421 YFKRINDTYGHDVGDQVLVTTARMLRQSLRMEDVVARWGGEEFLIALYGISLEVAKHRLA 480

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
              + + N   +  +  S  +T SAGI++   H + +  ++  AD ALY AK +GR++++
Sbjct: 481 ICLQRLRNHTFHAPNHHSFKVTFSAGISQFPTHGQSLVQLVKMADDALYAAKAAGRSQIM 540


>gi|85715174|ref|ZP_01046158.1| hypothetical protein NB311A_01280 [Nitrobacter sp. Nb-311A]
 gi|85698089|gb|EAQ35962.1| hypothetical protein NB311A_01280 [Nitrobacter sp. Nb-311A]
          Length = 264

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/193 (27%), Positives = 99/193 (51%), Gaps = 10/193 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-- 129
           VII + I+        S L++L I++ ++  ++  D L+   N +AF + + +Y +++  
Sbjct: 58  VIIPLLIAPPFFLYLLSKLRQLAIAHEQLMVIASTDGLTSCFNRAAFTTLVDAYLDRVDR 117

Query: 130 -------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                  +++  D+D+FK +NDNFGH +GD+ +  ++  +         VGR+GGEEF+ 
Sbjct: 118 QEKGGEGALLVMDVDHFKNVNDNFGHDMGDEALKLIAQSIKSTLREVDLVGRMGGEEFSV 177

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
              G +     ++A  +R+ ++        G   +++IS G A        S +   AD+
Sbjct: 178 FLPGIAPDRVVMVAERIRETVKAVNF-CPQGIPCNLSISIGGATYVRTASFSELYKLADK 236

Query: 243 ALYVAKKSGRNRV 255
            LY AK+ GR+RV
Sbjct: 237 LLYDAKRQGRDRV 249


>gi|114321215|ref|YP_742898.1| diguanylate cyclase/phosphodiesterase [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227609|gb|ABI57408.1| diguanylate cyclase/phosphodiesterase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 584

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 12/183 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYN----EKLSIVFFDIDY 138
             + +E+      + +L+  D L+GL N         + L         +++++  D+D+
Sbjct: 133 ARLAREVREQRTALERLAHYDALTGLPNRWFFERFLDNQLQRAGDNDGHQIAVLVLDLDH 192

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILAN 197
           FK +ND FGH  GD+V+   + +++        V R+GG+EF            A+ +A 
Sbjct: 193 FKAVNDRFGHSEGDQVLKEATRRILACVRDVDMVSRIGGDEFVVVLGRLRGRGGASRVAR 252

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            L + +  S+       S  +T S G+A      E +  +I RAD A++ AK  GRN   
Sbjct: 253 ALIRSL--SRPFTVGARSHRLTASVGVAFYPKDGETVEDLIRRADLAMFQAKDRGRNGWA 310

Query: 257 CFS 259
            F 
Sbjct: 311 AFD 313


>gi|330806679|ref|YP_004351141.1| diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327374787|gb|AEA66137.1| Putative diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 374

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 12/181 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           I+  + +E+  + +  ++ ++ D L+GL +  AF               + L  V  D+D
Sbjct: 197 IAFRLTREMEQANSISTRAAQTDELTGLKSRRAFFEHAQQLYNECKAKRQGLCAVMLDMD 256

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK IND +GH VGD+V+  +   +   F      GRLGGEEFA     +S + A  +A 
Sbjct: 257 HFKHINDTYGHQVGDQVLRQMGTVISSSFRATDIHGRLGGEEFAILLPDTSIEVATQIAE 316

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
            L   I    I     P  HI+ S G+A      + + +++  AD+ALY AK  GRNRV 
Sbjct: 317 RLIDTIAGLTIE----PVHHISASLGVASTEACNKDLHSLMNDADKALYRAKALGRNRVA 372

Query: 257 C 257
            
Sbjct: 373 V 373


>gi|302878235|ref|YP_003846799.1| response regulator receiver modulated diguanylate cyclase
           [Gallionella capsiferriformans ES-2]
 gi|302581024|gb|ADL55035.1| response regulator receiver modulated diguanylate cyclase
           [Gallionella capsiferriformans ES-2]
          Length = 636

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
             +  EL  + +R+ QL+  D L+GL N  A +  L              + +  D+D+F
Sbjct: 457 QRLANELTAANHRLQQLALTDVLTGLPNRRAAMDRLEQEWSSMRRSQRSFACMVLDVDHF 516

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND +GHP GD  ++ ++  L        FV R GGEEF      +    A   A  L
Sbjct: 517 KAINDKYGHPAGDAALSGIAQALRAAARAQDFVCRFGGEEFLVICPDTDVDAAFQCAERL 576

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           R  +   ++       + +TIS GIA    +   +  ++  AD+ LY AK++GRNR VC
Sbjct: 577 RLQVATMKV-AGVAAELRLTISIGIAVSKPEMDKVEALLVGADKCLYAAKQAGRNRTVC 634


>gi|209521190|ref|ZP_03269914.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. H160]
 gi|209498362|gb|EDZ98493.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. H160]
          Length = 667

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 95/187 (50%), Gaps = 11/187 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYF 139
           SG+ + E  ++ +R+ + +  D L+GL N +A    +       +  E + ++F D+D F
Sbjct: 220 SGTDITEQRLAQDRLIEQATTDPLTGLANRNAIQERIQIAIEQAAPGETVGVLFLDLDNF 279

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND++GH  GD++I  +SD +         + RLGG+EF   A   S   A  L N  
Sbjct: 280 KTVNDHYGHVFGDRLICDVSDAIRNCLNPGDSLARLGGDEFIVLATKGS---ADALENTA 336

Query: 200 RKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++I++  ++  + G   ++   S GIA    H + + ++I  AD A+YVAK  G+     
Sbjct: 337 QRILDRMRMPFAVGLVEVYTGCSIGIARWPEHGDSLESLIRSADTAMYVAKDEGKRTHRV 396

Query: 258 FSDIENN 264
           FS   N 
Sbjct: 397 FSPDMNR 403


>gi|144898553|emb|CAM75417.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 823

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 9/180 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            +  L      +  ++  D L+GL N       L           + +++ + D+D FK 
Sbjct: 370 DISALKRHEEALRHMAHHDALTGLPNRLLLADRLDVALAKARRTGKMVAVAYVDLDGFKP 429

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           +ND  GH VGD V+     +L+        V RLGG+E+         +Q+     + + 
Sbjct: 430 VNDRLGHHVGDSVLIQAGRRLLDSVAADDTVARLGGDEYVLVMQDMDDDQQCRQRLSQVL 489

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
             +      +    +I IT S G A   + +    T++  AD+A+Y AK+ GRNR+  F 
Sbjct: 490 TAMAEPMRFLDEDSAISITASIGAALYPNDDSDPDTLLRHADRAMYQAKQEGRNRLAMFD 549


>gi|67921586|ref|ZP_00515104.1| GGDEF [Crocosphaera watsonii WH 8501]
 gi|67856698|gb|EAM51939.1| GGDEF [Crocosphaera watsonii WH 8501]
          Length = 192

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 79/177 (44%), Gaps = 11/177 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQIN 143
           KEL  +  ++  L+ +D L+ L N   F   L     +L       S++  DIDYFK  N
Sbjct: 6   KELENAKEKLEYLATVDELTQLYNRRYFNEYLDQEWRRLGRERKFISLIVCDIDYFKLYN 65

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D + H  GDK +  ++  L   +      V R GGEEF      ++   A  +A  L   
Sbjct: 66  DYYHHQAGDKCLYQVAQCLKNLIKRPADLVARFGGEEFIIILSNTNSLGAEKVALKLCNA 125

Query: 203 IENSQINIS-SGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVV 256
           +    I    S  S H+T+S G+A      K     +I  AD+ALY AK  GRNR  
Sbjct: 126 VAALDIPHHRSKCSSHVTLSLGVATTMPRVKVSPQKLIQAADKALYKAKDRGRNRFA 182


>gi|318603956|emb|CBY25454.1| hmst protein [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 523

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/162 (31%), Positives = 80/162 (49%), Gaps = 7/162 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++   ++ D ++GL N     ++L       +  S++  DID+FK+IND++GH VGD+VI
Sbjct: 365 KLRFEAQTDPMTGLYNRRGLATTLEPIVQLGQHFSVIALDIDHFKEINDSYGHDVGDEVI 424

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L+ Q+         + R GGEEF      +    +  +A  LR  +E   +       
Sbjct: 425 KQLAIQIRESSRDSDILCRSGGEEFLMLLPSTVPDVSTQVAKRLRHNVEMMVMANIR--- 481

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             ITIS G+A    +      + RAD+ALY AK+  RNRV  
Sbjct: 482 -PITISLGVAFWNGEGTPEDALKRADEALYRAKQQWRNRVEV 522


>gi|229164361|ref|ZP_04292291.1| GGDEF domain protein [Bacillus cereus R309803]
 gi|228619104|gb|EEK76000.1| GGDEF domain protein [Bacillus cereus R309803]
          Length = 351

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 111/238 (46%), Gaps = 12/238 (5%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI-- 85
           +I   I F   +   I    I+     L+       IL +++S+V + +  S +  YI  
Sbjct: 112 LIGVGIIFIWRMKASILTRWIWFNVYSLSILAVPLSILFKDMSIVALYLVCSGVAAYITF 171

Query: 86  -SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
            S + + +    +  + Q + ID L+GL N   F   +  +       N+ L ++  DID
Sbjct: 172 ISANYVLQSNELFQTMKQYATIDALTGLGNVRQFDLEMNRHIGNKRMKNDSLCLLLIDID 231

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK +ND +GHP GD+V+  +   L  +   P    R GGEEFA             +  
Sbjct: 232 HFKCVNDTYGHPAGDEVLKQIGSILREISTFPNLAFRKGGEEFALLIPKKGLTYGVSMGE 291

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +R ++EN    + +G  I IT+S GI+    +E     I  AD ALY +K++GRN+V
Sbjct: 292 QVRTVVENHPFQLLNGTKIKITVSVGISVY--EESAEQFIQAADDALYYSKRNGRNQV 347


>gi|94263568|ref|ZP_01287379.1| GGDEF:EAL [delta proteobacterium MLMS-1]
 gi|93456101|gb|EAT06248.1| GGDEF:EAL [delta proteobacterium MLMS-1]
          Length = 775

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 116/278 (41%), Gaps = 16/278 (5%)

Query: 2   TRSLKDFLSIWL-----CHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLT 56
           T  L   L  WL       +   + F PH     +        A    +A++ + Y    
Sbjct: 236 TPRLPAGLRQWLRSGHDAFDGPAKLFLPHRNERLWGGIIHQPDAAGRDVADLVILYDATA 295

Query: 57  PFYGLEYILVENLSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNH 115
                    + NL++  I +   L+L Y ++    +E+  +  ++   +  D L+GL N 
Sbjct: 296 LLGTFRQTAITNLAMATILLGALLVLLYSVTRKAEREVEQAMEQLRHQTTHDLLTGLPNR 355

Query: 116 SAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
             F   L             ++++  D+D F+ +N+NFGH  GD+V+  ++ +L      
Sbjct: 356 ELFQDRLRQATRRAAKEERPVAVLQLDLDNFRAVNNNFGHAAGDEVLRVIARRLQQALAD 415

Query: 169 PMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
              VGRL G+EF        E +E+A +A  +   +E + ++    P+I +  S GIA  
Sbjct: 416 DCTVGRLSGDEFVILLPNIKECRESAEMARQILAALE-TPVSTPHTPNITVGGSVGIACF 474

Query: 228 CHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
                   T++   + A+Y AKK+GR     ++   N 
Sbjct: 475 PDDGKDDKTLLRHVEMAMYQAKKAGRGTYAFYARELNQ 512


>gi|325109953|ref|YP_004271021.1| diguanylate cyclase [Planctomyces brasiliensis DSM 5305]
 gi|324970221|gb|ADY60999.1| diguanylate cyclase [Planctomyces brasiliensis DSM 5305]
          Length = 650

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 15/187 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQIN 143
           + L      + +    D L+G+ N + F  +L           + + ++F DID FK +N
Sbjct: 329 QRLQSQNEELQEKVTRDPLTGVFNRAYFDKALNDAINHSRDRYQPVGVIFTDIDKFKSLN 388

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD+V+   +  +     +   + R GGEEF       +E+    LA  +R  +
Sbjct: 389 DTYGHHFGDQVLKTFAKVVAGNMRSADVLARYGGEEFVILVSRPTEKGIEKLAERIRATV 448

Query: 204 ENSQINISSGPSIHITISAGIAERCHK----EPISTIIYRADQALYVAKKSGRNRV---V 256
           E  QI    G  + IT S G A         +    ++  AD+A+Y +K++GRNR     
Sbjct: 449 EK-QIIEEQGTRVSITASFGAALMIPGRLERDCAQHLLQTADEAMYESKRTGRNRTTHRC 507

Query: 257 CFSDIEN 263
            FS+ + 
Sbjct: 508 LFSEQDR 514


>gi|262276540|ref|ZP_06054349.1| hypothetical GGDEF domain family protein [Grimontia hollisae CIP
           101886]
 gi|262220348|gb|EEY71664.1| hypothetical GGDEF domain family protein [Grimontia hollisae CIP
           101886]
          Length = 518

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 25/206 (12%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSR-----------------IDCLSGLLNHSAF 118
           +T +  L      +L++L  +  ++  L +                 +D L+ + N +A 
Sbjct: 313 VTRNRALEEREQQLLEKLQYNEQKLEALYQQTMDYRKRLGDQERKLLLDPLTKVYNRAAL 372

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L         Y   L +   DID+FK +ND +GH VGDKV+  ++  +        F
Sbjct: 373 DDRLEHEYRCWMRYQTPLCLAMIDIDHFKGVNDQYGHLVGDKVLKVVARTIHQCLRDTDF 432

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
           + R GGEEF      +  +   +L N++R+ I            + IT+S G +     +
Sbjct: 433 IARFGGEEFVVLLPNTDGETRNVLLNNVRETIAKLPFKFKDN-RLTITVSIGASMFKDND 491

Query: 232 PISTIIYRADQALYVAKKSGRNRVVC 257
               ++ RAD ALY AK +GRN+++ 
Sbjct: 492 NTVDVLERADNALYNAKDNGRNKLIL 517


>gi|89093685|ref|ZP_01166632.1| hypothetical protein MED92_11284 [Oceanospirillum sp. MED92]
 gi|89082081|gb|EAR61306.1| hypothetical protein MED92_11284 [Oceanospirillum sp. MED92]
          Length = 444

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 78/172 (45%), Gaps = 9/172 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQIND 144
            L  +  +  +L+  D ++GL N  +           L    + L  V  DIDYFK+IND
Sbjct: 270 RLEEARQKAERLAHTDVMTGLDNRRSLYQKCDEILKFLNRSTDHLCAVVIDIDYFKKIND 329

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH +GD  I  + D L           R GGEEFA     +   +A   A  +R  IE
Sbjct: 330 TWGHNIGDHAIKLVGDLLKQSIRRTDIAARYGGEEFALILPNTDLHQAYKFAEKVRLRIE 389

Query: 205 NSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255
              I   +  SI +T S G+A        +  ++  AD ALY AK++GRN V
Sbjct: 390 EMVIETEN-ESIDLTASFGVATYNASMNEVGDLLNAADIALYSAKRAGRNCV 440


>gi|227327722|ref|ZP_03831746.1| hypothetical protein PcarcW_10466 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 552

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 69/257 (26%), Positives = 109/257 (42%), Gaps = 18/257 (7%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL 80
           +  P   ++   +  ++ +A +       L  +   P + L     +  +  +     ++
Sbjct: 300 TLKPLDSLMLNVLRHTLPLALLTIFCVWLLARLIAQPLWLLARSANKMDATDVSDDIRNI 359

Query: 81  LLGYISGSILKE--------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKL 129
              Y   S LK+        L     ++   +  D ++ LLN     S L  +    +  
Sbjct: 360 HSWYFEASQLKQAMLLGIDLLQRKIGKLRSEAHSDPMTELLNRRGLDSVLRYWQMGQKSF 419

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID FK+IND  GH VGD VI +LS  +         + R GGEEF      +S 
Sbjct: 420 AVIALDIDRFKRINDTHGHDVGDNVIRYLSQLIRTSSRDADILCRSGGEEFLILLPETSL 479

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH---KEPISTIIYRADQALYV 246
             A  +A  LR+ ++ S I +      +ITIS G+A         PI      AD+ALY 
Sbjct: 480 DVALSIAERLRQRVQESTIPVVG----NITISLGVALWEPGVSDMPIDRTFKLADEALYQ 535

Query: 247 AKKSGRNRVVCFSDIEN 263
           AK+ GRNRVV  S  E 
Sbjct: 536 AKQEGRNRVVSASGSEQ 552


>gi|188992319|ref|YP_001904329.1| hypothetical protein xccb100_2924 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167734079|emb|CAP52285.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris]
          Length = 507

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/182 (31%), Positives = 84/182 (46%), Gaps = 14/182 (7%)

Query: 95  ISYNRISQLSR---IDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144
            S NR+  L+     D L+G+ N     ++L    E        LSI F D+D FK++ND
Sbjct: 316 ESENRMRHLAEQASRDALTGVFNRHQLGTALAHEFELATRQAWPLSIAFIDLDDFKRVND 375

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD+V+   +  L  +  T   V R GGEEF      ++ + A ++   +     
Sbjct: 376 AHGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEFLVILPNTTAEAALMVIERILAETA 435

Query: 205 NSQINISSGPSIHITISAGIAERCHK----EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            + +    G  +HIT SAG+A         E I  ++  AD  LY +K  GRNRV  +  
Sbjct: 436 RTPMAQLPGGPLHITFSAGLATHGGGDRQFESIEHLLQAADTTLYRSKHRGRNRVTAYDA 495

Query: 261 IE 262
            E
Sbjct: 496 TE 497


>gi|126651943|ref|ZP_01724135.1| hypothetical protein BB14905_03420 [Bacillus sp. B14905]
 gi|126591212|gb|EAZ85321.1| hypothetical protein BB14905_03420 [Bacillus sp. B14905]
          Length = 435

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 105/237 (44%), Gaps = 21/237 (8%)

Query: 46  ANIFLFYIGLT-PFYGLEYILVENLSLVIISITISLLLGYISG-----------SILKEL 93
           A ++L   G + PF G   +  +   L + + T  + +  +             + + E+
Sbjct: 193 AKVWLEVTGQSIPFTGESVVKAQEFELDLTNRTYQVRISALQHVNHGNGLLLIFTDMTEV 252

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNF 146
                 + + +  D L+ + N  AF              +   ++V  DID+FK +ND +
Sbjct: 253 KNLQRMLEKQAYYDELTQIYNRRAFFQQCNQAYVEAKGTSSSFTVVLMDIDHFKHVNDTY 312

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+V+  +               R GGEEF  A  G +  E   LAN L + IE  
Sbjct: 313 GHAVGDQVLVHVVKACQDELKRGELFARYGGEEFVLALRGCTLVEGEALANKLCQSIELQ 372

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            +  + G      IS G+AE  +  E +  ++ +AD+ALY AK++GRNRV  + D E
Sbjct: 373 PLKTTEGIITTT-ISCGVAEGTNGEETLYQLLNKADKALYSAKQAGRNRVHVYRDNE 428


>gi|325109040|ref|YP_004270108.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Planctomyces brasiliensis DSM 5305]
 gi|324969308|gb|ADY60086.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Planctomyces brasiliensis DSM 5305]
          Length = 702

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 88/171 (51%), Gaps = 11/171 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---------LSIVFFDIDYFKQINDNF 146
            +  ++  +  D L+G+ N     + L +  ++          S+++ DID+FK INDN+
Sbjct: 396 QFKELALQASRDALTGIANRGELENQLANIMDRYLADPQGSIFSVIYLDIDHFKSINDNY 455

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+V+  L+  L     +     R GGEEF          +AA  A   R  +E +
Sbjct: 456 GHAVGDEVLVELAKLLRQEAYSNELAARYGGEEFVVLCPELELMQAAGRAERFR--LEIA 513

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++     P + IT S G+A+   +E + +++ RAD+ALY +KK+GRNR   
Sbjct: 514 KLRFKGAPDLRITSSFGVAQIESQEKLDSVLKRADKALYESKKNGRNRTTV 564


>gi|299531333|ref|ZP_07044743.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298720740|gb|EFI61687.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 473

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 114/244 (46%), Gaps = 18/244 (7%)

Query: 28  MIYFSIFFSIFIATVIF----IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           +I+ ++ + IF  T+I     +++I    +G   F    ++   +  + +  + +  L  
Sbjct: 231 LIWCALSYRIFSLTLITATLCLSSIIFISLGTLEFTPAHFLETLSFRMGLCMLVLGPLAV 290

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDI 136
             S     EL     ++S     D L+ +L   AF+              +  +I+  D+
Sbjct: 291 AGSHMARNELM---QKLSHAVNHDFLTDMLARGAFMKQGQRILERCRQDGQPFAILMLDL 347

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FKQIND+FGH  GD+++   S  L  V      VGR+GGEEFA A        A  +A
Sbjct: 348 DHFKQINDSFGHAGGDQLLRSFSQTLSQVLRAQDIVGRMGGEEFAVALPKVDATAAQEIA 407

Query: 197 NDLRKIIENSQINISSGPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRN 253
             + + I   ++ ++   ++  T+S G+   +     + +  ++  ADQALY AK SGR+
Sbjct: 408 KRINRAIRELRVPMND-KTMSATVSIGLVHTSRLQAHQSLDLLLQDADQALYDAKASGRD 466

Query: 254 RVVC 257
           RVV 
Sbjct: 467 RVVA 470


>gi|255523664|ref|ZP_05390631.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium carboxidivorans P7]
 gi|255512719|gb|EET88992.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium carboxidivorans P7]
          Length = 973

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 9/207 (4%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           L+++L+    +   +  + L+ G +    +  +      I  ++  D L+ L N    + 
Sbjct: 508 LKWVLIRGKGIFDNNNDVKLINGIVL--DITSIKEQEEYIRYIAYHDSLTNLPNRRKLME 565

Query: 121 SLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
            L    S N+  +++  D+D FK IND  GH  GDKV+  +S++L  +    MF+ R GG
Sbjct: 566 ILEDDISKNKYGALMLLDLDNFKGINDTLGHLYGDKVLKKVSEKLQYIKDEKMFISRFGG 625

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERCHKEP-IST 235
           +EF        E++ AI+ N   +II   +   +  G  I+++ S G+         +S 
Sbjct: 626 DEFLILI--QDEKDIAIIENYANQIINVFKNKLVIEGQEIYLSCSMGVTLYPFDSNKVSQ 683

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDIE 262
           ++  AD A+Y  K  G+N  + F++  
Sbjct: 684 LLMNADMAMYKVKNKGKNNYMFFNEEM 710


>gi|228955548|ref|ZP_04117551.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228804110|gb|EEM50726.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 536

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
           Y+    + E      +I+ L+  D L+ L N  AF   L           +  +++F D+
Sbjct: 86  YLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKPFAVMFLDL 145

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAIL 195
           D FK IND  GH VGD ++  ++ +L  +  + M + RL G+EF        ++ +   +
Sbjct: 146 DRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQKI 205

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
           A+ +   + N    I +   + I+ S GIA      E   +I+  AD A+Y AK  G+N 
Sbjct: 206 ADRIVAAM-NEPFEIENQH-LQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 263

Query: 255 VVCFS 259
              ++
Sbjct: 264 SSLYT 268


>gi|218665621|ref|YP_002426126.1| sensory box-containing diguanylate cyclase, putative
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218517834|gb|ACK78420.1| sensory box-containing diguanylate cyclase, putative
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 1057

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 98/214 (45%), Gaps = 16/214 (7%)

Query: 52  YIGLTPFYGLEYILVENL----SLVIISITISLLLGYISGSILKE-LFISYNRISQLSRI 106
           +   TPF  +++I  E +    +        SLL   +    LKE L +   + ++++R 
Sbjct: 540 WRDGTPFAVIKFISTEQVFDADTTTACERLASLLGHSLDEHDLKEHLRLLQEQEAKIART 599

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N           I+    +N+ L++   D+D FK +ND +GH  GD+V+  L 
Sbjct: 600 DLLTGLPNRRFLEIQMEQAIARAERHNQLLAVCMLDLDGFKPVNDTYGHGAGDEVLVALG 659

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHI 218
            +L        FV RLGG+EF           + A +   +   I  + I +S+G S+ I
Sbjct: 660 KRLSEALRKSDFVARLGGDEFVLLVEDLEDLDDLANIMKKIEDTI-TAPIPLSNGKSVQI 718

Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKS 250
             S G+A       +    ++  ADQA+Y +K +
Sbjct: 719 GASMGVALYPFGDTDTGDKLLRLADQAMYESKAN 752


>gi|218549280|ref|YP_002383071.1| diguanylate cyclase; GGDEF domain; PLP-dependent transferase
           [Escherichia fergusonii ATCC 35469]
 gi|218356821|emb|CAQ89449.1| Putative diguanylate cyclase; GGDEF domain; putative PLP-dependent
           transferase [Escherichia fergusonii ATCC 35469]
          Length = 570

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNH-------SAFIS 120
           L+L+    T  L++ +I    ++  +F+  + +   +  D L+ L N             
Sbjct: 362 LTLLWALFTTMLIISWIVIRKMVSNMFVLQSSLQWQAWHDTLTRLYNRGALFEKARFLAQ 421

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 ECRENQRPFSVIQVDLDHFKSINDRFGHQAGDRVLSHAAGLISRSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIY 238
                 ++  +A  +A  +R  +   +I I+   ++ I+ S G++  E         +  
Sbjct: 482 CIVLPCANLAQAQEIAERIRLRLNEKEILIARSTTLRISASLGVSSTEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD  LY+AK++GRNRV  
Sbjct: 542 LADGRLYLAKQAGRNRVCA 560


>gi|193212648|ref|YP_001998601.1| diguanylate cyclase [Chlorobaculum parvum NCIB 8327]
 gi|193086125|gb|ACF11401.1| diguanylate cyclase [Chlorobaculum parvum NCIB 8327]
          Length = 429

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 64/267 (23%), Positives = 110/267 (41%), Gaps = 41/267 (15%)

Query: 28  MIYFSIFFSIFIATVIFIANIFL---FYIGLTPFYGLEYILVE----------------- 67
           +IY+ +F +I +  ++      L   +   + P + L   L++                 
Sbjct: 156 LIYYLVFITILLLFIVLAGGRLLASNYRHSIIPLHQLAQRLMQLNRDLPESLHDTAEAAE 215

Query: 68  ------NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF--- 118
                 N S  + S+T S+       S+  ++     ++ ++   D  +GL N+  F   
Sbjct: 216 DMLTGPNPSAEMRSVTSSV------ASLCHDIEAKNKKLDEIYIRDEKTGLYNYRHFKEH 269

Query: 119 ----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
               +     +   +++   DIDYFK  ND  GH  GDKV+  +++ +           R
Sbjct: 270 LIIDVERAKRFGASIALAMIDIDYFKMYNDLHGHIEGDKVLVRIAEIIHQECRATDIPSR 329

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAGIAERCHK-EP 232
            GGEEFA     +  Q A  +A  L+ II           P   +T+S G+A        
Sbjct: 330 FGGEEFALLFPKTDRQTALEIAERLQSIISAEPFEHEHTQPEGQLTVSIGVAALPDDATD 389

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFS 259
             +++  AD+ALY AK  GRNRV+ F+
Sbjct: 390 WYSLVNNADKALYKAKSLGRNRVLGFT 416


>gi|120556685|ref|YP_961036.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120326534|gb|ABM20849.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 361

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 107/233 (45%), Gaps = 17/233 (7%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
            ++FF + +   IF   +F+  + +  F         +   +  S+ +S L   I   ++
Sbjct: 111 IALFFLLPLREAIFCNVVFVSVMAVVSFLKFPE---ADFWRITFSLGLSCLFAMIFAWLV 167

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
             L      +++L+  D L+G LN S     L         Y    S+V  D+DYFK IN
Sbjct: 168 GRLQA---ELTRLATTDPLTGCLNRSQLADILNSQIQMRERYERVSSLVLIDLDYFKTIN 224

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GDKV+  ++ ++         + R+GGEEF      + +++A  LA+ L   I
Sbjct: 225 DRWGHLAGDKVLKEMALRVRKRLRESDQLFRIGGEEFMVVLPETRQKDADTLAHQLLTSI 284

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                       I +T SA +AE    E  S  + RADQALY AK  GRN+VV
Sbjct: 285 SARPFL----DDIRVTASASVAEVTQGETWSVWLNRADQALYEAKSRGRNQVV 333


>gi|313105724|ref|ZP_07791987.1| hypothetical protein PA39016_000110021 [Pseudomonas aeruginosa
           39016]
 gi|310878489|gb|EFQ37083.1| hypothetical protein PA39016_000110021 [Pseudomonas aeruginosa
           39016]
          Length = 661

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 10/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
             + +      ++ +++  D L+GL N  AF   LG           +L++++ D+D FK
Sbjct: 481 RDVSDQIAYQQQLLEMAYRDPLTGLGNRKAFDEQLGQALLRAGSGGSELALLYLDLDRFK 540

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND FGH VGD ++  +++++      P    RLGG+EFA     S E     LA  L 
Sbjct: 541 EVNDRFGHDVGDALLRTVAERVRSTLRQPDKAYRLGGDEFAVLLEDSQENNPQRLAERLL 600

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +    I ++      +T S GIA    H      ++  AD A+Y AK+  RN    +
Sbjct: 601 AAL-VQPIALNGERIDFVTPSIGIALYPRHAGDAEGLVRAADSAMYEAKRQ-RNHYCLY 657


>gi|170725236|ref|YP_001759262.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella woodyi ATCC 51908]
 gi|169810583|gb|ACA85167.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella woodyi ATCC 51908]
          Length = 583

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 15/191 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQI 142
           + + E  ++ N+I+ ++  D L+G+ N    +  L            ++++ D+D FKQ+
Sbjct: 140 TDITERIVAENKITFMAYHDALTGVANRRLLMEHLAQELTKPCGHCSALLYIDLDNFKQV 199

Query: 143 NDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAI------L 195
           ND++GH VGD ++  +SD L          V R+GG+EF        E  A +      +
Sbjct: 200 NDHYGHTVGDLLLCEVSDVLSEYAQDEEDLVARMGGDEFILFLSNLGENSALVTQKLVQI 259

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
              +R  ++ S+  +     I IT S G+    H     S I   AD ALY +K +G+N+
Sbjct: 260 TEKIR--VQLSEPVLLGKLKIQITSSIGVVTLDHATMSHSDIFKYADAALYHSKNTGKNQ 317

Query: 255 VVCFSDIENNT 265
           V  + +    +
Sbjct: 318 VRFYDEELEQS 328


>gi|78356218|ref|YP_387667.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218623|gb|ABB37972.1| diguanylate cyclase (GGDEF domain) [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 674

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/181 (31%), Positives = 86/181 (47%), Gaps = 14/181 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
            + +L      + Q++  D L+GL N   F   L ++ E+       L +   D+D+FK+
Sbjct: 495 DISKLKSYQQELEQMTMTDYLTGLFNRRHFFRQLETHLEQYKRRQYNLCVALLDLDHFKR 554

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH  GD VI   +  L         V R GGEEF    L S  +EA  + + L K
Sbjct: 555 INDTYGHMAGDSVIREFALLLKESLRPYDVVARFGGEEFIILLLDSGREEALGILDRLLK 614

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTI-----IYRADQALYVAKKSGRNRVV 256
            +     + + G  + +T S GIAE   + P S +     +  ADQ LY+AK +GRN + 
Sbjct: 615 KVSGHTFD-AEGHHLRVTFSGGIAE-ADELPASELTPKRIVAAADQRLYLAKTAGRNTIR 672

Query: 257 C 257
            
Sbjct: 673 I 673


>gi|325528192|gb|EGD05373.1| putative diguanylate cyclase [Burkholderia sp. TJI49]
          Length = 341

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 9/186 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKL-----SIVFF 134
             I    +    ++   I  L+R D L+GL N     + LG        L     ++++ 
Sbjct: 150 AVIIVEDVTARRLTERHIRHLARHDALTGLPNRHELHAELGRMLAQRSPLPDVAAAVMYL 209

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND FGH  GD+V+  ++++L           R+GG+EF  A  G++    + 
Sbjct: 210 DLDGFKAINDRFGHQAGDEVLMQVAERLGRTLLNGELAARIGGDEFVVAIDGTTTHACST 269

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           LA ++ + I ++   +S G ++   IS GIA    +     +I +AD ALY AK +G+  
Sbjct: 270 LAAEIIRQI-SAPYTLSIGETVSFGISIGIALDDGRRSPDELIRQADSALYDAKSAGKGM 328

Query: 255 VVCFSD 260
              +S+
Sbjct: 329 YRFYSN 334


>gi|114321598|ref|YP_743281.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227992|gb|ABI57791.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 802

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 11/180 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           + ++L     R++ L+  D L+ L N     + L           ++++++F D+D FK 
Sbjct: 355 VERQLRQHQARLTHLANHDPLTDLPNRLLLTTRLEQAVARATGSGQRVAVLFLDLDRFKN 414

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLR 200
           IND+ GH VGD ++  L+++L         V RLGG+EF     G S+ E     A +L 
Sbjct: 415 INDSLGHAVGDDLLRILAERLRSQVEAN-TVARLGGDEFIVLLDGISDLELVDQQARELL 473

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +++  S  ++    S+ +  S GI+      +  S +I +AD A+Y+AK  GRN    ++
Sbjct: 474 ELVAES-FSVGGWRSLQVGGSIGISLFPDNAQDASELITQADAAMYLAKAEGRNTYRYYN 532


>gi|114561281|ref|YP_748794.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114332574|gb|ABI69956.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 426

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 75/267 (28%), Positives = 126/267 (47%), Gaps = 20/267 (7%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSI----FFSIFIATVIFIANIFLFYIGLTPFYGLEYILV 66
           I L    N  +   H  + Y ++    FF+I +  +I    + LF   L      + +  
Sbjct: 151 ITLSGIDNFRAVKKHLPLHYAALINVPFFTIGLLFIIRAVVLLLFPDELANISAADKL-- 208

Query: 67  ENLSLVIISITISLLLGYIS--GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG- 123
            N SLV+ S  I LLL  +   G+ L  L     ++++L+  D L+GL N  + ++ L  
Sbjct: 209 -NSSLVMWSYIILLLLTNLVLFGNALTRLVY---KVARLANKDQLTGLWNRHSLLNKLEE 264

Query: 124 ------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                       S++  D+D+FK+IND +GH  GD V+   +D L        FV R GG
Sbjct: 265 VDALWLRNGLAYSLMVLDLDHFKRINDTYGHLAGDMVLKNTADILQKSLRKIDFVCRYGG 324

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EEF      ++++EA I+A  +++ I  + + +     I+ T+S G A       I  ++
Sbjct: 325 EEFLIILPLTNKKEAQIVAEKVQQKINENTV-LWQKTHINTTLSIGYATCKTHLSIEQLL 383

Query: 238 YRADQALYVAKKSGRNRVVCFSDIENN 264
             AD A+Y+AK  GRN +     +E++
Sbjct: 384 QLADDAMYLAKSKGRNTICSMDAMEDS 410


>gi|289670563|ref|ZP_06491638.1| putative sensor protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 793

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 10/172 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           +EL  +   +S  +  D L+GLLN +  +++L             L++V  D+D+FK +N
Sbjct: 612 RELEAARAELSLKATHDELTGLLNRAGILAALREMLLHAARSGRPLAVVLIDLDHFKLVN 671

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD V+A +  ++  +      +GR GGEE  A   G +      L    R I 
Sbjct: 672 DQHGHLAGDAVLAGVGRRVDTLVRGDDRIGRYGGEELLALLPGLNLDATHRLEALHRDIC 731

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  I    G  +H+T S G+A     E +  ++ RAD ALY AK+SGRNR+
Sbjct: 732 GDYPI---DGGWLHVTCSIGVAWFQPGETLEQLLARADAALYSAKRSGRNRI 780


>gi|316935123|ref|YP_004110105.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
 gi|315602837|gb|ADU45372.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
          Length = 741

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 104/236 (44%), Gaps = 34/236 (14%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS 88
           I+ S    I I   + IA +F        F+GL+    +                 +   
Sbjct: 519 IFASRLLGIVITLQVVIAALFY-------FFGLDRGARDR----------------VQRQ 555

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           + +EL      +++ +  D L+GL N S F   L              S++ FDIDYFK+
Sbjct: 556 LREELQDRTRDLARQAATDALTGLHNRSKFNMRLDEELARSQRTGRPFSLIIFDIDYFKE 615

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GHP+GD+V+  LS  +         + R GGEEFA     +    AA  A  LR 
Sbjct: 616 VNDVYGHPMGDQVLIRLSQTVAASVRRADLLARWGGEEFAVLLADTDAAAAAETAKKLRL 675

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++ ++           IT S G+A+    +   T++ RAD ALY AK +GRNRV  
Sbjct: 676 LVAHTIFE----QVGSITASFGVAQFMPGDNAETLLARADNALYRAKLNGRNRVEI 727


>gi|254498378|ref|ZP_05111110.1| hypothetical protein LDG_2734 [Legionella drancourtii LLAP12]
 gi|254352400|gb|EET11203.1| hypothetical protein LDG_2734 [Legionella drancourtii LLAP12]
          Length = 412

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 76/167 (45%), Gaps = 8/167 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S+L+  D L+ L N              +      L +   DID FK+ ND + H  GD
Sbjct: 241 LSELTLHDPLTNLYNRRHLNEFLSRELIRIAREKNTLCVAMLDIDNFKKFNDTYSHLAGD 300

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  +   L+  F       R GGEEFA      +   A    +  R+ ++N+      
Sbjct: 301 EVLKLIGQLLLSDFRESDIPFRFGGEEFAVIFPNMTLDNAFDRMDQFREQLKNTIAYYKD 360

Query: 213 GPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            P   ITIS GIAE   H   I  II  AD ALY AK++G++RV  +
Sbjct: 361 RPLPGITISIGIAEAPKHGATIEDIIKAADHALYAAKEAGKDRVKSY 407


>gi|229491123|ref|ZP_04384951.1| diguanylate cyclase/phosphodiesterase [Rhodococcus erythropolis
           SK121]
 gi|229321861|gb|EEN87654.1| diguanylate cyclase/phosphodiesterase [Rhodococcus erythropolis
           SK121]
          Length = 522

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 116/244 (47%), Gaps = 25/244 (10%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG-SILK 91
           +   + IA +  I  +    +G      L+ ++V     V++   +  +L  +   ++L+
Sbjct: 281 LLPYLLIAVIATIVTVQALIVG-----NLDAVVVILGVGVLVLALVRQILTLLENDALLQ 335

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQIND 144
           ++  + + +   +  D L+ L N +AF     S  E          ++  D+D FKQIND
Sbjct: 336 QISAAQDELRYRAHHDPLTELANRAAFDEHFASAIENYRHTNSDWVLMLVDLDDFKQIND 395

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GHP GD+++  L+ +L        FV R GG+EF     G+   +A ++A   R+I++
Sbjct: 396 RYGHPAGDRLLVALTARLREAVPEGAFVARFGGDEFTVLLQGT-IDDAVVVA---RRIVD 451

Query: 205 NSQINISSGPSIHITISAGIAERCHKE--------PISTIIYRADQALYVAKKSGRNRVV 256
             + + ++  S+ +  S G+A     +           T++ +AD A+Y AK+SG+  VV
Sbjct: 452 ALRSDQTADTSVSVGASVGVAHFESAQFEFGDEPLSAHTLLRQADAAMYEAKRSGKGAVV 511

Query: 257 CFSD 260
            + D
Sbjct: 512 VYGD 515


>gi|152999355|ref|YP_001365036.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|151363973|gb|ABS06973.1| diguanylate cyclase [Shewanella baltica OS185]
          Length = 507

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 82/176 (46%), Gaps = 11/176 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           ++ K+L  S   +  LS  D L+ L N   F            S    + +V  DIDYFK
Sbjct: 333 TLRKQLEASNAELEFLSTHDPLTKLYNRHYFNRLFINNEQHDKSAKAGMCLVMIDIDYFK 392

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND  GH VGD+++  +S  L         V R GGEEF      SS      L   + 
Sbjct: 393 EINDTLGHNVGDRILEQVSQVLQHCVRESDVVARWGGEEFVILCQHSSLPLVESLCVRIA 452

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + I++ Q       ++ +T S G+A+    EP+     RAD+ALY AK  GRN++ 
Sbjct: 453 ERIKHYQFT----DNVQLTCSFGVAKLADNEPMMLCFERADRALYRAKAQGRNQMC 504


>gi|298242665|ref|ZP_06966472.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Ktedonobacter racemifer DSM 44963]
 gi|297555719|gb|EFH89583.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Ktedonobacter racemifer DSM 44963]
          Length = 944

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/195 (30%), Positives = 88/195 (45%), Gaps = 13/195 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFF 134
           L      +L+E    Y+    L+  D ++GL NH A +  L +         E+ ++ F 
Sbjct: 525 LALSQQKLLQERDQLYHEQRLLAITDAVTGLSNHRALMIRLDAAFAYHSKQRERYALFFI 584

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D+FK +ND +GH VGD ++  +  +L  V G    VGR GGEEF A            
Sbjct: 585 DLDHFKHVNDQYGHLVGDFLLHEVGARLARVVGDGGIVGRYGGEEFVALLWVRDLSHMRE 644

Query: 195 LANDLRKIIENSQINISSGPS-----IHITISAGIAERC-HKEPISTIIYRADQALYVAK 248
           +A  LR  I                 + +T+S G+A    H   +  +I +AD+A+Y AK
Sbjct: 645 VAERLRMEIMKEPFLWRQERESVPICLRMTVSIGVAVYPLHGTRLQELIAQADRAMYRAK 704

Query: 249 KSGRNRVVCFSDIEN 263
            SGRN V      E 
Sbjct: 705 SSGRNCVCIVDQGER 719


>gi|262373376|ref|ZP_06066655.1| GGDEF domain-containing protein [Acinetobacter junii SH205]
 gi|262313401|gb|EEY94486.1| GGDEF domain-containing protein [Acinetobacter junii SH205]
          Length = 429

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 64/252 (25%), Positives = 109/252 (43%), Gaps = 21/252 (8%)

Query: 22  FSPHTFMIYFSIF---FSIFIATVIFIANIFLF----YIGLTPFYGLEYILVENLSLVII 74
             P   +I+ ++    FS+ I T I  A I       Y+ L P   L   +  ++   +I
Sbjct: 181 LYPIAPLIWCALAYRHFSVVIITSITCAFIIHHVSENYLQLYPHEYLNNTI--SIRFGLI 238

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNE 127
            +TI+ L       +  +L      +  +   D L+  L    F+              +
Sbjct: 239 MMTIAPLTVSNINMVRSKLI---QELQHIIAHDELTSSLTRRQFLQSVQLLHAQAQKAQQ 295

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
             + +  D+D+FK++ND +GH +GDK + +   ++  +      +GRLGGEEFA      
Sbjct: 296 TTAFLMLDLDHFKKVNDTYGHQMGDKALKYCVQEIHSLLRPNDLLGRLGGEEFAIFMSDI 355

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALY 245
               A   A ++R  I    I ++     +I +S GI      +++ I  +  +AD ALY
Sbjct: 356 DPDTAFQYAENIRLNISKMPIPLNDQQQFYIQVSIGICLCTPENQQSIDALFKQADDALY 415

Query: 246 VAKKSGRNRVVC 257
            AK  GRN+VV 
Sbjct: 416 QAKHQGRNQVVI 427


>gi|260597954|ref|YP_003210525.1| hypothetical protein CTU_21620 [Cronobacter turicensis z3032]
 gi|260217131|emb|CBA30932.1| Uncharacterized protein yneF [Cronobacter turicensis z3032]
          Length = 445

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 111/256 (43%), Gaps = 23/256 (8%)

Query: 24  PHTFMIYFSIFFSI----FIATVIFIANIFLFYIGLTPFYGLEYILVENL---SLVIISI 76
           P   +I+ ++ + +    F+     +  I L   G+      +  +   +    L + +I
Sbjct: 182 PVAALIWCAVRYPLNVTCFLTLCTGVLQIILVSAGIIEISSAKLSVGSQMFSTRLGVATI 241

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKL 129
            I   +  +S S +  L     +IS+ +  D L+G+ + S    +L             L
Sbjct: 242 AICPAIVAVSVSAINSLLA---QISRRANYDHLTGVYSRSGLFEALARDDNNPALAGRPL 298

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            ++  D+D+FK INDN+GH  GD V+A   ++L  + G    V R+GGEEF       + 
Sbjct: 299 CVMLMDLDHFKSINDNYGHECGDAVLATFGEKLRELTGDAGRVARMGGEEFVVVCPDMTL 358

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-----KEPISTIIYRADQAL 244
             A  LA  LR+ +    + +  G ++  ++S G+           +  + ++  AD  L
Sbjct: 359 DRACQLAETLRQQVAGEPV-VCEGQTLSFSVSIGLGYEAAPQDRVSDTFTRLMREADSLL 417

Query: 245 YVAKKSGRNRVVCFSD 260
           Y +K+ GRNR     +
Sbjct: 418 YQSKREGRNRTSVHDE 433


>gi|152992906|ref|YP_001358627.1| hypothetical protein SUN_1317 [Sulfurovum sp. NBC37-1]
 gi|151424767|dbj|BAF72270.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 866

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 13/189 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           + +        ++  ++  D L+ L N       L             L + F DID FK
Sbjct: 302 TDITTKKEHQKQLEHIAHYDVLTSLPNRVLLADRLSQALHSSRRNNLVLGVAFIDIDGFK 361

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           +IND +GH  GD ++  LS ++         + R+GG+EF          ++   +   L
Sbjct: 362 EINDTYGHNTGDDLLITLSSRMKGALRNNDTLARIGGDEFIVVFTDLKKPEDCHPMLERL 421

Query: 200 RKIIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            ++   S   I +  S+ ++ S G  IA    +     +I +ADQA+Y AK+SG+NR   
Sbjct: 422 LQV--TSAPIILNNKSMSVSASIGLSIAAPDKEIDADQLIRQADQAMYQAKQSGKNRYSV 479

Query: 258 FSDIENNTC 266
           F DIE ++ 
Sbjct: 480 F-DIEKDSA 487


>gi|126668634|ref|ZP_01739586.1| sensory box protein [Marinobacter sp. ELB17]
 gi|126626893|gb|EAZ97538.1| sensory box protein [Marinobacter sp. ELB17]
          Length = 400

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 19/219 (8%)

Query: 58  FYGLEYILVENLSLVIISITISLLL-------GYIS-GSILKELFISYNRISQLSRIDCL 109
           ++G  +   ++  L +  +TIS++L        Y+S  S +  L+     I  L+  D L
Sbjct: 181 WHGEIWNRRKDGELYLQRMTISMVLDDAGEPMRYVSVFSDITALWQKDEHIRHLAFHDAL 240

Query: 110 SGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           + L N +  +  +              +++F D+D FK +ND  GH  GD ++  ++ +L
Sbjct: 241 TDLPNRTLLMDRINQQILHANREESHFALMFLDLDGFKLVNDQLGHKFGDDLLKDVAKRL 300

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           + +  +   + R+GG+EF           E   +AN +   I N  I I  G  + I +S
Sbjct: 301 LALVRSSDTIARVGGDEFIFLLNNPRGRDEITEVANRIVASI-NEPIEIL-GVVVQIGVS 358

Query: 222 AGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            GIA      +  S +I  AD A+Y AK  G+N +  FS
Sbjct: 359 LGIATFPADGDSSSDLIINADSAMYAAKSVGKNNIRFFS 397


>gi|116251057|ref|YP_766895.1| sensory box GGDEF/EAL domain-containing protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115255705|emb|CAK06786.1| putative sensory box GGDEF/EAL domain protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 765

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 13/194 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           +T+  L  +I+G  + E     +RI  ++  D L+GL N +     L          N K
Sbjct: 311 MTLVALATHIAGIAI-ERKRVDDRIHFMAHHDDLTGLPNRAFLKERLASILDQARRNNRK 369

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +++ + D+D FK IND  GH  GD+V+   + ++         V RLGG+EF    +  S
Sbjct: 370 VTVAYIDLDNFKDINDGRGHAAGDEVLKETAARMANSVRASDMVVRLGGDEFLVVLVHQS 429

Query: 189 EQEA--AILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALY 245
             +A       DL+K I N  I  ++G  I +T S G+A           ++  AD+A+Y
Sbjct: 430 SHDAGITRRLRDLQKAI-NRPIRGANG-EITVTSSIGVAAFPFDGATSEELLANADRAMY 487

Query: 246 VAKKSGRNRVVCFS 259
            AK+ GRN +    
Sbjct: 488 RAKELGRNTLQHHD 501


>gi|95930593|ref|ZP_01313328.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95133428|gb|EAT15092.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 541

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 11/180 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           ++E       + +LSR D L+ L+N   F   L         +   ++++  D+DYFK  
Sbjct: 349 IRERESVQQELERLSRYDGLTELINRRYFDELLDIEWRDACRHQHWVTVLMIDVDYFKIY 408

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD+ +A L+      F      V R GGEEF      ++  EA  +A+ L  
Sbjct: 409 NDCYGHLQGDECLARLAQLFKNKFKRARDVVARYGGEEFVCLLPMTNPAEAQGMADALLG 468

Query: 202 IIENSQINISSGP-SIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCF 258
           ++  S +       S  IT+S G++       +    +I +AD ALY AK+ GRN++  +
Sbjct: 469 VVRGSGMEHCGSKCSGVITVSIGVSSMIPDAYQTADHLISQADDALYRAKQKGRNQLQIY 528


>gi|332767611|gb|EGJ97804.1| diguanylate cyclase domain protein [Shigella flexneri 2930-71]
          Length = 208

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140
            + E      ++   +  D ++GLLN   F        +  L    +  S++  D D FK
Sbjct: 36  DITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA-IAQDYSLLLIDTDRFK 94

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD+V+  L+  L         V R GGEEF      +    A  LA  +R
Sbjct: 95  HINDLYGHSKGDEVLCALARPLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 154

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  ++++IS  P    T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 155 --VSVAKVSISGLP--RFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRV 205


>gi|300871834|ref|YP_003786707.1| GGDEF domain-containing protein [Brachyspira pilosicoli 95/1000]
 gi|300689535|gb|ADK32206.1| GGDEF domain protein [Brachyspira pilosicoli 95/1000]
          Length = 346

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 103/231 (44%), Gaps = 20/231 (8%)

Query: 51  FYIGLTPFYGLEYIL----VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
           F IG+   Y L  I+    + N+ L +    I L         +KEL    + +++ S I
Sbjct: 117 FPIGIVDIYTLYDIILKLKIRNIRLSV--DNIELESSIEKDRFIKELKKEIDILNEQSII 174

Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D ++ L N   F             Y   +S++F D+D+FK +ND +GH  G+ V+  + 
Sbjct: 175 DHITNLYNIRYFYKVIEEEAERAKRYKYTISLIFMDLDHFKNVNDIYGHDCGNLVLHEIG 234

Query: 160 DQLVVVF----GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L               R GGEEF      +++ EA  +   +R+ +EN   N  S   
Sbjct: 235 RLLTSSSDNILRRSDISFRYGGEEFIIICPNTNKDEAFTVGERIRRTVENKVFNYES-QD 293

Query: 216 IHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           I ITIS GI+E  H     I   +  +D A+Y AK  GRN+V+ + +  + 
Sbjct: 294 IKITISIGISEYRHNSKTSIFQSVKESDMAMYEAKHQGRNKVIIYDERMSE 344


>gi|254459218|ref|ZP_05072640.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Campylobacterales bacterium GD 1]
 gi|207084111|gb|EDZ61401.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Campylobacterales bacterium GD 1]
          Length = 514

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 13/190 (6%)

Query: 81  LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           +LGY      +  L      I  L+  D L+GL N       +          N + +++
Sbjct: 320 ILGYRGIDRDITPLKQKQKEIEHLAFYDTLTGLANRQNINDRISQEINYTRRNNFESALL 379

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE--Q 190
           F D+D FK IND  GH  GD+V+  +S +++    +    GR+GG+EF     G  E  +
Sbjct: 380 FLDLDDFKVINDTHGHDHGDEVLKTVSHRILKSIRSFDIAGRIGGDEFVILVRGVQENNE 439

Query: 191 EAAILANDLRKII--ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVA 247
            +      L K +  E ++  + +  S H+ +S G+A      + +  I+  AD A+Y A
Sbjct: 440 NSLDHLESLLKRVLQEINEPIVVNSFSHHVGVSIGVAILPRDGDNLEEILKCADNAMYEA 499

Query: 248 KKSGRNRVVC 257
           K  G+NRVV 
Sbjct: 500 KHLGKNRVVF 509


>gi|170077470|ref|YP_001734108.1| PleD protein [Synechococcus sp. PCC 7002]
 gi|169885139|gb|ACA98852.1| PleD protein [Synechococcus sp. PCC 7002]
          Length = 516

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 92/182 (50%), Gaps = 12/182 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
           L  +   + +L  +D L+ + N   F   L           + L+++ FD+DYFK+ ND+
Sbjct: 330 LRQTNQELQKLVHLDGLTQIANRRCFNQRLTAEWHRLYREQKPLALILFDVDYFKRYNDS 389

Query: 146 FGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD+ +  ++  +   +      V R GGEEF      ++++ A I+A  +R+ + 
Sbjct: 390 YGHQQGDECLIQIAQAVKHLLKRPADLVARYGGEEFVVVLPNTTQEGATIVAKRIRRTVL 449

Query: 205 NSQINISSGP--SIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             QI  ++       +T+S G+       +E   T + +ADQALY+AK+ GRNR+V   +
Sbjct: 450 ELQIAHNATEINEAIVTVSLGVVSGIPQSQEKPLTFVKKADQALYLAKQQGRNRIVVAGE 509

Query: 261 IE 262
            E
Sbjct: 510 SE 511


>gi|126660463|ref|ZP_01731572.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Cyanothece sp. CCY0110]
 gi|126618276|gb|EAZ89036.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Cyanothece sp. CCY0110]
          Length = 608

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 89/182 (48%), Gaps = 12/182 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQI 142
           ++L  + +R+ +++  D L+ L N ++ I  L           N + +++F D D FK I
Sbjct: 166 QQLQEANDRLQKIALYDSLTNLANRNSLIEELQQSLNRIKLDNNHQFAVLFLDCDRFKII 225

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRK 201
           ND+ GH VG+ ++  +S  L  + G    + R+GG+EFA      S  ++A  LA ++  
Sbjct: 226 NDSLGHLVGNLLLKKISQALKTIIGKNETLARIGGDEFAILLSDISGVEQAKELAQNILN 285

Query: 202 IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +++  +   S+   I I +S GI       +    II  AD A+Y AK  GR +   F+ 
Sbjct: 286 LLK--KPFYSNSQEIFINVSIGIVLSHPDYQDPENIIRDADMAMYKAKSLGRGQYQIFTP 343

Query: 261 IE 262
             
Sbjct: 344 EM 345


>gi|297581000|ref|ZP_06942925.1| sensory box/GGDEF family protein [Vibrio cholerae RC385]
 gi|297534826|gb|EFH73662.1| sensory box/GGDEF family protein [Vibrio cholerae RC385]
          Length = 579

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 11/179 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +LS +D L+ + N   F   L           + LSI+  D+DYFK  N
Sbjct: 397 EQLEAANQELERLSFLDSLTHVANRRRFDEQLHTLWHLHVREGKPLSIILCDVDYFKDYN 456

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH +GD+ +  ++     V       V R GGEEF      + +  A ++A  + + 
Sbjct: 457 DAYGHLMGDETLKQIAIAFTQVANRHSDCVARYGGEEFGILLPNTPQTGAILVAERIHEK 516

Query: 203 IENSQINISSGPSI-HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +    I          IT+S GI       ++    ++  AD+ALY AK +GRN+   +
Sbjct: 517 VRGLAITHDHSKVADRITVSLGIVTLIPRPEDVPEQMVELADRALYQAKANGRNQTSIY 575


>gi|238791632|ref|ZP_04635270.1| Diguanylate cyclase [Yersinia intermedia ATCC 29909]
 gi|238729248|gb|EEQ20764.1| Diguanylate cyclase [Yersinia intermedia ATCC 29909]
          Length = 300

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 106/228 (46%), Gaps = 10/228 (4%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR 99
              + I+   L        +  E   ++  + + + I    LLG ++    K L  S   
Sbjct: 75  GLALQISCSLLTAWIFNLPFKPETSPLQVYACLPMIIIYPSLLGLVTYRTAKRLAESKEE 134

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + ++S  D L+GL N   +   L         Y    +++  DID FK IND FGH VGD
Sbjct: 135 LLRISVRDGLTGLYNRRHWEHQLHNQFDSCRRYQHGATLILLDIDNFKAINDTFGHAVGD 194

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + I  L+++L++       VGR GG+EF A    ++ ++   +   +++ +       + 
Sbjct: 195 EAITILAEELLLGLRAIDIVGRYGGDEFGAILPNTTAEQTREVLTRIQEKLAALVF--TQ 252

Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            P++ + +SAGIA+  H        +  AD ALY+AK +GRNR+   S
Sbjct: 253 APTLQLRVSAGIADYRHDMINYQQWLKAADSALYLAKDNGRNRIELAS 300


>gi|329906559|ref|ZP_08274414.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Oxalobacteraceae bacterium IMCC9480]
 gi|327547249|gb|EGF32098.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Oxalobacteraceae bacterium IMCC9480]
          Length = 258

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 82/175 (46%), Gaps = 11/175 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNF 146
             S  RI  L+  D L+GL N   F+  L            ++ ++F D+D FK+IND  
Sbjct: 77  KRSDERIRFLAHHDDLTGLPNRMRFLQELSLALARAARSGHQVGLLFLDLDRFKEINDTL 136

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD V+  ++++L         V RLGG+EF    +     ++ +L+   RK+ E  
Sbjct: 137 GHHVGDAVLREVANRLRANVREVDMVARLGGDEFVV--MAEDFSDSTVLSGIARKLTEQI 194

Query: 207 QIN-ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +  +      H+T S GI+      + I  +I  AD A+Y  K+ GRN    F 
Sbjct: 195 ALPMVIDQQDCHLTASIGISTYPDDGDNIPALIRSADIAMYRVKEGGRNSHQFFD 249


>gi|117620876|ref|YP_856335.1| PAS/GGDEF domain-containing protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562283|gb|ABK39231.1| PAS:GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 643

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 6/187 (3%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFK 140
            ++   + +  +       L+  D L+GLLN    + SL +Y     + ++VF D+D FK
Sbjct: 196 LLTMRDITDRKLEELEHRHLAWHDSLTGLLNRYGLMKSLEAYCGLGGRFALVFMDLDNFK 255

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILANDL 199
            +NDN+GH  GD+++  ++ +L  +    + + RLGG+EF A      S   A  +A+ +
Sbjct: 256 LVNDNYGHKAGDRLLERVAGRLKQICPRDVELARLGGDEFTALVPLSHSSDRAQEVADLM 315

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
              +    + +S  P + I  S GIA      +    +I RAD A+Y AK+ GR R   F
Sbjct: 316 LSQM-TKPLQLSGVPEVTIGGSIGIAIYPDDADDGDNLITRADMAMYQAKQMGRLRWQRF 374

Query: 259 SDIENNT 265
           +     T
Sbjct: 375 TPSMQQT 381


>gi|146293032|ref|YP_001183456.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
 gi|145564722|gb|ABP75657.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
          Length = 937

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 95/219 (43%), Gaps = 15/219 (6%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI---LKELFISYNRISQLSRID 107
           F +     + L++I     S VI+SI +  +L  ++  +   +     +  R+  ++  D
Sbjct: 721 FTVSTDNSHYLQWIRYLLFSAVILSIVMIAVLA-VNRRLNLEITRRISAEKRLQHVANHD 779

Query: 108 CLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+ L N +     L              +++F D+D FKQIND  GHP+GD ++  ++ 
Sbjct: 780 VLTQLPNRALLDDRLAQALLSHQRDQAYFALLFIDLDEFKQINDQHGHPIGDSILTQVAQ 839

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            L+        V R GG+EF            A  +A+++ + +  S   +  G ++ + 
Sbjct: 840 ILLSSVRNSDTVARFGGDEFVILLNRVQDLDAATQVADNILQSL--SSPLLIEGQTVRVA 897

Query: 220 ISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+       +    ++ +ADQ +Y AK SG      
Sbjct: 898 VSIGVVLYPRDGDTAIGLLKKADQLMYQAKSSGGRCYRI 936


>gi|317483714|ref|ZP_07942661.1| GGDEF domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316925030|gb|EFV46169.1| GGDEF domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 308

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/189 (30%), Positives = 85/189 (44%), Gaps = 17/189 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDID 137
           + G+ L+E      +   LS  D L+GL N   F++             + +S +  DID
Sbjct: 111 LIGNTLQENRRLIEKYRNLSLTDMLTGLPNRRGFLALAEKSFARASRKRQSISFIMADID 170

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK++ND  GH  GD+V+  ++ + +          R GGEEF      +    AA++A 
Sbjct: 171 HFKKVNDRHGHEAGDEVLRVVAQRFLDCLRVEDICCRYGGEEFLVMLYDTDVIRAALVAE 230

Query: 198 DLRKIIENSQINISSGPSIHITISAGI-----AERCHKEPISTIIYRA----DQALYVAK 248
            LRK I    I+   G  I + IS G+     A+          I RA    D  LY AK
Sbjct: 231 RLRKSIAGKPISTR-GEEIRVAISLGVTEVVAADYAGTRKCHAEIRRAVQVSDAFLYKAK 289

Query: 249 KSGRNRVVC 257
           K+GRNRV  
Sbjct: 290 KAGRNRVAA 298


>gi|254498558|ref|ZP_05111279.1| sensory box protein [Legionella drancourtii LLAP12]
 gi|254352205|gb|EET11019.1| sensory box protein [Legionella drancourtii LLAP12]
          Length = 766

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 12/186 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + +      ++ Q +  D L+ L N    I  +          N  L+ +F D+D FK 
Sbjct: 325 DITQRREMEKQLIQQATHDSLTDLPNRVLLIDRVDQAILQARKKNSILAFLFLDLDRFKM 384

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           IND  GH +GDK++  +S++L++       V RLGG+EF        SE++A  +A+ + 
Sbjct: 385 INDTLGHSIGDKLLQAVSNRLLIATNDFDTVCRLGGDEFVILLQDIGSEKQAQQIADKIL 444

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + I  S+        + IT S GI+          +++  AD ++Y AK SGR     + 
Sbjct: 445 RTI--SKPFPIDQHDLQITGSIGISYFPKDGTDYESLMKSADLSMYHAKDSGRATYRTY- 501

Query: 260 DIENNT 265
           D E NT
Sbjct: 502 DKEMNT 507


>gi|251772030|gb|EES52602.1| diguanylate cyclase [Leptospirillum ferrodiazotrophum]
          Length = 348

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 94/199 (47%), Gaps = 19/199 (9%)

Query: 82  LGYISGSILKELFISYNRIS----------QLSRIDCLSGLLNHSAFISSL-------GS 124
           L   S ++  +L  S   I           Q S ID L+G++N   F   +        S
Sbjct: 150 LIETSDALETQLKKSQKEIEILKNELSAAAQASSIDPLTGVINRRGFEMRITECLKAQES 209

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
              + S++F DID FK+IND+ GH VGD+++  ++  L         V R GGEEF    
Sbjct: 210 RQGECSVLFIDIDNFKKINDDHGHSVGDRILLAVAQVLKGKTRGDDIVARFGGEEFVVVL 269

Query: 185 LGSSEQEAAILANDLRKIIENSQ-INISSGPSIH-ITISAGIAERCHKEPISTIIYRADQ 242
             +   +A I+A ++R+ +E    ++     +I  +T+S GI      +     + RADQ
Sbjct: 270 PSTPIDKAHIVAENIRQNVERIALLSAKDNKTIGTVTVSIGIDVHKSGQAWQKTVERADQ 329

Query: 243 ALYVAKKSGRNRVVCFSDI 261
           A+Y +KK G+NR   +  I
Sbjct: 330 AMYQSKKDGKNRTTAYFQI 348


>gi|239908553|ref|YP_002955295.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
 gi|239798420|dbj|BAH77409.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
          Length = 430

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 87/180 (48%), Gaps = 11/180 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDID 137
           I+ + +  L      +   +  D L+G+ N +    +L     +       LS++ FDID
Sbjct: 254 ITFTDITPLAEERRILRIRAATDALTGIANRAGLAEALEREFHRSQRHPASLSVIIFDID 313

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK +ND +GHP GD V+A L+  +          GR GGEEF   A G+   EAA LA 
Sbjct: 314 HFKNVNDAYGHPAGDAVLAELTRLVTTHVRDHDTFGRYGGEEFLIIAPGTDVAEAAKLAE 373

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            LR  +              +T S G+A     +   +++ RAD ALY AK+SGR+RVV 
Sbjct: 374 RLRSDVARHGFPAVG----SLTCSFGVAVAGPDDTPDSLVARADTALYDAKQSGRDRVVA 429


>gi|225848278|ref|YP_002728441.1| signal transduction response regulator [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643341|gb|ACN98391.1| signal transduction response regulator [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 271

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/187 (31%), Positives = 95/187 (50%), Gaps = 18/187 (9%)

Query: 88  SILKELFISYNRISQL----------SRIDCLSGLLNHSAFISSLGSYNEK-------LS 130
           S+ K+L   +  I  L          + ID L+G++N  +F  +LG+  ++        +
Sbjct: 85  SLTKKLENYHKEIQNLNMELKIAKQDATIDFLTGVVNRRSFDRTLGNLLKEVREKDYIFT 144

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  DID FK +ND +GH  GD V+  +S  L +       +GR+GGEEF     G S +
Sbjct: 145 LILLDIDNFKSVNDTYGHLAGDLVLKEISTVLRIFLRANTIIGRIGGEEFGIILPGVSLE 204

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
               +A  +R IIEN ++       I  T S G+ E   ++   +I  R D+ALY+AK++
Sbjct: 205 NGIKVAERIRSIIENREVKFEDRI-IKFTASFGVTESKKEDTKESIYKRVDEALYIAKRN 263

Query: 251 GRNRVVC 257
           G+NRV  
Sbjct: 264 GKNRVAF 270


>gi|190894404|ref|YP_001984697.1| putative two-component response regulator protein [Rhizobium etli
           CIAT 652]
 gi|190700065|gb|ACE94147.1| putative two-component response regulator protein [Rhizobium etli
           CIAT 652]
          Length = 430

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/267 (26%), Positives = 121/267 (45%), Gaps = 33/267 (12%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI--LVENLSLVIISITIS--- 79
           H  ++ F    +I I +V     I +    L  ++ L++   LVE  S+V  ++  S   
Sbjct: 150 HLTIMLFVATSAITIFSVPLAWTIAIACYALCLYFTLQWYNPLVEAGSVVAGTLFFSCGI 209

Query: 80  -----------------LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
                             LL       + EL  +  R+ +L+R D L+G+ N    + +L
Sbjct: 210 IATVVARRTMNILAQKTFLLDCRDQRRVAELADANARLERLARTDPLTGIANRRWMMETL 269

Query: 123 GSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRL 175
            S          ++++  DID+FK +ND  GH  GD+ +  ++  +          V R 
Sbjct: 270 ESLWRHGRETGIVAMLMCDIDHFKALNDKLGHGEGDRCLVKVAGIIQSCVRADRDLVSRH 329

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKE--- 231
           GGEEF        E+EA  +A  +R+ +E + + N SS     +T+S G+A +   +   
Sbjct: 330 GGEEFLIVLPDVEEEEAVAVAKRIRESVEAAALPNPSSSVGPSVTLSVGVAFKSAADTGV 389

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCF 258
            ++ + + AD ALY AK++GRN+V  F
Sbjct: 390 TLANLQHEADVALYRAKEAGRNQVCVF 416


>gi|209885885|ref|YP_002289742.1| ggdef-domain containing protein [Oligotropha carboxidovorans OM5]
 gi|209874081|gb|ACI93877.1| ggdef-domain containing protein [Oligotropha carboxidovorans OM5]
          Length = 405

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 72/167 (43%), Gaps = 9/167 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
             R+  ++  D L+ L N                  +   ++   DID FK +ND  GH 
Sbjct: 217 RRRLEVVASTDYLTSLPNRRMLARAGEKRFRDAKVRHSGFAVAVIDIDNFKTVNDTHGHD 276

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+V+  ++  L         V R GGEEF           A      +R  +E ++  
Sbjct: 277 VGDQVLVTVASLLREHSRKEDMVARSGGEEFTVLLNVEHHTTAVEAIERMRLAVEQARF- 335

Query: 210 ISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++    I +TISAG+A           I  RADQALY AK +GRNRV
Sbjct: 336 VTGAVRIRVTISAGVAAYLPTDNTFEEIFRRADQALYSAKAAGRNRV 382


>gi|157145747|ref|YP_001453066.1| hypothetical protein CKO_01497 [Citrobacter koseri ATCC BAA-895]
 gi|157082952|gb|ABV12630.1| hypothetical protein CKO_01497 [Citrobacter koseri ATCC BAA-895]
          Length = 367

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 111/248 (44%), Gaps = 16/248 (6%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL- 82
           P   ++  S   +++  T   +A +   ++ + P   +      N+   +I    SL+L 
Sbjct: 120 PLCAVLLLSAVIALYFHTPSVLAFLLPLWLTV-PVASVVLNQKVNIHFAVIWGIFSLILL 178

Query: 83  --GYISGSILKELFISYN-------RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLS 130
              ++      E +           R+  L+  D L+G  N  A    L    +     +
Sbjct: 179 GGRFMLIRWFDEAWRQNQHNNLLISRLDNLAHRDPLTGTANRRAMEKLLHNAMAQQNAFA 238

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSE 189
           ++  D+D+FK+ ND +GHP GD  ++ ++D L     +P     R GGEEFA     ++ 
Sbjct: 239 LIMLDVDFFKRYNDAYGHPAGDACLSQVADILAQSVRSPEDVAARYGGEEFAVILFDATL 298

Query: 190 QEAAILANDLRKIIENSQINISSG-PSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           Q+A  +A  ++K +E + I   +   S  +T+S GIA     +     I  AD ALY AK
Sbjct: 299 QDAERVAARIQKALEAAAIPHPASTVSDSVTVSQGIACSEKGKTAEQTIADADAALYRAK 358

Query: 249 KSGRNRVV 256
           ++GRNR  
Sbjct: 359 EAGRNRWA 366


>gi|104779939|ref|YP_606437.1| hypothetical protein PSEEN0696 [Pseudomonas entomophila L48]
 gi|95108926|emb|CAK13622.1| conserved hypothetical protein; putative GGEDF protein; putative
           signal peptide [Pseudomonas entomophila L48]
          Length = 420

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 16/188 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L      ++  +  D L+GL N + F   L           E L+++F D D+FKQIND+
Sbjct: 234 LQSENESLAHQASHDSLTGLPNRAFFEGRLTRSLRNAARQQEHLALLFLDSDHFKQINDS 293

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKIIE 204
            GH VGD+V+  ++ ++         V RLGG+EFA       + ++A  +A  +   + 
Sbjct: 294 LGHAVGDQVLISVASRVRAQLREHDLVARLGGDEFAVLLSPLQAREDAERIAEKIVASM- 352

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF----- 258
              I +  G SI  ++S GIA      +  ++++  AD A+Y AK+  R           
Sbjct: 353 KLPIQLEDGNSITSSLSVGIAYYPDDGQDPASLLNAADAAMYQAKRKRRGHWQVAQPERR 412

Query: 259 -SDIENNT 265
            +D++N +
Sbjct: 413 VTDVKNRS 420


>gi|296102518|ref|YP_003612664.1| hypothetical protein ECL_02167 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295056977|gb|ADF61715.1| hypothetical protein ECL_02167 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 860

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 11/179 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFIS----SLGS---YNEKLSIVFFDIDYFKQINDNFG 147
            +  R+  LSR D L+GL N           L     +N   +++  D+D FK +ND FG
Sbjct: 428 EATKRVEFLSRHDELTGLPNRYHIKEFLTGQLAKEDIHNSPFAMICLDLDKFKPVNDIFG 487

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENS 206
           H  GD ++  ++ +L        FV R GG+EF      +        + + + +  E +
Sbjct: 488 HSTGDALLGEVALRLKQCVRRGDFVARQGGDEFMLLLDNTRHLDHIEEVCHRIVQ--ELN 545

Query: 207 QINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +     G  + I +S GIA         + ++  AD ALY AK+SGRNR V +    + 
Sbjct: 546 RPFTIDGNDVTIGVSMGIALAPQDSTSANDLLRYADIALYQAKQSGRNRWVYYRQDMSE 604


>gi|254427231|ref|ZP_05040938.1| GGDEF domain protein [Alcanivorax sp. DG881]
 gi|196193400|gb|EDX88359.1| GGDEF domain protein [Alcanivorax sp. DG881]
          Length = 409

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 74/256 (28%), Positives = 118/256 (46%), Gaps = 32/256 (12%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG-YISGSILKE 92
           F+S  +++VI I    +F + L+   G        L LV ++     L G Y+   +L++
Sbjct: 149 FYSALVSSVIMI-GCMIFSLQLSS--GRHPFEPSTLVLVSLAFASMSLFGQYVYERLLRQ 205

Query: 93  -------LFISYNRI-------SQLSRIDCLSGLLNHSAFISSLGS-----------YNE 127
                  LF   N +          + +D ++G +N     S L               E
Sbjct: 206 HFLSEHVLFQHRNELHSANLVLENQATVDGMTGCINRRGMESRLSHLYHKLNQNNPDAPE 265

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ-LVVVFGTPMFVGRLGGEEFAAAALG 186
           +++++ FDID+FKQ ND +GHP GD+ +  ++   L +V     FV R GGEEF      
Sbjct: 266 RITLMLFDIDFFKQYNDTYGHPAGDECLKKVAGVPLGMVQSDTDFVARYGGEEFVITLTD 325

Query: 187 SSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCH-KEPISTIIYRADQAL 244
           SS  +A + A  +R  +E   +  S    S  +TIS G+A         + ++  AD+AL
Sbjct: 326 SSFNDALVFAERMRNRVEQLGLPHSGSRVSQVVTISVGVACSDGTAADGAQLLKMADEAL 385

Query: 245 YVAKKSGRNRVVCFSD 260
           Y AK +GRNRV   S+
Sbjct: 386 YQAKGAGRNRVAMMSN 401


>gi|94985714|ref|YP_605078.1| diguanylate cyclase with PAS/PAC sensor [Deinococcus geothermalis
           DSM 11300]
 gi|94555995|gb|ABF45909.1| diguanylate cyclase with PAS/PAC sensor [Deinococcus geothermalis
           DSM 11300]
          Length = 531

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 84/178 (47%), Gaps = 9/178 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYF 139
            + L E+      + + S  D L+GL N     ++L           +  S+V  DID+F
Sbjct: 345 QARLSEIEQLQLALQEQSLRDPLTGLHNRRFLQTALEEAQGRAAASAQPFSLVIVDIDHF 404

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQIND  GH  GD V+  ++  L    GT   + R GGEEF      +  + A   A   
Sbjct: 405 KQINDRVGHGGGDAVLHSVARLLEAHRGTGETLCRYGGEEFVLVLPDTPLEAALTRAEAY 464

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
           R  +E  Q+ +  G ++  T S G+A    H      ++  AD+ALY AK+ GRNRVV
Sbjct: 465 RAALEG-QVVMYGGQALRCTASLGVATFPTHGTAAEVVLTAADEALYTAKRQGRNRVV 521


>gi|262165593|ref|ZP_06033330.1| GGDEF family protein [Vibrio mimicus VM223]
 gi|262025309|gb|EEY43977.1| GGDEF family protein [Vibrio mimicus VM223]
          Length = 978

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 110/228 (48%), Gaps = 22/228 (9%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE-------------LFI 95
           + +   + P++     ++  L ++++++ IS+++  I     +E             L  
Sbjct: 741 YSYSFTIAPYFWQRKEVIFMLGMLVVALCISVVMWRIRTLKRREWYLVEQVALQTQKLRF 800

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
              +  +LS+ D L+GL N  AF   L           +++SI   DID+FKQIND + H
Sbjct: 801 QAEKFERLSKEDELTGLANRRAFDVYLKQAFSRVDHPGQQVSIGLLDIDHFKQINDRYSH 860

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+ I  +S QL+        V R GGEEF    +G   +EA     +LR  IE    
Sbjct: 861 IIGDQAIVAVSQQLLKYVRDKTRVARWGGEEFTILYVG-DPKEAWSYFEELRCTIEQVDF 919

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  + P + +T+S G A+    E   +++  AD AL  AKK GRNRVV
Sbjct: 920 STVA-PGLSVTVSVGFADSQQAESYESVLKLADHALLTAKKLGRNRVV 966


>gi|262043127|ref|ZP_06016265.1| diguanylate cyclase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259039515|gb|EEW40648.1| diguanylate cyclase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 594

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 11/177 (6%)

Query: 93  LFISYNRIS----QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           L ++  R+     + +  D L+GL N      +L S        +  LS +  DID+FK 
Sbjct: 412 LALANQRLRSALLEKALFDSLTGLRNRHHLDEALHSQMALAVHTHTPLSCLMIDIDHFKT 471

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH  GD VI  ++  +           R GGEEF     G  E  A   A+++  
Sbjct: 472 INDRYGHEAGDLVIKSVATIVQRAVRDIGMAFRYGGEEFLVLLPGIDEAGAHQCASEIYT 531

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + N  +         + +S GIA         +++  AD ALY AK+ GR+R+V F
Sbjct: 532 QVRNMTLRDGLTEIGQVDVSIGIASYPQHTQSDSLLRAADAALYRAKELGRSRIVSF 588


>gi|118592942|ref|ZP_01550330.1| hypothetical protein SIAM614_01931 [Stappia aggregata IAM 12614]
 gi|118434476|gb|EAV41129.1| hypothetical protein SIAM614_01931 [Stappia aggregata IAM 12614]
          Length = 944

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 13/194 (6%)

Query: 83  GYISGS-ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFF 134
           G+++ S  + E   + +R++ L+R D L+ L N   F   L            + +I+  
Sbjct: 492 GWVAISEDITERQEARDRLAFLARHDLLTQLPNRIEFRDQLDMLLNQQMVKGGEFAILCL 551

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAA 193
           D+D FK +ND+ GHP+GD+++  ++++L  + G    V RLGG+EFA    L S  ++  
Sbjct: 552 DLDEFKTVNDSLGHPIGDELLRQVAERLRKLIGRKDVVVRLGGDEFAILTGLPSRLKDVE 611

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGR 252
            LA  +  I E SQ    +   I I +S GI            +  +AD ALY AK+ GR
Sbjct: 612 ELAQSV--IWEISQPFQITDHEIVIGVSIGITIARADGTAGDELFKQADLALYRAKEDGR 669

Query: 253 NRVVCFSDIENNTC 266
           N    F + +  T 
Sbjct: 670 NTYRFF-ETDMGTA 682


>gi|83591951|ref|YP_425703.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodospirillum rubrum ATCC 11170]
 gi|83574865|gb|ABC21416.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodospirillum rubrum ATCC 11170]
          Length = 1061

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 11/183 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
            +     + NR+ + +  D L+ L N S   S L     +       + ++F D+D+FK 
Sbjct: 617 DITARKETENRLIRQANFDELTDLPNRSLCYSRLKEAIVEAEATASIVGVLFIDLDHFKN 676

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLR 200
           +ND+ GH VGDK++  ++ +L  V      + R GG+EF       +  EA   +A  + 
Sbjct: 677 VNDSLGHAVGDKLLTAVAQRLREVARPGDTLSRQGGDEFLMLLPDLNGSEAGHGVAQAIL 736

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +         G  I++  S GI          + ++  AD A+Y AK+SGRN +  FS
Sbjct: 737 TALA--PPFSIDGREIYMAASIGITFFPRDGRSAAELLRNADSAMYTAKESGRNAICFFS 794

Query: 260 DIE 262
              
Sbjct: 795 PEM 797


>gi|288959268|ref|YP_003449609.1| two-component response regulator, modulated diguanylate cyclase
           [Azospirillum sp. B510]
 gi|288911576|dbj|BAI73065.1| two-component response regulator, modulated diguanylate cyclase
           [Azospirillum sp. B510]
          Length = 310

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 13/192 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------K 128
           I+  ++   +   +L  L    + +  LS +D L+G+ N   F  +L             
Sbjct: 109 ISPPIVRARVRNHLL--LKRQADLLRSLSFLDGLTGIANRRRFDDALRREWRRCGRSHLP 166

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGS 187
           LS+V  D+D+FK  ND++GH  GD+ +  ++D L          V R GGEEF      +
Sbjct: 167 LSLVILDVDHFKAYNDHYGHQSGDECLRIVADVLSERARRPSDLVARYGGEEFVCLLPET 226

Query: 188 SEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAE--RCHKEPISTIIYRADQAL 244
             + A  LA   R  + + +I  +  P + ++TIS G+A      +     +   ADQ L
Sbjct: 227 DGEGAVRLAEGFRAGVADRRIPHAQSPVAPYVTISLGVATVIPSDEGGPERLAEIADQLL 286

Query: 245 YVAKKSGRNRVV 256
           Y AK++GRNRV 
Sbjct: 287 YRAKRAGRNRVR 298


>gi|323529581|ref|YP_004231733.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Burkholderia sp. CCGE1001]
 gi|323386583|gb|ADX58673.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Burkholderia sp. CCGE1001]
          Length = 692

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/251 (23%), Positives = 110/251 (43%), Gaps = 13/251 (5%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFL-FYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
              I  S    + +A   F          G+   +    +++   +++I+++ +S     
Sbjct: 181 VMAIAISGMHYVAMAAAEFAPGAICGAAAGVNAAWLATSVILFTFAILIVTLLLSRFDAR 240

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDID 137
            S  ++  +     +I +L+ +D L+GL N +     +              +I+F D+D
Sbjct: 241 TSF-LVGAVSKLNGQIVRLATLDTLTGLPNRATLTERIERAIHAARRQRSLFAILFMDLD 299

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA 196
            FK IND+ GH  GD+V+A  + +L++       V RLGG+EF   +   +S  +AA LA
Sbjct: 300 GFKTINDSLGHSAGDQVLAAFAQRLLICVRAGDTVARLGGDEFVVLSENLASRMDAAALA 359

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             + + +       +    + +  S GIA      + + T++  AD A+Y AK++GR+  
Sbjct: 360 EGVLERMRRD--TWADSQPLQVMPSIGIALFPEDGDSVDTLLKHADAAMYEAKRAGRSTY 417

Query: 256 VCFSDIENNTC 266
             F    N   
Sbjct: 418 RFFERRMNEAA 428


>gi|169796659|ref|YP_001714452.1| hypothetical protein ABAYE2642 [Acinetobacter baumannii AYE]
 gi|169149586|emb|CAM87475.1| hypothetical protein; putative GGDEF domain [Acinetobacter
           baumannii AYE]
          Length = 275

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 11/239 (4%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           M+   +  +  +   + + ++   YI L        IL  ++S ++IS   SL L     
Sbjct: 26  MLCVGLLAAFLVFAFLILLDVNCDYIALGRALFGSCILGFSISSMLISRERSLFLNNQLA 85

Query: 88  SILKE-LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139
            I ++ L I  + +  LS+ D L+ + N   F                 L+++F DID+F
Sbjct: 86  EINEQILRIEASELLHLSQQDALTQISNRRTFDEMFDFFYYRANQEKRPLAVLFIDIDFF 145

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND +GH +GDKVI+ ++  +        FV R GGEEF      +  Q A  +A ++
Sbjct: 146 KNYNDFYGHQMGDKVISSIAAAIKNSIRHVDFVARYGGEEFVVLLPETPAQGAYSVAANI 205

Query: 200 RKIIENSQINISSG-PSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRV 255
            K IE   I  ++   S ++TIS G         +    +I+ ADQALY AK+ GRN++
Sbjct: 206 YKAIERQAIPHAASLVSKYVTISLGFTVYTGGLKMGQDRLIHAADQALYRAKQLGRNQI 264


>gi|218532674|ref|YP_002423490.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Methylobacterium chloromethanicum CM4]
 gi|218524977|gb|ACK85562.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Methylobacterium chloromethanicum CM4]
          Length = 795

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 11/183 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           ++   L+    + ++I  L+  D L+GL N ++F   L            KL+++  D+D
Sbjct: 346 VAIRDLQARRQAESQIQFLAHHDALTGLANRTSFSKRLDQEMRAADVGGRKLAVLCLDLD 405

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK++ND FGH  GD ++  ++  +         + RLGG+EFA     +   EA  LA 
Sbjct: 406 RFKEVNDLFGHAAGDAMLESVAHIVSAELDDSQMMARLGGDEFAVLMPCAGPSEAGRLAE 465

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            + + + + ++  + GP   I  S G+A         + ++  AD ALY AK  GR    
Sbjct: 466 RILEALRSGRVE-AGGP--QIATSIGVALYPDDARERAALLSNADTALYRAKSEGRGTYR 522

Query: 257 CFS 259
            F 
Sbjct: 523 FFE 525


>gi|91793928|ref|YP_563579.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91715930|gb|ABE55856.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella denitrificans OS217]
          Length = 1047

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 11/194 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           L  +  + + E   +   I   +  D L+GL N    +  +          N+  +++F 
Sbjct: 585 LNVMLFADVSEKKQAEELIWLQANYDTLTGLPNRRMLLEYIKLQIANCTRDNQGFALLFL 644

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAA 193
           D+D+FK++ND+ GH +GD ++   S ++         V R+GG+EF       +  +   
Sbjct: 645 DLDFFKEVNDSLGHDMGDSLLVEASQRIKACIRDADLVARIGGDEFTIVLTDFTGPKGVE 704

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGR 252
            + N + K +  S+  +      +I+ S GI         I  ++  ADQA+Y AK  GR
Sbjct: 705 RVTNKILKQL--SEPFMLGSEMAYISGSIGITLYPDDALTIDGLLKNADQAMYSAKAHGR 762

Query: 253 NRVVCFSDIENNTC 266
           N+   F+     T 
Sbjct: 763 NKFNYFTPKMQETA 776


>gi|330016082|ref|ZP_08308388.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
 gi|328529679|gb|EGF56576.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
          Length = 594

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 11/177 (6%)

Query: 93  LFISYNRIS----QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           L ++  R+     + +  D L+GL N      +L S        +  LS +  DID+FK 
Sbjct: 412 LALANQRLRSALLEKALFDSLTGLRNRHHLDEALHSQMALAVHTHTPLSCLMIDIDHFKT 471

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH  GD VI  ++  +           R GGEEF     G  E  A   A+++  
Sbjct: 472 INDRYGHEAGDLVIKSVATIVQRAVRDIGMAFRYGGEEFLVLLPGIDEAGAHQCASEIYT 531

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + N  +         + +S GIA         +++  AD ALY AK+ GR+R+V F
Sbjct: 532 QVRNMTLRDGLTEIGQVDVSIGIASYPQHTQSDSLLRAADAALYRAKELGRSRIVSF 588


>gi|253999408|ref|YP_003051471.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. SIP3-4]
 gi|253986087|gb|ACT50944.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. SIP3-4]
          Length = 718

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 13/194 (6%)

Query: 82  LGYISGSI--LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           L Y  G++  + E       I   +  D L+GL N +     L            KL++V
Sbjct: 265 LLYFEGTVEDITERKSYNALIEYQATHDDLTGLPNRTLMQDRLLQAISYADRTASKLAVV 324

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F D+D FK IND+ GH +GD+++  ++ +L         V R GG+EF          +A
Sbjct: 325 FVDLDKFKDINDSMGHFIGDQLLIAMARRLESCIRDSDTVARPGGDEFVLLLSNIHGMDA 384

Query: 193 AILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250
             L+  L++++  +    S  G    +T S GI+          T++  AD A+Y AK+ 
Sbjct: 385 --LSQTLQRVLALTSEPCSIEGKDFTVTSSIGISLYPDDGKTSETLLKNADTAMYKAKQE 442

Query: 251 GRNRVVCFSDIENN 264
           G+N    ++   N+
Sbjct: 443 GKNNFQFYTRELNS 456


>gi|254459429|ref|ZP_05072848.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207083839|gb|EDZ61132.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 304

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 89/182 (48%), Gaps = 9/182 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYF 139
           +  I+ +L      + + S +D L+ + N  A  + L         + +  ++  DID F
Sbjct: 125 ANEIITQLTTQVKTLEEKSNLDSLTKVFNRRALSTYLKNVCSNDKLHYEFHMLILDIDDF 184

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND +GH  GDKV+ F+++ L         V R GGEEF        ++    + N L
Sbjct: 185 KNINDRYGHVAGDKVLIFIANILKKTLRDGDKVFRYGGEEFIIILNRIDDEHCKKITNRL 244

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++  +++ I  G  + +T+S G       +   +++ RAD+ALY AK SG+N+   ++
Sbjct: 245 LDLVRGNKL-IYKGEGLRVTMSIGTTRYAEGDTPDSLVARADKALYKAKNSGKNQ--MYA 301

Query: 260 DI 261
           ++
Sbjct: 302 EM 303


>gi|319426438|gb|ADV54512.1| bifunctional periplasmic substrate binding protein/cytoplasmic
           diguanylate cyclase [Shewanella putrefaciens 200]
          Length = 937

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 95/219 (43%), Gaps = 15/219 (6%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI---LKELFISYNRISQLSRID 107
           F +     + L++I     S VI+SI +  +L  ++  +   +     +  R+  ++  D
Sbjct: 721 FTVSTDNSHYLQWIRYLLFSAVILSIVMIAVLA-VNRRLNLEITRRISAEKRLQHVANHD 779

Query: 108 CLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+ L N +     L              +++F D+D FKQIND  GHP+GD ++  ++ 
Sbjct: 780 VLTQLPNRALLDDRLAQALLSHQRDQAYFALLFIDLDEFKQINDQHGHPIGDSILTQVAQ 839

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            L+        V R GG+EF            A  +A+++ + +  S   +  G ++ + 
Sbjct: 840 ILLSSVRNSDTVARFGGDEFVILLNRVQDLDAATQVADNILQSL--SSPLLIEGQTVRVA 897

Query: 220 ISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+       +    ++ +ADQ +Y AK SG      
Sbjct: 898 VSIGVVLYPRDGDTAIGLLKKADQLMYQAKSSGGRCYRI 936


>gi|161524544|ref|YP_001579556.1| diguanylate cyclase [Burkholderia multivorans ATCC 17616]
 gi|189350700|ref|YP_001946328.1| putative diguanylate cyclase [Burkholderia multivorans ATCC 17616]
 gi|160341973|gb|ABX15059.1| diguanylate cyclase [Burkholderia multivorans ATCC 17616]
 gi|189334722|dbj|BAG43792.1| putative diguanylate cyclase [Burkholderia multivorans ATCC 17616]
          Length = 466

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 98/233 (42%), Gaps = 20/233 (8%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI-----SGSILKE 92
           ++A  IF    FL        YG+   L    S   I     L+         + S L E
Sbjct: 240 WLAHAIFAGGFFLLS------YGVVQALQTTRSFSAIYSQQDLMSRLAESMARTESALLE 293

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L  +  ++  ++  D ++G  N   FI+ +               ++  D+D FK IND 
Sbjct: 294 LRRTNQKLEYMAATDPMTGASNRRQFIAQVEREIGRAERDGTPFCLLALDLDNFKHINDA 353

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH +GD+V   +  Q +        + R+GGEEF A       + A + A  +R  I  
Sbjct: 354 YGHQIGDEVPRGVVRQCLDAIRPSGALARVGGEEFMALLPEMPLEGARMTAERVRSSIAT 413

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +     + +T+S G+A+       +  ++   D+ LY AK+ GRNRVV 
Sbjct: 414 APFGL-DFKRVQVTVSVGVAQYGVDGSTVDALLRVVDERLYQAKREGRNRVVA 465


>gi|116255469|ref|YP_771302.1| GGDEF family regulator [Rhizobium leguminosarum bv. viciae 3841]
 gi|115260117|emb|CAK03218.1| putative GGDEF family regulator [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 298

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 92/206 (44%), Gaps = 13/206 (6%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F+  E +      L I S   SL      G I+++     ++  + S  D L+G+ N   
Sbjct: 99  FWMTEAVQKSGWMLCIASDITSL---RAHGRIVRQ---DRDQAIKASYTDELTGVANRRF 152

Query: 118 FISS------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
            ++          +     +  FDID FK+IND  GH  GD V+   + ++  +      
Sbjct: 153 VMARVDDMLTAARHGNNGCLAVFDIDNFKRINDRLGHHAGDVVLRDFAHRIHQIVRRNDC 212

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
            GR+GGEEF      +  ++A  +   +  +I  S+  +   P    T SAGIA     +
Sbjct: 213 FGRVGGEEFVLVMPATGPEDAVAMVERMLTVIRFSR-PLPESPDFSYTCSAGIAACTPSD 271

Query: 232 PISTIIYRADQALYVAKKSGRNRVVC 257
             S +  RADQALY AK SGR+RV  
Sbjct: 272 SASDLYRRADQALYAAKLSGRDRVRA 297


>gi|71280966|ref|YP_269111.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71146706|gb|AAZ27179.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 415

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 8/165 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            + +L+  D L+G+ N  AF+             +  + ++  D+D+FK IND +GH  G
Sbjct: 241 ELEKLAYTDSLTGVANRCAFLQVSNEELSRSRRLSYDVCVMMLDLDHFKVINDTYGHDAG 300

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DKV+  +S+ +         +GR+GGEEFA  A G  +     LA+ L++ I     +  
Sbjct: 301 DKVLKQVSEAMNNCLRKEDTLGRIGGEEFAIIAPGVDKGGMHKLASRLQQSIALLDFSFL 360

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                +IT+S G  +  + E     + RAD+ LY AK SGRN  +
Sbjct: 361 PENK-NITVSIGYTKVSNDEDFKEALKRADKYLYSAKNSGRNTFI 404


>gi|88797521|ref|ZP_01113110.1| response regulator receiver domain protein (CheY-like) [Reinekea
           sp. MED297]
 gi|88779693|gb|EAR10879.1| response regulator receiver domain protein (CheY-like) [Reinekea
           sp. MED297]
          Length = 560

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 74/214 (34%), Positives = 100/214 (46%), Gaps = 16/214 (7%)

Query: 61  LEYILVENLSLVIISITISLLLG-YISGSILKE----LFISYNRISQLSRIDCLSGLLNH 115
           L +ILV  LSL   S    L+   + +  +LK+    L IS   +  LSR D L+GL N 
Sbjct: 345 LVFILVSVLSLYWNSRLKRLVDRLHQTNRMLKDTKKALSISNGELKTLSRQDPLTGLYNR 404

Query: 116 SAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            A +       S    Y    +++  D+D FK IND  GH +GD V+  ++  L  V   
Sbjct: 405 RAMLPMIEDAVSEYQRYELPSTLMLLDLDDFKLINDQLGHNIGDAVLKSVAYVLQSVSRR 464

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
              + R GGEEF   A G   +EA      +RK I  SQ  I   P   IT SAG+ E  
Sbjct: 465 TDTIARWGGEEFLILAKGIHAEEAFRYLEKVRKQIRESQ-TIDDRP---ITFSAGVCEVQ 520

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
                 T+I  ADQA+Y AK +G++R       E
Sbjct: 521 ANHTADTLIAEADQAMYDAKLNGKDRTCIHRPDE 554


>gi|239835168|ref|ZP_04683495.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239821307|gb|EEQ92877.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 657

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 97/236 (41%), Gaps = 24/236 (10%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK----------ELF 94
           +  + L Y GL        +++  + LVI+ +  + LL    GS+ +          EL 
Sbjct: 162 VRQLHLIYTGLAA-----GLIICGVVLVILLLRHNKLLDRAHGSMQRLTSDLRQATGELQ 216

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147
               R+   +  D L+GL N   F   L           +   I+  D+D FK +ND  G
Sbjct: 217 SQNFRLEHDAHHDALTGLPNRVLFRQDLEKRLEAAHAGGQSAVILLLDLDGFKDVNDTLG 276

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD ++  ++ +L  + G    V RLGG+EFA  + G  E +A  LA+ L + I  S+
Sbjct: 277 HDVGDALLQAVARRLTKLGGRGDMVCRLGGDEFALLSTGLQEDQALELADRLMEAI--SE 334

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                   I I    G+A    +     +   AD ALY AK  G      F     
Sbjct: 335 PYHVGELEIKIGTCVGVAISQGEPDTEELFKHADLALYEAKALGPGHASVFESQMQ 390


>gi|225851410|ref|YP_002731644.1| diguanylate cyclase/phosphodiesterase [Persephonella marina EX-H1]
 gi|225645904|gb|ACO04090.1| diguanylate cyclase/phosphodiesterase [Persephonella marina EX-H1]
          Length = 621

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 89/174 (51%), Gaps = 17/174 (9%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS-----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           + Q +  D L+G+ N +          L  Y     ++  DID+FK+IND +GH +GD+V
Sbjct: 218 LKQRAYTDSLTGVFNRNYLEEITDVIDLKDYI----VMLVDIDHFKRINDTYGHEIGDRV 273

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ--EAAILANDLRKIIENSQINISS 212
           ++  ++ +         + R GGEEF        +Q  ++  +A  L   IEN++ +   
Sbjct: 274 LSKFAELIKQNLRRDDIIIRYGGEEFLVLLKNYRKQKKDSLKVAERLMDTIENTEFS--- 330

Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
              I IT+S GI     K   ++  I +AD ALY AK+ GRNR+  F++ ++++
Sbjct: 331 --GIRITVSIGINMDTDKSRNLTDAIKKADTALYKAKREGRNRIEIFTEAKDDS 382


>gi|218532082|ref|YP_002422898.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium chloromethanicum CM4]
 gi|218524385|gb|ACK84970.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium chloromethanicum CM4]
          Length = 700

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/190 (30%), Positives = 91/190 (47%), Gaps = 12/190 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNE-KLSIVFFDID 137
           +   + E   +  RI  ++R D L+ L N +         +++L +  E  L+++  D+D
Sbjct: 247 TFEDITERRRNEARIIHMARHDGLTDLPNRTHLREVGAEWLAALRTAAEAPLAVLCLDLD 306

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND+FGH VGD ++  ++D+L     +   V RLGG+EFA  +       AA LA 
Sbjct: 307 RFKPVNDSFGHAVGDALLRAVADRLRGHVRSHDVVARLGGDEFAVLSRVEDAAAAAALAE 366

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255
            L + +         G ++ I +SAGIA         I  ++  AD ALY AK  GR  V
Sbjct: 367 RLIETV--GAPYTLDGITVEIGMSAGIALAEGDVPHDIERLLKEADLALYEAKTEGRGTV 424

Query: 256 VCFSDIENNT 265
             F    + T
Sbjct: 425 RLFEPQMDET 434


>gi|330809530|ref|YP_004353992.1| diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377638|gb|AEA68988.1| putative diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 522

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 90/210 (42%), Gaps = 11/210 (5%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
            +   ++L+  + +++    I L       ++ K++  ++  +  ++  D L+GL N   
Sbjct: 306 LFKTSFVLIFLIMILVGFGLIVLSQLRHRMTMEKQIRSAHQTMRDMALTDSLTGLGNRRR 365

Query: 118 FISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTP 169
              +L             L+++  D+DYFK+ ND +GH  GD  +  ++  +   +    
Sbjct: 366 LDIALADEIRLAKRQGSSLALIMLDVDYFKRFNDRYGHAAGDDCLRAIATAVRQTIKRPG 425

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               R GGEEF      +    AA +A  + + +    I     P   +TISAGI     
Sbjct: 426 DLAVRYGGEEFTVLLPNTDSTGAAKVAQQILEAVRAMNIEHGDHPLGIVTISAGITTSQP 485

Query: 230 ---KEPISTIIYRADQALYVAKKSGRNRVV 256
                  + +I  AD  LY+AK +GRNR  
Sbjct: 486 SGEDVTPAMLIKAADAFLYLAKNTGRNRWC 515


>gi|325497696|gb|EGC95555.1| diguanylate cyclase; GGDEF domain; PLP-dependent transferase
           [Escherichia fergusonii ECD227]
          Length = 564

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNH-------SAFIS 120
           L+L+    T  L++ +I    ++  +F+  + +   +  D L+ L N             
Sbjct: 356 LTLLWALFTTMLIISWIVIRKMVSNMFVLQSSLQWQAWHDTLTRLYNRGALFEKARFLAQ 415

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 ECRENQRPFSVIQVDLDHFKSINDRFGHQAGDRVLSHAAGLISRSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIY 238
                 ++  +A  +A  +R  +   +I I+   ++ I+ S G++  E         +  
Sbjct: 476 CIVLPCANLAQAQEIAERIRLRLNEKEILIARSTTLRISASLGVSSTEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD  LY+AK++GRNRV  
Sbjct: 536 LADGRLYLAKQAGRNRVCA 554


>gi|288961767|ref|YP_003452077.1| two-component response regulator, modulated diguanylate cyclase
           [Azospirillum sp. B510]
 gi|288914047|dbj|BAI75533.1| two-component response regulator, modulated diguanylate cyclase
           [Azospirillum sp. B510]
          Length = 498

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 87/183 (47%), Gaps = 14/183 (7%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------------KLSIVF 133
            + + E     + + +L+  D LSG  N    +  L                     ++ 
Sbjct: 313 ATDITERRRMEHELHRLATTDPLSGAHNRRHILDLLDRLLTGQGGGAETRQTVGAACLIM 372

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK+IND+ GH  GD  I    +++         +GR+GGEEFA     +S  + A
Sbjct: 373 LDIDHFKRINDDLGHAAGDVAIRSTVEEIRNHLRATDQIGRIGGEEFAILLPETSGTDGA 432

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGR 252
           ++A  LRK +    I +S G    +T S G+ E R   + + +++ RADQALY AK  GR
Sbjct: 433 VIAERLRKGLAALVIVLSDGRRFQMTGSFGLTEVRPLGDTVESVLGRADQALYRAKALGR 492

Query: 253 NRV 255
           NRV
Sbjct: 493 NRV 495


>gi|260769940|ref|ZP_05878873.1| GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260615278|gb|EEX40464.1| GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|315182064|gb|ADT88977.1| GGDEF family protein [Vibrio furnissii NCTC 11218]
          Length = 319

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 107/220 (48%), Gaps = 21/220 (9%)

Query: 58  FYGLEYILVENLSLVIISITISLLLG------YISGSILKELFISYNRISQL-------- 103
           F  LE +  ENLS+  +   I  L+       + +  +  +L  +   I++L        
Sbjct: 98  FRDLERVENENLSIEEVMTLIRQLVSESRDIRHSTRFLNSQLKNASEEITRLKTQLAEVQ 157

Query: 104 --SRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
             +  D LSGL N  +F   L +     + +SIV  DID+FK  ND+FGH  GD VI  L
Sbjct: 158 KDALFDGLSGLYNRRSFDDDLSAMLHAQQSISIVLLDIDHFKTYNDDFGHLFGDTVIRAL 217

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217
           + ++       +   R GGEEFA      S + A   A+ LR+ IE   + +  +G  + 
Sbjct: 218 AKRIQSSCREGITAYRFGGEEFALLVPNRSLRSARQFADALRRSIEKLSVRDRRTGMQVG 277

Query: 218 -ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            IT S G+AE    + +  +I RAD+ LY AK  GRNRV+
Sbjct: 278 NITASFGVAESEPNDTLDMLIDRADKMLYEAKNLGRNRVM 317


>gi|229520944|ref|ZP_04410366.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae TM
           11079-80]
 gi|229342177|gb|EEO07173.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae TM
           11079-80]
          Length = 684

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+GL N   F   L    +    L +++ DID FK IND+ GH +GDKVI  ++ 
Sbjct: 256 AHIDSLTGLYNRHGFTKRLEQCIQNETPLVMLYLDIDNFKNINDSLGHHIGDKVIKEVAA 315

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHIT 219
           +L  +      +G LGG+EF            A +LA+ +  +I  +Q       S  + 
Sbjct: 316 RLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLI--NQPFDLHHFSKRLA 373

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +           ++  AD A+Y AK+ GRNR++ F+D  N   
Sbjct: 374 CSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEA 421


>gi|221233629|ref|YP_002516065.1| PAS-family GGDEF/EAL protein [Caulobacter crescentus NA1000]
 gi|220962801|gb|ACL94157.1| PAS-family GGDEF/EAL protein [Caulobacter crescentus NA1000]
          Length = 694

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/189 (29%), Positives = 79/189 (41%), Gaps = 19/189 (10%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + +       I  L+  D L+GL N + F               E   ++  D+D+FK 
Sbjct: 255 DITDRRRQTEAIETLAFKDPLTGLPNRTLFQHRFQEAVSASETLGEMFGLIMIDVDHFKD 314

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAILA 196
           IND  GH  GD ++  L+  L   F T   V RLGG+EFA    G   +         L 
Sbjct: 315 INDTLGHDAGDALLKRLAGMLQHAFRTGDTVARLGGDEFAVILRGLHGEADMTRPIEALQ 374

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
           + LR+ I+        G S   + S G A         + +I  AD ALY AK++GRNR 
Sbjct: 375 DLLRRPIQ------HGGRSFTASASIGAALHGDLDADPAHMIKNADIALYRAKEAGRNRS 428

Query: 256 VCFSDIENN 264
           + F     +
Sbjct: 429 IVFEPSMRS 437


>gi|187923576|ref|YP_001895218.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia phytofirmans
           PsJN]
 gi|187714770|gb|ACD15994.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia phytofirmans
           PsJN]
          Length = 444

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 9/180 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDID 137
           +    + E  +S + +++L   D L+G+ + + F             +   LS+V  D D
Sbjct: 244 VVLRDVTERKVSSDNLARLLTTDHLTGVSSRAHFFEIAEAEVARAERHGRALSVVMLDAD 303

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           YFK+IND  GH  GD+V+  ++ +   +  T   V RLGGEEF      ++  EA  +A 
Sbjct: 304 YFKRINDTAGHQAGDEVLKRIAGEAKGLLRTSDTVARLGGEEFILMLPSTTTSEAVAVAE 363

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            LR  +E ++I+ + G ++  T+S G+A        + +++  AD+ALY AK++GRN V 
Sbjct: 364 RLRVAVERARIDTAVG-TLKATVSLGVATVSTANPTLQSLLAAADRALYDAKRAGRNCVR 422


>gi|4378845|gb|AAD19713.1| unknown [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 563

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/182 (34%), Positives = 99/182 (54%), Gaps = 11/182 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFF 134
           L ++      EL  +  ++S+L+  D L+GLLN  A ++ L   ++        +SI   
Sbjct: 383 LQHLVDDRTHELQQANKQLSELANTDVLTGLLNRRALMAKLSELHQDALLNENAISIAML 442

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D+FK+IND +GH VGD V+   +  +        F GR GG+EF   A+ +S + +  
Sbjct: 443 DVDHFKKINDRYGHLVGDDVMRNAASIIRNNIRQEDFAGRYGGDEF-IIAISASIEMSRH 501

Query: 195 LANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +A  +R   E ++I I +G   + IT+S G+ E   +E IS  + +AD  LY AK +GRN
Sbjct: 502 IAERIRN--EFTKIVIKNGETELKITVSIGLFEITTEESISIALDKADSLLYWAKNNGRN 559

Query: 254 RV 255
           RV
Sbjct: 560 RV 561


>gi|73538785|ref|YP_299152.1| GGDEF [Ralstonia eutropha JMP134]
 gi|72122122|gb|AAZ64308.1| GGDEF [Ralstonia eutropha JMP134]
          Length = 413

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 96/203 (47%), Gaps = 18/203 (8%)

Query: 70  SLVIISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAFI-------SS 121
           S   ++  I++LLG    +++  E  I+ N     +R+D L+GLLN  A         + 
Sbjct: 193 SAWALAPLIAVLLGLFGFTVMAMEQIIANNESG--ARVDALTGLLNRGALDMSALSLVAR 250

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                + LS +  DID+FKQ+ND FGH  GD V+  ++  L          GR GGEEF 
Sbjct: 251 WQRDGQSLSCLVIDIDHFKQVNDTFGHHAGDAVLREVAQALDNSRRASDVAGRYGGEEFC 310

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-- 239
                + E +A  LAN + + +    +    G     ++S G+A+         +++R  
Sbjct: 311 ILCPHTDEHQATALANRILRKVRAIPLP---GKECFASVSIGVAQLHGATGSKELLWRTL 367

Query: 240 ---ADQALYVAKKSGRNRVVCFS 259
              AD+ALY AK+ GR+R    S
Sbjct: 368 FADADRALYQAKQQGRDRYEVAS 390


>gi|109899742|ref|YP_662997.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas atlantica T6c]
 gi|109702023|gb|ABG41943.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas atlantica T6c]
          Length = 684

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 11/188 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDID 137
           +    + E   +   I   +  D L+ L N        S  +       EK +++F D+D
Sbjct: 239 VIVRDITEQHKAAQTIRHHAYYDSLTLLPNRFLSLDRLSQMLKEAQRNEEKAALLFLDLD 298

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA 196
            FK++ND+ GH VGDK++   +++L +       VGRLGG+EF       + + +A  +A
Sbjct: 299 DFKKVNDSLGHEVGDKLLVEAANKLTLALRKADTVGRLGGDEFIVLLRALADDNDAKEVA 358

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
            +L ++  +    +  G  + +T+S GI          S ++  AD A+Y +K SGRN  
Sbjct: 359 ENLLRVFRD--PFLIDGKELILTLSIGIVTYPENGSSASDLLRHADAAMYQSKLSGRNTY 416

Query: 256 VCFSDIEN 263
             F+   N
Sbjct: 417 SFFTKEMN 424


>gi|332670800|ref|YP_004453808.1| diguanylate cyclase with PAS/PAC sensor [Cellulomonas fimi ATCC
           484]
 gi|332339838|gb|AEE46421.1| diguanylate cyclase with PAS/PAC sensor [Cellulomonas fimi ATCC
           484]
          Length = 522

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 8/183 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           +    + EL      + + +  D L+GL N  +    L +           LS+V  D+D
Sbjct: 319 VVLRDVTELERLRAELEEQASRDGLTGLHNRRSLAQRLTTAVEQSAGTGAPLSMVLLDLD 378

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK +ND  GH VGD+V+  ++  L    G      RLGGEEF     G    +A   A 
Sbjct: 379 HFKTVNDTHGHAVGDRVLREVAALLAAATGPGEIAARLGGEEFVLLLPGVDVVDATRRAE 438

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            LR       +  +   ++ +T+SAG+A          ++  AD A+Y AK +GR+RV  
Sbjct: 439 RLRTRCARLAVP-AGDVTLTLTLSAGVAAHAAGGTPDDLLRAADDAMYAAKAAGRDRVTA 497

Query: 258 FSD 260
             D
Sbjct: 498 APD 500


>gi|325292439|ref|YP_004278303.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325060292|gb|ADY63983.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 430

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/179 (34%), Positives = 89/179 (49%), Gaps = 11/179 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQIND 144
           E      R+ +L+  D L+GL N  +F          +   +E  ++   DID+FK+IND
Sbjct: 243 ETLKQLKRLRELAERDHLTGLPNRRSFFERTRALMDVINDNDENGAVAILDIDHFKKIND 302

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GH  GD+ +  L++ L            RLGGEEFA    G +   A     +LR  +
Sbjct: 303 TLGHDAGDRALKKLAELLHDMCHEQRHIPARLGGEEFAVFLRGLNAHAAYQFCEELRGAV 362

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           E +   +S G S+ +TIS G+ E    EP    +  ADQ LY+AK +GRNRV  +SDI 
Sbjct: 363 EKNGRQLS-GSSLALTISLGVVEIEKGEPFDNQLNAADQLLYLAKANGRNRV--YSDIM 418


>gi|120608735|ref|YP_968413.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Acidovorax citrulli AAC00-1]
 gi|120587199|gb|ABM30639.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Acidovorax citrulli AAC00-1]
          Length = 1499

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 78/191 (40%), Gaps = 17/191 (8%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
            + + +   +   I +L+  D L+GL N    +  +           +  +++F D+D FK
Sbjct: 1048 TDIGQRKATEREIQRLAFYDSLTGLPNRMLLMDRMRHALATAQRRRQGGALLFIDLDNFK 1107

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA------LGSSEQEAAI 194
             +ND  GH  GD ++  ++ +L     +   V RLGG+EF           G     A  
Sbjct: 1108 TLNDTLGHDQGDVLLQQVAARLNTCVRSVDTVARLGGDEFVVMIEGLSTHPGELAMSART 1167

Query: 195  LANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGR 252
            +   +  ++      +  G     T S G+A         +  ++ +AD A+Y AK +GR
Sbjct: 1168 VGEKILAVLAT--PYVLQGYHYRSTPSIGVAPFGDGRTSTVGELLKQADLAMYQAKTAGR 1225

Query: 253  NRVVCFSDIEN 263
            N +  F     
Sbjct: 1226 NTLRFFDPGMQ 1236


>gi|15640673|ref|NP_230302.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|9655090|gb|AAF93819.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae O1
           biovar El Tor str. N16961]
          Length = 684

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+GL N   F   L    +    L +++ DID FK IND+ GH +GDKVI  ++ 
Sbjct: 256 AHIDSLTGLYNRHGFTKRLEQCIQNETPLVMLYLDIDNFKNINDSLGHHIGDKVIKEVAA 315

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHIT 219
           +L  +      +G LGG+EF            A +LA+ +  +I  +Q       S  + 
Sbjct: 316 RLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLI--NQPFDLHHFSKRLA 373

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +           ++  AD A+Y AK+ GRNR++ F+D  N   
Sbjct: 374 CSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEA 421


>gi|56751585|ref|YP_172286.1| hypothetical protein syc1576_d [Synechococcus elongatus PCC 6301]
 gi|56686544|dbj|BAD79766.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 438

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/198 (27%), Positives = 94/198 (47%), Gaps = 11/198 (5%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------- 123
           +++  +   L +      +LK L ++  R+    RID L+ + N   F            
Sbjct: 236 VLLTQVAEQLSIAIAQSQLLKTLQVTNQRLQDQVRIDGLTQIPNRRRFDEYFNDVWLWGC 295

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAA 182
             +  ++++  D+DYFK  ND +GH  GD+V+  +   L  V       V R GGEEF A
Sbjct: 296 RDHTPVALLLIDVDYFKTYNDFYGHLAGDEVLRKIGLLLNSVVLRATDLVARYGGEEFVA 355

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPIS--TIIYR 239
               ++ + A  +A  L+  ++  QI  +  P    +T+S GIA       ++   +I +
Sbjct: 356 VLPSTTLEGAQAVARRLQADLQRLQIPHNHSPVAAWVTVSIGIAVTIPTIDVALTDLIDQ 415

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD+ALY AK +GRN ++ 
Sbjct: 416 ADKALYEAKSAGRNCIMW 433


>gi|146293765|ref|YP_001184189.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
 gi|145565455|gb|ABP76390.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
          Length = 578

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 26/244 (10%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENL-----SLVIIS---------ITISLL 81
           + F+  +     ++ F+I LT ++ ++  +++ +     ++  I+         IT +L 
Sbjct: 324 TAFVLLIFCGGVLYCFFIWLTSWHFIDKGIIKPVIATRDAMDAIANEKLDTPMPITDNLE 383

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFF 134
           L  +  S+   L     ++  ++  D L+G  N     + +         +   LSIV F
Sbjct: 384 LQQMVNSLAT-LKTYAAQVKAMAETDGLTGCYNRRYLDNQIEKELLYANDHQVPLSIVMF 442

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           DID FKQ ND +GH +GD+ +  + +    +       + R GGEEF         ++A 
Sbjct: 443 DIDNFKQFNDRYGHVIGDQCLKQIVNATKSILQRPTDTLARYGGEEFMILLPSRHLEDAY 502

Query: 194 ILANDLRKIIENSQINISSGPSIHI-TISAGIAERCHKEPIST--IIYRADQALYVAKKS 250
            +A  LR+ I + +I     P   I TISAGI      E + T  +I RAD+ALY AK +
Sbjct: 503 KIAEHLRETIIDLKIPHEDSPHAGIVTISAGITCWHPPERLDTNSLIKRADEALYHAKLT 562

Query: 251 GRNR 254
           GRNR
Sbjct: 563 GRNR 566


>gi|109899678|ref|YP_662933.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
 gi|109701959|gb|ABG41879.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
          Length = 666

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 6/172 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY--NEKLS--IVFFDIDYFKQINDNFGHPVGDK 153
             +   +  D L+ L N  AF  +L     + +LS  + F D+DYFK IND  GH  GD+
Sbjct: 245 ETLFHQASHDPLTELQNRRAFERNLHEIMDDRRLSYFLCFIDLDYFKTINDTCGHAAGDE 304

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  ++  L     +   V RLGG+EF+          A  +AN++++ I     +   G
Sbjct: 305 ILVKVARILKANVRSNDIVARLGGDEFSILIKDCPFDNALQIANNIKENIRGLTYHW-EG 363

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            + H++ S G+A + H    + ++  AD A  +AK +GRN V  + D+ N T
Sbjct: 364 ETFHLSASIGVAPKVHGSTTTELLNSADVACGIAKNAGRNTVHLY-DVSNET 414


>gi|109898989|ref|YP_662244.1| diguanylate cyclase with GAF sensor [Pseudoalteromonas atlantica
           T6c]
 gi|109701270|gb|ABG41190.1| diguanylate cyclase with GAF sensor [Pseudoalteromonas atlantica
           T6c]
          Length = 515

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 11/182 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            I  E   +   I Q +  D L+ L N +     L           ++L++   D+D FK
Sbjct: 324 RIAIEREKADKLIWQQANYDSLTYLPNRNLLYEHLASAMTQANREKKQLAVAMLDLDKFK 383

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            +ND  GH  GD V+   S ++           RLGG+EF        S ++ A L   L
Sbjct: 384 AVNDTLGHAAGDIVLVECSKRIKGCIRKSDIAARLGGDEFIIVLRDAISPEDIAALGRKL 443

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
              +   +       S++ T S GIA   +    + T++  ADQA+Y AK  GRN V  F
Sbjct: 444 SDALA--KPYFIQDESVYCTASIGIAFYPNDAADMDTLLKNADQAMYKAKAKGRNSVHYF 501

Query: 259 SD 260
           ++
Sbjct: 502 AN 503


>gi|313622803|gb|EFR93134.1| ggdef domain-containing protein [Listeria innocua FSL J1-023]
          Length = 357

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 74/254 (29%), Positives = 114/254 (44%), Gaps = 18/254 (7%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           I     K LE ++       + +F    IA    + N+ L  +   P + L      +++
Sbjct: 115 ITALFSKRLEKYN------IWGVFILNIIACGFVVVNLQLI-LAKEPDFWLNMFTFVSIA 167

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYN 126
           LVI +++  L+   I     K+LF  Y    Q S +D L+ L N   F       + + +
Sbjct: 168 LVIGAVSAGLMKNMIKS---KQLFQKY---EQDSTLDYLTRLSNVRQFDEKINHVMDAGS 221

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
            +++++  DIDYFK IND +GH  GD ++  L+  L           R GGEEF+   L 
Sbjct: 222 RQVTLMLIDIDYFKNINDTYGHDAGDAILKQLAIILKRNTSDGSEAFRNGGEEFSIVLLD 281

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALY 245
              ++    A  +RK  E     I SG  + ITIS G++        S  +   AD+ALY
Sbjct: 282 CPIEKGNFFAEQVRKETEEHDFMIPSGKLVKITISVGVSSSKDGANTSEGLFKSADEALY 341

Query: 246 VAKKSGRNRVVCFS 259
            AK +GRNRV    
Sbjct: 342 KAKLTGRNRVCIAD 355


>gi|264676693|ref|YP_003276599.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|299529509|ref|ZP_07042946.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|262207205|gb|ACY31303.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|298722372|gb|EFI63292.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 359

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/259 (25%), Positives = 110/259 (42%), Gaps = 14/259 (5%)

Query: 10  SIWLCHEKNLESFSPHTFMI----YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYIL 65
            I L H   L S       +    Y  +      + +  +  +    I + P       L
Sbjct: 64  WISLMHWSLLPSICILAIGVADRFYTGLKRRWLPSLIALLCGMLFMSIAIRPTPQWAAPL 123

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAF 118
              LSL+ + I  S    + +  +LK L     ++  L RID L+ + +         A 
Sbjct: 124 AVQLSLLPLIILHSAYASWSNSRMLKTLARQNLQLKLLGRIDPLTTVYSRDYWWKKARAA 183

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           +    +  E+  ++  DID FK +ND +GH VGD V+  +   +     +    GR GG+
Sbjct: 184 LHQHRTAKEQTCLLVIDIDRFKSVNDLYGHIVGDDVLKMIGLAIRNSLRSNDIAGRYGGD 243

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTII 237
           EF      ++ +EA  +A  + + I   QI I   P +HI+ S G+A        ++  I
Sbjct: 244 EFTVLCKHTTAKEAYSVAMRICEKIA--QIRIREYPQLHISASIGVAAADEGFGSVTEWI 301

Query: 238 YRADQALYVAKKSGRNRVV 256
             AD ALY AK  GR++V+
Sbjct: 302 KAADSALYSAKSGGRDQVM 320


>gi|226358250|ref|YP_002787989.1| diguanylate cyclase with PAS/PAC and GAF [Deinococcus deserti
           VCD115]
 gi|226319893|gb|ACO47887.1| putative diguanylate cyclase with PAS/PAC and GAF [Deinococcus
           deserti VCD115]
          Length = 960

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 11/183 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           E      ++   +  D L+GL N   F  SL            +L+++F D+D FK +ND
Sbjct: 529 EHHHLTEQLKYQALHDALTGLANRQLFEESLQRALDAAQHVGGELAVLFIDVDNFKSVND 588

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH  GD+V+  ++ +L         V R+ G+EF      +SE +A  +A  + +++ 
Sbjct: 589 SLGHEAGDQVLREIASRLKGCVQHGDTVARISGDEFTVILPFASESDALEVARQITEVLS 648

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDIEN 263
           +    +     I ++ S GI           +++R AD A+Y AK   +     F    N
Sbjct: 649 DPMHVVD--RQIKVSASIGITLTPEGGSDPEMLHRTADLAMYHAKSR-KMSFAVFRSEMN 705

Query: 264 NTC 266
              
Sbjct: 706 RRA 708


>gi|218530951|ref|YP_002421767.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium chloromethanicum CM4]
 gi|218523254|gb|ACK83839.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium chloromethanicum CM4]
          Length = 954

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 92/196 (46%), Gaps = 17/196 (8%)

Query: 83  GYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVF 133
           G+I+    + + + +  RI  ++R D L+GL N   F   L     +         + + 
Sbjct: 501 GWIATYEDVTQRYEAEARIITMARKDALTGLANRMVFGERLEEAAARLDEGAGAGFATLC 560

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-----S 188
            D+D FK++ND  GHP+GD ++  ++++L         V RLGG+EFA    G      +
Sbjct: 561 LDLDRFKEVNDTLGHPIGDGLLRSVAERLQGCLRDTDLVARLGGDEFAIVQAGVQAGTHA 620

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVA 247
            ++A+ LA  L    +  Q  +  G ++ + +S GI+    H      ++  AD ALY A
Sbjct: 621 RRDASALAKRLIAAFQ--QPFLLDGHTVTVGLSIGISLAPEHGTSPEKLLKSADLALYRA 678

Query: 248 KKSGRNRVVCFSDIEN 263
           K +GR     F +  +
Sbjct: 679 KATGRGCWAFFDEEMD 694


>gi|53805012|ref|YP_113338.1| GGDEF domain-containing protein [Methylococcus capsulatus str.
           Bath]
 gi|53758773|gb|AAU93064.1| GGDEF domain protein [Methylococcus capsulatus str. Bath]
          Length = 391

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 89/170 (52%), Gaps = 10/170 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y+R+  L+ +D L+G  N    ++ L          N  L I+ FDIDYFK+IND +GH 
Sbjct: 222 YDRLQTLAALDPLTGAYNRRFGMARLREEFRRAVRLNLPLGILMFDIDYFKRINDTYGHL 281

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V++ ++     V      + R GGEEF A    +S  +   +   LR  +++  + 
Sbjct: 282 AGDRVLSRVAKTARSVLREGDVLIRYGGEEFIAVLPAASLHDLEYVGERLRHQVDDLML- 340

Query: 210 ISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
           +    S+H+T+S G A       E  + ++ RAD+ALY AK  GRNR+V 
Sbjct: 341 MDGDQSMHVTVSIGAAAYPDTDVEDETALVDRADKALYAAKSDGRNRLVI 390


>gi|163853430|ref|YP_001641473.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163665035|gb|ABY32402.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 561

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 19/178 (10%)

Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+R + L+GL N       L             L+++  D+D FK +ND  GHPVGD ++
Sbjct: 123 LARQEPLTGLCNRVGLHDRLDAALTEAARTGAPLAVLMLDLDRFKTVNDTLGHPVGDALL 182

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALG---------SSEQEAAILANDLRKIIENS 206
             ++++L     +   V RLGG+EFA   +               A  LA  L  ++  +
Sbjct: 183 RKVAERLRRATRSGDLVARLGGDEFAILQVDPQVGPHAGVEQPHAAEALARRLVDLVGRT 242

Query: 207 QINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
              +  G  +++ +S G+A      +    ++  AD ALY AK +GR     F    N
Sbjct: 243 --YVVDGHMLNVGVSVGVAIAPADGQNADDLLKHADLALYRAKAAGRGTYRFFEPAMN 298


>gi|134094477|ref|YP_001099552.1| putative signal peptide [Herminiimonas arsenicoxydans]
          Length = 891

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 94/199 (47%), Gaps = 12/199 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           + I ++L +   S  ++L I   ++S  +  D L+GL N   F   L          +++
Sbjct: 435 LIIGVVLVFHDVSDSRKLAI---QLSHQAAHDPLTGLFNRREFERRLELAIDTLARQSKQ 491

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            ++++ D+D FK +ND  GH  GD+++  ++  L  +      + RLGG+EF A     S
Sbjct: 492 HALLYLDLDQFKIVNDTCGHSAGDELLRQITALLQPLVRDSDTLARLGGDEFGAFLENCS 551

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVA 247
            + A  +A  LR+ I +    +       I +S G+     +   +  ++  AD A YVA
Sbjct: 552 PESAIRIAEKLRQTICDFHF-VWQDKIFPIGVSIGLVNFNTNALSLPDLLSAADTACYVA 610

Query: 248 KKSGRNRVVCFSDIENNTC 266
           K +GRNRV  +   ++   
Sbjct: 611 KDAGRNRVHIYRPEDHQLA 629


>gi|326795280|ref|YP_004313100.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
 gi|326546044|gb|ADZ91264.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
          Length = 664

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/190 (30%), Positives = 93/190 (48%), Gaps = 11/190 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136
            +S + + EL  +  R  Q++  D L+ L N  +        +         LSI F D+
Sbjct: 220 LVSATDVSELKAAEARAHQIAYTDALTKLPNRRSLTRIFERVVKQASQKGRLLSIQFLDL 279

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK IND  GH  GDKV+  ++ +L  +      + RLGG+EF        + +A  L+
Sbjct: 280 DEFKAINDTLGHKQGDKVLIEIAHRLRSMVKVDDEIVRLGGDEFLLFIQADEQSDAIRLS 339

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
           +++   + +  I +    +I IT S GIA      + I T++  AD A+Y AK +GRN+ 
Sbjct: 340 DEVLSNL-SHPITLED-ANIKITPSIGIAFYEKEGDTIDTLMQCADIAMYCAKSAGRNQH 397

Query: 256 VCF-SDIENN 264
             F SD+++ 
Sbjct: 398 CVFKSDMKSR 407


>gi|261211476|ref|ZP_05925764.1| sensory box/GGDEF family protein [Vibrio sp. RC341]
 gi|260839431|gb|EEX66057.1| sensory box/GGDEF family protein [Vibrio sp. RC341]
          Length = 579

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 11/180 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L I+   + +LS +D L+ + N   F   L             LSI+  D+DYFK  N
Sbjct: 397 EQLKIANLELERLSFLDSLTHVANRRRFDEQLHTLWHLHVREGNPLSIILCDVDYFKDYN 456

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH +GD+ +  ++     V       V R GGEEF      + +  A ++A+ + + 
Sbjct: 457 DAYGHLMGDETLKQVAMAFTQVANRQSDCVARYGGEEFGILLPNTPQSGAILIADRIHEK 516

Query: 203 IENSQI-NISSGPSIHITISAG-IAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFS 259
           I +  I ++ S  +  +T+S G I    H E I   I+  ADQALY AK +GRN+   + 
Sbjct: 517 IRSLAIPHVHSKVADRLTVSLGVITHIPHPEDIPEQIVSLADQALYQAKANGRNQTSIYE 576


>gi|260768669|ref|ZP_05877603.1| GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260616699|gb|EEX41884.1| GGDEF family protein [Vibrio furnissii CIP 102972]
          Length = 382

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 85/183 (46%), Gaps = 11/183 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIN 143
           ++L  +  ++  LS  D L+ L N    +  L +Y          L  +  D DYFKQ+N
Sbjct: 193 QQLMQANRQLEALSMTDSLTALPNRRKAMRQLEAYWNESQQQGLPLVCIMIDADYFKQVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GD+V+  L+  L   F +   V RLGG+EF      +       +A   R+ +
Sbjct: 253 DSCGHDAGDRVLMALAHTLKHAFRSDDLVCRLGGDEFLVICPNTDLDGGVHIAELTRQQV 312

Query: 204 ENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC--FSD 260
            N  +     P    +IS G+AE          +I  AD A+Y AKK+G+NRV    F +
Sbjct: 313 NNLLVPTGMEPWRG-SISVGVAESHGFMNDHHALIKLADTAVYRAKKAGKNRVCVAQFEE 371

Query: 261 IEN 263
           + +
Sbjct: 372 VMS 374


>gi|255021440|ref|ZP_05293487.1| hypothetical protein ACA_1413 [Acidithiobacillus caldus ATCC 51756]
 gi|254969145|gb|EET26660.1| hypothetical protein ACA_1413 [Acidithiobacillus caldus ATCC 51756]
          Length = 280

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
             L+  D L+GL N   F   L          +   +   D+D FK +ND  GH +GD++
Sbjct: 115 QYLAERDALTGLPNRRQFERDLLREQALVDRGQDCFVAMIDVDGFKFLNDRHGHLLGDRL 174

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++ +L         + R GG+EF A       Q A  +A+ L + IE  ++    G 
Sbjct: 175 LTRVAQRLRESLRRYDGLYRFGGDEFIALLPKLHPQCAVGMADRLCRAIE--RLREDDGS 232

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR-VVCFS 259
            + IT+S G+A          I+  ADQALY AK++GRNR VV +S
Sbjct: 233 GLSITVSVGLAPLQKGGDPQAILKTADQALYQAKETGRNRAVVSYS 278


>gi|254432167|ref|ZP_05045870.1| diguanylate cyclase [Cyanobium sp. PCC 7001]
 gi|197626620|gb|EDY39179.1| diguanylate cyclase [Cyanobium sp. PCC 7001]
          Length = 275

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 8/173 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           L+ +    + +   +  D L+G+ N                 Y    S+   D+D FK+I
Sbjct: 93  LEAMEQRNDALQLSATHDILTGVPNRRLISERCRAEDARTTRYGSTYSLALIDVDNFKRI 152

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND++GH  GD+V+  L+  L           R GGEEF A  + +  + A I+A  +  +
Sbjct: 153 NDSYGHTTGDQVLVELAAVLKSCVREFDLCARWGGEEFLALFVDTGLETAEIIAQRILDM 212

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + + ++  +    + +T+S G+A+    E  +    RADQALY AK SGR+  
Sbjct: 213 VRHLRVK-AGSEELSLTVSIGVAQHAPSELYTNTFARADQALYEAKHSGRDCY 264


>gi|144898295|emb|CAM75159.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 668

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 60/184 (32%), Positives = 88/184 (47%), Gaps = 13/184 (7%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
           +++ + +++L     R+ Q +  D L+GL N + F               + L++V  D+
Sbjct: 487 HMADAKIQDLI---ERLEQTALHDPLTGLANRTKFRQRFEEEVDRQRRSGKTLTLVAMDL 543

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FKQIND FGHP GD V+   +  L         V R GGEEF      +    A  LA
Sbjct: 544 DHFKQINDRFGHPAGDMVLRETAKTLRAQVRQTDLVARFGGEEFLILLPETELIGARHLA 603

Query: 197 NDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRN 253
             LR  +E   + +  SG  +HIT + GIAE     P+    ++  AD+A Y  K  GRN
Sbjct: 604 ESLRLAVEAQDLCLPESGEKLHITGTFGIAESTADAPLSQDALVEAADRAAYRGKNEGRN 663

Query: 254 RVVC 257
           RV  
Sbjct: 664 RVCV 667


>gi|170760605|ref|YP_001785694.1| putative diguanylate cyclase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407594|gb|ACA56005.1| putative diguanylate cyclase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 862

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/214 (28%), Positives = 101/214 (47%), Gaps = 10/214 (4%)

Query: 61  LEYILVENLSLVIISITISLLLGYISG--SILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           LE I +E L     ++  S+ + Y +   + + E      +I  L+  D L+GL N    
Sbjct: 397 LEEIYIEELRKWFSAVVYSMEVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKI 456

Query: 119 ISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           I ++        NE+ +++F D+D+FK IND  GH VGD V+  +S +  ++      +G
Sbjct: 457 IETINKTISNYENERFAVLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKHKIG 516

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           RLGG+EF      +S  +A  LA  +   + N  I       + I  S GI+      + 
Sbjct: 517 RLGGDEFIIVQNITSISDAEKLACKICTTL-NHSIKYKKD-DLFIGASIGISIYPEDGKD 574

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            ST++  AD A+Y AKK+G  +   +S   N   
Sbjct: 575 TSTLMKNADAAMYAAKKNGGYKYEVYSRSMNERA 608


>gi|332140970|ref|YP_004426708.1| putative diguanylate cyclase/phosphodiesterase domain 2 (EAL)
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550992|gb|AEA97710.1| putative diguanylate cyclase/phosphodiesterase domain 2 (EAL)
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 573

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 12/181 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            L E       + +++  D L+ L N      +L          N   ++ F D+D FK+
Sbjct: 132 DLSEQHEIRLELERMASTDLLTDLPNRRVLEQTLISIIEDVTHSNSGFALFFIDLDMFKE 191

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           IND  GH  GD+++  ++ +LV    +    + R GG+EF   A   + E +   +A  L
Sbjct: 192 INDTLGHTWGDELLKAVAKRLVSCIDSANGMLARFGGDEFVYVANNITDEIQCEEIAKKL 251

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
               + S     S  S+HIT S GI+      + I  ++  AD A+Y AK  GRNR   F
Sbjct: 252 TDCFKKS--FELSTESVHITSSIGISIFPRDGDGIDDLLKHADAAMYQAKAEGRNRYHFF 309

Query: 259 S 259
           +
Sbjct: 310 T 310


>gi|254561939|ref|YP_003069034.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens
           DM4]
 gi|254269217|emb|CAX25183.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL), with
           PAS sensor, signal transduction histidine kinase and
           methyl-accepting chemotaxis domains; putative
           membrane-associated protein [Methylobacterium extorquens
           DM4]
          Length = 954

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 92/196 (46%), Gaps = 17/196 (8%)

Query: 83  GYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVF 133
           G+I+    + + + +  RI  ++R D L+GL N   F   L     +         + + 
Sbjct: 501 GWIATYEDVTQRYEAEARIITMARKDALTGLANRMVFGERLEEAAARLDDGAGAGFATLC 560

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-----S 188
            D+D FK++ND  GHP+GD ++  ++++L         V RLGG+EFA    G      +
Sbjct: 561 LDLDRFKEVNDTLGHPIGDGLLRSVAERLQGCLRDTDLVARLGGDEFAIVQAGVQAGTHA 620

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVA 247
            ++A+ LA  L    +  Q  +  G ++ + +S GI+    H      ++  AD ALY A
Sbjct: 621 RRDASALAKRLIAAFQ--QPFLLDGHTVTVGLSIGISLAPEHGTSPEKLLKSADLALYRA 678

Query: 248 KKSGRNRVVCFSDIEN 263
           K +GR     F +  +
Sbjct: 679 KATGRGCWAFFDEEMD 694


>gi|89092064|ref|ZP_01165019.1| diguanylate cyclase (GGDEF domain) [Oceanospirillum sp. MED92]
 gi|89083799|gb|EAR63016.1| diguanylate cyclase (GGDEF domain) [Oceanospirillum sp. MED92]
          Length = 716

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/213 (27%), Positives = 94/213 (44%), Gaps = 18/213 (8%)

Query: 58  FYGLEYILVENLSLVIISITISLLL-------GYISGSILKELFISYNRISQLSRIDCLS 110
           + G+ Y    N  +   ++   L+L         +  S   +L      +++ +  D L+
Sbjct: 506 WVGVRYDKPVNYWMFFWAVVGGLILMGLLIYRNRVISSYNSKLMNLNELLAKQATTDHLT 565

Query: 111 GLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           GL N       +         Y   L+++ FD+D FKQIND FGH  GD V+  +S  L+
Sbjct: 566 GLSNRYLINQEMEKAIASASRYETPLALILFDLDLFKQINDQFGHQAGDAVLQEVSQLLI 625

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   +GR GGEEF      +    A ++AN + +  +  + ++       IT SAG
Sbjct: 626 SESRQADTLGRWGGEEFIMLCPHTDLNGAKLIANKICESTKAKKYSV----DFPITFSAG 681

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                  E    +I R D ALY AK SGR+++V
Sbjct: 682 ATVYIQGESHHELIKRVDDALYQAKNSGRDKIV 714


>gi|114776999|ref|ZP_01452019.1| sensory box/GGDEF family protein [Mariprofundus ferrooxydans PV-1]
 gi|114552520|gb|EAU54980.1| sensory box/GGDEF family protein [Mariprofundus ferrooxydans PV-1]
          Length = 497

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 11/183 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           ++   ++   +  L+  D L+G+ N   F+  L            KL+++F D+D FK I
Sbjct: 313 IRRRKLAEKELEHLAHRDTLTGVSNRYMFLDRLEMAVAHAQRRKAKLAVMFVDLDRFKFI 372

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD V+  ++ ++         + R GG+EF    +  +  E   L    RKI
Sbjct: 373 NDTYGHAAGDAVLRSVATRMSACLREVDLIARYGGDEFTVTLVDVTSTEGIALVA--RKI 430

Query: 203 IENSQINI-SSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           I+  Q  I   G  ++I  S GI+           +I  AD+A+YVAK+   +    F  
Sbjct: 431 IDTLQQPIRVDGTELNIGCSIGISLYPDDSADFEELIRNADEAMYVAKQKPESGFHFFQP 490

Query: 261 IEN 263
            E+
Sbjct: 491 TES 493


>gi|71278350|ref|YP_268068.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71144090|gb|AAZ24563.1| sensory box/GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 428

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 15/205 (7%)

Query: 65  LVENLSLVIISITIS---LLLGYISGSILKELFISYNRISQL---SRIDCLSGLLNHSAF 118
           L ++ S   I +TIS   +       ++++++      + +L   SR D L+ L N   F
Sbjct: 221 LRKDGSEFAIEVTISKIRIADNVEFTAVIRDISEKNQLLEELILSSRRDPLTELYNRRYF 280

Query: 119 ISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L         +    S++  DID+FK IND +GH  GD  +   S  +         
Sbjct: 281 TELLHSEITRSRRFKRGFSLLMLDIDHFKSINDRYGHACGDAALIAFSKAVTNSIREVDT 340

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
           + R GGEEF        +  A ++A  +RK IEN +  I  G  I +T+S G+       
Sbjct: 341 ICRWGGEEFLVLLPEIPKVTAMVVAEKIRKNIENLE-TIYEGDLIKVTVSIGLEYFSGDA 399

Query: 232 -PISTIIYRADQALYVAKKSGRNRV 255
             +S++I + DQ LY AK +GRN++
Sbjct: 400 IEMSSMINKVDQILYRAKDTGRNKI 424


>gi|71909057|ref|YP_286644.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71848678|gb|AAZ48174.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 1094

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 11/184 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           E      ++   +  D L+GL N S F   L              +++F D+D FK++ND
Sbjct: 646 ERNRIEAKLKYQASFDALTGLPNRSLFYIRLRDEMLRAARTGHGGALLFIDLDRFKEVND 705

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
           + GH  GD ++   ++++         V RLGG+EF        + +   +LA  +   +
Sbjct: 706 SLGHESGDSLLVEAAERIRAQVRASDLVARLGGDEFVVVLPDVRAPEHLGLLAQAIVDAL 765

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
                 +  G   +++ S GIA      E    ++  AD+A+YVAK+ GRN    F++  
Sbjct: 766 --VVPFVLDGHQAYVSASVGIACYPQDAEDADILLSCADKAMYVAKELGRNGFCFFTESM 823

Query: 263 NNTC 266
             + 
Sbjct: 824 QTSA 827


>gi|121587851|ref|ZP_01677608.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae 2740-80]
 gi|147673182|ref|YP_001216147.1| PAS/GGDEF domain-containing protein [Vibrio cholerae O395]
 gi|153215852|ref|ZP_01950184.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae 1587]
 gi|153802006|ref|ZP_01956592.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae MZO-3]
 gi|153818697|ref|ZP_01971364.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae NCTC 8457]
 gi|153822535|ref|ZP_01975202.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae B33]
 gi|153826524|ref|ZP_01979191.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae MZO-2]
 gi|153829181|ref|ZP_01981848.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae 623-39]
 gi|227080834|ref|YP_002809385.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           M66-2]
 gi|229505725|ref|ZP_04395235.1| hypothetical protein VCF_000936 [Vibrio cholerae BX 330286]
 gi|229509242|ref|ZP_04398727.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae B33]
 gi|229519550|ref|ZP_04408993.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae RC9]
 gi|229530459|ref|ZP_04419847.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           12129(1)]
 gi|229608836|ref|YP_002879484.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           MJ-1236]
 gi|254226539|ref|ZP_04920122.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae V51]
 gi|254291892|ref|ZP_04962674.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae AM-19226]
 gi|254850887|ref|ZP_05240237.1| PAS domain S-box/GGDEF domain-containing protein [Vibrio cholerae
           MO10]
 gi|255744130|ref|ZP_05418083.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholera CIRS
           101]
 gi|262156106|ref|ZP_06029225.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae INDRE
           91/1]
 gi|262169951|ref|ZP_06037641.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae RC27]
 gi|262191207|ref|ZP_06049406.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae CT
           5369-93]
 gi|297580779|ref|ZP_06942705.1| PAS domain S-box/GGDEF domain-containing protein [Vibrio cholerae
           RC385]
 gi|121547887|gb|EAX57971.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae 2740-80]
 gi|124114569|gb|EAY33389.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae 1587]
 gi|124122465|gb|EAY41208.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae MZO-3]
 gi|125620943|gb|EAZ49294.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae V51]
 gi|126510777|gb|EAZ73371.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae NCTC 8457]
 gi|126519953|gb|EAZ77176.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae B33]
 gi|146315065|gb|ABQ19604.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae O395]
 gi|148875370|gb|EDL73505.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae 623-39]
 gi|149739704|gb|EDM53911.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae MZO-2]
 gi|150422178|gb|EDN14143.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae AM-19226]
 gi|227008722|gb|ACP04934.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           M66-2]
 gi|227012478|gb|ACP08688.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae O395]
 gi|229332232|gb|EEN97720.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           12129(1)]
 gi|229344239|gb|EEO09214.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae RC9]
 gi|229353814|gb|EEO18750.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae B33]
 gi|229357948|gb|EEO22865.1| hypothetical protein VCF_000936 [Vibrio cholerae BX 330286]
 gi|229371491|gb|ACQ61914.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           MJ-1236]
 gi|254846592|gb|EET25006.1| PAS domain S-box/GGDEF domain-containing protein [Vibrio cholerae
           MO10]
 gi|255738070|gb|EET93462.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholera CIRS
           101]
 gi|262021685|gb|EEY40396.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae RC27]
 gi|262030142|gb|EEY48787.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae INDRE
           91/1]
 gi|262032909|gb|EEY51448.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae CT
           5369-93]
 gi|297535195|gb|EFH74030.1| PAS domain S-box/GGDEF domain-containing protein [Vibrio cholerae
           RC385]
          Length = 684

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+GL N   F   L    +    L +++ DID FK IND+ GH +GDKVI  ++ 
Sbjct: 256 AHIDSLTGLYNRHGFTKRLEQCIQNETPLVMLYLDIDNFKNINDSLGHHIGDKVIKEVAA 315

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHIT 219
           +L  +      +G LGG+EF            A +LA+ +  +I  +Q       S  + 
Sbjct: 316 RLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLI--NQPFDLHHFSKRLA 373

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +           ++  AD A+Y AK+ GRNR++ F+D  N   
Sbjct: 374 CSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEA 421


>gi|95930717|ref|ZP_01313450.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Desulfuromonas acetoxidans DSM 684]
 gi|95133197|gb|EAT14863.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Desulfuromonas acetoxidans DSM 684]
          Length = 888

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 98/197 (49%), Gaps = 16/197 (8%)

Query: 77  TISLLLGYISGSILKE-----LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------ 125
            ++++   +S  I +E     L  + + +  L   D L+ L N   F   L         
Sbjct: 428 VLAIMAARVSAEIEREISEQRLRDNEDHLEYLVYHDVLTDLPNRQLFRDRLQHAISMASL 487

Query: 126 -NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
              ++ ++F D+D+FK+IND+ GH VGD+++  ++ +L +  G    V RL G+EFA   
Sbjct: 488 GQHQVGVLFIDLDHFKKINDSLGHEVGDRLLCEVARRLRLCIGGLDTVARLSGDEFAIIL 547

Query: 185 LG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQ 242
              ++ +   ++A ++ + +   ++ +  G  + +T S GI+      + + +++  AD 
Sbjct: 548 DQLNNIENVILIAQEVNRRLA--EMMVVEGYKLFLTASIGISLYPGDGKDVVSLLKCADA 605

Query: 243 ALYVAKKSGRNRVVCFS 259
           A++ AK+ GR+    ++
Sbjct: 606 AMFKAKELGRDNYRFYT 622


>gi|134293314|ref|YP_001117050.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           vietnamiensis G4]
 gi|134136471|gb|ABO57585.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           vietnamiensis G4]
          Length = 749

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 13/177 (7%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQIND 144
             +  ++  L+  D L+GL N       +              +++++F D+D FK++ND
Sbjct: 313 REAQQQLRYLATRDALTGLYNRRWLSERMRELFGKRDPVAGPARVAVLFIDLDGFKKVND 372

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD ++  ++ +LVV       + R+GG+EF        + +A  LA   R++I+
Sbjct: 373 TAGHDAGDALLRSVAARLVVCGSGRHALTRVGGDEFVILVEDCDDPDA--LAALAREVID 430

Query: 205 N-SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++    +     + +S GI+      +  +T++  AD A+Y AK+ GRN    F+
Sbjct: 431 AIAKPFEIANNEYWLGVSIGISVAPRDGDDAATLMRNADSAMYDAKQRGRNHFTFFT 487


>gi|320353529|ref|YP_004194868.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Desulfobulbus propionicus DSM 2032]
 gi|320122031|gb|ADW17577.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfobulbus propionicus DSM 2032]
          Length = 996

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 11/180 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E+     +I   +  D L+GL N       +            KL+++F D+D FK 
Sbjct: 540 DITEMKRQEEQIIHQAYHDMLTGLPNRLLANDRIEVSIAHARRSGSKLAVLFLDLDNFKN 599

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLR 200
            ND+ GH  GDK++  ++++LV        V RLGG+EF       + +E  I LA  L 
Sbjct: 600 TNDSLGHEWGDKLLLGVANRLVSQVREEDTVARLGGDEFLILVAALASEEVVIDLAKRLL 659

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTII-YRADQALYVAKKSGRNRVVCFS 259
           + +  +  NI     + +T+S G+A        + I+   AD A+Y AK  G+NR   F+
Sbjct: 660 RSLA-APFNIDD-TELFVTVSIGVAFFPEDGSSAGILTKHADIAMYEAKARGKNRYCLFT 717


>gi|264680145|ref|YP_003280054.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           CNB-2]
 gi|262210660|gb|ACY34758.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           CNB-2]
          Length = 462

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 77/185 (41%), Gaps = 11/185 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDY 138
           +   +  +      + + +  D L+GLLN  A  + L               ++  DID 
Sbjct: 249 ASKDISRMVQREMELRERANRDKLTGLLNRHAGETELKRNQLQAQNQLRPYGVILGDIDL 308

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND FGH  GD+V+  ++  L           R GGEEF      +S   AA LA  
Sbjct: 309 FKQVNDRFGHVAGDRVLKMVAHVLSGKVRRYDRAVRWGGEEFLIVLSDASLGVAAGLAER 368

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +R  +       +       TIS G+      E    ++ RAD ALY AK  GRN+V   
Sbjct: 369 IRCAVA----ECADPEVGRFTISLGVGLWEPGETEDDLLKRADAALYRAKHRGRNQVAIA 424

Query: 259 SDIEN 263
           +   N
Sbjct: 425 TGSMN 429


>gi|71909479|ref|YP_287066.1| diguanylate cyclase [Dechloromonas aromatica RCB]
 gi|71849100|gb|AAZ48596.1| diguanylate cyclase [Dechloromonas aromatica RCB]
          Length = 517

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/180 (32%), Positives = 87/180 (48%), Gaps = 8/180 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
            I+ S L +L    +  S L+R D L+  LN      +L          +  LSI   D+
Sbjct: 337 LITESELMQLHQELDNASALARHDPLTDALNRKGLDEALAREVSSMRRKDLPLSISLLDV 396

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK++ND  GH  GD  +  L+D           + R GGEEF      ++ ++     
Sbjct: 397 DNFKKLNDRLGHDAGDGALIHLADVTRSNMRPSDTLARYGGEEFVVLMPDTTLEQGIEAM 456

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             L++ +    I +S    I IT SAG+A+    E  +  I RADQA+Y+AK+SG+NRV+
Sbjct: 457 TRLQREL-TKAIYLSGNEKILITFSAGVAQLAPDETGTDAIRRADQAMYLAKRSGKNRVM 515


>gi|148549736|ref|YP_001269838.1| diguanylate cyclase [Pseudomonas putida F1]
 gi|148513794|gb|ABQ80654.1| diguanylate cyclase [Pseudomonas putida F1]
          Length = 423

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 10/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDN 145
           L      ++  +  D L+GL N + F   L           + L+++F D D+FKQIND 
Sbjct: 237 LQSENQTLAHQASHDSLTGLPNRAFFEGRLSRSVRNAASQQDHLALLFLDSDHFKQINDT 296

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKIIE 204
            GH VGD+V+  +++++         V RLGG+EFA       + ++A  +A  +   + 
Sbjct: 297 LGHAVGDEVLISVAERVRAQLREHDLVARLGGDEFAVLLTPLHTRKDAEHIAEKIVASM- 355

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
              + + SG SI  ++S GIA         ++++  AD A+Y AK+  R     
Sbjct: 356 KLPVQLDSGRSISTSLSVGIAYYPDDGADPASLLNAADAAMYQAKRERRGHWQL 409


>gi|325272942|ref|ZP_08139264.1| diguanylate cyclase [Pseudomonas sp. TJI-51]
 gi|324101931|gb|EGB99455.1| diguanylate cyclase [Pseudomonas sp. TJI-51]
          Length = 496

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 10/170 (5%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNF 146
             +   ++ L+  D L+GL N                  +  L+++  D+D+FK  N   
Sbjct: 324 HEAEQGLATLAATDSLTGLANRRRLDQVLRQEWARAQRNHMPLALLMVDVDHFKAFNQRH 383

Query: 147 GHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           GH  GD  +  ++  +      P     R GGEEF      +    A ++A  +R  +E 
Sbjct: 384 GHAGGDHALREVAKAIEACLRRPADLAARYGGEEFQVVLPETDLAGAQLMAERIRLSVEG 443

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                       +T+S GI     +  ++ ++  AD+ALY AK  GRNRV
Sbjct: 444 LAPFADDAR--GVTVSIGIGLSGTQYDLARLLGAADEALYRAKAKGRNRV 491


>gi|300113840|ref|YP_003760415.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
 gi|299539777|gb|ADJ28094.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
          Length = 1500

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 85/181 (46%), Gaps = 12/181 (6%)

Query: 95   ISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFG 147
             +   I QL+  D L+ L N + F   LG          EK +++F D+D FK +ND  G
Sbjct: 1046 RAEKDIHQLAYHDVLTNLPNRTLFHKQLGGVINRSHLRGEKFAVLFLDLDRFKLVNDTLG 1105

Query: 148  HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENS 206
            H VGD ++   +D++V    +   V RLGG+EF        S + AA +A  +  ++  S
Sbjct: 1106 HEVGDLLLKAAADRIVGCLRSKDMVARLGGDEFTVILEQIESPRIAAEVAAKICSVL--S 1163

Query: 207  QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            +  + SG  ++I  S GI+      E  S +I  AD A++ AK+ G N    +       
Sbjct: 1164 KPFVFSGQEMYIGTSIGISLYPDDGEDASMLIKHADTAMFRAKEQG-NSYQFYERGMETA 1222

Query: 266  C 266
             
Sbjct: 1223 A 1223


>gi|288957352|ref|YP_003447693.1| diguanylate cyclase [Azospirillum sp. B510]
 gi|288909660|dbj|BAI71149.1| diguanylate cyclase [Azospirillum sp. B510]
          Length = 595

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 8/168 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVG 151
             R+ +LS  D L+GL N   F   L            ++++ D+D FK +ND  GH  G
Sbjct: 411 QERLRRLSERDGLTGLFNRRTFFERLDESISRPDSGPSALLYVDLDNFKAVNDLHGHQQG 470

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  +   L          GRLGG+EF      + E +A I+A  L   +     ++S
Sbjct: 471 DAVLKAIGTLLSTGVRPGDLPGRLGGDEFVLWLGRTDEAKARIVAERLLTGMRELA-HLS 529

Query: 212 SGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
           +GP   + +S GIA       E +  +  RAD A+Y AKKSG+     
Sbjct: 530 AGPEKPLGLSIGIAVHSPGRGETVRELTERADAAMYHAKKSGKGHYAL 577


>gi|256829884|ref|YP_003158612.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
 gi|256579060|gb|ACU90196.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
          Length = 290

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 12/167 (7%)

Query: 101 SQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            QL+  D L+GL N ++F             ++  L+++F DID FK IND++GH +GD 
Sbjct: 122 QQLALQDVLTGLPNRASFEQGLAHGLIQAKRHDWGLAVLFIDIDKFKNINDSYGHDMGDH 181

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISS 212
           V+  L+++L         V R GG+EF    L   ++ +   +A  L   I   +    +
Sbjct: 182 VLRTLANRLKSFVRGADMVSRWGGDEFVCLLLEVKQESDVTRIAEQLVTRIA--EPCEFN 239

Query: 213 GPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           G  + IT S GIA      + +  +   AD A+Y AK S +NRVV F
Sbjct: 240 GTVLSITSSIGIAMYPEDGKTVDILFKNADMAMYEAKGS-KNRVVLF 285


>gi|172037208|ref|YP_001803709.1| regulatory components of sensory transduction system [Cyanothece
           sp. ATCC 51142]
 gi|171698662|gb|ACB51643.1| probable regulatory components of sensory transduction system
           [Cyanothece sp. ATCC 51142]
          Length = 484

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 11/180 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
           + + L  +  ++S L+ +D L+ + N   F          L    + LS++  D+D+FK 
Sbjct: 299 LEQSLKKANKKLSYLAVVDDLTEIANRRRFDDFLNKEWRRLLRTQDPLSLILLDVDFFKC 358

Query: 142 INDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND +GHP GD  +  ++      V      V R GGEEFA     + ++ A I+A  + 
Sbjct: 359 YNDYYGHPKGDDCLVKIAQLANNSVSRCSDLVARYGGEEFAVILPNTDKRGAIIVAQRIH 418

Query: 201 KIIENSQINISSGPSIH-ITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
           + I N++I   +      I++S G+A      +E    +I  ADQALY AK  GR+R   
Sbjct: 419 QNIRNARIPHETSKKGSIISVSLGVACLIPSLQESPKNLINLADQALYQAKNQGRDRFCV 478


>gi|157369436|ref|YP_001477425.1| diguanylate cyclase [Serratia proteamaculans 568]
 gi|157321200|gb|ABV40297.1| diguanylate cyclase [Serratia proteamaculans 568]
          Length = 353

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 109/229 (47%), Gaps = 12/229 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            F   +A  +  A      +G  PF      L   L L +I     +LLG ++    K L
Sbjct: 121 LFFKGLAVQVLSALAISALLGF-PFQPQSTPLQIYLCLPMIYF-YPILLGLVTYRTAKRL 178

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNF 146
                 + ++S  D L+GL N   +   L         Y    +++  DID+FK IND F
Sbjct: 179 AEKKQELLRISMRDGLTGLYNRRHWEHLLHHQFDSCRRYQHSATLILMDIDHFKTINDTF 238

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH +GD+ +A L+++L++       VGR GG+EF A    +S ++A+I    +++ +  +
Sbjct: 239 GHALGDEALAVLAEELLIGLRAVDIVGRYGGDEFGAVLPNTSAEQASIALLRIQERL--N 296

Query: 207 QINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
           +I     P + + ISAGIA+           +  AD ALY AK +GRNR
Sbjct: 297 EIVFREAPQLRLNISAGIADYHGDMSGYLDWLKAADNALYRAKNNGRNR 345


>gi|284046377|ref|YP_003396717.1| diguanylate cyclase [Conexibacter woesei DSM 14684]
 gi|283950598|gb|ADB53342.1| diguanylate cyclase [Conexibacter woesei DSM 14684]
          Length = 530

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 85/176 (48%), Gaps = 15/176 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+ L ++ +R    +  D L+GL N  A   +L             L++V  D+D+FKQ+
Sbjct: 345 LRTLALAQSR----AMTDALTGLPNRWALQDALKRMLAQAARSERPLALVLLDLDHFKQL 400

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  +A + D L+          R GGEEFA     +S + A  +A  LR  
Sbjct: 401 NDTYGHDAGDTALAAVGDALLTGLRESDMAARSGGEEFAVLLPDTSLEGAVAVAEQLRAA 460

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I    + +   P   +T S G+A    H      ++  AD+ALY AK++GRNRV  
Sbjct: 461 IAAVDLPL---PGASLTASFGVAVLPLHAVDADGLMRVADRALYAAKRAGRNRVEV 513


>gi|226939478|ref|YP_002794551.1| hypothetical protein LHK_00549 [Laribacter hongkongensis HLHK9]
 gi|226714404|gb|ACO73542.1| GGDEF domain protein [Laribacter hongkongensis HLHK9]
          Length = 601

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 85/181 (46%), Gaps = 12/181 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
           +  EL  +  +I +    D L+G LN                   + L++   DID FKQ
Sbjct: 426 LEAELVEASTKIKE----DQLTGALNRRGLDEQFMREASRAERSGQPLALALIDIDNFKQ 481

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH  GD  + ++ D +         V R GGEEF      +S+++A  L   L++
Sbjct: 482 LNDRYGHRTGDNALRYVVDLVSERVRPSDAVARFGGEEFVVLMPDTSQEQALELIERLQR 541

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            +      +++   + IT SAGIA     E    +I RAD A+Y AK +G+NRV+  +D 
Sbjct: 542 DL-TKTFFLANEDRLVITFSAGIAVWSAGESELDLIERADHAMYRAKLAGKNRVLAATDE 600

Query: 262 E 262
            
Sbjct: 601 M 601


>gi|221069185|ref|ZP_03545290.1| diguanylate cyclase [Comamonas testosteroni KF-1]
 gi|220714208|gb|EED69576.1| diguanylate cyclase [Comamonas testosteroni KF-1]
          Length = 377

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 111/259 (42%), Gaps = 14/259 (5%)

Query: 10  SIWLCHEKNLESFSPHTFMI----YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYIL 65
            I L H   L         +    Y  +      + +  +  +F   + +TP    +  L
Sbjct: 82  WIALMHWSLLPGICILAIGVADRFYTGLKRRWLPSLIALLCGMFFMSLAITPSPQWDAPL 141

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAF 118
              LSL+ + +  S    + +  +LK L     ++  L RID L+ + +         A 
Sbjct: 142 AVQLSLLPLIVMHSAYASWSNSRMLKTLARQNLQLKLLGRIDPLTTVYSRDYWWKKARAA 201

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           +    S  E+  ++  DID FK +ND +GH VGD V+  +   +     +    GR GG+
Sbjct: 202 LHQHRSVKEQTCLLVIDIDRFKSVNDLYGHIVGDDVLKLIGLAIRNSLRSNDIAGRYGGD 261

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTII 237
           EF      ++ +EA  +A  + + I   QI +   P + I+ S G+A        ++  I
Sbjct: 262 EFTVLCKHTTAREAYSVAMRICEKIA--QIRVRDYPQLQISASIGVAAADDSFGSVTEWI 319

Query: 238 YRADQALYVAKKSGRNRVV 256
             AD ALY AK  GR++V+
Sbjct: 320 KAADSALYSAKSGGRDQVM 338


>gi|109899932|ref|YP_663187.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109702213|gb|ABG42133.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
          Length = 628

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 92/206 (44%), Gaps = 9/206 (4%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           + L      N+ L    + I L++  +   ++  +      +++L+  D L+GL N    
Sbjct: 416 FALSAQEQRNIYL-WAFLGIVLVVCCLLAVMVYRVKAQSRALTKLAITDDLTGLYNRRHI 474

Query: 119 ISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           I  L         Y   L +   D+D+FK+IND++GH VGD+V+   SD           
Sbjct: 475 IEQLERQVHAANRYKYDLCVAIIDLDFFKKINDSYGHAVGDRVLIEFSDICSKNLRQSDI 534

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
           +GR+GGEEF      ++ Q+     + LR  I     N+     + I+ S G+       
Sbjct: 535 IGRIGGEEFLVILPHTNLQDGYNALDGLRHKISMVN-NVVDIKDLSISASIGLTFNTDSR 593

Query: 232 PISTIIYRADQALYVAKKSGRNRVVC 257
               ++  AD ALY AK  GR++VV 
Sbjct: 594 ESMQLMADADTALYQAKTQGRDQVVI 619


>gi|221065958|ref|ZP_03542063.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           KF-1]
 gi|220710981|gb|EED66349.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           KF-1]
          Length = 442

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/183 (33%), Positives = 90/183 (49%), Gaps = 11/183 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDY 138
           S    +EL      +  L+  D L+GL+N   F  +L S   +       LS++  D+D+
Sbjct: 257 SRRQQEELRQLTLHLESLAVKDALTGLVNRRRFDEALESEWRRAHRSETALSLLLLDVDH 316

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           FKQ+ND+FGHP GD+V+   +  L          V R GGEEFA    G+    AA LA 
Sbjct: 317 FKQLNDSFGHPFGDEVLKCFAGLLAHCVQRAGSLVSRYGGEEFAILLPGTGLSGAARLAE 376

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNR 254
            +R+ +E   +       + IT+S G+A           S++I  AD+ALY AK+ GRN 
Sbjct: 377 FIRQQVEALSLGNQQTGLVQITVSVGVACASGPALDSSCSSLIDMADRALYEAKRKGRNS 436

Query: 255 VVC 257
           V  
Sbjct: 437 VCL 439


>gi|81300905|ref|YP_401113.1| diguanylate cyclase with GAF sensor [Synechococcus elongatus PCC
           7942]
 gi|81169786|gb|ABB58126.1| diguanylate cyclase with GAF sensor [Synechococcus elongatus PCC
           7942]
          Length = 664

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 79/192 (41%), Gaps = 21/192 (10%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           +      +  +L  +  ++ +L++ D L+GL N   F   L             L ++  
Sbjct: 469 IAIQQARLYAQLAAANQQLLRLAQSDGLTGLANRRHFDQCLDIEWQRAIREQHPLGLILI 528

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAA 193
           DID FKQ ND +GH  GD  +  ++  L  V       V R GGEEF      ++EQ   
Sbjct: 529 DIDCFKQFNDTYGHQAGDDCLKAVATALTQVIARPADLVARYGGEEFVVILPNTNEQGIL 588

Query: 194 ILANDLRKIIENSQINISSGPSIH--------ITISAGIAERCHKEPISTIIYRADQALY 245
            +A  +R  ++  +I   S             +T           +    +I  ADQALY
Sbjct: 589 QIAESMRSAVQQLKIPHRSSSVCSSVSLSLGAVT-----WVPTPHKSPEALIAAADQALY 643

Query: 246 VAKKSGRNRVVC 257
            AK+ GRNRV  
Sbjct: 644 QAKELGRNRVCL 655


>gi|229136232|ref|ZP_04264981.1| GGDEF domain protein [Bacillus cereus BDRD-ST196]
 gi|228647212|gb|EEL03298.1| GGDEF domain protein [Bacillus cereus BDRD-ST196]
          Length = 343

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 113/237 (47%), Gaps = 18/237 (7%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI--- 85
           + + +  SIF   + F  N++   I + P     YIL +++ +V + +   ++  Y+   
Sbjct: 111 LIWRMKISIFTKWIWF--NVYSLSILILPL----YILFKDIYVVALYLVCCIVAAYVTFV 164

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           S S + +    +  +   + ID L+ L N   F   +  +       N+ L ++  DID+
Sbjct: 165 SASYVLQSNELFQTMKHYATIDALTNLGNVRKFDFEMNRHIGSKHMKNDSLCLLLIDIDH 224

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND +GHP GD+V+  L   L+     P  V R GGEEFA             +   
Sbjct: 225 FKYVNDTYGHPAGDEVLKQLGRILLENAPFPNLVFRKGGEEFALLLPKKRVAFGTRIGEQ 284

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +R  +E     + +G  I IT+S G++E   K+     I  AD ALY +K++GRN+V
Sbjct: 285 IRLAVEKHSFQLQNGEKIKITVSVGLSEY--KKSPEQFIQSADDALYYSKRNGRNKV 339


>gi|88705789|ref|ZP_01103498.1| GGDEF/EAL/PAS domain containing protein [Congregibacter litoralis
           KT71]
 gi|88699860|gb|EAQ96970.1| GGDEF/EAL/PAS domain containing protein [Congregibacter litoralis
           KT71]
          Length = 968

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 13/190 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYF 139
              + +L     ++ Q +  D L+GL N + F   L            +L++V+ D+D F
Sbjct: 481 SRDITDLHDHEQQLEQAAHYDALTGLPNRTLFFDRLDQAMASADRRLVELAVVYMDLDKF 540

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K+IND  GH  GD+++  LS            V RLGG+EF       +S +E   L + 
Sbjct: 541 KEINDEHGHATGDQLLKQLSRVFSSQIRRSDTVARLGGDEFVFLICDFNSRKECIALLDR 600

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVV 256
           L   I   +  + +G S+ ++ SAGIA       +   +++ +ADQA+Y AK  GRN   
Sbjct: 601 LMSTI--HEPRVVAGISMQVSASAGIAFYSSAMDVGPDSLLRQADQAMYRAKAGGRNLYR 658

Query: 257 CFSDIENNTC 266
             ++ E ++ 
Sbjct: 659 IANE-EADSA 667


>gi|332296092|ref|YP_004438015.1| diguanylate cyclase [Thermodesulfobium narugense DSM 14796]
 gi|332179195|gb|AEE14884.1| diguanylate cyclase [Thermodesulfobium narugense DSM 14796]
          Length = 337

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 11/165 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  LS  D L+G+ N   F       IS    Y ++LS +FFDID FK +ND FGH +GD
Sbjct: 176 LRNLSEKDPLTGIYNRRKFQEICEHSISESDRYKKELSFIFFDIDNFKMVNDTFGHNIGD 235

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  +++ +        +  R GGEEF      ++   A  +A  +RK IE  +     
Sbjct: 236 VVLKEIANIVKREIRKSDYFARWGGEEFILILPETNINSALTVAEKIRKSIEVYEFPAVG 295

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                +T+S G+A R   E  S +  R D A+Y AK  G+N VV 
Sbjct: 296 ----RVTVSIGVASRKFSEDYSDLFKRLDDAVYRAKSLGKNTVVA 336


>gi|261212236|ref|ZP_05926522.1| hypothetical protein VCJ_002510 [Vibrio sp. RC341]
 gi|260838844|gb|EEX65495.1| hypothetical protein VCJ_002510 [Vibrio sp. RC341]
          Length = 684

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGS--YNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + +D L+GL N   F   L    +NE  L +++ DID FK IND+ GH +GDKVI  ++ 
Sbjct: 256 AHMDSLTGLYNRHGFTKRLEQLIHNETPLVMLYLDIDNFKNINDSLGHHIGDKVIKEVAA 315

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHIT 219
           +L  +      +G LGG+EF            A +LA+ +  +I  +Q       S  + 
Sbjct: 316 RLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLI--NQPFDLHHFSKRLA 373

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +           ++  AD A+Y AK+ GRNR++ F+D  N   
Sbjct: 374 CSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEA 421


>gi|238755796|ref|ZP_04617127.1| hypothetical protein yruck0001_12120 [Yersinia ruckeri ATCC 29473]
 gi|238705954|gb|EEP98340.1| hypothetical protein yruck0001_12120 [Yersinia ruckeri ATCC 29473]
          Length = 569

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 13/173 (7%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           +  R+   +R D L+ L N   F                 L+++  DIDYFK  ND++GH
Sbjct: 390 ANRRLEIQARTDSLTKLPNRREFKKVLTHEFLRAKRTETPLALLMIDIDYFKNFNDHYGH 449

Query: 149 PVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
             GD  +  ++  L          V R GGEEFAA    + +  AA++A  + + I    
Sbjct: 450 ISGDACLRLVARALRKSLKRGTDIVARYGGEEFAAILPDTDQAGAALVAKHILESIRLMG 509

Query: 208 INISSGPSIHITISAGIAERC---HKEPIST--IIYRADQALYVAKKSGRNRV 255
           I         +TIS G++      H   I    ++  AD+ALY +K +GRN+ 
Sbjct: 510 IKHIDSQFQKVTISIGVSFYHPRIHSTGIEQSHLLLAADKALYFSKNNGRNQY 562


>gi|39934859|ref|NP_947135.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009]
 gi|39648709|emb|CAE27231.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris
           CGA009]
          Length = 272

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/194 (32%), Positives = 104/194 (53%), Gaps = 14/194 (7%)

Query: 70  SLVI---ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY- 125
           SLV+   +S T+S  + Y S  ++++L  +   + ++SR D L+GLLN   F  +  +  
Sbjct: 55  SLVVALSVSTTLSGAMAYRSARLMRQLTSTRAELMRMSRTDPLTGLLNRRGFDEAAATQL 114

Query: 126 ------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGE 178
                  + +  +  D+D FK IND++GH +GD+V+A + D L        M + R GGE
Sbjct: 115 AQANFAGQPVVAMMCDLDRFKAINDHYGHNIGDRVLAEIGDILRDFAAPRGMLIARHGGE 174

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EFA   +G S+++A   A +L ++   +      G  + +T+S G+A     E +S ++ 
Sbjct: 175 EFAGLMVGVSDEQANDYALELCRLCATA--VACDGRLVAVTMSFGLAAYRGGE-LSALMR 231

Query: 239 RADQALYVAKKSGR 252
           RAD ALY AK  GR
Sbjct: 232 RADLALYRAKDLGR 245


>gi|329888165|ref|ZP_08266763.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328846721|gb|EGF96283.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 784

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 93/186 (50%), Gaps = 10/186 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQ 141
             L+       RI+ L+R D L+GL N ++F+  L          E L++   D+D FK+
Sbjct: 338 RDLRARMAQERRIAHLARNDSLTGLPNRASFLERLTRQKQTAAEGESLALFALDLDRFKE 397

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH VGD+++  +++++        F+ R GG+EF A A  ++  EA  +A  LR+
Sbjct: 398 VNDLYGHAVGDQLLCIIAERMKGALREGEFIARQGGDEFLALASVATRDEARAVAERLRQ 457

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +   Q        +    S G++      + +ST+I  AD A+Y AK S   + VCF +
Sbjct: 458 AV--IQTVTLDHADVSCGASIGVSLWPEDAQDVSTLINNADLAMYRAKAS-LTQDVCFYE 514

Query: 261 IENNTC 266
            + +  
Sbjct: 515 ADMDQA 520


>gi|330806852|ref|YP_004351314.1| diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327374960|gb|AEA66310.1| Putative diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 308

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYF 139
              + E  +  + + +L+  D L+   N   F        E        ++ +  DID F
Sbjct: 130 AEDITEKKLLESELQRLATTDVLTQSSNRRHFFECAHREFEQARLQGMPMAFLLLDIDDF 189

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND +GH  GD V+  +++    V       GR+GGEEFAA   G +   A  +A  L
Sbjct: 190 KVINDTYGHQEGDTVLQRIAESGRSVLRRGDLFGRIGGEEFAAVFPGCAPDMALQVAERL 249

Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++ I+      S      IT+S G+       + + ++  RAD A+Y AK+ G+NR++ 
Sbjct: 250 QREIQRLAFR-SGERGFGITVSQGLTGITADDQSLDSLFARADAAMYEAKRQGKNRIIA 307


>gi|291280709|ref|YP_003497543.1| hypothetical protein DEFDS_P167 [Deferribacter desulfuricans SSM1]
 gi|290755411|dbj|BAI81787.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 420

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 8/174 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           +++L     +I + S ID L+ + N + F       I     +NE +S++  DID FK+I
Sbjct: 241 IEQLQKELEQIKRESEIDTLTNVFNRNTFDKYIVKAIDRFKKHNESVSVIMLDIDDFKKI 300

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           NDN+GH VGD V+   +  L         + R GGEEF      +   +A  ++  + K 
Sbjct: 301 NDNYGHLVGDSVLRNFAAILKNSVRNSDLIFRYGGEEFIIVLPETKISQALSISERILKE 360

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  +   +    S+ +T S G+ E   ++ + T++ R D  LY +K +G+N++ 
Sbjct: 361 LNKTSFKLKKD-SLKVTASMGVTESKMEDNVETLLKRVDNYLYKSKATGKNKIT 413


>gi|152983039|ref|YP_001352601.1| sensory box protein [Janthinobacterium sp. Marseille]
 gi|151283116|gb|ABR91526.1| sensory box protein [Janthinobacterium sp. Marseille]
          Length = 914

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 11/184 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           ++   + +       + +L+  D L+ L N    ++ L           + L+++F D+D
Sbjct: 463 VTFRDVSDRKAHEEELHRLATKDTLTNLPNRYWLMNHLPKALNEANEKQDSLAVLFIDLD 522

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILA 196
            FK IND  GH  GD ++  ++ +L  V      V RLGG+EF         QE  +++A
Sbjct: 523 DFKNINDTLGHSSGDSLLQVVASRLESVLRPGDSVVRLGGDEFTLLLESLPLQEDISLIA 582

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
           N + +    +Q        + I+ S GI+          T++  AD A+Y AK  G+N+V
Sbjct: 583 NRIMQTF--NQPFEIQQKMLTISASMGISRYPFDGRDAETLLKNADIAMYSAKADGKNKV 640

Query: 256 VCFS 259
             + 
Sbjct: 641 RVYD 644


>gi|117919661|ref|YP_868853.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117611993|gb|ABK47447.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 578

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 108/246 (43%), Gaps = 21/246 (8%)

Query: 32  SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIIS---------ITISLLL 82
           S    IF   +++   I+L          ++ ++    ++  I+         IT +L L
Sbjct: 325 SFVILIFCGGILYCFFIWLTSWHFIAKGIIKPVIATRDAMNAIANEKLDTQMPITDNLEL 384

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFD 135
             +  S+   L     ++  ++  D L+G  N     S +         +N  LSIV FD
Sbjct: 385 QQMVSSLET-LKTYAAQVKAMAETDGLTGCYNRRYLDSQIQKELIYANDHNMPLSIVMFD 443

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           ID FKQ ND +GH +GD+ +  + +    +       + R GGEEF      S  ++A  
Sbjct: 444 IDNFKQFNDRYGHVLGDQCLKQIVNAAKSILQRPTDILARYGGEEFMLLLPSSHLEDAYK 503

Query: 195 LANDLRKIIENSQINISS-GPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSG 251
           +A  LRK I    I       S  +TIS G+A     + I T  ++ +AD+ALY AK+ G
Sbjct: 504 IAERLRKAIIALHIPHEDSSHSGLVTISLGVACWQPSQLIDTNRLLCQADEALYQAKQQG 563

Query: 252 RNRVVC 257
           RNR   
Sbjct: 564 RNRTEV 569


>gi|323498567|ref|ZP_08103560.1| hypothetical protein VISI1226_09849 [Vibrio sinaloensis DSM 21326]
 gi|323316456|gb|EGA69474.1| hypothetical protein VISI1226_09849 [Vibrio sinaloensis DSM 21326]
          Length = 597

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 115/245 (46%), Gaps = 19/245 (7%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISIT------- 77
              ++Y ++   +FI  +I++++        +P   L    +  LS +  + T       
Sbjct: 358 REVVLYIAMGLLLFIGLIIYLSHFIA-----SPITDLRR-RISTLSRMGKADTEYKPRND 411

Query: 78  -ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVF 133
            I  L    S  +  ++    + +++L+R D L+G+LN  A +     L   N    +  
Sbjct: 412 EIGDLFTAFSD-MAGKIKQKESELTRLAREDSLTGVLNRRALVNGAEELRRLNASCCVCM 470

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FKQ+ND  GH +GD+++      +     +   +GRLGGEEFA     +S  +A 
Sbjct: 471 MDLDDFKQVNDICGHAIGDEILIAFCQAVNCEIRSSDVLGRLGGEEFALLLPETSLDDAL 530

Query: 194 ILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            +A  +R  +E+     + S  +  +T+S G+ +    +P +  + +AD  LY AK +GR
Sbjct: 531 QIAERIRLRVEHELAGKLCSSHARPVTVSMGLVDWPKDQPFAQALIKADNCLYQAKHNGR 590

Query: 253 NRVVC 257
           N++  
Sbjct: 591 NQISV 595


>gi|311696871|gb|ADP99744.1| LOW QUALITY PROTEIN: diguanylate cyclase/phosphodiesterase [marine
           bacterium HP15]
          Length = 709

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 14/183 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           + S +  L      + + +  D L+GL N       L          +  +S+ + D+D 
Sbjct: 247 AFSDITALKNHARELDRAANYDDLTGLPNRQLLEERLRTARSHADRQHRSVSVCYLDLDG 306

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND +G   GD+ +  L+++L     +   V R+GG+EF     G    EA      
Sbjct: 307 FKGINDKWGQSAGDQTLRTLAERLTRALRSGDTVARIGGDEFVLLLQGDDNHEAVY---- 362

Query: 199 LRKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            ++I+      ++ G  ++ +T S GI            +I  ADQA+Y AK+ GRN+  
Sbjct: 363 -QRILATVGDPVTVGDQNVSLTASLGITRYPEDGSDAEGLIRHADQAMYSAKEKGRNQYH 421

Query: 257 CFS 259
            F 
Sbjct: 422 LFD 424


>gi|300716926|ref|YP_003741729.1| RNase II stability modulator [Erwinia billingiae Eb661]
 gi|299062762|emb|CAX59882.1| RNase II stability modulator [Erwinia billingiae Eb661]
          Length = 660

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 95/188 (50%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A   ++         +++ IV+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRVLANTDTITGLPNRNAINHAIAEALEQRVEQQIGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           ++ND +GH  GD+++  +S  ++        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KVNDAYGHMFGDQLLQAVSLAILSCLDKDQTLARLGGDEFIVLATAASQASLEAMASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + L++      I + SG SI I +S       H E   +++  AD A+Y AK++GR +  
Sbjct: 339 DRLKQPFRIGLIEVYSGCSIGIAVS-----PQHGEDKESLMRNADTAMYTAKENGRGKFC 393

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 394 IFSAEMNQ 401


>gi|313496735|gb|ADR58101.1| Diguanylate cyclase [Pseudomonas putida BIRD-1]
          Length = 427

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 73/283 (25%), Positives = 122/283 (43%), Gaps = 35/283 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIY---FSIFFSIFIATVI--FIANIFLFYIGL 55
           + +S  + L  WL  E    +   H   +    + +F  +FI  V+    A   L    L
Sbjct: 141 LQQSYPEALLTWLA-EIRWPALHGHWMSLIQMVYPLFLGVFILLVVQYLRAPRPLHAAQL 199

Query: 56  TPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
               G+ ++L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL  
Sbjct: 200 IGLLGIFWMLPQTFILPFTLNIMCSQVMLMIAAAVAHEAY-------QMAFRDELTGLPG 252

Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
             A    +        I   D+D+FK+ ND  GH VGD+V+  ++ +L  V G       
Sbjct: 253 RRALNERMQRLGRNYVIAMTDVDHFKKFNDTHGHDVGDQVLRLVASRLSKVTGGGRAYRY 312

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-------------------SSGPS 215
            G EEFA    G +  E       +R++I N  +++                   S+G +
Sbjct: 313 GG-EEFALVFAGKTAAECVPHVEAVREVIANYVMHLRDQHNRPQDDTAGRQRRAGSTGGT 371

Query: 216 IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           + +TIS G+AER         ++  ADQALY AK +GRN V+ 
Sbjct: 372 VSVTISIGVAERQADHRNPEAVLKSADQALYSAKGAGRNCVMV 414


>gi|261319096|ref|ZP_05958293.1| predicted protein [Brucella pinnipedialis B2/94]
 gi|265986901|ref|ZP_06099458.1| predicted protein [Brucella pinnipedialis M292/94/1]
 gi|261298319|gb|EEY01816.1| predicted protein [Brucella pinnipedialis B2/94]
 gi|264659098|gb|EEZ29359.1| predicted protein [Brucella pinnipedialis M292/94/1]
          Length = 391

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 91/192 (47%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS--- 130
           L++G I+     I  +   +  R++  +  D L+   N       ++   S  + LS   
Sbjct: 197 LMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQSPNRRYIGKLLTQKKSARDGLSRDG 256

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSS 188
            ++  D+D FK +ND +GH  GD+V+  ++ +L+ +      V R+GG+EF      G+S
Sbjct: 257 FLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTS 316

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++  I+A+ + + +    I +S    + +  S GI           I   AD+A+Y AK
Sbjct: 317 KEQTDIIASRIIREVSK-PIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAK 375

Query: 249 KSGRNRVVCFSD 260
             G+NR   F +
Sbjct: 376 SKGKNRFEYFEE 387


>gi|149908356|ref|ZP_01897019.1| PAS:GGDEF [Moritella sp. PE36]
 gi|149808519|gb|EDM68454.1| PAS:GGDEF [Moritella sp. PE36]
          Length = 360

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 12/195 (6%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------- 124
           V++   +S    Y+   I KE   S  +I+ L+  D L+ L N       L         
Sbjct: 160 VMLETIVSKRTQYLEKEI-KERRESEEKITYLANHDQLTQLANRYLLFGRLKQACARAEI 218

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
            + K++I+F D+D FK IND  GH  GD+V+   + ++     +     R GG+EF    
Sbjct: 219 EDTKVAILFIDLDGFKFINDKMGHDFGDQVLIEQAKRISCCLRSTDTAARYGGDEFVVLL 278

Query: 185 LGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQ 242
                 +    +A  LR  +  +Q  + +  S++++ S GI+       I   +I +AD+
Sbjct: 279 TDVRDIRSIEKVAKRLR--VSLNQPVMINNLSVNLSASIGISFFPDHTLIPKELISQADK 336

Query: 243 ALYVAKKSGRNRVVC 257
           A+Y  K  G+N    
Sbjct: 337 AMYQVKNKGKNGFQF 351


>gi|119897648|ref|YP_932861.1| EAL/GGDEF/PAS/PAC-domain-containing signalling protein [Azoarcus
           sp. BH72]
 gi|119670061|emb|CAL93974.1| EAL/GGDEF/PAS/PAC-domain containing signalling protein [Azoarcus
           sp. BH72]
          Length = 947

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 12/209 (5%)

Query: 65  LVENLSLVIISITISLLLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL- 122
           L   LS+  +  +      Y+   + +     +   +  ++  D L+ L N S       
Sbjct: 470 LPAQLSVSAVLNSAGGATHYVGALTDMSAHKQTEALLRHMAEYDALTDLPNRSLLHDRAR 529

Query: 123 ------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                    +   +++F D+D FK +ND+ GH VGD ++   + +L  +      + R G
Sbjct: 530 AAIQGAARTDRLAALLFIDLDRFKNVNDSLGHSVGDALLRQAAKRLASLLHGGDTIARPG 589

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKE-PIS 234
           G+EF       +++  A+ AN   +II+            + +T S GIA          
Sbjct: 590 GDEFVMLLAEITDR--AVAANRAAQIIDAFSTPFRVEHYELSVTPSIGIAIAPDDGVDAD 647

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           T++  AD A+Y AK+SGRN    F+D  +
Sbjct: 648 TLLRNADAAMYHAKESGRNTYRFFTDEMS 676


>gi|121728390|ref|ZP_01681418.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae V52]
 gi|121629324|gb|EAX61756.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae V52]
          Length = 684

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+GL N   F   L    +    L +++ DID FK IND+ GH +GDKVI  ++ 
Sbjct: 256 AHIDSLTGLYNRHGFTKRLEQCIQNETPLVMLYLDIDNFKNINDSLGHHIGDKVIKEVAA 315

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHIT 219
           +L  +      +G LGG+EF            A +LA+ +  +I  +Q       S  + 
Sbjct: 316 RLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLI--NQPFDLHHFSKRLA 373

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +           ++  AD A+Y AK+ GRNR++ F+D  N   
Sbjct: 374 CSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEA 421


>gi|311693142|gb|ADP96015.1| diguanylate cyclase [marine bacterium HP15]
          Length = 497

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 10/178 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +  +   R+   +  D L+ L N  A+   L         Y+  L+I   DID FK+IND
Sbjct: 321 QEQVRKERLR--AMTDLLTELPNREAWQERLSFEYNRWQRYSHPLTIGVLDIDLFKRIND 378

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           ++GH  GD+V+  ++ +      T  FV R GGEEF      +   +A  + + LR+ + 
Sbjct: 379 SYGHKAGDRVLQLVAREFRDRLRTTDFVARFGGEEFVVLFPETEPSDARAVVDKLREHVG 438

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
               +   G  + +T SAG+A     +   ++  RAD+ALY AK +GR++V+     +
Sbjct: 439 KLPFHFR-GEPVTVTFSAGLAGFIAGDTEESVFDRADRALYQAKDAGRDQVMISDSAD 495


>gi|295700242|ref|YP_003608135.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
 gi|295439455|gb|ADG18624.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
          Length = 402

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 124/260 (47%), Gaps = 13/260 (5%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63
           +   F+  W+  ++   +  P     Y  +  +  +  V+      ++  GL   +   +
Sbjct: 132 AYIRFVIAWVV-QRYRPAGRPK--YAYHFVAIAAVLGAVVHAVRCVVYGSGLA--HESVF 186

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           +    L++  + + I  L     G ++        R+ +L+ ID L+G L   AFI+   
Sbjct: 187 LEETPLNVAFLGMAILTLPCLSVGMVMLTHDRLAERMERLATIDDLTGALGRRAFIARTE 246

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
           +          KLSI   DID FK IND FGH  GD+ +A ++  +         +GR+G
Sbjct: 247 ALFELAKVAKSKLSIAILDIDNFKSINDRFGHAAGDQALAHVALTISRELRQTDVLGRIG 306

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236
           GEEFA     + ++EAA L N LR ++  S     +G  +  T+SAG+ E    + ++++
Sbjct: 307 GEEFALLMPLTGKEEAARLTNRLRTLVAASVARAPTG-DVACTLSAGVDEFGDGDTVASV 365

Query: 237 IYRADQALYVAKKSGRNRVV 256
           + RAD ALY AK +GRN V+
Sbjct: 366 MARADTALYAAKANGRNCVM 385


>gi|172036792|ref|YP_001803293.1| hypothetical protein cce_1877 [Cyanothece sp. ATCC 51142]
 gi|171698246|gb|ACB51227.1| hypothetical protein cce_1877 [Cyanothece sp. ATCC 51142]
          Length = 699

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 12/187 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDI 136
           +    + E  ++  ++ + +  D L+ L N   F   L    E+         +++F D+
Sbjct: 253 LVFRDITEYKLTTQKLHRQAFYDSLTNLPNRRWFQERLIDAIERVKRNSNYLFAVLFLDL 312

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAIL 195
           D FK IND+ GH +GD+++  +S +L  +  +   V R GG+EFA       S  +A  +
Sbjct: 313 DRFKVINDSLGHQMGDRLLNEVSRRLTHLLRSIDTVARFGGDEFAILLEDIHSRDDAIHV 372

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           A  +   + +    I  G  +    S GI    +    +  +I  AD A+Y AK  GR  
Sbjct: 373 AQRINDSLNS--PFIIDGKEVFTNSSIGIVLSSNGYLSMDNLIRDADIAMYRAKAKGRAC 430

Query: 255 VVCFSDI 261
              F  +
Sbjct: 431 YAIFDPV 437


>gi|153933976|ref|YP_001382759.1| putative diguanylate cyclase [Clostridium botulinum A str. ATCC
           19397]
 gi|153934947|ref|YP_001386310.1| putative diguanylate cyclase [Clostridium botulinum A str. Hall]
 gi|152930020|gb|ABS35520.1| putative diguanylate cyclase [Clostridium botulinum A str. ATCC
           19397]
 gi|152930861|gb|ABS36360.1| putative diguanylate cyclase [Clostridium botulinum A str. Hall]
          Length = 892

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 10/214 (4%)

Query: 61  LEYILVENLSLVIISITISLLLGYISG--SILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           LE I +E L     ++  S+ + Y +   + + E      +I  L+  D L+GL N    
Sbjct: 427 LEEIYIEELRKWFSAVVYSMEVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKI 486

Query: 119 ISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           I ++        NEK +++F D+D+FK IND  GH VGD V+  +S +  ++      +G
Sbjct: 487 IETINKTINNYENEKFAVLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKHKIG 546

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           RLGG+EF      +S  +A  LA  +   + N  I       + I  S GI+      + 
Sbjct: 547 RLGGDEFIIVQNITSISDAEKLACKICTTL-NHSIKYKED-DLFIGASIGISIYPEDGKD 604

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            ST++  AD A+Y AKK+G  +   +S   N   
Sbjct: 605 TSTLMKNADAAMYAAKKNGGYKYEVYSRSMNERA 638


>gi|54302402|ref|YP_132395.1| putative signal transduction protein [Photobacterium profundum SS9]
 gi|46915824|emb|CAG22595.1| putative signal transduction protein [Photobacterium profundum SS9]
          Length = 722

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 95/210 (45%), Gaps = 18/210 (8%)

Query: 73  IISITISLLLGYISGSILKE-------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
           + SITI+L   +    +L++       +    + + + +  D L+GL N       L   
Sbjct: 258 LTSITIALFGSWAMWFVLRQPEKLQTIVKQKTHELEKFALYDYLTGLANRRLLNEHLERV 317

Query: 126 NEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
            ++        +++ FD+D FK+IND+ GH VGD V+  +S +L  V      V R+GG+
Sbjct: 318 IQQTEYCGNSAALLSFDLDDFKRINDSQGHEVGDGVLQQISHRLNSVVNKSDIVARIGGD 377

Query: 179 EFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTI 236
           EF      S    +A  +A  L  +I  S+    +   + ++ S GI         +ST+
Sbjct: 378 EFTVLLSTSDSAFDAGRIAERLINVI--SEPIFLNNKELSVSASVGITMIPSDGNDVSTL 435

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           +  AD A+Y AKKSG+     F+       
Sbjct: 436 LRNADMAMYSAKKSGKRNYHFFNKALQKKA 465


>gi|238797835|ref|ZP_04641328.1| Diguanylate cyclase [Yersinia mollaretii ATCC 43969]
 gi|238718363|gb|EEQ10186.1| Diguanylate cyclase [Yersinia mollaretii ATCC 43969]
          Length = 372

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 111/248 (44%), Gaps = 15/248 (6%)

Query: 29  IYFSIFFSIFIATVIF---IANIFLFYIGLTPFYG-LEYILVENLSLVIISITISLLLGY 84
           I  +I F   + + ++      IF   I L  FY  L  +L    +L+   I +  L+  
Sbjct: 108 ILITIIFIPLLLSRVWEKKSNRIFYITIILIAFYRVLAALLFVPSALIWTQIVVYQLISA 167

Query: 85  ISGSI------LKELFI-SYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFF 134
           +  +I       KE +I +Y  +   + ID L+ L N ++    L    S  +   ++  
Sbjct: 168 LCLAICYHALNFKERYIYAYFAMKNRANIDKLTQLNNRASVDYRLNTIHSSRQACGLMIL 227

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D+FK +ND +GH  GD ++  +   L        FVGR GGEEF         Q    
Sbjct: 228 DLDHFKLVNDTYGHDGGDLLLTEVGKLLTSSVRDEDFVGRFGGEEFIVITHSHDPQTIKT 287

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +A  + + +EN  + +  G  +  TIS G +       +   +   D+ALY AKK GRN+
Sbjct: 288 VAERICQRVENLNVELPDGRKVKTTISIGASLYLPGMSMLKAMKMTDEALYQAKKQGRNQ 347

Query: 255 VVCFSDIE 262
           VV +S + 
Sbjct: 348 VV-YSRLM 354


>gi|226356808|ref|YP_002786548.1| diguanylate-cyclase [Deinococcus deserti VCD115]
 gi|226318798|gb|ACO46794.1| putative diguanylate-cyclase [Deinococcus deserti VCD115]
          Length = 605

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 8/167 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
              + Q S  D ++GL N      ++           + +S++  DID+FK+ ND FGH 
Sbjct: 429 RETLRQQSIRDPMTGLFNRRYLEETMERELHRATRDQQSVSVLAVDIDHFKKFNDTFGHE 488

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+   +  +   F     + R GGEEF    + +  ++    AN  R+ I    + 
Sbjct: 489 AGDAVLLAAAKTMQEYFRAEDIICRYGGEEFIIVLVNAPHEDILARANGFREKIAALTVK 548

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
            +      +T+S G+A    H   +  +I +ADQALY+AK+ GRNRV
Sbjct: 549 HNRQMLGQVTVSIGVATYAEHGTDVRVLINQADQALYLAKQEGRNRV 595


>gi|261340951|ref|ZP_05968809.1| diguanylate cyclase [Enterobacter cancerogenus ATCC 35316]
 gi|288316811|gb|EFC55749.1| diguanylate cyclase [Enterobacter cancerogenus ATCC 35316]
          Length = 594

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 11/177 (6%)

Query: 93  LFISYNRIS----QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           L ++  R+     + +  D L+GL N      +L           E +S +  DID+FK 
Sbjct: 412 LALANQRLRDALLEKALFDPLTGLRNRHHLEDTLRTQMTQAMRNKEPISCLMIDIDHFKS 471

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH  GD+VI  ++  +           R GGEEF A   G+ E+ A   A  +  
Sbjct: 472 INDRFGHEAGDQVIKSVATIIQRAVHDTGLAFRYGGEEFLALLTGADEEAAHACATKIYN 531

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            ++    +        + +S GIA          ++  AD ALY AK+ GR+R+V F
Sbjct: 532 GVQALSPHYGLTEIGPVDVSIGIASYPQHAQSDNLLRAADVALYRAKELGRSRIVSF 588


>gi|152969717|ref|YP_001334826.1| putative sensor kinase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150954566|gb|ABR76596.1| putative sensor kinase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 594

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 11/177 (6%)

Query: 93  LFISYNRIS----QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           L ++  R+     + +  D L+GL N      +L S        +  LS +  DID+FK 
Sbjct: 412 LALANQRLRSALLEKALFDSLTGLRNRHHLDEALHSQMALAVHTHTPLSCLMIDIDHFKT 471

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH  GD VI  ++  +           R GGEEF     G  E  A   A+++  
Sbjct: 472 INDRYGHEAGDLVIKSVATIVQRAVRDIGMAFRYGGEEFLVLLPGIDEAGAHQCASEIYT 531

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + N  +         + +S GIA         +++  AD ALY AK+ GR+R+V F
Sbjct: 532 QVRNMTLRDGLTEIGQVDVSIGIASYPQHTQSDSLLRAADAALYRAKELGRSRIVSF 588


>gi|313682319|ref|YP_004060057.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
 gi|313155179|gb|ADR33857.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
          Length = 592

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 89/188 (47%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYF 139
           S + ++  +  +I   +  D L+ L N   F+  L     K+        ++++ D+D F
Sbjct: 146 SDMSKMEEANQKIWYETNFDALTDLPNRHMFLHHLEQQLSKIERNNFRRTALMYIDLDDF 205

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K+IND +GH +GD ++  ++ +++          R+GG+EF        +      +A +
Sbjct: 206 KEINDMYGHQIGDTLLKKVTTRIISCIRNTDLCFRIGGDEFTVILPDIENLYMVETIAQN 265

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           + K + +S   + +  ++ I+ S GIA          TI+  ADQA+Y +KKSG+N    
Sbjct: 266 ILKEL-SSPFELENSKNVFISASIGIAIAPDDAADSETILKYADQAMYQSKKSGKNTSNF 324

Query: 258 FSDIENNT 265
           F+    + 
Sbjct: 325 FAQSMQDA 332


>gi|300694165|ref|YP_003750138.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum PSI07]
 gi|299076202|emb|CBJ35516.1| putative signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum PSI07]
          Length = 892

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 9/184 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDI 136
            +S + + +   +  R+  L+  D L+GL N S FI             + +L++ F D+
Sbjct: 434 MLSFADITDFKRAEQRLRHLASHDALTGLTNRSFFIAHLEGAIERARDESRELALFFLDL 493

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK +ND  GH  GD ++   + +L    G    + RLGG+EF        E +   L 
Sbjct: 494 DRFKSVNDTAGHACGDTLLQSAAARLTDCIGPGDVIARLGGDEFVILIEQRVEGKRIALL 553

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
            +          +  +G   ++ +S G+A   H     + ++  AD A+Y AK++GRNR 
Sbjct: 554 AERLLAAMREPFDTVNG-RYYLGVSIGVALYPHDGISGTDLLRSADAAMYRAKQNGRNRA 612

Query: 256 VCFS 259
             ++
Sbjct: 613 QFYT 616


>gi|171317768|ref|ZP_02906949.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria MEX-5]
 gi|171097052|gb|EDT41907.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria MEX-5]
          Length = 667

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 19/192 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDID 137
           SG  + E   +  R+S+L+  D L+GL N  A    +G+           ++ I+F D+D
Sbjct: 218 SGIDVTEERNAQLRLSELANTDMLTGLPNRHAISERIGAALAVDRTDMRGQVGILFLDLD 277

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAA 193
            FK++ND++GH  GD+++  +S  +     +   + RLGG+EF       +    E  A 
Sbjct: 278 NFKRVNDHYGHITGDRLLQDVSTIISGCLPSGATLARLGGDEFLVLFEHGTRPLLEATAQ 337

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
           I+   LR  I    +       ++ + S GIA    H + + T+I  AD A+YVAK+ G+
Sbjct: 338 IILERLRTPIHLGLM------EVYTSCSIGIAMYPQHGDSLETLIRSADTAMYVAKEEGK 391

Query: 253 NRVVCFSDIENN 264
           +    FS   N 
Sbjct: 392 HTYRVFSLEMNQ 403


>gi|269963603|ref|ZP_06177926.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831616|gb|EEZ85752.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 539

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 99/204 (48%), Gaps = 18/204 (8%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------I 119
           E   L+ + + +S++L Y         FI   RI  L+  D L+GLLN +AF       I
Sbjct: 339 ERKWLMQVGVVLSIILAYFIARFQLRAFIDNQRIHHLAHHDSLTGLLNRAAFQAGATETI 398

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
           S      +K  +V+ D+D FK IND +GH  GDK +  ++  +  +FG+   + RLGG+E
Sbjct: 399 SQSVKAGKKACLVYLDLDGFKFINDEYGHAAGDKTLEHVASVMNRIFGSKALLARLGGDE 458

Query: 180 FAAAA-----LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PI 233
           FA        + S E  AA L   ++  IE             +T S G      ++  +
Sbjct: 459 FAILLSSQEHMQSPEHYAASLIQLIQDPIEVLPDTFH-----QVTTSIGGCYTKGQDCTL 513

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
             ++++AD A+Y AKK+G+NR   
Sbjct: 514 EELMHQADMAMYEAKKAGKNRYFF 537


>gi|163852193|ref|YP_001640236.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163663798|gb|ABY31165.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 954

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 92/196 (46%), Gaps = 17/196 (8%)

Query: 83  GYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVF 133
           G+I+    + + + +  RI  ++R D L+GL N   F   L     +         + + 
Sbjct: 501 GWIATYEDVTQRYEAEARIITMARKDALTGLANRMVFGERLEEAAARLDDGAGAGFATLC 560

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-----S 188
            D+D FK++ND  GHP+GD ++  ++++L         V RLGG+EFA    G      +
Sbjct: 561 LDLDRFKEVNDTLGHPIGDGLLRSVAERLQGCLRDTDLVARLGGDEFAIVQAGVQAGTHA 620

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVA 247
            ++A+ LA  L    +  Q  +  G ++ + +S GI+    H      ++  AD ALY A
Sbjct: 621 RRDASALAKRLIAAFQ--QPFLLDGHTVTVGLSIGISLAPEHGTSPEKLLKSADLALYRA 678

Query: 248 KKSGRNRVVCFSDIEN 263
           K +GR     F +  +
Sbjct: 679 KATGRGCWAFFDEEMD 694


>gi|153213333|ref|ZP_01948722.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|124115986|gb|EAY34806.1| GGDEF family protein [Vibrio cholerae 1587]
          Length = 353

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 111/258 (43%), Gaps = 29/258 (11%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           IW C       F P  F I+ S  F+   + +  I    + Y          + L +  +
Sbjct: 98  IWSC-------FVPILFYIFTSARFAFVTSCLFLIIQSNIIY----------WQLQQTGA 140

Query: 71  LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSY 125
            +  S+ + L   YI   ++  ++    R     +  L+  D L+G  N  +  +S   +
Sbjct: 141 ALSWSVLLHLCFAYIGIWVVAHVYEDNRRKIENSLLYLASRDPLTGAHNRLSLTTSFQHF 200

Query: 126 NE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   L ++  D+D+FK IND FGH  GDKV+   +     V G    + R+GGEEF
Sbjct: 201 ERFSDQTSLCLLVIDLDFFKSINDQFGHDTGDKVLIETTRLFTQVVGDNN-LYRIGGEEF 259

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                  S ++A  +   LR I+            + +TIS G+ E    + ++ ++  A
Sbjct: 260 CVTLFDQSLEQAGRVCERLRAIVSQHLFAFGE-KRVQVTISIGVCEYQAGDQLNDLLKFA 318

Query: 241 DQALYVAKKSGRNRVVCF 258
           D  LY AKK+GRN+V  F
Sbjct: 319 DMELYRAKKAGRNQVRLF 336


>gi|262275547|ref|ZP_06053357.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Grimontia
           hollisae CIP 101886]
 gi|262220792|gb|EEY72107.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Grimontia
           hollisae CIP 101886]
          Length = 498

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 91/205 (44%), Gaps = 17/205 (8%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG----- 123
           LS+ I S +     G I+  I++++   + R+   S  D L+G+ N              
Sbjct: 296 LSIAISSFSFEEHQGSIA--IIRDITD-FKRLESDSMHDALTGVYNRRHIEERFEDEVKR 352

Query: 124 --SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              Y   LS++  D+D FK +ND  GH  GDK +   ++ L         +GR GG+EF 
Sbjct: 353 AKRYARALSLLVVDLDNFKNLNDTEGHRAGDKGLVVAAEHLRSQLRKHDHIGRWGGDEFV 412

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI---STIIY 238
                    +A  +A  +R+  E  Q          +T+S G+A       +     +  
Sbjct: 413 VICPELDRADAIEIAERIRRRFEAQQFPWCH----KMTMSIGVASLSPDTSVMTPRDLFE 468

Query: 239 RADQALYVAKKSGRNRVVCFSDIEN 263
            ADQALY+AK+ GRNRV  F D++ 
Sbjct: 469 EADQALYLAKERGRNRVEHFFDLQR 493


>gi|222870108|gb|EEF07239.1| predicted protein [Populus trichocarpa]
          Length = 205

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 9/179 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQI 142
            E     +++  L+  D L+G+ N  AF+  L    + L        +++  DID+FKQ+
Sbjct: 20  TERQQRESQLETLALTDALTGIPNRRAFMERLTMELDHLRSGLVAHSTLIMLDIDHFKQV 79

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH VGD V+  L   +         VGRLGGEEFA     +  +     A  LR+ 
Sbjct: 80  NDGYGHAVGDIVLKELLASVAQEMRKEDMVGRLGGEEFAVLLSDTDAEVGLRRAESLRET 139

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +    I+      +HITIS G+ E    +      + RAD ALY +K++GRN+   +S+
Sbjct: 140 VAARAIDAGLAGDLHITISLGVYELQRSDASAQGCLERADAALYYSKRNGRNQSTLWSE 198


>gi|158316321|ref|YP_001508829.1| serine/threonine protein kinase [Frankia sp. EAN1pec]
 gi|158111726|gb|ABW13923.1| serine/threonine protein kinase [Frankia sp. EAN1pec]
          Length = 1649

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 79/183 (43%), Gaps = 18/183 (9%)

Query: 91   KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
            ++L  + +++ QLS  D L+GL N                 +   +++   DID+FK  N
Sbjct: 1462 RQLAAANHQLEQLSITDPLTGLANRRRLGEVLAVEWERARQHAGPIALAMVDIDHFKLYN 1521

Query: 144  DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            D+FGH  GD+ +  ++  L    G  +   R GGEEF      +     A +A  L + +
Sbjct: 1522 DHFGHAAGDRCLQRVAACLAGNIGDTLLAARYGGEEFTVVMPDTDLGAGAQVARHLCRAV 1581

Query: 204  ENSQINISSGPSIHITISAG-----------IAERCHKEPISTIIYRADQALYVAKKSGR 252
            E+            IT+S G            A+    + +   +  AD ALY AK SGR
Sbjct: 1582 EDLAEPHPLTAERIITVSIGVTATVPVAAAAAADAATGDGMVAFVKAADTALYRAKHSGR 1641

Query: 253  NRV 255
            N+V
Sbjct: 1642 NQV 1644


>gi|313500576|gb|ADR61942.1| GGDEF domain-containing protein [Pseudomonas putida BIRD-1]
          Length = 423

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 10/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L      ++  +  D L+GL N + F   L           + L+++F D D+FKQIND 
Sbjct: 237 LQSENQTLAHQASHDSLTGLPNRAFFEGRLSRSVLNAARQQDHLALLFLDSDHFKQINDT 296

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKIIE 204
            GH VGD+V+  +++++         V RLGG+EFA       + ++A  +A  +   + 
Sbjct: 297 LGHAVGDEVLISVAERVRAQLREQDLVARLGGDEFAVLLTPLHTRKDAEHIAEKIVASM- 355

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
              + + SG S+  ++S GIA         ++++  AD A+Y AK+  R     
Sbjct: 356 KLPVQLDSGLSVSTSLSVGIAYYPDDGADPASLLNAADAAMYQAKRKRRGHWQV 409


>gi|296135035|ref|YP_003642277.1| diguanylate cyclase/phosphodiesterase [Thiomonas intermedia K12]
 gi|295795157|gb|ADG29947.1| diguanylate cyclase/phosphodiesterase [Thiomonas intermedia K12]
          Length = 799

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 110/247 (44%), Gaps = 16/247 (6%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL---VIISITISLLLGYISGSI 89
           +F    IA +  IA +        P  G     +  ++    +  SI   L     S  +
Sbjct: 125 VFMYGLIAAMTLIALLLSAGRWSIPTNGWTQQTLLWIAFTEALAFSIATQLFKERFSRKL 184

Query: 90  LK---ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQ 141
           ++   ++   Y     ++  D L+GL N  AF+  L +      ++ L++   D+D FK 
Sbjct: 185 VQHNEQIRDEYKTYRTIAHRDDLTGLANRRAFMQKLSATLVKHPHQALAVGMIDLDRFKI 244

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           +ND  GH VGD+++  +  +L  V      + RLGG+EF     G +S  +   +A+ L 
Sbjct: 245 VNDRLGHSVGDQLLVAVGQRLRSVLRQTDVLARLGGDEFVVMFTGYTSLDQLRAVADRLV 304

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCF 258
           K +E  Q       ++ I +S GI  +   +P+   T++ RAD A+Y +K+ GR +   F
Sbjct: 305 KSME--QEFTVQSHALQIGLSLGIVIQQQAQPVDALTLMRRADLAMYASKEGGRQQYRFF 362

Query: 259 SDIENNT 265
                + 
Sbjct: 363 DQHMEDA 369


>gi|126660571|ref|ZP_01731676.1| hypothetical protein CY0110_22914 [Cyanothece sp. CCY0110]
 gi|126618164|gb|EAZ88928.1| hypothetical protein CY0110_22914 [Cyanothece sp. CCY0110]
          Length = 855

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/209 (24%), Positives = 86/209 (41%), Gaps = 19/209 (9%)

Query: 67  ENLSLVIISITISL-------LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +N SL+ ++  ISL       +L  I    ++E   +   +      D L+ L N   F 
Sbjct: 368 QNGSLLAVAGQISLTSYQGQEVLCLII-RDIRERKQAEEELQYQLLHDPLTNLPNRELFK 426

Query: 120 SSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L         +   L+++F DID F  IN+  GH +GDKV+    ++L         V
Sbjct: 427 QQLGVALAHAQRHEHLLAVIFIDIDSFTHINNTLGHSLGDKVLQSFGERLSSCIRAGDTV 486

Query: 173 GRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
            R G +EF        + ++   LA  +   ++  +  I     + I  S GIA      
Sbjct: 487 TRWGSDEFVLLLPQIKNTEDTVKLAQRIFDTLQ--RPFIFDDHRLQIKCSIGIAIYPQDG 544

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +    ++  AD ALY  K+ G+N    +S
Sbjct: 545 DNAEGLLKNADTALYRTKEQGKNHYQFYS 573


>gi|330981342|gb|EGH79445.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 530

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 96/214 (44%), Gaps = 13/214 (6%)

Query: 64  ILVENLSLVIISITISLLLGYI---SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +LV +LS++ I++   +L  ++   +  +   L  +   ++ L+  D L+GL N +    
Sbjct: 220 VLVASLSILGIALFSCILDSHLETRTAVLADSLTEANLELTHLALHDNLTGLPNRALLTE 279

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            +    ++        +++F D+D FK +ND FGH +GD ++  ++ +L         + 
Sbjct: 280 RIDRAMKRAVETGGCFALMFMDLDGFKPVNDAFGHHIGDLLLRQVALRLRNSLHRRDTLA 339

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           R+GG+EF         ++   +A   R++ E           + I++S GI     +   
Sbjct: 340 RVGGDEFVLLVELQHAEDVLAVAR--RQVSEVGTPFNIGEHQLQISLSIGICMYPGNGST 397

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              ++  AD A+Y  K +G+N    F    N+  
Sbjct: 398 QHELLINADAAMYHTKAAGKNGYSFFDASMNSNA 431


>gi|330825459|ref|YP_004388762.1| diguanylate cyclase [Alicycliphilus denitrificans K601]
 gi|329310831|gb|AEB85246.1| diguanylate cyclase [Alicycliphilus denitrificans K601]
          Length = 334

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 82/180 (45%), Gaps = 17/180 (9%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKLS----------IVFFDIDYFKQ 141
           + +Y  +   S  D L+GLLN   F         +   +          +   DID+FK 
Sbjct: 142 YQNYQNLLDYSERDALTGLLNRKTFEEQFARDAGSTPAADGGADLPRPWLAVIDIDHFKS 201

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND FGH  GD+V+  +++ L     +   + R GGEEF       +  +A  +   LR 
Sbjct: 202 VNDRFGHLYGDEVLILVANVLRAHCKSQDRIFRFGGEEFVVLLRSVTLAQARQVFERLRA 261

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            ++            HIT S G A      P+  ++ RADQALY AK+SGRNRV  + D+
Sbjct: 262 AMQAHAFPQIG----HITASIGFAASQRGSPVE-VLGRADQALYHAKESGRNRVCFYDDL 316


>gi|323491063|ref|ZP_08096255.1| sensory box/GGDEF family protein [Vibrio brasiliensis LMG 20546]
 gi|323314727|gb|EGA67799.1| sensory box/GGDEF family protein [Vibrio brasiliensis LMG 20546]
          Length = 582

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 13/199 (6%)

Query: 78  ISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           + ++   +S   L E  L  +   + +LS ID L+ + N   F   L           + 
Sbjct: 384 VLIMARDVSERYLAEQKLEEANQELERLSFIDGLTQISNRRRFDEQLETLWHLHIREQQP 443

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGS 187
           L+++  DIDYFK  ND +GH  GD  +  + +    V   +   V R GGEEF      +
Sbjct: 444 LTVILCDIDYFKGYNDFYGHQRGDDALIKVGEVFKKVLTRSSDCVARYGGEEFGFILPNT 503

Query: 188 SEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAE--RCHKEPISTIIYRADQAL 244
           + + A  +A  + + +    +       S  IT S G+            TII  AD AL
Sbjct: 504 TTEGALQVAKRIHEGVAALGLEHRKSKISNQITTSIGLVSIVPQPMTSSETIIALADSAL 563

Query: 245 YVAKKSGRNRVVCFSDIEN 263
           Y AK +GRN+       EN
Sbjct: 564 YQAKANGRNQTCVHHTSEN 582


>gi|317051149|ref|YP_004112265.1| diguanylate cyclase [Desulfurispirillum indicum S5]
 gi|316946233|gb|ADU65709.1| diguanylate cyclase [Desulfurispirillum indicum S5]
          Length = 549

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 60/167 (35%), Positives = 81/167 (48%), Gaps = 8/167 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++  L   D L+GLLNH+         +      N  L     DID+FK++ND  GHPV
Sbjct: 380 RQLHSLMVRDGLTGLLNHTESKRQLDILLERAKRANTPLCFAMLDIDHFKRVNDAHGHPV 439

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+VI  LS  L         VGR GGEEF      ++E +   +  +LR+       + 
Sbjct: 440 GDRVIKSLSHFLQQRLRKTDVVGRYGGEEFVIIFPDTTESDGQRVMEELREKFA-MVTHH 498

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   S   T S GIA   H    + I+ RADQALY AK  GRN+V+ 
Sbjct: 499 AGDQSFQCTFSCGIATFPHFSNATEIVDRADQALYSAKNQGRNKVIA 545


>gi|241662143|ref|YP_002980503.1| diguanylate cyclase [Ralstonia pickettii 12D]
 gi|240864170|gb|ACS61831.1| diguanylate cyclase [Ralstonia pickettii 12D]
          Length = 585

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
            +  E       +++++  D L+ LLN  AF     +           ++++ FDID+FK
Sbjct: 393 RLEVERAHLMQELARMAETDPLTQLLNRRAFEDRASAMCNAPHPKARLVALIMFDIDHFK 452

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH VGD+ +  ++        +   V R+GGEEFA      S  +A  +A+ LR
Sbjct: 453 RINDTYGHAVGDEALRTVAGLCRAEGPSADMVARIGGEEFAVMIWADSLAQARAVADHLR 512

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256
             I    +   +     +T S G+A     +   + +++ RAD+ LY AK +GRN V+
Sbjct: 513 HRIAEVTVPTGTDLPCRMTASFGVAVAPAADGPKLESLLRRADRLLYAAKLAGRNCVM 570


>gi|229151715|ref|ZP_04279916.1| Sensory box/GGDEF [Bacillus cereus m1550]
 gi|228631776|gb|EEK88404.1| Sensory box/GGDEF [Bacillus cereus m1550]
          Length = 828

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 10/205 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           IL   +++V I I       Y+    +  +      I+ L+  D ++ + N   F   L 
Sbjct: 361 ILFWYVTIVPIMIERQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELD 420

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     +K  +++ D++ FK IND  GH +GDKV+  ++ +        + + R+G
Sbjct: 421 RSIKRAQKTQDKFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIG 480

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           G+EFA      +EQ+   L   L +I E  +  + +  S ++++S GIA         +T
Sbjct: 481 GDEFAIIVHNQTEQQLLDLCKTLFRITE--EPFVVNQHSFYLSLSIGIAVYPFGGINTTT 538

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++  AD A+Y AK+ G N V  + +
Sbjct: 539 LLQHADIAMYSAKEKGNNAVCMYDE 563


>gi|171059969|ref|YP_001792318.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Leptothrix cholodnii SP-6]
 gi|170777414|gb|ACB35553.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptothrix cholodnii SP-6]
          Length = 810

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 12/187 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            +       + +++L+  D L+ L N       L              +++F D+D FK 
Sbjct: 360 DISARKAVEDEVNRLAFYDPLTQLPNRRLLRDRLAQALAASARSGMHGALIFIDLDNFKS 419

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILANDL 199
           +ND  GH  GD+++  +  +L         V RLGG+EF      LG+   E A  A  +
Sbjct: 420 LNDTLGHARGDQLLKLVGQRLTHCVRESDTVARLGGDEFVVIVQDLGARLDECATQAEGV 479

Query: 200 RKII--ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            + I    +Q     G   H T S GI       + +  ++  AD A+Y AK +GRN + 
Sbjct: 480 GEKILDALNQPYPLDGHVRHSTPSIGITLFADDRDSVDDLLKEADMAMYQAKTAGRNTLR 539

Query: 257 CFSDIEN 263
            F     
Sbjct: 540 FFDADMQ 546


>gi|153834214|ref|ZP_01986881.1| sensory box/ggdef family protein [Vibrio harveyi HY01]
 gi|148869402|gb|EDL68408.1| sensory box/ggdef family protein [Vibrio harveyi HY01]
          Length = 626

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 65/214 (30%), Positives = 97/214 (45%), Gaps = 22/214 (10%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           L ++    + +  I      +  YI+  + + E      ++  LS  D L+ L N   F 
Sbjct: 421 LNHVFTAIMRIQAIMAKSGKVSYYITSLVDISERKELEEKLRNLSERDGLTNLWNRRKFE 480

Query: 120 SSLGSYNEKL---------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
             L  +   L          +  FDID+FK+IND  GH  GD+VI  +++ L+       
Sbjct: 481 EQLAQHANMLERYPNTPTTCLALFDIDHFKRINDEMGHDEGDRVICSVAETLLSGVRNTD 540

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
           FV R+GGEEFA     ++ QEA ++ N LR  +E S           +T+S G ++    
Sbjct: 541 FVARVGGEEFAVLMPHTTIQEAEVVLNRLRVAVELSG-------DGSVTVSVGYSDLTAD 593

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVC---FSDI 261
              S     AD ALY +K +GRNRV     F DI
Sbjct: 594 RTRS--YKCADIALYESKSAGRNRVSICHSFDDI 625


>gi|330967776|gb|EGH68036.1| diguanylate cyclase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 501

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 97/227 (42%), Gaps = 13/227 (5%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR 99
           A   +     L  + +T   GL  ++      +I+ I    L+        ++L +S  +
Sbjct: 274 AFASWRTEALLSAVVVTSLLGLTGLIG---WFLIVDIRRRTLIENQLRGAQQQLILSNRQ 330

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+GL N   F  +L             L ++  DIDYFK+ ND FGH  GD
Sbjct: 331 LELLAMKDALTGLANRRCFDQTLTKEARRAQREGTTLVLLMIDIDYFKRFNDTFGHVAGD 390

Query: 153 KVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
             +  + + L   V      V R GGEE       +  Q A ++A  +   +E   I  +
Sbjct: 391 VCLRAVGEILEDSVKRPSDLVARYGGEEMGIIMPNTDGQGATVVAQLIIDRLERKNIRHN 450

Query: 212 SGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S P   +++S GI  A     + +   I  AD+ALY AK  GRN+  
Sbjct: 451 SSPFGRVSVSIGIIAAAGSQLDNLMGFIQGADRALYNAKALGRNQFA 497


>gi|296446213|ref|ZP_06888160.1| diguanylate cyclase [Methylosinus trichosporium OB3b]
 gi|296256250|gb|EFH03330.1| diguanylate cyclase [Methylosinus trichosporium OB3b]
          Length = 734

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 66/216 (30%), Positives = 98/216 (45%), Gaps = 24/216 (11%)

Query: 69  LSLVIISITISLLLGYISG---------SILKELFISY--NRISQLSRIDCLSGLLNHSA 117
           L +++  +  ++ L Y+ G          + K L +      + Q +  D L+GL N   
Sbjct: 522 LGIIVTLLATTMTLIYLVGKERRLHDGIQMDKRLHLQELARDLGQQAVTDPLTGLFNRLR 581

Query: 118 FISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
              +L         Y + LS+V FD+D+FK IND  GH  GD+ +  L+D    +     
Sbjct: 582 IDQALASEMARAGRYGDPLSLVLFDVDFFKAINDAHGHQAGDRALVRLADAARALVRRSD 641

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            + R GGEEF     GS    A   A  LR  +E             IT S G+ +    
Sbjct: 642 LLARWGGEEFILLTPGSDGAMARNAAEKLRAAVERLSFEDIG----KITCSFGVTQYVDG 697

Query: 231 EPISTIIYRADQALYVAKKSGRNRV--VCFSDIENN 264
           +   T++ RAD+ALY+AK +GRNRV  V  SD  +N
Sbjct: 698 DTAETMVRRADRALYLAKLNGRNRVESVLESDASSN 733


>gi|261250311|ref|ZP_05942887.1| C-di-GMP phosphodiesterase A-related protein [Vibrio orientalis CIP
           102891]
 gi|260939427|gb|EEX95413.1| C-di-GMP phosphodiesterase A-related protein [Vibrio orientalis CIP
           102891]
          Length = 685

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 10/190 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFF 134
           L     ++ K+   +  +++QL+  D L+GL N S  +  L          N+  ++ + 
Sbjct: 222 LAQTFDTLWKDREAAEVQLNQLAYYDSLTGLANRSLMLQMLEDEIIHANKDNQAGALFYL 281

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND+ GH +GD +I  +S ++           R+GG+EFA     +S  +A  
Sbjct: 282 DLDRFKTINDSLGHTIGDHLIKAISMRIEAWLQEEFTAARIGGDEFAILLPHTSVDKAHE 341

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRN 253
           LA  L  +I N          ++ T+S GIA           ++ +AD ALY AK +GRN
Sbjct: 342 LAQQLLALISN--PYSIDDHQLYCTVSVGIAVFPSVGGTNIDVLRQADTALYRAKVAGRN 399

Query: 254 RVVCFSDIEN 263
           + + +     
Sbjct: 400 KYMFYEPEMQ 409


>gi|228988980|ref|ZP_04149011.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228770742|gb|EEM19276.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 782

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 10/200 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           +++V I I       Y+    +  +    + I+ L+  D ++ + N   F   L      
Sbjct: 323 VTIVPIMIEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELNRSIKH 382

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                +K  +++ D++ FK IND  GH +GD+V+  ++++        + + R+GG+EFA
Sbjct: 383 AQKTQDKFGLLYIDLNRFKTINDTLGHSIGDRVLKEVANRFRTCLSPTIPLARIGGDEFA 442

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRA 240
                 +EQ+   L   L +I E  +  I +  S ++++S GIA         +T++  A
Sbjct: 443 IIVHNQTEQQLLDLCETLFRITE--EPFIVNQHSFYLSLSIGIAVYPFGGINTTTLLQHA 500

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D A+Y AKK G N V  + +
Sbjct: 501 DIAMYSAKKKGNNTVCMYDE 520


>gi|166712813|ref|ZP_02244020.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 532

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 78/170 (45%), Gaps = 8/170 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNF 146
                 + + S  D L+GL N      SL             LS++  D+D+FKQ ND+ 
Sbjct: 352 LRLRESLRRQSIRDALTGLYNRRYLEESLSHELARCARRGLPLSVLMLDVDHFKQFNDSQ 411

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD ++A + + L+    T     R GGEEF      +  +EA  +A  +R  I   
Sbjct: 412 GHAGGDLLLAAVGELLLTRLRTEDVACRYGGEEFTVRLPEADGEEALRVAEQIRDYIAAL 471

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
            ++  +     +T   G+A      E  +++I +AD ALY AK  GRNRV
Sbjct: 472 AVSDGARALPKVTALIGVASFPADGEQGASLIQKADAALYRAKHRGRNRV 521


>gi|158334794|ref|YP_001515966.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158305035|gb|ABW26652.1| diguanylate cyclase domain protein [Acaryochloris marina MBIC11017]
          Length = 393

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 57/201 (28%), Positives = 96/201 (47%), Gaps = 12/201 (5%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-- 128
           + I+    +LL+GY+    ++       ++ QL+ ID ++ + N   F +      ++  
Sbjct: 193 ITILFCGFTLLVGYLLMQFVRARQRLLEKVEQLATIDDVTQIANRRHFNAVFAQEWQRML 252

Query: 129 -----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAA 182
                LS++  D+D FK  ND++GH  GD  +  ++  +      P  F  R GGEEF  
Sbjct: 253 REQSCLSLLLCDVDCFKAYNDHYGHQAGDSCLFQIAQTIHNCMRRPSDFAARYGGEEFVI 312

Query: 183 AALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCH--KEPISTIIYR 239
               +    A   A  +++ ++   + +  S  S ++TIS GIA      +     II +
Sbjct: 313 ILPHTQLSGAQAQAQVIQENLQKLALAHAESSISDYVTISIGIASGIPQLELNAHQIIEQ 372

Query: 240 ADQALYVAKKSGRNRVVCFSD 260
           AD+ALY AK  GRNR  CFS+
Sbjct: 373 ADKALYQAKAQGRNR-SCFSE 392


>gi|115376221|ref|ZP_01463463.1| ggdef family protein [Stigmatella aurantiaca DW4/3-1]
 gi|310821744|ref|YP_003954102.1| FHA domain/GGDEF domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|115366794|gb|EAU65787.1| ggdef family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309394816|gb|ADO72275.1| FHA domain/GGDEF domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 292

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 9/168 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           ++ I +L+ +D L+ + N   F   L         Y   LS+V FD+D+FK IND  GH 
Sbjct: 125 HDEIYRLTTMDGLTQVHNRRYFDEQLDREVSRSRRYERVLSLVMFDVDHFKHINDKRGHL 184

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  L+  + V         R GGEEF         +   + A  +R+++E ++  
Sbjct: 185 AGDYVLKHLASTVRVNIRREDVFARYGGEEFGILLPEVDAKGTWLFAEKVRQMVEQARF- 243

Query: 210 ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +    +I +TIS G+A  +      + ++  AD+ LY AK +GRNRV 
Sbjct: 244 VFDKHTIPVTISLGVATLQPEHREPADLVRAADEKLYEAKNTGRNRVC 291


>gi|327395232|dbj|BAK12654.1| transcriptional regulator GntR family YdcR [Pantoea ananatis
           AJ13355]
          Length = 698

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 103/231 (44%), Gaps = 13/231 (5%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRI 100
           F A       G+   +    + V  L+++ I++ +S+L   +      +   L  +   +
Sbjct: 199 FPAGSHSMDAGVNSNWLAMVVTVVTLAILGITLLVSMLDARMQARTSILASSLAEANREL 258

Query: 101 SQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +QL+  D L+ L N       L            + +++F D+D FK +ND FGH +GD 
Sbjct: 259 AQLALHDNLTRLPNRILLEDRLEQAINKANRECSQFALMFMDLDGFKAVNDAFGHHIGDS 318

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  +++++         + RLGG+EF      +   +AA +A+ L K ++  +    S 
Sbjct: 319 LLISVTERMSEQMKGYYTLARLGGDEFVLLIEITEPNDAAAVADQLVKAVD--RPFSISR 376

Query: 214 PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             + +++S GI       E    +++ AD A+Y  K +GRN    F    N
Sbjct: 377 YDLVVSLSIGIVVYPGDGEDERELMFNADAAMYHTKNNGRNGYTFFQPSMN 427


>gi|289668230|ref|ZP_06489305.1| putative sensor protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 356

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 13/173 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           ++      + + +R D L+GL N  AF            +  + LS+   D+D+FK +ND
Sbjct: 188 QMDALNADLVEQTRTDPLTGLPNRRAFAVALAAATEQTRAVGQPLSVALLDVDHFKTVND 247

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD V+  LS  L         + R GGEEF      +   +A +    LR+ + 
Sbjct: 248 VHGHDQGDAVLRELSALLRAHMAGSGTIARYGGEEFVLLLPNTDLLQARVQCEYLRQSVA 307

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              I +       +T+S G+A    +E +  +I RADQALY AK+ GR++VV 
Sbjct: 308 AMTIALP------VTVSIGVATLYPQESVEAVIKRADQALYAAKRGGRDQVVA 354


>gi|17546612|ref|NP_520014.1| hypothetical protein RSc1893 [Ralstonia solanacearum GMI1000]
 gi|17428911|emb|CAD15595.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum GMI1000]
          Length = 533

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 106/242 (43%), Gaps = 14/242 (5%)

Query: 27  FMIYFSIFFSIFIATVIFI---ANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
            ++  S    +F+ +++FI   A      +             E L  +    +  +   
Sbjct: 273 MLVTLSHSIPLFVLSIVFIWWFARSISRPLVELASQARLVATPERLERIKTVSSWYIEAH 332

Query: 84  YISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDID 137
            +  ++L+   ++  R+++L   +  D L+GL N     ++L  +   ++  S V  D+D
Sbjct: 333 RLKRALLRGTRLTSTRMARLNLEALTDPLTGLYNRRGVANALRLHAGRHQPFSAVTLDVD 392

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK+IND  GH VGD+V+  L+  +          GR+GGEEF      ++   A   A 
Sbjct: 393 HFKRINDRHGHDVGDQVLRHLAALIREQARHGDITGRIGGEEFILLLPDATPDGAFRTAE 452

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            LR  +E             +T+S G+A        +  ++  +D ALY AK+ GRNR V
Sbjct: 453 RLRLAVEARPNPAGQ----VVTVSLGVAHYPQSAGEVDAVLKLSDLALYQAKRDGRNRTV 508

Query: 257 CF 258
            +
Sbjct: 509 VY 510


>gi|117920926|ref|YP_870118.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117613258|gb|ABK48712.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 467

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 105/241 (43%), Gaps = 7/241 (2%)

Query: 24  PHTFMIYFSI--FFSIFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISL 80
           P   ++ F +  F+    ++   +  I     G  PF     Y     +   ++S  +++
Sbjct: 226 PLLVVLSFEVTRFYLALFSSASMLFMILATAQGYGPFINATPYQTNAEMMAFVLSSALTI 285

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDID 137
               +  + L+          Q +  D LSGLLN   F+  L + N    + S+   D+D
Sbjct: 286 FGVSLQRAQLRRTERDKQTAVQEALYDPLSGLLNRRGFMPQLTNLNGQTVRYSVAMLDLD 345

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK IND +G  VGD+VI  L+  +     +     RLGGEEFA        ++   +  
Sbjct: 346 NFKMINDTYGDSVGDRVIQLLAQLIHNHSRSQDIAARLGGEEFALVLRDIDAEQVYPVLE 405

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +RK      I  +   +I+ T+S G  E        ++++ AD+ALY AK  G+N +V 
Sbjct: 406 RIRKSFAEMSI-AAEEHTIYCTVSIGWVEYQQGIAGESLLHLADKALYQAKAKGKNTIVK 464

Query: 258 F 258
           +
Sbjct: 465 Y 465


>gi|126442988|ref|YP_001062179.1| GGDEF domain/EAL domain-containing protein [Burkholderia
           pseudomallei 668]
 gi|126222479|gb|ABN85984.1| ggdef domain/eal domain protein [Burkholderia pseudomallei 668]
          Length = 688

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 65/215 (30%), Positives = 101/215 (46%), Gaps = 15/215 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRIS----QLSRIDCLSGLLNHSAFIS 120
           L   ++L  ++I I  L+          L  S +R+S    +++  D L+ L N      
Sbjct: 214 LAATVALFTVAILIVALILSHFDVRTTLLAGSVSRLSGQIVRMAAFDTLTDLPNRRTLNE 273

Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            LG           KL+I+F D+D FK IND+ GHP GD+V+   S +L+        V 
Sbjct: 274 HLGRALAAARARGGKLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVA 333

Query: 174 RLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           RLGG+EF       SS+ EAA +A ++ + +   + N   G ++ +T S GIA      +
Sbjct: 334 RLGGDEFVVLLESVSSDDEAARVARNVLERMRKGRWN--DGQALQVTPSIGIALYPKDGD 391

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              T++  AD A+Y AK+SGR     F    +   
Sbjct: 392 TADTLLRHADAAMYAAKRSGRCTYRFFEATMDEAA 426


>gi|254420292|ref|ZP_05034016.1| GGDEF domain protein [Brevundimonas sp. BAL3]
 gi|196186469|gb|EDX81445.1| GGDEF domain protein [Brevundimonas sp. BAL3]
          Length = 350

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 88/185 (47%), Gaps = 7/185 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           S   +  L     ++ + +  D L+ L N  AF   L           L++   DID+FK
Sbjct: 164 SNKEVARLREHLEQVRRDAMTDALTNLANRKAFDERLEQACADAGRTPLTLAILDIDHFK 223

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           + ND +GH  GD+V+ ++S  L  V     FV R GGEEFA    G S          +R
Sbjct: 224 RFNDTWGHQTGDQVLRYVSTILSRVCSGNRFVARFGGEEFAIIFPGESPGAVMAALEHIR 283

Query: 201 KIIENSQINISSGPS--IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + + +  +   S       +T+SAG AE    E  + ++ RAD+ALY +K+ GRNRV   
Sbjct: 284 EEVSSRSLRRRSTNDDLGAVTLSAGFAEHLPSEGAAALLERADEALYASKRGGRNRVTSA 343

Query: 259 SDIEN 263
             +EN
Sbjct: 344 RALEN 348


>gi|167031415|ref|YP_001666646.1| diguanylate cyclase [Pseudomonas putida GB-1]
 gi|166857903|gb|ABY96310.1| diguanylate cyclase [Pseudomonas putida GB-1]
          Length = 427

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 72/284 (25%), Positives = 122/284 (42%), Gaps = 37/284 (13%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFI------ANIFLFYIG 54
           + +S  + L  WL  E    +     +M    + + +FI   I +      A   L    
Sbjct: 141 LEQSYPEALLTWLA-EIRWPALHGQ-WMSLIQMVYPLFIGVFILLVVQYLRAPRPLHAAL 198

Query: 55  LTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           +T   G+ ++L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL 
Sbjct: 199 ITGLLGIFWMLPQTFILPFTLNIMCSQVMLMIAAAVAHEAY-------QMAFRDELTGLP 251

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A    +        I   D+D+FK+ ND  GH VGD+V+  ++ +L  V G      
Sbjct: 252 GRRALNERMQRLGRNYVIAMTDVDHFKKFNDTHGHDVGDQVLRLVASRLSKVTGGGRAYR 311

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-------------------SSGP 214
             G EEFA    G + +E       +R++I N  +++                   S G 
Sbjct: 312 YGG-EEFALVFAGKTAEECVPHVEAVREVIANYVMHLRDQHNRPQDDTAGRQRRAGSGGG 370

Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++ +TIS G+AER         ++  ADQALY AK +GRN V+ 
Sbjct: 371 TVSVTISIGVAERHADHRNPEAVLKSADQALYSAKGAGRNCVMV 414


>gi|88799370|ref|ZP_01114948.1| diguanylate cyclase (GGDEF domain) [Reinekea sp. MED297]
 gi|88777909|gb|EAR09106.1| diguanylate cyclase (GGDEF domain) [Reinekea sp. MED297]
          Length = 374

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 60/241 (24%), Positives = 108/241 (44%), Gaps = 16/241 (6%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGL--EYILVENLS-LVIISITISLLLGYISGSIL 90
           F    +   I +A I L+Y+    ++ +  E  L++ ++ + ++ + I+L L  +  +  
Sbjct: 132 FILNLMLIAINLALIALYYVHPDLYWSMAPEEQLLDWMANVAVMFVFIALQLSVLERAYE 191

Query: 91  KELFISYN---RISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
           +E   +     R+ +LS  D L+G+ N                      +++  D+D+FK
Sbjct: 192 RERMANQEKTERLERLSHTDPLTGVDNRLHLEQDIDACIVQARQSQTTFAVLIMDLDHFK 251

Query: 141 QINDNFGHPVGDKVIAFLSD-QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           + ND +GH  GD+ +  +    L  V      V R GGEEF      +    A  LA  +
Sbjct: 252 RFNDFYGHLQGDECLKTIGSLLLRTVKRDSDRVYRFGGEEFLVLLPQTDLNAAQALAEQV 311

Query: 200 RKIIENSQINISSGPSIHI-TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           R  I+ + I      S  + T + G+AE        + +I RAD ALY  K++GR++V  
Sbjct: 312 RAQIKAAAIPHEQSLSSTVLTTTIGVAEYDDTITSAAAMIARADTALYEGKRAGRDQVCV 371

Query: 258 F 258
           +
Sbjct: 372 W 372


>gi|120555318|ref|YP_959669.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120325167|gb|ABM19482.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 364

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 109/257 (42%), Gaps = 14/257 (5%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITI 78
           L ++ P  F I  +    I      ++A +FLF       +   Y     LS++I+ +  
Sbjct: 110 LFAYPPIIFYISEA-RVGILAGVGGWLAVLFLFSPLGDMVFDSPYSTSFRLSMIIV-LAF 167

Query: 79  SLLLGYISGSILKE----LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNE 127
            +   YI     +     L          ++ D L+ L N    +  L            
Sbjct: 168 EMATCYILDQSRRRSKLGLIRLAAEFEYAAKHDALTSLANRREGLEQLETEYQRYLRNGR 227

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
             S++  DID FK +ND++GH  GD +I  ++  L         + R GGEEF      +
Sbjct: 228 SFSVLLMDIDLFKNVNDSYGHQAGDDMIVLVARTLTDQSRKVDTIARWGGEEFLVLLPET 287

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
           +  EAA  A  +R  + +  I+  +G  +  TIS G+A     E I  ++ RAD+ALY A
Sbjct: 288 ALTEAAATAERIRSAVASQAIDC-AGKRVTATISIGVACIQGSESIDRLLQRADEALYQA 346

Query: 248 KKSGRNRVVCFSDIENN 264
           K  GRNRV   ++  + 
Sbjct: 347 KTLGRNRVCQATEALHQ 363


>gi|307318092|ref|ZP_07597528.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sinorhizobium meliloti AK83]
 gi|306896133|gb|EFN26883.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sinorhizobium meliloti AK83]
          Length = 1071

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 59/195 (30%), Positives = 90/195 (46%), Gaps = 11/195 (5%)

Query: 78  ISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNE-KLS 130
           IS+    I+     E    ++  +++ ++R D L+GL N   F      +L   N  +++
Sbjct: 622 ISIFCRDITERRRAEEDTLLAQKQMAHMARHDMLTGLANRMFFRECFEEALNESNHARMA 681

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SE 189
           ++  D+D FK +ND  GHP GD ++  +S +L+    T   V RLGG+EFA     + S 
Sbjct: 682 VLCLDLDGFKAVNDTLGHPAGDALLRQVSTRLIQSVRTTETVARLGGDEFAIIQPLTESR 741

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAK 248
            EA  LA  L   +  S+     G +  +  S GIA           +I  AD ALY AK
Sbjct: 742 DEAFRLAQRLIDTL--SEPFSIEGAAATVGTSIGIAFAPEDGTSADELIKAADIALYSAK 799

Query: 249 KSGRNRVVCFSDIEN 263
            SGR     F    +
Sbjct: 800 SSGRGTYKLFDVAMH 814


>gi|304312348|ref|YP_003811946.1| hypothetical protein HDN1F_27200 [gamma proteobacterium HdN1]
 gi|301798081|emb|CBL46303.1| Hypothetical protein HDN1F_27200 [gamma proteobacterium HdN1]
          Length = 613

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 10/177 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           ++L     R++ ++  D L+G+ N   F          L   N  LS++  DIDYFK+ N
Sbjct: 416 EQLKNLNARLALVATTDGLTGIANRRRFDEVLATELVRLRRSNVPLSLMLLDIDYFKRFN 475

Query: 144 DNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD  +  +   L   +      V R GGEEFAA    ++E+ AA LA   R  
Sbjct: 476 DEYGHVAGDDCLRRIGALLASSISRASDTVARYGGEEFAAILPFTNERGAAALAECFRSG 535

Query: 203 IENSQINISSG-PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           IE+  I  +    S  +T+S G+         ++ ++  AD  LY AK+ GRNRVV 
Sbjct: 536 IESLGIPHTGSTVSAFVTVSIGVVTLSAGMGSVAGVVELADAQLYQAKRMGRNRVVA 592


>gi|152990926|ref|YP_001356648.1| hypothetical protein NIS_1182 [Nitratiruptor sp. SB155-2]
 gi|151422787|dbj|BAF70291.1| hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 458

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 76/172 (44%), Gaps = 8/172 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
            +      + Q +  D L+ L N                 YN  LS+V  D+D+FK+IND
Sbjct: 283 RIKKEEAHLFQKAITDGLTKLYNRYYLDKFIESEFEKAKRYNYPLSVVMIDLDFFKRIND 342

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           ++GH VGD V+   ++ L         V R GG+E       +   +A  +   +R ++ 
Sbjct: 343 SYGHEVGDMVLKAFAEFLKKNVRKSDVVFRYGGDELLIVMPFTDLHQARDVMERIRNLLH 402

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
                      I  T SAGIA      +    +I +AD+ALY AKK GR+R+
Sbjct: 403 QKGTLQFGDIKITYTFSAGIATIDENIKDAKELIKKADEALYKAKKLGRDRI 454


>gi|219847766|ref|YP_002462199.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus aggregans DSM 9485]
 gi|219542025|gb|ACL23763.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus aggregans DSM 9485]
          Length = 715

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 92/189 (48%), Gaps = 13/189 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEK 128
           I+ S L+  IS    +        I +    D L+GLLNH A    L          N+ 
Sbjct: 396 ISPSELVAAISARAQRARH-----IRRFLIRDSLTGLLNHQAVEEELAREFARAERLNQP 450

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+I   D+D+FK+IND++GH VGD+V+   +  L         +GR GGEEF  A   +S
Sbjct: 451 LAIAIIDLDHFKRINDSYGHVVGDQVLRSFARLLQQRLRKSDLIGRHGGEEFLIALPNTS 510

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
             EA  L + +R      +    +G    +T+SAGIA          ++  ADQALY AK
Sbjct: 511 LVEARTLIDTVRSSFAALRHYGPAGM-FSVTLSAGIAGYPQHRSQIGMMQAADQALYQAK 569

Query: 249 KSGRNRVVC 257
           + GRNRVV 
Sbjct: 570 REGRNRVVV 578


>gi|332139483|ref|YP_004425221.1| Intracellular signaling protein (GAF,GGDEF,EAL domains)
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549505|gb|AEA96223.1| Intracellular signaling protein (GAF,GGDEF,EAL domains)
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 866

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 82/187 (43%), Gaps = 12/187 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK-LSIVFFDIDYF 139
             ++E      ++   +  D L+ L N + F S L         Y+E   +++F D+D F
Sbjct: 427 QQIEERKEIELKLIHDAHHDSLTDLPNRAMFTSRLELAIASKQRYSENMFAVLFIDLDRF 486

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K IND  GH  GD+ +  ++ ++ +       + RLGG+EF         E +   +A+ 
Sbjct: 487 KVINDTLGHHAGDEFLIEVARRIALCIRGHDLLARLGGDEFVVLLDNFEDEDDVEEVASR 546

Query: 199 LRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   I  S+  +  G  ++   S GIA    +      ++  AD A+Y AK  GR R V 
Sbjct: 547 IISSI--SEPFLLDGREMYSGASVGIAHIETYYRSADEVLRDADAAMYQAKTLGRGRFVM 604

Query: 258 FSDIENN 264
           F     +
Sbjct: 605 FDKSMRD 611


>gi|261855889|ref|YP_003263172.1| diguanylate cyclase [Halothiobacillus neapolitanus c2]
 gi|261836358|gb|ACX96125.1| diguanylate cyclase [Halothiobacillus neapolitanus c2]
          Length = 353

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 9/180 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           +G  +  L        + +R D L+GL N       L               ++  DID+
Sbjct: 159 AGEQITRLKEELEAARRDARTDPLTGLANRRGLNELLLQRINLFLQEKTPFCVILADIDH 218

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND++GH VGDK++ F++  L+        V R GGEEFA     +      I+A  
Sbjct: 219 FKRINDSYGHLVGDKILRFVARTLMANIKGQDSVIRFGGEEFAIVLPYTQYDGGIIVAQH 278

Query: 199 LRKIIENSQINI-SSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           LR+ I +S++ +  SG  +  +TIS G+A     +   +++ RAD AL  AK  GR+RVV
Sbjct: 279 LRQKIASSRLRLAESGRDLGGLTISLGVAAVHTDDTPDSLLRRADDALLKAKAEGRDRVV 338


>gi|209550625|ref|YP_002282542.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209536381|gb|ACI56316.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 287

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 79/249 (31%), Positives = 115/249 (46%), Gaps = 5/249 (2%)

Query: 12  WLCHEKNLESFS----PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE 67
           W+  + +  +F      + F +  S    +    ++ +    L ++GL P      I   
Sbjct: 4   WMSLQADFGNFQYRGNVYVFALKMSFLTVLLSGVIMAVTIPPLGFLGLLPETLSHAIGFG 63

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE 127
            +   ++  T+S +L   +G  L EL +S     +LSR D LSGLLN  AF  +L +   
Sbjct: 64  VIFSWLVGGTVSGMLSLAAGFALHELTLSRAEFEKLSRTDTLSGLLNRRAFTEALENTEG 123

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
             S+V FD+D FK IND FGH  GD VI  +S  L+  F     V RLGGEEF     G 
Sbjct: 124 DASLVIFDVDRFKAINDRFGHGCGDAVITAVSAMLISAFDEMSVVARLGGEEFGVIISGE 183

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
             +        + +         + G  I IT+S G+A+         +   AD+ALY+A
Sbjct: 184 PLEARMERIEGV-RARIAGGAIAAEGHDIRITVSGGVADLAAGRNKQAVYASADRALYLA 242

Query: 248 KKSGRNRVV 256
           K  GRNRVV
Sbjct: 243 KALGRNRVV 251


>gi|170722309|ref|YP_001749997.1| GAF sensor-containing diguanylate cyclase [Pseudomonas putida W619]
 gi|169760312|gb|ACA73628.1| diguanylate cyclase with GAF sensor [Pseudomonas putida W619]
          Length = 345

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 92/174 (52%), Gaps = 8/174 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +  +R  + + +D L+ L N +   +            +++L  ++ D+D+FK IN
Sbjct: 168 RDLRLEMDREQRKAMLDPLTQLWNRNGLTAFQDHERRRAAQSSQRLGAIYADLDHFKSIN 227

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD+V+   + +L         V R GGEEF A  + +  +E   +A  +R++I
Sbjct: 228 DRYGHASGDQVLCECARRLRAALRPDDLVVRQGGEEFVALVMVNDSEELKGIAERVRQMI 287

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +  + +S+GP + +++S G       E +   + RAD  LY AK++GR+RVV 
Sbjct: 288 GSEPVQLSTGP-LRVSLSIGCTLLNDDEHLDQALERADTGLYSAKQNGRDRVVY 340


>gi|56475847|ref|YP_157436.1| response regulator receiver protein [Aromatoleum aromaticum EbN1]
 gi|56311890|emb|CAI06535.1| Response regulator receiver protein [Aromatoleum aromaticum EbN1]
          Length = 638

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 11/182 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           E   +     +L+  D L+G  N  +    L          N++L+++F D+D FK++ND
Sbjct: 173 ERRGAEKLARELALRDTLTGFFNRRSLNDRLARAISVAGHQNDRLALLFLDLDRFKRVND 232

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
           + GH  GD+++  ++ +L         + R GG+EF           +AA +A  +   +
Sbjct: 233 SLGHDKGDELLKQVAARLRCAVREADTLARFGGDEFVVLLENLHDRDDAAQVAIKICAAL 292

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              Q       ++ ++ S G++         S ++  AD A+Y AK+ GRN    + +  
Sbjct: 293 A--QPFELGASTVKVSASVGVSLYPDDGASASVLMKNADLAMYEAKQMGRNGHEFYREEL 350

Query: 263 NN 264
           N 
Sbjct: 351 NR 352


>gi|146278220|ref|YP_001168379.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhodobacter sphaeroides ATCC 17025]
 gi|145556461|gb|ABP71074.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 832

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 58/187 (31%), Positives = 87/187 (46%), Gaps = 12/187 (6%)

Query: 85  ISGSILKELFISYNRIS--QLSRIDCLSGLLNHSAF----ISSLGSY--NEKLSIVFFDI 136
           IS     E      ++    ++R D L+GL N   F      ++ +      +++   D+
Sbjct: 376 ISARRQAEDDRVMAQLQVFHMARHDMLTGLPNRHYFGDCYEEAVAALAGGRSVAVHMLDL 435

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAIL 195
           D FK +ND  GHPVGD+V+  ++D+L     +   V RLGG+EFA       +EQEA  L
Sbjct: 436 DGFKAVNDTRGHPVGDQVLRQVADRLRTSVRSTDTVARLGGDEFAVIQTPVRTEQEACDL 495

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  L   +     NI  G    +  S GIA  R   +    ++  AD ALY AK++GR  
Sbjct: 496 ARRLIAAVSK-PFNI-DGTVPEVGASVGIAFARGRGDSAEEVMRFADVALYAAKQAGRGT 553

Query: 255 VVCFSDI 261
              F + 
Sbjct: 554 FRVFDEA 560


>gi|95930035|ref|ZP_01312775.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
 gi|95134004|gb|EAT15663.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
          Length = 556

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 86/177 (48%), Gaps = 10/177 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            +       ++I   +  D L+ L N   F   L          +   +++F D+D FK+
Sbjct: 374 DITRQKALEDKIWHQAHHDSLTDLPNRVLFYQYLGDVVLHAQRQDIGAALMFVDLDCFKE 433

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLR 200
           +ND+ GH  GD ++  ++ +L         V R+GG+EF      +S+ +A + +A  + 
Sbjct: 434 VNDSLGHDYGDLLLQQVAKRLKDSVRQTDQVARIGGDEFTVLLCHTSDNQAILSVAEKVL 493

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             + N   ++ +G    I+ S GIA  C      T++ +AD A++ AKK+GRN+V+ 
Sbjct: 494 NQL-NRPFDL-NGHQAQISGSIGIARVCKGHTTETLVRQADHAMFAAKKAGRNQVIM 548


>gi|193782686|ref|NP_436089.2| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021]
 gi|193073142|gb|AAK65501.2| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021]
          Length = 1071

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 11/195 (5%)

Query: 78  ISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNE-KLS 130
           IS+    I+     E    ++  +++ ++R D L+GL N   F      +L   N  +++
Sbjct: 622 ISIFCRDITERRRAEEDTLLAQKQMAHMARHDMLTGLANRMFFRECFEEALNESNHARMA 681

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SE 189
           ++  D+D FK +ND  GHP GD ++  +S +L+    T   V RLGG+EFA     + S 
Sbjct: 682 VLCLDLDGFKAVNDTLGHPAGDALLRQVSTRLIQAVRTTETVARLGGDEFAIIQPLTESR 741

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAK 248
            EA  LA  L   +  S+     G + ++  S GIA           +I  AD ALY AK
Sbjct: 742 DEAFRLAQRLIDTL--SEPFSIEGAAANVGTSIGIAFAPEDGTSADELIKAADIALYSAK 799

Query: 249 KSGRNRVVCFSDIEN 263
            SGR     F    +
Sbjct: 800 SSGRGTYKLFDVAMH 814


>gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille]
 gi|151281061|gb|ABR89471.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille]
          Length = 910

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 9/190 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           + S +  +      + +L+  D L+GL N +     L             + +V  D+D 
Sbjct: 458 AMSDITPMKQYETTLHRLASHDVLTGLPNRALLQDRLENAIAYSARNGHAVWVVLVDLDR 517

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND  GH  GD ++  +SD+L         V RLGG+EF        +  +   ++ 
Sbjct: 518 FKFVNDTMGHQAGDVLLKIISDRLQASVRESDTVARLGGDEFVLVLPECGDGPSGYSSDV 577

Query: 199 LRKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
           +++I+E     ++  G    ++ S GIA         +T++  AD A+Y +K+ GRN   
Sbjct: 578 IQRIMEAVVKPLTIQGSEFFLSCSMGIAVYPNDGADPTTLLAHADVAMYRSKELGRNNFQ 637

Query: 257 CFSDIENNTC 266
            ++   N+  
Sbjct: 638 FYTPAMNDQA 647


>gi|170724836|ref|YP_001758862.1| GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella woodyi ATCC 51908]
 gi|169810183|gb|ACA84767.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           woodyi ATCC 51908]
          Length = 874

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 12/181 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--------KLSIVFFDIDYFKQ 141
           + +      ++   +  D L+GL N   F+  L    +        + +++F D+D FK 
Sbjct: 436 IAQRRKMEQQLVHDANHDTLTGLPNRGMFMEKLSQAIKHTRRHKLDRFALLFIDLDRFKL 495

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLR 200
           IND  GH  GD+ +   S +L +       +GR+GG+EF       +  Q+A  +A  + 
Sbjct: 496 INDTLGHIEGDRFLVETSRRLKLCIRENDSLGRIGGDEFVILLDRINGSQDAKEVAERVL 555

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +  S+    +        S GIA   HK +   +++  AD A+Y AK +G+   V F 
Sbjct: 556 TGL--SEPYKLANQQFKSGASIGIAFNQHKTDTSESLLRDADAAMYRAKANGKGCYVIFD 613

Query: 260 D 260
           D
Sbjct: 614 D 614


>gi|260221800|emb|CBA30724.1| Uncharacterized signaling protein PA1727 [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 665

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 18/200 (9%)

Query: 81  LLGYISGSILKELF-------ISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYN 126
           LLG   G + +EL            ++ Q++  D L+GL N S FI        S     
Sbjct: 223 LLGRHLGRVQEELRGLFTQLGNKNAQLQQMAFYDQLTGLPNRSLFIDLVQREMLSAQRNQ 282

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           ++  I F D+D FK +ND+ GH  GD ++  ++ +L  V      V R  G+EF      
Sbjct: 283 QQFGIFFIDLDRFKAVNDSMGHAAGDALLIEVARRLREVLREVDVVCRQSGDEFLVLVRD 342

Query: 187 SSEQEAA-ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
               E+   +A  + + IE     + +   + ++ S GI+      +   T++  AD A+
Sbjct: 343 IEHWESLGEMAQRVLRSIEA--PVVLANAPVKVSASIGISLYPEDGQDFETLVKHADIAV 400

Query: 245 YVAKKSGRNRVVCFSDIENN 264
           Y AK  GR R   F    N+
Sbjct: 401 YQAKTLGRARYSYFHSELNS 420


>gi|291288402|ref|YP_003505218.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885562|gb|ADD69262.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809]
          Length = 516

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 71/251 (28%), Positives = 112/251 (44%), Gaps = 28/251 (11%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYIL------VENLSLVIISITISLLLGYISGSI 89
           ++   ++I +    +  I L  F    ++L      VE    + ++  +S+ L       
Sbjct: 266 NVLKDSIIVLVLSGVLTIILMSFIIDRFVLSELRQKVERFKKIELNNDLSVRLSETGSFE 325

Query: 90  LKELFISYNR-----------ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSI 131
           LKEL ++ NR           I +LS ID L+ + N   F              N  ++I
Sbjct: 326 LKELAVAANRAMDKIENLNKEIVKLSNIDALTQIYNRKFFDEQYIKQYKSSARNNSSIAI 385

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +  DIDYFK  ND  GH  GD  +  ++  +   +        R GGEEF      +   
Sbjct: 386 LMIDIDYFKSYNDAHGHVEGDACLKEVASIIKNSISRPDDIAARYGGEEFIIMLPFTHAD 445

Query: 191 EAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPIST--IIYRADQALYVA 247
            A  +A  +RK I +S+    +   S +ITIS G+A    ++  S+  +I +AD+ALY A
Sbjct: 446 GAIHIAETIRKNIADSKKPHGASQVSEYITISIGVAIEVPEDSSSSINLISKADKALYQA 505

Query: 248 KKSGRNRVVCF 258
           K+ GRNRV  F
Sbjct: 506 KRYGRNRVETF 516


>gi|77918128|ref|YP_355943.1| GGDEF domain-containing protein [Pelobacter carbinolicus DSM 2380]
 gi|77544211|gb|ABA87773.1| FOG: GGDEF domain containing protein [Pelobacter carbinolicus DSM
           2380]
          Length = 426

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 55/212 (25%), Positives = 97/212 (45%), Gaps = 16/212 (7%)

Query: 68  NLSLVIISITISLLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
             S ++++  +S L   I   + K    L  +   +  L+  D L+G+ N    ++    
Sbjct: 207 TFSGIVLAALLSALFSCIYLLVRKGAVRLAKAQEDLRWLATTDPLTGVYNRREVLARTEE 266

Query: 125 YNEK-----------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              +           +S++  D D FK IND +GHPVGD+V+  L+ ++         +G
Sbjct: 267 LLSQWRAGGDRNASFVSVLMVDFDNFKIINDTYGHPVGDRVLQELAARIQSCLEPKDILG 326

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEP 232
           R+GGEEF     G        +A  L + +  +  +      I  +IS G+A  R H   
Sbjct: 327 RMGGEEFLVVLPGVGVSACREIAERLCQAVCGTPFD-PENYRISGSISVGMATMRAHGGS 385

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +  +++ ADQ LYVAK SG+N     +++ ++
Sbjct: 386 VDAMLHDADQGLYVAKNSGKNCASLAAELPSD 417


>gi|307726106|ref|YP_003909319.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1003]
 gi|307586631|gb|ADN60028.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1003]
          Length = 777

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 71/253 (28%), Positives = 113/253 (44%), Gaps = 26/253 (10%)

Query: 23  SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL------------EYILVENLS 70
            P  + +   +   +  A +        F++G   FY              E  +V  + 
Sbjct: 108 QPLLWSLPALVVIPVCAAPLWLTPT--HFFVGSAFFYAAAAGLLLGAPRTAELNIVVWMW 165

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------ 124
           +  I +  +++  +      +  F+  +R++QL+  D L+GL N  AF++          
Sbjct: 166 VAAIGMPTAVVFHFGFYWFRRNHFLLEDRLAQLAATDPLTGLQNRRAFVTQAERRLADVA 225

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
              ++S +F DID FK +ND FGH VGD  +  ++  L+        V R+GGEEFA  +
Sbjct: 226 QGGQVSAIFLDIDNFKSLNDRFGHAVGDLALRQVAQVLLDGTSRTDSVSRIGGEEFAVLS 285

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
                + A  LA  LR  I   +      P  ++T S G+AE    E I  ++ RAD+AL
Sbjct: 286 SN-GLRGALELAEQLRGAIAALER-----PDGNLTASFGVAEHRTGENIMVLLDRADEAL 339

Query: 245 YVAKKSGRNRVVC 257
             AK SGRNRV  
Sbjct: 340 LRAKHSGRNRVCA 352


>gi|168184847|ref|ZP_02619511.1| putative diguanylate cyclase [Clostridium botulinum Bf]
 gi|237793677|ref|YP_002861229.1| putative diguanylate cyclase [Clostridium botulinum Ba4 str. 657]
 gi|182672126|gb|EDT84087.1| putative diguanylate cyclase [Clostridium botulinum Bf]
 gi|229261773|gb|ACQ52806.1| putative diguanylate cyclase [Clostridium botulinum Ba4 str. 657]
          Length = 892

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 10/214 (4%)

Query: 61  LEYILVENLSLVIISITISLLLGYISG--SILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           LE I +E L     ++  S+ + Y +   + + E      +I  L+  D L+GL N    
Sbjct: 427 LEEIYIEELRKWFSAVVYSMEVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKI 486

Query: 119 ISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           I ++        NEK +++F D+D+FK IND  GH VGD V+  +S +  ++      +G
Sbjct: 487 IETINKTISNYANEKFAVLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKHKIG 546

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           RLGG+EF      +S  +A  LA  +   + N  I       + I  S GI+      + 
Sbjct: 547 RLGGDEFIIVQNITSISDAEKLACKICTTL-NHSIKYKED-DLFIGASIGISIYPEDGKD 604

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            ST++  AD A+Y AKK+G  +   +S   N   
Sbjct: 605 TSTLMKNADAAMYAAKKNGGYKYEVYSRSMNERA 638


>gi|148378360|ref|YP_001252901.1| signaling protein [Clostridium botulinum A str. ATCC 3502]
 gi|148287844|emb|CAL81910.1| putative signaling protein [Clostridium botulinum A str. ATCC 3502]
          Length = 895

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 10/214 (4%)

Query: 61  LEYILVENLSLVIISITISLLLGYISG--SILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           LE I +E L     ++  S+ + Y +   + + E      +I  L+  D L+GL N    
Sbjct: 430 LEEIYIEELRKWFSAVVYSMEVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKI 489

Query: 119 ISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           I ++        NEK +++F D+D+FK IND  GH VGD V+  +S +  ++      +G
Sbjct: 490 IETINKTINNYENEKFAVLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKHKIG 549

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           RLGG+EF      +S  +A  LA  +   + N  I       + I  S GI+      + 
Sbjct: 550 RLGGDEFIIVQNITSISDAEKLACKICTTL-NHSIKYKED-DLFIGASIGISIYPEDGKD 607

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            ST++  AD A+Y AKK+G  +   +S   N   
Sbjct: 608 TSTLMKNADAAMYAAKKNGGYKYEVYSRSMNERA 641


>gi|186471644|ref|YP_001862962.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia phymatum
           STM815]
 gi|184197953|gb|ACC75916.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia phymatum
           STM815]
          Length = 635

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDY 138
           Y+    + E     +R+   +  D L+GL N  AF+  L            +I+F D+D 
Sbjct: 443 YLLVQDVTERTALLDRLRHQAFHDALTGLPNRRAFLERLDEACAAGGDGVAAIMFIDLDG 502

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND +GH  GD+V+   + ++         V R  G+EF     G +   AA+    
Sbjct: 503 FKAVNDTYGHQCGDEVLVETARRISRCVRDGDLVARHAGDEFTVLLTGPAIDRAAL--ER 560

Query: 199 LRKII--ENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNR 254
           + + I    SQ       ++ ++ S G+  R     +    ++  AD A+Y AK +G+  
Sbjct: 561 IARAILLTLSQPMTIGAKAVQLSASIGMLPRDQAASLSGEALLRAADAAMYRAKVAGKAG 620

Query: 255 VVCFS 259
           +V   
Sbjct: 621 IVVHE 625


>gi|114775676|ref|ZP_01451244.1| GGDEF family protein [Mariprofundus ferrooxydans PV-1]
 gi|114553787|gb|EAU56168.1| GGDEF family protein [Mariprofundus ferrooxydans PV-1]
          Length = 373

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 9/174 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           + L  +  ++ +LS  D L+GL N    + +L          ++ L+ +  D D+FK +N
Sbjct: 193 RALSEANLQLEKLSLSDVLTGLPNRRHAMRTLAALWDESLQSDKPLACMMVDADHFKVVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD V+  L++ L     +   V RLGG+EF      +       +A  +RK +
Sbjct: 253 DTYGHDAGDLVLCELANTLQKAARSGDIVCRLGGDEFFIICPDTDRDAGLSIAESVRKKV 312

Query: 204 ENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               +    G     ++S G+ A          +I  AD A+Y AK++G+N V 
Sbjct: 313 SELSVPTGDGAWHG-SVSIGLSARSVDMADYEALIKCADLAVYEAKRAGKNCVR 365


>gi|327482606|gb|AEA85916.1| putative sensory box/GGDEF family protein [Pseudomonas stutzeri DSM
           4166]
          Length = 751

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 8/181 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFK 140
           S + +     +   +   +R D L+GL N       L       +    +++F D+D FK
Sbjct: 282 SQTDISARKAAEECLRHAARHDALTGLANRLHLDELLKEVQQRPHGRAAALLFVDLDRFK 341

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
            IND+ GH  GD+V+  ++ +L+        + R GG+EF A     + E +A  +A  +
Sbjct: 342 LINDSLGHGAGDQVLVEVAQRLLRCLRPGDHLARFGGDEFVALLGDLACEADAERVAQRM 401

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++   Q       ++ ++ S GIA           +  AD ALY AK +G+++   F 
Sbjct: 402 --LVALRQPLQLGERTLSVSASIGIAPLQRDGQALNALQAADLALYRAKSAGKDQFALFC 459

Query: 260 D 260
           D
Sbjct: 460 D 460


>gi|299135054|ref|ZP_07028245.1| diguanylate cyclase [Afipia sp. 1NLS2]
 gi|298590031|gb|EFI50235.1| diguanylate cyclase [Afipia sp. 1NLS2]
          Length = 417

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 71/253 (28%), Positives = 118/253 (46%), Gaps = 20/253 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL 69
            +W    K++ S  P    I+  I     +   I + ++ +   G  P +   ++     
Sbjct: 140 ELWRERRKSMRSRWPA---IFVPILHGAVLMLPIVLGDV-MDGPGTNP-HAAIWVAAFAA 194

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSL 122
            LV  +I       +I   ++ E  ++ ++ +  + +D L+GLLN   F       I   
Sbjct: 195 ELVFYAIGTV----FIIFMLVSERTLAIHKTA--ASVDPLTGLLNRRGFGEATARMIERE 248

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                 ++++ FDID+FK +ND +GHPVGD V+   ++  V        +GR+GGEEFAA
Sbjct: 249 AKAGRSITVMIFDIDHFKSVNDTYGHPVGDDVLKVFANVAVGALRITDLLGRVGGEEFAA 308

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
                +  EA + A  +R   E S + I  G  +  T+S G+A       +  ++  AD 
Sbjct: 309 LLP-CAMDEALLAAERVRDAFEQSGVAI-DGAPLATTVSIGVAGGPANTELDVLMASADT 366

Query: 243 ALYVAKKSGRNRV 255
           ALY AK+ GRNRV
Sbjct: 367 ALYRAKRGGRNRV 379


>gi|229523693|ref|ZP_04413098.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|229337274|gb|EEO02291.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
          Length = 353

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 111/258 (43%), Gaps = 29/258 (11%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           IW C       F P  F I+ S  F+   + +  I    + Y          + L +  +
Sbjct: 98  IWSC-------FVPILFYIFTSARFAFGTSCLFLIIQSNIIY----------WQLQQTGA 140

Query: 71  LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAF---ISSL 122
            +  S+ +     YI   ++  ++    R     +  L+  D L+G  N  +        
Sbjct: 141 AISWSVLLHFCFAYIGIWVVAHVYEDNRRKIENSLLYLASRDPLTGAHNRLSLTTSFQHF 200

Query: 123 GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
             +N++  L ++  D+D+FK IND FGH  GDKV+   +     V G    + R+GGEEF
Sbjct: 201 ERFNDQTSLCLLVIDLDFFKSINDQFGHDTGDKVLIETTRLFAQVVGDNN-LYRIGGEEF 259

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                  S ++A  +   LR I+            + +TIS G+ E    + ++ ++  A
Sbjct: 260 CVTLFDQSLEQAGRVCERLRAIVSQHLFAFGE-KRVQVTISIGVCEYQAGDQLNDLLKFA 318

Query: 241 DQALYVAKKSGRNRVVCF 258
           D  LY AKK+GRN+V  F
Sbjct: 319 DMELYRAKKAGRNQVRLF 336


>gi|221126307|ref|XP_002165456.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 487

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 18/200 (9%)

Query: 81  LLGYISGSILKELF-------ISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYN 126
           LLG   G + +EL            ++ Q++  D L+GL N S FI        S     
Sbjct: 45  LLGRHLGRVQEELRGLFTQLGNKNAQLQQMAFYDQLTGLPNRSLFIDLVQREMLSAQRNQ 104

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           ++  I F D+D FK +ND+ GH  GD ++  ++ +L  V      V R  G+EF      
Sbjct: 105 QQFGIFFIDLDRFKAVNDSMGHAAGDALLIEVARRLREVLREVDVVCRQSGDEFLVLVRD 164

Query: 187 SSEQEAA-ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
               E+   +A  + + IE     + +   + ++ S GI+      +   T++  AD A+
Sbjct: 165 IEHWESLGEMAQRVLRSIEA--PVVLANAPVKVSASIGISLYPEDGQDFETLVKHADIAV 222

Query: 245 YVAKKSGRNRVVCFSDIENN 264
           Y AK  GR R   F    N+
Sbjct: 223 YQAKTLGRARYSYFHSELNS 242


>gi|218532290|ref|YP_002423106.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           chloromethanicum CM4]
 gi|218524593|gb|ACK85178.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           chloromethanicum CM4]
          Length = 563

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 19/178 (10%)

Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+R + L+GL N       L             L+++  D+D FK +ND  GHPVGD ++
Sbjct: 123 LARQEPLTGLCNRVGLHDRLDAALTEAARTGAPLAVLMLDLDRFKTVNDTLGHPVGDALL 182

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALG---------SSEQEAAILANDLRKIIENS 206
             ++++L     +   V RLGG+EFA   +               A  LA  L  ++  +
Sbjct: 183 RKVAERLRRATRSGDLVARLGGDEFAILQVDPQVGPHAGVEQPHAAEALARRLVDLVGRT 242

Query: 207 QINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
              +  G  +++ +S G+A      +    ++  AD ALY AK +GR     F    N
Sbjct: 243 --YVVDGHMLNVGVSVGVAIAPADGQNADDLLKHADLALYRAKAAGRGTYRFFEPAMN 298


>gi|157960295|ref|YP_001500329.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella pealeana ATCC 700345]
 gi|157845295|gb|ABV85794.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella pealeana ATCC 700345]
          Length = 696

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 83/191 (43%), Gaps = 11/191 (5%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFD 135
             IS     E   +   I   +  D L+ L N           + +     + ++++F D
Sbjct: 231 AVISFYDNSERLEAEALIRHQAHYDTLTELPNRFLALKRLEQLVEASERSGQMIAVIFLD 290

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAI 194
           +D FK+IND+ GH  GD+++   S +L+    +   VGRLGG+EF     G SS  +A  
Sbjct: 291 LDDFKKINDSLGHEAGDQLLISASKRLLNATRSEDTVGRLGGDEFIILLDGLSSASDAQP 350

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           LA +L       +        + +T S GIA      E  S ++  AD A+Y  K  GRN
Sbjct: 351 LAENLIGGFR--KPFYIDNRQLVLTASIGIAIYPNDGETSSELLRNADSAMYHTKSIGRN 408

Query: 254 RVVCFSDIENN 264
               F+   N 
Sbjct: 409 TYSYFTHAMNK 419


>gi|330466213|ref|YP_004403956.1| diguanylate cyclase/phosphodiesterase [Verrucosispora maris
           AB-18-032]
 gi|328809184|gb|AEB43356.1| diguanylate cyclase/phosphodiesterase [Verrucosispora maris
           AB-18-032]
          Length = 775

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 97/227 (42%), Gaps = 12/227 (5%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIIS-ITISLLLGYISGSILKELFI 95
           + +A +   A   L   G     G+    VE  +LV    +T+  +  Y      + L  
Sbjct: 242 VPMAAMAGSAMYHLLQDGRFDALGIVAGSVEGFALVARQHLTLHQVRAYA-----RRLAE 296

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
                 QL+  D L+GL N    + +L    + +    ++  D+D FK +ND  GH VGD
Sbjct: 297 REAHFRQLAHTDALTGLANRRGLLRALHGCAAADTPCMLLSLDLDGFKNVNDMRGHDVGD 356

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  +  +L           RLGG+EFA    G    EA  +A  L K++         
Sbjct: 357 AVLVEVGQRLRANLRPGDLAARLGGDEFAVLMHG-GPAEAGAVAERLLKVL-GGAYPQPE 414

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           GP +  ++S G+A       +  ++  AD AL  AK+ G+NR+  + 
Sbjct: 415 GP-VFCSVSIGLATWADTPDVELLLRHADLALRYAKQRGKNRIERYD 460


>gi|325519433|gb|EGC98831.1| RNase II stability modulator [Burkholderia sp. TJI49]
          Length = 667

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 93/192 (48%), Gaps = 19/192 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK--LSIVFFDID 137
           SG  + E   +  R+ +L+  D L+GL N  A    +       S ++   + I+F D+D
Sbjct: 218 SGIDITEERNAQQRLIELANTDVLTGLPNRHAISERIHAVIAEQSRDKPGQIGILFLDLD 277

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAA 193
            FK++ND++GH  GD+++  +S  +     +   + RLGG+EF       +    E  A 
Sbjct: 278 NFKRVNDHYGHITGDRLLQDVSAIISGCLPSGATLARLGGDEFLVLFENGTRALLEATAQ 337

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
           I+   LR  I    +       ++ + S GIA    H + + T+I  AD A+YVAK++G+
Sbjct: 338 IILERLRTPIHLGLM------EVYTSCSIGIAMHPQHGDSLETLIRNADTAMYVAKEAGK 391

Query: 253 NRVVCFSDIENN 264
           +    FS   N 
Sbjct: 392 HTYRVFSLEMNQ 403


>gi|300312320|ref|YP_003776412.1| response regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300075105|gb|ADJ64504.1| response regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 341

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 60/195 (30%), Positives = 97/195 (49%), Gaps = 15/195 (7%)

Query: 78  ISLLLGYISGSILKE----LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----- 128
           I+LL    + S L+E    L  S   + +L+  D L+G+ N   F   LG+   +     
Sbjct: 144 INLLQRDAAYSALRESQQQLQKSNFELQRLTNTDGLTGIANRRYFDDYLGAEWRRARRDG 203

Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAAL 185
             L+++  D+D+FK  NDN+GH  GD V+  +++ L   +        R GGEEFA    
Sbjct: 204 LDLALLLIDVDFFKLYNDNYGHVAGDAVLRQVAEALDSSIQRPADLSARFGGEEFAMILP 263

Query: 186 GSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAE--RCHKEPISTIIYRADQ 242
            +    A  +A  +  ++E+ Q+    S  S  +T+S G A      ++ +  +I  AD+
Sbjct: 264 RTGLDGAHAIAQKVCHLVESLQVPHEGSSVSAWLTVSVGAATLVPQEQQELRELIEAADR 323

Query: 243 ALYVAKKSGRNRVVC 257
            LY+AK+ GRNRVV 
Sbjct: 324 RLYLAKQQGRNRVVW 338


>gi|261883761|ref|ZP_06007800.1| GAF/GGDEF domain protein [Campylobacter fetus subsp. venerealis
           str. Azul-94]
          Length = 184

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 9/173 (5%)

Query: 96  SYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS----IVFFDIDYFKQINDNFGH 148
           S  R++     D L+   N       ++   S  + LS    ++  D+D FK +ND +GH
Sbjct: 9   SQKRLASQPMHDALTQFPNRRYIGKLLTQKKSARDGLSRDGFLLLIDLDDFKPVNDTYGH 68

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILANDLRKIIENSQ 207
             GD+V+  ++ +L+ +      V R+GG+EF      G+S+++  I+A+ + + +    
Sbjct: 69  LTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTSKEQTDIIASRIIREVSK-P 127

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           I +S    + +  S GI           I   AD+A+Y AK  G+NR   F +
Sbjct: 128 IEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAKSKGKNRFEYFEE 180


>gi|238063226|ref|ZP_04607935.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
 gi|237885037|gb|EEP73865.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
          Length = 790

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 10/226 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96
           + +  +   A   L   G     G+    VE  +LV       L L  +    ++ L   
Sbjct: 236 VPMGAMAASAMYHLLQGGRFDALGIVAGSVEGFALVARQ---YLALHDVRRYAVR-LAER 291

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
                +L+  D L+GL N    + +L       +   ++  D+D FK +ND  GH VGD+
Sbjct: 292 EAHFRELAHTDPLTGLANRRGLLRALHQATGSGDPCVLLGLDLDGFKNVNDMRGHDVGDE 351

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+A +  +L           RLGG+EFA    G    +A  +A  L  ++   +     G
Sbjct: 352 VLAEVGRRLRGNLRPGDLAARLGGDEFAVLVPGC-PADAGRVAERLLGVL--GRPYDQPG 408

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             + +++S G+A +  +     ++  AD AL  AK+ G+NR+  + 
Sbjct: 409 GPVFLSVSIGVAGQPEEPDTELLLRHADLALRYAKQRGKNRIEHYD 454


>gi|307153836|ref|YP_003889220.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
 gi|306984064|gb|ADN15945.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
          Length = 472

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 91/184 (49%), Gaps = 11/184 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           I+   + +  +    + +L+R+D L+G+ N   F  +L           E LS++  D+D
Sbjct: 278 ITVRDITQRKLMELELQRLARVDGLTGVANRLCFDETLAKEWQRCRREQEPLSLILCDVD 337

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           YFK+ ND +GH  GD+ +  ++  +   V      V R GGEEF      ++ + A  +A
Sbjct: 338 YFKKYNDTYGHLKGDECLIEIAKAISRAVKRPTDLVARYGGEEFVIILGNTATEGAITVA 397

Query: 197 NDLRKIIENSQINISSGPSI-HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRN 253
             +++ ++  +I   +     +IT+S G+A      K     +I  AD+ALY AK+ GR+
Sbjct: 398 KVIQEKVQQLKIPHQTAKDKNYITLSIGVASVIPYPKLSPKILIASADRALYEAKEQGRD 457

Query: 254 RVVC 257
            ++ 
Sbjct: 458 CLII 461


>gi|188996703|ref|YP_001930954.1| diguanylate cyclase with PAS/PAC sensor [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931770|gb|ACD66400.1| diguanylate cyclase with PAS/PAC sensor [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 675

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 77/164 (46%), Gaps = 9/164 (5%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +LS  D L+GL N    +  +           + LSIV  D+D FK+IND  GH  GD 
Sbjct: 511 KELSIRDPLTGLYNRRFALEFMNKEIEKSKRNGKPLSIVMIDLDDFKKINDIHGHSAGDN 570

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++   SD L           R GGEEF      +S+ +   +   +R   + + + I S 
Sbjct: 571 ILKIFSDVLKKELRKSDISCRWGGEEFLLILPETSKDKTLDVIERIRMTFQLNTMGIVSS 630

Query: 214 PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
              ++T S GIA      + I  II  AD  LYVAK+ G+NRVV
Sbjct: 631 RP-YLTASMGIASYPEDSDNIDEIIKIADDRLYVAKREGKNRVV 673


>gi|153212472|ref|ZP_01948241.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|124116509|gb|EAY35329.1| GGDEF family protein [Vibrio cholerae 1587]
          Length = 469

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 107/214 (50%), Gaps = 4/214 (1%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            I   ++ +   Y    + +    L++  +  +L L        ++L  +  ++S L++ 
Sbjct: 253 RILSRWVHIETIYPRYLMPILASGLLLSIVIYTLQLRRTVRLRTQQLEEANQKLSYLAKT 312

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+G+ N  +F   L +   +   L+++ FDID FK IND FGH  GD  I F+   + 
Sbjct: 313 DSLTGIANRRSFFEYLEAEQTRSGSLTLMVFDIDDFKTINDRFGHGAGDNAICFVVGCVR 372

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
               +  +  R+GGEEFA  A G + +E+  LA  + + +   +  +++  S+ +TIS G
Sbjct: 373 QALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKKWVVNAQYSLSLTISLG 432

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            A   H     ++ + AD  +Y  K++G+N+VV 
Sbjct: 433 CAFYLHPARPFSL-HDADSLMYEGKRNGKNQVVF 465


>gi|71282021|ref|YP_267299.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71147761|gb|AAZ28234.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 613

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 69/219 (31%), Positives = 99/219 (45%), Gaps = 12/219 (5%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L     L  I V N+ L+I   T+  L+  +       L+ S+ R+  LS  D L+G+ N
Sbjct: 387 LAAEQALSNIKVANIQLII---TVMTLIIIMLIIWGARLWRSHKRVKALSEYDELTGIYN 443

Query: 115 HSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
              F       +    S  + LS++ FD+D FK+INDNFGH  GD  +         +  
Sbjct: 444 RRHFTQIAVSTLKYCQSAEQDLSLIMFDLDNFKKINDNFGHICGDWALKETIRVCETIGR 503

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
                 RLGGEEF       + + A + A   R  IEN+ I   SG    IT S G+ + 
Sbjct: 504 KNDIFSRLGGEEFCILLPSCNIEVAVLRAESCRAAIENT-ITEESGNDFSITASFGVTDV 562

Query: 228 C-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                 +  ++  AD A Y +K +GRNRV  F   E+ T
Sbjct: 563 ARSGYNLEKLLIDADFAAYESKHAGRNRVTVFEPQEDET 601


>gi|226941282|ref|YP_002796356.1| hypothetical protein LHK_02365 [Laribacter hongkongensis HLHK9]
 gi|226716209|gb|ACO75347.1| Predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Laribacter hongkongensis
           HLHK9]
          Length = 1092

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 9/166 (5%)

Query: 106 IDCLSGLLNHSAFISSLG----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
            D L+GL N S     L           +++F D+D FK IND+ GH +GD V+  ++ +
Sbjct: 664 FDPLTGLPNRSLLFDRLQEVLNREPHNGAVLFCDLDRFKNINDSLGHTLGDAVLKEVARR 723

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITI 220
           LV        V R GG+EF     G S+      LA  L   +  S   +  G  + +T 
Sbjct: 724 LVARVRPGDTVCRYGGDEFVLVLPGLSDCVVLEQLAEQLLADV--SSPILLDGLDLRVTP 781

Query: 221 SAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS-DIENN 264
           S G+A           ++  AD ALY AK  GRN    F+ +I++ 
Sbjct: 782 SLGVAVFPRDGNDCDALLRHADAALYHAKSRGRNTYRFFTREIDDR 827


>gi|254255450|ref|ZP_04948766.1| hypothetical protein BDAG_04793 [Burkholderia dolosa AUO158]
 gi|124901187|gb|EAY71937.1| hypothetical protein BDAG_04793 [Burkholderia dolosa AUO158]
          Length = 514

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 11/184 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFD 135
           ++    L++       ++ L+R D L+GL N  A  + L     +L        S++F D
Sbjct: 312 WLLAFALRDNLRKQRLLTDLTRTDPLTGLHNRRALDAVLADEWARLRRGSSGSLSVLFID 371

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
            D FKQ ND +GH  GD  + F+++ +            R GGEEF A    +  + AA 
Sbjct: 372 ADRFKQYNDRYGHAQGDTALRFVAECIRAHTRRRGDVAARYGGEEFVAVLPDTDARGAAK 431

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGR 252
           +A  +R+ +  +++          T+S G A      P  +  +  +AD+ALY+AK  GR
Sbjct: 432 VAEAIRREVARNRLAGFPDAVPPFTVSIGCATGDAARPSSVDALTRQADRALYMAKHRGR 491

Query: 253 NRVV 256
           NRV 
Sbjct: 492 NRVC 495


>gi|304438520|ref|ZP_07398460.1| diguanylate cyclase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304368603|gb|EFM22288.1| diguanylate cyclase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 600

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 64/233 (27%), Positives = 105/233 (45%), Gaps = 27/233 (11%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL-----LGYISGSILKE 92
            I  + F   ++      TPF       +  +S  II + +        L   S ++  E
Sbjct: 344 IIDALAFQYRLYEAQTSFTPFS------IYTISFFIIQLILDRAESERRLMERSNTLEGE 397

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           +     R+     ID L+G+ N + F S++  +        E LS+V FDID+FK IND 
Sbjct: 398 VQAVKKRME----IDPLTGVYNRNRFPSAMRDFTKIARDTGEPLSLVMFDIDHFKSINDT 453

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD+V+   +  +         + R GGEEF    L     +A   AN +R+ +  
Sbjct: 454 YGHDAGDEVLFGFAQTIRSFLDRRHILIRWGGEEFILLCLHYDGAKAQAFANQIREGVAK 513

Query: 206 SQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +++  +      +T S GI       +  + ++ RAD ALY +K+ GRNR+ C
Sbjct: 514 ARLLTAQ----QVTCSGGIGVWHGPDDDAAALVKRADTALYASKEGGRNRISC 562


>gi|322418618|ref|YP_004197841.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M18]
 gi|320125005|gb|ADW12565.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M18]
          Length = 338

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 83/185 (44%), Gaps = 10/185 (5%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFD 135
           G +   +  EL      +  L+  D L+G+ N   F       I         LS++  D
Sbjct: 146 GDLLEQLTSELAGKNRELEVLAHKDGLTGIANRRHFNEVLLSEIQRAVRNGRNLSLILCD 205

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           ID+FK+ ND +GH  GDK +  + + L   F      V R GGEEFA     +S + A  
Sbjct: 206 IDHFKKFNDLYGHLAGDKCLQLVGELLRNSFKRAGEVVARYGGEEFAVILPDTSAELAGH 265

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGR 252
           LA  LR  +    +  +      +T+S G+A         +   I  ADQALY +K++GR
Sbjct: 266 LAERLRLELMGQSLLHAHSEHKVVTMSIGVAGGLAKWGRDMEWYITTADQALYRSKEAGR 325

Query: 253 NRVVC 257
           NR+  
Sbjct: 326 NRITV 330


>gi|226358252|ref|YP_002787991.1| diguanylate-cyclase; membrane protein [Deinococcus deserti VCD115]
 gi|226319895|gb|ACO47889.1| putative diguanylate-cyclase; putative membrane protein
           [Deinococcus deserti VCD115]
          Length = 378

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 113/248 (45%), Gaps = 20/248 (8%)

Query: 29  IYFSIFFSIFIATVIFIANIF-LFYIGLTPFYGL-------EYILVENLSLVIISITISL 80
           IY   FF+  +        +F L  + ++  YG+         +L   + L + + T+ +
Sbjct: 123 IYLLAFFTTRLDRARLTGRLFVLLLVAISAGYGIIKSPDSDPSVLNALVQLNLANCTLFV 182

Query: 81  LLGYI---SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIV 132
           L G +   +   ++ +  + N +  L  +D L+GL N      +L            S++
Sbjct: 183 LSGIVYRFANQHVRTVAHAQN-LEHLVYVDALTGLPNRRQLERTLEEATHISNTTGFSLL 241

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D FK IND  GH  GD V+  ++ +L         V R+ G+EFAA  L S E EA
Sbjct: 242 SIDLDGFKSINDTLGHEGGDLVLREVASRLRDACRARDVVVRVSGDEFAAVLLDSREPEA 301

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
            ++A    + +E  Q  I +G  + I+ S G++          T++  AD+A+Y  K++G
Sbjct: 302 RLVAMRFLESLE--QPLIIAGHPVQISASVGVSMFPEDGMDAPTLLRHADRAMYHVKQNG 359

Query: 252 RNRVVCFS 259
           +  V  F+
Sbjct: 360 KQAVHFFA 367


>gi|158338089|ref|YP_001519265.1| response regulator receiver modulated diguanylate cyclase protein
           [Acaryochloris marina MBIC11017]
 gi|158308330|gb|ABW29947.1| response regulator receiver modulated diguanylate cyclase protein,
           putative [Acaryochloris marina MBIC11017]
          Length = 330

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 11/183 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDID 137
           I   +  EL ++ +++ ++S ID L+ + N   F S        +    + LS++  D+D
Sbjct: 141 ILEKLSNELKVANHKLEKISAIDSLTHINNRRRFDSIFLAEWIRMMRERQPLSLILCDVD 200

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           +FK  ND +GHP GDK +  ++  +  V   +   V R GGEEF      + +  A  +A
Sbjct: 201 HFKAYNDTYGHPAGDKCLQQVARAISTVAKRSADCVARYGGEEFVVVLPNTDQSGAVHVA 260

Query: 197 NDLRKIIENSQINI-SSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRN 253
             +R  IE   I   SS  S ++++S G+A     + I  S +I   DQALY+AKK GRN
Sbjct: 261 EAIRTEIEALSIPHCSSTVSQYVSLSLGVASIIPSKAIAPSQLIELTDQALYMAKKRGRN 320

Query: 254 RVV 256
           R  
Sbjct: 321 RTH 323


>gi|30249141|ref|NP_841211.1| hypothetical protein NE1154 [Nitrosomonas europaea ATCC 19718]
 gi|30180460|emb|CAD85065.1| Domain of unknown function, DUF9:HAMP domain [Nitrosomonas europaea
           ATCC 19718]
          Length = 555

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 68/254 (26%), Positives = 108/254 (42%), Gaps = 32/254 (12%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL---------LLGYI 85
           F  F+A +I I  +   Y+G +    L+ ++     +V  ++ I L          L  I
Sbjct: 295 FLEFVAILIVIVTLVALYMGHSIVTPLKQLISAVRGIVEGNLDIYLPVKRKDEVGQLTTI 354

Query: 86  SGSILKELFISYNRI--------------SQLSRIDCLSGLLNHSAF-------ISSLGS 124
              +   L   +  I               +LS  D L+ L N +         ++    
Sbjct: 355 FNQMTDALRNKHTEIMAVNQAMQQQNQLLQKLSITDGLTSLYNRAKLNTILIEQLARFKR 414

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
            +    ++  D+D+FK IND  GH  GDK++  ++  L+    T  +  R GG+EF A  
Sbjct: 415 NDRTFCLLMIDVDHFKTINDKLGHITGDKILITVASALLKSIRTIDYAARYGGDEFMAIL 474

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQA 243
             ++   A   A  +R  +  +   +   P I IT+S GI +  H +     +I RAD A
Sbjct: 475 TETNSSAAIKTAERIRSEVSAACSALEEHP-IQITLSIGITQSHHDDTTPGDLIARADVA 533

Query: 244 LYVAKKSGRNRVVC 257
           LY AKK GRNRV C
Sbjct: 534 LYEAKKRGRNRVYC 547


>gi|323497254|ref|ZP_08102274.1| sensory box/GGDEF family protein-like protein [Vibrio sinaloensis
           DSM 21326]
 gi|323317829|gb|EGA70820.1| sensory box/GGDEF family protein-like protein [Vibrio sinaloensis
           DSM 21326]
          Length = 633

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 62/192 (32%), Positives = 92/192 (47%), Gaps = 19/192 (9%)

Query: 84  YISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVF 133
           Y++  I +       +R+  LS  D L+ L N   F + + +          +E+ S+  
Sbjct: 449 YVASFIDISHRKELEDRLRDLSEKDPLTSLWNRRKFDAEMSAQTLRIKRYPTSEQASLAI 508

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK++ND FGH  GD+VI  ++  L         + R+GGEEFA     +   EA 
Sbjct: 509 LDIDHFKRVNDKFGHDKGDQVIRAVAVVLGEHLRETDVIARIGGEEFAIIMPHTPLNEAE 568

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           I+ N LR  I            + ITISAG+ + C     S    RAD ALY +K  GRN
Sbjct: 569 IVVNRLRTAIHIES-------ELGITISAGVTDICEDPSAS--YKRADIALYESKTLGRN 619

Query: 254 RVVCFSDIENNT 265
           +V   +  EN++
Sbjct: 620 QVNILTTSENSS 631


>gi|311104033|ref|YP_003976886.1| diguanylate cyclase [Achromobacter xylosoxidans A8]
 gi|310758722|gb|ADP14171.1| diguanylate cyclase, GGDEF domain protein 2 [Achromobacter
           xylosoxidans A8]
          Length = 578

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           E       ++ L+  D L+GLLN  AF +   +         + L+++ FDID+FK+IND
Sbjct: 399 ERERLIADLAALAETDFLTGLLNRRAFHARAEALCASLDEPGQMLTLIVFDIDHFKRIND 458

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           ++GH  GD V+  ++      +     V R+GGEEFA      S  +A+ +A  +R+ +E
Sbjct: 459 SYGHAGGDNVLVAVAQACHQTWRRSDIVARIGGEEFAVLCTVRSTAQASAMAQSMRRRVE 518

Query: 205 NSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFSD 260
              + +       IT S G+      E   I  ++ +AD+ LY AK SGRN V+  S+
Sbjct: 519 RLSVPLDGKTIESITSSFGVVCAPADEIHDIDALLKQADELLYRAKASGRNCVITQSE 576


>gi|255320754|ref|ZP_05361929.1| diguanylate cyclase [Acinetobacter radioresistens SK82]
 gi|262379470|ref|ZP_06072626.1| diguanylate cyclase [Acinetobacter radioresistens SH164]
 gi|255302131|gb|EET81373.1| diguanylate cyclase [Acinetobacter radioresistens SK82]
 gi|262298927|gb|EEY86840.1| diguanylate cyclase [Acinetobacter radioresistens SH164]
          Length = 524

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 79/166 (47%), Gaps = 11/166 (6%)

Query: 98  NRISQLSRI---DCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            +IS+++     D L+GL N      FI  +   +   SI+  D+DYFK+IND +GH  G
Sbjct: 361 KKISEMNHHVNSDPLTGLYNRRGIDIFIKEMVDNHTPFSILLIDVDYFKKINDTYGHIQG 420

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++  L   F       R GGEEFA       ++     A  LRK IE++  N+S
Sbjct: 421 DIVLKQIAGHLRTNFRKDDICCRCGGEEFAVLMPTIDKKAVYNSAERLRKKIESNITNLS 480

Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
                 +TIS GIA           +   AD  LY AK+ GRN V 
Sbjct: 481 G----PVTISIGIAYWPESSKSTEEVFKIADHYLYQAKREGRNCVR 522


>gi|313682625|ref|YP_004060363.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM
           16994]
 gi|313155485|gb|ADR34163.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM
           16994]
          Length = 520

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 11/179 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNH----SAF---ISSLGSYNEKLSIVFFDIDY 138
           +G  +    +  N +++ +  D ++G  N                  N  ++++ FDID 
Sbjct: 344 TGKDITSRILFENELAKAAATDPMTGAANRLQCNRWLKSATDHARQSNSSVALIMFDIDD 403

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND FGH  GD V+   ++ +  V  +     R GGEEF    + +  +    LA  
Sbjct: 404 FKHVNDTFGHNAGDAVLINTAEIVHSVIRSHDMFARWGGEEFVILQINTPYEGTIALAER 463

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           LR  IE +Q         HITIS G+A+   +E I T + +AD A+Y AKK G+NRV  
Sbjct: 464 LRTKIEQTQFQNIG----HITISLGVAQFDKEESIETFVKKADDAMYQAKKEGKNRVSV 518


>gi|300718391|ref|YP_003743194.1| Diguanylate cyclase (GGDEF domain) [Erwinia billingiae Eb661]
 gi|299064227|emb|CAX61347.1| Diguanylate cyclase (GGDEF domain) [Erwinia billingiae Eb661]
          Length = 710

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 61/273 (22%), Positives = 113/273 (41%), Gaps = 21/273 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFY--------IGLTPFYGL 61
           ++WL  +               +      IA + +       +        +G+   +  
Sbjct: 156 ALWLAFKLRQGGGRLALMRAGAATVMGFAIAGMHYTGMAAASFPMHSHATEMGVNSNWLA 215

Query: 62  EYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
             ++V  LS++ I++ +S L   +      +   L  +   ++QL+  D L+ L N    
Sbjct: 216 VLVVVVTLSILGITLVVSTLDARLQARTSVLASSLADANRELAQLALHDNLTRLPNRILL 275

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L          N   +++F D+D FK +ND FGH +GD ++  ++D++  +      
Sbjct: 276 EDRLDQAMNKAVRENTSFALMFMDLDGFKAVNDAFGHHIGDNLLVAVTDRMNHLLKGHHT 335

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
           + RLGG+EF      +   +AA  A+ L K I+  Q    S   + +++S GIA      
Sbjct: 336 LARLGGDEFVLLVEINDPNDAATTADMLVKAID--QPFEISRYELMVSLSIGIAVFPGDG 393

Query: 232 PIS-TIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                +++ AD A+Y  K +GRN    F    N
Sbjct: 394 NDERELMFNADAAMYHTKNNGRNGYTFFQPSMN 426


>gi|281412634|ref|YP_003346713.1| diguanylate cyclase [Thermotoga naphthophila RKU-10]
 gi|281373737|gb|ADA67299.1| diguanylate cyclase [Thermotoga naphthophila RKU-10]
          Length = 1083

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 71/182 (39%), Positives = 93/182 (51%), Gaps = 17/182 (9%)

Query: 82   LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
             G I  +IL+E           S  D L+G+L+   F+  L         Y   LSI+  
Sbjct: 902  FGNILTTILRERL-----YRDRSMKDPLTGVLSRWYFMERLEEEAYKSSRYKSPLSIIMC 956

Query: 135  DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
            D D FK+IND FGH  GDK + +L  ++  V      VGR GGEEF  A  G+S +EA I
Sbjct: 957  DADDFKKINDQFGHVAGDKTLNWLGRKIRSVLRKSDLVGRYGGEEFIIALPGTSLEEARI 1016

Query: 195  LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             A  LRK +     NI      H+T+S G+AE  + E     I RAD+ALY+AK  G+N 
Sbjct: 1017 AAEKLRKAVMEDPENI-----YHVTLSFGVAEYKNGEDPFETIKRADEALYLAKTLGKNS 1071

Query: 255  VV 256
            VV
Sbjct: 1072 VV 1073


>gi|229513275|ref|ZP_04402740.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae TMA 21]
 gi|229349685|gb|EEO14640.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae TMA 21]
          Length = 469

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 107/214 (50%), Gaps = 4/214 (1%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            I   ++ +   Y    + +    L++  +  +L L        ++L  +  ++S L++ 
Sbjct: 253 RILSRWVHIETIYPRYLMPILASGLLLSIVIYTLQLRRTVRLRTQQLEEANQKLSYLAKT 312

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+G+ N  +F   L +   +   L+++ FDID FK IND FGH  GD  I F+   + 
Sbjct: 313 DSLTGIANRRSFFEYLEAEQTRSGSLTLMVFDIDDFKTINDRFGHGAGDNAICFVVGCVR 372

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
               +  +  R+GGEEFA  A G + +E+  LA  + + +   +  +++  S+ +TIS G
Sbjct: 373 QALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKKWVVNAQYSLSLTISLG 432

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            A   H     ++ + AD  +Y  K++G+N+VV 
Sbjct: 433 CAFYLHPARPFSL-HDADSLMYEGKRNGKNQVVF 465


>gi|229116983|ref|ZP_04246366.1| Sensory box/GGDEF [Bacillus cereus Rock1-3]
 gi|228666511|gb|EEL21970.1| Sensory box/GGDEF [Bacillus cereus Rock1-3]
          Length = 800

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 98/205 (47%), Gaps = 10/205 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----- 118
           IL   +++V I I       Y+    +  +    + I+ L+  D ++ + N   F     
Sbjct: 333 ILFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELE 392

Query: 119 --ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
             I       +KL +++ D++ FK IND  GH +GD+V+  ++++        + + R+G
Sbjct: 393 KSIKRAQKTQDKLGLLYIDLNRFKTINDTLGHSIGDRVLKEVANRFRTCLSPTIPLARIG 452

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           G+EFA      +EQ+   L   L +I E S   + +  S ++++S GIA         +T
Sbjct: 453 GDEFAIIIHNQTEQQLLDLCETLFRITEES--FVVNQHSFYLSLSIGIAVYPFGGINTTT 510

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++  AD A+Y AK+ G N V  + +
Sbjct: 511 LLQHADIAMYSAKEKGNNAVCMYDE 535


>gi|229146087|ref|ZP_04274464.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24]
 gi|228637427|gb|EEK93880.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24]
          Length = 785

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 10/205 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           IL   +++V I I       Y+    +  +      I+ L+  D ++ + N   F   L 
Sbjct: 318 ILFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELD 377

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     +K  +++ D++ FK IND  GH +GDKV+  ++ +        + + R+G
Sbjct: 378 RSIKRAQKTQDKFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIG 437

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           G+EFA      +EQ+   L   L +I E  +  + +  S ++++S GIA         +T
Sbjct: 438 GDEFAIIVHNQTEQQLLDLCKTLFRITE--EPFVVNQHSFYLSLSIGIAVYPFGGINTTT 495

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++  AD A+Y AK+ G N V  + +
Sbjct: 496 LLQHADIAMYSAKEKGNNAVCMYDE 520


>gi|212635867|ref|YP_002312392.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212557351|gb|ACJ29805.1| GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 321

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 87/177 (49%), Gaps = 6/177 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQ 141
           + S + +L +   +       D L+G LN  AF   +        + L ++  DID+FK 
Sbjct: 142 AQSEINQLKVQLKKSEHDMHYDALTGALNRRAFNKDIKGLVEQNPQGLCLIITDIDHFKL 201

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            ND +GH +GD+V+  ++ +L         + R GGEEFA     S    A  LA  +R+
Sbjct: 202 FNDTYGHQLGDQVLKAVARRLGESCHEGSKLYRFGGEEFALLVPKSQLGRARQLAESMRR 261

Query: 202 IIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +E   +          ++  S G+A+   K+  ST+I RAD+ LY AK+ GRNRV+
Sbjct: 262 SLEKLVLKDKRKDQRVDNVRASFGVAQYQDKDSDSTLIERADKQLYEAKRLGRNRVM 318


>gi|118588080|ref|ZP_01545490.1| putative kinase/esterase [Stappia aggregata IAM 12614]
 gi|118439702|gb|EAV46333.1| putative kinase/esterase [Stappia aggregata IAM 12614]
          Length = 513

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 100/205 (48%), Gaps = 12/205 (5%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
            L  I++    + I++  ++  +  +S S    L  S  +    +R D L+GL N   F 
Sbjct: 290 ALPLIVLLASFIAIVAFALATKISRLSAS----LEESERKNRYFARHDALTGLANRHHFS 345

Query: 120 SSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
             L     G  +   SI   D+D FK +ND +GH  GD+VI  ++D+L ++ G    V R
Sbjct: 346 DCLSFSLDGLPDRGFSIFACDLDRFKPVNDTYGHEAGDRVICAVADRLRLLVGENGVVSR 405

Query: 175 LGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEP 232
           +GG+EF        +++A A LA D+ + I +  I+I  G  + I +S GIA        
Sbjct: 406 IGGDEFIVLLTQQMDRDALAALAGDICRSIAD-PIDIDGGHKVGIGVSIGIASAPESGMS 464

Query: 233 ISTIIYRADQALYVAKKSGRNRVVC 257
              +I  AD ALY AK++GRN    
Sbjct: 465 EQDLIRMADMALYRAKETGRNAFEF 489


>gi|284041608|ref|YP_003391948.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
 gi|283945829|gb|ADB48573.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
          Length = 763

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 85/193 (44%), Gaps = 13/193 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDID 137
           +    +        +++  +  D L+GL N +     L         ++  ++++F D+D
Sbjct: 308 VQLLDVTSRKQFEQQLAHQAHHDPLTGLPNRALLTKRLQEALDLAREHDSGVAVIFVDLD 367

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILA 196
            FK IND+ GH  GD+++  +S++L  V      + R GG+E A      ++ E A  +A
Sbjct: 368 NFKVINDSLGHDAGDRLLRNVSERLRRVLRPEDLLARFGGDELAVCLERVADTEPANRIA 427

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRN 253
           + +   +      +  G    +T S GIA    ++P     T++  AD A+Y AK+ G+ 
Sbjct: 428 DRMATALRA--PFVLDGEQRFVTASFGIALARPEDPDRSPDTLLRDADAAMYRAKERGKA 485

Query: 254 RVVCFSDIENNTC 266
           R   F        
Sbjct: 486 RTEIFDASMRRRA 498


>gi|322417650|ref|YP_004196873.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Geobacter sp. M18]
 gi|320124037|gb|ADW11597.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Geobacter sp. M18]
          Length = 729

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 66/265 (24%), Positives = 113/265 (42%), Gaps = 27/265 (10%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE-----NLSLVII---SI 76
            T ++  +   + F+A  +F A   L  +   P   L   + E     N +L +    S 
Sbjct: 181 WTILVALAFMAATFLAAYLFSAR--LQQMVSVPLLNLLATMKEISASKNFALRVAKPSSD 238

Query: 77  TISLLLGYISGSI--LKE----LFISYNRISQLSRIDCLSGLLNHSAFISSLG------- 123
            I LL    +  +  ++E    L      + QL+  D L+ L N + F   LG       
Sbjct: 239 EIGLLYDGFNEMLCEIEERNQILRQRQAHLQQLAHYDPLTRLPNRTLFYDRLGQALFHAD 298

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
              E ++++F D+D+FK IND  GH  GD ++  ++ +L  V  +   V RLGG+EF   
Sbjct: 299 RAREAVAVIFLDLDHFKDINDTLGHRTGDLLLIEVASRLSTVVRSCDTVARLGGDEFTLF 358

Query: 184 ALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRAD 241
               ++   AA++   L  +   +   + +   IH+T S G+       + +  ++  AD
Sbjct: 359 CQNVANVDNAAVVGQKLISLFA-TPFQLGAS-DIHVTASVGVTLFPNDGKTVDELLMNAD 416

Query: 242 QALYVAKKSGRNRVVCFSDIENNTC 266
            A+Y AK  G+N    F    N   
Sbjct: 417 IAMYHAKGCGKNVFALFDKKMNEHA 441


>gi|152995192|ref|YP_001340027.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
 gi|150836116|gb|ABR70092.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
          Length = 731

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 63/213 (29%), Positives = 101/213 (47%), Gaps = 17/213 (7%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           Y + + +   LSL + +I I  L       + K +      + +L+  D L+GL N    
Sbjct: 264 YAISFAVAFLLSLALYAILIQPL------KLRKLVKEKTAELQELAYKDPLTGLPNRRFL 317

Query: 119 ISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
             SL              + ++FD+D FK+IND  GH VGD+V+  + D+L  +      
Sbjct: 318 QDSLPKTLHNNQRRKRISAFIYFDLDNFKRINDTIGHDVGDQVLIIVGDRLNKLKAMSDL 377

Query: 172 VGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-H 229
           V RLGG+EF         E++A+  AN + + I  + I + S   I ++ S GIA    H
Sbjct: 378 VVRLGGDEFGILLGDIGDEKQASEQANRILESIR-TPIKMDSREYI-LSTSLGIAMIPEH 435

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              + TI+  AD ALY AK  G+N+   +++  
Sbjct: 436 GYDLVTIMQNADMALYQAKLKGKNQYAFYTEKM 468


>gi|16331091|ref|NP_441819.1| hypothetical protein sll0267 [Synechocystis sp. PCC 6803]
 gi|1653584|dbj|BAA18497.1| sll0267 [Synechocystis sp. PCC 6803]
          Length = 1578

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 18/197 (9%)

Query: 81   LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS------LGSYNEKL-SIVF 133
            +LG ++   + E   +  +I  L+  D L+ L N    +        L   ++   +IV 
Sbjct: 1129 MLGILT--DVTERKQAEAQIENLAYYDPLTALPNRRLLLDRAENALALAQRSKHFGAIVL 1186

Query: 134  FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG--SSEQE 191
             D+D FK +ND  GH  GD+++  ++ +L         V RLGG+EF           + 
Sbjct: 1187 IDLDGFKTLNDARGHDSGDRLLQMVAKRLADSLRDSDTVARLGGDEFIVLLPELAHDREL 1246

Query: 192  AAIL----ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYV 246
            AA L       +R+ +            + I+ S GI       E +S +   AD A+Y 
Sbjct: 1247 AARLGLGVGEKIRQALAT--PFTLEAEQVQISGSIGITLFPKLNEKVSDLFKEADTAMYQ 1304

Query: 247  AKKSGRNRVVCFSDIEN 263
            AKK+GR++V  F     
Sbjct: 1305 AKKAGRDKVCLFESQMQ 1321


>gi|157155861|ref|YP_001463257.1| diguanylate cyclase [Escherichia coli E24377A]
 gi|157077891|gb|ABV17599.1| diguanylate cyclase [Escherichia coli E24377A]
          Length = 558

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 99/202 (49%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 356 LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNSGALFEKARPLAK 415

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 416 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 475

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++            +  
Sbjct: 476 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 535

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            AD+ LY+AK++GRN +VC SD
Sbjct: 536 LADRRLYLAKQAGRN-LVCASD 556


>gi|303238430|ref|ZP_07324965.1| diguanylate cyclase/phosphodiesterase [Acetivibrio cellulolyticus
           CD2]
 gi|302594134|gb|EFL63847.1| diguanylate cyclase/phosphodiesterase [Acetivibrio cellulolyticus
           CD2]
          Length = 893

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 10/180 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           EL  S   +  L+  D L+ L N   FI  +    E        L+I++ D++ FKQ+ND
Sbjct: 445 ELKKSREELKHLAYYDALTDLPNRLYFIEYIKETLESNKDKYLILAIMYIDLNRFKQVND 504

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD ++  ++ +   +     F+ R+GG+EF      + + +AA  A+ + K++ 
Sbjct: 505 TLGHEVGDMLLKEVAKRFKSISNNDTFIARIGGDEFVVILKNADKLKAAETASFINKVLA 564

Query: 205 N--SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +  S    + G  +  + S GI+        I ++I  AD ++Y AKK G N    + +I
Sbjct: 565 DKISVTFNNKGMDLFTSGSIGISLYPLDSNDIHSVIKNADMSMYTAKKEGGNTYRFYEEI 624


>gi|297537590|ref|YP_003673359.1| diguanylate cyclase [Methylotenera sp. 301]
 gi|297256937|gb|ADI28782.1| diguanylate cyclase [Methylotenera sp. 301]
          Length = 393

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 59/251 (23%), Positives = 95/251 (37%), Gaps = 30/251 (11%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           M+  S +F   I+  I +A        +         + EN+ L   ++           
Sbjct: 151 MLLRSFWFGDEISIAISVAGFIYVGYMIASIRNFNRNMTENIMLRFNAV----------- 199

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
                     + I QL+  D L+ L N       L            + +++F D+D+FK
Sbjct: 200 -------KRESEIKQLAFYDQLTNLPNRRLLFDRLDHALAVSARSGRRGALLFLDLDHFK 252

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG--SSEQEAAILAND 198
            +ND  GH +GD ++  ++++L+        V RLGG+EF            EA      
Sbjct: 253 MLNDTLGHDMGDLLLKKVAERLLRCVRESDTVARLGGDEFVVMLEDLSDDIDEATKQVEK 312

Query: 199 LRK-IIENSQIN-ISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   IIE   I  + +      T S GIA    H      ++  AD A+Y AK++GRN V
Sbjct: 313 VADLIIETLNIPYMLNTLEHSSTPSIGIALFGDHGSSHEELLKHADIAMYAAKRAGRNVV 372

Query: 256 VCFSDIENNTC 266
             F        
Sbjct: 373 RHFDFTMQEAA 383


>gi|289675202|ref|ZP_06496092.1| GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 216

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+GL N   F   L            +LS++  D+DYFK  N
Sbjct: 38  QQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRAIREQSQLSMLMIDVDYFKPYN 97

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DNFGH  GD+ +  ++  +            R GGEEFA     +S   A +LA  LR+ 
Sbjct: 98  DNFGHLEGDEALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQS 157

Query: 203 IENSQI-NISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
           +    I +I+  P   +T+S G+A            +I  AD+ LY AK +GRN+V  
Sbjct: 158 VAGMNIPHIAPVPGSSLTVSIGVATMTPQVGMQSRQLILDADKGLYQAKNNGRNQVAA 215


>gi|209966703|ref|YP_002299618.1| diguanylate cyclase, putative [Rhodospirillum centenum SW]
 gi|209960169|gb|ACJ00806.1| diguanylate cyclase, putative [Rhodospirillum centenum SW]
          Length = 979

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 11/190 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           + + + +      ++  +S  D L+GL N +     L             ++++  D+D 
Sbjct: 529 TMTDVTDRKRFEEQLMYVSTHDPLTGLPNRTLLQDRLQHAADQAERKGNSVAVLLLDLDR 588

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAN 197
           FK +ND+ GH VGDK++  +S +L         +GRLG +EF   A   +E Q AA +A 
Sbjct: 589 FKLVNDSLGHQVGDKLLRAISQRLASSVRPADTIGRLGADEFLIIAEDLTEPQMAARVAE 648

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            +   +  SQ     G  + IT S GI         I  ++  AD A++ AK +G N   
Sbjct: 649 TVLAGL--SQPFGLDGQQLFITCSIGITLFPGDATDIGALLRDADTAMHTAKSAGGNGYR 706

Query: 257 CFSDIENNTC 266
            F+   N   
Sbjct: 707 FFTPEMNEAA 716


>gi|205373191|ref|ZP_03225995.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Bacillus coahuilensis m4-4]
          Length = 446

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 10/181 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQI 142
           ++ EL      +  L+  D L+ + N + FI     +       ++++++F D+D FK I
Sbjct: 1   MIVELLKVQTDLEYLAHFDPLTNVYNRNYFIDKFKDFVFYADDKDEMALLFIDLDRFKII 60

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRK 201
           ND  GH  GD V+  ++++L+ V      +GRLGG+EF           +  ILA ++  
Sbjct: 61  NDMLGHLEGDTVLKGVAERLMNVCKEENVIGRLGGDEFIILVPKIRHMDDVLILAQNIIN 120

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +  S      G   +IT S GI+      + I T+I  AD A+Y AK+ G+N    F D
Sbjct: 121 TL--SLPYKLKGGEYYITASVGISVFPQDGDDIQTLIKNADIAMYSAKERGKNNYQFFDD 178

Query: 261 I 261
            
Sbjct: 179 A 179


>gi|54296012|ref|YP_122381.1| hypothetical protein lpp0029 [Legionella pneumophila str. Paris]
 gi|53749797|emb|CAH11177.1| hypothetical protein lpp0029 [Legionella pneumophila str. Paris]
          Length = 976

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 11/183 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + +       +   +  D L+ L N    ++ L          N+KL+++F D+D FKQ
Sbjct: 536 DVTQKKSYEEMLKYQATFDNLTNLPNRLYAVNKLERAISKSHINNQKLAVLFLDLDEFKQ 595

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           IND+ GH VGD ++  LS++ + +      + RLGG+EF         +++A  +A   R
Sbjct: 596 INDSLGHAVGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILENIMQDKDAESIAKKCR 655

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +I   SQ  +     + ++ S GIA    H +   T++  AD A+Y +K  G+N    F 
Sbjct: 656 EIC--SQPFVIESQELSVSTSIGIAIYPDHGKDAKTLMRNADTAMYQSKIRGKNNWTVFQ 713

Query: 260 DIE 262
           +  
Sbjct: 714 NTM 716


>gi|325929599|ref|ZP_08190713.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
 gi|325540109|gb|EGD11737.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
          Length = 507

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 78/179 (43%), Gaps = 14/179 (7%)

Query: 95  ISYNRISQLSR---IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
            S NR+  L+     D L+G+ N                     LSI F D+D FK++ND
Sbjct: 316 ESENRMRHLAEQASRDALTGVFNRHQLGTALTHEFELASRQGWPLSIAFIDLDEFKRVND 375

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD+V+   +  L  +  T   V R GGEEF      +    A ++   +   I 
Sbjct: 376 AHGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEFLVILPNTPADAALMVIERILAEIA 435

Query: 205 NSQINISSGPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +    G  +HIT SAG+A     E     I  ++  AD  LY +K  GRNRV  + 
Sbjct: 436 RTPMAQLQGGPLHITFSAGLATHGGAERQFDSIDHLLQAADSTLYRSKHRGRNRVTAYD 494


>gi|320109343|ref|YP_004184933.1| diguanylate cyclase [Terriglobus saanensis SP1PR4]
 gi|319927864|gb|ADV84939.1| diguanylate cyclase [Terriglobus saanensis SP1PR4]
          Length = 389

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 112/244 (45%), Gaps = 17/244 (6%)

Query: 29  IYFSIFFSI-FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           I   ++F+I  +A    +  I      L     L  I V+  ++ ++ I  +L L +   
Sbjct: 146 ILAPVWFNIGVLAGFGVLNLIRATAAILRMVKTLFQIPVDTSAVYVLFILAALGLAFGFF 205

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
            +        N++  L+  D L+ + N  AF+                 S++  D+D+FK
Sbjct: 206 WLTTAQLA--NKLEYLASTDPLTRIYNRRAFLEWCDREVIKSQRTETPFSLLILDLDHFK 263

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND FGH  GD  +  + + +         +GR GGEEF     G+S + A I+AN + 
Sbjct: 264 RINDLFGHHSGDAALIAVVETMQNAVRGIDILGRWGGEEFVILLPGASAEAAMIVANRVC 323

Query: 201 KIIENSQINI------SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253
             ++  ++        S  P  H+T+S G++  R  ++ I  I  RAD ALY AK +GRN
Sbjct: 324 NAVKAMRLPAFEQKEPSKDPEQHLTVSLGLSTWRGPEDTIKDIARRADSALYQAKAAGRN 383

Query: 254 RVVC 257
           RV+ 
Sbjct: 384 RVLV 387


>gi|229194143|ref|ZP_04321006.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876]
 gi|228589326|gb|EEK47282.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876]
          Length = 828

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 10/205 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           IL   +++V I I       Y+    +  +      I+ L+  D ++ + N   F   L 
Sbjct: 361 ILFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELD 420

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     +K  +++ D++ FK IND  GH +GDKV+  ++ +        + + R+G
Sbjct: 421 RSIKRAQKTQDKFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIG 480

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           G+EFA      +EQ+   L   L +I E  +  + +  S ++++S GIA         +T
Sbjct: 481 GDEFAIIVHNQTEQQLLDLCKTLFRITE--EPFVVNQHSFYLSLSIGIAVYPFGGINTTT 538

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++  AD A+Y AK+ G N V  + +
Sbjct: 539 LLQHADIAMYSAKEKGNNAVCMYDE 563


>gi|320352178|ref|YP_004193517.1| response regulator receiver modulated diguanylate cyclase
           [Desulfobulbus propionicus DSM 2032]
 gi|320120680|gb|ADW16226.1| response regulator receiver modulated diguanylate cyclase
           [Desulfobulbus propionicus DSM 2032]
          Length = 437

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 95/219 (43%), Gaps = 18/219 (8%)

Query: 46  ANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR 105
           A + +F  G T +    +I  E L+ V + + +           ++ L      +   + 
Sbjct: 223 AVLRMFRAGATDYLVKPFIAEELLARVQVHLQL--------RRHMRRLEEMNRNLYDKAV 274

Query: 106 IDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+GL N   F                 +S +FFD+D+FKQ+ND  GH  GD V+  +
Sbjct: 275 NDALTGLRNKRYFQEAFEEAFARAQRIGIDVSCLFFDLDHFKQVNDTCGHGFGDYVLKTV 334

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
              +           R GGEEF  A   +   +A  +A  +R++I         G    +
Sbjct: 335 GALIKETVRRGDLAARFGGEEFVVALPNTDLGQAKCVAEKIRRLIAAHPFR-DQGLQWRV 393

Query: 219 TISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255
           T+S G+A      P S   ++  ADQALY AK++GR+RV
Sbjct: 394 TVSIGVASLLSARPSSACGLLQLADQALYRAKRAGRDRV 432


>gi|304396822|ref|ZP_07378702.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Pantoea sp.
           aB]
 gi|304355618|gb|EFM19985.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Pantoea sp.
           aB]
          Length = 694

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 117/273 (42%), Gaps = 19/273 (6%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYI--------GLTPFYGL 61
           ++WL                  S+   + IA + ++      +         G++     
Sbjct: 157 ALWLAFHLRQGDHHLLLMRGLASLVMGMAIAGMHYVGMSAARFSESSMMQSGGVSNSGLA 216

Query: 62  EYILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
            ++ +  L ++ I++  S+L   + +  +   L  +   + QL+  D L+ L N +    
Sbjct: 217 VWVTLITLIILGITLLSSMLDAQLRAARLATRLRHANQELRQLAMHDNLTALPNRAMLEQ 276

Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L    +       + ++++ D+D FK +ND +GH VGD+++  +S++L       M + 
Sbjct: 277 QLDLAIKQAMLNENRFAVIYMDLDGFKAVNDTWGHHVGDRLLVAVSERLRSQLSNTMLLV 336

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           RLGG+EF   A       A  LA  L K+I  S         +H+++SAGIA    H   
Sbjct: 337 RLGGDEFVLMAEACDVTPARQLAQKLVKVI--STPFELDRYVLHVSLSAGIAIFPLHGRN 394

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
              +++ AD A+Y  K SGRN    F    ++ 
Sbjct: 395 RQELLFNADSAMYHTKHSGRNGWCLFEPAMSDA 427


>gi|294339054|emb|CAZ87403.1| hypothetical protein; putative EAL, GGDEF and membrane domains
           [Thiomonas sp. 3As]
          Length = 799

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 110/247 (44%), Gaps = 16/247 (6%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL---VIISITISLLLGYISGSI 89
           +F    IA +  IA +        P  G     +  ++    +  SI   L     S  +
Sbjct: 125 VFMYGLIAAMTLIALLLSAGRWSIPTNGWTQQTLLWIAFTEALAFSIATQLFKERFSRKL 184

Query: 90  LK---ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQ 141
           ++   ++   Y     ++  D L+GL N  AF+  L +      ++ L++   D+D FK 
Sbjct: 185 MQHNEQIRDEYKTYRTIAHRDDLTGLANRRAFMQKLSATLVKHPHQALAVGMIDLDRFKI 244

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           +ND  GH VGD+++  +  +L  V      + RLGG+EF     G +S  +   +A+ L 
Sbjct: 245 VNDRLGHSVGDQLLVAVGQRLRSVLRQTDVLARLGGDEFVVMFTGYTSLDQLRAVADRLV 304

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCF 258
           K +E  Q       ++ I +S GI  +   +P+   T++ RAD A+Y +K+ GR +   F
Sbjct: 305 KSME--QEFTVQSHALQIGLSLGIVIQQQAKPVDALTLMRRADLAMYASKEGGRQQYRFF 362

Query: 259 SDIENNT 265
                + 
Sbjct: 363 DQHMEDA 369


>gi|229071016|ref|ZP_04204242.1| Sensory box/GGDEF [Bacillus cereus F65185]
 gi|228711956|gb|EEL63905.1| Sensory box/GGDEF [Bacillus cereus F65185]
          Length = 785

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 10/205 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           IL   +++V I I       Y+    +  +      I+ L+  D ++ + N   F   L 
Sbjct: 318 ILFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELD 377

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     +K  +++ D++ FK IND  GH +GDKV+  ++ +        + + R+G
Sbjct: 378 RSIKRAQKTQDKFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIG 437

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           G+EFA      +EQ+   L   L +I E  +  + +  S ++++S GIA         +T
Sbjct: 438 GDEFAIIVHNQTEQQLLDLCKTLFRITE--EPFVVNQHSFYLSLSIGIAVYPFGGINTTT 495

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++  AD A+Y AK+ G N V  + +
Sbjct: 496 LLQHADIAMYSAKEKGNNAVCMYDE 520


>gi|71278885|ref|YP_268839.1| extracellular solute-binding protein [Colwellia psychrerythraea
           34H]
 gi|71144625|gb|AAZ25098.1| bacterial extracellular solute-binding proteins, family 3/GGDEF
           domain protein [Colwellia psychrerythraea 34H]
          Length = 955

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 17/199 (8%)

Query: 74  ISITISLLLGYIS--GSILKELFISYNRIS----QLSRIDCLSGLLNHSAFISSL----- 122
           I + I L+LG I      L+       ++      ++  D L+GL N       L     
Sbjct: 758 IGVIILLVLGVIVMWNRRLQVEIKHREQLEKIMKHMATHDELTGLANRVLLKDRLSTAIA 817

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                + K++++F D+D FK IND  GH VGD+++  ++ +L     +   V R GG+EF
Sbjct: 818 FHQRQSLKMAVLFIDLDGFKNINDTHGHGVGDELLQQVALRLQGCVRSSDTVVRFGGDEF 877

Query: 181 AAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-IIY 238
                G +S  EAA +A  + ++++  +  +S   +  I  S GIA   +     T ++ 
Sbjct: 878 VLLLTGLNSPNEAAYVAEKVLRMMQK-EFELSKTNAF-IGCSIGIAMYPNDGDNDTDLLK 935

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD  +Y  K +G+N  + 
Sbjct: 936 IADTMMYKVKAAGKNHYIF 954


>gi|209521738|ref|ZP_03270424.1| diguanylate cyclase [Burkholderia sp. H160]
 gi|209497831|gb|EDZ98000.1| diguanylate cyclase [Burkholderia sp. H160]
          Length = 613

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 73/276 (26%), Positives = 118/276 (42%), Gaps = 33/276 (11%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLT-PFYGLEYI---LVEN 68
           L   K LE        +   I   + + + + +    LF   LT P + L Y    L   
Sbjct: 305 LGLAKPLEDVLAGANQLGTRIIRMVLVFSALSVLLAILFARALTKPLHLLAYAATHLFAE 364

Query: 69  LSLVIISITISLLLGYISG---SILKELFISYNRIS-------QLSRIDCLSGLLNHSAF 118
            ++  + +  +  +G ++     + +E+    + +         L+  D L+GL N   F
Sbjct: 365 HAMHTLPLKRTDEIGVLARCFERLRREIRAQMDALHSKQSELVHLASHDVLTGLPNRMLF 424

Query: 119 ISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           +  L S         E L+++F D+D FKQIND FGH VGDKV+  ++ +L  V      
Sbjct: 425 MQKLESAIEEAKFRGEGLAVLFVDLDRFKQINDQFGHSVGDKVLVAVARRLKDVLYPGDV 484

Query: 172 VGRLGGEEFAAAALGSSEQE-----AAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
           V RLGG+EF     G    E     AA++   L + +         G S+ +  S GI+E
Sbjct: 485 VARLGGDEFIVLIEGPRAAEVTPAIAAVIMEALNETL------TIDGNSMTVGASIGISE 538

Query: 227 RCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             H       ++  AD A+Y AK  GR   + + D+
Sbjct: 539 FPHDSGNAEELLLNADAAMYAAKSGGRCAYLRYRDL 574


>gi|170740044|ref|YP_001768699.1| diguanylate cyclase with PAS/PAC sensor [Methylobacterium sp. 4-46]
 gi|168194318|gb|ACA16265.1| diguanylate cyclase with PAS/PAC sensor [Methylobacterium sp. 4-46]
          Length = 468

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 11/206 (5%)

Query: 62  EYILVENLSLVIISITISLLLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
            ++ VE    V+      L  GY++    + E   + +RI+ L+  D L+GL N      
Sbjct: 253 RFVWVEATFSVMREGGTGLPTGYVAAVRDISERKEAESRIAHLALHDALTGLPNRLLLRD 312

Query: 121 SLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L         Y    +++  D+D+FK++ND FGH  GD ++   ++++  +  T     
Sbjct: 313 RLQQELALVQRYGGAFALLCLDLDHFKEVNDRFGHAAGDALLCAAAERIRRIIRTEDTAA 372

Query: 174 RLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE- 231
           R+GG+EF      +++   A  +A  L + + ++   ++  P + + +S G+A       
Sbjct: 373 RIGGDEFVILQTRTNQPVNAEAMARRLIEAL-HAPFALAGFPPLTVGVSIGVAFAPRDSL 431

Query: 232 PISTIIYRADQALYVAKKSGRNRVVC 257
               +   ADQALY AK +GR  V  
Sbjct: 432 DGEGLYRLADQALYAAKAAGRGVVRL 457


>gi|95929313|ref|ZP_01312057.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95134811|gb|EAT16466.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 398

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 65/216 (30%), Positives = 100/216 (46%), Gaps = 21/216 (9%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
            + L  I    LS V   + + +L G +   IL  L   + R   L+  D L+GL +  A
Sbjct: 185 LWALLLICTAQLSDVQARVPVVVLHGLL---ILIVLVSVFERSYTLAFRDELTGLPSRRA 241

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
           F+  +   +   S+   DID+FK++ND  GH VGD+V+  ++ +L  V        R GG
Sbjct: 242 FLDFVNRRSSGYSLAIVDIDHFKKVNDTHGHDVGDQVLKRVAGRLAAV-SNGGKAFRYGG 300

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISS-----------------GPSIHITI 220
           EEF         +      + LR+ I ++   +                    PS+ +T+
Sbjct: 301 EEFVVLFYRRDVERVNDALDLLRQSIADTPFVLRQKPRPEKRPRRVVATKDRQPSLRVTV 360

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S G++       +  +I RADQALY AKK+GRNRVV
Sbjct: 361 SIGVSHWHKGADLDGVIKRADQALYKAKKTGRNRVV 396


>gi|28897260|ref|NP_796865.1| sensory box/GGDEF family protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153840170|ref|ZP_01992837.1| sensory box/ggdef family protein [Vibrio parahaemolyticus AQ3810]
 gi|260366329|ref|ZP_05778781.1| sensory box/GGDEF family protein [Vibrio parahaemolyticus K5030]
 gi|260876227|ref|ZP_05888582.1| sensory box/GGDEF family protein [Vibrio parahaemolyticus AN-5034]
 gi|260897181|ref|ZP_05905677.1| sensory box/GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|260902192|ref|ZP_05910587.1| sensory box/GGDEF family protein [Vibrio parahaemolyticus AQ4037]
 gi|28805469|dbj|BAC58749.1| sensory box/GGDEF family protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149746179|gb|EDM57297.1| sensory box/ggdef family protein [Vibrio parahaemolyticus AQ3810]
 gi|308087992|gb|EFO37687.1| sensory box/GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|308092934|gb|EFO42629.1| sensory box/GGDEF family protein [Vibrio parahaemolyticus AN-5034]
 gi|308108461|gb|EFO46001.1| sensory box/GGDEF family protein [Vibrio parahaemolyticus AQ4037]
 gi|308114733|gb|EFO52273.1| sensory box/GGDEF family protein [Vibrio parahaemolyticus K5030]
 gi|328472026|gb|EGF42903.1| sensory box/GGDEF family protein [Vibrio parahaemolyticus 10329]
          Length = 581

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 18/192 (9%)

Query: 84  YISGSILKELFISYNRISQ-------LSRIDCLSGLLNHSAFISSLG-------SYNEKL 129
            I    + E +++  ++ Q       LS +D L+ + N   F   L             L
Sbjct: 385 LIMARDISERYLAEQKLEQANLELEKLSFMDSLTQVANRRRFDERLHVLWYHHIREKLPL 444

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSS 188
           +I+  DID+FK  ND +GH  GD+ +  ++      V  +   V R GGEEF      ++
Sbjct: 445 TIMLCDIDFFKDYNDCYGHQQGDEALIRVAAVFKQVVNRSSDCVARYGGEEFGFILPNTT 504

Query: 189 EQEAAILANDLRKIIENSQINI-SSGPSIHITISAGIAER--CHKEPISTIIYRADQALY 245
            + A  +A  + + I    +   SS  S H+++S G       H +     I  AD ALY
Sbjct: 505 TEGAEQVAQRIHQQIRQLDMEHGSSEASEHLSVSIGFVSYVPQHGDEPEMGIAMADSALY 564

Query: 246 VAKKSGRNRVVC 257
            AK  GRNR   
Sbjct: 565 QAKADGRNRTCI 576


>gi|307634790|gb|ADI83877.2| response receiver-modulated diguanylate cyclase/phosphodiesterase
           [Geobacter sulfurreducens KN400]
          Length = 799

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 89/214 (41%), Gaps = 23/214 (10%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSY 125
           I++     +L  +    + E   S   I  L+  D L+GL N   F       +S     
Sbjct: 319 IVANGTGTVLAIV--RDVTERRQSEEMIRYLAHHDSLTGLPNRIFFGEMLELVLSRARRD 376

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV------------G 173
            ++++I+F D+D FK IND  GH  GD ++   + +L     +  +V             
Sbjct: 377 GKQVAILFVDLDDFKLINDTLGHAAGDHLLREAAQRLKGCVRSSDYVASGAESGLCGNIA 436

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EP 232
           R GG+EF  +       +  ++A   R I E S+     G  I +++S GI+      E 
Sbjct: 437 RFGGDEFILSLGNLDSVD-DVVAVTQRIISEFSREFRIDGHEIFVSVSIGISMYPDDAED 495

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             +++  AD A++ AK+ G      F+   +   
Sbjct: 496 TGSLVRNADMAMFAAKEEGGPSFRFFTRGMDEAA 529


>gi|304315899|ref|YP_003851044.1| diguanylate cyclase with GAF sensor [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777401|gb|ADL67960.1| diguanylate cyclase with GAF sensor [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 554

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 10/170 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            I + S  D L+   N   F   L             +S++  D+D FK IND +GH +G
Sbjct: 385 EIRKKSITDPLTKTYNRRFFDQILHNSITKSAEDKMPVSLIMLDVDKFKNINDTYGHVIG 444

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++ ++         V R GGEEF+      + ++A ++A  +R  + +  I   
Sbjct: 445 DIVLCEIASRIKSCVRNNDIVARYGGEEFSVILPNLTAEQACVIAERIRYEVSSKPIKTD 504

Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYV-AKKSGRNRVVCFS 259
            G  I IT+SAG+A+  +K E    +I  AD+ALY   K  GR+RV  + 
Sbjct: 505 VG-DITITVSAGVADYPNKAESAEKLISHADRALYAGCKTKGRDRVAVYE 553


>gi|146308555|ref|YP_001189020.1| diguanylate cyclase [Pseudomonas mendocina ymp]
 gi|145576756|gb|ABP86288.1| diguanylate cyclase [Pseudomonas mendocina ymp]
          Length = 365

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 68/237 (28%), Positives = 108/237 (45%), Gaps = 12/237 (5%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE-NLSLVIISITISLLLGYI 85
            M  F++        +   +   L  + +T  + LE  +   +L  ++ S +  LL  ++
Sbjct: 130 LMWTFAVSGLTLRQALATASASVLVILVVTLDHSLEPGMQRLHLIWILASFSFGLLSAFL 189

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
                K +F+  +R++  + +D L+GL N S         I+    Y    S+V  DID+
Sbjct: 190 LERAHKRMFLHQDRLALSASLDGLTGLWNRSRMERFLVEEIARANRYGTPFSVVLIDIDH 249

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND  GH VGD V+   +  L         VGRLGGEEF      +   +A      
Sbjct: 250 FKSVNDTHGHAVGDSVLRQFATLLRDSVRVLDKVGRLGGEEFLIVLPENDAAQAKQAVQA 309

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           L++ I     +         T S GIAE    E + +++ RADQA+Y AK SGR+R+
Sbjct: 310 LQQRINGFAFDRVQRK----TASFGIAEYRPGESLDSLLERADQAMYRAKASGRDRI 362


>gi|330447115|ref|ZP_08310765.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491306|dbj|GAA05262.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 536

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 57/196 (29%), Positives = 99/196 (50%), Gaps = 9/196 (4%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------ 123
           +LV I+I +SL+L Y       +  I+  RI+ L+  D L+GL+N  AF++         
Sbjct: 341 TLVYIAIILSLVLSYWFARYQLKEHINNQRINVLAHHDGLTGLVNRMAFVNQANLMLESC 400

Query: 124 -SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
               +   +++ D+D FK IND +GH  GDKV+  ++  +  VFG    + RLGG+EFA 
Sbjct: 401 MHDEKSACLLYIDLDDFKPINDQYGHATGDKVLIHMASIMRKVFGKQALLARLGGDEFAV 460

Query: 183 AALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
               +   +     A  L++++      ++    IHI  S G      +  +  ++++AD
Sbjct: 461 LLSSAKHLESPVQYAASLQQLL-GCPFEVAPDTYIHIHSSIGGCCFNGEITLEELMHQAD 519

Query: 242 QALYVAKKSGRNRVVC 257
            A+Y AK+ G+N+   
Sbjct: 520 MAMYQAKRKGKNQTCF 535


>gi|291279602|ref|YP_003496437.1| hypothetical protein DEFDS_1213 [Deferribacter desulfuricans SSM1]
 gi|290754304|dbj|BAI80681.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 389

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 120/266 (45%), Gaps = 36/266 (13%)

Query: 29  IYFSIFFSIFIATVIFIANIF--LFYIGLTPFYGLEYI-----------LVENLSLVIIS 75
           IYFS    +F     ++   F    +  L      E++           LV N    I +
Sbjct: 123 IYFSGLILVFFYAYTYLGLRFKYALFSSLIIILAYEFVSIKLTKIPLKNLVANNYFFIST 182

Query: 76  ITISLLLGYISGSILKELFI--------------SYNRISQLSRIDCLSGLLNHSAFISS 121
             + + +GY      ++ F+              S  ++S++  +D L+G+ N    + +
Sbjct: 183 NLLGVFVGYFQELNSRKYFLLLKELEKEKEKLEKSNVKLSEMVHLDGLTGIGNKRYLLEN 242

Query: 122 LGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGR 174
           L    +       +S++  D+D+FK  ND +GH  GD+ +  +S  ++ V  +    VGR
Sbjct: 243 LEKLWQLHKDQNIISVLMIDVDFFKNYNDTYGHIAGDECLKKISSTIMEVVRSEKDIVGR 302

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAER-CHKEP 232
            GGEEF      + E  A  +A  +RK IE  +I +ISS  S  +T+S G+A    H + 
Sbjct: 303 FGGEEFMVILPYADEVTAFKIAERIRKKIEQLKIEHISSKVSNVVTVSIGLATTIPHNDN 362

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCF 258
              ++  AD+ALY AK  GRNRV  +
Sbjct: 363 YEKLVECADKALYTAKNLGRNRVEVY 388


>gi|240140850|ref|YP_002965330.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
           precursor with PAS sensor [Methylobacterium extorquens
           AM1]
 gi|240010827|gb|ACS42053.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
           precursor with PAS sensor [Methylobacterium extorquens
           AM1]
          Length = 563

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 23/182 (12%)

Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+R + L+GL N       L             L+++  D+D FK +ND  GHPVGD ++
Sbjct: 123 LARQEPLTGLCNRVGLHDRLDAALIEAARTGAPLAVLMLDLDRFKTVNDTLGHPVGDALL 182

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-------------SSEQEAAILANDLRKI 202
             ++++L     +   V RLGG+EFA   +                   A  LA  L  +
Sbjct: 183 RKVAERLRRATRSGDLVARLGGDEFAILQVDPQVGPQGSPHIGVEQPHAAEALARRLVDL 242

Query: 203 IENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +  +   +  G  +++ +S G+A      +    ++  AD ALY AK +GR     F   
Sbjct: 243 VGRT--YVVDGHMLNVGVSVGVAIAPADGQNADDLLKHADLALYRAKAAGRGTYRFFEPA 300

Query: 262 EN 263
            N
Sbjct: 301 MN 302


>gi|160873975|ref|YP_001553291.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160859497|gb|ABX48031.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|315266204|gb|ADT93057.1| diguanylate cyclase with extracellular sensor [Shewanella baltica
           OS678]
          Length = 507

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEK----LSIVFFDIDYFK 140
           ++ ++L  S   +  LS  D L+ L N   F         +++     + +V  DIDYFK
Sbjct: 333 TLRQQLEASNAELEFLSTHDPLTKLYNRHYFNRLFINNEQHDQSAKAGMCLVMIDIDYFK 392

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND  GH VGD+++  +S  L         V R GGEEF      SS      L   + 
Sbjct: 393 EINDTLGHNVGDRILEQVSQVLQHCVRESDVVARWGGEEFVILCQQSSLPLVESLCVRIA 452

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + I++ Q       ++ +T S G+A+    EP+     RAD+ALY AK  GRN++ 
Sbjct: 453 ERIKHYQFT----DNVQLTCSFGVAKLADNEPMMLCFERADRALYRAKAQGRNQMC 504


>gi|300856232|ref|YP_003781216.1| putative signal transduction protein [Clostridium ljungdahlii DSM
           13528]
 gi|300436347|gb|ADK16114.1| predicted signal transduction protein [Clostridium ljungdahlii DSM
           13528]
          Length = 756

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 93/192 (48%), Gaps = 13/192 (6%)

Query: 84  YIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFD 135
           YIS  + + ++  + +++  L+  D L+G+ N + F   L           + ++++F D
Sbjct: 307 YISISTDISKIKKTEDKLHSLAYYDLLTGIPNRTLFYERLERSLIRANDNKKAVALLFMD 366

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D FK IND+ GH  GD ++  ++ ++         V RLGG+EF          E    
Sbjct: 367 LDGFKVINDSLGHAAGDLLLKEVAARIKSSIRKSDTVSRLGGDEFTVILENVDSHEYVQA 426

Query: 196 ANDLRKIIENSQINISS-GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253
            +++  II+   +  S     I + +S GIA   + E  +  ++ +AD A+Y AK+SG+ 
Sbjct: 427 VSEV--IIDKILLPYSILDREITLGVSIGIALAPYDESTVEGLMRKADAAMYDAKESGKG 484

Query: 254 RVVCFS-DIENN 264
           +    S +IE  
Sbjct: 485 KYSFSSKEIEKR 496


>gi|302879551|ref|YP_003848115.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
 gi|302582340|gb|ADL56351.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
          Length = 725

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 94/198 (47%), Gaps = 13/198 (6%)

Query: 81  LLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132
           ++ Y+S  + +     S +RI  L+  D L+ L N    +  L             ++++
Sbjct: 258 VVHYVSSQVDITARKASEDRIHNLAFYDPLTQLPNRRLLLDRLRHSVSFSLRDGRHVALM 317

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG--SSEQ 190
           F D+D FK+IND  GH +GD ++  ++++ +    T   V RLGG+EF     G   +  
Sbjct: 318 FIDLDKFKKINDTLGHDIGDLLLKQVAERTLTCVRTCDTVARLGGDEFVVLLDGLAGNLH 377

Query: 191 EAAILANDL-RKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVA 247
           EAA  A  + RKII+    +   +G       S GIA    H +    ++ +AD A+Y A
Sbjct: 378 EAAAQAKQIGRKIIDTLNQSYDLAGHEYQSGASIGIALFDEHCQTAEDLLKQADIAMYQA 437

Query: 248 KKSGRNRVVCFSDIENNT 265
           KK+GRN +  F      +
Sbjct: 438 KKAGRNTLRFFDPEMQAS 455


>gi|89092543|ref|ZP_01165496.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           withPAS/PAC sensor [Oceanospirillum sp. MED92]
 gi|89083055|gb|EAR62274.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           withPAS/PAC sensor [Oceanospirillum sp. MED92]
          Length = 878

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 87/186 (46%), Gaps = 10/186 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQ 141
           + +  +  S  ++S L+  D L+ L N   F + L         +EK+ +   D+D FK 
Sbjct: 434 ADISNIKASEEKLSHLAHHDALTNLPNRLLFSARLDHALTHREASEKIVMFHLDLDRFKH 493

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           IND+ GH  GD+++  ++++L  V      + R+GG+EFA          +A  +A+ L 
Sbjct: 494 INDSLGHKYGDQLLLQVTERLKGVLSDKDTLARVGGDEFAILVEELEHVSDAESIADRLV 553

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +E  Q     G     T S G+A    H + I T+   AD AL  AK SGRN    F 
Sbjct: 554 EAME--QPFTLDGKDYFTTASIGLALAPDHGDDIDTLTKHADIALNQAKDSGRNNFAFFQ 611

Query: 260 DIENNT 265
              + T
Sbjct: 612 PELSET 617


>gi|299534024|ref|ZP_07047376.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           S44]
 gi|298717933|gb|EFI58938.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
           S44]
          Length = 462

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 77/185 (41%), Gaps = 11/185 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDY 138
           +   +  +      + + +  D L+GLLN  A  + L               ++  DID 
Sbjct: 249 ASKDISRMVQREMELRERANRDKLTGLLNRHAGETELKRNQLQAQNQLRPYGVILGDIDL 308

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND FGH  GD+V+  ++  L           R GGEEF      +S   AA LA  
Sbjct: 309 FKQVNDRFGHVAGDRVLKMVAHVLSGKVRRYDHAVRWGGEEFLIVLSDASLGVAAGLAER 368

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +R  +       +       TIS G+      E    ++ RAD ALY AK  GRN+V   
Sbjct: 369 IRCAVA----ECADPEVGRFTISLGVGLWEPGETEDDLLKRADAALYRAKHRGRNQVAIA 424

Query: 259 SDIEN 263
           +   N
Sbjct: 425 TGSMN 429


>gi|89094788|ref|ZP_01167722.1| GGDEF domain protein [Oceanospirillum sp. MED92]
 gi|89080953|gb|EAR60191.1| GGDEF domain protein [Oceanospirillum sp. MED92]
          Length = 365

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 111/266 (41%), Gaps = 18/266 (6%)

Query: 8   FLSIWLCHEKNLESFSP-HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILV 66
            L I+L +     +  P   FM+     F   +   +    IFLF I    F+  E +L 
Sbjct: 94  LLMIYLVYAGGANNTGPLWIFMVAPVALFLHGLKRGLIDIGIFLFGISGLLFFLDETLLA 153

Query: 67  EN------LSLVIISITISLLLGYISGSILKELFISY---NRISQLSRIDCLSGLLNHS- 116
                   + L++  +T++ L  +   S  +    +        QL+++D L+ L N   
Sbjct: 154 ATYDTDFKIRLILSFLTVTFLSSFYEYSREESYQRALEISQEFEQLAKVDPLTKLSNRRD 213

Query: 117 ------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
                      +    E ++++  DID+FK INDN+GH  GD V+  LS    +      
Sbjct: 214 ALEKIEYEFHRMERTQEPVTVLLCDIDHFKAINDNYGHDAGDLVLVSLSRLFELQIRAQD 273

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            V R GGEEF      +    A+I A  L + I  +      G  I  T S G+ +    
Sbjct: 274 TVSRWGGEEFLFVLPQTDLINASIFAEKLHRAIRLNT-AFYQGQVIQCTTSIGMCQLDPG 332

Query: 231 EPISTIIYRADQALYVAKKSGRNRVV 256
             I   + +AD+ALY AK +GRN  +
Sbjct: 333 TSIKESLRKADEALYQAKDAGRNTTM 358


>gi|307822562|ref|ZP_07652793.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
 gi|307736166|gb|EFO07012.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
          Length = 448

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 83/180 (46%), Gaps = 15/180 (8%)

Query: 91  KELFISYNR-------ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDI 136
           +EL  S+         + +LS  D L+ L N   F          +  YN  LS +  DI
Sbjct: 259 EELEESHRTISEQALLLKELSIRDELTQLYNRRYFNEQAIKLFAQMKRYNHSLSFMIGDI 318

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND F H  GD+V+  +S  L         V R GGEEF      +   +AA   
Sbjct: 319 DHFKRINDRFSHATGDEVLKAVSGILKNSTRASDIVARYGGEEFVVIFPETPLMQAAAQC 378

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LRK+IE    +    P + +T+S G+++    E    I+  AD  LY AK  GRNR+ 
Sbjct: 379 ERLRKLIEGFPWSTIH-PDLQVTMSMGLSDDLSLERFEHILAAADNNLYRAKADGRNRLC 437


>gi|119502851|ref|ZP_01624936.1| diguanylate cyclase [marine gamma proteobacterium HTCC2080]
 gi|119461197|gb|EAW42287.1| diguanylate cyclase [marine gamma proteobacterium HTCC2080]
          Length = 403

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 118/266 (44%), Gaps = 20/266 (7%)

Query: 6   KDFLSIWLCHEKNLESFSPHTFMIYFSI---FFSIFIATVIFIANIFLFYIGLTPFYGLE 62
           ++F  +WLC      S  P    + ++     F++  A V++   I +  +         
Sbjct: 139 REFYLVWLC-----SSLIPVACWLAWTADARPFNLIFAAVLWGLAILMAILSYGISRSFS 193

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS----AF 118
            ++   L    ++  ++     +      +L  +  +++ L+++D L+GL N      AF
Sbjct: 194 QMVESGLEREAMAKDMAGFSETLRAK-NTQLQEARKQLADLAKLDELTGLRNRRGADRAF 252

Query: 119 I---SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGR 174
               S        ++++  D+D+FK  ND +GHP GD V+  ++  L  V         R
Sbjct: 253 DMEVSRAQRGGSSIAVIMIDVDHFKAYNDTYGHPSGDDVLKRIAGVLRSVTARAGELAIR 312

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIAERCHKEPI 233
           +GGEEF     G+++ +A +    +R  I   +I  S+ PS  I T+S G+A        
Sbjct: 313 MGGEEFLLLLPGANQADALVAGERIRTRIMALEIEHSASPSGSIVTVSQGVAACIPSMTT 372

Query: 234 S--TIIYRADQALYVAKKSGRNRVVC 257
               ++  AD+ALY +K+ GRN V  
Sbjct: 373 EFKQLLEAADKALYSSKEGGRNTVTL 398


>gi|307721383|ref|YP_003892523.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica
           DSM 16294]
 gi|306979476|gb|ADN09511.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica
           DSM 16294]
          Length = 620

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 13/211 (6%)

Query: 64  ILVENLSLVIISITISLLLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  E LS+  I      ++ +I+    + +L  +       +  D L+GL N    +  L
Sbjct: 410 IYPERLSISAIKNENGDIINFIAQFYDISDLRSAQEEAVYQANHDFLTGLFNRKLLLQRL 469

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
              N K        + +F D+D FK +ND +GH +GD+++  +S ++  +      + R+
Sbjct: 470 HEENSKALRHNFIHAFLFIDLDNFKSVNDTYGHHIGDELLIQVSQRMKSLLREEDILARM 529

Query: 176 GGEEFAAAALGS--SEQEAAILANDLRKII--ENSQINISSGPSIHITISAGIAERCH-K 230
            G+EFA   +    S++ A   A    + I    SQ  +  G  I+I  S GI      K
Sbjct: 530 SGDEFAVILVNIANSKEAAKKYAEKKCQSIIDALSQAFVIEGNEIYIGASIGIKIFPDEK 589

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             I  II  AD+A+YV+KK G+N    + +I
Sbjct: 590 NNIEDIINDADKAMYVSKKHGKNSCSLYCEI 620


>gi|222110973|ref|YP_002553237.1| diguanylate cyclase [Acidovorax ebreus TPSY]
 gi|221730417|gb|ACM33237.1| diguanylate cyclase [Acidovorax ebreus TPSY]
          Length = 334

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 84/185 (45%), Gaps = 17/185 (9%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKLS-----------IVFFDIDYFKQ 141
           + +Y  +   S  D L+GLLN   F            S           +   DID+FK 
Sbjct: 142 YQNYQSLLDYSERDALTGLLNRKTFEEQFSRQTGTPASPGEGEDTVRQWLAVIDIDHFKS 201

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND FGH  GD+V+  ++++L   F +   + R GGEEF       +  +A      LR 
Sbjct: 202 VNDRFGHLYGDEVLILVANRLRTQFQSQDSIFRFGGEEFVVLLRSLTLAQARQALERLRA 261

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            ++            HIT+S G A      P+  I+ RADQALY AK+ GRN+V  + D+
Sbjct: 262 AVQTHVFPQIG----HITVSIGFAATQQGSPVE-ILGRADQALYYAKEHGRNQVCFYEDL 316

Query: 262 ENNTC 266
            N+  
Sbjct: 317 VNSGA 321


>gi|218438312|ref|YP_002376641.1| diguanylate cyclase [Cyanothece sp. PCC 7424]
 gi|218171040|gb|ACK69773.1| diguanylate cyclase [Cyanothece sp. PCC 7424]
          Length = 648

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 17/187 (9%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
           S +++L      + QL   D L+ L N   F          L      LS++  D+D+FK
Sbjct: 448 SEIEKLQHENEILKQLCSTDELTHLANRRYFNEVLDKEWRRLARTFGPLSLILCDVDFFK 507

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GH  GD  +  ++  +    +     V R GGEEFA     +    A I+A  +
Sbjct: 508 AYNDTYGHLAGDFCLQEIAKTIYHCTYRPCDLVARYGGEEFAIILPETDSAGAMIVAEKI 567

Query: 200 RKIIENSQIN-------ISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKS 250
           R  ++   I+       I       +T+S G+A         I+ +I  AD ALY +K++
Sbjct: 568 RLSVKELAISQGKISPKIDLNEQNILTVSLGVACTIPNRRIDINLLIKAADNALYESKQN 627

Query: 251 GRNRVVC 257
           GR+RV  
Sbjct: 628 GRDRVTV 634


>gi|188583519|ref|YP_001926964.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium populi BJ001]
 gi|179347017|gb|ACB82429.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium populi BJ001]
          Length = 716

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 14/192 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS-YNEKLSIVFFDID 137
           +   + E   +  RI  ++R D L+ L N +         + +L +  + +L+++  D+D
Sbjct: 253 TFEDITERRRNEARIIHMARHDGLTDLPNRTRLREIGAERVEALRTGADGQLAVLCLDLD 312

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND+FGH VGD ++  ++ +L         V RLGG+EFA  +       A  LA 
Sbjct: 313 RFKPVNDSFGHAVGDALLRAVAGRLRGHVRGHDVVARLGGDEFAVLSHVEDAAGAMGLAE 372

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRN 253
            L +I+         G ++ I +S GIA    ++     I  ++  AD ALY AK  GR 
Sbjct: 373 RLIEIVAA--PYRLDGITVEIGMSVGIALAGAEDDLPRDIECLLKEADIALYEAKTGGRG 430

Query: 254 RVVCFSDIENNT 265
               F    + T
Sbjct: 431 TARLFEPQMDAT 442


>gi|170728152|ref|YP_001762178.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169813499|gb|ACA88083.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
          Length = 659

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 61/189 (32%), Positives = 95/189 (50%), Gaps = 7/189 (3%)

Query: 74  ISITISLLLGYISGSILKELFISYNRIS--QLSRIDCLSGLLNHSAFISSLGSYNEK--- 128
           ++I I   +  +S + L  L+I+  RI   +++  D L+ L N       L S N+    
Sbjct: 428 LNILIFFAIVSVSLTSLAALWINRRRIRWGKIANTDSLTNLYNRRYLSHKLLSLNKPDND 487

Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             LS +  DID FK +ND++GH VGD+V+  ++   +          R+GGEEF      
Sbjct: 488 APLSCILLDIDLFKVVNDSYGHIVGDEVLVKVATLFINNVREKDICARIGGEEFMILLPN 547

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
           ++ Q+A+ +A DLR  IE+       G    IT S G+ E   ++  S +    D  LY 
Sbjct: 548 TNLQQASDIAEDLRLKIESLHFASLKGEPFTITSSFGVVEAGKEQSFSELSNAVDLLLYT 607

Query: 247 AKKSGRNRV 255
           AK++GRNRV
Sbjct: 608 AKQNGRNRV 616


>gi|163943097|ref|YP_001647981.1| diguanylate cyclase [Bacillus weihenstephanensis KBAB4]
 gi|163865294|gb|ABY46353.1| diguanylate cyclase [Bacillus weihenstephanensis KBAB4]
          Length = 351

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 68/239 (28%), Positives = 114/239 (47%), Gaps = 18/239 (7%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI- 85
             + + +  SIF   + F  N++   I + P     YIL +++ +V++ +   ++  YI 
Sbjct: 117 ITLIWRMKISIFTKWIWF--NVYSLSILILPL----YILFKDIYVVVLYLICCIVAAYIT 170

Query: 86  --SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
             S S + +    +  +   + ID L+ L N   F   +  +       N+ L ++  DI
Sbjct: 171 FVSASYVLQSNELFQTMKHYATIDALTNLGNVRQFDFEMNRHIDSKHMKNDSLCLLLIDI 230

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK +ND +GHP GD+V+  L   L+     P  V R GGEEFA             + 
Sbjct: 231 DHFKYVNDTYGHPAGDEVLKQLGRILLENAPFPNLVFRKGGEEFALLLPKKRVAFGTRIG 290

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +R  +E     + +G  I IT+S G++E   K+     I  AD ALY +K++GRN+V
Sbjct: 291 EQIRLAVEKHSFQLLNGEKIKITVSVGLSEY--KKSPEQFIQSADDALYYSKRNGRNKV 347


>gi|330010583|ref|ZP_08306815.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
 gi|328534481|gb|EGF61070.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
          Length = 302

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 60/194 (30%), Positives = 88/194 (45%), Gaps = 12/194 (6%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS- 124
           V+  +  ++   I L+L  I    + E       +   +  D L+GLLN   F   + + 
Sbjct: 101 VQTYAGPVVLYNIRLMLCIIH--DITEEVHLKKELEFSAAHDPLTGLLNRREFHRLVEAP 158

Query: 125 --YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                   ++  DID+FK IND  GH  GD+V+  LS  L         + R GGEEF  
Sbjct: 159 TFIPRGYCLLLIDIDHFKSINDIHGHQKGDEVLLVLSRILETSVDREDKIYRWGGEEFLL 218

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
               S    A ILA  +R+ +   Q       ++ +T+S G+AE    E +  +  R D+
Sbjct: 219 FLPHSPIGRALILAEGIRQAVSEYQ-------TLSVTVSIGVAEHHDGETVDQLFSRVDK 271

Query: 243 ALYVAKKSGRNRVV 256
           ALY AK  GRNRV 
Sbjct: 272 ALYAAKNDGRNRVT 285


>gi|325498328|gb|EGC96187.1| diguanylate cyclase AdrA [Escherichia fergusonii ECD227]
          Length = 366

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 105/232 (45%), Gaps = 11/232 (4%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKEL 93
             +F+A ++ +    L  + L           +E    + + +   L+  ++S     +L
Sbjct: 135 IRLFVAGLVLMVVACLVTLQLIGIRVAFTSSPLEWWLSLPVIVLYPLIFAWVSYQTATKL 194

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNF 146
                R+  +S  D ++G+ N   + + L         Y    +++  DID+FK IND +
Sbjct: 195 AEHKRRLQVMSARDGMTGVYNRRHWETLLCIEFDHCRRYQRDATLLIIDIDHFKSINDTW 254

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ I  L+ QL +   +   +GR GG+EFA    G+  + A    + + + +  S
Sbjct: 255 GHDVGDEAILALTRQLQMTLRSSDVIGRFGGDEFAVIMCGTPAENAIAAMSRVHERL--S 312

Query: 207 QINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
            + +S  P + + IS G+A    +       +  AD ALY AK +GRNR   
Sbjct: 313 HLRLSCAPQVILRISVGVAPLTPQISHYREWLKSADMALYKAKSAGRNRTEV 364


>gi|307824141|ref|ZP_07654368.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
 gi|307734925|gb|EFO05775.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
          Length = 352

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 103/224 (45%), Gaps = 10/224 (4%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101
           V+ I   +L Y+G +   G E   +   S+++  +   LL+GY++  +  +++ +++RI 
Sbjct: 128 VLLIGACYL-YLGKSGVPGDEVFSLTQSSILLAWLFPMLLVGYVTTMLSSDIYHAFSRIK 186

Query: 102 QLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
             ++ D L+ L N  AF+                 S++  D D  K +ND +GH  G+ +
Sbjct: 187 TTAQTDELTNLYNRRAFMDLFEKQLQQARRRESTFSLLLGDCDNLKIVNDKYGHEAGNLL 246

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++D             R GG+EF      ++ + A ++   ++  +  S  N   G 
Sbjct: 247 LQAIADNFRHCLRGCDSAARYGGDEFTILLPNTNVEAAELVTKRIKDTLVASSFNYR-GN 305

Query: 215 SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +I   IS GIA    H +    ++  ADQA+Y  K+  +N+V  
Sbjct: 306 AITTNISVGIATYPEHGDTAEALLRHADQAMYANKRESKNQVTA 349


>gi|254492479|ref|ZP_05105651.1| GGDEF domain protein [Methylophaga thiooxidans DMS010]
 gi|224462371|gb|EEF78648.1| GGDEF domain protein [Methylophaga thiooxydans DMS010]
          Length = 345

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 59/172 (34%), Positives = 91/172 (52%), Gaps = 9/172 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDN 145
           L    ++  + ++ D L+GL N  AF            +    + I+F D+D FK++ND 
Sbjct: 166 LKKELDQSKREAKTDTLTGLANRKAFDELVTKVTQDADNSGLDVCILFCDLDIFKEVNDK 225

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD+V+  +S+ L         V R GGEEF+   L +S Q A ILA+++RK I +
Sbjct: 226 HGHLVGDQVLKVVSNTLKDSVKGRDLVARYGGEEFSIILLNTSLQNAKILADNIRKEIAS 285

Query: 206 SQINISSGPS--IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +I           IT+S G+A     E + + + RAD+ALY++K+ GRN V
Sbjct: 286 KRIQRKDTRESLGQITMSFGVARYVPTEGVESFMQRADRALYMSKRKGRNCV 337


>gi|170754902|ref|YP_001780010.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium
           botulinum B1 str. Okra]
 gi|169120114|gb|ACA43950.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium
           botulinum B1 str. Okra]
          Length = 892

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 10/214 (4%)

Query: 61  LEYILVENLSLVIISITISLLLGYISG--SILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           LE I +E L     ++  S+ + Y +   + + E      +I  L+  D L+GL N    
Sbjct: 427 LEEIYIEELRKWFSAVVYSMEVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKI 486

Query: 119 ISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           I ++        NEK +++F D+D+FK IND  GH VGD V+  +S +  ++      +G
Sbjct: 487 IETINKTINSYENEKFAVLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKNKIG 546

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           RLGG+EF      +S  +A  LA  +   + N  I       + I  S GI+      + 
Sbjct: 547 RLGGDEFIIVQNITSISDAEKLACKICTTL-NHSIKYKED-DLFIGASIGISIYPEDGKD 604

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            ST++  AD A+Y AKK+G  +   +S   N   
Sbjct: 605 TSTLMKNADAAMYAAKKNGGYKYEVYSRSMNERA 638


>gi|270262480|ref|ZP_06190751.1| diguanylate cyclase [Serratia odorifera 4Rx13]
 gi|270043164|gb|EFA16257.1| diguanylate cyclase [Serratia odorifera 4Rx13]
          Length = 520

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 84/186 (45%), Gaps = 16/186 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           +L     R+ +L+ +D L+GL N   F        +        ++++  DIDYFKQ ND
Sbjct: 339 QLTSINLRLEELALLDGLTGLANRRQFDIALKNELARAARNYRSVALLMLDIDYFKQYND 398

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD+ +  +   L      +   + R GGEE +     +  Q A I A+ + + +
Sbjct: 399 IYGHVAGDQCLQQIGQMLKGLASRSNDIMARYGGEEMSIILPDTDAQGALIFADRVMQAV 458

Query: 204 ENSQINISSGPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              +I     P   IT+S GI       + +     I  AD ALY AKK G+NR+VC   
Sbjct: 459 RELKIPHQGNPHGVITLSIGICAKVPHMYNDTPIGFINMADSALYQAKKEGKNRIVC--- 515

Query: 261 IENNTC 266
             NN  
Sbjct: 516 --NNAA 519


>gi|228911251|ref|ZP_04075056.1| GGDEF domain protein [Bacillus thuringiensis IBL 200]
 gi|228848427|gb|EEM93276.1| GGDEF domain protein [Bacillus thuringiensis IBL 200]
          Length = 352

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 9/214 (4%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           ++  I +   Y      +  + L +IS  I+  + +IS + + +    +  + Q + +D 
Sbjct: 137 YILSILIPSLYIWLIKDINIVGLYLISSIITGYITFISANYVLQSNELFQTMKQYATVDA 196

Query: 109 LSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GL N   F   +  +       N+ L ++  DID+FK +ND +GHP GD+V+  +   
Sbjct: 197 LTGLGNVRQFDLEMNRHISNKNMKNDSLCLLLIDIDHFKYVNDTYGHPAGDEVLKQVGCI 256

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L      P    R GGEEFA             +   +R  +E+    +  G  I IT+S
Sbjct: 257 LRETSQFPDLAFRKGGEEFALLIPNKGLAYGIRMGEQIRIAVESHSFQLLDGTKIKITVS 316

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G++E   +      I  AD ALY +K++GRN+V
Sbjct: 317 VGVSEY--EGSSEQFIQAADDALYYSKRNGRNKV 348


>gi|163783280|ref|ZP_02178273.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881388|gb|EDP74899.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hydrogenivirga sp. 128-5-R1-1]
          Length = 425

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 67/279 (24%), Positives = 117/279 (41%), Gaps = 30/279 (10%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIF----FSIFIATVIFIANIFLF-YIGLTPFYGLEYIL 65
           I+L        + P   ++ F  F       + AT   +A +  +  + L      E + 
Sbjct: 139 IYLISGDKYYLYYPGLMLVIFYAFTLSALRFYYATASVLALLLTYPVVDLYLLKTPEELH 198

Query: 66  VENLSLVIISITISLLLGYISGSILKE-----LFISYN---------RISQLSRIDCLSG 111
           + N+  +  S  + + + Y+     ++     + +++          R+  +S ID L+G
Sbjct: 199 ITNMFFLTSSALLGMPVSYLLERHARKDFLLTMLLAFEKRKTDELNVRLRDISFIDGLTG 258

Query: 112 LLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           + N   F                 +SI+  DID+FK  ND  GH  GD+ +  ++  +  
Sbjct: 259 VANRLRFDDFFRKEWRRARRTKRPISILMLDIDFFKNYNDLLGHLEGDECLKNVAKTIQS 318

Query: 165 VFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISA 222
                   V R GGEEF      +  + A  +A  +R+ IE  +I       S  +T+S 
Sbjct: 319 HIRADVDLVARYGGEEFVVVLPETDLKGALKVAERIRRDIEGLKIAHPGSQVSKFVTVSI 378

Query: 223 GIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCFS 259
           G+A     + +    ++  AD+ALYVAKK GRNRV  +S
Sbjct: 379 GVASIVPIDNLKKEVLLNMADKALYVAKKRGRNRVEAYS 417


>gi|163803659|ref|ZP_02197522.1| GGDEF family protein [Vibrio sp. AND4]
 gi|159172531|gb|EDP57393.1| GGDEF family protein [Vibrio sp. AND4]
          Length = 337

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 92/176 (52%), Gaps = 5/176 (2%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQI 142
           +G  +  L     ++ + +  D LS L N  AF + L      ++ +++V  DID+FK  
Sbjct: 160 AGKEISRLKCQLAQVQKDALFDGLSNLYNRRAFDNDLQMLIDNSQSMTLVLLDIDHFKGF 219

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           NDN+GH  GD VI  ++ +L       +   R GGEEFA      S +     A+ LR+I
Sbjct: 220 NDNYGHLFGDTVIKAIARRLQQSCRDGISAYRFGGEEFALIVPNKSIRIGRQYADTLRRI 279

Query: 203 IENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           IE  ++    S     +IT S G+AE    + + +++ +AD+ LY AK+ GRNRV+
Sbjct: 280 IEKLRVRDKRSGSQVQNITASFGVAEYEVGDTLDSLVTKADKQLYEAKQLGRNRVM 335


>gi|153874112|ref|ZP_02002451.1| GGDEF domain protein [Beggiatoa sp. PS]
 gi|152069423|gb|EDN67548.1| GGDEF domain protein [Beggiatoa sp. PS]
          Length = 183

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 86/180 (47%), Gaps = 11/180 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + +  L      +  L+  D L+ L N   F  +L              +++F D+D FK
Sbjct: 5   TDISSLQQDIENVRYLANYDSLTRLPNRLLFRDNLLQAEALSKRNQRVFALLFIDLDGFK 64

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            +ND  GH +GD+++  ++ +L         V RLGG+EF        + ++AA +A D+
Sbjct: 65  PVNDRLGHAIGDQLLQGVAKRLQKCVRETDSVARLGGDEFTVILNNLRAAKDAAKVAGDI 124

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            + ++  +    +G  + ++ S GI+   +  + I T+I +AD A+Y AK +G+     +
Sbjct: 125 VQCLQ--KPFQLNGHHVIVSASIGISIYPNDSQDIDTLIKQADSAMYEAKHAGKGCFCFY 182


>gi|238790452|ref|ZP_04634222.1| Diguanylate cyclase [Yersinia frederiksenii ATCC 33641]
 gi|238721478|gb|EEQ13148.1| Diguanylate cyclase [Yersinia frederiksenii ATCC 33641]
          Length = 319

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 106/228 (46%), Gaps = 10/228 (4%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR 99
              + IA   L        +  E   ++  + + +      LLG ++    K L  +   
Sbjct: 94  GLALQIACSLLTAWIFNLPFRPETSHIQVYACLPMIFIYPSLLGLVTYRTAKRLAENKEE 153

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + ++S  D L+GL N   +   L         Y    +++  DID FK IND FGH VGD
Sbjct: 154 LLRISVRDGLTGLYNRRHWEHQLHNQFDSCRRYQHGATLILLDIDNFKAINDTFGHAVGD 213

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + I  L+++L++       VGR GG+EF A    ++ ++   +   +++ +    I  + 
Sbjct: 214 EAITVLAEELLLGLRAIDIVGRYGGDEFGAILPNTTAEQTREILTRIQEKLAG--IVFTQ 271

Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            P++ + +SAGIA+  H        +  AD ALY+AK +GRNR+   S
Sbjct: 272 APTLQLKVSAGIADYRHDMINYQQWLKAADSALYLAKDNGRNRIELAS 319


>gi|228911569|ref|ZP_04075358.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200]
 gi|228848072|gb|EEM92937.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200]
          Length = 834

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 49/201 (24%), Positives = 96/201 (47%), Gaps = 10/201 (4%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           ++++V I I       Y+    + ++    + I+ L+  D ++ + N   F   L     
Sbjct: 373 SVTIVPIMIERQTFGSYVMVKDITKMKQQQDEINYLAFHDTVTEIGNRIFFQQELDRSTK 432

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 +K  +++ D++ FK IND  GH +GD+V+  ++ +        + + R+GG+EF
Sbjct: 433 RAQKTQDKFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPTIPLARIGGDEF 492

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYR 239
           A      +EQ+   L   L +I E  +  + +  S ++++S GIA         +T++  
Sbjct: 493 AIIVHNQTEQQLLDLCETLFRITE--EPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQH 550

Query: 240 ADQALYVAKKSGRNRVVCFSD 260
           AD A+Y AK+ G N V  + +
Sbjct: 551 ADIAMYSAKEKGNNAVCMYDE 571


>gi|186473548|ref|YP_001860890.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum
           STM815]
 gi|184195880|gb|ACC73844.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum
           STM815]
          Length = 689

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 100/229 (43%), Gaps = 26/229 (11%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLS 110
           G+   +    IL+   +++I+++ +S       +++GS+     +  N+I +L+  D L+
Sbjct: 210 GVNAQWLATTILLFTFAILIVTLILSRFDARTTFLAGSV----SLLNNQIVRLATYDTLT 265

Query: 111 GLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            L N       +              +I+F D+D FK IND+ GH  GD+V+   S  L 
Sbjct: 266 NLPNRVTLTERIEHAIRTSKLNGRGFAILFMDLDGFKTINDSLGHAFGDEVLKSFSHSLR 325

Query: 164 VVFGTPMFVGRLGGEEFAAA-----ALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
                   V RLGG+EF        A   +++ A  + + +RK IE      +   ++ +
Sbjct: 326 QCVRNVDTVARLGGDEFVVLAESLGAPQDAQKMAEAVLDRMRKGIE------TQSQTLQV 379

Query: 219 TISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             S GIA        +  ++  AD A+Y AK+ GR+    F    N   
Sbjct: 380 MPSIGIALYPQDGHSVDELLKHADAAMYEAKRGGRSTYRFFEAHMNEAA 428


>gi|220933673|ref|YP_002512572.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994983|gb|ACL71585.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 685

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQ 141
            + E   +   I Q +  D L+ L N   F+  L     K        +++  D+D FK+
Sbjct: 236 DISERKRAEEIIQQQANFDPLTKLPNRRLFLDRLDQQIAKCQRTGAALALLLIDLDEFKE 295

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           +ND  GH VGD ++   + ++         V RLGG+EF       + +     +A  L 
Sbjct: 296 VNDTLGHDVGDVLLQEAARRISGCIRDTDTVARLGGDEFTVILSDLTGKAHVEEIAQKLI 355

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +      +  G + HI+ S GI       E +  ++  ADQA+Y AK+ GRNR   F+
Sbjct: 356 SRVAE-PYYLREGVA-HISASIGITLYPGDAEDMGELMKHADQAMYSAKRLGRNRFCYFT 413

Query: 260 DIENNTC 266
                  
Sbjct: 414 HALQEAA 420


>gi|157377093|ref|YP_001475693.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157319467|gb|ABV38565.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 340

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 63/286 (22%), Positives = 122/286 (42%), Gaps = 39/286 (13%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILV-- 66
           LS+ +        +  +  +++  +F+ + +  + F +     +  +  F  L Y+L+  
Sbjct: 54  LSLGILSIVRKTQYLHNWTLLFLFVFYCVILVGISFASFRSGLFAWIFVFPILSYLLLGR 113

Query: 67  ---ENLSLVIISITISLL-------------------------LGYISGSILKELFISYN 98
              + ++L  +S+ + +L                         +  ++     +      
Sbjct: 114 RNGQAVTLCYVSLGLGILGWRLWLNDPNIHLVAMANYSLCVAAIWGVAHVYESKREEVVE 173

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
           R+  ++  D L+GL N     S      +        L ++  D+D+FK +NDN+GH VG
Sbjct: 174 RLQNMAARDPLTGLYNRLHLESVFEQITQSESSPDSSLFMLLIDLDHFKSVNDNYGHEVG 233

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DKV+  +++ +    G   +  R+GGEEF     G++      +A  L+  IE S +++ 
Sbjct: 234 DKVLVRVAELIKQTIGENDWGFRVGGEEFCLLLPGTNHASVQEVAQRLQLAIEGSAVSVG 293

Query: 212 SGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
               +  T S GIA+     E +  +   AD+ LY AK+ GRN VV
Sbjct: 294 E-HKVSTTASIGIAQWPESGELMQALYRTADRRLYRAKEQGRNCVV 338


>gi|330820697|ref|YP_004349559.1| diguanylate cyclase [Burkholderia gladioli BSR3]
 gi|327372692|gb|AEA64047.1| diguanylate cyclase [Burkholderia gladioli BSR3]
          Length = 562

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 9/181 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDID 137
           I  S ++E      ++ + ++ D L+ L N  AF +             +   ++  D+D
Sbjct: 378 ILESRMRERASLAEKLKRQAQTDALTKLFNRRAFETFGQIKLRGADPAGQPF-LILLDLD 436

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK IND FGHPVGD V+  ++D L         V R GGEEF           A  LA 
Sbjct: 437 HFKSINDRFGHPVGDGVLVKVADALASQVRPGDLVARFGGEEFVVLLHAVDVAAALSLAE 496

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            L   I    +  + G ++ +T S G+A       +  ++  AD ALY AK+ GR+R+  
Sbjct: 497 RLLAAIRAVAVFAADGTAVPVTASLGVASGSQ-LSLRQLLSHADLALYEAKRLGRDRIRM 555

Query: 258 F 258
           F
Sbjct: 556 F 556


>gi|300868493|ref|ZP_07113112.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
 gi|300333482|emb|CBN58300.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
          Length = 1265

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 72/169 (42%), Gaps = 8/169 (4%)

Query: 97   YNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
               +   S  D L+GL N                  +  + I+  DID FKQ ND  GH 
Sbjct: 1094 RETLQNQSIRDPLTGLFNRRYLEEFLTKEIDRAQRNHYSIGIIMLDIDNFKQFNDTLGHE 1153

Query: 150  VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
             GD V+  +   L  +        R GGEE       SS ++  I A +LR+ I   ++N
Sbjct: 1154 AGDFVLQEIGYLLKKMIRVSDVACRYGGEEMTVILPESSLEDTYIKAEELREAIAQLKLN 1213

Query: 210  ISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
             +      +T S G+A         + +I  AD ALY AK SGRN+V+ 
Sbjct: 1214 YNGKRLEGLTASCGVACFPDRGTTGNAVIIAADAALYQAKGSGRNKVIV 1262


>gi|296157943|ref|ZP_06840776.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Burkholderia sp. Ch1-1]
 gi|295891711|gb|EFG71496.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Burkholderia sp. Ch1-1]
          Length = 689

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 103/237 (43%), Gaps = 28/237 (11%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
           ++T     ++ LF            IL+  L L       + L+G +S            
Sbjct: 211 VSTTWLATSVILFTFA---------ILIVTLMLSRFDARTTFLVGAVSN--------LNG 253

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
           +I +L+ +D L+GL N S     +     +        +++F D+D FK IND+ GH VG
Sbjct: 254 QIVRLATLDSLTGLPNRSTLTERIEHAIHRAQRQRSMCAVLFMDLDGFKTINDSLGHSVG 313

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINI 210
           D+V+   + +L++       V RLGG+EF   A    S ++A  LA  +   +       
Sbjct: 314 DQVLTAFAQRLLLCVRASDTVARLGGDEFVVLAEDLGSREDAGALAEGVLDRMRMGM--W 371

Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           +    + +  S GIA   H  + + +++  AD A+Y AK++GR+    F    N   
Sbjct: 372 TDSQPLQVMPSIGIALFPHDGDTVDSLLKNADAAMYEAKRAGRSTYRFFERSMNEAA 428


>gi|192361938|ref|YP_001984117.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107]
 gi|190688103|gb|ACE85781.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107]
          Length = 856

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 84/196 (42%), Gaps = 16/196 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           +    + E   +  RI+ L+  D L+ L N       L              ++++ D+D
Sbjct: 412 MLSRDITERKENEARINNLAFFDPLTQLPNRRLLQDRLEHAIATGQRQAALGALLYIDLD 471

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE------ 191
            FK +NDN GH VGD ++  ++D+L         VGRLGG+EF     G S         
Sbjct: 472 DFKTLNDNRGHHVGDLLLIAVADRLRHSLRHEDTVGRLGGDEFLVILEGLSNDRDQAAQQ 531

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250
              +A  + + +  +Q+ +        + S GI      +  I  ++ RADQA+Y AK +
Sbjct: 532 VQQIAEKILQSL--NQVYVLDEQEYFNSPSIGICLFGDDDADIEDLLKRADQAMYHAKAA 589

Query: 251 GRNRVVCFSDIENNTC 266
           GRN +  F      + 
Sbjct: 590 GRNTLRFFDPHMQASA 605


>gi|172038425|ref|YP_001804926.1| diguanylate cyclase [Cyanothece sp. ATCC 51142]
 gi|171699879|gb|ACB52860.1| putative diguanylate cyclase (GGDEF domain) [Cyanothece sp. ATCC
           51142]
          Length = 259

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 79/183 (43%), Gaps = 11/183 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDY 138
           S  I+  L        +L   D L+ + N   F              N  +S++  D+DY
Sbjct: 70  SAQIIARLLSYLANQEKLVLFDDLTTIPNRRYFNRYYQQEWRRCQRENYPMSLLLCDLDY 129

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           FK  ND +GH  GD  +  ++  L          V R GGEEF      ++ + A I+A 
Sbjct: 130 FKSYNDYYGHQQGDNCLRQVAQILQNTLKRPGDMVFRYGGEEFVIILPNTASEGAEIIAE 189

Query: 198 DLRKIIENSQI-NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNR 254
            + + I+  QI +  S  S ++TIS GIA     +     T+    D ALY AK +GRNR
Sbjct: 190 QIVQSIQQEQIAHYPSPVSSYVTISLGIAVTFPTNALSPQTLFEMVDMALYRAKATGRNR 249

Query: 255 VVC 257
              
Sbjct: 250 YCL 252


>gi|167742071|ref|ZP_02414845.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 14]
          Length = 688

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 65/215 (30%), Positives = 100/215 (46%), Gaps = 15/215 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRIS----QLSRIDCLSGLLNHSAFIS 120
           L   ++L  ++I I  L+          L  S +R+S    +++  D L+ L N      
Sbjct: 214 LAATVALFTVAILIVALILSHFDVRTTLLAGSVSRLSGQIVRMAAFDTLTDLPNRRTLNE 273

Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            LG           KL+I+F D+D FK IND+ GHP GD+V+   S +L+        V 
Sbjct: 274 HLGRALAAARARGGKLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVA 333

Query: 174 RLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           RLGG+EF       SS+ EAA +A D+ + +   + N   G ++ +T S GIA      +
Sbjct: 334 RLGGDEFVVLLESVSSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGD 391

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              T++  AD A+Y AK+ GR     F    +   
Sbjct: 392 TADTLLRHADAAMYAAKRGGRCTYRFFEATMDEAA 426


>gi|118590580|ref|ZP_01547982.1| PAS:GGDEF protein [Stappia aggregata IAM 12614]
 gi|118437043|gb|EAV43682.1| PAS:GGDEF protein [Stappia aggregata IAM 12614]
          Length = 1124

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 13/191 (6%)

Query: 83   GYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFF 134
            G+I +   +    ++  +I   +  D L+GL N + F + L       +       ++  
Sbjct: 929  GWIGTHEDITSRELAAEKIQFAAHHDTLTGLANRTLFNAKLEEALTAAAHNGIAGDLMLL 988

Query: 135  DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-- 192
            D+D FK +ND+FGH VGD+++  ++ +L         V RLGG+EF     G+    A  
Sbjct: 989  DLDKFKPVNDSFGHDVGDELLKSVAQRLRECVRASDLVARLGGDEFGIILTGTGSGNAGT 1048

Query: 193  AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSG 251
            A +A+ + K I  +   +     I + IS GI+     E   S +I RAD ALY  KK+G
Sbjct: 1049 AEIADRIVKKI-GTPFTVLDNI-ISVGISVGISPITGSELDPSPVIKRADLALYEVKKNG 1106

Query: 252  RNRVVCFSDIE 262
            RN    + + +
Sbjct: 1107 RNGFKFYEEED 1117


>gi|322835534|ref|YP_004215560.1| diguanylate cyclase [Rahnella sp. Y9602]
 gi|321170735|gb|ADW76433.1| diguanylate cyclase [Rahnella sp. Y9602]
          Length = 375

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 115/254 (45%), Gaps = 22/254 (8%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYIGL--TPFYGLEYI-----LVENLSLVIISITI 78
            F ++  + F+  IA    +  ++ F + L  + F+ L  +     ++E  +++++S   
Sbjct: 121 VFPLFCMLIFTALIALYPTMPILYSFTLPLWFSLFFHLVLLKADIPILEIAAMIVVSALF 180

Query: 79  S----LLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SY 125
                +L  +   S+ +E    +  +++  L+  D L+G+ N     + L          
Sbjct: 181 ESARIMLSRWFVLSVRRECDNQLLVSKLDNLAHYDPLTGVANRRQLDNQLEQLIAQTERQ 240

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAA 184
               S++  D+DYFK+ ND++GH  GD  +  +++    V   P   V R GGEEF    
Sbjct: 241 GGTFSLIMIDVDYFKKYNDHYGHQAGDTCLVGIAECFKQVVRQPADLVARYGGEEFVILL 300

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQA 243
             ++  +A ++A  +R+ +  + I  +       +T+S GI +         ++ RAD A
Sbjct: 301 HSATANDAEVVAERIRQSVTQAAIPHALSQVADTVTVSQGIMQWSPGMTSLELLKRADGA 360

Query: 244 LYVAKKSGRNRVVC 257
           LY AK +GRN    
Sbjct: 361 LYDAKHAGRNGYCV 374


>gi|218891041|ref|YP_002439907.1| hypothetical protein PLES_23041 [Pseudomonas aeruginosa LESB58]
 gi|218771266|emb|CAW27031.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
          Length = 341

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 63/188 (33%), Positives = 97/188 (51%), Gaps = 12/188 (6%)

Query: 80  LLLGYISGSILKE----LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128
           L  GY+    L E    L    +R  + S +D L+ L N + F       +    + +++
Sbjct: 153 LAEGYLQLRSLTEHTRFLRQEIDREQRKSLLDPLTQLWNRAGFHALHQHELELARASDQR 212

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           + I++ DID+FK+IND  GH  GD V+   + +L         + R GGEEF A      
Sbjct: 213 IGIIYSDIDHFKRINDTLGHRAGDSVLREAASRLRAALRPEDLLARFGGEEFVAMVQVRE 272

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
             E  ++AN +R+++E + I+  +G S+ +TISAG       E     + RAD ALY AK
Sbjct: 273 TTELTMIANRIRELMEATPIDC-AGTSVPVTISAGCTLAGSGEEPEQALARADAALYDAK 331

Query: 249 KSGRNRVV 256
           ++GRNRVV
Sbjct: 332 RAGRNRVV 339


>gi|114321830|ref|YP_743513.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228224|gb|ABI58023.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 1023

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 94/220 (42%), Gaps = 20/220 (9%)

Query: 58  FYGLEYILVENLSLVIISITIS-------LLLGYI-SGSILKELFISYNRISQLSRIDCL 109
           + G  +   ++  L +  ITIS        L+ Y+   S + ++     ++  L+  D L
Sbjct: 536 WQGELWNRRKSGELYLQLITISAVRDESGRLINYVGLLSDITDMKAYQRKLEFLTHYDPL 595

Query: 110 SGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           + L N    +  L            ++ + + D+D FK IND  GH VGD+V+  L+ +L
Sbjct: 596 TELPNRVLLLDRLRKAMQLAQREQRRVCVAYVDLDDFKTINDVHGHRVGDQVLLELASRL 655

Query: 163 VVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                      RL G+EFA   +   S  E   +A  +   +   +     G ++  + S
Sbjct: 656 SAARREGDTASRLSGDEFAMVFVNLGSVAECHRMAARVLDAVA--RPITIEGVALQTSAS 713

Query: 222 AGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFS 259
            G+A     E      ++ +ADQA+Y AK  G+NR   F 
Sbjct: 714 IGVAHYPQDEEVDAEQLLRQADQAMYQAKLQGKNRHHVFD 753


>gi|119776003|ref|YP_928743.1| response regulator [Shewanella amazonensis SB2B]
 gi|119768503|gb|ABM01074.1| response regulator containing a CheY-like receiver domain and a
           GGDEF domain protein [Shewanella amazonensis SB2B]
          Length = 564

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 106/233 (45%), Gaps = 25/233 (10%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
           F+ +  + ++  A +++    L  F  L +      +  + S+   +LL    GS ++++
Sbjct: 347 FYLVAFSALLLGAFVYM----LKSFGVLPHNAFTQNAFQLGSLVEMVLLSLALGSRMQDI 402

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNF 146
                       ID L+GL N   F   L          ++ LS++  DIDYFKQ ND+ 
Sbjct: 403 KRRN-------HIDVLTGLYNRRFFDEQLQQEYLKACRRHQPLSLLVLDIDYFKQFNDSR 455

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GDK +  ++D L      P    R GGEEFA     +S  EA  LA  +R+ +   
Sbjct: 456 GHAEGDKALQLVADILAGTVQKPGMACRYGGEEFALILPETSAGEAMQLAERIREKVVR- 514

Query: 207 QINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVC 257
                +   I +T+S G +E   K+ +S   +   AD+ALY AK  GRN V  
Sbjct: 515 ----DTKERIELTVSIGCSEFDAKQHLSGFALFEAADEALYRAKADGRNCVRA 563


>gi|330940755|gb|EGH43753.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 525

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 99/228 (43%), Gaps = 15/228 (6%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK----ELFISYN 98
           I  A          P++      +    ++I+++    +L Y     L     EL I+ N
Sbjct: 275 IVAAAGISSQHVFAPWWAYAQRSMTITGIIILALVFLGVLLYRQIQQLITAEGELNIARN 334

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
            +  ++  D L+ L N   F ++L     +       ++I+  DID+FKQ ND +GH  G
Sbjct: 335 DLEIIAHTDSLTHLANRRCFDTALQQEWGRASRNDATIAIILLDIDWFKQYNDTYGHLQG 394

Query: 152 DKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D  +  ++  +   +  +     R GGEEF      +    A  LA  +R  IE S I  
Sbjct: 395 DDCLRQVAGLIGNSLDRSGDMAARYGGEEFVILLPETDLAGALRLAEKIRSSIEASCIEH 454

Query: 211 SSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255
           SS P   ++IS+G+      E        +  AD+ LY+AK  GRNRV
Sbjct: 455 SSSPLGRLSISSGVVAINAAEKKDEHTAALKEADRLLYLAKTKGRNRV 502


>gi|309779577|ref|ZP_07674338.1| diguanylate cyclase [Ralstonia sp. 5_7_47FAA]
 gi|308921818|gb|EFP67454.1| diguanylate cyclase [Ralstonia sp. 5_7_47FAA]
          Length = 387

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 69/237 (29%), Positives = 116/237 (48%), Gaps = 15/237 (6%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILV---ENLSLVIISITISLLLGYISGSILKELF 94
           F+A   ++  +F     +   +G+  + +      +++ + + I  L    +G ++    
Sbjct: 151 FVAAAAYLGALFHIARAVAGGFGVPQMALLDPSPWNVLFLGLAIVTLPCLSTGMVMLAHD 210

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFG 147
               R+ QL+ ID L+G L   AFI           +  + +SI   DID FK +ND FG
Sbjct: 211 QLARRMEQLASIDELTGALMRRAFIEKANTVLRETVAKGKPVSIAILDIDEFKAVNDAFG 270

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD+ +  ++  +     +    GRLGGEEFA   + + + +AA+L ++LR  +E S 
Sbjct: 271 HAVGDRTLRHVASVVTARLRSSDLFGRLGGEEFAIICVEAQKADAAVLIDELRLAVEGSP 330

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           I       +  T SAG+      + +   + RAD ALY+AK +GRNRVV   ++E  
Sbjct: 331 IE-----GVRCTFSAGVECVMPGDTLEVALARADAALYLAKATGRNRVVTAPEVEER 382


>gi|317130908|ref|YP_004097190.1| diguanylate cyclase/phosphodiesterase [Bacillus cellulosilyticus
           DSM 2522]
 gi|315475856|gb|ADU32459.1| diguanylate cyclase/phosphodiesterase [Bacillus cellulosilyticus
           DSM 2522]
          Length = 886

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 92/179 (51%), Gaps = 11/179 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQIND 144
           L  S  ++ +L+  D L+GL N   F   L S  +         ++++F D++ FKQIND
Sbjct: 451 LQKSEEKLQKLAYYDMLTGLPNRQHFQKYLESLLQSEANKKAPTIAVMFVDLNQFKQIND 510

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD+++  +S++L+ +    + V RLGG+EF      + ++E       L+++  
Sbjct: 511 TLGHKVGDELLKLVSNKLMKLEKEKIKVFRLGGDEFVIVLTEADKKEVKRFGGKLQRLFA 570

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             +  I +  S+++T S G++      + +  ++  AD A+Y AK+ GRN +  F    
Sbjct: 571 --EPIILNNMSLYVTASFGVSMYPKDGDTLDRLVRFADMAMYNAKEKGRNYIQFFDQSM 627


>gi|239809507|gb|ACS26228.1| unknown [uncultured bacterium pJM6]
          Length = 417

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 72/174 (41%), Gaps = 11/174 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQ 141
            + E       + + +  D L+GL N   F     +         +  S++  D D FK 
Sbjct: 245 DITEQKRLEQELERAALRDALTGLFNRRHFYHITEAEQTHAMPLTQDYSLLLIDTDRFKS 304

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH  GD+V+  L+  L         V R GGEEF      +S   A  LA  LR 
Sbjct: 305 INDLFGHLKGDEVLCALARTLEACARIDDLVFRWGGEEFLLLLPRTSLDVALNLAETLRA 364

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +    +          T+S G+A     E I  +  R D ALY AK  GRNRV
Sbjct: 365 TVARVSLPGLP----RFTVSIGVARHEANESIDELFKRVDDALYKAKNEGRNRV 414


>gi|188583702|ref|YP_001927147.1| diguanylate cyclase/phosphodiesterase [Methylobacterium populi
           BJ001]
 gi|179347200|gb|ACB82612.1| diguanylate cyclase/phosphodiesterase [Methylobacterium populi
           BJ001]
          Length = 574

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 15/174 (8%)

Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+R + L+GL N       L          +  L+++  D+D FK +ND  GHPVGD ++
Sbjct: 139 LARQEPLTGLCNRVGLHDRLDAALAEAARTDAPLAVLMLDLDRFKAVNDTLGHPVGDALL 198

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-----EQEAAILANDLRKIIENSQINI 210
             ++++L     +   V RLGG+EFA    G S      Q A  LA  L  ++  +   +
Sbjct: 199 RKVAERLRKATRSGDVVARLGGDEFAIIQGGPSSGAEQPQAAEALARRLVDLVGRT--YV 256

Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             G  +++ +S G+A           ++  AD ALY AK  GR     F    N
Sbjct: 257 VDGHMLNVGVSVGVALSPADGRNADDLLKHADLALYRAKAEGRGTHRFFEPAMN 310


>gi|153938294|ref|YP_001389725.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium
           botulinum F str. Langeland]
 gi|152934190|gb|ABS39688.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium
           botulinum F str. Langeland]
          Length = 892

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 10/214 (4%)

Query: 61  LEYILVENLSLVIISITISLLLGYISG--SILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           LE I +E L     ++  S+ + Y +   + + E      +I  L+  D L+GL N    
Sbjct: 427 LEEIYIEELRKWFSAVVYSMEVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKI 486

Query: 119 ISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           I ++        NEK +++F D+D+FK IND  GH VGD V+  +S +  ++      +G
Sbjct: 487 IETINKTINSYENEKFAVLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKNKIG 546

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           RLGG+EF      +S  +A  LA  +   + N  I       + I  S GI+      + 
Sbjct: 547 RLGGDEFIIVQNITSISDAEKLACKICTTL-NHSIKYKED-DLFIGASIGISIYPEDGKD 604

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            ST++  AD A+Y AKK+G  +   +S   N   
Sbjct: 605 TSTLMKNADAAMYAAKKNGGYKYEVYSRSMNERA 638


>gi|149186785|ref|ZP_01865096.1| diguanylate cyclase with PAS/PAC sensor [Erythrobacter sp. SD-21]
 gi|148829693|gb|EDL48133.1| diguanylate cyclase with PAS/PAC sensor [Erythrobacter sp. SD-21]
          Length = 362

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 61/180 (33%), Positives = 80/180 (44%), Gaps = 10/180 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
           Y       E      R  + +  D L+ L N  + ++ L           E LS++ FD+
Sbjct: 183 YALLRDRDEAIAQAERAKKEAETDALTELANRRSVMAELDRAVVRARQDGESLSVIVFDV 242

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK +ND  GHP GD+V+  +             VGR+ GEEF         Q A   A
Sbjct: 243 DHFKHVNDRHGHPAGDRVLGMIGKIAARQARERDVVGRIRGEEFLWIMPSCDVQSALRAA 302

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR  IE       S P   +TISAG AE    +   T+  RAD ALY AK+ GRNRV 
Sbjct: 303 ERLRWAIEAG---THSAPVPSVTISAGHAELQDGDAALTLFARADTALYNAKREGRNRVA 359


>gi|146337630|ref|YP_001202678.1| hypothetical protein BRADO0495 [Bradyrhizobium sp. ORS278]
 gi|146190436|emb|CAL74435.1| conserved hypothetical protein with PAS, GGDEF and EAL domains;
           putative membrane protein [Bradyrhizobium sp. ORS278]
          Length = 1046

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 94/223 (42%), Gaps = 12/223 (5%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           +   TP  GL YI    +++   +     L+  +  +   E  ++  +I+ L+  D L+ 
Sbjct: 566 HAWQTPGLGLRYITSRRITIEDEAQRPRYLINVMEDT--TERRLADEKIAHLAHFDALTE 623

Query: 112 LLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           L N   F   +    E+       ++++ D+D FK IND+ GH VGD+++  ++ ++   
Sbjct: 624 LPNRVLFRERIDEEIERVRHGTFFALLYIDVDEFKGINDSLGHHVGDELLKTIARRIESC 683

Query: 166 FGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
            G    V RLGG+EFA      + + E  ++  ++   I      +  G  +    S GI
Sbjct: 684 LGPEDMVARLGGDEFAVLLTTAADQDEVVVVVTEILDTIRKPYRCL--GHQLSTDASIGI 741

Query: 225 AERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           A           +   AD A+Y AK  GR     F    +   
Sbjct: 742 ALAPRDGTERDQLTKHADLAMYAAKAGGRRTFRFFEPSMDENA 784


>gi|83643744|ref|YP_432179.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631787|gb|ABC27754.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 469

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 82/179 (45%), Gaps = 13/179 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQI 142
           L EL  + + + +L+  D L+G+ N   F               E LS++  DID FK+ 
Sbjct: 282 LLELVRNRDLLKKLTLTDALTGVPNRRNFQEVYRREWFRACRAREPLSLIMIDIDNFKRF 341

Query: 143 NDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GHP GD  +  ++  +  V      FV RLGGEEF      +  +     A+ +  
Sbjct: 342 NDFYGHPAGDACLQKVAKMIYQVRKRNTDFVARLGGEEFVVILPDTDAEGGQRFADAMLN 401

Query: 202 IIENSQI--NISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVV 256
            +    I    + G  I +TISAG+        I    ++  AD+ LY AKK GRNRV 
Sbjct: 402 AVRKLAIAHEHNDGKKI-VTISAGLVTCYPGPHISRENLLSTADECLYQAKKEGRNRVC 459


>gi|28900331|ref|NP_799986.1| hypothetical protein VPA0476 [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838993|ref|ZP_01991660.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus
           AQ3810]
 gi|260363666|ref|ZP_05776459.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus K5030]
 gi|260880900|ref|ZP_05893255.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus
           AN-5034]
 gi|260896042|ref|ZP_05904538.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus
           Peru-466]
 gi|260903094|ref|ZP_05911489.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus
           AQ4037]
 gi|28808642|dbj|BAC61819.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747537|gb|EDM58473.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus
           AQ3810]
 gi|308087071|gb|EFO36766.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus
           Peru-466]
 gi|308091587|gb|EFO41282.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus
           AN-5034]
 gi|308107778|gb|EFO45318.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus
           AQ4037]
 gi|308114453|gb|EFO51993.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus K5030]
 gi|328470288|gb|EGF41199.1| hypothetical protein VP10329_05807 [Vibrio parahaemolyticus 10329]
          Length = 355

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 82/173 (47%), Gaps = 9/173 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145
           L I   ++  L+  D L+G+ N   F+  +            K  +   D+D FK++ND 
Sbjct: 172 LHIQIMKMEHLATTDDLTGIPNRREFMRQIEHRLSEFRTQGIKFHVAILDLDNFKKLNDK 231

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GDK +   ++ +         + R+GGEEFA      S QEA      +R  +E 
Sbjct: 232 FGHDAGDKSLIHAANTIKGHLRECDLLARVGGEEFAIVLRSRSSQEAMDTLETIRNALET 291

Query: 206 SQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
           + I  S G  +  T S G+ + C   +    ++ RAD ALY AK++GRNRV  
Sbjct: 292 TTIRYS-GRDMTFTASIGVTQVCGLDDSFEPLVKRADLALYKAKETGRNRVEI 343


>gi|134292522|ref|YP_001116258.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
 gi|134135679|gb|ABO56793.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
          Length = 413

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 105/231 (45%), Gaps = 10/231 (4%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           F+  +  IA    F         L +    N+ L++ +  I   L   S  ++ ++ ++ 
Sbjct: 183 FLFALCQIARGIYFMTLDEASSPLMFASTGNVILLVAAAAIMPTLSMSSMMMVHDVLLAD 242

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R  + +  D L+G L+   F       ++  G      +++  D+D+FK IND  GH  
Sbjct: 243 AR--EAANRDFLTGALSRKGFEAVAHVQLAEAGKQGSPTALLILDLDHFKAINDTLGHAG 300

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+        +       +GR+GGEEFA     ++  +A  +A  LR  +    +  
Sbjct: 301 GDAVLREFVRVTQMQLRRGDVLGRMGGEEFAVLLPATALDDARAIAERLRHAVAAQPMTT 360

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           ++GP    +IS G+A     E +  +  RAD ALY AK+SGRNRV    D+
Sbjct: 361 AAGP-CRYSISCGVAGWRAGETLDHLSARADAALYEAKRSGRNRVCLHGDL 410


>gi|315443831|ref|YP_004076710.1| diguanylate cyclase with PAS/PAC sensor [Mycobacterium sp. Spyr1]
 gi|315262134|gb|ADT98875.1| diguanylate cyclase with PAS/PAC sensor [Mycobacterium sp. Spyr1]
          Length = 849

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 81/178 (45%), Gaps = 11/178 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFK 140
            +     +   +  L+  D L+GL N +  +  +              + +++ D+D FK
Sbjct: 665 DITSRKRAEAELQHLALHDPLTGLANRALLVDRVEQAIADIGRHAPACVGLLYLDLDGFK 724

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDL 199
            +ND +GH  GD+V+  ++ ++           RLGG+EFA       + EA   +A  +
Sbjct: 725 PVNDTWGHAAGDEVLNAVARRIENSIRPGDTAARLGGDEFAVLCPVIKDSEALHGIAERI 784

Query: 200 RKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R+ +    + + +G +   ++ S G A         ++I   D+ +Y AK++G++RV 
Sbjct: 785 RREVRR-PLRLRAGRTYDRLSASIGAATSAGNGNAESLIAHTDRLMYRAKRNGKDRVA 841


>gi|295703187|ref|YP_003596262.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium DSM 319]
 gi|294800846|gb|ADF37912.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Bacillus
           megaterium DSM 319]
          Length = 657

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 19/218 (8%)

Query: 58  FYGLEYILVENLSLVIISITISLL-------LGYIS-GSILKELFISYNRISQLSRIDCL 109
           + G   +  ++  L  +S TI  L         Y+S  + + E     N++   +  D L
Sbjct: 440 WRGELEMWTKHNQLYWVSNTIVPLKDIDGNITYYVSIHNDITEQKALENKLHFEATHDSL 499

Query: 110 SGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +GL N +  +  L    EK         +++F D D FKQIND +GH +GD+ +   + +
Sbjct: 500 TGLPNRAMLLKELNKVIEKGQQKSDEFFALLFLDCDNFKQINDEYGHHIGDEFLKAYTKR 559

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L         + RLGG+EF      ++ +E   +A  +   +   Q     G  +  T +
Sbjct: 560 LKSCVRKGDRIYRLGGDEFIIILNVTNGREIEQIARRIH--VSLQQSWNVRGYCLRTTTT 617

Query: 222 AGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            G++      E  ++++  AD ALY  K+ G+N  + +
Sbjct: 618 IGVSIYPEDGESAASLLKNADDALYKGKREGKNNYILY 655


>gi|320008411|gb|ADW03261.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces flavogriseus ATCC 33331]
          Length = 977

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 16/194 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKL-SIVFFDI 136
            ++   + E      ++   +  D L+ L N + F + +G         +   +++F D+
Sbjct: 492 LLNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTTRVGQALGGRRAGDPGTAVLFIDL 551

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAI- 194
           D FK +ND+ GH  GD+++   + +L     T     RLGG+EFAA  +G  +  +AA  
Sbjct: 552 DGFKAVNDSVGHQAGDELLVQAARRLQESVRTSDTAARLGGDEFAALIVGDGTRDQAARE 611

Query: 195 -----LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
                +A+ LR  +  SQ        + +  S G+A          ++  AD A+Y AK 
Sbjct: 612 YQVHEIADRLR--LRLSQPYRIGTGEVRVAASIGVAFAEPSITPKDLMRNADLAMYRAKA 669

Query: 250 SGRNRVVCFSDIEN 263
           +G+ RV  ++    
Sbjct: 670 NGKGRVELYAPQMQ 683


>gi|251778364|ref|ZP_04821284.1| ggdef/hd domain protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082679|gb|EES48569.1| ggdef/hd domain protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 569

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 109/239 (45%), Gaps = 19/239 (7%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY---ISGSILKELF 94
            I   I    I    I + P   +     ++L L  I I  +  LG+   I G  +K   
Sbjct: 132 LIVAGISSFIILTMDIIMLPNAEVNVYFQDDLVLAGIFILTAWPLGFYVKIEGEHIKN-- 189

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
                +  +  ID L+ L NH  F  SL         YN+ ++++F DIDYFKQ ND  G
Sbjct: 190 -----LEDMINIDGLTELYNHRYFCDSLVENVKSGEEYNKPVAMIFIDIDYFKQYNDING 244

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  +   +           R GGEEF+     ++E++A  +A +LRK IE + 
Sbjct: 245 HQKGDYVLKKIGKIIKENSRKEDIPARYGGEEFSIILPETNEEKALNIAENLRKSIETAY 304

Query: 208 IN-ISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDIENN 264
                + P+  +T+S G++   +K      +I  AD ALY AK   +NRV  ++ I + 
Sbjct: 305 FEGEENQPNGKVTVSIGVSVYPYKAKNDVELIKSADDALYRAKFFYKNRVEVYTSILDE 363


>gi|217969750|ref|YP_002354984.1| diguanylate cyclase [Thauera sp. MZ1T]
 gi|217507077|gb|ACK54088.1| diguanylate cyclase [Thauera sp. MZ1T]
          Length = 565

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
           G  L EL      +  L+R D L+GL N + F   +          +  L+++F DID F
Sbjct: 388 GQQLAELEHRRRELEHLARHDALTGLPNRALFDDRMAVALASARRDDGGLALLFVDIDDF 447

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND  GH VGD+V+  ++ ++           R+GG+EF     G  S ++A ++A+ 
Sbjct: 448 KPINDRLGHVVGDRVLEGVAARIRQSIRESDTAARIGGDEFVVLLPGIASAEDARVVADK 507

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           +R  I+  +  +  G  + +++S G+A         +T+   AD A+Y  K  G+ R
Sbjct: 508 IRAAID--RPFMIDGGELAVSVSMGLAHYPQDGSDSTTLARHADAAMYRDKAEGKAR 562


>gi|218440034|ref|YP_002378363.1| diguanylate cyclase [Cyanothece sp. PCC 7424]
 gi|218172762|gb|ACK71495.1| diguanylate cyclase [Cyanothece sp. PCC 7424]
          Length = 387

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 75/241 (31%), Positives = 118/241 (48%), Gaps = 17/241 (7%)

Query: 33  IFFSIFIATVIFI--ANIFLFYIGLTPFYGLEYILVEN-LSLVIISIT---ISLLLGYIS 86
           +  SI    ++F+  A++FL  I +         L +N LS  ++ I+   +S LL    
Sbjct: 147 LIISIRFTAIVFLCSASLFLIRIIVVLLNNYSNPLFDNSLSQTLLQISYLIMSFLLTVGL 206

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            S++ +    Y  +  L+  D L+  LN  A        I+      E+ +++  DID F
Sbjct: 207 VSMISQRL--YEDLRTLAIYDFLTETLNRRAMQLEINKEIAYFNRRKEQFALILMDIDRF 264

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K INDN+GH  GD V+   +  +         +GR GGEEF   + GS+ ++A ILA  L
Sbjct: 265 KSINDNYGHDCGDLVLQHFTRTIKNNIRKEDALGRWGGEEFLILSRGSNVEDALILAERL 324

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           R  IE+ ++ I+    I  T+S G+A    H      ++  AD+ALY AK SGRN+V   
Sbjct: 325 RSAIESEKV-ITGHTIIKYTLSLGVAVYGIHGTTQEQLVKAADKALYEAKNSGRNQVAIA 383

Query: 259 S 259
           +
Sbjct: 384 T 384


>gi|194451887|ref|YP_002044417.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194410191|gb|ACF70410.1| AdrA protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
          Length = 370

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 12/232 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            F++ +  ++    + L   GL P       L   LSL +I I   LL  ++S     +L
Sbjct: 141 LFTVGMGLLLASCLVTLQLTGL-PVAMRSSSLEVTLSLPVI-ILYPLLFAWVSYQTAIKL 198

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
                R+  +S  D ++G+ N   +             ++ + +++  DID+FK IND +
Sbjct: 199 AEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFDHSRRHHREATLLIIDIDHFKSINDTW 258

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ I  L+ QL +       +GR GG+EFA    G+    A    + + + +   
Sbjct: 259 GHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEFAVIMCGTPADSAITAMSRVHERLNTL 318

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++     P + + IS G+A    +       +  AD ALY AK +GRNR   
Sbjct: 319 RLP--GAPQVMLRISVGVAPLTPQIGHYREWLKSADMALYKAKNAGRNRTEV 368


>gi|144897841|emb|CAM74705.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Magnetospirillum gryphiswaldense MSR-1]
          Length = 556

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 62/172 (36%), Positives = 82/172 (47%), Gaps = 8/172 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
                  +  L   D L+GL NH+         ++S    +  L  V  D+D+FKQ+ND 
Sbjct: 384 RAERMRTLRSLMVRDSLTGLFNHTFMSQFLETSLASARRDDGMLCFVMIDVDHFKQVNDT 443

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GHP GD+V+  L+  L         VGR GGEEFA         EA+ + +DLR     
Sbjct: 444 YGHPAGDQVLVALARLLQQRLRNSDMVGRYGGEEFAVILQDIGTDEASRIVDDLRADFAK 503

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +     G     T SAGIA    K     ++  ADQALYVAKKSGRN+V  
Sbjct: 504 VRFTAGDG-DFSCTFSAGIAGYPGKAQADLLLESADQALYVAKKSGRNQVQV 554


>gi|77360112|ref|YP_339687.1| GGDEF protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76875023|emb|CAI86244.1| conserved protein of unknown function ; putative GGDEF family
           protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 962

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 85/174 (48%), Gaps = 7/174 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L    N  +  +  D L+ + N  AF S L          N+ L+I   DID+FK++N
Sbjct: 788 QDLQEQANAFAYQATHDQLTDMPNRRAFDSWLAANFATYKQQNKILAIAIMDIDHFKRVN 847

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D + H VGDKVI  ++  L         V R GGEEF       +  EA ++   LR+ I
Sbjct: 848 DGWSHIVGDKVICEIAKILKSHCEGEQQVARWGGEEFTLVFPNKTAAEAKLMCELLREEI 907

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            N+  ++ +     +T S G+++  + +    ++  ADQALY AK  GRNR   
Sbjct: 908 ANNDFSVIAAGLHQVTASFGVSDSNNIDDYDRLLSGADQALYKAKNGGRNRTEI 961


>gi|126456988|ref|YP_001075141.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106a]
 gi|167849102|ref|ZP_02474610.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei B7210]
 gi|242313043|ref|ZP_04812060.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106b]
 gi|126230756|gb|ABN94169.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106a]
 gi|242136282|gb|EES22685.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106b]
          Length = 688

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 65/215 (30%), Positives = 100/215 (46%), Gaps = 15/215 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRIS----QLSRIDCLSGLLNHSAFIS 120
           L   ++L  ++I I  L+          L  S +R+S    +++  D L+ L N      
Sbjct: 214 LAATVALFTVAILIVALILSHFDVRTTLLAGSVSRLSGQIVRMAAFDTLTDLPNRRTLNE 273

Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            LG           KL+I+F D+D FK IND+ GHP GD+V+   S +L+        V 
Sbjct: 274 HLGRALAAARARGGKLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVA 333

Query: 174 RLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           RLGG+EF       SS+ EAA +A D+ + +   + N   G ++ +T S GIA      +
Sbjct: 334 RLGGDEFVVLLESVSSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGD 391

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              T++  AD A+Y AK+ GR     F    +   
Sbjct: 392 TADTLLRHADAAMYAAKRGGRCTYRFFEATMDEAA 426


>gi|238797366|ref|ZP_04640866.1| phosphodiesterase [Yersinia mollaretii ATCC 43969]
 gi|238718797|gb|EEQ10613.1| phosphodiesterase [Yersinia mollaretii ATCC 43969]
          Length = 864

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 10/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           S+  E   S  +I  L+  D L+GL N S F       I+        L+++  ++D FK
Sbjct: 421 SLAMEREQSRKQIQHLAFYDSLTGLPNRSHFQVYAKQAIALATEMGHTLALLVINLDRFK 480

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND+ GH  GD++++ ++ +L         +GRL G+EF       + Q+A +    + 
Sbjct: 481 QVNDSLGHAAGDELLSSIAQRLRNDLAKSDLIGRLSGDEFIIILAPCTLQQATVKVEKIL 540

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++  SQ    +  +I  + S GI+        + T++  AD AL+ AK  GR     FS
Sbjct: 541 SLL--SQPCQITNVNIIPSASIGISLYPENGLDMDTLMNHADIALHKAKNMGRGHFNFFS 598

Query: 260 DIENN 264
              NN
Sbjct: 599 AEMNN 603


>gi|326319484|ref|YP_004237156.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323376320|gb|ADX48589.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 579

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 87/197 (44%), Gaps = 8/197 (4%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSL 122
           + ++ VI ++            + +E      ++ + S  D L+GL N  AF       +
Sbjct: 379 DEIAAVIGAVRALQEHTQARQVLERERDGLIAQLREQSLTDFLTGLPNRRAFFAAARERV 438

Query: 123 GSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
               ++   ++++  D+D FK  ND  GH  GD+ +  ++  +         V R GGEE
Sbjct: 439 AQARQQRFDVALMLLDVDLFKSFNDRAGHAAGDEALRAVARAVRNTLRPGDLVARYGGEE 498

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIY 238
           F       +  E A  A  LR  IE + + + SG    +T S G+A    H   +  ++ 
Sbjct: 499 FVVLLGPCAGPEGAACAERLRHAIETAPVILPSGERFRLTASVGVAVSQRHGLVLDHLLS 558

Query: 239 RADQALYVAKKSGRNRV 255
            AD ALY AK  GRNRV
Sbjct: 559 EADTALYRAKDRGRNRV 575


>gi|229514994|ref|ZP_04404454.1| GGDEF family protein [Vibrio cholerae TMA 21]
 gi|229347699|gb|EEO12658.1| GGDEF family protein [Vibrio cholerae TMA 21]
          Length = 353

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 69/265 (26%), Positives = 112/265 (42%), Gaps = 29/265 (10%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           IW C       F P  F I+ S  F+   + +  I    + Y          + L +  +
Sbjct: 98  IWSC-------FVPILFYIFTSARFAFVTSCLFLIIQSNIIY----------WQLQQTGA 140

Query: 71  LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSY 125
            +  S+ + L   YI   ++  ++    R     +  L+  D L+G  N  +  +S   +
Sbjct: 141 AISWSVLLHLCFAYIGIWVVAHVYEDNRRKIENSLLYLASRDPLTGAHNRLSLTTSFQHF 200

Query: 126 NE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   L ++  D+D+FK IND FGH  GDKV+   +     V G    + R+GGEEF
Sbjct: 201 ERFSDQTSLCLLVIDLDFFKSINDQFGHDTGDKVLIETTRLFTQVVGDNN-LYRIGGEEF 259

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                  S ++A  +   LR I+            + +TIS G+ E    + ++ ++  A
Sbjct: 260 CVTLFDQSLEQAGRVCERLRAIVSQHLFAFGE-KRVQVTISIGVCEYQAGDQLNDLLKFA 318

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D  LY AKK+GRN+V  F     N 
Sbjct: 319 DMELYRAKKAGRNQVRLFRHASTNA 343


>gi|83312701|ref|YP_422965.1| GGDEF domain-containing protein [Magnetospirillum magneticum AMB-1]
 gi|82947542|dbj|BAE52406.1| FOG: GGDEF domain [Magnetospirillum magneticum AMB-1]
          Length = 598

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 83/192 (43%), Gaps = 19/192 (9%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDID 137
           I+   + +   +  R+  L+  D L+G+ N  AF  +LG            LS++  D+D
Sbjct: 403 IAHQNISQRKEAELRLRHLAMNDGLTGIANRRAFDETLGQEWRRASRAGTPLSLLMIDVD 462

Query: 138 YFKQINDNFGHPVGDKV-IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           +FK  ND++GH  GD+   A  +            V R GGEEF      S+  +A  LA
Sbjct: 463 HFKAYNDHYGHQAGDECLKAVAATLAATAKRPADLVARYGGEEFGVILPSSTLADAQALA 522

Query: 197 NDLRKIIENSQINISSGP-SIHITISAGI----------AERCHKEPISTIIYRADQALY 245
             +R  I   ++   +      +TIS G+          A   +      +I  AD ALY
Sbjct: 523 EKMRLAIARLELPHEASQTEKTVTISIGVSCLNLAESPGALPRNGLDTQILIAHADNALY 582

Query: 246 VAKKSGRNRVVC 257
            AK +GRNRV  
Sbjct: 583 RAKTTGRNRVTA 594


>gi|300690703|ref|YP_003751698.1| signal transduction ggdef domain transmembrane protein [Ralstonia
           solanacearum PSI07]
 gi|299077763|emb|CBJ50401.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum PSI07]
          Length = 551

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 9/191 (4%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------ 124
           LV+ S+        ++  + + L  + + ++  +  D L+G+L    F++   +      
Sbjct: 359 LVVWSLMRERQHHRVTRHLNQRLQRTNSALANEAHFDHLTGVLTRRRFLALFETVLTRTH 418

Query: 125 -YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
              E+L +V  D+D+FK+IND +GH VGD  +   +     V  +   +GRLGGEEFA  
Sbjct: 419 VRGEQLVLVLADLDHFKRINDTWGHAVGDLALQRFASLATNVMRSSDLIGRLGGEEFAVV 478

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              ++ ++AA +   LR  +  +  ++ SG  + +T+S G+      +  S ++ RAD A
Sbjct: 479 MSRTTLEDAAGVVERLRAAVAEADESLPSG--LAMTVSLGMTACRPGDTASEMLRRADLA 536

Query: 244 LYVAKKSGRNR 254
           LY AK+SGRNR
Sbjct: 537 LYRAKESGRNR 547


>gi|296136609|ref|YP_003643851.1| response regulator receiver modulated diguanylate cyclase
           [Thiomonas intermedia K12]
 gi|295796731|gb|ADG31521.1| response regulator receiver modulated diguanylate cyclase
           [Thiomonas intermedia K12]
          Length = 630

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 13/178 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
             L+ L      + Q +  D L+G+ N  A  +          +  + L+ + FD+D FK
Sbjct: 447 RTLRTLEQRNAELLQAAGTDELTGVGNRRALDAFLPPLFAQAAAEGQPLACLMFDLDEFK 506

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND  GH VGD+ +  +   L        FV R+GGEEF      ++E+ A  +A  +R
Sbjct: 507 RINDRLGHDVGDQALRAVGRVLRQQSRGMDFVARVGGEEFLMLCPQTTEEAAMRVAERIR 566

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
             I   Q ++       +++S G+A         +++I  ADQAL  AK+ GRNRV  
Sbjct: 567 AAIAVPQADLP-----PLSVSVGVALGAAGFADAASLIRAADQALLQAKRLGRNRVCL 619


>gi|206969232|ref|ZP_03230187.1| sensory box/GGDEF family protein [Bacillus cereus AH1134]
 gi|206736273|gb|EDZ53431.1| sensory box/GGDEF family protein [Bacillus cereus AH1134]
          Length = 828

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 10/205 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           IL   +++V I I       Y+    +  +      I+ L+  D ++ + N   F   L 
Sbjct: 361 ILFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELD 420

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     +K  +++ D++ FK IND  GH +GDKV+  ++ +        + + R+G
Sbjct: 421 RSIKRAQKTQDKFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIG 480

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           G+EFA      +EQ+   L   L +I E  +  + +  S ++++S GIA         +T
Sbjct: 481 GDEFAIIVHNQTEQQLLDLCKTLFRITE--EPFVVNQHSFYLSLSIGIAVYPFGGINTTT 538

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++  AD A+Y AK+ G N V  + +
Sbjct: 539 LLQHADIAMYSAKEKGNNAVCMYDE 563


>gi|168239417|ref|ZP_02664475.1| bacterial signalling protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194737523|ref|YP_002116336.1| ggdef domain/eal domain-containing protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|194713025|gb|ACF92246.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197287899|gb|EDY27287.1| bacterial signalling protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 699

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 64/273 (23%), Positives = 115/273 (42%), Gaps = 21/273 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIA--------NIFLFYIGLTPFYGL 61
           ++WL      E           ++   I IA + +          N  + + G+   +  
Sbjct: 156 ALWLTFRLRHEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLA 215

Query: 62  EYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
             + V  L+++ I++ +SL    +      +   L  +   ++QL+  D L+ L N    
Sbjct: 216 VLVSVVALTILGITLLVSLFDARLQARTALLASSLAQANQELAQLALHDTLTRLPNRVLL 275

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L          N   +++F D+D FK +ND +GH +GDK++  ++ +L         
Sbjct: 276 EDRLEQAISKANRENTSFALLFMDLDGFKAVNDAYGHDIGDKLLVAVTHRLNQPLSGQFT 335

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF   A  S+  EAA LA+ L   I+           + +T+S GIA      
Sbjct: 336 LARIGGDEFVLLAEVSAPDEAASLASALVHSIDA--PFTIDPYELVVTLSVGIALYPLDG 393

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +    +++ AD A+Y  K +GRN    F    N
Sbjct: 394 KNERELMFNADAAMYHTKHTGRNGYHFFQPSMN 426


>gi|77460305|ref|YP_349812.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1]
 gi|77384308|gb|ABA75821.1| putative GGDEF domain sensory box protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 308

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 89/185 (48%), Gaps = 14/185 (7%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
            +S LL  +  ++L      Y   +Q +  D L+G  N  A   +L         + + L
Sbjct: 126 LLSALLYPMRNALL------YRAATQSALRDPLTGAGNRIAMEQTLHREIEMSRRHLQPL 179

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++  DID+FKQ+ND  GH  GD V+  ++  +         V R GGEEF      +  
Sbjct: 180 SLLMLDIDHFKQVNDLHGHSAGDDVLKAVAASIKGQLRNVDMVFRYGGEEFLILLSNTGR 239

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
             AA++   LR+    +Q   ++   I +T+S G +     E   +++ RAD ALYVAK+
Sbjct: 240 DAAAMVGERLRQA-AQAQDYYANNQLIELTVSLGCSTLLPGESADSLLRRADSALYVAKR 298

Query: 250 SGRNR 254
            GRNR
Sbjct: 299 EGRNR 303


>gi|330877047|gb|EGH11196.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 308

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 8/170 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y   +Q +  D L+   N  A   SL         + + LS++  DID+FK++ND +GH 
Sbjct: 140 YRIATQTALRDPLTSTGNRIAMDQSLAREIEISSRHKQPLSLLMLDIDHFKKVNDEYGHH 199

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  L         V R GGEEF      +    A ++   LR+ + N +  
Sbjct: 200 TGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGATAAELIGERLRQAVRNLEFR 259

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               P++ +T+S G +     E   +++ RAD ALYVAK+ GRNR+   S
Sbjct: 260 ELD-PALTMTVSLGCSTLLPTETADSLLRRADNALYVAKREGRNRLAMAS 308


>gi|261211720|ref|ZP_05926007.1| GGDEF domain protein [Vibrio sp. RC341]
 gi|260839070|gb|EEX65702.1| GGDEF domain protein [Vibrio sp. RC341]
          Length = 352

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 70/262 (26%), Positives = 113/262 (43%), Gaps = 30/262 (11%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           +W C       F P  F I+ S  F+         + +FL   G   ++        N  
Sbjct: 98  VWSC-------FVPILFYIFTSTRFAFLT------SGLFLILQGSVVYWQSH-----NDP 139

Query: 71  LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSY 125
            +  SI +     YI   ++  ++    R     +  L+  D L+G  N  +  +S   +
Sbjct: 140 SISGSILLHFCFAYIGLWVVAHVYEENRRKIENSLLYLASRDPLTGAHNRLSLTTSFHHF 199

Query: 126 NE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            +      LS++  D+D+FK IND +GH  GDKV+   +  L  V G    + R+GGEEF
Sbjct: 200 EQFSDQTSLSLLVIDLDFFKLINDQYGHDTGDKVLVETTRLLAQVVGDSN-LYRIGGEEF 258

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                  S ++A  +   LR II            + +TIS G+ E    + ++ ++  A
Sbjct: 259 CVTLFDQSLEQAEKVCERLRTIISQHLFAFGD-KRVQVTISIGVCEYQPGDQLNDLLKFA 317

Query: 241 DQALYVAKKSGRNRVVCFSDIE 262
           D  LY AKK+GRN+V  F   +
Sbjct: 318 DIELYRAKKAGRNQVRLFQHAQ 339


>gi|239618376|ref|YP_002941698.1| diguanylate cyclase [Kosmotoga olearia TBF 19.5.1]
 gi|239507207|gb|ACR80694.1| diguanylate cyclase [Kosmotoga olearia TBF 19.5.1]
          Length = 899

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 99/185 (53%), Gaps = 16/185 (8%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVF 133
           L+GY+   +L  +F +Y R + ++  D L+GL     F S L         + E+ S++ 
Sbjct: 717 LMGYLEP-LLTLVFRNYMRYT-MATKDALTGLYTRWYFESRLEEEFARSKRFGEEFSVIM 774

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK +ND+ GH VGD+++  ++  L+        VGR GGEEF      +  ++A 
Sbjct: 775 CDLDNFKVVNDSHGHIVGDEILKKIAKILLKGAREMDIVGRYGGEEFIILLPYAKHRDAV 834

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSG 251
            +A  L+++IE ++ ++       +T S G+A     H    + +++ ADQ  Y+AKK G
Sbjct: 835 RVAERLKELIEANKESLKD-----VTASFGVASYPAPHINNAADLLFCADQRCYLAKKLG 889

Query: 252 RNRVV 256
           +NRVV
Sbjct: 890 KNRVV 894


>gi|254458357|ref|ZP_05071782.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207084665|gb|EDZ61952.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 422

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 91/197 (46%), Gaps = 11/197 (5%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
           E  SL I    I+ L   I+ + + +L             D L+G+ N   F   +    
Sbjct: 227 EEKSLYINISKINDLNYLINFTDITKLTQEKEATELKLYQDSLTGINNREKFEEVIYYEL 286

Query: 123 ---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                YN  LS+   DID FK  ND +GH +GD+V+  LS+++           R GGEE
Sbjct: 287 KQSKRYNRSLSLAILDIDKFKDFNDTYGHLIGDEVLIMLSEEIQKHTRESDLFARWGGEE 346

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F      ++ Q A  LA + R+IIE  +   +      +T+S G+ E    + + ++  R
Sbjct: 347 FVLLFSNTNLQNAMNLAENFRQIIEKLKHKSAG----SVTVSFGLTEYKKGDTLKSMFKR 402

Query: 240 ADQALYVAKKSGRNRVV 256
           AD ALY AK SGRN + 
Sbjct: 403 ADDALYEAKNSGRNCIR 419


>gi|332527196|ref|ZP_08403268.1| response regulator [Rubrivivax benzoatilyticus JA2]
 gi|332111620|gb|EGJ11601.1| response regulator [Rubrivivax benzoatilyticus JA2]
          Length = 350

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 57/214 (26%), Positives = 88/214 (41%), Gaps = 8/214 (3%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           +  L P Y  + +L   +   ++  +   LLG   G +L     +   +  L+  D L+G
Sbjct: 128 HAALNPSYYTDPMLPGGMQAALLLTSFVALLGSGFGFVLACTERATRSLEHLASHDHLTG 187

Query: 112 LLNHS----AFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
            LN         ++L         ++ V  D+D FK IND  GH  GD+V+   +  +  
Sbjct: 188 ALNRQPAELLLTNALQRARRDRSTVAYVLIDLDRFKSINDRHGHVFGDEVLRRFAQTVDA 247

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                    R GGEEF      S    A  +  +LR+      +    G    +T SAG+
Sbjct: 248 RLRATDVFSRCGGEEFGLVLPDSDAAGALGVVEELRQACAAMGLMTDDGCPFVLTFSAGV 307

Query: 225 AERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           A           +   AD+ALY AK +GR+RVV 
Sbjct: 308 ALSPSGRVGAEALYRNADRALYEAKHAGRDRVVL 341


>gi|327396635|dbj|BAK14056.1| phytochrome-like protein Cph2 [Pantoea ananatis AJ13355]
          Length = 480

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 97/212 (45%), Gaps = 23/212 (10%)

Query: 65  LVENLSLVIISITISLLLGYISGSILK----------ELFISYNRISQLSRIDCLSGLLN 114
           +V +L L++  I + +L+ + +   L+          EL  + + +  L+  D L+GL N
Sbjct: 265 VVLSLVLLMAIILLWMLIRHEAKRSLRYQIELTHLRDELTEANHSLENLANGDGLTGLAN 324

Query: 115 HSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VF 166
              F   L        S    +S++ FDIDYFK+ ND +GH  GD  +  +   L     
Sbjct: 325 RRYFDHFLIKSLLHGRSSGGPVSLILFDIDYFKRYNDTYGHVAGDACLQQVGRLLKTFAQ 384

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG--PSIHITISAGI 224
                  R GGEEFA     +   +A  +A+ + + +    I  SS    +  +T+SAG+
Sbjct: 385 RRIDIAARYGGEEFAIVLADTCAADALKIASSVVEAVRKLAIPHSSTGLETGCVTLSAGV 444

Query: 225 AERCHKEP---ISTIIYRADQALYVAKKSGRN 253
           A     E       +I RAD+ALY AK  GRN
Sbjct: 445 ATTVAGEGPERAERLIKRADEALYRAKHEGRN 476


>gi|229097965|ref|ZP_04228915.1| Sensory box/GGDEF [Bacillus cereus Rock3-29]
 gi|228685402|gb|EEL39330.1| Sensory box/GGDEF [Bacillus cereus Rock3-29]
          Length = 815

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 98/205 (47%), Gaps = 10/205 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----- 118
           IL   +++V I I       Y+    +  +    + I+ L+  D ++ + N   F     
Sbjct: 348 ILFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELE 407

Query: 119 --ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
             I       ++L +++ D++ FK IND  GH +GD+V+  ++++        + + R+G
Sbjct: 408 KSIKRAQKTQDELGLLYIDLNRFKTINDTLGHSIGDRVLKEVANRFRTCLSPTIPLARIG 467

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           G+EFA      +EQ+   L   L +I E  +  + +  S ++++S GIA         +T
Sbjct: 468 GDEFAIIIHNQTEQQLLDLCETLFRITE--EPFVVNQHSFYLSLSIGIAVYPFGGINTTT 525

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++  AD A+Y AK+ G N V  + +
Sbjct: 526 LLQHADIAMYSAKEKGNNAVCMYDE 550


>gi|206901960|ref|YP_002250285.1| sensory box/ggdef family protein [Dictyoglomus thermophilum H-6-12]
 gi|206741063|gb|ACI20121.1| sensory box/ggdef family protein [Dictyoglomus thermophilum H-6-12]
          Length = 300

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 8/170 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
             L     ++ +L+ ID L+G+LN           I++     +   ++F DID FK+IN
Sbjct: 126 TNLKKELEKLRELTYIDELTGVLNRRGLNFFLRKQINNFKKNKKAFGVLFMDIDNFKEIN 185

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGDKV+  LS+ L     T   V R GG+EF              L   ++ +I
Sbjct: 186 DRYGHNVGDKVLKMLSETLKNNLRTEDMVARYGGDEFVVILQVGDINTLESLTKRIKNLI 245

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           ENS +   +G  I IT+S G       + ++T++ RAD+ +Y +KK G+N
Sbjct: 246 ENSFLE-EAGRIIKITVSVGGTLIRENDTMNTLLKRADELMYQSKKEGKN 294


>gi|194447535|ref|YP_002047416.1| ggdef domain/eal domain-containing protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|205359457|ref|ZP_02670140.2| bacterial signalling protein N repeat [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194405839|gb|ACF66058.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205336035|gb|EDZ22799.1| bacterial signalling protein N repeat [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 699

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 64/273 (23%), Positives = 115/273 (42%), Gaps = 21/273 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIA--------NIFLFYIGLTPFYGL 61
           ++WL      E           ++   I IA + +          N  + + G+   +  
Sbjct: 156 ALWLTFRLRHEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLA 215

Query: 62  EYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
             + V  L+++ I++ +SL    +      +   L  +   ++QL+  D L+ L N    
Sbjct: 216 VLVSVVALTILGITLLVSLFDARLQARTALLASSLAQANQELAQLALHDTLTRLPNRVLL 275

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L          N   +++F D+D FK +ND +GH +GDK++  ++ +L         
Sbjct: 276 EDRLEQAISKANRENTSFALLFMDLDGFKTVNDAYGHDIGDKLLVAVTHRLNQPLSGQFT 335

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF   A  S+  EAA LA+ L   I+           + +T+S GIA      
Sbjct: 336 LARIGGDEFVLLAEVSAPDEAASLASALVHSIDA--PFTIDPYELVVTLSVGIALYPLDG 393

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +    +++ AD A+Y  K +GRN    F    N
Sbjct: 394 KNERELMFNADAAMYHTKHTGRNGYHFFQPSMN 426


>gi|124515979|gb|EAY57488.1| Diguanylate cyclase [Leptospirillum rubarum]
          Length = 387

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 50/194 (25%), Positives = 93/194 (47%), Gaps = 11/194 (5%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128
           + +SL LG       +EL  + N +  L+  D L+ L N      SL    E+       
Sbjct: 182 LAVSLGLGLNRYRERQELEAAKNEVEILAFHDALTHLPNRRLLEDSLEGAVERAAHNQVT 241

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L++   D+D FK IND  GH  GD+++   ++++        F+ RLGG+EF     G  
Sbjct: 242 LAVCMLDLDGFKPINDTHGHEGGDQLLLETAERIKGCLRQTDFLARLGGDEFVLLLEGIR 301

Query: 189 EQEAAI-LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALY 245
           ++++   +   +   I+ S + + +G  + +++SAG+      +      ++  ADQALY
Sbjct: 302 DEDSLKGILEKIGTAIQ-SPVRLENGAEVTVSLSAGVCLFPRDQGNNPDVLLRLADQALY 360

Query: 246 VAKKSGRNRVVCFS 259
            +K + +NR   ++
Sbjct: 361 ASKSNKQNRRHFWT 374


>gi|85860641|ref|YP_462843.1| GGDEF domain-containing protein [Syntrophus aciditrophicus SB]
 gi|85723732|gb|ABC78675.1| ggdef family protein / response regulator receiver domain
           [Syntrophus aciditrophicus SB]
          Length = 498

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 15/197 (7%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
           +L +V+  +   ++L       + +L     ++ +LS  D L+ + N   F  +      
Sbjct: 299 SLPVVLARVRTQMML----KQTVADLENLNRKLEKLSLHDGLTNIPNRRCFNETFEREQL 354

Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEE 179
                   LS++  D+D+FK+ ND +GH  GD+V+  ++D L          V R GGEE
Sbjct: 355 RTRRNGMPLSLILLDVDFFKRYNDTYGHEAGDQVLCRVADLLVSATDRGGDMVFRYGGEE 414

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGI--AERCHKEPISTI 236
           F      +    A  +A  +   I+   I +++S  + H+T S GI  A    KE   T+
Sbjct: 415 FVILLPETPAAGARFVAERIHSAIQQLAIPHLTSTVAHHLTASMGIATATPSDKESYYTL 474

Query: 237 IYRADQALYVAKKSGRN 253
             RAD  LY  K SGRN
Sbjct: 475 FERADSQLYKVKASGRN 491


>gi|294140989|ref|YP_003556967.1| sensory box/GGDEF family protein [Shewanella violacea DSS12]
 gi|293327458|dbj|BAJ02189.1| sensory box/GGDEF family protein [Shewanella violacea DSS12]
          Length = 306

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 10/188 (5%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA------FISSLGSYNE-KLS 130
           ++ L+G I    + E     + +++ +  D L+GL N          +  + S  E   +
Sbjct: 122 VAGLIGVIF--DITEQKRLESVLTKQASFDDLTGLFNRREGLKQGEVMHKIASRGEGNFA 179

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D+FKQ+ND  GH VGD+ + F+S  L         + R GGEEF     GSSE 
Sbjct: 180 VLMLDLDHFKQVNDKHGHLVGDRALQFVSKILTDNSRMSDVLIRYGGEEFMIIISGSSED 239

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
            A  LA   R  + N+ + +  G  + +T+S G++   H + +  +I+ AD ALY AK+S
Sbjct: 240 GAGALAEYYRASLANNPMILDDGTELRLTVSIGLSYFRH-QSLGQLIHEADTALYEAKRS 298

Query: 251 GRNRVVCF 258
            RN V  F
Sbjct: 299 NRNTVCSF 306


>gi|289676849|ref|ZP_06497739.1| GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 719

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 87/181 (48%), Gaps = 10/181 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
           +L +L  +   + Q++  D L+ L+N   F        ++       L+++F DID+FK+
Sbjct: 275 LLSQLDQARVSLQQVAHYDPLTNLINRRGFNQIFAEKLQEHTFNKGMLAVMFLDIDHFKR 334

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD+++  +++++         V R GG+EF         +EA  LA+ +  
Sbjct: 335 INDSLGHDAGDELLKVIAERIRSATRAQDVVARFGGDEFCILLSIPDYEEARHLAHRVMH 394

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            ++ +     +G  + +T S GIA           ++  AD ALY +K  GRN V  F+ 
Sbjct: 395 KMKETI--ALAGRRMVMTTSIGIAVFPRDGSTCDELLKHADLALYQSKDKGRNGVNFFNP 452

Query: 261 I 261
            
Sbjct: 453 A 453


>gi|114776871|ref|ZP_01451914.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) and Response Regulator
           [Mariprofundus ferrooxydans PV-1]
 gi|114552957|gb|EAU55388.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) and Response Regulator
           [Mariprofundus ferrooxydans PV-1]
          Length = 719

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 13/189 (6%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVF 133
            LG+++   + E   +  ++ Q++  D L+GL N S +   L          +  ++++F
Sbjct: 258 FLGFMA--DISEHKQNEEKVIQMAYTDLLTGLPNRSLYFDRLKQAIAQSHRNHTTMAVLF 315

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEA 192
            D+DYFK IND  GH  GD+ +  +  +L         + R+GG+EF+       SEQ A
Sbjct: 316 MDLDYFKPINDELGHEWGDQALIEVGKRLQGCIRETDTLARIGGDEFSIILGDIASEQAA 375

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSG 251
             +A+ +   I+  +  + +  S  + IS GI  E        T +  AD A+Y AK++G
Sbjct: 376 CRIADKIISCIQ--EPMLLNHSSYVLGISIGIRIESSDYSDAETFMRLADDAMYQAKEAG 433

Query: 252 RNRVVCFSD 260
           RNR   + +
Sbjct: 434 RNRCCVYRE 442


>gi|34497037|ref|NP_901252.1| GGDEF family protein [Chromobacterium violaceum ATCC 12472]
 gi|34102894|gb|AAQ59258.1| probable GGDEF family protein [Chromobacterium violaceum ATCC
           12472]
          Length = 427

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 89/183 (48%), Gaps = 10/183 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFF 134
           LL     S +  +  S  R+  L+  D L+GL N + F   L  + +      +L+I+F 
Sbjct: 229 LLSVWVVSDISGMKESERRLHALAFFDGLTGLANRALFGERLRWHLQNEPAGGRLAILFL 288

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D++ FKQ+ND  GH  GD+V+  ++ +L           R GG+EFA    G ++   A+
Sbjct: 289 DLNGFKQVNDLLGHEAGDQVLREVARRLQAGCRPGELAARWGGDEFAVLLPGVADD--AV 346

Query: 195 LANDLRKIIENSQIN-ISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGR 252
           LA  LR++ E ++      G  + ++ S G A      E    +I  AD+A+Y AK  G 
Sbjct: 347 LAARLRELREAARAERWGGGRWLRVSASLGAAVYPESAEDAERLIQLADRAMYRAKSEGG 406

Query: 253 NRV 255
            +V
Sbjct: 407 GQV 409


>gi|330721392|gb|EGG99458.1| Sensory box/GGDEF family protein [gamma proteobacterium IMCC2047]
          Length = 572

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 54/198 (27%), Positives = 91/198 (45%), Gaps = 16/198 (8%)

Query: 76  ITISLLLGYISGS-----ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------- 123
           +T S L+  IS S     I + L  S+ ++  L+ +D L+GL N   F S+L        
Sbjct: 107 VTGSRLMRAISHSKERYRIEQALRESHAKLRLLAEVDSLTGLANRYMFESALKDALPLAK 166

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                +++V  D+D FK +ND  GH  GD +++ ++ +L         + RLGG+EFA  
Sbjct: 167 RLKRSVAMVMLDLDKFKYVNDTLGHAAGDVLLSQVAKRLQGPIRDGDLLCRLGGDEFAIL 226

Query: 184 ALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRAD 241
                +  +   L + L   +E        G  + ++ S GI+           ++  AD
Sbjct: 227 IHDLDDVSKVRRLTDRLLSALEA--PFKVEGQELIVSASIGISTYPECASDSIQLMKCAD 284

Query: 242 QALYVAKKSGRNRVVCFS 259
            ALY +K+ GRN+   +S
Sbjct: 285 VALYRSKEGGRNQAQFYS 302


>gi|296106470|ref|YP_003618170.1| Predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Legionella pneumophila
           2300/99 Alcoy]
 gi|295648371|gb|ADG24218.1| Predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Legionella pneumophila
           2300/99 Alcoy]
          Length = 771

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 87/185 (47%), Gaps = 11/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
            + +     +++ Q +  D L+ L N    +  +     +       L+ +F D+D FK 
Sbjct: 325 DVTQRRDMEDQLLQQATYDSLTNLPNRVLLMDRVEQAILQARKNKAILAFLFLDLDRFKL 384

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLR 200
            ND  GH +GDK++  ++++L++V      V RLGG+EF           EA  +A ++ 
Sbjct: 385 TNDTLGHSMGDKLLQAIANRLLIVTEDFDTVARLGGDEFVILLTDIDNMLEAETIAQNIL 444

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           KIIE   I I    S+ IT S GI+      +   +++  AD ++Y AK +GRN    + 
Sbjct: 445 KIIEK-PIQI-DQHSLKITGSLGISFYPRDGDDYESLMKSADLSMYHAKDTGRNNYRVYE 502

Query: 260 DIENN 264
              N 
Sbjct: 503 PEMNR 507


>gi|254235755|ref|ZP_04929078.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126167686|gb|EAZ53197.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 341

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/188 (33%), Positives = 97/188 (51%), Gaps = 12/188 (6%)

Query: 80  LLLGYISGSILKE----LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128
           L  GY+    L E    L    +R  + S +D L+ L N + F       +    + +++
Sbjct: 153 LAEGYLQLRSLTEHTRFLRQEIDREQRKSLLDPLTQLWNRAGFHALHQHELELARASDQR 212

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           + I++ DID+FK+IND  GH  GD V+   + +L         + R GGEEF A      
Sbjct: 213 IGIIYSDIDHFKRINDTLGHRAGDSVLREAASRLRAALRPEDLLARFGGEEFVAMVQVRE 272

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
             E  ++AN +R+++E + I+  +G S+ +TISAG       E     + RAD ALY AK
Sbjct: 273 TTELTMIANRIRELMEATPIDC-AGTSVPVTISAGCTLAGSGEEPEQALARADAALYDAK 331

Query: 249 KSGRNRVV 256
           ++GRNRVV
Sbjct: 332 RAGRNRVV 339


>gi|16804213|ref|NP_465698.1| hypothetical protein lmo2174 [Listeria monocytogenes EGD-e]
 gi|47095748|ref|ZP_00233354.1| GGDEF domain protein [Listeria monocytogenes str. 1/2a F6854]
 gi|224500161|ref|ZP_03668510.1| hypothetical protein LmonF1_10959 [Listeria monocytogenes Finland
           1988]
 gi|224501027|ref|ZP_03669334.1| hypothetical protein LmonFR_00660 [Listeria monocytogenes FSL
           R2-561]
 gi|254831389|ref|ZP_05236044.1| hypothetical protein Lmon1_08522 [Listeria monocytogenes 10403S]
 gi|254899125|ref|ZP_05259049.1| hypothetical protein LmonJ_04914 [Listeria monocytogenes J0161]
 gi|254912734|ref|ZP_05262746.1| GGDEF domain-containing protein [Listeria monocytogenes J2818]
 gi|254937061|ref|ZP_05268758.1| GGDEF domain-containing protein [Listeria monocytogenes F6900]
 gi|284802621|ref|YP_003414486.1| hypothetical protein LM5578_2377 [Listeria monocytogenes 08-5578]
 gi|284995763|ref|YP_003417531.1| hypothetical protein LM5923_2328 [Listeria monocytogenes 08-5923]
 gi|16411644|emb|CAD00252.1| lmo2174 [Listeria monocytogenes EGD-e]
 gi|47015891|gb|EAL06818.1| GGDEF domain protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258609664|gb|EEW22272.1| GGDEF domain-containing protein [Listeria monocytogenes F6900]
 gi|284058183|gb|ADB69124.1| hypothetical protein LM5578_2377 [Listeria monocytogenes 08-5578]
 gi|284061230|gb|ADB72169.1| hypothetical protein LM5923_2328 [Listeria monocytogenes 08-5923]
 gi|293590729|gb|EFF99063.1| GGDEF domain-containing protein [Listeria monocytogenes J2818]
          Length = 357

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 64/233 (27%), Positives = 107/233 (45%), Gaps = 11/233 (4%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           F I+   ++ I       I L      E     N+++ ++   I+L++G +S  ++  + 
Sbjct: 126 FKIWGVFILNIIACSFVVINLHLILARESHFWINMTVFVL---IALVIGAVSAGLMSNMI 182

Query: 95  IS---YNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFG 147
            S   + +  Q S +D L+ L N   F       + + + +++++  DIDYFK IND +G
Sbjct: 183 KSKQLFQKYEQDSTLDYLTKLSNVRQFDEKINHVMDAGSRQVTLMLIDIDYFKNINDTYG 242

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD ++  L+  L           R GGEEF+   L    ++    A  +R+  E   
Sbjct: 243 HDAGDAILKQLAIILKRNTSDGSEAFRNGGEEFSIVLLDCPIEKGNFFAEQVRRETEEYD 302

Query: 208 INISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFS 259
             I SG  + ITIS G++        S  +   AD+ALY AK +GRN+V    
Sbjct: 303 FMIPSGQVVKITISVGVSSSKDGANTSEGLFKSADEALYKAKLTGRNQVCIAD 355


>gi|163851405|ref|YP_001639448.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|254561166|ref|YP_003068261.1| hypothetical protein METDI2743 [Methylobacterium extorquens DM4]
 gi|163663010|gb|ABY30377.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|254268444|emb|CAX24401.1| hypothetical protein METDI2743 [Methylobacterium extorquens DM4]
          Length = 298

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 92/180 (51%), Gaps = 18/180 (10%)

Query: 90  LKELFISYNRIS-------QLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDI 136
           L+    +  R++       +L+  D L+GLLN  AF+       +K      L  V  DI
Sbjct: 112 LQARMRAAERLTTLQSDLIRLAETDSLTGLLNRRAFLQRTREAAQKAGSFGHLCAVILDI 171

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND  GH VGD  I  ++  +          GRLGGEEFA    G    EA  +A
Sbjct: 172 DHFKRINDEHGHDVGDAAIKAVAGMIEA----EGIAGRLGGEEFAVMLAGQRLTEAEAVA 227

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + LR    + +I  + GP + +T S G++E    E +  ++ RAD ALY AK +GRNRVV
Sbjct: 228 SRLRLKTSDLRIRSTKGP-VRLTCSFGVSEWSEGETVEGLLKRADIALYEAKTTGRNRVV 286


>gi|332558451|ref|ZP_08412773.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides WS8N]
 gi|332276163|gb|EGJ21478.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides WS8N]
          Length = 830

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 88/187 (47%), Gaps = 12/187 (6%)

Query: 85  ISGSILKELFISYNRIS--QLSRIDCLSGLLNHSAF----ISSLGSY--NEKLSIVFFDI 136
           IS     E      ++    ++R D L+GL N   F      ++ S      ++++  D+
Sbjct: 374 ISARRQAEDDRVMAQLQVFHMARHDMLTGLPNRHYFGDCYQEAVASLAPERSVAVLMLDL 433

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAIL 195
           D FK +ND  GHPVGD+V+  ++++L     +   V RLGG+EFA       SEQEA  L
Sbjct: 434 DGFKTVNDTRGHPVGDQVLCEVANRLRTSVRSTDTVARLGGDEFAVIQTPIRSEQEACDL 493

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  L   I  S+     G    +  S GIA  R   +    I+  AD ALY AK++GR  
Sbjct: 494 ARRLIAAI--SKPFDLEGAVPEVGASVGIAFARGRGDSAEEIMRYADVALYAAKQAGRGT 551

Query: 255 VVCFSDI 261
              F + 
Sbjct: 552 FRVFDEA 558


>gi|309389469|gb|ADO77349.1| diguanylate cyclase [Halanaerobium praevalens DSM 2228]
          Length = 513

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 60/168 (35%), Positives = 83/168 (49%), Gaps = 11/168 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
            +++  L+  D L+ + N     + L         YN   + + FDIDYFK +NDN+GH 
Sbjct: 349 NHKLRLLAHNDELTEINNRRHLTNVLTKEFNRHQRYNSSFAFIIFDIDYFKNVNDNYGHD 408

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+++  LS+ +          GR GGEEF   A  +  + A  LA  LRK I      
Sbjct: 409 EGDRILKELSELIKNNIRQSDHFGRWGGEEFVLLAPETELKAAYKLAEKLRKAIAAYNFI 468

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +     +IT S GIA   ++E I  +I RAD ALY AK  GRNRV  
Sbjct: 469 QAE----NITASFGIAVIENEENIEELIKRADNALYRAKAKGRNRVEI 512


>gi|307824848|ref|ZP_07655071.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylobacter tundripaludum SV96]
 gi|307734206|gb|EFO05060.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylobacter tundripaludum SV96]
          Length = 1017

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 90/224 (40%), Gaps = 22/224 (9%)

Query: 64  ILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  E L +  I+     +  Y+ + + + +      RI  L+  D L+ L N +     L
Sbjct: 522 IYPEWLCITAITNPEGAVTNYVGTFTDISQRKADEERIKDLAYYDSLTKLPNRTLLFDRL 581

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                         +++F D+D FK +ND  GH  GD+++  +  +L         V RL
Sbjct: 582 NLALNASNRNKTHGALMFLDLDNFKTLNDTLGHDRGDQLLIEVGRRLQSCVREVDTVARL 641

Query: 176 GGEEFAAAALGSSEQE------AAILANDLRKIIENSQI---NISSGPSIHI----TISA 222
           GG+EF        EQE      A  +A  +R  +    +   NI +     +    T S 
Sbjct: 642 GGDEFVVMLECLDEQEIEAAVQAHTVAEKIRSNLAEFYLLKSNIDNKLQPFVEHYSTGSI 701

Query: 223 GIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           G      H+     ++ RAD A+Y AK++GRN +  F       
Sbjct: 702 GFVLFLGHETSSEELLKRADLAMYQAKQAGRNVIRAFIPEMQEA 745


>gi|240139525|ref|YP_002964000.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL), with
           PAS sensor, signal transduction histidine kinase and
           methyl-accepting chemotaxis domains; putative
           membrane-associated protein [Methylobacterium extorquens
           AM1]
 gi|240009497|gb|ACS40723.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL), with
           PAS sensor, signal transduction histidine kinase and
           methyl-accepting chemotaxis domains; putative
           membrane-associated protein [Methylobacterium extorquens
           AM1]
          Length = 954

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 17/196 (8%)

Query: 83  GYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVF 133
           G+I+    + + + +  RI  ++R D L+GL N   F   L               + + 
Sbjct: 501 GWIATYEDVTQRYEAEARIITMARKDALTGLANRMVFGERLEEAAAHLDEGAGAGFATLC 560

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-----S 188
            D+D FK++ND  GHP+GD ++  ++++L         V RLGG+EFA    G      +
Sbjct: 561 LDLDRFKEVNDTLGHPIGDGLLRSVAERLQGCLRDTDLVARLGGDEFAIVQAGVQAGTHA 620

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVA 247
            ++A+ LA  L    +  Q  +  G ++ + +S GI+    H      ++  AD ALY A
Sbjct: 621 RRDASALAKRLIAAFQ--QPFLLDGHTVTVGLSIGISLAPEHGTSPEKLLKSADLALYRA 678

Query: 248 KKSGRNRVVCFSDIEN 263
           K +GR     F +  +
Sbjct: 679 KATGRGCWAFFDEEMD 694


>gi|239993848|ref|ZP_04714372.1| Intracellular signaling protein (GAF,GGDEF,EAL domains)
           [Alteromonas macleodii ATCC 27126]
          Length = 866

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 82/187 (43%), Gaps = 12/187 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK-LSIVFFDIDYF 139
             ++E      ++   +  D L+ L N + F S L         Y+E   +++F D+D F
Sbjct: 427 QQIEERKEIELKLIHDAHHDSLTDLPNRAMFTSRLELAIASKQRYSENMFAVLFIDLDRF 486

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K IND  GH  GD+ +  ++ ++ +       + RLGG+EF         E +   +A+ 
Sbjct: 487 KVINDTLGHHAGDEFLIEVARRIALCIRGHDLLARLGGDEFVVLLDNFEDEADVEEVASR 546

Query: 199 LRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   I  S+  +  G  ++   S GIA    +      ++  AD A+Y AK  GR R V 
Sbjct: 547 IISSI--SEPFLLDGREMYSGASIGIAHLETYYRAADEVLRDADAAMYQAKTLGRGRFVM 604

Query: 258 FSDIENN 264
           F     +
Sbjct: 605 FDKSMRD 611


>gi|157376703|ref|YP_001475303.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157319077|gb|ABV38175.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 610

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 64/198 (32%), Positives = 90/198 (45%), Gaps = 16/198 (8%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           ++L+I  IT+    GY S       +++  R+ QL+  D L+G+ N   F     S  + 
Sbjct: 392 IALLIAIITLLSFWGYKS-------WMTQKRLKQLAEFDALTGVFNRGHFTQLAQSALQY 444

Query: 129 -------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                  LS + FD+D FK IND++GH  GD V+  ++D   V   +     RLGGEEF 
Sbjct: 445 CENSDIYLSCILFDLDKFKTINDSYGHACGDWVLKRVADVCKVQGRSNDIFARLGGEEFC 504

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRA 240
               G     A  LA   RK I     +  SG    IT S G+ +       +  I   A
Sbjct: 505 ILLPGCDLLTATRLAETCRKAIAQLDTS-DSGAEFIITASFGVTDAKLSGYDLEKITADA 563

Query: 241 DQALYVAKKSGRNRVVCF 258
           D A+Y +K  GRNR   F
Sbjct: 564 DMAMYQSKHDGRNRTTVF 581


>gi|229179805|ref|ZP_04307152.1| Sensory box/GGDEF [Bacillus cereus 172560W]
 gi|228603634|gb|EEK61108.1| Sensory box/GGDEF [Bacillus cereus 172560W]
          Length = 828

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 10/205 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           IL   +++V I I       Y+    +  +      I+ L+  D ++ + N   F   L 
Sbjct: 361 ILFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELD 420

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     +K  +++ D++ FK IND  GH +GDKV+  ++ +        + + R+G
Sbjct: 421 RSIKRAQKTQDKFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIG 480

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           G+EFA      +EQ+   L   L +I E  +  + +  S ++++S GIA         +T
Sbjct: 481 GDEFAIIVHNQTEQQLLDLCKTLFRITE--EPFVVNQHSFYLSLSIGIAVYPFGGINTTT 538

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++  AD A+Y AK+ G N V  + +
Sbjct: 539 LLQHADIAMYSAKEKGNNAVCMYDE 563


>gi|218886639|ref|YP_002435960.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757593|gb|ACL08492.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 739

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 10/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQI 142
            + EL     +I   +  D L+GL N       +  +      + +L++++ D+D FK +
Sbjct: 281 DVSELKRKEAQIVHQATHDELTGLPNRMGLRQRMEDHALKGGPDARLAVLYLDMDNFKTV 340

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+ GH VGD+++  ++ +LV +      V RLGG+EF      S+E +   LA      
Sbjct: 341 NDSLGHAVGDELLRAVAGRLVGMAPRRDMVARLGGDEFVVLLPLSAEGDGE-LAETESAR 399

Query: 203 IENS--QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I++S  +   ++   +++  S GI+         +T++  A+ A+Y AK+ G  R   F+
Sbjct: 400 IQDSFTRPFNAADHELYVMPSIGISVAPEDGRDPATLLKNAEIAMYRAKEQGGARFRRFT 459

Query: 260 DIENN 264
              N+
Sbjct: 460 QAMND 464


>gi|254458008|ref|ZP_05071435.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207085401|gb|EDZ62686.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 628

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 64/212 (30%), Positives = 103/212 (48%), Gaps = 13/212 (6%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           Y  +T    +++IL   + +   +  I   +GY++   +  L  S  ++ +LSR D L+ 
Sbjct: 418 YRVVTKDGDIKWILDSTVIVRNANNEIINFVGYLT--DISALKNSELKLQKLSRTDQLTK 475

Query: 112 LLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           + N       L S   +        SI+  DID+FK +ND++GH VGD VI   +  L  
Sbjct: 476 VSNRMHIDDVLQSQYYRFYRDNELTSIILLDIDFFKSVNDDYGHIVGDSVIIEFAKILQS 535

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                  +GR GGEEF      ++  +A  LAN L+KII  +  +         T S G+
Sbjct: 536 SIRKGDILGRWGGEEFLIILPHTNLDQAMQLANKLQKIIFQNNFSTVKHK----TASFGV 591

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +       + T+I  AD+ALY++K++GRN V 
Sbjct: 592 STFERGMSVETLIDSADKALYLSKENGRNCVT 623


>gi|188581186|ref|YP_001924631.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium populi BJ001]
 gi|179344684|gb|ACB80096.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium populi BJ001]
          Length = 298

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 62/180 (34%), Positives = 90/180 (50%), Gaps = 18/180 (10%)

Query: 90  LKELFISYNRIS-------QLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDI 136
           L+    +  R++       +L+  D L+ LLN  AF+       +K      L  +  DI
Sbjct: 112 LQARLRAAERLTTLQGDLIRLAETDPLTALLNRRAFLQRTRDAAQKAGPFGNLCAILLDI 171

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND +GH VGD  I  ++  +          GRLGGEEFA    G     A  +A
Sbjct: 172 DHFKRINDEYGHDVGDAAIKAVAGLIE----PEGIAGRLGGEEFAVIVAGHPLAAAEAIA 227

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + LR    + +I    GP + +T S G++E    E +  ++ RAD ALY AK +GRNRVV
Sbjct: 228 SRLRLKASDLRIRSPKGP-VRLTCSFGVSEWSDGETVEGLLKRADIALYEAKATGRNRVV 286


>gi|89092552|ref|ZP_01165505.1| hypothetical protein MED92_14638 [Oceanospirillum sp. MED92]
 gi|89083064|gb|EAR62283.1| hypothetical protein MED92_14638 [Oceanospirillum sp. MED92]
          Length = 783

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 115/251 (45%), Gaps = 24/251 (9%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL------LG 83
           +  I F   IAT + +  +   +I  +P   L++ L E ++    +I  S        LG
Sbjct: 261 FMLIVFIATIATYLLLQFLIRRFIT-SPIARLDHQLTEVMAQRRENIDASRSKDEVGRLG 319

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDI 136
               S+ ++L  SY      SR D L+ L N +AF                 +SI++ D+
Sbjct: 320 RKFQSLYEKLHNSYQESHIQSRTDALTRLPNRAAFYETASIKLGEAERKQSNISIIYIDL 379

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVF-------GTPMFVGRLGGEEFAAAALGSSE 189
           D FK +ND +GH +GD+++  ++ +L  +         +  +V RL G+EF A    +  
Sbjct: 380 DNFKFVNDKYGHEIGDELLKAVAIRLAHIISIKWKHTYSDEYVYRLSGDEFIAILPNAGT 439

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAK 248
            +A  L+  + K   +   +   G    +T S GIA        +S +I  AD A+Y AK
Sbjct: 440 VKAQELSQTILKQFADG-YHFELGH-FPVTASIGIATYPQDGHTLSQLISNADLAMYQAK 497

Query: 249 KSGRNRVVCFS 259
           KSG+N++  +S
Sbjct: 498 KSGKNKLAIYS 508


>gi|330881808|gb|EGH15957.1| PAS/PAC and GAF sensors-containing diguanylate cyclase [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 238

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 78/169 (46%), Gaps = 9/169 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
            N +   S  D L+GL N      +L             LS+V  D+D+FKQIND  GH 
Sbjct: 59  RNALHAKSIRDPLTGLFNRRFMEETLKREIVRSSRSGSPLSLVMLDLDHFKQINDIHGHA 118

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+   ++ L           R GGEE        + + A   A +L   I  +QI 
Sbjct: 119 AGDAVLRSTANLLTKSLRGSDVACRYGGEEILLILPDCAGEYAVQKAQELCDSIR-AQIV 177

Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
             +G +I +T S G+A     +   + ++  AD+ALY AKK GR+RV+ 
Sbjct: 178 TENGTAISVTGSFGVASTGSGKYDATELVVLADKALYQAKKEGRDRVIY 226


>gi|237797721|ref|ZP_04586182.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|237806000|ref|ZP_04592704.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331020571|gb|EGI00628.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331027110|gb|EGI07165.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 545

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 15/228 (6%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK----ELFISY 97
           ++  A +   +I   P++   Y  +    ++I ++ +  +L Y     L     EL  + 
Sbjct: 304 IVAAAGVSCQHI-FAPWWAYAYRSMALSGMIIFTLALLGVLLYRQIQQLISAEGELNNTR 362

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
           + +  +++ D L+ L N   F +SL     +       L+I+  DID+FKQ ND +GH  
Sbjct: 363 HELEIIAQTDSLTNLANRRCFDASLQKEWGRASRNNSVLAIILLDIDWFKQYNDRYGHLK 422

Query: 151 GDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD  +  +++ L      +     R GGEEF      +    A  +A  +R  IEN+ I 
Sbjct: 423 GDDCLMQVAEILGSCINRSGDLAARYGGEEFVILLAETDLAGALSVAEKVRSAIENAFIE 482

Query: 210 ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S+ P  ++TIS+G+       KE     +  AD+ LY AK  GRNRV
Sbjct: 483 HSASPVGNLTISSGVVAISAPEKEDHKAALEEADRLLYSAKTKGRNRV 530


>gi|332995083|gb|AEF05138.1| diguanylate cyclase [Alteromonas sp. SN2]
          Length = 634

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 16/205 (7%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS--- 120
           +  +N+ LV + +  +LLL ++        + +  ++  LS  D L+GL N   F     
Sbjct: 433 VRQKNMMLVGVVVIFALLLIFVVFQ-----YKNSRKLLALSIRDDLTGLHNRRYFFDYFE 487

Query: 121 ----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                L   +  L+++ FDID FK INDN GH VGD+VI  ++        T   + R+G
Sbjct: 488 HNLVKLNPSHVGLALISFDIDNFKHINDNLGHHVGDEVIKTVAHTAANTLRTNDVIARIG 547

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE----P 232
           G+EF  A   ++  +A  +A  + + I + +     G    +T S G+A     +     
Sbjct: 548 GDEFIIALPRTTLLQAKEIAKRILENIRSHRFTTKEGADFSVTASLGVAYHHQNKLIALD 607

Query: 233 ISTIIYRADQALYVAKKSGRNRVVC 257
           + +++  AD ALY +K++G+NR   
Sbjct: 608 VKSMMESADTALYQSKRAGKNRFTV 632


>gi|291278657|ref|YP_003495492.1| hypothetical protein DEFDS_0225 [Deferribacter desulfuricans SSM1]
 gi|290753359|dbj|BAI79736.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 574

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 59/214 (27%), Positives = 97/214 (45%), Gaps = 10/214 (4%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLL-LGYISGSILKELFISYNRISQLSRIDCLSG 111
           I +   Y  E I+++N  L I+   I+ L + +    I ++L     +  ++S  D L+G
Sbjct: 360 IAVMKLYLKESIVIDNDILEILKEVINFLSIAFEREFIRRKLIEEREKFYEISIHDTLTG 419

Query: 112 LLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
             +      ++              + IV  DID FK IND +GH VGD+V+  ++D + 
Sbjct: 420 CYSRYYLKETIKRVLAIHDRGEIRNVGIVMLDIDDFKNINDTYGHDVGDEVLKVIADIIK 479

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                     R GGEEF   A+ +  +   ++A  +R  +E  + +        IT S G
Sbjct: 480 NEVRVGDIPVRYGGEEFMIVAVVNDIKSVYMVAERIRTKLEEYKWDAPLDKE-RITASFG 538

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  R   E    +I R D  LY AK +G+N V+C
Sbjct: 539 VVLRKKGESFEDVIKRVDINLYKAKSAGKNTVIC 572


>gi|229170119|ref|ZP_04297808.1| GGDEF domain protein [Bacillus cereus AH621]
 gi|228613350|gb|EEK70486.1| GGDEF domain protein [Bacillus cereus AH621]
          Length = 343

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 68/239 (28%), Positives = 114/239 (47%), Gaps = 18/239 (7%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI- 85
             + + +  SIF   + F  N++   I + P     YIL +++ +V++ +   ++  YI 
Sbjct: 109 ITLIWRMKISIFTKWIWF--NVYSLSILILPL----YILFKDIYVVVLYLICCIIAAYIT 162

Query: 86  --SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
             S S + +    +  +   + ID L+ L N   F   +  +       N+ L ++  DI
Sbjct: 163 FVSASYILQSNELFQTMKHYATIDALTNLGNVRQFDFEMNRHIDSKHMKNDSLCLLLIDI 222

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK +ND +GHP GD+V+  L   L+     P  V R GGEEFA             + 
Sbjct: 223 DHFKYVNDTYGHPAGDEVLKQLGRILLENAPFPNLVFRKGGEEFALLLPKKRVAFGTRIG 282

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +R  +E     + +G  I IT+S G++E   K+     I  AD ALY +K++GRN+V
Sbjct: 283 EQIRLAVEKHLFQLQNGGKIKITVSVGLSEY--KKSPEQFIQSADDALYYSKRNGRNKV 339


>gi|152995778|ref|YP_001340613.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
 gi|150836702|gb|ABR70678.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
          Length = 659

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 11/190 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDI 136
           Y+    ++E       + +L+  D L+ L N +     L S        + +  +++ D+
Sbjct: 210 YLLTHDIQEERDHEVALYRLNNYDGLTHLPNRNLLYQQLESALVNARKRHRQFGLLYLDL 269

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAIL 195
           D FK INDNFGH VGD++I  +++++     +   + RLGG+EF      ++E +E   +
Sbjct: 270 DGFKVINDNFGHRVGDELIQRVAERIKGSIPSSACLYRLGGDEFVVVLENTNEIEELESI 329

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A  + +   N+     +   + IT S GIA    H + +  ++  AD A+Y AK +G N 
Sbjct: 330 AQSIMQNASNTYP--VAKMEMMITASIGIASYPQHADDVDNLLKNADAAMYRAKSTGHNM 387

Query: 255 VVCFSDIENN 264
              + D   +
Sbjct: 388 YCVYEDHMAD 397


>gi|262372117|ref|ZP_06065396.1| WspR [Acinetobacter junii SH205]
 gi|262312142|gb|EEY93227.1| WspR [Acinetobacter junii SH205]
          Length = 420

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 116/239 (48%), Gaps = 11/239 (4%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL-GYIS 86
           M++     ++ I   ++  NI   ++ L   +    +L  ++S+++ S    L L   IS
Sbjct: 173 MLWIGTLAAVCILLSLYYFNIPCDFLMLGRTFIGSLLLGFSISIMLTSKERKLFLKTKIS 232

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
               + L +  + +  LS+ D L+ + N   F              N+ +S++F DIDYF
Sbjct: 233 EINERILRLQASELLHLSQHDELTKVSNRRTFEEMFSYYYDMACKENKSMSVLFIDIDYF 292

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND +GH +GD+VI+ ++  +        F+ R GGEEF      +S Q A  +A ++
Sbjct: 293 KNYNDFYGHQMGDQVISSIAKTIKSSIRHMDFIARYGGEEFVVLLPETSAQGAYAVATNI 352

Query: 200 RKIIENSQINISSG-PSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255
            K I+   I       S H+TIS GI        IS   +I+ AD+ALY AK+ GRN++
Sbjct: 353 YKAIDRQMIPHEKSLVSNHVTISLGITVFNGNPKISQELLIHTADKALYRAKQLGRNQI 411


>gi|154248965|ref|YP_001409790.1| diguanylate cyclase [Fervidobacterium nodosum Rt17-B1]
 gi|154152901|gb|ABS60133.1| diguanylate cyclase [Fervidobacterium nodosum Rt17-B1]
          Length = 1320

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 19/177 (10%)

Query: 100  ISQL-SRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
            ++++ S +D L+ L     F   L  Y        + L+IV  DID FK+IND +GH  G
Sbjct: 1143 LTRMRSYVDPLTKLFTRYYFAELLSQYFENAVNQKDSLAIVMCDIDNFKKINDTYGHLTG 1202

Query: 152  DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            DKV+  ++  L     T   VGR GGEEF  A   +  +E  ++   LR++I++ Q    
Sbjct: 1203 DKVLKTIAKILRDNVRTTDIVGRFGGEEFIMAFPSTDSEEVVLILERLRRLIKDVQEF-- 1260

Query: 212  SGPSIHITISAGIAERCHKEP------ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
                  +T+S G+                 +I  AD ALY AK +G++++V +S+  
Sbjct: 1261 ---PFKLTLSFGVVSYPQDTENIIIKAPEDLIRLADTALYHAKNTGKDKIVVYSEGM 1314


>gi|152986676|ref|YP_001345771.1| hypothetical protein PSPA7_0376 [Pseudomonas aeruginosa PA7]
 gi|150961834|gb|ABR83859.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 760

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 10/180 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFK 140
           S L  +  S N +  L+  D L+GL N       +    E         +++  D+D+FK
Sbjct: 315 SDLSSIKRSENELDFLAHHDSLTGLPNRVLLRQRIEQALEDGKDRAVAGALLLIDLDHFK 374

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND+ GH  GD ++  +S +L    G    + RLGG+EFA        +  A L+  + 
Sbjct: 375 HINDSLGHTTGDMLLKEVSKRLQHQLGERCLLSRLGGDEFAILVENDDPEAVARLSQRIL 434

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
               N+  +I   P I+I+ S G++        +  ++  AD AL+ AK SGRN    ++
Sbjct: 435 DGF-NAPFDIHCQP-IYISASLGVSLYPEDASDVDHLMQHADAALFQAKDSGRNAYAFYT 492


>gi|78043307|ref|YP_359559.1| GGDEF domain-containing protein [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995422|gb|ABB14321.1| GGDEF domain protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 653

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 95/183 (51%), Gaps = 5/183 (2%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-LGSYNEKLSIVFFDIDYFK 140
           L  +SG ++K L++  N ++++S  D L+   N      + L + +   S++F D+D FK
Sbjct: 472 LILMSGPLVK-LYLLKNYLAEISLRDPLTQAFNRRFLEDAILENRDCNYSLIFIDLDKFK 530

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD V+  L+ ++     +   V R+GG+E       +  +    +AN + 
Sbjct: 531 EINDTYGHNAGDLVLIKLTQKIRENLRSQDQVIRMGGDEILIYLPNTPIELTREIANRIM 590

Query: 201 KIIENSQINI---SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++I   Q  +   +   + +++ S GI      E    ++ R D+ALY AK+ GRN++V 
Sbjct: 591 ELIRKEQFTVMKDTKTVTFNVSASMGIGSCREGESFEEVLARVDKALYRAKELGRNQIVV 650

Query: 258 FSD 260
            +D
Sbjct: 651 AAD 653


>gi|42784588|ref|NP_981835.1| GGDEF domain-containing protein [Bacillus cereus ATCC 10987]
 gi|42740520|gb|AAS44443.1| GGDEF domain protein [Bacillus cereus ATCC 10987]
          Length = 352

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 106/226 (46%), Gaps = 16/226 (7%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96
           +++ T I    I   YI L          +  + L ++S  I+  + +IS + + +    
Sbjct: 132 VWLHTYILSILIPSLYIWLIKD-------IHIVGLYLVSSIITGYITFISANYVLQSNEL 184

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
           + ++ Q + ID L+GL N   F   +  +       N+ L ++  DID+FK +ND +GHP
Sbjct: 185 FQKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNDSLCLLLIDIDHFKCVNDTYGHP 244

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+  +   L  V   P    R GGEEFA                 +R  +EN    
Sbjct: 245 AGDEVLKQIGSILREVSPFPNLSFRKGGEEFALLIPKKGLAYGMHTGEKVRTAVENHSFE 304

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + +G  I IT+S G++    +E     I  AD ALY +K++GRN+V
Sbjct: 305 LLNGTKIKITVSVGVSVY--EESPEQFIQAADDALYYSKRNGRNQV 348


>gi|323494681|ref|ZP_08099784.1| membrane associated GGDEF protein [Vibrio brasiliensis LMG 20546]
 gi|323311114|gb|EGA64275.1| membrane associated GGDEF protein [Vibrio brasiliensis LMG 20546]
          Length = 565

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 8/168 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHP 149
             ++   +  D L+GL N   F         K       LS++  D+D+FK+ NDNFGH 
Sbjct: 377 QEKLRSQAMRDPLTGLFNRRYFEEVFDREWSKAEQDSTQLSLLMLDLDHFKRFNDNFGHD 436

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  +S  L           RLGGEE A     +   EA  LA  + + +    ++
Sbjct: 437 AGDYVLKEVSSLLKQSITDTHVACRLGGEELAIICPDTPAVEALTLAEQIVESVRELHLD 496

Query: 210 ISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
           +       + +S G+          + ++  AD ALY AK  GR++ +
Sbjct: 497 MKGLSLGQLGVSIGVTTYPELNASTAELVKAADTALYQAKDQGRSQAI 544


>gi|262197234|ref|YP_003268443.1| response regulator receiver modulated diguanylate cyclase
           [Haliangium ochraceum DSM 14365]
 gi|262080581|gb|ACY16550.1| response regulator receiver modulated diguanylate cyclase
           [Haliangium ochraceum DSM 14365]
          Length = 360

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 10/179 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL  +  R+  L+  D L+G+ NH          +         +S++  D+D+FK+ N
Sbjct: 167 RELAAANERLRSLAETDGLTGIYNHRHLQWFLRREVERARRSGLPISVLMIDVDHFKRFN 226

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GHP GD ++  L+  L     T     R GGEEFA     +++  A  +A  LR+ +
Sbjct: 227 DHHGHPAGDDLLRALATLLDGDRRTSDLCARYGGEEFALVLPDTAKTTATRVAVRLRRRV 286

Query: 204 ENSQINISS--GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
                  +    P  +++IS G+A           ++  AD+ALY AK+ GR+RV  + 
Sbjct: 287 AEHAFEGADTSQPQGYLSISLGVASFPEDAGDADGLLEAADEALYQAKRLGRDRVALYE 345


>gi|297583861|ref|YP_003699641.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Bacillus selenitireducens MLS10]
 gi|297142318|gb|ADH99075.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus selenitireducens MLS10]
          Length = 778

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 11/197 (5%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFF 134
           SL +  I    + EL     +I QL+  D L+GL+N   F       +     +  I++F
Sbjct: 327 SLTMMLIKHHDVTELVHKDEQIEQLAYFDQLTGLVNRYHFEAIISEKIKDIGHQFGIIYF 386

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-A 193
           D+D+FK+IND  GH  GD ++  +++ L  V      + RLGG+EFA     +SE  A  
Sbjct: 387 DLDHFKKINDTIGHFAGDYLLKQVAETLQGVLPDDATLARLGGDEFAVVLDETSEGHALM 446

Query: 194 ILANDLRKII---ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
            L  ++   I       +NI  G   +I+ SAGI     H      ++   D A+Y AK 
Sbjct: 447 RLLEEVADTIVKTARKPVNI-DGVHYYISASAGIVVYPEHGRSHDELMKNVDTAMYKAKN 505

Query: 250 SGRNRVVCFS-DIENNT 265
            G+N+ + F+ +I++ T
Sbjct: 506 DGKNKCIFFNAEIKDET 522


>gi|217970320|ref|YP_002355554.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
 gi|217507647|gb|ACK54658.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
          Length = 1013

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 12/180 (6%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKL---SIVFFDIDYF 139
              + E      R+++L+  D L+GL N  +F++ L +       E     +++  DID+F
Sbjct: 830  RDVTERKERERRLAELAATDPLTGLPNRRSFLACLDAALDDARREPARGSALLMIDIDHF 889

Query: 140  KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LAN 197
            K +ND  GHPVGD+V+   +  +          GRLGGEEFA               LA 
Sbjct: 890  KHVNDTHGHPVGDEVLQHAARLIRGGLRQHDRAGRLGGEEFAVLLDDVDADTDTALTLAE 949

Query: 198  DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             LR+ +E +    ++  ++ +TIS G+A     +P   ++  AD ALY AK+ GRNRV  
Sbjct: 950  RLRRSVEAAPAATAA-GAVSLTISLGLALVSGGDPA-RVLGDADAALYRAKRGGRNRVCV 1007


>gi|170723556|ref|YP_001751244.1| diguanylate cyclase [Pseudomonas putida W619]
 gi|169761559|gb|ACA74875.1| diguanylate cyclase [Pseudomonas putida W619]
          Length = 498

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 12/172 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNF 146
             +   ++ L+  D L+GL N                   + L+++  D+D+FK  N   
Sbjct: 324 HEAEQGLATLAATDSLTGLANRRRLDQVLRQEWARAQRNRKPLAVLMVDVDHFKAFNQRH 383

Query: 147 GHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           GH  GD  +  ++  +      P     R GGEEF      +    A +LA  +R  +E 
Sbjct: 384 GHAGGDHALREVAKTIEQCIRRPADLAARYGGEEFQVVLPETELAGARLLAERIRTRVEA 443

Query: 206 SQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255
                    +  +T+S GI+       + ++T++  AD+ALY AK  GRNRV
Sbjct: 444 LAPFADDAHA--VTVSIGISVHTPGTQQDLTTMLGAADEALYRAKAKGRNRV 493


>gi|109896794|ref|YP_660049.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109699075|gb|ABG38995.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
          Length = 340

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 4/175 (2%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQIN 143
           +   +  L     +  Q +  D L+GL N   F   L ++  +  + ++  D+D+FK+IN
Sbjct: 161 AEREITRLRNQLEQSQQAALYDVLTGLCNRRYFDEELAAHAMRPNMCLILADLDHFKKIN 220

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH +GD V+   + +L           R GGEEFA     S    A  +A  +R+ I
Sbjct: 221 DTHGHVMGDLVLKASAKKLQAACREGAQAFRFGGEEFAIIVPNSKLSVARQIAETMRRSI 280

Query: 204 ENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E   +       +   I+ S GIAE         +I  AD+ LY AK  GRNRV+
Sbjct: 281 EKIGVRDKRTSQVLGGISASFGIAEMKTGMNPLALIEAADKQLYEAKNLGRNRVM 335


>gi|262375960|ref|ZP_06069191.1| WspR [Acinetobacter lwoffii SH145]
 gi|262309054|gb|EEY90186.1| WspR [Acinetobacter lwoffii SH145]
          Length = 423

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 28/243 (11%)

Query: 26  TFMIYFSIF--FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           T ++ FS+   F+  +   I I +  L Y+               +S +I +    + L 
Sbjct: 181 TILVLFSLSVEFNPMVFGRILIGSCLLGYV---------------ISHMIFARERVIFLY 225

Query: 84  YISGSILKEL-FISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFD 135
            I   I +++  I  N +  LS+ D L+ + N   F  +L             L+I+F D
Sbjct: 226 SIRARISEQIQRIHTNELLHLSQYDELTKISNRRTFDETLQVHFERAHREETALAILFID 285

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D+FK  ND +GH  GD VI+ ++  +        FV R GGEEF      +    A  +
Sbjct: 286 VDFFKNYNDFYGHQKGDDVISTIAKTIKNAIRHMDFVARYGGEEFVVLLPETDAHGAYAV 345

Query: 196 ANDLRKIIENSQINISSG-PSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGR 252
           A+++ K I+  +I       + HITIS GI     ++ I    ++  ADQALY AK+ GR
Sbjct: 346 ASNIFKAIDRLEIPHEKSLVAKHITISLGITVYRGEDDIDKDALLGIADQALYRAKQLGR 405

Query: 253 NRV 255
           N++
Sbjct: 406 NQI 408


>gi|192362232|ref|YP_001982033.1| putative signaling protein [Cellvibrio japonicus Ueda107]
 gi|190688397|gb|ACE86075.1| putative signaling protein [Cellvibrio japonicus Ueda107]
          Length = 732

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 7/176 (3%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQIND 144
             L E       + QL+  D L+GL N +                +++  D+D FK IND
Sbjct: 286 QDLTERRRKEEELHQLANTDILTGLANRANLYRRTEEVLLRPAPAAVLMIDLDGFKDIND 345

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKII 203
             GH VGD ++  ++++L    G    V R+GG+EFA         ++AA LA+ L   +
Sbjct: 346 TLGHSVGDSILCEVANRLQQAMGPADTVARIGGDEFAVLLPDVDHPEQAAELAHALIARL 405

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +    +  G  + I  S G+A    H +    +I  AD AL+ AKK GR +V  F
Sbjct: 406 AD--PIVIDGHEVRIAASCGVAVAPLHAQEALGLIGDADLALFKAKKLGRGQVFVF 459


>gi|167034562|ref|YP_001669793.1| diguanylate cyclase [Pseudomonas putida GB-1]
 gi|166861050|gb|ABY99457.1| diguanylate cyclase [Pseudomonas putida GB-1]
          Length = 460

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 117/249 (46%), Gaps = 18/249 (7%)

Query: 24  PHTFMIYFSIFFSIFIATVIFI---ANIFLFYIGLTPFYGLEYILVENLSLVIISITISL 80
           P   +++ +  +S F+ +++ +   + + +        + +        +L+   + I++
Sbjct: 203 PIAALLWCAWTYSPFLVSLLTLTAGSTLIVAVAQNLMHFSVPQSEPGVTTLMSARLGIAM 262

Query: 81  LLG--YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---------KL 129
           L+    +   + +       R+++ + ID L+G+L  SAF     +  +          L
Sbjct: 263 LVLGPLVVACVSQANRSLMARLARQATIDHLTGVLTRSAFTRRANALLDSRQQHAQALPL 322

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID+FK +ND  GH VGD+V+   +  L           RLGGEEFA    G + 
Sbjct: 323 TLMMLDIDHFKSVNDAHGHAVGDQVLRQFAGTLQDQLHNDELFARLGGEEFAVIIPGLAP 382

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYV 246
           + A   A  LR+ +++  + + +   + IT+S G+A      P   +  ++  ADQALY 
Sbjct: 383 ERAKFTAERLRRAVQDLHV-MQADQRLQITVSIGLAGCDADMPAPSLDELLASADQALYR 441

Query: 247 AKKSGRNRV 255
           AK  GRNRV
Sbjct: 442 AKAHGRNRV 450


>gi|119898518|ref|YP_933731.1| GGDEF/EAL/PAS-domain-containing protein [Azoarcus sp. BH72]
 gi|119670931|emb|CAL94844.1| GGDEF/EAL/PAS-domain containing protein [Azoarcus sp. BH72]
          Length = 889

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 87/188 (46%), Gaps = 10/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           + + +L     R+S L+  D L+ L N           I++    + ++ ++  D+D FK
Sbjct: 445 TDISQLRQFEERVSHLANYDLLTDLPNRLRMSDCLETAIAAARRSHTQVGVMLVDLDRFK 504

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            +ND  GH +GD+++A ++++L         +GR GG+EF           EAA +A  +
Sbjct: 505 NVNDALGHALGDELLAGVAERLRKHLRHGDTLGRYGGDEFLLVLEQLRDAGEAAAVARTM 564

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              ++     +  G  ++I  S GI+      +  + +I  AD A+Y AK+ GRN    +
Sbjct: 565 NSALDQ-PFLMRGGQELYIKASIGISLYPEDGDTAAELIKDADAAMYEAKRLGRNTFRYY 623

Query: 259 SDIENNTC 266
            +    T 
Sbjct: 624 QEDLTRTA 631


>gi|66046557|ref|YP_236398.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63257264|gb|AAY38360.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 548

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 99/228 (43%), Gaps = 15/228 (6%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK----ELFISYN 98
           I  A          P++      +    ++I+++    +L Y     L     EL I+ N
Sbjct: 299 IVAAAGISSQHVFAPWWAYAQRSMTITGIIILALVFLGVLLYRQIQQLITAEGELNIARN 358

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
            +  ++  D L+ L N   F ++L     +       ++I+  DID+FKQ ND +GH  G
Sbjct: 359 DLEIIAHTDSLTHLANRRCFDTALQQEWGRASRNDATIAIILLDIDWFKQYNDTYGHLQG 418

Query: 152 DKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D  +  ++  +   +  +     R GGEEF      +    A  LA  +R  IE S I  
Sbjct: 419 DDCLRQVAGLIGNSLDRSGDMAARYGGEEFVILLPETDLAGALKLAEKIRSSIEASCIEH 478

Query: 211 SSGPSIHITISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRNRV 255
           SS P   ++IS+G+      E        +  AD+ LY+AK  GRNRV
Sbjct: 479 SSSPLGRLSISSGVVAINAAEKKDAHTAALKEADRLLYLAKTKGRNRV 526


>gi|254720404|ref|ZP_05182215.1| response regulator PleD [Brucella sp. 83/13]
 gi|265985422|ref|ZP_06098157.1| response regulator receiver modulated diguanylate cyclase [Brucella
           sp. 83/13]
 gi|306839019|ref|ZP_07471840.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653]
 gi|264664014|gb|EEZ34275.1| response regulator receiver modulated diguanylate cyclase [Brucella
           sp. 83/13]
 gi|306405925|gb|EFM62183.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653]
          Length = 461

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 83/174 (47%), Gaps = 9/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L  S  R    S  D L+GL N           ++      + LSI+  D+D+FKQ+N+ 
Sbjct: 285 LRQSMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQ 344

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD V+   S +L         + R GGEEF      +  Q A  +A  +R I+  
Sbjct: 345 YGHGAGDHVLREFSGRLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRGIVAE 404

Query: 206 SQINISSGP-SIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   + SG   + +T+S G+ A R   + +  +  RA  AL  AK+SGRNR+V 
Sbjct: 405 APFVLDSGKRRVSMTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIVL 458


>gi|218438075|ref|YP_002376404.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7424]
 gi|218170803|gb|ACK69536.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7424]
          Length = 812

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 11/183 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFK 140
            + +  ++  R+      D L+GL N +  I  L     +         +++F D+D FK
Sbjct: 368 DITQRKLAEKRLRHEVLHDSLTGLPNRTLLIQRLEQVRHRAKRKANYCFALLFIDLDRFK 427

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDL 199
            INDN GHP+GD+V+  ++ +L     +   V RLGG+EF        E++    +   +
Sbjct: 428 NINDNLGHPIGDRVLITIASRLQECVRSLDTVARLGGDEFIILLDELEEEKEIFKIIERI 487

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            K +  +   +  G ++ +T S GIA        S ++  AD A+Y  K  G+     + 
Sbjct: 488 EKQL--TTPMVIEGQTLSLTASIGIAFNDTNLSNSDLLRNADLAMYRVKNEGKAGYAIYQ 545

Query: 260 DIE 262
              
Sbjct: 546 SEM 548


>gi|83645179|ref|YP_433614.1| GGDEF domain-containing protein [Hahella chejuensis KCTC 2396]
 gi|83633222|gb|ABC29189.1| FOG: GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 664

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 88/196 (44%), Gaps = 20/196 (10%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNE 127
           ++ ++LL+  ++         +  +    +  D L+GL N           ++     N+
Sbjct: 474 AVGVALLISEMT---------AQRQAEYFATHDTLTGLPNRRFLSTFITQELAVARRQNK 524

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
           K++ ++ D+D FK +ND  GH VGD ++  ++ +L  V      + RLGG+EF    L  
Sbjct: 525 KVAALYLDLDRFKDVNDTHGHSVGDALLQEVTRRLRQVVRESDLIVRLGGDEFVVVLLDI 584

Query: 188 -SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALY 245
               +   LA  + + +  +   +     +  + S GIA           ++  AD+A+Y
Sbjct: 585 KGVSDLTRLAESIIRSLSAT--YLFGSAEVRTSPSIGIAVYPDDVSGESQLLSCADEAMY 642

Query: 246 VAKKSGRNRVVCFSDI 261
            AKKSG  +   ++D+
Sbjct: 643 EAKKSGPGQYRHYADL 658


>gi|83311017|ref|YP_421281.1| signal transduction protein [Magnetospirillum magneticum AMB-1]
 gi|82945858|dbj|BAE50722.1| Predicted signal transduction protein containing a membrane domain
           [Magnetospirillum magneticum AMB-1]
          Length = 962

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 16/191 (8%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDY 138
            S + E   +   I   +  D L+GL N   F+  L     +        + ++  D+D 
Sbjct: 496 ASDITEQKKAEEIIWHQANHDLLTGLPNRRRFLDLLRKDLARADSLPDMVVGVLLIDLDR 555

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG---SSEQEAAIL 195
           FK++ND  GH +GD+++  ++ ++         +G LG +EF  + +    ++  EAA+ 
Sbjct: 556 FKEVNDTLGHAIGDQLLLEVARRIRSCLSEKDVIGHLGADEFIVSMIDDLSTTRLEAAVA 615

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  +R +I   +   S   ++H+T S GI A       +  ++   DQA+  AK  GR+R
Sbjct: 616 A--IRMVIA--EPFRSGSDTLHLTASIGITAYPTDGGDMEELLRNVDQAVREAKNGGRDR 671

Query: 255 VVCFSDIENNT 265
             CF++     
Sbjct: 672 SCCFTESMREA 682


>gi|103487777|ref|YP_617338.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingopyxis alaskensis RB2256]
 gi|98977854|gb|ABF54005.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingopyxis alaskensis RB2256]
          Length = 784

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 55/181 (30%), Positives = 86/181 (47%), Gaps = 11/181 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
           GS + E   +  +I++++R D L+GL N  +    L            + +++  D+D F
Sbjct: 337 GSDVTEQRATAEQIARMARFDNLTGLPNRLSLNEDLARALTRAIEAKSRCALLMIDLDRF 396

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K +ND  GHPVGDK++A ++ +L  +    M  GRLGG+EFA      SS   A  LA  
Sbjct: 397 KAVNDTLGHPVGDKLLAQVAARLKGLMERGMTCGRLGGDEFAVVLHNLSSPAVAEDLAQR 456

Query: 199 LRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   I  S+  +     + +  S G A        + T+   AD ALY +K  G N V  
Sbjct: 457 IIATI--SRPYVVDNHQLFVGASVGYAIGPTDGATVETLTRNADLALYKSKDRGGNVVAA 514

Query: 258 F 258
           +
Sbjct: 515 Y 515


>gi|322614666|gb|EFY11595.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620185|gb|EFY17057.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623479|gb|EFY20318.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629223|gb|EFY26002.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631943|gb|EFY28697.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637319|gb|EFY34021.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642005|gb|EFY38615.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646232|gb|EFY42746.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322652501|gb|EFY48855.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653336|gb|EFY49669.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660515|gb|EFY56751.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664667|gb|EFY60860.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669280|gb|EFY65430.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322670826|gb|EFY66959.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678936|gb|EFY74991.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681964|gb|EFY77989.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685207|gb|EFY81204.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323194445|gb|EFZ79640.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323197019|gb|EFZ82161.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323206911|gb|EFZ91864.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210319|gb|EFZ95211.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323214561|gb|EFZ99312.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323223118|gb|EGA07461.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227067|gb|EGA11248.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230115|gb|EGA14235.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233853|gb|EGA17942.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323238453|gb|EGA22511.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244141|gb|EGA28150.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246301|gb|EGA30284.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251927|gb|EGA35790.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257924|gb|EGA41603.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261063|gb|EGA44655.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265007|gb|EGA48506.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272570|gb|EGA55977.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 370

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 105/232 (45%), Gaps = 12/232 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            F++ +  ++    + L   GL P       L   LSL++I +   LL  ++S     +L
Sbjct: 141 LFTVGMGLLLASCLVTLQLTGL-PVAMRSSSLEVTLSLLVIML-YPLLFAWVSYQTAIKL 198

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
                R+  +S  D ++G+ N   +             ++ + +++  DID+FK IND +
Sbjct: 199 AEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFDHSRRHHREATLLIIDIDHFKSINDTW 258

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ I  L+ QL +       +GR GG+EFA    G+    A    + + + +   
Sbjct: 259 GHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEFAVIMCGTPADSAITAMSRVHERLNTL 318

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++     P + + IS G+A    +       +  AD ALY AK +GRNR   
Sbjct: 319 RLP--GAPQVMLRISVGVAPLTPQIGHYREWLKSADMALYKAKNAGRNRTEV 368


>gi|311696619|gb|ADP99492.1| sensory box/GGDEF/GAF/EAL domain protein [marine bacterium HP15]
          Length = 788

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 15/181 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSA----FISSLGSYNEK---LSIVFFDIDYFK 140
            +  E      R+ + +  D L+GL N       F   L   N +   +S+ F D+D FK
Sbjct: 341 RLHHEKQQHQERLEKAANYDSLTGLPNRRRLTEIFTQELHEANLRQGTVSLCFIDLDGFK 400

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDL 199
            IND  GH VGD V+  +S++L         +GRLGG+EF A      +    + +   +
Sbjct: 401 GINDQQGHAVGDAVLKIISERLKATIRQHDAIGRLGGDEFVAVLRDVEDSTVYSRILEAI 460

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           R+ I            + ++ S G+       E   T++  ADQA+Y AK SG++    F
Sbjct: 461 RRPIS------YQNAVMKLSASMGVTVYPDDAEDPDTLLRHADQAMYAAKDSGKDTYSLF 514

Query: 259 S 259
            
Sbjct: 515 D 515


>gi|213162197|ref|ZP_03347907.1| hypothetical protein Salmoneentericaenterica_20258 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
          Length = 427

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 115/273 (42%), Gaps = 21/273 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIA--------NIFLFYIGLTPFYGL 61
           ++WL      E           ++   I IA + +          N  + + G+   +  
Sbjct: 47  ALWLTFRLRNEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLA 106

Query: 62  EYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
             + V  L+++ I++ +SL    +      +   L  +   ++QL+  D L+ L N    
Sbjct: 107 VLVSVVALTILGITLLVSLFDARLQARTALLASSLAQANQELAQLALHDTLTRLPNRVLL 166

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L          +   +++F D+D FK +ND +GH +GDK++  ++ +L         
Sbjct: 167 EDRLEQAISKANRESTSFALLFMDLDGFKAVNDAYGHDIGDKLLVAVTHRLNQPLSGQFT 226

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF   A  S+  EAA LA+ L   I+           + +T+S GIA      
Sbjct: 227 LARIGGDEFVLLAEVSAPDEAASLASALVHSIDA--PFTIDPYELVVTLSVGIALYPLDG 284

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +    +++ AD A+Y  K +GRN    F    N
Sbjct: 285 KNERELMFNADAAMYHTKHTGRNGYHFFQPSMN 317


>gi|153875655|ref|ZP_02003359.1| two-component response regulator [Beggiatoa sp. PS]
 gi|152067881|gb|EDN66641.1| two-component response regulator [Beggiatoa sp. PS]
          Length = 335

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 93/178 (52%), Gaps = 15/178 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145
           L  +   + +L+ +DCL+ + N   F   L S  +        LS++F DIDYFK  ND+
Sbjct: 156 LEKANCELERLNALDCLTQIANRRRFEEYLSSEWQRLLPVRLPLSLIFADIDYFKHYNDH 215

Query: 146 FGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD+ +  ++  +          V R GGEEF      ++ QEA  +A ++++ + 
Sbjct: 216 YGHQAGDECLQQVAQAINRTAKPLSYLVARYGGEEFVILLPQTNIQEATQIAEEIQESV- 274

Query: 205 NSQINISSGPSI---HITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVC 257
             ++ I + PS+   ++++S GI+     + +S   ++  AD+ALY AK  GRN +V 
Sbjct: 275 -YKLKIVTAPSVENKYVSLSMGISSLIPNKDVSPKELVKMADEALYEAKGQGRNCIVI 331


>gi|152996746|ref|YP_001341581.1| putative periplasmic ligand-binding sensor protein [Marinomonas sp.
           MWYL1]
 gi|150837670|gb|ABR71646.1| putative periplasmic ligand-binding sensor protein [Marinomonas sp.
           MWYL1]
          Length = 965

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 96/207 (46%), Gaps = 18/207 (8%)

Query: 69  LSLVIISITISLLLGYISGSILK----------ELFISYNRISQLSRIDCLSGLLNHSAF 118
           L L+I++ +I   +  +  S LK           L        + +  D L+GL N  AF
Sbjct: 759 LVLIILAGSIKWRVQRLQKSELKLKALVEKQTYALRQQSEDFQRQANEDKLTGLPNRRAF 818

Query: 119 ISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L          +  L+++  DID+FK+IND++ H +GDK I  L+ QL+ +    + 
Sbjct: 819 DKWLSEKFIQAKQQHTPLALIIMDIDHFKKINDHYSHLIGDKAIKALAKQLLQLADHQIH 878

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
             R GGEEF       ++   A    +LR  IE    +      + +T+S G+A     E
Sbjct: 879 AARWGGEEFTLMIKDMNDANVAAYCENLRNSIETYDYS-DIAADLTMTVSMGVAFSHQVE 937

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCF 258
               ++  ADQALY AK+ GRNRV  +
Sbjct: 938 NYQDLLRLADQALYRAKEQGRNRVEIW 964


>gi|86607844|ref|YP_476606.1| GGDEF/FHA domain-containing protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556386|gb|ABD01343.1| GGDEF/FHA domain protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 316

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 11/166 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++  +  D L+GL N   F+  L         +   L +++ D+D FKQIND +GH  G
Sbjct: 148 QMATAALYDPLTGLYNRRFFLKQLELEIPFALRHRIPLHVLYLDLDGFKQINDRWGHWAG 207

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+ +  ++ +L         V RLGG+EFA    G    +   LA  LR+ ++   +  +
Sbjct: 208 DQTLIQVARRLQAHVRQDDLVARLGGDEFALLVRGIPNSQILGLAERLRQAVQTLLVQ-A 266

Query: 212 SGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNR 254
              +I ++ S GIA   E        +++  AD+ALY AK  G NR
Sbjct: 267 GTETISLSCSVGIASLLELGEGTDPQSLLAAADKALYQAKAEGGNR 312


>gi|330950714|gb|EGH50974.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 334

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 81/178 (45%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+GL N   F   L            +LS++  D+DYFK  N
Sbjct: 156 QQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRAVREQTQLSLLMIDVDYFKPYN 215

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DNFGH  GD+ +  ++  +            R GGEEFA     +S   A +LA  LR+ 
Sbjct: 216 DNFGHLEGDEALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQS 275

Query: 203 IENSQINISS-GPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
           +    I   +  P   +T+S G+A            +I  AD+ LY AK +GRN+V  
Sbjct: 276 VSGMNIPHMAPAPGSSLTVSIGVATVTPQLGMHSRQLILDADKGLYQAKNNGRNQVAA 333


>gi|291614683|ref|YP_003524840.1| response regulator receiver modulated diguanylate cyclase
           [Sideroxydans lithotrophicus ES-1]
 gi|291584795|gb|ADE12453.1| response regulator receiver modulated diguanylate cyclase
           [Sideroxydans lithotrophicus ES-1]
          Length = 322

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 16/213 (7%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGS-----ILKELFISYNRISQLSRIDCLSGLLN 114
           G +  L++ +S V++   +  +   I        +  +L  +   + +LS  D L+G+ N
Sbjct: 105 GGDDYLMKPISEVVLHAKVRAMRRLIEMQRSLVDVSHQLNAANKELQRLSTTDGLTGIAN 164

Query: 115 HSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS-DQLVVVF 166
              F               + L++V  DID FK  ND FGH  GD+ +  ++        
Sbjct: 165 RRMFDELSLREWRRCERMKKPLALVMLDIDSFKLFNDQFGHQAGDECLRAVAGQVARAAP 224

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA- 225
                  R GGEEF      +    A  +A ++R+ +    I  ++ PS  +TIS GIA 
Sbjct: 225 RAADLAARYGGEEFVLVLGETDADGAKWVAENVRQHVAELGIPHAT-PSRRVTISCGIAS 283

Query: 226 -ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            E      +  ++  AD+ALY AK  GR+RVV 
Sbjct: 284 VEPKSGFSLDVLLRSADRALYQAKVEGRDRVVV 316


>gi|83643204|ref|YP_431639.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631247|gb|ABC27214.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 578

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 85/179 (47%), Gaps = 12/179 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDY 138
           SG + + L I   R    +  D L+ L N  A+             Y   L++V  DID 
Sbjct: 402 SGEVRERLEIERAR----ALTDALTALPNREAYENRVRDEFERWRRYGNPLTLVVADIDR 457

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++ND FGH  GDKVI  +  ++        F+ R GGEEF      +    AA + + 
Sbjct: 458 FKEVNDKFGHLAGDKVIQLIGKEVSRRIRKTDFIARYGGEEFVVLLPETPASIAAEVMDK 517

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            R++I     +  +   + IT+S G+ E      +  +  +ADQALY AK+SGRN+V  
Sbjct: 518 TREMISRLPFHFRN-EKVRITMSFGVCEFHGDATVQGVFEKADQALYKAKRSGRNQVQI 575


>gi|330863883|emb|CBX73974.1| hypothetical protein YEW_GR28610 [Yersinia enterocolitica W22703]
          Length = 700

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 10/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           S+  E  +S  +I  L+  D L+GL N + F       I+     N  L+++  ++D FK
Sbjct: 421 SLAMERELSRKQIQHLAFYDSLTGLPNRTQFLVYAKQAIALAAEMNYPLAVLVINLDRFK 480

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND+ GH  GD+++A ++ +L         +GRL G+EF       + Q+  +    + 
Sbjct: 481 QVNDSLGHAAGDELLAAMAQRLRDSLPKNDIIGRLSGDEFIIMLTSCTMQQTTVRVEKML 540

Query: 201 KIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++  SQ    +  +I  + S GI+        + T++  AD A++ AK  GR     FS
Sbjct: 541 SLL--SQPCQIANMNIIPSASVGISLYPENGMEMDTLMNHADIAMHKAKNMGRGHFNFFS 598

Query: 260 DIENN 264
              NN
Sbjct: 599 AEMNN 603


>gi|317402689|gb|EFV83242.1| signaling protein [Achromobacter xylosoxidans C54]
          Length = 265

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 8/183 (4%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFF 134
           +  IS      +      + + SR D L+GLLN  A +              +   +   
Sbjct: 79  IARISDHYQNMMRDLNATLEETSRRDPLTGLLNRRALMELIKQEVQRAARGGQAFVVAML 138

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D+FK +ND +GH VGD+ +  L+  +          GR GGEEF      +  + A  
Sbjct: 139 DVDHFKAVNDRYGHEVGDRALVELAGAMRHSVREYDLCGRWGGEEFLVLLPATPPETAQG 198

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + + L   +    I++ +   + +T+S G+A     E  S  + RADQALY+AK+ GR+R
Sbjct: 199 VMDRLVGAVRALAIDVGADV-LRLTVSIGMAYHQLGETFSETLSRADQALYLAKQDGRDR 257

Query: 255 VVC 257
           V  
Sbjct: 258 VAL 260


>gi|261855750|ref|YP_003263033.1| response regulator receiver modulated diguanylate cyclase
           [Halothiobacillus neapolitanus c2]
 gi|261836219|gb|ACX95986.1| response regulator receiver modulated diguanylate cyclase
           [Halothiobacillus neapolitanus c2]
          Length = 547

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 77/194 (39%), Positives = 98/194 (50%), Gaps = 12/194 (6%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNE 127
           +I I  LL  +    L+       +     R D L+GLLNH+A        I      N+
Sbjct: 350 TIAIDDLLKMVRYRALRYRQSMAEK-----RSDSLTGLLNHNAIKDLVEAEIDRANRQNQ 404

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            LS+V  DID+FK +ND FGH  GD VI  LS+ L         VGR GGEEF      +
Sbjct: 405 PLSVVLIDIDHFKNVNDTFGHQAGDIVIRKLSNLLNTRLRRYDGVGRYGGEEFMITLPNT 464

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
            EQ AA L N LR     S I   +G ++  T SAGIA       ++++I  ADQ LYVA
Sbjct: 465 DEQTAAHLINRLRVQFGQSAIRTENGSNMLCTFSAGIASFPRFLDLTSLIEAADQHLYVA 524

Query: 248 KKSGRNRVVCFSDI 261
           K +GRNRVVC  + 
Sbjct: 525 KANGRNRVVCSEEA 538


>gi|171059398|ref|YP_001791747.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Leptothrix cholodnii SP-6]
 gi|170776843|gb|ACB34982.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Leptothrix cholodnii SP-6]
          Length = 720

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 77/204 (37%), Gaps = 30/204 (14%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFK 140
             + +  +  ++I  L+  D L+GL N    I                 +++  D+D FK
Sbjct: 253 QDVTDRRLIEDKIRHLANFDALTGLPNRRQLIWRAERALEHARRLGHPCALLLIDLDRFK 312

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-------------------FVGRLGGEEFA 181
            IND  GH VGD+++  +  +L                            V RLGG+EF 
Sbjct: 313 VINDTLGHGVGDELLMEIGRRLRSCVRHSDQLADMSIDATLLRSHRSLEAVARLGGDEFV 372

Query: 182 AAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYR 239
                 + E EA   A  + + +      +  G    +T S G+A        +  ++  
Sbjct: 373 TLLPEVADEPEALETAQRILEAMRA--PVVLGGAEYFVTASVGLAMFPRDGISVVDLLRN 430

Query: 240 ADQALYVAKKSGRNRVVCFSDIEN 263
           AD A+Y  K SGRN V  F    +
Sbjct: 431 ADMAMYAVKDSGRNNVKVFQPQMS 454


>gi|160895993|ref|YP_001561575.1| diguanylate cyclase [Delftia acidovorans SPH-1]
 gi|160361577|gb|ABX33190.1| diguanylate cyclase [Delftia acidovorans SPH-1]
          Length = 414

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 68/239 (28%), Positives = 100/239 (41%), Gaps = 15/239 (6%)

Query: 34  FFSIFIATVIFIANIFLF---YIGLTPFYGLEYILVENLSLVII-----SITISLLLGYI 85
           F+  ++ T+I +A I L+    + +T       +L   + L  +       T    + Y 
Sbjct: 162 FWLTWMGTLIAVAAIILWRGPLMRMTTDTAAGQLLAFGVVLGAVVRCSVQATFFRSMQYR 221

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
            G    +L  +  +I  L R D L+G+ N    I  L             L +   DID+
Sbjct: 222 LGIANDKLATALAQIEALLRHDDLTGVSNRRGVIERLHEVRTAAHDRGTVLCVALLDIDH 281

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND+FGH  GD+V+      L     +   VGR GGEEF      +   +A  L   
Sbjct: 282 FKRINDSFGHEGGDRVLRAFGTLLKSQLRSADGVGRYGGEEFLLVLPDTDLAQAGELLER 341

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           LR  I  +    + G    +T + G A+    E +   I RAD ALY  K  GRN  V 
Sbjct: 342 LRLRIAEAPWTQTLGEGARVTCTLGAAQYRAGESVEATIARADAALYRGKAQGRNCTVL 400


>gi|326625137|gb|EGE31482.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 655

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 64/273 (23%), Positives = 115/273 (42%), Gaps = 21/273 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIA--------NIFLFYIGLTPFYGL 61
           ++WL      E           ++   I IA + +          N  + + G+   +  
Sbjct: 112 ALWLTFRLRHEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLA 171

Query: 62  EYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
             + V  L+++ I++ +SL    +      +   L  +   ++QL+  D L+ L N    
Sbjct: 172 VLVSVVALTILGITLLVSLFDARLQARTALLASSLAQANQELAQLALHDTLTRLPNRVLL 231

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L          N   +++F D+D FK +ND +GH +GDK++  ++ +L         
Sbjct: 232 EDRLEQAISKANRENTSFALLFMDLDGFKTVNDAYGHDIGDKLLVAVTHRLNQPLSGQFT 291

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF   A  S+  EAA LA+ L   I+           + +T+S GIA      
Sbjct: 292 LARIGGDEFVLLAEVSAPDEAASLASALVHSIDA--PFTIDPYELVVTLSVGIALYPLDG 349

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +    +++ AD A+Y  K +GRN    F    N
Sbjct: 350 KNERELMFNADAAMYHTKHTGRNGYHFFQPSMN 382


>gi|221639437|ref|YP_002525699.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodobacter sphaeroides KD131]
 gi|221160218|gb|ACM01198.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodobacter sphaeroides KD131]
          Length = 816

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 88/187 (47%), Gaps = 12/187 (6%)

Query: 85  ISGSILKELFISYNRIS--QLSRIDCLSGLLNHSAF----ISSLGSY--NEKLSIVFFDI 136
           IS     E      ++    ++R D L+GL N   F      ++ S      ++++  D+
Sbjct: 360 ISARRQAEDDRVMAQLQVFHMARHDMLTGLPNRHYFGDCYQEAVASLAPERSVAVLMLDL 419

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAIL 195
           D FK +ND  GHPVGD+V+  ++++L     +   V RLGG+EFA       SEQEA  L
Sbjct: 420 DGFKTVNDTRGHPVGDQVLCEVANRLRTSVRSTDTVARLGGDEFAVIQTPIRSEQEACDL 479

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  L   I  S+     G    +  S GIA  R   +    I+  AD ALY AK++GR  
Sbjct: 480 ARRLIAAI--SKPFDLEGAVPEVGASVGIAFARGRGDSAEEIMRYADVALYAAKQAGRGT 537

Query: 255 VVCFSDI 261
              F + 
Sbjct: 538 FRVFDEA 544


>gi|207742363|ref|YP_002258755.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
 gi|206593753|emb|CAQ60680.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
          Length = 701

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/281 (22%), Positives = 114/281 (40%), Gaps = 25/281 (8%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY- 63
           L    ++W+      +S          ++   + I  + +       +  L  F G    
Sbjct: 151 LASGAALWIAFRLRRQSRRVRAMRAGAAVVMGLAIVGMHYTGMAAAGF-PLGSFCGAARG 209

Query: 64  -ILVENLSLVIISITISLLLGYISGSIL------------KELFISYNRISQLSRIDCLS 110
            + VE L+LVII +T+++L   +  S+L              L  +   ++ L+  D L+
Sbjct: 210 GVSVEWLALVIIVVTLAVLAMALVISVLDLRMEARTAVLATSLAKANKELAYLALHDSLT 269

Query: 111 GLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            L N       L              +++F D+D FK +ND +GH  GD ++A ++ ++V
Sbjct: 270 KLSNRLLLEDRLEQAIRSAGRNRGSFALMFLDLDGFKAVNDVYGHHAGDLLLADVARRIV 329

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   V R+GG+EF   A      +A  LA+    +    +  +  G ++ ++ S G
Sbjct: 330 ACVRLQDTVARVGGDEFVVLASVGEPADAGTLADA--LLAAAREPFLVDGHALRVSTSIG 387

Query: 224 IAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           IA           ++  AD A+Y AK +GR+    F    N
Sbjct: 388 IALYPGDGASQHDLLTNADAAMYHAKGTGRDTYCFFEASMN 428


>gi|152984841|ref|YP_001345776.1| hypothetical protein PSPA7_0381 [Pseudomonas aeruginosa PA7]
 gi|150959999|gb|ABR82024.1| hypothetical protein PSPA7_0381 [Pseudomonas aeruginosa PA7]
          Length = 323

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
              + +     + + +L+  D L+   N   F  S              L+ +  D+D F
Sbjct: 145 AEDITDKKRMESELQRLATTDVLTQSSNRRYFFDSAEAAFKECRREGIPLAFLLLDVDDF 204

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND FGH VGD+V+  ++             GR+GGEEFA    G  EQ A  +   L
Sbjct: 205 KKINDRFGHQVGDQVLQRIAQSGSAALRRGDLFGRIGGEEFAVLLPGCDEQTARQIGERL 264

Query: 200 RKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++ ++  +       S  IT+S G+   +   E +  +  RAD A+Y AK+ G++ +V 
Sbjct: 265 QREVQRLRFQ-EGEHSFGITVSQGLTVLQADDEGLGALYSRADAAMYSAKRQGKDCIVV 322


>gi|16766683|ref|NP_462298.1| signal transduction protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167993976|ref|ZP_02575069.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|16421949|gb|AAL22257.1| putative membrane domain protein involved in signal transduction
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|205328074|gb|EDZ14838.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261248551|emb|CBG26389.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995597|gb|ACY90482.1| putative signal transduction protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159937|emb|CBW19456.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914416|dbj|BAJ38390.1| putative signal transduction protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225190|gb|EFX50249.1| hypothetical protein ylaB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323131750|gb|ADX19180.1| putative signal transduction protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332990246|gb|AEF09229.1| putative signal transduction protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 699

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 64/273 (23%), Positives = 115/273 (42%), Gaps = 21/273 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIA--------NIFLFYIGLTPFYGL 61
           ++WL      E           ++   I IA + +          N  + + G+   +  
Sbjct: 156 ALWLTFRLRHEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLA 215

Query: 62  EYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
             + V  L+++ I++ +SL    +      +   L  +   ++QL+  D L+ L N    
Sbjct: 216 VLVSVVALTILGITLLVSLFDARLQARTALLASSLAQANQELAQLALHDTLTRLPNRVLL 275

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L          N   +++F D+D FK +ND +GH +GDK++  ++ +L         
Sbjct: 276 EDRLEQAISKANRENTSFALLFMDLDGFKTVNDAYGHDIGDKLLVAVTHRLNQPLSGQFT 335

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF   A  S+  EAA LA+ L   I+           + +T+S GIA      
Sbjct: 336 LARIGGDEFVLLAEVSAPDEAASLASALVHSIDA--PFTIDPYELVVTLSVGIALYPLDG 393

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +    +++ AD A+Y  K +GRN    F    N
Sbjct: 394 KNERELMFNADAAMYHTKHTGRNGYHFFQPSMN 426


>gi|21673931|ref|NP_661996.1| GGDEF domain-containing protein [Chlorobium tepidum TLS]
 gi|21647072|gb|AAM72338.1| GGDEF domain protein [Chlorobium tepidum TLS]
          Length = 403

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 83/182 (45%), Gaps = 9/182 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            S+  ++     ++ +L   D  + L N+  F       +     +N  +S+   DID F
Sbjct: 219 ASMCHDIEEKNRKLDELHIRDEKTNLYNYRHFKEHLIIDVERARRFNGDISLAMIDIDNF 278

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND +GH  GD+ +A +++ +           R GG+EFA     +    A  ++  L
Sbjct: 279 KNYNDRYGHVAGDRALARIAEIIRKECRMTDIPSRFGGDEFAILFPKTDRATALDISERL 338

Query: 200 RKIIENSQINISS-GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           R II        S  P   +T+S G+A         +++I  AD+ALY AK SG+N V+ 
Sbjct: 339 RNIIYAEPFEHESKQPGGQLTVSIGVASWLDDATDGTSLIVNADKALYKAKSSGKNMVLA 398

Query: 258 FS 259
           F+
Sbjct: 399 FT 400


>gi|56751038|ref|YP_171739.1| hypothetical protein syc1029_c [Synechococcus elongatus PCC 6301]
 gi|56685997|dbj|BAD79219.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 686

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 96/179 (53%), Gaps = 10/179 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            +     +   +S+ ++ D L+GL+N    I+ +         + ++ +++F D+D FK 
Sbjct: 510 DITSQKYTEQELSRQAKTDELTGLINRREAIARIQALCALDRRHGKEFAVLFCDLDCFKD 569

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND+FGH  GD V+  ++ ++ +   +  F  R+GG+EF     G  S + A ++A  LR
Sbjct: 570 VNDHFGHLAGDTVLQVVARRIKLAIRSNDFAARIGGDEFLVVLQGVHSLKNAVVIAEKLR 629

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++    I+  +G     T++ G+      E I T+I RAD A+Y  K+SGR+RV+ F+
Sbjct: 630 YVVAQ-PISTDAGCVAQ-TMTIGVTLIQPAETIDTLIARADAAMYQGKQSGRDRVIPFA 686


>gi|312962171|ref|ZP_07776663.1| GGDEF domain protein [Pseudomonas fluorescens WH6]
 gi|311283508|gb|EFQ62097.1| GGDEF domain protein [Pseudomonas fluorescens WH6]
          Length = 310

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 8/168 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y   ++ +  D L+   N  A   +L         +   LS++  DID+FK IND +GH 
Sbjct: 142 YRAATRSALRDPLTETGNRVAMDQTLQREIDMARRHLSPLSLLMLDIDHFKNINDTYGHA 201

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  +         V R GGEEF      +S + AA++   LR+    +Q  
Sbjct: 202 AGDNVLRTVATAIKSQLRNVDMVFRFGGEEFLILLSNTSREAAAMVGERLRQA-AQTQDY 260

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + G  I +T+S G +     E   +++ RAD ALYVAK+ GRNR+  
Sbjct: 261 WAEGERIALTVSLGCSTLLAAESAESLLRRADNALYVAKREGRNRLAM 308


>gi|239834110|ref|ZP_04682438.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239822173|gb|EEQ93742.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 803

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 9/187 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYF 139
           ++   L E   +  +I  ++R D L+ L N   F   L +       E  +++  D+D F
Sbjct: 354 LAVRDLTEKRAAQRQIEHMARHDALTDLPNRMFFEERLANAVARPSREPFAVLALDLDRF 413

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
           K +ND FGH  GD+V+  +S  L           R+GG+EF    +G  + + A  L+  
Sbjct: 414 KAVNDIFGHAEGDRVLKTVSSILKRCVNGIDTAARIGGDEFIILQVGVPQPRGARKLSEK 473

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVC 257
           + +     ++N    P+  + +S G+A   +    +  I   AD ALY AK  GR     
Sbjct: 474 ILEAFR-LELNTVLDPT-AVGVSIGVALYPNDGKDAEAIRHAADIALYRAKTEGRGLFAF 531

Query: 258 FSDIENN 264
           +S   + 
Sbjct: 532 YSPEMDQ 538


>gi|229592177|ref|YP_002874296.1| hypothetical protein PFLU4782 [Pseudomonas fluorescens SBW25]
 gi|229364043|emb|CAY51618.1| putative membrane protein [Pseudomonas fluorescens SBW25]
          Length = 352

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 72/269 (26%), Positives = 116/269 (43%), Gaps = 20/269 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIAT---VIFIANIFLFYIGLT---PFYGLEY 63
           +++         F+P T +   S+     +A     + I       +G       +GL +
Sbjct: 80  ALFSGFWAATLQFTPLTTVTLLSMVAMNNVAAGGKRLLIRGALAQVLGAAIGAVVFGLHF 139

Query: 64  ----ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
                LVE  + + +     + +G +   +  +L      +S LSRID L+GLLNH ++ 
Sbjct: 140 NPSVSLVEVYACLPMLTLYPMAIGMVCYQLAIKLSEHKRALSALSRIDSLTGLLNHGSWK 199

Query: 120 SSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L              +I   DID+FK+IND  GH VGD V+  LS +L          
Sbjct: 200 DLLHLKFHKCQQQQSHATIALIDIDHFKRINDTHGHIVGDAVLRQLSLELRRNLRENDLA 259

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-E 231
           GR GG+EF         ++AA +   +R+   N +      P + +++S G+A       
Sbjct: 260 GRYGGDEFCVILPQMPLEQAAQVMERMRETFSNYR--NPQIPELRVSLSIGLAGFQPSFT 317

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +  +  AD+ALY AK +GRNRV    D
Sbjct: 318 NAAMWLNAADRALYAAKDTGRNRVSVSDD 346


>gi|146284223|ref|YP_001174376.1| putative sensory box/GGDEF family protein [Pseudomonas stutzeri
           A1501]
 gi|145572428|gb|ABP81534.1| putative sensory box/GGDEF family protein [Pseudomonas stutzeri
           A1501]
          Length = 751

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 8/181 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFK 140
           S + +     +   +   +R D L+GL N       L       +    +++F D+D FK
Sbjct: 282 SQTDISARKAAEECLRHAARHDALTGLANRLHLDELLKEVQQRPHGRATALLFVDLDRFK 341

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
            IND+ GH  GD+V+  ++ +L+        + R GG+EF A     + E +A  +A  +
Sbjct: 342 LINDSLGHGAGDQVLVEVAQRLLRCLRPGDHLARFGGDEFVALLGDLACEADAERVAQRM 401

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++   Q       ++ ++ S GIA           +  AD ALY AK +G+++   F 
Sbjct: 402 --LVALRQPLQLGERTLSVSASIGIAPLQRDGQALNALQAADLALYRAKSAGKDQFALFC 459

Query: 260 D 260
           D
Sbjct: 460 D 460


>gi|325982978|ref|YP_004295380.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas sp. AL212]
 gi|325532497|gb|ADZ27218.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas sp. AL212]
          Length = 798

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 91/188 (48%), Gaps = 8/188 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDI 136
             I+   + E      +++  +  D L+GLLN   F + L         N+  ++++ D+
Sbjct: 347 AVITFRDVTEQRKLTLKLAYQAAHDSLTGLLNRKEFENRLSKILTSMRKNDMHALLYLDL 406

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK IND+ GH  GDK++  ++  L         + RLGG+EF        + +A  +A
Sbjct: 407 DQFKIINDSCGHSAGDKLLRQVTALLHSKLRARDTLARLGGDEFGVILEHCPKDQALQVA 466

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
           + LR++++N +     G +  I +S G+    H  + +   +  AD A Y AK+ GRNRV
Sbjct: 467 DTLRELVQNFRFQWR-GKTFTIGVSIGLFPITHGNQGLEHALNAADSACYAAKEQGRNRV 525

Query: 256 VCFSDIEN 263
             +  + +
Sbjct: 526 QIYQSVPH 533


>gi|229110945|ref|ZP_04240506.1| Sensory box/GGDEF [Bacillus cereus Rock1-15]
 gi|228672526|gb|EEL27809.1| Sensory box/GGDEF [Bacillus cereus Rock1-15]
          Length = 785

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 10/205 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           IL   +++V I I       Y+    +  +      I+ L+  D ++ + N   F   L 
Sbjct: 318 ILFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELD 377

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     +K  +++ D++ FK IND  GH +GDKV+  ++ +        + + R+G
Sbjct: 378 RSIKRAQKTQDKFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIG 437

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           G+EFA      +EQ+   L   L +I E  +  + +  S ++++S GIA         +T
Sbjct: 438 GDEFAIIVHNQTEQQLLDLCKTLFRITE--EPFVVNQHSFYLSLSIGIAVYPFGGINTTT 495

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++  AD A+Y AK+ G N V  + +
Sbjct: 496 LLQHADIAMYSAKEKGNNAVCMYDE 520


>gi|152989885|ref|YP_001355607.1| hypothetical protein NIS_0135 [Nitratiruptor sp. SB155-2]
 gi|151421746|dbj|BAF69250.1| hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 622

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 54/180 (30%), Positives = 92/180 (51%), Gaps = 11/180 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
            I+      +++    + + ++ D L+ L N SA+   L         Y    S++  DI
Sbjct: 442 LITCEDYTAVYLREQNLIKAAQTDVLTNLPNRSAYQMKLEEQMSLFERYQTVFSMLCIDI 501

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND +GH  GDKV+  ++  +     +   V R+GGEEF A    +    A   A
Sbjct: 502 DHFKKINDTYGHKAGDKVLQEVAKIMRKTLRSSDTVFRIGGEEFVALLPETDLVAAKQAA 561

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR +I++ Q+ +    S ++T+S G+ +    +   +I  R D+ LY AK++GRN+VV
Sbjct: 562 QKLRTMIQD-QMKLG---SYNVTVSIGVTQVNFDDTYDSIFMRCDKCLYHAKQNGRNQVV 617


>gi|91791807|ref|YP_561458.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91713809|gb|ABE53735.1| GGDEF domain [Shewanella denitrificans OS217]
          Length = 337

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 69/274 (25%), Positives = 126/274 (45%), Gaps = 19/274 (6%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIG----LT 56
           M R+L D    W  H       +   F +Y +   S      + +  ++L  +G      
Sbjct: 60  MQRALNDNHKPWEAHLYVYGLTAIVMFAVYVARLESFMFCWALILPILYLLMLGKQTATL 119

Query: 57  PFYGLEYILVENLSL--------VIISITISLLLGYISGSILKE-LFISYNRISQLSRID 107
           P   L   ++ ++S+        +I++ + S  L ++   + +     S N +  L+ +D
Sbjct: 120 PASFLFIFVLIDISIKSDVMPWPMILNFSCSYALIWLIAYVYENNRERSENELQTLALLD 179

Query: 108 CLSGLLNHSAFISSLGSYNE----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            L+   N  A      S ++     + I+  D+DYFK IND +GH  GD V+   + Q+ 
Sbjct: 180 PLTQHYNRLALSKRFQSLSQTSTLPMCILLLDLDYFKVINDTYGHEAGDIVLKACAKQIS 239

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
            + G      R+GGEEF          +A  LA  +RK+I +++  +    ++ +T+S G
Sbjct: 240 SIAGYSDT-FRVGGEEFCVLVQAEHANQAVELAESIRKLISDTEF-LFENQNLAVTVSVG 297

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +A    K  +S ++ +AD+ LY+AK  GRN+V+ 
Sbjct: 298 VATFEAKMTLSNLLAKADKQLYLAKDLGRNKVMF 331


>gi|34495695|ref|NP_899910.1| hypothetical protein CV_0240 [Chromobacterium violaceum ATCC 12472]
 gi|34101550|gb|AAQ57919.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 375

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 5/168 (2%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           L   +NR+   + +D L+G  N  A    + +L +  E++ +V  DID+FK +ND +GHP
Sbjct: 207 LQRQHNRLEDAANLDPLTGAGNRRALQYWLRTLEASVERVCVVMLDIDHFKSVNDRYGHP 266

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  L+  L         + R GGEEF      +   +A   A  L +        
Sbjct: 267 AGDAVLQALAMVLRSGIRDNDMLIRYGGEEFCLLMPDADIDDAVQAAERLLQAFRQLA-P 325

Query: 210 ISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +   P +  T SAG  E  C ++  +    +ADQALY+AK+ GR+RV 
Sbjct: 326 LPGHPELRCTFSAGAHEWDCRRQDFAEAQQKADQALYLAKQDGRDRVR 373


>gi|39937172|ref|NP_949448.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009]
 gi|39651030|emb|CAE29553.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris
           CGA009]
          Length = 297

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 11/180 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDID 137
           +      +L +  + +   +  D L+GL N + F             Y  +L+++ +DID
Sbjct: 108 LQMQRRADLQVLADNLEVKATTDPLTGLFNRAKFDLVLRHELIRAERYGTQLALIVYDID 167

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK++ND  GH  GD+V+  LS+ +         + R GGEEF      +    A ++A+
Sbjct: 168 HFKEVNDAHGHQAGDRVLVQLSEIVSCEIRQTDLLVRWGGEEFVVVLPATDGMTACLVAD 227

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            L + I  +  ++       IT S G+++    + + T++ R D ALY AK +GRNRV  
Sbjct: 228 KLGRAIAQATFDLVG----TITCSFGVSDFVIGDSVDTLLARTDNALYRAKMNGRNRVEF 283


>gi|300115382|ref|YP_003761957.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Nitrosococcus watsonii C-113]
 gi|299541319|gb|ADJ29636.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosococcus watsonii C-113]
          Length = 997

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 9/189 (4%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIV 132
           +L   +    + E       I+  ++ D L+GL+N   F   L          N + ++ 
Sbjct: 531 VLGAVLVFHDVSEQRRLQREIAHQAQHDALTGLVNRREFEQRLQRVIEAAQTQNSEHALC 590

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           + D+D FK +ND  GH  GD ++  L+            + RLGG+EF           A
Sbjct: 591 YLDLDQFKVVNDTCGHTAGDSLLQQLATLFEKNIRRHDTLARLGGDEFGLLLEHCPLDSA 650

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSG 251
             + N LR+ +E+ +    +G    I +S G+         +++++  AD A YVAK SG
Sbjct: 651 LRIVNTLRQTVEDFRF-CWNGQYFRIGVSIGLVPINSANSSVASVLRAADSACYVAKDSG 709

Query: 252 RNRVVCFSD 260
           RNR+  + +
Sbjct: 710 RNRIHIYRE 718


>gi|253700717|ref|YP_003021906.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. M21]
 gi|251775567|gb|ACT18148.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. M21]
          Length = 953

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 81/182 (44%), Gaps = 11/182 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
              + E       I   ++ D L+ L N   F       ++      + L+++F D+D+F
Sbjct: 506 ARDVTERTRMEEIIKHQAQHDTLTDLPNRKLFGDFLNLELAQARRNRKSLAVLFMDLDHF 565

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
           K++ND+ GH  GD+++  ++ +L         V R+ G+EF       ++  +  I+   
Sbjct: 566 KKVNDSLGHAAGDRLLQAVAQRLKRCVRESDTVARISGDEFNVLMPDLTQTDDVGIVVGK 625

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           +  +       +  G  + +T S G++      +    ++ +AD A+YVAK++  N    
Sbjct: 626 IMGVFRT--PFVLEGAELKVTTSVGVSMFPDDGDSAQELLQKADGAMYVAKQTPGNSYQF 683

Query: 258 FS 259
           ++
Sbjct: 684 YN 685


>gi|192359035|ref|YP_001983849.1| EAL domain-containing protein [Cellvibrio japonicus Ueda107]
 gi|190685200|gb|ACE82878.1| EAL domain protein [Cellvibrio japonicus Ueda107]
          Length = 571

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 18/201 (8%)

Query: 80  LLLGYISGSILK-------ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SY 125
           L+ G I   +L+       E   +   +++L+  D L+ + N   F   L          
Sbjct: 106 LIKGQIDHQLLERCLRYAIERKRTEQHLTRLAHYDPLTDIPNRILFGDRLEHAINLAERD 165

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
               +++F D++ FKQ+NDNFGH  GD +I   +++L         V R+GG+EF     
Sbjct: 166 GTSFTLMFIDLNGFKQVNDNFGHDAGDAIIRICAERLSSCLRRSDSVARMGGDEFTLLLQ 225

Query: 186 GSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQA 243
                 + A +A  + + +  SQ    +G  + +  S GIA          T++  AD A
Sbjct: 226 NIENHTDVAHIAEKVIRTL--SQPADINGHLVVVGASIGIAMYPQAGRDADTLLKHADMA 283

Query: 244 LYVAKKSGRNRVVCFSDIENN 264
           +Y AK+   +    F+++ N 
Sbjct: 284 MYRAKQEEGSSYRFFTEVMNQ 304


>gi|152996744|ref|YP_001341579.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150837668|gb|ABR71644.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 714

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 79/169 (46%), Gaps = 8/169 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
              + + S  D L+GL N   F       I++     E LS++  DIDYFK  ND +GHP
Sbjct: 543 REELQRFSYEDELTGLKNRRFFSEVMEHEITAAEQNQEPLSLLICDIDYFKTFNDTYGHP 602

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+ +  L+  L   F     V RLGGEEF         ++    A +LR  +E +QI 
Sbjct: 603 AGDEALKTLASLLSPFFYEGNIVCRLGGEEFVVVMPRVKREDCLRKAEELRAAVEKTQIE 662

Query: 210 ISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
                  +ITIS GI+           +  + D ALY AK+SGRN +  
Sbjct: 663 YEGHLLENITISIGISSWPELISDPRQLFQQTDSALYQAKESGRNCIRV 711


>gi|56461440|ref|YP_156721.1| signal protein [Idiomarina loihiensis L2TR]
 gi|56180450|gb|AAV83172.1| Signaling protein with membrane-bound sensor domain and GGDEF
           domain [Idiomarina loihiensis L2TR]
          Length = 398

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 110/247 (44%), Gaps = 22/247 (8%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
           F+I   I+   +  I   +L Y   + F    +    +L + ++++       + + +  
Sbjct: 153 FAIGLLIWTVAMGGIWATYLLYKSASAFAWSHWAAWLSLMVFLLAVQYQQASTWAALAAS 212

Query: 91  KELFISY-NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
             L ++  +++ +L+ ID L+GL    A +S L    ++ ++   D+D+FK+ ND +GH 
Sbjct: 213 AGLLLALADQMLKLAYIDELTGLPQRRALMSQLQHLRKRSAVCMLDVDHFKKFNDRYGHE 272

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+V+  L   L           R GGEEF      + E++   L   +R  + N  + 
Sbjct: 273 VGDQVLRLLGRILKE--HGGFKAYRYGGEEFTLVFFHNDEEKLKNLLESVRSQVANYPLK 330

Query: 210 ISS-------------------GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +                       ++ +TIS G   +   +   +I+ RAD+ LY AKK+
Sbjct: 331 LREPSRPESKTKGKEARGKKEKSKTVKVTISLGATVKEPDDTADSILKRADENLYSAKKA 390

Query: 251 GRNRVVC 257
           GRNRV  
Sbjct: 391 GRNRVSV 397


>gi|83311629|ref|YP_421893.1| GGDEF domain-containing protein [Magnetospirillum magneticum AMB-1]
 gi|82946470|dbj|BAE51334.1| FOG: GGDEF domain [Magnetospirillum magneticum AMB-1]
          Length = 386

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 73/256 (28%), Positives = 110/256 (42%), Gaps = 27/256 (10%)

Query: 16  EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-------LVEN 68
            + L    PH   +  + +       V F   +F    GL+  + LE++       +   
Sbjct: 137 RELLWRTPPHRLAMRLAGW-------VYFANALFFLVRGLSIGFDLEFMAGKMSYGMTVV 189

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121
            S+  + +TIS+ L  +   +  E   +   +++ +  D L+G LN  AF       I  
Sbjct: 190 ASMWWLCVTISVTLCMVL--MASERLQA--DLNEQASRDPLTGALNRRAFASLGEREIVR 245

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                  LS++  D+D+FKQIND  GH  GD+V+   +     +        R GGEEF 
Sbjct: 246 ARRTASPLSLLMIDMDHFKQINDCLGHGGGDEVLVLFATLAGRILRAEDLFCRFGGEEFL 305

Query: 182 AAALGSSEQEAAILANDLRKII--ENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           A    SS  EA  +A  LR     E + ++        +T+S GIA     E +   I R
Sbjct: 306 ALLPSSSLMEAMGVAERLRAAFSAEGAGLDSEGKLPFPMTLSVGIAALAADEDMEAAIRR 365

Query: 240 ADQALYVAKKSGRNRV 255
           AD ALY AK  GRNR 
Sbjct: 366 ADAALYRAKDLGRNRC 381


>gi|87122548|ref|ZP_01078427.1| sensory box protein [Marinomonas sp. MED121]
 gi|86162190|gb|EAQ63476.1| sensory box protein [Marinomonas sp. MED121]
          Length = 1052

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 11/176 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           S S + +L  S +++  L+  D L+GL N +     L          +++L++ F D+D 
Sbjct: 590 SFSDISKLKRSQHKLQHLAHHDALTGLPNRTFLTQKLSGMISNARKQDKQLAVAFLDLDR 649

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILAN 197
           FK IND  GH  GDK++  ++ ++         V R+GG+EF      S   EA      
Sbjct: 650 FKNINDTLGHLFGDKLLRVIAQRMYNQLKENEVVARIGGDEFILILDPSDGLEALSARLE 709

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII-YRADQALYVAKKSGR 252
            L + I+  ++    G  I    S G++        S ++   AD ALY AK++GR
Sbjct: 710 ALNQKIQ--EMVYIDGKEIMTCASIGVSLYPEDGTSSELLFQHADTALYSAKEAGR 763


>gi|315127837|ref|YP_004069840.1| hypothetical protein PSM_A2776 [Pseudoalteromonas sp. SM9913]
 gi|315016351|gb|ADT69689.1| hypothetical protein PSM_A2776 [Pseudoalteromonas sp. SM9913]
          Length = 843

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 12/187 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNE----KLSIVFFDIDYFKQ 141
           + E   +  ++  L+  D L+GL N   F   L     S N     + ++++ D+D+FK 
Sbjct: 392 IHERKQAELQLRHLALHDTLTGLHNRYYFDQQLNYICQSENTYANIEHALIYIDLDHFKI 451

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD V+  ++   +        + R+GG+EFA     ++  +A ++A  +  
Sbjct: 452 INDSKGHQQGDIVLKEVAQLFIANISNEHLICRVGGDEFAVILKNTNLLDAHLIAEGICS 511

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS- 259
            IE +Q   S      I+ S G+ +        +  + ++D ALY+AK  GRN V C+S 
Sbjct: 512 AIEGNQFK-SEDQVYSISCSIGLTQITADNCDPNECLKQSDIALYIAKNLGRNLVHCYSK 570

Query: 260 -DIENNT 265
            D ENN 
Sbjct: 571 QDGENNA 577


>gi|310780162|ref|YP_003968494.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
 gi|309749485|gb|ADO84146.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
          Length = 540

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 89/184 (48%), Gaps = 8/184 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           S   +++L +   +  +    D L+G  N   F       +  +  Y+    ++  DID+
Sbjct: 350 SQQTIEKLQVMLRKSDKEIEKDFLTGSYNRKGFTKIANLELERMKRYDIDACVMMMDIDF 409

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+ ND +GH  GD V+      +         +GR GGEEF      +  + A + A  
Sbjct: 410 FKKFNDTYGHACGDFVLRSFVRVVTKNVRLSDIIGRWGGEEFLVLLPETDYKGALLAAEK 469

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +RK++E  ++      S++IT++ G++    ++P+   +  AD A+Y  K+ GRNRVV F
Sbjct: 470 VRKMVER-EVFYYHKQSLNITVTIGVSTLNVRKPLEKAVAEADAAMYRGKEDGRNRVVGF 528

Query: 259 SDIE 262
            DI 
Sbjct: 529 QDIM 532


>gi|205358891|ref|ZP_02665133.2| AdrA protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205340080|gb|EDZ26844.1| AdrA protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
          Length = 365

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 12/232 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            F++ +  ++    + L   GL P       L   LSL +I I   LL  ++S     +L
Sbjct: 136 LFTVGMGLLLASCLVTLQLTGL-PVAMRSSSLEVTLSLPVI-ILYPLLFAWVSYQTAIKL 193

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
                R+  +S  D ++G+ N   +             ++ + +++  DID+FK IND +
Sbjct: 194 AEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFDHSRRHHREATLLIIDIDHFKSINDTW 253

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ I  L+ QL +       +GR GG+EFA    G+    A    + + + +   
Sbjct: 254 GHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEFAVIMCGTPADSAITAMSRVHERLNTL 313

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++     P + + IS G+A    +       +  AD ALY AK +GRNR   
Sbjct: 314 RLP--GAPQVMLRISVGVAPLTPQIGHYREWLKSADMALYKAKNAGRNRTEV 363


>gi|92114132|ref|YP_574060.1| diguanylate cyclase with PAS/PAC and GAF sensors [Chromohalobacter
           salexigens DSM 3043]
 gi|91797222|gb|ABE59361.1| diguanylate cyclase with PAS/PAC and GAF sensors [Chromohalobacter
           salexigens DSM 3043]
          Length = 574

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 56/194 (28%), Positives = 93/194 (47%), Gaps = 12/194 (6%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------G 123
           SL+++    S  L ++  ++ ++L  +   ISQ    D L+GLLN   F  ++       
Sbjct: 374 SLIVVLRDRSPYLQHLR-TVTRKLAKAEEMISQ----DALTGLLNRFGFKQAIDEFMVEA 428

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                 +++  DID+FK IND +GH +GD+ +  ++ +L         V R GGEEF   
Sbjct: 429 ERGVPFALLIADIDHFKDINDTYGHQLGDEALKIVASRLAEQLRDGDAVARYGGEEFCML 488

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
                E     +A  +R+ +  + + +  G  + +TIS G           ++  RAD+A
Sbjct: 489 MT-VPEDRVVEVAERIRRTVAATPVTLDDGKELALTISIGATYHTPGLDEDSMFERADEA 547

Query: 244 LYVAKKSGRNRVVC 257
           LY AK+ GRNR V 
Sbjct: 548 LYEAKEYGRNRTVM 561


>gi|159186248|ref|NP_356033.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
 gi|159141382|gb|AAK88818.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
          Length = 779

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 91/190 (47%), Gaps = 10/190 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDY 138
           ++   L E   +   I  L+R D L+GL N + F + L          ++ +++  D+D 
Sbjct: 335 MAIRDLTEKREAQREIEYLARHDVLTGLSNRTMFQTRLHQQIDNGDEEDEFALLALDLDR 394

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILAN 197
           FK +ND FGH  GD+V+  ++  L         V RLGG+EF    A  +   EA +LA 
Sbjct: 395 FKAVNDIFGHAEGDRVLKKVAAILDECARAGDVVARLGGDEFVILTARHTKADEARLLAE 454

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  +    ++N+ + P+  + +S GIA      +   +I++ AD ALY AK  GR  + 
Sbjct: 455 TILGMFA-LKMNVVNDPT-AVGVSIGIAVFPRDGQDHESIMHAADLALYRAKMGGRGILA 512

Query: 257 CFSDIENNTC 266
            +  + +   
Sbjct: 513 FYDPLMDQEA 522


>gi|56752006|ref|YP_172707.1| hypothetical protein syc1997_c [Synechococcus elongatus PCC 6301]
 gi|56686965|dbj|BAD80187.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 664

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 79/192 (41%), Gaps = 21/192 (10%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           +      +  +L  +  ++ +L++ D L+GL N   F   L             L ++  
Sbjct: 469 IAIQQARLYAQLAAANQQLLRLAQSDGLTGLANRRHFDQCLDIEWQRAIREQHPLGLILI 528

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAA 193
           DID FKQ ND +GH  GD  +  ++  L  V       V R GGEEF      ++EQ   
Sbjct: 529 DIDCFKQFNDTYGHQAGDDCLKAVATALTQVIARPADLVARYGGEEFVVILPNTNEQGIL 588

Query: 194 ILANDLRKIIENSQINISSGPSIH--------ITISAGIAERCHKEPISTIIYRADQALY 245
            +A  +R  ++  +I   S             +T           +    +I  ADQALY
Sbjct: 589 QIAESMRSAVQQLKIPHRSSSVCSSVSLSLGAVT-----WVPTPHKSPEALIGAADQALY 643

Query: 246 VAKKSGRNRVVC 257
            AK+ GRNRV  
Sbjct: 644 QAKELGRNRVCL 655


>gi|153011143|ref|YP_001372357.1| diguanylate cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC
           49188]
 gi|151563031|gb|ABS16528.1| diguanylate cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC
           49188]
          Length = 786

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 9/187 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYF 139
           ++   L E   +  +I  ++R D L+ L N   F   L         E  +++  D+D F
Sbjct: 336 LAVRDLTEKRTAQRQIEHMARHDTLTDLPNRMFFEERLANAVARRSREPFAVLALDLDRF 395

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
           K +ND FGH  GD+V+  +S  L           R+GG+EF    +G  + + A  L+  
Sbjct: 396 KAVNDIFGHAEGDRVLKTVSSILKRSINGIDTAARIGGDEFIILQVGVPQPKGARKLSEK 455

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVC 257
           +      S++N    P+  + +S G+A   +    +  I   AD ALY AK  GR  V  
Sbjct: 456 ILDTFR-SELNTVLDPT-AVGVSIGVAVYPNDGKDAEAIRHAADIALYRAKTEGRGMVAF 513

Query: 258 FSDIENN 264
           +S   + 
Sbjct: 514 YSPEMDR 520


>gi|87120134|ref|ZP_01076030.1| probable sensory transduction system regulatory protein
           [Marinomonas sp. MED121]
 gi|86164836|gb|EAQ66105.1| probable sensory transduction system regulatory protein
           [Marinomonas sp. MED121]
          Length = 549

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 92/178 (51%), Gaps = 10/178 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L  +  ++  LS +D L+ + N   +  +L          +E LS++ FDID FK+ N
Sbjct: 366 EQLEQANYKLKVLSELDPLTRIANRRLYNRTLIKEIAMAKRTSEPLSLLVFDIDDFKKYN 425

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DN+GH  GD ++  ++  L   +  T  FV R GGEEF A    + E+ A ++A  +R  
Sbjct: 426 DNYGHDNGDVILQEVAKILTNSITRTTDFVARYGGEEFVAILPATDEKGAFLVAERVRIN 485

Query: 203 IENSQINISSGPSIH-ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           IE   +       +  +T+S GIA     +     +  +AD ALY AK+ GRN+V+ +
Sbjct: 486 IEAENLEHIHSSVLPCVTVSVGIATLKGAQLCKKELFQQADLALYKAKEGGRNQVITY 543


>gi|229156115|ref|ZP_04284214.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342]
 gi|228627436|gb|EEK84164.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342]
          Length = 785

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 96/205 (46%), Gaps = 10/205 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           IL   +++V I I       Y+    + ++      I+ L+  D ++ + N   F   L 
Sbjct: 318 ILFWYVTIVPIMIEGQAFGSYVMVKDITKMKQQQEEINYLAFHDTVTEIGNRIFFQQELD 377

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     +K  +++ D++ FK IND  GH +GD+V+  ++ +        + + R+G
Sbjct: 378 RSIKRAQKTKDKFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPSLPLARIG 437

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           G+EFA      +E++   L   L +I E  +  + +  S ++++S GIA         +T
Sbjct: 438 GDEFAIIVHNRTEKQLLDLCETLFRITE--EPFVVNQHSFYLSLSIGIAVYPFGGINTTT 495

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++  AD A+Y AK+ G N V  + +
Sbjct: 496 LLQHADIAMYSAKEKGNNAVCMYDE 520


>gi|119471269|ref|ZP_01613772.1| PAS sensor diguanylate cyclase/phophodiesterase [Alteromonadales
           bacterium TW-7]
 gi|119445735|gb|EAW27018.1| PAS sensor diguanylate cyclase/phophodiesterase [Alteromonadales
           bacterium TW-7]
          Length = 739

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 57/194 (29%), Positives = 90/194 (46%), Gaps = 12/194 (6%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLS 130
           I+ L+G  +   +     S  ++S  S  D L+GL N   F                  +
Sbjct: 293 ITRLVG--THVDITARKKSEEKLSYQSSHDSLTGLANRREFKRRVELLLSVAAEKRVDHA 350

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           + + D+D FK +ND  GH  GD+++  L   L  V      V RLGG+EFA      S  
Sbjct: 351 LCYMDLDQFKVVNDTCGHLAGDELLRQLGSLLQKVVRKTDVVARLGGDEFAVLMENCSFD 410

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKK 249
            A  + + ++K IE+ +  +  G S  I +S G+ +   K    + ++  AD A Y+AK+
Sbjct: 411 NAHRVTSLIQKEIEDYRF-VWEGRSFRIGVSMGLIQITDKYVDFTEVLKLADVACYIAKE 469

Query: 250 SGRNRV-VCFSDIE 262
            GRNR+ V + D E
Sbjct: 470 KGRNRIHVHYDDDE 483


>gi|54293866|ref|YP_126281.1| hypothetical protein lpl0922 [Legionella pneumophila str. Lens]
 gi|53753698|emb|CAH15156.1| hypothetical protein lpl0922 [Legionella pneumophila str. Lens]
          Length = 771

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 87/185 (47%), Gaps = 11/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
            + +     +++ Q +  D L+ L N    +  +     +       L+ +F D+D FK 
Sbjct: 325 DVTQRRDMEDQLLQQATYDSLTNLPNRVLLMDRVEQAILQARKNKAILAFLFLDLDRFKL 384

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLR 200
            ND  GH +GDK++  ++++L++V      V RLGG+EF           EA  +A ++ 
Sbjct: 385 TNDTLGHSMGDKLLQAIANRLLIVTEDFDTVARLGGDEFVILLTDIDNMLEAETIAQNIL 444

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           KIIE   I I    S+ IT S GI+      +   +++  AD ++Y AK +GRN    + 
Sbjct: 445 KIIEK-PIQI-DQHSLKITGSLGISFYPRDGDDYESLMKSADLSMYHAKDTGRNNYRVYE 502

Query: 260 DIENN 264
              N 
Sbjct: 503 PEMNR 507


>gi|189346760|ref|YP_001943289.1| diguanylate cyclase [Chlorobium limicola DSM 245]
 gi|189340907|gb|ACD90310.1| diguanylate cyclase [Chlorobium limicola DSM 245]
          Length = 419

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 9/183 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           K++     ++ +L   D  + L N+  F   L          ++K+S+   DID+FK  N
Sbjct: 233 KDIEAKNKKLDELYIRDEKTNLYNYRHFKEHLIMEIERSKRLDDKVSMAMIDIDHFKLYN 292

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+V+  L+  +     T     R GGEEFA     +    A  +++ LR II
Sbjct: 293 DENGHVAGDRVLEQLAGIIGNTCRTSDMPSRFGGEEFAVLFPRTGIDTAMQISDRLRMII 352

Query: 204 ENSQINIS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
               ++     PS  +T+S GIA      +   T++  AD+ALY AK +GRNRV  FS I
Sbjct: 353 SAEPVDHEKKQPSGRLTVSIGIATFPDDAQDWYTLVNNADRALYQAKSAGRNRVTAFSTI 412

Query: 262 ENN 264
           ++ 
Sbjct: 413 KSK 415


>gi|303246217|ref|ZP_07332497.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio fructosovorans JJ]
 gi|302492280|gb|EFL52152.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio fructosovorans JJ]
          Length = 300

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 83/175 (47%), Gaps = 11/175 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           EL  + + + + + ID L+ + N   F +               LS++  DID+FK+ ND
Sbjct: 122 ELKRARDLLEEQAFIDSLTAIPNRRRFDAVLDKEWRRAQRNGAPLSLILLDIDFFKKYND 181

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           N+GH  GD  +  +   L         FV R GGEEFA    G+  Q A   ++ +R  I
Sbjct: 182 NYGHQQGDDCLRRVGWSLKESVRRAADFVARYGGEEFAVILPGTDTQGALDASDTIRLRI 241

Query: 204 ENSQINI-SSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRV 255
            +  I    S  + H+T+S G+A    +       II  ADQALY AK+ GRN V
Sbjct: 242 SSLAIPHEHSSVAPHVTVSLGVATSYPERNHGPGEIIDAADQALYRAKEEGRNTV 296


>gi|256785035|ref|ZP_05523466.1| membrane associated phophodiesterase [Streptomyces lividans TK24]
          Length = 701

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 80/197 (40%), Gaps = 17/197 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN------------EKLSIV 132
            +   + E      ++   +  D L+ L N + F   +                   +++
Sbjct: 185 FNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTRRVQQALSGRRASDRGAALRGTAVL 244

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F D+D FK +ND  GH  GD+++   + +L           RLGG+EFAA  +G   ++ 
Sbjct: 245 FIDLDGFKGVNDTIGHQAGDELLVQAARRLHEAVRKGDTASRLGGDEFAALIVGDGARDR 304

Query: 193 AILANDLRKIIENSQINIS-----SGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
           A     +R++ +  ++ +S      G  + +  S G+A          ++  AD A+Y A
Sbjct: 305 AAREGHIRELADRLRLTLSQPYLIDGNEVRVNASIGVAFAEPGLGAGELLRNADLAMYRA 364

Query: 248 KKSGRNRVVCFSDIENN 264
           K  G+ RV  +      
Sbjct: 365 KAGGKGRVELYRPQMQQ 381


>gi|239908384|ref|YP_002955126.1| putative signaling protein [Desulfovibrio magneticus RS-1]
 gi|239798251|dbj|BAH77240.1| putative signaling protein [Desulfovibrio magneticus RS-1]
          Length = 519

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 55/173 (31%), Positives = 82/173 (47%), Gaps = 11/173 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDN 145
           L  S  R+++ S +D L+G+ N   F  +L     +       LS+V  DID+FK  ND 
Sbjct: 339 LTASNKRLAEQSLLDGLTGIANRRRFDEALAREYRRHARGGASLSLVLIDIDHFKAFNDR 398

Query: 146 FGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD  +  ++  L   V      V R GGEEFA     +    AA +A  LR+ + 
Sbjct: 399 YGHLHGDACLRQVAGVLRQNVTRAGDLVARYGGEEFACILAETDAPSAAAMAERLRQAVA 458

Query: 205 NSQINISSGPS-IHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNR 254
              I   + P+   +TIS G A            ++ RAD+ LY AK +GR++
Sbjct: 459 ALDIPHEASPTACRVTISCGAATVRCLPGGSPLELLARADEQLYRAKAAGRDQ 511


>gi|254470638|ref|ZP_05084041.1| diguanylate cyclase/phosphodiesterase [Pseudovibrio sp. JE062]
 gi|211959780|gb|EEA94977.1| diguanylate cyclase/phosphodiesterase [Pseudovibrio sp. JE062]
          Length = 972

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 84/183 (45%), Gaps = 11/183 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
            + +     + +S L+  D L+ L N       L          +E   I++ D+D FK 
Sbjct: 515 DITDRQRISDHLSYLATHDALTKLPNRLLMNERLQEMKQAALEQDEHFGILWMDLDEFKT 574

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLR 200
           IND+ GH VGDK++  ++  L         V RLGG+EFA  + L +S ++   LA ++ 
Sbjct: 575 INDSLGHAVGDKLLVHVAKILREKVTNKEMVARLGGDEFAILSKLPASREQLEQLAKEVL 634

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           K++ +       G  I +  S GIA      + +  +I  AD ALY AK  GRN    F 
Sbjct: 635 KVVASPCF--LEGHEIVVAASVGIAMFSREHQNVDELIRFADLALYQAKNDGRNTFRFFE 692

Query: 260 DIE 262
           D  
Sbjct: 693 DDM 695


>gi|152970532|ref|YP_001335641.1| hypothetical protein KPN_01980 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150955381|gb|ABR77411.1| hypothetical protein KPN_01980 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 391

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 117/258 (45%), Gaps = 17/258 (6%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE 67
            +++W      L S S    + +FS  F  F +  +F     L   G       +    E
Sbjct: 139 LMAVWFITLILLISLSKLRNIFWFSGAF--FCSAYLFTLFQLLSTAGELDQTWYQARFFE 196

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
            L  + + I + L+  +I   + +E    Y    Q S  D L+ L N S F  +L     
Sbjct: 197 TLCTLFL-ILVLLVDVFI---LYRESNHKYVHSYQNSIRDPLTRLYNRSFFYDTLNQQLA 252

Query: 126 ----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                  LS++  D+D+FK+IND++GH  GDKVI F +  L           R+GGEEFA
Sbjct: 253 KVNAQHPLSVLISDLDHFKRINDSYGHVAGDKVIQFAASVLESHSRVDDAAARIGGEEFA 312

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRA 240
              + + E+EA  +A  +R  +   + ++       +TIS G+     +       + RA
Sbjct: 313 LLLVNTGEKEAQAIAERIRLAVSAGESHLPE----RMTISMGVYTTYDNSVTAEACVQRA 368

Query: 241 DQALYVAKKSGRNRVVCF 258
           D+A+Y AK +GRN+V+ +
Sbjct: 369 DEAMYEAKNNGRNQVIVW 386


>gi|86158815|ref|YP_465600.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775326|gb|ABC82163.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 455

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 4/166 (2%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            ++  L+ +D L+ L N      +L          S++F D+D+FK +ND  GH  G ++
Sbjct: 278 RQVEHLAYLDDLTHLYNTRYLDMALEREMQSGRPFSVLFMDLDHFKTVNDQHGHLSGSRL 337

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  L         + R GG+E+    +G        +A  +R+ IE+ +     G 
Sbjct: 338 LVEVARVLRSCVRDEDVLVRYGGDEYVVLLVGIDSGGGLKVAERVRRAIEDHRFLSREGA 397

Query: 215 SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +T S G+A    H +  S I+  AD+A+Y  K+S RN V   S
Sbjct: 398 RVRVTASIGLASYPEHAQEKSEILDLADRAMYRGKRSSRNVVYMAS 443


>gi|81299301|ref|YP_399509.1| diguanylate cyclase with PAS/PAC sensor [Synechococcus elongatus
           PCC 7942]
 gi|81168182|gb|ABB56522.1| diguanylate cyclase with PAS/PAC sensor [Synechococcus elongatus
           PCC 7942]
          Length = 681

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 96/179 (53%), Gaps = 10/179 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            +     +   +S+ ++ D L+GL+N    I+ +         + ++ +++F D+D FK 
Sbjct: 505 DITSQKYTEQELSRQAKTDELTGLINRREAIARIQALCALDRRHGKEFAVLFCDLDCFKD 564

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND+FGH  GD V+  ++ ++ +   +  F  R+GG+EF     G  S + A ++A  LR
Sbjct: 565 VNDHFGHLAGDTVLQVVARRIKLAIRSNDFAARIGGDEFLVVLQGVHSLKNAVVIAEKLR 624

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++    I+  +G     T++ G+      E I T+I RAD A+Y  K+SGR+RV+ F+
Sbjct: 625 YVVAQ-PISTDAGCVAQ-TMTIGVTLIQPAETIDTLIARADAAMYQGKQSGRDRVIPFA 681


>gi|302185551|ref|ZP_07262224.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 334

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 11/176 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+GL N   F   L            +LS++  D+DYFK  N
Sbjct: 156 QQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRATREQSQLSMLMIDVDYFKPYN 215

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DNFGH  GD+ +  ++  +            R GGEEFA     +S   A +LA  LR+ 
Sbjct: 216 DNFGHLEGDEALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQS 275

Query: 203 IENSQI-NISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255
           +    I +I+  P   +T+S G+A            +I  AD+ LY AK +GRN+V
Sbjct: 276 VAGMNIPHIAPVPGSSLTVSIGVATMTPQVGMQSRQLILDADKGLYQAKNNGRNQV 331


>gi|218549020|ref|YP_002382811.1| RNase II stability modulator [Escherichia fergusonii ATCC 35469]
 gi|218356561|emb|CAQ89184.1| modulator of Rnase II stability [Escherichia fergusonii ATCC 35469]
 gi|325497442|gb|EGC95301.1| RNase II stability modulator [Escherichia fergusonii ECD227]
          Length = 663

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E  ++  R+  L+  D ++GL N +A    + +      N ++ IV+ D+D FK
Sbjct: 219 SGTDITEERVAQERLRVLANTDTITGLPNRNAIHELIDNAIVQTTNAQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  ++  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHMFGDQLLQAVALAILSCLDNDQTLARHGGDEFIVLAPDTSQGALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   +    S GIA    H     ++I  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVQTGCSVGIALSPLHGHDSDSLIRSADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           S   N 
Sbjct: 396 SPEMNQ 401


>gi|193222427|emb|CAL63194.2| Conserved hypothetical protein; putative PAS, GGDEF and EAL domains
           [Herminiimonas arsenicoxydans]
          Length = 563

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 96/199 (48%), Gaps = 11/199 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GS 124
           +I   T S L   + G  +     +  R+  ++  D L+ L N +     L         
Sbjct: 100 MIAYETGSALELLLVGRDISHRQKTEERLRHMATHDELTNLPNRALLADRLSMGMAQARR 159

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
            N   S++  D+D FK++ND  GH VGD ++   + +L         + R+GG+EF A  
Sbjct: 160 TNIGFSVIALDLDGFKKVNDALGHAVGDALLRIAAGRLRETLRDVDTLARVGGDEFVAVL 219

Query: 185 LGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQ 242
            G+ ++  A + N  R++I   Q+    +  +++++ S G+A    H +    ++  AD 
Sbjct: 220 PGAIDE--AEIQNVARRMISALQLPFEINDDTLYVSASIGVAIYPIHGDSEVKLLAHADA 277

Query: 243 ALYVAKKSGRNRVVCFSDI 261
           A+Y AK++G+ R + ++++
Sbjct: 278 AMYRAKETGKARCIIYNEL 296


>gi|190573568|ref|YP_001971413.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190011490|emb|CAQ45108.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 447

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 9/166 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+GL N   F+         L  + + +++   DID+FK IND  GH  GD
Sbjct: 268 LQDLATRDFLTGLPNRRCFLEQSQRQLPQLQLHGQCVAVAMIDIDHFKHINDTHGHEAGD 327

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +  ++  +     +   + R GGEEF        + EA +   +LR+ I   +++I +
Sbjct: 328 DALRAVAGAVATHARSHDLIARFGGEEFCLLVPDMEQDEALLYFEELRQRIAALEVDIGT 387

Query: 213 GPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             ++ +T+S G+   R  ++ +  +I  AD+ LY+AK  GRNRV C
Sbjct: 388 -ATLRMTVSIGLCCLRPQRDALHRLISEADRQLYLAKAGGRNRVSC 432


>gi|114563157|ref|YP_750670.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114334450|gb|ABI71832.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 307

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 12/175 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L     ++  L+  D L+ LLN           +       + + ++  DID+FK IN
Sbjct: 135 EKLEEQAEKLKLLASTDELTQLLNRREMKYRSTLALEQATRSEQSVGLLLLDIDHFKIIN 194

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+FGH  GD+V+  L   L         V R GGEEF      +++ +  +  N L+  I
Sbjct: 195 DSFGHLEGDRVLKELGHILKNFCRQTDLVSRFGGEEFLILLPDTNKSDTLLFCNRLQDSI 254

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             SQI +       +T+S G++    K   + +  +AD+A+Y AK  GRNR   +
Sbjct: 255 --SQIKVGDDV---LTVSIGVSICDDKRQFTDLFTQADKAMYKAKALGRNRTEIY 304


>gi|313680298|ref|YP_004058037.1| diguanylate cyclase [Oceanithermus profundus DSM 14977]
 gi|313153013|gb|ADR36864.1| diguanylate cyclase [Oceanithermus profundus DSM 14977]
          Length = 346

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 64/198 (32%), Positives = 96/198 (48%), Gaps = 15/198 (7%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISY-NRISQLSRIDCLSGLLNHSAFISS- 121
           IL+ NL  + +S  +      ++  +  E   +   ++ +L   D L+G L+   F+   
Sbjct: 157 ILLSNLGYLWVSRVL------VAFGLRAEADRAQAKQMQKLVDTDALTGCLSRRRFLEET 210

Query: 122 --LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
             L       S++ FD+D FKQIND +GHP GD+V+     + +        +GRLGGEE
Sbjct: 211 EALLESGRPGSLILFDLDNFKQINDTYGHPTGDRVLMRSVKRTLHNLREEDRLGRLGGEE 270

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           FA    G   +EA  LA  LR+ +E       S      T S G+ E       S ++ R
Sbjct: 271 FAVLLPGVGLEEALRLAERLRRALEA-----PSDEGPPATASFGVVETGRLRTTSELLAR 325

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD+ALY AK +G+NRV  
Sbjct: 326 ADRALYRAKHAGKNRVAA 343


>gi|294678156|ref|YP_003578771.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Rhodobacter capsulatus SB
           1003]
 gi|294476976|gb|ADE86364.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Rhodobacter capsulatus SB
           1003]
          Length = 466

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 13/181 (7%)

Query: 91  KELFISYNRIS---QLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFK 140
           +       R++   +L+ +D L+GL N                      +++  DID FK
Sbjct: 281 RRHDRQRERVADGLRLALVDPLTGLYNRRYAMPHVARLAERSRHSGRSFAVMVLDIDRFK 340

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GH  GD+V+  ++ +L +       V R+GGEEF  A   +S + A   A  L 
Sbjct: 341 SVNDTYGHAAGDRVLIEVARRLTLNLRQVDLVARVGGEEFLIAMPETSLEAARATAERLC 400

Query: 201 KIIENSQINISSGPSIHITISA---GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +++E +   +  G ++ IT+S              +  +I +AD AL  +K  GRN+V  
Sbjct: 401 RVMEETPFELHDGHALRITVSIGLALGGGHGGTGTVEQVINQADHALMSSKAEGRNQVKI 460

Query: 258 F 258
           F
Sbjct: 461 F 461


>gi|237799012|ref|ZP_04587473.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021866|gb|EGI01923.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 308

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 8/170 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y   +Q +  D L+   N  A   SL         + + LS++  DID+FK++ND +GH 
Sbjct: 140 YRIATQSALRDSLTDTGNRIAMDQSLAREIEVSRRHKQPLSLLMLDIDHFKKVNDEYGHH 199

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  L         V R GGEEF      +    A ++   LR+ + + +  
Sbjct: 200 TGDDVLKTVAHSLKTQLRNIDRVFRYGGEEFVVILSNTDSDSAELIGERLRQAVRDLEFQ 259

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               P++++T+S G +     E   +++ RAD ALYVAK+ GRNR+   S
Sbjct: 260 ELD-PTLNMTVSLGCSTLLSTETADSLLRRADNALYVAKRQGRNRLAMAS 308


>gi|209886197|ref|YP_002290054.1| cellulose synthesis regulatory protein [Oligotropha carboxidovorans
           OM5]
 gi|209874393|gb|ACI94189.1| cellulose synthesis regulatory protein [Oligotropha carboxidovorans
           OM5]
          Length = 397

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 69/251 (27%), Positives = 115/251 (45%), Gaps = 11/251 (4%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI 64
           L      W    +        + +   +    +  A V+     ++ +   + +      
Sbjct: 131 LATAWEYWRWRAEAPLLILLLSALYALTALSFVLCAVVLLQQGEWMMHRAPSGW------ 184

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
             EN++LV+ SIT    LG +S ++ +     +++  + +  D L+GLLN  A       
Sbjct: 185 -AENINLVM-SITSIGGLGALSLALNQVRITRHHQ--REAEHDSLTGLLNRRALFDKSQR 240

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
               +++V FD+D+FK +ND  GH VGD V+   +  L           RLGGEEF    
Sbjct: 241 VAAPVAVVVFDVDHFKAVNDRHGHQVGDTVLQTFASLLAANTREGDLAARLGGEEFVIVL 300

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
            G+   +A  +A  +R+ +   +  ISS     +T+SAG+A    +  I  ++ RAD AL
Sbjct: 301 SGTMAAQAMQVAERVRESLAGQRF-ISSSGDFGVTVSAGVACENGEVDIIALLRRADFAL 359

Query: 245 YVAKKSGRNRV 255
           Y AK +GRNRV
Sbjct: 360 YDAKHTGRNRV 370


>gi|149182402|ref|ZP_01860878.1| hypothetical protein BSG1_09378 [Bacillus sp. SG-1]
 gi|148849865|gb|EDL64039.1| hypothetical protein BSG1_09378 [Bacillus sp. SG-1]
          Length = 975

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 88/187 (47%), Gaps = 13/187 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYF 139
           G  + E   +  +I+ L+  D  +GL N          FIS       ++ ++F DID F
Sbjct: 525 GRNITEQKKTEEKITYLAYFDAETGLPNRIKFRELAEEFISRAKKKKRRIGVLFLDIDRF 584

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILAND 198
           K IND  GH  GD+++  L++++        ++GR G ++F        + ++   +A  
Sbjct: 585 KLINDTLGHSAGDQILIELAERIKNALPKGAYLGRFGSDKFTILISKNVTNEKLKQVAEL 644

Query: 199 LRKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
           +    EN Q+ I  G    +I  S G+     H   ++ ++  AD AL  AK +G +++V
Sbjct: 645 I---AENIQMPIIQGNQEFYIKASIGVGVYPDHGTDLADLLKNADTALNWAKSNGGDQIV 701

Query: 257 CFSDIEN 263
            +++  N
Sbjct: 702 FYTNEMN 708


>gi|255319086|ref|ZP_05360307.1| diguanylate cyclase [Acinetobacter radioresistens SK82]
 gi|262378170|ref|ZP_06071327.1| GGDEF family protein [Acinetobacter radioresistens SH164]
 gi|255303888|gb|EET83084.1| diguanylate cyclase [Acinetobacter radioresistens SK82]
 gi|262299455|gb|EEY87367.1| GGDEF family protein [Acinetobacter radioresistens SH164]
          Length = 523

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 11/175 (6%)

Query: 88  SILKELFISYNRISQLSRI---DCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQ 141
           S+L  +    ++I +++     D L+GL N      FI  +       +++  DIDYFK+
Sbjct: 351 SLLSSVEKFTHKIDEMNFHINSDPLTGLFNRRGLEIFIEEMTRTQTHFAVLLIDIDYFKK 410

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND++GH  GD+++  ++  ++  F       R GGEEF      +  + A   A  LRK
Sbjct: 411 INDSYGHAQGDRILKQVAQHILNNFRKNDLCCRYGGEEFVVLMPQADIENAYKSAERLRK 470

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
            +EN+ +N   GP   ITIS GIA        ++ +   AD  LY AK +GRN+V
Sbjct: 471 KMENT-LNDGIGP---ITISIGIAFWPETSREVARVFEIADAKLYQAKIAGRNQV 521


>gi|218666510|ref|YP_002426145.1| sensory box-containing diguanylate cyclase, putative
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218518723|gb|ACK79309.1| sensory box-containing diguanylate cyclase, putative
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 709

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 82/189 (43%), Gaps = 11/189 (5%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132
           LL   +    + E       ++  +  D L+GL N   F+  LG        +   L++ 
Sbjct: 138 LLGVVLVFHDVTEKRRLIAELAHQATHDALTGLPNRVLFMDRLGHDRAQTLRHEHLLAVG 197

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQE 191
             D+D FKQ+ND+FGH  GD ++  ++ +L     +   + R+GG+EF        + ++
Sbjct: 198 ILDLDGFKQVNDHFGHASGDALLQEMAQRLHREMRSGDTLARMGGDEFGLLLPDVGNLEQ 257

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKS 250
                  L +++            I ++ S G+      + +   ++  AD ALY AK +
Sbjct: 258 VEDACTRLLEVLRA--PFYLGDEEIPLSSSIGLTSYPLDDSLPEDLLRHADLALYAAKAA 315

Query: 251 GRNRVVCFS 259
           GR+R   F 
Sbjct: 316 GRDRYHWFD 324


>gi|194014703|ref|ZP_03053320.1| ABC superfamily ATP binding cassette transporter, binding protein
           [Bacillus pumilus ATCC 7061]
 gi|194013729|gb|EDW23294.1| ABC superfamily ATP binding cassette transporter, binding protein
           [Bacillus pumilus ATCC 7061]
          Length = 361

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 120/252 (47%), Gaps = 24/252 (9%)

Query: 30  YFSIFFSIFIATVIFIANIFLF--YIGLTPFYGLEYILVENLSLVIISIT---------- 77
           + +IF  + IAT  F+         + +     L  ++  +L ++I+  T          
Sbjct: 103 FINIFSMMIIATASFLIAERHMNQVMKMLLSITLGNVIATSLFIMIVHETSFELHFAYWM 162

Query: 78  ISLLLGYISGSILKELFISYNRI---SQLSRIDCLSGLLNHSAFISSLGSY--------N 126
            S + G  +  +++    +Y  +      +  D L+G+LN   F   L            
Sbjct: 163 FSYVAGLFNFYVIEHQTKAYQLLNLYKFQAHYDFLTGVLNKRKFDEVLNDAFSMKFKQPI 222

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
            ++S+++ DIDYFK IND +GH  GD V+  +  +L+    +  ++GR+GGEEFA     
Sbjct: 223 HQISLIYLDIDYFKSINDQYGHHEGDMVLKEIGKRLMKNTRSSDYIGRIGGEEFAVLLPN 282

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALY 245
            + ++   +A  LR+ I +  I + +G SIHIT+S G A      P I  +   ADQ LY
Sbjct: 283 CTVEKTWQIAERLRRKIADQPIYLQNGMSIHITVSLGCAYFPGTSPNIKQLPIIADQELY 342

Query: 246 VAKKSGRNRVVC 257
            AK+SGRN+V  
Sbjct: 343 KAKQSGRNQVSF 354


>gi|71278056|ref|YP_270245.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71143796|gb|AAZ24269.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 322

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 114/240 (47%), Gaps = 18/240 (7%)

Query: 32  SIFFSIFIATVIFIANIFLF-YIGLTPFYGLEYILVENLSLV-IISIT-----ISLLLGY 84
           S+F     A  I+    +LF +    P  G    + +N + + ++S T     + LL+  
Sbjct: 75  SVFLLKNKAFTIWEQRPYLFKFDSYRPVTGSADFMYQNTTFIPLLSSTGDVSHLCLLVYD 134

Query: 85  ISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFD 135
           ++ + + +  L  +   ++ LS+ D L+ L N + + + L       G      S+V  D
Sbjct: 135 VTDNAVHKQGLKKANEELAILSQTDGLTQLFNRAHWETCLLAEHKRWGRSQHASSLVMLD 194

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK +ND +GH VGD VI  LS  +          GR GGEEFA     +S + A + 
Sbjct: 195 IDHFKNVNDTYGHVVGDVVIRHLSSLIRHHVRETDICGRYGGEEFAILLADTSLKNAYVF 254

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
           A  LRK +  + +  +    I+ TIS G+AE           +  AD ALY +K++GRN+
Sbjct: 255 AERLRKEVAKATVTYND-IDINYTISVGVAEVDESITSHEAWVECADAALYQSKETGRNK 313


>gi|329891029|ref|ZP_08269372.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328846330|gb|EGF95894.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 454

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 80/157 (50%), Gaps = 7/157 (4%)

Query: 106 IDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+  LN     S L          +  LS++  D+D+FK+IND  GHPVGD+V+  +
Sbjct: 291 RDPLTRALNRRFLSSILSREIGFANANHTPLSVLLLDVDHFKRINDTHGHPVGDEVLRQV 350

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           ++ +        FV R GGEEF    + +S  +AA +A  +R  +    I  +  P   I
Sbjct: 351 AEAVTENVRPSDFVFRYGGEEFLVVLVETSLHQAATIAERMRLALAAKPIAAAGLPPFSI 410

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T S G+A        + +I  AD ALY AK++GRNRV
Sbjct: 411 TASIGVAAHRGHPDENYLIKAADDALYRAKQNGRNRV 447


>gi|260220339|emb|CBA27777.1| hypothetical protein Csp_A03980 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 633

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 59/249 (23%), Positives = 109/249 (43%), Gaps = 21/249 (8%)

Query: 30  YFSIFFSIFIATVIFIANIFL--FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           +F +  +  +  V+ +    L  +  G+T    L+  L +++S+++I+  +   L Y   
Sbjct: 116 HFWMLLTFMLGCVVMLGLGTLNGWRTGITSGTELDR-LTDSVSILLINGFLIWFLTYDMQ 174

Query: 88  SILKELFISYNR-------ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVF 133
           + L  L     R       ++ L++ D L+ L N        +  +         ++++F
Sbjct: 175 NALVRLRAQIARFHASEKNLTYLAQHDGLTRLPNRILGNELLTEAMRVAAEEKNLVAMLF 234

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK +ND+ GH  GD  +  ++ +L         V R GG+EF     G    +A 
Sbjct: 235 VDLDNFKDVNDSLGHSAGDDFLVQVAQRLRESVRQSDIVCRQGGDEFLIGLTGLQHPDA- 293

Query: 194 ILANDLRKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
            +A   + I++  Q      G  +  + S GIA    H      ++  AD A+Y AK++G
Sbjct: 294 -VAKVSQDILQKMQAPFQLRGIEVLASCSIGIALYPQHGNSFDELMRHADLAMYHAKEAG 352

Query: 252 RNRVVCFSD 260
           RN    FS+
Sbjct: 353 RNTFRFFSE 361


>gi|145297768|ref|YP_001140609.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850540|gb|ABO88861.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 340

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 64/172 (37%), Positives = 90/172 (52%), Gaps = 5/172 (2%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           +KEL  + N   +L+  D L+ LLN  AF   I  L    +  S++  DID FK  ND +
Sbjct: 165 IKELREALNETRKLANEDALTSLLNRRAFDLEIDGLIRSKQTFSLILSDIDRFKNFNDEY 224

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH +GD+V+   S +L       +   RLGGEEFA      +   +  +A  LR+ IE  
Sbjct: 225 GHLLGDQVLRAFSKRLRETCKEGVTAYRLGGEEFALLVPMRNLALSRQMAESLRRAIEKM 284

Query: 207 QI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            I +  SG  I HIT S G+ E   +E    ++ R D+ LY AK+ GRNRV+
Sbjct: 285 SILDRKSGRRIDHITASFGVGEYNGQETGDALVERTDKLLYKAKELGRNRVM 336


>gi|27380653|ref|NP_772182.1| hypothetical protein bll5542 [Bradyrhizobium japonicum USDA 110]
 gi|27353818|dbj|BAC50807.1| bll5542 [Bradyrhizobium japonicum USDA 110]
          Length = 835

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 55/194 (28%), Positives = 87/194 (44%), Gaps = 19/194 (9%)

Query: 83  GYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDI 136
           GY+   + + E   +  RI+ ++  D L+ L N   F   L         +++ +++ D+
Sbjct: 386 GYLVAVVDITERRKAEARIAHMAHHDGLTDLPNREYFQQRLKQALDQAGGKRVGVLYIDL 445

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-----LGSSEQE 191
           D FK IND+FGHP GD+++  ++++L           RLGG+EFA           +   
Sbjct: 446 DLFKNINDSFGHPAGDRLLKEVAERLTTAVRGANLAARLGGDEFAVILAADVSPNEASAC 505

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250
           AA+L + LR   E        G  + I  S GIA           ++  AD ALY AK  
Sbjct: 506 AALLIDMLRAPYE------IDGQEMVIGASIGIALSPGDGVTSEELMRNADMALYRAKSD 559

Query: 251 GRNRVVCFSDIENN 264
           G   V  F + E +
Sbjct: 560 GGG-VHHFFEREMD 572


>gi|332992498|gb|AEF02553.1| diguanylate cyclase [Alteromonas sp. SN2]
          Length = 339

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 64/264 (24%), Positives = 118/264 (44%), Gaps = 22/264 (8%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60
           +T S    L  WL     L      ++++  +   +I+    +      L Y  +     
Sbjct: 88  LTASFTSALYSWLFIVPVL------SYLLLGTQLGTIYSVLYVLSGCGILTYRHIVHNPD 141

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH----- 115
              I + N++L + +I        +S +  ++   +  R+ +++ +D L+GL N      
Sbjct: 142 TPVIAIVNIALTLTAI------WALSYTYERKRAETVKRLQEMASLDPLTGLNNRLLLGS 195

Query: 116 --SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                  +L    + +S+V  D+D+FK++ND +GH VGD V+  +S  +  +        
Sbjct: 196 IFDMLCETLPEKQKSVSMVLVDLDHFKKVNDRYGHGVGDAVLVDVSRIINSMRRRNDCAF 255

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEP 232
           R GGEEF       +  +A  +A  LR  +E++    + G    +T+S G+A      + 
Sbjct: 256 RFGGEEFCLLVPDVTPSQAHSIAERLRHSVEHTL--SAEGFDAKMTVSIGVARWPENGDA 313

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
           +S I   AD+ LY AK+ GRN+ V
Sbjct: 314 LSQIYKVADERLYKAKEQGRNQTV 337


>gi|327191913|gb|EGE58899.1| putative two-component response regulator protein [Rhizobium etli
           CNPAF512]
          Length = 430

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 69/267 (25%), Positives = 121/267 (45%), Gaps = 33/267 (12%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI--LVENLSLVIISITIS--- 79
           H  ++ F    +I I +V     I +    L  ++ L++   L+E  S+V  ++  S   
Sbjct: 150 HLTIMLFVATSAITIFSVPLAWTIAIACYALCLYFTLQWYNPLLEEGSVVAGTLFFSCGI 209

Query: 80  -----------------LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
                             LL       + EL  +  R+ +L+R D L+G+ N    + +L
Sbjct: 210 IATVVARRTMNILAQKTFLLDCRDQRRVAELADANARLERLARTDPLTGIANRRWMMETL 269

Query: 123 GSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRL 175
            S          ++++  DID+FK +ND  GH  GD+ +  ++  +          V R 
Sbjct: 270 ESLWRHGRETGIVAMLMCDIDHFKALNDKLGHGEGDRCLVKVAGIIQSCVRADRDLVSRH 329

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKE--- 231
           GGEEF        E+EA  +A  +R+ +E + + N SS     +T+S G+A +   +   
Sbjct: 330 GGEEFLIVLPDVEEEEAVAVAKRIRESVEAAALPNPSSSVGPSVTLSVGVAFKSAADTGV 389

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCF 258
            ++ + + AD ALY AK++GRN+V  F
Sbjct: 390 TLANLQHEADVALYRAKEAGRNQVCVF 416


>gi|239904880|ref|YP_002951618.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239794743|dbj|BAH73732.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 687

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 75/174 (43%), Gaps = 11/174 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
           L  S  ++  LS  D L+G+ N   F  +              LS+V  DIDYFK  ND 
Sbjct: 359 LAESNRKLEALSATDPLTGIANRRRFDEAFAGEYARHARTGAPLSLVMLDIDYFKNFNDA 418

Query: 146 FGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD  +A ++  +            R GGEEF      +S +    +A  +R+ + 
Sbjct: 419 YGHAQGDACLAAVARAMAGCLQRPGDLAARYGGEEFICLLPDTSPRGTRTVAESIREAVA 478

Query: 205 NSQINIS-SGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              I  + S  +  +T+S G   A          +  + D  LY AK++GRNRV
Sbjct: 479 ALAIPHARSSAAAVVTVSIGALTAACPPDADPGDLFRQVDALLYKAKENGRNRV 532


>gi|228922228|ref|ZP_04085535.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228837283|gb|EEM82617.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 785

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 10/205 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           IL   +++V I I       Y+    +  +      I+ L+  D ++ + N   F   L 
Sbjct: 318 ILFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELD 377

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     +K  +++ D++ FK IND  GH +GDKV+  ++ +        + + R+G
Sbjct: 378 RSIKRAQKTQDKFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIG 437

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           G+EFA      +EQ+   L   L +I E  +  + +  S ++++S GIA         +T
Sbjct: 438 GDEFAIIVHNQTEQQLLDLCTTLFRITE--EPFVVNQHSFYLSLSIGIAVYPFGGINTTT 495

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++  AD A+Y AK+ G N V  + +
Sbjct: 496 LLQHADIAMYSAKEKGNNAVCMYDE 520


>gi|298528055|ref|ZP_07015459.1| diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511707|gb|EFI35609.1| diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 486

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 10/181 (5%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFG 147
           + Y  +   +  D L+ + N   F   L    ++       LS++  D+D+FK +ND +G
Sbjct: 304 LEYKAVKYEAEFDGLTCINNRQHFDKKLRKELKRHQRQVNSLSLIMLDLDHFKTLNDTYG 363

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  + + LV       F  R GGEEF      ++E++A +L   +R+ I  ++
Sbjct: 364 HVTGDMVLRKIGEILVDTVRETDFPARYGGEEFVILLPETTEEQAWLLGQRIRQKIGQTE 423

Query: 208 INISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             +  G    IT S G+A        P  T++ +ADQALY++K +GRN V   +D+  + 
Sbjct: 424 FEV-QGKKFSITASLGVASIKPGPLTPKDTLVEQADQALYLSKFNGRNMVCTSADVCMDQ 482

Query: 266 C 266
            
Sbjct: 483 A 483


>gi|188588974|ref|YP_001920748.1| ggdef/hd domain protein [Clostridium botulinum E3 str. Alaska E43]
 gi|188499255|gb|ACD52391.1| ggdef/hd domain protein [Clostridium botulinum E3 str. Alaska E43]
          Length = 569

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 109/239 (45%), Gaps = 19/239 (7%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY---ISGSILKELF 94
            I   I    I    I + P   +     ++L L  I I  +  LG+   I G  +K   
Sbjct: 132 LIVAGISSFIILTMDIIMLPNAEVNVYFQDDLVLAGIFILTAWPLGFYVKIEGEHIKN-- 189

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
                +  +  ID L+ L NH  F  SL         YN+ ++++F DIDYFKQ ND  G
Sbjct: 190 -----LEDMINIDGLTELYNHRYFCDSLVENVKSGEKYNKPVAMIFIDIDYFKQYNDING 244

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  +   +           R GGEEF+     ++E++A  +A +LRK IE + 
Sbjct: 245 HQKGDYVLKKIGKIIKENSRKEDIPARYGGEEFSIILPETNEEKALNIAENLRKSIETTY 304

Query: 208 IN-ISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDIENN 264
                + P+  +T+S G++   +K      +I  AD ALY AK   +NRV  ++ I + 
Sbjct: 305 FEGEENQPNGKVTVSIGVSVYPYKAKNDVELIKSADDALYRAKFFYKNRVEVYTSILDE 363


>gi|161615434|ref|YP_001589399.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161364798|gb|ABX68566.1| hypothetical protein SPAB_03205 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 370

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 104/232 (44%), Gaps = 12/232 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            F++ +  ++    + L   GL P       L   LSL +I +   LL  ++S     +L
Sbjct: 141 LFTVGMGLLLVSCLVTLQLTGL-PVAMRSSSLEVTLSLPVIML-YPLLFAWVSYQTAIKL 198

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
                R+  +S  D ++G+ N   +             ++ + +++  DID+FK IND +
Sbjct: 199 AEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFDHSRRHHREATLLIIDIDHFKSINDTW 258

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ I  L+ QL +       +GR GG+EFA    G+    A    + + + +   
Sbjct: 259 GHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEFAVIMCGTPADSAITAMSRVHERLNTL 318

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++     P + + IS G+A    +       +  AD ALY AK +GRNR   
Sbjct: 319 RLP--GAPQVMLRISVGVAPLTPQIGHYREWLKSADMALYKAKNAGRNRTEV 368


>gi|83746672|ref|ZP_00943721.1| Hypothetical Protein RRSL_03583 [Ralstonia solanacearum UW551]
 gi|83726625|gb|EAP73754.1| Hypothetical Protein RRSL_03583 [Ralstonia solanacearum UW551]
          Length = 551

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 99/191 (51%), Gaps = 9/191 (4%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLG 123
           LV+ S+        ++  + + L  + + ++  +  D L+G+L    F++          
Sbjct: 359 LVVWSLLRERQHHRVTRHLNQRLQRTNSALANEAHFDHLTGVLTRRRFLALFETVLTRAH 418

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
              E L +V  D+D+FK+IND +GH VGD  +   +     V  +   +GRLGGEEFA  
Sbjct: 419 VRGESLVLVLADLDHFKRINDTWGHAVGDLALQRFASLATGVMRSSDLIGRLGGEEFAVV 478

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              ++ ++AA +   LR I+  +  ++ SG  + +T+S G+      +  S ++ RAD A
Sbjct: 479 MSSTTLEDAAGVVERLRAIVAEADDSLPSG--LTMTVSLGMTACRSGDTASEMLRRADLA 536

Query: 244 LYVAKKSGRNR 254
           LY AK+SGRNR
Sbjct: 537 LYRAKESGRNR 547


>gi|117920397|ref|YP_869589.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117612729|gb|ABK48183.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 937

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 91/209 (43%), Gaps = 12/209 (5%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
              + Y+L+  L L  + + + L++       +     +  R+  ++  D L+ L N + 
Sbjct: 731 LQWIRYLLLGALVLSGVMVAV-LVVNRRLNLEITRRIAAEKRLQHVASHDALTQLPNRAL 789

Query: 118 FISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
               L          +   +++F D+D FKQIND +GHPVGD ++  ++  L        
Sbjct: 790 LDDRLSQALLAHRRDHSHFALLFIDLDGFKQINDQYGHPVGDALLLKVAGLLTKAIRNSD 849

Query: 171 FVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC- 228
            V R GG+EF            A  +A+++   + +S  +I  G ++ + IS G+     
Sbjct: 850 TVARFGGDEFVILLNRVQDLDAATQVADNILHSL-SSPFSI-EGVTVEVAISIGVVIYPR 907

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +    ++ +ADQ +Y AK +G      
Sbjct: 908 DGDTAIELMKKADQLMYQAKTAGGRCYRL 936


>gi|307825936|ref|ZP_07656151.1| diguanylate cyclase with PAS/PAC sensor [Methylobacter
           tundripaludum SV96]
 gi|307733055|gb|EFO03917.1| diguanylate cyclase with PAS/PAC sensor [Methylobacter
           tundripaludum SV96]
          Length = 744

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 94/206 (45%), Gaps = 12/206 (5%)

Query: 64  ILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAF---- 118
           +  E LS+  I      +  Y+   S +  L      +SQ++  D L+G+ N        
Sbjct: 537 VFAELLSIAAICDDDGRVRRYVGVFSDISYLKAHEAELSQVAYYDALTGIPNRRLLADRM 596

Query: 119 ---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
              I+        L + + D+D FKQ+ND  GH  GD+++  +S +L         + RL
Sbjct: 597 DQAIARAQRSGRMLFVCYLDLDGFKQVNDRCGHEAGDQLLVEVSHRLQEALRAGDTLARL 656

Query: 176 GGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPI 233
           GG+EF       + E+E   + + + +II      +     + ++ S G++      E  
Sbjct: 657 GGDEFVVLFNDLAGERECCQILDRILEIIAL--PIVIGSHEVAVSASIGVSFHTSANEDG 714

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
            T++ +ADQA+YV K++G++R   + 
Sbjct: 715 DTLLRQADQAMYVVKQTGKSRYHLYD 740


>gi|289768928|ref|ZP_06528306.1| integral membrane phosphodiesterase [Streptomyces lividans TK24]
 gi|289699127|gb|EFD66556.1| integral membrane phosphodiesterase [Streptomyces lividans TK24]
          Length = 666

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 80/197 (40%), Gaps = 17/197 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN------------EKLSIV 132
            +   + E      ++   +  D L+ L N + F   +                   +++
Sbjct: 150 FNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTRRVQQALSGRRASDRGAALRGTAVL 209

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F D+D FK +ND  GH  GD+++   + +L           RLGG+EFAA  +G   ++ 
Sbjct: 210 FIDLDGFKGVNDTIGHQAGDELLVQAARRLHEAVRKGDTASRLGGDEFAALIVGDGARDR 269

Query: 193 AILANDLRKIIENSQINIS-----SGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
           A     +R++ +  ++ +S      G  + +  S G+A          ++  AD A+Y A
Sbjct: 270 AAREGHIRELADRLRLTLSQPYLIDGNEVRVNASIGVAFAEPGLGAGELLRNADLAMYRA 329

Query: 248 KKSGRNRVVCFSDIENN 264
           K  G+ RV  +      
Sbjct: 330 KAGGKGRVELYRPQMQQ 346


>gi|260462930|ref|ZP_05811134.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum
           WSM2075]
 gi|259031324|gb|EEW32596.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum
           WSM2075]
          Length = 737

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 65/217 (29%), Positives = 101/217 (46%), Gaps = 14/217 (6%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
            + L  ILV    LV+  + ++L    +    LK L  S +RI QL+  D L+ L N   
Sbjct: 267 LFQLVPILVVLCGLVLGGVIVAL--RALRRRTLK-LIESEDRIFQLAHNDLLTALPNRGQ 323

Query: 118 FISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           F   L        S  E+L++++ D+D FKQ+ND FGHP GD+++   +D+L  +     
Sbjct: 324 FNDRLADALSRLPSTGEQLAVLYLDLDRFKQVNDTFGHPAGDELLREFADRLRRLTTEAD 383

Query: 171 FVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC- 228
            V RLGG+EF       + E E   L   L +     +    +G  + + +S G A    
Sbjct: 384 TVARLGGDEFIIIKRSVAGEDEVRTLCEHLLE--SARRPFQVAGAQVFVGVSVGAAFAPR 441

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                  ++ +AD ALY AK  GR+    F+   + T
Sbjct: 442 DGLEWVELVRKADVALYHAKARGRSSYAFFATEMDQT 478


>gi|206578138|ref|YP_002239148.1| putative membrane-bound diguanylate cyclase [Klebsiella pneumoniae
           342]
 gi|288936052|ref|YP_003440111.1| diguanylate cyclase [Klebsiella variicola At-22]
 gi|206567196|gb|ACI08972.1| putative membrane-bound diguanylate cyclase [Klebsiella pneumoniae
           342]
 gi|288890761|gb|ADC59079.1| diguanylate cyclase [Klebsiella variicola At-22]
          Length = 594

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 11/177 (6%)

Query: 93  LFISYNRIS----QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           L ++  R+     + +  D L+GL N      +L S        +  LS +  DID+FK 
Sbjct: 412 LALANQRLRSALLEKALFDSLTGLRNRHHLDEALHSQMALAVHTHTPLSCLMIDIDHFKA 471

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH  GD VI  ++  +           R GGEEF     G  E  A   A+++  
Sbjct: 472 INDRYGHEAGDLVIKSVATIVQRAVRDIGMAFRYGGEEFLVLLPGIDEAGAHQCASEIYT 531

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + N  +         + +S GIA         +++  AD ALY AK+ GR+R+V F
Sbjct: 532 QVHNMTLRDGLTEIGQVDVSIGIASYPQHTQSDSLLRAADAALYRAKELGRSRIVSF 588


>gi|113970535|ref|YP_734328.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113885219|gb|ABI39271.1| diguanylate cyclase [Shewanella sp. MR-4]
          Length = 341

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 6/177 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQ 141
           + + +  L     +  +    D L+G LN  AF +     L    E   ++F DID+FK 
Sbjct: 161 AQTEIDALKQKLEKTEKDVLYDALTGCLNRRAFDADIAGMLAQAPEGTCLIFVDIDHFKA 220

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            NDN+GH +GD+V+  ++ +L         + R GGEEFA     S  + A  LA  +R+
Sbjct: 221 FNDNYGHQLGDQVLKAVAKRLQEACRDGCKLYRFGGEEFAIVVPKSQLRIARQLAEAMRR 280

Query: 202 IIENSQI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +E   + +      I HIT S G+A+   K+ +  +I + D+ LY AK+ GRNRV+
Sbjct: 281 GLEKLSLKDRRKDQRIDHITASFGVAQWQEKQSVMQLIEKTDKLLYEAKRLGRNRVM 337


>gi|291618993|ref|YP_003521735.1| PleD [Pantoea ananatis LMG 20103]
 gi|291154023|gb|ADD78607.1| PleD [Pantoea ananatis LMG 20103]
          Length = 535

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 62/236 (26%), Positives = 101/236 (42%), Gaps = 14/236 (5%)

Query: 32  SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK 91
           + +F + +  +      FL      P   L  ++ +  S     +  S+   Y     L+
Sbjct: 292 AFWFILGVIVLTATCMAFLATRISYPLEKLAGMVRDGGSDASPELLSSVNTWYNEADRLR 351

Query: 92  ELFISYNR--------ISQLSRIDCLSGLLNHSAF-ISSLGSYNEKL-SIVFFDIDYFKQ 141
           E    + R        ++  +  D L+GL N   F I +     E + S +  DID+FK+
Sbjct: 352 EAVQQHRRAVAGHVADLNDKAMTDPLTGLNNRRGFYIQAAQHSEEPVQSAIAIDIDHFKK 411

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH  GD+V+  L+  L     T   + R GG             +AA +A  +R+
Sbjct: 412 INDRYGHDAGDEVLVSLAGLLRKRCRTLDVISRFGGRSLFCCFPVRHLNDAAAMAERIRE 471

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +  +     S     +T+S G+A     E    ++ RAD+ALY AK  GRNRV+ 
Sbjct: 472 AVSKTSFPFISA----MTVSLGVATLSETEDKDALLRRADEALYAAKGDGRNRVMI 523


>gi|222111775|ref|YP_002554039.1| response regulator receiver modulated diguanylate cyclase
           [Acidovorax ebreus TPSY]
 gi|221731219|gb|ACM34039.1| response regulator receiver modulated diguanylate cyclase
           [Acidovorax ebreus TPSY]
          Length = 341

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 12/188 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           + +EL ++   ++++  +D L+GL+N   F   L             L+++  D+D+FK+
Sbjct: 149 LTEELHVANQHLNEMVEMDPLTGLVNRRGFDRILHSEILAARRDGVPLTLMLCDLDHFKR 208

Query: 142 INDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND  GH  GD  +  +   L            R GGEEFA     +    A   A  L 
Sbjct: 209 YNDTLGHVQGDACLKEVGRVLHDVCMRPRDVASRYGGEEFALILPNTPRSGAMTFARALG 268

Query: 201 KIIENSQINISSGPSI-HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           K++++  I     P+   +T+S GI            T++ RAD+ALY AK  GR+R   
Sbjct: 269 KLLKSRAIAHPGSPNGETLTLSGGITTCVPDDGTSAETMLMRADEALYAAKAQGRDRFFS 328

Query: 258 FSDIENNT 265
           F +++ +T
Sbjct: 329 F-EMQMDT 335


>gi|170690121|ref|ZP_02881288.1| diguanylate cyclase [Burkholderia graminis C4D1M]
 gi|170144556|gb|EDT12717.1| diguanylate cyclase [Burkholderia graminis C4D1M]
          Length = 392

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 62/221 (28%), Positives = 106/221 (47%), Gaps = 9/221 (4%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101
            +  A   L    L   YG + +L+ +   +   +  S++L      +++E   ++ R+ 
Sbjct: 161 ALTYAMRALALPWLVGRYGNDLLLIASAITMYEGVLYSVVLPMTLLKLIRE--ETHGRLL 218

Query: 102 QLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           Q S+ D L+ L N   F             N  LS++  D+D+FK++ND +GH  GD+V+
Sbjct: 219 QESQTDFLTRLGNRRWFFEEGERVLGEGSKNRPLSLLALDLDHFKKLNDRYGHHAGDEVL 278

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              ++    V G    + R+GGEEFAA   G  E  A  +   + +    +  +  +G  
Sbjct: 279 RSFAEVARRVVGHEAVLARIGGEEFAALLPGHDEARAKAVGEAIVECFAQTVSHRVNGAE 338

Query: 216 IHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
           +  T+S G+A   H  +P++ ++  AD ALY AK  G NRV
Sbjct: 339 VRATVSIGLAHSTHAGQPLAELLSAADGALYRAKSLGGNRV 379


>gi|187920304|ref|YP_001889335.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Burkholderia phytofirmans PsJN]
 gi|187718742|gb|ACD19965.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phytofirmans PsJN]
          Length = 1059

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 12/188 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
            + +   S  RI  L+  D L+ L N + F+  L +        + +++++F D+D FK 
Sbjct: 615 DITDRKKSEARIQFLAEHDLLTELPNRALFMKRLRAVLDHARVADHRVAVLFIDLDRFKH 674

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS--EQEAAILANDL 199
           +ND+ GH +GD ++  +S +LV        V RL G+EF     G S   +    + + L
Sbjct: 675 VNDSLGHHIGDSLLRSVSRRLVRAVRADDTVSRLSGDEFTIILNGVSGAAEVGRTIEDRL 734

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             ++   Q +   G ++ ++ S G+A      E I T++  AD A+Y AK +GRN V  F
Sbjct: 735 LPLMR--QPHELDGMALPVSCSVGVALFPDDGEDIETLMQNADAAMYQAKGAGRNLVKFF 792

Query: 259 SDIENNTC 266
           +       
Sbjct: 793 TPDMAERA 800


>gi|86751634|ref|YP_488130.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
 gi|86574662|gb|ABD09219.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
          Length = 503

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 93/204 (45%), Gaps = 18/204 (8%)

Query: 67  ENLSLVIISITISLLLGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFI---- 119
           E + +  I + +++++   +   ++E      +  R+ +L+  D L+GL N   F     
Sbjct: 294 EAIRIGAILLGLAIIVAGFTVFFIREIDRRAAAERRLEELATTDALTGLTNRRKFDVTID 353

Query: 120 ---SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRL 175
                       ++++  D D+FK  ND++GH  GD+V+  ++  +   V        R 
Sbjct: 354 REWRRALRSQTPIALMIIDADHFKAFNDSYGHQAGDQVLVGIALCIGDSVQRAGDCAARF 413

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPI 233
           GGEEFA    G +   A  +A  +R+ +E     + S     +T+S G+A       +  
Sbjct: 414 GGEEFAVLLPGMNATAALEMAETIRQKVE-----LWSDGQAGVTVSVGVASMMPGPAQHW 468

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
           S +   AD+ALY AK  GRNR V 
Sbjct: 469 SVLFEAADKALYAAKDLGRNRSVV 492


>gi|295678208|ref|YP_003606732.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia sp. CCGE1002]
 gi|295438051|gb|ADG17221.1| response regulator receiver modulated diguanylate cyclase
           [Burkholderia sp. CCGE1002]
          Length = 371

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 10/177 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+GL N       L     +       L ++  D+D FK  N
Sbjct: 193 QQLLATNLELQRLTHSDGLTGLSNRRYLDQHLADEWRRGTRDNTGLGLLMIDVDNFKAYN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+V+  ++  +      +P    R GGEEFA    G+S     +LA  +R  
Sbjct: 253 DTYGHVAGDEVLKSVAHTIEACLRHSPDLAARFGGEEFAVVVPGTSAGGLRLLAEKIRIA 312

Query: 203 IENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +E+  I  +      +TIS G A       EP+ T+I  A   LY AK  G+N V  
Sbjct: 313 VEDLAITHAGSAEGVVTISIGAALMVPSAAEPVPTLIEAASVGLYRAKHDGKNHVAV 369


>gi|205354289|ref|YP_002228090.1| hypothetical protein SG3279 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858636|ref|YP_002245287.1| hypothetical protein SEN3222 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|205274070|emb|CAR39076.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206710439|emb|CAR34797.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326629412|gb|EGE35755.1| Putative membrane protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 699

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 64/273 (23%), Positives = 115/273 (42%), Gaps = 21/273 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIA--------NIFLFYIGLTPFYGL 61
           ++WL      E           ++   I IA + +          N  + + G+   +  
Sbjct: 156 ALWLTFRLRHEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLA 215

Query: 62  EYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
             + V  L+++ I++ +SL    +      +   L  +   ++QL+  D L+ L N    
Sbjct: 216 VLVSVVALTILGITLLVSLFDARLQARTALLASSLAQANQELAQLALHDTLTRLPNRVLL 275

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L          N   +++F D+D FK +ND +GH +GDK++  ++ +L         
Sbjct: 276 EDRLEQAISKANRENTSFALLFMDLDGFKTVNDAYGHDIGDKLLVAVTHRLNQPLSGQFT 335

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF   A  S+  EAA LA+ L   I+           + +T+S GIA      
Sbjct: 336 LARIGGDEFVLLAEVSAPDEAASLASALVHSIDA--PFTIDPYELVVTLSVGIALYPLDG 393

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +    +++ AD A+Y  K +GRN    F    N
Sbjct: 394 KNERELMFNADAAMYHTKHTGRNGYHFFQPSMN 426


>gi|167589119|ref|ZP_02381507.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia ubonensis Bu]
          Length = 749

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 83/182 (45%), Gaps = 13/182 (7%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL---------GSYNEKLSIVFFDIDYFKQIND 144
             +  ++  L+  D L+GL N       +          +   +++I+F D+D FK++ND
Sbjct: 313 REAQQKLRYLATRDALTGLYNRRWLADRMRDLFGAHDGAAEAARIAILFIDLDGFKKVND 372

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKII 203
             GH  GD ++  ++ +L    G    + R+GG+EF           + A LA  +   I
Sbjct: 373 TSGHDAGDALLRSVASRLAGCVGERHALTRVGGDEFVILVDDYDAPDDLAALARQVIDAI 432

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
                ++++    ++ +S GI+      +  +T++  AD A+Y AK+ GRN    F+   
Sbjct: 433 AR-PFDVANN-EYYLGVSIGISLAPRDGDDAATLMRNADSAMYDAKQRGRNTFTFFTAQL 490

Query: 263 NN 264
           N 
Sbjct: 491 NQ 492


>gi|254563359|ref|YP_003070454.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens
           DM4]
 gi|254270637|emb|CAX26641.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL)
           precursor with PAS sensor [Methylobacterium extorquens
           DM4]
          Length = 567

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 23/182 (12%)

Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+R + L+GL N       L             L+++  D+D FK +ND  GHPVGD ++
Sbjct: 123 LARQEPLTGLCNRVGLHDRLDAALIEAARTGAPLAVLMLDLDRFKTVNDTLGHPVGDALL 182

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-------------SSEQEAAILANDLRKI 202
             ++++L     +   V RLGG+EFA   +                   A  LA  L  +
Sbjct: 183 RKVAERLRRATRSGDLVARLGGDEFAILQVDPQVGPQLGTHTGVEQPHAAEALARRLVDL 242

Query: 203 IENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +  +   +  G  +++ +S G+A      +    ++  AD ALY AK +GR     F   
Sbjct: 243 VGRT--YVVDGHMLNVGVSVGVAIAPADGQNADDLLKHADLALYRAKAAGRGTYRFFEPA 300

Query: 262 EN 263
            N
Sbjct: 301 MN 302


>gi|198244652|ref|YP_002217358.1| ggdef domain/eal domain-containing protein [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|197939168|gb|ACH76501.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
          Length = 699

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 64/273 (23%), Positives = 115/273 (42%), Gaps = 21/273 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIA--------NIFLFYIGLTPFYGL 61
           ++WL      E           ++   I IA + +          N  + + G+   +  
Sbjct: 156 ALWLTFRLRHEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLA 215

Query: 62  EYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
             + V  L+++ I++ +SL    +      +   L  +   ++QL+  D L+ L N    
Sbjct: 216 VLVSVVALTILGITLLVSLFDARLQARTALLASSLAQANQELAQLALHDTLTRLPNRVLL 275

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L          N   +++F D+D FK +ND +GH +GDK++  ++ +L         
Sbjct: 276 EDRLEQAISKANRENTSFALLFMDLDGFKTVNDAYGHDIGDKLLVAVTHRLNQPLSGQFT 335

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF   A  S+  EAA LA+ L   I+           + +T+S GIA      
Sbjct: 336 LARIGGDEFVLLAEVSAPDEAASLASALVHSIDA--PFTIDPYELVVTLSVGIALYPLDG 393

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +    +++ AD A+Y  K +GRN    F    N
Sbjct: 394 KNERELMFNADAAMYHTKHTGRNGYHFFQPSMN 426


>gi|108758642|ref|YP_631920.1| response regulator [Myxococcus xanthus DK 1622]
 gi|108462522|gb|ABF87707.1| response regulator [Myxococcus xanthus DK 1622]
          Length = 318

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 61/190 (32%), Positives = 90/190 (47%), Gaps = 14/190 (7%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVF 133
           LL  I  ++ +       R+  L++ D L+GL N  A              Y   LS+V 
Sbjct: 119 LLARIDRALRQ--SEQQRRLQILAQTDGLTGLANFRALSIRMEEEFRRAQRYQYPLSVVI 176

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D+ K IND  GH VG++ I  L+ QL        F  R GG+EF A     +  EAA
Sbjct: 177 IDLDHLKAINDGMGHDVGNRAILALATQLKHELRESDFAARFGGDEFVALLPHQTALEAA 236

Query: 194 ILANDLRKIIENSQINISSGP--SIHITISAGIAERC---HKEPISTIIYRADQALYVAK 248
           + A  +R  +    +  S G      +++S GIA+      +E   +++  AD ALY AK
Sbjct: 237 VFAERIRTGLRAVGVQKSDGRPAPFGLSVSVGIADHTFEGPREDTESLMKAADAALYEAK 296

Query: 249 KSGRNRVVCF 258
           + GR+RVV F
Sbjct: 297 REGRDRVVVF 306


>gi|159185090|ref|NP_355140.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
 gi|159140363|gb|AAK87925.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
          Length = 379

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 103/221 (46%), Gaps = 16/221 (7%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
            I+  +  + +F  Y  +       +I++ N +   IS+ + +L+             S 
Sbjct: 168 LISLAVMKSVLFPGYASINLVTAFFFIIMLNFA---ISLFVMMLVA----------ERSE 214

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI-VFFDIDYFKQINDNFGHPVGDKVIA 156
            ++  L+  D L+G+ N   F  ++ +  +     +  DID+FK IND FGH VGD V+ 
Sbjct: 215 RKLLVLANTDPLTGVKNRRFFFQTMPAAPDPADAAMLLDIDHFKSINDRFGHAVGDSVLQ 274

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++ ++         + R GGEEF     G+   +A ++   +R  +  ++++   G  +
Sbjct: 275 EVARRISGSIRGGDVLARYGGEEFIIFLPGAGVDKACMIGERIRDAVAINEVDC-GGLRV 333

Query: 217 HITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            +TIS G+A        +  +  +AD+ALY AK  GRN V 
Sbjct: 334 GVTISIGVATTGDMRCDLQMLAEKADRALYRAKTEGRNCVR 374


>gi|313683572|ref|YP_004061310.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313156432|gb|ADR35110.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 445

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 11/171 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L      ++QL+  D L+ + N   F       +S +      L+++  D+DYFK++ND 
Sbjct: 273 LQQKNRHLTQLATKDSLTEIHNRHMFAELFSQELSIIKRQGGNLALMMIDLDYFKRVNDT 332

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH +GD V+      +           R GGEEF      +  +EA  +   +R +IE 
Sbjct: 333 YGHNIGDYVLKRFVSLVASSVREADLFARWGGEEFVLLLRNTGCEEAYCVGEKIRSMIEI 392

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                       IT S GI E   ++ + + I RAD ALY AK  GRNR +
Sbjct: 393 QPFEDVG----RITCSIGITEVRSEDTLISAIERADNALYSAKDMGRNRTM 439


>gi|170726564|ref|YP_001760590.1| PAS/PAC and GAF sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella woodyi ATCC 51908]
 gi|169811911|gb|ACA86495.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella woodyi ATCC 51908]
          Length = 742

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 9/187 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQ 141
           S + E   +   I   +  D L+ L N +    ++ +  E          +  D+D FKQ
Sbjct: 296 SDISERKKASEIIDFQANYDSLTHLANRNHLFKAMNAEIESDRLNPGFGFMLMDLDNFKQ 355

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLR 200
           +ND  GH  GD+++  +  ++         + RLGG+EFA       ++ E  +LAN++ 
Sbjct: 356 VNDTLGHDKGDQLLQAVCKRIQACIKESALLARLGGDEFALLLPDMVKECELQLLANEIN 415

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +    I +     +  +IS GIA        +  ++  ADQA+Y++K  GRN    F+
Sbjct: 416 EAVSVPYI-LGGDKQVLTSISIGIARFPEDAMSLEQVLNCADQAMYISKDEGRNCFHFFT 474

Query: 260 DIENNTC 266
           +      
Sbjct: 475 EQMQQNA 481


>gi|307609682|emb|CBW99190.1| hypothetical protein LPW_09731 [Legionella pneumophila 130b]
          Length = 771

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 87/185 (47%), Gaps = 11/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
            + +     +++ Q +  D L+ L N    +  +     +       L+ +F D+D FK 
Sbjct: 325 DVTQRRDMEDQLLQQATYDSLTNLPNRVLLMDRVEQAILQARKNKAILAFLFLDLDRFKL 384

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLR 200
            ND  GH +GDK++  ++++L++V      V RLGG+EF           EA  +A ++ 
Sbjct: 385 TNDTLGHSMGDKLLQAIANRLLIVTEDFDTVARLGGDEFVILLTDIDNMLEAETIAQNIL 444

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           KIIE   I I    S+ IT S GI+      +   +++  AD ++Y AK +GRN    + 
Sbjct: 445 KIIEK-PIQI-DQHSLKITGSLGISFYPRDGDDYESLMKSADLSMYHAKDTGRNNYRVYE 502

Query: 260 DIENN 264
              N 
Sbjct: 503 PEMNR 507


>gi|220935752|ref|YP_002514651.1| hypothetical protein Tgr7_2589 [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997062|gb|ACL73664.1| conserved hypothetical protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 759

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 80/181 (44%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           + +  +  + +R+  L+  D L+ L N   F + L               ++F D+D FK
Sbjct: 299 TDISSIKETQSRLDFLAHHDPLTELPNRLLFTARLEHAIDWAVRNQAHFGLLFIDLDRFK 358

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
            IND+ GH +GD+++  ++ +L  +      + RLGG+EF     G     EA +LA  L
Sbjct: 359 TINDSLGHQLGDRLLVQVARRLRGLVRKSDTIARLGGDEFVVLVEGIHNAGEAELLAEKL 418

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +   Q        +HI  S GI       E   T++  AD A+Y  K  GR+    F
Sbjct: 419 VHAMR--QPFFLEETELHIGCSIGITLYPEDGEDPVTLLKNADAAMYRVKDFGRDGFCKF 476

Query: 259 S 259
           S
Sbjct: 477 S 477


>gi|126640809|ref|YP_001083793.1| diguanylate cyclase [Acinetobacter baumannii ATCC 17978]
 gi|126386693|gb|ABO11191.1| diguanylate cyclase [Acinetobacter baumannii ATCC 17978]
          Length = 323

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 112/248 (45%), Gaps = 17/248 (6%)

Query: 22  FSPHTFMIYFSIFFSIFIATVI--FIANIFLFYI--GLTPFYGLEYIL-VENLSLVIISI 76
             P   +I+ +I +   I  +I  F +   ++++       Y  +Y+    ++ + +I +
Sbjct: 75  LYPIAALIWCAIRYKPIIVALITSFTSAYIIYHVSGHYLLLYPQDYLGNTISIRIGLIMM 134

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------- 129
           T++ L      ++  EL     ++      D L+  L    F+ S+    EK+       
Sbjct: 135 TVAPLTVSSISALHSELI---QKLQHAIAHDELTSSLTRRQFLQSVRLLQEKVQKENKTS 191

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +    D+D+FK++ND++GH +GD+ +      +  +      +GR GGEEFA     ++ 
Sbjct: 192 AFFMLDVDHFKKVNDSYGHLIGDRALQTCVTTIQNILHPHDLLGRFGGEEFAIFIPDTTR 251

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVA 247
           + A  LA  +R  I    I +     I + +S GI+         I ++   AD ALY A
Sbjct: 252 EAAFELAERIRIQISQQPIYVYGKLPIFVQVSIGISLYSPSYHRSIESLFKEADDALYQA 311

Query: 248 KKSGRNRV 255
           K+ GRNRV
Sbjct: 312 KRQGRNRV 319


>gi|329297647|ref|ZP_08254983.1| RNase II stability modulator [Plautia stali symbiont]
          Length = 269

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 53/193 (27%), Positives = 92/193 (47%), Gaps = 20/193 (10%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  ++  D ++GL N +A    +      +   +  +V+ D+D FK
Sbjct: 69  SGTDITEERRAQERLRVMANTDTVTGLPNRNAIHQQISLALELANGSQTGVVYLDLDNFK 128

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE------AAI 194
           ++ND +GH  GD+++  +S  ++   G    + RLGG+EF   A  +S+        A+ 
Sbjct: 129 KVNDAYGHMFGDQLLQAVSLAILSCLGKNQTLARLGGDEFVVLAEHTSQAALEAMASASR 188

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           +   LR+      I + SG       S GIA    H E   ++I  AD A+Y AK++GR 
Sbjct: 189 ILERLRQPFRIGLIEVYSG------CSIGIALAPLHGEDRESLIRNADTAMYHAKENGRG 242

Query: 254 RVVC--FSDIENN 264
           +     F+   N 
Sbjct: 243 KFCFCVFASEMNQ 255


>gi|212633277|ref|YP_002309802.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212554761|gb|ACJ27215.1| GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 873

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 13/181 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--------KLSIVFFDIDYFKQ 141
           + +      ++   ++ D L+GL N + F+  L    +        K +++F D+D FK 
Sbjct: 434 INQRKRIERQLVHDAKHDNLTGLPNRAMFMERLSQSIKHVRRHTLDKFAVLFIDMDRFKL 493

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND  GH  GD+ +   + +L +       + RLGG+EF        S+++A  +A  + 
Sbjct: 494 LNDTLGHLEGDRFLIETAKRLKLCIRNNDMLARLGGDEFVILLDSVGSQKDAEDVAERI- 552

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCF 258
            ++E S+    +   ++ + S G+A       +   +I+  AD A+Y AK  G+   V F
Sbjct: 553 -LLELSRPYTLANQQLNSSASIGLAMSGQNNSDTSESILRNADSAMYQAKSKGKGCYVLF 611

Query: 259 S 259
           +
Sbjct: 612 A 612


>gi|254436984|ref|ZP_05050478.1| cyclic diguanylate phosphodiesterase domain protein [Octadecabacter
           antarcticus 307]
 gi|198252430|gb|EDY76744.1| cyclic diguanylate phosphodiesterase domain protein [Octadecabacter
           antarcticus 307]
          Length = 686

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 56/190 (29%), Positives = 87/190 (45%), Gaps = 9/190 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDY 138
            ++   + EL  + +    L++ D L+ L N S   S L     +      +++FFD+D 
Sbjct: 236 LLTAIDVSELKEARDTARHLAQRDQLTNLHNRSYLQSYLEGREGRGDTAGCAVIFFDVDR 295

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-AN 197
           FK IND +GH  GD V+  ++ +   V      V RLGG+EF     G S +    L   
Sbjct: 296 FKLINDRYGHDAGDTVLKQIATRARAVLSPQDLVARLGGDEFVIVIDGDSSKATLELQVE 355

Query: 198 DLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             R  I  + ++      I  TIS GIA      +  ST++ +AD ALY +K+ GRN   
Sbjct: 356 KRRHAISKTILH--DKTRIDATISVGIAGHSSDTDSFSTVMRQADIALYASKQGGRNCTT 413

Query: 257 CFSDIENNTC 266
            F+    +  
Sbjct: 414 FFTTEMGDAA 423


>gi|192362321|ref|YP_001981676.1| GGDEF domain-containing protein [Cellvibrio japonicus Ueda107]
 gi|190688486|gb|ACE86164.1| GGDEF domain protein [Cellvibrio japonicus Ueda107]
          Length = 325

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 75/242 (30%), Positives = 117/242 (48%), Gaps = 18/242 (7%)

Query: 25  HTFMIYFSIFFSIFIATVI--FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL 82
             F ++ +IF ++F+   +   IAN+      L P       +V+ +++ I S+  S  L
Sbjct: 91  FVFWVFPAIFANVFLLRALNALIANLLAIS-ALVPLALRLPNMVDAMAM-IASLLFSTSL 148

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFD 135
            Y+   +  E   +   + + +  D L+ L N  A   +L              +++ FD
Sbjct: 149 AYVFA-LQTERQRAL--LEKSASQDPLTELANRRALNQTLKQCLDDFQRNQTPATLIIFD 205

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +DYFKQIND FGH +GD+++  L+  +     T     R GGEEF   A  +  +EA + 
Sbjct: 206 LDYFKQINDKFGHSIGDEILQNLAQLITRRIRTTDRAFRFGGEEFIVLARNTQLEEARLF 265

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A  LR  I + ++N   G    IT S G AE    E +     RAD+A+Y AK+ GRNRV
Sbjct: 266 AEQLRVNI-SLELNAPEGE---ITASFGCAELKPNETLDGWFNRADKAVYQAKQLGRNRV 321

Query: 256 VC 257
           VC
Sbjct: 322 VC 323


>gi|304310557|ref|YP_003810155.1| PAS sensor protein [gamma proteobacterium HdN1]
 gi|301796290|emb|CBL44498.1| PAS sensor protein [gamma proteobacterium HdN1]
          Length = 986

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 89/184 (48%), Gaps = 9/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKL--SIVFFDIDYFKQ 141
            +     S  ++  L+  D L+GL+N   F   L       + EK+  ++++ D+D FK 
Sbjct: 547 DISSRKKSEEQLQYLAHHDPLTGLVNRREFEVRLQRMLFTAHREKVEHALLYMDLDQFKL 606

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND+ GH  GD+++  ++ QL     +   + RLGG+EF         Q A  +A+ L+ 
Sbjct: 607 VNDSCGHVAGDELLRQITWQLQQQMRSGDTLARLGGDEFGVLLERCDRQNAFKVASKLKS 666

Query: 202 IIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++++ +  +       + +S G ++       ++ ++  AD A Y AK  GRNR+  +  
Sbjct: 667 VVQDFRF-VWDDKFFVLGVSIGLVSINSGSRSVADLLSLADSACYAAKDGGRNRIHEYQP 725

Query: 261 IENN 264
            + N
Sbjct: 726 GDKN 729


>gi|293395763|ref|ZP_06640045.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291421700|gb|EFE94947.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 378

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 61/267 (22%), Positives = 114/267 (42%), Gaps = 28/267 (10%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYI-------GLTPFY------GLEYIL 65
           L SF    F+  + + FS  +  ++ +  +   Y         L P +       ++   
Sbjct: 112 LWSFCCFYFVTVWRLPFSYPLTIILMLTALGALYFYPKGLLLFLLPIWLTCLMASVKLNA 171

Query: 66  VENLSLVIISITISLLL---GYISGSILKELFISYN-------RISQLSRIDCLSGLLNH 115
             N+  VII + ++ +L    YI      E +  Y        R+  ++  D L+   N 
Sbjct: 172 GLNMRFVIIWLLLAFILLYGRYILLHWFNENWQRYQDNRLLISRLETMANQDALTETANR 231

Query: 116 SAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MF 171
            A    L          +++  D+D+FK+ ND++GHP GD+ +  ++  L     +P   
Sbjct: 232 RAMEHHLAVAAERQRPFALIMIDVDFFKRYNDHYGHPAGDRCLRDIAAILKSSVRSPEDV 291

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHK 230
           V R GGEEF      +S   A ++A  +++ I    +  ++      +++S G+A     
Sbjct: 292 VARYGGEEFLLLLFDASLAGATVVAERIQQNIRRQGVPHAASEVGEVVSVSMGLAASSGN 351

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVC 257
           +  + ++  AD ALY AK+ GR+R   
Sbjct: 352 KSDAQLLAEADAALYRAKQGGRDRWQV 378


>gi|261213004|ref|ZP_05927288.1| GGDEF family protein [Vibrio sp. RC341]
 gi|260838069|gb|EEX64746.1| GGDEF family protein [Vibrio sp. RC341]
          Length = 391

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 67/270 (24%), Positives = 108/270 (40%), Gaps = 27/270 (10%)

Query: 13  LCHEKNLESFSPHTFMI---YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL 69
           L H   L        MI      + +S  I   + ++ +FL Y       G  Y L+   
Sbjct: 101 LWHLLWLYPLITTLVMINPFRMGVVYSAAICLAMTVSVLFLHYKTGENHIGHSYFLISLY 160

Query: 70  SLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFI----SSLGS 124
           +L II  T S         I       Y   I +L+ +D L+GL N  +F       L  
Sbjct: 161 ALTIICNTASFFFSRAINYI----HALYQEGIEELAYLDPLTGLANRWSFENWATEKLKE 216

Query: 125 YNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF--------VG 173
            N      ++VF DID FK+IND++GH VGD+V+   + +L                 + 
Sbjct: 217 ENGTNSITALVFLDIDNFKRINDSYGHDVGDEVLKHFAHRLRNNVRNKDRTTNQHDYSIA 276

Query: 174 RLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE- 231
           R  G+EF     G  S ++   +   +  +  +           H+T+S G+A       
Sbjct: 277 RFAGDEFVLLLYGVRSLRDLDSILERICYLFVDRYPETEMLN--HLTVSIGVAIYPKDAI 334

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            +S +   AD+A+Y AK  G+N+   + + 
Sbjct: 335 TLSELTRCADKAMYAAKHGGKNQYRYYHEA 364


>gi|17230366|ref|NP_486914.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17131968|dbj|BAB74573.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 330

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 11/181 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQ 141
           + ++L  +   + +L  ID L+ + N   F        +        LS++  D+D+FK 
Sbjct: 132 LQQKLEAANRELQRLVTIDELTQVANRRRFEEYCAQEWQRMARDQLPLSLILCDVDFFKA 191

Query: 142 INDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND +GH  GD+ +  ++  +          V R GGEEFA     +    A  LAN + 
Sbjct: 192 YNDTYGHRAGDRCLQLVAKAIESCVNRPADVVARYGGEEFAVILPRTYPDGAIHLANAIC 251

Query: 201 KIIENSQI-NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +   QI +++S  +  +TISAG+A            II  AD+ALY AK +GR+    
Sbjct: 252 TAVRELQITHLTSQANTCVTISAGVATEIPVPNSDFQEIINAADRALYQAKMTGRDGCQQ 311

Query: 258 F 258
           +
Sbjct: 312 Y 312


>gi|307720930|ref|YP_003892070.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurimonas autotrophica DSM 16294]
 gi|306979023|gb|ADN09058.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurimonas autotrophica DSM 16294]
          Length = 592

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 93/190 (48%), Gaps = 19/190 (10%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL    +++   +  D L+GL N   F+  L           + ++++F DID FK+I
Sbjct: 152 LEELDTKRDQLEFQANHDALTGLPNRVLFMDRLTQAIKLAKREKQHVAVLFLDIDDFKKI 211

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+ GH VGD+++  ++ ++++       + RLGG+EF        + +      D+ KI
Sbjct: 212 NDSLGHHVGDEILIEVTQRMLLKMRKSDTLARLGGDEFCIIINNIKDID------DVSKI 265

Query: 203 IEN-----SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
           IEN         I+   +++I+IS G++      +    ++  +D A+Y AK++ R+R  
Sbjct: 266 IENGMEVFRDPFITQEHTLYISISVGVSLYPNDGKDAIALLKNSDAAMYKAKQNTRDRYS 325

Query: 257 CFSDIENNTC 266
            + +      
Sbjct: 326 FYDEEMTKKA 335


>gi|307720510|ref|YP_003891650.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
 gi|306978603|gb|ADN08638.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
          Length = 515

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 8/169 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
           L      + Q S+ D L+ L N  A    +         Y    +IV FDID+FK++ND 
Sbjct: 343 LEKELEAVKQESKEDFLTKLYNKRALDEFMNMKEGEYKRYGRNFAIVMFDIDHFKKVNDT 402

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD V++  +  L     T   +GR GGEEF +    +  Q   I A  +RK +E 
Sbjct: 403 YGHEAGDAVLSAFAKILKKESRTVDIIGRFGGEEFLSLLSETDLQGGVIFAEKVRKHVEK 462

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           ++  +  G  I +T+SAGI++R     +   +  AD+ LY AKK GRN+
Sbjct: 463 TRF-VYKGKRIKVTVSAGISQRSDHISLEAAVNSADEYLYKAKKEGRNK 510


>gi|260887451|ref|ZP_05898714.1| putative sensory box-containing diguanylate cyclase [Selenomonas
           sputigena ATCC 35185]
 gi|330840095|ref|YP_004414675.1| diguanylate cyclase [Selenomonas sputigena ATCC 35185]
 gi|260862814|gb|EEX77314.1| putative sensory box-containing diguanylate cyclase [Selenomonas
           sputigena ATCC 35185]
 gi|329747859|gb|AEC01216.1| diguanylate cyclase [Selenomonas sputigena ATCC 35185]
          Length = 589

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 10/189 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KL 129
           +I   L +   ++ KE   +++++  L+  D L+GL+N  A   S               
Sbjct: 402 SIIAHLVHFVDAMTKEWESAHSKLVVLAERDALTGLMNRRAMERSFKDILHDALASDIPF 461

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  D+D FK IND FGH +GD+ +  L+D L     +   V R GG+EF      +  
Sbjct: 462 AVMMLDMDDFKGINDTFGHAMGDEALVALADILRSSVRSVDIVSRWGGDEFFVILTHADR 521

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
             A  +   + +   +  + +    S  + +S G+      +   T+  RAD ALY +K+
Sbjct: 522 AAAERVVERIHRGASSLSLLMPDKRS--VGLSIGVTLSSAHDTPETVFQRADAALYESKR 579

Query: 250 -SGRNRVVC 257
            +G+N+V+ 
Sbjct: 580 TAGKNKVIF 588


>gi|240142670|ref|YP_002967183.1| putative diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylobacterium extorquens AM1]
 gi|240012617|gb|ACS43842.1| Putative diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylobacterium extorquens AM1]
          Length = 630

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 7/185 (3%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQ 141
           +          +  RI +L++ D L+ L N +AF++ +    E     +++  D+D FK+
Sbjct: 186 VLAEDATARTEAERRIRRLAQTDGLTELPNRTAFLAGVDREIEGGTPFALLCIDLDRFKE 245

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLR 200
           +ND  GHPVGD ++  +S +L  +        R GG+EF      +S+ +EAA LA  + 
Sbjct: 246 VNDTLGHPVGDALLREVSGRLRGLLRADDVAARFGGDEFVVLQRNASDVREAAALAMRIV 305

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFS 259
             I   +     G  I I  S GIA       +   +  +AD ALY AK +GR     F 
Sbjct: 306 DAI--GKPFRVEGYRIDIGASVGIACSPIDGNVRDELHRKADLALYRAKAAGRGTWRSFD 363

Query: 260 DIENN 264
              + 
Sbjct: 364 QSMDE 368


>gi|144898647|emb|CAM75511.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 569

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 12/204 (5%)

Query: 64  ILVENLSLVIISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  E+LS+  +      + GY++  + + +      R+   +  D L+GL N + F + L
Sbjct: 356 IYPESLSITQLRQPDGRMDGYVATFMDITDRKRREARVRWRAEHDSLTGLCNRAQFEARL 415

Query: 123 GSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     +   ++++ D+D FK +ND+ GH  GD+V+  ++ ++         V RL
Sbjct: 416 ADAVRIAADSSSLAAVMYLDLDGFKPVNDSLGHAAGDQVLKRVAKRIEAAVRGDDVVARL 475

Query: 176 GGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF     G ++  + A +A  L   +   Q       S+ I +S GIA         
Sbjct: 476 GGDEFVVLVEGLAAADDVARIAAKLVDSLA--QPFNIDHQSVTIGVSIGIALFPRDGTNP 533

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
           +T++  AD A+Y AK  GR     
Sbjct: 534 ATLLVAADTAMYQAKHQGRGGFAF 557


>gi|324324668|gb|ADY19928.1| sensory box, GGDEF family protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 568

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 88/175 (50%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++        +  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKREFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQA-- 250

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             I  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 251 PFILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 305


>gi|283785264|ref|YP_003365129.1| diguanylate cyclase YddV [Citrobacter rodentium ICC168]
 gi|282948718|emb|CBG88310.1| diguanylate cyclase YddV [Citrobacter rodentium ICC168]
          Length = 460

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 9/181 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LSI+  D+D FK
Sbjct: 281 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRAGTPLSILIIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +++ +   +A  +R
Sbjct: 339 EINDTWGHNTGDEILRRVSQAFYDNVRSSDYVFRYGGDEFIIVLTEATQADTLRIAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             +E ++I    G +I +++S G A          +I  AD+ALY AK+ GRNRV  +S 
Sbjct: 399 LRVEKTKIKSPDGATIPLSLSIGAAMFNGHPDYERLIQIADEALYTAKRQGRNRVELWSP 458

Query: 261 I 261
            
Sbjct: 459 A 459


>gi|254500844|ref|ZP_05112995.1| MASE1 domain family [Labrenzia alexandrii DFL-11]
 gi|222436915|gb|EEE43594.1| MASE1 domain family [Labrenzia alexandrii DFL-11]
          Length = 497

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 124/290 (42%), Gaps = 41/290 (14%)

Query: 8   FLSIWLCHEKNLESFSPHTF---MIYFSIFFS---IFIATVIFIANIFL-FYIGLTPFYG 60
           +++ W      ++SF        +++ S+  S   I  A +  I  I +   +G  P  G
Sbjct: 195 YIAFWSDVGGLMQSFELAVLPVLLMWASLRLSRIYISFALLFLIGGIIVPTALGQGPLQG 254

Query: 61  LEY-ILVENLSLVIISITISLLLGYISGSILK----------------------ELFISY 97
           ++    + N  L++  I + +L  + +   ++                      EL  + 
Sbjct: 255 IDRNTTLINTQLLLGVIGVLVLTLHATREQVRQQVQHLEHVKDTLDQKVRERTAELEEAK 314

Query: 98  NRISQLSRIDCLSGLLNHSAFI----SSLGSY---NEKLSIVFFDIDYFKQINDNFGHPV 150
            +  +L+  D L+G  N   F+      L       E   ++ FD+D+FK++ND +GH +
Sbjct: 315 RKAEELASTDALTGAPNRRVFLKRGNEELNRAIRGGEDACVIMFDLDHFKEMNDTYGHQI 374

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+++   +   +         GR+GGEEFA     ++      +A  LR+      +  
Sbjct: 375 GDRILKDCAAVTMGFVRNYDLFGRIGGEEFAVFLPNTTVSGGQNVAEKLRQAFLERSV-- 432

Query: 211 SSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            S   ++ T S GI+    K+  +S ++ RAD A+Y AK  GRN VV + 
Sbjct: 433 -SSHKLNYTASFGISPVLEKDRALSMVLRRADLAMYRAKADGRNCVVVYE 481


>gi|77747957|ref|NP_639075.2| response regulator [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|77761313|ref|YP_244860.2| response regulator [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 501

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 14/201 (6%)

Query: 71  LVIISITISLLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAF-------IS 120
           ++ I +  + L+     + LK   EL ++Y  +  ++  D L+GL N           I 
Sbjct: 299 ILPIPVLFATLISRQIKTTLKVEDELRLAYAAVEAIAMQDSLTGLANRRQLDVVLPAEIK 358

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEE 179
                ++ L ++  DIDYFK+ ND +GHP GD  I  +++ L            R GGEE
Sbjct: 359 RAKRTSQPLGVIMVDIDYFKRYNDYYGHPAGDLCIKAIANVLKNHTRRAGNLAARYGGEE 418

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH---KEPISTI 236
                    +      A  + + I   QI     P  ++T+S G         +   S +
Sbjct: 419 LTVLLPSCDQAAVLAAAERIVESIRGLQIAHDDSPEGYLTVSVGAYSYSAFNKEVDASGL 478

Query: 237 IYRADQALYVAKKSGRNRVVC 257
           +  AD ALY AK++GRNR   
Sbjct: 479 LKCADDALYAAKQAGRNRARL 499


>gi|288918129|ref|ZP_06412486.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EUN1f]
 gi|288350511|gb|EFC84731.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EUN1f]
          Length = 1530

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 83/193 (43%), Gaps = 30/193 (15%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQIN 143
           ++   +  + +   ++ D L+GL N + F   L +        E +S++F D+D+FK IN
Sbjct: 455 IERRRVLLDELGFQAQHDPLTGLANRATFDDRLATALADREPAEPVSVLFIDLDHFKPIN 514

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM----------------------FVGRLGGEEFA 181
           D +GH  GD+V+  ++++L  V                              R GG+EF 
Sbjct: 515 DTYGHAAGDRVLTVVAERLTAVLTAVPAAGAKAAAPAADAVPPMAAGTPTPCRFGGDEFG 574

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
               G  E+ AA LA  +  ++   +  +     + +  S G+       P   ++  AD
Sbjct: 575 VVLPGVDEESAAELAERIGAVLR--EPIVLDTAEVTVDASIGVGVTRAACPPEHLVRTAD 632

Query: 242 QALYVAKKSGRNR 254
           +A+Y AK +GR  
Sbjct: 633 EAMYRAKAAGRGC 645



 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 98   NRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
             ++ + +R D L+GL N +A    L          +I+  D+D FK IND FGH VGD V
Sbjct: 1194 EQLRRRARHDPLTGLPNRAALAEHLETISRDQAAFAILLVDLDRFKPINDTFGHAVGDHV 1253

Query: 155  IAFLSDQLVVVFGTPMFVGR 174
            +   + ++  +  +    G 
Sbjct: 1254 LRVAAARIRRILTSEGDTGS 1273



 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 11/105 (10%)

Query: 155  IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS--------EQEAAILANDLRKIIENS 206
            +  ++ +          V R+GG+EF A   GS+        E  A   A+ +   +   
Sbjct: 1360 LCGIAGR-AWYRPERGAVFRVGGDEFVAVLAGSTAPTGGLDVETVAWDAADRITSALR-- 1416

Query: 207  QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
            +  ++ G  + +  + G+A          +I  AD A+Y AK++G
Sbjct: 1417 RPILADGQLVSVGATVGVALSRGVADPQAVIGLADAAMYEAKRAG 1461


>gi|253995469|ref|YP_003047533.1| diguanylate cyclase [Methylotenera mobilis JLW8]
 gi|253982148|gb|ACT47006.1| diguanylate cyclase [Methylotenera mobilis JLW8]
          Length = 450

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 92/197 (46%), Gaps = 12/197 (6%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GS 124
            I+   +  L     G+ +  +  +  R+S+ + +D L+ L N       +         
Sbjct: 254 FIVYQLLGFLFSLFCGAAVYRMIHAMRRLSEQAMLDSLTHLPNRRLLQDRMDIAYHSCNR 313

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
            ++ ++++  DIDYFK+IND +GH  GD+VI  +++ +         V R+GG+EF    
Sbjct: 314 SHKMMAVLIIDIDYFKKINDTYGHDFGDEVIKTVANGIKATLRDTDTVSRVGGDEFIVLL 373

Query: 185 LG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRAD 241
                 +    +A+ L ++  +  + +    +IH+  S G++    + P  I  ++  AD
Sbjct: 374 KEFKVLENVHSIAHKLTEVFASPWLVLDKEITIHL--SIGVSVYDPENPVGIKELLKEAD 431

Query: 242 QALYVAKKSGRNRVVCF 258
            ALY +K  GRNR   +
Sbjct: 432 IALYDSKAQGRNRFNFY 448


>gi|119493530|ref|ZP_01624196.1| two-component response regulator [Lyngbya sp. PCC 8106]
 gi|119452647|gb|EAW33828.1| two-component response regulator [Lyngbya sp. PCC 8106]
          Length = 596

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 65/277 (23%), Positives = 121/277 (43%), Gaps = 20/277 (7%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI 64
           + D     +C     +  +    +I+ S    +F     F     + YI   PF   E +
Sbjct: 64  MPDLDGYEVCSRLKADPKTADVPIIFLSALDDVFDKVKAFTVGA-VDYIS-KPFQSQEVL 121

Query: 65  --LVENLSLVIISITISLLLGYISGSI---LKELFISYNRISQLSRIDCLSGLLNHSAFI 119
             +  +L+L  ++ +IS L   +   +    ++L   + +++ L+  D L+GL N + FI
Sbjct: 122 ARVQHHLALQAMNQSISKLNTELEQQVKERTQQLEEVHAKLTTLAFHDELTGLPNRALFI 181

Query: 120 SSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           +SL           +++ ++++ D D FK +ND+ GH VGD+++  ++ +L     +   
Sbjct: 182 NSLNEALKNNQADSSDQFALLYIDCDRFKVVNDSLGHSVGDRLLTAVAHRLSNALPSVQI 241

Query: 172 VGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
           + RLGG+EFA       E + A  +A  + + +            +++  S GIA     
Sbjct: 242 LARLGGDEFAILLTNIQEIKPAVEVAEKVIETL--LTPFKLEKYDVYVNASIGIALSNES 299

Query: 231 EP-ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
                 I+  AD A+Y AKK G NR   F    +   
Sbjct: 300 YTQPQHILRDADAAMYRAKKQG-NRYQVFDPTMHQKA 335


>gi|56415314|ref|YP_152389.1| diguanylate cyclase/phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197364244|ref|YP_002143881.1| hypothetical protein SSPA3040 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56129571|gb|AAV79077.1| putative membrane domain involved in signal transduction;
           Diguanylate cyclase/phosphodiesterase domain 1;
           Diguanylate cyclase/phosphodiesterase domain 2
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197095721|emb|CAR61291.1| putative membrane domain involved in signal transduction;
           Diguanylate cyclase/phosphodiesterase domain 1;
           Diguanylate cyclase/phosphodiesterase domain 2
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
          Length = 699

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 114/273 (41%), Gaps = 21/273 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIA--------NIFLFYIGLTPFYGL 61
           ++WL      E           ++   I IA + +          N  + + G+   +  
Sbjct: 156 ALWLTFRLRNEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLA 215

Query: 62  EYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
             + V  L+++ I++ +SL    +      +   L  +   ++QL+  D L+ L N    
Sbjct: 216 VLVSVVALTILGITLLVSLFDARLQARTALLASSLAQANQELAQLALHDTLTRLPNRVLL 275

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L              +++F D+D FK +ND +GH +GDK++  ++ +L         
Sbjct: 276 EDRLEQAISKANREGTSFALLFMDLDGFKAVNDAYGHDIGDKLLVAVTHRLNQPLSGQFT 335

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF   A  S+  EAA LA+ L   I+           + +T+S GIA      
Sbjct: 336 LARIGGDEFVLLAEVSAPDEAASLASALVHSIDA--PFTIDPYELVVTLSVGIALYPLDG 393

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +    +++ AD A+Y  K +GRN    F    N
Sbjct: 394 KNERELMFNADAAMYHTKHTGRNGYHFFQPSMN 426


>gi|186685808|ref|YP_001869004.1| response regulator receiver modulated diguanylate cyclase [Nostoc
           punctiforme PCC 73102]
 gi|186468260|gb|ACC84061.1| response regulator receiver modulated diguanylate cyclase [Nostoc
           punctiforme PCC 73102]
          Length = 341

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 59/179 (32%), Positives = 87/179 (48%), Gaps = 11/179 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
           + K+L  +   +  L+ +D L+ L N   F         +L      LS++  DIDYFK 
Sbjct: 160 VYKQLEAANQALQHLANVDGLTELANRRRFDDYLNTQWINLAQEESPLSMILCDIDYFKF 219

Query: 142 INDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND +GHP GD  +  +   L +        V R GGEEFA     +    A  +A  ++
Sbjct: 220 YNDKYGHPAGDVCLQKVGAVLNLKAQKHQDLVARYGGEEFAVIMPYTHASGAIHVAATIQ 279

Query: 201 KIIENSQI-NISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVV 256
             I++ QI +  S  S H+T+S G+A      +   S +I RAD+ALY AK  GR+R V
Sbjct: 280 AGIKDLQIAHAGSAVSQHVTLSMGVATVVPTWESSPSDLIVRADKALYQAKAGGRDRFV 338


>gi|325926523|ref|ZP_08187840.1| diguanylate cyclase with GAF sensor [Xanthomonas perforans 91-118]
 gi|325543095|gb|EGD14541.1| diguanylate cyclase with GAF sensor [Xanthomonas perforans 91-118]
          Length = 388

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 13/173 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           ++      + + +R D L+GL N  AF            +  + LS+   D+D+FK +ND
Sbjct: 220 QMDALNADLVEQTRTDPLTGLPNRRAFAVALAAATEQTRAVGQPLSVALLDVDHFKTVND 279

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD V+  LS  L         + R GGEEF      +   +A +    LR+ + 
Sbjct: 280 VHGHDQGDAVLRELSALLRAHMAGAGTIARYGGEEFVLLLPNTDLLQARVQCEYLRQSVA 339

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              I +       +T+S G+A    +E +  +I RADQALY AK+ GR++VV 
Sbjct: 340 AMTIALP------VTVSIGVATLYPQESVEAVIKRADQALYAAKRGGRDQVVA 386


>gi|319763264|ref|YP_004127201.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|317117825|gb|ADV00314.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
          Length = 334

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 82/180 (45%), Gaps = 17/180 (9%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKLS----------IVFFDIDYFKQ 141
           + +Y  +   S  D L+GLLN   F         +   +          +   DID+FK 
Sbjct: 142 YQNYQNLLDYSERDALTGLLNRKTFEEQFARDAGSAPAADGGADLPRPWLAVIDIDHFKS 201

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND FGH  GD+V+  +++ L     +   + R GGEEF       +  +A  +   LR 
Sbjct: 202 VNDRFGHLYGDEVLILVANVLRAQCKSQDRIFRFGGEEFVVLLRSVTLAQARQVFERLRA 261

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            ++            HIT S G A      P+  ++ RADQALY AK+SGRNRV  + D+
Sbjct: 262 AMQAHAFPQIG----HITASIGFAASQRGSPVE-VLGRADQALYHAKESGRNRVCFYDDL 316


>gi|294624551|ref|ZP_06703228.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292601157|gb|EFF45217.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 507

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 77/179 (43%), Gaps = 14/179 (7%)

Query: 95  ISYNRISQLSR---IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
            S NR+  L+     D L+G+ N                     LSI F D+D FK++ND
Sbjct: 316 ESENRMRHLAEQASRDALTGVFNRHQLGTALTHEFELASRQGWPLSIAFIDLDDFKRVND 375

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD+V+   +  L  +  T   V R GGEEF      +    A ++   +     
Sbjct: 376 AHGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEFLVILPNTPADAALMVIERILAETA 435

Query: 205 NSQINISSGPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +    G  +HIT SAG+A     E     I  ++  AD  LY +K  GRNRV  + 
Sbjct: 436 RTPMAQLQGGPLHITFSAGLATHGGAERQFDSIDHLLQAADSTLYRSKHRGRNRVTAYD 494


>gi|189424903|ref|YP_001952080.1| diguanylate cyclase with GAF sensor [Geobacter lovleyi SZ]
 gi|189421162|gb|ACD95560.1| diguanylate cyclase with GAF sensor [Geobacter lovleyi SZ]
          Length = 356

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 59/189 (31%), Positives = 95/189 (50%), Gaps = 10/189 (5%)

Query: 81  LLGYIS--GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
           LLG ++   +I  +   +Y R+S+L   D L+GL N   F       +     Y  ++S+
Sbjct: 160 LLGAVADFAAIAIDNARNYRRVSELVVTDDLTGLHNARHFHELLEYELERSRRYKSQVSL 219

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +FFD+D+FK++ND FGH VG ++IA +   +     +     R GG+E+      + +Q 
Sbjct: 220 LFFDLDHFKEVNDRFGHLVGSRMIAEVGHLVKRHIRSSDRAARYGGDEYVVVLPNTGKQG 279

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250
           A  +A +L +          S   + IT S G A         +++I  AD A+Y AK++
Sbjct: 280 ALSVATNLLERFRAHLFLTDSNERVPITASFGAATFPDDAHDRTSLIRAADSAMYEAKEA 339

Query: 251 GRNRVVCFS 259
           GRNRV  FS
Sbjct: 340 GRNRVEYFS 348


>gi|17547151|ref|NP_520553.1| hypothetical protein RSc2432 [Ralstonia solanacearum GMI1000]
 gi|17429453|emb|CAD16139.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum GMI1000]
          Length = 551

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 13/206 (6%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR----ISQLSRIDCLSGLLNH 115
            L ++L  +  LV + +  SLL       + + L  S  R    ++  +  D L+G+L  
Sbjct: 344 SLGFVLFLSGLLVFVLVVWSLLRERQHHRVTRHLNQSLQRTNSALANEAHFDHLTGVLTR 403

Query: 116 SAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
             F++   +         E+L +V  D+D+FK+IND +GH VGD  +   +     V  +
Sbjct: 404 RRFLALFETVLTRTHVRGEQLVLVLADLDHFKRINDTWGHAVGDLALQRFASLATSVMRS 463

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
              +GRLGGEEFA     ++ +EAA +   LR  +  +  ++ SG  + +T+S G+    
Sbjct: 464 SDLIGRLGGEEFAVVMGRTTLEEAAGVVERLRAAVAEADASLPSG--LAMTVSLGMTACH 521

Query: 229 HKEPISTIIYRADQALYVAKKSGRNR 254
             +  S ++ RAD ALY AK+SGRNR
Sbjct: 522 TGDTASEMLRRADLALYRAKESGRNR 547


>gi|309778432|ref|ZP_07673348.1| putative diguanylate cyclase (GGDEF) domain protein
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308913808|gb|EFP59632.1| putative diguanylate cyclase (GGDEF) domain protein
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 715

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 9/189 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-----SIVFFDIDY 138
           Y +G  + E      R+   +  D L+G+ N  A    + +Y ++      +++  D D 
Sbjct: 339 YSTGLDITEERRQLERLRHKAEKDALTGINNRDAMKVQIKNYLQEQPDTMNALIMIDTDN 398

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FKQIND  GH  GD V++ ++  +  +      VGR+GG+EF       +S Q A   A 
Sbjct: 399 FKQINDTLGHITGDLVLSEMAAGMKKIVRKSDLVGRIGGDEFTIFIKNITSPQIAEEKAE 458

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
           +L  +     + I     + +T S GI+      E    +   AD+ALY AK  G+N   
Sbjct: 459 ELLSMFR--HLFIREKKPLKVTCSMGISLYPRDGESFQELYECADKALYQAKLHGKNNYH 516

Query: 257 CFSDIENNT 265
            +  +E +T
Sbjct: 517 MYDPMEQST 525


>gi|296101460|ref|YP_003611606.1| diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295055919|gb|ADF60657.1| diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 594

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 11/177 (6%)

Query: 93  LFISYNRIS----QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           L ++  R+     + +  D L+GL N      +L           E +S +  DID+FK 
Sbjct: 412 LALANQRLRDALLEKALFDPLTGLRNRHHLEDTLRTQMAQAVRNEEPVSCLMIDIDHFKS 471

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH  GD+VI  ++  +           R GGEEF     G  E+ A   A ++  
Sbjct: 472 INDRFGHEAGDQVIKSVASIVQRAVHDSGLAFRYGGEEFLVLLSGVDEEAAQACAKEIYN 531

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +    +         + +S G+A          ++  AD ALY AK+ GR+R+V F
Sbjct: 532 GVHELSLRYGLSEIGPVDVSIGVASYPQHAQSDNLLRAADVALYRAKELGRSRIVSF 588


>gi|260778484|ref|ZP_05887376.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604648|gb|EEX30943.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 361

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 26/202 (12%)

Query: 77  TISLLLGYISGSILKE-----LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
            + L+  +I   +++      L    +++   +  D L+ + N           I  +  
Sbjct: 150 ALKLMASWIEVELIRRKQEERLRKLNSQLEYQAYHDALTNVANRRCMFKTIHLDIERMKL 209

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
            + K S+   DID FK++ND +GH +GD V+   + QL        F+ R GGEEF    
Sbjct: 210 ASGKGSLAVIDIDNFKRVNDVYGHQIGDDVLKKTAQQLQACLSERDFIARFGGEEFVVWL 269

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---------IST 235
              +E E   L  +L +    ++I +   P   +T+S G+ E               +  
Sbjct: 270 PERTELERRQLIEELHQ--SANEILLDGEP---VTVSIGVCEFDFGNESEIDNKKGALDQ 324

Query: 236 IIYRADQALYVAKKSGRNRVVC 257
           II  AD+ALY AK  GRNRVV 
Sbjct: 325 IILVADEALYQAKNQGRNRVVV 346


>gi|302878539|ref|YP_003847103.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
 gi|302581328|gb|ADL55339.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
          Length = 927

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 86/199 (43%), Gaps = 18/199 (9%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           L +     + E      ++  L+  D L+ L N    +  L              +++F 
Sbjct: 468 LLFFIVHDITERRHLEEKMHDLAFYDLLTKLPNRRLLLDRLEKALLSGTRSRHHSALMFL 527

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE----- 189
           D+D+FK +ND  GH +GD+++  ++++++          R GG+EF       SE     
Sbjct: 528 DLDHFKVLNDLHGHDIGDQLLVEVANRILGCIREQDSAARFGGDEFVVMIEDLSENLSDA 587

Query: 190 -QEAAILANDLRKIIENSQINISSGPSI---HITISAGIAE-RCHKEPISTIIYRADQAL 244
             +A  +A  +R  +    + +  G  +   H + S G+   R H+E +  ++   D A+
Sbjct: 588 VNQADSVAEKIRCALAAPYL-LKRGEEVISHHCSSSIGVTLFRDHEENLEQLLKWTDMAM 646

Query: 245 YVAKKSGRNRVVCFSDIEN 263
           Y AK +GRN +  F  +  
Sbjct: 647 YHAKDAGRNVIRFFDPVMQ 665


>gi|168465468|ref|ZP_02699350.1| AdrA protein [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195631582|gb|EDX50102.1| AdrA protein [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 370

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 104/232 (44%), Gaps = 12/232 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            F++ +  ++    + L   GL P       L   LSL +I +   LL  ++S     +L
Sbjct: 141 LFTVGMGLLLASCLVTLQLTGL-PVAMRSSSLEVTLSLPVIML-YPLLFAWVSYQTAIKL 198

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
                R+  +S  D ++G+ N   +             ++ + +++  DID+FK IND +
Sbjct: 199 AEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFDHSRRHHREATLLIIDIDHFKSINDTW 258

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ I  L+ QL +       +GR GG+EFA    G+    A    + + + +   
Sbjct: 259 GHDVGDEAIIALTRQLQLTLRGSDIIGRFGGDEFAVIMCGTPADSAITAMSRVHERLNTL 318

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++     P + + IS G+A    +       +  AD ALY AK +GRNR   
Sbjct: 319 RLP--GAPQVMLRISVGVAPLTPQIGHYREWLKSADMALYKAKNAGRNRTEV 368


>gi|218900540|ref|YP_002448951.1| ggdef family protein [Bacillus cereus G9842]
 gi|218541164|gb|ACK93558.1| ggdef family protein [Bacillus cereus G9842]
          Length = 352

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 9/214 (4%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           ++  I +   Y      +  + L +IS  I+  + +IS + + +    +  + Q + +D 
Sbjct: 137 YILSILIPSLYIWLIKDINIVGLYLISSIITGYITFISANYVLQSNELFQTMKQYATVDA 196

Query: 109 LSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GL N   F   +  +       N+ L ++  DID+FK +ND +GHP GD+V+  +   
Sbjct: 197 LTGLGNVRQFDLEMNRHISNKNMKNDSLCLLLIDIDHFKYVNDTYGHPAGDEVLKQVGCI 256

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L      P    R GGEEFA             +   +   +E+    +  G  I IT+S
Sbjct: 257 LRETSQFPDLAFRKGGEEFALLIPNKGLAYGIRMGEQICIAVESHPFQLLDGTKIKITVS 316

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G++E   +      I  AD ALY +K++GRN+V
Sbjct: 317 VGVSEY--EGSSEQFIQAADDALYYSKRNGRNKV 348


>gi|161616413|ref|YP_001590378.1| hypothetical protein SPAB_04222 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161365777|gb|ABX69545.1| hypothetical protein SPAB_04222 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 699

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 112/273 (41%), Gaps = 21/273 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFY--------IGLTPFYGL 61
           ++WL      E           ++   I IA + +       +         G+   +  
Sbjct: 156 ALWLTFRLRHEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMENRGVDSNWLA 215

Query: 62  EYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
             + V  L+++ I++ +SL    +      +   L  +   ++QL+  D L+ L N    
Sbjct: 216 VLVSVVALTILGITLLVSLFDARLQARTALLASSLAQANQELAQLALHDTLTRLPNRVLL 275

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L              +++F D+D FK +ND +GH +GDK++  ++ +L         
Sbjct: 276 EDRLEQAISKANREGSSFALLFMDLDGFKAVNDAYGHDIGDKLLVAVTHRLNQPLSGQFT 335

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF   A  S+  EAA LA+ L   I+           + +T+S GIA      
Sbjct: 336 LARIGGDEFVLLAEVSAPDEAASLASALVHSIDA--PFTIDPYELVVTLSVGIALYPLDG 393

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +    +++ AD A+Y  K +GRN    F    N
Sbjct: 394 KNERELMFNADAAMYHTKHTGRNGYHFFQPSMN 426


>gi|323204003|gb|EFZ89020.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
          Length = 365

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 105/232 (45%), Gaps = 12/232 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            F++ +  ++    + L   GL P       L   LSL++I +   LL  ++S     +L
Sbjct: 136 LFTVGMGLLLASCLVTLQLTGL-PVAMRSSSLEVTLSLLVIML-YPLLFAWVSYQTAIKL 193

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
                R+  +S  D ++G+ N   +             ++ + +++  DID+FK IND +
Sbjct: 194 AEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFDHSRRHHREATLLIIDIDHFKSINDTW 253

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ I  L+ QL +       +GR GG+EFA    G+    A    + + + +   
Sbjct: 254 GHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEFAVIMCGTPADSAITAMSRVHERLNTL 313

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++     P + + IS G+A    +       +  AD ALY AK +GRNR   
Sbjct: 314 RLP--GAPQVMLRISVGVAPLTPQIGHYREWLKSADMALYKAKNAGRNRTEV 363


>gi|222147769|ref|YP_002548726.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221734757|gb|ACM35720.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 1051

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 83/179 (46%), Gaps = 13/179 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL ++ NRI   +  D L+GL N      +L S          + +I+  D+D FK+IND
Sbjct: 611 ELELTKNRIEFNALHDPLTGLANRRKLDIALDSLTRQSQANRSRFTILHLDLDRFKEIND 670

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
             GH  GD ++   +  L     +   V R+GG+EF     G    + AA LA  +   I
Sbjct: 671 TLGHAAGDAMLVNAARVLSRHMNSGDLVARIGGDEFVVLLHGPIDAKAAAELAERI---I 727

Query: 204 ENSQINIS-SGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++  I +   G      +S GIAE    +     I+  AD ALY AK+ GRN    F+D
Sbjct: 728 QDINIPVDFEGFICRCGVSIGIAEAKGLRTDARKILINADLALYEAKRQGRNCFQFFTD 786


>gi|119775299|ref|YP_928039.1| sensory box protein [Shewanella amazonensis SB2B]
 gi|119767799|gb|ABM00370.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella amazonensis SB2B]
          Length = 1431

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 7/184 (3%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIND 144
            S +         + +L+  D L+GL N S     +++L   +   +++  D+D FK+IND
Sbjct: 982  SDISRRKQQEEELRKLTNNDLLTGLPNRSNLQVSLNNLVKKDTHHTLMVLDLDNFKKIND 1041

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKII 203
            + GH VGD+++  +S ++         + RLGG+EFA           AA +A  L    
Sbjct: 1042 SLGHQVGDELLQLVSRRMSAALPGHTSLYRLGGDEFAVLLDKDPDIGSAAAIAKGLVDAF 1101

Query: 204  ENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDIE 262
                    +G  + + +S GI      E     ++ +AD A+Y AK +G NR   +S+  
Sbjct: 1102 --VAPFELAGEKLVVGVSIGIVLYPEDEQNEQALLRKADIAMYHAKSAGGNRYQFYSESL 1159

Query: 263  NNTC 266
            N   
Sbjct: 1160 NRNA 1163


>gi|254563188|ref|YP_003070283.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens
           DM4]
 gi|254270466|emb|CAX26466.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL) with
           PAS/PAC sensor [Methylobacterium extorquens DM4]
          Length = 700

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 58/190 (30%), Positives = 91/190 (47%), Gaps = 12/190 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNE-KLSIVFFDID 137
           +   + E   +  RI  ++R D L+ L N +         +++L +  E  L+++  D+D
Sbjct: 247 TFEDITERRRNEARIIHMARHDGLTDLPNRTRLREVGAEWLAALRTDAEAPLAVLCLDLD 306

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND+FGH VGD ++  ++D+L     +   V RLGG+EFA  +       AA LA 
Sbjct: 307 RFKPVNDSFGHAVGDALLRAVADRLRGHVRSHDVVARLGGDEFAVLSRVEDAAAAAALAE 366

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255
            L + +         G ++ I +SAGIA         I  ++  AD ALY AK  GR  V
Sbjct: 367 RLIETVAA--PYTLDGITVEIGMSAGIALAEGDVPHDIERLLKEADLALYEAKTEGRGTV 424

Query: 256 VCFSDIENNT 265
             F    + T
Sbjct: 425 RLFEPQMDET 434


>gi|167588064|ref|ZP_02380452.1| diguanylate cyclase [Burkholderia ubonensis Bu]
          Length = 374

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 11/168 (6%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDK 153
            +L+  D L+GL N       L +   +       LS++  D+D FK  ND +GH  GD 
Sbjct: 191 RRLTHSDGLTGLSNRRYLDEYLSAEWRRGAREHAVLSLLMIDVDNFKLYNDTYGHVSGDD 250

Query: 154 VIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INIS 211
           V+  ++  +            R GGEEFA    G+S     +LA  +R  IE  + ++  
Sbjct: 251 VLKQIAATVERCLGRAGDLAARFGGEEFAVVLPGTSPGGLRLLAEKIRLAIEALKLLHEQ 310

Query: 212 SGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
           S    ++TIS G A        P ++++  AD+ALY AK+ G+NRV  
Sbjct: 311 SSTGRYVTISIGGASIVPTIDAPTTSLLEAADRALYRAKRDGKNRVAI 358


>gi|170743149|ref|YP_001771804.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium sp. 4-46]
 gi|168197423|gb|ACA19370.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium sp. 4-46]
          Length = 300

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 67/185 (36%), Positives = 95/185 (51%), Gaps = 10/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDID 137
           Y      + +      + +L+  D L+ LLN  AF+  +         + KL++V  DID
Sbjct: 113 YARLRAAERVTRMQRELIRLAETDSLTELLNRRAFVQRVAEIAGRAGNHGKLALVVADID 172

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK+IND  GH +GD  I  ++  L  V  +   VGRLGGEEF  A  G S +EA  +AN
Sbjct: 173 NFKRINDEHGHALGDVAIQGVATALSEVPDS--LVGRLGGEEFGVALPGRSLEEAEAIAN 230

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV- 256
            LR      +     GP + ++ S G++     E I  +  RAD ALY AK +GRNRVV 
Sbjct: 231 RLRLRCTQLRFKGRHGP-VQLSCSFGVSAWSEGETIEGLHKRADIALYEAKATGRNRVVS 289

Query: 257 CFSDI 261
            F+D+
Sbjct: 290 AFTDL 294


>gi|187479495|ref|YP_787520.1| signaling protein [Bordetella avium 197N]
 gi|115424082|emb|CAJ50635.1| Putative signaling protein [Bordetella avium 197N]
          Length = 265

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 8/181 (4%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFF 134
           +  IS      +      + + SR D L+GLLN  A +           +      +   
Sbjct: 79  IARISDHYQSMMRDLNRTLEETSRRDPLTGLLNRRALMDIIRMEVRRSDANKRPFVLAML 138

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D+FK +ND +GH  GD+V+  L+  L          GR GGEEF      +  +    
Sbjct: 139 DVDHFKAVNDRYGHEAGDRVLVELAALLQRSMRAGDLCGRWGGEEFLLVLPDTDLETGQG 198

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + + +   +    I++ +G ++ +T S G+A+      +S  + RADQALY+AK  GR+R
Sbjct: 199 VMDRVVGAVRGLAIDV-AGETLRLTASVGMADHQMGATLSDALNRADQALYLAKHEGRDR 257

Query: 255 V 255
           V
Sbjct: 258 V 258


>gi|238788481|ref|ZP_04632274.1| phosphodiesterase [Yersinia frederiksenii ATCC 33641]
 gi|238723394|gb|EEQ15041.1| phosphodiesterase [Yersinia frederiksenii ATCC 33641]
          Length = 864

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 10/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           S+  E  +S  +I  L+  D L+GL N S F       I+        L+++  ++D FK
Sbjct: 421 SLAMEREVSRKQIQHLAFYDSLTGLPNRSQFLIYAKKTIALAAEVGHSLAVLVINLDRFK 480

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND+ GH  GD+++A ++ +L         +GRL G+EF       + Q+A +    + 
Sbjct: 481 QVNDSLGHAAGDELLASIAQRLRNELPKNDIIGRLSGDEFIIILSSCTMQQATVKVEKML 540

Query: 201 KIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++  SQ  + +  +I  + S GI+      E + T++  AD A++ AK  G      FS
Sbjct: 541 SLL--SQPCMIANVNIIPSASIGISLYPENGEEMDTLMNHADIAMHKAKNRGHGHFNFFS 598

Query: 260 DIENN 264
              N+
Sbjct: 599 VEMND 603


>gi|299068067|emb|CBJ39281.1| conserved membrane protein of unknown function, putative signal
           transduction, ggdef domain [Ralstonia solanacearum
           CMR15]
          Length = 953

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 10/179 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
           Y     + +   +   +S+++  D L+GL N       L             + +++ D+
Sbjct: 773 YAFVQDVTDAKRNEMELSRMAHFDALTGLANRYELYERLRAALERRQRQPAPMGVLYLDV 832

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAIL 195
           D+FK+IND +GH  GD V+  ++ +L         V RL G+EF        +  +A   
Sbjct: 833 DHFKRINDTYGHAAGDAVLVEVARRLQHTVRRTDTVARLAGDEFVILLDPIDTPDDALHT 892

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253
           A  +   I    I +    ++++T S G+A           ++  AD+ALY AK  GR+
Sbjct: 893 AGKVVAAIR-PPILLRGDIALNVTASIGVACPSPEAADADAVLREADRALYWAKSRGRD 950


>gi|157962146|ref|YP_001502180.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157847146|gb|ABV87645.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
          Length = 350

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 86/174 (49%), Gaps = 10/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDN 145
           L      +  +   D L+ L N  AF   + S+ +         S++  DIDYFK+ ND 
Sbjct: 168 LKTEMVELRSVVMTDQLTSLNNRRAFDKEVISHIDSFNLSNVESSLLVVDIDYFKKFNDV 227

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH +GDKV+A+++  L        FV R GGEEF      +S Q+A  +A ++R  I  
Sbjct: 228 HGHLIGDKVLAYVAQALKNAVKGEDFVARYGGEEFVVLLPNTSHQDAHKVAENIRIKIAG 287

Query: 206 SQINISSGPSI---HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             + I     +   ++T+S G+A     +   +   RAD+ALY AK SGRN V+
Sbjct: 288 RNLTIGKEKKLPLGNVTVSVGVASLKASDDKDSYFIRADEALYRAKSSGRNCVI 341


>gi|307608779|emb|CBW98168.1| hypothetical protein LPW_00301 [Legionella pneumophila 130b]
          Length = 976

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 11/183 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + +       +   +  D L+ L N    ++ L          N+KL+++F D+D FKQ
Sbjct: 536 DVTQKKSYEEMLKHQATFDNLTNLPNRLYAVNKLERAISKSHINNQKLAVLFLDLDEFKQ 595

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           IND+ GH +GD ++  LS++ + +      + RLGG+EF         +++A I+A   R
Sbjct: 596 INDSLGHAIGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILENIMQDKDAEIIAKKCR 655

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +I   SQ  +     + ++ S GIA    H +   T++  AD A+Y +K  G+N    F 
Sbjct: 656 EIC--SQPFVIESQELLVSTSIGIAIYPEHGKDAKTLMRNADTAMYQSKIRGKNNWTVFQ 713

Query: 260 DIE 262
           +  
Sbjct: 714 NTM 716


>gi|288923860|ref|ZP_06417943.1| diguanylate cyclase [Frankia sp. EUN1f]
 gi|288344799|gb|EFC79245.1| diguanylate cyclase [Frankia sp. EUN1f]
          Length = 1228

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 10/170 (5%)

Query: 95   ISYNRISQLSRIDCLSGLLNHSAFISSL-----GS--YNEKLSIVFFDIDYFKQINDNFG 147
              Y      +  D L+GL N   F+             +   S    D+D FKQ+ND  G
Sbjct: 1057 RLYEEARHSAATDPLTGLPNRRHFVEQATVEADARLPADRPTSAAMIDVDRFKQVNDLHG 1116

Query: 148  HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
            H VGD+V+  ++ ++          GRLGGEEFA    G     A  L   +R  +    
Sbjct: 1117 HAVGDEVLVEIAHRIERCLRRGDLAGRLGGEEFAVLVTG-GPDVAHALGERVRLAVCERP 1175

Query: 208  INISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
            +  S+GP +H+T+S G A     EP ++ ++  ADQ+LY AK +GRN+ V
Sbjct: 1176 VQTSAGP-LHVTVSVGTATVDPDEPSLAAVLAHADQSLYAAKSAGRNQTV 1224


>gi|251795051|ref|YP_003009782.1| diguanylate cyclase [Paenibacillus sp. JDR-2]
 gi|247542677|gb|ACS99695.1| diguanylate cyclase [Paenibacillus sp. JDR-2]
          Length = 559

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 91/185 (49%), Gaps = 17/185 (9%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           +  ELF +  ++  ++  D L+G  N    +  L         +    SI  FDID FK 
Sbjct: 370 MQDELFQANKKLEHMAITDGLTGCYNRRYLLQQLEHEIAVNVQFGIPFSIFLFDIDLFKA 429

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH VGD+VI    + +     +   + R GGEEF      ++  +A I+A+ +++
Sbjct: 430 INDQYGHLVGDEVICSTVEAVKNTLRSADILARYGGEEFTVYLPHTTRDQADIIADMVKE 489

Query: 202 IIENSQINISSG-PSIHITISAGI---------AERCHKEPISTIIYRADQALYVAKKSG 251
            +E + +    G  S+ +TIS G+         A    K  +  ++ +AD ALY AK +G
Sbjct: 490 SVEQNVVRTGIGSQSVRVTISMGVVSVEQFDERALDDPKAFLRELLAQADAALYEAKYNG 549

Query: 252 RNRVV 256
           RNR+V
Sbjct: 550 RNRIV 554


>gi|168232352|ref|ZP_02657410.1| AdrA protein [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194468530|ref|ZP_03074514.1| AdrA protein [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194454894|gb|EDX43733.1| AdrA protein [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205333325|gb|EDZ20089.1| AdrA protein [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 370

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 104/232 (44%), Gaps = 12/232 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            F++ +  ++    + L   GL P       L   LSL +I +   LL  ++S     +L
Sbjct: 141 LFTVGMGLLLASCLVTLQLTGL-PVAMRSSSLEVTLSLPVIML-YPLLFAWVSYQTAIKL 198

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
                R+  +S  D ++G+ N   +             ++ + +++  DID+FK IND +
Sbjct: 199 AEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFDHSRRHHREATLLIIDIDHFKSINDTW 258

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ I  L+ QL +       +GR GG+EFA    G+    A    + + + +   
Sbjct: 259 GHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEFAVIMCGTPADSAITAMSRVHERLNTL 318

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++     P + + IS G+A    +       +  AD ALY AK +GRNR   
Sbjct: 319 RLP--GAPQVMLRISVGVAPLTPQIGHYREWLKSADMALYKAKNAGRNRTEV 368


>gi|157369424|ref|YP_001477413.1| diguanylate cyclase [Serratia proteamaculans 568]
 gi|157321188|gb|ABV40285.1| diguanylate cyclase [Serratia proteamaculans 568]
          Length = 482

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 14/229 (6%)

Query: 46  ANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR 105
           AN+ L+         L+ ++   L + ++ +   +L   I+  + ++L     R+   + 
Sbjct: 252 ANLMLYETPNNHIAFLDTLMSARLGIAMLVMGPLILASSIA--VNRKLL---RRLEHSAN 306

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+G+L  +A        +       E +S++  DID+FKQIND  GH VGD+V+A  
Sbjct: 307 HDFLTGVLARNALTRKAGELLEHKHKSKEAVSLLLIDIDHFKQINDTHGHLVGDQVLASF 366

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  +          GRLGGEEFA     +   +   LA  LR++++ + +  +    ++I
Sbjct: 367 AHIVRRELRHDQLFGRLGGEEFAIMLPRALAAQGVALAEHLRQLVQKADLLPTGKVPLNI 426

Query: 219 TISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           TIS G+A     E   +  ++  AD ALY AK  GRNRV  F+ +  N+
Sbjct: 427 TISVGVASLGMNEVKSLEQLMNMADIALYRAKSQGRNRVESFNAVSGNS 475


>gi|114047770|ref|YP_738320.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113889212|gb|ABI43263.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 341

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 6/177 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQ 141
           + + +  L     +  +    D L+G LN  AF +     L    E   ++F DID+FK 
Sbjct: 161 AQTEIDALKQKLEKTEKDVLYDALTGCLNRRAFDADIAGMLAQAPEGTCLIFVDIDHFKA 220

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            NDN+GH +GD+V+  ++ +L         + R GGEEFA     S  + A  LA  +R+
Sbjct: 221 FNDNYGHQLGDQVLKAVAKRLQEACRDGCKLYRFGGEEFAIVVPKSQLRIARQLAEAMRR 280

Query: 202 IIENSQI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +E   + +      I HIT S G+A+   K+ +  +I + D+ LY AK+ GRNRV+
Sbjct: 281 GLEKLSLKDRRKDQRIDHITASFGVAQWQEKQSVMQLIEKTDKLLYEAKRLGRNRVM 337


>gi|217969803|ref|YP_002355037.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
 gi|217507130|gb|ACK54141.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
          Length = 510

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 13/175 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQIN 143
           +L  +   +++L+R D L+GL N  A    L   + +         +++  DID FK IN
Sbjct: 333 DLARANEELARLARRDALTGLPNRLAVDERLHEESRRQPGPCGTGCAVLMIDIDSFKPIN 392

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD V+A ++  L        FV R GGEEF      ++ + A  +A  LR ++
Sbjct: 393 DTYGHATGDAVLALVAGLLAATVREADFVSRYGGEEFLVLLPDTALEGARTVAEKLRTVV 452

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
             +   ++      ITIS G+A        ++T++ +AD ALY AK+SGRNR+V 
Sbjct: 453 AETAHPVAG----RITISIGLAMAAPGTGELATVVAQADAALYEAKRSGRNRLVI 503


>gi|168463374|ref|ZP_02697291.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195633743|gb|EDX52157.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 699

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 114/273 (41%), Gaps = 21/273 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIA--------NIFLFYIGLTPFYGL 61
           ++WL      E           ++   I IA + +          N  + + G+   +  
Sbjct: 156 ALWLTFRLRNEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLA 215

Query: 62  EYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
             + V  L+++ I++ +SL    +      +   L  +   ++QL+  D L+ L N    
Sbjct: 216 VLVSVVALTILGITLLVSLFDARLQARTVLLASSLAQANQELAQLALHDTLTRLPNRVLL 275

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L              +++F D+D FK +ND +GH +GDK++  ++ +L         
Sbjct: 276 EDRLEQAISKANREGTSFALLFMDLDGFKAVNDAYGHDIGDKLLVAVTHRLNQPLSGQFT 335

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF   A  S+  EAA LA+ L   I+           + +T+S GIA      
Sbjct: 336 LARIGGDEFVLLAEVSAPDEAASLASALVHSIDA--PFTIDPYELVVTLSVGIALYPLDG 393

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +    +++ AD A+Y  K +GRN    F    N
Sbjct: 394 KNERELMFNADAAMYHTKHTGRNGYHFFQPSMN 426


>gi|167625834|ref|YP_001676128.1| GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella halifaxensis HAW-EB4]
 gi|167355856|gb|ABZ78469.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           halifaxensis HAW-EB4]
          Length = 909

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 13/181 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--------EKLSIVFFDIDYFKQ 141
           + +      ++   ++ D L+GL N S F+  L            E+ +++F D+D FK 
Sbjct: 463 INQRKRIERQLVHDAKHDNLTGLPNRSMFMERLTQAIKHVRRHSLERFAVLFIDMDRFKL 522

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLR 200
           +ND  GH  GD+ +   + +L         + RLGG+EF       S +Q+A  +A  + 
Sbjct: 523 LNDTLGHLEGDRFLIETAKRLKQCIRNNDMLARLGGDEFVILLDSISGQQDAEDVAERV- 581

Query: 201 KIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + E S+    +      + S G+A       +   +I+  AD A+Y AK  G+     F
Sbjct: 582 -LAELSKPYQLANQQFKSSASIGLAMSGQSRSDTSESILRDADTAMYQAKSQGKGCYTIF 640

Query: 259 S 259
           +
Sbjct: 641 N 641


>gi|91778026|ref|YP_553234.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
 gi|91690686|gb|ABE33884.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
          Length = 689

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 104/222 (46%), Gaps = 12/222 (5%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           G+   +    +++   +++I+++ +S      +  ++  +     +I +L+ +D L+GL 
Sbjct: 210 GVNTTWLATSVILFTFAILIVTLILSRFDAR-TTFLVGAVSNLNGQIVRLATLDSLTGLP 268

Query: 114 NHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N +     +     +        +++F D+D FK IND+ GH  GD+V+   + +L++  
Sbjct: 269 NRATLTERIEHAIHRAQRQRSLCAVLFMDLDGFKTINDSLGHSAGDQVLTAFAQRLLLCV 328

Query: 167 GTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                V RLGG+EF   A    S ++A  LA  + + +       +    + +  S GIA
Sbjct: 329 RASDTVARLGGDEFVVLAEDLGSREDAGALAEGVLERMRMGM--WTDSQPLQVMPSIGIA 386

Query: 226 ERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              H  + + +++  AD A+Y AK++GR+    F    N   
Sbjct: 387 LFPHDGDTVDSLLKNADAAMYEAKRAGRSTYRFFERSMNEAA 428


>gi|144898130|emb|CAM74994.1| sensory box/GGDEF domain protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 522

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 11/200 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------ 122
           LSL++   T + ++  ++   + +   +   + +L+  D L+ L N ++    L      
Sbjct: 318 LSLILHQET-TPVIAILTVEDVTQRRRAEQTLHRLAFKDMLTDLPNRTSLNEELVAAWTE 376

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             + N   +++  D+D FK IND +GH  GD V+  +  +L  V       GR+GG+EF 
Sbjct: 377 WQNLNTPFAVIALDLDGFKPINDTYGHDAGDAVLRAVGQRLQAVNRHNDVAGRMGGDEFL 436

Query: 182 AAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIY 238
               G  + ++A  +   + + +    +   SG  + +  SAGIA      P  +  +  
Sbjct: 437 IILRGCKTAEQALAIGLRVVENLGQEVVLEGSGAVLRVGASAGIAHSAETGPRSLEDMTK 496

Query: 239 RADQALYVAKKSGRNRVVCF 258
           +ADQALY AK++G+N+   F
Sbjct: 497 QADQALYAAKRAGKNQAALF 516


>gi|145298252|ref|YP_001141093.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851024|gb|ABO89345.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 380

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 113/227 (49%), Gaps = 14/227 (6%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
           F+  ++    F   + L ++     YGL   +V++L L+   +  +     ++ +  + L
Sbjct: 164 FYGRWVQPGAFYRPLLLSWL----VYGLLLFMVQHL-LMRDRLRKAREARQVAEARSQSL 218

Query: 94  FISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
                R  + +R D L+G LN    +  ++ LG     LS ++ DID+FK +ND  GHPV
Sbjct: 219 CEQTLRTEEEARYDPLTGALNRFGGNKLLAELGDM--PLSFIYIDIDHFKLVNDGHGHPV 276

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  +  +++    +   + R GGEEF    L   +  A  LA  LR  +       
Sbjct: 277 GDEVLKHMVSEVLRHCDSLCRLVRWGGEEFVLVCLHYEQARAKALAERLRAALVAYPHWP 336

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +   + IT S G+AER   +P+  ++ RAD+ALY AKK GRNRV  
Sbjct: 337 LA---LSITASFGVAERR-GDPLEQVLKRADEALYQAKKRGRNRVEV 379


>gi|119485560|ref|ZP_01619835.1| response regulator receiver domain protein (CheY-like) [Lyngbya sp.
           PCC 8106]
 gi|119456885|gb|EAW38012.1| response regulator receiver domain protein (CheY-like) [Lyngbya sp.
           PCC 8106]
          Length = 501

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 60/234 (25%), Positives = 105/234 (44%), Gaps = 16/234 (6%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE-LF 94
           + F   +I   N+    +    F+  E IL     + ++S   + L   +     +E L 
Sbjct: 269 AAFAVPMILSNNVLAVLV----FFKKEAILANPHIIKLVSGVAAQLGALVLHKKAEEALR 324

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFG 147
            +Y  + +L++ID L+ + N   F   L    ++L+       ++  D+D FK  ND +G
Sbjct: 325 TAYIELERLAKIDGLTQIANRRYFDEYLEREWKRLAREKQFLSLILCDVDCFKLYNDFYG 384

Query: 148 HPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           HP GD  +  ++  +      P   V R GGEEF      ++      +AN +R+ ++  
Sbjct: 385 HPSGDYCLKEIAQAISRTARRPADLVARYGGEEFVIVLPNTTLIGGLKVANLIRQEVKKL 444

Query: 207 QINISSG-PSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVC 257
           +I  +       +T+S G++       +S  T+I  AD+ALY AK  GRN  V 
Sbjct: 445 KILHAKSIVDSSVTVSLGVSTTIPHLELSPKTLIRVADEALYKAKNKGRNCAVA 498


>gi|186477632|ref|YP_001859102.1| diguanylate cyclase [Burkholderia phymatum STM815]
 gi|184194091|gb|ACC72056.1| diguanylate cyclase [Burkholderia phymatum STM815]
          Length = 316

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 99/209 (47%), Gaps = 12/209 (5%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           ++ +   L+EN  +V+    IS L       I      ++ R  Q +R D L+GL N   
Sbjct: 109 WFWMTESLLENDWIVLTGTEISALRSNEQAWI-----GAHERAVQEARTDALTGLANRRH 163

Query: 118 FISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
            +SSL             L++   D+D+FKQIND+ GH  GD V+    +          
Sbjct: 164 SMSSLELAITAAAGTETPLTVALVDLDHFKQINDSHGHAAGDAVLRDFGEVCRHATRQTD 223

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
             GR+GGEEF      +S +        +R+ + + ++ ++   +I  + SAG+      
Sbjct: 224 IAGRIGGEEFLVVFPSTSVEHGVSAVERMRRQVLSRRVQVADDRAIRYSFSAGVCRVELS 283

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + ++T + RAD ALY AK+ GRNR V +S
Sbjct: 284 DDLNTTLARADSALYSAKREGRNRTVAWS 312


>gi|84387541|ref|ZP_00990559.1| GGDEF family protein [Vibrio splendidus 12B01]
 gi|84377589|gb|EAP94454.1| GGDEF family protein [Vibrio splendidus 12B01]
          Length = 338

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 89/176 (50%), Gaps = 5/176 (2%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQI 142
           + S + +L      + + +  D  + L N  +F   I +L    E L ++  DID+FK  
Sbjct: 161 ATSEISKLKTQLVEVQKDALFDSTTTLYNRRSFDRDIETLCEAKESLCLILLDIDHFKNF 220

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD V+  ++ +L +     +   R GGEEFA      S + A  LA+  R+ 
Sbjct: 221 NDTYGHLFGDMVLKGIARKLKLSCREGISAYRFGGEEFALIVPNKSLRIARQLADTNRRS 280

Query: 203 IENSQI-NISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +E   I +  SG  +  IT S G+AE    E   ++I RAD+ LY AK  GRNRV+
Sbjct: 281 LEKLSIKDRRSGQQVGSITASFGVAELEPGESAQSLIERADKLLYEAKSLGRNRVM 336


>gi|330875076|gb|EGH09225.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 703

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 97/214 (45%), Gaps = 13/214 (6%)

Query: 64  ILVENLSLVIISITISLLLGYI---SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +LV +LS++ I++   +L  ++   +  +   L  + + ++  +  D L+GL N +    
Sbjct: 220 VLVASLSVLSITLFCCILDSHLETRTAVLANSLVEANHELTHRALHDSLTGLPNRTLLTD 279

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            +     K        +++F D+D FK +ND FGH  GD ++  ++ +L         + 
Sbjct: 280 RIEQTMNKVRENGGCFALMFMDLDGFKPVNDAFGHHTGDLLLRHVALRLRQNLHLHDTLA 339

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           R+GG+EF        +Q+A  +A  +R++ E           + I++S GI     +   
Sbjct: 340 RVGGDEFVLLVELQDQQDALAVA--MRQVNEIGNPFTIGEHQLQISLSIGICMYPGNGTT 397

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              ++  AD A+Y  K +G+N    F    N+  
Sbjct: 398 QHELLVNADAAMYHTKAAGKNGYSFFDVSMNSNA 431


>gi|238794811|ref|ZP_04638413.1| Diguanylate cyclase [Yersinia intermedia ATCC 29909]
 gi|238725891|gb|EEQ17443.1| Diguanylate cyclase [Yersinia intermedia ATCC 29909]
          Length = 395

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 95/177 (53%), Gaps = 16/177 (9%)

Query: 89  ILKELFISYNRISQ----LSR---IDCLSGLLNHSAFISSLGS------YNEKLSIVFFD 135
           +L+EL +  + ++Q    L+     D L+GL N + F   L         +E+L+++F D
Sbjct: 200 LLEELEVWQDHLTQENDFLAHRAAHDSLTGLANRAFFEGRLSRTLSDCAADEQLAVLFID 259

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAI 194
            D+FK+INDN+GH  GD V+  ++D++  +      V RLGG+EFA       +  +   
Sbjct: 260 GDHFKEINDNYGHAAGDLVLTAIADRIRSLLRETDLVARLGGDEFAVLLAPIHNTDDVLT 319

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
           +AN +   + N  I++  G  I  +IS GIA    H +    ++ RAD+A+Y AKKS
Sbjct: 320 IANKIIDSM-NQPIDLVDGSEITTSISIGIAIYPDHAQTPEDLLQRADEAMYQAKKS 375


>gi|228973515|ref|ZP_04134099.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228980073|ref|ZP_04140389.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407]
 gi|228779659|gb|EEM27910.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407]
 gi|228786210|gb|EEM34205.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
          Length = 785

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 96/205 (46%), Gaps = 10/205 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           IL   +++V I I       Y+    +  +    + I+ L+  D ++ + N   F   L 
Sbjct: 318 ILFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELD 377

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     +K  +++ D++ FK IND  GH +GD+V+  ++ +        + + R+G
Sbjct: 378 RSIKRAQKTQDKFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPTIPLARIG 437

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           G+EFA      +EQ+   L   L +I E  +  + +  S ++++S GIA         +T
Sbjct: 438 GDEFAIIVHNQTEQQLLDLCKTLFRITE--EPFVVNQHSFYLSLSIGIAVYPFGGINTTT 495

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++  AD A+Y AK+ G N V  + +
Sbjct: 496 LLQHADIAMYSAKEKGNNAVCMYDE 520


>gi|205357301|ref|ZP_02346653.2| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205322530|gb|EDZ10369.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 691

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 114/273 (41%), Gaps = 21/273 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIA--------NIFLFYIGLTPFYGL 61
           ++WL      E           ++   I IA + +          N  + + G+   +  
Sbjct: 156 ALWLTFRLRHEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLA 215

Query: 62  EYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
             + V  L+++ I++ +SL    +      +   L  +   ++QL+  D L+ L N    
Sbjct: 216 VLVSVVALTILGITLLVSLFDARLQARTALLASSLAQANQELAQLALHDTLTRLPNRVLL 275

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L              +++F D+D FK +ND +GH +GDK++  ++ +L         
Sbjct: 276 EDRLEQAISKANREGSSFALLFMDLDGFKAVNDAYGHDIGDKLLVAVTHRLNQPLSGQFT 335

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF   A  S+  EAA LA+ L   I+           + +T+S GIA      
Sbjct: 336 LARIGGDEFVLLAEVSAPDEAASLASALVHSIDA--PFTIDPYELVVTLSVGIALYPLDG 393

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +    +++ AD A+Y  K +GRN    F    N
Sbjct: 394 KNERELMFNADAAMYHTKHTGRNGYHFFQPSMN 426


>gi|126665574|ref|ZP_01736556.1| sensory box/GGDEF/GAF/EAL domain protein [Marinobacter sp. ELB17]
 gi|126630202|gb|EBA00818.1| sensory box/GGDEF/GAF/EAL domain protein [Marinobacter sp. ELB17]
          Length = 806

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 77/181 (42%), Gaps = 15/181 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHS----AFISSL---GSYNEKLSIVFFDIDYFK 140
            + +E       + Q +  D L+GL N       F   L         LSI F D+D FK
Sbjct: 355 RMYQERQEHQKGLEQAANFDSLTGLPNRRRLTELFEQELTFADQRQSALSICFIDLDGFK 414

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDL 199
            IND++GH VGD V+  ++ +L  V      + RLGG+EF A             +   +
Sbjct: 415 GINDDYGHSVGDAVLKTVAARLQHVLRECDIIARLGGDEFVAIIRDVENNAVYERMLEAI 474

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCF 258
           R+ I +  + +       +  S G+            ++  ADQA+Y AK +GRNR   F
Sbjct: 475 RRPISHQDLTLD------LAASMGVTLYPRDPSAPDLLLRHADQAMYAAKDAGRNRYSIF 528

Query: 259 S 259
            
Sbjct: 529 D 529


>gi|121595554|ref|YP_987450.1| response regulator receiver modulated diguanylate cyclase
           [Acidovorax sp. JS42]
 gi|120607634|gb|ABM43374.1| response regulator receiver modulated diguanylate cyclase
           [Acidovorax sp. JS42]
          Length = 341

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 12/188 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           + +EL ++   ++++  +D L+GL+N   F   L             L+++  D+D+FK+
Sbjct: 149 LTEELHVANQHLNEMVEMDPLTGLVNRRGFDRILHSEILAARRDGVPLTLMLCDLDHFKR 208

Query: 142 INDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND  GH  GD  +  +   L            R GGEEFA     +    A   A  L 
Sbjct: 209 YNDTLGHVQGDACLKEVGRVLHDVCMRPRDVASRYGGEEFALILPNTPRSGAMTFARALG 268

Query: 201 KIIENSQINISSGPSI-HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           K++++  I     P+   +T+S GI            T++ RAD+ALY AK  GR+R   
Sbjct: 269 KLLKSRAIAHPGSPNGETLTLSGGITTCVPDDGTSAETMLMRADEALYAAKAQGRDRFFS 328

Query: 258 FSDIENNT 265
           F +++ +T
Sbjct: 329 F-EMQMDT 335


>gi|134288328|ref|YP_001110491.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia vietnamiensis G4]
 gi|134132978|gb|ABO59688.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia vietnamiensis G4]
          Length = 884

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 80/185 (43%), Gaps = 11/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
             +        ++ + +  D ++GL N   +I  L +   +        +++F D+D+FK
Sbjct: 443 RDVTTRRQYEAQLVKQATFDEITGLPNRRLYIDRLSNALHRSKRDGTGCAVMFIDLDHFK 502

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           ++ND  GHP GD+++   + +L  +      V R GG+EF       +   E  I+A  +
Sbjct: 503 RVNDTLGHPFGDQLLIAAAQRLSGLLRPGDTVARFGGDEFVLLMSDFTDPMECRIVAEGI 562

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
            +          +  SI +  S G++           ++  AD A+Y AK +GR+    F
Sbjct: 563 VEAFAA--PFEVAARSISVGASVGVSVFPGDGTEPDILLQHADTAMYEAKSAGRSGFCFF 620

Query: 259 SDIEN 263
           +   N
Sbjct: 621 NHDMN 625


>gi|307294787|ref|ZP_07574629.1| diguanylate cyclase [Sphingobium chlorophenolicum L-1]
 gi|306879261|gb|EFN10479.1| diguanylate cyclase [Sphingobium chlorophenolicum L-1]
          Length = 354

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 57/186 (30%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 87  GSILKELFISY-NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
                +L  S      + +  D L+GL N  AF       +       + L++ F DID+
Sbjct: 169 NQKQTQLLKSNLESARRAAEHDHLTGLPNRRAFEGTLREELERAHKEGQSLAVAFCDIDH 228

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND  GH  GD+V+ F++  L         V R GGEEF     G +  EA    + 
Sbjct: 229 FKLINDTHGHDTGDRVLKFVAGLLAKASNDQCHVARHGGEEFVMLFRGKTAAEACEAVDS 288

Query: 199 LRKIIE-NSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +R+ +   S +N ++G  +  ++ SAG+A     E     +  AD+ALY+AK+ GRNRV 
Sbjct: 289 VRQDLSTRSLVNRANGERMERVSFSAGVANVLAYEDPRAALKAADRALYLAKEHGRNRVY 348

Query: 257 CFSDIE 262
             ++++
Sbjct: 349 LAAELD 354


>gi|299532454|ref|ZP_07045845.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298719539|gb|EFI60505.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 400

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 64/263 (24%), Positives = 115/263 (43%), Gaps = 22/263 (8%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFI----ATVIFIANIFLFYIGLTPFY 59
           SL   L I   H K          +++ SI F+ +     A +  +    L  +  +P++
Sbjct: 130 SLVLLLPILQVHSKKNSFDWLDKSLLWLSILFTAYTFTRPALIWLLGYTDLRALPRSPYW 189

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
            L  + + N SL+   +  ++ +    G + KE  I           D L+ +LN  +F 
Sbjct: 190 ILTLLSILNFSLLFTVVMAAIAVKETVGKLRKERDI-----------DALTQILNRRSFH 238

Query: 120 SSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
                         ++++  DID+FK+IND +GH  GD V+  ++  L         V R
Sbjct: 239 EHAQKRLADMRRYPMAVLACDIDHFKRINDTWGHERGDMVLQLVASTLQNNVREHDLVAR 298

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
            GGEEF       + ++A ++A  +++ + +    + +GP   +T+S GI+         
Sbjct: 299 FGGEEFVLLLADITLEDAELIAQRIQRDLGSRNTVLPTGP--KLTMSFGISLITRSFQFE 356

Query: 235 TIIYRADQALYVAKKSGRNRVVC 257
             +  AD+ LY AK +GR+RV  
Sbjct: 357 QAMKEADRLLYQAKNAGRDRVHV 379


>gi|228940595|ref|ZP_04103161.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228819101|gb|EEM65160.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 801

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 96/205 (46%), Gaps = 10/205 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           IL   +++V I I       Y+    +  +    + I+ L+  D ++ + N   F   L 
Sbjct: 334 ILFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELD 393

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     +K  +++ D++ FK IND  GH +GD+V+  ++ +        + + R+G
Sbjct: 394 RSIKRAQKTQDKFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPTIPLARIG 453

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           G+EFA      +EQ+   L   L +I E  +  + +  S ++++S GIA         +T
Sbjct: 454 GDEFAIIVHNQTEQQLLDLCKTLFRITE--EPFVVNQHSFYLSLSIGIAVYPFGGINTTT 511

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++  AD A+Y AK+ G N V  + +
Sbjct: 512 LLQHADIAMYSAKEKGNNAVCMYDE 536


>gi|168822711|ref|ZP_02834711.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205340897|gb|EDZ27661.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320087836|emb|CBY97600.1| Uncharacterized signaling protein PA1727 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 691

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 114/273 (41%), Gaps = 21/273 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIA--------NIFLFYIGLTPFYGL 61
           ++WL      E           ++   I IA + +          N  + + G+   +  
Sbjct: 156 ALWLTFRLRNEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLA 215

Query: 62  EYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
             + V  L+++ I++ +SL    +      +   L  +   ++QL+  D L+ L N    
Sbjct: 216 VLVSVVALTILGITLLVSLFDARLQARTALLASSLAQANQELAQLALHDTLTRLPNRVLL 275

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L              +++F D+D FK +ND +GH +GDK++  ++ +L         
Sbjct: 276 EDRLEQAISKANREGSSFALLFMDLDGFKAVNDAYGHDIGDKLLVAVTHRLNQPLSGQFT 335

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF   A  S+  EAA LA+ L   I+           + +T+S GIA      
Sbjct: 336 LARIGGDEFVLLAEVSAPDEAASLASALVHSIDA--PFTIDPYELVVTLSVGIALYPLDG 393

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +    +++ AD A+Y  K +GRN    F    N
Sbjct: 394 KNERELMFNADAAMYHTKHTGRNGYHFFQPSMN 426


>gi|120611176|ref|YP_970854.1| PAS/PAC sensor-containing diguanylate cyclase [Acidovorax citrulli
           AAC00-1]
 gi|120589640|gb|ABM33080.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax citrulli
           AAC00-1]
          Length = 359

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 79/183 (43%), Gaps = 11/183 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           +  + + ++      +  ++  D L+GL N       L           + L++ + D+D
Sbjct: 163 VVITDISQIKAHEQELQHIALYDSLTGLPNRRLLADRLVQGIAQAQRRRQLLAVCYLDLD 222

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA 196
            FK++ND  GH  GD+++  +  ++         + RLGG+E      G  + ++   L 
Sbjct: 223 GFKRVNDQHGHAAGDQLLVEVGRRIQAQLRAEDTLARLGGDEMVVLINGLQAPEDCTPLI 282

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
           + +   +    + +  G    ++ S G++      +    ++ +AD A+Y AK+ G+N  
Sbjct: 283 DRILHAVRQ-PVPLPKGQGF-VSASMGLSFYPTDGDTPDLLLRQADHAMYEAKQDGKNHC 340

Query: 256 VCF 258
             F
Sbjct: 341 RHF 343


>gi|152995887|ref|YP_001340722.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150836811|gb|ABR70787.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 368

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 73/268 (27%), Positives = 117/268 (43%), Gaps = 18/268 (6%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIF-IATVIFIANIFLFYIGLTPFYGLEYILVE 67
           L  +L     + S  P    +  SI F+   +   I     F+F + +  F+  + +L+ 
Sbjct: 99  LCFYLVCAGGVNSSGPLWIYVIPSITFAFLGLKQGIIANAAFIFIVSIMLFFPNDQMLLT 158

Query: 68  NLS------LVIISITISLLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAF 118
             S      L+ + +TI  L G    +  +    L    ++    ++ D L+ L N    
Sbjct: 159 TYSYEFKTRLIYVFLTIVTLSGLYEVARYRSFMRLKTMKDKYEYQAQFDYLTFLPNRRGI 218

Query: 119 ------ISSLGSYNEKLS-IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                       +  K+S I   DID FK IND FGH VGD V+   S  L     +   
Sbjct: 219 QKILNKDQRQRKHTHKVSTIAILDIDKFKVINDEFGHEVGDMVLKHTSRVLRDCIRSQDS 278

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
           + R GGEEF      ++EQEA +L   +R+ +E +     +  SI IT+S G+ E     
Sbjct: 279 LARWGGEEFLLLLPETTEQEALVLLESIRECVEETPFGHGN-ISIFITLSVGLCETSPDV 337

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
             +  I  +D +LY AK++GRN V  ++
Sbjct: 338 DFNETIKFSDVSLYRAKQAGRNTVFAYT 365


>gi|239944494|ref|ZP_04696431.1| putative integral membrane phosphodiesterase [Streptomyces
           roseosporus NRRL 15998]
          Length = 940

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 16/194 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKL-----SIVFFDI 136
            ++   + E      ++   +  D L+ L N + F + +       +      +++F D+
Sbjct: 456 LLNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTARVRQALGGRRAGDLGTAVLFIDL 515

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-------E 189
           D FKQ+ND  GH  GD+++     +L           RLGG+EFAA  +G         E
Sbjct: 516 DGFKQVNDTIGHQAGDELLIQAGRRLQESVRAGDTAARLGGDEFAALIMGDGTRDQGARE 575

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            +   +A+ LR  +  SQ        + +  S G+A        + ++  AD A+Y AK 
Sbjct: 576 YQVHEIADRLRLTL--SQPYRIGASEVRVAASIGVAFAEPAITPTDLMRNADLAMYRAKA 633

Query: 250 SGRNRVVCFSDIEN 263
            G++RV  ++    
Sbjct: 634 GGKDRVELYAPQMQ 647


>gi|197248236|ref|YP_002148312.1| ggdef domain/eal domain-containing protein [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197211939|gb|ACH49336.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 691

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 114/273 (41%), Gaps = 21/273 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIA--------NIFLFYIGLTPFYGL 61
           ++WL      E           ++   I IA + +          N  + + G+   +  
Sbjct: 156 ALWLTFRLRNEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLA 215

Query: 62  EYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
             + V  L+++ I++ +SL    +      +   L  +   ++QL+  D L+ L N    
Sbjct: 216 VLVSVVALTILGITLLVSLFDARLQARTALLASSLAQANQELAQLALHDTLTRLPNRVLL 275

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L              +++F D+D FK +ND +GH +GDK++  ++ +L         
Sbjct: 276 EDRLEQAISKANREGSSFALLFMDLDGFKAVNDAYGHDIGDKLLVAVTHRLNQPLSGQFT 335

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF   A  S+  EAA LA+ L   I+           + +T+S GIA      
Sbjct: 336 LARIGGDEFVLLAEVSAPDEAASLASALVHSIDA--PFTIDPYELVVTLSVGIALYPLDG 393

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +    +++ AD A+Y  K +GRN    F    N
Sbjct: 394 KNERELMFNADAAMYHTKHTGRNGYHFFQPSMN 426


>gi|197118504|ref|YP_002138931.1| response receiver sensor diguanylate cyclase/phosphodiesterase
           [Geobacter bemidjiensis Bem]
 gi|197087864|gb|ACH39135.1| response receiver sensor diguanylate cyclase/phosphodiesterase,
           PAS, PAS and PAS domain-containing protein [Geobacter
           bemidjiensis Bem]
          Length = 953

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 79/182 (43%), Gaps = 11/182 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
              + E       I   ++ D L+ L N   F       ++      + L+++F D+D F
Sbjct: 506 ARDVTERTRMEEIIKHQAQHDTLTDLPNRKLFGDFLNLELAQARRNRKSLAVLFMDLDRF 565

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198
           KQ+ND  GH  GD+++  ++ +L         V R+ G+EF       ++  +  I+   
Sbjct: 566 KQVNDTLGHAAGDRLLQAVAQRLKRCVRESDTVARISGDEFNVLMPDLAQTDDVGIVVGK 625

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           +  +       +  G  + +T S G++      +    ++ +AD A+YVAK++  N    
Sbjct: 626 IMGVFRT--PFVLEGAELKVTTSVGVSMFPDDGDSAQELLQKADGAMYVAKQTPGNSYQF 683

Query: 258 FS 259
           ++
Sbjct: 684 YN 685


>gi|326388698|ref|ZP_08210291.1| diguanylate cyclase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206949|gb|EGD57773.1| diguanylate cyclase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 590

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 9/183 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQIN 143
            +    ++  R+ +L+  D L+GL N   F+ +L S  +  +     +   DID FK +N
Sbjct: 144 DITPQKVAEERLWKLANTDPLTGLPNRRRFLENLQSLTDTGAENGIILGLMDIDNFKGLN 203

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH VGD V+  +++++         V RLGG+EFA      +    A     + +I 
Sbjct: 204 DSLGHTVGDHVLQHVANRIRETLEAEDIVARLGGDEFALILRHCASNTEAE--ERIARIE 261

Query: 204 ENSQINISSGP-SIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +     I  G  S  ++ S G+          + ++  AD ALY AK +GRNR   F+D 
Sbjct: 262 DALSELIPLGRDSRRVSASLGLTRFPEGGATANELMKHADIALYKAKANGRNRTEFFTDS 321

Query: 262 ENN 264
              
Sbjct: 322 MRE 324


>gi|323499007|ref|ZP_08103989.1| hypothetical protein VISI1226_21249 [Vibrio sinaloensis DSM 21326]
 gi|323315943|gb|EGA68972.1| hypothetical protein VISI1226_21249 [Vibrio sinaloensis DSM 21326]
          Length = 656

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 10/171 (5%)

Query: 95  ISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE---KLSIVFFDIDYFKQINDNFG 147
               R+  L+  D L+GL N           L    E    L++++ D+D FK +ND +G
Sbjct: 484 KEMERLEYLAHHDSLTGLANRAHLYRVLDECLKDEREVKNGLALLYLDLDGFKLVNDTYG 543

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+V+  +S++L+    +   V RL G+EF      + +   +ILA+ L  +I+   
Sbjct: 544 HDAGDEVLKQVSERLLSQVRSQDLVARLSGDEFVVLLTSTDKASISILADRLIGLIQQDI 603

Query: 208 INISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
             +  G  +++  S G+     +   +  ++  AD A+Y AK  G+ + V 
Sbjct: 604 --VYRGRILNVGASIGVHYIEQRNVSMDQLLRAADTAMYKAKSLGKGQFVL 652


>gi|260551034|ref|ZP_05825239.1| response regulator [Acinetobacter sp. RUH2624]
 gi|260405982|gb|EEW99469.1| response regulator [Acinetobacter sp. RUH2624]
          Length = 473

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 113/248 (45%), Gaps = 17/248 (6%)

Query: 22  FSPHTFMIYFSIFFSIFIATVI--FIANIFLFYI--GLTPFYGLEYIL-VENLSLVIISI 76
             P   +I+ +I +   I  +I  F +   ++++       Y  +Y+    ++ + +I +
Sbjct: 225 LYPIAALIWCAIRYKPIIVALITSFTSAYIIYHVSGHYLLLYPQDYLSNTISIRIGLIMM 284

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------- 129
           TI+ L      ++  EL     ++      D L+  L    F+ S+    EK+       
Sbjct: 285 TIAPLTVSSISALHSELI---QKLQHAIAHDELTSSLTRRQFLQSVRLLQEKVQKEHKTS 341

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +    D+D+FK++ND++GH +GD+ +      +  +      +GR GGEEFA     +++
Sbjct: 342 AFFMLDVDHFKKVNDSYGHLIGDRALQTCVTTIQNILHPHDLLGRFGGEEFAIFIPDTTK 401

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVA 247
           + A  LA  +R  I    I +     I + +S GI+         I ++   AD ALY A
Sbjct: 402 EAAFELAERIRIKISQQPIYVYGKLPIFVQVSIGISLYSPNYHRSIESLFKEADDALYQA 461

Query: 248 KKSGRNRV 255
           K+ GRNRV
Sbjct: 462 KRQGRNRV 469


>gi|257094919|ref|YP_003168560.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257047443|gb|ACV36631.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 530

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 12/168 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
              ++QL+++D L+GL N  +    L          +   +++F DID+FK+IND +GH 
Sbjct: 365 NRELAQLAQVDALTGLQNRKSANERLRLEFLRLQRSSNPYAVLFMDIDFFKEINDTYGHE 424

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+  ++  L        FV R GGEEF A    ++ + A  +A  +R  +      
Sbjct: 425 TGDQVLRHMATVLTASLRQTDFVARYGGEEFLAILSETNAEGALTIAEIVRSSVAQQAFP 484

Query: 210 ISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +      +T+S G+A      +   + + RAD ALY AK+ GRN V 
Sbjct: 485 GAR----QVTLSIGVAMALGEDKDEESAVRRADTALYRAKEDGRNAVR 528


>gi|229587761|ref|YP_002869880.1| putative sensory box GGDEF/EAL domain-containing protein
           [Pseudomonas fluorescens SBW25]
 gi|229359627|emb|CAY46469.1| putative sensory box GGDEF/EAL domains protein [Pseudomonas
           fluorescens SBW25]
          Length = 662

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 52/208 (25%), Positives = 102/208 (49%), Gaps = 12/208 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  +  ++ +I   +  +  Y++  S +  +  S + ++ L+  D L+ L N   F    
Sbjct: 193 IYPQWQTIRVIHDDLGQVSHYVAVFSDISAIKDSEHELAHLAHHDPLTDLPNRLLFTDRA 252

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                    +    +++  D+D+FK IND+ GH VGD+++  + ++L  +FG  + + RL
Sbjct: 253 QQALASAQVHKRGCALLLLDLDHFKIINDSLGHNVGDQLLKLVGERLKALFGPGVTLARL 312

Query: 176 GGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PI 233
           GG+EFA  A    +  +AA LA  + + ++  Q  +  G  + I+ S GI+   +     
Sbjct: 313 GGDEFAVLAESCPQVAQAASLAQRMLEAMK--QPFLFDGHQLFISASIGISLFPNDALSA 370

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDI 261
             ++  AD AL+ AK +GR     +++ 
Sbjct: 371 EQLLRNADSALFKAKSTGREGYALYTEE 398


>gi|313632317|gb|EFR99362.1| ggdef domain-containing protein [Listeria seeligeri FSL N1-067]
          Length = 175

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 82/172 (47%), Gaps = 5/172 (2%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG----SYNEKLSIVFFDIDYFKQINDNFGHP 149
              + +  Q S +D L+ L N   F   +         +++++  DID+FK IND +GH 
Sbjct: 3   KQLFQKYEQDSTLDYLTQLSNVRQFDEKINHVVDKSGRQVALLLIDIDFFKNINDTYGHD 62

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD ++  L+  L           R GGEEF+   L  S +E    A  +RK  E     
Sbjct: 63  AGDAILKQLAFILKESTTDGSEAFRNGGEEFSLILLDCSVEEGNYFAEHIRKETEEHHFL 122

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           I SG ++ ITIS G++   ++      +   AD+ALY AK +GRNRV    +
Sbjct: 123 IPSGQTVKITISIGVSGSHNEVTTSERLFKSADEALYKAKLTGRNRVCIADE 174


>gi|313673240|ref|YP_004051351.1| response regulator receiver modulated diguanylate cyclase
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939996|gb|ADR19188.1| response regulator receiver modulated diguanylate cyclase
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 428

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 86/174 (49%), Gaps = 10/174 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
           ++  L      ++  S  D L+ L N   F  ++   +++        SI+  DID+FK+
Sbjct: 255 LIDMLDAKNKLLTISSITDDLTKLYNRRFFWETIEKEHKRHNRINSEYSIIMLDIDHFKK 314

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           INDNFGH  GD V++ ++  L         V R GGEEF      + ++ A ++AN +  
Sbjct: 315 INDNFGHGTGDLVLSDVAFSLKNSVRNTDIVARYGGEEFIVLLPDTKKENAIVVANKILN 374

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I    ++  S P   IT+S G+A     +    II  AD+ LY AK +GRNR+
Sbjct: 375 SIREIPVHFRSEP---ITVSIGLASSREGDNYEKIISLADERLYKAKNNGRNRI 425


>gi|207727958|ref|YP_002256352.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
 gi|206591201|emb|CAQ56813.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
          Length = 701

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 63/281 (22%), Positives = 114/281 (40%), Gaps = 25/281 (8%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY- 63
           L    ++W+      +S          ++   + I  + +       +  L  F G    
Sbjct: 151 LASGAALWIAFRLRRQSRRVRAMRAGAAVVMGLAIVGMHYTGMAAAGF-PLGSFCGAARG 209

Query: 64  -ILVENLSLVIISITISLLLGYISGSIL------------KELFISYNRISQLSRIDCLS 110
            + VE L+LVII +T+++L   +  S+L              L  +   ++ L+  D L+
Sbjct: 210 GVSVEWLALVIIVVTLAVLAMALVISVLDLRMEARTAVLATSLAKANKELAYLALHDSLT 269

Query: 111 GLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            L N       L              +++F D+D FK +ND +GH  GD ++A ++ ++V
Sbjct: 270 KLSNRLLLEDRLEQAIRSAGRNRGSFALMFLDLDGFKAVNDVYGHHAGDLLLADVARRIV 329

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   V R+GG+EF   A      +A  LA+    +    +  +  G ++ ++ S G
Sbjct: 330 ACVRLQDTVARVGGDEFVVLASVGEPADAGTLADA--LLAAAREPFLVDGHALQVSTSIG 387

Query: 224 IAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           IA           ++  AD A+Y AK +GR+    F    N
Sbjct: 388 IALYPGDGASQHDLLTNADAAMYHAKGTGRDTYCFFEASMN 428


>gi|146306012|ref|YP_001186477.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas mendocina ymp]
 gi|145574213|gb|ABP83745.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas mendocina ymp]
          Length = 657

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 81/180 (45%), Gaps = 10/180 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             + E       +  L+  D L+ L N  AF   L        +    L++ F D+D+FK
Sbjct: 472 RDISERAAHQRHLHDLAYRDPLTSLGNRKAFHEQLQGDLQQTLNEGSVLALFFIDLDHFK 531

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND +GH  GD ++  ++ +L      P  + RLGG+EF      ++ + A  L   L 
Sbjct: 532 QVNDQYGHDAGDALLCAIAARLQHGLRQPGKLYRLGGDEFTLLMPQATAEAARALGERLL 591

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +  +   I+      +T S GIA    H      +I  AD A+Y AK+  RN+VV F 
Sbjct: 592 GSL-GAPFEIAGHSIDFVTPSVGIALCPQHATASEALIKAADSAMYQAKRK-RNQVVIFE 649


>gi|111223426|ref|YP_714220.1| putative two component sensor serine/threonine kinase [Frankia alni
            ACN14a]
 gi|111150958|emb|CAJ62664.1| Putative two component sensor serine/threonine kinase [Frankia alni
            ACN14a]
          Length = 1826

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 105/223 (47%), Gaps = 21/223 (9%)

Query: 54   GLTPFYGLEYILVENLSLVIISIT-----ISLLLGYISGSILKELFISYN------RISQ 102
            G   +      L E++ +V++  +      S     I+ +I+ ++ I Y       ++ +
Sbjct: 1603 GARSWLAAPVPLRESIEMVVVLASRTPDCYSETRIQIAQTIIDQVVIGYQNAWLFEKVQR 1662

Query: 103  LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            L+  D L+GL +   F+           +    +     DID+FK++ND +GH VGD+V+
Sbjct: 1663 LAATDQLTGLASRRHFLERADHLYAAQAAAGRPVCAAMVDIDHFKRVNDAYGHLVGDEVL 1722

Query: 156  AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              ++ ++   F     +GR+GGEEFA    G     A  L   LR  +    I+ S+GP 
Sbjct: 1723 TEVARRIRRAFRDDDLIGRIGGEEFAVLMSG-PVTTAESLGQRLRNALARDPIDTSAGP- 1780

Query: 216  IHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + I +S G+ A       +  ++ RAD ALY AK  GR+RV  
Sbjct: 1781 LDIRLSVGLTARSPADGSLRDLLARADAALYEAKHGGRDRVAV 1823


>gi|121596403|ref|YP_988299.1| diguanylate cyclase [Acidovorax sp. JS42]
 gi|120608483|gb|ABM44223.1| diguanylate cyclase [Acidovorax sp. JS42]
          Length = 395

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 113/258 (43%), Gaps = 20/258 (7%)

Query: 9   LSIW-LCHEKNLESFSPHTFM-IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILV 66
           + +W L  E+   S    T + +   +   +     +  A   +   GL     ++ I  
Sbjct: 130 MVLWSLWRERPAASLRGATLLSVGLVMEVLLLGVRGMLAATRDIPVEGLMQGNAMQSITF 189

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-- 124
               +V+I  ++  +L      + K+   + NR    +  D L+GL+N  + I +L    
Sbjct: 190 MAAFVVVILSSLGFIL------MGKDRSDADNR--YFAAHDALTGLVNRRSLIMALERDV 241

Query: 125 -----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                  E  +++  DID+FK +ND+ GH  GD V+  ++D L         VGR GGEE
Sbjct: 242 ARAVRLREPYAVMLVDIDHFKFVNDSHGHLAGDSVLRHVADLLRTRLRAQDLVGRYGGEE 301

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTII 237
           F      +    A  LA  LR+ +E     +  G  I +T+S G+        +    ++
Sbjct: 302 FMVLLPHTPLGGALELAETLRRAVERLPC-VGGGKEIPVTVSIGVCGGPLQPADGWDRLV 360

Query: 238 YRADQALYVAKKSGRNRV 255
             AD+ALY AK +GRNRV
Sbjct: 361 QGADEALYAAKLAGRNRV 378


>gi|332525874|ref|ZP_08402015.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2]
 gi|332109425|gb|EGJ10348.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2]
          Length = 364

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 62/237 (26%), Positives = 99/237 (41%), Gaps = 19/237 (8%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL------LGYISGSILK---E 92
           ++ +  +       +P       LVE  S   ++ +++++      L  +   + +   E
Sbjct: 129 IVLMGGVMAALAAESP--QSHPALVEAASWAFLATSMTMMQVLSDRLSRLRSRLTRQKNE 186

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L  +  RI  L+  D L+GLLN  A +  L         +   L +   D+D FKQIND 
Sbjct: 187 LSQALERIRLLATRDTLTGLLNRRAAMDELRRAAGQAARHERPLVVALVDLDRFKQINDG 246

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD+V+   +D           V R GGEEF      +SE EA      +  +   
Sbjct: 247 HGHQTGDRVLQAFADVAQRELRAEDCVSRWGGEEFLFILPDTSEDEACACLERVLAVCAE 306

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             ++     +  I  SAG+A       +   I RAD+A+Y AK +GR R+      E
Sbjct: 307 IIVD-GLPTNWRIGFSAGVARCLGPADLEPAIERADRAMYRAKLAGRGRIHRAQPPE 362


>gi|254492281|ref|ZP_05105455.1| cyclic diguanylate phosphodiesterase domain protein [Methylophaga
           thiooxidans DMS010]
 gi|224462606|gb|EEF78881.1| cyclic diguanylate phosphodiesterase domain protein [Methylophaga
           thiooxydans DMS010]
          Length = 727

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 85/187 (45%), Gaps = 10/187 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
           G  + +   +  RI  ++  D L+ L N   FI            Y    ++++ D+D F
Sbjct: 265 GLDMTDKKEAEKRIVWMAEHDPLTDLCNRRKFIEEFEKSLRTAIRYKHNNALLYLDLDQF 324

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND  GH  GD+++  ++  L  V      V RLGG+EFA     + E  A +L   +
Sbjct: 325 KDINDTSGHSAGDELLKEVAKTLKRVTRFTDLVARLGGDEFAVLMPETDEVGAVVLTKKI 384

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +  ++  Q+   +     I+ S GI     H   I  ++  +D A+Y AK +G+N    F
Sbjct: 385 QAELQKIQLEYGN-VKHKISSSIGIVNYPVHDASIHELMGFSDLAMYKAKSAGKNTYHIF 443

Query: 259 SDIENNT 265
           S  ++ T
Sbjct: 444 S-ADDQT 449


>gi|194446201|ref|YP_002042644.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194404864|gb|ACF65086.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 699

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 114/273 (41%), Gaps = 21/273 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIA--------NIFLFYIGLTPFYGL 61
           ++WL      E           ++   I IA + +          N  + + G+   +  
Sbjct: 156 ALWLTFRLRHEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLA 215

Query: 62  EYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
             + V  L+++ I++ +SL    +      +   L  +   ++QL+  D L+ L N    
Sbjct: 216 VLVSVVALTILGITLLVSLFDARLQARTALLASSLAQANQELAQLALHDTLTRLPNRVLL 275

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L              +++F D+D FK +ND +GH +GDK++  ++ +L         
Sbjct: 276 EDRLEQAISKANREGSSFALLFMDLDGFKTVNDAYGHDIGDKLLVAVTHRLNQPLSGQFT 335

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF   A  S+  EAA LA+ L   I+           + +T+S GIA      
Sbjct: 336 LARIGGDEFVLLAEVSAPDEAASLASALVHSIDA--PFTIDPYELVVTLSVGIALYPLDG 393

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +    +++ AD A+Y  K +GRN    F    N
Sbjct: 394 KNERELMFNADAAMYHTKHTGRNGYHFFQPSMN 426


>gi|157960190|ref|YP_001500224.1| GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella pealeana ATCC 700345]
 gi|157845190|gb|ABV85689.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           pealeana ATCC 700345]
          Length = 873

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 89/192 (46%), Gaps = 16/192 (8%)

Query: 82  LGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSAFISSLGSYNE--------KLS 130
           L  ++  + KE+        ++   ++ D L+GL N S F+  L    +        + +
Sbjct: 423 LESVNQDLEKEINQRKCIERQLVHDAKHDNLTGLPNRSMFMERLTQAIKHVRRHSLNRFA 482

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-E 189
           ++F D+D FK +ND  GH  GD+ +   + +L     +   + RLGG+EF       + +
Sbjct: 483 VLFIDMDRFKLLNDTLGHLQGDRFLIETAKRLQQCIRSNDMLARLGGDEFVIFLDSINGQ 542

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVA 247
           Q+A  +A  +  + E S+    +    + + S G+A     H +   +I+  AD A+Y A
Sbjct: 543 QDAEDVAERV--LAELSRPYELANQQFNSSASIGLAMSGLSHSDTSESILRDADTAMYQA 600

Query: 248 KKSGRNRVVCFS 259
           K  G+   V F+
Sbjct: 601 KSHGKGCYVIFN 612


>gi|95930360|ref|ZP_01313097.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95133612|gb|EAT15274.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 505

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 92/175 (52%), Gaps = 11/175 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +EL      +S+L+  D L+GL N   F       +     Y    +++ FDID FK IN
Sbjct: 325 QELATVNTELSRLAFEDSLTGLYNLRYFHDYFDRELQRSARYGTVFTLLMFDIDDFKAIN 384

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GD+V+  +++    +      + R GGEEFAA    +S  +A  +AN LR+ I
Sbjct: 385 DSHGHQAGDQVLIEIANLSRNMLRNTDVMVRYGGEEFAALLPETSLPQAHEIANRLRQEI 444

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRV 255
           E   + + +   + +T+S G+A    ++     + +I  AD+ LY +KK+G+NR+
Sbjct: 445 EKLTV-VWNNKKLQVTVSMGLAFYDPEQGTKNKNELIDIADKGLYQSKKAGKNRI 498


>gi|297624841|ref|YP_003706275.1| diguanylate cyclase/phosphodiesterase [Truepera radiovictrix DSM
           17093]
 gi|297166021|gb|ADI15732.1| diguanylate cyclase/phosphodiesterase [Truepera radiovictrix DSM
           17093]
          Length = 658

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 101/244 (41%), Gaps = 21/244 (8%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS 88
           +  +   S+   ++++     L        Y L  +++ N++  +++   SL +     S
Sbjct: 140 VALTCLSSMVAISLVYAVPNLLAGENYGEVYALSQLVLANVTFYVLTQLFSLYMERFIRS 199

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------------NEKLSIVFFDI 136
                      + +L+  D L+GL N  A  + L                +KL+++F DI
Sbjct: 200 -----QTHAQTMERLAYTDLLTGLPNRLALENELKRLLFADDPLEPHPLPDKLALLFIDI 254

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAIL 195
           D FK +ND  GH  GD ++  ++ +L         + R+ G+E+           EA  +
Sbjct: 255 DGFKLVNDTMGHEAGDTLLVLIAQRLRTYSRQGDLLARMSGDEYVLVLHNVRCGDEAVRV 314

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           A  L+  ++  +     G  + ++ S G++         + ++  AD A+Y  K +G+N 
Sbjct: 315 AEALKLALD--EPFFIEGQVVSVSASIGVSVYPEDALDPAGLLRHADSAMYHVKHAGKNG 372

Query: 255 VVCF 258
           V  +
Sbjct: 373 VKRY 376


>gi|239990953|ref|ZP_04711617.1| putative integral membrane phosphodiesterase [Streptomyces
           roseosporus NRRL 11379]
          Length = 940

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 16/194 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKL-----SIVFFDI 136
            ++   + E      ++   +  D L+ L N + F + +       +      +++F D+
Sbjct: 456 LLNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTARVRQALGGRRAGDLGTAVLFIDL 515

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-------E 189
           D FKQ+ND  GH  GD+++     +L           RLGG+EFAA  +G         E
Sbjct: 516 DGFKQVNDTIGHQAGDELLIQAGRRLQESVRAGDTAARLGGDEFAALIMGDGTRDQGARE 575

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            +   +A+ LR  +  SQ        + +  S G+A        + ++  AD A+Y AK 
Sbjct: 576 YQVHEIADRLRLTL--SQPYRIGASEVRVAASIGVAFAEPAITPTDLMRNADLAMYRAKA 633

Query: 250 SGRNRVVCFSDIEN 263
            G++RV  ++    
Sbjct: 634 GGKDRVELYAPQMQ 647


>gi|222054632|ref|YP_002536994.1| diguanylate cyclase with GAF sensor [Geobacter sp. FRC-32]
 gi|221563921|gb|ACM19893.1| diguanylate cyclase with GAF sensor [Geobacter sp. FRC-32]
          Length = 667

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 9/166 (5%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDK 153
            +++  D L+GL N     + +     +       L+I+F D+D+FK  ND  GH  GD+
Sbjct: 498 EKMAVTDALTGLYNRRFLKNRIEEELNRSIRQKLNLTILFIDLDHFKIYNDLCGHIAGDE 557

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +   +  +         V R GGEEF A   G+S+ E+  +A  +R  IE         
Sbjct: 558 ALRKTAAIIRASVRDMDIVARYGGEEFCAILPGTSKTESLAVAERIRAGIEKEAFPEEEN 617

Query: 214 PSI-HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +  +T S G+A         +++++ AD ALY AK SGRN +V 
Sbjct: 618 LPLGRLTTSIGVASFPEDGHTFTSLVHAADVALYQAKTSGRNAIVV 663


>gi|170289046|ref|YP_001739284.1| TPR repeat-containing diguanylate cyclase and serine/threonine
            protein kinase [Thermotoga sp. RQ2]
 gi|170176549|gb|ACB09601.1| diguanylate cyclase and serine/threonine protein kinase with TPR
            repeats [Thermotoga sp. RQ2]
          Length = 1203

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 71/182 (39%), Positives = 94/182 (51%), Gaps = 17/182 (9%)

Query: 82   LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
             G I  +IL+E           S  D L+G+L+   F+  L         Y   LSI+  
Sbjct: 1022 FGNILTTILRERL-----YRDRSMKDPLTGVLSRWYFMERLEEEAYKSSRYKSPLSIIMC 1076

Query: 135  DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
            D D FK+IND FGH  GDK + +L  ++  V      VGR GGEEF  A  G+S +EA I
Sbjct: 1077 DADDFKKINDQFGHVAGDKTLGWLGRKMKSVLRKSDLVGRYGGEEFIIALPGTSLEEAKI 1136

Query: 195  LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            +A  LRK +     N     + HIT+S G+AE  + E     I RAD+ALY+AK  G+N 
Sbjct: 1137 VAEKLRKAVMEDPEN-----TYHITLSFGVAEYKNGEDPFETIKRADEALYLAKTLGKNS 1191

Query: 255  VV 256
            VV
Sbjct: 1192 VV 1193


>gi|71278228|ref|YP_271298.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71143968|gb|AAZ24441.1| sensory box/GGDEF/EAL domain protein [Colwellia psychrerythraea
           34H]
          Length = 762

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 11/179 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSL----GSYNEKLSIVFFDIDYFKQ 141
           I+ E   +  RI  L+  D L+ L +   F   I  L         K  +++ D+D FK 
Sbjct: 319 IVMEREQNQKRIQNLAYTDELTKLSSRPHFYINIEELVKISAREKNKFGLLYIDLDNFKT 378

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND+ GH VGD ++  ++ +L        ++ RL G+EF  A      +  AA +A    
Sbjct: 379 VNDSLGHDVGDLLLKKVAQRLKSACREIDYIARLSGDEFCIAVNNVMDDYGAAHVAQRCL 438

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           ++I  S+    +G       S GIA        + TI+  AD ALY AK  G+NR   +
Sbjct: 439 ELI--SKPVELAGRKFTPACSIGIAHYPDDGIDLQTILKAADTALYAAKDLGKNRFAFY 495


>gi|117921925|ref|YP_871117.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117614257|gb|ABK49711.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 302

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 79/179 (44%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
            S + +      ++ QLS  D L+GL N       L         +    SI+  D+D+ 
Sbjct: 122 ASNISKRHKLELQLRQLSDTDQLTGLYNRRRLDRDLQLLFDTFSRHRIPASILVLDLDHL 181

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND  GH  GD+VI  ++D     F       R GG+EF  A  G    +A + A  L
Sbjct: 182 KRINDQLGHQAGDRVIMAVADTCQQQFRKTDSAYRFGGDEFVIALPGVDHDQAIVFAEYL 241

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
                 +   +S    +  T+S G+A     +      + RAD ALY AK+ G+NRV+ 
Sbjct: 242 CDCCFKALQQLSV-KGLFATVSIGVASIEAGDKSYEDTLKRADAALYQAKRDGKNRVIA 299


>gi|297578939|ref|ZP_06940867.1| GGDEF family protein [Vibrio cholerae RC385]
 gi|297536533|gb|EFH75366.1| GGDEF family protein [Vibrio cholerae RC385]
          Length = 976

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 114/228 (50%), Gaps = 22/228 (9%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI------------- 95
           F +   + P +     ++    ++ +++ +SL++  I     +EL++             
Sbjct: 739 FSYVFIIEPHWWQRKEVIVMAGMLFLALAVSLVMWRIRILKRRELYLVEQVALKTQKLRL 798

Query: 96  SYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
              +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIND + H
Sbjct: 799 QAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIAVLDIDHFKQINDRYSH 858

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+ I  +S +L+   G    V R GGEEF    LG   ++A      LR  IE   +
Sbjct: 859 IIGDQAIVAVSQELLRYVGDKTRVARWGGEEFTILYLG-DPKQAWGYFEKLRCKIEQVDL 917

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  + P +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 918 SAVA-PGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 964


>gi|82703414|ref|YP_412980.1| response regulator receiver /GGDEF/PAS/PAC domain-containing
           protein [Nitrosospira multiformis ATCC 25196]
 gi|82411479|gb|ABB75588.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosospira multiformis ATCC
           25196]
          Length = 1025

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 84/185 (45%), Gaps = 13/185 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           +   +  R++ L++ D L+ L N S F+  L            ++ +VF D+D FK +ND
Sbjct: 575 DRKTTEERLTYLAQFDPLTELPNRSLFLDRLRQAMEHAHRNRRRVGVVFADLDRFKIVND 634

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
             GH  GD+++  ++ +L     +   V RLGG+EFA         ++A ++A    K+I
Sbjct: 635 TMGHSTGDELLIHVAKRLQQCVRSCDTVARLGGDEFALILSDLVQPEDATLIAE---KVI 691

Query: 204 ENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              Q+        I+++ S GI+          +++  AD A++ AK+ G      +   
Sbjct: 692 SALQVPFELETQEIYVSASLGISIYPGDGTDADSLLRNADTAMFQAKEQGPAIYQFYLPQ 751

Query: 262 ENNTC 266
            N   
Sbjct: 752 MNERA 756


>gi|241764426|ref|ZP_04762450.1| diguanylate cyclase with PAS/PAC and GAF sensors [Acidovorax
           delafieldii 2AN]
 gi|241366168|gb|EER60745.1| diguanylate cyclase with PAS/PAC and GAF sensors [Acidovorax
           delafieldii 2AN]
          Length = 467

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 13/188 (6%)

Query: 81  LLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSI 131
           LL ++S  +    E      R+  +++ D L+ L N   F+  L +   +       LS+
Sbjct: 259 LLQFVSTQVAAAIERTQMRERLQHMAQYDPLTHLPNRQLFLDRLKTALTRARRDDSLLSL 318

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQ 190
           +F D+D FKQ+ND  GH +GD ++  ++ +L+        V RLGG+EF           
Sbjct: 319 LFVDLDRFKQVNDTLGHAMGDLLLQRVAQRLLECVRASDTVARLGGDEFVVLLEARQDTD 378

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
               +A  + +     Q     G  + +  S GIA    H    + ++  AD A+Y++KK
Sbjct: 379 HPHAVAQKILEAF--VQPFDLEGRHVPMWPSIGIATYPDHGADENLLLNHADAAMYLSKK 436

Query: 250 SGRNRVVC 257
           SG N+V  
Sbjct: 437 SGGNQVRM 444


>gi|229514820|ref|ZP_04404281.1| diguanylate cyclase with PAS/PAC sensor [Vibrio cholerae TMA 21]
 gi|229348800|gb|EEO13758.1| diguanylate cyclase with PAS/PAC sensor [Vibrio cholerae TMA 21]
          Length = 326

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 85/173 (49%), Gaps = 11/173 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
            L  +  ++ QLS+ID L+ + N   F   L             +SI+  DIDYFK+ ND
Sbjct: 148 RLEEANRKLEQLSKIDGLTKISNRRYFDIKLDEIWREYSRLGHPVSIILIDIDYFKRYND 207

Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  L          V R GGEEFA  +  +   +A  LA  +R  +
Sbjct: 208 IYGHQAGDHCLCSVAGALKNQAKRVNDIVARYGGEEFAVIS-CTDIDDAFELAEKMRLAV 266

Query: 204 ENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNR 254
           ++  I         ++IS GIA       + IS++I +ADQALY +K +GRN+
Sbjct: 267 QSLSIEHKLSDKKIVSISLGIASTIPSRDKDISSLIEKADQALYESKGNGRNK 319


>gi|330972078|gb|EGH72144.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 505

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 99/228 (43%), Gaps = 15/228 (6%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK----ELFISYN 98
           I  A          P++      +    ++I+++    +L Y     L     EL I+ N
Sbjct: 256 IVAAAGISSQHVFAPWWAYAQRSMTITGIIILALVFLGVLLYRQIQQLITAEGELNIARN 315

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
            +  ++  D L+ L N   F ++L     +       ++I+  DID+FKQ ND +GH  G
Sbjct: 316 DLEIIAHTDSLTHLANRRCFDTALQQEWGRASRNDATIAIILLDIDWFKQYNDTYGHLQG 375

Query: 152 DKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D  +  ++  +   +  +     R GGEEF      +    A  LA  +R  IE S I  
Sbjct: 376 DDCLRQVAGLIGNSLDRSGDMAARYGGEEFVILLPETDLAGALKLAEKIRSSIEASCIEH 435

Query: 211 SSGPSIHITISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRNRV 255
           SS P   ++IS+G+      E        +  AD+ LY+AK  GRNRV
Sbjct: 436 SSSPLGRLSISSGVVAINAAEKKDAHTAALKEADRLLYLAKTKGRNRV 483


>gi|311278102|ref|YP_003940333.1| diguanylate cyclase [Enterobacter cloacae SCF1]
 gi|308747297|gb|ADO47049.1| diguanylate cyclase [Enterobacter cloacae SCF1]
          Length = 460

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 87/178 (48%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF    R  Q   ID L+ LLN           ++        LSI+  D+D FK
Sbjct: 281 TLLRELFEEVAR--QEVGIDVLTKLLNRRFLPPIFKREVAYASRTGTPLSILVIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD V+  +S        +  +V R GG+EF      +S  E   LA  +R
Sbjct: 339 GINDTWGHHTGDDVLRRISQVFYDNVRSSDYVFRYGGDEFIVMLTEASGSETLQLAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + +E  ++   +G +I +++S G A          +I  AD+ALY+AKK GRN V  +
Sbjct: 399 RRVEKIKMQSPTGDAIPLSLSIGAAMFSGHPDYEHLIRNADEALYIAKKRGRNCVELW 456


>gi|322436489|ref|YP_004218701.1| diguanylate cyclase [Acidobacterium sp. MP5ACTX9]
 gi|321164216|gb|ADW69921.1| diguanylate cyclase [Acidobacterium sp. MP5ACTX9]
          Length = 453

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 12/177 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           ++ S L     + N+I  +++ D L+GL N +     +         Y +  +++  D+D
Sbjct: 268 VAASDLTSQKEAENKIRHMAQHDPLTGLPNRTLLDDRIQQAIERAIRYRQNAAVLLLDLD 327

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK IND +GH  GD+V+  ++ +L         V RLGG+EF              + +
Sbjct: 328 TFKSINDTYGHAAGDEVLKTVAARLRSAVRATDSVFRLGGDEFVIVL--GDLATKGPIVD 385

Query: 198 DLRKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
             RKI  +    I     +++I+ S G+A           ++ +AD A+Y  K+ GR
Sbjct: 386 FTRKIFVSLLPPIPWEDQALNISASIGVANYPGDGATPEALLVQADIAMYRMKR-GR 441


>gi|261823051|ref|YP_003261157.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
 gi|261607064|gb|ACX89550.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
          Length = 526

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 66/250 (26%), Positives = 108/250 (43%), Gaps = 18/250 (7%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL 80
           +  P   ++   +  ++ +A +  +    L  +   P + L     +  +  +     ++
Sbjct: 274 TLKPLDGLMLNVLRHTLPLALLTILCVWLLARLIAQPLWLLARSANKMDATDVSDDIRNI 333

Query: 81  LLGYISGSILKE--------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKL 129
              Y   S LK+        L     ++   +  D ++ LLN     S L  +    +  
Sbjct: 334 HSWYFEASQLKQAMLLGIDLLQRKIGKLRSEAHSDPMTELLNRRGLDSVLRYWQMGQKSF 393

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID FK+IND  GH VGD VI +LS  +         + R GGEEF      +S+
Sbjct: 394 AVIALDIDRFKRINDTHGHDVGDTVIRYLSQLIRTSSREADILCRSGGEEFLILLPETSQ 453

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYV 246
            EA  +A  LR+  + S I +      ++TIS G+A          I      AD+ALY 
Sbjct: 454 DEAIKIAERLRQRTQESTIPVVG----NMTISLGVALWEPGTSGMSIERTFKLADEALYQ 509

Query: 247 AKKSGRNRVV 256
           AK+ GRNRVV
Sbjct: 510 AKQEGRNRVV 519


>gi|239908619|ref|YP_002955361.1| putative response regulator [Desulfovibrio magneticus RS-1]
 gi|239798486|dbj|BAH77475.1| putative response regulator [Desulfovibrio magneticus RS-1]
          Length = 321

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 80/178 (44%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           +EL     +  QLS  D L+G+ N   F  +              LS +  DID FK  N
Sbjct: 140 RELEALTRKFEQLSNQDGLTGVPNRRCFEDAFRKEWLRSRRDGTPLSALMIDIDCFKLYN 199

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD  +  +++ +V        F  R GGEEF     G+    A  +A  +R  
Sbjct: 200 DTYGHLQGDLCLRRVAEAIVEALKRPGDFAARYGGEEFVTLLPGTDLAGALSIAGIIRGN 259

Query: 203 IENSQINISSGPSIHI-TISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVC 257
           +  + I  +S P   I T+S GI+       +   T++  +D ALY AK +GRNRV  
Sbjct: 260 VRAANIEHASSPVADIVTVSIGISGVVPNMDLEPETLLAASDAALYQAKSAGRNRVEV 317


>gi|21242173|ref|NP_641755.1| hypothetical protein XAC1420 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21107589|gb|AAM36291.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 507

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 77/179 (43%), Gaps = 14/179 (7%)

Query: 95  ISYNRISQLSR---IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
            S NR+  L+     D L+G+ N                     LSI F D+D FK++ND
Sbjct: 316 ESENRMRHLAEQASRDALTGVFNRHQLGTALTHEFELASRQGWPLSIAFIDLDDFKRVND 375

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD+V+   +  L  +  T   V R GGEEF      +    A ++   +     
Sbjct: 376 AHGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEFLVILPNTPADAALMVIERILAETA 435

Query: 205 NSQINISSGPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +    G  +HIT SAG+A     E     I  ++  AD  LY +K  GRNRV  + 
Sbjct: 436 RTPMAQLQGGPLHITFSAGLATHGGAERQFDSIDHLLQAADSTLYRSKHRGRNRVTAYD 494


>gi|258621551|ref|ZP_05716584.1| GGDEF family protein [Vibrio mimicus VM573]
 gi|258586169|gb|EEW10885.1| GGDEF family protein [Vibrio mimicus VM573]
          Length = 978

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 110/228 (48%), Gaps = 22/228 (9%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE-------------LFI 95
           + +   + P +     ++  L ++++++ IS+++  I     +E             L  
Sbjct: 741 YSYSFTIAPHFWQRKEVIFMLGMLVVALFISVVMWRIRTLKRREWYLVEQVALQTQKLRF 800

Query: 96  SYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
              +  +LS+ D L+GL N  AF        S +    +++SI   DID+FKQIND + H
Sbjct: 801 QAEKFERLSKEDELTGLANRRAFDVYLKQAFSRVEHPGQQVSIGLLDIDHFKQINDRYSH 860

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+ I  +S QL+        V R GGEEF    +G   +EA     +LR  IE    
Sbjct: 861 IIGDQAIVAVSQQLLKYVRDKTRVARWGGEEFTILYVG-DPKEAWSYFEELRCTIEQVDF 919

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  + P + +T+S G A+    E   +++  AD AL  AKK GRNRVV
Sbjct: 920 STVA-PGLTVTVSVGFADSQQAESYESVLKLADHALLTAKKLGRNRVV 966


>gi|87119415|ref|ZP_01075312.1| hypothetical protein MED121_05740 [Marinomonas sp. MED121]
 gi|86164891|gb|EAQ66159.1| hypothetical protein MED121_05740 [Marinomonas sp. MED121]
          Length = 938

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 98/212 (46%), Gaps = 17/212 (8%)

Query: 63  YILVENLSLVIISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           ++  E LS+ +        + YI   + + +   + N +  L+  D L+ L N   F   
Sbjct: 453 HLFPEWLSINVYKDKQGKAINYIGTIVDISKRKQAENTLQHLADYDSLTDLPNRRFFKEQ 512

Query: 122 LGSYNE------------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
           +    E            K +++F D+DYFK IND+ GH  GDKV+  ++ +L+      
Sbjct: 513 VDHIIEIDKQRKPTEPINKFALLFLDLDYFKFINDSLGHSAGDKVLKIIASRLLEHKDKN 572

Query: 170 MFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
             + RLGG+EF       + ++A      +L + IE   +NI  G S+ +T S G     
Sbjct: 573 TIISRLGGDEFVIVLQDIASEKAVKQFCFELMQNIEK-PMNIL-GRSLIVTPSIGATLYP 630

Query: 229 -HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                 + ++  AD ALY AK++GRN V  F+
Sbjct: 631 KDGNRTNILLKNADAALYRAKENGRNNVQFFT 662


>gi|330810628|ref|YP_004355090.1| diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378736|gb|AEA70086.1| putative diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 361

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 59/191 (30%), Positives = 85/191 (44%), Gaps = 14/191 (7%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---------- 129
           + LG+        L      +  LSR D L+GLLNH A+   L    ++           
Sbjct: 160 MALGWFCYRQAYILGRQKRELLALSRTDSLTGLLNHGAWKDRLNEEFQRCQRHPNDGAGR 219

Query: 130 -SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            +I   DID+FK IND +GH  GD V+  L   L         VGR GG+EF       +
Sbjct: 220 GAIALIDIDHFKAINDTYGHVAGDIVLRQLGKMLKQNLRAADVVGRYGGDEFCVILPDLT 279

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247
              A    + LR+      ++    P++ +++S G+A         +  +  ADQALY A
Sbjct: 280 LHNAVQAMDGLRERFAT--LSYEQNPALKVSLSIGLAAFNPAYGDATHWLNDADQALYEA 337

Query: 248 KKSGRNRVVCF 258
           K  GRNRV C+
Sbjct: 338 KTGGRNRVTCY 348


>gi|290512849|ref|ZP_06552214.1| membrane-bound diguanylate cyclase [Klebsiella sp. 1_1_55]
 gi|289774732|gb|EFD82735.1| membrane-bound diguanylate cyclase [Klebsiella sp. 1_1_55]
          Length = 594

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 11/177 (6%)

Query: 93  LFISYNRIS----QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           L ++  R+     + +  D L+GL N      +L S        +  LS +  DID+FK 
Sbjct: 412 LALANQRLRSALLEKALFDSLTGLRNRHHLDEALHSQMALAVHTHTPLSCLMIDIDHFKA 471

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH  GD VI  ++  +           R GGEEF     G  E  A   A+++  
Sbjct: 472 INDRYGHEAGDLVIKSVATIVQRAVRDIGMAFRYGGEEFLVLLPGIDEAGAHQCASEIYT 531

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + N  +         + +S GIA         +++  AD ALY AK+ GR+R+V F
Sbjct: 532 QVHNMTLRDGLTEIGQVDVSIGIASYPQHTQSDSLLRAADAALYRAKELGRSRIVSF 588


>gi|168233975|ref|ZP_02659033.1| bacterial signalling protein N repeat [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194471369|ref|ZP_03077353.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194457733|gb|EDX46572.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205332028|gb|EDZ18792.1| bacterial signalling protein N repeat [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 691

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 114/273 (41%), Gaps = 21/273 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIA--------NIFLFYIGLTPFYGL 61
           ++WL      E           ++   I IA + +          N  + + G+   +  
Sbjct: 156 ALWLTFRLRHEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLA 215

Query: 62  EYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
             + V  L+++ I++ +SL    +      +   L  +   ++QL+  D L+ L N    
Sbjct: 216 VLVSVVALTILGITLLVSLFDARLQARTALLASSLAQANQELAQLALHDTLTRLPNRVLL 275

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L              +++F D+D FK +ND +GH +GDK++  ++ +L         
Sbjct: 276 EDRLEQAISKANREGTSFALLFMDLDGFKAVNDAYGHDIGDKLLVAVTHRLNQPLSGQFT 335

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF   A  S+  EAA LA+ L   I+           + +T+S GIA      
Sbjct: 336 LARIGGDEFVLLAEVSAPDEAASLASALVHSIDA--PFTIDPYELVVTLSVGIALYPLDG 393

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +    +++ AD A+Y  K +GRN    F    N
Sbjct: 394 KNERELMFNADAAMYHTKHTGRNGYHFFQPSMN 426


>gi|320353827|ref|YP_004195166.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Desulfobulbus propionicus DSM 2032]
 gi|320122329|gb|ADW17875.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfobulbus propionicus DSM 2032]
          Length = 740

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 13/187 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYF 139
             + E     ++I+  +  D L+GL N + F   L    E+         +++  D++ F
Sbjct: 291 QDISERKSFEDQITHQAFHDALTGLPNRTLFGERLQRALERSRRRPELYYAVLMIDLNKF 350

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K IND+ GHP GD+++  ++ +L V   +   V RLGG+EFA      ++ +E    A  
Sbjct: 351 KAINDSLGHPAGDQLLIEVAKRLSVCVRSVDTVARLGGDEFAIILEEFTARKELLKAARR 410

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           +  I+   +     G  I    S GI  +         I+  AD A+Y AK+ G+  +V 
Sbjct: 411 MHSIL--CEPFSLYGNDITPGASIGIVPKIADYTSAEEILRDADIAMYRAKQQGKG-IVL 467

Query: 258 FSDIENN 264
           F    + 
Sbjct: 468 FDKRMHQ 474


>gi|304395058|ref|ZP_07376942.1| diguanylate cyclase [Pantoea sp. aB]
 gi|304357311|gb|EFM21674.1| diguanylate cyclase [Pantoea sp. aB]
          Length = 364

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 68/271 (25%), Positives = 115/271 (42%), Gaps = 29/271 (10%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFI-----ANIFLFYIGLTPFYGLE 62
           F   W+ +     + SP   +I  ++  S   +   ++        FLF   L       
Sbjct: 89  FGGFWVANM----ALSPLPSIIIMAVLISDRYSAGGWVQLKSAIKAFLFTFMLAWLVEKA 144

Query: 63  YILVENLSLVIISITISLLLGY------ISGSILKELFISYNRISQLSRIDCLSGL--LN 114
            IL+ N S   + +T+ L  GY      +S ++   L      + +++ +D   GL   N
Sbjct: 145 PILL-NFSTRTVWLTLPLASGYLLALSVVSHNLTLSLRKKNRELERIALMDP--GLKIPN 201

Query: 115 HSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
              F   L S          K  ++  D+D+FKQ+ND FGH  GD ++A +S  L    G
Sbjct: 202 RRLFEQRLESEFLRTQRGEGKAWLMLLDVDHFKQVNDTFGHEAGDFLLAEISALLRNSVG 261

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
                 R GG+E       + E    +LA  +++ I   ++   + P+   ++S GIA  
Sbjct: 262 LKDIPARFGGDELCVIVRDADEASITLLAEQIKQGIALLRLP--ASPTFQCSVSIGIAPA 319

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              E I   +  AD+ALY  K++GRN +  +
Sbjct: 320 SDAESIHQWLRCADEALYQVKRAGRNNIQVW 350


>gi|229132572|ref|ZP_04261421.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196]
 gi|228650918|gb|EEL06904.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196]
          Length = 800

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 94/200 (47%), Gaps = 10/200 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           +++V I I       Y+    +  +    + I+ L+  D ++G+ N   F   L      
Sbjct: 341 VTIVPIMIEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTGIGNRIFFQQELEKSIGR 400

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                ++  +++ D++ FK IND  GH +GD V+  ++ +        + + R+GG+EFA
Sbjct: 401 AQKTQDEFGLLYIDLNRFKTINDTLGHSIGDSVLKEVAKRFRTCLSPAIPLARIGGDEFA 460

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRA 240
                 +EQ+   L   L +I E  +  + +  S ++++S GIA         +T++  A
Sbjct: 461 IIVHNHTEQQLLDLCETLFRITE--EPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHA 518

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D A+Y AK+ G N V  + +
Sbjct: 519 DIAMYSAKEKGNNAVCMYDE 538


>gi|94499228|ref|ZP_01305766.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Oceanobacter sp. RED65]
 gi|94428860|gb|EAT13832.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Oceanobacter sp. RED65]
          Length = 375

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 13/205 (6%)

Query: 62  EYILVENLSLVIISITIS----LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           E+ +     +VI+           L    G   ++L  + ++I +L+  D L+GL N   
Sbjct: 152 EFFIFSGFVMVIVGFAFMGSEFSSLRQALGERHRQLKGAMSKIEELAITDELTGLYNRRH 211

Query: 118 FISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
            +  L            + ++ F D+D+FK++ND +GHP GDKV+   +  +        
Sbjct: 212 VMEILNQQRALANRSQYRFTVCFLDLDHFKKVNDQYGHPFGDKVLKRFASLVRTSLREVD 271

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
              R+GGEEF      + +++A  +   + +  + +        S+ +T+SAGI E    
Sbjct: 272 IGARIGGEEFILILADTCQEDAHEVVRRMAQRWQQTLFEPHE--SLVMTLSAGITEFHPP 329

Query: 231 EPISTIIYRADQALYVAKKSGRNRV 255
           E +  +I RAD+ LY AK+ GRN V
Sbjct: 330 ETLEAMIERADELLYEAKRDGRNCV 354


>gi|91786338|ref|YP_547290.1| diguanylate cyclase/phosphodiesterase [Polaromonas sp. JS666]
 gi|91695563|gb|ABE42392.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Polaromonas sp. JS666]
          Length = 989

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 94/213 (44%), Gaps = 17/213 (7%)

Query: 68  NLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY- 125
           +L +V ++     L  +++ G  + +   +  +I  L+  D L+ L N    +  L    
Sbjct: 520 DLEIVSVAAQNGDLTHWVAVGRDITQRKAADEKIHHLAFYDPLTELPNRQLLLDRLEQAL 579

Query: 126 ------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                  ++  ++F D+D FK +ND  GH  GD ++  ++ +L         V RLGG+E
Sbjct: 580 ADCTITRQEGVLMFIDLDNFKILNDTVGHSKGDLLLQKVAVRLKGCVRKLDTVARLGGDE 639

Query: 180 FAAAA------LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-P 232
           F            ++ ++A I+A  +   +   +    +G   + T S G+     ++  
Sbjct: 640 FVVMLQDLGTQPEAATRKAQIVAEKVLATLR--EPYDLAGYQHYSTSSIGVTPFNARQGS 697

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           +S ++ +AD A+Y AK  GRN V  F      +
Sbjct: 698 VSELLKQADLAMYQAKTMGRNTVCFFDPDMQAS 730


>gi|262171617|ref|ZP_06039295.1| GGDEF family protein [Vibrio mimicus MB-451]
 gi|261892693|gb|EEY38679.1| GGDEF family protein [Vibrio mimicus MB-451]
          Length = 889

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 109/228 (47%), Gaps = 22/228 (9%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE-------------LFI 95
           + +   + P +     ++  L ++++++ IS+++  I     +E             L  
Sbjct: 652 YSYSFTIAPHFWQRKEVIFMLGMLVVALCISVVMWRIRTLKRREWYLVEQVALQTQKLRF 711

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
              +  +LS+ D L+GL N  AF   L           +++SI   DID+FKQIND + H
Sbjct: 712 QAEKFERLSKEDELTGLANRRAFDVYLKQAFSRVDHPGQQVSIGLLDIDHFKQINDRYSH 771

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+ I  +S QL+        V R GGEEF    +G   +EA     +LR  IE    
Sbjct: 772 IIGDQAIVAVSQQLLKYVRDKTRVARWGGEEFTILYVG-DPKEAWSYFEELRCTIEQVDF 830

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  + P + +T+S G A+    E   +++  AD AL  AKK GRNRVV
Sbjct: 831 STVA-PGLTVTVSVGFADSQQAESYESVLKLADHALLTAKKLGRNRVV 877


>gi|241764929|ref|ZP_04762929.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
 gi|241365491|gb|EER60256.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
          Length = 246

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 102/205 (49%), Gaps = 8/205 (3%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
               E +L E   LV  S    L +  ++    + L    + +   +  D L+G+LN +A
Sbjct: 44  LTSYERLLRETRRLVRRSDRAELEMTLLN----QRLQDLASELEYRATHDPLTGVLNRAA 99

Query: 118 FISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            I  +  + ++  L+++  DID+FK++ND+FGHP+GD VI  + + L  V      +GR+
Sbjct: 100 IIERVNQHAQQNDLALIVLDIDHFKRVNDSFGHPIGDTVILGVVNCLKAVVPRCAHIGRV 159

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           GGEEF           +  +A  +RK IE  +  +  G    IT S G++          
Sbjct: 160 GGEEFTVLLPHRETPASEQVAETMRKAIETREFGLPDGS--RITASFGVSHLSRGGCFDD 217

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
               AD+ALYVAK+ GRN+VV  +D
Sbjct: 218 AYGLADEALYVAKRGGRNQVVRAAD 242


>gi|238913532|ref|ZP_04657369.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 647

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 114/273 (41%), Gaps = 21/273 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIA--------NIFLFYIGLTPFYGL 61
           ++WL      E           ++   I IA + +          N  + + G+   +  
Sbjct: 112 ALWLTFRLRHEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLA 171

Query: 62  EYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
             + V  L+++ I++ +SL    +      +   L  +   ++QL+  D L+ L N    
Sbjct: 172 VLVSVVALTILGITLLVSLFDARLQARTALLASSLAQANQELAQLALHDTLTRLPNRVLL 231

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L              +++F D+D FK +ND +GH +GDK++  ++ +L         
Sbjct: 232 EDRLEQAISKANREGTSFALLFMDLDGFKAVNDAYGHDIGDKLLVAVTHRLNQPLSGQFT 291

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF   A  S+  EAA LA+ L   I+           + +T+S GIA      
Sbjct: 292 LARIGGDEFVLLAEVSAPDEAASLASALVHSIDA--PFTIDPYELVVTLSVGIALYPLDG 349

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +    +++ AD A+Y  K +GRN    F    N
Sbjct: 350 KNERELMFNADAAMYHTKHTGRNGYHFFQPSMN 382


>gi|290242970|ref|YP_003494640.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
 gi|288945475|gb|ADC73173.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
          Length = 792

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 9/200 (4%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--- 122
           +E ++  I + + +++   +    +         +   +R D L+GL N + F   L   
Sbjct: 318 IEEVASPIRNRSGAIIGAALVFRDVTRSRSLERDLIWAARHDELTGLPNRAEFERRLRKM 377

Query: 123 ----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                      S+++ D+D FK +ND  GHP GD+++  L+ Q      +   + RLGG+
Sbjct: 378 VIHARRNGIDHSLIYLDLDQFKVVNDTCGHPAGDELLRQLATQFQERLRSSDVLARLGGD 437

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTII 237
           EF       +  EA  +A  +R  +   +     G    + +S G+A            +
Sbjct: 438 EFGILLERCTLGEAEAIAEKIRASVAEGRFEW-QGKVFTVGVSIGVAPIDPDTGDAEQFM 496

Query: 238 YRADQALYVAKKSGRNRVVC 257
            +AD A Y+AK++GRNR+  
Sbjct: 497 SKADAACYLAKEAGRNRIHV 516


>gi|254523661|ref|ZP_05135716.1| Two component regulator three Y motif family [Stenotrophomonas sp.
           SKA14]
 gi|219721252|gb|EED39777.1| Two component regulator three Y motif family [Stenotrophomonas sp.
           SKA14]
          Length = 987

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 9/174 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           + + L        + +R D L+ L N   F  +L             L +V  DID+FK 
Sbjct: 811 LAERLARQAEAFERQAREDALTRLANRRGFDETLARDFARSQRSGHPLCLVVLDIDHFKD 870

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND   H +GD V+  ++  +           R GGEEFA     +  +EAA L   LR 
Sbjct: 871 VNDRHSHSIGDAVLVEVARLIAAASRDSDLPARTGGEEFALLLNDTRLEEAAQLCARLRG 930

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTII-YRADQALYVAKKSGRNR 254
           +  +   + +  P + +T SAG+ E    +    ++  RAD+ALY AK  GR+R
Sbjct: 931 LFHDHP-DWAGVPGLRVTFSAGLVELDADDRTPALLYQRADRALYRAKSDGRDR 983


>gi|134095065|ref|YP_001100140.1| hypothetical protein HEAR1864 [Herminiimonas arsenicoxydans]
 gi|133738968|emb|CAL62016.1| Conserved hypothetical protein, putative GGDEF domain
           [Herminiimonas arsenicoxydans]
          Length = 524

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 8/179 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDY 138
           + + +  L     ++S+L R D L+G LN                     L I   D+D 
Sbjct: 344 AEARIHNLETKLEQMSELVREDQLTGSLNRRGLEDIFERELARAERRGTPLCIAMLDLDD 403

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND +GH  GD+ +  L   +     +   + R GGEEF      +   EA      
Sbjct: 404 FKKINDKYGHSAGDEALIHLVRVIKETLRSMDVIARFGGEEFLIVLPDTGMDEAVQTVTR 463

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L++ +   QI + +   + +T SAG+A R  +E    +I RAD+ALY AK++G+NRVV 
Sbjct: 464 LQREL-TKQIFMHNHTRLLMTFSAGVALRNEREDQRAMIERADKALYEAKRTGKNRVVA 521


>gi|90423352|ref|YP_531722.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
 gi|90105366|gb|ABD87403.1| diguanylate cyclase (GGDEF domain) [Rhodopseudomonas palustris
           BisB18]
          Length = 456

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 88/175 (50%), Gaps = 11/175 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           ++  EL     R++ L+  D L+GL N   F  +L         Y    S++ FD+D FK
Sbjct: 272 AMAAELRDRAKRLAVLATTDRLTGLYNRLKFDETLASEIARAKRYKMPFSLIMFDVDLFK 331

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND +GHP+GD+V+  LSD           + R GGEEFA    GSS  EA ++A  LR
Sbjct: 332 TVNDRYGHPIGDRVLVGLSDLASSHLRETDMLARWGGEEFALLVTGSSRMEAYVVAEKLR 391

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             I +   +        ++ S G+ E    +    ++ RAD ALY AK +GRNRV
Sbjct: 392 TAIAHVAFD----QVGRVSCSFGVTEYRDGDIPELMVARADGALYQAKLNGRNRV 442


>gi|83646100|ref|YP_434535.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83634143|gb|ABC30110.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 539

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 70/259 (27%), Positives = 116/259 (44%), Gaps = 15/259 (5%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIF--IANIFLFYIGLTPFYGLEYILVENLS 70
           L + +    F+    ++ FSI F + I++ I   I  +  +   L+     E    EN +
Sbjct: 276 LINTERFNLFTIEAMIVLFSIGFGVAISSYISKPIDRLMKYTENLSASNVPEK---ENTT 332

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------G 123
            +     ++     I G+I  +L      + +++  D L+G+ N   F + L        
Sbjct: 333 RIFEINKLTGRFNKILGAI-DKLDKENIELKEMALRDPLTGIHNRRFFQNRLSYEFGRAK 391

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            Y   L +V  DID FK++NDN GH  GD+V+  L+  L         V R+GGEEF   
Sbjct: 392 RYKSDLILVLLDIDKFKEVNDNKGHGAGDEVLIKLASFLKHSLRISDIVARIGGEEFCII 451

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQ 242
                + +       L + I   + N  + P  HIT S G+A  +        I+ +AD 
Sbjct: 452 LPEKLDPDVRSFIFRLHRDISLLEFNYINDP-FHITCSMGVATLKTETRDPGEILKQADD 510

Query: 243 ALYVAKKSGRNRVVCFSDI 261
           ALY AK++GRNR++   ++
Sbjct: 511 ALYCAKRTGRNRIIYEDEL 529


>gi|56461466|ref|YP_156747.1| signal protein [Idiomarina loihiensis L2TR]
 gi|56180476|gb|AAV83198.1| Signaling protein with a acyltransferase and GGDEF domains
           [Idiomarina loihiensis L2TR]
          Length = 592

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 11/178 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQI 142
           L+EL      + Q +  D L+GL N   F   L     +        +++  D+D+FK +
Sbjct: 415 LRELQDVNTELEQKNTEDPLTGLYNRRYFQQHLERELRRTLRRELPLALLMVDVDHFKPV 474

Query: 143 NDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD+++  L+  +          V R GGEEFA     +  QEA   A+ L +
Sbjct: 475 NDTYGHLAGDQILQQLAKLMQQHAKRAADIVCRYGGEEFAIILPETDLQEAEAFASQLLE 534

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
            + N++    +G  + IT+S G+     +  + +  +   AD ALY AK  GR+R+  
Sbjct: 535 KVRNTEFKTDAGL-LKITLSIGVISTSVRIFDNVDELFKAADDALYAAKHEGRDRLAV 591


>gi|172039563|ref|YP_001806064.1| hypothetical protein cce_4650 [Cyanothece sp. ATCC 51142]
 gi|171701017|gb|ACB53998.1| hypothetical protein cce_4650 [Cyanothece sp. ATCC 51142]
          Length = 709

 Score =  181 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 11/183 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + +   +   +   +  D L+GL N +     L             ++I+  D+D FK 
Sbjct: 264 DVTQRREAEEILKYKAFHDELTGLPNRAFLHEHLSLALGNAQRNKSLMAILLLDVDGFKN 323

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLR 200
           IND  GH +GD ++   + +L         V R GG+EF        E +EAA  A  L 
Sbjct: 324 INDTLGHSIGDLILKCFAKRLQSQVRQGDLVCRWGGDEFIILLSRIKEPKEAAQFAERLL 383

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++     I +  G  I++  S GI       +   T++  AD ALY  K SGRN    + 
Sbjct: 384 EVF-KHPITV-EGNLIYLKSSIGITIYPEDGQDQETLLKSADLALYKTKNSGRNNYQFYH 441

Query: 260 DIE 262
              
Sbjct: 442 SKM 444


>gi|149188413|ref|ZP_01866706.1| GGDEF family protein [Vibrio shilonii AK1]
 gi|148837631|gb|EDL54575.1| GGDEF family protein [Vibrio shilonii AK1]
          Length = 340

 Score =  181 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 15/192 (7%)

Query: 82  LGYISGSILKELFISYNRISQL----------SRIDCLSGLLNHSAFISSLG---SYNEK 128
           + + +  I  +L  + + I++L          +  D L+ L N  AF + L       + 
Sbjct: 149 IRHSTDFIHNQLKNASDEIARLKSQLAKVQCNALFDSLTSLYNRGAFDADLNMFCDAKQP 208

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +S++F DID+FK+ ND FGH  GD ++  +S +L       +   R GGEEFA      S
Sbjct: 209 MSLIFLDIDHFKKFNDEFGHLFGDTILKGISQRLKQACRGGITAYRFGGEEFALIIPNKS 268

Query: 189 EQEAAILANDLRKIIENSQI-NISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYV 246
            + A  +A+ LR  IE   I +  +G  +  IT S G+AE    +   +++ RAD+ LY 
Sbjct: 269 LRVARQMADALRLAIEKMTIKDRKNGSKVGNITASFGVAEFTAGDTYISLVDRADKMLYD 328

Query: 247 AKKSGRNRVVCF 258
           AK++GRNRV+ F
Sbjct: 329 AKRAGRNRVMPF 340


>gi|123440952|ref|YP_001004941.1| hypothetical protein YE0586 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087913|emb|CAL10701.1| putative exported protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 407

 Score =  181 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 72/260 (27%), Positives = 117/260 (45%), Gaps = 32/260 (12%)

Query: 31  FSIFFSIFIAT---VIFIANIFLFYI--GLTPFYGLEYILVENLSL--VIISITISLL-- 81
            +  F   I +    IF++   LF I   L     + + +  N S    + S  I+ L  
Sbjct: 136 LAGLFVCLILSTLVAIFLSRRMLFGIIGSLNRITEVAHNVSRNRSFGQRVPSAQIAELNE 195

Query: 82  LGYISGSILKELF-------ISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEK 128
           L +    +L+EL           + ++  +  D L+GL N + F   L         NE 
Sbjct: 196 LSHDFNGLLEELEVWQKHLTQENDSLAHRAAHDSLTGLANRAYFEGRLSRTLSDCKTNEH 255

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGS 187
           ++++F D D FK+INDN+GH  GD V+  ++D+L  +      V RLGG+EFA       
Sbjct: 256 VAVLFLDGDRFKEINDNYGHAAGDVVLTTIADRLRALLRESDLVARLGGDEFAILLAPIY 315

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYV 246
           +  +  I+AN++ K +    I +  G  I  ++S G+A    H +    ++ RAD+A+Y 
Sbjct: 316 NTDDVLIIANNIIKSM-TQPITLPDGSEIISSLSIGVAIYPDHAQTPDELLQRADEAMYQ 374

Query: 247 AKKSGRNRVVCFSDIENNTC 266
           AKK        F   E  T 
Sbjct: 375 AKKG-------FRPCEQGTA 387


>gi|120612174|ref|YP_971852.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acidovorax citrulli AAC00-1]
 gi|120590638|gb|ABM34078.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax citrulli AAC00-1]
          Length = 872

 Score =  181 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 10/189 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFFDIDYF 139
           + + L + + +  R+  LS  D L+GL N       L +  E       L+++  D+D F
Sbjct: 418 TATNLTDEWQAQARVRHLSLHDTLTGLPNRRRLHQFLATLLESDGPAQPLALLCLDLDRF 477

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND  GH +GD+V+  ++ +L  + G      RLGG+EF     G+ + +A  +    
Sbjct: 478 KPVNDALGHALGDRVLQEVARRLQALLGPQDIAARLGGDEFVLVLAGAQDPDA--IGRRC 535

Query: 200 RKIIENS-QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             ++    +     G  + I  S G+ +   H      ++ + D ALY AK +GRN   C
Sbjct: 536 AAVVAALCEPFAFDGQIVCIGTSIGVVQAPLHARTAQELLRKGDIALYDAKAAGRNTWRC 595

Query: 258 FSDIENNTC 266
           ++D  +   
Sbjct: 596 YTDALDAQA 604


>gi|146306296|ref|YP_001186761.1| diguanylate cyclase [Pseudomonas mendocina ymp]
 gi|145574497|gb|ABP84029.1| diguanylate cyclase [Pseudomonas mendocina ymp]
          Length = 355

 Score =  181 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 18/217 (8%)

Query: 58  FYGLEYILVENLSLVIISITISL-LLGYISGSILKELFISYNRISQL----------SRI 106
              L+  ++++L  V+  +  S  L+       L  L  +   I+ L          + +
Sbjct: 129 LSALQEPIIDDLPSVLSGLQESTQLMQDQQEKFLYRLRAAQEEITHLRSQLERAHLAATL 188

Query: 107 DCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+ + N  AF   L       ++ L++V  DID+FKQ ND +GHP+GD+V+  +   L
Sbjct: 189 DSLTRVFNRHAFTRLLERALSETHKGLALVILDIDHFKQFNDQYGHPLGDRVLQHVGQLL 248

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSI--HIT 219
             +  +  F  R GGEEF                A  LR  I+  ++ +     +   IT
Sbjct: 249 RDLLPSGAFAARYGGEEFCVVLRDCVDLGAVLEFAEKLRNKIQALRVKVRRTDQVLDSIT 308

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S G A     + + T++ RAD ALY AK+SGRN+V 
Sbjct: 309 ASFGCALAEADDSLETLLTRADDALYQAKRSGRNQVH 345


>gi|117927307|ref|YP_871858.1| diguanylate cyclase [Acidothermus cellulolyticus 11B]
 gi|117647770|gb|ABK51872.1| diguanylate cyclase [Acidothermus cellulolyticus 11B]
          Length = 555

 Score =  181 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 4/169 (2%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           EL     R+   +  D L+GL N  A      +L   +   S++F D+D FK  ND+F H
Sbjct: 387 ELAAENERVEHEALRDALTGLANRRALDMALEALAKSDTVSSLLFVDLDDFKTTNDSFSH 446

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+V+  ++  L         V R GG+EF     G+  +    +   +R  ++    
Sbjct: 447 TVGDEVLRSIAAILRGECREDDVVARFGGDEFVLVLHGAPRKTGIRVGERIRSAVKAFSW 506

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                P + +++S G+AE      +S  +  AD ALY AK+ GR+RV  
Sbjct: 507 E-KIAPDLRVSVSIGVAEFQPGMDLSEALLTADSALYAAKQQGRDRVAA 554


>gi|332161457|ref|YP_004298034.1| putative inner membrane protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318605434|emb|CBY26932.1| GGDEF family protein [Yersinia enterocolitica subsp. palearctica
           Y11]
 gi|325665687|gb|ADZ42331.1| putative inner membrane protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330863226|emb|CBX73352.1| hypothetical protein YEW_LN48910 [Yersinia enterocolitica W22703]
          Length = 372

 Score =  181 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 68/254 (26%), Positives = 116/254 (45%), Gaps = 19/254 (7%)

Query: 27  FMIYFSIFFSIFIATVIFI-------ANIFLFYIGLTPFY-GLEYILVENLSLVIISITI 78
           ++   ++  +I I  ++F        ++IF   I L   Y  L  +L+   +L    I +
Sbjct: 102 WVTLDNVLITIVIIPLLFSKVWEKKSSHIFYTTIILIAIYRMLTAVLLVPNTLFWTQIVV 161

Query: 79  SLLLGYISGSI------LKELFI-SYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EK 128
             L+  +  +I       KE  I +Y  +   + ID L+ L N S+    L S N   + 
Sbjct: 162 YQLISALCLAICYHALNFKERHIYAYFAMKDRANIDKLTQLNNRSSADYRLNSINHNRQA 221

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
             ++  D+D+FK +ND +GH  GD ++  +   L+       FVGR GGEEF        
Sbjct: 222 CGLLILDLDHFKSVNDTYGHDAGDILLTEVGKLLMTAVRDEDFVGRYGGEEFIIITHSHD 281

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
            Q   ++A  +R+ +E+  + +  G  +  TIS G +       +   +   D+ALY AK
Sbjct: 282 PQAIKVVAERIRQRVESLDVQLPDGRKVKATISIGASLFLPGMSMLKALKMTDEALYQAK 341

Query: 249 KSGRNRVVCFSDIE 262
             GRN+VV +S + 
Sbjct: 342 NQGRNQVV-YSRLM 354


>gi|304309733|ref|YP_003809331.1| predicted response regulator receiver [gamma proteobacterium HdN1]
 gi|301795466|emb|CBL43664.1| predicted response regulator receiver [gamma proteobacterium HdN1]
          Length = 600

 Score =  181 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 9/179 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQI 142
           + E   +  RI  L+R D L+ LL  +AF  +L S   +++       +++ D+D FK +
Sbjct: 164 ISERRFAEERIQYLARHDYLTHLLTRTAFEETLTSLLSRIADEKAQHVLLYMDLDQFKLV 223

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD+++  +++ L           RLGG++FA     ++ +     A ++ K 
Sbjct: 224 NDTSGHMAGDELLCQVAELLRRHLRAHDIAARLGGDDFAIILYNATPESGKATAEEIIKA 283

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260
           I N       G    +  S G+    H+   +++++  AD A Y AK+ GRNRV  + D
Sbjct: 284 IGNLAFQH-DGARHSVGASIGLVSITHEASGVASLLSMADTACYAAKEDGRNRVHVYDD 341


>gi|242278952|ref|YP_002991081.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Desulfovibrio salexigens DSM 2638]
 gi|242121846|gb|ACS79542.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Desulfovibrio salexigens DSM 2638]
          Length = 1040

 Score =  181 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 12/193 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFD 135
           +I    + +      R+S  S  D L+GL N + F+  L               +++  D
Sbjct: 580 FIIYDDISQRKEYERRLSYQSLHDSLTGLPNRTFFLERLEETLDMSRKIPERTFAVLMLD 639

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAI 194
           ID FK+IND+ GH  GD+++  +  ++         V R+GG+EFA      S+ Q    
Sbjct: 640 IDMFKRINDSLGHQAGDELLIEVGKRIKCCLRPVDTVARMGGDEFAVLIEDFSTPQMVIQ 699

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           +  D+R  I   +    S   + I+ S GI  +    E    II  AD ++Y AK+ G N
Sbjct: 700 IIRDIRNEIR--KPMSISSREVVISSSIGIVFKTSSYEHPEHIIRDADISMYKAKEQGVN 757

Query: 254 RVVCFSDIENNTC 266
           +   F+   +   
Sbjct: 758 KFKVFNKTMHEKA 770


>gi|186681944|ref|YP_001865140.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Nostoc punctiforme PCC 73102]
 gi|186464396|gb|ACC80197.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Nostoc punctiforme PCC 73102]
          Length = 664

 Score =  181 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 13/184 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQ 141
           + E   + +++  L+  D L+GL N +AF++ L           N   +++F D+D FK 
Sbjct: 218 ITERKRAESQLLHLAFYDILTGLANRAAFMNRLSHAINYSKRHSNYLFAVLFIDLDRFKV 277

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           IND+ GH  GD+++   + +L V   +     RLGG+EF     G     +   +A  ++
Sbjct: 278 INDSLGHLNGDQLLLATASRLQVCVRSIDTAARLGGDEFTILLEGIQDVSDVITVAERIQ 337

Query: 201 KIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +  E +      G  + IT S GIA       +    ++  AD A+Y AK  GR R   F
Sbjct: 338 Q--ELALPFELEGQEVFITASIGIALSSTLDYKHPEEVLRDADTAMYQAKVQGRARYKLF 395

Query: 259 SDIE 262
           +   
Sbjct: 396 NSDM 399


>gi|126666596|ref|ZP_01737574.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter sp. ELB17]
 gi|126628984|gb|EAZ99603.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter sp. ELB17]
          Length = 460

 Score =  181 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 93/179 (51%), Gaps = 11/179 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           +++E  +   R    +  D L+ L N  ++   L         Y   ++I   DID+FK+
Sbjct: 286 LMQEQVLKERR---RANTDMLTQLPNRDSWQDRLQFEVDRWQRYKGDITIAVVDIDFFKR 342

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+FGH  GD+V+  L+ +L     +  F+ R+GGEEF      ++  +A  + + LR 
Sbjct: 343 INDSFGHKAGDRVLQLLARELKKGLRSTDFIARIGGEEFVVLLPETTGAQAKKVMDGLRD 402

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +     + S+ P + IT SAG+A   + +   T+  RAD+ LY AK +GRN+V+   +
Sbjct: 403 NVAKLPFHFSNQP-VTITFSAGLASIRNGDNEDTLFERADRTLYKAKNAGRNQVMISEE 460


>gi|114566146|ref|YP_753300.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114337081|gb|ABI67929.1| response regulator receiver modulated diguanylate cyclase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 301

 Score =  181 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 10/189 (5%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEK 128
           + + L +G     + + L  +       ++ D L+G+ NH+  ++            N  
Sbjct: 111 LEVRLRVGKRILDLQQSLNEALEIQRYQAQHDLLTGIFNHAKILNILEKELYRAKRQNSN 170

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+++  D+D+FK++ND +GH  GD V+  ++ ++         + R GGEEF     G S
Sbjct: 171 LAVIMGDLDHFKKVNDTYGHMAGDAVLVEVALRMKNTIRLYDSICRYGGEEFLLVLPGCS 230

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYV 246
            +EA I+AN +   I    +  +S P I +TIS G+A +   +    + ++  AD ALY 
Sbjct: 231 TEEAIIIANRILGSISQEPVVFNSTP-IAVTISLGVAMKAAGDKTTAAELVQLADAALYK 289

Query: 247 AKKSGRNRV 255
           AK++GRNRV
Sbjct: 290 AKQNGRNRV 298


>gi|304310742|ref|YP_003810340.1| hypothetical protein HDN1F_11000 [gamma proteobacterium HdN1]
 gi|301796475|emb|CBL44683.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 433

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
            + + EL      + + SR D L+G+ N  +F  +          +N  LS + FDID+F
Sbjct: 244 STDITELHDLRIELERQSRTDHLTGVGNRRSFYENAQREFARSRRHNTLLSFITFDIDHF 303

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQIND +GH  GD+V+  L+D  +        + R GGEEF      +    A  LA  +
Sbjct: 304 KQINDIYGHSAGDEVLHGLADVCLAALRREDTLVRTGGEEFGVLLPDTDIVSAFALAERI 363

Query: 200 RKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R +++ + +       + +++S G+A          T+  RAD+ALY AK+ GR+R V 
Sbjct: 364 RVLVKQALLGPKDS-GLQVSVSLGVAMLSQEDTSFDTLYLRADRALYEAKRGGRDRSVM 421


>gi|254457171|ref|ZP_05070599.1| response regulator [Campylobacterales bacterium GD 1]
 gi|207085963|gb|EDZ63247.1| response regulator [Campylobacterales bacterium GD 1]
          Length = 683

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 93/182 (51%), Gaps = 11/182 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
           + +        R+  LS  D L+GLLN +  I        S   ++ K+ ++F D+D FK
Sbjct: 501 TDIDSRKELELRLEHLSMTDKLTGLLNRNGLIENFEIFQKSAQRFDRKMGLMFIDLDGFK 560

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           ++ND  GH  GD+V+  +SD+L  +  +     R+GG+EF           E + L+  +
Sbjct: 561 KVNDTLGHAAGDEVLIIISDRLQSMSRSNEIAVRIGGDEFVIFIPEYEDIDELSSLSQRI 620

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                +  ++I  G  + I +S GIA   ++E +  I+ RAD+A+Y  KKSG++    F+
Sbjct: 621 LDSF-SIPLSIKDG-EVSIGMSIGIATADNRETLDEILSRADEAMYKVKKSGKDGYA-FA 677

Query: 260 DI 261
           DI
Sbjct: 678 DI 679


>gi|183219731|ref|YP_001837727.1| hypothetical protein LEPBI_I0307 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189909867|ref|YP_001961422.1| signal transduction protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774543|gb|ABZ92844.1| Signal transduction protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167778153|gb|ABZ96451.1| Hypothetical protein LEPBI_I0307 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 694

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 91/186 (48%), Gaps = 11/186 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           ++   + +   +  +I+ ++  D L+ L N ++ I  L         +   + I+  D+D
Sbjct: 245 VAFLDITQRRHAEEKIAYMAFFDQLTNLPNRNSLIDKLFPIFEEARRHGNLVGILAIDLD 304

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA 196
            FK IND+ GH  GDK+I  ++ ++         + R GG+EF       S+E++AA+++
Sbjct: 305 NFKIINDSRGHDFGDKIIKLVAYRIRESIRVYDLISRQGGDEFTVVLPDLSNERDAAVIS 364

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             +   +  +   +  G  I + IS GIA      +  +T++  AD AL +AK  G+N  
Sbjct: 365 ESILDAM--THPFVIDGERIFVNISIGIALYPTDGKDSNTLLKNADSALNLAKSQGKNCY 422

Query: 256 VCFSDI 261
           V F++ 
Sbjct: 423 VFFTEE 428


>gi|152968266|ref|YP_001364050.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Kineococcus radiotolerans SRS30216]
 gi|151362783|gb|ABS05786.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Kineococcus radiotolerans SRS30216]
          Length = 743

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 19/181 (10%)

Query: 88  SILKELFISY---NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           ++++E   +     RI +L+  D L+GL+N   F   +          +  L+++F D+D
Sbjct: 566 ALIRERDRAQSYLARIEELAYTDSLTGLVNRRRFEERVEVELWEARGGDSALAVLFMDLD 625

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAA 193
            FK +ND  GH  GD+++  ++ +L           RLGG+EF  +  G       +EA 
Sbjct: 626 GFKAVNDELGHAAGDQLLVQVAARLKARLRRSDLAARLGGDEFLVSLQGLDRASARREAD 685

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSG 251
            +A  LR  I   +    +G  + +T+S G+A       E   ++++RAD  +Y AK  G
Sbjct: 686 RVAEQLRAAIA--EPYDIAGQPVRVTVSIGVATFPEDDAEDFRSLLHRADVRMYAAKH-G 742

Query: 252 R 252
           R
Sbjct: 743 R 743


>gi|330964791|gb|EGH65051.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 308

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 8/170 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y   +Q +  D L+   N  A   SL         + + LS++  DID+FK++ND +GH 
Sbjct: 140 YRIATQTALRDPLTSTGNRIAMDQSLAREIEISSRHKQPLSLLMLDIDHFKKVNDEYGHH 199

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  L         V R GGEEF      +    A ++   LR+ + N +  
Sbjct: 200 TGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGVTAAELIGERLRQAVRNLEFR 259

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               P++ +T+S G +     E   +++ RAD ALYVAK+ GRNR+   S
Sbjct: 260 ELD-PALTMTVSLGCSTLLPTETADSLLRRADNALYVAKREGRNRLAMAS 308


>gi|330505712|ref|YP_004382581.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
 gi|328919998|gb|AEB60829.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
          Length = 746

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 104/233 (44%), Gaps = 19/233 (8%)

Query: 51  FYIGLTPFYGLEYILVEN----LSLVI--ISITISLLLGYISGS--ILKELFISYNRISQ 102
              GL+PF   EY +       L +++  ++ T S  L  ++GS   + +   +  ++  
Sbjct: 242 HLRGLSPFLHHEYRIRRRDGSYLWVLVRGVADTCSSGLRRMAGSQSDISQRRAAEEQLHH 301

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQINDNFGHPVGDKV 154
            +R D L+GL N +     L    ++         +++F D+D FK IND+ GH  GD+V
Sbjct: 302 AARHDPLTGLANRARLSELLQQAVQRRQRPGAREAALLFIDLDRFKLINDSLGHQTGDRV 361

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSG 213
           +  ++++L         + R GG+EF A     +   +A  +A  +   + +  + +   
Sbjct: 362 LVEVAERLSHCLRPGDHLARFGGDEFVALLDDLACMGDAERVAQRMLDSL-HVPLRLPE- 419

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            ++ ++ S GIA           +  AD ALY AK +G+ +   +S+      
Sbjct: 420 QTLAVSASIGIAGLQESGQPLDPLQAADLALYRAKSAGKAQFARYSNELQQQA 472


>gi|323158378|gb|EFZ44423.1| diguanylate cyclase domain protein [Escherichia coli E128010]
          Length = 207

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 66/212 (31%), Positives = 105/212 (49%), Gaps = 17/212 (8%)

Query: 48  IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107
           I L++I  +      + + + L L+ +   IS L+ Y+        F   N  + ++  D
Sbjct: 8   ILLYFIDKS---HPAWYMTKFLELISMIYIISTLMYYV--------FRKLNHANHMAIHD 56

Query: 108 CLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            L+   N   FI SL   S +   S++  DID FK IND +GH +GD+VI  ++  +   
Sbjct: 57  PLTNTYNRRYFIDSLKNISKHHDFSVIMLDIDNFKSINDKWGHHMGDQVIVMVTRIIKKS 116

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINISSGPSIHITISAG 223
                 +GRLGGEEF     G++++    +A  +RK IE   S+  +S GP   IT+S G
Sbjct: 117 IRKEDILGRLGGEEFGIIIKGNTQKLLLSIAERIRKNIEEQCSEKLLSHGPE-KITVSIG 175

Query: 224 IAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
                      S ++  AD+ALY AK++G+ R
Sbjct: 176 CFTSKENNFSPSEMLVNADKALYQAKRTGKTR 207


>gi|188535180|ref|YP_001908977.1| Putative sensory box protein [Erwinia tasmaniensis Et1/99]
 gi|188030222|emb|CAO98108.1| Putative sensory box protein [Erwinia tasmaniensis Et1/99]
          Length = 820

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 55/211 (26%), Positives = 89/211 (42%), Gaps = 19/211 (9%)

Query: 73  IISITISLLLG--------YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           IIS + S++ G         +    + +   +  RI  ++  D L+ L N   F   L  
Sbjct: 363 IISCSASIVRGKDARHSYILLIADDVTDQRAADERIHHMAHHDNLTSLPNRVLFNQYLTR 422

Query: 125 YNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
              +        +++  D+D FK +ND  GH +GD ++  ++ +L  V      + R GG
Sbjct: 423 ALREDSAAQRLTAVLGLDLDNFKNVNDALGHQIGDVLLCSVAVRLRGVLRDRDTLARNGG 482

Query: 178 EEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           +EF+      S   EA  +A  L + I      I  G S+ I +S GI            
Sbjct: 483 DEFSIVLPALSHSAEAETVARTLIETIR--PPFIVEGHSLSIGLSVGITIAQDDTSSPDY 540

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           ++  AD ALY AK++GRNR   F+       
Sbjct: 541 LLRCADMALYAAKRNGRNRFEHFTKEMGEMA 571


>gi|77361999|ref|YP_341573.1| GGDEF domain-containing protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876910|emb|CAI89127.1| putative protein with GGDEF domain [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 174

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 85/169 (50%), Gaps = 8/169 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           L +   ++   ++ D L+G+ N  +    +  L       +I+  DID+FK++ND +GH 
Sbjct: 8   LQLQIGQLRHDAQTDPLTGIHNRRSLKVWLDKLIHEQTLFTILEIDIDFFKRVNDTYGHD 67

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+ +  L+  +  +      V R+GGEEF       + + A  +A  LR  +E+S I+
Sbjct: 68  KGDETLKALTVLIQSIARKDDIVARIGGEEFVLVIPNQNSEGAFKIAERLRLAVESSYID 127

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
                  +ITIS GIA    H   I  +  +AD ALY AK+ GRNR V 
Sbjct: 128 TIG----YITISIGIASYPEHGTNIDQVFKKADNALYYAKEHGRNRSVI 172


>gi|224824527|ref|ZP_03697634.1| diguanylate cyclase [Lutiella nitroferrum 2002]
 gi|224603020|gb|EEG09196.1| diguanylate cyclase [Lutiella nitroferrum 2002]
          Length = 593

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 83/178 (46%), Gaps = 8/178 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           +   +KEL I+    S   + D L+G  N           IS     N  LS+   D+D 
Sbjct: 406 AEQRIKELEIALEAASAKVKEDQLTGAYNRRGLAEHFQREISRAERTNSPLSVALIDVDN 465

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND++GH  GD  +  L +           V R GGEEF      +   EA      
Sbjct: 466 FKQLNDHYGHLTGDDALKHLVNVTRHTMRPSDIVARFGGEEFVILLPDTPPPEAIQAIQR 525

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           L++ +      +++   + IT SAG+A+    E  + +I RADQA+Y AK SG+NRV 
Sbjct: 526 LQREL-TKTFFLANNDRLLITFSAGVAKWHLGERDTDVIERADQAMYQAKISGKNRVC 582


>gi|170750801|ref|YP_001757061.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657323|gb|ACB26378.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 574

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 11/188 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDID 137
           ++   +     +  R   ++R+D L+GL N        +A +  L    E  +++  D+D
Sbjct: 131 VTLEDVSTRKATEARADAMARLDPLTGLPNRLLLRERLAAALERLARPGEGFALLLIDLD 190

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILA 196
            FK +ND  GHP+GD ++A ++D+L         V R+GG+EF     G         LA
Sbjct: 191 RFKPVNDTLGHPIGDALLATVADRLRSTVQATDTVARIGGDEFVILQAGIRDAAGTQALA 250

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +  +I  +   +  G  + I  S G+A           ++  AD ALY AK  GR   
Sbjct: 251 RRVVDLIGRT--YMVEGHLLTIGASVGVALAPADGTDADRLLKNADLALYRAKLDGRGTY 308

Query: 256 VCFSDIEN 263
             F    +
Sbjct: 309 RFFEPEMD 316


>gi|168261188|ref|ZP_02683161.1| AdrA protein [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|207855867|ref|YP_002242518.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|238911482|ref|ZP_04655319.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|205350031|gb|EDZ36662.1| AdrA protein [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|206707670|emb|CAR31954.1| adrA protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 370

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 104/232 (44%), Gaps = 12/232 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            F++ +  ++    + L   GL P       L   LSL +I +   LL  ++S     +L
Sbjct: 141 LFTVGMGLLLASCLVTLQLTGL-PVAMRSSSLEVTLSLPVIML-YPLLFAWVSYQTAIKL 198

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
                R+  +S  D ++G+ N   +             ++ + +++  DID+FK IND +
Sbjct: 199 AEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFDHSRRHHREATLLIIDIDHFKSINDTW 258

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ I  L+ QL +       +GR GG+EFA    G+    A    + + + +   
Sbjct: 259 GHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEFAVIMCGTPADSAITAMSRVHERLNTL 318

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++     P + + IS G+A    +       +  AD ALY AK +GRNR   
Sbjct: 319 RLP--GAPQVMLRISVGVAPLTPQIGHYREWLKSADMALYKAKNAGRNRTEV 368


>gi|167827626|ref|ZP_02459097.1| hypothetical protein Bpseu9_28352 [Burkholderia pseudomallei 9]
 gi|226195020|ref|ZP_03790611.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei Pakistan 9]
 gi|225932825|gb|EEH28821.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei Pakistan 9]
          Length = 688

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 66/215 (30%), Positives = 101/215 (46%), Gaps = 15/215 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRIS----QLSRIDCLSGLLNHSAFIS 120
           L   ++L  ++I I  L+          L  S +R+S    +++  D L+ L N      
Sbjct: 214 LAATVALFTVAILIVALILSHFDVRTTLLAGSVSRLSGQIVRMAAFDTLTDLPNRHTLNE 273

Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            LG           KL+I+F D+D FK IND+ GHP GD+V+   S +L+        V 
Sbjct: 274 HLGRALAAARARGGKLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVA 333

Query: 174 RLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           RLGG+EF       SS+ EAA +A D+ + +   + N   G ++ +T S GIA      +
Sbjct: 334 RLGGDEFVVLLESVSSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGD 391

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              T++  AD A+Y AK+SGR     F    +   
Sbjct: 392 TADTLLRHADAAMYAAKRSGRCTYRFFEATMDEAA 426


>gi|149184737|ref|ZP_01863055.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Erythrobacter sp. SD-21]
 gi|148832057|gb|EDL50490.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Erythrobacter sp. SD-21]
          Length = 738

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 12/190 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDY 138
           + + + E F S    S+L++ D L+GL N       + S  +         +++  D+D 
Sbjct: 146 TATDITEEFRSEEEASRLAKFDSLTGLANRHRMEHRIDSTLQTFRSAKRAAALLMLDLDR 205

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILAN 197
           FKQ+ND  GH  GD+++  ++++L  V      +GRLGG+EF        ++ E   +A 
Sbjct: 206 FKQVNDTLGHAAGDQLLQQVAERLNQVISGRGEIGRLGGDEFQILIPDMDDRGELGEIAK 265

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            + +++  SQ          I  S GIA   +       +   AD ALY +K  GR +  
Sbjct: 266 KIIQML--SQPYSVEEGRCTIGCSVGIAIAPYDGVERDELTRAADLALYASKNGGRGQFR 323

Query: 257 CF-SDIENNT 265
            + +D+E+  
Sbjct: 324 FYAADLEHEA 333


>gi|95930028|ref|ZP_01312768.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133997|gb|EAT15656.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 1092

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 12/201 (5%)

Query: 73  IISITISLLLGYISGSILKE-LFISYNRISQLSRIDCLSGLLNHSAFISSLGS------- 124
           I+SI  +     +      E L     ++S L+  D L+ L N   F   L +       
Sbjct: 621 ILSIVAARAATELERLKADEALAEHRKQLSYLAFHDPLTQLPNRLRFTEVLEAAVGDAEG 680

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           +   LS++F D+D FK IND+ GH +GDK++  ++ +   +  +   + RLGG+EFA   
Sbjct: 681 HGRYLSLLFIDLDRFKNINDSLGHSIGDKLLQAVARRTGSLIDSADVLARLGGDEFAILL 740

Query: 185 LGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQ 242
               +    A  A  +   +  SQ       S+H++ S GI            +I  AD 
Sbjct: 741 FNCVTPVVGADTAQRVIDAL--SQPFQIDDYSLHVSASIGITVAPVDAREPDELIKCADI 798

Query: 243 ALYVAKKSGRNRVVCFSDIEN 263
           A++ AK +GRN    +    N
Sbjct: 799 AMFKAKDAGRNTYKFYERSMN 819


>gi|327540640|gb|EGF27214.1| sensory box/GGDEF family protein [Rhodopirellula baltica WH47]
          Length = 613

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 10/183 (5%)

Query: 90  LKEL-FISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQIN 143
           L+EL  +    + +++  D L+GL N   F   L      + ++  +++  D+D FK IN
Sbjct: 172 LEELVRVRTAELERVALHDGLTGLANRIKFNDRLKDSLANANSQPPAVLLIDLDQFKLIN 231

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKI 202
           D  GHP GD++I  +  +L  V G    V RLGG+EFA       +++    +A+ ++  
Sbjct: 232 DTLGHPAGDELIRIVGQRLSAVVGAAGLVARLGGDEFAVVLDHNPTQRTIESIADGIQSS 291

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +   +  +  G    +T S GI     +      +I  AD A+Y AK  GR+    F   
Sbjct: 292 VA--EPVLLDGVPFSVTASIGICGSPDENCDADELIRNADIAMYRAKADGRDCARYFEKG 349

Query: 262 ENN 264
            + 
Sbjct: 350 MDQ 352


>gi|325519720|gb|EGC99040.1| diguanylate cyclase [Burkholderia sp. TJI49]
          Length = 229

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 13/231 (5%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96
           + IA +  +A+  L  +  T F  + + L    S+    + + +L   ++  + + L  +
Sbjct: 1   LAIAMLACLADTTLNAMSTTRF-TVGWYLARVFSMFTPGVLVCVLAWEVT-MLYQRLSDA 58

Query: 97  YNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +  +   +  D L+G  N S F               E LS++  D+D+FK  ND +GH 
Sbjct: 59  HATLVHSAARDGLTGAFNRSHFNDRFHTLFLQARRQREPLSLLMVDVDHFKAYNDAYGHV 118

Query: 150 VGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            GD  +  ++  L  V   P   V R GGEEFA     +  + A I+A + R+ +    +
Sbjct: 119 KGDACLVAIAHALAGVVRRPTDLVARYGGEEFAIVLPNTDARGARIVAEEARQAVLRLDL 178

Query: 209 NISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
            + + P   +++S G A            +I  AD ALY AK  GR+RVV 
Sbjct: 179 VMPA-PEGRVSVSVGCATVSSDALSTSDALIEAADAALYRAKADGRDRVVV 228


>gi|114565894|ref|YP_753048.1| diguanylate cyclase/phosphodiesterase [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114336829|gb|ABI67677.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 319

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 23/205 (11%)

Query: 76  ITISLLLGYISG-----SILKELFISYNRISQL-------SRIDCLSGLLNHSAFISSL- 122
           + IS L G+ S       ++KE+   Y ++          +  D L+GL N   F   L 
Sbjct: 114 LQISDLTGHYSRVKQLKHMIKEIDSEYEQVRAAEKINRFKAFHDALTGLPNRYLFYDRLD 173

Query: 123 ------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     E L++VF D+D FK++NDN+GH  GD ++  ++++L  +      + RLG
Sbjct: 174 NAISMAQRNKEMLAVVFLDLDGFKEVNDNYGHEAGDHLLQVVAERLRELLRESDTLARLG 233

Query: 177 GEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPIS 234
           G+EF        SE +AA +A  +   + N  +    G  +++T S GI+      +   
Sbjct: 234 GDEFLFIFPQIKSEADAATIAKKILTALANPFMFW--GREVYLTASIGISLYPKDAKNSR 291

Query: 235 TIIYRADQALYVAKKSGRNRVVCFS 259
            +I +AD A+Y  K SG+N    ++
Sbjct: 292 NLINKADLAMYQVKNSGKNDYHFYN 316


>gi|328545051|ref|YP_004305160.1| Ammonium transporter [polymorphum gilvum SL003B-26A1]
 gi|326414793|gb|ADZ71856.1| Ammonium transporter, putative [Polymorphum gilvum SL003B-26A1]
          Length = 1049

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 10/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQ 141
            L+E   +  +I  L++ D L+ L N + F   L +  ++        +++  D+D FK 
Sbjct: 566 DLRERKKAEAQILHLAQHDPLTDLPNRAVFNKELEAAIDEARAAVASSALLLIDLDRFKD 625

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLR 200
           IND  GH VGD+VI   +++L         V RLGG+EFA          +A  +A+ L 
Sbjct: 626 INDLHGHLVGDRVIRVTAERLRQGSRRTDTVARLGGDEFAVIQRNIDFVTQAEDMAHRLL 685

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             + ++ I+  +G  +    S GI+          TI+  AD ALY AK  GRN    F 
Sbjct: 686 DRL-SAPIDCGNGLILRAGASIGISVIPAQGGGAETIVSNADIALYEAKHRGRNAYCLFK 744

Query: 260 DIENN 264
           D   +
Sbjct: 745 DGMGD 749


>gi|294140613|ref|YP_003556591.1| GGDEF domain-containing protein [Shewanella violacea DSS12]
 gi|293327082|dbj|BAJ01813.1| GGDEF domain protein [Shewanella violacea DSS12]
          Length = 341

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 64/209 (30%), Positives = 101/209 (48%), Gaps = 12/209 (5%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSI------LKELFISYNRISQLSRIDCLSGLL 113
            LE +L    SLV  S  I     Y +G +      +  L     +  Q+   D L+G+ 
Sbjct: 129 SLEKVLGIVRSLVKESDDIRSSTQYFTGQLSKAQQEINALKQQLEKSEQIMLYDALTGIF 188

Query: 114 NHSAFISSLG----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
           N  AF + L        + L ++  DID+FK+ NDN+GH +GD+V+  ++ +L       
Sbjct: 189 NRRAFDNDLRGSLSQSPDGLCLILADIDHFKEFNDNYGHQLGDQVLKVVAKRLQASCRDG 248

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH-ITISAGIAER 227
             + R GGEEFA     S    +  LA  +R+ +E   + +      I+ IT S G+A+ 
Sbjct: 249 AKLYRYGGEEFAVIIPKSQLGSSRHLAEAMRRGLEKITLKDRRKDVRINKITASFGVAQW 308

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVV 256
                 + +I +AD+ LY AK+ GRNRV+
Sbjct: 309 NKNLEGAELIEQADKLLYEAKRLGRNRVM 337


>gi|27378152|ref|NP_769681.1| hypothetical protein bll3041 [Bradyrhizobium japonicum USDA 110]
 gi|27351299|dbj|BAC48306.1| bll3041 [Bradyrhizobium japonicum USDA 110]
          Length = 385

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 103/243 (42%), Gaps = 15/243 (6%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           M       +  +A +   A      + +            ++   ++ I     LG    
Sbjct: 142 MTSAQAMITWTLAAIGLAAVFLASDLPIGMPVATRLQRTASMLCFVLVIGQCAFLGLFGA 201

Query: 88  SILK-------ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVF 133
           ++ K       EL  +Y RI +L+ +D L+G  N    +  L          +   +I  
Sbjct: 202 TLRKILYQRSIELKAAYQRIEELAELDELTGSYNRRCIMRLLDAEMDKSRRASTSCAIAL 261

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D+FK+IND  GHP+GD+V+   +  +          GR GGEEF      +  + A+
Sbjct: 262 IDLDWFKRINDAHGHPIGDEVLRTFAITIFANIRPTDCFGRYGGEEFLLLLPDTDGEAAS 321

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +   LR I+ +   +  S P + +TISAG+      +   T + RAD ALY AK  GRN
Sbjct: 322 RMLERLRSIVADLDWSAFS-PGMRVTISAGVVTLRDVDTADTFLARADSALYSAKAQGRN 380

Query: 254 RVV 256
           R+ 
Sbjct: 381 RIA 383


>gi|260596375|ref|YP_003208946.1| hypothetical protein CTU_05830 [Cronobacter turicensis z3032]
 gi|260215552|emb|CBA27750.1| hypothetical protein CTU_05830 [Cronobacter turicensis z3032]
          Length = 320

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 63/249 (25%), Positives = 113/249 (45%), Gaps = 19/249 (7%)

Query: 29  IYFSIFFSIFIATVIFI---ANIFLFYIGLTPF------YGLEYILVENLSLVIISITIS 79
           +  ++  ++FIA + FI        F + +T             +    L L  + + I 
Sbjct: 68  LLITLLGTLFIAALSFINMPGPFIAFCVPVTATILWLDKAQHPVLYAYTLILPFVGLVIR 127

Query: 80  LLLGYIS----GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIV 132
             +   S      ++++L      ++ LS +D L+GL N   F +   +      +L ++
Sbjct: 128 HFIASRSDISARKMVQKLIDEKATLNDLSMMDPLTGLCNRRGFQNRFDNLPPDAGQLFVL 187

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK  ND++GH +GD+ +  +S  +     +   V R GGEEF      + E  A
Sbjct: 188 LMDIDHFKAYNDHYGHMMGDQALTRVSAAIRDAVRSRDIVTRYGGEEFMVLLTEADEARA 247

Query: 193 AILANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
            + A  +R+ + + +I      S+  ++T+S GIA   +   I   + RAD+ALY AK  
Sbjct: 248 RLAAERIRQRVYDLRIPHMFNESVATNVTLSIGIAPLENG-DIDDALRRADEALYAAKDK 306

Query: 251 GRNRVVCFS 259
           GRN ++   
Sbjct: 307 GRNHILYHD 315


>gi|291614628|ref|YP_003524785.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans
           lithotrophicus ES-1]
 gi|291584740|gb|ADE12398.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans
           lithotrophicus ES-1]
          Length = 463

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 80/189 (42%), Gaps = 20/189 (10%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + +  +   +I++L+  D L+ L N       L           +  +++F D+D FK 
Sbjct: 272 DVTDRKMVEQKINRLAFYDSLTQLPNRRLLDDRLEQAIAASKRSGQYGAVMFLDLDNFKP 331

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA------LGSSEQEAAIL 195
           +NDN+GH  GD ++  ++ ++         V R GG+EF             S  EA  +
Sbjct: 332 LNDNYGHRAGDLLLIEVAKRITSCVREVDTVARFGGDEFVVVLSELAGNESESAAEARTI 391

Query: 196 ANDLRKIIENSQI---NISSGPSI----HITISAGIAERCHKEPISTIIYRADQALYVAK 248
           A  +   +        N      +    ++  S G+    H +    I+ RAD+++Y AK
Sbjct: 392 AKKIHAALAEPYWLSSNFKGTTQLITHNNVGASIGVVLFNHGDSAENILKRADKSMYQAK 451

Query: 249 KSGRNRVVC 257
            +GRN++  
Sbjct: 452 AAGRNQIHF 460


>gi|254422604|ref|ZP_05036322.1| GGDEF domain protein [Synechococcus sp. PCC 7335]
 gi|196190093|gb|EDX85057.1| GGDEF domain protein [Synechococcus sp. PCC 7335]
          Length = 768

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 55/194 (28%), Positives = 85/194 (43%), Gaps = 21/194 (10%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVF 133
           L+G I   + ++       + +L+ ID L+GL        +L             L +  
Sbjct: 578 LIGRILNRLERQRL-----LRKLAEIDSLTGLSRRRQSAETLERLLRLSVRQGVPLCMAL 632

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D+FKQIND +GH VGD+V+   ++ L   F     V R GGEEF       S++ + 
Sbjct: 633 LDLDHFKQINDRYGHDVGDQVLKVFAEYLRNSFRGEDVVARWGGEEFVVGLYNVSKERSL 692

Query: 194 ILANDLRKIIENSQINISSGP--------SIHITISAG-IAERCHKEPISTIIYRADQAL 244
              N LR+          S             +++S G +      E +  +  RADQAL
Sbjct: 693 QRLNTLRESFGQHIFQAKSSAFYQSDLLLEFQVSLSGGMVTAPADGETVEMLYRRADQAL 752

Query: 245 YVAKKSGRNRVVCF 258
           Y AK +GRN++  F
Sbjct: 753 YRAKAAGRNQICIF 766


>gi|167622481|ref|YP_001672775.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella halifaxensis HAW-EB4]
 gi|167352503|gb|ABZ75116.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella halifaxensis HAW-EB4]
          Length = 694

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 83/191 (43%), Gaps = 11/191 (5%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFD 135
             IS     E   +   I + +  D L+ L N           + S     + L+++F D
Sbjct: 229 AVISFYDNSERREAEELIRRQAHYDTLTDLPNRFLALKRLEQLVESSERSGKMLAVIFLD 288

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAI 194
           +D FK+IND+ GH  GD ++   S++L+        VGRLGG+EF     G SS  +A  
Sbjct: 289 LDDFKKINDSLGHEAGDLLLITASERLLKTTRAEDTVGRLGGDEFIILLDGLSSANDAQP 348

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           +A +L       +        + +T S GIA      E  S ++  AD A+Y  K  GRN
Sbjct: 349 IAENLIGGFR--KPFYIDNRQLILTASIGIAIYPNDGETPSELLRNADSAMYHTKSIGRN 406

Query: 254 RVVCFSDIENN 264
               F+   N 
Sbjct: 407 TYSYFTHAMNK 417


>gi|220908932|ref|YP_002484243.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7425]
 gi|219865543|gb|ACL45882.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Cyanothece sp. PCC 7425]
          Length = 1051

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 20/218 (9%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN-------- 114
           YI  E L+  I   T  ++    +   + E      ++   +  D L+GL N        
Sbjct: 577 YIWFETLTKPIFGQTGQIVQLQTTSRDVTERIQVQEQLKYDALHDALTGLPNRLLLMERL 636

Query: 115 ----HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
               H A    L  Y+   +++F D+D FK IND+ GH  GD+++  ++++L        
Sbjct: 637 ELAIHRA--QRLPGYH--FAVLFLDLDRFKIINDSLGHLAGDQLLTAVAEKLCSTLRDID 692

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHITISAGIAERCH 229
            V RLGG+EF         ++   +   + +I    QI I  +G  ++IT S GI     
Sbjct: 693 LVARLGGDEFVILLEEV--KDIQEIIKFVDEIFAGLQIPILIAGCEVYITASIGIVFSDD 750

Query: 230 K-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           K    S ++  AD A+Y AK  G++R   F+   +   
Sbjct: 751 KPAQASHLLRNADIAMYRAKAKGKDRYEIFNMEMHAQA 788


>gi|194446449|ref|YP_002039624.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194405112|gb|ACF65334.1| AdrA protein [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 370

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 104/232 (44%), Gaps = 12/232 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            F++ +  ++    + L   GL P       L   LSL +I +   LL  ++S     +L
Sbjct: 141 LFTVGMGLLLASCLVTLQLTGL-PVAMRSSSLEVTLSLPVIML-YPLLFAWVSYQTAIKL 198

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
                R+  +S  D ++G+ N   +             ++ + +++  DID+FK IND +
Sbjct: 199 AEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFDHSRRHHREATLLIIDIDHFKSINDTW 258

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ I  L+ QL +       +GR GG+EFA    G+    A    + + + +   
Sbjct: 259 GHDVGDEAIIALTRQLQLTLRGSDIIGRFGGDEFAVIMCGTPADSAITAMSRVHERLNTL 318

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++     P + + IS G+A    +       +  AD ALY AK +GRNR   
Sbjct: 319 RLP--GAPQVMLRISVGVAPLTPQIGHYREWLKSADMALYKAKNAGRNRTEV 368


>gi|158338942|ref|YP_001520119.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Acaryochloris marina
           MBIC11017]
 gi|158309183|gb|ABW30800.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Acaryochloris marina MBIC11017]
          Length = 783

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 21/197 (10%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNE-----------KL 129
            SI  E   +  ++   +  D L+GL +   FI  L         +              
Sbjct: 320 ASIALEGHRTAEQLKHKALFDELTGLPSRDYFIEELQYKLHQLQQHRLAEYSVSYDPCHF 379

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS- 188
           +++F D+D+FK +ND+ GH VGD+++  L+ QL     +   + RLGG+EFA    G   
Sbjct: 380 AVLFLDVDHFKLVNDSLGHSVGDQLLVALARQLSESLRSHDLLARLGGDEFAVLLDGVDN 439

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247
            QEA  +   +++ +   +        +  ++S G+    +  E    ++  AD A+Y A
Sbjct: 440 HQEAHEIVQRIQRSLA--KPLQVDHQEVFTSVSIGMTHSSNSYEHTEELLRDADTAMYQA 497

Query: 248 KKSGRNRVVCFSDIENN 264
           K  G+   V F ++ + 
Sbjct: 498 KDQGQGGYVVFDEVMHK 514


>gi|59713979|ref|YP_206754.1| GGDEF domain-containing protein [Vibrio fischeri ES114]
 gi|59482227|gb|AAW87866.1| GGDEF domain protein [Vibrio fischeri ES114]
          Length = 320

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 74/201 (36%), Positives = 110/201 (54%), Gaps = 16/201 (7%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--- 122
           V ++SL+I  +T       I+ + L  L  S +++S LS+ID L+ L N + + S L   
Sbjct: 122 VSHISLIIHDVT------EIAKNTLH-LENSNHQLSTLSKIDGLTQLYNRAYWESCLKKE 174

Query: 123 ---GSYNEKLS-IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                  E++S IV FDID+FK++NDNFGH VGD VI   ++ L          GR GGE
Sbjct: 175 FNEARAAERVSSIVMFDIDHFKKVNDNFGHTVGDDVIRDAAELLRKTSRNTDICGRYGGE 234

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TII 237
           EF      ++ ++A      LRK IENS I+  +   IH  +S GI E  ++ P   + +
Sbjct: 235 EFTVILPYTNAEQAFYFTERLRKRIENSTISTEN-EEIHYRVSLGICELSNEHPDHLSWL 293

Query: 238 YRADQALYVAKKSGRNRVVCF 258
             AD+ALY +K++GRN+   F
Sbjct: 294 EAADKALYYSKENGRNQSNVF 314


>gi|119776713|ref|YP_929453.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B]
 gi|119769213|gb|ABM01784.1| GGDEF domain protein protein [Shewanella amazonensis SB2B]
          Length = 312

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 57/182 (31%), Positives = 86/182 (47%), Gaps = 13/182 (7%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           I+   + E  +   ++++LS  D L+GL N   F S L             L+++  D+D
Sbjct: 128 IAHVNITERKLLELKVAKLSMHDPLTGLANRRLFNSFLHNEWRRSQREQVPLTLILLDLD 187

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           +FK  ND+FGH VGD+ +  +S  L+           R GG+EFA     ++      LA
Sbjct: 188 HFKSCNDHFGHLVGDEHLQQVSQVLLSVCQRPTDLACRFGGDEFALVLGNTNAAAGLGLA 247

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRN 253
             +R  IEN  I I  G  + +T S GIA     + +    T+   AD ALY AK +G+N
Sbjct: 248 EKVRSTIENLNIKIEDG--LRLTSSLGIATLEPGQQMEQENTLCSLADSALYQAKAAGKN 305

Query: 254 RV 255
             
Sbjct: 306 CC 307


>gi|330965335|gb|EGH65595.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 703

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 97/214 (45%), Gaps = 13/214 (6%)

Query: 64  ILVENLSLVIISITISLLLGYI---SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +LV +LS++ I++   +L  ++   +  +   L  + + ++  +  D L+GL N +    
Sbjct: 220 VLVASLSVLSITLFCCILDSHLETRTAVLANSLVEANHELTHRALHDSLTGLPNRTLLTD 279

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            +     K        +++F D+D FK +ND FGH  GD ++  ++ +L         + 
Sbjct: 280 RIEQTMNKVRENGGCFALMFMDLDGFKPVNDAFGHHTGDLLLRHVALRLRQNLHLHDTLA 339

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           R+GG+EF        +Q+A  +A  +R++ E           + I++S GI     +   
Sbjct: 340 RVGGDEFVLLVELQDQQDALAVA--MRQVNEIGNPFTIGEHQLQISLSIGICMYPGNGTT 397

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              ++  AD A+Y  K +G+N    F    N+  
Sbjct: 398 QHELLVNADAAMYHTKAAGKNGYSFFDVSMNSNA 431


>gi|293604454|ref|ZP_06686861.1| GGDEF domain protein [Achromobacter piechaudii ATCC 43553]
 gi|292817331|gb|EFF76405.1| GGDEF domain protein [Achromobacter piechaudii ATCC 43553]
          Length = 488

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 15/207 (7%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFIS-----YNRISQLSRIDCLSGLLNHSAFIS 120
            E  + +I+ +T++L    ++  +L    +        ++ + ++ D L+G+ N   F  
Sbjct: 281 WERRAALIVPVTLALFFSVMAQIVLFRREMRWRRAFEQQLQERAQTDGLTGIANRRTFDE 340

Query: 121 SLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFV 172
            L             +S++F D DYFK+ ND +GH  GD+++  L+  L      P    
Sbjct: 341 VLEREWAVARRDGTPISLLFLDADYFKRYNDRYGHQEGDELLKMLALALKKKARRPRDLA 400

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHK 230
            R GGEEF     G+ +++A  +A  +R+ I    +         +T+S G+A       
Sbjct: 401 ARYGGEEFVVLLPGTDKRQAVAIAETIRRAIAELAVPHEDNEGGIVTVSIGVATAVPTGT 460

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVC 257
           + +S ++  AD A+Y AKK+GRNRV  
Sbjct: 461 DTLSRLVEAADAAVYQAKKAGRNRVAA 487


>gi|289670140|ref|ZP_06491215.1| sensor histidine kinase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 551

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 59/193 (30%), Positives = 89/193 (46%), Gaps = 11/193 (5%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE----- 127
           + S+T++          L  L +    + Q S  D L+GL N      +L          
Sbjct: 352 LASLTVAEAAAEQLSLALHNLRL-RETLRQQSIRDPLTGLYNRRYLEETLNHELARCTRR 410

Query: 128 --KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              LS++  D+D+F+Q ND  GH  GD+V+A +   L+          R GGEE      
Sbjct: 411 VLPLSVLMLDVDHFRQFNDLHGHSGGDRVLAAIGALLLSQTRGEEICCRYGGEELTIILP 470

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERC-HKEPISTIIYRADQA 243
                 A ++A  LR  IE  Q+ +  G S+  +T S G A    H   ++ ++ RAD+A
Sbjct: 471 EVDLLTACMMAEKLRVGIEALQV-MGDGVSLPKVTASFGAASFPDHAGTVAQLLQRADEA 529

Query: 244 LYVAKKSGRNRVV 256
           LY AK+ GRN+VV
Sbjct: 530 LYRAKQGGRNQVV 542


>gi|262401649|ref|ZP_06078215.1| hypothetical protein VOA_003199 [Vibrio sp. RC586]
 gi|262352066|gb|EEZ01196.1| hypothetical protein VOA_003199 [Vibrio sp. RC586]
          Length = 684

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+GL N   F   L    +    L +++ DID FK IND+ GH +GDKVI  ++ 
Sbjct: 256 AHIDNLTGLYNRHGFTKRLEQCIQNETPLVLLYLDIDNFKNINDSLGHHIGDKVIKEVAA 315

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHIT 219
           +L  +      +G LGG+EF           +  +LA+ +  +I  +Q       S  + 
Sbjct: 316 RLKRLLPQQAILGHLGGDEFGLILPEPEHNRSEEMLADRIISLI--NQPFDLHHFSKRLA 373

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +           ++  AD A+Y AK+ GRNR++ F+D  N   
Sbjct: 374 CSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEA 421


>gi|224371248|ref|YP_002605412.1| hypothetical protein HRM2_41920 [Desulfobacterium autotrophicum
           HRM2]
 gi|223693965|gb|ACN17248.1| conserved hypothetical protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 938

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 9/181 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
           G  + +   +  ++  L+  D L+ L N   F       I     Y+E++++ + D+D F
Sbjct: 497 GLDITDRKRAEEQMVWLATHDHLTNLSNLRHFNHEFERIIDQAKRYDEQVALFYLDLDQF 556

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND  GH  GD V+  ++  L  +      + R+GG+EF      ++ +    LA  +
Sbjct: 557 KIINDTQGHHRGDVVLQTVAMTLKRITRKSDLICRIGGDEFTLLMPNATGKAVLTLAKKI 616

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + +  + +    G +  I+ S GIA    H   I  ++  AD A+Y AKKSG  +   +
Sbjct: 617 NQALGKTPVE-GMGHNFKISASIGIAIFPQHGTSIHDLLSNADLAMYHAKKSGYGQFHVY 675

Query: 259 S 259
           S
Sbjct: 676 S 676


>gi|207742592|ref|YP_002258984.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           IPO1609]
 gi|206593986|emb|CAQ60913.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           IPO1609]
          Length = 534

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 99/191 (51%), Gaps = 9/191 (4%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLG 123
           LV+ S+        ++  + + L  + + ++  +  D L+G+L    F++          
Sbjct: 342 LVVWSLLRERQHHRVTRHLNQRLQRTNSALANEAHFDHLTGVLTRRRFLALFETVLTRAH 401

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
              E L +V  D+D+FK+IND +GH VGD  +   +     V  +   +GRLGGEEFA  
Sbjct: 402 VRGESLVLVLADLDHFKRINDTWGHAVGDLALQRFASLATGVMRSSDLIGRLGGEEFAVV 461

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              ++ ++AA +   LR I+  +  ++ SG  + +T+S G+      +  S ++ RAD A
Sbjct: 462 MSSTTLEDAAGVVERLRAIVAEADDSLPSG--LTMTVSLGMTACRSGDTASEMLRRADLA 519

Query: 244 LYVAKKSGRNR 254
           LY AK+SGRNR
Sbjct: 520 LYRAKESGRNR 530


>gi|52842848|ref|YP_096647.1| sensory box/GGDEF family protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629959|gb|AAU28700.1| sensory box/GGDEF family protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 835

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 89/183 (48%), Gaps = 10/183 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           I G+ + +L  + N +  L+R D L+ + N   F   L           + L+++  D+D
Sbjct: 390 IYGTDITQLKNTQNAMLNLTRRDTLTQIANRQYFEEKLIEKIYEHHLKEKSLALLLIDLD 449

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND  GHP GDK++  +++++        F+ RLGG+EF       +   A  +A 
Sbjct: 450 NFKIVNDTLGHPTGDKLLMAVTNRMTRCLRANDFIARLGGDEFIVLLDQCNTDTAVKVAE 509

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256
            +  ++   +        + IT S GIA       I S ++  AD A+Y++KK+G+N+  
Sbjct: 510 KIINVL--GKPFQFDEYHMTITASIGIAIYPETSEIASDLLKYADIAMYLSKKTGKNKCT 567

Query: 257 CFS 259
            FS
Sbjct: 568 VFS 570


>gi|85708036|ref|ZP_01039102.1| putative diguanylate cyclase (GGDEF) [Erythrobacter sp. NAP1]
 gi|85689570|gb|EAQ29573.1| putative diguanylate cyclase (GGDEF) [Erythrobacter sp. NAP1]
          Length = 408

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 105/230 (45%), Gaps = 12/230 (5%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
            I+   ++         I L     L  ++        + +    +L  + G IL  L +
Sbjct: 147 VIWTMAMMTAVGFLRPVIALMAEGDLTGLISRTSEFHAVQVIAMTVLPVVLGMILLALVV 206

Query: 96  SYNRISQLS--RIDCLSGLLNHSAFISS----LGSYNE---KLSIVFFDIDYFKQINDNF 146
           +     Q++  RID L+GL N +AF       L    E    +S++  DID+FKQ+ND +
Sbjct: 207 TDEWEDQIASGRIDALTGLPNRAAFEEQVDELLARAREERIPVSLLVGDIDHFKQVNDTW 266

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGDKVI+   D +          GR+GGEEF        EQ A  LA  LR    + 
Sbjct: 267 GHSVGDKVISAFGDIMARKIRPGDVAGRIGGEEFCVLVWNCHEQGAVSLAERLRLSFASE 326

Query: 207 QIN-ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I  + +  S   T S GIAE    E  +    RAD ALY AK+SGRNRV
Sbjct: 327 AIEGLPTSESF--TASFGIAEWQRGEDYAQCFRRADGALYSAKRSGRNRV 374


>gi|119775516|ref|YP_928256.1| GGDEF family protein [Shewanella amazonensis SB2B]
 gi|119768016|gb|ABM00587.1| GGDEF family protein [Shewanella amazonensis SB2B]
          Length = 649

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 66/212 (31%), Positives = 102/212 (48%), Gaps = 14/212 (6%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH------ 115
           E I  E+   ++IS  ++ +  ++S  +   L    N+  +L++ D L+G  N       
Sbjct: 371 ETISREHSGSLMISTVLAGITLFLSVFLATGL-SQRNKYMRLAQRDGLTGTYNRATGQEK 429

Query: 116 --SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
             +A I  +    E  + V  D+D FK+IND FGH  GD  +  + + +         + 
Sbjct: 430 GENALIGCMAR-GEPTAAVLLDLDNFKRINDEFGHATGDWTLKKVVEVIRPQLADDHILC 488

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-P 232
           R GGEEF     G S  +A  +A   R+ I     + S G S  +T S G+ E  H +  
Sbjct: 489 RFGGEEFMLILPGLSGAQAVEVAERCREAIAGVNTHYS-GHSFKLTASFGVTEWQHGDLS 547

Query: 233 ISTIIYRADQALYVAKKSGRNRVVC--FSDIE 262
           +  +I RAD ALY AK  GRNRVV   F+++E
Sbjct: 548 LDPMIKRADLALYRAKHLGRNRVVSYGFAELE 579


>gi|118588079|ref|ZP_01545489.1| putative kinase/esterase [Stappia aggregata IAM 12614]
 gi|118439701|gb|EAV46332.1| putative kinase/esterase [Stappia aggregata IAM 12614]
          Length = 486

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 61/199 (30%), Positives = 97/199 (48%), Gaps = 9/199 (4%)

Query: 71  LVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
           +VI+S+ +  L   + +  G +   L  S ++   L+  D L+GL N   F   L S   
Sbjct: 259 IVILSLALGALAFGIAWRIGQLTTSLQASEHQNRYLALHDTLTGLANRLQFNRVLESSVK 318

Query: 126 ---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
              ++  +++  D+D FK +ND FGH  GD VI  ++++L    G P  V R+GG+EF  
Sbjct: 319 NLPDKPFAVIHCDLDKFKAVNDTFGHAAGDIVIRTMAERLTTAVGKPGLVCRIGGDEFMV 378

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII-YRAD 241
              GS  +E  I  +          + ISSG    I +S GIA        + ++  R+D
Sbjct: 379 IYRGSVTREGLIDLSRALVAAGELPVPISSGEIAQIGLSVGIAIAPKDGSTAELLVTRSD 438

Query: 242 QALYVAKKSGRNRVVCFSD 260
            ALY +KK GR R   +++
Sbjct: 439 AALYQSKKLGRGRYSFYAE 457


>gi|107099266|ref|ZP_01363184.1| hypothetical protein PaerPA_01000278 [Pseudomonas aeruginosa PACS2]
          Length = 760

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 10/180 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFK 140
           S L  +  S N +  L+  D L+GL N       +    E         +++  D+D+FK
Sbjct: 315 SDLSSIKRSENELDFLAHHDSLTGLPNRVLLRERIEQALENGKDRTVAGALLLIDLDHFK 374

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND+ GH  GD ++  +S +L         + RLGG+EFA        +  A L+  + 
Sbjct: 375 HINDSLGHTTGDMLLKEVSKRLQHQLDERCLLSRLGGDEFAILVENDDPEAVARLSQRIL 434

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
               N+  +I   P I+I+ S G++        +  ++  AD AL+ AK SGRN    ++
Sbjct: 435 DGF-NAPFDIHCQP-IYISASLGVSLYPEDASDVDHLMQHADAALFQAKDSGRNAYAFYT 492


>gi|167625852|ref|YP_001676146.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167355874|gb|ABZ78487.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 265

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 103/235 (43%), Gaps = 24/235 (10%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG---------YISGSILKELF 94
           +I    +  + +  + G  ++L++  + ++  +  ++LLG          +S S + ++ 
Sbjct: 37  WIGLFIMIQLFIFGYLGFIWMLLDRNAGMLEIVVATILLGGGGFVLTITMMSRSTITQML 96

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVG 151
               +    +  D L+ L N   F  +L       + +  +  DI+ FK IND +GH +G
Sbjct: 97  TVLEQKEFQAHHDALTNLPNRIYFYETLELWIVQPQPMCCMMIDINNFKIINDTYGHAIG 156

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL----RKIIENSQ 207
           D V+  ++ +L+ V      V R+GG+EF      +  ++A   A  +    R+ I    
Sbjct: 157 DYVLKEVAKRLLSVSPQEGLVARIGGDEFILLLPNTELEQALKAAQAIQTRFRQKIACEP 216

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           + +S      + +S GIA    H +    ++  AD A+Y AK    + +  F D 
Sbjct: 217 VPLS------VGLSIGIALFPAHGDNRKALLRHADIAMYQAKHRD-DHIQVFRDE 264


>gi|78356213|ref|YP_387662.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78218618|gb|ABB37967.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 780

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 11/173 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + E   S   I  L+  D L+GL N   F+  L            + +++F D++ FK+
Sbjct: 604 DITEQKRSEEHIRHLAMHDGLTGLPNRRLFMDRLRRSVAMSKRNGVRFAVLFIDLNDFKE 663

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           IND  GH  GD V+  ++++L           R+GG+EF        S ++ A  +  + 
Sbjct: 664 INDTLGHEAGDHVLRTVAERLRQSLREVDTCARIGGDEFIVLLHDIRSNEDLAHASERVS 723

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252
             I ++ IN++    + ++ S GIA        +  II  AD A+Y  K++ R
Sbjct: 724 AAI-STPINLNGTVRV-VSGSIGIAVCPDDATDVDQIISHADHAMYRCKRNRR 774


>gi|21230829|ref|NP_636746.1| hypothetical protein XCC1372 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769172|ref|YP_243934.1| hypothetical protein XC_2866 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21112432|gb|AAM40670.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574504|gb|AAY49914.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 221

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 57/182 (31%), Positives = 84/182 (46%), Gaps = 14/182 (7%)

Query: 95  ISYNRISQLSR---IDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144
            S NR+  L+     D L+G+ N     ++L    E        LSI F D+D FK++ND
Sbjct: 30  ESENRMRHLAEQASRDALTGVFNRHQLGTALAHEFELATRQAWPLSIAFIDLDDFKRVND 89

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD+V+   +  L  +  T   V R GGEEF      ++ + A ++   +     
Sbjct: 90  AHGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEFLVILPNTTAEAALMVIERILAETA 149

Query: 205 NSQINISSGPSIHITISAGIAERCHK----EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            + +    G  +HIT SAG+A         E I  ++  AD  LY +K  GRNRV  +  
Sbjct: 150 RTPMAQLPGGPLHITFSAGLATHGGGDRQFESIEHLLQAADTTLYRSKHRGRNRVTAYDA 209

Query: 261 IE 262
            E
Sbjct: 210 TE 211


>gi|254237481|ref|ZP_04930804.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126169412|gb|EAZ54923.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 760

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 10/180 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFK 140
           S L  +  S N +  L+  D L+GL N       +    E         +++  D+D+FK
Sbjct: 315 SDLSSIKRSENELDFLAHHDSLTGLPNRVLLRERIEQALENGKDRTVAGALLLIDLDHFK 374

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND+ GH  GD ++  +S +L         + RLGG+EFA        +  A L+  + 
Sbjct: 375 HINDSLGHTTGDMLLKEVSKRLQHQLDERCLLSRLGGDEFAILVENDDPEAVARLSQRIL 434

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
               N+  +I   P I+I+ S G++        +  ++  AD AL+ AK SGRN    ++
Sbjct: 435 DGF-NAPFDIHCQP-IYISASLGVSLYPEDASDVDHLMQHADAALFQAKDSGRNAYAFYT 492


>gi|315180370|gb|ADT87284.1| GGDEF family protein [Vibrio furnissii NCTC 11218]
          Length = 382

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 85/183 (46%), Gaps = 11/183 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIN 143
           ++L  +  ++  LS  D L+ L N    +  L +Y          L  +  D DYFKQ+N
Sbjct: 193 QQLMQANRQLEALSMTDSLTALPNRRKAMRQLEAYWNESQQQGLPLVCIMIDADYFKQVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GD+V+  L+  L   F +   V RLGG+EF      +       +A   R+ +
Sbjct: 253 DSCGHDAGDRVLMALAYTLKHAFRSDDLVCRLGGDEFLVICPNTDLDGGVHIAELTRQQV 312

Query: 204 ENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC--FSD 260
            N  +     P    +IS G+AE          +I  AD A+Y AKK+G+NRV    F +
Sbjct: 313 NNLLVPTGMEPWRG-SISVGVAESHGFMNDHHALIKLADTAVYRAKKAGKNRVCVAQFEE 371

Query: 261 IEN 263
           + +
Sbjct: 372 VMS 374


>gi|315127663|ref|YP_004069666.1| two-component response regulator [Pseudoalteromonas sp. SM9913]
 gi|315016177|gb|ADT69515.1| two-component response regulator [Pseudoalteromonas sp. SM9913]
          Length = 299

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 11/174 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145
           +    + +  L+ ID L+ + N      +L             L ++  DID+FK+ ND 
Sbjct: 123 IKQKNDLLEMLASIDGLTEIPNRRYLDENLEREWRRSKRNYSPLCVLLIDIDHFKRYNDC 182

Query: 146 FGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD+ +  ++  L         FV R GGEEF A    +++Q A   AN LR  + 
Sbjct: 183 YGHRAGDECLKTVAKTLAAQCERGSDFVARYGGEEFVAVLPETNQQGAIAFANKLRNAVN 242

Query: 205 NSQINISSG-PSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255
           +  I  ++   + H+TIS GIA     +  +   ++  AD  LY AKK GRN++
Sbjct: 243 DLNIEHNASLNATHVTISIGIASSESSQAYTEKALLEEADSGLYNAKKLGRNQI 296


>gi|310828979|ref|YP_003961336.1| Serine/Threonine protein kinase and Signal Transduction Histidine
            Kinase (STHK) with GAF sensor [Eubacterium limosum
            KIST612]
 gi|308740713|gb|ADO38373.1| Serine/Threonine protein kinase and Signal Transduction Histidine
            Kinase (STHK) with GAF sensor [Eubacterium limosum
            KIST612]
          Length = 1665

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 54/217 (24%), Positives = 96/217 (44%), Gaps = 25/217 (11%)

Query: 67   ENLSLVIISITISLLLGYISGSI--------------LKELFISYNRISQLSRIDCLSGL 112
            ENL  +   + ISL   Y+   +              +K    +  ++++++  D L+GL
Sbjct: 1442 ENLIPIAAQLAISLENAYLYEHLRFLVDERTKALQEEIKVRKRAEEKLARMANYDALTGL 1501

Query: 113  LNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
             N   F   L             L++++ D+D FK+IND FGH  GD V+   + +L+  
Sbjct: 1502 PNRRLFHKILSRLLLEADTSGYLLAVLYMDLDGFKEINDTFGHDKGDLVLEETARRLIRA 1561

Query: 166  FGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                  V R+GG+EF       ++++E   +   +   I      IS    + +T S G+
Sbjct: 1562 VRGSDIVSRIGGDEFVLLLDRITTDEEIRHVCERILSEIRQ-PFQISENLVVELTASIGV 1620

Query: 225  AERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +      +    ++ RADQA+Y  KKS +N    F++
Sbjct: 1621 SVYPKDAQDEKELLSRADQAMYRIKKSDKN-YYSFTE 1656


>gi|241765463|ref|ZP_04763430.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
 gi|241364773|gb|EER59762.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
          Length = 346

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 80/191 (41%), Gaps = 28/191 (14%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----------------------- 130
           + +Y  +   S  D L+GL N   F      +                            
Sbjct: 143 YQNYQSLLDYSERDALTGLFNRKTFDEQFSRHTAPAVALRAQGGAAGDDGAACCEPIEQW 202

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +   DID+FKQ+ND FGH  GD+V+  +++ L   F +   + R GGEEF      +   
Sbjct: 203 LAVVDIDHFKQVNDRFGHLYGDEVLILVANILRNSFRSHDRIFRFGGEEFVVLLRSTDLS 262

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
            A  + N  R  ++             +T+S G        P+  I+ +ADQALY AK++
Sbjct: 263 TAHKVFNRFRLAVQEYPFP----QVGQVTVSVGFVSTSKGSPVE-ILGQADQALYHAKEN 317

Query: 251 GRNRVVCFSDI 261
           GRN+V  + D+
Sbjct: 318 GRNQVCFYDDL 328


>gi|213967727|ref|ZP_03395874.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
 gi|213927503|gb|EEB61051.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
          Length = 440

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 119/285 (41%), Gaps = 36/285 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL------FYIG 54
           + +S    L +WL  +    +    ++M    + +++F+ +   +   +L          
Sbjct: 149 LEQSYPVELQVWLA-DIRWPALHG-SWMSLIQLSYAMFLLSFAVLIWQYLEKPRPLHAAQ 206

Query: 55  LTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           +    GL + L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL 
Sbjct: 207 IVGLLGLFWALPKTFILPFTLNILCSQVMLMIAAAVAHEAY-------QMAFRDELTGLP 259

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A    +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        
Sbjct: 260 GRRALNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGRAY 319

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-------------------P 214
           R GGEEFA      +  E       +R+ I N  I + +                     
Sbjct: 320 RYGGEEFAIVFAAKTIDECMPHLEAIRETIANYAIQLRNKDSRPQDDQQGRQRRSGAHEA 379

Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S+ +T+S G+AER         ++  ADQALY AK +GRN VV +
Sbjct: 380 SVSVTVSIGVAERQPEHRTPEEVLKSADQALYAAKGAGRNCVVAY 424


>gi|254459177|ref|ZP_05072599.1| sensory box/ggdef domain/eal domain protein [Campylobacterales
           bacterium GD 1]
 gi|207084070|gb|EDZ61360.1| sensory box/ggdef domain/eal domain protein [Campylobacterales
           bacterium GD 1]
          Length = 760

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 16/186 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
              +  +I Q +  D L+GL N           I+ L  +N   +I+F DID FK IND+
Sbjct: 319 RIQADKKIRQQAFYDHLTGLANRLTLNDRLEQQIARLARHNRFGAILFIDIDNFKTINDS 378

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE------QEAAILANDL 199
            GH +GD ++   + +   +      V RLGG+EF       S+      + +  +A  L
Sbjct: 379 LGHHIGDTLLKTFAQRASSIMRKEDTVARLGGDEFVILLSDLSDNKNHALEYSHNVARKL 438

Query: 200 RKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            K+++   I +    S+++T+S GI      +E I+ I+  AD A+Y AK+ GRN    F
Sbjct: 439 HKLMKE-PIEVEE-HSLYVTLSIGITTISEEEEDINVILKHADIAMYKAKQQGRNTTCFF 496

Query: 259 SDIENN 264
               + 
Sbjct: 497 EQGMSK 502


>gi|197337034|ref|YP_002158471.1| sensor protein [Vibrio fischeri MJ11]
 gi|197314286|gb|ACH63735.1| sensor protein [Vibrio fischeri MJ11]
          Length = 320

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 74/201 (36%), Positives = 110/201 (54%), Gaps = 16/201 (7%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--- 122
           V ++SL+I  +T       I+ + L  L  S +++S LS+ID L+ L N + + S L   
Sbjct: 122 VSHISLIIHDVT------EIAKNTLH-LENSNHQLSTLSKIDGLTQLYNRAYWESCLKKE 174

Query: 123 ---GSYNEKLS-IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                  E++S IV FDID+FK++NDNFGH VGD VI   ++ L          GR GGE
Sbjct: 175 FNEARAAERVSSIVMFDIDHFKKVNDNFGHTVGDDVIRDAAELLRKTSRNTDICGRYGGE 234

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TII 237
           EF      ++ ++A      LRK IENS I+  +   IH  +S GI E  ++ P   + +
Sbjct: 235 EFTVILPYTNAEQAFYFTERLRKRIENSTISTEN-EEIHYRVSLGICELSNEHPDHLSWL 293

Query: 238 YRADQALYVAKKSGRNRVVCF 258
             AD+ALY +K++GRN+   F
Sbjct: 294 EAADKALYYSKENGRNQSNVF 314


>gi|190573464|ref|YP_001971309.1| putative GGDEF domain signalling protein [Stenotrophomonas
           maltophilia K279a]
 gi|190011386|emb|CAQ45001.1| putative GGDEF domain signalling protein [Stenotrophomonas
           maltophilia K279a]
          Length = 554

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 110/226 (48%), Gaps = 14/226 (6%)

Query: 40  ATVIFIANIFLFYIGLT--PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           A +  +A + +  I       + LEY  VE L L +  +   ++  Y     L  L    
Sbjct: 321 AGLAALAPMLVLIIADACGAAWLLEY-RVEALQLAVTWLL--MMAAYALNQRLGRLRQQR 377

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPV 150
           + + QL+  D L+GL N  A +  L  + E        L I F DID FK IND  GH V
Sbjct: 378 DELRQLAETDGLTGLPNRRAGLQQLARHLERVDRERGPLVIGFLDIDLFKDINDRHGHAV 437

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  ++  L     +   V R+GGEEF     G   + A+   + LR+ I  +   +
Sbjct: 438 GDQVLVAVARALRAAVRSQDEVVRMGGEEFLLLMPGMPREAASARLDRLRQRITEAGQAL 497

Query: 211 SSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
              P + +T S G+A+    E  ++ ++ RAD A+YVAK++GRNRV
Sbjct: 498 QV-PGLEVTASIGLAQWRPGEDDLAGLLRRADHAMYVAKRAGRNRV 542


>gi|319945119|ref|ZP_08019381.1| diguanylate cyclase [Lautropia mirabilis ATCC 51599]
 gi|319741689|gb|EFV94114.1| diguanylate cyclase [Lautropia mirabilis ATCC 51599]
          Length = 619

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 22/191 (11%)

Query: 86  SGSILKELFISY-----------NRISQLSRIDCLSGLLNHSAFISSLG-------SYNE 127
           +   ++ LF S              + Q S  D L+ L N   F   L            
Sbjct: 427 ANQKIRRLFASNVAQFLANLTLRQTLEQASLRDPLTNLFNRRYFNEQLAIEFERASRARS 486

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            L++   DID+FK++ND +GH  GD+V+  +S+ LV        V R GGEEF     G 
Sbjct: 487 PLALQTVDIDHFKRLNDRYGHEAGDRVLVQVSEVLVQNARAGDIVCRWGGEEFLILMPGL 546

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYV 246
           +   A   A+++R+ ++     +   P   +++S G+A    H      ++  +D+ALY 
Sbjct: 547 NGTSAKRRADEIRRKVQEKVETVGGAP---VSVSIGVAAYPEHASDPEGLVNVSDRALYA 603

Query: 247 AKKSGRNRVVC 257
           +K +GRNRV  
Sbjct: 604 SKGAGRNRVTV 614


>gi|302339735|ref|YP_003804941.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Spirochaeta smaragdinae DSM 11293]
 gi|301636920|gb|ADK82347.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Spirochaeta smaragdinae DSM 11293]
          Length = 834

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 78/185 (42%), Gaps = 16/185 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQ 141
           +     +  R+   +  D L+GL N   F   L               +++F D+D FK 
Sbjct: 384 IASRRQAQERLHHAAYHDSLTGLPNREMFTERLQLVFSKYMHRNGATFALLFIDLDRFKM 443

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD V+   +D+L         +GR+GG+EF        E  A I A +  +
Sbjct: 444 INDSLGHLSGDMVLKETADRLENCLRDVDTIGRMGGDEFVVLMEDIGESRAVITAAE--R 501

Query: 202 IIENSQINISSG-----PSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
           IIE+ +             I  + S GI     +      ++  AD ALY AK+ G+N  
Sbjct: 502 IIESMKKPFCIRIENRVHEISTSASVGITIVNPRYINAEEMLRDADLALYRAKELGKNCY 561

Query: 256 VCFSD 260
             F++
Sbjct: 562 EIFNE 566


>gi|220933826|ref|YP_002512725.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995136|gb|ACL71738.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 1082

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S +     S   I  L+  D L+GL N + F   L           + + ++  D+D F+
Sbjct: 632 SDITAQKRSEQEIDFLANHDPLTGLANRNLFEDRLAHAISMAGRNGQHVGLLLVDLDRFR 691

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND  GH  GD ++     +L         V RLGG+EF     G +   +A + A  +
Sbjct: 692 LINDGMGHGPGDALLRETGRRLGHCVRDSDTVARLGGDEFGIILEGLADAADAGMQAERI 751

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + +         G  +  T+S GIA         +T++  AD A+ +AK+ GRN    +
Sbjct: 752 LEAMRA--PLRLGGQELFCTVSIGIAVFPADGTDAATLLRHADTAMALAKREGRNNFQFY 809

Query: 259 S 259
           +
Sbjct: 810 T 810


>gi|146308205|ref|YP_001188670.1| diguanylate cyclase [Pseudomonas mendocina ymp]
 gi|145576406|gb|ABP85938.1| diguanylate cyclase [Pseudomonas mendocina ymp]
          Length = 347

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 99/242 (40%), Gaps = 13/242 (5%)

Query: 27  FMIYFSIFFSIFIATV--IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           F IY  I F+ F+ T     +A   +    +T    +   + E+   ++  +   ++   
Sbjct: 99  FWIYPLILFNFFMVTPRKALLATALVLVSLVTHALLVPGSVFESDYQMVSFLVTCMMASV 158

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           +S           +++  L+  D L+G  N  A    L         +++   ++  D+D
Sbjct: 159 LSFIFAVRTRTQRDQLQLLAIHDPLTGARNRRAMNEELKIAMASHRRHSDSYGLLVMDLD 218

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FKQIND FGH VGD+V+    + +         + R GGEEF      +        A 
Sbjct: 219 HFKQINDRFGHHVGDQVLVAFVELIKRCSRKEDRLFRFGGEEFLLLLPNTELPGLQAAAQ 278

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +L   +          P   +T+S G A     E   + + RAD++LY AK  GRNR V 
Sbjct: 279 NLLGRVAQE----LKSPGGAVTVSIGGAVLHSGEHWESWLQRADESLYRAKSEGRNRAVI 334

Query: 258 FS 259
             
Sbjct: 335 AD 336


>gi|320159682|ref|YP_004172906.1| putative signaling protein [Anaerolinea thermophila UNI-1]
 gi|319993535|dbj|BAJ62306.1| putative signaling protein [Anaerolinea thermophila UNI-1]
          Length = 520

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 10/186 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNE---KLSIVFFDIDYFK 140
             + E       ++Q + +D L+G+ N    I      L    +     ++V  D+D FK
Sbjct: 334 RDITETRRLIRTLNQQATVDALTGVYNRRYLIELGETELEKARQMSLPFTVVLMDLDRFK 393

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           QIND FGH VGD  +  ++        +   VGR GG+EFA    G++E++A  +   L+
Sbjct: 394 QINDRFGHAVGDHALQEVARCFKAGVRSSDIVGRYGGDEFALILFGATEEQARQVLERLQ 453

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E   +    G  +HI+ S G      +   P+  ++ RAD ALY AK+ G   +  F
Sbjct: 454 NCMERLGLQ-EQGEPLHISASFGGVTCNGRCYAPLDELLRRADHALYRAKEQGGKAIEWF 512

Query: 259 SDIENN 264
           +  E  
Sbjct: 513 AGEEEE 518


>gi|312961254|ref|ZP_07775759.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens
           WH6]
 gi|311284912|gb|EFQ63488.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens
           WH6]
          Length = 862

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 85/187 (45%), Gaps = 11/187 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           + + + E   +  RI  LS  D L+GL N +   + L S           L ++  D+D 
Sbjct: 413 TATDVTEEVEARRRIEFLSLHDALTGLPNRTRLQAFLDSKLKALPPPERPLVMLSLDLDR 472

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAN 197
           FK +ND  GH  GD+V+  +S +L         V R+GG+EF      + ++ +   L  
Sbjct: 473 FKPVNDLLGHAAGDRVLNEVSSRLSACVRHGDLVARVGGDEFVLILTDAGTQDDVENLCR 532

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
            L   IE + I I     + I+ S GI    +    ++ ++  AD ALY AK +GRN   
Sbjct: 533 RLIGSIEQA-IRIDE-QDVFISASIGITLAPNDASEVTELLRYADIALYEAKAAGRNTWR 590

Query: 257 CFSDIEN 263
            +S   N
Sbjct: 591 FYSGEMN 597


>gi|227114228|ref|ZP_03827884.1| hypothetical protein PcarbP_14743 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 552

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 67/253 (26%), Positives = 107/253 (42%), Gaps = 18/253 (7%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL 80
           +  P   ++   +  ++ +A +       L  +   P + L     +  +  +     ++
Sbjct: 300 TLKPLDSLMLNVLRHTLPLALLTIFCVWLLARLIAQPLWLLARSANKMDATDVSDDIRNI 359

Query: 81  LLGYISGSILKE--------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKL 129
              Y   S LK+        L     ++   +  D ++ LLN     S L  +    +  
Sbjct: 360 HSWYFEASQLKQAMLLGIDLLQRKIGKLRSEAHSDPMTELLNRRGLDSVLRYWQMGQKSF 419

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID FK IND +GH VGD VI +LS  +         + R GGEEF      +  
Sbjct: 420 AVIALDIDRFKLINDTYGHDVGDNVIRYLSQLIRTSSRDSDILCRSGGEEFLILLPETRL 479

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH---KEPISTIIYRADQALYV 246
             A  +A  LR+ +E S I +      +ITIS G+A         PI      AD+ALY 
Sbjct: 480 DVALSIAERLRQRMEESTIPVVG----NITISLGVALWEPGVSDMPIDRTFKLADEALYQ 535

Query: 247 AKKSGRNRVVCFS 259
           AK+ GRNRV+  S
Sbjct: 536 AKQEGRNRVISAS 548


>gi|220935020|ref|YP_002513919.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996330|gb|ACL72932.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Thioalkalivibrio sp. HL-EbGR7]
          Length = 1301

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 10/182 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
            + +  +     ++  ++  D L+ L N       L             L++ + D+D F
Sbjct: 737 STDITAIKEHERQLEHIAHFDALTNLPNRVLLADRLHQAMAQAVRRGHHLAVAYLDLDGF 796

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND +GH VGDK++  ++ Q+  V      + RLGG+EF A  L  ++ EA +     
Sbjct: 797 KAINDRYGHAVGDKLLMAVAQQMHEVLREEDTLSRLGGDEFVAVLLDLADVEACVPLLTR 856

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVC 257
                   ++I  G  + I+ S G+      E I    ++ +ADQA+Y AK +G+ R   
Sbjct: 857 LLAAAARPVSI-EGRELRISASLGVTFYPQAEQIEAEQLLRQADQAMYQAKLAGKGRYHV 915

Query: 258 FS 259
           F 
Sbjct: 916 FD 917


>gi|167577730|ref|ZP_02370604.1| GGDEF domain protein [Burkholderia thailandensis TXDOH]
          Length = 504

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 13/213 (6%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L  ++ L   L   +S   +S+  S ++  ++ + L++   + +R+ +LSR D L+GL N
Sbjct: 287 LASWHSL--ALGVGISAACVSVAFSGVVWLLAFA-LRDRTAARDRLLELSRTDPLTGLGN 343

Query: 115 HSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVF 166
             A   +L S   +L       SI+F D D+FK+ ND  GH  GD  +  L+  +     
Sbjct: 344 RRALDDALQSEWARLQRNDSCLSILFIDADHFKRYNDAHGHAQGDLALKRLAACIARHAG 403

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
            +     R GGEEF A    + E  AA +A  +R  I ++    ++ P    T+S G A 
Sbjct: 404 RSGDLAARYGGEEFVAILPDADETAAARIAESIRAGIRDATRAGATPPIPRFTVSVGCAT 463

Query: 227 RCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
                   +   +  AD ALY AK  GR+R V 
Sbjct: 464 ARRGAHASLDAFVRAADDALYRAKADGRDRTVA 496


>gi|162146655|ref|YP_001601114.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161785230|emb|CAP54776.1| putative signalling protein, GGDEF family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 730

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 91/220 (41%), Gaps = 13/220 (5%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLL 113
           +   YG+E IL+   S +      S +   ++ S+ + +   +   +  L+  D L+GL 
Sbjct: 254 IADRYGMERILLT--SKIPFYDDASGMRYVLTTSLDITDRKKAERELHHLAYYDQLTGLP 311

Query: 114 NHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           + S   + +        +     + V  D+D FK IND  GH +GD ++  ++ +L    
Sbjct: 312 SRSKLETEMQVLLRQRGADGPPFAFVLMDLDRFKGINDTQGHTIGDLLLRKVALRLRTAL 371

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                + RLGG+EFA         +AA +A  +  I    +          +  SAG+  
Sbjct: 372 PRAGIIARLGGDEFAIVHDVIDAADAAHMAERIVGIFA--RPFTLGDRVTSVGASAGVTL 429

Query: 227 RCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                    T++ RAD A+Y AK  GR R   F +     
Sbjct: 430 FPARGATFETLLKRADLAMYRAKNEGRCRYAFFDEEMEQA 469


>gi|88797308|ref|ZP_01112898.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Reinekea sp. MED297]
 gi|88780177|gb|EAR11362.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Reinekea sp. MED297]
          Length = 650

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 62/187 (33%), Positives = 88/187 (47%), Gaps = 19/187 (10%)

Query: 83  GYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFF 134
           G++ G       I+Y + + +LS+ D L+GL N       LG        Y +  SI+  
Sbjct: 468 GHVIGYTATANDITYQKEVERLSQTDPLTGLANRMKLDLELGREWARFYRYQQHFSIIIV 527

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D+FK IND +GH  GD V+   +D L  +  T   +GR GGEEF      +    A +
Sbjct: 528 DLDHFKTINDQYGHQEGDLVLKKAADVLSSLLRTTDIIGRWGGEEFLILLPQTDADTAYL 587

Query: 195 LANDLRK---IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
           +A  LR    +IE  +    +G       S G A           +I  AD+ALY AK S
Sbjct: 588 VAEKLRAGLPLIEGLRSPAPTG-------SFGTASTSVFTSSAEDLIRAADRALYQAKAS 640

Query: 251 GRNRVVC 257
           GRNRV+ 
Sbjct: 641 GRNRVMV 647


>gi|330977937|gb|EGH77840.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 597

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 87/181 (48%), Gaps = 10/181 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
           +L +L  +   + Q++  D L+ L+N   F        ++       L+++F DID+FK+
Sbjct: 275 LLSQLDQARVSLQQVAHYDPLTNLINRRGFNQIFAEKLQEHTFNKGMLAVMFLDIDHFKR 334

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD+++  +++++         V R GG+EF         +EA  LA+ +  
Sbjct: 335 INDSLGHDAGDELLKVIAERIRSATRAQDVVARFGGDEFCILLSIPDYEEARHLAHRVMH 394

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            ++ +     +G  + +T S GIA           ++  AD ALY +K  GRN V  F+ 
Sbjct: 395 KMKETI--ALAGRRMVMTTSIGIAVFPRDGSTCDELLKHADLALYQSKDKGRNGVNFFNP 452

Query: 261 I 261
            
Sbjct: 453 A 453


>gi|95930120|ref|ZP_01312859.1| diguanylate cyclase/phosphodiesterase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95133814|gb|EAT15474.1| diguanylate cyclase/phosphodiesterase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 814

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 61/259 (23%), Positives = 107/259 (41%), Gaps = 18/259 (6%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFLFY-----IGLTPFYGLEYILVENLSLVIISI 76
            S    +I FS+  + F      +  +          G    + L     +   +  +S 
Sbjct: 290 LSVMAVVILFSVLLARFFGQYTLVKPLAALAQASHNFGQDQPWQLPSQYCQPAEIEQLSA 349

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKL 129
           T + +   +  S   +L  S  R+  L+  D L+GL N +  +  L          +  +
Sbjct: 350 TFTTMTQRLENSRAIQL-QSEQRLEHLATHDELTGLANRTLLLDRLDHAIEEGMRQHHAV 408

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  D+D F+ IND+ GH  GD+++  +  +L     +   V RLGG+EFA      + 
Sbjct: 409 AVLLIDLDRFQVINDSLGHDQGDRLLCQIGKRLCQHVRSTDTVSRLGGDEFALVLGDLNN 468

Query: 190 QEAAI-LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVA 247
           +E+ I L  DL K I  S         I +T S GI+   +    S T++  AD A+Y +
Sbjct: 469 EESLIPLMQDLLKEI--SSPCHIDNHHIVVTASIGISLFPNDGNDSITLLRNADLAMYQS 526

Query: 248 KKSGRNRVVCFSDIENNTC 266
           K+  +     +S   N   
Sbjct: 527 KRH-KGDFTFYSSDMNQHA 544


>gi|307823551|ref|ZP_07653780.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307735536|gb|EFO06384.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 1218

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 20/216 (9%)

Query: 64  ILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +  E +++  ++     ++ Y+ +   + +   +   I  L   D L+ L N    +  L
Sbjct: 743 VYPERITITAVTNAEGNVVNYVGTFDDISQHKKAEETIHDLVFYDSLTKLPNRRLLLERL 802

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV--- 172
                      ++L+++  D+D FK IND+ G+  GD+++  ++ ++         V   
Sbjct: 803 KHSIEVERRDGKQLALMMLDLDRFKVINDSLGYLAGDELLQQVATRIATRLRKVDIVARL 862

Query: 173 ------GRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                   LGG+EF       +  ++AA +A  +  I+      +S G  IHIT S GI+
Sbjct: 863 RKVDLLAHLGGDEFIMLLEDITHTEDAARVAEQVIAILSK-PFYLSQGDEIHITASVGIS 921

Query: 226 ERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
               H +   T+I  AD AL  AK  GR     +S+
Sbjct: 922 LYPQHGDNPDTLISYADAALNKAKAEGRGCFAYYSE 957


>gi|302523746|ref|ZP_07276088.1| conserved hypothetical protein [Streptomyces sp. AA4]
 gi|302432641|gb|EFL04457.1| conserved hypothetical protein [Streptomyces sp. AA4]
          Length = 901

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 7/179 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--EKLSIVFFDIDYFKQIN 143
           S + + E      R++  +  D L+ L N +  +  L   +  E  +++F D+D FK IN
Sbjct: 467 SFTDITERRAISARLAHEATHDPLTRLANRTLVLDRLDRRDGAESAAVLFLDLDKFKLIN 526

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKI 202
           D+ GHPVGD+V+    ++L    G    VGRLGG+EF      ++   +  + A  LR +
Sbjct: 527 DSLGHPVGDQVLRIAGERLRRATGPDDVVGRLGGDEFVVVTSATTGPAQVGVFAAHLRSV 586

Query: 203 IENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  S+     G  +H+  S GI   E   +     ++  AD A+Y AK  GR R   F 
Sbjct: 587 L--SEPVSVHGRQLHLDASMGIVLVEPDDRRTAEDLLRDADVAMYQAKSRGRGRFEFFD 643


>gi|167590180|ref|ZP_02382568.1| RNase II stability modulator [Burkholderia ubonensis Bu]
          Length = 667

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 91/192 (47%), Gaps = 19/192 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--------KLSIVFFDID 137
           SG  + E   +  R+ +L+  D L+GL N  A    + +           ++ I+F D+D
Sbjct: 218 SGIDITEERKAQQRLIELANTDVLTGLPNRHAISEQIKTVLAGDPGDNLLQVGILFLDLD 277

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAA 193
            FK++ND++GH  GD+++  +S  +         + RLGG+EF       +    E  A 
Sbjct: 278 NFKRVNDHYGHITGDRLLKDVSSIIAGCLPENATLARLGGDEFLVLFSRGTRPLLEATAQ 337

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
           ++   LR  I    +       ++ + S GIA    H + + T+I  AD A+YVAK++G+
Sbjct: 338 VILERLRTPIHLGLM------EVYTSCSIGIAMYPQHGDTLETLIRSADTAMYVAKEAGK 391

Query: 253 NRVVCFSDIENN 264
           +    FS   N 
Sbjct: 392 HTYRVFSVEMNQ 403


>gi|153835016|ref|ZP_01987683.1| sensory box/ggdef family protein [Vibrio harveyi HY01]
 gi|148868537|gb|EDL67634.1| sensory box/ggdef family protein [Vibrio harveyi HY01]
          Length = 539

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 97/200 (48%), Gaps = 10/200 (5%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-- 124
           E   L+ + + +S++L Y         F    RI  L+  D L+GL+N +AF S      
Sbjct: 339 ERKWLMQVGVVLSIVLAYFIARFQLRAFSDNQRIYYLAHHDSLTGLVNRAAFQSQASEVL 398

Query: 125 -----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                   ++ +++ D+D FK IND +GH  GDK +  ++  +  VFG+   + RLGG+E
Sbjct: 399 AQCLKAGREVCLIYLDLDSFKFINDEYGHAAGDKTLQHVASVMQRVFGSKALLARLGGDE 458

Query: 180 FAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTII 237
           FA         Q+    A+ L ++I++  I +       +T S G          +  ++
Sbjct: 459 FAILLSSQEHMQDPEHFASSLIQLIQD-PIEVRPDVYHQVTTSIGGCYAKETNCTLDELM 517

Query: 238 YRADQALYVAKKSGRNRVVC 257
           ++AD A+Y AKKSG+NR   
Sbjct: 518 HQADMAMYEAKKSGKNRYFF 537


>gi|21115005|gb|AAM42987.1| response regulator [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66575430|gb|AAY50840.1| response regulator [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 349

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 14/201 (6%)

Query: 71  LVIISITISLLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAF-------IS 120
           ++ I +  + L+     + LK   EL ++Y  +  ++  D L+GL N           I 
Sbjct: 147 ILPIPVLFATLISRQIKTTLKVEDELRLAYAAVEAIAMQDSLTGLANRRQLDVVLPAEIK 206

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEE 179
                ++ L ++  DIDYFK+ ND +GHP GD  I  +++ L            R GGEE
Sbjct: 207 RAKRTSQPLGVIMVDIDYFKRYNDYYGHPAGDLCIKAIANVLKNHTRRAGNLAARYGGEE 266

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH---KEPISTI 236
                    +      A  + + I   QI     P  ++T+S G         +   S +
Sbjct: 267 LTVLLPSCDQAAVLAAAERIVESIRGLQIAHDDSPEGYLTVSVGAYSYSAFNKEVDASGL 326

Query: 237 IYRADQALYVAKKSGRNRVVC 257
           +  AD ALY AK++GRNR   
Sbjct: 327 LKCADDALYAAKQAGRNRARL 347


>gi|312960693|ref|ZP_07775199.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           fluorescens WH6]
 gi|311285219|gb|EFQ63794.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           fluorescens WH6]
          Length = 352

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 70/262 (26%), Positives = 108/262 (41%), Gaps = 20/262 (7%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSI-------FFSIFIATVIFIANIFLFYIGLTPFYGL 61
             +   H   L S +  + M   ++        F+  +A  + I    L +    P +  
Sbjct: 85  FWVGAMHFNPLPSVTTLSMMTMNNVAIGGPRFMFAGLMAQTLGIGTALLIF---APAFMA 141

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
                +  + + I +   L LG+I       L      +  LSR D LSGLLNH A+   
Sbjct: 142 VTTQAQLYACLPILLLYPLALGWICYRQAVNLARHKRELMTLSRTDSLSGLLNHGAWKDH 201

Query: 122 LG------SYNEKLSIV-FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L         +++ +++   DID+FK IND +GH  GD V+  L   L          GR
Sbjct: 202 LEIEFQRCRRDQQGAVIALIDIDHFKLINDTYGHVTGDIVLRQLGKVLRQNLRATDLAGR 261

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPI 233
            GG+EF     G     A  +   LR       +  +  P++  ++S G+A         
Sbjct: 262 YGGDEFCVILPGMPLNHATDVMEALRDRFNA--LAYAQDPALRASLSIGLAPYQPGHADS 319

Query: 234 STIIYRADQALYVAKKSGRNRV 255
           ++ +  AD ALY AK SGRNRV
Sbjct: 320 TSWLNDADLALYEAKSSGRNRV 341


>gi|54292994|ref|YP_125409.1| hypothetical protein lpl0030 [Legionella pneumophila str. Lens]
 gi|53752826|emb|CAH14260.1| hypothetical protein lpl0030 [Legionella pneumophila str. Lens]
          Length = 976

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 11/183 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
            + +       +   +  D L+ L N    ++ L          N+KL+++F D+D FKQ
Sbjct: 536 DVTQKKSYEEMLKHQATFDNLTNLPNRLYAVNKLERVISKSHINNQKLAVLFLDLDEFKQ 595

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           IND+ GH +GD ++  LS++ + +      + RLGG+EF         +++A I+A   R
Sbjct: 596 INDSLGHAIGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILENIMQDKDAEIIAKKCR 655

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +I   SQ  +     + ++ S GIA    H +   T++  AD A+Y +K  G+N    F 
Sbjct: 656 EIC--SQPFVIESQELLVSTSIGIAIYPEHGKDAKTLMRNADTAMYQSKIRGKNNWTVFQ 713

Query: 260 DIE 262
           +  
Sbjct: 714 NTM 716


>gi|50122772|ref|YP_051939.1| hypothetical protein ECA3851 [Pectobacterium atrosepticum SCRI1043]
 gi|49613298|emb|CAG76749.1| putative exported protein [Pectobacterium atrosepticum SCRI1043]
          Length = 534

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 65/250 (26%), Positives = 105/250 (42%), Gaps = 18/250 (7%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL 80
           +  P   ++   +  ++ +A +       L  +   P + L     +  +  +     ++
Sbjct: 282 TLKPLDGLMLNVLRHTLPLALLTIFCVWLLARLIAQPLWLLARSANKMDATDVSDDIRNI 341

Query: 81  LLGYISGSILKE--------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKL 129
              Y   S LK+        L     ++   +  D ++ LLN     S+L  +    +  
Sbjct: 342 HSWYFEASQLKQAMLLGIDLLQRKIGKLRSEAHSDPMTELLNRRGLDSALRYWQMGQKSF 401

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID FK+IND +GH VGD VI  LS  +         + R GGEEF      ++ 
Sbjct: 402 AVIALDIDRFKRINDTYGHDVGDNVIRDLSQLIRSNSRDSDILCRSGGEEFLILLPETTL 461

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH---KEPISTIIYRADQALYV 246
             A  +A  LR+  + S I +       ITIS G+A          I      AD+ALY 
Sbjct: 462 DVALDIAERLRQRTQESTIPVVG----SITISLGVALWQPAVNDISIERTFKLADEALYK 517

Query: 247 AKKSGRNRVV 256
           AK+ GRNRVV
Sbjct: 518 AKQEGRNRVV 527


>gi|32472612|ref|NP_865606.1| response regulator [Rhodopirellula baltica SH 1]
 gi|32443849|emb|CAD73290.1| conserved hypothetical protein-putative response regulator
           [Rhodopirellula baltica SH 1]
          Length = 614

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 10/183 (5%)

Query: 90  LKEL-FISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQIN 143
           L+EL  +    + +++  D L+GL N   F   L      + ++  +++  D+D FK IN
Sbjct: 173 LEELVRVRTAELERVALHDGLTGLANRIKFNDRLRDSLANANSQPPAVLLIDLDQFKLIN 232

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKI 202
           D  GHP GD++I  +  +L  V G    V RLGG+EFA       +++    +A+ ++  
Sbjct: 233 DTLGHPAGDELIRIVGQRLSAVVGAAGLVARLGGDEFAVVLDHNPTQRTIESIADGIQSS 292

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +   +  +  G    +T S GI     +      +I  AD A+Y AK  GR+    F   
Sbjct: 293 VA--EPVLLDGVPFSVTASIGICGSPDENCDADELIRNADIAMYRAKADGRDCARYFEKG 350

Query: 262 ENN 264
            + 
Sbjct: 351 MDQ 353


>gi|148265917|ref|YP_001232623.1| diguanylate cyclase [Geobacter uraniireducens Rf4]
 gi|146399417|gb|ABQ28050.1| diguanylate cyclase [Geobacter uraniireducens Rf4]
          Length = 380

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 90/201 (44%), Gaps = 22/201 (10%)

Query: 74  ISITISLLLGYISGSILKELF--ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI 131
           IS    L L  ++ +  + L   + Y+++ +L+  D L+GL N   F   LG   E+  +
Sbjct: 154 ISSLSVLFLTGVAENFARTLKNSLEYSKVKELAMRDSLTGLFNRRVFDEMLGLEGERQKL 213

Query: 132 VFFDIDY-----------FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           +                 FKQ+ND FGH  GD+V+A     L         V R GGEEF
Sbjct: 214 M------PLSLLLIDLDDFKQVNDTFGHSAGDQVLATFGRILRESCRGADLVARYGGEEF 267

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIY 238
           A     +   +A  +A  LR     +      G    +T S GIA        P+S ++ 
Sbjct: 268 AVVLPTTPSSKAFEIAQRLRIRFAATAFAF-EGRHFKLTASIGIACTFDTSSVPVSDLVQ 326

Query: 239 RADQALYVAKKSGRNRVVCFS 259
           RAD ALY AKK G+NR+  +S
Sbjct: 327 RADNALYRAKKEGKNRISVYS 347


>gi|323704633|ref|ZP_08116211.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323536095|gb|EGB25868.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 670

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 88/197 (44%), Gaps = 14/197 (7%)

Query: 69  LSLVIISITISL-LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---- 123
           LSL ++ I  S   +G I    + E       +   S  D L+G+ N   F+  L     
Sbjct: 479 LSLSVVKINGSWHAIGII--RDISERKKFEELLYLRSVTDPLTGIYNRRFFMDILEKEVE 536

Query: 124 ---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 +  S++ FD+D+FK +ND FGH  GD V+  + + +           R GGEEF
Sbjct: 537 MTKRNKKPFSLIMFDLDHFKNVNDYFGHAAGDMVLKRVVEIVKERIRKTDCFARWGGEEF 596

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                 +S   A+ +A +LR  I  ++ +       ++T S G  +    + I T++ R 
Sbjct: 597 IIFLPETSLNNASDIAEELRFKISTAKFDGVG----NVTASFGATDFKENDNIDTVLLRL 652

Query: 241 DQALYVAKKSGRNRVVC 257
           D  LY AK +GRN V  
Sbjct: 653 DNMLYEAKNNGRNCVCV 669


>gi|315181222|gb|ADT88136.1| sensory box/ggdef family protein [Vibrio furnissii NCTC 11218]
          Length = 606

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 64/187 (34%), Positives = 91/187 (48%), Gaps = 20/187 (10%)

Query: 84  YISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---------SYNEKLSIVF 133
           YI+  I + E     N++ +LS  D L+ L N   F   L          ++N    +V 
Sbjct: 424 YITSIIDISERKALENQLRELSEKDSLTHLWNRRKFEQELQTQTQLVERYAHNHDACLVL 483

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK+IND  GH  GD+VI  ++  L     +  F+ R+GGEEFA     ++  EA 
Sbjct: 484 IDIDFFKRINDEQGHDQGDRVIIQVAQILTHQLRSTDFIARIGGEEFAVIMPHTAIDEAH 543

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            + + LR  +   Q       S+ +TISAG+ +       S     AD ALY +K  GRN
Sbjct: 544 RVVDRLRAAVAIDQ-------SLTVTISAGVTDLTFDSNRS--YKCADIALYESKTLGRN 594

Query: 254 RV-VCFS 259
           RV VC S
Sbjct: 595 RVSVCHS 601


>gi|300311871|ref|YP_003775963.1| EAL domain-containing protein [Herbaspirillum seropedicae SmR1]
 gi|300074656|gb|ADJ64055.1| EAL domain containing protein [Herbaspirillum seropedicae SmR1]
          Length = 1036

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 92/215 (42%), Gaps = 17/215 (7%)

Query: 64  ILVENLSLVIISITISLLLGYISGS-ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +  E L++  +      +  Y+S    + +  ++  RI +L+  D L+ L N +  +  L
Sbjct: 558 VYPEWLTISAVKNKDQQVTHYVSTHHDISDRKLAEERIRELAFFDALTRLPNRTLLLDRL 617

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                         +++F D+D+FK +ND  GH  GD ++  ++ +L+        V R+
Sbjct: 618 KQAIALSLRTKTCAALLFIDLDHFKTLNDTIGHEKGDTLLKQVAQRLLANVRENDTVARV 677

Query: 176 GGEEFAAAALGSSE--QEAA----ILANDLRKIIENSQINISSGPSIHITISAGIAER-C 228
           GG+EF     G +E  QEAA     +   +   + ++            T S G      
Sbjct: 678 GGDEFVVVLEGLNELQQEAATQTRAIGEKILTALGST--YQLDDVEYRTTASIGATVFLG 735

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
               +  ++ +AD A+Y AK++GRN +  F     
Sbjct: 736 RAASVDELMKQADLAMYKAKETGRNALRFFDPAMQ 770


>gi|322419628|ref|YP_004198851.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Geobacter sp.
           M18]
 gi|320126015|gb|ADW13575.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. M18]
          Length = 705

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 11/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
            + E       I   ++ D L+ L N   F+              + L+++F D+D+FKQ
Sbjct: 258 DISERKRLEQIIKHQAQHDPLTDLPNRKLFMDFLALELAQARRNKKSLAVLFLDLDHFKQ 317

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLR 200
           IND  GH  GD ++  ++ +L         V R+GG+EF       ++  +   + + + 
Sbjct: 318 INDTLGHAAGDLLLQAVAQRLKRCVRESDTVARIGGDEFNVLMPDLAQTDDVGTVVSKIM 377

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +          G  +  + S G++      E    ++ +AD A+YVAK+S  N    ++
Sbjct: 378 GVF--GPPFRLEGIEVQASTSLGVSMFPDDGESCEELLQKADGAMYVAKQSDGNSYQFYN 435

Query: 260 DIEN 263
           D  N
Sbjct: 436 DEIN 439


>gi|81301343|ref|YP_401551.1| diguanylate cyclase with GAF sensor [Synechococcus elongatus PCC
           7942]
 gi|81170224|gb|ABB58564.1| diguanylate cyclase with GAF sensor [Synechococcus elongatus PCC
           7942]
          Length = 421

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 55/198 (27%), Positives = 94/198 (47%), Gaps = 11/198 (5%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------- 123
           +++  +   L +      +LK L ++  R+    RID L+ + N   F            
Sbjct: 219 VLLTQVAEQLSIAIAQSQLLKTLQVTNQRLQDQVRIDGLTQIPNRRRFDEYFNDVWLWGC 278

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAA 182
             +  ++++  D+DYFK  ND +GH  GD+V+  +   L  V       V R GGEEF A
Sbjct: 279 RDHTPVALLLIDVDYFKTYNDFYGHLAGDEVLRKIGLLLNSVVLRATDLVARYGGEEFVA 338

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPIS--TIIYR 239
               ++ + A  +A  L+  ++  QI  +  P    +T+S GIA       ++   +I +
Sbjct: 339 VLPSTTLEGAQAVARRLQADLQRLQIPHNHSPVAAWVTVSIGIAVTIPTIDVALTDLIDQ 398

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD+ALY AK +GRN ++ 
Sbjct: 399 ADKALYEAKSAGRNCIMW 416


>gi|77362381|ref|YP_341955.1| hypothetical protein PSHAb0472 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76877292|emb|CAI89509.1| conserved protein of unknown function ; putative GGDEF domain
           protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 699

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 11/189 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
            +    + E   +   I + +  D L+ L N    +  L             ++++F D+
Sbjct: 248 MVIIRDITEQHDAEELIRKQAYYDNLTSLPNRFLALDRLSHMLFEAQRNKGHVAVLFIDL 307

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAIL 195
           D FK++ND+FG+ +GDK++   + +L  V      +GRLGG+EF     G +    A  +
Sbjct: 308 DNFKKVNDSFGYELGDKLLIKSAARLQQVIRKEDTIGRLGGDEFIVLLRGINCHYNAIDI 367

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
              L K    +      G  + +T+S G+A      +  S ++  AD A+Y AK  GRN 
Sbjct: 368 TEKLLKNF--TSPFKIEGRELVLTMSIGVAMYPENGDTASDLLRNADTAMYQAKALGRNT 425

Query: 255 VVCFSDIEN 263
              F+   N
Sbjct: 426 YSFFTPQMN 434


>gi|89069961|ref|ZP_01157293.1| diguanylate cyclase, putative [Oceanicola granulosus HTCC2516]
 gi|89044409|gb|EAR50540.1| diguanylate cyclase, putative [Oceanicola granulosus HTCC2516]
          Length = 503

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 50/171 (29%), Positives = 77/171 (45%), Gaps = 8/171 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147
              + + + S  D L+GL N    +  +               +V FD D FK +ND +G
Sbjct: 322 RLRDELHEQSIRDPLTGLHNRRHLLDRMRRELSEADRRGAPFGLVTFDADRFKAVNDTYG 381

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  L+  +  V        R+G EEFA    G+    AA     LR  +E  +
Sbjct: 382 HDAGDAVLLALAAVMGEVLEEGWTGCRIGVEEFALLVPGADVAAAAAAGERLRARVEAME 441

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  +      +T+S G+A    H    + ++ R+D+ALY AK+ GRNRV  
Sbjct: 442 VRHAGAVLPPVTVSVGVAVYPDHGRDAAALLKRSDEALYAAKEGGRNRVAI 492


>gi|329916046|ref|ZP_08276349.1| hypothetical protein IMCC9480_1947 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327544778|gb|EGF30179.1| hypothetical protein IMCC9480_1947 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 233

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 53/199 (26%), Positives = 87/199 (43%), Gaps = 21/199 (10%)

Query: 82  LGYISGSILK----------ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------ 125
           +GY++ S L+          +L      +  L+  D L+GL N + F   L +       
Sbjct: 32  IGYLARSFLQMSKRLSSQVGDLQAREQHLQHLAHHDPLTGLPNRAMFQQVLETMVDKARA 91

Query: 126 -NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
              +  ++F D+D FKQ+ND  GH VGD+ +   + ++         V RLGG+EF    
Sbjct: 92  DGSRFCLMFIDLDKFKQVNDQLGHVVGDQALQLAAMRMRASVRGDDLVARLGGDEFTILV 151

Query: 185 LG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQ 242
                E +   +A  L  + +  Q     G    +T S GI+      +    ++  AD 
Sbjct: 152 RSFRHESDVTAMAQKLIHVFD--QPFAVDGHEFEMTCSIGISMFPQDGKDGDQLLNAADA 209

Query: 243 ALYVAKKSGRNRVVCFSDI 261
           A+Y AK   R+R+  FSD+
Sbjct: 210 AMYRAKLGTRSRLEWFSDL 228


>gi|310778241|ref|YP_003966574.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
 gi|309747564|gb|ADO82226.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
          Length = 568

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 84/174 (48%), Gaps = 9/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L     ++   S ID L+   +   F       ++ L  ++  L  + FDID+FK INDN
Sbjct: 393 LEEKNEQLFLHSTIDPLTKTYSRRYFSELFSKELTKLKRHHLSLCCMIFDIDHFKSINDN 452

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD ++  +S  +          GR GG+EF  A   +  +   I+A  + K I  
Sbjct: 453 YGHLAGDYILEAISKIIHDKIRNEDIFGRYGGDEFLIALPETELKAGKIVAEKIIKTIAE 512

Query: 206 SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
               I +  SI +T+S GI+      + I   I  +D ALY+AKK+GRNRV  +
Sbjct: 513 ETF-IFNDTSIKVTLSIGISALDDSFDTIEAAIKNSDSALYLAKKNGRNRVEVY 565


>gi|270263695|ref|ZP_06191964.1| diguanylate cyclase [Serratia odorifera 4Rx13]
 gi|270042579|gb|EFA15674.1| diguanylate cyclase [Serratia odorifera 4Rx13]
          Length = 354

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 74/255 (29%), Positives = 118/255 (46%), Gaps = 31/255 (12%)

Query: 28  MIYFSIFFSIFIATVIFIANIF-----LFYIGLT---------------PFYGLEYILVE 67
           M+ F+   S+ I +++ + NI      LF+ GL                PF      L  
Sbjct: 95  MMAFNALPSVVILSMMGMNNIAAAGKTLFFKGLVAQLAGALTVSALLGFPFQPQSTPLQI 154

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
            L L +I +    LLG ++    K L      + ++S  D L+GL N   +   L     
Sbjct: 155 YLCLPMIYL-YPALLGLVTYRTAKRLAQKKQELLRISMRDGLTGLYNRRHWEHLLHHQFD 213

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               Y    +++  D+D FK IND FGH +GD+ +A L+++L++       VGR GG+EF
Sbjct: 214 SCRRYQHTATLILMDVDRFKTINDTFGHALGDEALAVLAEELLIGLRAVDIVGRYGGDEF 273

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYR 239
            A    +S ++A+I    +++ + +  I     P + + ISAGIA+           +  
Sbjct: 274 GAVLPNTSAEQASIALQRIQERLND--IIFREAPQLRLNISAGIADYHGDMGGYLDWLKA 331

Query: 240 ADQALYVAKKSGRNR 254
           AD ALY AK +GRNR
Sbjct: 332 ADNALYRAKNNGRNR 346


>gi|104780511|ref|YP_607009.1| hypothetical protein PSEEN1308 [Pseudomonas entomophila L48]
 gi|95109498|emb|CAK14199.1| conserved hypothetical protein; GGDEF domain protein [Pseudomonas
           entomophila L48]
          Length = 358

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 101/223 (45%), Gaps = 15/223 (6%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102
           + +A+  L   GL P    +   ++ L+ + +     L LG +   +  +L     R+S 
Sbjct: 129 MLLASALLG-TGLQP----QATQLQVLACLPMLTLYPLALGGVCYQLAIKLAEHKRRLSA 183

Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LSR D L+GLLNH ++   L               I   DID+FK IND +GH VGD V+
Sbjct: 184 LSRTDSLTGLLNHGSWKDLLLLKFQICQQQQLPAVIALIDIDHFKTINDTYGHVVGDCVL 243

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             LS +L          GR GG+EF     G+ E  A      LR+ + + +      P 
Sbjct: 244 RQLSQELKRSLREDDLAGRYGGDEFCVILPGTQEAHACQAMERLRERVGDYR--NPQLPD 301

Query: 216 IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           + I++S G+A            +  AD+ALY AK  GR++V  
Sbjct: 302 LRISLSIGLAAFQPGLPTPEHWLAEADRALYAAKHQGRDQVNF 344


>gi|78048527|ref|YP_364702.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036957|emb|CAJ24657.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 375

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 13/173 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           ++      + + +R D L+GL N  AF            +  + LS+   D+D+FK +ND
Sbjct: 207 QMDALNADLVEQTRTDPLTGLPNRRAFAVALAAATEQTRAVGQPLSVALLDVDHFKTVND 266

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD V+  LS  L         + R GGEEF      +   +A +    LR+ + 
Sbjct: 267 VHGHDQGDAVLRELSALLRAHMAGAGTIARYGGEEFVLLLPNTDLLQARVQCEYLRQSVA 326

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              I +       +T+S G+A    +E +  +I RADQALY AK+ GR++VV 
Sbjct: 327 AMTIALP------VTVSIGVATLYPQESVEAVIKRADQALYAAKRGGRDQVVA 373


>gi|88704313|ref|ZP_01102027.1| GGDEF domain protein [Congregibacter litoralis KT71]
 gi|88701364|gb|EAQ98469.1| GGDEF domain protein [Congregibacter litoralis KT71]
          Length = 335

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 13/192 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128
           ++I   LG ++  +     I Y  +  +   D L+GL N  +        +S    +N  
Sbjct: 143 LSIEQALGTVARCL--RAAIEYQTLESMVNQDSLTGLGNRLSLHKWIERELSRTRRHNSP 200

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+++  D+D+FK+IND  GH  GD V+  +++           + R GG+EF      + 
Sbjct: 201 LALMMIDVDHFKKINDRLGHLGGDHVLRTIANVFKRSTRGSDLLFRYGGDEFTILLPHTD 260

Query: 189 EQEAAILANDLR---KIIENSQINI-SSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
              A   A  +R   K I +    +   G  +   +S GIA     +  ST++ RAD  L
Sbjct: 261 LPGAREAAKQIRANLKRISSEDFGLGEHGEGLRPDVSIGIASYHAGDTESTLLQRADTHL 320

Query: 245 YVAKKSGRNRVV 256
           Y AK +GR  + 
Sbjct: 321 YHAKANGRGAIC 332


>gi|331007775|ref|ZP_08330893.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [gamma proteobacterium IMCC1989]
 gi|330418414|gb|EGG92962.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [gamma proteobacterium IMCC1989]
          Length = 665

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 106/254 (41%), Gaps = 23/254 (9%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL-------LLG 83
            S+  ++ +   I +A + L  I   P   L   L + ++   +   I +        L 
Sbjct: 142 LSLSIAVIMLIAIILAGLLLKRIYADPLKELMENLKQYINKENVDSFIDMKHQGEFGELA 201

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136
           +       EL  +  +++ L+  D L+GL N           ++S        +I+F D+
Sbjct: 202 HWFNQRTNELLATQEQVNSLAFYDPLTGLPNRKMLKIHIDKKLASAQKNKTCGAIIFLDL 261

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA------LGSSEQ 190
           D+FK +ND+ GH +GD+++     +L +        GRLGG+EF            +  +
Sbjct: 262 DHFKVLNDSLGHDIGDQLLIEFRKRLDLCLRKGDLAGRLGGDEFVIVLSLPAFKNHNRTK 321

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
             + +A  +   +  ++  +  G   HIT S GIA    H      I+  AD A+Y +K 
Sbjct: 322 IPSAIAKQILSSL--TEPFLLKGNMYHITASIGIALFDEHSSSTEDILKYADSAMYHSKS 379

Query: 250 SGRNRVVCFSDIEN 263
           +GRN    F +   
Sbjct: 380 NGRNTYCFFENGMQ 393


>gi|212637035|ref|YP_002313560.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212558519|gb|ACJ30973.1| GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 344

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 66/257 (25%), Positives = 118/257 (45%), Gaps = 21/257 (8%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANI--FLFYIGLTPFYGLEYILVENLSLV--II 74
           +ES +    M++    F++F    + +  I  FL +      Y      V  L+    ++
Sbjct: 86  IESLADILVMVF---VFALFPNRKVMLLGILPFLLFSCFYRLYEYPESPVYPLTKFACVL 142

Query: 75  SITIS---LLLGYISGSILKELFISY--NRISQLSRIDCLSGLLNHSAFISSL------- 122
           +I IS   ++ G+   +++++        +  +L+ ID L+ + N   F   L       
Sbjct: 143 AIIISGQKIISGWFIKAVIRDFEKQKLVKQFKRLALIDGLTNISNRRHFDEILSQEVRVA 202

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFA 181
              +  LSI+  DID+FK++ND  GH  GD  +  +++ +   V      V R GGEEF 
Sbjct: 203 ERNHHALSIILLDIDFFKRLNDTLGHQAGDAQLIKIAEIISSAVNRPRDLVARYGGEEFV 262

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEPISTIIYRA 240
            A   ++ + A  +A  ++ ++E +QI    S  S  +T+S GIA+         +I  A
Sbjct: 263 IALPNTNLEGAIRVAEKVKSLLEEAQIVHPCSDVSAQVTLSQGIAQWEPGMSRDQLIKAA 322

Query: 241 DQALYVAKKSGRNRVVC 257
           D+ LY AK +GR+    
Sbjct: 323 DRMLYRAKSAGRDSYCF 339


>gi|123442529|ref|YP_001006506.1| putative phosphodiesterase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089490|emb|CAL12338.1| putative phosphodiesterase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 864

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 10/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           S+  E  +S  +I  L+  D L+GL N + F       I+     N  L+++  ++D FK
Sbjct: 421 SLAMERELSRKQIQHLAFYDSLTGLPNRTQFLVYAKQAIALAAEMNHPLAVLVINLDRFK 480

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND+ GH  GD+++A ++ +L         +GRL G+EF       + Q+  +    + 
Sbjct: 481 QVNDSLGHAAGDELLAAMAQRLRDSLPKNDIIGRLSGDEFIIMLTSCTMQQTTVRVEKML 540

Query: 201 KIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++  SQ    +  +I  + S GI+        + T++  AD A++ AK  GR     FS
Sbjct: 541 SLL--SQPCQIANMNIIPSASVGISLYPENGMEMDTLMNHADIAMHKAKNMGRGHFNFFS 598

Query: 260 DIENN 264
              NN
Sbjct: 599 AEMNN 603


>gi|332307023|ref|YP_004434874.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174352|gb|AEE23606.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 1503

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 7/184 (3%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISS---LGSYNEKLSIVFFDIDYFKQIND 144
            S +     +   + +L+  D L+ L N S F +S   +     + +++  D+D FK+IND
Sbjct: 1056 SDITPRKSTEKELLKLANTDPLTDLPNRSFFQASHNNIVRRGTQHALICLDMDNFKKIND 1115

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKII 203
            + GH  GD +I  ++ +L  + G      RLGG+EF+      +        +  +   +
Sbjct: 1116 SLGHQTGDLLIKQIARRLQKLAGKSATCYRLGGDEFSILLDKDTDVHNVTHFSQSILDDL 1175

Query: 204  ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
               +  + +     +  S GIA           ++  AD A+Y AK +G N+   FS   
Sbjct: 1176 A--RPFLINHQEFVLGASIGIAFFPEDGSSPQELLKNADTAMYFAKNAGGNKYQFFSGEM 1233

Query: 263  NNTC 266
            N   
Sbjct: 1234 NQNA 1237


>gi|315497940|ref|YP_004086744.1| diguanylate cyclase/phosphodiesterase [Asticcacaulis excentricus CB
           48]
 gi|315415952|gb|ADU12593.1| diguanylate cyclase/phosphodiesterase [Asticcacaulis excentricus CB
           48]
          Length = 739

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 103/222 (46%), Gaps = 14/222 (6%)

Query: 55  LTPFYGLEYILVENLSLVIISIT---ISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           L    GL+  +   +  +++S     ++L L + S    + L  S  R   ++  D L+G
Sbjct: 251 LPSRPGLDLFMRALIPSLLVSAGLGGVALALLHRSQKTARSLIASEARAKHMALHDGLTG 310

Query: 112 LLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           L N + F   L    E+L       +++   +D FK +ND  GH  GD++I   + ++  
Sbjct: 311 LPNRTLFTDRLNQATERLRRHGGSVAVMCVGLDRFKDVNDTLGHSAGDELIRHSAQKIGS 370

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           +      + RLGG+ F      +    AA LA  + + +   Q+ + SGP ++ + S G+
Sbjct: 371 MIRAGDTLARLGGDVFVIIQTDTDAHSAAALAKRVLEGL-KGQVTLESGP-VYSSCSIGV 428

Query: 225 AERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                 +   +  + +AD ALY AK+ GR++   F +IE + 
Sbjct: 429 TLLQESDIEAAEALRQADLALYRAKEQGRSQYAFF-EIEMDA 469


>gi|237748970|ref|ZP_04579450.1| response regulator receiver:Metal-dependent phosphohydrolase
           [Oxalobacter formigenes OXCC13]
 gi|229380332|gb|EEO30423.1| response regulator receiver:Metal-dependent phosphohydrolase
           [Oxalobacter formigenes OXCC13]
          Length = 713

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 57/219 (26%), Positives = 104/219 (47%), Gaps = 11/219 (5%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLL 113
           + P  G ++  V   +L      +   +GY+   + + E     N + + + +D L+ L 
Sbjct: 481 MVPDQGFQWFEVSVNALWNTETNVE-CVGYLGKLVNIHERKTEANLLRKQANMDSLTELD 539

Query: 114 NHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
           N       L      +  E+ +  F DID FK INDN GH  GD+++ +++ ++     +
Sbjct: 540 NRKRIRERLISLFEENKKEEGAFFFIDIDNFKAINDNLGHMFGDEILRYIASEIKRKVRS 599

Query: 169 PMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAGIAER 227
              VGR+GG+EF A    SS ++A A  A D+  +  N+   +      +++ S GI+  
Sbjct: 600 TDIVGRIGGDEFVAFLRNSSSEKAVAEKARDICDLFRNTYKELID--KYNVSCSVGISLF 657

Query: 228 C-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
               E    + + AD+ALY AK+ G+N    +++   N+
Sbjct: 658 PRDGETYEELFHNADRALYYAKERGKNGYAFYNETMGNS 696


>gi|239820804|ref|YP_002947989.1| diguanylate cyclase with PAS/PAC sensor [Variovorax paradoxus S110]
 gi|239805657|gb|ACS22723.1| diguanylate cyclase with PAS/PAC sensor [Variovorax paradoxus S110]
          Length = 1007

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 8/177 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           + +    +   R+  L++ID L+GL N + F + LG   ++       +++++ DID FK
Sbjct: 820 TDITRQKLEEKRLVGLAQIDPLTGLANRAGFEARLGEAMDRSRSAGALMALMYLDIDGFK 879

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           QIND FGH  GD+++   S +L     +     RLGG+EF     G    + A+ A    
Sbjct: 880 QINDQFGHQTGDELLKAFSGRLSQGLRSSDVRARLGGDEFTVIMEGLPHADIAVAAATKL 939

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            +   +   +    +I++T S G+A         + ++ +AD+ LY AK++GRN V 
Sbjct: 940 VLAMQTPFTVEPQRTINVTASIGLAFYQGGAATSAALVKQADEMLYRAKRAGRNNVQ 996


>gi|118589729|ref|ZP_01547134.1| hypothetical protein SIAM614_04795 [Stappia aggregata IAM 12614]
 gi|118437815|gb|EAV44451.1| hypothetical protein SIAM614_04795 [Stappia aggregata IAM 12614]
          Length = 891

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 62/211 (29%), Positives = 88/211 (41%), Gaps = 14/211 (6%)

Query: 60  GLEYILVENLSLVI-ISITISLLLGYISGSIL-KELFISYNRISQLSRIDCLSGLLNHSA 117
           G  YIL  N  +   I +   LL    S     +EL  +   +   S  D L+GL N   
Sbjct: 420 GQRYILGVNWDVSSDIQLKTRLLTAKQSAEDRNRELEDARALMEHYSLHDSLTGLPNRRF 479

Query: 118 FISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
               L    +     +++  D+D FK IND  GH  GD ++   +  L        FV R
Sbjct: 480 LDQELLDEEAPQRPTALLHIDLDRFKHINDTLGHAAGDAMLTHAASVLKENVSDSDFVAR 539

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEPI 233
           +GG+EF  A   +   + A LA    +II   +  +          +S GIA       +
Sbjct: 540 IGGDEFVIAI--TEPADEASLAARADRIIAQMRRPVPFENHQCRFGVSIGIAMA--DTTL 595

Query: 234 ST----IIYRADQALYVAKKSGRNRVVCFSD 260
           S     ++  AD ALY AK +GRNR   FSD
Sbjct: 596 SDYGRHLLVDADIALYRAKSNGRNRFEFFSD 626


>gi|116328680|ref|YP_798400.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116330663|ref|YP_800381.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116121424|gb|ABJ79467.1| Response regulator, GGDEF family [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124352|gb|ABJ75623.1| Response regulator, GGDEF family [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 352

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 101/182 (55%), Gaps = 9/182 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           S L  + +  +R+ +L+ +D ++GL  H  F + L    E+       L+++F D+D FK
Sbjct: 170 STLAGIAVENSRLYELATVDMMTGLKVHHYFQTKLKEEMERCRKKKSHLTLLFTDVDNFK 229

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           + ND  GH  GD+V+  ++ QL+   G      R GGEEF     G+  +    +   +R
Sbjct: 230 KFNDTHGHQAGDQVLIEVAKQLIRKAGKYDIPARYGGEEFCLIMPGADLERGYEMGETIR 289

Query: 201 KIIENSQI-NISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           K +E S + N + GP + +T+S G++E   K+     +I R+D+ALY+AK SG+N+ +C+
Sbjct: 290 KAVEASSVKNPNGGPDLKVTLSVGVSEFWPKDKNNRDLIERSDKALYMAKHSGKNQTICY 349

Query: 259 SD 260
            +
Sbjct: 350 KE 351


>gi|91778092|ref|YP_553300.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
 gi|91690752|gb|ABE33950.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
          Length = 790

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 104/244 (42%), Gaps = 16/244 (6%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL----EYILVENLSLVIISITIS 79
           P   +I           T     +  L+       +G     +  +V  + +  I +  S
Sbjct: 128 PAMVVIPVCAAPLWLTPTHFVAGSALLYATAYALLFGAPLTRDVEIVVWMWIAAIGVPTS 187

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVF 133
            +  +      +  F+  ++++QL+  D L+GL N  +F+              ++S +F
Sbjct: 188 AVFHFGFYRFRRNHFLLESQLAQLAATDPLTGLQNRRSFVKQAERRLDTLAPETRISAIF 247

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID FK +ND FGH VGD  +  ++  L+        V R+GGEEFA          A 
Sbjct: 248 LDIDNFKSLNDRFGHAVGDHALYEVAHALMEEASADDSVSRIGGEEFALLLCD-GLTGAL 306

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            LA  LR  I   +      P   +T S G+AE    E I  ++ RAD+AL  AK SGRN
Sbjct: 307 HLAERLRLAIAAIER-----PDGQLTASFGVAEHRSGESIMMLLDRADEALLRAKHSGRN 361

Query: 254 RVVC 257
           RV  
Sbjct: 362 RVCA 365


>gi|15595482|ref|NP_248976.1| hypothetical protein PA0285 [Pseudomonas aeruginosa PAO1]
 gi|116054012|ref|YP_788454.1| sensory box GGDEF domain-containing protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|313112106|ref|ZP_07797889.1| putative sensory box/GGDEF domain-containing/EAL domain-containing
           protein [Pseudomonas aeruginosa 39016]
 gi|9946128|gb|AAG03674.1|AE004466_8 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|115589233|gb|ABJ15248.1| putative sensory box/GGDEF domain/EAL domain protein [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|310884391|gb|EFQ42985.1| putative sensory box/GGDEF domain-containing/EAL domain-containing
           protein [Pseudomonas aeruginosa 39016]
          Length = 760

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 10/180 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFK 140
           S L  +  S N +  L+  D L+GL N       +    E         +++  D+D+FK
Sbjct: 315 SDLSSIKRSENELDFLAHHDSLTGLPNRVLLRERIEQALENGKDRTVAGALLLIDLDHFK 374

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND+ GH  GD ++  +S +L         + RLGG+EFA        +  A L+  + 
Sbjct: 375 HINDSLGHTTGDMLLKEVSKRLQHQLDERCLLSRLGGDEFAILVENDDPEAVARLSQRIL 434

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
               N+  +I   P I+I+ S G++        +  ++  AD AL+ AK SGRN    ++
Sbjct: 435 DGF-NAPFDIHCQP-IYISASLGVSLYPEDASDVDHLMQHADAALFQAKDSGRNAYAFYT 492


>gi|207721428|ref|YP_002251869.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           MolK2]
 gi|206586587|emb|CAQ17174.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           MolK2]
          Length = 534

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 99/191 (51%), Gaps = 9/191 (4%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLG 123
           LV+ S+        ++  + + L  + + ++  +  D L+G+L    F++          
Sbjct: 342 LVVWSLLRERQHHRVTRHLNQRLQRTNSALANEAHFDHLTGVLTRRRFLALFETVLTRAH 401

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
              E L +V  D+D+FK+IND +GH VGD  +   +     V  +   +GRLGGEEFA  
Sbjct: 402 VRGESLVLVLADLDHFKRINDTWGHAVGDLALQRFASLATGVMRSSDLIGRLGGEEFAVV 461

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              ++ ++AA +   LR I+  +  ++ SG  + +T+S G+      +  S ++ RAD A
Sbjct: 462 MSSTTLEDAAGVVERLRAIVAEADDSLPSG--LTMTVSLGMTACRSGDTASEMLRRADLA 519

Query: 244 LYVAKKSGRNR 254
           LY AK+SGRNR
Sbjct: 520 LYRAKESGRNR 530


>gi|94310810|ref|YP_584020.1| diguanylate cyclase [Cupriavidus metallidurans CH34]
 gi|93354662|gb|ABF08751.1| conserved hypothetical protein (contains GGDEF domain) [Cupriavidus
           metallidurans CH34]
          Length = 586

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 66/199 (33%), Positives = 96/199 (48%), Gaps = 17/199 (8%)

Query: 75  SITISLLLGYISGSILKELFISY----NRISQLSRIDCLSGLLNHSAFISSLGSYNE--- 127
           ++ + LLL + + +I+  LF  Y      +  L+  D L+GL N   F S          
Sbjct: 372 AVALGLLLCF-TLAIVHTLFGHYIARGEALRTLAETDALTGLANRRVFASRFADAYAWCK 430

Query: 128 ----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                +S++  DID FK+IND +GH  GD V+  L+D L           RLGGEEFA  
Sbjct: 431 RDAVPVSLIMLDIDRFKKINDRWGHASGDVVLRTLADALRANVRNVDLPARLGGEEFAVL 490

Query: 184 ALGSSEQEAAILANDLRKIIENS---QINISSGPSIHITISAGIAERCHKEP--ISTIIY 238
              +   +AA LA  LR  ++      ++     SI  T S G+A+    EP  + +++ 
Sbjct: 491 LPRTGIADAANLAEKLRLALQALVCEPVDSDDTASIRFTASFGVAQIAPDEPGNLDSLLM 550

Query: 239 RADQALYVAKKSGRNRVVC 257
            ADQ LY AK  GRN+VV 
Sbjct: 551 VADQRLYAAKAGGRNKVVW 569


>gi|318041790|ref|ZP_07973746.1| diguanylate cyclase [Synechococcus sp. CB0101]
          Length = 394

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 66/200 (33%), Positives = 106/200 (53%), Gaps = 16/200 (8%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           LV  L LV + +T   L+  +   +L EL         L++ D LSG+LN  AF+ +   
Sbjct: 188 LVFLLGLVPLFLTTGALVLVVRRQLLPELIS-------LAQTDSLSGVLNRGAFLEAADE 240

Query: 125 Y------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                  ++ + +   DID+FK IND +GH  GD+VI  ++D L         VGRLGG+
Sbjct: 241 RLELPGLDQPMVVALIDIDHFKTINDTYGHAAGDEVIRRMADFLNGAVRRGDLVGRLGGD 300

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTI 236
           EFA   + ++  +A  L   LR+ + + +  ++ G    +T+S G+ E     ++ +S +
Sbjct: 301 EFA-LLVAAAAPQAHDLLERLRQRVASQRWTLADGSEPQLTLSIGMVEKGSEGRQHLSEL 359

Query: 237 IYRADQALYVAKKSGRNRVV 256
           +  AD ALYVAK  GRN+V+
Sbjct: 360 LQAADAALYVAKDQGRNQVM 379


>gi|238920210|ref|YP_002933725.1| hypothetical protein NT01EI_2319 [Edwardsiella ictaluri 93-146]
 gi|238869779|gb|ACR69490.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 351

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 67/267 (25%), Positives = 114/267 (42%), Gaps = 24/267 (8%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFI-------ANIFLFYIGLTPFYGL 61
           L+ WL +      F      +  ++F  + +A V+            F+  I L   + L
Sbjct: 90  LTAWLLNFITTGGF------VLDNLFIGMMLAPVLLARVWRRNTLRTFILCISLVTLFRL 143

Query: 62  EYIL---VENLSL--VIISITIS---LLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
             ++      + L  V++  TIS   LL+ Y + ++ +    +Y  +S+ +  D L+   
Sbjct: 144 LIVIPYVTRRIYLLDVLLHQTISYFCLLVCYQTLALKQRSISAYFTLSESALRDQLTQTN 203

Query: 114 NHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           N          L        I   DID FKQIND +GH  GD+V+  ++           
Sbjct: 204 NRQGLQQQILRLEHSRSACCIAMIDIDNFKQINDRYGHLCGDRVLTAIAAIASQTLQPRD 263

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
           ++ R GGEEF     G + + A      +R+ I  + + +     I  + S G++    +
Sbjct: 264 YMARFGGEEFVILFPGKTLERANARCEQIRQAICATPLYLCHDQQIRASASFGLSYFDGR 323

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVC 257
           + +   I RAD ALY AK+ G+NRV C
Sbjct: 324 DSLQQAIARADGALYRAKRRGKNRVEC 350


>gi|229522172|ref|ZP_04411589.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
 gi|229341097|gb|EEO06102.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
          Length = 495

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 14/215 (6%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           F +YI +       + +    +L  ++I+  + LG +  + +        R+  ++  D 
Sbjct: 286 FQWYIIVEQKDEFNHDIWFKATLGNLAISAFVALGVLGLAQMS-FRGYQKRLEDMAVRDK 344

Query: 109 LSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+G  N   F              +  LS+   D+D+FKQ+NDN+GHP GD V+  +   
Sbjct: 345 LTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPAGDLVLQRVVAL 404

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                     + R GGEEF       ++QEA      +R  I              +T+S
Sbjct: 405 CQRHIAQVGTLCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMHA------SQPQVTVS 458

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ +    E +  +  RADQA+Y AK  GRN+VV
Sbjct: 459 IGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 493


>gi|134096240|ref|YP_001101315.1| hypothetical protein HEAR3085 [Herminiimonas arsenicoxydans]
          Length = 540

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 96/199 (48%), Gaps = 11/199 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GS 124
           +I   T S L   + G  +     +  R+  ++  D L+ L N +     L         
Sbjct: 77  MIAYETGSALELLLVGRDISHRQKTEERLRHMATHDELTNLPNRALLADRLSMGMAQARR 136

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
            N   S++  D+D FK++ND  GH VGD ++   + +L         + R+GG+EF A  
Sbjct: 137 TNIGFSVIALDLDGFKKVNDALGHAVGDALLRIAAGRLRETLRDVDTLARVGGDEFVAVL 196

Query: 185 LGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQ 242
            G+ ++  A + N  R++I   Q+    +  +++++ S G+A    H +    ++  AD 
Sbjct: 197 PGAIDE--AEIQNVARRMISALQLPFEINDDTLYVSASIGVAIYPIHGDSEVKLLAHADA 254

Query: 243 ALYVAKKSGRNRVVCFSDI 261
           A+Y AK++G+ R + ++++
Sbjct: 255 AMYRAKETGKARCIIYNEL 273


>gi|78357561|ref|YP_389010.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219966|gb|ABB39315.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 751

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 9/183 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDI 136
           Y++   +        R+ + +  D L+G+ N         A ++    +   L+ +  DI
Sbjct: 567 YVTARDISRQKAHERRLHEQASTDELTGIFNRRRVLDIGKAEMARSRRFGRPLACLMIDI 626

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FKQIND +GH  GD V+  ++  L         +GRLGGEEF      +  + A   A
Sbjct: 627 DHFKQINDTYGHVAGDAVLRGVTATLSAGLRQSDTLGRLGGEEFIVFMPETDAEGAMHTA 686

Query: 197 NDLRKIIENSQINIS-SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254
             LR+ +E S + +   G S  IT+S G+         +   I  AD ALY AK++GRNR
Sbjct: 687 ERLRQAVEQSSVLMDGEGASPGITVSLGVTVLAPETASLDAFIAAADAALYRAKENGRNR 746

Query: 255 VVC 257
           V  
Sbjct: 747 VEF 749


>gi|307721799|ref|YP_003892939.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
 gi|306979892|gb|ADN09927.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
          Length = 338

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 13/180 (7%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           +  S + E       +  L+  D L+ + N   F             YN   S+V FDID
Sbjct: 164 VILSDITEQEHYKKELESLAINDALTNIGNRRFFHQKFDEQIVLTQRYNHPFSLVIFDID 223

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK++NDN+GH +GDKV+   +  +  +        R+GGEEF      +++ +A +LA 
Sbjct: 224 FFKKVNDNYGHDMGDKVLVEYTKYISSILRDTDIFCRIGGEEFIVILPNTTKDKAYLLAQ 283

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            LR+ +EN +        + IT+S G+A     +  ++I  R D ALY AK++GRN+VV 
Sbjct: 284 KLRESVENYK------EILPITMSFGVAGYEKGDDDTSIYKRVDVALYKAKETGRNKVVL 337


>gi|294636584|ref|ZP_06714945.1| putative diguanylate cyclase/response regulator [Edwardsiella tarda
           ATCC 23685]
 gi|291090171|gb|EFE22732.1| putative diguanylate cyclase/response regulator [Edwardsiella tarda
           ATCC 23685]
          Length = 318

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 10/175 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L +  + + QL+ +D L+G+ N   F +           Y   LS++ FD+D FK  ND 
Sbjct: 137 LKMQSDLLRQLAYLDGLTGVYNRRYFDTQFSHEWHHVQRYQTPLSLILFDVDRFKDYNDR 196

Query: 146 FGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD  +  ++  L   +      V R GGEEF      ++  +A   A  +R  ++
Sbjct: 197 YGHLRGDDALRQVAAALRGALTHPGDLVARYGGEEFICLLPATALIDAQACAERIRNSVQ 256

Query: 205 NSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              I    G    +T+SAG+  A        +  + + D  LY AK  GRNR   
Sbjct: 257 ALSIEHPGGSVPFLTVSAGVCCATLTGDAQAADFLQQTDSLLYQAKAQGRNRCCA 311


>gi|226309459|ref|YP_002769421.1| hypothetical protein RER_59740 [Rhodococcus erythropolis PR4]
 gi|226188578|dbj|BAH36682.1| hypothetical membrane protein [Rhodococcus erythropolis PR4]
          Length = 510

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 116/243 (47%), Gaps = 20/243 (8%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG-SILK 91
           +   + IA +  I  +    +G      L+ ++V     V++   +  +L  +   ++L+
Sbjct: 277 LLPYLLIAVIATIVTVQALIVG-----NLDAVVVILGVGVLVLALVRQILTLLENDALLQ 331

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLS-----IVFFDIDYFKQIND 144
           ++  + + +   +  D L+ L N +AF     S   N +L+     ++  D+D FKQ+ND
Sbjct: 332 QISAAQDELRYRAHHDPLTELANRAAFDEHFASAIENYRLTNSDWVLMLVDLDDFKQVND 391

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GHP GD+++  L+ +L        FV R GG+EF     G    +A ++A  +   + 
Sbjct: 392 RYGHPAGDRLLVALTARLREAVPESAFVARFGGDEFTVLLQG-PIDDAVVVARRIVDALS 450

Query: 205 NSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           + Q   ++  S+ +  S G+A+    +       ++ RAD A+Y AK+SG+  VV + D 
Sbjct: 451 SDQ---TADTSVSVGASVGVAQFELADEPLSAHALLRRADAAMYEAKRSGKGAVVVYCDR 507

Query: 262 ENN 264
             +
Sbjct: 508 RED 510


>gi|222112641|ref|YP_002554905.1| diguanylate cyclase [Acidovorax ebreus TPSY]
 gi|221732085|gb|ACM34905.1| diguanylate cyclase [Acidovorax ebreus TPSY]
          Length = 395

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 113/258 (43%), Gaps = 20/258 (7%)

Query: 9   LSIW-LCHEKNLESFSPHTFM-IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILV 66
           + +W L  E+   S    T + +   +   +     +  A   +   GL     ++ I  
Sbjct: 130 MVLWSLWRERPAASLRGATLLSVGLVMEVLLLGVRGMLAATRDIPVEGLMQGNAMQSITF 189

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-- 124
               +V+I  ++  +L      + K+   + NR    +  D L+GL+N  + I +L    
Sbjct: 190 MAAFVVVILSSLGFIL------MGKDRSDADNR--YFAAHDALTGLVNRRSLIMALERDV 241

Query: 125 -----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                  E  +++  DID+FK +ND+ GH  GD V+  ++D L         VGR GGEE
Sbjct: 242 ARAVRLREPYAVMLVDIDHFKFVNDSHGHLAGDSVLRHVADLLRTRLRAQDLVGRYGGEE 301

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTII 237
           F      +    A  LA  LR+ +E     +  G  I +T+S G+        +    ++
Sbjct: 302 FMVLLPHTPLGGALELAETLRRAVERLPC-VGGGKDIPVTVSIGVCGGPLQPADGWDRLV 360

Query: 238 YRADQALYVAKKSGRNRV 255
             AD+ALY AK +GRNRV
Sbjct: 361 QGADEALYAAKLAGRNRV 378


>gi|192291678|ref|YP_001992283.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           TIE-1]
 gi|192285427|gb|ACF01808.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           TIE-1]
          Length = 883

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 61/186 (32%), Positives = 90/186 (48%), Gaps = 21/186 (11%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQIN 143
           + E   S +RI  L+  D L+GL N S+F   LG         ++L++++ DID FK +N
Sbjct: 436 ITERKRSDSRIHHLAHYDDLTGLPNRSSFRKHLGEALNLIEPGDQLALLYIDIDEFKIVN 495

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GHPVGD+++  L+D+L    G   +V RLGG+EFA              A+D+R+ +
Sbjct: 496 DTLGHPVGDQLLQALADRLRNCVGPDDYVARLGGDEFAVVMAD---------ASDIREFV 546

Query: 204 ENSQINISS-----GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              Q  +       G  +    S GIA    H   +  +I +AD ALY AK  GR     
Sbjct: 547 AKLQATLRDSIDCAGQVLSPDASIGIALAPDHSCEVDDLIAKADLALYAAKAEGRRTYRF 606

Query: 258 FSDIEN 263
           F    +
Sbjct: 607 FMPEMD 612


>gi|17229908|ref|NP_486456.1| hypothetical protein all2416 [Nostoc sp. PCC 7120]
 gi|17131508|dbj|BAB74115.1| all2416 [Nostoc sp. PCC 7120]
          Length = 332

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 65/208 (31%), Positives = 109/208 (52%), Gaps = 13/208 (6%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
            + L   ++   +L++   T+    G       ++L    + +S ++  D L+ L N  A
Sbjct: 114 IWQLPTEVMATHNLMLGQFTV----GLRKAQKYRDLLQKNHILSAIALADSLTELNNRRA 169

Query: 118 F-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
                   I+   S N  LS+V  D+DYFK++ND +GH +GD+++  L  +L     +  
Sbjct: 170 LEWDLPRQITKARSQNLPLSLVILDVDYFKKVNDQYGHLIGDRLLQSLCTRLRHNLRSQD 229

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERC 228
              R GGEEF      ++ +EA I+A+ L +I+   Q +I+S   I +TIS G+A  E  
Sbjct: 230 TPFRYGGEEFVVILANTTGEEAMIVADRLNRIVGEQQFSINSKLMISVTISLGVACLETD 289

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256
             E  +++++RADQ L  AK SGRN+V+
Sbjct: 290 DDEQGNSLLHRADQCLLAAKASGRNQVI 317


>gi|260599727|ref|YP_003212298.1| hypothetical protein CTU_39350 [Cronobacter turicensis z3032]
 gi|260218904|emb|CBA34259.1| hypothetical protein CTU_39350 [Cronobacter turicensis z3032]
          Length = 495

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 102/227 (44%), Gaps = 25/227 (11%)

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE---------LFISYNRI 100
            ++    P   L  +L       ++ I   L+L  I  S+  +         L  S + +
Sbjct: 258 AWWRNNIPTLALNAVL-----FGVVLIFGVLVLRQIRASLRYQRELIGLRDDLTRSNHIL 312

Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
             L+ +D L+GL N   F       I+   +    +S+V FDIDYFK  ND  GH  GD 
Sbjct: 313 QDLALLDGLTGLANRRQFDIYLEQCITRAQATGAPVSLVMFDIDYFKIYNDTQGHVAGDA 372

Query: 154 VIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            +  + D L  +       V R GGEEFA    G+    A  +A    + I +++++  +
Sbjct: 373 CLKAVGDILRHLPLHNTDRVARYGGEEFAIILPGADAHAAQRVALRALEAIHHARLSHPA 432

Query: 213 GP--SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            P     +TISAG A     +    T+  RAD ALY AK++GRN VV
Sbjct: 433 TPREEKVLTISAGAATVTGGDVNGETLKSRADDALYQAKRAGRNCVV 479


>gi|218889025|ref|YP_002437889.1| putative sensory box/GGDEF domain/EAL domain protein [Pseudomonas
           aeruginosa LESB58]
 gi|218769248|emb|CAW25008.1| putative sensory box/GGDEF domain/EAL domain protein [Pseudomonas
           aeruginosa LESB58]
          Length = 760

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 10/180 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFK 140
           S L  +  S N +  L+  D L+GL N       +    E         +++  D+D+FK
Sbjct: 315 SDLSSIKRSENELDFLAHHDSLTGLPNRVLLRERIEQALENGKDRTVAGALLLIDLDHFK 374

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND+ GH  GD ++  +S +L         + RLGG+EFA        +  A L+  + 
Sbjct: 375 HINDSLGHTTGDMLLKEVSKRLQHQLDERCLLSRLGGDEFAILVENDDPEAVARLSQRIL 434

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
               N+  +I   P I+I+ S G++        +  ++  AD AL+ AK SGRN    ++
Sbjct: 435 DGF-NAPFDIHCQP-IYISASLGVSLYPEDASDVDHLMQHADAALFQAKDSGRNAYAFYT 492


>gi|119487017|ref|ZP_01620889.1| regulatory components of sensory transduction system [Lyngbya sp.
           PCC 8106]
 gi|119455946|gb|EAW37080.1| regulatory components of sensory transduction system [Lyngbya sp.
           PCC 8106]
          Length = 321

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQIN 143
           +EL     ++  L+ +D L+ + N   F  +L     +L        ++  DID FK  N
Sbjct: 133 QELEEKNKQLLILATLDGLTKIPNRRCFDETLNQEWLRLCREQKSLHLILCDIDCFKNYN 192

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD+ +  ++  L  V   P   V R GGEEFA     +S Q A  +A  +++ 
Sbjct: 193 DTFGHIAGDQCLIKVAQTLYEVVRRPADLVARYGGEEFAIILPNTSAQGAIYIAERIQEA 252

Query: 203 IENSQINISSG-PSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++   I  S+   S ++T+S GIA    C +E   ++I  +DQALY AK  G+NR + 
Sbjct: 253 MQKLAIPHSASLVSSYVTLSMGIAGGIPCCEESPLSLIDISDQALYQAKMEGKNRFIL 310


>gi|42779774|ref|NP_977021.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987]
 gi|42735691|gb|AAS39629.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987]
          Length = 568

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 89/175 (50%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQA-- 250

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 251 PFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 305


>gi|92112928|ref|YP_572856.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Chromohalobacter salexigens DSM 3043]
 gi|91796018|gb|ABE58157.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Chromohalobacter salexigens DSM 3043]
          Length = 781

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 20/200 (10%)

Query: 74  ISITISLLLGYISGSILKELFIS----YNRISQLS-RIDCLSGLLNHSA----FISSLGS 124
           ++  +S  L  +   I +E   +      R+   +  ID L+GL N       F   L +
Sbjct: 322 LATLLSPFLQTVVTLIERERLDAANQEKQRLLHEAINIDGLTGLPNRRLLNDLFQEELAA 381

Query: 125 YNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             ++   +S+ F D+D FK IND+ GH VGD V+  ++D+L         V RLGG+EF 
Sbjct: 382 VRQRRGSISVCFLDLDGFKSINDSQGHAVGDNVLKCVADRLRGAVRHHDVVARLGGDEFV 441

Query: 182 AAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-IIYR 239
           A             + + LR+ +         G  + ++ S GI    + +  S  ++  
Sbjct: 442 AILRDVEHPRVYRHILDQLRRPM------HIHGHPLELSASMGITRYPNDDSDSDLLLRH 495

Query: 240 ADQALYVAKKSGRNRVVCFS 259
           ADQA+Y AK+SG+N    F 
Sbjct: 496 ADQAMYTAKESGKNCYHFFD 515


>gi|332992119|gb|AEF02174.1| hypothetical protein ambt_03100 [Alteromonas sp. SN2]
          Length = 399

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 12/175 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQINDNFG 147
                 +  L+  D L+   N       +          E   ++  DIDYFK IND++G
Sbjct: 224 KQHNRELDYLATRDPLTNCFNRRVLFDLMERDFARKPKPEDYCVIMIDIDYFKSINDSYG 283

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD V+  ++  L         V R GGEEF      +S  +A  +A ++R+ I+  +
Sbjct: 284 HTIGDLVLRGVAKTLQKCVRQNDIVARFGGEEFCIVLPDTSSHQAMRIAENMRETIQVCR 343

Query: 208 INISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            +      I IT S G++  R +    S  I +AD AL+ +K  GRNRV  +S+ 
Sbjct: 344 FD-----DIAITCSLGVSSIRFNATTPSEFIDQADLALFKSKSLGRNRVTLWSEA 393


>gi|315125666|ref|YP_004067669.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas sp. SM9913]
 gi|315014180|gb|ADT67518.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas sp. SM9913]
          Length = 564

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 89/188 (47%), Gaps = 8/188 (4%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEK 128
           I ++  L     +  +ELF     + + + +D L+G LN       L          N  
Sbjct: 377 IALNTSLEQRIQARTQELFTLNKELEKQANVDPLTGCLNRRTLYRFLTDELLKTQDGNTY 436

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +S++  DID+FK INDN+GH  GDK +  L++ L  +      V RLGGEEF      ++
Sbjct: 437 ISLLMLDIDHFKAINDNYGHEAGDKGLKELANILHGLTRKNDAVFRLGGEEFLIIMPNTN 496

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           + EA   A  ++  +   ++   +  +I  T+S G+        + + +   D  LY AK
Sbjct: 497 KAEAKQAAERIKNAVNEHKVYYRN-KNISFTVSIGLLTHDGTISLQSSLKYVDDYLYEAK 555

Query: 249 KSGRNRVV 256
            SGRN++V
Sbjct: 556 NSGRNKIV 563


>gi|90407639|ref|ZP_01215819.1| sensory box/GGDEF family protein [Psychromonas sp. CNPT3]
 gi|90311230|gb|EAS39335.1| sensory box/GGDEF family protein [Psychromonas sp. CNPT3]
          Length = 325

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 101/215 (46%), Gaps = 19/215 (8%)

Query: 57  PFYGLEYILVENLSLVIIS------ITISLLLGYISGSILKEL--FISYNRISQLSRIDC 108
           P       + +N++ + +S        I +++  ++   L  L    ++ ++   S  D 
Sbjct: 100 PITSNATFMYQNVTFLPLSDIVGKVTQICMIIYDVTDVALNRLALHEAHKKLEHDSHTDS 159

Query: 109 LSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ L NH  +               + +S++  DID+FK IND +GHP GDKV+  ++  
Sbjct: 160 LTQLHNHGFWKECCQQEYKRYIRTQQNVSLLMIDIDHFKNINDTYGHPFGDKVLQDVAQA 219

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +     +    GR GGEEF+   + S  ++A ++A  +  +I+           I +TIS
Sbjct: 220 IQQQMRSIDIAGRYGGEEFSVLLIDSDLEQAKVVAKRISDVIKALSF---KDKEIELTIS 276

Query: 222 AGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
            GIA    K E     I  AD+ LY+AK +GR+++
Sbjct: 277 IGIASLNKKIESYQQWINIADKGLYIAKNAGRDQI 311


>gi|71278624|ref|YP_271328.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71144364|gb|AAZ24837.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 266

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 111/235 (47%), Gaps = 14/235 (5%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           +I  ++F SI I+T++F+    + +      Y  E+ L    S + ++  +S L  Y   
Sbjct: 35  LIDIAVFVSI-ISTLMFMPTDIIAHAN----YSTEFKLRLLYSFLTVTF-LSALYEYSRN 88

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHS-AF------ISSLGSYNEKLSIVFFDIDYFK 140
              +       +  QL+  D L+ L N   A        + +    E LSI+  D+DYFK
Sbjct: 89  KSYQHTLELSKKYQQLAHFDPLTQLSNRRDALGILKQEQARMIRSKEPLSIIICDVDYFK 148

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD V+  L+            V R GGEEF      +  + A + A  ++
Sbjct: 149 KINDQYGHNAGDAVLIELAKIFTSNIREQDCVARWGGEEFLFILPQTLARNANVFAVKIQ 208

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + ++N  ++   G  I +++S GI +    + I  II  AD+ LY AK SGRN++
Sbjct: 209 EKLQNHLVDY-QGKEIKVSVSMGIEQFNGNQNIDEIINSADKYLYQAKNSGRNQI 262


>gi|315123129|ref|YP_004065135.1| sensory box protein [Pseudoalteromonas sp. SM9913]
 gi|315016889|gb|ADT70226.1| sensory box protein [Pseudoalteromonas sp. SM9913]
          Length = 695

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 11/189 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
            +    + E   S   I   +  D L+ L N    +  L          +EK ++ F D+
Sbjct: 246 MVIIRDISEPHRSAELIRHQAHFDSLTDLPNRFLSLDRLSQILLEVQKSHEKAAVFFLDL 305

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FK++ND+ GH VGD+++   + +L         +GRLGG+EF       + E +A  +
Sbjct: 306 DDFKKVNDSLGHEVGDELLIAAAARLQQTLKKSDTIGRLGGDEFIVLISNLNDENDALAI 365

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254
           A  L +     +     G  + +T+S GIA         S ++  AD A+Y AK  GRN 
Sbjct: 366 AERLLQAFR--KPFKLVGRDLILTLSIGIAISPKDGTCASVLLRNADTAMYQAKTMGRNT 423

Query: 255 VVCFSDIEN 263
              F+   N
Sbjct: 424 SSFFTPQMN 432


>gi|260221718|emb|CBA30562.1| hypothetical protein Csp_C24170 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 519

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 8/173 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           L +L    +R+S  +R D L+G LN      +L             LS+   DID FK++
Sbjct: 345 LAKLHKELDRVSLQARHDALTGALNRKGLDEALNREISTMRRNESVLSVALLDIDNFKKL 404

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD  +  L+            + R GGEEF      +   +       L++ 
Sbjct: 405 NDTLGHATGDVALTHLAAVAKECMRPQDTLARYGGEEFVILLPDTPLDKGIEAMTRLQRE 464

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   +  ++    + IT SAG+A+   +E  +  I RADQA+Y+AK++G+NRV
Sbjct: 465 L-TKRFFLAGTEKVLITFSAGVAQVLAEEEPADAIRRADQAMYLAKRAGKNRV 516


>gi|206968481|ref|ZP_03229437.1| sensory box/GGDEF family protein [Bacillus cereus AH1134]
 gi|206737401|gb|EDZ54548.1| sensory box/GGDEF family protein [Bacillus cereus AH1134]
          Length = 567

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 89/175 (50%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ +   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDDMRQLATSVLSCFQA-- 250

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             I  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 251 PFILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 305


>gi|172039090|ref|YP_001805591.1| hypothetical protein cce_4177 [Cyanothece sp. ATCC 51142]
 gi|171700544|gb|ACB53525.1| hypothetical protein cce_4177 [Cyanothece sp. ATCC 51142]
          Length = 850

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 17/208 (8%)

Query: 67  ENLSLVIISITISLLLGY------ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +N SL+ ++  ISL          +    +++   +   +      D L+ L N   F  
Sbjct: 369 QNGSLLAVAGKISLTTYQGQEVLCLIVRDIRDRKQAEEELQYQLLHDPLTNLPNRELFKQ 428

Query: 121 SL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L         +   L+++F DID F  IN+  GH +GDKV+    ++L         V 
Sbjct: 429 QLGVALAHAQRHEHLLAVIFIDIDSFTHINNTLGHSLGDKVLQSFGERLSSCIRAGDTVT 488

Query: 174 RLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R G +EF        + ++   LA  + + ++  +  +     + I  S GIA      +
Sbjct: 489 RWGSDEFVLLLPQIKNTEDTVKLAQRIFETLQ--RPFVLDEHRLQIKCSIGIAIYPQDGD 546

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++  AD ALY  K+ GRN    +S
Sbjct: 547 NAEGLLKNADTALYRTKEQGRNHYQFYS 574


>gi|197251011|ref|YP_002145365.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197214714|gb|ACH52111.1| AdrA protein [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
          Length = 370

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 104/232 (44%), Gaps = 12/232 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            F++ +  ++    + L   GL P       L   LSL +I +   LL  ++S     +L
Sbjct: 141 LFTVGMGLLLASCLVTLQLTGL-PVAMRSSSLEVTLSLPVIML-YPLLFAWVSYQTAIKL 198

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
                R+  +S  D ++G+ N   +             ++ + +++  DID+FK IND +
Sbjct: 199 AEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFDHSRRHHREATLLIIDIDHFKSINDTW 258

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ I  L+ QL +       +GR GG+EFA    G+    A    + + + +   
Sbjct: 259 GHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEFAVIMCGTPADSAITAMSRVHERLNTL 318

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++     P + + IS G+A    +       +  AD ALY AK +GRNR   
Sbjct: 319 RLP--GAPQVMLRISVGVAPLTPQIGHYREWLKSADMALYKAKNAGRNRTEV 368


>gi|218779937|ref|YP_002431255.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01]
 gi|218761321|gb|ACL03787.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01]
          Length = 399

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 111/234 (47%), Gaps = 14/234 (5%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
           +    +   +A +++  N+   Y G    +G++ I +   +++ ++++  L   ++    
Sbjct: 167 FCLFLYLSNMAVMVYFVNVAADYTGKD--FGIQQINIVTFTVLAVALSRVLYYAHVRDFK 224

Query: 90  LKELFISY-NRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
            ++L  S   R+ +LS  D L+ +LN  +F             +   LS++ FD D FK 
Sbjct: 225 NRKLIKSQKQRLLELSNKDHLTNVLNRRSFAEISEVETARSRRHAGPLSLIIFDFDNFKC 284

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH  GD V+   ++ +         + R GGEEF   +  ++ ++AA LA+ LR 
Sbjct: 285 INDQSGHSAGDAVLVHTAELIQQNIRKTDILFRWGGEEFIILSPETALEDAAALADKLRL 344

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +IE           +  T S G A+  H E I   I RAD+ALY AK  GRN V
Sbjct: 345 LIEEYTFP----HGVKATASFGAAQYTHGESIEDTIQRADKALYQAKTKGRNCV 394


>gi|149909028|ref|ZP_01897687.1| sensory box/GGDEF domain protein [Moritella sp. PE36]
 gi|149808039|gb|EDM67982.1| sensory box/GGDEF domain protein [Moritella sp. PE36]
          Length = 550

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 101/220 (45%), Gaps = 20/220 (9%)

Query: 58  FYGLEYILVENLSLVIISITISLLL---GYISGSI-----LKELFISYNRISQLSRIDCL 109
           ++G  +   +N +     ++IS ++   G IS  I     +        +I +++  D L
Sbjct: 319 WHGETFNRTKNGAYYWSLMSISPVMDDNGEISHFISVSEDITTQKDQQIKIEKIALYDPL 378

Query: 110 SGLLNHSAFISSLGS-----YNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +GL N       L       + ++   + ++  D+DYFK IND +GH VGD+++  ++ +
Sbjct: 379 TGLANRRLLYDRLNQSTEILHRQQDAGIGVIMLDLDYFKLINDTYGHDVGDELLKEVALR 438

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITI 220
           L     +   V R GG+EF       S  ++   +A  + + +  S INI    S  IT 
Sbjct: 439 LTDCVRSEDTVSRPGGDEFTILLQDVSHPEDIKPVAQKMLQSLRRS-INI-DKYSFKITC 496

Query: 221 SAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           S G++    H      ++  AD ALY AK  GR+ V  FS
Sbjct: 497 SIGVSIAPSHTIEPKLLLKYADLALYRAKDCGRDNVQFFS 536


>gi|189426101|ref|YP_001953278.1| diguanylate cyclase [Geobacter lovleyi SZ]
 gi|189422360|gb|ACD96758.1| diguanylate cyclase [Geobacter lovleyi SZ]
          Length = 410

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 107/241 (44%), Gaps = 33/241 (13%)

Query: 48  IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY-----------ISGSILKELFIS 96
           + +   G+T +   +       +L  + IT ++LL +            + S++  L I 
Sbjct: 168 MLVAAAGITLWKAWQRPAPVEGALFGVVITFAVLLAWPAVPFVTTIFSGTASLILVLAII 227

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
            +    ++  D ++GL +  A    L     + +I   D+D+FK+ ND +GH VGD+V+ 
Sbjct: 228 QDS-HNMAFRDDMTGLPSRRALNELLRGLGSRYAIAMVDVDHFKRFNDTYGHDVGDQVLK 286

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS---- 212
            ++ +L+ V G      R GGEEF     G S ++AA     LRK IE  ++ + S    
Sbjct: 287 VVAGRLMAVSGGG-RPFRYGGEEFTVIFPGKSAKDAAPHLERLRKAIEEYKMALRSDDRP 345

Query: 213 ---------------GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
                             + +T+S G+AE   +      +I  AD ALY AK  GRN+V 
Sbjct: 346 KDDSKGQVSRNRQYASRDVSVTVSIGVAESGSRYTTAEEVIRAADSALYRAKNGGRNQVC 405

Query: 257 C 257
            
Sbjct: 406 L 406


>gi|87199456|ref|YP_496713.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87135137|gb|ABD25879.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 896

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 61/193 (31%), Positives = 86/193 (44%), Gaps = 16/193 (8%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           SG+ L E   S    S+L+  D L+GL N      +L          +   ++   D+D 
Sbjct: 336 SGTDLTEKRRSQEHASRLAHFDSLTGLSNRFRMSQTLEKILLAPQVQHRACAVFLLDLDR 395

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILAN 197
           FKQ+ND  GHP GD ++  ++ +L  V G    VGRLGG+EF     G  E+ +   +A 
Sbjct: 396 FKQVNDTLGHPAGDALLKQVAQRLERVVGKIGRVGRLGGDEFEVILPGKMERGQLGHMAG 455

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            + + +  SQ     G  + I  S GIA           +I  AD ALY AK  GR R  
Sbjct: 456 RIIESL--SQPYSIEGSRVMIGASVGIALAPDDGVTSEALIRNADLALYAAKDGGRGRFH 513

Query: 257 CF-----SDIENN 264
            +     SD E  
Sbjct: 514 FYAPDLHSDAEER 526


>gi|229507700|ref|ZP_04397205.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229512105|ref|ZP_04401584.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229519240|ref|ZP_04408683.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229524220|ref|ZP_04413625.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|229528771|ref|ZP_04418161.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229607204|ref|YP_002877852.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|229332545|gb|EEN98031.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229337801|gb|EEO02818.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|229343929|gb|EEO08904.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229352070|gb|EEO17011.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229355205|gb|EEO20126.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229369859|gb|ACQ60282.1| GGDEF family protein [Vibrio cholerae MJ-1236]
          Length = 495

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 14/215 (6%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           F +YI +       + +    +L  ++I+  + LG +  + +        R+  ++  D 
Sbjct: 286 FQWYIIVEQKDEFNHDIWFKATLGNLAISAFVALGVLGLAQMS-FRGYQKRLEDMAVRDK 344

Query: 109 LSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+G  N   F              +  LS+   D+D+FKQ+NDN+GHP GD V+  +   
Sbjct: 345 LTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPAGDLVLQRVVAL 404

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                     + R GGEEF       ++QEA      +R  I              +T+S
Sbjct: 405 CQRHIAQVGTLCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMHA------SQPQVTVS 458

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ +    E +  +  RADQA+Y AK  GRN+VV
Sbjct: 459 IGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 493


>gi|254243382|ref|ZP_04936704.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126196760|gb|EAZ60823.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 760

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 10/180 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFK 140
           S L  +  S N +  L+  D L+GL N       +    E         +++  D+D+FK
Sbjct: 315 SDLSSIKRSENELDFLAHHDSLTGLPNRVLLRERIEQALENGKDRTVAGALLLIDLDHFK 374

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND+ GH  GD ++  +S +L         + RLGG+EFA        +  A L+  + 
Sbjct: 375 HINDSLGHTTGDMLLKEVSKRLQHQLDERCLLSRLGGDEFAILVENDDPEAVARLSQRIL 434

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
               N+  +I   P I+I+ S G++        +  ++  AD AL+ AK SGRN    ++
Sbjct: 435 DGF-NAPFDIHCQP-IYISASLGVSLYPEDASDVDHLMQHADAALFQAKDSGRNAYAFYT 492


>gi|120554257|ref|YP_958608.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter aquaeolei VT8]
 gi|120324106|gb|ABM18421.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter aquaeolei VT8]
          Length = 575

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 11/184 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L+E   +   + + +  D L+GL N     S L S        N +++++F D+D FK I
Sbjct: 132 LEEQTQTKAELVRRASFDDLTGLPNRRLMESELESRLAEADRCNREVAVIFMDLDNFKLI 191

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRK 201
           ND  GH  GD ++  ++D L         + R GG+EF          +    L   L K
Sbjct: 192 NDTLGHYQGDSLLKSVADTLKQELRHSDLLCRFGGDEFVLLLFDFHGPEGIHELLQRLVK 251

Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +E S++ +  G    ++ S G++   H     + ++  AD A+Y AK+ G+N V  ++ 
Sbjct: 252 ALE-SKVQLH-GDCYQVSASFGVSLYPHNGGTAAELMGNADAAMYRAKEIGKNTVCFYTS 309

Query: 261 IENN 264
             N+
Sbjct: 310 DIND 313


>gi|331014324|gb|EGH94380.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 492

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 96/214 (44%), Gaps = 13/214 (6%)

Query: 64  ILVENLSLVIISITISLLLGYI---SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +LV +LS++ I++   +L  ++   +  +   L  + + ++  +  D L+GL N +    
Sbjct: 220 VLVASLSVLSITLFCCILDSHLETRTAVLANSLVEANHELTHRALHDSLTGLPNRTLLTD 279

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            +     K        +++F D+D FK +ND FGH  GD ++  ++ +L         + 
Sbjct: 280 RIEQTMNKVRENGGCFALMFMDLDGFKPVNDAFGHHTGDLLLRQVALRLRQNLHLHDTLA 339

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           R+GG+EF        +Q+A  +A   R++ E           + I++S GI     +   
Sbjct: 340 RVGGDEFVLLVELQDQQDALAVAT--RQVNEIGNPFTIGEHQLQISLSIGICMYPGNGTT 397

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              ++  AD A+Y  K +G+N    F    N+  
Sbjct: 398 QHELLVNADAAMYHTKAAGKNGYSFFDVSMNSNA 431


>gi|330967255|gb|EGH67515.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 424

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 119/285 (41%), Gaps = 36/285 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL------FYIG 54
           + +S    L +WL  +    +    ++M    + +++F+ +   +   +L          
Sbjct: 133 LEQSYPVELQVWLA-DIRWPALHG-SWMSLIQLSYAMFLLSFAVLIWQYLEKPRPLHAAQ 190

Query: 55  LTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           +    GL + L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL 
Sbjct: 191 IVGLLGLFWALPKTFILPFTLNILCSQVMLMIAAAVAHEAY-------QMAFRDELTGLP 243

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A    +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        
Sbjct: 244 GRRALNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGRAY 303

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-------------------P 214
           R GGEEFA      +  E       +R+ I N  I + +                     
Sbjct: 304 RYGGEEFAIVFAAKTIDECMPHLEAIRETIANYAIQLRNKDSRPQDDQQGRQRRSGAHEA 363

Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S+ +T+S G+AER         ++  ADQALY AK +GRN VV +
Sbjct: 364 SVSVTVSIGVAERQPEHRTPEEVLKSADQALYAAKGAGRNCVVAY 408


>gi|294636778|ref|ZP_06715116.1| GGDEF protein [Edwardsiella tarda ATCC 23685]
 gi|291089993|gb|EFE22554.1| GGDEF protein [Edwardsiella tarda ATCC 23685]
          Length = 351

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 112/263 (42%), Gaps = 16/263 (6%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIAN---IFLFYIGLTPFYGLEYIL 65
           L+ WL +      F      ++  +  +  + + I+  N   +F+  I L   + L  I+
Sbjct: 90  LTAWLLNFITTGGFVLDN--LFIGLMLAPLLLSRIWQRNTLRMFILCISLVALFHLLIIV 147

Query: 66  ------VENLSLVIISITI--SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
                 +E L  ++  +     LL+ Y + ++ +    +Y  + + +  D L+   N   
Sbjct: 148 PELTQRIELLDALLHQVIAYCCLLVCYQTLTLKQRSINAYFTLRESALRDQLTQTYNRQG 207

Query: 118 FISS---LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
                  L        I   DID FKQIND++GH  GD+V+  L+           ++ R
Sbjct: 208 LQQQILTLEREQRPCCIAMIDIDNFKQINDHYGHLCGDQVLITLAKMANQTLSPQDYIAR 267

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
            GGEEF          +A      LR++I ++ + +  G    +T S G+        + 
Sbjct: 268 FGGEEFIILFAELELSQANARCEHLRRLISHAPLYLGHGQRAWVTASFGLTRFDGYSDLE 327

Query: 235 TIIYRADQALYVAKKSGRNRVVC 257
             I +AD+ALY AK+ G+NR++ 
Sbjct: 328 HAIAQADEALYRAKRQGKNRIIV 350


>gi|240138569|ref|YP_002963041.1| hypothetical protein MexAM1_META1p1954 [Methylobacterium extorquens
           AM1]
 gi|240008538|gb|ACS39764.1| hypothetical protein MexAM1_META1p1954 [Methylobacterium extorquens
           AM1]
          Length = 298

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 64/180 (35%), Positives = 91/180 (50%), Gaps = 18/180 (10%)

Query: 90  LKELFISYNRIS-------QLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFFDI 136
           L+    +  R++       +L+  D L+GLLN  AF+       +       L  V  DI
Sbjct: 112 LQARMRAAERLTTLQSDLIRLAETDSLTGLLNRRAFLQRTREAAQMAGSFGHLCAVILDI 171

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND  GH VGD  I  ++  +          GRLGGEEFA    G    EA  +A
Sbjct: 172 DHFKRINDEHGHDVGDAAIKAVAGMIEA----EGIAGRLGGEEFAVMLAGQRLTEAEAVA 227

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + LR    + +I  + GP + +T S G++E    E +  ++ RAD ALY AK +GRNRVV
Sbjct: 228 SRLRLKTSDLRIRSTKGP-VRLTCSFGVSEWSEGETVEGLLKRADIALYEAKTTGRNRVV 286


>gi|239995544|ref|ZP_04716068.1| sensory box protein [Alteromonas macleodii ATCC 27126]
          Length = 1517

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 7/184 (3%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISS---LGSYNEKLSIVFFDIDYFKQIND 144
            S +     +   + +L+  D L+ L N S F +S   L     + +++  D+D FK+IND
Sbjct: 1068 SDITSRKSTEKELLKLANTDPLTELPNRSFFQASHQNLVRKGAQHTLLCLDMDNFKKIND 1127

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILANDLRKII 203
            + GH  GD +I  ++ +L  + G      RLGG+EF+      +        A +L   +
Sbjct: 1128 SLGHQTGDILIKQIAKRLQRITGKSATCYRLGGDEFSVLMEDNADIHTVTHYAQNLLDTL 1187

Query: 204  ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              S+  I +     +  S GIA           ++  AD A+Y AK +G N    FS   
Sbjct: 1188 --SRPFIINKQEFVLGASIGIAFFPDDGTSPQEMLKNADTAMYFAKNNGGNSYQFFSGEM 1245

Query: 263  NNTC 266
            N   
Sbjct: 1246 NQNA 1249


>gi|298493108|ref|YP_003723285.1| response regulator receiver modulated diguanylate cyclase ['Nostoc
           azollae' 0708]
 gi|298235026|gb|ADI66162.1| response regulator receiver modulated diguanylate cyclase ['Nostoc
           azollae' 0708]
          Length = 338

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 11/175 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDN 145
           L  +  ++     +D L+G+ N   F          L      LS++  D+D+FK  ND 
Sbjct: 158 LLAANQQLQLFVFLDGLTGVANRRKFDEYLNSEWQRLAREKLPLSLLLCDVDFFKNYNDT 217

Query: 146 FGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD  +  ++  L   V      + R GGEEFA     ++++ A  LA D+R+ + 
Sbjct: 218 YGHLTGDDCLKQIAKTLKLSVRRPSDLLARYGGEEFAVILSNTNDKVAIYLAEDIRQKVY 277

Query: 205 NSQINISSGP-SIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
           N +I  +      ++T+S G+A       I+  T+I   DQALY AK  GRNR+V
Sbjct: 278 NLKIPHAQSKVDNYVTLSIGVATIFPNMQIAPNTLIEVGDQALYTAKAQGRNRIV 332


>gi|149925096|ref|ZP_01913407.1| FHA/GGDEF domain protein [Plesiocystis pacifica SIR-1]
 gi|149814024|gb|EDM73657.1| FHA/GGDEF domain protein [Plesiocystis pacifica SIR-1]
          Length = 307

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 12/195 (6%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYN 126
           I I  S +L +     + E F     + + +  D L+G+ N   F + L         + 
Sbjct: 107 IQIGASSVLRFTYHDDIDEDF--QRSLYESALRDRLTGVFNRGYFNNRLESDVAFALRHG 164

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           + LS+V FDID+FKQIND++GH  GD V+  L++++     +     R GGEEF      
Sbjct: 165 KPLSLVIFDIDFFKQINDDYGHAAGDAVLRDLAERVQGTTRSEDIFARYGGEEFVLICRD 224

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQAL 244
                A+  AN +++++      + +G  I I++S G+++     +     ++  AD AL
Sbjct: 225 VDALRASRAANRIKELVSGKPFRL-AGRDIEISVSLGVSDLSMLLEPSAQALVEAADSAL 283

Query: 245 YVAKKSGRNRVVCFS 259
           Y AK++GRNRV  + 
Sbjct: 284 YAAKRNGRNRVEIYD 298


>gi|15601316|ref|NP_232947.1| GGDEF family protein [Vibrio cholerae O1 biovar eltor str. N16961]
 gi|147671644|ref|YP_001215330.1| GGDEF family protein [Vibrio cholerae O395]
 gi|153819246|ref|ZP_01971913.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|153822850|ref|ZP_01975517.1| GGDEF family protein [Vibrio cholerae B33]
 gi|227812125|ref|YP_002812135.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|229506273|ref|ZP_04395782.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae BX 330286]
 gi|229509607|ref|ZP_04399089.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae B33]
 gi|229516570|ref|ZP_04406017.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae RC9]
 gi|229605823|ref|YP_002876527.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae MJ-1236]
 gi|298499353|ref|ZP_07009159.1| GGDEF family protein [Vibrio cholerae MAK 757]
 gi|9657965|gb|AAF96459.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|126510195|gb|EAZ72789.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|126519627|gb|EAZ76850.1| GGDEF family protein [Vibrio cholerae B33]
 gi|146314027|gb|ABQ18567.1| GGDEF family protein [Vibrio cholerae O395]
 gi|227011267|gb|ACP07478.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|227015393|gb|ACP11602.1| GGDEF family protein [Vibrio cholerae O395]
 gi|229346451|gb|EEO11422.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae RC9]
 gi|229353557|gb|EEO18495.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae B33]
 gi|229356624|gb|EEO21542.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae BX 330286]
 gi|229372309|gb|ACQ62731.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae MJ-1236]
 gi|297541334|gb|EFH77385.1| GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 469

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 57/214 (26%), Positives = 106/214 (49%), Gaps = 4/214 (1%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            I   ++ +   Y    + +    L++  +  +L L        ++L  +  ++S L++ 
Sbjct: 253 RILSRWVHIETIYPRYLMPILASGLLLSIVIYTLQLRRTVRLRTQQLEEANQKLSYLAKT 312

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ + N  +F   L +   +   L+++ FDID FK IND FGH  GD  I F+   + 
Sbjct: 313 DSLTDIANRRSFFEHLEAEQTRSGSLTLMVFDIDDFKTINDRFGHGAGDNAICFVVGCVR 372

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
               +  +  R+GGEEFA  A G + +E+  LA  + + +   +  +++  S+ +TIS G
Sbjct: 373 QALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKKWVVNAQHSLSLTISLG 432

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            A   H     ++ + AD  +Y  K++G+N+VV 
Sbjct: 433 CAFYLHPARPFSL-HDADSLMYEGKRNGKNQVVF 465


>gi|325272232|ref|ZP_08138652.1| diguanylate cyclase [Pseudomonas sp. TJI-51]
 gi|324102638|gb|EGC00065.1| diguanylate cyclase [Pseudomonas sp. TJI-51]
          Length = 473

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 112/248 (45%), Gaps = 17/248 (6%)

Query: 24  PHTFMIYFSIFFSIFIATVIFI---ANIFLFYIGLTPFYGLEYILVENLSLVIISITISL 80
           P   +++ +  +S F+ +++ +   + + +        + +        +L+   + I++
Sbjct: 217 PIAALLWCAWTYSPFLVSLLALTAGSTLIVAVAQNLMHFSVPQSAPGVTTLLSARLGIAM 276

Query: 81  LLG--YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--------KLS 130
           L+    +   + +       R++  + ID L+G L+ SAF     +  +         L+
Sbjct: 277 LVLGPLVVACVSQANRSLMARLAHQATIDHLTGALSRSAFTRRANALLDSRQHAQALPLT 336

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  DID+FK IND  GH VGD+V+   +  L           RLGGEEF     G + +
Sbjct: 337 LMMLDIDHFKSINDAHGHAVGDQVLRQFAGALQDQLHNNELFARLGGEEFVVVMPGLAPE 396

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVA 247
            A   A  LR+ +++  + +     + IT+S G+A          +  ++  ADQALY A
Sbjct: 397 RATFTAERLRRAVQDLHV-VQDDKCLQITVSIGVAGCEAHMPSPSLDLLLASADQALYRA 455

Query: 248 KKSGRNRV 255
           K  GRN V
Sbjct: 456 KAHGRNCV 463


>gi|313681523|ref|YP_004059261.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154383|gb|ADR33061.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
          Length = 700

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 8/171 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGH 148
                 I+ L+  D L+ L N +     L +      N   +++F D+D FK IND  GH
Sbjct: 258 KAQSEEIAFLAYHDPLTHLPNRAKLKLQLENRFEHAPNSPFALMFLDLDNFKNINDTMGH 317

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GDK++  +S ++    G   F  R GG+EF      +      + A  L ++ +  + 
Sbjct: 318 KIGDKILIEVSRRIRETVGKYDFYARFGGDEFVILLQDADSASIDLTAQKLIQVFK--EP 375

Query: 209 NISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
              +     ++ S GI            +I  AD A+Y AKK G+N+   +
Sbjct: 376 CTLNETEFFLSASIGIVLYPDDALNGDDLIKHADTAMYEAKKKGKNQFAYY 426


>gi|260767442|ref|ZP_05876379.1| sensory box/GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260617554|gb|EEX42736.1| sensory box/GGDEF family protein [Vibrio furnissii CIP 102972]
          Length = 606

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 64/187 (34%), Positives = 91/187 (48%), Gaps = 20/187 (10%)

Query: 84  YISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---------SYNEKLSIVF 133
           YI+  I + E     N++ +LS  D L+ L N   F   L          ++N    +V 
Sbjct: 424 YITSIIDISERKALENQLRELSEKDSLTHLWNRRKFEQELQTQTQLVERYAHNHDACLVL 483

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK+IND  GH  GD+VI  ++  L     +  F+ R+GGEEFA     ++  EA 
Sbjct: 484 IDIDFFKRINDEQGHDQGDRVIIQVAQILTHQLRSTDFIARIGGEEFAVIMPHTAIDEAH 543

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            + + LR  +   Q       S+ +TISAG+ +       S     AD ALY +K  GRN
Sbjct: 544 RVVDRLRAAVAIDQ-------SLTVTISAGVTDLTFDSNRS--YKCADIALYESKTLGRN 594

Query: 254 RV-VCFS 259
           RV VC S
Sbjct: 595 RVSVCHS 601


>gi|198242044|ref|YP_002214338.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197936560|gb|ACH73893.1| AdrA protein [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
          Length = 370

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 104/232 (44%), Gaps = 12/232 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            F++ +  ++    + L   GL P       L   LSL +I +   LL  ++S     +L
Sbjct: 141 LFTVGMGLLLASCLVTLQLTGL-PVAMRSSSLEVTLSLPVIML-YPLLFAWVSYQTAIKL 198

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
                R+  +S  D ++G+ N   +             ++ + +++  DID+FK IND +
Sbjct: 199 AEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFDHSRRHHREATLLIIDIDHFKSINDTW 258

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ I  L+ QL +       +GR GG+EFA    G+    A    + + + +   
Sbjct: 259 GHDVGDEAIIALTRQLQLTLRGSDIIGRFGGDEFAVIMCGTPADSAITAMSRVHERLNTL 318

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++     P + + IS G+A    +       +  AD ALY AK +GRNR   
Sbjct: 319 RLP--GAPQVMLRISVGVAPLTPQIGHYREWLKSADMALYKAKNAGRNRTEV 368


>gi|170727093|ref|YP_001761119.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169812440|gb|ACA87024.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
          Length = 651

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 93/207 (44%), Gaps = 21/207 (10%)

Query: 71  LVIISITISLLL---GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+++ + +  +L    Y   S  K L  S + + + S ID L+GL N   F+  L     
Sbjct: 443 LILVGVFLIFILVKKRYWLESHNKSLQDSNDELYKQSHIDSLTGLYNRRYFLDYLNQLTQ 502

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                  +  I   DID+FK +ND +GH +GD+V+  +S  L         V R GGEEF
Sbjct: 503 LSQRQASQACIAIVDIDHFKAVNDTYGHDMGDEVLIQISKALHANIRDSDLVVRWGGEEF 562

Query: 181 AAAA------LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
                          +E       +R  + N  + +    +I IT+S GI++    + ++
Sbjct: 563 VILLCWPQNYTSIGSEELLAKFERIRLAVCNKPL-VMDKLTIPITVSIGISQPLDAKELT 621

Query: 235 ----TIIYRADQALYVAKKSGRNRVVC 257
               + +  AD+ALY AK  GRN V+ 
Sbjct: 622 LEWHSALEHADKALYQAKGLGRNCVIM 648


>gi|52840285|ref|YP_094084.1| sensory box protein [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52627396|gb|AAU26137.1| sensory box (GGDEF/EAL domain) regulatory protein [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 985

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 87/183 (47%), Gaps = 11/183 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + +       +   +  D L+ L N    ++ L          N+KL+++F D+D FKQ
Sbjct: 545 DVTQKKSYEEMLKHQATFDNLTNLPNRLYAVNKLERAISKSHINNQKLAVLFLDLDEFKQ 604

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           IND+ GH +GD ++  LS++ + +      + RLGG+EF         +++A  +A   R
Sbjct: 605 INDSLGHAIGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILENIMQDKDAESIAKKCR 664

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +I   SQ  +     + ++ S GIA    H +   T++  AD A+Y +K  G+N    F 
Sbjct: 665 EIC--SQPFVIESQELLVSTSIGIAIYPEHGKDAKTLMRNADTAMYQSKIRGKNNWTVFQ 722

Query: 260 DIE 262
           +  
Sbjct: 723 NTM 725


>gi|300856764|ref|YP_003781748.1| putative membrane-bound protein [Clostridium ljungdahlii DSM 13528]
 gi|300436879|gb|ADK16646.1| putative membrane-bound protein with a GGDEF domain [Clostridium
           ljungdahlii DSM 13528]
          Length = 395

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 81/282 (28%), Positives = 124/282 (43%), Gaps = 35/282 (12%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIF--IANIFLFYIGLTPF-YGLEYIL 65
           + ++ C   +L        +I ++I       T IF  I  + ++ I   PF + L Y  
Sbjct: 113 MILFWCEGISLLDQLSSGQIIVYAISIIAIAVTPIFKPITLLLMYLIVHLPFLFFLPYFQ 172

Query: 66  ----------VENLSLVIISITISLLL----------GYISGSILKELFISYNRISQLSR 105
                     + + + +IIS  IS +             I      EL     ++ +LS+
Sbjct: 173 KSSDILWANCINSTTFLIISWMISCIRYKNQVDDFNNRKIIQKKNDELKRVNQKLEKLSQ 232

Query: 106 IDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+G+ N   F  ++ +  +        LS++  DID+FK  ND++GH  GD  +  +
Sbjct: 233 IDSLTGIFNRFVFDKTIEAEWDRCKRYFIPLSLIMIDIDFFKAFNDSYGHQAGDDCLRQV 292

Query: 159 SDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI 216
           S  L      +   V R GGEEFA       ++ A   A  LRK +E   I ++ S  S 
Sbjct: 293 SRVLSSSARRSSDTVARYGGEEFAVVLTHMEKESALEFAEQLRKKVEQLAIPHMYSSISN 352

Query: 217 HITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256
           +ITIS GI      +   I   I  AD+ALY AKK  RN+VV
Sbjct: 353 YITISLGICTVIPSDMLSIEQFIKTADEALYEAKKC-RNKVV 393


>gi|296124056|ref|YP_003631834.1| diguanylate cyclase [Planctomyces limnophilus DSM 3776]
 gi|296016396|gb|ADG69635.1| diguanylate cyclase [Planctomyces limnophilus DSM 3776]
          Length = 690

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 11/166 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS---------YNEKLSIVFFDIDYFKQINDNFGHPV 150
           +  ++  D L+ + N     S +            NE  S++F D D+FK IND  GH V
Sbjct: 375 LKMMASRDALTRVANRGELDSQIEQLLKKYNSESQNEVFSVIFVDADHFKSINDKHGHTV 434

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+  L+  L     +   +GR GGEEF      +  + A   +   R  I++ +   
Sbjct: 435 GDQVLVELARLLQHESYSGEIIGRYGGEEFIVLCPATDVELAVRKSERFRMSIQSMRF-- 492

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  PS+ IT S G+++  + + +++++ RAD+ALY AK++GRNR  
Sbjct: 493 ADYPSLRITASFGVSQVVNGDTVASLVERADKALYQAKQTGRNRTC 538


>gi|254849718|ref|ZP_05239068.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|254845423|gb|EET23837.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
          Length = 385

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 57/214 (26%), Positives = 106/214 (49%), Gaps = 4/214 (1%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            I   ++ +   Y    + +    L++  +  +L L        ++L  +  ++S L++ 
Sbjct: 169 RILSRWVHIETIYPRYLMPILASGLLLSIVIYTLQLRRTVRLRTQQLEEANQKLSYLAKT 228

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ + N  +F   L +   +   L+++ FDID FK IND FGH  GD  I F+   + 
Sbjct: 229 DSLTDIANRRSFFEHLEAEQTRSGSLTLMVFDIDDFKTINDRFGHGAGDNAICFVVGCVR 288

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
               +  +  R+GGEEFA  A G + +E+  LA  + + +   +  +++  S+ +TIS G
Sbjct: 289 QALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKKWVVNAQHSLSLTISLG 348

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            A   H     ++ + AD  +Y  K++G+N+VV 
Sbjct: 349 CAFYLHPARPFSL-HDADSLMYEGKRNGKNQVVF 381


>gi|149182127|ref|ZP_01860610.1| adenylate/guanylate cyclase [Bacillus sp. SG-1]
 gi|148850159|gb|EDL64326.1| adenylate/guanylate cyclase [Bacillus sp. SG-1]
          Length = 642

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 105/238 (44%), Gaps = 17/238 (7%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI---L 90
             S+ +A  IF     +       F  +E +  E   L ++++T+   +   + S+    
Sbjct: 396 LSSLGLAVFIFSQAYIIAKRSTKAFNEMERMTTE---LALLNLTLEEKVKERTVSLENSR 452

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIN 143
            +L     ++  LS  D L+ + N   F        +        +++++ DIDYFK  N
Sbjct: 453 DQLQKVNEKLKNLSYRDQLTQIPNRRYFDEKYHEAWDAALMNKSPIAVMYLDIDYFKLYN 512

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+ +  ++  +  +  +   FV R+GGEEF A  L  S +    LA   R +
Sbjct: 513 DTYGHEAGDECLKLVAQSIEEIIQSCDGFVARMGGEEFIAVLLNQSPESIYQLAEKCRTM 572

Query: 203 IENSQINISSGP-SIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
           IE   I   +   S  +T+S G A          + +I  AD+ LY AK++GRN +  
Sbjct: 573 IEGLNIPHENSKVSNRVTLSIGAAMSVANAKGKAADLISEADECLYEAKENGRNSIYI 630


>gi|108763771|ref|YP_633352.1| FHA/GGDEF domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108467651|gb|ABF92836.1| FHA/GGDEF domain protein [Myxococcus xanthus DK 1622]
          Length = 307

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 92/178 (51%), Gaps = 11/178 (6%)

Query: 88  SILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
           SI   L   Y R I + +  D L+ + N   F+ ++         +   LS+V FD+D+F
Sbjct: 123 SIQDALEEQYQRSIYESATRDGLTRVYNKKYFLETVRKEFSYCLRHRVPLSLVLFDVDHF 182

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND +GHP GD V+  ++ ++     T   + R GGEEFA     S+E +A   A   
Sbjct: 183 KKINDAYGHPAGDYVLTRIAQRVSDTVRTEDLLARYGGEEFALMLRESAEDQALACAERC 242

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
           R  ++ +   + SG  I +TIS G+A     +      +I  AD+ LY AK++GRNRV
Sbjct: 243 RYAVDKADF-VFSGTPIKVTISLGVATLLDSDFSQPEDLIAAADKYLYRAKRAGRNRV 299


>gi|16763765|ref|NP_459380.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167992228|ref|ZP_02573326.1| AdrA protein [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|197262292|ref|ZP_03162366.1| AdrA protein [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|7242806|emb|CAB77394.1| AdrA protein [Salmonella typhimurium]
 gi|16418888|gb|AAL19339.1| putative diguanylate cyclase/phosphodiesterase domain 1 [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|197240547|gb|EDY23167.1| AdrA protein [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|205329537|gb|EDZ16301.1| AdrA protein [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261245668|emb|CBG23464.1| adrA protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267992090|gb|ACY86975.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301156997|emb|CBW16480.1| adrA protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312911416|dbj|BAJ35390.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321225108|gb|EFX50169.1| Protein YaiC [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323128700|gb|ADX16130.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332987333|gb|AEF06316.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 370

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 104/232 (44%), Gaps = 12/232 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            F++ +  ++    + L   GL P       L   LSL +I +   LL  ++S     +L
Sbjct: 141 LFTVGMGLLLASCLVTLQLAGL-PVAMRSSSLEVTLSLPVIML-YPLLFAWVSYQTAIKL 198

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
                R+  +S  D ++G+ N   +             ++ + +++  DID+FK IND +
Sbjct: 199 AEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFDHSRRHHREATLLIIDIDHFKSINDTW 258

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ I  L+ QL +       +GR GG+EFA    G+    A    + + + +   
Sbjct: 259 GHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEFAVIMCGTPADSAITAMSRVHERLNTL 318

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++     P + + IS G+A    +       +  AD ALY AK +GRNR   
Sbjct: 319 RLP--GAPQVMLRISVGVAPLTPQIGHYREWLKSADMALYKAKNAGRNRTEV 368


>gi|109899867|ref|YP_663122.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109702148|gb|ABG42068.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
          Length = 561

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 58/195 (29%), Positives = 95/195 (48%), Gaps = 15/195 (7%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLS 130
           I+  + Y + +I ++       + +LS +D L+G+ N  A    L             LS
Sbjct: 368 IADTIDYFATTIEQQKLA----LQELSLLDGLTGIPNRRALDERLERELRLANREKWSLS 423

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSE 189
           ++  D+DYFK  NDN+GH  GD  +  ++  L      +  F  R GGEEF      + +
Sbjct: 424 LLMIDVDYFKLYNDNYGHAAGDTALVAIAQLLERFAQRSGDFAARYGGEEFVFILPNTDK 483

Query: 190 QEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPIST--IIYRADQALYV 246
             A  +A  L + + ++ +     P   H+TIS G++    ++P     +   AD ALY 
Sbjct: 484 DGAIRVATALLEAVRDANLEHKYSPKEEHLTISIGVSTCQPQDPKDADYVQRLADHALYS 543

Query: 247 AKKSGRNRVVCFSDI 261
           AK+SGR+R+V +SDI
Sbjct: 544 AKQSGRDRMVHYSDI 558


>gi|331015060|gb|EGH95116.1| GGDEF domain protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 424

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 119/285 (41%), Gaps = 36/285 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL------FYIG 54
           + +S    L +WL  +    +    ++M    + +++F+ +   +   +L          
Sbjct: 133 LEQSYPVELQVWLA-DIRWPALHG-SWMSLIQLSYAMFLLSFAVLIWQYLEKPRPLHAAQ 190

Query: 55  LTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           +    GL + L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL 
Sbjct: 191 IVGLLGLFWALPKTFILPFTLNILCSQVMLMIAAAVAHEAY-------QMAFRDELTGLP 243

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A    +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        
Sbjct: 244 GRRALNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGRAY 303

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-------------------P 214
           R GGEEFA      +  E       +R+ I N  I + +                     
Sbjct: 304 RYGGEEFAIVFAAKTIDECMPHLEAIRETIANYAIQLRNKDSRPQDDQQGRQRRSGAHEA 363

Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S+ +T+S G+AER         ++  ADQALY AK +GRN VV +
Sbjct: 364 SVSVTVSIGVAERQPEHRTPEEVLKSADQALYAAKGAGRNCVVAY 408


>gi|303249050|ref|ZP_07335294.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio fructosovorans JJ]
 gi|302489573|gb|EFL49514.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio fructosovorans JJ]
          Length = 809

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 87/182 (47%), Gaps = 12/182 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYF 139
           + + +     ++++ ++  D L+GL N S  +  +    E+         +++F D+D F
Sbjct: 357 TDITDRKRLESQLAHMAFHDPLTGLPNRSLCLDRIRQAIERSKRRDNYQYAVIFLDLDRF 416

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND+ GH +GD+++  +S +L         V RLGG+EF      + S +E   +   
Sbjct: 417 KVINDSLGHHMGDRLLEGVSKRLRECVRGLDTVSRLGGDEFVVLLEETGSYREIVRIVKR 476

Query: 199 LRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +R  +   ++       IH+T S GI    C  +    ++  A+ AL+ AK  GRNR   
Sbjct: 477 IRSAV--GEVFQFCDHDIHVTCSMGIVISPCLYDKPEELLRNANIALHRAKGEGRNRFKV 534

Query: 258 FS 259
           F+
Sbjct: 535 FN 536


>gi|254784772|ref|YP_003072200.1| signal transduction protein, with PAS, HAMP, GGDEF and EAL domainsl
           [Teredinibacter turnerae T7901]
 gi|237686658|gb|ACR13922.1| Predicted signal transduction protein, with PAS, HAMP, GGDEF and
           EAL domainsl [Teredinibacter turnerae T7901]
          Length = 807

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 19/184 (10%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            + EL  +   + +L+  D L+ L N   F       I++   Y+++L+++  D+D FK+
Sbjct: 357 DVTELKTAQMELEKLAFYDPLTDLPNRRFFRGHLELTIAAAKKYDKRLAVMMTDLDDFKK 416

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-----EQEAAILA 196
           IND FGH  GD+++  +  +L     +   V R+GG+EF             + +A  + 
Sbjct: 417 INDTFGHDAGDQLLMQIGKRLKAASASIDVVSRMGGDEFMLLVKNIDSSSQLDHKANNIL 476

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             LR+ +E       +G  + +  S GIA   +       +I  AD ALY AK  G N V
Sbjct: 477 RALREKME------INGQQVEVGGSIGIAVFPNDAITYEELIRYADIALYNAKSMGGNTV 530

Query: 256 VCFS 259
             +S
Sbjct: 531 SYYS 534


>gi|229523544|ref|ZP_04412949.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|229337125|gb|EEO02142.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
          Length = 731

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 113/228 (49%), Gaps = 22/228 (9%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI------------- 95
           F +   + P +     ++    ++ +++ +SL++  I     +EL++             
Sbjct: 494 FSYVFIIEPHWWQRKEVIVMAGMLFLALAVSLVMWRIRILKRRELYLVEQVALKTQKLRL 553

Query: 96  SYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
              +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIND + H
Sbjct: 554 QAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIALLDIDHFKQINDRYSH 613

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+ I  +S +L+   G    V R GGEEF    +G   Q+A      LR  IE   +
Sbjct: 614 IIGDQAIVAVSQELLGYVGDNTRVARWGGEEFTILYVG-DPQQAWGYFEKLRCKIEQVDL 672

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  +   +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 673 SAVA-TGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 719


>gi|237808824|ref|YP_002893264.1| diguanylate cyclase with PAS/PAC sensor [Tolumonas auensis DSM
           9187]
 gi|237501085|gb|ACQ93678.1| diguanylate cyclase with PAS/PAC sensor [Tolumonas auensis DSM
           9187]
          Length = 658

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 12/180 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            +     +  RI  L+  D L+ L N    +            Y  +++I + D+D FK 
Sbjct: 473 DISARREAEARIQYLAHHDYLTNLPNRLLLVEHATQALTLARRYKRRMAIFYIDLDRFKP 532

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           IND +GH VGD ++  ++ +L+ +      V R GG+EF              ILA  LR
Sbjct: 533 INDQYGHNVGDVILKTVAQRLLSIVRESDTVCRQGGDEFVILLPEFMDTDSLEILAIKLR 592

Query: 201 KIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I+  + ++++G  + I+ S GIA      + +  II  AD A+Y AK   + + +CF+
Sbjct: 593 DEIQ--KPSMANGYQLTISASIGIATYPDNGDTVDAIIQSADTAMYSAKAD-KEKHICFA 649


>gi|56476007|ref|YP_157596.1| hypothetical protein ebA1086 [Aromatoleum aromaticum EbN1]
 gi|56312050|emb|CAI06695.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 581

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 98/203 (48%), Gaps = 12/203 (5%)

Query: 65  LVENLSLVIISITISLLLG--YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +V ++S V+ S      +G  +I   + +E  I+  ++ +L+  D L+ L N   F   L
Sbjct: 357 IVTDVSTVVESAEGQRWIGRVWIYEDVTEERKIA-RKMVELAERDPLTNLFNRRRFHEEL 415

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                    +  ++ ++  D+D FK IND FGH  GD V+  LS  +  V        RL
Sbjct: 416 NRLLAEATRHQVRVGLIAIDLDGFKPINDEFGHQAGDAVLVGLSRAVAGVIRRNEMFFRL 475

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPIS 234
           GG+EF      + E++   LA  + ++IE  +     G S+++T S GIA    H +   
Sbjct: 476 GGDEFGVLVPDAEERDLCELARRILEVIETQRFEF-EGRSMNLTASLGIALFPQHADNPE 534

Query: 235 TIIYRADQALYVAKKSGRNRVVC 257
            +I  ADQA+Y +K  GRNR   
Sbjct: 535 QLIAIADQAMYCSKNRGRNRWTL 557


>gi|258627565|ref|ZP_05722342.1| GGDEF family protein [Vibrio mimicus VM603]
 gi|258580147|gb|EEW05119.1| GGDEF family protein [Vibrio mimicus VM603]
          Length = 978

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 109/228 (47%), Gaps = 22/228 (9%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE-------------LFI 95
           + +   + P +     ++  L ++++++ IS+++  I     +E             L  
Sbjct: 741 YSYSFTIAPHFWQRKEVIFMLGMLVVALCISVVMWRIRTLKRREWYLVEQVALQTQKLRF 800

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
              +  +LS+ D L+GL N  AF   L           +++SI   DID+FKQIND + H
Sbjct: 801 QAEKFERLSKEDELTGLANRRAFDVYLKQAFSRVDHPGQQVSIGLLDIDHFKQINDRYSH 860

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+ I  +S QL+        V R GGEEF    +G   +EA     +LR  IE    
Sbjct: 861 IIGDQAIVAVSQQLLKYVRDKTRVARWGGEEFTILYVG-DPKEAWSYFEELRCTIEQVDF 919

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  + P + +T+S G A+    E   +++  AD AL  AKK GRNRVV
Sbjct: 920 STVA-PGLTVTVSVGFADSQQAESYESVLKLADHALLTAKKLGRNRVV 966


>gi|86138374|ref|ZP_01056948.1| Putative diguanylate cyclase (GGDEF domain) [Roseobacter sp.
           MED193]
 gi|85824899|gb|EAQ45100.1| Putative diguanylate cyclase (GGDEF domain) [Roseobacter sp.
           MED193]
          Length = 300

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 77/236 (32%), Positives = 119/236 (50%), Gaps = 12/236 (5%)

Query: 26  TFMIYFSIF-FSI-FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           ++++   IF F++ ++  +IFI  ++L    L    GLEY  ++ L  V +  T  L +G
Sbjct: 63  SYLVPRGIFQFALHYLLWMIFIICLYLLQKFLFD-GGLEYGYLQPLRTVFVIATPCLFIG 121

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQ 141
               S+  +L      IS+L+R D L+GLLN  A  + L S   N   S++  DID+FK 
Sbjct: 122 L---SLAVKLEAQREEISRLARTDVLTGLLNRGAMDAVLASAISNRAGSLLLMDIDHFKS 178

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND+FGH  GD+ +  ++  L  V    + + R GGEEF A        E A  AN L  
Sbjct: 179 VNDDFGHAAGDECLRAVAKFLRQVLPEEVELARWGGEEFVALVRRQQVSEVAPFANRL-- 236

Query: 202 IIENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            ++   + I+     I IT S G+A      P+  ++  AD  LY+AK  GR + V
Sbjct: 237 -VKGFSLPITGRNQPIRITFSIGVANLSEVGPVDALLKLADTRLYLAKSWGRAQWV 291


>gi|167571938|ref|ZP_02364812.1| hypothetical protein BoklC_19009 [Burkholderia oklahomensis C6786]
          Length = 444

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 63/256 (24%), Positives = 117/256 (45%), Gaps = 28/256 (10%)

Query: 24  PHTFMIYF----SIFFSIFIATVIFIANIFLFYIGLTPF------------YGLEYILVE 67
           P   +++     ++   + I  +  + +++L  + L  F            +   + +  
Sbjct: 174 PAAIVVWAINLGAVAAVLLIGRMRTVLDVWLIVVVLACFTDASLNLLSTGRFSAGWYIAR 233

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---- 123
             S++   I +  L+  ++  + + LF ++  + + +  D L+ + N S F         
Sbjct: 234 LFSMLTPGILVCALVWEVT-MLYRRLFDAHASLVRTAAHDALTMVYNRSYFNEQFEKAFR 292

Query: 124 ---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEE 179
               +N+ +++V  D+D+FK  ND FGH  GD  +  ++  L  V      FV R GGEE
Sbjct: 293 HAHRHNQPIALVMVDVDHFKHYNDAFGHLQGDTCLVAVAAALSGVANRPHDFVARYGGEE 352

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTII 237
           FA    G+ E+ AA +A  +R+ +E  +I  +  P  ++T+SAG A       E    ++
Sbjct: 353 FAVVLPGTDERGAATIAEQVRQSVERLRI-AADMPPGYVTVSAGYATSSGNPFETPEALV 411

Query: 238 YRADQALYVAKKSGRN 253
             +D ALY AK  GRN
Sbjct: 412 AASDAALYRAKMLGRN 427


>gi|187477686|ref|YP_785710.1| signaling protein [Bordetella avium 197N]
 gi|115422272|emb|CAJ48796.1| putative signaling protein [Bordetella avium 197N]
          Length = 513

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 56/160 (35%), Positives = 84/160 (52%), Gaps = 8/160 (5%)

Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+GL N   +   I++  SY+  ++I+  DID+FK++ND +GH VGD+V+  LS+ + 
Sbjct: 358 DALTGLANRRVYEICINTWESYHRSVAIIAIDIDHFKKVNDTYGHAVGDEVLKKLSEIMS 417

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   V R+GGEEF   A   S   A  +A  +R  +     N       +ITIS G
Sbjct: 418 SCARAADVVCRIGGEEFLILAPAMSRDSAKEMAERIRVQVSEYDFNTVG----NITISLG 473

Query: 224 IAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +A   +    +S +   AD  LY AK +GRNRV    ++E
Sbjct: 474 VAVWPYDCSKLSQLSKMADDMLYQAKANGRNRVETADELE 513


>gi|74318832|ref|YP_316572.1| PAS/PAC sensor-containing diguanylate cyclase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74058327|gb|AAZ98767.1| Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           domain [Thiobacillus denitrificans ATCC 25259]
          Length = 321

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 90/185 (48%), Gaps = 20/185 (10%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL   +  +  L+  D L+GL N  AF    G         +EK S++  D+D+FKQIND
Sbjct: 131 ELLRLHAELELLANHDGLTGLYNWRAFYEHAGQLLTTAHRRHEKASLLILDLDHFKQIND 190

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD+V+   +  L         V R GGEEF  A  G SE E+ + A  LR  + 
Sbjct: 191 RFGHAEGDRVLQAAAAALKASARQNDIVARHGGEEFVIAGFGLSEAESLVAAERLRAAVA 250

Query: 205 NSQINISSGPSIHITISAGIAERCHKEP--------ISTIIYRADQALYVAKKSGRNRVV 256
           + +       +  +T S G+A               ++ ++ RADQALY AK+SGRNR+ 
Sbjct: 251 SIE-----NLACRVTTSVGVATFVPDPSSRHEPPTLLADLLDRADQALYHAKRSGRNRIC 305

Query: 257 CFSDI 261
            F  +
Sbjct: 306 HFDQL 310


>gi|16759363|ref|NP_454980.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29142865|ref|NP_806207.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213161857|ref|ZP_03347567.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213427798|ref|ZP_03360548.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213852998|ref|ZP_03382530.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|25513094|pir||AH0549 adrA protein [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16501654|emb|CAD08840.1| adrA protein [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29138497|gb|AAO70067.1| adrA protein [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 370

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 103/232 (44%), Gaps = 12/232 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            F++ +  ++    + L   GL P       L   LSL +I +   LL  ++S     +L
Sbjct: 141 LFTVGMGLLLASCLVTLQLTGL-PVAMRSSSLEVTLSLPVIML-YPLLFAWVSYQTAIKL 198

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
                R+  +S  D ++G+ N   +             ++ + +++  DID+FK IND +
Sbjct: 199 AEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFDHSRRHHREATLLIIDIDHFKSINDTW 258

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+ I  L+ QL +       +GR GG+EFA    G+    A    + + + +   
Sbjct: 259 GHDAGDEAIIALTRQLQITLRGSDIIGRFGGDEFAVIMCGTPADSAITAMSRVHERLNTL 318

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++     P + + IS G+A    +       +  AD ALY AK +GRNR   
Sbjct: 319 RLP--GAPQVMLRISVGVAPLTPQIGHYREWLKSADMALYKAKNAGRNRTEV 368


>gi|330980266|gb|EGH78407.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 308

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 8/170 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y   +Q +  D L+   N  A   SL         + + LS++  DID+FK++ND +GH 
Sbjct: 140 YRIATQTALRDPLTSTGNRIAMDQSLAREIEISRRHKQPLSLLMLDIDHFKKVNDEYGHH 199

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  L         V R GGEEF      +    A ++   L + + N +  
Sbjct: 200 TGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGADSAELIGQRLCQAVRNLEFR 259

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               P++ +T+S G +     EP  +++ RAD ALYVAK+ GRNR+   S
Sbjct: 260 -ELSPALTMTVSLGCSTLLPTEPADSLLRRADNALYVAKREGRNRIAMAS 308


>gi|330896018|gb|EGH28241.1| GGDEF domain-containing protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330936872|gb|EGH41013.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str.
           1704B]
 gi|330975437|gb|EGH75503.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 334

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+GL N   F   L            +LS++  D+DYFK  N
Sbjct: 156 QQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRAIREQSQLSMLMIDVDYFKPYN 215

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DNFGH  GD+ +  ++  +            R GGEEFA     +S   A +LA  LR+ 
Sbjct: 216 DNFGHLEGDEALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQS 275

Query: 203 IENSQI-NISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
           +    I +I+  P   +T+S G+A            +I  AD+ LY AK +GRN+V  
Sbjct: 276 VAGMNIPHIAPVPGSSLTVSIGVATMTPQVGMQSRQLILDADKGLYQAKNNGRNQVAA 333


>gi|330504393|ref|YP_004381262.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328918679|gb|AEB59510.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 344

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 104/249 (41%), Gaps = 14/249 (5%)

Query: 27  FMIYFSIFFSIFIATV--IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           F IY  I F+ F+ +     +A   +    ++    +   + E+   ++  +  S++   
Sbjct: 99  FWIYPLILFNFFMVSPGKALLATALVLVSLVSHALLVPGSVFESHYQMVSFLVTSMMASV 158

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           +S           +++  L+  D L+G  N  A    L         +++   ++  D+D
Sbjct: 159 LSFIFAFRTRTQRDQLQLLAIHDPLTGARNRRAMNEELKIAMASHRRHSDSYGLLVMDLD 218

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FKQIND FGH +GD+V+    + +         + R GGEEF      +  +     A 
Sbjct: 219 HFKQINDRFGHHIGDQVLVAFVELIKRYCRKEDRLFRFGGEEFLLLLPSTEAEGLRAAAQ 278

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +L   + N        P   +T+S G A     E   + + RAD+ LY AK  GRNR V 
Sbjct: 279 NLLGKVANE----LQSPGGAVTVSIGGAILHGGEHWESWLQRADECLYRAKSEGRNRAVI 334

Query: 258 FSDIENNTC 266
            +D    T 
Sbjct: 335 -ADAPETTA 342


>gi|295402578|ref|ZP_06812526.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975377|gb|EFG51007.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 953

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 11/190 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDI 136
           Y  G  + E   +  +IS L+  D  + L N + F+             N KL++VF D+
Sbjct: 506 YGIGRDITEQKKAEEKISYLAYYDPDTHLPNRTKFMEIITEQLEKAKRKNRKLAVVFIDL 565

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FK+IND+ GH  GD+++  +  +++ V      +GR  G++F     G    ++    
Sbjct: 566 DRFKRINDSIGHYAGDEILKQVVQRILHVLPIEAHLGRFHGDKFCLLLTGQIHSEKVFET 625

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A  + K  E ++  +  G    IT S GI+          +++  AD A+  AK+SG NR
Sbjct: 626 ATRIAK--EVTKPIVYDGKEFFITASIGISFYPSDGVDAHSLLKNADIAVSRAKRSGGNR 683

Query: 255 VVCFSDIENN 264
           V  +S   N+
Sbjct: 684 VQFYSAKMND 693


>gi|255747077|ref|ZP_05421022.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262161378|ref|ZP_06030488.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|262167752|ref|ZP_06035454.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|255735479|gb|EET90879.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262023817|gb|EEY42516.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|262028689|gb|EEY47343.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
          Length = 473

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 14/215 (6%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           F +YI +       + +    +L  ++I+  + LG +  + +        R+  ++  D 
Sbjct: 264 FQWYIIVEQKDEFNHDIWFKATLGNLAISAFVALGVLGLAQMS-FRGYQKRLEDMAVRDK 322

Query: 109 LSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+G  N   F              +  LS+   D+D+FKQ+NDN+GHP GD V+  +   
Sbjct: 323 LTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPAGDLVLQRVVAL 382

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                     + R GGEEF       ++QEA      +R  I              +T+S
Sbjct: 383 CQRHIAQVGTLCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMHA------SQPQVTVS 436

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ +    E +  +  RADQA+Y AK  GRN+VV
Sbjct: 437 IGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 471


>gi|152982239|ref|YP_001353357.1| hypothetical protein mma_1667 [Janthinobacterium sp. Marseille]
 gi|151282316|gb|ABR90726.1| Hypothetical protein mma_1667 [Janthinobacterium sp. Marseille]
          Length = 283

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 9/170 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           ++    +  D L+GL N + F       ++        LSI++ D+D FK +ND  GH  
Sbjct: 113 HQAQHQANHDVLTGLANRALFHEIVSQQLALCERNKTVLSILYIDLDGFKAVNDKHGHEA 172

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDK++  ++ +L         V RLGG+EFA   +G+  + A  +A  + + I ++   +
Sbjct: 173 GDKLLRAVASRLKTNSRHSDVVARLGGDEFAMVMVGAHMENARFVAEKMVEAI-SAPYVL 231

Query: 211 SSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               + HI+ S G+A           +++RAD A+Y AK  GR RV   +
Sbjct: 232 DDTLTSHISASIGVATYPESGTTSEALLHRADGAMYKAKNLGRRRVALAT 281


>gi|146278372|ref|YP_001168531.1| response regulator receiver modulated diguanylate cyclase
           [Rhodobacter sphaeroides ATCC 17025]
 gi|145556613|gb|ABP71226.1| response regulator receiver modulated diguanylate cyclase
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 461

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 13/169 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+ +D L+GL N     + L +         E+ +++  D+D FK +ND +GH  GD V
Sbjct: 287 RLAVVDPLTGLYNRRYAGAHLAAVAERAQAAGERFAVMVIDLDRFKSVNDRWGHGAGDAV 346

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSG 213
           +  ++ +L         + R+GGEEF  A        EA  +A  LR+ IE   +++  G
Sbjct: 347 LVEVARRLHANLRPGDLIARIGGEEFLVALPDVRRPDEARAVAERLREAIEEQPVSLPCG 406

Query: 214 PSIHITISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNRVVC 257
            S+ +TIS G+A          E +  ++ RAD AL +AK  GRN+V  
Sbjct: 407 GSLRVTISVGLAFSLDDGGRRVETVDQVVNRADSALLIAKSGGRNQVTI 455


>gi|91792128|ref|YP_561779.1| ammonium transporter [Shewanella denitrificans OS217]
 gi|91714130|gb|ABE54056.1| ammonium transporter [Shewanella denitrificans OS217]
          Length = 644

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 93/190 (48%), Gaps = 15/190 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           ++  I+ +R+S+L++ D L+ L N   F          +    +  S++  DID+FK  N
Sbjct: 453 RQADINSHRLSRLAKTDHLTRLNNRLGFDECYDSEWLRMRREKKPFSLLLIDIDHFKLYN 512

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D++GHP GD+ +  ++  L            R+GGEEFA     +  +    +AND+   
Sbjct: 513 DHYGHPRGDQCLQQVALVLASTAKRPADCCARVGGEEFAILLPDTDSEAGEKIANDINIR 572

Query: 203 IENSQINISSGPSI-HITISAGIAERCHK--EPIST--IIYRADQALYVAKKSGRNRV-- 255
           ++  +I   S P + ++T+S GIA    +  + +    +   AD ALY AK++GRN V  
Sbjct: 573 LKALEIPHLSSPIMPYVTVSIGIATLTPERYDSLDQAYLYQCADDALYSAKQAGRNGVKA 632

Query: 256 VCFSDIENNT 265
           V   +    T
Sbjct: 633 VIIDEAHEQT 642


>gi|115524075|ref|YP_780986.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
 gi|115518022|gb|ABJ06006.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
          Length = 507

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 9/179 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           S   ++ L    + + + +  D L+G+ N   F       I     ++  LS+V  DID 
Sbjct: 161 SAEQIRVLQNRLDLVQRETLSDPLTGVANRRMFDASIGRLIEQADQHDSPLSLVLIDIDN 220

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK  ND FGH VGD ++  ++ ++         + R GG+EFA     +  + A  +A  
Sbjct: 221 FKHFNDKFGHLVGDGILRLVATEITQSCRANDVICRNGGDEFAVILPETPIEGALAVAEA 280

Query: 199 LRKIIENSQINISSGPS--IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +R+ +   Q+   S       IT S G+A+         ++ RAD+ LY AK  GRNRV
Sbjct: 281 IRERVMKRQLLRRSTKEPMGRITTSIGVAQHQKGNSPEALVARADKWLYSAKTLGRNRV 339


>gi|332528694|ref|ZP_08404671.1| diguanylate cyclase/phosphodiesterase [Hylemonella gracilis ATCC
           19624]
 gi|332041760|gb|EGI78109.1| diguanylate cyclase/phosphodiesterase [Hylemonella gracilis ATCC
           19624]
          Length = 907

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 81/190 (42%), Gaps = 12/190 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           +   +         I +L+  D L+GL N       L           +  +IV  D+D 
Sbjct: 449 TRMDISARKQHETEIERLAFYDSLTGLPNRRLLHERLDRGLVASEERGQIGAIVLIDLDN 508

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILA 196
           FK +ND  GH +GD+++  +S +L  +      V RLGG+EF      LG S  EA   A
Sbjct: 509 FKSLNDTLGHDLGDQLLVSVSARLRQIVRAQDTVARLGGDEFVLLLESLGGSWAEARRNA 568

Query: 197 NDL-RKIIEN-SQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253
             L R +++  S     +   I+ T S GI         +  ++ +AD A+Y AK  GRN
Sbjct: 569 ETLGRNLLQRLSHPYHLADRQIYSTPSLGITLFAGGSSKLDDLLRQADMAMYEAKAQGRN 628

Query: 254 RVVCFSDIEN 263
            +  F     
Sbjct: 629 TLSFFEPEMQ 638


>gi|313681484|ref|YP_004059222.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM
           16994]
 gi|313154344|gb|ADR33022.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM
           16994]
          Length = 458

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL+   N + Q +  D L+G+ N   F       I++    N  LS+V FD+D FK +ND
Sbjct: 286 ELYSMTNTLEQKAYKDKLTGINNRENFEDIFALEIATAKQNNIPLSLVIFDVDNFKLVND 345

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD ++  L   +           R GGEEF      +    A  LA +LRK+++
Sbjct: 346 TYGHQAGDTILIDLVKLIEDNIKNGDIFARWGGEEFVILTPSTDINGACNLAENLRKLVQ 405

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               +        +T+S G+A+    +   T+  +AD ALY AKK+GRNRV
Sbjct: 406 LHPFSYVENQ---MTLSFGVAQLSDDDNKKTLFEKADGALYEAKKNGRNRV 453


>gi|295703601|ref|YP_003596676.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium DSM 319]
 gi|294801260|gb|ADF38326.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Bacillus
           megaterium DSM 319]
          Length = 922

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 50/217 (23%), Positives = 92/217 (42%), Gaps = 11/217 (5%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L  F  L   L   +   +I I    L   ++   + E   +   +  ++  D L+ L N
Sbjct: 442 LKMFNALGKELFLEVKSTLIQINGETLFQTVT-RDVTEQKKAQESLQYMAFHDMLTDLPN 500

Query: 115 HSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
            S F       I S  +  +KL  +F D+D FKQ+ND  GH  GD+++  + D++     
Sbjct: 501 RSMFSSIVEKSIDSAAASGKKLHFLFLDLDRFKQVNDTLGHHAGDQLMLQVVDRMKSCIR 560

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
               + R GG+EF       +++E   +   L   +  S   +     +++ +S G++  
Sbjct: 561 NQDVLSRFGGDEFLVLLHDRTDEEVKKICQSLNDCL--STPFVVLSRDVYLGVSIGVSLF 618

Query: 228 C-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
               + +  ++  AD A+Y  KK GRN  + +     
Sbjct: 619 PKDGKTLEVLVRHADLAMYEVKKQGRNHYLFYQKEMQ 655


>gi|119470386|ref|ZP_01613114.1| putative GGDEF domain protein [Alteromonadales bacterium TW-7]
 gi|119446311|gb|EAW27587.1| putative GGDEF domain protein [Alteromonadales bacterium TW-7]
          Length = 854

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 12/186 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQ 141
           ++E      ++   +  D L+ L N S F++ L             + +++F D+D FK 
Sbjct: 424 IEERKKIEQQLYHDAHHDSLTSLPNRSLFLTQLEKTLQHFQRFPERQFAVLFIDLDKFKD 483

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLR 200
           IND  GH  GD+ +  +S+           + RLGG+EF       +E Q+A  +AN + 
Sbjct: 484 INDQLGHQAGDQFLINVSELFSQCIREHDLLARLGGDEFVILLTHLTEPQQAEDVANRII 543

Query: 201 KIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +++    NI  G  +    S GI   +   +    II  AD A+Y AK SG+NR   F 
Sbjct: 544 DLMKK-PFNIK-GTLLQSGASIGINYSKQSYKHTDEIIRDADAAMYHAKNSGKNRYELFH 601

Query: 260 DIENNT 265
            +   +
Sbjct: 602 PLLTQS 607


>gi|71277969|ref|YP_270582.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71143709|gb|AAZ24182.1| sensory box sensor/GGDEF/EAL domain protein [Colwellia
           psychrerythraea 34H]
          Length = 1086

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S + E       I + ++ D L+ L N   FI  L          N+K +++F D+D FK
Sbjct: 631 SDITEKKKKDALILRQAKYDSLTNLPNRIMFIDRLEQEIKVSHRKNQKFALIFIDLDNFK 690

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
           +IND  GH  GD ++     ++         V RLGG+EF               +   +
Sbjct: 691 KINDTRGHVYGDALLIEAGKRITHCIREVDTVARLGGDEFTILLSDIADIHNVESICQKV 750

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCF 258
            + +  S+    S    +I+ S G+    +    +  ++  ADQA+Y+AK  GRNR   F
Sbjct: 751 LQTL--SEPFFISKMYTYISASLGVTIYPNDASSTLELLKNADQAMYLAKNLGRNRFCYF 808

Query: 259 SDIENNTC 266
           +       
Sbjct: 809 TASMQEEA 816


>gi|84387873|ref|ZP_00990887.1| hypothetical protein V12B01_15306 [Vibrio splendidus 12B01]
 gi|84377219|gb|EAP94088.1| hypothetical protein V12B01_15306 [Vibrio splendidus 12B01]
          Length = 487

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 67/208 (32%), Positives = 105/208 (50%), Gaps = 16/208 (7%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQL--SRIDCLSGLLNHSAF 118
           LE  L  N SL+ IS+ ++L++  +S  I+  L++ +  +  L  + +D L+GL +  +F
Sbjct: 276 LEQELNRNHSLLFISL-MALVVSLLSIIIVLVLYLRHRHLKILDVASLDYLTGLPSRRSF 334

Query: 119 ISSL-----GSYNEKLS---IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           I  L           L+   ++  DID+FK++ND +GH  GD+VI  ++  L        
Sbjct: 335 IEQLKLKIAQRSPYPLTNVGVILLDIDHFKRVNDQYGHAQGDRVICEVAKSLKRFVNRRR 394

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            + R GGEEF        E+E   L+ +LR+ +E  Q     G    +TISAG       
Sbjct: 395 LIARYGGEEFILVTFDCDERELFELSEELRRSVEQLQ-----GLVSPVTISAGCCHDRAL 449

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCF 258
             I T I +AD+ALY AK+ GRN    +
Sbjct: 450 TDIETAIDKADKALYQAKERGRNNTQTY 477


>gi|303247522|ref|ZP_07333793.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
 gi|302491002|gb|EFL50896.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ]
          Length = 414

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 105/246 (42%), Gaps = 14/246 (5%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           MI FS+        +       L +      +    IL+  LS+V I  ++ +L      
Sbjct: 160 MIAFSLVSMALRLGIAASMGSSLTFFRNGGAWQSAAILLTILSMVGIMASLIILNA---Q 216

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
            +  EL  +  +I  L+  D L+ L N   F          L    + LS++  DID FK
Sbjct: 217 RLELELKEANRKIEILANQDGLTSLFNRRYFDKKLVQEFKRLQRSAQPLSLIMADIDCFK 276

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GH  GD  I  ++D      G       R GGEEF      +  + A  +A ++
Sbjct: 277 NFNDTYGHQAGDDCIRAIADAFKQSGGRVSDIAARYGGEEFVMLLPNTDTRGANTVAREI 336

Query: 200 RKIIENSQINISSGPSIHI-TISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVV 256
            + +    I  ++  +  I T+S G+A       +   T++  ADQALY +K +GRN++ 
Sbjct: 337 SERVTAKAIAHATSVAAPIVTLSMGVATIMPARSMRPKTLVEMADQALYASKSNGRNQIR 396

Query: 257 CFSDIE 262
            ++  +
Sbjct: 397 NYAPEQ 402


>gi|296386776|ref|ZP_06876275.1| putative sensory box/GGDEF domain/EAL domain protein [Pseudomonas
           aeruginosa PAb1]
          Length = 760

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 10/180 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFK 140
           S L  +  S N +  L+  D L+GL N       +    E         +++  D+D+FK
Sbjct: 315 SDLSSIKRSENELDFLAHHDSLTGLPNRVLLRERIEQALENGKDRTVAGALLLIDLDHFK 374

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND+ GH  GD ++  +S +L         + RLGG+EFA        +  A L+  + 
Sbjct: 375 HINDSLGHTTGDMLLKEVSKRLQHQLDERCLLSRLGGDEFAILVENDDPEAVARLSQRIL 434

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
               N+  +I   P I+I+ S G++        +  ++  AD AL+ AK SGRN    ++
Sbjct: 435 DGF-NAPFDIHCQP-IYISASLGVSLYPEDASDVDHLMQHADAALFQAKDSGRNAYAFYT 492


>gi|294664742|ref|ZP_06730071.1| GGDEF family protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292605496|gb|EFF48818.1| GGDEF family protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 930

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 103/229 (44%), Gaps = 33/229 (14%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE---------------------L 93
           + P++   + +V  + L I ++    LL + +  +L+                      L
Sbjct: 694 VPPWWRGVWAIVGYVLLSIAAVIA--LLRWRTAKLLRRKRELEQLVAKRTAELEQDKRDL 751

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNF 146
             +   +S  +  D L+GLLN +  +++L             L++V  D+D+FK +ND  
Sbjct: 752 EAARAELSLKATHDELTGLLNRAGILAALREMLLHAEHNGRPLAVVLIDLDHFKLVNDQH 811

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD V+A +  ++  +      +GR GGEE  A   G +      L    R I  + 
Sbjct: 812 GHLAGDAVLAGVGRRMDTLMRGDDRIGRYGGEELLALLPGLNLDATHRLDALHRGICGDY 871

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I    G  +H+T S G+A     E +  ++ RAD ALY AK+SGRNRV
Sbjct: 872 PI---DGGWLHVTCSVGVAWFQRGETLEQLLARADAALYRAKRSGRNRV 917


>gi|260459338|ref|ZP_05807593.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Mesorhizobium opportunistum WSM2075]
 gi|259034892|gb|EEW36148.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Mesorhizobium opportunistum WSM2075]
          Length = 884

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 55/189 (29%), Positives = 83/189 (43%), Gaps = 11/189 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDID 137
           +S S   EL  +  RI  ++  D L+GL N       L  Y           +++  D+D
Sbjct: 437 LSESKNAELGAAKARIEHIALHDSLTGLPNRRYLDQMLEEYTANAKRDGCYAALLHIDLD 496

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILA 196
            FK IND  GH  GD ++   S  L        FV R+GG+EF     +    ++ A+LA
Sbjct: 497 RFKHINDTLGHAAGDAMLVHASAVLRSKVENGGFVARIGGDEFVVLCTVNDDIKQLALLA 556

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
           + +  I +  +     G      +S GIA    K+     ++  AD ALY AK  GRNR 
Sbjct: 557 DRI--ISQMGEPVYYRGHRCRFGVSVGIAVDNRKDAEAKHLLMNADIALYRAKSRGRNRH 614

Query: 256 VCFSDIENN 264
             F++   +
Sbjct: 615 EFFTEAMQS 623


>gi|239908176|ref|YP_002954917.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239798042|dbj|BAH77031.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 596

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 56/182 (30%), Positives = 82/182 (45%), Gaps = 10/182 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           +EL      + +LSR D L+GL N      +L         Y     +   DID+FKQIN
Sbjct: 413 EELENLNASLERLSRTDSLTGLPNRRRAEEALHEALVRFRRYGHGFVVAMADIDHFKQIN 472

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD  +   +  +         V R GGEEF      ++E  A  L   +   +
Sbjct: 473 DAIGHDAGDAALRHAARAMAGSLRETDLVARWGGEEFLLFMPDTAEAGARRLLARICDCL 532

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            +  ++ ++  S  +T + G A     E +  ++ RADQALY  K  GRNRV+   D E+
Sbjct: 533 ASDGLSCAA-LSAPLTATFGAAAIRPGESLDELLRRADQALYRGKAMGRNRVIW--DGED 589

Query: 264 NT 265
            T
Sbjct: 590 GT 591


>gi|254457458|ref|ZP_05070886.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207086250|gb|EDZ63534.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 802

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 87/209 (41%), Gaps = 12/209 (5%)

Query: 66  VENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           +  ++++ +     +L  YIS  + + +       I  L+  D L+ L N   F   +  
Sbjct: 339 IAEMNIIALHNDDGILTNYISITNDISKKKEQEKLIHNLAYFDSLTDLPNRVLFEERVVS 398

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                  +++K++++F D+D FK +ND  GH +GD  +  +S+ +         + RLGG
Sbjct: 399 RIPFSKRHDKKMALLFIDMDNFKNVNDTLGHFMGDMFLIEVSNIIKNSIREQDTLARLGG 458

Query: 178 EEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           +EF        S  +   +A  +     N    +     ++  IS GI+         + 
Sbjct: 459 DEFTVLLEDINSIMDIVPIAEKIIAAFNN--PVLIESKELYTGISMGISLYPDDGKSYNE 516

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +   AD A+Y  K SG+N    F    N 
Sbjct: 517 LFKAADTAMYQVKASGKNNFQFFKQSMNE 545


>gi|90414349|ref|ZP_01222327.1| putative signal transduction protein [Photobacterium profundum
           3TCK]
 gi|90324573|gb|EAS41125.1| putative signal transduction protein [Photobacterium profundum
           3TCK]
          Length = 725

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 57/210 (27%), Positives = 97/210 (46%), Gaps = 18/210 (8%)

Query: 73  IISITISLLLGYISGSILKE-------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
           + SITI+L   +    +L++       +    + + + +  D L+GL N       L   
Sbjct: 261 LTSITIALFGSWAMWFVLRQPEKLQKIVKQKTHELEKFAFYDYLTGLANRRLLNEHLEQV 320

Query: 126 NEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
            ++        +++ FD+D FK+IND+ GH +GD V+  +S +L  V      V RLGG+
Sbjct: 321 IQQTECCGNSAALLCFDLDDFKRINDSQGHDIGDCVLQQISHRLNSVVNKNDIVARLGGD 380

Query: 179 EFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTI 236
           EF      S S  +A  +A  L ++I  S+    +   + ++ S GI         +ST+
Sbjct: 381 EFTVLLSASYSASDAGRIAGQLIEVI--SEPIFLNNKELSVSASVGITMIPSDGNDVSTL 438

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           +  AD A+Y AKKSG+     F+       
Sbjct: 439 LRNADMAMYSAKKSGKRNYHFFNKALQKKA 468


>gi|56414460|ref|YP_151535.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|168237493|ref|ZP_02662551.1| AdrA protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194734843|ref|YP_002113415.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197363381|ref|YP_002143018.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|204927093|ref|ZP_03218295.1| AdrA protein [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|56128717|gb|AAV78223.1| adrA protein [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. ATCC 9150]
 gi|194710345|gb|ACF89566.1| AdrA protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197094858|emb|CAR60391.1| adrA protein [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. AKU_12601]
 gi|197289544|gb|EDY28907.1| AdrA protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204323758|gb|EDZ08953.1| AdrA protein [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 370

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 103/231 (44%), Gaps = 13/231 (5%)

Query: 37  IFIATVIFIANIFLFYIGLT--PFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           +F A +  +    L  + LT  P       L   LSL +I +   LL  ++S     +L 
Sbjct: 141 LFTAGMGLLLASCLVTLQLTGLPVAMRSSSLEVTLSLPVIML-YPLLFAWVSYQTAIKLA 199

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFG 147
               R+  +S  D ++G+ N   +             ++ + +++  DID+FK IND +G
Sbjct: 200 EHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFDHSRRHHREATLLIIDIDHFKSINDTWG 259

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD+ I  L+ QL +       +GR GG+EFA    G+    A    + + + +   +
Sbjct: 260 HDVGDEAIIALTRQLQITLRGSDIIGRFGGDEFAVIMCGTPADSAITAMSRVHERLNTLR 319

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           +     P + + IS G+A    +       +  AD ALY AK +GRNR   
Sbjct: 320 LP--GAPQVMLRISVGVAPLTPQIGHYREWLKSADMALYKAKNAGRNRTEV 368


>gi|261820078|ref|YP_003258184.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
 gi|261604091|gb|ACX86577.1| diguanylate cyclase [Pectobacterium wasabiae WPP163]
          Length = 489

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 80/284 (28%), Positives = 128/284 (45%), Gaps = 39/284 (13%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFI-ATVIFIANIFLFYIGLTPFYG----------- 60
           LC +   E+  P    I F +    F+ A++I ++ I L        +            
Sbjct: 200 LCPKHIRENIFPFQVFIIFLLVSLFFLDASLITLSVIPLTLCAFNYSFPVMSLLCAITGV 259

Query: 61  -LEYILVENLSLVIISITISLLLGYISGSILK-----------ELFISYNR-----ISQL 103
            L Y+ +  + ++I S + + +  +++ + L              F+S NR     I   
Sbjct: 260 ILNYLYINQVGILINSNSEAYINSFLTTARLNIAMLIMAMLSVSHFVSMNRRLIKIIESN 319

Query: 104 SRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           S  D L+   N  AF+S L             +L+++F DIDYFKQ+ND +GH  GD++I
Sbjct: 320 SLKDALTNTFNRRAFLSMLNGKQNVPAHKKKRQLTLLFLDIDYFKQVNDTYGHACGDELI 379

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +  L         + R GGEEF  AA G + +++  +A  LR++ E++ + +  G  
Sbjct: 380 VSFARMLSANIRPSDILCRWGGEEFIIAAYGLTVEQSEAVAEALRRLTESTPLTLHDGRE 439

Query: 216 IHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IH TIS G+A         I  +I  AD+ LY AK  GRNRV  
Sbjct: 440 IHFTISIGVAIFSQYEGGNIYDLIGLADEQLYKAKTQGRNRVCV 483


>gi|322421927|ref|YP_004201150.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Geobacter sp.
           M18]
 gi|320128314|gb|ADW15874.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. M18]
          Length = 715

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 92/208 (44%), Gaps = 25/208 (12%)

Query: 82  LGYISGSI--LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           +  ISG+I  + E     +++  L+  D ++GL N   F   L         Y+ K++++
Sbjct: 243 VMRISGTIQDITERKRIEDQVRSLAYYDNITGLPNRVLFGELLDRALTFARRYHRKVAVL 302

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF------------VGRLGGEEF 180
           F D+D FK+IND  GH  GD+++  ++++L                     V RLGG+EF
Sbjct: 303 FLDLDRFKEINDTLGHAPGDELLKEVAERLKHSIRGYDSLWQGGGVEESTPVARLGGDEF 362

Query: 181 AAAALGSSEQEAAILA-NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIY 238
                     +  I +   + K++   +  +     + +T S GI+      E   T++ 
Sbjct: 363 TIIMEDIQNTKGVIASTQRILKLLA--EPFLLGDVEVCVTASIGISIYPDDGEDAMTLVK 420

Query: 239 RADQALYVAKKSGRNRVVCFSDIENNTC 266
            AD A+Y AK+ GRN    F    N+  
Sbjct: 421 NADTAMYHAKREGRNNAQFFMQALNDAA 448


>gi|157962414|ref|YP_001502448.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Shewanella pealeana ATCC 700345]
 gi|157847414|gb|ABV87913.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella pealeana ATCC 700345]
          Length = 1436

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 7/184 (3%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQIND 144
            S +         + +L+  D L+ L N S  + +LG     +   +++  D+D FK+IND
Sbjct: 985  SDVSRRKQQEEELRKLTNNDLLTNLPNRSNLMVTLGNLVKRDSHHTLMVLDLDNFKKIND 1044

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKII 203
            + GH  GD+++  +S+++ V   +   + RLGG+EFA           +AI+A ++    
Sbjct: 1045 SLGHQAGDELLVQVSERIQVAVPSHTSIYRLGGDEFAILVDKNPDIGTSAIIAKNVIHAF 1104

Query: 204  ENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDIE 262
            E S     S   + + +S GI      +     ++ +AD A+Y AK +G NR   +S+  
Sbjct: 1105 EAS--FELSSEKVVVGLSIGIVLYPEDDQNEQALLRKADIAMYHAKSAGGNRYQFYSESL 1162

Query: 263  NNTC 266
            N   
Sbjct: 1163 NKNA 1166


>gi|134094024|ref|YP_001099099.1| putative GGDEF family protein [Herminiimonas arsenicoxydans]
 gi|133737927|emb|CAL60972.1| conserved hypothetical protein; putative GGDEF domain
           [Herminiimonas arsenicoxydans]
          Length = 300

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 9/177 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
            S + E  I  +R+ +LS  D L+GL N       L         Y+   SI  FD+D F
Sbjct: 122 ASNISERHILEDRLRELSDTDQLTGLFNRRKLEHDLTLHYASSARYSVPTSIFMFDLDNF 181

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND  GH  GD++I  +++             R GG+EF  A   +  ++A   A  L
Sbjct: 182 KKINDTKGHHAGDEIIQAVANICRSAIRKTDTAYRFGGDEFVVALPSTGREQAMQFAKRL 241

Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                      S   ++ +T+S G+             + RAD+ALY  K  G++R+
Sbjct: 242 HDRFRKELSRFSVEGTV-VTVSIGVTIITPEDRSYEDTLKRADRALYEVKSMGKDRI 297


>gi|117922283|ref|YP_871475.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117614615|gb|ABK50069.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 380

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 79/254 (31%), Positives = 121/254 (47%), Gaps = 22/254 (8%)

Query: 25  HTFMIYFSIF-FSIFIA-TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISI--TISL 80
           + F+I+F +   SI+I  T +F A +F+ +  L     ++   ++N+   I  +    +L
Sbjct: 128 YPFLIFFILIGLSIYIQITALFSAFLFVIHYKLDAATNMD---LQNIYFQIAFLYSLAAL 184

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVF 133
           L+  I        +     + + SR D L+G+ N   F S L         +    +++ 
Sbjct: 185 LVMLIFSWSYYNRYCLELALEKGSRTDPLTGVANRRHFDSLLKSEVNRNSRFGSACALII 244

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK+IND +GHP GD VI  L++  V +      V RLGGEEFA     ++   A 
Sbjct: 245 LDIDFFKRINDTYGHPTGDSVICSLANFCVTLSRETDLVARLGGEEFAIILPDTNISSAK 304

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEP-------ISTIIYRADQALY 245
            L   +R  +EN  +   +G  +  TIS GI A + HK            +I  AD ALY
Sbjct: 305 NLGERIRLHVENQSLISETGEKVIWTISLGISALQEHKITKNNNEFIAEQLIQHADTALY 364

Query: 246 VAKKSGRNRVVCFS 259
            AKK GRNR V + 
Sbjct: 365 EAKKGGRNRTVLYD 378


>gi|330504743|ref|YP_004381612.1| cyclic nucleotide-binding protein [Pseudomonas mendocina NK-01]
 gi|328919029|gb|AEB59860.1| cyclic nucleotide-binding protein [Pseudomonas mendocina NK-01]
          Length = 312

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 8/164 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            Q + +D L+G  N                  NE +S++  D+D+FK  ND  GH  GD 
Sbjct: 148 EQNANVDTLTGCFNRRWLEHVFERESTRCAFNNEPMSLLMLDVDHFKTYNDQHGHLAGDY 207

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISS 212
            +  ++  L         + R GGEEF       + + A  +   LR  +E  +      
Sbjct: 208 ALCLVAHTLSSQLRPKDSLIRFGGEEFVILLPEIAAEAARGIGERLRASLEQIASFYSPV 267

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G    +TIS G+A+   ++ +  +I RAD ALY AK+ GRN + 
Sbjct: 268 GVLPGVTISIGLAQMQPQDSLQGLIARADAALYQAKQQGRNCLC 311


>gi|329905918|ref|ZP_08274296.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327547409|gb|EGF32235.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 1004

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 13/184 (7%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEK--LSIVFFDI 136
           +I    + +     +R+ QL+++D L+GLLN + F   L        NE+  ++++F DI
Sbjct: 816 HIMIHDITDKKHEQSRLLQLAQVDSLTGLLNRAGFEQKLAQALSTARNERSLMALLFLDI 875

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D+FK IND  GHPVGD ++   S +L     +   + RLGG+EF     G +   +A   
Sbjct: 876 DHFKSINDTHGHPVGDALLRAFSGRLSRALRSVDTIARLGGDEFTVIMEGITHTDDAEKT 935

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRN 253
           A  +   +    +    G  + IT S G+A  C  +P++   +I +AD  LY AK  GRN
Sbjct: 936 AGKIVDSMRA--LFKLEGLPLSITASIGVA-FCDGKPMAAKELIRQADDMLYQAKAGGRN 992

Query: 254 RVVC 257
           +   
Sbjct: 993 QYCV 996


>gi|307718082|ref|YP_003873614.1| GGDEF domain-containing protein [Spirochaeta thermophila DSM 6192]
 gi|306531807|gb|ADN01341.1| GGDEF domain protein [Spirochaeta thermophila DSM 6192]
          Length = 336

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            + ++L     ++ + +R D L+GL N       L              SI+  DID FK
Sbjct: 159 RVEEQLLAINKKLERSARTDPLTGLGNRREMEERLDAEIGRALRTGSPFSIIMADIDNFK 218

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
             ND +GH  GD ++  L+            + R GGEEF      + ++ A ++A  LR
Sbjct: 219 TFNDTYGHDCGDYILVKLAQLFKQSLRRQDSISRWGGEEFLILLPDTRKEGALVVAEKLR 278

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
             +  +   + +G   ++T++ G++        +   I RADQAL V K SG+N V  
Sbjct: 279 NRVGETPF-LFAGKEHNVTLTFGVSTFDETSHTVYEYIKRADQALLVGKASGKNCVRF 335


>gi|298249770|ref|ZP_06973574.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Ktedonobacter racemifer DSM 44963]
 gi|297547774|gb|EFH81641.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Ktedonobacter racemifer DSM 44963]
          Length = 960

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 70/255 (27%), Positives = 117/255 (45%), Gaps = 22/255 (8%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS 88
           I+  + ++  + T   IA +  +     P        +  ++    ++   L   Y    
Sbjct: 484 IFSQMRWNFTVVTFTLIAIVIGWLCAEIPRKHTLLTTLRKVNTREQALRNQLEEAYHEQQ 543

Query: 89  IL----KELFISYNRI----SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVF 133
           IL    +EL  + +++    ++ +  D ++ L NH A I+ + +         E ++++F
Sbjct: 544 ILVAQQQELLTAVDQLYRENARAAVTDPITNLPNHRAVIAYIDTALREASETRESMALLF 603

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK IND++GHP GD V+  +  +L    G   FVGR GGEEFA     S+  EA 
Sbjct: 604 VDLDRFKLINDSWGHPAGDAVLHEVGIRLQDTVGITNFVGRYGGEEFAVILRHSNVSEAV 663

Query: 194 ILANDLRKIIENSQINISSGP-----SIHITISAGIAERC-HKEPISTIIYRADQALYVA 247
            +A  +R  I                 + IT S GI+    H E    ++ +AD+A+Y A
Sbjct: 664 QVAEKIRHKIMAKPFIWDIDENATPVELTITASIGISIYPYHGETREALLEQADRAMYRA 723

Query: 248 KKSGRNRVV-CFSDI 261
           K SGRNRV   F++ 
Sbjct: 724 KHSGRNRVCIVFAEE 738


>gi|224372280|ref|YP_002606652.1| diguanylate cyclase/phosphodiesterase domain 1 [Nautilia
           profundicola AmH]
 gi|223588392|gb|ACM92128.1| diguanylate cyclase/phosphodiesterase domain 1 [Nautilia
           profundicola AmH]
          Length = 614

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 7/157 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            + S  D L+ + N       L    ++   S++FFDID+FK INDN+GH  GD V+A L
Sbjct: 459 KEKSEFDALTQIYNRGTIEKILNKKIKETDGSLIFFDIDHFKNINDNYGHEKGDLVLASL 518

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  +     +  + GR GGEEF      +  + A  +A  LRKIIE +  +      ++I
Sbjct: 519 ARIIQKNIRSSDYFGRWGGEEFVIILPQAPYEIAYKIAEKLRKIIEQTDFD-----GLNI 573

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           TIS G++E    +    ++ + D+ALY AK SGRN+V
Sbjct: 574 TISLGVSEFKKGDNPEVVLKKVDEALYEAKNSGRNQV 610


>gi|66046170|ref|YP_236011.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63256877|gb|AAY37973.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 318

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 24/190 (12%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
            L ++ ++++ L++ D L+GL N      S+     +        S++  DID+FK+ ND
Sbjct: 122 RLKMAMDQLNLLAQTDGLTGLANRRFLDESIAREWLRMRRNQGAFSLLLLDIDFFKRYND 181

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           ++GH  GD+ +  ++  L      +   V R GGEEFA     +  + A  LA+++ + I
Sbjct: 182 HYGHLQGDECLIAIAHALKKCVHRSTDLVARYGGEEFAVLLPDTGAEGACRLADEIVQHI 241

Query: 204 ENSQINISSGPSIHITISAGIAERCHK---------------EPIS-TIIYRADQALYVA 247
           +       +     +T+S G+A                    + I+  ++  AD+ALY A
Sbjct: 242 QGLNKPHETSDFGRVTVSVGVASLEAGALPVPSPGAAIGLAPDSIAIALLAEADRALYRA 301

Query: 248 KKSGRNRVVC 257
           K  GRN    
Sbjct: 302 KHEGRNCSRF 311


>gi|291296544|ref|YP_003507942.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Meiothermus ruber DSM 1279]
 gi|290471503|gb|ADD28922.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Meiothermus ruber DSM 1279]
          Length = 831

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 11/188 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
            IS   + E      RI  L+  D L+ L N     +             E  ++++ D+
Sbjct: 392 LISIRDVGERKRQQARIEYLAYHDPLTDLPNRRKLWAVAESIFVADRRKRETPALIYLDL 451

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK +ND  GH VGD+++  L+ ++         + R+GG+EFA     +    A   A
Sbjct: 452 DNFKLVNDTLGHQVGDELLRQLALRIKGTLRQDDLLARMGGDEFAVLLPSADRNSAMAAA 511

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             + ++  +   N+     +H   S G+A    H + +  +   AD A+Y AK++ + +V
Sbjct: 512 RRIVEVF-DHPFNLGE-HVLHARASLGVALYPEHGQTLDELARAADVAMYQAKQA-QTQV 568

Query: 256 VCFSDIEN 263
             +   ++
Sbjct: 569 AVYDPAQD 576


>gi|50086486|ref|YP_047996.1| hypothetical protein ACIAD3531 [Acinetobacter sp. ADP1]
 gi|49532462|emb|CAG70174.1| conserved hypothetical protein; putative conserved domain GGDEF
           [Acinetobacter sp. ADP1]
          Length = 393

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 119/245 (48%), Gaps = 16/245 (6%)

Query: 31  FSIFFSIFIATVIFIANIFLF---YIGLTPFYGLEYILVENL-------SLVIISITISL 80
           + I+ ++  AT++ +   +L    YI   P + +  +            S+V  S+ I +
Sbjct: 144 WLIYITLIPATLLLLIAGYLSLKQYIPYAPVFNIAALKPSPAQHNFWVGSMVFFSVPILI 203

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFD 135
               +   +L +     + I +LS++D L+ LLN  +    L  +++       +++  D
Sbjct: 204 GFFGLFEILLSQWREREDEIKRLSQLDFLTNLLNRRSIHQVLDHFHQTRAEKNYAVILLD 263

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D+FKQIND +GH VGD+V+  +S+ L         +GR GGEEF      +S   A  +
Sbjct: 264 LDHFKQINDQYGHHVGDQVLIAISECLTQHVHPLNNIGRFGGEEFIILIPETSLSAAREI 323

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A   R  I+   I  +   +I ++ S G+A    +   S I+ +ADQALY AK  GRN+V
Sbjct: 324 AECCRLAIQQLNIATTQD-NIQLSASFGVAISSLQYEASQILTQADQALYFAKACGRNQV 382

Query: 256 VCFSD 260
             F +
Sbjct: 383 RTFPE 387


>gi|186684100|ref|YP_001867296.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Nostoc punctiforme PCC 73102]
 gi|186466552|gb|ACC82353.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Nostoc punctiforme PCC 73102]
          Length = 427

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 12/187 (6%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFF 134
             +    + +   +  ++ + +  D L+ L N   F+  L    E+         +++F 
Sbjct: 243 AVLVFQDITKRKQTEAQLIRNAFYDGLTALPNRVLFLDRLRQTIERSKRRSDYYFAVLFL 302

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAA 193
           D+D FK+IND FGH +GD  +  ++ +L         V R GG+EF           +A 
Sbjct: 303 DLDGFKEINDRFGHGIGDDFLVAIARRLESCLRGGDTVARFGGDEFTVLLEDIKDITDAT 362

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGR 252
            +A  +++ + +      +G  +  T S GIA    + E  +T++  AD A+Y AK+ G+
Sbjct: 363 NVAKRIQESLRS--PLHLNGYELSTTASIGIAWNFSNYEEPATLLRDADIAMYRAKRQGK 420

Query: 253 NRVVCFS 259
                FS
Sbjct: 421 ATYAIFS 427


>gi|330808026|ref|YP_004352488.1| diguanylate cyclase with PAS/PAC and GAF sensors [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327376134|gb|AEA67484.1| Putative diguanylate cyclase with PAS/PAC and GAF sensors
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 449

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 81/181 (44%), Gaps = 13/181 (7%)

Query: 81  LLGYISGSI--LKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSI 131
           LL Y+   I    E    + R+  +++ D L+ + N                + + ++++
Sbjct: 264 LLQYVCAQITVAIERKQLHARLQHMAQYDQLTQVPNRELLRERFKCALASARAASGRMAL 323

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQ 190
           ++ D+D FKQIND +GH VGD ++  ++++L         V R+GG+EF        + +
Sbjct: 324 LYIDLDRFKQINDTYGHGVGDMLLQAVANRLKGCIRDTDTVARIGGDEFVVLLHSIQALE 383

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKK 249
           +A  +   +R  +   Q     G  + I  S G+A           +   AD+A+Y AK+
Sbjct: 384 DAQRVQEKIRHALA--QPLRLDGHCLSIEPSIGVACFPDHGTEDVALFRHADEAMYAAKR 441

Query: 250 S 250
            
Sbjct: 442 Q 442


>gi|229065065|ref|ZP_04200360.1| GGDEF domain protein [Bacillus cereus AH603]
 gi|228716207|gb|EEL67923.1| GGDEF domain protein [Bacillus cereus AH603]
          Length = 343

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 66/237 (27%), Positives = 112/237 (47%), Gaps = 18/237 (7%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY---I 85
           + + +  SIF   +    N++   I + P     YIL +++ +V + +   ++  Y   +
Sbjct: 111 LIWRMKISIFTKWIWL--NVYSLSILILPL----YILFKDIYVVALYLVCCIVAAYFTFV 164

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           S S + +    +  +   + ID L+ L N   F   +  +       N+ L ++  DID+
Sbjct: 165 SASYVLQSNELFQTMKHYATIDALTNLGNVRQFDFEMNRHIGSKHMKNDSLCLLLIDIDH 224

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND +GHP GD+V+  L   L+     P  V R GGEEFA             +   
Sbjct: 225 FKYVNDTYGHPAGDEVLKQLGRILLENAPFPNLVFRKGGEEFALLLPKKRVAFGTRIGEQ 284

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +R  +E     + +G  I IT+S G++E   K+     I  AD ALY +K++GRN+V
Sbjct: 285 IRLAVEKHSFQLQNGEKIKITVSVGLSEY--KKSPEQFIQSADDALYYSKRNGRNKV 339


>gi|229194941|ref|ZP_04321722.1| Sensory box/GGDEF [Bacillus cereus m1293]
 gi|228588509|gb|EEK46546.1| Sensory box/GGDEF [Bacillus cereus m1293]
          Length = 569

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 88/175 (50%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++        +  +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKREFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQA-- 252

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             I  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 253 PFILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 307


>gi|222149457|ref|YP_002550414.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221736440|gb|ACM37403.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 626

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 17/211 (8%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           LE ++    S  I S  +++     S  +L+E       + +L+  D L+ L N   F  
Sbjct: 415 LETVITRVRSFDISSGMVAVTRDVTSQRLLQE------ELDRLANTDELTQLSNKRHFNR 468

Query: 121 SLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFV 172
            L S           LS++  D+D FK  ND +GH  GD  +  +S ++           
Sbjct: 469 QLKSLSAEARMVGTPLSLLVVDVDKFKLFNDTYGHLPGDNCLRKISTEIAAAIRPGTDLA 528

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAE--RCH 229
            R GGEE      G +  +A  +  ++R+ I   +I      P  H+T+S G+AE    H
Sbjct: 529 ARYGGEEIVILLPGKTASQAHQVGEEIRQRIAALEIIHQKNLPWGHVTVSIGVAEQSPAH 588

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            E    +  +AD+ LY AK SGRN+VV F +
Sbjct: 589 DETDEALFVKADKCLYTAKNSGRNKVVSFDE 619


>gi|254285167|ref|ZP_04960133.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|150425170|gb|EDN16947.1| GGDEF family protein [Vibrio cholerae AM-19226]
          Length = 469

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 57/214 (26%), Positives = 106/214 (49%), Gaps = 4/214 (1%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            I   ++ +   Y    + +    L++  +  +L L        ++L  +  ++S L++ 
Sbjct: 253 RILSRWVHIETIYPRYLMPILASGLLLSIVIYTLQLRRTVRLRTQQLEEANQKLSYLAKT 312

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ + N  +F   L +   +   L+++ FDID FK IND FGH  GD  I F+   + 
Sbjct: 313 DSLTDIANRRSFFEYLEAEQTRSGSLTLMVFDIDDFKTINDRFGHGAGDNAICFVVGCVR 372

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
               +  +  R+GGEEFA  A G + +E+  LA  + + +   +  +++  S+ +TIS G
Sbjct: 373 QALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKKWVVNAQHSLSLTISLG 432

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            A   H     ++ + AD  +Y  K++G+N+VV 
Sbjct: 433 CAFYLHPARPFSL-HDADSLMYEGKRNGKNQVVF 465


>gi|153829938|ref|ZP_01982605.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|148874573|gb|EDL72708.1| GGDEF family protein [Vibrio cholerae 623-39]
          Length = 512

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 74/167 (44%), Gaps = 13/167 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHP 149
             R+  ++  D L+G  N   F              +  LS+   D+D+FKQ+NDN+GHP
Sbjct: 350 QKRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHP 409

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  +             + R GGEEF       ++QEA      +R  I      
Sbjct: 410 AGDLVLQRVVALCQRHIAQVGTLCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMHA-- 467

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                   +T+S G+ +    E +  +  RADQA+Y AK  GRN+VV
Sbjct: 468 ----SQPQVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 510


>gi|114332092|ref|YP_748314.1| diguanylate cyclase [Nitrosomonas eutropha C91]
 gi|114309106|gb|ABI60349.1| diguanylate cyclase [Nitrosomonas eutropha C91]
          Length = 269

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 7/182 (3%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDID 137
           ++ + ++ L +   ++ +L   D ++G  N     +               L  V  D+D
Sbjct: 88  LAENQIESLKLELEQLRELIHYDPMTGTFNRRGLDAVYLREAARADRNENTLCAVMIDLD 147

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK IND +GH  GD V+  L             V R GGEEF      ++ + A  +  
Sbjct: 148 NFKCINDAYGHQFGDDVLIHLVKLAKKSLRPSDVVARYGGEEFVILLPDTTLESAVWVMQ 207

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            L+       +    G S+ I  S GIA R  +E   +++ RAD+AL  AKKSG+NR++ 
Sbjct: 208 RLQNSFSKKTLPDMDGSSVPIAFSGGIAFRQLRESQKSLLKRADEALCQAKKSGKNRIMI 267

Query: 258 FS 259
            S
Sbjct: 268 AS 269


>gi|95929198|ref|ZP_01311942.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95134696|gb|EAT16351.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 554

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 89/188 (47%), Gaps = 10/188 (5%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKL--SIV 132
           L     +  ++ +L   + +    +  D L+ L N   FI            ++L  +++
Sbjct: 345 LAANQQNAQLINQLEHEHKQAVDAASRDPLTNLYNRRLFIELAQKQLLYSKRKELLCAVL 404

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F D+D FK+IND +GH +GD ++  ++D+L         + R GG+EF     G +  + 
Sbjct: 405 FLDLDRFKEINDTYGHHIGDLLLKKVADRLRDTLREADIIARYGGDEFVILLDGITRDDH 464

Query: 193 A-ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
              +   L   +     N+  G +IH T S G+A    H E + T++ +AD A+Y +K++
Sbjct: 465 TFQITEKLVHTLSRPYTNL-DGLTIHTTPSIGVAMFPKHAEDVQTLLLQADVAMYWSKEN 523

Query: 251 GRNRVVCF 258
           GR +   F
Sbjct: 524 GRAQWTLF 531


>gi|304392182|ref|ZP_07374124.1| diguanylate cyclase [Ahrensia sp. R2A130]
 gi|303296411|gb|EFL90769.1| diguanylate cyclase [Ahrensia sp. R2A130]
          Length = 262

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 59/250 (23%), Positives = 103/250 (41%), Gaps = 9/250 (3%)

Query: 16  EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIIS 75
            + ++      F IY        +    F A   L  I      G +  L+  L  ++  
Sbjct: 14  AERMKRSQDAIFWIYAIGAAGSLLLAASFWALQSLQNIIFLGLTGEQISLILALVTLLFG 73

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEK 128
           + ++L          +EL      +      D L+ L N   F  +L  Y          
Sbjct: 74  LVVALPELRSKAKFSEELSGRTAELEVAVVTDPLTKLYNRRYFEDALNEYLAEFTKIGAP 133

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+++  D+D+FK +ND +GH  GD V+  L++ L  +      V R GGEEF   A  ++
Sbjct: 134 LAVLSLDLDHFKSVNDTYGHDAGDVVLKRLAENLQGLIREHDIVARTGGEEFCIVAPFAN 193

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247
             +    A  + + +   +++I +   +  TIS G+A        +  ++  +D  LY+A
Sbjct: 194 PAQIRPFAERICRHVGEMRVDIGN-VVLRPTISIGVASTVDGVSNVKELLKLSDHRLYLA 252

Query: 248 KKSGRNRVVC 257
           K+ GRNRV  
Sbjct: 253 KEQGRNRVAA 262


>gi|296108287|ref|YP_003619988.1| Predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Legionella pneumophila
           2300/99 Alcoy]
 gi|295650189|gb|ADG26036.1| Predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Legionella pneumophila
           2300/99 Alcoy]
          Length = 835

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 10/183 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           I G+ +  L  + N +  L+R D L+ + N   F   L           + L+++  D+D
Sbjct: 390 IYGTDITPLKNTQNAMLNLTRRDTLTQIANRQYFEEKLIEKIYEHHLKEKSLALLLIDLD 449

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND  GHP GDK++  +++++        F+ RLGG+EF       +   A  +A 
Sbjct: 450 NFKIVNDTLGHPTGDKLLMAVTNRMTRCLRANDFIARLGGDEFIVLLDQCNTDTAVKVAE 509

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256
            +  ++   +        + IT S GIA       I S ++  AD A+Y +KK+G+N+  
Sbjct: 510 KIINVL--GKPFQFDEYHMTITASIGIAIYPETSEIASDLLKYADIAMYQSKKTGKNKCT 567

Query: 257 CFS 259
            FS
Sbjct: 568 VFS 570


>gi|254559634|ref|YP_003066729.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens
           DM4]
 gi|254266912|emb|CAX22711.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL) with
           PAS sensor; putative membrane-associated protein
           precursor [Methylobacterium extorquens DM4]
          Length = 714

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 10/181 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQIND 144
            E + + NRI+ ++R D ++ L N       +             +++  D+D FKQ+ND
Sbjct: 273 TERWNAENRIAHMARHDAVTDLPNRVLLRERIEGAITRARRETGFAVLCLDLDNFKQVND 332

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
             GH VGD+++  ++ +L         V RLGG+EFA      ++  +AA LA  +  ++
Sbjct: 333 TLGHAVGDELLRAVAHRLRACLREVDTVARLGGDEFAIIQASVATPADAATLAQRILDVV 392

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             S     +  S+ + +S GIA           ++  AD ALY AK  GR     F    
Sbjct: 393 --SAPYALAHHSVIVGVSIGIALAPGDGLEPERLMQCADVALYRAKDDGRGVFRFFEAQM 450

Query: 263 N 263
           +
Sbjct: 451 D 451


>gi|28867734|ref|NP_790353.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28850969|gb|AAO54048.1| GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 431

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 119/285 (41%), Gaps = 36/285 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL------FYIG 54
           + +S    L +WL  +    +    ++M    + +++F+ +   +   +L          
Sbjct: 140 LEQSYPVELQVWLA-DIRWPALHG-SWMSLIQLSYAMFLLSFAVLIWQYLEKPRPLHAAQ 197

Query: 55  LTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           +    GL + L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL 
Sbjct: 198 IVGLLGLFWALPKTFILPFTLNILCSQVMLMIAAAVAHEAY-------QMAFRDELTGLP 250

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A    +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        
Sbjct: 251 GRRALNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGRAY 310

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-------------------P 214
           R GGEEFA      +  E       +R+ I N  I + +                     
Sbjct: 311 RYGGEEFAIVFAAKTIDECMPHLEAIRETIANYAIQLRNKDSRPQDDQQGRQRRSGAHEA 370

Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S+ +T+S G+AER         ++  ADQALY AK +GRN VV +
Sbjct: 371 SVSVTVSIGVAERQPEHRTPEEVLKSADQALYAAKGAGRNCVVAY 415


>gi|315185919|gb|EFU19684.1| diguanylate cyclase with PAS/PAC sensor [Spirochaeta thermophila
           DSM 6578]
          Length = 336

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
            + ++L     ++ + +R D L+GL N       L              SI+  DID FK
Sbjct: 159 RVEEQLLAINKKLERSARTDPLTGLGNRREMEERLDAEIGRALRTGSPFSIIMADIDNFK 218

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
             ND +GH  GD ++  L+            + R GGEEF      + ++ A ++A  LR
Sbjct: 219 TFNDTYGHDCGDYILVKLAQLFKQSLRRQDSISRWGGEEFLILLPDTRKEGALVVAEKLR 278

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
             +  +   + +G   ++T++ G++        +   I RADQAL V K SG+N V  
Sbjct: 279 TRVGETPF-LFAGKEHNVTLTFGVSTFDETSHTVYEYIKRADQALLVGKASGKNCVRF 335


>gi|262368657|ref|ZP_06061986.1| WspR [Acinetobacter johnsonii SH046]
 gi|262316335|gb|EEY97373.1| WspR [Acinetobacter johnsonii SH046]
          Length = 420

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 80/288 (27%), Positives = 131/288 (45%), Gaps = 32/288 (11%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI--LVE 67
           + WL    + E+      MI   I+   ++ T +    +F+  I       L  I  LV+
Sbjct: 132 TTWLTMSVHTEALRHQAMMIICMIYVLGYLLTGVKPGYVFMTGIAAAGVSFLVLISTLVK 191

Query: 68  NLSLVIISITI-SLLLGYISGSIL--KEL----------------FISYNRISQLSRIDC 108
             ++V+  +   S LLG+I   ++  +E                  I  + +  LS+ D 
Sbjct: 192 FDAIVMGRVMFGSCLLGFIISRMIYARERIIFLNIRRAKISEKIHRIHTSELLHLSQNDE 251

Query: 109 LSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ + N   F   + +Y E        LSI+F D+D+FK+ ND +GH  GD VI+ ++  
Sbjct: 252 LTKISNRRNFDEMMDTYYEQSRQDETPLSILFIDVDFFKKYNDFYGHQKGDDVISSIAKS 311

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITI 220
           +        FV R GGEEF      +    A  +A+++ + IE  +I    S  S  +TI
Sbjct: 312 IKNAIRHMDFVARYGGEEFVVLLPETDAHGAYAVASNIYRAIERLEIPHEMSEVSPFVTI 371

Query: 221 SAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           S GI     +  +S   ++  ADQALY AKK GRN++  +  +  +TC
Sbjct: 372 SLGITVFKGEVDLSKVELLGIADQALYRAKKLGRNQI-YYQPLTTSTC 418


>gi|312112082|ref|YP_003990398.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y4.1MC1]
 gi|311217183|gb|ADP75787.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y4.1MC1]
          Length = 953

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 11/190 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDI 136
           Y  G  + E   +  +IS L+  D  + L N + F+             N KL++VF D+
Sbjct: 506 YGIGRDITEQKKAEEKISYLAYYDPDTHLPNRTKFMEIITEQLEKAKRKNRKLAVVFIDL 565

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FK+IND+ GH  GD+++  +  +++ V      +GR  G++F     G    ++    
Sbjct: 566 DRFKRINDSIGHYAGDEILKQVVQRILHVLPIEAHLGRFHGDKFCLLLTGQIHSEKVFET 625

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A  + K  E ++  +  G    IT S GI+          +++  AD A+  AK+SG NR
Sbjct: 626 ATRIAK--EMTKPIVYDGKEFFITASIGISFYPSDGVDAHSLLKNADIAVSRAKRSGGNR 683

Query: 255 VVCFSDIENN 264
           V  +S   N+
Sbjct: 684 VQFYSAKMND 693


>gi|188580154|ref|YP_001923599.1| diguanylate cyclase/phosphodiesterase [Methylobacterium populi
           BJ001]
 gi|179343652|gb|ACB79064.1| diguanylate cyclase/phosphodiesterase [Methylobacterium populi
           BJ001]
          Length = 685

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 10/181 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQIND 144
            E + +  RI+ ++R D ++ L N       +             +++  D+D FKQ+ND
Sbjct: 244 TERWNAEARIAHMARHDAVTDLPNRVLLRERIEGAITQARRETGFAMLCLDLDNFKQVND 303

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
             GH VGD+++  ++ +L         V RLGG+EFA      ++  +AA LA  +  ++
Sbjct: 304 TLGHAVGDELLRAVAHRLRACVREVDTVARLGGDEFAIIQAAVTTPADAATLAQRILDVV 363

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             S     +  S+ + +S GIA           ++  AD ALY AK  GR     F    
Sbjct: 364 --SAPYALTHHSVIVGVSIGIALAPGDGLEAERLMQCADVALYRAKGDGRGVFRFFEAEM 421

Query: 263 N 263
           +
Sbjct: 422 D 422


>gi|13472065|ref|NP_103632.1| hypothetical protein mll2240 [Mesorhizobium loti MAFF303099]
 gi|14022810|dbj|BAB49418.1| mll2240 [Mesorhizobium loti MAFF303099]
          Length = 357

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 89/175 (50%), Gaps = 7/175 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEKL-SIVFFDIDYFKQIND 144
             + E  I  +R+  L+  D ++GL N + F + L     +  L +++  D+D FK +ND
Sbjct: 173 QDITEEKILSDRMRYLAEFDPMTGLANRARFQARLAQPDASRPLGALLLIDLDGFKAVND 232

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH VGD+ +   +++L    G    V R+GG+EFA    GS    AA ++   R+IIE
Sbjct: 233 TFGHVVGDECLKAAAERLAEGCGEADLVARVGGDEFAVLL-GSHLDRAA-VSGVAREIIE 290

Query: 205 NS-QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +  +  G S+ +  S GIA      P   +  +AD ALY AK +GRN    F
Sbjct: 291 GMGKPVVVRGQSLRLGASVGIAFAGQGAPCD-LFAQADTALYAAKAAGRNTFRIF 344


>gi|323499455|ref|ZP_08104427.1| PAS/GGDEF domain-containing protein [Vibrio sinaloensis DSM 21326]
 gi|323315511|gb|EGA68550.1| PAS/GGDEF domain-containing protein [Vibrio sinaloensis DSM 21326]
          Length = 679

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 7/171 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            + + ID L+GL N   F   L    +    L +++ DID FK IND+ GH +GDKVI  
Sbjct: 250 QEDAHIDSLTGLYNRFGFTKRLEQLIQNETPLIMLYLDIDNFKNINDSLGHHIGDKVIKE 309

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSI 216
           +S +L  +      +G LGG+EF        + + A +L+  +  +I  +Q       S 
Sbjct: 310 VSSRLKRLLPQQAVLGHLGGDEFGLILPEPENNRMAEMLSERIISLI--NQPFDLHHFSK 367

Query: 217 HITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            +  S G +A          ++  AD A+Y AK  GRNR++ F+D  N   
Sbjct: 368 RLACSIGSVAYPGDGNDARILLQNADTAMYEAKDRGRNRLIKFNDQMNKEA 418


>gi|313682755|ref|YP_004060493.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
 gi|313155615|gb|ADR34293.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
          Length = 923

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 13/198 (6%)

Query: 81  LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
            LGY  S + + E   S  +I+ LS  D L+ L N +  +  L           +  +++
Sbjct: 469 FLGYRGSNTDISERKYSEEKINGLSFFDQLTALPNRTLLMDRLKQAMAAGSRNGKYGALL 528

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQ 190
           F D+D FK +ND  GH +GD ++  ++ +L         V R GG+EF      L  SE 
Sbjct: 529 FIDLDNFKTLNDTLGHEIGDSLLKLVAQRLSGCVREGDTVSRFGGDEFVVVLGELSVSET 588

Query: 191 EAAILANDLRKII--ENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVA 247
           +AA     + + I    +Q     G +   + S GI      +     ++ +AD A+Y +
Sbjct: 589 DAATAGELVAEKILGSLNQPYFLGGINHRSSASIGITLFKGDDTSTDDLMKQADLAMYKS 648

Query: 248 KKSGRNRVVCFSDIENNT 265
           K +GRN +  F     +T
Sbjct: 649 KDAGRNGLSFFDPNMEHT 666


>gi|148975747|ref|ZP_01812578.1| GGDEF family protein [Vibrionales bacterium SWAT-3]
 gi|145964820|gb|EDK30072.1| GGDEF family protein [Vibrionales bacterium SWAT-3]
          Length = 338

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 88/176 (50%), Gaps = 5/176 (2%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQI 142
           + S + +L      + + +  D  + L N  +F   L      N+ L ++  DID+FK  
Sbjct: 161 ATSEISKLKSQLVEVQKDALFDSTTTLYNRRSFDRDLETLCEANQSLCLILLDIDHFKNF 220

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD V+  ++ +L +     +   R GGEEFA      S + A  LA+  R+ 
Sbjct: 221 NDTYGHLFGDMVLKGIARKLKLSCREGISAYRFGGEEFALIVPNKSVRIARQLADTNRRS 280

Query: 203 IENSQI-NISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +E   I +  SG  +  IT S G+AE    E   ++I RAD+ LY AK  GRNRV+
Sbjct: 281 LEKLSIKDRRSGEQVGNITASFGVAELEPGESPQSLIERADRLLYEAKTLGRNRVM 336


>gi|120611490|ref|YP_971168.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acidovorax citrulli AAC00-1]
 gi|120589954|gb|ABM33394.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax citrulli AAC00-1]
          Length = 1260

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 11/186 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            +    +  + + QL+  D L+GL N       L            +L + + D+D FK 
Sbjct: 808 DVTSQRVQEDMLQQLAHFDALTGLPNRVQLARRLEQAMAHARAGGWQLGVAYLDLDGFKP 867

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           +ND  GH  GD+++  ++ +L         V RLGG+EF        S  +A  L + L 
Sbjct: 868 VNDRLGHSAGDRLLVIVAGRLTRALRAVDCVARLGGDEFVLLMPELQSHADAEQLLHRLM 927

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +            + +T S G            T++  AD A+Y AK+ GRNRV  F 
Sbjct: 928 ENLAA--PYTLGTERVTVTASVGYTLYPEDASDADTLLRHADHAMYGAKQGGRNRVQPFD 985

Query: 260 DIENNT 265
            ++   
Sbjct: 986 AVQERA 991


>gi|104780457|ref|YP_606955.1| response regulator/GGDEF domain-containing protein [Pseudomonas
           entomophila L48]
 gi|95109444|emb|CAK14145.1| putative response regulator/GGDEF domain protein [Pseudomonas
           entomophila L48]
          Length = 334

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 82/176 (46%), Gaps = 11/176 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+GL N   F   L           ++LS++  D+DYFK  N
Sbjct: 156 QQLLDTNLMLQRLMNSDGLTGLSNRRHFDEYLELEWRRAMREQQQLSLLMVDVDYFKAFN 215

Query: 144 DNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D+FGH  GD+ +  +++ +            R GGEEFA     +S   A ++A  LR+ 
Sbjct: 216 DSFGHLAGDEALRQVAEAIRGCCSRPTDLPARYGGEEFALVLPNTSPGGARLIAEKLRQT 275

Query: 203 IENSQINISSGPSIH-ITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255
           I    I  +   +   +T+S G+A            +I  AD  LY AK SGRN+V
Sbjct: 276 IMGLNIAHTVPEAGSLLTVSIGVATLTPSVGSHCRQLISAADTGLYKAKNSGRNQV 331


>gi|91791817|ref|YP_561468.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91713819|gb|ABE53745.1| diguanylate cyclase [Shewanella denitrificans OS217]
          Length = 641

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 11/176 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+EL     ++ + + +D L+G+ N +AF   L             ++I+  DID FK I
Sbjct: 459 LRELNDVNQKLLEQTTLDSLTGVKNRNAFDKRLVAEGRISRRQQTPMAILMLDIDKFKSI 518

Query: 143 NDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND FGH  GD  I  ++  L   +      V R GGEEFA     +    A I+A  +R 
Sbjct: 519 NDEFGHLGGDHCIQSIAKVLTEQLKRPTDLVSRFGGEEFAIILPNTDLDGAMIVAETVRA 578

Query: 202 IIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            I+  Q+     P + I+ S G+  A     E    ++  AD+ALY AK++GRNR+
Sbjct: 579 SIDELQLVWDEKP-MKISASLGVSAAVIESDEHPIELLELADKALYQAKRNGRNRI 633


>gi|307153554|ref|YP_003888938.1| PAS/PAC sensors-containing diguanylate cyclase/phosphodiesterase
           [Cyanothece sp. PCC 7822]
 gi|306983782|gb|ADN15663.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7822]
          Length = 688

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 13/191 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           L+  YI    + E  ++   +   +  D L+GL N   F   L +        N  L+++
Sbjct: 237 LIRSYIF--DITERKLAEEILHYQAYYDTLTGLPNKILFNQQLATALADAHFKNTLLAVL 294

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQE 191
           F D+D F+ +ND  GH  GD+++   + +L        F  R  G+EF        + +E
Sbjct: 295 FIDLDGFQNVNDTLGHSTGDQLLRSFAQRLKTRLCAGDFFARWAGDEFTILVPYLENIEE 354

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
           A  LA  +  I++    NIS    +++  S GIA      E   T++  AD ALY +K+ 
Sbjct: 355 AKNLAQRIFNILQQ-PFNISDNL-LYLKASIGIAIYPQDGEDAETLVKNADAALYRSKEI 412

Query: 251 GRNRVVCFSDI 261
           G+N    ++ I
Sbjct: 413 GKNNYQFYNPI 423


>gi|156935539|ref|YP_001439455.1| hypothetical protein ESA_03401 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533793|gb|ABU78619.1| hypothetical protein ESA_03401 [Cronobacter sakazakii ATCC BAA-894]
          Length = 590

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 50/193 (25%), Positives = 87/193 (45%), Gaps = 13/193 (6%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GS 124
           V + +    L   ++   L+      + +++ +  D L+GL N      +L         
Sbjct: 396 VYLELMAETLALALANQKLR------DELTEKAMFDSLTGLRNRYHLEDALYACISQAEM 449

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
               +S +  DID+FK +ND +GH  GD V+  ++  +  V G    V R GGEEF    
Sbjct: 450 TGSPVSCLMIDIDHFKSLNDQYGHDAGDAVLKEVARTIRSVPGETAQVFRYGGEEFLMLL 509

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
            G  + +A  LA  +   +    +  +      +++S G+A         ++I  AD AL
Sbjct: 510 PGMPQAQAHALATRILTQVSELSLRYNGLEIGPVSVSIGLATWPDHARRESLIKNADIAL 569

Query: 245 YVAKKSGRNRVVC 257
           Y+AK+ GR+R+V 
Sbjct: 570 YLAKEMGRSRIVV 582


>gi|71282294|ref|YP_268360.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71148034|gb|AAZ28507.1| sensory box sensor/GGDEF/EAL domain protein [Colwellia
           psychrerythraea 34H]
          Length = 1075

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 79/188 (42%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S + E       I + +  D L+ L N   FI  L           +K +++F D+D FK
Sbjct: 631 SDITEKKKKDALILRQANYDSLTNLPNRRMFIDRLEQEIKVSHRKKQKFALIFIDLDNFK 690

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
            IND  GH  GD+++     ++         V RLGG+EF       SE      +   +
Sbjct: 691 NINDTRGHVFGDQLLTEAGKRITHCVREVDTVARLGGDEFTILLSDLSEIYNVESICQKV 750

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCF 258
             ++  SQ    S    +I+ S G+    +    +  ++  ADQA+Y+AK  GRN+   F
Sbjct: 751 --LLALSQPFCISKLYTYISASLGVTIYPNDASTTLELLKNADQAMYLAKDLGRNQFCYF 808

Query: 259 SDIENNTC 266
           +       
Sbjct: 809 TASMQEQA 816


>gi|300869314|ref|ZP_07113905.1| Regulatory components of sensory transduction system [Oscillatoria
           sp. PCC 6506]
 gi|300332691|emb|CBN59103.1| Regulatory components of sensory transduction system [Oscillatoria
           sp. PCC 6506]
          Length = 456

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 64/255 (25%), Positives = 106/255 (41%), Gaps = 24/255 (9%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LVENLSL 71
           L  +K L  F P  F  +  I     + T   +   F    G + +Y    + L +  ++
Sbjct: 210 LALKKFLSRFEPELFTRFVEI-----VETGEPLKRDFYSPSGESSWYHFVAVKLGDGFAI 264

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GS 124
            I  IT           +   L  + +++  L+ +D L+ + N   F   L         
Sbjct: 265 TIRDITA-------RKQVEMALQDANHKLELLANLDGLTQVANRRCFNERLHREWSRLAR 317

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAA 183
             + LS++ FD+D FK  ND +GH  GD  +  ++  +   V      V R GGEEF   
Sbjct: 318 EQQPLSLILFDVDKFKSYNDYYGHLAGDDCLIKIAQAVQQEVHRPADLVARYGGEEFVIL 377

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIAERCHKEPI--STIIYRA 240
              +       +A ++++II N  I        +I T+S GI        +   T++  A
Sbjct: 378 LPNTDLAGGINVAANIQQIIHNLAIPHKQSNVNNIVTVSLGITSSIPTLEVRPDTLVAHA 437

Query: 241 DQALYVAKKSGRNRV 255
           D+ALY AK+ GR+R 
Sbjct: 438 DKALYQAKEYGRDRY 452


>gi|218549979|ref|YP_002383770.1| hypothetical protein EFER_2664 [Escherichia fergusonii ATCC 35469]
 gi|218357520|emb|CAQ90159.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469]
 gi|325498354|gb|EGC96213.1| hypothetical protein ECD227_2451 [Escherichia fergusonii ECD227]
          Length = 472

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 7/165 (4%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ LLN     + +           +  ++   DIDYFKQIND +GH  GD  +  +S
Sbjct: 307 DSLTQLLNRRFIPTIMRREISIALHSRKPFALAMLDIDYFKQINDRYGHNAGDNTLKNVS 366

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +     +  +V R GGEEF    + +   +A I+  +LR  +   +I  S+  S  +T
Sbjct: 367 AMIYEHIRSSDYVFRYGGEEFMILLVETELSQAKIILENLRNKMAGLRIQASASESFSVT 426

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +S G+AE  +      +I +AD ALY AK  GRNRV  F     N
Sbjct: 427 VSIGVAEYDYHPDYKLLIEKADSALYYAKSQGRNRVEVFQPHMTN 471


>gi|254427274|ref|ZP_05040981.1| GGDEF domain protein [Alcanivorax sp. DG881]
 gi|196193443|gb|EDX88402.1| GGDEF domain protein [Alcanivorax sp. DG881]
          Length = 412

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 11/173 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ +LSR D L+GL N   F               + L+++  D+D FK  ND++GH  
Sbjct: 222 ERLHRLSREDSLTGLANRRFFDEAFDREWRRCKRSRQPLTVMLVDVDRFKAYNDHYGHLQ 281

Query: 151 GDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD  +  L+ +           V R GGEEF      + E EA  LA+ L + + +  I 
Sbjct: 282 GDLCLQKLAAEFRRYSRRGGDLVARFGGEEFVLLYPETDEVEAQQLASRLCRSVRSLAIP 341

Query: 210 ISSGPSIH-ITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFS 259
            +  P +  +T+S G A     +      ++  AD+ALY+AK+ GR+    + 
Sbjct: 342 HADNPEMQEVTVSVGAAMMIPGDRHSAGDLLEAADRALYLAKQGGRDDWRMYE 394


>gi|218530687|ref|YP_002421503.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
 gi|218522990|gb|ACK83575.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
          Length = 405

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/255 (25%), Positives = 109/255 (42%), Gaps = 16/255 (6%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           L+IW   ++ L S  P   ++            + F   I       +P++ +       
Sbjct: 136 LTIWQGRDEPLVSRYPALVLLATYAGLYWIRLPLAFTMPIPASVAIASPWFAI------- 188

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
             L       S+ + ++  ++ KE      R++  +  D L+G+ N  A ++    +   
Sbjct: 189 --LCFAGTLFSVAIAFVFMALTKERAEREQRLA--AETDSLTGIANRRALVAGAERHLAV 244

Query: 129 LSIVF--FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
                  FD+D+FK +ND +GH VGD V+A        +       GR+GGEEFA     
Sbjct: 245 APAALLLFDLDHFKAVNDRYGHSVGDAVLAAFCHVADPLLPPGAVFGRMGGEEFACLLPR 304

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALY 245
             E+ A  +A D+R  I   +      P + I +S G+A        +  ++ RAD ALY
Sbjct: 305 LDERAAMRVAEDVRAAIA--RFAHPDYPELAIRVSVGVAAESQIGGSLDYLLRRADDALY 362

Query: 246 VAKKSGRNRVVCFSD 260
            AK +GR+RVV   +
Sbjct: 363 QAKHAGRDRVVAAGE 377


>gi|77458276|ref|YP_347781.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1]
 gi|77382279|gb|ABA73792.1| putative transmembrane sensory box GGDEF domain protein
           [Pseudomonas fluorescens Pf0-1]
          Length = 357

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 64/197 (32%), Positives = 87/197 (44%), Gaps = 10/197 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
           + +     L LG+I       L +    +  LSR D L+GLLNH A+             
Sbjct: 152 LPLLTLYPLALGWICFRQAYTLGLHKRELLALSRTDSLTGLLNHGAWKDQLEIEFERCKR 211

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
                +I   DID+FK IND +GH  GD V+  LS  L          GR GG+EF    
Sbjct: 212 QQTGAAIALIDIDHFKAINDTYGHVAGDIVLRQLSKMLKQNLRMADVAGRYGGDEFCVIL 271

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQA 243
                  AA     LR+    S +     P++ +++S G+ A        +  +  ADQA
Sbjct: 272 PDLPLFNAAQAMEALRERF--SFLVYEQNPALKVSLSIGLAALDPAHGDATRWLDDADQA 329

Query: 244 LYVAKKSGRNRVVCFSD 260
           LY AK  GRNRV+C SD
Sbjct: 330 LYEAKAGGRNRVICCSD 346


>gi|91975348|ref|YP_568007.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91681804|gb|ABE38106.1| diguanylate cyclase [Rhodopseudomonas palustris BisB5]
          Length = 494

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 18/204 (8%)

Query: 67  ENLSLVIISITISLLLGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           E + + +I + +++++   +   ++E      +  R+ +L+  D L+GL+N   F + + 
Sbjct: 285 EAIRISLILLGLAIIVAGFTVFFIREIDRRAEAERRLEELATTDSLTGLINRRKFDTLIE 344

Query: 124 SY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRL 175
                    N  ++++  D D+FK  ND +GH  GD+V+  ++  +   V        R 
Sbjct: 345 REWRRALRMNTPIALLIIDADHFKAFNDGYGHQAGDQVLVGIALCIGDSVQRAGDCAARF 404

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPI 233
           GGEEFA    G S   A  +A  +R  + +  +         +T+S G+A       +  
Sbjct: 405 GGEEFAVLLPGGSATAAQGVAETIRNKVAHWSVGQGD-----VTVSIGVASMTPAPGQHW 459

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
             +   AD+ALY AK  GRN  V 
Sbjct: 460 PVLFEAADKALYAAKDLGRNCCVV 483


>gi|264677578|ref|YP_003277484.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262208090|gb|ACY32188.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 406

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 110/230 (47%), Gaps = 10/230 (4%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE 92
           ++ SI   T  F     ++ +G +    L       L+LV I +  +LL  ++  +I   
Sbjct: 154 LWLSIAFTTYTFTRPGLIWLLGYSDLRSLPKSPYWLLTLVSI-LNFALLFSFVMTAIAA- 211

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFG 147
              + +++ +   +D L+ LLN  +F               ++++  DID+FK+IND++G
Sbjct: 212 -KETVDKLRRERDLDALTQLLNRRSFQEYAQQRLADIRLYPMAVLACDIDHFKRINDSWG 270

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+V+  +S  L         V R GGEEF       S ++A  +A  +++ +  + 
Sbjct: 271 HKRGDEVLQLVSTTLKDSVRENDLVARFGGEEFVLLLTEISLKDAEAIALRIQRDLRLNN 330

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             + SG ++  T+S GI+      P+   +  AD+ LY AK +GR+RV  
Sbjct: 331 EVLPSGYTL--TLSFGISALDSTTPLDQALREADRLLYEAKNAGRDRVHV 378


>gi|254449889|ref|ZP_05063326.1| sensor histidine kinase [Octadecabacter antarcticus 238]
 gi|198264295|gb|EDY88565.1| sensor histidine kinase [Octadecabacter antarcticus 238]
          Length = 212

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/165 (35%), Positives = 84/165 (50%), Gaps = 8/165 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
            +   S  D L+GL N   F+ S+           +   ++ FD D FK  NDN GH  G
Sbjct: 40  ELHDQSIRDPLTGLYNRRYFMDSMRRETVSFERGEKGFGLISFDADKFKTFNDNHGHEAG 99

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  L++++V V        R+G EEFA     +   EA   A  LR+ +E  ++  +
Sbjct: 100 DLVLRALAERMVAVMPDDAICARIGREEFAILVPKTDLDEALACAESLRRDVEAIEVRTA 159

Query: 212 SGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            GP   +TIS+G +A      P S ++ +AD+ALYVAK  GRNRV
Sbjct: 160 FGPLPRVTISSGVVAHDGGATPPSVLMKQADEALYVAKAGGRNRV 204


>gi|254254953|ref|ZP_04948270.1| hypothetical protein BDAG_04275 [Burkholderia dolosa AUO158]
 gi|124899598|gb|EAY71441.1| hypothetical protein BDAG_04275 [Burkholderia dolosa AUO158]
          Length = 669

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 95/192 (49%), Gaps = 19/192 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDID 137
           SG  + +  ++  R+++L+  D L+GL N  A    + +   +        + I+F D+D
Sbjct: 220 SGIDITDERLAERRLTELANTDVLTGLPNRHAISERIQTLISRENDGTRGQVGILFLDLD 279

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAA 193
            FK++ND++GH  GD+++  +S  +     +   + RLGG+EF      ++    E  A 
Sbjct: 280 NFKRVNDHYGHITGDRLLQDVSSIIAGCLPSGATLARLGGDEFLVLFEQATRALLEATAQ 339

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
           I+   LR  I    +       ++ + S GIA    H + + T+I  AD A+YVAK++G+
Sbjct: 340 IILERLRTPIHLGLM------EVYTSCSIGIAMHPQHGDSLETLIRSADTAMYVAKEAGK 393

Query: 253 NRVVCFSDIENN 264
           +    FS   N 
Sbjct: 394 HTYRVFSLDMNQ 405


>gi|119469199|ref|ZP_01612183.1| hypothetical protein ATW7_18925 [Alteromonadales bacterium TW-7]
 gi|119447451|gb|EAW28719.1| hypothetical protein ATW7_18925 [Alteromonadales bacterium TW-7]
          Length = 1003

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 81/186 (43%), Gaps = 9/186 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQI 142
           + L E   +   I + +  D L+ L N       L        NE   ++  DID+FK I
Sbjct: 557 TDLTEKIQANKTIWRQAHFDHLTDLPNRLELKKRLNKQFSNANNESFVVMLLDIDHFKDI 616

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRK 201
           ND  GH  GD ++  +S ++V       FV R+GG+EF        S +    +A+++ +
Sbjct: 617 NDTLGHHYGDNLLKVVSQRIVNSAKNAEFVARIGGDEFVIVFNHIKSTRHINQIASNILQ 676

Query: 202 IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            + ++         + I+ S GIA      E    ++  ADQA+Y AK +GRN    FS 
Sbjct: 677 SLSSAL--HVENEEVFISASMGIACAPEDGENTEQLLKAADQAMYKAKNNGRNGFEFFSR 734

Query: 261 IENNTC 266
                 
Sbjct: 735 DMREQA 740


>gi|221134190|ref|ZP_03560495.1| response regulator receiver modulated diguanylate cyclase
           [Glaciecola sp. HTCC2999]
          Length = 323

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 9/177 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           + K     YN++ + S  D L+G+ N   F   L         ++  + I +FD+D+FK 
Sbjct: 134 LRKSHSEQYNQLQKESLTDVLTGISNRRHFKDILKKEMVKAQRHDRAMCIAYFDLDHFKA 193

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH  GD+V+  +S  +          GRLGGEEF      +S  EA I +   R 
Sbjct: 194 INDGLGHDAGDEVLRKVSSAISETLRAEDSFGRLGGEEFCICMPDTSLNEALIPSERYRL 253

Query: 202 IIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +IE   I  ++ P I++T S G+ E       I++++  AD+ALY +K  GRN+V  
Sbjct: 254 MIEKLTIEYNNKP-INVTASFGVTEFKPFLHDINSLLAHADEALYKSKHQGRNQVTL 309


>gi|119776669|ref|YP_929409.1| GGDEF family protein [Shewanella amazonensis SB2B]
 gi|119769169|gb|ABM01740.1| diguanylate cyclase [Shewanella amazonensis SB2B]
          Length = 393

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 62/237 (26%), Positives = 103/237 (43%), Gaps = 13/237 (5%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LVENLSLVIISITISLLLGYIS- 86
           I   +   + +A V+F+  + L             I   E + ++   + +SL +  ++ 
Sbjct: 152 ITLLLVMPLILAAVLFLVRLGLIMTQEDAEARFISIHTAEAVPMLWFYLVLSLSINVVAM 211

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYF 139
           G+ L  L     +I  L+  D L+GL N  +    L   N       E  +IV  D+D+F
Sbjct: 212 GNALTRLV---QKIRVLADRDMLTGLWNRRSAELRLRELNLRWQKGREPFAIVLLDLDHF 268

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND  GH  GD  +   +  L         + R GGEEF     G   ++A ++A  L
Sbjct: 269 KKINDKLGHQAGDAALRQAALILSHSLRETDMLCRFGGEEFLVILSGVGIKQAHLVAEKL 328

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R+ +  + +       + ++ S G A       +S +I  AD A+Y AK  GRN V+
Sbjct: 329 RESLAATALRWDDD-EVVLSASFGCAAMVDGMSVSQLISAADHAMYQAKAGGRNCVM 384


>gi|307941581|ref|ZP_07656936.1| response regulator [Roseibium sp. TrichSKD4]
 gi|307775189|gb|EFO34395.1| response regulator [Roseibium sp. TrichSKD4]
          Length = 303

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 7/171 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--KLSIVFFDIDYFKQINDNFGH 148
           +++  +   +   +  D L+ L N   F   +    +  +  ++  DID+FK +ND +GH
Sbjct: 120 QKMLSAQQELRFYATRDPLTKLYNRRCFFEEVKKLPQDGEACLLILDIDHFKSVNDTYGH 179

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD  +   +  L+        V RLGGEEFA     ++E      A   R  IE   +
Sbjct: 180 QAGDMALVESAKLLLD--QNVGIVSRLGGEEFAIYLHDTTESVGKRAAESFRACIEAGSL 237

Query: 209 NISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVC 257
               G +I  T+S G+A +       +  +   AD+ALY AKKSGRNRV  
Sbjct: 238 EF-QGKTIRFTVSIGLAFKPSGVSFNVDELYGSADEALYEAKKSGRNRVCI 287


>gi|260773583|ref|ZP_05882499.1| sensory box/GGDEF family protein [Vibrio metschnikovii CIP 69.14]
 gi|260612722|gb|EEX37925.1| sensory box/GGDEF family protein [Vibrio metschnikovii CIP 69.14]
          Length = 613

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 104/231 (45%), Gaps = 19/231 (8%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI-LKELFIS 96
           FI +V+       ++ G   F   +  ++  L  +   I    +  YI+  + + E    
Sbjct: 387 FILSVLERITSEHYWQGEVEFATAQGDMLTTLMRIQGIIESGRVSYYITSIVDITERKQL 446

Query: 97  YNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNE--KLSIVFFDIDYFKQINDNFG 147
            N++ +LS  D L+ L N   F          + +      + +V  DID+FK++ND  G
Sbjct: 447 ENKLRELSEKDSLTQLWNRRKFELELTHQVERIQAEGNAYPVCLVLLDIDFFKRVNDEQG 506

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+VI  ++  L        F+ R+GGEEFA     +  ++A  +   LR  +E   
Sbjct: 507 HDQGDRVIIDVARLLTQHLRRYDFIARIGGEEFAVIMPSTRIEQAQQIIERLRGAVEAE- 565

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 P + +T+SAGI +       S     AD ALY +KKSGRN+V  F
Sbjct: 566 ------PHLSVTVSAGITDLTLDATRS--YKCADIALYESKKSGRNQVSTF 608


>gi|117928641|ref|YP_873192.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Acidothermus
           cellulolyticus 11B]
 gi|117649104|gb|ABK53206.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Acidothermus
           cellulolyticus 11B]
          Length = 746

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 10/168 (5%)

Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  D L+GL + + F+  L             L ++F D+D FK +ND  GH  GD ++ 
Sbjct: 310 AFHDSLTGLASRALFLDRLNLGLAQAARSGTNLCLLFIDLDRFKIVNDTLGHAAGDVLLV 369

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++++L           R GG+EF A    +  + AAI+A  +   +   Q        +
Sbjct: 370 EIANRLRSCLRASDTAARYGGDEFVALLHDTDVRGAAIVAARIIDAVR--QPLRVGEMDV 427

Query: 217 HITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            +  S GIA           ++  AD A+Y AK++GR R   +    +
Sbjct: 428 TVDASIGIACSVAGGTAADDLLRSADVAMYRAKRAGRGRYAIYEPSMH 475


>gi|332994223|gb|AEF04278.1| GGDEF domain-containing protein [Alteromonas sp. SN2]
          Length = 517

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 14/193 (7%)

Query: 77  TISLLLGYISGSI--LKELFISYNR-ISQ---LSRIDCLSGLLNHSAFISSLGSY----- 125
           ++  LLG +   I  L++  ++Y + +++   LS+ D L+ L N  A+   L        
Sbjct: 321 SLMGLLGSMQSRIEQLQKQTLTYKKKLAEQMMLSQTDPLTRLPNRQAYNEKLSKAVQSWQ 380

Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
              + L++   DID+FK IND FGH  GDK +  +   L        F+ R GGEEF   
Sbjct: 381 DNGDDLAVAVIDIDHFKSINDRFGHAAGDKTLQVVGKNLKQQLTENTFMARWGGEEFVLL 440

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
             G ++Q+   L   +R  + +          + IT S G +     +    +  RAD  
Sbjct: 441 LPGMNKQKVISLLETMRTKLASLPFKFKQ-EKVTITASFGASFFNKGDTPDAVFERADNL 499

Query: 244 LYVAKKSGRNRVV 256
           LY AK SGRNRV+
Sbjct: 500 LYQAKNSGRNRVI 512


>gi|238895023|ref|YP_002919757.1| hypothetical protein KP1_3053 [Klebsiella pneumoniae NTUH-K2044]
 gi|238547339|dbj|BAH63690.1| hypothetical protein KP1_3053 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 489

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 117/258 (45%), Gaps = 17/258 (6%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE 67
            +++W      L S S    + +FS  F  F +  +F     L   G       +    E
Sbjct: 237 LMAVWFITLILLISLSKLRNIFWFSGAF--FCSAYLFTLFQLLSTAGELDQTWYQARFFE 294

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
            L  + + I + L+  +I   + +E    Y    Q S  D L+ L N S F  +L     
Sbjct: 295 TLCTLFL-ILVLLVDVFI---LYRESNHKYVHSYQNSIRDPLTRLYNRSFFYDTLNQQLA 350

Query: 126 ----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                  LS++  D+D+FK+IND++GH  GDKVI F +  L           R+GGEEFA
Sbjct: 351 KVNAQHPLSVLISDLDHFKRINDSYGHVAGDKVIQFAASVLESHSRVDDAAARIGGEEFA 410

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRA 240
              + + E+EA  +A  +R  +   + ++       +TIS G+     +       + RA
Sbjct: 411 LLLVNTGEKEAQAIAERIRLAVSAGESHLPE----RMTISMGVYTTYDNSVTAEACVQRA 466

Query: 241 DQALYVAKKSGRNRVVCF 258
           D+A+Y AK +GRN+V+ +
Sbjct: 467 DEAMYEAKNNGRNQVIVW 484


>gi|225872136|ref|YP_002753591.1| GGDEF domain protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793220|gb|ACO33310.1| GGDEF domain protein [Acidobacterium capsulatum ATCC 51196]
          Length = 532

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 73/255 (28%), Positives = 108/255 (42%), Gaps = 31/255 (12%)

Query: 32  SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN-LSLVIISITISLLLGYISGSIL 90
           S+  S F   ++    + +  + L     +  ILV N     +IS+ I L    I  ++L
Sbjct: 255 SVVISRFQQVLVHSMPVLITAVVLV----MGTILVRNYFEAGLISVLIGLAGYSIRNTLL 310

Query: 91  ---------------KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEK 128
                            L  +  R  +LS ID L+ + N   F                 
Sbjct: 311 EMRYVDTQTRLSQSETALQQAMQRFQELSYIDPLTKVANRRQFEETMTTEWYRAMRRTAP 370

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGS 187
           LS++  D+D+FK +ND +GH  GD  +   +  L          + R GGEEFAA     
Sbjct: 371 LSLLMLDLDHFKLLNDTYGHLRGDDCLMISAQTLSSRLKRAGELLARYGGEEFAAVLPDV 430

Query: 188 SEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIA--ERCHKEPISTIIYRADQAL 244
             ++A  +A  LR  IE+  I  S  P+   +TIS G+A         I  ++  ADQAL
Sbjct: 431 KLEDAMQVAETLRSAIESMDIANSQSPNGGRLTISVGVAVCYPTANLSIEQLVDTADQAL 490

Query: 245 YVAKKSGRNRVVCFS 259
           Y AK++GRNRV   S
Sbjct: 491 YAAKQAGRNRVHSAS 505


>gi|204931134|ref|ZP_03221928.1| bacterial signalling protein N repeat [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204319901|gb|EDZ05107.1| bacterial signalling protein N repeat [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 699

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 115/273 (42%), Gaps = 21/273 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIA--------NIFLFYIGLTPFYGL 61
           ++WL      E           ++   I IA + +          N  + + G+   +  
Sbjct: 156 ALWLTFRLRHEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLA 215

Query: 62  EYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
             + V  L+++ I++ +SL    +      +   L  +   ++QL+  D L+ L N    
Sbjct: 216 VLVSVVALTILGITLLVSLFDARLQARTALLASSLAQANQELAQLALHDTLTRLPNRVLL 275

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L          +   +++F D+D FK +ND +GH +GDK++  ++ +L         
Sbjct: 276 EDRLEQAISKANRESTSFALLFMDLDGFKAVNDAYGHDIGDKLLVAVTHRLNQPLSGQFT 335

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF   A  S+  EAA LA+ L   I+           + +T+S GIA      
Sbjct: 336 LARIGGDEFVLLAEVSAPDEAASLASALVHSIDA--PFTIDPYELVVTLSVGIALYPLDG 393

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +    +++ AD A+Y  K +GRN    F    N
Sbjct: 394 KNERELMFNADAAMYHTKHTGRNGYHFFQPSMN 426


>gi|148257974|ref|YP_001242559.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1]
 gi|146410147|gb|ABQ38653.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1]
          Length = 411

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 106/247 (42%), Gaps = 15/247 (6%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           P       +   S+ I  V F A     +IG    +           L++I +++SL  G
Sbjct: 145 PINPGARLAGLLSVLIIAV-FAARTIGAFIGADFNFSHSTSGQAAAVLLLIFLSMSLNFG 203

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
           +    +L  +    N ++ L+ +D L+G+ N    +  L           +  +++  D+
Sbjct: 204 F----LLMAVDRLRNEVADLALLDDLTGVANRRHLMQRLGEECARAERSGKPFALLVIDL 259

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK INDN GH  GD  +   +            + R GG+EF      SS +E A++A
Sbjct: 260 DGFKLINDNHGHAAGDACLQHFTLMAQTRLRPGDMLARTGGDEFCILLPSSSLREGAMIA 319

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNR 254
             + ++  +      +G  + I +S G+AE           ++ RADQALY AKK G+NR
Sbjct: 320 RRILQVCRDDA-EACAGADVPIEVSIGVAEWTRDLGAFPDRVMARADQALYAAKKDGKNR 378

Query: 255 VVCFSDI 261
              + + 
Sbjct: 379 YAVYQNE 385


>gi|184157424|ref|YP_001845763.1| GGDEF domain-containing protein [Acinetobacter baumannii ACICU]
 gi|213156113|ref|YP_002318533.1| hypothetical protein AB57_1151 [Acinetobacter baumannii AB0057]
 gi|215484151|ref|YP_002326376.1| WspR [Acinetobacter baumannii AB307-0294]
 gi|239503319|ref|ZP_04662629.1| WspR [Acinetobacter baumannii AB900]
 gi|260557373|ref|ZP_05829588.1| WspR [Acinetobacter baumannii ATCC 19606]
 gi|301347761|ref|ZP_07228502.1| WspR [Acinetobacter baumannii AB056]
 gi|301512248|ref|ZP_07237485.1| WspR [Acinetobacter baumannii AB058]
 gi|301596672|ref|ZP_07241680.1| WspR [Acinetobacter baumannii AB059]
 gi|332854540|ref|ZP_08435418.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332870165|ref|ZP_08439077.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
 gi|332875103|ref|ZP_08442939.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6014059]
 gi|183209018|gb|ACC56416.1| GGDEF domain protein [Acinetobacter baumannii ACICU]
 gi|213055273|gb|ACJ40175.1| hypothetical protein AB57_1151 [Acinetobacter baumannii AB0057]
 gi|213987993|gb|ACJ58292.1| WspR [Acinetobacter baumannii AB307-0294]
 gi|260408999|gb|EEX02302.1| WspR [Acinetobacter baumannii ATCC 19606]
 gi|322507304|gb|ADX02758.1| GGDEF domain protein [Acinetobacter baumannii 1656-2]
 gi|323517323|gb|ADX91704.1| GGDEF domain protein [Acinetobacter baumannii TCDC-AB0715]
 gi|332727949|gb|EGJ59344.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332732432|gb|EGJ63688.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
 gi|332736720|gb|EGJ67711.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6014059]
          Length = 420

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 11/239 (4%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           M+   +  +  +   + + ++   YI L        IL  ++S ++IS   SL L     
Sbjct: 171 MLCVGLLAAFLVFAFLILLDVNCDYIALGRALFGSCILGFSISSMLISRERSLFLNNQLA 230

Query: 88  SILKE-LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139
            I ++ L I  + +  LS+ D L+ + N   F                 L+++F DID+F
Sbjct: 231 EINEQILRIEASELLHLSQQDALTQISNRRTFDEMFDFFYYRANQEKRPLAVLFIDIDFF 290

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND +GH +GDKVI+ ++  +        FV R GGEEF      +  Q A  +A ++
Sbjct: 291 KNYNDFYGHQMGDKVISSIAAAIKNSIRHVDFVARYGGEEFVVLLPETPAQGAYSVAANI 350

Query: 200 RKIIENSQINISSG-PSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRV 255
            K IE   I  ++   S ++TIS G         +    +I+ ADQALY AK+ GRN++
Sbjct: 351 YKAIERQAIPHAASLVSKYVTISLGFTVYTGGLKMGQDRLIHAADQALYRAKQLGRNQI 409


>gi|218528940|ref|YP_002419756.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           chloromethanicum CM4]
 gi|218521243|gb|ACK81828.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           chloromethanicum CM4]
          Length = 714

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 10/181 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQIND 144
            E + + NRI+ ++R D ++ L N       +             +++  D+D FKQ+ND
Sbjct: 273 TERWNAENRIAHMARHDAVTDLPNRVLLRERIEGAITRARRETGFAVLCLDLDNFKQVND 332

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
             GH VGD+++  ++ +L         V RLGG+EFA      ++  +AA LA  +  ++
Sbjct: 333 TLGHAVGDELLRAVAHRLRACLREVDTVARLGGDEFAIIQASVATPADAATLAQRILDVV 392

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             S     +  S+ + +S GIA           ++  AD ALY AK  GR     F    
Sbjct: 393 --SAPYALTHHSVIVGVSIGIALAPGDGLEPERLMQCADVALYRAKDDGRGVFRFFEAQM 450

Query: 263 N 263
           +
Sbjct: 451 D 451


>gi|146311833|ref|YP_001176907.1| RNase II stability modulator [Enterobacter sp. 638]
 gi|145318709|gb|ABP60856.1| diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638]
          Length = 663

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 8/185 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +          ++ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRVLANTDTITGLPNRNAIHELISDSISQRGETQVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  ++  ++        + RLGG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHMFGDQLLQSVALAILSCLDEGQVLARLGGDEFIVLATDTSQSTLEAMASRIL 338

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +   Q        I+   S GI+    H     +II  AD A+Y AK+SGR +   FS
Sbjct: 339 TRLR--QPFRIGLIEIYTGCSLGISLAPQHGTDRESIIRNADTAMYTAKESGRGKFCVFS 396

Query: 260 DIENN 264
              N 
Sbjct: 397 PEMNQ 401


>gi|83590315|ref|YP_430324.1| diguanylate cyclase [Moorella thermoacetica ATCC 39073]
 gi|83573229|gb|ABC19781.1| diguanylate cyclase (GGDEF domain) [Moorella thermoacetica ATCC
           39073]
          Length = 439

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/189 (30%), Positives = 88/189 (46%), Gaps = 11/189 (5%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132
           ++ GY + +I  E    Y  +   + ID  +GL N+          I+    Y    +I 
Sbjct: 240 IIAGYAALAI--ERARLYEAMKFQATIDAKTGLYNYQHMMHLLEKEIARARRYQRTFTIA 297

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID FK  ND  GH  GDK +  ++  +           R GGEEF      +S  EA
Sbjct: 298 MLDIDDFKIYNDTHGHHQGDKALQKIAALIKANIREVDIAARYGGEEFVIIMPETSALEA 357

Query: 193 AILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKS 250
           +++A  +R+ I N+ I N+  GP   +T+S G+    H    +  +I  AD ALY AK+ 
Sbjct: 358 SVVAERVRRAIMNAGIANVGCGPDRLLTVSIGLGTYPHDATTAGKLIDAADSALYEAKRW 417

Query: 251 GRNRVVCFS 259
           G+N V  +S
Sbjct: 418 GKNVVRVYS 426


>gi|319784352|ref|YP_004143828.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170240|gb|ADV13778.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 262

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 98/228 (42%), Gaps = 10/228 (4%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
           + T  FIA  F       P+   E +    ++ +++ + +     +     +++L I+  
Sbjct: 19  VGTAFFIAVAFFVDSFNFPYLSPEAVWRAQMTDLMLPLVLGGSFLFFLMWKIRQLAIAQR 78

Query: 99  RISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
            +S ++  D L+ +LN  AF          +         +++  D D+FK IND  GH 
Sbjct: 79  DLSVIAATDSLTAVLNRGAFSMLVEAYLEQTRKQEQTRSGALLIIDADHFKSINDRLGHD 138

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+ +  ++  +         VGR+GGEEF     G    ++ ++A  +R+ I   + +
Sbjct: 139 CGDQALKLIAQAIKGQLRGSDIVGRIGGEEFGVFLPGVDPSQSWVVAESIRRRIREMEFS 198

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              G    +++S G            I   AD+ LY AK +GR++V  
Sbjct: 199 -PGGRPCPLSVSIGGTSFTGPITYEEIFSAADRRLYTAKSNGRDQVSF 245


>gi|294497815|ref|YP_003561515.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Bacillus megaterium QM B1551]
 gi|294347752|gb|ADE68081.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Bacillus
           megaterium QM B1551]
          Length = 657

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 12/188 (6%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSI 131
           +  Y+S  + + E     N++   +  D L+GL N +  +  L    EK         ++
Sbjct: 470 ITHYVSIHNDITEQKALENKLHFEATHDSLTGLPNRAMLLKELNKVIEKGQRKSDEFFAL 529

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +F D D FKQIND +GH +GD+ +   + +L         + RLGG+EF      ++ +E
Sbjct: 530 LFLDCDNFKQINDEYGHHIGDEFLKAYTKRLKSCVRKGDRIYRLGGDEFIIILNVTNGRE 589

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
              +A  +   +   Q     G  +  T + G++      E  + ++  AD ALY  K+ 
Sbjct: 590 IEQIARRIH--VSLQQSWNVRGYCLRTTTTIGVSIYPEDGESAALLLKNADDALYKGKRE 647

Query: 251 GRNRVVCF 258
           G+N  + +
Sbjct: 648 GKNNYILY 655


>gi|256059197|ref|ZP_05449403.1| response regulator PleD [Brucella neotomae 5K33]
 gi|261323146|ref|ZP_05962343.1| response regulator receiver modulated diguanylate cyclase [Brucella
           neotomae 5K33]
 gi|261299126|gb|EEY02623.1| response regulator receiver modulated diguanylate cyclase [Brucella
           neotomae 5K33]
          Length = 461

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 81/174 (46%), Gaps = 9/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L  S  R    S  D L+GL N           ++      + LSI+  D+D+FKQ+N+ 
Sbjct: 285 LRQSMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQ 344

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD V+   S +L         + R GGEEF      +  Q A  +A  +R I+  
Sbjct: 345 YGHGAGDHVLREFSGRLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRDIVAE 404

Query: 206 SQINISSGP-SIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +  G     +T+S G+ A R   + +  +  RA  AL  AK+SGRNR+V 
Sbjct: 405 APFVLDDGKRRASLTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIVL 458


>gi|237654071|ref|YP_002890385.1| diguanylate cyclase [Thauera sp. MZ1T]
 gi|237625318|gb|ACR02008.1| diguanylate cyclase [Thauera sp. MZ1T]
          Length = 444

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 9/181 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
             ++   +  +  +++  +R D L+GL N  AF   +           +++++ + D+D+
Sbjct: 252 QRTLQARIDEATVQLAWQARHDPLTGLANRRAFEERIEQAVRAHRRSGDQITLFYIDLDH 311

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND+ GH  GD++++ L   L     +   V R+GG+EFAA   G   ++A  +A  
Sbjct: 312 FKVVNDSCGHAAGDRLLSELGALLKGRLRSEDEVFRIGGDEFAAILRGCGREDARRIAEG 371

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           L   I       S G +  +  S G+A      +    ++  ADQA Y AK  GR  VV 
Sbjct: 372 LCAAIAAHAFE-SDGRAFRVGASIGLARMDPDLQEADALMIAADQACYAAKHGGRGHVVE 430

Query: 258 F 258
           +
Sbjct: 431 Y 431


>gi|254521278|ref|ZP_05133333.1| diguanylate cyclase [Stenotrophomonas sp. SKA14]
 gi|219718869|gb|EED37394.1| diguanylate cyclase [Stenotrophomonas sp. SKA14]
          Length = 543

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/221 (29%), Positives = 107/221 (48%), Gaps = 10/221 (4%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVIISIT-ISLLLGYISGSILKELFISYNRISQ 102
             A   +  + +      E++L   +  + +++T + ++  Y     L  L    + + Q
Sbjct: 312 LAALAPMLVLIIADASAAEWLLEYRVEALQLAVTWLLMMAAYAMNQRLGRLRQQRDELRQ 371

Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N  A +  L  +          L I F DID FK IND  GH VGD+V+
Sbjct: 372 LAETDGLTGLPNRRAGLQQLARHLAQVDRERGPLVIGFLDIDLFKDINDRHGHAVGDQVL 431

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L     +   V R+GGEEF     G   + A+   + LR+ I  +   +   P 
Sbjct: 432 VAVARALRAAVRSQDEVVRMGGEEFLLLMPGMPREAASARLDRLRQRITEAGQALQV-PG 490

Query: 216 IHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
           + +T S G+A+    E  ++ ++ RAD A+YVAK++GRNRV
Sbjct: 491 LEVTASIGLAQWRPGEDDMAGLLRRADHAMYVAKRAGRNRV 531


>gi|58581953|ref|YP_200969.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58426547|gb|AAW75584.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 297

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 11/193 (5%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SY 125
           + S+T++          L  L +    + Q S  D L+GL N      +L          
Sbjct: 98  LASLTVAEAAAEQLSLALHNLRL-RETLRQQSIRDLLTGLYNRRYLEETLNHELARCTRR 156

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              LS++  D+D+FKQ ND  GH  GD+V++ + + L+          R GGEE      
Sbjct: 157 GLPLSVLMLDVDHFKQFNDLHGHSGGDRVLSAIGELLLSQTRGEDICCRYGGEELTIILP 216

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERC-HKEPISTIIYRADQA 243
                 A ++A  LR  IE  Q+ + +G S+  +T S G A    H   ++ ++ RA +A
Sbjct: 217 EVDLPTACMMAEKLRTGIEALQV-MGNGVSLPKVTASFGAANFPDHAGTVAQLLRRAHEA 275

Query: 244 LYVAKKSGRNRVV 256
           LY AK+ GRN+VV
Sbjct: 276 LYRAKQVGRNQVV 288


>gi|114564545|ref|YP_752059.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
 gi|114335838|gb|ABI73220.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
          Length = 829

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/215 (26%), Positives = 100/215 (46%), Gaps = 12/215 (5%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G     VE+ +  I +    ++   +    + E      ++S L+  D L+ L N     
Sbjct: 349 GGHVFYVEDSAAPIRNENGEMIGAIMVFHDVSEAMAMAMKMSHLANHDQLTDLPNRILLQ 408

Query: 120 SSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L        SY  K + +  DID+FK +ND+ GH  GD++I  ++ +L  +      +
Sbjct: 409 DRLSVACSTARSYGTKAAALLIDIDHFKFLNDSLGHQYGDELICMMARRLRSLIPASYTL 468

Query: 173 GRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
            RLGG+EF      +   EA + LA+ L + +   +  +      +++IS G++   +  
Sbjct: 469 ARLGGDEFVILMSETRSVEASSQLASTLVEAM--HEPFVLDNQKFNVSISIGVSVFPNDA 526

Query: 232 -PISTIIYRADQALYVAKKSGRNRVVCFS-DIENN 264
                ++  AD A+Y AK+ GRNR   FS D+E++
Sbjct: 527 VDAEELMRHADVAMYRAKQEGRNRFCFFSHDLESS 561


>gi|325282595|ref|YP_004255136.1| diguanylate cyclase/phosphodiesterase [Deinococcus proteolyticus
           MRP]
 gi|324314404|gb|ADY25519.1| diguanylate cyclase/phosphodiesterase [Deinococcus proteolyticus
           MRP]
          Length = 866

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 10/182 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQ 141
            ++ + L  +   ++  +  D L+GLLN  A    L +       + ++++F D+D+FKQ
Sbjct: 406 AAMNETLQAAQAELAYRATHDALTGLLNRPALERQLQAVCRDTPPQGMAVLFIDLDHFKQ 465

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GHPVGD+++  ++ +L         V R GG+EF       S Q +A      + 
Sbjct: 466 INDTLGHPVGDQLLQEVAGRLRRSVQPGDEVARQGGDEFTVLLR--SVQNSAQAEQAAQH 523

Query: 202 IIENSQIN-ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++E   I  I+ G  + I+ S GIA    H   ++T+   AD ALY AK+  R     + 
Sbjct: 524 LLEQLSIPVIAGGHPLFISASIGIALFPQHGTDVTTLQKHADLALYRAKQE-RGCYRTYQ 582

Query: 260 DI 261
             
Sbjct: 583 PA 584


>gi|302878001|ref|YP_003846565.1| diguanylate cyclase with PAS/PAC and GAF sensors [Gallionella
           capsiferriformans ES-2]
 gi|302580790|gb|ADL54801.1| diguanylate cyclase with PAS/PAC and GAF sensors [Gallionella
           capsiferriformans ES-2]
          Length = 484

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 19/196 (9%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYF 139
            SI  E  +   ++ QL+  D L+ L N       L              +++F D+D F
Sbjct: 289 ASIAIERKLLEEKVRQLAFYDTLTNLPNRRLLKERLNQAMSVSKRTHCYCALMFIDLDNF 348

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ------EAA 193
           K IND  GH +GD ++   + +L         V R GG+EF                +A 
Sbjct: 349 KPINDMHGHGIGDLLLIDAAKRLKSCVREMDTVARFGGDEFVVLLSELDVDQAISTSQAQ 408

Query: 194 ILANDLRKIIE-----NSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVA 247
            +A  +R  +       + I  ++      T S G+            I+ +AD A+Y A
Sbjct: 409 RVAQKIRAALSVPYVLPTDILPAATIEHRCTASIGVTVFLNQGINQDDILKQADAAMYEA 468

Query: 248 KKSGRNRVVCFSDIEN 263
           K++G N +    +++N
Sbjct: 469 KEAGGNSIRFHDNLKN 484


>gi|224370431|ref|YP_002604595.1| ABC-type nitrate/sulfonate/bicarbonate transport system,
           periplasmic substrate binding component
           [Desulfobacterium autotrophicum HRM2]
 gi|223693148|gb|ACN16431.1| ABC-type nitrate/sulfonate/bicarbonate transport system,
           periplasmic substrate binding component
           [Desulfobacterium autotrophicum HRM2]
          Length = 404

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 74/237 (31%), Positives = 104/237 (43%), Gaps = 18/237 (7%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS--GSILKE 92
           F + +A  I I    +  + +   Y    IL   L L ++ +    L G      ++  E
Sbjct: 134 FWLAVAFDIAILGPGIVAMAVGQIYSSLMIL---LVLYLVYMIFMALRGNREYWNALENE 190

Query: 93  --LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
             L      I  L + D L+GL N   F  +              +SIV  DIDYFK++N
Sbjct: 191 FLLEEKTRAIELLGQRDGLTGLYNRRYFDDAFEYEWNRAIRNRTAISIVMCDIDYFKRVN 250

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD  +   +D L   V      V R GGEEF       S +    LA  +R++
Sbjct: 251 DAFGHLAGDAYLRLTADVLKQVVRRETDIVARYGGEEFIFLIPDDSLENTVGLAERIRQM 310

Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
           +EN+ +    G  I  T+S G+A    +  E   TI+  AD A+Y AK  GRNRVV 
Sbjct: 311 MENTALTF-DGQIIRATVSLGVARLSPRPFEKKETIVSNADNAMYQAKSRGRNRVVA 366


>gi|213023536|ref|ZP_03337983.1| hypothetical protein Salmonelentericaenterica_13662 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 535

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 115/273 (42%), Gaps = 21/273 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIA--------NIFLFYIGLTPFYGL 61
           ++WL      E           ++   I IA + +          N  + + G+   +  
Sbjct: 155 ALWLTFRLRNEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLA 214

Query: 62  EYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
             + V  L+++ I++ +SL    +      +   L  +   ++QL+  D L+ L N    
Sbjct: 215 VLVSVVALTILGITLLVSLFDARLQARTALLASSLAQANQELAQLALHDTLTRLPNRVLL 274

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L          +   +++F D+D FK +ND +GH +GDK++  ++ +L         
Sbjct: 275 EDRLEQAISKANRESTSFALLFMDLDGFKAVNDAYGHDIGDKLLVAVTHRLNQPLSGQFT 334

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF   A  S+  EAA LA+ L   I+           + +T+S GIA      
Sbjct: 335 LARIGGDEFVLLAEVSAPDEAASLASALVHSIDA--PFTIDPYELVVTLSVGIALYPLDG 392

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +    +++ AD A+Y  K +GRN    F    N
Sbjct: 393 KNERELMFNADAAMYHTKHTGRNGYHFFQPSMN 425


>gi|253689988|ref|YP_003019178.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251756566|gb|ACT14642.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 526

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 67/253 (26%), Positives = 108/253 (42%), Gaps = 18/253 (7%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL 80
           +  P   ++   +  ++ +A +       L  +   P + L     +  +  +     ++
Sbjct: 274 TLKPLDGLMLNVLRHTLPLALLTIFCVWLLARLIAQPLWLLARSANKMDATDVSDDIRNI 333

Query: 81  LLGYISGSILKE--------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKL 129
              Y   S LK+        L     ++   +  D ++ LLN     S L  +    +  
Sbjct: 334 HSWYFEASQLKQAMLLGIDLLQRKIGKLRSEAHSDPMTDLLNRRGLDSVLRYWQMGQKSF 393

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID FK+IND +GH +GD VI +LS  +         + R GGEEF      +S 
Sbjct: 394 AVIALDIDRFKRINDTYGHDIGDNVIRYLSQLIRTSSRDSDILCRSGGEEFLILLPETSL 453

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAER---CHKEPISTIIYRADQALYV 246
             A  +A  LR  +E S I +      +ITIS G+A      +   I      AD+ALY 
Sbjct: 454 DVALSIAERLRLRMEESTIPVVG----NITISLGVALWEPGANDTSIERTFKLADEALYQ 509

Query: 247 AKKSGRNRVVCFS 259
           AK+ GRNRVV  S
Sbjct: 510 AKQEGRNRVVSAS 522


>gi|240139060|ref|YP_002963535.1| diguanylate cyclase precursor with GGDEF motif; putative membrane
           protein [Methylobacterium extorquens AM1]
 gi|240009032|gb|ACS40258.1| diguanylate cyclase precursor with GGDEF motif; putative membrane
           protein [Methylobacterium extorquens AM1]
          Length = 405

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/255 (25%), Positives = 109/255 (42%), Gaps = 16/255 (6%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           L+IW   ++ L S  P   ++            + F   I       +P++ +       
Sbjct: 136 LTIWQGRDEPLVSRYPALVLLATYAGLYWIRLPLAFTMPIPASVAIASPWFAI------- 188

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
             L       S+ + ++  ++ KE      R++  +  D L+G+ N  A ++    +   
Sbjct: 189 --LCFAGTLFSVAIAFVFMALTKERAEREQRLA--AETDSLTGIANRRALVAGAERHLAV 244

Query: 129 LSIVF--FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
                  FD+D+FK +ND +GH VGD V+A        +       GR+GGEEFA     
Sbjct: 245 APAALLLFDLDHFKAVNDRYGHSVGDAVLAAFCHVADPLLPPGAVFGRMGGEEFACLLPR 304

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALY 245
             E+ A  +A D+R  I   +      P + I +S G+A        +  ++ RAD ALY
Sbjct: 305 LDERAAMRVAEDVRAAIA--RFAHPDYPELAIRVSVGVAAESQIGGSLDYLLRRADDALY 362

Query: 246 VAKKSGRNRVVCFSD 260
            AK +GR+RVV   +
Sbjct: 363 QAKHAGRDRVVAAGE 377


>gi|254225352|ref|ZP_04918964.1| GGDEF family protein [Vibrio cholerae V51]
 gi|125622193|gb|EAZ50515.1| GGDEF family protein [Vibrio cholerae V51]
          Length = 976

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 22/228 (9%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI------------- 95
           F +   + P +     ++    ++ +++ +SL++  I     +EL++             
Sbjct: 739 FSYVFIIEPHWWQRKEVIVMAGMLFLALAVSLVMWRIRILKRRELYLVEQVALQTQKLRL 798

Query: 96  SYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
              +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIND + H
Sbjct: 799 QAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIALLDIDHFKQINDRYSH 858

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+ I  +S +L+   G    V R GGEEF    +G   ++A      LR  IE   +
Sbjct: 859 IIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVG-DPKQAWGYFEKLRCKIEQVDL 917

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  + P +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 918 SAVA-PGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 964


>gi|16762146|ref|NP_457763.1| hypothetical protein STY3568 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143635|ref|NP_806977.1| hypothetical protein t3302 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213649890|ref|ZP_03379943.1| hypothetical protein SentesTy_22991 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|25513223|pir||AH0913 probable exported protein STY3568 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16504449|emb|CAD07902.1| putative exported protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139270|gb|AAO70837.1| putative exported protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 536

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 115/273 (42%), Gaps = 21/273 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIA--------NIFLFYIGLTPFYGL 61
           ++WL      E           ++   I IA + +          N  + + G+   +  
Sbjct: 156 ALWLTFRLRNEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLA 215

Query: 62  EYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
             + V  L+++ I++ +SL    +      +   L  +   ++QL+  D L+ L N    
Sbjct: 216 VLVSVVALTILGITLLVSLFDARLQARTALLASSLAQANQELAQLALHDTLTRLPNRVLL 275

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L          +   +++F D+D FK +ND +GH +GDK++  ++ +L         
Sbjct: 276 EDRLEQAISKANRESTSFALLFMDLDGFKAVNDAYGHDIGDKLLVAVTHRLNQPLSGQFT 335

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF   A  S+  EAA LA+ L   I+           + +T+S GIA      
Sbjct: 336 LARIGGDEFVLLAEVSAPDEAASLASALVHSIDA--PFTIDPYELVVTLSVGIALYPLDG 393

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +    +++ AD A+Y  K +GRN    F    N
Sbjct: 394 KNERELMFNADAAMYHTKHTGRNGYHFFQPSMN 426


>gi|238784612|ref|ZP_04628618.1| Sensory box-containing diguanylate cyclase [Yersinia bercovieri
           ATCC 43970]
 gi|238714481|gb|EEQ06487.1| Sensory box-containing diguanylate cyclase [Yersinia bercovieri
           ATCC 43970]
          Length = 853

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/188 (30%), Positives = 84/188 (44%), Gaps = 11/188 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           + S +     +  RI  LS  D L+GL N           + +L +    L I+  D+D 
Sbjct: 411 TASDITREIEAQERIQHLSLHDALTGLPNRLRMKEFLENKLRNLAASPHPLVILNVDLDK 470

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK +ND FGH  GDKV+  +S++L         V R GG+EF     G SS +E   L  
Sbjct: 471 FKPVNDTFGHIAGDKVLHQVSERLRSCLRDQDLVARQGGDEFILIITGLSSIKEIEQLCA 530

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            +   IE+    + +   I+I+ S GIA           ++  AD A+Y AK S  N   
Sbjct: 531 RVITHIES--PYVINDQDIYISASIGIALAPQDSMQAEELLRFADIAMYEAKNSDLNHWS 588

Query: 257 CFSDIENN 264
            +S   N+
Sbjct: 589 FYSSEMND 596


>gi|229505065|ref|ZP_04394575.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229511265|ref|ZP_04400744.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229518383|ref|ZP_04407827.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229608069|ref|YP_002878717.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|229345098|gb|EEO10072.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229351230|gb|EEO16171.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229357288|gb|EEO22205.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229370724|gb|ACQ61147.1| GGDEF family protein [Vibrio cholerae MJ-1236]
          Length = 691

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 22/228 (9%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI------------- 95
           F +   + P +     ++    ++ +++ +SL++  I     +EL++             
Sbjct: 454 FSYVFIIEPHWWQRKEVIVMAGMLFLALAVSLVMWRIRILKRRELYLVEQVALQTQKLRL 513

Query: 96  SYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
              +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIND + H
Sbjct: 514 QAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIALLDIDHFKQINDRYSH 573

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+ I  +S +L+   G    V R GGEEF    +G   ++A      LR  IE   +
Sbjct: 574 IIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVG-DPKQAWGYFEKLRCKIEQVDL 632

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  + P +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 633 SAVA-PGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 679


>gi|255746666|ref|ZP_05420613.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio cholera CIRS 101]
 gi|262166966|ref|ZP_06034685.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio cholerae RC27]
 gi|255736420|gb|EET91818.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio cholera CIRS 101]
 gi|262024607|gb|EEY43289.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio cholerae RC27]
          Length = 461

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/214 (26%), Positives = 106/214 (49%), Gaps = 4/214 (1%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            I   ++ +   Y    + +    L++  +  +L L        ++L  +  ++S L++ 
Sbjct: 245 RILSRWVHIETIYPRYLMPILASGLLLSIVIYTLQLRRTVRLRTQQLEEANQKLSYLAKT 304

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ + N  +F   L +   +   L+++ FDID FK IND FGH  GD  I F+   + 
Sbjct: 305 DSLTDIANRRSFFEHLEAEQTRSGSLTLMVFDIDDFKTINDRFGHGAGDNAICFVVGCVR 364

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
               +  +  R+GGEEFA  A G + +E+  LA  + + +   +  +++  S+ +TIS G
Sbjct: 365 QALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKKWVVNAQHSLSLTISLG 424

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            A   H     ++ + AD  +Y  K++G+N+VV 
Sbjct: 425 CAFYLHPARPFSL-HDADSLMYEGKRNGKNQVVF 457


>gi|109897986|ref|YP_661241.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Pseudoalteromonas atlantica T6c]
 gi|109700267|gb|ABG40187.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Pseudoalteromonas atlantica T6c]
          Length = 1505

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 78/184 (42%), Gaps = 7/184 (3%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISS---LGSYNEKLSIVFFDIDYFKQIND 144
            S +     +   + +L+  D L+ L N S F +S   +     + ++V  D+D FK+IND
Sbjct: 1058 SDITPRKSTEKELLKLANTDPLTDLPNRSFFQASHNNIVRRGTQHALVCLDMDNFKKIND 1117

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKII 203
            + GH  GD +I  ++ +L  + G      RLGG+EF+      +           +   +
Sbjct: 1118 SLGHQTGDLLIKQIARRLQKLAGKSATCYRLGGDEFSILLDKDTDVHSVTHFTQSILDDL 1177

Query: 204  ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
               +  + +     +  S GIA           ++  AD A+Y AK +G N+   FS   
Sbjct: 1178 A--RPFLINHQEFVLGASIGIAFYPEDGSSPQELLKNADTAMYFAKNAGGNKYQFFSGEM 1235

Query: 263  NNTC 266
            N   
Sbjct: 1236 NQNA 1239


>gi|332305203|ref|YP_004433054.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172532|gb|AEE21786.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 569

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 11/190 (5%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           ++L       I + +  SY  + +++  D L+GL N   F  +L            K+++
Sbjct: 117 AILFANKRFEIEQRMHKSYLAVKKMAEKDPLTGLSNRYHFEETLKILIASNKRVTSKVAL 176

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQ 190
           +  D+D FK IND  GH  GDKV+     ++           RLGG+EFA      +S  
Sbjct: 177 LALDLDNFKHINDTMGHAAGDKVLQQSVKRIRKCLRNNEGFARLGGDEFAIILGNITSGD 236

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKK 249
           E + +AN +    + +  NI     +H  +S G+A          T++  AD A+Y AK+
Sbjct: 237 EISRIANRILDSFKVA-FNIDD-KEVHCGVSIGVALCPDDSVNAQTLLKCADIAMYRAKQ 294

Query: 250 SGRNRVVCFS 259
           +G+N V  + 
Sbjct: 295 NGKNGVSFYE 304


>gi|294625114|ref|ZP_06703759.1| sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292600578|gb|EFF44670.1| sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 375

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 13/173 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           ++      + + +R D L+GL N  AF            +  + LS+   D+D+FK +ND
Sbjct: 207 QMDALNADLVEQTRTDPLTGLPNRRAFAVALAAATEQARAVGQPLSVALLDVDHFKTVND 266

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD V+  LS  L         + R GGEEF      +   +A +    LR+ + 
Sbjct: 267 VHGHDQGDAVLRALSTLLRAHMAGAGTIARYGGEEFVLLLPNADLLQARVQCEYLRQSVA 326

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              I +       +T+S G+A    +E +  +I RADQALY AK+ GR++VV 
Sbjct: 327 AMTIALP------VTVSIGVATLYPQESVEAVIKRADQALYAAKRGGRDQVVA 373


>gi|126733986|ref|ZP_01749733.1| hypothetical protein RCCS2_07504 [Roseobacter sp. CCS2]
 gi|126716852|gb|EBA13716.1| hypothetical protein RCCS2_07504 [Roseobacter sp. CCS2]
          Length = 252

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 67/255 (26%), Positives = 107/255 (41%), Gaps = 25/255 (9%)

Query: 16  EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIG-------LTPFYGLEYILVEN 68
           ++ +   +P  ++ + +    + I  V      F  Y          +P Y + +  V  
Sbjct: 2   DQLMRRLAPKGWVGFITRLIGM-IGLVAIANLTFAHYFDTIEVRGMQSPLYHIGHATVVG 60

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS---SLGSY 125
             L+   +T+SL                  R+ QLSR D L+GL N   F        + 
Sbjct: 61  GPLIAFFLTVSLF-----------QIRLQRRLWQLSRKDALTGLNNRRTFFELVSKARAI 109

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           N +  +V  D D FK IND  GH  GD+ +  +S  L         + R+GGEEFA    
Sbjct: 110 NHRGVLVMMDADRFKAINDTHGHLAGDRCLKSISYTLQRNVRRDDVLARIGGEEFALYLT 169

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
           G++ Q A ++   + K I     +  +   + +T+S G A+      I  +  RAD ALY
Sbjct: 170 GATPQTARVIGERITKPI---TFDTDTVKGLSVTLSLGAAQALPDLSIDAVFARADAALY 226

Query: 246 VAKKSGRNRVVCFSD 260
            AK+ GR R + + D
Sbjct: 227 QAKQDGRARYLQWED 241


>gi|326622086|gb|EGE28431.1| AdrA protein [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 365

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 104/232 (44%), Gaps = 12/232 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            F++ +  ++    + L   GL P       L   LSL +I +   LL  ++S     +L
Sbjct: 136 LFTVGMGLLLASCLVTLQLTGL-PVAMRSSSLEVTLSLPVIML-YPLLFAWVSYQTAIKL 193

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
                R+  +S  D ++G+ N   +             ++ + +++  DID+FK IND +
Sbjct: 194 AEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFDHSRRHHREATLLIIDIDHFKSINDTW 253

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ I  L+ QL +       +GR GG+EFA    G+    A    + + + +   
Sbjct: 254 GHDVGDEAIIALTRQLQLTLRGSDIIGRFGGDEFAVIMCGTPADSAITAMSRVHERLNTL 313

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++     P + + IS G+A    +       +  AD ALY AK +GRNR   
Sbjct: 314 RLP--GAPQVMLRISVGVAPLTPQIGHYREWLKSADMALYKAKNAGRNRTEV 363


>gi|322614529|gb|EFY11459.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618249|gb|EFY15140.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625962|gb|EFY22776.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626732|gb|EFY23529.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631300|gb|EFY28060.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635433|gb|EFY32147.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322643433|gb|EFY39997.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647263|gb|EFY43761.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649727|gb|EFY46154.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655599|gb|EFY51905.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658371|gb|EFY54636.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664987|gb|EFY61177.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667375|gb|EFY63537.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674623|gb|EFY70715.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675746|gb|EFY71819.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682382|gb|EFY78405.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684753|gb|EFY80754.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323196169|gb|EFZ81329.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196735|gb|EFZ81880.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204372|gb|EFZ89381.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207720|gb|EFZ92667.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323209990|gb|EFZ94895.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214295|gb|EFZ99048.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323219028|gb|EGA03534.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323230402|gb|EGA14521.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233378|gb|EGA17472.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239415|gb|EGA23465.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242334|gb|EGA26360.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247312|gb|EGA31277.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250402|gb|EGA34286.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256850|gb|EGA40565.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263866|gb|EGA47385.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264113|gb|EGA47621.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271628|gb|EGA55047.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 699

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 115/273 (42%), Gaps = 21/273 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIA--------NIFLFYIGLTPFYGL 61
           ++WL      E           ++   I IA + +          N  + + G+   +  
Sbjct: 156 ALWLTFRLRHEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLA 215

Query: 62  EYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
             + V  L+++ I++ +SL    +      +   L  +   ++QL+  D L+ L N    
Sbjct: 216 VLVSVVALTILGITLLVSLFDARLQARTALLASSLAQANQELAQLALHDTLTRLPNRVLL 275

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L          +   +++F D+D FK +ND +GH +GDK++  ++ +L         
Sbjct: 276 EDRLEQAISKANRESTSFALLFMDLDGFKAVNDAYGHDIGDKLLVAVTHRLNQPLSGQFT 335

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF   A  S+  EAA LA+ L   I+           + +T+S GIA      
Sbjct: 336 LARIGGDEFVLLAEVSAPDEAASLASALVHSIDA--PFTIDPYELVVTLSVGIALYPLDG 393

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +    +++ AD A+Y  K +GRN    F    N
Sbjct: 394 KNERELMFNADAAMYHTKHTGRNGYHFFQPSMN 426


>gi|294010711|ref|YP_003544171.1| putative diguanylate cyclase [Sphingobium japonicum UT26S]
 gi|292674041|dbj|BAI95559.1| putative diguanylate cyclase [Sphingobium japonicum UT26S]
          Length = 593

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 6/176 (3%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQ 141
             +         + Q++ +D L+G     AF+  L        +  +  ++  DID+FK 
Sbjct: 416 RDMSRHKARQRALQQVAALDSLTGADTRRAFLEKLEEEMLRVRHGARACLLLIDIDHFKA 475

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH  GD+V+A   ++L         +GRLGGEEFA    G+    A+++   LR+
Sbjct: 476 VNDCYGHGAGDRVLAGFVERLRPGLRGGDSIGRLGGEEFAILLSGTDVVRASMICERLRE 535

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++    + I SG  I +T SAG+     +     ++  AD+ALY AK SGRN +  
Sbjct: 536 MVTAHPVQIDSGEVIPVTFSAGLVGLGSQSDAQAVLEAADKALYNAKHSGRNCLRL 591


>gi|316933333|ref|YP_004108315.1| PAS/PAC sensor -containing diguanylate cyclase/phosphodiesterase
           [Rhodopseudomonas palustris DX-1]
 gi|315601047|gb|ADU43582.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris DX-1]
          Length = 830

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 11/192 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136
            ++   + E   +  +I+ ++  D L+ L N + +   L     +       ++++  D+
Sbjct: 381 LVAVVDVTERRKAEAKIAHMAHHDGLTNLPNRALYQQRLEQALAQARGSGTMVAVMCVDL 440

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FK +ND+FGHP+GD+++  ++++L    G    V RLGG+EFA      ++  EA+ L
Sbjct: 441 DLFKNVNDSFGHPMGDRLLQCVAERLRQQIGDGDLVARLGGDEFAIVLTSLATPNEASNL 500

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A  L +I+  S      G  + I  S GIA      +    +   AD ALY AK +G   
Sbjct: 501 AARLIEIL--SAPYDMDGLEVVIGASIGIALAPSDGDECEALSRNADMALYRAKAAGGGC 558

Query: 255 VVCFSDIENNTC 266
              F    +   
Sbjct: 559 HHFFEKEMDRQA 570


>gi|317130662|ref|YP_004096944.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475610|gb|ADU32213.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Bacillus cellulosilyticus DSM 2522]
          Length = 774

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 10/178 (5%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147
            S   +   +  D L+GL N       L          ++ L+++F D+D FK +ND  G
Sbjct: 348 QSRKEVEYRANHDILTGLPNRYHIEQLLEQEIVTCDENDQSLALMFMDLDRFKILNDTMG 407

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD+++   + +L         VGRLGG+EF   +  +S ++ + +A  + K + N  
Sbjct: 408 HQIGDQLLIQTAIRLQQHVCENCTVGRLGGDEFLILSKDASIEKVSNIAKKILKDMAN-- 465

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             I +      + S GI+      +    II  AD A+YVAK++G N    ++    N
Sbjct: 466 PFIINSKEFFTSPSIGISVYPKDGQTKDDIIKHADTAMYVAKENGGNNYQFYTPEPTN 523


>gi|254458309|ref|ZP_05071735.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207085145|gb|EDZ62431.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 418

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 105/232 (45%), Gaps = 23/232 (9%)

Query: 58  FYGLEYILVENLSLVIISITISLLL--GYISGSIL----------KELFISYNRISQLSR 105
           F  +   +++N+ +++  I   +L+   Y+  SI           K+L  +  ++  +S 
Sbjct: 179 FLKVYESIIQNVGIILTMIIFGVLIISYYVFKSIQNDHTRLEITTKKLQRANKKLENVSY 238

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+ L N   F       +         ++ +  DID+FKQ ND +GH  GD  +  +
Sbjct: 239 TDSLTSLHNRRYFNFIYDRELKRAKRTKSYITFMMLDIDFFKQYNDTYGHLEGDFALKSV 298

Query: 159 SDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SI 216
           S  L         +V RLGGEEF    + + E  +A LA ++   +   +I   S   + 
Sbjct: 299 SKVLRDSLKRPSDYVFRLGGEEFGVVLIDTDESNSARLAREICDAVRAREIKHESSKANE 358

Query: 217 HITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            +TIS G+      E +    +I RAD+ LY AK+SGRN  +  +++   T 
Sbjct: 359 FLTISIGVVCCVADEALDEEILISRADEMLYKAKESGRNGYIITTNVSEATA 410


>gi|114705189|ref|ZP_01438097.1| GGDEF family protein [Fulvimarina pelagi HTCC2506]
 gi|114539974|gb|EAU43094.1| GGDEF family protein [Fulvimarina pelagi HTCC2506]
          Length = 684

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 105/243 (43%), Gaps = 18/243 (7%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGL----EYILVENLSLVIISITISLLLGYISGSILKEL 93
            I  ++ +    +    + P  GL    +      +++ +  + + ++    S  +++  
Sbjct: 183 LILAIVLLHFTAMDAFSVAPIAGLSSGADSGAFSAMAMSVALVALLIVFTGFSSEVIEFR 242

Query: 94  FISYNR--ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
             + +   ++ ++  D L+G+ N   F   L            + S++  D+D FK +ND
Sbjct: 243 NKTRSEIDLNYIATHDELTGVPNRRKFSEILADRCAKTRDTGAEFSLIMIDLDRFKPVND 302

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS--SEQEAAILANDLRKI 202
             GH  GD V+  ++++L  V     F+ RLGG+EFA  ALGS         L + +  +
Sbjct: 303 TLGHTTGDAVLKRVANRLEHVIRASDFLARLGGDEFAIIALGSTGDRSNVLRLCDRIIDV 362

Query: 203 IENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +  S+  I +G  I +  S G+A    H      +   AD ALY AK +GR+    F   
Sbjct: 363 L--SRPFIINGHVIELGASLGVAIAPAHGTTADDLTQSADIALYAAKDAGRSTYKLFETA 420

Query: 262 ENN 264
             +
Sbjct: 421 MAD 423


>gi|148545650|ref|YP_001265752.1| diguanylate cyclase [Pseudomonas putida F1]
 gi|148509708|gb|ABQ76568.1| diguanylate cyclase [Pseudomonas putida F1]
          Length = 425

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 73/283 (25%), Positives = 122/283 (43%), Gaps = 37/283 (13%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIY---FSIFFSIFIATVI--FIANIFLFYIGL 55
           + +S  + L  WL  E    +   H   +    + +F  +FI  V+    A   L    L
Sbjct: 141 LQQSYPEALLTWLA-EIRWPALHGHWMSLIQMVYPLFLGVFILLVVQYLRAPRPLHAAQL 199

Query: 56  TPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
               G+ ++L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL  
Sbjct: 200 IGLLGIFWMLPQTFILPFTLNIMCSQVMLMIAAAVAHEAY-------QMAFRDELTGLPG 252

Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
             A    +        I   D+D+FK+ ND  GH VGD+V+  ++ +LV   G     G 
Sbjct: 253 RRALNERMQRLGRNYVIAMTDVDHFKKFNDTHGHDVGDQVLRLVASRLVTGGGRAYRYGG 312

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-------------------SSGPS 215
              EEFA    G +  E       +R++I N  +++                   S+G +
Sbjct: 313 ---EEFALVFAGKTAAECVPHVEAVREVIANYVMHLRDQHNRPQDDTAGRQRRAGSAGGT 369

Query: 216 IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           + +TIS G+AER         ++  ADQALY AK +GRN V+ 
Sbjct: 370 VSVTISIGVAERQADHRNPEAVLKSADQALYSAKGAGRNCVMV 412


>gi|238755577|ref|ZP_04616914.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia ruckeri ATCC 29473]
 gi|238706177|gb|EEP98557.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia ruckeri ATCC 29473]
          Length = 669

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 16/189 (8%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFK 140
           SG+ + +   +  R+  L+  D ++GL N  A    + S  +      + I++ D+D FK
Sbjct: 218 SGTDITKERRAQERLRVLANTDMITGLPNRHAIHERINSAIQTRGESSVGIIYLDLDNFK 277

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           ++ND++GH  GD+++  +S  ++        + RLGG+EF      +S    E+ A  + 
Sbjct: 278 KVNDHYGHMFGDRLLKDVSLSILSCLKENEMLARLGGDEFIVLIENTSIIELEETAQRIL 337

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + +R       I + +G       S GIA    H E +  II  AD A+Y AK+ G+   
Sbjct: 338 DQMRAPFRIGLIEVYTG------CSIGIALCPQHGETLENIIRSADTAMYTAKELGKRTY 391

Query: 256 VCFSDIENN 264
             FS   N 
Sbjct: 392 SIFSQEMNK 400


>gi|289828471|ref|ZP_06546329.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 365

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 103/232 (44%), Gaps = 12/232 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            F++ +  ++    + L   GL P       L   LSL +I +   LL  ++S     +L
Sbjct: 136 LFTVGMGLLLASCLVTLQLTGL-PVAMRSSSLEVTLSLPVIML-YPLLFAWVSYQTAIKL 193

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
                R+  +S  D ++G+ N   +             ++ + +++  DID+FK IND +
Sbjct: 194 AEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFDHSRRHHREATLLIIDIDHFKSINDTW 253

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+ I  L+ QL +       +GR GG+EFA    G+    A    + + + +   
Sbjct: 254 GHDAGDEAIIALTRQLQITLRGSDIIGRFGGDEFAVIMCGTPADSAITAMSRVHERLNTL 313

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++     P + + IS G+A    +       +  AD ALY AK +GRNR   
Sbjct: 314 RLP--GAPQVMLRISVGVAPLTPQIGHYREWLKSADMALYKAKNAGRNRTEV 363


>gi|183179475|ref|ZP_02957686.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|183012886|gb|EDT88186.1| GGDEF family protein [Vibrio cholerae MZO-3]
          Length = 512

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 14/215 (6%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           F +YI +       + +    +L  ++I+  + LG +  + +        R+  ++  D 
Sbjct: 303 FQWYIIVEQKDEFNHDIWFKATLGNLAISAFVALGVLGLAQMS-FRGYQKRLEDMAVRDK 361

Query: 109 LSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+G  N   F              +  LS+   D+D+FKQ+NDN+GHP GD V+  +   
Sbjct: 362 LTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPAGDLVLQRVVAL 421

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                     + R GGEEF       ++QEA      +R  I              +T+S
Sbjct: 422 CQHHIAQVGTLCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMHA------SQPQVTVS 475

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ +    E +  +  RADQA+Y AK  GRN+VV
Sbjct: 476 IGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 510


>gi|71905700|ref|YP_283287.1| diguanylate cyclase/phosphodiesterase [Dechloromonas aromatica RCB]
 gi|71845321|gb|AAZ44817.1| diguanylate cyclase/phosphodiesterase [Dechloromonas aromatica RCB]
          Length = 783

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 88/184 (47%), Gaps = 11/184 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFD 135
           +I   +  E  ++ + +  ++  D L+GL N + F + L     +         ++++FD
Sbjct: 344 WIFEDVTNERQLAEH-LLFMAERDPLTGLANRARFAAELDRLVSRFQRDATQSGAVLYFD 402

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID FK IND FGH VGD V+   +D +  +  T   + RLGG+EFA  A G+       +
Sbjct: 403 IDEFKTINDTFGHRVGDNVLVRTADVVSKLVRTGELLARLGGDEFAIVAPGADLDGVQAM 462

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A  + K +         G    +TIS GIA    H      ++  AD A+Y AK+SG+N 
Sbjct: 463 AERVVKALTGLSFEF-DGKRFGLTISLGIALLPEHAASAEELVAHADAAMYQAKRSGKNC 521

Query: 255 VVCF 258
              +
Sbjct: 522 WRIY 525


>gi|24215627|ref|NP_713108.1| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
 gi|24196784|gb|AAN50126.1| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
          Length = 315

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 83/188 (44%), Gaps = 20/188 (10%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
             +  EL  + +++ + +  D L+ L N  AF  +L             LS++  D D+F
Sbjct: 125 SQLATELKDANDKLFEQASTDSLTKLKNRRAFNEALNHLVHFSQKQKSPLSLLMIDADHF 184

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND FGH  GDK++  L+D L         + R GGEEF  A   +SE E   ++  L
Sbjct: 185 KDYNDTFGHLEGDKILIILADLLTKALRKGDVLARYGGEEFIVALPLTSEDETIDISERL 244

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIS--------TIIYRADQALYVAKKSG 251
            + +              IT+S G A                  +I +AD+ALY +K +G
Sbjct: 245 LQTVREFNWEKRI-----ITVSVGAATYDFNSNSKNINLEYSINLIEQADKALYCSKVNG 299

Query: 252 RNRVVCFS 259
           RNR+  FS
Sbjct: 300 RNRITHFS 307


>gi|46202415|ref|ZP_00053248.2| COG5001: Predicted signal transduction protein containing a
           membrane domain, an EAL and a GGDEF domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 787

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 79/187 (42%), Gaps = 19/187 (10%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
                 R+   +  D L+ L N    +  L            K++++F D+D FK IND+
Sbjct: 349 RKDQERRLQHQAMFDGLTDLPNRVQALDRLSREIDLARERERKVALLFVDLDEFKAINDS 408

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-----SSEQEAAILANDLR 200
            GH  GD+++   S++L    G    V R GG+EF           + ++ AA +     
Sbjct: 409 LGHEYGDELLVLASERLRKAAGDGGTVARFGGDEFLVILGDLEDGATPQRVAAGIVERFS 468

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           +    S+ ++ +      T S G+A          T++  AD A+Y AK +GRNR   F+
Sbjct: 469 RPFAISRRDLIA------TASIGLAIYPDDGHTPQTLLRNADIAMYQAKLAGRNRFCFFT 522

Query: 260 DIENNTC 266
              N   
Sbjct: 523 SRMNEEA 529


>gi|313682575|ref|YP_004060313.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313155435|gb|ADR34113.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 652

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 11/165 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + Q +  D L+G  N +   S+          + ++L ++ FDIDYFK++ND +GH  GD
Sbjct: 487 LGQKATHDPLTGAYNRTFLESNYDRIVQKIGYHQKELCVMMFDIDYFKKVNDTYGHNRGD 546

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+ +  + L         + R GGEEF       S+++A  +A  LR  IE +      
Sbjct: 547 NVLKYFVNVLNESIRNEDVLIRWGGEEFILLLAVESDEQALKVAEHLRHTIETAYFEEVE 606

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               HIT S G+     +E I   I RAD+ALY AK SGRNRV  
Sbjct: 607 ----HITCSIGVTLHNFEEKIMQTIKRADEALYKAKSSGRNRVEI 647


>gi|262375814|ref|ZP_06069046.1| predicted protein [Acinetobacter lwoffii SH145]
 gi|262309417|gb|EEY90548.1| predicted protein [Acinetobacter lwoffii SH145]
          Length = 384

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 107/234 (45%), Gaps = 14/234 (5%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
           F+  F I    ++F  ++ L   G    Y   +   + L L+I  I + L +G     ++
Sbjct: 158 FATVFIIMGRALLF--SVLLEDQGFVAHYEPAWAFTQLLLLLIDLIFLGLFIGCAILDLV 215

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE----KLSIVFFDIDYFKQINDNF 146
           ++L             D L+GLLN   F + +   +     + +++  D+D+FK +ND +
Sbjct: 216 RKLQRER-------HHDPLTGLLNRRGFEAYIQKIDPNPALQHAVLMADLDHFKAVNDRY 268

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD V+  +S        +   V R+GGEEF        +  A  +A  +R  +E +
Sbjct: 269 GHQVGDLVLQHISQIFKANIRSKDQVSRIGGEEFLLVLHDIQKDAAFKIAERIRLQLEET 328

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            ++      I++TIS G++   H   I      AD A+Y AK+ GRN+V    +
Sbjct: 329 PLHHEQ-QLIYLTISIGVSFFNHPNQIKEATLAADHAMYQAKQMGRNQVQFAQE 381


>gi|327484024|gb|AEA78431.1| GGDEF family protein [Vibrio cholerae LMA3894-4]
          Length = 976

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 114/228 (50%), Gaps = 22/228 (9%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI------------- 95
           F +   + P +     ++    ++ +++ +SL++  I     +EL++             
Sbjct: 739 FSYVFIIEPHWWQRKEVIVMAGMLFLALAVSLVMWRIRILKRRELYLVEQVALQTQKLRL 798

Query: 96  SYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
              +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIND + H
Sbjct: 799 QAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIAVLDIDHFKQINDRYSH 858

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+ I  +S +L+   G    V R GGEEF    +G   Q+A      LR  IE   +
Sbjct: 859 IIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVG-DPQQAWGYFEKLRCKIEQVDL 917

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  + P +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 918 SAVA-PGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 964


>gi|313681810|ref|YP_004059548.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313154670|gb|ADR33348.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 505

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 85/187 (45%), Gaps = 11/187 (5%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFD 135
              S  ++K +      ++  + +D L+GL N       L          N  ++++F D
Sbjct: 318 AVFSFLMVKNITEPIETLANEAHLDALTGLPNRKYLKELLDQVLSKAKLENSLIAVMFLD 377

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAI 194
           +D FK +ND +GH  GD ++  ++ +L         V RLGG+EF     G+ E      
Sbjct: 378 LDGFKSVNDTYGHETGDLLLKEVAFRLNSCVRQSDTVARLGGDEFIVLIPGTKEARNVET 437

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           +A  + +++   + ++  G S+ I+ S GI     H      ++++AD+A+Y  K +G+ 
Sbjct: 438 IAEKIIQVL-TKEFDL-DGISVTISASIGICVFPDHALDAEEMLHKADKAMYEVKNAGKG 495

Query: 254 RVVCFSD 260
                 D
Sbjct: 496 NYRFCDD 502


>gi|289678766|ref|ZP_06499656.1| GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 524

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 101/227 (44%), Gaps = 14/227 (6%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK----ELFISYN 98
           I  A          P++      +    ++I+++    +L Y     L     EL I+ N
Sbjct: 275 IVAAAGISSQHVFAPWWAYAQRSMTITGIIILALVFLGVLLYRQIQQLITAEGELNIARN 334

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
            +  ++  D L+ L N   F ++L     +       ++I+  DID+FKQ ND +GH  G
Sbjct: 335 DLEIIAHTDSLTHLANRRCFDTALQQEWGRASRNDATIAIILLDIDWFKQYNDTYGHLQG 394

Query: 152 DKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D  +  ++  +   +  +     R GGEEF      +    A  LA  +R  IE S I  
Sbjct: 395 DDCLRQVAGLIGNSLDRSGDMAARYGGEEFVILLPETDLAGALKLAEKIRSSIEASCIEH 454

Query: 211 SSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           SS P   ++IS+G+       K+  +  +  AD+ LY+AK  GRNRV
Sbjct: 455 SSSPLGRLSISSGVVAVNAAEKDGNTAALEEADRLLYLAKTKGRNRV 501


>gi|200390604|ref|ZP_03217215.1| AdrA protein [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|199603049|gb|EDZ01595.1| AdrA protein [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 365

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 104/232 (44%), Gaps = 12/232 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            F++ +  ++    + L   GL P       L   LSL +I +   LL  ++S     +L
Sbjct: 136 LFTVGMGLLLASCLVTLQLAGL-PVAMRSSSLEVTLSLPVIML-YPLLFAWVSYQTAIKL 193

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
                R+  +S  D ++G+ N   +             ++ + +++  DID+FK IND +
Sbjct: 194 AEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFDHSRRHHREATLLIIDIDHFKSINDTW 253

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ I  L+ QL +       +GR GG+EFA    G+    A    + + + +   
Sbjct: 254 GHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEFAVIMCGTPADSAITAMSRVHERLNTL 313

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++     P + + IS G+A    +       +  AD ALY AK +GRNR   
Sbjct: 314 RLP--GAPQVMLRISVGVAPLTPQIGHYREWLKSADMALYKAKNAGRNRTEV 363


>gi|328951312|ref|YP_004368647.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451636|gb|AEB12537.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Marinithermus hydrothermalis DSM 14884]
          Length = 690

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 10/167 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQIND 144
           E   +   +++ +  D L+GLLN         A +++L + NE  +++F D+D FK++ND
Sbjct: 259 ERVAALEALARHAVTDPLTGLLNRRGLEEKGRALLAALQTRNEPAALIFLDLDRFKEVND 318

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+ +  ++ +L           R+GG+EFA    G+    A  +A  L+K +E
Sbjct: 319 TLGHTAGDQALIEVAHRLKATARRTDLTARVGGDEFALLLPGADATTAQQVARRLQKALE 378

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250
                   G +  +  S G+A      + +  +I  AD A+Y AK S
Sbjct: 379 A--PVELEGRAFILGASLGVARFPEDAQDLDGLIRAADVAMYAAKHS 423


>gi|238752589|ref|ZP_04614062.1| Diguanylate cyclase [Yersinia rohdei ATCC 43380]
 gi|238709180|gb|EEQ01425.1| Diguanylate cyclase [Yersinia rohdei ATCC 43380]
          Length = 350

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/228 (26%), Positives = 105/228 (46%), Gaps = 10/228 (4%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR 99
              + IA   L        +  E   ++  + + + +    LLG ++    + L  +   
Sbjct: 125 GLALQIACSLLTAWIFNLPFKPETSSLQVYACLPMIVIYPSLLGLVTYRTARRLAENKEE 184

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + ++S  D L+GL N   +   L         Y    +++  DID FK IND FGH VGD
Sbjct: 185 LLRISVRDGLTGLYNRRHWEHQLHNQFDSCRRYQHGATLILLDIDNFKSINDTFGHAVGD 244

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + I  L+++L++       VGR GG+EF A    ++ ++   +   +++ +       + 
Sbjct: 245 EAITVLAEELLLGLRAIDIVGRYGGDEFGAILPNTTAEQTREVLVRIQEKLAGLVF--TQ 302

Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            P + + +SAGIA+  H        +  AD ALY+AK +GRNR+   S
Sbjct: 303 APLLQLRVSAGIADYRHDMINYQQWLKAADSALYLAKDNGRNRIELAS 350


>gi|168819011|ref|ZP_02831011.1| AdrA protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205344077|gb|EDZ30841.1| AdrA protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320084658|emb|CBY94449.1| Protein adrA [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 370

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 103/231 (44%), Gaps = 13/231 (5%)

Query: 37  IFIATVIFIANIFLFYIGLT--PFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           +F A +  +    L  + LT  P       L   LSL +I +   LL  ++S     +L 
Sbjct: 141 LFTAGMGLLLASCLVTLQLTGLPVAMRSSSLEVTLSLPVIML-YPLLFAWVSYQTAIKLA 199

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFG 147
               R+  +S  D ++G+ N   +             ++ + +++  DID+FK IND +G
Sbjct: 200 EHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFDHSRRHHREATLLIIDIDHFKSINDTWG 259

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD+ I  L+ QL +       +GR GG+EFA    G+    A    + + + +   +
Sbjct: 260 HDVGDEAIIALTRQLQITLRGSDIIGRFGGDEFAVIMCGTPADSAITAMSRVHERLNTLR 319

Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           +     P + + IS G+A    +       +  AD ALY AK +GRNR   
Sbjct: 320 LP--GAPQVMLRISVGVAPLTPQIGHYREWLKSADMALYKAKNAGRNRTEV 368


>gi|200387735|ref|ZP_03214347.1| bacterial signalling protein N repeat [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199604833|gb|EDZ03378.1| bacterial signalling protein N repeat [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 699

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 64/273 (23%), Positives = 115/273 (42%), Gaps = 21/273 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIA--------NIFLFYIGLTPFYGL 61
           ++WL      E           ++   I IA + +          N  + + G+   +  
Sbjct: 156 ALWLTFRLRHEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLA 215

Query: 62  EYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
             + V  L+++ I++ +SL    +      +   L  +   ++QL+  D L+ L N    
Sbjct: 216 VLVSVVALTILGITLLVSLFDARLQARTALLASSLAQANQELAQLALHDTLTRLPNRVLL 275

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L          N   +++F D+D FK +ND +GH +GDK++  ++ +L         
Sbjct: 276 EDRLEQAISKANRENTSFALLFMDLDGFKTVNDAYGHDIGDKLLVAVTHRLNQPLSGQFT 335

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF   A  S+  EAA LA+ L   I+           + +T+S GIA      
Sbjct: 336 LARIGGDEFVLLAEVSAPDEAASLASALVHSIDA--PFTIDPYELVVTLSVGIALYPLDG 393

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +    +++ AD A+Y  K +GRN    F    N
Sbjct: 394 KNERELMFNADAAMYYTKHTGRNGYHFFQPSMN 426


>gi|148265332|ref|YP_001232038.1| diguanylate cyclase [Geobacter uraniireducens Rf4]
 gi|146398832|gb|ABQ27465.1| diguanylate cyclase [Geobacter uraniireducens Rf4]
          Length = 603

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 82/176 (46%), Gaps = 9/176 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQIND 144
           E     N + + S  D L+GL N                     + ++  D+DYFKQ+ND
Sbjct: 420 EAKRLMNTLRESSLKDPLTGLHNRRFLQEYTEKLVAGAKRRRTLVGLIMCDLDYFKQVND 479

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGD V+   +  +         V R GGEEF          +A  +A  +R  ++
Sbjct: 480 AYGHNVGDIVLRETASIIRTSVREADIVVRFGGEEFLVVLFDIGAGDALNVAEKIRVNVQ 539

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           N++I I  G  I  TIS G++E     E     I  AD ALY AK++GRN+V+ F+
Sbjct: 540 NARIKIPEGV-IQKTISLGVSEFPADSETFWHSIKYADVALYKAKEAGRNKVMRFT 594


>gi|298530455|ref|ZP_07017857.1| response regulator receiver modulated diguanylate cyclase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509829|gb|EFI33733.1| response regulator receiver modulated diguanylate cyclase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 425

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 10/170 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + +   S  +   ++  D L+GL N + F+  L         Y   + +++ D+D FK+
Sbjct: 244 DITQQEKSRQKCEYMAMYDSLTGLGNRNLFMDRLEHVLSQARRYGNFVGMLYLDLDGFKE 303

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           IND  GH  GD+V+   + ++           RLGG+EFA       + +EA  +A  + 
Sbjct: 304 INDRLGHAAGDEVLVETARRIKSCLRESDIPARLGGDEFAVILPQMKNPREAEEVAGKIL 363

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
           +   N Q + S+G ++++ ISAG+A    H + +  ++  AD+A+Y AKK
Sbjct: 364 EKW-NPQFDTSAGKAVNMNISAGLAAFPEHGDTLDRLVNTADKAMYQAKK 412


>gi|53721830|ref|YP_110815.1| hypothetical protein BPSS0805 [Burkholderia pseudomallei K96243]
 gi|52212244|emb|CAH38266.1| putative membrane protein [Burkholderia pseudomallei K96243]
          Length = 688

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/215 (30%), Positives = 101/215 (46%), Gaps = 15/215 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRIS----QLSRIDCLSGLLNHSAFIS 120
           L   ++L  ++I I  L+          L  S +R+S    +++  D L+ L N      
Sbjct: 214 LAATVALFTVAILIVALILSHFDVRTTLLAGSVSRLSGQIVRMAAFDTLTDLPNRHTLNE 273

Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            LG           KL+I+F D+D FK IND+ GHP GD+V+   S +L+        V 
Sbjct: 274 HLGRALAAARARGGKLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVA 333

Query: 174 RLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           RLGG+EF       SS+ EAA +A ++ + +   + N   G ++ +T S GIA      +
Sbjct: 334 RLGGDEFVVLLESVSSDDEAARVARNVLERMRKGRWN--DGQALQVTPSIGIALYPKDGD 391

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              T++  AD A+Y AK+SGR     F    +   
Sbjct: 392 TADTLLRHADAAMYAAKRSGRCTYRFFEATMDEAA 426


>gi|15644342|ref|NP_229394.1| hypothetical protein TM1594 [Thermotoga maritima MSB8]
 gi|4982165|gb|AAD36661.1|AE001804_5 conserved hypothetical protein, GGDEF domain [Thermotoga maritima
            MSB8]
          Length = 1206

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 71/182 (39%), Positives = 94/182 (51%), Gaps = 17/182 (9%)

Query: 82   LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
             G I  +IL+E           S  D L+G+L+   F+  L         Y   LSI+  
Sbjct: 1025 FGNILTTILRERL-----YRDRSMKDPLTGVLSRWYFMERLEEEAYKSSRYKSPLSIIMC 1079

Query: 135  DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
            D D FK+IND FGH  GDK + +L  ++  V      VGR GGEEF  A  G+S +EA I
Sbjct: 1080 DADDFKKINDQFGHVAGDKTLGWLGRKMKSVLRKSDLVGRYGGEEFIIALPGTSLEEAKI 1139

Query: 195  LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            +A  LRK +     N     + HIT+S G+AE  + E     I RAD+ALY+AK  G+N 
Sbjct: 1140 VAEKLRKAVMEDPEN-----TYHITLSFGVAEYKNGEDPFETIKRADEALYLAKILGKNS 1194

Query: 255  VV 256
            VV
Sbjct: 1195 VV 1196


>gi|120555824|ref|YP_960175.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei
           VT8]
 gi|120325673|gb|ABM19988.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei
           VT8]
          Length = 312

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           ++L     ++ + S  D L+GL N   F +       S     + LS++  DID+FKQ N
Sbjct: 134 EKLIALQKKLEEYSFKDGLTGLSNRRMFDTVIEDTWLSAQRNRQPLSLILLDIDHFKQYN 193

Query: 144 DNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRK 201
           D +GH  GD+ +  +S  L   +     FVGR GGEEF      S    A  +A   + +
Sbjct: 194 DLYGHIQGDECLRRVSSVLAKAIKRPKDFVGRFGGEEFVIVLPESDADAAVRVAERCISE 253

Query: 202 IIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++     +  +  S  +T+S GI        + ++  +   D  LY AK +GRNR+V 
Sbjct: 254 LLREQIPHADNSASQLVTLSMGIGTIIPSQNDSLTEFLATVDGRLYEAKDAGRNRIVA 311


>gi|308049288|ref|YP_003912854.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
 gi|307631478|gb|ADN75780.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
          Length = 732

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 81/186 (43%), Gaps = 11/186 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFF 134
           L  +  +   +L  +  +++Q +  D L+G  N   F                 L++   
Sbjct: 532 LEQLVTTRTAQLEAANQKLAQQAHRDGLTGAYNRRYFDLSFEVARQHCVRSGSHLALALI 591

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAA 193
           DID+FK IND+ GH VGD  +  L   +   FG     + R GGEEF      S   E  
Sbjct: 592 DIDHFKSINDSHGHLVGDDCLKNLVSLIHRYFGRKLDLLARYGGEEFVLLLPQSDADEVL 651

Query: 194 ILANDLRKIIENSQINIS-SGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKS 250
                LR+ +  S ++ S  G  ++ITIS G  +    +    S  +  AD ALY AK  
Sbjct: 652 RRLESLRRTVAQSAVSESADGEPLYITISIGVLVTHPQYSSQQSDWLMAADSALYQAKSG 711

Query: 251 GRNRVV 256
           GRNR+ 
Sbjct: 712 GRNRLC 717


>gi|218530214|ref|YP_002421030.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium chloromethanicum CM4]
 gi|218522517|gb|ACK83102.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium chloromethanicum CM4]
          Length = 298

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/180 (36%), Positives = 93/180 (51%), Gaps = 18/180 (10%)

Query: 90  LKELFISYNRIS-------QLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDI 136
           L+    +  R++       +L+  D L+GLLN  AF+       +K      L  V  DI
Sbjct: 112 LQARMRAAERLTTLQSDLIRLAETDSLTGLLNRRAFLQRTREAAQKAGSFGHLCAVILDI 171

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND  GH VGD  I  ++  + V        GRLGGEEFA    G    EA  +A
Sbjct: 172 DHFKRINDEHGHDVGDAAIKAVAGMIEV----EGIAGRLGGEEFAVMLAGQRLTEAEAVA 227

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + LR    + +I  + GP + +T S G++E    E +  ++ RAD ALY AK +GRNRVV
Sbjct: 228 SRLRLKTSDLRIRSTKGP-VRLTCSFGVSEWSEGETVEGLLKRADIALYEAKTTGRNRVV 286


>gi|119483236|ref|ZP_01618650.1| PleD-like protein [Lyngbya sp. PCC 8106]
 gi|119458003|gb|EAW39125.1| PleD-like protein [Lyngbya sp. PCC 8106]
          Length = 676

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/190 (27%), Positives = 80/190 (42%), Gaps = 9/190 (4%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------- 130
           + ++     G  L  L +  + +   S  D L+ L N      SL     +++       
Sbjct: 488 LGIMFARSIGLALANLQLRES-LRYQSIRDPLTTLFNRRYMEESLTREINRVTRNTYPIG 546

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           I+  DID+FKQ ND +GH  GD V+  +   L           R GGEE        + +
Sbjct: 547 ILMIDIDHFKQFNDTYGHDTGDSVLKAIGHFLQSQVRGSDIACRYGGEELILILPEVNLK 606

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           E    A  +R+ ++  Q+   S     IT+S G+A           +I  AD ALY AK+
Sbjct: 607 ETQNRAEQIREGVKKLQLKRGSQKLNEITVSIGVACFPDQGLTGEIVIQAADAALYKAKE 666

Query: 250 SGRNRVVCFS 259
            GR++VV   
Sbjct: 667 QGRDQVVVAD 676


>gi|119472717|ref|ZP_01614682.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Alteromonadales bacterium TW-7]
 gi|119444793|gb|EAW26096.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Alteromonadales bacterium TW-7]
          Length = 462

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 9/173 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL  + +++ +++  D L+G+ N   F   +             ++   FD+D FK +ND
Sbjct: 284 ELQQAKSQLEKIAFFDPLTGIPNRRFFSDQVNKLVKGSVRRGGIIAFGLFDVDNFKAVND 343

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGD+V+  L++ L  +        R GGEEFA A +     +A  +A  L   I 
Sbjct: 344 TYGHDVGDRVLVELANILTHILRIDDVFCRFGGEEFAFAVILKEVDDAEPVAEKLINAIR 403

Query: 205 NSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + ++ +    +I++T+S G  +    +   I   I  +D A+Y  KKSG++R 
Sbjct: 404 DLKVPVEGENTINVTVSMGLNVVSPSNSTDIDDHIKISDSAMYQVKKSGKDRY 456


>gi|316933799|ref|YP_004108781.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
 gi|315601513|gb|ADU44048.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
          Length = 405

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 72/256 (28%), Positives = 117/256 (45%), Gaps = 16/256 (6%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG-----LEYI 64
            + LC      +   H  ++   +F+++ +  + F     +F +G +P  G      + +
Sbjct: 153 GLLLCVAALRLAQLRHGRVVDRILFWTLLLFGLHFFPRT-VFTVGASPPSGGPLAFADSV 211

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS--- 121
             + L L  +++  + L   I  + + +L     R   L   D L+GLLN   F +    
Sbjct: 212 FWQTLQLS-LAVLGAALAMAILAAAVSDLIDDLRRERDL---DHLTGLLNRRGFEAEIAA 267

Query: 122 -LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            +    E  +++  D+D+FK IND+FGH VGD V+  +   L         VGR GGEEF
Sbjct: 268 PMRRAPEGAALILCDVDHFKSINDSFGHDVGDVVLQEIGAILRRTARKGDLVGRWGGEEF 327

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
           A     +S  +A   A  LR+ I NS+I      S  +T S G+A        + +   A
Sbjct: 328 AVFLPDASRSDAVECAERLRQTIANSRIPGLDSRS--VTASFGVATIREVGDWAALYKLA 385

Query: 241 DQALYVAKKSGRNRVV 256
           D  LY+AK +GR+R V
Sbjct: 386 DSRLYLAKAAGRDRTV 401


>gi|298291065|ref|YP_003693004.1| diguanylate cyclase [Starkeya novella DSM 506]
 gi|296927576|gb|ADH88385.1| diguanylate cyclase [Starkeya novella DSM 506]
          Length = 390

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 110/225 (48%), Gaps = 8/225 (3%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            ++   A+ +  A + L + G        +   E+LSL+++ I     +G ++ ++ +  
Sbjct: 155 LYTAIAASFVLCAFMLLRH-GNPVIETAPHGWAEDLSLLVM-IACVPGIGAVTLALNQAR 212

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVG 151
             S +R+   +  D L+GLLN  A   ++G     E+ +++ FDID+FK IND  GH VG
Sbjct: 213 IASKHRLD--AMTDPLTGLLNRRALFDAVGERPIAERTAVLVFDIDHFKSINDRHGHAVG 270

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+VIA  +  L           RLGGEEFA     ++ + +  +A  +R+        + 
Sbjct: 271 DRVIAVFARALEEQRPAAAHAARLGGEEFALVLPAATAEGSLRIAEQVRRSFCTLTAELD 330

Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
               +  + SAGIA    H      ++  AD ALY AK +GRNRV
Sbjct: 331 I-ADLACSASAGIAFGVTHGRTFEQVLNEADAALYAAKNAGRNRV 374


>gi|167564771|ref|ZP_02357687.1| hypothetical protein BoklE_19615 [Burkholderia oklahomensis EO147]
          Length = 444

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/256 (24%), Positives = 117/256 (45%), Gaps = 28/256 (10%)

Query: 24  PHTFMIYF----SIFFSIFIATVIFIANIFLFYIGLTPF------------YGLEYILVE 67
           P   +++     ++   + I  +  + +++L  + L  F            +   + +  
Sbjct: 174 PAAIVVWAINLGAVAAVLLIGRMRTVLDVWLIVVVLACFTDASLNLLSTGRFSAGWYIAR 233

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---- 123
             S++   I +  L+  ++  + + LF ++  + + +  D L+ + N S F         
Sbjct: 234 LFSMLTPGILVCALVWEVT-MLYRRLFDAHASLVRTAAHDALTMVYNRSYFNEQFEKAFR 292

Query: 124 ---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEE 179
               +N+ +++V  D+D+FK  ND FGH  GD  +  ++  L  V      FV R GGEE
Sbjct: 293 HAHRHNQPIALVMVDVDHFKHYNDAFGHLQGDTCLVAVAAALSGVANRPNDFVARYGGEE 352

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTII 237
           FA    G+ E+ AA +A  +R+ +E  +I  +  P  ++T+SAG A       E    ++
Sbjct: 353 FAVVLPGTDERGAATIAEQVRQSVERLRI-AADMPPGYVTVSAGYATSSGNPFETPEALV 411

Query: 238 YRADQALYVAKKSGRN 253
             +D ALY AK  GRN
Sbjct: 412 AASDAALYRAKMLGRN 427


>gi|146310487|ref|YP_001175561.1| diguanylate cyclase [Enterobacter sp. 638]
 gi|145317363|gb|ABP59510.1| diguanylate cyclase [Enterobacter sp. 638]
          Length = 594

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 11/177 (6%)

Query: 93  LFISYNRIS----QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           L ++  R+     + +  D L+GL N      +L           E +S +  DID+FK 
Sbjct: 412 LALANQRLRDALLEKALHDPLTGLRNRHHLEDTLRTQISLAARNAEPVSCLMIDIDHFKN 471

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH  GD+VI  ++  +           R GGEEF A   G  E+ A   A ++ +
Sbjct: 472 INDRFGHEAGDRVIKSVAAIIQRAVHDTGVAFRYGGEEFLALLTGVDEEGAHACATEIFE 531

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +    +         + +S GIA          ++  AD ALY AK+ GR+R+V F
Sbjct: 532 GVHTLSMRYGLSEIGPVDVSIGIASYPEHVQSDNLLRAADVALYRAKELGRSRIVSF 588


>gi|307825369|ref|ZP_07655588.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307733544|gb|EFO04402.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 900

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 98/229 (42%), Gaps = 24/229 (10%)

Query: 58  FYGLEYILVENLSLVIISITISLL-------LGYISG-SILKELFISYNRISQLSRIDCL 109
           + G  +  ++N  ++   +TI+ +       + Y++  + + E  +   +I+ L+  D L
Sbjct: 283 WQGEIWNQLKNAEVLPTFVTITAVKNNEGEVINYVATYTDITERKVIEEKINNLAFYDSL 342

Query: 110 SGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           + L N           ++      E  ++   D+D FKQ+ND  GH  GD+++  ++ +L
Sbjct: 343 TQLPNRVLLADRMHQTLARCRRNQEIAAVCMLDLDGFKQVNDTLGHAAGDRLLRDVAQRL 402

Query: 163 VVVFGTPMFVGRLGGEEFAAAALG--SSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
                      R GG+EFA    G  +  +    LA  +  I    QI    G   HI+ 
Sbjct: 403 KECIRQEDTAARFGGDEFALLLGGFATVSECEQTLARIVAAIAAPYQIF---GQVAHISA 459

Query: 221 SAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS---DIENNT 265
           S G+            ++  ADQ +Y  K++G+N    F+   ++ N T
Sbjct: 460 SIGVTLFPEDSSDPDLLLRHADQVMYEVKQAGKNGYKLFNSVHEVRNQT 508


>gi|260774121|ref|ZP_05883036.1| diguanylate cyclase (GGDEF domain) [Vibrio metschnikovii CIP 69.14]
 gi|260611082|gb|EEX36286.1| diguanylate cyclase (GGDEF domain) [Vibrio metschnikovii CIP 69.14]
          Length = 486

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/167 (35%), Positives = 83/167 (49%), Gaps = 10/167 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +   +  DCL+GL N +         ++ L       +I+  DIDYFK+IND +GHP+GD
Sbjct: 320 LEYQAGTDCLTGLFNRAYLSGLIQLELTRLRKVEGVSAILLIDIDYFKRINDTYGHPIGD 379

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  ++  L         V R GGEEF       S Q+A   A +LR  +         
Sbjct: 380 QVLCCVAHSLNQNIREGDAVARFGGEEFMVLLPNISLQDAVEHAENLRLAVSELTFPCLP 439

Query: 213 GPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVC 257
              + IT+S GI+        PI T  + AD+ALY AK SGRNRVVC
Sbjct: 440 -QEVSITVSIGISLLDITKDNPIETAYFDADRALYRAKSSGRNRVVC 485


>gi|260777847|ref|ZP_05886740.1| sensory box/GGDEF family protein [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605860|gb|EEX32145.1| sensory box/GGDEF family protein [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 303

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 12/191 (6%)

Query: 73  IISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
           IIS   + ++G I   + + ++     ++++L+  D L+ L N            +   +
Sbjct: 112 IISSVTNEVIGLIGVSTDITDIVEMREKLAELANTDDLTKLYNRRKLWRQFSEEFAHAQT 171

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           ++  LS +  DID+FK IND FGH  GD+VI  L+D       +    GR+GGEEF    
Sbjct: 172 HDLSLSCIVIDIDHFKHINDTFGHDHGDEVIVQLADIARSHIRSTDSCGRIGGEEFLIVL 231

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQA 243
             ++ ++A  +A  LR    +      +    + +IS G+ E   K+     +  RAD+A
Sbjct: 232 HQTNAEQALQIAERLRCDFYSFPFFTDNN---NFSISCGVTELTEKDKDFFDLYRRADKA 288

Query: 244 LYVAKKSGRNR 254
           LYV+K  GRNR
Sbjct: 289 LYVSKNKGRNR 299


>gi|240138817|ref|YP_002963292.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS sensor [Methylobacterium extorquens AM1]
 gi|240008789|gb|ACS40015.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS sensor [Methylobacterium extorquens AM1]
          Length = 777

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 13/189 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           +   + E   +  RI+ ++  D L+GL N + F + L              +++  D+D 
Sbjct: 334 AAIDVTEQRRAEARITHMAHHDALTGLPNRALFTTRLAEVIAEHARTGAGAALLCLDLDK 393

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND  GHP GD ++  ++D++         V RLGG+EFA           + +A  
Sbjct: 394 FKLVNDTLGHPAGDTLLRAVADRITACLHGEDLVARLGGDEFAVLLRTPYAGTVSAVAGR 453

Query: 199 LRKIIENSQINISSG-PSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +   IE     +  G     I +S GIA    H     T++  AD ALY AK  G   + 
Sbjct: 454 I---IEALSHPVRLGDRECQIGVSVGIACLPEHGTDSDTLLRHADLALYRAKADG-GCIA 509

Query: 257 CFSDIENNT 265
            + +   ++
Sbjct: 510 HYFEAAMDS 518


>gi|209543353|ref|YP_002275582.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531030|gb|ACI50967.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 698

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 91/220 (41%), Gaps = 13/220 (5%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLL 113
           +   YG+E IL+   S +      S +   ++ S+ + +   +   +  L+  D L+GL 
Sbjct: 222 IADRYGMERILLT--SKIPFYDDASGMRYVLTTSLDITDRKKAERELHHLAYYDQLTGLP 279

Query: 114 NHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           + S   + +        +     + V  D+D FK IND  GH +GD ++  ++ +L    
Sbjct: 280 SRSKLETEMQVLLRQRGADGPPFAFVLMDLDRFKGINDTQGHTIGDLLLRKVALRLRTAL 339

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                + RLGG+EFA         +AA +A  +  I    +          +  SAG+  
Sbjct: 340 PRAGIIARLGGDEFAIVHDVIDAADAAHMAERIVGIFA--RPFTLGDRVTSVGASAGVTL 397

Query: 227 RCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                    T++ RAD A+Y AK  GR R   F +     
Sbjct: 398 FPARGATFETLLKRADLAMYRAKNEGRCRYAFFDEEMEQA 437


>gi|28869943|ref|NP_792562.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28853188|gb|AAO56257.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 703

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 96/214 (44%), Gaps = 13/214 (6%)

Query: 64  ILVENLSLVIISITISLLLGYI---SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +LV +LS++ I++   +L  ++   +  +   L  + + ++  +  D L+GL N +    
Sbjct: 220 VLVASLSVLSITLFCCILDSHLETRTAVLANSLVEANHELTHRALHDSLTGLPNRTLLTD 279

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            +     K        +++F D+D FK +ND FGH  GD ++  ++ +L         + 
Sbjct: 280 RIEQTMNKVRENGGCFALMFMDLDGFKPVNDAFGHHTGDLLLRQVALRLRQNLHLHDTLA 339

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           R+GG+EF        +Q+A  +A   R++ E           + I++S GI     +   
Sbjct: 340 RVGGDEFVLLVELQDQQDALAVAT--RQVNEIGNPFTIGEHQLQISLSIGICIYPGNGTT 397

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              ++  AD A+Y  K +G+N    F    N+  
Sbjct: 398 QHELLVNADAAMYHTKAAGKNGYSFFDVSMNSNA 431


>gi|324114581|gb|EGC08549.1| GGDEF domain-containing protein [Escherichia fergusonii B253]
          Length = 467

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 7/165 (4%)

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ LLN     + +           +  ++   DIDYFKQIND +GH  GD  +  +S
Sbjct: 302 DSLTQLLNRRFIPTIMRREISIALHSRKPFALAMLDIDYFKQINDRYGHNAGDNTLKNVS 361

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +     +  +V R GGEEF    + +   +A I+  +LR  +   +I  S+  S  +T
Sbjct: 362 AMIYEHIRSSDYVFRYGGEEFMILLVETELSQAKIILENLRNKMAGLRIQASASESFSVT 421

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +S G+AE  +      +I +AD ALY AK  GRNRV  F     N
Sbjct: 422 VSIGVAEYDYHPDYKLLIEKADSALYYAKSQGRNRVEVFQPHMTN 466


>gi|254000142|ref|YP_003052205.1| PAS/PAC/GAF sensor-containing diguanylate cyclase [Methylovorus sp.
           SIP3-4]
 gi|253986821|gb|ACT51678.1| diguanylate cyclase with PAS/PAC and GAF sensors [Methylovorus sp.
           SIP3-4]
          Length = 640

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 85/180 (47%), Gaps = 12/180 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + + E     + + + ++ D L+GL N  AF  +L           + ++++F D+D FK
Sbjct: 461 TDISERKHLQSLLEKEAKHDVLTGLPNRRAFTEALPLALARADRTQQWMALMFIDLDGFK 520

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDL 199
           QIND  GH  GD ++  ++++L         V R  G+EF        E++ A  +A  +
Sbjct: 521 QINDELGHDAGDMLLREIANRLNSATRQTDTVARFAGDEFVVLLENMPEKQHAEGVAQKI 580

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVC 257
             ++ +    +  G    I+ S G+A       +    ++  AD A+Y AK+SG+N++  
Sbjct: 581 LTLLRD--PVMLGGEPRQISCSLGLAYYAPNSHVQPDMLLKEADNAMYEAKRSGKNQIRI 638


>gi|220908588|ref|YP_002483899.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7425]
 gi|219865199|gb|ACL45538.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7425]
          Length = 337

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 10/179 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDN 145
           L  +   + +L  ID L+G+ N   F         +L+       ++  D+DYFK  ND+
Sbjct: 156 LKQANEELKKLVAIDGLTGISNRRRFDQYFQQEWSRLAREELSLGLILADLDYFKPYNDS 215

Query: 146 FGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            GH +GD  +  ++  +  V+      V R GGEEFA     +S      +A  +R+ ++
Sbjct: 216 HGHLMGDDCLRTIAQTIGRVLKRPGDLVSRYGGEEFAIVLPNTSADGTFKVAEAIRQQVQ 275

Query: 205 NSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +  +  +  P   +T+S G+A            +I  AD+ALY+AK  GRN+VV   DI
Sbjct: 276 SLNLPHNQSPHGIVTLSLGVAALTPIVGFSPDYLIAIADRALYLAKARGRNQVVYLQDI 334


>gi|134097423|ref|YP_001103084.1| hypothetical protein SACE_0818 [Saccharopolyspora erythraea NRRL
           2338]
 gi|291004587|ref|ZP_06562560.1| hypothetical protein SeryN2_08715 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133910046|emb|CAM00158.1| hypothetical protein SACE_0818 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 568

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 9/172 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-----EKLSIVFFDIDYFKQINDNF 146
            L   ++ I++ +  D L+GL N  A    L         + LS+   D+D FK++ND  
Sbjct: 380 RLNHRHDAITRQALQDPLTGLSNRRALDERLDKLQDRHDSQPLSVALVDLDGFKEVNDRC 439

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
            H  GD V+  ++  L     T  FV R GG+EF     G +   A        + ++  
Sbjct: 440 SHAEGDDVLRVVASTLRDTLRTDDFVARYGGDEFVVLLPGVTLTAAEAALQRTVEAVDRL 499

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +S G    +T+S G+     +E    ++ RAD A+Y AK+ G N+V  F
Sbjct: 500 PYQLSRG----VTLSIGVVAMRPQESGGQVLARADAAMYQAKRGGGNQVSAF 547


>gi|193076781|gb|ABO11498.2| GGDEF [Acinetobacter baumannii ATCC 17978]
          Length = 420

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 11/239 (4%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           M+   +  +  +   + + ++   YI L        IL  ++S ++IS   SL L     
Sbjct: 171 MLCVGLLAAFLVFAFLILLDVNCDYIALGRALFGSCILGFSISSMLISRERSLFLNNQLA 230

Query: 88  SILKE-LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139
            I ++ L I  + +  LS+ D L+ + N   F                 L+++F DID+F
Sbjct: 231 EINEQILRIEASELLHLSQQDALTQISNRRTFDEMFDFFYYRANQEKRPLAVLFIDIDFF 290

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND +GH +GDKVI+ ++  +        FV R GGEEF      +  Q A  +A ++
Sbjct: 291 KNYNDFYGHQMGDKVISSIAAAIKNSIRHVDFVARYGGEEFVVLLPETPAQGAYSVAANI 350

Query: 200 RKIIENSQINISSG-PSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRV 255
            K IE   I  ++   S ++TIS G         +    +I+ ADQALY AK+ GRN++
Sbjct: 351 YKAIERQAIPHAASLVSKYVTISLGFTVYTGGLKMGQDRLIHAADQALYRAKQLGRNQI 409


>gi|117618778|ref|YP_854578.1| TPR repeat-containing protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560185|gb|ABK37133.1| tetratricopeptide repeat family [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 596

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 12/176 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGH 148
            L  S   + +L+  D L+ L N  A +  L +  +    L+++  DID+FKQIND  GH
Sbjct: 417 RLHRSSRHLYKLATFDQLTELPNRRALLERLATQWQQEGPLTLLIIDIDHFKQINDRHGH 476

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+ I  L+ +L         VGR GGEEF  A       +   LA  LR+ I     
Sbjct: 477 QAGDRAIQRLARELRSWAPDLQLVGRWGGEEFLVAVP-LPAADCWYLAEQLRQRIGQIDK 535

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                    +TIS G+A R   +  +  +I+RAD A+Y AK+ GRN+ +  ++  N
Sbjct: 536 P-------RMTISIGVAGRSAADDGLGQLIHRADMAMYQAKRQGRNQTILAAEPLN 584


>gi|39936473|ref|NP_948749.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           CGA009]
 gi|39650329|emb|CAE28851.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS domains [Rhodopseudomonas palustris CGA009]
          Length = 824

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 11/192 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136
            ++   + E   +  +I+ ++  D L+ L N + +   L     +       ++++  D+
Sbjct: 375 LVAVVDITERRKAEAKIAHMAHHDGLTNLPNRALYQQRLEQALAQARGSGTMVAVMCVDL 434

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FK +ND+FGHP+GD+++  ++++L    G    V RLGG+EFA      ++  EA+  
Sbjct: 435 DLFKNVNDSFGHPMGDRLLQCVAERLRQQIGDGDLVARLGGDEFAIVLTSLATPNEASSF 494

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A  L +I+  S      G  + I  S GIA      +    +   AD ALY AK +G   
Sbjct: 495 AARLIEIL--SAPYDMDGLEVVIGASIGIALAPSDGDECEALSRNADMALYRAKAAGGGC 552

Query: 255 VVCFSDIENNTC 266
              F    +   
Sbjct: 553 HHFFEKEMDRQA 564


>gi|301382365|ref|ZP_07230783.1| GGDEF domain protein [Pseudomonas syringae pv. tomato Max13]
 gi|302062375|ref|ZP_07253916.1| GGDEF domain protein [Pseudomonas syringae pv. tomato K40]
 gi|302130682|ref|ZP_07256672.1| GGDEF domain protein [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 432

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 119/285 (41%), Gaps = 36/285 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL------FYIG 54
           + +S    L +WL  +    +    ++M    + +++F+ +   +   +L          
Sbjct: 141 LEQSYPVELQVWLA-DIRWPALHG-SWMSLIQLSYAMFLLSFAVLIWQYLEKPRPLHAAQ 198

Query: 55  LTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           +    GL + L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL 
Sbjct: 199 IVGLLGLFWALPKTFILPFTLNILCSQVMLMIAAAVAHEAY-------QMAFRDELTGLP 251

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A    +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        
Sbjct: 252 GRRALNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGRAY 311

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-------------------P 214
           R GGEEFA      +  E       +R+ I N  I + +                     
Sbjct: 312 RYGGEEFAIVFAAKTIDECMPHLEAIRETIANYAIQLRNKDSRPQDDQQGRQRRSGAHEA 371

Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S+ +T+S G+AER         ++  ADQALY AK +GRN VV +
Sbjct: 372 SVSVTVSIGVAERQPEHRTPEEVLKSADQALYAAKGAGRNCVVAY 416


>gi|299065972|emb|CBJ37153.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum CMR15]
          Length = 536

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 13/206 (6%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR----ISQLSRIDCLSGLLNH 115
            L ++L  +  LV + +  SLL       + + L  S  R    ++  +  D L+G+L  
Sbjct: 329 SLGFVLFLSGLLVFVLVVWSLLRERQHHRVTRHLNQSLQRTNSALANEAHFDHLTGVLTR 388

Query: 116 SAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
             F++   +         E+L +V  D+D+FK+IND +GH VGD  +   +     V  +
Sbjct: 389 RRFLALFETVLTRTHVRGEQLVLVLADLDHFKRINDTWGHAVGDLALQRFASLATSVMRS 448

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
              +GRLGGEEFA     ++ +EAA +   LR  +  +  ++ SG  + +T+S G+    
Sbjct: 449 SDLIGRLGGEEFAVVMSRTTLEEAAGVVERLRASVAEADESLPSG--LAMTVSLGMTACH 506

Query: 229 HKEPISTIIYRADQALYVAKKSGRNR 254
             +  S ++ RAD ALY AK+SGRNR
Sbjct: 507 AGDTASEMLRRADLALYRAKESGRNR 532


>gi|229526858|ref|ZP_04416262.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae bv. albensis VL426]
 gi|229337016|gb|EEO02034.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae bv. albensis VL426]
          Length = 469

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/214 (26%), Positives = 106/214 (49%), Gaps = 4/214 (1%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            I   ++ +   Y    + +    L++  +  +L L        ++L  +  ++S L++ 
Sbjct: 253 RILSRWVHIETIYPRYLMPILASGLLLSIVIYTLQLRRTVRLRTQQLEEANQKLSYLAKT 312

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ + N  +F   L +   +   L+++ FDID FK IND FGH  GD  I F+   + 
Sbjct: 313 DSLTDIANRRSFFEYLEAEQTRSGSLTLMVFDIDDFKTINDRFGHGAGDNAICFVVGCVR 372

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
               +  +  R+GGEEFA  A G + +E+  LA  + + +   +  +++  S+ +TIS G
Sbjct: 373 QALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKKWVVNAQHSLSLTISLG 432

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            A   H     ++ + AD  +Y  K++G+N+VV 
Sbjct: 433 CAFYLHPARPFSL-HDADSLMYEGKRNGKNQVVF 465


>gi|115524343|ref|YP_781254.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisA53]
 gi|115518290|gb|ABJ06274.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisA53]
          Length = 834

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 12/192 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFFDID 137
            ++   + E   +  RI+ ++  D L+ L N S +   L    E       ++++  D+D
Sbjct: 386 LVAIVDVTERRKAEARIAHMAHHDGLTNLPNRSFYQERLQHALEARPAECHVAVLCVDLD 445

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA 196
            FK +ND+FGHPVGD+++  ++++L +       V RLGG+EFA   +   S  EA+  A
Sbjct: 446 LFKNVNDSFGHPVGDRLLQLVAERLRLEVRGANMVARLGGDEFAIVLVSVVSPNEASDFA 505

Query: 197 NDLRKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
             +   IE   +     G  + I  S GIA      +    ++  AD ALY AK+SG   
Sbjct: 506 ARV---IERLSVPYDVDGLEVVIGASIGIALSPGDGDNGEDLLRNADMALYRAKESGGGN 562

Query: 255 VVCFSDIENNTC 266
              F    +   
Sbjct: 563 HHFFEKEMDRQA 574


>gi|326387145|ref|ZP_08208755.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208326|gb|EGD59133.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 904

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/193 (32%), Positives = 85/193 (44%), Gaps = 16/193 (8%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           SG+ L E   +    S+L+  D L+GL N      SL              ++   D+D 
Sbjct: 340 SGADLTERRRTQQHASRLAHFDSLTGLANRFFMSQSLEKILVAPQVQQRACAVFLIDLDR 399

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND  GHP GD+++  ++ +L    G    VGRLGG+EF     G  E+   +LA  
Sbjct: 400 FKQVNDTLGHPAGDQLLKQVAQRLERGVGAAGRVGRLGGDEFEIILAGRIERP--MLAQI 457

Query: 199 LRKIIEN-SQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
              IIE+ SQ        + I  S GIA           +I  AD ALY AK  GR R  
Sbjct: 458 AAHIIESLSQPYTLDLGRVMIGASIGIAIAPDDGVTSEALIRNADLALYAAKDGGRGRYH 517

Query: 257 CF-----SDIENN 264
            +     SD E  
Sbjct: 518 FYAHDLHSDAEER 530


>gi|311067396|ref|YP_003972319.1| putative diguanylate cyclase or phosphodiesterase [Bacillus
           atrophaeus 1942]
 gi|310867913|gb|ADP31388.1| putative diguanylate cyclase or phosphodiesterase [Bacillus
           atrophaeus 1942]
          Length = 359

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 113/243 (46%), Gaps = 26/243 (10%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS 88
           +  + +  + +  V  +   F+ +I     +   ++L             S L G +S  
Sbjct: 127 VLRAFYVLLLVNVVSSVMTYFVLHIHSAALHMYYWLL-------------SSLGGMLSFY 173

Query: 89  ILKELFISY---NRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDID 137
           +++    ++    +    +  D L+G+ N   F   +  + ++         ++++ DID
Sbjct: 174 LIEHEAKAHLLFKQYKFQANYDFLTGIFNKRKFEEVMHQFYKQAGRSPSFQFALIYLDID 233

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK IND +GH  GD+V+  L  +L +   T     R+GGEEFA      +  +A  ++ 
Sbjct: 234 RFKHINDQYGHHEGDQVLKELGARLKLNTRTSDPAARIGGEEFAVLLPNCTHAKAVQVSE 293

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +R+ +    I +SSG  + +T+S G A    + +   T+   ADQ LY AK++GRN+V 
Sbjct: 294 RIRQAVSGEPIILSSGDKLSVTVSLGTAHYPLNADQPETLPLIADQKLYQAKQTGRNKV- 352

Query: 257 CFS 259
           C+S
Sbjct: 353 CYS 355


>gi|300705131|ref|YP_003746734.1| integral membrane sensor protein; ggdef, mhyt and eal domains
           [Ralstonia solanacearum CFBP2957]
 gi|299072795|emb|CBJ44150.1| putative integral membrane sensor protein; putative GGDEF, MHYT and
           EAL domains [Ralstonia solanacearum CFBP2957]
          Length = 692

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 62/281 (22%), Positives = 112/281 (39%), Gaps = 25/281 (8%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY- 63
           L    ++W+      +S          ++   + I  + +       +  L  F G    
Sbjct: 151 LASGAALWIVFRLRRQSRRVRAMRAGAAVVMGLAIVGMHYTGMAAAGF-PLGSFCGAARG 209

Query: 64  -ILVENLSLVIISITISLLLGYISGSIL------------KELFISYNRISQLSRIDCLS 110
            I  E L+LVII +T+++L   +  S+L              L  +   ++ L+  D L+
Sbjct: 210 GISAEWLALVIIVVTLAVLAMALVISVLDLRMEARTAVLATSLAKANKELAYLALHDSLT 269

Query: 111 GLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            L N       L    +         +++F D+D FK +ND +GH  GD ++  ++ ++V
Sbjct: 270 KLSNRLLLEDRLEQAIQSASRNRGSFALMFLDLDGFKAVNDVYGHHAGDLLLTDVARRIV 329

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   V R+GG+EF   A      +A  LA+    +    +  +  G  + ++ S G
Sbjct: 330 ACVRLQDTVARVGGDEFVVLASVGEPADAGTLADA--LLAAAREPFLVDGHELRVSTSIG 387

Query: 224 IAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           IA           ++  AD A+Y AK +GR+    F    N
Sbjct: 388 IALYPGDGASQHDLLTNADAAMYHAKGTGRDTYCFFEASMN 428


>gi|188586921|ref|YP_001918466.1| diguanylate cyclase with GAF sensor [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351608|gb|ACB85878.1| diguanylate cyclase with GAF sensor [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 597

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 59/188 (31%), Positives = 87/188 (46%), Gaps = 10/188 (5%)

Query: 81  LLGYISGSILKEL--FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVF 133
           L    S  +   L   + + ++  L+  D  + L N+  F   L           L+++ 
Sbjct: 376 LTEIFSAQVASALSNALHHQKVEDLAVTDEKTNLYNYRYFYKQLEQAIYDYPERSLTMLM 435

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID FK  ND FGHP GD+V+  +S  L           R GGEEF+   LG+   EA 
Sbjct: 436 IDIDDFKLYNDRFGHPAGDEVLEIISKLLKDNIRDRDIACRYGGEEFSVLLLGARGIEAE 495

Query: 194 ILANDLRKIIENSQINISSG-PSIHITISAGIAERCHKEPIS-TIIYRADQALYV-AKKS 250
            +A  +R  I N         P + +T+S G AE       S  ++ ++DQALY+ +KK 
Sbjct: 496 KIAERIRSAIANYPFPGDEKTPKVKLTVSIGGAEYPQDGTSSMDLMRKSDQALYLGSKKQ 555

Query: 251 GRNRVVCF 258
           G+NRV  F
Sbjct: 556 GKNRVSMF 563


>gi|167624570|ref|YP_001674864.1| diguanylate cyclase/phosphodiesterase [Shewanella halifaxensis
           HAW-EB4]
 gi|167354592|gb|ABZ77205.1| diguanylate cyclase/phosphodiesterase [Shewanella halifaxensis
           HAW-EB4]
          Length = 574

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 10/182 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           + +     +++   +  D L+ L N   F   L  +  K        +++F DID FK +
Sbjct: 117 VTKQAELEDKLLYQATHDNLTKLANRKQFEERLKRFIAKSKLHTLSGAVIFIDIDRFKPV 176

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD+++  ++  +         + RLGG+EF+      S  +A  +A  +RK 
Sbjct: 177 NDTAGHAAGDELLKRVTAIMKTNIRERDTLARLGGDEFSILLEMCSLNKAVQIAEKIRKE 236

Query: 203 IENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           IE+         S  + ISAGI+      + +S II  AD A  +AK +GRNRV   + +
Sbjct: 237 IESFVFTY-GKKSFKVGISAGISLVNVPYDTVSAIINAADNACQIAKNNGRNRVHVIN-L 294

Query: 262 EN 263
           EN
Sbjct: 295 EN 296


>gi|192292258|ref|YP_001992863.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris TIE-1]
 gi|192286007|gb|ACF02388.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris TIE-1]
          Length = 824

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 11/192 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136
            ++   + E   +  +I+ ++  D L+ L N + +   L     +       ++++  D+
Sbjct: 375 LVAVVDITERRKAEAKIAHMAHHDGLTNLPNRALYQQRLEQALAQARGSGTMVAVMCVDL 434

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FK +ND+FGHP+GD+++  ++++L    G    V RLGG+EFA      ++  EA+  
Sbjct: 435 DLFKNVNDSFGHPMGDRLLQCVAERLRQQIGDGDLVARLGGDEFAIVLTSLATPNEASSF 494

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A  L +I+  S      G  + I  S GIA      +    +   AD ALY AK +G   
Sbjct: 495 AARLIEIL--SAPYDMDGLEVVIGASIGIALAPSDGDECEALSRNADMALYRAKAAGGGC 552

Query: 255 VVCFSDIENNTC 266
              F    +   
Sbjct: 553 HHFFEKEMDRQA 564


>gi|157962335|ref|YP_001502369.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157847335|gb|ABV87834.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
          Length = 341

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 12/210 (5%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILK---ELFISYNRI---SQLSRIDCLSGL 112
           + +E +L    SLV  S  I +   + S  + K   E+     ++         D L+  
Sbjct: 128 FTIEEVLTVVKSLVQDSNDIRMSAQHFSAQLAKAQSEIDALKQQLKQSEHEMHYDALTSS 187

Query: 113 LNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
           LN  AF + L      + + L ++  DID+FK  ND +GH +GD+V+  ++ +L      
Sbjct: 188 LNRRAFDNDLKGILQQHPQGLCLIIADIDHFKVFNDTYGHQLGDQVLKAVTKRLTEACKD 247

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITISAGIAE 226
              + R GGEEFA     S  + A  LA  +R+ +E   + +   G +I +I+ S G+AE
Sbjct: 248 GTKLYRFGGEEFALIVPKSELRRARQLAESMRRSLEKLTLKDKRKGETINNISASFGVAE 307

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               +    +I RAD  LY AK  GRNRV+
Sbjct: 308 YQTDDTNIALIDRADSQLYQAKNLGRNRVM 337


>gi|332533747|ref|ZP_08409605.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036802|gb|EGI73264.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 854

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 12/186 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQ 141
           + E      ++   +  D L+ L N S F++ L               +++F D+D FK 
Sbjct: 424 IDERKKIEQQLYHDAHHDSLTSLPNRSLFLTQLEKTLQHYQRFPEHHFAVLFIDLDKFKD 483

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLR 200
           IND  GH  GD+ +  +S+           + RLGG+EF       +E Q+A  +AN + 
Sbjct: 484 INDQLGHHAGDQFLINVSELFAQCIREHDLLARLGGDEFVILLTHLTEPQQAEDVANRII 543

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
            +++  +     G S+    S GI            II  AD A+Y AK SG+NR   F 
Sbjct: 544 DLMK--KPFYLKGESLQSGASIGITYSKKSYTHTDEIIRDADAAMYHAKNSGKNRYELFH 601

Query: 260 DIENNT 265
            +   +
Sbjct: 602 PLLTQS 607


>gi|229020519|ref|ZP_04177266.1| Sensory box/GGDEF [Bacillus cereus AH1273]
 gi|228740790|gb|EEL91041.1| Sensory box/GGDEF [Bacillus cereus AH1273]
          Length = 885

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 85/185 (45%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
           Y+    + E      +I+ L+  D L+ L N  +F   L              +++F D+
Sbjct: 435 YLMIKDITESKQQQEQINFLAYHDTLTELANRRSFHQHLEKAIARAKVSKRPFAVMFIDL 494

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAIL 195
           D FK IND  GH VGD ++  ++ +L  +    M + RL G+EF        ++ +   +
Sbjct: 495 DRFKVINDTLGHRVGDLLLIAVAKRLERISTQNMKLARLAGDEFTILIENYKKRTDVKRI 554

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
           A+ +  ++  ++        +HI+ S GIA      E   +I+  AD A+Y AK  G+NR
Sbjct: 555 ADMI--VVAMNEPFEIENQHLHISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNR 612

Query: 255 VVCFS 259
              ++
Sbjct: 613 SSLYT 617


>gi|332530041|ref|ZP_08405991.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Hylemonella gracilis ATCC 19624]
 gi|332040514|gb|EGI76890.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Hylemonella gracilis ATCC 19624]
          Length = 650

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 85/185 (45%), Gaps = 12/185 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLS-IVFFDIDYFK 140
             +        R+S  +  D L+GL N   F   L          + L+ ++F D+D FK
Sbjct: 449 QDITARKALEARLSHDALHDTLTGLPNRMMFHDRLCQVLESARRRQGLAAVLFLDLDGFK 508

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
           ++ND  GH  GD+++  ++ +L         V R+GG+EF       +++ +   +A  +
Sbjct: 509 EVNDTLGHAAGDELLKQVALRLEECMRAEDTVARIGGDEFGVVLASVAQEGDCEQVATKI 568

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +  SQ  +     + I+ S G A    H + + +++ RAD  +Y AK  G+ R  C+
Sbjct: 569 LDAL--SQPFMLGQQEVRISASVGGALFPLHGQSMDSLLARADTGMYAAKHEGKGRF-CW 625

Query: 259 SDIEN 263
            D E+
Sbjct: 626 EDKES 630


>gi|296282041|ref|ZP_06860039.1| hypothetical protein CbatJ_00385 [Citromicrobium bathyomarinum
           JL354]
          Length = 348

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 73/254 (28%), Positives = 120/254 (47%), Gaps = 12/254 (4%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL 69
           ++ L  ++N ++F      + F +   + +   +F A +       TP+   +  L E +
Sbjct: 96  TLALARKRNRDAFENGLVALGFLVITGVILRVPMFPALL----DEPTPWAVFDAALFERV 151

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEK 128
            +  + +  + L   I   I+ ++ + Y      S  D L+ LLN  AF + +G      
Sbjct: 152 YIQCMGVLNASLALLIVARIVAKVIVGY---RHSSERDGLTELLNRRAFDALVGRPATAP 208

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            +I+  DID FKQIND FGH VGD+VI   +  L          GR+GGEEFA   L + 
Sbjct: 209 GAIIMCDIDRFKQINDRFGHHVGDEVIRSFACMLSEH---GHHAGRVGGEEFALLLLDTG 265

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
             EAA  A  +R   ++   + + GP + ++ S G+A       +   +  AD+ALY AK
Sbjct: 266 LDEAAAQAERIRSAFDSL-YHPAIGPDVQLSASFGVAAFEPGSSVRAAMRSADRALYTAK 324

Query: 249 KSGRNRVVCFSDIE 262
            +GRNRV    + +
Sbjct: 325 HTGRNRVTVAREED 338


>gi|289677142|ref|ZP_06498032.1| GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 308

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 8/170 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y   +Q +  D L+   N  A   SL         + + LS++  DID+FK++ND +GH 
Sbjct: 140 YRIATQTALRDPLTSTGNRIAMDQSLAREIEISRRHKQPLSLLMLDIDHFKKVNDEYGHH 199

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  L         V R GGEEF      +    A ++   L + + N +  
Sbjct: 200 TGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGADSAELIGQRLCQAVRNLEFR 259

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               P++ +T+S G +     E   +++ RAD ALYVAK+ GRNR+   S
Sbjct: 260 -ELSPALTMTVSLGCSTLLPTETADSLLRRADNALYVAKREGRNRIAMAS 308


>gi|229513868|ref|ZP_04403330.1| GGDEF family protein [Vibrio cholerae TMA 21]
 gi|229349049|gb|EEO14006.1| GGDEF family protein [Vibrio cholerae TMA 21]
          Length = 495

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 14/215 (6%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           F +YI +       + +    +L  ++I+  + LG +  + +        R+  ++  D 
Sbjct: 286 FQWYIIVEQKDEFNHDIWFKATLGNLAISAFVALGVLGLAQMS-FRGYQKRLEDMAVRDK 344

Query: 109 LSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+G  N   F              +  LS+   D+D+FKQ+NDN+GHP GD V+  +   
Sbjct: 345 LTGAYNRQVFEELVDDAISLANKESNPLSLAVIDLDHFKQVNDNYGHPAGDLVLQRVVAL 404

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                     + R GGEEF       ++QEA      +R  I              +T+S
Sbjct: 405 CQRHIAQVGTLCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMHA------SQPQVTVS 458

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ +    E +  +  RADQA+Y AK  GRN+VV
Sbjct: 459 IGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 493


>gi|158314510|ref|YP_001507018.1| diguanylate cyclase [Frankia sp. EAN1pec]
 gi|158109915|gb|ABW12112.1| diguanylate cyclase [Frankia sp. EAN1pec]
          Length = 556

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 108/255 (42%), Gaps = 26/255 (10%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           P     + ++ +++   T +         +  TP   +E      +SL+ ++ T  ++  
Sbjct: 294 PRAMWAHAALPYAVLGVTSLLPLGKL---VAGTPLDRIEAYGA--VSLLALAFTRQMITI 348

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----------------NE 127
             +  +L  +     ++   +  D L+GL N + F   L                     
Sbjct: 349 AENTHLLTAVREREKQLHYQAFHDPLTGLANRALFARRLQREVDHGIEPRNDGAPTGGQA 408

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            +S++F D+D FK++ND FGH  GD+++  ++++L         V RLGG+EFA    G+
Sbjct: 409 AVSVLFLDLDQFKRVNDTFGHATGDELLKIIAERLRAGTRANDTVARLGGDEFAVILDGA 468

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK---EPISTIIYRADQAL 244
              +   +A  L   ++       +G +     S G+             +++++AD A+
Sbjct: 469 GPDKPVQMAERLAAAVQT--PCQLAGQTYLPRASLGLVTLDPDARPASPDSLLHQADLAM 526

Query: 245 YVAKKSGRNRVVCFS 259
           Y AK++  +R+V + 
Sbjct: 527 YAAKRAQTSRLVVYD 541


>gi|157374293|ref|YP_001472893.1| sensory box protein [Shewanella sediminis HAW-EB3]
 gi|157316667|gb|ABV35765.1| sensory box protein [Shewanella sediminis HAW-EB3]
          Length = 340

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 83/179 (46%), Gaps = 18/179 (10%)

Query: 91  KELFISYNRISQ-------LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
           KEL      + +       LS ID L+ + N  +F   L         YN  LS+  FDI
Sbjct: 163 KELEKKNQELEEKIKEVALLSNIDPLTSIANRRSFEKELQKEVLRSRRYNHPLSLTIFDI 222

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK +ND +GH  GD ++  L   +        F  R GGEEF       + ++A ++ 
Sbjct: 223 DLFKNVNDTYGHKKGDDILQKLCKLVSTNIRELDFFARWGGEEFVLIFPELTLKQALVVT 282

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             LR  I   +I     P ++IT S G+ E   ++ I  I  R D +LY AK +GRNR+
Sbjct: 283 EKLRTTISQYEIE----PDLYITCSFGVTECKDEDSIEDIFQRIDNSLYQAKSNGRNRI 337


>gi|153825311|ref|ZP_01977978.1| GGDEF family protein [Vibrio cholerae MZO-2]
 gi|149740995|gb|EDM55064.1| GGDEF family protein [Vibrio cholerae MZO-2]
          Length = 512

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 14/215 (6%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           F +YI +       + +    +L  ++I+  + LG +  + +        R+  ++  D 
Sbjct: 303 FQWYIIVEQKDEFNHDIWFKATLGNLAISAFVALGVLGLAQMS-FRGYQKRLEDMAVRDK 361

Query: 109 LSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+G  N   F              +  LS+   D+D+FKQ+NDN+GHP GD V+  +   
Sbjct: 362 LTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPAGDLVLQRVVAL 421

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                     + R GGEEF       ++QEA      +R  I              +T+S
Sbjct: 422 CQRHIAQVGTLCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMHA------SQPQVTVS 475

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ +    E +  +  RADQA+Y AK  GRN+VV
Sbjct: 476 IGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 510


>gi|121586234|ref|ZP_01676024.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121726575|ref|ZP_01679824.1| GGDEF family protein [Vibrio cholerae V52]
 gi|147673860|ref|YP_001217741.1| GGDEF family protein [Vibrio cholerae O395]
 gi|153817082|ref|ZP_01969749.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|153820810|ref|ZP_01973477.1| GGDEF family protein [Vibrio cholerae B33]
 gi|227082348|ref|YP_002810899.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|254849354|ref|ZP_05238704.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|297580867|ref|ZP_06942792.1| GGDEF family protein [Vibrio cholerae RC385]
 gi|298500400|ref|ZP_07010205.1| GGDEF family protein [Vibrio cholerae MAK 757]
 gi|121549500|gb|EAX59526.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121631028|gb|EAX63407.1| GGDEF family protein [Vibrio cholerae V52]
 gi|126512350|gb|EAZ74944.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|126521602|gb|EAZ78825.1| GGDEF family protein [Vibrio cholerae B33]
 gi|146315743|gb|ABQ20282.1| GGDEF family protein [Vibrio cholerae O395]
 gi|227010236|gb|ACP06448.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|227014120|gb|ACP10330.1| GGDEF family protein [Vibrio cholerae O395]
 gi|254845059|gb|EET23473.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|297534693|gb|EFH73529.1| GGDEF family protein [Vibrio cholerae RC385]
 gi|297541093|gb|EFH77147.1| GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 512

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 14/215 (6%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           F +YI +       + +    +L  ++I+  + LG +  + +        R+  ++  D 
Sbjct: 303 FQWYIIVEQKDEFNHDIWFKATLGNLAISAFVALGVLGLAQMS-FRGYQKRLEDMAVRDK 361

Query: 109 LSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+G  N   F              +  LS+   D+D+FKQ+NDN+GHP GD V+  +   
Sbjct: 362 LTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPAGDLVLQRVVAL 421

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                     + R GGEEF       ++QEA      +R  I              +T+S
Sbjct: 422 CQRHIAQVGTLCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMHA------SQPQVTVS 475

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ +    E +  +  RADQA+Y AK  GRN+VV
Sbjct: 476 IGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 510


>gi|24374995|ref|NP_719038.1| GGDEF domain-containing protein [Shewanella oneidensis MR-1]
 gi|24349727|gb|AAN56482.1|AE015785_5 GGDEF domain protein [Shewanella oneidensis MR-1]
          Length = 312

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 85/183 (46%), Gaps = 8/183 (4%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           L  ++   + +L +      + S+ D L+GL N       L             L +V  
Sbjct: 130 LNIVTMRDVHQLQLLLEENERQSKTDLLTGLANRRQIEDVLAAAMAKSDRTQSSLCVVMC 189

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK INDNFGH  GD V+  ++ QL         + R GGEEF         + A +
Sbjct: 190 DIDFFKNINDNFGHLCGDDVLKIVASQLQHSAQAATCIARWGGEEFLIVLEHVVPESAGV 249

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           L   LR +I  +    S G  + +T+S G  +    E + +++ R D+ALY AK  GRN+
Sbjct: 250 LCEQLRGLIAATDYQ-SYGQHMQLTMSFGCVQYQANESLQSLLCRVDKALYQAKNGGRNQ 308

Query: 255 VVC 257
           VV 
Sbjct: 309 VVM 311


>gi|15641365|ref|NP_230997.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121591222|ref|ZP_01678523.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121728782|ref|ZP_01681796.1| GGDEF family protein [Vibrio cholerae V52]
 gi|147673928|ref|YP_001216913.1| GGDEF family protein [Vibrio cholerae O395]
 gi|153818345|ref|ZP_01971012.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|153822059|ref|ZP_01974726.1| GGDEF family protein [Vibrio cholerae B33]
 gi|227081524|ref|YP_002810075.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|254848475|ref|ZP_05237825.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|298498562|ref|ZP_07008369.1| GGDEF family protein [Vibrio cholerae MAK 757]
 gi|9655846|gb|AAF94511.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121546920|gb|EAX57071.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121628959|gb|EAX61412.1| GGDEF family protein [Vibrio cholerae V52]
 gi|126511092|gb|EAZ73686.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|126520392|gb|EAZ77615.1| GGDEF family protein [Vibrio cholerae B33]
 gi|146315811|gb|ABQ20350.1| GGDEF family protein [Vibrio cholerae O395]
 gi|227009412|gb|ACP05624.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|227013270|gb|ACP09480.1| GGDEF family protein [Vibrio cholerae O395]
 gi|254844180|gb|EET22594.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|297542895|gb|EFH78945.1| GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 976

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 22/228 (9%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI------------- 95
           F +   + P +     ++    ++ +++ +SL++  I     +EL++             
Sbjct: 739 FSYVFIIEPHWWQRKEVIVMAGMLFLALAVSLVMWRIRILKRRELYLVEQVALQTQKLRL 798

Query: 96  SYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
              +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIND + H
Sbjct: 799 QAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIALLDIDHFKQINDRYSH 858

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+ I  +S +L+   G    V R GGEEF    +G   ++A      LR  IE   +
Sbjct: 859 IIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVG-DPKQAWGYFEKLRCKIEQVDL 917

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  + P +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 918 SAVA-PGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 964


>gi|313202106|ref|YP_004040764.1| PAS/PAC/GAF sensor-containing diguanylate cyclase [Methylovorus sp.
           MP688]
 gi|312441422|gb|ADQ85528.1| diguanylate cyclase with PAS/PAC and GAF sensors [Methylovorus sp.
           MP688]
          Length = 640

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 85/180 (47%), Gaps = 12/180 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + + E     + + + ++ D L+GL N  AF  +L           + ++++F D+D FK
Sbjct: 461 TDISERKHLQSLLEKEAKHDVLTGLPNRRAFTEALPLALARADRTQQWMALMFIDLDGFK 520

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDL 199
           QIND  GH  GD ++  ++++L         V R  G+EF        E++ A  +A  +
Sbjct: 521 QINDELGHDAGDMLLREIANRLNSATRQTDTVARFAGDEFVVLLENMPEKQHAEGVAQKI 580

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVC 257
             ++ +    +  G    I+ S G+A       +    ++  AD A+Y AK+SG+N++  
Sbjct: 581 LTLLRD--PVMLGGEPRQISCSLGLAYYAPNSHVQPDMLLKEADNAMYEAKRSGKNQIRI 638


>gi|304410707|ref|ZP_07392325.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|307304802|ref|ZP_07584552.1| diguanylate cyclase [Shewanella baltica BA175]
 gi|304351191|gb|EFM15591.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|306912204|gb|EFN42628.1| diguanylate cyclase [Shewanella baltica BA175]
          Length = 302

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 79/179 (44%), Gaps = 11/179 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
            S + +      ++ QLS  D L+GL N       L         +    SI+  D+D+ 
Sbjct: 122 ASNISQRHELELQLRQLSDTDQLTGLYNRRRLERDLTVQFDTFQRHRTPTSILILDLDHL 181

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND  GH  GDK+I  +++     F       R GG+EF  A  G  + +A   A  L
Sbjct: 182 KSINDQLGHHAGDKIIIAVAETCRTQFRKTDSAYRFGGDEFVIALPGVEQSQAVKFAEYL 241

Query: 200 RKII-ENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
                   Q +  +G  +  T+S G+A            + RAD ALY AK++G+NRV+
Sbjct: 242 CDCFYSALQQHAVNG--LFATVSIGVASIEALDTSYEDTLKRADAALYQAKRNGKNRVI 298


>gi|229529570|ref|ZP_04418960.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229333344|gb|EEN98830.1| GGDEF family protein [Vibrio cholerae 12129(1)]
          Length = 691

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 114/228 (50%), Gaps = 22/228 (9%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI------------- 95
           F +   + P +     ++    ++ +++ +SL++  I     +EL++             
Sbjct: 454 FSYVFIIEPHWWQRKEVIVMAGMLFLALAVSLVMWRIRILKRRELYLVEQVALQTQKLRL 513

Query: 96  SYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
              +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIND + H
Sbjct: 514 QAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIAVLDIDHFKQINDRYSH 573

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+ I  +S +L+   G    V R GGEEF    +G   Q+A      LR  IE   +
Sbjct: 574 IIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVG-DPQQAWGYFEKLRCKIEQVDL 632

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  + P +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 633 SAVA-PGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 679


>gi|53717465|ref|YP_105413.1| EAL/GGDEF domain-containing protein [Burkholderia mallei ATCC
           23344]
 gi|67643727|ref|ZP_00442471.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia mallei GB8 horse 4]
 gi|124382703|ref|YP_001024617.1| EAL/GGDEF domain-containing protein [Burkholderia mallei NCTC
           10229]
 gi|126447769|ref|YP_001078949.1| EAL/GGDEF domain-containing protein [Burkholderia mallei NCTC
           10247]
 gi|167002113|ref|ZP_02267903.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei PRL-20]
 gi|254174526|ref|ZP_04881188.1| EAL/GGDEF domain protein [Burkholderia mallei ATCC 10399]
 gi|254204109|ref|ZP_04910468.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei FMH]
 gi|254209086|ref|ZP_04915433.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei JHU]
 gi|254355635|ref|ZP_04971915.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei 2002721280]
 gi|52423435|gb|AAU47005.1| EAL/GGDEF domain protein [Burkholderia mallei ATCC 23344]
 gi|124290723|gb|ABM99992.1| diguanylate cyclase (GGDEF)/EAL domain protein [Burkholderia mallei
           NCTC 10229]
 gi|126240623|gb|ABO03735.1| diguanylate cyclase (GGDEF)/EAL domain protein [Burkholderia mallei
           NCTC 10247]
 gi|147744993|gb|EDK52074.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei FMH]
 gi|147750309|gb|EDK57379.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei JHU]
 gi|148023728|gb|EDK82790.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei 2002721280]
 gi|160695572|gb|EDP85542.1| EAL/GGDEF domain protein [Burkholderia mallei ATCC 10399]
 gi|238525126|gb|EEP88555.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia mallei GB8 horse 4]
 gi|243062177|gb|EES44363.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei PRL-20]
          Length = 688

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/215 (30%), Positives = 100/215 (46%), Gaps = 15/215 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRIS----QLSRIDCLSGLLNHSAFIS 120
           L   ++L  ++I I  L+          L  S +R+S    +++  D L+ L N      
Sbjct: 214 LAATVALFTVAILIVALILSHFDVRTTLLAGSVSRLSGQIVRMAAFDTLTDLPNRHTLNE 273

Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            LG           KL+I+F D+D FK IND+ GHP GD+V+   S +L+        V 
Sbjct: 274 HLGRALAAARARGGKLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVA 333

Query: 174 RLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           RLGG+EF       SS+ EAA +A D+ + +   + N   G ++ +T S GIA      +
Sbjct: 334 RLGGDEFVVLLESVSSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGD 391

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              T++  AD A+Y AK+ GR     F    +   
Sbjct: 392 TADTLLRHADAAMYAAKRGGRCTYRFFEATMDEAA 426


>gi|308185409|ref|YP_003929541.1| cellulose synthesis regulatory protein [Pantoea vagans C9-1]
 gi|308055689|gb|ADO07859.1| Cellulose synthesis regulatory protein [Pantoea vagans C9-1]
          Length = 523

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 82/183 (44%), Gaps = 13/183 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
            +  EL  +   +   ++ D L+G+ N   F   L             +S++ FDIDYFK
Sbjct: 333 RLRDELTAANRSLENQAQSDGLTGVANRRHFDHMLTESLLNAELSGLPVSLILFDIDYFK 392

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           + ND +GH  GD  +  ++  L            R GGEEFA          A  LA  +
Sbjct: 393 RYNDTYGHVAGDDCLKKVATVLKHAARRKNELTARYGGEEFAIILSEQPLSTAVDLAESI 452

Query: 200 RKIIENSQINI--SSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNR 254
              +    I    +  P  H+T+SAG A     +       +I RAD+ALY AK++GRNR
Sbjct: 453 IAAVNRLAIPHMTTELPQKHVTLSAGCAMYFATDLQHGKQGLIKRADEALYRAKRAGRNR 512

Query: 255 VVC 257
           V+C
Sbjct: 513 VMC 515


>gi|299537176|ref|ZP_07050479.1| response regulator receiver modulated diguanylate cyclase
           [Lysinibacillus fusiformis ZC1]
 gi|298727417|gb|EFI67989.1| response regulator receiver modulated diguanylate cyclase
           [Lysinibacillus fusiformis ZC1]
          Length = 543

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 62/190 (32%), Positives = 94/190 (49%), Gaps = 14/190 (7%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           LL+ Y+S  +          + Q   ID L+ + N     S +           E  SI 
Sbjct: 220 LLVAYVSNRL-----AYKRELEQAIVIDELTQIYNRKFMESQMKLFIKHHQQNKEHFSIA 274

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+DYFK++ND +GH VGD+V+   +  +  + G      R GGEEF      ++++EA
Sbjct: 275 MIDLDYFKKVNDTYGHLVGDEVLKGFASLVKELKGAEEIACRFGGEEFVILMPRTTKKEA 334

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSG 251
            I    LR  +E  +I  ++G S H+T S+GIAE          ++  ADQALY AK+ G
Sbjct: 335 FIFIEKLRTSMEK-KIFTANGTSFHVTFSSGIAEATSTNLHPKKMLEEADQALYTAKQLG 393

Query: 252 RNRVVCFSDI 261
           RN+ + F +I
Sbjct: 394 RNQTIIFDNI 403


>gi|229521460|ref|ZP_04410879.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
 gi|229341558|gb|EEO06561.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
          Length = 691

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 22/228 (9%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI------------- 95
           F +   + P +     ++    ++ +++ +SL++  I     +EL++             
Sbjct: 454 FSYVFIIEPHWWQRKEVIVMAGMLFLALAVSLVMWRIRILKRRELYLVEQVALQTQKLRL 513

Query: 96  SYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
              +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIND + H
Sbjct: 514 QAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIALLDIDHFKQINDRYSH 573

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+ I  +S +L+   G    V R GGEEF    +G   ++A      LR  IE   +
Sbjct: 574 IIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVG-DPKQAWGYFEKLRCKIEQVDL 632

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  + P +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 633 SAVA-PGLNVTVSIGFADVQQAESYETVLKLADHALLTAKKLGRNRVV 679


>gi|228915118|ref|ZP_04078715.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228844547|gb|EEM89601.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 785

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 94/200 (47%), Gaps = 10/200 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           +++V I I       Y+    +  +    ++I+ L+  D ++ + N   F   L    E+
Sbjct: 323 VTIVPIMIEGQTFGSYVMVKDITRMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIER 382

Query: 129 -------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                    +++ D++ FK IND  GH +GD V+  ++ +        + + R+GG+EFA
Sbjct: 383 AQKTQGEFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSISLARIGGDEFA 442

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRA 240
                 +EQ+   L   L +I E  +  + +  S ++++S GIA         +T++  A
Sbjct: 443 VLVHNHTEQQLMNLCETLFRITE--EPFVVNQHSFYLSLSIGIAMYPFGGINTTTLLQHA 500

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D A+Y AK+ G N V  + +
Sbjct: 501 DIAMYSAKEKGNNAVCMYDE 520


>gi|254491242|ref|ZP_05104423.1| hypothetical protein MDMS009_1574 [Methylophaga thiooxidans DMS010]
 gi|224463755|gb|EEF80023.1| hypothetical protein MDMS009_1574 [Methylophaga thiooxydans DMS010]
          Length = 1085

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 11/186 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + +       +  ++  D L+ L N   F                 L+I F D+D FK
Sbjct: 500 SDITQTKQQQETLEMMAHYDVLTKLPNRVLFADRFSQAMAHSNRTETMLAICFLDLDNFK 559

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
            +ND +GH VGD+++  ++ +L         + R GG+EFA        Q E   +   +
Sbjct: 560 PVNDTYGHEVGDQLLIEVAVRLRKNVRDEDTISRFGGDEFAILFRDIESQSECEFMLRRI 619

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + +   Q    +   I I+ S+G+         + T++  ADQ +Y AK +GRN    F
Sbjct: 620 HESLA--QPYNVNDTRIDISASSGVTFYPQENADLDTLLRHADQTMYQAKLAGRNTYKLF 677

Query: 259 SDIENN 264
           +  +N 
Sbjct: 678 NPAKNR 683


>gi|297580347|ref|ZP_06942274.1| GGDEF family protein [Vibrio cholerae RC385]
 gi|297535993|gb|EFH74827.1| GGDEF family protein [Vibrio cholerae RC385]
          Length = 469

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/214 (26%), Positives = 106/214 (49%), Gaps = 4/214 (1%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            I   ++ +   Y    + +    L++  +  +L L        ++L  +  ++S L++ 
Sbjct: 253 RILSRWVHIETIYPRYLMPILASGLLLSIVIYTLQLRRTVRLRTQQLEEANQKLSYLAKT 312

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ + N  +F   L +   +   L+++ FDID FK IND FGH  GD  I F+   + 
Sbjct: 313 DSLTDIANRRSFFEYLEAEQTRSGSLTLMVFDIDDFKTINDRFGHGAGDNAICFVVGCVR 372

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
               +  +  R+GGEEFA  A G + +E+  LA  + + +   +  +++  S+ +TIS G
Sbjct: 373 QALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKKWVVNAQHSLSLTISLG 432

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            A   H     ++ + AD  +Y  K++G+N+VV 
Sbjct: 433 CAFYLHPARPFSL-HDADSLMYEGKRNGKNQVVF 465


>gi|146338937|ref|YP_001203985.1| putative signal peptide [Bradyrhizobium sp. ORS278]
 gi|146191743|emb|CAL75748.1| conserved hypothetical protein; putative signal peptide
           [Bradyrhizobium sp. ORS278]
          Length = 636

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/194 (29%), Positives = 92/194 (47%), Gaps = 13/194 (6%)

Query: 81  LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIV 132
           L G+++    + +      R+  L+  D L+GL N   F   L      +Y EK  L+++
Sbjct: 429 LDGFVAVTRDVTQQKNLQGRLETLAIEDGLTGLANRRRFDERLLEEWGRAYREKTSLALL 488

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQE 191
             DID+FK  ND +GHP GD+ +  ++  L      +   V R GGEEFA     +    
Sbjct: 489 MIDIDHFKAFNDAYGHPAGDECLHTVAGILADEAQRSSDLVARYGGEEFAILLPNTDAAG 548

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK----EPISTIIYRADQALYVA 247
            A L   +R+ +  + +  +  P   +T S G A            +++I  AD+ALYVA
Sbjct: 549 CARLGERIRRALHAAALVHAHNPPGIVTASLGGAVCRPGLERSAGPASLIEAADRALYVA 608

Query: 248 KKSGRNRVVCFSDI 261
           K  GR+R+V   ++
Sbjct: 609 KDGGRDRMVMAGEV 622


>gi|62178996|ref|YP_215413.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|167551810|ref|ZP_02345563.1| AdrA protein [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|224582221|ref|YP_002636019.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|62126629|gb|AAX64332.1| putative diguanylate cyclase/phosphodiesterase domain 1 [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|205323419|gb|EDZ11258.1| AdrA protein [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|224466748|gb|ACN44578.1| adrA protein [Salmonella enterica subsp. enterica serovar Paratyphi
           C strain RKS4594]
 gi|322713453|gb|EFZ05024.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 370

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 104/232 (44%), Gaps = 12/232 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            F++ +  ++    + L   GL P       L   LSL +I +   LL  ++S     +L
Sbjct: 141 LFTVGMGLLLASCLVTLQLTGL-PVAMRSSSLEVTLSLPVIML-YPLLFAWVSYQTAIKL 198

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
                R+  +S  D ++G+ N   +             ++ + +++  DID+FK IND +
Sbjct: 199 AEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFDHSRRHHREATLLIIDIDHFKSINDTW 258

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ I  L+ QL +       +GR GG+EFA    G+    A    + + + +   
Sbjct: 259 GHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEFAVIMCGTPADSAITAMSRVHERLNTL 318

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++     P + + IS G+A    +       +  AD ALY AK +GRNR   
Sbjct: 319 RLP--GAPQVMLRISVGVAPLTPQIGHYREWLKSADMALYKAKNAGRNRTEV 368


>gi|53802775|ref|YP_115468.1| sensory box protein/response regulator [Methylococcus capsulatus
           str. Bath]
 gi|53756536|gb|AAU90827.1| sensory box protein/response regulator [Methylococcus capsulatus
           str. Bath]
          Length = 710

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 15/190 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + E   S   I   S  D L+ L N       L            ++++++ D+D+FK
Sbjct: 259 SDITEKKASEALIEFQSCYDALTRLPNRRLLAERLALASERAHRDRGRVALLYIDLDHFK 318

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM--FVGRLGGEEFAAAALG-SSEQEAAILAN 197
           ++ND  GH  GD ++  ++ ++           V RLGG+EF           E   LA 
Sbjct: 319 EVNDTLGHHQGDALLVQVAHRVRRCVRESETVTVARLGGDEFTVIVPDFEGMDEVERLA- 377

Query: 198 DLRKIIENSQINISSGPSI-HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             R II++       G  + H++ S GI            ++  ADQA+Y AK++GRN  
Sbjct: 378 --RAIIDSLSEPFRLGDQLAHVSASIGITVFPDDAADTDGLLRNADQAMYAAKRAGRNGY 435

Query: 256 VCFSDIENNT 265
             F+      
Sbjct: 436 QAFNPEMQRA 445


>gi|45657014|ref|YP_001100.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|45600251|gb|AAS69737.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 315

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 83/188 (44%), Gaps = 20/188 (10%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
             +  EL  + +++ + +  D L+ L N  AF  +L             LS++  D D+F
Sbjct: 125 SQLATELKDANDKLFEQASTDSLTKLKNRRAFNEALNHLVHFSQKQKSPLSLLMIDADHF 184

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND FGH  GDK++  L+D L         + R GGEEF  A   +SE E   ++  L
Sbjct: 185 KDYNDTFGHLEGDKILIILADLLTKALRKGDVLARYGGEEFIVALPLTSEDETIDISERL 244

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIS--------TIIYRADQALYVAKKSG 251
            + +              IT+S G A                  +I +AD+ALY +K +G
Sbjct: 245 LQTVREFNWEKRI-----ITVSVGAATYDFNSNSKNINLEYSINLIEQADKALYCSKVNG 299

Query: 252 RNRVVCFS 259
           RNR+  FS
Sbjct: 300 RNRITHFS 307


>gi|117928368|ref|YP_872919.1| diguanylate cyclase [Acidothermus cellulolyticus 11B]
 gi|117648831|gb|ABK52933.1| diguanylate cyclase [Acidothermus cellulolyticus 11B]
          Length = 440

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 97/204 (47%), Gaps = 16/204 (7%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---- 125
           +L  + + I  +L +    ++ E       +   +R D  +GL N + +           
Sbjct: 221 ALYAVPLAIPPVLVFQRTLLIAE-------LRHAARTDPKTGLANAAYWREVAEREIARA 273

Query: 126 ---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
               E ++I+  D+D+FK +ND FGH +GD V+  ++  L        FVGR GGEEF  
Sbjct: 274 RSGGESVAILLVDVDHFKAVNDRFGHLIGDDVLRAVAGGLTHGLRPRDFVGRFGGEEFVI 333

Query: 183 AALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCH-KEPISTIIYRA 240
              GS  ++AA+ A  +R+ I +  ++    G  + +T+S G+A        +  ++  A
Sbjct: 334 LLAGSDLEQAAVAAERVRQHIAHLTVDTPLHGDPVSVTVSVGVAAFRENGHSVLELLDAA 393

Query: 241 DQALYVAKKSGRNRVVCFSDIENN 264
           D ALY AK++GRN V   + +   
Sbjct: 394 DAALYEAKRAGRNCVRVATGVRQQ 417


>gi|294139365|ref|YP_003555343.1| GGDEF domain-containing protein [Shewanella violacea DSS12]
 gi|293325834|dbj|BAJ00565.1| GGDEF domain protein [Shewanella violacea DSS12]
          Length = 544

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 103/233 (44%), Gaps = 22/233 (9%)

Query: 44  FIANIFLFYIG----LTPF----YGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
            +A   L YI     L PF    +G+ ++L+    +  I    SL+   +     ++L  
Sbjct: 296 LVATPSLGYIAERRSLLPFISCAFGVLFVLLAGAYISAIIRRSSLIKVEVEART-QDLNE 354

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148
           +   + QLS  D L+ + N   F        ++       LS++  DID FKQ ND++GH
Sbjct: 355 AKLELEQLSHTDSLTKIANRRKFDDKFEKEWQRAVRSKTSLSLIMIDIDNFKQFNDHYGH 414

Query: 149 PVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
             GD+ +  ++  L          V R GGEEF      ++E   A+LA+     +E  +
Sbjct: 415 LAGDQCLRDVAKSLQSTMSRNTDLVARYGGEEFVILLPNTNEP--ALLADKCLINVEKLR 472

Query: 208 INI-SSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I    S  S ++TIS G+      +      +  + D+ LY+AK  G+NRV  
Sbjct: 473 IPHEPSSVSEYVTISIGVISTSPTYNSDPLALSAKVDKLLYLAKDLGKNRVCV 525


>gi|330939651|gb|EGH42955.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 308

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 8/170 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y   +Q +  D L+   N  A   SL         + + LS++  DID+FK++ND +GH 
Sbjct: 140 YRIATQTALRDPLTSTGNRIAMDQSLAREIEISRRHKQPLSLLMLDIDHFKKVNDEYGHH 199

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  L         V R GGEEF      +    A ++   L + + N +  
Sbjct: 200 TGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGADSAELIGQRLCQAVRNLEFR 259

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               P++ +T+S G +     E   +++ RAD ALYVAK+ GRNR+   S
Sbjct: 260 -ELSPALTMTVSLGCSTLLPTETADSLLRRADNALYVAKREGRNRIAMAS 308


>gi|229028422|ref|ZP_04184544.1| Sensory box/GGDEF [Bacillus cereus AH1271]
 gi|228732871|gb|EEL83731.1| Sensory box/GGDEF [Bacillus cereus AH1271]
          Length = 569

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 89/175 (50%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 135 RRLRVSESRYRELAYHDALTSLPNRLQLITTVNEMIADKKEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQA-- 252

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 253 PFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 307


>gi|167622217|ref|YP_001672511.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167352239|gb|ABZ74852.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 392

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 68/266 (25%), Positives = 115/266 (43%), Gaps = 25/266 (9%)

Query: 11  IWLCHEKNLESF----SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILV 66
           +W      L SF     P    +  S++  + I+ ++      L   G      L   + 
Sbjct: 129 VWKASASGLASFNITQLPSMLNLVASLYIPVGISCIVISIYTVLHASGTNSTIALTQFIW 188

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN 126
                +   + +++LL  ++ + L  +  +   +  L+  D L+GL +  A  +   S N
Sbjct: 189 LFHHYLPKEMPLAILLSMLATAYLFSMLFA---LYDLAYKDELTGLSSRRALNTMALSLN 245

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
              S+   DID+FK+ ND +GH VGD+V+  ++ +L  V G    V R GGEEF      
Sbjct: 246 NHYSLAMIDIDHFKKFNDTYGHDVGDQVLRLVAKKLSKVKGGG-QVFRYGGEEFTIVFEN 304

Query: 187 SSEQEAAILANDLRKIIENSQI-----------------NISSGPSIHITISAGIAERCH 229
            + +       +LR  I +  I                    +  +++ITIS G+AE+  
Sbjct: 305 KNIERVLPHLEELRHKISHYDIVLREQGRKSRSKLDRNSKHKANQALNITISIGVAEQHG 364

Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255
           +      + RAD+ALY AK +GRN V
Sbjct: 365 ETTFEKTLKRADEALYKAKNNGRNCV 390


>gi|15641607|ref|NP_231239.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|153818146|ref|ZP_01970813.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|227081752|ref|YP_002810303.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|229508456|ref|ZP_04397959.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229511472|ref|ZP_04400951.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229518612|ref|ZP_04408055.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229607863|ref|YP_002878511.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254848717|ref|ZP_05238067.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255744969|ref|ZP_05418919.1| GGDEF domain protein [Vibrio cholera CIRS 101]
 gi|262161745|ref|ZP_06030763.1| GGDEF domain protein [Vibrio cholerae INDRE 91/1]
 gi|298498318|ref|ZP_07008125.1| GGDEF family protein [Vibrio cholerae MAK 757]
 gi|9656110|gb|AAF94753.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|126511332|gb|EAZ73926.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|227009640|gb|ACP05852.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|229343301|gb|EEO08276.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229351437|gb|EEO16378.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229354410|gb|EEO19333.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229370518|gb|ACQ60941.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254844422|gb|EET22836.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255737440|gb|EET92835.1| GGDEF domain protein [Vibrio cholera CIRS 101]
 gi|262028477|gb|EEY47132.1| GGDEF domain protein [Vibrio cholerae INDRE 91/1]
 gi|297542651|gb|EFH78701.1| GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 353

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 111/258 (43%), Gaps = 29/258 (11%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           IW C       F P  F I+ S  F+   + +  I    + Y          + L +  +
Sbjct: 98  IWSC-------FVPILFYIFTSARFAFVTSCLFLIIQSNIIY----------WQLQQTGA 140

Query: 71  LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSY 125
            +  S+ + L   YI   ++  ++    R     +  L+  D L+G  N  +  +S   +
Sbjct: 141 ALSWSVLLHLCFAYIGIWVVAHVYEDNRRKIENSLLYLASRDPLTGAHNRLSLTTSFQHF 200

Query: 126 NE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   L ++  D+D+FK IND FGH  GDKV+   +     V G    + R+GGEEF
Sbjct: 201 ERFSDQTSLCLLVIDLDFFKSINDQFGHDTGDKVLIETTRLFTQVVGDNN-LYRIGGEEF 259

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                  S ++A  +   LR I+            + +TIS G+ E    + ++ ++  A
Sbjct: 260 CVTLFDQSLEQAGRVCEHLRAIVSQHLFAFRE-KRVQVTISIGVCEYQAGDQLNDLLKFA 318

Query: 241 DQALYVAKKSGRNRVVCF 258
           D  LY AKK+GRN+V  F
Sbjct: 319 DMELYRAKKAGRNQVRLF 336


>gi|315127743|ref|YP_004069746.1| hypothetical protein PSM_A2681 [Pseudoalteromonas sp. SM9913]
 gi|315016257|gb|ADT69595.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 362

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 77/246 (31%), Positives = 106/246 (43%), Gaps = 17/246 (6%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIG--LTPFYGLEYILVENLSLVIISITISLL 81
           P  F +    + SIF A + F    +L Y    LT   GL   L   + + I  I I   
Sbjct: 113 PFAFFLVGRNWGSIFSA-IAFCICAYLTYKQQQLTVTIGLG-SLFNIIEVSIAHILIFRF 170

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
                 S    L      I  L+  D L+GL N   F  +L               +   
Sbjct: 171 YEKTRFSAYAHLTTRNIEIQHLAETDKLTGLYNRQKFDYALSQVITSSKETKTTNCLFIC 230

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK+IND +GH VGDKV+A  +  +         + R GGEEF      +S   A  
Sbjct: 231 DIDHFKKINDAYGHLVGDKVLAEFAKLIKSNMPNHSLIARWGGEEFTIILPNTSLTNALT 290

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            AN L+  I    +      +I +TIS G+A     + + +++ RAD ALY AK +GRN 
Sbjct: 291 QANALKDYISTHPV-----ANIQLTISIGVATISSDDSVISVLERADSALYEAKNNGRNS 345

Query: 255 VVCFSD 260
           V  FSD
Sbjct: 346 V-YFSD 350


>gi|254503359|ref|ZP_05115510.1| hypothetical protein SADFL11_3398 [Labrenzia alexandrii DFL-11]
 gi|222439430|gb|EEE46109.1| hypothetical protein SADFL11_3398 [Labrenzia alexandrii DFL-11]
          Length = 777

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 8/181 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
            SI  E   +  RI  L+  D L+GL N   F   L           E +++VF D+D F
Sbjct: 326 ASIAVERDRAEKRIRYLADHDPLTGLPNRRKFKRKLEAKIEASRQTGEPVAVVFVDMDNF 385

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND++GH VGD V++ ++D+++          R GG+EF     G +  ++ +     
Sbjct: 386 KFINDSYGHAVGDDVLSTVADRILGSHNITFETIRFGGDEFVLFVDGPTAHKSELKDYLA 445

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           R   E  +       ++H+T S G A      +    ++  ADQA++ AK  GR+    F
Sbjct: 446 RMRAEILKTIELDTLTLHVTCSIGTAVFPLDGDTADEVLKNADQAMFEAKNLGRDNFFIF 505

Query: 259 S 259
            
Sbjct: 506 D 506


>gi|170750583|ref|YP_001756843.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
 gi|170657105|gb|ACB26160.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
          Length = 703

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 12/213 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           +  +     V+        L +I   I +     +  +++ ++R D L+ L N + F   
Sbjct: 226 WAWMMTRGKVVARAADGRALRFIGTQIDITARKAAEGQVAHMARHDGLTDLPNRALFYER 285

Query: 122 LGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L      L       +++  D+D FK +ND+ GH  GD ++  ++ ++  V      V R
Sbjct: 286 LEIRLADLHLNGGACAVLCLDLDRFKTVNDSLGHAAGDFLLRAVAHRIRAVLRADDMVAR 345

Query: 175 LGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           LGG+EFA     + +   A  LA  L   ++           + + +S GIA+   H   
Sbjct: 346 LGGDEFAVLVADADDPARAETLAARLIAAVQAPIPF--GKRRLKVGLSVGIAQAPSHGFD 403

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             T+  RAD AL+ AK  GRN    F    +  
Sbjct: 404 SETLFRRADLALHRAKTEGRNTHRVFEPAMDEA 436


>gi|254225783|ref|ZP_04919388.1| GGDEF family protein [Vibrio cholerae V51]
 gi|254286467|ref|ZP_04961424.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|125621689|gb|EAZ50018.1| GGDEF family protein [Vibrio cholerae V51]
 gi|150423416|gb|EDN15360.1| GGDEF family protein [Vibrio cholerae AM-19226]
          Length = 512

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 14/215 (6%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           F +YI +       + +    +L  ++I+  + LG +  + +        R+  ++  D 
Sbjct: 303 FQWYIIVEQKDEFNHDIWFKATLGNLAISAFVALGVLGLAQMS-FRGYQKRLEDMAVRDK 361

Query: 109 LSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+G  N   F              +  LS+   D+D+FKQ+NDN+GHP GD V+  +   
Sbjct: 362 LTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPAGDLVLQRVVAL 421

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                     + R GGEEF       ++QEA      +R  I              +T+S
Sbjct: 422 CQRHIAQVGTLCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMHA------SQPQVTVS 475

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ +    E +  +  RADQA+Y AK  GRN+VV
Sbjct: 476 IGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 510


>gi|119773920|ref|YP_926660.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B]
 gi|119766420|gb|ABL98990.1| GGDEF domain protein [Shewanella amazonensis SB2B]
          Length = 592

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 95/198 (47%), Gaps = 11/198 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSL 122
           S ++I++   + LG   G+     + S  R+ QL+  D L+GL +   F       +   
Sbjct: 385 SRLLIAVLFCITLGL--GTWGWHSWQSQRRLKQLAEFDSLTGLFSRGHFTQVSLSAVEYA 442

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
            + N  +S +  D+D FKQIND  GH  GD  +  ++             GR+GGEEF  
Sbjct: 443 KTLNAPISCILLDVDKFKQINDRLGHATGDWALKEVARICKEQVREYEIFGRIGGEEFCL 502

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRAD 241
                  + A  LAN + + +  +  + +SG    +T S G+ +       +  ++ +AD
Sbjct: 503 LLPECELKHATDLANAMCQALRGADTS-ASGHKFELTASFGVTDNARAGYSLDKLMAQAD 561

Query: 242 QALYVAKKSGRNRVVCFS 259
           +A+Y AKK GRN+V C+S
Sbjct: 562 KAMYSAKKQGRNQVQCYS 579


>gi|332706953|ref|ZP_08427013.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L]
 gi|332354218|gb|EGJ33698.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L]
          Length = 296

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 59/179 (32%), Positives = 94/179 (52%), Gaps = 9/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
            + +E   + + +S+++ +D L+ L N  A  S L          +  LS++  D+DYFK
Sbjct: 114 RLYREAMHTNDFLSRIALVDPLTELSNRRAMESELPRQVKNAFSQSRPLSLIILDVDYFK 173

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            INDN+GHPVGD+ +  L+ +L         + R GGEEF      +  +EA  +AN +R
Sbjct: 174 SINDNYGHPVGDRALKLLASRLKHNLRIQDSLFRYGGEEFVIILSHTDCEEARAVANRVR 233

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVC 257
            II +    I     + ITIS G+A   + +     +++  ADQ L +AK +GRN+V C
Sbjct: 234 HIISDQPFQIDRRLVLPITISLGVAALNNTDDHRGESLLRSADQNLRIAKSNGRNQVYC 292


>gi|332529422|ref|ZP_08405382.1| diguanylate cyclase with GAF sensor [Hylemonella gracilis ATCC
           19624]
 gi|332041138|gb|EGI77504.1| diguanylate cyclase with GAF sensor [Hylemonella gracilis ATCC
           19624]
          Length = 465

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 28/187 (14%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+  +   D L+G+ N   F +             + L  +  D+D+FK+INDN GHP 
Sbjct: 276 ERLKLVGLTDALTGVHNRRYFEARCLEEVKAAQRSRQPLVCLLLDVDHFKRINDNHGHPA 335

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+  +   +         V R GGEEF      +  Q     A+ +R  I ++ + +
Sbjct: 336 GDAVLREVGQVIRGQLRGNDVVARYGGEEFVLLLPNTPLQGGVETADRIRLAIASAAMPV 395

Query: 211 SSGPS--IHITISAGIAE-------------------RCHKEPISTIIYRADQALYVAKK 249
            +     +HIT+S G A+                       E +  ++ +ADQALY AK+
Sbjct: 396 QTEQDTPLHITVSLGAAQMDMEERKPVAEAGDAAPRRSTPVESMKRLVQQADQALYAAKQ 455

Query: 250 SGRNRVV 256
           +GRNRV 
Sbjct: 456 AGRNRVQ 462


>gi|320162150|ref|YP_004175375.1| putative signaling protein [Anaerolinea thermophila UNI-1]
 gi|319996004|dbj|BAJ64775.1| putative signaling protein [Anaerolinea thermophila UNI-1]
          Length = 820

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 54/217 (24%), Positives = 98/217 (45%), Gaps = 14/217 (6%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G  ++LV  L++         + G  S S + E   +  ++++ +  D L+GL N +  +
Sbjct: 343 GTVWVLVRGLAMRNREGEAYRIAG--SMSDITERKQAIEQLTRAALYDTLTGLPNRTLLL 400

Query: 120 SSLGSYNEK--------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
             LG   E+         +++F D+D FK +ND+ GHP GD+++  +  +L         
Sbjct: 401 DRLGMAIERSRRAGGTFGAVLFLDLDQFKVVNDSLGHPAGDEMLIQVGHRLQKCLRASDT 460

Query: 172 VGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCH 229
           + R GG+EF       SS ++   +A+ ++  +  S+    +G  +  T+S GI      
Sbjct: 461 LARFGGDEFVILLESVSSRRDVLQVADRVQHAL--SEPFEIAGRKVFTTVSMGIVIGLKQ 518

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
                 ++  AD A+Y AK SG+ R V F        
Sbjct: 519 YNTREEVLQDADIAMYRAKSSGKARYVIFDATMRKRA 555


>gi|256392528|ref|YP_003114092.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Catenulispora acidiphila DSM 44928]
 gi|256358754|gb|ACU72251.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Catenulispora acidiphila DSM 44928]
          Length = 828

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 11/174 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYF 139
              L +       +++ +  D L+GL N +  +S +    E       +L+++F D+D F
Sbjct: 339 SRDLTDRRRIEEALAEQAVRDPLTGLANRTLLVSRISEAIEYSGGADDRLAVLFLDLDRF 398

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K +ND+ GH  GD+++A ++D+L         V R GG+EF       +   EAA +A  
Sbjct: 399 KLVNDSLGHAAGDELLAAVADRLRKAVRRGDLVARFGGDEFVVLCENVAGHAEAASIAQR 458

Query: 199 LRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSG 251
           +   +   +    +G  +H+  S GIA        +  ++  AD A+Y AK  G
Sbjct: 459 VIDCL--IRPFDCAGKPMHVRTSIGIALAHGPDTTVDELLRDADAAMYQAKSDG 510


>gi|254507527|ref|ZP_05119661.1| PAS fold family protein [Vibrio parahaemolyticus 16]
 gi|219549597|gb|EED26588.1| PAS fold family protein [Vibrio parahaemolyticus 16]
          Length = 692

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 7/171 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            + + ID L+GL N   F   L    +    L +++ DID FK IND+ GH +GDKVI  
Sbjct: 263 QEDAHIDSLTGLYNRFGFTKRLEQLIQNDTPLIMLYLDIDNFKNINDSLGHHIGDKVIKE 322

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSI 216
           +S +L  +      +G LGG+EF        + + A +L+  +  +I  +Q       S 
Sbjct: 323 VSSRLKRLLPQQAVLGHLGGDEFGLILPEPENNRMAEMLSERIISLI--NQPFDLHHFSK 380

Query: 217 HITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            +  S G +A          ++  AD A+Y AK  GRNR++ F+D  N   
Sbjct: 381 RLACSIGSVAYPGDGNDARILLQNADTAMYEAKDRGRNRLIKFNDQMNKEA 431


>gi|15642222|ref|NP_231855.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|9656782|gb|AAF95368.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
          Length = 512

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 14/215 (6%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           F +YI +       + +    +L  ++I+  + LG +  + +        R+  ++  D 
Sbjct: 303 FQWYIIVEQKDEFNHDIWFKATLGNLAISAFVALGVLGLAQMS-FRGYQKRLEDMAVRDK 361

Query: 109 LSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+G  N   F              +  LS+   D+D+FKQ+NDN+GHP GD V+  +   
Sbjct: 362 LTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPAGDLVLQRVVAL 421

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                     + R GGEEF       ++QEA      +R  I              +T+S
Sbjct: 422 CQRHIAQVGTLCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMHA------SQPQVTVS 475

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ +    E +  +  RADQA+Y AK  GRN+VV
Sbjct: 476 IGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 510


>gi|119773670|ref|YP_926410.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119766170|gb|ABL98740.1| response regulator receiver protein [Shewanella amazonensis SB2B]
          Length = 392

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/197 (30%), Positives = 103/197 (52%), Gaps = 10/197 (5%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYN 126
           ++I + L LG ++ +++  +      + QL+ ID L+G  N  A               +
Sbjct: 193 LAIFVFLSLGTMACAMMV-IRRQELELRQLTTIDPLTGWFNRRALNDIAVREFERSARTS 251

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
            +L ++  DID+FK+IND +GH  GD+ +  +++   ++     ++ R GGEEF     G
Sbjct: 252 SELGLLVLDIDHFKKINDTYGHVDGDEALKHVTNTCALLLRGYDYLFRFGGEEFVILLPG 311

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALY 245
           S  +    LAN LR  I++  + +     + +TIS G+A+R    +    I+ RAD ALY
Sbjct: 312 SDHECTRKLANRLRLKIQSEPVTLGQD-RVALTISIGVAQRRERDQSWLQILERADSALY 370

Query: 246 VAKKSGRNRVVCFSDIE 262
            AK+SGR+RV   + +E
Sbjct: 371 HAKQSGRDRVAFHNGLE 387


>gi|158333299|ref|YP_001514471.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158303540|gb|ABW25157.1| diguanylate cyclase (GGDEF domain) [Acaryochloris marina MBIC11017]
          Length = 343

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 83/183 (45%), Gaps = 11/183 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
            +  EL  +   + +L+ ID L+ + N   F          L   +E LS++  D+DYFK
Sbjct: 143 RVEAELAKANASLHRLAHIDGLTQVANRYRFDQDMEQVWRRLQRDHEPLSLILCDVDYFK 202

Query: 141 QINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND++GH VGD  +  ++  +   V      V R GGEEFA     +  Q A  +A  +
Sbjct: 203 LFNDHYGHQVGDDCLRQVALAIQKAVHRPDDLVARYGGEEFAIVLPSTHAQGAEQVALGI 262

Query: 200 RKIIENSQINIS-SGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              I    I    S  S  IT+S GIA      ++ +  +I   D+ALY AK+ GRN   
Sbjct: 263 LSKIAELNIPHEFSTVSPQITLSLGIATVIPKSEQSLDGLIELTDKALYRAKEEGRNTYC 322

Query: 257 CFS 259
              
Sbjct: 323 HHD 325


>gi|42527191|ref|NP_972289.1| GGDEF domain-containing protein [Treponema denticola ATCC 35405]
 gi|41817615|gb|AAS12200.1| GGDEF domain protein [Treponema denticola ATCC 35405]
          Length = 987

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 108/225 (48%), Gaps = 18/225 (8%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLLLGY-ISGSILKE----LFISYNRISQLSR 105
           F++  TP   + YIL+    L  ++  I+ L  Y I+   L++    L  +  +++ LS 
Sbjct: 766 FWLS-TPMIAV-YILIFA-GLTFLACRINRLFQYKIANKKLQQEQKDLISANEQLTVLST 822

Query: 106 IDCLSGLLNHSAFI---SSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+G+ N          L        + +S++  DID FKQ ND +GH  GD V+  +
Sbjct: 823 VDELTGVGNRRQLDTVGKDLWRRGLDNKQPISLIMIDIDLFKQYNDLYGHQAGDNVLRTV 882

Query: 159 SDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +  L         FVGR GGEEF      SS  E   +A  LR  I+N  I  S+     
Sbjct: 883 AQTLQKKLRAKYDFVGRYGGEEFLVLLYNSSASETMKIAEKLRIEIKNLNIEHSAEKDKI 942

Query: 218 ITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +TIS G   +   ++    T++  AD ALY AK+SGR+    +++
Sbjct: 943 LTISLGAYTSVPNNELSYETMLSFADSALYKAKESGRDICKMYTE 987


>gi|330719962|gb|EGG98419.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [gamma proteobacterium IMCC2047]
          Length = 346

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 12/177 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           ++K+L   +  +   +R D L+   N  AF  +L              S+   DID FK 
Sbjct: 173 VVKDLTEEHE-LKSQARTDSLTHANNRRAFDDALLETINRYKRVGTAFSLALIDIDDFKI 231

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH  GD+V+  L+ ++  +F    F  R GGEEFA     ++   A  +    R 
Sbjct: 232 INDTMGHEYGDEVLVRLAQRVAGLFRGRYFFARWGGEEFALIMEATNVDGALEICEKTRA 291

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +E   +      S+ +TIS GIAE   +     ++  AD+ALY +K+ G+N+   +
Sbjct: 292 AVEQLFLP----DSVSVTISLGIAEHREEMGAEQLVDCADKALYQSKQQGKNQTNVY 344


>gi|253998882|ref|YP_003050945.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. SIP3-4]
 gi|253985561|gb|ACT50418.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. SIP3-4]
          Length = 776

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 77/183 (42%), Gaps = 16/183 (8%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNF 146
             + + I +L+  D L+ L N    +  L          +    ++F D+D FK +ND+ 
Sbjct: 336 KKAQDEIERLAYFDALTNLPNRRLLMERLSQALNNSRSSHRIGGLMFIDLDNFKTLNDSR 395

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE------AAILANDLR 200
           GH  GD ++  ++ +L+        V R+GG+EF          E      A+ +A  + 
Sbjct: 396 GHAFGDLLLKEVAARLLRAVRNHDTVARIGGDEFVLLLEDIGRDESAAIQTASQIAEKIL 455

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I +   ++ +      + S GI         +  ++ RAD A+Y  K++GRN    F 
Sbjct: 456 ADI-SLPFDLGNYKH-QCSASIGICMFYRQGMHVEEVLKRADAAMYETKRAGRNNYRFFD 513

Query: 260 DIE 262
           +  
Sbjct: 514 ESM 516


>gi|160900263|ref|YP_001565845.1| diguanylate cyclase [Delftia acidovorans SPH-1]
 gi|160365847|gb|ABX37460.1| diguanylate cyclase [Delftia acidovorans SPH-1]
          Length = 392

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/268 (22%), Positives = 113/268 (42%), Gaps = 27/268 (10%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLF--------YIGL 55
            L+  L +W    ++  +      +  F +F   F    +++              ++G+
Sbjct: 131 GLQLALPLWRLPRRHPCTGWDRLLLWVFVVFALSFFVRTLWVTPRAASVSASAAGEWLGI 190

Query: 56  TPFYGLEYILVENLSLVIISITISLL-LGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           +  +     +   LSL++  +  ++L L       ++EL    +R       D L+GLLN
Sbjct: 191 SSSW-----MALQLSLLVFGLLFAMLFLAAAVRDTVQELHEERDR-------DPLTGLLN 238

Query: 115 HSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
             AF  ++            +++  D+D+FK++ND +GH  GD+V+   +  L+      
Sbjct: 239 RRAFKEAVQRRLAEQPQLSAAVLVCDLDHFKRVNDGWGHAAGDEVLQRFARLLLRSTRQQ 298

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
             V R GGEEF A    +    A  +   ++  +     +      I IT S G+A    
Sbjct: 299 DLVARFGGEEFVALLPHADPLAAQWITRRIQTQLRLMGFSALPD-DIRITASFGVAWMAQ 357

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVC 257
            + +   + RAD  LY AK++GR+RV  
Sbjct: 358 GQTLEQALARADAMLYEAKRAGRDRVRL 385


>gi|326404458|ref|YP_004284540.1| hypothetical protein ACMV_23110 [Acidiphilium multivorum AIU301]
 gi|325051320|dbj|BAJ81658.1| hypothetical protein ACMV_23110 [Acidiphilium multivorum AIU301]
          Length = 719

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 12/179 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144
           E       +S+L+  D L+GL N   F + L    E       +++++F D+D FKQIND
Sbjct: 268 ERERYAAALSRLASTDPLTGLYNRPTFTARLAGRAEGSVGAPGRVALLFIDLDSFKQIND 327

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH +GD+V+   ++++  V G    V R GG+EF  A      +EA   A  L   IE
Sbjct: 328 LRGHEMGDQVLRQTAERVARVIGATGDVARWGGDEFLVALPDCGGEEALRHAERL---IE 384

Query: 205 NSQINISSGPSI-HITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  I+ G  +  +  S G+A      +   ++I  AD A+Y AK+ G++R   F  +
Sbjct: 385 AIKTPITVGADVCRVEASVGVALYPDNGDTADSVIRAADVAMYAAKREGKSRAKRFDPV 443


>gi|309388474|gb|ADO76354.1| diguanylate cyclase [Halanaerobium praevalens DSM 2228]
          Length = 843

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 5/187 (2%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKLSIVFFDI 136
           I  L   I  SI   L  ++ ++ +LS  D L+ L NHS F   L     EK S+   DI
Sbjct: 660 IRTLANQIRVSIRNAL--NHQKVKKLSVTDGLTKLYNHSYFDQELAKKDGEKYSVAILDI 717

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK  ND +GH  GD+V+  LS+ L         V R GGEEF        ++    + 
Sbjct: 718 DNFKDFNDLYGHQAGDQVLKKLSELLKSAVRQKDIVARYGGEEFVIYFSIIEQEILLQVI 777

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             L + I N ++       + +T+S GIA      +   ++I +AD ALY+AK SGR++ 
Sbjct: 778 KRLMEKIRNLEVCFED-KKLGVTVSMGIAINKSGNDSAESLIKKADNALYIAKGSGRDQF 836

Query: 256 VCFSDIE 262
               +I+
Sbjct: 837 KFHKNID 843


>gi|24215632|ref|NP_713113.1| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
 gi|45657009|ref|YP_001095.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24196791|gb|AAN50131.1| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
 gi|45600246|gb|AAS69732.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 320

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 22/194 (11%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEK-LSIVFFDIDYFKQ 141
           +  +L  + N++ + +  D L+ L N  +F         LG + EK +S++  D+D+FK 
Sbjct: 127 LASDLEEANNKLLEQASTDPLTKLKNRRSFNEEINHLIRLGQHQEKSISLMMIDVDHFKD 186

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            ND FGHP GD+++  L++       +   V R GGEEF  A   ++E++A  +A  L  
Sbjct: 187 YNDKFGHPAGDRILIRLAEVFTETLRSCDLVARFGGEEFVVALSDTNEEKAVEVAERLMA 246

Query: 202 IIENSQINISSGPSIHITISAGIAE-------RCHKEPIST-IIYRADQALYVAKKSGRN 253
            ++      S      ITIS GI           +   +ST II  AD+ALY +K +GRN
Sbjct: 247 NVKKKSWENS-----PITISVGITTLNFNGPVPIYHTDLSTGIIEDADRALYRSKANGRN 301

Query: 254 RVVCFSDI--ENNT 265
           +    S +  EN T
Sbjct: 302 QATHSSQLKTENQT 315


>gi|126172894|ref|YP_001049043.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|217974751|ref|YP_002359502.1| diguanylate cyclase [Shewanella baltica OS223]
 gi|125996099|gb|ABN60174.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|217499886|gb|ACK48079.1| diguanylate cyclase [Shewanella baltica OS223]
          Length = 302

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 79/179 (44%), Gaps = 11/179 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
            S + +      ++ QLS  D L+GL N       L         +    SI+  D+D+ 
Sbjct: 122 ASNISQRHELELQLRQLSDTDQLTGLYNRRRLERDLTVQFDTFQRHRTPTSILILDLDHL 181

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND  GH  GDK+I  +++     F       R GG+EF  A  G  + +A   A  L
Sbjct: 182 KSINDQLGHHAGDKIIIAVAETCRTQFRKTDSAYRFGGDEFVIALPGVEQSQAVKFAEYL 241

Query: 200 RKII-ENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
                   Q +  +G  +  T+S G+A            + RAD ALY AK++G+NRV+
Sbjct: 242 CDCFYSALQQHAVNG--LFATVSIGVASIEALDTSYEDTLKRADAALYQAKRNGKNRVI 298


>gi|320334720|ref|YP_004171431.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
 gi|319756009|gb|ADV67766.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
          Length = 635

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 109/255 (42%), Gaps = 24/255 (9%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGL----TPFYGLEYILVENLSLVIISITISLLL 82
           F I      S F+  V     + L + GL    T  Y   +  V + + V+ ++    L 
Sbjct: 111 FWIPALYVLSFFVPNVRIARTVSLAFFGLILAGTALYTARWATVPSATPVLFALLQLNLA 170

Query: 83  GY------ISGSILKELFISYN----RISQLSRIDCLSGLLNHSAFISSLGSYNE----- 127
                   +S    KE +         + +L+  D L+ L N    +  L    +     
Sbjct: 171 NLTLLALTVSFIGFKERYARAEVRSETLQRLAYTDLLTSLPNRLQLMQELHRTLDHAQLS 230

Query: 128 --KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              +S+++ DID FK  ND  GH  GD V+  ++++L  +      V RL G+EF  A  
Sbjct: 231 GLPVSLLYIDIDGFKSANDTLGHEAGDVVLREIAERLRALSRPSDVVARLTGDEFVVALW 290

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
            +   +A  LA  + +  + ++    +G ++ IT S GI+    H     T++ +AD A+
Sbjct: 291 NTDVHDAERLAARVLQ--DLTRPIPYAGQTLLITSSIGISNAPLHSTDAGTLLRQADSAM 348

Query: 245 YVAKKSGRNRVVCFS 259
           Y  K SG+N V  ++
Sbjct: 349 YQVKHSGKNAVRLYA 363


>gi|302340686|ref|YP_003805892.1| diguanylate cyclase [Spirochaeta smaragdinae DSM 11293]
 gi|301637871|gb|ADK83298.1| diguanylate cyclase [Spirochaeta smaragdinae DSM 11293]
          Length = 398

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 68/254 (26%), Positives = 112/254 (44%), Gaps = 31/254 (12%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYI----GLTPFYGLEYILVENLSLVIISITIS---L 80
           +++F  + S  +  ++ ++ + L  I     ++  +  +  ++ N  L  I   I+    
Sbjct: 147 ILFFPYWKSFLLYALLCLSAVTLIPIVHPQAMSAVFAAD--IISNGMLAWIVSMINYRNF 204

Query: 81  LLGYISGSILKE----LFISYNR-------ISQLSRIDCLSGLLNHSAFISSLG------ 123
           +  + +  I++E    L   +++       + ++S  D L+GL N       L       
Sbjct: 205 VTNFRNKKIIEEKNRDLCEKHDQIKRINIELKRISVKDELTGLYNRRKIDDLLKHEWERT 264

Query: 124 -SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
             Y  K +++  DID+FK+IND +GH  GD V+  LS  L+         GR GGEEF  
Sbjct: 265 IRYKTKFTVIMMDIDHFKKINDTYGHDAGDLVLKKLSRILLDNIRKADSCGRWGGEEFLI 324

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
               +   ++ ILA   R  I   +I         +T S GIA       I T++  AD 
Sbjct: 325 ICQEADCHQSLILAERFRDTISKHRIPDLP----SVTASFGIASSEESSSIQTLLKAADS 380

Query: 243 ALYVAKKSGRNRVV 256
            LY AK  GRNRVV
Sbjct: 381 RLYEAKLQGRNRVV 394


>gi|163750165|ref|ZP_02157407.1| sensory box protein [Shewanella benthica KT99]
 gi|161330021|gb|EDQ01005.1| sensory box protein [Shewanella benthica KT99]
          Length = 1432

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 90/184 (48%), Gaps = 7/184 (3%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQIND 144
            S +         + +L+  D L+ L N S+ + +LG     +   +++  D+D FK+IND
Sbjct: 991  SDISRRKQQEEELRKLTNNDLLTNLPNRSSLMVTLGNLVKRDSHHTLMVLDLDNFKKIND 1050

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
            + GH VGD+++  ++ ++         + RLGG+EFA     +     +A++AN + +  
Sbjct: 1051 SLGHQVGDELLIKVARRIEAAVPYHTSIYRLGGDEFAILVDDNPDIGSSAVIANSVIEAF 1110

Query: 204  ENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDIE 262
              +   ++S   + + +S GI      +     ++ +AD A+Y AK +G NR   +S+  
Sbjct: 1111 -VTPFELTSDKVV-VGMSIGIVLYPEDDQNEQALLRKADIAMYHAKSAGGNRYQFYSESL 1168

Query: 263  NNTC 266
            N   
Sbjct: 1169 NRNA 1172


>gi|158522458|ref|YP_001530328.1| diguanylate cyclase with PAS/PAC sensor [Desulfococcus oleovorans
           Hxd3]
 gi|158511284|gb|ABW68251.1| diguanylate cyclase with PAS/PAC sensor [Desulfococcus oleovorans
           Hxd3]
          Length = 409

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 10/171 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
              +  L+  D L+GL N  A    L         + ++ +++F D+D FK +ND +GH 
Sbjct: 229 EKELLYLASHDHLTGLYNRGALFEKLRETIAYAKRFRQRCALLFLDLDNFKTVNDTWGHE 288

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+   + +L  +     +V R GG+EF      S       +A  +   I     +
Sbjct: 289 TGDRVLKEAAFRLTGLLRETDYVCRHGGDEFTIILSNSKNMNPPKVAQKVIDAISR-PFD 347

Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +       IT S GI+      + +  ++  AD+A+Y AK   ++R +C++
Sbjct: 348 VGENKIAAITTSIGISVYPDDSDTMEDLVKYADKAMYRAKDR-KDRYICYN 397


>gi|253997836|ref|YP_003049899.1| PAS/PAC/GAF sensor-containing diguanylate cyclase [Methylovorus sp.
           SIP3-4]
 gi|253984515|gb|ACT49372.1| diguanylate cyclase with PAS/PAC and GAF sensors [Methylovorus sp.
           SIP3-4]
          Length = 450

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 13/181 (7%)

Query: 81  LLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           LL ++S  I    E      R+ QL++ D L+ L N     + L             L++
Sbjct: 264 LLQFVSTQIATAIERQKMQARLQQLAQYDALTSLPNRELLTNKLEAALRSAEREQRHLAL 323

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQ 190
           ++ D+D FKQ+ND+ GH  GD ++  ++ +L +       V RLGG+EF       SS  
Sbjct: 324 LYLDLDKFKQVNDSLGHDAGDTLLQEVAARLKLSMRETDMVARLGGDEFVVLLQDISSPD 383

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
           +AA++   LR ++   Q     G  + I  S GIA    H +    ++  AD+A+Y  K 
Sbjct: 384 QAAMVVEKLRGVLA--QPFEIDGHRLAICPSIGIAFYPDHGQDRHALLKHADKAMYREKH 441

Query: 250 S 250
            
Sbjct: 442 H 442


>gi|209965575|ref|YP_002298490.1| sensory box-containing diguanylate cyclase, putative
           [Rhodospirillum centenum SW]
 gi|209959041|gb|ACI99677.1| sensory box-containing diguanylate cyclase, putative
           [Rhodospirillum centenum SW]
          Length = 570

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 10/186 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-----SI 131
            +S +  ++  ++ +  +    R+  LS  D L+GL N   F+  L    E+      ++
Sbjct: 362 MVSAIADHVGVAVAQARY--QERLKTLSERDGLTGLYNRRTFMELLEQRLERHRGGSSAL 419

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           ++FD+D FK +ND  GH  GD V+  +   LV +        RLGG+EF        E +
Sbjct: 420 LYFDLDNFKAVNDLLGHTAGDGVLQAVGTLLVRLARPGDLTARLGGDEFVLWIERVDEAQ 479

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKK 249
           A  +A+ L +        +S+ P   + +S G+A       EP   ++ R D A+Y AK+
Sbjct: 480 ALRVADRLLREAAEFLRPLSAAPDRPLGVSIGVALYAGGGGEPAQGLLDRGDHAMYAAKR 539

Query: 250 SGR-NR 254
            G+ NR
Sbjct: 540 QGKGNR 545


>gi|126659426|ref|ZP_01730560.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Cyanothece sp. CCY0110]
 gi|126619262|gb|EAZ89997.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Cyanothece sp. CCY0110]
          Length = 643

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 17/189 (8%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQ 141
           + E      ++   +  D L+GL N +  +  L           N + +++F D+D FK 
Sbjct: 190 ITEHKQIKEQLRHDALHDNLTGLPNRTLLMDRLEQGLKRCQRDDNRRFAVLFLDLDRFKL 249

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           IND+ GH  GD+++  LS +          + RLGG+EF       S+  EA  +A+ + 
Sbjct: 250 INDSLGHLTGDQLLIVLSHRFSQCLRAEDTLSRLGGDEFVILLENLSNIDEAIAIADRIH 309

Query: 201 KIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNR 254
            I++  +  +     I I++S GI          + + ++ ++  AD A+Y AK  G   
Sbjct: 310 NILK--EPILLQSEEIFISVSIGIVFGGEKPVYNNPDQVAELLRDADTAMYRAKAKGPGT 367

Query: 255 VVCFSDIEN 263
              F    +
Sbjct: 368 SEVFQPSMH 376


>gi|91202543|emb|CAJ72182.1| hypothetical protein kustd1437 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 486

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 90/187 (48%), Gaps = 13/187 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           + + ++   I  +I+++   +   I  ++  D L+ L N + F + L           + 
Sbjct: 301 MLLRIVSEIIGNAIVRKRSEAC--IQHMAYHDALTNLPNRNLFRARLEMAILQAKRNKKM 358

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            +++  D+D FK +ND+FGH +GD ++   + ++         V R GG+EF       +
Sbjct: 359 AAVMALDLDGFKAVNDSFGHHMGDLLLKEAAVRMKECVRECDTVARFGGDEFMVILTNIN 418

Query: 189 -EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYV 246
             ++A  +A  L  ++  SQ  + +   I IT+S GI+        +  +I +AD ALY 
Sbjct: 419 HREDANHVAKKLLGLL--SQKFLINNDKIGITVSIGISLYPADGNDMEDLIKKADNALYC 476

Query: 247 AKKSGRN 253
           +KK G+N
Sbjct: 477 SKKEGKN 483


>gi|90419568|ref|ZP_01227478.1| response regulator [Aurantimonas manganoxydans SI85-9A1]
 gi|90336505|gb|EAS50246.1| response regulator [Aurantimonas manganoxydans SI85-9A1]
          Length = 454

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 9/171 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG----SYNEK---LSIVFFDIDYFKQINDN 145
           L  S      ++  D L+GL N     + L        E     S++  DID+FK+IND 
Sbjct: 279 LRRSVEETLAMALSDPLTGLHNRRFMETHLDKAVVRARETGVGFSVLMADIDHFKRINDG 338

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD V+   + +L           R GGEEFA   +G+ E  A  +A+ +R+ + +
Sbjct: 339 WGHGAGDLVLKDFARRLSGSLRASDLACRFGGEEFAVLMIGADETTAMAVADRIRRSVCD 398

Query: 206 SQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
               I +G  + +T+S G+A     ++  +T+I RADQALY AK+ GRNRV
Sbjct: 399 LPFQI-AGELLTVTVSEGLAVFDARRDNAATLIERADQALYEAKRDGRNRV 448


>gi|71906426|ref|YP_284013.1| GGDEF [Dechloromonas aromatica RCB]
 gi|71846047|gb|AAZ45543.1| GGDEF protein [Dechloromonas aromatica RCB]
          Length = 585

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 8/178 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDY 138
           S + ++EL       S L R D L+G LN                 ++  L +   DID 
Sbjct: 407 SEARIQELERELVASSDLVRHDQLTGTLNRRGLEEIFTKEAARATRHDTALCVALIDIDN 466

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++ND+ GH  GD+ +  L+            V R GGEEF      +S  +AAI    
Sbjct: 467 FKKLNDSMGHDTGDQALIHLATICRETLRPQDTVARYGGEEFIILLPETSLDDAAIALTR 526

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           L++ +   +  +     + IT SAG+ +    +  +T+I RAD+A+Y AKK+G+NRV 
Sbjct: 527 LQREL-TKKFFLHGNEKVLITFSAGVTQMLPNDTQATVIKRADEAMYQAKKTGKNRVT 583


>gi|76819816|ref|YP_337542.1| EAL/GGDEF domain-containing protein [Burkholderia pseudomallei
           1710b]
 gi|167819254|ref|ZP_02450934.1| EAL/GGDEF domain protein [Burkholderia pseudomallei 91]
 gi|167914364|ref|ZP_02501455.1| EAL/GGDEF domain protein [Burkholderia pseudomallei 112]
 gi|254193156|ref|ZP_04899591.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei S13]
 gi|254263037|ref|ZP_04953902.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1710a]
 gi|254300138|ref|ZP_04967584.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 406e]
 gi|76584289|gb|ABA53763.1| EAL/GGDEF domain protein [Burkholderia pseudomallei 1710b]
 gi|157810431|gb|EDO87601.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 406e]
 gi|169649910|gb|EDS82603.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei S13]
 gi|254214039|gb|EET03424.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1710a]
          Length = 688

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/215 (30%), Positives = 100/215 (46%), Gaps = 15/215 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRIS----QLSRIDCLSGLLNHSAFIS 120
           L   ++L  ++I I  L+          L  S +R+S    +++  D L+ L N      
Sbjct: 214 LAATVALFTVAILIVALILSHFDVRTTLLAGSVSRLSGQIVRMAAFDTLTDLPNRHTLNE 273

Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            LG           KL+I+F D+D FK IND+ GHP GD+V+   S +L+        V 
Sbjct: 274 HLGRALAAARARGGKLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVA 333

Query: 174 RLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           RLGG+EF       SS+ EAA +A D+ + +   + N   G ++ +T S GIA      +
Sbjct: 334 RLGGDEFVVLLESVSSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGD 391

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              T++  AD A+Y AK+ GR     F    +   
Sbjct: 392 TADTLLRHADAAMYAAKRGGRCTYRFFEATMDEAA 426


>gi|15595487|ref|NP_248981.1| hypothetical protein PA0290 [Pseudomonas aeruginosa PAO1]
 gi|218889030|ref|YP_002437894.1| putative sensory box/GGDEF domain protein [Pseudomonas aeruginosa
           LESB58]
 gi|254237477|ref|ZP_04930800.1| hypothetical protein PACG_03552 [Pseudomonas aeruginosa C3719]
 gi|254243387|ref|ZP_04936709.1| hypothetical protein PA2G_04201 [Pseudomonas aeruginosa 2192]
 gi|9946134|gb|AAG03679.1|AE004467_1 hypothetical protein PA0290 [Pseudomonas aeruginosa PAO1]
 gi|126169408|gb|EAZ54919.1| hypothetical protein PACG_03552 [Pseudomonas aeruginosa C3719]
 gi|126196765|gb|EAZ60828.1| hypothetical protein PA2G_04201 [Pseudomonas aeruginosa 2192]
 gi|218769253|emb|CAW25013.1| putative sensory box/GGDEF domain protein [Pseudomonas aeruginosa
           LESB58]
          Length = 323

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
              + +     + + +L+  D L+   N   F  S              L+ +  D+D F
Sbjct: 145 AEDITDKKHMESELQRLATTDVLTQSSNRRYFFDSAEAAFKECRREGIPLAFLLLDVDDF 204

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND FGH VGD+V+  ++             GR+GGEEFA    G  EQ A  +   L
Sbjct: 205 KKINDRFGHQVGDQVLQRIAQSGSAALRRGDLFGRIGGEEFAVLLPGCDEQTARQIGERL 264

Query: 200 RKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++ ++  +       S  IT+S G+   +   E +  +  RAD A+Y AK+ G++ +V 
Sbjct: 265 QREVQRLRFQ-EGEHSFGITVSQGLTVLQADDEGLGALYSRADAAMYSAKRQGKDCIVV 322


>gi|291614482|ref|YP_003524639.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291584594|gb|ADE12252.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 1011

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 91/215 (42%), Gaps = 13/215 (6%)

Query: 64  ILVENLSLVIISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +  E+L++  +      ++ Y++  + +     S   I  L+  D L+ L N       L
Sbjct: 540 VYPEHLTITAVKDAGGNVVNYVATLMDITASKASEEEIRNLAFFDPLTRLPNRRLLQDRL 599

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                      +  +I+F D+D FK +ND  GH +GD ++  ++ +L         V R+
Sbjct: 600 QQALASCGRSGKSGAILFIDLDNFKNLNDTLGHDIGDLLLEKVAIRLSSCVREGDTVARI 659

Query: 176 GGEEFAAAALGSSEQ--EAAILANDL-RKIIENSQINISSG-PSIHITISAGIAERCHK- 230
           GG+EF       S+   +AA     +  KI+ +  +    G  +   + S G        
Sbjct: 660 GGDEFVVMLEDLSDNILDAAEQTESVGSKILASLNVPYQLGIHTYDNSPSIGATLFNDNH 719

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             I  ++ +AD A+Y AKK+GRN +  F      +
Sbjct: 720 NSIDELLKQADIAMYQAKKAGRNTMRFFDPRMQQS 754


>gi|254561654|ref|YP_003068749.1| diguanylate cyclase [Methylobacterium extorquens DM4]
 gi|254268932|emb|CAX24893.1| diguanylate cyclase precursor with GGDEF motif; putative membrane
           protein [Methylobacterium extorquens DM4]
          Length = 405

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/255 (25%), Positives = 109/255 (42%), Gaps = 16/255 (6%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           L+IW   ++ L S  P   ++            + F   I       +P++ +       
Sbjct: 136 LTIWQGRDEPLVSRYPALVLLATYAGLYWIRLPLAFTMPIPASVAIASPWFAI------- 188

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
             L       S+ + ++  ++ KE      R++  +  D L+G+ N  A ++    +   
Sbjct: 189 --LCFAGTLFSVAIAFVFMALTKERAEREQRLA--AETDSLTGIANRRALVAGAERHLAV 244

Query: 129 LSIVF--FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
                  FD+D+FK +ND +GH VGD V+A        +       GR+GGEEFA     
Sbjct: 245 APAALLLFDLDHFKAVNDRYGHSVGDAVLAAFCHVADPLLPPGAVFGRMGGEEFACLLPR 304

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALY 245
             E+ A  +A D+R  I   +      P + I +S G+A        +  ++ RAD ALY
Sbjct: 305 LDERAAMRVAEDVRAAIA--RFAHPDYPELAIRVSVGVAAESQIGGSLDYLLRRADDALY 362

Query: 246 VAKKSGRNRVVCFSD 260
            AK +GR+RVV   +
Sbjct: 363 QAKHAGRDRVVAAGE 377


>gi|222085563|ref|YP_002544093.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
 gi|221723011|gb|ACM26167.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
          Length = 466

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 117/259 (45%), Gaps = 21/259 (8%)

Query: 16  EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIIS 75
           E   E+      ++  ++     I+++  I     F          E ++    S +  +
Sbjct: 189 EGRREATRGLLGLVLMALACDCLISSMSMILLRPSF---------EEALIYRGYSALGYA 239

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEK 128
           + I+  +  +SG +L E    + R   +S  D L+G+LN       L          + K
Sbjct: 240 LLITTAIA-LSGRLLMERAERHWR--TISITDMLTGVLNRRGLQDYLPLVVKKAARGSHK 296

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           ++++ FD+D+FK IND +GH  GD V+A  +             GR+GGEEF A    + 
Sbjct: 297 IAVLLFDLDHFKAINDRYGHQTGDTVLAEFARIGRQFIPESGAFGRMGGEEFIAFIPVAD 356

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVA 247
           + EA  +A  +R  +  + + ++    +  T+S G+A   C       ++  AD+ALY A
Sbjct: 357 QAEAEAIAETVRAEVCRAPL-LAGQSFVSATVSVGLAIMPCGSANWDRLVSAADRALYAA 415

Query: 248 KKSGRNRVVCFSDIENNTC 266
           K++GRN  V F + E +T 
Sbjct: 416 KRAGRNCTVVFGEAEASTA 434


>gi|148261059|ref|YP_001235186.1| diguanylate cyclase/phosphodiesterase [Acidiphilium cryptum JF-5]
 gi|146402740|gb|ABQ31267.1| diguanylate cyclase/phosphodiesterase [Acidiphilium cryptum JF-5]
          Length = 705

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 12/179 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144
           E       +S+L+  D L+GL N   F + L    E       +++++F D+D FKQIND
Sbjct: 254 ERERYAAALSRLASTDPLTGLYNRPTFTARLAGRAEGSVGAPGRVALLFIDLDSFKQIND 313

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH +GD+V+   ++++  V G    V R GG+EF  A      +EA   A  L   IE
Sbjct: 314 LRGHEMGDQVLRQTAERVARVIGATGDVARWGGDEFLVALPDCGGEEALRHAERL---IE 370

Query: 205 NSQINISSGPSI-HITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  I+ G  +  +  S G+A      +   ++I  AD A+Y AK+ G++R   F  +
Sbjct: 371 AIKTPITVGADVCRVEASVGVALYPDNGDTADSVIRAADVAMYAAKREGKSRAKRFDPV 429


>gi|148548688|ref|YP_001268790.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida F1]
 gi|148512746|gb|ABQ79606.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida F1]
          Length = 562

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 89/208 (42%), Gaps = 20/208 (9%)

Query: 70  SLVIISITISLLLGYISGSILK---------ELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           SL  +  T+  L+  ++G + K         E     + +      D L+GL N +    
Sbjct: 85  SLYWVDSTMVPLVDPLTGQVRKYVSIRFDVTEKRQLLHTLQWRVGHDVLTGLPNRAYLSD 144

Query: 121 SL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L             L++   D+D FK +ND +GH VGD ++  ++ +L  +      V 
Sbjct: 145 LLNQALAYSRREGISLAVCMLDLDGFKAVNDGYGHAVGDLLLVEVAQRLKSILRGGDAVA 204

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERC-HKE 231
           RL G+EF        ++     A  L++++       +    ++ ++ S G+       E
Sbjct: 205 RLSGDEFVLILRDVDDEHQLHAA--LQRVLRALAAPCVVREHTLSLSASIGVTLYPQDDE 262

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
              T++  ADQA+YVAK+ GRNR   F 
Sbjct: 263 DADTLVRHADQAMYVAKQRGRNRYHLFD 290


>gi|297537602|ref|YP_003673371.1| diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297256949|gb|ADI28794.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Methylotenera sp. 301]
          Length = 684

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 67/263 (25%), Positives = 109/263 (41%), Gaps = 33/263 (12%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLT-PFYGL-----------EYILVENLS----LVIISI 76
           IFF + +A  + +  I    I LT P  GL           +Y L  NL     L  ++ 
Sbjct: 156 IFFGMILAGALGVYMIRRLQINLTKPIIGLTDSMRQVSNTDDYSLRFNLDSKDELGELAS 215

Query: 77  TISLLLGYISG------SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------- 123
             + +LG I        S L     + +R+ QL+  D ++ L N   F   +        
Sbjct: 216 GFNTMLGKIESHQAKLDSELLRRKHAEDRLQQLAFYDEVTKLPNRHYFKERMEGAVASSI 275

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            Y +   I+  D+D FK +ND  GH V D ++  ++ +L  V  T   + R+GG+EFA  
Sbjct: 276 RYKKLCCIMVIDLDDFKIVNDTLGHNVSDDLLLAVAKRLSNVIRTSDVLCRIGGDEFALV 335

Query: 184 ALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRAD 241
                  +EA  +A  +   +  SQ  +  G  + I  S G++        I  ++  AD
Sbjct: 336 LENILIAEEAIQVAKKIINTL--SQPFVLEGREVFIGASIGVSLCPTDTADIPILLRNAD 393

Query: 242 QALYVAKKSGRNRVVCFSDIENN 264
            A+Y AK  G+N    +     +
Sbjct: 394 TAMYSAKNQGKNSYQMYQPEMES 416


>gi|258514078|ref|YP_003190300.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Desulfotomaculum acetoxidans DSM 771]
 gi|257777783|gb|ACV61677.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Desulfotomaculum acetoxidans DSM 771]
          Length = 1278

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/194 (28%), Positives = 93/194 (47%), Gaps = 8/194 (4%)

Query: 81   LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVF 133
            L+G I +   + E       +  L+  D L+G+ N  +    L    +K++      ++F
Sbjct: 830  LVGAIETIRDITERRNMEKELKYLASHDFLTGIHNRYSLEKCLEQAVKKVAEGVKSALLF 889

Query: 134  FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
             D+D FK +ND  GH  GD+++  LS  +         + R GG+EFA      + +EA 
Sbjct: 890  IDLDNFKLVNDTLGHAAGDQLLKTLSATIGSFLQGGHRIFRFGGDEFAVLLENVTVEEAG 949

Query: 194  ILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            + A +LR +IE  +  ++   +  ++TIS GI           I+  AD +LY AK+ GR
Sbjct: 950  MTAENLRLLIEEHEFCLTMYKTCFNMTISIGIVIIDGILDFHKILAYADNSLYKAKEGGR 1009

Query: 253  NRVVCFSDIENNTC 266
            NRVV     ++ T 
Sbjct: 1010 NRVVFAQAGDDVTA 1023


>gi|153832862|ref|ZP_01985529.1| ggdef family protein [Vibrio harveyi HY01]
 gi|148870785|gb|EDL69684.1| ggdef family protein [Vibrio harveyi HY01]
          Length = 480

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 102/214 (47%), Gaps = 5/214 (2%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            I   +I +   Y      +   +L+I ++     L        ++L ++  ++ +L+  
Sbjct: 253 RILSRWIHVKTVYPAYLAPLAVFALIIAAMFHIFSLKRTVALRTRQLTVANQQLFELTLT 312

Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ L N    I  L +       L+++ FDID FK IND FGH VGD+ I  +++   
Sbjct: 313 DPLTKLYNRRHLIERLATLSNVRRNLTVMVFDIDDFKSINDQFGHVVGDQAIIAVANTAR 372

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
            V    M + R+GGEEFA      S +EA +LA  +   +  S + +  G +I ++IS G
Sbjct: 373 TVIDERMTLARIGGEEFALVTASLSAEEAEVLARTICTQVHCSPVTL-DGQTISVSISLG 431

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            A     +   ++   ADQ +Y  K +G+NR V 
Sbjct: 432 CAYYPKFDEQPSL-QDADQLMYRGKANGKNRAVF 464


>gi|125973398|ref|YP_001037308.1| diguanylate cyclase [Clostridium thermocellum ATCC 27405]
 gi|256004374|ref|ZP_05429355.1| diguanylate cyclase [Clostridium thermocellum DSM 2360]
 gi|281417600|ref|ZP_06248620.1| diguanylate cyclase [Clostridium thermocellum JW20]
 gi|125713623|gb|ABN52115.1| diguanylate cyclase [Clostridium thermocellum ATCC 27405]
 gi|255991658|gb|EEU01759.1| diguanylate cyclase [Clostridium thermocellum DSM 2360]
 gi|281409002|gb|EFB39260.1| diguanylate cyclase [Clostridium thermocellum JW20]
 gi|316940368|gb|ADU74402.1| diguanylate cyclase [Clostridium thermocellum DSM 1313]
          Length = 376

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 68/237 (28%), Positives = 116/237 (48%), Gaps = 18/237 (7%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            FSI + TV  IA +    IG   F  L   ++ +  +++++  +S+++  +     K+ 
Sbjct: 132 IFSIILYTVSSIA-VKADNIGELNFLKL---IIRDFFILLVAYGVSMVILEV-----KKY 182

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNF 146
              + R  +L+R D L+GL N       L           + L+++ FDID FK+ ND +
Sbjct: 183 DEMHQREFKLARTDKLTGLANRHMLDQKLEEEALYCEYSKKPLNVLMFDIDDFKKFNDTY 242

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GDK+++   D +           R GGEEF         ++A  +A+ +R  +E  
Sbjct: 243 GHIWGDKLLSLFGDIIKQSIRKTDMAFRYGGEEFMVLIRDLDLEKAKCVADRIRCQLEKQ 302

Query: 207 QINISSGPSIH-ITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            +    G ++   T+S GIA+   H + I  ++  AD+ALY AKK G+N VV + +I
Sbjct: 303 NLFSDEGHNMGKATVSCGIAQFPTHSDDIKKVVDYADRALYYAKKIGKNIVVSYDEI 359


>gi|153213789|ref|ZP_01948997.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|124115713|gb|EAY34533.1| GGDEF family protein [Vibrio cholerae 1587]
          Length = 512

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 14/215 (6%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           F +YI +       + +    +L  ++I+  + LG +  + +        R+  ++  D 
Sbjct: 303 FQWYIIVEQKDEFNHDIWFKATLGNLAISAFVALGVLGLAQMS-FRGYQKRLEDMAVRDK 361

Query: 109 LSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+G  N   F              +  LS+   D+D+FKQ+NDN+GHP GD V+  +   
Sbjct: 362 LTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPAGDLVLQRVVAL 421

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                     + R GGEEF       ++QEA      +R  I              +T+S
Sbjct: 422 CQRHIAQVGTLCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMHA------SQPQVTVS 475

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ +    E +  +  RADQA+Y AK  GRN+VV
Sbjct: 476 IGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 510


>gi|170721840|ref|YP_001749528.1| diguanylate cyclase [Pseudomonas putida W619]
 gi|169759843|gb|ACA73159.1| diguanylate cyclase [Pseudomonas putida W619]
          Length = 522

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 11/183 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           +I + L  ++  +  L+  D L+GL N           I         +++V  D+D+FK
Sbjct: 332 AIERALHQAHQTLRSLALTDSLTGLGNRRRLDAVLDAEIRRARRLGHAVALVMIDLDFFK 391

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GHP GD+ +   ++ L  V         R GGEEF      +  + A  + +++
Sbjct: 392 LYNDRYGHPAGDQCLRRFAELLQQVLKRPADLAVRYGGEEFTVLLPDTDVKGAEQVVDEI 451

Query: 200 RKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +++    I  +  P   ++ SAGIA            +++  AD ALY AK+ GR+   
Sbjct: 452 LQLLRRLMIEHAGSPLGLVSASAGIAVGHPAVDASSPESLMSAADGALYQAKRQGRDGYA 511

Query: 257 CFS 259
              
Sbjct: 512 VAD 514


>gi|262158980|ref|ZP_06030092.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|262169339|ref|ZP_06037031.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|262022152|gb|EEY40861.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|262029165|gb|EEY47817.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
          Length = 960

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 22/228 (9%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI------------- 95
           F +   + P +     ++    ++ +++ +SL++  I     +EL++             
Sbjct: 723 FSYVFIIEPHWWQRKEVIVMAGMLFLALAVSLVMWRIRILKRRELYLVEQVALQTQKLRL 782

Query: 96  SYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
              +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIND + H
Sbjct: 783 QAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIALLDIDHFKQINDRYSH 842

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+ I  +S +L+   G    V R GGEEF    +G   ++A      LR  IE   +
Sbjct: 843 IIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVG-DPKQAWGYFEKLRCKIEQVDL 901

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  + P +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 902 SAVA-PGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 948


>gi|91793938|ref|YP_563589.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91715940|gb|ABE55866.1| GGDEF domain [Shewanella denitrificans OS217]
          Length = 621

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 13/197 (6%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA-------F 118
           +  LSL +  + +++LLG++       L+ S       S+ D L+G+ + S         
Sbjct: 428 ITRLSLWLFVLLVAILLGFLGF-----LYQSRRFFKHRSQTDFLTGIASRSFTMEEGAKA 482

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           + +     + L++V  DID FK IND++GH +GD  I  ++ +          +GR+GGE
Sbjct: 483 LETCHKLKQPLAVVMLDIDNFKHINDSYGHDIGDMAIRAVAQRAKHWLKRNDILGRIGGE 542

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EF      +++QEA ++A  LR  I N ++    G  +  +IS G+A    ++  +  + 
Sbjct: 543 EFLLVLPNNNQQEALLIAERLRVSI-NEKLFKFKGVELKFSISLGVALSKPQQGFNEQVK 601

Query: 239 RADQALYVAKKSGRNRV 255
            AD ALY AK +GRN V
Sbjct: 602 NADLALYQAKNAGRNCV 618


>gi|116054017|ref|YP_788459.1| sensory box GGDEF domain-containing protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115589238|gb|ABJ15253.1| putative sensory box/GGDEF domain protein [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 323

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
              + +     + + +L+  D L+   N   F  S              L+ +  D+D F
Sbjct: 145 AEDITDKKHMESELQRLATTDVLTQSSNRRYFFDSAEAAFKECRREGIPLAFLLLDVDDF 204

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND FGH VGD+V+  ++             GR+GGEEFA    G  EQ A  +   L
Sbjct: 205 KKINDRFGHQVGDQVLQRIAQSGSAALRRGDLFGRIGGEEFAVLLPGCDEQTARQIGERL 264

Query: 200 RKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++ ++  +       S  IT+S G+   +   E +  +  RAD A+Y AK+ G++ +V 
Sbjct: 265 QREVQRLRFQ-EGEQSFGITVSQGLTVLQADDEGLGALYSRADAAMYSAKRQGKDCIVV 322


>gi|188990827|ref|YP_001902837.1| Putative signal transduction protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732587|emb|CAP50781.1| Putative signal transduction protein [Xanthomonas campestris pv.
           campestris]
          Length = 508

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/200 (26%), Positives = 89/200 (44%), Gaps = 12/200 (6%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN 126
           + + + ++   + L +G      L+ +  +  R+S    +D L+G+ N  AF   L    
Sbjct: 306 QRIIIAVLGFVLLLAVGIWLDLQLRRMHRNEARLSSEVWVDALTGIANRRAFDHRLSEAL 365

Query: 127 E-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGE 178
           +        LS++  D+D+FK  ND +GH  GD  +  ++  +      +     R GGE
Sbjct: 366 QDAVHTQAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGTIAGCARRSDDIAARYGGE 425

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKE---PIS 234
           EF      +    A  LA+ +R  +    +   + P S H+T+S G A     E      
Sbjct: 426 EFGMILPHTDVAGALRLADAIRTAVAELGLMHLTSPTSAHVTVSVGAATFEPGETPLTPD 485

Query: 235 TIIYRADQALYVAKKSGRNR 254
            I+  AD ALY AK+ GR+R
Sbjct: 486 AIVRDADGALYRAKQGGRDR 505


>gi|158334441|ref|YP_001515613.1| diguanylate cyclase/phosphodiesterase [Acaryochloris marina
           MBIC11017]
 gi|158304682|gb|ABW26299.1| diguanylate cyclase/phosphodiesterase with PAS domain
           [Acaryochloris marina MBIC11017]
          Length = 891

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 11/179 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           I+ E   +  +I +L+  D L+GL + + F  +L            +L +++ D+D FK 
Sbjct: 436 IVMERDQAQKKIRELAFNDSLTGLASRAHFYQNLEVAIKRSDRNASRLGLLYIDLDNFKG 495

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLR 200
           +ND+ GH  GD ++  +  +L  V     FV RL G+EF        +  AA  +A    
Sbjct: 496 VNDSLGHDAGDLLLREIGHRLQRVARDIDFVARLSGDEFCILVTDVDDDYAASTVAQRCL 555

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           + +  S I +S+        S GIA        +ST+I  AD +LY AK+ G+NR   +
Sbjct: 556 EEVSQS-IELSA-RKFTPACSIGIAHYPDDGRELSTLIKAADTSLYAAKERGKNRYAFY 612


>gi|152980873|ref|YP_001353831.1| hypothetical protein mma_2141 [Janthinobacterium sp. Marseille]
 gi|151280950|gb|ABR89360.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 934

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 12/198 (6%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKL 129
            I ++L +   S  ++L I   ++S  +  D L+GL N   F   L          +++ 
Sbjct: 482 IIGVVLVFHDVSDSRKLAI---QLSHQAAHDPLTGLFNRREFERRLEVAIDTLALQSKQH 538

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           ++++ D+D FK +ND  GH  GD+++  ++  L  +      + RLGG+EF A     + 
Sbjct: 539 ALLYLDLDQFKIVNDTCGHSAGDELLRQITALLQPLVRDSDTLARLGGDEFGAFLENCTP 598

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAK 248
             A  +A  LR+ I +    +       I +S G+         +  ++  AD A YVAK
Sbjct: 599 DSAVRIAEKLRQTICDFHF-VWQDKIFPIGVSIGLVNFNSDALSLPDLLSAADAACYVAK 657

Query: 249 KSGRNRVVCFSDIENNTC 266
            +GRNRV  +   ++   
Sbjct: 658 DTGRNRVHIYRAEDHQLA 675


>gi|300309602|ref|YP_003773694.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1]
 gi|300072387|gb|ADJ61786.1| GGDEF domain containing protein [Herbaspirillum seropedicae SmR1]
          Length = 384

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 106/235 (45%), Gaps = 15/235 (6%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
           Y  +   +F       A      + L  F G     +  +SLV  S+ + L+   ++G  
Sbjct: 152 YVLLIHGLFYLAKAVSALALGAVVDLAAFGG----TLIQISLVEGSMAVMLIALSMTG-- 205

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQIN 143
             E      RI QL+  D L+GLLN  A  +         S     +++  DID FKQ+N
Sbjct: 206 -TERHRREERIGQLAARDPLTGLLNRRALQARAPALIAQASQAHPGALLLIDIDNFKQVN 264

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GDK++  LS  L  V        RLGG+EFA       + + A +   LR+  
Sbjct: 265 DLHGHAAGDKLLEALSTLLREVLPDDALAARLGGDEFAILLPDGRQAQVAHIGEQLRQAF 324

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            +      + P   +++S G++        ++ ++ RAD ALY AK++GRN++V 
Sbjct: 325 VHVTQTAVATPE-AVSLSVGVSLFSTAALDLAGLMARADAALYEAKRAGRNQIVI 378


>gi|289642805|ref|ZP_06474942.1| diguanylate cyclase/phosphodiesterase [Frankia symbiont of Datisca
           glomerata]
 gi|289507374|gb|EFD28336.1| diguanylate cyclase/phosphodiesterase [Frankia symbiont of Datisca
           glomerata]
          Length = 786

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 99/236 (41%), Gaps = 23/236 (9%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
           +  +F  +F A       +   +I L P           + L   ++  +++   I+ + 
Sbjct: 262 WEVLFIPVFFAVSALTLLVLGAFIRLPPL---------TVVLAAGTVLTAIVRAGITFTE 312

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQIN 143
           +++L  S       +R D L+G  N   F   L     +       +++  D+D FK+IN
Sbjct: 313 VRQLADS----KMQARTDELTGFANRRGFFERLNEEETRGGGAARFTLLVLDLDRFKEIN 368

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH VGD ++  +  ++         + RLGG+EFA     +    A  +A  +   +
Sbjct: 369 DSLGHQVGDDLLKLVGRRIETALRPTDLLARLGGDEFAVLLQDADATAARTVAERVLAAL 428

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCF 258
           +        G S H+  S G+A         + ++ RAD A+Y AK + R R+  +
Sbjct: 429 DG--PFDVDGVSFHVDASIGVAVYPDHAVAGNVLLQRADIAMYAAKAA-RTRIEHY 481


>gi|217978731|ref|YP_002362878.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylocella silvestris BL2]
 gi|217504107|gb|ACK51516.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylocella silvestris BL2]
          Length = 608

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 11/192 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136
            ++   + +   +  R++ L   D L+ L N + F       +S L S   ++++++ D+
Sbjct: 154 LVTIIDVTDKQRAELRLAHLEHHDALTDLPNRALFRIRLDEALSRLDSGQGEIAVLYLDL 213

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAIL 195
           D FK IND  GH VGD ++  ++D+L         + R GG+EFA      +   EA  L
Sbjct: 214 DQFKAINDTLGHTVGDALLRAVADRLRACLRPGDTLARFGGDEFAFLCGRLAGPDEAGKL 273

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A+ +    E     +  G  + I  S G+A           ++  AD ALY AK+ GR  
Sbjct: 274 ASLIVD--EVGGPYVIQGHCVEIGASIGVAMAPGDGRDSDLLLKHADMALYRAKEEGRRA 331

Query: 255 VVCFSDIENNTC 266
              F    +   
Sbjct: 332 FRFFEPEMDARA 343


>gi|168203410|gb|ACA21545.1| diguanylate cyclase response regulator [Candidatus Pelagibacter
           ubique]
          Length = 455

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 106/235 (45%), Gaps = 20/235 (8%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR 99
           A+++  A+I           G + +L    S   I+  I+  L  +   +   L      
Sbjct: 224 ASILASASIETATTLAALDLGADDVLFPTFSGSEIAHRIATQL--VHKRVNDHLRAMVQE 281

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
             + +  D L+GL N    ++ L    ++       L++   D+D+FK++ND +GH  GD
Sbjct: 282 GFKAAVTDPLTGLYNRRYAMTHLCHQFQRATQGQTDLALFVLDLDFFKRVNDTYGHAEGD 341

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  ++  L  V      V R G EEF      +S + A  +A  +  +I   +I    
Sbjct: 342 QVLRRVAKLLQHVTRASDMVARFGREEFLVVLPDASAEIAGNIAERVCTMIRRLKI---- 397

Query: 213 GPS-IHITISAGIAERCHKE------PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           GP+ I IT S G++ R +            ++ +AD+ALY AK  GR+RV  F++
Sbjct: 398 GPNLIEITASIGVSLRYNAAQIHVHLTAQELMKQADRALYRAKAMGRDRVSYFAE 452


>gi|167622741|ref|YP_001673035.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167352763|gb|ABZ75376.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 374

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/266 (24%), Positives = 120/266 (45%), Gaps = 18/266 (6%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY--IL 65
            L + L  ++N+        ++      ++F    +    IF F      ++ ++Y  +L
Sbjct: 106 LLGLALLSDQNMPGIESLADVLVLVFALALFPNRNVMAFAIFPFLAFSAVYHSMQYSQVL 165

Query: 66  VENLSLVIISITISL-----LLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAF 118
           +  L+  +  + I L     + G+   ++ +  E      +  +L+ ID L+ + N   F
Sbjct: 166 IYPLTKFLCFLGIILSGQKIISGWFFKAVSRNIEKKKLLQQFKRLAMIDGLTNISNRRHF 225

Query: 119 ISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPM 170
              L          N+ LSI+  D+D+FK +ND+ GH VGDK +  ++  L   +     
Sbjct: 226 DEVLTQEIKASLRNNKPLSIIMVDVDFFKPLNDSLGHQVGDKYLKRIAGVLNSALERPRD 285

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCH 229
            V R GGEEF  A   +    A  +A  +++ I ++++    SG S  IT+S GIA+   
Sbjct: 286 LVARYGGEEFVIALPDTDLSGATQVAEKIKQAIADTELAHPGSGVSDFITVSQGIAQWHE 345

Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255
               + ++  AD  LY AK +GR+  
Sbjct: 346 GMEPAQLLETADSLLYQAKSAGRDCY 371


>gi|297584952|ref|YP_003700732.1| diguanylate cyclase [Bacillus selenitireducens MLS10]
 gi|297143409|gb|ADI00167.1| diguanylate cyclase [Bacillus selenitireducens MLS10]
          Length = 354

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 74/235 (31%), Positives = 119/235 (50%), Gaps = 18/235 (7%)

Query: 32  SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK 91
           +  +S+ I   IF  ++F  Y    P    E  L  NLS     I + ++  Y S  I+ 
Sbjct: 125 AFVYSLMIW--IFNFSLFFVYWSDFPIPIREQALHYNLS-----IFVYIIFLYFSRKIIH 177

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFG 147
                   +S+L+  D L+G+ N       L     +  + +S++  DIDYFK++ND  G
Sbjct: 178 N-NAKNELLSELAYKDELTGVANRRQIYEWLHLSYKNKVKPVSVIMLDIDYFKKVNDIHG 236

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GDKV+  L+  +        ++GR GGEEF   +  + + +A  LA  LR+ +E+  
Sbjct: 237 HLIGDKVLIELTQLIENELSDQSYLGRWGGEEFIILSYQT-KDQAKKLAETLREQVESYS 295

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC-FSDI 261
             I   P   ITIS+G+ E    + + +++ RAD+ LY AK++GRNRV   F D+
Sbjct: 296 F-IEDHP---ITISSGVDEMQQDDTVDSLVNRADKLLYQAKETGRNRVCSDFQDL 346


>gi|85708037|ref|ZP_01039103.1| hypothetical protein NAP1_02340 [Erythrobacter sp. NAP1]
 gi|85689571|gb|EAQ29574.1| hypothetical protein NAP1_02340 [Erythrobacter sp. NAP1]
          Length = 410

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 8/165 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150
           N + + S  D L+GL N +AF  ++G         ++  S+V  DID+FKQ+ND +GH  
Sbjct: 202 NSLRESSDKDPLTGLNNRAAFEEAMGRIIPRAHTEDKPFSLVVADIDHFKQVNDIWGHQA 261

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD  I+     +          GR+GGEEF  A      + A  LA+ +R      + + 
Sbjct: 262 GDSAISGFGKLIQETIRGCDTAGRIGGEEFCVAVWNCPNEPAERLADRIRTAFARLEHDG 321

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +   I +T S G+A     E    +  RAD ALY AK +GRNRV
Sbjct: 322 LND-DIRLTASFGVATVREGESYERLFARADAALYRAKSNGRNRV 365


>gi|114564162|ref|YP_751676.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114335455|gb|ABI72837.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 548

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 83/171 (48%), Gaps = 11/171 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L     ++ QL+  D L+ L N  AF       IS    ++  +++V  DID+FK+IND 
Sbjct: 380 LNQQNEKLEQLASKDPLTLLYNRRAFSALVDKEISRAKRHHFPITLVILDIDHFKKINDE 439

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH VGD ++   +D+L +       + R GGEEF      ++         ++R+ I  
Sbjct: 440 FGHNVGDDILCRFADELSLNMRKENLICRWGGEEFVILIPEATSTMVFKHIEEVRQKISQ 499

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                   P   +T SAGIA    +EP      RAD ALY AK +GRN ++
Sbjct: 500 MSF----SPVEKLTFSAGIATLRVEEPFKEWFQRADSALYQAKGAGRNCII 546


>gi|310819572|ref|YP_003951930.1| FHA domain/GGDEF domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309392644|gb|ADO70103.1| FHA domain/GGDEF domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 293

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/168 (34%), Positives = 83/168 (49%), Gaps = 9/168 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           +  I  L+  D L+G+ N   F+  L         Y+  LS++ FDID+FK+IND  GH 
Sbjct: 126 HETIYTLTIADGLTGVSNKRYFLEYLEREMGRSHRYHRALSLMIFDIDHFKKINDVHGHL 185

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  L+  +  +        R GGEEFA        ++A + A  +RK+IE     
Sbjct: 186 AGDHVLRELAQSVKRLVRREQCFARYGGEEFALVMPEDGPEKARLFAEKIRKLIEERTFM 245

Query: 210 ISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
                 I +TIS G+A+        +  I  +D  LY AKK+GRNRVV
Sbjct: 246 FED-KEIPVTISIGVADMTADMTEPTQFIKVSDANLYRAKKAGRNRVV 292


>gi|296135397|ref|YP_003642639.1| diguanylate cyclase [Thiomonas intermedia K12]
 gi|295795519|gb|ADG30309.1| diguanylate cyclase [Thiomonas intermedia K12]
          Length = 361

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 29/256 (11%)

Query: 28  MIYFSIFFSIFIATV-----IFIANIFLFYIGLTPFYGLEYILVENL--------SLVII 74
           +++F++  S+ + TV     +      L+ I L   +G   +    L        SL+I+
Sbjct: 93  LMHFNLLPSVVLVTVTTFDKLSSGMRRLWLISLPGLFGAAVLTALILRPPVQLESSLLIV 152

Query: 75  SITISLLLGYI------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125
           + T+ LL+ +       S  +++ +      + QL R D  +GL     +     +    
Sbjct: 153 ACTLPLLVVHTLSSSIGSYRLIRTVSRQNTLLEQLRRTDAQTGLFARDHWQQQADAALQL 212

Query: 126 ----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                +   ++  D+D+FKQ+ND +GH  GD  I  +   +          GR G +EFA
Sbjct: 213 FQAVGQPACLLMIDVDHFKQVNDTYGHTAGDDAIRAVGQLIRDCIREEDCAGRYGDDEFA 272

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRA 240
                + + +A  +A  +R   E   + +   P++ ++ S G+A        +   +  A
Sbjct: 273 VLCQNTGQPDALGIAERIRT--ELLTLRLPHHPNVRLSSSIGVAAAAPAFSNLQAWMQAA 330

Query: 241 DQALYVAKKSGRNRVV 256
           D ALY AK  GRN+V 
Sbjct: 331 DAALYSAKHQGRNQVA 346


>gi|167906045|ref|ZP_02493250.1| EAL/GGDEF domain protein [Burkholderia pseudomallei NCTC 13177]
          Length = 688

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/215 (30%), Positives = 100/215 (46%), Gaps = 15/215 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRIS----QLSRIDCLSGLLNHSAFIS 120
           L   ++L  ++I I  L+          L  S +R+S    +++  D L+ L N      
Sbjct: 214 LAATVALFTVAILIVALILSHFDVRTTLLAGSVSRLSGQIVRMAAFDTLTDLPNRHTLNE 273

Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            LG           KL+I+F D+D FK IND+ GHP GD+V+   S +L+        V 
Sbjct: 274 HLGRALAAARARGGKLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVA 333

Query: 174 RLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           RLGG+EF       SS+ EAA +A D+ + +   + N   G ++ +T S GIA      +
Sbjct: 334 RLGGDEFVVLLESVSSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGD 391

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              T++  AD A+Y AK+ GR     F    +   
Sbjct: 392 TADTLLRHADAAMYAAKRGGRCTYRFFEATMDEAA 426


>gi|165918173|ref|ZP_02218259.1| diguanylate cyclase (GGDEF) domain/cyclic diguanylate
           phosphodiesterase (EAL) domain protein [Coxiella
           burnetii RSA 334]
 gi|165918033|gb|EDR36637.1| diguanylate cyclase (GGDEF) domain/cyclic diguanylate
           phosphodiesterase (EAL) domain protein [Coxiella
           burnetii RSA 334]
          Length = 577

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/198 (30%), Positives = 95/198 (47%), Gaps = 13/198 (6%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------N 126
           +   I+L    +  SI   L  +  RI+ L+  D L+ L N   FI  L          +
Sbjct: 117 LHFIIALQDVTLQQSIFHTLLKNEARIAYLASRDQLTSLPNRREFIHRLNEEIGKPKSVD 176

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAA 184
            KLS++F D+D FK IND  GH +GD+V+  +SD+L  +  +P   F+G LGG+EF    
Sbjct: 177 SKLSLLFLDLDNFKDINDALGHHMGDRVLVHVSDRLRKLDLSPLNYFLGHLGGDEFVILL 236

Query: 185 LGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQ 242
               +  +A + A  +      S         +++  S GI  +   K    T++ +AD 
Sbjct: 237 KDLQQDKDATLCAKKISNAFSES--FKIKNFLLYVNFSIGITIDFYSKTDSETLLKKADM 294

Query: 243 ALYVAKKSGRNRVVCFSD 260
           A+Y AKK GRN    +++
Sbjct: 295 AMYQAKKKGRNTFSFYTE 312


>gi|326794921|ref|YP_004312741.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326545685|gb|ADZ90905.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 392

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 62/163 (38%), Positives = 92/163 (56%), Gaps = 11/163 (6%)

Query: 104 SRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S  D L+GLLN             S  ++ + +S++FFDID+FK++ND +GH  GD  +A
Sbjct: 232 SIKDELTGLLNRRYLEEIHQDVSESADAHKQPISVLFFDIDHFKRVNDEYGHQCGDITLA 291

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            + D +        F  R GGEEF      S +QEA  +A +LR+ IENS IN+     I
Sbjct: 292 KVGDIVSNHTRVRDFSFRYGGEEFVMIVR-SDQQEAFAMAEELRQAIENSPINLGD-QYI 349

Query: 217 HITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
           H+T+S G+A R   +   I  +I +AD  +Y+AK++GRN+V  
Sbjct: 350 HVTVSIGVATRASNDVCSIKDVIAKADSLMYLAKQAGRNQVKV 392


>gi|169797059|ref|YP_001714852.1| GGDEF domain-containing protein [Acinetobacter baumannii AYE]
 gi|213156535|ref|YP_002318196.1| diguanylate cyclase [Acinetobacter baumannii AB0057]
 gi|215484520|ref|YP_002326755.1| Uncharacterized protein yneF [Acinetobacter baumannii AB307-0294]
 gi|332852148|ref|ZP_08433975.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332867547|ref|ZP_08437700.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
 gi|169149986|emb|CAM87880.1| putative membrane protein; putative GGDEF domain [Acinetobacter
           baumannii AYE]
 gi|213055695|gb|ACJ40597.1| diguanylate cyclase [Acinetobacter baumannii AB0057]
 gi|213987432|gb|ACJ57731.1| Uncharacterized protein yneF [Acinetobacter baumannii AB307-0294]
 gi|332729520|gb|EGJ60859.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332733964|gb|EGJ65109.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
          Length = 473

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 113/249 (45%), Gaps = 19/249 (7%)

Query: 22  FSPHTFMIYFSIFFSIFIATVI--FIANIFLFYI--GLTPFYGLEYILVENLSLVI--IS 75
             P   +I+ +I +   I  +I  F +   ++++       Y  +Y L  N+S+ I  I 
Sbjct: 225 LYPIAALIWCAIRYKPIIVALITSFTSAYIIYHVSGHYLLLYPQDY-LSNNISIRIGLIM 283

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------ 129
           +T++ L      ++  EL     ++      D L+  L    F+ S+    EK+      
Sbjct: 284 MTVAPLTVSSISALHSELI---QKLQHAIAHDELTSSLTRRQFLQSVRLLQEKVQKENKT 340

Query: 130 -SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            +    D+D+FK++ND++GH +GD+ +      +  +      +GR GGEEFA     ++
Sbjct: 341 SAFFMLDVDHFKKVNDSYGHLIGDRALQTCVTTIQNILHPHDLLGRFGGEEFAIFIPDTT 400

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYV 246
            + A  LA  +R  I    I +     I + +S GI+         I ++   AD ALY 
Sbjct: 401 REAAFELAERIRIQISQQPIYVYGKLPIFVQVSIGISLYSPSYHRSIESLFKEADDALYQ 460

Query: 247 AKKSGRNRV 255
           AK+ GRNRV
Sbjct: 461 AKRQGRNRV 469


>gi|121608322|ref|YP_996129.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Verminephrobacter eiseniae EF01-2]
 gi|121552962|gb|ABM57111.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Verminephrobacter eiseniae EF01-2]
          Length = 836

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 83/192 (43%), Gaps = 12/192 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
           G  +     +  +I +L+  D L+GL N    +  L          N + +++F D+D F
Sbjct: 381 GRDITGRKQAEGQIERLAFYDALTGLPNRRLLLDRLQHATVAVTRSNTQGALLFIDLDNF 440

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILAN 197
           K +ND  GH  GD ++   + +L         V R GG+EF    A L ++  +A+  A 
Sbjct: 441 KSLNDTLGHDAGDHLLQQAAQRLKACVREVDTVARFGGDEFVVLLAGLSAAAAQASAEAA 500

Query: 198 DLRKIIENS--QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
            + K I  S  Q     G   H T S GIA    +   +  ++ +AD A+Y AK +GRN 
Sbjct: 501 QVAKHIAASLGQPYALGGAVHHSTPSIGIALFGPQACRVDELLKQADLAMYQAKAAGRNT 560

Query: 255 VVCFSDIENNTC 266
              F        
Sbjct: 561 QRFFDPEMQAAA 572


>gi|94495787|ref|ZP_01302366.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingomonas sp. SKA58]
 gi|94424479|gb|EAT09501.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingomonas sp. SKA58]
          Length = 854

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 11/187 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDY 138
           SG+ L E+  S   +++L++ D L+GL N    + SL       +      +++  D+D 
Sbjct: 311 SGTDLTEMRRSQAEVTRLAQYDSLTGLANRIQMLRSLEQAVAARHGRPGECTLMMLDLDR 370

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILAN 197
           FK +ND+ GHP GD ++  +S +L  V G    VGR GG+EF         +    +LA 
Sbjct: 371 FKSVNDSLGHPAGDTLLRQVSQRLQRVVGEKGLVGRQGGDEFKILLPRHHDKSSLELLAK 430

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            +   +   +     G S+ I +S G++           +I  AD ALY AK  GR    
Sbjct: 431 AIIATVA--EPYTIEGTSVVIGVSIGVSMSPQDGVTAEALIRNADLALYAAKGDGRGVHR 488

Query: 257 CFSDIEN 263
            ++   +
Sbjct: 489 FYAPEMH 495


>gi|8118492|gb|AAF73001.1|AF262022_1 hypothetical protein [Vibrio cholerae]
          Length = 205

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/170 (35%), Positives = 93/170 (54%), Gaps = 5/170 (2%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGH 148
            L     ++ + +  D LSGL N  AF     +L    +++S++  DID+FK +NDN+GH
Sbjct: 34  RLKEQLAKVQKDALFDSLSGLYNRRAFDGDMFTLIHAGQQVSLIMLDIDHFKALNDNYGH 93

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD++I  ++ +L  +    +   R GGEEFA  A   S + A   A  +R+ IE   +
Sbjct: 94  LFGDQIIRAIAKRLQSLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTV 153

Query: 209 -NISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +  SG S+  IT S G+ E+   + + ++I RAD  LY AK  GRNRV+
Sbjct: 154 KDRRSGQSVGSITASFGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 203


>gi|28868945|ref|NP_791564.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213968727|ref|ZP_03396869.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
 gi|301381342|ref|ZP_07229760.1| GGDEF domain protein [Pseudomonas syringae pv. tomato Max13]
 gi|302060232|ref|ZP_07251773.1| GGDEF domain protein [Pseudomonas syringae pv. tomato K40]
 gi|302130021|ref|ZP_07256011.1| GGDEF domain protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28852185|gb|AAO55259.1| GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926660|gb|EEB60213.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1]
 gi|331016835|gb|EGH96891.1| GGDEF domain protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 308

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 8/170 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y   +Q +  D L+   N  A    L         + + LS++  DID+FK++ND +GH 
Sbjct: 140 YRIATQTALRDPLTSTGNRIAMDQGLAREIEISSRHKQPLSLLMLDIDHFKKVNDEYGHH 199

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  L         V R GGEEF      +    A ++   LR+ + N +  
Sbjct: 200 TGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGATAAELIGERLRQAVRNLEFR 259

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               P++ +T+S G +     E   +++ RAD ALYVAK+ GRNR+   S
Sbjct: 260 ELD-PALTMTVSLGCSTLLPTETADSLLRRADNALYVAKREGRNRLAMAS 308


>gi|46581509|ref|YP_012317.1| GGDEF domain-containing protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450931|gb|AAS97577.1| GGDEF domain protein [Desulfovibrio vulgaris str. Hildenborough]
          Length = 655

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 105/243 (43%), Gaps = 20/243 (8%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI 85
             ++ F    ++FIAT   +    +      P  G   +L+ + +    S T++ L   +
Sbjct: 265 VMVVLFLTVIAVFIATAHRVGPFHM------PTQGEAVMLLVSFA---ASTTLTTLGLSL 315

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDY 138
              +L +         Q + ID L+GL N + F          L   +  LS++ FD D+
Sbjct: 316 YRHLLAQAGARATMWEQRAGIDPLTGLCNRARFDEVLLAELQRLQRQDSPLSLMMFDADH 375

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           FK  ND +GH  GD  +  ++  L  V       V R GGEEF     G+    A  LA 
Sbjct: 376 FKPYNDMYGHVAGDACLKRVAGVLRAVAHRASDVVARYGGEEFVCILPGTDRDSAYALAE 435

Query: 198 DLRKIIENSQINISSGPSIHI-TISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNR 254
            +R+ +    I     P   + T+SAG+     C       ++ + D+ALY AK +GR+R
Sbjct: 436 KVRQGVRALAIPHVGSPVAGVLTVSAGVVTVHGCDGLDPQEVVAQVDRALYQAKGAGRDR 495

Query: 255 VVC 257
           V+ 
Sbjct: 496 VMV 498


>gi|95930629|ref|ZP_01313363.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95133281|gb|EAT14946.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 368

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 12/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIN 143
           + L  ++  + +++RID L+ + N   F  S     +        LSI+  DID+FK+ N
Sbjct: 185 QALEKAHAALERIARIDGLTQIANRRTFDESFTEQWQKSLVEQSPLSIILCDIDFFKRYN 244

Query: 144 DNFGHPVGDKVIAFLSDQLVV--VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           D +GH  GD  ++ ++  L       +   V R GGEEF      +S +EA   A   R 
Sbjct: 245 DTYGHQQGDTCLSSVAQALEQTLSEQSSGLVARYGGEEFIFLLPATSVEEATAHAETARN 304

Query: 202 IIENSQINISSGPSI-HITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVV 256
            IE   +   +     ++T+S G++    +  +    +I  AD+ALY +K++GRNRV 
Sbjct: 305 NIEQLALEHQASEVADNVTLSLGVSCTIPQSDMQPQHLIRTADEALYQSKETGRNRVT 362


>gi|332187591|ref|ZP_08389327.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
 gi|332012339|gb|EGI54408.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
          Length = 667

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 103/240 (42%), Gaps = 11/240 (4%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
             ++       +   F   + L P   L   ++    L +  IT       +  +I  + 
Sbjct: 160 LIALSQLCFASLPLAFGLLLPLDPLKALLAAVILFFVLAMSDITQQTYAAILRATIASDE 219

Query: 94  FISYNRIS-QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
             +      +++R D L+G+ N +AF               +KL++++ D+D FK++ND+
Sbjct: 220 KAALAEHHARMARRDDLTGVANRTAFREHFEERLRLRAASEKKLALLWLDLDRFKEVNDS 279

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  G+ ++  ++ +L  V G    V RLGG+EFA     +  Q A  +   +   +  
Sbjct: 280 FGHLAGNALLVSVARRLEAVLGDHGIVARLGGDEFAVICCIADAQAAGRIGTAILDSVRQ 339

Query: 206 SQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           S     +G  +  T S GIA          T++  AD ALY AK+ GR R   +  + + 
Sbjct: 340 SVRF--NGHELRTTASIGIAIAPDNGSDADTLLKNADLALYRAKEKGRGRFFFYEPLMDE 397


>gi|330969984|gb|EGH70050.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 318

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 24/190 (12%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
            L ++ ++++ L++ D L+GL N      S+     +        S++  DID+FK+ ND
Sbjct: 122 RLKMAMDQLNLLAQTDGLTGLANRRFLDESIAREWLRMRRNQGAFSLLLLDIDFFKRYND 181

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           ++GH  GD+ +  ++  L      +   V R GGEEFA     +  + A  LA+++ + I
Sbjct: 182 HYGHLQGDECLIAIAHALKKCVHRSTDLVARYGGEEFAVLLPDTGAEGACRLADEIVQHI 241

Query: 204 ENSQINISSGPSIHITISAGIAERCHK---------------EPIS-TIIYRADQALYVA 247
                   +     +T+S G+A                    + I+  ++  AD+ALY A
Sbjct: 242 HGLNKPHETSDFGRVTVSVGVASLEAGALPVPSPGAAIGLAPDSIAIALLAEADRALYRA 301

Query: 248 KKSGRNRVVC 257
           K  GRN    
Sbjct: 302 KHEGRNCSRF 311


>gi|320180279|gb|EFW55214.1| RNase II stability modulator [Shigella boydii ATCC 9905]
          Length = 557

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 91/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    +TII  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSATIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|296282038|ref|ZP_06860036.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Citromicrobium bathyomarinum JL354]
          Length = 774

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 10/184 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQ 141
             + E   +  R+++++R D L+ L N   F  SL           ++++++ D+D+FK 
Sbjct: 312 RDVTESRQTEQRVARMARYDQLTELANRHLFNESLNEMLAGTGRRRRIALLYIDLDHFKS 371

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND  GH VGD ++   + +++ V        RLGG+EFA       + +     A  + 
Sbjct: 372 VNDTLGHHVGDGLVRAAARRILGVIREHDLAARLGGDEFAVLLTRVRNLEAVHQCAERIV 431

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +   Q     G ++ ++ S G+            ++ +AD ALY AK++GR+    + 
Sbjct: 432 EAMA--QPFNIDGQTVRVSASVGVGYSEDDSIDGEELMRQADLALYAAKRAGRSTFADYD 489

Query: 260 DIEN 263
              N
Sbjct: 490 PSLN 493


>gi|220916672|ref|YP_002491976.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954526|gb|ACL64910.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 455

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 4/166 (2%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            ++  L+ +D L+ L N      +L          S++F D+D+FK +ND  GH  G ++
Sbjct: 278 RQVEHLAYLDDLTHLYNTRYLDMALDREMQSGRPFSVLFMDLDHFKTVNDQHGHLSGSRL 337

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  L         + R GG+E+    +G        +A  +R+ IE+ +     G 
Sbjct: 338 LVEVARVLRSCVRDEDVLVRYGGDEYVVLLVGIDSGGGLKVAERVRRAIEDHRFLSREGA 397

Query: 215 SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +T S G+A    H +  S I+  AD+A+Y  K+S RN V   S
Sbjct: 398 RVRVTASIGLASYPEHAQEKSEILDLADRAMYRGKRSSRNVVYMAS 443


>gi|153828768|ref|ZP_01981435.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|148875721|gb|EDL73856.1| GGDEF family protein [Vibrio cholerae 623-39]
          Length = 976

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 22/228 (9%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI------------- 95
           F +   + P +     ++    ++ +++ +SL++  I     +EL++             
Sbjct: 739 FSYVFIIEPHWWQRKEVIVMAGMLFLALAVSLVMWRIRILKRRELYLVEQVALQTQKLRL 798

Query: 96  SYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
              +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIND + H
Sbjct: 799 QAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIALLDIDHFKQINDRYSH 858

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+ I  +S +L+   G    V R GGEEF    +G   ++A      LR  IE   +
Sbjct: 859 IIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVG-DPKQAWGYFEKLRCKIEQVDL 917

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  + P +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 918 SAVA-PGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 964


>gi|89092556|ref|ZP_01165509.1| putative diguanylate cyclase (GGDEF) [Oceanospirillum sp. MED92]
 gi|89083068|gb|EAR62287.1| putative diguanylate cyclase (GGDEF) [Oceanospirillum sp. MED92]
          Length = 337

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 89/179 (49%), Gaps = 11/179 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNE------KLSIVFFDIDYFKQ 141
           K L    ++ S+ +  D L+GLLN   F   I  L +           SIV FD+D+FK 
Sbjct: 156 KSLKERLDKASRDAMEDELTGLLNRKGFRKCIEELTAERAVPLDQVPYSIVSFDVDHFKN 215

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH  GDKV+   ++ ++          R GGEEF      +    A ++A  +R 
Sbjct: 216 VNDTYGHLFGDKVLHNTAEVILKSVRGNDIAVRFGGEEFILLLPDTDLDGARLVAEKVRT 275

Query: 202 IIENSQ-INISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            IE  + IN  +G  +  IT+SAGI+   H   +  +I  AD ALY AK +GRNR   +
Sbjct: 276 TIEKVRWINRRTGKKLDPITLSAGISANQHSMALEEVIELADVALYQAKGAGRNRSCIY 334


>gi|113971650|ref|YP_735443.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113886334|gb|ABI40386.1| diguanylate cyclase [Shewanella sp. MR-4]
          Length = 302

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 80/179 (44%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
            S + +      ++ QLS  D L+GL N       L         ++   SI+  D+D+ 
Sbjct: 122 ASNISKRHKLELQLRQLSDTDQLTGLYNRRRLDRDLQLLFDTFSRHHIPASILVLDLDHL 181

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND  GH  GD+VI  +++     F       R GG+EF  A  G    +A + A  L
Sbjct: 182 KRINDQLGHQAGDRVIIAVAEACQQQFRKTDSAYRFGGDEFVIALPGVEHDQAIVFAEYL 241

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
                 +   +S    +  T+S G+A     +      + RAD ALY AK+ G+NRV+ 
Sbjct: 242 CDCCFKALQKLSV-KGLFATVSIGVASIEAGDKSYEDTLKRADAALYQAKRDGKNRVIA 299


>gi|307294034|ref|ZP_07573878.1| diguanylate cyclase with PAS/PAC sensor [Sphingobium
           chlorophenolicum L-1]
 gi|306880185|gb|EFN11402.1| diguanylate cyclase with PAS/PAC sensor [Sphingobium
           chlorophenolicum L-1]
          Length = 593

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 6/176 (3%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQ 141
             +         + Q + +D L+G     AF+  L           + S++  DID+FK 
Sbjct: 416 RDMSRHKARQRALQQAAALDSLTGADTRRAFLEKLEEEMSRVRRGGRASLLLIDIDHFKA 475

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD+V+A   ++L         +GRLGGEEFA    G+  + A+++   LR+
Sbjct: 476 VNDCHGHGAGDRVLAGFVERLRPGLRGVDSIGRLGGEEFAILLSGTDVERASMICERLRE 535

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++    + I SG  I +T SAG+     +     ++  AD+ALY AK SGRN +  
Sbjct: 536 MVSAHPVRIDSGEMIRVTFSAGLVSLGSQSDGQAVLDAADKALYNAKHSGRNCLRL 591


>gi|261211344|ref|ZP_05925632.1| GGDEF family protein [Vibrio sp. RC341]
 gi|260839299|gb|EEX65925.1| GGDEF family protein [Vibrio sp. RC341]
          Length = 456

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 14/193 (7%)

Query: 72  VIISITISLLLGYISGSILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGS------ 124
           ++ ++ IS L+      + +  F  Y  R+  ++  D L+G  +   F   +        
Sbjct: 266 MLGNLAISALVAIAVLGLAQMSFRGYQKRLEDMAVRDKLTGAYSRQVFEELVEEAISNAT 325

Query: 125 -YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                LS+   D+D+FKQ+NDN+GHPVGD V+  +             + R GGEEF   
Sbjct: 326 KELHPLSLAVIDLDHFKQVNDNYGHPVGDLVLQRVVGICQRHIEQVGTLCRWGGEEFVVL 385

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
                 QEA      +R  I              +T+S G+ E    E +  +  RADQA
Sbjct: 386 LPDMPLQEAYQRMEQIRHDIAVM------SSKPQVTVSIGVVEYSPNESLLQLFNRADQA 439

Query: 244 LYVAKKSGRNRVV 256
           +Y AK  GRN+VV
Sbjct: 440 MYTAKNEGRNKVV 452


>gi|154705984|ref|YP_001425443.1| sensory box/GGDEF family protein [Coxiella burnetii Dugway
           5J108-111]
 gi|154355270|gb|ABS76732.1| sensory box/GGDEF family protein [Coxiella burnetii Dugway
           5J108-111]
          Length = 577

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/198 (30%), Positives = 95/198 (47%), Gaps = 13/198 (6%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------N 126
           +   I+L    +  SI   L  +  RI+ L+  D L+ L N   FI  L          +
Sbjct: 117 LHFIIALQDVTLQQSIFHTLLKNEARIAYLASRDQLTSLPNRREFIHRLNEEIGKPKSVD 176

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAA 184
            KLS++F D+D FK IND  GH +GD+V+  +SD+L  +  +P   F+G LGG+EF    
Sbjct: 177 SKLSLLFLDLDNFKDINDALGHHMGDRVLVHVSDRLRKLDLSPLNYFLGHLGGDEFVILL 236

Query: 185 LGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQ 242
               +  +A + A  +      S         +++  S GI  +   K    T++ +AD 
Sbjct: 237 KDLQQDKDATLCAKKISNAFSES--FKIKNFLLYVNFSIGITIDFYSKTDSETLLKKADM 294

Query: 243 ALYVAKKSGRNRVVCFSD 260
           A+Y AKK GRN    +++
Sbjct: 295 AMYQAKKKGRNTFSFYTE 312


>gi|332533626|ref|ZP_08409486.1| hypothetical protein PH505_as00180 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036907|gb|EGI73367.1| hypothetical protein PH505_as00180 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 317

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 17/229 (7%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR-- 99
           V+F+  IFL    L+        +   L +V+IS    LLL  +S  IL  L  S +   
Sbjct: 89  VMFLNAIFLSIPVLSSSIQ---DVATPLQIVLIS---HLLLATLSALILPFLLFSNSEYT 142

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           +S L+  D L+ L N   F ++  +  ++       +SI+  DID+FK +ND +GH  GD
Sbjct: 143 LSNLANTDSLTQLFNRRGFFNNAKAVLKQPNNNDINVSIIILDIDFFKHVNDKYGHDTGD 202

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + I +++  +   F       R+GGEEFA      S + A   A  LR+ I        +
Sbjct: 203 QAIKWIAQHIKEQFIDEGICARIGGEEFAILLPDYSLRAAKEYAEHLRENISKHPFYYQN 262

Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
              I +++SAG++   + +  +  ++  AD+ LY+AK++GR++VV F +
Sbjct: 263 AH-IKLSVSAGVSHSVNGKMSVKDLLSLADKRLYLAKETGRDKVVSFDE 310


>gi|302879430|ref|YP_003847994.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
           capsiferriformans ES-2]
 gi|302582219|gb|ADL56230.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
           capsiferriformans ES-2]
          Length = 337

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 11/184 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           +S +    L     ++S  +  D L+G  N   F                 L+++  DID
Sbjct: 135 VSFTREHMLKSHSKQLSIDATTDGLTGAYNRRYFNERFKAEFGRVNRQGTPLALLMLDID 194

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
            FK  ND +GHP GD+V+  + +++   +  T   V R GGEEFA        + A  +A
Sbjct: 195 CFKDYNDFYGHPAGDRVLIRIVERIKSQLNRTTDVVTRYGGEEFAILLPDCELEGARAVA 254

Query: 197 NDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRN 253
             ++  I    I  + S  + H+T+S GIA            ++  AD ALY AK  GRN
Sbjct: 255 QKIQHAILTLNIPHAKSNVADHVTLSIGIATHSVNSSCDANFLLNTADTALYTAKHEGRN 314

Query: 254 RVVC 257
            +  
Sbjct: 315 CIRY 318


>gi|237731698|ref|ZP_04562179.1| RNase II stability modulator [Citrobacter sp. 30_2]
 gi|226907237|gb|EEH93155.1| RNase II stability modulator [Citrobacter sp. 30_2]
          Length = 663

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 90/189 (47%), Gaps = 16/189 (8%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +    E     ++ IV+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRMLANTDSITGLPNRNAIHELISDAIENAGDTQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S    E  A+ + 
Sbjct: 279 KVNDAYGHMFGDQLLQSVSLAILSCLDDNQLLARFGGDEFIVLATETSQSTLEATASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             LR+      I + +G       S GI+    H +   ++I  AD A+Y AK+ GR + 
Sbjct: 339 TRLRQPFRIGLIEVYTG------CSIGISLAPQHGQDCESVIRNADTAMYTAKEGGRGQF 392

Query: 256 VCFSDIENN 264
             FS   N 
Sbjct: 393 CVFSPEMNQ 401


>gi|168262587|ref|ZP_02684560.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205348577|gb|EDZ35208.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 691

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 115/273 (42%), Gaps = 21/273 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIA--------NIFLFYIGLTPFYGL 61
           ++WL      E           ++   I IA + +          N  + + G+   +  
Sbjct: 156 ALWLTFRLRNEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLA 215

Query: 62  EYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
             + V  L+++ I++ +SL    +      +   L  +   ++QL+  D L+ L N    
Sbjct: 216 VLVSVVALTILGITLLVSLFDARLQARTALLASSLAQANQELAQLALHDTLTRLPNRVLL 275

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L          +   +++F D+D FK +ND +GH +GDK++  ++ +L         
Sbjct: 276 EDRLEQAISKANRESTSFALLFMDLDGFKTVNDAYGHDIGDKLLVAVTHRLNQPLSGQFT 335

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF   A  S+  EAA LA+ L   I+           + +T+S GIA      
Sbjct: 336 LARIGGDEFVLLAEVSAPDEAASLASALVHSIDA--PFTIDPYELVVTLSVGIALYPLDG 393

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +    +++ AD A+Y  K +GRN    F    N
Sbjct: 394 KNERELMFNADAAMYHTKHTGRNGYHFFQPSMN 426


>gi|323698999|ref|ZP_08110911.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio sp. ND132]
 gi|323458931|gb|EGB14796.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio desulfuricans ND132]
          Length = 327

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 11/175 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           +EL     ++ ++S  D L+GL N   F  +L       G  +  L ++  DID+FK  N
Sbjct: 138 RELERLARKLERMSNQDGLTGLANRRCFDDTLIREWVRNGREDHPLGLLMIDIDHFKAYN 197

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D  GH  GD  +  ++  +          V R GGEEFA     +    A ++A ++   
Sbjct: 198 DALGHVHGDACLRDVAQAIRMATNRPGDLVARYGGEEFAIILPNTDFGGARVVAENIHAN 257

Query: 203 IENSQINISSGP-SIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNR 254
           +  S+I       +  +T+S G A      +   + ++  AD+ALY AK SGRNR
Sbjct: 258 LAASRIRHPDSQVAGTVTVSIGAAATVPTCEITPAHLVQAADRALYQAKLSGRNR 312


>gi|299133186|ref|ZP_07026381.1| diguanylate cyclase [Afipia sp. 1NLS2]
 gi|298593323|gb|EFI53523.1| diguanylate cyclase [Afipia sp. 1NLS2]
          Length = 563

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 85/177 (48%), Gaps = 10/177 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           +EL  + +R+  ++ +D +SGL N     + L             +S++  D+D+FK  N
Sbjct: 372 RELVATNDRLQVMASVDMISGLANRRGLQNRLEFEWRKAEQTGGPVSLIMIDVDHFKLFN 431

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GDK +  + + L  + G    F  R GGEEF      ++   A  +   +R +
Sbjct: 432 DTYGHLEGDKCLRQIGEALAAIAGEVTGFAARYGGEEFCLLLPKTNGIAAMEIGERVRAV 491

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
           +E   I  S      +T+SAG+A     +   +  +I  AD ALYVAK  GRN VV 
Sbjct: 492 VEALNIPHSMSAFQQVTVSAGMAAVAPGQAASVQDLIEAADAALYVAKHRGRNNVVA 548


>gi|212637394|ref|YP_002313919.1| sensory box/GGDEF/EAL domain-containing protein [Shewanella
           piezotolerans WP3]
 gi|212558878|gb|ACJ31332.1| Sensory box/GGDEF/EAL domain protein [Shewanella piezotolerans WP3]
          Length = 710

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/191 (29%), Positives = 83/191 (43%), Gaps = 11/191 (5%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFD 135
             IS     E   S   I   +  D L+ L N    +  L           + L+++F D
Sbjct: 236 AVISFHDNSERLESEALIRHQAHYDALTDLPNRFLALRRLEQLVDASARSGKMLAVIFLD 295

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAI 194
           +D FK+IND+ GH  GD+++   +D+L+        VGRLGG+EF     G SS  +A  
Sbjct: 296 LDDFKKINDSLGHEAGDQLLITAADRLMKATRKEDTVGRLGGDEFIILLDGLSSANDAQP 355

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           LA +L       +        + +T S GIA      +  S ++  AD A+Y  K  GRN
Sbjct: 356 LAENLIGGFR--KPFYIDNRQLILTASIGIAIYPNDGKTPSELLRNADSAMYHTKSIGRN 413

Query: 254 RVVCFSDIENN 264
               F+   N 
Sbjct: 414 TYSYFTHAMNK 424


>gi|118477933|ref|YP_895084.1| diguanylate cyclase/phosphodiesterase [Bacillus thuringiensis str.
           Al Hakam]
 gi|118417158|gb|ABK85577.1| diguanylate cyclase/phosphodiesterase [Bacillus thuringiensis str.
           Al Hakam]
          Length = 495

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 94/200 (47%), Gaps = 10/200 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           +++V I I       Y+    +  +    ++I+ L+  D ++ + N   F   L    E+
Sbjct: 33  VTIVPIMIEGQTFGSYVMVKDITRMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIER 92

Query: 129 -------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                    +++ D++ FK IND  GH +GD V+  ++ +        + + R+GG+EFA
Sbjct: 93  AQKTQGEFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRAYLSPSIPLARIGGDEFA 152

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRA 240
                 +EQ+   L  +L +I    +  + +  S ++++S GIA         +T++  A
Sbjct: 153 IIVHNHTEQQQLDLCENLFRI--TKKPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHA 210

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D A+Y AK+ G N V  + +
Sbjct: 211 DIAMYSAKEKGNNAVCMYDE 230


>gi|323487743|ref|ZP_08093001.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Planococcus donghaensis MPA1U2]
 gi|323398477|gb|EGA91265.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Planococcus donghaensis MPA1U2]
          Length = 803

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 50/211 (23%), Positives = 93/211 (44%), Gaps = 19/211 (9%)

Query: 68  NLSLVIISITISLLLGYISGS------ILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           + S V++ +T  +L  +I G+      I  E+      +++ +  D L+ L N   F   
Sbjct: 322 SFSNVLMYVTFLILFLFILGAWGIINKIFNEINGYQKDLTKQAHYDALTELPNRVLFQKQ 381

Query: 122 LGSY---------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           +            N+  +++F D+D FK IND  GH  GD ++  ++ +L         V
Sbjct: 382 VDKLIDSIKNEKNNKAFAVLFIDLDRFKIINDTMGHSTGDSLLKEVAGRLKNCITDTAIV 441

Query: 173 GRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
            R GG+EF         ++A   +A ++ + I   +  +      +I+ S GI+      
Sbjct: 442 SRFGGDEFTVLFSDIKSKKAVHDMAREINETI--LKPFLLKNNEYYISTSIGISMYPVDG 499

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                +I  AD A+Y AK+SG++  V + + 
Sbjct: 500 SNSELLIKNADIAMYKAKESGKSNYVFYQNE 530


>gi|307319822|ref|ZP_07599246.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sinorhizobium meliloti AK83]
 gi|306894553|gb|EFN25315.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sinorhizobium meliloti AK83]
          Length = 530

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 12/191 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDID 137
           I    L     +   I  L+  D L+ L N S+F   L         +++ L+++  D+D
Sbjct: 85  IFVRDLTARKDAERTIEHLAHHDALTDLSNRSSFDRRLRQALAAAVHHDDALAVLCLDLD 144

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LA 196
            FK +ND FGH  GD+++  ++D L    G    + RLGG+EFA    G+++ EAA  LA
Sbjct: 145 RFKAVNDIFGHGEGDRILRKVADILRAAAGEADTIARLGGDEFAIVQTGAAQPEAARLLA 204

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + + K+             + + +S G+A           +   AD ALY AK++G+  +
Sbjct: 205 DRILKLFSEEMDTRRD--PMAVGVSIGVAICPGDGTTAERLYGNADTALYRAKQTGKG-I 261

Query: 256 VCFSDIENNTC 266
            CF D E +  
Sbjct: 262 ACFFDAEMDAA 272


>gi|300714940|ref|YP_003739743.1| Diguanylate cyclase [Erwinia billingiae Eb661]
 gi|299060776|emb|CAX57883.1| Diguanylate cyclase [Erwinia billingiae Eb661]
          Length = 427

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 88/168 (52%), Gaps = 8/168 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQIND 144
             L    + ++  +R D L+GL N +AF  +L          ++++++F D+D FK++ND
Sbjct: 237 THLQRENDSLAHQARHDALTGLPNRTAFEQALHTLMNNPQTADRVAVLFIDVDRFKEVND 296

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
            +GH  GD V+   + +L         V RLGG+EFA    G  + ++AA +A ++ + +
Sbjct: 297 TYGHAAGDNVLTETAHRLRGRLRKDDLVARLGGDEFAVLLAGIENGEQAARMAENVIEAM 356

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
               I ++ G ++  ++S G+A   +      +I +AD A+Y  K+ G
Sbjct: 357 -LEPIRLTDGKTVAQSLSIGVALAKNHRTGEAMIAQADAAMYHIKELG 403


>gi|254490544|ref|ZP_05103730.1| hypothetical protein MDMS009_876 [Methylophaga thiooxidans DMS010]
 gi|224464288|gb|EEF80551.1| hypothetical protein MDMS009_876 [Methylophaga thiooxydans DMS010]
          Length = 1123

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 81/181 (44%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S + E+  +  +I + +  D L+ L N   F   L         +NEKL ++F D+D FK
Sbjct: 669 SDISEVKEAQAKIERHANYDILTDLPNRRLFTDRLQQAILRCGRHNEKLCLMFLDLDRFK 728

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            +ND  GH  GD+++  ++ ++         V RLGG+EF         +  A  +A  L
Sbjct: 729 DVNDTLGHEFGDQLLKQMAVRIQACVREVDTVARLGGDEFTIILSEFDGKSHAVNIAQKL 788

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
              IE   I +    ++ +T S GI            +I  AD+A+Y AK  G +    +
Sbjct: 789 ISEIEK-PITVQE-QTLRVTTSVGITFYPDDAIDSGMLIQNADRAMYAAKDMGGSAFKFY 846

Query: 259 S 259
           +
Sbjct: 847 T 847


>gi|37678827|ref|NP_933436.1| sensory box/GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37197568|dbj|BAC93407.1| sensory box/GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 601

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 55/193 (28%), Positives = 86/193 (44%), Gaps = 13/193 (6%)

Query: 78  ISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEK 128
           + ++   IS   L E  L  +   + +LS +D L+ + N   F   L             
Sbjct: 386 VLIMARDISERYLAEQKLEAANLELEKLSFMDSLTQVSNRRRFDEQLNTLWFHHAREKLP 445

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGS 187
           L+I+  DID+FK+ ND +GH  GD+ +  ++     V   +   V R GGEEFA     +
Sbjct: 446 LTIMLCDIDFFKEFNDRYGHQAGDEALIQVATVFSQVVSRSSDCVARYGGEEFALLLPNT 505

Query: 188 SEQEAAILANDLRKIIENSQINISSGP-SIHITISAG-IAERCHKEPISTI-IYRADQAL 244
           + + A  +A  +   I  S I       +  +TIS G ++     E +  + +  AD AL
Sbjct: 506 TAEGALKVAEKIHAYIAESNIAHQGSKIAGRVTISIGLVSYIPSPEDVPDMGVALADSAL 565

Query: 245 YVAKKSGRNRVVC 257
           Y AK  GRNR   
Sbjct: 566 YQAKSDGRNRTCV 578


>gi|148259870|ref|YP_001233997.1| diguanylate cyclase/phosphodiesterase [Acidiphilium cryptum JF-5]
 gi|146401551|gb|ABQ30078.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidiphilium cryptum JF-5]
          Length = 809

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 8/184 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQ 141
           GS +  +  S  RI  L++ D L+ L+N +AF   L            ++++ D+D FK 
Sbjct: 362 GSDVTAMQRSRQRIDFLAQHDTLTELINRAAFGVLLDRALAPGNACGAALLYLDLDQFKA 421

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND++GH +GD ++  ++ +L           RLGG+EFA     +S  +A  +A+ + +
Sbjct: 422 VNDSYGHGLGDILLRAVASRLRNAIRETDTAARLGGDEFAVLLPSNSRIDATAMADRIIE 481

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTII-YRADQALYVAKKSGRNRVVCFSD 260
            +  S+     G S+ I +S GIA          ++   AD ALY AK  GR     F  
Sbjct: 482 RL--SRPYRFDGVSVEIGVSIGIALAPADGDRQDLLFRNADLALYRAKNDGRGTWRLFDQ 539

Query: 261 IENN 264
             + 
Sbjct: 540 AMDR 543


>gi|88705283|ref|ZP_01102994.1| GGDEF domain protein [Congregibacter litoralis KT71]
 gi|88700373|gb|EAQ97481.1| GGDEF domain protein [Congregibacter litoralis KT71]
          Length = 365

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/186 (30%), Positives = 80/186 (43%), Gaps = 18/186 (9%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           L        +EL +   ++  LS  D L+G LN   F   L             LS++  
Sbjct: 172 LRERVARDQRELEVVNQQLLSLSITDPLTGALNRRGFNDRLKAELAGAARTGTPLSVLML 231

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D+FK  ND FGHP GD  +   S+ L         V R GGEEFA     +  + A I
Sbjct: 232 DVDHFKHYNDAFGHPAGDVALRKTSEALRACCRDNDSVSRYGGEEFALILPATDAEGAGI 291

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS------TIIYRADQALYVAK 248
           +A  +R+ +   +     G    IT+S G A               T++  AD ALY AK
Sbjct: 292 MAERVRQAVAKLE-----GLKQEITVSVGAASAPAAVLTDLAMVATTLVAFADSALYRAK 346

Query: 249 KSGRNR 254
           + GR+R
Sbjct: 347 EGGRDR 352


>gi|327485587|gb|AEA79993.1| extracellular solute-binding protein, family 3/GGDEF domain protein
           [Vibrio cholerae LMA3894-4]
          Length = 461

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/214 (26%), Positives = 106/214 (49%), Gaps = 4/214 (1%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            I   ++ +   Y    + +    L++  +  +L L        ++L  +  ++S L++ 
Sbjct: 245 RILSRWVHIETIYPRYLMPILASGLLLSIVIYTLQLRRTVRLRTQQLEEANQKLSYLAKT 304

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ + N  +F   L +   +   L+++ FDID FK IND FGH  GD  I F+   + 
Sbjct: 305 DSLTDIANRRSFFEYLEAEQTRSGSLTLMVFDIDDFKTINDRFGHGAGDNAICFVVGCVR 364

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
               +  +  R+GGEEFA  A G + +E+  LA  + + +   +  +++  S+ +TIS G
Sbjct: 365 QALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKKWVVNAQHSLSLTISLG 424

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            A   H     ++ + AD  +Y  K++G+N+VV 
Sbjct: 425 CAFYLHPARPFSL-HDADSLMYEGKRNGKNQVVF 457


>gi|78221271|ref|YP_383018.1| diguanylate cyclase [Geobacter metallireducens GS-15]
 gi|78192526|gb|ABB30293.1| diguanylate cyclase (GGDEF domain) [Geobacter metallireducens
           GS-15]
          Length = 580

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 73/172 (42%), Gaps = 9/172 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L  +Y   +  +  D L+GL N   F       ++    Y    S+   DID+FKQ ND 
Sbjct: 404 LKRNYEIAASEAFTDPLTGLFNLRQFWLSLDHELARARRYGRHCSLAMIDIDFFKQYNDR 463

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD+V+  +S   V          R GGEEF      +    A I    LR+ +  
Sbjct: 464 HGHLRGDEVLKEISKLFVASIRNSDIAARYGGEEFVVIMPETGRDLALIAGEKLRRAVAE 523

Query: 206 SQINISSGPSIH-ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
              ++        +T+S GIA           ++  ADQALY AK  GR+RV
Sbjct: 524 HPFSLQETQPGGLLTVSVGIATFPDDAATAREMVDAADQALYRAKGLGRDRV 575


>gi|330504384|ref|YP_004381253.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328918670|gb|AEB59501.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 509

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 80/180 (44%), Gaps = 13/180 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S  +EL  +  R+  L+  D L+GL N  +F  +L             L+++  D+D FK
Sbjct: 318 SAREELLDANARLEVLASQDALTGLANRRSFDQALEVEIRRAQRRGSCLALMLLDVDLFK 377

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           + ND++GH  GD+ +  +++ L      P     R GGEE       +  + A  +A   
Sbjct: 378 RYNDHYGHLAGDECLRSVAEVLKRCVRRPGDLAARYGGEELVVILPNTDGEGAEAVAIGF 437

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIST-----IIYRADQALYVAKKSGRNR 254
            + +    +     P   IT S G+A        S      +I  ADQALY AK +GRNR
Sbjct: 438 MESLAQCNLPHQDSPFQRITASVGVASLMPDTQDSAKLAMKLIEAADQALYRAKANGRNR 497


>gi|254517113|ref|ZP_05129171.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [gamma proteobacterium NOR5-3]
 gi|219674618|gb|EED30986.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [gamma proteobacterium NOR5-3]
          Length = 609

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 29/198 (14%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKL----SIVFFDIDYFKQINDN 145
           L    +R+  L+  D L+ L N  +F   L      +++L    +++F D+D FK+IND+
Sbjct: 138 LKRQEDRLRYLAYFDPLTSLPNRRSFNEQLNRILKRSQRLNTFSALLFIDLDNFKRINDS 197

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMF------------------VGRLGGEEFAAAALGS 187
            GH  GD+++  +S +L+                          + RLGG+EF       
Sbjct: 198 IGHGRGDRLLVEISKRLINELREDDAISYYSDSSAEEEHDGNTEIARLGGDEFTVVLADV 257

Query: 188 -SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALY 245
               +   +A  + K +    I + +   + +T S GIA      E   +++  AD A+Y
Sbjct: 258 LHTDDVERIALRIMKTLSE-PIPLQTHNPV-VTPSIGIAMYPQDGEDAESLVRNADTAMY 315

Query: 246 VAKKSGRNRVVCFSDIEN 263
            AK  GR     +++  N
Sbjct: 316 AAKADGRACFRFYNEEMN 333


>gi|157145625|ref|YP_001452944.1| RNase II stability modulator [Citrobacter koseri ATCC BAA-895]
 gi|157082830|gb|ABV12508.1| hypothetical protein CKO_01371 [Citrobacter koseri ATCC BAA-895]
          Length = 691

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 8/185 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +    E     ++ IV+ D+D FK
Sbjct: 247 SGTDITEERRTQERLRVLANTDTITGLPNRNAIHELINDAIENAGDNQVGIVYLDLDNFK 306

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + RLGG+EF   A  +S+     +A+ + 
Sbjct: 307 RVNDAYGHMFGDQLLQAVSLAILSCLEENQLLARLGGDEFIVLATQTSQGSLEAMASRIL 366

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +   Q        ++   S GIA    H     ++I  AD A+Y AK+ GR +   FS
Sbjct: 367 TRLR--QPFRIGLIEVYTGCSIGIALAPQHGHDSESVIRNADTAMYTAKEGGRGQFCVFS 424

Query: 260 DIENN 264
              N 
Sbjct: 425 PEMNQ 429


>gi|149907664|ref|ZP_01896411.1| regulatory components of sensory transduction system [Moritella sp.
           PE36]
 gi|149809334|gb|EDM69263.1| regulatory components of sensory transduction system [Moritella sp.
           PE36]
          Length = 518

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 11/180 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            +  L  +  RI  L   D L+GL     F+  L            +++++F D+D FK+
Sbjct: 330 DITALKEAKERIYHLVYHDTLTGLPTRKLFMEHLLKALAGARRNTTRVAVLFVDLDGFKK 389

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLR 200
           +ND FGH  GD ++   + +L         V R+GG+EF       ++ +  A +A  + 
Sbjct: 390 VNDTFGHDAGDLLLKKTAARLCACIRDVDTVARIGGDEFLILLTNLADNDSIAEIAERMI 449

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + + +          ++IT S GIA      E    ++ +AD A+Y  K+ G+N      
Sbjct: 450 QAVAS--PYNLDSLEMNITASIGIALYPDDAESSQALVKQADLAMYEIKRRGKNNYAFAD 507


>gi|21113915|gb|AAM42003.1| response regulator [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573042|gb|AAY48452.1| response regulator [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 339

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/200 (26%), Positives = 89/200 (44%), Gaps = 12/200 (6%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN 126
           + + + ++   + L +G      L+ +  +  R+S    +D L+G+ N  AF   L    
Sbjct: 137 QRIIIAVLGFVLLLAVGIWLDLQLRRMHRNEARLSSEVWVDALTGIANRRAFDHRLSEAL 196

Query: 127 E-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGE 178
           +        LS++  D+D+FK  ND +GH  GD  +  ++  +      +     R GGE
Sbjct: 197 QDAVHTQAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCARRSDDIAARYGGE 256

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKE---PIS 234
           EF      +    A  LA+ +R  +    +   + P S H+T+S G A     E      
Sbjct: 257 EFGMILPHTDVAGALRLADAIRTAVAELGLMHLTSPTSAHVTVSVGAATFEPGETPLTPD 316

Query: 235 TIIYRADQALYVAKKSGRNR 254
            I+  AD ALY AK+ GR+R
Sbjct: 317 AIVRDADGALYRAKQGGRDR 336


>gi|21242684|ref|NP_642266.1| GGDEF family protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21108156|gb|AAM36802.1| GGDEF family protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 980

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 10/172 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L  +   +S  +  D L+GLLN +  +++L             L++V  D+D+FK +N
Sbjct: 799 RDLEAARAELSLKATHDELTGLLNRAGILAALREMLLHAEHQGRPLAVVLIDLDHFKLVN 858

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD V+A +  ++  +      +GR GGEE  A   G +      L    R I 
Sbjct: 859 DQHGHLAGDAVLAGVGRRMDTLMRGDDRIGRYGGEELLALLPGLNLDATHRLDALHRGIC 918

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  I    G  +H+T S G+A     E +  ++ RAD ALY AK+SGRNRV
Sbjct: 919 GDYPI---DGGWLHVTCSVGVAWFQRGETLEQLLARADAALYRAKRSGRNRV 967


>gi|332800172|ref|YP_004461671.1| diguanylate cyclase [Tepidanaerobacter sp. Re1]
 gi|332697907|gb|AEE92364.1| diguanylate cyclase [Tepidanaerobacter sp. Re1]
          Length = 221

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 103/224 (45%), Gaps = 26/224 (11%)

Query: 48  IFLFYIGLTPFYGLEYILV-----ENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102
           IF  +IG+    G+  + +     +NL L+  S+TI +++    G   K+L+I       
Sbjct: 13  IFFLWIGIGLSSGIIQLYMHKKCGKNL-LMTASLTIQIIMWLGLGYSFKKLYI------- 64

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIA 156
            +  D L+ L N     + L    ++L      S+   DID FK+IND FGH  GDKV+ 
Sbjct: 65  FAYQDELTNLWNRRYLYTRLKDEMKRLKQNKVLSLAIIDIDNFKRINDTFGHLFGDKVLI 124

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++  L         V R GGEEF      +  + A I+   +RKIIEN           
Sbjct: 125 EMACILQKNLRKNDIVARWGGEEFIIVLPKTDVKGAKIVFERIRKIIENYDF------GC 178

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            IT+S GIA          +I  AD+ALY AK+  +N +  + +
Sbjct: 179 KITVSGGIAFVGEDIEADKLIGMADEALYEAKRR-KNLIAVYGE 221


>gi|332527977|ref|ZP_08404011.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2]
 gi|332112551|gb|EGJ12344.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2]
          Length = 229

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 9/167 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
           + +  LS  D L+GL N  AF       I  +    E   ++  DID+FK +ND  GH  
Sbjct: 35  DALVDLSSRDALTGLANRRAFQLALEREIDRVARSGEPALMLVADIDHFKLVNDRHGHAA 94

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+VI  ++  L         V R+GGEEFA             +A  +R+ +E   +++
Sbjct: 95  GDEVIRAVAAVLADSVRPMDLVARVGGEEFAIILPNCPHTFGLTVAERIRQKVERMSVSV 154

Query: 211 SSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255
            +G ++ +++S G A      +   +  + RAD  LY AK +GRNRV
Sbjct: 155 GNGRALSVSVSVGGAFAPQWVRSTPALWLERADLQLYAAKAAGRNRV 201


>gi|325923977|ref|ZP_08185566.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           gardneri ATCC 19865]
 gi|325545560|gb|EGD16825.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           gardneri ATCC 19865]
          Length = 507

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 14/179 (7%)

Query: 95  ISYNRISQLSR---IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
            S NR+  L+     D L+G+ N                  +  LSI F D+D FK++ND
Sbjct: 316 ESENRMRHLAEQASRDALTGVFNRHQLGTALEHEFELASRQSWPLSIAFIDLDDFKRVND 375

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH +GD+V+   +  L  +  T   V R GGEEF      ++   A ++   +     
Sbjct: 376 SHGHLIGDEVLRNFAQTLQRMVRTSDLVARYGGEEFLVILPNTTADAALMVIERILVETA 435

Query: 205 NSQINISSGPSIHITISAGIAERCHK----EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +       +HIT SAG+A         E I  ++  AD  LY +K  GRNRV  + 
Sbjct: 436 RTPMAQLQSGPLHITFSAGLATHGGGGRQFESIEHLLQAADSTLYRSKHRGRNRVTAYD 494


>gi|294676202|ref|YP_003576817.1| diguanylate cyclase/phosphodiesterase [Rhodobacter capsulatus SB
           1003]
 gi|294475022|gb|ADE84410.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodobacter capsulatus SB 1003]
          Length = 1245

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 83/188 (44%), Gaps = 19/188 (10%)

Query: 92  ELFISY---NRI----SQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDI 136
           EL  +Y    R+      L+  D L+ L N   F   + +              ++  D+
Sbjct: 794 ELERAYALAERMRGENEHLALHDGLTRLPNRRYFDRHIETRLRAAELGGPRDCVLIQIDL 853

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAIL 195
           D+FKQIND  GH  GD+V+  ++D +        F  RLGG+EF      GS+E  A  +
Sbjct: 854 DHFKQINDTLGHEAGDRVLMRVADLMRSSLQADDFAARLGGDEFCLLLAPGSTEVRARKV 913

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNR 254
              LRK ++  +     G    I+ S G+    +   ++  +   AD ALY AK +GRNR
Sbjct: 914 LERLRKGLD--EPLRYRGHPCRISASFGVVIAKNITDLAEELQLYADAALYRAKATGRNR 971

Query: 255 VVCFSDIE 262
           V  F    
Sbjct: 972 VEIFDHAM 979


>gi|240138244|ref|YP_002962716.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           domains [Methylobacterium extorquens AM1]
 gi|240008213|gb|ACS39439.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           domains [Methylobacterium extorquens AM1]
          Length = 794

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 11/183 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           ++   L+    +  +I  L+  D L+GL N ++F   L            KL+++  D+D
Sbjct: 345 VAVRDLRARRQAERQIQFLAHHDALTGLANRASFGKRLDQEMRAADAGGRKLAVLCLDLD 404

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK++ND FGH  GD ++  ++  +         + RLGG+EFA         EA  LA 
Sbjct: 405 RFKEVNDLFGHAAGDAMLEGVARIVSAELDDTQMMARLGGDEFAVLMPCGGPSEAGRLAE 464

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            + + + + + + + GP   I  S G+A      +  + ++  AD ALY AK  GR    
Sbjct: 465 RILEALRSGRAD-AGGP--QIATSIGVALYPDDAQERAALLSYADTALYRAKSEGRGTYR 521

Query: 257 CFS 259
            F 
Sbjct: 522 FFE 524


>gi|167624500|ref|YP_001674794.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella halifaxensis HAW-EB4]
 gi|167354522|gb|ABZ77135.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella halifaxensis HAW-EB4]
          Length = 415

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 8/162 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ + + +D L+ + N   F       ++ +      LS+   DID+FK++ND +GH VG
Sbjct: 248 KLWEQANLDYLTNVFNRRYFFNFYQEKLTEVAQKQGSLSLALLDIDFFKKVNDTYGHDVG 307

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+   + +L   F     V R+GGEEF     G   ++A  L +  R  +E + I  S
Sbjct: 308 DEVLIEFASRLKQSFSQHFTVARIGGEEFVVGFKGLHIEKAYALIDRFRMQLEITPIETS 367

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            G  + IT+S G+ E  H E +  ++ RAD  LY AK +GRN
Sbjct: 368 KGA-LTITVSTGVTEFGHDETVDELLKRADTGLYEAKSAGRN 408


>gi|330950454|gb|EGH50714.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 320

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 24/190 (12%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
            L ++ ++++ L++ D L+GL N      S+     +        S++  DID+FK+ ND
Sbjct: 122 RLKMAMDQLNLLAQTDGLTGLANRRFLDESIEREWLRVRRNQGAFSLLLLDIDFFKRYND 181

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           ++GH  GD+ +  ++  +      +   V R GGEEFA     +  + A  LA ++ + I
Sbjct: 182 HYGHLQGDECLIAIAHAVKHCVHRSTDLVARYGGEEFAVLLPDTGAEGACRLAEEIVEHI 241

Query: 204 ENSQINISSGPSIHITISAGIAER----------------CHKEPISTIIYRADQALYVA 247
                   +     +T+S G+A R                      + ++  AD+ALY A
Sbjct: 242 HGLARLHETSDLGRVTVSVGVASREAGALPIPRPGVAAGTAPDPIAAALLAEADRALYRA 301

Query: 248 KKSGRNRVVC 257
           K  GRN    
Sbjct: 302 KHEGRNCSRF 311


>gi|153800684|ref|ZP_01955270.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|124123819|gb|EAY42562.1| GGDEF family protein [Vibrio cholerae MZO-3]
          Length = 469

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/214 (26%), Positives = 106/214 (49%), Gaps = 4/214 (1%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            I   ++ +   Y    + +    L++  +  +L L        ++L  +  ++S L++ 
Sbjct: 253 RILSRWVHIETIYPRYLMPILASGLLLSIVIYTLQLRRTVRLRTQQLEEANQKLSYLAKT 312

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ + N  +F   L +   +   L+++ FDID FK IND FGH  GD  I F+   + 
Sbjct: 313 DSLTDIANRRSFFEYLEAEQTRSGSLTLMVFDIDDFKTINDRFGHGAGDNAICFVVGCVR 372

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
               +  +  R+GGEEFA  A G + +E+  LA  + + +   +  +++  S+ +TIS G
Sbjct: 373 QALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKKWVVNAQHSLSLTISLG 432

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            A   H     ++ + AD  +Y  K++G+N+VV 
Sbjct: 433 CAFYLHPARPFSL-HDADSLMYEGKRNGKNQVVF 465


>gi|146306677|ref|YP_001187142.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas mendocina ymp]
 gi|145574878|gb|ABP84410.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas mendocina ymp]
          Length = 625

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 10/184 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIV 132
           +L +   + +         +  L+  D L+ L N   F++ L +          +  +I+
Sbjct: 440 VLWHGFMTDITARKQIEGELQALATTDFLTQLANRRHFMAQLEAVLARLQRSPGQSAAIL 499

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            FD+D+FK IND +GH VGD+ +   +  L          GRLGGEEFA     +   +A
Sbjct: 500 MFDLDHFKAINDRWGHDVGDQALRHFAAILRGQLRKTDTAGRLGGEEFAVVLSEADLPKA 559

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSG 251
              A  ++  +  + I +  G  I + +S GI+        +   + R+D ALY AK+ G
Sbjct: 560 VQFATRVQGELARTPI-LPDGEQIFLAVSVGISSLSSCDTSVEAALSRSDIALYCAKRGG 618

Query: 252 RNRV 255
           RNR+
Sbjct: 619 RNRI 622


>gi|330721162|gb|EGG99281.1| hypothetical protein imdm_1302 [gamma proteobacterium IMCC2047]
          Length = 556

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 54/198 (27%), Positives = 93/198 (46%), Gaps = 15/198 (7%)

Query: 77  TISLLLGYISGSI----LKE--LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--- 127
           TI+ +LG I+  I    L+E  L ++   ++  +  D L+GL+N   F   L S  E   
Sbjct: 71  TINRMLGIIASDIEERELREQALLMNETELAYQANHDILTGLVNRRGFERHLRSALESSQ 130

Query: 128 ----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
               +  + + D+D FK IND  GH  GD+++  +S  L         + RLGG+EF   
Sbjct: 131 MDHAEHVLCYLDLDQFKVINDTCGHIAGDELLRQVSAVLAGGIRRHDVLARLGGDEFGIL 190

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQ 242
                 + A+ +AN L  ++E+ +          + +S G +A  C +     ++ +AD 
Sbjct: 191 MEHCDLEHASEIANSLCSLVESYRFEWEE-QRFSVGVSIGVVAINCRENDTIDLLKKADV 249

Query: 243 ALYVAKKSGRNRVVCFSD 260
           A Y AK +GR+    + +
Sbjct: 250 ACYAAKAAGRHCTRLYEE 267


>gi|326403202|ref|YP_004283283.1| hypothetical protein ACMV_10540 [Acidiphilium multivorum AIU301]
 gi|325050063|dbj|BAJ80401.1| hypothetical protein ACMV_10540 [Acidiphilium multivorum AIU301]
          Length = 792

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 8/184 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQ 141
           GS +  +  S  RI  L++ D L+ L+N +AF   L            ++++ D+D FK 
Sbjct: 345 GSDVTAMQRSRQRIDFLAQHDTLTELINRAAFGVLLDRALAPGNACGAALLYLDLDQFKA 404

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND++GH +GD ++  ++ +L           RLGG+EFA     +S  +A  +A+ + +
Sbjct: 405 VNDSYGHGLGDILLRAVASRLRNAIRETDTAARLGGDEFAVLLPSNSRIDATAMADRIIE 464

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTII-YRADQALYVAKKSGRNRVVCFSD 260
            +  S+     G S+ I +S GIA          ++   AD ALY AK  GR     F  
Sbjct: 465 RL--SRPYRFDGVSVEIGVSIGIALAPADGDRQDLLFRNADLALYRAKNDGRGTWRLFDQ 522

Query: 261 IENN 264
             + 
Sbjct: 523 AMDR 526


>gi|225862602|ref|YP_002747980.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102]
 gi|225789508|gb|ACO29725.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102]
          Length = 567

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 89/175 (50%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQA-- 250

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 251 PFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 305


>gi|156973148|ref|YP_001444055.1| hypothetical protein VIBHAR_00827 [Vibrio harveyi ATCC BAA-1116]
 gi|156524742|gb|ABU69828.1| hypothetical protein VIBHAR_00827 [Vibrio harveyi ATCC BAA-1116]
          Length = 626

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/214 (30%), Positives = 97/214 (45%), Gaps = 22/214 (10%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           L ++    + +  I      +  YI+  + + E      ++  LS  D L+ L N   F 
Sbjct: 421 LNHVFTAIMRIQAIMAKSGKVSYYITSLVDISERKELEEKLRNLSERDGLTNLWNRRKFE 480

Query: 120 SSLGSYNEKL---------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
             L  +   L          +  FDIDYFK+IND  GH  GD+VI  +++ L+       
Sbjct: 481 EQLSQHANMLERYPNTPTTCLALFDIDYFKRINDEMGHDEGDRVICSVAETLLSGVRNTD 540

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
           FV R+GGEEFA     ++ +EA ++ N LR  +E S           +T+S G ++    
Sbjct: 541 FVARVGGEEFAVLMPHTTIEEAEVVLNRLRVAVELSG-------DGSVTVSVGYSDLTSD 593

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVC---FSDI 261
              S     AD ALY +K +GRNRV     F DI
Sbjct: 594 RTRS--YKCADIALYESKSAGRNRVSICHSFDDI 625


>gi|120406535|ref|YP_956364.1| PAS/PAC sensor-containing diguanylate cyclase [Mycobacterium
           vanbaalenii PYR-1]
 gi|119959353|gb|ABM16358.1| diguanylate cyclase with PAS/PAC sensor [Mycobacterium vanbaalenii
           PYR-1]
          Length = 448

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 55/216 (25%), Positives = 94/216 (43%), Gaps = 19/216 (8%)

Query: 56  TPFYGLEYILVENLSLVIISITISLLLGY--------ISGSILKELFISYNRISQLSRID 107
           +P++G+          + + ++IS L+GY             +  +      + +++ +D
Sbjct: 234 SPYHGVVSFEAPTGKRLHVDLSISSLIGYHDPNGHYVAIAPNITHMVEQQMVLQEMANMD 293

Query: 108 CLSGLLNHS----AF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+GLLN      A    +         +S+   DID+FK+IND  GH VGD V+  ++ 
Sbjct: 294 ALTGLLNRRSGQIALEIELQKAAESGAPISVAMGDIDHFKRINDRLGHAVGDDVLRSVAG 353

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            L           R GGEEF      +   +A  L   +R  +  +    S      +T+
Sbjct: 354 SLRDGLRRNDVAIRWGGEEFLVFLPNTPLDDAVPLTERIRNHVATTPQIASD----SVTM 409

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S G+ +    E ++  + R D A+Y AK  GR+RVV
Sbjct: 410 SFGVGQWRPGESVAAFVERIDAAMYEAKSGGRDRVV 445


>gi|303240603|ref|ZP_07327118.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Acetivibrio cellulolyticus CD2]
 gi|302591840|gb|EFL61573.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Acetivibrio cellulolyticus CD2]
          Length = 534

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 13/211 (6%)

Query: 64  ILVENLSLVIISIT---ISLLLGYISGSILKEL-FISYNRISQLSRIDCLSGLLNHSAFI 119
           ++ +N + ++ SI+   ++L++  I  S + E    +  R+  ++ ID ++GL NH  F 
Sbjct: 122 LITQNTAGLLFSISATRVALIIACIIVSYISENGKKNIERLEFIANIDGVTGLFNHRYFQ 181

Query: 120 SSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           + L          N  L ++  D+D FK+ ND +GH  GD ++A  S   +        V
Sbjct: 182 TRLDEEIVKAYDANSSLGMIMIDLDNFKKYNDIYGHKSGDLLLAKTSQVFMDETREQDIV 241

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCH-K 230
            R GG+EFA     S  +   ++   +R   E  +  +        +T+SAG +      
Sbjct: 242 CRYGGDEFAILLPDSDSESTLLVIERIRNAFEKMTDFDEFCSLPDKVTLSAGYSIYPDLA 301

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +    +I +AD ALY AK  GRN V  + DI
Sbjct: 302 KNKDDLIEQADTALYQAKNMGRNNVQLYKDI 332


>gi|262192395|ref|ZP_06050548.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
 gi|262031748|gb|EEY50333.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
          Length = 914

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 113/228 (49%), Gaps = 22/228 (9%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI------------- 95
           F +   + P +     ++    ++ +++ +SL++  I     +EL++             
Sbjct: 677 FSYVFIIEPHWWQRKEVIVMAGMLFLALAVSLVMWRIRILKRRELYLVEQVALQTQKLRL 736

Query: 96  SYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
              +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIND + H
Sbjct: 737 QAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIALLDIDHFKQINDRYSH 796

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+ I  +S +L+   G    V R GGEEF    +G   Q+A      LR  IE   +
Sbjct: 797 IIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVG-DPQQAWGYFEKLRCKIEQVDL 855

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  +   +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 856 SAVA-TGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 902


>gi|154248964|ref|YP_001409789.1| diguanylate cyclase [Fervidobacterium nodosum Rt17-B1]
 gi|154152900|gb|ABS60132.1| diguanylate cyclase [Fervidobacterium nodosum Rt17-B1]
          Length = 1195

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 66/177 (37%), Positives = 99/177 (55%), Gaps = 11/177 (6%)

Query: 88   SILKELFISYNR---ISQLSRIDCLSGLLNH---SAFISSL-GSYNEKLSIVFFDIDYFK 140
            ++L+ELF    R   + + + ID L+GL N    + FI+ L  + +++ SI   DID FK
Sbjct: 1018 TLLQELFSGQLRGVILRERANIDSLTGLYNRWKFNQFINELFDTKSKEFSIFIADIDNFK 1077

Query: 141  QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +IND +GH VGD V+  ++  L         V R GGEEF       S+ EAA L + +R
Sbjct: 1078 KINDTYGHMVGDSVLKNIAKILKEHVRDEGLVARYGGEEFVGIVY-KSKYEAAKLCDTIR 1136

Query: 201  KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + IE   + I       +TIS G+A+   KE ++ ++  ADQ LY AK++G+NRVV 
Sbjct: 1137 ENIEKESLKIFG---FRVTISIGMADVNEKENVTELLGLADQRLYKAKEAGKNRVVW 1190


>gi|332161935|ref|YP_004298512.1| putative phosphodiesterase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666165|gb|ADZ42809.1| putative phosphodiesterase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 864

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 10/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           S+  E  +S  +I  L+  D L+GL N + F       I+     N  L+++  ++D FK
Sbjct: 421 SLAMERELSRKQIQHLAFYDSLTGLPNRTQFLVYAKQAIALAAEMNYPLAVLVINLDRFK 480

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND+ GH  GD+++A ++ +L         +GRL G+EF       + Q+  +    + 
Sbjct: 481 QVNDSLGHAAGDELLAAMAQRLRDSLPKNDIIGRLSGDEFIIMLTSCTMQQTTVRVEKML 540

Query: 201 KIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++  SQ    +  +I  + S GI+        + T++  AD A++ AK  GR     FS
Sbjct: 541 SLL--SQPCQIANMNIIPSASVGISLYPENGMEMDTLMNHADIAMHKAKNMGRGHFNFFS 598

Query: 260 DIENN 264
              NN
Sbjct: 599 AEMNN 603


>gi|192360502|ref|YP_001982276.1| abfX GGDEF domain-containing protein [Cellvibrio japonicus Ueda107]
 gi|190686667|gb|ACE84345.1| abfX GGDEF domain protein [Cellvibrio japonicus Ueda107]
          Length = 297

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 10/165 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +LS +D L+ + N +A   +L         Y + LS++  D+D+FK+IND FGH  GD+V
Sbjct: 132 RLSMLDPLTRIGNRTAMDIALNRELQIAERYRQDLSLLLIDVDHFKRINDQFGHTRGDQV 191

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  +           R GGEEF      ++ + A I+A  +R+ + ++Q+   +G 
Sbjct: 192 LKEVTGIIQQSSRGSDLTFRYGGEEFVVILGKTNTRGAHIIAERIRERVASTQLEH-NGH 250

Query: 215 SIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S   T+S GIA   R  K+ +  +  RAD+ALY AK+ GRNRV+ 
Sbjct: 251 SFQSTVSIGIASHLRDKKDSVQDLFERADKALYCAKRDGRNRVIL 295


>gi|254229043|ref|ZP_04922463.1| ggdef domain protein [Vibrio sp. Ex25]
 gi|151938334|gb|EDN57172.1| ggdef domain protein [Vibrio sp. Ex25]
          Length = 349

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 83/179 (46%), Gaps = 9/179 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDN 145
           L I   ++  L+  D L+G+ N   F+  + S   +         +   D+D FK +ND 
Sbjct: 172 LHIQIMKMEHLATTDDLTGIPNRREFMRQIESRLTEYRTQGIDFHVAILDLDNFKSLNDR 231

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GDK +    + +         + R+GGEEFA      S QEA      +R  +E 
Sbjct: 232 FGHDAGDKSLIHAVNTIQSHLLDCDLLARVGGEEFAIVLRSRSSQEALNTLETIRNALET 291

Query: 206 SQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + I  S G  +  T S G+ + C   +    ++ RAD ALY AK++GRNRV      EN
Sbjct: 292 TTIQHS-GRDMSFTASIGVTQVCSLDDSFEPLVKRADLALYKAKETGRNRVEVHKTEEN 349


>gi|146308578|ref|YP_001189043.1| cyclic nucleotide-binding protein [Pseudomonas mendocina ymp]
 gi|145576779|gb|ABP86311.1| cyclic nucleotide-binding protein [Pseudomonas mendocina ymp]
          Length = 312

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/180 (29%), Positives = 79/180 (43%), Gaps = 12/180 (6%)

Query: 89  ILKELFISYNRI----SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           +L E     NR+     Q + +D L+G  N                  +E LS++  D+D
Sbjct: 132 LLCERVRKGNRLILDSEQNANVDTLTGCFNRRWLEHVFERESTRCAFNDEPLSLLMLDVD 191

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK  ND  GH  GD  +  ++  L         + R GGEEF       S + A  +  
Sbjct: 192 HFKAYNDQHGHLAGDYALCLVAHTLRSQLRPKDSLIRFGGEEFVILLPEISAESARGIGE 251

Query: 198 DLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            LR  +E  +      G    +TIS G+A+   K+ +  +I RAD ALY AK+ GRN + 
Sbjct: 252 RLRVSLEQIASFYSPVGILPGVTISIGLAQMQQKDSLQGLIARADAALYQAKQQGRNCLC 311


>gi|88800590|ref|ZP_01116151.1| sensory box sensor/GGDEF/EAL domain protein [Reinekea sp. MED297]
 gi|88776645|gb|EAR07859.1| sensory box sensor/GGDEF/EAL domain protein [Reinekea sp. MED297]
          Length = 619

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/267 (22%), Positives = 121/267 (45%), Gaps = 14/267 (5%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           L +++        + P   ++ F++F   +++ + +       +   + F  +  +L+  
Sbjct: 98  LFVFVALIGGHRYYFPLVAIVLFNVFLMGWLSELAWFNPSLSSHSLSSAFDIIAILLLCA 157

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISS 121
               ++S   S L+  +   I+K +  S+  ++ L+  D L+GL N        +A    
Sbjct: 158 FGTYVMSRDNSRLVEGLQTEIVK-VEQSHQEMTYLANHDVLTGLPNRTSAEMAFNAMTKR 216

Query: 122 LGSYNEKLS-IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           LG   + L+ + F D+D FK++ND  GH VGD+ +  +SD+L     T   + R+GG+EF
Sbjct: 217 LGRQEDTLAAVFFIDLDEFKEVNDTLGHDVGDQYLVQVSDRLQEALRTTDQIFRIGGDEF 276

Query: 181 AAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIY 238
                   +  +   +A  LR  +  S         I+ + S G +      +     + 
Sbjct: 277 LLFLENIKQIDDLVTIAEKLRANL--SLPVTVDERLINCSGSIGMVVVPTDADSYQEAVK 334

Query: 239 RADQALYVAKKSGRNRVVCFS-DIENN 264
           RAD A+Y +K+SG+N    ++ D+E +
Sbjct: 335 RADIAMYRSKESGKNCFHFYNPDMEQD 361


>gi|332141558|ref|YP_004427296.1| GGDEF domain-containing PAS signal transduction protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551580|gb|AEA98298.1| GGDEF domain-containing PAS signal transduction protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 794

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
            SI  E   +   I + +  D L+GL N +  +  L           +++++ F D+D F
Sbjct: 351 ASIAIERERASELIWKQANFDTLTGLPNRNLMLDHLQLALKTADREGDRVAVAFLDLDNF 410

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND  GH VGD+++   ++++         V RLGG+EF        +     I+   
Sbjct: 411 KDINDTLGHDVGDQLLIECAERIKQCLRANDTVSRLGGDEFVVILNSIETLSSIDIVVQK 470

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           +  +I   +  + +   +H + S G+         I  ++  ADQA+Y AK  G+N    
Sbjct: 471 ILDVI--LKPYLINVERVHTSASLGVTLYPDDARDIKGLLKNADQAMYGAKDLGKNSYKY 528

Query: 258 FSDIENNTC 266
           ++       
Sbjct: 529 YTQDMQAVA 537


>gi|238059540|ref|ZP_04604249.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
 gi|237881351|gb|EEP70179.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
          Length = 582

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 6/178 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +   + E+  + + +++L+  D L+ L N  A ++ L            +++  DID FK
Sbjct: 199 TAHDITEIRRAQDELTRLAERDPLTDLPNRRALLARLDDLLASGGGRSGALLLIDIDNFK 258

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH VGD V+  L+  LV    +   +GRLGG+EFA      +  EA  +A  L 
Sbjct: 259 DINDVHGHAVGDDVLRVLARLLVRHLPSGTVLGRLGGDEFAVVLPDVTAGEALAVAEGLC 318

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                S + +     + +T+S G A     +     +  AD ALY AK +GRNR   +
Sbjct: 319 DATVRSPVPLVD-AGLRVTLSIGAASLEPGDTRDVALAHADLALYEAKNAGRNRARLY 375


>gi|212637004|ref|YP_002313529.1| PAS:GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212558488|gb|ACJ30942.1| PAS:GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 845

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 109/234 (46%), Gaps = 18/234 (7%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL------LGYISG--SILKELF 94
            F  +++   +G   ++G  +   +N ++    +TIS +      + Y     + L    
Sbjct: 347 AFFESLWQSLLGSGKWHGEIWNRRKNGAVFPQLLTISAVYGDEHQIRYFVAVFADLSTQK 406

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFG 147
            +   ++ L+  D L+ L N  A  S L            +L +++ D+D FKQ+N++FG
Sbjct: 407 KNEAELAHLAFHDPLTKLPNRMAVTSRLEQEIRLANRSEYQLGVIYIDVDLFKQVNESFG 466

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDLRKIIENS 206
           H +GD+V+  LS +L +  G+   + RLGG+EFA         +  +L  + L +I E  
Sbjct: 467 HVIGDEVLVELSQRLTLAIGSLATIARLGGDEFAVILPNIESSDMLLLRLSKLPQIFER- 525

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              +     + +T S G+A         ST++  AD A++ AK+ GRN    ++
Sbjct: 526 PFMLGEHAPVRLTASMGVALYPQDGRDSSTLLVNADAAMHRAKQDGRNNYAFYT 579


>gi|146305758|ref|YP_001186223.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas mendocina ymp]
 gi|145573959|gb|ABP83491.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas mendocina ymp]
          Length = 540

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 8/181 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
           + ++        +      D L+GL NH+  +              + L+    DID+FK
Sbjct: 358 ATVRNRAARARNLKARMVRDSLTGLYNHTHTLQLLEDACFRARRDEQPLAFAMLDIDHFK 417

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GHP+GD+VI  L+  L         +GR GGEEFA     + EQ A  +  ++R
Sbjct: 418 KVNDTYGHPMGDRVIKSLALFLKQRLRKTDHIGRYGGEEFAVVLPDTDEQSALRVLEEIR 477

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +         +    +  T S GIA        + +  RAD+ALY AK  GRNRV  ++ 
Sbjct: 478 QRFAEIHYP-AQPQDLSCTFSCGIAMLQPGLDGNALSKRADEALYTAKHGGRNRVELYNP 536

Query: 261 I 261
           +
Sbjct: 537 L 537


>gi|94263469|ref|ZP_01287282.1| GGDEF:EAL [delta proteobacterium MLMS-1]
 gi|93456199|gb|EAT06338.1| GGDEF:EAL [delta proteobacterium MLMS-1]
          Length = 535

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 75/198 (37%), Gaps = 21/198 (10%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           I  E     + + QL+  D L+ L N       L           +  +++  D+D FK 
Sbjct: 80  IEAEKQAREDEVHQLAFYDFLTNLPNRRLLQDRLEQAFASSERSGQYGAVILLDLDNFKN 139

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG------SSEQEAAIL 195
           +ND  GH  GD ++   + +L         V RLGG+EF            ++    + +
Sbjct: 140 VNDTRGHRTGDLILQMTARRLRETVREDDTVARLGGDEFVILLSNLSTRSETAISRVSRV 199

Query: 196 ANDLRKIIEN---SQINISSGPS----IHITISAGIAER-CHKEPISTIIYRADQALYVA 247
           A  +R  +            GPS     H+  S GI     H+E    +   AD A+Y A
Sbjct: 200 AEKIRLTLARPFQLDTPEQGGPSESGEFHLGSSLGITLFHGHEESTDNLFKYADTAMYQA 259

Query: 248 KKSGRNRVVCFSDIENNT 265
           K++GRN    F       
Sbjct: 260 KEAGRNTARFFDPAMQKA 277


>gi|262395461|ref|YP_003287314.1| GGDEF family protein [Vibrio sp. Ex25]
 gi|262339055|gb|ACY52849.1| GGDEF family protein [Vibrio sp. Ex25]
          Length = 652

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 86/179 (48%), Gaps = 12/179 (6%)

Query: 89  ILKEL--FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
           +L +L       R+  L+  D L+GL N S F   L           ++ ++++ D+D F
Sbjct: 467 VLTDLSGAKEMERLEYLAHHDALTGLANRSKFHLELEELVQRSGYLRDEFAVLYLDLDGF 526

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND +GH  GD+V+  ++++L         + RL G+EF      ++++    +A  L
Sbjct: 527 KEVNDTYGHDAGDEVLKKVAERLTSATRHSDLIARLSGDEFVMLVNPANQKVVTRIAEQL 586

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            + +         G S+ + +S G+      E   + ++  AD A+Y AKK+G+ + + 
Sbjct: 587 LESV--CTPIKYKGNSLKVGVSIGVKLVGVNERDATRVLKSADTAMYQAKKAGKGQAIL 643


>gi|62317533|ref|YP_223386.1| response regulator PleD [Brucella abortus bv. 1 str. 9-941]
 gi|83269514|ref|YP_418805.1| response regulator PleD [Brucella melitensis biovar Abortus 2308]
 gi|148558083|ref|YP_001257597.1| response regulator PleD [Brucella ovis ATCC 25840]
 gi|189022788|ref|YP_001932529.1| response regulator PleD [Brucella abortus S19]
 gi|237817081|ref|ZP_04596073.1| diguanylate cyclase (GGDEF) domain-containing protein [Brucella
           abortus str. 2308 A]
 gi|254691030|ref|ZP_05154284.1| response regulator PleD [Brucella abortus bv. 6 str. 870]
 gi|254695663|ref|ZP_05157491.1| response regulator PleD [Brucella abortus bv. 3 str. Tulya]
 gi|254698814|ref|ZP_05160642.1| response regulator PleD [Brucella abortus bv. 2 str. 86/8/59]
 gi|254732261|ref|ZP_05190839.1| response regulator PleD [Brucella abortus bv. 4 str. 292]
 gi|256111466|ref|ZP_05452486.1| response regulator PleD [Brucella melitensis bv. 3 str. Ether]
 gi|256256215|ref|ZP_05461751.1| response regulator PleD [Brucella abortus bv. 9 str. C68]
 gi|260544769|ref|ZP_05820590.1| GGDEF:Response regulator receiver [Brucella abortus NCTC 8038]
 gi|260756626|ref|ZP_05868974.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 6 str. 870]
 gi|260760056|ref|ZP_05872404.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 4 str. 292]
 gi|260763295|ref|ZP_05875627.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260882443|ref|ZP_05894057.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 9 str. C68]
 gi|261216063|ref|ZP_05930344.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 3 str. Tulya]
 gi|265992970|ref|ZP_06105527.1| response regulator receiver modulated diguanylate cyclase [Brucella
           melitensis bv. 3 str. Ether]
 gi|297249572|ref|ZP_06933273.1| two-component system protein [Brucella abortus bv. 5 str. B3196]
 gi|62197726|gb|AAX76025.1| response regulator/GGDEF domain protein [Brucella abortus bv. 1
           str. 9-941]
 gi|82939788|emb|CAJ12796.1| GGDEF:Response regulator receiver [Brucella melitensis biovar
           Abortus 2308]
 gi|148369368|gb|ABQ62240.1| response regulator/GGDEF domain protein [Brucella ovis ATCC 25840]
 gi|189021362|gb|ACD74083.1| GGDEF:Response regulator receiver [Brucella abortus S19]
 gi|237787894|gb|EEP62110.1| diguanylate cyclase (GGDEF) domain-containing protein [Brucella
           abortus str. 2308 A]
 gi|260098040|gb|EEW81914.1| GGDEF:Response regulator receiver [Brucella abortus NCTC 8038]
 gi|260670374|gb|EEX57314.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 4 str. 292]
 gi|260673716|gb|EEX60537.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260676734|gb|EEX63555.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 6 str. 870]
 gi|260871971|gb|EEX79040.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 9 str. C68]
 gi|260917670|gb|EEX84531.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 3 str. Tulya]
 gi|262763840|gb|EEZ09872.1| response regulator receiver modulated diguanylate cyclase [Brucella
           melitensis bv. 3 str. Ether]
 gi|297173441|gb|EFH32805.1| two-component system protein [Brucella abortus bv. 5 str. B3196]
          Length = 456

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 81/174 (46%), Gaps = 9/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L  S  R    S  D L+GL N           ++      + LSI+  D+D+FKQ+N+ 
Sbjct: 280 LRQSMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQ 339

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD V+   S +L         + R GGEEF      +  Q A  +A  +R I+  
Sbjct: 340 YGHGAGDHVLREFSGRLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRGIVAE 399

Query: 206 SQINISSGP-SIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +  G     +T+S G+ A R   + +  +  RA  AL  AK+SGRNR+V 
Sbjct: 400 APFVLDDGKRRASLTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIVL 453


>gi|296284762|ref|ZP_06862760.1| diguanylate cyclase [Citromicrobium bathyomarinum JL354]
          Length = 365

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 88/175 (50%), Gaps = 9/175 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           +L  + +R    +++D L+GL N  AF   L +         E LS+ F DID FK IND
Sbjct: 183 KLRKNLDRARHDAQVDYLTGLPNRRAFEEVLETSYLEAQDTGEPLSVAFCDIDQFKAIND 242

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD++I  +++ L  +     ++ R GGEEF     G   QEA    ++ R+ + 
Sbjct: 243 THGHEAGDRIIREIAETLSSLCAKDCYIARHGGEEFVLLFRGVEPQEALAQLDEAREALA 302

Query: 205 NSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + ++    +  P   +T S GIA+          +  ADQALY AK+SGRNR+  
Sbjct: 303 SRRMVNRRTEKPFGMVTFSGGIADVLQCADPREALAAADQALYCAKRSGRNRIHL 357


>gi|229095277|ref|ZP_04226269.1| Sensory box/GGDEF [Bacillus cereus Rock3-29]
 gi|229114225|ref|ZP_04243646.1| Sensory box/GGDEF [Bacillus cereus Rock1-3]
 gi|228669245|gb|EEL24666.1| Sensory box/GGDEF [Bacillus cereus Rock1-3]
 gi|228688136|gb|EEL42022.1| Sensory box/GGDEF [Bacillus cereus Rock3-29]
          Length = 569

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 89/175 (50%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  I++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIAGKKEFGIIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTNEHTQDEMRQLATSVLSCFQA-- 252

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 253 PFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 307


>gi|218233533|ref|YP_002370191.1| ggdef family protein [Bacillus cereus B4264]
 gi|218161490|gb|ACK61482.1| ggdef family protein [Bacillus cereus B4264]
          Length = 352

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 9/214 (4%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           ++  I +   Y      +  + L +IS  I+  + +IS + + +    +  + Q + ID 
Sbjct: 137 YILSILIPALYIWLIKEIHIVGLYLISSIITGYITFISANYVLQSNELFQTMKQYATIDA 196

Query: 109 LSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GL N   F   +  +       N+ L ++  DID+FK +ND +GHP GD+V+  +   
Sbjct: 197 LTGLGNVRQFDLEMNRHISNKHLKNDSLCLLLIDIDHFKHVNDTYGHPAGDEVLKQVGHI 256

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L  +   P  V R GGEEFA             +    R  +E     +  G  I IT+S
Sbjct: 257 LREMSAFPDLVFRKGGEEFALLIPRKGIAYGIHVGEQTRIAVEKHSFELLDGTKIKITVS 316

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G++E          I  AD ALY +K++GRN+V
Sbjct: 317 VGVSEYEGAS--EQFIQAADDALYYSKRNGRNKV 348


>gi|114047809|ref|YP_738359.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113889251|gb|ABI43302.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 726

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +L  +  ++  ++  D L+ L N     +             + +++V  D+DYFK++ND
Sbjct: 545 DLEAANRKLKDMAERDSLTNLYNRRYTENQFLKIQDLCERGQDAIAVVLLDLDYFKKVND 604

Query: 145 NFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD+ +  +++ L   F      + R GGEEF       +  +     ND R+ +
Sbjct: 605 TYGHLAGDECLRVMAEVLSRHFKRDVDLLCRYGGEEFILILPMCNSLKVEQHLNDFREKL 664

Query: 204 ENSQI-NISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +  I N +   +  +T+S G  IA+  +   +   + +AD+ LY AK+ GRNRVVC
Sbjct: 665 ASVIITNPADQVTFSVTVSIGAIIADATYSTTLDVWLKQADENLYKAKEQGRNRVVC 721


>gi|315123539|ref|YP_004065545.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Pseudoalteromonas sp. SM9913]
 gi|315017299|gb|ADT70636.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Pseudoalteromonas sp. SM9913]
          Length = 368

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 14/250 (5%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFLFY---IGLTPFYGLE-YILVENLSLVIISIT 77
           F P        + F  ++++ + ++ I + Y   +G   +  +E    V   SLV++   
Sbjct: 117 FYPVAAFAILGVKFGAWLSSAMLLSCIVMLYGPDMGQVIYGAVEKTRFVAAFSLVLVFSF 176

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS----AFISSLGSYNE---KLS 130
           I     + S   + ++ +      Q +  D L+G  N       F+    S  E    LS
Sbjct: 177 IGEYFRHRSHLAIADITLEQ---KQHAHTDQLTGAPNRRFITSHFLKLAASRPEHYLPLS 233

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           I+  D+D FKQ+ND++GH  GD V+   +  L   F       R GGEEF       +  
Sbjct: 234 ILLIDLDKFKQLNDSYGHDFGDTVLIEFTKLLESQFPATALKARYGGEEFVVILPQQTTL 293

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           EA+ILAN  R+ ++N  +       + +T S GIA+    +  +  + +ADQ LY AK  
Sbjct: 294 EASILANRFRECVQNHVMLTDKHQRVSLTCSMGIAQANSVDDYNNALKQADQYLYSAKAQ 353

Query: 251 GRNRVVCFSD 260
           GRN+VV   D
Sbjct: 354 GRNKVVSVHD 363


>gi|294011726|ref|YP_003545186.1| GGDEF-family protein [Sphingobium japonicum UT26S]
 gi|292675056|dbj|BAI96574.1| GGDEF-family protein [Sphingobium japonicum UT26S]
          Length = 602

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 7/173 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNF 146
               + + Q++  D L+GL N   F +          S    L+ +  DID+FK+ ND  
Sbjct: 421 LRLRDALQQMAMADPLTGLANRRRFDAVFKELVVRAESALTPLACLMVDIDHFKRFNDTH 480

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD V+  +   L           RLGGEEF     G ++ +A   A  +++ ++  
Sbjct: 481 GHDAGDAVLRAVGGVLDDALREKDCAFRLGGEEFVLLMPGFAQDQAIDRAIQVQQKLQEL 540

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++         IT S G+A         T++  AD AL  AK  GRN++V  +
Sbjct: 541 RVEHRGEELGPITASFGLAVFPDHGKAETLVRTADAALLRAKNQGRNQIVIAT 593


>gi|222086325|ref|YP_002544858.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221723773|gb|ACM26929.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 415

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 92/177 (51%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQIND 144
           E  +   ++  L+  D L+GL N   F                  S+   DID+FK++ND
Sbjct: 233 ETLLQLKQLRVLAASDYLTGLYNRRYFYDQGPRIVNECLRRQRPSSVAILDIDHFKKLND 292

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH +GD+V+  ++D+L  +F      + RLGGEEFA     +  + A  + +D+R  +
Sbjct: 293 TYGHEIGDQVLKAVADRLRSLFEGSDSLLSRLGGEEFAILFTETDSRAATAICDDVRVSL 352

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            N ++N +    + +T+S G+AE    E     +  ADQ LY+AK +GRN+V  +SD
Sbjct: 353 SNLKVN-ADDEELSVTVSIGVAEIAGYEAFENYLNAADQFLYMAKHNGRNQV--YSD 406


>gi|39936022|ref|NP_948298.1| putative diguanylate cyclase/phosphodiesterase [Rhodopseudomonas
           palustris CGA009]
 gi|39649876|emb|CAE28398.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
           [Rhodopseudomonas palustris CGA009]
          Length = 882

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/186 (32%), Positives = 90/186 (48%), Gaps = 21/186 (11%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQIN 143
           + E   S +RI  L+  D L+GL N S+F   LG         ++L++++ DID FK +N
Sbjct: 436 ITERKRSDSRIHHLAHYDDLTGLPNRSSFRKHLGEALNLIEPGDQLALLYIDIDEFKIVN 495

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GHPVGD+++  L+D+L    G   +V RLGG+EFA              A+D+R+ +
Sbjct: 496 DTLGHPVGDQLLQALADRLRNCVGPDDYVARLGGDEFAVVMAD---------ASDIREFV 546

Query: 204 ENSQINISS-----GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              Q  +       G  +    S GIA    H   +  +I +AD ALY AK  GR     
Sbjct: 547 AKLQATLRDSIDCAGQVLSPDASIGIALAPDHSCEVDDLIAKADLALYAAKAEGRRTYRY 606

Query: 258 FSDIEN 263
           F    +
Sbjct: 607 FMPEMD 612


>gi|325284815|ref|YP_004264277.1| diguanylate cyclase [Deinococcus proteolyticus MRP]
 gi|324316530|gb|ADY27642.1| diguanylate cyclase [Deinococcus proteolyticus MRP]
          Length = 355

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 103/229 (44%), Gaps = 22/229 (9%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
           +A  +      +F + +  F+G+         L  +S  I+LLL +  GS   EL     
Sbjct: 120 LAGWVSAGAYLVFLVSIFYFHGVHQ-------LPYLSAGITLLLLHYVGSHSYELLNVRQ 172

Query: 99  RISQLSR---IDCLSGLLNHSAFISSLGSYNEKL---------SIVFFDIDYFKQINDNF 146
           R   L+     D L+GLLN       L    +++         +++  DID+FK IND  
Sbjct: 173 RAQHLAHLAAYDHLTGLLNRYGMEEKLRELWDRVQSHGNGDDATLLLLDIDHFKAINDQH 232

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+V+  +S  L         VGR GGEEF       S  EA +L + L   +  +
Sbjct: 233 GHDVGDRVLRRVSRALTEACPEG-QVGRWGGEEFLVVLPPISPSEAKLLPSRLTACLAAT 291

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              I  G    +T+S G  +    + +  +I  ADQ LY AK+ GR+RV
Sbjct: 292 GRAIPGGQ--PVTLSGGGVQFSEADSLPQLIALADQRLYAAKRLGRDRV 338


>gi|324113159|gb|EGC07134.1| EAL domain-containing protein [Escherichia fergusonii B253]
          Length = 663

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 89/186 (47%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E  ++  R+  L+  D ++GL N +A    + +      N ++ IV+ D+D FK
Sbjct: 219 SGTDITEERVAQERLRVLANTDTITGLPNRNAIHELIDNAIVQTTNAQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  ++  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHMFGDQLLQAVALAILSCLDNDQTLARHGGDEFIVLAPDTSQGALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   +    S GIA    H      +I  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVQTGCSVGIALSPLHGHDSDCLIRSADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           S   N 
Sbjct: 396 SPEMNQ 401


>gi|312963449|ref|ZP_07777931.1| GGDEF domain protein [Pseudomonas fluorescens WH6]
 gi|311282255|gb|EFQ60854.1| GGDEF domain protein [Pseudomonas fluorescens WH6]
          Length = 457

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 116/283 (40%), Gaps = 35/283 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIF-----LFYIGL 55
           + +S  + +  WL  E    +       +    +    I  +I  A  +     L    L
Sbjct: 168 LEQSYPEAVLGWLA-EIRWPALHGSWMNLIQLSYPMFLIGFLILAAQYWYQPRPLHAAQL 226

Query: 56  TPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
               GL ++L +   L   ++I  S ++  I+  +  E +       Q++  D L+GL  
Sbjct: 227 VGLLGLFWMLPKTFILPFTLNIMCSQVMLMIAAGVAHEAY-------QMAFRDELTGLPG 279

Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
             A    +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  V G       
Sbjct: 280 RRALNERMQRLGRNYVLAMTDVDHFKRFNDTHGHDVGDQVLRLVASKLSKVSGGGRAYRY 339

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-------------------GPS 215
            G EEFA    G +  E      +LR+II +  I + +                     S
Sbjct: 340 GG-EEFAVVYAGKTLDECMPHLEELRQIIADYAIKLRNPDNRPQDDFQGRQRRAAGGASS 398

Query: 216 IHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +TIS G+AER   +     ++  AD+ALY AK +GRN VV 
Sbjct: 399 VSVTISIGVAERQVEQRTPEEVLKSADEALYAAKGAGRNCVVA 441


>gi|304406093|ref|ZP_07387750.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9]
 gi|304344677|gb|EFM10514.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9]
          Length = 586

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 36/205 (17%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQ 141
           + +EL  +  ++ Q++  D L+G  N    +         L  ++   +I+ FDID FK+
Sbjct: 372 MQEELSTANRKLEQMAVTDGLTGCFNRRYLMGKIESELPKLAEHHASFAIMLFDIDLFKK 431

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND FGH  GD V+   + ++  + G    + R GGEEF       + + AA +A  +R 
Sbjct: 432 VNDTFGHLAGDAVLVRTAQKIQELIGPHDILARYGGEEFTVFMPNVTSEHAANMAEKIRD 491

Query: 202 IIENSQINIS--------------------SGPSIHITISAGIA---------ERCHKEP 232
            I  +++ IS                    +G  + +T+S G+                 
Sbjct: 492 EIARNEVVISEQHLVGSHHKSEPMSTLALLNGKKLAVTVSMGVVVEHKLKPSKMMDPANY 551

Query: 233 ISTIIYRADQALYVAKKSGRNRVVC 257
           +  ++  AD+ALY AK +GRN+V+C
Sbjct: 552 LRQLLAVADEALYEAKNAGRNQVIC 576


>gi|225851185|ref|YP_002731419.1| diguanylate cyclase/phosphodiesterase [Persephonella marina EX-H1]
 gi|225646290|gb|ACO04476.1| diguanylate cyclase/phosphodiesterase [Persephonella marina EX-H1]
          Length = 632

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 103/219 (47%), Gaps = 11/219 (5%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            + +    +   + ++ I+ +  + ++I I+  L+   +S   + + F    ++ ++   
Sbjct: 170 GLIVLDFSIEKLHEIKKIVRKIQNALLIGISFVLVSFIVS---IYQFFRYEKKLKKM-YY 225

Query: 107 DCLSGLLNHSAFISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           D L+G  N      +   +     ++   DID+FK+IND +GH +GD V+  L+ ++   
Sbjct: 226 DPLTGAYNRLFLYENSDLFKFYPFTVFVIDIDHFKKINDTYGHEIGDFVLKELTKRINRC 285

Query: 166 FGTPMFVGRLGGEEFAAAALGSS-----EQEAAILANDLRKIIENSQINISSGPSIHITI 220
                 + R GGEEF      +      ++    LA  ++  IE    +I +   + +T+
Sbjct: 286 IRDNDILIRYGGEEFLLLIRANPVSPEYKKNILNLAKRIKNEIEFYPFDIEN-IKLKVTV 344

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           S GI    H++ I   I  AD ALY AK+ GRNR+  ++
Sbjct: 345 SIGINFYEHEKSIEEAIKHADIALYSAKQKGRNRIEVYN 383


>gi|73538085|ref|YP_298452.1| GGDEF [Ralstonia eutropha JMP134]
 gi|72121422|gb|AAZ63608.1| GGDEF [Ralstonia eutropha JMP134]
          Length = 400

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 104/234 (44%), Gaps = 11/234 (4%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           F++F A       +   +  +   Y L+ + +    L + ++ +  L     G++L    
Sbjct: 155 FALFFALGHTARGLLSAFSLMGDPYSLQSLGLNTFFLTLGALVMPALT---MGAVLMIHD 211

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147
               R+  ++  D L+G+++  A+                  +++  DID FK +ND +G
Sbjct: 212 TMVRRLEAIANTDGLTGVMSRKAWEDMASRALAAGARGGVPPALLIIDIDRFKGVNDTYG 271

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+   +        +   +GRLGGEEFA     +   +A ++A  +R   E   
Sbjct: 272 HAAGDAVLKGFASLAGAQVRSTDSLGRLGGEEFAVVLPATRVADAVVIAERIRAGAEQHA 331

Query: 208 INI-SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           + I   G  +  TIS G+A     E ++ +  RAD ALY AK  GRNR+V   D
Sbjct: 332 VRIGEHGTIVRYTISGGVACLRPGETLAQLSARADAALYRAKLEGRNRIVVHED 385


>gi|34499192|ref|NP_903407.1| hypothetical protein CV_3737 [Chromobacterium violaceum ATCC 12472]
 gi|34105043|gb|AAQ61399.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 382

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 104/243 (42%), Gaps = 12/243 (4%)

Query: 32  SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK 91
           S++ ++ + + I+I   + F             L E    ++ S+           ++L+
Sbjct: 140 SLYLALMVGSAIYILVQWEFLQSFHRQLQDTANLSERNESMLASVQALHRESMGKKALLE 199

Query: 92  E----LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           +    L  +  ++ +L+  D L+G  N  A    L              S+   D+D+FK
Sbjct: 200 KRQQVLQSALQQMKKLAESDALTGCYNQRALRERLDRCAEASLASGRPWSLAMLDLDHFK 259

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND FGH  GD+++   +  +         + R GGEEFA  A      E   L  ++R
Sbjct: 260 QVNDTFGHLAGDRLLCQTARLIESRLPEGCILARYGGEEFAVLAPDRDGLELLSLMEEVR 319

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            ++  S +       +  T+S G+      + +   + RAD ALY AK+ GRNRV   S 
Sbjct: 320 TLLSTSSLEGLPVGRVQ-TMSVGVVGCQPGDLVRQCLKRADVALYRAKQGGRNRVCLASP 378

Query: 261 IEN 263
           +++
Sbjct: 379 MDD 381


>gi|72162617|ref|YP_290274.1| hypothetical protein Tfu_2218 [Thermobifida fusca YX]
 gi|71916349|gb|AAZ56251.1| GGDEF [Thermobifida fusca YX]
          Length = 448

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 85/174 (48%), Gaps = 9/174 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           +  + + ++   +R D  +GLLN  A+                 L+++  DID+FK++ND
Sbjct: 253 QRSLLFQQLQTAARTDPKTGLLNAVAWERVAKTELTRALRTGCPLAVLIIDIDHFKKVND 312

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD+V+  ++  L         +GR GGEEF     G+   EA   A  LR  + 
Sbjct: 313 THGHLVGDQVLLNVATMLSQQLRPYDVIGRFGGEEFVVLLPGADMAEACRTAERLRTQVG 372

Query: 205 NSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                I+   +I +T+S G+A  R H   +  ++  AD ALY AK SGR+RV  
Sbjct: 373 RMAQPIND-ITITVTVSIGVALLRVHGRDLLELMAAADLALYRAKDSGRDRVCL 425


>gi|113969753|ref|YP_733546.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-4]
 gi|113884437|gb|ABI38489.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-4]
          Length = 1430

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 88/184 (47%), Gaps = 7/184 (3%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQIND 144
            S +         + +L+  D L+GL N S    +LG+   K    +++  D+D FK+IND
Sbjct: 982  SDISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLGNLVNKEITHALMVLDLDNFKRIND 1041

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKII 203
            + GH +GD+++  +S ++  V      + RLGG+EFA     +S+  A A +A  + +  
Sbjct: 1042 SLGHQIGDQLLKLVSVRIKSVVPKNTSIYRLGGDEFAIVLDKTSDISACAAIAGRVIEAF 1101

Query: 204  ENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDIE 262
            +   I       + + +S GI      E     ++ +AD A+Y AK +G N    +S+  
Sbjct: 1102 KT--IFEIGNEQLVLGVSIGIVFYPEDEQSEQALLRKADIAMYHAKSAGGNCYQFYSESL 1159

Query: 263  NNTC 266
            N   
Sbjct: 1160 NQHA 1163


>gi|114046982|ref|YP_737532.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-7]
 gi|113888424|gb|ABI42475.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-7]
          Length = 1430

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 88/184 (47%), Gaps = 7/184 (3%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQIND 144
            S +         + +L+  D L+GL N S    +LG+   K    +++  D+D FK+IND
Sbjct: 982  SDISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLGNLVNKEITHALMVLDLDNFKRIND 1041

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKII 203
            + GH +GD+++  +S ++  V      + RLGG+EFA     +S+  A A +A  + +  
Sbjct: 1042 SLGHQIGDQLLKLVSVRIKSVVPKNTSIYRLGGDEFAIVLDKTSDISACAAIAGRVIEAF 1101

Query: 204  ENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDIE 262
            +   I       + + +S GI      E     ++ +AD A+Y AK +G N    +S+  
Sbjct: 1102 KT--IFEIGNEQLVLGVSIGIVFYPEDEQSEQALLRKADIAMYHAKSAGGNCYQFYSESL 1159

Query: 263  NNTC 266
            N   
Sbjct: 1160 NQHA 1163


>gi|332529739|ref|ZP_08405693.1| diguanylate cyclase [Hylemonella gracilis ATCC 19624]
 gi|332040760|gb|EGI77132.1| diguanylate cyclase [Hylemonella gracilis ATCC 19624]
          Length = 437

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 60/273 (21%), Positives = 109/273 (39%), Gaps = 46/273 (16%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI-- 85
           +I++++   + +  V+   N    ++    F  L Y ++    L +++  + L   ++  
Sbjct: 166 IIFWALLIVLMVTRVVLAQNFTELFLV---FEQLIYNVLALQVLGMVAAHVGLFAAFMNM 222

Query: 86  -SGSILKELFI-------SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS 130
            + ++  EL         S  ++  +S  D L+ L N   F  +L           + L+
Sbjct: 223 HTAALNAELRSRSTALENSLEQLRWISETDALTDLANRRKFNETLAAEWARAMRRGQPLA 282

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSE 189
           ++  DID+FK  ND++GHP GD+ +  ++  L            R GGEEFA     +  
Sbjct: 283 LLMIDIDHFKLYNDHYGHPQGDRCLERVARVLSSSAQRPGDLAARYGGEEFALILPDTDS 342

Query: 190 QEAAILANDLRKIIENSQINISSG--PSIHITISAGIAERCHK----------------- 230
             A  LA  +   +   +I  ++   P   +T+S G+A +                    
Sbjct: 343 AGAERLAQKILDAVRAQRIPHAATPLPEGIVTLSIGVASQRPGKLARPRESDASVKQGAG 402

Query: 231 ------EPISTIIYRADQALYVAKKSGRNRVVC 257
                   +   I  AD ALY AK  GRNR+  
Sbjct: 403 SPSAAVTDMERFIKFADAALYDAKHQGRNRLAV 435


>gi|193216167|ref|YP_001997366.1| diguanylate cyclase [Chloroherpeton thalassium ATCC 35110]
 gi|193089644|gb|ACF14919.1| diguanylate cyclase [Chloroherpeton thalassium ATCC 35110]
          Length = 437

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 107/244 (43%), Gaps = 11/244 (4%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISIT-ISLLL 82
           P   + YF  +   ++A    ++      I L   +  EY + EN+      I   +LL 
Sbjct: 195 PAKSLEYFEAYHKFYLAFDAELSVSKPLEIVLDTCHSKEYHISENVQRAYEEIKKYNLLY 254

Query: 83  GYISGS--ILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVF 133
             +S    +++E       + +  R D L+GL N                 Y   L++V 
Sbjct: 255 AELSQQCKLVEEHKERIKTLERQIREDSLTGLQNRRYLDLQLSLEFERARRYGNNLTLVM 314

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FKQIND F H +GDKV+  ++            + R GGEEF      +  + A 
Sbjct: 315 ADIDHFKQINDRFSHLIGDKVLKEIAKIFRRRCRRIDIIARYGGEEFVLLLPMTDAENAY 374

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           ++   +R  IEN   +    P + +TIS GI++    E    ++  AD+ LY AK SGRN
Sbjct: 375 MVCERIRVAIENYHWS-KIHPELSVTISMGISDSLGIENNHDLLAAADKKLYEAKNSGRN 433

Query: 254 RVVC 257
           RV  
Sbjct: 434 RVCY 437


>gi|134099511|ref|YP_001105172.1| PAS:GGDEF [Saccharopolyspora erythraea NRRL 2338]
 gi|133912134|emb|CAM02247.1| PAS:GGDEF [Saccharopolyspora erythraea NRRL 2338]
          Length = 914

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 8/180 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQI 142
           S + + +   +  R+   +  D L+GL N +  +  L         ++++F D+D FK I
Sbjct: 477 SFTDITDSRAARERLEYEATHDPLTGLANRTLALRHLAVSRDRTRAIAVLFIDLDNFKLI 536

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRK 201
           ND+ GH VGD V+  + ++L         VGRLGG+EF       S+ +    LA  L  
Sbjct: 537 NDSLGHGVGDDVLRIVGERLFRTSREEDLVGRLGGDEFVVLVHDESDDDVLRELATGLLA 596

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFS 259
            +  ++     G  +H+  S GI      +  +   ++  AD A+Y AK  G  R   F 
Sbjct: 597 AL--TEPIHVQGRQLHVNGSIGIVLSRPGDTRAGPELLRDADVAMYQAKTRGGGRYEFFD 654


>gi|118476310|ref|YP_893461.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus thuringiensis str. Al Hakam]
 gi|118415535|gb|ABK83954.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus thuringiensis str. Al Hakam]
          Length = 569

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 89/175 (50%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQA-- 252

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 253 PFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 307


>gi|160877050|ref|YP_001556366.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|160862572|gb|ABX51106.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|315269254|gb|ADT96107.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS678]
          Length = 577

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 11/184 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            S+   L  S+ ++ +L+  D L+ L+N   F       I+     ++ L+++  D+D F
Sbjct: 123 SSMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNRAIARAKRCHDYLAVILLDLDDF 182

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILAND 198
           K IND  GH  GD ++  ++ +L  V      + RLGG+EF      +  +    I+AN 
Sbjct: 183 KAINDTLGHQTGDVLLLKVAARLSEVLRDGDIIARLGGDEFVVLVTDNDYKYFPMIVANR 242

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           L K+ E+          + I  S G+A         S ++  AD A+Y AKK GRN++  
Sbjct: 243 LLKVFEDE--FCLGDNDVLIGASIGVAFYNEAASNSSELMKCADIAMYRAKKMGRNQIQF 300

Query: 258 FSDI 261
           +S+ 
Sbjct: 301 YSEA 304


>gi|87125686|ref|ZP_01081530.1| sensory protein with histidine kinase domain [Synechococcus sp.
           RS9917]
 gi|86166662|gb|EAQ67925.1| sensory protein with histidine kinase domain [Synechococcus sp.
           RS9917]
          Length = 643

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 99/234 (42%), Gaps = 18/234 (7%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG--------SILKELFI 95
           F A ++   I    + G  +    N  ++   +TI+ +L             S + + + 
Sbjct: 410 FYAQMWTAIIQRCYWSGEIWNRHRNGQIMRHELTITAVLDARHQIANFVGLLSDVSDRYR 469

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148
              ++  L+  D L+GL N +     L          N  + ++F D++ FK +ND +GH
Sbjct: 470 QQEQMQYLATHDPLTGLANRALLAEELERSLALARRENRGVGLLFMDLNAFKPVNDRYGH 529

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQ 207
             GD ++  L+ +L         + R GG+EF      + S +   +LA  L   I+   
Sbjct: 530 AAGDLLLQSLARRLKDCLRDSDTLCRQGGDEFVVLVPNAPSMESLLVLARKLHHAIQQPF 589

Query: 208 INISS-GPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I+     + I++S G+A    H +   ++I  AD A+Y AK   + R++   
Sbjct: 590 EAITGLSEPVRISVSIGVARWPDHADDADSLIRAADAAMYRAKSMHKPRILVAD 643


>gi|332991788|gb|AEF01843.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Alteromonas sp. SN2]
          Length = 468

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 89/183 (48%), Gaps = 9/183 (4%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVF--F 134
           L  +     +EL     ++ +L+  D L+ + N  AF  +L      ++    S++    
Sbjct: 272 LEDLVNQRTRELRNVNVKLEKLAYFDPLTDIPNRRAFEEALDKSTHFAHRHGYSLLIGIA 331

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D+FK++ND FGH  GD V+  ++  +   F     +GR+GGEEFA   +     EA  
Sbjct: 332 DVDHFKKLNDTFGHAFGDDVLVAVAKSMKQFFRQEDGIGRVGGEEFAFCMVLPGSHEAID 391

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGR 252
           +   LRK +E    ++ +     +TIS G        P     ++  AD+ALY AK+ GR
Sbjct: 392 ILERLRKRVELISSSLPALKGYDVTISIGAYYVSGVNPSETKEMVSIADEALYRAKREGR 451

Query: 253 NRV 255
           NRV
Sbjct: 452 NRV 454


>gi|229523051|ref|ZP_04412463.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae TM 11079-80]
 gi|229339901|gb|EEO04911.1| ABC-type amino acid transport/signal transduction component [Vibrio
           cholerae TM 11079-80]
          Length = 469

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 57/214 (26%), Positives = 106/214 (49%), Gaps = 4/214 (1%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            I   ++ +   Y    + +    L++  +  +L L        ++L  +  ++S L++ 
Sbjct: 253 RILSRWVHIETIYPRYLMPILASGLLLSIVIYTLQLRRTVRLRTQQLEEANQKLSYLAKT 312

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ + N  +F   L +   +   L+++ FDID FK IND FGH  GD  I F+   + 
Sbjct: 313 DSLTDIANRRSFFEYLEAEQARSGSLTLMVFDIDDFKTINDRFGHGAGDNAICFVVGCVR 372

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
               +  +  R+GGEEFA  A G + +E+  LA  + + +   +  +++  S+ +TIS G
Sbjct: 373 QALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKKWVVNAQHSLSLTISLG 432

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            A   H     ++ + AD  +Y  K++G+N+VV 
Sbjct: 433 CAFYLHPARPFSL-HDADSLMYEGKRNGKNQVVF 465


>gi|126172753|ref|YP_001048902.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS155]
 gi|125995958|gb|ABN60033.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS155]
          Length = 577

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 11/184 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            S+   L  S+ ++ +L+  D L+ L+N   F       I+     ++ L+++  D+D F
Sbjct: 123 SSMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNRAIARAKRCHDYLAVILLDLDDF 182

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILAND 198
           K IND  GH  GD ++  ++ +L  V      + RLGG+EF      +  +    I+AN 
Sbjct: 183 KAINDTLGHQTGDVLLLKVAARLSEVLRDGDIIARLGGDEFVVLVTDNDYKYFPMIVANR 242

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           L K+ E+          + I  S G+A         S ++  AD A+Y AKK GRN++  
Sbjct: 243 LLKVFEDE--FCLGDNDVLIGASIGVAFYNEAASNSSELMKCADIAMYRAKKMGRNQIQF 300

Query: 258 FSDI 261
           +S+ 
Sbjct: 301 YSEA 304


>gi|304410861|ref|ZP_07392478.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS183]
 gi|307304968|ref|ZP_07584718.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica BA175]
 gi|304350758|gb|EFM15159.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS183]
 gi|306912370|gb|EFN42794.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica BA175]
          Length = 577

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 11/184 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            S+   L  S+ ++ +L+  D L+ L+N   F       I+     ++ L+++  D+D F
Sbjct: 123 SSMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNRAIARAKRCHDYLAVILLDLDDF 182

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILAND 198
           K IND  GH  GD ++  ++ +L  V      + RLGG+EF      +  +    I+AN 
Sbjct: 183 KAINDTLGHQTGDVLLLKVAARLSEVLRDGDIIARLGGDEFVVLVTDNDYKYFPMIVANR 242

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           L K+ E+          + I  S G+A         S ++  AD A+Y AKK GRN++  
Sbjct: 243 LLKVFEDE--FCLGDNDVLIGASIGVAFYNEAASNSSELMKCADIAMYRAKKMGRNQIQF 300

Query: 258 FSDI 261
           +S+ 
Sbjct: 301 YSEA 304


>gi|300703321|ref|YP_003744923.1| signal transduction ggdef domain transmembrane protein [Ralstonia
           solanacearum CFBP2957]
 gi|299070984|emb|CBJ42293.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum CFBP2957]
          Length = 554

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 99/191 (51%), Gaps = 9/191 (4%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLG 123
           LV+ S+        ++  + + L  + + ++  +  D L+G+L    F++          
Sbjct: 362 LVVWSLLRERQHHRVTRHLNQRLQRTNSALANEAHFDHLTGVLTRRRFLALFETVLTRAH 421

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
              E L +V  D+D+FK+IND +GH VGD  +   +     V  +   +GRLGGEEFA  
Sbjct: 422 VRGESLVLVLADLDHFKRINDTWGHAVGDLALQRFASLATGVMRSSDLIGRLGGEEFAVV 481

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              ++ ++AA +   LR I+  +  ++ SG  + +T+S G+      +  S ++ RAD A
Sbjct: 482 MSSTTLEDAAGVVERLRAIVAEADDSLPSG--LTMTVSLGMTACRSGDTASEMLRRADLA 539

Query: 244 LYVAKKSGRNR 254
           LY AK+SGRNR
Sbjct: 540 LYRAKESGRNR 550


>gi|242240529|ref|YP_002988710.1| response regulator receiver modulated diguanylate cyclase [Dickeya
           dadantii Ech703]
 gi|242132586|gb|ACS86888.1| response regulator receiver modulated diguanylate cyclase [Dickeya
           dadantii Ech703]
          Length = 312

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 13/190 (6%)

Query: 83  GYISGSILKELFIS--YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVF 133
             +   ++ +L +    + +  ++ ID L+GL N   F   L             ++++ 
Sbjct: 122 AVVRARVMTQLTLKLYMDNMRDIAWIDGLTGLANRRRFDEMLPGYWQVCRRERRPIALLM 181

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEA 192
            D+D+FK+ ND++GH  GD  +  ++  +      P     R GGEEFA     +    A
Sbjct: 182 LDVDFFKRYNDSYGHQAGDDCLRQVATAIQQNIRRPMDMCFRYGGEEFACLLPFTDLAGA 241

Query: 193 AILANDLRKIIENSQINISSGP-SIHITISAGI-AERCHKEP-ISTIIYRADQALYVAKK 249
              A  +   +    I   +   S  IT+S G+  +  H+E   + ++  AD ALY  K 
Sbjct: 242 CQRAGAILDTVRQLAIPHRASEISDSITLSIGVDCQIPHREDGWNLLLRNADTALYQGKA 301

Query: 250 SGRNRVVCFS 259
            GR+R V F+
Sbjct: 302 LGRDRWVSFT 311


>gi|30023444|ref|NP_835075.1| GGDEF family protein [Bacillus cereus ATCC 14579]
 gi|229130662|ref|ZP_04259618.1| GGDEF domain protein [Bacillus cereus BDRD-Cer4]
 gi|29899005|gb|AAP12276.1| GGDEF family protein [Bacillus cereus ATCC 14579]
 gi|228653001|gb|EEL08883.1| GGDEF domain protein [Bacillus cereus BDRD-Cer4]
          Length = 352

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 103/226 (45%), Gaps = 16/226 (7%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96
           +++   I    I   YI L   + +       + L +IS  I+  + +IS + + +    
Sbjct: 132 VWLHAYILSILIPALYIWLIKEFHI-------VGLYLISSIITGYITFISANYVLQSNEL 184

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
           +  + Q + ID L+GL N   F   +  +       N+ L ++  DID+FK +ND +GHP
Sbjct: 185 FQTMKQYATIDALTGLGNVRQFDLEMNRHISNKHLKNDSLCLLLIDIDHFKHVNDTYGHP 244

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+  +   L  +   P  V R GGEEFA             +    R  +E     
Sbjct: 245 AGDEVLKQVGHILREMSAFPDLVFRKGGEEFALLIPRKGIAYGIHVGEQTRIAVEKHSFE 304

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  G  I IT+S G++E          I  AD ALY +K++GRN+V
Sbjct: 305 LLDGTKIKITVSVGVSEYEGAS--EQFIQAADDALYYSKRNGRNKV 348


>gi|78047033|ref|YP_363208.1| putative signal transduction protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035463|emb|CAJ23108.1| putative signal transduction protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 507

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 77/179 (43%), Gaps = 14/179 (7%)

Query: 95  ISYNRISQLSR---IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
            S NR+  L+     D L+G+ N                     LSI F D+D FK++ND
Sbjct: 316 ESENRMRHLAEQASRDALTGVFNRHQLGTALTHEFELASRQGWPLSIAFIDLDEFKRVND 375

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD+V+   +  L  +  T   V R GGEEF      +    A ++   +     
Sbjct: 376 AHGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEFLVILPNTPADAALMVIERILAETA 435

Query: 205 NSQINISSGPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +    G  +HIT SAG+A     E     I  ++  AD  LY +K  GRNRV  + 
Sbjct: 436 RTPMAQLKGGPLHITFSAGLATHGGAERQFDSIDHLLQAADSTLYRSKHRGRNRVTAYD 494


>gi|325475238|gb|EGC78423.1| GGDEF domain-containing protein [Treponema denticola F0402]
          Length = 371

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 12/179 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----------NEKLSIVFFDIDYF 139
           L  + I+ +++ +++  D ++ L     F + L  +           E LSI+  DID+F
Sbjct: 186 LAAIAINNSQLLEMTTTDIMTHLKLKHYFFTLLMEHLYTINSSGEKKETLSILMIDIDFF 245

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND +GH  GD V+  ++  +           R GGEEF      +S   A  +A  +
Sbjct: 246 KNINDTYGHAAGDIVLEEVAKIIKSCTRNADTAARYGGEEFVVMLNNTSASAAMAVAERI 305

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           RK +E   I +  G  I++TIS G++      E   +I+ RAD+ALY +K++GRNRV  
Sbjct: 306 RKSVEEKSI-MYDGKKINVTISIGVSSYNFDLESAKSIVERADKALYESKQNGRNRVTL 363


>gi|311695626|gb|ADP98499.1| diguanylate cyclase with PAS/PAC sensor [marine bacterium HP15]
          Length = 312

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL     ++ + S  D L+G+ N   F + +         +   LS++  DID FK  ND
Sbjct: 135 ELVALQKKLEEYSYKDGLTGVANRRMFDTVMNENWNHAIRHQSSLSVILLDIDNFKAYND 194

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GH  GD+ +  ++  L         FV R GGEEF      +    A  +A   R+++
Sbjct: 195 LNGHLQGDECLKRIATLLENAAQRPRDFVARFGGEEFVIVLPETDASAAISVAERCRQLL 254

Query: 204 ENSQINISSGP-SIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              QI     P S  +TIS GI        + I+  +   DQ LY AK+ GRNR+V 
Sbjct: 255 LEEQIPQGDSPNSKKVTISMGIGTVVPSRDDCIADFLDLVDQRLYKAKRDGRNRIVF 311


>gi|300314042|ref|YP_003778134.1| signal transduction protein containing a membrane domain, an EAL
           and a GGDEF domain-containing protein [Herbaspirillum
           seropedicae SmR1]
 gi|300076827|gb|ADJ66226.1| signal transduction protein containing a membrane domain, an EAL
           and a GGDEF domain protein [Herbaspirillum seropedicae
           SmR1]
          Length = 948

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 78/187 (41%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            +  +      +   +  D L+GL+N       L           + L +VF D+D FK 
Sbjct: 504 DITSMKRYEAELEFQASRDTLTGLINRHMLRHHLEQAIGVAERQKQALWVVFVDLDRFKF 563

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD ++  ++ +L         V RLGG+EF        E         L++
Sbjct: 564 VNDTLGHKAGDTLLRTVAGRLRAAVREADTVARLGGDEFIMILPEQDELTLDT--RSLQR 621

Query: 202 IIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I++     ++  G ++ +T S G+A          T+I  AD A+Y  K++GRN    ++
Sbjct: 622 IMDAVAAPVTLGGHTLFMTCSVGVACYPNDGTDGETLIKHADIAMYRGKQTGRNNFQFYT 681

Query: 260 DIENNTC 266
              N   
Sbjct: 682 PAMNEQA 688


>gi|241204721|ref|YP_002975817.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858611|gb|ACS56278.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 391

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 111/234 (47%), Gaps = 15/234 (6%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS 88
           +  SI+ +  ++ ++ +  IF     L P Y    +++ + ++ +  + +          
Sbjct: 155 LSASIWVATSLSALVVVGFIFPDDAPLPPRYAFFLLIICHFAVALFVLVLV--------- 205

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-GSYNEKLSIVFFDIDYFKQINDNFG 147
                  +  ++ +L+  D L+G+ N   F +SL  S     + +  DID+FK++ND  G
Sbjct: 206 ----QERAEEKLIRLANTDMLTGIPNRQHFFNSLPKSLGSGDAFILIDIDFFKRVNDMHG 261

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  ++  + +        GRLGGEEF+    G +   A  LA  +R+ +    
Sbjct: 262 HDKGDVVLINVARTIALSVPPSCVFGRLGGEEFSLFFRGQTAASAFALAERIREAVNAVS 321

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           + +  G  +  ++SAG+A          I  RADQALY+AK  GRNRV  FS +
Sbjct: 322 L-VLEGNQVTPSVSAGVALWEAGLTEQDIQKRADQALYIAKNKGRNRVELFSSV 374


>gi|107099271|ref|ZP_01363189.1| hypothetical protein PaerPA_01000283 [Pseudomonas aeruginosa PACS2]
 gi|296386781|ref|ZP_06876280.1| putative sensory box/GGDEF domain protein [Pseudomonas aeruginosa
           PAb1]
 gi|313112100|ref|ZP_07797883.1| putative sensory box/GGDEF domain-containing protein [Pseudomonas
           aeruginosa 39016]
 gi|310884385|gb|EFQ42979.1| putative sensory box/GGDEF domain-containing protein [Pseudomonas
           aeruginosa 39016]
          Length = 323

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
              + +     + + +L+  D L+   N   F  S              L+ +  D+D F
Sbjct: 145 AEDITDKKHMESELQRLATTDVLTQSSNRRYFFDSAEAAFKECRREGIPLAFLLLDVDDF 204

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND FGH VGD+V+  ++             GR+GGEEFA    G  EQ A  +   L
Sbjct: 205 KKINDRFGHQVGDQVLQRIAQSGSAALRRGDLFGRIGGEEFAVLLPGCDEQTARQIGERL 264

Query: 200 RKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++ ++  +       S  IT+S G+   +   E +  +  RAD A+Y AK+ G++ +V 
Sbjct: 265 QREVQRLRFQ-EGEQSFGITVSQGLTVLQADDEGLGALYSRADAAMYSAKRQGKDCIVV 322


>gi|296158392|ref|ZP_06841223.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia sp. Ch1-1]
 gi|295891336|gb|EFG71123.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia sp. Ch1-1]
          Length = 769

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 15/194 (7%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----------YNEKLSIV 132
            IS + +  +  +  ++  L+  D L+GL N +     L                 ++++
Sbjct: 313 LISFTDIGPVREAQRQLKFLATRDSLTGLYNRAYLTERLRDLFSLDTSSGMGELASVAVL 372

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F D+D FK++ND  GH  GD ++  ++++L     T   + R+GG+EF            
Sbjct: 373 FVDLDGFKKVNDTAGHEAGDSLLCSVAERLAACISTEDTLARVGGDEFVIVVSAYENTGH 432

Query: 193 AI-LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
            I LA  +  +I        +    ++  S GI+      + ++T++  AD A+Y AK+ 
Sbjct: 433 LIGLAQRILDMIAV--PFAVADNEYYLGASIGISRFPEDGQDVATLLRNADSAMYHAKQR 490

Query: 251 GRNRVVCFSDIENN 264
           GRN    F+   N 
Sbjct: 491 GRNNFQFFTAELNR 504


>gi|228946170|ref|ZP_04108504.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228813516|gb|EEM59803.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 785

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 96/200 (48%), Gaps = 10/200 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           +++V I I       Y+    + ++    ++I+ L+  D ++ + N   F   L    E+
Sbjct: 323 VTIVPIMIEGQTFGSYVMVKDITKMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIER 382

Query: 129 -------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                    +++ D++ FK IND  GH +GD V+  ++ +        + + R+GG+EFA
Sbjct: 383 AQKTQGEFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSIPLARIGGDEFA 442

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRA 240
                 +EQ+   L  +L +I E  +  + +  S ++++S GIA         +T++  A
Sbjct: 443 VLVHNHTEQQLLDLCENLFRITE--KPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHA 500

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D A+Y AK+ G N V  + +
Sbjct: 501 DIAMYSAKEKGNNAVCMYDE 520


>gi|225629101|ref|ZP_03787134.1| GGDEF domain protein [Brucella ceti str. Cudo]
 gi|260167407|ref|ZP_05754218.1| response regulator PleD [Brucella sp. F5/99]
 gi|261756817|ref|ZP_06000526.1| GGDEF:Response regulator receiver [Brucella sp. F5/99]
 gi|225615597|gb|EEH12646.1| GGDEF domain protein [Brucella ceti str. Cudo]
 gi|261736801|gb|EEY24797.1| GGDEF:Response regulator receiver [Brucella sp. F5/99]
          Length = 462

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 81/174 (46%), Gaps = 9/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L  S  R    S  D L+GL N           ++      + LSI+  D+D+FKQ+N+ 
Sbjct: 286 LRQSMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQ 345

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD V+   S +L         + R GGEEF      +  Q A  +A  +R I+  
Sbjct: 346 YGHGAGDHVLREFSGRLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRGIVAE 405

Query: 206 SQINISSGP-SIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +  G     +T+S G+ A R   + +  +  RA  AL  AK+SGRNR+V 
Sbjct: 406 APFVLDDGKRRASLTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIVL 459


>gi|149909555|ref|ZP_01898209.1| methyl-accepting chemotaxis protein-like protein [Moritella sp.
           PE36]
 gi|149807460|gb|EDM67411.1| methyl-accepting chemotaxis protein-like protein [Moritella sp.
           PE36]
          Length = 386

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/259 (24%), Positives = 112/259 (43%), Gaps = 34/259 (13%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIA----NIFLFYIGLTPFYGLEYILV 66
           +W  ++ +LE +S   ++ YFS +    I T I++     N+F   +  +      ++L 
Sbjct: 150 LWSKND-SLEQYSKIAYVSYFSPW-DWLIGTGIYLDDMEQNVFWTVVKASGILLFGFVLF 207

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
              ++VI++  +                   N++S+ S  D L+ L         +    
Sbjct: 208 IGTAIVIVNFVV-------------------NQLSEQSVRDTLTKLYTKRFLEEVIPGML 248

Query: 123 ---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                 N  L+ VF DID+FK +ND++GH  GDKV+  ++  ++    +  +  R GG+E
Sbjct: 249 ENEKRNNRTLAAVFMDIDHFKDVNDSYGHDCGDKVLQKIAQVMLENTRSGDYCIRYGGDE 308

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIY 238
           F        ++    +   +R+       +        +T+SAGIA    H +     + 
Sbjct: 309 FVIIGPCDDDKNVIAVVERIREEAAALVFSHHD-IDFKVTLSAGIALYENHHDSFDETLI 367

Query: 239 RADQALYVAKKSGRNRVVC 257
           +AD  LY AKK GRN VV 
Sbjct: 368 QADMKLYQAKKMGRNCVVA 386


>gi|92112821|ref|YP_572749.1| diguanylate cyclase [Chromohalobacter salexigens DSM 3043]
 gi|91795911|gb|ABE58050.1| diguanylate cyclase [Chromohalobacter salexigens DSM 3043]
          Length = 413

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 117/269 (43%), Gaps = 22/269 (8%)

Query: 9   LSIWLCHEKNL-ESFSPHTFMIYFSIFF----SIFIATVIFIANIFLFYIGLTPFYGLEY 63
           + + +C    L  +     F +  ++      ++  A  I ++ + +  +G+        
Sbjct: 114 MVVLICEAIRLYGAGVGFEFYVGLALLVLHISALPRACKIVLSCLLIGVVGILLISVHRD 173

Query: 64  ILVENLS------LVIISITISLLLGYISGSILKELFISYNRISQ----LSRIDCLSGLL 113
           +   +LS      L+ I++    ++G + G +L  L     R+ +     +  D L+G L
Sbjct: 174 MPPASLSPAMATGLLWINLA---MMGMLFGGVLMGLEGVTERLERTYRREALHDMLTGAL 230

Query: 114 NHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           N  A +S    +       ++V  D+D+FK+ ND  GH  GD  +  L + L        
Sbjct: 231 NRRAILSIAERWRRAQCPFALVLLDVDHFKRFNDLHGHATGDAALCHLVNCLQQGLREGD 290

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            +GR GGEEF     G +   A  +A  +  ++    + +    S+ +T+S GIA     
Sbjct: 291 MLGRYGGEEFMLLLPGMTRGAAMTVAERIAALVREQPLALPD-KSLGMTVSQGIAAEDEA 349

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +  +I  AD+ LY AK +GR+RV+ + 
Sbjct: 350 ATLGEMIELADRRLYAAKHAGRDRVMAWD 378


>gi|87199442|ref|YP_496699.1| diguanylate cyclase/phosphodiesterase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135123|gb|ABD25865.1| diguanylate cyclase/phosphodiesterase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 724

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 81/189 (42%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
              + + +      S+ +  D L+GL N       L          N    ++  D+D F
Sbjct: 154 ARDVTQEYTRKREDSRAAEFDSLTGLYNRHRMTRRLDAILAAFRQANRCCGLMMLDLDKF 213

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILAND 198
           K +ND  GHP GD+++  ++++L  V G    +GRLGG+EF        ++     LA  
Sbjct: 214 KHVNDTMGHPAGDELLRQVAERLRKVVGERGEIGRLGGDEFQIILPDIDDRGRLGELAAK 273

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           + +I+  SQ     G    I  S GIA   H  E    ++  AD ALY AK  GR +   
Sbjct: 274 VIQIV--SQPYAIEGKRAVIGTSVGIAVAPHDGEDREGLVSSADLALYAAKHGGRGQFRF 331

Query: 258 FSDIENNTC 266
           FS    +  
Sbjct: 332 FSTELKDEA 340


>gi|26990037|ref|NP_745462.1| sensory box protein [Pseudomonas putida KT2440]
 gi|24984961|gb|AAN68926.1|AE016524_1 sensory box protein/GGDEF domain protein [Pseudomonas putida
           KT2440]
          Length = 733

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 12/212 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           L+ +++ + I +   ++  +     + +      ++S  +  D L+GLLN  +    L  
Sbjct: 270 LIMDIANLPIMVNGEIVGVFGIARDISKQKHYERQLSINASHDGLTGLLNRLSLEDRLVQ 329

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                     +L++++ D+D FK IND+ GH  GD+V+  ++ +L         V R+GG
Sbjct: 330 ACRSSRQRKVQLAVMYIDLDGFKSINDSIGHYFGDQVLIEVAQRLTQQVRPADTVVRMGG 389

Query: 178 EEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPIST 235
           +EF         +++A  +A  L   I   +     G  +H++ S GI     H E    
Sbjct: 390 DEFVVLLTDLLRDEDAVPVAERLLASI--GKPYCIQGIDLHVSTSIGITVSDGHIEQPMK 447

Query: 236 IIYRADQALYVAKKSGRNRVVCF-SDIENNTC 266
           +I +AD A+Y AK+ GRN    + SD+ +  C
Sbjct: 448 LIQQADMAMYKAKQQGRNNFQWYTSDLNHRVC 479


>gi|114567140|ref|YP_754294.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338075|gb|ABI68923.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 641

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 11/180 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL  +   +  LS  D L+ L N   F   +           + +S++  DID FK  ND
Sbjct: 462 ELEKTNQALQLLSLKDPLTNLWNRRKFDEIIENEWNRCFRNRKSISVMILDIDLFKGYND 521

Query: 145 NFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD+ +  ++  +   F      V R GGEEF        + EA  +A  L + I
Sbjct: 522 RYGHLAGDECLIQVAKAIANSFKRASDLVARYGGEEFVVIMPECKKDEAIKMALLLCEKI 581

Query: 204 ENSQINISSGP-SIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           E  +I       S ++T+S G+           + +I  AD+ALY AK +GRN++   ++
Sbjct: 582 EGLKIPYGDSSLSKYVTVSIGVTSKIPDSNSSPTDLILLADKALYQAKNAGRNQIKFLAE 641


>gi|311108804|ref|YP_003981657.1| diguanylate cyclase [Achromobacter xylosoxidans A8]
 gi|310763493|gb|ADP18942.1| diguanylate cyclase, GGDEF domain protein 17 [Achromobacter
           xylosoxidans A8]
          Length = 413

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/181 (30%), Positives = 80/181 (44%), Gaps = 24/181 (13%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
            ++  D L+GL    A    L       ++   D+D FK  ND  GH VGD+V+  ++ Q
Sbjct: 226 HMAFRDELTGLPGRRALNERLQRMGRVYTLAMADVDNFKAFNDTHGHDVGDQVLRMVAAQ 285

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS------ 215
           L  V G      R GGEEF     G +  E+      +R+ IE  Q+ +   P+      
Sbjct: 286 LRRVPGGG-QAYRYGGEEFTLVFPGKTAAESMPHLESVRRSIEAYQMRLRDKPARPKADQ 344

Query: 216 ----------------IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
                           + +T+S G+AER        ++I  ADQALY AK  GRN+V  +
Sbjct: 345 IGLRRRSGRDARSARPLRVTVSIGVAERSEALRAPESVIKAADQALYKAKDEGRNQVRAY 404

Query: 259 S 259
           S
Sbjct: 405 S 405


>gi|291085296|ref|ZP_06352670.2| developmental regulator MorA [Citrobacter youngae ATCC 29220]
 gi|291071533|gb|EFE09642.1| developmental regulator MorA [Citrobacter youngae ATCC 29220]
          Length = 681

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 92/189 (48%), Gaps = 16/189 (8%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +G+  E     ++ IV+ D+D FK
Sbjct: 237 SGTDITEERRAQERLRVLANTDSITGLPNRNAIHELIGNAIENAGDTQVGIVYLDLDNFK 296

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S    E  A+ + 
Sbjct: 297 KVNDAYGHMFGDQLLQSVSLAILSCLDDNQLLARFGGDEFIVLATETSQSALEATASRIL 356

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             LR+      I + +G       S GI+    H +   ++I  AD A+Y AK+ GR + 
Sbjct: 357 TRLRQPFRIGLIEVYTG------CSIGISLAPQHGQDCESVIRNADTAMYTAKEGGRGQF 410

Query: 256 VCFSDIENN 264
             FS   N 
Sbjct: 411 CVFSPEMNQ 419


>gi|283852211|ref|ZP_06369484.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio sp. FW1012B]
 gi|283572437|gb|EFC20424.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio sp. FW1012B]
          Length = 305

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/196 (28%), Positives = 85/196 (43%), Gaps = 13/196 (6%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---- 127
           +I  +T+ ++   +   +  EL    + +  LS  D L+G+ N   F   L         
Sbjct: 107 IIKPVTVPIVQARVRTHV--ELKRRGDLLETLSLRDGLTGIPNRRRFDDCLDRAWRQALR 164

Query: 128 ---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAA 183
               LS+V  DID FK  ND +GH  GD  +  ++  L  V         R GGEEFA  
Sbjct: 165 NDTPLSLVMADIDDFKAYNDTYGHLAGDDCLRAVARTLACVLKRPGDLAARFGGEEFAIV 224

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGI--AERCHKEPISTIIYRA 240
              +    A  LA  +R  +    +      +   +TIS G+  A     +    ++ +A
Sbjct: 225 LEETGLGGALHLAEAMRGAVAALGLPHPGSRAAGVVTISLGVACAVPSPDQGPRALLCQA 284

Query: 241 DQALYVAKKSGRNRVV 256
           D+ LY AK +GRNRVV
Sbjct: 285 DRQLYEAKLAGRNRVV 300


>gi|15595367|ref|NP_248859.1| hypothetical protein PA0169 [Pseudomonas aeruginosa PAO1]
 gi|116053890|ref|YP_788327.1| GGDEF domain-containing protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218888914|ref|YP_002437778.1| putative GGDEF domain [Pseudomonas aeruginosa LESB58]
 gi|254237593|ref|ZP_04930916.1| hypothetical protein PACG_03674 [Pseudomonas aeruginosa C3719]
 gi|254243277|ref|ZP_04936599.1| hypothetical protein PA2G_04085 [Pseudomonas aeruginosa 2192]
 gi|9946001|gb|AAG03559.1|AE004454_11 hypothetical protein PA0169 [Pseudomonas aeruginosa PAO1]
 gi|115589111|gb|ABJ15126.1| putative GGDEF domain [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126169524|gb|EAZ55035.1| hypothetical protein PACG_03674 [Pseudomonas aeruginosa C3719]
 gi|126196655|gb|EAZ60718.1| hypothetical protein PA2G_04085 [Pseudomonas aeruginosa 2192]
 gi|218769137|emb|CAW24897.1| putative GGDEF domain [Pseudomonas aeruginosa LESB58]
          Length = 235

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 11/178 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
             ++++L ++   + + S  D L+GL N    +  L         + +   +   D+D+F
Sbjct: 46  QQMMRDLNLA---LKEASIRDPLTGLPNRRMLLERLREENERSQRHGQSYVLAMLDVDFF 102

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQ+ND +GH  GD+V+  ++  +          GR GGEEF      +  Q+A  +   +
Sbjct: 103 KQVNDTWGHDSGDRVLVEIARAMESELREYDLCGRWGGEEFLLLLPQTRLQDAGPVLERV 162

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R  +    + + +  ++ +T S G+ E    E  S  + RAD AL  AK+SGR++ V 
Sbjct: 163 RDSVRTLAVRVGT-EALSVTASVGVTEHRIGETYSQTVNRADAALLDAKRSGRDKCVF 219


>gi|326941229|gb|AEA17125.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 909

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 96/205 (46%), Gaps = 10/205 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           IL   +++V I I       Y+    +  +    + I+ L+  D ++ + N   F   L 
Sbjct: 442 ILFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELD 501

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     +K  +++ D++ FK IND  GH +GD+V+  ++ +        + + R+G
Sbjct: 502 RSIKRAQKTQDKFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPTIPLARIG 561

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           G+EFA      +EQ+   L   L +I E  +  + +  S ++++S GIA         +T
Sbjct: 562 GDEFAIIVHNQTEQQLLDLCKTLFRITE--EPFVVNQHSFYLSLSIGIAVYPFGGINTTT 619

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++  AD A+Y AK+ G N V  + +
Sbjct: 620 LLQHADIAMYSAKEKGNNAVCMYDE 644


>gi|313682576|ref|YP_004060314.1| diguanylate cyclase/phosphodiesterase [Sulfuricurvum kujiense DSM
           16994]
 gi|313155436|gb|ADR34114.1| diguanylate cyclase/phosphodiesterase [Sulfuricurvum kujiense DSM
           16994]
          Length = 652

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 101/215 (46%), Gaps = 17/215 (7%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILK------ELFISYNRISQLSRIDCLSGLL 113
           G++ +++  + ++  ++ I+ ++       ++      ++      ++  S  D L+GL 
Sbjct: 165 GMDIVILHGVFVIAEAMVIAYIVKLQMEHAIELNRTENQVLGLNEELTFASLHDSLTGLP 224

Query: 114 NHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N  +  + +         Y+ K +++F D+D+FK IND  GH VGD+++  ++ +L  + 
Sbjct: 225 NRHSLYTQMKLMVANANRYDRKFAVLFLDLDHFKNINDTLGHHVGDELLKAVAQKLNSIV 284

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIA 225
                V R+GG+EF      S    A  +   + KI++   Q        + ++ S G++
Sbjct: 285 RENDIVARIGGDEFIMIL--SDFNNAVTIEPVISKILDMFHQEWRIQSHFLRLSTSIGVS 342

Query: 226 ERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
                   I+ ++  AD A+Y AK  GR++   F+
Sbjct: 343 VYPDDSKDINELMKYADIAMYKAKSEGRDQFSFFT 377


>gi|172039201|ref|YP_001805702.1| putative two-component response regulator [Cyanothece sp. ATCC
           51142]
 gi|171700655|gb|ACB53636.1| putative two-component response regulator [Cyanothece sp. ATCC
           51142]
          Length = 608

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 12/182 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQI 142
           ++L  + NR+ +++  D L+GL N +  I  L           N + +++F D D FK I
Sbjct: 166 QQLQEANNRLQEMALYDSLTGLANRNLLIEQLKQSLTLTKLDKNYQFAVLFLDCDRFKII 225

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRK 201
           ND+ GH VG+ ++  +S  L  +      + R+GG+EFA      S   +   LA  +  
Sbjct: 226 NDSLGHLVGNLLLGKISQALQTILEKNDILARVGGDEFAILLSDISGCTQGTELAKSILN 285

Query: 202 IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +++  Q    +G  I + +S GI       E    I+  AD A+Y AK  GR +   F+ 
Sbjct: 286 LLK--QPFYCNGQEIFVNVSIGIVFSHPDYEDPENIVRDADMAMYKAKSLGRGQYQIFTP 343

Query: 261 IE 262
             
Sbjct: 344 EM 345


>gi|113970578|ref|YP_734371.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113885262|gb|ABI39314.1| diguanylate cyclase [Shewanella sp. MR-4]
          Length = 726

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +L  +  ++  ++  D L+ L N     +             + +++V  D+DYFK++ND
Sbjct: 545 DLEAANRKLKDMAERDSLTNLYNRRYTENQFLKIQDLCERGQDAIAVVLLDLDYFKKVND 604

Query: 145 NFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD+ +  +++ L   F      + R GGEEF       +  +     ND R+ +
Sbjct: 605 TYGHLAGDECLRVMAEVLSRHFKRDVDLLCRYGGEEFILILPMCNSLKVEQHLNDFREKL 664

Query: 204 ENSQI-NISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +  I N +   +  +T+S G  IA+  +   +   + +AD+ LY AK+ GRNRVVC
Sbjct: 665 ASVIITNPADQVTFSVTVSIGAIIADATYSTTLDVWLKQADENLYKAKEQGRNRVVC 721


>gi|238798055|ref|ZP_04641543.1| Diguanylate cyclase with PAS/PAC sensor [Yersinia mollaretii ATCC
           43969]
 gi|238718035|gb|EEQ09863.1| Diguanylate cyclase with PAS/PAC sensor [Yersinia mollaretii ATCC
           43969]
          Length = 693

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 73/182 (40%), Gaps = 8/182 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDI 136
             +    +         +   +  D L+GL+N       L         NE+  + + D+
Sbjct: 511 AVVVFQDVTRARHEQRELQYQANHDMLTGLINRRRLEERLTHAISQLGENEQHILCYVDL 570

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK++ND  GH  GD V+  ++  +         V RLGG+EFA          A  + 
Sbjct: 571 DYFKEVNDTAGHEAGDMVLRMVAQTMQQAVRENDIVARLGGDEFAIVLFNCKNAPATEIL 630

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             +   I   Q +   G S   T S G      + E  +  + +AD A Y AK +GRNR+
Sbjct: 631 EQVVADIAAIQFHWH-GQSYAFTASLGAVPFNRQIETAAQAMRQADIACYAAKHAGRNRL 689

Query: 256 VC 257
             
Sbjct: 690 SF 691


>gi|226357522|ref|YP_002787262.1| metal dependent phosphohydrolase [Deinococcus deserti VCD115]
 gi|226319513|gb|ACO47508.1| putative metal dependent phosphohydrolase [Deinococcus deserti
            VCD115]
          Length = 1251

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 8/178 (4%)

Query: 87   GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139
             ++L  L      + +  R D L+G+ N                +  + L+I+  DID+F
Sbjct: 1075 SALLAALQEQSRVLERQLREDALTGVYNRRFIEENVTIEYERHRNSGQPLAILMVDIDHF 1134

Query: 140  KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
            KQIND F HPVGD+V+  ++            +GR GGEEF      S+ ++AA +A  +
Sbjct: 1135 KQINDRFSHPVGDEVLRRVARIFRETCRANDLIGRYGGEEFLFLLPNSNVRQAAEVAERI 1194

Query: 200  RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            R  IE    +      + +T+S GI    +      +I  AD  LY AK  GRNRVV 
Sbjct: 1195 RSNIEKYAWH-EIHEDLRVTLSLGICADTNVVNHEKMISIADAKLYEAKTGGRNRVVA 1251


>gi|301052276|ref|YP_003790487.1| sensory box/GGDEF family protein [Bacillus anthracis CI]
 gi|300374445|gb|ADK03349.1| sensory box, GGDEF family protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 569

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 89/175 (50%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQA-- 252

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 253 PFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 307


>gi|262191053|ref|ZP_06049261.1| amino acid ABC transporter amino acid-binding protein [Vibrio
           cholerae CT 5369-93]
 gi|262033074|gb|EEY51604.1| amino acid ABC transporter amino acid-binding protein [Vibrio
           cholerae CT 5369-93]
          Length = 461

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 57/214 (26%), Positives = 107/214 (50%), Gaps = 4/214 (1%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            I   ++ +   Y    + +    L++  +  +L L        ++L  +  ++S L++ 
Sbjct: 245 RILSRWVHIETIYPRYLMPILASGLLLSIVIYTLQLRRTVRLRTQQLEEANQKLSYLAKT 304

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ + N  +F   L +   +   L+++ FDID FK IND+FGH  GD  I F+   + 
Sbjct: 305 DSLTDIANRRSFFEYLEAEQARSGSLTLMVFDIDDFKTINDHFGHGAGDNAICFVVGCVR 364

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
               +  +  R+GGEEFA  A G + +E+  LA  + + +   +  +++  S+ +TIS G
Sbjct: 365 QALESDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKKWVVNAQHSLSLTISLG 424

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            A   H     ++ + AD  +Y  K++G+N+VV 
Sbjct: 425 CAFYLHPARPFSL-HDADSLMYEGKRNGKNQVVF 457


>gi|262192132|ref|ZP_06050293.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
 gi|262031981|gb|EEY50558.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
          Length = 473

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 14/215 (6%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           F +YI +       + +    +L  ++I+  + LG +  + +        R+  ++  D 
Sbjct: 264 FQWYIIVEQKDEFNHDIWFKATLGNLAISAFVALGVLGLAQMS-FRGYQKRLEDMAVRDK 322

Query: 109 LSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+G  N   F              +  LS+   D+D+FKQ+NDN+GHP GD V+  +   
Sbjct: 323 LTGAYNRQVFEELVDDAISLANKESNPLSLAVIDLDHFKQVNDNYGHPAGDLVLQRVVAL 382

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                     + R GGEEF       ++QEA      +R  I              +T+S
Sbjct: 383 CQRHIAQVGTLCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMHA------SQPQVTVS 436

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ +    E +  +  RADQA+Y AK  GRN+VV
Sbjct: 437 IGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 471


>gi|205372224|ref|ZP_03225039.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus coahuilensis m4-4]
          Length = 676

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 8/173 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
             +  +I  ++  D L+GL N   F       +     K++I+  D++ FK +ND  GH 
Sbjct: 238 KEAEKKIHHMAYHDDLTGLPNRRYFEQITAEIIKRQPMKMAILLLDLNRFKVVNDTLGHA 297

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQI 208
            GD+++  ++ ++    G    V R+ G+EF         + +   +AN + K +E  Q 
Sbjct: 298 AGDQLLIEIARRIDDKIGVQDHVARMSGDEFILLLPTIRGKADVFHIANHIHKSLE--QP 355

Query: 209 NISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            + +   I  + S G+A    H E ++T++  AD A+Y AKK G  +   +S+
Sbjct: 356 ILINDHEIITSTSIGVAMYPDHGEDLTTLLKTADVAMYTAKKKGAAQTFFYSN 408


>gi|205351698|ref|YP_002225499.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205271479|emb|CAR36296.1| adrA protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326626730|gb|EGE33073.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 370

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 104/232 (44%), Gaps = 12/232 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            F++ +  ++    + L   GL P       L   LSL +I +   LL  ++S     +L
Sbjct: 141 LFTVGMGLLLASCLVTLQLTGL-PVAMRSSSLEVTLSLPVIML-YPLLFAWVSYQTAIKL 198

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
                R+  +S  D ++G+ N   +             ++ + +++  DID+FK IND +
Sbjct: 199 AEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFDHSRHHHREATLLIIDIDHFKSINDTW 258

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ I  L+ QL +       +GR GG+EFA    G+    A    + + + +   
Sbjct: 259 GHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEFAVIMCGTPADSAITAMSRVHERLNTL 318

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++     P + + IS G+A    +       +  AD ALY AK +GRNR   
Sbjct: 319 RLP--GAPQVMLRISVGVAPLTPQIGHYREWLKSADMALYKAKNAGRNRTEV 368


>gi|317049551|ref|YP_004117199.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Pantoea sp.
           At-9b]
 gi|316951168|gb|ADU70643.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Pantoea sp.
           At-9b]
          Length = 696

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/273 (21%), Positives = 113/273 (41%), Gaps = 21/273 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANI--------FLFYIGLTPFYGL 61
           ++WL       +       +  S+     IA + +               ++G+   +  
Sbjct: 156 ALWLAFTLREGTGRVTLLRLGASVVMGCAIAGMHYTGMAAANFPMQSHATHMGVNSNWLA 215

Query: 62  EYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
             + V  L+++ I++ +S+L   +      + + L  +   ++QL+  D L+ L N    
Sbjct: 216 MLVTVVTLAILGITLLVSMLDARMQARTSILARSLAEANRELAQLALHDNLTRLPNRILL 275

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L              +++F D+D FK +ND FGH VGD ++  +++++         
Sbjct: 276 EDRLDQAINKADREQSHFALMFMDLDGFKAVNDAFGHHVGDNLLIAVTERMTGQMKGHYT 335

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
           + R+GG+EF          +AA  A+ L K IE  +    S   + +++S GIA      
Sbjct: 336 LARMGGDEFVLLIEIDDPNDAAAAADALVKAIE--KPFSISRYELVVSLSIGIAVYPGDG 393

Query: 232 -PISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                +++ AD A+Y  K +GRN    F    N
Sbjct: 394 VDERELMFNADAAMYHTKNNGRNGYNFFQPSMN 426


>gi|238024841|ref|YP_002909073.1| diguanylate cyclase/phosphodiesterase [Burkholderia glumae BGR1]
 gi|237879506|gb|ACR31838.1| Diguanylate cyclase/phosphodiesterase [Burkholderia glumae BGR1]
          Length = 693

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 60/215 (27%), Positives = 96/215 (44%), Gaps = 15/215 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFIS----YNRISQLSRIDCLSGLLNHSAF-- 118
           L   +SL    I I+ LL     +    L  +       I +L+ +D L+GL N S    
Sbjct: 216 LATTVSLFTFVILIATLLLSRIDARNSRLASTVTNLNGEIVRLATLDTLTGLPNRSTLTH 275

Query: 119 -----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                I +    +   +++F D+D FK IND+ GH +GD+V+   S +L     +   V 
Sbjct: 276 RIAEAIDTARRRHSGFAVLFMDLDGFKAINDSLGHSIGDRVLVTFSQRLRGCVRSFDTVA 335

Query: 174 RLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           RLGG+EF   A    S  EA ++A  + +   +   ++     + +T S GIA      E
Sbjct: 336 RLGGDEFVVLAERIGSASEARVIAETVLERTRDGAWSLDE--PLQVTPSIGIALYPRDGE 393

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            +  ++  AD A+Y AK+ GR     F    N+  
Sbjct: 394 TVDALLKHADAAMYEAKRGGRGAYRFFEVGMNDAA 428


>gi|212636771|ref|YP_002313296.1| response regulator receiver domain-containing protein [Shewanella
           piezotolerans WP3]
 gi|212558255|gb|ACJ30709.1| Response regulator receiver domain protein (CheY-like) [Shewanella
           piezotolerans WP3]
          Length = 479

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 20/221 (9%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSIL---KELFISYNRISQLSRIDCLSGLL 113
           P+    + ++ +L L I    I      ++  +L   ++L ++  ++  LS  D L+ + 
Sbjct: 257 PYLIALFGILGSLVLAIYVFFIMRHSHMVNMQVLERTRDLNLAKKKLEALSMTDSLTRIG 316

Query: 114 NHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV- 165
           N   F ++     +       +L+++  DID FK  ND +GH  GD+ +  ++  +    
Sbjct: 317 NRRFFDNAFEREWQLAIRNKTRLALLMIDIDNFKSYNDTYGHLAGDECLVEVAQAIAEAL 376

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGI 224
                 V R GGEEF      +  ++    A    + +    I  S+  +  ++T+S G+
Sbjct: 377 HRPSDVVARYGGEEFVVILPHT--RDCLSPAQRCCENVAALNIAHSNSTTRPYVTVSVGV 434

Query: 225 AERCHKEPISTIIYR---ADQALYVAKKSGRNRVVCFSDIE 262
                 E    ++     AD ALY AK++GRN+V  F D E
Sbjct: 435 TSIIPTES-DDMVKFAAIADMALYKAKENGRNQV--FVDAE 472


>gi|165869120|ref|ZP_02213780.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488]
 gi|167637730|ref|ZP_02396009.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193]
 gi|170704854|ref|ZP_02895320.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389]
 gi|177649293|ref|ZP_02932295.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174]
 gi|190565633|ref|ZP_03018553.1| sensory box/GGDEF family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227814656|ref|YP_002814665.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684]
 gi|229604312|ref|YP_002866848.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248]
 gi|254722510|ref|ZP_05184298.1| sensory box/GGDEF family protein [Bacillus anthracis str. A1055]
 gi|254737552|ref|ZP_05195255.1| sensory box/GGDEF family protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|254751867|ref|ZP_05203904.1| sensory box/GGDEF family protein [Bacillus anthracis str. Vollum]
 gi|254760387|ref|ZP_05212411.1| sensory box/GGDEF family protein [Bacillus anthracis str. Australia
           94]
 gi|164715846|gb|EDR21363.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488]
 gi|167514279|gb|EDR89646.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193]
 gi|170130655|gb|EDS99516.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389]
 gi|172084367|gb|EDT69425.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174]
 gi|190563660|gb|EDV17625.1| sensory box/GGDEF family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227003077|gb|ACP12820.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684]
 gi|229268720|gb|ACQ50357.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248]
          Length = 828

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 96/200 (48%), Gaps = 10/200 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           +++V I I       Y+    + ++    ++I+ L+  D ++ + N   F   L    E+
Sbjct: 366 VTIVPIMIEGQTFGSYVMVKDITKMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIER 425

Query: 129 -------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                    +++ D++ FK IND  GH +GD V+  ++ +        + + R+GG+EFA
Sbjct: 426 AQKTQGEFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSIPLARIGGDEFA 485

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRA 240
                 +EQ+   L  +L +I E  +  + +  S ++++S GIA         +T++  A
Sbjct: 486 VLVHNHTEQQLLDLCENLFRITE--KPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHA 543

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D A+Y AK+ G N V  + +
Sbjct: 544 DIAMYSAKEKGNNAVCMYDE 563


>gi|119898940|ref|YP_934153.1| GGDEF family protein [Azoarcus sp. BH72]
 gi|119671353|emb|CAL95266.1| GGDEF family protein [Azoarcus sp. BH72]
          Length = 569

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 82/187 (43%), Gaps = 14/187 (7%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           L L         EL      + QL+R D L+GL N  A    L              +++
Sbjct: 374 LALEQKVAERTAELQRLNAELVQLARRDALTGLPNRLAANEQLTEEFLRMKRSLVPYAVL 433

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID FK+IND  GH VGD V+  ++  +        FV R+GGEEF      +  + A
Sbjct: 434 MADIDLFKRINDGHGHAVGDAVLRHVAGVIRSSLRITDFVARVGGEEFLVLLPNTDIEAA 493

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKS 250
           A++A  +R  +E +           +T+S G+  A   H  P    +  AD  LY AK+ 
Sbjct: 494 AVVAEKIRVAVEGAAAPEVG----QVTLSIGVGRAVSAHPSP-DDAVRLADDGLYEAKRL 548

Query: 251 GRNRVVC 257
           GRNR+  
Sbjct: 549 GRNRISV 555


>gi|83647197|ref|YP_435632.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83635240|gb|ABC31207.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 636

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 12/191 (6%)

Query: 81  LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIV 132
           +LG + S S + EL +S  +    S  D L+GL N + F   L    E+       L+++
Sbjct: 182 VLGRVWSLSDITELKLSEQQALFHSYHDNLTGLPNRTLFHERLTHAIERRGVQQRDLAVM 241

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQE 191
           F D+D FK IND+ G   GD+++   + ++         V R GG+EF        +  E
Sbjct: 242 FLDLDGFKDINDSTGLETGDQLLQMAAQRIKETLPPETTVARYGGDEFIVLLENIKTSFE 301

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
           A +++  LR  I+  +       + H+T S GIA           +I +AD A+  AK  
Sbjct: 302 ATLVSERLRSAID--RPFTVDDQTFHLTCSIGIALYPTDSRDADALIRKADMAMNHAKSR 359

Query: 251 GRNRVVCFSDI 261
           GRN    F+D 
Sbjct: 360 GRNNCQFFADE 370


>gi|315123413|ref|YP_004065419.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Pseudoalteromonas sp. SM9913]
 gi|315017173|gb|ADT70510.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Pseudoalteromonas sp. SM9913]
          Length = 303

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 12/177 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L     R+  L+  D L+ LLN           +       + ++++  DID FK +N
Sbjct: 131 EKLEAQTERLQSLASTDELTNLLNRREMNCRSVLLLEQAMRSKQSVALLIIDIDNFKVVN 190

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGH  GD+V+  L  +L         + R GGEEF      +++ +       L  +I
Sbjct: 191 DTFGHLEGDRVLKELGQRLKHFGRQTDLISRYGGEEFLIMVPDTNKADTLSFCQRLHLLI 250

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              +I + + P   +T S G +    K   + +  +AD A+Y AK+ G+NR   + +
Sbjct: 251 A--EIKVGNRP---VTASIGASLSTAKTTFTDLFAQADNAVYEAKERGKNRTQLYDN 302


>gi|307825343|ref|ZP_07655562.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307733518|gb|EFO04376.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 827

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 18/215 (8%)

Query: 66  VENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           +E+L++  +  T + +  Y+   + +     + ++I   +  D L+ L N       L  
Sbjct: 358 LEDLTVSAVKDTHANVTHYVGILTDITMNRAAADKIEHQAFYDTLTDLPNRLMLRDRLTP 417

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                   N   +++F D+D FK +ND  GH +GD ++  ++++LV        V RLGG
Sbjct: 418 ALALSQRNNHNGALLFIDLDNFKTLNDTLGHDIGDLLLQQVAERLVACVREGDTVARLGG 477

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSG------PSIHITISAGIAERCHKE 231
           +EF       SE     +     ++I N  + + S        + H T S GI     + 
Sbjct: 478 DEFVIMLEDLSEHANEAIVQI--EVIGNKVLGVFSQSFKLTTHNYHCTPSIGITLFKGQN 535

Query: 232 -PISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             I  ++ +AD A+Y AK SGRN  +CF D +  T
Sbjct: 536 LTIDELLKQADIAMYQAKASGRN-AMCFFDPQMQT 569


>gi|303247504|ref|ZP_07333776.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio fructosovorans JJ]
 gi|302491200|gb|EFL51092.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio fructosovorans JJ]
          Length = 305

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/191 (29%), Positives = 85/191 (44%), Gaps = 13/191 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEK 128
           IT+ ++   +   +  EL    + +  LS  D L+G+ N   F   L          N  
Sbjct: 111 ITVPIVQARVRAHV--ELKRRGDLLETLSMRDGLTGIPNRRRFDEYLNRAWRHALRCNTP 168

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGS 187
           LS++  DID FK  ND +GH  GD+ +  ++  L   +      V R GGEEFA     +
Sbjct: 169 LSMIMADIDDFKAYNDAYGHMAGDECLRAVAGALSGALRRPGDLVARFGGEEFAVVLEHT 228

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCH--KEPISTIIYRADQAL 244
               A  LA  +R  + +  +      +   +T+S G A           T+I  AD+ L
Sbjct: 229 ELPGALHLAEAMRAAVIDLDLGHEDSRAAQVVTVSLGAATLTPKAGMTPETLIGAADRML 288

Query: 245 YVAKKSGRNRV 255
           Y AK++GRNRV
Sbjct: 289 YAAKQAGRNRV 299


>gi|119945428|ref|YP_943108.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Psychromonas ingrahamii 37]
 gi|119864032|gb|ABM03509.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Psychromonas ingrahamii 37]
          Length = 674

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 88/215 (40%), Gaps = 13/215 (6%)

Query: 64  ILVENLSLVIISITISLLLGYISGS-ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  E L +  +     ++  Y++    +     + N I +L+  D L+ L N   FI  L
Sbjct: 194 IYPEYLRITAVKNAQGIVTNYVATRTDITASKAASNEIEKLAFYDPLTQLPNRRLFIDRL 253

Query: 123 GSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                      ++ +++F D+D FK +ND  GH +GD ++  ++++L         V R 
Sbjct: 254 NQALALSTHSRQRGALLFLDLDQFKTLNDTLGHDIGDLLLKKVTERLSASLRESDTVARF 313

Query: 176 GGEEFAAAALGSS--EQEAAILANDLRKIIENS--QINISSGPSIHITISAGIAER-CHK 230
           GG+EF       S    EAA    D+   I  S  Q         H T S G      H+
Sbjct: 314 GGDEFVVLLENLSTYSIEAAAQTRDIATKISLSLNQPYQLLDHVYHNTPSIGATLFIGHQ 373

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
                ++ +AD A+Y +K  G N +  F  +    
Sbjct: 374 LTAEELLKQADIAMYQSKAQGGNTLRFFDQMMQKA 408


>gi|114563356|ref|YP_750869.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114334649|gb|ABI72031.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 941

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 93/201 (46%), Gaps = 11/201 (5%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           ILV  L ++ +   + L+        +++   +   +  ++  D L+ L N S     L 
Sbjct: 740 ILVIGLLIITLIAIVILMSNRRLNVEIQKRLKAEENLRFMANHDNLTALPNRSLLDDRLA 799

Query: 124 SY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                      K +++F D+D FK IND +GH VGDK++  ++  L         V R G
Sbjct: 800 QATLTHHRDKSKFALLFIDLDGFKAINDQYGHHVGDKLLQRIALLLGKHVRESDTVARFG 859

Query: 177 GEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPIS 234
           G+EF         +E A  +A ++  ++   +  +    ++ I+ S GIA   +  +  +
Sbjct: 860 GDEFVVLLNHIEAKENARQVAENI--LLGLKKPLLIDDINVSISASIGIAIFPNDADTAA 917

Query: 235 TIIYRADQALYVAKKSGRNRV 255
           +++ ++DQ +Y AKK G ++ 
Sbjct: 918 SLLKKSDQLMYQAKKVGGHQY 938


>gi|322831258|ref|YP_004211285.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rahnella sp. Y9602]
 gi|321166459|gb|ADW72158.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rahnella sp. Y9602]
          Length = 672

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 8/187 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SGS + +   +  R+  L+  D ++G  N +A   SL           + +++ D+D FK
Sbjct: 218 SGSDITDERKAQERLRVLANTDLVTGFANRNALQESLARALIERGENNVGLIYLDLDNFK 277

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD ++  +SD +         + RLGG+EF   +  +  +    L+  + 
Sbjct: 278 KVNDAYGHMFGDHLLRAVSDAIQDCLSPNDKLARLGGDEFIILSTNAEIKALEALSQRVL 337

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + + +    I     ++   SAGIA    H      ++  AD A+Y AK+ G+N    FS
Sbjct: 338 RRL-SLPFRIGL-IEVYTGCSAGIAICPEHGTDGDILLQNADTAMYAAKEKGKNVHCVFS 395

Query: 260 DIENNTC 266
              N   
Sbjct: 396 PEMNEKA 402


>gi|294665480|ref|ZP_06730764.1| sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604734|gb|EFF48101.1| sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 375

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 13/173 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           ++      + + +R D L+GL N  AF            +  + LS+   D+D+FK +ND
Sbjct: 207 QMDALNADLVEQTRTDPLTGLPNRRAFAVALAAATEQTRAVGQPLSVALLDVDHFKTVND 266

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD V+  LS  L         + R GGEEF      +   +A +    LR+ + 
Sbjct: 267 VHGHDQGDAVLRELSTLLRAHMAGAGTIARYGGEEFVLLLPNADLLQARVQCEYLRQSVA 326

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              I +       +T+S G+A    +E +  +I RADQALY AK+ GR++VV 
Sbjct: 327 AMTIALP------VTVSIGVATLYPQESVEAVIKRADQALYAAKRGGRDQVVA 373


>gi|291085418|ref|ZP_06353032.2| diguanylate cyclase [Citrobacter youngae ATCC 29220]
 gi|291070928|gb|EFE09037.1| diguanylate cyclase [Citrobacter youngae ATCC 29220]
          Length = 570

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 11/177 (6%)

Query: 93  LFISYNRIS----QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           L ++  R+     + +  D L+GL N      +L           E +S +  DID+FK 
Sbjct: 388 LALANQRLRDALLEKALYDPLTGLRNRHHLEDTLRTQMSQAVRNKEPISCLMIDIDHFKN 447

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH  GD VI  ++  +  V        R GGEEF     G+ EQ A   A D+  
Sbjct: 448 INDRFGHEAGDSVIKSIAAIIQRVVHDSGLAFRYGGEEFLVLLAGADEQAANGFATDIYN 507

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +    +        H+ +S G+A          ++  AD ALY AK+ GR+R+V F
Sbjct: 508 GVRELSLRFGVSDIGHVDVSIGVASYPQHAQSDNLLRAADVALYRAKELGRSRIVSF 564


>gi|153827329|ref|ZP_01979996.1| ggdef family protein [Vibrio cholerae MZO-2]
 gi|149738749|gb|EDM53091.1| ggdef family protein [Vibrio cholerae MZO-2]
          Length = 461

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 57/214 (26%), Positives = 106/214 (49%), Gaps = 4/214 (1%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            I   ++ +   Y    + +    L++  +  +L L        ++L  +  ++S L++ 
Sbjct: 245 RILSRWVHIETIYPRYLMPILASGLLLSIVIYTLQLRRTVRLRTQQLEEANQKLSYLAKT 304

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ + N  +F   L +   +   L+++ FDID FK IND FGH  GD  I F+   + 
Sbjct: 305 DSLTDIANRRSFFEYLEAEQARSGSLTLMVFDIDDFKTINDRFGHGAGDNAICFVVGCVR 364

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
               +  +  R+GGEEFA  A G + +E+  LA  + + +   +  +++  S+ +TIS G
Sbjct: 365 QALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKKWVVNAQHSLSLTISLG 424

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            A   H     ++ + AD  +Y  K++G+N+VV 
Sbjct: 425 CAFYLHPARPFSL-HDADSLMYEGKRNGKNQVVF 457


>gi|90408005|ref|ZP_01216177.1| regulatory component of sensory transduction system [Psychromonas
           sp. CNPT3]
 gi|90310849|gb|EAS38962.1| regulatory component of sensory transduction system [Psychromonas
           sp. CNPT3]
          Length = 526

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 11/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
             + EL  +  +I  ++  D L+GL     F   L           +K++++F D+D FK
Sbjct: 329 QDITELKHAKKQILYMANHDALTGLAMRQFFQDRLIKALADAKLNKQKIAVLFLDLDGFK 388

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDL 199
           ++ND+FGH  GD V+  ++ +L         VGR+GG+EF        +QE+ I ++  L
Sbjct: 389 KVNDSFGHHTGDFVLKEVAIRLTESVREIDTVGRIGGDEFCILLTNIKDQESTITISEKL 448

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            KII+  +       SI I +S GIA    H +    ++  AD+A+Y  K+ GRN     
Sbjct: 449 IKIID--KPYKYKNESIDIGVSIGIALYPDHADTPEKLVELADKAMYTIKRKGRNNYALT 506

Query: 259 SDIEN 263
           +D ++
Sbjct: 507 TDAQS 511


>gi|330874805|gb|EGH08954.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 432

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 119/285 (41%), Gaps = 36/285 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL------FYIG 54
           + +S    L +WL  +    +    ++M    + +++F+ +   +   +L          
Sbjct: 141 LEQSYPVELQVWLA-DIRWPALHG-SWMSLIQLSYAMFLLSFAVLIWQYLEKPRPLHAAQ 198

Query: 55  LTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           +    GL + L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL 
Sbjct: 199 IVGLLGLFWALPKTFILPFTLNILCSQVMLMIAAAVAHEAY-------QMAFRDELTGLP 251

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A    +        +   D+D+FK+ ND  GH VGD+V+  ++ +L  +        
Sbjct: 252 GRRALNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGRAY 311

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-------------------P 214
           R GGEEFA      +  E       +R+ I N  I + +                     
Sbjct: 312 RYGGEEFAIVFAAKTIDECMPHLEAIRETIANYAIQLRNKDSRPQDDQQGRQRRSGAHEA 371

Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           S+ +T+S G+AER         ++  ADQALY AK +GRN VV +
Sbjct: 372 SVSVTVSIGVAERQPEHRTPEEVLKSADQALYAAKGAGRNCVVAY 416


>gi|325271495|ref|ZP_08138013.1| diguanylate cyclase [Pseudomonas sp. TJI-51]
 gi|324103385|gb|EGC00714.1| diguanylate cyclase [Pseudomonas sp. TJI-51]
          Length = 427

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 72/282 (25%), Positives = 121/282 (42%), Gaps = 33/282 (11%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMI--YFSIFFSIFIATVI--FIANIFLFYIGLT 56
           + +S  + L  WL   +          +I   + +   +FI  V+    A   L    + 
Sbjct: 141 LEQSYPEALLTWLAEIRWPTLHGQWMSLIQLAYPLVAGVFILLVVQYLRAPRPLHAAQII 200

Query: 57  PFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH 115
              G+ ++L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL   
Sbjct: 201 GLLGIFWMLPQTFILPFTLNIMCSQVMLMIAAAVAHEAY-------QMAFRDELTGLPGR 253

Query: 116 SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            A    +        I   D+D+FK+ ND  GH VGD+V+  ++ +L  V G        
Sbjct: 254 RALNERMQRLGRNYVIAMTDVDHFKKFNDTHGHDVGDQVLRLVASRLAKVTGGGRAYRYG 313

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-------------------SSGPSI 216
           G EEFA    G + +E       +R++I N  +++                   SSG ++
Sbjct: 314 G-EEFALVFAGKTAEECVPHVEAVREVIANYVMHLRDKYNRPQDDTAGRQRRAGSSGGTV 372

Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
            +TIS G+AER         ++  ADQALY AK +GRN VV 
Sbjct: 373 SVTISIGVAERQADHRNPEAVLKSADQALYDAKGAGRNCVVV 414


>gi|313683100|ref|YP_004060838.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM
           16994]
 gi|313155960|gb|ADR34638.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM
           16994]
          Length = 283

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 11/180 (6%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFD 135
             I    +++          +++ID L+ L N ++       FI     Y    S++  D
Sbjct: 107 AIIGYQAVRQNITDEALFETMAKIDPLTRLYNRNSIEEFAQLFIDEAQRYQTSFSVIMVD 166

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D FK IND +GHPVGD+V+  LS     +  +   +GR GGEEF      ++  +A  L
Sbjct: 167 LDDFKHINDVYGHPVGDEVLKKLSVIFQDLIRSSDRIGRWGGEEFIILCPQTTYLQAKEL 226

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A  LR    + +           T S G+A    ++ I ++I +AD ALY +K+ G+NRV
Sbjct: 227 AERLRFGFSSHEFEEIGYK----TASFGVALFEDEDTIESLIVKADNALYDSKRLGKNRV 282


>gi|291617596|ref|YP_003520338.1| YciR [Pantoea ananatis LMG 20103]
 gi|291152626|gb|ADD77210.1| YciR [Pantoea ananatis LMG 20103]
 gi|327394025|dbj|BAK11447.1| diguanylate cyclase/phosphodiesterase YciR [Pantoea ananatis
           AJ13355]
          Length = 669

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 89/189 (47%), Gaps = 16/189 (8%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-----SIVFFDIDYFK 140
           SG+ + E   +  R+  ++  D ++GL N  A    +    E+       +V+ D+D FK
Sbjct: 227 SGTDITEERRAQERLRVMANTDGITGLPNRHAIHQQISHALERAEGSETGVVYLDLDNFK 286

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           ++ND +GH  GD+++  +S  ++        +GRLGG+EF   A  +S    E  A  + 
Sbjct: 287 KVNDAYGHMFGDQLLQAVSLAILSCLSKNQTLGRLGGDEFVVLAEHTSQAALEAMATRIL 346

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
           + LR+      I + SG       S GIA    H E    +I  AD A+Y AK++ R   
Sbjct: 347 DRLRQPFRIGLIEVYSG------CSVGIALAPLHGEDRECLIRNADTAMYHAKENNRGSY 400

Query: 256 VCFSDIENN 264
             F++  N 
Sbjct: 401 CVFAEEMNR 409


>gi|284041657|ref|YP_003391997.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
 gi|283945878|gb|ADB48622.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
          Length = 740

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 11/184 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           SG  + E   +  +++ L+  D L+GL N +     L             +++V   +D 
Sbjct: 294 SGEDVTERRRAEAQLAYLAHHDRLTGLPNRAPLEEQLQRDLARARRTGGSVALVQVGLDN 353

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND+ GH  GD V++  + ++  +      + R GG+EF         +EA ++A  
Sbjct: 354 FKLVNDSLGHAAGDAVLSETAQRVAQLTRAGDVIARQGGDEFMLLL-DCGAEEAQVVAQL 412

Query: 199 L--RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
              R +    Q    +G   HI  S GIA    +     ++   AD A++ AK+SG   V
Sbjct: 413 AGDRVMAALEQPFAVAGAEFHIGASIGIALFPGNANNAESLFKHADMAMHQAKRSGGGAV 472

Query: 256 VCFS 259
           V + 
Sbjct: 473 VFYE 476


>gi|148978394|ref|ZP_01814888.1| GGDEF domain protein [Vibrionales bacterium SWAT-3]
 gi|145962420|gb|EDK27699.1| GGDEF domain protein [Vibrionales bacterium SWAT-3]
          Length = 657

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 10/175 (5%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFG 147
               R+  L+  D L+GL N +     +          +++ ++++ D+D FK +NDN+G
Sbjct: 485 KEMERLEHLAHHDALTGLANRARLYKVMDEVVSSSNYASQQFAVIYLDLDGFKHVNDNYG 544

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD ++  +S++L+        V RL G+EF      +++   A LA  L  +I   Q
Sbjct: 545 HDAGDAILKEVSNRLLSQVRAGDLVARLSGDEFVLIIKQTNKVMLAKLAERLLTLI--GQ 602

Query: 208 INISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                  S+++  S GI    + E  I  I+  AD+A+Y AK  G+ + V  SD+
Sbjct: 603 TVHHKQRSLNVGASLGIHLVDNSEHDIDAILKIADEAMYHAKHQGKGQFVFSSDV 657


>gi|77361433|ref|YP_341008.1| sensory box protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76876344|emb|CAI87566.1| conserved protein of unknown function ; putative sensory box
           protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 1007

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 81/187 (43%), Gaps = 10/187 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           + L E   +   I + +  D L+ L N       L           E+L I+  DID+FK
Sbjct: 560 TDLTEKKQADALIWKQAHFDHLTDLPNRLELKKRLNECFMRVENNAEQLVIMLLDIDHFK 619

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND  GH  GD ++ F+S +++       FV R+GG+EF        EQ    +A ++ 
Sbjct: 620 DVNDTLGHHYGDALLKFVSQRILESAKNAEFVARIGGDEFVIVFSKIKEQHIKQIAENI- 678

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++  S         + I+ S GIA      E    ++  ADQA+Y AK +GRN    FS
Sbjct: 679 -LLSLSSAIYIENEELFISASIGIASAPNDGENTEQLLKAADQAMYKAKVNGRNGFEFFS 737

Query: 260 DIENNTC 266
                  
Sbjct: 738 HDMREKA 744


>gi|326795281|ref|YP_004313101.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinomonas mediterranea MMB-1]
 gi|326546045|gb|ADZ91265.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinomonas mediterranea MMB-1]
          Length = 1025

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 10/184 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
             +        R+  L+  D L+ L N +     L           + ++++F D+D FK
Sbjct: 574 RDITRHIKLQQRLKFLAYSDPLTSLHNRTFMAEQLERSIKVANQAGDTVALLFLDLDKFK 633

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND  GH  GD+++  ++ +L  +      + R GG+EF        S+     LAN +
Sbjct: 634 LINDTLGHKAGDELLCEVASRLNSISHIDDVIARWGGDEFLIMVTDKVSKPRIEDLANRI 693

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              ++     +  G  + +  S GIA     E    +I RAD A+Y AK+SGR  +  + 
Sbjct: 694 LTAMKT--PFLLEGKPVEVATSVGIALSEKDETAEKLIQRADSAMYAAKQSGRGVLRFYD 751

Query: 260 DIEN 263
           +  +
Sbjct: 752 EHMS 755


>gi|294340619|emb|CAZ89009.1| hypothetical protein; putative EAL, GGDEF and PAS/PAC domains
           [Thiomonas sp. 3As]
          Length = 697

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 10/180 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---GSY---NEKLSIVFFDIDYFKQ 141
             +  +     ++  L+  D L+GLLN   F   L     +       ++   D+D FK+
Sbjct: 122 QDVTAIQEQQKQLEYLTERDPLTGLLNRRGFDRRLTMLERHPLGQHGFTLALIDLDDFKR 181

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND  GHP GD V+A ++D+L  +        R+GG+EFA       +E++A  +   L 
Sbjct: 182 VNDTLGHPAGDAVLAEVADRLKALVRLTDMPARIGGDEFALLMPECRTEEQAVQIGERLL 241

Query: 201 KIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +++   +    +G  +  + S G+A +R      + +  RAD ALY AK +GRNR   FS
Sbjct: 242 RVMA--KPMQIAGVELWQSCSIGLAVQRGSGRSSTPMFQRADLALYDAKTAGRNRFKLFS 299


>gi|86360385|ref|YP_472273.1| hypothetical protein RHE_PE00107 [Rhizobium etli CFN 42]
 gi|86284487|gb|ABC93546.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 667

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 70/269 (26%), Positives = 118/269 (43%), Gaps = 32/269 (11%)

Query: 27  FMIYFSIFFSI-FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI 85
           FM+  ++FFS  F   ++  A   L +IG    +    +L+  L L    I+  +   Y+
Sbjct: 132 FMMSVNLFFSFRFPVALVASATNVLIFIGALCLFA-PMLLLHKLILGAFCISCFIFTSYV 190

Query: 86  SGSILKELF-----ISYNRISQ------------LSRIDCLSGLLNHSAFISSLGSYNE- 127
           +  + +E +         R+ Q            LS  D L+GL N  A    L  + + 
Sbjct: 191 NLQLNRERYKVFLNALEARLQQAAADERGKALLHLSNTDALTGLENRRAIDQHLREHWQL 250

Query: 128 ------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEF 180
                   +++  D+DYFK+ ND +GH  GD+ +  +S  L  V  +    +GR GGEEF
Sbjct: 251 WQDHRAPFAVLLIDVDYFKRYNDCYGHQEGDRCLVAVSQILQSVASSWGSIIGRYGGEEF 310

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINIS---SGPSIHITISAGIA-ERCHKEPISTI 236
                    + A  LA  +   +            G ++ IT+S G++  R   + +  +
Sbjct: 311 LVVTPMPDLERATDLAEAMCAAVRALAWPHEHRRDGTTV-ITVSVGLSYTRDETKQVDKV 369

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENNT 265
           IY AD+ALY AK +GR+ +V F   +  +
Sbjct: 370 IYEADRALYAAKATGRDNLVVFDPEDPQS 398


>gi|34495986|ref|NP_900201.1| hypothetical protein CV_0531 [Chromobacterium violaceum ATCC 12472]
 gi|34101840|gb|AAQ58208.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 400

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 18/195 (9%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS-------AFISS 121
           L + II+  +++LL  +    L ++     ++  L+  D L+ L N           +++
Sbjct: 202 LVMWIIASAMAILLVRLLHKWLGQMRSLMQKLEALAGTDELTQLPNRRTWDIQIEMMLAT 261

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              Y + +++  FD+D+FKQ ND++GHP GD+++  ++  +           R GGEEF 
Sbjct: 262 ARRYRQPIAVALFDLDHFKQFNDSYGHPEGDRLLREVAVLIKSRMRQSDLFARFGGEEFV 321

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
            A +  +  +AA     LR  + + Q           T S G+      E I + + RAD
Sbjct: 322 LALMDCNLDQAAARIESLRGNLPDQQ-----------TFSVGVTVWLEGERIHSTLARAD 370

Query: 242 QALYVAKKSGRNRVV 256
           +ALY+AK  GR+RVV
Sbjct: 371 KALYLAKNGGRDRVV 385


>gi|255524895|ref|ZP_05391843.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium carboxidivorans P7]
 gi|255511373|gb|EET87665.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium carboxidivorans P7]
          Length = 916

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 93/192 (48%), Gaps = 12/192 (6%)

Query: 80  LLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           ++  YI+  + + ++  + +++  L+  D L+G+ N + F   L +           +++
Sbjct: 463 IIENYIAISTDITKIKKTEDKLQSLAYYDLLTGIPNRTLFYERLENALIRANNNKGSVAL 522

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQ 190
           +F D+D FK IND+ GH  GD ++  ++ ++         V RLGG+EF       ++ +
Sbjct: 523 LFMDLDGFKVINDSLGHAAGDLLLKEVAARIESSISRSDTVSRLGGDEFTVILENVNNHE 582

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKK 249
           +A   A  +   I         G  I + +S GIA   + E  +  ++ +AD A+Y AK+
Sbjct: 583 DAKAAAESIIGKI--LLPYSILGREITLGVSIGIALSPYDESTVEGLVRKADAAMYDAKE 640

Query: 250 SGRNRVVCFSDI 261
           SG+ +    SD 
Sbjct: 641 SGKGKYSFSSDE 652


>gi|238759046|ref|ZP_04620216.1| Sensory box protein [Yersinia aldovae ATCC 35236]
 gi|238702723|gb|EEP95270.1| Sensory box protein [Yersinia aldovae ATCC 35236]
          Length = 348

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 18/179 (10%)

Query: 92  ELFISYNRISQ-------LSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDID 137
           EL  +  R+ Q       LS  D L+   N                 + + LS++  D+D
Sbjct: 172 ELREANLRLQQQLKIKKNLSETDVLTSTANRYLLEKVLKHEYNRAKRFCQPLSLLSLDVD 231

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK IND +GH VGD  +  + D +         +GR GG+EF      +   EA  +A 
Sbjct: 232 NFKSINDKYGHIVGDLALTHIVDIIRNNIREVDVLGRWGGDEFMIVLPNTQLDEAKAIAE 291

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +RK++E   ++     +I++T+S GI E    E    ++ RAD+ LY AK +G+N + 
Sbjct: 292 KIRKLVETIPVD----SNINVTMSLGIVELQQNESQDQLLIRADKMLYNAKAAGKNTIR 346


>gi|238762257|ref|ZP_04623229.1| hypothetical protein ykris0001_1740 [Yersinia kristensenii ATCC
           33638]
 gi|238699604|gb|EEP92349.1| hypothetical protein ykris0001_1740 [Yersinia kristensenii ATCC
           33638]
          Length = 462

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 11/185 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVF 133
           ++ Y S   + EL  S + +  LS+ D L+G+ N   F +   +  +K       LS++ 
Sbjct: 275 VIWYGSFFDITELKQSESILKALSQTDVLTGVANRRHFDNLYQNLWQKNHIEGGSLSVLM 334

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            D D FK  ND +GH +GD  +  + + L   + G    + R GGEEF      S+  +A
Sbjct: 335 IDFDNFKSFNDLYGHAMGDVCLKSIVETLAKSIRGGSDILARYGGEEFIVLLAPSTLADA 394

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKK 249
             +A  +R  IE   I     P   +TIS G+A   E         +   AD+ALY AK 
Sbjct: 395 TAVAERMRHSIEELDIPHGMSPHGCVTISVGVASVSEPGEHLSAKDLSDAADKALYRAKT 454

Query: 250 SGRNR 254
           +G+ R
Sbjct: 455 AGKTR 459


>gi|242280925|ref|YP_002993054.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens
           DSM 2638]
 gi|242123819|gb|ACS81515.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens
           DSM 2638]
          Length = 299

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 81/174 (46%), Gaps = 8/174 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQIN 143
            +L      + Q +  D L+G+ N          F  S+    + L ++F DID FK +N
Sbjct: 125 TDLAYDLELLRQEAMTDPLTGMANRRYMDQAAVHFEESIKHEKQSLGVLFVDIDNFKSVN 184

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGH  GDK +  ++  ++          R GGEEF         ++   LA  +RK+I
Sbjct: 185 DRFGHDTGDKALTMVAKTMLSALRPTDIASRWGGEEFVIFVPHVDAEKLGSLAERIRKLI 244

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           E S I+ +   SI +T S G       E I + I RAD+  Y+ K+SGRN +  
Sbjct: 245 ELSWID-TEKASISVTASIGGTIVKPNETICSAIKRADEKAYLCKQSGRNCIHI 297


>gi|261406493|ref|YP_003242734.1| PAS/PAC sensor-containing diguanylate cyclase [Paenibacillus sp.
           Y412MC10]
 gi|261282956|gb|ACX64927.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus sp.
           Y412MC10]
          Length = 539

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 87/197 (44%), Gaps = 25/197 (12%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
            + +       + Q++  D L+ + N S F+              E L+ + FDID+FK+
Sbjct: 345 DVTDKARLQEELRQMAYYDGLTRIYNRSHFMKLSYALLNQAVRNREPLAFLLFDIDHFKR 404

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH +GD+ +  + +             R GGEEFA A  G S  EA   A  +R 
Sbjct: 405 INDVYGHDIGDQALQHIVELTRKTLRAEDLFARYGGEEFAVAMPGQSTSEATAAAERIRA 464

Query: 202 IIENSQINISSGPSIHITISAGIA---ERCHKEPIST-------------IIYRADQALY 245
            +    +    G S+ IT S G+A      H   +               ++ +AD+ALY
Sbjct: 465 KLLAQPMTTPQG-SLMITASFGVAAVKTSSHNGTVDAEAEEAWWDTELKKVLKQADRALY 523

Query: 246 VAKKSGRNRVVCFSDIE 262
            AK+SGRN +   SD E
Sbjct: 524 EAKRSGRNTIRV-SDEE 539


>gi|126641116|ref|YP_001084100.1| GGDEF [Acinetobacter baumannii ATCC 17978]
          Length = 390

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 11/239 (4%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           M+   +  +  +   + + ++   YI L        IL  ++S ++IS   SL L     
Sbjct: 141 MLCVGLLAAFLVFAFLILLDVNCDYIALGRALFGSCILGFSISSMLISRERSLFLNNQLA 200

Query: 88  SILKE-LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139
            I ++ L I  + +  LS+ D L+ + N   F                 L+++F DID+F
Sbjct: 201 EINEQILRIEASELLHLSQQDALTQISNRRTFDEMFDFFYYRANQEKRPLAVLFIDIDFF 260

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND +GH +GDKVI+ ++  +        FV R GGEEF      +  Q A  +A ++
Sbjct: 261 KNYNDFYGHQMGDKVISSIAAAIKNSIRHVDFVARYGGEEFVVLLPETPAQGAYSVAANI 320

Query: 200 RKIIENSQINISSG-PSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRV 255
            K IE   I  ++   S ++TIS G         +    +I+ ADQALY AK+ GRN++
Sbjct: 321 YKAIERQAIPHAASLVSKYVTISLGFTVYTGGLKMGQDRLIHAADQALYRAKQLGRNQI 379


>gi|109897081|ref|YP_660336.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109699362|gb|ABG39282.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
          Length = 350

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 70/277 (25%), Positives = 120/277 (43%), Gaps = 43/277 (15%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYI-GLTPFYGLEYILVENLSLVIISITIS---- 79
            T  I+   F  I   +++  A I +  +  L+P     ++   NLSL+++ + I+    
Sbjct: 78  FTLAIFDERFTPIIHISMLATAGISVSALFALSPRLRFAFV---NLSLLMMPVMITGFLT 134

Query: 80  -----------LLLGYISGSILK-------------ELFISYNRISQLSRIDCLSGLLNH 115
                      + L YISG  ++             EL      +  LS+ D L+ + N 
Sbjct: 135 DGFLPLAGMMLVFLLYISGIGIRSNKEYKRSFEIEIELQAQRRELETLSQTDALTSIYNR 194

Query: 116 SAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFG 167
             F             +  +++++  D D+FK +ND +GH  GD  +  L+  +   +  
Sbjct: 195 GYFNQYFENLWHHATRHKIEIALLIIDADHFKSVNDTYGHLGGDACLIHLAHAINKPINR 254

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE- 226
                 R GGEEFA    G + Q++  +A+ + + I+  +        I IT+S GIA  
Sbjct: 255 ATDIAVRYGGEEFAILLSGCNPQQSKKMADAIMQSIQQHKFVYQDS-EIPITVSIGIATL 313

Query: 227 -RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
                +  + +I +AD ALY AK +GRNR V FS  +
Sbjct: 314 VPSPHQKSNELIEQADSALYRAKATGRNRAVLFSPDD 350


>gi|322435543|ref|YP_004217755.1| diguanylate cyclase with PAS/PAC sensor [Acidobacterium sp.
           MP5ACTX9]
 gi|321163270|gb|ADW68975.1| diguanylate cyclase with PAS/PAC sensor [Acidobacterium sp.
           MP5ACTX9]
          Length = 620

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 9/172 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +L      + +L+  D L+ L N   F   L             LS++  D+D+FK+ ND
Sbjct: 427 DLTRQNMHLEELAGNDELTRLANRRTFNRMLTQEVARHARAKNSLSMLMVDVDFFKKYND 486

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GHP GD  +  +++ + +      F  R+GGEEF      + +  A   A  +   IE
Sbjct: 487 RYGHPEGDVCLRMVAESIQIASRASDFAARVGGEEFTVLLPDTDQAGAEQAAQRILSHIE 546

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNR 254
           + QI     P  ++T+S G A    +       +I +AD+ALY +KK+GRNR
Sbjct: 547 SLQIRHEGSPFGYVTVSIGAATWPPEFVADEAYLIQQADRALYESKKTGRNR 598


>gi|296102838|ref|YP_003612984.1| diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295057297|gb|ADF62035.1| diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 490

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/202 (30%), Positives = 97/202 (48%), Gaps = 12/202 (5%)

Query: 68  NLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
            L+++I+  T++L++  Y   S L         +  ++  D L+GL N   F   +    
Sbjct: 286 QLAVLILIFTVALIVASYFLYSDLSRKTRDNKELKIIASEDALTGLFNRRTFDEKILSEI 345

Query: 123 ---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGE 178
                 +  +SI+  D+DYFK+ NDN+GHP GD+ +  L + L          V R GGE
Sbjct: 346 AACADNDTPISILIVDVDYFKKYNDNYGHPEGDRCLTLLGNSLRESLTRNNQLVARYGGE 405

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PIST 235
           EFA     +  QEA  LA  + + + +  I  +  P   +T+S G++     +       
Sbjct: 406 EFALILPDADIQEAIRLAQTIIRNVFSLHIEHAFSPFGRVTVSVGVSTARAVDIAGSQQN 465

Query: 236 IIYRADQALYVAKKSGRNRVVC 257
           II  ADQALY AK++GRNR   
Sbjct: 466 IIIAADQALYQAKRAGRNRYAF 487


>gi|254414962|ref|ZP_05028725.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196178109|gb|EDX73110.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1393

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 13/214 (6%)

Query: 64   ILVENLSLVIISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
            I+   L +V++       L YIS  + + +      ++   +  D L+GL N + F+  L
Sbjct: 921  IVNAILKVVLVRDAQGQPLHYISQVVDISDRKRMEEQLLHDAFHDVLTGLPNRALFMDRL 980

Query: 123  G----SYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
                    ++     +++  D+D FK IND+ GH VGD++++ ++++L         + R
Sbjct: 981  EYALRRAGQRWDYLCAVIVLDLDRFKVINDSLGHLVGDRLLSAIAERLQGCLRPSDTLAR 1040

Query: 175  LGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EP 232
            LGG+EF        +   A  +A  + + +E+S      G  +  T S GIA        
Sbjct: 1041 LGGDEFTILLDDIPNTAAATDIAKSIHQTLESS--FNLDGYEVFATASIGIALSGMGYHR 1098

Query: 233  ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
               ++  AD A++ AK  G    V F    +   
Sbjct: 1099 AEDLLRDADTAMHRAKLQGTACYVMFDTAMSGRA 1132


>gi|39933467|ref|NP_945743.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           CGA009]
 gi|192288826|ref|YP_001989431.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris TIE-1]
 gi|39647313|emb|CAE25834.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS domains [Rhodopseudomonas palustris CGA009]
 gi|192282575|gb|ACE98955.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris TIE-1]
          Length = 745

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
            ++   + E   +  R++ ++  D L+GL N ++    L           EK++++F  I
Sbjct: 286 LLALMDITERKRAEMRLAFMAHHDGLTGLPNRNSLRKRLDELLIQTRRTGEKIAVLFVGI 345

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAIL 195
           D FK +ND  GH VGDK++  ++ +L         + RL  +EFA    G    ++  +L
Sbjct: 346 DNFKAVNDTLGHAVGDKLLRGVARRLRSTLREEDPLARLNSDEFAVIQTGIKRPEDIVLL 405

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A  L   I   +  +  G S+ +  S GIA      +    ++  AD AL  AKK  R  
Sbjct: 406 AKRLLHAIA--EPYLLQGHSVVVGASIGIAVAPGDGDDSEKLLMNADMALSRAKKDTRGT 463

Query: 255 VVCFS 259
              F 
Sbjct: 464 FSFFE 468


>gi|330504403|ref|YP_004381272.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
 gi|328918689|gb|AEB59520.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
          Length = 698

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 91/182 (50%), Gaps = 12/182 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSY---NEKLSIVFFDIDYF 139
            ++L +L  +   + Q++  D L+ LLN   F     ++L  +      L+++F DID+F
Sbjct: 245 NTLLVQLDQAKASLEQVAHFDPLTELLNRRGFNRVFAATLEEHAVTGRTLAVMFLDIDHF 304

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND+ GH  GD+++  ++ ++         + R GG+EF   A   S  +   LA  +
Sbjct: 305 KRINDSLGHDAGDELLRVVAQRIRAALRERDIIARFGGDEFCVVASLDSNADPRGLAARM 364

Query: 200 RKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +E  +  IS +G  I +T S GI+           ++  AD ALY +K SGRN V  
Sbjct: 365 ---LEQMKEPISLAGRKIVMTTSVGISLFPQDGSSADELLKHADLALYQSKGSGRNVVHF 421

Query: 258 FS 259
           F+
Sbjct: 422 FN 423


>gi|256157697|ref|ZP_05455615.1| response regulator PleD [Brucella ceti M490/95/1]
 gi|256253331|ref|ZP_05458867.1| response regulator PleD [Brucella ceti B1/94]
 gi|261220447|ref|ZP_05934728.1| response regulator receiver modulated diguanylate cyclase [Brucella
           ceti B1/94]
 gi|265996202|ref|ZP_06108759.1| response regulator receiver modulated diguanylate cyclase [Brucella
           ceti M490/95/1]
 gi|260919031|gb|EEX85684.1| response regulator receiver modulated diguanylate cyclase [Brucella
           ceti B1/94]
 gi|262550499|gb|EEZ06660.1| response regulator receiver modulated diguanylate cyclase [Brucella
           ceti M490/95/1]
          Length = 462

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 81/174 (46%), Gaps = 9/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L  S  R    S  D L+GL N           ++      + LSI+  D+D+FKQ+N+ 
Sbjct: 286 LRQSMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQ 345

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD V+   S +L         + R GGEEF      +  Q A  +A  +R I+  
Sbjct: 346 YGHGAGDHVLREFSGRLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRGIVAE 405

Query: 206 SQINISSGP-SIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +  G     +T+S G+ A R   + +  +  RA  AL  AK+SGRNR+V 
Sbjct: 406 APFVLDDGKRRASLTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIVL 459


>gi|152981134|ref|YP_001352907.1| signal transduction protein [Janthinobacterium sp. Marseille]
 gi|151281211|gb|ABR89621.1| signal transduction protein [Janthinobacterium sp. Marseille]
          Length = 898

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 13/187 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDID 137
           I+   + E       +S+L+  D L+ L N   F+S L    E        L+I+F D+D
Sbjct: 446 ITLRDISEPKRHEREMSRLATEDGLTALPNRHWFMSYLPKALENARANATMLAILFIDLD 505

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILA 196
            FK +ND  GH  GD+++  ++ +L  V      V R+GG+EF        SE+EAA +A
Sbjct: 506 DFKNVNDTLGHSAGDQLLCTVAKRLRSVLRPSDKVIRIGGDEFTVILEAIHSEEEAAHIA 565

Query: 197 NDLRKIIENSQINIS---SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
           + + + +      IS   +     I  S GI+      + + T++  AD A+Y AK   +
Sbjct: 566 HAINQALRE-PFEISRDTTSQKNRIGGSIGISIFPRDGQDVETLVKNADIAMYAAKTGSK 624

Query: 253 NRVVCFS 259
            +   + 
Sbjct: 625 GQFRFYD 631


>gi|39995644|ref|NP_951595.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
 gi|39982407|gb|AAR33868.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
          Length = 682

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 85/196 (43%), Gaps = 13/196 (6%)

Query: 82  LGYISGSIL--KELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIV 132
           +G I G+IL   E   +   I QL+  D L+GL N        S  +S          ++
Sbjct: 218 IGGIVGTILDITERKRAEEAIQQLAYFDALTGLPNRTLLRDRVSQLLSQARREGGGFGVL 277

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D FK +ND+ GH  GD +++ ++ ++         V RLG +EF     G   +E 
Sbjct: 278 HLDVDRFKGVNDSLGHACGDVLLSTVAGRIASSIRESDTVARLGSDEFVVILPGVGHEE- 336

Query: 193 AILANDLRKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
             +   +RKI+E     I   G  I  T S GIA           ++  AD A++ AK+ 
Sbjct: 337 -DVVAVVRKIVEELNRPIVIQGNDIFCTASIGIAIYPTDGSSADILLKNADMAMHKAKEF 395

Query: 251 GRNRVVCFSDIENNTC 266
           G +    +S   N+  
Sbjct: 396 GGDGYQFYSSELNHRA 411


>gi|293605461|ref|ZP_06687843.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292816189|gb|EFF75288.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 404

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 112/244 (45%), Gaps = 14/244 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK-E 92
           FF++ I+ +  +  +    I      GL+ + +++   +I  I +S L   +  SI+   
Sbjct: 155 FFALLISGICVLNALKFLKIVDG---GLDALHMDSRFQMIFYIYMSTLATIVPPSIVWLV 211

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFG 147
           L    + +  ++  D ++ LLN    + +L             ++  D+D+FK+IND +G
Sbjct: 212 LRRLTDSLRNMAARDPMTDLLNRRGLLEALTQSFNARNAGPARLLLLDVDHFKRINDTYG 271

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+VI  ++D L          GR+GGEEF A  L +       LA  LR  +E   
Sbjct: 272 HQAGDEVICQVADILRSTVRRGDLTGRIGGEEFVAVFLDADGDRVIHLAERLRASVEGHV 331

Query: 208 INISSGP-SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV---CFSDIE 262
           IN++    ++  T++ GI+   H    +   +  AD ALY  K +GR R+     FS I 
Sbjct: 332 INVAGSAGALRCTVTIGISPPFHGVHDLEEALRHADAALYRGKAAGRYRIESADVFSSIP 391

Query: 263 NNTC 266
             + 
Sbjct: 392 AESA 395


>gi|229101383|ref|ZP_04232127.1| Sensory box/GGDEF [Bacillus cereus Rock3-28]
 gi|228682088|gb|EEL36221.1| Sensory box/GGDEF [Bacillus cereus Rock3-28]
          Length = 569

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 89/175 (50%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  I++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIAGKKEFGIIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTNEHTQDEMRQLATSVLSCFQA-- 252

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 253 PFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 307


>gi|251797774|ref|YP_003012505.1| diguanylate cyclase with GAF sensor [Paenibacillus sp. JDR-2]
 gi|247545400|gb|ACT02419.1| diguanylate cyclase with GAF sensor [Paenibacillus sp. JDR-2]
          Length = 653

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 13/167 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDK 153
           +  + ++   D L+GL         + S   K    +++  DID+FKQIND FGH VGD+
Sbjct: 490 HAEVRRMVITDNLTGLHARHYLNEQIQSRQRKDPLGALILVDIDHFKQINDTFGHQVGDQ 549

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  +S  +           R GGEE A    G   ++A  +A  +R  +E     +   
Sbjct: 550 ILVQVSSIIRSSIRQGDIAARWGGEELAVYLPGIRSEQAYRIAERIRTHVEAETQPV--- 606

Query: 214 PSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVC 257
               +T+S G++E   +     + ++ YRAD ALY AK +GRNR+  
Sbjct: 607 ----VTVSCGVSEWTFENEKISVESLFYRADMALYEAKNNGRNRIYI 649


>gi|167631722|ref|ZP_02390049.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442]
 gi|170685550|ref|ZP_02876774.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465]
 gi|254685102|ref|ZP_05148962.1| sensory box/GGDEF family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254743263|ref|ZP_05200948.1| sensory box/GGDEF family protein [Bacillus anthracis str. Kruger B]
 gi|167532020|gb|EDR94656.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442]
 gi|170670910|gb|EDT21649.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465]
          Length = 828

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 96/200 (48%), Gaps = 10/200 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           +++V I I       Y+    + ++    ++I+ L+  D ++ + N   F   L    E+
Sbjct: 366 VTIVPIMIEGQTFGSYVMVKDITKMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIER 425

Query: 129 -------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                    +++ D++ FK IND  GH +GD V+  ++ +        + + R+GG+EFA
Sbjct: 426 AQKTQGEFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSIPLARIGGDEFA 485

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRA 240
                 +EQ+   L  +L +I E  +  + +  S ++++S GIA         +T++  A
Sbjct: 486 VLVHNHTEQQLLDLCENLFRITE--KPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHA 543

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D A+Y AK+ G N V  + +
Sbjct: 544 DIAMYSAKEKGNNAVCMYDE 563


>gi|153825257|ref|ZP_01977924.1| GGDEF family protein [Vibrio cholerae MZO-2]
 gi|149741085|gb|EDM55144.1| GGDEF family protein [Vibrio cholerae MZO-2]
          Length = 976

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 22/228 (9%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI------------- 95
           F +   + P +     ++    ++ +++ +SL++  I     +EL++             
Sbjct: 739 FSYVFIIEPHWWQRKEVIVMAGMLFLALAVSLVMWRIRILKRRELYLVEQVALQTQKLRL 798

Query: 96  SYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
              +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIND + H
Sbjct: 799 QAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIAVLDIDHFKQINDRYSH 858

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+ I  +S +L+   G    V R GGEEF    +G   ++A      LR  IE   +
Sbjct: 859 IIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVG-DPKQAWGYFEKLRCKIEQVDL 917

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  + P +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 918 SAVA-PGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 964


>gi|17989005|ref|NP_541638.1| response regulator PleD [Brucella melitensis bv. 1 str. 16M]
 gi|23500354|ref|NP_699794.1| response regulator PleD [Brucella suis 1330]
 gi|161620672|ref|YP_001594558.1| response regulator PleD [Brucella canis ATCC 23365]
 gi|163844762|ref|YP_001622417.1| response regulator PleD [Brucella suis ATCC 23445]
 gi|225686396|ref|YP_002734368.1| response regulator PleD [Brucella melitensis ATCC 23457]
 gi|254699847|ref|ZP_05161675.1| response regulator PleD [Brucella suis bv. 5 str. 513]
 gi|254702985|ref|ZP_05164813.1| response regulator PleD [Brucella suis bv. 3 str. 686]
 gi|256015387|ref|YP_003105396.1| response regulator/GGDEF domain protein [Brucella microti CCM 4915]
 gi|256043507|ref|ZP_05446434.1| response regulator PleD [Brucella melitensis bv. 1 str. Rev.1]
 gi|256262463|ref|ZP_05464995.1| GGDEF:Response regulator receiver [Brucella melitensis bv. 2 str.
           63/9]
 gi|260564702|ref|ZP_05835187.1| GGDEF domain-containing protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260568102|ref|ZP_05838571.1| GGDEF domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|261750320|ref|ZP_05994029.1| response regulator receiver modulated diguanylate cyclase [Brucella
           suis bv. 5 str. 513]
 gi|261753594|ref|ZP_05997303.1| response regulator receiver modulated diguanylate cyclase [Brucella
           suis bv. 3 str. 686]
 gi|265989925|ref|ZP_06102482.1| response regulator receiver modulated diguanylate cyclase [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|294853592|ref|ZP_06794264.1| two-component system response regulator [Brucella sp. NVSL 07-0026]
 gi|17984843|gb|AAL53902.1| response regulator protein [Brucella melitensis bv. 1 str. 16M]
 gi|23463971|gb|AAN33799.1| response regulator/GGDEF domain protein [Brucella suis 1330]
 gi|161337483|gb|ABX63787.1| diguanylate cyclase (GGDEF) domain [Brucella canis ATCC 23365]
 gi|163675485|gb|ABY39595.1| diguanylate cyclase (GGDEF) domain [Brucella suis ATCC 23445]
 gi|225642501|gb|ACO02414.1| GGDEF domain protein [Brucella melitensis ATCC 23457]
 gi|255998047|gb|ACU49734.1| response regulator/GGDEF domain protein [Brucella microti CCM 4915]
 gi|260152345|gb|EEW87438.1| GGDEF domain-containing protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260154767|gb|EEW89848.1| GGDEF domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|261740073|gb|EEY27999.1| response regulator receiver modulated diguanylate cyclase [Brucella
           suis bv. 5 str. 513]
 gi|261743347|gb|EEY31273.1| response regulator receiver modulated diguanylate cyclase [Brucella
           suis bv. 3 str. 686]
 gi|263000594|gb|EEZ13284.1| response regulator receiver modulated diguanylate cyclase [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263092199|gb|EEZ16496.1| GGDEF:Response regulator receiver [Brucella melitensis bv. 2 str.
           63/9]
 gi|294819247|gb|EFG36247.1| two-component system response regulator [Brucella sp. NVSL 07-0026]
 gi|326410768|gb|ADZ67832.1| response regulator PleD [Brucella melitensis M28]
 gi|326554060|gb|ADZ88699.1| response regulator PleD [Brucella melitensis M5-90]
          Length = 461

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 81/174 (46%), Gaps = 9/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L  S  R    S  D L+GL N           ++      + LSI+  D+D+FKQ+N+ 
Sbjct: 285 LRQSMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQ 344

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD V+   S +L         + R GGEEF      +  Q A  +A  +R I+  
Sbjct: 345 YGHGAGDHVLREFSGRLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRGIVAE 404

Query: 206 SQINISSGP-SIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +  G     +T+S G+ A R   + +  +  RA  AL  AK+SGRNR+V 
Sbjct: 405 APFVLDDGKRRASLTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIVL 458


>gi|88812167|ref|ZP_01127419.1| GGDEF family protein [Nitrococcus mobilis Nb-231]
 gi|88790671|gb|EAR21786.1| GGDEF family protein [Nitrococcus mobilis Nb-231]
          Length = 300

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/198 (29%), Positives = 94/198 (47%), Gaps = 24/198 (12%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVF 133
           +L +++GS ++  +  +  I +L+ ID L+ + N   F+  +         Y   L+++ 
Sbjct: 105 ILKFLTGSNIEASY--HEEIYRLTTIDGLTQVYNKYYFLKEMARVVGRSVRYERDLALIL 162

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DIDYFK IND++GH  GD V+  ++  +           R GGEEF A     S+  A 
Sbjct: 163 CDIDYFKLINDSYGHLAGDHVLKQVAQHIKRHTHPDDIFARYGGEEFVALLPERSKSTAV 222

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAE--------------RCHKEPISTIIYR 239
           ++A  LRK +++       G SI +T+S G+A+                H      +I  
Sbjct: 223 VVAESLRKHVDSEPFEF-DGVSIPVTLSMGVADLREARRALGERGGISEHDSSCFALIKL 281

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD  LY AK+ GRN +V 
Sbjct: 282 ADDRLYWAKQIGRNTIVA 299


>gi|332295745|ref|YP_004437668.1| diguanylate cyclase with PAS/PAC and GAF sensors [Thermodesulfobium
           narugense DSM 14796]
 gi|332178848|gb|AEE14537.1| diguanylate cyclase with PAS/PAC and GAF sensors [Thermodesulfobium
           narugense DSM 14796]
          Length = 897

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 11/185 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDY 138
           S   + E       + +LS  D L+   N   F   L    E         S++  DID 
Sbjct: 716 SIRDITENKKMEEELYELSVKDSLTDSYNRRYFEKRLEEEIERTKRSNIPFSLIMLDIDD 775

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +NDN+GH +GDKV+  +   +        F+ R GGEEF      ++   A  LA +
Sbjct: 776 FKVVNDNYGHEIGDKVLINIVKLVKNRIRKTDFIARWGGEEFMILLTNTNLHFAKKLALE 835

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           L+  +    I         +T S G+      + +++I+ R D+ +Y AK +G++ V+C 
Sbjct: 836 LKGGMYKLDIPEIE----FVTASFGVTTYHESDTVNSIVKRVDKLMYAAKAAGKDCVMCD 891

Query: 259 SDIEN 263
            D++N
Sbjct: 892 FDVQN 896


>gi|315126261|ref|YP_004068264.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudoalteromonas sp. SM9913]
 gi|315014775|gb|ADT68113.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudoalteromonas sp. SM9913]
          Length = 575

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 8/190 (4%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDID 137
           L+  IS SI  +      ++  ++  D L+GL +    I  L       +KL++ + D+D
Sbjct: 127 LIHSISSSI--QRANLEKKLHDMAHYDSLTGLASRPILIDQLQQAITSEQKLAVAYLDLD 184

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS--SEQEAAIL 195
            FK IND +GH  GD V+  ++ +L         + R+GG+EF     G+  + QE   L
Sbjct: 185 NFKPINDKYGHETGDFVLKTIAQRLKSTLRKEDTLARIGGDEFIFLLRGAAHTIQEYETL 244

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
             ++   + +         S+ I++S G+A           I+ RADQ +Y AK+SG NR
Sbjct: 245 LQEVLIEVNDPIKLAEFSCSVQISVSIGVALPSDDGLTCDDILRRADQTMYQAKRSGTNR 304

Query: 255 VVCFSDIENN 264
           ++ F   E +
Sbjct: 305 ILFFDPEEES 314


>gi|254712420|ref|ZP_05174231.1| response regulator PleD [Brucella ceti M644/93/1]
 gi|254715492|ref|ZP_05177303.1| response regulator PleD [Brucella ceti M13/05/1]
 gi|261217227|ref|ZP_05931508.1| response regulator receiver modulated diguanylate cyclase [Brucella
           ceti M13/05/1]
 gi|261320098|ref|ZP_05959295.1| response regulator receiver modulated diguanylate cyclase [Brucella
           ceti M644/93/1]
 gi|260922316|gb|EEX88884.1| response regulator receiver modulated diguanylate cyclase [Brucella
           ceti M13/05/1]
 gi|261292788|gb|EEX96284.1| response regulator receiver modulated diguanylate cyclase [Brucella
           ceti M644/93/1]
          Length = 462

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 81/174 (46%), Gaps = 9/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L  S  R    S  D L+GL N           ++      + LSI+  D+D+FKQ+N+ 
Sbjct: 286 LRQSMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQ 345

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD V+   S +L         + R GGEEF      +  Q A  +A  +R I+  
Sbjct: 346 YGHGAGDHVLREFSGRLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRGIVAE 405

Query: 206 SQINISSGP-SIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +  G     +T+S G+ A R   + +  +  RA  AL  AK+SGRNR+V 
Sbjct: 406 APFVLDDGKRRASLTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIVL 459


>gi|152982708|ref|YP_001353141.1| hypothetical protein mma_1451 [Janthinobacterium sp. Marseille]
 gi|151282785|gb|ABR91195.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 528

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 8/178 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDY 138
           + + +  L +   ++S+L R D L+G LN                     L I   D+D 
Sbjct: 349 AEARIHNLELQLEQMSELVREDQLTGSLNRRGLDDVLEREIARADRRASPLCIAMLDLDD 408

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND +GH  GD+ +  L   +     T   + R GGEEF      +  +EA +    
Sbjct: 409 FKKINDKYGHMAGDEALIHLVRVIKDTLRTMDVIARFGGEEFLIVLPDTPLEEAILTITR 468

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           L++ +   QI + +   + +T SAG+A R  +E  + ++ RAD ALY AKK+G+NRV+
Sbjct: 469 LQREL-TKQIFMHNHTRLLMTFSAGVALRKEREDQAAMVKRADIALYEAKKAGKNRVI 525


>gi|149173557|ref|ZP_01852187.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Planctomyces maris DSM 8797]
 gi|148847739|gb|EDL62072.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Planctomyces maris DSM 8797]
          Length = 572

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 60/218 (27%), Positives = 103/218 (47%), Gaps = 19/218 (8%)

Query: 66  VENLSLVIISITISLLL-------GYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSA 117
            +N  L  ++ TI  +        GY++  I + E      R+  L+  D L+GL N  +
Sbjct: 90  AKNGRLYWVNTTIVPMFNDQGKIDGYLALRIDISEQKRLMQRLQHLAHHDPLTGLPNRVS 149

Query: 118 FISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
            + S+         +  +++F D D FK IND+ GH VGDK++  ++D+L         +
Sbjct: 150 ILESIQKVIDRKSGKHFALLFMDFDRFKLINDSLGHDVGDKLLEAIADRLRKTVRASDTI 209

Query: 173 --GRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
              RLGG+EF        S  +A ++ N L + +  S+  I  G +I+ + S GI    H
Sbjct: 210 QAARLGGDEFVVLLENLHSPDDAILVGNRLLETL--SRPYILGGYTIYSSASIGIVTSEH 267

Query: 230 -KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             E  S ++  AD A+Y AK + ++R + F  +  +  
Sbjct: 268 RSETASEMLSDADLAMYEAKAAKQDRPIVFDRVLRDKA 305


>gi|26988982|ref|NP_744407.1| sensory box protein [Pseudomonas putida KT2440]
 gi|24983800|gb|AAN67871.1|AE016418_11 sensory box protein [Pseudomonas putida KT2440]
          Length = 562

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 89/208 (42%), Gaps = 20/208 (9%)

Query: 70  SLVIISITISLLLGYISGSILK---------ELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           SL  +  T+  L+  ++G + K         E     + +      D L+GL N +    
Sbjct: 85  SLYWVDSTMVPLVDPLTGQVRKYVSIRFDVTEKRQLLHTLQWRVGHDVLTGLPNRAYLSD 144

Query: 121 SLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L             L++   D+D FK +ND +GH VGD ++  ++ +L  +      V 
Sbjct: 145 LLNQALAYSRCEGISLAVCMLDLDGFKAVNDGYGHAVGDLLLVEVAQRLKSILRGGDAVA 204

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERC-HKE 231
           RL G+EF        ++     A  L++++       +    ++ ++ S G+       E
Sbjct: 205 RLSGDEFVLILRDVDDEHQLHAA--LQRVLRALAAPCVVREHTLSLSASIGVTLYPQDDE 262

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
              T++  ADQA+YVAK+ GRNR   F 
Sbjct: 263 DADTLVRHADQAMYVAKQRGRNRYHLFD 290


>gi|251773407|gb|EES53956.1| diguanylate cyclase with PAS/PAC sensor [Leptospirillum
           ferrodiazotrophum]
          Length = 617

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 15/184 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYF 139
           S + +      RI   +  D L+ L N  +F+  L     +         ++   D+D F
Sbjct: 438 SDITKRKEDEERIIYQAFHDSLTDLPNRRSFMMRLDETISRTLRDPELTFALGILDLDGF 497

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND +GHP GD+++  +S +L     +  F+ R GG+EFA      +  +        
Sbjct: 498 KEVNDRYGHPAGDELLVAVSQRLSKSLRSTDFLARFGGDEFAILFDNVTADDPV-----F 552

Query: 200 RKIIENSQINIS-SGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVC 257
            +I+ + ++ +   G  + ++ S G++      P S  ++ RAD ALY  K+ GRN    
Sbjct: 553 ERIVADMRVPVVIRGHQVPLSASLGLSLCPPDSPESDHLLSRADAALYEVKRRGRNGWGI 612

Query: 258 FSDI 261
            SDI
Sbjct: 613 ASDI 616


>gi|197121880|ref|YP_002133831.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter sp. K]
 gi|196171729|gb|ACG72702.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter sp. K]
          Length = 455

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 4/166 (2%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            ++  L+ +D L+ L N      +L          S++F D+D+FK +ND  GH  G ++
Sbjct: 278 RQVEHLAYLDDLTHLYNTRYLDMALDREMQSGRPFSVLFMDLDHFKTVNDQHGHLSGSRL 337

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++  L         + R GG+E+    +G        +A  +R+ IE+ +     G 
Sbjct: 338 LVEVARVLRSCVRDEDVLVRYGGDEYVVLLVGIDSGGGLKVAERVRRAIEDHRFLSREGA 397

Query: 215 SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +T S G+A    H +  S I+  AD+A+Y  K+S RN V   S
Sbjct: 398 RVRVTASIGLASYPEHAQEKSEILDLADRAMYRGKRSSRNVVYMAS 443


>gi|254286550|ref|ZP_04961506.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|150423308|gb|EDN15253.1| GGDEF family protein [Vibrio cholerae AM-19226]
          Length = 976

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 22/228 (9%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI------------- 95
           F +   + P +     ++    ++ +++ +SL++  I     +EL++             
Sbjct: 739 FSYVFIIEPHWWQRKEVIVMAGMLFLALAVSLVMWRIRILKRRELYLVEQVALQTQKLRL 798

Query: 96  SYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
              +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIND + H
Sbjct: 799 QAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIAVLDIDHFKQINDRYSH 858

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+ I  +S +L+   G    V R GGEEF    +G   ++A      LR  IE   +
Sbjct: 859 IIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVG-DPKQAWGYFEKLRCKIEQVDL 917

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  + P +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 918 SAVA-PGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 964


>gi|153002326|ref|YP_001368007.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|217974914|ref|YP_002359665.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS223]
 gi|151366944|gb|ABS09944.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|217500049|gb|ACK48242.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS223]
          Length = 577

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 11/184 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            S+   L  S+ ++ +L+  D L+ L+N   F       I+     ++ L+++  D+D F
Sbjct: 123 SSMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNRAIARAKRCHDYLAVILLDLDDF 182

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILAND 198
           K IND  GH  GD ++  ++ +L  V      + RLGG+EF      +  +    I+AN 
Sbjct: 183 KAINDTLGHQTGDVLLLKVAARLSEVLRDGDIIARLGGDEFVVLVTDNDYKYFPMIVANR 242

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           L K+ E+          + I  S G+A         S ++  AD A+Y AKK GRN++  
Sbjct: 243 LLKVFEDE--FCLGDNDVLIGASIGVAFYNEAASNSSELMKCADIAMYRAKKMGRNQIQF 300

Query: 258 FSDI 261
           +S+ 
Sbjct: 301 YSEA 304


>gi|153001290|ref|YP_001366971.1| PAS/PAC and GAF sensor(s)-containing diguanylate
            cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|151365908|gb|ABS08908.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella baltica OS185]
          Length = 1419

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 9/185 (4%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQIND 144
            S +         + +L+  D L+GL N S    +L +   +    +++  D+D FK+IND
Sbjct: 971  SDISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLSNLVNREIAHALMVLDLDNFKRIND 1030

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKII 203
            + GH +GD ++  ++ ++  +      + RLGG+EFA     GS    +A +AN +   I
Sbjct: 1031 SLGHQIGDTLLKLVAARIKSLLPKNTSIYRLGGDEFAIVLDKGSDISASAAIANRI---I 1087

Query: 204  ENSQINIS-SGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDI 261
            E  +     S   + + +S GI      E     ++ +AD A+Y AK +G N    +S+ 
Sbjct: 1088 EGLKPAFEVSNEQLVLGLSIGIVLYPEDEQSEQALLRKADIAMYHAKSAGGNCYQFYSES 1147

Query: 262  ENNTC 266
             N   
Sbjct: 1148 LNQHA 1152


>gi|298292470|ref|YP_003694409.1| diguanylate cyclase [Starkeya novella DSM 506]
 gi|296928981|gb|ADH89790.1| diguanylate cyclase [Starkeya novella DSM 506]
          Length = 634

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 9/178 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQIND 144
            E   +  RI  L+  D L+GL N + F   L             +++  D+D FK++ND
Sbjct: 453 TERHRAEARIFHLAHHDPLTGLANRTLFSQRLQEAIARARVGLPGALLLIDLDRFKRVND 512

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKII 203
            FGHPVGD ++   +++L           RLGG+EFA    G+++ E A  L   L   +
Sbjct: 513 EFGHPVGDALLIAAAERLRGCLREGDLAARLGGDEFAVIQAGAAQPEGARALGARLVATL 572

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                    G  + +  S G A     +    ++ +AD ALY AK  GR R V F + 
Sbjct: 573 --GAPYEIDGKHLDVRASVGTAVLGPDDDTQALMRKADVALYRAKDGGRARHVLFGEE 628


>gi|296284755|ref|ZP_06862753.1| hypothetical protein CbatJ_14093 [Citromicrobium bathyomarinum
           JL354]
          Length = 560

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 108/247 (43%), Gaps = 30/247 (12%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK- 91
           +F  I    +  +A  +L      P   L   L+ N++L+I         G+     L+ 
Sbjct: 30  LFVGIGGTVMPQVARHWLDSSAAPPDTALVNALLLNIALIIF--------GWRRYVDLRN 81

Query: 92  ---ELFISYNRISQLSRIDCLSGLLNHS----AFISSLGSYNEK---LSIVFFDIDYFKQ 141
              +   +  +   LS+ID L+G LN        +++L +  +       V  D+D FK+
Sbjct: 82  EIEQRREAEEQARHLSQIDPLTGCLNRRCATEKMMNALAAIGDTQYAAGFVMIDLDGFKE 141

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL--GSSEQEAAILANDL 199
           IND  GH  GD+V+  +S +L  +        RLGG+EFA              + A ++
Sbjct: 142 INDTNGHQAGDEVLLEVSRRLKSMTPPGGDCARLGGDEFAFIMPLVKDDPDSLELWACEM 201

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIST-------IIYRADQALYVAKKSGR 252
              I    I+   G S+ +TIS GIA    +EPI         ++ RAD A+Y AKK GR
Sbjct: 202 TGNIAR-PIDTEVG-SLEVTISVGIAVHRPEEPIENLETAARKLMRRADLAMYQAKKEGR 259

Query: 253 NRVVCFS 259
           NR   F 
Sbjct: 260 NRFCWFD 266


>gi|294666401|ref|ZP_06731647.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603843|gb|EFF47248.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 507

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 11/175 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
               +++ +  D L+G+ N                     LSI F D+D FK++ND  GH
Sbjct: 320 RMRHLAEQASRDALTGVFNRHQLGTALTHEFELASRQGWPLSIAFIDLDDFKRVNDAHGH 379

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+V+   +  L  +  T   V R GGEEF      +    A ++   +      + +
Sbjct: 380 LVGDEVLRNFAQTLQRMVRTSDLVARYGGEEFLVILPNTPADAALMVIERILAETARTPM 439

Query: 209 NISSGPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRVVCFS 259
               G  +HIT SAG+A     E     I  ++  AD  LY +K  GRNRV  + 
Sbjct: 440 AQLQGGPLHITFSAGLATHGGAERQFDSIDHLLQAADSTLYRSKHRGRNRVTAYD 494


>gi|260222581|emb|CBA32284.1| Uncharacterized signaling protein CC_0091 [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 559

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 111/255 (43%), Gaps = 23/255 (9%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL------- 80
            IY+     +F A + +  ++ L+   +     LE  L+ ++ +V+++   ++       
Sbjct: 55  FIYYLAAMLLFSAFLQYATSVLLWRSDVMNSTKLE--LLRDVWVVLLASAFAVWITVSDW 112

Query: 81  --LLGYISGSILKELFISYNRISQLSRIDCLSGLLNH---SAFIS----SLGSYNEKLSI 131
             LLG +   I  E   S   ++ LS+ D L+ L N       +        +    +++
Sbjct: 113 RKLLGELHIRI-DEYRQSQAHLTYLSQHDALTELPNRSLGRQLMEAAIVRAQTSGSHVAL 171

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQ 190
           +F D+D FK IND+ GH  GD+ +  ++ +L         V R  G+EF    L     Q
Sbjct: 172 MFVDLDNFKFINDSVGHAAGDEFLQQIASRLRSAVRETDVVMRQSGDEFLVGLLDVPDIQ 231

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
            A+  AN++ + +    +    G  +  + S G+A          T++  AD A+Y AK+
Sbjct: 232 AASKAANEVLEHL--GGVYRVQGSELSSSCSIGLAVYPRDGHDFDTLLRHADLAMYQAKQ 289

Query: 250 SGRNRVVCFSDIENN 264
           +GRN    F  +  +
Sbjct: 290 AGRNTFRFFDVMMQD 304


>gi|255318504|ref|ZP_05359737.1| diguanylate cyclase [Acinetobacter radioresistens SK82]
 gi|262378732|ref|ZP_06071889.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255304496|gb|EET83680.1| diguanylate cyclase [Acinetobacter radioresistens SK82]
 gi|262300017|gb|EEY87929.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 519

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 96/239 (40%), Gaps = 18/239 (7%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYIL----VENLSLVIISITISLLL 82
           F+ Y  IF+ ++  +    + +       +  Y  E       +      I+    +LLL
Sbjct: 291 FIFYLLIFYVVWKCSFFIASPLHKLANMASSLYQPEASREIKNINPWYYEIVKFKRALLL 350

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYF 139
                S           +      D L+GL+N      S+          SI+  DID+F
Sbjct: 351 SVHHFS------KKMTEMDYFINTDPLTGLMNRRGMHLSIDQKIALKIPFSILLIDIDFF 404

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND +GH  GD V+  +++ +   F       R GGEEF       S+Q+    A   
Sbjct: 405 KRVNDTYGHAEGDLVLKNIAEMMQKNFRKDDVCCRYGGEEFIVIVPDVSQQDVYESAERF 464

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           R+ +E   I         IT+S GIA      E IS +   AD+ LY AK SGRN V  
Sbjct: 465 RREVEAQSIEKVG----SITVSIGIASWPEASEDISEVFILADKNLYEAKNSGRNCVRL 519


>gi|255318986|ref|ZP_05360211.1| diguanylate cyclase [Acinetobacter radioresistens SK82]
 gi|262378277|ref|ZP_06071434.1| signaling protein [Acinetobacter radioresistens SH164]
 gi|255304003|gb|EET83195.1| diguanylate cyclase [Acinetobacter radioresistens SK82]
 gi|262299562|gb|EEY87474.1| signaling protein [Acinetobacter radioresistens SH164]
          Length = 527

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 11/164 (6%)

Query: 99  RISQLSRI---DCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +I +++     D L+ L N      F+  +   +   SI+  DID FK++ND +GH +GD
Sbjct: 365 KIDEMNFHINSDALTQLFNRRGMEIFVKEMIDSDIHFSILLIDIDRFKRVNDTYGHDIGD 424

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  L+  +   F       R GGEEF      +++QE    A   R+I+E  +IN   
Sbjct: 425 EVLKILAKLIQENFRKEDLCCRYGGEEFIVVIPNNNKQEIYESAERFRRIVEAFEINNVG 484

Query: 213 GPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
                ITIS GIA      E  + ++  AD  LY AK +GRN++
Sbjct: 485 ----RITISIGIASWPDSAEEFAQVLKIADNNLYYAKNNGRNQI 524


>gi|229171410|ref|ZP_04298995.1| Sensory box/GGDEF [Bacillus cereus MM3]
 gi|228612114|gb|EEK69351.1| Sensory box/GGDEF [Bacillus cereus MM3]
          Length = 569

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 89/175 (50%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNEMIAGKKEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF        + E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHKQDEMRQLATSVLSCFQA-- 252

Query: 208 INISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  G  ++I+ S G+ A     + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 253 PFMLEGHEVYISASLGLCAYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 307


>gi|226357418|ref|YP_002787157.1| diguanylate-cyclase [Deinococcus deserti VCD115]
 gi|226319408|gb|ACO47403.1| putative diguanylate-cyclase [Deinococcus deserti VCD115]
          Length = 856

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 15/195 (7%)

Query: 84  YISGSILKELFISYNRI----SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
            +    L  L + ++++       ++ D L+GL N S F   L              +++
Sbjct: 403 LVRARDLAALAMRHHQLTAQLRHQAQHDALTGLPNRSLFTERLAEILEQSERSRASTALL 462

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F D+D FK +ND  GH VGD V+  ++D+L+        V R+GG+EF      + E  A
Sbjct: 463 FVDLDEFKGVNDTVGHHVGDYVLQAVADRLLGCARRGDVVARVGGDEFTLVLPFAEEPHA 522

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSG 251
             +A  +    E ++  +  G + H+  S GI+          T++  AD A+Y AK+  
Sbjct: 523 ITVARRVLN--ELTRPFVVQGRAFHLGASIGISVSPQAGRDGQTLLRHADLAMYRAKRE- 579

Query: 252 RNRVVCFSDIENNTC 266
           ++    F    N   
Sbjct: 580 KSGFAVFEAQLNQQA 594


>gi|127513133|ref|YP_001094330.1| diguanylate cyclase [Shewanella loihica PV-4]
 gi|126638428|gb|ABO24071.1| diguanylate cyclase [Shewanella loihica PV-4]
          Length = 400

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 57/195 (29%), Positives = 88/195 (45%), Gaps = 28/195 (14%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---------------------L 129
           + L +   R+ ++S  D L+GL N       +     +                     L
Sbjct: 165 QALQLENLRLQEMSHRDPLTGLKNRRFIEEMIAQDLNRVDRSYDATQLRGEGTPSKADLL 224

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID+FK IND +GH  GD+V++ +  +L  +F    +V R GGEEF   A     
Sbjct: 225 ALI-IDIDHFKPINDTYGHLAGDRVLSQVGQRLTTLFRNYDYVVRWGGEEFLVVARFIDR 283

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC------HKEPISTIIYRADQA 243
           QE   LA  +R  IE+ +I + +  +I IT S G A          +     +++ AD A
Sbjct: 284 QEINHLAEKVRHAIESMEIELDAKRNIKITASVGAAPYPFSTAQADRISWEQVVHLADMA 343

Query: 244 LYVAKKSGRNRVVCF 258
           LY AK S RN  V +
Sbjct: 344 LYQAKTSSRNTWVSY 358


>gi|264678043|ref|YP_003277950.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262208556|gb|ACY32654.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 621

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 14/185 (7%)

Query: 86  SGSILKELFISYN----RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           S    +EL          + QLS  D L+GL+N  AF             +   L+++ F
Sbjct: 436 SLQRTQELEAERETLITELRQLSHRDHLTGLMNRRAFDDQAPAQLAQAERHRWPLALMLF 495

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D+FK+IND  GH  GD+++   +            + R GGEEF A      ++ A  
Sbjct: 496 DLDHFKRINDQHGHETGDQLLQHAAQLAQAQLRRGDLLARYGGEEFIALLPDCDDKAALA 555

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGR 252
           LA  LR+ ++   ++   G  ++++ S G+A +       +  +  RAD ALY AK  GR
Sbjct: 556 LAERLRQALQQ-PLHRPDGSMLNLSASFGLAVQPAGLQSSLPELFTRADTALYAAKAKGR 614

Query: 253 NRVVC 257
           N+V  
Sbjct: 615 NQVQL 619


>gi|262165615|ref|ZP_06033352.1| GGDEF family protein [Vibrio mimicus VM223]
 gi|262025331|gb|EEY43999.1| GGDEF family protein [Vibrio mimicus VM223]
          Length = 525

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 111/225 (49%), Gaps = 17/225 (7%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE-------LFISYNRISQLSRID 107
           L P    +  ++  LSL    + ISLLLGYI+  +L+E       L      +  L+  D
Sbjct: 295 LEPLTQNDRWILFGLSL--GGVIISLLLGYITRLLLEEKIRLEVMLDERTAELRYLAEHD 352

Query: 108 CLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
            L+G+ N  +F + L S     +  ++V FDID FKQIND+ GH VGD  +  + + +  
Sbjct: 353 SLTGIYNRRSFNNLLSSMLNSGQPFTLVSFDIDCFKQINDSHGHLVGDDALVHVVNLVTQ 412

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                    R+GG+EFA  +  +  +  +     +R  +E + + I+ G S+ +T+S G 
Sbjct: 413 KLLPNDHFVRMGGDEFAILSNVAERETLSNYLESIRATVERNPLAINQG-SVALTVSIG- 470

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVVC---FSDIENNTC 266
           A        S +++  D  LY++K  GRNRV     +S  E+N+ 
Sbjct: 471 ASINEDLDESELLHSVDAQLYLSKTLGRNRVSIAEQYSKAESNSA 515


>gi|325982818|ref|YP_004295220.1| diguanylate cyclase [Nitrosomonas sp. AL212]
 gi|325532337|gb|ADZ27058.1| diguanylate cyclase [Nitrosomonas sp. AL212]
          Length = 487

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/171 (30%), Positives = 78/171 (45%), Gaps = 11/171 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +   S+ D L+G  N + F  +L         YN  L++   D+D+FK +ND +GH  GD
Sbjct: 315 LEDKSQRDGLTGAYNRTYFDETLRREFNLSTQYNLPLTVAIIDLDHFKHVNDTYGHVAGD 374

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++A +   +         + R GGEEFA    G+    A  L   L+  +        S
Sbjct: 375 SLLATVVKTIFDQIRQDDTLSRYGGEEFALILPGTPLSAARNLIARLKDSVAAISYKFDS 434

Query: 213 GPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRVVCFS 259
              IHIT S G+A              +I  AD ALY AK +GRN+++ +S
Sbjct: 435 NSIIHITASIGVASYYENAASFHDAKDLIKAADSALYAAKHAGRNQIIEWS 485


>gi|228927591|ref|ZP_04090643.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|229122073|ref|ZP_04251289.1| Sensory box/GGDEF [Bacillus cereus 95/8201]
 gi|228661416|gb|EEL17040.1| Sensory box/GGDEF [Bacillus cereus 95/8201]
 gi|228832071|gb|EEM77656.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 785

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 96/200 (48%), Gaps = 10/200 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           +++V I I       Y+    + ++    ++I+ L+  D ++ + N   F   L    E+
Sbjct: 323 VTIVPIMIEGQTFGSYVMVKDITKMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIER 382

Query: 129 -------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                    +++ D++ FK IND  GH +GD V+  ++ +        + + R+GG+EFA
Sbjct: 383 AQKTQGEFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSIPLARIGGDEFA 442

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRA 240
                 +EQ+   L  +L +I E  +  + +  S ++++S GIA         +T++  A
Sbjct: 443 VLVHNHTEQQLLDLCENLFRITE--KPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHA 500

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D A+Y AK+ G N V  + +
Sbjct: 501 DIAMYSAKEKGNNAVCMYDE 520


>gi|221069372|ref|ZP_03545477.1| diguanylate cyclase [Comamonas testosteroni KF-1]
 gi|220714395|gb|EED69763.1| diguanylate cyclase [Comamonas testosteroni KF-1]
          Length = 473

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 109/240 (45%), Gaps = 14/240 (5%)

Query: 28  MIYFSIFFSIFIATVIFIANIF--LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI 85
           +I+ ++ + IF  T+I  A     + +I L          +E LS  +    + L    +
Sbjct: 231 LIWCALSYRIFSLTLITAALCLSSIIFISLGTLEFTPAHFLEALSFRMGLCMLVLGPLAV 290

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDY 138
           +GS +    +   ++S     D L+  L   AF+              +  +I+  D+D+
Sbjct: 291 AGSHMARNEL-MQKLSHAVNHDFLTDALARGAFLKQGQRILERCRQDGQPFAILMLDLDH 349

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQIND+FGH  GD+++      L  V      VGR+GGEEFA A    +   A  +A  
Sbjct: 350 FKQINDSFGHAGGDQLLRSFCQTLTQVLRAQDIVGRMGGEEFAVALPKVNAAAAQEIAKR 409

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRV 255
           + + I   ++ +     +  T+S G+         + +  ++  ADQALY AK +GR+RV
Sbjct: 410 INRAIRELRVPMDD-QLMSATVSIGLIHTDRLQAHQSLDLLLQDADQALYEAKAAGRDRV 468


>gi|78777165|ref|YP_393480.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497705|gb|ABB44245.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurimonas denitrificans DSM 1251]
          Length = 1004

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 89/184 (48%), Gaps = 12/184 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKL--SIVFFDIDY 138
           SG  +  L      +  ++  D L+ L N +     L         +KL  ++++ D+D 
Sbjct: 435 SGEDITLLKEQQKHLEHIAHYDTLTSLPNRTLLSDRLKQAMLQTQRDKLFSAVIYLDLDG 494

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAN 197
           FK++ND +GH  GD ++  LS ++  +      + RLGG+EF        ++++   + N
Sbjct: 495 FKEVNDTYGHNHGDILLKVLSSRIKQILRDVDTIARLGGDEFVIVLYDIKNKEDCFPMLN 554

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
            +   I   +   S   ++ ++ SAG++   +++      ++ +ADQA+Y AK SG+NR 
Sbjct: 555 RILSTIA--KPVKSKEITMQVSASAGVSFYSYEDIIDADQLLRQADQAMYQAKLSGKNRF 612

Query: 256 VCFS 259
             F 
Sbjct: 613 HIFD 616


>gi|329904308|ref|ZP_08273755.1| hypothetical protein IMCC9480_1973 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548032|gb|EGF32767.1| hypothetical protein IMCC9480_1973 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 577

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 90/181 (49%), Gaps = 10/181 (5%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
              + RI  L+  D L+ L N +         IS      +K++++F D+D FK +ND+ 
Sbjct: 130 LAHHQRIEFLATHDNLTALPNRTLLGDRLKQAISQARRTKQKVAVLFIDLDGFKNVNDSL 189

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+++   + +L+        + RLGG+EF A     S  +   +AN +   + N+
Sbjct: 190 GHAVGDRILKQAAARLLRCVRDADTLARLGGDEFVAVLGNVSLPDVIRVANRIVSSMANA 249

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             +I++   ++++ S GIA         ++++  AD A+Y+AK+ GRN+   F+      
Sbjct: 250 -FSINNSK-LNLSASVGIAMFPEDGSDGASLLGVADSAMYLAKQYGRNQYQFFASEMKEQ 307

Query: 266 C 266
            
Sbjct: 308 A 308


>gi|310639898|ref|YP_003944656.1| membrane domain involved in signal transduction; diguanylate
           cyclase/phosphodiesterase domain 1; diguanylate
           cyclase/phosphodiesterase domain 2 [Paenibacillus
           polymyxa SC2]
 gi|309244848|gb|ADO54415.1| Putative membrane domain involved in signal transduction;
           Diguanylate cyclase/phosphodiesterase domain 1;
           Diguanylate cyclase/phosphodiesterase domain 2
           [Paenibacillus polymyxa SC2]
          Length = 205

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 87/174 (50%), Gaps = 5/174 (2%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--EKLSIVFFDIDYFKQINDNFGHPVG 151
            +  N + +L+  D ++GL N +A        N  E  +I++ D+D FK IND +GH +G
Sbjct: 1   MMERNLLRKLAYQDPVTGLFNRNALELFWKRSNGKEGFAIMYLDLDGFKAINDTYGHQIG 60

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DK++  +SD L+ V  +     R+GG+EF          +  +LA  L + I  S     
Sbjct: 61  DKLLRRVSDHLLQVTNSHQKAFRIGGDEFLLIMKDYDADQVTVLAELLLQKI--SVPYNI 118

Query: 212 SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            G ++ +T S GI      K+P+ +++  AD A+Y AK  GRNR   +  I   
Sbjct: 119 QGINLQVTGSIGITMHPSPKKPLPSLLKEADIAMYQAKGMGRNRYAVYQRIRQR 172


>gi|254711121|ref|ZP_05172932.1| response regulator PleD [Brucella pinnipedialis B2/94]
 gi|256029502|ref|ZP_05443116.1| response regulator PleD [Brucella pinnipedialis M292/94/1]
 gi|261318712|ref|ZP_05957909.1| response regulator receiver modulated diguanylate cyclase [Brucella
           pinnipedialis B2/94]
 gi|265986510|ref|ZP_06099067.1| response regulator receiver modulated diguanylate cyclase [Brucella
           pinnipedialis M292/94/1]
 gi|261297935|gb|EEY01432.1| response regulator receiver modulated diguanylate cyclase [Brucella
           pinnipedialis B2/94]
 gi|264658707|gb|EEZ28968.1| response regulator receiver modulated diguanylate cyclase [Brucella
           pinnipedialis M292/94/1]
          Length = 462

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 81/174 (46%), Gaps = 9/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L  S  R    S  D L+GL N           ++      + LSI+  D+D+FKQ+N+ 
Sbjct: 286 LRQSMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQ 345

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD V+   S +L         + R GGEEF      +  Q A  +A  +R I+  
Sbjct: 346 YGHGAGDHVLREFSGRLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRGIVAE 405

Query: 206 SQINISSGP-SIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +  G     +T+S G+ A R   + +  +  RA  AL  AK+SGRNR+V 
Sbjct: 406 APFVLDDGKRRASLTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIVL 459


>gi|229591547|ref|YP_002873666.1| putative sensory box GGDEF transmembrane protein [Pseudomonas
           fluorescens SBW25]
 gi|229363413|emb|CAY50587.1| putative sensory box GGDEF transmembrane protein [Pseudomonas
           fluorescens SBW25]
          Length = 521

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 18/203 (8%)

Query: 71  LVIISITISLLLGYISGSILKELFISY-------NRISQLSRIDCLSGLLNHSAFISSLG 123
           +V     ++LL+  +   ++ +   +          +  L+  D L+ + N   F + + 
Sbjct: 322 IVAFGAGLTLLMTLMVYMLITQRARALSLVDERTQDLRLLNITDHLTDVYNRRHFEALME 381

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                    +  LS++ FD+D+FK+IND  GH   D V+  L  +L         + R G
Sbjct: 382 RLLVEADAQHSPLSLIMFDVDHFKRINDLKGHQCVDSVLKSLCVRLRSAIRKTDLLCRTG 441

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236
           GEEFA    GS   +  +LA  LR ++       +      +T S G+A     E     
Sbjct: 442 GEEFALICPGSDLNDTTLLAEKLRALVSALPFEEAG----QVTCSFGVATWIPSESFDAF 497

Query: 237 IYRADQALYVAKKSGRNRVVCFS 259
           + RAD A+Y AK SGR++V    
Sbjct: 498 VRRADSAMYSAKSSGRDQVQLAD 520


>gi|228961677|ref|ZP_04123285.1| GGDEF domain protein [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229051085|ref|ZP_04194632.1| GGDEF domain protein [Bacillus cereus AH676]
 gi|229112827|ref|ZP_04242359.1| GGDEF domain protein [Bacillus cereus Rock1-15]
 gi|228670661|gb|EEL25973.1| GGDEF domain protein [Bacillus cereus Rock1-15]
 gi|228722296|gb|EEL73694.1| GGDEF domain protein [Bacillus cereus AH676]
 gi|228798027|gb|EEM45032.1| GGDEF domain protein [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 352

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 9/214 (4%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           ++  I +   Y      +  + L +IS  I+  + +IS + + +    +  + Q + ID 
Sbjct: 137 YILSILIPALYIWLIKEIHIVGLYLISSIITGYITFISANYVLQSNELFQTMKQYATIDA 196

Query: 109 LSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GL N   F   +  +       N+ L ++  DID+FK +ND +GHP GD+V+  +   
Sbjct: 197 LTGLGNVRQFDLEMNRHISNKHLKNDSLCLLLIDIDHFKHVNDTYGHPAGDEVLKQVGHI 256

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L  +   P  V R GGEEFA             +    R  +E     +  G  I IT+S
Sbjct: 257 LREMSAFPDLVFRKGGEEFALLIPRKGIAYGIHVGEQTRIAVEKHSFELLDGTKIKITVS 316

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G++E          I  AD ALY +K++GRN+V
Sbjct: 317 VGVSEYEGAS--EQFIQAADDALYYSKRNGRNKV 348


>gi|121603197|ref|YP_980526.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Polaromonas naphthalenivorans
           CJ2]
 gi|120592166|gb|ABM35605.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Polaromonas naphthalenivorans CJ2]
          Length = 836

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 95/208 (45%), Gaps = 13/208 (6%)

Query: 69  LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
           L +V +++T   L  +++ G  + +  ++ + I QL+  D L+ L N    ++ L     
Sbjct: 361 LEIVQVAVTADELTHWVAVGRDITQRKVNADAIHQLAFYDPLTTLPNRLMLLNRLEQVMA 420

Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                  + +++F D+D  K +ND  GH  GD ++  ++++L         V RLGG+EF
Sbjct: 421 QSAHPRRQGALMFIDVDKLKVLNDTLGHHKGDLLLQQVAERLAGCVEDTDMVARLGGDEF 480

Query: 181 AAAA--LGSSEQEAAILANDL-RKIIENSQINIS-SGPSIHITISAGIAE-RCHKEPIST 235
                 LG     AA  A  L  K++E  +      G   + T S G+         +S 
Sbjct: 481 VVLLENLGDDAGSAAAHARQLAEKVLEQLREPFDLGGHQHYTTSSIGVTSLNAAHGSVSE 540

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDIEN 263
           ++ +AD A+Y AK +GRN +  F     
Sbjct: 541 VLKQADLAMYQAKTTGRNALCFFDPEMQ 568


>gi|320157396|ref|YP_004189775.1| sensory box/GGDEF family protein [Vibrio vulnificus MO6-24/O]
 gi|319932708|gb|ADV87572.1| sensory box/GGDEF family protein [Vibrio vulnificus MO6-24/O]
          Length = 599

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/193 (28%), Positives = 86/193 (44%), Gaps = 13/193 (6%)

Query: 78  ISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEK 128
           + ++   IS   L E  L  +   + +LS +D L+ + N   F   L             
Sbjct: 384 VLIMARDISERYLAEQKLEAANLELEKLSFMDSLTQVSNRRRFDEQLNTLWFHHAREKLP 443

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGS 187
           L+I+  DID+FK+ ND +GH  GD+ +  ++     V   +   V R GGEEFA     +
Sbjct: 444 LTIMLCDIDFFKEFNDRYGHQAGDEALIQVATVFSQVVSRSSDCVARYGGEEFALLLPNT 503

Query: 188 SEQEAAILANDLRKIIENSQINISSGP-SIHITISAG-IAERCHKEPISTI-IYRADQAL 244
           + + A  +A  +   I  S I       +  +TIS G ++     E +  + +  AD AL
Sbjct: 504 TAEGALKVAEKIHAYIAESNIAHQGSKIAGRVTISIGLVSYIPSPEDVPDMGVALADSAL 563

Query: 245 YVAKKSGRNRVVC 257
           Y AK  GRNR   
Sbjct: 564 YQAKSDGRNRTCV 576


>gi|313109930|ref|ZP_07795858.1| hypothetical protein PA39016_002160004 [Pseudomonas aeruginosa
           39016]
 gi|310882360|gb|EFQ40954.1| hypothetical protein PA39016_002160004 [Pseudomonas aeruginosa
           39016]
          Length = 626

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 11/181 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           ++L +   ++   +  D L+GL N    +            +   ++++  D+D+FK IN
Sbjct: 436 RQLQMREAQLQYAAHHDSLTGLGNRRHLMEFAESALDDARRHGNSMALLLIDLDHFKPIN 495

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKI 202
           D  GH  GD V+  ++ +L     T   V RLGG+EFA    GS+ EQ A  +A  L + 
Sbjct: 496 DTHGHDAGDFVLQNVAQRLRHCVRTEDCVARLGGDEFAVLVGGSNAEQHARDIAERLLR- 554

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            E ++    +   + IT S G+A           +   ADQALY  K +GR       ++
Sbjct: 555 -ELAKPVEFAKQWLVITPSIGVALFPGDALQFGKLYKAADQALYRVKGAGRAGYAMVQEL 613

Query: 262 E 262
           +
Sbjct: 614 Q 614


>gi|306842502|ref|ZP_07475153.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2]
 gi|306287358|gb|EFM58838.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2]
          Length = 703

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 91/187 (48%), Gaps = 11/187 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFF 134
           L+G +    + E      R++ ++  D L+GL N + F   +GS  +        ++ + 
Sbjct: 249 LIGLV--EDITERREIEKRMAHIAMHDSLTGLPNRAYFAHHVGSLLKKGSDCDPFALFYL 306

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK +ND+  H  GD+++  ++ +L  +     F+ RLGG+EFA      +  + A+
Sbjct: 307 DIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGTLAQIAM 366

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
            A+ +    ++    +  G +  +T S GIA+   H +    ++  AD ALY +K  GR 
Sbjct: 367 FADRVLSAFQD--PFVLGGNAEFVTCSMGIAQAPLHGDNPDVLMRNADLALYASKSGGRR 424

Query: 254 RVVCFSD 260
               + D
Sbjct: 425 TFRFYQD 431


>gi|326790142|ref|YP_004307963.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium lentocellum DSM 5427]
 gi|326540906|gb|ADZ82765.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium lentocellum DSM 5427]
          Length = 949

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/193 (27%), Positives = 94/193 (48%), Gaps = 12/193 (6%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFF 134
           L+G ++   + +   +  R+ +L+  D L+G LN   F+ SL ++          +++F 
Sbjct: 501 LIGILT--DITDNKANEERVRKLAFFDVLTGCLNKQTFMESLETWLSPGEAIKDAALLFI 558

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK+IND  GH +GDK++ +++  L  +     F+ R GG+EF      +S  +   
Sbjct: 559 DLDDFKKINDTLGHEMGDKLLNYVAKVLRHIIPQDSFISRFGGDEFVIF--KTSVSDLGE 616

Query: 195 LANDLRKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
           +   +  I+   Q  I   G  IHIT S GIA           ++  AD A+Y AK +G+
Sbjct: 617 IQEMVYSILNIFQDPIRIDGKDIHITCSIGIALYPLDGTSGDILLKNADTAMYKAKDNGK 676

Query: 253 NRVVCFSDIENNT 265
           N    ++   + +
Sbjct: 677 NSYSFYAPDMSKS 689


>gi|291568365|dbj|BAI90637.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 598

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 60/276 (21%), Positives = 112/276 (40%), Gaps = 23/276 (8%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIF-------IATVIFIANIFLFYIGLTP 57
           + D     +C++   E ++    +I+ S    IF       +  V +I+  F F   L  
Sbjct: 65  MPDIDGYAVCNQLKSEPYTAEVPIIFLSALDDIFDKVKAFEVGGVDYISKPFQFQEVLIR 124

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
                 +      L +++      L        +EL I+ +++  ++  D L+ L N + 
Sbjct: 125 VKNQLTLRRTQQQLQVLNTQ----LEARVEQRTQELEIANSKLRDMAFRDDLTNLPNRAL 180

Query: 118 FISSL--------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
           F+  L          +N    ++  D D FK IN++ GH VGD+++  +S +L  +    
Sbjct: 181 FLERLADGIDVKQEHHNYNFVVLLLDCDRFKMINESLGHSVGDQLLIAISKRLKSLLKPE 240

Query: 170 MFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ER 227
             + RLGG+EFA          EA  +A  + +    S   +     + I +S GI+   
Sbjct: 241 DTLARLGGDEFAIMVNKIEDMAEAKAMAQKVLESF--SHPFVLPNQEVFINVSIGISGSH 298

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
              +    ++  AD A+Y AK  G+ +   F    +
Sbjct: 299 LDYQKPEHMLRDADTAMYRAKDLGKGQYHIFDPSMH 334


>gi|262370899|ref|ZP_06064223.1| LOW QUALITY PROTEIN: GGDEF family protein [Acinetobacter johnsonii
           SH046]
 gi|262314261|gb|EEY95304.1| LOW QUALITY PROTEIN: GGDEF family protein [Acinetobacter johnsonii
           SH046]
          Length = 531

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 93/179 (51%), Gaps = 9/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISS---LGSYNEKLS---IVFFDIDYFKQ 141
             L++      R+  ++ +D L+G+ N  A       L +   + S   ++  DID+FKQ
Sbjct: 345 QTLQQRDALEFRLKNIAHLDSLTGVANRYALNEYIKLLENQPTQFSETCLMVIDIDHFKQ 404

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH +GD+VI F++++L     T   + R GG+EF         + A  +A  +R 
Sbjct: 405 VNDVYGHLMGDQVIQFVAEKLKENIRTSDLLVRYGGDEFIVLIENVGMERALKIAEKIRS 464

Query: 202 II-ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I E   ++    P + ++IS G+A          ++ +AD+AL+ AK+ G+N+VV +S
Sbjct: 465 EIYEAKSVDNVRCPDLKVSISIGVA--IGATSWMALLEKADRALFQAKEQGKNKVVAYS 521


>gi|126725733|ref|ZP_01741575.1| sensory box protein [Rhodobacterales bacterium HTCC2150]
 gi|126704937|gb|EBA04028.1| sensory box protein [Rhodobacterales bacterium HTCC2150]
          Length = 908

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 85/181 (46%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
             + E   + + I++L+  D L+GL N           +         + ++  D+D+FK
Sbjct: 453 RDISEAKAAEDEINKLAFYDALTGLPNRRMLYGKLEDEMKRSDRSGLPVVLMLLDLDFFK 512

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
           ++ND  GH  GD+++   + ++         V RLGG+EF           +A+ +A ++
Sbjct: 513 EVNDKLGHAQGDRLLVEAARRITACVRETDTVARLGGDEFMIILSNMKDVTKASHIAENI 572

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            K +  +   +S   +  I+ S G+A   +  +    +I  ADQA+Y+AK +GRN    F
Sbjct: 573 IKSLA-APFYLSEKINF-ISGSLGVALYPNDAQNADNLIVNADQAMYMAKDAGRNGFSYF 630

Query: 259 S 259
           +
Sbjct: 631 T 631


>gi|187924609|ref|YP_001896251.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia phytofirmans PsJN]
 gi|187715803|gb|ACD17027.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia phytofirmans PsJN]
          Length = 768

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 84/194 (43%), Gaps = 15/194 (7%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----------LSIV 132
            IS + +  +  +  ++  L+  D L+GL N +     +                 ++++
Sbjct: 312 LISFTDIGPVREAQRQLKFLATRDSLTGLYNRAYLTERMRDLFTPHMSSGMGELASVAVL 371

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F D+D FK++ND  GH  GD ++  ++++L         + R+GG+EF            
Sbjct: 372 FVDLDGFKKVNDTAGHEAGDSLLCSVAERLSACIAPEDTLARVGGDEFVIVISAYENSGH 431

Query: 193 AI-LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
            I LA  +  +I        +    ++  S GI+      + ++T++  AD A+Y AK+ 
Sbjct: 432 LIGLARRVLDMIAV--PFAVADNEYYLGASIGISRFPEDGQDVATLMRNADSAMYHAKQR 489

Query: 251 GRNRVVCFSDIENN 264
           GRN    F+   N 
Sbjct: 490 GRNNFQFFTAELNQ 503


>gi|90023289|ref|YP_529116.1| hypothetical protein Sde_3649 [Saccharophagus degradans 2-40]
 gi|89952889|gb|ABD82904.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 456

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 100/232 (43%), Gaps = 27/232 (11%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS--GSILKELFISYNRISQLSRIDC 108
           +Y+ +   + L  ++     L+ +       L  +S   +   +L     +  +LS  D 
Sbjct: 221 WYLIIMSIWMLTIVVKTVRRLIYLREKNRRYLQRVSMLEADKNQLQNKAAKFEELSTTDS 280

Query: 109 LSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           L+G  N         + F          L+I+  DID+FK+IND  GH VGDKV++ L  
Sbjct: 281 LTGAYNRFGIDRIITNLFEQRA--LMLPLTIIIADIDHFKRINDTEGHAVGDKVLSKLGR 338

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG------- 213
            ++       F+GR GGEEF      +  Q   +LA  LR +IE +Q  + +        
Sbjct: 339 TILANIRENDFLGRWGGEEFIIICTHTDAQHGFLLAEKLRLLIEGTQFELENSTNSPRLN 398

Query: 214 --------PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                   P + +T S G+ E    E  +    RAD ALY AKK GRN  V 
Sbjct: 399 QQLHPQLHPQLKVTASFGVGEVQAGETFTETFNRADSALYEAKKQGRNCTVL 450


>gi|331007322|ref|ZP_08330521.1| sensory box/GGDEF family protein [gamma proteobacterium IMCC1989]
 gi|330418884|gb|EGG93351.1| sensory box/GGDEF family protein [gamma proteobacterium IMCC1989]
          Length = 703

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 26/221 (11%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
           Y+ ++P    E  ++  +S+                  +        ++   +  D L+G
Sbjct: 237 YVNISPLANEEQEVIRFVSV---------------QEDITVRRSYEEQLKNQAYYDELTG 281

Query: 112 LLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           L N +  + ++             L+++  D+D+FK +ND  GH +GD+++   + +L  
Sbjct: 282 LPNRTLIMETISHAIASSYNTSLPLALLCIDLDHFKNVNDTLGHSIGDELLVQAASRLAG 341

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAG 223
              +   +GR GG+EF         ++A   + +++ ++    +  I +    +IT+S G
Sbjct: 342 TISSVQLLGRTGGDEFFVLLPEIEGEQAIQAMVDNIMQMF--VEPFIINEYPHYITVSIG 399

Query: 224 IAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            A    H     T++  A+ A+Y AKK+GRN+   FS+  N
Sbjct: 400 AANYPEHSTDSHTLLKNAELAMYQAKKAGRNQCQLFSEAIN 440


>gi|260771158|ref|ZP_05880085.1| C-di-GMP phosphodiesterase A-related protein [Vibrio furnissii CIP
           102972]
 gi|260613755|gb|EEX38947.1| C-di-GMP phosphodiesterase A-related protein [Vibrio furnissii CIP
           102972]
 gi|315179236|gb|ADT86150.1| GGDEF domain protein [Vibrio furnissii NCTC 11218]
          Length = 685

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/250 (24%), Positives = 111/250 (44%), Gaps = 14/250 (5%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISL-L 81
           T ++ F +  ++ + T++ I       + +T        L +   NLS  +I     L  
Sbjct: 160 TRVLMFDLLRNVLLTTILLIFFYRKLSLPITTLINWVRSLPDRPHNLSPPLIHQESELSE 219

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEKLSIVF-F 134
           L     ++  E  ++  +++QL+  D L+GL N S  +        L  +++   ++F  
Sbjct: 220 LASSFHTLWHERELAEAKLNQLAYYDTLTGLANRSLLLQMLSKSIDLAQHDQHSGVLFYL 279

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND+ GH +GDK+I  ++ +L           R+GG+EF         +    
Sbjct: 280 DLDRFKTINDSLGHTIGDKLIKAIATRLQAWAKQDYIAARIGGDEFVVLIPALDSERVEN 339

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRN 253
           +A  L  +I N          ++ ++S GI+        +  ++ +AD ALY AK SGRN
Sbjct: 340 VAKQLLALISN--PYSIDDHQLYCSVSIGISMFPSAGITNIDVLRQADTALYRAKVSGRN 397

Query: 254 RVVCFSDIEN 263
           + V +     
Sbjct: 398 KYVFYEPEMQ 407


>gi|254499426|ref|ZP_05112087.1| hypothetical protein LDG_3465 [Legionella drancourtii LLAP12]
 gi|254351325|gb|EET10199.1| hypothetical protein LDG_3465 [Legionella drancourtii LLAP12]
          Length = 1066

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 26/210 (12%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           +      +++L++++    ISL   Y               +   +  D L+G  N +  
Sbjct: 608 HSFTAQHLQDLTILVSQAAISLENAY---------------LYYQATHDPLTGFANRNLL 652

Query: 119 IS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                     L    ++L+I+F D+DYFK IND  GH VGDK++ + S+Q+         
Sbjct: 653 FQIFQQSASRLSREAKQLAIIFLDLDYFKTINDTMGHEVGDKLLIYFSEQIKTCLRAGDL 712

Query: 172 VGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-H 229
             RLGG+EF        E  +  ++ + + + +      I  G +IHI+ SAGI+     
Sbjct: 713 PVRLGGDEFVILLDSLDESMQVKVIIDKIYQQLAA--PVIIQGHTIHISTSAGISLFPKD 770

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              I  ++ +AD ALY AK+ G+N+   +S
Sbjct: 771 ATDIQGLLKQADTALYRAKELGKNQYQFYS 800


>gi|167624584|ref|YP_001674878.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Shewanella halifaxensis HAW-EB4]
 gi|167354606|gb|ABZ77219.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella halifaxensis HAW-EB4]
          Length = 1428

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 89/184 (48%), Gaps = 7/184 (3%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQIND 144
            S +         + +L+  D L+ L N S  + +LG     +   +++  D+D FK+IND
Sbjct: 977  SDVSRRKQQEEELRKLTNNDLLTNLPNRSNLMVTLGNLVKRDSHHTLMVLDLDNFKKIND 1036

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKII 203
            + GH VGD+++  +S+++ V   +   + RLGG+EFA           +AI+A ++    
Sbjct: 1037 SLGHQVGDELLVQVSERIQVAVPSHTSIYRLGGDEFAILVDKNPDIGTSAIIAKNVIHAF 1096

Query: 204  ENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDIE 262
            E     ++    + + +S GI      +     ++ +AD A+Y AK +G NR   +S+  
Sbjct: 1097 E-MPFELTK-EKVVVGLSIGIVLYPEDDQNEQALLRKADIAMYHAKSAGGNRYQFYSESL 1154

Query: 263  NNTC 266
            N   
Sbjct: 1155 NKNA 1158


>gi|160876890|ref|YP_001556206.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160862412|gb|ABX50946.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|315269094|gb|ADT95947.1| diguanylate cyclase [Shewanella baltica OS678]
          Length = 302

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 79/178 (44%), Gaps = 9/178 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
            S + +      ++ QLS  D L+GL N       L         +    SI+  D+D+ 
Sbjct: 122 ASNISQRHELELQLRQLSDTDQLTGLYNRRRLERDLTVQFDTFQRHRTPTSILILDLDHL 181

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND  GH  GDK+I  +++     F       R GG+EF  A  G  + +A   A  L
Sbjct: 182 KSINDQLGHHAGDKIIIAVAETCRTQFRKTDSAYRFGGDEFVIALPGVEQSQAVKFAEYL 241

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
                ++   ++    +  T+S G+A            + RAD ALY AK++G+NRV+
Sbjct: 242 CDCFYSALQQLAVN-GLFATVSIGVASIEALDTSYEDTLKRADAALYQAKRNGKNRVI 298


>gi|22298701|ref|NP_681948.1| hypothetical protein tlr1158 [Thermosynechococcus elongatus BP-1]
 gi|22294881|dbj|BAC08710.1| tlr1158 [Thermosynechococcus elongatus BP-1]
          Length = 443

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 10/180 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           S + ++      +  L+ +D L+G  N    +S + +Y  +       L+++ FDID+FK
Sbjct: 263 SDISDMRQREQALLALAWLDPLTGAFNRRFLLSRVEAYESQAATGEALLTVMIFDIDHFK 322

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVV--FGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           +IND +GH  GD V+  L+ +   V        + R GGEEF      + E +A  +A +
Sbjct: 323 RINDTYGHDQGDVVLRTLAARAKQVLESCQDGILVRWGGEEFVLLFFVAYEDQAKAVAEE 382

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           L  ++ +  + ++   S+ +TIS G+      E  +S  I RADQALY AK  GR+R V 
Sbjct: 383 LCSVVRSQPVELTDQYSLSVTISLGVTLFRGGEQVLSDSIPRADQALYEAKHGGRDRWVW 442


>gi|127512206|ref|YP_001093403.1| diguanylate cyclase [Shewanella loihica PV-4]
 gi|126637501|gb|ABO23144.1| diguanylate cyclase [Shewanella loihica PV-4]
          Length = 593

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 97/203 (47%), Gaps = 15/203 (7%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--------SAFISSLG 123
           ++I+I  S+ L     S+    F+   +  ++S+ D L+G+LN         + F+  L 
Sbjct: 387 LMIAIGCSICLIIFGASM----FVQKRKYKRISQRDPLTGVLNRGTGQDFAENLFVDVLA 442

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            +    S+V FD+D+FK IND +GH  GD  +  + D +     +     R+GGEEFA  
Sbjct: 443 -HRSMFSVVMFDLDHFKAINDTYGHSAGDWALRRVVDAVTPSLKSRDLFVRMGGEEFALF 501

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQ 242
              + EQ A  +A   R  IE  Q        + IT S G+     ++  +  ++ R D 
Sbjct: 502 LPYTDEQAALKIAKQCRVAIEAIQTRPHYS-DLSITASFGVCTSVEEDLSLDPLMKRVDI 560

Query: 243 ALYVAKKSGRNRVVCFSDIENNT 265
           A+Y AK +GRN VV +     +T
Sbjct: 561 AMYQAKGNGRNCVVMYRPSMEST 583


>gi|332701949|ref|ZP_08422037.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552098|gb|EGJ49142.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 736

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 12/188 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFK 140
            + E   + + +  L+  D L+ L N + F+  LG+   +         S++F D+D FK
Sbjct: 286 DITEHRRADDMLRHLAFHDALTELANRALFLDRLGTAIRRGKRNPDFIFSVLFLDLDRFK 345

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            +ND+ GHP GD ++  ++ +L         + R GG+EFA    G S   E   +   +
Sbjct: 346 LVNDSLGHPAGDAMLCEIAARLTECVRDSDTLARFGGDEFAILLDGLSDPLETLKIIERI 405

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           RK +   +        +    S G+     + +    I+  AD A+Y AK++G      F
Sbjct: 406 RKALA--RPFFLDDHELFAGASIGVVLDTERYDSPEEIVRDADIAMYRAKENGNAVYEIF 463

Query: 259 SDIENNTC 266
               +   
Sbjct: 464 DSRMHEQA 471


>gi|218903664|ref|YP_002451498.1| sensory box/GGDEF family protein [Bacillus cereus AH820]
 gi|218535542|gb|ACK87940.1| sensory box/GGDEF family protein [Bacillus cereus AH820]
          Length = 828

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 96/200 (48%), Gaps = 10/200 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           +++V I I       Y+    + ++    ++I+ L+  D ++ + N   F   L    E+
Sbjct: 366 VTIVPIMIEGQTFGSYVMVKDITKMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIER 425

Query: 129 -------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                    +++ D++ FK IND  GH +GD V+  ++ +        + + R+GG+EFA
Sbjct: 426 AQKTQGEFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSIPLARIGGDEFA 485

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRA 240
                 +EQ+   L  +L +I E  +  + +  S ++++S GIA         +T++  A
Sbjct: 486 VLVHNHTEQQLLDLCENLFRITE--KPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHA 543

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D A+Y AK+ G N V  + +
Sbjct: 544 DIAMYSAKEKGNNAVCMYDE 563


>gi|75762223|ref|ZP_00742115.1| GGDEF family protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74490290|gb|EAO53614.1| GGDEF family protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 352

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/214 (27%), Positives = 99/214 (46%), Gaps = 9/214 (4%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           ++  I +   Y      +  + L +IS  I+  + +IS + + +    +  + Q + +D 
Sbjct: 137 YILSILIPSLYIWLIKDINIVGLYLISSIITGYITFISANYVLQSNELFQTMKQYATVDA 196

Query: 109 LSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GL N   F   +  +       N+ L ++  DID+FK +ND +GHP GD+V   +   
Sbjct: 197 LTGLGNVRQFDLEMNRHISNKNMKNDSLCLLLIDIDHFKYVNDTYGHPAGDEVXKQVGCI 256

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L      P    R GGEEFA             +   +R  +E+    +  G  I IT+S
Sbjct: 257 LRETSQFPDLAFRKGGEEFALLIPNKGLAYGIRMGEQIRIAVESHPFQLLDGTKIKITVS 316

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G++E   +      I  AD ALY +K++GRN+V
Sbjct: 317 VGVSEY--EGSSEQFIQAADDALYYSKRNGRNKV 348


>gi|95930085|ref|ZP_01312824.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95133779|gb|EAT15439.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 423

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/194 (31%), Positives = 87/194 (44%), Gaps = 12/194 (6%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------- 118
           +  L  V +   I  LL    G  L  L      + +LS  D L+GL N   F       
Sbjct: 228 LTALGFVAVYFMIRALLVKKDGQDLL-LEQQNRELDRLSTTDPLTGLWNRLRFNHETPRY 286

Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           I+   S  E L++   DID+FK+IND FGH +GD+V+   S  L        F+ RLGGE
Sbjct: 287 IAQAQSRKESLAMAVIDIDHFKKINDTFGHSIGDEVLKIFSAYLQEKCRKTDFLARLGGE 346

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EF       ++ E       L +      I +    ++ +T S G+A     E  S    
Sbjct: 347 EFVILTPAITKTELEHFCQRLLE----GMIVVEYPHNLKLTASVGVALYQDGEDQSLFFS 402

Query: 239 RADQALYVAKKSGR 252
           RAD+A+Y +K+ GR
Sbjct: 403 RADRAMYESKEKGR 416


>gi|327484743|gb|AEA79150.1| GGDEF family protein [Vibrio cholerae LMA3894-4]
          Length = 473

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 14/215 (6%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           F +YI +       + +    +L  ++I+  + LG +  + +        R+  ++  D 
Sbjct: 264 FQWYIIVEQKDEFNHDIWFKATLGNLAISAFVALGVLGLAQMS-FRGYQKRLEDMAVRDK 322

Query: 109 LSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+G  N   F              +  LS+   D+D+FKQ+NDN+GHP GD V+  +   
Sbjct: 323 LTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPAGDLVLQRVVAL 382

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                     + R GGEEF       ++QEA      +R  I              +T+S
Sbjct: 383 CQRHIAQVGTLCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMHA------SQPQVTVS 436

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ +    E +  +  RADQA+Y AK  GRN+VV
Sbjct: 437 VGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 471


>gi|228933822|ref|ZP_04096668.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228825894|gb|EEM71681.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 803

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 96/200 (48%), Gaps = 10/200 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           +++V I I       Y+    + ++    ++I+ L+  D ++ + N   F   L    E+
Sbjct: 341 VTIVPIMIEGQTFGSYVMVKDITKMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIER 400

Query: 129 -------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                    +++ D++ FK IND  GH +GD V+  ++ +        + + R+GG+EFA
Sbjct: 401 AQKTQGEFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSIPLARIGGDEFA 460

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRA 240
                 +EQ+   L  +L +I E  +  + +  S ++++S GIA         +T++  A
Sbjct: 461 VLVHNHTEQQLLDLCENLFRITE--KPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHA 518

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D A+Y AK+ G N V  + +
Sbjct: 519 DIAMYSAKEKGNNAVCMYDE 538


>gi|224373747|ref|YP_002608119.1| diguanylate cyclase [Nautilia profundicola AmH]
 gi|223588457|gb|ACM92193.1| diguanylate cyclase [Nautilia profundicola AmH]
          Length = 469

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 76/171 (44%), Gaps = 9/171 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L     + S  +  D L+ + N                  N ++ I+  DID FK+IND 
Sbjct: 298 LTQKVEKYSDKAYKDGLTEIFNRRFLEEKAKELFLKYKLSNTQVGIIMLDIDDFKKINDT 357

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD V+  L   +  +        R GGEEF      S+ +    +A  +RK +E 
Sbjct: 358 YGHDTGDLVLISLVSTIKQIIRKNDIFIRYGGEEFVIILPNSNIENTYKIAEKIRKEVEK 417

Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +I+I        TIS GI+E       I   I RAD  LY AK++G+NRV
Sbjct: 418 IKIHIGDKH-FSFTISIGISEIHKDDSSIYEAIKRADINLYKAKRNGKNRV 467


>gi|75906449|ref|YP_320745.1| diguanylate cyclase [Anabaena variabilis ATCC 29413]
 gi|75700174|gb|ABA19850.1| Putative diguanylate cyclase (GGDEF domain) [Anabaena variabilis
           ATCC 29413]
          Length = 332

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/208 (30%), Positives = 106/208 (50%), Gaps = 13/208 (6%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
            + L   +    +L++  +T+    G       ++L    + +S ++  D L+ L N  A
Sbjct: 114 IWQLPTEVTATHNLILGQLTV----GLRKAQKYRDLLQKNHILSAIALADSLTELNNRRA 169

Query: 118 F-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
                   I+   + N  LS+V  D+DYFK++ND +GH +GD+++  L  +L     +  
Sbjct: 170 LEWDLPRQITKARNQNLPLSLVILDVDYFKKVNDQYGHLIGDRLLQLLCTRLRHNLRSQD 229

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERC 228
              R GGEEF      ++ +EA I+A  L +I+   Q +I+S   I +TIS G+A     
Sbjct: 230 TAFRYGGEEFVVILAHTTGEEAMIVAERLNRIVGEQQFSINSKLMISVTISLGVACLGTD 289

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256
             E  ++++ RADQ L  AK SGRN+V+
Sbjct: 290 DDEQGNSLLDRADQCLLAAKASGRNQVI 317


>gi|24375904|ref|NP_719947.1| GGDEF family protein [Shewanella oneidensis MR-1]
 gi|24350880|gb|AAN57391.1|AE015875_7 GGDEF family protein [Shewanella oneidensis MR-1]
          Length = 435

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 102/237 (43%), Gaps = 13/237 (5%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LVENLSLVIISITISLLLGYIS- 86
           +  ++   +    +IF    F+             I  VE + ++   + ++LL+  +  
Sbjct: 197 VAIAMVMPLIAMVIIFAIRFFIALFAPHETQTFIAIHTVEAIPMLWFYVFLALLINIVMI 256

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
           G+ +  L    ++I  L+  D L+GL N  A    L           E  S++  D+D+F
Sbjct: 257 GNAMTRLV---SKIRVLAEKDQLTGLWNRRAMQKRLSHIHQRWQKKAEPYSVILLDLDHF 313

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND++GH VGD  +   +            + R GGEEF      +S Q A ++A+ L
Sbjct: 314 KHINDHYGHDVGDIALLSAARLFSSALREHDVLCRHGGEEFLVLLPATSSQAARVVADKL 373

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +I+  + IN      + +  S G A          ++  AD A+Y AK  GR+R+ 
Sbjct: 374 HRILRENPINWQD-KKVQLCASVGYATIYQGCQPDKLLIEADHAMYRAKSEGRDRIC 429


>gi|255307261|ref|ZP_05351432.1| putative signaling protein [Clostridium difficile ATCC 43255]
          Length = 391

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 118/287 (41%), Gaps = 35/287 (12%)

Query: 5   LKDFLSIWLCHEKNLESF-----SPHTFMIYFSIFFSI--FIATVIFIANIFLFYIGLTP 57
              F  +W C    L+       S  ++++  +  FS+  F  +VI     FLF     P
Sbjct: 107 YVTFFCLWGCVITLLDQLGGNDLSVFSYIMLAAAAFSVLKFGESVIVFGGCFLFLNLFLP 166

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELF----------ISYNRISQLSR-- 105
             G++ I     S ++ +  I+ L  ++S  + +               Y  IS ++   
Sbjct: 167 --GIQTIPGNEFSNIVNTFFITSLAIFVSTMLYRNRVFTYYDKLLISQQYEEISHINNLL 224

Query: 106 -----IDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
                 D L+ + N       L          E ++ +  DIDYFKQ NDN+GH  GD  
Sbjct: 225 NDKVMTDDLTKMNNRRYLEDILQKKLISHANQEPITGMMIDIDYFKQFNDNYGHQKGDYC 284

Query: 155 IAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  ++  ++           R GGEEF       +E +A + +  LRKIIE+        
Sbjct: 285 LQNIAKVILDFTSSENEHAIRYGGEEFFICIFNCNEADAKLKSECLRKIIESCNFERDDV 344

Query: 214 PSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCF 258
           P   +T+S G+  +   + I  +  I   D+ALY AK+ GRN V  +
Sbjct: 345 PLKCVTVSIGVYTKKIGKTITLNEFISNCDKALYTAKEQGRNCVAFY 391


>gi|254507911|ref|ZP_05120040.1| cyclic diguanylate phosphodiesterase domain protein [Vibrio
           parahaemolyticus 16]
 gi|219549147|gb|EED26143.1| cyclic diguanylate phosphodiesterase domain protein [Vibrio
           parahaemolyticus 16]
          Length = 774

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 78/187 (41%), Gaps = 11/187 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
            S ++    S   ++  ++ D L+GL N       L             + ++F D+D+F
Sbjct: 330 ASEVERRKASEEELAFQAKHDSLTGLPNRVYGSERLALELSRAERVGSNVLVMFIDLDHF 389

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           KQIND+ GH VGD+V+   +++L         + R+GG+EF            A   A  
Sbjct: 390 KQINDSMGHFVGDEVLKLAAERLQNAVRKTDLLARIGGDEFLLVIPDLQDADSAKRFATT 449

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  +   ++  +       ++ S G++        +  ++  AD A+Y  K+ GRN    
Sbjct: 450 VLSVF--NEPFVWQNHEFFLSASVGMSMYPQDGGNVEQLLACADMAMYRVKQDGRNAFCF 507

Query: 258 FSDIENN 264
           +    N 
Sbjct: 508 YDHNMNQ 514


>gi|188591141|ref|YP_001795741.1| diguanylate cyclase (ggdef domain) [Cupriavidus taiwanensis LMG
           19424]
 gi|170938035|emb|CAP63019.1| putative diguanylate cyclase (GGDEF domain) [Cupriavidus
           taiwanensis LMG 19424]
          Length = 390

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 6/161 (3%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +      D L+ L    +  +           EKLS++  D+DYFK INDN+GH  GD V
Sbjct: 219 LRHERDTDPLTQLHTRRSLEALAARQIPPRPGEKLSVLLCDLDYFKFINDNYGHSAGDAV 278

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +   +           RLGGEEF      +  + A  LA  LR+ +E + +++  G 
Sbjct: 279 LTQVGRIIAAGIRRRDIAARLGGEEFVVLLPDTPHEAALQLAERLRQTLEQTSMDVLPGM 338

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             ++T S G+A     E +  ++ RAD  LY AK +GRN V
Sbjct: 339 G-NVTASFGVATLRPGEDLEALLMRADNVLYAAKNNGRNCV 378


>gi|330504379|ref|YP_004381248.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328918665|gb|AEB59496.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 349

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/200 (29%), Positives = 101/200 (50%), Gaps = 9/200 (4%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           L++N+ ++      SL +   +    +   ++  R+++ +  D L+GL N          
Sbjct: 138 LLQNVEIIANLGLASLAVMIFAHIYERSRILNEKRLTEQATTDALTGLPNRLKLAEVFER 197

Query: 125 Y-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                      LS+VF DID+FKQIND FGH +GD+ +A  +  L           RLGG
Sbjct: 198 ERAHALRNGTSLSLVFLDIDHFKQINDRFGHEIGDRALAHFATVLAQRLRINDLFCRLGG 257

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTI 236
           EEFA    GS+ ++A  +A  LR+ +  + +      ++ +T+SAG+A      + +  +
Sbjct: 258 EEFAVLLPGSTAEQARDIAESLRERLAAAPLAFDD-IALPMTLSAGVASFKADGQSLHEL 316

Query: 237 IYRADQALYVAKKSGRNRVV 256
           +  AD+  Y AK++GRNRV+
Sbjct: 317 MLAADRRTYAAKRAGRNRVI 336


>gi|228951120|ref|ZP_04113236.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|229068313|ref|ZP_04201616.1| Sensory box/GGDEF [Bacillus cereus F65185]
 gi|229077940|ref|ZP_04210550.1| Sensory box/GGDEF [Bacillus cereus Rock4-2]
 gi|229177154|ref|ZP_04304543.1| Sensory box/GGDEF [Bacillus cereus 172560W]
 gi|228606335|gb|EEK63767.1| Sensory box/GGDEF [Bacillus cereus 172560W]
 gi|228705398|gb|EEL57774.1| Sensory box/GGDEF [Bacillus cereus Rock4-2]
 gi|228714774|gb|EEL66646.1| Sensory box/GGDEF [Bacillus cereus F65185]
 gi|228808530|gb|EEM55033.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 569

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 88/175 (50%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF        + +   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMRQLATSVLSCFQA-- 252

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             I  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 253 PFILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 307


>gi|328543408|ref|YP_004303517.1| Sensory box/response regulator [polymorphum gilvum SL003B-26A1]
 gi|326413153|gb|ADZ70216.1| Sensory box/response regulator [Polymorphum gilvum SL003B-26A1]
          Length = 443

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 10/186 (5%)

Query: 81  LLGYISGSIL--KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           L+  I+G++L   E       + + +  D L+G  N   F                 LS+
Sbjct: 257 LVNGIAGAMLDITERKRLEEELKRAADRDPLTGAFNRRKFFDLAQDAERCAQQAGTPLSV 316

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  D+D+FK  ND +GH  GD  +  L  +L      P    R GGEEF          E
Sbjct: 317 LVIDVDHFKAFNDRYGHACGDAALCHLVKKLGGELAEPAVFARAGGEEFFVLLPEHGLGE 376

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A   A  +R  +   + +   G    + +S G++     E +   + RAD ALY AK+SG
Sbjct: 377 AVQTAERIRHSVLTDRFSF-GGQDFDLCVSIGVSVLRSGESLDETLLRADSALYKAKESG 435

Query: 252 RNRVVC 257
           RN+VV 
Sbjct: 436 RNQVVL 441


>gi|325474242|gb|EGC77430.1| GGDEF domain-containing protein [Treponema denticola F0402]
          Length = 987

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 66/213 (30%), Positives = 103/213 (48%), Gaps = 16/213 (7%)

Query: 63  YILVENLSLVIISITISLLLGY-ISGSILKE----LFISYNRISQLSRIDCLSGLLNHSA 117
           YIL+    L  ++  I+ L  Y I+   L++    L  +  +++ LS +D L+G+ N   
Sbjct: 776 YILIFA-GLTFLACRINRLFQYKIANKKLQQEQKDLISANKQLTVLSTVDELTGVGNRRQ 834

Query: 118 FI---SSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
                  L        + +S++  DID FKQ ND +GH  GD V+  ++  L        
Sbjct: 835 LDTVGKDLWRRGLDNKQPISLIMIDIDLFKQYNDLYGHQAGDNVLRTVAQTLQKKLRAKY 894

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AER 227
            FVGR GGEEF      SS  E   +A  LR  I+N  I  S+  +  +TIS G   +  
Sbjct: 895 DFVGRYGGEEFLVLLYNSSASETMKIAEKLRIEIKNLNIEHSAEKNKILTISLGAYTSVP 954

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            ++    T++  AD ALY AK+SGR+    +++
Sbjct: 955 SNELSYETMLSFADSALYKAKESGRDICKMYTE 987


>gi|148257924|ref|YP_001242509.1| putative diguanylate cyclase [Bradyrhizobium sp. BTAi1]
 gi|146410097|gb|ABQ38603.1| putative diguanylate cyclase (GGDEF) [Bradyrhizobium sp. BTAi1]
          Length = 377

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/263 (24%), Positives = 116/263 (44%), Gaps = 13/263 (4%)

Query: 7   DFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILV 66
           D   IW+C   ++         +  S +  +  + V+ I  +    +   P + +   + 
Sbjct: 109 DGPGIWMCFGLSMSFCVGIVSRV--SPWIVMSSSAVLLIPTVIACVLQPEPVFRMGAAM- 165

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN 126
               LV+  IT+     Y   +   E   +   + + +  D L+GL N +AFI++L   +
Sbjct: 166 ----LVLFWITLRG-TSYRLTAAFTERIEAQQALRRQAHQDFLTGLPNRAAFIAALRGLD 220

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
              +I+  D+D FK IND FGH  GD+++  +  +L    G      R GG+EF      
Sbjct: 221 GPAAIIAIDLDGFKSINDAFGHQAGDELLCQVGARLRQCLGDSGLAARFGGDEFMLLLPV 280

Query: 187 SSEQEAAILANDLRKII--ENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQ 242
           ++ Q     A  L + +    +   + +G  + I  SAGI  AE    E    +I +AD+
Sbjct: 281 AAAQPGRDAAGALARRVVSSLADPFVLAGTRVQIGASAGILLAEHRTAET-EALIDQADR 339

Query: 243 ALYVAKKSGRNRVVCFSDIENNT 265
           ALY AK++G ++     +   +T
Sbjct: 340 ALYAAKRAGGHQWRWADEEPADT 362


>gi|94500919|ref|ZP_01307444.1| hypothetical protein RED65_13812 [Oceanobacter sp. RED65]
 gi|94426859|gb|EAT11842.1| hypothetical protein RED65_13812 [Oceanobacter sp. RED65]
          Length = 664

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           + + +     NR+ Q++  D L+GL N + F       IS     N+K++++F D+D FK
Sbjct: 481 TDISDRKALENRLQQMAHHDALTGLANRTLFENQLNQAISRADRQNKKVALLFIDLDRFK 540

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            IND +GH +GDK++  ++++L         V R+GG+EF       S+      +A  +
Sbjct: 541 PINDEYGHEMGDKLLRIVAERLESRTREHDTVARIGGDEFVMIIEDISDMNSIESVAQQV 600

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             ++      +  G  I +  S GI+    H      +   AD A+Y AK     R   F
Sbjct: 601 VSLL--CSPIVIDGIEISVGCSIGISLYPDHGTSSIELTRSADIAMYAAKSQSEKRFYIF 658

Query: 259 S 259
           +
Sbjct: 659 T 659


>gi|74317429|ref|YP_315169.1| diguanylate cyclase [Thiobacillus denitrificans ATCC 25259]
 gi|74056924|gb|AAZ97364.1| Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           domain [Thiobacillus denitrificans ATCC 25259]
          Length = 656

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 15/190 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E   +   I  L+  D L+GL N    +  L              +++F D+D FK 
Sbjct: 464 DITERKAAEIMIRDLAFNDTLTGLPNRRLLLDRLEQQLAASGRAGRHGALLFIDMDNFKT 523

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILANDL 199
           +ND  GH  GD+V+  ++ +L+        V RLGG+EF      LG++ + A   A +L
Sbjct: 524 VNDTLGHAAGDQVLVEVAARLLASVRESDTVARLGGDEFVVVIGNLGNTAEAAKAEAAEL 583

Query: 200 --RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
             + +++ SQ         + T S GI   C H      ++ RADQA+Y AK +GR++V 
Sbjct: 584 GDKILLKLSQPYRLGAHLHNSTPSIGITTFCGHHVSAGQLLRRADQAMYRAKSAGRHQVK 643

Query: 257 CFSDIENNTC 266
            +   E +T 
Sbjct: 644 FY---EEDTA 650


>gi|71737249|ref|YP_275815.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557802|gb|AAZ37013.1| GGDEF domain protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320323358|gb|EFW79446.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327555|gb|EFW83567.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330876550|gb|EGH10699.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 308

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 8/170 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y   +Q +  D L+   N  A    L         + + LS++  DID+FK++ND +GH 
Sbjct: 140 YRIATQTALRDPLTSTGNRIAMDQGLAREIEISRRHKQPLSLLMLDIDHFKKVNDEYGHH 199

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  L         V R GGEEF      +    A ++   LR+ + N +  
Sbjct: 200 TGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGASSAELIGERLRQAVRNLEFR 259

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               P++ +T+S G +     E   +++ RAD ALYVAK+ GRNR+   S
Sbjct: 260 ELD-PALTMTVSLGCSTLLPTETADSLLRRADNALYVAKREGRNRLAMAS 308


>gi|85711558|ref|ZP_01042616.1| Intracellular signaling protein (GAF,GGDEF domains) [Idiomarina
           baltica OS145]
 gi|85694710|gb|EAQ32650.1| Intracellular signaling protein (GAF,GGDEF domains) [Idiomarina
           baltica OS145]
          Length = 362

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 18/211 (8%)

Query: 66  VENLSLVIISITISLLLGYISGSIL---KELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +++LSL+   I  ++       ++L   + L ++  +++Q + ID L+G+ N  A    L
Sbjct: 152 IQHLSLIADMIANTIERERTHAALLETKRALELANQQLTQQANIDGLTGVANRRALDERL 211

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGR 174
            +   +       ++++  DID FK  ND+FGH  GD  +  +S  L   V     FV R
Sbjct: 212 ATEIRRAKRQQTGIAMLLLDIDDFKAYNDHFGHLAGDDALKAVSQSLAQLVKRGTDFVAR 271

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI-TISAG------IAER 227
            GGEEFA     ++      +AN++ + I    I         I T+S G      IA+ 
Sbjct: 272 YGGEEFAILMSSANASSVLKMANNISEQISRLAITHPKSQCADILTVSIGGYYEPPIADS 331

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +    +I  AD ALY AK +GRN +  +
Sbjct: 332 ELVKTSKRLIKNADTALYRAKLAGRNCIRFY 362


>gi|322420346|ref|YP_004199569.1| PAS/PAC sensor-containing diguanylate cyclase [Geobacter sp. M18]
 gi|320126733|gb|ADW14293.1| diguanylate cyclase with PAS/PAC sensor [Geobacter sp. M18]
          Length = 300

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 10/165 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISS--------LGSYNEKLSIVFFDIDYFKQINDNFGHP 149
             + +L+ +D L+ L N   FI          +  YN    I+F D+D+FK++ND +GH 
Sbjct: 134 KELEKLALLDGLTHLANR-VFIEREIQNRFYEMRRYNVPFGILFIDVDHFKKVNDRYGHD 192

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+V+ F+++  V         GR GGEEF         ++   L N LR +IE S + 
Sbjct: 193 VGDRVLKFVANAFVTNARPFDVYGRWGGEEFIGVMRNIDIEDLEHLGNRLRLLIEKSYLT 252

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
                 + +T+S G       +   +II RAD  LY +K  GRNR
Sbjct: 253 HGDEI-VSVTVSIGATVAQPGDTTDSIIKRADLLLYQSKAGGRNR 296


>gi|229147958|ref|ZP_04276299.1| GGDEF domain protein [Bacillus cereus BDRD-ST24]
 gi|296505836|ref|YP_003667536.1| GGDEF family protein [Bacillus thuringiensis BMB171]
 gi|228635608|gb|EEK92097.1| GGDEF domain protein [Bacillus cereus BDRD-ST24]
 gi|296326888|gb|ADH09816.1| GGDEF family protein [Bacillus thuringiensis BMB171]
          Length = 352

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 9/214 (4%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           ++  I +   Y      +  + L +IS  I+  + +IS + + +    +  + Q + ID 
Sbjct: 137 YILSILIPALYIWLIKEIHIVGLYLISSIITGYITFISANYVLQSNELFQTMKQYATIDA 196

Query: 109 LSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GL N   F   +  +       N+ L ++  DID+FK +ND +GHP GD+V+  +   
Sbjct: 197 LTGLGNVRQFDLEMNRHISNKHLKNDSLCLLLIDIDHFKHVNDTYGHPAGDEVLKQVGHI 256

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L  +   P  V R GGEEFA             +    R  +E     +  G  I IT+S
Sbjct: 257 LREMSAFPDLVFRKGGEEFALLIPRKEMAYGIHVGEQTRIAVEKHSFELLDGTKIKITVS 316

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            G++E          I  AD ALY +K++GRN+V
Sbjct: 317 VGVSEYEGAS--EQFIQAADDALYYSKRNGRNKV 348


>gi|332995163|gb|AEF05218.1| Intracellular signaling protein [Alteromonas sp. SN2]
          Length = 866

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 12/187 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK-LSIVFFDIDYF 139
             ++E      ++   +  D L+ L N S F S L         Y E   +++F D+D F
Sbjct: 427 QQIEERKEIELKLIHDAHHDSLTDLPNRSMFTSRLELAVASKQRYTENYFAVLFIDLDRF 486

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K IND  GH  GD+ +  ++ ++ +       + RLGG+EF           +   +A+ 
Sbjct: 487 KVINDTLGHHAGDEFLVEVARRIALCIRGHDLLARLGGDEFVVLLDNFEDLTDVQEVASR 546

Query: 199 LRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   I  S+  +  G  ++   S GIA    +      ++  AD A+Y AK  GR R V 
Sbjct: 547 IINSI--SEPFLLDGREMYSGASIGIANLESYYRSADEVLRDADAAMYQAKTLGRGRFVM 604

Query: 258 FSDIENN 264
           F     +
Sbjct: 605 FDKSMRD 611


>gi|323488193|ref|ZP_08093444.1| response regulator diguanylate cyclase/phosphodiesterase
           [Planococcus donghaensis MPA1U2]
 gi|323398197|gb|EGA90992.1| response regulator diguanylate cyclase/phosphodiesterase
           [Planococcus donghaensis MPA1U2]
          Length = 536

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 60/191 (31%), Positives = 94/191 (49%), Gaps = 14/191 (7%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEK 128
           + ++L + Y+   +  +  I    +      D L+G  N   F   L           + 
Sbjct: 214 LNMALFVPYVLNRLRLQKMILQETL-----YDELTGAGNRKYFNDVLSQMTTLSEKSKKT 268

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            ++V FD+D+FK++NDN+GHP+GD+V+   S  L+       +  R GGEEFA     ++
Sbjct: 269 FTLVLFDLDHFKKVNDNYGHPIGDEVLQAFSQLLLKKKRDSDYFFRYGGEEFALILPDTA 328

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
            + A       R    N      S  S H+T SAGI+E   K+   T++ +ADQALY AK
Sbjct: 329 AETAISFVEQTRLDFANIAFTDQSNNSFHVTFSAGISEYRQKQD--TLVTKADQALYQAK 386

Query: 249 KSGRNRVVCFS 259
           K+GRN+ + F 
Sbjct: 387 KNGRNQTMMFE 397


>gi|257485856|ref|ZP_05639897.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|298488009|ref|ZP_07006046.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298157288|gb|EFH98371.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|331012942|gb|EGH92998.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 308

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 8/170 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y   +Q +  D L+   N  A    L         + + LS++  DID+FK++ND +GH 
Sbjct: 140 YRIATQTALRDPLTSTGNRIAMDQGLAREIEISRRHKQPLSLLMLDIDHFKKVNDEYGHH 199

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  L         V R GGEEF      +    A ++   LR+ + N +  
Sbjct: 200 TGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGASSAELIGERLRQAVRNLEFR 259

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               P++ +T+S G +     E   +++ RAD ALYVAK+ GRNR+   S
Sbjct: 260 ELD-PALTMTVSLGCSTLLPAETADSLLRRADNALYVAKREGRNRLAMAS 308


>gi|114562515|ref|YP_750028.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114333808|gb|ABI71190.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 635

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/173 (31%), Positives = 87/173 (50%), Gaps = 9/173 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSA-FIS------SLGSYNEKLSIVFFDIDYFKQINDN 145
           L+ S  +  + S+ D L+G+ N    F            +N  L+++ FDID FK IND+
Sbjct: 461 LWQSRRQFKRRSQTDYLTGIANRRHTFEQGKKRFYQAKKHNRSLAVIMFDIDNFKAINDH 520

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH +GD  I     +          +GR+GGEEF      + + +A  +A  LR  IE+
Sbjct: 521 YGHDIGDLAIKACGRRARNWLKKNDILGRIGGEEFLIILPDTEQAQAVEIAERLRTSIES 580

Query: 206 SQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           +Q  + +   ++ TIS  +A    +   +  II +AD  LY AK +GRN+VV 
Sbjct: 581 NQF-VFNDVKMNFTISVSVAMLTPQTHELVDIIKQADLGLYQAKDNGRNQVVV 632


>gi|90413155|ref|ZP_01221151.1| hypothetical sensory box/GGDEF family protein [Photobacterium
           profundum 3TCK]
 gi|90325846|gb|EAS42298.1| hypothetical sensory box/GGDEF family protein [Photobacterium
           profundum 3TCK]
          Length = 608

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/198 (26%), Positives = 89/198 (44%), Gaps = 18/198 (9%)

Query: 84  YISGSILKELFISYNRI-------SQLSRIDCLSGLLNHSAFISSLG-------SYNEKL 129
            +    + E   +  ++        +LS ID L+ + N  +F   L           + L
Sbjct: 410 LVMARDVTERKATEQQLADAIMDLQELSFIDSLTKVANRRSFDEQLRKLWHGHVREQQPL 469

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSS 188
           +++  DIDYFK  NDN+GH  GD  +  ++  L   V      V R GGEEFA     + 
Sbjct: 470 TLILCDIDYFKAFNDNYGHQQGDVALQEVAKVLRNVVQRGTDEVARYGGEEFAFLLPNTD 529

Query: 189 EQEAAILANDLRKIIENSQINI-SSGPSIHITISAGIAE--RCHKEPISTIIYRADQALY 245
            +   I+A ++ + + +  +    S  +  +T+S GIA       +    ++  AD ALY
Sbjct: 530 LKGGEIVAANIHQELASKGLTHGYSNVANRLTVSLGIASVIPLPSQDYGDLVGMADVALY 589

Query: 246 VAKKSGRNRVVCFSDIEN 263
            AK +GRN  +  SD ++
Sbjct: 590 KAKAAGRNCSMSISDSDD 607


>gi|307825254|ref|ZP_07655474.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
 gi|307733710|gb|EFO04567.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
          Length = 369

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 83/179 (46%), Gaps = 16/179 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           E  +    I ++S ID L+G+ N       +           E LS  FFDID+FK +ND
Sbjct: 180 ENNLHVEEIKRISYIDVLTGVNNRRFLEQRIGEELKRSQRNAEPLSCQFFDIDFFKPVND 239

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD V++ ++  +           R GGEEF A    + E +A   A  +RK I+
Sbjct: 240 KHGHQGGDLVLSLVAATIKHQLRDNDVFVRYGGEEFVALLSNTDEAKALETAERVRKAIQ 299

Query: 205 NSQINISSGPSIHITISAGIAERCHKEP--------ISTIIYRADQALYVAKKSGRNRV 255
              I ++   S+ +T+S G++                + ++  AD ALY AK +GRNRV
Sbjct: 300 TLVIAVND-ISVSVTVSIGVSTYVPDGTSISIDGEIATRLVKSADSALYRAKHNGRNRV 357


>gi|284053706|ref|ZP_06383916.1| diguanylate cyclase [Arthrospira platensis str. Paraca]
          Length = 354

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 71/260 (27%), Positives = 110/260 (42%), Gaps = 21/260 (8%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI----LVEN 68
           LC +  +    P    I  +I  S    TV  IA   L  +GL    G + I    L   
Sbjct: 92  LCEQLAILKEQPELLQILQAIVMSNEGITVEPIAAYKLESLGLVKLEGNQAIASCQLYRQ 151

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
               +    I     +   S L EL     ++ +L+ ID L+ + N     S L    +K
Sbjct: 152 YFKYLHEKGI-----FNQYSRLHELESINQQLEKLANIDDLTQVPNRRFLFSYLEKQWQK 206

Query: 129 -------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEF 180
                  +S++  DID FK  ND +GH  GD+ +  ++  L    +     V R GGEE 
Sbjct: 207 HSQRGEIISLILCDIDCFKLYNDTYGHIAGDQCLQKVAKVLESSLYRPTDIVARYGGEEL 266

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSG--PSIHITISAGIAERCHKEPIST--I 236
           A     ++  +A  LA  +RK I+  +I           IT+S G+A    +  I+   +
Sbjct: 267 AIILPETTSTQALNLAQIIRKNIKLLKIVHEKSLCADKIITLSMGVASIIPQANINHFYL 326

Query: 237 IYRADQALYVAKKSGRNRVV 256
           +  AD+ALY +K  GR+R+ 
Sbjct: 327 MQAADEALYQSKNKGRDRIT 346


>gi|225851296|ref|YP_002731530.1| diguanylate cyclase with PAS/PAC sensor [Persephonella marina
           EX-H1]
 gi|225646109|gb|ACO04295.1| diguanylate cyclase with PAS/PAC sensor [Persephonella marina
           EX-H1]
          Length = 427

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 123/265 (46%), Gaps = 31/265 (11%)

Query: 22  FSPHTFMIYFSIFFS---IFIATVIFIANIFLFYIG-LTPFYGLEYILVENLSLVIISIT 77
           ++    +++F+  FS   +  A V  I+ +  + I  +T     ++IL+ N   ++ +  
Sbjct: 160 YAGLLLVVFFAYTFSSIRLLYAVVPSISVVIAYLIADITYIKTEKFILINNSFFLVSANV 219

Query: 78  ISLLLGYISGSILKELFIS--------------YNRISQLSRIDCLSGLLNHSAFISSLG 123
           + +  GY+     ++ F+                 ++ +++  D L+ + N   F  ++ 
Sbjct: 220 MGIFAGYMLEYFFRKNFLQSFLIFLDKKKTEYLNRKLYEMTITDELTKVANRRFFQEAVE 279

Query: 124 -------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRL 175
                       +S++  D+D+FK+ ND+FGH  GD+ +  +++ L      +   V R 
Sbjct: 280 KELKRAYRERYPVSLLIVDVDHFKEYNDSFGHTAGDRCLCSVAEILKKYRKRSYDLVARY 339

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE----RCHKE 231
           GG+EF      +SE  A  +A  +R  +E+  I     P   +T+S G+A     R    
Sbjct: 340 GGDEFIVVLPKASEDYAMNVAQMIRSDVEDLCIKHIE-PFNRVTVSIGVAVLNGKRIKGV 398

Query: 232 PISTIIYRADQALYVAKKSGRNRVV 256
            +  +I  AD+ALY+AKK GRNRVV
Sbjct: 399 TVKNLINTADKALYIAKKEGRNRVV 423


>gi|209515922|ref|ZP_03264783.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160]
 gi|209503580|gb|EEA03575.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160]
          Length = 689

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 10/189 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           +G I   L  S  R+   ++ D L+ L N       L        +  + +S++F D+D 
Sbjct: 231 NGRIGSHLRRSLRRLEHQAKYDALTDLPNRVLLDERLSESLVRAAATGQNVSVLFLDLDR 290

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND+ GH +GD ++  ++ +L  +     FV R GG+EF   A  +  +E   + + 
Sbjct: 291 FKDVNDSLGHRIGDLLLKAVARRLQRLLDATDFVARYGGDEFVIVAERADARELTEMLDR 350

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII-YRADQALYVAKKSGRNRVVC 257
           L +  E S+        +++  S G++          ++   AD ALYVAK  GRN    
Sbjct: 351 LIR--EMSEPYSIGEHELYLEASIGVSTFPQDGAKPELLTRNADAALYVAKSRGRNGYQF 408

Query: 258 FSDIENNTC 266
           +    +   
Sbjct: 409 YEPELSRAA 417


>gi|197248127|ref|YP_002146327.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197211830|gb|ACH49227.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 663

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KINDTYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIILAAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSESLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 394 VFSPEMNQ 401


>gi|125972666|ref|YP_001036576.1| metal dependent phosphohydrolase [Clostridium thermocellum ATCC
           27405]
 gi|256004752|ref|ZP_05429728.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Clostridium thermocellum DSM 2360]
 gi|281416855|ref|ZP_06247875.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Clostridium thermocellum JW20]
 gi|125712891|gb|ABN51383.1| metal dependent phosphohydrolase [Clostridium thermocellum ATCC
           27405]
 gi|255991345|gb|EEU01451.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Clostridium thermocellum DSM 2360]
 gi|281408257|gb|EFB38515.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Clostridium thermocellum JW20]
 gi|316941098|gb|ADU75132.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Clostridium thermocellum DSM 1313]
          Length = 545

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 16/208 (7%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           L+ NLS   +++ I   +  I     ++     NR+  L+ +D ++G+ NH  F + LG 
Sbjct: 131 LLLNLSAARVAVMI---VSIIVAYSYEQERKYINRLEWLACVDGVTGVYNHRYFQTRLGE 187

Query: 125 YNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
             EK       L++V  D+D FK+ ND  GH  GD+++   ++           V R GG
Sbjct: 188 EIEKANLRNGSLALVMIDVDNFKKYNDTHGHIAGDRLLTKTAEIFKASARQEDIVCRYGG 247

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH---ITISAGIAERCH-KEPI 233
           +EF      +  +    +   +RK  E S    +    IH   I++S G +         
Sbjct: 248 DEFVILMPDADSKSIISMIQKIRK--EFSDFLDTEEFRIHRNEISLSVGYSIYPELARNK 305

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDI 261
             +I +AD ALY AK  GRN V  + D+
Sbjct: 306 DDLIMQADSALYQAKNMGRNNVRIYRDV 333


>gi|307720979|ref|YP_003892119.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
 gi|306979072|gb|ADN09107.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
          Length = 252

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/193 (31%), Positives = 90/193 (46%), Gaps = 17/193 (8%)

Query: 87  GSILKELFISYN-----RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFF 134
           G  + E+ + Y+     +  Q++  D L+ L N   F       I         L+ +  
Sbjct: 56  GQQIGEVIVRYDITEKKKFQQMAITDPLTNLYNRRYFNKILIREIKRSQRDKTHLAFMMI 115

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           DIDYFK+ ND++GH  GD V+  +++ L         FV RLGGEEFA       E++A 
Sbjct: 116 DIDYFKKYNDSYGHKAGDNVLVAVANTLKNSSKRASDFVFRLGGEEFAILFTTEDEKKAF 175

Query: 194 ILANDLRKIIENSQINISSGP-SIHITISAG-IAERCHKEPIST--IIYRADQALYVAKK 249
                ++K IE  QI  S+   S +IT+S G +      E +        AD ALY AK 
Sbjct: 176 AFTELVKKNIEKLQIPHSNSQVSKYITVSIGLLVVDFKNEMVDENGFYTMADDALYEAKA 235

Query: 250 SGRNRVVCFSDIE 262
           +GRN+V    + E
Sbjct: 236 AGRNQVTMHKNEE 248


>gi|296102115|ref|YP_003612261.1| RNase II stability modulator [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295056574|gb|ADF61312.1| RNase II stability modulator [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 663

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 8/185 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNE-KLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A       ++ S  E ++ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRVLANTDTITGLPNRNAIHELISDAIDSRGETQVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  ++  ++        + RLGG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHMFGDQLLQAVALAILSCLEEGQVLARLGGDEFIVMATNTSQGSLEAMASRIL 338

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +   Q        I+   S GIA    H     ++I  AD A+Y AK++GR +   FS
Sbjct: 339 TRLR--QPFRIGLIEIYTGCSLGIALAPQHGNDRESVIRNADTAMYTAKENGRGKFCVFS 396

Query: 260 DIENN 264
              N 
Sbjct: 397 PEMNQ 401


>gi|229188834|ref|ZP_04315868.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876]
 gi|228594647|gb|EEK52432.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876]
          Length = 569

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 88/175 (50%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF        + +   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMRQLATSVLSCFQA-- 252

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             I  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 253 PFILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 307


>gi|254474073|ref|ZP_05087465.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor
           [Pseudovibrio sp. JE062]
 gi|211956769|gb|EEA91977.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor
           [Pseudovibrio sp. JE062]
          Length = 728

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 11/187 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           + + + +   +   +  ++  D L+GL N +     +              ++ F D+D 
Sbjct: 265 TATNISDRKRAEAHLLHIAHHDALTGLPNRTMLGERIDEEIFQCRNSGRSFALHFIDLDR 324

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK IND  GH  GD+++  L+++L+        V RLGG+EFA       S +EA   A 
Sbjct: 325 FKSINDALGHRTGDRLLEVLAERLLRCVDGSDLVARLGGDEFAILQTDLKSSEEAMRFAQ 384

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            L  ++E  +    SG  +  + S GI +          ++  AD A+Y +K  G N   
Sbjct: 385 HLVSVVE--EPFHISGKELQTSASVGITKYPEDGLNSEELLRCADMAMYQSKADGGNTFH 442

Query: 257 CFSDIEN 263
            FS   +
Sbjct: 443 LFSTKMD 449


>gi|77918291|ref|YP_356106.1| sensory box/GGDEF family protein [Pelobacter carbinolicus DSM 2380]
 gi|77544374|gb|ABA87936.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pelobacter carbinolicus DSM 2380]
          Length = 947

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 75/186 (40%), Gaps = 11/186 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFK 140
             +         I QL+  D L+GL N + F               +  +++F  +D   
Sbjct: 494 RDISSQRQVEREIKQLAYYDSLTGLPNRALFEDRFRRVLTTADRAGKMAALLFIGVDNLN 553

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND  GH  GDK++  +  +LV V      V R  G++F     G S  + A  +A  +
Sbjct: 554 SINDTHGHTYGDKLLKVIGQRLVAVAQNGATVVRWEGDKFVVLLPGLSDAETADTVARQI 613

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + I   +       S  +T S G A    H      ++  AD A+Y +K+ GRN    F
Sbjct: 614 LQSIA--EPCEVDDQSFFVTASIGGAVYPQHGADGDKLLKNADMAMYASKELGRNTYCTF 671

Query: 259 SDIENN 264
           ++  N 
Sbjct: 672 TEEMNR 677


>gi|254785704|ref|YP_003073133.1| PAS/GGDEF/EAL domain-containing protein [Teredinibacter turnerae
           T7901]
 gi|237684709|gb|ACR11973.1| PAS/GGDEF/EAL domain protein [Teredinibacter turnerae T7901]
          Length = 836

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 9/184 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + +   +  ++  L+  D L+GL N   F  SL            +  +++ D+DYFK I
Sbjct: 395 ITKRKEAQRQLEYLAMHDSLTGLFNRHYFEESLRQSFADAIRNQRQHGLIYIDLDYFKVI 454

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH  GD+V+  ++  +         + RLGG+E+A        ++   +A +L+ I
Sbjct: 455 NDTFGHHEGDEVLRQVAHLMKRRIRAADLLCRLGGDEYAVLVHDVCSKKLLEIARELQAI 514

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           + +  +  +    +++  S G++    +       + +AD ALYVAK  GRN +  +   
Sbjct: 515 VNDF-VYQAKNHRVNLGCSIGLSVIDGEAVCAEEYLMQADIALYVAKGRGRNLIHLYDPQ 573

Query: 262 ENNT 265
           +  +
Sbjct: 574 DQES 577


>gi|220933683|ref|YP_002512582.1| diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994993|gb|ACL71595.1| diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 410

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/273 (23%), Positives = 100/273 (36%), Gaps = 42/273 (15%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIF----------------LFYIGLTPFYGLEYIL 65
            S  TFM Y +    + I   +FI   F                LF  G+ P   L  IL
Sbjct: 120 LSGTTFMEYLAGLMLVMIWIFLFIGLSFVRALLINLLVLVLFNGLFLAGIQP---LGEIL 176

Query: 66  VENLSLVIISITISLLLGY-------ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           V     ++ ++ I     Y             +EL    NR    +  D L+ L N    
Sbjct: 177 VRYNFYLVSTLLICGFSAYALERQRRQLYLRRQELESERNRHRDRALHDHLTNLPNRYQM 236

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L         +    + +F D+D FK +ND++GH  GD+V+  ++ +L         
Sbjct: 237 EQRLEQAMARARRHGRLGAGLFIDLDRFKPVNDSYGHEAGDRVLRQVAQRLQACVRESDS 296

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI------SSGPSIHITISAGIA 225
           V R+GG+EF         + +  +     +IIE               P + +  S GI 
Sbjct: 297 VARMGGDEFFVLL--EDLETSERIHEVALRIIEALSQPFPIDEQDPQSPLVTVGASIGIC 354

Query: 226 ERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
           E          +I  AD+A+Y  K+SGRN    
Sbjct: 355 EFPDMTASPPEVIDHADRAMYEVKRSGRNGYCF 387


>gi|148549434|ref|YP_001269536.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas putida F1]
 gi|148513492|gb|ABQ80352.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas putida F1]
          Length = 334

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  S   + +L   D L+GL N   F   L           ++LS++  D+DYFK  N
Sbjct: 156 QQLLDSNLMLQRLMNSDGLTGLSNRRHFDEYLELEWRRAMREQQQLSLLMIDVDYFKAYN 215

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D+FGH  GD+ +  +++ +            R GGEEFA     +S   A ++A  LR+ 
Sbjct: 216 DSFGHLAGDEALRQVAEAIRSSCSRPTDLPARYGGEEFALVLPNTSPGGARLVAEKLRQT 275

Query: 203 IENSQINISSG-PSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255
           +    I  ++      +T+S G+A +          +I  AD+ LY+AK  GRN+V
Sbjct: 276 VLGLGIPHTASTADTCLTVSIGLATQTPAIGSHCRQLISAADKGLYLAKNGGRNQV 331


>gi|114563939|ref|YP_751453.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114335232|gb|ABI72614.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 530

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 84/174 (48%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           KE    + +++ L   D L+ L N +A    +         +   L I   DID+FK IN
Sbjct: 359 KEKLFEHQKLNLL---DPLTQLANRTALEDRMEQEYRNHVRFKTPLWIAITDIDHFKNIN 415

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           DNFGH  GDK +  ++  L        FV R GGEEF       +++  + L N +R+ I
Sbjct: 416 DNFGHSTGDKTLQVIAMALKNSLRDSEFVARYGGEEFVLLLPDVTDEHISQLLNRVREKI 475

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +N      +   I +T+S G A+    E +     RAD ALY AK +GR+RVV 
Sbjct: 476 KNIPFKFKN-QRITVTLSIGAAQVMENETLEEAFERADAALYQAKNNGRDRVVI 528


>gi|219847558|ref|YP_002461991.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Chloroflexus aggregans DSM 9485]
 gi|219541817|gb|ACL23555.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Chloroflexus aggregans DSM 9485]
          Length = 830

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           E   + ++++  +  D L+GL N   F   L          N  ++++F D+D FK +ND
Sbjct: 391 EQHTTLHKLAYQAHHDALTGLPNRLLFEDRLQQAIDLARRNNSLVAVLFIDLDRFKHVND 450

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
             GH +GD ++  ++ +  +       + R GG+EF       +S Q  A +A  L + +
Sbjct: 451 TLGHAIGDLLLIQVARRFELCLRATDTLARHGGDEFLLVLPEITSPQHVATVARRLHEAL 510

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  +    +G  I ++ S G +        + ++   AD A+Y AK + RN    F 
Sbjct: 511 D--RPFFINGHEIFVSASIGASLYPIDGSDVVSLQRAADIAMYRAKHTLRNSFQFFD 565


>gi|149375318|ref|ZP_01893089.1| hypothetical protein MDG893_02570 [Marinobacter algicola DG893]
 gi|149360354|gb|EDM48807.1| hypothetical protein MDG893_02570 [Marinobacter algicola DG893]
          Length = 807

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 17/221 (7%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGS-----ILKELFISYN---RISQLSRI 106
           +  +     I+ ++   +   +T+S +    S S     +++++  S+     +S ++  
Sbjct: 309 IDSYTTEHRIVRKDNDFLWARLTVSRVWDAPSSSAYFTTVMEDISESHRLSTELSYMATH 368

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL+N  AF   L S+        ++ ++ + D+D FK  ND  GH  GD+++  +S
Sbjct: 369 DSLTGLINRRAFEQQLASHLGHVRNGGKQHALCYIDLDQFKLANDTSGHDAGDQLLRQVS 428

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           D +         + RLGG+EF           A  +A  +R  +++   +     S  I+
Sbjct: 429 DIISRNLREADILARLGGDEFGIILQNCDLDTAHHVAEKVRASLDHLVFSWQQ-TSHTIS 487

Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            S G+         IS ++  AD A Y AK  GRNRV   S
Sbjct: 488 CSIGVVPITAESAGISALMKAADIACYTAKDGGRNRVCVMS 528


>gi|89902813|ref|YP_525284.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Rhodoferax ferrireducens T118]
 gi|89347550|gb|ABD71753.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 1052

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 93/219 (42%), Gaps = 19/219 (8%)

Query: 64  ILVENLSLVIISITISLLLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +  E L++  +         Y++  + L     + ++I  L+  D L+GL N    +  L
Sbjct: 580 VFPEWLTISAVKDPAGQATHYVATFTDLSTRKSAEDQIKSLAFYDTLTGLPNRRLLLDRL 639

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                    +  + ++++ D+D FK +N+ +GH VGD+++  ++ +L         V R 
Sbjct: 640 KQALASGARHRRQGALLYIDLDDFKTLNNTYGHDVGDQLLQEVAQRLSHYLRAGDTVARP 699

Query: 176 GGEEFAAAALGSS------EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
           GG+ F       S        EA      +R  +  SQ    +  +   T S G+     
Sbjct: 700 GGDSFVVLLEALSTNSVEAATEAENTGEKIR--LALSQPYQIADHAHRSTASIGVTLFDD 757

Query: 230 --KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             +E I   + RA+ A+Y AK +GRN +  F D +  T 
Sbjct: 758 RQQEGIDEPLKRAELAMYQAKTAGRNTLRFF-DPQMQTA 795


>gi|332306393|ref|YP_004434244.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173722|gb|AEE22976.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 350

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 110/240 (45%), Gaps = 12/240 (5%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
              F +T+  +  I  ++     F  LE     N+++    I  +LL+   +    K   
Sbjct: 113 LGFFYSTIFIVCGIISYHWR---FISLEQQFSLNVAISANVILSALLMMAFAHVYEKTRE 169

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFG 147
            +  R+  L+  D L+GL N                 +N  L++V FD+D FK IND  G
Sbjct: 170 QNEARLLSLAGTDPLTGLANRMKLNEGFQQLSALATRHNAPLTLVLFDLDLFKTINDVHG 229

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD  +  +++ L         + R GGEEFA   + +  +E       LRK +  + 
Sbjct: 230 HSVGDDALRHVANFLQTNTRKTDLLARFGGEEFALLMVATDLEEGYGQIEALRKRLMITP 289

Query: 208 INISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            + ++   I IT+SAG++   C  + ++ +I +AD+ LY AK++GRN+V+      N   
Sbjct: 290 FS-TAKCDIQITLSAGLSTYGCDGKSLNQLIAKADKRLYHAKENGRNQVIAHDPDTNQKA 348


>gi|307132658|ref|YP_003884674.1| GGDEF domain-containing protein [Dickeya dadantii 3937]
 gi|306530187|gb|ADN00118.1| GGDEF domain protein [Dickeya dadantii 3937]
          Length = 380

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 66/216 (30%), Positives = 106/216 (49%), Gaps = 21/216 (9%)

Query: 53  IGLTP-FYGLEYILVENLSLVIISITISL---LLGYISGSILKELFISYNRISQLSRIDC 108
           +G +P F  +     E ++L  IS+ I++   LL  ++   L EL  +       +R D 
Sbjct: 155 LGSSPGFSNIATSSAEIITLACISLMIAVMGSLLSLVAKKYLIELPTT-------ARYDD 207

Query: 109 LSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+G L   AF  S           ++ +  +  DID+FKQ+ND  GH  GD+ +  +++ 
Sbjct: 208 LTGFLRRDAFYQSANRALKAARHESKPMCAMLIDIDHFKQVNDTLGHAAGDEALKAVANV 267

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +   F     + RLGG+EFA      S++ A  +A  +R+ I     + SS  S  IT+S
Sbjct: 268 IRHSFRRHDILCRLGGDEFAVVLPNISQENAVRVAERVREGIHELG-HTSSSMSPGITVS 326

Query: 222 AG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G +A     E +  II RAD  LY+AK++ RN  +
Sbjct: 327 IGLVAVESPDEGLDEIIRRADVNLYLAKRT-RNCTI 361


>gi|257094362|ref|YP_003168003.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257046886|gb|ACV36074.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 357

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 60/182 (32%), Positives = 89/182 (48%), Gaps = 10/182 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDY 138
           S    ++L     R  + + ID L+GL N   F  +L +  E+         ++  D+D 
Sbjct: 159 SRRETQQLRQEVARAREEALIDGLTGLSNRKGFDLALTTCLEQATPEMPGPCLLMIDLDN 218

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++ND  GH  GD+V++ +   L           R GGEEFA     +    A  LA  
Sbjct: 219 FKRLNDGLGHVFGDRVLSSVGQILRANVKGKDTAARYGGEEFAVILPQTPRGGAIGLAEA 278

Query: 199 LRKIIENSQINI--SSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           LR ++  S+I      GP I  IT+S G+A+    E  +  + RAD+ALY+AK  GRNRV
Sbjct: 279 LRALVAASRIRRVGDEGPLIGNITVSIGVADYLAGESPTDFVNRADRALYLAKTQGRNRV 338

Query: 256 VC 257
           + 
Sbjct: 339 IL 340


>gi|256395339|ref|YP_003116903.1| diguanylate cyclase [Catenulispora acidiphila DSM 44928]
 gi|256361565|gb|ACU75062.1| diguanylate cyclase [Catenulispora acidiphila DSM 44928]
          Length = 467

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 116/259 (44%), Gaps = 30/259 (11%)

Query: 25  HTFMIYFSIFF--SIFIATVIFIANIFLFYIGLTPFYGLEY---ILVENLSLVIIS---- 75
              +I F++ F  S  +  ++ ++   LF   L P     +   I+   L+++ ++    
Sbjct: 202 AALLITFTLAFNHSNAVDGMLLLSWPLLFAAYLLPRRTAYWTLGIVAACLTVIFVAGTGP 261

Query: 76  --------ITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSY- 125
                    T S+ L  +    ++E      + +++ +  D L+GL N  AF  +L    
Sbjct: 262 GRFAAWIETTTSMALTLVVILRVREQADRLKQALAEQASTDPLTGLSNRRAFDEALEREA 321

Query: 126 ------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                    LS++  D+D+FK+IND +GH  GD  +A L D L  +      V R+GGEE
Sbjct: 322 ARQRRTRAPLSLLAVDVDHFKKINDTWGHAAGDDTLAALGDLLPRLVRADDTVSRVGGEE 381

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIY 238
           F          +A   A+ LR  +  +    S G S  +T+S G+A        +  ++ 
Sbjct: 382 FGVLLPDCPAPQARARADALRAEVWAA----SRGWSHPVTVSVGVATVPDSADALQDLVV 437

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD ALY AK+SGR+RV  
Sbjct: 438 AADMALYAAKESGRDRVRV 456


>gi|149180816|ref|ZP_01859319.1| sensory box/GGDEF family protein [Bacillus sp. SG-1]
 gi|148851606|gb|EDL65753.1| sensory box/GGDEF family protein [Bacillus sp. SG-1]
          Length = 778

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 94/206 (45%), Gaps = 11/206 (5%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE 127
            ++L+ I +   L    I    + E+  +  +I  L+  D L+GL N   F+  L    E
Sbjct: 311 QITLIPIFVKEKLANINILAKDITEVIQTREQIQHLAYHDSLTGLPNRFQFVKELQQRIE 370

Query: 128 ----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                 ++ F D+D FK IND  GH  GD+++  LS++        + V R+GG+EF   
Sbjct: 371 TSKLPAAVCFLDLDRFKVINDVLGHQTGDRLLLQLSERFTSFVKEDVKVARMGGDEFTFL 430

Query: 184 ALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHK-EPISTIIYRAD 241
                    A L N + +++   Q         + +T S GI+   +  + +  ++  AD
Sbjct: 431 FPEIPS--MAELENKIEELMALIQTPFQIEKQELFVTGSMGISIYPNDSDTVEDLMKYAD 488

Query: 242 QALYVAKKSGRNRVVCF---SDIENN 264
            A+Y +K+ G+N    +   +D E++
Sbjct: 489 VAMYRSKEKGKNTFEFYHQQNDEESS 514


>gi|116252351|ref|YP_768189.1| GGDEF/EAL sensory box protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115256999|emb|CAK08093.1| putative GGDEF/EAL sensory box protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 765

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 81/184 (44%), Gaps = 11/184 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDID 137
           ++ +  +EL  +   I  L+  D L+GL N       L     +       L+I+  D+D
Sbjct: 298 LAEARNRELEAAKESIEHLALHDYLTGLPNRRYLDKMLDERAAECRAKGLALAILHIDLD 357

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILA 196
            FKQIND  GH  GD ++   +  L        FV R+GG+EF    +   + ++ A LA
Sbjct: 358 RFKQINDTLGHRAGDAMLQHAASVLRTSVRAVDFVARIGGDEFVILCIVDPASKKIASLA 417

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             + +  E  +     G       S GIA +   K     ++  AD ALY AK  GRNR 
Sbjct: 418 ERVIR--ELRKPVRYEGHDCRFGASIGIAIDSGPKLDAKQMLLDADIALYRAKGLGRNRF 475

Query: 256 VCFS 259
             FS
Sbjct: 476 EFFS 479


>gi|83648643|ref|YP_437078.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83636686|gb|ABC32653.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 538

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 8/166 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  +   D L+GL NH+  ++ L           E L     DIDYFK+IND  GHPVGD
Sbjct: 373 LHAMMIRDSLTGLYNHTHTLNLLSMEINKANQTGEPLCFAMMDIDYFKRINDTHGHPVGD 432

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  +S  L         +GR GGEEFA     + E +A  + ND+R+      ++ + 
Sbjct: 433 RVLKSMSLFLKQRLRKTDHIGRYGGEEFAVVLPNTDECDAKNMMNDIRERFGEL-MHPTE 491

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +  +T S GIA          +  +AD+ALY AK +GRN V  F
Sbjct: 492 SDTFKVTFSCGIAAYQAGNTQQVLAQKADKALYEAKHAGRNCVKVF 537


>gi|329848652|ref|ZP_08263680.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
 gi|328843715|gb|EGF93284.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
          Length = 726

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 18/205 (8%)

Query: 76  ITISLLLGYISGSILKE-------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           + ISL LG I+  +L +       L  S  +   ++  D L+GL N + F   L    E+
Sbjct: 256 LMISLGLGLIAIVLLHQSQKAAQGLIASEAKAKHMALHDNLTGLPNRTLFADRLNQACER 315

Query: 129 L-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
           L       +++   +D FK +ND  GH  GD++I   + ++  +  +   + RLGG+EF 
Sbjct: 316 LNRQGGQVAVMCIGLDRFKDVNDTLGHLAGDELIRHNAAKISGIIRSGDTLARLGGDEFV 375

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRA 240
                +    AA LA  + +++    +N+ SG     + S G+      E   +  + +A
Sbjct: 376 IIQTDTDGLSAAALAKRVLEVL-TGTVNLESGQVFS-SCSIGVTLIHEGEIEPAEALRQA 433

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D ALY AK  GR +   F ++E + 
Sbjct: 434 DLALYRAKDLGRGQYAFF-ELEMDA 457


>gi|327253982|gb|EGE65611.1| protein gmr [Escherichia coli STEC_7v]
          Length = 661

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLREVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|300713176|ref|YP_003739215.1| diguanylate cyclase [Erwinia billingiae Eb661]
 gi|299060247|emb|CAX53497.1| diguanylate cyclase [Erwinia billingiae Eb661]
          Length = 529

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 104/238 (43%), Gaps = 16/238 (6%)

Query: 32  SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK 91
           +++F + I  ++    I       +P   L   +    S   +     +   Y     L+
Sbjct: 282 AVWFILLIVILVGCLVILFAARISSPLEKLAQSINTPDSGATLRALPQINAWYTEAVRLR 341

Query: 92  E-----LFISYNRISQLS---RIDCLSGLLNHSAFISSLGSYNEKLS--IVFFDIDYFKQ 141
           E     L +  N++S L+   R D L+GLLN   F + +  +    S   +  DID+FK+
Sbjct: 342 EAVYHHLQMMINQVSSLTDETRTDPLTGLLNRRGFTTFIRQHARTHSHCAIAVDIDHFKK 401

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH  GD V+  L+  L     +   V R GGEEF      +   +AA  A  +R 
Sbjct: 402 INDRLGHDAGDAVLISLAGLLRSACRSSDIVSRSGGEEFVIFLPDTQLPDAAATAERIRH 461

Query: 202 IIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++E S    +      IT+SAG+A            +  +AD ALY AK +GRN V+ 
Sbjct: 462 LVETSVFPYAG----QITVSAGVAALIDVQGSSTEGLFRQADMALYEAKGAGRNIVII 515


>gi|259907764|ref|YP_002648120.1| Putative exported protein, probable fragment [Erwinia pyrifoliae
           Ep1/96]
 gi|224963386|emb|CAX54873.1| Putative exported protein, probable fragment [Erwinia pyrifoliae
           Ep1/96]
 gi|283477624|emb|CAY73540.1| Protein yhjK [Erwinia pyrifoliae DSM 12163]
          Length = 375

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 9/164 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+   ++ D ++GLLN     + L    S  +  +++  DID FK +ND FGH  GD VI
Sbjct: 199 RLRSEAQTDPMTGLLNRRGLDAVLDYFFSTKQPFAVLALDIDRFKSVNDAFGHAAGDTVI 258

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++ QL +       + R GGEEF     G+    A ++A  +RK IE  ++  +    
Sbjct: 259 KTVAHQLELGARQADVLCRNGGEEFLMLLPGADRDRALMVAERVRKRIEQLRMEAAG--- 315

Query: 216 IHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            ++TIS GI+       E +     +A +ALY AK +GRN VV 
Sbjct: 316 -NVTISIGISFWSSDSGEDMHCAFGQAVEALYRAKNAGRNCVVV 358


>gi|224826135|ref|ZP_03699238.1| diguanylate cyclase [Lutiella nitroferrum 2002]
 gi|224601772|gb|EEG07952.1| diguanylate cyclase [Lutiella nitroferrum 2002]
          Length = 507

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 11/168 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           +       +  L+  D L+GL N + F   L           ++L+++  D+D FK +ND
Sbjct: 338 DRVAREQELFHLANHDALTGLANRNLFEDRLQHAIRRVRRNGKRLALLLLDMDRFKPVND 397

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKII 203
            +GH  GD+V+  ++ +L  V      V RLGG+EF           + A +   L+  +
Sbjct: 398 TYGHAAGDRVLQLIAARLNEVLRGEDTVARLGGDEFVVLLEDVDADADVAQVLERLQLAL 457

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250
           +  +     G ++ + +S G A   H  + I  ++  AD+ +Y AK+ 
Sbjct: 458 Q--EPYDIDGGTVTLGVSIGTAFYPHDGDSIEELLAVADRTMYSAKQR 503


>gi|220904032|ref|YP_002479344.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868331|gb|ACL48666.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 340

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 60/200 (30%), Positives = 87/200 (43%), Gaps = 32/200 (16%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQI 142
           + EL    ++  QLS ID L+GLLN  AF+         L       S++  DID+FK +
Sbjct: 132 VSELTRLSHKYKQLSFIDPLTGLLNRRAFMVKAEKTLELLREEGLPASVLLADIDHFKAV 191

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD+V+   S  +           R GGEEF     G    EA  L   +R  
Sbjct: 192 NDTYGHACGDEVLVRFSRCISSFLREQDLCCRYGGEEFVILLAGEELAEACELGEKIRSA 251

Query: 203 IENS------------------QINISSGPSIHITISAGIAERCHKEPISTIIYR----- 239
           +E +                  Q +I     + IT+S G++  C      +++ +     
Sbjct: 252 VEQTVMDEAAMLYCIQARSREGQASIPHPVPLRITVSLGVSRLCRDNVSCSLLQQLEAGI 311

Query: 240 --ADQALYVAKKSGRNRVVC 257
             AD+ LY AK +GRN VVC
Sbjct: 312 AEADRCLYRAKYNGRNSVVC 331


>gi|237755618|ref|ZP_04584232.1| ggdef domain protein [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692213|gb|EEP61207.1| ggdef domain protein [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 411

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/202 (31%), Positives = 101/202 (50%), Gaps = 20/202 (9%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y ++ N+  ++I I    L  Y++   +K         S++S ID L+G  N  +F + +
Sbjct: 223 YFMILNIQNIVIWIGNEFL--YLNTKFIK---------SEMS-IDPLTGAFNRRSFETII 270

Query: 123 GSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
               E        +++   D+DYFK+IND FGH  GD+ +    + +        +V R+
Sbjct: 271 QKLLEISQITDAPITLAMADLDYFKKINDTFGHLTGDEALKHFVNIIKRNLRKSDYVFRI 330

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           GGEEF      +  ++A  +   +RK +E + +    G  I IT S G+AE    + I+ 
Sbjct: 331 GGEEFLILLPNTELKDAVEIVERIRKDLEENPLYF-DGKEIKITASFGLAEVDKNKYINE 389

Query: 236 IIYRADQALYVAKKSGRNRVVC 257
           II  AD+ LY AK+ GRNRVV 
Sbjct: 390 IIKEADEKLYKAKELGRNRVVV 411


>gi|254518217|ref|ZP_05130273.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium sp.
           7_2_43FAA]
 gi|226911966|gb|EEH97167.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium sp.
           7_2_43FAA]
          Length = 960

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 95/189 (50%), Gaps = 13/189 (6%)

Query: 85  ISGSI--LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVF-FD 135
           ISGSI  + E   +  +I  L+  D L+GL N   F+  +         NE + + F  D
Sbjct: 516 ISGSISDITERKKAEEKIETLAFYDQLTGLPNKHMFLDKIDDELLRGLKNEYIGVAFLID 575

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAI 194
           ID FK IND  GH  GD+ +  ++ + + +     F+ +L G+EF    L  + + EA  
Sbjct: 576 IDNFKNINDTLGHDYGDEFLKCIAKEFIKLLDNDEFICKLDGDEFLILMLDVNGKAEAEE 635

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253
           +AN + ++ +N    +    +I  ++S GI+   +     S ++  +D A+Y AK++G+N
Sbjct: 636 MANKILELFKN-PFKVKE-KNIFTSVSIGISIIPNDARNKSELLKNSDIAMYKAKENGKN 693

Query: 254 RVVCFSDIE 262
           R + + +  
Sbjct: 694 RYLFYRESM 702


>gi|77920043|ref|YP_357858.1| GGDEF domain-containing protein [Pelobacter carbinolicus DSM 2380]
 gi|77546126|gb|ABA89688.1| diguanylate cyclase [Pelobacter carbinolicus DSM 2380]
          Length = 498

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 89/197 (45%), Gaps = 15/197 (7%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------ 123
           SL+   + I ++LG    ++ +      N + +++  D L+G  N   F           
Sbjct: 293 SLIFDLLIIVVVLGITIYTVNR----FQNTLEEMATTDKLTGAWNRREFDRCFDMACYLS 348

Query: 124 -SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                  S+V FD+D FK IND  GH  GD+V+  +             V R GG+EF  
Sbjct: 349 KRQGRPFSVVLFDVDDFKTINDELGHMAGDQVLKEVVRLADEHIRQDDLVVRWGGDEF-V 407

Query: 183 AALGSSEQEAAILANDLRKIIENSQ-INISSG--PSIHITISAGIAERCHKEPISTIIYR 239
             + +    A  +A  LR+ I N   +N  SG    + +TIS G+      E +  ++ R
Sbjct: 408 LLVHNDLAHARQVAERLREEICNRDLLNGVSGSCDEVAVTISCGVVMYDEGETLDHLMMR 467

Query: 240 ADQALYVAKKSGRNRVV 256
           AD ALY +KK G+N+ V
Sbjct: 468 ADAALYESKKQGKNQTV 484


>gi|284042708|ref|YP_003393048.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
 gi|283946929|gb|ADB49673.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
          Length = 1090

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 82/183 (44%), Gaps = 11/183 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           + + + E   +  +I+ L+  D L+ L N +     L           E +++++ D+D 
Sbjct: 646 AFTDVTERRRAQEQIAFLAYHDSLTRLPNRALLDEHLALALARARRAGESVALLYVDLDD 705

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND+ GH  GD+++  ++ +L  V  +   + R GG+EF         ++  + A  
Sbjct: 706 FKAVNDSLGHAAGDELLKRIAVRLRAVVRSSDLLARQGGDEFLILLTDLD-KDPRLSAEA 764

Query: 199 LRKIIENS--QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             K +E +  +    +     +  S GI+          T++  AD A+Y  K++GR  +
Sbjct: 765 AAKQVETALIEPFHLADAEFEVGASIGISIYPDDAADADTLMRHADAAMYEVKQAGRGGI 824

Query: 256 VCF 258
             +
Sbjct: 825 ASY 827


>gi|257484751|ref|ZP_05638792.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330986383|gb|EGH84486.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011195|gb|EGH91251.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 523

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/215 (26%), Positives = 102/215 (47%), Gaps = 14/215 (6%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILK----ELFISYNRISQLSRIDCLS 110
             P++   Y  +    ++I+++ +  +L Y     L     EL I+ N +  ++  D L+
Sbjct: 287 FAPWWAYAYRSMTITGIIILALVLLGVLLYRQIQQLINAEGELNIARNELEIIAHTDSLT 346

Query: 111 GLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL- 162
            L N   F ++L     +       ++I+  DID+FKQ ND +GH +GD  +  ++  + 
Sbjct: 347 HLANRRCFDAALQQEWGRASRNTATIAIILLDIDWFKQYNDTYGHLLGDDCLKQVAGLIG 406

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             +        R GGEEF      +    A  +A  +R  +E ++I  S+ P   +TIS+
Sbjct: 407 NSLDRAGDIAARYGGEEFVILLPETDLAGALKIAEKIRSSVETNRIEHSASPLGKLTISS 466

Query: 223 GIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G+       K+  +  +  AD+ LY+AK  GRNRV
Sbjct: 467 GVVSINAAEKDGHTAALAEADRLLYLAKTRGRNRV 501


>gi|256393116|ref|YP_003114680.1| diguanylate cyclase [Catenulispora acidiphila DSM 44928]
 gi|256359342|gb|ACU72839.1| diguanylate cyclase [Catenulispora acidiphila DSM 44928]
          Length = 349

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 103/239 (43%), Gaps = 12/239 (5%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI 85
             ++ +++ +S ++  +                       V+   L I   +  L++  +
Sbjct: 91  PVLLTWTVVYSAYMLAIHVAWMTMGVVAASFAAAAFASRGVDGTDLWIAVTSAILVVFML 150

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
              +  +      ++  L+R D L+GL+NH  F  +LG            +S++  DID 
Sbjct: 151 VIRLRSQSDRLSAQLIALARADPLTGLVNHRGFEEALGRAQVRHSRDGRPVSLLAIDIDR 210

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND +GHP GD V+  L+  L   F +   + R+GGEEFA         EA   A  
Sbjct: 211 FKDVNDTWGHPAGDAVLQELAKLLAAYFRSGDVIARVGGEEFAVLISDCGVHEALRRAQG 270

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           L   +    +         IT+S G+A    + E    +   AD+ALY AKK+GR+ VV
Sbjct: 271 LLGRVREDSLTWDH----RITVSIGVATVPDQVEDFDGLHRSADRALYRAKKAGRDGVV 325


>gi|167625252|ref|YP_001675546.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167355274|gb|ABZ77887.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 396

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/217 (29%), Positives = 98/217 (45%), Gaps = 28/217 (12%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
            + + ++   +L L I   T++ +       IL  L  SY     L+  D L+GL +  A
Sbjct: 191 LWAVHFVFPASLPLSISMTTLATI------YILTVLTDSY----FLAYRDELTGLASRRA 240

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
             + + S   K S+   DID+FK+ ND +GH VGD+V+  ++ ++  V G      R GG
Sbjct: 241 LYNLVLSLGRKYSVAMLDIDHFKKFNDTYGHDVGDQVLRLVASKIAKVSGGG-KAFRYGG 299

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISS-----------------GPSIHITI 220
           EEF                 D+R+ IE   I + +                   ++ +TI
Sbjct: 300 EEFTVIFPRKDSSAVLGYLEDVREAIEEYDIVLRNEQRKSQSKAKRGKAQQKSQTVSVTI 359

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S G+AE    E     + R+DQALY AKK GRN++  
Sbjct: 360 SIGVAEHQSGETFEQTMKRSDQALYKAKKKGRNQICV 396


>gi|152982088|ref|YP_001354597.1| hypothetical protein mma_2907 [Janthinobacterium sp. Marseille]
 gi|151282165|gb|ABR90575.1| Hypothetical protein mma_2907 [Janthinobacterium sp. Marseille]
          Length = 719

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           L + ++    + E  +    +  ++  D L+ L N  A I  L           + L+++
Sbjct: 535 LFIAFLH--DITERKLLQASLMGMALKDPLTDLPNRRALIQRLPESIARAARLGKPLAVL 592

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQE 191
           F D+D FK +ND +GH  GD+++  ++ +L+    T   V RL G+EF     + + + +
Sbjct: 593 FLDLDGFKGVNDGYGHEAGDELLRTIAQRLLGAVRTTDTVARLAGDEFVIVLEMLNGDSD 652

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKK 249
           A  +A+ +   ++  Q    +  ++ I+ S GIA    ++      +I  AD A+Y AKK
Sbjct: 653 AMDVADKILHTLQ--QPFTLTAATVTISASIGIAMHWPEDHTTPEQLITLADGAMYAAKK 710

Query: 250 SGRNRVVC 257
            G+NR V 
Sbjct: 711 KGKNRAVA 718


>gi|197119693|ref|YP_002140120.1| PAS domain-containing sensor diguanylate cyclase [Geobacter
           bemidjiensis Bem]
 gi|197089053|gb|ACH40324.1| sensor diguanylate cyclase, PAS domain-containing protein
           [Geobacter bemidjiensis Bem]
          Length = 297

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 8/173 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHS----AFISSL---GSYNEKLSIVFFDIDYFKQIND 144
           ++  +  ++ Q   +D L+G+ N      +  S L    ++     ++F D+D+FK +ND
Sbjct: 125 QILAALEQLKQDVLVDPLTGVGNRRLADMSLESRLHDWQTHRRPFGVLFMDVDHFKSVND 184

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+  L   +   F     V R GGEEF A          A +A  +R  + 
Sbjct: 185 RYGHKTGDEVLRMLGKTISNTFRKVDTVARWGGEEFVAILPAMRLPALASIAERIRSAVA 244

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            S   +  G  + +T+S G       +   +II RAD  +Y +K  GRN V  
Sbjct: 245 GS-FLMEDGQRVGVTLSIGGTIAETGDNAESIISRADAQMYRSKAGGRNLVTL 296


>gi|183179352|ref|ZP_02957563.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|183012763|gb|EDT88063.1| GGDEF family protein [Vibrio cholerae MZO-3]
          Length = 976

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 22/228 (9%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI------------- 95
           F +   + P +     ++    ++ +++ +SL++  I     +EL++             
Sbjct: 739 FSYVFIIEPHWWQRKEVIVMAGMLFLALAVSLVMWRIRILKRRELYLVEQVALQTQKLRL 798

Query: 96  SYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
              +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIND + H
Sbjct: 799 QAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIAVLDIDHFKQINDRYSH 858

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+ I  +S +L+   G    V R GGEEF    +G   ++A      LR  IE   +
Sbjct: 859 IIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVG-DPKQAWGYFEKLRCKIEQVDL 917

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  + P +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 918 SAVA-PGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 964


>gi|157164317|ref|YP_001467178.1| threonine dehydratase [Campylobacter concisus 13826]
 gi|112801352|gb|EAT98696.1| diguanylate cyclase [Campylobacter concisus 13826]
          Length = 418

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 10/184 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVF 133
           L+  ++ +I  E   + N+I+  +  D L+G  N   F   +  Y       +E  +   
Sbjct: 236 LICRVNNTI--EAMENINKIANFANRDFLTGAYNRRFFYQDIEEYVQAAEELDEPYAFAM 293

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK+IND +GH  GDK++  L+  L         V R GGEEF       +++EA 
Sbjct: 294 LDIDHFKKINDTYGHDGGDKILKSLAKILTDNTKGRDVVARFGGEEFCVVLKKIAKEEAI 353

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
               +LR  +  +++ I     + +T+S GI+       I  ++   D ALYVAK++GRN
Sbjct: 354 KFFVNLRAKVAENEVIIKDKI-VRVTVSIGISFGKGHCEIDDMLEACDSALYVAKENGRN 412

Query: 254 RVVC 257
           RV  
Sbjct: 413 RVEI 416


>gi|78188889|ref|YP_379227.1| diguanylate cyclase [Chlorobium chlorochromatii CaD3]
 gi|78171088|gb|ABB28184.1| diguanylate cyclase (GGDEF domain) [Chlorobium chlorochromatii
           CaD3]
          Length = 418

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 12/194 (6%)

Query: 82  LGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
           +  I+ S+++   ++     ++ +L   D  + L N+  F       I       + LS+
Sbjct: 222 ITQITESVIRLCGDIEAKNRKLDELYIRDEKTQLFNYRHFKEHLILDIERAKRQLDSLSL 281

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              DID+FKQ ND  GH  GDK +   ++ +           R GG+EFA     +S  +
Sbjct: 282 AMLDIDFFKQYNDANGHLSGDKALKRFAELISAECRVYDLPARFGGDEFALLFPRTSAAD 341

Query: 192 AAILANDLRKIIENSQINISS-GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKK 249
           AA +A  LR +IE++    +   P   +TIS G+A   +  +   +++  AD+ALY AK 
Sbjct: 342 AADIAERLRHLIESASFPHAECFPDGKLTISIGLATFPNDAQDWHSLLNNADRALYKAKA 401

Query: 250 SGRNRVVCFSDIEN 263
            GRN VV FS+++ 
Sbjct: 402 LGRNSVVSFSEVKQ 415


>gi|295699114|ref|YP_003607007.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
 gi|295438327|gb|ADG17496.1| diguanylate cyclase [Burkholderia sp. CCGE1002]
          Length = 607

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 97/227 (42%), Gaps = 16/227 (7%)

Query: 48  IFLFYIGLTPFYGLEYI----LVENLSLVIISITISLLLGYISGSILKELFISYNRISQL 103
           + L     T  +    +    L     + +++     L   I   +   L    + +  L
Sbjct: 351 LHLLAYAATHLFAEHAMHTLPLKRTDEIGVLARCFERLRREIRAQM-DALHSKQSELVHL 409

Query: 104 SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  D L+GL N   F+  L +         E L+++F D+D FKQIND FGH VGDKV+ 
Sbjct: 410 ASHDVLTGLPNRMLFMQKLENAIEEARFRREGLAVLFVDLDRFKQINDQFGHSVGDKVLV 469

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSGPS 215
            ++ +L  V      V RLGG+EF     G    E    +A  +   +  +      G S
Sbjct: 470 AVARRLKDVLYAGDVVARLGGDEFIVLIEGRRAAEVTPEIAERIMDALNKTL--SVDGNS 527

Query: 216 IHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           + +  S GI+E  H       ++  AD A+Y AK  GR   + + D+
Sbjct: 528 MTVGASIGISEFPHDSGNAEELLLNADAAMYAAKSGGRCGYLRYQDL 574


>gi|59713335|ref|YP_206110.1| GGDEF domain-containing protein [Vibrio fischeri ES114]
 gi|59481583|gb|AAW87222.1| GGDEF domain protein [Vibrio fischeri ES114]
          Length = 483

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 113/230 (49%), Gaps = 16/230 (6%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL-GYISGSILKELF 94
            +++  V  +  I L     + +    YI +  +  +++   I L+   Y  G +  E  
Sbjct: 256 GVYVKKVSDLPFIILVTKAKSHWVTPLYIAISTVFALLVLFAIFLVKNAYYFGKLSSE-- 313

Query: 95  ISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
                 S+L+  D L+G  N         +FI +  + N+  S+  FDIDYFKQIND +G
Sbjct: 314 --AEHYSKLALFDDLTGSCNRRCFEAKVLSFIQNYHAKNQTFSVALFDIDYFKQINDTYG 371

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD+V+   S     +  +     RLGG+EF       +  EA  + N+L + I N +
Sbjct: 372 HEIGDEVLRLFSRACENICESDDHFARLGGDEFVMLLSNKNRDEAEAILNELLRSIRNIE 431

Query: 208 INISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255
           I I +G  + +T S G++E  H +      ++ RAD+ALY AK+ GRN+V
Sbjct: 432 IRI-NGQLVQLTSSIGVSEM-HDDVFDACKLLSRADEALYEAKRLGRNQV 479


>gi|52841291|ref|YP_095090.1| sensory box/GGDEF family protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628402|gb|AAU27143.1| sensory box/GGDEF family [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 506

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 92/179 (51%), Gaps = 11/179 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           LK+L     ++S+L+  D LS L N   F       I+    Y   L+++  D+D+FK +
Sbjct: 61  LKDLESVQKKLSKLAHFDVLSRLPNRLQFELDLKREIARSKRYGRHLALLSIDLDFFKNV 120

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRK 201
           ND FGH VGD ++  ++ +L         V RLGG+EFA       + Q+A ++AN++ +
Sbjct: 121 NDRFGHDVGDGLLREVAKRLCSSLREEDCVARLGGDEFAVILTEINNPQQAKLVANNMIQ 180

Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +   Q  +  G ++ I +S GIA      +   T+   AD ALY AK+ GRN    F+
Sbjct: 181 KM--GQPFLIKGHTVMIGLSIGIAYFPDAGDEAITLRKNADIALYNAKECGRNNCQIFT 237


>gi|330808461|ref|YP_004352923.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376569|gb|AEA67919.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 582

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 9/179 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQ 141
            + E     + +      D L+GL N +     L    E        L++   D+D FK 
Sbjct: 113 DVSEKRRLLHSLQWRVGHDVLTGLPNRTYLSDLLDQALEFSRAENLPLAVCMLDLDGFKA 172

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH  GD+++  ++ +L  +      V RLGG+EF          +  + A   R 
Sbjct: 173 VNDGYGHASGDRLLVEVARRLRSIVRGEDVVARLGGDEFVLVLRHVRGMD-ELHAALSRV 231

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +I  S      G  I +  S G+       +   T++  ADQA+YVAK+SGRNR   F 
Sbjct: 232 LIAVSMPYGIDGKDIKVFASIGVTLFPWDNDDAETLLRHADQAMYVAKQSGRNRFHLFD 290


>gi|91784306|ref|YP_559512.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           xenovorans LB400]
 gi|91688260|gb|ABE31460.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           xenovorans LB400]
          Length = 769

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 84/194 (43%), Gaps = 15/194 (7%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----------KLSIV 132
            IS + +  +  +  ++  L+  D L+GL N +     L                 ++++
Sbjct: 313 LISFTDIGPVREAQRQLKFLATRDSLTGLYNRAYLTERLRDLFSLDTSSGMGELVSVAVL 372

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F D+D FK++ND  GH  GD ++  ++++L         + R+GG+EF            
Sbjct: 373 FVDLDGFKKVNDTAGHEAGDALLCSVAERLAACISPEDTLARVGGDEFVIVVSAYENTGH 432

Query: 193 AI-LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
            I LA  +  +I        +    ++  S GI+      + ++T++  AD A+Y AK+ 
Sbjct: 433 LIGLAQRILDMIAV--PFAVADNEYYLGASIGISRFPEDGQDVATLLRNADSAMYYAKQR 490

Query: 251 GRNRVVCFSDIENN 264
           GRN    F+   N 
Sbjct: 491 GRNNFQFFTAELNR 504


>gi|77918430|ref|YP_356245.1| EAL and GGDEF domain-containing protein [Pelobacter carbinolicus
           DSM 2380]
 gi|77544513|gb|ABA88075.1| diguanylate cyclase/phosphodiesterase [Pelobacter carbinolicus DSM
           2380]
          Length = 976

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 11/192 (5%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           +++S     +    + E   +  +I+ L+  D L+GL N S                  +
Sbjct: 504 LSVSAYQNMLQARFISEQNKAQKKIAYLAHYDQLTGLANRSLLKERFDYAVRHAMRSGSQ 563

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +++   D+D FK IND  GH VGD+++  ++ +L     +     R+GG+EF      + 
Sbjct: 564 VALCLLDLDGFKAINDLQGHHVGDQLLCEVAKRLQTSIRSTDMAARIGGDEFVILF--TD 621

Query: 189 EQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYV 246
            Q+ ++    ++K +            +  IT S G+A          T+   AD A+Y 
Sbjct: 622 MQKTSVATTLVQKAMSCFTSAYDLQEHTHTITASMGVAIFPEDGHDFPTLFKHADAAMYF 681

Query: 247 AKKSGRNRVVCF 258
           AK+SGRN V  F
Sbjct: 682 AKESGRNGVQFF 693


>gi|323973267|gb|EGB68457.1| GGDEF domain-containing protein [Escherichia coli TA007]
          Length = 301

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 22/258 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LV 66
            + +WL        F+   + I+  +    F A +  I+ +F+    ++ +Y    I +V
Sbjct: 48  MIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVV 107

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             L++++I +            I   L ++ N    ++  D L+ + N + F + L    
Sbjct: 108 SKLTVMVIFMC----------HIFSALRVTKN----IAHRDPLTNIFNRNYFFNELTVQS 153

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +      ++  DID+FK++ND +GHPVGD+VI  + + +         + R+GGEEF 
Sbjct: 154 ASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFG 213

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYR 239
                   + A  LA  +R+ +E    +         +TIS G +  + +    + I   
Sbjct: 214 VLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRL 273

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK++GRN+VV 
Sbjct: 274 ADNALYEAKETGRNKVVV 291


>gi|307721244|ref|YP_003892384.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
 gi|306979337|gb|ADN09372.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
          Length = 520

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 9/191 (4%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEK 128
           + + +LL +    + ++   +  ++   +  D ++G  N   F              N K
Sbjct: 331 VFMLMLLSFYLICLYQKSKNTNEKLKLQTVKDYMTGAYNRRYFFEVARALFSRAKRKNTK 390

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L+++  DID FK IND +GH +GD  I  +   L           R GGEEF A     S
Sbjct: 391 LAVIMIDIDNFKAINDTYGHDIGDLAIIEVRKVLERNLRKYDLFARFGGEEFCALLDDIS 450

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
           +++   L   +RK  EN++I  S   +I  T+S GIA       +   I  AD+ALY +K
Sbjct: 451 KEDVEKLFEKIRKDFENNRIT-SGDMTIGYTVSFGIA-YGMMSSLEKFIKVADEALYTSK 508

Query: 249 KSGRNRVVCFS 259
           ++G+N+V  + 
Sbjct: 509 QNGKNQVTIYE 519


>gi|161521080|ref|YP_001584507.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia multivorans ATCC 17616]
 gi|160345130|gb|ABX18215.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia multivorans ATCC 17616]
          Length = 776

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 13/177 (7%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQIND 144
             +  ++  L+  D L+GL N       +              +++I+F D+  FK++ND
Sbjct: 340 REAQQQLRYLATRDALTGLYNRRWLSDRMRELFGGRDPAGGPARVAILFLDLVGFKKVND 399

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD ++  ++ +L         + R+GG+EF        + EA  LA   R++I+
Sbjct: 400 TAGHDAGDALLRSVAARLAACMRGRHALTRVGGDEFVILVDDCDDPEA--LAALAREVID 457

Query: 205 N-SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++    +     + +S GI+      +  +T++  AD A+Y AK+ GRN    F+
Sbjct: 458 AIAKPFAVANNEYWLGVSIGISIAPRDGDDAATLMRNADSAMYDAKQRGRNHFTFFT 514


>gi|146282332|ref|YP_001172485.1| sensory box protein [Pseudomonas stutzeri A1501]
 gi|145570537|gb|ABP79643.1| sensory box protein/GGDEF domain protein [Pseudomonas stutzeri
           A1501]
          Length = 886

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 13/213 (6%)

Query: 64  ILVENLSLVIISITISLLLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  E L++  +      +  Y++  + + +   +  RI  L+  D L+GL N    +  L
Sbjct: 406 IFPEWLTISAVRNVHGEVTHYVAAFTDITDRKAAEERIHNLAFYDPLTGLPNRRLLLDRL 465

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     N+  +++F D+D FK IND  GH  GD+V+   +++L         V RL
Sbjct: 466 HQAMAVSRRSNQLGALMFIDLDNFKNINDLHGHQTGDQVLRVAAERLHAEVRASDMVARL 525

Query: 176 GGEEFAAAA--LGSSEQEAAILANDLRKIIENSQINISSGPSIHI--TISAGIAERCHKE 231
           GG+EF      LG     AA  A  +   + NS         + +  + S G+     + 
Sbjct: 526 GGDEFVVMLENLGDDPLRAAAQAEHIGMKLLNSLDRSYRLNELGLYSSASIGVVLFGGEA 585

Query: 232 -PISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                ++ RAD ++Y AK SG+N +  F     
Sbjct: 586 CSSDELMKRADMSMYEAKISGKNALRFFDPRMQ 618


>gi|160899486|ref|YP_001565068.1| diguanylate cyclase [Delftia acidovorans SPH-1]
 gi|160365070|gb|ABX36683.1| diguanylate cyclase [Delftia acidovorans SPH-1]
          Length = 416

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 84/186 (45%), Gaps = 11/186 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           L  +      +L      + ++S  D L+G LN  A    L             LS++F 
Sbjct: 228 LDLLVAQRTAQLEELVEEVKRMSLTDALTGCLNRRAMDERLASEVAQGQRLGAALSVMFV 287

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP---MFVGRLGGEEFAAAALGSSEQE 191
           D+D FKQ+ND  GH  GD V+  ++ +            ++ R GGEEF     G +  +
Sbjct: 288 DVDRFKQVNDRHGHAAGDAVLREVALRCRHALEREPSAQWMARYGGEEFLIVMPGVAAAQ 347

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A  LA  LR+ I ++ I +  G  +  T S G+A+    E    ++ RAD  LY AK +G
Sbjct: 348 AWALAGQLREAIRSTPIQVH-GLELAATASFGVAQLQGAESAQELLQRADAMLYEAKHAG 406

Query: 252 RNRVVC 257
           R+ V  
Sbjct: 407 RDCVRV 412


>gi|315179714|gb|ADT86628.1| Signaling protein with a sensor domain, CHASE, GGDEF and EAL
           domains [Vibrio furnissii NCTC 11218]
          Length = 736

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 103/229 (44%), Gaps = 14/229 (6%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN- 98
           A V+    I   +  +        I +    ++   + ++  +   +    +E+      
Sbjct: 510 AYVMHTGFILSSWYWIYLLLSTGVIAIGLYRILTHRVQVTKAVSDATEHWQQEVERRQEV 569

Query: 99  -RISQ-LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
             + + L+  D L+GL N   F       ++   +  +  ++ + D+D FK +ND++GH 
Sbjct: 570 VELERRLATQDELTGLANRRHFYDLAHDHLAQARAQGQPFTLYYMDLDGFKDVNDSYGHS 629

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD+V+  ++ +L         V R GG+EF A    +   +    +  + + I ++ I 
Sbjct: 630 MGDEVLKVVAHRLQNSVRAQDIVARFGGDEFVAILRNTD-DDCFYKSQQIIEAI-SAPIV 687

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I   P++ I IS G A    H E I  ++ +AD ALY AK+ G+N +V 
Sbjct: 688 IDGSPAL-IGISIGAAVYPTHGETIEALLVKADSALYQAKRRGKNCLVV 735


>gi|303242086|ref|ZP_07328577.1| diguanylate cyclase [Acetivibrio cellulolyticus CD2]
 gi|302590380|gb|EFL60137.1| diguanylate cyclase [Acetivibrio cellulolyticus CD2]
          Length = 376

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 114/251 (45%), Gaps = 16/251 (6%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE----NLSLVIISITISLLL 82
            ++ F I +      +  I NI +F I +   + L +        N   +I      L+ 
Sbjct: 109 IVLLFIIAYYGISRDIASIVNITIFTITVYSVFTLGFERNRLNEFNYWRLITRDLFMLIT 168

Query: 83  GYISGSILKELF---ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
            Y    ++ E+      + R  +L+R D L+GL N   F   L           + L+++
Sbjct: 169 AYAVSIVITEVKKYDEMHKREFKLARTDKLTGLANRHYFDQKLEEEALYADYARQPLNVL 228

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            FDID FK+ ND +GH  GDK+++   D ++          R GGEEF         +  
Sbjct: 229 MFDIDNFKKFNDTYGHIWGDKLLSMFGDIVMQNIRKTDIPVRYGGEEFIVLIGDLDLEMV 288

Query: 193 AILANDLRKIIENSQINISSGPS-IHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
             + + +R  +E   +N+ S  +   +T+S GIA+   H + I  +I  AD+ALY AK+ 
Sbjct: 289 KSIGDRIRGQLEKQNLNMGSEHTKCKVTVSCGIAQYPTHSKDIKEVIDFADKALYYAKEI 348

Query: 251 GRNRVVCFSDI 261
           G+N VV + +I
Sbjct: 349 GKNIVVSYDEI 359


>gi|254521531|ref|ZP_05133586.1| diguanylate cyclase (ggdef domain) with gaf sensor
           [Stenotrophomonas sp. SKA14]
 gi|219719122|gb|EED37647.1| diguanylate cyclase (ggdef domain) with gaf sensor
           [Stenotrophomonas sp. SKA14]
          Length = 356

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/203 (31%), Positives = 91/203 (44%), Gaps = 17/203 (8%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKE----LFISYNRISQLSRIDCLSGLLNHSAFI 119
           +LV  L    + I   +L       +L E    L      +++ SR D L+GL N  A  
Sbjct: 156 MLVMELRRFALDIQKHMLERDDYERLLSEYQDVLLAQNADLAEQSRTDALTGLPNRRAMA 215

Query: 120 SSLGSY-----NEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           ++L         +  +  +   DID+FK IND  GH  GD+V+A L   L   F      
Sbjct: 216 AALEEAVAMNGAQPGAACVALLDIDHFKHINDFQGHATGDRVLAELGTLLRTHFAGRGMA 275

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232
            R GGEEF A    +  + A      LR  +    +         +TIS G+A+    E 
Sbjct: 276 ARYGGEEFVAVMPATDLRAAERQCEFLRLAVAELPLGFP------VTISIGVAQHQSGES 329

Query: 233 ISTIIYRADQALYVAKKSGRNRV 255
           +  ++ RAD+ALY AK +GRNRV
Sbjct: 330 VDQMLARADKALYRAKGNGRNRV 352


>gi|148358169|ref|YP_001249376.1| GGDEF/EAL domain-containing sensory box protein [Legionella
           pneumophila str. Corby]
 gi|148279942|gb|ABQ54030.1| sensory box (GGDEF/EAL domain) regulatory protein [Legionella
           pneumophila str. Corby]
          Length = 972

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 11/183 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + +       +   +  D L+ L N    ++ L          N+KL+++F D+D FKQ
Sbjct: 532 DVTQKKSYEEMLKHQATFDNLTNLPNRLYAVNKLERAISKSHINNQKLAVLFLDLDEFKQ 591

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           IND+ GH +GD ++  LS++ + +      + RLGG+EF         +++A  +A   R
Sbjct: 592 INDSLGHAIGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILENIMQDKDAESIAKKCR 651

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +I   SQ  +     + ++ S GIA    H +   T++  AD A+Y +K  G+N    F 
Sbjct: 652 EIC--SQPFVIESQELLVSTSIGIAIYPDHGKDAKTLMRNADTAMYQSKIRGKNNWTVFQ 709

Query: 260 DIE 262
              
Sbjct: 710 KTM 712


>gi|33594381|ref|NP_882025.1| hypothetical protein BP3507 [Bordetella pertussis Tohama I]
 gi|33564456|emb|CAE43767.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332383792|gb|AEE68639.1| hypothetical protein BPTD_3456 [Bordetella pertussis CS]
          Length = 475

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 75/159 (47%), Gaps = 7/159 (4%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+ LLN           ++        LS++  DIDYFK IND  GH  GD V+  +
Sbjct: 296 RDTLTRLLNRKYLHVVLSKEVAYARKTGVPLSVLVADIDYFKSINDAHGHDAGDFVLQQV 355

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  +        +  RLGGEEF    + +   +A  +A  LR+ I+     +  G  + +
Sbjct: 356 ASLIASYSRGGDYTFRLGGEEFLVVLVDADGTQALNVAEALRRRIQEKATVLPDGGEVRL 415

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           T+S G+A          ++ RADQALY AK  GRNR V 
Sbjct: 416 TLSIGVAAHDRHPDYQRLLKRADQALYAAKSGGRNRCVL 454


>gi|119775740|ref|YP_928480.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B]
 gi|119768240|gb|ABM00811.1| GGDEF domain protein [Shewanella amazonensis SB2B]
          Length = 524

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/264 (26%), Positives = 107/264 (40%), Gaps = 26/264 (9%)

Query: 15  HEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE-----NL 69
           H+ ++ SF     ++ F+ F       V+ + ++ L    LTP   +  +LV+      L
Sbjct: 253 HKSDIPSFISRESILIFATFM-----VVVLLGSVPLSLFVLTPLGNINRVLVKMTTRGRL 307

Query: 70  SLVIISITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE 127
           + +  S  I  L  L      + + L    N +  LS  D L+G+ N     +     ++
Sbjct: 308 TKINQSFFIDELHRLTGSFNQLAEMLERHQNYLESLSFKDPLTGIANRRGLEAFASRAHQ 367

Query: 128 K-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEE 179
           +       L  +  D+D FKQ ND  GH  GDK +  ++  L+         V R GGEE
Sbjct: 368 EWLDGKGALGFLMVDVDEFKQYNDTQGHTAGDKALISVAQTLLIECRRRGELVTRFGGEE 427

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH------KEPI 233
           F     G    +   LA  +   +    I   SG   H+TIS G     H          
Sbjct: 428 FCVVVHGDDTLQMERLAERMLHRVRELAITHPSGQFGHVTISVGGVLFEHYDPQFADTSW 487

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
             ++  AD+ LY+AK  GRNRV  
Sbjct: 488 QDMLVMADKQLYLAKSEGRNRVCV 511


>gi|316931601|ref|YP_004106583.1| PAS/PAC sensor -containing diguanylate cyclase/phosphodiesterase
           [Rhodopseudomonas palustris DX-1]
 gi|315599315|gb|ADU41850.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris DX-1]
          Length = 840

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 14/194 (7%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLS 130
           I+ L+G  +   + E   +  R+ QL+  D L+GL N + F   L        S +E+ +
Sbjct: 381 ITGLIG--TAQDVTERKDAERRLEQLAYTDPLTGLANRALFKRQLVDLFEKPISESEQNA 438

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSS 188
           ++  D+D FK++ND+ GH  GD ++  ++  L        F+ R+GG+EFA    +  +S
Sbjct: 439 LLLIDLDRFKEVNDSLGHSTGDALLIHVAGVLRQELDPQAFIARIGGDEFAVLTNSPTTS 498

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVA 247
            +    LA+ L   + +  + ++ G +  I  + GIA    H          AD ALY+A
Sbjct: 499 AEATTALADRLIAKL-SIPVELAEGEAC-IGATIGIAILPEHGATAEKASRNADLALYMA 556

Query: 248 KKSGRNRVVCFSDI 261
           K++GR R + F  I
Sbjct: 557 KEAGRGRALLFEPI 570


>gi|207738818|ref|YP_002257211.1| signal transduction protein [Ralstonia solanacearum IPO1609]
 gi|206592186|emb|CAQ59092.1| signal transduction protein [Ralstonia solanacearum IPO1609]
          Length = 782

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 13/186 (6%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----------NEKLSI 131
           G +    +     +  RI+  +  D L+GLLN   F ++L +               L++
Sbjct: 596 GVVVLRDVSATRETVQRIAWDATHDVLTGLLNRRGFDATLRAQVEAHRGTRAAPRTPLAL 655

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  D+D FK IND +GH  GD V+  +++++V    T     RLGG+EFA        Q 
Sbjct: 656 LMIDLDGFKAINDCYGHAAGDDVLRGIAERVVQNTRTQDHAARLGGDEFAVILPNCDLQT 715

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
           A   A+ +R  +    + +++G    I +S G+ E        +  + R D A Y AK  
Sbjct: 716 AVTFADRIRAALARQPV-LAAGARAQIALSQGVVELQADDADAAAFLARVDAACYRAKSE 774

Query: 251 GRNRVV 256
           GRN + 
Sbjct: 775 GRNTIA 780


>gi|326203562|ref|ZP_08193426.1| diguanylate cyclase/phosphodiesterase [Clostridium papyrosolvens
           DSM 2782]
 gi|325986382|gb|EGD47214.1| diguanylate cyclase/phosphodiesterase [Clostridium papyrosolvens
           DSM 2782]
          Length = 856

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 83/184 (45%), Gaps = 9/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
           I K L  S  + + L+  D L+GL N  + +            +KL+++F D+D FK IN
Sbjct: 419 IQKSLTQSEEKYTYLALHDILTGLPNRRSLLEDSDRLLEGNSGKKLALLFIDMDNFKYIN 478

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD++I   S +L         + RL G+EF         +        + +I+
Sbjct: 479 DTMGHEFGDELINKASQRLKTALKDFGILYRLSGDEFILLIHDIENK--FKAEEFMCQIL 536

Query: 204 ENSQINISSGPSI-HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E+ +       S+ HIT S G A    H   I  +I  AD A+Y AK+ G+NR V +   
Sbjct: 537 ESFKDEFEIRNSVLHITFSIGAALYPDHGNRIEDLIKCADIAMYKAKEQGKNRYVLYDKD 596

Query: 262 ENNT 265
            +  
Sbjct: 597 MDKA 600


>gi|325916725|ref|ZP_08178982.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325537074|gb|EGD08813.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 789

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 82/184 (44%), Gaps = 12/184 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           E   +  R+ QL+  D L+GL N   F +             E  +++F +ID FK IND
Sbjct: 351 EREQTRQRVHQLAFYDALTGLPNRIMFSARAEQALTQAEYAAEPAALMFINIDRFKLIND 410

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH  GD ++  ++ ++         + R+ G+EFA A    S ++A   A  L   I 
Sbjct: 411 SQGHSAGDGLLRDVALRIGEQLAATAMLARVAGDEFALALPQCSAEQATAAAERLLGSIS 470

Query: 205 NSQINISSGP-SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +    +  G  ++H + S G+A        I+ ++  AD A+  AKK G  R   FS   
Sbjct: 471 S---PLPVGHMTVHPSASIGVAMFPEDGRDINILLRHADLAMNRAKKEGGGRFRFFSSDM 527

Query: 263 NNTC 266
           N   
Sbjct: 528 NRMA 531


>gi|297519769|ref|ZP_06938155.1| putative diguanylate cyclase [Escherichia coli OP50]
          Length = 297

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 22/258 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LV 66
            + +WL        F+   + I+  +    F A +  I+ +F+    ++ +Y    I +V
Sbjct: 44  MIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVV 103

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             L++++I +            I   L ++ N    ++  D L+ + N + F + L    
Sbjct: 104 SKLTVMVIFMC----------HIFSALRVTKN----IAHRDPLTNIFNRNYFFNELTVQS 149

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +      ++  DID+FK++ND +GHPVGD+VI  + + +         + R+GGEEF 
Sbjct: 150 ASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFG 209

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYR 239
                   + A  LA  +R+ +E    +         +TIS G +  + +    + I   
Sbjct: 210 VLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRL 269

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK++GRN+VV 
Sbjct: 270 ADNALYEAKETGRNKVVV 287


>gi|226939876|ref|YP_002794949.1| hypothetical protein LHK_00948 [Laribacter hongkongensis HLHK9]
 gi|226714802|gb|ACO73940.1| GGDEF domain protein [Laribacter hongkongensis HLHK9]
          Length = 333

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 84/186 (45%), Gaps = 17/186 (9%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFK 140
            ++ ++L  S +++ Q +  D L+GL+    F + LG +           I+  DID+FK
Sbjct: 134 QTMREQLAQSLSQLDQ-ANHDALTGLMTRRIFFNQLGDWLTMNLARRGAYILMADIDHFK 192

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH  GD VI  ++D L           R GGEEF           A  +A  +R
Sbjct: 193 AINDTHGHIAGDAVIRTVADCLRAELRADDLSCRFGGEEFCVLIPTGQTANAVAMAERIR 252

Query: 201 KIIENSQINISSGPSIHITISAGIAE---------RCHKEPISTIIYRADQALYVAKKSG 251
           +  EN+         I   IS G+A          R  ++ +  ++  ADQALY AK++G
Sbjct: 253 RRCENTPAVFRD-RVIPFRISIGLAPVPTEGAQGIRPDEKWVEHLLEDADQALYEAKRTG 311

Query: 252 RNRVVC 257
           RNR   
Sbjct: 312 RNRTCM 317


>gi|91792302|ref|YP_561953.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91714304|gb|ABE54230.1| GGDEF domain [Shewanella denitrificans OS217]
          Length = 335

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 78/177 (44%), Gaps = 11/177 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQI 142
           L      Y  + +L+R D L+ L N  AF   L    +        LS+V  D+DYFK  
Sbjct: 155 LSSHKAEYKELRRLARTDSLTQLANRHAFDEVLQRNWQECVSHGLPLSLVIIDVDYFKSF 214

Query: 143 NDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND  GH  GD+ +  ++  +            R GGEEFA    G +   A   A  +++
Sbjct: 215 NDAHGHVQGDECLKRIAQVIQAALPSRHCLAARYGGEEFALILPGCNAHIAEATAMRVQQ 274

Query: 202 IIENSQINISS-GPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
            I            S+ I++S GIA   + +    + ++  AD ALY AK  GR+R+
Sbjct: 275 QINKLSFTAQGLDASVKISVSQGIACERNGQFRTPTALLCAADTALYRAKSDGRDRI 331


>gi|83748361|ref|ZP_00945385.1| Sensory transduction protein kinase [Ralstonia solanacearum UW551]
 gi|83724983|gb|EAP72137.1| Sensory transduction protein kinase [Ralstonia solanacearum UW551]
          Length = 816

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 13/186 (6%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----------NEKLSI 131
           G +    +     +  RI+  +  D L+GLLN   F ++L +               L++
Sbjct: 630 GVVVLRDVSATRETVQRIAWDATHDVLTGLLNRRGFDATLRAQVEAHRGTRAAPRTPLAL 689

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  D+D FK IND +GH  GD V+  +++++V    T     RLGG+EFA        Q 
Sbjct: 690 LMIDLDGFKAINDCYGHAAGDDVLRGIAERVVQNTRTQDHAARLGGDEFAVILPNCDLQT 749

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
           A   A+ +R  +    + +++G    I +S G+ E        +  + R D A Y AK  
Sbjct: 750 AVTFADRIRAALARQPV-LAAGARAQIALSQGVVELQADDADAAAFLARVDAACYRAKSE 808

Query: 251 GRNRVV 256
           GRN + 
Sbjct: 809 GRNTIA 814


>gi|84387275|ref|ZP_00990296.1| c-di-GMP phosphodiesterase A-related protein [Vibrio splendidus
           12B01]
 gi|84377922|gb|EAP94784.1| c-di-GMP phosphodiesterase A-related protein [Vibrio splendidus
           12B01]
          Length = 679

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+ L N   F   L  + +    + +++ DID FK IND+ GH +GDKVI  ++ 
Sbjct: 253 AYIDALTKLYNRVGFTKRLEQFIQNDTPVVMLYLDIDNFKNINDSLGHHIGDKVIKEVAS 312

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHIT 219
           +L  +      +G LGG+EF         Q    +LA  +  +I  +Q       S  + 
Sbjct: 313 RLKRLLPRQAVIGHLGGDEFGIILPEPEHQRTPEMLAEKIISLI--NQPFDLHHFSKRLA 370

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G ++          ++  AD A+Y AK  GRNR++ F++  N   
Sbjct: 371 CSIGSVSFPQDGTDARILLQNADTAMYEAKDRGRNRLIKFNEQMNKEA 418


>gi|148258750|ref|YP_001243335.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
 gi|146410923|gb|ABQ39429.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
          Length = 690

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 105/245 (42%), Gaps = 13/245 (5%)

Query: 32  SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK 91
           S+  ++ I ++ F     L    +         L ++L L+ I   I L++   + + + 
Sbjct: 178 SLAMALAILSLHFTGMAALTVAPMAGLDTPAQALPDSLLLISIVTGIGLIMAMAASAYMI 237

Query: 92  ELFISYNRIS---QLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQI 142
           ++  +   +    QL+  D L+GL N +     L            L ++  D+D FK I
Sbjct: 238 DMQAAQEAVEGYRQLALQDPLTGLPNRNGLGHRLAPLLATGDETAHLVVLAIDLDRFKDI 297

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRK 201
           ND  GH  GD V+  +++++        F+ R+GG+EF A      +  EAA  A+ +R 
Sbjct: 298 NDAHGHAAGDAVLKTVAERIAATLQRGEFLARIGGDEFVAVKSEIFARTEAAKFADRIRS 357

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++           S+ +  S GIA    H      ++ RAD A+Y AK  G+ ++  +  
Sbjct: 358 LV--LAPVDWEERSLSVGCSIGIALHPEHGLTSDELLTRADLAMYRAKSLGQGKICTYEP 415

Query: 261 IENNT 265
             +  
Sbjct: 416 SMDEA 420


>gi|332279786|ref|ZP_08392199.1| diguanylate cyclase [Shigella sp. D9]
 gi|332102138|gb|EGJ05484.1| diguanylate cyclase [Shigella sp. D9]
          Length = 320

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 22/258 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LV 66
            + +WL        F+   + I+  +    F A +  I+ +F+    ++ +Y    I +V
Sbjct: 67  MIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVV 126

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             L++++I +            I   L ++ N    ++  D L+ + N + F + L    
Sbjct: 127 SKLTVMVIFMC----------HIFSALRVTKN----IAHRDPLTNIFNRNYFFNELTVQS 172

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +      ++  DID+FK++ND +GHPVGD+VI  + + +         + R+GGEEF 
Sbjct: 173 ASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFG 232

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYR 239
                   + A  LA  +R+ +E    +         +TIS G +  + +    + I   
Sbjct: 233 VLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRL 292

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK++GRN+VV 
Sbjct: 293 ADNALYEAKETGRNKVVV 310


>gi|320323918|gb|EFW80002.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320328055|gb|EFW84060.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 523

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 101/215 (46%), Gaps = 14/215 (6%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILK----ELFISYNRISQLSRIDCLS 110
             P++   +  +    ++I+++ +  +L Y     L     EL I+ N +  ++  D L+
Sbjct: 287 FAPWWAYAHRSMTITGIIILALVLLGVLLYRQIQQLINAEGELNIARNELEIIAHTDSLT 346

Query: 111 GLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL- 162
            L N   F ++L     +       ++I+  DID+FKQ ND +GH  GD  +  ++  + 
Sbjct: 347 HLANRRCFDAALQQEWGRASRNTATIAIILLDIDWFKQYNDTYGHLQGDDCLKQVAGLIG 406

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             +        R GGEEF      +    A  +A  +R  +E ++I  S+ P   +TIS+
Sbjct: 407 NSLDRAGDIAARYGGEEFVILLPETDLAGALKIAEKIRSSVETNRIEHSASPLGKLTISS 466

Query: 223 GIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G+       K+  +  +  AD+ LY+AK  GRNRV
Sbjct: 467 GVVSINAAEKDGHTAALAEADRLLYLAKTRGRNRV 501


>gi|313681961|ref|YP_004059699.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154821|gb|ADR33499.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
          Length = 571

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 93/185 (50%), Gaps = 11/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            +++   +   I  L++ D L+ L N + F   L S        ++   +++ D+D FK 
Sbjct: 130 DIQDRKTTEEHIRHLAKFDPLTNLPNRNFFRDELESRINQANSSSQYFGLLYIDLDRFKM 189

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILANDLR 200
           +ND+ GH VGD+++  L+++   +     F+ RLGG+EFA   AL  S++   + A ++ 
Sbjct: 190 VNDSLGHTVGDRLLQKLAERFTSINEQNHFIVRLGGDEFAVITALVDSKKTVEMFAKNVH 249

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + I+     +     I++T S GIA      E    +I  AD A+Y AK +G+N  + F 
Sbjct: 250 EAIKT--PFVIDNNDIYMTASIGIALYPQDGENSELLIKAADMAMYGAKINGKNTYLFFE 307

Query: 260 DIENN 264
             + +
Sbjct: 308 PTKGD 312


>gi|170020179|ref|YP_001725133.1| diguanylate cyclase [Escherichia coli ATCC 8739]
 gi|312971654|ref|ZP_07785829.1| diguanylate cyclase domain protein [Escherichia coli 1827-70]
 gi|169755107|gb|ACA77806.1| diguanylate cyclase [Escherichia coli ATCC 8739]
 gi|310336251|gb|EFQ01451.1| diguanylate cyclase domain protein [Escherichia coli 1827-70]
 gi|323937458|gb|EGB33735.1| GGDEF domain-containing protein [Escherichia coli E1520]
          Length = 460

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 281 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 339 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 399 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 456


>gi|77918829|ref|YP_356644.1| GGDEF domain-containing protein [Pelobacter carbinolicus DSM 2380]
 gi|77544912|gb|ABA88474.1| diguanylate cyclase [Pelobacter carbinolicus DSM 2380]
          Length = 517

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 11/182 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDY 138
           S   + +L  +   + +L+  D L+GL N   F+       +    Y   LS+VFFD+D+
Sbjct: 333 SQQCINKLLDANKSLRKLAYRDELTGLYNQRFFLTEMDKELARAKRYGYSLSLVFFDVDF 392

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND  GH  GD V+  +S ++     +   V R GG+EFA     + + + AI    
Sbjct: 393 FKNINDTHGHLAGDAVLRHVSAKVTSCVRSCDTVVRYGGDEFAIIMPETDQGDLAIFTER 452

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255
           LR  +E   + + +G +I +TIS G      ++   T   ++  ADQA+Y +KK GRN V
Sbjct: 453 LRFEVEKMLVPM-NGKTIAVTISIGGTSFDGRDESVTRYVLLNVADQAIYQSKKLGRNTV 511

Query: 256 VC 257
             
Sbjct: 512 TI 513


>gi|85374282|ref|YP_458344.1| sensory box/GGDEF family protein [Erythrobacter litoralis HTCC2594]
 gi|84787365|gb|ABC63547.1| sensory box/GGDEF family protein [Erythrobacter litoralis HTCC2594]
          Length = 740

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/196 (26%), Positives = 87/196 (44%), Gaps = 12/196 (6%)

Query: 81  LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           LLGY  S   +  +  +   + ++++ D L+GL N       L        +     +++
Sbjct: 143 LLGYRGSAKDITAVRQNQLEVGRMAQYDSLTGLANRHRMTKRLTTTLTAYKAAKRSCALM 202

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D FKQ+ND  GHP GD+++  +  +L  + G    +GRLGG+EF        ++  
Sbjct: 203 MLDLDRFKQVNDTLGHPAGDELLKQVGQRLERIIGGNGEIGRLGGDEFQVILPDIEDRGR 262

Query: 193 A-ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250
              +A  + ++I  SQ     G    I  S GIA   +       ++  AD ALY AK  
Sbjct: 263 LGEVAARVIQMI--SQPYSIDGARAIIGTSVGIAIAPYDGIDTEELVGAADLALYAAKGG 320

Query: 251 GRNRVVCFSDIENNTC 266
           GR +   +S    +  
Sbjct: 321 GRGQYRFYSSELKDGA 336


>gi|296105527|ref|YP_003617227.1| sensory box (GGDEF/EAL domain) regulatory protein [Legionella
           pneumophila 2300/99 Alcoy]
 gi|295647428|gb|ADG23275.1| sensory box (GGDEF/EAL domain) regulatory protein [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 976

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 11/183 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + +       +   +  D L+ L N    ++ L          N+KL+++F D+D FKQ
Sbjct: 536 DVTQKKSYEEMLKHQATFDNLTNLPNRLYAVNKLERAISKSHINNQKLAVLFLDLDEFKQ 595

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           IND+ GH +GD ++  LS++ + +      + RLGG+EF         +++A  +A   R
Sbjct: 596 INDSLGHAIGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILENIMQDKDAESIAKKCR 655

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +I   SQ  +     + ++ S GIA    H +   T++  AD A+Y +K  G+N    F 
Sbjct: 656 EIC--SQPFVIESQELLVSTSIGIAIYPDHGKDAKTLMRNADTAMYQSKIRGKNNWTVFQ 713

Query: 260 DIE 262
              
Sbjct: 714 KTM 716


>gi|260554189|ref|ZP_05826447.1| WspR [Acinetobacter sp. RUH2624]
 gi|260404695|gb|EEW98207.1| WspR [Acinetobacter sp. RUH2624]
          Length = 409

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 84/177 (47%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL     ++S LS+ D L+GL N      +L         +   L+I+  DID+FK  ND
Sbjct: 222 ELMQQAQQLSLLSQQDALTGLANRRYLDETLDNEWRRALRHETPLTIMMVDIDFFKPYND 281

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GH  GD+ +  ++  +  +   +   V R GGEEF      ++ Q+A I    L   I
Sbjct: 282 TLGHLKGDQCLKDIATAISSIAARSGDLVARYGGEEFLLLFPMTNAQQAQIQVERLMNAI 341

Query: 204 ENSQINIS-SGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   I    S  S ++TIS G+A       + IS  + RAD ALY AK +GRN+   
Sbjct: 342 KKIAIVHPCSSVSPYVTISVGVATTIPRLNDSISAFVSRADHALYQAKTNGRNQYQI 398


>gi|222525055|ref|YP_002569526.1| diguanylate cyclase [Chloroflexus sp. Y-400-fl]
 gi|222448934|gb|ACM53200.1| diguanylate cyclase [Chloroflexus sp. Y-400-fl]
          Length = 301

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 80/173 (46%), Gaps = 9/173 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           E    Y  +  L+  D L+G+ N  AF  +L         Y   L+++  DID FK  ND
Sbjct: 118 ENARLYAEVEALAVTDSLTGIANRRAFDRALEREFVRARHYGYPLALIMVDIDSFKHYND 177

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD  +  ++  L        FV R GGEEFA     + +Q A  +A  +R+  E
Sbjct: 178 TYGHLAGDDRLRAVAQLLAQSVREVDFVARYGGEEFAIILTNTDKQTAIAVAEQIRRKAE 237

Query: 205 NSQINISSGPSI-HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
            S     +G  +   T+S G+A      +    ++  AD A   AK++G+NRV
Sbjct: 238 MSCPEPLNGLPVSGYTLSLGVAAFPDDAQTPVALLLAADNAELAAKRAGKNRV 290


>gi|220935159|ref|YP_002514058.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996469|gb|ACL73071.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 958

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 86/188 (45%), Gaps = 10/188 (5%)

Query: 80  LLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSI 131
           L+LG +     + +      ++S  +  D L+GL N   F   L     +        ++
Sbjct: 499 LILGVVLVFHDVSKTRQMARQLSWQATHDALTGLFNRYEFEQRLAQALAQARDRLAHHAV 558

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           ++ D+D FK +ND  GH  GD+++  L+  L+        + RLGG+EF          +
Sbjct: 559 LYMDLDQFKVVNDTCGHSAGDELLKQLAYLLMGKVRESDTLARLGGDEFGVLLENCPLDK 618

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250
           A  +A +LR+ + + + +   G S  I IS G+         ++ ++  AD A Y AK  
Sbjct: 619 AREIAQELRQTVRDFRFSWK-GKSFQIGISIGLVMISDGNLDLAEVLSAADMACYAAKDL 677

Query: 251 GRNRVVCF 258
           GR+R+  +
Sbjct: 678 GRDRIHVY 685


>gi|170076623|ref|YP_001733262.1| diguanylate cyclase [Synechococcus sp. PCC 7002]
 gi|169887485|gb|ACB01193.1| diguanylate cyclase (GGDEF) domain protein [Synechococcus sp. PCC
           7002]
          Length = 698

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 17/223 (7%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL---KELFISYNRI--SQLSR 105
           + + + P   L +        ++++I + LLL   S  +L   +EL      +  S  + 
Sbjct: 476 WQLQIQPTEALIWAKKSYTPQLVLTIALILLLFNESFLLLVTAEELAERRQAVINSYQAS 535

Query: 106 IDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+ LLN  AF ++L     +         ++F D+D+FK +ND  GH  GD ++  +
Sbjct: 536 HDPLTDLLNRRAFFATLEQARSEANSGLASHVLLFCDLDHFKPVNDTVGHNAGDVLLRDI 595

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         V R+GG+EFA      + +    +A  +  +++N            I
Sbjct: 596 AHLLAQQVRAEDQVARVGGDEFALLLRNCTLENGLSIAEAIVSVLKNYTFTWQQEI-FQI 654

Query: 219 TISAGI----AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           TIS G+    +E      +  ++ +ADQA Y AK+SGRN+V  
Sbjct: 655 TISIGLILLTSESAPLPSVDDLMAQADQACYRAKRSGRNQVCV 697


>gi|78044643|ref|YP_360678.1| GGDEF domain-containing protein [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996758|gb|ABB15657.1| GGDEF domain protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 217

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 11/190 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y L ++  L+     +  ++  I  S+L      +  +S  +  D L+GL N + F   L
Sbjct: 25  YFLKKDGDLIWNFFLMFQVIWAIGLSLL------FKEVSVQANTDALTGLFNRNYFNEKL 78

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   +S++  D+D FK IND +GH  GD V+  +++ L  V      + R GG+EF
Sbjct: 79  YNIKTKGPISLILLDLDNFKNINDLYGHLAGDTVLQKVAEILKNVTRKVDIIVRWGGDEF 138

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIY 238
           A     ++EQEA  +A  ++  IEN          + I++S GIA     +      +  
Sbjct: 139 AVVLWETTEQEALNIAQRIKTQIENYDFVFGQS-RVRISVSIGIASMQESDLNDKDQLFK 197

Query: 239 RADQALYVAK 248
            AD+ALY+AK
Sbjct: 198 TADEALYLAK 207


>gi|54293995|ref|YP_126410.1| hypothetical protein lpl1054 [Legionella pneumophila str. Lens]
 gi|53753827|emb|CAH15290.1| hypothetical protein lpl1054 [Legionella pneumophila str. Lens]
 gi|307609821|emb|CBW99338.1| hypothetical protein LPW_11161 [Legionella pneumophila 130b]
          Length = 506

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 91/179 (50%), Gaps = 11/179 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           LK+L     ++S+L+  D LS L N   F       I+    Y   L+++  D+D+FK +
Sbjct: 61  LKDLERVQKKLSKLAHFDVLSRLPNRLQFELDLKREIARSKRYGRHLALLSIDLDFFKNV 120

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRK 201
           ND FGH VGD ++  ++ +L         V RLGG+EFA       + Q+A ++AN++ +
Sbjct: 121 NDRFGHDVGDGLLREVAKRLCSSLREEDCVARLGGDEFAVILTEINNPQQAKLVANNMIQ 180

Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +   +     G ++ I IS GIA      +   T+   AD ALY AK+ GRN    F+
Sbjct: 181 KM--GKPFHIKGHTVMIGISIGIAYFPDAGDEAITLRKNADIALYNAKECGRNNCQIFT 237


>gi|300783795|ref|YP_003764086.1| GGDEF domain-containing diguanylate cyclase [Amycolatopsis
           mediterranei U32]
 gi|299793309|gb|ADJ43684.1| GGDEF domain-containing diguanylate cyclase [Amycolatopsis
           mediterranei U32]
          Length = 407

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 84/174 (48%), Gaps = 14/174 (8%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK---------LSIVFFDIDYFKQINDNFGH 148
            ++   +  D  +GLLN + +  S    + +          +++  D+D+FK+IND +GH
Sbjct: 234 QQLQVAAVTDEKTGLLNTAGWHESATREHARVQRRGATGGFAVLMIDLDHFKRINDTYGH 293

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+A ++  +         VGR GGEEF     G    +   +A  +R  +    +
Sbjct: 294 LTGDDVLAAVAVAISGSVRQGDTVGRFGGEEFVVLLPGIGRADVLAIAERVRVAVGELNV 353

Query: 209 NISSGP-SIHI---TISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
            IS+G  ++ +   ++S G+A        +  ++  AD ALY AK++GRNRV  
Sbjct: 354 VISTGTGTVRVSGLSVSIGVARHPDAGPSLDDVLRAADAALYRAKEAGRNRVAV 407


>gi|224542553|ref|ZP_03683092.1| hypothetical protein CATMIT_01737 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524526|gb|EEF93631.1| hypothetical protein CATMIT_01737 [Catenibacterium mitsuokai DSM
           15897]
          Length = 173

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 10/168 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152
           + +LS +D L+GL N     S L +   +        +++  D+D FK  ND +GH  GD
Sbjct: 1   MRRLSDVDGLTGLNNRRYLDSYLETEWRRALREGADFAVLMLDVDNFKLYNDYYGHLAGD 60

Query: 153 KVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           +V+  ++  +   V        R GGEEF      +S   A  LA  +   +    +   
Sbjct: 61  EVLKDVAGVMRRTVQRPADLTARYGGEEFTVVLPATSASGALQLAEQICAGVRALSLPNR 120

Query: 212 SGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + PS  +T+S G+A       E  + ++  AD ALY AK++G++R V 
Sbjct: 121 AAPSGLVTVSIGVAASSPAQGERYAPLLRVADMALYEAKRAGKDRAVY 168


>gi|254501785|ref|ZP_05113936.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
 gi|222437856|gb|EEE44535.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
          Length = 479

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 11/205 (5%)

Query: 71  LVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
           + ++S+T+  L   + +  G + + L  S  +   L+  D LSGL N   F   L +   
Sbjct: 258 IAMLSLTLGALAFGIAWRIGQLTRSLQKSEEQNRYLALHDNLSGLANRLQFNRVLETSTA 317

Query: 126 ---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
              N++ +++  D+D FK +ND +GH  GD VI  ++ +L  V G P  V R+GG+EF  
Sbjct: 318 DLPNKRFAVLHCDLDKFKAVNDTYGHAAGDTVIKIMAKRLNEVVGKPGLVCRIGGDEFMV 377

Query: 183 A-ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRA 240
               G+S ++   L   L        I I  G + H+ +S G+A           ++ R+
Sbjct: 378 IYRGGTSRKDLDTLCRALINK-ALLPIQIEGGNTAHVGLSIGVAVAPADGTEPEDLVARS 436

Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265
           D ALY AK  GR     + D+  +T
Sbjct: 437 DAALYRAKDRGRGVHAFYEDLLKDT 461


>gi|163803361|ref|ZP_02197237.1| sensory box/GGDEF family protein [Vibrio sp. AND4]
 gi|159172823|gb|EDP57665.1| sensory box/GGDEF family protein [Vibrio sp. AND4]
          Length = 271

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 22/201 (10%)

Query: 84  YISGSILKELFISYNRISQ-------LSRIDCLSGLLNHSAFISSLG-------SYNEKL 129
            I    + E +++  ++ Q       LS  D L+ + N   F   L          N  L
Sbjct: 75  LIMARDISERYLAEQKLEQANLELEKLSFSDGLTQVANRRRFDEQLHTLWYHHIRENLPL 134

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSS 188
           SI+  DID+FK  ND +GH  GD+ +  ++     V   +   V R GGEEFA     ++
Sbjct: 135 SIMLCDIDFFKDYNDCYGHQQGDEALIKVAAVFQRVVSRSSDCVARYGGEEFAFILPNTT 194

Query: 189 EQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAE--RCHKEPISTIIYRADQALY 245
            + A  +A  + + I    +    S  S  +T+S G+     CH +     +  AD ALY
Sbjct: 195 TEGALKVAQRVHQQIHELGVEHRGSNTSDRLTVSIGLVSHVPCHGDAPEMGVAMADTALY 254

Query: 246 VAKKSGRNRVVCFSDIENNTC 266
            AK  GR+R    ++I  ++C
Sbjct: 255 QAKADGRDR----TNIHPSSC 271


>gi|83645350|ref|YP_433785.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83633393|gb|ABC29360.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 559

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/214 (26%), Positives = 93/214 (43%), Gaps = 15/214 (7%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
             +YI+ +NL+ ++ +I   L       ++      +   +  ++  D L+ L+N   F 
Sbjct: 101 AHDYIMKDNLARLLPAIQREL----KEATVRDARKRAERTLHHMAYHDSLTDLVNRREFE 156

Query: 120 SSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L S             +++ D+D FK IND  GH  GD+++  L+  L         +
Sbjct: 157 RRLKSALNSSKERGLTHMLLYLDLDQFKIINDTCGHVAGDELLKQLAILLSKHIRESDTL 216

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKE 231
            RLGG+EF       +E+ A  LA +L   + N +      P   I++S GI A      
Sbjct: 217 ARLGGDEFGILLESCAERRAIQLAQELNSEVRNFRFVWQQKP-FTISLSIGIVAVTSEYG 275

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCF--SDIEN 263
             + I+  AD A Y AK  GRN +  +   D+E 
Sbjct: 276 SGAEILSHADIACYAAKDKGRNTIQVYQSDDVEM 309


>gi|323499312|ref|ZP_08104289.1| sensory box/GGDEF family protein [Vibrio sinaloensis DSM 21326]
 gi|323315700|gb|EGA68734.1| sensory box/GGDEF family protein [Vibrio sinaloensis DSM 21326]
          Length = 303

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 88/191 (46%), Gaps = 12/191 (6%)

Query: 73  IISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124
           IIS     ++G I   + + ++     ++++L+  D L+ L N                 
Sbjct: 112 IISRLTGEVIGLIGVSTDITDMVNMRVQLAELANTDELTKLCNRRKLWQFFSSAFNRATQ 171

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
            N  LS +  DID+FKQIND  GH  GD+VI  L+D +          GR+GGEEF    
Sbjct: 172 DNHPLSCILIDIDFFKQINDCHGHDFGDQVIVELADMIRHNLRETDCCGRIGGEEFLIVL 231

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQA 243
             +   EA  +A  LR    NS +N    P    +IS G+ E    +     +  RADQA
Sbjct: 232 DHTHATEAFDIAERLRLAFHNSPLNKPKAP---FSISCGVTELVDNDGDFFALYRRADQA 288

Query: 244 LYVAKKSGRNR 254
           LY AK  GRN+
Sbjct: 289 LYDAKHKGRNQ 299


>gi|297538224|ref|YP_003673993.1| diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297257571|gb|ADI29416.1| diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301]
          Length = 736

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 16/219 (7%)

Query: 58  FYGLEYILVENLSLVIISITISL----LLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
            + +E+I  E  S    ++ + L    L G    S   E   +   +++L+  D L+ L 
Sbjct: 259 IFNVEHIHSELYSHAAFTLKVGLIPMALGGLFVASAFSERHNAEAELNKLANHDPLTSLP 318

Query: 114 NHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N + F   L           +++ ++F D+D FK+IND+ GH +GD V+  ++ +L  + 
Sbjct: 319 NRTYFQQFLTHSLAQAYRQKQQVYLLFIDLDRFKKINDSEGHELGDAVLRLIARRLNEIL 378

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHITISAGIA 225
               FV RLGG+EFA          AA  LA  +  I+  S      G    +  S GI+
Sbjct: 379 RADDFVARLGGDEFAVVYTHPPVNNAASNLARKIIGIVSES--FELEGRRYSVGASIGIS 436

Query: 226 ERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
              +       ++  AD A+Y AK   R+    FS+  N
Sbjct: 437 VYPNDATDAHALLRHADLAMYQAKSK-RSGFEYFSEEMN 474


>gi|259415748|ref|ZP_05739668.1| diguanylate cyclase/phosphodiesterase [Silicibacter sp. TrichCH4B]
 gi|259347187|gb|EEW58964.1| diguanylate cyclase/phosphodiesterase [Silicibacter sp. TrichCH4B]
          Length = 784

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 77/178 (43%), Gaps = 6/178 (3%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPV 150
           L  + +R+ Q S  D L+ L N       L      E +++V  D+D FK+IND  GH  
Sbjct: 344 LQEAKDRLEQQSLSDPLTQLPNRRHLDRELARRLQTESVALVRIDLDRFKKINDILGHEA 403

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILANDLRKIIENSQIN 209
           GD V+  ++D L           R+GG+EF      G++ ++A  LA  + + +   Q  
Sbjct: 404 GDFVLCHVADVLRAHTKAGDVPARVGGDEFVVLCRSGTTLRQAETLAQRVLEAV--LQPV 461

Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
                  +   S G+A         S ++  AD ALY AK SGR  V  F+       
Sbjct: 462 AWGNKRCNFGASFGVAHGEPGTISASELLSNADAALYRAKASGRAAVEVFTPEMRAQA 519


>gi|254457525|ref|ZP_05070953.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207086317|gb|EDZ63601.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 491

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/198 (29%), Positives = 106/198 (53%), Gaps = 11/198 (5%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR---IDCLSGLLNHSAFIS 120
           I++ +++++I+ I   LL+ +I      +L  +Y  I +L      D L+G+ N ++  S
Sbjct: 295 IMLNSINIMILFI-CYLLIYFIFTRYSNKLISAYENIQELEIAVDTDALTGINNRTSLDS 353

Query: 121 SLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
            L +   +  K +I+F DID+FK IND +GH VGD ++  L++ ++       F  R GG
Sbjct: 354 FLKANVKHENKYAIIFLDIDHFKNINDTYGHDVGDTILKELANIILKSIRLDDFFARWGG 413

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EEF      +S Q A  +  ++R+ I ++  +     SI +T S G+      + +  ++
Sbjct: 414 EEFVIVLKTNSIQNAVKITKNIRENIHSTLFH----NSIPVTCSFGVTMIDRPDDLDMVL 469

Query: 238 YRADQALYVAKKSGRNRV 255
            RAD+ LY AK +GR+ +
Sbjct: 470 KRADKLLYDAKDAGRDCI 487


>gi|253699554|ref|YP_003020743.1| diguanylate cyclase with PAS/PAC sensor [Geobacter sp. M21]
 gi|251774404|gb|ACT16985.1| diguanylate cyclase with PAS/PAC sensor [Geobacter sp. M21]
          Length = 297

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 8/173 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHS----AFISSL---GSYNEKLSIVFFDIDYFKQIND 144
           ++  +  ++ Q   +D L+G+ N      +  S L    ++     ++F D+D+FK +ND
Sbjct: 125 QILAALEQLKQDVLVDPLTGVGNRRLADMSLESRLHDWQTHRRPFGVLFMDVDHFKSVND 184

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+V+  L   +   F     V R GGEEF A    +     A +A  +R  + 
Sbjct: 185 RYGHKTGDEVLRMLGKTISNTFRKVDTVARWGGEEFVAILPATRLPALASIAERVRSAVA 244

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            S   +  G  + +T+S G       +   +II RAD  +Y +K  GRN V  
Sbjct: 245 GS-FLMEEGQRVGVTLSIGGTIAETGDNAESIISRADAQMYRSKAGGRNLVTL 296


>gi|162147651|ref|YP_001602112.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209542280|ref|YP_002274509.1| PAS/PAC sensor-containing diguanylate cyclase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786228|emb|CAP55810.1| putative signalling protein, GGDEF family [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209529957|gb|ACI49894.1| diguanylate cyclase with PAS/PAC sensor [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 602

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/171 (35%), Positives = 90/171 (52%), Gaps = 7/171 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVF----FDIDYFKQINDNF 146
           +++  +Y    Q +  D L+GL N  AF   L       S V      D+D+FK IND +
Sbjct: 422 RQIAAAY---EQAANTDELTGLPNRRAFFQVLDGQMAAASSVVAAAMLDLDHFKSINDKY 478

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GHP+GD V+  ++  +         V R+GGEEFA      S   A  L   + + +   
Sbjct: 479 GHPIGDIVLRRVATVVRATLRDTDMVARIGGEEFAVLITSESRDRAISLIRRVVRAVSAE 538

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I++ +G  + +TISAGIA R   E  + ++ RADQALYVAK++GRNR+  
Sbjct: 539 SIDLPTGVRLQVTISAGIACREAGEDRNALMSRADQALYVAKRTGRNRLTI 589


>gi|42525644|ref|NP_970742.1| GGDEF domain-containing protein [Treponema denticola ATCC 35405]
 gi|41815655|gb|AAS10623.1| GGDEF domain protein [Treponema denticola ATCC 35405]
          Length = 371

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 12/179 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----------NEKLSIVFFDIDYF 139
           L  + I+ +++ +++  D ++ L     F + L  +           E LSI+  DID+F
Sbjct: 186 LAAIAINNSQLLEMTTTDIMTHLKLKHYFFTLLMEHLYTINSSGEKKETLSILMIDIDFF 245

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND +GH  GD V+  ++  +           R GGEEF      +S   A  +A  +
Sbjct: 246 KNINDTYGHAAGDIVLEEVAKIIKSCTRNADTAARYGGEEFIVMLNNTSASAAMAVAERI 305

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           RK +E   I +  G  I++TIS G++      E   +I+ RAD+ALY +K++GRNRV  
Sbjct: 306 RKSVEEKSI-MYDGKKINVTISIGVSSYNFDLESAKSIVERADKALYESKQNGRNRVTL 363


>gi|189500280|ref|YP_001959750.1| diguanylate cyclase [Chlorobium phaeobacteroides BS1]
 gi|189495721|gb|ACE04269.1| diguanylate cyclase [Chlorobium phaeobacteroides BS1]
          Length = 436

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 12/195 (6%)

Query: 82  LGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
           +  I+ SI++    + +   ++ +L   D  + L N+  F       ++    ++EK+SI
Sbjct: 238 VNQITDSIVRFCQNIEVKNKKLDELFIKDEKTNLYNYRHFKDHLIVDVARAKRFDEKVSI 297

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              DID FK  ND  GH  GD V+  ++  +           R GGEEFA     +  ++
Sbjct: 298 AMIDIDRFKAYNDANGHVAGDIVLEKMARIIREECRESDIPARFGGEEFAVLFSRTDSRK 357

Query: 192 AAILANDLRKIIENSQINISSG-PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKK 249
           A  +   LR +IE          P   +T+SAGIA          ++I  AD+ALY AK 
Sbjct: 358 AIEIVERLRSVIEAEPFYHEKELPDGQLTVSAGIATCPDDAADWYSLINNADKALYRAKN 417

Query: 250 SGRNRVVCFSDIENN 264
           +GRNRVV F ++ + 
Sbjct: 418 TGRNRVVHFRELADQ 432


>gi|220936300|ref|YP_002515199.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997610|gb|ACL74212.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
          Length = 786

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 88/175 (50%), Gaps = 14/175 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           ++ +I++E       +   +  D L+ L N       L +           L ++  D+D
Sbjct: 347 LTSAIMRETEA----LEYQASHDPLTDLPNRKLLNDRLQNELLRSGFTGAPLVLMVSDLD 402

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK+IND  GH VGD V+   +++L         V RLGG+EF+     ++ ++   +A 
Sbjct: 403 HFKEINDTLGHHVGDLVLQQAAERLYKTVRKADTVARLGGDEFSMLFPDTTLEQGLKIAR 462

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
            + ++ E+       G ++++ IS GIAE   H + ++ ++ RAD A+Y AK++G
Sbjct: 463 QIGRVFES--PFAVEGHNLNVGISIGIAEFPAHGDDVNILMQRADVAMYAAKQNG 515


>gi|254431310|ref|ZP_05045013.1| diguanylate cyclase/phosphodiesterase [Cyanobium sp. PCC 7001]
 gi|197625763|gb|EDY38322.1| diguanylate cyclase/phosphodiesterase [Cyanobium sp. PCC 7001]
          Length = 657

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 13/178 (7%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVF 133
           L+G++    + E   +   +   +  D L+GL N +  +  L         Y   + +++
Sbjct: 467 LVGFL--QDITERHAAEEMVRHQALHDPLTGLANRAQLMQQLERDLALAKRYGRAIGLLY 524

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEA 192
            D+D FK++ND +GH VGD+V+  +  +L  V      + R GG+EF      + S  E 
Sbjct: 525 LDLDGFKEVNDRYGHAVGDRVLQLVGQRLQEVLRQSDLLCRQGGDEFVVLVPDAGSLNEL 584

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
             LA  L ++  +S  ++ SG  I ++ S GIA    H   I  ++  AD A+YVAK+
Sbjct: 585 VTLATKLAEVCGSSLGDLGSG--IALSASVGIARFPDHGHTIDALLVAADNAMYVAKR 640


>gi|157962188|ref|YP_001502222.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157847188|gb|ABV87687.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
          Length = 923

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 92/194 (47%), Gaps = 15/194 (7%)

Query: 71  LVIISITISLLLGYISGSILKE----LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY- 125
           LV+  +TI + +  ++   L++       + N+++  ++ D L+ L N +     L    
Sbjct: 725 LVLSMLTIVVFIALLANKRLRKEVALRIEAENKMAHFAKHDSLTQLPNRALIEDRLEQAI 784

Query: 126 ------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                   + ++VF D+D FKQ+ND +GH VGDK++  +S+ L         VGRLGG+E
Sbjct: 785 LQHARDTAQFAVVFIDLDKFKQVNDRYGHQVGDKLLVHVSEVLTNGIRRSDTVGRLGGDE 844

Query: 180 FAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTII 237
           F          +    +  +L   +  S+  + S  ++ ++ S GIA      E I  ++
Sbjct: 845 FVIILNDIKDLKSVYDVTENLLASL--SKPFLISEQTVSVSASIGIAVYPKDGECIDALL 902

Query: 238 YRADQALYVAKKSG 251
             ADQ +Y  K +G
Sbjct: 903 KTADQQMYRVKNAG 916


>gi|89093603|ref|ZP_01166550.1| PAS:GGDEF protein [Oceanospirillum sp. MED92]
 gi|89081999|gb|EAR61224.1| PAS:GGDEF protein [Oceanospirillum sp. MED92]
          Length = 442

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 13/178 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQIN 143
            E   +  ++  L+  D L+GL N + F+                 ++++ D++ FK +N
Sbjct: 267 TEQRQAQEKLEFLAFHDPLTGLANRALFLDRVTRCIQMAERNKNHCAVIYLDLNDFKPLN 326

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKI 202
           D +GHP GD+V+  ++++L  +      V R GG+EFA     ++  + A ++A  +   
Sbjct: 327 DRYGHPFGDEVLKKVAEKLHNLVRKVDTVSRQGGDEFALLLEETTSVEGAILVAQKVITS 386

Query: 203 I-ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + E  QIN     +I+I  SAGIA    H +    +I  AD+A+Y AK  G N    +
Sbjct: 387 LREPMQIN---DQTINIGASAGIAVYPDHGKSSEKLIGNADKAMYAAKFLGGNGYYLY 441


>gi|85711644|ref|ZP_01042701.1| Signaling protein with membrane-bound sensor domain and GGDEF
           domain [Idiomarina baltica OS145]
 gi|85694504|gb|EAQ32445.1| Signaling protein with membrane-bound sensor domain and GGDEF
           domain [Idiomarina baltica OS145]
          Length = 394

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 104/227 (45%), Gaps = 12/227 (5%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           S+  AT + +  I    +G      LE +  +  SL+      +L L       ++    
Sbjct: 169 SVPTATRLVLLLIMANIVGYCALLRLEILQRKQFSLLNEERDQNLAL----QREVEHRKS 224

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              ++ +L+  D L+ L   S FI             N    ++  D+D+FKQIND +GH
Sbjct: 225 LEAQLRRLAERDTLTELDTRSHFIKRAEALLERALRENTAFCLLMIDVDHFKQINDTWGH 284

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+V+  ++  +         VGR GGEEF  A   +  +EA  LA  L   +   ++
Sbjct: 285 TRGDEVLKQVAKTIRQSLRRVDVVGRFGGEEFIVAMPNTHHKEAVKLAQRLTANVNAIEL 344

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                  + ++I+ GIA + ++  +  +I RAD+ LY  K++GRNRV
Sbjct: 345 PSPLNQ-VSVSITVGIAMKSNERSLDLLIQRADEMLYKGKRNGRNRV 390


>gi|254787843|ref|YP_003075272.1| PAS sensor diguanylate cyclase/phophodiesterase [Teredinibacter
            turnerae T7901]
 gi|237684656|gb|ACR11920.1| PAS sensor diguanylate cyclase/phophodiesterase [Teredinibacter
            turnerae T7901]
          Length = 1416

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 9/199 (4%)

Query: 69   LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
            LS+V + ++  +    I+     E      R+   S  D L+GL+N       L      
Sbjct: 946  LSIVPLQLSDDVRGCIITLRDTSERHRQLERLKWQSTHDSLTGLVNREEMEKRLERAIAT 1005

Query: 125  ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                  + S+++ D+D FK IND  GH  GD+++  L+  +  +  T     RLGG+EFA
Sbjct: 1006 SRREGIESSLLYMDLDQFKVINDTCGHLAGDQLLKQLAQLIRDMLRTRDTFARLGGDEFA 1065

Query: 182  AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRA 240
                     EA  +A  +++ + + +       +  + +S GI         +S ++  A
Sbjct: 1066 ILLDHCPILEAEAIAQKIKQKVCDYRFAWED-KAFRVGVSIGIVGIHPSVSQLSQVLSDA 1124

Query: 241  DQALYVAKKSGRNRVVCFS 259
            D A Y AK++GRN +   +
Sbjct: 1125 DAACYAAKEAGRNCIQIHT 1143


>gi|220936199|ref|YP_002515098.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997509|gb|ACL74111.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 388

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 102/228 (44%), Gaps = 25/228 (10%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
           +  +F  Y+G +  Y   +     +  VI   T  L         L+E + +      L+
Sbjct: 168 LLRLFSVYLGQSVTY---WRHTHQMEAVIRERTAELRQALDQAQELRERYEA------LA 218

Query: 105 RIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            +D L+GL N   F       +S    + +  +++  D+D+FK++ND+ GH  GD+V+  
Sbjct: 219 VVDDLTGLNNRRFFFPEAQAALSRTRRHGQPFAVLALDLDHFKRVNDDHGHAWGDRVLQD 278

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +   L  +      + R GGEEF  A  G+  + A  LA  +R  +     N+     + 
Sbjct: 279 VGAALKSMLREGDILARFGGEEFMFALPGTDLEGAMSLAQRIRARLAKLSWNVGDRCLL- 337

Query: 218 ITISAGIAERCHKEP--------ISTIIYRADQALYVAKKSGRNRVVC 257
           +T S G++     E         +  ++ +AD+ALY +K +GR+RV  
Sbjct: 338 VTASMGVSGLGEDEAAEGSSHEILDRLVAQADEALYGSKHAGRDRVTV 385


>gi|153875139|ref|ZP_02003066.1| two-component response regulator [Beggiatoa sp. PS]
 gi|152068397|gb|EDN66934.1| two-component response regulator [Beggiatoa sp. PS]
          Length = 355

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 14/194 (7%)

Query: 78  ISLLLGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNE 127
           ++L L ++   + +       +   + +L+ +D L+ + N   F          L    +
Sbjct: 158 VNLQLNHLKKQLEQRNVAFENANKELKRLNALDGLTLIANRCRFDEYLTQKWYELEQQPQ 217

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALG 186
            LS++F D+DYFK  ND +GH  GD+ +  ++  +  V  G+   V R GGEEF      
Sbjct: 218 PLSLIFADVDYFKHYNDQYGHLAGDECLRKIAQSINKVAKGSSDLVARYGGEEFVVLLPN 277

Query: 187 SSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQA 243
              +    +A +++  I+N +I +  S  S ++++S GIA            +I  AD+A
Sbjct: 278 RQAEGTIQIAENIQIAIQNLKIVHAKSSISDYVSMSMGIASLIPNPNLSPEKLIKMADEA 337

Query: 244 LYVAKKSGRNRVVC 257
           LY AK  GRN +V 
Sbjct: 338 LYQAKHQGRNCIVV 351


>gi|73541425|ref|YP_295945.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia eutropha JMP134]
 gi|72118838|gb|AAZ61101.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia eutropha JMP134]
          Length = 663

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 95/185 (51%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
            + G+ + +     +++++ S  D L+G+ N +   + + +Y         + +I   D+
Sbjct: 207 LLFGADVTKWAQKLHQLTEQSLTDPLTGVGNRALIRNRVEAYFTGDASQRGRFAIALMDL 266

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-L 195
           D FK+IND+ GH +GD ++  LS +LV    +   V RLGG+EF       S +EAA+ +
Sbjct: 267 DGFKKINDSLGHEIGDILLKELSQRLVATVRSRDTVARLGGDEFVILLDDVSSEEAAVGM 326

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
              + ++    Q    +G  + +T S G+A     +E  + ++ RAD+A+Y AK  G NR
Sbjct: 327 LEQIMRVCR--QPFHLAGCQVRVTTSIGLAFASGVRETDAQLLRRADRAMYEAKAQGNNR 384

Query: 255 VVCFS 259
              +S
Sbjct: 385 YCLYS 389


>gi|56477012|ref|YP_158601.1| hypothetical protein ebA2804 [Aromatoleum aromaticum EbN1]
 gi|56313055|emb|CAI07700.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 237

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 78/176 (44%), Gaps = 11/176 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           +L+EL     R+  LS  D L+GL N    +  L               I+  DID+FK 
Sbjct: 64  MLREL---NQRLEWLSHRDALTGLPNRRHALMRLREEHVRAQRGGRSFVIMIIDIDHFKD 120

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH +GD+ +  ++ +L           R GGEEF      +    A   A  LR 
Sbjct: 121 INDTWGHELGDQALTAVAARLAASVREYDVCARWGGEEFLVMLPDTEPCTAGDNAERLRA 180

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + N  + I     + IT+S G+      E ++  + R D ALY AK  GR+R+  
Sbjct: 181 CVGNDPV-IIGERQLRITVSLGVGSCRLGEELAEFMKRVDDALYFAKHEGRDRIAF 235


>gi|117918807|ref|YP_867999.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117611139|gb|ABK46593.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 605

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 67/257 (26%), Positives = 106/257 (41%), Gaps = 16/257 (6%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG-LEYILVENLSLVIISIT 77
           LE  SP  +    S+      A  I  AN  L  + L+     L +   + + L   +  
Sbjct: 349 LERESPTEYQALRSVGICSIAAFAIKNANELLGLLSLSMVSRPLNWNPQKKVMLTQFAAA 408

Query: 78  ISLLL-----GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKL 129
           ++ LL          S+ + L     ++  ++  D L+GL N   F   + +L    + +
Sbjct: 409 LNELLLREEKERQMLSLQQALVSVNAQLRVMAETDELTGLSNRRPFTHTLETLLQQAKPV 468

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF--GTPMFVGRLGGEEFAAAALGS 187
            ++  D+DYFK  ND +GH  GD  +  ++  L           + R+GGEEFA      
Sbjct: 469 GLLMLDVDYFKSYNDTYGHLEGDAALRLVAQALKQCDVLPQDSLLARIGGEEFAIILEQI 528

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-----PISTIIYRADQ 242
           +  +   +AN L   +    I   S P   IT+S G              +S ++ RAD 
Sbjct: 529 TPIQLEAIANQLCYRVAALDIPHRSSPKGKITLSIGGVYLPLDTSVRGFTLSEVLRRADI 588

Query: 243 ALYVAKKSGRNRVVCFS 259
            LY AK+ GRN VV  S
Sbjct: 589 CLYRAKEQGRNTVVIES 605


>gi|119357129|ref|YP_911773.1| diguanylate cyclase [Chlorobium phaeobacteroides DSM 266]
 gi|119354478|gb|ABL65349.1| diguanylate cyclase [Chlorobium phaeobacteroides DSM 266]
          Length = 424

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 62/197 (31%), Positives = 100/197 (50%), Gaps = 12/197 (6%)

Query: 79  SLLLGYISGSIL---KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128
           S  +G I+ +++   +++ +   ++ +L   D  + L N+  F       +     ++ K
Sbjct: 223 SFEIGQITETLVSLCEDVAVKSKKLDELFIRDEKTTLYNYRYFKEHLIIDVERAKRFDYK 282

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +S+   DID+FKQ ND  GH  GD+V+  L+D +V    +     R GGEEFA     ++
Sbjct: 283 VSLAMIDIDHFKQYNDANGHIAGDQVLGRLADVIVSQCRSSDVPSRFGGEEFAVLFPKTA 342

Query: 189 EQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAERCHK-EPISTIIYRADQALYV 246
            + A+ +A  LR +I    I      PS  +T+S GIA          T+I  AD+ALY 
Sbjct: 343 HETASSIAERLRMVICAEPIPHEKHQPSGRLTVSIGIATFPDDAADWYTLINNADRALYH 402

Query: 247 AKKSGRNRVVCFSDIEN 263
           AK +GRN V+ FS I+ 
Sbjct: 403 AKAAGRNMVIAFSSIDQ 419


>gi|330964835|gb|EGH65095.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 521

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 61/228 (26%), Positives = 108/228 (47%), Gaps = 15/228 (6%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL----KELFISY 97
           ++  A +   Y+   P++   Y  +  + ++I+++ +  +L Y     L    +EL  + 
Sbjct: 275 IVAAAGVSCQYV-FAPWWAYTYRSMALIGMIILALALLSMLFYRQIQHLIKAEEELTSAR 333

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
             +  +++ D L+ L N   F  +L          N  ++I+  DID+FKQ ND +GH  
Sbjct: 334 AALEIIAQTDGLTHLANRRCFDVALQQEWGRATRNNSTIAIILLDIDWFKQYNDRYGHLR 393

Query: 151 GDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD  +  ++  +   V        R GGEEF      ++   A  +A  +R  I N+ I 
Sbjct: 394 GDDCLKQVAGLIGSSVSRASDLAARFGGEEFVILLAETNLAGAMSVAEKIRLSISNAFIE 453

Query: 210 ISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            S+ P   +TIS+G+       +E  + ++  AD+ LY AK +GRNRV
Sbjct: 454 HSASPLGSVTISSGVVVINAREEEGYTVVLEEADRLLYRAKANGRNRV 501


>gi|325920713|ref|ZP_08182619.1| diguanylate cyclase with GAF sensor [Xanthomonas gardneri ATCC
           19865]
 gi|325548765|gb|EGD19713.1| diguanylate cyclase with GAF sensor [Xanthomonas gardneri ATCC
           19865]
          Length = 356

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 13/173 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           ++      + + +R D L+GL N  AF            +  + LS+   D+D+FK +ND
Sbjct: 188 QMDALNADLVEQTRTDPLTGLPNRRAFAAALAAATEQTRAAGQPLSVALLDVDHFKTVND 247

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD V+  LS  L         + R GGEEF          +A +    LR+ + 
Sbjct: 248 VHGHDQGDVVLRELSALLRAHVAGAGTIARYGGEEFVLLLPNVDLLQARVQCEYLRQSVA 307

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              I +       +T+S G+A    +E +  +I RADQALY AK+ GR++VV 
Sbjct: 308 VMTIALP------VTVSIGVATLHPQENVEAVIKRADQALYAAKRGGRDQVVA 354


>gi|296273906|ref|YP_003656537.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
 gi|296098080|gb|ADG94030.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
          Length = 478

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 8/166 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHP 149
             ++  L+  D L+ L N   F        ++        SI+FFD+D FK +NDN+GH 
Sbjct: 310 NKKLENLASYDSLTNLHNRRTFNDFFEKSLKQFKRDKIPKSIIFFDLDDFKLVNDNYGHL 369

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD V+  ++  L +       + R GGEEF      S  ++   +A  L+   EN  I 
Sbjct: 370 VGDDVLKRIAAILKLQIRDSDNIARWGGEEFLILLNNSDLEQTFDIAQKLKNCFEN-DIE 428

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +++     IT S G++     + I  II RAD+ LY  K SG+NRV
Sbjct: 429 LNNLVKEGITASFGVSTFKEDDTIEKIISRADKTLYKVKNSGKNRV 474


>gi|330889354|gb|EGH22015.1| GGDEF domain-containing protein [Pseudomonas syringae pv. mori str.
           301020]
          Length = 220

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 8/170 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y   +Q +  D L+   N  A    L         + + LS++  DID+FK++ND +GH 
Sbjct: 52  YRIATQTALRDPLTSTGNRIAMDQGLAREIEISRRHKQPLSLLMLDIDHFKKVNDEYGHH 111

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  L         V R GGEEF      +    A ++   LR+ + N +  
Sbjct: 112 TGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGASSAELIGERLRQAVRNLEFR 171

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               P++ +T+S G +     E   +++ RAD ALYVAK+ GRNR+   S
Sbjct: 172 ELD-PALTMTVSLGCSTLLPAETADSLLRRADNALYVAKREGRNRLAMAS 220


>gi|326795951|ref|YP_004313771.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326546715|gb|ADZ91935.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 361

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 65/275 (23%), Positives = 120/275 (43%), Gaps = 27/275 (9%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHT--FMIYFSIFFSIF--------IATVIFIANIFLFYI 53
           SL    + W      +E F P T  F+   +I   +         +     +A   + Y+
Sbjct: 88  SLIHTWAAWNDQLTLIERFPPITGIFIATLAIGLIMLPKHYKKYIVLVWAIVALPLISYL 147

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI-------SQLSRI 106
            + P    E +  +    ++  +  + +L YI     K +    +R+        Q +  
Sbjct: 148 LMNP----EELHTDRGHELLGILGPACILLYIMAPYQKNVKSHLDRVANDLKRSKQEADR 203

Query: 107 DCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           D L+ + N     + L     N+ + +   D+D+FK++ND FGH +GD+V+  ++ +L  
Sbjct: 204 DFLTDINNRRGLQNKLRELQPNDDICVFLIDVDHFKRVNDTFGHDIGDRVLIEIASRLRT 263

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           V+    F+ R GGEEF    +         +A   + I+ +S           +T+S G+
Sbjct: 264 VYPERHFLTRWGGEEFMITLINPKSDRIQTIAERFQTILSHSPYQHVG----TVTVSLGV 319

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +   + +   TI+ +AD A+Y AK +GRN+V  FS
Sbjct: 320 SSLSNHKDFETIVQQADNAMYEAKHNGRNQVALFS 354


>gi|188492505|ref|ZP_02999775.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli 53638]
 gi|188487704|gb|EDU62807.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli 53638]
          Length = 661

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINHADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|323977080|gb|EGB72167.1| EAL domain-containing protein [Escherichia coli TW10509]
          Length = 661

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLREVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|300924100|ref|ZP_07140094.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|300419696|gb|EFK03007.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
          Length = 362

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 103/223 (46%), Gaps = 11/223 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVVYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      +R+ +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVREGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKS 250
              + P + + IS G+A    +       +  AD ALY AKK+
Sbjct: 322 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKA 362


>gi|302879266|ref|YP_003847830.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
           capsiferriformans ES-2]
 gi|302582055|gb|ADL56066.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
           capsiferriformans ES-2]
          Length = 578

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 23/201 (11%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKL--S 130
           IS  +G  S   + E   +   I++++  D L+ L N       LG      Y   +  +
Sbjct: 366 ISQFVGIFS--DITERKKNEELINKMAYYDPLTQLPNRRMLTDRLGRAMAANYRHAIYGA 423

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG---- 186
           ++F D+D FK +ND  GH  GD ++  +  ++         V R GG+EF          
Sbjct: 424 VMFVDLDRFKPLNDTHGHVAGDLLLVEVGRRIGSCIREMDTVARFGGDEFVVMLSELNSD 483

Query: 187 --SSEQEAAILANDLRKIIENSQI-NISSGPSIHITI------SAGIAERCHKEPI-STI 236
              S  EA  +A  +R  +  +       G S+ + +      S G+     +E     I
Sbjct: 484 RTLSRAEAISVAEKIRVCLAETYFLKFKQGESLPVCVEHHCSSSIGVVLFNGQESSQEEI 543

Query: 237 IYRADQALYVAKKSGRNRVVC 257
             RAD+A+Y AK+ GRN V  
Sbjct: 544 FKRADEAMYQAKEGGRNSVRF 564


>gi|256831247|ref|YP_003159975.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
 gi|256580423|gb|ACU91559.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028]
          Length = 345

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 60/195 (30%), Positives = 90/195 (46%), Gaps = 23/195 (11%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           +L  +      + ++S  D L+ L N  AF     +           +S++F DID+FK 
Sbjct: 150 VLTHMEQDTRDLVEMSYTDSLTKLSNRRAFDRYYQTTLVEYMVTGNPMSLMFLDIDHFKD 209

Query: 142 INDNFGHPVGDKVIAFLSDQLV-------VVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
            ND++GH +GD+ +  ++ +L         V     F  R GGEEF     G    EAA 
Sbjct: 210 FNDSYGHRIGDQALVTVASKLTGYAQKYGTVPNRSFFPARFGGEEFVVVLPGVGLGEAAE 269

Query: 195 LANDLRKIIENSQINISSG------PSIHITISAGIAE---RCHKEPISTIIYRADQALY 245
            A +LR IIE+    I           I IT+S G+AE       E  + ++  AD+A+Y
Sbjct: 270 DAENLRTIIEDYNFIIRDHNGQVLQKGIKITVSIGVAELKKDWADEAGARLLDEADKAMY 329

Query: 246 VAKKSGRNRVVCFSD 260
            AK  GRNRV   ++
Sbjct: 330 RAKGRGRNRVCTMNE 344


>gi|157160966|ref|YP_001458284.1| diguanylate cyclase [Escherichia coli HS]
 gi|157066646|gb|ABV05901.1| diguanylate cyclase [Escherichia coli HS]
          Length = 460

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 281 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 339 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 399 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 456


>gi|54309750|ref|YP_130770.1| hypothetical protein PBPRA2589 [Photobacterium profundum SS9]
 gi|46914188|emb|CAG20968.1| hypothetical protein PBPRA2589 [Photobacterium profundum SS9]
          Length = 540

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 74/181 (40%), Gaps = 15/181 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           EL +   ++  LS++D L+ + N   F             +   LS++  D+D FK  ND
Sbjct: 359 ELELVNQKLESLSKLDPLTNIANRRVFDEKIIEEWRRAERHQLPLSLLVMDVDNFKSYND 418

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           N+GH  GD+ +  ++  L  +         R GGEEF     G     A   A      I
Sbjct: 419 NYGHAAGDQCLKAIATTLEKLERRAGALFARYGGEEFVLLLPGQDTHAAQYSAKQALNEI 478

Query: 204 ENSQINI-----SSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  Q+       +   S  +TIS G++            +  +AD ALY AK  GRNR  
Sbjct: 479 QQLQLTRTKCANTDCNSTIVTISIGVSTVIPTAHRSHHELFKQADIALYKAKSQGRNRYF 538

Query: 257 C 257
            
Sbjct: 539 V 539


>gi|330953519|gb|EGH53779.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 820

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 14/190 (7%)

Query: 83  GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           G ISG++L    ++  +     +S  +  D L+GL+N S F   L               
Sbjct: 348 GVISGAVLVLHDMTQEQQYIADLSWQAAHDPLTGLVNRSEFERRLQRVLDEDCGQGRSHC 407

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F D+D FK +ND  GH  GD+++  L   L         + RLGG+EF    +    +
Sbjct: 408 LMFLDLDQFKLVNDTGGHAAGDELLRQLCRALPQGLRDGDTLARLGGDEFGVLLVDCPAE 467

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
            A  +A  LR+++++    +  G     T+S G+         +   +  AD A Y+AK+
Sbjct: 468 TALDIAEALREVVQHLHF-MWKGRPFMTTVSIGLVHLGDTPASLEGSLSAADMACYMAKE 526

Query: 250 SGRNRVVCFS 259
            GRNRV  +S
Sbjct: 527 RGRNRVQAYS 536


>gi|284042675|ref|YP_003393015.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
 gi|283946896|gb|ADB49640.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
          Length = 587

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 10/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDI 136
            +    + E       +  ++  D L+GLLN   F   L         Y  + +++  D+
Sbjct: 138 LVQVLDITERKRVEAHLQHMADHDPLTGLLNRRRFEQELERHVAHVRRYGPEGAVLVVDV 197

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FKQ+ND +GH  GD+VIA ++  L     +   V R+GG+EFA     +   EA I+A
Sbjct: 198 DRFKQVNDAYGHTAGDRVIASVARVLHRRLRSTDTVARIGGDEFAVLLPKADRAEAEIVA 257

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNR 254
             L + +  +Q +   G   H+TIS G      +        +  AD A+Y AK SG + 
Sbjct: 258 RRLVEAVR-AQADPGDGERTHVTISVGATVLDERSELSAEAAVVDADLAMYDAKDSGGDG 316

Query: 255 VVCFS 259
              F 
Sbjct: 317 FAFFE 321


>gi|307152389|ref|YP_003887773.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7822]
 gi|306982617|gb|ADN14498.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7822]
          Length = 724

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 9/184 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFD 135
             I    + E      ++S  +  D L+GL+N   F   L +        ++   + + D
Sbjct: 272 AVIVFRDITESRSLTRQLSWQASHDSLTGLINRLGFEQQLEAAIKSAKNEHQHHVLCYLD 331

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D FK +ND  GH  GD+++  ++  L     +   + RLGG+EFA      S ++A  +
Sbjct: 332 LDQFKVVNDTCGHAAGDELLREVTSLLQQRVRSSDILARLGGDEFAVLLNQCSLEKATEI 391

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           A   R++I+  + +  +  S  I +S G+    +     ++++  AD A Y AK  GRN 
Sbjct: 392 AETFRQLIDKFRFSW-NNKSFSIGVSIGVVAIDYTSKDKNSVLSVADAACYAAKGKGRNC 450

Query: 255 VVCF 258
           V  +
Sbjct: 451 VQVY 454


>gi|90418218|ref|ZP_01226130.1| conserved hypothetical protein with GGDEF domain [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337890|gb|EAS51541.1| conserved hypothetical protein with GGDEF domain [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 386

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 82/184 (44%), Gaps = 9/184 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKL-SIVFFDIDYFK 140
             + E  +  +++  L+  D ++GL N S F + L            + +++  D+D FK
Sbjct: 198 QDITEEKLLADKMRYLAEYDVMTGLANRSQFQTRLADLEGTTAGKRPVGALLLIDLDGFK 257

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD  +   + +L  V      V R+GG+EFA      S ++A  +     
Sbjct: 258 AINDTYGHAFGDVCLKATATRLRQVCDDAELVARIGGDEFAVLL--GSHRDAVAVETLAA 315

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            I++      + G +  +  S GIA         T+  RAD ALY AK SGRN    FS 
Sbjct: 316 TIVDLLNGPAADGTASDLGASVGIAMAEAGMAPDTLFCRADSALYAAKASGRNAYRMFSS 375

Query: 261 IENN 264
              N
Sbjct: 376 TMQN 379


>gi|332142595|ref|YP_004428333.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552617|gb|AEA99335.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Alteromonas macleodii str. 'Deep ecotype']
          Length = 477

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 87/185 (47%), Gaps = 9/185 (4%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           L  +  +  +EL  +  ++ +L+ +D L+ + N  AF+ SL           + + +   
Sbjct: 276 LEQLVNNRTRELRSANLKLEKLAYVDALTHIPNRRAFLDSLKKFLHLACRNKQAILVGIA 335

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D+FK IND FGH  GD V+  ++  L  +F     +GR+GGEEFA      + + A  
Sbjct: 336 DVDHFKSINDQFGHAFGDDVLVTVAQTLQKLFRQEDCIGRIGGEEFAFCMSLPTPRAANQ 395

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGR 252
           L    R+ I +           ++T+S G       E      ++  AD ALY AK SGR
Sbjct: 396 LLERFRETICHLHTTQPILKGRNVTVSIGAVYTQKTENTEIKALLKAADDALYKAKNSGR 455

Query: 253 NRVVC 257
           N V C
Sbjct: 456 NAVEC 460


>gi|148546689|ref|YP_001266791.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas putida
           F1]
 gi|148510747|gb|ABQ77607.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida F1]
          Length = 332

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 15/182 (8%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFF 134
           L +++  + ++L    +   +L+  D L+ + N     S+L           + LS++  
Sbjct: 158 LSWVNQQLQRQL----DENRELAERDALTRVANRYRLESALQRECQRAQRFRQPLSLIAM 213

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND +GH  GD  +  +++ L         + R GG+EF      ++  EA  
Sbjct: 214 DMDDFKPINDRYGHARGDAALVRVAESLRTCLRELDLLARWGGDEFVIVLPQTALGEALD 273

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +A  LR+++E  +          +T+S G+ +    E    ++ RAD+ALY AK +G+N 
Sbjct: 274 VAARLRQVLEQVEPV----GDCRLTMSYGVVQWLEGEDQHALLARADKALYRAKGTGKNA 329

Query: 255 VV 256
           + 
Sbjct: 330 IA 331


>gi|114046143|ref|YP_736693.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113887585|gb|ABI41636.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 302

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
            S + +      ++ QLS  D L+GL N       L         ++   SI+  D+D+ 
Sbjct: 122 ASNISKRHKLELQLRQLSDTDQLTGLYNRRRLDRDLQLLFDTFSRHHIPASILVLDLDHL 181

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND  GH  GD+VI  +++     F       R GG+EF  A  G    +A + A  L
Sbjct: 182 KLINDQLGHQAGDRVIMAVAEACQQQFRKTDSAYRFGGDEFVIALPGVDHDQAIVFAEYL 241

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
                 +   +S    +  T+S G+A     +      + RAD ALY AK+ G+NRV+ 
Sbjct: 242 CDCCFKALQKLSV-KGLFATVSIGVASIEAGDKSYEDTLKRADAALYQAKRDGKNRVIA 299


>gi|323225154|gb|EGA09402.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
          Length = 510

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 101/223 (45%), Gaps = 13/223 (5%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDC 108
           + G+   +    + V  L+++ I++ +SL    +      +   L  +   ++QL+  D 
Sbjct: 17  HRGVDSNWLAVLVSVVALTILGITLLVSLFDARLQARTALLASSLAQANQELAQLALHDT 76

Query: 109 LSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ L N       L          +   +++F D+D FK +ND +GH +GDK++  ++ +
Sbjct: 77  LTRLPNRVLLEDRLEQAISKANRESTSFALLFMDLDGFKAVNDAYGHDIGDKLLVAVTHR 136

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L         + R+GG+EF   A  S+  EAA LA+ L   I+           + +T+S
Sbjct: 137 LNQPLSGQFTLARIGGDEFVLLAEVSAPDEAASLASALVHSIDA--PFTIDPYELVVTLS 194

Query: 222 AGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            GIA      +    +++ AD A+Y  K +GRN    F    N
Sbjct: 195 VGIALYPLDGKNERELMFNADAAMYHTKHTGRNGYHFFQPSMN 237


>gi|313200980|ref|YP_004039638.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. MP688]
 gi|312440296|gb|ADQ84402.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. MP688]
          Length = 748

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 77/183 (42%), Gaps = 16/183 (8%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNF 146
             + + I +L+  D L+ L N    +  L          +    ++F D+D FK +ND+ 
Sbjct: 308 KKAQDEIERLAYFDALTNLPNRRLLMERLSQALNNSRSSHRIGGLMFIDLDNFKTLNDSR 367

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE------AAILANDLR 200
           GH  GD ++  ++ +L+        V R+GG+EF          E      A+ +A  + 
Sbjct: 368 GHAFGDLLLKEVAARLLRAVRNHDTVARIGGDEFVLLLEDIGRDEGAAIQTASQIAEKIL 427

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I +   ++ +      + S GI         +  ++ RAD A+Y  K++GRN    F 
Sbjct: 428 ADI-SLPFDLGNYKH-QCSASIGICMFYRQGMHVEEVLKRADAAMYETKRAGRNNYRFFD 485

Query: 260 DIE 262
           +  
Sbjct: 486 ESM 488


>gi|186473821|ref|YP_001861163.1| diguanylate cyclase [Burkholderia phymatum STM815]
 gi|184196153|gb|ACC74117.1| diguanylate cyclase [Burkholderia phymatum STM815]
          Length = 511

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 87/183 (47%), Gaps = 9/183 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFF 134
             I    + +   S  RI  L+R D L+GL N   F   L         S   + ++ + 
Sbjct: 322 AVIIIEDVTQRRESEARILHLARHDPLTGLANRREFHDRLKLMLSAAPASAASRAAVFYL 381

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK +NDN GH  GD+V+  ++ +L           RLGG+EFA     S+    A 
Sbjct: 382 DLDGFKNVNDNLGHGAGDEVLTMVAARLEQTLRDGELAARLGGDEFAVIVRDSTPLVVAT 441

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +A  + +++      +++G ++ I  S GIA     + +  +I RAD+ALY AK++G+  
Sbjct: 442 IARRIIRVVSR-PYRLAAGRTVSIGTSIGIALSAPDDAVDALISRADEALYAAKQAGKGT 500

Query: 255 VVC 257
              
Sbjct: 501 FRV 503


>gi|332091682|gb|EGI96762.1| protein gmr [Shigella boydii 5216-82]
          Length = 652

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 91/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 210 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 269

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 270 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 328

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    +TII  AD A+Y AK+ GR +   F
Sbjct: 329 --LTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSATIIRHADTAMYTAKEGGRGQFCVF 386

Query: 259 SDIENN 264
           +   N 
Sbjct: 387 TPEMNQ 392


>gi|320179730|gb|EFW54678.1| Putative Heme-regulated two-component response regulator [Shigella
           boydii ATCC 9905]
          Length = 460

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 281 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 339 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 399 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 456


>gi|312197315|ref|YP_004017376.1| diguanylate cyclase [Frankia sp. EuI1c]
 gi|311228651|gb|ADP81506.1| diguanylate cyclase [Frankia sp. EuI1c]
          Length = 531

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 56/262 (21%), Positives = 111/262 (42%), Gaps = 30/262 (11%)

Query: 23  SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL 82
           +P     + ++ +++     + I       +   P   +E      +SL+++++   ++ 
Sbjct: 268 APRAVWAHAALPYAVLGVAGVLILGRL---VAGAPLDRVEA--YGTVSLLVLALARQMMT 322

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----------------- 125
              +  +L E+ +   ++   +  D L+GL N + F   L                    
Sbjct: 323 IAENTHLLAEVRVREGQLRHQAFHDPLTGLANRALFSRRLARAVGGDHPPSGAGSTPGGG 382

Query: 126 ----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                E ++++F D+D+FK +ND FGH VGD+++   + +L         V RLGG+EFA
Sbjct: 383 ALAGREAVAVLFVDLDHFKGVNDAFGHAVGDELLKISAARLCAAVRATDTVARLGGDEFA 442

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYR 239
               G    +   +A  L   +E  +    +G       S G+    H  P    T++++
Sbjct: 443 VILAGHGPDKPVQIAQRLAAAVE--EPCELAGRRYDPRASLGLVTLDHAGPTCPDTLLHQ 500

Query: 240 ADQALYVAKKSGRNRVVCFSDI 261
           AD A+Y AK+    R+V +  +
Sbjct: 501 ADLAMYAAKRERSRRLVVYDPV 522


>gi|262396686|ref|YP_003288539.1| GGDEF domain protein [Vibrio sp. Ex25]
 gi|262340280|gb|ACY54074.1| GGDEF domain protein [Vibrio sp. Ex25]
          Length = 327

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 83/179 (46%), Gaps = 9/179 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDN 145
           L I   ++  L+  D L+G+ N   F+  + S   +         +   D+D FK +ND 
Sbjct: 150 LHIQIMKMEHLATTDDLTGIPNRREFMRQIESRLTEYRTQGIDFHVAILDLDNFKSLNDR 209

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GDK +    + +         + R+GGEEFA      S QEA      +R  +E 
Sbjct: 210 FGHDAGDKSLIHAVNTIQSHLLDCDLLARVGGEEFAIVLRSRSSQEALNTLETIRNALET 269

Query: 206 SQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + I  S G  +  T S G+ + C   +    ++ RAD ALY AK++GRNRV      EN
Sbjct: 270 TTIQHS-GRDMSFTASIGVTQVCSLDDSFEPLVKRADLALYKAKETGRNRVEVHKTEEN 327


>gi|171058223|ref|YP_001790572.1| PAS/PAC sensor-containing diguanylate cyclase [Leptothrix cholodnii
           SP-6]
 gi|170775668|gb|ACB33807.1| diguanylate cyclase with PAS/PAC sensor [Leptothrix cholodnii SP-6]
          Length = 681

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 8/176 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQ 141
             + +   ++  ++  +  D L+GL+N   F   L      +      + +F D+D FKQ
Sbjct: 492 RDVTDEREAHRELAWTANHDALTGLVNRRHFEHELARLLAHMQPGMTAAALFIDLDRFKQ 551

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND+ GH  GD+V+  ++  L         V RLGG+EFA          A  +A+ +R 
Sbjct: 552 VNDSAGHAAGDQVLREVAQALAASVRRDELVARLGGDEFAIVLGACDLAAAERIAHKVRL 611

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            +E   +       + +  S G+ E       ++ ++  AD A Y AK++GRN V 
Sbjct: 612 AVEQVIVRWGE-HELSVGASVGVVEIPAGGVDVAGVLNGADLACYEAKQAGRNAVR 666


>gi|54308256|ref|YP_129276.1| GGDEF family protein [Photobacterium profundum SS9]
 gi|46912684|emb|CAG19474.1| hypothetical GGDEF family protein [Photobacterium profundum SS9]
          Length = 339

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 60/171 (35%), Positives = 82/171 (47%), Gaps = 5/171 (2%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNF 146
           +  L  +     + +  D L+G+LN  AF      Y   N  LS +  DID FK  ND F
Sbjct: 165 ITTLREALAESQKEANEDALTGILNRRAFDRDFQHYIESNTPLSFILLDIDKFKDFNDKF 224

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN- 205
           GH +GD+V+  ++ +L V         R GGEEFA       +  A   A   R+  E  
Sbjct: 225 GHLMGDQVLKTIARRLKVNCRDYAQAYRFGGEEFAIILPHKMKASARQQAETFRRAFERI 284

Query: 206 SQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S I+  +G  +  IT S G+AE+   E    +I RAD  +  AKK GRNRV
Sbjct: 285 SVIDKKTGQRVNSITASFGVAEKQPNESGECLIDRADSFMNQAKKLGRNRV 335


>gi|237731416|ref|ZP_04561897.1| diguanylate cyclase [Citrobacter sp. 30_2]
 gi|226906955|gb|EEH92873.1| diguanylate cyclase [Citrobacter sp. 30_2]
          Length = 449

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 73/238 (30%), Positives = 115/238 (48%), Gaps = 23/238 (9%)

Query: 41  TVIFIANIFLFYIGL--TPFYGLEYILVENLS-LVIISITISLLLGYISGSILKELFISY 97
           +++ ++N+    I L  T      + L   L  L  +++ I L+      S + + + + 
Sbjct: 218 SLVALSNLLSVIIMLKYTHIDSAGWYLARGLECLSAMAVMIVLM------SDIFKRYKAS 271

Query: 98  NRISQLSR----IDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFG 147
            +  +LS      D ++ L N   F ++L +       ++ LSIVF DID+FK +ND +G
Sbjct: 272 RQAYELSYENSVRDPMTRLFNRGYFYNALSNEIKMTAPHKPLSIVFCDIDFFKSVNDTWG 331

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+VI  LS+ +  +      V R+GGEEFA     ++   A  +A  +RK +E   
Sbjct: 332 HLQGDRVIIKLSEIMQRLSRRNDIVARIGGEEFAILLPETNADAAFDIAERIRKHVEQQT 391

Query: 208 INISSG--PSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFSDIE 262
              + G  P I ITIS GI            +   AD+ALY+AK  GRN VV +S  E
Sbjct: 392 QATTKGDFPRI-ITISLGIVTSVDNRSAPEQLADCADRALYMAKNRGRNCVVAYSGEE 448


>gi|225848060|ref|YP_002728223.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644571|gb|ACN99621.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 638

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/200 (29%), Positives = 97/200 (48%), Gaps = 10/200 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129
           +++I+ + I LL       ++K L+       + S ID L+GL N +          +  
Sbjct: 197 AILIVIVFIVLLANVAIVGVIKTLY-----YKKRSLIDSLTGLYNRNYLEEIENKNLKDF 251

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            ++  D+D+FK+IND +GH VGD V+  +++ +         V R GGEEF         
Sbjct: 252 VVIVADVDFFKKINDTYGHLVGDNVLKTVAETIKKNVRENNIVIRYGGEEFLIILNKERS 311

Query: 190 QEAA---ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245
            +      +A  +RK +EN +I I+    +  T+S GI     K + +   I +AD ALY
Sbjct: 312 VDNLNYINVAERIRKAVENLKIKINENDYLKTTLSVGIFLDTDKIKTLQEAIKKADVALY 371

Query: 246 VAKKSGRNRVVCFSDIENNT 265
            AK  GRNR+  + + EN +
Sbjct: 372 KAKTKGRNRIEIYDE-ENQS 390


>gi|194437128|ref|ZP_03069227.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli 101-1]
 gi|253773714|ref|YP_003036545.1| RNase II stability modulator [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254161365|ref|YP_003044473.1| RNase II stability modulator [Escherichia coli B str. REL606]
 gi|194424111|gb|EDX40099.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli 101-1]
 gi|242377064|emb|CAQ31790.1| modulator of RNase II stability [Escherichia coli BL21(DE3)]
 gi|253324758|gb|ACT29360.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973266|gb|ACT38937.1| modulator of Rnase II stability [Escherichia coli B str. REL606]
 gi|253977480|gb|ACT43150.1| modulator of Rnase II stability [Escherichia coli BL21(DE3)]
 gi|323962503|gb|EGB58084.1| EAL domain-containing protein [Escherichia coli H489]
 gi|323973472|gb|EGB68658.1| EAL domain-containing protein [Escherichia coli TA007]
          Length = 661

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINHADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|149185040|ref|ZP_01863357.1| putative response regulator [Erythrobacter sp. SD-21]
 gi|148831151|gb|EDL49585.1| putative response regulator [Erythrobacter sp. SD-21]
          Length = 295

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 73/266 (27%), Positives = 115/266 (43%), Gaps = 35/266 (13%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS------LVIISITISL 80
             I   + F + I  + F     LF+IG T       +L  + S       ++I + +++
Sbjct: 25  MAIGVLVMFGLAIPLLPFRRRGMLFFIGGTVITTGSLVLHTHGSGEFARTYLVILVLVAV 84

Query: 81  LLGYISGSILK-----------------ELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
             G +S  I                   +L  S  R+++LS  D L+ L N      +  
Sbjct: 85  AAGILSRRIRWLEKRTILLTLQAEDRAGDLEQSNRRLTELSMQDPLTDLANRRWAEKAFE 144

Query: 124 SYNE--------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGR 174
            +          + +I+  DID FK+IND +GH VGD+ +  +++ L     GT     R
Sbjct: 145 RHYALSPAEAPGQTAILLIDIDRFKEINDRWGHDVGDRGLQAVAEVLRHAASGTSGLAAR 204

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKE-- 231
            GGEEF          EA   A ++R  IE  +I + S P  +  T+S G+     +E  
Sbjct: 205 FGGEEFVILLRVDGPGEARRFAEEVRASIERIEIEVDSPPRKLGCTVSIGVVVHAGEEKP 264

Query: 232 PISTIIYRADQALYVAKKSGRNRVVC 257
            +S ++ RAD+ LY AK  GRNR V 
Sbjct: 265 SLSKLLKRADKVLYQAKSDGRNRSVL 290


>gi|146339964|ref|YP_001205012.1| hypothetical protein BRADO2968 [Bradyrhizobium sp. ORS278]
 gi|146192770|emb|CAL76775.1| Conserved hypothetical protein; putative diguanylate cyclase
           (GGDEF)/phosphodiesterase (EAL) with PAS domains
           [Bradyrhizobium sp. ORS278]
          Length = 838

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 11/189 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136
            ++   + E      RI+ ++  D L+ L N   +   L    +        ++++  D+
Sbjct: 389 LVAIVDITERRKVEARIAHMAHHDGLTNLPNRELYQERLRQALQPGPGGPKPIAVLCVDL 448

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAIL 195
           D FK +ND+ GHP+GD+++  ++D+L           RLGG+EFA     + S  EA+  
Sbjct: 449 DLFKNVNDSLGHPMGDRLLQAVADRLRERVHGGDLAARLGGDEFAVILANAPSLNEASDF 508

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A  L + +  S      G  + I  S GIA           ++  AD ALY AK+ G   
Sbjct: 509 AAGLIQAL--SAPYEIDGQELVIGASIGIALAPSDGSTSEQLMKNADMALYRAKEEGGGV 566

Query: 255 VVCFSDIEN 263
              F    +
Sbjct: 567 HRFFEKDMD 575


>gi|153004340|ref|YP_001378665.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027913|gb|ABS25681.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 465

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 4/166 (2%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
            ++  L+ +D L+ L N      +L          S++F D+D+FK +ND  GH  G ++
Sbjct: 284 RKVEHLAYLDDLTHLYNTRYLEVALQRELGGGRAFSVLFMDLDHFKAVNDQHGHLSGSRL 343

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +   L         + R GG+E+     G     A  +A  +R+ IE+ +     G 
Sbjct: 344 LVEVGRVLRSCVREEDVIVRYGGDEYVVILSGIDSGGALKVAERIRRAIEDHRFLSREGQ 403

Query: 215 SIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFS 259
            + +T S G+A         + ++  AD+A+Y  K+S RN V   S
Sbjct: 404 RVRVTASIGLASFPEHASAKAELLDLADRAMYRGKRSNRNVVYMAS 449


>gi|89071289|ref|ZP_01158457.1| two component diguanylate cyclase [Oceanicola granulosus HTCC2516]
 gi|89043194|gb|EAR49428.1| two component diguanylate cyclase [Oceanicola granulosus HTCC2516]
          Length = 466

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 104 SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  D L+GL N    +  L        +    L+++  D+D+FK IND +GHP GD V+ 
Sbjct: 297 AVTDPLTGLHNRRYALPHLEHMAQTACAQGSGLALMVLDVDHFKTINDRWGHPSGDAVLC 356

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS- 215
            ++ +L         + R+GGEEF  A    S+  A   A  L  +IE +   +    + 
Sbjct: 357 EIARRLRDNVRPGDLLARIGGEEFVVAMADVSDGLARHTAERLCNVIEEAPFPLPGRTTA 416

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + +T+S G+A          +   AD ALY AK +GRN V
Sbjct: 417 LQVTVSIGVAMAEGMTTSEELFNSADAALYRAKTAGRNTV 456


>gi|220934896|ref|YP_002513795.1| putative diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996206|gb|ACL72808.1| putative diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 778

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 83/173 (47%), Gaps = 11/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           + L    +++  LS  D L+G  N       L         Y   +S+V FD+D FK++N
Sbjct: 608 QRLIEQNHQLELLSITDKLTGAYNRLKLDEVLQQQHALAERYKRPVSVVMFDLDDFKRVN 667

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD ++   ++ ++ +       GR GGEEF      ++  +AA LAN +R  +
Sbjct: 668 DTHGHHAGDLILRRFTELVLSLARKSDVFGRWGGEEFLLICPETTALDAADLANRVRVQL 727

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                          T+S+GIAE    + ++  I  AD+ LY AK+ GRNRVV
Sbjct: 728 AEIVFEEVGTQ----TVSSGIAELRPSQSVNDWISHADKRLYQAKQQGRNRVV 776


>gi|196041809|ref|ZP_03109098.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99]
 gi|196027303|gb|EDX65921.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99]
          Length = 567

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 88/175 (50%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++        +  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQA-- 250

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 251 PFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 305


>gi|13470977|ref|NP_102546.1| hypothetical protein mlr0825 [Mesorhizobium loti MAFF303099]
 gi|14021720|dbj|BAB48332.1| mlr0825 [Mesorhizobium loti MAFF303099]
          Length = 418

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 60/175 (34%), Positives = 89/175 (50%), Gaps = 8/175 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKL---SIVFFDIDYFKQIN 143
           L+ +        +L+  D L+ + N  AF   +      N+ +   +++  DID FK IN
Sbjct: 225 LESVKSKLEEYKRLADTDPLTQIRNRRAFDKEITRIYNSNKGILFNALILADIDRFKDIN 284

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHPVGDK+I  +++         MFV R GGEEFA    G+SE     +A  +R +I
Sbjct: 285 DRYGHPVGDKIIQIIAEIFQTSIRGDMFVARTGGEEFALIIEGASEDATYEIAERIRALI 344

Query: 204 ENSQINISS-GPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           E +    S  G +   +T+S GI      E    +  +AD+ALY +K SGRNRV 
Sbjct: 345 EQTPFTSSQTGMNYGTVTVSMGICMASEAEGPEDLYTKADRALYRSKVSGRNRVT 399


>gi|120556492|ref|YP_960843.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120326341|gb|ABM20656.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 364

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 67/267 (25%), Positives = 113/267 (42%), Gaps = 22/267 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFF---------SIFIATVIFIANIFLF--YIGLT 56
            L  +L       +  P  F ++  + F         +I +   +    +F F    G++
Sbjct: 84  LLFTYLIASGGEGNTGPLWFYVFPPLLFYLTSLKGGTAILLFCYLLAVLVFQFPDMPGVS 143

Query: 57  PFYGLEYILVENLSLVIISITISLL-LGYISGSILKELFISYNRISQLSRIDCLSGLLNH 115
             Y  ++ +    +L   SI   +L  G +      +L          +R D L+GL N 
Sbjct: 144 AEYSTDFKIRFFATLTFESIFCFVLEAGRLRAR--NKLVALAQAHEHAARTDELTGLANR 201

Query: 116 SAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
                      S         S+V  D+D FK+IND+FGH  GD+V+   +D +  +   
Sbjct: 202 RDMQGRLNTEFSRFERSGHHFSVVLIDLDLFKRINDDFGHDAGDEVLRQFADLVRQMVRQ 261

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
                R GGEEF      ++  +A  LA  LR  +  ++ +     ++ +TISAG+    
Sbjct: 262 SDVAARWGGEEFLLLLPDTTLLQALTLAERLRAEVAATRFHHRE-QTLPVTISAGVCSIS 320

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRV 255
               I+ ++ +AD  LY AK+SGRNR+
Sbjct: 321 KSGSINELLKQADVQLYNAKESGRNRI 347


>gi|330505055|ref|YP_004381924.1| response regulator WspR [Pseudomonas mendocina NK-01]
 gi|328919341|gb|AEB60172.1| response regulator WspR [Pseudomonas mendocina NK-01]
          Length = 340

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L + D L+GL N   F   L            +LS++  D+DYFK  N
Sbjct: 158 QQLLDTNLVLQRLIKSDSLTGLANRRYFDEYLEIEWSRALRDQSELSLLMIDVDYFKAYN 217

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D  GH  GD+V+  + + L            R GGEEFA    G++   A + A  +R+ 
Sbjct: 218 DQHGHVAGDEVLRRVGESLRSSCTRATDLAARYGGEEFAVIMPGTAAGGARLQAEKIRRA 277

Query: 203 IENSQINISS-GPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVV 256
           +E   I      P   I++S GIA      +    +++ +AD+ LY+AK SGRN+VV
Sbjct: 278 VEAMGIPHDLPKPGSPISVSIGIATIRPSVEHDPLSLVIKADEGLYLAKHSGRNQVV 334


>gi|225848049|ref|YP_002728212.1| diguanylate cyclase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644455|gb|ACN99505.1| diguanylate cyclase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 437

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/194 (32%), Positives = 98/194 (50%), Gaps = 15/194 (7%)

Query: 75  SITISLLLGYISGSILKELFI----SYNRISQLSRIDCLSGLLNHSAFI-------SSLG 123
           S+ + LLL  I  + LK LFI    S + +S+++  D L+G  N            S   
Sbjct: 239 SLAVYLLLKDIENASLKLLFILNRISLDNVSKIALKDSLTGFFNRHMLDVLLSKETSRSK 298

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            +  K+SI+  D+D FK IND +GH VGD+V+   S  +        +  R GGEEF   
Sbjct: 299 RHGYKISILMMDLDNFKNINDIYGHLVGDEVLMHFSRIVKNNLRESDYPFRYGGEEFLIL 358

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              + E+ A ++A  +RK +E+ +  +       IT+S G+ E  + +     I  AD+ 
Sbjct: 359 LPHTDEEGALVVAERIRKSVESYKFPVIE----RITVSCGVREIKNLDNPYIDIEEADRY 414

Query: 244 LYVAKKSGRNRVVC 257
           LY+AKK+G+NR V 
Sbjct: 415 LYIAKKTGKNRCVY 428


>gi|242278837|ref|YP_002990966.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
 gi|242121731|gb|ACS79427.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
          Length = 449

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 97/204 (47%), Gaps = 18/204 (8%)

Query: 72  VIISITISLLLGYISGS-----ILKE----LFISYNRISQLSRIDCLSGLLNHSAFIS-- 120
           ++  +T+ + L Y+  S     +LK     +      +  ++  D L+G+ N    +   
Sbjct: 243 ILPFLTLVVCLFYLVASGICMVVLKREAGNIKEQEEHLYFMATKDYLTGVSNRRHVMELG 302

Query: 121 --SLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
              L ++      LS++  DIDYFK IND FGH VGD+ ++  S     V  +    GR 
Sbjct: 303 QQMLAAHQRSACNLSVLVLDIDYFKTINDQFGHEVGDRALSSFSKLCSGVLRSSDVFGRF 362

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           GGEEF A    +   EA  +A  +R+ +E   +N    P   +T+S G+A     +    
Sbjct: 363 GGEEFLAVLHDTEIDEAVEVAERMRRTVEKGSVNSDGLP--QLTVSIGVAVDFPGDDFEM 420

Query: 236 IIYRADQALYVAKKSGRNRVVCFS 259
           II RAD+AL+ AK  GRN V  + 
Sbjct: 421 IIRRADEALFKAKSKGRNLVEVYD 444


>gi|149914317|ref|ZP_01902848.1| diguanylate cyclase response regulator [Roseobacter sp. AzwK-3b]
 gi|149811836|gb|EDM71669.1| diguanylate cyclase response regulator [Roseobacter sp. AzwK-3b]
          Length = 463

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 16/183 (8%)

Query: 91  KELFISYNRIS---QLSRIDCLSGLLNHSA---FISSL----GSYNEKLSIVFFDIDYFK 140
           ++      ++    + + ID L+GL N      F+  L           +++  D+D+FK
Sbjct: 275 RKAEAMREQLQTGLEAAVIDPLTGLYNRRYALPFLDRLIDETRRDGRGFAVMVADLDHFK 334

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND  GH  GD V++ ++  L         + R+GGEEF      +   EA+ +A  L 
Sbjct: 335 RINDRHGHAAGDAVLSQIARLLKSNLRDEDMIARIGGEEFLIVMPDTGRDEASRMARRLC 394

Query: 201 KIIENSQINI-SSGPSIHITISAGIA---ERCHKEP--ISTIIYRADQALYVAKKSGRNR 254
             +  S +++ SS   +++TIS G      R   E   + T++  AD+ALY +K  GRN 
Sbjct: 395 AAVRRSPLHVMSSEAPLNVTISIGATLGHPRPDAETPRVDTLLDEADRALYGSKSDGRNM 454

Query: 255 VVC 257
           V  
Sbjct: 455 VTF 457


>gi|21243537|ref|NP_643119.1| hypothetical protein XAC2810 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109102|gb|AAM37655.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 356

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 13/173 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           ++   +  + + +R D L+GL N  AF            +  + LS+   D+D+FK +ND
Sbjct: 188 QMDALHADLVEQTRTDPLTGLPNRRAFAVALAAATEQTRAVGQPLSVALLDVDHFKTVND 247

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD V+  LS  L         + R GGEEF      ++  +A +    LR+ + 
Sbjct: 248 VHGHDQGDAVLRELSTLLRAHMAGAGTIARYGGEEFVLLLPNANLLQARVQCEYLRQSVA 307

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              I +       +T+S G+A    +E +  +I RADQALY AK+ GR++VV 
Sbjct: 308 AMTIALP------VTVSIGVATLYPQESVEAVIKRADQALYAAKRGGRDQVVA 354


>gi|260893654|ref|YP_003239751.1| diguanylate cyclase [Ammonifex degensii KC4]
 gi|260865795|gb|ACX52901.1| diguanylate cyclase [Ammonifex degensii KC4]
          Length = 267

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 11/168 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++      D L+GL N  A        +         L +   D+D FK +ND +GH  G
Sbjct: 94  QLKDRVERDPLTGLYNRLALYPILSQMLKKSQEEESPLVVAMLDLDNFKTVNDEYGHHAG 153

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+   +  +     +   V R GGEEF      +S  +A +    +R  I  +     
Sbjct: 154 DEVLRAAAGIIKKNLRSGDKVFRYGGEEFLIVLPNTSLDKAVVALERIRGQIAANLF--I 211

Query: 212 SGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVC 257
            G    IT S G A    K  +    +I +AD+ALY AK+ G+N+VV 
Sbjct: 212 PGTETSITASIGAAGYTGKGSVSPDDLILQADKALYRAKREGKNKVVL 259


>gi|153213495|ref|ZP_01948806.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|124115959|gb|EAY34779.1| GGDEF family protein [Vibrio cholerae 1587]
          Length = 791

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 22/228 (9%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI------------- 95
           F +   + P +     ++    ++ +++ +SL++  I     +EL++             
Sbjct: 554 FSYVFIIEPHWWQRKEVIVMAGMLFLALAVSLVMWRIRILKRRELYLVEQVALQTQKLRL 613

Query: 96  SYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
              +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIND + H
Sbjct: 614 QAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIAVLDIDHFKQINDRYSH 673

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+ I  +S +L+   G    V R GGEEF    +G   ++A      LR  IE   +
Sbjct: 674 IIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVG-DPKQAWGYFEKLRCKIEQVDL 732

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  + P +++T+S G A+    E   T++  AD AL  AKK GRNRVV
Sbjct: 733 SAVA-PGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 779


>gi|288919747|ref|ZP_06414073.1| diguanylate cyclase [Frankia sp. EUN1f]
 gi|288348847|gb|EFC83098.1| diguanylate cyclase [Frankia sp. EUN1f]
          Length = 494

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 98/229 (42%), Gaps = 17/229 (7%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
            A + L  IG +    L+    + +  +   I+++L+L     S   E   + +   + S
Sbjct: 274 AAPVGLLVIGASDLLALDQDYQDFVETIAGQISLALMLAR---SREAERTRAAS-ARRSS 329

Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
             D L+GL N ++F+ SL            + +++F D+D FK +ND  GH  GD ++  
Sbjct: 330 LHDALTGLPNRTSFLRSLGRALLQSQRRGGRAAVLFVDLDGFKAVNDTLGHRAGDDLLRE 389

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSI 216
           ++ +L         V R  G+EFA       +  +   +A D+   +  ++     G   
Sbjct: 390 IAGRLRRAVRPADVVARFAGDEFAVLCEEIATVGDVEAIARDVVDALALAR----RGDRP 445

Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            +  S G+A           ++  AD A+Y AK+ GR R + + +   +
Sbjct: 446 TVAASVGVALSGPGLLDPEELLNAADIAMYAAKRQGRGRYLLYEEGMRS 494


>gi|254784461|ref|YP_003071889.1| diguanylate cyclase with PAS/PAC sensor [Teredinibacter turnerae
           T7901]
 gi|237686179|gb|ACR13443.1| diguanylate cyclase with PAS/PAC sensor [Teredinibacter turnerae
           T7901]
          Length = 474

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 10/180 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S LK       ++ +LS  D ++G+ N   F+            Y+    ++  D+D FK
Sbjct: 295 SRLKAQEEEEQKLFKLSSTDSMTGVFNRGYFLELANRAHHQGERYDHNFCVMMLDVDNFK 354

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND FGH  GD+ +  + + L         +GR+GGEEFA     SS  +  +LA+ + 
Sbjct: 355 SINDRFGHAEGDRALTQIGNILKNSVRKTDIIGRVGGEEFAIVLPESSIDQGVVLADKIL 414

Query: 201 KIIENSQINISSGPSIH--ITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             IE+++++      +    T+S G +A+    E  + ++YRADQ LY AK +G+ +VV 
Sbjct: 415 YNIEDARMHSDDPDGLGGCPTLSIGLVAKGDENETFNELLYRADQLLYKAKHTGKAKVVY 474


>gi|217958216|ref|YP_002336760.1| sensory box/GGDEF family protein [Bacillus cereus AH187]
 gi|217064052|gb|ACJ78302.1| sensory box/GGDEF family protein [Bacillus cereus AH187]
          Length = 567

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 89/175 (50%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTNNHTQDEMRQLATSVLSCFQA-- 250

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 251 PFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 305


>gi|56416693|ref|YP_153767.1| response regulator PleD [Anaplasma marginale str. St. Maries]
 gi|222475058|ref|YP_002563473.1| Putative two-component response regulator with GGDEF and receiver
           domains [Anaplasma marginale str. Florida]
 gi|255003037|ref|ZP_05278001.1| response regulator PleD [Anaplasma marginale str. Puerto Rico]
 gi|255004160|ref|ZP_05278961.1| response regulator PleD [Anaplasma marginale str. Virginia]
 gi|56387925|gb|AAV86512.1| hypothetical protein AM475 [Anaplasma marginale str. St. Maries]
 gi|222419194|gb|ACM49217.1| Putative two-component response regulator with GGDEF and receiver
           domains [Anaplasma marginale str. Florida]
          Length = 455

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 14/187 (7%)

Query: 81  LLGYISGSILKELFISYNRIS-----QLSRIDCLSGLLNHSAFI-------SSLGSYNEK 128
           LL   +  + ++ +    R+      ++S  D L+G  N   F        +      + 
Sbjct: 266 LLARTNVQVKRKRYQDALRMHLEDNAEMSITDPLTGCYNRRYFDMHFQNIVNEARDKGKD 325

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS++  D+D+FK++ND FGH VGD+++  L  ++         + R GGEEF      + 
Sbjct: 326 LSVMIIDVDHFKRVNDTFGHTVGDELLQQLRKRIFDNIRISDLLARFGGEEFVIILPETG 385

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
             +A   A  LR+ I     N S G  +  T+S G+AE    E     + RAD+ LY AK
Sbjct: 386 IDQAVTAAERLRQKIAEEPFNTSGGA-LEKTVSIGVAEFRPSEEAKDFLNRADKCLYSAK 444

Query: 249 KSGRNRV 255
           ++ RN V
Sbjct: 445 ET-RNAV 450


>gi|304312445|ref|YP_003812043.1| 7TM receptor family protein [gamma proteobacterium HdN1]
 gi|301798178|emb|CBL46400.1| 7TM receptor family protein [gamma proteobacterium HdN1]
          Length = 656

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 93/178 (52%), Gaps = 11/178 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           +++L  +  ++ ++S ID LS L N   F                 +S++ FD+D+FK+I
Sbjct: 462 VQKLASTNEQLERMSIIDELSQLHNRRYFNHKFETDFKTAYREQCSISVIMFDVDHFKKI 521

Query: 143 NDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND++GH VGD  IA ++  L   V      V R GGEEF      ++ Q A  +A ++R+
Sbjct: 522 NDHYGHLVGDYCIAHVAGILKKHVTRASDIVARYGGEEFVVVLNNTNAQGALHVAEEIRR 581

Query: 202 IIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +    +    G  I +T+S G+A     H + ++ ++  AD ALY AK++GRN++  
Sbjct: 582 EVFTIPMQH-DGMQIPMTVSGGVAAGIPHHYQGMAELLNLADNALYKAKQNGRNQIAI 638


>gi|157160794|ref|YP_001458112.1| RNase II stability modulator [Escherichia coli HS]
 gi|170020348|ref|YP_001725302.1| RNase II stability modulator [Escherichia coli ATCC 8739]
 gi|157066474|gb|ABV05729.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli HS]
 gi|169755276|gb|ACA77975.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Escherichia coli ATCC 8739]
          Length = 661

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINHADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|94970869|ref|YP_592917.1| diguanylate cyclase [Candidatus Koribacter versatilis Ellin345]
 gi|94552919|gb|ABF42843.1| diguanylate cyclase [Candidatus Koribacter versatilis Ellin345]
          Length = 472

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 62/258 (24%), Positives = 113/258 (43%), Gaps = 20/258 (7%)

Query: 20  ESFSPHTFMIYFSIFFSIF-----IATVIFIANIFLFYIGLTPFYGLEYI-----LVENL 69
           +S  P  F+++  +  ++F      A +  +    +  IG    +G   I       + +
Sbjct: 207 QSRLPLLFLVFPVLVLAVFKRGFAGAALAVVTIAAIGVIGAVKGFGPITIGSGNAFTDRV 266

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-- 127
            L+   +   +   +   ++L E    + R++ L  +D L+ L N   F     S     
Sbjct: 267 LLLQAYLACVVATSFPLAAVLGERDRLHERLTGLVYVDWLTDLPNRRHFDMRFNSEWRRA 326

Query: 128 -----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFA 181
                 +S++  D+D FK+ ND +GH  GD+ +A L   +   V  +  FV R GGEEF 
Sbjct: 327 MRSRMPISLMMIDVDQFKEYNDAYGHMAGDRCLAKLGSVMAASVKRSADFVARYGGEEFV 386

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYR 239
                ++   A I+A ++ + +   ++  +  P   +++S GIA          S ++  
Sbjct: 387 VILPETTATGAGIVAANVMEAVAALELPHAGSPHKQVSVSVGIAYAHPDIGAEPSELVRS 446

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD+ALY AK+ GRN V  
Sbjct: 447 ADRALYTAKRDGRNCVRV 464


>gi|90420618|ref|ZP_01228525.1| possible signaling protein with EAL, GGDEF domains [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335346|gb|EAS49099.1| possible signaling protein with EAL, GGDEF domains [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 808

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 7/187 (3%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYF 139
             ++   + E       I+ ++  D L+GL N  +F   L +     +  +IV  D+D F
Sbjct: 356 AILTYDDMTEARQVQATITHMAYHDALTGLPNRRSFQDELKARFDSAKPTTIVMIDLDRF 415

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND  GHPVGD ++  ++D+L         + RLGG+E A    G  E  +  LA  +
Sbjct: 416 KAVNDTLGHPVGDALLIQVADRLRACCNPNDLIFRLGGDELAI-LPGDDEH-SDTLARRV 473

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +  E  +   +    I I  S G+A     +    ++ +AD ALY AKK+GRNR+  + 
Sbjct: 474 VEGFE--RPFTADKHRISIGCSVGLATADDVDDPDLVVRQADLALYKAKKNGRNRIERYE 531

Query: 260 DIENNTC 266
                  
Sbjct: 532 SGMMEDA 538


>gi|332307907|ref|YP_004435758.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175236|gb|AEE24490.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 496

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 108/246 (43%), Gaps = 25/246 (10%)

Query: 26  TFMIYFSIFFSIFIAT--------VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISIT 77
            F+I+  +   ++IA         +    +  L  I +  F   EY+L+   +++I++  
Sbjct: 238 AFVIFLLVLPHMWIACTESALFNMLSLTYSCLLIAIFVNLFGLNEYVLIYQFAIIIVA-- 295

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLS 130
                  + G  +  L     ++  +   D L+   +   F+                LS
Sbjct: 296 ----ANALFGIAVPALVADNEKLQAIITTDALTQAASRQHFMQQAERAVNRSLNDEMPLS 351

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++ FD+D FK++ND FGH  GDK +  +     +       +GR GG+EF A    S+  
Sbjct: 352 LIMFDMDNFKKVNDTFGHSAGDKALQSVCQVAQLSLRPTDLLGRFGGDEFVALLPDSTNL 411

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           EA  +A  +   +  ++  ++ G  IH   S G+A+    +  + +   AD+ALY AK+ 
Sbjct: 412 EAQQIAQRILTSVNKAE--VAPGQPIH--CSFGVAQLSQDQNFTELFNAADKALYKAKQQ 467

Query: 251 GRNRVV 256
           GRN +V
Sbjct: 468 GRNTIV 473


>gi|309701753|emb|CBJ01064.1| putative diguanylate cyclase [Escherichia coli ETEC H10407]
          Length = 347

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 168 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 225

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 226 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 285

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 286 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 343


>gi|302187659|ref|ZP_07264332.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 308

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 8/170 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y   +Q +  D L+   N  A    L         + + LS++  DID+FK++ND +GH 
Sbjct: 140 YRIATQTALRDPLTSTGNRIAMDQGLAREIEISRRHKQPLSLLMLDIDHFKKVNDEYGHH 199

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  L         V R GGEEF      +    A ++   L + + N +  
Sbjct: 200 TGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGADSAELIGQRLCQAVRNLEFR 259

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               P++ +T+S G +     E   +++ RAD ALYVAK+ GRNR+   S
Sbjct: 260 -ELSPALTMTVSLGCSTLLPTETADSLLRRADNALYVAKREGRNRIAMAS 308


>gi|229159708|ref|ZP_04287718.1| Sensory box/GGDEF [Bacillus cereus R309803]
 gi|228623787|gb|EEK80603.1| Sensory box/GGDEF [Bacillus cereus R309803]
          Length = 569

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 89/175 (50%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++      N +  +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNKMIVENIEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKKHTQDEMRQLATSVLSCFQA-- 252

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 253 PFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 307


>gi|254417547|ref|ZP_05031285.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196175645|gb|EDX70671.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 709

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 12/192 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS------LGSYNEK--LSIVFFDI 136
            S + +        ++   +  D L+ L N + F+        L   N+    +++F D+
Sbjct: 259 FSVTDISHHKHVEEQLCHDALHDNLTRLPNRTLFMERVNHAIKLAKRNQDYLFAVLFLDL 318

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAIL 195
           D FK +ND+ GH VGD+++   + QL     T   V  L G+EF          ++A  +
Sbjct: 319 DRFKVVNDSLGHDVGDQLLTATARQLEKCVRTTDTVAHLSGDEFTILLEDIKDIKDATRV 378

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
           A  ++  +  +  N+ +   +  + S GIA      E    I+  AD A+Y AK+ G+ R
Sbjct: 379 AERIQATL-KAPFNL-NNHEVFTSASIGIALSSTGYERSEDILRDADIAMYRAKELGKAR 436

Query: 255 VVCFSDIENNTC 266
              F  I +   
Sbjct: 437 HEIFDKIMHARA 448


>gi|184157028|ref|YP_001845367.1| response regulator [Acinetobacter baumannii ACICU]
 gi|239501295|ref|ZP_04660605.1| response regulator [Acinetobacter baumannii AB900]
 gi|260555649|ref|ZP_05827869.1| response regulator [Acinetobacter baumannii ATCC 19606]
 gi|332872603|ref|ZP_08440571.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6014059]
 gi|183208622|gb|ACC56020.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Acinetobacter baumannii ACICU]
 gi|260410560|gb|EEX03858.1| response regulator [Acinetobacter baumannii ATCC 19606]
 gi|322506927|gb|ADX02381.1| Diguanylate cyclase [Acinetobacter baumannii 1656-2]
 gi|323516794|gb|ADX91175.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332739132|gb|EGJ69991.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6014059]
          Length = 473

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 112/248 (45%), Gaps = 17/248 (6%)

Query: 22  FSPHTFMIYFSIFFSIFIATVI--FIANIFLFYI--GLTPFYGLEYIL-VENLSLVIISI 76
             P   +I+ +I +   I  +I  F +   ++++       Y  +Y+    ++ + +I +
Sbjct: 225 LYPIAALIWCAIRYKPIIVALITSFTSAYIIYHVSGHYLLLYPQDYLGNTISIRIGLIMM 284

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------- 129
           T++ L      ++  EL     ++      D L+  L    F+ S+    EK+       
Sbjct: 285 TVAPLTVSSISALHSELI---QKLQHAIAHDELTSSLTRRQFLQSVRLLQEKVQKENKTS 341

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +    D+D+FK++ND++GH +GD+ +      +  +      +GR GGEEFA     ++ 
Sbjct: 342 AFFMLDVDHFKKVNDSYGHLIGDRALQTCVTTIQNILHPHDLLGRFGGEEFAIFIPDTTR 401

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVA 247
           + A  LA  +R  I    I +     I + +S GI+         I ++   AD ALY A
Sbjct: 402 EAAFELAERIRIQISQQPIYVYGKLPIFVQVSIGISLYSPSYHRSIESLFKEADDALYQA 461

Query: 248 KKSGRNRV 255
           K+ GRNRV
Sbjct: 462 KRQGRNRV 469


>gi|120601326|ref|YP_965726.1| diguanylate cyclase [Desulfovibrio vulgaris DP4]
 gi|120561555|gb|ABM27299.1| diguanylate cyclase [Desulfovibrio vulgaris DP4]
          Length = 630

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 105/243 (43%), Gaps = 20/243 (8%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI 85
             ++ F    ++FIAT   +    +      P  G   +L+ + +    S T++ L   +
Sbjct: 240 VMVVLFLTVIAVFIATAHRVGPFHM------PTQGEAVMLLVSFA---ASTTLTTLGLSL 290

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDY 138
              +L +         Q + ID L+GL N + F          L   +  LS++ FD D+
Sbjct: 291 YRHLLAQAGARATMWEQRAGIDPLTGLCNRARFDEVLLAELQRLQRQDSPLSLMMFDADH 350

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           FK  ND +GH  GD  +  ++  L  V       V R GGEEF     G+    A  LA 
Sbjct: 351 FKPYNDMYGHVAGDACLKRVAGVLRAVAHRASDVVARYGGEEFVCILPGTDRDSAYALAE 410

Query: 198 DLRKIIENSQINISSGPSIHI-TISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNR 254
            +R+ +    I     P   + T+SAG+     C       ++ + D+ALY AK +GR+R
Sbjct: 411 KVRQGVRALAIPHVGSPVAGVLTVSAGVVTVHGCDGLDPQEVVAQVDRALYQAKGAGRDR 470

Query: 255 VVC 257
           V+ 
Sbjct: 471 VMV 473


>gi|27364013|ref|NP_759541.1| sensory box/GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|27360130|gb|AAO09068.1| Sensory box/GGDEF family protein [Vibrio vulnificus CMCP6]
          Length = 591

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/193 (28%), Positives = 86/193 (44%), Gaps = 13/193 (6%)

Query: 78  ISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEK 128
           + ++   IS   L E  L  +   + +LS +D L+ + N   F   L             
Sbjct: 384 VLIMARDISERYLAEQKLEAANLELEKLSFMDSLTQVSNRRRFDEQLNTLWFHHAREKLP 443

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGS 187
           L+I+  DID+FK+ ND +GH  GD+ +  ++     V   +   V R GGEEFA     +
Sbjct: 444 LTIMLCDIDFFKEFNDRYGHQAGDEALIQVATVFSQVVSRSSDCVARYGGEEFALLLPNT 503

Query: 188 SEQEAAILANDLRKIIENSQINISSGP-SIHITISAG-IAERCHKEPISTI-IYRADQAL 244
           + + A  +A  +   I  S I       +  +TIS G ++     E +  + +  AD AL
Sbjct: 504 TAEGALKVAEKIHAYIAESNIAHQGSKIAGRVTISIGLVSYIPSPEDVPDMGVALADSAL 563

Query: 245 YVAKKSGRNRVVC 257
           Y AK  GRNR   
Sbjct: 564 YQAKSDGRNRTCV 576


>gi|26988227|ref|NP_743652.1| response regulator/GGDEF domain-containing protein [Pseudomonas
           putida KT2440]
 gi|24982967|gb|AAN67116.1|AE016340_7 response regulator/GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 335

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  S   + +L   D L+GL N   F   L           ++LS++  D+DYFK  N
Sbjct: 157 QQLLDSNLMLQRLMNSDGLTGLSNRRHFDEYLELEWRRAMREQQQLSLLMIDVDYFKVYN 216

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D+FGH  GD+ +  +++ +            R GGEEFA     +S   A ++A  LR+ 
Sbjct: 217 DSFGHLAGDEALRQVAEAIRSSCSRPTDLPARYGGEEFALVLPNTSPGGARLVAEKLRQT 276

Query: 203 IENSQINISS-GPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255
           +    I  ++      +T+S G+A +          +I  AD+ LY+AK  GRN+V
Sbjct: 277 VLGLGIPHTAPTADTFLTVSIGLATQTPAIGSHCRQLISAADKGLYLAKNGGRNQV 332


>gi|229137427|ref|ZP_04266038.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST26]
 gi|228645985|gb|EEL02208.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST26]
          Length = 569

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 89/175 (50%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTNNHTQDEMRQLATSVLSCFQA-- 252

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 253 PFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 307


>gi|146281871|ref|YP_001172024.1| GGDEF family protein [Pseudomonas stutzeri A1501]
 gi|145570076|gb|ABP79182.1| GGDEF family protein [Pseudomonas stutzeri A1501]
          Length = 501

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 106/243 (43%), Gaps = 16/243 (6%)

Query: 18  NLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISIT 77
           N   F+  +  +++  + S  I++ I        + G  P        V +    +  + 
Sbjct: 269 NAVPFAILSLAVFW--WLSKLISSPIRALADTAEHWG-APEAAQRISTVNSWYFEVARLK 325

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFF 134
           +++L G    S+L++   +   +   S  D L+GL N      +L  +   ++  + +  
Sbjct: 326 VAMLTGV---SLLQQKMGA---LEAASMTDPLTGLRNRRGLELALKQFELLDQGYAALAL 379

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FKQ+ND  GH VGD+V+ FL+ ++         + R+GGEEF      +    A++
Sbjct: 380 DIDHFKQVNDQHGHDVGDEVLRFLAAEMRECSRPTDVLCRMGGEEFLMLLPETDATGASV 439

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            A  L   +  +     +     +T S GIA              AD ALY AK++GR+R
Sbjct: 440 AAERLLTRLRQTTSPTGT----PVTASVGIAFSGDYPNADATFKAADAALYQAKRAGRDR 495

Query: 255 VVC 257
            V 
Sbjct: 496 AVV 498


>gi|152997497|ref|YP_001342332.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150838421|gb|ABR72397.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 384

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 68/247 (27%), Positives = 119/247 (48%), Gaps = 16/247 (6%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI----LVENLSLVIISI 76
           +F  H F+     + ++ +  V+FI+ +    IGL  +   +      L+  +SL+I S 
Sbjct: 133 AFLDHAFLATDVSWSTVLLWCVLFISAL---AIGLAWWLSGDTFRASGLISIVSLLIASH 189

Query: 77  TIS---LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVF 133
            +S        +S   L  ++       +++ +D ++ L    A    L   ++  +I  
Sbjct: 190 FVSSDIQFDALLSAQFLLWIWFLLMESHRMAYLDDMTKLPGRRALNEQLVGLSKYYAIAM 249

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D+FK+ ND FGH +GDKV+  ++ QL   F +P    R GGEEF     G    E  
Sbjct: 250 VDVDHFKKFNDTFGHDMGDKVLKSVAAQLKQ-FSSPGRAFRFGGEEFTIVFRGKRLSEVD 308

Query: 194 ILANDLRKIIENSQINISS-----GPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
            +   +R+ IE++ + +          +++T S G+A     E   +++ RAD+ALY +K
Sbjct: 309 GILELIRENIESALVEVFDPKKKQETEVNVTASIGVAFAVVGESSDSVLKRADEALYQSK 368

Query: 249 KSGRNRV 255
           K GRNRV
Sbjct: 369 KKGRNRV 375


>gi|124268041|ref|YP_001022045.1| GGDEF domain-containing protein [Methylibium petroleiphilum PM1]
 gi|124260816|gb|ABM95810.1| GGDEF domain containing protein [Methylibium petroleiphilum PM1]
          Length = 568

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----------LSIVFFDIDYFK 140
           EL     R+S     D L+ + N      +  +   K           L++   DID FK
Sbjct: 391 ELEDEIRRLSDEVSTDPLTQIANRRGLQQAFETEQAKNQRAAQGEGATLAVALIDIDNFK 450

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND  GH  GD  + FL+ ++         + R GGEEF     G+   EA  +   ++
Sbjct: 451 KLNDRLGHASGDAALQFLTHRVAQALRPGDTLARYGGEEFVVLLPGTPLDEAQRVLTRVQ 510

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +            + +T SAG++     E +   + RAD+ALY AK SG+NR   
Sbjct: 511 RTLSAELFMSDEQGQVFVTFSAGVSLYRPGERLEQSLERADEALYEAKHSGKNRTCA 567


>gi|225872142|ref|YP_002753597.1| GGDEF domain protein [Acidobacterium capsulatum ATCC 51196]
 gi|225792482|gb|ACO32572.1| GGDEF domain protein [Acidobacterium capsulatum ATCC 51196]
          Length = 367

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/237 (26%), Positives = 102/237 (43%), Gaps = 12/237 (5%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE 92
           I   + I  ++      +  +   P    + +   +  L+ +S+   L   +I+  +   
Sbjct: 122 IMDGLLIVMILLRVLRIIRAVYAPPVNRAQTLTPVDSLLIYLSLITGL--AFIAAIMWLS 179

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDN 145
           L    + +  ++  D L+GLLN  AF   L      L       +++  DID FK IND+
Sbjct: 180 LSAQRDELRLMAETDGLTGLLNRRAFEEILRHELRSLDGSKADTALLLLDIDQFKTINDD 239

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD+VI  +S  +         + R GG+EF       +  +A  +A   R  I  
Sbjct: 240 LGHLAGDEVIRRVSTAIKTAARPSDVLARFGGDEFVVLLRHLNGLQAMAVAERFRFEIAA 299

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            Q        + IT S G+A     +   ++I RAD+ALY +K +GRNRV    D E
Sbjct: 300 LQ---GLPNHLTITASVGLAFLHGMDSPYSLIGRADEALYRSKSNGRNRVSVGDDFE 353


>gi|239616993|ref|YP_002940315.1| response regulator receiver modulated diguanylate cyclase
           [Kosmotoga olearia TBF 19.5.1]
 gi|239505824|gb|ACR79311.1| response regulator receiver modulated diguanylate cyclase
           [Kosmotoga olearia TBF 19.5.1]
          Length = 469

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 7/163 (4%)

Query: 105 RIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            ID L+ L N  A +S L  Y E        L++   D+D FK+IND +GH  GD V+  
Sbjct: 306 EIDFLTSLFNRKATLSRLKEYIELAKRRMLSLTVAMLDVDDFKEINDTYGHLFGDTVLKE 365

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +             VGR GGEEF     G    EA      +   + N      +G  I 
Sbjct: 366 IGKIFRNSMRKSDIVGRYGGEEFLIIFPGIKAAEAVEALERVLDELRNYDWRAVTGKPIK 425

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +T+SAG+AE      +  ++ +AD  LY AK+SG++R+  + +
Sbjct: 426 VTVSAGVAEFSDDTTLRELVNKADNELYKAKRSGKDRISVYRE 468


>gi|206978155|ref|ZP_03239037.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97]
 gi|222094380|ref|YP_002528439.1| sensory box, ggdef family protein [Bacillus cereus Q1]
 gi|206743627|gb|EDZ55052.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97]
 gi|221238437|gb|ACM11147.1| sensory box, GGDEF family protein [Bacillus cereus Q1]
          Length = 567

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 89/175 (50%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTNNHTQDEMRQLATSVLSCFQA-- 250

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 251 PFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 305


>gi|83312993|ref|YP_423257.1| GGDEF domain-containing protein [Magnetospirillum magneticum AMB-1]
 gi|82947834|dbj|BAE52698.1| FOG: GGDEF domain [Magnetospirillum magneticum AMB-1]
          Length = 558

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 12/201 (5%)

Query: 64  ILVENLSLVIISITISLLLGYISGS--ILKELFISYNRISQLSRIDCLSGLLNHSAFIS- 120
           +L   +S    S    LL+  ++    +  E   ++ R+ +LSR D L+GL N  AF   
Sbjct: 345 LLWREMSRAAWSDDDRLLIDDVANQVGLASEQITNHERMVKLSRTDGLTGLFNRRAFFEE 404

Query: 121 ------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
                  L    +  ++++ D+D FK +ND  GH  GD+ +  + D L+        V R
Sbjct: 405 IARRFHRLKREGKPAALIYVDLDNFKAVNDVHGHQTGDEALLAVRDLLLQHTRPIDLVAR 464

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEP 232
           LGG+EFA     + E  A     D+ +  ++     S  P   +  S G+A     + E 
Sbjct: 465 LGGDEFAIWLEAAEEHIAVKRCQDVLEAAKDLD-RFSGSPEKPLGCSLGVAVHGGSYNEA 523

Query: 233 ISTIIYRADQALYVAKKSGRN 253
           +  +I RAD+A+Y  K+SG+ 
Sbjct: 524 LEDLIARADKAMYEVKRSGKG 544


>gi|86145434|ref|ZP_01063765.1| sensory box/GGDEF family protein [Vibrio sp. MED222]
 gi|85837011|gb|EAQ55131.1| sensory box/GGDEF family protein [Vibrio sp. MED222]
          Length = 434

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 62/188 (32%), Positives = 84/188 (44%), Gaps = 18/188 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDI 136
           S   + +     N++  LS  D LSG  N   F   L     ++S         +   DI
Sbjct: 253 SFVDISKRKELENKLRNLSEKDALSGCWNRRKFDLELRDECSRVSRYPTREQSCLAILDI 312

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND FGH  GDK I  ++  L        FV R+GGEEF      ++ QEA  + 
Sbjct: 313 DHFKRINDRFGHDYGDKAIQIVAQVLQRECRDTDFVARIGGEEFGVILPHTTPQEADYVL 372

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           N LR  +     N+       +TIS GI     +  ++     AD ALY AK  GRN V 
Sbjct: 373 NRLRIAVSIEFDNV-------VTISGGITNLTSEPALN--YKCADLALYEAKAVGRNNVC 423

Query: 257 CFSDIENN 264
            F D E +
Sbjct: 424 LFLDSEMS 431


>gi|323492736|ref|ZP_08097880.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
 gi|323313111|gb|EGA66231.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
          Length = 348

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/249 (25%), Positives = 115/249 (46%), Gaps = 15/249 (6%)

Query: 22  FSPHTFMIY-FSIFFSIFIATVI-----FIANI--FLFYIGLTPFYGLEYILVENLSLVI 73
           + P  + ++ ++  F +    ++     FIA    F+  + +     +   L  +L LVI
Sbjct: 89  YYPLNYGLFLWAYLFPVVFYFILGRRHGFIATCVGFVLQLAIVLIRMISEDLGSSLHLVI 148

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----- 128
               + + +   +  +  +  +S   + QL+  D L+G+ N  A   +   Y ++     
Sbjct: 149 NFSLVFMTIWVTAHVLEVKRRVSEASLGQLASRDALTGVYNRHALSHNFERYRQESSKLA 208

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           +S++  D+D+FK +ND +GH VGD V++  +  L         V R+GGEEF  A   + 
Sbjct: 209 MSLLILDLDFFKSVNDRYGHDVGDTVLSQTAALL-DSLSDEHLVYRIGGEEFCVALHDTG 267

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
              A + A  +R  IE    N    P I +T S G+        + +++  AD+ LY AK
Sbjct: 268 LDAAKLKAEQIRNSIEQYCFNSPEEP-IALTASIGVYLCNQYANLESVLREADKELYHAK 326

Query: 249 KSGRNRVVC 257
           ++GRN+V  
Sbjct: 327 QNGRNQVKV 335


>gi|315304308|ref|ZP_07874646.1| ggdef domain-containing protein [Listeria ivanovii FSL F6-596]
 gi|313627317|gb|EFR96112.1| ggdef domain-containing protein [Listeria ivanovii FSL F6-596]
          Length = 229

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 65/237 (27%), Positives = 106/237 (44%), Gaps = 18/237 (7%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
             +F    IA+   + N+ L  +    FY +          +I  + ISL++G++S  ++
Sbjct: 1   MGVFILNIIASGFVVINLHLI-LANEAFYWIN---------MITFVVISLVIGFVSAGLM 50

Query: 91  KELFIS---YNRISQLSRIDCLSGLLNHSAFISSLGS----YNEKLSIVFFDIDYFKQIN 143
             +  S   + +  Q S +D L+ L N   F   +         +++++  DID+FK IN
Sbjct: 51  DNMIKSKQLFQKYEQDSTLDYLTQLSNVRQFDEKINHVMDGTIREVTLMLIDIDFFKNIN 110

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D + H  GD ++  L+  L           R GGEEF+   L  S  E    A  +R+  
Sbjct: 111 DTYEHDAGDAILKQLAKILKGNTTDGSEAFRNGGEEFSLILLYCSVDEGNYFAEHIRRET 170

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           E     I +G ++ ITIS G++           +   AD+ALY AK +GRNRV    
Sbjct: 171 EEYDFVIPTGQTVKITISIGVSGCHDGITTSERLFKTADEALYKAKLAGRNRVCIAD 227


>gi|289670223|ref|ZP_06491298.1| hypothetical protein XcampmN_17466 [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 385

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 77/179 (43%), Gaps = 14/179 (7%)

Query: 95  ISYNRISQLSR---IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
            S NR+  L+     D L+G+ N                     LSI F D+D FK++ND
Sbjct: 194 ESENRMRHLAEQASRDALTGVFNRHQLGTALTHEFELASRQGWPLSIAFIDLDDFKRVND 253

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD+V+   +  L  +  T   V R GGEEF      +    A ++   +     
Sbjct: 254 AHGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEFLVILPKTPADAALMVIERILTETA 313

Query: 205 NSQINISSGPSIHITISAGIAERCHK----EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +    G  +HIT SAG+A         E I  ++  AD  LY +K  GRNRV  + 
Sbjct: 314 RTPMAQLPGGPLHITFSAGLATHGGVERQFESIEHLLQAADSTLYRSKHRGRNRVTAYD 372


>gi|260771163|ref|ZP_05880090.1| hypothetical protein VFA_004228 [Vibrio furnissii CIP 102972]
 gi|260613760|gb|EEX38952.1| hypothetical protein VFA_004228 [Vibrio furnissii CIP 102972]
 gi|315179231|gb|ADT86145.1| c-di-GMP phosphodiesterase A-related protein [Vibrio furnissii NCTC
           11218]
          Length = 659

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 77/167 (46%), Gaps = 7/167 (4%)

Query: 105 RIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
            ID L+GL N   F   L      +  L +++ DID FK IND+ GH +GDKVI  +S +
Sbjct: 232 HIDTLTGLYNRLGFTKRLEHLIQNDTPLVMLYLDIDNFKNINDSLGHHIGDKVIKEVSSR 291

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHITI 220
           L  +      +G LGG+EF            A +LA  +  +I  +Q       S  +  
Sbjct: 292 LKRLLPPHAVLGHLGGDEFGLILPEPEHNRSAEMLAERIISLI--NQPFDLHHFSKRLAC 349

Query: 221 SAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           S G +           ++  AD A+Y AK  GRNR++ F+D  N   
Sbjct: 350 SIGSVCYPGDGSDARVLLQNADTAMYEAKDRGRNRLIKFNDQMNKEA 396


>gi|91779457|ref|YP_554665.1| diguanylate cyclase [Burkholderia xenovorans LB400]
 gi|91692117|gb|ABE35315.1| Putative diguanylate cyclase (GGDEF domain) [Burkholderia
           xenovorans LB400]
          Length = 524

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 23/216 (10%)

Query: 55  LTPFYGLEYIL-VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           L P++   +I  V  L+   + + +S LL       L++   +   + +L+  D L+GL 
Sbjct: 301 LAPWWHRNWITAVLTLTFGAVFVMVSWLLSLA----LRDKLRAQAALVRLAATDPLTGLG 356

Query: 114 NHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N     + L           + LS +F DID+FKQ ND +GH  GD+ +  +++ +    
Sbjct: 357 NRRVLDTRLDEEWRRARRSGQPLSALFIDIDHFKQFNDAYGHASGDEALVAVAECISAAV 416

Query: 167 GT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                 V R GGEEFA     +S + A  +A  +R+ ++   +    G S  +T+S G A
Sbjct: 417 RRWVDVVARYGGEEFAVILPDTSAEGALKVAEKIRRKVQGQDVIHGDGESATVTVSVGCA 476

Query: 226 ERCHKE------PISTIIYRADQALYVAKKSGRNRV 255
                E       ++    +    LYVAK +GRNRV
Sbjct: 477 TCVPAEGANALDLLAAADRQ----LYVAKAAGRNRV 508


>gi|77457550|ref|YP_347055.1| diguanylate cyclase with PAS/PAC and GAF sensors [Pseudomonas
           fluorescens Pf0-1]
 gi|77381553|gb|ABA73066.1| putative PAS:GGDEF domain protein [Pseudomonas fluorescens Pf0-1]
          Length = 449

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 13/181 (7%)

Query: 81  LLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSI 131
           LL Y+   +    E    + R+ ++++ D L+ L N       L          +  +++
Sbjct: 264 LLQYVCAQVATAIERQQLHARLRRMAQYDQLTQLPNRELLRDRLKAALNHAREQSGHMAL 323

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQ 190
           ++ D+D FKQ+ND FGH VGD ++  ++++L         V R+GG+EF        +  
Sbjct: 324 LYVDLDRFKQVNDTFGHGVGDMLLQAVANRLKGCVRETDTVARIGGDEFVVLLHSVHAAD 383

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
           +A  +A  +R+++   Q     G ++HI  S G+A    H +    +   ADQ +Y AK+
Sbjct: 384 DADSVAEKIRQVL--VQPMRLDGHNLHIEPSIGVARYPEHGDEEQQLFRHADQVMYAAKR 441

Query: 250 S 250
            
Sbjct: 442 Q 442


>gi|54298266|ref|YP_124635.1| hypothetical protein lpp2324 [Legionella pneumophila str. Paris]
 gi|53752051|emb|CAH13477.1| hypothetical protein lpp2324 [Legionella pneumophila str. Paris]
          Length = 506

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 91/179 (50%), Gaps = 11/179 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           LK+L     ++S+L+  D LS L N   F       I+    Y   L+++  D+D+FK +
Sbjct: 61  LKDLERVQKKLSKLAHFDVLSRLPNRLQFELDLKREIARSKRYGRHLALLSIDLDFFKNV 120

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRK 201
           ND FGH VGD ++  ++ +L         V RLGG+EFA       + Q+A ++AN++ +
Sbjct: 121 NDRFGHDVGDGLLREVAKRLCSSLREEDCVARLGGDEFAVILTEINNPQQAKLVANNMIQ 180

Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +   +     G ++ I IS GIA      +   T+   AD ALY AK+ GRN    F+
Sbjct: 181 KM--GKPFHIKGHTVMIGISIGIAYFPDAGDEAITLRKNADIALYNAKECGRNNCQIFT 237


>gi|33600945|ref|NP_888505.1| hypothetical protein BB1960 [Bordetella bronchiseptica RB50]
 gi|33575380|emb|CAE32457.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 475

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 75/159 (47%), Gaps = 7/159 (4%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+ LLN           ++        LS++  DIDYFK IND  GH  GD V+  +
Sbjct: 296 RDTLTRLLNRKYLHVVLSKEVAYARKTGVPLSVLVADIDYFKSINDAHGHDAGDFVLQQV 355

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  +        +  RLGGEEF    + +   +A  +A  LR+ I+     +  G  + +
Sbjct: 356 ASLIASYSRGGDYTFRLGGEEFLVVLVDADGTQALNVAEALRRRIQEKATVLPDGGEVRL 415

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           T+S G+A          ++ RADQALY AK  GRNR V 
Sbjct: 416 TLSIGVAAHDRHPDYQRLLKRADQALYAAKSGGRNRCVL 454


>gi|22299402|ref|NP_682649.1| hypothetical protein tll1859 [Thermosynechococcus elongatus BP-1]
 gi|22295585|dbj|BAC09411.1| tll1859 [Thermosynechococcus elongatus BP-1]
          Length = 712

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 21/236 (8%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG---------SILKELFISY 97
           N+ L   G TP +  E+ +          +   L+L  + G         + L E  +  
Sbjct: 216 NLMLHIRGQTPHFHQEFRIQHRNGAYRWVLARGLVLRDVHGNATRVAGSLTDLTEHRLGE 275

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE--------KLSIVFFDIDYFKQINDNFGHP 149
            ++      D L+GL N +     +             KL+I+F DID FK IND+ GH 
Sbjct: 276 AQLLHDGLHDWLTGLANRTLLFDRIEQAARHGRRRPDYKLAILFIDIDRFKVINDSLGHS 335

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQI 208
            GD ++  L+++L  +      V R+GG+EF       S+  +A  + + +    E  + 
Sbjct: 336 SGDLILIELANRLTRIVRADDTVARIGGDEFVILLDDISDNNDALAVCDRIHS--ELDKP 393

Query: 209 NISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            + +   I + +S G+A R  H E     +  AD A+Y AK +G NR   FS+  +
Sbjct: 394 FVVNDQPIALRVSIGVALRSAHIEKAENYLRNADIAMYRAKLAGGNRYQVFSEDMH 449


>gi|239908299|ref|YP_002955040.1| putative signaling protein [Desulfovibrio magneticus RS-1]
 gi|239798165|dbj|BAH77154.1| putative signaling protein [Desulfovibrio magneticus RS-1]
          Length = 853

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 61/182 (33%), Positives = 92/182 (50%), Gaps = 9/182 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFD 135
            +I  + + E       +  L+  D L+G+ N   F+        S   YN + S+  FD
Sbjct: 648 AFIMITDISEQKNLEFNLLMLATKDGLTGVSNRHHFMEISGALLSSATRYNTEFSVAIFD 707

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID FK +ND +GH  GD V+  +       F +   +GRLGGEEFA +   +S + AA  
Sbjct: 708 IDNFKTVNDTWGHSAGDMVLKKICTLATTEFRSSDIIGRLGGEEFAISMPETSLENAAAA 767

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
               R I+E++       P I+ITIS+G+A    H + I +++  AD  LY AK+ GRN+
Sbjct: 768 VERFRTIVESTIFEYDEIP-INITISSGVAACSKHIKTIDSLLKSADNFLYKAKRHGRNQ 826

Query: 255 VV 256
            V
Sbjct: 827 TV 828


>gi|257057201|ref|YP_003135033.1| diguanylate cyclase (GGDEF) domain-containing protein
           [Saccharomonospora viridis DSM 43017]
 gi|256587073|gb|ACU98206.1| diguanylate cyclase (GGDEF) domain-containing protein
           [Saccharomonospora viridis DSM 43017]
          Length = 628

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 9/171 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-----EKLSIVFFDIDYFKQINDN 145
           + L   +  I+Q +  D L+GL N      SL +       E LS+   D+D FK +ND 
Sbjct: 421 ERLSAEHGAITQQAMQDPLTGLPNRRMLDESLRALAAADSAEPLSVALVDLDGFKDVNDQ 480

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           + H  GD V+  ++  L         V R GG+EF     G+    A          + +
Sbjct: 481 YSHAEGDAVLRVVASTLRDALRCDDIVARYGGDEFVILLPGAPMHAATQALTRAVNSVAS 540

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              ++S G    +T+S G+     +E    ++ RAD A+Y AK+ G NR+ 
Sbjct: 541 LPQHLSRG----VTLSVGLVCLRAQESAEEVLSRADAAMYQAKRRGGNRIA 587


>gi|194365389|ref|YP_002027999.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Stenotrophomonas maltophilia R551-3]
 gi|194348193|gb|ACF51316.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Stenotrophomonas maltophilia R551-3]
          Length = 946

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 12/185 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK-LSIVFFDIDYFKQIN 143
           E   +  R++  +  D L+GL N    +  L               +++F D+D FK +N
Sbjct: 516 ERLRAEQRLTHQAMHDALTGLPNRLHLLDRLQDALALARREGGPVFAVLFLDLDRFKLVN 575

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKI 202
           D+ GH  GD+++  ++ ++V + GT   V RLGG+EFA          +A      L   
Sbjct: 576 DSIGHAAGDRMLVEVAKRIVSMAGTDDVVARLGGDEFAVLLQCPQGLAQALDFGQRLLLA 635

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           ++ S     +G  +  + S GIA    +      ++  AD A+Y AK  G +R   F + 
Sbjct: 636 LQESM--WIAGRELFPSGSLGIALWNPRYRTGEELLRDADAAMYRAKAQGHDRCAIFDED 693

Query: 262 ENNTC 266
                
Sbjct: 694 MREQA 698


>gi|126641740|ref|YP_001084724.1| putative two-component response regulator [Acinetobacter baumannii
           ATCC 17978]
 gi|169796029|ref|YP_001713822.1| hypothetical protein ABAYE1952 [Acinetobacter baumannii AYE]
 gi|184158051|ref|YP_001846390.1| GGDEF domain-containing protein [Acinetobacter baumannii ACICU]
 gi|213157237|ref|YP_002319282.1| GGDEF domain protein [Acinetobacter baumannii AB0057]
 gi|215483486|ref|YP_002325703.1| WspR [Acinetobacter baumannii AB307-0294]
 gi|239501830|ref|ZP_04661140.1| WspR [Acinetobacter baumannii AB900]
 gi|260555078|ref|ZP_05827299.1| WspR [Acinetobacter baumannii ATCC 19606]
 gi|301346166|ref|ZP_07226907.1| WspR [Acinetobacter baumannii AB056]
 gi|301596744|ref|ZP_07241752.1| WspR [Acinetobacter baumannii AB059]
 gi|332851678|ref|ZP_08433603.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332865947|ref|ZP_08436727.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
 gi|332874511|ref|ZP_08442414.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6014059]
 gi|126387624|gb|ABO12122.1| putative two-component response regulator [Acinetobacter baumannii
           ATCC 17978]
 gi|169148956|emb|CAM86831.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
 gi|183209645|gb|ACC57043.1| GGDEF domain protein [Acinetobacter baumannii ACICU]
 gi|213056397|gb|ACJ41299.1| GGDEF domain protein [Acinetobacter baumannii AB0057]
 gi|213987853|gb|ACJ58152.1| WspR [Acinetobacter baumannii AB307-0294]
 gi|260411620|gb|EEX04917.1| WspR [Acinetobacter baumannii ATCC 19606]
 gi|323517992|gb|ADX92373.1| GGDEF domain-containing protein [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332729685|gb|EGJ61020.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332734997|gb|EGJ66083.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
 gi|332737355|gb|EGJ68279.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6014059]
          Length = 409

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL     ++S LS+ D L+GL N      +L         +   L+I+  DID+FK  ND
Sbjct: 222 ELMQQAQQLSLLSQQDALTGLANRRYLDETLDNEWRRALRHETPLTIMMVDIDFFKPYND 281

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           + GH  GD+ +  ++  +  +   +   V R GGEEF      ++ Q+A I A  L   I
Sbjct: 282 SLGHLKGDQCLKDIATAISSIAARSGDLVARYGGEEFLLLFPMTNAQQAKIQAERLMNAI 341

Query: 204 ENSQINIS-SGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   I    S  S ++TIS G+A       + IS  + RAD ALY AK +GRN+   
Sbjct: 342 KKIAIVHPCSSVSPYVTISVGVATTIPRLNDSISAFVSRADHALYQAKTNGRNQYQI 398


>gi|77747899|ref|NP_638079.2| response regulator [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|77761150|ref|YP_242472.2| response regulator [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 494

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/200 (26%), Positives = 89/200 (44%), Gaps = 12/200 (6%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN 126
           + + + ++   + L +G      L+ +  +  R+S    +D L+G+ N  AF   L    
Sbjct: 292 QRIIIAVLGFVLLLAVGIWLDLQLRRMHRNEARLSSEVWVDALTGIANRRAFDHRLSEAL 351

Query: 127 E-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGE 178
           +        LS++  D+D+FK  ND +GH  GD  +  ++  +      +     R GGE
Sbjct: 352 QDAVHTQAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCARRSDDIAARYGGE 411

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKE---PIS 234
           EF      +    A  LA+ +R  +    +   + P S H+T+S G A     E      
Sbjct: 412 EFGMILPHTDVAGALRLADAIRTAVAELGLMHLTSPTSAHVTVSVGAATFEPGETPLTPD 471

Query: 235 TIIYRADQALYVAKKSGRNR 254
            I+  AD ALY AK+ GR+R
Sbjct: 472 AIVRDADGALYRAKQGGRDR 491


>gi|330939654|gb|EGH42958.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 557

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 18/192 (9%)

Query: 83  GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           G ISG++L    ++  +     +S  +  D L+GL+N S F   L               
Sbjct: 85  GVISGAVLVLHDMTQEQQYIADLSWQAAHDPLTGLVNRSEFERRLQRVLDEDCGQGRSHC 144

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F D+D FK +ND  GH  GD+++  L   L         + RLGG+EF    +    +
Sbjct: 145 LMFLDLDQFKLVNDTGGHAAGDELLRQLCRALPQGLRDGDTLARLGGDEFGVLLVDCPAE 204

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI---IYRADQALYVA 247
            A  +A  LR+ ++     +  G     T+S G+      +  +++   +  AD A Y+A
Sbjct: 205 TALDIAEALREAVQRLHF-MWKGRPFMATVSIGLVHL--GDTPASLEGSLSAADMACYMA 261

Query: 248 KKSGRNRVVCFS 259
           K+ GRNRV  +S
Sbjct: 262 KERGRNRVQAYS 273


>gi|331652852|ref|ZP_08353857.1| diguanylate cyclase YddV (DGC) [Escherichia coli M718]
 gi|331048950|gb|EGI21022.1| diguanylate cyclase YddV (DGC) [Escherichia coli M718]
          Length = 460

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 281 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 339 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 399 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 456


>gi|326317515|ref|YP_004235187.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374351|gb|ADX46620.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 712

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 78/183 (42%), Gaps = 11/183 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           +  S + ++      +  ++  D L+GL N       L           + L++ + D+D
Sbjct: 516 VVISDISQIKAHEQELQHIALYDSLTGLPNRRLLADRLVQGIAQAQRRRQLLAVCYLDLD 575

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA 196
            FK++ND  GH  GD+++  +  ++         + RLGG+E      G  +  +   L 
Sbjct: 576 GFKRVNDQHGHAAGDQLLIEVGRRIQSQLRAEDTLARLGGDEMVVLINGLQTPGDCRPLI 635

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
           + +   +    + +  G    ++ S G++      +    ++ +AD A+Y AK+ G+N  
Sbjct: 636 DRILHAVRQ-PVPLPKGQGF-VSASMGLSFYPLDGDTPDLLLRQADHAMYEAKQDGKNHC 693

Query: 256 VCF 258
             F
Sbjct: 694 RRF 696


>gi|260463925|ref|ZP_05812121.1| response regulator receiver modulated diguanylate cyclase
           [Mesorhizobium opportunistum WSM2075]
 gi|259030300|gb|EEW31580.1| response regulator receiver modulated diguanylate cyclase
           [Mesorhizobium opportunistum WSM2075]
          Length = 457

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 9/175 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           +L  S  +  +++  D L+GL N     S L        +    LS++  D+D FK IND
Sbjct: 280 QLRASVTQTIEMAVTDGLTGLHNRRYLDSHLQTLFDRAVARRRPLSVMITDLDRFKAIND 339

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+V+   + +L           R GGEEF      +    A  +A  +R  I 
Sbjct: 340 THGHDGGDEVLREFARRLRKNVRGIDLACRFGGEEFVVVMPDTDGAVAEKVAERIRAEIA 399

Query: 205 NSQINI-SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
               +I + G +I +T+S G++      + ++ ++ RAD ALY AK  GRNRVV 
Sbjct: 400 QQPFSIGADGKTIEVTVSVGVSSVLKGVDTVAALMKRADLALYEAKSGGRNRVVA 454


>gi|88704261|ref|ZP_01101975.1| GGDEF domain protein [Congregibacter litoralis KT71]
 gi|88701312|gb|EAQ98417.1| GGDEF domain protein [Congregibacter litoralis KT71]
          Length = 447

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 8/173 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           ++L    NR  +    D L+G+ +  A+             Y E   +V  DID+FK++N
Sbjct: 273 EQLQEKLNRNREKLMRDTLTGVHSRLAYDEMMAQEMSRFRRYKETFCLVMLDIDFFKRVN 332

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGH  GDK +  ++  +        ++ R+GGEEF      +    A+ L   +R  +
Sbjct: 333 DTFGHAAGDKALQSVASIVGDRIRETDYLFRVGGEEFVLLLPRTEVSAASPLVEVIRVAV 392

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             S  +  + P + IT+SAG+      +   T+  RAD A+Y AKK+GRNR+V
Sbjct: 393 GESGFHYENQP-VTITLSAGLTAVRDDDTPETLFARADDAMYRAKKAGRNRLV 444


>gi|332702253|ref|ZP_08422341.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552402|gb|EGJ49446.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 554

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 85/178 (47%), Gaps = 9/178 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQI 142
           ++     Y  +  +   D L+ LLNH++         S       +L+    D+D+FK +
Sbjct: 374 IQSRVRRYRVLRSMLTRDSLTNLLNHTSLKIRLESECSRARRIGARLAFAMIDLDHFKNV 433

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRK 201
           ND +GH VGDKV+  L+  L         VGR GGEEFA   L   +++ AA L + +R 
Sbjct: 434 NDTYGHLVGDKVLKILAKVLKQRLRVSDVVGRYGGEEFAVILLDIDDRDHAAELLDRIRA 493

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              +     + G +  +T S GIA         T+   AD+ALY  K+ GRNRVV  S
Sbjct: 494 AFADMD-QSADGATFRVTFSCGIATFPEFPDAHTLADAADRALYEGKRLGRNRVVLAS 550


>gi|157373347|ref|YP_001471947.1| GGDEF domain-containing protein [Shewanella sediminis HAW-EB3]
 gi|157315721|gb|ABV34819.1| GGDEF domain [Shewanella sediminis HAW-EB3]
          Length = 396

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 73/285 (25%), Positives = 123/285 (43%), Gaps = 37/285 (12%)

Query: 4   SLKDFLSIWLCH-------------EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL 50
           SL    SI+LC              +  + + SP +    F     +++  ++ +     
Sbjct: 116 SLVRVFSIFLCFGMAYGWLWGIEHFQAEITAKSPLSLSFQFQAALPLYLCGLLVLTRTLW 175

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL-KELFISYNRISQLSRIDCL 109
               +     + +++     L    + +S+LL  ++   L   L  SY     L+  D L
Sbjct: 176 QANLVNTSILITFVIWVLYDLTPGQLPLSVLLSALAVIFLFTILIDSY----FLAYRDEL 231

Query: 110 SGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
           +GL +  A  + + S   K S+   DID+FK+ ND +GH VGD+V+  ++ ++  V G  
Sbjct: 232 TGLASRRALYNLVLSLGRKYSVAMLDIDHFKKFNDTYGHDVGDQVLKLVAAKMARVSGGG 291

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI------------------S 211
             V R GGEEF                 D+R+ IE  +I +                  S
Sbjct: 292 -KVFRYGGEEFTIVFPRKDTDSVIDHLEDVRESIEEYRIVLRDDKRKRSTKAKRNAANKS 350

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  ++ +TIS G+AER   E     + +AD+ALY AKK GRN++ 
Sbjct: 351 NKKTVSVTISIGVAERLGGETFDQTLKQADEALYRAKKKGRNQIC 395


>gi|94310628|ref|YP_583838.1| diguanylate cyclase [Cupriavidus metallidurans CH34]
 gi|93354480|gb|ABF08569.1| hypothetical protein Rmet_1688 [Cupriavidus metallidurans CH34]
          Length = 546

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 11/183 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + +     +  R+  L+  D L+GL N       L           + ++++F D+D FK
Sbjct: 359 TDITHRQQTVERLGHLATHDMLTGLPNRFLLDERLSQALARARRMPQPVALMFLDLDGFK 418

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDL 199
            +ND  GH VGD+++  +   L         V R+GG+EFA    G ++Q+   +LA  L
Sbjct: 419 AVNDTLGHGVGDELLILIGRDLQNAVRDSDTVARIGGDEFAIVLEGIADQDHLPMLARSL 478

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
            ++I +++        + +T S GI+           ++ +AD A+Y AK++G++     
Sbjct: 479 LRMIRSARQ--IGEHQVFVTSSIGISVYPTDALTPGELLKKADVAMYHAKRNGKDAFCLA 536

Query: 259 SDI 261
           S I
Sbjct: 537 SSI 539


>gi|89055410|ref|YP_510861.1| diguanylate cyclase/phosphodiesterase [Jannaschia sp. CCS1]
 gi|88864959|gb|ABD55836.1| diguanylate cyclase/phosphodiesterase [Jannaschia sp. CCS1]
          Length = 664

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 7/188 (3%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYN-EKLSIVFFDIDYF 139
            ++   + EL  + ++   L+R D L+G  N S    F++ L      ++++++FDID F
Sbjct: 225 LVTAIDVSELKRARDQARYLARRDQLTGCYNRSHLTRFVAELADAQATQVTLLYFDIDRF 284

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQIND +GH +GD+V+  ++D+ + +      V RLGG+EF      +            
Sbjct: 285 KQINDTYGHVIGDRVLMAMADRAIQLTQDTDAVVRLGGDEFVVVLGATDAASRLERVERF 344

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
            K +  S     +  +++  +S G++     +  +   +  AD ALY+AK +GRNR V +
Sbjct: 345 FKAL--SAPTDFASITVNSRVSLGVSVFDPTQTDVDVALRHADIALYLAKNTGRNRYVVY 402

Query: 259 SDIENNTC 266
            D      
Sbjct: 403 DDQMGEEA 410


>gi|288923605|ref|ZP_06417714.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EUN1f]
 gi|288345042|gb|EFC79462.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EUN1f]
          Length = 557

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 77/175 (44%), Gaps = 6/175 (3%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPV 150
            F +   I   S  D L+GL N S  I  L       +  +VF D+D FK +ND  GH  
Sbjct: 384 RFATEREIRHRSTHDALTGLPNRSRLIDRLTRALEQHRTGVVFVDLDGFKTVNDTHGHQA 443

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQIN 209
           GD+++  ++ +L         V RL G+EFA       S      L   L   I  ++  
Sbjct: 444 GDQLLREIAHRLQAAVRPGDLVARLAGDEFAVLCERVESPAAVQRLGQRLLAAI--NEPV 501

Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + +  ++HI+ SAG+A  R        ++  +D A+Y AK+ G  R V      +
Sbjct: 502 VLAEATVHISASAGVAISRAELSDPDRLLNASDIAMYAAKRGGAGRCVVHESWMH 556


>gi|15801648|ref|NP_287665.1| hypothetical protein Z2219 [Escherichia coli O157:H7 EDL933]
 gi|15831349|ref|NP_310122.1| hypothetical protein ECs2095 [Escherichia coli O157:H7 str. Sakai]
 gi|145698262|ref|NP_416007.3| diguanylate cyclase; cold- and stationary phase-induced
           oxygen-dependent biofilm regulator; positively regulates
           csgBAC and pgaABCD [Escherichia coli str. K-12 substr.
           MG1655]
 gi|168748905|ref|ZP_02773927.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4113]
 gi|168756138|ref|ZP_02781145.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4401]
 gi|168761414|ref|ZP_02786421.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4501]
 gi|168768973|ref|ZP_02793980.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4486]
 gi|168774275|ref|ZP_02799282.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4196]
 gi|168781468|ref|ZP_02806475.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4076]
 gi|168788451|ref|ZP_02813458.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC869]
 gi|168799377|ref|ZP_02824384.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC508]
 gi|170081161|ref|YP_001730481.1| diguanylate cyclase [Escherichia coli str. K-12 substr. DH10B]
 gi|188493713|ref|ZP_03000983.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 53638]
 gi|195936982|ref|ZP_03082364.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4024]
 gi|208811026|ref|ZP_03252859.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4206]
 gi|208814781|ref|ZP_03255960.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4045]
 gi|208818469|ref|ZP_03258789.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4042]
 gi|209396130|ref|YP_002270491.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4115]
 gi|217329403|ref|ZP_03445483.1| diguanylate cyclase [Escherichia coli O157:H7 str. TW14588]
 gi|238900712|ref|YP_002926508.1| putative diguanylate cyclase [Escherichia coli BW2952]
 gi|254793036|ref|YP_003077873.1| putative diguanylate cyclase [Escherichia coli O157:H7 str.
           TW14359]
 gi|256022830|ref|ZP_05436695.1| predicted diguanylate cyclase [Escherichia sp. 4_1_40B]
 gi|261224548|ref|ZP_05938829.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261257117|ref|ZP_05949650.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291282592|ref|YP_003499410.1| Diguanylate cyclase yddV [Escherichia coli O55:H7 str. CB9615]
 gi|293414842|ref|ZP_06657485.1| diguanylate cyclase yddV [Escherichia coli B185]
 gi|300950964|ref|ZP_07164840.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1]
 gi|300956093|ref|ZP_07168415.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1]
 gi|301018348|ref|ZP_07182854.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
 gi|301645180|ref|ZP_07245136.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|307138140|ref|ZP_07497496.1| diguanylate cyclase [Escherichia coli H736]
 gi|331642073|ref|ZP_08343208.1| diguanylate cyclase YddV (DGC) [Escherichia coli H736]
 gi|92087009|sp|P0AA89|DOSC_ECOLI RecName: Full=Diguanylate cyclase DosC; Short=DGC
 gi|93140421|sp|P0AA90|YDDV_ECO57 RecName: Full=Diguanylate cyclase yddV; Short=DGC
 gi|12515187|gb|AAG56278.1|AE005356_4 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13361561|dbj|BAB35518.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|145693134|gb|AAC74563.3| diguanylate cyclase; cold- and stationary phase-induced
           oxygen-dependent biofilm regulator; positively regulates
           csgBAC and pgaABCD [Escherichia coli str. K-12 substr.
           MG1655]
 gi|169888996|gb|ACB02703.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|187770056|gb|EDU33900.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4196]
 gi|188016729|gb|EDU54851.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4113]
 gi|188488912|gb|EDU64015.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 53638]
 gi|189000809|gb|EDU69795.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4076]
 gi|189356678|gb|EDU75097.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4401]
 gi|189361865|gb|EDU80284.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4486]
 gi|189368142|gb|EDU86558.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4501]
 gi|189371739|gb|EDU90155.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC869]
 gi|189378163|gb|EDU96579.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC508]
 gi|208724532|gb|EDZ74240.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4206]
 gi|208731429|gb|EDZ80117.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4045]
 gi|208738592|gb|EDZ86274.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4042]
 gi|209157530|gb|ACI34963.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4115]
 gi|209770568|gb|ACI83596.1| hypothetical protein ECs2095 [Escherichia coli]
 gi|209770570|gb|ACI83597.1| hypothetical protein ECs2095 [Escherichia coli]
 gi|209770572|gb|ACI83598.1| hypothetical protein ECs2095 [Escherichia coli]
 gi|209770574|gb|ACI83599.1| hypothetical protein ECs2095 [Escherichia coli]
 gi|209770576|gb|ACI83600.1| hypothetical protein ECs2095 [Escherichia coli]
 gi|217317842|gb|EEC26270.1| diguanylate cyclase [Escherichia coli O157:H7 str. TW14588]
 gi|238862231|gb|ACR64229.1| predicted diguanylate cyclase [Escherichia coli BW2952]
 gi|254592436|gb|ACT71797.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str.
           TW14359]
 gi|260449387|gb|ACX39809.1| diguanylate cyclase [Escherichia coli DH1]
 gi|290762465|gb|ADD56426.1| Diguanylate cyclase yddV [Escherichia coli O55:H7 str. CB9615]
 gi|291432490|gb|EFF05469.1| diguanylate cyclase yddV [Escherichia coli B185]
 gi|299882541|gb|EFI90752.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
 gi|300317030|gb|EFJ66814.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1]
 gi|300449760|gb|EFK13380.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1]
 gi|301076540|gb|EFK91346.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|315136130|dbj|BAJ43289.1| diguanylate cyclase yddV [Escherichia coli DH1]
 gi|320190058|gb|EFW64709.1| Putative Heme-regulated two-component response regulator
           [Escherichia coli O157:H7 str. EC1212]
 gi|320636922|gb|EFX06787.1| diguanylate cyclase [Escherichia coli O157:H7 str. G5101]
 gi|320642277|gb|EFX11570.1| diguanylate cyclase [Escherichia coli O157:H- str. 493-89]
 gi|320647629|gb|EFX16386.1| diguanylate cyclase [Escherichia coli O157:H- str. H 2687]
 gi|320653261|gb|EFX21400.1| diguanylate cyclase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320658966|gb|EFX26592.1| diguanylate cyclase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320663802|gb|EFX31031.1| diguanylate cyclase [Escherichia coli O157:H7 str. LSU-61]
 gi|323942161|gb|EGB38335.1| GGDEF domain-containing protein [Escherichia coli E482]
 gi|326340639|gb|EGD64436.1| Putative Heme-regulated two-component response regulator
           [Escherichia coli O157:H7 str. 1044]
 gi|326340891|gb|EGD64684.1| Putative Heme-regulated two-component response regulator
           [Escherichia coli O157:H7 str. 1125]
 gi|331038871|gb|EGI11091.1| diguanylate cyclase YddV (DGC) [Escherichia coli H736]
 gi|332343158|gb|AEE56492.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 460

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 281 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 339 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 399 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 456


>gi|229182956|ref|ZP_04310189.1| Sensory box/GGDEF [Bacillus cereus BGSC 6E1]
 gi|228600580|gb|EEK58167.1| Sensory box/GGDEF [Bacillus cereus BGSC 6E1]
          Length = 569

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 88/175 (50%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++        +  +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQA-- 252

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 253 PFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 307


>gi|157691645|ref|YP_001486107.1| ABC transporter ATP-binding protein [Bacillus pumilus SAFR-032]
 gi|157680403|gb|ABV61547.1| ABC superfamily ATP binding cassette transporter, binding protein
           [Bacillus pumilus SAFR-032]
          Length = 361

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 109/242 (45%), Gaps = 22/242 (9%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           H   +  SI     IAT +FI  +      L   Y              +   I++L  +
Sbjct: 126 HVVKMLLSITIGNVIATSLFIMIVHETSFELHFTY-------------WMFSYIAVLFNF 172

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDI 136
                  + +   N     +  D L+G+LN   F   L             ++S+++ DI
Sbjct: 173 YVIEHQTKAYQLLNLYKFQAHYDFLTGVLNKRKFDEVLNDAFSMKFKHPTHQMSLIYLDI 232

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK IND +GH  GD V+  +  +L+    +  ++GR+GGEEFA      + ++   +A
Sbjct: 233 DYFKSINDQYGHHEGDMVLKEIGKRLIKNTRSSDYIGRIGGEEFAVFLPNCTVEKTWQIA 292

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             LR+ I +  + + +G SIHIT+S G A        I  +   ADQ LY AK+SGRN+V
Sbjct: 293 ERLRRKIADQPVYLQNGMSIHITVSLGCAYYSGTSPDIKQLPIIADQELYKAKQSGRNQV 352

Query: 256 VC 257
             
Sbjct: 353 SF 354


>gi|312973827|ref|ZP_07787999.1| cellulose synthesis regulatory domain protein [Escherichia coli
           1827-70]
 gi|310332422|gb|EFP99657.1| cellulose synthesis regulatory domain protein [Escherichia coli
           1827-70]
          Length = 186

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 10/185 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           +   ++  +++  + +   +  D L+ L N  A             ++    S++  D+D
Sbjct: 1   MIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPFSVIQVDLD 60

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK IND FGH  GD+V++  +  +          GR+GGEEF     G+S  EAA +A 
Sbjct: 61  HFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASLTEAAEVAE 120

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRV 255
            +R  +   ++ I+   +I I+ S G++            +   AD+ LY+AK++GRNRV
Sbjct: 121 RIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRV 180

Query: 256 VCFSD 260
              SD
Sbjct: 181 -FASD 184


>gi|262403998|ref|ZP_06080553.1| GGDEF family protein [Vibrio sp. RC586]
 gi|262349030|gb|EEY98168.1| GGDEF family protein [Vibrio sp. RC586]
          Length = 526

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 14/222 (6%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE-------LFISYNRISQLS 104
           Y  L P    +  ++  +SL    + ISLLL YI+  +++E       L      +  L 
Sbjct: 293 YCLLEPLTQNDKWILFGMSL--GGVVISLLLSYITRLLIEERVRLEVMLDERTAELRYLV 350

Query: 105 RIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
             D L+ + N   F   L S    ++  ++V FDID+FKQIND++GH VGD+ +  + + 
Sbjct: 351 EHDSLTSIYNRRYFNQLLPSMLDASQPFTLVIFDIDHFKQINDSYGHLVGDQALVHVVNL 410

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           ++          R+GG+EFA  +        +     +R  +E + + +    S+ +T+S
Sbjct: 411 VMQKLKPEDHFVRMGGDEFAILSYVVDGDALSRYLEAIRVKVEQTPL-LVKTESVGLTVS 469

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            G A   H      +++ AD  LY++K  GRN+V       N
Sbjct: 470 IG-ASPNHGMSEFELLHCADTQLYLSKSLGRNQVSIAQQCSN 510


>gi|256258771|ref|ZP_05464307.1| PAS-associated C-terminal domain protein [Brucella abortus bv. 9
           str. C68]
 gi|260885095|ref|ZP_05896709.1| diguanylate cyclase/phosphodiesterase [Brucella abortus bv. 9 str.
           C68]
 gi|297247604|ref|ZP_06931322.1| PAS domain-containing protein [Brucella abortus bv. 5 str. B3196]
 gi|260874623|gb|EEX81692.1| diguanylate cyclase/phosphodiesterase [Brucella abortus bv. 9 str.
           C68]
 gi|297174773|gb|EFH34120.1| PAS domain-containing protein [Brucella abortus bv. 5 str. B3196]
          Length = 703

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFF 134
           L+G +    + E      R+  ++  D L+GL N + F   +GS  +        ++ + 
Sbjct: 249 LIGLV--EDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHVGSLLKKGSDCDPFALFYL 306

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK +ND+  H  GD+++  ++ +L  +     F+ RLGG+EFA      +  + A+
Sbjct: 307 DIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGTLAQIAM 366

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
            A+ +    ++    +  G +  +T S GIA+   H +    ++  AD ALY +K  GR 
Sbjct: 367 FADRVLSAFQD--PFVLGGNAEFVTCSMGIAQAPLHGDNPDVLMRNADLALYASKSGGRR 424

Query: 254 RVVCFSD 260
               + D
Sbjct: 425 TFRFYQD 431


>gi|166712019|ref|ZP_02243226.1| GGDEF family protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 990

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 10/172 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L  +   +S  +  D L+GLLN +  +++L             L++V  D+D+FK +N
Sbjct: 800 RDLEAARAELSLKATHDELTGLLNRAGILAALREMLLHAARSERPLAVVLIDLDHFKLVN 859

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD V+A +  ++  +      +GR GGEE  A   G +      L    R I 
Sbjct: 860 DQHGHLAGDAVLAGVGRRMDTLVRGDDRIGRYGGEELLALLPGLNPGATHRLDALHRGIC 919

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  +       +H+T S G+A     E    ++ RAD ALY AK+ GRNR+
Sbjct: 920 GDYPV---DDGWLHLTCSIGVAWFQAGETQEQLLARADAALYRAKRGGRNRI 968


>gi|121593570|ref|YP_985466.1| diguanylate cyclase [Acidovorax sp. JS42]
 gi|120605650|gb|ABM41390.1| diguanylate cyclase [Acidovorax sp. JS42]
          Length = 507

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 81/175 (46%), Gaps = 8/175 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           +  L    +R S  +R D L+G LN   F       I+     +  L +   D+D FK I
Sbjct: 333 IDHLRQELDRASAQARHDPLTGSLNRKGFAEAMEREIARARRQDAPLCVALLDVDNFKSI 392

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD  +  L+     V      + R GGEEF      +   E       L++ 
Sbjct: 393 NDRLGHTAGDAALVHLAQVTREVMRPQDQLARYGGEEFVIILPDTELAEGVKAMERLQRE 452

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  ++  +     + IT SAG+A+   +E  +  I RADQ +Y+AK++G+NRVV 
Sbjct: 453 L-TTRYFLKDQERVLITFSAGVAQVEGEEGSADAIRRADQGMYLAKRTGKNRVVA 506


>gi|83312193|ref|YP_422457.1| hypothetical protein amb3094 [Magnetospirillum magneticum AMB-1]
 gi|82947034|dbj|BAE51898.1| Hypothetical protein ydeH [Magnetospirillum magneticum AMB-1]
          Length = 301

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 11/190 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129
            +SL+L + + +      +  +    L+ +D L+GL N    +S L           +  
Sbjct: 116 MMSLVLAFSTAA----QGLERDAWRTLATVDALTGLGNRQTMMSHLIGERDRAMRQKQPC 171

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            +   DID FK++ND FGH  GD+V+  +++ L         + R GGEEF      ++ 
Sbjct: 172 CVALVDIDLFKKVNDTFGHTEGDRVLRAVAESLRRNVRPYDVLYRYGGEEFLICLPAATP 231

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           +    +   +R  I    I  ++G  I IT + G+AE      +   + RAD ALY  K+
Sbjct: 232 EAGRQVLERMRSAIAALGITSATGKPIPITATFGLAELSADLSVEESLDRADTALYDGKR 291

Query: 250 SGRNRVVCFS 259
           +GRNRV  +S
Sbjct: 292 AGRNRVAVWS 301


>gi|322434504|ref|YP_004216716.1| diguanylate cyclase/phosphodiesterase [Acidobacterium sp. MP5ACTX9]
 gi|321162231|gb|ADW67936.1| diguanylate cyclase/phosphodiesterase [Acidobacterium sp. MP5ACTX9]
          Length = 790

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 68/261 (26%), Positives = 124/261 (47%), Gaps = 32/261 (12%)

Query: 29  IYFSIFFSIF-IATVIFIANIFLFYIGLTPFYGLEYILVENLS---LVIISITISL---- 80
           I++S+  +IF +   + ++        L P+      L++ +S   L I+S+  +     
Sbjct: 262 IFWSLPITIFCVLAGMRLSGAERSVRRLRPWARSVARLMQGVSALGLAIVSVGAAAAVMG 321

Query: 81  ---LLGYIS----------GSILKEL--FISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
              +LGY+S           ++++EL  F + +++      D L+GL N + F   +GS+
Sbjct: 322 RHPVLGYMSLVGGFGLFALRTVVRELQSFKANDQLRDAVLRDHLTGLGNRALFREHVGSF 381

Query: 126 NEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
             KL       +++F D+D FK +ND  GH VGD+++   + +L         V RLGG+
Sbjct: 382 VTKLVRPEMKVALMFVDLDRFKAVNDELGHGVGDRLLIETAGRLERASRKEDLVCRLGGD 441

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EF  A + + E  A   A DL   I   +     G  + +T S G+      + + +++ 
Sbjct: 442 EFVVAMVIAGEAMARNRAEDLLDAIR--EPFAVDGRVLKMTASIGVVLGDATDDVESLLR 499

Query: 239 RADQALYVAKKSGRNRVVCFS 259
           +AD A+Y AKK G+++   F 
Sbjct: 500 KADGAMYSAKKLGKDQAQVFD 520


>gi|298504666|gb|ADI83389.1| sensor diguanylate cyclase/phosphodiesterase, PAS domain-containing
           [Geobacter sulfurreducens KN400]
          Length = 739

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 85/196 (43%), Gaps = 13/196 (6%)

Query: 82  LGYISGSIL--KELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIV 132
           +G I G+IL   E   +   I QL+  D L+GL N        S  +S          ++
Sbjct: 275 IGGIVGTILDITERKRAEEAIQQLAYFDALTGLPNRTLLRDRVSQLLSQARREGGGFGVL 334

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D FK +ND+ GH  GD +++ ++ ++         V RLG +EF     G   +E 
Sbjct: 335 HLDVDRFKGVNDSLGHACGDVLLSTVAGRIASSIRESDTVARLGSDEFVVILPGVGHEE- 393

Query: 193 AILANDLRKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
             +   +RKI+E     I   G  I  T S GIA           ++  AD A++ AK+ 
Sbjct: 394 -DVVAVVRKIVEELNRPIVIQGNDIFCTASIGIAIYPTDGSSADILLKNADMAMHKAKEF 452

Query: 251 GRNRVVCFSDIENNTC 266
           G +    +S   N+  
Sbjct: 453 GGDGYQFYSSELNHRA 468


>gi|251791755|ref|YP_003006476.1| PAS/PAC and GAF sensors-containing diguanylate cyclase [Dickeya
           zeae Ech1591]
 gi|247540376|gb|ACT08997.1| diguanylate cyclase with PAS/PAC and GAF sensors [Dickeya zeae
           Ech1591]
          Length = 771

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 107/230 (46%), Gaps = 14/230 (6%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           F+   I+  N  +  IGL   +   Y   +   L     T+  L   +     +E   + 
Sbjct: 545 FMGLPIYFRNEVVGMIGLGNRFD-GYNEQQLRFLNPFVDTLGSLFYALETQRAREELEA- 602

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS----YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            ++ +++  D L+G+ N  A+I         + +  ++   DID+FK++ND +GH VGD 
Sbjct: 603 -KLLEMANTDVLTGIHNRRAYILETEKCYRNHEKNTALAIIDIDFFKKVNDQYGHHVGDV 661

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            I  L++ +     T  FV RLGGEEF      ++      + N +R  +EN+   +  G
Sbjct: 662 AICRLAEIITSKLRTDDFVARLGGEEFGLIVHNANLDNVDAIMNGIRTEVENTLFTV-DG 720

Query: 214 PSIHITISAGIAERCH------KEPISTIIYRADQALYVAKKSGRNRVVC 257
            S H T+S G     H      K+   + + RAD ALY AK +GRNRVV 
Sbjct: 721 YSFHFTVSIGATFIKHRNIQSLKDNFESDMKRADDALYEAKNAGRNRVVW 770


>gi|109900516|ref|YP_663771.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109702797|gb|ABG42717.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
          Length = 631

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 89/178 (50%), Gaps = 11/178 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQI 142
           L+EL      + + + +D L+G+ N   F                +L +   DID+FK++
Sbjct: 448 LRELSEINRELEEKNTLDALTGIRNRRYFDKKYLAEVRRSRRERTELVVAMIDIDHFKRV 507

Query: 143 NDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND  GH VGD+ I F++++L          V R GGEEF+     +  + A  L   LR 
Sbjct: 508 NDEHGHLVGDECIKFVAERLKKALKRPSDDVCRYGGEEFSVILPSTDIKGAQDLLEQLRL 567

Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I+++ +  S+G  +++T+S G+A      ++    +I  ADQ LY AK +GRN +V 
Sbjct: 568 DIQDTPV-YSAGVVVNLTVSIGLASAIMDPQQSEDVLIGFADQLLYQAKNNGRNCIVA 624


>gi|332529366|ref|ZP_08405327.1| hypothetical protein HGR_05631 [Hylemonella gracilis ATCC 19624]
 gi|332041164|gb|EGI77529.1| hypothetical protein HGR_05631 [Hylemonella gracilis ATCC 19624]
          Length = 811

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 12/182 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---------LSIVFFDIDYF 139
            +  L    +R++ ++  D L+GL N       L     +           ++F D+D F
Sbjct: 368 DISALRSVESRLTHVALHDALTGLGNRHQLDICLRHNIARAASRVDDGGFGLLFIDLDGF 427

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K IND+ GH VGD+++  ++ +            R+GG+EF        S ++A  L   
Sbjct: 428 KNINDSLGHSVGDEMLVEIARRFRTTLRQNDVAVRMGGDEFLILLDQLRSTEDAMALCRK 487

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L  +I    I  S G ++  T S GIA    H +    ++  AD A+Y AK +GRNR   
Sbjct: 488 LLALISE-PIRTSVGQTVSTTASIGIALFPEHADSADELVKAADTAMYAAKAAGRNRGAV 546

Query: 258 FS 259
           FS
Sbjct: 547 FS 548


>gi|316931621|ref|YP_004106603.1| PAS/PAC sensor -containing diguanylate cyclase/phosphodiesterase
           [Rhodopseudomonas palustris DX-1]
 gi|315599335|gb|ADU41870.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris DX-1]
          Length = 745

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
            ++   + E   +  R++ ++  D L+GL N ++    L           EK++++F  I
Sbjct: 286 LLALMDITERKRAEMRLAFMAHHDGLTGLPNRNSLRKRLDDLLIQTRRTGEKIAVLFLGI 345

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAIL 195
           D FK +ND  GH VGDK++  ++ +L         + RL  +EFA    G    ++  +L
Sbjct: 346 DNFKAVNDTLGHAVGDKLLRGVARRLRSTLREEDPLARLNSDEFAVIQTGIKRPEDIVLL 405

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A  L   +   +  +  G S+ I  S GIA      +    ++  AD AL  AKK  R  
Sbjct: 406 AKRLLHAVA--EPYLLQGHSVVIGASIGIAVAPGDGDDSEKLLMNADMALSRAKKDTRGT 463

Query: 255 VVCFS 259
              F 
Sbjct: 464 FSFFE 468


>gi|89055622|ref|YP_511073.1| response regulator receiver modulated diguanylate cyclase
           [Jannaschia sp. CCS1]
 gi|88865171|gb|ABD56048.1| response regulator receiver modulated diguanylate cyclase
           [Jannaschia sp. CCS1]
          Length = 464

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 87/192 (45%), Gaps = 19/192 (9%)

Query: 81  LLGYISGSILKELFISYNRIS-------QLSRIDCLSGLLNHSAFISSLGSYNEKL---- 129
           L   IS  +  +     +R+        + +  D L+GL N    +  +     +     
Sbjct: 267 LAIRISAQL--DRKRQSDRMRAGVRASLEAAITDPLTGLYNRRFALHRMEQIMARPGGDP 324

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  D+DYFKQIND +GH  GD V+  ++ +L         V R+GGEEF     G+S 
Sbjct: 325 AVMMLDLDYFKQINDTYGHAAGDAVLQEVAIRLRGQVQANDLVARIGGEEFLVVLSGASA 384

Query: 190 QEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEP-----ISTIIYRADQA 243
           + A   A  LR  I     ++      + +T S G++     +P        +I++AD A
Sbjct: 385 RAATECAERLRACIGGMSFDLGGDTFPVRVTASVGLSLPGSSDPHTTSTPEALIHKADTA 444

Query: 244 LYVAKKSGRNRV 255
           LY AK  GR++V
Sbjct: 445 LYGAKAHGRDQV 456


>gi|88797784|ref|ZP_01113372.1| hypothetical protein MED297_11550 [Reinekea sp. MED297]
 gi|88779461|gb|EAR10648.1| hypothetical protein MED297_11550 [Reinekea sp. MED297]
          Length = 354

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/161 (31%), Positives = 87/161 (54%), Gaps = 11/161 (6%)

Query: 106 IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+G+ N    +  L           E L +V+ DID+FK+IND +GH +GD+V+  +
Sbjct: 189 TDALTGVWNRKGILHILEQKLNVSERTGETLGVVYADIDHFKRINDTYGHAIGDEVLVQV 248

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +D++ ++      +GR+GGEEF    L  +   A  +A  +R+ IE   +   +G  + +
Sbjct: 249 ADRIRLMLRNYDALGRIGGEEFLVLVLDPAPNAAQRIAERIRQAIEQRPVATRAG-DLMV 307

Query: 219 TISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVV 256
           ++S G+A R  ++     + ++  AD+ LY AK +GRN V 
Sbjct: 308 SMSLGVAVRHDEQQQATSTALMAEADRCLYQAKNAGRNCVH 348


>gi|330830774|ref|YP_004393726.1| GGDEF domain-containing protein [Aeromonas veronii B565]
 gi|328805910|gb|AEB51109.1| GGDEF domain protein [Aeromonas veronii B565]
          Length = 538

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 78/174 (44%), Gaps = 12/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           K L I  +++     +D L+ + N +A    L         Y   L +   DID+FK IN
Sbjct: 369 KRLTIQKHKL----FLDSLTQVHNRAALDERLEQEYKRWLRYRTPLCMAIIDIDHFKNIN 424

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           DN+GH  GDK +  ++  L        F+ R GGEEF       +  +       LR+ I
Sbjct: 425 DNYGHMAGDKALKVVAKALQSALRDTDFIARFGGEEFVVLLPNINPDKFQKPLETLRQTI 484

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++          + ITIS G       +  S +  RAD+ALY +K +GR++V  
Sbjct: 485 KSIPFRFRD-AKVEITISIGATLFKDGDNPSDVFERADKALYHSKHTGRDQVTL 537


>gi|308048315|ref|YP_003911881.1| diguanylate cyclase/phosphodiesterase [Ferrimonas balearica DSM
           9799]
 gi|307630505|gb|ADN74807.1| diguanylate cyclase/phosphodiesterase [Ferrimonas balearica DSM
           9799]
          Length = 822

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 91/178 (51%), Gaps = 11/178 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
           N + +++ +D L+GL N + F   L          +++++++F D+D FK++ND  GH +
Sbjct: 369 NELQRMAMMDALTGLPNRAMFHHELAKALGSIGRTDDQIALLFLDLDEFKRVNDTLGHDI 428

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+++  ++++L     +   V RLGG+EF     G   +    +   + +I  + Q  +
Sbjct: 429 GDELLKTVANRLQKSIRSMDTVCRLGGDEFTIIVRGLESEG--DIHRIIHQIFTSLQQPL 486

Query: 211 SSG-PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             G  ++ IT S G+    +       ++ RAD A+Y AK++GR+    F++    + 
Sbjct: 487 QLGRHTLIITTSIGVVFCDNPMMRPEELLKRADLAMYQAKQAGRSNYRVFNEQMLESA 544


>gi|297516107|ref|ZP_06934493.1| RNase II stability modulator [Escherichia coli OP50]
          Length = 644

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 202 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINHADNNKVGVVYLDLDNFK 261

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 262 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 320

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 321 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 378

Query: 259 SDIENN 264
           +   N 
Sbjct: 379 TPEMNQ 384


>gi|182418449|ref|ZP_02949743.1| ggdef domain protein [Clostridium butyricum 5521]
 gi|237666543|ref|ZP_04526528.1| diguanylate cyclase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377831|gb|EDT75375.1| ggdef domain protein [Clostridium butyricum 5521]
 gi|237657742|gb|EEP55297.1| diguanylate cyclase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 1758

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 11/169 (6%)

Query: 99   RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            +++  S +D L+ + N   F  SL          N + +++ FDID FK +ND +GH VG
Sbjct: 1415 KLTISSTLDKLTSVYNRKYFEESLVYLLEKSSFNNSEFAVIMFDIDDFKGVNDKYGHQVG 1474

Query: 152  DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            D+V+  L+ ++    G    +GR GGEEF        + +A  +A  +R  +E+++I   
Sbjct: 1475 DEVLIKLTKEVKRSIGRSDIIGRYGGEEFVVLLPSVDKLKAINMAEKIRNNVEDARI--- 1531

Query: 212  SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
             G    +TIS GIA   H+      I+ RADQALY+AK  G+NR V + 
Sbjct: 1532 LGDKRKVTISIGIAMSGHERINSEEIVNRADQALYMAKHEGKNRYVLWD 1580


>gi|315619588|gb|EFV00114.1| diguanylate cyclase domain protein [Escherichia coli 3431]
          Length = 453

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 274 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 331

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 332 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 391

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 392 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 449


>gi|117924782|ref|YP_865399.1| response regulator receiver modulated diguanylate cyclase
           [Magnetococcus sp. MC-1]
 gi|117608538|gb|ABK43993.1| response regulator receiver modulated diguanylate cyclase
           [Magnetococcus sp. MC-1]
          Length = 555

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 11/183 (6%)

Query: 86  SGSILKELFISYNR---ISQLSRIDCLSGLLNHS---AF----ISSLGSYNEKLSIVFFD 135
           + +++ E+ +   R   +  L   D L+GL NH+    F    I+S    N        D
Sbjct: 372 ADTLIAEVSMRAERMRTLRSLMIRDSLTGLYNHTTTKHFLDSEIASASRRNSTTCFAMID 431

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +DYFK++ND +GH +GD+V+  LS  L         VGR GGEEFA        + A  +
Sbjct: 432 LDYFKKVNDTYGHAMGDQVLVALSRLLQQRVRQSDVVGRYGGEEFAVVLTDIDLERAKAI 491

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + LR+     +   ++G     + S G+A     E    I   AD+ALY AK+ GRN+V
Sbjct: 492 LDQLREDFARVKF-FANGIEFTCSFSCGVAAFPRLETALEIGEAADKALYQAKREGRNQV 550

Query: 256 VCF 258
           V F
Sbjct: 551 VAF 553


>gi|330953521|gb|EGH53781.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 308

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 8/170 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y   +Q +  D L+   N  A    L         + + LS++  DID+FK++ND +GH 
Sbjct: 140 YRIATQTALRDPLTSTGNRIAMDQGLAREIEISRRHKQPLSLLMLDIDHFKKVNDEYGHH 199

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  L         V R GGEEF      +  + A ++   L + + N +  
Sbjct: 200 TGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGAESAELIGQRLCQAVRNLEFR 259

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               P++ +T+S G +     E   +++ RAD ALYVAK+ GRNR+   S
Sbjct: 260 -ELSPALTMTVSLGCSTLLPTETADSLLRRADNALYVAKREGRNRIAMAS 308


>gi|300313782|ref|YP_003777874.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gi|300076567|gb|ADJ65966.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 475

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 61/219 (27%), Positives = 96/219 (43%), Gaps = 11/219 (5%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            +F+   G   F     +L   L L+      S+ L       L+       ++ +L+R 
Sbjct: 254 TVFIGRTGARIFREWYNMLYAVLFLMASFCIASIYLIRRVRVELQRRSALDQQLEELART 313

Query: 107 DCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+ LLN  A   +L    ++         S++F D+D+FK  ND +GH  GD  +  +
Sbjct: 314 DKLTSLLNRRALDEALARAWKRAEENPDAIFSLLFVDVDFFKLYNDTYGHKAGDYALMAV 373

Query: 159 SDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           S  +V          GR GGEEF     G+    A  +A  +   I++ +I     P   
Sbjct: 374 SRCIVAAVSRLSDQSGRYGGEEFVVLLNGTDTVGATHVAKRIISAIQSLKIPHERSPFDI 433

Query: 218 ITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNR 254
           +T+S G+    R H   I  ++  AD ALY AK+ GRN+
Sbjct: 434 LTVSIGVTSLLREHHSSIEDVVKDADAALYRAKQDGRNK 472


>gi|262404021|ref|ZP_06080576.1| GGDEF family protein [Vibrio sp. RC586]
 gi|262349053|gb|EEY98191.1| GGDEF family protein [Vibrio sp. RC586]
          Length = 953

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 70/204 (34%), Positives = 102/204 (50%), Gaps = 20/204 (9%)

Query: 71  LVIISITISLLLGYISGSILKE-------------LFISYNRISQLSRIDCLSGLLNHSA 117
           L++I++++S+++  I     +E             L    ++  +LS+ D L+GL N  A
Sbjct: 740 LMVIALSVSVVMWRIRVMKRREKYLVEQVALQTQKLRFQADKFERLSKEDELTGLANRRA 799

Query: 118 FISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           F  SL        +  L I   DID+FKQIND + H +GD+VI  +S QL+   G    V
Sbjct: 800 FDMSLKQAFTQLPDLPLCIAVLDIDHFKQINDRYSHIIGDQVIVSVSQQLLKYVGDKTKV 859

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232
            R GGEEF     G  +QEA      LR +IE    +      + +T+S G A+    E 
Sbjct: 860 ARWGGEEFTVLYFG-PQQEAWGYFEQLRHVIEQVDFSTVDS-GLTVTVSIGFADSQQAEC 917

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
             T++  AD AL  AK+ GRNRVV
Sbjct: 918 YETVLKLADHALLTAKQLGRNRVV 941


>gi|261251157|ref|ZP_05943731.1| GGDEF family protein [Vibrio orientalis CIP 102891]
 gi|260938030|gb|EEX94018.1| GGDEF family protein [Vibrio orientalis CIP 102891]
          Length = 655

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 10/172 (5%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNF 146
                R+  L+  D L+GL N +     L          NE +++++ D+D FK +ND +
Sbjct: 483 LKEMERLEYLAHHDSLTGLANRAKLYRVLDETLTIERDTNEGVALLYLDLDGFKGVNDTY 542

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+V+  ++++L+ +F +   V RL G+EF      ++  + + +A +L  +I+  
Sbjct: 543 GHDAGDEVLKQVAERLLSMFTSHDLVARLSGDEFVVLVTKTTVTKISAIAEELIDVIQRD 602

Query: 207 QINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
            +    G  + +  S G+    +  E +   +  AD A+Y AK SG+ R V 
Sbjct: 603 IVY--RGRVLKVGASIGVHYSANLSENLDQWLKAADTAMYQAKSSGKGRYVI 652


>gi|254695003|ref|ZP_05156831.1| PAS-associated C-terminal domain protein [Brucella abortus bv. 3
           str. Tulya]
          Length = 703

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 90/188 (47%), Gaps = 11/188 (5%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVF 133
            L+G +    + E      R+  ++  D L+GL N + F   +GS  +        ++ +
Sbjct: 248 FLIGLV--EDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHVGSLLKKGSDCDPFALFY 305

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK +ND+  H  GD+++  ++ +L  +     F+ RLGG+EFA      +  + A
Sbjct: 306 LDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGTLAQIA 365

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
           + A+ +    ++    +  G +  +T S GIA+   H +    ++  AD ALY +K  GR
Sbjct: 366 MFADRVLSAFQD--PFVLGGNAEFVTCSMGIAQAPLHGDNPDVLMRNADLALYASKSGGR 423

Query: 253 NRVVCFSD 260
                + D
Sbjct: 424 RTFRFYQD 431


>gi|229089690|ref|ZP_04220951.1| Sensory box/GGDEF [Bacillus cereus Rock3-42]
 gi|228693589|gb|EEL47291.1| Sensory box/GGDEF [Bacillus cereus Rock3-42]
          Length = 569

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 88/175 (50%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++        +  +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQA-- 252

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 253 PFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 307


>gi|296285048|ref|ZP_06863046.1| sensory box/GGDEF family protein [Citromicrobium bathyomarinum
           JL354]
          Length = 881

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/184 (34%), Positives = 84/184 (45%), Gaps = 11/184 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           SG+ L E   S    S+L+  D L+GL N  A   +L              SI+  D+D 
Sbjct: 327 SGTDLTERRRSAEHASRLALYDSLTGLANRHALSQALSKLLTHRNPAQRVCSILMLDLDR 386

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK +ND FGHP GD ++  ++ +L  V G    VGR+GG+EF         +     L N
Sbjct: 387 FKHVNDTFGHPTGDALLNQVARRLEKVVGDLGTVGRIGGDEFQVLIPKRCEKARLEQLGN 446

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
           D+   +  SQ     G    I  S GIA    H      ++  AD ALY AK +GR R  
Sbjct: 447 DIIHSL--SQPYSIDGNRAVIGASVGIAIAPEHGGTSERLVRSADLALYAAKDAGRGRYR 504

Query: 257 CFSD 260
            FSD
Sbjct: 505 VFSD 508


>gi|261215348|ref|ZP_05929629.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella abortus bv. 3 str. Tulya]
 gi|260916955|gb|EEX83816.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella abortus bv. 3 str. Tulya]
          Length = 709

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 90/188 (47%), Gaps = 11/188 (5%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVF 133
            L+G +    + E      R+  ++  D L+GL N + F   +GS  +        ++ +
Sbjct: 254 FLIGLV--EDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHVGSLLKKGSDCDPFALFY 311

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK +ND+  H  GD+++  ++ +L  +     F+ RLGG+EFA      +  + A
Sbjct: 312 LDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGTLAQIA 371

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
           + A+ +    ++    +  G +  +T S GIA+   H +    ++  AD ALY +K  GR
Sbjct: 372 MFADRVLSAFQD--PFVLGGNAEFVTCSMGIAQAPLHGDNPDVLMRNADLALYASKSGGR 429

Query: 253 NRVVCFSD 260
                + D
Sbjct: 430 RTFRFYQD 437


>gi|224368649|ref|YP_002602811.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223691365|gb|ACN14648.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 338

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 10/188 (5%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           L L  +  +  KEL  +   +   +  D L+ + N   F   L             L+++
Sbjct: 149 LELEQVVENRTKELAEANRLLQIQTNTDSLTNIGNRRFFDQMLVQEWSRGQRGGTPLALI 208

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQE 191
             DID+FK+ ND +GH  GD  +  L+  L            R GGEEFA       +Q 
Sbjct: 209 MLDIDHFKRFNDRYGHLAGDACLQALAKALAESGRRAGELAARYGGEEFAILLPNMDKQI 268

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKK 249
               A  + + + +  I  +      +T+S G+A       +    ++ +AD ALY AK 
Sbjct: 269 VLETATQIHQRVLSLAIPHTDSLLGIVTVSIGVAILQPSNQLLPVELVRQADAALYRAKT 328

Query: 250 SGRNRVVC 257
           +GRN +  
Sbjct: 329 NGRNCIQL 336


>gi|221067494|ref|ZP_03543599.1| diguanylate cyclase [Comamonas testosteroni KF-1]
 gi|220712517|gb|EED67885.1| diguanylate cyclase [Comamonas testosteroni KF-1]
          Length = 632

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 87/181 (48%), Gaps = 5/181 (2%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDN 145
            +  L       + L+  D L+GL N  A   +L       + +++ F D+D FKQ+ND 
Sbjct: 451 DIDALKRGEQAANHLANHDALTGLANRRALEETLNQELADGQMVAVCFMDLDGFKQVNDT 510

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIE 204
            GH  GD+V+  ++ +L+       +V RLGG+EF     G    +EA  +     + + 
Sbjct: 511 QGHDAGDEVLRVVAARLLAQARAGDYVARLGGDEFVVLLSGLHMPKEAMSVMKRCMEAVR 570

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
              I +  G  + +  S GI+        + ++  AD+A+Y AK +G+ R+V  SD+  +
Sbjct: 571 Q-PIALQGGVMVQVGSSIGISISMEGSSTANLLQTADEAMYAAKHAGKGRIVQHSDLAQS 629

Query: 265 T 265
           +
Sbjct: 630 S 630


>gi|194015663|ref|ZP_03054279.1| putative diguanylate cyclase [Bacillus pumilus ATCC 7061]
 gi|194013067|gb|EDW22633.1| putative diguanylate cyclase [Bacillus pumilus ATCC 7061]
          Length = 529

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 86/174 (49%), Gaps = 6/174 (3%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFK 140
           I  S + E  +    + + + ID L+ + N S+FI      L    +  +++ FDID+FK
Sbjct: 341 IVISDVTEQRLLQEELERRAYIDGLTNIFNRSSFIERTQMILEEDAQDTAVMLFDIDFFK 400

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           QIND  GH +GD+ +  +              GR GGEEFA      S +EA  +A  +R
Sbjct: 401 QINDTHGHHIGDEALRHVVTICQQHLQMDDLFGRYGGEEFAICLPHHSFEEACHIAEQIR 460

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253
              E      +    + +T S GIA   +    + T+++ ADQALY++K+ GRN
Sbjct: 461 HSFE-MSFFENDEEKVRVTASFGIAHTVYDPNVLETLLFEADQALYMSKRQGRN 513


>gi|153010456|ref|YP_001371670.1| diguanylate cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC
           49188]
 gi|151562344|gb|ABS15841.1| diguanylate cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC
           49188]
          Length = 658

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 98/236 (41%), Gaps = 24/236 (10%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK----------ELF 94
           +  + L Y GL        +++  + LVI+ +  + LL    GS+ +          EL 
Sbjct: 162 VRQLHLIYTGLAA-----GLILCGVVLVILLLRHNKLLDRAHGSMQRLTSDLRQATGELQ 216

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147
               R+   +  D L+GL N   F   L          ++   I+  D+D FK +ND  G
Sbjct: 217 SQNFRLEHDAHHDALTGLPNRVLFRQDLEKRLEAAQTGSQSAIILLLDLDGFKDVNDTLG 276

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H VGD ++  ++ +L  +      V RLGG+EFA  + G  E+EA  LA+ L  +I  SQ
Sbjct: 277 HDVGDALLQAVARRLTKLGERGDMVCRLGGDEFAVLSTGLREEEALELADRLMDVI--SQ 334

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                   I I    G+A    +     +   AD ALY AK  G      F     
Sbjct: 335 PYHVGELEIKIGTCVGVAISEGEPDTEELFKHADLALYEAKALGPGHASVFKSQMQ 390


>gi|313500281|gb|ADR61647.1| Response regulator/GGDEF domain-containing protein [Pseudomonas
           putida BIRD-1]
          Length = 335

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  S   + +L   D L+GL N   F   L           ++LS++  D+DYFK  N
Sbjct: 157 QQLLDSNLMLQRLMNSDGLTGLSNRRHFDEYLELEWRRAMREQQQLSLLMIDVDYFKVYN 216

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D+FGH  GD+ +  +++ +            R GGEEFA     +S   A ++A  LR+ 
Sbjct: 217 DSFGHLAGDEALRQVAEAIRSSCSRPTDLPARYGGEEFALVLPNTSPGGARLVAEKLRQT 276

Query: 203 IENSQINISS-GPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255
           +    I  ++      +T+S G+A +          +I  AD+ LY+AK  GRN+V
Sbjct: 277 VLGLGIPHTAPTADTFLTVSIGLATQTPAIGSHCRQLISAADKGLYLAKNGGRNQV 332


>gi|322419658|ref|YP_004198881.1| PAS/PAC sensor-containing diguanylate cyclase [Geobacter sp. M18]
 gi|320126045|gb|ADW13605.1| diguanylate cyclase with PAS/PAC sensor [Geobacter sp. M18]
          Length = 300

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 8/171 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNF 146
            +    + +L+ +D L+ + N       L         Y+    I+F D+D FK +ND F
Sbjct: 130 EMRVRELEKLALLDGLTQIANRRYLDRELESRLEEMNRYDIPFGILFMDLDDFKTVNDRF 189

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+V+ F++  L          GR GGEEF       +      L   LR++ E S
Sbjct: 190 GHETGDRVLQFVAGTLSANSRPFDLYGRWGGEEFVGIIRNVNAANLKHLGQRLRRLAEKS 249

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +  G  + +TIS G      K+ + T++ RAD  +Y +K +G+NR+  
Sbjct: 250 -FVLVKGEKLRVTISIGATMAVKKDTVHTLLQRADSLMYQSKAAGKNRLTI 299


>gi|167035253|ref|YP_001670484.1| diguanylate cyclase [Pseudomonas putida GB-1]
 gi|166861741|gb|ABZ00149.1| diguanylate cyclase [Pseudomonas putida GB-1]
          Length = 360

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 116/266 (43%), Gaps = 14/266 (5%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFS----IFIATVIFIANIFLFYIGLTPFY 59
           SL         H   L S +  + M   ++       +F   +  +A + +  + L P  
Sbjct: 83  SLMGGFWTAAMHFNPLPSVTVLSMMTMNNVAAGGKRMVFRGVLAQLAGMLVALLLLGPGL 142

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF- 118
            L    ++  + + +     L LG++   +  +L     R+S LS  D L+GLLNH A+ 
Sbjct: 143 QLTATPLQVYACLPMLTLYPLALGWVCYQLAIKLGDHKRRLSALSLTDSLTGLLNHGAWK 202

Query: 119 ------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
                   +         I   DID+FK IND FGH VGD V+  LS +L          
Sbjct: 203 DLLLLKFQACKQQQGHAVIALIDIDHFKTINDTFGHVVGDCVLRQLSVELRRNLREGDQA 262

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-E 231
           GR GG+EF      +SE +A      LR+ + + +      P + I++S G++      E
Sbjct: 263 GRYGGDEFCVILPDTSEAQACHAMERLREQVSSYR--NPQLPHLRISLSIGLSPFEAGLE 320

Query: 232 PISTIIYRADQALYVAKKSGRNRVVC 257
                + +AD+ALY AK +GR++V  
Sbjct: 321 SPEHWLEQADKALYTAKHAGRDQVNF 346


>gi|113970235|ref|YP_734028.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113884919|gb|ABI38971.1| diguanylate cyclase [Shewanella sp. MR-4]
          Length = 937

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 11/177 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           +     +  R+  ++  D L+ L N +     L          +   +++F D+D FKQI
Sbjct: 762 ITRRIAAEKRLQHVASHDALTQLPNRALLDDRLSQALLAHRRDHSHFALLFIDLDNFKQI 821

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRK 201
           ND +GHPVGD ++  ++  L         V R GG+EF            A  +A+++  
Sbjct: 822 NDQYGHPVGDALLLQVAGLLTKAIRHSDTVARFGGDEFVILLNRVQDLDAATQVADNILH 881

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +  S      G ++ + IS G+       +    ++ +ADQ +Y AK +G      
Sbjct: 882 SL--SSPFSVEGVTVEVAISIGVVIYPRDGDTAIELMKKADQLMYQAKTAGGRCYRL 936


>gi|119773886|ref|YP_926626.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119766386|gb|ABL98956.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella amazonensis SB2B]
          Length = 312

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 9/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
           L    + + +L+ +D L+G+ N   F   L          ++ + ++  DIDYFKQ ND+
Sbjct: 134 LKRQSDLLRRLAFLDGLTGVKNRHFFDQYLETQLMLARRQSQAICVLMVDIDYFKQYNDS 193

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           FGH +GD+ +  ++  L      P   V R GGEEF      + +     +   ++  I 
Sbjct: 194 FGHQMGDEALRSVAQALGESCRRPADLVARYGGEEFVVVLPNTPKNGVERVIERIQGAIA 253

Query: 205 NSQINISSGPSIHITISA-GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              I+  +  +  +T+S  G+      +    ++  AD+ LY AK  GRNR   
Sbjct: 254 ELDIHHPASATGILTVSMGGMIWLADYQSTEALLGEADKLLYRAKSLGRNRACI 307


>gi|330888918|gb|EGH21579.1| GGDEF domain-containing protein [Pseudomonas syringae pv. mori str.
           301020]
          Length = 504

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 14/215 (6%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILK----ELFISYNRISQLSRIDCLS 110
             P++   +  +    ++I+++ +  +L Y     L     EL I+ N +  ++  D L+
Sbjct: 268 FAPWWAYAHRSMTITGIIILALVLLGVLLYRQIQQLINAEGELNIARNELEIIAHTDSLT 327

Query: 111 GLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL- 162
            L N   F ++L     +       ++I+  DID+FKQ ND +GH  GD  +  ++  + 
Sbjct: 328 HLANRRCFDAALQQEWGRASRNTATIAIILLDIDWFKQYNDTYGHLQGDDCLKQVAGLIG 387

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             +        R GGEEF      +    A  +A  +R  +E + I  S+ P   +TIS+
Sbjct: 388 NSLDRAGDIAARYGGEEFVILLPETDLAGALKIAEKIRSSVETNHIEHSASPLGKLTISS 447

Query: 223 GIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G+       K+  +  +  AD+ LY+AK  GRNRV
Sbjct: 448 GVVSINAAEKDGHTAALAEADRLLYLAKTKGRNRV 482


>gi|322508370|gb|ADX03824.1| GGDEF domain-containing protein [Acinetobacter baumannii 1656-2]
          Length = 401

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL     ++S LS+ D L+GL N      +L         +   L+I+  DID+FK  ND
Sbjct: 214 ELMQQAQQLSLLSQQDALTGLANRRYLDETLDNEWRRALRHETPLTIMMVDIDFFKPYND 273

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           + GH  GD+ +  ++  +  +   +   V R GGEEF      ++ Q+A I A  L   I
Sbjct: 274 SLGHLKGDQCLKDIATAISSIAARSGDLVARYGGEEFLLLFPMTNAQQAKIQAERLMNAI 333

Query: 204 ENSQINIS-SGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   I    S  S ++TIS G+A       + IS  + RAD ALY AK +GRN+   
Sbjct: 334 KKIAIVHPCSSVSPYVTISVGVATTIPRLNDSISAFVSRADHALYQAKTNGRNQYQI 390


>gi|288958523|ref|YP_003448864.1| GGDEF domain-containing protein [Azospirillum sp. B510]
 gi|288910831|dbj|BAI72320.1| GGDEF domain-containing protein [Azospirillum sp. B510]
          Length = 388

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 17/237 (7%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           +++  I  ++F+ ++  +A IF           L   L++ ++ V    +++ L+   +G
Sbjct: 150 VVFIGISITVFVTSLRIVAGIF---FPELLSGALNASLIQTVTYV---SSLANLILVSNG 203

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFK 140
            +L  +  S +R+  ++  D L+   N           ++ L      +S++  D+D+FK
Sbjct: 204 FLLMAVERSADRLRIIAMKDKLTDCWNRMRVEEVARHEMAVLERNGRPVSMILADLDHFK 263

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND  GH VGD+V+   +D       +   +GR GGEEF     G++  EA   A  LR
Sbjct: 264 SLNDLHGHWVGDEVLIGFADLARRSVRSIDLLGRWGGEEFIILLPGTTVAEAVSTAERLR 323

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +E+             T+S G+AE    +   T I  AD ALY AK +GRNR   
Sbjct: 324 IQLESHVFPGGQ----RATVSLGVAECRQGDSWETWIRNADTALYSAKATGRNRTCV 376


>gi|218530457|ref|YP_002421273.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium chloromethanicum CM4]
 gi|218522760|gb|ACK83345.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium chloromethanicum CM4]
          Length = 805

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 14/190 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDI 136
           +   + E   +  RI+ ++  D L+GL N + F + L     + +         ++  D+
Sbjct: 360 AAIDVTEQRRAEARITHMAHHDALTGLPNRALFTTCLAEVIAEHARTGAGAGAALLCLDL 419

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK +ND  GHP GD ++  ++D++         V RLGG+EFA           + +A
Sbjct: 420 DKFKLVNDTLGHPAGDTLLRAVADRITACLHGEDLVARLGGDEFAVLLRTPDAGTVSAVA 479

Query: 197 NDLRKIIENSQINISSG-PSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +   IE     +  G     I +S GIA    H     T++  AD ALY AK  G + 
Sbjct: 480 GRI---IEALSHPVRLGDRECQIGVSVGIACLPEHGTDSDTLLRHADLALYRAKADGGSI 536

Query: 255 VVCFSDIENN 264
             CF    ++
Sbjct: 537 AHCFEAAMDS 546


>gi|152980290|ref|YP_001353520.1| hypothetical protein mma_1830 [Janthinobacterium sp. Marseille]
 gi|151280367|gb|ABR88777.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 417

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 103/235 (43%), Gaps = 11/235 (4%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
           +F+   ++  A       I+   +   P   + +    N+ L++I       +   +  +
Sbjct: 173 WFAASLALIFAVCQLTRGIYFITLDQ-PSNTMMFDTFWNIVLMVIGAVTLPTMTMAAVML 231

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQI 142
             +  ++   +   +  D L+  L+     +         G +   LS++  D+D+FK+I
Sbjct: 232 THDAMLAN--LEDAANHDHLTEALSRKRLEAVAREQILRAGKFGRPLSLLIIDLDHFKRI 289

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD+V+   +            +GRLGGEEF      +    A  +A  LR+ 
Sbjct: 290 NDTYGHAGGDEVLREFARMTRASLRDGDALGRLGGEEFGILLPNTDTVGALAIARRLRED 349

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            E   I+ + G   H +IS GIA     E    +  RAD+ALY AK SGRNRV+ 
Sbjct: 350 SERHLISGTFG-ECHYSISIGIATWRDGENFDRLSIRADRALYTAKNSGRNRVLV 403


>gi|144899870|emb|CAM76734.1| PAS/PAC domain [Magnetospirillum gryphiswaldense MSR-1]
          Length = 639

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 90/204 (44%), Gaps = 12/204 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
              E LS+V I     ++  YI+  S +        R+ + +  D L+GL N + F+  L
Sbjct: 437 FYAEWLSIVAIKDDAGVVSHYIAIFSDITHRKEDEERVWRQANFDALTGLPNRALFVDRL 496

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                      +K ++ F D+D FKQ+ND+ GH  GD ++   + +LV    +   V RL
Sbjct: 497 SQAIRQSKRDGKKFALFFIDLDGFKQVNDSLGHAAGDLLLQQTAQRLVDCVRSSDTVARL 556

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPI 233
            G+EF     G     + +++A  + + +         G   H+  S GIA         
Sbjct: 557 AGDEFTCIVQGVHDSTDTSMVARKILERLAA--PFDLDGKPAHVQGSVGIALYPDDGADG 614

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
           + ++  AD+A+Y  K+ G+N    
Sbjct: 615 AELLKMADEAMYRVKRRGKNSFEF 638


>gi|116327587|ref|YP_797307.1| GGDEF domain-containing protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331802|ref|YP_801520.1| GGDEF domain-containing protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120331|gb|ABJ78374.1| GGDEF domain protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125491|gb|ABJ76762.1| GGDEF domain protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 323

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 22/192 (11%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
             +  EL ++ +++ + +  D L+ L N  AF   L             LS++  D+D+F
Sbjct: 125 SQLAAELKVANDKLFEQACTDPLTKLKNRRAFNEDLNRLIHLAQNQGTSLSLLMIDVDFF 184

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  NDNFGHP GDKV+  ++  L         + R GGEEF  A   +S+ ++  +   L
Sbjct: 185 KDYNDNFGHPAGDKVLIEIALLLTRALRKCDVLARYGGEEFIIALPDASQTDSVEITERL 244

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC----------HKEPISTIIYRADQALYVAKK 249
            + I        S     ITIS GI+             +   ++ +I  AD+ALY +K 
Sbjct: 245 IQTIREF-----SWEKRPITISIGISTLTFPLGGTLPIENNACLTNLIESADRALYASKT 299

Query: 250 SGRNRVVCFSDI 261
            GR+R   F++I
Sbjct: 300 EGRDRFTHFTEI 311


>gi|86360462|ref|YP_472350.1| hypothetical protein RHE_PE00188 [Rhizobium etli CFN 42]
 gi|86284564|gb|ABC93623.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 280

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 12/206 (5%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           +  +   + +N  ++ I+  I+ L   + G  +++     ++  + S  D L+G+ N   
Sbjct: 80  WLWMTEAVQKNGWMLCIASDITRL--KVHGRTVRQ---DRDQAIKASYTDELTGVANRRF 134

Query: 118 FISS------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
            ++          +     +  FDID FK+IND  GH  GD V+   + ++         
Sbjct: 135 VMARVEDMVEAARHGNSGCLAVFDIDNFKRINDRLGHHAGDLVLRDFAHRIHQNVRRNDC 194

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
            GR+GGEEF      +  ++A  +   +  +I  S+  +   P    T SAGIA     +
Sbjct: 195 FGRVGGEEFLLVMPATGPEDALAMVERMLTVIRFSR-PLPDSPDFSYTCSAGIAACVPTD 253

Query: 232 PISTIIYRADQALYVAKKSGRNRVVC 257
             S +  RADQALY AK SGR+RV  
Sbjct: 254 SASELYRRADQALYDAKMSGRDRVRA 279


>gi|325981986|ref|YP_004294388.1| response regulator receiver modulated diguanylate cyclase
           [Nitrosomonas sp. AL212]
 gi|325531505|gb|ADZ26226.1| response regulator receiver modulated diguanylate cyclase
           [Nitrosomonas sp. AL212]
          Length = 554

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/186 (31%), Positives = 90/186 (48%), Gaps = 13/186 (6%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           + L+  ++  + +  F     +  L   D L+GLLNH+A    L             LS 
Sbjct: 371 AYLISAVTTRVTRSRF-----LRSLMIHDGLTGLLNHTAIKEELAREVIRSSRLKTSLSF 425

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              DID+FK+IND +GH  GD+VI  L+  L         VGR GGEEFA     +    
Sbjct: 426 AMVDIDFFKKINDTYGHAAGDRVIKSLARLLKQRLRETDIVGRYGGEEFAIIMNDTDATS 485

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           AA + +++R +     +++S      +  S GIA+  H    +++   AD ALY AK+ G
Sbjct: 486 AAKVIDEIRNVFSRL-LHLSHDEEFSVNFSCGIADLAHFPDAASLSEAADAALYQAKQRG 544

Query: 252 RNRVVC 257
           RN+V+ 
Sbjct: 545 RNKVIV 550


>gi|149377589|ref|ZP_01895328.1| SENSORY TRANSDUCTION HISTIDINE KINASE [Marinobacter algicola DG893]
 gi|149358131|gb|EDM46614.1| SENSORY TRANSDUCTION HISTIDINE KINASE [Marinobacter algicola DG893]
          Length = 980

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 19/222 (8%)

Query: 61  LEYILVENLSLVIISITISLLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           ++Y L+    L + ++ +  LL Y +   G + +EL  + +R++ LS  D L+ + N S 
Sbjct: 759 VDYTLM--FQLTVGAVVLVGLLCYWNRKLGRLNRELAAANDRLAHLSVTDDLTQIGNRSY 816

Query: 118 FISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169
           F             +    ++   D D+FK+IND +GH  GD+ +  L+D +   F    
Sbjct: 817 FDREFSKSFHWCQRHGAGFAVAMVDADHFKEINDTYGHDAGDRCLVALADTMRTHFRRDT 876

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
             + R GGEEF      S  +E        R+ +   Q    +   I  T+S G+A    
Sbjct: 877 DRLTRFGGEEFVMFTSFSDREELVSRLEGFREGLAG-QTTCCNDEQIRFTVSIGLATGTP 935

Query: 230 KEP--ISTIIYRADQALYVAKKSGRNR---VVCFSDIENNTC 266
            +    +  +  AD+ALY+AK++GRNR   +   S  E+   
Sbjct: 936 GKDTVPAEFLRLADKALYLAKQNGRNRLEALTIESPAEDQAA 977


>gi|121728900|ref|ZP_01681908.1| GGDEF family protein [Vibrio cholerae V52]
 gi|121628828|gb|EAX61289.1| GGDEF family protein [Vibrio cholerae V52]
          Length = 469

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 57/214 (26%), Positives = 105/214 (49%), Gaps = 4/214 (1%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            I   ++ +   Y    + +    L++  +  +L L        ++L  +  ++S L++ 
Sbjct: 253 RILSRWVHIETIYPRYLMPILASGLLLSIVIYTLQLRRTVRLRAQQLEEANQKLSYLAKT 312

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+   N  +F   L +   +   L+++ FDID FK IND FGH  GD  I F+   + 
Sbjct: 313 DSLTDTANRRSFFEHLEAEQTRSGSLTLMVFDIDDFKTINDRFGHGAGDNAICFVVGCVR 372

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
               +  +  R+GGEEFA  A G + +E+  LA  + + +   +  +++  S+ +TIS G
Sbjct: 373 QALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKKWVVNAQHSLSLTISLG 432

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            A   H     ++ + AD  +Y  K++G+N+VV 
Sbjct: 433 CAFYLHPARPFSL-HDADSLMYEGKRNGKNQVVF 465


>gi|56750209|ref|YP_170910.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81300164|ref|YP_400372.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Synechococcus elongatus PCC 7942]
 gi|56685168|dbj|BAD78390.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81169045|gb|ABB57385.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Synechococcus elongatus PCC 7942]
          Length = 929

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 11/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E       +S  +  D L+GL N +     L             L+I+F D+D FK 
Sbjct: 483 DITEQKRYEEELSFSASHDVLTGLPNRAVLEDRLRQGCKMALRQKHSLAILFIDLDGFKL 542

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLR 200
           IND+ GH  GD ++  ++ ++         V R+GG+EF    +    E +   +A+ L 
Sbjct: 543 INDSIGHRSGDLLLVEVAQRMCEQVRAGDTVARIGGDEFIILLVDLKLENDVISIADRLL 602

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +   +     G  +H+T S GI       E  + +I +AD A+Y AK+ GRN    ++
Sbjct: 603 ASVA--RPYHIQGIYLHVTASMGITLSDGDIEQPTQLIQQADLAMYKAKQEGRNNYQWYT 660

Query: 260 DIEN 263
           +  N
Sbjct: 661 NDLN 664


>gi|300939080|ref|ZP_07153771.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
 gi|300455982|gb|EFK19475.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
          Length = 460

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 281 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 339 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 399 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 456


>gi|289648166|ref|ZP_06479509.1| sensory box protein [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 820

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 14/190 (7%)

Query: 83  GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           G +SG++L    ++  R     +S  +  D L+GL+N S F   L               
Sbjct: 348 GVVSGAVLVLHDMTQERQYIADLSWQAAHDPLTGLVNRSEFEHRLQRVLDGIDDQASSHC 407

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F D+D FK +ND  GH  GD+++  L   L         + RLGG+EF    +     
Sbjct: 408 LMFLDLDQFKLVNDTGGHAAGDELLRQLCRALPQGLRDGDTLARLGGDEFGVLLVDCPAD 467

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
            A  +A  LR+I++     +  G     T+S G+ + C     +   +  AD A Y+AK+
Sbjct: 468 TALDIAEGLREIVQTLHF-MWKGRPFMTTVSIGLVQLCDTPATLEGSLSAADMACYMAKE 526

Query: 250 SGRNRVVCFS 259
            GRNRV  +S
Sbjct: 527 RGRNRVQVYS 536


>gi|260893471|ref|YP_003239568.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Ammonifex
           degensii KC4]
 gi|260865612|gb|ACX52718.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Ammonifex
           degensii KC4]
          Length = 673

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 7/172 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
             ++  L   D L+GL +       L             +++  DID F+ +NDN+G+  
Sbjct: 234 QEKLHHLVHHDPLTGLPHRFYLEDHLKQAVLKARRGISSALLVIDIDNFQLVNDNWGYKA 293

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+++   +  L         + R+ G++F        E+EA  LA +LR+ +E     +
Sbjct: 294 GDRLLQAFARFLQENIREEDIIARVAGDKFMVLMEDVFEEEACKLAEELRRRVEEGSFEL 353

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             G    IT+SAGI+     E   T++ +AD AL  AK+ GRNRVV F   E
Sbjct: 354 -DGQRCRITVSAGISMVKGDEAAETVMSQADLALRRAKEEGRNRVVLFRPEE 404


>gi|302878223|ref|YP_003846787.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
 gi|302581012|gb|ADL55023.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
          Length = 734

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 65/277 (23%), Positives = 107/277 (38%), Gaps = 20/277 (7%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60
           + RS ++   +     KN E  S         +      A V+  + I L  I       
Sbjct: 207 VNRSFREMFGL-----KNGEDVSGRELEDILPLLNLHQQAQVVLTSGIALRGIDAALGEK 261

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
              + +  + L        LL   +    + +L      I QL+  D L+GL N S    
Sbjct: 262 WLRLTITGIRLAEEEEEEDLL---VIVEDITKLKAQAVHIEQLAFYDSLTGLPNRSLLRD 318

Query: 121 SLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            +         +    +I+F D+D FK +ND  GH +GD ++  ++ +L         V 
Sbjct: 319 RVQRVLAHSARHKNHGAILFIDLDNFKALNDTKGHNIGDLLLIEVAKRLQDCVRNSDTVA 378

Query: 174 RLGGEEFAAAA--LGSSEQEAAILANDLRKIIENS--QINISSGPSIHITISAGIAERCH 229
           R+GG+EF      L    Q+A   A D+ + +  S  +     G   + + S GI+    
Sbjct: 379 RMGGDEFVVVLEELNEDTQQAVAQAQDIGETVLASLNRPFNLQGFEHYSSASIGISLFRD 438

Query: 230 KE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            E  +  +   AD A+Y AK SGRN +  F      +
Sbjct: 439 NEIGMDDVFKHADTAMYQAKTSGRNTLRFFDPDMQAS 475


>gi|119773757|ref|YP_926497.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119766257|gb|ABL98827.1| response regulator receiver protein [Shewanella amazonensis SB2B]
          Length = 378

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 65/263 (24%), Positives = 104/263 (39%), Gaps = 23/263 (8%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLE--------YI 64
           L     +E+ S    +      F     T   +A   L+    + FY  E         +
Sbjct: 109 LLVLPGIETLSDVLSLAMAVALFPSIKLTAATVAPFLLY----SAFYRYEVYPESIYFTV 164

Query: 65  LVENLSLVIISITISLLLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           L      +II     ++  +   ++ +  E         +++ +D L+GL N   F   L
Sbjct: 165 LRTLFMFLIIMSAQRVIFKWFKKAVRRNVEKRRLLKHFRRMALLDGLTGLSNRRHFDEIL 224

Query: 123 GSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGR 174
                        LS++  DID+FK++ND  GH  GD  +  L   L  V         R
Sbjct: 225 DQEIRASTRTGHPLSLILLDIDFFKRLNDALGHQAGDDCLRQLGQLLSDVAARPRDLAVR 284

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPI 233
            GGEEFA     ++   A  +AN + K++  + I         HIT+S G+ +       
Sbjct: 285 YGGEEFAVLLPETTLTGAVEVANRIAKLLAKAAIPHPDSQVASHITVSQGLVQWQRGMDA 344

Query: 234 STIIYRADQALYVAKKSGRNRVV 256
             ++  +D ALY AK+SGRN  V
Sbjct: 345 EALLEASDAALYRAKESGRNCYV 367


>gi|264677649|ref|YP_003277555.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           CNB-2]
 gi|262208161|gb|ACY32259.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           CNB-2]
          Length = 822

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 82/191 (42%), Gaps = 12/191 (6%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFD 135
             I    + E      +++ L+  D L+ L N           +   G    ++++   D
Sbjct: 374 AIIVFHDVSEARAMALKMTHLAHHDPLTNLPNRMLLQDRTSQALQQAGRNGGQVALFILD 433

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAI 194
           +D+FK IND+ GH +GD+++  L+ +L         + R GG+EF           E + 
Sbjct: 434 LDHFKTINDSVGHSIGDQLLLQLAKRLQQFVRNGDTISRQGGDEFIILIPEIRHVDEVSQ 493

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           L   L +     +  +  G    +++S GI+      +    +   AD A+Y AK+ GR 
Sbjct: 494 LGERLLEACA--EPFLLDGVRYDLSMSIGISLYPDDADNQEALYRHADAAMYQAKQEGRG 551

Query: 254 RVVCFS-DIEN 263
           R   FS +IE+
Sbjct: 552 RFRFFSQEIEH 562


>gi|254503388|ref|ZP_05115539.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
 gi|222439459|gb|EEE46138.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
          Length = 273

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 17/183 (9%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           +K       +    +  D L+ + N   F+                LS+   DID+FK +
Sbjct: 78  VKARAELAEQFRMQAITDGLTQVFNRGHFLELCNHELKARSRTEAPLSVALLDIDHFKSV 137

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD+ +  ++  L         V R GGEEF+     ++ + A+ LA+ LRK 
Sbjct: 138 NDTYGHAAGDEALRVVARTLENSLRQSDVVCRWGGEEFSLLMPRTNSENASGLADRLRKT 197

Query: 203 IENSQINISSGPSIHITISAGIAE---------RCHKEPISTIIYRADQALYVAKKSGRN 253
           +    I    G S  +T S G+A              + I  +   AD ALY AK +GRN
Sbjct: 198 LSEIVIK-EGGTSFSLTASFGVATMAGPNPACKATGADAIDLLFKDADDALYKAKDAGRN 256

Query: 254 RVV 256
           +V+
Sbjct: 257 KVI 259


>gi|163760948|ref|ZP_02168026.1| hypothetical protein HPDFL43_02894 [Hoeflea phototrophica DFL-43]
 gi|162281729|gb|EDQ32022.1| hypothetical protein HPDFL43_02894 [Hoeflea phototrophica DFL-43]
          Length = 768

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 8/174 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGH 148
           EL  +  ++   S  D L+GL N       L   ++     +++  D+D FKQIND  GH
Sbjct: 331 ELEDARAQMEYNSLHDSLTGLPNRRYLDQHLTQASKDKSITALLHIDLDRFKQINDTLGH 390

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILANDLRKIIENSQ 207
             GD ++   +  L        F+ R+GG+EF  A    + E E + +A+ +   I    
Sbjct: 391 AAGDAMLIHTASILQESSRAGDFIARIGGDEFVLAITSETGEPELSRIASRIIDRIRKPV 450

Query: 208 INISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCFS 259
                       +S GIA    + P     ++  AD ALY AK +GRNR   F+
Sbjct: 451 PY--GKHECRFGVSIGIAFADLETPSCGERLLIDADIALYRAKSNGRNRFEFFT 502


>gi|158338315|ref|YP_001519492.1| diguanylate cyclase/phosphodiesterase with response regulator
           [Acaryochloris marina MBIC11017]
 gi|158308556|gb|ABW30173.1| diguanylate cyclase/phosphodiesterase with response regulator,
           putative [Acaryochloris marina MBIC11017]
          Length = 636

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 13/188 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDY 138
              + E      ++  ++  D L+ L N + F++ L           ++  +++F D D 
Sbjct: 187 NQEIAEREKVQQQLKHMAMHDPLTDLPNRTLFLTCLEETIQDTQKQTDQSFALLFLDCDR 246

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILAN 197
           FK IND+ GH VGD+ +  ++ +     G    + RLGG+EF       S EQ+A  +A+
Sbjct: 247 FKSINDSLGHLVGDQFLVAIAKRFQRCVGDQ-LLARLGGDEFTILLKNVSNEQQAINIAD 305

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            +++ +   +          ++ S GI       +  + ++  AD A+Y AK  G+ R +
Sbjct: 306 AIQRSL--LEPFHIGDNEFFVSASIGIVMSSPDYQQPTEMLRDADTAMYRAKAMGKARHI 363

Query: 257 CFSDIENN 264
            F+   + 
Sbjct: 364 VFNASMHE 371


>gi|99082069|ref|YP_614223.1| diguanylate cyclase/phosphodiesterase [Ruegeria sp. TM1040]
 gi|99038349|gb|ABF64961.1| diguanylate cyclase/phosphodiesterase [Ruegeria sp. TM1040]
          Length = 582

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 6/177 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGH 148
           + L  + +R+   S  D L+ L N       L      E +++V  D+D FK+IND  GH
Sbjct: 142 QALRETKDRLELQSLSDPLTHLPNRRHLDRELSRRLQTEPVALVRIDLDRFKKINDILGH 201

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILANDLRKIIENSQ 207
             GD V+  ++D L           R+GG+EF      G++ ++A  LA  + + +   +
Sbjct: 202 EAGDYVLCHVADVLRAHTKAGDVPARVGGDEFVVLCRSGTTLEQAQTLATRVLRAV--LE 259

Query: 208 INISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             +      +   S G+A     E   S ++  AD ALY AK SGR  V  F+    
Sbjct: 260 PVVWGNKRCNFGASFGVAHGVPGEITASELLSNADAALYRAKASGRGAVEVFTSEMR 316


>gi|90020710|ref|YP_526537.1| hypothetical protein Sde_1063 [Saccharophagus degradans 2-40]
 gi|89950310|gb|ABD80325.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 451

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 64/221 (28%), Positives = 94/221 (42%), Gaps = 19/221 (8%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI 100
           T+I I    L + GL+  Y L+    +          +S LL        ++L      I
Sbjct: 227 TLILIWMTILIWEGLSRIYWLQQKAKKE------ERRLSELLN-----NYQQLESEKREI 275

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFFDIDYFKQINDNFGHPVGDKV 154
             LS  D L+  LN S     + +         ++++   DID+FK IND FGH VGD  
Sbjct: 276 ENLSNRDTLTQALNRSGLSQKVETIFNSESPAPQVAVFVIDIDFFKSINDTFGHDVGDTT 335

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  + + +     +   +GR GGEEF      +  + A  +AN LRK I           
Sbjct: 336 LQKVVNIIQTNMRSEDILGRWGGEEFVLITRVTDLKTALHVANKLRKCIAVHNFEFPDDR 395

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              +TIS G+      +    +  RAD ALY AK +GRN V
Sbjct: 396 --QLTISMGLTMSEIGDRFEDVFKRADVALYKAKHTGRNCV 434


>gi|70731874|ref|YP_261616.1| YaiC/YhcK/ArdA family protein [Pseudomonas fluorescens Pf-5]
 gi|68346173|gb|AAY93779.1| YaiC/YhcK/ArdA family protein [Pseudomonas fluorescens Pf-5]
          Length = 356

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 69/272 (25%), Positives = 112/272 (41%), Gaps = 17/272 (6%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL--- 61
               L  +             T +   ++         +FI       IG+   + L   
Sbjct: 78  YDSMLGGFWAATMQFNPLPAVTILSMMAMNNVAAGGVRLFIRGALAQGIGVLLSWSLFGA 137

Query: 62  ----EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
                   ++  + + +     L +G +   +  +L      +S LSR D L+GLLNH +
Sbjct: 138 SFNTRISPLQIYACLPMLTLYPLAVGMVCYRLAIKLSEHKRALSALSRTDSLTGLLNHGS 197

Query: 118 FISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           +   L              SI   DID+FK IND +GH +GD V+  LS++L        
Sbjct: 198 WKDLLHIKFHKCQQQQIDASIALIDIDHFKAINDTYGHIIGDTVLRHLSNELRRNLRHDD 257

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
             GR GG+EF         Q+A  +   LR++   SQ        + +++S G+A    +
Sbjct: 258 LAGRYGGDEFCVILPRMDRQQALEVMERLRQVF--SQYRHPQVAELKVSLSIGLAAFDRE 315

Query: 231 -EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            +  S+ +  AD+ALY+AK SGRNR+    D 
Sbjct: 316 FQDPSSWLNAADKALYLAKNSGRNRIASNDDE 347


>gi|309779153|ref|ZP_07673917.1| diguanylate cyclase [Ralstonia sp. 5_7_47FAA]
 gi|308922074|gb|EFP67707.1| diguanylate cyclase [Ralstonia sp. 5_7_47FAA]
          Length = 448

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 8/172 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           +L  + +  S  +R D L+G LN      +L          N  L I F DID FK IND
Sbjct: 276 QLRKALDMASASARHDLLTGALNRKGLEEALEREVARAARQNTALCIAFLDIDDFKSIND 335

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD  ++ L+            + R GGEEF      +S +E       L++ + 
Sbjct: 336 THGHSFGDDALSHLAQVARESMRPQDTLARFGGEEFVILMPDTSLEEGVQTIVRLQRAL- 394

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +  ++    + IT SAG+AE    EP    I RAD+A+Y AK++G+N+VV
Sbjct: 395 TQRFFVAGDTRLFITFSAGVAEVGKDEPPMAAIQRADRAMYQAKRAGKNKVV 446


>gi|304411858|ref|ZP_07393469.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS183]
 gi|307303374|ref|ZP_07583129.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica BA175]
 gi|304349718|gb|EFM14125.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS183]
 gi|306913734|gb|EFN44156.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica BA175]
          Length = 1419

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 9/185 (4%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQIND 144
            S +         + +L+  D L+GL N S    +L +   +    +++  D+D FK+IND
Sbjct: 971  SDISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLSNLVNREIAHALMVLDLDNFKRIND 1030

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKII 203
            + GH +GD ++  ++ ++  +      + RLGG+EFA     GS    +A +AN +   I
Sbjct: 1031 SLGHQIGDTLLKLVAARIKSLLPKNTSIYRLGGDEFAIVLDKGSDISASAAIANRI---I 1087

Query: 204  ENSQINIS-SGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDI 261
            E  +     S   + + +S GI      E     ++ +AD A+Y AK +G N    +S+ 
Sbjct: 1088 EGLKPAFEVSNEQLVLGLSIGIVLFPEDEQSEQALLRKADIAMYHAKSAGGNCYQFYSES 1147

Query: 262  ENNTC 266
             N   
Sbjct: 1148 LNQHA 1152


>gi|326315979|ref|YP_004233651.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372815|gb|ADX45084.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 1120

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 21/205 (10%)

Query: 78  ISLLLGYISG-----SILKELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYN 126
           I  + G+++G       + +   +  +I  L+  D L+GL N    +       +    N
Sbjct: 643 IRDMHGHVTGLLSVSRDITDRKKAEQQIELLAFFDALTGLPNRRLLLDRLQRAGAACQRN 702

Query: 127 EKL-SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           EKL +++F D+D FK +ND  GH +GD+++  ++ +L     T   V R GG+EF     
Sbjct: 703 EKLGALLFIDLDNFKDLNDTLGHDMGDRLLVQVAQRLQECVRTSDTVARFGGDEFVVMLE 762

Query: 186 GSSEQ------EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIY 238
           G          +A  +A  L   + N    + +      T S GI     +   +  ++ 
Sbjct: 763 GLDADTAQAALQAEQVAEKLLAQL-NRPFEMGAQQHYS-TPSIGITLFGDQRRSVDELLK 820

Query: 239 RADQALYVAKKSGRNRVVCFSDIEN 263
           RAD A+Y AK +GRN    F     
Sbjct: 821 RADLAMYQAKAAGRNTQRFFDPDMQ 845


>gi|256018713|ref|ZP_05432578.1| putative diguanylate cyclase [Shigella sp. D9]
 gi|323181285|gb|EFZ66778.1| diguanylate cyclase domain protein [Escherichia coli 1357]
          Length = 264

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 66/255 (25%), Positives = 121/255 (47%), Gaps = 26/255 (10%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGL--TPFYGLEYI----LVENLSLVIISITISLL 81
           M++ + + +I I   + + ++ L++ GL    + G+  I    ++ N+SL+ +S   S+ 
Sbjct: 1   MVWKASYVTIMIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMS-RYSVS 59

Query: 82  LGYISGSI------------LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GS 124
             YIS +I            +  +F +      ++  D L+ + N + F + L      +
Sbjct: 60  TWYISRTIEVVSKLTVMVIFMCHIFSALRVTKNIAHRDPLTNIFNRNYFFNELTVQSASA 119

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
                 ++  DID+FK++ND +GHPVGD+VI  + + +         + R+GGEEF    
Sbjct: 120 KKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFGVLL 179

Query: 185 LGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYRADQ 242
                + A  LA  +R+ +E    +         +TIS G +  + +    + I   AD 
Sbjct: 180 TDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRLADN 239

Query: 243 ALYVAKKSGRNRVVC 257
           ALY AK++GRN+VV 
Sbjct: 240 ALYEAKETGRNKVVV 254


>gi|294635274|ref|ZP_06713775.1| putative sensor-type protein [Edwardsiella tarda ATCC 23685]
 gi|291091340|gb|EFE23901.1| putative sensor-type protein [Edwardsiella tarda ATCC 23685]
          Length = 1002

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 10/189 (5%)

Query: 80  LLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSI 131
           +L+GY+     + E      ++S  +  D L+GL N  +F  +L         Y+++  +
Sbjct: 532 ILMGYVVVFQDVSETRTLLRQLSYSALHDPLTGLPNRVSFEQALRRALRGAIEYHQRHVL 591

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           VF D+DYFK INDN GH  GD+++  L+  +  +      + RLGG+EFA         +
Sbjct: 592 VFLDLDYFKSINDNAGHAAGDRLLQDLAQLMRSLLRPQDTLARLGGDEFALILCDCELSQ 651

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKS 250
             ++ + L   I         G   HI  SAG+ +  H   +    I +AD A Y AK  
Sbjct: 652 GKLMVDQLIHEIAAYPFPW-QGQQYHIGASAGLTQLQHDNALADETINQADAACYQAKHR 710

Query: 251 GRNRVVCFS 259
           GR R  C S
Sbjct: 711 GRGRAFCHS 719


>gi|256112719|ref|ZP_05453640.1| diguanylate cyclase GGDEF domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
          Length = 703

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFF 134
           L+G +    + E      R+  ++  D L+GL N + F   +GS  +        ++ + 
Sbjct: 249 LIGLV--EDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHVGSLLKKGSDCDPFALFYL 306

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK +ND+  H  GD+++  ++ +L  +     F+ RLGG+EFA      +  + A+
Sbjct: 307 DIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGTLAQIAM 366

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
            A+ +    ++    +  G +  +T S GIA+   H +    ++  AD ALY +K  GR 
Sbjct: 367 FADRVLSAFQD--PFVLGGNAEFVTCSMGIAQAPLHGDNPDVLMRNADLALYASKSGGRR 424

Query: 254 RVVCFSD 260
               + D
Sbjct: 425 TFRFYQD 431


>gi|320184820|gb|EFW59611.1| Putative Heme-regulated two-component response regulator [Shigella
           flexneri CDC 796-83]
          Length = 195

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 16  TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 73

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 74  EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 133

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 134 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 191


>gi|261253856|ref|ZP_05946429.1| hypothetical protein VIA_003883 [Vibrio orientalis CIP 102891]
 gi|260937247|gb|EEX93236.1| hypothetical protein VIA_003883 [Vibrio orientalis CIP 102891]
          Length = 648

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGS--YNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + +D L+GL N   F   L    +NE  L +++ DID FK IND+ GH +GDKVI  +S 
Sbjct: 222 AHLDSLTGLYNRFGFTKRLEQLIHNETPLIMLYLDIDNFKNINDSLGHHIGDKVIKEVSS 281

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHIT 219
           +L  +      +G LGG+EF              +L+  +  +I  +Q       S  + 
Sbjct: 282 RLKRLLPQQAVLGHLGGDEFGIILPEPDNNRMVEMLSERIISLI--NQPFDLHHFSKRLA 339

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +A          ++  AD A+Y AK  GRNR++ F+D  N   
Sbjct: 340 CSIGSVAYPGDGNDARILLQNADTAMYEAKDRGRNRLIKFNDQMNKEA 387


>gi|254785711|ref|YP_003073140.1| response regulator receiver domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237687512|gb|ACR14776.1| response regulator receiver domain protein [Teredinibacter turnerae
           T7901]
          Length = 221

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 10/175 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQI 142
           L +L      + Q ++ D L+GL N   F S L    E         +++  D+D+FK+ 
Sbjct: 26  LSQLRDRVTELEQHAQTDPLTGLYNKRYFDSVLHRELERTQRTGMPTTLIMLDVDHFKRF 85

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD  +  L+  L           R GGEEF      +    A  +A  LR+ 
Sbjct: 86  NDTHGHVAGDHALKHLARTLRSNLRNLDIACRFGGEEFVVVLPSTPLLVAIQVAERLRQQ 145

Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255
           + NS + I +   + +T S G+    H+  + +   + R D+ LY+AK +GRN V
Sbjct: 146 LTNSTLVIDASA-MKLTASFGVDTYTHEHRDNLLDFVERVDKQLYLAKSAGRNCV 199


>gi|167723092|ref|ZP_02406328.1| hypothetical protein BpseD_28998 [Burkholderia pseudomallei DM98]
          Length = 688

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 66/215 (30%), Positives = 101/215 (46%), Gaps = 15/215 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRIS----QLSRIDCLSGLLNHSAFIS 120
           L   ++L  ++I I  L+          L  S +R+S    +++  D L+ L N      
Sbjct: 214 LAATVALFTVAILIVALILSHFDVRTTLLAGSVSRLSGQIVRMTAFDTLTDLPNRHTLNE 273

Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            LG           KL+I+F D+D FK IND+ GHP GD+V+   S +L+        V 
Sbjct: 274 HLGRALAAARARGGKLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVA 333

Query: 174 RLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           RLGG+EF       SS+ EAA +A D+ + +   + N   G ++ +T S GIA      +
Sbjct: 334 RLGGDEFVVLLESVSSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGD 391

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              T++  AD A+Y AK+SGR     F    +   
Sbjct: 392 TADTLLRHADAAMYAAKRSGRCTYRFFEATMDEAA 426


>gi|170742454|ref|YP_001771109.1| diguanylate cyclase [Methylobacterium sp. 4-46]
 gi|168196728|gb|ACA18675.1| diguanylate cyclase [Methylobacterium sp. 4-46]
          Length = 353

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 9/181 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDY 138
           S   ++ L  +   +   S  D L+GL N   F   L    E+ +       ++  DID+
Sbjct: 162 SREEIQALHETLEAVRVESLTDPLTGLGNRKLFEQVLRKSVEEAAANAAPTALIILDIDH 221

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+ ND +GH  GD+V+  ++  +  +      + R GGEEF       SE +A  LA  
Sbjct: 222 FKRFNDVYGHLTGDRVLRLVALTMREMVDGRATIARFGGEEFGVIMPCGSEGDAVALAER 281

Query: 199 LRKIIENSQ-INISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +R  +   + +  SSG S+  +TIS G+A     +   +++ RADQ ++ AK+SGRNRVV
Sbjct: 282 IRTSVMGRELVKRSSGESLGRVTISVGVATHRPGDTAVSLLERADQCMFAAKRSGRNRVV 341

Query: 257 C 257
            
Sbjct: 342 V 342


>gi|82544060|ref|YP_408007.1| hypothetical protein SBO_1567 [Shigella boydii Sb227]
 gi|81245471|gb|ABB66179.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|332095579|gb|EGJ00591.1| diguanylate cyclase domain protein [Shigella boydii 3594-74]
          Length = 208

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 29  TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 86

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 87  EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 146

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 147 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 204


>gi|117919912|ref|YP_869104.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. ANA-3]
 gi|117612244|gb|ABK47698.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. ANA-3]
          Length = 1433

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 88/184 (47%), Gaps = 7/184 (3%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQIND 144
            S +         + +L+  D L+GL N S    +LG+   K    +++  D+D FK+IND
Sbjct: 985  SDISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLGNLVNKEITHALMVLDLDNFKRIND 1044

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKII 203
            + GH +GD+++  +S ++  +      + RLGG+EFA     +S+  A A +A  + +  
Sbjct: 1045 SLGHQIGDQLLKLVSIRIKSILPKNTSIYRLGGDEFAIVLDKTSDISASAAIAGRVIEAF 1104

Query: 204  ENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDIE 262
            +   +       + + +S GI      E     ++ +AD A+Y AK +G N    +S+  
Sbjct: 1105 KT--MFEIGNEQLVLGVSIGIVFYPEDEQSEQALLRKADIAMYHAKSAGGNCYQFYSESL 1162

Query: 263  NNTC 266
            N   
Sbjct: 1163 NQHA 1166


>gi|330986672|gb|EGH84775.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 308

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 8/170 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y   +Q +  D L+   N  A    L         + + LS++  DID+FK++ND +GH 
Sbjct: 140 YRIATQTALRDPLTSTGNRIAMDRGLAREIEISRRHKQPLSLLMLDIDHFKKVNDEYGHH 199

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  L         V R GGEEF      +    A ++   LR+ + N +  
Sbjct: 200 TGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGASSAELIGERLRQAVRNLEFR 259

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               P++ +T+S G +     E   +++ RAD ALYVAK+ GRNR+   S
Sbjct: 260 ELD-PALTMTVSLGCSTLLPAETADSLLRRADNALYVAKREGRNRLAMAS 308


>gi|260463353|ref|ZP_05811554.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075]
 gi|259030943|gb|EEW32218.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075]
          Length = 260

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 100/227 (44%), Gaps = 10/227 (4%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR 99
            T  FIA  F       P+   E +    L+ +++ + +     +     +++L I+   
Sbjct: 20  GTAFFIAVAFFVDSFNFPYLSTEAVWRAQLTDLMLPLVLGGSFLFFLMWKIRQLAIAQRD 79

Query: 100 ISQLSRIDCLSGLLNHSAF----ISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPV 150
           +S ++  D L+ +LN  AF     + L    ++      +++  D D+FK IND  GH  
Sbjct: 80  LSVIAATDSLTAVLNRGAFSMLVEAYLEQTRKQELTRSGALLIIDADHFKSINDRLGHDC 139

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+ +  ++  +         VGR+GGEEF     G    ++ ++A  +R+ I     + 
Sbjct: 140 GDQALKLIAQTIKAQLRGSDIVGRIGGEEFGVFLPGVDPSQSWLVAESIRRRISEMDFS- 198

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             G S  +++S G            I   AD+ LY AK +GR++V  
Sbjct: 199 PGGRSCPLSVSIGGTSFNGPTTYEAIFSAADRRLYAAKSNGRDQVSF 245


>gi|228969547|ref|ZP_04130353.1| Sensory box/GGDEF [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228790163|gb|EEM37939.1| Sensory box/GGDEF [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 785

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 10/205 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           +L   +++V I I       Y+    +  +    + I+ L+  D ++ + N   F   L 
Sbjct: 318 MLFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELD 377

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     +K  +++ D++ FK IND  GH +GD+V+  ++ +        + + R+G
Sbjct: 378 RSIKRVQKTQDKFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPTIPLARIG 437

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           G+EFA      +EQ+   L   L  I E  +  + +  S ++++S GIA         +T
Sbjct: 438 GDEFAIIVHNQTEQQLLNLCKTLFLITE--EPFVVNQHSFYLSLSIGIAVYPFGGINTTT 495

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++  AD A+Y AK+ G N V  + +
Sbjct: 496 LLQHADIAMYSAKEKGNNAVCMYDE 520


>gi|212637440|ref|YP_002313965.1| sensory box protein [Shewanella piezotolerans WP3]
 gi|212558924|gb|ACJ31378.1| Sensory box protein [Shewanella piezotolerans WP3]
          Length = 1497

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 11/191 (5%)

Query: 85   ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
            +  S + +   +   + +L+  D L+GL N S F S L            KL+++F D+D
Sbjct: 1035 VVFSDITDRKRTEADLRRLANYDVLTGLPNRSLFSSKLSQSIYQAEKEGGKLALLFLDLD 1094

Query: 138  YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILA 196
             FK +ND++GH +GD ++   S++L         + R GG+EF               L 
Sbjct: 1095 RFKHVNDSYGHSMGDALLVEASNRLQTFISQENVLCRFGGDEFVILLRDDIYIDSINRLC 1154

Query: 197  NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
              L   I+  Q     G   +I+ S G++          T+I  AD A+Y AK  G+   
Sbjct: 1155 EQLLASIQ--QPFDLYGREFYISTSIGVSLWPEDAKQPETLIKNADLAMYHAKDEGKGNF 1212

Query: 256  VCFSDIENNTC 266
              +S   N   
Sbjct: 1213 KYYSQDRNAEA 1223


>gi|170742613|ref|YP_001771268.1| diguanylate cyclase [Methylobacterium sp. 4-46]
 gi|168196887|gb|ACA18834.1| diguanylate cyclase [Methylobacterium sp. 4-46]
          Length = 404

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 104/232 (44%), Gaps = 17/232 (7%)

Query: 35  FSIFIATVIFIANIFLFYIGLT-PFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
           + + +AT +  A I +  +    P Y +   +     LV   +T+     ++SG+ + E 
Sbjct: 143 WIVMLATAVLFAPILVGGLMRPEPAYQVGAAI-----LVPFWLTVRESARHLSGAFI-ER 196

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGH 148
             +   ++  +  D L+GLLN + F++ LG+      +   +++  D+D FK++ND  GH
Sbjct: 197 LEAKRALAHQAEHDALTGLLNRAGFLARLGAALEQAGSRPFALIAIDLDGFKRVNDRLGH 256

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           PVGD V+  +  +L          GRLGG+EF           AA  A+   ++I     
Sbjct: 257 PVGDAVLVEVGMRLRRCLAPDDVAGRLGGDEFMILTRADGGVPAA--ADRAERVIAALSD 314

Query: 209 NISSGPSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRVVC 257
                    I  SAG+A           + ++ R D+ALY AK+ GR R   
Sbjct: 315 PYPVAEPQRIGASAGLASSEDWREALDAAALLERVDEALYAAKRGGRGRWCA 366


>gi|95928278|ref|ZP_01311026.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
 gi|95135549|gb|EAT17200.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
          Length = 477

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 11/172 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
            + E      R+  L+  D L+GL N   F   L     K       L++ FFD+D+FK 
Sbjct: 280 DVSEHKAIEKRLQHLAHHDPLTGLPNRILFRDRLQHALHKAQRNNTLLALCFFDLDHFKS 339

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLR 200
           IND+FGH  GD+V+  ++++L           RL G+EF         Q+    +A+ + 
Sbjct: 340 INDSFGHDAGDRVLTCIAERLEKTIRASDTAARLAGDEFVVILEDLEHQDLIQPIASKIL 399

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSG 251
             I  +Q    +   + +T S GI+          T++ +AD A+Y AKK+G
Sbjct: 400 SRI--NQPITVARQQVRVTSSLGISLYPLDTLDSDTLLNQADTAMYRAKKNG 449


>gi|67924578|ref|ZP_00517994.1| PAS:GGDEF [Crocosphaera watsonii WH 8501]
 gi|67853577|gb|EAM48920.1| PAS:GGDEF [Crocosphaera watsonii WH 8501]
          Length = 860

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             +++   +   +      D L+ L N   F   L         +   ++++F DID F 
Sbjct: 399 RDIRDRKQAEEELQYQLLHDPLTNLPNRQLFKQQLATALAHAKRHEHLMAVIFIDIDSFT 458

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
            IN+  GH +GDKV+   + +L         V R G +EF        + ++   LA  +
Sbjct: 459 HINNTLGHSLGDKVLQSFAKRLSSCIRAGDMVNRWGSDEFVVLLPQIKNTEDTVKLAQRI 518

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +I++   I       + I  S GIA      +    ++  AD ALY  K+ G+N    +
Sbjct: 519 FEILQRPLI--LGKHRLQIKCSIGIAIYPQDGDNAEGLLKNADTALYRTKEQGKNYYQFY 576

Query: 259 S 259
           S
Sbjct: 577 S 577


>gi|94312156|ref|YP_585366.1| diguanylate cyclase [Cupriavidus metallidurans CH34]
 gi|93356008|gb|ABF10097.1| conserved hypothetical protein; GGDEF-family protein [Cupriavidus
           metallidurans CH34]
          Length = 599

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 71/253 (28%), Positives = 123/253 (48%), Gaps = 30/253 (11%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE----NLSLVIISIT-----ISLL 81
           F+I F++ + T+I++ ++F   I L PF+     ++     NLS+ + S       I  L
Sbjct: 340 FAIAFAL-LGTMIWLHSLFRRQI-LKPFFAATRSILAIANGNLSVRVPSPNNYRGEIRAL 397

Query: 82  LGYIS---------GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSY 125
           L  +            + ++      +++ ++  D L+ LLN  A  +          + 
Sbjct: 398 LEAVHTLKRYSLDKQQLEQDRQRLIAQLTTMAETDALTQLLNRRALEARACDLCASPAAD 457

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              +++V FDID+FK+IND +GH  GD+ +  +      V GT     R GGEEFA  +L
Sbjct: 458 KPYVALVMFDIDHFKRINDTYGHIAGDRALEIVGAVCREVLGTGDLAARFGGEEFAVVSL 517

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH---KEPISTIIYRADQ 242
            S+  EA  LA  L++ +   ++ + S     +T+S G+A        + +S +I +AD 
Sbjct: 518 VSTPGEALRLAEQLKEKLREIRVTLESARPFGMTVSLGVAIGRREDVGQDLSALIRQADL 577

Query: 243 ALYVAKKSGRNRV 255
            LY AK+ GRNR+
Sbjct: 578 MLYRAKRGGRNRI 590


>gi|319789724|ref|YP_004151357.1| diguanylate cyclase [Thermovibrio ammonificans HB-1]
 gi|317114226|gb|ADU96716.1| diguanylate cyclase [Thermovibrio ammonificans HB-1]
          Length = 423

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 16/185 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDI 136
           +   ++++L     + S L+  D L+GL N +          ++    +    S+   D+
Sbjct: 242 LIAYLVEKLHEFAKKASNLAMKDPLTGLFNRNYLRVFVEGKLLALWHRHRFPFSVAMIDL 301

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK+IND +GH  GD+V+  L+  L           R GGEE       + ++ A    
Sbjct: 302 DNFKRINDTYGHGKGDEVLKGLAKLLQGTLRGSDIAVRFGGEEILVVMPYTDKESAKKAL 361

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGR 252
             +RK+ +     IS      +T SAGIA          P+  +I  AD+ LY AKK G+
Sbjct: 362 ERVRKLFKELDFEISQ----PVTFSAGIASFPDDVESVIPLERLIKIADERLYRAKKMGK 417

Query: 253 NRVVC 257
           +R+V 
Sbjct: 418 DRIVI 422


>gi|262392421|ref|YP_003284275.1| sensory box/GGDEF family protein [Vibrio sp. Ex25]
 gi|262336015|gb|ACY49810.1| sensory box/GGDEF family protein [Vibrio sp. Ex25]
          Length = 626

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 91/191 (47%), Gaps = 22/191 (11%)

Query: 84  YISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVF 133
           YI+  + + E      ++  LS  D L+GL N   F   L  Y         +    +  
Sbjct: 444 YITSLVDISEQKELEEKLRNLSEKDGLTGLWNRRKFEEQLAQYAGIIERYPDSPPACLAL 503

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           FDID+FK+IND  GH  GDKVI  +++ L+    +  FV R+GGEEFA     ++ +EA 
Sbjct: 504 FDIDHFKRINDELGHDEGDKVICSVAETLLKEVRSTDFVSRVGGEEFAVIMPHTTLEEAE 563

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           ++ N LR  ++             IT+SAG ++       +     AD ALY +K +GRN
Sbjct: 564 VVLNRLRVAVQLRS-------DRAITVSAGYSDLTSDRTRT--YKCADIALYESKSAGRN 614

Query: 254 RV---VCFSDI 261
            V     F DI
Sbjct: 615 CVSLCHSFDDI 625


>gi|238761920|ref|ZP_04622894.1| Diguanylate cyclase [Yersinia kristensenii ATCC 33638]
 gi|238700034|gb|EEP92777.1| Diguanylate cyclase [Yersinia kristensenii ATCC 33638]
          Length = 409

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 9/165 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQINDNF 146
           L    + ++  +  D L+GL N + F   L         N+  +++F D D+FK+INDN+
Sbjct: 214 LTRENDSLAHRAAHDSLTGLANRAFFEGRLNRIINDCKTNQHAAVLFLDGDHFKEINDNY 273

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKIIEN 205
           GH  GD V+  ++D+L  +      V RLGG+EFA          +   +AN++ K +  
Sbjct: 274 GHAAGDVVLTSIADRLRALLRESDLVARLGGDEFAILLAPIHDTDDVLTIANNIIKSM-T 332

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
             I +S G  I  ++S G+A    H +    ++ RAD+A+Y AKK
Sbjct: 333 HPIVLSDGQEITTSLSIGVAIYPDHAQTPDELLQRADEAMYQAKK 377


>gi|296505729|ref|YP_003667429.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
 gi|296326781|gb|ADH09709.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
          Length = 909

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
           Y+    + E      +I+ L+  D L+ L N  AF   L           +  +++F D+
Sbjct: 459 YLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKPFAVMFLDL 518

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAIL 195
           D FK IND  GH VGD ++  ++ +L  +  + M + RL G+EF        ++ +   +
Sbjct: 519 DRFKVINDTLGHRVGDLLLIAVAKRLEQIATSNMKLARLAGDEFTILIENYKKKPDVQKI 578

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
           A+ +   + N    I +   + I+ S GIA      E   +I+  AD A+Y AK  G+N 
Sbjct: 579 ADRIVAAM-NEPFEIENQH-LQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 636

Query: 255 VVCFS 259
              ++
Sbjct: 637 SSLYT 641


>gi|288549691|ref|ZP_06390767.1| protein gmr [Enterobacter cancerogenus ATCC 35316]
 gi|288317934|gb|EFC56872.1| protein gmr [Enterobacter cancerogenus ATCC 35316]
          Length = 663

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 89/185 (48%), Gaps = 8/185 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        + ++ IV+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRVLANTDTITGLPNRNAIHELISDAINARGDTQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  ++  ++        + RLGG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHMFGDQLLQAVALAILSCLDEGQTLARLGGDEFIVMASDTSQGSLEAMASRIL 338

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +   Q        ++   S GIA    H     ++I  AD A+Y AK+SGR +   FS
Sbjct: 339 TRLR--QPFRIGLIEVYTGCSLGIALAPQHGTDRESVIRNADTAMYTAKESGRGKFCVFS 396

Query: 260 DIENN 264
              N 
Sbjct: 397 PEMNQ 401


>gi|312971478|ref|ZP_07785653.1| protein gmr [Escherichia coli 1827-70]
 gi|310336075|gb|EFQ01275.1| protein gmr [Escherichia coli 1827-70]
          Length = 639

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 197 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINHADNNKVGVVYLDLDNFK 256

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 257 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 315

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 316 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 373

Query: 259 SDIENN 264
           +   N 
Sbjct: 374 TPEMNQ 379


>gi|300867490|ref|ZP_07112141.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300334484|emb|CBN57309.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 611

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 12/185 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQIN 143
           E  +   ++ +++  D L+GL N   F+  L             + +++F D D FK IN
Sbjct: 168 ERKLLEEQLLKMALHDALTGLPNRVLFMERLVQALNCSKEVKGYQFAVLFLDCDRFKVIN 227

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKI 202
           D+ GHPVGD+++  L+ +L         + RLGG+EFA   +   +   A   A  + + 
Sbjct: 228 DSLGHPVGDELLIALARRLEKSLHPKNTLARLGGDEFAVLIVDIENITTATQSAERILQR 287

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +      +     + I  S GIA      E    ++  AD A+Y AK  G+ +   F   
Sbjct: 288 LA-LPFQLKR-YEVFINASIGIAVGNFNYEQPEHLLRDADTAMYRAKNLGKGQYQIFDPA 345

Query: 262 ENNTC 266
            ++  
Sbjct: 346 MHDAA 350


>gi|260854984|ref|YP_003228875.1| modulator of Rnase II stability [Escherichia coli O26:H11 str.
           11368]
 gi|257753633|dbj|BAI25135.1| modulator of Rnase II stability [Escherichia coli O26:H11 str.
           11368]
 gi|323153280|gb|EFZ39538.1| protein gmr [Escherichia coli EPECa14]
          Length = 661

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|187732236|ref|YP_001880121.1| RNase II stability modulator [Shigella boydii CDC 3083-94]
 gi|187429228|gb|ACD08502.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Shigella boydii CDC 3083-94]
          Length = 661

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|104784028|ref|YP_610526.1| diguanylate cyclase [Pseudomonas entomophila L48]
 gi|95113015|emb|CAK17743.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           entomophila L48]
          Length = 400

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 72/285 (25%), Positives = 120/285 (42%), Gaps = 37/285 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL------FYIG 54
           + +S  + L  WL  E    S     +M    + + +F+A  I +   +L          
Sbjct: 114 LEQSFPEALLGWLA-EIRWPSLHGQ-WMSLIQLAYPLFLAVFILLVVQYLREPRPLHAAQ 171

Query: 55  LTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           +    G+ ++L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL 
Sbjct: 172 VIGLIGIFWMLPKTFILPFTLNIMCSQVMLMIAAAVSHEAY-------QMAFRDELTGLP 224

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A    +        I   D+D+FK+ ND  GH VGD+V+  ++ +L  V G      
Sbjct: 225 GRRALNERMQRLGRNYVIAMTDVDHFKKFNDTHGHDVGDQVLRLVASRLSKVTGGGRAYR 284

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS------------------ 215
             G EEFA    G + +E       +R++I N  I +    S                  
Sbjct: 285 YGG-EEFALVFAGKTAEECLPHLEAVREMIANYAIQLRDQNSRPNDDSAGRQRRGGGASS 343

Query: 216 -IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            + +TIS G+AER         ++  ADQALY AK +GRN V+ F
Sbjct: 344 TVSVTISIGVAERQADHRNPDEVLKSADQALYSAKGAGRNCVMTF 388


>gi|332992603|gb|AEF02658.1| diguanylate cyclase with beta propeller sensor [Alteromonas sp. SN2]
          Length = 1041

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 62/266 (23%), Positives = 105/266 (39%), Gaps = 35/266 (13%)

Query: 26   TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI 85
                ++    + F+A V     ++L ++     +      ++ L   + + T  LL    
Sbjct: 757  VMPAWYQTLLAKFVAIVFLCIAVYLGHLLGVRHHRQRQAFLKKL---VNARTAELLAA-- 811

Query: 86   SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS-------- 130
                 K+L      + + S  D L+GL N       +         Y E  +        
Sbjct: 812  ----NKQLKEQATALKEASLTDPLTGLHNRRYLAQRIERDIALVQRYYENCAQTYSIPKN 867

Query: 131  -----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
                     D+D FK IND +GH  GDKV+    ++L  +F    ++ R GGEEF     
Sbjct: 868  QHDILFFVIDLDDFKNINDTYGHQAGDKVLVETQNRLKHIFRETDYLIRWGGEEFLVVVH 927

Query: 186  GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE------PISTIIYR 239
             +  ++A ++A  +  I+ +    +S G   H+T S G A     +         T I  
Sbjct: 928  NTPREDAYVMAERVVDIVGSRAFQLSEGTQRHVTCSIGYAAYPLSQQHYDIFDWQTTIGF 987

Query: 240  ADQALYVAKKSGRNRVVCFSDIENNT 265
            AD ALY AK + RN  +  + I ++T
Sbjct: 988  ADTALYGAKNNRRNTWMGLTSIPSST 1013


>gi|320177292|gb|EFW52297.1| hypothetical protein SDB_00244 [Shigella dysenteriae CDC 74-1112]
          Length = 422

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 210 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 269

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 270 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 328

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 329 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 386

Query: 259 SDIENN 264
           +   N 
Sbjct: 387 TPEMNQ 392


>gi|163847215|ref|YP_001635259.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|163668504|gb|ABY34870.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
          Length = 263

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 80/173 (46%), Gaps = 9/173 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           E    Y  +  L+  D L+G+ N  AF  +L         Y   L+++  DID FK  ND
Sbjct: 80  ENARLYAEVEALAVTDSLTGIANRRAFDRALEREFVRARHYGYPLALIMVDIDSFKHYND 139

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD  +  ++  L        FV R GGEEFA     + +Q A  +A  +R+  E
Sbjct: 140 TYGHLAGDDRLRAVAQLLAQSVREVDFVARYGGEEFAIILTNTDKQTAIAVAEQIRRKAE 199

Query: 205 NSQINISSGPSI-HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
            S     +G  +   T+S G+A      +    ++  AD A   AK++G+NRV
Sbjct: 200 MSCPEPLNGLPVSGYTLSLGVAAFPDDAQTPVALLLAADNAELAAKRAGKNRV 252


>gi|315126379|ref|YP_004068382.1| response regulator [Pseudoalteromonas sp. SM9913]
 gi|315014893|gb|ADT68231.1| response regulator [Pseudoalteromonas sp. SM9913]
          Length = 432

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 88/180 (48%), Gaps = 8/180 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             + ++     ++  L+  D L+ LLN   F+ +           ++ L++   DID+FK
Sbjct: 247 RDITKMKQYQAQLKDLTIKDPLTNLLNRRGFMETAKLALDECIKDSQHLTLTMIDIDHFK 306

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND FGH  GD V+  ++        +   + RLGGEEF   +              L+
Sbjct: 307 RINDQFGHEGGDSVLQSIAATFKSFCDSDDIIARLGGEEFCIVSPTKCVSTVVKTLAKLQ 366

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++++ + +SSG  +  TIS+G++    +   +  ++  AD ALY AK +GRN+ V F+
Sbjct: 367 DHLKDNPVQLSSGGQVSYTISSGVSSLTSESCSLQGLLRNADTALYNAKTTGRNQTVVFN 426


>gi|323978342|gb|EGB73428.1| GGDEF domain-containing protein [Escherichia coli TW10509]
          Length = 460

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 281 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 339 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 399 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 456


>gi|288941039|ref|YP_003443279.1| periplasmic/7TM domain sensor diguanylate cyclase [Allochromatium
           vinosum DSM 180]
 gi|288896411|gb|ADC62247.1| periplasmic/7TM domain sensor diguanylate cyclase [Allochromatium
           vinosum DSM 180]
          Length = 579

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 60/260 (23%), Positives = 113/260 (43%), Gaps = 18/260 (6%)

Query: 9   LSIWLCHEKNLESFSPHTFMIY-----FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63
           L+ W+     L  F     +++       +F     A ++         +GL P    + 
Sbjct: 310 LAFWVGTTMTLLIFVATLRVLWRGYRPARLFLLAQFAPLVGALLTLARALGLAP----DT 365

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-- 121
           + +E+   + +S+ + +L        ++ L     +  Q +  D L+GL N         
Sbjct: 366 LWIEHAFQMGVSLEV-MLFSLALAQRIELLRQEKQQAQQRAETDPLTGLFNREGLSRRVS 424

Query: 122 -LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEE 179
            L       +++  D+D FK +ND  GH  GD V+  +++++  +       V R+GG+E
Sbjct: 425 DLCDRRAPYALMVVDLDRFKPVNDQLGHEAGDAVLIAVAERMRALVRAEGDSVARIGGDE 484

Query: 180 FAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTII 237
           F     G + E +A ++A  L + +  + I   +G  + I  S GIA      + ++ ++
Sbjct: 485 FVLILRGMTHETDAGVVAAKLLESLATA-IPTPAG-EVRIGASIGIALSPADGQQLARLL 542

Query: 238 YRADQALYVAKKSGRNRVVC 257
             ADQA+Y AK+ GRNR   
Sbjct: 543 QVADQAMYRAKQDGRNRWHY 562


>gi|156976625|ref|YP_001447531.1| hypothetical protein VIBHAR_05399 [Vibrio harveyi ATCC BAA-1116]
 gi|156528219|gb|ABU73304.1| hypothetical protein VIBHAR_05399 [Vibrio harveyi ATCC BAA-1116]
          Length = 480

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 102/214 (47%), Gaps = 5/214 (2%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            I   +I +   Y      +   +L++ ++     L        ++L ++  ++ +L+  
Sbjct: 253 RILSRWIHVKTVYPAYLAPLAVFALIMAAMFHIFSLKRTVALRARQLTMANQQLFELTLT 312

Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ L N    I  L +       L+++ FDID FK IND FGH VGD+ I  +++   
Sbjct: 313 DPLTKLYNRRHLIERLATLSNVRRNLTVMVFDIDDFKSINDQFGHVVGDQAIIAVANTAR 372

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
            V    M + R+GGEEFA      S +EA +LA  +   +  S + +  G +I ++IS G
Sbjct: 373 TVIDERMTLARIGGEEFALVTASLSAEEAEVLARTICTQVHCSPVTL-DGQTISVSISLG 431

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            A     +   ++   ADQ +Y  K +G+NR V 
Sbjct: 432 CAYYPKFDEQPSL-QDADQLMYRGKANGKNRAVF 464


>gi|83643397|ref|YP_431832.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631440|gb|ABC27407.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 405

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 113/240 (47%), Gaps = 14/240 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE-NLSLVIISITISLLLGYISGSILKE 92
             ++FI  ++    + LF    T    + ++L+   L +  IS T+      ++   + +
Sbjct: 155 MVNLFIICLLAPMTLALFSAYSTQPGVIGFLLISFGLGMSWIS-TLPRHEYEVAVLSIIK 213

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDN 145
           L    N +++L+  D L+G+ N   F              N  +S++  DID+FK++ND 
Sbjct: 214 LSQQANYLTELTIQDGLTGVKNRRYFDQILSADLRRASRLNYPISLLLIDIDHFKRVNDR 273

Query: 146 FGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH +GD+ +   +  L   +      + R GGEEF     G   +EAA LA  LR  + 
Sbjct: 274 YGHLIGDECLVQTAQTLMRQLQRNSDVLARYGGEEFGIILPGVDAEEAAALAEKLRSAVA 333

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSDIE 262
              +   S P + +TIS G      KE ++   ++  AD+ALY AK  GRN V  +S +E
Sbjct: 334 ACAVWNLSDP-VSVTISIGGVSGVPKETMTPKQLLELADKALYQAKSYGRNCV-FWSSLE 391


>gi|75910072|ref|YP_324368.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Anabaena variabilis ATCC 29413]
 gi|75703797|gb|ABA23473.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Anabaena variabilis ATCC 29413]
          Length = 1021

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 12/190 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDY 138
            + + E      R+   +  D L+GL N   F+  L           N+  +++F D+D 
Sbjct: 573 ATDITERKNMEERLVYHAFYDDLTGLPNRVLFMDRLAQTINQAKESPNDLFAVLFLDLDR 632

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAN 197
           FK +ND+  H VGD+++   + +L         + RLGG+EF        S  +A  +A 
Sbjct: 633 FKVVNDSLSHLVGDQLLVSFAQRLQSCLQPEDTLARLGGDEFTILLSHIQSIDDATRIAE 692

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            + + +     N+S G  +  T+S GIA   +     + ++  AD ALY AK+ G+   +
Sbjct: 693 KIHQAL-KLPFNLS-GYEVFTTVSIGIALSSNDYVQAADLLRDADTALYCAKEQGKAWHI 750

Query: 257 CFSDIENNTC 266
            F     +  
Sbjct: 751 VFDSTMYDRA 760


>gi|78358348|ref|YP_389797.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78220753|gb|ABB40102.1| diguanylate cyclase (GGDEF domain) [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 476

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)

Query: 75  SITISLLLGYISGSILKEL-----FISYNRISQLSRIDCLSGLLNHSAFISS--LGSYNE 127
           +   +L +G++S  ++  L          RI  L+R D L+G  N         L +Y  
Sbjct: 286 NFMRTLAMGFVSTLVILALCVLAVNKYQARIEHLARTDPLTGAANRRELEERFDLAAYRA 345

Query: 128 -----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                  SI+  D+D FK++ND  GH  GD+V+A ++  +         + R GG+EF  
Sbjct: 346 SRDGIPFSILIIDLDGFKEVNDRLGHLAGDEVLASMARVIRGRLRPTDLLARWGGDEFII 405

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
              G +E+ A  LA  +   +        + P I +  S+G+A     + ++++  RAD 
Sbjct: 406 LLDG-NEESARALARRISAAV-------CAAPDIPVGFSSGVAAYRDSDDLTSLTRRADN 457

Query: 243 ALYVAKKSGRNRVVCFSDI 261
           A+Y AK  G + V+   D+
Sbjct: 458 AMYQAKARGGDCVMAAEDL 476


>gi|62289191|ref|YP_220984.1| sensory box protein [Brucella abortus bv. 1 str. 9-941]
 gi|82699128|ref|YP_413702.1| PAS domain-containing protein [Brucella melitensis biovar Abortus
           2308]
 gi|189023462|ref|YP_001934230.1| PAS-associated C-terminal domain protein [Brucella abortus S19]
 gi|254690514|ref|ZP_05153768.1| PAS-associated C-terminal domain protein [Brucella abortus bv. 6
           str. 870]
 gi|254696639|ref|ZP_05158467.1| PAS-associated C-terminal domain protein [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254731547|ref|ZP_05190125.1| PAS-associated C-terminal domain protein [Brucella abortus bv. 4
           str. 292]
 gi|260546486|ref|ZP_05822226.1| PAS-associated domain-containing protein [Brucella abortus NCTC
           8038]
 gi|62195323|gb|AAX73623.1| sensory box/GGDEF domain/EAL domain protein [Brucella abortus bv. 1
           str. 9-941]
 gi|82615229|emb|CAJ10176.1| PAS domain:GGDEF:PAS-associated C-terminal domain:PAC motif:EAL
           domain [Brucella melitensis biovar Abortus 2308]
 gi|189019034|gb|ACD71756.1| PAS-associated C-terminal domain protein [Brucella abortus S19]
 gi|260096593|gb|EEW80469.1| PAS-associated domain-containing protein [Brucella abortus NCTC
           8038]
          Length = 703

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFF 134
           L+G +    + E      R+  ++  D L+GL N + F   +GS  +        ++ + 
Sbjct: 249 LIGLV--EDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHVGSLLKKGSDCDPFALFYL 306

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK +ND+  H  GD+++  ++ +L  +     F+ RLGG+EFA      +  + A+
Sbjct: 307 DIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGTLAQIAM 366

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
            A+ +    ++    +  G +  +T S GIA+   H +    ++  AD ALY +K  GR 
Sbjct: 367 FADRVLSAFQD--PFVLGGNAEFVTCSMGIAQAPLHGDNPDVLMRNADLALYASKSGGRR 424

Query: 254 RVVCFSD 260
               + D
Sbjct: 425 TFRFYQD 431


>gi|87120483|ref|ZP_01076377.1| diguanylate cyclase (GGDEF domain) [Marinomonas sp. MED121]
 gi|86164126|gb|EAQ65397.1| diguanylate cyclase (GGDEF domain) [Marinomonas sp. MED121]
          Length = 363

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 110/243 (45%), Gaps = 18/243 (7%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           H  + + S+  +IF+    +  +     + ++P    + I+V NL+ +I    IS     
Sbjct: 129 HWRLPFLSVSVAIFMLCYKYAGS---SQVLMSP---EQQIIVRNLTFIITLAAISGATAL 182

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDID 137
           + G     L  + + + +L+ +D L+G+ N    ++   +         E       D+D
Sbjct: 183 VVGR----LRRANSDLRKLAELDELTGIANRRKVLADAVNIYADAVINMESCVYAIVDLD 238

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK+IND +GH  GD V+  ++ ++         +GR GGEEF      +  +      +
Sbjct: 239 HFKKINDTYGHEAGDVVLKSVAAKMDETIRPGDKLGRYGGEEFVVIMPDTDIEHGLQEMD 298

Query: 198 DLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            LR+ + +  I    G  + +T+S G+ A          I+  AD ALY AK+ GRNRV 
Sbjct: 299 RLRQEVSDMLIETEMGVVVPVTLSVGLSAISLETNRYEEILAEADSALYSAKREGRNRVS 358

Query: 257 CFS 259
            ++
Sbjct: 359 AYT 361


>gi|126174964|ref|YP_001051113.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella baltica OS155]
 gi|125998169|gb|ABN62244.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS155]
          Length = 1419

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 9/185 (4%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQIND 144
            S +         + +L+  D L+GL N S    +L +   +    +++  D+D FK+IND
Sbjct: 971  SDISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLSNLVNREIAHALMVLDLDNFKRIND 1030

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKII 203
            + GH +GD ++  ++ ++  +      + RLGG+EFA      S    +A +AN +   I
Sbjct: 1031 SLGHQIGDTLLKLVAARIKSLLPKNTSIYRLGGDEFAIVLDKNSDISASAAIANRI---I 1087

Query: 204  ENSQINIS-SGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDI 261
            E  +     S   + + +S GI      E     ++ +AD A+Y AK +G N    +S+ 
Sbjct: 1088 EGLKPAFEVSNEQLVLGLSIGIVLFPEDEQSEQALLRKADIAMYHAKSAGGNCYQFYSES 1147

Query: 262  ENNTC 266
             N   
Sbjct: 1148 LNQHA 1152


>gi|117926292|ref|YP_866909.1| diguanylate cyclase [Magnetococcus sp. MC-1]
 gi|117610048|gb|ABK45503.1| diguanylate cyclase [Magnetococcus sp. MC-1]
          Length = 428

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 9/173 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           +++ L  + NR+   S  D L+GL N   F       +S    Y   +++   D++ FK 
Sbjct: 255 LMQNLNSAQNRLRDQSERDELTGLFNRRFFNRTFAAELSRAKRYKHSVALFMLDLNGFKP 314

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH  GD ++  L  ++         + R+GG+EF   A     Q A+     LR 
Sbjct: 315 INDTYGHGAGDAILQALGREMQNKLRDNDIIARVGGDEFVVLAPEIGSQGASQFEEKLRS 374

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           +IE + I +  G  + +  S G+A    H +    ++  AD+A+Y  K+  + 
Sbjct: 375 LIEQTTI-VYEGEQLSVGTSIGVALYPDHGDEAKQLLDFADEAMYADKRRRKG 426


>gi|331652330|ref|ZP_08353349.1| protein gmr [Escherichia coli M718]
 gi|331050608|gb|EGI22666.1| protein gmr [Escherichia coli M718]
          Length = 661

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|265994160|ref|ZP_06106717.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 3
           str. Ether]
 gi|262765141|gb|EEZ11062.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 3
           str. Ether]
          Length = 709

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFF 134
           L+G +    + E      R+  ++  D L+GL N + F   +GS  +        ++ + 
Sbjct: 255 LIGLV--EDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHVGSLLKKGSDCDPFALFYL 312

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK +ND+  H  GD+++  ++ +L  +     F+ RLGG+EFA      +  + A+
Sbjct: 313 DIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGTLAQIAM 372

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
            A+ +    ++    +  G +  +T S GIA+   H +    ++  AD ALY +K  GR 
Sbjct: 373 FADRVLSAFQD--PFVLGGNAEFVTCSMGIAQAPLHGDNPDVLMRNADLALYASKSGGRR 430

Query: 254 RVVCFSD 260
               + D
Sbjct: 431 TFRFYQD 437


>gi|260771498|ref|ZP_05880422.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Vibrio furnissii CIP 102972]
 gi|260613463|gb|EEX38658.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Vibrio furnissii CIP 102972]
          Length = 1097

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 13/208 (6%)

Query: 69  LSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-GSYN 126
           + L I+ + ++  + +I     + E     N I QL+  D L+ L N    +  L  + N
Sbjct: 636 IELGIVEVQMAGEVNFIGVVRDITERKQRENEIHQLAFYDPLTLLPNRRLLLDRLTEAIN 695

Query: 127 EKL------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
             +      ++ F D+D FK +ND+ GH  GD ++  ++++LV        V RLGG+EF
Sbjct: 696 HSVRTRNFSALFFLDLDNFKNLNDSAGHNKGDLLLGQVAERLVNSVRQGDTVARLGGDEF 755

Query: 181 AAAALGSSEQ--EAAILANDL-RKIIENSQINIS-SGPSIHITISAGIAER-CHKEPIST 235
              A   S +   AA  A  L +KI+ N     +  G + + + S G+        P   
Sbjct: 756 VIIASDLSHEPTLAANQAERLAQKIVSNLTREYNLDGLTYNSSASIGVTLFNSENLPKED 815

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDIEN 263
           ++ +AD A+Y AK +GRN V  F     
Sbjct: 816 LLKQADMAMYKAKYAGRNGVQFFDPQMQ 843


>gi|254792876|ref|YP_003077713.1| modulator of Rnase II stability [Escherichia coli O157:H7 str.
           TW14359]
 gi|254592276|gb|ACT71637.1| modulator of Rnase II stability [Escherichia coli O157:H7 str.
           TW14359]
          Length = 525

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|190891799|ref|YP_001978341.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190697078|gb|ACE91163.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 753

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 58/218 (26%), Positives = 102/218 (46%), Gaps = 24/218 (11%)

Query: 70  SLVIISITISLL-LGYISGSILK----------ELFISYNRISQLSRIDCLSGLLNHSAF 118
           SL+ + +   ++ +G+++ S  K          +L  +  R+  LS  D L+GL N   F
Sbjct: 277 SLLALCVVAPIVWVGFLTKSRQKTIEKLRLHKSKLVRARQRLEHLSLHDALTGLPNRR-F 335

Query: 119 ISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           +  + S        ++L ++  D+D FK+IND  GH  GD V+   + +L  + G     
Sbjct: 336 VDQMISQPPRPDPQDRLILIHIDLDRFKEINDTKGHAGGDMVLQTTASRLADLTGPNDVA 395

Query: 173 GRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERC 228
            R+GG+EF  A+  +  + +AA LA  +   ++ +      G    +  S G+A   E  
Sbjct: 396 ARIGGDEFVVASWSTDPEPKAAELARQIVDALQQTIF--IDGAGYVVGASVGVAWETESA 453

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
               +  ++  AD ALY AKK+GR R   F++   +  
Sbjct: 454 RDRDLGQLLLNADLALYQAKKAGRGRAAVFTEELRSAA 491


>gi|254229682|ref|ZP_04923092.1| fog: ggdef domain containing protein [Vibrio sp. Ex25]
 gi|262395233|ref|YP_003287087.1| sensory box/GGDEF family protein [Vibrio sp. Ex25]
 gi|151937803|gb|EDN56651.1| fog: ggdef domain containing protein [Vibrio sp. Ex25]
 gi|262338827|gb|ACY52622.1| sensory box/GGDEF family protein [Vibrio sp. Ex25]
          Length = 582

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 18/192 (9%)

Query: 84  YISGSILKELFISYNRISQ-------LSRIDCLSGLLNHSAFISSLG-------SYNEKL 129
            I    + E +++  ++ +       LS +D L+ + N   F   L             L
Sbjct: 386 LIMARDISERYLAEQKLERANLELEKLSFMDSLTQVSNRRRFDEQLQVLWYHHAREKLPL 445

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSS 188
           +I+  DID+FK  ND +GH  GD+ +  ++     V+  +   V R GGEEF      ++
Sbjct: 446 TIMLCDIDFFKDYNDCYGHQQGDEALVSVATVFTKVINRSSDCVARYGGEEFGFILPNTT 505

Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAER--CHKEPISTIIYRADQALY 245
            + A+ +A  + + I    +   S   S  +T+S G+      H +     I  AD ALY
Sbjct: 506 TEGASNVAQRIHEQIRQLDMEHDSSEASERLTVSIGLVSYIPQHGDEPEMGIAMADSALY 565

Query: 246 VAKKSGRNRVVC 257
            AK  GRNR   
Sbjct: 566 QAKADGRNRTCI 577


>gi|297538783|ref|YP_003674552.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera sp. 301]
 gi|297258130|gb|ADI29975.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera sp. 301]
          Length = 710

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 11/177 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
           ++I   ++ D L+GL N       L         Y  K+++ F D+D FK IND+ GH V
Sbjct: 275 HKIEHQAKHDSLTGLPNRYMLNDRLQQSINFADRYKNKMAVAFVDLDQFKLINDSMGHEV 334

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQIN 209
           GD+++  +S +L         V RLGG+EF        +  +  I    +   +      
Sbjct: 335 GDQLLLIMSKRLSSCIREVDTVVRLGGDEFVILLTNIENVNDVLISMQRVLTAVAA--PC 392

Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           + +     +T S GI+         +T++  AD A+Y AKK+GRN    ++   N  
Sbjct: 393 VINELDYVVTSSIGISIYPDDGIEPNTLLKNADTAMYKAKKAGRNNYQIYTQELNEA 449


>gi|256158917|ref|ZP_05456764.1| diguanylate cyclase GGDEF domain-containing protein [Brucella ceti
           M490/95/1]
 gi|256254288|ref|ZP_05459824.1| diguanylate cyclase GGDEF domain-containing protein [Brucella ceti
           B1/94]
          Length = 703

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFF 134
           L+G +    + E      R+  ++  D L+GL N + F   +GS  +        ++ + 
Sbjct: 249 LIGLV--EDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHVGSLLKKGSDCDPFALFYL 306

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK +ND+  H  GD+++  ++ +L  +     F+ RLGG+EFA      +  + A+
Sbjct: 307 DIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGTLAQIAM 366

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
            A+ +    ++    +  G +  +T S GIA+   H +    ++  AD ALY +K  GR 
Sbjct: 367 FADRVLSAFQD--PFVLGGNAEFVTCSMGIAQAPLHGDNPDVLMRNADLALYASKSGGRR 424

Query: 254 RVVCFSD 260
               + D
Sbjct: 425 TFRFYQD 431


>gi|237814680|ref|ZP_04593678.1| diguanylate cyclase (GGDEF) domain-containing protein [Brucella
           abortus str. 2308 A]
 gi|260756073|ref|ZP_05868421.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella abortus bv. 6 str. 870]
 gi|260759297|ref|ZP_05871645.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella abortus bv. 4 str. 292]
 gi|260761019|ref|ZP_05873362.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella abortus bv. 2 str. 86/8/59]
 gi|237789517|gb|EEP63727.1| diguanylate cyclase (GGDEF) domain-containing protein [Brucella
           abortus str. 2308 A]
 gi|260669615|gb|EEX56555.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella abortus bv. 4 str. 292]
 gi|260671451|gb|EEX58272.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676181|gb|EEX63002.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella abortus bv. 6 str. 870]
          Length = 709

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFF 134
           L+G +    + E      R+  ++  D L+GL N + F   +GS  +        ++ + 
Sbjct: 255 LIGLV--EDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHVGSLLKKGSDCDPFALFYL 312

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK +ND+  H  GD+++  ++ +L  +     F+ RLGG+EFA      +  + A+
Sbjct: 313 DIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGTLAQIAM 372

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
            A+ +    ++    +  G +  +T S GIA+   H +    ++  AD ALY +K  GR 
Sbjct: 373 FADRVLSAFQD--PFVLGGNAEFVTCSMGIAQAPLHGDNPDVLMRNADLALYASKSGGRR 430

Query: 254 RVVCFSD 260
               + D
Sbjct: 431 TFRFYQD 437


>gi|152985233|ref|YP_001345645.1| hypothetical protein PSPA7_0249 [Pseudomonas aeruginosa PA7]
 gi|150960391|gb|ABR82416.1| hypothetical protein PSPA7_0249 [Pseudomonas aeruginosa PA7]
          Length = 275

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 11/178 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
             ++++L ++   + + S  D L+GL N    +  L         + +   +   D+D+F
Sbjct: 86  QQMMRDLNLA---LKEASIRDPLTGLPNRRMLLERLREENERSQRHGQSYVLAMLDVDFF 142

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQ+ND +GH  GD+V+  ++  +          GR GGEEF      +  Q+A  +   +
Sbjct: 143 KQVNDTWGHDSGDRVLVEIARAMESELREYDLCGRWGGEEFLLLLPQTRLQDAGPVLERV 202

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R  +    + + +  ++ +T S G+ E    E  S  + RAD AL  AK+SGR++ V 
Sbjct: 203 RDSVRTLAVRVGT-EALSVTASVGVTEHRIGETYSQTVNRADAALLDAKRSGRDKCVF 259


>gi|84515270|ref|ZP_01002632.1| two component diguanylate cyclase [Loktanella vestfoldensis SKA53]
 gi|84510553|gb|EAQ07008.1| two component diguanylate cyclase [Loktanella vestfoldensis SKA53]
          Length = 442

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q +  D L+GL N       L   +E+       L+++  DID+FK IND +GH  GD+V
Sbjct: 270 QAAVTDPLTGLFNRRYADHHLARMSEQSAVAGSALAVMMIDIDHFKAINDTYGHAAGDRV 329

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG- 213
           +  L+ +L         V R+GGEEF  A   +S ++A   A+ LR+++  +  ++    
Sbjct: 330 LVALAARLRDNLRAVDLVARIGGEEFLIAMPRTSARQAQGAADRLRRLVSQTPFDLGEAY 389

Query: 214 PSIHITISAGIAERCHK---EPISTII-YRADQALYVAKKSGRNRVVC 257
             I +T+S G+A        +P + ++   AD ALY AK +GR+ V  
Sbjct: 390 APIPVTVSVGVALSDEAGQTQPDTHLMCDLADAALYRAKSAGRDCVAM 437


>gi|330980264|gb|EGH78405.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 482

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 14/190 (7%)

Query: 83  GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           G ISG++L    ++  +     +S  +  D L+GL+N S F   L               
Sbjct: 10  GVISGAVLVLHDMTQEQQYIADLSWQAAHDPLTGLVNRSEFERRLQRVLDEDCGQGRSHC 69

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F D+D FK +ND  GH  GD+++  L   L         + RLGG+EF    +    +
Sbjct: 70  LMFLDLDQFKLVNDTGGHAAGDELLRQLCRALPQGLRDGDTLARLGGDEFGVLLVDCPAE 129

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
            A  +A  LR+ ++     +  G     T+S G+         +   +  AD A Y+AK+
Sbjct: 130 TALDIAEALREAVQRLHF-MWKGRPFMATVSIGLVHLGDTPASLEGSLSAADMACYMAKE 188

Query: 250 SGRNRVVCFS 259
            GRNRV  +S
Sbjct: 189 RGRNRVQAYS 198


>gi|329902982|ref|ZP_08273326.1| EAL domain [Oxalobacteraceae bacterium IMCC9480]
 gi|327548534|gb|EGF33198.1| EAL domain [Oxalobacteraceae bacterium IMCC9480]
          Length = 675

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 96/239 (40%), Gaps = 33/239 (13%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112
           + +  F+ + Y   +  +L+ +   I + LG +      E   +  ++   +  D L+ L
Sbjct: 182 VAVLEFFSMAYQEPDE-ALLRLMAQIGIQLGRVV-----ERERTREKLMHDALHDPLTRL 235

Query: 113 LNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
            N   F+  L             +  ++F D+D FK +ND  GH  GD++I   +++L  
Sbjct: 236 GNRKLFLDRLQQAQLRARRVPGYQFCVLFVDLDRFKGVNDGLGHQAGDQLIIATANRLSA 295

Query: 165 VFGT---------------PMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQI 208
                                 + R+GG+EF       + ++    +A  L   + ++  
Sbjct: 296 SLRQTDLVSRGAIDQSGGGGDILARMGGDEFTILLDNINSEQVPVRVAERLMSAMADA-- 353

Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            +  G  + +T S GIA   +  + +  ++  AD A+Y AK+ GR R V F        
Sbjct: 354 FVLDGQQVIVTASIGIALNKNGYDDVQDMLRDADIAMYHAKQQGRARWVMFDSAMQEKA 412


>gi|301513154|ref|ZP_07238391.1| WspR [Acinetobacter baumannii AB058]
          Length = 336

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL     ++S LS+ D L+GL N      +L         +   L+I+  DID+FK  ND
Sbjct: 149 ELMQQAQQLSLLSQQDALTGLANRRYLDETLDNEWRRALRHETPLTIMMVDIDFFKPYND 208

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           + GH  GD+ +  ++  +  +   +   V R GGEEF      ++ Q+A I A  L   I
Sbjct: 209 SLGHLKGDQCLKDIATAISSIAARSGDLVARYGGEEFLLLFPMTNAQQAKIQAERLMNAI 268

Query: 204 ENSQINIS-SGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   I    S  S ++TIS G+A       + IS  + RAD ALY AK +GRN+   
Sbjct: 269 KKIAIVHPCSSVSPYVTISVGVATTIPRLNDSISAFVSRADHALYQAKTNGRNQYQI 325


>gi|261221443|ref|ZP_05935724.1| diguanylate cyclase/phosphodiesterase [Brucella ceti B1/94]
 gi|265997405|ref|ZP_06109962.1| diguanylate cyclase/phosphodiesterase [Brucella ceti M490/95/1]
 gi|260920027|gb|EEX86680.1| diguanylate cyclase/phosphodiesterase [Brucella ceti B1/94]
 gi|262551873|gb|EEZ07863.1| diguanylate cyclase/phosphodiesterase [Brucella ceti M490/95/1]
          Length = 709

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFF 134
           L+G +    + E      R+  ++  D L+GL N + F   +GS  +        ++ + 
Sbjct: 255 LIGLV--EDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHVGSLLKKGSDCDPFALFYL 312

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK +ND+  H  GD+++  ++ +L  +     F+ RLGG+EFA      +  + A+
Sbjct: 313 DIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGTLAQIAM 372

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
            A+ +    ++    +  G +  +T S GIA+   H +    ++  AD ALY +K  GR 
Sbjct: 373 FADRVLSAFQD--PFVLGGNAEFVTCSMGIAQAPLHGDNPDVLMRNADLALYASKSGGRR 430

Query: 254 RVVCFSD 260
               + D
Sbjct: 431 TFRFYQD 437


>gi|225851746|ref|YP_002731979.1| diguanylate cyclase GGDEF domain-containing protein [Brucella
           melitensis ATCC 23457]
 gi|254707098|ref|ZP_05168926.1| diguanylate cyclase GGDEF domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|254709361|ref|ZP_05171172.1| diguanylate cyclase GGDEF domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|254713218|ref|ZP_05175029.1| diguanylate cyclase GGDEF domain-containing protein [Brucella ceti
           M644/93/1]
 gi|254716428|ref|ZP_05178239.1| diguanylate cyclase GGDEF domain-containing protein [Brucella ceti
           M13/05/1]
 gi|256030884|ref|ZP_05444498.1| diguanylate cyclase GGDEF domain-containing protein [Brucella
           pinnipedialis M292/94/1]
 gi|256368680|ref|YP_003106186.1| sensory box/GGDEF domain/EAL domain protein [Brucella microti CCM
           4915]
 gi|260169786|ref|ZP_05756597.1| sensory box/GGDEF domain/EAL domain protein [Brucella sp. F5/99]
 gi|261759331|ref|ZP_06003040.1| PAS-associated C-terminal domain-containing protein [Brucella sp.
           F5/99]
 gi|294851616|ref|ZP_06792289.1| diguanylate cyclase GGDEF domain-containing protein [Brucella sp.
           NVSL 07-0026]
 gi|225640111|gb|ACO00025.1| diguanylate cyclase GGDEF domain-containing protein [Brucella
           melitensis ATCC 23457]
 gi|255998838|gb|ACU47237.1| sensory box/GGDEF domain/EAL domain protein [Brucella microti CCM
           4915]
 gi|261739315|gb|EEY27311.1| PAS-associated C-terminal domain-containing protein [Brucella sp.
           F5/99]
 gi|294820205|gb|EFG37204.1| diguanylate cyclase GGDEF domain-containing protein [Brucella sp.
           NVSL 07-0026]
          Length = 703

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFF 134
           L+G +    + E      R+  ++  D L+GL N + F   +GS  +        ++ + 
Sbjct: 249 LIGLV--EDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHVGSLLKKGSDCDPFALFYL 306

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK +ND+  H  GD+++  ++ +L  +     F+ RLGG+EFA      +  + A+
Sbjct: 307 DIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGTLAQIAM 366

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
            A+ +    ++    +  G +  +T S GIA+   H +    ++  AD ALY +K  GR 
Sbjct: 367 FADRVLSAFQD--PFVLGGNAEFVTCSMGIAQAPLHGDNPDVLMRNADLALYASKSGGRR 424

Query: 254 RVVCFSD 260
               + D
Sbjct: 425 TFRFYQD 431


>gi|89108333|ref|AP_002113.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           W3110]
 gi|254161548|ref|YP_003044656.1| putative diguanylate cyclase [Escherichia coli B str. REL606]
 gi|85674988|dbj|BAA15155.2| predicted diguanylate cyclase [Escherichia coli str. K12 substr.
           W3110]
 gi|253973449|gb|ACT39120.1| predicted diguanylate cyclase [Escherichia coli B str. REL606]
 gi|253977660|gb|ACT43330.1| predicted diguanylate cyclase [Escherichia coli BL21(DE3)]
          Length = 347

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 168 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 225

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 226 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 285

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 286 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 343


>gi|59711596|ref|YP_204372.1| diguanylate cyclase (GGDEF), inhibitor of flagellar motility
           [Vibrio fischeri ES114]
 gi|59479697|gb|AAW85484.1| diguanylate cyclase (GGDEF), inhibitor of flagellar motility
           [Vibrio fischeri ES114]
          Length = 631

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 62/188 (32%), Positives = 93/188 (49%), Gaps = 17/188 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKL-------SIVFFDI 136
           S   +       N + +LS  D L+   N   F +        ++L        +   DI
Sbjct: 449 SFVDITARKELENCLRELSEKDMLTQCWNRRKFEAEFSKLTNKQRLTPEVKMSCLAIIDI 508

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK+IND +GH VGDKVI  ++  L     +  FV R+GGEEFA     +S +EA ++ 
Sbjct: 509 DYFKRINDQYGHDVGDKVIKNVARILQTESRSIDFVARIGGEEFAILLPNTSLKEAEVIL 568

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           N LR  I     +++ G S  +T+S G+ + C  +       RAD ALY +K +GRN++ 
Sbjct: 569 NRLRVAI-----HLADG-SQSVTVSGGVTDIC--DCGEATYKRADLALYESKTAGRNQIS 620

Query: 257 CFSDIENN 264
           CF   E +
Sbjct: 621 CFPSSEMD 628


>gi|302555749|ref|ZP_07308091.1| integral membrane phosphodiesterase [Streptomyces viridochromogenes
           DSM 40736]
 gi|302473367|gb|EFL36460.1| integral membrane phosphodiesterase [Streptomyces viridochromogenes
           DSM 40736]
          Length = 776

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 84/193 (43%), Gaps = 14/193 (7%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDI 136
            +   + +      ++   +  D L+ L N + F   +           +  ++++F D+
Sbjct: 538 FNTRDVTDRARLQAQLRHSAEHDPLTDLPNRALFTQRVEQALADRGGNDDRAIAVLFVDL 597

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK +ND +GH  GD+++   + +L           RLGG+EFAA  +    ++ +   
Sbjct: 598 DDFKAVNDRYGHQTGDELLVRTAHRLKQTVR-NDTAARLGGDEFAALVVDDGARDDSTRE 656

Query: 197 NDLRKIIENSQINIS-----SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
             L ++    +I +S      G  I +T S GIA    +     ++  AD A Y AK  G
Sbjct: 657 EHLLELAHRLRITLSQPCTIEGSDIKVTASIGIAFAEPEIAAGELLRNADLATYRAKAWG 716

Query: 252 RNRVVCFSDIENN 264
           ++RV  ++    +
Sbjct: 717 KDRVELYAPHMQD 729


>gi|326776418|ref|ZP_08235683.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces cf. griseus XylebKG-1]
 gi|326656751|gb|EGE41597.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces cf. griseus XylebKG-1]
          Length = 998

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 16/194 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEK-----LSIVFFDI 136
            ++   + E      ++   +  D L+ L N + F + +       +      +++F D+
Sbjct: 514 LLNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTARVRQALGGRRSGDPGTAVLFIDL 573

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-------E 189
           D FK +ND  GH  GD+++     +L           RLGG+EFAA  +G         E
Sbjct: 574 DGFKAVNDTIGHQAGDELLIQAGRRLQDSVRAGDTAARLGGDEFAALIVGDGTRDQGARE 633

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            +   +A+ LR  +  SQ        + +  S G+A        + ++  AD A+Y AK 
Sbjct: 634 YQVHEIADRLRLTL--SQPYRIGPSEVRVAASIGVAFAEPAISPTDLMRNADLAMYRAKA 691

Query: 250 SGRNRVVCFSDIEN 263
            G++RV  ++    
Sbjct: 692 GGKDRVELYAPQMQ 705


>gi|284050982|ref|ZP_06381192.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira platensis str.
           Paraca]
          Length = 592

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 61/270 (22%), Positives = 116/270 (42%), Gaps = 21/270 (7%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV 72
           +C E           +I+ S    +F     F A    +   +T  + +E +LV   + +
Sbjct: 67  VCKELKNNQTLAKVPVIFLSALNDVFDKVKAFGAGGVDY---ITKPFQMEEVLVRVQNHL 123

Query: 73  II------SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
           ++       + ++  L        ++L I+  ++ +++  D L+ L N + F+  +    
Sbjct: 124 MLKEAEKKILELNTELEARVKERTQQLQIANYKLLEMALHDPLTKLPNRALFMDKISLVI 183

Query: 123 ----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                  N   +++F D D FK +ND+ GH VGD+++  + D++  +      + RLGG+
Sbjct: 184 KSVKEGNNHGFAVLFMDCDRFKVVNDSLGHTVGDELLIAIGDRIQKILKNNDLLSRLGGD 243

Query: 179 EFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTI 236
           EFA      +E E    LAN + +++ +    I S   I I +S G+       E    +
Sbjct: 244 EFAIIVHDVNEIEPVRNLANSILEVM-SCPFQIYS-REIFINMSIGVVLSNRDYEQPEHL 301

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           +  AD A+Y AK  GR +   F    +   
Sbjct: 302 LRDADTAMYRAKALGRGQYHIFDPAMHKEA 331


>gi|225626750|ref|ZP_03784789.1| diguanylate cyclase GGDEF domain-containing protein [Brucella ceti
           str. Cudo]
 gi|261218214|ref|ZP_05932495.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella ceti M13/05/1]
 gi|261314571|ref|ZP_05953768.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella pinnipedialis M163/99/10]
 gi|261316873|ref|ZP_05956070.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella pinnipedialis B2/94]
 gi|261320938|ref|ZP_05960135.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella ceti M644/93/1]
 gi|265987943|ref|ZP_06100500.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella pinnipedialis M292/94/1]
 gi|265999654|ref|ZP_05467272.2| PAS-associated C-terminal domain-containing protein [Brucella
           melitensis bv. 2 str. 63/9]
 gi|225618407|gb|EEH15450.1| diguanylate cyclase GGDEF domain-containing protein [Brucella ceti
           str. Cudo]
 gi|260923303|gb|EEX89871.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella ceti M13/05/1]
 gi|261293628|gb|EEX97124.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella ceti M644/93/1]
 gi|261296096|gb|EEX99592.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella pinnipedialis B2/94]
 gi|261303597|gb|EEY07094.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella pinnipedialis M163/99/10]
 gi|263095150|gb|EEZ18819.1| PAS-associated C-terminal domain-containing protein [Brucella
           melitensis bv. 2 str. 63/9]
 gi|264660140|gb|EEZ30401.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella pinnipedialis M292/94/1]
          Length = 709

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFF 134
           L+G +    + E      R+  ++  D L+GL N + F   +GS  +        ++ + 
Sbjct: 255 LIGLV--EDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHVGSLLKKGSDCDPFALFYL 312

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK +ND+  H  GD+++  ++ +L  +     F+ RLGG+EFA      +  + A+
Sbjct: 313 DIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGTLAQIAM 372

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
            A+ +    ++    +  G +  +T S GIA+   H +    ++  AD ALY +K  GR 
Sbjct: 373 FADRVLSAFQD--PFVLGGNAEFVTCSMGIAQAPLHGDNPDVLMRNADLALYASKSGGRR 430

Query: 254 RVVCFSD 260
               + D
Sbjct: 431 TFRFYQD 437


>gi|82544260|ref|YP_408207.1| RNase II stability modulator [Shigella boydii Sb227]
 gi|307137927|ref|ZP_07497283.1| RNase II stability modulator [Escherichia coli H736]
 gi|331641849|ref|ZP_08342984.1| protein gmr [Escherichia coli H736]
 gi|81245671|gb|ABB66379.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|331038647|gb|EGI10867.1| protein gmr [Escherichia coli H736]
          Length = 661

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|327480582|gb|AEA83892.1| sensory box protein [Pseudomonas stutzeri DSM 4166]
          Length = 886

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 13/213 (6%)

Query: 64  ILVENLSLVIISITISLLLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  E L++  +      +  Y++  + + +   +  RI  L+  D L+GL N    +  L
Sbjct: 406 IFPEWLTISAVRNVHGEVTHYVAAFTDITDRKAAEERIHNLAFYDPLTGLPNRRLLLDRL 465

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     N+  +++F D+D FK IND  GH  GD+V+   +++L         V RL
Sbjct: 466 HQAMAASRRSNQLGALMFIDLDNFKNINDLHGHQTGDQVLRVAAERLHAEVRASDTVARL 525

Query: 176 GGEEFAAAA--LGSSEQEAAILANDLRKIIENSQINISSGPSIHI--TISAGIAERCHKE 231
           GG+EF      LG     AA  A  +   + NS         + +  + S G+     + 
Sbjct: 526 GGDEFVVMLENLGDDPLRAAAQAEHIGMKLLNSLDRSYRLNELGLYSSASIGVVLFGGEA 585

Query: 232 -PISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                ++ RAD ++Y AK SG+N +  F     
Sbjct: 586 CSSDELMKRADMSMYEAKISGKNALRFFDPRMQ 618


>gi|313499625|gb|ADR60991.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas putida BIRD-1]
          Length = 562

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 89/208 (42%), Gaps = 20/208 (9%)

Query: 70  SLVIISITISLLLGYISGSILK---------ELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           SL  +  T+  L+  ++G + K         E     + +      D L+GL N +    
Sbjct: 85  SLYWVDSTMVPLVDPLTGQVRKYVSIRFDVTEKRQLLHTLQWRVGHDVLTGLPNRAYLSD 144

Query: 121 SL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L             L++   D+D FK +ND +GH VGD ++  ++ +L  +      V 
Sbjct: 145 LLNQALAYSRREGISLAVCMLDLDGFKAVNDGYGHAVGDLLLVEVAQRLKSILRGGDAVA 204

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERC-HKE 231
           RL G+EF        ++     A  L++++       +    ++ ++ S G+       E
Sbjct: 205 RLSGDEFVLTLRDVDDEHQLHAA--LQRVLRALAAPCVVREHTLSLSASIGVTLYPQDDE 262

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
              T++  ADQA+YVAK+ GRNR   F 
Sbjct: 263 DADTLVRHADQAMYVAKQRGRNRYHLFD 290


>gi|293414618|ref|ZP_06657267.1| hypothetical protein ECDG_01181 [Escherichia coli B185]
 gi|291434676|gb|EFF07649.1| hypothetical protein ECDG_01181 [Escherichia coli B185]
          Length = 661

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|256046006|ref|ZP_05448878.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|260563286|ref|ZP_05833772.1| PAS domain-containing protein [Brucella melitensis bv. 1 str. 16M]
 gi|260153302|gb|EEW88394.1| PAS domain-containing protein [Brucella melitensis bv. 1 str. 16M]
          Length = 703

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFF 134
           L+G +    + E      R+  ++  D L+GL N + F   +GS  +        ++ + 
Sbjct: 249 LIGLV--EDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHVGSLLKKGSDCDPFALFYL 306

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK +ND+  H  GD+++  ++ +L  +     F+ RLGG+EFA      +  + A+
Sbjct: 307 DIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGTLAQIAM 366

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
            A+ +    ++    +  G +  +T S GIA+   H +    ++  AD ALY +K  GR 
Sbjct: 367 FADRVLSAFQD--PFVLGGNAEFVTCSMGIAQAPLHGDNPDVLMRNADLALYASKSGGRR 424

Query: 254 RVVCFSD 260
               + D
Sbjct: 425 TFRFYQD 431


>gi|269836060|ref|YP_003318288.1| diguanylate cyclase with PAS/PAC sensor [Sphaerobacter thermophilus
           DSM 20745]
 gi|269785323|gb|ACZ37466.1| diguanylate cyclase with PAS/PAC sensor [Sphaerobacter thermophilus
           DSM 20745]
          Length = 610

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 77/179 (43%), Gaps = 8/179 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFK 140
             + E      ++   +  D L+GL N + F+                 ++VF D+D FK
Sbjct: 419 RDICERKELEAQLRHQAFHDPLTGLPNRTLFMHRVDLAFAEAERNGRTAALVFIDLDDFK 478

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND FGH VGD ++  +  +L           RLGG+EFA       E  A  +A   R
Sbjct: 479 SVNDTFGHEVGDLLLVKVGQRLAATLRDGDIAARLGGDEFAVLF-DDVESHADAVAAANR 537

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +   SQ   ++G    +T S G+A          ++ RAD A+Y AK  GR  +  ++
Sbjct: 538 LLAALSQPIRAAGRDFTVTPSIGLAVHNPGISPREMLRRADHAMYHAKARGRGCLEIYT 596


>gi|255101387|ref|ZP_05330364.1| putative signaling protein [Clostridium difficile QCD-63q42]
          Length = 391

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 73/287 (25%), Positives = 118/287 (41%), Gaps = 35/287 (12%)

Query: 5   LKDFLSIWLCHEKNLESF-----SPHTFMIYFSIFFSI--FIATVIFIANIFLFYIGLTP 57
              F  +W C    L+       S  ++++  +  FS+  F  +VI     FLF     P
Sbjct: 107 YVTFFCLWGCVITLLDQLGGNDLSVFSYIMLAAAAFSVLKFGESVIVFGGCFLFLNLFLP 166

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELF----------ISYNRISQLSR-- 105
             G++ I     S ++ +  I+ L  ++S  + +               Y  IS ++   
Sbjct: 167 --GIQTIPGNEFSNIVNTFFITSLAIFVSTMLYRNRVFTYYDKLLISQQYEEISHINNLL 224

Query: 106 -----IDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
                 D L+ + N       L          E ++ +  DIDYFKQ NDN+GH  GD  
Sbjct: 225 NDKVMTDDLTKMNNRRYLEDILQKKLISHANQEPITGMMIDIDYFKQFNDNYGHQKGDYC 284

Query: 155 IAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  ++  ++           R GGEEF       +E EA + +  LRKIIE         
Sbjct: 285 LQNIAKVILDFTSSENEHAIRYGGEEFFICIFNCNEAEAKLKSECLRKIIECCNFERDDV 344

Query: 214 PSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCF 258
           P   +T+S G+  +  ++ I  +  I   D+ALY AK+ GRN V  +
Sbjct: 345 PLKCVTVSIGVYTKKIEKTITLNEFISNCDKALYTAKEQGRNCVAFY 391


>gi|156935782|ref|YP_001439698.1| hypothetical protein ESA_03652 [Cronobacter sakazakii ATCC BAA-894]
 gi|156534036|gb|ABU78862.1| hypothetical protein ESA_03652 [Cronobacter sakazakii ATCC BAA-894]
          Length = 698

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 102/234 (43%), Gaps = 13/234 (5%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRI 100
           F  +    ++G+   +    + +  L+++ IS+ +S+    +      +   L  +   +
Sbjct: 198 FPGHTHATHMGVNTRWLALVVTLVTLAILAISLLVSMFDARLQARTSLLASSLAEANKEL 257

Query: 101 SQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +QL+  D L+ L N       L            + +++F D+D FK +ND +GH  GD+
Sbjct: 258 AQLALHDTLTRLPNRILLEDRLDQAIRKADREGSRFALMFMDLDGFKAVNDAYGHNTGDQ 317

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  ++++L         + R+GG+EF   A      +AA LAN L   I+         
Sbjct: 318 LLIAVTERLKEQLKGQFTLARIGGDEFVLLAETDQPNDAAALANALVHAIDG--PFAVEP 375

Query: 214 PSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             + +TIS GIA   H       +++ AD A+Y  K +GRN    F    N   
Sbjct: 376 YELVVTISIGIAFYPHDGKNGRELLFNADAAMYHTKHTGRNGYSFFQPSMNTQA 429


>gi|153011902|ref|YP_001373115.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188]
 gi|151563790|gb|ABS17286.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188]
          Length = 231

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 112/224 (50%), Gaps = 16/224 (7%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101
           ++ IA +   +  L+  Y  +  L   ++L+ +     LL+  I+ +  KEL      +S
Sbjct: 8   LLSIAGVIGAFPVLSQMYEFQPSLRFGIALMSLG---PLLVATINAARQKELSD----LS 60

Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           + +  D L+GLL+ SAF                 L+ +  DID+FKQIND  GH  GDKV
Sbjct: 61  RAAYFDVLTGLLSRSAFRERGQKLLRESIVAGRDLTAMMLDIDHFKQINDQNGHASGDKV 120

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   +  +          GRLGGEEFA     +S ++A  +A+ +R  ++N+    +   
Sbjct: 121 LIDFAQLVRDQLREGDLFGRLGGEEFAILLPNTSSRQAEKIASRVRLRVQNATFTGTDNQ 180

Query: 215 SIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            + +T+S G+ +   C    +  +++ ADQ++Y AK SGRN V+
Sbjct: 181 PLKVTVSMGLVDIADCPSTKLDELLHCADQSMYAAKSSGRNIVI 224


>gi|119896717|ref|YP_931930.1| GGDEF/PAS-domain-containing protein [Azoarcus sp. BH72]
 gi|119669130|emb|CAL93043.1| GGDEF/PAS-domain containing protein [Azoarcus sp. BH72]
          Length = 647

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 11/181 (6%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVF 133
           L   IS   +         +++L+  D L+GL N     +           +N   +++ 
Sbjct: 452 LFAQISN--IDARKEVEAEVARLAFYDPLTGLPNRRLLEARAELTLAAARRHNGHAAVMV 509

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK+IND+ GH VGD+V+A L+ +L  V      V RLGG+EF     G    EA 
Sbjct: 510 LDLDGFKEINDSAGHAVGDEVLAQLATRLRHVVRDSDTVARLGGDEFVILL-GEPAGEAE 568

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252
           +    +R     +    ++G +  +T S GIA    H +  + ++  AD A+Y +K++GR
Sbjct: 569 VRTAAVRISHALTVPLTAAGHNWLVTASVGIALHPDHGDNFADLLGAADTAMYRSKRTGR 628

Query: 253 N 253
            
Sbjct: 629 G 629


>gi|330972353|gb|EGH72419.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 810

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 18/192 (9%)

Query: 83  GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           G ISG++L    ++  +     +S  +  D L+GL+N S F   L               
Sbjct: 348 GVISGAVLVLHDMTQEQQYIADLSWQAAHDPLTGLVNRSEFERRLQRVLDEDCGQGRSHC 407

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F D+D FK +ND  GH  GD+++  L   L         + RLGG+EF    +    +
Sbjct: 408 LMFLDLDQFKLVNDTGGHAAGDELLRQLCRALPQGLRDGDTLARLGGDEFGVLLVDCPAE 467

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI---IYRADQALYVA 247
            A  +A  LR++++     +  G     T+S G+      +  +++   +  AD A Y+A
Sbjct: 468 TALDMAEALREVVQRLHF-MWKGRPFMTTVSIGLVHL--GDTPASLEGSLSAADMACYMA 524

Query: 248 KKSGRNRVVCFS 259
           K+ GRNRV  +S
Sbjct: 525 KERGRNRVQAYS 536


>gi|300866727|ref|ZP_07111410.1| Regulatory components of sensory transduction system (fragment)
           [Oscillatoria sp. PCC 6506]
 gi|300335275|emb|CBN56570.1| Regulatory components of sensory transduction system (fragment)
           [Oscillatoria sp. PCC 6506]
          Length = 231

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL  +   +S+L  +D L+ + N   F   L           + L+++  DIDYFK+ ND
Sbjct: 42  ELQRANQELSRLVNLDGLTQVANRRRFDYYLAREWQRHLREQQPLALILMDIDYFKRYND 101

Query: 145 NFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  +  +       V R GGEEF A    ++ + A I+A  +R  I
Sbjct: 102 RYGHQRGDDCLIQVAQAIAKIPKRPTDLVARYGGEEFVAILPNTNAEGALIVAESIRMAI 161

Query: 204 ENSQINISSGP-SIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVC 257
               I       + ++T+S G+          +  +I  AD+ALY+AK  GR+R + 
Sbjct: 162 AAIAIPHPKSEVNPYLTLSLGVTSLIPSLDMRLEDLIANADRALYLAKNQGRDRAIV 218


>gi|254994902|ref|ZP_05277092.1| response regulator PleD [Anaplasma marginale str. Mississippi]
          Length = 455

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 14/187 (7%)

Query: 81  LLGYISGSILKELFISYNRIS-----QLSRIDCLSGLLNHSAFI-------SSLGSYNEK 128
           LL   +  + ++ +    R+      ++S  D L+G  N   F        +      + 
Sbjct: 266 LLARTNVQVKRKRYQDALRMHLEDNAEMSITDPLTGCYNRRYFDMHFQNIVNEARDKGKD 325

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS++  D+D+FK++ND FGH VGD+++  L  ++         + R GGEEF      + 
Sbjct: 326 LSVMIIDVDHFKRVNDTFGHTVGDELLQQLRKRIFDNIRISDLLARFGGEEFVIILPETG 385

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
             +A   A  LR+ +     N S G  +  T+S G+AE    E     + RAD+ LY AK
Sbjct: 386 IDQAMTAAERLRQKVAEEPFNTSGGA-LEKTVSIGVAEFRPSEEAKDFLNRADKCLYSAK 444

Query: 249 KSGRNRV 255
           ++ RN V
Sbjct: 445 ET-RNAV 450


>gi|228903989|ref|ZP_04068096.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222]
 gi|228855634|gb|EEN00187.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222]
          Length = 785

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 10/205 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           +L   +++V I I       Y+    +  +    + I+ L+  D ++ + N   F   L 
Sbjct: 318 MLFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELD 377

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     +K  +++ D++ FK IND  GH +GD+V+  ++ +        + + R+G
Sbjct: 378 RSIKRVQKTQDKFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPTIPLARIG 437

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           G+EFA      +EQ+   L   L  I E  +  + +  S ++++S GIA         +T
Sbjct: 438 GDEFAIIVHNQTEQQLLNLCKTLFLITE--EPFVVNQHSFYLSLSIGIAVYPFGGINTTT 495

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++  AD A+Y AK+ G N V  + +
Sbjct: 496 LLQHADIAMYSAKEKGNNAVCMYDE 520


>gi|85708867|ref|ZP_01039933.1| sensory box/GGDEF family protein [Erythrobacter sp. NAP1]
 gi|85690401|gb|EAQ30404.1| sensory box/GGDEF family protein [Erythrobacter sp. NAP1]
          Length = 696

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 12/190 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           +GS + + +       +L++ D L+GL N           +++  +     +I+  D+D 
Sbjct: 106 TGSDITDEYHREEETERLAKYDSLTGLSNRHRMKHQIETTLTAFQAAKRNCAILMLDLDK 165

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILAN 197
           FK +ND  GH  GD+++  +SD+L         +GRLGG+EF        ++     +A 
Sbjct: 166 FKHVNDTLGHSAGDELLRQVSDRLQRSIEVECEIGRLGGDEFQVMIPDQDDRGVLSEIAM 225

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            +  +++    ++  G +I I  S GIA   H    +  I+  AD ALY AK  GR +  
Sbjct: 226 KIITMLKQ-PYSLDEGRAI-IGCSVGIAIAPHDGVTMDEIVRNADLALYAAKNGGRGQYR 283

Query: 257 CFS-DIENNT 265
            FS ++EN  
Sbjct: 284 FFSGELENEA 293


>gi|301017630|ref|ZP_07182304.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
 gi|300400124|gb|EFJ83662.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
          Length = 661

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|254701017|ref|ZP_05162845.1| diguanylate cyclase GGDEF domain-containing protein [Brucella suis
           bv. 5 str. 513]
 gi|261751542|ref|ZP_05995251.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella suis bv. 5 str. 513]
 gi|261741295|gb|EEY29221.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella suis bv. 5 str. 513]
          Length = 703

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFF 134
           L+G +    + E      R+  ++  D L+GL N + F   +GS  +        ++ + 
Sbjct: 249 LIGLV--EDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHVGSLLKKGSDCDPFALFYL 306

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK +ND+  H  GD+++  ++ +L  +     F+ RLGG+EFA      +  + A+
Sbjct: 307 DIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGTLAQIAM 366

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
            A+ +    ++    +  G +  +T S GIA+   H +    ++  AD ALY +K  GR 
Sbjct: 367 FADRVLSAFQD--PFVLGGNAEFVTCSMGIAQAPLHGDNPDVLMRNADLALYASKSGGRR 424

Query: 254 RVVCFSD 260
               + D
Sbjct: 425 TFRFYQD 431


>gi|256830096|ref|YP_003158824.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579272|gb|ACU90408.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfomicrobium baculatum DSM 4028]
          Length = 1158

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 83/187 (44%), Gaps = 12/187 (6%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFF 134
            +   S + E      ++++ +  D L+GL N   F+  L             + +++  
Sbjct: 704 AFFIFSDISERKNYEAQLTRQALRDNLTGLPNRVLFMDRLNRAMTRQQRNGEYRFAVLMI 763

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAA 193
           D+D FK++ND  GH  GD ++  ++ +L     T   V R+GG+EFA       +  EA 
Sbjct: 764 DLDSFKRVNDTLGHQAGDHLLQEVAARLTHCLRTMDTVARMGGDEFAVLLEDFQNNHEAI 823

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252
            +   L   I   Q        + ++ S G+  +  +    + ++  AD ++Y +K+ G+
Sbjct: 824 GITRRLLDTIR--QPLKIQDRDVLVSASVGVVLQTARYTSPNDLLRDADISMYRSKELGK 881

Query: 253 NRVVCFS 259
           N+   FS
Sbjct: 882 NQFKVFS 888


>gi|254975836|ref|ZP_05272308.1| putative signaling protein [Clostridium difficile QCD-66c26]
 gi|255314965|ref|ZP_05356548.1| putative signaling protein [Clostridium difficile QCD-76w55]
 gi|255517640|ref|ZP_05385316.1| putative signaling protein [Clostridium difficile QCD-97b34]
 gi|255650750|ref|ZP_05397652.1| putative signaling protein [Clostridium difficile QCD-37x79]
          Length = 391

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 116/287 (40%), Gaps = 35/287 (12%)

Query: 5   LKDFLSIWLCHEKNLESF-----SPHTFMIYFSIFFSI--FIATVIFIANIFLFYIGLTP 57
              F  +W C    L+       S  ++++  +  FS+  F  +VI     FLF     P
Sbjct: 107 YVTFFCLWGCVITLLDQLGGNDLSVFSYIMLAAAAFSVLKFGESVIVFGGCFLFLNLFLP 166

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELF----------ISYNRISQLSR-- 105
             G++ I     S ++ +  I+ L  ++S  + +               Y  IS ++   
Sbjct: 167 --GIQTIPGNEFSNIVNTFFITSLAIFVSTMLYRNRVFTYYDKLLISQQYEEISHINNLL 224

Query: 106 -----IDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
                 D L+ + N       L          E ++ +  DIDYFKQ NDN+GH  GD  
Sbjct: 225 NDKVMTDDLTKMNNRRYLEDILQKKLISHANQEPITGMMIDIDYFKQFNDNYGHQKGDYC 284

Query: 155 IAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  ++  ++           R GGEEF        E +A + +  LRKIIE+        
Sbjct: 285 LQNIAKVILDFTSSENEHAIRYGGEEFFICIFNCDETDAKLKSECLRKIIESCNFERDDV 344

Query: 214 PSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           P   +T+S G+  +       ++  I   D+ALY AK+ GRN V  +
Sbjct: 345 PLKCVTVSIGVYTKKIEKAITLNEFISNCDKALYTAKEQGRNCVAFY 391


>gi|254449440|ref|ZP_05062877.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Octadecabacter antarcticus 238]
 gi|198263846|gb|EDY88116.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Octadecabacter antarcticus 238]
          Length = 529

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 11/182 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
           G  + E   + + I + +  D L+GL N       L              +++  DID F
Sbjct: 69  GQDVTEQKRANDLIWKQAHYDILTGLPNRRMARDRLEETIKKSRRTGLPFALLMLDIDRF 128

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND  GH  GD ++  +  ++         V RLGG+EFA     S  ++     +  
Sbjct: 129 KEVNDALGHAQGDLLLVEIGRRITKCVRESDTVSRLGGDEFAIIL--SDLEQIEKSGHVA 186

Query: 200 RKIIENSQINISSGPSIH-ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           +KIIE   +    G +   ++ S GI    +      T+   AD+A+Y+AKKSG NRV  
Sbjct: 187 QKIIEALAMPFRLGDNTSFVSASMGITLSPNDAVDSDTLRVNADEAMYLAKKSGGNRVCH 246

Query: 258 FS 259
           ++
Sbjct: 247 YT 248


>gi|94500862|ref|ZP_01307388.1| response regulator [Oceanobacter sp. RED65]
 gi|94426981|gb|EAT11963.1| response regulator [Oceanobacter sp. RED65]
          Length = 290

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 10/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           S+  +      ++  LS  D L+G+ N   +   L              +++  D+D+FK
Sbjct: 100 SLHVQRLEHVQKLESLSITDNLTGVFNRRKYDEDLDRCWRQSIRQQTPCTLLLLDVDHFK 159

Query: 141 QINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GH  GD+ +  ++             V R+GGEEFA     + +  A  +AN +
Sbjct: 160 VFNDTYGHLAGDQCLREIAKVFQEEAVRPHDTVARIGGEEFAIILPDTPKIGAVHVANRI 219

Query: 200 RKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            K + +  I     P   +T+SAGIA      K+ +      AD ALY AK  GRN VV
Sbjct: 220 LKRVSSLGILNEETPFGVVTLSAGIACVTPTAKDRLVNFQSHADDALYEAKAKGRNCVV 278


>gi|17988014|ref|NP_540648.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 1
           str. 16M]
 gi|265992417|ref|ZP_06104974.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella melitensis bv. 1 str. Rev.1]
 gi|17983758|gb|AAL52912.1| diguanylate cyclase/phosphodiesterase domain 2 (eal) [Brucella
           melitensis bv. 1 str. 16M]
 gi|263003483|gb|EEZ15776.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella melitensis bv. 1 str. Rev.1]
          Length = 709

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFF 134
           L+G +    + E      R+  ++  D L+GL N + F   +GS  +        ++ + 
Sbjct: 255 LIGLV--EDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHVGSLLKKGSDCDPFALFYL 312

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK +ND+  H  GD+++  ++ +L  +     F+ RLGG+EFA      +  + A+
Sbjct: 313 DIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGTLAQIAM 372

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
            A+ +    ++    +  G +  +T S GIA+   H +    ++  AD ALY +K  GR 
Sbjct: 373 FADRVLSAFQD--PFVLGGNAEFVTCSMGIAQAPLHGDNPDVLMRNADLALYASKSGGRR 430

Query: 254 RVVCFSD 260
               + D
Sbjct: 431 TFRFYQD 437


>gi|16129246|ref|NP_415801.1| cyclic-di-GMP phosphodiesterase; csgD regulator; modulator of Rnase
           II stability [Escherichia coli str. K-12 substr. MG1655]
 gi|89108131|ref|AP_001911.1| modulator of Rnase II stability [Escherichia coli str. K-12 substr.
           W3110]
 gi|157155383|ref|YP_001462586.1| RNase II stability modulator [Escherichia coli E24377A]
 gi|170080964|ref|YP_001730284.1| modulator of RNase II stability [Escherichia coli str. K-12 substr.
           DH10B]
 gi|191165004|ref|ZP_03026848.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli B7A]
 gi|193062659|ref|ZP_03043753.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli E22]
 gi|194425923|ref|ZP_03058479.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli B171]
 gi|209918528|ref|YP_002292612.1| RNase II stability modulator [Escherichia coli SE11]
 gi|238900521|ref|YP_002926317.1| modulator of Rnase II stability [Escherichia coli BW2952]
 gi|256023003|ref|ZP_05436868.1| RNase II stability modulator [Escherichia sp. 4_1_40B]
 gi|260843634|ref|YP_003221412.1| modulator of Rnase II stability [Escherichia coli O103:H2 str.
           12009]
 gi|300822548|ref|ZP_07102687.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
 gi|300904935|ref|ZP_07122753.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|300948364|ref|ZP_07162470.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1]
 gi|300954535|ref|ZP_07166981.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1]
 gi|301022760|ref|ZP_07186604.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
 gi|301304370|ref|ZP_07210483.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|301647217|ref|ZP_07247036.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|307309959|ref|ZP_07589609.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Escherichia coli W]
 gi|309793239|ref|ZP_07687666.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
 gi|331667674|ref|ZP_08368538.1| protein gmr [Escherichia coli TA271]
 gi|2495597|sp|P77334|GMR_ECOLI RecName: Full=Cyclic di-GMP phosphodiesterase Gmr
 gi|1742099|dbj|BAA14839.1| modulator of Rnase II stability [Escherichia coli str. K12 substr.
           W3110]
 gi|1787541|gb|AAC74367.1| cyclic-di-GMP phosphodiesterase; csgD regulator; modulator of Rnase
           II stability [Escherichia coli str. K-12 substr. MG1655]
 gi|157077413|gb|ABV17121.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli E24377A]
 gi|169888799|gb|ACB02506.1| modulator of Rnase II stability [Escherichia coli str. K-12 substr.
           DH10B]
 gi|190904776|gb|EDV64481.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli B7A]
 gi|192931781|gb|EDV84381.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli E22]
 gi|194415978|gb|EDX32244.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli B171]
 gi|209911787|dbj|BAG76861.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|238861791|gb|ACR63789.1| modulator of Rnase II stability [Escherichia coli BW2952]
 gi|257758781|dbj|BAI30278.1| modulator of Rnase II stability [Escherichia coli O103:H2 str.
           12009]
 gi|260449582|gb|ACX40004.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Escherichia coli DH1]
 gi|299881109|gb|EFI89320.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
 gi|300318445|gb|EFJ68229.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1]
 gi|300403084|gb|EFJ86622.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|300452125|gb|EFK15745.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1]
 gi|300524964|gb|EFK46033.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
 gi|300840357|gb|EFK68117.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|301074579|gb|EFK89385.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|306909677|gb|EFN40171.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Escherichia coli W]
 gi|308122826|gb|EFO60088.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
 gi|309701585|emb|CBJ00892.1| putative signal transduction protein [Escherichia coli ETEC H10407]
 gi|315060539|gb|ADT74866.1| modulator of Rnase II stability [Escherichia coli W]
 gi|315254326|gb|EFU34294.1| diguanylate cyclase domain protein [Escherichia coli MS 85-1]
 gi|323378899|gb|ADX51167.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Escherichia coli KO11]
 gi|323937610|gb|EGB33878.1| AL domain-containing protein [Escherichia coli E1520]
 gi|323942403|gb|EGB38573.1| EAL domain-containing protein [Escherichia coli E482]
 gi|323947431|gb|EGB43435.1| AL domain-containing protein [Escherichia coli H120]
 gi|324018897|gb|EGB88116.1| diguanylate cyclase domain protein [Escherichia coli MS 117-3]
 gi|331065259|gb|EGI37154.1| protein gmr [Escherichia coli TA271]
          Length = 661

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|323964199|gb|EGB59683.1| GGDEF domain-containing protein [Escherichia coli M863]
 gi|327254139|gb|EGE65768.1| diguanylate cyclase domain protein [Escherichia coli STEC_7v]
          Length = 460

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 281 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 339 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 399 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 456


>gi|119776293|ref|YP_929033.1| response regulator [Shewanella amazonensis SB2B]
 gi|119768793|gb|ABM01364.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella amazonensis SB2B]
          Length = 576

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 12/187 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           S+ + L  S+ ++ +L+  D L+ L+N   F       +S +      LS++  D+D FK
Sbjct: 124 SMARALRRSHEKLRELAEHDSLTRLVNRYGFELCLNRALSQVRRTGGMLSVILLDLDDFK 183

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDL 199
            +ND  GH +GD ++  ++ +L         + R+GG+EF A       +     LA  L
Sbjct: 184 GVNDTLGHQMGDVLLVEVATRLSSALRENDLIARIGGDEFVALICDQDTRFLPFDLAKRL 243

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCF 258
               E     +     + +  S GIA           ++  AD A+Y AK+ GRN++  +
Sbjct: 244 LSTFEE-PFQLGDSA-VMMGASLGIAIYGECANTAYDLLKCADIAMYRAKEEGRNQIQFY 301

Query: 259 S-DIENN 264
           S D+EN 
Sbjct: 302 SLDLENE 308


>gi|300789504|ref|YP_003769795.1| GGDEF domain-containing diguanylate cyclase [Amycolatopsis
           mediterranei U32]
 gi|299799018|gb|ADJ49393.1| GGDEF domain-containing diguanylate cyclase [Amycolatopsis
           mediterranei U32]
          Length = 480

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 13/181 (7%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDN 145
                +++    R D  +G+LN   +  +     E+       L+++  D+D+FK IND 
Sbjct: 292 RLAELDQLQNDVRTDPKTGILNMRGWSEAAERALERTSRSGDQLALLMVDLDHFKWINDT 351

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GHP GD V+  ++  L  V      VGR GGEEF        E      A  +R  I  
Sbjct: 352 YGHPAGDDVLRTVAQTLDEVTRPSDLVGRFGGEEFLILLPDIDEDATWDAAERIRIAIAK 411

Query: 206 SQINISSGPSIHITI-----SAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +  +       TI     S G+A    H + +  ++  AD A+Y+AK++GR++V    
Sbjct: 412 LHMVTTDKRGDPATIADRTTSIGVARHPRHGDTLERLLQSADAAVYLAKENGRDQVCFAP 471

Query: 260 D 260
           D
Sbjct: 472 D 472


>gi|260219806|emb|CBA26707.1| hypothetical protein Csp_H39940 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 292

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 68/256 (26%), Positives = 105/256 (41%), Gaps = 30/256 (11%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITI---------- 78
           +   I F +       I+        L   Y LE+  V  L L  + +            
Sbjct: 26  LMICIMFGVLSLMRPAISVPVFGMTYLVFVYMLEHASVNPLQLTSLHVIAAVAPALALVT 85

Query: 79  ----------SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-----SSLG 123
                     S+LL        + L +    ++ L+  D L+GL N   FI       L 
Sbjct: 86  AWMNWSQYAKSVLLRRQLKRSNEALVVQQQELAFLADHDALTGLYNRREFIRLAQMELLR 145

Query: 124 SYNEKL--SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
           +       +++  D+D+FK+IND +GHP GD V+   +  L         + RLGGEEF 
Sbjct: 146 ATRVPCETAVIMVDLDFFKKINDRYGHPGGDAVLKATAACLNQALRATDTLARLGGEEFI 205

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYR 239
                +  + A  +A  LR  + N+ I    G  I +T S G++    +    +  I   
Sbjct: 206 VLLPATGREGALQVATKLRDAVRNTAIEFDGGL-IAVTASFGVSSVPAQKHGTVDAIYAA 264

Query: 240 ADQALYVAKKSGRNRV 255
           AD+ALYVAK+ GR+RV
Sbjct: 265 ADRALYVAKQLGRDRV 280


>gi|218962106|ref|YP_001741881.1| hypothetical protein CLOAM1846 [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730763|emb|CAO81675.1| hypothetical protein CLOAM1846 [Candidatus Cloacamonas
           acidaminovorans]
          Length = 578

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 87/178 (48%), Gaps = 12/178 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           ++   Y ++ +LS  D L+GL N      +L         +N  +     DID+FK +ND
Sbjct: 391 KIEELYEKVGELSLTDSLTGLRNRRYLEGNLFQMVILAARHNVPVCFSMIDIDFFKLVND 450

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH  GD V+  L+  L   F     V R GG+EF      S ++ +  +  DLR+ IE
Sbjct: 451 NYGHLAGDFVLKELARILNSEFRKSDVVIRYGGDEFLVILFDSDQRLSYSIMEDLRQKIE 510

Query: 205 NSQINISSGPSIHITISAGIAERCH----KEPISTIIYRADQALYVAKKSGRNRVVCF 258
               +  +   I  TIS GIA   H     + ++  I  ADQA YVAK +GRNRV  +
Sbjct: 511 AYSFDY-NNQIITFTISIGIACDFHISSQPKNLAKCIACADQACYVAKTNGRNRVELY 567


>gi|163751215|ref|ZP_02158443.1| GGDEF family protein [Shewanella benthica KT99]
 gi|161328929|gb|EDQ00003.1| GGDEF family protein [Shewanella benthica KT99]
          Length = 334

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 64/209 (30%), Positives = 103/209 (49%), Gaps = 12/209 (5%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSI---LKELFISYNRI---SQLSRIDCLSGLL 113
            LE +L    SLV  S  I     Y +G +    +E+     ++    Q+   D L+G+ 
Sbjct: 122 SLEKVLGIVRSLVKESDDIRSSTQYFTGQLNKAQQEIDALKQQLVKSEQIILYDALTGIF 181

Query: 114 NHSAFISSLG----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
           N  AF + L        + L ++  DID+FK  NDN+GH +GD+V+  ++ +L+      
Sbjct: 182 NRRAFDNDLRGSLSQSPDGLCLILVDIDHFKTFNDNYGHQLGDQVLKAVAKRLLEACRNG 241

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH-ITISAGIAER 227
             + R GGEEFA     S    +  LA  +R+ +E   + +      I+ IT S G+A+ 
Sbjct: 242 AKIYRYGGEEFAVIIPKSQLSSSRHLAESMRRGLEKISLKDRRKNVRINKITASFGVAQW 301

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVV 256
                 + +I +AD+ LY AK+ GRNRV+
Sbjct: 302 HKNLEGAELIEKADKLLYEAKRLGRNRVM 330


>gi|52841126|ref|YP_094925.1| sensory box protein [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|54296911|ref|YP_123280.1| hypothetical protein lpp0952 [Legionella pneumophila str. Paris]
 gi|52628237|gb|AAU26978.1| sensory box protein/GGDEF/EAL domains [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|53750696|emb|CAH12103.1| hypothetical protein lpp0952 [Legionella pneumophila str. Paris]
          Length = 771

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 11/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
            + +     +++   +  D L+ L N    +  +     +       L+ +F D+D FK 
Sbjct: 325 DVTQRRDMEDQLLLQATYDSLTNLPNRVLLMDRVEQAILQARKNKAILAFLFLDLDRFKL 384

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLR 200
            ND  GH +GDK++  ++++L++V      V RLGG+EF           EA  +A ++ 
Sbjct: 385 TNDTLGHSMGDKLLQAIANRLLIVTEDFDTVARLGGDEFVILLTDIDNMLEAETIAQNIL 444

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           KIIE   I I    S+ IT S GI+      +   +++  AD ++Y AK +GRN    + 
Sbjct: 445 KIIEK-PIQI-DQHSLKITGSLGISFYPRDGDDYESLMKSADLSMYHAKDTGRNNYRVYE 502

Query: 260 DIENN 264
              N 
Sbjct: 503 PEMNR 507


>gi|256060351|ref|ZP_05450524.1| diguanylate cyclase GGDEF domain-containing protein [Brucella
           neotomae 5K33]
          Length = 703

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFF 134
           L+G +    + E      R+  ++  D L+GL N + F   +GS  +        ++ + 
Sbjct: 249 LIGLV--EDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHVGSLLKKGSDCDPFALFYL 306

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK +ND+  H  GD+++  ++ +L  +     F+ RLGG+EFA      +  + A+
Sbjct: 307 DIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGTLAQIAM 366

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
            A+ +    ++    +  G +  +T S GIA+   H +    ++  AD ALY +K  GR 
Sbjct: 367 FADRVLSAFQD--PFVLGGNAEFVTCSMGIAQAPLHGDNPDVLMRNADLALYASKSGGRR 424

Query: 254 RVVCFSD 260
               + D
Sbjct: 425 TFRFYQD 431


>gi|170722389|ref|YP_001750077.1| diguanylate cyclase [Pseudomonas putida W619]
 gi|169760392|gb|ACA73708.1| diguanylate cyclase [Pseudomonas putida W619]
          Length = 386

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 13/202 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS--- 121
           L +++S+ I ++T+ +   Y  G +L     S +R+  L+  D L+G  N  A +     
Sbjct: 182 LKQSISVAIGTVTVMM---YSIGLVLMAKERSESRLKHLALRDVLTGTYNRRAILERFAV 238

Query: 122 ----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                      L++   D+D+FK+IND +GH  GD+V+     QL         +GR GG
Sbjct: 239 ELDRARGERSSLAVAMIDLDHFKRINDLYGHLAGDEVLCHCVRQLEQRLRHGDSLGRYGG 298

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPIST 235
           EEF      +    A      LR+ I  S  +  +G  I +  S G+        +  ++
Sbjct: 299 EEFLLLLPHADRDGAMAALQGLREAIALSPAHF-AGDQITLRFSVGLWCGVPGPHDTTAS 357

Query: 236 IIYRADQALYVAKKSGRNRVVC 257
           ++ +AD ALY AK +GRN V  
Sbjct: 358 LLAQADAALYQAKAAGRNTVHM 379


>gi|332305358|ref|YP_004433209.1| diguanylate cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172687|gb|AEE21941.1| diguanylate cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 666

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 5/166 (3%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGS----YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
             +   +  D L+ L N  AF  +L            + F D+DYFK IND  GH  GD+
Sbjct: 245 ETLFHQASHDPLTELQNRRAFERNLKQVIQDNQHNYFLCFIDLDYFKTINDTCGHAAGDE 304

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  ++  L     +   V RLGG+EFA   L    ++A  +AN++++ I     +   G
Sbjct: 305 ILVSVARILKSNVRSNDIVARLGGDEFAILILDCPFEKALQIANNIKENIRTLTYHW-EG 363

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + H++ S G+A +      + ++  AD A  +AK +GRN V  + 
Sbjct: 364 ETFHLSASIGVAPKVKHNSTTDLLNAADVACGLAKSAGRNTVRLYD 409


>gi|330972351|gb|EGH72417.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 308

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 8/170 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y   +Q +  D L+   N  A    L         + + LS++  DID+FK++ND +GH 
Sbjct: 140 YRIATQTALRDPLTSTGNRIAMDQGLAREIEISRRHKQPLSLLMLDIDHFKKVNDEYGHH 199

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  L         V R GGEEF      +    A ++   L + + N +  
Sbjct: 200 TGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGADSAELIGQRLCQAVRNLEFR 259

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               P++ +T+S G +     E   +++ RAD ALYVAK+ GRNR+   S
Sbjct: 260 -ELSPALTMTVSLGCSTLLPTETADSLLRRADNALYVAKREGRNRIAMAS 308


>gi|221067583|ref|ZP_03543688.1| diguanylate cyclase [Comamonas testosteroni KF-1]
 gi|220712606|gb|EED67974.1| diguanylate cyclase [Comamonas testosteroni KF-1]
          Length = 184

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 95/185 (51%), Gaps = 8/185 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQIND 144
             +   L      +   +  D L+G+LN +A I  +  Y  ++ LS++  DID+FK+IND
Sbjct: 2   NQLNSRLQDLAAELEHRATHDTLTGVLNRAAVIELVNQYFVHDDLSLIVLDIDHFKRIND 61

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +FGHP GDKVI  +   L  V  +   +GR+GGEEF       S   +  LA DLR+ IE
Sbjct: 62  SFGHPTGDKVILGVVACLQAVVPSSAQIGRVGGEEFTVVLPRQSAHVSERLAQDLRRAIE 121

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS----D 260
               ++  G    ++ S G++         +    AD+ALYVAK+ GRN+V   S     
Sbjct: 122 ICDFDLPDGS--GVSASFGVSWAPAGGDFDSAYGFADEALYVAKRGGRNQVCLSSCSMQS 179

Query: 261 IENNT 265
           +E+ T
Sbjct: 180 LEHET 184


>gi|157158939|ref|YP_001462767.1| diguanylate cyclase [Escherichia coli E24377A]
 gi|170683103|ref|YP_001743737.1| diguanylate cyclase [Escherichia coli SMS-3-5]
 gi|193066931|ref|ZP_03047900.1| diguanylate cyclase [Escherichia coli E110019]
 gi|256018293|ref|ZP_05432158.1| putative diguanylate cyclase YddV [Shigella sp. D9]
 gi|301023411|ref|ZP_07187196.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
 gi|307314761|ref|ZP_07594356.1| diguanylate cyclase [Escherichia coli W]
 gi|331673019|ref|ZP_08373796.1| diguanylate cyclase YddV (DGC) [Escherichia coli TA280]
 gi|332279339|ref|ZP_08391752.1| diguanylate cyclase [Shigella sp. D9]
 gi|157080969|gb|ABV20677.1| diguanylate cyclase [Escherichia coli E24377A]
 gi|170520821|gb|ACB18999.1| diguanylate cyclase [Escherichia coli SMS-3-5]
 gi|192959521|gb|EDV89955.1| diguanylate cyclase [Escherichia coli E110019]
 gi|300397039|gb|EFJ80577.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
 gi|306905728|gb|EFN36255.1| diguanylate cyclase [Escherichia coli W]
 gi|315060766|gb|ADT75093.1| predicted diguanylate cyclase [Escherichia coli W]
 gi|323378668|gb|ADX50936.1| diguanylate cyclase [Escherichia coli KO11]
 gi|331069798|gb|EGI41176.1| diguanylate cyclase YddV (DGC) [Escherichia coli TA280]
 gi|332101691|gb|EGJ05037.1| diguanylate cyclase [Shigella sp. D9]
          Length = 460

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 281 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 339 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 399 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 456


>gi|123442661|ref|YP_001006638.1| putative inner membrane protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089622|emb|CAL12472.1| putative inner membrane protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 371

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 68/254 (26%), Positives = 114/254 (44%), Gaps = 19/254 (7%)

Query: 27  FMIYFSIFFSIFIATVIFI-------ANIFLFYIGLTPFY-GLEYILVENLSLVIISITI 78
           ++   ++  +I I  ++F        + IF   I L   Y  L  +L+   +L    I +
Sbjct: 102 WVTLDNVLITIVIIPLLFSKVWEKKSSRIFYTTIILIAIYRMLTAVLLVPNTLFWTQIVV 161

Query: 79  SLLLGYISGSI------LKELFI-SYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EK 128
             L+  +  +I       KE  I +Y  +   + ID L+ L N S+    L S N   + 
Sbjct: 162 YQLISALCLAICYHALNFKERHIYAYFAMKDRANIDKLTQLNNRSSADYRLNSINHNRQA 221

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
             ++  D+D+FK +ND +GH  GD ++  +   L+       FVGR GGEEF        
Sbjct: 222 CGLLILDLDHFKSVNDTYGHDGGDILLTEVGKLLMTAVRDEDFVGRYGGEEFIIITHSHD 281

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
            Q    +A  +R+ +E+  + +  G  +  TIS G +       +   +   D+ALY AK
Sbjct: 282 PQAIKAVAERIRQRVESLDVQLPDGRKLKATISIGASLFLPGMSMLKALKMTDEALYQAK 341

Query: 249 KSGRNRVVCFSDIE 262
             GRN+VV +S + 
Sbjct: 342 NQGRNQVV-YSRLM 354


>gi|170726479|ref|YP_001760505.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169811826|gb|ACA86410.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
          Length = 341

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 6/177 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG----SYNEKLSIVFFDIDYFKQ 141
           +   +  L     +  +    D L+G+LN  AF S L        + L ++  DID+FK 
Sbjct: 161 AQQEIDALKAQLKKSEKDVLFDALTGVLNRRAFDSDLKGSLSQSPDGLCLILIDIDHFKA 220

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            NDN+GH +GD+V+  ++ +L         + R GGEEFA     S  ++A  LA  +R+
Sbjct: 221 FNDNYGHQLGDQVLKAVAKRLGESCREGTKLYRYGGEEFAVITANSQLRKARHLAEAMRR 280

Query: 202 IIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +E   +      ++  +IT S G+A+       + +I ++D+ LY AK+ GRNRV+
Sbjct: 281 ALEKVSLKDRRKDAMINNITASFGVAQWDPSLSATQLIEQSDKLLYEAKRLGRNRVM 337


>gi|126699861|ref|YP_001088758.1| putative signaling protein [Clostridium difficile 630]
 gi|115251298|emb|CAJ69129.1| putative diguanylate kinase signaling protein [Clostridium
           difficile]
          Length = 391

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 119/287 (41%), Gaps = 35/287 (12%)

Query: 5   LKDFLSIWLCHEKNLESF-----SPHTFMIYFSIFFSI--FIATVIFIANIFLFYIGLTP 57
              F  +W C    L+       S  ++++  +  FS+  F  +VI     FLF     P
Sbjct: 107 YVTFFCLWGCVITLLDQLGGNDLSVFSYIMLAAAAFSVLKFGESVIVFGGCFLFLNLFLP 166

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELF----------ISYNRISQLSR-- 105
             G++ I     S ++ +  I+ L  ++S  + +               Y  IS ++   
Sbjct: 167 --GIQTIPGNEFSNIVNTFFITSLAIFVSTMLYRNRVFTYYDKLLISQQYEEISHINNLL 224

Query: 106 -----IDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
                 D L+ + N       L          E ++ +  DIDYFKQ NDN+GH  GD  
Sbjct: 225 NDKVMTDDLTKMNNRRYLEDILQKKLISHANQEPITGMMIDIDYFKQFNDNYGHQKGDYC 284

Query: 155 IAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  ++  ++           R GGEEF       +E +A + +  LRKIIE+        
Sbjct: 285 LQNIAKVILDFTSSENEHAIRYGGEEFFICIFNCNEADAKLKSECLRKIIESCNFERDDV 344

Query: 214 PSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCF 258
           P   +T+S G+  +  ++ I  +  I   D+ALY AK+ GRN V  +
Sbjct: 345 PLKCVTVSIGVYTKKIEKTITLNEFISNCDKALYTAKEQGRNCVAFY 391


>gi|30262524|ref|NP_844901.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames]
 gi|47527823|ref|YP_019172.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185366|ref|YP_028618.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne]
 gi|30257156|gb|AAP26387.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames]
 gi|47502971|gb|AAT31647.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49179293|gb|AAT54669.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne]
          Length = 912

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 96/200 (48%), Gaps = 10/200 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           +++V I I       Y+    + ++    ++I+ L+  D ++ + N   F   L    E+
Sbjct: 450 VTIVPIMIEGQTFGSYVMVKDITKMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIER 509

Query: 129 -------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                    +++ D++ FK IND  GH +GD V+  ++ +        + + R+GG+EFA
Sbjct: 510 AQKTQGEFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSIPLARIGGDEFA 569

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRA 240
                 +EQ+   L  +L +I E  +  + +  S ++++S GIA         +T++  A
Sbjct: 570 VLVHNHTEQQLLDLCENLFRITE--KPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHA 627

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D A+Y AK+ G N V  + +
Sbjct: 628 DIAMYSAKEKGNNAVCMYDE 647


>gi|325913953|ref|ZP_08176309.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325539722|gb|EGD11362.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 507

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 78/179 (43%), Gaps = 14/179 (7%)

Query: 95  ISYNRISQLSR---IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
            S NR+  L+     D L+G+ N                  +  LSI F D+D FK++ND
Sbjct: 316 ESENRMRHLAEQASRDALTGVFNRHQLGTALTHEFELASRQSWPLSIAFIDLDDFKRVND 375

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD+V+   +  L  +  T   V R GGEEF      +    A ++   +     
Sbjct: 376 AHGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEFLVILPNTPADAALMVIERILAETA 435

Query: 205 NSQINISSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +    G  +HIT SAG+A         E I  ++  AD  LY +K  GRNRV  + 
Sbjct: 436 RTPMAQLQGGPLHITFSAGLATHGGIERQFESIEHLLQAADSTLYRSKHRGRNRVTAYD 494


>gi|325681063|ref|ZP_08160595.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
 gi|324107292|gb|EGC01576.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
          Length = 363

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 107/251 (42%), Gaps = 19/251 (7%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFL----FYIGLTPFYGLEYILVENLSLVIISITIS 79
           P  F +     F  ++++++ +A   +    +    T  Y      + +L   +  +  S
Sbjct: 112 PIPFYMPLRKLFMPYLSSLVPLALYIIMRAKYGSAETAMYTFRDHSLNDLIYFLNVVMGS 171

Query: 80  LLLGYISG--SILKE-----LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSY 125
            +L YIS    I +E     L      + +L+ ID L+ L N  A    L          
Sbjct: 172 SILLYISSIYMINREIMQFKLTSKNESLQKLATIDPLTRLFNRRAMGEYLKLVHLNSERT 231

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            +  ++   DID FKQIND++GH  GD  +  ++D +        +  R GGEEF     
Sbjct: 232 GKGYAVCLGDIDDFKQINDSYGHGAGDDALKQVADIIEHSVPAEGYAARWGGEEFLFVIP 291

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            +  +     A  +R+ I +     S      +T++ G+AE    + I  +I  AD+ LY
Sbjct: 292 NADIEAGRECAEKIRRAIADRTFK-SGEKRFGVTMTIGVAEGKPDDDIEKMISLADKRLY 350

Query: 246 VAKKSGRNRVV 256
             K +G+NRV+
Sbjct: 351 AGKSAGKNRVI 361


>gi|218458642|ref|ZP_03498733.1| hypothetical protein RetlK5_03953 [Rhizobium etli Kim 5]
          Length = 226

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 88/206 (42%), Gaps = 13/206 (6%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
            +  E +      L I S    L    + G  +++     ++  + S  D L+G+ N   
Sbjct: 27  LWMTEAVQTNGWMLCIASDITRL---KVHGRTVRQ---DRDQAIKASYTDELTGVANRRF 80

Query: 118 FISS------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
            ++          +     +  FDID FK+IND  GH  GD V+   + ++         
Sbjct: 81  VMARVEDMLEAARHGSSGCLAVFDIDNFKRINDRLGHHAGDLVLRDFAHRIHQNVRRNDC 140

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
            GR+GGEEF      +  ++A  +   +  +I  S+  +   P    T SAGIA     +
Sbjct: 141 FGRVGGEEFLLVMPATGPEDALAMVERMLTVIRFSR-PLPDSPDFSYTCSAGIAAGVPTD 199

Query: 232 PISTIIYRADQALYVAKKSGRNRVVC 257
             S +  RADQALY AK  GR+RV  
Sbjct: 200 SASELYRRADQALYDAKMGGRDRVRA 225


>gi|119493186|ref|ZP_01624061.1| hypothetical protein L8106_15704 [Lyngbya sp. PCC 8106]
 gi|119452751|gb|EAW33928.1| hypothetical protein L8106_15704 [Lyngbya sp. PCC 8106]
          Length = 1653

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 12/184 (6%)

Query: 90   LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQ 141
            + E  ++  ++   +  D L+ L N   F+  L    ++         S++FFD+D FK 
Sbjct: 1206 ITERKLAEEKLRYNAYHDSLTSLPNRPFFMERLQEAIQQVKTQKGCLFSVLFFDLDDFKY 1265

Query: 142  INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLR 200
            IND+ GH +GD+++  L+D+L         + R GG+EF     G  +  +   +A +++
Sbjct: 1266 INDSLGHAIGDQLLIALTDRLRSCLRKTDILARFGGDEFTILLGGIQQIDQVIKVAQNIQ 1325

Query: 201  KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +  E +   +     +    S GIA      +    I+  AD A+Y AK  G+ +   F+
Sbjct: 1326 Q--ELNLPFVLGSHQVFTNASIGIALVTADYQQPEEILRDADIAMYSAKAQGQGKSAIFN 1383

Query: 260  DIEN 263
               +
Sbjct: 1384 RQMH 1387


>gi|91226144|ref|ZP_01261034.1| hypothetical protein V12G01_08525 [Vibrio alginolyticus 12G01]
 gi|91189378|gb|EAS75656.1| hypothetical protein V12G01_08525 [Vibrio alginolyticus 12G01]
          Length = 652

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 12/179 (6%)

Query: 89  ILKEL--FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
           +L +L       R+  L+  D L+GL N S F   L           ++ ++++ D+D F
Sbjct: 467 VLTDLSGAKEMERLEHLAHHDALTGLANRSKFHLELEQLVQRSGYLRDEFAVLYLDLDGF 526

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND +GH  GD+V+  +S++L         + RL G+EF      ++++    +A  L
Sbjct: 527 KEVNDTYGHDAGDEVLKKVSERLTSATRHSDLIARLSGDEFVMLVNPANQKVVTRIAEQL 586

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            + I  + I    G  + + +S G+      E   + ++  AD A+Y AKK+G+ + + 
Sbjct: 587 LESI-CAPIEYK-GHLLKVGVSIGVKLVGVNERDATRVLKSADTAMYQAKKAGKGQAIL 643


>gi|121999012|ref|YP_001003799.1| response regulator receiver modulated diguanylate cyclase
           [Halorhodospira halophila SL1]
 gi|121590417|gb|ABM62997.1| response regulator receiver modulated diguanylate cyclase
           [Halorhodospira halophila SL1]
          Length = 428

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 76/173 (43%), Gaps = 9/173 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           +L        + +R D L+GL N             +     + L  +  D+D+FK IND
Sbjct: 253 DLMELLREAREGARRDPLTGLHNRLYLDEIAEQLGETARRTQQPLGALVVDLDHFKSIND 312

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD V+  ++DQL         + R GGEEF    LG     A  L   +R  IE
Sbjct: 313 RLGHFGGDTVLKRVADQLRDTVRRADVLVRSGGEEFYILTLGIDTAGARTLGERIRNGIE 372

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             ++ +  G +I  + S G+A       +   +  AD A+Y AK+ GRNRV  
Sbjct: 373 TLEL-VYEGETITTSASVGVAVL-EGGSVEEALKAADLAMYEAKRQGRNRVAV 423


>gi|323491480|ref|ZP_08096663.1| PAS/GGDEF domain-containing protein [Vibrio brasiliensis LMG 20546]
 gi|323314264|gb|EGA67345.1| PAS/GGDEF domain-containing protein [Vibrio brasiliensis LMG 20546]
          Length = 679

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 7/171 (4%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-NEKLSIVFF--DIDYFKQINDNFGHPVGDKVIAF 157
            + + +D L+GL N   F   L    +   +++    DID FK IND+ GH +GDKVI  
Sbjct: 250 QEDAHLDSLTGLYNRFGFTKRLEQLIHNDTALIMLYLDIDNFKNINDSLGHHIGDKVIKE 309

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSI 216
           +S +L  +      +G LGG+EF        + + A +L+  +  ++  +Q       S 
Sbjct: 310 VSSRLKRLLPQHAILGHLGGDEFGIILPEPENNRMAEMLSERIISLV--NQPFDLHHFSK 367

Query: 217 HITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            +  S G +A          ++  AD A+Y AK  GRNR++ F+D  N   
Sbjct: 368 RLACSIGSVAYPGDGNDARILLQNADTAMYEAKDRGRNRLIKFNDQMNKEA 418


>gi|300919471|ref|ZP_07135971.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
 gi|300413457|gb|EFJ96767.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
          Length = 516

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 91/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 74  SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQANNNKVGVVYLDLDNFK 133

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 134 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 192

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    +TII  AD A+Y AK+ GR +   F
Sbjct: 193 --LTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSATIIRHADTAMYTAKEGGRGQFCVF 250

Query: 259 SDIENN 264
           +   N 
Sbjct: 251 TPEMNQ 256


>gi|92109707|ref|YP_571993.1| diguanylate cyclase [Nitrobacter hamburgensis X14]
 gi|91802789|gb|ABE65161.1| diguanylate cyclase (GGDEF domain) [Nitrobacter hamburgensis X14]
          Length = 613

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 8/170 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNF 146
               +R+  ++ +D L+GL N     + L          N+ +S +  D+D+FK+ ND++
Sbjct: 421 LRLRDRLRAMAMLDPLTGLANRRQLETVLESRLLEANRANQPISCIMLDVDHFKRFNDDY 480

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD V+  + D L           R GGEEF         + A + A + R  I++ 
Sbjct: 481 GHDAGDVVLRAVGDLLKRSTRDTD-AFRYGGEEFLLLMPDMGAEHALLRAEETRCKIKDL 539

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           Q+         IT S G A        S ++  AD AL  AK+SGRN VV
Sbjct: 540 QVEHGGRELGTITASLGTATAPDHCMFSQLVRTADAALLRAKESGRNCVV 589


>gi|89093689|ref|ZP_01166636.1| c-di-GMP phosphodiesterase A-related protein [Oceanospirillum sp.
           MED92]
 gi|89082085|gb|EAR61310.1| c-di-GMP phosphodiesterase A-related protein [Oceanospirillum sp.
           MED92]
          Length = 821

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 16/197 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
            I    +     +  ++ +L+  D L+G+ N   F+  L        +  +  ++++ D+
Sbjct: 349 LIMARDITARKAAEKQVYELAFFDTLTGMANRRLFMDRLSSSLVLHQTNGKYGAVLYMDL 408

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS------EQ 190
           D FK IND+ GH  GD ++  +S ++  +  T     R GG+EF      +        +
Sbjct: 409 DRFKTINDSLGHGAGDLLLKAISGRINSIIPTGATSARFGGDEFVILLPEAGIDKESCIE 468

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKK 249
            AA LA D+ +    +   +    S++ TIS GIA    +   S  I+ RAD ALY  K 
Sbjct: 469 AAAHLAEDIIQQF--TDPFLVDSHSLYCTISVGIALFPEQNSNSGDILRRADTALYRVKA 526

Query: 250 SGRNRVVCFSDIENNTC 266
             RN    +     ++ 
Sbjct: 527 KSRNGFQFYDPEMQSSA 543


>gi|315445392|ref|YP_004078271.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. Spyr1]
 gi|315263695|gb|ADU00437.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. Spyr1]
          Length = 770

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 105/228 (46%), Gaps = 9/228 (3%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           ++  A  I I N+  +++ LT       +++  L +VI+     ++       + + L+ 
Sbjct: 271 TLPYAGFIGITNLLSYHV-LTGNTLDPAVVMTTLVMVILVAARQVVAMGAQRRLTQRLYE 329

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +   ++     D L+GL N   F   L +   +    ++F D+D FK++ND FGH  GD+
Sbjct: 330 AQRGLAHQVHHDALTGLPNRLMFAQRLEAAVQHGDFVLIFVDLDDFKEVNDRFGHAAGDE 389

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  + ++L     +   + R+GG+EFA    G       ++A+ LR  +         G
Sbjct: 390 LLCAVGERLRRHVRSEDTLARIGGDEFAILIDGV-RDIPELIADRLR--VALRDPFPVHG 446

Query: 214 PSIHITISAGIAERCHK---EPISTIIYRADQALYVAKKSGRNRVVCF 258
            S+ +  S G+     +   +    ++ +AD ++Y  K+ G++  V +
Sbjct: 447 SSLRVRASMGLVRSGGEGGLQTPDDLLRQADISMYAGKRLGKDTAVVY 494


>gi|313681790|ref|YP_004059528.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313154650|gb|ADR33328.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 312

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 12/178 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQ 141
           + KEL  + + ++     D L+ + N   F   + S  E  +       ++  DID FK 
Sbjct: 139 LTKELHEARSALT----TDPLTKVGNRQGFSEDIESSIEAGASKQLSMVLMMMDIDNFKF 194

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +G+  GDKV+ F++  +  +  +   V R GGEEFA         +A  +A+ +R 
Sbjct: 195 LNDEYGYVAGDKVLYFIAQTIKGMIRSGDKVYRFGGEEFAVVLNRCDVAQAQAIADKIRL 254

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            IE S++ I SG ++H+T+S G+      + +  +I RAD+ALY AKKS +N  V F 
Sbjct: 255 KIEKSRL-IYSGKNVHVTVSVGVTVHQAGDTLDDLIGRADKALYCAKKSNKNCTVLFD 311


>gi|302879572|ref|YP_003848136.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
            capsiferriformans ES-2]
 gi|302582361|gb|ADL56372.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
            capsiferriformans ES-2]
          Length = 1009

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 20/195 (10%)

Query: 86   SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
            +G  + E      R+ QL+  D L+ L N       L              +++F D+D 
Sbjct: 812  TGLNISERKEMEERVHQLAFYDPLTSLPNRRLLNDRLSQAMSAGERSGLYGALMFLDLDN 871

Query: 139  FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ------EA 192
            FK +ND  GH VGD ++   + +L         V R GG+EF                +A
Sbjct: 872  FKPLNDTHGHGVGDLLLIEAASRLKKCVRGMDTVARFGGDEFVVMLSELDAGKSDATVQA 931

Query: 193  AILANDLRKIIENSQI------NISSGPSIHITISAGIAER-CHKEPISTIIYRADQALY 245
             ++A  +   +    +      +  S    H T S G+     H      I+ +AD A+Y
Sbjct: 932  RLVAEKILAALSEPYVLKISTSDEFSSVEHHCTASIGVTVFLNHVTRQDDILKQADDAMY 991

Query: 246  VAKKSGRNRVVCFSD 260
            VAK +GRN +    +
Sbjct: 992  VAKGAGRNSIRFHEE 1006


>gi|294492300|gb|ADE91056.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli IHE3034]
          Length = 661

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     LA+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEALASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|261324330|ref|ZP_05963527.1| diguanylate cyclase/phosphodiesterase [Brucella neotomae 5K33]
 gi|261300310|gb|EEY03807.1| diguanylate cyclase/phosphodiesterase [Brucella neotomae 5K33]
          Length = 709

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFF 134
           L+G +    + E      R+  ++  D L+GL N + F   +GS  +        ++ + 
Sbjct: 255 LIGLV--EDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHVGSLLKKGSDCDPFALFYL 312

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK +ND+  H  GD+++  ++ +L  +     F+ RLGG+EFA      +  + A+
Sbjct: 313 DIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGTLAQIAM 372

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
            A+ +    ++    +  G +  +T S GIA+   H +    ++  AD ALY +K  GR 
Sbjct: 373 FADRVLSAFQD--PFVLGGNAEFVTCSMGIAQAPLHGDNPDVLMRNADLALYASKSGGRR 430

Query: 254 RVVCFSD 260
               + D
Sbjct: 431 TFRFYQD 437


>gi|228911974|ref|ZP_04075700.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200]
 gi|228847668|gb|EEM92596.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200]
          Length = 785

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 10/205 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           +L   +++V I I       Y+    +  +    + I+ L+  D ++ + N   F   L 
Sbjct: 318 MLFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELD 377

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     +K  +++ D++ FK IND  GH +GD+V+  ++ +        + + R+G
Sbjct: 378 RSIKRVQKTQDKFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPTIPLARIG 437

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           G+EFA      +EQ+   L   L  I E  +  + +  S ++++S GIA         +T
Sbjct: 438 GDEFAIIVHNQTEQQLLNLCKTLFLITE--EPFVVNQHSFYLSLSIGIAVYPFGGINTTT 495

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++  AD A+Y AK+ G N V  + +
Sbjct: 496 LLQHADIAMYSAKEKGNNAVCMYDE 520


>gi|124267400|ref|YP_001021404.1| GGDEF domain-containing protein [Methylibium petroleiphilum PM1]
 gi|124260175|gb|ABM95169.1| GGDEF domain containing protein [Methylibium petroleiphilum PM1]
          Length = 641

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 86/176 (48%), Gaps = 10/176 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           +    + +   +  +++ ++R D L+ L N   F   L             +++V+ D+D
Sbjct: 455 LITRDIDDRKRAEAQLADIARRDALTQLPNRRHFEEQLELAAARAQRSGRPMALVYLDLD 514

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILA 196
            FK++ND  GH  GD+++  ++ +L         V RLGG+EF      S + ++   L 
Sbjct: 515 GFKRVNDTLGHEAGDRLLISVALRLTACVRVTDLVSRLGGDEFTVILEESGTAEDRLQLC 574

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             +  + + S+ ++ +G +   T S G+A     E + ++  RAD A+Y AK++G+
Sbjct: 575 ERI--LAQLSEPHVLAGQATVSTPSLGMAVYLPGESLDSLRKRADGAMYDAKRAGK 628


>gi|332091555|gb|EGI96638.1| diguanylate cyclase domain protein [Shigella boydii 5216-82]
          Length = 460

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 281 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 339 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 399 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 456


>gi|298292199|ref|YP_003694138.1| diguanylate cyclase [Starkeya novella DSM 506]
 gi|296928710|gb|ADH89519.1| diguanylate cyclase [Starkeya novella DSM 506]
          Length = 398

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 61/210 (29%), Positives = 95/210 (45%), Gaps = 18/210 (8%)

Query: 64  ILVENLSLVIISITISLLL---GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           IL  N  L  I +   LLL   G+    +++E      R    ++ D L+GL N   F+ 
Sbjct: 180 ILFSNPRLAWIGLFAMLLLICVGFTLVLLVRERVEL--RYRSAAQHDELTGLFNRRGFME 237

Query: 121 SL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                      ++++  D+D FKQ+ND FGH  GD+V+   ++ L++         R+GG
Sbjct: 238 EAVPASRKGGPMALMVLDLDRFKQVNDQFGHAAGDRVLVLFAEVLLLELRPGDVAARIGG 297

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIA-----ERCHKE 231
           EEFAA       + A  +A  +R         +  G  ++  ++S G+A     +   +E
Sbjct: 298 EEFAALLPDVRPETARQIAERIRGSFRQELNRLKLGAGTLECSVSIGLALGAAPQGPARE 357

Query: 232 PISTII----YRADQALYVAKKSGRNRVVC 257
            I   I     RAD ALY AK  GRNR+  
Sbjct: 358 EIEAAILRNMARADAALYEAKAQGRNRIEV 387


>gi|283784201|ref|YP_003364066.1| signal transduction protein [Citrobacter rodentium ICC168]
 gi|282947655|emb|CBG87210.1| putative signal transduction protein [Citrobacter rodentium ICC168]
          Length = 366

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 106/233 (45%), Gaps = 11/233 (4%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE 92
           +  S+   +++ +A +    +       +   LV  L+L ++ +   LL   +S  I   
Sbjct: 135 LRLSVIGLSMMAVACLVTLQLTGGSLILMSIPLVGWLTLPVM-VIYPLLFARLSYQIATR 193

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
           L     R+  +S  D ++G+ N   +   L          + + +++  DID+FK IND 
Sbjct: 194 LAEHKRRLQIMSSRDGMTGVYNRRHWEQLLRNEFELCRRQHRECTLLIIDIDHFKDINDT 253

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH VGD+ I  L+ QL     +   +GR GG+EFA    G+  + A    + + + +  
Sbjct: 254 WGHDVGDEAIQALTRQLRTTLRSSDVIGRFGGDEFAVIMCGTPAESAIAAMSRVHEGLRA 313

Query: 206 SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
            +  ++  P + + IS G+A    +       +  AD ALY AK +GRNR   
Sbjct: 314 LR--LACAPQVILHISVGVAPLTPQFGHYREWLKSADLALYKAKNAGRNRTEV 364


>gi|189352742|ref|YP_001948369.1| signal transduction GGDEF/EAL domain protein [Burkholderia
           multivorans ATCC 17616]
 gi|189336764|dbj|BAG45833.1| signal transduction GGDEF/EAL domain protein [Burkholderia
           multivorans ATCC 17616]
          Length = 749

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 13/177 (7%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQIND 144
             +  ++  L+  D L+GL N       +              +++I+F D+  FK++ND
Sbjct: 313 REAQQQLRYLATRDALTGLYNRRWLSDRMRELFGGRDPAGGPARVAILFLDLVGFKKVND 372

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD ++  ++ +L         + R+GG+EF        + EA  LA   R++I+
Sbjct: 373 TAGHDAGDALLRSVAARLAACMRGRHALTRVGGDEFVILVDDCDDPEA--LAALAREVID 430

Query: 205 N-SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++    +     + +S GI+      +  +T++  AD A+Y AK+ GRN    F+
Sbjct: 431 AIAKPFAVANNEYWLGVSIGISIAPRDGDDAATLMRNADSAMYDAKQRGRNHFTFFT 487


>gi|189425047|ref|YP_001952224.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Geobacter lovleyi SZ]
 gi|189421306|gb|ACD95704.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Geobacter lovleyi SZ]
          Length = 435

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 13/186 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA----FISSL---GSYNEKLSIVFFDIDY 138
           S + +         I  ++  D L+GL N          ++      + +++++F D+D 
Sbjct: 243 SFTDISRQKTVEAEIRHVANHDYLTGLPNRMYVQVVLEQTMTLARREHTEIAVMFIDLDR 302

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILAN 197
           FK IND FGH VGD ++  ++ +L         V RLGG+EF        +      +A 
Sbjct: 303 FKNINDTFGHAVGDGLLIQVAARLKQSVRESDLVARLGGDEFVVVMTSHLTVNGEITVAQ 362

Query: 198 DLRKIIENSQINISSGP-SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
            +   +EN  +    G  ++H   S GI+        +  ++  AD A+Y  K+SGR + 
Sbjct: 363 KI---LENLSLPYQVGELTLHSPPSIGISRYPFDALSVEELMKHADMAMYQVKQSGRGQY 419

Query: 256 VCFSDI 261
             F   
Sbjct: 420 RFFEPA 425


>gi|119945537|ref|YP_943217.1| diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37]
 gi|119864141|gb|ABM03618.1| diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37]
          Length = 598

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 19/193 (9%)

Query: 91  KELFISYN-------RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
           KEL I+         +++ L+  D L+GL N    I  L              +++F D+
Sbjct: 145 KELAIANEEKGKLTEKLNDLAFYDTLTGLPNRRILIDRLHHALASNVREGCDSAVMFVDL 204

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK IND  GH  GD ++  ++ +L         V RLGG+EF        ++     A
Sbjct: 205 DHFKDINDTLGHGFGDLLLIQIAQRLASCLRKGDTVARLGGDEFVLILENLDKKTIEAAA 264

Query: 197 NDLRK----IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSG 251
                    +   ++         + T+S G     H       ++ +AD A+Y AK++G
Sbjct: 265 KANAIADKILAALNKPYQLDMHKCYSTVSIGAVFFDHQGNTAEDLLKQADIAMYQAKQAG 324

Query: 252 RNRVVCFSDIENN 264
            N++  F+     
Sbjct: 325 GNQIRFFNPEMQE 337


>gi|149186877|ref|ZP_01865187.1| sensory box/GGDEF family protein [Erythrobacter sp. SD-21]
 gi|148829544|gb|EDL47985.1| sensory box/GGDEF family protein [Erythrobacter sp. SD-21]
          Length = 749

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 10/181 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFK 140
            S +     +  RI+ ++  D L+ L N   F +SL           ++ +++ D+D FK
Sbjct: 311 ASDVTAQREAEARINHMAHYDALTNLANRYLFNASLDHALNRLLDRHRICVLYLDLDQFK 370

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDL 199
            IND  GH VGD ++  +  +L         V RLGG+EFA      +    A  +A+ +
Sbjct: 371 GINDTLGHAVGDALLREVGKRLENTLNGRGLVARLGGDEFAVLLQDENLDHVAMTIAHRI 430

Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + + +    +  G  I I  S G+A         S ++  AD ALY AK+ GR +VV F
Sbjct: 431 MENLRD--PYVIEGSEICIGTSIGVAFADPQGPSASDLMKHADLALYRAKELGRGKVVVF 488

Query: 259 S 259
            
Sbjct: 489 E 489


>gi|119961921|ref|YP_948931.1| response regulator/GGDEF domain-containing protein [Arthrobacter
           aurescens TC1]
 gi|119948780|gb|ABM07691.1| response regulator/GGDEF domain protein [Arthrobacter aurescens
           TC1]
          Length = 302

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 82/190 (43%), Gaps = 8/190 (4%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------ 127
            S+ I LL      S+  +L    + +++ +R D L+ L N       LG+ +       
Sbjct: 108 FSLHIRLLAAQRITSLHADLARYRSALTEQARTDPLTKLHNRLKLAEDLGTLHGGGTPDL 167

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
              +   D+D FK  ND +GH  GD  +  ++  L         V R GGEEF       
Sbjct: 168 DYCLAMVDVDNFKSYNDIYGHQAGDAALISIASTLAGEVRKSDGVYRFGGEEFLLLLRDQ 227

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALY 245
              +A  +   +R  ++  +I  S  P   +TISAGI+            ++  AD ALY
Sbjct: 228 RAADARTVMERVRTAVQELRIEHSGDPDGVLTISAGISAFTDGHRAGTEQLLREADLALY 287

Query: 246 VAKKSGRNRV 255
            AK SGRNRV
Sbjct: 288 AAKASGRNRV 297


>gi|150377268|ref|YP_001313863.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae
           WSM419]
 gi|150031815|gb|ABR63930.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae
           WSM419]
          Length = 729

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 14/236 (5%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG----YISGSILKELFI 95
           A ++  +   + Y    PF     ++     +++IS  +   L      +     + L  
Sbjct: 236 APIVRSSGEPIGYFSWLPFRPGAAVMKATAPVLLISGLLLFTLTSGLSVVLRRRSRRLQE 295

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHP 149
           S   ++ L+R D L+GL N ++F  SL         ++  ++++ D+D FKQ+ND  GHP
Sbjct: 296 SQAELNHLARHDPLTGLANRASFNQSLAQAVASSAADQANALLYLDLDRFKQVNDTLGHP 355

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+++  ++ +L+        + R+GG+EF      + ++E   L + L   I   Q  
Sbjct: 356 VGDRLMVAVAKRLMETASAG-VISRIGGDEFTIVVERTRQEEVEKLCDSLIAAIR--QPF 412

Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
              G  I I +S G+A     +     I  +AD ALY AK +GRNR   F    + 
Sbjct: 413 EIDGQPILIGLSIGVAVATGNDADPVEITRKADIALYHAKSAGRNRYAVFGPHMDE 468


>gi|152983535|ref|YP_001347829.1| hypothetical protein PSPA7_2463 [Pseudomonas aeruginosa PA7]
 gi|150958693|gb|ABR80718.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 341

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 66/188 (35%), Positives = 97/188 (51%), Gaps = 12/188 (6%)

Query: 80  LLLGYISGSILKE----LFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEK- 128
           L  GY+    L E    L     R  + S +D L+ L N + F +       L   NE+ 
Sbjct: 153 LAEGYLQLRSLTEHTRFLRQEIGREQRRSLLDPLTQLWNRAGFDALHRHELELAQANEQN 212

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
             I++ DID+FK+IND +GH  GD V+   + +L         + R GGEEF A      
Sbjct: 213 AGIIYSDIDHFKRINDTYGHKAGDTVLREAASRLRAALRPEDLLARFGGEEFVALVRVRD 272

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
             E +++AN +R+++E + I+  +G  + +TISAG     H E +   + RAD ALY AK
Sbjct: 273 HLELSVVANRIRELMEATPIDC-AGTPVTMTISAGCTLARHAEELERSLARADAALYEAK 331

Query: 249 KSGRNRVV 256
           + GRNRVV
Sbjct: 332 RGGRNRVV 339


>gi|66046884|ref|YP_236725.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63257591|gb|AAY38687.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 820

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 18/192 (9%)

Query: 83  GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           G ISG++L    ++  +     +S  +  D L+GL+N S F   L               
Sbjct: 348 GVISGAVLVLHDMTQEQQYIADLSWQAAHDPLTGLVNRSEFERRLQRVLDEDCGQGRSHC 407

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F D+D FK +ND  GH  GD+++  L   L         + RLGG+EF    +    +
Sbjct: 408 LMFLDLDQFKLVNDTGGHAAGDELLRQLCRALPQGLRDGDTLARLGGDEFGVLLVDCPAE 467

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI---IYRADQALYVA 247
            A  +A  LR++++     +  G     T+S G+      +  +++   +  AD A Y+A
Sbjct: 468 TALDMAEALREVVQRLHF-MWKGRPFMTTVSIGLVHL--GDTPASLEGSLSAADMACYMA 524

Query: 248 KKSGRNRVVCFS 259
           K+ GRNRV  +S
Sbjct: 525 KERGRNRVQAYS 536


>gi|17230662|ref|NP_487210.1| hypothetical protein alr3170 [Nostoc sp. PCC 7120]
 gi|17132265|dbj|BAB74869.1| alr3170 [Nostoc sp. PCC 7120]
          Length = 1021

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 12/190 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDY 138
            + + E      ++   +  D L+GL N   F+  L    ++         +++F D+D 
Sbjct: 573 ATDITERKNMEEKLVYHAFYDDLTGLPNRVLFMDRLAQTIDQAKESPNDLFAVLFLDLDR 632

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAN 197
           FK +ND+  H VGD+++   + +L         + RLGG+EF        S  +A  +A 
Sbjct: 633 FKVVNDSLSHLVGDQLLVSFAQRLQSCLQPEDTLARLGGDEFTILLSHIQSIDDATRIAE 692

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            + + +     N+S G  +  T+S GIA   +     + ++  AD ALY AK+ G+   +
Sbjct: 693 KIHQAL-KLPFNLS-GYEVFTTVSIGIALSTNDYVQAADLLRDADTALYCAKEQGKAWHI 750

Query: 257 CFSDIENNTC 266
            F     +  
Sbjct: 751 VFDSTMYDRA 760


>gi|94314577|ref|YP_587786.1| putative diguanylate cyclase [Cupriavidus metallidurans CH34]
 gi|93358429|gb|ABF12517.1| putative diguanylate cyclase (GGDEF domain) [Cupriavidus
           metallidurans CH34]
          Length = 395

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 107/259 (41%), Gaps = 23/259 (8%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL------E 62
             I L     L   S     IY+     +F+A  + +    L      P           
Sbjct: 132 FGIALAQLGGLRRGSVADRAIYW-----VFVAFTVNLGLRLLLSTSAPPNTDECGRAFSS 186

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y     +   + ++  SL+L      +  E+     RI      D L+ L N  +F    
Sbjct: 187 YWTYFQVGQTLFNVFFSLVL------LGSEIHALIERIQHERDTDALTRLHNRRSFEEIA 240

Query: 123 GSYNEKL-----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                +       ++  D+D+FK INDN GH  GD ++   +  +  V G     GRLGG
Sbjct: 241 RETISRANGGVPGLILVDLDFFKLINDNHGHASGDAILVEFARIVRRVVGARGIAGRLGG 300

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EEFA     ++ +EA  +A ++R  +E ++       S  +T S G+A     E +  ++
Sbjct: 301 EEFAVLLPRTTGEEAIHIAEEIRATLERARFETLPD-SPRVTASFGVAVWQPPESLDALM 359

Query: 238 YRADQALYVAKKSGRNRVV 256
            RAD  LY AK+SGRNRV 
Sbjct: 360 SRADGLLYTAKRSGRNRVH 378


>gi|332342881|gb|AEE56215.1| RNase II stability modulator protein [Escherichia coli UMNK88]
          Length = 661

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|330953892|gb|EGH54152.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 341

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 56/215 (26%), Positives = 100/215 (46%), Gaps = 14/215 (6%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILK----ELFISYNRISQLSRIDCLS 110
             P++   +  +    ++I+++ +  +L Y     L     EL I+ N +  ++  D L+
Sbjct: 105 FAPWWAYAHRSMTITGIIILALVLLGVLLYRQIQQLINAEGELNIARNELEIIAHTDSLT 164

Query: 111 GLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL- 162
            L N   F ++L     +       ++I+  DID+FKQ ND +GH  GD  +  ++  + 
Sbjct: 165 QLANRRCFDAALQQEGGRASRNTATIAIILLDIDWFKQYNDTYGHLQGDDCLKQVAGLIG 224

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             +        R GG EF      +    A  +A  +R  +E ++I  S+ P   +TIS+
Sbjct: 225 NSLDRAGDIAARYGGGEFVILLPETDLAGALKIAEKIRSSVETTRIEHSASPLGKLTISS 284

Query: 223 GIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G+       K+  +  +  AD+ LY+AK  GRNRV
Sbjct: 285 GVVSINAAEKDGHTAALAEADRLLYLAKTKGRNRV 319


>gi|288917029|ref|ZP_06411400.1| diguanylate cyclase [Frankia sp. EUN1f]
 gi|288351569|gb|EFC85775.1| diguanylate cyclase [Frankia sp. EUN1f]
          Length = 510

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 97/230 (42%), Gaps = 21/230 (9%)

Query: 46  ANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI---SQ 102
           A I LF  G++    L+    + +  +   I+  L+L        +      +R      
Sbjct: 291 APIGLFIAGVSDLIALDEDYRDFVEAIAGQISFGLMLA-------RTREAERDRAASARH 343

Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            S  D L+GL N ++F+ ++G            ++++F D+D FK +ND  GH  GD ++
Sbjct: 344 SSLHDALTGLPNRTSFLKNVGRALLQSQRGGGAVAVLFIDLDGFKAVNDTLGHRAGDDLL 403

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++ +L         V R  G+EFA   +  +   +      +      +     SG +
Sbjct: 404 CEVASRLRRTTRPGDVVARFAGDEFAVLCVDVASIGSV---EQIAGRAAEALALARSGGA 460

Query: 216 IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             +T S G+A    +      +++ AD A+Y AK+ G  R + + D  ++
Sbjct: 461 SAVTASVGVALSGPELLDPEDLLHAADIAMYAAKRQGGGRFLLYDDSMSS 510


>gi|228985623|ref|ZP_04145776.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228774018|gb|EEM22431.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 785

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 96/205 (46%), Gaps = 10/205 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           IL   +++V I I       Y+    + ++      I+ L+  D ++ + N   F   L 
Sbjct: 318 ILFWYVTIVPIMIEGQAFGSYVMVKDITKMKQQQEEINYLAFHDTVTEIGNRIFFQQELD 377

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     +K  +++ D++ FK IND  GH +GD+V+  ++ +        + + R+G
Sbjct: 378 RSIKRAQKTKDKFGLLYIDLNRFKTINDTLGHSIGDRVLKEVTKRFRTCLSPSLPLARIG 437

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           G+EFA      +E++   L   L +I E  +  + +  S ++++S GIA         +T
Sbjct: 438 GDEFAIIVHNRTEKQLLDLCETLFRITE--EPFVVNQHSFYLSLSIGIAVYPFGGINTTT 495

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++  AD A+Y AK+ G N V  + +
Sbjct: 496 LLQHADIAMYSAKEKGNNAVCMYDE 520


>gi|193067090|ref|ZP_03048059.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli E110019]
 gi|192959680|gb|EDV90114.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli E110019]
          Length = 661

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|126657209|ref|ZP_01728375.1| PleD-like protein [Cyanothece sp. CCY0110]
 gi|126621480|gb|EAZ92191.1| PleD-like protein [Cyanothece sp. CCY0110]
          Length = 613

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 61/212 (28%), Positives = 90/212 (42%), Gaps = 12/212 (5%)

Query: 60  GLEYILVENLSLVIISI--TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           G+ YI   NLS +          +  YI+ S L  L +  + + + S  D L+GL N   
Sbjct: 398 GILYISASNLSKLTPETENLAETVSDYITLS-LANLKLQED-LKEQSVRDSLTGLFNRRY 455

Query: 118 FISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
               L         Y   + ++  DID+FK INDN+ H +GD V+  +   L        
Sbjct: 456 LYEFLTKEVAKSQRYKTNIGVILMDIDHFKPINDNYSHGLGDVVLEEIGQFLSNNIRESD 515

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-H 229
              R GGEEF      +S +     A  LRK I+             +T+S G+A    H
Sbjct: 516 IACRYGGEEFILIFPHASLENTYQRAEALRKKIKCLNFRYQKYYLNSVTVSVGVANFPQH 575

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                  ++ AD ALY AK  GR+R + +S+ 
Sbjct: 576 GVTGEEAVHHADLALYAAKAQGRDRTIIYSEE 607


>gi|120609840|ref|YP_969518.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1]
 gi|120588304|gb|ABM31744.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1]
          Length = 1120

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 21/205 (10%)

Query: 78  ISLLLGYISG-----SILKELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYN 126
           I  + G+++G       + +   +  +I  L+  D L+GL N    +       +    N
Sbjct: 643 IRDMHGHVTGLLSVSRDITDRKKAEQQIELLAFFDALTGLPNRRLLLDRLQRAGAACQRN 702

Query: 127 EKL-SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           EKL +++F D+D FK +ND  GH +GD+++  ++ +L     T   V R GG+EF     
Sbjct: 703 EKLGALLFIDLDNFKDLNDTLGHDMGDRLLVQVAQRLQECVRTSDTVARFGGDEFVVMLE 762

Query: 186 GSSEQ------EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIY 238
           G          +A  +A  L   + N    + +      T S GI     +   +  ++ 
Sbjct: 763 GLDADTALAALQAEQVAEKLLAQL-NRPFEMGAQQHYS-TPSIGITLFGDQRRTVDELLK 820

Query: 239 RADQALYVAKKSGRNRVVCFSDIEN 263
           RAD A+Y AK +GRN    F     
Sbjct: 821 RADLAMYQAKAAGRNTQRFFDPDMQ 845


>gi|260777598|ref|ZP_05886491.1| sensory box/GGDEF family protein [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605611|gb|EEX31896.1| sensory box/GGDEF family protein [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 621

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 58/189 (30%), Positives = 81/189 (42%), Gaps = 18/189 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---------SYNEKLSIVFFDI 136
           S   +       NR+ ++S  D ++GL N   F   +          S+ E       DI
Sbjct: 440 SFVDISHRKELENRLREMSEKDSMTGLWNRRKFDQEMAAQCAKSKRYSHAEPTCFAIVDI 499

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK++ND  GH  GDK+I  +   L        F+ R+GGEEFA     +  QEA I+ 
Sbjct: 500 DHFKRVNDRLGHDEGDKIIKSVGTVLSDHLRETDFIARIGGEEFAIIMPHTRIQEAEIVT 559

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           N LR  +       S      IT+S G+ +      +     RAD ALY +K  GRN V 
Sbjct: 560 NRLRTSV-------SLQHDEQITVSVGVTDM--DGSVENTYKRADVALYESKSLGRNCVS 610

Query: 257 CFSDIENNT 265
                E  T
Sbjct: 611 ILDSEEMGT 619


>gi|218295658|ref|ZP_03496454.1| diguanylate cyclase [Thermus aquaticus Y51MC23]
 gi|218243817|gb|EED10344.1| diguanylate cyclase [Thermus aquaticus Y51MC23]
          Length = 318

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 73/167 (43%), Gaps = 19/167 (11%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            + +    L+GL N  A   +L           +  +++  D+D FK++ND  GH  GD 
Sbjct: 158 REQALTCPLTGLPNRRALEMALEREAARVERGEKPFALILLDLDDFKRVNDERGHQEGDG 217

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  ++  L         VGR GGEEF      +    A  LA  LR+ I          
Sbjct: 218 LLRRVAQYLKTHVRQGDLVGRWGGEEFLVLLPATDLLGAERLAERLREGIAA-------- 269

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             + +T S G+A       +  +  RADQALY AK  G+NRV   S+
Sbjct: 270 --LGVTASFGVALYQG--DLQGLFLRADQALYQAKALGKNRVARASE 312


>gi|148976697|ref|ZP_01813384.1| c-di-GMP phosphodiesterase A-related protein [Vibrionales bacterium
           SWAT-3]
 gi|145964048|gb|EDK29306.1| c-di-GMP phosphodiesterase A-related protein [Vibrionales bacterium
           SWAT-3]
          Length = 679

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+ L N   F   L  +   +  + +++ DID FK IND+ GH +GDKVI  ++ 
Sbjct: 253 AYIDALTKLYNRVGFTKRLEQFIHNDTPVVMMYLDIDNFKNINDSLGHHIGDKVIKEVAS 312

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           +L  +      VG LGG+EF          + A  LA  +  +I  +Q       S  + 
Sbjct: 313 RLKRLLPRQAVVGHLGGDEFGIILPEPEHPRTAETLAEKIISLI--NQPFDLHHFSKRLA 370

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +           ++  AD A+Y AK  GRNR++ F++  N   
Sbjct: 371 CSIGSVRFPQDGTDARILLQNADTAMYEAKDRGRNRLIKFNEQMNKEA 418


>gi|78777468|ref|YP_393783.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78498008|gb|ABB44548.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM
           1251]
          Length = 318

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 91/177 (51%), Gaps = 8/177 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDY 138
           +  ++ EL      + + S +D L+ + N  +  S L           + L ++  DID 
Sbjct: 138 ANLVITELHQKVKILEETSNLDPLTKVFNRRSLSSYLQEVCSNKSLPYDDLHVMMLDIDN 197

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND +GH  GDK++ F+S+ L         + R GGEEF      +S+ +   +AN 
Sbjct: 198 FKSINDKYGHIAGDKILIFISNILRKTLRDGDKIFRYGGEEFTIVINRNSDDQCEQIANR 257

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           L  +I ++ + I  G  I +T S G+ +    +   +++ RAD+ALYV+KKSG+N V
Sbjct: 258 LLHLISSNNL-IYMGERISVTASIGVTKLKEHDTPDSLLSRADKALYVSKKSGKNMV 313


>gi|323185999|gb|EFZ71356.1| diguanylate cyclase domain protein [Escherichia coli 1357]
          Length = 453

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 274 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 331

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 332 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 391

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 392 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 449


>gi|315637576|ref|ZP_07892783.1| diguanylate cyclase/phosphodiesterase [Arcobacter butzleri JV22]
 gi|315478167|gb|EFU68893.1| diguanylate cyclase/phosphodiesterase [Arcobacter butzleri JV22]
          Length = 851

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 74/164 (45%), Gaps = 8/164 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
             +   +  D L+ L N   F       I     +N   +++  D D FK INDNFGH  
Sbjct: 427 QDLEYYAARDPLTDLFNQRVFNDMMRYEIKRAQRHNYSFALMVIDCDNFKPINDNFGHSF 486

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD ++  ++  L         V R GG+EF       +E+EA I+AN + K +   +I  
Sbjct: 487 GDTLLQTVASTLKKEKRDEDIVARYGGDEFTIILPECTEKEAMIVANRISKKMATEKIVA 546

Query: 211 SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
             G +I ITIS GI     H      +   AD  +Y AK+ G+N
Sbjct: 547 PDGSNIGITISIGICVYPTHTTSQKDMFIIADSMMYQAKEEGKN 590


>gi|331677068|ref|ZP_08377764.1| protein gmr [Escherichia coli H591]
 gi|331075757|gb|EGI47055.1| protein gmr [Escherichia coli H591]
          Length = 661

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|293433647|ref|ZP_06662075.1| gmr [Escherichia coli B088]
 gi|291324466|gb|EFE63888.1| gmr [Escherichia coli B088]
          Length = 661

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|218700119|ref|YP_002407748.1| putative diguanylate cyclase YddV [Escherichia coli IAI39]
 gi|293409835|ref|ZP_06653411.1| conserved hypothetical protein [Escherichia coli B354]
 gi|218370105|emb|CAR17886.1| putative diguanylate cyclase YddV [Escherichia coli IAI39]
 gi|284921376|emb|CBG34444.1| putative signal transduction protein [Escherichia coli 042]
 gi|291470303|gb|EFF12787.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 460

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 281 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 339 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 399 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 456


>gi|297582613|ref|YP_003698393.1| diguanylate cyclase [Bacillus selenitireducens MLS10]
 gi|297141070|gb|ADH97827.1| diguanylate cyclase [Bacillus selenitireducens MLS10]
          Length = 301

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 11/175 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
           E+    ++ +  +  D L+ + N    +  L +         +   ++  DID+FK +ND
Sbjct: 127 EMKRLLDQANLAAVTDELTRVYNKRYILEKLPADLTLALAEQQPFGLIVADIDHFKSVND 186

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD+++   +  L         +  R GGEEF     G        +A  +R  I
Sbjct: 187 TYGHLAGDQILREFAAVLKDTCLDQADWTARFGGEEFVVCLPGKDRDTVLAVAERMRARI 246

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256
           E  Q+    G +I +T S G+      +     T++ RADQ LY +K++GRNRV 
Sbjct: 247 EE-QVFHYDGQAITLTSSFGVYALAPGDVIDYETLLKRADQHLYQSKRTGRNRVT 300


>gi|331682958|ref|ZP_08383566.1| diguanylate cyclase YddV (DGC) [Escherichia coli H299]
 gi|331079779|gb|EGI50969.1| diguanylate cyclase YddV (DGC) [Escherichia coli H299]
          Length = 460

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 281 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 339 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 399 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 456


>gi|251773040|gb|EES53596.1| diguanylate cyclase/phosphodiesterase [Leptospirillum
           ferrodiazotrophum]
          Length = 702

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 12/201 (5%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------- 123
           LVI SI  S+L   + GS+ K ++     +   +  D L+GL N   F   L        
Sbjct: 253 LVIESIITSIL--NVVGSV-KAIYRYTKDLEYYAVRDPLTGLFNQRVFWELLAYEIGRSQ 309

Query: 124 -SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
              N+  S++  D+D FK+IND FGH  GD+ +  ++  +         V R GG+EFA 
Sbjct: 310 RHGNQPFSVMIIDVDDFKKINDTFGHTFGDEFLQKIAGVIQATARKEDIVARYGGDEFAV 369

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRAD 241
               ++ + A  +A  +R   +   +    G     ++S GIA    H      +   AD
Sbjct: 370 ILPEAASEHAVAMAKRIRAGFQRFSLESPEGVRAKSSVSIGIASWPEHALEPKDLFLVAD 429

Query: 242 QALYVAKKSGRNRVVCFSDIE 262
             +Y AK  G+N     +D +
Sbjct: 430 NMMYRAKAHGKNGHCLPTDAD 450


>gi|254503168|ref|ZP_05115319.1| hypothetical protein SADFL11_3207 [Labrenzia alexandrii DFL-11]
 gi|222439239|gb|EEE45918.1| hypothetical protein SADFL11_3207 [Labrenzia alexandrii DFL-11]
          Length = 722

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 60/186 (32%), Positives = 96/186 (51%), Gaps = 13/186 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           K L  +   + +++ ID L+G++N  AF+ +               + V  DID FK+IN
Sbjct: 539 KALMQAKINLERIASIDDLTGIMNRRAFLEAANTEVARYRRTQRLFTAVMIDIDNFKRIN 598

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KI 202
           D  GH VGD+V+   +  +          GR+GGEEF      ++ ++A +++  LR KI
Sbjct: 599 DRCGHAVGDEVLKKFTGIIGGALRAVDVFGRVGGEEFCMILHNTTMEDAMLVSQRLREKI 658

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD- 260
           +E  Q +        IT S G+A    ++   ST++ RAD ALY AK++GRNR V F+  
Sbjct: 659 VEECQFDNVDQA---ITCSMGLASIAREDVEFSTLMQRADTALYTAKETGRNRCVEFTPA 715

Query: 261 IENNTC 266
           +E +  
Sbjct: 716 LEPDAA 721


>gi|126738872|ref|ZP_01754568.1| hypothetical protein RSK20926_03109 [Roseobacter sp. SK209-2-6]
 gi|126720053|gb|EBA16760.1| hypothetical protein RSK20926_03109 [Roseobacter sp. SK209-2-6]
          Length = 789

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 101/205 (49%), Gaps = 13/205 (6%)

Query: 67  ENLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSA---- 117
           E+LSL++ S  I    G   G++L      +          L+  D L+GL N       
Sbjct: 318 EDLSLLVRSGPIRDEHGLYLGTLLLASDHSDQARQAEWARYLAEHDSLTGLPNRRLMEQT 377

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
           F S L    E++SI+  D+D+FK IND  GHP GD ++  ++ +      T +   RLGG
Sbjct: 378 FQSWLQEEAEEVSILLADLDHFKLINDTLGHPAGDALLQVVAQKFKACASTYVLAARLGG 437

Query: 178 EEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-IST 235
           +EFA    G SS +    +A  L  +IE SQ    +G  +H  +SAGIA     +   S 
Sbjct: 438 DEFAILVKGASSLERLTNIAERL--VIEMSQPQEINGQVLHTGMSAGIATLSGPDSKPSE 495

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
            I RAD ALY AK++GR  V  F +
Sbjct: 496 GIRRADLALYEAKRAGRGTVEVFHE 520


>gi|146305686|ref|YP_001186151.1| diguanylate cyclase [Pseudomonas mendocina ymp]
 gi|145573887|gb|ABP83419.1| periplasmic/7TM domain sensor diguanylate cyclase [Pseudomonas
           mendocina ymp]
          Length = 627

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 11/171 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQIN 143
           + L      +   +  D L+ L N    +            + E ++++  D+D+FK IN
Sbjct: 429 ERLCQRERELEHAAFNDPLTELPNRRYLVERCESALAHAERHGESVALLLIDLDHFKPIN 488

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKI 202
           D FGH  GD ++  ++ +L         V RLGG+EFAA   GS  + +A  +A  L  +
Sbjct: 489 DRFGHAAGDMMLQVIAKRLREHVRAGDAVARLGGDEFAALIGGSDAETQAREIAARL--L 546

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
            E S+        + +TIS G A    H +  + +   ADQALY  K+ GR
Sbjct: 547 AELSEPVHYGAERLRVTISIGAALYPRHAKNFTGLYKAADQALYRVKELGR 597


>gi|154246429|ref|YP_001417387.1| diguanylate cyclase [Xanthobacter autotrophicus Py2]
 gi|154160514|gb|ABS67730.1| diguanylate cyclase [Xanthobacter autotrophicus Py2]
          Length = 429

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 17/193 (8%)

Query: 82  LGYISGSILKELFISYNRISQ-------LSRIDCLSGLLNHSAFISSLGSYNE------- 127
           +GY + S + EL      + +       ++  D L+GL N   F  ++ +          
Sbjct: 234 IGYFTHSDITELKRQQAALERALAELSAIAATDVLTGLANRRGFEKAISAAWHACGVAGT 293

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALG 186
            ++++  D+D+FK IND FGH  GD+ +  ++D +   V        R GGEEFA     
Sbjct: 294 PVAVIIIDLDHFKAINDRFGHAAGDECLRRIADAVRSSVTRADDLAARHGGEEFAILLPN 353

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQAL 244
           ++ +EA  +   +R+ +              +T+S GI       +  I   +  AD+AL
Sbjct: 354 ATAEEALAIGQGIRRSVRVEPWAQVHPDLNRLTVSMGICAVKSACEVDIDLAMRHADEAL 413

Query: 245 YVAKKSGRNRVVC 257
           Y AKK GR+R+  
Sbjct: 414 YRAKKRGRDRIEI 426


>gi|332304462|ref|YP_004432313.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332171791|gb|AEE21045.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 887

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 10/179 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQ 141
           ++E      ++   +  D L+ L N + F + L               ++VF D+D FKQ
Sbjct: 451 IEERKAIQQKLVHDAHHDALTDLPNRTMFNARLSQALANKKRYPQNNFAVVFIDLDRFKQ 510

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH  GD  +  ++ ++         + RLGG+EF          +   + ++   
Sbjct: 511 INDTIGHHAGDSFLIEVASRINHCIRGHDLLARLGGDEFVILLDNFESPDDVEIISNRII 570

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
               +   +  G  I    S GIA      +  S I+  AD A+Y AK  GR + V F 
Sbjct: 571 NSIAAPF-VLDGREIFSGASIGIAYLESGYQTASEIVRDADAAMYQAKSQGRGQYVVFD 628


>gi|254820203|ref|ZP_05225204.1| diguanylate cyclase with PAS/PAC sensor [Mycobacterium
           intracellulare ATCC 13950]
          Length = 597

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 90/178 (50%), Gaps = 10/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
            ++ +   +  ++ +L+R D L+GL+N +  ++ L +   +       + ++F D+D+FK
Sbjct: 421 RVVDDQVEAEQQLERLARFDTLTGLVNRAEALARLDAALRQPRPPETHVGVLFCDVDHFK 480

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
            IND +GH  GD V+A ++ ++         VGR GG+E      G  S  E A +A  +
Sbjct: 481 AINDRWGHGTGDVVLATVAARIRASVRREDTVGRTGGDEMLILLPGVRSADELAQIAEKI 540

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R+ +   +    SG +I  T+S G       E +  +  RAD+A+Y AK   RN VV 
Sbjct: 541 RRRVA--EPIHVSGNTIGATLSIGATLALPAESVDAVTARADEAMYRAKSGDRNAVVA 596


>gi|298529260|ref|ZP_07016663.1| diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510696|gb|EFI34599.1| diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 365

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 70/235 (29%), Positives = 104/235 (44%), Gaps = 18/235 (7%)

Query: 36  SIFIATVIFIANIFLFYIGLTP------FYGLEYILVENLSLVIISITISLLLGYISGSI 89
            I   T++ +A+I +   G+          G   I +  + L +  +             
Sbjct: 134 GIIAGTLVILASISIAATGIAGELQDQEVSGQALIYLARIHLFLGLLLGLAAAATTLRDK 193

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
            ++  I  N + +L+  D L+GL N  A    L         Y  K+S++  D+D FKQ+
Sbjct: 194 YRDALIWNNSLQELASTDMLTGLANRRAAEDFLEKQAYANRRYGRKVSVIMADVDLFKQV 253

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD V+  L   L         V R GGEEF   A     QEA  LA   R  
Sbjct: 254 NDKYGHSRGDMVLVELGRILRNSLRETDLVARWGGEEFLIVAPEIDMQEAKELAERCRCA 313

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I + Q+       I++T+S G+ E   K+ + T++ RAD  LY AK SGRN +V 
Sbjct: 314 IASRQV-----AGINLTMSFGVTELREKDSVDTVLSRADNLLYKAKSSGRNLIVA 363


>gi|225390081|ref|ZP_03759805.1| hypothetical protein CLOSTASPAR_03831 [Clostridium asparagiforme
           DSM 15981]
 gi|225043856|gb|EEG54102.1| hypothetical protein CLOSTASPAR_03831 [Clostridium asparagiforme
           DSM 15981]
          Length = 316

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 10/180 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSA----FISSL---GSYNEKLSIVFF-DIDYFKQI 142
           KEL     +++ ++  D L+GL N        +  +       +  +++   DID FK++
Sbjct: 138 KELRSDMEKLNYMAFRDGLTGLYNRRYVVGDLLEDIRGFQQSEQTCNVMILADIDDFKKV 197

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD+ +  ++  L         V R GGEEF    L  +  EA  ++  +R+ 
Sbjct: 198 NDTYGHEAGDRALVCIAHILEGHCRKH-KVVRWGGEEFLIVLLNVTRNEAFEISEQIRRE 256

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           ++N  I   +G     T++ G+     +E I   I RAD+ALY  K++G+NR V + ++ 
Sbjct: 257 VQNFPIFY-NGIEFRCTLTLGLHAYQDQEGIEESIDRADKALYRGKRNGKNRSVWYENMM 315


>gi|167562036|ref|ZP_02354952.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia oklahomensis EO147]
 gi|167569294|ref|ZP_02362168.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia oklahomensis C6786]
          Length = 786

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 102/208 (49%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVIIS-ITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +Y    N+ L++ S IT+++L  + ++  ++ +L      ++QL+  D L+GL N  A +
Sbjct: 292 DYHHTRNVYLLMTSFITLAMLAFFGVATGLIGKLLGREREMTQLAEFDLLTGLANRYATL 351

Query: 120 SSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            SL       S   +L+I+F D+D FK +ND  GH  GD V+   + +L         + 
Sbjct: 352 RSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVMNEGALA 411

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EF     G   E+ A  LA  + ++    +     G S  +  S GIA      E
Sbjct: 412 RIGGDEFVVVVKGDDVERRAERLAEAIVRMFA--EPFDVRGSSFVLHASIGIALHSVENE 469

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +AD A+Y AK +G+N    ++
Sbjct: 470 SEIDLLKKADLAMYSAKDAGKNCYQFYA 497


>gi|157737788|ref|YP_001490472.1| EAL/GGDEF domain-containing protein [Arcobacter butzleri RM4018]
 gi|157699642|gb|ABV67802.1| EAL/GGDEF domain protein [Arcobacter butzleri RM4018]
          Length = 851

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 74/164 (45%), Gaps = 8/164 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
             +   +  D L+ L N   F       I     +N   +++  D D FK INDNFGH  
Sbjct: 427 QDLEYYAARDPLTDLFNQRVFNDMMRYEIKRAQRHNYSFALMVIDCDNFKPINDNFGHSF 486

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD ++  ++  L         V R GG+EF       +E+EA I+AN + K +   +I  
Sbjct: 487 GDTLLQTVATTLKKEKRDEDIVARYGGDEFTIILPECTEKEAMIVANRISKKMATEKIVA 546

Query: 211 SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
             G +I ITIS GI     H      +   AD  +Y AK+ G+N
Sbjct: 547 PDGSNIGITISIGICVYPTHTTSQKDMFIIADSMMYQAKEEGKN 590


>gi|114565155|ref|YP_752669.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
 gi|114336448|gb|ABI73830.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
          Length = 696

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 24/199 (12%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            +     S   I+  +  D L+ L N   F       I+S   ++ KL+++F D+D+FK+
Sbjct: 249 DISSRKKSEQEIAYYAFYDTLTDLPNRRKFLLQLDSAIASAKRHSTKLALLFIDLDHFKR 308

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPM-------------FVGRLGGEEFAAAALGSS 188
           IND  GH  GD+++   + ++                      + RLGG+EF        
Sbjct: 309 INDTLGHKAGDELLCETATRIKSSVRISDELSVGSRVDYENEHLARLGGDEFTLLLCELE 368

Query: 189 E-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYV 246
                AI+A  +   +  S+  +  G    I+ S GI+      E    ++  AD A+Y 
Sbjct: 369 AFDNVAIIAQRVLDAL--SKPFVIQGQQTFISASIGISFYPDDGESGDILLQHADTAMYE 426

Query: 247 AKKSGRNRVVCFSDIENNT 265
            K +G+N    FS   + +
Sbjct: 427 VKHNGKNGYQLFSHEMHKS 445


>gi|325982459|ref|YP_004294861.1| periplasmic/7TM domain sensor diguanylate cyclase [Nitrosomonas sp.
           AL212]
 gi|325531978|gb|ADZ26699.1| periplasmic/7TM domain sensor diguanylate cyclase [Nitrosomonas sp.
           AL212]
          Length = 568

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 75/234 (32%), Positives = 108/234 (46%), Gaps = 16/234 (6%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
           YF +     I   I  AN      G  PF  L Y   E + +V  +I ++L L       
Sbjct: 337 YFLLASIFTICGGIITANTV---WGFIPFNWLTYRATE-IGMVADAILLALALAERFNIN 392

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
             E   +  R    + ID L+ L N  AF   +              S++  DID FK +
Sbjct: 393 QSEKLAAEKR----ADIDLLTNLNNRRAFYKFVQPMWAISLRSKSSTSVIILDIDDFKLL 448

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           NDN+GHPVGD V+  L++ +     +   + R GGEEF      +   +A  +A+ +RK 
Sbjct: 449 NDNYGHPVGDLVLVRLAETIQKEARSGDILARWGGEEFLIFLPETQLADAITIADRMRKR 508

Query: 203 IENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
           I   QI+I +G  I  T S G+A        ++ +I +AD+ LY AKK GRNRV
Sbjct: 509 ITTIQISIDNGEKISFTASFGVATTQDINVSLNELIAQADRQLYHAKKKGRNRV 562


>gi|254459220|ref|ZP_05072642.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207084113|gb|EDZ61403.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 650

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 87/187 (46%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
           +  EL    + +   +  D L+GL N   F   L    +K       +++ F D+D+FK+
Sbjct: 208 MQNELLEQKDILEHQATHDALTGLPNRILFNDRLEQSIQKAKRNDTQIALFFIDLDHFKE 267

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           IND+ GH +GD+V+  ++ +L +V      + RLGG+EF        + Q     +  + 
Sbjct: 268 INDSLGHHIGDEVLKVVATRLNLVIRLEDTLARLGGDEFTIIMEDIKNIQYVIFFSQKIL 327

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           K++   +    +  +++++ S GI+        ++ ++  AD A+Y AK  GRN    +S
Sbjct: 328 KVL--LEPISVNNQNLYLSSSIGISLFPQDSTDLNNLLKYADTAMYKAKSEGRNNFQFYS 385

Query: 260 DIENNTC 266
                  
Sbjct: 386 KEMTELA 392


>gi|218898609|ref|YP_002447020.1| sensory box/GGDEF family protein [Bacillus cereus G9842]
 gi|218540972|gb|ACK93366.1| sensory box/GGDEF family protein [Bacillus cereus G9842]
          Length = 838

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 10/205 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           +L   +++V I I       Y+    +  +    + I+ L+  D ++ + N   F   L 
Sbjct: 371 MLFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELD 430

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     +K  +++ D++ FK IND  GH +GD+V+  ++ +        + + R+G
Sbjct: 431 RSIKRVQKTQDKFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPTIPLARIG 490

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           G+EFA      +EQ+   L   L  I E  +  + +  S ++++S GIA         +T
Sbjct: 491 GDEFAIIVHNQTEQQLLNLCKTLFLITE--EPFVVNQHSFYLSLSIGIAVYPFGGINTTT 548

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++  AD A+Y AK+ G N V  + +
Sbjct: 549 LLQHADIAMYSAKEKGNNAVCMYDE 573


>gi|153831648|ref|ZP_01984315.1| ScrC [Vibrio harveyi HY01]
 gi|148872158|gb|EDL70975.1| ScrC [Vibrio harveyi HY01]
          Length = 775

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 78/186 (41%), Gaps = 11/186 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S ++    S   ++  ++ D L+GL N       L             + ++F D+D+FK
Sbjct: 332 SEIERRKSSEMELAYQAKHDALTGLPNRVYGSERLDLELSRAERMKSNVLVMFIDLDHFK 391

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           QIND+ GH VGD+V+   +++L         + R+GG+EF            A   A  +
Sbjct: 392 QINDSMGHFVGDEVLKLAAERLHNAVRKTDLLARIGGDEFLLVIPDLQDADSAKRFAATV 451

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++  +       ++ S G++      +    ++  AD A+Y  K+ GRN    +
Sbjct: 452 LSVF--NEPFVWQNHEFFLSASVGMSVFPEDGDNAEQLLACADMAMYRVKQDGRNAFCFY 509

Query: 259 SDIENN 264
               N 
Sbjct: 510 DHNMNQ 515


>gi|134099798|ref|YP_001105459.1| diguanylate cyclase/phosphodiesterase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291005611|ref|ZP_06563584.1| diguanylate cyclase/phosphodiesterase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133912421|emb|CAM02534.1| diguanylate cyclase/phosphodiesterase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 516

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 105/233 (45%), Gaps = 22/233 (9%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           ++  ++ +   IAT +FIA   L  + LT F   E + V  + LVI     +LL      
Sbjct: 285 VVQLAVPYLPLIATALFIAAGLLAGLTLTRFQ--ECVFVALMGLVISRQLATLL------ 336

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQIN 143
               E      R    +  D L+G+ N + F+  L          + + F D+D FK++N
Sbjct: 337 ----ENNRLLRRAEYEALHDPLTGVANRTLFLHWLERSLADCRRPIVLAFCDLDDFKEVN 392

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           DNFGH  GD V+   + +L    G    V RLGG+EFA       E         LR + 
Sbjct: 393 DNFGHAAGDLVLTSAARRLTRCAGADDLVARLGGDEFAVVLHNVHEPLEEAGQRLLRALQ 452

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRN 253
           E   +N   G  + ++ S G+      +P+    T++  AD A+YVAK+ G+N
Sbjct: 453 EPHDLN---GRPLVVSASVGMTYLSPDQPVAGTDTLMRWADSAMYVAKRRGKN 502


>gi|310659369|ref|YP_003937090.1| diguanylate cyclase/phosphodiesterase [Clostridium sticklandii DSM
           519]
 gi|308826147|emb|CBH22185.1| putative Diguanylate cyclase/phosphodiesterase precursor
           [Clostridium sticklandii]
          Length = 844

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 9/181 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQIN 143
           + ++++ S   + +L   D L+ L N  A  + +  + ++      +++  DID FK IN
Sbjct: 397 LYEQIYNSEEELKKLVYFDSLTKLPNRIALTNDIQEHVKQQEAITAALMIIDIDNFKYIN 456

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+ +  ++   + +    + V R+GG+EFA     S+ Q+  I A ++   +
Sbjct: 457 DTLGHHFGDEFLIEIAKIFLNLSSQAIRVYRIGGDEFAFLVTAST-QQIEIAAQEIMNCV 515

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
                       IH T+S GIA      + +  ++  AD A+Y AK+ G+ R V F D+ 
Sbjct: 516 HKPIFM--DKIKIHTTLSMGIAVYPFAGKTVQQLLKNADIAMYEAKQRGKERYVFFDDVM 573

Query: 263 N 263
           N
Sbjct: 574 N 574


>gi|296506560|ref|YP_003667794.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
 gi|296327147|gb|ADH10074.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
          Length = 785

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 94/205 (45%), Gaps = 10/205 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           IL   +++V I I       Y+    +  +      I+ L+  D ++ + N   F   L 
Sbjct: 318 ILFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELD 377

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     +K  +++ D++ FK IND  GH +GDKV+  ++ +        + + R+ 
Sbjct: 378 RSIKRAQKTQDKFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIV 437

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           G+EFA      +EQ+   L   L +I E  +  + +  S ++++S GIA         +T
Sbjct: 438 GDEFAIIVHNQTEQQLLDLCKTLFRITE--EPFVVNQHSFYLSLSIGIAVYPFGGINTTT 495

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++  AD A+Y AK+ G N V  + +
Sbjct: 496 LLQHADIAMYSAKEKGNNAVCMYDE 520


>gi|191165101|ref|ZP_03026945.1| diguanylate cyclase [Escherichia coli B7A]
 gi|190904873|gb|EDV64578.1| diguanylate cyclase [Escherichia coli B7A]
          Length = 460

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 281 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 339 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 399 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 456


>gi|241204854|ref|YP_002975950.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858744|gb|ACS56411.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 763

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 11/184 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           ++ +  +EL  +   I  L+  D L+GL N       L             ++I+  D+D
Sbjct: 296 LAEARNRELEAAKESIEHLALHDYLTGLPNRRYLDKMLDERAAECRAKGMAMAILHIDLD 355

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILA 196
            FKQIND  GH  GD ++   +  L        FV R+GG+EF    +   + ++ A LA
Sbjct: 356 RFKQINDTLGHRAGDAMLQHAASVLRTSVRAVDFVARIGGDEFVILCIVDPASKKIASLA 415

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             + +  E  +     G       S GIA           ++  AD ALY AK  GRNR 
Sbjct: 416 ERVIR--ELRKPVRYEGHDCRFGASIGIAIDSGPTLDAKQMLLDADIALYRAKGLGRNRF 473

Query: 256 VCFS 259
             FS
Sbjct: 474 EFFS 477


>gi|121591683|ref|ZP_01678916.1| ggdef family protein [Vibrio cholerae 2740-80]
 gi|121546458|gb|EAX56684.1| ggdef family protein [Vibrio cholerae 2740-80]
          Length = 326

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 69/261 (26%), Positives = 113/261 (43%), Gaps = 30/261 (11%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           IW C       F P  F I+ S  F+   + +  I    + Y          + L +  +
Sbjct: 68  IWSC-------FVPILFYIFTSARFAFVTSCLFLIIQSNIIY----------WQLQQTGA 110

Query: 71  LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSY 125
            +  S+ + L   YI   ++  ++    R     +  L+  D L+G  N  +  +S   +
Sbjct: 111 ALSWSVLLHLCFAYIGIWVVAHVYEDNRRKIENSLLYLASRDPLTGAHNRLSLTTSFQHF 170

Query: 126 NE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   L ++  D+D+FK IND FGH  GDKV+   +     V G    + R+GGEEF
Sbjct: 171 ERFSDQTSLCLLVIDLDFFKSINDQFGHDTGDKVLIETTRLFTQVVGDNN-LYRIGGEEF 229

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                  S ++A  +   LR I+            + +TIS G+ E    + ++ ++  A
Sbjct: 230 CVTLFDQSLEQAGRVCEHLRAIVSQHLFAFRE-KRVQVTISIGVCEYQAGDQLNDLLKFA 288

Query: 241 DQALYVAKKSGRNRVVCFSDI 261
           D  LY AKK+GRN+V   SD+
Sbjct: 289 DMELYRAKKAGRNQVRL-SDM 308


>gi|83311070|ref|YP_421334.1| signal transduction protein [Magnetospirillum magneticum AMB-1]
 gi|82945911|dbj|BAE50775.1| Predicted signal transduction protein containing a membrane domain
           [Magnetospirillum magneticum AMB-1]
          Length = 820

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 77/183 (42%), Gaps = 11/183 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDN 145
                 R+   +  D L+ L N    +  L         +  K+ ++F D+D FK IND+
Sbjct: 382 RKDQERRLQHQALFDGLTDLPNRVHALDRLAREIDMARDHGRKVGLLFVDLDGFKAINDS 441

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD+++   +++L    G    V R GG+EF         ++ A        I++ 
Sbjct: 442 LGHEYGDELLVLAAERLRQAAGDGGVVARFGGDEFLVIM--GDMEDGAAAGEVAAAIVDR 499

Query: 206 -SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            SQ    S   +  T S G+A          T++  AD A+Y AK +GRNR   F+   N
Sbjct: 500 FSQPFTISRRDLISTASIGLALYPEDGRTQQTLLRNADIAMYQAKLAGRNRFCFFTSRMN 559

Query: 264 NTC 266
              
Sbjct: 560 EEA 562


>gi|313497744|gb|ADR59110.1| Diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida BIRD-1]
          Length = 332

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 85/182 (46%), Gaps = 15/182 (8%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFF 134
           L +++  + ++L    +   +L+  D L+ + N                 + + LS++  
Sbjct: 158 LSWVNQQLQRQL----DENRELAERDALTRVANRYRLESALQLECQRAQRFRQPLSLIAM 213

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND +GH  GD  +  +++ L         + R GG+EF      ++  EA  
Sbjct: 214 DMDDFKPINDRYGHARGDAALVRVAESLRTCLRELDLLARWGGDEFVIVLPQTALGEALD 273

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +A  LR+++E  +          +T+S G+ +    E    ++ RAD+ALY AK +G+N 
Sbjct: 274 VAARLRQVLERVEPV----GDCRLTMSYGVVQWREGEDQHALLARADKALYRAKGTGKNA 329

Query: 255 VV 256
           + 
Sbjct: 330 IA 331


>gi|227325974|ref|ZP_03829998.1| hypothetical protein PcarcW_01091 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 610

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 93/206 (45%), Gaps = 15/206 (7%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G +  ++E L+ ++ ++ I +     + S+  E       +   +  D L+GL N S+F 
Sbjct: 409 GYDQTMIELLAPLVKTLGIIIH----ARSLEDERTQIEASLRFNAGHDFLTGLPNRSSFF 464

Query: 120 SSL---------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
                         + +K  +   DID FK IND +GH  GD V+  L+  + +      
Sbjct: 465 EQASAFFLLKQQSQHTDKGCLAIIDIDLFKNINDQYGHLAGDAVLKELAMLMRMSLRQED 524

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            V RLGGEEF       S Q A +    +R+ IE   +      ++H TISAGIA     
Sbjct: 525 LVARLGGEEFIILLKEVSYQTAVVTIERIRQAIEQHTLEY-DRQNLHFTISAGIAAYRSD 583

Query: 231 -EPISTIIYRADQALYVAKKSGRNRV 255
              +   I  AD+ LY AK+ GRN V
Sbjct: 584 LASVEEWIQLADENLYAAKRQGRNCV 609


>gi|119492593|ref|ZP_01623811.1| regulatory component of sensory transduction system [Lyngbya sp.
           PCC 8106]
 gi|119453062|gb|EAW34232.1| regulatory component of sensory transduction system [Lyngbya sp.
           PCC 8106]
          Length = 455

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 11/175 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDN 145
           L  +   I Q +  D L+ + N  AF   L     +       LS++  DIDYFK  ND+
Sbjct: 279 LNETSQNIYQQAISDSLTQIGNRRAFDHYLQQEWHRAKREQLVLSLILADIDYFKSYNDH 338

Query: 146 FGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD+ +  ++  +   V     FV R GGEEFA     +  + A ++A  +   I 
Sbjct: 339 YGHQAGDECLRQIAQAIHDAVKRPADFVARYGGEEFAVILPNTDIEGAKLVAELIHSQIH 398

Query: 205 NSQINISSGPSI-HITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             Q+          IT+S G++      ++ +  +I R D ALY AK+ GR+R+V
Sbjct: 399 QLQLPHPQSTVCPFITLSQGVSACVPQPEDSLKMLIARTDGALYQAKEQGRDRIV 453


>gi|160875961|ref|YP_001555277.1| PAS/PAC and GAF sensor(s)-containing diguanylate
            cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|160861483|gb|ABX50017.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS195]
 gi|315268156|gb|ADT95009.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS678]
          Length = 1419

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 9/185 (4%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQIND 144
            S +         + +L+  D L+GL N S    +L +   +    +++  D+D FK+IND
Sbjct: 971  SDISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLSNLVNREIAHALMVLDLDNFKRIND 1030

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKII 203
            + GH +GD ++  ++ ++  +      + RLGG+EFA      S    +A +AN +   I
Sbjct: 1031 SLGHQIGDTLLKLVAARIKSLLPKNTSIYRLGGDEFAIVLDKNSDISASAAIANRI---I 1087

Query: 204  ENSQINIS-SGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDI 261
            E  +     S   + + +S GI      E     ++ +AD A+Y AK +G N    +S+ 
Sbjct: 1088 EGLKPAFEVSNEQLVLGLSIGIVLFPEDEQSEQALLRKADIAMYHAKSAGGNCYQFYSES 1147

Query: 262  ENNTC 266
             N   
Sbjct: 1148 LNQHA 1152


>gi|26991094|ref|NP_746519.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida KT2440]
 gi|24986130|gb|AAN69983.1|AE016636_6 sensory box protein [Pseudomonas putida KT2440]
          Length = 332

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 85/182 (46%), Gaps = 15/182 (8%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFF 134
           L +++  + ++L    +   +L+  D L+ + N                 + + LS++  
Sbjct: 158 LSWVNQQLQRQL----DENRELAERDALTRVANRYRLESALQLECQRAQRFRQPLSLIAM 213

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND +GH  GD  +  +++ L         + R GG+EF      ++  EA  
Sbjct: 214 DMDDFKPINDRYGHARGDAALVRVAESLRTCLRELDLLARWGGDEFVIVLPQTALGEALD 273

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +A  LR+++E  +          +T+S G+ +    E    ++ RAD+ALY AK +G+N 
Sbjct: 274 VAARLRQVLEQVEPV----GDCRLTMSYGVVQWREGEDQHALLARADKALYRAKGTGKNA 329

Query: 255 VV 256
           + 
Sbjct: 330 IA 331


>gi|145223470|ref|YP_001134148.1| diguanylate cyclase with PAS/PAC sensor [Mycobacterium gilvum
           PYR-GCK]
 gi|145215956|gb|ABP45360.1| diguanylate cyclase with PAS/PAC sensor [Mycobacterium gilvum
           PYR-GCK]
          Length = 849

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 81/178 (45%), Gaps = 11/178 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFK 140
            +     +   +  L+  D L+GL N +  +  +              + +++ D+D FK
Sbjct: 665 DITSRKRAEAELQHLALHDPLTGLANRALLVDRVEQAIADIGRHAPACVGLLYLDLDGFK 724

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDL 199
            +ND +GH  GD+V+  ++ ++           RLGG+EFA       + EA   +A  +
Sbjct: 725 PVNDTWGHAAGDEVLNAVARRIENSIRPGDTAARLGGDEFAVLCPVIKDSEALHGIAERI 784

Query: 200 RKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R+ +    + + +G +   ++ S G A         ++I   D+ +Y AK++G++RV 
Sbjct: 785 RREVRR-PLRLRAGRTYDRLSASTGAATSGGNSNAESLIAHTDRLMYRAKRNGKDRVA 841


>gi|313682618|ref|YP_004060356.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
 gi|313155478|gb|ADR34156.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
          Length = 778

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 5/168 (2%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
             +R   ++  D L+GL N  + +  L    S N   + +F D+D FK++ND++GH  GD
Sbjct: 345 EKDRFDFMAHHDSLTGLPNRLSLMEYLKIKCSQNSPFAFLFLDLDGFKEVNDSYGHRFGD 404

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           K++  +++ L  +  +   + R GG+EF      + E+    L      +      NI  
Sbjct: 405 KLLIRIAEVLETITPSNSKIIRTGGDEFVVILECNEEENRIDLMMQNLVLALRHPFNI-D 463

Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
              ++IT S GIA      +    +  +AD A+Y AKKSGRN    + 
Sbjct: 464 NVDVYITASVGIAMYPSDADNSEDLFQKADAAMYNAKKSGRNTYSFYE 511


>gi|300819785|ref|ZP_07099973.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
 gi|300527666|gb|EFK48728.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
          Length = 460

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 281 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 339 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 399 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 456


>gi|197117590|ref|YP_002138017.1| GAF domain-containing sensor diguanylate cyclase [Geobacter
           bemidjiensis Bem]
 gi|197086950|gb|ACH38221.1| sensor diguanylate cyclase, GAF domain-containing protein
           [Geobacter bemidjiensis Bem]
          Length = 356

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 61/264 (23%), Positives = 111/264 (42%), Gaps = 20/264 (7%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60
           +T  +     I+L  +     F  +   +   I  S+    +IF + I    +G+     
Sbjct: 93  LTEQVLSAGEIFLIEDTEKTPFFKNPIALNEGI-RSLVCVPLIFQSRI----VGILYLDD 147

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
            +    +   + ++SI  S     I  + L      + R   L+  D L+GL NH  F  
Sbjct: 148 FKPREFDREKMNMLSILASFAAMAIHNATL------HKRTKLLAITDSLTGLHNHRYFKQ 201

Query: 121 -------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                      Y++  SI+  D+D FK  ND++GH  GD+++A + + ++          
Sbjct: 202 YFRQEMGRAKRYHKPFSIIMMDVDDFKSYNDSYGHATGDRLLALMGEIILETIRGVDVAF 261

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEP 232
           R GGEEF      ++  +A + A  LR+ ++    +    G    +T+S G+A       
Sbjct: 262 RYGGEEFIVLLPETTLDKAILAAERLRESVQAGTASRPVDGSGRGVTVSIGVASYPDNAD 321

Query: 233 -ISTIIYRADQALYVAKKSGRNRV 255
            +  +    D  LY+AK+ G+N+V
Sbjct: 322 KMDELFNIVDSLLYLAKRCGKNKV 345


>gi|70728783|ref|YP_258532.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens
           Pf-5]
 gi|68343082|gb|AAY90688.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           fluorescens Pf-5]
          Length = 449

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 86/185 (46%), Gaps = 13/185 (7%)

Query: 81  LLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           LL Y+S  +    E    + R+  ++  D L+ L N       L          + ++++
Sbjct: 264 LLQYVSAQLAAAIERKQLHARLHYMAEYDQLTHLPNRELLRERLRSALARARRESGRMAL 323

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQ 190
           ++ D+D FK++ND  GH VGD ++  ++++L         V R+GG+EF          +
Sbjct: 324 LYVDLDKFKEVNDTCGHAVGDMLLQAVANRLKGCVRETDTVARIGGDEFVILLESVQHSE 383

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
           +A  +A  +R+ +   +     G S++I  S GI     H      +   AD+A+Y  K+
Sbjct: 384 DAQRVAEKIRRTL--GEPLRLDGHSLNILPSIGIGLYPEHGLEEKQLFKHADEAMYAVKR 441

Query: 250 SGRNR 254
           + ++R
Sbjct: 442 AQKSR 446


>gi|89095154|ref|ZP_01168079.1| sensor histidine kinase [Oceanospirillum sp. MED92]
 gi|89080585|gb|EAR59832.1| sensor histidine kinase [Oceanospirillum sp. MED92]
          Length = 376

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 17/187 (9%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFG 147
           I+   + +LS ID L+ + N  +F                 L+ +F D+D+FK +NDNFG
Sbjct: 185 INQENLHRLSSIDMLTKVHNRRSFEQEIVRELSRASRGGYHLACLFLDLDHFKMVNDNFG 244

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+V+  +   L         V R GGEEFA       +  A  +A  LR+ +    
Sbjct: 245 HQTGDRVLRTVGLFLNKQLRKTDIVARYGGEEFAVLLPNCDKAGALEIAEGLRQKLSKLI 304

Query: 208 INISSGPSIHITISAGIA-------ERCHKEPIS-TIIYRADQALYVAKKSGRNRVVC-- 257
               +     +T S G++        + H + +S  +I  AD+A+Y +K +GR+RV    
Sbjct: 305 FRDEASKPFRMTTSVGVSLCKPDEYPKAHLDDVSYQLIQSADKAVYHSKHNGRDRVSFNE 364

Query: 258 FSDIENN 264
           FS  +N 
Sbjct: 365 FSGPDNR 371


>gi|117924947|ref|YP_865564.1| diguanylate cyclase [Magnetococcus sp. MC-1]
 gi|117608703|gb|ABK44158.1| diguanylate cyclase [Magnetococcus sp. MC-1]
          Length = 453

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 75/165 (45%), Gaps = 7/165 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGD 152
           ++Q S  D L+ + N     S +    E       +   +  DID+FK IND +GH  GD
Sbjct: 287 LAQESGRDPLTKVYNRRFLDSVVKHEMEVSMRHEIRFGFLLCDIDHFKTINDTYGHDAGD 346

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+   +++L        +V R GGEEF       S Q    LA  +R  IE    ++ S
Sbjct: 347 AVLQQFAERLSSAARVNDYVFRFGGEEFLFVYGDMSPQRLEHLAEKVRHCIEQELFDLPS 406

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           G  IHIT S G A           +   D+ALY AK SGRNR + 
Sbjct: 407 GEKIHITASFGGAVHDGNPNFHKTLKLTDEALYEAKHSGRNRCII 451


>gi|288941699|ref|YP_003443939.1| response regulator receiver modulated diguanylate cyclase
           [Allochromatium vinosum DSM 180]
 gi|288897071|gb|ADC62907.1| response regulator receiver modulated diguanylate cyclase
           [Allochromatium vinosum DSM 180]
          Length = 428

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 80/178 (44%), Gaps = 9/178 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQIND 144
           E       I   +  D L+GL N   F  +              L+ V  DID+FK++ND
Sbjct: 253 EQIELVRTIRDSAVRDYLTGLYNRRHFFETGETLYAGAKRRQITLAAVMLDIDHFKRVND 312

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+VI  ++  L         +GR GGEEF     G  +   A+    LR  + 
Sbjct: 313 TYGHLAGDRVIKQVASLLACGVRQADLLGRYGGEEFCILLTGIDQSSLAMTLERLRSTVA 372

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           ++ I      S+ +TIS G A     + +  +I RAD  LY AK+ GRNR V    +E
Sbjct: 373 STPIEHED-QSLSVTISLG-ATLALGDSLQAMINRADACLYHAKQGGRNRFVIDDSVE 428


>gi|288871273|ref|ZP_06117056.2| sensory box/response regulator [Clostridium hathewayi DSM 13479]
 gi|288864046|gb|EFC96344.1| sensory box/response regulator [Clostridium hathewayi DSM 13479]
          Length = 363

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 16/179 (8%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQIND 144
            + +      ++   S  D L+G+ N +AF      +L     + S+   DID FK +ND
Sbjct: 194 DISKQKEREEQLLFQSTRDGLTGIYNKTAFEYMMEETLKR-GSRGSLYMIDIDNFKDVND 252

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILANDLRKII 203
            +GHP GD+++    + L  +F     +GR+GG+EF   +  G ++ +A  L        
Sbjct: 253 QYGHPAGDRILVKTGELLREIFRDSDLIGRVGGDEFVVYSESGDTKMKALRLL------- 305

Query: 204 ENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            N   + S    + I++S GIA       E    +  RADQA+Y AK+ G+NR+  + +
Sbjct: 306 -NGTADFSKEGELRISVSIGIASSTGNPDEEYQELFSRADQAMYRAKQEGKNRIAWYEE 363


>gi|254523051|ref|ZP_05135106.1| gaf domain/ggdef domain/eal domain protein [Stenotrophomonas sp.
           SKA14]
 gi|219720642|gb|EED39167.1| gaf domain/ggdef domain/eal domain protein [Stenotrophomonas sp.
           SKA14]
          Length = 932

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 12/185 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK-LSIVFFDIDYFKQIN 143
           E   +  R++  +  D L+GL N    +  L               +++F D+D FK +N
Sbjct: 502 ERLRAEQRLTHQAMHDALTGLPNRLHLLDRLQDALALARREGGPVFAVLFLDLDRFKLVN 561

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKI 202
           D+ GH  GD+++  ++ ++V + G    V RLGG+EFA          +A      L   
Sbjct: 562 DSIGHAAGDRMLVEVAKRIVSMAGPEDVVARLGGDEFAVLLQCPQGLAQALDFGQRLLLA 621

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           ++ S     +G  +  + S GIA    +      ++  AD A+Y AK  G +R   F + 
Sbjct: 622 LQESM--WIAGRELFPSGSLGIALWNPRYRTGEELLRDADAAMYRAKAQGHDRCSIFDED 679

Query: 262 ENNTC 266
                
Sbjct: 680 MREQA 684


>gi|146281321|ref|YP_001171474.1| hypothetical protein PST_0935 [Pseudomonas stutzeri A1501]
 gi|145569526|gb|ABP78632.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 261

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 81/185 (43%), Gaps = 8/185 (4%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           +  IS      +      + + S +D L+G+ N       L         Y   L++V  
Sbjct: 78  VARISDRYQAMMQDLNASLREASMLDSLTGIANRRLLTERLREESERAKRYGRPLALVML 137

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID FK IND++GH VGD+V+  +   +          GR GGEEF       + Q A  
Sbjct: 138 DIDRFKIINDDYGHDVGDRVLIEVVRVMESEIREHDLCGRWGGEEFLILMPECTAQMAQT 197

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +   L   I    + ++    + +T S GIAE   +E  S  I RAD AL  AK+SGRNR
Sbjct: 198 VLGRLGASIAALGVRVNEDL-LGVTASMGIAELRPEETYSNTINRADLALLRAKRSGRNR 256

Query: 255 VVCFS 259
                
Sbjct: 257 CELAD 261


>gi|145300867|ref|YP_001143708.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853639|gb|ABO91960.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 333

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 11/171 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDN 145
           L        QL+  D L+G  +                 +++ LS++  D+D FKQIND+
Sbjct: 166 LQQKAEENRQLAETDALTGAASRYRLERDIQMECERAKRFHQPLSVIAMDVDDFKQINDS 225

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD+ +  +  ++         + R GG+EF      ++  +A  +A+ LR++I  
Sbjct: 226 HGHAAGDQTLINIVARVQSHIREIDLLARWGGDEFMVVLPNTALADAWRVADKLRELIAQ 285

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           S++       + IT+S G+AE    EP+S ++ R D+ALY AK +G+N++ 
Sbjct: 286 SRVC----EQLDITLSFGLAEYRLNEPLSQLMVRVDRALYQAKLAGKNQIC 332


>gi|119470514|ref|ZP_01613217.1| response regulator/GGDEF domain protein [Alteromonadales bacterium
           TW-7]
 gi|119446215|gb|EAW27492.1| response regulator/GGDEF domain protein [Alteromonadales bacterium
           TW-7]
          Length = 411

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 81/164 (49%), Gaps = 10/164 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGD 152
           I   +  D L+ L N   F     +  ++L       ++   DID+FK IND +GH  GD
Sbjct: 250 IKHQANTDYLTDLPNRRYFFEQANNSLKELSLKKVNGALAMIDIDHFKSINDTYGHDAGD 309

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  L+  L   +     V RLGGEEFA      +  EA       R  +EN+    S 
Sbjct: 310 QVLKGLAICLKK-YFEKYLVARLGGEEFAVYFADENTPEALKRLEGFRYFVENNSQEFSK 368

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              I +TIS G +     + + T++ +ADQ LY AK+SGRN+VV
Sbjct: 369 -EKIKLTISIGFSTGPVYQ-MDTLLKQADQKLYEAKESGRNKVV 410


>gi|152994923|ref|YP_001339758.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150835847|gb|ABR69823.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 332

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 109/224 (48%), Gaps = 12/224 (5%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96
           IF A ++  A + +F+   T  + + Y  + N +LV  SI +   +  +      +   +
Sbjct: 118 IFSAIIVLSAAMVIFFRTDTQVF-MPYRTIFNFTLVYCSIWLVCHIYEV------QRQKT 170

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
              +  L+  D L+ L N  A  +       + + + ++  DID+FK IND +GH +GD 
Sbjct: 171 SAALHSLALQDDLTNLKNRHALKADFSVIYKHFQSIHMLMIDIDHFKSINDKYGHDIGDS 230

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  ++D L           RLGGEEF       S++ A  +A  +R+ IE  +I +S  
Sbjct: 231 VLTEVADLLTQSIQVKEIY-RLGGEEFVCLLKDISDENAYKIAEKVRQSIEQ-KIFLSHN 288

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             I +T+S GI+    +   +  +  ADQ LY AK+ GRN++ C
Sbjct: 289 TPIQVTVSIGISSLQKEHEFTDFLRSADQKLYQAKREGRNQICC 332


>gi|86605201|ref|YP_473964.1| GGDEF/FHA domain-containing protein [Synechococcus sp. JA-3-3Ab]
 gi|86553743|gb|ABC98701.1| GGDEF/FHA domain protein [Synechococcus sp. JA-3-3Ab]
          Length = 261

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 19/179 (10%)

Query: 94  FISYNRISQLSR--------IDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDY 138
           F  Y+R+ +            D L+GL N   F+  L             L +++ D+D 
Sbjct: 80  FAYYDRLEEAFFFQVAAAALYDPLTGLHNRRFFLEHLQREMAFARRHSFPLHLLYLDLDN 139

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND +GH  GD+ +  ++ QL         + R+GG+EF     G  E +   LA  
Sbjct: 140 FKLINDRWGHLAGDQALIQVARQLQDQVRQEDLLARMGGDEFVLMVRGVPEAQILQLAKR 199

Query: 199 LRKIIENSQINISSGPSIHITISAGIAER---CHKEPISTIIYRADQALYVAKKSGRNR 254
           LR+ +++  + + +   IH+T S G+A       +  + + +  ADQALY AK+ G NR
Sbjct: 200 LRQAVQSLPLQVGA-EVIHLTCSIGVASWLSLSAETSVQSFLEAADQALYQAKRQGGNR 257


>gi|83647143|ref|YP_435578.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83635186|gb|ABC31153.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 806

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 11/190 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
            I G  +        ++ + +  D L+GL N    +  L            ++ ++F D+
Sbjct: 355 LILGEDISVRKRYEQQLLRQANYDLLTGLPNRMLALDRLKLALAQSRRDKSQVGLMFLDL 414

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FK IND  GH  GD ++   S ++         V RLGG+EF        S +++ ++
Sbjct: 415 DNFKHINDTLGHDNGDTLLIEASRRIASSLRGNSTVARLGGDEFLIILPSLESPEDSELV 474

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A  + +    S   + +   I ++ S GIA      E  ST++ +AD A+Y AK  G++ 
Sbjct: 475 AARILQAF--SSPFLLNNQEIFVSTSIGIAIYPTDSENSSTLLQQADAAMYQAKHKGKSA 532

Query: 255 VVCFSDIENN 264
              F+   N 
Sbjct: 533 YHRFTPDLNQ 542


>gi|15801891|ref|NP_287911.1| RNase II stability modulator [Escherichia coli O157:H7 EDL933]
 gi|15831112|ref|NP_309885.1| RNase II stability modulator [Escherichia coli O157:H7 str. Sakai]
 gi|168762710|ref|ZP_02787717.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O157:H7 str. EC4501]
 gi|168799587|ref|ZP_02824594.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O157:H7 str. EC508]
 gi|217329471|ref|ZP_03445551.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O157:H7 str.
           TW14588]
 gi|291282375|ref|YP_003499193.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O55:H7 str. CB9615]
 gi|12515503|gb|AAG56527.1|AE005378_6 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13361323|dbj|BAB35281.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|189367010|gb|EDU85426.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O157:H7 str. EC4501]
 gi|189377978|gb|EDU96394.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O157:H7 str. EC508]
 gi|217317910|gb|EEC26338.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O157:H7 str.
           TW14588]
 gi|290762248|gb|ADD56209.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O55:H7 str. CB9615]
 gi|320189960|gb|EFW64612.1| hypothetical protein ECoD_03443 [Escherichia coli O157:H7 str.
           EC1212]
 gi|320637183|gb|EFX07009.1| RNase II stability modulator [Escherichia coli O157:H7 str. G5101]
 gi|320653504|gb|EFX21609.1| RNase II stability modulator [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320659204|gb|EFX26793.1| RNase II stability modulator [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320663997|gb|EFX31184.1| RNase II stability modulator [Escherichia coli O157:H7 str. LSU-61]
 gi|326341051|gb|EGD64844.1| hypothetical protein ECF_03601 [Escherichia coli O157:H7 str. 1125]
          Length = 661

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|323500023|ref|ZP_08104977.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
 gi|323314879|gb|EGA67936.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
          Length = 452

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 11/184 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           +EL      +  LS  D L+ LLN  +  SSL             ++++F D+D FK IN
Sbjct: 259 QELEKQKKTLEYLSERDPLTSLLNRRSLESSLKTAVGKAQRSGLSVAVLFIDLDKFKIIN 318

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKI 202
           D  GH VGD+V+  ++ +L         VGR GG+EF     L       +  A  + + 
Sbjct: 319 DTHGHEVGDEVLHTVASRLSRCTRKTDIVGRYGGDEFVVCLDLLIDSGSVSKKAEQMIRE 378

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +E  +  + +  +  + +S GIA           ++  ADQA+Y AK  G    V  ++ 
Sbjct: 379 VE--RPIVVNQSAYQVGVSIGIATFPLSGTSHEELLICADQAMYKAKSKGGGTFVFANEQ 436

Query: 262 ENNT 265
           +   
Sbjct: 437 DKEA 440


>gi|220935751|ref|YP_002514650.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997061|gb|ACL73663.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 568

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L     +++ L+  D L+GL N  +F  +                +   D+D+FK +ND 
Sbjct: 393 LESLNQQLAHLATTDPLTGLANRRSFFEAAERELGRSRRAGYATVVAMLDLDHFKDVNDT 452

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD+++  +S  LV        VGRLGGEEF    +  S   A  +   +R  +  
Sbjct: 453 HGHAAGDRILELVSRVLVKELRDADLVGRLGGEEFGLLLVDVSVAHAREIVERIRTRV-- 510

Query: 206 SQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
             ++  +G  + +T+SAGIA+       +   +  AD+ALY AK+ GRNRV+
Sbjct: 511 --MHCDTGLDLSVTLSAGIADCDPAMLGLDVAMALADRALYEAKRQGRNRVI 560


>gi|149177002|ref|ZP_01855611.1| GGDEF domain-like protein [Planctomyces maris DSM 8797]
 gi|148844257|gb|EDL58611.1| GGDEF domain-like protein [Planctomyces maris DSM 8797]
          Length = 657

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 16/190 (8%)

Query: 83  GYISGSILKE----LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
            +   ++++E    L     ++   +  D L+   N S F  +            + + I
Sbjct: 317 AFARQAVIEEQKNKLESENKQLQSKAIHDPLTKTYNRSYFNENFEKELYSCSRDAQPIGI 376

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +F DID FK +ND +GH  GD V+  ++              R GGEEF       +E  
Sbjct: 377 IFSDIDRFKNLNDTYGHQFGDLVLQRVAKVASESTRRSDVFCRYGGEEFVIMVNNPTENG 436

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI----STIIYRADQALYVA 247
              LA  LRK+IEN  I    G  + +T S G         +      ++  AD+A+Y +
Sbjct: 437 IRDLAERLRKLIENEVIEF-EGARVPVTASLGAVVGIPPRDLTGFAERLVAEADEAMYES 495

Query: 248 KKSGRNRVVC 257
           K++GRN+V  
Sbjct: 496 KENGRNQVHV 505


>gi|189425756|ref|YP_001952933.1| diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ]
 gi|189422015|gb|ACD96413.1| diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ]
          Length = 324

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 8/169 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           + +  + +L+ +D L+   N           +     Y   + ++F DID+FK  ND +G
Sbjct: 140 LEFEELQRLALLDPLTETANRRYLEMKLQADLDKFQRYGIGVGVIFADIDHFKAFNDTYG 199

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD ++  ++  L     +    GR GGEEF      +     A LA  LR+++E+  
Sbjct: 200 HGLGDDILRVVARTLQGNVRSSDLAGRWGGEEFLIVVPHADAARLARLAEKLRRLVESC- 258

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +     +  TIS G A     + +  ++ RADQ LY AK++GRN ++
Sbjct: 259 FVMHQEQRVTTTISMGTAVAHQGDTLEGLLERADQMLYKAKRAGRNCIM 307


>gi|117619871|ref|YP_855827.1| sensor histidine kinase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117561278|gb|ABK38226.1| sensor histidine kinase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 517

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 96/219 (43%), Gaps = 9/219 (4%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLG--YISGSILKEL--FISYNRISQLS 104
           F + I  T    L  I + +L   ++  +   L+   +++ ++L  L       ++  LS
Sbjct: 294 FQYAIPDTELTLLHRIPLPSLLWALLCQSAPTLIALFFMAWAVLANLKSRRLNRQLDYLS 353

Query: 105 RIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           R D L+G  N          + ++   L ++ FD D+FKQ+ND FGH VGD+V+  L   
Sbjct: 354 RHDALTGAFNRHYLDEFERRHQQRGGSLGVIMFDCDHFKQVNDRFGHEVGDQVLIQLVRL 413

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                     + R GGEEF         +    LA  LR  I        + P++ +T+S
Sbjct: 414 CQQHLRREDALIRWGGEEF-LLLAAKGGEPLDQLAEQLRLRIARYPWQELA-PALAVTVS 471

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            G         +   I RAD ALY AK +GRNR   + D
Sbjct: 472 LGYHHSTTDTQLQEAIRRADVALYQAKANGRNRSERWQD 510


>gi|332098146|gb|EGJ03119.1| protein gmr domain protein [Shigella dysenteriae 155-74]
          Length = 404

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 91/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 176 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 235

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 236 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 294

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    +TII  AD A+Y AK+ GR +   F
Sbjct: 295 --LTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSATIIRHADTAMYTAKEGGRGQFCVF 352

Query: 259 SDIENN 264
           +   N 
Sbjct: 353 TPEMNQ 358


>gi|327194331|gb|EGE61191.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 567

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 55/181 (30%), Positives = 91/181 (50%), Gaps = 7/181 (3%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQIND 144
           + KEL  S       +  D L+GLLN  +F        G  + K++++  D+D+FK+IND
Sbjct: 124 LNKELERSRAEARFAADHDHLTGLLNRRSFDFALSELAGQESVKVALLHIDVDHFKEIND 183

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH VGD V+  +S  L+          RLGG+EFA             + + +++ +E
Sbjct: 184 RFGHAVGDLVLCHVSKILLEAISAGDVAARLGGDEFAVVITEDECDRTIAVLDHIQRRLE 243

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            S + +    ++ +  S G+A        + ++ ++D ALY AK++GRNR   FSD   +
Sbjct: 244 -SPLPVGD-QTLIVRCSIGVASAMSA-DFARLLSQSDLALYHAKRNGRNRAEIFSDEMAS 300

Query: 265 T 265
           T
Sbjct: 301 T 301


>gi|326385333|ref|ZP_08206978.1| PAS:GGDEF domain-containing protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326210139|gb|EGD60911.1| PAS:GGDEF domain-containing protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 693

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 11/179 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
            + E   S   I + +  D ++GL N   F   L            +L+++F D D FK+
Sbjct: 246 DVTEQRKSQEAIWRHANFDMMTGLPNRRMFYERLERDILSSAVEERRLAVIFLDFDNFKE 305

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH  GD+V+   + +L         +GRL G+EF       S ++   + N +++
Sbjct: 306 INDAFGHDKGDEVLREAARRLKSHLRESDVIGRLSGDEFTLILR--SFRDDQEIDNVVQR 363

Query: 202 IIENSQINISSGPSI-HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           ++         G  I H + S GIA           +I  ADQA+Y AK  G+ R   F
Sbjct: 364 LLATLSEPYRFGADILHASASVGIAVYPDDGAAADELIRHADQAMYEAKAQGQGRFSHF 422


>gi|268679299|ref|YP_003303730.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617330|gb|ACZ11695.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 417

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 54/166 (32%), Positives = 86/166 (51%), Gaps = 8/166 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           +I  +++ D LSGL N   F  ++  Y        E  ++   D+D FKQIND  GH VG
Sbjct: 252 KIKDMAQNDFLSGLANRRYFFDAMQEYFKEARKQKESFALGLIDVDKFKQINDTLGHRVG 311

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+VI  L+  L        F+ R+GG+EF        +++A      L+  +   +I +S
Sbjct: 312 DQVIVALAKTLKEQLTHDHFIARIGGDEFCLVLKDIEQKKALEFFIKLQCAVAKIEIPVS 371

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   + +++S G+      E +  +I +AD+ALY AKK+GRNRV  
Sbjct: 372 AEEKVGVSVSIGVT-FNDLESVEEMINQADKALYKAKKNGRNRVEV 416


>gi|218553843|ref|YP_002386756.1| RNase II stability modulator [Escherichia coli IAI1]
 gi|218694861|ref|YP_002402528.1| RNase II stability modulator [Escherichia coli 55989]
 gi|256018465|ref|ZP_05432330.1| RNase II stability modulator [Shigella sp. D9]
 gi|300819000|ref|ZP_07099204.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
 gi|300926672|ref|ZP_07142448.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|301326985|ref|ZP_07220274.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|332279518|ref|ZP_08391931.1| RNase II stability modulator [Shigella sp. D9]
 gi|218351593|emb|CAU97305.1| modulator of Rnase II stability [Escherichia coli 55989]
 gi|218360611|emb|CAQ98169.1| modulator of Rnase II stability [Escherichia coli IAI1]
 gi|300417338|gb|EFK00649.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|300528461|gb|EFK49523.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
 gi|300846368|gb|EFK74128.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|332101870|gb|EGJ05216.1| RNase II stability modulator [Shigella sp. D9]
          Length = 661

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|194436632|ref|ZP_03068733.1| diguanylate cyclase [Escherichia coli 101-1]
 gi|253773539|ref|YP_003036370.1| diguanylate cyclase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|260855209|ref|YP_003229100.1| putative diguanylate cyclase [Escherichia coli O26:H11 str. 11368]
 gi|260867930|ref|YP_003234332.1| putative diguanylate cyclase [Escherichia coli O111:H- str. 11128]
 gi|300929571|ref|ZP_07145035.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
 gi|166227580|sp|Q320T0|YDDV_SHIBS RecName: Full=Diguanylate cyclase yddV; Short=DGC
 gi|194424664|gb|EDX40650.1| diguanylate cyclase [Escherichia coli 101-1]
 gi|253324583|gb|ACT29185.1| diguanylate cyclase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|257753858|dbj|BAI25360.1| predicted diguanylate cyclase [Escherichia coli O26:H11 str. 11368]
 gi|257764286|dbj|BAI35781.1| predicted diguanylate cyclase [Escherichia coli O111:H- str. 11128]
 gi|300462486|gb|EFK25979.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
 gi|313848636|emb|CAQ31978.2| diguanylate cyclase, subunit of DosC-DosP complex [Escherichia coli
           BL21(DE3)]
 gi|323962340|gb|EGB57928.1| GGDEF domain-containing protein [Escherichia coli H489]
 gi|323973669|gb|EGB68845.1| GGDEF domain-containing protein [Escherichia coli TA007]
 gi|324119398|gb|EGC13284.1| GGDEF domain-containing protein [Escherichia coli E1167]
          Length = 460

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 281 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 339 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 399 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 456


>gi|218676260|ref|YP_002395079.1| putative signal transduction protein [Vibrio splendidus LGP32]
 gi|218324528|emb|CAV26010.1| putative signal transduction protein [Vibrio splendidus LGP32]
          Length = 795

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 112/247 (45%), Gaps = 11/247 (4%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL-SLVIISITISLLLG 83
           ++F I  S F S+  A   +I +  L+ +G T    ++ I  +   +L  + + +     
Sbjct: 286 YSFCIDDSAFPSLVSAK--YIPDYKLWVVGRTDLAHVDGIFAKEFGALFFVFVVLQFGFY 343

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS----YNEKLSIVFFDIDYF 139
           ++  SI K    + +++   +  D L+ L N S    ++G      +E  S++F DID F
Sbjct: 344 FLVKSIAKNEQRTRSQLIYQANHDPLTSLPNRSYMRKNIGKWIEDESEPFSLLFIDIDNF 403

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND  GH  GDKV+  ++ +L+        + R   +EF      SSE E   L+  +
Sbjct: 404 KCVNDTHGHDFGDKVLKQIALRLMRFRSRVSLLVRESSDEFLFLTPLSSESEIKRLSERI 463

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +++  SQ          ++ S GIA    H   + +++  AD ++Y AK+  +N    F
Sbjct: 464 IEVL--SQPYEVESAQFLLSCSVGIARFPDHGRDLDSLLRSADISMYKAKQQ-QNSYSIF 520

Query: 259 SDIENNT 265
           +    + 
Sbjct: 521 TTEMQDA 527


>gi|145297211|ref|YP_001140052.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142849983|gb|ABO88304.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 386

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 11/192 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKL 129
             SL   + +  ++ EL +    +   SR+D L+G+ N +                   L
Sbjct: 188 VASLYHRFSNADLVAELKLVSEHLKLTSRLDGLTGIANRAHLDYCLERAWRRCHRARAPL 247

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSS 188
           S+V  D+DYFKQ ND +GH  GD+ +  ++  L  V      +  R GGEEFA     +S
Sbjct: 248 SLVLVDVDYFKQFNDLYGHQQGDECLQRVAALLAEVQRREDDLAARYGGEEFALLLPCTS 307

Query: 189 EQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAERCHKE--PISTIIYRADQALY 245
            Q A  +A ++R  +++  I       S  ++ S G+A     +   I+ +I +AD ALY
Sbjct: 308 MQGALQIAENVRMALKDLGIPHQKSLVSGRVSCSFGVATLVPDQSGSIAELIQKADAALY 367

Query: 246 VAKKSGRNRVVC 257
            AK +GR+R+  
Sbjct: 368 QAKHNGRDRIEV 379


>gi|324010125|gb|EGB79344.1| diguanylate cyclase domain protein [Escherichia coli MS 57-2]
          Length = 364

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 107/230 (46%), Gaps = 21/230 (9%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY------GLEYILVENLSLVIISITISLLLGYISGSIL 90
           +F+A ++ +    L  + LT          LE+     LSL II +   LL G++S    
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAQLEW----WLSLPII-VIYPLLFGWVSYQTA 196

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
            +L     R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IN
Sbjct: 197 TKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSIN 256

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +
Sbjct: 257 DTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGL 316

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGR 252
              ++   + P + + IS G+A    +       +  AD ALY AKK+ R
Sbjct: 317 NTLRLP--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKARR 364


>gi|301632629|ref|XP_002945384.1| PREDICTED: uncharacterized protein y4lL-like, partial [Xenopus
           (Silurana) tropicalis]
          Length = 530

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 16/189 (8%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + E  ++  +I +L+  D L+GL N    +  L           ++ +++F D+D FK 
Sbjct: 344 DITERKLAAQQIERLAFYDALTGLPNRRLLLDRLQRSIVLSQRTRQQGALLFIDLDNFKV 403

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI------L 195
           +ND  GH +GDK++  ++ +LVV       V RLGG+EF       S   A +      +
Sbjct: 404 LNDTLGHDMGDKLLIEVARRLVVAVRESDTVARLGGDEFVVMLEHLSCDTAEVVSRVEGV 463

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           A  L   +  +Q  +  G   + + S GIA    +   ++ ++ RAD A+Y AK +GRN 
Sbjct: 464 AEKLLAHV--NQPIVLGGRDHYNSSSIGIALFGGERVEVNELLKRADMAMYEAKAAGRNT 521

Query: 255 VVCFSDIEN 263
           +  F     
Sbjct: 522 LRFFDPSMQ 530


>gi|94498253|ref|ZP_01304813.1| GGDEF family protein [Sphingomonas sp. SKA58]
 gi|94422255|gb|EAT07296.1| GGDEF family protein [Sphingomonas sp. SKA58]
          Length = 598

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 7/165 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  ++ +D L+GL N   F                 LS +  DID+FKQ NDN GH  GD
Sbjct: 427 LRDMAMVDPLTGLPNRRQFDLLFSRLAQEADRNATPLSCLMIDIDHFKQFNDNHGHDAGD 486

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++  +   L           RLGGEEF     G S  +A   A  ++K +++ +++   
Sbjct: 487 AILRAVGALLNDSLREEGHAFRLGGEEFVVLMPGFSLDQALARAEQIQKQLQDLRVDHGG 546

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                +T S G++          ++  AD AL  AK  GR+RV+ 
Sbjct: 547 TALGPVTASFGLSAFPDHGRADRLLKTADAALLRAKAQGRDRVLV 591


>gi|114562172|ref|YP_749685.1| diguanylate cyclase/phosphodiesterase [Shewanella frigidimarina
           NCIMB 400]
 gi|114333465|gb|ABI70847.1| diguanylate cyclase/phosphodiesterase [Shewanella frigidimarina
           NCIMB 400]
          Length = 678

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
             IL +   + N++ +++  D L+GL N +  + +L         +    +++F D+D F
Sbjct: 232 NQILLQFSQTQNKLRKMATRDPLTGLPNRTLLLETLNVTIQRSRVHKRNFALLFIDLDRF 291

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K +ND+ GH +GD+ +A ++  L  V G    V RLGG+EF   A    +  +AA   + 
Sbjct: 292 KNVNDSLGHALGDQFLARIARILERVVGDRGSVVRLGGDEFVILADEIQTPAQAADFVDK 351

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L  +I+ +     +  +IH   S GI+           +I  AD A+Y AK +G N+   
Sbjct: 352 L--LIQLNTPIQLNEHAIHPAASIGISIYPEDGNTAEDLIRHADIAMYSAKAAGSNQWSF 409

Query: 258 FSDIENNTC 266
           F        
Sbjct: 410 FKQQMTERA 418


>gi|332307971|ref|YP_004435822.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175300|gb|AEE24554.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 627

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/219 (25%), Positives = 94/219 (42%), Gaps = 9/219 (4%)

Query: 46  ANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR 105
           AN  L +      + L      N+ L    I + LL+  +   ++  +      + +L+ 
Sbjct: 402 ANQLLEHQNRLQRFALNAQEQRNMYL-WSFIAVVLLVCCLLAVMVYRVKSQSRALVKLAT 460

Query: 106 IDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+GL N    I  L         Y   L +   D+D+FK+IND++GH VGD+V+   
Sbjct: 461 TDDLTGLYNRRYIIEQLDRQVIAANRYGYDLCVAIIDLDFFKKINDSYGHAVGDQVLLEF 520

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           S            +GR+GGEEF      ++ Q+     + LR  +     ++     + I
Sbjct: 521 SSVCSENLRRTDLLGRIGGEEFLVLLPHTTLQDGYNALDSLRCKVSQMS-DVVGIEGLSI 579

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + S G+           ++  AD ALY AK  GR++V+ 
Sbjct: 580 SASVGLTFNAPNLDGMQLMANADIALYQAKTGGRDQVII 618


>gi|330894558|gb|EGH27219.1| response regulator WspR [Pseudomonas syringae pv. mori str. 301020]
          Length = 334

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+GL N   F   L            +LS++  D+DYFK  N
Sbjct: 156 QQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRAIRDQAQLSLLMIDVDYFKAYN 215

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DNFGH  GD+ +  ++  +            R GGEEFA     +S   A +LA  LR+ 
Sbjct: 216 DNFGHLEGDEALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQS 275

Query: 203 IENSQI-NISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
           +    I +I+  P   +T+S G+A            +I  AD+ LY+AK +GRN+V  
Sbjct: 276 VSGMNIPHIAPTPGSSLTVSIGVATVTPQVGMHSRQLILDADKGLYLAKNNGRNQVAA 333


>gi|323156581|gb|EFZ42727.1| diguanylate cyclase domain protein [Escherichia coli EPECa14]
 gi|323176588|gb|EFZ62180.1| diguanylate cyclase domain protein [Escherichia coli 1180]
          Length = 458

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 279 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 336

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 337 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 396

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 397 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 454


>gi|331662969|ref|ZP_08363879.1| diguanylate cyclase YddV (DGC) [Escherichia coli TA143]
 gi|331058768|gb|EGI30745.1| diguanylate cyclase YddV (DGC) [Escherichia coli TA143]
          Length = 460

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 281 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 339 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 399 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 456


>gi|300922702|ref|ZP_07138795.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|301325063|ref|ZP_07218603.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|309796150|ref|ZP_07690561.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
 gi|300420952|gb|EFK04263.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|300848039|gb|EFK75799.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|308120211|gb|EFO57473.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
 gi|320201772|gb|EFW76348.1| Putative Heme-regulated two-component response regulator
           [Escherichia coli EC4100B]
          Length = 460

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 281 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 339 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 399 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 456


>gi|222080887|ref|YP_002540250.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
 gi|221725566|gb|ACM28655.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
          Length = 766

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 83/178 (46%), Gaps = 10/178 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
              +  RI  L+  D L+G+ N +     L        S   ++++ F D+D FK +ND+
Sbjct: 319 RHRAEARIGFLADHDPLTGMANRALLDRKLTFAMQTADSTRSEVALAFLDLDNFKLVNDS 378

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD+++  ++ ++  +      + R+GG+EF         +      + +R+ +  
Sbjct: 379 LGHSVGDQLLKIVASRISELTSDQGSLARIGGDEFVIILEQMDLESCLDRLSAIREAV-- 436

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           ++  + +   + +T S G+A    H      ++  AD A+Y AK+ GR+ +  F+   
Sbjct: 437 TRPIVLNDIELRVTCSIGVASYPSHGSTAGELLASADMAMYRAKELGRDGIALFTSAM 494


>gi|229916953|ref|YP_002885599.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
 gi|229468382|gb|ACQ70154.1| diguanylate cyclase [Exiguobacterium sp. AT1b]
          Length = 358

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 70/237 (29%), Positives = 106/237 (44%), Gaps = 12/237 (5%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI-ISITISLLLGYISGS 88
            F    ++ +   +          GLT +     +LV  +S  I I ITI  +  Y+   
Sbjct: 127 LFKFGITLNLLACLIAGVAIYTSAGLTEYAAYVALLVTLISFPIGILITIMNIDLYLINH 186

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDN 145
            +KE  IS       +  D L+GL N  A+   +    E+    +++  DID+FKQIND 
Sbjct: 187 RVKEYKIS-------AETDHLTGLENRRAWEMQMKKIKERYDTCNVLILDIDHFKQINDR 239

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD+++   S+ L           R+GGEEF       S+ E   +A  +R  I  
Sbjct: 240 YGHANGDEILKQFSELLHRETRDHDIKARIGGEEFGILIPMLSQSEVIGVAERIRSSISK 299

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
               +     IHI++S GIA     E +  +++ AD  LY AK SGRNR      +E
Sbjct: 300 HAFKLLDQQVIHISVSIGIA-NGKSEQLHEMVHLADDCLYQAKNSGRNRTHIHGGVE 355


>gi|78777974|ref|YP_394289.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78498514|gb|ABB45054.1| response regulator receiver modulated diguanylate cyclase
           [Sulfurimonas denitrificans DSM 1251]
          Length = 414

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           E   + + I+  +  D L+GL N   F            +     +I   DID+FK+IND
Sbjct: 242 EALENIHAITNNANRDFLTGLYNRRYFFNNMYPYFEKALTNGNHFAIAMIDIDFFKKIND 301

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH +GDK I  L+D L         V R GGEEF       + Q+A     +LR+ +E
Sbjct: 302 TYGHEMGDKTINKLADILRANTSQDDIVARFGGEEFCIVLKNKTPQQALSHFENLREKVE 361

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           NS +++     I  TIS G+     ++ +   I +AD  LY AK++GRNR+
Sbjct: 362 NSFLSLGDEEKITFTISIGV-LLSPEDTLDESINQADMLLYNAKQNGRNRI 411


>gi|209546696|ref|YP_002278614.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537940|gb|ACI57874.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 648

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 63/264 (23%), Positives = 105/264 (39%), Gaps = 29/264 (10%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS 86
           FM+  ++FFS      +  ++  L    +T            L+  +  I+  +   +++
Sbjct: 133 FMMGANLFFSFPFRLSVITSSFVLGAFFVTIEAFFPSSQTYKLAFGMFYISCFVFTSFVN 192

Query: 87  GSILKE-----LFISYNRISQ------------LSRIDCLSGLLNHSAFISSLGS----- 124
             +  E     L  +  R               LS  D L+G+ N  A    L       
Sbjct: 193 WRLNVERRNVLLNAAEARYQHWEASERGRSLLELSNTDYLTGISNRRALDRRLDECWAAW 252

Query: 125 --YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFA 181
                   ++  D+D+FK+ ND +GH  GD+ +  ++  L   V  +   +GR GGEEF 
Sbjct: 253 KDERRDFVVLLIDVDFFKRFNDRYGHQEGDRCLTVIAKVLKAVVESSGGMIGRYGGEEFI 312

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIH--ITISAGIAERCH--KEPISTII 237
                 + + A  LA  +R  +E   I     P     +T+S G+A       E +  ++
Sbjct: 313 VVLPVQTPKIAMSLAEKIRMEVEFLAIEHDGRPDDSPIVTVSIGVAFTRDNVGEKVERLV 372

Query: 238 YRADQALYVAKKSGRNRVVCFSDI 261
             AD ALY AK SGRN +  F  +
Sbjct: 373 READLALYHAKASGRNCIRRFDPL 396


>gi|182417814|ref|ZP_02949128.1| ggdef/hd domain protein [Clostridium butyricum 5521]
 gi|237669067|ref|ZP_04529051.1| ggdef/hd domain protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182378277|gb|EDT75809.1| ggdef/hd domain protein [Clostridium butyricum 5521]
 gi|237657415|gb|EEP54971.1| ggdef/hd domain protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 558

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 101/221 (45%), Gaps = 17/221 (7%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           P   +     ++L L  I    +L LG+     +K       ++  +  ID L+ L NH 
Sbjct: 148 PSSEISAYFQDDLLLAGIFFLTALPLGFY----VKIEKQHIEKLENMINIDGLTELYNHR 203

Query: 117 AFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            F  SL          N  +S++F DIDYFK  ND +GH  GD V+  +   +    G  
Sbjct: 204 YFCDSLAEEIKIGEKENSPVSMIFIDIDYFKNYNDIYGHQKGDYVLKKIGKIIKSSIGNQ 263

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERC 228
               R GGEEFA     ++E  A  +A  LRK IEN+      + P+  +T+S G++   
Sbjct: 264 HISARYGGEEFAIILPDTTEDMAVNIAESLRKKIENTYFEGEENQPNGKLTVSMGVSVYP 323

Query: 229 HKEPIS-TIIYRADQALYVAKKSGRNRVVCF----SDIENN 264
            K      +I  AD ALY AK   +NRV  +     +I++N
Sbjct: 324 DKARSDIELIKSADDALYRAKFFYKNRVETYISILDEIKSN 364


>gi|157374862|ref|YP_001473462.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157317236|gb|ABV36334.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 420

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 63/175 (36%), Positives = 92/175 (52%), Gaps = 11/175 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++   + +D L+G+ N   F S               L++   DID FK +ND +GH V
Sbjct: 247 RKLWDQANLDYLTGVYNRRYFFSQYEELIILKKQKRGALTLALLDIDLFKGVNDTYGHDV 306

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+   + +L   FG    V R GGEEF  A  G +E ++  L +  R  +E+  I+ 
Sbjct: 307 GDEVLVEFAARLKRSFGQHFTVSRFGGEEFIVAFRGLNEVKSFALMDKFRSQLESKPIST 366

Query: 211 SSGPSIHITISAGIAERCHK---EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           S G  + +T+SAGIA        E + T+I RAD+ALY AK++GRN V   SD E
Sbjct: 367 SRG-ELSVTVSAGIASLSDDESEESLDTLIQRADKALYDAKEAGRNLVCIESDHE 420


>gi|119470954|ref|ZP_01613538.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Alteromonadales bacterium TW-7]
 gi|119445976|gb|EAW27256.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Alteromonadales bacterium TW-7]
          Length = 362

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 71/277 (25%), Positives = 124/277 (44%), Gaps = 28/277 (10%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIF------IATVIFIANIFLFYIGLTP 57
           SL   L I++     + +       +Y+ +F+ +       +   ++++  FL    L  
Sbjct: 86  SLITMLIIFIMCIALIYTGGKENTALYWLMFYPVVTFATLGVKLGLWLSG-FLLVCCLGL 144

Query: 58  FYG-----LEYILVE------NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            YG     ++Y  VE      + SLV I   I     Y S   + E+ ++  +    +  
Sbjct: 145 LYGPNLGQVDYGFVEKSRFMASFSLVFIFSLIGEFFRYKSHQSIAEITLAQKK---DAYT 201

Query: 107 DCLSGLLNHS----AFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G  N       F   +    +     SI+  D+D+FK INDN+GH  GD V+   +
Sbjct: 202 DQLTGAANRRFVTSHFFKLVSDNPDNYLPFSILLLDLDHFKSINDNYGHDSGDTVLIEFT 261

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L   F +     R GGEEF      ++ Q A  +AN+ R+ + N+ +      ++ +T
Sbjct: 262 KMLESHFSSDSIKARYGGEEFVVILPKATIQIAEHIANNFRESVANTTLLNVESKNVALT 321

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            S G+A+       +  + +AD+ LY AK++GRN+VV
Sbjct: 322 CSIGVAQVNKLSDYNDALKQADRCLYKAKETGRNKVV 358


>gi|91210581|ref|YP_540567.1| RNase II stability modulator [Escherichia coli UTI89]
 gi|110641521|ref|YP_669251.1| RNase II stability modulator [Escherichia coli 536]
 gi|117623544|ref|YP_852457.1| RNase II stability modulator [Escherichia coli APEC O1]
 gi|191170882|ref|ZP_03032433.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli F11]
 gi|218558276|ref|YP_002391189.1| RNase II stability modulator [Escherichia coli S88]
 gi|237705314|ref|ZP_04535795.1| RNase II stability modulator [Escherichia sp. 3_2_53FAA]
 gi|300971816|ref|ZP_07171650.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1]
 gi|91072155|gb|ABE07036.1| hypothetical protein YciR [Escherichia coli UTI89]
 gi|110343113|gb|ABG69350.1| hypothetical protein YciR [Escherichia coli 536]
 gi|115512668|gb|ABJ00743.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|190908614|gb|EDV68202.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli F11]
 gi|218365045|emb|CAR02748.1| modulator of Rnase II stability [Escherichia coli S88]
 gi|226900071|gb|EEH86330.1| RNase II stability modulator [Escherichia sp. 3_2_53FAA]
 gi|300309322|gb|EFJ63842.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1]
 gi|307627138|gb|ADN71442.1| RNase II stability modulator [Escherichia coli UM146]
 gi|315289128|gb|EFU48526.1| diguanylate cyclase domain protein [Escherichia coli MS 110-3]
 gi|320195698|gb|EFW70323.1| RNase II stability modulator [Escherichia coli WV_060327]
 gi|323949109|gb|EGB45001.1| EAL domain-containing protein [Escherichia coli H252]
 gi|324006099|gb|EGB75318.1| diguanylate cyclase domain protein [Escherichia coli MS 57-2]
 gi|324011295|gb|EGB80514.1| diguanylate cyclase domain protein [Escherichia coli MS 60-1]
          Length = 661

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     LA+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEALASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|238755553|ref|ZP_04616891.1| Diguanylate cyclase [Yersinia ruckeri ATCC 29473]
 gi|238706233|gb|EEP98612.1| Diguanylate cyclase [Yersinia ruckeri ATCC 29473]
          Length = 376

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 66/255 (25%), Positives = 117/255 (45%), Gaps = 13/255 (5%)

Query: 20  ESFSPHTFMIYFSIFFSIFIATV------IFIANIFLFY---IGLTPFYGLEYILVENLS 70
           + F+    +I F +   +F          +F   I L     + ++ F+     L   + 
Sbjct: 101 DGFTLDNLLILFIVLPLLFSKVWTRKNNRVFYTTILLIMFYRLAVSAFFVDYKDLWPAIM 160

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS---AFISSLGSYNE 127
           +  +S T+ L + Y + +  +    +Y  +   + ID L+ L N +    +++ L +   
Sbjct: 161 VFQLSSTLCLAICYHALNFKERHIHAYFSMKDRANIDNLTRLNNRASVDFYLAQLHAQRR 220

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
              ++  D+D FK INDN+GH +GD+++  +   L        FVGR GGEEF       
Sbjct: 221 ACGLLLMDLDKFKAINDNYGHAIGDQILTSVGAILKQTVRCLDFVGRFGGEEFIVITESH 280

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
             +    +A  LR+ +E  ++ ++ G  +H+TIS G +       +   I  AD ALY A
Sbjct: 281 HPEHIKKIAECLRENVEQLKVTLNDGREMHVTISIGASLYLPGMSMLKAIEMADDALYQA 340

Query: 248 KKSGRNRVVCFSDIE 262
           K  GRN+VV +S + 
Sbjct: 341 KNQGRNQVV-YSKLM 354


>gi|168788396|ref|ZP_02813403.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O157:H7 str. EC869]
 gi|261224271|ref|ZP_05938552.1| RNase II stability modulator [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261257473|ref|ZP_05950006.1| RNase II stability modulator [Escherichia coli O157:H7 str.
           FRIK966]
 gi|189371806|gb|EDU90222.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O157:H7 str. EC869]
          Length = 661

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|158334888|ref|YP_001516060.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acaryochloris marina MBIC11017]
 gi|158305129|gb|ABW26746.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Acaryochloris marina MBIC11017]
          Length = 705

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 85/173 (49%), Gaps = 12/173 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQINDNFGHPVGDK 153
            ++  D L+GL + + F+  L     +         +++F D D FK IND+ GH +GD+
Sbjct: 259 HVALYDHLTGLPSRALFLDQLHRTLTRVNRQTNYLFAVLFLDCDRFKVINDSLGHAIGDQ 318

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISS 212
           ++  ++ +L         + RLGG+EFA      + + +A  +A+ L + +E +      
Sbjct: 319 LLIEVAQRLTTALRPGDVIARLGGDEFAILLENIAGQDQAEQVASRLNRELEKA--FELQ 376

Query: 213 GPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           G +++I+ S GIA      P    ++  AD A+Y AK  G++R V F     +
Sbjct: 377 GHTVYISASIGIALNSDHSPQAENLLRDADNAMYRAKALGKSRYVVFEAAMRD 429


>gi|298500769|ref|ZP_07010572.1| PAS domain S-box/GGDEF domain-containing protein [Vibrio cholerae
           MAK 757]
 gi|297540550|gb|EFH76608.1| PAS domain S-box/GGDEF domain-containing protein [Vibrio cholerae
           MAK 757]
          Length = 684

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+GL N   F   L    +    L +++ DID FK IND+ GH +GDKVI  ++ 
Sbjct: 256 AHIDSLTGLYNRHGFTKRLEQCIQNETPLVMLYLDIDNFKNINDSLGHHIGDKVIKEVAA 315

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHIT 219
           +L  +      +G LGG+EF            A +LA+ +  +I  +Q       S  + 
Sbjct: 316 RLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLI--NQPFDLHHFSKRLA 373

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +           ++  AD A+Y AK+ GRNR++  +D  N   
Sbjct: 374 CSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKSNDQMNKEA 421


>gi|152989958|ref|YP_001355680.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
 gi|151421819|dbj|BAF69323.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
          Length = 878

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 26/213 (12%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           +++    L I  +   +L        +  +     ++   +  D L+GL N +  I  L 
Sbjct: 285 VMISGFPLSINGLQYYILFV----KDISRIKKQEKKLEYAAYHDPLTGLPNRALAIDRLQ 340

Query: 124 -------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                       +++++ D+D FK+IND +GH VGD  +  ++  L  V      + R+G
Sbjct: 341 VAMERAKRRGSMIAVLYIDLDGFKEINDKYGHQVGDIFLKKVAKNLQEVIRGEDTIARIG 400

Query: 177 GEEFAAAALGS-----SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA----ER 227
           G+EF            ++     +     K ++       +G  +  T S GI     E 
Sbjct: 401 GDEFLGIIQDIEMRSFNDSIFYRILEAASKTVD------INGHQLKATASIGITFFPREY 454

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              +    +I  AD A+Y AK +G+NR V F D
Sbjct: 455 NKDKDAEHLIREADIAMYKAKTTGKNRYVFFDD 487


>gi|78062557|ref|YP_372465.1| diguanylate cyclase [Burkholderia sp. 383]
 gi|77970442|gb|ABB11821.1| diguanylate cyclase (GGDEF domain) [Burkholderia sp. 383]
          Length = 602

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 96/184 (52%), Gaps = 11/184 (5%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFD 135
           G+I+ +  ++   +   + +++  D L+ L N  AF+         + +  +  +++  D
Sbjct: 420 GFITDATDRKHIEA--ELHRMATTDHLTQLSNRHAFMRQSEAALRAVRTTGQAAAVLMLD 477

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D+FK +ND +GHPVGD+ +   +  L+   G    VGR+GGEEFA    G+    A   
Sbjct: 478 LDHFKALNDRWGHPVGDRALRHFARLLLAETGPDGIVGRVGGEEFAIVLPGADLDRALAF 537

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  +++    +++     P + +T+S GI A R         + RAD+ALY+AK+ GRNR
Sbjct: 538 AQRVQQRAMQARLTHEDQP-VTLTVSIGIDAMRASDFGAYQPLSRADKALYLAKERGRNR 596

Query: 255 VVCF 258
           +  +
Sbjct: 597 IEVY 600


>gi|320449799|ref|YP_004201895.1| ggdef domain-containing protein [Thermus scotoductus SA-01]
 gi|320149968|gb|ADW21346.1| ggdef domain protein [Thermus scotoductus SA-01]
          Length = 311

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 103/231 (44%), Gaps = 37/231 (16%)

Query: 32  SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK 91
           + +  + + T + +     F+    P + +  +++  L+ +++                +
Sbjct: 107 AFWGGVLVLTPLLLGRNLDFW----PHFAVSQMILVGLTFLLV--------------RFR 148

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           EL        + +    L+GL N  A         + +       ++V  D+D FKQ+ND
Sbjct: 149 ELHGQMRFWREQALTCPLTGLPNRRALEMAMEREAARVERGEAPFALVLLDLDDFKQVND 208

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD+++  ++  LV        VGR GGEEFA     +  +EA  +A  +R+ ++
Sbjct: 209 TYGHQEGDRLLKEVAQYLVAHVRQGDLVGRWGGEEFALLLPRTRGEEAMQVAERIREGLK 268

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                      + IT S G+A    +  +  +  +AD+ALY+AK+ G++RV
Sbjct: 269 R----------LGITGSLGVAVY--EGDLKDLFQKADRALYLAKEGGKDRV 307


>gi|221196784|ref|ZP_03569831.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Burkholderia multivorans CGD2M]
 gi|221203453|ref|ZP_03576472.1| PAS fold family protein [Burkholderia multivorans CGD2]
 gi|221177387|gb|EEE09815.1| PAS fold family protein [Burkholderia multivorans CGD2]
 gi|221183338|gb|EEE15738.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Burkholderia multivorans CGD2M]
          Length = 749

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 13/177 (7%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQIND 144
             +  ++  L+  D L+GL N       +              +++I+F D+  FK++ND
Sbjct: 313 REAQQQLRYLATRDALTGLYNRRWLSDRMRELFGGRDPAGGPARVAILFLDLVGFKKVND 372

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD ++  ++ +L         + R+GG+EF        + EA  LA   R++I+
Sbjct: 373 TAGHDAGDALLRSVAARLAACMRGRHALTRVGGDEFVILVDDCDDPEA--LAALAREVID 430

Query: 205 N-SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++    +     + +S GI+      +  +T++  AD A+Y AK+ GRN    F+
Sbjct: 431 AIAKPFAVANNEYWLGVSIGISIAPRDGDDAATLMRNADSAMYDAKQRGRNHFTFFT 487


>gi|163850380|ref|YP_001638423.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163661985|gb|ABY29352.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 714

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 10/181 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQIND 144
            E + +  RI+ ++R D ++ L N       +             +++  D+D FKQ+ND
Sbjct: 273 TERWNAETRIAHMARHDAVTDLPNRVLLRERIEGAITRARRETGFAVLCLDLDNFKQVND 332

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
             GH VGD+++  ++ +L         V RLGG+EFA      ++  +AA LA  +  ++
Sbjct: 333 TLGHAVGDELLRAVAHRLRACLREVDTVARLGGDEFAIIQASVATPADAATLAQRILDVV 392

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             S     +  S+ + +S GIA           ++  AD ALY AK  GR     F    
Sbjct: 393 --SAPYALTHHSVIVGVSIGIALAPGDGLEPERLMQCADVALYRAKDDGRGVFRFFEAQM 450

Query: 263 N 263
           +
Sbjct: 451 D 451


>gi|327479480|gb|AEA82790.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 261

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 81/185 (43%), Gaps = 8/185 (4%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           +  IS      +      + + S +D L+G+ N       L         Y   L++V  
Sbjct: 78  VARISDRYQAMMQDLNASLREASMLDSLTGIANRRLLTERLREESERAKRYGRPLALVML 137

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID FK IND++GH VGD+V+  +   +          GR GGEEF       + Q A  
Sbjct: 138 DIDRFKIINDDYGHDVGDRVLIEVVRVMESEIREHDLCGRWGGEEFLILMPECTAQMAQT 197

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +   L   I    + ++    + +T S GIAE   +E  S  I RAD AL  AK+SGRNR
Sbjct: 198 VLGRLGASIAALGVRVNEDL-LGVTASMGIAELRPEETYSNTINRADLALLRAKRSGRNR 256

Query: 255 VVCFS 259
                
Sbjct: 257 CELAD 261


>gi|324117520|gb|EGC11426.1| EAL domain-containing protein [Escherichia coli E1167]
          Length = 661

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|320183844|gb|EFW58676.1| hypothetical protein SGF_03960 [Shigella flexneri CDC 796-83]
          Length = 652

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 210 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 269

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 270 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 328

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 329 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 386

Query: 259 SDIENN 264
           +   N 
Sbjct: 387 TPEMNQ 392


>gi|242279064|ref|YP_002991193.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
 gi|242121958|gb|ACS79654.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
          Length = 283

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 79/169 (46%), Gaps = 10/169 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPV 150
             +S  +  D L+GL N   F  +L    E        L++   D+D FK+IND +GH  
Sbjct: 87  QELSYKTEHDPLTGLSNRRVFERTLDQEIERTRRSKTPLTLAILDLDNFKKINDTWGHLK 146

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+   +D L         V R+GGEEFA    G    +A  L   L   +       
Sbjct: 147 GDEVLIDFADLLSQNSRRYDLVARIGGEEFAIILSGVGLVKAKQLLERLLDKVRGLTFAK 206

Query: 211 S-SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
             S  +  IT SAGI+       +    +I +AD+ALY AK+SG+++V 
Sbjct: 207 PGSNETFSITCSAGISCFKGMVEVEMHELISKADKALYEAKESGKDQVC 255


>gi|193222397|emb|CAL62813.2| Conserved hypothetical protein; putative GGDEF, PAS/PAC domains
           [Herminiimonas arsenicoxydans]
          Length = 310

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 11/176 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           +L      +  LS  D L+G+ N   F S + +        ++ LS++  DIDYFKQ ND
Sbjct: 132 KLIDLQKELETLSFKDGLTGVANRRMFDSIMAAEWANAKLNHQPLSVIMLDIDYFKQYND 191

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           ++GH  GD  +  +++ L         F  R GGEEF      + E  A  +A   R +I
Sbjct: 192 HYGHIQGDDCLKRVANILSSATRRSRDFFARFGGEEFILVLPETDELNAINIAERCRTLI 251

Query: 204 ENSQINISSGPSIH-ITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              +I       I  IT+S G+       K+     I   D+ LY AK+ GRN + 
Sbjct: 252 CKEKIPHEKSEVIPMITVSLGVGTVIPTDKDDPIRFIEEVDKRLYQAKQRGRNCIA 307


>gi|54307749|ref|YP_128769.1| sensory box/GGDEF family protein [Photobacterium profundum SS9]
 gi|46912172|emb|CAG18967.1| hypothetical sensory box/GGDEF family protein [Photobacterium
           profundum SS9]
          Length = 608

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 18/198 (9%)

Query: 84  YISGSILKELFISYNRI-------SQLSRIDCLSGLLNHSAFISSLG-------SYNEKL 129
            +    + E   +  ++        +LS ID L+ + N  +F   L           + L
Sbjct: 410 LVMARDVTERKATEQQLADAIMDLQELSFIDSLTKVANRRSFDEQLRKLWHGHVREQQPL 469

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSS 188
           +++  DIDYFK  NDN+GH  GD  +  ++  L   V      V R GGEEFA     + 
Sbjct: 470 TLILCDIDYFKAFNDNYGHQQGDIALQEVAKVLRNVVQRGTDEVARYGGEEFAFLLPNTD 529

Query: 189 EQEAAILANDLRKIIENSQINI-SSGPSIHITISAGIAE--RCHKEPISTIIYRADQALY 245
            +   I+A ++ + +    +    S  +  +T+S GIA       +    ++  AD ALY
Sbjct: 530 LKGGEIVAANIHQELATKGLTHGYSNVANTLTVSLGIASVIPLPSQDYGDLVGMADVALY 589

Query: 246 VAKKSGRNRVVCFSDIEN 263
            AK +GRN  +  SD ++
Sbjct: 590 KAKAAGRNCSMSISDNDD 607


>gi|89093125|ref|ZP_01166076.1| sensory box sensor/GGDEF/EAL domain protein [Oceanospirillum sp.
           MED92]
 gi|89082775|gb|EAR61996.1| sensory box sensor/GGDEF/EAL domain protein [Oceanospirillum sp.
           MED92]
          Length = 923

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 11/167 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
             +  D L+GL N +     L          ++K +++F D+D+FK+IND  GH VGD +
Sbjct: 489 YRANYDQLTGLPNRTLLHELLRQELQHSRRESKKCAVMFLDLDHFKRINDTLGHAVGDLL 548

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSG 213
           +  +S+ L         V RLGG+EF           + + +A  +  ++ ++ ++I   
Sbjct: 549 LQTVSELLQETIRESDVVARLGGDEFIVILSDVDNATDISTVAEKIVSVL-DTPLSIDD- 606

Query: 214 PSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFS 259
             I    S GIA           ++  AD A+Y AK+SGR +   F+
Sbjct: 607 HEIRTCTSIGIAVYPDDAFEEGELLSHADMAMYKAKESGRGQYRFFN 653


>gi|269962166|ref|ZP_06176519.1| GGDEF family protein [Vibrio harveyi 1DA3]
 gi|269832997|gb|EEZ87103.1| GGDEF family protein [Vibrio harveyi 1DA3]
          Length = 374

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 9/189 (4%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------K 128
           + ++L+L        K+L  +  ++  LS  D L+ L N  + I +L    +        
Sbjct: 178 LKLNLVLEEKVDERTKQLSNANKQLEALSLTDSLTQLPNRRSAIKTLKKLWKDEDARDLP 237

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L  +  D DYFKQ+ND  GH  GD V+  L+  L   F +   V RLGG+EF      + 
Sbjct: 238 LVCIMIDADYFKQVNDTCGHEAGDLVLTELAQALKHYFRSDDIVCRLGGDEFFVICPDTG 297

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247
            +    +A  +RK + +  +  S  P    +IS G+AER    E  + +I  AD+ +Y+A
Sbjct: 298 LEGGLHVAEAVRKQVSHMLVPTSVEPWRG-SISVGVAERRDNMETYTDLIRVADEGVYLA 356

Query: 248 KKSGRNRVV 256
           K++G+NRV 
Sbjct: 357 KQNGKNRVQ 365


>gi|218704961|ref|YP_002412480.1| putative diguanylate cyclase [Escherichia coli UMN026]
 gi|218432058|emb|CAR12946.1| putative diguanylate cyclase [Escherichia coli UMN026]
          Length = 347

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 168 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 225

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 226 EINDTWGHNTGDEILRKISQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 285

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 286 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 343


>gi|254478017|ref|ZP_05091401.1| PAS fold family protein [Carboxydibrachium pacificum DSM 12653]
 gi|214036021|gb|EEB76711.1| PAS fold family protein [Carboxydibrachium pacificum DSM 12653]
          Length = 793

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 20/224 (8%)

Query: 56  TPFYGLEYILV--ENLSLVIISITISL-------LLGYISGSILKELFISYNRISQLSRI 106
           TPFY  EY +   E   + ++S   +L       +    S + + E     +++  ++  
Sbjct: 276 TPFYLCEYRIKTKEGRYIWVLSRGKALWDEEGRAIRMAGSHTDITERKQMESKLKYMAFY 335

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL     F+  L           +KL++ F D+D FK IND+ GH +GD+++  ++
Sbjct: 336 DPLTGLPRREVFMDRLKIAMADAKRNGKKLAVFFVDLDNFKTINDSLGHHIGDRLLKKIA 395

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHI 218
            +L         V R+GG+EF        +  +   +AN + ++  N  I   +   +++
Sbjct: 396 KKLKACLRESDTVSRVGGDEFVILLPNIINIDDTNKVANRILELF-NQPIKF-NNHELYV 453

Query: 219 TISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           TIS GIA    H +    I+  AD A+Y AK+ G+N    F  I
Sbjct: 454 TISIGIAIYPDHGKNERAIVKNADIAMYKAKRDGKNSFQYFDSI 497


>gi|217328412|ref|ZP_03444494.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. TW14588]
 gi|217318839|gb|EEC27265.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. TW14588]
          Length = 296

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 22/258 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LV 66
            + +WL        F+   + I+  +    F A +  I+ +F+    ++ +Y    I +V
Sbjct: 43  MIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVV 102

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             L++++I +            I   L ++ N    ++  D L+ + N + F + L    
Sbjct: 103 SKLTVMVIFMC----------HIFSALRVTKN----IAHRDPLTNIFNRNYFFNELTVQS 148

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +      ++  DID+FK++ND +GHPVGD+VI  + + +         + R+GGEEF 
Sbjct: 149 ASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFG 208

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYR 239
                   + A  LA  +R+ +E    +         +TIS G +  + +    + I   
Sbjct: 209 VLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQGNALNPNEIYRL 268

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK++GRN+VV 
Sbjct: 269 ADNALYEAKETGRNKVVV 286


>gi|187928260|ref|YP_001898747.1| PAS/PAC sensor containing diguanylate cyclase [Ralstonia pickettii
           12J]
 gi|187725150|gb|ACD26315.1| diguanylate cyclase with PAS/PAC sensor [Ralstonia pickettii 12J]
          Length = 416

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 59/179 (32%), Positives = 86/179 (48%), Gaps = 12/179 (6%)

Query: 84  YISGS-ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFD 135
           Y+S S  + +       + + +  D L+GL N       L             L++V  D
Sbjct: 237 YVSVSKDITKRVEREQALLRAATKDKLTGLHNRHHGEQLLAERYRTARTLQRPLTLVMCD 296

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK+IND FGHP GD+V+A ++D L     +   V R GGEEF       S+ +   L
Sbjct: 297 IDHFKRINDEFGHPTGDRVLAEVADMLRQAVRSRDAVIRWGGEEFMIVLDECSQTDTVDL 356

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  +   +   +     G    +T+S G+A     E I  +I RAD ALY AK++GRNR
Sbjct: 357 AKRILDRVNAHE----DGEVPALTLSLGLATLAPDEAIDELIARADSALYDAKRAGRNR 411


>gi|94499135|ref|ZP_01305673.1| hypothetical protein RED65_10114 [Oceanobacter sp. RED65]
 gi|94428767|gb|EAT13739.1| hypothetical protein RED65_10114 [Oceanobacter sp. RED65]
          Length = 378

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 11/232 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF-- 94
           I +A +     + L    +   +    +     +++ + + I ++L   +      LF  
Sbjct: 134 ILVALLSIHGLVMLLQASIIALHSFNVLAQSTSNVMPVILLIHIMLATCTALFFPLLFFM 193

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFG 147
            + + +  L+  D L+G+ N   F       +++       LS++  DID+FK +ND +G
Sbjct: 194 RNEDHLVGLASYDPLTGVFNRRGFFDQWQILSKRTHDKSCHLSVMMIDIDHFKHVNDKYG 253

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD  + +L+D L         + R+GGEEFA    G    +A I+A  LR  I  ++
Sbjct: 254 HEAGDAALKWLADLLAHELRENDVLARMGGEEFAVMLPGCESSQAEIVAERLRNCIFKTR 313

Query: 208 INISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +     I ITIS G I E      I  ++ +AD+ LY AK  GRNR + +
Sbjct: 314 F-VYLNQVIPITISLGFITEDQPITDIKGLLVQADKGLYKAKDLGRNRAMRY 364


>gi|107099158|ref|ZP_01363076.1| hypothetical protein PaerPA_01000168 [Pseudomonas aeruginosa PACS2]
 gi|296386656|ref|ZP_06876155.1| hypothetical protein PaerPAb_00930 [Pseudomonas aeruginosa PAb1]
 gi|313112258|ref|ZP_07798029.1| putative GGDEF domain-containing protein [Pseudomonas aeruginosa
           39016]
 gi|310884531|gb|EFQ43125.1| putative GGDEF domain-containing protein [Pseudomonas aeruginosa
           39016]
          Length = 275

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 11/178 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
             ++++L ++   + + S  D L+GL N    +  L         + +   +   D+D+F
Sbjct: 86  QQMMRDLNLA---LKEASIRDPLTGLPNRRMLLERLREENERSQRHGQSYVLAMLDVDFF 142

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQ+ND +GH  GD+V+  ++  +          GR GGEEF      +  Q+A  +   +
Sbjct: 143 KQVNDTWGHDSGDRVLVEIARAMESELREYDLCGRWGGEEFLLLLPQTRLQDAGPVLERV 202

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R  +    + + +  ++ +T S G+ E    E  S  + RAD AL  AK+SGR++ V 
Sbjct: 203 RDSVRTLAVRVGT-EALSVTASVGVTEHRIGETYSQTVNRADAALLDAKRSGRDKCVF 259


>gi|327482289|gb|AEA85599.1| two-component response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 531

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/160 (35%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 106 IDCLSGLLNHSA---FIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+GL NH+     +          N  LS    DID+FKQ+ND FGHP+GD+VI  L
Sbjct: 373 RDSLTGLYNHTHSLQLLEDARFRARRDNRPLSFAMLDIDHFKQVNDTFGHPMGDRVIKSL 432

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         +GR GGEEFA     +  + A  + N++R+     +   +    +  
Sbjct: 433 ALFLKQRLRKTDHIGRYGGEEFAVVLPDTPAEAACKVLNEIRQRFAEIRFP-AQPRDLSC 491

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           T S GI E      + T+  +AD+ALY AK +GRNRV  +
Sbjct: 492 TFSCGITELTADAEVKTLTQQADEALYRAKHAGRNRVERY 531


>gi|288959829|ref|YP_003450169.1| signal transduction protein [Azospirillum sp. B510]
 gi|288912137|dbj|BAI73625.1| signal transduction protein [Azospirillum sp. B510]
          Length = 624

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 10/192 (5%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFD 135
           G +    + ++    +RI+ L+  D L+GL N   F   L            +L+++  D
Sbjct: 158 GVLVFRDITQVKAVEDRIAWLAHFDPLTGLSNRVEFRRRLEMAIASARQDGSRLAVMLLD 217

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
            D FK+IND FGH VGD+++  ++ +L    G+   + RLGG+EF        +      
Sbjct: 218 FDGFKEINDQFGHAVGDELLVAVAGRLRDALGSGAVIARLGGDEFTILVEEDGDGTLTDA 277

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           ++ L + +      ++SG    +T S G        + I  ++  AD A+Y AK+ G + 
Sbjct: 278 SHTLIRALAE-PFPLTSGRH-RLTASIGAVRYPAEADTIDDLLRMADMAMYRAKERGGSA 335

Query: 255 VVCFSDIENNTC 266
           V  +        
Sbjct: 336 VCRYDPAMMAAA 347


>gi|118443867|ref|YP_878741.1| GGDEF domain-containing protein [Clostridium novyi NT]
 gi|118134323|gb|ABK61367.1| GGDEF domain protein, putative [Clostridium novyi NT]
          Length = 1804

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 59/161 (36%), Positives = 84/161 (52%), Gaps = 11/161 (6%)

Query: 106  IDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            ID L+G          L          N+K SI+ FD+D+FK +ND FGH VGDKV+  +
Sbjct: 1470 IDKLTGAYTRKYLEDKLSESIECANFNNDKFSIIMFDLDHFKNVNDTFGHQVGDKVLNNV 1529

Query: 159  SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
               ++         GR GGEEF +   G  E +A  +A  +R  +E+S+I    G    +
Sbjct: 1530 CGIVMKNLRDGDICGRYGGEEFISILPGIGESKALNIAERIRSAVEDSKI---LGEKHPV 1586

Query: 219  TISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCF 258
            TIS GI+    +  +   +I +ADQALY+AK SGRNR   +
Sbjct: 1587 TISIGISTYPQQAQLKRELIEKADQALYIAKDSGRNRCKVW 1627


>gi|116672311|ref|YP_833244.1| diguanylate cyclase/phosphodiesterase [Arthrobacter sp. FB24]
 gi|116612420|gb|ABK05144.1| diguanylate cyclase/phosphodiesterase [Arthrobacter sp. FB24]
          Length = 732

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 12/174 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQINDNFG 147
           S+  ++  +  D L+GL N +A +  L           N    ++F DID FK++ND+ G
Sbjct: 280 SHETLTHRATHDPLTGLANRAALMERLTASFGAGSTRRNRNEGLLFIDIDDFKEVNDSLG 339

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENS 206
           H  GD ++  L+ +L     +   V RLGG+EFA   +        A +A+ + + +   
Sbjct: 340 HERGDALLIQLAARLKGCVRSDDVVARLGGDEFAIVVMDDDAGSVTAWIADRIHRALRA- 398

Query: 207 QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                    + +T S G A+ R      + ++ +AD A+Y+AK  G+ R   F 
Sbjct: 399 -PFFVGDDRLTVTASMGAAQRRPETTDAAELLRQADFAMYLAKHGGKARFQLFD 451


>gi|262379338|ref|ZP_06072494.1| WspR [Acinetobacter radioresistens SH164]
 gi|262298795|gb|EEY86708.1| WspR [Acinetobacter radioresistens SH164]
          Length = 419

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 105/235 (44%), Gaps = 24/235 (10%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
           F I F + I + + + +    +   T     E IL  N  L  ++  I     YI  S  
Sbjct: 188 FHISFEVIILSRVLLGSCLFGFTLSTMLIKRERILFLNTKLAQLNEKIQ----YIHAS-- 241

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
                    +  LS+ D L+ + N   F  +L S           LS++F D+D+FK  N
Sbjct: 242 --------ELLHLSQHDELTQISNRRNFDETLDSFYRQSRKEGTPLSLLFIDVDFFKNYN 293

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH +GDKVI  ++  +        FV R GGEEF      +    A  +A+++ + I
Sbjct: 294 DFYGHQMGDKVIYSIARAIKNSIRHRDFVARYGGEEFVVLLPETEAHGAYAVASNIYREI 353

Query: 204 ENSQINISSGP-SIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRV 255
           E   I       + +IT+S GI     +  +    ++  ADQALY AK+ GRN++
Sbjct: 354 ERLAIPHERSCIASYITVSLGITIYRGEAAVTQEALLESADQALYRAKQLGRNQI 408


>gi|229154330|ref|ZP_04282450.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342]
 gi|228629154|gb|EEK85861.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342]
          Length = 566

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 88/173 (50%), Gaps = 6/173 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQA-- 250

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+
Sbjct: 251 PFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFT 303


>gi|157376517|ref|YP_001475117.1| diguanylate cyclase/phosphodiesterase [Shewanella sediminis
           HAW-EB3]
 gi|157318891|gb|ABV37989.1| diguanylate cyclase/phosphodiesterase [Shewanella sediminis
           HAW-EB3]
          Length = 677

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139
             IL +   + +++ +++  D L+GL N +  +            +  +  ++F D+D F
Sbjct: 231 NQILIQFGQTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRARVHKHQFCMLFIDLDRF 290

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND+ GH +GD+ +A ++  L  V G    V RLGG+EF   A    S  +AA   + 
Sbjct: 291 KNINDSLGHAIGDQFLARIARVLERVVGDNGTVARLGGDEFVILADEIRSPDQAADFVDK 350

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           L  +++ +     +  +IH   S GI+           +I  AD A+Y AK +G N+   
Sbjct: 351 L--LLQLNTPMQLNEHTIHPAASVGISIYPDDGMSAEDLIRHADIAMYSAKAAGSNQWAF 408

Query: 258 FSDIENNTC 266
           F        
Sbjct: 409 FKQQMTERA 417


>gi|119468623|ref|ZP_01611675.1| sensory box/GGDEF/EAL domain protein [Alteromonadales bacterium TW-7]
 gi|119447679|gb|EAW28945.1| sensory box/GGDEF/EAL domain protein [Alteromonadales bacterium TW-7]
          Length = 1485

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 9/188 (4%)

Query: 85   ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
            I  S L E   + N +  L+  D L+ L N S         I    S N   +++F D+D
Sbjct: 1037 IVISDLTEQKRAENELRYLANYDALTKLPNRSLMYQEIEEAIKQAESSNTHCALLFIDLD 1096

Query: 138  YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
             FK +ND+FGH VGDK++  +++++  +      +GR  G+EF         Q++     
Sbjct: 1097 KFKPVNDSFGHAVGDKLLCNITERVSNILNENAQLGRQSGDEFLVLIKNVESQDSLKETV 1156

Query: 198  DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
             L    E +   +    +I+I+ S G+A           +I  AD A+  AK++GRN   
Sbjct: 1157 MLISK-ELANKVMIEDFAINISASIGVALYPFDAITTDILIRNADVAMMQAKQNGRNGFS 1215

Query: 257  CFSDIENN 264
             FSD  N 
Sbjct: 1216 FFSDEMNE 1223


>gi|15805493|ref|NP_294189.1| sensory box/GGDEF family protein [Deinococcus radiodurans R1]
 gi|6458153|gb|AAF10046.1|AE001906_2 sensory box/GGDEF family protein [Deinococcus radiodurans R1]
          Length = 805

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 18/191 (9%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQIN 143
           EL     ++   +  D L+GL N + F   L             + +++F D+D FK IN
Sbjct: 339 ELEALSRQLQHDALHDSLTGLPNRALFSDRLSQAIARSKLPGGPQYAVLFLDVDRFKGIN 398

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKI 202
           D  GHP GD ++  ++ +L         V RLGG+EF        S ++AA +A  ++  
Sbjct: 399 DTLGHPTGDAMLVEMARRLRACLRATDTVARLGGDEFTILLEPLQSTEQAAQVAARIQDA 458

Query: 203 IENS--------QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           +                    + ++ S GI       +    ++  AD A+Y AK  GR 
Sbjct: 459 LRRPMQMPAAGPGGLPGGWHQVTMSASLGIVHSQPDYDSAMAVLRDADIAMYRAKDGGRA 518

Query: 254 RVVCFSDIENN 264
           +   F+     
Sbjct: 519 KYRVFTPEMRE 529


>gi|146292338|ref|YP_001182762.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
 gi|145564028|gb|ABP74963.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
          Length = 577

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 59/200 (29%), Positives = 100/200 (50%), Gaps = 11/200 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSL 122
            L+ ++I +  L  +  G +L    +   +  +++R+D L+G+LN  A            
Sbjct: 363 MLMFLTILVGGL--FFLGILLVVGSLQKRKFMRMARMDALTGVLNRGAGQELGENLFVQA 420

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
            +      ++ FD+D+FK+IND++GH  GD  +  + + L           R+GGEEFA 
Sbjct: 421 TARGGDFCVILFDLDFFKRINDSYGHGTGDWALKKVVESLKSQIRNGDVFARIGGEEFAI 480

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRAD 241
               ++E++   +A   R  IE      S G   +IT S G++     +  +  +++RAD
Sbjct: 481 LLPYANEEKGMEVAEQCRARIEAIDTQHS-GHHFNITASFGVSGLMADDLSLDPLLHRAD 539

Query: 242 QALYVAKKSGRNRVVCFSDI 261
            ALY AK +GRN V C+SDI
Sbjct: 540 MALYAAKSNGRNTVYCYSDI 559


>gi|115524468|ref|YP_781379.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
 gi|115518415|gb|ABJ06399.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
          Length = 666

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 69/250 (27%), Positives = 107/250 (42%), Gaps = 22/250 (8%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI----- 89
            +I  AT +    I+   +  +    +  +    L+L+++  TI     +I G I     
Sbjct: 141 IAIAFATPLLATTIYCLLLTGSTSATIMAVDAAFLALMLLRATILGERRFIDGQIKATEA 200

Query: 90  ---LKELFISYNR-------ISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDI 136
                 L  +          + +++R D L+GL N S F     S     + L+ V  DI
Sbjct: 201 IELANSLTEANREIVDSNLFLERIARTDPLTGLANRSHFQDISQSACRSGKGLAFVLIDI 260

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FK IND+ GH VGD VI  +++ L           RLGG+EF     G  +   A  L
Sbjct: 261 DNFKTINDSRGHSVGDGVIRSVANLLRSACNEHDVAVRLGGDEFVVILQGQDTSARAVTL 320

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           A  L   +    IN+ +G ++  + S GIA +   E  +  ++ RAD ALY AK  GR  
Sbjct: 321 AERLSTAMR-MPINV-AGNALFTSCSIGIAAQEDGEIDVDDLLARADVALYRAKDEGRAC 378

Query: 255 VVCFSDIENN 264
           +  F     +
Sbjct: 379 IRVFDAKMQS 388


>gi|331270164|ref|YP_004396656.1| GGDEF domain-containing protein [Clostridium botulinum BKT015925]
 gi|329126714|gb|AEB76659.1| GGDEF domain protein, putative [Clostridium botulinum BKT015925]
          Length = 1816

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 64/161 (39%), Positives = 84/161 (52%), Gaps = 11/161 (6%)

Query: 106  IDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            ID L+G          L          N+K SI+ FD+D+FK IND FGH VGDKV+  +
Sbjct: 1481 IDKLTGAYTRKYLEEKLSESIEYANFNNDKFSIIMFDLDHFKNINDTFGHQVGDKVLHSV 1540

Query: 159  SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             + ++         GR GGEEF A   G   +EA  +A  +R  IE S+I    G    I
Sbjct: 1541 CNTVMHNLRGEDICGRYGGEEFIAVLPGVDNKEALKIAERIRMAIEESKI---IGDETLI 1597

Query: 219  TISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCF 258
            TISAGIA    +  +   +I +ADQALY+AK  GRNR   +
Sbjct: 1598 TISAGIATYPCQAQLKRELIEKADQALYMAKDLGRNRCQIW 1638


>gi|269966795|ref|ZP_06180869.1| hypothetical protein VMC_22990 [Vibrio alginolyticus 40B]
 gi|269828613|gb|EEZ82873.1| hypothetical protein VMC_22990 [Vibrio alginolyticus 40B]
          Length = 325

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 12/179 (6%)

Query: 89  ILKEL--FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
           +L +L       R+  L+  D L+GL N S F   L           ++ ++++ D+D F
Sbjct: 140 VLTDLSGAKEMERLEHLAHHDALTGLANRSKFHLELEQLVQRSGYLRDEFAVLYLDLDGF 199

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND +GH  GD+V+  +S++L         + RL G+EF      ++++    +A  L
Sbjct: 200 KEVNDTYGHDAGDEVLKKVSERLTSATRHSDLIARLSGDEFVMLVNPANQKVVTRIAEQL 259

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            + I  + I    G  + + +S G+      E   + ++  AD A+Y AKK+G+ + + 
Sbjct: 260 LESI-CAPIEYK-GHLLKVGVSIGVKLVGVNERDATRVLKSADTAMYQAKKAGKGQAIL 316


>gi|302383279|ref|YP_003819102.1| diguanylate cyclase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193907|gb|ADL01479.1| diguanylate cyclase [Brevundimonas subvibrioides ATCC 15264]
          Length = 351

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 9/180 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           S   +  L     ++ + +  D L+ L N  AF   L           + +S+   DID+
Sbjct: 163 STKEVARLREHLEQVRRDAMTDALTNLANRKAFDEELLRACDEAEKKRQPMSLAVLDIDH 222

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+ ND +GH  GD+V+ +++  +  +   P    R GGEEFA      S        N 
Sbjct: 223 FKRFNDTWGHQTGDQVLRYVASVIGRISKAPRVAARYGGEEFAIIFPSESAALVEAALNQ 282

Query: 199 LRKII--ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +R+ I     +   ++     +TIS G+A+R   E  S+++ RAD+ALY +K++GRN++ 
Sbjct: 283 IREEIGSRALRRRSTNDELGAVTISGGLAQRRPGETGSSLLDRADEALYASKRAGRNKIT 342


>gi|254226957|ref|ZP_04920522.1| GGDEF family protein [Vibrio cholerae V51]
 gi|125620525|gb|EAZ48894.1| GGDEF family protein [Vibrio cholerae V51]
          Length = 469

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/214 (26%), Positives = 105/214 (49%), Gaps = 4/214 (1%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            I   ++ +   Y    + +    L++  +  +L L        ++L  +  ++S L++ 
Sbjct: 253 RILSRWVHIETIYPRYLMPILASGLLLSIVIYTLQLRRTVRLRTQQLEEANQKLSYLAKT 312

Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ + N  +F   L +   +   L+++ FDID FK IND FGH  GD  I F+   + 
Sbjct: 313 DSLTDIANRRSFFEYLEAEQTRSGSLTLMVFDIDDFKTINDRFGHGAGDNAICFVVGCVR 372

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
               +  +  R+GGEEFA  A G + +E+  LA  + + +   +  +++  S+ +TIS G
Sbjct: 373 QALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKKWVVNAQHSLSLTISLG 432

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            A         ++ + AD  +Y  K++G+N+VV 
Sbjct: 433 CAFYLRPARPFSL-HDADSLMYEGKRNGKNQVVF 465


>gi|119945689|ref|YP_943369.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
 gi|119864293|gb|ABM03770.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
          Length = 724

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 88/184 (47%), Gaps = 12/184 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           +L  + + +   +  D L+GL N       +          ++ +++ F D+D FK +ND
Sbjct: 276 DLANANSALKLSAHYDPLTGLPNRILLADRIQQAVAKSLRNDKYVAVAFIDLDGFKAVND 335

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
           + GH +GD+++  ++ +L  V      + R GG+EF A     S  +E+ ++   + + +
Sbjct: 336 SHGHTIGDELLKKVAKRLKHVLREGDTLSRFGGDEFVAVIDNLSDPRESDLIVLRMLESV 395

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            ++   +     + I+ S G+            ++  ADQA+Y+AK+ G+NR   F DIE
Sbjct: 396 SSTL--VVEKKLLKISASIGVTFYPLDSAGPEQLLRHADQAMYMAKQQGKNRSYVF-DIE 452

Query: 263 NNTC 266
            +  
Sbjct: 453 QDVA 456


>gi|83593846|ref|YP_427598.1| diguanylate cyclase [Rhodospirillum rubrum ATCC 11170]
 gi|83576760|gb|ABC23311.1| Putative diguanylate cyclase (GGDEF domain) [Rhodospirillum rubrum
           ATCC 11170]
          Length = 686

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 54/193 (27%), Positives = 96/193 (49%), Gaps = 9/193 (4%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISS 121
           LS  +I +  S  + + S + + +       +  L+  D L+GL N         +    
Sbjct: 480 LSAAVIDLDRSPAV-FASFNDISQTKALERELRALAERDSLTGLANRLRVMDALRSEFDR 538

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
           +  Y   LS++  D+D FK +ND  GH  GD+ +   +   +    T   +GR GGEEF 
Sbjct: 539 VTRYGGALSVMMLDLDRFKVLNDRHGHVCGDEALRHFAASALATLRTNDLLGRSGGEEFI 598

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
               G++   A ++   LR  +++  ++   G S+ +++S G+A R   +   +++ RAD
Sbjct: 599 VLLPGAALGAAKLIGERLRAAVQDKPLSW-QGRSVALSVSIGLASRQIGDTPDSLLGRAD 657

Query: 242 QALYVAKKSGRNR 254
           QAL++AK +GRNR
Sbjct: 658 QALHLAKANGRNR 670


>gi|330720794|gb|EGG99007.1| diguanylate cyclase [gamma proteobacterium IMCC2047]
          Length = 633

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 60/185 (32%), Positives = 84/185 (45%), Gaps = 14/185 (7%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVF 133
           LLG I+            ++ +   ID L+G+   S F+                L  V 
Sbjct: 451 LLGEIAAR-----RQLEEKLREQINIDSLTGVYGRSYFLQLGNLEFKRSQREGVSLFAVM 505

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID FK IND +GH  GD V+   +             GRLGGEEFA    G  E EA 
Sbjct: 506 IDIDLFKNINDTYGHSAGDAVLKRFALVCQECLREIDIFGRLGGEEFALVVAGVDESEAY 565

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGR 252
            + + +R  +E +++    G  I +T S G A     +  +  I+ RAD+ALY AK+ GR
Sbjct: 566 EICDRIRVSLEKTEVVTGEGV-IKLTASFGCAALEEGDEGLDAILSRADKALYEAKEKGR 624

Query: 253 NRVVC 257
           N+VV 
Sbjct: 625 NQVVM 629


>gi|269960938|ref|ZP_06175308.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834378|gb|EEZ88467.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 626

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 65/214 (30%), Positives = 96/214 (44%), Gaps = 22/214 (10%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           L ++    + +  I      +  YI+  + + E      ++  LS  D L+ L N   F 
Sbjct: 421 LNHVFTAIMRIQAIMAKSGKVSYYITSLVDISERKELEEKLRNLSEKDGLTSLWNRRKFE 480

Query: 120 SSLGSYNEKL---------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
             L  Y   +          +  FDID+FK+IND  GH  GDKVI  +++ L        
Sbjct: 481 EQLAQYANMVERYPDTPTTCLALFDIDHFKRINDEMGHDEGDKVICGVANTLSNGVRNTD 540

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
           FV R+GGEEFA     ++ QEA ++ N LR  +E +           +T+S G ++    
Sbjct: 541 FVARVGGEEFAVIMPHTTTQEAEVVLNRLRVAVELNS-------EKAVTVSVGYSDLTGD 593

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVC---FSDI 261
              S     AD ALY +K +GRNRV     F DI
Sbjct: 594 RTRS--YKCADIALYESKSAGRNRVSICHSFDDI 625


>gi|226942112|ref|YP_002797186.1| hypothetical protein LHK_03199 [Laribacter hongkongensis HLHK9]
 gi|226717039|gb|ACO76177.1| GGDEF domain protein [Laribacter hongkongensis HLHK9]
          Length = 183

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 8/172 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQIND 144
           +   +  + Q S  D L+GL N       L           ++  ++V  DID+FK IND
Sbjct: 1   MRNLHEELRQQSTHDALTGLYNRRFMHKRLLEEAAKLDRHPDQPFAVVLADIDHFKSIND 60

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH +GD V+  +S + +          R GGEEF      ++  +A  +   LR ++ 
Sbjct: 61  TLGHDMGDTVLTEVSRRFLSHLRQYDVCARWGGEEFLLLLPSTTADQAFRVCEHLRHVMA 120

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++  +   G    +++S G +       ++  +  AD+ LY AK +GRN V 
Sbjct: 121 DTLYHTPEGQPFALSMSFGYSACHVAADLNRALQMADRGLYDAKDAGRNCVR 172


>gi|217972536|ref|YP_002357287.1| diguanylate cyclase [Shewanella baltica OS223]
 gi|217497671|gb|ACK45864.1| diguanylate cyclase [Shewanella baltica OS223]
          Length = 584

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 109/244 (44%), Gaps = 26/244 (10%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGL-----EYILVENLSLVIIS---------ITISLL 81
           + FI  +     ++ F+I LT ++ +     + ++    ++  I+         +T +L 
Sbjct: 330 TAFIILIFCSGILYCFFIWLTSWHFITKGIIKPVMATRDAMNAIANEKLDTHMPVTDNLE 389

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFF 134
           L  +  S+   L     ++  ++  D L+G  N                 +N  L I+ F
Sbjct: 390 LQQMVNSLET-LKSYAAQVKGMAETDGLTGCYNRRYLDIQLQKELEYARDHNMPLGIILF 448

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           DID FKQ ND +GH  GD+ +  + +    +       + R GGEEF      S  +E  
Sbjct: 449 DIDNFKQFNDRYGHVAGDQCLKNIVNAAKSILKRPTDMLARYGGEEFMIVLPSSPLEEVY 508

Query: 194 ILANDLRKIIENSQINISSGPSIHI-TISAGIA--ERCHKEPISTIIYRADQALYVAKKS 250
             A  LR+ I + +I     P   I TISAGI   +   +   +++I RAD+ALY AK +
Sbjct: 509 QFAERLREKIISLEIPHEDSPHAGILTISAGITCWQLPQQLDANSLINRADEALYHAKLT 568

Query: 251 GRNR 254
           GRNR
Sbjct: 569 GRNR 572


>gi|254456809|ref|ZP_05070237.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207085601|gb|EDZ62885.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 671

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 13/199 (6%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNE 127
           +I      +L  ++     KE    Y  +   +  D L+GL N  A+I  +         
Sbjct: 219 IIFWFVGMILFRFVYN---KERKARYE-LEYFANHDSLTGLPNRHAYIDKITSMVNKNKN 274

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
             +++F D+D FK IND+ GH +GD ++  ++ +L         + R GG+EF       
Sbjct: 275 NFALIFMDLDNFKTINDSLGHTLGDMLLQKVAKRLKNEIKEYDMLSRFGGDEFVFLFSNV 334

Query: 188 -SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245
            SE         + ++++  +  I +   ++ T S GIA      +    ++  AD A+Y
Sbjct: 335 QSELTIEKTMIKIHEVLK--KPFILNTYEVYTTASIGIAIYPDDAQDAELLLRNADVAMY 392

Query: 246 VAKKSGRNRVVCFS-DIEN 263
            AK+SGR++   F+ D+ N
Sbjct: 393 DAKQSGRSKYSFFNADMLN 411


>gi|149911271|ref|ZP_01899893.1| GGDEF domain protein [Moritella sp. PE36]
 gi|149805656|gb|EDM65656.1| GGDEF domain protein [Moritella sp. PE36]
          Length = 727

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 60/193 (31%), Positives = 94/193 (48%), Gaps = 17/193 (8%)

Query: 80  LLLGYISGSILKE-------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------- 125
           LL   +S +I+K             ++  +L+  D L+G LN   F   L          
Sbjct: 533 LLQADMSKNIIKRQQQSLLDRRKERDKYRELASRDTLTGALNRRKFNLILKQEIGFAKQD 592

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            +KLS++  DID+FK IND +GH  GD+V+    D       +   V R+GGEEFA    
Sbjct: 593 KQKLSLLLLDIDHFKNINDAYGHGGGDQVLRDFYDACFNSVKSSDIVARIGGEEFAILMP 652

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQA 243
            ++  +A I+A  LR  +   Q+      +I +T+S G+A+    + ++    I   D+A
Sbjct: 653 ETNSTQAHIIAERLRHNVSKLQVPYGQD-NIRLTVSIGLAQWQEYDSLNAKEFIAHTDKA 711

Query: 244 LYVAKKSGRNRVV 256
           LY AK +GRN V+
Sbjct: 712 LYQAKDNGRNCVI 724


>gi|189424367|ref|YP_001951544.1| diguanylate cyclase [Geobacter lovleyi SZ]
 gi|189420626|gb|ACD95024.1| diguanylate cyclase [Geobacter lovleyi SZ]
          Length = 237

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 82/178 (46%), Gaps = 8/178 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139
             +  +L      +   +RID ++GL N  A +            +    SI+  D+DYF
Sbjct: 59  AQLQTQLVNMNRSLDLATRIDPMTGLANRRAIMEMIEQEFSRAHRHQRPASIIMADLDYF 118

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND  G   GD V+  +S  L           R GGEEF      +    A  +AN +
Sbjct: 119 KKVNDTHGFNTGDDVLVEVSRVLRGCLRNEDICSRWGGEEFLVLLPETQLDGALAVANKI 178

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R+ +  ++  + + P I +TIS G+ E    + I   I RADQAL+ AK  GRNR + 
Sbjct: 179 RESVAMTEFKV-NRPGIQLTISLGVCEYKPDQNIFEAISRADQALFQAKLGGRNRAIV 235


>gi|285018862|ref|YP_003376573.1| two-component system response regulator protein [Xanthomonas
           albilineans GPE PC73]
 gi|283474080|emb|CBA16581.1| putative two-component system response regulator protein
           [Xanthomonas albilineans]
          Length = 460

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 9/164 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+GL N   F+              + +S+   D+D+FK +ND  GH  GD
Sbjct: 270 LQDLATRDFLTGLPNRRHFLEQSQRVLPQCLTDQQSVSVAMLDLDHFKHVNDTLGHDAGD 329

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  ++  L         + R GGEEF     G  E         LR  I   Q+N+  
Sbjct: 330 EALRAVASVLTAYARPQDLIARFGGEEFCMLVPGLDEAATTDYFEKLRARIAELQVNVGE 389

Query: 213 GPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             ++ +TIS G+ + +   + +   +  AD+ LY+AK +GRNRV
Sbjct: 390 -KTLRLTISIGVCSSQIQNQALHPFLIEADKYLYLAKAAGRNRV 432


>gi|47568074|ref|ZP_00238779.1| sensory box protein [Bacillus cereus G9241]
 gi|47555228|gb|EAL13574.1| sensory box protein [Bacillus cereus G9241]
          Length = 562

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 88/173 (50%), Gaps = 6/173 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQA-- 250

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+
Sbjct: 251 PFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFT 303


>gi|330446221|ref|ZP_08309873.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490412|dbj|GAA04370.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 984

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 16/181 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------------NEKLSIVFFDIDYF 139
              +   +   +  D L+ L+N   F   +                N++ S++F D+D F
Sbjct: 536 RQQTEKELLFYANNDALTTLMNRRCFTERVEQEINSVCEQVKKGGCNQEFSVLFIDLDDF 595

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND +GH VGDK++  +++ L+        V R GG+EFA    G S   A   A  L
Sbjct: 596 KSINDLYGHDVGDKLLKHIAEILLDFCSKETLVCRYGGDEFAILLKGKSSAFAKQYAQKL 655

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + +  S   +      ++TIS GI+           ++  AD A+Y  K++GRN +  +
Sbjct: 656 MRAL--SVPILIDALQFNVTISIGISTYPESGVTHQALLKNADYAMYEQKRNGRNGISIY 713

Query: 259 S 259
            
Sbjct: 714 D 714


>gi|326537956|gb|ADZ86171.1| diguanylate cyclase GGDEF domain-containing protein [Brucella
           melitensis M5-90]
          Length = 691

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFF 134
           L+G +    + E      R+  ++  D L+GL N + F   +GS  +        ++ + 
Sbjct: 237 LIGLV--EDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHVGSLLKKGSDCDPFALFYL 294

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK +ND+  H  GD+++  ++ +L  +     F+ RLGG+EFA      +  + A+
Sbjct: 295 DIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGTLAQIAM 354

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
            A+ +    ++    +  G +  +T S GIA+   H +    ++  AD ALY +K  GR 
Sbjct: 355 FADRVLSAFQD--PFVLGGNAEFVTCSMGIAQAPLHGDNPDVLMRNADLALYASKSGGRR 412

Query: 254 RVVCFSD 260
               + D
Sbjct: 413 TFRFYQD 419


>gi|242239488|ref|YP_002987669.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Dickeya dadantii Ech703]
 gi|242131545|gb|ACS85847.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Dickeya dadantii Ech703]
          Length = 718

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 7/177 (3%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQIND 144
             + +      R+   +  D L+GL N +   S+L    +    ++++  D+D FK IND
Sbjct: 280 RDVTDRKRYEERLFLQAHRDPLTGLANRTLLASTLDHVLKSDLAVAVLIIDLDGFKDIND 339

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
           + GH  GD+++  ++ +L         V R+GG+EFA    G ++E+  A LA  +   I
Sbjct: 340 SLGHSSGDEILTSVAKRLQANARPEDLVARMGGDEFAMLLPGLNTEELVADLAERIINDI 399

Query: 204 ENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             SQ        I+I+ S GI     H      ++  AD ALY A+  GRN    F+
Sbjct: 400 --SQAVQIDNQQINISASIGIVMSPSHGMTSQDLLTSADLALYKAQSDGRNCYRFFT 454


>gi|237802331|ref|ZP_04590792.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331025188|gb|EGI05244.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 897

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + +  ++  RI +L+  D L+ L N  AFI +L        +  +S++  DID FK+IN
Sbjct: 454 DITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDERFARDTDTPMSLLLVDIDNFKRIN 513

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++  L+ +L         + R    EFA     + ++    +A+ +   +
Sbjct: 514 DSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLLDDTDQEAGQAIASQVLATL 573

Query: 204 ENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I +T S G+A    H     T++  A  AL+ AK +G+++V  F++  
Sbjct: 574 DKPMF--VDNQLISVTGSVGLACAPIHGRDPQTLMKNAGLALHKAKANGKHQVQVFTEAL 631

Query: 263 NNTC 266
           N   
Sbjct: 632 NAEA 635


>gi|94270793|ref|ZP_01291826.1| GGDEF [delta proteobacterium MLMS-1]
 gi|93450662|gb|EAT01760.1| GGDEF [delta proteobacterium MLMS-1]
          Length = 291

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 105 RIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
             D L+GL N      S            + ++++  D+D+FK++ND +GH  GD+++  
Sbjct: 1   MHDELTGLYNRRYLQDSGRRELHKAERARQPVALLLLDLDHFKEVNDFWGHSRGDQILRE 60

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           L+  L           R GGEEF      ++  EA  LA+ LR+++E   +         
Sbjct: 61  LAGLLRCNLRQSDVPARYGGEEFVVLLPDTASGEAGQLADKLRRLVEEQLVLEEGEERRL 120

Query: 218 ITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
           +T + G+A      + +  ++  AD+ LY  K +GRN+VV
Sbjct: 121 VTATIGVAAYPADGDKLEELLAVADRRLYAGKTAGRNQVV 160


>gi|23501126|ref|NP_697253.1| sensory box protein [Brucella suis 1330]
 gi|161618200|ref|YP_001592087.1| diguanylate cyclase [Brucella canis ATCC 23365]
 gi|254705393|ref|ZP_05167221.1| diguanylate cyclase [Brucella suis bv. 3 str. 686]
 gi|260567150|ref|ZP_05837620.1| PAS-associated domain-containing protein [Brucella suis bv. 4 str.
           40]
 gi|23346999|gb|AAN29168.1| sensory box/GGDEF domain/EAL domain protein [Brucella suis 1330]
 gi|161335011|gb|ABX61316.1| diguanylate cyclase (GGDEF) domain [Brucella canis ATCC 23365]
 gi|260156668|gb|EEW91748.1| PAS-associated domain-containing protein [Brucella suis bv. 4 str.
           40]
          Length = 703

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 91/187 (48%), Gaps = 11/187 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFF 134
           L+G++    + E      R+  ++  D L+GL N + F   +GS  +        ++ + 
Sbjct: 249 LIGFV--EDITERREIEKRMVHIAMHDSLTGLPNRAYFPHHVGSLLKKGSDCDPFALFYL 306

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK +ND+  H  GD+++  ++ +L  +     F+ RLGG+EFA      +  + A+
Sbjct: 307 DIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGTLAQIAM 366

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
            A+ +    ++    +  G +  +T S GIA+   H +    ++  AD ALY +K  GR 
Sbjct: 367 FADRVLSAFQD--PFVLGGNAEFVTCSMGIAQAPLHGDNPDVLMRNADLALYASKSGGRR 424

Query: 254 RVVCFSD 260
               + D
Sbjct: 425 TFRFYQD 431


>gi|15807483|ref|NP_296218.1| GGDEF family protein [Deinococcus radiodurans R1]
 gi|6460320|gb|AAF12040.1|AE002079_5 GGDEF family protein [Deinococcus radiodurans R1]
          Length = 356

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 62/182 (34%), Positives = 92/182 (50%), Gaps = 14/182 (7%)

Query: 84  YISGSILKELFISYNRISQL--SRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFF 134
            I+G I + L I      +L  +R+D L+G+   +A  S L          N  LS++  
Sbjct: 180 LIAGFIERYLSIHEQTSGELQAARLDALTGVAGRAALESELQRALDTARRTNSPLSVILA 239

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FKQ+ND  GH  GD V+   + +L    G    VGR GGEEF A   G +  +A  
Sbjct: 240 DIDHFKQVNDVHGHGAGDDVLRAFAKRLRRNVGGAGMVGRWGGEEFMAVLPGVARDDALA 299

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           LA  LR+ + +++I       + +T S G+A     + ++ +  RAD+ LY AK  GRN 
Sbjct: 300 LAERLRQAVSDTEI-----AGLPVTASFGVAALRPDDDLNQLFSRADERLYDAKNGGRNT 354

Query: 255 VV 256
           V 
Sbjct: 355 VR 356


>gi|114330543|ref|YP_746765.1| diguanylate cyclase/phosphodiesterase [Nitrosomonas eutropha C91]
 gi|114307557|gb|ABI58800.1| diguanylate cyclase/phosphodiesterase [Nitrosomonas eutropha C91]
          Length = 706

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 11/181 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFG 147
              ++I +++  D L+ L N    I  +    E         +I+F D+D FK IND+ G
Sbjct: 250 RLNDQIVRMATFDALTDLPNRWTLIERMERAIEISRRDGNMFAILFMDLDGFKIINDSLG 309

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENS 206
           H  GD+V+   + +L+        V RLGG+EF A      +  +A+ +A+ +   +   
Sbjct: 310 HSTGDEVLKAFALRLLHCVRGSDTVARLGGDEFVALLENIATTDDASEMADSILSRMRQG 369

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
               ++   + +  S GI       + +  ++  AD A+Y AK+ GR+    F    N  
Sbjct: 370 L--WANNQPLQVMPSIGITLFPQDGDTVEKLLKNADAAMYEAKRGGRSTYRFFETSMNEA 427

Query: 266 C 266
            
Sbjct: 428 A 428


>gi|332701348|ref|ZP_08421436.1| diguanylate cyclase [Desulfovibrio africanus str. Walvis Bay]
 gi|332551497|gb|EGJ48541.1| diguanylate cyclase [Desulfovibrio africanus str. Walvis Bay]
          Length = 286

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 101/202 (50%), Gaps = 17/202 (8%)

Query: 69  LSLVIISITISL-LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           ++ +++   +S  L G+ +G          + ++QLS +D L+G  N   F  +L     
Sbjct: 73  MAYMLLGTMLSFGLFGWYAGR-------KEDHLAQLSVMDHLTGTYNTRFFHRALEREFA 125

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               Y+  +S+V  D+D+FK IND +GH  GD V++ +++ +         V R+GGEEF
Sbjct: 126 NYTRYSLPMSLVLLDLDHFKLINDTYGHQSGDVVLSEVAEIICSTVRQGDTVARVGGEEF 185

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIY 238
           A    G++   A  ++  +R+ I++   +   G +  +  S G+A  +R      +    
Sbjct: 186 AVIMPGTATDNALAVSERIREAIKSRPAHSLDGTTFTVRASLGVAGTDRICPRSATEFFA 245

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
           R D+ALY AK+ GR+R V   +
Sbjct: 246 RVDRALYNAKEQGRDRSVVAEE 267


>gi|323160592|gb|EFZ46533.1| diguanylate cyclase domain protein [Escherichia coli E128010]
 gi|323170144|gb|EFZ55799.1| diguanylate cyclase domain protein [Escherichia coli LT-68]
          Length = 458

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 279 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 336

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 337 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 396

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 397 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 454


>gi|228983830|ref|ZP_04144025.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228775879|gb|EEM24250.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 568

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 88/173 (50%), Gaps = 6/173 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQA-- 250

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+
Sbjct: 251 PFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFT 303


>gi|193064262|ref|ZP_03045345.1| diguanylate cyclase [Escherichia coli E22]
 gi|194426074|ref|ZP_03058630.1| diguanylate cyclase [Escherichia coli B171]
 gi|209918771|ref|YP_002292855.1| hypothetical protein ECSE_1580 [Escherichia coli SE11]
 gi|218554022|ref|YP_002386935.1| putative diguanylate cyclase [Escherichia coli IAI1]
 gi|218695027|ref|YP_002402694.1| putative diguanylate cyclase YddV [Escherichia coli 55989]
 gi|293445892|ref|ZP_06662314.1| diguanylate cyclase yddV [Escherichia coli B088]
 gi|300824488|ref|ZP_07104600.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
 gi|331667885|ref|ZP_08368742.1| diguanylate cyclase YddV (DGC) [Escherichia coli TA271]
 gi|331677370|ref|ZP_08378045.1| diguanylate cyclase YddV (DGC) [Escherichia coli H591]
 gi|192929110|gb|EDV82721.1| diguanylate cyclase [Escherichia coli E22]
 gi|194416129|gb|EDX32395.1| diguanylate cyclase [Escherichia coli B171]
 gi|209912030|dbj|BAG77104.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218351759|emb|CAU97475.1| putative diguanylate cyclase YddV [Escherichia coli 55989]
 gi|218360790|emb|CAQ98357.1| putative diguanylate cyclase YddV [Escherichia coli IAI1]
 gi|291322722|gb|EFE62150.1| diguanylate cyclase yddV [Escherichia coli B088]
 gi|300523043|gb|EFK44112.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
 gi|323947806|gb|EGB43803.1| GGDEF domain-containing protein [Escherichia coli H120]
 gi|324021084|gb|EGB90303.1| diguanylate cyclase domain protein [Escherichia coli MS 117-3]
 gi|331064849|gb|EGI36751.1| diguanylate cyclase YddV (DGC) [Escherichia coli TA271]
 gi|331073830|gb|EGI45150.1| diguanylate cyclase YddV (DGC) [Escherichia coli H591]
          Length = 460

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 281 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 339 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 399 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 456


>gi|157374772|ref|YP_001473372.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella sediminis HAW-EB3]
 gi|157317146|gb|ABV36244.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella sediminis HAW-EB3]
          Length = 1447

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 7/184 (3%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQIND 144
            S +         + +L+  D L+ L N S+ + +LG     +   +++  D+D FK+IND
Sbjct: 996  SDISRRKQQEEELRKLTNNDLLTNLPNRSSLMVTLGNLVKRDSHHTLMVLDLDNFKKIND 1055

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
            + GH VGD+++  ++ ++         + RLGG+EFA     +     +A++AN +    
Sbjct: 1056 SLGHQVGDELLIKVAKRIEDTVPFHTSIYRLGGDEFAILVDNNPDIGSSAVIANKVIDAF 1115

Query: 204  ENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDIE 262
              S   ++S   + + +S GI      +     ++ +AD A+Y AK  G NR   +S+  
Sbjct: 1116 -VSPFELTSDKVV-VGLSIGIVLYPEDDQNEQALLRKADIAMYHAKSGGGNRYQFYSESL 1173

Query: 263  NNTC 266
            N   
Sbjct: 1174 NRNA 1177


>gi|78777767|ref|YP_394082.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78498307|gb|ABB44847.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM
           1251]
          Length = 516

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 8/178 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDID 137
           I    ++ L     R  + S+ D L+ L N  A              Y +  ++VFFD+D
Sbjct: 337 ILSKKIEHLEQELARAREESKEDFLTKLFNKRALEEFMNIKEAEFERYEKNFTVVFFDLD 396

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK +ND +GH  GD V+   S  L         VGR GGEEF A    +      + A 
Sbjct: 397 HFKAVNDTYGHDAGDAVLVAFSKILKKDARNVDIVGRYGGEEFVAILSETDTDGGIVFAQ 456

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +R  ++N++    S   I +++SAG++ER     + + +  AD+ALY AK +GR+RV
Sbjct: 457 KIRNKVKNARFMYKSN-RIELSVSAGVSERKIHASLQSTMKAADEALYKAKDNGRDRV 513


>gi|120599667|ref|YP_964241.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|120559760|gb|ABM25687.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|319425640|gb|ADV53714.1| diguanylate cyclase [Shewanella putrefaciens 200]
          Length = 577

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 59/200 (29%), Positives = 100/200 (50%), Gaps = 11/200 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSL 122
            L+ ++I +  L  +  G +L    +   +  +++R+D L+G+LN  A            
Sbjct: 363 MLMFLTILVGGL--FFLGILLVVGSLQKRKFMRMARMDALTGVLNRGAGQELGENLFVQA 420

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
            +      ++ FD+D+FK+IND++GH  GD  +  + + L           R+GGEEFA 
Sbjct: 421 TARGGDFCVILFDLDFFKRINDSYGHGTGDWALKKVVESLKSQIRNGDVFARIGGEEFAI 480

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRAD 241
               ++E++   +A   R  IE      S G   +IT S G++     +  +  +++RAD
Sbjct: 481 LLPYANEEKGMEVAEQCRARIEAIDTQHS-GHHFNITASFGVSGLMADDLSLDPLLHRAD 539

Query: 242 QALYVAKKSGRNRVVCFSDI 261
            ALY AK +GRN V C+SDI
Sbjct: 540 MALYAAKSNGRNTVYCYSDI 559


>gi|320642549|gb|EFX11797.1| RNase II stability modulator [Escherichia coli O157:H- str. 493-89]
 gi|320647902|gb|EFX16610.1| RNase II stability modulator [Escherichia coli O157:H- str. H 2687]
          Length = 597

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 155 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 214

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 215 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 273

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 274 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 331

Query: 259 SDIENN 264
           +   N 
Sbjct: 332 TPEMNQ 337


>gi|34496419|ref|NP_900634.1| hypothetical protein CV_0964 [Chromobacterium violaceum ATCC 12472]
 gi|34102272|gb|AAQ58638.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 528

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 10/175 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L ++      + + +  D L+ L N      +            + +++   D+D FK+I
Sbjct: 351 LAQIEALQAALREQTLRDPLTHLFNRRYLDETFERERERAEREGKPIAVAMLDLDDFKRI 410

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH +GD+V+  L+  L         V RLGGEEF     GS  ++A     + R+ 
Sbjct: 411 NDRHGHQIGDRVLQALAGLLRERSRAADIVCRLGGEEFMVVLPGSDAEQAQHRVEEWRRA 470

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
               Q+  +       + S GIA    +   +  +  RADQALY AK +G+N  V
Sbjct: 471 F--HQMEHAGEHPFRASFSCGIAALPGNGRVLDELYRRADQALYQAKAAGKNCSV 523


>gi|109899970|ref|YP_663225.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109702251|gb|ABG42171.1| response regulator receiver modulated diguanylate cyclase
           [Pseudoalteromonas atlantica T6c]
          Length = 300

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 9/173 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L    + + +++  D L+ + N   F   L              +++ FDID+FK  ND+
Sbjct: 126 LKELTDELRRMAYQDGLTQVSNRRYFDEYLLRQQKLSQRSGSFFALLMFDIDFFKYYNDH 185

Query: 146 FGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD  +  ++  L   V     FV R GGEEFA     +    A ++A  L   + 
Sbjct: 186 YGHLAGDDCLRLVAKVLKQSVERPGDFVARFGGEEFAVVLPETGIAGAILVATKLLTSVR 245

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
              I     P   +T S GIA      + +  +I  AD+ LY+AK +GR++  
Sbjct: 246 ELGIKHKGSPFGVVTGSIGIAASDGGKKTLQELIDTADRRLYLAKTNGRDQFA 298


>gi|327194235|gb|EGE61099.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 309

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 12/206 (5%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           +  +   + +N  ++ I+  I+ L     G  +++     ++  + S  D L+G+ N   
Sbjct: 109 WLWMTEAVQQNGWMLCIASDITRLRA--QGRTVRQ---DRDQAIKASYTDELTGVANRRF 163

Query: 118 FISS------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
            ++                +  FDID FKQIND FGH  GD V+   + ++         
Sbjct: 164 VMARVDDMLAAARTGGSGCLAVFDIDKFKQINDRFGHHAGDLVLRDFAHRIHQNVRRNDC 223

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
            GR+GGEEF      +S ++A  +   +  +I  S+  ++  P    T SAGIA     +
Sbjct: 224 FGRVGGEEFLLVMPSTSPEDALAMVERMLTVIRFSR-PLADSPDFSYTCSAGIAASLPSD 282

Query: 232 PISTIIYRADQALYVAKKSGRNRVVC 257
             S +  RADQALY AK SGR+RV  
Sbjct: 283 SASELYRRADQALYDAKMSGRDRVRA 308


>gi|323497953|ref|ZP_08102962.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
 gi|323316998|gb|EGA70000.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
          Length = 489

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 76/253 (30%), Positives = 112/253 (44%), Gaps = 20/253 (7%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL----------VIIS 75
            F+ +  +   +  A  +F+ N+ + +I + P     Y L ++LS             IS
Sbjct: 238 PFITWKELSALLAFACFMFVFNLSVVHIMVKPITRARYAL-DSLSKGQSSQLTDQDTFIS 296

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSI 131
             +   +  I   I  +L +    +  L+  D L+ + N  +        L       S+
Sbjct: 297 YEMRDFVNRI-NEIFNQLELKQKELEWLALHDALTTVGNRRSLQQHWSRLLEGQPRCTSV 355

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQ 190
           V  DID+FK  NDN+GH  GDKV+  ++  L         FV R GGEEF       S  
Sbjct: 356 VLIDIDFFKPFNDNYGHIEGDKVLQIVAKTLQHCDSDCDKFVARFGGEEFCVILSSDSPI 415

Query: 191 EAAILANDLRKIIENSQINISSGP-SIHITISAGIAE--RCHKEPISTIIYRADQALYVA 247
           ++   AN LR  IE  QI     P S ++TISAG+ E      + +   I  AD ALY A
Sbjct: 416 DSIEEANQLRVAIEQLQIAHEFSPISSYLTISAGVVECRLTSSDKLQDKIRLADAALYAA 475

Query: 248 KKSGRNRVVCFSD 260
           K+ GRNR+V   D
Sbjct: 476 KQQGRNRLVVHVD 488


>gi|261756108|ref|ZP_05999817.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella suis bv. 3 str. 686]
 gi|261745861|gb|EEY33787.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella suis bv. 3 str. 686]
          Length = 709

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 91/187 (48%), Gaps = 11/187 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFF 134
           L+G++    + E      R+  ++  D L+GL N + F   +GS  +        ++ + 
Sbjct: 255 LIGFV--EDITERREIEKRMVHIAMHDSLTGLPNRAYFPHHVGSLLKKGSDCDPFALFYL 312

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK +ND+  H  GD+++  ++ +L  +     F+ RLGG+EFA      +  + A+
Sbjct: 313 DIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGTLAQIAM 372

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
            A+ +    ++    +  G +  +T S GIA+   H +    ++  AD ALY +K  GR 
Sbjct: 373 FADRVLSAFQD--PFVLGGNAEFVTCSMGIAQAPLHGDNPDVLMRNADLALYASKSGGRR 430

Query: 254 RVVCFSD 260
               + D
Sbjct: 431 TFRFYQD 437


>gi|222109246|ref|YP_002551510.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Acidovorax ebreus TPSY]
 gi|221728690|gb|ACM31510.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Acidovorax ebreus TPSY]
          Length = 1225

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 16/185 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDN 145
                  I +L+  D L+ L N    +              +  +++F D+D FK +ND 
Sbjct: 775 RKHQEREIQRLAFFDPLTHLPNRVQLLDRVDQALAKAQRLEQGGALLFIDLDNFKTLNDT 834

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL------GSSEQEAAILANDL 199
            GH  GD+++  ++ +L     +   V RLGG+EF            +  ++A  +   +
Sbjct: 835 LGHDQGDELLQIVAQRLNTCVRSADTVARLGGDEFVVLVEQLSAHSDTLAEQAGAVGEKI 894

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             ++  S     +G     T S GIA   H    +  ++ +AD A+Y AK +GRN +  F
Sbjct: 895 LAVL--SAPYALTGYQYRSTPSIGIALFNHAPTTVGELLKQADLAMYQAKTAGRNTLRFF 952

Query: 259 SDIEN 263
           +    
Sbjct: 953 NPSMQ 957


>gi|182435794|ref|YP_001823513.1| putative integral membrane phosphodiesterase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178464310|dbj|BAG18830.1| putative integral membrane phosphodiesterase [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 940

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 16/194 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEK-----LSIVFFDI 136
            ++   + E      ++   +  D L+ L N + F + +       +      +++F D+
Sbjct: 456 LLNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTARVRQALGGRRSGDPGTAVLFIDL 515

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-------E 189
           D FK +ND  GH  GD+++     +L           RLGG+EFAA  +G         E
Sbjct: 516 DGFKAVNDTIGHQAGDELLIQAGRRLQDSVRAGDTAARLGGDEFAALIVGDGTRDQGARE 575

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            +   +A+ LR  +  SQ        + +  S G+A        + ++  AD A+Y AK 
Sbjct: 576 YQVHEIADRLRLTL--SQPYRIGPSEVRVAASIGVAFAEPAISPTDLMRNADLAMYRAKA 633

Query: 250 SGRNRVVCFSDIEN 263
            G++RV  ++    
Sbjct: 634 GGKDRVELYAPQMQ 647


>gi|134103559|ref|YP_001109220.1| diguanylate cyclase/phosphodiesterase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291008080|ref|ZP_06566053.1| diguanylate cyclase/phosphodiesterase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133916182|emb|CAM06295.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Saccharopolyspora erythraea NRRL
           2338]
          Length = 687

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 91/187 (48%), Gaps = 13/187 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQI 142
            + +  +   R+   +  D L+GL N + F+  LG         E++++ + D+D FK I
Sbjct: 240 DVTDRRLLQERLRHQAMHDPLTGLPNRALFLEKLGVALENHGPGERVALCYMDLDGFKVI 299

Query: 143 NDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND-L 199
           ND+ GH VGD ++  +S++L     G    V R+GG+EF      S   ++A  +A+  L
Sbjct: 300 NDSLGHHVGDDLLIAVSERLALSARGENRLVARMGGDEFVILVQDSPGTEQAIEVADRVL 359

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             ++E  +I    G  + ++ S GI ER    +  + ++  AD  LY AK  G+ +   F
Sbjct: 360 DALVEPVRI---GGHELSVSASIGIVERPVRGQTAAELMRDADVTLYWAKAEGKGQWALF 416

Query: 259 SDIENNT 265
               N T
Sbjct: 417 DPDRNAT 423


>gi|323187519|gb|EFZ72828.1| protein gmr [Escherichia coli RN587/1]
          Length = 661

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     LA+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEALASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|308048339|ref|YP_003911905.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
 gi|307630529|gb|ADN74831.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
          Length = 409

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 84/175 (48%), Gaps = 22/175 (12%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            Q++ +D L+G+    A   +L     + S+   DID+FK+ ND +GH VGD+V+  ++ 
Sbjct: 232 HQMAFLDELTGIPGRRALNMALKRVGRRYSLAMMDIDHFKKFNDTYGHDVGDEVLKLVAS 291

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS----- 215
           +L  V G    V R GGEEF     G + +  A     +R+ I +    +    S     
Sbjct: 292 RLTRVKGGG-QVFRYGGEEFTVLFPGKAPKACAAHLEAIREDIADYPFVVRKSKSRPDDE 350

Query: 216 ---------------IHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
                          + ITIS G+AER  ++     +I  ADQALY AKK+GRN 
Sbjct: 351 KAGRQQRGQGGGGKTVQITISMGLAERTGEQPDAEAVIKAADQALYKAKKAGRNC 405


>gi|269968332|ref|ZP_06182352.1| GGDEF family protein [Vibrio alginolyticus 40B]
 gi|269827050|gb|EEZ81364.1| GGDEF family protein [Vibrio alginolyticus 40B]
          Length = 480

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 100/214 (46%), Gaps = 5/214 (2%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            I   +  +   Y L    +    + I ++     L  +     ++L I+  ++ +++  
Sbjct: 253 RILTRWSVVKTVYPLYLFPIAIFIMAIATLYHIFALKRMVALRTRQLTIANQQLLEMTLT 312

Query: 107 DCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ L N    I  L         L+++ FDID FK IND +GH  GD+ I  +++   
Sbjct: 313 DSLTKLYNRRHLIEQLALLNHLKRNLTVMVFDIDDFKSINDRYGHLAGDRAIVAIAEAAK 372

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
            +    M + R+GGEEFA      SE+EA   AN L K + +  + I  G +IH++IS G
Sbjct: 373 SMTDDRMTLARIGGEEFALVTSSLSEREALNFANMLCKAVYDQPV-ILGGQAIHLSISLG 431

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            A       I ++   AD+ +Y  K  G+NR V 
Sbjct: 432 CAYYPEFTHIVSL-QDADELMYQGKSEGKNRAVF 464


>gi|26247620|ref|NP_753660.1| RNase II stability modulator [Escherichia coli CFT073]
 gi|227886279|ref|ZP_04004084.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli 83972]
 gi|300971702|ref|ZP_07171575.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1]
 gi|26108022|gb|AAN80222.1|AE016760_81 Hypothetical protein yciR [Escherichia coli CFT073]
 gi|222033092|emb|CAP75832.1| Uncharacterized protein yciR [Escherichia coli LF82]
 gi|227836483|gb|EEJ46949.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli 83972]
 gi|300411188|gb|EFJ94726.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1]
 gi|307553349|gb|ADN46124.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli ABU 83972]
 gi|312945923|gb|ADR26750.1| RNase II stability modulator [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315295305|gb|EFU54635.1| diguanylate cyclase domain protein [Escherichia coli MS 153-1]
          Length = 661

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     LA+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEALASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|288917003|ref|ZP_06411374.1| serine/threonine protein kinase [Frankia sp. EUN1f]
 gi|288351543|gb|EFC85749.1| serine/threonine protein kinase [Frankia sp. EUN1f]
          Length = 1661

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 76/170 (44%), Gaps = 9/170 (5%)

Query: 99   RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151
            R+SQLS  D L+GL N       LGS  +        L++   DID+FK  ND++GH  G
Sbjct: 1491 RLSQLSVTDPLTGLANRRRLEDVLGSEWDRSRQQHVPLALAMVDIDHFKSYNDHYGHAAG 1550

Query: 152  DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
            D+ +  ++  L    G      R GGEEFA     + +  A   A  L   +       +
Sbjct: 1551 DRCLQRVAGCLATNVGDTELAARYGGEEFAIVMPDADQITAGERARCLCAAVARIAEPHA 1610

Query: 212  SGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFS 259
                  +T+S G+A            ++  AD ALY AK++GR RV   S
Sbjct: 1611 PARQRIVTVSVGVASVVPDRESHAIRLVELADSALYQAKRAGRGRVCTAS 1660


>gi|284046986|ref|YP_003397326.1| diguanylate cyclase/phosphodiesterase [Conexibacter woesei DSM
           14684]
 gi|283951207|gb|ADB53951.1| diguanylate cyclase/phosphodiesterase [Conexibacter woesei DSM
           14684]
          Length = 636

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 11/182 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             + E   +  RI   +  D L+GL N   F   L              ++ F D+D FK
Sbjct: 169 QRVAERIRARERIVHQTLHDALTGLPNRVLFEDRLELALVRARRRGTICAVFFLDVDRFK 228

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            +ND  GH  GD ++  ++ +L         V R GG+EFA    G + E++A  +A+ L
Sbjct: 229 IVNDTLGHRAGDALLREVAARLRGAIRASDTVARFGGDEFAVVCDGLADERDALRIASTL 288

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
              +  S      G S  +  S GIA    +E     ++  AD A+Y AK+ GR+R   +
Sbjct: 289 HAAL--SVPCELEGESHVLGASVGIALATGREATAEALLRDADAAMYRAKELGRSRTELY 346

Query: 259 SD 260
            +
Sbjct: 347 DE 348


>gi|242280532|ref|YP_002992661.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens
           DSM 2638]
 gi|242123426|gb|ACS81122.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens
           DSM 2638]
          Length = 763

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 13/179 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + E       + +L+  D L+GL N   F   L            K++I++ D+D FKQ
Sbjct: 588 DISERKEHEETMRRLAMFDNLTGLPNRVLFDDRLKQALSHANRNRMKVAILYADLDNFKQ 647

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND  GH  GD V+  ++ +      T   + R+GG+EF        +  E  ++A  + 
Sbjct: 648 VNDELGHMAGDTVLKEVAGRFSDCLRTSDTLSRIGGDEFIFILQDVGTSTEIEVVAQRI- 706

Query: 201 KIIENSQINISSGPSI-HITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
             I++ +     G  +  I  S GI+      E    +I  AD+A+Y AK  G+N    
Sbjct: 707 --IDSMRAPFYVGEKVYRIGASIGISVFPDNGEEKEKLIRIADEAMYKAKNKGKNGYSF 763


>gi|213622062|ref|ZP_03374845.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 288

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 103/232 (44%), Gaps = 12/232 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            F++ +  ++    + L   GL P       L   LSL +I +   LL  ++S     +L
Sbjct: 59  LFTVGMGLLLASCLVTLQLTGL-PVAMRSSSLEVTLSLPVIML-YPLLFAWVSYQTAIKL 116

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146
                R+  +S  D ++G+ N   +             ++ + +++  DID+FK IND +
Sbjct: 117 AEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFDHSRRHHREATLLIIDIDHFKSINDTW 176

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+ I  L+ QL +       +GR GG+EFA    G+    A    + + + +   
Sbjct: 177 GHDAGDEAIIALTRQLQITLRGSDIIGRFGGDEFAVIMCGTPADSAITAMSRVHERLNTL 236

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++     P + + IS G+A    +       +  AD ALY AK +GRNR   
Sbjct: 237 RLP--GAPQVMLRISVGVAPLTPQIGHYREWLKSADMALYKAKNAGRNRTEV 286


>gi|170748282|ref|YP_001754542.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170654804|gb|ACB23859.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 457

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 9/163 (5%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q++  D L+GL N     + LG+           L+ +  DID+FK IND+FGH  GD+V
Sbjct: 290 QMAVTDALTGLHNRRYLDNHLGTLFGDEAARRANLAALILDIDHFKGINDSFGHEAGDEV 349

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213
           +   ++++         V R GGEE       +   EA  +A  +R+ +E     +  + 
Sbjct: 350 LRGFAERVRQHTRPIDIVARYGGEEVVVILPEAGLVEAQGIAERIRERVEAVPFTVQRAS 409

Query: 214 PSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
            ++ +T+S G+A R   +   + ++ RAD ALY AK +GRNRV
Sbjct: 410 RTVSVTVSIGVAVRRGDDLGPADMLRRADLALYRAKAAGRNRV 452


>gi|149204072|ref|ZP_01881040.1| GGDEF domain protein [Roseovarius sp. TM1035]
 gi|149142514|gb|EDM30559.1| GGDEF domain protein [Roseovarius sp. TM1035]
          Length = 244

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 93/201 (46%), Gaps = 5/201 (2%)

Query: 65  LVENLSLVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           L+ +L+L+  ++T+ ++   L Y  G  L+        +      D L+G+ + ++  + 
Sbjct: 28  LLRDLALLPGALTVVMIAAPLAYAMGQRLRANQRHAQALEHALHHDSLTGVRSRASLRAG 87

Query: 122 L-GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           + G      +++  DID+FK+ ND  GH  GD  +   +  L         V RLGGEEF
Sbjct: 88  VPGDTARPCAVIVADIDHFKRFNDCHGHAAGDLALRHFAQLLRENCRAGDLVARLGGEEF 147

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                 ++   A   AN + + I    + + +GP   +T S G+A     + +   + RA
Sbjct: 148 VILMPMTNPANALRAANRMARRIRQGPVFLDTGPQ-TLTASFGVAALLPGDTLDAGLQRA 206

Query: 241 DQALYVAKKSGRNRVVCFSDI 261
           D+ALY AK +GR+R       
Sbjct: 207 DRALYRAKGAGRDRACLHDPA 227


>gi|82702267|ref|YP_411833.1| response regulator receiver /GGDEF/PAS/PAC domain-containing
           protein [Nitrosospira multiformis ATCC 25196]
 gi|82410332|gb|ABB74441.1| response regulator receiver (CheY-like) modulated diguanylate
           cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Nitrosospira multiformis ATCC 25196]
          Length = 756

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 11/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
            + +   +  ++ Q+SR D L+ L N   F  SL    ++       +S++F DID FK 
Sbjct: 276 DITQRKQADQQLLQVSRYDALTHLPNRILFYESLRKVIKQSEMNHRIVSVLFLDIDNFKN 335

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLR 200
           IND  G  +GD+++   S +L+        V R+GG+EF    + + +   A ++A+ +R
Sbjct: 336 INDTLGFALGDELLREFSLRLLECLRVTDIVARIGGDEFGCILVSADDLGNAGLVASKIR 395

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +   Q     G  + +T S GI+          T++   D A+Y +K +GR+    F+
Sbjct: 396 EALR--QPFDLQGHQVTVTASIGISVYPIDSIDADTLVKNGDTAMYQSKTAGRDTYRFFT 453

Query: 260 DIEN 263
              N
Sbjct: 454 PEMN 457


>gi|117676267|ref|YP_863843.1| diguanylate cyclase with GAF sensor [Shewanella sp. ANA-3]
 gi|262374269|ref|ZP_06067545.1| diguanylate cyclase with GAF sensor [Acinetobacter junii SH205]
 gi|117615091|gb|ABK50544.1| diguanylate cyclase with GAF sensor [Shewanella sp. ANA-3]
 gi|262310827|gb|EEY91915.1| diguanylate cyclase with GAF sensor [Acinetobacter junii SH205]
          Length = 325

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 80/187 (42%), Gaps = 14/187 (7%)

Query: 82  LGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIV 132
           L  +S  ++   EL     ++   S  D L+G+ N  AF        +      +   + 
Sbjct: 142 LQALSRQVIAILELKKVGEQLHNTSMTDALTGVNNRRAFDLKFEAEFARWQRTGQSFVLA 201

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK  ND++GH  GD+ ++ ++           F  R GGEEF     G+    A
Sbjct: 202 LIDIDHFKSFNDSYGHAAGDEALSQVAALFQRHSRNYDFFARYGGEEFVLILPGTDTASA 261

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
                 LR ++ N +  +       +T+S G+A     +    ++  ADQ LY AK  GR
Sbjct: 262 NKTLEKLRLVVANHEWLLR-----QLTVSIGLASADLFDDKKQLLEVADQMLYKAKTQGR 316

Query: 253 NRVVCFS 259
           N+   F+
Sbjct: 317 NQTSVFA 323


>gi|331005816|ref|ZP_08329173.1| multisensor diguanylate cyclase/phosphodiesterase [gamma
           proteobacterium IMCC1989]
 gi|330420377|gb|EGG94686.1| multisensor diguanylate cyclase/phosphodiesterase [gamma
           proteobacterium IMCC1989]
          Length = 571

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 20/206 (9%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           +Y++ EN++  ++  +I   +         E       +  L+  D L+GL N   F+  
Sbjct: 106 DYLVKENVNSEVLERSIRYAI---------ERKKIEQHLDHLAHYDHLTGLPNRVLFLDR 156

Query: 122 L-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L            + ++++ D++ FK+INDN+GH  GD+++A  S +L         V R
Sbjct: 157 LAQMVNLSQRSKHQFTLMYIDLNKFKEINDNYGHHTGDQLLAEFSARLKAAVRRSDTVAR 216

Query: 175 LGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           +GG+EF        S  E   LA  +   ++  Q        + +  S GIA        
Sbjct: 217 IGGDEFTVILNNVGSTPEIIFLAQKIIDSVQ--QPFFIGDNELEVGCSIGIAVFPDAGNT 274

Query: 234 STIIYR-ADQALYVAKKSGRNRVVCF 258
             ++ R AD A+Y AKK+G +    F
Sbjct: 275 VELLQRNADSAMYQAKKTGISSYRFF 300


>gi|323953840|gb|EGB49641.1| EAL domain-containing protein [Escherichia coli H263]
          Length = 661

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     LA+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEALASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LPRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|300935386|ref|ZP_07150385.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
 gi|300459416|gb|EFK22909.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
          Length = 661

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLKHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|121996937|ref|YP_001001724.1| diguanylate cyclase [Halorhodospira halophila SL1]
 gi|121588342|gb|ABM60922.1| diguanylate cyclase [Halorhodospira halophila SL1]
          Length = 636

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 11/171 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             L E   S  ++  ++  D L+GL N +  +  L           E ++++F D+++FK
Sbjct: 431 QALAEAERSQEQMRHMALHDHLTGLANRALLLDRLEKALEWARRNREAVALLFIDLNHFK 490

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
            IND  GH VGD+V+  L+ +L         V R GG+EF     G    + A  +A ++
Sbjct: 491 PINDEHGHEVGDRVLQQLARRLTGAVREVDTVARHGGDEFVILLEGVDGRRAAERVAENI 550

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
              ++  +  I +G    +++S GIA    H      +   AD A+YVAK 
Sbjct: 551 VASLD--EPVIVNGRRFQVSLSIGIAIYPEHGVSADELQRVADDAMYVAKA 599


>gi|326343291|gb|EGD67058.1| hypothetical protein ECoA_02734 [Escherichia coli O157:H7 str.
           1044]
          Length = 652

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 210 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 269

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 270 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 328

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 329 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 386

Query: 259 SDIENN 264
           +   N 
Sbjct: 387 TPEMNQ 392


>gi|326387022|ref|ZP_08208632.1| two component response regulator [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326208203|gb|EGD59010.1| two component response regulator [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 440

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 9/171 (5%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNF 146
                R+  L+  D L+GL N  AF          L + N   S+   DID+FK +ND +
Sbjct: 263 IKQMKRLRHLAERDPLTGLYNRRAFFERAYKILDGLKAGNAPGSLAILDIDHFKTVNDTY 322

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           GH  GD  +  +++ L+       F+  RLGGEEF          +   L  D+R+ IE 
Sbjct: 323 GHDCGDVALNAVANVLLTTAQERGFLTARLGGEEFVMMFHHRDSTQVFALCEDIRQAIEA 382

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +     P I +T S G++    +E +  ++  ADQ LY+AK  GRNRV+
Sbjct: 383 CDVRSEEAP-IALTASIGVSVIHLEEGMDNLLNAADQMLYLAKLQGRNRVI 432


>gi|255320380|ref|ZP_05361564.1| ggdef domain protein [Acinetobacter radioresistens SK82]
 gi|255302575|gb|EET81808.1| ggdef domain protein [Acinetobacter radioresistens SK82]
          Length = 423

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 105/235 (44%), Gaps = 24/235 (10%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
           F I F + I + + + +    +   T     E IL  N  L  ++  I     YI  S  
Sbjct: 192 FHISFEVIILSRVLLGSCLFGFTLSTMLIKRERILFLNTKLAQLNEKIQ----YIHAS-- 245

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
                    +  LS+ D L+ + N   F  +L S           LS++F D+D+FK  N
Sbjct: 246 --------ELLHLSQHDELTQISNRRNFDETLDSFYRQSRKEGTPLSLLFIDVDFFKNYN 297

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH +GDKVI  ++  +        FV R GGEEF      +    A  +A+++ + I
Sbjct: 298 DFYGHQMGDKVIYSIARAIKNSIRHRDFVARYGGEEFVVLLPETEAHGAYAVASNIYREI 357

Query: 204 ENSQINISSGP-SIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRV 255
           E   I       + +IT+S GI     +  +    ++  ADQALY AK+ GRN++
Sbjct: 358 ERLAIPHERSCIASYITVSLGITIYRGEAAVTQEALLESADQALYRAKQLGRNQI 412


>gi|254503088|ref|ZP_05115239.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
 gi|222439159|gb|EEE45838.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
          Length = 301

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 10/178 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQ 141
           +  + +EL  S + I      D L+G+ N     +   + + + S    +   DID+FK 
Sbjct: 126 TAKLEQELAASQSEI----FTDSLTGIYNRRYLEAEFAARHSRPSPKYFLALLDIDHFKN 181

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH +GD+V+  ++  +  +  +   + R GGEEFA     + E E A +   +R 
Sbjct: 182 VNDTYGHIIGDQVLKLVATAIKSLIRSQDVLCRYGGEEFAILFDSADETECADVVERVRL 241

Query: 202 IIENSQ-INISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +   + +N   G +I  +T+SAG+A     +   T + R D+ LY AK++GR+R+V 
Sbjct: 242 GVTKHKLVNRKQGHTIGSVTLSAGLALVEPDDDFDTALERVDRLLYKAKQAGRDRLVI 299


>gi|153838120|ref|ZP_01990787.1| FOG ggdef domain [Vibrio parahaemolyticus AQ3810]
 gi|149748506|gb|EDM59365.1| FOG ggdef domain [Vibrio parahaemolyticus AQ3810]
          Length = 656

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 87/179 (48%), Gaps = 12/179 (6%)

Query: 89  ILKEL--FISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
           IL +L       R+  L+  D L+GL N S F   L           ++ ++++ D+D F
Sbjct: 467 ILTDLSNAKEMERLEYLAHHDALTGLANRSKFHLELEDLVQRSGYQRDEFAVLYLDLDGF 526

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND +GH  GD+V+  ++D+L         + RL G+EF      ++++    +A  L
Sbjct: 527 KEINDTYGHDAGDEVLKRVADRLTSATRHSDLIARLSGDEFVMLVNPANQKVVTRIAEQL 586

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            + I  + I    G  + + +S G+      E   + I+  AD A+Y AKK+G+ + + 
Sbjct: 587 LESI-CAPIEYK-GNELKVGVSIGVKLVGVNERDATRILKSADTAMYQAKKAGKGQAIL 643


>gi|153833679|ref|ZP_01986346.1| ggdef family protein [Vibrio harveyi HY01]
 gi|148869958|gb|EDL68918.1| ggdef family protein [Vibrio harveyi HY01]
          Length = 374

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 9/189 (4%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------K 128
           + ++L+L        K+L  +  ++  LS  D L+ L N  + I +L    +        
Sbjct: 178 LKLNLVLEEKVDERTKQLSNANKQLEALSLTDSLTQLPNRRSAIKTLKKLWKDEDAKDLP 237

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L  +  D DYFKQ+ND  GH  GD V+  L+  L   F +   V RLGG+EF      + 
Sbjct: 238 LVCIMIDADYFKQVNDTCGHEAGDLVLTELAQALKHYFRSDDIVCRLGGDEFFVICPDTG 297

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247
            +    +A  +RK + +  +  S  P    +IS G+AER    E  + +I  AD+ +Y+A
Sbjct: 298 LEGGLHVAEAVRKQVSHMLVPTSFEPWRG-SISVGVAERRDNMETYTDLIRVADEGVYLA 356

Query: 248 KKSGRNRVV 256
           K++G+NRV 
Sbjct: 357 KQNGKNRVQ 365


>gi|148975465|ref|ZP_01812336.1| sensory box/GGDEF family protein [Vibrionales bacterium SWAT-3]
 gi|145964893|gb|EDK30144.1| sensory box/GGDEF family protein [Vibrionales bacterium SWAT-3]
          Length = 634

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 62/211 (29%), Positives = 97/211 (45%), Gaps = 19/211 (9%)

Query: 64  ILVENLSLVIISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFI--- 119
           ++ E L +  I     ++  Y++  + + +     N++  LS  D L+G  N   F    
Sbjct: 430 LITEILRIQTIKDAKGVIQFYVASFVDISKHKELENKLRNLSEKDALAGCWNRRKFDLEL 489

Query: 120 ----SSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
               S +  Y   E   +   DID+FK+IND FGH  GD+VI  ++  L        FV 
Sbjct: 490 RDECSRINRYPTREHSCLAILDIDHFKRINDRFGHDYGDRVIQTVAQVLQRECRETDFVA 549

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R+GGEEF      ++ +EA  + N LR  +     ++       +T+SAGI        +
Sbjct: 550 RIGGEEFGVILPHTTTEEADYVLNRLRIAVSLELDSV-------VTVSAGITNLTSDPAL 602

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +     AD ALY AK +GR+ V  F D E +
Sbjct: 603 N--YKCADLALYEAKAAGRDSVCLFLDTEMS 631


>gi|146283962|ref|YP_001174115.1| two-component response regulator [Pseudomonas stutzeri A1501]
 gi|145572167|gb|ABP81273.1| probable two-component response regulator [Pseudomonas stutzeri
           A1501]
          Length = 531

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/160 (35%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 106 IDCLSGLLNHSA---FIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+GL NH+     +          N  LS    DID+FKQ+ND FGHP+GD+VI  L
Sbjct: 373 RDSLTGLYNHTHSLQLLEDARFRARRDNRPLSFAMLDIDHFKQVNDTFGHPMGDRVIKSL 432

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         +GR GGEEFA     +  + A  + N++R+     +   +    +  
Sbjct: 433 ALFLKQRLRKTDHIGRYGGEEFAVVLPDTPAEAACKVLNEIRQRFAEIRFP-AQPRDLSC 491

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           T S GI E      + T+  +AD+ALY AK +GRNRV  +
Sbjct: 492 TFSCGITELTADAEVKTLTQQADEALYRAKHAGRNRVERY 531


>gi|90413430|ref|ZP_01221422.1| hypothetical protein P3TCK_11809 [Photobacterium profundum 3TCK]
 gi|90325518|gb|EAS41995.1| hypothetical protein P3TCK_11809 [Photobacterium profundum 3TCK]
          Length = 368

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 109/249 (43%), Gaps = 19/249 (7%)

Query: 18  NLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISIT 77
           +L  F      +Y +IF  + +++  +   +   ++ L P    E +L    S +I+   
Sbjct: 125 SLLGFYALRQAVYAAIFPVLLVSS--WANYVEAGHLLLLPS---EKMLA---SCIIVETG 176

Query: 78  ISLLLGYISGSILKELFISY--NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEK 128
              L  +   S+ K+        ++S L+  D L+ L N   F   +  +       N  
Sbjct: 177 RKTLYRWFYNSVEKDHENQRLVKKLSDLATKDQLTNLYNRRFFEYEIDKHYHLAKRNNLP 236

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGS 187
           LSI+  D+D+FK  ND+ GHP GD  +  ++  L      T   V R GGEEF      +
Sbjct: 237 LSIILIDVDHFKYYNDSLGHPAGDLCLKRVARILQKSLLRTSDSVSRYGGEEFIIILPNT 296

Query: 188 SEQEAAILANDLRKIIENSQINI-SSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
             + A  +A  +   ++   I   SS  S  +T+S GI     ++    ++  AD  LY 
Sbjct: 297 HLEGAKKVAERINNSLQQEAIPHPSSNVSNFVTLSQGITIWKTQKGPEQLVQEADDQLYK 356

Query: 247 AKKSGRNRV 255
           AK++GRN+ 
Sbjct: 357 AKEAGRNQY 365


>gi|315619367|gb|EFU99911.1| protein gmr [Escherichia coli 3431]
 gi|323162350|gb|EFZ48205.1| protein gmr [Escherichia coli E128010]
          Length = 639

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 197 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 256

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 257 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 315

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 316 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 373

Query: 259 SDIENN 264
           +   N 
Sbjct: 374 TPEMNQ 379


>gi|87120609|ref|ZP_01076503.1| regulatory component of sensory transduction system [Marinomonas
           sp. MED121]
 gi|86164252|gb|EAQ65523.1| regulatory component of sensory transduction system [Marinomonas
           sp. MED121]
          Length = 357

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 74/277 (26%), Positives = 125/277 (45%), Gaps = 29/277 (10%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYF----SIFFSIFIATVIF--IANIFLFYIGLTPF 58
           L D  +I L    NL  F+P  F+ Y+    +  +++   +++F  +    +  +   P 
Sbjct: 73  LVDMFAIGLM--ANLVYFNPVIFLPYYIANSAAIYAMKGISLVFKGLLAAIIGALISIPI 130

Query: 59  YGLEYILVENLSLVIISITISLL-------LGYISGSILKELFISYNRISQLSRIDCLSG 111
           +G EY +  NL  +I S     L       L ++ G IL +   +  +    +  D ++ 
Sbjct: 131 FGFEYRMDMNLYALIPSFLYLFLATHYVSYLSHLRGVILNK---AKAKAEVQANSDSITK 187

Query: 112 LLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV- 163
           + N   F   L           + LS++  DID+FK  ND +GHP+GD  +  ++  +  
Sbjct: 188 IANRRYFDRKLEEQWWRSYQSQQALSMLAIDIDFFKNYNDFYGHPLGDDCLNLVAQTIAG 247

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISA 222
            V  +   V R GGEEF      ++   A ++A  +   IE  QI    S  S  +T+S 
Sbjct: 248 SVTRSSDLVARTGGEEFNIILPNTNLDGAYMVAKKVLAAIEALQIEHRGSDVSNVVTVSI 307

Query: 223 GIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257
           G++        S+  ++  ADQALY AK+ GRNR+  
Sbjct: 308 GVSSIIPVASFSSRGLMLAADQALYQAKREGRNRISV 344


>gi|333004607|gb|EGK24131.1| protein gmr [Shigella flexneri VA-6]
          Length = 415

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 91/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 190 SGTDITEERRTQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 249

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 250 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 308

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    +TII  AD A+Y AK+ GR +   F
Sbjct: 309 --LTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSATIIRHADTAMYTAKEGGRGQFCVF 366

Query: 259 SDIENN 264
           +   N 
Sbjct: 367 TPEMNQ 372


>gi|291613133|ref|YP_003523290.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291583245|gb|ADE10903.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 1044

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 51/189 (26%), Positives = 80/189 (42%), Gaps = 12/189 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + E       I + +  D L+ L N   F                  +++  D+D FK
Sbjct: 596 SDITEKKRKDELIWEQANFDTLTNLPNRRLFADRFRQAISAGARSGRYGALLSLDLDQFK 655

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILAND 198
           ++ND FGH +GDK++  ++ +L         V R+GG+EF      LGS + EAAI A  
Sbjct: 656 RLNDTFGHSMGDKLLIEVARRLTSCVREEDTVARMGGDEFLVILNGLGSEQNEAAIRAEL 715

Query: 199 LRKIIENS--QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + + I N   +         H + S GI   R H +    ++   D A+Y +K  GRN +
Sbjct: 716 IAEKIRNELCRPYQLDKTEHHSSSSIGIVLFRGHSDDPERLLAHVDTAMYQSKAKGRNAI 775

Query: 256 VCFSDIENN 264
             F      
Sbjct: 776 CFFDSSMQE 784


>gi|289825184|ref|ZP_06544492.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 471

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF      +S    E  A+ + 
Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRIL 335

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSESLIRTADTAMYNAKEGGRGQFC 390

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 391 VFSPEMNQ 398


>gi|121586661|ref|ZP_01676445.1| sensory box/GGDEF family protein [Vibrio cholerae 2740-80]
 gi|147672290|ref|YP_001215141.1| sensory box/GGDEF family protein [Vibrio cholerae O395]
 gi|153818335|ref|ZP_01971002.1| sensory box/GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|227812505|ref|YP_002812515.1| sensory box/GGDEF family protein [Vibrio cholerae M66-2]
 gi|229505921|ref|ZP_04395430.1| sensory box/GGDEF family protein [Vibrio cholerae BX 330286]
 gi|298499714|ref|ZP_07009520.1| sensory box/GGDEF family protein [Vibrio cholerae MAK 757]
 gi|121549089|gb|EAX59124.1| sensory box/GGDEF family protein [Vibrio cholerae 2740-80]
 gi|126511148|gb|EAZ73742.1| sensory box/GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|146314673|gb|ABQ19213.1| sensory box/GGDEF family protein [Vibrio cholerae O395]
 gi|227011647|gb|ACP07858.1| sensory box/GGDEF family protein [Vibrio cholerae M66-2]
 gi|227015586|gb|ACP11795.1| sensory box/GGDEF family protein [Vibrio cholerae O395]
 gi|229356272|gb|EEO21190.1| sensory box/GGDEF family protein [Vibrio cholerae BX 330286]
 gi|297541695|gb|EFH77746.1| sensory box/GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 321

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 11/180 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            + + ++     ++ QL+  D L+ L N            +      + LS +  DID F
Sbjct: 140 STDITDIVELREQLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNF 199

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND FGH  GD+V+ FL+     V     F GR+GGEEF      +  + A  LA  +
Sbjct: 200 KLINDQFGHDKGDEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQI 259

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           R+          +    HI + AG++   H +  I+ I  R+DQALY AK++GRNR   +
Sbjct: 260 RQRFAEHPFFEQNE---HIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 316


>gi|73537827|ref|YP_298194.1| GGDEF [Ralstonia eutropha JMP134]
 gi|72121164|gb|AAZ63350.1| GGDEF [Ralstonia eutropha JMP134]
          Length = 297

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 84/178 (47%), Gaps = 6/178 (3%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-----SIVFFDIDYF 139
           I    L+E      ++   +R D L+GLLN  A         +       S++  D+D F
Sbjct: 109 ILRRKLRERASLTEQLEHQARTDSLTGLLNRRALERIAAQPADPAGPSTTSLILMDVDRF 168

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQIND  GHP GD+V+  ++D +  +      + R GGEEFA    G+S  EAA LA  L
Sbjct: 169 KQINDRHGHPAGDQVLRAVADLMRDMVDPDHALARFGGEEFAVLVPGASADEAASLAQAL 228

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
              I    I ++ G  + +T S G+A      P    +   AD A+Y AK  GRN V 
Sbjct: 229 CAAICAEPIRLADGTRLPVTASFGVATGLSGAPHWPRLFAAADAAMYRAKAEGRNCVR 286


>gi|117923718|ref|YP_864335.1| diguanylate cyclase/phosphodiesterase [Magnetococcus sp. MC-1]
 gi|117607474|gb|ABK42929.1| diguanylate cyclase/phosphodiesterase [Magnetococcus sp. MC-1]
          Length = 863

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 87/200 (43%), Gaps = 10/200 (5%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLG 123
           ++++  T+S LL  +    +K +      +   +  D L+GL NH          +    
Sbjct: 411 ILVMESTLSTLLNVVGS--VKAISKYTRDLEFYATRDPLTGLYNHRILWELLRTEVERAH 468

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            +N + +++  D+D FK IND+ GH VGD ++   +DQ+         +GR GG+EF   
Sbjct: 469 RHNHQFALLLVDLDNFKTINDSHGHAVGDDLLIAFADQIGATLRQGDILGRHGGDEFVIM 528

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQ 242
                E      A  +    +  ++    G SI I+ S G+A    H      +   AD 
Sbjct: 529 LPEVEEGVPFAAAERILSATDKIRVQTHDGQSIGISASIGVAIFPDHANSAKDLFLFADN 588

Query: 243 ALYVAKKSGRNRVVCFSDIE 262
            ++ AK  G++R    S+ +
Sbjct: 589 MMFKAKAEGKHRFTIPSEED 608


>gi|301046131|ref|ZP_07193306.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1]
 gi|300301864|gb|EFJ58249.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1]
          Length = 661

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     LA+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEALASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|222111912|ref|YP_002554176.1| diguanylate cyclase/phosphodiesterase [Acidovorax ebreus TPSY]
 gi|221731356|gb|ACM34176.1| diguanylate cyclase/phosphodiesterase [Acidovorax ebreus TPSY]
          Length = 894

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 14/221 (6%)

Query: 56  TPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH 115
           TP  G+E +L     + I     +     I    + +L ++   +  L+  D L+GL N 
Sbjct: 407 TPRGGVEQLLPNGHYVQITERATADGGVVIIYHDVTDLRLATAEVEHLAFYDQLTGLPNR 466

Query: 116 SAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
              +  LG             +++F D+D+FK +ND  GH +GD ++  ++ +L      
Sbjct: 467 RLLLDQLGDASASAVRTGTHGAVLFIDLDHFKTLNDTLGHEIGDYLLQQVARRLESGVRV 526

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-----SQINISSGPSIHITISAG 223
              V RLGG+EF     G    EA      +R + E      +Q    +G S H + S G
Sbjct: 527 GDIVARLGGDEFVVLLAGL-ATEAERAREQVRAVAEKVVQLLAQPYPIAGQSYHGSCSVG 585

Query: 224 IAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            A      +  + ++ +AD A+Y  K    N V  F     
Sbjct: 586 AALFGSVLQTAAEVLKQADIAMYQVKAQRGNAVCFFDPRMQ 626


>gi|241662833|ref|YP_002981193.1| PAS/PAC sensor containing diguanylate cyclase [Ralstonia pickettii
           12D]
 gi|240864860|gb|ACS62521.1| diguanylate cyclase with PAS/PAC sensor [Ralstonia pickettii 12D]
          Length = 416

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 85/179 (47%), Gaps = 12/179 (6%)

Query: 84  YISGS-ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFD 135
           Y+S S  + +       + + +  D L+GL N       L             L++   D
Sbjct: 237 YVSVSKDITKRVEREQALLRAATKDKLTGLHNRHHGEQLLAERYKTARTLQRPLTLAMCD 296

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK+IND FGHP GD+V+A ++D L     +   V R GGEEF       S+ +A  L
Sbjct: 297 IDHFKRINDEFGHPTGDRVLAEVADMLRQAVRSRDAVIRWGGEEFMIVLNECSQTDAVDL 356

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  +   +   +          +T+S G+A     E I  +I RAD ALY AK++GRNR
Sbjct: 357 AKRILDRVNAYE----DEEIPTLTLSLGLATLAPNEAIDELIARADSALYEAKRTGRNR 411


>gi|104784060|ref|YP_610558.1| sensory box protein [Pseudomonas entomophila L48]
 gi|95113047|emb|CAK17775.1| putative sensory box protein [Pseudomonas entomophila L48]
          Length = 897

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + +  ++  RI +L+  D L+ L N  AFI +L        N  + ++  DID FK+IN
Sbjct: 454 DVTQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDERFARDSNTPICLLLVDIDNFKRIN 513

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++  L+ +L     +   + R    EFA     +S ++   +A  L + +
Sbjct: 514 DSLGHQTGDKLLISLARRLRNSLSSGGSLARFASNEFAVLLDDTSLEDGQGVAQQLLRTL 573

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I++T S G+A    H    +T++  A  AL+ AK +G+++V  F+++ 
Sbjct: 574 DKPMF--VDNQLINVTASVGLACAPLHGSDPATLMKNAGLALHKAKANGKHQVQVFTEVL 631

Query: 263 NNTC 266
           N   
Sbjct: 632 NAEA 635


>gi|94263690|ref|ZP_01287498.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455889|gb|EAT06048.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 303

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 81/177 (45%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           EL    + +  ++ +D L+G+ N   F        S      + LS++  DID+FK  ND
Sbjct: 125 ELKRYQDFLQDIALLDGLTGIANRRNFDLALEREWSRAQRSAQPLSLLLLDIDFFKPYND 184

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           N+GH  GD  +  ++  L            R GGEEF      +  + A  +A ++R+ I
Sbjct: 185 NYGHGPGDDTLRRVATGLQQSLSRPADLAARYGGEEFVCLLPETDREGAQKMAEEVRRTI 244

Query: 204 ENSQINISSGPSI-HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               I  +      HIT+S G A          + ++  ADQALY AK+SGRNRV  
Sbjct: 245 AGLAIPHAHSQVADHITVSVGAASIAPNGNGNPAQLLESADQALYQAKESGRNRVEI 301


>gi|315297203|gb|EFU56483.1| diguanylate cyclase domain protein [Escherichia coli MS 16-3]
          Length = 661

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     LA+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEALASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|285808225|gb|ADC35759.1| diguanylate cyclase [uncultured bacterium 293]
          Length = 341

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 80/192 (41%), Gaps = 9/192 (4%)

Query: 75  SITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYN 126
           S  + LLL  +   +I  E  I + R  QL+  D L+ L N           I     + 
Sbjct: 148 SADLQLLLTLVEPCAIAIENAILFQRTEQLTITDDLTKLFNSRYLNHYLSREIKRCKRHG 207

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             L+++F D+D FK +ND  GH  G   +  +   L         + R GG+EF      
Sbjct: 208 IPLAVIFLDLDGFKSVNDQHGHLAGSATLTEVGTILGQAVRESDILARYGGDEFVVVLPE 267

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALY 245
           +    A ++A  +RK I +       G    I+ S GIA    H      +I +ADQA+Y
Sbjct: 268 TPAPGALVIAERIRKAIASHCFLRGQGLEARISASFGIAAYPDHGLTPEGLIQKADQAMY 327

Query: 246 VAKKSGRNRVVC 257
             K+  +N +  
Sbjct: 328 RVKERDKNGIEV 339


>gi|237749424|ref|ZP_04579904.1| predicted protein [Oxalobacter formigenes OXCC13]
 gi|229380786|gb|EEO30877.1| predicted protein [Oxalobacter formigenes OXCC13]
          Length = 806

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 12/175 (6%)

Query: 97  YNRI---SQLSRIDCLSGLLNHSAF-ISSLGSYNEKLS------IVFFDIDYFKQINDNF 146
           Y R+   ++ ++ D L+GLLN  AF + ++ +    L+      +   D D+FK +ND +
Sbjct: 621 YRRLGDATKQAQSDGLTGLLNRGAFEMRAMETLQRSLTDGHGVMLAIIDCDHFKLVNDTY 680

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIEN 205
           GH  GDKV++ L+D L   F     V R+GG+EFA     SS +   I     L +I   
Sbjct: 681 GHLTGDKVLSALADCLRENFRQDDLVSRIGGDEFAICCKISSGETGVINKIARLSEIWSK 740

Query: 206 SQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFS 259
           +      G +I+ T+S GIA           + + AD ALY AK+ GRN+   + 
Sbjct: 741 TPFETGEGKTIYSTLSIGIAISPADGTAYDKLFHHADIALYKAKQQGRNQYAIYD 795


>gi|229515726|ref|ZP_04405185.1| GGDEF family protein [Vibrio cholerae TMA 21]
 gi|229347495|gb|EEO12455.1| GGDEF family protein [Vibrio cholerae TMA 21]
          Length = 691

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 113/228 (49%), Gaps = 22/228 (9%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI------------- 95
           F +   + P +     ++    ++ +++ +SL++  I     +EL++             
Sbjct: 454 FSYVFIIEPHWWQRKEVIVMAGMLFLALAVSLVMWRIRILKRRELYLVEQVALQTQKLRL 513

Query: 96  SYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
              +  +LS+ D L+GL N  AF        S L + ++++SI   DID+FKQIND + H
Sbjct: 514 QAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIAVLDIDHFKQINDRYSH 573

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+ I  +S +L+   G    V R GGEEF    +G   ++A      LR  IE   +
Sbjct: 574 IIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVG-DPKQAWGYFEKLRCKIEQVDL 632

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  + P +++T+S G A+    E   T++  AD AL  AKK GRN VV
Sbjct: 633 SAVA-PGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNCVV 679


>gi|222110291|ref|YP_002552555.1| diguanylate cyclase [Acidovorax ebreus TPSY]
 gi|221729735|gb|ACM32555.1| diguanylate cyclase [Acidovorax ebreus TPSY]
          Length = 507

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 8/175 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           +  L    +R S  +R D L+G LN   F       I+     +  L +   D+D FK I
Sbjct: 333 IDHLRQELDRASAQARHDPLTGSLNRKGFAEAMEREIARARRQDAPLCVALLDVDNFKSI 392

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD  +  L+     V      + R GGEEF      +   E       L++ 
Sbjct: 393 NDRLGHTAGDAALVHLAQVTREVMRPQDQLARYGGEEFVIILPDTELAEGVKAMERLQRE 452

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  ++  +     + IT SAG+A+   ++  +  I RADQ +Y+AK++G+NRVV 
Sbjct: 453 L-TTRYFLKDQERVLITFSAGVAQVEGEQGSADAIRRADQGMYLAKRTGKNRVVA 506


>gi|197336023|ref|YP_002155793.1| sensory box/ggdef family protein [Vibrio fischeri MJ11]
 gi|197317513|gb|ACH66960.1| sensory box/ggdef family protein [Vibrio fischeri MJ11]
          Length = 631

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 17/188 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKL-------SIVFFDI 136
           S   +       N + +LS  D L+   N   F +        ++L        +   DI
Sbjct: 449 SFVDITARKALENCLRELSEKDMLTQCWNRRKFEAEFSKLTNKQRLMLEVNLSCLAIIDI 508

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK+IND +GH VGDKVI  ++  L     +  FV R+GGEEFA     +S +EA ++ 
Sbjct: 509 DYFKRINDQYGHDVGDKVIKNVARILQTESRSIDFVARIGGEEFAILLPNTSLKEAEVIL 568

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           N LR  I      ++ G S  +T+S G+ + C  +       RAD ALY +K +GRN++ 
Sbjct: 569 NRLRVAI-----YLADG-SQSVTVSGGVTDIC--DCGEATYKRADLALYESKTAGRNQIS 620

Query: 257 CFSDIENN 264
           CF   E +
Sbjct: 621 CFPSSEMD 628


>gi|90410831|ref|ZP_01218846.1| hypothetical protein P3TCK_27342 [Photobacterium profundum 3TCK]
 gi|90328462|gb|EAS44760.1| hypothetical protein P3TCK_27342 [Photobacterium profundum 3TCK]
          Length = 540

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 75/182 (41%), Gaps = 17/182 (9%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL +   ++  LS++D L+ + N   F   +         +   LS++  D+D FK  ND
Sbjct: 359 ELELVNQKLETLSKLDPLTNIANRRVFDERIIEEWRRSERHQLPLSLLIMDVDNFKSYND 418

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           N+GH  GD  +  ++  L  +         R GGEEF     G     A   A      I
Sbjct: 419 NYGHAAGDLCLKAIATTLEKLERRAGALFARYGGEEFVLLLPGQDTHAAQFSAKQALAEI 478

Query: 204 ENSQI------NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  Q+      N     SI +TIS G++            +  +AD ALY AK  GRNR 
Sbjct: 479 QQLQLIRTASTNTDCSSSI-VTISIGVSTVIPAAHHSHHELFKQADMALYEAKSQGRNRY 537

Query: 256 VC 257
             
Sbjct: 538 FV 539


>gi|24374604|ref|NP_718647.1| sensory box protein [Shewanella oneidensis MR-1]
 gi|24349221|gb|AAN56091.1|AE015745_3 sensory box protein [Shewanella oneidensis MR-1]
          Length = 1422

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 7/184 (3%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQIND 144
            S +         + +L+  D L+GL N S    +LG+   K    +++  D+D FK+IND
Sbjct: 974  SDISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLGNLVNKEINHALMVLDLDNFKRIND 1033

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKII 203
            + GH VGDK++  +S ++         + RLGG+EFA     +S+  A A +A  +    
Sbjct: 1034 SLGHQVGDKLLKLVSVRIKSSVPKNTNIYRLGGDEFAIVLDKTSDILASAAIAGRIVDAF 1093

Query: 204  ENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDIE 262
              + +       + + +S GI      E     ++ +AD A+Y AK +G N    +S+  
Sbjct: 1094 --NTVYEIDNEQLVLGVSVGIVLYPDDEQNEQALLRKADIAMYHAKSAGGNCYQFYSESL 1151

Query: 263  NNTC 266
            N   
Sbjct: 1152 NEHA 1155


>gi|254183238|ref|ZP_04889830.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1655]
 gi|184213771|gb|EDU10814.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1655]
          Length = 688

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 65/215 (30%), Positives = 100/215 (46%), Gaps = 15/215 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRIS----QLSRIDCLSGLLNHSAFIS 120
           L   ++L  ++I I  L+          L  S +R+S    +++  D L+ L N      
Sbjct: 214 LAATVALFTVAILIVALILSHFDVRTTLLAGSVSRLSGQIVRMAAFDTLTDLPNRRTLNE 273

Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            LG           KL+I+F D+D FK IN + GHP GD+V+   S +L+        V 
Sbjct: 274 HLGRALAAARARGGKLAILFMDLDGFKTINGSLGHPAGDEVLKAFSQRLLRCVRDGDIVA 333

Query: 174 RLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           RLGG+EF       SS+ EAA +A D+ + +   + N   G ++ +T S GIA      +
Sbjct: 334 RLGGDEFVVLLESVSSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGD 391

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              T++  AD A+Y AK+SGR     F    +   
Sbjct: 392 TADTLLRHADAAMYAAKRSGRCTYRFFEATMDEAA 426


>gi|326386387|ref|ZP_08208010.1| diguanylate cyclase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326209048|gb|EGD59842.1| diguanylate cyclase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 505

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 15/210 (7%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR---ISQLSRIDCLSGLLN 114
           F+G    ++  L     ++ IS+   +    I  E   +        +L+R D L+GL N
Sbjct: 268 FWGGGAQMLVLLGATWQTLWISVAATHRLTRIRLERDRARQAEATAHELARRDPLTGLRN 327

Query: 115 HSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
               + ++ +        +   +++  D+D FK IND  GH VGD+V+  L+ +L    G
Sbjct: 328 RRGLVEAVDAMIGQGEDEHSPFALLLVDVDKFKTINDTHGHEVGDQVLCRLAGRLSRWDG 387

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAE 226
               V R GGEEFA   +G S       A+ +R+ +         GP++  +T+S GIAE
Sbjct: 388 AMCAVARFGGEEFAMVVVGLSGPVLTQFADRVRQEVA----ECDHGPALRAVTVSIGIAE 443

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                   ++   AD+ALY AK++GRN V+
Sbjct: 444 ARGAADFQSLYRLADEALYRAKQAGRNCVM 473


>gi|228942448|ref|ZP_04104985.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228975380|ref|ZP_04135936.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228982017|ref|ZP_04142310.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407]
 gi|228777681|gb|EEM25955.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407]
 gi|228784362|gb|EEM32385.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228817190|gb|EEM63278.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 885

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
           Y+    + E      +I+ L+  D L+ L N  AF   L           +  +++F D+
Sbjct: 435 YLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKPFAVMFLDL 494

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAIL 195
           D FK IND  GH VGD ++  ++ +L  +  + M + RL G+EF        ++ +   +
Sbjct: 495 DRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQKI 554

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
           A+ +   + N    I +   + I+ S GIA      E   +I+  AD A+Y AK  G+N 
Sbjct: 555 ADRIVAAM-NEPFEIENQH-LQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 612

Query: 255 VVCFS 259
              ++
Sbjct: 613 SSLYT 617


>gi|254410977|ref|ZP_05024755.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196182332|gb|EDX77318.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 508

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 13/186 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           +      + +++      + +L +ID L+G+ N   F   L             LS++  
Sbjct: 313 IAIQQSELYQKVKTDNQHLQKLVKIDSLTGIANRRRFDQVLAEELICSRRNLTPLSLILC 372

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           DID+FK  ND +GH VGD  +  +++ +          V R GGEEF      +    A 
Sbjct: 373 DIDFFKAYNDTYGHWVGDNCLKEVAEAICQAAQRPSDLVARYGGEEFVVILSNTDNPGAF 432

Query: 194 ILANDLRKIIENSQINISSGPSIH--ITISAGIA--ERCHKEPISTIIYRADQALYVAKK 249
           I+A  +R  ++  +   +  P IH  +T+S GIA     H+   S ++  AD+ALY AK 
Sbjct: 433 IVAQKIRYQMDKLKRPHAKSP-IHPWVTLSLGIATTTPSHQLSSSELVQLADRALYKAKA 491

Query: 250 SGRNRV 255
            GR+R+
Sbjct: 492 LGRDRI 497


>gi|332994348|gb|AEF04403.1| diguanylate cyclase/phosphodiesterase [Alteromonas sp. SN2]
          Length = 538

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 64/264 (24%), Positives = 111/264 (42%), Gaps = 32/264 (12%)

Query: 26  TFMIYFSIFFSIFI---ATVIFIANIFLFYIGLTPFYGLEYILVENLSLV--IISITISL 80
              +Y     ++FI      +F    F    GL  F  L  +++ + S V  +  I   L
Sbjct: 14  VLWVYPIGAINLFINRFWPAVFWFGAFNIASGLLLFTPLSTLMIASYSFVEAVRFILTML 73

Query: 81  LLGYISGSILKELFISYNRI--------SQLSRIDCLSGLLNHSAFISSLGSY------- 125
            L  I  + L+    +Y  I         Q++  D L+GL N  +F ++L          
Sbjct: 74  ALNSICLAALRSEEQAYQTIMQLHADDIRQMAFYDTLTGLPNRWSFKTNLERLLARAGKD 133

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF--------VGRLGG 177
            +++ +++ D+D FKQ+ND +GH  GD+++   S++L                 + RL G
Sbjct: 134 KQRIGLLYIDLDNFKQVNDQYGHEAGDRLLLEFSERLWEEIRPTDQLLKPEAESLARLAG 193

Query: 178 EEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-IST 235
           +EF        E  +A+++A  +  I +          +  I  S GIA         S 
Sbjct: 194 DEFVVLLPNIKEPLDASVVATRILNIFDGG--FEVDDVTHMIYASIGIAVYPDDATEPSM 251

Query: 236 IIYRADQALYVAKKSGRNRVVCFS 259
           +++ AD A+Y AK +GRN    F+
Sbjct: 252 LLHHADAAMYDAKDNGRNCFRFFT 275


>gi|313897547|ref|ZP_07831089.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2]
 gi|312957499|gb|EFR39125.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2]
          Length = 754

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 82/184 (44%), Gaps = 9/184 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKL--SIVFFDIDY 138
           Y  G  + +  +   ++   +  D L+G+ N       L SY   N K   +++  D D 
Sbjct: 375 YSIGLDITKERLQMEKLRHKAEKDTLTGVYNRETMKQQLQSYLIENPKTVNALIMVDTDN 434

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILAN 197
           FKQIND  GH  GD V++ ++  +         VGR+GG+EF       S    A   A 
Sbjct: 435 FKQINDTHGHITGDLVLSEMAAGMKRNVRKDDLVGRIGGDEFTIFLKNISSATTAMDKAE 494

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
           +L  + +  Q+  +    I +T S GIA      E    +   AD+ALY AK+ G+N   
Sbjct: 495 ELLAMFQ--QLFSNEKKPIAVTCSMGIAMYPRDGESFQELYECADKALYQAKQRGKNGCC 552

Query: 257 CFSD 260
            + D
Sbjct: 553 MYDD 556


>gi|302879016|ref|YP_003847580.1| diguanylate cyclase [Gallionella capsiferriformans ES-2]
 gi|302581805|gb|ADL55816.1| diguanylate cyclase [Gallionella capsiferriformans ES-2]
          Length = 599

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 9/183 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
               +EL I+ + +++L+  D L+GL N       L             ++++F D+D F
Sbjct: 417 AQRTRELQIANDELTKLATHDALTGLPNRQLVNDRLLQALSAARREKTTMALMFIDLDEF 476

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K +ND +GH VGD ++   + ++         V R+GG+EF        +E +A  +A  
Sbjct: 477 KPVNDKYGHAVGDLLLKEAARRIHECLRKSDTVARIGGDEFIVLLPVIETELDACGVAEK 536

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +R  + N    +S       +         H      +   AD A+Y AK SGRN V  F
Sbjct: 537 IRASL-NLPFYLSGEQLSISSSIGIAIYPEHGLDEHALCQHADIAMYQAKNSGRNAVRIF 595

Query: 259 SDI 261
            + 
Sbjct: 596 REA 598


>gi|300927796|ref|ZP_07143360.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
 gi|300464189|gb|EFK27682.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
          Length = 619

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 177 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINHADNNKVGVVYLDLDNFK 236

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 237 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 295

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 296 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 353

Query: 259 SDIENN 264
           +   N 
Sbjct: 354 TPEMNQ 359


>gi|241762936|ref|ZP_04760999.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
 gi|241368111|gb|EER62316.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
          Length = 350

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 65/255 (25%), Positives = 110/255 (43%), Gaps = 29/255 (11%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGL---------------TPFYGLEYILVENLSLV 72
           +++F++  S+ + T+  +  I     GL                   G E+    ++ ++
Sbjct: 86  LMHFNLLPSVLLITLTVVDKITTGIRGLWLRSLPGMAVGMLAGGALTGFEWAPTTSMPVI 145

Query: 73  IISITISLL----LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125
           I  + +  L    +   S  +++++      + +L RID L+GL     +     +    
Sbjct: 146 IACLPVMALHTVSVSVASYRLIRQVSRQNQLLDELRRIDALTGLYGRGHWQEQAEAALRL 205

Query: 126 ----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                E   +V  DID+FKQIND  GH VGD+ I  L+  +     T    GR GG+EFA
Sbjct: 206 HHATGEPACLVMLDIDHFKQINDLHGHTVGDEAIRALAHIVRSNVRTTDCAGRYGGDEFA 265

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRA 240
               G    +A  +A  + + ++  +++    P +  T S G+A   H    +      A
Sbjct: 266 IVLRGMHMDKALAVAQRICEQVQAMRLH--DMPELQFTSSLGVAAADHRHSSLRAWTDAA 323

Query: 241 DQALYVAKKSGRNRV 255
           D  LY AK SGRNRV
Sbjct: 324 DAELYQAKASGRNRV 338


>gi|254506275|ref|ZP_05118418.1| ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219550755|gb|EED27737.1| ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 387

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 9/177 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
              K L  +  ++ +LS  D L+ L N    I  L          NE L  +  D DYFK
Sbjct: 190 QRTKALSEANKQLEELSLTDSLTNLPNRRCAIRKLKVYWQESVQNNEPLVCIMIDADYFK 249

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND  GH  GD+++  LS  L   F +   V RLGG+EF      +  +    +A   R
Sbjct: 250 QVNDTAGHDAGDRLLIELSQNLAHSFRSDDLVCRLGGDEFFVICPNTDLEGGLHIAEITR 309

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             +    + +        +IS G+  R       + +I  AD A+Y+AK SGRN+V 
Sbjct: 310 DRVSQMLVPVGESVWRG-SISVGVGVRTPNMNDYNDLIKVADNAVYLAKSSGRNQVA 365


>gi|218533379|ref|YP_002424194.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
 gi|218525682|gb|ACK86266.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
          Length = 184

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 86/173 (49%), Gaps = 11/173 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQIND 144
           + +    + + Q +  D L+ LLN  A +          S +  L+++  DID+FK IND
Sbjct: 6   ERVLKLQHALIQQADTDHLTQLLNRGALMRRAGDALANASASAPLTLLQIDIDHFKGIND 65

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGD VI  ++  L          GRLGGEEFA    G     AA++A+ +R    
Sbjct: 66  RYGHDVGDVVIRCVARVLRET---GAITGRLGGEEFAVLMPGHGLAGAAVVAHRIRSQCA 122

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + +       +  T S G+AE    + I T++ RAD ALY AK+ GRNRV  
Sbjct: 123 ATAVPRQ--RDLQFTASIGLAEWTTGDTIDTLLKRADLALYAAKRGGRNRVAV 173


>gi|83310380|ref|YP_420644.1| signal transduction protein [Magnetospirillum magneticum AMB-1]
 gi|82945221|dbj|BAE50085.1| Predicted signal transduction protein containing a membrane domain
           [Magnetospirillum magneticum AMB-1]
          Length = 831

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
             + E   +  ++ Q S  D L+ L N + F+  L       G    K++++F  +D FK
Sbjct: 141 RDVTEARETAEQLWQRSNFDPLTELPNRNLFLDRLLQALVLAGREGSKVAMLFIGLDGFK 200

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND+ GH +GDKV+   + +            R GG+EF     G   +  A +   +R
Sbjct: 201 NINDSLGHWIGDKVLQEAARRFQNCLRQGDTAARFGGDEFTVVLSGV--RATAEVEAVIR 258

Query: 201 KIIENSQ-INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            ++E  Q   +     I I+ S G+       E + +++  A  AL  AK++GRN    F
Sbjct: 259 SVLEVLQEPFVVEHHHILISCSIGVCMWPGDGEDVDSLMRNATAALQQAKQAGRNTFRFF 318

Query: 259 SDIENNTC 266
           +   +   
Sbjct: 319 TPAMDARA 326


>gi|306813688|ref|ZP_07447869.1| RNase II stability modulator [Escherichia coli NC101]
 gi|331657338|ref|ZP_08358300.1| protein gmr [Escherichia coli TA206]
 gi|305852962|gb|EFM53407.1| RNase II stability modulator [Escherichia coli NC101]
 gi|331055586|gb|EGI27595.1| protein gmr [Escherichia coli TA206]
          Length = 661

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     LA+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEALASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|293602568|ref|ZP_06685013.1| diguanylate cyclase with PAS/PAC sensor [Achromobacter piechaudii
           ATCC 43553]
 gi|292819044|gb|EFF78080.1| diguanylate cyclase with PAS/PAC sensor [Achromobacter piechaudii
           ATCC 43553]
          Length = 441

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + +       + + +  D L+GL N +    +L          ++ LS++  D+D+FK+
Sbjct: 243 DVSQQVEREQALLRAATKDKLTGLYNRAHGEKTLRDAVASAETGDDPLSLIIADVDHFKR 302

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+FGH  GD+V++ ++  L     +   + R GGEEF          +A  +A   R 
Sbjct: 303 INDHFGHLAGDRVLSEIARILQGAVRSQDTIIRWGGEEFVIVLADCPILDAIDIAERART 362

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +   +          +++S G+A+    E I  +I RAD ALY AK+ GRNR+  
Sbjct: 363 CVHAHR----DAEIGSLSLSLGVAQFVAGETIEELIARADTALYEAKRGGRNRLSV 414


>gi|229591092|ref|YP_002873211.1| putative transmembrane sensory box GGDEF domain protein
           [Pseudomonas fluorescens SBW25]
 gi|229362958|emb|CAY49889.1| putative transmembrane sensory box GGDEF domain protein
           [Pseudomonas fluorescens SBW25]
          Length = 352

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 71/259 (27%), Positives = 105/259 (40%), Gaps = 14/259 (5%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFS----IFIATVIFIANIFLFYIGLTPFYGLEYI 64
             +   H   L S +  + M   ++       +    V     I   ++   P +     
Sbjct: 85  FWVGAMHFNPLPSVTTLSMMTMNNVAIGGPRFMLAGWVAQALGIGTSWLLFAPAFIAVTT 144

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
             +  + + I +   L LG+I       L      +  LSR D LSGLLNH A+   L  
Sbjct: 145 QAQLYACLPILMVYPLALGWICYRQAVTLARHKRELLALSRTDSLSGLLNHGAWKDHLEL 204

Query: 125 YNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
             ++        +I   DID+FK IND +GH  GD V+  LS  L          GR GG
Sbjct: 205 EFQRCRRGCAGAAIALIDIDHFKIINDTYGHVTGDIVLRQLSKVLRQNLRATDLAGRYGG 264

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTI 236
           +EF     G     A  + + LR       +  +  P++  ++S G+A         +  
Sbjct: 265 DEFCVILPGMPLNRATEVMDALRDRFNA--LAYAQDPTLRASLSIGLAPYQPSHADSTHW 322

Query: 237 IYRADQALYVAKKSGRNRV 255
           +  ADQALY AK SGRNRV
Sbjct: 323 LNDADQALYEAKSSGRNRV 341


>gi|261419237|ref|YP_003252919.1| response regulator receiver modulated diguanylate cyclase
           [Geobacillus sp. Y412MC61]
 gi|319766053|ref|YP_004131554.1| response regulator receiver modulated diguanylate cyclase
           [Geobacillus sp. Y412MC52]
 gi|261375694|gb|ACX78437.1| response regulator receiver modulated diguanylate cyclase
           [Geobacillus sp. Y412MC61]
 gi|317110919|gb|ADU93411.1| response regulator receiver modulated diguanylate cyclase
           [Geobacillus sp. Y412MC52]
          Length = 542

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 82/174 (47%), Gaps = 9/174 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           ++ L     +I  L  ID L+G+ N            S L        +   D+D+FKQI
Sbjct: 217 VRRLVEKKRKIDDLVLIDELTGVYNRKYLPQVYVRLRSELERSGTPSCLALLDLDHFKQI 276

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH  GD V+  L+  L         V RLGGEEF      +S+ EA  +   LR+ 
Sbjct: 277 NDRFGHLAGDAVLQKLAAFLRQHTRGVDTVVRLGGEEFVVWLAKTSKSEARAVLERLRRQ 336

Query: 203 IENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
                I+ + G  +  T SAG+ E C   +P+   +  AD+ALY AK+ G NR+
Sbjct: 337 FAAETID-ADGERLSCTFSAGLVEFCDPDQPLDYWLRVADRALYAAKRGGGNRI 389


>gi|218689278|ref|YP_002397490.1| RNase II stability modulator [Escherichia coli ED1a]
 gi|218426842|emb|CAR07694.2| modulator of Rnase II stability [Escherichia coli ED1a]
          Length = 661

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     LA+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEALASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|149180971|ref|ZP_01859472.1| hypothetical protein BSG1_11041 [Bacillus sp. SG-1]
 gi|148851255|gb|EDL65404.1| hypothetical protein BSG1_11041 [Bacillus sp. SG-1]
          Length = 593

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 14/182 (7%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
             ++ +L   Y +    S  D L+G  N + F   L         YN+ ++++F DID F
Sbjct: 210 NEMVYDLEDRYQK----SVTDSLTGSYNSAYFKQKLAEVMKDARYYNQPMALLFCDIDNF 265

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND+ GH  GDKV+  ++  +         V R GGEEF      +    A  +A  +
Sbjct: 266 KKLNDHEGHLYGDKVLKQIAKVIHDHVREHDIVCRYGGEEFVIIMRDTDASTATAIAEKV 325

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           R ++    +N        IT+S G+A          I++ ADQA+Y AK  G+NRVV   
Sbjct: 326 RHMVA---LNGHRSILTPITMSIGVAVFPQDADEENIVHIADQAMYTAKSLGKNRVVAAQ 382

Query: 260 DI 261
           D+
Sbjct: 383 DL 384


>gi|302529694|ref|ZP_07282036.1| predicted protein [Streptomyces sp. AA4]
 gi|302438589|gb|EFL10405.1| predicted protein [Streptomyces sp. AA4]
          Length = 454

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 63/270 (23%), Positives = 109/270 (40%), Gaps = 29/270 (10%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIF--LFYIGLTPFYGLEYIL---------VE 67
           L   SP   +  F I   +  +     A +   L  +G T    L  +L         + 
Sbjct: 179 LARLSPANSLQVFGILMLVGFSYAALQAIVIGGLLALGGTSAPTLRNVLGTKDDNLLELS 238

Query: 68  NLSLVIISITISL-----LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
            +SL  I+  + +     ++  +  ++L       N++   +R D  +G+ N   +  S 
Sbjct: 239 TISLGTIATILLVNIPPAIVILVLITVLGNRLAEINQLQSEARTDPKTGIFNVRGWSESA 298

Query: 123 GSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                      E L+++  D+D+FK IND +GHP GD V+  ++  L  +      +GR 
Sbjct: 299 ERALARAARGGETLALLMIDLDHFKWINDTYGHPAGDDVLRTVAQTLDEITRPKDIIGRF 358

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI-----TISAGIAERC-H 229
           GGEEF           A + A  +R  I + +I  +            T S G+A    +
Sbjct: 359 GGEEFLILLPDVDTTAAKVTAERIRTAIADQRIVTTDKRGGSALITGRTASIGVALLGVN 418

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              +  ++  AD A+Y AK+ GRN+V    
Sbjct: 419 GTALEQLLQAADAAVYTAKEGGRNQVRFAD 448


>gi|332094741|gb|EGI99785.1| protein gmr [Shigella boydii 3594-74]
          Length = 632

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 190 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 249

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 250 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 308

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 309 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 366

Query: 259 SDIENN 264
           +   N 
Sbjct: 367 TPEMNQ 372


>gi|330959165|gb|EGH59425.1| response regulator WspR [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 334

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+GL N   F   L            +LS++  D+DYFK  N
Sbjct: 156 QQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRAVRDQTQLSMLMIDVDYFKAYN 215

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DNFGH  GD+ +  ++  +            R GGEEFA     +S   A +LA  LR+ 
Sbjct: 216 DNFGHLEGDEALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQS 275

Query: 203 IENSQI-NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVC 257
           +   +I +I+      +T+S G+A    +  +S   +I  AD+ LY+AK +GRN+V  
Sbjct: 276 VAGMKIPHIAPAAGSSLTVSIGVATVTPQLEMSSRELILDADKGLYLAKNNGRNQVAV 333


>gi|152997837|ref|YP_001342672.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150838761|gb|ABR72737.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 452

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 10/165 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISS------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           ++ +L+  D L+G  N   +         L +     S++  D+D+FK+IND  GH VGD
Sbjct: 291 QLIELATRDKLTGAFNRHKWDEQIKDELALANRGHHFSLILLDVDHFKKINDAHGHDVGD 350

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  L + L         + R+GGEEFA     ++ ++A +LA  LRK IE     ++ 
Sbjct: 351 NVLKLLVNTLRKRLRETDMLFRIGGEEFAVLLRDTNCEDAGVLAEQLRKKIE----TLNE 406

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           G     TIS G+ +    +  S I+ RAD  LY AK +GRNRV+ 
Sbjct: 407 GGMPSFTISLGVTDYQDFDDQSRIVKRADILLYEAKGAGRNRVMI 451


>gi|71734371|ref|YP_276013.1| response regulator WspR [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|257487127|ref|ZP_05641168.1| response regulator WspR [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|298488300|ref|ZP_07006332.1| Two-component response regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71554924|gb|AAZ34135.1| response regulator WspR [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|298157122|gb|EFH98210.1| Two-component response regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320323153|gb|EFW79242.1| response regulator WspR [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320329575|gb|EFW85564.1| response regulator WspR [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330878329|gb|EGH12478.1| response regulator WspR [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330985075|gb|EGH83178.1| response regulator WspR [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331009248|gb|EGH89304.1| response regulator WspR [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 334

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+GL N   F   L            +LS++  D+DYFK  N
Sbjct: 156 QQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRAIRDQAQLSLLMIDVDYFKAYN 215

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DNFGH  GD+ +  ++  +            R GGEEFA     +S   A +LA  LR+ 
Sbjct: 216 DNFGHLEGDEALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQS 275

Query: 203 IENSQI-NISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
           +    I +I+  P   +T+S G+A            +I  AD+ LY+AK +GRN+V  
Sbjct: 276 VSGMNIPHIAPTPGSSLTVSIGVATVTPQVGMHSRQLILDADKGLYLAKNNGRNQVAA 333


>gi|330943152|gb|EGH45569.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 675

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + +  ++  RI +L+  D L+ L N  AFI +L        +  +S++  DID FK+IN
Sbjct: 232 DITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDERFARDTDTPMSLLLVDIDNFKRIN 291

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++  L+ +L         + R    EFA     + ++     A  +   +
Sbjct: 292 DSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLIDNTDQEAGQATATQVLATL 351

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I +T S G+A    H     T++  A  AL+ AK +G+++V  F++  
Sbjct: 352 DKPMF--VDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFTEAL 409

Query: 263 NNTC 266
           N   
Sbjct: 410 NAEA 413


>gi|293404969|ref|ZP_06648961.1| diguanylate cyclase yddV [Escherichia coli FVEC1412]
 gi|298380616|ref|ZP_06990215.1| diguanylate cyclase yddV [Escherichia coli FVEC1302]
 gi|300895690|ref|ZP_07114287.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1]
 gi|291427177|gb|EFF00204.1| diguanylate cyclase yddV [Escherichia coli FVEC1412]
 gi|298278058|gb|EFI19572.1| diguanylate cyclase yddV [Escherichia coli FVEC1302]
 gi|300360384|gb|EFJ76254.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1]
          Length = 460

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 281 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 339 EINDTWGHNTGDEILRKISQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 399 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 456


>gi|239909013|ref|YP_002955755.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239798880|dbj|BAH77869.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 555

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
             +  D L+G  N   F        +  G     L++   D+D+FK +ND  GHPVGD++
Sbjct: 370 HQAHHDALTGCANRRRFGEAVAMAAAEAGRSGAPLALAMIDLDHFKLVNDRHGHPVGDRM 429

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +S  +         + RLGGEEFA    G  E  A    + +R  I  + +++  G 
Sbjct: 430 LRHVSGLIRGRLRPGELLARLGGEEFAVLLPGLDEAAARSRMDAVRLEIAATPLSV-DGL 488

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +  T+S G+      +P+  +   AD ALY+AKK GR++VV  S
Sbjct: 489 DVPQTVSVGVTADTGGKPVQELQREADMALYLAKKCGRDQVVAAS 533


>gi|227822959|ref|YP_002826931.1| putative GGDEF/EAL domain transcriptional regulator [Sinorhizobium
           fredii NGR234]
 gi|227341960|gb|ACP26178.1| putative GGDEF/EAL domain transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 784

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 56/191 (29%), Positives = 90/191 (47%), Gaps = 12/191 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           I    L     +   I  L+  D L+ L N S+F   +        + NE+L+I   D+D
Sbjct: 335 IFVRDLSARKEAERTIEHLAHHDALTDLSNRSSFERRMSQALTVAAARNEQLAIFCLDLD 394

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LA 196
            FK +ND FGH  GD+++  ++D L    G    + RLGG+EFA    G+++ EAA  L+
Sbjct: 395 RFKAVNDIFGHGEGDRILRKVADILRAAAGEADTIARLGGDEFAILQTGAAQPEAARQLS 454

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
           + + ++             + + +S G+A           +   AD ALY AK+SG+  +
Sbjct: 455 DRILRLFAEEMDTHRD--PMAVGVSMGVAVYPGDGTTAERLCSNADTALYRAKQSGKG-I 511

Query: 256 VCFSDIENNTC 266
            CF D E +  
Sbjct: 512 ACFFDAEMDDA 522


>gi|166712733|ref|ZP_02243940.1| putative signal transduction protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 547

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 77/179 (43%), Gaps = 14/179 (7%)

Query: 95  ISYNRISQLSR---IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
            S NR+  L+     D L+G+ N                     LSI F D+D FK++ND
Sbjct: 356 ESENRMRHLAEQASRDALTGVFNRHQLGTALTHEFELASRQGWPLSIAFIDLDEFKRVND 415

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD+V+   +  L  +  T   V R GGEEF      +    A ++   +     
Sbjct: 416 AHGHLVGDEVLRNFAQTLQRLVRTSDLVARYGGEEFLVILPNTPADSALMVIERILTETA 475

Query: 205 NSQINISSGPSIHITISAGIAERCHK----EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +    G  +HIT SAG+A         E I  ++  AD  LY +K  GRNRV  + 
Sbjct: 476 RTPMAQLPGGPLHITFSAGLATHGGVERQFESIEHLLQAADSTLYRSKHRGRNRVTAYD 534


>gi|121726400|ref|ZP_01679674.1| sensory box/GGDEF family protein [Vibrio cholerae V52]
 gi|121631148|gb|EAX63523.1| sensory box/GGDEF family protein [Vibrio cholerae V52]
          Length = 321

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 11/180 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            + + ++     ++ QL+  D L+ L N            +      + LS +  DID F
Sbjct: 140 STDITDIVELREQLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNF 199

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND FGH  GD+V+ FL+     V     F GR+GGEEF      +  + A  LA  +
Sbjct: 200 KLINDQFGHDKGDEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQI 259

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           R+          +    HI + AG++   H +  I+ I  R+DQALY AK++GRNR   +
Sbjct: 260 RQRFAEHPFFEQNE---HIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 316


>gi|289626069|ref|ZP_06459023.1| response regulator WspR [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330867548|gb|EGH02257.1| response regulator WspR [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 328

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+GL N   F   L            +LS++  D+DYFK  N
Sbjct: 150 QQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRAIRDQAQLSLLMIDVDYFKAYN 209

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DNFGH  GD+ +  ++  +            R GGEEFA     +S   A +LA  LR+ 
Sbjct: 210 DNFGHLEGDEALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQS 269

Query: 203 IENSQI-NISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
           +    I +I+  P   +T+S G+A            +I  AD+ LY+AK +GRN+V  
Sbjct: 270 VSGMNIPHIAPTPGSSLTVSIGVATVTPQVGMHSRQLILDADKGLYLAKNNGRNQVAA 327


>gi|194288798|ref|YP_002004705.1| sensor protein [Cupriavidus taiwanensis LMG 19424]
 gi|193222633|emb|CAQ68636.1| putative diguanylate cyclase with Mase1 and PAS domains
           [Cupriavidus taiwanensis LMG 19424]
          Length = 1127

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 89/208 (42%), Gaps = 9/208 (4%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS- 124
           V++ +  +++    +L   +    +         +++ +  D L+GL N + F   L   
Sbjct: 652 VQDSAAPVLTARGEVLGAVLVFQDITAARALQRELARSAMHDALTGLPNRTWFEKRLRES 711

Query: 125 ------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                 +  + ++ F D+D FK +ND  GH  GD ++  L   +         + RLGG+
Sbjct: 712 CDAARLHGHRAALCFIDLDRFKIVNDTAGHGAGDVLLRELGYLIRNHVRPDDVLARLGGD 771

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTII 237
           EFA      +  +A  +   +   I   +     G    +  S GIA       P+S ++
Sbjct: 772 EFALLLKDCTVDQAEQVCQGVIDAIRGRRFPW-EGRVYDVGASIGIAAIDLDVPPVSELM 830

Query: 238 YRADQALYVAKKSGRNRVVCFSDIENNT 265
            RAD A Y AK +GR+RV  +   E++ 
Sbjct: 831 SRADVACYAAKAAGRSRVSVYRRDESDA 858


>gi|77361562|ref|YP_341137.1| hypothetical protein PSHAa2647 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876473|emb|CAI87695.1| conserved protein of unknown function with GGDEF domain
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 368

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 73/251 (29%), Positives = 110/251 (43%), Gaps = 26/251 (10%)

Query: 24  PHTFMI----YFSIFFSI---FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISI 76
           P TF +    + SI  SI     A ++++       IGL+  +         + + I  +
Sbjct: 113 PFTFFLVGRNWGSILSSIAFGICAYLVYLQQQLSITIGLSALFNF-------IEVSIAHV 165

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLS- 130
            +         S    L      I QL+  D L+GL N   F   L        NE+ S 
Sbjct: 166 LLFRFYEKTRFSAYSHLSKRNAEIKQLAETDKLTGLYNRQKFDFELSQLLSENNNERKSN 225

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            ++  DID+FK++ND +GH  GD V++  ++ L         + R GGEEF      SS 
Sbjct: 226 IVMICDIDHFKKVNDTYGHLAGDNVLSEFANILQNKLTNSALIARWGGEEFTIILRDSSL 285

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
             A   A +LR  I    I+  +     +TIS GIA+    +    ++ RAD+ALY AK 
Sbjct: 286 DNAINEAEELRAFIATHLIDNRA-----LTISIGIAKAHVDDTALHLLERADKALYKAKL 340

Query: 250 SGRNRVVCFSD 260
            GR++V   SD
Sbjct: 341 QGRDQVCVASD 351


>gi|315135924|dbj|BAJ43083.1| RNase II stability modulator [Escherichia coli DH1]
          Length = 632

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 190 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 249

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 250 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 308

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 309 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 366

Query: 259 SDIENN 264
           +   N 
Sbjct: 367 TPEMNQ 372


>gi|229130551|ref|ZP_04259507.1| Sensory box/GGDEF [Bacillus cereus BDRD-Cer4]
 gi|228652890|gb|EEL08772.1| Sensory box/GGDEF [Bacillus cereus BDRD-Cer4]
          Length = 885

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
           Y+    + E      +I+ L+  D L+ L N  AF   L           +  +++F D+
Sbjct: 435 YLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKPFAVMFLDL 494

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAIL 195
           D FK IND  GH VGD ++  ++ +L  +  + M + RL G+EF        ++ +   +
Sbjct: 495 DRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQKI 554

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
           A+ +   + N    I +   + I+ S GIA      E   +I+  AD A+Y AK  G+N 
Sbjct: 555 ADRIVAAM-NEPFEIENQH-LQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 612

Query: 255 VVCFS 259
              ++
Sbjct: 613 SSLYT 617


>gi|24375197|ref|NP_719240.1| extracellular solute-binding protein [Shewanella oneidensis MR-1]
 gi|24349982|gb|AAN56684.1|AE015804_6 extracellular solute-binding protein, family 3/GGDEF domain protein
           [Shewanella oneidensis MR-1]
          Length = 461

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 4/214 (1%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            I   +I +   Y    I      ++   +  +L L        ++L  + ++++ L++ 
Sbjct: 245 RILSRWIHIETVYPRYLIPALAAGILSAGLFYTLQLRRTVRIRTRQLEDANHKLTLLAQT 304

Query: 107 DCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+G+ N   F + L    +    L+++ FDID FK IND +GH  GD  I  ++  + 
Sbjct: 305 DSLTGIHNRHYFFNQLSDTQDLASSLTLIVFDIDDFKSINDTYGHSAGDNAICLITTCVR 364

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
            V    M   R+GGEEFA  A   S Q +  LA  + + I   ++ ++S   I +T+S G
Sbjct: 365 EVLEPEMQFARIGGEEFAILARDKSAQASQQLAKRICQQIAQKKLPLASNTLISLTVSLG 424

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            A     +   T+   AD  +Y AK+ G+N+ V 
Sbjct: 425 CAFYPTPDNPFTL-NAADSLMYEAKRKGKNQAVF 457


>gi|326797147|ref|YP_004314967.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
 gi|326547911|gb|ADZ93131.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
          Length = 790

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 118/248 (47%), Gaps = 21/248 (8%)

Query: 31  FSIFFSIF---IATVIFIANIFLFYIGLTPFYGLEYI---LVENLSLVIISITISLLLGY 84
           +S+ F IF   +A V+ +  IF     LTP   L Y+   + +N  +   + T    +  
Sbjct: 270 YSLIFMIFTGVVAAVLLLLRIFFLNSILTPLNTLSYMTFRIGQNEKITYKAATGVKEMDE 329

Query: 85  ISG---SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFF 134
           +     S+ ++   +  ++ Q ++ D L+G  N   F  +L         YN+K +++  
Sbjct: 330 LQNRFISMAEKKEQAEKKMIQQAQTDLLTGAGNRERFNKALFEQLREAKVYNQKFALLLI 389

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS--SEQEA 192
           D+D FK++ND  GH VGD+++   + +L+ +      + RLGG+EF     G+  +++  
Sbjct: 390 DLDLFKEVNDTRGHQVGDEILRITAKRLMALCPKQQLICRLGGDEFIFLLSGTNVNKEYV 449

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSG 251
                +++  +       S G  IH++ S G+A           ++  ADQALY AK++G
Sbjct: 450 HDFCQNIQTQVRQ-PFEFSQG-EIHVSCSIGVAMYPEDGVDEREVMAAADQALYSAKRAG 507

Query: 252 RNRVVCFS 259
           RN V  F 
Sbjct: 508 RNEVKDFD 515


>gi|298290964|ref|YP_003692903.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Starkeya novella DSM 506]
 gi|296927475|gb|ADH88284.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Starkeya novella DSM 506]
          Length = 713

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 80/180 (44%), Gaps = 12/180 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + +   +  R+  L+  D L+GL N       L          ++  ++ F D+D FK 
Sbjct: 264 DITQRREAEKRLEYLASHDSLTGLPNRLMLRDHLRRELARGRRGDQNFALHFIDLDRFKA 323

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH  GD+++  ++D L  + G    V RLGG+EFA         E    A  L +
Sbjct: 324 INDAHGHHRGDRLLQNVADSLTRLVGPSHTVARLGGDEFAVLQPDIDGPED---AERLAR 380

Query: 202 IIENSQINISSGPSI-HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I +   +  +GPS   I  S GI            ++  +DQA+Y+AK  G N V  F+
Sbjct: 381 AILHMLTDEDAGPSAPRIGASIGITVAPLDGADPDELLRNSDQAMYLAKSLGGNTVRFFA 440


>gi|239627960|ref|ZP_04670991.1| response regulator pleD [Clostridiales bacterium 1_7_47_FAA]
 gi|239518106|gb|EEQ57972.1| response regulator pleD [Clostridiales bacterium 1_7_47FAA]
          Length = 314

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 11/179 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSA----FISSLGSYNEKLS---IVFFDIDYFKQIN 143
           +EL  S  +++ ++  D L+GL N        +  + S  ++         DID FK++N
Sbjct: 139 RELRNSMEKLNYMAYRDGLTGLYNRRYVVGDLLEDMRSCGKEAVETVFAMVDIDDFKRVN 198

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD  +  +++ L         V R GGEEF       +  EA  +   +R+ +
Sbjct: 199 DTYGHDAGDMALVCIANILESNCREH-RVVRWGGEEFLIILFNVTVDEAFDICERIRRQV 257

Query: 204 ENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           E  Q  +  G      TI+ G+      E +   I  AD+ALY  K++G+N+ V F D+
Sbjct: 258 E--QFVVPYGKEWFSCTITLGLHVFKPHEALEECISCADKALYYGKRNGKNQGVWFEDL 314


>gi|153827501|ref|ZP_01980168.1| diguanylate cyclase [Vibrio cholerae MZO-2]
 gi|149738577|gb|EDM52932.1| diguanylate cyclase [Vibrio cholerae MZO-2]
          Length = 310

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 90/182 (49%), Gaps = 9/182 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           +   + +  +   R+  LS +D L+ + N  +F S L         +    S++ FDID 
Sbjct: 122 TAKNITQQQMLEQRLKILSEMDTLTEVHNRRSFSSLLSQSIKEYGIHGVTFSLILFDIDK 181

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND  GHP GD VI ++   +         +GRLGGEEF      S+  +A  +A  
Sbjct: 182 FKWVNDTLGHPAGDDVIKYVVKVIQQELHFTDVIGRLGGEEFGIILRDSNHDKAFKVAEK 241

Query: 199 LRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           LR  +  +   + +  S+ +TIS G+ +   +   +  +I RAD+A+Y +K  GRN+  C
Sbjct: 242 LRIRLAETMCELET-CSVRVTISLGVTQIMPNDSSMRHLISRADKAMYYSKMHGRNQTCC 300

Query: 258 FS 259
           + 
Sbjct: 301 YE 302


>gi|15891688|ref|NP_357360.1| GGDEF family protein [Agrobacterium tumefaciens str. C58]
 gi|15160142|gb|AAK90145.1| GGDEF family protein [Agrobacterium tumefaciens str. C58]
          Length = 772

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 12/187 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQI 142
           L+++     ++  ++  D L+GL N    +         L +  +  +++  D+D FK +
Sbjct: 311 LRQIRDMAQQLEHMAHHDALTGLPNRVLLMKTLETRLEHLSASGQPFNVMLLDLDRFKAV 370

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS--EQEAAILANDLR 200
           ND  GH  GD ++  ++ ++  V G    V RLGG+EFA     ++  E +AA+LA  + 
Sbjct: 371 NDTLGHAAGDALLVAVASRISAVLGENDMVSRLGGDEFAIIQSTNADCESDAAMLAARVV 430

Query: 201 KIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +  S      G +I I  S GIA    H    + ++  AD  LY AK  G    V + 
Sbjct: 431 HAVSRS--FSLEGSTISIDTSIGIACAPVHGTSATQLLQHADLGLYRAKSMGCGYFVFYE 488

Query: 260 DIENNTC 266
              +   
Sbjct: 489 PGMDMAA 495


>gi|66046882|ref|YP_236723.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63257589|gb|AAY38685.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 308

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 8/170 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y   +Q +  D L+   N  A    L         + + LS++  DID+FK++ND +GH 
Sbjct: 140 YRIATQTALRDPLTSTGNRIAMDQGLAREIEISRRHKQPLSLLMLDIDHFKKVNDEYGHH 199

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  L         V R GGEEF      +    A ++   L + + N +  
Sbjct: 200 TGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGADSAELIGQRLCQAVRNLEFR 259

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               P++ +T+S G +     E   +++ RAD ALYVAK+ GRNR+   S
Sbjct: 260 -ELSPALTMTVSLGCSTLLPTETADSLLRRADNALYVAKREGRNRIAMAS 308


>gi|332140385|ref|YP_004426123.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550407|gb|AEA97125.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 518

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 57/193 (29%), Positives = 84/193 (43%), Gaps = 14/193 (7%)

Query: 77  TISLLLGYISGSI--LKELFISYNR-ISQLS---RIDCLSGLLNHSAFISSLGSY----- 125
            I  LL  +   I  L++    Y + +++ +   R D L+ L N  A+   L +      
Sbjct: 320 AIMALLSSMQSRIDTLQQQTSVYKKKLAEQAMQSRTDPLTRLPNRQAYNERLETAYTRFK 379

Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                L++   DID+FK IND FGH  GDK +  +S  L        FV R GGEEF   
Sbjct: 380 SNGHSLAVAVVDIDHFKSINDRFGHATGDKTLQVVSKFLKQSLSENDFVARWGGEEFVML 439

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              +   +     N++R  +            + IT S G       +   ++  RAD+ 
Sbjct: 440 LPDAEMADIDKKLNEVRTKLAAMPFKFKQ-EKVKITASFGATCFGQDDTTESVFERADEY 498

Query: 244 LYVAKKSGRNRVV 256
           LY AK+SGRN VV
Sbjct: 499 LYKAKRSGRNLVV 511


>gi|87307282|ref|ZP_01089427.1| hypothetical protein DSM3645_17205 [Blastopirellula marina DSM
           3645]
 gi|87290022|gb|EAQ81911.1| hypothetical protein DSM3645_17205 [Blastopirellula marina DSM
           3645]
          Length = 336

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 25/185 (13%)

Query: 86  SGSILKELFISYNRISQLS---------RIDCLSGLLNHSAFISSLG-------SYNEKL 129
           +  +  ++  +Y+ I Q +         R D L+GL N  A   SL         Y+   
Sbjct: 104 TMRLSSQIANAYDEIRQQANLLMTFTESRTDPLTGLSNRRALDDSLENMIGMKSRYDFTF 163

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           ++  FD+D+FK++ND  GH  GD+V+  +S+ +         V R GGEEF      +  
Sbjct: 164 TLCIFDVDHFKRVNDQHGHLHGDRVLVEVSNLIDNCVRETDIVTRYGGEEFVVLMPSTDV 223

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
             A I A  LR   E           + +TIS G+A+   ++   T++ RAD ALY AK 
Sbjct: 224 YGACIFAERLRTSAEA---------QLGVTISGGLAQVRREDEARTLLARADAALYRAKA 274

Query: 250 SGRNR 254
           +GRN 
Sbjct: 275 NGRNC 279


>gi|238788547|ref|ZP_04632340.1| Diguanylate cyclase [Yersinia frederiksenii ATCC 33641]
 gi|238723460|gb|EEQ15107.1| Diguanylate cyclase [Yersinia frederiksenii ATCC 33641]
          Length = 378

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 111/246 (45%), Gaps = 8/246 (3%)

Query: 21  SFSPHTFM-IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS 79
           +F P  F  ++ S    IF  T+I IA   +    L     L +  V    L+ +   + 
Sbjct: 119 AFIPLLFSKVWESKNSRIFYMTIILIAIYRMIAAYLLVPQSLTWAQVMVYQLISV---LC 175

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDI 136
           L + Y + +  +    +Y  +     ID L+ L N ++    L +     +   ++  D+
Sbjct: 176 LSICYHALNFKERHIYAYFSMKSRVNIDKLTQLNNRASVDYRLKAIHNRRQACGLMILDL 235

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK +ND +GH  GD ++  +   L+       FVGR GGEEF         Q   ++A
Sbjct: 236 DHFKSVNDTYGHNGGDVLLTAVGKLLMTTVRDEDFVGRYGGEEFIIITHRHEPQAIKVVA 295

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +R+ +E+  + +  G  I +TIS G +       +   +   D+ALY AK  GRN+VV
Sbjct: 296 ERIRQRVEDLTVEVPDGRKIKVTISIGASLYLPGMSMLKALKMTDEALYQAKNQGRNQVV 355

Query: 257 CFSDIE 262
            +S + 
Sbjct: 356 -YSRLM 360


>gi|313681787|ref|YP_004059525.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313154647|gb|ADR33325.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 612

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 83/179 (46%), Gaps = 9/179 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           E     +++   S  D  +GL N       +   +E+        +++  DIDYFK +ND
Sbjct: 428 ESRSLMDKLRDSSLRDGATGLYNRRFLEEFIDKSSEQAARSHITYAVLMIDIDYFKMVND 487

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD VI  LS+ LV          R GGEEF      ++ + A  +A  +R +  
Sbjct: 488 TYGHDAGDVVIKSLSEILVQSIRKADLPVRYGGEEFLVLLHNTTPEGALGVAEKIRTVFN 547

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           + +    +  SI  T+S GIA      + I  +I  AD ALY  K +GRNRV+ F D  
Sbjct: 548 DKKFQFGND-SIQKTLSIGIAHFPTQADSIWKVIKFADIALYEGKHTGRNRVIEFEDRM 605


>gi|306841742|ref|ZP_07474428.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2]
 gi|306288147|gb|EFM59534.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2]
          Length = 461

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 82/174 (47%), Gaps = 9/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L  S  R    S  D L+GL N           ++      + LSI+  D+D+FKQ+N+ 
Sbjct: 285 LRQSMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQ 344

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD V+   S +L         + R GGEEF      +  Q A  +A  +R I+  
Sbjct: 345 YGHGAGDHVLREFSARLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRGIVAE 404

Query: 206 SQINISSGP-SIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   + +G     +T+S GI A R   + +  +  RA  AL  AK+SGRNR+V 
Sbjct: 405 APFVLDNGKRRASLTVSVGIAALRLAGDSLEALFTRATDALIQAKQSGRNRIVL 458


>gi|302671039|ref|YP_003830999.1| GGDEF domain-containing protein [Butyrivibrio proteoclasticus B316]
 gi|302395512|gb|ADL34417.1| GGDEF domain-containing protein [Butyrivibrio proteoclasticus B316]
          Length = 597

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 11/172 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           EL      + +++  D L+ + N        +  +S       + SI+F DID+FK +ND
Sbjct: 428 ELDSMNKELGKIAYTDQLTRIYNRWELENKVNEILSECNEGGNRASIIFMDIDHFKHVND 487

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGD V+    D +          GR GGEEF      +   EA   A +LRK I+
Sbjct: 488 TYGHDVGDMVLRASVDIIRDNLEAQHVFGRWGGEEFIYVLPDTGIDEAVEFAENLRKQIQ 547

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++          HIT+S G+ +    + + T + RAD  LY AK+ GRNRVV
Sbjct: 548 DNCFVTVQ----HITMSFGVTQNIAGDTLETFVKRADDGLYKAKEGGRNRVV 595


>gi|229526510|ref|ZP_04415914.1| sensory box/GGDEF family protein [Vibrio cholerae bv. albensis
           VL426]
 gi|229336668|gb|EEO01686.1| sensory box/GGDEF family protein [Vibrio cholerae bv. albensis
           VL426]
          Length = 321

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 11/180 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            + + ++     ++ QL+  D L+ L N            +      + LS +  DID F
Sbjct: 140 STDITDIVELREQLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNF 199

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND FGH  GD+V+ FL+     V     F GR+GGEEF      +  + A  LA  +
Sbjct: 200 KLINDQFGHDKGDEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQI 259

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           R+          +    HI + AG++   H +  I+ I  R+DQALY AK++GRNR   +
Sbjct: 260 RQRFAEHPFFEQNE---HIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 316


>gi|228906375|ref|ZP_04070259.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200]
 gi|228853287|gb|EEM98060.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200]
          Length = 569

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 6/174 (3%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGH 148
            L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  GH
Sbjct: 136 RLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLGH 195

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD +++ ++ +L  V G    + RLGG+EF        + + + LA  +    +    
Sbjct: 196 MIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQA--P 253

Query: 209 NISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            I  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 254 FILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 307


>gi|221369404|ref|YP_002520500.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodobacter sphaeroides KD131]
 gi|221162456|gb|ACM03427.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodobacter sphaeroides KD131]
          Length = 881

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 14/219 (6%)

Query: 56  TPFYGLEYILVE-NLSLVIISITISLL-------LGYISGSILKELFISYNRISQLSRID 107
            P + L Y +   +    I+SI  + L          IS + +     S  R+ + +  D
Sbjct: 401 APLHDLRYAIRRPDGQFGILSINAAPLPQAADEARIVISVTDITHAEASAERLRRQAAED 460

Query: 108 CLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
            L+GL N  A   ++ +        ++V  D+D FK +ND   H  GD V+   +D+L  
Sbjct: 461 PLTGLANRRALADAVETRLTEAAPFALVMLDLDNFKAVNDLQRHDTGDAVLRIAADRLRA 520

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           V G    V R+GG+EF   A G+    A  LA  LR  I ++ I +   P +H+  SAGI
Sbjct: 521 VAGADCLVARMGGDEFMVLAPGTDAASAPRLAEALRAAI-SAPIEVGRQP-VHLAASAGI 578

Query: 225 AERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           A    H   ++ ++  AD AL+ AK++GRNR V  S  +
Sbjct: 579 ALHPEHGTSMALLMTGADIALHAAKRAGRNRSVLLSQAQ 617


>gi|188592140|ref|YP_001796738.1| diguanylate cyclase (ggdef) domain [Cupriavidus taiwanensis LMG
           19424]
 gi|170938514|emb|CAP63501.1| putative diguanylate cyclase (GGDEF) domain [Cupriavidus
           taiwanensis LMG 19424]
          Length = 583

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 65/233 (27%), Positives = 105/233 (45%), Gaps = 18/233 (7%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISL-LLGYISGSILKELFISY----NR 99
           + N  L  +   P   L       LS VI +   +L +L   + +++  LF  Y      
Sbjct: 337 LRNGGLAMVDEIPVNQLWLAGAARLSGVIGAGAAALGILLCATLAVVHSLFRHYLARGEA 396

Query: 100 ISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+GL N         A  +   +    +++V  DID+FK IND +GH  GD
Sbjct: 397 LRTLAETDALTGLANRRVFAARFAAEAARCAAEQRPIAVVMLDIDHFKAINDRWGHASGD 456

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L           RLGGEEFA    G+   +AA +A +LR+ +E  + + ++
Sbjct: 457 VVLRAVAAALRSGVRKDDLPARLGGEEFAVLLPGTGVDDAAAVAGNLRQRLERLRCDPAA 516

Query: 213 G----PSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFS 259
                  +  T S G+A         +  ++  AD+ LY AK +GRN+VV   
Sbjct: 517 DALCNEPMRFTASFGVAGSAPGVPGSLDALLMAADRRLYAAKANGRNQVVAHE 569


>gi|127512396|ref|YP_001093593.1| diguanylate cyclase [Shewanella loihica PV-4]
 gi|126637691|gb|ABO23334.1| diguanylate cyclase [Shewanella loihica PV-4]
          Length = 722

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 10/176 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144
           EL  +  ++  L+  D L+ L N     +  G+ ++        L+    DID+FK+IND
Sbjct: 537 ELEDANLKLQALAERDELTQLYNRRYVENHFGNIHDMCKRSYAALAFCIIDIDHFKKIND 596

Query: 145 NFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH +GD  +  L++ +   F      V R GGEEF       +  +     N  ++++
Sbjct: 597 TYGHQIGDSALIALAELMKQFFKRDTDIVSRYGGEEFLVVLPQCNALQVEQHLNQFKELV 656

Query: 204 ENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              QI +    +I +T+S G  I+   +   I      AD  LY AK++GRNRV+C
Sbjct: 657 AEHQIEVPGQAAISLTVSIGAVISNAGYMNDIDHWFKMADLNLYEAKENGRNRVIC 712


>gi|332992261|gb|AEF02316.1| diguanylate cyclase/phosphodiesterase [Alteromonas sp. SN2]
          Length = 674

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 86/192 (44%), Gaps = 12/192 (6%)

Query: 77  TISLLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK 128
           TISL    +  ++ +   EL  +   +   +  D LSGL N       +      S    
Sbjct: 203 TISLRDNLLESTVQQRTGELKKANIELRDQAYKDSLSGLPNRRYIYELINEVSKNSETHT 262

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            S++F D+D FK++ND  GH  GD +I   + ++  +      + RLGG+EF        
Sbjct: 263 FSLLFLDLDGFKEVNDTLGHDYGDLLIVDAAKRIQAIINKGDTLARLGGDEFTIFLENVV 322

Query: 189 EQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYV 246
           E      +AN +R   E ++  +    S+HIT S G +      +    I+ +AD A+Y 
Sbjct: 323 EPCVIESIANRIR--YEFNKPFLIRDESVHITASIGASSYPECGKSAEEIMKKADLAMYD 380

Query: 247 AKKSGRNRVVCF 258
           AK SGRN    F
Sbjct: 381 AKSSGRNCYRFF 392


>gi|328470673|gb|EGF41584.1| hypothetical protein VP10329_07732 [Vibrio parahaemolyticus 10329]
          Length = 652

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 87/179 (48%), Gaps = 12/179 (6%)

Query: 89  ILKEL--FISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
           IL +L       R+  L+  D L+GL N S F   L           ++ ++++ D+D F
Sbjct: 467 ILTDLSNAKEMERLEYLAHHDALTGLANRSKFHLELEDLVQRSGYQRDEFAVLYLDLDGF 526

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND +GH  GD+V+  ++D+L         + RL G+EF      ++++    +A  L
Sbjct: 527 KEINDTYGHDAGDEVLKRVADRLTSATRHSDLIARLSGDEFVMLVNPANQKVVTRIAEQL 586

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            + I  + I    G  + + +S G+      E   + I+  AD A+Y AKK+G+ + + 
Sbjct: 587 LENI-CAPIEYK-GNELKVGVSIGVKLVGVNERDATRILKSADTAMYQAKKAGKGQAIL 643


>gi|300783187|ref|YP_003763478.1| diguanylate cyclase [Amycolatopsis mediterranei U32]
 gi|299792701|gb|ADJ43076.1| diguanylate cyclase [Amycolatopsis mediterranei U32]
          Length = 412

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 9/173 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++   +  D  +GL N S +       +++         ++  D+D+FKQ+ND +GH  
Sbjct: 239 KQLEVAAHRDEKTGLYNTSGWHALAERTLAATARARGTFGLLMLDLDHFKQVNDTYGHLA 298

Query: 151 GDKVIAFLSD-QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD V+  ++   +  V G    VGR GGEEF     G ++ +   +A  +R+ I   ++ 
Sbjct: 299 GDAVLKAVAQSIISAVRGRGDAVGRFGGEEFVVLLPGITQPDIGAVAERIRRAISALRVP 358

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                   +++S GIA        +  ++  AD ALY AK +GRN+VV  +D+
Sbjct: 359 AGQLSITGLSVSIGIAVYPTAGASLQRLLDAADTALYHAKATGRNKVVHVADL 411


>gi|227822088|ref|YP_002826059.1| GGDEF family protein [Sinorhizobium fredii NGR234]
 gi|227341088|gb|ACP25306.1| GGDEF family protein [Sinorhizobium fredii NGR234]
          Length = 398

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 75/248 (30%), Positives = 115/248 (46%), Gaps = 16/248 (6%)

Query: 18  NLESFSPHTFMI-YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILV-ENLSLVIIS 75
             E  SP  +++    +  SI+    I+ A           +    + L+ + L  ++I 
Sbjct: 141 RSERRSPADWILCGLLVLTSIYHLAKIYAAVAAGAGTTAPDYLASPFALISQALGAMLIV 200

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKL 129
            T   +LG +   I+ E   S       S +D LSGL N   F+  L         +   
Sbjct: 201 ATGIAMLGVMVKDIIDEARAS-------SELDALSGLYNRRGFVDRLTPVLETAGADGPG 253

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  D+D FK +ND +GH  GD VI   S  LV +  +     RLGGEEFA        
Sbjct: 254 TLILADLDRFKLVNDTYGHHAGDGVIRQFSRVLVELMPSRAVAARLGGEEFAVFLPRLGL 313

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            EA +LA+ +R  + +++I+     S+ IT S G+A    +E +   + RAD+ALY AK 
Sbjct: 314 SEARVLAHGMRAALASTRIDGLPD-SVKITASFGVASIGPRESLEAAMQRADKALYAAKA 372

Query: 250 SGRNRVVC 257
            GRNRV C
Sbjct: 373 DGRNRVEC 380


>gi|209544833|ref|YP_002277062.1| diguanylate cyclase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532510|gb|ACI52447.1| diguanylate cyclase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 632

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 7/179 (3%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI------SSLGSYNEKLSIVFFDIDY 138
           I  + L+E       + + +  D L+ LLN  A          +   +E+  ++  DID+
Sbjct: 375 ILDARLRERAAQTQALKRQAETDELTQLLNRRALQILAKPRLEISEADERAFLILLDIDH 434

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND  GH  GD+V+  ++  L         V R GGEEFA      ++  A  +A+ 
Sbjct: 435 FKSINDRHGHTEGDRVLVAVAAALREQVRPDDLVARFGGEEFAILIRAHTQMTALSMAHR 494

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           LR+ + + ++  +    I +T S G+A          ++ +AD ALY AK++GRN V  
Sbjct: 495 LRRRLGSLKVISAQNVRIPVTASFGVA-AGDNLTWRQLVAKADVALYAAKRAGRNTVRL 552


>gi|33415352|gb|AAQ18204.1| hypothetical protein csv014 [uncultured bacterium]
          Length = 584

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 8/175 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHS----AFI---SSLGSYNEKLSIVFFDIDYFKQI 142
           ++ L     ++S     D L+ + N      AF    + L      L+I   D+D FK++
Sbjct: 410 VRSLEDEIRKLSDEVSTDPLTQIANRRGMAKAFEVERARLQRSGGVLAIGLLDVDNFKKL 469

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD  + FLS ++         + R GGEEF      +   EA  +   L++ 
Sbjct: 470 NDTLGHHTGDLALQFLSRRVGECLRPSDSLARYGGEEFVVLLPDTPVDEAQQVLTRLQRT 529

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +++        + IT SAG+ +    E I   + RAD ALY AK++G+NR   
Sbjct: 530 L-SAEFFTQDENKVFITFSAGVTQYRADEAIEAALDRADVALYEAKQTGKNRTCV 583


>gi|49477748|ref|YP_036640.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49329304|gb|AAT59950.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 912

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 93/200 (46%), Gaps = 10/200 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           +++V I I       Y+    +  +    ++I+ L+  D ++ + N   F   L    E+
Sbjct: 450 VTIVPIMIEGQTFGSYVMVKDITRMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIER 509

Query: 129 -------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                    +++ D++ FK IND  GH +GD V+  ++ +        + + R+GG+EFA
Sbjct: 510 AQKTQGEFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSISLARIGGDEFA 569

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRA 240
                 +E +   L   L +I E  +  + +  S ++++S GIA         +T++  A
Sbjct: 570 VLVHNHTEHQLMNLCETLFRITE--EPFVVNQHSFYLSLSIGIAMYPFGGINTTTLLQHA 627

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D A+Y AK+ G N V  + +
Sbjct: 628 DIAMYSAKEKGNNAVCMYDE 647


>gi|260902134|ref|ZP_05910529.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|308109945|gb|EFO47485.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 652

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 87/179 (48%), Gaps = 12/179 (6%)

Query: 89  ILKEL--FISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
           IL +L       R+  L+  D L+GL N S F   L           ++ ++++ D+D F
Sbjct: 467 ILTDLSNAKEMERLEYLAHHDALTGLANRSKFHLELEDLVQRSGYQRDEFAVLYLDLDGF 526

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND +GH  GD+V+  ++D+L         + RL G+EF      ++++    +A  L
Sbjct: 527 KEINDTYGHDAGDEVLKRVADRLTSATRHSDLIARLSGDEFVMLVNPANQKVVTRIAEQL 586

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            + I  + I    G  + + +S G+      E   + I+  AD A+Y AKK+G+ + + 
Sbjct: 587 LESI-CAPIEYK-GNELKVGVSIGVKLVGVNERDATRILKSADTAMYQAKKAGKGQAIL 643


>gi|239826223|ref|YP_002948847.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. WCH70]
 gi|239806516|gb|ACS23581.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. WCH70]
          Length = 951

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 11/190 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDI 136
           Y  G  + E   +  +IS L+  D  + L N + F+             N KL++VF D+
Sbjct: 504 YGIGRDITEQKKAEEKISYLAYYDPDTHLPNRTKFMEIIDEQLEKAKQKNRKLAVVFIDL 563

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FK +ND+ GH  GD+++  +  ++  V     ++GR  G++F       +  +     
Sbjct: 564 DRFKLVNDSIGHYAGDEILKQVVQRIQHVLPAGAYLGRFHGDKFCLLLTERTDSEGVFKT 623

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           A  + K  E  +  +       ITIS GI+   +      +++  AD AL  AK+SG NR
Sbjct: 624 AAHISK--EVMKPIVYENKEFFITISIGISFYPNDGVDKHSLLKNADIALNKAKQSGGNR 681

Query: 255 VVCFSDIENN 264
           +  +S   N 
Sbjct: 682 IQFYSAKMNE 691


>gi|134095859|ref|YP_001100934.1| hypothetical protein HEAR2691 [Herminiimonas arsenicoxydans]
          Length = 280

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 11/176 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           +L      +  LS  D L+G+ N   F S + +        ++ LS++  DIDYFKQ ND
Sbjct: 102 KLIDLQKELETLSFKDGLTGVANRRMFDSIMAAEWANAKLNHQPLSVIMLDIDYFKQYND 161

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           ++GH  GD  +  +++ L         F  R GGEEF      + E  A  +A   R +I
Sbjct: 162 HYGHIQGDDCLKRVANILSSATRRSRDFFARFGGEEFILVLPETDELNAINIAERCRTLI 221

Query: 204 ENSQINISSGPSIH-ITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              +I       I  IT+S G+       K+     I   D+ LY AK+ GRN + 
Sbjct: 222 CKEKIPHEKSEVIPMITVSLGVGTVIPTDKDDPIRFIEEVDKRLYQAKQRGRNCIA 277


>gi|94496634|ref|ZP_01303210.1| diguanylate cyclase [Sphingomonas sp. SKA58]
 gi|94423994|gb|EAT09019.1| diguanylate cyclase [Sphingomonas sp. SKA58]
          Length = 389

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 62/181 (34%), Positives = 93/181 (51%), Gaps = 9/181 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           + L  S     + +  D L+GL N  AF + L        + +E LSI F DID+FK IN
Sbjct: 209 QALKSSLETARRAAEQDHLTGLPNRRAFEARLRDEVAEAQAADESLSIAFCDIDHFKVIN 268

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+V+ F++  L  V      V R GGEEF     G +  E     +D+R+ +
Sbjct: 269 DTHGHDTGDRVLKFVAGLLAKVSDDRCHVARHGGEEFVMLFRGKTAAETCEAVDDVREDL 328

Query: 204 E-NSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              S +N ++G  +  ++ SAG+A     +     +  AD+ALY+AK+ GRNRV   ++ 
Sbjct: 329 ASRSLVNRTNGERMDRVSFSAGVANVLAYDDPRAALKAADRALYLAKEHGRNRVYLAAET 388

Query: 262 E 262
           E
Sbjct: 389 E 389


>gi|16801092|ref|NP_471360.1| hypothetical protein lin2026 [Listeria innocua Clip11262]
 gi|16414527|emb|CAC97256.1| lin2026 [Listeria innocua Clip11262]
          Length = 375

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 110/236 (46%), Gaps = 11/236 (4%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           FS FIA +I      L+Y       G     VE +   ++    +LL+ Y    I K   
Sbjct: 140 FSKFIALIILNFPAILYYFVNNFDEGRILRGVEIVEYFLLFFVTALLVFYACNYIDKSNL 199

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
           +  N +++ +  D L+ L N   F               + LS+   DID+FK+IND  G
Sbjct: 200 VIQN-LTETAMTDSLTNLPNMRFFTQQFAWIFNKSQKRKKALSLFIIDIDHFKEINDFHG 258

Query: 148 HPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  G+ V+A  S  L    F       R+GGEEFA        ++AA++A+ LR  IE +
Sbjct: 259 HQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTEQAALIADFLRDEIERA 318

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +    +  S ++T+S G+A   +      ++   ADQALY AK++GRN++    + 
Sbjct: 319 KFPY-NPVSGNVTVSIGVASMGYNYRTTESLFEAADQALYQAKQNGRNQIAIHQEE 373


>gi|323164464|gb|EFZ50266.1| diguanylate cyclase domain protein [Shigella sonnei 53G]
          Length = 313

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 134 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 191

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 192 EINDTWGHNTGDEILRKVSQAFYDNVHSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 251

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 252 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 309


>gi|315125368|ref|YP_004067371.1| GGDEF domain protein [Pseudoalteromonas sp. SM9913]
 gi|315013881|gb|ADT67219.1| putative GGDEF domain protein [Pseudoalteromonas sp. SM9913]
          Length = 854

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 12/182 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQ 141
           + E      ++   +  D L+ L N + F++ L           +E  +++F D+D FK 
Sbjct: 424 IDERKKIEQQLYHDAHHDSLTSLPNRNLFLTQLEKTLQFYQRHPDEHFAVLFIDLDKFKD 483

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLR 200
           IND  GH  GD+ +  +             + RLGG+EF       +E  +A  +AN + 
Sbjct: 484 INDQLGHHAGDEFLISVGQLFSQCIREHDLLARLGGDEFVILLTHLTEPNQAEDVANRII 543

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I+   +   + G  +    S GI       +    II  AD A+Y AK SG+NR   F 
Sbjct: 544 NIMR--KPFCTKGICVQSGASIGITYSKQSYKHTDEIIRDADAAMYYAKNSGKNRFELFH 601

Query: 260 DI 261
            +
Sbjct: 602 PL 603


>gi|294498251|ref|YP_003561951.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Bacillus megaterium QM B1551]
 gi|294348188|gb|ADE68517.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Bacillus
           megaterium QM B1551]
          Length = 922

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 50/217 (23%), Positives = 92/217 (42%), Gaps = 11/217 (5%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L  F  L   L   +   +I I    L   ++   + E   +   +  ++  D L+ L N
Sbjct: 442 LKMFNALGKELFLEVKSTLIQINGETLFQTVT-RDVTEQKKAQESLQYMAFHDMLTDLPN 500

Query: 115 HSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
            S F       I S  +  +KL  +F D+D FKQ+ND  GH  GD+++  + D++     
Sbjct: 501 RSMFSSIVEKSIDSAATSGKKLHFLFLDLDRFKQVNDTLGHHAGDQLMLQVVDRMKSCLR 560

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
               + R GG+EF       +++E   +   L   +  S   +     +++ +S G++  
Sbjct: 561 NQDVLSRFGGDEFLVLLHDRTDEEVKKICQSLNDCL--STPFVVLSRDVYLGVSIGVSLF 618

Query: 228 C-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
               + +  ++  AD A+Y  KK GRN  + +     
Sbjct: 619 PKDGKLLEVLVRHADLAMYEVKKQGRNHYLFYQKEMQ 655


>gi|163752369|ref|ZP_02159564.1| GGDEF domain protein [Shewanella benthica KT99]
 gi|161327741|gb|EDP98928.1| GGDEF domain protein [Shewanella benthica KT99]
          Length = 681

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139
             IL +   + +++ +++  D L+GL N +  +           ++ ++  ++F D+D F
Sbjct: 235 NQILIQFGQTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRARAHKQQFCMLFIDLDRF 294

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND+ GH +GD+ +  ++  L  V      V RLGG+EF   A    S  +AA     
Sbjct: 295 KNINDSLGHAIGDQFLTRIARVLERVVADKGTVARLGGDEFVILADEIRSPDQAADFVEH 354

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           +  + + +     +  +IH   S GI+           ++  AD A+Y AK +G N+   
Sbjct: 355 M--LFQLNTPMQLNDHTIHPAASVGISIYPDDGMSAEDLLRHADIAMYSAKAAGSNQWAF 412

Query: 258 FSDIENNTC 266
           F        
Sbjct: 413 FKQQMTERA 421


>gi|170727199|ref|YP_001761225.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella woodyi ATCC 51908]
 gi|169812546|gb|ACA87130.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella woodyi ATCC 51908]
          Length = 415

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 9/167 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ + + +D L+G+ N   F       +  +      L++   DID+FK++ND +GH +
Sbjct: 247 RKLWEQANLDYLTGVYNRRYFFNLFEEQLQQIEQKKTSLTLALLDIDFFKKVNDTYGHDI 306

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+   + +L   FG    V R GGEEF  A  G +E +   L +  R  +E   I  
Sbjct: 307 GDEVLVEFAARLKHFFGQHFTVARFGGEEFTVAFRGLNEDKVFSLMDKFRAQLEVEAIQT 366

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S GP I++T+S GIA     E +  ++ RAD+ALY AK+ GRN V  
Sbjct: 367 SQGP-INVTVSTGIAGLS-DESLDNLLQRADKALYDAKELGRNLVCI 411


>gi|114776516|ref|ZP_01451561.1| Hypothetical 918 kDa protein Y4LL [Mariprofundus ferrooxydans PV-1]
 gi|114553346|gb|EAU55744.1| Hypothetical 918 kDa protein Y4LL [Mariprofundus ferrooxydans PV-1]
          Length = 702

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 12/205 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +  E LS+  +      +  Y+S  + + E      R+S ++  D L+GL N + FI  L
Sbjct: 490 VYPERLSISAVCNDAGEITNYVSIFNDISEQKDIELRLSHMAHHDQLTGLPNRTLFIDRL 549

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                      +K+ ++F DID FK +NDN GH VGD ++  +++ L  +      V R+
Sbjct: 550 EHALAHASRNKDKVGLMFIDIDGFKAVNDNHGHDVGDALLCIIANSLTELVRDADTVARI 609

Query: 176 GGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI- 233
           GG+EF           A I +A  +      S   +++G +  I  S GI          
Sbjct: 610 GGDEFVIILEKLLSDTAIIQVAEKILNRF--SVPTLAAGIACDIGCSIGITIGSDDSSSC 667

Query: 234 STIIYRADQALYVAKKSGRNRVVCF 258
           + I+ +AD A+Y+AK SG+ +   +
Sbjct: 668 NEIVKQADTAMYLAKTSGKQQYRIY 692


>gi|167648745|ref|YP_001686408.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Caulobacter sp. K31]
 gi|167351175|gb|ABZ73910.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Caulobacter sp. K31]
          Length = 807

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 12/194 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFF 134
           L  ++   L+E   +  +I  L+  D L+GL N ++  + L +         E LS++  
Sbjct: 342 LTVLAVRDLRERRSAEEKIRYLAEHDGLTGLPNRNSLQTRLAAALDRVEASGESLSLICI 401

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEA 192
           D+D+FK+ ND  GH  GD ++   + +L      P F  RLGG+EF     A G     A
Sbjct: 402 DLDHFKEANDLHGHLAGDALLVETARRLQDSVTAPSFAARLGGDEFIVVQVAAGDQPAAA 461

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSG 251
           A LA  L + +      +  G  + +  S G++           ++  AD ALY AK+SG
Sbjct: 462 AELAGHLLEALAA--PAVYEGQDLVMGASLGVSLFPDDGRTAEALLANADMALYRAKESG 519

Query: 252 RNRVVCFSDIENNT 265
           R     F    + +
Sbjct: 520 RGAYRFFKREMDES 533


>gi|296445212|ref|ZP_06887172.1| diguanylate cyclase with PAS/PAC sensor [Methylosinus trichosporium
           OB3b]
 gi|296257386|gb|EFH04453.1| diguanylate cyclase with PAS/PAC sensor [Methylosinus trichosporium
           OB3b]
          Length = 502

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 61/180 (33%), Positives = 92/180 (51%), Gaps = 9/180 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           I G  + E      R+ +L+  D L+G+ N S F       I     Y   LS++  D+D
Sbjct: 313 ICGVDISERKAVEARLHRLATTDALTGVANRSHFFARADAEIRRAARYRRPLSVLMVDLD 372

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK++ND  GH VGD V+A  +     +      V R GGEEF A    + EQ A  + +
Sbjct: 373 HFKRVNDEHGHAVGDAVLAEFAGLCARMLRAEDLVARYGGEEFVALLPETDEQGAVAVGH 432

Query: 198 DLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            LR+     +   S+G ++ +T+S G+ A    +  I   + RAD+ALY AK +GR+RVV
Sbjct: 433 RLREGAMQIRTP-SAGSALRLTVSIGVSAVLAGEAAIEAALARADEALYQAKAAGRDRVV 491


>gi|226304926|ref|YP_002764884.1| hypothetical protein RER_14370 [Rhodococcus erythropolis PR4]
 gi|226184041|dbj|BAH32145.1| hypothetical membrane protein [Rhodococcus erythropolis PR4]
          Length = 501

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 71/257 (27%), Positives = 123/257 (47%), Gaps = 20/257 (7%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           I L  E  +    P   +++ +   S+   +  F++ ++  +  +    G   I  +  S
Sbjct: 203 IALSIEGPIALVLPIPALLWCATRISV--PSTAFVSVVWSVWSLMMAGSGRLDIGDQAAS 260

Query: 71  L----VIISITISLL-LGYISGSILKELFISYNRISQLS-RIDCLSGLLNHSAFI----- 119
                VI SI ++L+ LG I+ +   E   +  R   L+   D L+G+L+  AF+     
Sbjct: 261 TWNEDVITSIAVTLIALGPIAVACATEERRAAERELFLAVEFDHLTGVLSRGAFLGHAES 320

Query: 120 --SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
             ++       + ++  D+D+FK IND  GH  GD V+A  +++          +GRLGG
Sbjct: 321 ELAAAARTQSPVGLLMLDLDHFKSINDTHGHMTGDSVLANFAERAADRLSDGDLIGRLGG 380

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTI 236
           EEFA      S   A  +A  +R     +Q+  S+   +  T+S G+A   H  P ++T+
Sbjct: 381 EEFAILLPDCSYARAVDVAEAVR----GAQVEYSAESEVTSTVSVGVAWVDHATPTLTTL 436

Query: 237 IYRADQALYVAKKSGRN 253
           +  AD+ALY AK++GRN
Sbjct: 437 MSVADEALYEAKRAGRN 453


>gi|115372346|ref|ZP_01459655.1| ggdef family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115370559|gb|EAU69485.1| ggdef family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 237

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 58/168 (34%), Positives = 83/168 (49%), Gaps = 9/168 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           +  I  L+  D L+G+ N   F+  L         Y+  LS++ FDID+FK+IND  GH 
Sbjct: 70  HETIYTLTIADGLTGVSNKRYFLEYLEREMGRSHRYHRALSLMIFDIDHFKKINDVHGHL 129

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  L+  +  +        R GGEEFA        ++A + A  +RK+IE     
Sbjct: 130 AGDHVLRELAQSVKRLVRREQCFARYGGEEFALVMPEDGPEKARLFAEKIRKLIEERTFM 189

Query: 210 ISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256
                 I +TIS G+A+        +  I  +D  LY AKK+GRNRVV
Sbjct: 190 FED-KEIPVTISIGVADMTADMTEPTQFIKVSDANLYRAKKAGRNRVV 236


>gi|114799344|ref|YP_759497.1| putative diguanylate cyclase [Hyphomonas neptunium ATCC 15444]
 gi|114739518|gb|ABI77643.1| putative diguanylate cyclase [Hyphomonas neptunium ATCC 15444]
          Length = 327

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 56/181 (30%), Positives = 82/181 (45%), Gaps = 9/181 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           S S++  L    + +   S  D L+ + N  AF  +L          +E L +   D+D+
Sbjct: 143 SQSLISTLSEQLDEVRTQSLRDPLTAIPNRRAFDKTLEEAMDHAARTHEPLCVAMADLDH 202

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND FGHP GD V+   +  +      P  V R GGEEFA    GS    A     +
Sbjct: 203 FKALNDTFGHPAGDVVLQNFARLISGSANEPRLVARYGGEEFAIIFPGSDLMAAYNRLVN 262

Query: 199 LRKIIEN--SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           ++  +     +   S GP   +T S G+A+         +I +AD +LY AK  GRNRV 
Sbjct: 263 IKHTLSKTVHEAEGSVGPLPAVTASFGVAKYQPGMTARELIQKADASLYDAKAKGRNRVC 322

Query: 257 C 257
            
Sbjct: 323 A 323


>gi|90411738|ref|ZP_01219747.1| hypothetical protein P3TCK_17832 [Photobacterium profundum 3TCK]
 gi|90327300|gb|EAS43664.1| hypothetical protein P3TCK_17832 [Photobacterium profundum 3TCK]
          Length = 395

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 109/249 (43%), Gaps = 13/249 (5%)

Query: 17  KNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISI 76
             + +  P   +   +I    F  ++  ++   +  I  T +Y       E L++  +  
Sbjct: 130 GYIYTLLPIIHVAILTILPITFKESLSLLSITAITQIC-TDYYAGRLFAPEYLAIYWLQS 188

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKL 129
            ++L++ +   S L  L     R+ + + +D L+G+ N    +              E  
Sbjct: 189 VLALMVIWSQVSKLHMLM----RLYRQAILDPLTGIYNRRMLLQLGKKNMLECELKGEPF 244

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++ FDID FK+IND +GH VGDKV+   +  +          GR GGEEF         
Sbjct: 245 SVLLFDIDKFKRINDTWGHSVGDKVLTGFTSFVQSKIRKTDLFGRYGGEEFVLFLPDCPP 304

Query: 190 QEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
             A  ++N +   I + ++ I+    S+ IT   GI+     + +++++ RAD ALY  K
Sbjct: 305 DTAIKISNRMLIAIRDLKLPINIDNQSLSITTCIGISTYSENDTLASMLERADLALYKCK 364

Query: 249 KSGRNRVVC 257
            SGR+    
Sbjct: 365 HSGRDCSHF 373


>gi|222102417|ref|YP_002539456.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221739018|gb|ACM39751.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 568

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 9/180 (5%)

Query: 86  SGSILKELFISYNR---ISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYF 139
           S  I + L     +   +++ +  D L+GL N       IS + + +   ++   D+D+F
Sbjct: 375 SAEIARSLEALQQQTSVLTEAANTDPLTGLSNRRHLETIISDINTQSASYALAILDVDHF 434

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND F H +GD+V+  +   + VV        R GGEEF       +   A  ++  L
Sbjct: 435 KKINDTFSHIIGDRVLVQIGTLVKVVVRETDIAVRFGGEEFVILMTDLTLAHAERVSERL 494

Query: 200 RKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           R  I N     I+ G  +++++S G+A          ++  AD+ LY AK++GRNRVVCF
Sbjct: 495 RMTITNFDWSEIADG--LNVSVSIGVAMSDDAVDAEAVLQLADRRLYWAKQTGRNRVVCF 552


>gi|323487737|ref|ZP_08092995.1| signaling protein YkoW [Planococcus donghaensis MPA1U2]
 gi|323398471|gb|EGA91259.1| signaling protein YkoW [Planococcus donghaensis MPA1U2]
          Length = 814

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 84/182 (46%), Gaps = 8/182 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN------EKLSIVFFDIDY 138
           +    + E+  +  ++  ++  D L+ L N   F+  L           ++++ F D+D 
Sbjct: 357 VFVKDITEIAEAREKMHHMAYHDSLTLLPNRRYFVEELDRRITYSTAFSQMAVCFLDLDR 416

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILAN 197
           FK +ND  GH +GD+++  L+D+   +    + + RLGG+EF       S+ E       
Sbjct: 417 FKLVNDILGHQIGDQLLQVLADRFRSLVDKDVVISRLGGDEFTFLFPDVSDYEVFQKQLE 476

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256
           D+   I+   +  S    ++IT S GIA       +   ++  AD A+Y AK+ G+N   
Sbjct: 477 DILLQIQTPFLLGSQNQELYITGSIGIALYPEDSRVGEDLMKFADAAMYSAKEKGKNMYE 536

Query: 257 CF 258
            +
Sbjct: 537 FY 538


>gi|302189448|ref|ZP_07266121.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 523

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 99/227 (43%), Gaps = 14/227 (6%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK----ELFISYN 98
           I  A          P++      +    ++I+++    +L Y     L     EL  + N
Sbjct: 275 IVAAAGISSQHVFAPWWAYAQRSMTITGIIILALVFLGVLLYRQIQQLITAEGELNSARN 334

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151
            +  ++  D L+ L N   F ++L     +       ++I+  DID+FKQ ND +GH  G
Sbjct: 335 DLEIIAHTDSLTHLANRRCFDTALQQEWGRASRNDATIAIILLDIDWFKQYNDTYGHLQG 394

Query: 152 DKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D  +  ++  +   +  +     R GGEEF      +    A  LA  +R  IE S I  
Sbjct: 395 DDCLRQVAGLIGNSLDRSGDIAARYGGEEFVILLPETDLAGALRLAEKIRSSIEASCIEH 454

Query: 211 SSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           SS P   ++IS+G+       K   +  +  AD+ LY+AK  GRNRV
Sbjct: 455 SSSPLGRLSISSGVVAVNAAEKNRHTAALEEADRLLYLAKTKGRNRV 501


>gi|281178479|dbj|BAI54809.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 661

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|253995514|ref|YP_003047578.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera mobilis JLW8]
 gi|253982193|gb|ACT47051.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera mobilis JLW8]
          Length = 934

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 74/181 (40%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + +       + +++  D L+ L N +     L           E L++   D+D FK
Sbjct: 482 SDITQAKEQQQNLERMAYHDPLTQLPNRALLSDRLQQALARAERSGELLAVCCLDLDGFK 541

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            +ND  GH  GD ++  L+ ++         V RLGG+EFA    G  S  E       L
Sbjct: 542 PVNDTLGHEAGDYLLVQLAVRMSACLRDSDTVARLGGDEFAVLLCGLQSIDECTQTLERL 601

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
             +I+          S+ ++ S G            T++  AD A+Y AK +G +RV  F
Sbjct: 602 LSVIKT--PYSIGDKSVTVSSSIGYTIFPDDGCEPDTLLRHADHAMYQAKLNGGSRVQQF 659

Query: 259 S 259
            
Sbjct: 660 D 660


>gi|229072768|ref|ZP_04205967.1| Sensory box/GGDEF [Bacillus cereus F65185]
 gi|228710259|gb|EEL62234.1| Sensory box/GGDEF [Bacillus cereus F65185]
          Length = 885

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
           Y+    + E      +I+ L+  D L+ L N  AF   L           +  +++F D+
Sbjct: 435 YLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKPFAVMFLDL 494

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAIL 195
           D FK IND  GH VGD ++  ++ +L  +  + M + RL G+EF        ++ +   +
Sbjct: 495 DRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQKI 554

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
           A+ +   + N    I +   + I+ S GIA      E   +I+  AD A+Y AK  G+N 
Sbjct: 555 ADRIVAAM-NEPFEIENQH-LQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 612

Query: 255 VVCFS 259
              ++
Sbjct: 613 SSLYT 617


>gi|196047149|ref|ZP_03114366.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108]
 gi|196022019|gb|EDX60709.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108]
          Length = 567

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++        +  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF        + E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHKQDEMRQLATSVLSCFQA-- 250

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 251 PFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 305


>gi|28900733|ref|NP_800388.1| hypothetical protein VPA0878 [Vibrio parahaemolyticus RIMD 2210633]
 gi|260362632|ref|ZP_05775539.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
 gi|260877671|ref|ZP_05890026.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|260897186|ref|ZP_05905682.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           Peru-466]
 gi|28809179|dbj|BAC62221.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088212|gb|EFO37907.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           Peru-466]
 gi|308090696|gb|EFO40391.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|308112805|gb|EFO50345.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           K5030]
          Length = 652

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 87/179 (48%), Gaps = 12/179 (6%)

Query: 89  ILKEL--FISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
           IL +L       R+  L+  D L+GL N S F   L           ++ ++++ D+D F
Sbjct: 467 ILTDLSNAKEMERLEYLAHHDALTGLANRSKFHLELEDLVQRSGYQRDEFAVLYLDLDGF 526

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND +GH  GD+V+  ++D+L         + RL G+EF      ++++    +A  L
Sbjct: 527 KEINDTYGHDAGDEVLKRVADRLTSATRHSDLIARLSGDEFVMLVNPANQKVVTRIAEQL 586

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            + I  + I    G  + + +S G+      E   + I+  AD A+Y AKK+G+ + + 
Sbjct: 587 LESI-CAPIEYK-GNELKVGVSIGVKLVGVNERDATRILKSADTAMYQAKKAGKGQAIL 643


>gi|255522684|ref|ZP_05389921.1| GGDEF domain protein [Listeria monocytogenes FSL J1-175]
          Length = 264

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 106/232 (45%), Gaps = 11/232 (4%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           FS F+A +I      L+Y       G      E +   ++    +LL+ Y    I K   
Sbjct: 29  FSRFVALIILNFPAILYYFVNNFDEGRILQGFEIIEYFLLFFVTALLVFYACNYIDKSNL 88

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
           +  N +++ +  D L+ L N   F               + LS+   DID+FK+IND  G
Sbjct: 89  VIQN-LTETAMTDSLTNLPNMRFFTQQFGWIFAKSQKRKKSLSLFIIDIDHFKEINDFHG 147

Query: 148 HPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  G+ V+A  S  L    F       R+GGEEFA        ++AA++A+  R+ +E +
Sbjct: 148 HQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTEQAALIADFFREEVERA 207

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           +    +  S  +T+S G+A          ++   ADQALY AK++GRN++  
Sbjct: 208 KFPY-NPASGKVTVSIGVASASSNFSTTESLFEAADQALYQAKQNGRNQIAV 258


>gi|311235158|gb|ADP88012.1| diguanylate cyclase with hemerythrin-like metal-binding domain
           protein [Desulfovibrio vulgaris RCH1]
          Length = 613

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 105/243 (43%), Gaps = 20/243 (8%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI 85
             ++ F    ++FIAT   +    +      P  G   +L+ + +    S T++ L   +
Sbjct: 223 VMVVLFLTVIAVFIATAHRVGPFHM------PTQGEAVMLLVSFA---ASTTLTTLGLSL 273

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDY 138
              +L +         Q + ID L+GL N + F          L   +  LS++ FD D+
Sbjct: 274 YRHLLAQAGARATMWEQRAGIDPLTGLCNRARFDEVLLAELQRLQRQDSPLSLMMFDADH 333

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           FK  ND +GH  GD  +  ++  L  V       V R GGEEF     G+    A  LA 
Sbjct: 334 FKPYNDMYGHVAGDACLKRVAGVLRAVAHRASDVVARYGGEEFVCILPGTDRDSAYALAE 393

Query: 198 DLRKIIENSQINISSGPSIHI-TISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNR 254
            +R+ +    I     P   + T+SAG+     C       ++ + D+ALY AK +GR+R
Sbjct: 394 KVRQGVRALAIPHVGSPVAGVLTVSAGVVTVHGCDGLDPQEVVAQVDRALYQAKGAGRDR 453

Query: 255 VVC 257
           V+ 
Sbjct: 454 VMV 456


>gi|254785909|ref|YP_003073338.1| ggdef family protein [Teredinibacter turnerae T7901]
 gi|237685702|gb|ACR12966.1| ggdef family protein [Teredinibacter turnerae T7901]
          Length = 427

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 13/208 (6%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNH 115
           L  +L+     VI    +S +L  +  + L      +L     +  +LS  D L+G++N 
Sbjct: 216 LYLLLIAGWMFVIGWEAVSRILYLLHKTRLDSIALHQLREESAQYKKLSTTDALTGVINR 275

Query: 116 SAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
           +   + + +   +      ++++  DID+FK+IND+ GH VGD+++   + ++       
Sbjct: 276 AGLDAIIHALTLEPGQLCGMAVLVLDIDHFKRINDSRGHDVGDRILFEFARKIKACIRAD 335

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
               R GGEEF   A          LA  +R  +  S    S    + +T+S G A    
Sbjct: 336 DIFARWGGEEFIVLARLGDHASVQTLAEKIRTAVYQSTFEPS--HPVKLTVSIGAARITA 393

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVC 257
            E       RADQ LY AK  GRN VV 
Sbjct: 394 DEAFEQAFRRADQLLYQAKNLGRNCVVV 421


>gi|254449186|ref|ZP_05062636.1| ggdef domain protein [gamma proteobacterium HTCC5015]
 gi|198261232|gb|EDY85527.1| ggdef domain protein [gamma proteobacterium HTCC5015]
          Length = 394

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 109/252 (43%), Gaps = 25/252 (9%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILV-ENLSLVIIS------ITISLLLGY---- 84
           ++++  +    + +L + G+    G  + L+   ++L I S      I  SL L +    
Sbjct: 143 AVYLLGLFAPVSAWLLWRGVANDTGAAWFLMGYGVALWIGSARLAENIRSSLRLQFENQE 202

Query: 85  ISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFF 134
           ++GS+ +    L  +   +   S  D L+ + N   F          L      LS++  
Sbjct: 203 LAGSLKRSNNRLQEANQELKHASSTDSLTQVANRRYFEHHLEGEWQRLAREEGDLSVLMV 262

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAA 193
           D+D FK  ND  GH  GD+ +  ++  L      P   + R GGEEF      +S   A 
Sbjct: 263 DVDQFKHFNDVQGHQAGDQALVAVAGALQSALRRPADILARYGGEEFIVLLPNTSRSGAM 322

Query: 194 ILANDLRKII-ENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKS 250
            +A  +R+ +      +       H+T+S G A    KE  ++  +I  AD+ALY AKK+
Sbjct: 323 RVAQIMRERVELLELEHPELDDRQHVTVSVGGAHAMVKESATSRGLIAEADKALYQAKKN 382

Query: 251 GRNRVVCFSDIE 262
           GRN V   S  +
Sbjct: 383 GRNCVEMASSPD 394


>gi|91204236|emb|CAJ71889.1| hypothetical protein kustc1144 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 483

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
           +I  +   +Y    +++ +D L+ L     F+              E  SI+  DID+FK
Sbjct: 183 AIAIDRARNYEHAQKVAMVDELTSLYTRRYFLESSQREYRQAERRGEFFSIIMVDIDHFK 242

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
             ND +GH +GD+V+  L+  L +       + R GGEEF     G+++  A   A  LR
Sbjct: 243 YFNDTYGHLLGDEVLRKLASVLKLNARQSDVIARYGGEEFIILLPGTNKPGAVASAEKLR 302

Query: 201 KIIE-NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
             IE    I +  G    +TI+AG+A        +  +   AD+ LY+ KKSGRN++V
Sbjct: 303 SAIEKKLAIEVGGGHKEKVTITAGVACYPEDGNNVEEVTASADRFLYLGKKSGRNKIV 360


>gi|317407207|gb|EFV87193.1| hypothetical protein HMPREF0005_05644 [Achromobacter xylosoxidans
           C54]
          Length = 587

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 13/184 (7%)

Query: 86  SGSILKELFISYNRI----SQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFF 134
           + +  ++  +  +R+    + ++  D L+GLLN  AF S L     +       L+ + F
Sbjct: 399 NAAARRQAELERDRLIVDLAVMAETDFLTGLLNRRAFESRLEQALAQWRGTDAVLAFILF 458

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID FK IND  GH  GD+ +  ++      +     V R+GGEEFA      +   A  
Sbjct: 459 DIDDFKGINDTHGHASGDEALKTVAGLCRQTWRQADVVARVGGEEFAVLCHVGAADHAVQ 518

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGR 252
            A  +R+ I  +++    G    +T S G+  A   + E    +  RAD+ LY AK  G+
Sbjct: 519 AAERMRRRIAQARVTAQDGAVFTLTASFGVAYASWRNAEAADALFRRADELLYRAKMDGK 578

Query: 253 NRVV 256
           NRVV
Sbjct: 579 NRVV 582


>gi|317491881|ref|ZP_07950316.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920315|gb|EFV41639.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 388

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 90/176 (51%), Gaps = 12/176 (6%)

Query: 87  GSILKE-------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDI 136
            S+L+E       L I  +++S  +  D L+ L N S F+S L S N   E++ ++F D 
Sbjct: 208 NSLLREMELQHADLMIENDQLSYKALHDPLTSLPNRSNFMSMLESMNMMQEQICVMFLDG 267

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FK +ND +GH  GD V+  ++++L  + G    V R+GG+EF+        + +   +
Sbjct: 268 DGFKAVNDTWGHSAGDHVLTTIAERLKTLVGKNDLVARMGGDEFSILLRHVVDQDDVMQV 327

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              + K +  + I + +G  + +++S G          + ++ +AD A+Y +K +G
Sbjct: 328 IEKILKAMRRT-IYLPNGEEVFVSLSIGFTLSNAGSTPAELLEKADAAMYHSKHNG 382


>gi|307544296|ref|YP_003896775.1| diguanylate cyclase with PAS/PAC sensor [Halomonas elongata DSM
           2581]
 gi|307216320|emb|CBV41590.1| diguanylate cyclase with PAS/PAC sensor [Halomonas elongata DSM
           2581]
          Length = 687

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 10/189 (5%)

Query: 82  LGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVF 133
           LG++ +   + E           +  D L+GLLN       L               ++ 
Sbjct: 500 LGFVGTVKDITERREEEALRQWEAEHDPLTGLLNRRGLERRLEEALADWRKTGTPSVLLI 559

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           FD+D FK IND  GH +GD+++  ++  L           R GG+EFA      + + A 
Sbjct: 560 FDLDRFKPINDLGGHALGDEMLCQVARALSRTVRRSDHTARQGGDEFAVLLPSCTFERAQ 619

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGR 252
            +A  LR+ I   Q+ +  G    +T+S G+      +  I +++ RAD A Y AK+ GR
Sbjct: 620 DIAESLRETIRELQV-VHGGRVFSVTLSLGVTCFERGDQRIESVMQRADAASYRAKRMGR 678

Query: 253 NRVVCFSDI 261
           +RVV   + 
Sbjct: 679 DRVVMHGEA 687


>gi|167590663|ref|ZP_02383051.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Burkholderia ubonensis Bu]
          Length = 577

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 7/189 (3%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYF 139
            +S SI+     +  RI +L+  D L+GL N + F++     L   ++ ++++F D+D F
Sbjct: 315 MLSWSIVTRQAEAEARIHELAHHDSLTGLPNRATFLAEFDACLRRSDKVIALLFIDLDGF 374

Query: 140 KQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           K IND  GH  GD+V+  ++++L        M +GR+GG+EFA     +    A   A  
Sbjct: 375 KLINDARGHSAGDEVLRQVAERLRGQCPEPGMMLGRIGGDEFAVLMRDTDADGAMGAAAR 434

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L   +  +    S      I  S G      H      ++ RAD ALY AKK+G+     
Sbjct: 435 LVDTL-VAPYAPSPDRQFRIGASIGCVLAPHHGNDAGVLLSRADMALYAAKKAGKGTYRM 493

Query: 258 FSDIENNTC 266
           FS     + 
Sbjct: 494 FSPDMETSA 502


>gi|170723990|ref|YP_001751678.1| diguanylate cyclase [Pseudomonas putida W619]
 gi|169761993|gb|ACA75309.1| diguanylate cyclase [Pseudomonas putida W619]
          Length = 427

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 68/285 (23%), Positives = 117/285 (41%), Gaps = 37/285 (12%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL------FYIG 54
           + +S    L  WL  E    S     +M    + + +FI   + +   +L          
Sbjct: 141 LEQSFPQALLAWLA-EIRWPSLHGQ-WMSLIQMVYPLFIGVFMLLVVQYLREPRPLHAAQ 198

Query: 55  LTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           +    G+ ++L +   L   ++I  S ++  I+ ++  E +       Q++  D L+GL 
Sbjct: 199 IIGLIGIFWMLPKTFILPFTLNIMCSQVMLMIAAAVSHEAY-------QMAFRDELTGLP 251

Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              A    +        I   D+D+FK+ ND  GH VGD+V+  ++ +L  V G      
Sbjct: 252 GRRALNERMQRLGRNYVIAMTDVDHFKKFNDTHGHDVGDQVLRLVASRLSKVTGGGRAYR 311

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------------------- 214
             G EEFA    G +  E       +R++I N  + +                       
Sbjct: 312 YGG-EEFALVFAGKTADECVPHVEAVREMIANYTMQLRDQNNRPQDDSAGRQRRSGSGAG 370

Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           ++ +TIS G+AER         ++  ADQALY AK +GRN V+ +
Sbjct: 371 TVSVTISIGVAERLIEHRNPEEVLKSADQALYSAKGAGRNCVMVY 415


>gi|170723285|ref|YP_001750973.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas putida W619]
 gi|169761288|gb|ACA74604.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas putida W619]
          Length = 334

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+GL N   F   L           ++LS++  D+DYFK  N
Sbjct: 156 QQLLDTNLMLQRLMNSDGLTGLSNRRHFDEYLELEWRRAMREQQQLSLLMIDVDYFKVYN 215

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D+FGH  GD+ +  +++ +            R GGEEFA     +S   A ++A  LR+ 
Sbjct: 216 DSFGHLAGDEALRKVAEAIRGSCSRPTDLPARYGGEEFALVLPNTSPGGARLVAEKLRQT 275

Query: 203 IENSQINISSGP-SIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255
           +    I  ++      +T+S G+A +          +I  AD+ LY+AK SGRN V
Sbjct: 276 VHGLNIPHTAPQDDSRLTVSIGLATQTPAIGSHCRQLISAADKGLYLAKNSGRNTV 331


>gi|114561940|ref|YP_749453.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114333233|gb|ABI70615.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 404

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 110/290 (37%), Gaps = 62/290 (21%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           P +F +    +   FI+ + F    FL Y+       + +      +++ + +   LL  
Sbjct: 120 PFSFFLIGRTW-GTFISCICFSVCAFLVYLQTQNPQPVTFSKGSLFNVIEVCVAQILLFR 178

Query: 84  YI---SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------------- 125
           +      S  K+L +    I +++  D L+GL N      +L +                
Sbjct: 179 FYEKTRFSAYKKLALRNLEIQKMAETDKLTGLYNREKLDFALDTLLTTPAANTSMTTETT 238

Query: 126 --------------------------------------NEKLSIVFFDIDYFKQINDNFG 147
                                                    +S+   DID+FKQINDN G
Sbjct: 239 NAIKQTDEAPIIYQPYADDHPLTNHQTTQDLLSKQAVTQYPISVAIIDIDHFKQINDNHG 298

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GDKV+  L+  L         + R GGEEF      ++  +A  L   LR  I    
Sbjct: 299 HLIGDKVLCQLAQLLQNQMRNDDLLARWGGEEFVVVLPNTTLADAIELTERLRLYIAMQN 358

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I       + +TIS G+A+   ++   +++ RAD+ALY AK  GRN V  
Sbjct: 359 I-----KGMELTISLGVAQYRLEDSAHSLLDRADKALYSAKSGGRNCVAA 403


>gi|307130173|ref|YP_003882189.1| hypothetical protein Dda3937_03276 [Dickeya dadantii 3937]
 gi|306527702|gb|ADM97632.1| hypothetical protein Dda3937_03276 [Dickeya dadantii 3937]
          Length = 365

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 11/230 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITI-SLLLGYISGSILKELFI 95
           +F+  ++      L  I LT          E +   +  + I  + +G ++     +L  
Sbjct: 137 LFVQGLVAQLTGALVVIWLTHRSIAFATTPEQIYFCLPMLFIYPISVGLVTYRTAIKLAE 196

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              ++ ++S  D ++ L N   +   L         + +  ++   DID+FK+IND+FGH
Sbjct: 197 HKRQLREISIHDGMTRLYNRHYWEQLLKHEFELCLRHQQVATLALLDIDHFKRINDSFGH 256

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD VI  LS  +          GR GG+EF      +   EA  +   LR+ +E+ Q+
Sbjct: 257 HVGDDVILLLSGGIKSTLRQSDITGRFGGDEFGMVLPQTPAVEAERIVQRLREYLESIQL 316

Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           +    P++ + IS G+ +     E     +  AD ALY AK +GR   VC
Sbjct: 317 H--QAPALRVGISVGLVQFHAGMEDYQVWLKAADTALYQAKDNGRGCTVC 364


>gi|110835028|ref|YP_693887.1| GGDEF domain-containing protein [Alcanivorax borkumensis SK2]
 gi|110648139|emb|CAL17615.1| GGDEF domain protein [Alcanivorax borkumensis SK2]
          Length = 402

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 11/173 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R+ +LSR D L+GL N   F               + L+++  D+D FK  ND +GH  
Sbjct: 222 ERLHRLSREDSLTGLANRRFFDEAFDREWRRCKRSQQPLTVMLVDVDRFKAYNDGYGHLQ 281

Query: 151 GDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD  +  L+ +L          V R GGEEFA     + E EA  LA+ L + + +  I 
Sbjct: 282 GDSCLQKLAAELHRYSRRAGDLVARFGGEEFALLYPETDELEAQQLASRLCRSVRSLAIP 341

Query: 210 ISSGPSIH-ITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFS 259
            +  P ++ +T+S G+A     +      ++  ADQALY+ K+ GR+    + 
Sbjct: 342 HADSPEMNEVTVSVGVATMIPNQRHSAGDLLEAADQALYLVKQGGRDNWRLYE 394


>gi|322433861|ref|YP_004216073.1| diguanylate cyclase with PAS/PAC and GAF sensors [Acidobacterium
           sp. MP5ACTX9]
 gi|321161588|gb|ADW67293.1| diguanylate cyclase with PAS/PAC and GAF sensors [Acidobacterium
           sp. MP5ACTX9]
          Length = 496

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 84/182 (46%), Gaps = 13/182 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           +  K L  +  ++ QL+  D L+GLLN  A    +         + E LSIV  D+D FK
Sbjct: 306 ARQKALEDANLKLEQLATRDGLTGLLNRRALDEKIELEFENVRRHKEPLSIVLLDVDNFK 365

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           + ND FGH  GD+V+  L   +          GR GGEE       +  + A + A  L 
Sbjct: 366 RRNDQFGHASGDQVLRQLGHLVSNTMRVLDTAGRYGGEEIVILLPKTDYEGALLFAKRLH 425

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
             I   +  I       +T S G+A         + ++ +AD A+Y AK+SG++R+V   
Sbjct: 426 DGIHRERWAIE-----PVTASLGVATTSATTKDSNRLLAQADDAMYEAKRSGKDRIVAHR 480

Query: 260 DI 261
           D+
Sbjct: 481 DV 482


>gi|229527885|ref|ZP_04417276.1| hypothetical protein VCG_000959 [Vibrio cholerae 12129(1)]
 gi|229334247|gb|EEN99732.1| hypothetical protein VCG_000959 [Vibrio cholerae 12129(1)]
          Length = 312

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 90/182 (49%), Gaps = 9/182 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           +   + +  +   R+  LS +D L+ + N  +F S L         +    S++ FDID 
Sbjct: 124 TAKNITQQQMLEQRLKILSEMDTLTEVHNRRSFSSLLSQSIKEYGIHGVTFSLILFDIDK 183

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND  GHP GD VI ++   +         +GRLGGEEF      S+  +A  +A  
Sbjct: 184 FKWVNDTLGHPAGDDVIKYVVKVIQQELHFTDVIGRLGGEEFGIILRDSNHDKAFKVAEK 243

Query: 199 LRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           LR  +  +   + +  S+ +TIS G+ +   +   +  +I RAD+A+Y +K  GRN+  C
Sbjct: 244 LRIRLAETMCELET-CSVRVTISLGVTQIMPNDSSMRHLISRADKAMYYSKMHGRNQTCC 302

Query: 258 FS 259
           + 
Sbjct: 303 YE 304


>gi|215486583|ref|YP_002329014.1| RNase II stability modulator [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215264655|emb|CAS09026.1| modulator of Rnase II stability [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 652

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 210 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 269

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 270 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 328

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    + II  AD A+Y AK+ GR +   F
Sbjct: 329 --LTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 386

Query: 259 SDIENN 264
           +   N 
Sbjct: 387 TPEMNQ 392


>gi|152993212|ref|YP_001358933.1| signal transduction protein [Sulfurovum sp. NBC37-1]
 gi|151425073|dbj|BAF72576.1| signal transduction protein [Sulfurovum sp. NBC37-1]
          Length = 958

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 101/206 (49%), Gaps = 12/206 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +L   L++ ++      +  YI+  + L+E+     + + L+  D L+GL N S+F   +
Sbjct: 485 VLPVWLTIAVVRNEKQDIQNYIAIYTNLEEIIKMETKANYLAYHDSLTGLPNRSSFEMRI 544

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                      +K++++F D+D FK IND  GH +GD+++  L+ ++         + R+
Sbjct: 545 NEILSVADIEKDKIAVLFIDLDRFKVINDTLGHHIGDEMLIELAHRIQTQLDNDTLLARI 604

Query: 176 GGEEFAAAA-LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PI 233
           GG+EF     L   ++EA   A  L  +I    I+I +   ++ T S GIA         
Sbjct: 605 GGDEFVVIMKLKMHKKEAGEQAEKLLDVIRE-PIDIQNYH-LNTTASIGIAIYPDDGKDK 662

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
           + I+  AD A+Y AK+ G++    ++
Sbjct: 663 NEIVKHADSAMYHAKEKGKDTFQFYT 688


>gi|229514351|ref|ZP_04403812.1| sensory box/GGDEF family protein [Vibrio cholerae TMA 21]
 gi|254284565|ref|ZP_04959532.1| sensory box/GGDEF family protein [Vibrio cholerae AM-19226]
 gi|150425350|gb|EDN17126.1| sensory box/GGDEF family protein [Vibrio cholerae AM-19226]
 gi|229348331|gb|EEO13289.1| sensory box/GGDEF family protein [Vibrio cholerae TMA 21]
          Length = 321

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 11/180 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            + + ++     ++ QL+  D L+ L N            +      + LS +  DID F
Sbjct: 140 STDITDIVELREQLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNF 199

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND FGH  GD+V+ FL+     V     F GR+GGEEF      +  + A  LA  +
Sbjct: 200 KLINDQFGHDKGDEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQI 259

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           R+          +    HI + AG++   H +  I+ I  R+DQALY AK++GRNR   +
Sbjct: 260 RQRFAEHPFFEQNE---HIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 316


>gi|148360463|ref|YP_001251670.1| GGDEF/EAL domain-containing sensory box protein [Legionella
           pneumophila str. Corby]
 gi|148282236|gb|ABQ56324.1| sensory box protein/GGDEF/EAL domains [Legionella pneumophila str.
           Corby]
          Length = 771

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 11/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
            + +     +++   +  D L+ L N    +  +     +       L+ +F D+D FK 
Sbjct: 325 DVTQRRDMEDQLLLQATYDSLTNLPNRVLLMDRVEQAILQARKNKAILAFLFLDLDRFKL 384

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLR 200
            ND  GH +GDK++  ++++L++V      V RLGG+EF           EA  +A ++ 
Sbjct: 385 TNDTLGHGMGDKLLQAIANRLLIVTEDFDTVARLGGDEFVILLTDIDNMLEAETIAQNIL 444

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           KIIE   I I    S+ IT S GI+      +   +++  AD ++Y AK +GRN    + 
Sbjct: 445 KIIEK-PIQI-DQHSLKITGSLGISFYPRDGDDYESLMKSADLSMYHAKDTGRNNYRVYE 502

Query: 260 DIENN 264
              N 
Sbjct: 503 PEMNR 507


>gi|73542351|ref|YP_296871.1| putative sensor protein [Ralstonia eutropha JMP134]
 gi|72119764|gb|AAZ62027.1| PAS:GGDEF [Ralstonia eutropha JMP134]
          Length = 1129

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 9/208 (4%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS- 124
           V++ +  +++ T ++L   +    +         ++  +  D L+GL N + F   L   
Sbjct: 649 VQDSAAPVLTATGTVLGAVLVFQDITTARAMQRELAHSAMHDALTGLPNRTWFEKRLREA 708

Query: 125 ------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                      ++ F D+D FK +ND  GH  GD ++  L   +         + RLGG+
Sbjct: 709 CDAARTQGHHGALCFIDLDRFKIVNDTAGHGAGDILLRELGYLIRNHVRPDDLLARLGGD 768

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTII 237
           EF       +  +A  + + +   I + +     G    +  S GIA       P+  ++
Sbjct: 769 EFGLLLKDCTVDQAETIGHGVIDAIRSRRFPW-DGRVYDVGASIGIAAIDQDVPPVGELM 827

Query: 238 YRADQALYVAKKSGRNRVVCFSDIENNT 265
            RAD A Y AK +GR+RV  +   E++ 
Sbjct: 828 SRADVACYAAKAAGRSRVSVYRRDESDA 855


>gi|220932323|ref|YP_002509231.1| diguanylate cyclase [Halothermothrix orenii H 168]
 gi|219993633|gb|ACL70236.1| diguanylate cyclase [Halothermothrix orenii H 168]
          Length = 462

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 85/185 (45%), Gaps = 10/185 (5%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLS 130
           I  +L   +G +L +L +    I+ L+  D  + L N   F   L          N+ LS
Sbjct: 273 ILRVLADQTGLLLNKLEL-IEEINYLAITDEGTDLYNQRYFYKRLNRLFSYAKKNNKPLS 331

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +V FDID FK +ND++GH  GDKV+  ++  L         + R GGEEFA     +   
Sbjct: 332 VVIFDIDNFKSLNDSYGHLFGDKVLREVASLLQDNIRKNDILARYGGEEFALILPKTGAS 391

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAK 248
            A  +A  +R I+         G  I I+IS GIA            +I  AD+ALY +K
Sbjct: 392 IAYNIAERIRCIVNKHIFETGGGHKIKISISGGIATYPECKVSKAIELIDLADKALYKSK 451

Query: 249 KSGRN 253
             G+N
Sbjct: 452 DDGKN 456


>gi|238783471|ref|ZP_04627494.1| Diguanylate cyclase with PAS/PAC sensor [Yersinia bercovieri ATCC
           43970]
 gi|238715716|gb|EEQ07705.1| Diguanylate cyclase with PAS/PAC sensor [Yersinia bercovieri ATCC
           43970]
          Length = 693

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 73/182 (40%), Gaps = 8/182 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDI 136
             +    +         +   +  D L+GL+N       L     +L       + + D+
Sbjct: 511 AVVVFQDVTRARHEQRELQYQANHDMLTGLINRRRLEERLTHAISQLGESEQHILCYVDL 570

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK++ND  GH  GD V+  ++  +         V RLGG+EFA        + A  + 
Sbjct: 571 DYFKEVNDTAGHEAGDMVLRMVAQTMQQAVRENDIVARLGGDEFAIVLFNCKNKPATDIL 630

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             +   I   Q +   G S   T S G      + E  +  + +AD A Y AK +GRNR+
Sbjct: 631 EQVVADIAAIQFHWR-GQSYAFTASLGAVPLIRQVETAAQAMRQADIACYAAKHAGRNRL 689

Query: 256 VC 257
             
Sbjct: 690 SF 691


>gi|239993246|ref|ZP_04713770.1| Signaling protein with a acyltransferase and GGDEF domains
           [Alteromonas macleodii ATCC 27126]
          Length = 632

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 11/177 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L+EL      + +L+ ID L+G  N   F   L S           LS++  D+D+FKQI
Sbjct: 449 LRELSEVNQELERLNAIDPLTGAHNRRHFDKRLRSEGRRSRREQTPLSLIIVDVDHFKQI 508

Query: 143 NDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND  GH  GD  +  +++     +      + R+GGEEFA     +  + A  +A ++R 
Sbjct: 509 NDQHGHDGGDACLIHVTNVFQKHIHRPTDDLCRIGGEEFAIILPNTDLEGAFHVAENMRD 568

Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +E++ ++   G  I +T SAG++      +E    +   AD+ LY AK +GRN V+
Sbjct: 569 SLESTPLDY-EGEIIKLTASAGVSTTIIIDEEHAQNLFKFADECLYEAKAAGRNTVI 624


>gi|115523504|ref|YP_780415.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
 gi|115517451|gb|ABJ05435.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
          Length = 232

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 83/173 (47%), Gaps = 10/173 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +L     +I  L+  D L+G+ NH  F   L           E LS +  D+D+FK IND
Sbjct: 62  KLQQREAQIVALTLTDSLTGVGNHRRFEQDLTTEIKRFERTGEPLSALMVDLDHFKTIND 121

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           NFGH  GD+V+A   D L+V         R+GGEEF      ++  EA   A  LR    
Sbjct: 122 NFGHDAGDQVLATFGDLLLVQLRATEIATRIGGEEFVVLLPHTALDEAKATAERLRAATA 181

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +I+   G  + +T S G+A     E     + R DQALY AK +GRN VV 
Sbjct: 182 ELRIH---GLPLDVTASFGVATMAPGEDRIAFMRRLDQALYRAKHAGRNCVVA 231


>gi|90425011|ref|YP_533381.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
 gi|90107025|gb|ABD89062.1| diguanylate cyclase (GGDEF domain) [Rhodopseudomonas palustris
           BisB18]
          Length = 452

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 62/179 (34%), Positives = 87/179 (48%), Gaps = 14/179 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL     R++ L+  D L+GL N   F  +L         +    S+V +D+D+FK +ND
Sbjct: 276 ELRDRARRLAVLATTDRLTGLYNRLKFDEALVAEIARAERFRMPFSLVIYDVDHFKVVND 335

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGHP+GD V+A LSD +         + R GGEEFA    GS       +A  LR  I 
Sbjct: 336 AFGHPIGDSVLAGLSDVVSSQLRATDTLARWGGEEFAILVTGSD---GCFVAEKLRTAIA 392

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
               +   G    +T S G+ E    +    ++ RAD ALY AK  GRNRV  ++  E+
Sbjct: 393 GVSFDRVGG----VTCSFGVTEYLEGDTPEIMVARADAALYQAKVKGRNRVELYASPES 447


>gi|27366135|ref|NP_761663.1| GGDEF domain-containing protein [Vibrio vulnificus CMCP6]
 gi|27362335|gb|AAO11190.1| GGDEF domain protein [Vibrio vulnificus CMCP6]
          Length = 540

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 8/172 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           KEL  +      L+  D ++ L N       I+      +  S++F D+D FK +ND +G
Sbjct: 362 KELKSAERFARHLASHDSVTDLPNRTAVRQAIAKFLERKQPFSLLFIDLDGFKAVNDEYG 421

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD ++  ++ +L+   G      R  G+EF       S QEA  +A  L + I    
Sbjct: 422 HQTGDLLLKAVAQRLLDTVGQEDMAARYAGDEFIVLLKNQSTQEATQIAQALLETIAI-- 479

Query: 208 INISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVV 256
             I    ++ I  S G+     +     + ++I+ AD A+Y AK +G+ RVV
Sbjct: 480 PVIVERKALVIGASIGLVTVDVETTSTNVDSLIHEADIAMYQAKSAGKGRVV 531


>gi|311108884|ref|YP_003981737.1| diguanylate cyclase [Achromobacter xylosoxidans A8]
 gi|310763573|gb|ADP19022.1| diguanylate cyclase, GGDEF domain protein 18 [Achromobacter
           xylosoxidans A8]
          Length = 588

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 14/184 (7%)

Query: 86  SGSILKELFISYNRISQ----LSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVF 133
           + + +++L +  +R+ Q    ++  D L+GLLN  AF   L +          + L+ + 
Sbjct: 399 NAAAVRKLELERDRLIQDLAIMAETDFLTGLLNRRAFEKRLEAALDDMRHDDGDGLTFIL 458

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           FD+D+FK IND  GH  GD+ +  ++D     F     V R+GGEEFAA       +   
Sbjct: 459 FDLDHFKSINDTHGHATGDEALKTVADLCRSTFRQSDVVARVGGEEFAALCRSRRPEPVR 518

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSG 251
            +A  +R  I  +QI+        +T S G+A     +   +  +  RAD+ LY AK +G
Sbjct: 519 DVAERMRLNIARTQISAGGAARFSMTASFGVAHARSGDTAALENLSRRADELLYKAKLNG 578

Query: 252 RNRV 255
           RN V
Sbjct: 579 RNCV 582


>gi|220923248|ref|YP_002498550.1| diguanylate cyclase [Methylobacterium nodulans ORS 2060]
 gi|219947855|gb|ACL58247.1| diguanylate cyclase [Methylobacterium nodulans ORS 2060]
          Length = 353

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 9/181 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           S   ++ L      +   S  D L+G+ N   F   L           + ++++  DID+
Sbjct: 162 SREEIRSLHEMLEAVRVESLTDPLTGIGNRKLFEEVLHKAVGDAVANRQSIALIVLDIDH 221

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+ ND +GH  GD+V+  ++  +  +  +   + R GGEEF          +A  LA  
Sbjct: 222 FKRFNDVYGHLTGDRVLRLVALTMREMVDSRATIARFGGEEFGVIVPYGGRDDALDLAER 281

Query: 199 LRKIIENSQ-INISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +R  +   + +  SSG S+  +T+S G+A     +   ++I RADQ ++ AK+SGRNRVV
Sbjct: 282 IRTSVMGRELVKRSSGESLGRVTVSVGVAAYRAGDTAVSLIERADQCMFAAKRSGRNRVV 341

Query: 257 C 257
            
Sbjct: 342 V 342


>gi|86750359|ref|YP_486855.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
 gi|86573387|gb|ABD07944.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2]
          Length = 420

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 106/246 (43%), Gaps = 13/246 (5%)

Query: 24  PHTFMIYFSIFFSIF-IATVIFIANIFLFYIGLTPFYGLEYI--LVENLSLVIISITISL 80
           P   +++ SI   +  IA  +F   I + +  L  +Y + ++  LV     ++ +     
Sbjct: 162 PSVVILHISIVLGLVGIAATVFGIAIAIPFCLLYLWYQIGFVMELVALRRKMLKADHDRR 221

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVF 133
            L         +L     ++S  +  D L+G+ N   F   L             L+++ 
Sbjct: 222 QLLTQVTRYNADLASLNTQLSAFALTDGLTGVGNRRDFDDKLQRFLTGQTNATTPLALLL 281

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEA 192
            D+D FK++ND +GH VGD+ +  L+  +  V   +   V R GGEEFAA    +    A
Sbjct: 282 IDVDRFKRLNDTYGHLVGDQCLKLLATAIRCVVSRSGDVVARYGGEEFAAILPATDAATA 341

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKS 250
             +A  +R+ IE   +          T+S G+        +    +I  AD ALY AK+S
Sbjct: 342 LAIAERIRRAIETMDLAGLPKLDERPTVSIGVGIAASGTTMLPHALIEIADAALYAAKQS 401

Query: 251 GRNRVV 256
           GRN V 
Sbjct: 402 GRNCVR 407


>gi|88857798|ref|ZP_01132441.1| diguanylate cyclase (GGDEF domain) [Pseudoalteromonas tunicata D2]
 gi|88820995|gb|EAR30807.1| diguanylate cyclase (GGDEF domain) [Pseudoalteromonas tunicata D2]
          Length = 339

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 13/188 (6%)

Query: 83  GYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVF 133
             +   +   L    N+  + +L+ +D L+ + N   +   +          N+ +S+  
Sbjct: 150 AIVQARVKNVLREQRNKKLLEKLALVDSLTEIYNRRFYELDIRKVWNGCKRENKAISLAL 209

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            DIDYFK  ND +GH  GD+ +  ++  +   +      + R GGEEF      ++  +A
Sbjct: 210 LDIDYFKSYNDEYGHLSGDEALRLVAKHIKNQLKRPHDIIARYGGEEFVIVLPDTNADDA 269

Query: 193 AILANDLRKIIENSQINISSGP-SIHITISAGIAE--RCHKEPISTIIYRADQALYVAKK 249
             +  D+ + IE  +I   S   S ++TIS G A     H+     ++   D+ LY AK 
Sbjct: 270 KRILTDICQSIEQLKIPHESSVISHYVTISIGGATMIPKHEASHEELVKIVDEYLYQAKA 329

Query: 250 SGRNRVVC 257
            GRNRV  
Sbjct: 330 QGRNRVCW 337


>gi|261212979|ref|ZP_05927263.1| sensory box/GGDEF family protein [Vibrio sp. RC341]
 gi|260838044|gb|EEX64721.1| sensory box/GGDEF family protein [Vibrio sp. RC341]
          Length = 308

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 60/195 (30%), Positives = 92/195 (47%), Gaps = 12/195 (6%)

Query: 73  IISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
           I+      ++G I   + + ++     ++ QL+  D L+ L N            +   +
Sbjct: 112 ILHRLTGEVIGLIGVSTDITDIVELREQLYQLANTDSLTQLCNRRKLWADFRSAFTRAKN 171

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
             + LS +  DID FK IND FGH  GD+V+ FL+     V     F GR+GGEEF    
Sbjct: 172 SKQPLSCISIDIDNFKLINDQFGHDKGDEVLCFLARLFHHVISEHHFCGRVGGEEFIIVL 231

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQA 243
             +  + A  LA  +R+               HI + AG++   H++  I+ I  R+DQA
Sbjct: 232 ENTDVETAFALAEQIRQRFAEQPFF---DQQEHIYLCAGVSSLHHEDHDIADIYRRSDQA 288

Query: 244 LYVAKKSGRNRVVCF 258
           LY AK+SGRNR   +
Sbjct: 289 LYKAKRSGRNRCCIY 303


>gi|227327435|ref|ZP_03831459.1| putative signaling membrane protein [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 495

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 121/250 (48%), Gaps = 24/250 (9%)

Query: 28  MIYFSIFFSIFIATVI-FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS 86
           +   +  +S  I +++  I  + L Y+    +     IL+++ S   I+  ++     I+
Sbjct: 244 LTLCAFNYSFPIMSLLCAITGVILNYL----YINQVGILIDSNSEAYINSFLTTARLNIA 299

Query: 87  GSILKELFISY-----NRISQL----SRIDCLSGLLNHSAFISSLG--------SYNEKL 129
             I+  L +S+      R+ ++    SR D L+   N  AF+S L             +L
Sbjct: 300 MLIMAMLSVSHFVSMNRRLIKIIESGSRKDALTNTFNRRAFLSMLNGKQSAPGYKKKRQL 359

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++F DIDYFKQ+ND +GH  GD++IA  +  L         + R GGEEF  AA   + 
Sbjct: 360 TLLFLDIDYFKQVNDTYGHACGDELIASFARMLSTTIRPSDILCRWGGEEFVIAAYDLTA 419

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVA 247
           +++  +A  LR + E++ + +S G  IH T S G+A         I  +I  AD+ LY A
Sbjct: 420 EQSEAMAEALRHLTESTALTLSDGREIHFTTSIGVAVFAQYEGGNIYDLIGLADEQLYKA 479

Query: 248 KKSGRNRVVC 257
           K  GRNRV  
Sbjct: 480 KAQGRNRVCM 489


>gi|157377278|ref|YP_001475878.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sediminis HAW-EB3]
 gi|157319652|gb|ABV38750.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sediminis HAW-EB3]
          Length = 875

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 85/193 (44%), Gaps = 16/193 (8%)

Query: 82  LGYISGSILKELFISYN---RISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLS 130
           L  ++  +  E+        ++   +  D L+GL N + F+  L            ++ +
Sbjct: 425 LAILNQDLENEIAQRRKIELQLVHDANHDTLTGLPNRAMFMERLSQAVKHIRRHGLDRFA 484

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-E 189
           ++F D+D FK IND  GH  GD+ +   S +L +       +GR+GG+EF       +  
Sbjct: 485 LLFIDLDRFKLINDTLGHLEGDRFLMETSSRLKLCIRDNDTLGRIGGDEFVILLDSINGT 544

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVA 247
            +A  +A  +   +      +++   I    S GIA   +   +   +++  AD A+Y A
Sbjct: 545 DDAEEVAERVLTELSR-PYKLANQHFIS-GASIGIAFSHNHKSDTSESLLRDADAAMYQA 602

Query: 248 KKSGRNRVVCFSD 260
           K +G+   V + D
Sbjct: 603 KTNGKGCYVIYDD 615


>gi|126174071|ref|YP_001050220.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|125997276|gb|ABN61351.1| diguanylate cyclase [Shewanella baltica OS155]
          Length = 341

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 96/209 (45%), Gaps = 12/209 (5%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKE------LFISYNRISQLSRIDCLSGL 112
           + +E +L    SLV  S  I     + +G + K       L     +  +    D L+G 
Sbjct: 128 FSVEQVLDLVRSLVKESDNIRSSTEFFTGQLQKAQTEIDALKKKLEQTEKDVLYDALTGC 187

Query: 113 LNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N  AF S     L       S++  DID+FK  ND +GH +GD+V+  ++ +L      
Sbjct: 188 FNRRAFDSDFAGMLAQAPLGTSLILADIDHFKVFNDTYGHQLGDQVLRAVAKRLQESCRD 247

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITISAGIAE 226
              + R GGEEF      S  + A  LA  +R+ +E   + +      I +I+ S G+A+
Sbjct: 248 GAKLYRFGGEEFVIIVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDERINNISASFGVAQ 307

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRV 255
              K+    +I  AD+ LY AK+ GRNRV
Sbjct: 308 WQEKQTGMQLIEAADKLLYDAKRLGRNRV 336


>gi|323185551|gb|EFZ70912.1| protein gmr [Escherichia coli 1357]
          Length = 605

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 163 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 222

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 223 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 281

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 282 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 339

Query: 259 SDIENN 264
           +   N 
Sbjct: 340 TPEMNQ 345


>gi|284054182|ref|ZP_06384392.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira platensis str.
           Paraca]
          Length = 488

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 60/276 (21%), Positives = 112/276 (40%), Gaps = 23/276 (8%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIF-------IATVIFIANIFLFYIGLTP 57
           + D     +C++   E ++    +I+ S    IF       +  V +I+  F F   L  
Sbjct: 52  MPDIDGYAVCNQLKSEPYTAEVPIIFLSALDDIFDKVKAFEVGGVDYISKPFQFQEVLIR 111

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
                 +      L +++      L        +EL I+ +++  ++  D L+ L N + 
Sbjct: 112 VKNQLTLRRTQQQLQVLNTQ----LEARVEQRTQELEIANSKLRDMAFRDDLTNLPNRAL 167

Query: 118 FISSL--------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
           F+  L          +N    ++  D D FK IN++ GH VGD+++  +S +L  +    
Sbjct: 168 FLERLADGIDVKQEHHNYNFVVLLLDCDRFKMINESLGHSVGDQLLIAISKRLKSLLKPE 227

Query: 170 MFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ER 227
             + RLGG+EFA          EA  +A  + +    S   +     + I +S GI+   
Sbjct: 228 DTLARLGGDEFAIMVNKIEDMAEAKAMAQKVLESF--SHPFVLPNQEVFINVSIGISGSH 285

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
              +    ++  AD A+Y AK  G+ +   F    +
Sbjct: 286 LDYQKPEHMLRDADTAMYRAKDLGKGQYHIFDPSMH 321


>gi|289208548|ref|YP_003460614.1| response regulator receiver modulated diguanylate cyclase
           [Thioalkalivibrio sp. K90mix]
 gi|288944179|gb|ADC71878.1| response regulator receiver modulated diguanylate cyclase
           [Thioalkalivibrio sp. K90mix]
          Length = 436

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 52/190 (27%), Positives = 89/190 (46%), Gaps = 14/190 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           +  +++E+ +   +  +++ +D L+GL N +A              +++ L+++  D+D+
Sbjct: 247 NKRLMEEVRLQRQKHYEMAMVDPLTGLSNRNALTEFASRFFDEPCSHDQPLALILMDLDH 306

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND  GH VGD+V+A +   L  V        R GGEE      GS   +A   A D
Sbjct: 307 FKDINDRHGHLVGDEVLAAIGQLLRAVAAPGEIPVRFGGEELLMLMPGSDLFDAHTRAED 366

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
           LR+ +++          + +T S G+  R          +   AD+A+Y AK  GRN VV
Sbjct: 367 LRQRVQDLHP-----AGLPLTASFGVTSREPGSDAELNDLFRAADEAVYNAKAQGRNCVV 421

Query: 257 CFSDIENNTC 266
                 +N+ 
Sbjct: 422 SLPGKHHNSA 431


>gi|146308284|ref|YP_001188749.1| diguanylate cyclase [Pseudomonas mendocina ymp]
 gi|145576485|gb|ABP86017.1| diguanylate cyclase [Pseudomonas mendocina ymp]
          Length = 375

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 85/211 (40%), Gaps = 23/211 (10%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISY-------------NRISQLSRIDCLSG 111
            ++   L ++ + + L   Y+     +     +              ++  L   D L+G
Sbjct: 159 WLQVWVLFVLLVWLCLFSSYVQAMRKRMRQRRFALQAHQDTLRGMMRQLEDLVATDELTG 218

Query: 112 LLNHSAFISSLGS------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           L N   F+           +  +  +   D+D+FK+IND  GH  GD+V+   +      
Sbjct: 219 LFNRRHFLRLACRELEHLGHGRQHGLALIDLDHFKRINDAHGHAAGDRVLQTFAAVARAC 278

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGI 224
                 + R GGEEF      +   +       LR+    ++     G  I ++++SAG+
Sbjct: 279 LRDGDIIARYGGEEFVLLLPNTDADQFTTCCERLREAFARAEP---VGVKIDNLSLSAGM 335

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                 + +   + RADQALY AK+ GRNR 
Sbjct: 336 TLLTAGDQLDEALQRADQALYQAKRGGRNRC 366


>gi|52142967|ref|YP_083862.1| sensory box/GGDEF family protein [Bacillus cereus E33L]
 gi|51976436|gb|AAU17986.1| sensory box/GGDEF family protein [Bacillus cereus E33L]
          Length = 912

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 96/200 (48%), Gaps = 10/200 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           +++V I I       Y+    + ++    ++I+ L+  D ++ + N   F   L    E+
Sbjct: 450 VTIVPIMIEGQTFGSYVMVKDITKMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIER 509

Query: 129 -------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                    +++ D++ FK IND  GH +GD V+  ++ +        + + R+GG+EFA
Sbjct: 510 AQKTQGEFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSIPLARIGGDEFA 569

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRA 240
                 +EQ+   L  +L +I E +   + +  S ++++S GIA         +T++  A
Sbjct: 570 VLVHNHTEQQLLDLCENLFRITEKT--FVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHA 627

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D A+Y AK+ G N V  + +
Sbjct: 628 DIAMYSAKEKGNNAVCMYDE 647


>gi|85711464|ref|ZP_01042522.1| Intracellular signaling protein (PAS,GGDEF domains) [Idiomarina
           baltica OS145]
 gi|85694616|gb|EAQ32556.1| Intracellular signaling protein (PAS,GGDEF domains) [Idiomarina
           baltica OS145]
          Length = 300

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 10/178 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDY 138
             ++  E      R+  ++  D L+ L N + F   + +   +       L I++ D+D 
Sbjct: 117 QRALEHEREALIERLEHMALTDSLTQLPNRALFYDRVRTAQARAERDAGGLGILYLDLDK 176

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND++GH  GD+++  ++ ++           RLGG+EF      S  ++     + 
Sbjct: 177 FKAVNDHYGHATGDELLKAVATRIQSAIRNTDTAARLGGDEFVVLVDASHTRQLDSAIDK 236

Query: 199 LRKIIENS--QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           +   I+ +    +I    S+ IT S G+A    H   I  +++ ADQA+Y AK+ G N
Sbjct: 237 VVNKIQAALKPPHIMKHGSLAITTSIGVAMWPEHGHSIEQLLHHADQAMYNAKRRGGN 294


>gi|329902938|ref|ZP_08273315.1| EAL/GGDEF/PAS/PAC-domain containing protein [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327548552|gb|EGF33214.1| EAL/GGDEF/PAS/PAC-domain containing protein [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 634

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 84/188 (44%), Gaps = 11/188 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           ++   + +  I    + +++  D L+ L N +         I         ++++F D+D
Sbjct: 169 MTLRDISKKKIHERELWRMANEDGLTELPNRNWLTGFLPEAIRQARLAGRLVAVLFIDLD 228

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILA 196
            FK +ND  GH  GD+++   + +L  +      V RLGG+EF       +++ A A++A
Sbjct: 229 DFKDVNDTLGHSAGDELLRVAARRLQSILRPGDHVARLGGDEFTVILSSIADRHAGALVA 288

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             + +    +   +  G    + IS GI+         S ++  AD A+Y AK +G+NR 
Sbjct: 289 QRIIEAFA-TPFELGHGTD-TVGISIGISLFPDDGHDASDLLKNADIAMYCAKTAGKNRA 346

Query: 256 VCFSDIEN 263
             +    +
Sbjct: 347 RFYESRMS 354


>gi|312884160|ref|ZP_07743872.1| GGDEF family protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368208|gb|EFP95748.1| GGDEF family protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 337

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 5/172 (2%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNF 146
           +  L      + Q +  D L+ L N  +F   +       +KL ++  D+D+FK  NDN+
Sbjct: 164 INRLKAQLAEVQQDALFDGLTSLYNRRSFDQDINALYQSEQKLCLILADVDHFKAFNDNY 223

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH +GD V+  L+  L       +   R GGEEFA        + A   A  +R+  E  
Sbjct: 224 GHLLGDAVLKGLARTLQRGCRDGISAYRFGGEEFALIVPNKPLRIARQFAETMRRATEKL 283

Query: 207 QI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +    S     +ITIS G+AE   KE + ++I RAD  LY AK  GRNRV+
Sbjct: 284 SVKDRRSGKHVGNITISLGVAELQEKESVESLIERADGLLYEAKSLGRNRVM 335


>gi|291288785|ref|YP_003505601.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885945|gb|ADD69645.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 1019

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 10/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQI 142
            + E      +I   +  D L+GL N   F   L     K      + I+F D+D FK +
Sbjct: 579 DITEQKRYEEQIKYQATHDSLTGLPNRIYFTDKLAEQIPKNHLPSCIGIMFLDLDRFKNL 638

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRK 201
           ND  GH  GDKV+  +++++      P    R  G+EF     G   Q+A I +  ++ K
Sbjct: 639 NDTLGHTTGDKVLEIIAERIRNTVHGPDMAARFSGDEFTVFFTGVKNQDALIEMVKNVTK 698

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
            I  S+     G  + I  SAGI+         S +I  A+ A+Y AK++G+N +  ++D
Sbjct: 699 RI--SEPLHIQGYELFIQTSAGISVYPDNGLTASELIKNAEIAMYQAKQTGKNNIQLYTD 756

Query: 261 IENNT 265
             + T
Sbjct: 757 GLDET 761


>gi|213969082|ref|ZP_03397221.1| response regulator/GGDEF domain protein [Pseudomonas syringae pv.
           tomato T1]
 gi|301384024|ref|ZP_07232442.1| response regulator/GGDEF domain protein [Pseudomonas syringae pv.
           tomato Max13]
 gi|302058730|ref|ZP_07250271.1| response regulator/GGDEF domain protein [Pseudomonas syringae pv.
           tomato K40]
 gi|302131692|ref|ZP_07257682.1| response regulator/GGDEF domain protein [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213926080|gb|EEB59636.1| response regulator/GGDEF domain protein [Pseudomonas syringae pv.
           tomato T1]
          Length = 334

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+GL N   F   L            +LS++  D+DYFK  N
Sbjct: 156 QQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRATRDQAQLSLLMIDVDYFKAYN 215

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DNFGH  GD+ +  ++  +            R GGEEFA     +S   A +LA  LR+ 
Sbjct: 216 DNFGHLEGDEALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQS 275

Query: 203 IENSQI-NISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
           +    I +I+  P   +T+S G+A       +    +I  AD+ LY+AK +GRN+V  
Sbjct: 276 VAGMNIPHIAPVPGSSLTVSIGVATVTPQVGQHSRQLILDADKGLYLAKNNGRNQVAA 333


>gi|156976227|ref|YP_001447133.1| diguanylate cyclase/phosphodiesterase [Vibrio harveyi ATCC
           BAA-1116]
 gi|156527821|gb|ABU72906.1| hypothetical protein VIBHAR_04999 [Vibrio harveyi ATCC BAA-1116]
          Length = 775

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 78/186 (41%), Gaps = 11/186 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S ++    S   ++  ++ D L+GL N       L             + ++F D+D+FK
Sbjct: 332 SEIERRKSSEMELAYQAKHDALTGLPNRVYGSERLDLELSRAERMKSNVLVMFIDLDHFK 391

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           QIND+ GH VGD+V+   +++L         + R+GG+EF            A   A  +
Sbjct: 392 QINDSMGHFVGDEVLKLAAERLHNAVRKTDLLARIGGDEFLLVIPDLQDVDSAKRFAATV 451

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++  +       ++ S G++      +    ++  AD A+Y  K+ GRN    +
Sbjct: 452 LSVF--NEPFVWQNHEFFLSASVGMSVFPEDGDNAEQLLACADMAMYRVKQDGRNAFCFY 509

Query: 259 SDIENN 264
               N 
Sbjct: 510 DHNMNQ 515


>gi|149908192|ref|ZP_01896856.1| hypothetical protein PE36_01762 [Moritella sp. PE36]
 gi|149808734|gb|EDM68667.1| hypothetical protein PE36_01762 [Moritella sp. PE36]
          Length = 325

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 9/173 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           +L      +   +  D L+ + N   F         +     + L+++  DID FK IND
Sbjct: 134 QLQALTKELHTRASTDELTVISNRRNFYEMAEIEFINAQHGQKPLTLLLIDIDNFKIIND 193

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +FGH  GD V+   +  +     +    GRLGG+EFA     +   E+  LA   R  I 
Sbjct: 194 SFGHAAGDMVLKAFAQNIKTELRSGDIFGRLGGDEFAILLPNTDCNESLPLAELFRNTIA 253

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             +I+      + +T S GI +     + I  ++  AD ALY AK +GRN V 
Sbjct: 254 KMKIDHKEQH-LQLTASIGIVQSSAAMQSIHAMMNAADTALYQAKSAGRNTVC 305


>gi|153801376|ref|ZP_01955962.1| sensory box/GGDEF family protein [Vibrio cholerae MZO-3]
 gi|153828092|ref|ZP_01980759.1| sensory box/GGDEF family protein [Vibrio cholerae 623-39]
 gi|297580011|ref|ZP_06941938.1| sensory box/GGDEF family protein [Vibrio cholerae RC385]
 gi|124123042|gb|EAY41785.1| sensory box/GGDEF family protein [Vibrio cholerae MZO-3]
 gi|148876501|gb|EDL74636.1| sensory box/GGDEF family protein [Vibrio cholerae 623-39]
 gi|297535657|gb|EFH74491.1| sensory box/GGDEF family protein [Vibrio cholerae RC385]
          Length = 321

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 11/180 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            + + ++     ++ QL+  D L+ L N            +      + LS +  DID F
Sbjct: 140 STDITDIVELREQLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNF 199

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND FGH  GD+V+ FL+     V     F GR+GGEEF      +  + A  LA  +
Sbjct: 200 KLINDQFGHDKGDEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQI 259

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           R+          +    HI + AG++   H +  I+ I  R+DQALY AK++GRNR   +
Sbjct: 260 RQRFAEHPFFEQNE---HIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 316


>gi|34497306|ref|NP_901521.1| hypothetical protein CV_1851 [Chromobacterium violaceum ATCC 12472]
 gi|34103162|gb|AAQ59525.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 545

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 62/238 (26%), Positives = 107/238 (44%), Gaps = 23/238 (9%)

Query: 35  FSIFIATVIFIANIFL----FYIGLTPFY----GLEYILVENLSLVIISITISLLLGYIS 86
           F++  A + F+    L     YI L P +      + +    L L  + I     +G++ 
Sbjct: 301 FTLRQALIAFLVFSVLACGGMYIVLRPLFRAARHADRMTRGELPLEPLPIRRKDEVGHLI 360

Query: 87  G---SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
                +L++L      ++Q++  D L+GL N S     L          + +L+++F D+
Sbjct: 361 AAFNRLLRKLEDKQTELAQMAHHDALTGLPNRSLLSDRLHVALAQAQRRDTRLALLFMDL 420

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA---ALGSSEQEAA 193
           D FK IND+ GH  GDKV+   + +L  +      + R+GG+EF          +E  A 
Sbjct: 421 DSFKLINDSLGHKAGDKVLWQAAQRLSGIVRQSDTLARIGGDEFVLLISDLDDKAEDVAR 480

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
            +AN   +    +   + SG +  + IS GIA         +++  ADQA+Y  KK+G
Sbjct: 481 TVANKCLEAF--NVPFLVSGTACQLGISIGIAIGDGYSSADSLLQAADQAMYRVKKTG 536


>gi|152968288|ref|YP_001364072.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216]
 gi|151362805|gb|ABS05808.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216]
          Length = 613

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 10/163 (6%)

Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           + +  D L+GL N +     L           +++++++ D+D FK +ND  GH  GD V
Sbjct: 437 EAALHDPLTGLPNRTLLEDRLRHALSAAHRSGDRVALLYCDLDDFKPVNDTGGHAAGDHV 496

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSG 213
           +  ++++L         V R+GG+EFA        E  AA++A  + + +   +    +G
Sbjct: 497 LIAVAERLSAAVRPGDTVARIGGDEFAVVCPDLPDEAAAAVVAGRIVEAMA--EPFPVAG 554

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               + IS G+A    +   + ++ +AD A+Y AK SG+ RV 
Sbjct: 555 WEFRVGISVGLAMAGSRTDAARVLQQADAAMYEAKGSGKGRVR 597


>gi|288940939|ref|YP_003443179.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
 gi|288896311|gb|ADC62147.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
          Length = 273

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 8/188 (4%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFF 134
           L  +    ++      + + +++ +D L+G       +            +   L+++  
Sbjct: 84  LNEVLHKEIERREALEHELRRIASLDELTGTHTRRHVLELGEHEQRRRARHGHDLALLMV 143

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D+FK++ND FGH  GD+V+      L          GR GGEEF A    +    A  
Sbjct: 144 DLDHFKRVNDGFGHAAGDQVLRDFGFLLRSCLRKGDIAGRFGGEEFLAILPETDLATARS 203

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +A  L   +  ++  +     + +T+S G+      E +   I RADQALY+AK++GR++
Sbjct: 204 IAERLCDRVRENR-TLWKDHVLAVTVSIGLVTVHGDESLDKAIARADQALYLAKRAGRDQ 262

Query: 255 VVCFSDIE 262
           V+  ++ +
Sbjct: 263 VMVGTEPD 270


>gi|239996281|ref|ZP_04716805.1| diguanylate cyclase [Alteromonas macleodii ATCC 27126]
          Length = 586

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 59/200 (29%), Positives = 98/200 (49%), Gaps = 12/200 (6%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------I 119
           +N  L+I  +  + +L  +   I ++L  +   + + ++ D L+ + N   F       +
Sbjct: 373 QNHRLLITLLASTTILVLMWAIINRKLHAA---LREKAQTDSLTKVANRHYFTELASKAL 429

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
             +    + LS V FD+D+FK +ND++GHP GD V+  + + +          GRLGGEE
Sbjct: 430 DRMSEQQDVLSFVIFDLDHFKSVNDSYGHPTGDWVLKAVVNAVRKHCRKEDVFGRLGGEE 489

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIY 238
           F     G +E++A  +A  +R  I        SG +  I+ S GI+     +     +  
Sbjct: 490 FGLLLPGCNEKKAKEIAECMRNSIRQID-TAESGFTFDISASFGISSTASSKYQFEALYA 548

Query: 239 RADQALYVAKKSGRNRVVCF 258
            AD+ALY +KK GRNRV  F
Sbjct: 549 NADEALYGSKKHGRNRVSVF 568


>gi|148558900|ref|YP_001258245.1| sensory box protein [Brucella ovis ATCC 25840]
 gi|148370157|gb|ABQ60136.1| sensory box/GGDEF domain/EAL domain protein [Brucella ovis ATCC
           25840]
          Length = 703

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFF 134
           L+G +    + E      R+  ++  D L+GL N + F   +GS  +        ++ + 
Sbjct: 249 LIGLV--EDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHVGSLLKKGSDCDPFALFYL 306

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK +ND+  H  GD+++  ++ +L  +     F+ RLGG+EFA      +  + A+
Sbjct: 307 DIDHFKNVNDSISHQAGDELLQKVALRLRQITTADQFIARLGGDEFAIVYRSGTLAQIAM 366

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
            A+ +    ++    +  G +  +T S GIA+   H +    ++  AD ALY +K  GR 
Sbjct: 367 FADRVLSAFQD--PFVLGGNAEFVTCSMGIAQAPLHGDNTDVLMRNADLALYASKSGGRR 424

Query: 254 RVVCFSD 260
               + D
Sbjct: 425 TFRFYQD 431


>gi|152964253|ref|YP_001360037.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216]
 gi|151358770|gb|ABS01773.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216]
          Length = 391

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 24/248 (9%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           ++   ++ ++F +T   + ++ L     +          E  ++ ++++ + L+L  +  
Sbjct: 124 LVVGPLYAAMFTSTRSMLGHLALAVAAGSALVAGIPGDGEERAMRVLAVQMVLVLSVVGL 183

Query: 88  SILKE--------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVF 133
            +L+         L ++ +R   L+  D L+GLLN      +L +             V 
Sbjct: 184 FVLRRRLDTAVALLTLARDRADDLAGHDPLTGLLNRRGLRLALEAAAAGGRGLGPTGAVL 243

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D+FK +ND  GH  GD V+  ++  L         V R+GGEEF   A  +   + A
Sbjct: 244 LDVDHFKTVNDTLGHDAGDAVLIRIAAVLAATARPTDLVARIGGEEFLVVATATEPGDVA 303

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKK 249
            L   LR  +      ++ G    +T+SAG+A    +      +  +  RAD+ LY AK 
Sbjct: 304 RLGERLRAAV------VADGGRPPVTVSAGVASCPPEPGVPCLVDELQSRADRLLYRAKS 357

Query: 250 SGRNRVVC 257
           +GRNRV  
Sbjct: 358 TGRNRVCV 365


>gi|332529343|ref|ZP_08405304.1| PAS family GGDEF/EAL protein [Hylemonella gracilis ATCC 19624]
 gi|332041141|gb|EGI77506.1| PAS family GGDEF/EAL protein [Hylemonella gracilis ATCC 19624]
          Length = 772

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 7/179 (3%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQIND 144
           S + E       + +L+  D L+GL N      +L         L+++  D+D FK +ND
Sbjct: 332 SDVTEKVRHEETLRRLAHTDSLTGLANRFMLRDTLNRLIAQKRPLALLAIDLDRFKAVND 391

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
           N GH  GD V+  ++++L     T   + RLGG+EFA      +   +A  LA  +   +
Sbjct: 392 NHGHSAGDAVLQAVAERLRAHLPTEALLARLGGDEFAVVLSEPADLPKADTLAQRVVDAL 451

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              Q       S+ I  S G+  R ++   +  ++ +AD A+Y AK+SGR R   ++ +
Sbjct: 452 A--QPVEIGSRSLRIGASVGLTTRHNEPVSLDGLLVQADMAMYAAKESGRGRWARYTPL 508


>gi|254456765|ref|ZP_05070193.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207085557|gb|EDZ62841.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 774

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 53/200 (26%), Positives = 94/200 (47%), Gaps = 13/200 (6%)

Query: 71  LVIISITISLLLGYISGSI---LKELFISYNRISQLSRIDCLSGLLNHSAF-------IS 120
           +++I  +I  ++  I+  +   ++    +  ++ ++S  D L+ L N   F       I+
Sbjct: 573 IMLIFSSILFIILRINKKLKLEIRTRKETERKLQEISITDELTHLYNRRYFNKKFPQLIN 632

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEE 179
           S     + +S    DIDYFK  ND +GH  GD+ +  +++ +         +  RLGGEE
Sbjct: 633 SAKREKKHVSFAILDIDYFKLYNDTYGHISGDEALQKIAESMQSSLSRADDYCFRLGGEE 692

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAERCHK-EPISTII 237
           F     G  ++++  L   +R+ IEN +I  ++   S ++T S G+  +         + 
Sbjct: 693 FGILFKGLDKEQSLELIEQVRQNIENLKIEHANNTASQYVTSSFGLVVKDSAITNEEELY 752

Query: 238 YRADQALYVAKKSGRNRVVC 257
             AD  LY AK  GRNRV  
Sbjct: 753 READDLLYKAKDGGRNRVCV 772


>gi|153831317|ref|ZP_01983984.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|148873202|gb|EDL71337.1| GGDEF family protein [Vibrio cholerae 623-39]
          Length = 200

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 99/190 (52%), Gaps = 4/190 (2%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-- 128
           L++  +  +L L        ++L  +  ++S L++ D L+ + N  +F   L +   +  
Sbjct: 8   LLLSIVIYTLQLRRTVRLRTQQLEEANQKLSYLAKTDSLTDIANRRSFFEYLEAEQSRSG 67

Query: 129 -LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
            L+++ FDID FK IND FGH  GD  I F+   +     +  +  R+GGEEFA  A G 
Sbjct: 68  SLTLMVFDIDDFKTINDRFGHGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGK 127

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
           + +E+  LA  + + +   +  +++  S+ +TIS G A   H     ++ + AD  +Y  
Sbjct: 128 NAEESQQLAERICQRVAEKKWVVNAQHSLSLTISLGCAFYLHPARPFSL-HDADSLMYEG 186

Query: 248 KKSGRNRVVC 257
           K++G+N+VV 
Sbjct: 187 KRNGKNQVVF 196


>gi|49476849|ref|YP_034886.1| sensory box, GGDEF family protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52144683|ref|YP_082145.1| sensory box, GGDEF family protein [Bacillus cereus E33L]
 gi|196035756|ref|ZP_03103159.1| sensory box/GGDEF family protein [Bacillus cereus W]
 gi|218901822|ref|YP_002449656.1| sensory box/GGDEF family protein [Bacillus cereus AH820]
 gi|254722098|ref|ZP_05183887.1| sensory box/GGDEF family protein [Bacillus anthracis str. A1055]
 gi|49328405|gb|AAT59051.1| sensory box, GGDEF family protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51978152|gb|AAU19702.1| sensory box, GGDEF family protein [Bacillus cereus E33L]
 gi|195991723|gb|EDX55688.1| sensory box/GGDEF family protein [Bacillus cereus W]
 gi|218539049|gb|ACK91447.1| sensory box/GGDEF family protein [Bacillus cereus AH820]
          Length = 567

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++        +  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF        + E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHKQDEMRQLATSVLSCFQA-- 250

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 251 PFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 305


>gi|85705301|ref|ZP_01036400.1| GGDEF protein [Roseovarius sp. 217]
 gi|85670174|gb|EAQ25036.1| GGDEF protein [Roseovarius sp. 217]
          Length = 256

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 94/226 (41%), Gaps = 6/226 (2%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           F   I   +      L  + L P      ++   L    +++ ++  L Y  G  L+   
Sbjct: 14  FVALICLTVLAGGALLRGLVLPPDLAARTLMPGAL----MALMLAAPLAYAIGQRLQAAH 69

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
               ++      D L+G+ + S+  ++  +  +   +++  DID+FK  ND  GH  GD 
Sbjct: 70  HRATQLEHALHHDPLTGVRSRSSLFATAPACPDRPSAVILADIDHFKGFNDRHGHAAGDL 129

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +   +  L         V RLGGEEF      +S  +    A  L      S + + + 
Sbjct: 130 ALRQFAAILTGNCRAIDLVARLGGEEFVIVMQNTSLADGHAAARRLAHRTRQSPVFLGT- 188

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            S+ +T S G+A       + T + +AD+ALY AK  GRNR   + 
Sbjct: 189 RSLTLTASFGVALLPPGGTLDTALQQADRALYRAKHDGRNRAYLYD 234


>gi|109898237|ref|YP_661492.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109700518|gb|ABG40438.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
          Length = 346

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 114/246 (46%), Gaps = 12/246 (4%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           P    +        + +T   I  IF ++     F   +++L  N+++    I  SLL+ 
Sbjct: 102 PVISYLLMGRVRGFWFSTTFIICGIFAYHWR---FIREDHLLSLNVAISTNVILSSLLMM 158

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
             +    +    +  R+  L+  D L+GL N                 +N  L++V FD+
Sbjct: 159 AFAHVYERTREENEGRLLSLAGTDPLTGLANRMKLNEGFQQLSALATRHNTPLTVVLFDL 218

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK IND  GH VGD  +  ++  L         + R GGEEFA   + +  ++     
Sbjct: 219 DLFKTINDVHGHSVGDDALRHVATFLRKNTRKTDLLARFGGEEFALIMVATPIEKGFTQV 278

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++LRK + ++  + +    I IT+SAG++      E ++ ++ +AD+ LY AK++GRN+V
Sbjct: 279 DELRKKLMSTPFSTTK-CDIKITLSAGLSTYGADGEDLNQLLNKADRRLYYAKENGRNQV 337

Query: 256 VCFSDI 261
           +   D 
Sbjct: 338 IAHDDE 343


>gi|322640804|gb|EFY37453.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
          Length = 674

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSESLIRTADTAMYNAKEGGRGQFC 390

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 391 VFSPEMNQ 398


>gi|322633664|gb|EFY30405.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
          Length = 406

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSESLIRTADTAMYNAKEGGRGQFC 390

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 391 VFSPEMNQ 398


>gi|260549050|ref|ZP_05823271.1| ggdef domain/eal domain-containing protein [Acinetobacter sp.
           RUH2624]
 gi|260407778|gb|EEX01250.1| ggdef domain/eal domain-containing protein [Acinetobacter sp.
           RUH2624]
          Length = 684

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 101/197 (51%), Gaps = 10/197 (5%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------S 124
           LV+++  I  +L         EL  +   ++ LS  D L+ L N    +           
Sbjct: 225 LVLVASFIVAVLEQRLNQRNLELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSDHR 284

Query: 125 Y-NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
           Y ++K++ ++ D+D FK +ND FGH +GD+++  ++++L         + R+GG+EF   
Sbjct: 285 YKDQKIAFLYIDLDRFKSVNDAFGHHIGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLI 344

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQ 242
           A  +  +EA  LA  + ++I++S     SG  I+I+ S GIA    H + +  ++  AD 
Sbjct: 345 AENTDTEEAMQLAEKVLQLIQDS--YQISGKEINISASLGIALFPEHGQNVQDLLMNADA 402

Query: 243 ALYVAKKSGRNRVVCFS 259
           A+ ++K+ GRN    FS
Sbjct: 403 AMLMSKEQGRNTYTVFS 419


>gi|195953545|ref|YP_002121835.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195933157|gb|ACG57857.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 916

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 75/179 (41%), Gaps = 22/179 (12%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            +LS  D L+   N       L         Y  KLSIV  D+D FK+ ND +GH  GD 
Sbjct: 737 KELSIRDPLTNAYNRRFLDEILQKEFQKALRYQTKLSIVMLDVDNFKKFNDTYGHRAGDM 796

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +  LS  +           R GGEEF      +S++ A  +AN ++  + +     +S 
Sbjct: 797 ALQHLSKVVQESIRVTDIFARYGGEEFTIVLPETSKEYATEIANRIKDALSSKMFYANSL 856

Query: 214 PS--------------IHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            S               +IT S G+A        +  +I  AD  LY AK+ G+NRVV 
Sbjct: 857 ESKDISTLNIDDIYTKYYITASFGVATFDDDAKNLEELIKVADMRLYKAKELGKNRVVY 915


>gi|126658808|ref|ZP_01729952.1| GGDEF domain [Cyanothece sp. CCY0110]
 gi|126619906|gb|EAZ90631.1| GGDEF domain [Cyanothece sp. CCY0110]
          Length = 318

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 11/184 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFK 140
           S++K L  +  ++  +SR+D L+ + N   F   L           E L ++  DID FK
Sbjct: 133 SVVKALEEANKKLEDISRLDALTQISNRLHFNDCLEREWKRAMREKEPLGLILCDIDDFK 192

Query: 141 QINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           + ND +GH  GD+ +  ++  L   V      V R GGEEFA     +    A  +   +
Sbjct: 193 RYNDTYGHLQGDRCLHDVAQGLNKAVLRGTDLVCRYGGEEFAIILPNTDFSGAEPICQRI 252

Query: 200 RKIIENSQINISSGPSI-HITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVV 256
            K I + +I  S+     ++++S G A            +I  +D+ALY AKK G+NR  
Sbjct: 253 VKQIRDLKILHSASSVCNYVSVSVGFASLVPSIHSTSDKLICLSDKALYRAKKEGKNRFQ 312

Query: 257 CFSD 260
            F D
Sbjct: 313 IFPD 316


>gi|153217131|ref|ZP_01950895.1| sensory box/GGDEF family protein [Vibrio cholerae 1587]
 gi|254224755|ref|ZP_04918371.1| sensory box/GGDEF family protein [Vibrio cholerae V51]
 gi|124113851|gb|EAY32671.1| sensory box/GGDEF family protein [Vibrio cholerae 1587]
 gi|125622818|gb|EAZ51136.1| sensory box/GGDEF family protein [Vibrio cholerae V51]
          Length = 321

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 11/180 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            + + ++     ++ QL+  D L+ L N            +      + LS +  DID F
Sbjct: 140 STDITDIVELREQLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNF 199

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND FGH  GD+V+ FL+     V     F GR+GGEEF      +  + A  LA  +
Sbjct: 200 KLINDQFGHDKGDEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQI 259

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           R+          +    HI + AG++   H +  I+ I  R+DQALY AK++GRNR   +
Sbjct: 260 RQRFAEHPFFEQNE---HIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 316


>gi|330830265|ref|YP_004393217.1| diguanylate cyclase/phosphodiesterase domain 1 [Aeromonas veronii
           B565]
 gi|328805401|gb|AEB50600.1| Diguanylate cyclase/phosphodiesterase domain 1 [Aeromonas veronii
           B565]
          Length = 377

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 117/259 (45%), Gaps = 40/259 (15%)

Query: 31  FSIFFSIFIATVIFIANIFLF--YIGLTPFYGLEYILVENLSLVIISITISLLLG----- 83
            ++   I  AT + ++ + ++  +    P Y +   ++  L+LV+I++T+  +       
Sbjct: 123 IAVRVMISSATFLMLSTLIIWQLWRHGRPDYQVAVWVLIGLNLVLIAMTLMRMFTVWGEV 182

Query: 84  ------------------YISGSILK---ELFISYNR---ISQLSRIDCLSGLLNHSAFI 119
                              +  S+L     L  + +R   +   +  D L+GLLN   F+
Sbjct: 183 IESPFQRQLFNVLPYVSMLVGSSMLTFGVLLLCNQHRALALRYQASHDPLTGLLNRRGFM 242

Query: 120 SSLGSYN--EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
             L      ++ ++V  D+D FKQIND  GH VGD+V+  +   L  +    +   R GG
Sbjct: 243 ERLARGRPAQQGALVVLDLDDFKQINDRHGHEVGDRVLEQVGLALREL--EGVLASRFGG 300

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EEF      ++ +EA      LR  +  S++       IHIT+S GIA    +    ++ 
Sbjct: 301 EEFVLLFRHATAEEAIARCQSLRVQLAASEVE-----GIHITVSMGIAHWQGEWHFDSLF 355

Query: 238 YRADQALYVAKKSGRNRVV 256
            RAD ALY AK+ G+NRV 
Sbjct: 356 SRADDALYRAKREGKNRVC 374


>gi|326943099|gb|AEA18995.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 909

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
           Y+    + E      +I+ L+  D L+ L N  AF   L           +  +++F D+
Sbjct: 459 YLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKPFAVMFLDL 518

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAIL 195
           D FK IND  GH VGD ++  ++ +L  +  + M + RL G+EF        ++ +   +
Sbjct: 519 DRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQKI 578

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
           A+ +   + N    I +   + I+ S GIA      E   +I+  AD A+Y AK  G+N 
Sbjct: 579 ADRIVAAM-NEPFEIENQH-LQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 636

Query: 255 VVCFS 259
              ++
Sbjct: 637 SSLYT 641


>gi|326385565|ref|ZP_08207199.1| hypothetical protein Y88_1763 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209899|gb|EGD60682.1| hypothetical protein Y88_1763 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 602

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 9/167 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + + +  D L+GL N      +L           + LS+V  D+D+FK+ ND FGH  GD
Sbjct: 427 LREQTIRDPLTGLFNRRYMEETLALEIVRVLRSGDPLSLVMCDVDHFKRFNDEFGHDAGD 486

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++ ++   F     + R GGEEF   A GS+  + A   + +R+ I    ++   
Sbjct: 487 AVLQAVAVEMRSRFRDGDVICRFGGEEFTIIAPGSTAADMAARVDVVRQAISELTVHQGG 546

Query: 213 GPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
                IT+S G+    +  +   ST+I  AD  LY AK+ GRNRVV 
Sbjct: 547 RTLGAITMSFGVTAWDNSMERDGSTLIKTADAGLYRAKREGRNRVVI 593


>gi|254560441|ref|YP_003067536.1| sensory box-containing diguanylate cyclase/phosphodiesterase;
           permease, PAS/PAC, GGDEF and EAL domains
           [Methylobacterium extorquens DM4]
 gi|254267719|emb|CAX23566.1| putative sensory box-containing diguanylate
           cyclase/phosphodiesterase; permease, PAS/PAC, GGDEF and
           EAL domains [Methylobacterium extorquens DM4]
          Length = 815

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
           GS + +   +   I+ L+  D L+GL N + F    G           ++ +++ D+D F
Sbjct: 363 GSDVTQRREADAHIAYLATRDPLTGLSNRAVFHDVAGEACTASMRGGPRVHLLYLDLDGF 422

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND  GH  GD ++  ++D+L         V RLGG+EFA    G    EA ILA  +
Sbjct: 423 KKVNDTAGHCAGDDLLRQVADRLCASVDANAQVFRLGGDEFAILHRGRESAEAEILAEAV 482

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
             I    +  +  G    I +S GIA        +  ++ +AD ALY AK++GR R  CF
Sbjct: 483 --IASLHRPYLIEGMQAEIGVSIGIARAPQDATELQDLMRKADLALYTAKEAGRGRWQCF 540

Query: 259 S-DIENN 264
             D+E  
Sbjct: 541 EADLERR 547


>gi|229525311|ref|ZP_04414716.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae bv.
           albensis VL426]
 gi|229338892|gb|EEO03909.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae bv.
           albensis VL426]
          Length = 685

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 10/190 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           L     S+ K   ++ ++++QL+  D L+GL N S  +  L        + +    + + 
Sbjct: 220 LASTFQSMWKGKELAESKLNQLAYYDSLTGLANRSLLLQKLSGAIETAQNSHSTGVLFYL 279

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND+ GH +GD++I  ++ ++           R+GG+EFA      S  +A  
Sbjct: 280 DLDRFKTINDSLGHTIGDQLIKAVALRMEAWTKNDYLSARIGGDEFAVLIPYLSPAKAEE 339

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRN 253
           +A  L  +I N           + T+S GI+           ++ +AD ALY AK SGRN
Sbjct: 340 VAKQLLTLISN--PYAVDDHQFYCTVSIGISVFPSVGSSNIDVLRQADTALYRAKASGRN 397

Query: 254 RVVCFSDIEN 263
           + + +     
Sbjct: 398 KFMFYEPEMQ 407


>gi|209524845|ref|ZP_03273391.1| diguanylate cyclase [Arthrospira maxima CS-328]
 gi|209494724|gb|EDZ95033.1| diguanylate cyclase [Arthrospira maxima CS-328]
          Length = 553

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 98/231 (42%), Gaps = 16/231 (6%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
           I+  +L  IG+    G  YIL  +L  V  S    +     S   +++L      +S L 
Sbjct: 319 ISAYYLESIGIIKSLGNNYILAGDLYRVYFSYK-PISPQVPSSIYIEQLERDNQYLSNLV 377

Query: 105 RIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            +D L+ + N S F  +     E        L+++  DIDYFK  ND FGH  GD  +  
Sbjct: 378 YVDELTKVANRSQFQKAFKMEWECMAIKHNPLALIVCDIDYFKLYNDTFGHLAGDVCLQK 437

Query: 158 LSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
           ++  +          + R GGEEF      +  + A  +A  +   ++   I      S+
Sbjct: 438 IAQAIQQNLQRPNDLLARYGGEEFVVLLPQTDGKGAMFVAAKICLAVKELAIASGVPKSV 497

Query: 217 H-----ITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFSD 260
                 +TIS GIA           T+   ADQALY +KK+GR+R    S+
Sbjct: 498 DSQHPVVTISIGIASIIPSSDYHPETLFMAADQALYESKKAGRDRYTMSSE 548


>gi|192359905|ref|YP_001983808.1| GGDEF domain-containing protein [Cellvibrio japonicus Ueda107]
 gi|190686070|gb|ACE83748.1| GGDEF domain protein [Cellvibrio japonicus Ueda107]
          Length = 547

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 59/183 (32%), Positives = 85/183 (46%), Gaps = 17/183 (9%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137
           +  +  ++L  + +R       D L+GLL HS         +S      E LS+V  D+D
Sbjct: 369 VRAARCRQLSDALDR-------DSLTGLLKHSRIKELVDLELSRAQRSGEPLSLVMLDLD 421

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK IND++GH  GDKVI  ++  L         +GR GGEEF          EA  L +
Sbjct: 422 HFKHINDSYGHSAGDKVIRAMAHLLRQRLRKTDSLGRYGGEEFLIVLPRCGPDEAFKLVD 481

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +R+  +        G    +T SAGIA           T++  AD+ALY AK  GR+RV
Sbjct: 482 KVRRHFQEIPFQH-QGCHFRVTTSAGIASCGASGAMAADTLLQAADEALYEAKHQGRDRV 540

Query: 256 VCF 258
             +
Sbjct: 541 CIY 543


>gi|114047576|ref|YP_738126.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113889018|gb|ABI43069.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 937

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 11/177 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           +     +  R+  ++  D L+ L N +     L          +   +++F D+D FKQI
Sbjct: 762 ITRRIAAEKRLLHVASHDALTQLPNRALLDDRLSQALLAHRRDHSHFALLFIDLDNFKQI 821

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRK 201
           ND +GHPVGD ++  ++  L         V R GG+EF            A  +A+++  
Sbjct: 822 NDQYGHPVGDALLLQVAGLLTKAIRHSDTVARFGGDEFVILLNRVQDLDAATQVADNILH 881

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +  S      G ++ + IS G+       +    ++ +ADQ +Y AK +G      
Sbjct: 882 SL--SSPFSVEGVTVEVAISIGVVIYPRDGDTAIDLLKKADQLMYQAKTAGGRCYRV 936


>gi|116049036|ref|YP_792162.1| hypothetical protein PA14_50060 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115584257|gb|ABJ10272.1| hypothetical protein PA14_50060 [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 398

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 59/170 (34%), Positives = 85/170 (50%), Gaps = 10/170 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
             ++  L+  D L+GL N   F          +    + LS++  D+D+FK IND +GHP
Sbjct: 219 NRQLEYLAGHDPLTGLFNRREFDQLVLMELARIARQPQPLSLLMVDLDHFKYINDRYGHP 278

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+VI   ++ L     +   V RLGGEEF      ++EQ+A  LA  LR+ +E + + 
Sbjct: 279 FGDEVIRHAANLLRGNTRSSDSVARLGGEEFLLLLPDTAEQQARSLAEKLRERLEGTPLA 338

Query: 210 ISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
              G  + +T S G+A            +   ADQALY AK SGRNRV  
Sbjct: 339 TQDGV-LCLTASFGVASLDGGGQASYEQLYSAADQALYRAKSSGRNRVEV 387


>gi|306845944|ref|ZP_07478511.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1]
 gi|306273579|gb|EFM55424.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1]
          Length = 461

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 9/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L  S  R    S  D L+GL N           ++      + LSI+  D+D+FKQ+N+ 
Sbjct: 285 LRQSMERTITQSVTDGLTGLHNRHYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQ 344

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH  GD V+   S +L         + R GGEEF      +  Q A  +A  +R I+  
Sbjct: 345 YGHGAGDHVLREFSARLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRGIVAE 404

Query: 206 SQINISSGP-SIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   + +G     +T+S G+ A R   + +  +  RA  AL  AK+SGRNR+V 
Sbjct: 405 APFVLDNGKRRASLTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIVL 458


>gi|288919084|ref|ZP_06413424.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EUN1f]
 gi|288349524|gb|EFC83761.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EUN1f]
          Length = 1302

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 9/182 (4%)

Query: 84   YISGSILK-----ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDY 138
            YI G ++            +++   +R D L+ L N +A + +L       +IVF D+D+
Sbjct: 1119 YIGGRLMTIHDVTTRRNMQDQLLHQARYDPLTSLPNRTALLDALRPGAGTTAIVFVDLDH 1178

Query: 139  FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
            FKQIND FGH  GD V++ ++ +LV          RLGG+EF        +  A  +A  
Sbjct: 1179 FKQINDTFGHEAGDVVLSTVARRLVHACRPGDTAYRLGGDEFVVVLGEVGQDRAVAVARR 1238

Query: 199  LRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV-V 256
            LR+ +     +      I ++ + G+A  R      + ++  AD A+Y AK + R  V V
Sbjct: 1239 LRQALAAPVRH--GDDLIGLSATVGVALTRASDTDPNDLLTTADSAMYRAKHTARGTVGV 1296

Query: 257  CF 258
             F
Sbjct: 1297 AF 1298



 Score =  158 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 83/189 (43%), Gaps = 25/189 (13%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           +     +R++  +  D L+G+ N +A ++++ S        N  + ++F D+D FK +ND
Sbjct: 434 KRKDLQDRLTDQAHTDGLTGVANRTAVMAAVDSALAAGVATNASVFLLFVDLDGFKTVND 493

Query: 145 NFGHPVGDKVIAFLSDQLVVVFG----------TPMFVGRLGGEEFAAAALGSSEQEAAI 194
             GH VGD+V+  ++ +L                   VGRL G+EF     G     A  
Sbjct: 494 THGHQVGDEVLRIVARRLHDAVRTGSDRAGNSPREDVVGRLSGDEFVVLLQGVRRAAAIR 553

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAK 248
           +A  +  ++   +     G  + ++ S G++                ++ +AD A+Y AK
Sbjct: 554 VAARVVDLLA--RPMTVDGRQLRVSASVGVSALVRGGSPRGGVSPDQLVRQADHAMYRAK 611

Query: 249 KSGRNRVVC 257
           + G +R V 
Sbjct: 612 RGGGSRWVI 620


>gi|269958888|ref|YP_003328677.1| response regulator [Anaplasma centrale str. Israel]
 gi|269848719|gb|ACZ49363.1| response regulator [Anaplasma centrale str. Israel]
          Length = 456

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 14/187 (7%)

Query: 81  LLGYISGSILKELFISYNRIS-----QLSRIDCLSGLLNHSAFI-------SSLGSYNEK 128
           LL   +  + ++ +    R+      ++S  D L+G  N   F        +      + 
Sbjct: 266 LLARANVQVKRKRYQDALRMHLEDNAEMSITDPLTGCYNRRYFDMHFQNIVNEARDKGKD 325

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS++  D+D+FK++ND FGH VGD+++  L  ++         + R GGEEF      + 
Sbjct: 326 LSVMIIDVDHFKKVNDTFGHTVGDELLQQLRKRIFDNIRISDLLARFGGEEFVVILPETG 385

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
             +A   A  LR+ +     N S G  +  T+S G+AE    E     + RAD+ LY AK
Sbjct: 386 IDQAVTAAERLRQKVAEEPFNTSGGA-LDKTVSIGVAEFRPSEEAKDFLNRADKCLYSAK 444

Query: 249 KSGRNRV 255
           ++ RN V
Sbjct: 445 ET-RNAV 450


>gi|170681077|ref|YP_001743896.1| RNase II stability modulator [Escherichia coli SMS-3-5]
 gi|218699998|ref|YP_002407627.1| RNase II stability modulator [Escherichia coli IAI39]
 gi|218704813|ref|YP_002412332.1| RNase II stability modulator [Escherichia coli UMN026]
 gi|293404828|ref|ZP_06648820.1| RNase II stability modulator [Escherichia coli FVEC1412]
 gi|293409680|ref|ZP_06653256.1| gmr [Escherichia coli B354]
 gi|298380470|ref|ZP_06990069.1| gmr [Escherichia coli FVEC1302]
 gi|300897346|ref|ZP_07115776.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1]
 gi|331662701|ref|ZP_08363624.1| protein gmr [Escherichia coli TA143]
 gi|331672815|ref|ZP_08373601.1| protein gmr [Escherichia coli TA280]
 gi|170518795|gb|ACB16973.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli SMS-3-5]
 gi|218369984|emb|CAR17758.1| modulator of Rnase II stability [Escherichia coli IAI39]
 gi|218431910|emb|CAR12795.1| modulator of Rnase II stability [Escherichia coli UMN026]
 gi|284921168|emb|CBG34234.1| putative signal transduction protein [Escherichia coli 042]
 gi|291427036|gb|EFF00063.1| RNase II stability modulator [Escherichia coli FVEC1412]
 gi|291470148|gb|EFF12632.1| gmr [Escherichia coli B354]
 gi|298277912|gb|EFI19426.1| gmr [Escherichia coli FVEC1302]
 gi|300358896|gb|EFJ74766.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1]
 gi|331061123|gb|EGI33087.1| protein gmr [Escherichia coli TA143]
 gi|331070036|gb|EGI41405.1| protein gmr [Escherichia coli TA280]
          Length = 661

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|158424035|ref|YP_001525327.1| REC protein [Azorhizobium caulinodans ORS 571]
 gi|158330924|dbj|BAF88409.1| REC protein [Azorhizobium caulinodans ORS 571]
          Length = 389

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 6/176 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + + ++   + +L+  D ++ LLN   F +          K S++  D+D  + IN+  G
Sbjct: 197 ERMNLAQRELVRLATRDAMTDLLNRRTFFARAEDMIHNRTKASVILLDVDLLRHINETHG 256

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           +P GD V+  ++  +    G      R+GGEEFA    G SE EA      LR  I +  
Sbjct: 257 YPGGDTVVMKVAQSMKRYQG---MAARIGGEEFAVLLPGLSEAEAVEEGERLRWSIADQA 313

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           + + +G  I +T S G+AER   + +   +  AD ALY AK  GRNRVV   +I +
Sbjct: 314 VTMPNGQLITVTASLGVAERKPDDNVDEWMESADIALYAAKAGGRNRVVMSEEIMD 369


>gi|116252228|ref|YP_768066.1| GGDEF family sensory box protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256876|emb|CAK07970.1| putative transmembrane GGDEF family sensory box protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 391

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 15/234 (6%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS 88
           +  SI+ +  ++ ++ +  IF     L P Y    +++ + ++ +  + +          
Sbjct: 155 LSASIWVATSLSALVVVGFIFPDDAPLPPRYAFFLLIICHFAVALFVLVLV--------- 205

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-SIVFFDIDYFKQINDNFG 147
                  +  ++ +L+  D L+G+ N   F +SL        + V  DID FK++ND +G
Sbjct: 206 ----QERTEEKLIRLANTDMLTGIPNRQHFFNSLPKCLAPGDAFVLIDIDLFKRVNDMYG 261

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  ++  +     +    GRLGGEEF+    G ++  A  LA  +R+ +    
Sbjct: 262 HDKGDVVLTNVARTIARSAPSSCVFGRLGGEEFSLFLRGQTQSSAFALAERIREAVNAVS 321

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           + +  G  +  ++SAG+A          +  RADQALY+AK  GRNRV  FS +
Sbjct: 322 L-VFEGNQVTPSVSAGVALWEAGLTEQDVQKRADQALYIAKNKGRNRVELFSSV 374


>gi|78778089|ref|YP_394404.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78498629|gb|ABB45169.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM
           1251]
          Length = 555

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 84/177 (47%), Gaps = 13/177 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S + +  I    +   +  D L+ + N   +   +         Y   LS+V FD+D FK
Sbjct: 384 SNITDEKIYQKELEHTNITDPLTKIRNRYCYNKQIKKECASSNRYFYPLSLVIFDMDNFK 443

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            INDN+GH VGDKV+   +  +           R+GGEEFA      ++ +A  LA+ +R
Sbjct: 444 NINDNYGHDVGDKVLIEYTKLITTCLRDSDIFCRIGGEEFALILPHVNKSDAYKLADKIR 503

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             ++           + IT+S G+ E    E +     RAD+ALY AK +GRNRVV 
Sbjct: 504 SKVQEH------NQIVAITMSFGVTEYKKDEDLELTFKRADKALYEAKNAGRNRVVA 554


>gi|13474448|ref|NP_106016.1| hypothetical protein mlr5331 [Mesorhizobium loti MAFF303099]
 gi|14025201|dbj|BAB51802.1| mlr5331 [Mesorhizobium loti MAFF303099]
          Length = 381

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 94/182 (51%), Gaps = 13/182 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143
           +E+ ++  +    +  D L+ L N  AF       ++  G+  E   ++F D+D FK++N
Sbjct: 187 REIEVAKQQSDHSANHDALTDLPNRRAFHNELKSVVARCGATGEAAGLLFIDLDRFKEVN 246

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE---QEAAILANDLR 200
           D  GH  GD ++  +S QL  +  +  FV RLGG+EFA      +E   Q+A  +A  + 
Sbjct: 247 DTLGHEAGDALLQRVSSQLRSILRSADFVARLGGDEFAFLFSADTELARQKAVRVAERIL 306

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +   ++   +G  I +  + G+A          T+I  AD+ +YV KKSGRNR+V  S
Sbjct: 307 ERLR-IKVPTPNGA-IQVGCTVGVAMYPAEAADCDTLIALADRLMYVGKKSGRNRLVTAS 364

Query: 260 DI 261
           ++
Sbjct: 365 EM 366


>gi|291570749|dbj|BAI93021.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 1208

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 52/196 (26%), Positives = 87/196 (44%), Gaps = 16/196 (8%)

Query: 84  YISGSI--LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVF 133
           Y  GSI  +  L  +  ++   +  D L+ L N + F+  L           N + +I+F
Sbjct: 749 YYEGSIMEITHLKETEAKLRHSASHDSLTDLWNRAFFLDKLNDSLRKCKTLDNYQFAILF 808

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEA 192
            D+D F+ IND+ GH +GD+++  +S +L         + RLGG+EF       +  QEA
Sbjct: 809 LDLDGFQFINDSLGHAIGDQLLIEISKRLTDCV-DSHILARLGGDEFTILLENITDIQEA 867

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKS 250
             +A  +++ +    I +     I    S GI E    + E    ++  AD A+Y AK+ 
Sbjct: 868 IDVAERIQEAL-KLPIFLGDNQ-IFTGASIGIVEGNNSNYESSPEVLRDADTAMYRAKRQ 925

Query: 251 GRNRVVCFSDIENNTC 266
           G+   V F        
Sbjct: 926 GKGCYVVFDSTMRTNA 941


>gi|229530464|ref|ZP_04419852.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           12129(1)]
 gi|229332237|gb|EEN97725.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           12129(1)]
          Length = 685

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 10/190 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           L     S+ K   ++ ++++QL+  D L+GL N S  +  L        + +    + + 
Sbjct: 220 LASTFQSMWKGKELAESKLNQLAYYDSLTGLANRSLLLQKLSDAIETAQNSHSTGVLFYL 279

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND+ GH +GD++I  ++ ++           R+GG+EFA      S  +A  
Sbjct: 280 DLDRFKTINDSLGHTIGDQLIKAVALRMEAWTKNDYLSARIGGDEFAVLIPYLSPAKAEE 339

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRN 253
           +A  L  +I N           + T+S GI+           ++ +AD ALY AK SGRN
Sbjct: 340 VAKQLLTLISN--PYAVDDHQFYCTVSIGISVFPSVGSSNIDVLRQADTALYRAKASGRN 397

Query: 254 RVVCFSDIEN 263
           + + +     
Sbjct: 398 KFMFYEPEMQ 407


>gi|15615598|ref|NP_243902.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|10175658|dbj|BAB06755.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 567

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 11/175 (6%)

Query: 101 SQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
            Q S  D L+GL N    + +L       +   SI+  D+D+FK+IND +GH  G+ V+ 
Sbjct: 388 KQESVRDPLTGLYNFRYMMEALKKTVNEADFPFSIILLDLDHFKKINDTYGHQSGNDVLE 447

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL------RKIIENSQINI 210
            ++D++  +      + R GGEEF        E++A  +   L      R I+  S + +
Sbjct: 448 AVADRMRKICPDNSVISRYGGEEFVILLPHHGEEDARQVGILLQQDFSSRSILIRSDLLV 507

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYV-AKKSGRNRVVCFSDIENN 264
                I +T S GIAE   K+    +I +AD+A+Y  AK  GRNRV  +SDI+  
Sbjct: 508 GETVDIKVTASFGIAEAGKKDHAMDLIRKADRAMYNGAKSKGRNRVATYSDIKQE 562


>gi|299535394|ref|ZP_07048716.1| inner membrane protein [Lysinibacillus fusiformis ZC1]
 gi|298729155|gb|EFI69708.1| inner membrane protein [Lysinibacillus fusiformis ZC1]
          Length = 505

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 57/219 (26%), Positives = 110/219 (50%), Gaps = 11/219 (5%)

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCL 109
           + Y+    F  +E  L +N     I ++I+LL  +I   ++ ++    ++   L+  D L
Sbjct: 283 IVYVKFINFTKMEA-LQKNTKQFWILLSIALLTSFIMLLVINKIL---SKTIHLATFDPL 338

Query: 110 SGLLNHSAFISSLGSYNEKL-----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           +G+ N + +I  + S   K       ++  D+D FKQ+ND FGH  GD ++   +  L  
Sbjct: 339 TGVYNRATYIRKIDSLLRKRKMNVPGLLLIDLDNFKQVNDQFGHVEGDHILIETAKILKH 398

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI-TISAG 223
           V     FV R GG+EFA     ++E++   +A D+   I + + +  +     + ++S G
Sbjct: 399 VVKQSGFVVRFGGDEFAIVLYDTTEEQMQHMAEDILTQIRSVRYDGQASEKWSVLSVSMG 458

Query: 224 IAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261
            A   H E    ++  RAD+ALY +K +G+++   ++++
Sbjct: 459 GAIYNHAEDTEMSLFERADKALYQSKNAGKDQYSSYAEV 497


>gi|302879552|ref|YP_003848116.1| diguanylate cyclase with PAS/PAC and GAF sensors [Gallionella
           capsiferriformans ES-2]
 gi|302582341|gb|ADL56352.1| diguanylate cyclase with PAS/PAC and GAF sensors [Gallionella
           capsiferriformans ES-2]
          Length = 462

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 11/179 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           S + E   +   I + +  D L+ L N   F   L             L+++F D+D FK
Sbjct: 284 SDVTEKKQADEIIWRQANYDMLTQLPNRRLFCDRLEHEIRGAHRAGCLLALLFIDLDLFK 343

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
           ++ND+ GH  GD ++  ++++L         V R+GG+EF A        ++   +A  +
Sbjct: 344 EVNDSLGHEAGDALLVKVAERLTASVRESDTVARMGGDEFTAILPQIDSLEDVERVAALI 403

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            K +  S+    +G  ++I+ S G+A         + ++ +AD A+YVAK+ GR     
Sbjct: 404 VKAL--SEPFEVNGAIVNISASVGVAIYPRDAKNTTELLSQADSAMYVAKEQGRGCYRM 460


>gi|238759841|ref|ZP_04620997.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia aldovae ATCC 35236]
 gi|238701902|gb|EEP94463.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia aldovae ATCC 35236]
          Length = 662

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + +   +  R+  L+  D ++GL N  A    +        +  + I++ D+D FK
Sbjct: 218 SGTDITKERRAQERLRILANTDMITGLPNRHAIHERINSAIQTRSDTSVGIIYLDLDNFK 277

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND++GH  GD+++  +S  ++        + RLGG+EF      ++       A  + 
Sbjct: 278 KVNDHYGHMFGDRLLKDVSLAILSCLDDNEMLARLGGDEFIVLVENATLSRLEATAQRI- 336

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++   S GIA    H + +  II  AD A+Y AK+ G+     F
Sbjct: 337 --LTRMKLPFRIGLIEVYTGCSIGIALCPEHGDTLENIIRSADTAMYTAKEHGKQTYSIF 394

Query: 259 SDIENN 264
           S   N 
Sbjct: 395 SQEMNK 400


>gi|228911140|ref|ZP_04074946.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200]
 gi|228848503|gb|EEM93351.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200]
          Length = 909

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
           Y+    + E      +I+ L+  D L+ L N  AF   L           +  +++F D+
Sbjct: 459 YLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKPFAVMFLDL 518

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAIL 195
           D FK IND  GH VGD ++  ++ +L  +  + M + RL G+EF        ++ +   +
Sbjct: 519 DRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQKI 578

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
           A+ +   + N    I +   + I+ S GIA      E   +I+  AD A+Y AK  G+N 
Sbjct: 579 ADRIVAAM-NEPFEIENQH-LQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 636

Query: 255 VVCFS 259
              ++
Sbjct: 637 SSLYT 641


>gi|160901332|ref|YP_001566914.1| diguanylate cyclase [Delftia acidovorans SPH-1]
 gi|160366916|gb|ABX38529.1| diguanylate cyclase [Delftia acidovorans SPH-1]
          Length = 386

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 104/218 (47%), Gaps = 10/218 (4%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH- 115
           P    E  L   LS++ + +  S+   + +  ++++L     ++  LSRID L+ L +  
Sbjct: 133 PVPDWEASLAVQLSMLPLLLLHSVFSSWSTRQLVRKLARQNVKLQVLSRIDPLTTLYSRD 192

Query: 116 ------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
                  A +           ++  DID+FK+IND+FGH VGD+V+  +   +     + 
Sbjct: 193 YWWQKARAALRDYRQTQASACLLIVDIDHFKRINDSFGHTVGDEVLQAIGLTIRHCLRSH 252

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
              GR GG+EFA   + +   +A  +A  +R  +  SQ+ +   P + ++ S G+A    
Sbjct: 253 DAAGRYGGDEFAVLCMHTQLDDAYAVALRIRNQL--SQLRVREHPQLRVSASIGVAAADP 310

Query: 230 K-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
               +   I  AD ALY AK +GR++V+  + +   + 
Sbjct: 311 SFLSVKDWINAADSALYSAKDAGRDQVIPAAPLMAGSA 348


>gi|30023334|ref|NP_834965.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 14579]
 gi|218231224|ref|YP_002370076.1| sensory box/GGDEF family protein [Bacillus cereus B4264]
 gi|229050972|ref|ZP_04194521.1| Sensory box/GGDEF [Bacillus cereus AH676]
 gi|229153464|ref|ZP_04281642.1| Sensory box/GGDEF [Bacillus cereus m1550]
 gi|29898895|gb|AAP12166.1| Sensory box/GGDEF family protein [Bacillus cereus ATCC 14579]
 gi|218159181|gb|ACK59173.1| sensory box/GGDEF family protein [Bacillus cereus B4264]
 gi|228630068|gb|EEK86719.1| Sensory box/GGDEF [Bacillus cereus m1550]
 gi|228722349|gb|EEL73745.1| Sensory box/GGDEF [Bacillus cereus AH676]
          Length = 909

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
           Y+    + E      +I+ L+  D L+ L N  AF   L           +  +++F D+
Sbjct: 459 YLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKPFAVMFLDL 518

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAIL 195
           D FK IND  GH VGD ++  ++ +L  +  + M + RL G+EF        ++ +   +
Sbjct: 519 DRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQKI 578

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
           A+ +   + N    I +   + I+ S GIA      E   +I+  AD A+Y AK  G+N 
Sbjct: 579 ADRIVAAM-NEPFEIENQH-LQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 636

Query: 255 VVCFS 259
              ++
Sbjct: 637 SSLYT 641


>gi|77360935|ref|YP_340510.1| GGDEF domain-containing protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875846|emb|CAI87067.1| conserved protein of unknown function ; putative GGDEF domain
           protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 298

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 61/199 (30%), Positives = 93/199 (46%), Gaps = 13/199 (6%)

Query: 69  LSLVIISITISLLLGYISGSILKELFIS--YNRISQLSRIDCLSGLLNHSAFISSL---- 122
            S   +S+ I   L Y   ++L  L  +  YNR+ +L+  D L+GL N S F  +L    
Sbjct: 104 FSKYPLSVAIEKKLQYFHSALLYPLRNAIMYNRVLKLATKDALTGLSNRSQFNDTLLQKL 163

Query: 123 ---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                Y    S++  D+D FKQ+NDNFGH VGD V+   +  L         V R GG+E
Sbjct: 164 ENCRRYQRPFSLMLLDLDSFKQVNDNFGHKVGDDVLKEFALVLNSSIRGTDSVFRFGGDE 223

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           FA            ++A  + + ++NS+I         +T S G      ++  + +  R
Sbjct: 224 FAILIEDPEFTTNKVIAERIMQRVKNSKIM----AQYSVTTSIGFTLASSQDTENDVFSR 279

Query: 240 ADQALYVAKKSGRNRVVCF 258
           AD+ LY AK +GRN    +
Sbjct: 280 ADKGLYKAKAAGRNCAKAY 298


>gi|302878381|ref|YP_003846945.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
 gi|302581170|gb|ADL55181.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
          Length = 1013

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 12/186 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           +   +     + + I +L+  D L+ L N       L              +++F D+D 
Sbjct: 566 TFRDITANKAAESEIKKLAFYDPLTLLPNRRLLTDRLNHALASSARNRNIGALLFIDLDN 625

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE--QEAAILA 196
           FK +ND  GH +GD ++  ++ +L         + RLGG+EF       SE   +AA  A
Sbjct: 626 FKTLNDTLGHDMGDALLKQVALRLKSCIREDDTLARLGGDEFVVILENLSELAMDAATKA 685

Query: 197 NDLRKII--ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
             + + I    +Q+   +    H   S G+     H   I  ++ +AD A+Y +KKSGRN
Sbjct: 686 ELIGEKILAALNQVYPLASQEYHGAASIGVTLFAGHALSIDELMKQADIAMYQSKKSGRN 745

Query: 254 RVVCFS 259
            +  F 
Sbjct: 746 TLRFFD 751


>gi|242238178|ref|YP_002986359.1| diguanylate cyclase [Dickeya dadantii Ech703]
 gi|242130235|gb|ACS84537.1| diguanylate cyclase [Dickeya dadantii Ech703]
          Length = 547

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 59/169 (34%), Positives = 82/169 (48%), Gaps = 11/169 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
           L     R+S  +  D L    N       +  L +  +K++++  DID+FKQIND FGH 
Sbjct: 379 LHKRIGRLSSEAHTDPL----NRRGMQESMEELRNEYKKIAVIAVDIDHFKQINDTFGHD 434

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD VI  LS      F     + R+GGEEF     G+    A I+A  LR  + N+   
Sbjct: 435 TGDDVIRKLSQLFRQNFRKTDLICRIGGEEFLILLPGADIHIATIIAERLRNNVANASYL 494

Query: 210 ISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            ++ P   +TIS G+        P+   I  AD ALY AKK GRN+V+ 
Sbjct: 495 PNAHP---VTISIGVTTFNPQTSPLDKAIKIADNALYKAKKGGRNKVMV 540


>gi|288942167|ref|YP_003444407.1| PAS/PAC sensor-containing diguanylate cyclase [Allochromatium
           vinosum DSM 180]
 gi|288897539|gb|ADC63375.1| diguanylate cyclase with PAS/PAC sensor [Allochromatium vinosum DSM
           180]
          Length = 326

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 11/172 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ + S  D L+G+ N   F   L             ++++  D+D FK  ND+FGH  G
Sbjct: 140 RLIESSYQDPLTGVGNRRRFDQDLAQRFRQAKDRQRSIAMLMIDVDNFKAYNDHFGHQGG 199

Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D  +  ++  L   +      V R GGEEFA     +    A  +A  LR  +E   +  
Sbjct: 200 DACLIQVARTLRDGLRRDGDRVSRYGGEEFAILLTDTDGPSACAVAERLRLAVEQLDLPH 259

Query: 211 SSGPSI-HITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + P I  +++S GIA      ++    ++ +AD ALY AK +GRN  + + 
Sbjct: 260 PAAPGIGRVSVSIGIAAMVPSDEQLCYILVAQADLALYTAKDAGRNGCMWYD 311


>gi|256828836|ref|YP_003157564.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578012|gb|ACU89148.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfomicrobium baculatum DSM 4028]
          Length = 1262

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 12/187 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYF 139
             + E      +I+  +  D L+GL N S F   LG   E+         + +  D++ F
Sbjct: 811 QDISERKEFERQITHQAFHDSLTGLPNRSLFRERLGRAVERTKRRPDYHFAAMLIDLNKF 870

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K +ND+ GH  GD ++  ++ +L     +   V RLGG+EFA       + +E   +A+ 
Sbjct: 871 KWVNDSLGHQAGDALLVEIASRLKSCVRSVDTVARLGGDEFAILLEEFRTNKEVISVASR 930

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++  +  +   + +G  I    S GI  +         I+  AD A+Y AK+ GR  +V 
Sbjct: 931 IQNEVRRA--FLWNGKEIVSGASVGIVLQTRDCAGAEDILRDADIAMYKAKERGRGHLVF 988

Query: 258 FSDIENN 264
            + +   
Sbjct: 989 HNRMRQE 995


>gi|254228896|ref|ZP_04922318.1| ggdef domain protein [Vibrio sp. Ex25]
 gi|151938573|gb|EDN57409.1| ggdef domain protein [Vibrio sp. Ex25]
          Length = 480

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 96/203 (47%), Gaps = 5/203 (2%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
            Y L  + +    + + ++     L  +     ++L I+  ++ +++  D L+ L N   
Sbjct: 264 VYPLYLLPIAIFVMAVATLYHIFALKRMVALRTRQLTIANQQLLEMTLTDSLTKLYNRRH 323

Query: 118 FISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
            I  L         L+++ FDID FK IND +GH VGD+ I  +++    +    M + R
Sbjct: 324 LIEQLALLNHLQRSLTVMVFDIDDFKSINDQYGHLVGDRAIVAVAETAKSMTDERMTLAR 383

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
           +GGEEFA      SE+EA   A  L K +    I I  G +IH++IS G A       I 
Sbjct: 384 IGGEEFALVTASLSEREARNFAQMLCKAVYEQPI-ILGGQAIHLSISLGCAYYPEFTHIV 442

Query: 235 TIIYRADQALYVAKKSGRNRVVC 257
            +   ADQ +Y  K  G+NR V 
Sbjct: 443 NL-QDADQLMYQGKSEGKNRAVF 464


>gi|300783866|ref|YP_003764157.1| GGDEF domain-containing diguanylate cyclase [Amycolatopsis
           mediterranei U32]
 gi|299793380|gb|ADJ43755.1| GGDEF domain-containing diguanylate cyclase [Amycolatopsis
           mediterranei U32]
          Length = 434

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 81/193 (41%), Gaps = 20/193 (10%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--------SAFISSLGSYNEK 128
            +  LL      ++K+L I+       +  D  +GL N              +  S    
Sbjct: 243 IVPPLLVLHRAVLIKQLEIA-------ATTDEKTGLFNTTGWHLLASRELARAQRSTRST 295

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
             ++  D+DYFK IND  GH  GD V+  ++  +         VGR GGEEF        
Sbjct: 296 FGVLMIDLDYFKLINDEHGHLAGDTVLRAVAATIKSAVRDYDSVGRFGGEEFVVLLPDIG 355

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIH----ITISAGIAERCHKEP-ISTIIYRADQA 243
                 +A  +R  IE+ ++    G  I     ++ S G+A        +  ++  AD+A
Sbjct: 356 PAAVLAVAERIRSAIESLRVEYEDGSRIRAIGGLSASIGVATYPDGGTAVDRLLQAADKA 415

Query: 244 LYVAKKSGRNRVV 256
           LY AK +GRN+VV
Sbjct: 416 LYRAKDAGRNQVV 428


>gi|262375972|ref|ZP_06069203.1| predicted protein [Acinetobacter lwoffii SH145]
 gi|262309066|gb|EEY90198.1| predicted protein [Acinetobacter lwoffii SH145]
          Length = 465

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 60/189 (31%), Positives = 91/189 (48%), Gaps = 14/189 (7%)

Query: 81  LLGYISG--SILKELFISYNRISQLSRI-----DCLSGLLNHSAFISSLGSY-------N 126
           +LG I     + +E+ +  +++ Q++       D L+ LLN     + +          +
Sbjct: 261 MLGLIQRIRDLNREIQLLVDQLFQVAEYIESGNDSLTQLLNRRYLNTIISREITFSRKNH 320

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             LS++  D DYFK IND FGH  GD  + FL++ L        +  R+GGEEF    + 
Sbjct: 321 TPLSLLAIDADYFKSINDKFGHAAGDLALKFLAEALQKYSQGSDYAFRVGGEEFLLLLVD 380

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
           + E+ A  +A  +RK IEN  IN + G     T+S G             +  AD ALY+
Sbjct: 381 TDEKRALNIAESIRKYIENGMINSAQGQQFKFTVSIGCVLYDGHPDYQRFLNAADSALYM 440

Query: 247 AKKSGRNRV 255
           AK +GRNRV
Sbjct: 441 AKNNGRNRV 449


>gi|213418034|ref|ZP_03351111.1| putative membrane domain involved in signal transduction;
           Diguanylate cyclase/phosphodiesterase domain 1
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 441

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 115/273 (42%), Gaps = 21/273 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIA--------NIFLFYIGLTPFYGL 61
           ++WL      E           ++   I IA + +          N  + + G+   +  
Sbjct: 135 ALWLTFRLRNEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLA 194

Query: 62  EYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
             + V  L+++ I++ +SL    +      +   L  +   ++QL+  D L+ L N    
Sbjct: 195 VLVSVVALTILGITLLVSLFDARLQARTALLASSLAQANQELAQLALHDTLTRLPNRVLL 254

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L          +   +++F D+D FK +ND +GH +GDK++  ++ +L         
Sbjct: 255 EDRLEQAISKANRESTSFALLFMDLDGFKAVNDAYGHDIGDKLLVAVTHRLNQPLSGQFT 314

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF   A  S+  EAA LA+ L   I+           + +T+S GIA      
Sbjct: 315 LARIGGDEFVLLAEVSAPDEAASLASALVHSIDA--PFTIDPYELVVTLSVGIALYPLDG 372

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +    +++ AD A+Y  K +GRN    F    N
Sbjct: 373 KNERELMFNADAAMYHTKHTGRNGYHFFQPSMN 405


>gi|209525668|ref|ZP_03274205.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira maxima CS-328]
 gi|209493837|gb|EDZ94155.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira maxima CS-328]
          Length = 592

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 60/270 (22%), Positives = 116/270 (42%), Gaps = 21/270 (7%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV 72
           +C E           +I+ S    +F     F A    +   +T  + +E +LV   + +
Sbjct: 67  VCKELKNNQTLAKVPVIFLSALNDVFDKVKAFGAGGVDY---ITKPFQMEEVLVRVQNHL 123

Query: 73  II------SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
           ++       + ++  L        ++L I+  ++ +++  D L+ L N + F+  +    
Sbjct: 124 MLKEAEKKILELNTELEARVKERTQQLQIANYKLLEMALHDPLTKLPNRALFMDKISLVI 183

Query: 123 ----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                  N   +++F D D FK +ND+ GH VGD+++  + D++  +      + RLGG+
Sbjct: 184 KSVKEGNNHGFAVLFMDCDRFKVVNDSLGHTVGDELLIAIGDRIQKILKNNDLLSRLGGD 243

Query: 179 EFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTI 236
           EFA      +E E    LA+ + +++ +    I S   I I +S G+       E    +
Sbjct: 244 EFAIIVHDVNEIEPVRNLADSILEVM-SCPFQIYS-REIFINMSIGVVLSNSNYEQPEHL 301

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           +  AD A+Y AK  GR +   F    +   
Sbjct: 302 LRDADTAMYRAKALGRGQYHIFDPAMHKEA 331


>gi|121608321|ref|YP_996128.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Verminephrobacter eiseniae
           EF01-2]
 gi|121552961|gb|ABM57110.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Verminephrobacter eiseniae EF01-2]
          Length = 859

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 93/205 (45%), Gaps = 21/205 (10%)

Query: 78  ISLLLGYISG-----SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSY 125
           I  L G ++G       + E   +   I +L+  D L+GL N           I++    
Sbjct: 389 IRDLHGRVTGVLGVCRDITERKRAAQEIERLAFYDALTGLPNRRLLLDRLQRSIATCQRT 448

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA- 184
           ++  +++F D+D FK +ND  GH +GD+++A ++ +LV        V R GG+EF     
Sbjct: 449 HKLGALLFIDLDNFKDLNDTLGHDMGDQLLAQVATRLVASVRAADTVARFGGDEFVVMLE 508

Query: 185 -----LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIY 238
                L ++  +A ++A+ L   + N    +  G     T+S G+     +   +  ++ 
Sbjct: 509 ALAPDLRTATAQAEMVADKLLASL-NQPFALDGGQHYS-TLSIGVTLFGEQRLSVDELLK 566

Query: 239 RADQALYVAKKSGRNRVVCFSDIEN 263
           RAD ALY AK +GRN    F     
Sbjct: 567 RADLALYQAKAAGRNTQRFFDPDMQ 591


>gi|150019427|ref|YP_001311681.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052]
 gi|149905892|gb|ABR36725.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052]
          Length = 360

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 66/202 (32%), Positives = 101/202 (50%), Gaps = 10/202 (4%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFIS--YNRISQLSRIDCLSGLLNHSAFIS 120
           YI+VE+     ++I + L L  I+  I   +  S  Y  + ++++ D L G+ N   F  
Sbjct: 152 YIVVEHNLYKFMNIELKLFLRSIANQIAIAIENSLLYKELEKINQRDPLLGIYNRKYFFE 211

Query: 121 SLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            L        N+K +IV  DID FK++ND +GH  GDK++   ++ +           R 
Sbjct: 212 FLEKKENRKLNDKFAIVMIDIDDFKKVNDTYGHQFGDKILVNTANIIKCGIDKNDIFARY 271

Query: 176 GGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GGEEF       +SE         +R+ IE S+IN  +G    IT S GI+    +   +
Sbjct: 272 GGEEFILYISDFTSEDNVYSKIEAIRRTIEGSKINF-NGRDESITASFGISFFPLNGTDL 330

Query: 234 STIIYRADQALYVAKKSGRNRV 255
           + +I +AD  LY AKKSG+NRV
Sbjct: 331 NELISKADDLLYKAKKSGKNRV 352


>gi|326408241|gb|ADZ65306.1| diguanylate cyclase GGDEF domain-containing protein [Brucella
           melitensis M28]
          Length = 672

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFF 134
           L+G +    + E      R+  ++  D L+GL N + F   +GS  +        ++ + 
Sbjct: 218 LIGLV--EDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHVGSLLKKGSDCDPFALFYL 275

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK +ND+  H  GD+++  ++ +L  +     F+ RLGG+EFA      +  + A+
Sbjct: 276 DIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGTLAQIAM 335

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
            A+ +    ++    +  G +  +T S GIA+   H +    ++  AD ALY +K  GR 
Sbjct: 336 FADRVLSAFQD--PFVLGGNAEFVTCSMGIAQAPLHGDNPDVLMRNADLALYASKSGGRR 393

Query: 254 RVVCFSD 260
               + D
Sbjct: 394 TFRFYQD 400


>gi|325925986|ref|ZP_08187352.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
 gi|325543582|gb|EGD14999.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
          Length = 983

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 85/172 (49%), Gaps = 10/172 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           ++L  +   +S  +  D L+GLLN +  +++L             L++V  D+D+FK +N
Sbjct: 802 RDLEAARAELSLKATHDELTGLLNRAGILAALREMLLHAEHTGRPLAVVLIDLDHFKLVN 861

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD V+A +  ++  +      +GR GGEE  A   G +      L      I 
Sbjct: 862 DQHGHLAGDAVLAGVGRRMDTLMRGDDRIGRYGGEELLALLPGLNLDATHRLDALHHGIC 921

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  I    G  +H+T S G+A     E +  ++ RAD ALY AK+SGRNRV
Sbjct: 922 GDYPI---DGGWLHVTCSVGVAWFQRGETLEQLLARADAALYRAKRSGRNRV 970


>gi|313649476|gb|EFS13907.1| gmr domain protein [Shigella flexneri 2a str. 2457T]
          Length = 284

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 91/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 59  SGTDITEERRTQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 118

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 119 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 177

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    +TII  AD A+Y AK+ GR +   F
Sbjct: 178 --LTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSATIIRHADTAMYTAKEGGRGQFCVF 235

Query: 259 SDIENN 264
           +   N 
Sbjct: 236 TPEMNQ 241


>gi|313200863|ref|YP_004039521.1| diguanylate cyclase [Methylovorus sp. MP688]
 gi|312440179|gb|ADQ84285.1| diguanylate cyclase [Methylovorus sp. MP688]
          Length = 386

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 20/204 (9%)

Query: 75  SITISLLLGYISGSILKELFI---------SYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
           ++ + +++G  +G+  K + +         +   +S  +  D L+GL N   F S     
Sbjct: 185 ALLLLIVIGLFTGAYYKTVRLFEIASTSQTTAEEMSHDAYHDSLTGLPNRRYFESYFRRQ 244

Query: 126 -------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                   +  S+ + D+D FK+IND  GH  GD  + F +++         F+ RLGG+
Sbjct: 245 IFLSKRSGQPFSLFYLDLDGFKEINDRHGHDGGDLALKFATERFKNALRESDFIARLGGD 304

Query: 179 EFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTI 236
           EF        S  E   L N + + I  +Q     G    + +S GI+      +    +
Sbjct: 305 EFVVLVHNYRSVSEIGGLGNRIIRYI--NQPFTIDGQHQLLGVSIGISCYPMDGQEADEL 362

Query: 237 IYRADQALYVAKKSGRNRVVCFSD 260
           +  AD+A+Y AKK+G+NR+V   D
Sbjct: 363 LDAADRAMYQAKKNGKNRLVFSQD 386


>gi|311695657|gb|ADP98530.1| sensory box/GGDEF family protein [marine bacterium HP15]
          Length = 344

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 72/275 (26%), Positives = 128/275 (46%), Gaps = 20/275 (7%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIF-------IATVIFIANIFLFYI 53
           ++ +  ++  I +  E+   SF     ++Y    F +F       +  ++  +  F+  +
Sbjct: 71  LSITYANYYLIHVAWEQAAFSFPYEGTLLYAFFGFFVFGMKFHYALTAMVLSSLGFVGLM 130

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
            +   YG    +  N   V  S+ + ++  +    +L +L  +  ++  LS ID L+ L 
Sbjct: 131 LMDSVYGERTWM--NAGFVAGSLFVGVIGRHRIDRLLGQLQEANEQLVGLSTIDELTDLF 188

Query: 114 NHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N  A +S            N++L+++  D+D+FKQ ND++GH  GD+ I   +D +  VF
Sbjct: 189 NRRALMSESGRLFARQRRSNQRLAVLMMDLDHFKQFNDHYGHQQGDQAIRQQADIMRQVF 248

Query: 167 -GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGI 224
                 +GR GGEEF A   G       +LA ++ K  ++  ++    P S  ++ S GI
Sbjct: 249 KRQTDILGRYGGEEFMAVIEGEDADRFELLAAEVLKQWQDRAVSNEDSPDSKELSCSIGI 308

Query: 225 AE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +      + I  +I  AD+ALY AKK GR R V 
Sbjct: 309 CQGLATEFDSIDEMIRMADEALYRAKKQGRARYVM 343


>gi|153215850|ref|ZP_01950182.1| GGDEF domain protein [Vibrio cholerae 1587]
 gi|153801998|ref|ZP_01956584.1| GGDEF domain protein [Vibrio cholerae MZO-3]
 gi|153829154|ref|ZP_01981821.1| GGDEF domain protein [Vibrio cholerae 623-39]
 gi|229512919|ref|ZP_04402386.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae TMA
           21]
 gi|229520949|ref|ZP_04410371.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae TM
           11079-80]
 gi|254291898|ref|ZP_04962680.1| GGDEF domain protein [Vibrio cholerae AM-19226]
 gi|297580784|ref|ZP_06942710.1| GGDEF domain-containing protein [Vibrio cholerae RC385]
 gi|124114567|gb|EAY33387.1| GGDEF domain protein [Vibrio cholerae 1587]
 gi|124122457|gb|EAY41200.1| GGDEF domain protein [Vibrio cholerae MZO-3]
 gi|148875343|gb|EDL73478.1| GGDEF domain protein [Vibrio cholerae 623-39]
 gi|150422184|gb|EDN14149.1| GGDEF domain protein [Vibrio cholerae AM-19226]
 gi|229342182|gb|EEO07178.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae TM
           11079-80]
 gi|229350168|gb|EEO15121.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae TMA
           21]
 gi|259156587|gb|ACV96530.1| ggdef domain protein [Vibrio fluvialis Ind1]
 gi|297535200|gb|EFH74035.1| GGDEF domain-containing protein [Vibrio cholerae RC385]
          Length = 685

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 10/190 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           L     S+ K   ++ ++++QL+  D L+GL N S  +  L        + +    + + 
Sbjct: 220 LASTFQSMWKGKELAESKLNQLAYYDSLTGLANRSLLLQKLSDAIETAQNSHSTGVLFYL 279

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND+ GH +GD++I  ++ ++           R+GG+EFA      S  +A  
Sbjct: 280 DLDRFKTINDSLGHTIGDQLIKAVALRMEAWTKNDYLSARIGGDEFAVLIPYLSPAKAEE 339

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRN 253
           +A  L  +I N           + T+S GI+           ++ +AD ALY AK SGRN
Sbjct: 340 VAKQLLTLISN--PYAVDDHQFYCTVSIGISVFPSVGSSNIDVLRQADTALYRAKASGRN 397

Query: 254 RVVCFSDIEN 263
           + + +     
Sbjct: 398 KFMFYEPEMQ 407


>gi|315127420|ref|YP_004069423.1| diguanylate cyclase with PAS/PAC sensor [Pseudoalteromonas sp.
           SM9913]
 gi|315015934|gb|ADT69272.1| diguanylate cyclase with PAS/PAC sensor [Pseudoalteromonas sp.
           SM9913]
          Length = 331

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 11/173 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNF 146
              YNR+   +  D L+GL N  A   SL  Y        + L+ +  D+D+FK+ ND +
Sbjct: 155 KAMYNRLKIQASTDHLTGLANRLALDESLKKYWQESIQSQQPLTSILIDVDHFKKFNDTY 214

Query: 147 GHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           GH  GDK +  ++  L+           R GGEEFA        + A I+A  +++ I  
Sbjct: 215 GHIKGDKCLQKIAKMLLHCIPSRECLAARYGGEEFAIILPRCDIKSATIVAKHVQQQINA 274

Query: 206 SQI-NISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
               +I   P + +++S GIA   + +      ++Y AD ALY AK  GRN++
Sbjct: 275 MTFTDIGLPPEVKVSVSQGIASENNNQYRTYEALLYAADTALYRAKTEGRNKI 327


>gi|315268460|gb|ADT95313.1| diguanylate cyclase [Shewanella baltica OS678]
          Length = 584

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 109/244 (44%), Gaps = 26/244 (10%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGL-----EYILVENLSLVIIS---------ITISLL 81
           + FI  +     ++ F+I LT ++ +     + ++    ++  I+         +T +L 
Sbjct: 330 TAFIILIFCSGILYCFFIWLTSWHFITKGIIKPVMATRDAMNAIANEKLDTHMPVTDNLE 389

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFF 134
           L  +  S+   L     ++  ++  D L+G  N                 +N  L I+ F
Sbjct: 390 LQQMVNSLET-LKSYAAQVKGMAETDGLTGCYNRRYLDIQLQKELEYARDHNMPLGIILF 448

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           DID FKQ ND +GH  GD+ +  + +    +       + R GGEEF      S  +E  
Sbjct: 449 DIDNFKQFNDRYGHVAGDQCLKNIVNAAKSILKRPTDMLARYGGEEFMIVLPSSHLEEVY 508

Query: 194 ILANDLRKIIENSQINISSGPSIHI-TISAGIA--ERCHKEPISTIIYRADQALYVAKKS 250
             A  LR+ I + +I     P   I TISAGI   +   +   +++I RAD+ALY AK +
Sbjct: 509 QFAERLREKIISLEIPHEDSPHAGILTISAGITCWQLPQQLDANSLINRADEALYHAKLT 568

Query: 251 GRNR 254
           GRNR
Sbjct: 569 GRNR 572


>gi|299771575|ref|YP_003733601.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter sp. DR1]
 gi|298701663|gb|ADI92228.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter sp. DR1]
          Length = 684

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 67/266 (25%), Positives = 129/266 (48%), Gaps = 18/266 (6%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIG--LTPFYGLEYILV 66
           L+  L ++         T  I FS+  ++ I  + + A I        ++ +     +L+
Sbjct: 157 LAFLLAYKLKDNERYRLTLKIAFSVMMTLSIMGMHYTALIATNITDKFISQYQAEHDLLL 216

Query: 67  ENLSLV-----IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
             + LV     + S  +++L   ++   L EL  +   ++ LS +D L+ L N    +  
Sbjct: 217 FTIILVTCLVLVASFIVAMLEQRLTQQNL-ELRKANKELANLSILDNLTKLPNRLYLVDY 275

Query: 122 LG------SY-NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
                    Y ++K++ ++ D+D FK +ND FGH VGD+++  ++++L         + R
Sbjct: 276 AEVLLSDHRYKDQKIAFLYIDLDRFKSVNDAFGHHVGDQLLIQMANRLHWQLNEKCKLLR 335

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           +GG+EF   A  ++  EA +LA  + ++I+ S     SG  I+I+ S G+A    H + +
Sbjct: 336 IGGDEFLLIAENTNADEAVVLAEKVLQLIQES--YQISGKEINISASLGVALFPEHGQNV 393

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
             ++  AD A+ ++K+ GRN    FS
Sbjct: 394 QDLLMNADAAMLMSKEQGRNTYTIFS 419


>gi|239996173|ref|ZP_04716697.1| hypothetical FOG: GGDEF domain protein [Alteromonas macleodii ATCC
           27126]
          Length = 320

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 61/189 (32%), Positives = 88/189 (46%), Gaps = 23/189 (12%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-----------------GSYNEKLSIVF 133
           +EL  +Y  + ++S  D L+GL N     S L                 G   + L  + 
Sbjct: 87  QELERAYKTLEEVSLRDPLTGLYNRHYLESQLPGEIRRSQFSAKQSPSTGKTKQDLLCLL 146

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK+IND++GH  GDKV++  ++ L  VF     + R GGEEF      S+ +E  
Sbjct: 147 IDIDHFKRINDDYGHIAGDKVLSAFANVLKEVFRQTDLIIRWGGEEFLVVCRQSTREELP 206

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYR--A--DQALYVA 247
            +A   R+++ N+  +I     I+IT S G +       E   T   R  A  D ALY  
Sbjct: 207 EVAERCREMVANTPFDIGLEKPINITCSIGFSLLPPDREEDFDTAWKRTFAVIDYALYAT 266

Query: 248 KKSGRNRVV 256
           K SGRN  V
Sbjct: 267 KLSGRNGWV 275


>gi|229592511|ref|YP_002874630.1| putative signaling-like protein [Pseudomonas fluorescens SBW25]
 gi|229364377|emb|CAY52152.1| putative signalling-related protein [Pseudomonas fluorescens SBW25]
          Length = 395

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 12/178 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYF 139
             + ++L +  +    ++  D L+ + N                 +   LS++  DID F
Sbjct: 223 SRVNQQLQLQLDENRSMAERDALTLVANRYRLEKVLLEECDRAKRFRLPLSLIAMDIDDF 282

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND +GH VGD+ +  + + L         + R GG+EF      +S + A  LA  +
Sbjct: 283 KPINDRYGHGVGDQTLVRVVECLEHAIRPDDLLARWGGDEFVLVLPKTSLEVATALAERI 342

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R+ ++N            IT+S G+A+R   E  + ++ RADQALY AK +G++ V  
Sbjct: 343 RQTLKNLP-----SGDFKITLSLGVAQRKAHEAPAALMMRADQALYRAKAAGKDGVSV 395


>gi|228913316|ref|ZP_04076950.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228925816|ref|ZP_04088900.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228932055|ref|ZP_04094947.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228944380|ref|ZP_04106753.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|229120277|ref|ZP_04249528.1| Sensory box/GGDEF [Bacillus cereus 95/8201]
 gi|228663318|gb|EEL18907.1| Sensory box/GGDEF [Bacillus cereus 95/8201]
 gi|228815282|gb|EEM61530.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228827638|gb|EEM73380.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228833831|gb|EEM79384.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228846367|gb|EEM91385.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 569

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++        +  +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF        + E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHKQDEMRQLATSVLSCFQA-- 252

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 253 PFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 307


>gi|95929952|ref|ZP_01312692.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95133921|gb|EAT15580.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 548

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 98/206 (47%), Gaps = 11/206 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG- 123
           L    ++ +I + ++++  +I    + E+   ++ +      D L+GL N   F   L  
Sbjct: 324 LEHQFNMAMILLLLAIVPAWIVSLFVAEIIHKHHELKMKVNYDSLTGLANRVLFSDRLEQ 383

Query: 124 ------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                   + + +++F D+D FK +ND  GH  GD+++  L  ++  +      V RLGG
Sbjct: 384 LLWASERSSHQFAVLFCDLDGFKAVNDTLGHDAGDELLIALGQRMKDLVRKSDTVARLGG 443

Query: 178 EEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPIST 235
           +EFA      S    A ++A+ +   +    + +++G +  +  S GIA    H +    
Sbjct: 444 DEFAVLLANISSVHVAEMIASKVVDQLSQ-PVELNNGRA-QVGGSVGIALYPDHAKTSKG 501

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDI 261
           ++  ADQA+Y AK+SG+ R   +  I
Sbjct: 502 LVTCADQAMYEAKRSGKGRYYRYDQI 527


>gi|229591725|ref|YP_002873844.1| putative GGDEF/GAF domain sensory box protein [Pseudomonas
           fluorescens SBW25]
 gi|229363591|emb|CAY50893.1| putative GGDEF/GAF domain sensory box protein [Pseudomonas
           fluorescens SBW25]
          Length = 315

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 8/168 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           Y   ++ +  D L+   N  A   +L         +   LS++  DID+FK+IND  GH 
Sbjct: 147 YRAATRSALRDPLTETGNRIAMDQTLQREIDMARRHLNPLSLLMIDIDHFKRINDTHGHA 206

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++  +         V R GGEEF      +    AA++   LR+    +Q  
Sbjct: 207 AGDNVLRAVAAAIKGQLRNVDMVFRFGGEEFLILLSNTGRDAAAMVGERLRQA-AQAQDY 265

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +    I +T+S G +     E   +++ RAD ALYVAK+ GRNR+  
Sbjct: 266 WADDTRIELTVSLGCSTLLAAESAESLLRRADTALYVAKREGRNRLAM 313


>gi|229528161|ref|ZP_04417552.1| sensory box/GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229334523|gb|EEO00009.1| sensory box/GGDEF family protein [Vibrio cholerae 12129(1)]
          Length = 321

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 12/195 (6%)

Query: 73  IISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
           I+      ++G I   + + ++     ++ QL+  D L+ L N            +    
Sbjct: 125 ILHRVTGEVIGLIGVSTDITDIVELREQLYQLANTDSLTQLCNRRKLWADFRAAFARAKR 184

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
             + LS +  DID FK IND FGH  GD+V+ FL+     V     F GR+GGEEF    
Sbjct: 185 LRQPLSCISIDIDNFKLINDQFGHDKGDEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVL 244

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQA 243
             +  + A  LA  +R+          +    HI + AG++   H +  I+ I  R+DQA
Sbjct: 245 ENTHVETAFHLAEQIRQRFAEHPFFEQNE---HIYLCAGVSSLHHGDHDIADIYRRSDQA 301

Query: 244 LYVAKKSGRNRVVCF 258
           LY AK++GRNR   +
Sbjct: 302 LYKAKRNGRNRCCIY 316


>gi|229058393|ref|ZP_04196777.1| Sensory box/GGDEF [Bacillus cereus AH603]
 gi|228719902|gb|EEL71492.1| Sensory box/GGDEF [Bacillus cereus AH603]
          Length = 800

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 93/200 (46%), Gaps = 10/200 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           +++V I I       Y+    +  +    + I+ L+  D ++ + N   F   L    E+
Sbjct: 341 VTIVPIMIEGQTFGSYVMVKDITRMKKQQDEINYLAFHDTVTEIGNRIFFQKELEKSIER 400

Query: 129 -------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                    +++ D++ FK IND  GH +GD V+  ++ +        + + R+GG+EFA
Sbjct: 401 ARKTQGEFGLLYIDLNRFKTINDTLGHSIGDSVLKEVAKRFRTCLSPAIPLARIGGDEFA 460

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRA 240
                 +EQ+   L   L +I E +   + +  S ++++S GIA         +T++  A
Sbjct: 461 IIVHNHTEQQLLDLCETLFRITEEA--FVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHA 518

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D A+Y AK+ G N V  + +
Sbjct: 519 DIAMYSAKEKGNNAVCMYDE 538


>gi|89092332|ref|ZP_01165286.1| histidine kinase [Oceanospirillum sp. MED92]
 gi|89083420|gb|EAR62638.1| histidine kinase [Oceanospirillum sp. MED92]
          Length = 619

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 64/175 (36%), Positives = 83/175 (47%), Gaps = 10/175 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           L+ L     ++   +  D L+GLLN   F                 L+I   DIDYFK+I
Sbjct: 441 LQALEDEKQKLHTQAITDPLTGLLNRRGFSIAGNKEWQYHLRTRNPLTIAMIDIDYFKRI 500

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND   H VGD V+  L+  L         V R+GGEEFA         EA I    LR++
Sbjct: 501 NDEHSHSVGDDVLVELARHLTEHMRQSDLVARIGGEEFALIL-NQPLPEAEIGLERLREL 559

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           IE+S +  S+   IH TIS G  E C +   +   +  AD  LY AK+ GRNRVV
Sbjct: 560 IEHSPVT-SADEQIHYTISIGAVEACRRFISLEAALDAADNNLYAAKRRGRNRVV 613


>gi|146278363|ref|YP_001168522.1| diguanylate cyclase [Rhodobacter sphaeroides ATCC 17025]
 gi|145556604|gb|ABP71217.1| diguanylate cyclase [Rhodobacter sphaeroides ATCC 17025]
          Length = 347

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 65/256 (25%), Positives = 113/256 (44%), Gaps = 19/256 (7%)

Query: 13  LCHEKNLESFSP--HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           +C    + S  P   +++    +   + +A +I +  + L ++ + P +         L 
Sbjct: 96  MCVAALMGSLWPPVRSWLGLGDLGGLVLLAAMISLPLVVLAWLPVDPEH-------SRLM 148

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLGSYN- 126
           + +I + ++L    + G++L+    +  R   L   ++ D L+G+LN  +F       + 
Sbjct: 149 IGMILVLLNLAGALVFGTLLQRERSAAQRERALVAETQTDALTGVLNRRSFERRFADADG 208

Query: 127 ----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                   ++  DID+FK++ND  GH  GD V+   + +L         V RLGGEEFA 
Sbjct: 209 LAGSRGTGLMIVDIDHFKRVNDVHGHEAGDIVLRAAATRLRNAVRPGDSVIRLGGEEFAV 268

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-AD 241
                  QEA   A+ L++++      I     + IT+S G+           +  R AD
Sbjct: 269 LLPDVDAQEAERAAHRLQRML-TMNCRIDEARRVDITVSIGVTHLPPASAALPVASRTAD 327

Query: 242 QALYVAKKSGRNRVVC 257
            ALY AK  GR RVV 
Sbjct: 328 GALYRAKSDGRARVVF 343


>gi|172057395|ref|YP_001813855.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15]
 gi|171989916|gb|ACB60838.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15]
          Length = 374

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 103/206 (50%), Gaps = 11/206 (5%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRIS---QLSRIDCLSGLLNHSAFISS--- 121
           +L L++ + TI L +G +S  +  +      ++    Q S  D L+GL N   + +    
Sbjct: 160 SLRLLLATWTIGLAVGVLSSMLTLDFQTLNRQVELYKQSSERDHLTGLYNRRVWDTRTAG 219

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
           L       +++  DID+FK +ND +GH  GD V+   ++ L+          R+GGEEF 
Sbjct: 220 LEQEGRIYNVLALDIDHFKHVNDTYGHGNGDFVLQQFANILMEETRPHDITVRIGGEEFM 279

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYR 239
                 +  +   +AN +R+ I + +  +   P I +T S GIA   + H + ++ +   
Sbjct: 280 ILIYDLTPSKIIKVANRIRERIAHERFQLDGFPDITVTASIGIAHGKQIHIQHMNGL--- 336

Query: 240 ADQALYVAKKSGRNRVVCFSDIENNT 265
           AD+ALY AK+ GRNR + F+ ++  +
Sbjct: 337 ADEALYTAKQQGRNRTILFNQLDQQS 362


>gi|326795877|ref|YP_004313697.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326546641|gb|ADZ91861.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 480

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 109/204 (53%), Gaps = 16/204 (7%)

Query: 61  LEYILVENLSLV-IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS--- 116
           +E  L+ NL L  ++S+ I   + +++           N++ +++R D L+G +N     
Sbjct: 283 VERALIINLVLSGVVSLCILAFVHWVT-------RGYSNKLERMARYDHLTGAVNRQTLD 335

Query: 117 -AFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             F  ++GS N+K   LS+V  DID+FK++NDNFGH  GDKVI+ ++  +  +      +
Sbjct: 336 VLFQKAIGSSNKKQEALSLVLIDIDHFKKVNDNFGHQAGDKVISGVARIMKNLLHKEDII 395

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232
            R GGEEF      + + +A  L   L   IE+++ ++    ++ ITISAG+ +    E 
Sbjct: 396 CRWGGEEFLFILSNTDKSKATSLIKTLLNRIEDTKFDVGES-TVSITISAGLTQLNTDES 454

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
           +   I RAD  LY AKK GRN   
Sbjct: 455 LPQAIARADARLYQAKKEGRNTFR 478


>gi|294636573|ref|ZP_06714936.1| GGDEF domain protein [Edwardsiella tarda ATCC 23685]
 gi|291090191|gb|EFE22752.1| GGDEF domain protein [Edwardsiella tarda ATCC 23685]
          Length = 388

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 5/156 (3%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +S  +  D L+GL N + F++ L S N   E++ ++F D D FK IND +GH  GD V+ 
Sbjct: 228 LSYKALHDPLTGLPNRTCFMNMLESLNPQQEQICVMFLDGDGFKSINDGWGHAAGDHVLI 287

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPS 215
            ++ +L         V RLGG+EFA          EA  +A  + + +    I +++G  
Sbjct: 288 EVASRLSKQIRKTDMVARLGGDEFAILLRNIEHTDEAERVAQGILQAV-PQPITLANGVH 346

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           + +T S G+        +S ++ RAD A+Y +K+ G
Sbjct: 347 VSMTFSIGLTFSVPDSQLSDLLERADSAMYQSKQRG 382


>gi|186474211|ref|YP_001861553.1| diguanylate cyclase [Burkholderia phymatum STM815]
 gi|184196543|gb|ACC74507.1| diguanylate cyclase [Burkholderia phymatum STM815]
          Length = 603

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 69/279 (24%), Positives = 119/279 (42%), Gaps = 27/279 (9%)

Query: 6   KDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLT-PFYGL--- 61
             FL I L   K L        M+   I   + I +   I    LF   LT P + L   
Sbjct: 301 NRFLVIGLA--KPLHDVLVGANMLGNRIVRMVLIFSAFAILLAILFARALTRPLHTLADA 358

Query: 62  --EYILVENLSLVIISITISL-LLGYISGSILKELFIS-------YNRISQLSRIDCLSG 111
              +     +  + +  T  + +L      + +E+ +         + +  L+  D L+G
Sbjct: 359 ATHFFSEHTMDALPVKRTDEIGVLARGFDRMRREIRVQMDALHSKQHELVHLASHDGLTG 418

Query: 112 LLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           L N   F+  L           E+L+++F D++ FKQIND +GH VGD V+A ++ +L  
Sbjct: 419 LPNRMLFMQKLEEAIDRARVTGERLAVLFIDLNRFKQINDQYGHSVGDDVLAIVAGRLRQ 478

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSGPSIHITISAG 223
           V      V RLGG+EF     G    EAA ++A  + + I++    +     + +  S G
Sbjct: 479 VLHAGDLVARLGGDEFIVLVKGERSAEAAPVIAARIVRTIDDEL--LIGDQPMAVGASIG 536

Query: 224 IAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           I++     +    ++  AD A+Y AK  G    + + ++
Sbjct: 537 ISQFPSDGDSAEALLLNADAAMYAAKSGGSGAWLSYREL 575


>gi|56476521|ref|YP_158110.1| hypothetical protein ebA1965 [Aromatoleum aromaticum EbN1]
 gi|56312564|emb|CAI07209.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 1020

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 81/180 (45%), Gaps = 11/180 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQ 141
            + +   +  R  + +  D L+ L N           +++ G  + + + +F D++ FK 
Sbjct: 576 DITDRKEAEQRAHEAALHDSLTALPNRRLIFEYAEHLLAAAGRKHSQGAFLFIDLNRFKP 635

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLR 200
           +ND +GH  GD+++  ++ +L         +GRLGG+EF        + QEA  +A  + 
Sbjct: 636 VNDLYGHEAGDRLLQEVACRLKAGVRKEDIIGRLGGDEFIVLLPYLEQTQEAMNIAQYIV 695

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +  SQ  +     + ++ S GI+    H   +  +I  AD A+Y AK   R     + 
Sbjct: 696 ESV--SQPFMIRDAEVSVSPSIGISLFPQHGMTVDGLIRAADLAMYQAKHCSRGAYCVYE 753


>gi|332306118|ref|YP_004433969.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173447|gb|AEE22701.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 483

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 5/185 (2%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIV 132
           + + + + +++  ++   F   +       +D L+ L N +        +   N+  S++
Sbjct: 297 VLLIIFVVFVTAHLIIRFFEHESSKKHQ--LDPLTQLHNRAHLQWRFDKVARANQAASLI 354

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D FK IND  GH VGDKV+  ++  L         + R GGEEF      +   +A
Sbjct: 355 MVDVDNFKHINDTRGHNVGDKVLIEIAQLLQSELREHDAIARWGGEEFVILLPATKLDKA 414

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             +A      I    + +    S+ ++ S G+        +  ++  AD ALY AK +G+
Sbjct: 415 QSIAQRTCTKIAQRPLQLVGEESLAVSASFGVTYTAQVRSLERLVKVADDALYEAKHAGK 474

Query: 253 NRVVC 257
           N V  
Sbjct: 475 NCVRV 479


>gi|313681528|ref|YP_004059266.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313154388|gb|ADR33066.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 402

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 94/228 (41%), Gaps = 15/228 (6%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIIS-ITISLLLGYISGSILKELFISYNRI 100
            + +A      + L  F G+   LV  L+ VI S I I       S   LK L +   ++
Sbjct: 174 AMLLAQYENALMQLILFLGVILALVMGLAWVIFSRIEIQQQQLIASSETLKHLNL---KL 230

Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            Q S  D L+ L N   F              N+    +  DID+FKQ ND +GH  GD 
Sbjct: 231 EQASYTDSLTSLFNRRYFNIVYDREFKRALRSNKPFVFMMLDIDFFKQYNDTYGHIQGDV 290

Query: 154 VIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            +  ++  L         +  RLGGEEF         + A I+   +R  I++ +I    
Sbjct: 291 ALQTVAKILKSTLQRPGDYPFRLGGEEFGIILCDIDCKNAHIMGEKVRAAIDSLKIEHKG 350

Query: 213 GPSI-HITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +  +++S G              +I+ AD  LY AK+ GRN+VV 
Sbjct: 351 SKILPTLSVSIGGICITPTLDMSDDALIHAADTNLYAAKERGRNQVVF 398


>gi|300309626|ref|YP_003773718.1| diguanylate cyclase [Herbaspirillum seropedicae SmR1]
 gi|300072411|gb|ADJ61810.1| diguanylate cyclase protein [Herbaspirillum seropedicae SmR1]
          Length = 358

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 15/170 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQIND 144
           E   +  ++ Q +  D L+G+ N  +F   L             LS++  D+DYFKQ ND
Sbjct: 190 EARRAMQKLEQQTLTDALTGIGNRRSFDLRLREEWTRHLRNARPLSLLMVDVDYFKQYND 249

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GHP GD ++  L   L        F+ R GG+EF+     + E  A  +A  ++  +E
Sbjct: 250 TYGHPAGDALLTQLGRVLRSPLRASDFLARYGGDEFSLILPDTDEIGALQVAERIKAAVE 309

Query: 205 NSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGR 252
            +           I IS G A     E    S ++  ADQA+Y  K  GR
Sbjct: 310 QAHWEHCD-----IEISLGAATVTPSEMCDFSALLQAADQAMYRRKH-GR 353


>gi|253998777|ref|YP_003050840.1| diguanylate cyclase [Methylovorus sp. SIP3-4]
 gi|253985456|gb|ACT50313.1| diguanylate cyclase [Methylovorus sp. SIP3-4]
          Length = 386

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 11/172 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
             +S  +  D L+GL N   F S             +  S+ + D+D FK+IND  GH  
Sbjct: 217 EEMSHDAYHDSLTGLPNRRYFESYFRRQIFLSKRSGQPFSLFYLDLDGFKEINDRHGHDG 276

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQIN 209
           GD  + F +++         F+ RLGG+EF        S  E   L N + + I  +Q  
Sbjct: 277 GDLALKFATERFKNALRESDFIARLGGDEFVVLVHNYRSVSEIGGLGNRIIRYI--NQPF 334

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              G    + +S GI+      +    ++  AD+A+Y AKK+G+NR+V   D
Sbjct: 335 TIDGQHQLLGVSIGISCYPMDGQEADELLDAADRAMYQAKKNGKNRLVFSQD 386


>gi|170693076|ref|ZP_02884237.1| diguanylate cyclase [Burkholderia graminis C4D1M]
 gi|170142074|gb|EDT10241.1| diguanylate cyclase [Burkholderia graminis C4D1M]
          Length = 524

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 10/198 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------- 122
           +L +   T+ +++ ++    L++   +   + +L+  D L+GL N     + L       
Sbjct: 313 ALTLAFGTVFVIVSWLLAFALRDKLRAQAALMRLAATDPLTGLSNRRVLDNRLDEEWRRA 372

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFA 181
               + LS +F DID+FK+ ND +GH  GD  ++ +++ +          V R GGEEFA
Sbjct: 373 RRTGQPLSALFIDIDHFKRFNDTYGHASGDDALSAVAECISSTVRRAVDLVARYGGEEFA 432

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYR 239
                +S   AA +A  +R+ ++   I      S+ +T+S G A            ++  
Sbjct: 433 VILPDTSADGAAAVAEKIRRNVQAQDILHGGDGSVAVTVSVGCATMVPAQGANALDLLAA 492

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD+ LY+AK +GRNRV C
Sbjct: 493 ADRQLYLAKAAGRNRVSC 510


>gi|292490653|ref|YP_003526092.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291579248|gb|ADE13705.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 908

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 82/179 (45%), Gaps = 9/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
             +  L    +++S  +  D L+GL+N   F   L          N    + + D+D FK
Sbjct: 468 RDITPLRALASQLSYQATHDVLTGLINRREFEVRLRQALDDVCQNNTHHVLCYLDLDQFK 527

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND  GH  GDK++  L+  L         +GRLGG+EF    LG    +A  +A  LR
Sbjct: 528 VVNDTCGHLAGDKLLRQLATLLQERIREADCLGRLGGDEFGVLLLGCHLDQAQGIAESLR 587

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
            +I + + N   G +  + +S G+         +  ++  AD A YVAK  GR+R+  +
Sbjct: 588 ILIRDFRFNWK-GKTFQLGVSIGLVPLARGSGGLEEVLSAADTACYVAKDQGRDRIHTY 645


>gi|289623724|ref|ZP_06456678.1| sensory box protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330866091|gb|EGH00800.1| sensory box protein [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 820

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 18/192 (9%)

Query: 83  GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           G +SG++L    ++  R     +S  +  D L+GL+N S F   L               
Sbjct: 348 GVVSGAVLVLHDMTQERQYIADLSWQAAHDPLTGLVNRSEFEHRLQRVLDGIDDQASSHC 407

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F D+D FK +ND  GH  GD+++  L   L         + RLGG+EF    +     
Sbjct: 408 LMFLDLDQFKLVNDTGGHAAGDELLRQLCRALPQGLRDGDTLARLGGDEFGVLLVDCPAD 467

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI---IYRADQALYVA 247
            A  +A  LR+I++     +  G     T+S G+ +    +  +T+   +  AD A Y+A
Sbjct: 468 TALDIAEGLREIVQTLHF-MWKGRPFMTTVSIGLVQL--GDTPATLEGSLSAADMACYMA 524

Query: 248 KKSGRNRVVCFS 259
           K+ GRNRV  +S
Sbjct: 525 KERGRNRVQVYS 536


>gi|58427077|gb|AAW76114.1| c-di-GMP phosphodiesterase A [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 781

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 12/184 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           E      R+ QL+  D L+GL N   F +             E  ++VF +ID FK IND
Sbjct: 343 EREQIRQRVHQLAFYDTLTGLPNRIMFSARAEQALTQAEYAGEPAALVFINIDRFKLIND 402

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH  GD ++  ++ ++         + RL G+EFA A    S ++A+ +A  +   I 
Sbjct: 403 SQGHAAGDGLLRDIALRINDQLTATAMLARLSGDEFALALPQCSAEQASAVAERVLVSIA 462

Query: 205 NSQINISSGP-SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           N    +  G  ++H + S G+A        I+ ++  AD A+  AKK G  R   FS   
Sbjct: 463 N---PLPVGHMTVHPSASIGVAMFPEDGREINILLRHADLAMNRAKKEGGGRFRFFSADM 519

Query: 263 NNTC 266
           N   
Sbjct: 520 NRMA 523


>gi|95929481|ref|ZP_01312224.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
 gi|95134597|gb|EAT16253.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
          Length = 754

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 11/186 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLN----HSAF---ISSLGSYNEKLSIVF 133
           L  + + + + E   +  RI  L+  D L+GL +           + S    +E+ +++F
Sbjct: 558 LRMFGTHTDISEQKQAEARIRHLANHDALTGLPSLRLVRDRINVALESAHRKHEQFAVMF 617

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEA 192
           FD+D FK IND  GH  GD V+  +++ L+        V R+GG+EF        S  + 
Sbjct: 618 FDLDGFKAINDQHGHDAGDFVLQTVANHLLNCVRKSDTVARIGGDEFLLLLTEIKSVDDV 677

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
             +A  + + +  +Q     G  + +  S GIA    H      +I +AD A+Y  K SG
Sbjct: 678 ENIACKVIETV--NQPMEFEGYLLQVQASVGIALYPTHGYTSKALIKQADSAMYTVKSSG 735

Query: 252 RNRVVC 257
           +N    
Sbjct: 736 KNGYRF 741


>gi|316933824|ref|YP_004108806.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           DX-1]
 gi|315601538|gb|ADU44073.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           DX-1]
          Length = 861

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 56/191 (29%), Positives = 89/191 (46%), Gaps = 21/191 (10%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDY 138
           ++   + E   + +RI  L+  D L+GL N S+F   LG         ++L++++ DID 
Sbjct: 410 MTHEEITERKRADSRIHHLAHYDDLTGLPNRSSFRKHLGDALELIEPGDQLALLYIDIDE 469

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND  GHPVGD+++  ++++L        +V RLGG+EFA              A  
Sbjct: 470 FKIVNDTLGHPVGDQLLKCIAERLQRCLAQADYVARLGGDEFAVVMAD---------ATT 520

Query: 199 LRKIIENSQINISS-----GPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGR 252
           +R ++   Q+ +       G  I    S GIA        +  +I +AD ALY AK  GR
Sbjct: 521 VRDLVATLQLALRETFDCAGHVISPDASIGIALAPENGREVDDLIAKADLALYAAKSEGR 580

Query: 253 NRVVCFSDIEN 263
                F    +
Sbjct: 581 RTYRFFMPEMD 591


>gi|269104285|ref|ZP_06156981.1| hypothetical protein VDA_000442 [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268160925|gb|EEZ39422.1| hypothetical protein VDA_000442 [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 367

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 100/229 (43%), Gaps = 12/229 (5%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK--ELFI 95
              T IF+ + + +++    +  L  +     +++II     +L  + + S+ +  E   
Sbjct: 137 LAVTPIFLISSWSYFV-RDDYAILIALQETTATILIIETGRRILSRWFTRSVERDVENKR 195

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
             + ++QL+  D L+ L N   F   L         YN   S++  DIDYFK+ ND  GH
Sbjct: 196 LLSELTQLASRDQLTNLYNRRFFEYELDKQTVQAKRYNIPFSVILIDIDYFKRYNDALGH 255

Query: 149 PVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
             GD+ +  ++  L   +      V R GGEEF      +    A ++A  ++  +    
Sbjct: 256 LQGDECLKIVAKVLNASLLRGADSVSRYGGEEFVVILPNTDIDGAILVAERIQSNMAKMV 315

Query: 208 INISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           I       S  +T+S GIA   +    + +I  AD  LY AK+ GR + 
Sbjct: 316 IPHPDSEISNVVTLSQGIAAWKNHRGPTQLIKEADNHLYQAKELGRAQY 364


>gi|229112714|ref|ZP_04242248.1| Sensory box/GGDEF [Bacillus cereus Rock1-15]
 gi|229147842|ref|ZP_04276183.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24]
 gi|228635492|gb|EEK91981.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24]
 gi|228670736|gb|EEL26046.1| Sensory box/GGDEF [Bacillus cereus Rock1-15]
          Length = 909

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
           Y+    + E      +I+ L+  D L+ L N  AF   L           +  +++F D+
Sbjct: 459 YLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKPFAVMFLDL 518

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAIL 195
           D FK IND  GH VGD ++  ++ +L  +  + M + RL G+EF        ++ +   +
Sbjct: 519 DRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQKI 578

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
           A+ +   + N    I +   + I+ S GIA      E   +I+  AD A+Y AK  G+N 
Sbjct: 579 ADRIVAAM-NEPFEIENQH-LQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 636

Query: 255 VVCFS 259
              ++
Sbjct: 637 SSLYT 641


>gi|149909836|ref|ZP_01898487.1| hypothetical protein PE36_08836 [Moritella sp. PE36]
 gi|149807168|gb|EDM67124.1| hypothetical protein PE36_08836 [Moritella sp. PE36]
          Length = 878

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 5/176 (2%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDN 145
           ++ E   +  +++  +  D L+GLLN +A   F+       +   ++F D+D FK+IND 
Sbjct: 428 VITERKFNEQQLNYQANHDALTGLLNRTACQNFLEEYLQNKQWGVVLFIDLDGFKKINDT 487

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIE 204
           +GH VGD  +   +D+L  +      + R+GG+EF     G  S+     LA  L++ + 
Sbjct: 488 YGHGVGDLFLQKTADRLKQMLRKRDRIARIGGDEFVIYFEGEMSQHTIKQLAERLQREVT 547

Query: 205 NSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              +   S  ++H+T S G      H +    I+  AD A+Y  KK+G+     FS
Sbjct: 548 RPVLLDGSSIALHVTASIGFTFLGPHYQHARDILRDADLAMYEVKKNGKANYQVFS 603


>gi|161524101|ref|YP_001579113.1| diguanylate cyclase/phosphodiesterase [Burkholderia multivorans
           ATCC 17616]
 gi|189351142|ref|YP_001946770.1| signal transduction GGDEF/EAL domain protein [Burkholderia
           multivorans ATCC 17616]
 gi|221199545|ref|ZP_03572589.1| diguanylate cyclase/phosphodiesterase [Burkholderia multivorans
           CGD2M]
 gi|221205555|ref|ZP_03578570.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Burkholderia multivorans CGD2]
 gi|160341530|gb|ABX14616.1| diguanylate cyclase/phosphodiesterase [Burkholderia multivorans
           ATCC 17616]
 gi|189335164|dbj|BAG44234.1| signal transduction GGDEF/EAL domain protein [Burkholderia
           multivorans ATCC 17616]
 gi|221174393|gb|EEE06825.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Burkholderia multivorans CGD2]
 gi|221180830|gb|EEE13233.1| diguanylate cyclase/phosphodiesterase [Burkholderia multivorans
           CGD2M]
          Length = 778

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVIIS-ITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +Y    N+ L++ S IT+++L  + ++  ++ +L      ++QL+  D L+GL N  A +
Sbjct: 290 DYYHTRNVYLLMTSFITLAMLAFFGVATGLIGKLLGREREMTQLAEYDLLTGLANRYATL 349

Query: 120 SSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
             L       S   +L ++F D+D FK +ND  GH  GD V+   + +L    G    + 
Sbjct: 350 RGLRNDVSMPSSLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTASRLSDAVGDEGTLA 409

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EF     G   E+ A  LA  + ++    +     G S  +  S GIA      E
Sbjct: 410 RIGGDEFVVVMKGDDVERRAVRLAEAIIRMFA--EPFDVRGSSFVLHASIGIALHTVANE 467

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +AD A+Y AK +G+N    ++
Sbjct: 468 SEIDLLKKADLAMYSAKDAGKNCYQFYA 495


>gi|289646232|ref|ZP_06477575.1| response regulator WspR [Pseudomonas syringae pv. aesculi str.
           2250]
          Length = 334

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+GL N   F   L            +LS++  D+DYFK  N
Sbjct: 156 QQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRAIRDQAQLSLLMIDVDYFKAYN 215

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DNFGH  GD+ +  ++  +            R GGEEFA     +S   A +LA  LR+ 
Sbjct: 216 DNFGHLEGDEALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQS 275

Query: 203 IENSQI-NISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
           +    I +I+  P   +T+S G+A            +I  AD+ LY+AK +GRN+V  
Sbjct: 276 VSGMNIPHIAPTPGSSLTVSIGVATVTPQVGMHSRQLILDADKGLYLAKNNGRNQVAA 333


>gi|221212626|ref|ZP_03585603.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Burkholderia multivorans CGD1]
 gi|221167725|gb|EEE00195.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Burkholderia multivorans CGD1]
          Length = 749

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 13/177 (7%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQIND 144
             +  ++  L+  D L+GL N       +              +++I+F D+  FK++ND
Sbjct: 313 REAQQQLRYLATRDALTGLYNRRWLSDRMRELFGGRDPAGGPARVAILFLDLVGFKKVND 372

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD ++  ++ +L         + R+GG+EF        + EA  LA   R++I+
Sbjct: 373 TAGHDAGDALLRSVAARLAACMRGRHALTRVGGDEFVILVDDCDDPEA--LAALAREVID 430

Query: 205 N-SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++    +     + +S GI+      +  +T++  AD A+Y AK+ GRN    F+
Sbjct: 431 AIAKPFAIANNEYWLGVSIGISIAPRDGDDAATLMRNADSAMYDAKQRGRNHFTFFT 487


>gi|261419731|ref|YP_003253413.1| response regulator receiver modulated diguanylate cyclase
           [Geobacillus sp. Y412MC61]
 gi|319766549|ref|YP_004132050.1| response regulator receiver modulated diguanylate cyclase
           [Geobacillus sp. Y412MC52]
 gi|261376188|gb|ACX78931.1| response regulator receiver modulated diguanylate cyclase
           [Geobacillus sp. Y412MC61]
 gi|317111415|gb|ADU93907.1| response regulator receiver modulated diguanylate cyclase
           [Geobacillus sp. Y412MC52]
          Length = 536

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 74/176 (42%), Gaps = 9/176 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQI 142
           +  L     ++  L  +D L+ L N          F S    + +   I   D+D+FK+I
Sbjct: 221 VNRLVERKRQLEALLLVDELTRLYNRKYLPEAYRQFESERERHGDPYCIALLDLDHFKKI 280

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH VGD+V+   +  L           R GGEEF      + +Q+A  +   LR  
Sbjct: 281 NDQYGHLVGDEVLREFAALLRNGTRPNDLAFRFGGEEFLLFLPKTPQQDAIEVIERLRDQ 340

Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +   +       H T S GI E       +   + +AD ALY AK  GR+R V 
Sbjct: 341 FRSRSFS-GGNKVFHCTFSCGIVEVNAGGAVLDDWLEQADAALYAAKNGGRDRTVV 395


>gi|331682775|ref|ZP_08383394.1| protein gmr [Escherichia coli H299]
 gi|331080406|gb|EGI51585.1| protein gmr [Escherichia coli H299]
          Length = 661

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|119469568|ref|ZP_01612472.1| GGDEF domain protein [Alteromonadales bacterium TW-7]
 gi|119447103|gb|EAW28373.1| GGDEF domain protein [Alteromonadales bacterium TW-7]
          Length = 313

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 69/265 (26%), Positives = 113/265 (42%), Gaps = 18/265 (6%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSI------FIATVIFIANIFLFYIGLTPFYGLE 62
           L I+L      +   P    I   + FSI       +  V+F+  + L +     F    
Sbjct: 48  LMIYLVLTGGAQGTGPIWIFIVSPVTFSIRGLKRGIVDIVLFLLAVILAFYCAHTFSIYN 107

Query: 63  YILVENLSLVIIS-ITISLLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSA- 117
           Y   +    VI S I +++L G+   S  K   ++     +   L+ ID L+GL N    
Sbjct: 108 YQPDQFPYRVIFSFIIVAMLSGFYENSREKYNQKILALSKKNELLATIDPLTGLPNRRFT 167

Query: 118 ------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
                 F  +L        ++  D+D FK++ND +GH  GD+ +  L++ L         
Sbjct: 168 MNKLSEFKLALTKEQTPFVLILCDVDNFKKVNDEYGHSFGDEALIHLANILKQHIPNNAV 227

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
             R GGEEF  A       +   ++N +   ++   +N S   S+ +TIS G+ +    +
Sbjct: 228 ASRWGGEEFLIAIPNVFNAKGVEISNKIHAALKQFPVNTSF-ASLSLTISMGVVQSHESD 286

Query: 232 PISTIIYRADQALYVAKKSGRNRVV 256
            I   I RAD+ LY AK+ G+NR  
Sbjct: 287 SIDIDIKRADELLYKAKEQGKNRTC 311


>gi|51245642|ref|YP_065526.1| two-component system response regulator [Desulfotalea psychrophila
           LSv54]
 gi|50876679|emb|CAG36519.1| related to two-component system response regulator (hybrid family)
           [Desulfotalea psychrophila LSv54]
          Length = 339

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 11/172 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           +  +++ LS  D L+GLLN   F                +LS++  D+D FK  ND+FGH
Sbjct: 155 TNEQLTLLSTRDGLTGLLNRRYFDEIYQEELQRSLRLGSELSLLLIDVDNFKAYNDSFGH 214

Query: 149 PVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
            VGD  +  +++ L   V      V R GGEEF      +  + A  +A  +R  +   Q
Sbjct: 215 LVGDNALKAVANALCKSVKRHVDRVARYGGEEFVVILPDTDLKGAEHVAERMRNEVLGLQ 274

Query: 208 INIS-SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256
           ++   + P   +TIS G++    K  I   T++  AD  LY AK +GRN   
Sbjct: 275 VSHPRNKPQGLLTISLGVSSVIPKADIELNTLLSVADARLYAAKNAGRNCWR 326


>gi|89098311|ref|ZP_01171195.1| GGDEF [Bacillus sp. NRRL B-14911]
 gi|89086860|gb|EAR65977.1| GGDEF [Bacillus sp. NRRL B-14911]
          Length = 454

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 60/186 (32%), Positives = 95/186 (51%), Gaps = 13/186 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-SSLGSYNE------KLSIVFFDID 137
           IS   + E  +   ++ +L+ ID L+ + N + F+  SL S          +S++ FDID
Sbjct: 261 ISFVNITEKILIQEQLKELASIDGLTQVYNRTYFMKQSLESLGGISPNGGDVSLIMFDID 320

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK+IND +GH  GD V++ ++            +GR GGEEF      +S  EA  LA 
Sbjct: 321 HFKKINDEYGHETGDLVLSHVARVAKESIRAADVIGRYGGEEFIILLPDTSFDEAYDLAE 380

Query: 198 DLRKIIENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGR 252
            +R  +   Q       ++H T+S G++      +   +PI  ++  ADQALY AK++GR
Sbjct: 381 AIRLNVSE-QYTKLGQVNVHATLSLGVSHMFLFPQVLDDPIQFLMREADQALYAAKRNGR 439

Query: 253 NRVVCF 258
           N V  F
Sbjct: 440 NNVQRF 445


>gi|299131993|ref|ZP_07025188.1| diguanylate cyclase [Afipia sp. 1NLS2]
 gi|298592130|gb|EFI52330.1| diguanylate cyclase [Afipia sp. 1NLS2]
          Length = 397

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 113/238 (47%), Gaps = 13/238 (5%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
           F+      +ATV+ +  I          Y + +  +++   VI+ + + L + +  G +L
Sbjct: 149 FAGVVGAILATVVAVRCILRLSQPPDNIYMIHFTPLQS---VIVLVLVFLSIVWNFGFLL 205

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
             +      ++ L+  D L+G+ N    ++ L           +  S++  DID FK IN
Sbjct: 206 MAIDRLRAEVADLALFDDLTGVANRRRLLTCLAEECARSDRSMQPFSVLLMDIDEFKAIN 265

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           DN+GH  GD+ +   +  +     T   + R+GG+EF      ++  EA ++A D+  + 
Sbjct: 266 DNYGHAAGDECLRQFTRTVQQRLRTGDLLARMGGDEFCVVLPATTLHEAGLIARDMLGLC 325

Query: 204 ENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +Q++ S+  +I ++ S G+A+           +I  AD+ALY +K+ G++R   ++
Sbjct: 326 VAAQVHWSA-AAIKLSTSIGVAQWRPEIGHDFDRLIVTADEALYASKRDGKSRYSVYA 382


>gi|296504030|ref|YP_003665730.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
 gi|296325082|gb|ADH08010.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
          Length = 909

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 94/205 (45%), Gaps = 10/205 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           IL   +++V I I       Y+    +  +      I+ L+  D ++ + N   F   L 
Sbjct: 442 ILFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELD 501

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     +K  +++ D++ FK IND  GH +GDKV+  ++ +        + + R+ 
Sbjct: 502 RSIKRAQKTQDKFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIV 561

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           G+EFA      +EQ+   L   L +I E  +  + +  S ++++S GIA         +T
Sbjct: 562 GDEFAIIVHNQTEQQLLDLCKTLFRITE--EPFVVNQHSFYLSLSIGIAVYPFGGINTTT 619

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++  AD A+Y AK+ G N V  + +
Sbjct: 620 LLQHADIAMYSAKEKGNNAVCMYDE 644


>gi|15601692|ref|NP_233323.1| sensory box/GGDEF family protein [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|153821053|ref|ZP_01973720.1| sensory box/GGDEF family protein [Vibrio cholerae B33]
 gi|229510225|ref|ZP_04399705.1| sensory box/GGDEF family protein [Vibrio cholerae B33]
 gi|229517645|ref|ZP_04407090.1| sensory box/GGDEF family protein [Vibrio cholerae RC9]
 gi|229605453|ref|YP_002876157.1| sensory box/GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254850103|ref|ZP_05239453.1| sensory box/GGDEF family protein [Vibrio cholerae MO10]
 gi|9658376|gb|AAF96835.1| sensory box/GGDEF family protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|126521427|gb|EAZ78650.1| sensory box/GGDEF family protein [Vibrio cholerae B33]
 gi|229345681|gb|EEO10654.1| sensory box/GGDEF family protein [Vibrio cholerae RC9]
 gi|229352670|gb|EEO17610.1| sensory box/GGDEF family protein [Vibrio cholerae B33]
 gi|229371939|gb|ACQ62361.1| sensory box/GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254845808|gb|EET24222.1| sensory box/GGDEF family protein [Vibrio cholerae MO10]
          Length = 321

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 12/195 (6%)

Query: 73  IISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
           I+      ++G I   + + ++     ++ QL+  D L+ L N            +    
Sbjct: 125 ILHRVTGEVIGLIGVSTDITDIVELREQLYQLANTDSLTQLCNRRKLWADFRAAFARAKR 184

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
             + LS +  DID FK IND FGH  GD+V+ FL+     V     F GR+GGEEF    
Sbjct: 185 LRQPLSCISIDIDNFKLINDQFGHDKGDEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVL 244

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQA 243
             +  + A  LA  +R+          +    HI + AG++   H +  I+ I  R+DQA
Sbjct: 245 ENTHVETAFHLAEQIRQRFAEHPFFEQNE---HIYLCAGVSSLHHGDHDIADIYRRSDQA 301

Query: 244 LYVAKKSGRNRVVCF 258
           LY AK++GRNR   +
Sbjct: 302 LYKAKRNGRNRCCIY 316


>gi|308270640|emb|CBX27252.1| Uncharacterized signaling protein PA1727 [uncultured
           Desulfobacterium sp.]
          Length = 785

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 90/221 (40%), Gaps = 28/221 (12%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ 118
           L +   + + SI+  + LG        E   + +RI  L+  D L+ L N   F      
Sbjct: 319 LQDTALMALASISDGIALGI-------EKKKAEDRIHFLAYYDNLTNLPNRYFFKELVNK 371

Query: 119 -ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV----- 172
            I     Y    ++V  D+D F +IND  GH VGDK +  +S +L+    +  FV     
Sbjct: 372 TIEYANRYKHTFAVVIIDLDDFNRINDTLGHNVGDKFLKIVSSRLLNTLRSSDFVARIFD 431

Query: 173 -----GRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                 R+GG+EF               +A+ +    E SQ     G  + IT S GIA 
Sbjct: 432 EEEPIARMGGDEFIVLLHELDNDGNCVHVAHRILN--ELSQAYELDGSEVFITASIGIAV 489

Query: 227 RCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
                  +  +I  AD AL+ AKK G+N    +    N T 
Sbjct: 490 YPDDGRDVENLIKNADTALHYAKKRGKNNFQFYLKSMNETA 530


>gi|291301820|ref|YP_003513098.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Stackebrandtia nassauensis DSM 44728]
 gi|290571040|gb|ADD44005.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Stackebrandtia nassauensis DSM 44728]
          Length = 868

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 6/181 (3%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFK 140
           I    + E       +++L+  D L+ L N  A + +L S     +   +++  D+D FK
Sbjct: 419 IRTRDVGERRALERELAKLAFTDPLTTLSNRRALLRTLESDVAGGSMPCTLLAVDLDGFK 478

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND  GH +GD V+  ++ +L           RLGG+EFA        +    +A  L 
Sbjct: 479 NVNDTRGHDIGDAVLVEVAKRLRESLRPTDVAARLGGDEFAVLLW-CPPERGYEIAERLL 537

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            ++           S+ ++ S G+A     + +  ++  AD AL  AK+ G+N++  + +
Sbjct: 538 AVLAE-PYRFDGHASVFLSSSIGLAGCATADDVQALLRNADLALRSAKQQGKNQIEAYDE 596

Query: 261 I 261
           +
Sbjct: 597 L 597


>gi|271502108|ref|YP_003335134.1| diguanylate cyclase [Dickeya dadantii Ech586]
 gi|270345663|gb|ACZ78428.1| diguanylate cyclase [Dickeya dadantii Ech586]
          Length = 381

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 66/203 (32%), Positives = 100/203 (49%), Gaps = 20/203 (9%)

Query: 66  VENLSLVIISITISL---LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
            E ++LV IS+ I++   LL   +   L EL  +       +R D L+G+L   AF    
Sbjct: 169 AEVVTLVCISLLIAIMGSLLSLFTKKYLIELPAT-------ARYDDLTGVLRRDAFYQLA 221

Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     ++ L  +  DID+FKQ+ND +GH  GDK +  ++D +   F     + RL
Sbjct: 222 NRALKVAYQEDKPLCAMLIDIDHFKQVNDTWGHAAGDKTLKTIADIIRHSFRNRDIICRL 281

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPIS 234
           GG+EFA    G + + A  +A  +R+ I     N ++  +  IT+S G +A     E + 
Sbjct: 282 GGDEFAVVLPGITLENAMRVAERVREGIHEFGYN-ATSVAPGITVSIGLVAAELPDERLD 340

Query: 235 TIIYRADQALYVAKKSGRNRVVC 257
            II RAD  LY AK+S RN  V 
Sbjct: 341 EIIRRADVNLYQAKRS-RNCTVA 362


>gi|167034961|ref|YP_001670192.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas putida
           GB-1]
 gi|166861449|gb|ABY99856.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida GB-1]
          Length = 332

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 15/182 (8%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFF 134
           L +++  + ++L    +   +L+  D L+ + N                 + + LS++  
Sbjct: 158 LSWVNHQLQRQL----DENRELAERDALTRVANRYRLEKALQLECERAQRFRQPLSLIAM 213

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND +GH  GD  +  +++ L         + R GG+EF      +   EA  
Sbjct: 214 DMDDFKPINDRYGHARGDAALVRVAENLHTCLRELDLLARWGGDEFVIVLPQTMLGEALE 273

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +A  LR+ +E  +          +T+S G+ +    E    ++ RAD+ALY AK +G+N 
Sbjct: 274 VAARLRQAMEQLEPV----GDCRLTMSYGVVQWREGEDQHALLARADKALYRAKDAGKNA 329

Query: 255 VV 256
           + 
Sbjct: 330 IA 331


>gi|309782241|ref|ZP_07676970.1| sensory box/GGDEF domain protein [Ralstonia sp. 5_7_47FAA]
 gi|308919012|gb|EFP64680.1| sensory box/GGDEF domain protein [Ralstonia sp. 5_7_47FAA]
          Length = 416

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 85/179 (47%), Gaps = 12/179 (6%)

Query: 84  YISGS-ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFD 135
           Y+S S  + +       + + +  D L+GL N       L             L++   D
Sbjct: 237 YVSVSKDITKRVERERALLRAATKDKLTGLHNRHHGEQLLAERYRTARTLQRPLTLAMCD 296

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID+FK+IND FGHP GD+V+A ++D L     +   V R GGEEF       S+ +A  L
Sbjct: 297 IDHFKRINDEFGHPTGDRVLAEVADMLRQAVRSRDAVIRWGGEEFMIVLNECSQTDAVDL 356

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  +   +   +          +T+S G+A     E I  +I RAD ALY AK++GRNR
Sbjct: 357 AKRILDRVNAYE----DEEIPTLTLSLGLATLAPNEAIDELIARADSALYEAKRTGRNR 411


>gi|297545418|ref|YP_003677720.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296843193|gb|ADH61709.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 792

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 11/185 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           S + + E     +++  ++  D L+ L     F+  L           +KL++ F D+D 
Sbjct: 317 SHTDITERKQMESKLKHMAFYDPLTDLPRREVFMDRLKIAMANAKRNGKKLAVFFLDLDN 376

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK IND+ GH +GD+++  ++ +L         V R+GG+EF          ++   +AN
Sbjct: 377 FKTINDSLGHHIGDRLLKKIAKKLKACLRESDTVSRVGGDEFVILLPDIIDIEDTNKVAN 436

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            + ++  N  I   +   +++TIS GIA    H +    I+  AD A+Y AK+ G+N   
Sbjct: 437 RILELF-NQPIKF-NNHELYVTISIGIAIYPDHGKNEKAIVKNADIAMYRAKRDGKNGFQ 494

Query: 257 CFSDI 261
            F  I
Sbjct: 495 YFDSI 499


>gi|206970092|ref|ZP_03231045.1| sensory box/ggdef family protein [Bacillus cereus AH1134]
 gi|206734669|gb|EDZ51838.1| sensory box/ggdef family protein [Bacillus cereus AH1134]
          Length = 909

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
           Y+    + E      +I+ L+  D L+ L N  AF   L           +  +++F D+
Sbjct: 459 YLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAITRAKISKKPFAVMFLDL 518

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAIL 195
           D FK IND  GH VGD ++  ++ +L  +  + M + RL G+EF        ++ +   +
Sbjct: 519 DRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQKI 578

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
           A+ +   + N    I +   + I+ S GIA      E   +I+  AD A+Y AK  G+N 
Sbjct: 579 ADRIVAAM-NEPFEIENQH-LQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 636

Query: 255 VVCFS 259
              ++
Sbjct: 637 SSLYT 641


>gi|134094611|ref|YP_001099686.1| hypothetical protein HEAR1387 [Herminiimonas arsenicoxydans]
          Length = 832

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 11/180 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             + +  ++  +I   +  D L+ L N    +++L             L+++F D+D+FK
Sbjct: 385 RDITKRKMTELQIEYQAMHDMLTDLPNRRYLVNTLATAMETSRQQQSSLTMLFCDLDFFK 444

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND  GH  GD+ +  +S ++V V     FV R GG EF      SS  E++I A  + 
Sbjct: 445 SVNDTHGHDFGDQCLLEISKRIVAVLPESDFVARFGGNEF-VILTNSSLAESSIKAKAIA 503

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFS 259
           + +    +      ++ I +S GIA+      + + +I  AD A+Y AK+ GRNR   + 
Sbjct: 504 RAVSERLVF--ENVAVKIQVSIGIAQLSPDHQVPADLIREADAAMYQAKERGRNRTEIYD 561


>gi|28868706|ref|NP_791325.1| response regulator/GGDEF domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|256032859|pdb|3I5A|A Chain A, Crystal Structure Of Full-Length Wpsr From Pseudomonas
           Syringae
 gi|28851945|gb|AAO55020.1| response regulator/GGDEF domain protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|331016327|gb|EGH96383.1| response regulator/GGDEF domain protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 334

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+GL N   F   L            +LS++  D+DYFK  N
Sbjct: 156 QQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRATRDQAQLSLLMIDVDYFKAYN 215

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DNFGH  GD+ +  ++  +            R GGEEFA     +S   A +LA  LR+ 
Sbjct: 216 DNFGHLEGDEALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQS 275

Query: 203 IENSQI-NISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
           +    I +I+  P   +T+S G+A       +    +I  AD+ LY+AK +GRN+V  
Sbjct: 276 VAGMNIPHIAPVPGSSLTVSIGVATVTPQVGQHSRQLILDADKGLYLAKNNGRNQVAA 333


>gi|120553236|ref|YP_957587.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120323085|gb|ABM17400.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 504

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 15/210 (7%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           F+G++ +   +    +  + I ++ G +SG++  E       +   S  D L+GL N   
Sbjct: 291 FFGVDSLSRRSWRRDMADLLI-IVSGLLSGAL--ERNRLEEDLLNQSIRDPLTGLHNRRY 347

Query: 118 FISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
            +  L         + ++  +  FDID+FK+INDN GH  GD+V+   +D L+    T  
Sbjct: 348 LMPRLDEILAASNRHGDRFCLAMFDIDHFKRINDNLGHLAGDQVLMRFTDVLLAHTRTTD 407

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG---IAER 227
            V R GGEEF     G +E+E   L   + + +   +  +  G ++ +T+SAG   ++E 
Sbjct: 408 VVSRFGGEEFLVVFTGVTEREVQTLVMRIMEAVREEEW-LVDGKALTVTVSAGAVCVSEL 466

Query: 228 CHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             +      +I RAD  LY AK  GR+ +V
Sbjct: 467 TDEPATPEALIARADDRLYQAKDGGRDCLV 496


>gi|67925446|ref|ZP_00518789.1| GGDEF [Crocosphaera watsonii WH 8501]
 gi|67852705|gb|EAM48121.1| GGDEF [Crocosphaera watsonii WH 8501]
          Length = 186

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 11/177 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
           + +EL     ++ +L+ +D L+ + N   F          L    + LS++  DIDYFK+
Sbjct: 1   MNRELHELNQKLYRLANMDGLTQVANRRCFDETLEKEWRRLSREQKPLSLILGDIDYFKR 60

Query: 142 INDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND +GH  GD  +  ++  +    F     V R GGEEFA     +    A  +A  + 
Sbjct: 61  YNDKYGHLGGDDCLKKVATIIAKSTFRPADLVARYGGEEFALILPDTPYDGAKEVAQRIL 120

Query: 201 KIIENSQINIS-SGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNR 254
             + + +I    S    ++TIS G+       +E + + + + D+ALY AKK GR+R
Sbjct: 121 DSLRSVKIPHQVSDVKPYVTISLGVGTIMPSLQENMMSFVDQVDEALYEAKKQGRDR 177


>gi|268680073|ref|YP_003304504.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618104|gb|ACZ12469.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 629

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 9/185 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQ 141
           +   + +   +   +  L+  D L+ L N +             N  ++ +F D+DYFK 
Sbjct: 192 THRDISDRKRTQEDMLFLALNDPLTRLPNRAYLRQEFEKRRLDDNSLMAFLFLDLDYFKN 251

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH +GD+VI  ++ +         F+ R+GG+EF            ++  + +R 
Sbjct: 252 INDMYGHSIGDRVIQIVAKRFASCLCESDFLARVGGDEF-VILTNGHLHVGSLCEDLVRS 310

Query: 202 IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++E     +    S  + +S G+A           +   AD A+Y AK +G+NR V ++ 
Sbjct: 311 LVEPI---VLEEDSFLLGVSIGVACSPQDGTSFEMLFKNADTAMYEAKSNGKNRYVFYTQ 367

Query: 261 IENNT 265
              +T
Sbjct: 368 DMTDT 372


>gi|217974203|ref|YP_002358954.1| diguanylate cyclase [Shewanella baltica OS223]
 gi|217499338|gb|ACK47531.1| diguanylate cyclase [Shewanella baltica OS223]
          Length = 581

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 61/200 (30%), Positives = 97/200 (48%), Gaps = 11/200 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSL 122
            L+ ++I +  L  +  G +L    +   +  +++R+D L+G+LN  A            
Sbjct: 366 MLMFVTILVGGL--FFLGILLAVGQMQKRKFMRMARMDALTGILNRGAGQELGENLFVQA 423

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
            +      ++ FD+D+FK+IND+FGH  GD  +  + D L           R+GGEEFA 
Sbjct: 424 TARGGDFCVILFDLDFFKRINDSFGHGTGDWALKKVVDSLKSHIRNGDVFARIGGEEFAI 483

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRAD 241
               + E++   +A   R  IE      S G    IT S G++     +  +  + +RAD
Sbjct: 484 LLPYADEEKGMEVAEQCRARIEAIDTQHS-GHKFVITASFGVSGLMADDLSLDPLFHRAD 542

Query: 242 QALYVAKKSGRNRVVCFSDI 261
            ALY AK +GRN VV +SDI
Sbjct: 543 MALYAAKANGRNAVVRYSDI 562


>gi|330501559|ref|YP_004378428.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
 gi|328915845|gb|AEB56676.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
          Length = 901

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSY-NEKLSIVFFDIDYFKQIN 143
            + E  ++  RI +L+  D L+ L N      +       +  + L ++  DID FK+IN
Sbjct: 454 DITEAKLAQQRIERLAYTDNLTNLGNRPSFIRSLEERFARHTQQSLGLLLVDIDNFKRIN 513

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK+++ L+ +L    G    + R    EFA    G  +     +A+ + + +
Sbjct: 514 DSLGHQTGDKLLSALARRLRNSLGAKGTLARFASNEFAILLDGCDQDSGLRVAHQVLQTL 573

Query: 204 ENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I IT S G+A    H +   T++  A  AL+ AK +G+++V  F+++ 
Sbjct: 574 DKPLF--VDNQLISITGSVGLAIAPDHGDDPQTLMKHAGLALHKAKANGKHQVQLFTEVL 631

Query: 263 NNTC 266
           N   
Sbjct: 632 NAEA 635


>gi|221211619|ref|ZP_03584598.1| diguanylate cyclase/phosphodiesterase [Burkholderia multivorans
           CGD1]
 gi|221168980|gb|EEE01448.1| diguanylate cyclase/phosphodiesterase [Burkholderia multivorans
           CGD1]
          Length = 778

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVIIS-ITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +Y    N+ L++ S IT+++L  + ++  ++ +L      ++QL+  D L+GL N  A +
Sbjct: 290 DYYHTRNVYLLMTSFITLAMLAFFGVATGLIGKLLGREREMTQLAEYDLLTGLANRYATL 349

Query: 120 SSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
             L       S   +L ++F D+D FK +ND  GH  GD V+   + +L    G    + 
Sbjct: 350 RGLRNDVSMPSSLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTASRLSDAVGDEGTLA 409

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EF     G   E+ A  LA  + ++    +     G S  +  S GIA      E
Sbjct: 410 RIGGDEFVVVMKGDDVERRAVRLAEAIIRMFA--EPFDVRGSSFVLHASIGIALHTVANE 467

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +AD A+Y AK +G+N    ++
Sbjct: 468 SEIDLLKKADLAMYSAKDAGKNCYQFYA 495


>gi|110632742|ref|YP_672950.1| diguanylate cyclase [Mesorhizobium sp. BNC1]
 gi|110283726|gb|ABG61785.1| diguanylate cyclase [Chelativorans sp. BNC1]
          Length = 251

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 61/169 (36%), Positives = 89/169 (52%), Gaps = 3/169 (1%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGH 148
           EL   + ++++ +R+D ++GLLN SAFI+S+        +  ++  D D FKQIND FGH
Sbjct: 77  ELAAMHQKLAERARLDDMTGLLNRSAFIASVEETRVSEGRGCLILIDADRFKQINDTFGH 136

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD  +  ++  +    G    +GRLGGEEF   A   S  EA  LA ++R  +E +  
Sbjct: 137 LAGDLALIEIAGAIRGASGQMHAIGRLGGEEFGVFAFSCSLIEARKLAEEIRAAVEKTHF 196

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                  I +T+S G+         S I+  ADQ LY AK+ GRN VV 
Sbjct: 197 APDGTEPIPLTVSIGVVAARTGAGFSEIMGEADQRLYQAKRRGRNTVVA 245


>gi|89901003|ref|YP_523474.1| diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens
           T118]
 gi|89345740|gb|ABD69943.1| diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens
           T118]
          Length = 499

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 12/230 (5%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLS-LVIISITISLLLGYISGSILKELFISYNRISQ 102
             A++       +    L+++ V+ L   V ++     +L  +    L E       +  
Sbjct: 11  VAAHLLHATFHASLRRPLKWLRVQGLREKVTLNAVPDGVLRIVCVHDLSERKKFEESLRY 70

Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            +  D L+GL N   F       +        +++++F D+DYF+ +ND+FGH  GD ++
Sbjct: 71  QATHDELTGLPNRWLFHLHLSQALVRARRTGLRVAVLFLDLDYFRSVNDSFGHTTGDALL 130

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGP 214
             +  ++         + RLGG+EFA       +  EA  +A+ L   ++ S        
Sbjct: 131 VQVGTRIRSTLRENDTLARLGGDEFAILLADMKNVDEAVRVASKLLLSLQAS--YRLQDQ 188

Query: 215 SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            ++   S G+A      +   T++  AD A+Y AK++GR    C+S   +
Sbjct: 189 DVYSGGSLGLAFYPDDAQDSDTLLRYADMAMYQAKQAGRGGYACYSQEMD 238


>gi|88859132|ref|ZP_01133773.1| putative two-component response regulator [Pseudoalteromonas
           tunicata D2]
 gi|88819358|gb|EAR29172.1| putative two-component response regulator [Pseudoalteromonas
           tunicata D2]
          Length = 312

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 11/178 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDN 145
           +    + + +L  ID L+ + N   F               E++S++  DID+FK  NDN
Sbjct: 135 IKQKNDLLEKLVSIDGLTEINNRRFFDENITKEWRRASRSGEEMSMLLIDIDHFKLFNDN 194

Query: 146 FGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD+ +  ++  L         FV R GGEEFAA        +A   A  L+K + 
Sbjct: 195 YGHRAGDECLKMVASTLKSLCQRGSDFVARYGGEEFAAVFSPCHLDDAIKQAERLQKAVY 254

Query: 205 NSQINISSGPSIH-ITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  I      +   +TIS G+A         + ++I  AD+ LY+AK SGRN+V  ++
Sbjct: 255 DLSIPHKFSSTASVVTISIGVASSNLNGVNSVESLIEMADKGLYLAKDSGRNQVKSYT 312


>gi|332308438|ref|YP_004436289.1| periplasmic/7TM domain sensor diguanylate cyclase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332175767|gb|AEE25021.1| periplasmic/7TM domain sensor diguanylate cyclase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 631

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 93/185 (50%), Gaps = 13/185 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQI 142
           L+EL      + + + +D L+G+ N   F                +L +   DID+FK++
Sbjct: 448 LRELSEINRELEEKNTLDALTGIRNRRYFDKKYLAEVRRSRRERTELVVAMIDIDHFKKV 507

Query: 143 NDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND  GH VGD  I F++++L          V R GGEEF+     +  Q A  L + LR 
Sbjct: 508 NDEHGHLVGDDCIKFVAERLKKTLKRPSDDVCRYGGEEFSVIMPSTDIQGAHDLLDHLRL 567

Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVC-- 257
            I+N+ +  S+G ++++T+S G+A      ++    +I  ADQ LY AK +GRN +V   
Sbjct: 568 EIQNTPV-YSAGVAVNLTVSIGLASAIMDPQQSEDVLIGFADQLLYQAKNNGRNCIVAQK 626

Query: 258 FSDIE 262
           F D E
Sbjct: 627 FPDSE 631


>gi|323174664|gb|EFZ60284.1| cellulose synthesis regulatory protein domain protein [Escherichia
           coli LT-68]
          Length = 178

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 10/177 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           +++  + +   +  D L+ L N  A             ++    S++  D+D+FK IND 
Sbjct: 1   MYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPFSVIQVDLDHFKAINDR 60

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GD+V++  +  +          GR+GGEEF     G+S  EAA +A  +R  +  
Sbjct: 61  FGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASLTEAAEVAERIRLKLNE 120

Query: 206 SQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            ++ I+   +I I+ S G++            +   AD+ LY+AK++GRNRV   SD
Sbjct: 121 KEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRV-FASD 176


>gi|322434116|ref|YP_004216328.1| diguanylate cyclase [Acidobacterium sp. MP5ACTX9]
 gi|321161843|gb|ADW67548.1| diguanylate cyclase [Acidobacterium sp. MP5ACTX9]
          Length = 397

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 87/170 (51%), Gaps = 9/170 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
            + + + +R D L+G LN  A        ++        L ++  D+D+FK++ND FGH 
Sbjct: 215 ESELMEQARTDSLTGALNRRALRVEGAREVARTLRSGHTLCLLLLDVDHFKELNDTFGHS 274

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD  + ++  Q+  V  T   + R GGEEF      +      ++A  LR  +++    
Sbjct: 275 AGDAALQYMVQQVRGVLRTQDLLARSGGEEFTILLPETPLDRGELVAERLRLEVDSKDF- 333

Query: 210 ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           I  G +IH+++S G+A    H      ++ RAD A+Y+AK+ GRNRV+ +
Sbjct: 334 IYEGTAIHLSVSVGVATLDPHCADFEALMRRADSAMYMAKRMGRNRVMAY 383


>gi|217962904|ref|YP_002341482.1| GGDEF domain protein [Bacillus cereus AH187]
 gi|229142158|ref|ZP_04270683.1| GGDEF domain protein [Bacillus cereus BDRD-ST26]
 gi|217068114|gb|ACJ82364.1| GGDEF domain protein [Bacillus cereus AH187]
 gi|228641447|gb|EEK97753.1| GGDEF domain protein [Bacillus cereus BDRD-ST26]
          Length = 348

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 15/227 (6%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           SIFI  + F  N++   I + P   L   +   ++L ++  +++  + +IS + + +   
Sbjct: 126 SIFIRWIWF--NVYSLSILIVPLSMLFKDM-SIVALYLVCSSVAAYITFISANYVLQSNE 182

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
            + ++ Q + ID L+GL N   F   +  +       N+ L ++  DID+FK     +GH
Sbjct: 183 LFQKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNDSLCLLLIDIDHFKS---TYGH 239

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           P GD+V+  +   L  V   P    R GGEEFA             +   +R  +E    
Sbjct: 240 PAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAAVEKHSF 299

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  G  I IT+S GI+    ++     I  AD ALY +K++GRN+V
Sbjct: 300 QLLDGTKIKITVSVGISVY--EQSPEQFIQAADDALYYSKRNGRNQV 344


>gi|146282167|ref|YP_001172320.1| sensory box/GGDEF family protein [Pseudomonas stutzeri A1501]
 gi|145570372|gb|ABP79478.1| sensory box/GGDEF family protein [Pseudomonas stutzeri A1501]
          Length = 708

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 19/190 (10%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
             + E      ++ + +  D L+GL N           ++        L++VF D+D FK
Sbjct: 263 QDISERKHYQQQLERQANHDLLTGLPNRILLNDRIEQGLARAARLGYYLTLVFIDLDNFK 322

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-----LGSSEQEAAIL 195
            IND  GH  GD+++  ++ +L         V R+GG+EF         + +       +
Sbjct: 323 FINDGLGHVAGDELLKSIAARLAGSLRGSDTVARVGGDEFVLVLGDHYRISTVISLLERV 382

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254
            N++R+ +        +G    +  S G+A      E   T++  AD A+Y AKK GRN 
Sbjct: 383 LNEIRRPV------TLAGREFQVGASLGVAMFPDDGEDAQTLLKHADIAMYAAKKRGRNN 436

Query: 255 VVCFSDIENN 264
              F+   N 
Sbjct: 437 FQFFTHDLNR 446


>gi|320156646|ref|YP_004189025.1| GGDEF domain-containing protein [Vibrio vulnificus MO6-24/O]
 gi|319931958|gb|ADV86822.1| GGDEF domain [Vibrio vulnificus MO6-24/O]
          Length = 530

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 78/172 (45%), Gaps = 8/172 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           KEL  +      L+  D ++ L N       I+      +  S++F D+D FK IND +G
Sbjct: 352 KELKSAERFARHLASHDSVTDLPNRTAVRQAIAKFLERKQPFSLLFIDLDGFKAINDEYG 411

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD ++  ++ +L+          R  G+EF       S QEA  +A  L + I    
Sbjct: 412 HQTGDLLLKAVAQRLLDTVAQEDMAARYAGDEFIVLLKNQSTQEATQIAQALLETIAI-- 469

Query: 208 INISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVV 256
             I    ++ I  S G+     +     + ++I+ AD A+Y AK +G+ RVV
Sbjct: 470 PVIVERKALVIGASIGLVTVDVETTSTNVDSLIHEADIAMYQAKSAGKGRVV 521


>gi|326317912|ref|YP_004235584.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374748|gb|ADX47017.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 442

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 57/190 (30%), Positives = 89/190 (46%), Gaps = 16/190 (8%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKL 129
           +I  L+  IS     ++ IS  +   L+  D L+GL N SAF +               +
Sbjct: 256 SIMSLVQDISA----KMEISRQQ-HYLANHDSLTGLHNRSAFHNRFERSLSEVRTRGGAV 310

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSS 188
           +++F D+D FK+IND  GH VGD+V+ +++ +L         V RLGG+EF         
Sbjct: 311 ALLFIDLDGFKKINDGHGHKVGDEVLRYVARRLAHAVRGNDTVARLGGDEFLVMLDTDVQ 370

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVA 247
           E  A  + + +   I  S+     G  + +  S G+A        I  ++ RADQA+Y A
Sbjct: 371 EDLAGQIGSRIISAI--SEPMDVGGHDVRVGASIGVAMHPPLAGDIELLMTRADQAMYAA 428

Query: 248 KKSGRNRVVC 257
           K+SG   V  
Sbjct: 429 KRSGPGCVRY 438


>gi|253689810|ref|YP_003019000.1| diguanylate cyclase with PAS/PAC and GAF sensors [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756388|gb|ACT14464.1| diguanylate cyclase with PAS/PAC and GAF sensors [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 608

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 91/206 (44%), Gaps = 15/206 (7%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G +  ++E L+ ++ ++ I +     + S+  E       +   +  D L+GL N S+F 
Sbjct: 407 GYDQTMIELLAPLVKTLGIIIH----ARSLEDERTQIEASLRFSAGHDFLTGLPNRSSFF 462

Query: 120 SSLG---------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
                           +K  +   DID FK IND +GH  GD V+  L+  + +      
Sbjct: 463 EQANAFFLHNQQNQQTDKSCLAIIDIDLFKNINDQYGHLAGDAVLKELAVLMRMSLRQED 522

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            V RLGGEEF       S Q A +    +RK IE   +      ++H TISAGIA     
Sbjct: 523 LVARLGGEEFIILLKDISYQTAMMTIERIRKAIEQHTLEY-DRQTLHFTISAGIAAYRSD 581

Query: 231 -EPISTIIYRADQALYVAKKSGRNRV 255
              +   I  AD  LY AK+ GRN V
Sbjct: 582 LASVEDWIQLADANLYAAKRQGRNCV 607


>gi|269793186|ref|YP_003318090.1| diguanylate cyclase with PAS/PAC sensor [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100821|gb|ACZ19808.1| diguanylate cyclase with PAS/PAC sensor [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 297

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 10/179 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           S S+ KE  ++   +  L+ +D L+ + N      +L S       +     ++ FDID 
Sbjct: 121 SESLTKEERLAI--LEGLAYVDQLTRVGNRRFLDDTLESILEDLKAHRWPFGVILFDIDR 178

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND +GH +GD+V+  ++  L     +   V R GGEEF         ++    A  
Sbjct: 179 FKSVNDTYGHQLGDRVLQAVASTLSSSIRSFDAVARYGGEEFVVMLRNVDREKLKRDAER 238

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           LR ++  + + +     +++T+S G      ++   +++ RAD  +Y +K++GRNR+  
Sbjct: 239 LRLLVSATWVTLGD-REVNVTVSGGATMARPEDTPESLLDRADSLMYRSKEAGRNRITL 296


>gi|126660384|ref|ZP_01731495.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Cyanothece sp. CCY0110]
 gi|126618305|gb|EAZ89063.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Cyanothece sp. CCY0110]
          Length = 822

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 101/208 (48%), Gaps = 17/208 (8%)

Query: 74  ISITISLLLGY---ISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSL--- 122
           I I I+L+ G    I G++L      +     +++S  +  D L+GL N       L   
Sbjct: 404 IDIVINLIRGQNNQILGTVLIFRDVTQASQLAHQLSWEASHDNLTGLANRRELEKQLSLA 463

Query: 123 ----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                + + +  + + D+D FK IND  GH  GD+++  +++ L     +   + RLGG+
Sbjct: 464 IESYKNEDVEHILCYLDLDQFKIINDTCGHVAGDELLKQVTNLLQTRVRSSDILARLGGD 523

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTII 237
           EFA    G S  +A  +AN+LR++++N +          + +S GI     + + I+++I
Sbjct: 524 EFALLLKGCSLGKAKTIANNLRQLVKNFRFTW-DNEIFSVGVSIGIVSINQEIQTITSVI 582

Query: 238 YRADQALYVAKKSGRNRVVCFSDIENNT 265
             AD A Y AK  GRN V  + + ++  
Sbjct: 583 NAADSACYTAKSRGRNCVYVYKESDDEA 610


>gi|254226534|ref|ZP_04920117.1| GGDEF domain protein [Vibrio cholerae V51]
 gi|125620938|gb|EAZ49289.1| GGDEF domain protein [Vibrio cholerae V51]
          Length = 685

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 10/190 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           L     S+ K   ++ ++++QL+  D L+GL N S  +  L        + +    + + 
Sbjct: 220 LASTFQSMWKGKELAESKLNQLAYYDSLTGLANRSLLLQKLSDAIETAQNSHSTGVLFYL 279

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND+ GH +GD++I  ++ ++           R+GG+EFA      S  +A  
Sbjct: 280 DLDRFKTINDSLGHTIGDQLIKAVALRMEAWTKNDYLSARIGGDEFAVLIPYLSPAKAEE 339

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRN 253
           +A  L  +I N           + T+S GI+           ++ +AD ALY AK SGRN
Sbjct: 340 VAKQLLTLISN--PYAVDDHQFYCTVSIGISVFPSVGSSNIDVLRQADTALYRAKASGRN 397

Query: 254 RVVCFSDIEN 263
           + + +     
Sbjct: 398 KFMFYEPEMQ 407


>gi|307131097|ref|YP_003883113.1| putative Heme-regulated two-component response regulator [Dickeya
           dadantii 3937]
 gi|306528626|gb|ADM98556.1| Putative Heme-regulated two-component response regulator [Dickeya
           dadantii 3937]
          Length = 460

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 84/159 (52%), Gaps = 7/159 (4%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ LLN           I+   S  +   +   DID+FK+INDN+GH  G+  +  ++
Sbjct: 301 DPLTNLLNRRFIPTIMRREIALAISSGKPFILAMIDIDHFKKINDNYGHETGNLTLKTIA 360

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
            ++     +  +V R GGEEF    + +   +AA++ + +R++I    I  ++   I +T
Sbjct: 361 TKIYESVRSSDYVFRYGGEEFMVLLVETQTSQAAMIFDSIRQLIAGLYIPATAEKGISVT 420

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           IS GIAE  +      +I +AD ALY AK +GRNR+  F
Sbjct: 421 ISVGIAEFDNHPDYQQLIKKADNALYQAKANGRNRIEIF 459


>gi|260683836|ref|YP_003215121.1| putative signaling protein [Clostridium difficile CD196]
 gi|260687496|ref|YP_003218630.1| putative signaling protein [Clostridium difficile R20291]
 gi|260209999|emb|CBA64027.1| putative signaling protein [Clostridium difficile CD196]
 gi|260213513|emb|CBE05232.1| putative signaling protein [Clostridium difficile R20291]
          Length = 408

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 116/287 (40%), Gaps = 35/287 (12%)

Query: 5   LKDFLSIWLCHEKNLESF-----SPHTFMIYFSIFFSI--FIATVIFIANIFLFYIGLTP 57
              F  +W C    L+       S  ++++  +  FS+  F  +VI     FLF     P
Sbjct: 124 YVTFFCLWGCVITLLDQLGGNDLSVFSYIMLAAAAFSVLKFGESVIVFGGCFLFLNLFLP 183

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELF----------ISYNRISQLSR-- 105
             G++ I     S ++ +  I+ L  ++S  + +               Y  IS ++   
Sbjct: 184 --GIQTIPGNEFSNIVNTFFITSLAIFVSTMLYRNRVFTYYDKLLISQQYEEISHINNLL 241

Query: 106 -----IDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
                 D L+ + N       L          E ++ +  DIDYFKQ NDN+GH  GD  
Sbjct: 242 NDKVMTDDLTKMNNRRYLEDILQKKLISHANQEPITGMMIDIDYFKQFNDNYGHQKGDYC 301

Query: 155 IAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  ++  ++           R GGEEF        E +A + +  LRKIIE+        
Sbjct: 302 LQNIAKVILDFTSSENEHAIRYGGEEFFICIFNCDETDAKLKSECLRKIIESCNFERDDV 361

Query: 214 PSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           P   +T+S G+  +       ++  I   D+ALY AK+ GRN V  +
Sbjct: 362 PLKCVTVSIGVYTKKIEKAITLNEFISNCDKALYTAKEQGRNCVAFY 408


>gi|297537599|ref|YP_003673368.1| PAS/PAC and GAF sensor-containing diguanylate
            cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297256946|gb|ADI28791.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Methylotenera sp. 301]
          Length = 1321

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 17/194 (8%)

Query: 86   SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
            +   + +   + + I QL+  D L+ L N    I  L              ++VF D+D 
Sbjct: 849  AFQDITQQKTAEDAIKQLAFYDVLTQLPNRRLLIDRLERALVSSARSESYGALVFIDLDN 908

Query: 139  FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ------EA 192
            FK +ND  GH +GD ++  ++ +L         V R GG+EF         +        
Sbjct: 909  FKTLNDTLGHDMGDALLKHVALRLQSCLRDCDTVARFGGDEFVVMLENLDLEPTAAKSHV 968

Query: 193  AILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSG 251
             ++   +   +  S   +  G   + T S G        + +   + RAD A+Y AK +G
Sbjct: 969  EMVGAKIIHALNQSYEIVPDGH--YSTPSLGATIFYGKNDTVDEALKRADIAMYQAKSAG 1026

Query: 252  RNRVVCFS-DIENN 264
            RN +  F  +I+ N
Sbjct: 1027 RNCLRFFDPEIQAN 1040


>gi|312198096|ref|YP_004018157.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EuI1c]
 gi|311229432|gb|ADP82287.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EuI1c]
          Length = 778

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 16/180 (8%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQIN 143
           +L  +  S   +   +  D L+GL N + F   L        +   ++V+ D+D FK++N
Sbjct: 336 LLASVEASRQELRYQALHDPLTGLANRALFADRLQHALAFRESRPFALVYCDLDDFKRVN 395

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA---LGSSEQEAAILANDLR 200
           D  GH  GD ++   + +L         + RLGG+EFA       G  E     LA  +R
Sbjct: 396 DTLGHAAGDSLLTTTAARLRAGVRPGDTIARLGGDEFAILLGDGHGDPEAACQRLAETIR 455

Query: 201 KIIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                    + +G    +  S G  IA+         ++  AD A+Y AK+ G+  +V +
Sbjct: 456 A------PTMLAGHPQPVGASLGLVIADAHSPPAADALLREADLAMYAAKREGKGGLVVY 509


>gi|238751566|ref|ZP_04613057.1| Diguanylate cyclase [Yersinia rohdei ATCC 43380]
 gi|238710284|gb|EEQ02511.1| Diguanylate cyclase [Yersinia rohdei ATCC 43380]
          Length = 370

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 113/245 (46%), Gaps = 11/245 (4%)

Query: 25  HTFMIYFSIF----FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL 80
            T +I F ++      +F  TV+ I    +   GL     L +  V    L+ +   + L
Sbjct: 114 FTSLILFKVWEKKNNRVFYTTVVLIVIYRVVAAGLLVPQALNWSQVMIYQLISV---LCL 170

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDID 137
            + Y + +  +    ++  +   + ID L+ L N ++    L    +  +   ++  D+D
Sbjct: 171 AICYHALNFNEHHIHTFFTMKFRASIDKLTQLNNRASVDYRLTTIYNNRQACGLMILDLD 230

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK +ND +GH  GD +++ +   L        FVGR GGEEF         Q    +A 
Sbjct: 231 HFKFVNDTYGHDAGDVMLSEIGRLLTEAIRDEDFVGRYGGEEFIIITHRHEPQTITAVAE 290

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +R+++EN  + + SG  I  T+S G +       +   +  AD+ALY AK+ GRN+VV 
Sbjct: 291 RIRQLVENLTVELPSGEKIKATMSIGASLYLPGMSMLKALKMADEALYQAKRQGRNQVV- 349

Query: 258 FSDIE 262
           +S + 
Sbjct: 350 YSRLM 354


>gi|171057021|ref|YP_001789370.1| diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6]
 gi|170774466|gb|ACB32605.1| diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6]
          Length = 679

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 11/186 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDI 136
            +S + +  L  +  + S  +  D L+GL N +  +         +       +++F D+
Sbjct: 234 LVSEADVSALKHTEAQASFQALHDALTGLPNRAHVMERFAQALADIRDAGMAAALIFIDL 293

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAIL 195
           D+FK +ND  GH  GD+++  ++ +L     +   V RLGG+EF           E   +
Sbjct: 294 DHFKDVNDTLGHAAGDELLVHVARRLRNAIRSSDQVARLGGDEFLILVASKDIVGEVERV 353

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
              + + I   Q    SG  + +T + G++        + T++  AD A+Y AK+ GRN 
Sbjct: 354 RQRISQAIA--QPLSLSGTEVRVTPTLGVSLYPRDGLDVETLLRNADLAMYCAKERGRND 411

Query: 255 VVCFSD 260
           +  + +
Sbjct: 412 MAYYEE 417


>gi|241113203|ref|YP_002973038.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861411|gb|ACS59077.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 665

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 66/262 (25%), Positives = 108/262 (41%), Gaps = 29/262 (11%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS 86
           FM+  ++FFS      +  + + L    +T            L+  +  I+      +++
Sbjct: 150 FMMGANLFFSFPFRLSVITSGLVLCAFFITIVEFFPSSETYKLAFGMFYISCFAFTSFVN 209

Query: 87  GSILKE-----LFISYNR------------ISQLSRIDCLSGLLNHSAFISSLGS----- 124
             +  E     L  +  R            + +LS  D L+G+ N  A    L       
Sbjct: 210 WRLNVERRNVLLNAAEARHQHWEASERGRSLLELSHTDYLTGIGNRRALDRRLDECWAAW 269

Query: 125 --YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFA 181
                  S+   D+D+FK+ ND +GH  GD+ +  +++ L  V G+    +GR GGEEF 
Sbjct: 270 KDERRDFSVFLIDVDFFKRFNDRYGHQEGDRCLTVIANALKAVVGSSDGMIGRYGGEEFI 329

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPS--IHITISAGIAERCH--KEPISTII 237
                +  + A  LA  +R  +E+  I     P     +T+S G+A       E +  I+
Sbjct: 330 VVMPAALPKVAMTLAEKIRMEVESLAIAHDERPDDMSTVTVSIGVAFTREKVGEKVERIV 389

Query: 238 YRADQALYVAKKSGRNRVVCFS 259
             AD ALY AK SGRN +  F 
Sbjct: 390 READLALYNAKASGRNCIRSFD 411


>gi|77918520|ref|YP_356335.1| sensory box histidine kinase [Pelobacter carbinolicus DSM 2380]
 gi|77544603|gb|ABA88165.1| sensory box histidine kinase [Pelobacter carbinolicus DSM 2380]
          Length = 581

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 11/170 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145
           L  +   + +++  D L+GL N    +  L    E        LS +  D+D FK IND 
Sbjct: 393 LKETNQVLRRIAITDDLTGLYNRGYLLKQLAGKIETAECQSGNLSTLLLDLDNFKWINDT 452

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GD V+   S            VGR GGEEF      +  ++  ++A  +RK I++
Sbjct: 453 FGHDFGDTVLEKASAIFRSCLRGTDLVGRYGGEEFLVILPDTDLEKGQLIAEGIRKSIQS 512

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + +  +     ITIS G+ +    E +  ++ RAD+ LY AK  GRNR+
Sbjct: 513 CRWDREN---FRITISGGLVQYA-GESVEMLLKRADKLLYQAKDLGRNRI 558


>gi|330889356|gb|EGH22017.1| sensory box protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 820

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 18/192 (9%)

Query: 83  GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           G +SG++L    ++  R     +S  +  D L+GL+N S F   L               
Sbjct: 348 GVVSGAVLVLHDMTQERQYIADLSWQAAHDPLTGLVNRSEFEHRLQRVLDGIDDQASSHC 407

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F D+D FK +ND  GH  GD+++  L   L         + RLGG+EF    +     
Sbjct: 408 LMFLDLDQFKLVNDTGGHAAGDELLRQLCRALPQGLRDGDTLARLGGDEFGVLLVDCPAD 467

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI---IYRADQALYVA 247
            A  +A  LR+I++     +  G     T+S G+ +    +  +T+   +  AD A Y+A
Sbjct: 468 TALDIAEGLREIVQTLHF-MWKGRPFMTTVSIGLVQL--GDTPATLEGSLSAADMACYMA 524

Query: 248 KKSGRNRVVCFS 259
           K+ GRNRV  +S
Sbjct: 525 KERGRNRVQVYS 536


>gi|327480416|gb|AEA83726.1| sensory box/GGDEF family protein [Pseudomonas stutzeri DSM 4166]
          Length = 708

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 9/185 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
             + E      ++ + +  D L+GL N           ++        L++VF D+D FK
Sbjct: 263 QDISERKHYQQQLERQANHDLLTGLPNRILLNDRIEQGLARAARLGYYLTLVFIDLDNFK 322

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH  GD+++  ++ +L         V R+GG+EF     G   + + +++   R
Sbjct: 323 FINDGLGHVAGDELLKSIAARLAGSLRGSDTVARVGGDEFVLVL-GDHYRISTVISLLER 381

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + E  +    +G    +  S G+A      E   T++  AD A+Y AKK GRN    F+
Sbjct: 382 VLNEIRRPATLAGREFQVGASLGVAMFPDDGEDAQTLLKHADIAMYAAKKRGRNNFQFFT 441

Query: 260 DIENN 264
              N 
Sbjct: 442 HDLNR 446


>gi|320323360|gb|EFW79448.1| sensory box protein [Pseudomonas syringae pv. glycinea str. B076]
          Length = 820

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 18/192 (9%)

Query: 83  GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           G +SG++L    ++  R     +S  +  D L+GL+N S F   L               
Sbjct: 348 GVVSGAVLVLHDMTQERQYIADLSWQAAHDPLTGLVNRSEFEHRLQRVLDGIDDQASSHC 407

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F D+D FK +ND  GH  GD+++  L   L         + RLGG+EF    +     
Sbjct: 408 LMFLDLDQFKLVNDTGGHAAGDELLRQLCRALPQGLRDGDTLARLGGDEFGVLLVDCPAD 467

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI---IYRADQALYVA 247
            A  +A  LR+I++     +  G     T+S G+ +    +  +T+   +  AD A Y+A
Sbjct: 468 TALDIAEGLREIVQTLHF-MWKGRPFMTTVSIGLVQL--GDTPATLEGSLSAADMACYMA 524

Query: 248 KKSGRNRVVCFS 259
           K+ GRNRV  +S
Sbjct: 525 KERGRNRVQVYS 536


>gi|300856234|ref|YP_003781218.1| putative response regulator [Clostridium ljungdahlii DSM 13528]
 gi|300436349|gb|ADK16116.1| predicted response regulator [Clostridium ljungdahlii DSM 13528]
          Length = 302

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 65/216 (30%), Positives = 102/216 (47%), Gaps = 15/216 (6%)

Query: 56  TPFYGLEYILVENLSLVII-----SITISLLLGYISGSILKELFISYNRISQLSRIDCLS 110
           T  Y +  I VE   L ++      +T S ++  I       +  + N I++L  +D L+
Sbjct: 88  TKVYMITAIPVEVDDLPVVLELLKDVTKSGVIENIENKDSDTIRHAVNHINELIVLDPLT 147

Query: 111 GLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            + N       L +        N+ LS++  DID+FK++ND +GH  GD+V+  ++  L 
Sbjct: 148 QVFNKRFIYERLPADIIKSLLNNKPLSLIMADIDFFKKVNDIYGHVAGDEVLKVIASILS 207

Query: 164 VVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                   +  R GGEEF      +SE  A  +A  +RK IEN+ IN   G SI +T S 
Sbjct: 208 ASVRKDVDWTARYGGEEFIICLKNASEDTAVKVAEKMRKAIENTIINY-EGASIKVTASF 266

Query: 223 GI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           G+            +I   D+ LY AK +GRN+V+ 
Sbjct: 267 GVKTLFNENLNEEDLIKEVDKKLYEAKNAGRNKVIA 302


>gi|254509795|ref|ZP_05121862.1| response regulator receiver modulated diguanylate cyclase
           [Rhodobacteraceae bacterium KLH11]
 gi|221533506|gb|EEE36494.1| response regulator receiver modulated diguanylate cyclase
           [Rhodobacteraceae bacterium KLH11]
          Length = 466

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 86/182 (47%), Gaps = 16/182 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144
            L  S  +    S ID L+GL N    + +L              +++  D+D+FK IND
Sbjct: 280 RLRASLRQGLSESLIDPLTGLHNRRYAMRALDQIAHQALETGRGFAVMLADLDHFKAIND 339

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD V+   + +L        FV R+GGEEF      ++ Q+A   A+ +   I 
Sbjct: 340 RFGHAAGDLVLTETARRLRTATNQSGFVARIGGEEFMIGLPDTAPQQALRQADVICDSIC 399

Query: 205 NSQINISSGP-SIHITISAGI--------AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  N+     SI +TIS G+          R    P++ +I  AD+ALY AKK+GRN+V
Sbjct: 400 QTPFNLPDHATSIPVTISVGVKLCTPPDLTWRDEASPVNRLIRSADKALYAAKKAGRNQV 459

Query: 256 VC 257
             
Sbjct: 460 HI 461


>gi|90420282|ref|ZP_01228190.1| GGDEF domain protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90335616|gb|EAS49366.1| GGDEF domain protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 363

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 97/218 (44%), Gaps = 17/218 (7%)

Query: 56  TPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR--------ISQLSRID 107
            PF  +  + V+N S + +     + +  + G ++   F+   R        +   +  D
Sbjct: 145 VPFLFILTVPVDNASQIFLRTIGPMTVADVIGVLVLGRFLCSERKAFVFGRALEAEASTD 204

Query: 108 CLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+ L N                   + +S++  DID FKQ+ND +GH VGD ++  ++D
Sbjct: 205 PLTLLPNRRHLERRTSEMVETARRSGQPISVLVIDIDRFKQVNDTYGHDVGDTILLKVAD 264

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
            +         + R GGEE   A   ++ + A   A  +R  ++  +I      S ++T+
Sbjct: 265 VVRDNVRKSDAIARFGGEEIVVAMADATPEAALQTAERIRLAVDE-KIFHGEQESGNVTV 323

Query: 221 SAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           S G+A +  ++     +   AD+AL++AK  GRNRV  
Sbjct: 324 SVGVATQQGEDLSFKRLFKAADEALFLAKDRGRNRVEV 361


>gi|37679601|ref|NP_934210.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37198345|dbj|BAC94181.1| GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 542

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 8/172 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           KEL  +      L+  D ++ L N       I+      +  S++F D+D FK +ND +G
Sbjct: 364 KELKSAERFARHLASHDSVTDLPNRTAVRQAIAKFLERKQPFSLLFIDLDGFKAVNDEYG 423

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD ++  ++ +L+   G      R  G+EF       S QEA  +A  L + I    
Sbjct: 424 HQTGDLLLKAVAQRLLDTVGQEDMAARYAGDEFIVLLKNQSTQEATQIAQALLETIAI-- 481

Query: 208 INISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVV 256
             I    ++ I  S G+     +     + ++I+ AD A+Y AK +G+ RVV
Sbjct: 482 PVIVERKALVIGASIGLVTVDVETTSTNVDSLIHEADIAMYQAKSAGKGRVV 533


>gi|261210896|ref|ZP_05925186.1| GGDEF family protein [Vibrio sp. RC341]
 gi|260839871|gb|EEX66471.1| GGDEF family protein [Vibrio sp. RC341]
          Length = 527

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 11/192 (5%)

Query: 76  ITISLLLGYISGSILKE-------LFISYNRISQLSRIDCLSGLLNHSAFISSLGS---Y 125
           + IS LL YI    L+E       +      +  L+  D L+G+ N   F   L      
Sbjct: 315 MIISFLLSYIMRMQLEEQQHLTAMIEDRTAELRYLAEHDSLTGIYNRRYFSRQLCRMLDE 374

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            +  +++ FD+D+FK+IND +GH  GD  +  +   +  +        RLGG+EFA  + 
Sbjct: 375 AQAFTLISFDVDHFKEINDTYGHLAGDHALQHVVHTVQKILMESDTFVRLGGDEFAILSS 434

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            +   E       +R+ +E+S   +S    + +TIS G +  C       I+   D  LY
Sbjct: 435 LTERNELVEYLEGIRQSVEHSPFIVSDELQLALTISIGASTNCQYTEPE-ILQSVDNQLY 493

Query: 246 VAKKSGRNRVVC 257
            +K  GRNRV  
Sbjct: 494 ESKSRGRNRVSI 505


>gi|289579240|ref|YP_003477867.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermoanaerobacter italicus Ab9]
 gi|289528953|gb|ADD03305.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermoanaerobacter italicus Ab9]
          Length = 792

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 11/185 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           S + + E     +++  ++  D L+ L     F+  L           +KL++ F D+D 
Sbjct: 317 SHTDITERKQMESKLKHMAFYDPLTDLPRREVFMDRLKIAMANAKRNGKKLAVFFLDLDN 376

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK IND+ GH +GD+++  ++ +L         V R+GG+EF          ++   +AN
Sbjct: 377 FKTINDSLGHHIGDRLLKKIAKKLKACLRESDTVSRVGGDEFVILLPDIIDIEDTNKVAN 436

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            + ++  N  I   +   +++TIS GIA    H +    I+  AD A+Y AK+ G+N   
Sbjct: 437 RILELF-NQPIKF-NNHELYVTISIGIAIYPDHGKNEKAIVKNADIAMYRAKRDGKNGFQ 494

Query: 257 CFSDI 261
            F  I
Sbjct: 495 YFDSI 499


>gi|222148531|ref|YP_002549488.1| GGDEF protein [Agrobacterium vitis S4]
 gi|221735517|gb|ACM36480.1| GGDEF protein [Agrobacterium vitis S4]
          Length = 334

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 85/179 (47%), Gaps = 8/179 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFG 147
               +   +++  D L+ L N  AF   +       S     S++  DID+FK+IND FG
Sbjct: 145 RRELDEYKRIANTDSLTRLANRRAFDERMAGLFNYPSTLTATSLMLIDIDHFKKINDTFG 204

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           HPVGDK++A ++  +        FV R GGEEFA    G  + E   L   +R  +EN+ 
Sbjct: 205 HPVGDKILATVAGVIRANAPRDAFVARAGGEEFAIIVEGMPDTEVFGLCERIRTNLENTL 264

Query: 208 I-NISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             N  +G +   +T+S G A   + +    +  R+D ALY AK +GRN    F      
Sbjct: 265 FRNSRTGVNYGPVTVSIGFALAANCQDPGELYSRSDIALYCAKNAGRNCSRPFEPGMRK 323


>gi|253701669|ref|YP_003022858.1| diguanylate cyclase [Geobacter sp. M21]
 gi|251776519|gb|ACT19100.1| diguanylate cyclase [Geobacter sp. M21]
          Length = 356

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 64/264 (24%), Positives = 111/264 (42%), Gaps = 20/264 (7%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60
           +T  +     I+L  +     F  +   +   I  S+    +IF + I    +G+     
Sbjct: 93  LTEQVLSAGEIFLIEDTEKTPFFKNPIALNEGI-RSLVCVPLIFQSRI----VGILYLDD 147

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
            +    +   + ++SI  S     I  + L      + R   L+  D L+GL NH  F  
Sbjct: 148 FKPREFDREKMNMLSILASFAAMAIHNATL------HKRTKLLAITDSLTGLHNHRYFKQ 201

Query: 121 -------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                      Y++  SI+  D+D FK  ND+FGH  GD+++AF+ + ++          
Sbjct: 202 YFRQEMGRAKRYHKPFSIIMMDVDDFKSYNDSFGHATGDRLLAFMGEIILQTIRGVDVAF 261

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEP 232
           R GGEEF      +   +A + A  LR+ ++    N    G    +T+S G+A       
Sbjct: 262 RYGGEEFIVLLPETKLDKAILAAERLRESVQAGTANRPVDGSGRGVTVSIGVASYPDNAD 321

Query: 233 -ISTIIYRADQALYVAKKSGRNRV 255
            +  +    D  LY+AK+ G+N+V
Sbjct: 322 KMDELFNIVDSLLYLAKRCGKNKV 345


>gi|296282551|ref|ZP_06860549.1| signal transduction response regulator [Citromicrobium
           bathyomarinum JL354]
          Length = 412

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 85/176 (48%), Gaps = 10/176 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           + L  +  R+  LS +D L+GL N                + + +L++V  D+D+FK+ N
Sbjct: 221 RRLMEANERLRALSDMDELTGLPNRRHLERVFHTVFETSLAADTELAVVMIDVDHFKRFN 280

Query: 144 DNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+ +  ++  L   + G    V R GGEEF A      E  A  LA+ +R  
Sbjct: 281 DTYGHIAGDRTLVQVARLLEKDLSGEGRTVARFGGEEFIAVLENMDEHAALTLADKVRSA 340

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           I    I         +T+S G+A R   +   + II RAD ALY AK++GRN V  
Sbjct: 341 IAKRSIT-GGDRRRSVTVSMGVALRNRADRSPTAIIERADAALYEAKQAGRNLVRL 395


>gi|291279090|ref|YP_003495925.1| hypothetical protein DEFDS_0689 [Deferribacter desulfuricans SSM1]
 gi|290753792|dbj|BAI80169.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 315

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 107/240 (44%), Gaps = 22/240 (9%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI 85
           TF+++ S F+ I +   I +    LFY+ ++       +++ +L     SI I LL+  +
Sbjct: 83  TFLVFDSKFYVIKVILAILLILFDLFYLNISILSTFSLMILYSL---FFSIFIKLLIDRL 139

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
                         I +LS  D L+GLLN   F+            Y +  +++  D D 
Sbjct: 140 -----------EEEIDELSITDDLTGLLNQKGFLKKFEEEYYRSVRYKKNFTVIMLDSDD 188

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
            K++ND +GH  G KVI F++D++        F  R GG+EF    + +      I A  
Sbjct: 189 LKKVNDTYGHKYGTKVILFIADEIKKNIRRTDFACRYGGDEFMICLVETPINNGKIFAER 248

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVC 257
           L+  I    +    G   ++T+S G+    H    S  ++   D+ALY AK  G+NRV  
Sbjct: 249 LKNNIAMKPVFTDKGRGFNVTVSVGVVGYPHTSEKSFELLDLVDKALYEAKNKGKNRVEI 308


>gi|229082515|ref|ZP_04214978.1| Sensory box/GGDEF [Bacillus cereus Rock4-2]
 gi|228700947|gb|EEL53470.1| Sensory box/GGDEF [Bacillus cereus Rock4-2]
          Length = 909

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
           Y+    + E      +I+ L+  D L+ L N  AF   L           +  +++F D+
Sbjct: 459 YLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKPFAVMFLDL 518

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAIL 195
           D FK IND  GH VGD ++  ++ +L  +  + M + RL G+EF        ++ +   +
Sbjct: 519 DRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQKI 578

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
           A+ +   + N    I +   + I+ S GIA      E   +I+  AD A+Y AK  G+N 
Sbjct: 579 ADRIVAAM-NEPFEIENQH-LQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 636

Query: 255 VVCFS 259
              ++
Sbjct: 637 SSLYT 641


>gi|167640924|ref|ZP_02399182.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193]
 gi|177652778|ref|ZP_02935151.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174]
 gi|254738759|ref|ZP_05196462.1| sensory box/GGDEF family protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|167511144|gb|EDR86532.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193]
 gi|172081812|gb|EDT66881.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174]
          Length = 567

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++        +  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF        + E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHKQDEMRQLATSVLSCFQA-- 250

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 251 PFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 305


>gi|163850760|ref|YP_001638803.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163662365|gb|ABY29732.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 811

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
           GS + +   +   I+ L+  D L+GL N + F    G           ++ +++ D+D F
Sbjct: 359 GSDVTQRREADAHIAYLATRDPLTGLSNRAVFHDVAGEACTASMSGGPRVHLLYLDLDGF 418

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND  GH  GD ++  ++D+L         V RLGG+EFA    G    EA ILA  +
Sbjct: 419 KKVNDTAGHCAGDDLLRQVADRLCASVDANAQVFRLGGDEFAILHRGRESAEAEILAEAV 478

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
             I    +  +  G    I +S GIA        +  ++ +AD ALY AK++GR R  CF
Sbjct: 479 --IASLHRPYLIEGMQAEIGVSIGIARAPQDATELQDLMRKADLALYTAKEAGRGRWHCF 536

Query: 259 S-DIENN 264
             D+E  
Sbjct: 537 EADLERR 543


>gi|71738020|ref|YP_275817.1| sensory box protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558573|gb|AAZ37784.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320327557|gb|EFW83569.1| sensory box protein [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 820

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 18/192 (9%)

Query: 83  GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           G +SG++L    ++  R     +S  +  D L+GL+N S F   L               
Sbjct: 348 GVVSGAVLVLHDMTQERQYIADLSWQAAHDPLTGLVNRSEFEHRLQRVLDGIDDQASSHC 407

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F D+D FK +ND  GH  GD+++  L   L         + RLGG+EF    +     
Sbjct: 408 LMFLDLDQFKLVNDTGGHAAGDELLRQLCRALPQGLRDGDTLARLGGDEFGVLLVDCPAD 467

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI---IYRADQALYVA 247
            A  +A  LR+I++     +  G     T+S G+ +    +  +T+   +  AD A Y+A
Sbjct: 468 TALDIAEGLREIVQTLHF-MWKGRPFMTTVSIGLVQL--GDTPATLEGSLSAADMACYMA 524

Query: 248 KKSGRNRVVCFS 259
           K+ GRNRV  +S
Sbjct: 525 KERGRNRVQVYS 536


>gi|70729605|ref|YP_259344.1| YaiC/YhcK/ArdA family protein [Pseudomonas fluorescens Pf-5]
 gi|68343904|gb|AAY91510.1| YaiC/YhcK/ArdA family protein [Pseudomonas fluorescens Pf-5]
          Length = 360

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 95/232 (40%), Gaps = 12/232 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
           FF    A  +    + L+  G  P +  +    +  + + +     L LGYI       L
Sbjct: 119 FFLAGSAAQVLGMGVALWLFG--PAFVAQTTPEQVYACLPMLTLYPLALGYICYQQAVTL 176

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNF 146
                 +  LSR D L+GLLNH A+   L              +I   DID+FK IND +
Sbjct: 177 GRHKRELLALSRTDSLTGLLNHGAWKDQLEIEFQRCKRQAHGGAIALIDIDHFKAINDTY 236

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD V+  LS  L          GR GG+EF           AA L   LR      
Sbjct: 237 GHVAGDVVLRQLSKLLRQNLRVSDQAGRYGGDEFCVILPDVPLAHAAELMEALRGRF--G 294

Query: 207 QINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
            +     P++ +++S G+A      +     +  ADQALY AK  GRN V C
Sbjct: 295 ALGYEQSPALQVSLSIGLAAFNPLHDDAMGWLNDADQALYAAKTCGRNNVTC 346


>gi|117920851|ref|YP_870043.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117613183|gb|ABK48637.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 341

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 6/177 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG----SYNEKLSIVFFDIDYFKQ 141
           + + +  L     +  +    D L+G LN  AF + L        E   ++  DID+FK 
Sbjct: 161 AQTEIDALKQKLEKSEKDVLYDALTGCLNRRAFDADLAGMLAQAPEGTCLILVDIDHFKA 220

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            NDN+GH +GD+V+  +S +L         + R GGEEFA     S  + A  LA  +R+
Sbjct: 221 FNDNYGHQLGDQVLKAVSKRLQEACRDGCKLYRFGGEEFAIIVPKSQLRIARQLAEAMRR 280

Query: 202 IIENSQI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +E   + +      I +IT S G+A+   K+    +I RAD  LY AK+ GRNRV+
Sbjct: 281 GLEKLSLKDRRKDQRIDNITASFGVAQWQEKQVAIHLIERADMLLYEAKRLGRNRVM 337


>gi|116690374|ref|YP_835997.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia
           HI2424]
 gi|254247564|ref|ZP_04940885.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
 gi|116648463|gb|ABK09104.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia
           HI2424]
 gi|124872340|gb|EAY64056.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
          Length = 790

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 101/208 (48%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVIIS-ITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +Y    N+ L++ S IT+++L  + ++  ++ +L      ++QL+  D L+GL N  A +
Sbjct: 302 DYTHTRNVYLLMTSFITLAMLAFFGVATGLIGKLLGREREMTQLAEYDLLTGLANRYATL 361

Query: 120 SSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
             L       +   +L ++F D+D FK +ND  GH  GD V+   + +L    G    + 
Sbjct: 362 RGLRNDVSMPASLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTASRLADAVGDEGSLA 421

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EF     G   E+ A  LA  + ++    +     G S  +  S GIA      E
Sbjct: 422 RIGGDEFVVVMKGDDVERRAVRLAEAIIRMF--GEPFDVRGSSFVLHASIGIALHTVANE 479

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +AD A+Y AK +G+N    ++
Sbjct: 480 SEIDLLKKADLAMYSAKDAGKNCYQFYA 507


>gi|229193553|ref|ZP_04320497.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876]
 gi|228589858|gb|EEK47733.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876]
          Length = 909

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 98/220 (44%), Gaps = 11/220 (5%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           +   + +  ++    I   +++ V I +   +   Y+    + E      +I+ L+  D 
Sbjct: 424 YSISLEIRAYHKSRDIYYLHVTAVPIFLKEKISGVYLMIKDITESKQQQEQINFLAYHDT 483

Query: 109 LSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ L N  AF   L           +  +++F D+D FK IND  GH VGD ++  ++ +
Sbjct: 484 LTELANRRAFHQHLEQAIARAKISKKPFAVMFLDLDRFKVINDTLGHRVGDLLLIAVAKR 543

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITI 220
           L  +  + M + RL G+EF        ++ +   +A+ +   + N    I +   + I+ 
Sbjct: 544 LERIATSNMKLARLAGDEFTILIENYKKKPDVQKIADRIVTAM-NEPFEIENQH-LQISP 601

Query: 221 SAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           S GIA      E   +I+  AD A+Y AK  G+N    ++
Sbjct: 602 SIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNGSSLYT 641


>gi|204927721|ref|ZP_03218922.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|204323063|gb|EDZ08259.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 663

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSESLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 394 VFSPEMNQ 401


>gi|254251770|ref|ZP_04945088.1| hypothetical protein BDAG_00967 [Burkholderia dolosa AUO158]
 gi|124894379|gb|EAY68259.1| hypothetical protein BDAG_00967 [Burkholderia dolosa AUO158]
          Length = 790

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVIIS-ITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +Y    N+ L++ S IT+++L  + ++  ++ +L      ++QL+  D L+GL N  A +
Sbjct: 302 DYYHTRNVYLLMTSFITLAMLAFFGVATGLIGKLLGREREMTQLAEYDLLTGLANRYATL 361

Query: 120 SSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
             L       S   +L ++F D+D FK +ND  GH  GD V+   + +L    G    + 
Sbjct: 362 RGLRNDVSMPSSLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVGDEGSLS 421

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EF     G   E+ A  LA  + ++    +     G S  +  S GIA      E
Sbjct: 422 RIGGDEFVVVMKGDDVERRAVRLAEAIIRMFA--EPFDVRGSSFVLHASIGIALHTVANE 479

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +AD A+Y AK +G+N    ++
Sbjct: 480 SEIDLLKKADLAMYSAKDAGKNCYQFYA 507


>gi|114321024|ref|YP_742707.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227418|gb|ABI57217.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 509

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 14/182 (7%)

Query: 90  LKELFISYNR----ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           ++E   +Y +    + + +R D L+GL N       L             L++V  D+D+
Sbjct: 320 VREQAQAYEQQVRELEERTRRDPLTGLYNRDQLFRRLQDEFTGAAMGGWPLTLVVLDLDH 379

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND +GH  GD+V+  +S  L         V R GGEEF     G   Q+A  +   
Sbjct: 380 FKQVNDEYGHLAGDQVLRRVSAVLHDAVRGEDVVARYGGEEFVLLLPGVHWQDAQRVVRR 439

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNRV 255
           + + +  + + +   P + +T SAG+A +    P     +++  ADQALY AK  GRNR+
Sbjct: 440 VLERVRGTDLGLKEAPQLRVTASAGLAVQEGGRPFVDTDSLVAAADQALYTAKNQGRNRL 499

Query: 256 VC 257
           V 
Sbjct: 500 VV 501


>gi|312966782|ref|ZP_07781000.1| protein gmr [Escherichia coli 2362-75]
 gi|312288246|gb|EFR16148.1| protein gmr [Escherichia coli 2362-75]
          Length = 632

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 190 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 249

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 250 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 308

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    + II  AD A+Y AK+ GR +   F
Sbjct: 309 --LTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 366

Query: 259 SDIENN 264
           +   N 
Sbjct: 367 TPEMNQ 372


>gi|257485858|ref|ZP_05639899.1| sensory box protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331012944|gb|EGH93000.1| sensory box protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 820

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 18/192 (9%)

Query: 83  GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           G +SG++L    ++  R     +S  +  D L+GL+N S F   L               
Sbjct: 348 GVVSGAVLVLHDMTQERQYIADLSWQAAHDPLTGLVNRSEFEHRLQRVLDGIDDQASSHC 407

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F D+D FK +ND  GH  GD+++  L   L         + RLGG+EF    +     
Sbjct: 408 LMFLDLDQFKLVNDTGGHAAGDELLRQLCRALPQGLRDGDTLARLGGDEFGVLLVDCPAD 467

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI---IYRADQALYVA 247
            A  +A  LR+I++     +  G     T+S G+ +    +  +T+   +  AD A Y+A
Sbjct: 468 TALDIAEGLREIVQTLHF-MWKGRPFMTTVSIGLVQL--GDTPATLEGSLSAADMACYMA 524

Query: 248 KKSGRNRVVCFS 259
           K+ GRNRV  +S
Sbjct: 525 KERGRNRVQVYS 536


>gi|229181548|ref|ZP_04308874.1| Sensory box/GGDEF [Bacillus cereus 172560W]
 gi|228601916|gb|EEK59411.1| Sensory box/GGDEF [Bacillus cereus 172560W]
          Length = 909

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 98/220 (44%), Gaps = 11/220 (5%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
           +   + +  ++    I   +++ V I +   +   Y+    + E      +I+ L+  D 
Sbjct: 424 YSISLEIRAYHKSRDIYYLHVTAVPIFLKEKISGVYLMIKDITESKQQQEQINFLAYHDT 483

Query: 109 LSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ L N  AF   L           +  +++F D+D FK IND  GH VGD ++  ++ +
Sbjct: 484 LTELANRRAFHQHLEQAIARAKISKKPFAVMFLDLDRFKVINDTLGHRVGDLLLIAVAKR 543

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITI 220
           L  +  + M + RL G+EF        ++ +   +A+ +   + N    I +   + I+ 
Sbjct: 544 LERIATSNMKLARLAGDEFTILIENYKKKPDVQKIADRIVTAM-NEPFEIENQH-LQISP 601

Query: 221 SAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           S GIA      E   +I+  AD A+Y AK  G+N    ++
Sbjct: 602 SIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNGSSLYT 641


>gi|310659136|ref|YP_003936857.1| diguanylate cyclase/phosphodiesterase [Clostridium sticklandii DSM
           519]
 gi|308825914|emb|CBH21952.1| Diguanylate cyclase/phosphodiesterase precursor (fragment)
           [Clostridium sticklandii]
          Length = 591

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 6/173 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFG 147
           +EL    + I  ++  D L+ L N  +F+  L S  E   + +I+F DID FK IND  G
Sbjct: 156 QELEKLKSHIEHMAYNDELTNLPNRRSFMERLSSELESKKEGAIIFLDIDNFKAINDTLG 215

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+++  ++ +L ++ G   F+ R GG+EF      + ++    LA  +  I +  +
Sbjct: 216 HVHGDELLNRVAYRLKLLLGANAFISRFGGDEFLILISDTDKESVENLAKSINDIFD--E 273

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             + +   I++  S GI         I+ +I  AD A+Y  K +GRN    F 
Sbjct: 274 PFLLNNNKINVDFSMGITFYPKDSSDINELIMNADTAMYQVKATGRNHYKFFD 326


>gi|188581430|ref|YP_001924875.1| diguanylate cyclase [Methylobacterium populi BJ001]
 gi|179344928|gb|ACB80340.1| diguanylate cyclase [Methylobacterium populi BJ001]
          Length = 406

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 92/192 (47%), Gaps = 13/192 (6%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDID 137
           L+G     +      +  R   LS+ D L+GL N  A    L ++      ++++  DID
Sbjct: 206 LVGLRVRMLRDMAEQARQRFQDLSQTDALTGLPNRRALDLCLDAWLSNGGSVAMLMIDID 265

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVF--GTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +FK+ ND+ GHP GD  +  +++ L             R GGEEFA     +   EAA L
Sbjct: 266 HFKRFNDSLGHPEGDICLRRVAETLAASTFAREDCLCARYGGEEFAVVLKEAGRAEAARL 325

Query: 196 ANDLRKIIENSQINISSGPSIH--ITISAGIAERCH------KEPISTIIYRADQALYVA 247
           A+DL + +    +       ++  +T S G+A          ++P + ++  AD+ALY+A
Sbjct: 326 ADDLVRAVAALGLRHPGRRDMYRIVTASIGVASTEPAGAGFREDPKAALVTMADRALYMA 385

Query: 248 KKSGRNRVVCFS 259
           K+ GRNR V + 
Sbjct: 386 KQGGRNRAVVYD 397


>gi|170025831|ref|YP_001722336.1| diguanylate cyclase [Yersinia pseudotuberculosis YPIII]
 gi|169752365|gb|ACA69883.1| diguanylate cyclase [Yersinia pseudotuberculosis YPIII]
          Length = 436

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 13/186 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQIND 144
           K L    + ++  +  D L+GL N + F   L          E  +++F D D+FK +ND
Sbjct: 249 KHLTQENDSLAYRAAHDSLTGLANRTFFEGRLSRTLNDCQPGEHTAVLFLDGDHFKDVND 308

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKII 203
           N+GH  GD V+  ++ ++  +      V RLGG+EFA       +  +   +A+ +   +
Sbjct: 309 NYGHAAGDLVLTTIAVRIRALLRETDLVARLGGDEFAVLLTPIHNLDDVLTIADHIIDSM 368

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAK---KSGRNRVVCFS 259
               I ++ G  I +++S GIA    H +    ++ RAD+A+Y AK   +SG+ R+  + 
Sbjct: 369 A-LPIILAEGCEITVSLSIGIAVYPDHAQTPEKLLQRADEAMYQAKKNFRSGK-RIFAYQ 426

Query: 260 DIENNT 265
               NT
Sbjct: 427 PNTTNT 432


>gi|332992824|gb|AEF02879.1| diguanylate cyclase [Alteromonas sp. SN2]
          Length = 304

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 86/180 (47%), Gaps = 16/180 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDN 145
           L +  + ++ LSR+D L+ LLN  A        +  +      +S +  DID+FK IND 
Sbjct: 124 LELKTDELTLLSRLDPLTNLLNRRAASADIRKLLDQVNRKFVPVSFLLIDIDFFKNINDK 183

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD+VI  LS  L         V R GGEEF      S++ +A +    L + I  
Sbjct: 184 HGHDVGDEVIGLLSKTLKAATRKTDVVARWGGEEFLIVLYNSTQDDARLYCKYLHERIAE 243

Query: 206 SQINISSGPSIHITISAGIAERCHKE-----PISTIIYRADQALYVAKKSGRNRVVCFSD 260
            + + +      IT+S G+ +    +      + T+I  AD ALY AK  GRNR V  +D
Sbjct: 244 MRYSRAD----RITVSIGVTQLPVPQRDTVLQVETLIKEADDALYRAKDEGRNRTVFHTD 299


>gi|261822842|ref|YP_003260948.1| diguanylate cyclase with PAS/PAC and GAF sensors [Pectobacterium
           wasabiae WPP163]
 gi|261606855|gb|ACX89341.1| diguanylate cyclase with PAS/PAC and GAF sensors [Pectobacterium
           wasabiae WPP163]
          Length = 610

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 93/206 (45%), Gaps = 15/206 (7%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G +  ++E L+ ++ ++ I +     + S+  +       +   +  D L+GL N S F 
Sbjct: 409 GYDQTMIELLAPLVKTLGIIIH----ARSLEDKRAQVEASLRFNAGHDFLTGLPNRSTFF 464

Query: 120 SSL---------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
                         + +K  +   DID FK IND +GH  GD V+  L+  + +      
Sbjct: 465 EQASAFFQLIQQNQHADKSCLAIIDIDSFKNINDKYGHLAGDAVLKELAMLMRMSLRQED 524

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            V RLGGEEF       S Q A +    +RK IE   +      S+H TISAGIA    +
Sbjct: 525 LVARLGGEEFIILLKDVSYQTAVMTIERIRKAIEQHTLEY-DRQSLHFTISAGIAAYRPE 583

Query: 231 -EPISTIIYRADQALYVAKKSGRNRV 255
              +   I  AD+ LY AK+ GRN V
Sbjct: 584 FASVEDWIQLADENLYSAKRQGRNCV 609


>gi|222080149|ref|YP_002540012.1| hypothetical protein Avi_8066 [Agrobacterium vitis S4]
 gi|221738794|gb|ACM39573.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 314

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 12/189 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVF 133
           +G  +   + +  I+ + I +++  D L+ L N  A                N KL ++ 
Sbjct: 125 IGIATFEDISDRKIAEDAIRRIAMEDPLTELANRRALHERWETEVTSAPTKANLKLGVLL 184

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEA 192
            D+D FK +ND  GH  GD+V+  ++D+L         VGR+GG+EF        S+ +A
Sbjct: 185 VDLDGFKPVNDRLGHEAGDQVLKMVADRLRNAVRDTDLVGRIGGDEFVVLLSSLQSDTQA 244

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSG 251
             + + +    +     +    +I +  S G++        ++ +I +ADQALY  K++G
Sbjct: 245 EAICDRINATFDA--PFVFDVETITLGASIGVSLYPQDATDLAGLIRQADQALYRRKRTG 302

Query: 252 RNRVVCFSD 260
           R     FS+
Sbjct: 303 RGGWEWFSN 311


>gi|158338258|ref|YP_001519435.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acaryochloris marina MBIC11017]
 gi|158308499|gb|ABW30116.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor, putative
           [Acaryochloris marina MBIC11017]
          Length = 911

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 87/185 (47%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDI 136
            ++   + ++    +++  ++  D L+ L NH+ F  +L +            +++F D+
Sbjct: 464 LLACEDISKVRSLTDQLHFMAHHDALTALPNHTLFRHTLEALIAKTADQPTPFAMLFIDL 523

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAIL 195
           D FK++ND+  H +G++++  ++ +L     +   V RLGG+EF       +S   AA +
Sbjct: 524 DGFKKVNDSLSHAIGNELLCQVAQRLQGAVTSSDTVARLGGDEFVVLLPRAASPDAAAKM 583

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A  + + +            I I  S GI+      +  S ++ +AD A+Y AK  GRN 
Sbjct: 584 AQAILQQLRT--PFHVQNHEIFIGGSIGISLYPAQGKTSSELMKQADLAMYRAKAQGRNN 641

Query: 255 VVCFS 259
              +S
Sbjct: 642 YQFYS 646


>gi|74312145|ref|YP_310564.1| hypothetical protein SSON_1634 [Shigella sonnei Ss046]
 gi|123617146|sp|Q3Z1N3|YDDV_SHISS RecName: Full=Diguanylate cyclase yddV; Short=DGC
 gi|73855622|gb|AAZ88329.1| conserved hypothetical protein [Shigella sonnei Ss046]
          Length = 460

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 281 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 339 EINDTWGHNTGDEILRKVSQAFYDNVHSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 399 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 456


>gi|330986674|gb|EGH84777.1| sensory box protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 820

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 18/192 (9%)

Query: 83  GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           G +SG++L    ++  R     +S  +  D L+GL+N S F   L               
Sbjct: 348 GVVSGAVLVLHDMTQERQYIADLSWQAAHDPLTGLVNRSEFEHRLQRVLDGIDDQASSHC 407

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F D+D FK +ND  GH  GD+++  L   L         + RLGG+EF    +     
Sbjct: 408 LMFLDLDQFKLVNDTGGHAAGDELLRQLCRALPQGLRDGDTLARLGGDEFGVLLVDCPAD 467

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI---IYRADQALYVA 247
            A  +A  LR+I++     +  G     T+S G+ +    +  +T+   +  AD A Y+A
Sbjct: 468 TALDIAEGLREIVQTLHF-MWKGRPFMTTVSIGLVQL--GDTPATLEGSLSAADMACYMA 524

Query: 248 KKSGRNRVVCFS 259
           K+ GRNRV  +S
Sbjct: 525 KERGRNRVQVYS 536


>gi|325121080|gb|ADY80603.1| response regulator PleD [Acinetobacter calcoaceticus PHEA-2]
          Length = 423

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 111/248 (44%), Gaps = 17/248 (6%)

Query: 22  FSPHTFMIYFSIFFSIFIATVI--FIANIFLFYI--GLTPFYGLEYIL-VENLSLVIISI 76
             P   +I+ +I +   I  +I  F +   ++++       Y  EY     ++ + +I +
Sbjct: 175 LYPIAALIWCAIRYKPIIVALITSFTSAYIIYHVSGHYLLLYPNEYFSNTISIRIGLIMM 234

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------- 129
           TI+ L       +  EL     ++      D L+  L    F+ S+    EK+       
Sbjct: 235 TIAPLTVSSISVLHSELI---QKLQHAIAHDELTSSLTRRQFLQSVRLLQEKVQKENKTS 291

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +    D+D+FKQ+NDN+GH +GD+ +      +  +      +GR GGEEFA     +++
Sbjct: 292 AFFMLDVDHFKQVNDNYGHQIGDRALQTCVTTIQNILHPHDLLGRFGGEEFAIFIADTTK 351

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVA 247
           + A  LA  +R  I    I I     I I +S GI+         I ++   AD ALY A
Sbjct: 352 ESAFELAEQIRIKISQQPIYIYGKLPIFIQVSIGISLYSPSSHRAIESLFKEADDALYQA 411

Query: 248 KKSGRNRV 255
           K+ GRNRV
Sbjct: 412 KRQGRNRV 419


>gi|146306844|ref|YP_001187309.1| diguanylate cyclase [Pseudomonas mendocina ymp]
 gi|145575045|gb|ABP84577.1| diguanylate cyclase [Pseudomonas mendocina ymp]
          Length = 386

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 15/242 (6%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS 86
           F++   +  ++  A  + +A I   ++   P       L+ N+  ++    I  +  Y+ 
Sbjct: 149 FLVGLRLSEALGCALAVLLAYIGAEWLAGLPLPR----LINNVLFLLFGNLIGAVGCYLL 204

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
               +E F+    +  L+  D L+GL N  +F               + L+++  DID+F
Sbjct: 205 EYKSREYFLISRLMRLLADRDSLTGLHNRRSFNRQFERLWRQAQRDGQSLALLLCDIDHF 264

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILAND 198
           K  ND++GH  GD  +  +   +      P     RLGGEEFA         EA   A  
Sbjct: 265 KAYNDHYGHQAGDTALQRVGALIEQAARRPLDMGVRLGGEEFALLLFDIGPDEARQRAEA 324

Query: 199 LRKIIENSQINISSGPSIHI-TISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
           LR+ +E + I   S  S  + T+S G+A         +S I  +AD+ALY AK  GRN+V
Sbjct: 325 LRQALEAAGIPHQSSDSAAVLTMSIGVACLSPGTEGELSQIYEQADRALYEAKAFGRNQV 384

Query: 256 VC 257
             
Sbjct: 385 AA 386


>gi|327482292|gb|AEA85602.1| diguanylate cyclase [Pseudomonas stutzeri DSM 4166]
          Length = 620

 Score =  177 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 60/196 (30%), Positives = 91/196 (46%), Gaps = 17/196 (8%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
            E LSL + + T  L          ++L      + Q +  D L+ L N    I  + + 
Sbjct: 417 AEQLSLAVEARTAEL------AQANRDLSEREIELKQAAFHDPLTELPNRRYLIERVEAA 470

Query: 126 -------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                   E ++++  D+D+FK IND  GH  GD ++  L  +L  +  +     RLGG+
Sbjct: 471 IAEAARRGESIALLLIDLDHFKPINDGHGHDAGDLLLRTLGQRLRGLVRSSDMAARLGGD 530

Query: 179 EFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTI 236
           EFA    G++ EQ+A  +A  L    E S      G S+ +T+S G A    H E  S +
Sbjct: 531 EFAILLTGATVEQDAGQVAERLLH--ELSLPVPYRGTSLAVTVSVGAAFFPHHAEEFSRL 588

Query: 237 IYRADQALYVAKKSGR 252
              AD+ALY AK+ GR
Sbjct: 589 YKAADEALYRAKQQGR 604


>gi|304404109|ref|ZP_07385771.1| diguanylate cyclase with GAF sensor [Paenibacillus curdlanolyticus
           YK9]
 gi|304347087|gb|EFM12919.1| diguanylate cyclase with GAF sensor [Paenibacillus curdlanolyticus
           YK9]
          Length = 639

 Score =  177 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 98/227 (43%), Gaps = 24/227 (10%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV-IISITISLLLGYISGSILKELFIS 96
            IA  I   +  +  I L       Y   EN  L+ ++S  I L +   S          
Sbjct: 429 LIAAPILSGSEVVGVI-LVGHRSPNYFSYENYKLLQVLSSHIGLAMSNAS---------L 478

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDK 153
           +  + ++   D L+GL         +     K    S++  DID FK IND +GH VGD+
Sbjct: 479 HAEVRRMVITDHLTGLSARHYLNDRIQRKQRKDRCGSLIVVDIDKFKSINDTYGHQVGDQ 538

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  +S+ +           R GGEE A        ++A  +A  +RK +E         
Sbjct: 539 ILMQVSETIKASIRETDIAARWGGEELAIYLPEIRREQAYRIAERIRKKVELETHP---- 594

Query: 214 PSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVC 257
               +T+S G++E   ++    + ++ YRAD ALY AK SGRNR+  
Sbjct: 595 ---SVTVSCGLSEWTFEDEKVSVESLFYRADMALYQAKNSGRNRIYI 638


>gi|228924036|ref|ZP_04087312.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228835526|gb|EEM80891.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 909

 Score =  177 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
           Y+    + E      +I+ L+  D L+ L N  AF   L           +  +++F D+
Sbjct: 459 YLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKPFAVMFLDL 518

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAIL 195
           D FK IND  GH VGD ++  ++ +L  +  + M + RL G+EF        ++ +   +
Sbjct: 519 DRFKVINDTLGHRVGDLLLIAVAKRLEKIATSNMKLARLAGDEFTILIENYKKKPDVQKI 578

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
           A+ +   + N    I +   + I+ S GIA      E   +I+  AD A+Y AK  G+N 
Sbjct: 579 ADRIVAAM-NEPFEIENQH-LQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNG 636

Query: 255 VVCFS 259
              ++
Sbjct: 637 SSLYT 641


>gi|148554415|ref|YP_001261997.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Sphingomonas wittichii RW1]
 gi|148499605|gb|ABQ67859.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Sphingomonas wittichii RW1]
          Length = 741

 Score =  177 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 12/181 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           ++L  + ++   L+  D L+GL N + F   L           E L++V+ D+D+FK +N
Sbjct: 305 RQLSAAKSQAQHLADHDPLTGLANRALFERRLNERLGEICLTGETLALVYVDLDHFKNVN 364

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKI 202
           D+ GHP GD++I  L+D L  +      V RLGG+EFA      +S   A  LA  + + 
Sbjct: 365 DHLGHPTGDQLIRALADILSELA-PGDVVARLGGDEFAIIHGSDNSAATAEQLARSIHRT 423

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +    I++ +G  + I  S G+A           ++ +AD ALY AK+ GR R   ++D 
Sbjct: 424 LAR-PIDLGNG-EVLIGASIGVAVAPQDGLDRVELVRKADIALYDAKRGGRRRHSFYADT 481

Query: 262 E 262
            
Sbjct: 482 M 482


>gi|159897326|ref|YP_001543573.1| diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890365|gb|ABX03445.1| diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 408

 Score =  177 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 9/168 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +S L+ ID L+G+ N  A    L           +  +++  DID FKQIND +GH  GD
Sbjct: 214 LSALASIDVLTGIANRRAINEYLEQAIAKWRRNQQGFAVIMLDIDCFKQINDRYGHHAGD 273

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L         +GR GGEEF       + Q+A ++A  LR+ I+  Q  + +
Sbjct: 274 SVLRHIALVLSEQVRINDLIGRWGGEEFLLIVDADTIQQATLMAERLRQAIQQ-QPTVWN 332

Query: 213 GPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              I  T+S GIA    H    + ++  AD ALY AK++G+NR + + 
Sbjct: 333 DQVIQHTVSIGIAVCGMHGFNEAQLLTAADLALYEAKETGKNRWIVYE 380


>gi|332716028|ref|YP_004443494.1| diguanylate cyclase [Agrobacterium sp. H13-3]
 gi|325062713|gb|ADY66403.1| diguanylate cyclase [Agrobacterium sp. H13-3]
          Length = 772

 Score =  177 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 12/187 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQI 142
           L+++     ++  ++  D L+GL N    + +L +  E LS       ++  D+D FK +
Sbjct: 311 LRQIRDMAQQLEHMAHHDALTGLPNRVLLMKTLENRLEHLSTSGQPFNVMLLDLDRFKAV 370

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSEQEAAILANDLR 200
           ND  GH  GD ++  ++ ++  V G    V RLGG+EFA       +  ++A  LA  + 
Sbjct: 371 NDTLGHAAGDALLVAVASRISSVLGENDMVSRLGGDEFAIIQAVTDNCREDAGALAKRVV 430

Query: 201 KIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +  S      G  I +  S GIA    H    + ++  AD  LY AK  G    V + 
Sbjct: 431 HAVSRS--FSLEGSHISVDTSIGIACAPDHGNSATQLLQHADLGLYRAKSMGCGFFVFYE 488

Query: 260 DIENNTC 266
              +   
Sbjct: 489 PGMDMAA 495


>gi|30260782|ref|NP_843159.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames]
 gi|47525907|ref|YP_017256.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183620|ref|YP_026872.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne]
 gi|165872950|ref|ZP_02217573.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488]
 gi|167635210|ref|ZP_02393526.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442]
 gi|170689008|ref|ZP_02880208.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465]
 gi|170708489|ref|ZP_02898931.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389]
 gi|190568528|ref|ZP_03021434.1| sensory box/GGDEF family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227816502|ref|YP_002816511.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684]
 gi|229604486|ref|YP_002865226.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248]
 gi|254684295|ref|ZP_05148155.1| sensory box/GGDEF family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254742030|ref|ZP_05199717.1| sensory box/GGDEF family protein [Bacillus anthracis str. Kruger B]
 gi|254754984|ref|ZP_05207018.1| sensory box/GGDEF family protein [Bacillus anthracis str. Vollum]
 gi|254762284|ref|ZP_05214128.1| sensory box/GGDEF family protein [Bacillus anthracis str. Australia
           94]
 gi|30254231|gb|AAP24645.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames]
 gi|47501055|gb|AAT29731.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177547|gb|AAT52923.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne]
 gi|164711304|gb|EDR16858.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488]
 gi|167529469|gb|EDR92220.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442]
 gi|170126610|gb|EDS95495.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389]
 gi|170666993|gb|EDT17756.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465]
 gi|190560322|gb|EDV14301.1| sensory box/GGDEF family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227006073|gb|ACP15816.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684]
 gi|229268894|gb|ACQ50531.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248]
          Length = 567

 Score =  177 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++        +  +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF        + E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHKQDEMRQLATSVLSCFQA-- 250

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 251 PFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 305


>gi|299531700|ref|ZP_07045105.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298720416|gb|EFI61368.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 397

 Score =  177 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 59/235 (25%), Positives = 114/235 (48%), Gaps = 14/235 (5%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           +++ S+ F+ +  T   I ++ L Y     F    Y L+  +S++  +I  ++++  I+ 
Sbjct: 153 LLWLSMIFTAYTLTRPMIISL-LGYPDPRSFPRSPYWLLTLVSILNFAILFTVVMTVIAA 211

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQI 142
                   +  ++ +   +D L+ +LN  +F               ++++  DID+FK+I
Sbjct: 212 ------KETVGKLQKERDLDTLTQILNRRSFHEYALKILTDMRLYPMAVLACDIDHFKRI 265

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GDKV+  +S  L         V R GGEEF    +  + ++A  +A  +R+ 
Sbjct: 266 NDTWGHEYGDKVLQLVSATLQNHVRERDLVARFGGEEFVILLIDIALRDAEEIAQRIRQD 325

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +++  + SG    +T+S GI+       +   +  ADQ LY AK +GR++V  
Sbjct: 326 LRSNKDLLLSGT--KLTMSFGISSITDPSQLDHALREADQLLYQAKNAGRDQVHV 378


>gi|238751630|ref|ZP_04613120.1| phosphodiesterase [Yersinia rohdei ATCC 43380]
 gi|238710192|gb|EEQ02420.1| phosphodiesterase [Yersinia rohdei ATCC 43380]
          Length = 875

 Score =  177 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 11/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S+  E  +S  +I QL+  D L+GL N S F+                L+++  ++D FK
Sbjct: 433 SLAMERELSRKQIQQLAFYDPLTGLPNRSQFLVYAQQAITLATESGHSLAVLVINLDRFK 492

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND+ GH  GD+++A ++ +L         +GRL G+EF   A   + Q+A +    L 
Sbjct: 493 QVNDSLGHAAGDELLAAIAQRLRHELSKNDLIGRLSGDEFIILAP-CTMQQATVKVEKLL 551

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++  SQ  I +  +I  + S GI+        +  ++  AD A++ AKK G      FS
Sbjct: 552 SLL--SQPCIIASVNIIPSASIGISLYPENGVGMDMLMNHADIAMHKAKKLGSGHFNFFS 609

Query: 260 DIENN 264
              NN
Sbjct: 610 VEMNN 614


>gi|322614960|gb|EFY11885.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322619400|gb|EFY16280.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623212|gb|EFY20054.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322628502|gb|EFY25290.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322638526|gb|EFY35221.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322645332|gb|EFY41860.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651785|gb|EFY48157.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654318|gb|EFY50640.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659284|gb|EFY55532.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322662715|gb|EFY58922.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322667674|gb|EFY63834.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671912|gb|EFY68033.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322677042|gb|EFY73106.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322680296|gb|EFY76335.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685275|gb|EFY81271.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323196175|gb|EFZ81334.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199334|gb|EFZ84428.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204792|gb|EFZ89788.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323205912|gb|EFZ90875.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323217239|gb|EGA01960.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323220168|gb|EGA04631.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225578|gb|EGA09806.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323232101|gb|EGA16208.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323234628|gb|EGA18715.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323238080|gb|EGA22139.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243317|gb|EGA27336.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248427|gb|EGA32362.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252533|gb|EGA36376.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255442|gb|EGA39208.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260844|gb|EGA44446.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267569|gb|EGA51052.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323271001|gb|EGA54432.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 660

 Score =  177 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSESLIRTADTAMYNAKEGGRGQFC 390

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 391 VFSPEMNQ 398


>gi|170748341|ref|YP_001754601.1| diguanylate cyclase [Methylobacterium radiotolerans JCM 2831]
 gi|170654863|gb|ACB23918.1| diguanylate cyclase [Methylobacterium radiotolerans JCM 2831]
          Length = 356

 Score =  177 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 7/169 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + E   + + +  ++  D L+GL N   F + L            +++  D+D FK +N
Sbjct: 147 DVTERCRAESLLRYMAHHDPLTGLPNRRLFAARLERTLADLDGAPCALLCLDLDGFKPVN 206

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH VGD ++  L+++L    G      RLGG+EF      ++   A   A  L+  +
Sbjct: 207 DRHGHAVGDALLRQLAERLRAALGAGDCAARLGGDEFTILLGDAAPAPALGFALRLQARL 266

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
                ++ +G  I I  + G+A    H     T++ RAD A+Y AK+ G
Sbjct: 267 AE-PYDLGTGSPIRIGAAIGVACAPLHAIRAQTLVERADAAMYAAKRLG 314


>gi|218528574|ref|YP_002419390.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Methylobacterium chloromethanicum CM4]
 gi|218520877|gb|ACK81462.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Methylobacterium chloromethanicum CM4]
          Length = 795

 Score =  177 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 11/183 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           I+   L+    + ++I  L+  D L+GL N ++F   L            KL+++  D+D
Sbjct: 346 IAVRDLRARRQAESQIQFLAHHDALTGLANRASFGQRLDQEMRAADAGERKLALLCLDLD 405

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK++ND FGH  GD ++  ++  +         + RLGG+EFA         EA  LA 
Sbjct: 406 RFKEVNDLFGHAAGDAMLESVARIVTGELDDTQMMARLGGDEFAVLMPCGGPSEAGRLAE 465

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            + + + + + + + GP   I  S G+A         + ++  AD ALY AK  GR    
Sbjct: 466 RILEALRSGRAD-TGGP--QIATSIGVALYPDDALEQAALLSYADTALYRAKSEGRGTYR 522

Query: 257 CFS 259
            F 
Sbjct: 523 FFE 525


>gi|110679010|ref|YP_682017.1| GGDEF/EAL domain-containing protein [Roseobacter denitrificans OCh
           114]
 gi|109455126|gb|ABG31331.1| GGDEF/EAL domain protein [Roseobacter denitrificans OCh 114]
          Length = 619

 Score =  177 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 18/190 (9%)

Query: 90  LKELFISYNRISQLS-------RIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFD 135
           ++ L     R+ QL+         D L+GL N   F       I +L  +  + ++++ D
Sbjct: 152 VERLEKENTRLHQLAKSVAKDANEDALTGLSNRRHFEVELKTWIENLKKHGTEFAVIYID 211

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D FK +ND  GH  GD+++  ++D L  + G    V RLGG+EF         Q A  +
Sbjct: 212 LDRFKFVNDTLGHDAGDRLLVSVADMLRDLTGDCDLVARLGGDEFVILRP--LAQSALNI 269

Query: 196 ANDLRKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           ++    I+   Q   +  G S   + S G+A    H E    ++  AD+ALY AK  G+ 
Sbjct: 270 SSLADDIVGTMQAPFACDGKSTACSASVGVAIANKHMEHPEQVVADADEALYHAKSQGKG 329

Query: 254 RVVCFSDIEN 263
           R   F++  +
Sbjct: 330 RWSFFTEEMH 339


>gi|95931204|ref|ZP_01313925.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95132723|gb|EAT14401.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 496

 Score =  177 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 88/197 (44%), Gaps = 11/197 (5%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
           + L   +    + E      RI QL+  D L+ L N S     L          N  L++
Sbjct: 151 AFLCSQVVMVDMTEKQRDEQRIRQLAYEDTLTQLPNRSGLEILLRQALKISQQDNTPLAV 210

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
              D+D+FKQIND  G  VG++V+  ++ +L         V RLGG+EF       +   
Sbjct: 211 FSLDLDHFKQINDTLGSKVGNQVLEQIAQRLKEHINDRQIVARLGGDEFVIVIPDKTSAS 270

Query: 192 AAIL-ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKK 249
           A  L A+ L K +  S+    +   +  ++S GIA     E  + T++  A+QA+Y  K+
Sbjct: 271 ALRLNADILLKRL--SEPLTINHQELFTSVSIGIAIAPQGETDVDTLLGNANQAMYQVKR 328

Query: 250 SGRNRVVCFSDIENNTC 266
           +GRN    F+   +   
Sbjct: 329 NGRNDYAFFTRQMSEQA 345


>gi|78485721|ref|YP_391646.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78364007|gb|ABB41972.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2]
          Length = 411

 Score =  177 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 77/260 (29%), Positives = 115/260 (44%), Gaps = 35/260 (13%)

Query: 2   TRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL 61
           T +L   +S+WL         S             +   TV+F+  +FL   GL  FY  
Sbjct: 159 TAALIAMVSVWLILMLRNALLSQ----------PKVLDRTVVFV--LFLMGFGLNAFYQF 206

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
                 +++ V       LLL  I  +              ++  D L+GL    A + S
Sbjct: 207 G-----SIAWVSSFAATMLLLSLIFDA------------HHIAYTDQLTGLNGRRALLES 249

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                 K SI   DID+FK  ND +GH VGD V+  ++ +L ++  +   V R GGEEF 
Sbjct: 250 FLGLGRKYSIAMMDIDHFKSFNDTYGHDVGDAVLRTVAYELSLI--STGQVYRYGGEEFT 307

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINIS-SGPSI--HITISAGIAERCHK-EPISTII 237
               G   Q+       +R  IEN  + +   G  +   +T+S G+AER  + +    ++
Sbjct: 308 VVFKGKQAQQVKPALEAVRYAIENRVLEVEKQGQPVETKVTVSFGLAERNDQFKKPEEVM 367

Query: 238 YRADQALYVAKKSGRNRVVC 257
             AD+ALY AKKSGRNR+V 
Sbjct: 368 KAADEALYQAKKSGRNRIVV 387


>gi|109898570|ref|YP_661825.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Pseudoalteromonas atlantica T6c]
 gi|109700851|gb|ABG40771.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Pseudoalteromonas atlantica T6c]
          Length = 780

 Score =  177 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 81/194 (41%), Gaps = 12/194 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFF 134
             YI+ SI  E   + + I   +  D L+ L N +     L            +++++F 
Sbjct: 330 FAYIT-SIAIERQNNSDLIWHQANFDELTQLPNRNIMGEHLKQALNVAKRNQTQVAVLFL 388

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAA 193
           D+D FK IND  GH VGD ++   + ++         V RLGG+EF              
Sbjct: 389 DLDNFKDINDTLGHSVGDDLLVDCAQRIKDCIRHKDIVARLGGDEFVVIINDIVDFSGLE 448

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252
             A  + K +  S+        +H + S GI       + +S+++  ADQA+Y AK  G+
Sbjct: 449 KTAQKILKGL--SRPYHLQSEIVHTSASIGITIYPDDADDVSSLLKNADQAMYGAKAIGK 506

Query: 253 NRVVCFSDIENNTC 266
           N    ++    +  
Sbjct: 507 NNYHYYTKNMRDAA 520


>gi|320199323|gb|EFW73914.1| hypothetical protein ECoL_03423 [Escherichia coli EC4100B]
          Length = 652

 Score =  177 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 91/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +      + N K+ +V+ D+D FK
Sbjct: 210 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDYAINHADNNKVGVVYLDLDNFK 269

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 270 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 328

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GIA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 329 --LTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 386

Query: 259 SDIENN 264
           +   N 
Sbjct: 387 TPEMNQ 392


>gi|304312444|ref|YP_003812042.1| hypothetical protein HDN1F_28160 [gamma proteobacterium HdN1]
 gi|301798177|emb|CBL46399.1| Hypothetical protein HDN1F_28160 [gamma proteobacterium HdN1]
          Length = 860

 Score =  177 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 75/183 (40%), Gaps = 11/183 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQIN 143
            +L  +   I +L+  D L+ L N           I S        +  F D+D FK IN
Sbjct: 417 TDLHFARETIERLAYYDELTALPNRRLSHDRLQHAIDSAQRDGHAFAFCFLDLDGFKSIN 476

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKI 202
           D  GH  GD ++  +S +L         V RLGG+EF        +  +A ++   +  I
Sbjct: 477 DFMGHEAGDVLLKTVSQRLKQCIRAKDTVARLGGDEFTLILRDIRNPHDATVVVEHV--I 534

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              S+        + +T S GIA        I+T+   AD A+Y AK  G+N    F+  
Sbjct: 535 YALSRPVKIQDTEVAVTTSVGIALYPEDGLDIATLTRNADMAMYHAKAQGKNTYRFFTAE 594

Query: 262 ENN 264
            N 
Sbjct: 595 LNE 597


>gi|320107390|ref|YP_004182980.1| diguanylate cyclase [Terriglobus saanensis SP1PR4]
 gi|319925911|gb|ADV82986.1| diguanylate cyclase [Terriglobus saanensis SP1PR4]
          Length = 408

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 108/235 (45%), Gaps = 11/235 (4%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVEN-LSLVIISITISLLLGYISGSILKELFIS 96
            IATV  ++    F +G         IL+++ L+L +++I    ++     S   +L  +
Sbjct: 168 VIATVATMSGHGPFVLGGGAVLSSRIILLQSFLTLSMLAIFSISVIQLERKSFQDKLKAA 227

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y ++  L+  D L+GL N   F   L             ++++  D D FK  ND+FGH 
Sbjct: 228 YEQMEYLATTDPLTGLTNRRRFEEFLEVEWARAYRMGSSVAMLMIDTDDFKLYNDSFGHL 287

Query: 150 VGDKVIAFLSD-QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            GD  +  +++  L +   +   + R GGEEF      ++   AA++A  +R  +E    
Sbjct: 288 AGDDCLTAIAEVTLPMKRRSTDVLARYGGEEFIFLLPINTLASAAVIAEAIRAGVEALYE 347

Query: 209 NISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDI 261
              S     +T+S G A       + +  +I  +D+ALY AK++GRNRV     +
Sbjct: 348 QEGSLLKRKVTVSIGCAAMVPGPGLFSKMLIEASDRALYRAKENGRNRVELAEPV 402


>gi|289208832|ref|YP_003460898.1| diguanylate cyclase/phosphodiesterase [Thioalkalivibrio sp. K90mix]
 gi|288944463|gb|ADC72162.1| diguanylate cyclase/phosphodiesterase [Thioalkalivibrio sp. K90mix]
          Length = 866

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 10/199 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
           V+I   +S LL  +    +K ++     +   +  D L+ L N   F       I     
Sbjct: 412 VVIESILSTLLNLVGS--VKAIYKYTQDLEHYATRDPLTNLYNQRVFWELFNYEIKRAEG 469

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           +    +++  D+D FK IND +GH  GD+ +   S+ +         + R GG+EFA   
Sbjct: 470 HGYPFAVMVVDLDNFKTINDRYGHAFGDRFLQAYSETIQGAIRNEDILARYGGDEFALIL 529

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQA 243
             + +Q A  LA  + +  +   +    G  +  T   GIA    H +    +   AD  
Sbjct: 530 PETDQQSAWQLAAHMAEATDGLSLPAPDGSRVRATTCIGIAAYPRHGKDTRDLFLVADNM 589

Query: 244 LYVAKKSGRNRVVCFSDIE 262
           +Y AK+ G+N V   SD E
Sbjct: 590 MYKAKREGKNAVCVPSDEE 608


>gi|190573974|ref|YP_001971819.1| putative transmembrane protein [Stenotrophomonas maltophilia K279a]
 gi|190011896|emb|CAQ45517.1| putative transmembrane protein [Stenotrophomonas maltophilia K279a]
          Length = 847

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 12/185 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK-LSIVFFDIDYFKQIN 143
           E   +  R++  +  D L+GL N    +  L               +++F D+D FK +N
Sbjct: 417 ERLRAEQRLTHQAMHDALTGLPNRLHLLDRLQDSLALAKREGGPVFAVLFLDLDRFKLVN 476

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKI 202
           D+ GH  GD+++  ++ ++V + G    V RLGG+EFA          +A      L   
Sbjct: 477 DSIGHAAGDRMLVEVAKRIVSMAGAEDVVARLGGDEFAVLLQCPQGLAQALDFGQRLLLA 536

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           ++ S     +G  +  + S GIA    +      ++  AD A+Y AK  G +R   F + 
Sbjct: 537 LQESM--WIAGRELFPSGSLGIALWNPRYRTGEELLRDADAAMYRAKAQGHDRCAIFDED 594

Query: 262 ENNTC 266
                
Sbjct: 595 MREEA 599


>gi|170733711|ref|YP_001765658.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia
           MC0-3]
 gi|169816953|gb|ACA91536.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia
           MC0-3]
          Length = 790

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 101/208 (48%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVIIS-ITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +Y    N+ L++ S IT+++L  + ++  ++ +L      ++QL+  D L+GL N  A +
Sbjct: 302 DYTHTRNVYLLMTSFITLAMLAFFGVATGLIGKLLGREREMTQLAEYDLLTGLANRYATL 361

Query: 120 SSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
             L       +   +L ++F D+D FK +ND  GH  GD V+   + +L    G    + 
Sbjct: 362 RGLRNDVSMPASLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTASRLADAVGDEGSLA 421

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EF     G   E+ A  LA  + ++    +     G S  +  S GIA      E
Sbjct: 422 RIGGDEFVVVMKGDDVERRAVRLAEAIIRMF--GEPFDVRGSSFVLHASIGIALHTVANE 479

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +AD A+Y AK +G+N    ++
Sbjct: 480 SEIDLLKKADLAMYSAKDAGKNCYQFYA 507


>gi|108810030|ref|YP_653946.1| hypothetical protein YPA_4040 [Yersinia pestis Antiqua]
 gi|145600440|ref|YP_001164516.1| hypothetical protein YPDSF_3185 [Yersinia pestis Pestoides F]
 gi|162419428|ref|YP_001605395.1| GGDEF domain-containing protein [Yersinia pestis Angola]
 gi|165927319|ref|ZP_02223151.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936365|ref|ZP_02224933.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008970|ref|ZP_02229868.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212136|ref|ZP_02238171.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401527|ref|ZP_02307021.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167418912|ref|ZP_02310665.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167468844|ref|ZP_02333548.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis FV-1]
 gi|186893943|ref|YP_001871055.1| diguanylate cyclase [Yersinia pseudotuberculosis PB1/+]
 gi|229836971|ref|ZP_04457136.1| putative exported protein [Yersinia pestis Pestoides A]
 gi|229840333|ref|ZP_04460492.1| putative exported protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229842413|ref|ZP_04462568.1| putative exported protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|294502546|ref|YP_003566608.1| hypothetical protein YPZ3_0436 [Yersinia pestis Z176003]
 gi|108781943|gb|ABG16001.1| hypothetical protein YPA_4040 [Yersinia pestis Antiqua]
 gi|145212136|gb|ABP41543.1| hypothetical protein YPDSF_3185 [Yersinia pestis Pestoides F]
 gi|162352243|gb|ABX86191.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis Angola]
 gi|165915481|gb|EDR34090.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920781|gb|EDR38029.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992309|gb|EDR44610.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206882|gb|EDR51362.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962906|gb|EDR58927.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048909|gb|EDR60317.1| putative diguanylate cyclase, GGDEF domain [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|186696969|gb|ACC87598.1| diguanylate cyclase [Yersinia pseudotuberculosis PB1/+]
 gi|229690723|gb|EEO82777.1| putative exported protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229696699|gb|EEO86746.1| putative exported protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229705914|gb|EEO91923.1| putative exported protein [Yersinia pestis Pestoides A]
 gi|262360576|gb|ACY57297.1| hypothetical protein YPD4_0388 [Yersinia pestis D106004]
 gi|262364522|gb|ACY61079.1| hypothetical protein YPD8_0389 [Yersinia pestis D182038]
 gi|294353005|gb|ADE63346.1| hypothetical protein YPZ3_0436 [Yersinia pestis Z176003]
          Length = 433

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 13/186 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQIND 144
           K L    + ++  +  D L+GL N + F   L          E  +++F D D+FK +ND
Sbjct: 246 KHLTQENDSLAYRAAHDSLTGLANRTFFEGRLSRTLNDCQPGEHTAVLFLDGDHFKDVND 305

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKII 203
           N+GH  GD V+  ++ ++  +      V RLGG+EFA       +  +   +A+ +   +
Sbjct: 306 NYGHAAGDLVLTTIAVRIRALLRETDLVARLGGDEFAVLLTPIHNLDDVLTIADHIIDSM 365

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAK---KSGRNRVVCFS 259
               I ++ G  I +++S GIA    H +    ++ RAD+A+Y AK   +SG+ R+  + 
Sbjct: 366 A-LPIILAEGCEITVSLSIGIAVYPDHAQTPEKLLQRADEAMYQAKKNFRSGK-RIFAYQ 423

Query: 260 DIENNT 265
               NT
Sbjct: 424 PNTTNT 429


>gi|90420642|ref|ZP_01228549.1| GGDEF domain protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90335370|gb|EAS49123.1| GGDEF domain protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 580

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 59/215 (27%), Positives = 90/215 (41%), Gaps = 14/215 (6%)

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCL 109
           L  + L P  G +Y   + L + +  +  ++ L   +  +          + +++  D L
Sbjct: 362 LGLLYLEPRDGEDYDPNQTLEIYLKMLAENIGLALANLRL-------RETLREMAMADPL 414

Query: 110 SGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GL N  A  S                S V  DID+FK+ ND+ GH  GD V+  + + L
Sbjct: 415 TGLANRRALDSRFAFEVAETERLGRSFSCVMLDIDHFKRFNDDHGHDAGDAVLRAVGETL 474

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             V      V R GGEEF     G   ++A      +R+ I    IN        IT+S 
Sbjct: 475 TGVTREAGMVFRYGGEEFVLLMPGLDCEQARERGEVVRQAINALTINHEGEVLGPITVSL 534

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           G+A        S ++  AD AL  AK +GRNR+  
Sbjct: 535 GLASAPEHCARSRLVQVADAALLEAKAAGRNRIHI 569


>gi|65318053|ref|ZP_00391012.1| COG5001: Predicted signal transduction protein containing a
           membrane domain, an EAL and a GGDEF domain [Bacillus
           anthracis str. A2012]
          Length = 569

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++        +  +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF        + E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHKQDEMRQLATSVLSCFQA-- 252

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 253 PFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 307


>gi|330502862|ref|YP_004379731.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328917148|gb|AEB57979.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 308

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 92/191 (48%), Gaps = 14/191 (7%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125
           L+ +   ++ LL  +  ++L      Y    Q +  D L+   N  A    L        
Sbjct: 120 LIQLESLLASLLFPLRNALL------YRTALQSALRDPLTDTGNRIAMDQVLQREVDLAR 173

Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
              + LS++  DID+FK INDN GH +GD+V+  ++  L         V R GGEEF   
Sbjct: 174 RNLQPLSLLMLDIDHFKTINDNHGHALGDEVLKAVAQTLKNQLRNVDMVFRYGGEEFLVI 233

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
             G+S   AA++   LR  +   Q  + +G  I ++IS G A     E   +++ RAD A
Sbjct: 234 LSGTSRDGAALVGERLRFAVLELQC-LDAGRPIDVSISLGCASLLPGESAESLLRRADNA 292

Query: 244 LYVAKKSGRNR 254
           LYVAK+ GRNR
Sbjct: 293 LYVAKREGRNR 303


>gi|307946815|ref|ZP_07662150.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Roseibium sp. TrichSKD4]
 gi|307770479|gb|EFO29705.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Roseibium sp. TrichSKD4]
          Length = 777

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 12/182 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
            SI  E   +   +  L+  D L+ L N   F   L S        NE+L++VF D+D F
Sbjct: 324 ASIAIEKMRADREVLHLAHHDMLTALPNRLKFKEKLDSLLVRCRNKNEQLALVFVDLDQF 383

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL--AN 197
           K +ND+FGH +GD+V+  ++ +L  +      V R GG+EF       S  + A++    
Sbjct: 384 KVVNDSFGHSIGDEVLKIIAKRLKTLSSKTDSVFRFGGDEFVILVENESVNKDALVPFLV 443

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           DLRK +  S+  +  G + H+T S G+A          T++ RAD A+Y AK +GR+   
Sbjct: 444 DLRKSL--SEAILVHGRTFHVTASLGVACFPDDGTDAETLVGRADSAMYKAKDAGRDVFK 501

Query: 257 CF 258
            +
Sbjct: 502 FY 503


>gi|260428378|ref|ZP_05782357.1| diguanylate cyclase [Citreicella sp. SE45]
 gi|260422870|gb|EEX16121.1| diguanylate cyclase [Citreicella sp. SE45]
          Length = 329

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 11/183 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQI 142
           S ++ + L  +     Q +  D L+GL N  A    L          +++  D+DYFKQ+
Sbjct: 142 SRTLNRRLQGAMLAAEQRAYTDTLTGLRNRRALDHVLQRLLLEGGNFALLHIDLDYFKQV 201

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRK 201
           ND  GH  GD+V+  ++  ++ +      V R+GG+EF    +G +     + LA  L  
Sbjct: 202 NDTHGHAAGDRVLQAVARVMLELTRKDDTVARIGGDEFVILLVGLTDRVRLSALAEQLIH 261

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPI----STIIYRADQALYVAKKSGRNRVVC 257
            IE   I +       ++ S GIA    K  +      ++ RAD ALY AK+ GR +   
Sbjct: 262 RIER-PIPVED-VECRVSASIGIAFGAPKAGVRPGAEELMERADSALYRAKRQGRAQ-HA 318

Query: 258 FSD 260
           F +
Sbjct: 319 FDE 321


>gi|262198873|ref|YP_003270082.1| diguanylate cyclase [Haliangium ochraceum DSM 14365]
 gi|262082220|gb|ACY18189.1| diguanylate cyclase [Haliangium ochraceum DSM 14365]
          Length = 316

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 12/185 (6%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVF 133
           +  +++GS ++  +  +  I +++ ID L+G  N   FI            + + L++V 
Sbjct: 126 IFKFLTGSNIESAY--HEEIYRMTIIDGLTGAYNKRYFIDFLERELARAHRHEQPLTLVM 183

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D+FK++ND+ GH  GD V+  LS ++           R GGEEFA    G++ +   
Sbjct: 184 LDLDHFKRVNDDLGHLAGDAVLKELSARVRPRIRREDLFARYGGEEFAVILTGTTLEGGV 243

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSG 251
             A  +R ++      + +G  I +T S G +   H        +I+RAD+ LY AK  G
Sbjct: 244 RFAEHVRSLVCERPF-LFNGQPIDVTTSLGASCMFHEPGVDAEQLIHRADENLYKAKDRG 302

Query: 252 RNRVV 256
           RNR V
Sbjct: 303 RNRSV 307


>gi|307943175|ref|ZP_07658520.1| putative diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Roseibium sp. TrichSKD4]
 gi|307773971|gb|EFO33187.1| putative diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Roseibium sp. TrichSKD4]
          Length = 713

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 13/187 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
              + E      RI   ++ D L+GL N + F   L         + ++ ++   D+D F
Sbjct: 272 ARDVSEEEAYTKRIRFQAKRDPLTGLANRTTFKKQLKRTFDDWMEHGDRATLFHLDLDKF 331

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND- 198
           K +ND +GH  GD+++  ++ +L  +      + RLGG+EFA        + A       
Sbjct: 332 KMLNDTYGHAFGDQILKVVARRLKTIPSEEATIARLGGDEFAIIDPALFRRVAIKDCAQA 391

Query: 199 -LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +R + E  +IN   G  I +  S G++           ++  AD ALY AKK+GRNR  
Sbjct: 392 LIRTLNEPLEIN---GTCIRLGCSIGVSVLPEDGATGEQLLGNADLALYSAKKAGRNRFH 448

Query: 257 CFSDIEN 263
            F+    
Sbjct: 449 FFTPQMR 455


>gi|297530308|ref|YP_003671583.1| response regulator receiver modulated diguanylate cyclase
           [Geobacillus sp. C56-T3]
 gi|297253560|gb|ADI27006.1| response regulator receiver modulated diguanylate cyclase
           [Geobacillus sp. C56-T3]
          Length = 535

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 74/176 (42%), Gaps = 9/176 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQI 142
           +  L     ++  L  +D L+ L N          F S    + +   I   D+D+FK+I
Sbjct: 220 VNRLVERKRQLEALLLVDELTRLYNRKYLPEAYRQFESERERHGDPYCIALLDLDHFKKI 279

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH VGD+V+   +  L           R GGEEF      + +Q+A  +   LR  
Sbjct: 280 NDQYGHLVGDEVLREFAALLRNGTRPNDLAFRFGGEEFLLFLPKTPQQDAIEVIERLRDQ 339

Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +   +       H T S GI E       +   + +AD ALY AK  GR+R V 
Sbjct: 340 FRSRSFS-GGNKVFHCTFSCGIVEVNAGGAVLDDWLEQADAALYAAKNGGRDRTVV 394


>gi|332760383|gb|EGJ90673.1| protein gmr domain protein [Shigella flexneri K-671]
 gi|333019118|gb|EGK38408.1| protein gmr domain protein [Shigella flexneri K-304]
          Length = 289

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 91/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 64  SGTDITEERRTQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 123

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 124 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 182

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    +TII  AD A+Y AK+ GR +   F
Sbjct: 183 --LTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSATIIRHADTAMYTAKEGGRGQFCVF 240

Query: 259 SDIENN 264
           +   N 
Sbjct: 241 TPEMNQ 246


>gi|227818393|ref|YP_002822364.1| hypothetical protein NGR_b01450 [Sinorhizobium fredii NGR234]
 gi|227337392|gb|ACP21611.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
          Length = 820

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 10/181 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQIND 144
           +E  ++  +I  ++R D L+GL N                   +++I+  D+D FK +ND
Sbjct: 377 QERLLAQKQIHHMARHDALTGLPNRQFLREEFERLSDQIAAGTRIAILCLDLDGFKAVND 436

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
            +G   GD ++  ++++L         + RLGG+EF    +G  S  EA +LA  L  +I
Sbjct: 437 AYGRATGDLLLRRVAERLQNCLRQSDILCRLGGDEFVVLRVGINSNAEARLLAQQLIDVI 496

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           E       +G  + + +  G+A     + P+  +I  AD AL  AK  GR   V +    
Sbjct: 497 EA--PYELAGTHVDLGVIVGLAAAPKGDQPVDELIKAADVALDRAKSGGRGTYVQYEPEM 554

Query: 263 N 263
           +
Sbjct: 555 D 555


>gi|331007208|ref|ZP_08330417.1| GGDEF domain-like protein [gamma proteobacterium IMCC1989]
 gi|330418975|gb|EGG93432.1| GGDEF domain-like protein [gamma proteobacterium IMCC1989]
          Length = 427

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 9/172 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQI 142
           + EL     +++ L+  D L+ LLN   F          L   N++ ++V  DID+FK +
Sbjct: 253 ITELNGMNEKLAILASRDPLTNLLNRRCFFERAEQELSRLKRNNKQAAVVIVDIDFFKVV 312

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GHP GD V+  +S  L         V R GGEEFA        ++A +LA  +RK 
Sbjct: 313 NDKYGHPAGDAVLTVISKILKNSVRQHDLVSRFGGEEFAIFLSDVDMEKAIMLAERMRKN 372

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           I   Q+ I  G  I  T S G++      + I+++I  AD+ LY AK+SGRN
Sbjct: 373 IAEQQV-IYKGDIIKSTASFGLSMLTSDSQDINSVINDADKLLYEAKESGRN 423


>gi|311103802|ref|YP_003976655.1| diguanylate cyclase [Achromobacter xylosoxidans A8]
 gi|310758491|gb|ADP13940.1| diguanylate cyclase, GGDEF domain protein 1 [Achromobacter
           xylosoxidans A8]
          Length = 265

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 8/181 (4%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFF 134
           +  IS      +    + + + S  D L+GLLN  A +  +               +   
Sbjct: 79  IARISDHYQSMMRDLNSALLETSNRDALTGLLNRRALMEMIKQEVLRVSRGGSTFVVAML 138

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D+FK +ND +GH  GD+ +  L+  L          GR GGEEF      +  + A  
Sbjct: 139 DVDHFKSVNDRYGHETGDRALVELAGALCNNLREYDLCGRWGGEEFLVLLPSTQPEAAQR 198

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           + + L   +    I +  G  + +T+S G+A     E  S  + RADQALY+AK+ GR+R
Sbjct: 199 VMDRLVGAVRALAITVGDGV-LGLTVSIGMAYHQLGETFSETLSRADQALYLAKQDGRDR 257

Query: 255 V 255
           V
Sbjct: 258 V 258


>gi|307308958|ref|ZP_07588641.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Sinorhizobium meliloti BL225C]
 gi|306900592|gb|EFN31205.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Sinorhizobium meliloti BL225C]
          Length = 770

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 12/191 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDID 137
           I    L     +   I  L+  D L+ L N S+F   L         +++ L+++  D+D
Sbjct: 322 IFVRDLTARKDAERTIEHLAHHDALTDLSNRSSFDRRLRQALAAAVHHDDALAVLCLDLD 381

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LA 196
            FK +ND FGH  GD+++  ++D L    G    + RLGG+EFA    G+++ EAA  LA
Sbjct: 382 RFKAVNDIFGHGEGDRILRKVADILRAGAGEADTIARLGGDEFAIVQTGAAQPEAARLLA 441

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + + K+             + + +S G+A           +   AD ALY AK++G+  +
Sbjct: 442 DRILKLFSEEMDTRRD--PMAVGVSIGVAICPGDGTTAERLYGNADTALYRAKQTGKG-I 498

Query: 256 VCFSDIENNTC 266
            CF D E +  
Sbjct: 499 ACFFDAEMDAA 509


>gi|254508626|ref|ZP_05120742.1| sensory box/ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219548477|gb|EED25486.1| sensory box/ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 626

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 64/188 (34%), Positives = 85/188 (45%), Gaps = 18/188 (9%)

Query: 84  YISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFF 134
           YIS  + + E      R+  LS  D L+ L N   F S L  Y         +   +   
Sbjct: 445 YISSLVDITERKKLEERLRILSEKDELTQLWNRRKFESELSKYAKLVDRYPRQTTCLALL 504

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK++ND  GH  GD+VI  +   L        FV R+GGEEFA     +S  EA +
Sbjct: 505 DIDHFKRVNDQQGHDEGDRVIKRVGVILQDTLRDTDFVARIGGEEFAVILPHTSLAEAEM 564

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             N LR  +E +       P + +TISAG+ +       S     AD ALY +K  GRN 
Sbjct: 565 ALNRLRVAVEIA-------PDLSVTISAGVTDLLADRTRS--YKCADIALYESKTLGRNL 615

Query: 255 VVCFSDIE 262
           V   S  E
Sbjct: 616 VSVCSSSE 623


>gi|313637199|gb|EFS02717.1| ggdef domain-containing protein [Listeria seeligeri FSL S4-171]
          Length = 319

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 105/232 (45%), Gaps = 11/232 (4%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           FS FIA +I      L+Y       G      E +  + +S    LL+ Y    I K   
Sbjct: 84  FSKFIALLILSFPAQLYYFINNFDGGHILQGFEIVEYLFLSFATGLLVFYACNYIDKSNL 143

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFG 147
           +    +++ +  D L+ L N   F                 LS+   DID+FK+IND  G
Sbjct: 144 V-IQTLTETAMTDSLTNLPNMRFFTQQFAWIFNKSLKKKAPLSLFIIDIDHFKEINDFHG 202

Query: 148 HPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  G+ V+A  S  L    F       R+GGEEFA         +AA++A+ +R+ IE +
Sbjct: 203 HQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVDATQAALIADHIREEIERA 262

Query: 207 QINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +   S  +TIS G+A   C      ++   ADQALY AK+SGRN++  
Sbjct: 263 KFPYTP-TSGQVTISIGVATANCSFSTTESLFEAADQALYQAKQSGRNQISV 313


>gi|311898487|dbj|BAJ30895.1| putative signaling protein [Kitasatospora setae KM-6054]
          Length = 1008

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 82/228 (35%), Gaps = 51/228 (22%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           ++   + E      ++   +  D L+ L N + F   + +           ++++F D+D
Sbjct: 454 LNSRDITERVRLQAQLQHNAFHDPLTDLPNRALFAHRVRAALSAQGPVGTAVAVLFLDLD 513

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILA 196
            FK +ND  GH VGD+++   + +L         V R GG+EFA    G     +   LA
Sbjct: 514 GFKAVNDTAGHQVGDELLVQAARRLQAAVRAEDTVARFGGDEFAVLVRGRLGHPQVRDLA 573

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH--------------------------- 229
             +R  +  S+     G  + +  S GIA                               
Sbjct: 574 ERIRGAL--SEPYWIGGAELGVAASIGIAFGPDTPLPVPEPAAPQDGPAGCRAAAGPCPG 631

Query: 230 --------------KEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                         +     ++  AD A+Y AK SG+ RVV ++    
Sbjct: 632 AERGERDRTGKDAAQTAADGLLRDADLAMYQAKSSGKGRVVLYTPAMR 679


>gi|312962636|ref|ZP_07777125.1| YaiC/YhcK/ArdA family protein [Pseudomonas fluorescens WH6]
 gi|311283011|gb|EFQ61603.1| YaiC/YhcK/ArdA family protein [Pseudomonas fluorescens WH6]
          Length = 365

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/184 (33%), Positives = 93/184 (50%), Gaps = 10/184 (5%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           + +G +   +  +L      +S LSRID L+GLLNH ++   L          + + +I 
Sbjct: 173 MAIGMVCYQLAIKLSEHKRALSALSRIDSLTGLLNHGSWKDLLHLKFHQCQQQHSQATIA 232

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK+IND  GH VGD V+  LS +L          GR GG+EF        ++EA
Sbjct: 233 LIDIDHFKRINDTHGHIVGDAVLRQLSLELRRNLRDDDLAGRYGGDEFCVILPQMRQEEA 292

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSG 251
           A     +R+I  N +      P + +++S G+A+        +  +  AD+ALY AK +G
Sbjct: 293 ARRMERMREIFSNYR--NPQIPELRVSLSIGLADYQPFFSDAAMWLNAADRALYAAKDTG 350

Query: 252 RNRV 255
           RNRV
Sbjct: 351 RNRV 354


>gi|294142460|ref|YP_003558438.1| GGDEF domain-containing protein [Shewanella violacea DSS12]
 gi|293328929|dbj|BAJ03660.1| GGDEF domain protein [Shewanella violacea DSS12]
          Length = 824

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 116/257 (45%), Gaps = 29/257 (11%)

Query: 32  SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN------------LSLVIISITIS 79
           ++ FS+ ++ ++ I   +   + L+    L  +L E+             SL++  + + 
Sbjct: 292 TLLFSLVLSGILVILAAWAPVVSLSRHATLLPMLAEHDFDTLKALSPKTSSLIVDEVDLI 351

Query: 80  LLLGYISGSILKELFISYNR----ISQLSRIDCLSGLLNHSAFISSL-------GSYNEK 128
            +        L+ L +  +     + +L+ +D L+GL N +     L       G  ++K
Sbjct: 352 NIATLNLAERLQNLELEVDEYTCELERLAMLDTLTGLPNKAMLNHELKKTIACVGRIHDK 411

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS- 187
           ++++F D+D FK+IND  GH  GD+++  ++ +L         V R GG+EF     G  
Sbjct: 412 IALMFLDLDEFKRINDTLGHSQGDELLKIVAKRLNHSVRAMDTVFRQGGDEFLILLRGIR 471

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALY 245
           SE++   + + +   ++  Q  +     + +T S G+A  C    +    +I  AD A+Y
Sbjct: 472 SEEDVRKVIHKIFACLQ--QPIVLGHHKLIVTTSIGVA-YCESNNVRAEELIKYADLAMY 528

Query: 246 VAKKSGRNRVVCFSDIE 262
            AK +GR+    F+   
Sbjct: 529 QAKDAGRSNYRVFTQEM 545


>gi|254441345|ref|ZP_05054838.1| GGDEF domain protein [Octadecabacter antarcticus 307]
 gi|198251423|gb|EDY75738.1| GGDEF domain protein [Octadecabacter antarcticus 307]
          Length = 463

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 14/168 (8%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           + +  D L+GL N    +  L            K +I+  D+D+FK IND +GH VGD++
Sbjct: 291 EAAITDPLTGLFNRRYAMPHLSRLSAQSRKSGRKFAIMVLDLDHFKAINDTYGHKVGDEI 350

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSG 213
           +   + +L         + R+GGEEF  A   S    A   A  LR++I  +   +    
Sbjct: 351 LRQTASRLQDNLRAVDLLARIGGEEFLVAIPNSDVFHARTAAERLRELIGGAPFFVGPDQ 410

Query: 214 PSIHITISAGIAERCHKEPIS------TIIYRADQALYVAKKSGRNRV 255
             + +T+S G++    ++P         ++  AD ALY AK  GRN+V
Sbjct: 411 KEVRVTMSVGVSLSDGQDPKDMVDDLGELVNAADVALYAAKNGGRNKV 458


>gi|118593589|ref|ZP_01550966.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Stappia
           aggregata IAM 12614]
 gi|118433807|gb|EAV40467.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Stappia
           aggregata IAM 12614]
          Length = 722

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/259 (23%), Positives = 116/259 (44%), Gaps = 38/259 (14%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL----------------LLGYIS 86
           IFI  + L +     F+  E  +    +L   + T+S                 +L    
Sbjct: 186 IFITLVLLIFCVPVTFHFAENFVRPIKALTQTAHTVSAGNFDAPFPVQRTDEIGVLARAY 245

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
             ++  +  +  RI +L+ +D ++ L N  +F       + +      ++S++F D+D F
Sbjct: 246 RDMVGTIRSNMARIHELAYLDPVTRLPNRESFRLHFNSNMQTADGTPVRMSVLFIDLDRF 305

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-----------FVGRLGGEEFAAAAL-GS 187
           K++ND++GH  GD ++  ++ +L  +  +              V RLGG+EFA       
Sbjct: 306 KRVNDSYGHDHGDALLKEVASRLRRLLNSADRAGEAPPAFPPLVARLGGDEFAIVIPAEK 365

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYV 246
                  LA++L + +E  Q    +G ++ +  S G++      E  + I+  AD A+Y 
Sbjct: 366 PMANVYTLADELVQCVE--QPLEINGLTMAVGASIGVSTYPDDGEDYTAILKNADIAMYA 423

Query: 247 AKKSGRNRVVCFSDIENNT 265
           AK++G NR   F++IE ++
Sbjct: 424 AKRTGGNRACFFNEIERDS 442


>gi|295703132|ref|YP_003596207.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium DSM 319]
 gi|294800791|gb|ADF37857.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium DSM 319]
          Length = 178

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 86/168 (51%), Gaps = 11/168 (6%)

Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           LS  D L+GL N  +    L           E LS + FDIDYFK  ND +GH  GD+ +
Sbjct: 2   LSMKDGLTGLNNRRSLDKQLEIEWKYARKEKEPLSFLLFDIDYFKAYNDTYGHIQGDECL 61

Query: 156 AFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
             +++     VF    FV R GGEEF      +++ EA  +A  +R+ +E   I   +  
Sbjct: 62  KEVANIAKSLVFDESAFVARYGGEEFGILLPRANQYEAIKMAEAIRQQVEQRAIIHQASD 121

Query: 215 SIH-ITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFS 259
               +TIS GI      E I   +I++ ADQALY AK++GRNR+  +S
Sbjct: 122 VFKCVTISVGIMTVVPSENIQLISIVHGADQALYEAKRTGRNRISVYS 169


>gi|262402458|ref|ZP_06079019.1| GGDEF family protein [Vibrio sp. RC586]
 gi|262351240|gb|EEZ00373.1| GGDEF family protein [Vibrio sp. RC586]
          Length = 438

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 18/230 (7%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102
           +F+A + ++         LE  +  N   V+ +      L  ++ S    L     +  +
Sbjct: 219 LFLAMLIMWAAAGAWLSALE--IRRNRREVLRARMRQEHLQRLNHS----LHEQNMKFVE 272

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++  D L+G +N       L            + S++F DIDYFK++ND +GH +GD ++
Sbjct: 273 MAHRDALTGAINRHGIRDWLQDQARLVRWQLNQFSVLFIDIDYFKKVNDIYGHSLGDDLL 332

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +  L         + R GGEEF      +S ++A  LA+ LR  +E+ +        
Sbjct: 333 REFALVLNREIRESDKLVRWGGEEFVVFCAQTSLEQAVELADRLRARVEDHRWIHGGD-- 390

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             +T S GIA+    E ++  + RAD+ALY AK+ GRNR+     +  N+
Sbjct: 391 --LTCSIGIAQM-GDERVTETVSRADEALYRAKRLGRNRIEVHYGLMANS 437


>gi|153002170|ref|YP_001367851.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|151366788|gb|ABS09788.1| diguanylate cyclase [Shewanella baltica OS185]
          Length = 302

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 78/178 (43%), Gaps = 9/178 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
            S + +      ++ QLS  D L+GL N       L         +    SI+  D+D+ 
Sbjct: 122 ASNISKRHELELQLRQLSDTDQLTGLYNRRRLERDLTVQFDTFQRHRTPTSILILDLDHL 181

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND  GH  GDK+I  +++     F       R GG+EF  A  G  + +A   A  L
Sbjct: 182 KSINDQLGHHAGDKIIIAVAETCRTQFRKTDSAYRFGGDEFVIALPGVEQFQAVKFAEYL 241

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256
                 S +   +   +  T+S G+A            + RAD ALY AK++G+NRV+
Sbjct: 242 CDCF-YSALQQHAVYGLFATVSIGVASIEALDTSYEDTLKRADAALYQAKRNGKNRVI 298


>gi|90419569|ref|ZP_01227479.1| response regulator [Aurantimonas manganoxydans SI85-9A1]
 gi|90336506|gb|EAS50247.1| response regulator [Aurantimonas manganoxydans SI85-9A1]
          Length = 316

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 6/185 (3%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFD 135
           SL+    +   +     +   +  L+  D L+G+ N   F   L +  +    LS++  D
Sbjct: 125 SLIAVVETLRDITSQKEAQTALETLASQDGLTGVANRRMFDQRLAAEWQHPAHLSLLMID 184

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAI 194
           ID+FK  ND  GH  GD+ +  ++D +V         V R GGEEFA     +  Q A  
Sbjct: 185 IDHFKPYNDALGHQRGDECLRRIADLIVSETRQECDLVARYGGEEFAVILPHADMQIALA 244

Query: 195 LANDLRKIIENSQINISS-GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGR 252
           +A  +   ++ + I          +++S G A R  +      +I  AD +LY AK+ GR
Sbjct: 245 VARRILAALKRAAIEHPCPSCPPLVSLSIGAACRSDRSVTPDALIAAADASLYRAKQLGR 304

Query: 253 NRVVC 257
           +R++ 
Sbjct: 305 DRIII 309


>gi|77362085|ref|YP_341659.1| putative GGDEF sensory box protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876996|emb|CAI89213.1| putative GGDEF sensory box protein [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 291

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 80/172 (46%), Gaps = 11/172 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
              + E      ++  ++  D L+GL N S  +  L          N   SI+F DI+ F
Sbjct: 112 AHDITERKKMEEQLYYMAGHDGLTGLPNRSLLMDRLQAAIVKAERENTLFSILFIDINGF 171

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND +GH +GDK++  ++ +L+ V      VGRLGG+EF     G S           
Sbjct: 172 KAINDTYGHLMGDKLLQHIAQRLLSVVREYDTVGRLGGDEFLIVLEGLSSAGDTTAIK-- 229

Query: 200 RKIIENSQINISSGP-SIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
           RKII   Q        S++++ S GIA    H E    +I  ADQA+Y  K+
Sbjct: 230 RKIIGQFQQPFEVDELSLNVSPSIGIANYPTHGETDHQLIKHADQAMYKIKR 281


>gi|75763729|ref|ZP_00743402.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74488784|gb|EAO52327.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 912

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 10/205 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           +L   +++V I I       Y+    +  +    + I+ L+  D ++ + N   F   L 
Sbjct: 445 MLFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELD 504

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     +K  +++ D++ FK IND  GH +GD+V+  ++ +        + + R+G
Sbjct: 505 RSIKRVQKTQDKFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPTIPLARIG 564

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           G+EFA      +EQ+   L   L  I E  +  + +  S ++++S GIA         +T
Sbjct: 565 GDEFAIIVHNQTEQQLLNLCKTLFLITE--EPFVVNQHSFYLSLSIGIAVYPFGGINTTT 622

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++  AD A+Y AK+ G N V  + +
Sbjct: 623 LLQHADIAMYSAKEKGNNAVCMYDE 647


>gi|126173551|ref|YP_001049700.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|125996756|gb|ABN60831.1| diguanylate cyclase [Shewanella baltica OS155]
          Length = 581

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/200 (30%), Positives = 97/200 (48%), Gaps = 11/200 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSL 122
            L+ ++I +  L  +  G +L    +   +  +++R+D L+G+LN  A            
Sbjct: 366 MLMFVTILVGGL--FFLGILLAVGQMQKRKFMRMARMDALTGILNRGAGQELGENLFVQA 423

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
            +      ++ FD+D+FK+IND+FGH  GD  +  + D L           R+GGEEFA 
Sbjct: 424 TARGGDFCVILFDLDFFKRINDSFGHGTGDWALKKVVDSLKSHIRNGDVFARIGGEEFAI 483

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRAD 241
               + E++   +A   R  IE      S G    IT S G++     +  +  + +RAD
Sbjct: 484 LLPYADEEKGMEVAEQCRARIEAIDTQHS-GHKFVITASFGVSGLMADDLSLDPLFHRAD 542

Query: 242 QALYVAKKSGRNRVVCFSDI 261
            ALY AK +GRN VV +SDI
Sbjct: 543 MALYAAKANGRNAVVRYSDI 562


>gi|293609140|ref|ZP_06691443.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829713|gb|EFF88075.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 473

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 111/248 (44%), Gaps = 17/248 (6%)

Query: 22  FSPHTFMIYFSIFFSIFIATVI--FIANIFLFYI--GLTPFYGLEYIL-VENLSLVIISI 76
             P   +I+ +I +   +  +I  F +   ++++       Y  EY     ++ + +I +
Sbjct: 225 LYPIAALIWCAIRYKPIVVALITSFTSAYIIYHVSGHYLLLYPNEYFSNTISIRIGLIMM 284

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------- 129
           TI+ L       +  EL     ++      D L+  L    F+ S+    EK+       
Sbjct: 285 TIAPLTVSSISVLHSELI---QKLQHAIAHDELTSSLTRRQFLQSVRLLQEKVQKENKTS 341

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +    D+D+FKQ+NDN+GH +GD+ +      +  +      +GR GGEEFA     +++
Sbjct: 342 AFFMLDVDHFKQVNDNYGHQIGDRALQTCVTTIQNILHPHDLLGRFGGEEFAIFIADTTK 401

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVA 247
           + A  LA  +R  I    I I     I I +S GI+         I ++   AD ALY A
Sbjct: 402 ESAFELAEQIRIKISQQPIYIYGKLPIFIQVSIGISLYSPSSHRAIESLFKEADDALYQA 461

Query: 248 KKSGRNRV 255
           K+ GRNRV
Sbjct: 462 KRQGRNRV 469


>gi|291571294|dbj|BAI93566.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 556

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 109/266 (40%), Gaps = 33/266 (12%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV 72
           LC +  +    P    I  +I  S    TV  IA   L  +GL    G + I        
Sbjct: 294 LCEQLAILKEQPELLQILQAIVMSNEEITVEPIAAYKLESLGLVKLEGNQAI-------- 345

Query: 73  IISITISLLLGYI----------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
              ++  L   Y             S L EL     ++ +++ ID L+ + N     S L
Sbjct: 346 ---VSCQLYRQYFKYLHEKGIFNQYSRLHELESINQQLEKIANIDDLTQIPNRRFLFSYL 402

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGR 174
               +K       +S++  DID FK  ND +GH  GD+ +  ++  +          V R
Sbjct: 403 EKQWQKHSQRGEVISLILCDIDCFKLYNDTYGHIAGDQCLQKVAKVMESSLHHPTDIVAR 462

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG--PSIHITISAGIAERCHKEP 232
            GGEE A     ++  +A  LA  +RK I+  +I           IT+S G+A    K  
Sbjct: 463 YGGEELAIILPETTSTQALNLAQIIRKNIKLLKIVHEKSLCADKIITLSMGVASIIPKTH 522

Query: 233 IST--IIYRADQALYVAKKSGRNRVV 256
           I+   ++  AD+ALY +K  GR+R+ 
Sbjct: 523 INHFYLMQAADEALYQSKNQGRDRIT 548


>gi|238755051|ref|ZP_04616399.1| Diguanylate cyclase [Yersinia ruckeri ATCC 29473]
 gi|238706755|gb|EEP99124.1| Diguanylate cyclase [Yersinia ruckeri ATCC 29473]
          Length = 372

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 62/216 (28%), Positives = 101/216 (46%), Gaps = 14/216 (6%)

Query: 48  IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107
            +LF +   P    E  + +  S + +      LLG+++    K L  +   + ++S  D
Sbjct: 159 FWLFNLSFQP----ETTISQVYSCLPMIFIYPSLLGWVTFHTAKRLVENKEELLRISVRD 214

Query: 108 CLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
            L+GL N   +   L         Y    S+V  DID FK IND +GH VGD  I  L++
Sbjct: 215 GLTGLYNRRHWEHQLHNQFDSCRRYKHCSSLVLIDIDQFKTINDTYGHTVGDDAITVLAE 274

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
           +L++       VGR GG+EF A    ++ ++A  +   ++  +   +I     P + + I
Sbjct: 275 ELLLGLRAIDIVGRYGGDEFGAILPNTTAEQAREVLTRIQGKLA--EIEFKQSPGLQLKI 332

Query: 221 SAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255
           SAG+AE           +   D ALY AK +GR+R+
Sbjct: 333 SAGVAEFKPEMANYQQWLKAVDSALYHAKNNGRDRI 368


>gi|227819044|ref|YP_002823015.1| hypothetical protein NGR_b08060 [Sinorhizobium fredii NGR234]
 gi|227338043|gb|ACP22262.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
          Length = 1105

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/196 (26%), Positives = 84/196 (42%), Gaps = 12/196 (6%)

Query: 78  ISLLLGYISGS--ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKL 129
           ISL    I+      +E  +++ +I  ++R D ++GL N      +            K 
Sbjct: 624 ISLFFRDITERHKAEQERLLAHRQIHHMARHDAVTGLPNRQFLREAFERLFEGTRARSKT 683

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS- 188
           +++  D+D FK +ND +GHP GD ++  ++++L         V RLGG+EF     G   
Sbjct: 684 AVLSLDLDGFKAVNDAYGHPTGDLLLRSVAERLRRCVEGGDTVARLGGDEFVILRTGVRQ 743

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVA 247
           E+EA  L+  +   +         G    I +  GIA           +I  AD ALY A
Sbjct: 744 EEEAIDLSQRIIDAL--GAPYELDGVQADIGVRVGIAFSPRDGRAADQLIKAADIALYRA 801

Query: 248 KKSGRNRVVCFSDIEN 263
           K  GR   + F    +
Sbjct: 802 KARGRGTYIQFEPGMD 817


>gi|332561061|ref|ZP_08415379.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhodobacter sphaeroides WS8N]
 gi|332274859|gb|EGJ20175.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhodobacter sphaeroides WS8N]
          Length = 878

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 14/219 (6%)

Query: 56  TPFYGLEYILVE-NLSLVIISITISLL-------LGYISGSILKELFISYNRISQLSRID 107
            P + L Y +   +    I+SI  + L          IS + +     S  R+ + +  D
Sbjct: 398 APLHDLRYAIRRPDGQFGILSINAAPLPQAADEARIVISVTDITHAEASAERLRRQAAED 457

Query: 108 CLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
            L+GL N  A   ++ +        ++V  D+D FK +ND   H  GD V+   +D+L  
Sbjct: 458 PLTGLANRRALADAVETRLTEAAPFALVMLDLDNFKAVNDLQRHDTGDAVLRIAADRLRA 517

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           V G    V R+GG+EF   A G+    A  LA  LR  I ++ I +   P +H+  SAGI
Sbjct: 518 VAGADCLVARMGGDEFMVLAPGTDAASAPRLAEALRAAI-SAPIEVGRQP-VHLAASAGI 575

Query: 225 A-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           A    H   ++ ++  AD AL+ AK++GRNR V  S  +
Sbjct: 576 ALHPDHGTSMALLMTGADIALHAAKRAGRNRSVLLSQAQ 614


>gi|313682782|ref|YP_004060520.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM
           16994]
 gi|313155642|gb|ADR34320.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM
           16994]
          Length = 568

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/188 (29%), Positives = 88/188 (46%), Gaps = 12/188 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---L 129
           ++S    + L  IS S+L+ELF+        +  D L+G+LN   F             +
Sbjct: 388 LVSERYIITLNDISQSLLRELFLKNK-----AYHDPLTGVLNRQYFYDYYDENRRNIVTM 442

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            I+  D+DYFK+IND +GH +GD+V+   ++ +         + R GGEEF      +  
Sbjct: 443 GIIMIDLDYFKKINDVYGHSMGDEVLKRSAEAIQNSIRNDDTLIRWGGEEFIVLVNTAKN 502

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            +   ++  +R+ +    I         +T S G       EP  T I RAD+ALY AK 
Sbjct: 503 SQLISVSEHIRRTVSEIVIETIP----PVTASIGATLLLEGEPFKTAIERADKALYDAKA 558

Query: 250 SGRNRVVC 257
           +GRNR+  
Sbjct: 559 NGRNRIEI 566


>gi|257091854|ref|YP_003165495.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257044378|gb|ACV33566.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 597

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 8/179 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           +   + EL    +R S L R D L+G LN      + G            L +   DID 
Sbjct: 419 ADKRISELQAELDRASTLVRHDQLTGALNRRGLEEAFGKETARSRRRQSCLCVALLDIDN 478

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK++ND+ GH  GD  +  L+  +         + R GGEEF      +S ++A      
Sbjct: 479 FKKLNDSLGHDAGDAALIHLATVIRETMRPQDTIARYGGEEFIILLPDTSIEDAQTAIVR 538

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L++ +       ++   + IT SAG+ +   ++   ++  RAD+A+Y AK++G+NRV+ 
Sbjct: 539 LQRELTRRIFLHNNDRQL-ITFSAGVTDFRAEDTQLSVTKRADEAMYAAKQAGKNRVLV 596


>gi|145299108|ref|YP_001141949.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851880|gb|ABO90201.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 338

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 12/210 (5%)

Query: 60  GLEYILVENLSLVIISITI--SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
            L Y L ++  +  ++     +L L  I      EL  +  ++  LS  D L+ + N   
Sbjct: 127 SLPYGLAQDTEVYPVARLCERNLELERIIEIRTHELAEANRQLEILSNTDALTSIGNRRL 186

Query: 118 FISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-P 169
           F   L             L+++  DID+FKQ ND++GH  GD  +  L+  L        
Sbjct: 187 FDHILLQEWNRGLRSGMPLALIMLDIDHFKQFNDHYGHLAGDSCLRALAQALSQSGRRAG 246

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
             V R GGEEF       + Q A   A  L ++I    +  +  P   +T+S G+A    
Sbjct: 247 ELVARYGGEEFVILLPNMNMQAAFATAQHLHRLILTLALPRADSPLGIVTVSFGVASLQP 306

Query: 230 KEPIS--TIIYRADQALYVAKKSGRNRVVC 257
               S   ++ +AD ALY AK +GRN +  
Sbjct: 307 STTQSAIELVQQADAALYHAKLAGRNCIAL 336


>gi|160896640|ref|YP_001562222.1| response regulator receiver modulated diguanylate cyclase [Delftia
           acidovorans SPH-1]
 gi|160362224|gb|ABX33837.1| response regulator receiver modulated diguanylate cyclase [Delftia
           acidovorans SPH-1]
          Length = 316

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 13/188 (6%)

Query: 83  GYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVF 133
             +   +   L I+  R  +  LS  D L+G+ N   F +        L    E LS+V 
Sbjct: 127 AVLKARVRTHLEIAQQRQMLQLLSHSDGLTGVANRRFFSAQLEREFMRLQRLGEPLSLVM 186

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            D+D+FK  ND++GH VGD+ ++ +S  +   +      + R GGEEF      ++   A
Sbjct: 187 MDVDHFKAYNDHYGHLVGDECLSQISQAIQGALHRPGDLLARYGGEEFVCLLPHTALDGA 246

Query: 193 AILANDLRKIIENSQINISSGPSIH-ITISAGIA--ERCHKEPISTIIYRADQALYVAKK 249
            ++A  +   +    +  ++ P    +T+S G+A            ++  AD+ LY+AK 
Sbjct: 247 VLVAQGIVDALRLLDLPHAASPLGQALTVSLGVACIAPSSTNSAQQLLADADRRLYLAKN 306

Query: 250 SGRNRVVC 257
           +GR+R+V 
Sbjct: 307 AGRDRIVW 314


>gi|120610099|ref|YP_969777.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
 gi|120588563|gb|ABM32003.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
          Length = 516

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 8/175 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           + +L    +R S  +R D L+G LN      +L          +  L +   D+D FK I
Sbjct: 342 IAKLQEELDRASAQARHDPLTGSLNRKGLDEALEREVARALRNDAPLCVALLDLDNFKAI 401

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD+ +  L+     V      + R GGEEF      ++  +       L++ 
Sbjct: 402 NDRLGHTGGDEALKHLAGVTREVMRPQDQLARYGGEEFVIILPDTALAQGVEAMARLQRE 461

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  ++  +     + IT SAG+A+   +E     I RADQ +Y+AK+SG+NRV+ 
Sbjct: 462 L-TTRYFLKDQEKVLITFSAGVAQVAPQETTVEAIRRADQGMYLAKRSGKNRVMA 515


>gi|120404597|ref|YP_954426.1| PAS/PAC sensor-containing diguanylate cyclase [Mycobacterium
           vanbaalenii PYR-1]
 gi|119957415|gb|ABM14420.1| diguanylate cyclase with PAS/PAC sensor [Mycobacterium vanbaalenii
           PYR-1]
          Length = 850

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 77/173 (44%), Gaps = 11/173 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--------KLSIVFFDIDYFK 140
            +     +   +  L+  D L+GL N +  ++ +             ++ ++F D+D FK
Sbjct: 666 DITSRKRAEADLQFLALHDPLTGLANRTLLMNRMEQALADEGRHVPGRVGLLFLDLDGFK 725

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
            +ND +GH  GD+V+  ++ ++           RLGG+EFA       E  E   +A  +
Sbjct: 726 PVNDTWGHAAGDEVLKAVARRIENSIRPGDTAARLGGDEFAVLCPVIGENGELHGVAERI 785

Query: 200 RKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           +  +    + +  G S   ++ S G+A          +++ AD+ +Y AK+ G
Sbjct: 786 QTELSR-PLTLIGGQSYDQLSASVGVAMSGCGRTAEELLHHADRLMYHAKRQG 837


>gi|88812491|ref|ZP_01127740.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Nitrococcus mobilis Nb-231]
 gi|88790277|gb|EAR21395.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Nitrococcus mobilis Nb-231]
          Length = 654

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 11/187 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           +  +    + E      R+  L+  D ++GL N + F   L             L + + 
Sbjct: 202 MALLQVHDITEEQQREARLRHLTNFDPVTGLPNRALFTDRLRVAATRCTRGENSLVLGYI 261

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAA 193
           DID FK  N+  GH  GD V+  ++ +L         + RL G+EFA    GS +  E  
Sbjct: 262 DIDRFKDFNETLGHRTGDDVLREIARRLKRHVCDENTLARLNGDEFALLIEGSYTANEIK 321

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGR 252
           ILA  +   +   Q    +G  + +T SAG A   C  +    ++ +A+ A+Y AK  GR
Sbjct: 322 ILARGMLDSLA--QPFFIAGHELFVTASAGFAVYDCVGDEAGDLLRKAEIAMYRAKSQGR 379

Query: 253 NRVVCFS 259
           N    +S
Sbjct: 380 NNFCFYS 386


>gi|317406652|gb|EFV86824.1| hypothetical protein HMPREF0005_04995 [Achromobacter xylosoxidans
           C54]
          Length = 589

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 15/189 (7%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-----------SLGSYNEKLS 130
           L  +   + +E   +  ++   +  D L+GL N    +            +L +    L+
Sbjct: 139 LAILLRDVSREREET-AQLKYQATHDYLTGLPNRRQCMETLSAAIAEAEPALAARGATLA 197

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F D+D FK++ND FGH  GD ++  ++D+L       +F  R+GG+EF      ++E+
Sbjct: 198 VLFLDLDRFKEVNDAFGHAEGDLLLCDVADRLRKFLTPSIFCARVGGDEFLLVLRDTNER 257

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKK 249
            A  LAN +   +  S+ +   G S+ +  S GIA      E   T++  AD A+Y AK 
Sbjct: 258 AAEALANSILNSL--SRPSDVHGRSLSLGASIGIALLNSPGESAETLLNYADAAMYAAKS 315

Query: 250 SGRNRVVCF 258
           +GR +V  +
Sbjct: 316 AGRFQVRAY 324


>gi|297585556|ref|YP_003701336.1| 7TM domain sensor diguanylate cyclase [Bacillus selenitireducens
           MLS10]
 gi|297144013|gb|ADI00771.1| 7TM domain sensor diguanylate cyclase [Bacillus selenitireducens
           MLS10]
          Length = 615

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/181 (33%), Positives = 85/181 (46%), Gaps = 12/181 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
               +EL  +   +  LS +D L+GL N   F   L          N KL +V  DID +
Sbjct: 430 ARRTEELNDTMKHLKTLSELDGLTGLPNRRMFDEDLITVVKETMDENGKLGLVMLDIDNY 489

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPM--FVGRLGGEEFAAAALGSSEQEAAILAN 197
           K  ND +GH  GD  +  ++     V        V R GGEEFA     +SE E   LA 
Sbjct: 490 KNYNDFYGHLQGDDCLKEVATLFKQVIKEEDSAEVYRYGGEEFAVLVKEASEAETYALAE 549

Query: 198 DLRKIIENSQINIS-SGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNR 254
            +RK +E + I    S     +T+SAG+A    ++      ++ +AD ALY AK+SG+N 
Sbjct: 550 QIRKRVEEAAIPHEQSDVQNRLTVSAGVAVLQARDLHSPEKLLEQADAALYQAKRSGKNT 609

Query: 255 V 255
           V
Sbjct: 610 V 610


>gi|144901349|emb|CAM78213.1| GGDEF domain protein [Magnetospirillum gryphiswaldense MSR-1]
          Length = 288

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/191 (31%), Positives = 94/191 (49%), Gaps = 14/191 (7%)

Query: 75  SITISLL-LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYN 126
           ++ +S+L  G  + S+ +E++ +      L+ +D L+GL N  +  + L           
Sbjct: 102 TLMMSVLSFGATAQSLEREVWKA------LATVDPLTGLSNRQSMRTHLMGERDRAIRQK 155

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             LS+   DID+FK+IND FGH  GDKV+  ++  L         V R GGEEF     G
Sbjct: 156 LPLSLALADIDHFKKINDGFGHSQGDKVLRAVAAVLKATVRPYDVVYRYGGEEFLLCLPG 215

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
           ++ +  A++   +R  I   ++    G  I +T + GIAE      +   I  AD+ALY 
Sbjct: 216 TNAENGALVLERIRAAIAALELTDDRGTPIPVTATFGIAEINADLSVDDAIELADRALYD 275

Query: 247 AKKSGRNRVVC 257
            K  GRN+VV 
Sbjct: 276 GKLGGRNKVVI 286


>gi|160874459|ref|YP_001553775.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160859981|gb|ABX48515.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|315266695|gb|ADT93548.1| diguanylate cyclase [Shewanella baltica OS678]
          Length = 581

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/200 (30%), Positives = 97/200 (48%), Gaps = 11/200 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSL 122
            L+ ++I +  L  +  G +L    +   +  +++R+D L+G+LN  A            
Sbjct: 366 MLMFVTILVGGL--FFLGILLAVGQMQKRKFMRMARMDALTGILNRGAGQELGENLFVQA 423

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
            +      ++ FD+D+FK+IND+FGH  GD  +  + D L           R+GGEEFA 
Sbjct: 424 TARGGDFCVILFDLDFFKRINDSFGHGTGDWALKKVVDSLKSHIRNGDVFARIGGEEFAI 483

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRAD 241
               + E++   +A   R  IE      S G    IT S G++     +  +  + +RAD
Sbjct: 484 LLPYADEEKGMEVAEQCRARIEAIDTQHS-GHKYVITASFGVSGLMADDLSLDPLFHRAD 542

Query: 242 QALYVAKKSGRNRVVCFSDI 261
            ALY AK +GRN VV +SDI
Sbjct: 543 MALYAAKANGRNAVVRYSDI 562


>gi|114562278|ref|YP_749791.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114333571|gb|ABI70953.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 576

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 9/175 (5%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNF 146
           ++  N+  + ++ D L+G+ N         +         E  S++  D+D FK IND +
Sbjct: 400 WMQRNQFMKQAQRDGLTGIFNRRTGQEMAENEFIQAQMLGESFSVLLMDLDLFKNINDQY 459

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD V+  ++  +  +        R+GGEEFA      +E  A   A  +R  I N 
Sbjct: 460 GHATGDWVLKKVTHVIGDMLKPTHIFTRMGGEEFAIFMPKQTEDIAVEFAEQIRNAIANI 519

Query: 207 QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
               S G    +T+S G++     +  +  +I RAD ALY AK +GRN V+C++D
Sbjct: 520 NTRFS-GHDFTVTVSCGVSSVDKDDLSLDPLIRRADLALYKAKHNGRNCVICYND 573


>gi|318040733|ref|ZP_07972689.1| diguanylate cyclase [Synechococcus sp. CB0101]
          Length = 311

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/162 (33%), Positives = 79/162 (48%), Gaps = 7/162 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYN--EKLSIVFFDIDYFKQINDNFGHPVGDKV 154
             ++   +  D L+G LN       L S     +L+++  DID+FK IND  GH  GD V
Sbjct: 151 NQQLQTRALSDALTGALNRHWLDQHLESLRLCPELALLMVDIDHFKAINDTHGHSCGDAV 210

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSG 213
           +  ++  L         + RLGGEEF       + Q AA  L   LR+ ++    ++ S 
Sbjct: 211 LRAVATTLRHALRPSDALVRLGGEEFLVICRQEASQAAAEGLGERLRQAVQ----HLQSD 266

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               +TIS G+A R   E     + RAD ALY AK++ RNRV
Sbjct: 267 DLPPVTISIGVALRTPGEGWEAQLERADTALYRAKRNDRNRV 308


>gi|309390292|gb|ADO78172.1| diguanylate cyclase with PAS/PAC sensor [Halanaerobium praevalens
           DSM 2228]
          Length = 445

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 92/205 (44%), Gaps = 13/205 (6%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           I + +L+ VI    ++ L+G  S   +        ++ + +  D L+GL+N   F   L 
Sbjct: 238 IWLTSLTPVIKEQKVTHLVG--SSKDITARKKLELQLEKQANYDNLTGLVNRKLFFEILA 295

Query: 124 SY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                    + K S++F D+D+FK INDN+GH VGD V+  +  +L+        V R+G
Sbjct: 296 ETIKNQQENDNKFSLIFLDLDHFKAINDNYGHDVGDDVLITVGQRLLNAVRQSDTVARMG 355

Query: 177 GEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPIS 234
           G+EF       +++++A  +   + K ++  ++    G    I  S G        + I 
Sbjct: 356 GDEFTIILRNLAAKKDAQKIIEKIHKSLK--EVIKLKGKEYQIGSSIGAVIYPEDGQAIE 413

Query: 235 TIIYRADQALYVAKKSGRNRVVCFS 259
            ++ +AD  +Y  K   +     F 
Sbjct: 414 DLMRKADLTMYEVKNKNKGCFKFFE 438


>gi|255656226|ref|ZP_05401635.1| putative signaling protein [Clostridium difficile QCD-23m63]
          Length = 391

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 114/287 (39%), Gaps = 35/287 (12%)

Query: 5   LKDFLSIWLCHEKNLESF-----SPHTFMIYFSIFFSIFIA--TVIFIANIFLFYIGLTP 57
              F  +W C    L+       S  ++++  +  FS+     +VI     FLF     P
Sbjct: 107 YVTFFCLWGCVITLLDQLGGNDLSVFSYIMLAAAAFSVLKLGESVIVFGGCFLFLNFFLP 166

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELF----------ISYNRISQLSR-- 105
             G++ I     S ++ +  I+ L  ++S  + +               Y  I  ++   
Sbjct: 167 --GIQTIPGNEFSNIVNTFFITSLAVFVSTMLYRSRVFTYYDKLLISQQYEEIYHINNLL 224

Query: 106 -----IDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
                 D L+ + N       L          E ++ +  DIDYFKQ NDN+GH  GD  
Sbjct: 225 NDKVMTDDLTKMNNRRYLEDILQKKLISHANQEPITGMMIDIDYFKQFNDNYGHQKGDYC 284

Query: 155 IAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  ++  ++           R GGEEF        E++A + +  LRKIIE         
Sbjct: 285 LQNIAKVILDFTSSENEHAIRYGGEEFFICIFNCDEEDAKLKSECLRKIIETCNFERDDI 344

Query: 214 PSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCF 258
           P   +T+S G+     +  I  +  I   D+ALY AK+ GRN V  +
Sbjct: 345 PLKCVTVSIGVYTNKIERTITLNEFISNCDKALYTAKEQGRNCVAFY 391


>gi|254489701|ref|ZP_05102897.1| GGDEF domain protein [Methylophaga thiooxidans DMS010]
 gi|224465110|gb|EEF81363.1| GGDEF domain protein [Methylophaga thiooxydans DMS010]
          Length = 344

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 67/203 (33%), Positives = 101/203 (49%), Gaps = 7/203 (3%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +  IL+    L   S  +   L   +  I+K L      + Q +R D L+GLLN  AF  
Sbjct: 142 VSQILLNTQQLTSSSTELKTELMRSTEEIIK-LRDELEAVKQTARTDGLTGLLNRGAFNR 200

Query: 121 SLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
            L +   +    LS+  FDID FK++ND FGH +GDKV+ + +  L           R G
Sbjct: 201 ELQNLCSQGDMVLSLALFDIDNFKRLNDTFGHVLGDKVLQYFATLLNDHRDDIHIAARYG 260

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS--IHITISAGIAERCHKEPIS 234
           GEE A   L S+ +E+ ++A  +R+   +S++           IT+S GI+     +   
Sbjct: 261 GEEMAMIFLHSNLEESFLMAESIRQQFASSRLKKKGSEESIGQITVSVGISALQLGDTPL 320

Query: 235 TIIYRADQALYVAKKSGRNRVVC 257
           T++ RAD+ALY +K  GRNRV  
Sbjct: 321 TLLERADKALYKSKADGRNRVNF 343


>gi|163851936|ref|YP_001639979.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163663541|gb|ABY30908.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 405

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 109/255 (42%), Gaps = 16/255 (6%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           L+IW   ++ L S  P   ++            + F   I       +P++ +       
Sbjct: 136 LTIWQGRDEPLVSRYPALVLLATYAGLYWIRLPLAFTLPIPASVAIASPWFAI------- 188

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
             L       S+ + ++  ++ KE      R++  +  D L+G+ N  A ++    +   
Sbjct: 189 --LCFAGTLFSVAIAFVFMALTKERAEREQRLA--AETDSLTGIANRRALVAGAERHLAV 244

Query: 129 LSIVF--FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
                  FD+D+FK +ND +GH VGD V+A        +       GR+GGEEFA     
Sbjct: 245 APAALLLFDLDHFKAVNDRYGHSVGDAVLAAFCHVADPLLPPGAVFGRMGGEEFACLLPR 304

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALY 245
             E+ A  +A D+R  I   +      P + I +S G+A        +  ++ RAD ALY
Sbjct: 305 LDERAAMRIAEDVRAAIA--RFAHPDYPELVIRVSVGVAAESQIGGSLDYLLRRADDALY 362

Query: 246 VAKKSGRNRVVCFSD 260
            AK +GR++V+   +
Sbjct: 363 QAKDAGRDQVIAAGE 377


>gi|126463806|ref|YP_001044919.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhodobacter sphaeroides ATCC 17029]
 gi|126105617|gb|ABN78147.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 878

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 14/219 (6%)

Query: 56  TPFYGLEYILVE-NLSLVIISITISLL-------LGYISGSILKELFISYNRISQLSRID 107
            P + L Y +   +    I+SI  + L          IS + +     S  R+ + +  D
Sbjct: 398 APLHDLRYAIRRPDGQFGILSINAAPLPQAADDARIVISVTDITHAEASAERLRRQAAED 457

Query: 108 CLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
            L+GL N  A   ++ +        ++V  D+D FK +ND   H  GD V+   +D+L  
Sbjct: 458 PLTGLANRRALADAVETRLTEAAPFALVMLDLDNFKAVNDLQRHDTGDAVLRIAADRLRA 517

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           V G    V R+GG+EF   A G+    A  LA  LR  I ++ I +   P +H+  SAGI
Sbjct: 518 VAGADCLVARMGGDEFMVLAPGTDAASAPRLAEALRAAI-SAPIEVGRQP-VHLAASAGI 575

Query: 225 A-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           A    H   ++ ++  AD AL+ AK++GRNR V  S  +
Sbjct: 576 ALHPDHGTSMALLMTGADIALHAAKRAGRNRSVLLSQAQ 614


>gi|95929780|ref|ZP_01312521.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95134076|gb|EAT15734.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 995

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 12/183 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDY 138
            + L E      ++ QL++ D L+G  N   F   L    ++        + +   D+DY
Sbjct: 540 SADLSEEKAWEEKMLQLAQTDPLTGSANRVLFRDRLQQAIKRAQSRKGMEVQVFSLDLDY 599

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK+IND+ GH  GD+++  ++ +L  V      + RL G+EFA      + E +A  +A 
Sbjct: 600 FKRINDSLGHVAGDRMLIEVAARLKRVSRGQDTISRLSGDEFAILVTCLNDEVDATRMAQ 659

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVV 256
            + + I  S+  +  G  + IT S G+A          T++  AD A++ AK+ GR+R+ 
Sbjct: 660 KMLQAI--SEPMMIDGAELIITASIGVALYPGDGDDDVTLMANADNAMHQAKRQGRSRMC 717

Query: 257 CFS 259
            FS
Sbjct: 718 YFS 720


>gi|300867659|ref|ZP_07112306.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
 gi|300334370|emb|CBN57478.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
          Length = 358

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 120/271 (44%), Gaps = 35/271 (12%)

Query: 12  WLCHEKNL-ESFSPHTFMIYFSIFFSIFIATVIFI-------ANIFLFYIGLTP------ 57
           WL  EK L ++  P +     S  F +  + +IF+         I L++I   P      
Sbjct: 97  WLDKEKRLIDTLPPIS-----SGLFLLTTSMIIFLRPRRLVRLTILLWFIIAAPVVVYLI 151

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS-------QLSRIDCLS 110
           F+  E      + L I+++  ++ +         +L  + N++        ++S  D L+
Sbjct: 152 FHIPELETPRGIDL-IVTLVPAMAINLCFIRFYSQLQDANNKLYLERFHLMEISEKDALT 210

Query: 111 GLLNH----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
            + N           +    E++ I+  DID FKQINDN+GH +GD+V+  ++       
Sbjct: 211 SVFNRGAGERILQDLINQSEEQIGIILCDIDRFKQINDNYGHLMGDRVLQVIAQSCQNRL 270

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                + R GGEEF     G  E+E   +A  LR  I + QI         +T S G+A 
Sbjct: 271 REKDILIRWGGEEFLIVVTGDDEKELKQMAEHLRLAIADRQIPEVG----KVTASFGVAL 326

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R   E I  +  RAD+ALY AK  GRN+V+ 
Sbjct: 327 RQPDEDIVELFARADRALYRAKGYGRNQVIA 357


>gi|294341122|emb|CAZ89523.1| putative Adenylyl and guanylyl cyclase/Phospholipase A2; with PAS,
           EAL and GGDEF domains [Thiomonas sp. 3As]
          Length = 840

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 10/180 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQ 141
             + +   +  ++   +  D L+GL N + F   +          +  +++F D+D FK 
Sbjct: 377 RDVTKAHQAEEKLELAAYRDTLTGLANRTLFEKHVEDAIAVTPPGQSFAVLFIDLDRFKL 436

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           IND  GH VGDKV+   + +LV +        R GG+EF   A  +    +A  +A  ++
Sbjct: 437 INDALGHAVGDKVLVETAQRLVQLARPNNTAARFGGDEFLILARDAHDAAQALRMAMLVQ 496

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +   +    +  ++  T S G+A    H    + ++ RAD A++ +K  GRNRV  FS
Sbjct: 497 QSL--GEPMHHAERTLQTTASIGVAVFPQHGRTTAELLGRADAAMHESKMLGRNRVESFS 554


>gi|260769481|ref|ZP_05878414.1| signal transduction response regulator [Vibrio furnissii CIP
           102972]
 gi|260614819|gb|EEX40005.1| signal transduction response regulator [Vibrio furnissii CIP
           102972]
          Length = 305

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 77/176 (43%), Gaps = 11/176 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
           L    + +  L+ +D L+G+ +   F   L           E L ++  DID+FKQ ND 
Sbjct: 124 LKHQSDLLRSLAYVDGLTGVSSRRHFDQYLDTQLGHAFRKQESLGVLLIDIDFFKQYNDR 183

Query: 146 FGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD  +  ++  L      +   V R GGEEF      + E   A +A  ++  +E
Sbjct: 184 YGHIAGDDALRQVAQNLKQSCLRSTDLVARYGGEEFVMVLPDTDEAGLAHIAQRIKHQLE 243

Query: 205 NSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVC 257
              I  +  P+  +T+SAG A     E       ++  AD  LY AK  GRN+   
Sbjct: 244 QQAIAHTGSPTALLTVSAGGAIYWPGEQPGSTEAMLMLADTMLYKAKAQGRNQSCV 299


>gi|296136946|ref|YP_003644188.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thiomonas intermedia K12]
 gi|295797068|gb|ADG31858.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thiomonas intermedia K12]
          Length = 840

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 10/180 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQ 141
             + +   +  ++   +  D L+GL N + F   +          +  +++F D+D FK 
Sbjct: 377 RDVTKAHQAEEKLELAAYRDTLTGLANRTLFEKHVEDAIAVTPPGQSFAVLFIDLDRFKL 436

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           IND  GH VGDKV+   + +LV +        R GG+EF   A  +    +A  +A  ++
Sbjct: 437 INDALGHAVGDKVLVETAQRLVQLARPNNTAARFGGDEFLILARDAHDAAQALRMAMLVQ 496

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +   +    +  ++  T S G+A    H    + ++ RAD A++ +K  GRNRV  FS
Sbjct: 497 QSL--GEPMHHAERTLQTTASIGVAVFPQHGRTTAELLGRADAAMHESKMLGRNRVESFS 554


>gi|228919483|ref|ZP_04082847.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228840126|gb|EEM85403.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 569

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 88/174 (50%), Gaps = 6/174 (3%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGH 148
            L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  GH
Sbjct: 136 RLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLGH 195

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD +++ ++ +L  V G    + RLGG+EF        + + + LA  +    +    
Sbjct: 196 MIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQA--P 253

Query: 209 NISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 254 FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 307


>gi|242280344|ref|YP_002992473.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
 gi|242123238|gb|ACS80934.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
          Length = 482

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 95/194 (48%), Gaps = 13/194 (6%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------ 125
           +I+    +L +  +S  ++    +   R+ Q +  D L+GL N  +F     S       
Sbjct: 291 IIVGGIATLFIVVLSILVINHFQL---RLEQQADSDELTGLGNRRSFERFFESAVSGIKK 347

Query: 126 -NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
            +   SI+  D+D FK++ND  GH  GD+++  +S  +        F  R GG+EF    
Sbjct: 348 KSGPFSIILLDVDGFKEVNDKCGHMEGDRILKKISSIIRSCIRDSDFCARWGGDEF-LLL 406

Query: 185 LGSSEQEAAILANDLRKIIENS--QINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
           +      A  +A  +R  + ++  +  +SS     +T+S G+A+    + + ++I RAD+
Sbjct: 407 VDGEVDLAFDIAERIRTAVADACNEDLVSSDCGEIVTVSCGVAQYTDADTLDSLIVRADK 466

Query: 243 ALYVAKKSGRNRVV 256
           A+Y +K  G+++V+
Sbjct: 467 AMYESKAQGKDKVI 480


>gi|160876271|ref|YP_001555587.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160861793|gb|ABX50327.1| diguanylate cyclase [Shewanella baltica OS195]
          Length = 579

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 109/244 (44%), Gaps = 26/244 (10%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGL-----EYILVENLSLVIIS---------ITISLL 81
           + FI  +     ++ F+I LT ++ +     + ++    ++  I+         +T +L 
Sbjct: 325 TAFIILIFCSGILYCFFIWLTSWHFITKGIIKPVMATRDAMNAIANEKLDTHMPVTDNLE 384

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFF 134
           L  +  S+   L     ++  ++  D L+G  N                 +N  L I+ F
Sbjct: 385 LQQMVNSLET-LKSYAAQVKGMAETDGLTGCYNRRYLDIQLQKELEYARDHNMPLGIILF 443

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           DID FKQ ND +GH  GD+ +  + +    +       + R GGEEF      S  +E  
Sbjct: 444 DIDNFKQFNDRYGHVAGDQCLKNIVNAAKSILKRPTDMLARYGGEEFMIVLPSSHLEEVY 503

Query: 194 ILANDLRKIIENSQINISSGPSIHI-TISAGIA--ERCHKEPISTIIYRADQALYVAKKS 250
             A  LR+ I + +I     P   I TISAGI   +   +   +++I RAD+ALY AK +
Sbjct: 504 QFAERLREKIISLEIPHEDSPHAGILTISAGITCWQLPQQLDANSLINRADEALYHAKLT 563

Query: 251 GRNR 254
           GRNR
Sbjct: 564 GRNR 567


>gi|119493194|ref|ZP_01624069.1| hypothetical protein L8106_15744 [Lyngbya sp. PCC 8106]
 gi|119452759|gb|EAW33936.1| hypothetical protein L8106_15744 [Lyngbya sp. PCC 8106]
          Length = 990

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 83/191 (43%), Gaps = 12/191 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFD 135
            +S   + E   +  ++   +  D L+ L N + F+  L               ++VF D
Sbjct: 537 LVSLRDITERKQAEEQLRHSAFYDALTNLPNRALFMDQLEQAITQTKTLNQTSFAVVFLD 596

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAI 194
           +D FK +N++ GH +GD+++  ++D+L     +   + RLGG+EF        +  +A  
Sbjct: 597 LDSFKFVNESLGHIIGDQLLIAIADRLETCLRSGDILARLGGDEFTFLLKDIEQVSQAIT 656

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253
           +  +++  +     ++SS        S GIA           ++  AD A+Y AK+ G+N
Sbjct: 657 VVQNIQHKL-TFPFDLSSHQLFS-NASLGIALISPDYTYPEEVLRDADIAMYSAKQRGKN 714

Query: 254 RVVCFSDIENN 264
               F+     
Sbjct: 715 CYAIFNSQMRK 725


>gi|254560002|ref|YP_003067097.1| diguanylate cyclase [Methylobacterium extorquens DM4]
 gi|254267280|emb|CAX23112.1| putative diguanylate cyclase; two GGDEF domains [Methylobacterium
           extorquens DM4]
          Length = 363

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 64/215 (29%), Positives = 103/215 (47%), Gaps = 5/215 (2%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102
             +A   +  + L P      + +  +++ I+    S+LL   +  +  E   +Y  +++
Sbjct: 153 ALLAIALVICLPLLPVSEAS-VRLSVIAIFIVDHVTSILLT--TAILALEAERAYAAVAR 209

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           ++R D L+G LN     +  G   E   I+  D+D+FK IND FGH  GD V+   + + 
Sbjct: 210 MARTDALTGALNRQGLAAETGGVTE-AGIIVADLDHFKAINDRFGHAAGDAVLRDFAARA 268

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             +      + RLGGEEF     G        LA  LR+ +  + +    G ++ IT+S 
Sbjct: 269 AALLPEGGHLARLGGEEFGIVLPGHDHNATTYLAERLRRAVGGAPVPWK-GSAVPITVSL 327

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           G+A     E +S  + RAD+ALY AK  GRNRV  
Sbjct: 328 GVAMLRTGEALSESLERADKALYDAKTDGRNRVRV 362


>gi|225847975|ref|YP_002728138.1| ggdef domain protein [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644558|gb|ACN99608.1| ggdef domain protein [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 409

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 8/158 (5%)

Query: 107 DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+G+     F   L  + E        +SI+  DID+FK+IND +GH  GD+ +    
Sbjct: 253 DPLTGVSTRRGFNVILQKHFEISELTRLPISIIIADIDFFKKINDTYGHLAGDEALKHFV 312

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +        ++ R GGEEF      ++ +EA ++A  +R+ +E + + I +G  I IT
Sbjct: 313 KIIKQNLRKSDYIFRFGGEEFIILLPNTTLEEAIVIAEKIRETLEKTPL-IYNGKEIKIT 371

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            S G+ E    EP+  II   D+ LY AK+SGRN+V+ 
Sbjct: 372 ASFGVKEVHPGEPVDRIIEDVDKKLYKAKESGRNKVIY 409


>gi|298488007|ref|ZP_07006044.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157286|gb|EFH98369.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 821

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 19/193 (9%)

Query: 83  GYISGSIL------KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKL 129
           G +SG++L      +E       +S  +  D L+GL+N S F   L              
Sbjct: 348 GVVSGAVLVLHDMTQEQRQYIADLSWQAAHDPLTGLVNRSEFEHRLQRVLDGIDDQASSH 407

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            ++F D+D FK +ND  GH  GD+++  L   L         + RLGG+EF    +    
Sbjct: 408 CLMFLDLDQFKLVNDTGGHAAGDELLRQLCRALPQGLRDGDTLARLGGDEFGVLLVDCPA 467

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI---IYRADQALYV 246
             A  +A  LR+I++     +  G     T+S G+ +    +  +T+   +  AD A Y+
Sbjct: 468 DTALDIAEGLREIVQTLHF-MWKGRPFMTTVSIGLVQL--GDTPATLEGSLSAADMACYM 524

Query: 247 AKKSGRNRVVCFS 259
           AK+ GRNRV  +S
Sbjct: 525 AKERGRNRVQVYS 537


>gi|218230897|ref|YP_002365424.1| sensory box/GGDEF family protein [Bacillus cereus B4264]
 gi|218158854|gb|ACK58846.1| sensory box/GGDEF family protein [Bacillus cereus B4264]
          Length = 567

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 88/174 (50%), Gaps = 6/174 (3%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGH 148
            L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  GH
Sbjct: 134 RLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLGH 193

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD +++ ++ +L  V G    + RLGG+EF        + + + LA  +    +    
Sbjct: 194 MIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQA--P 251

Query: 209 NISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 252 FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 305


>gi|152999836|ref|YP_001365517.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|151364454|gb|ABS07454.1| diguanylate cyclase [Shewanella baltica OS185]
          Length = 581

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/200 (30%), Positives = 97/200 (48%), Gaps = 11/200 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSL 122
            L+ ++I +  L  +  G +L    +   +  +++R+D L+G+LN  A            
Sbjct: 366 MLMFVTILVGGL--FFLGILLAVGQMQKRKFMRMARMDALTGILNRGAGQELGENLFVQA 423

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
            +      ++ FD+D+FK+IND+FGH  GD  +  + D L           R+GGEEFA 
Sbjct: 424 TARGGDFCVILFDLDFFKRINDSFGHGTGDWALKKVVDSLKSHIRNGDVFARIGGEEFAI 483

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRAD 241
               + E++   +A   R  IE      S G    IT S G++     +  +  + +RAD
Sbjct: 484 LLPYADEEKGMEVAEQCRARIEAIDTQHS-GHKFVITASFGVSGLMADDLSLDPLFHRAD 542

Query: 242 QALYVAKKSGRNRVVCFSDI 261
            ALY AK +GRN VV +SDI
Sbjct: 543 MALYAAKANGRNAVVRYSDI 562


>gi|119487305|ref|ZP_01621056.1| Serine/Threonine protein kinase and Signal Transduction Histidine
            Kinase [Lyngbya sp. PCC 8106]
 gi|119455860|gb|EAW36995.1| Serine/Threonine protein kinase and Signal Transduction Histidine
            Kinase [Lyngbya sp. PCC 8106]
          Length = 2038

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 13/191 (6%)

Query: 85   ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDI 136
            I    +        ++   ++ D L+GL N       L           N + +++F DI
Sbjct: 1591 IFFRDITGRKQMEEKLISDAQHDALTGLPNRLLLSEHLQQMIQRTQEEQNYRYAVLFLDI 1650

Query: 137  DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
            D FK IN++ GH VGD+++  ++ +L         + RLGG+EF        ++     A
Sbjct: 1651 DRFKVINESLGHLVGDQLLIAIAQRLKGCITQQDIIARLGGDEFIILLDNPEDE--VRTA 1708

Query: 197  NDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255
              ++  + N+  N+ +G  +  T+S GI            ++  AD A+Y AK  GR R 
Sbjct: 1709 ARIQMAL-NAPFNL-NGYKVFNTVSIGIVSSNTTYTRPEELLQSADIAMYQAKAEGRARY 1766

Query: 256  VCFSDIENNTC 266
            V F        
Sbjct: 1767 VIFDTTMQERA 1777


>gi|91200104|emb|CAJ73147.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 286

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 109/241 (45%), Gaps = 22/241 (9%)

Query: 33  IFFSIFIATVIFIANIFL---FYIGLTPFYGLEYILVENLS--------LVIISITISLL 81
           I FSIF    + +A  F    + + ++ F  + + L +  S        + + +  + L 
Sbjct: 38  ISFSIFYLLPVLMATWFAKRRYGVVISVFSAITWYLADINSGHAYSHYIIPVWNSIMRLG 97

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFF 134
              I  S + ++    N+   ++R D L+G+ N   F       I  +  +   LS+ + 
Sbjct: 98  FFLIVTSSIDKVRNLLNKEKSMARNDFLTGVANRRFFYEIATKEIERIARFIHPLSLAYI 157

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID FKQ+ND  GH  GDK++  ++  +     +   V RLGG+EFA     ++ Q A  
Sbjct: 158 DIDNFKQVNDTLGHSAGDKLLQVVAGTIKENIRSIDTVSRLGGDEFALLMPETNAQSAIT 217

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             N LR  +    +++    +  +T S G+        ++ +I  AD  +Y  K SG+NR
Sbjct: 218 ALNKLRHAL----LDMVHENNWPVTFSIGLVTCSESCKLNELIKEADNLMYTIKASGKNR 273

Query: 255 V 255
           +
Sbjct: 274 I 274


>gi|114048339|ref|YP_738889.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113889781|gb|ABI43832.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 575

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 103/219 (47%), Gaps = 15/219 (6%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLS 110
            YI        EY  +     +++     L +  + G++ K  F+      +++R+D L+
Sbjct: 347 LYIAQQTVKEREYTNMLMFITILVGGLFFLAILLVVGNLQKRRFM------RMARMDALT 400

Query: 111 GLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           G+LN  A             +      ++ FD+D+FK+IND++GH  GD  +  + + L 
Sbjct: 401 GVLNRGAGQDLGENLFVQAAARGGNFCVILFDLDHFKRINDSYGHGTGDWALKKVVEALK 460

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                     R+GGEEFA     ++E +   +A   R  IE    ++S G    IT S G
Sbjct: 461 SHVRNGDVFARIGGEEFALFLPYANESKGMEVAEQCRSRIEAIDTHLS-GHKFTITASFG 519

Query: 224 IAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           ++    ++  +  +++RAD ALY AK +GRN V C+ D 
Sbjct: 520 VSGMTKEDLSLDPLLHRADMALYAAKSNGRNSVFCYEDA 558


>gi|332297417|ref|YP_004439339.1| diguanylate cyclase [Treponema brennaborense DSM 12168]
 gi|332180520|gb|AEE16208.1| diguanylate cyclase [Treponema brennaborense DSM 12168]
          Length = 282

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 12/167 (7%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
            +  +L+ +D L+G  N      +L         Y ++ S++  DID FK++ND +GH V
Sbjct: 113 RKTEELAMLDGLTGAFNRRYMDVALKKELNRSTRYGKQFSLIILDIDDFKRLNDTYGHEV 172

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD V+   SD             R GGEEF      +    A +LA  +R  +E++ I+ 
Sbjct: 173 GDIVLQEFSDAARSAIREEDVFCRYGGEEFLVILPETDTSGAYVLAERIRHQLESAAIH- 231

Query: 211 SSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               +  IT SAG +    + +  + ++ R D+ALY AK +G+N+ V
Sbjct: 232 ---ETYGITFSAGTVTYPDYADNSADLLRRVDRALYQAKFNGKNQTV 275


>gi|326938344|gb|AEA14240.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 567

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 88/174 (50%), Gaps = 6/174 (3%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGH 148
            L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  GH
Sbjct: 134 RLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLGH 193

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD +++ ++ +L  V G    + RLGG+EF        + + + LA  +    +    
Sbjct: 194 MIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQA--P 251

Query: 209 NISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 252 FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 305


>gi|149203747|ref|ZP_01880716.1| diguanylate cyclase [Roseovarius sp. TM1035]
 gi|149142864|gb|EDM30906.1| diguanylate cyclase [Roseovarius sp. TM1035]
          Length = 479

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 13/167 (7%)

Query: 104 SRIDCLSGLLNHSA---FISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           + +D L+G  N      F+  L        E  +++  D+D+FKQ+ND  GH  GD+V+ 
Sbjct: 307 AMLDPLTGAHNRRFALPFLQQLIETSQLSGESFAVMLADLDFFKQVNDRHGHAAGDRVLC 366

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PS 215
            ++  L         + R+GGEEF      +S + A   A+ L  +I  + I ++SG   
Sbjct: 367 EVTHHLRAHLREGDMLARIGGEEFLIVTPATSRRRAQRTADRLCAMIAQTPIPLASGLAP 426

Query: 216 IHITISAGI-----AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +H+TIS G+     A       +  ++  AD+ALY AK  GRN V  
Sbjct: 427 LHVTISIGVTMATPAPSRPAASVGQLLEEADRALYAAKAQGRNMVTF 473


>gi|134296540|ref|YP_001120275.1| diguanylate cyclase/phosphodiesterase [Burkholderia vietnamiensis
           G4]
 gi|134139697|gb|ABO55440.1| diguanylate cyclase/phosphodiesterase [Burkholderia vietnamiensis
           G4]
          Length = 790

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 101/208 (48%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVIIS-ITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +Y    N+ L++ S IT+++L  + ++  ++ +L      ++QL+  D L+GL N  A +
Sbjct: 302 DYYHTRNVYLLMTSFITLAMLAFFGVATGLIGKLLGREREMTQLAEYDLLTGLANRYATL 361

Query: 120 SSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
             L       +   +L ++F D+D FK +ND  GH  GD V+   + +L    G    + 
Sbjct: 362 RGLRNDVSMPASLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLRMTASRLSDAVGDEGSLA 421

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EF     G   E+ A  LA  + ++    +     G S  +  S GIA      E
Sbjct: 422 RIGGDEFVVVMKGDDIERRAVRLAESVIRMFA--EPFDVRGSSFVLHASIGIALHTVANE 479

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +AD A+Y AK +G+N    ++
Sbjct: 480 SEIDLLKKADLAMYSAKDAGKNCYQFYA 507


>gi|15640678|ref|NP_230307.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121587864|ref|ZP_01677621.1| GGDEF domain protein [Vibrio cholerae 2740-80]
 gi|121728403|ref|ZP_01681431.1| GGDEF domain protein [Vibrio cholerae V52]
 gi|147673612|ref|YP_001216152.1| GGDEF domain-containing protein [Vibrio cholerae O395]
 gi|153818689|ref|ZP_01971356.1| GGDEF domain protein [Vibrio cholerae NCTC 8457]
 gi|153822544|ref|ZP_01975211.1| GGDEF domain protein [Vibrio cholerae B33]
 gi|227080839|ref|YP_002809390.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           M66-2]
 gi|229505720|ref|ZP_04395230.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae BX
           330286]
 gi|229509247|ref|ZP_04398732.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae B33]
 gi|229519545|ref|ZP_04408988.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae RC9]
 gi|229608831|ref|YP_002879479.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           MJ-1236]
 gi|254850892|ref|ZP_05240242.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255744125|ref|ZP_05418078.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholera CIRS
           101]
 gi|262156101|ref|ZP_06029220.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae INDRE
           91/1]
 gi|262169957|ref|ZP_06037647.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae RC27]
 gi|298500774|ref|ZP_07010577.1| GGDEF domain-containing protein [Vibrio cholerae MAK 757]
 gi|9655095|gb|AAF93824.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121547900|gb|EAX57984.1| GGDEF domain protein [Vibrio cholerae 2740-80]
 gi|121629337|gb|EAX61769.1| GGDEF domain protein [Vibrio cholerae V52]
 gi|126510769|gb|EAZ73363.1| GGDEF domain protein [Vibrio cholerae NCTC 8457]
 gi|126519962|gb|EAZ77185.1| GGDEF domain protein [Vibrio cholerae B33]
 gi|146315495|gb|ABQ20034.1| GGDEF domain protein [Vibrio cholerae O395]
 gi|227008727|gb|ACP04939.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           M66-2]
 gi|227012483|gb|ACP08693.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae O395]
 gi|229344234|gb|EEO09209.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae RC9]
 gi|229353819|gb|EEO18755.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae B33]
 gi|229357943|gb|EEO22860.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae BX
           330286]
 gi|229371486|gb|ACQ61909.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           MJ-1236]
 gi|254846597|gb|EET25011.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255738065|gb|EET93457.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholera CIRS
           101]
 gi|262021691|gb|EEY40402.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae RC27]
 gi|262030137|gb|EEY48782.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae INDRE
           91/1]
 gi|297540555|gb|EFH76613.1| GGDEF domain-containing protein [Vibrio cholerae MAK 757]
          Length = 685

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 10/190 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           L     S+ K   ++ ++++QL+  D L+GL N S  +  L        + +    + + 
Sbjct: 220 LASTFQSMWKGKELAESKLNQLAYYDSLTGLANRSLLLQKLSDAIETAQNSHSTGVLFYL 279

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND+ GH +GD++I  ++ ++           R+GG+EFA      S  +A  
Sbjct: 280 DLDRFKTINDSLGHTIGDQLIKAVALRMEAWTKNDYLSARIGGDEFAVLIPYLSPAKAEE 339

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRN 253
           +A  L  +I N           + T+S GI+        +  ++ +AD ALY AK SGRN
Sbjct: 340 VAKQLLTLISN--PYAVDDHQFYCTVSIGISVFPSVGSCNIDVLRQADTALYRAKASGRN 397

Query: 254 RVVCFSDIEN 263
           + + +     
Sbjct: 398 KFMFYEPEMQ 407


>gi|297539309|ref|YP_003675078.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera sp. 301]
 gi|297258656|gb|ADI30501.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera sp. 301]
          Length = 879

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 98/210 (46%), Gaps = 13/210 (6%)

Query: 69  LSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           LS+ ++     ++  Y+ S   + E   + ++I  ++  D L+ L N   F   L     
Sbjct: 413 LSISVVKSKDGVVTHYVGSHVDITERKAAADKILHIAFHDLLTQLPNRQLFNDRLKQAIA 472

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                ++  +++  D+D FK +ND  GH +GD ++  ++++L +       V RLGG+EF
Sbjct: 473 SSARTSQIGALLLIDLDNFKTLNDTLGHDIGDLLLQQVAERLNLNVREGDTVARLGGDEF 532

Query: 181 AAAALGSSEQ--EAAILANDL--RKIIENSQINISSGPSIHITISAGIAER-CHKEPIST 235
                  S+   +AA  A  L  + ++  +Q  +      H T S G+     H+  I+ 
Sbjct: 533 VILLEDLSDNALDAATSAEVLGDKILVALNQPYVLGSNHYHTTSSIGVTMFEGHQLMIAD 592

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           ++ +AD ++Y AKK+GRN +  F       
Sbjct: 593 LLKQADISMYQAKKAGRNTLRFFDPKMQEA 622


>gi|149189662|ref|ZP_01867944.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Vibrio shilonii AK1]
 gi|148836474|gb|EDL53429.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Vibrio shilonii AK1]
          Length = 947

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/194 (27%), Positives = 94/194 (48%), Gaps = 15/194 (7%)

Query: 69  LSLVIISITIS--LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------ 120
           LS+++I    +   +L     S  KEL  S +++ + +  D L+ L N   FI       
Sbjct: 477 LSVLLIMTVFNNHKVLLRRVKSRTKELEASRDQLKRYAFNDALTNLPNRRMFIEQTNHAL 536

Query: 121 SLGSYNEKLS-IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
            L   N  ++ ++F D++ FK +ND+ GH  GDK++  +S +L     +   + R GG+E
Sbjct: 537 RLAERNRSIAAVLFLDLNRFKHVNDSLGHDFGDKLLVEVSKRLSGCLRSSDVLARFGGDE 596

Query: 180 FAAAALG-SSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTI 236
           F       ++ ++A  L+  +   I   +  I  G  S+ I+ S GIA      + +  +
Sbjct: 597 FTILIENLTNIEQAIALSKKI---INGLRKPIQIGRESLTISTSIGIAAYPKDGQNVDDL 653

Query: 237 IYRADQALYVAKKS 250
           +  AD A+Y AK+S
Sbjct: 654 LRAADTAMYKAKES 667


>gi|77918616|ref|YP_356431.1| putative response regulator [Pelobacter carbinolicus DSM 2380]
 gi|77544699|gb|ABA88261.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pelobacter carbinolicus DSM
           2380]
          Length = 628

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 59/235 (25%), Positives = 102/235 (43%), Gaps = 32/235 (13%)

Query: 58  FYGLEYILVENLSLVII--SITISLLLGYISGSILK-ELFISYN-RISQLSRIDCLSGLL 113
           +  +++ L +  SLVI+     I+ +L        K EL      R+ +L+  D L+GL 
Sbjct: 125 WDEIQHKLGDTDSLVILKKPFDIAEVLQLAHTMTRKWELNRQIQGRLHRLAYFDNLTGLP 184

Query: 114 NHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N + F+ SL           ++ +++F D++ FK+IND  GH +GDK++  ++ +L    
Sbjct: 185 NRTQFLESLNKTLAIAQRKQKQAALLFIDLNDFKRINDTLGHSMGDKLLEIVAKRLAGCI 244

Query: 167 GTPMFV---------GRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSI 216
                +          RLGG+EF        SEQ  A +A  +   +  ++        +
Sbjct: 245 RESDLLGSTCEGSKTARLGGDEFTVLLPEVESEQFVATVAKRIFHCL--TRPADLDKHQV 302

Query: 217 HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR----VVCFSDIENNTC 266
            +T S GIA      +   T++  AD A+Y AK    NR       + +  N   
Sbjct: 303 MVTPSIGIALFPNDGKDAETLMKCADMAMYFAK----NREPENYRFYQESMNTEA 353


>gi|312111165|ref|YP_003989481.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Geobacillus sp. Y4.1MC1]
 gi|311216266|gb|ADP74870.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Geobacillus sp. Y4.1MC1]
          Length = 614

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/268 (27%), Positives = 123/268 (45%), Gaps = 23/268 (8%)

Query: 16  EKNLESFSPH--TFMIYFSIFFSIFIATVIFIANIF--LFYIGLTPFYGLEYILVENLSL 71
           E N ++  P+  + ++YFS+   +     +F   IF   F +G+     + Y +   LSL
Sbjct: 131 EINTQNLLPYMISLVVYFSLNICLMFLFFVFFDRIFKGTFDLGVLLESAIGYSVTLLLSL 190

Query: 72  VI---------ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           V+           + +  +L  I  ++ ++    Y  +S+ +  D L+GL NH  F   L
Sbjct: 191 VLAILLNEKRYFGLFLFTVLVAILSAVFRKFLYLYQEVSERANKDHLTGLYNHGYFKEML 250

Query: 123 GSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GR 174
                      +  ++   D+D FK+ ND  GH  GDK++ F  + L        FV  R
Sbjct: 251 NEQFRDAKKLKQPFTLALLDLDDFKKYNDRNGHLQGDKLLQFFGELLKKAVNGTDFVAAR 310

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKE-P 232
            GGEEFA    G++++EA    + LRK I ++  +         ++ S GIAE       
Sbjct: 311 YGGEEFAILMPGTTKEEAFSFLDRLRKEINDTYFSGVEHVPYRCLSFSCGIAEMERSMYD 370

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSD 260
              +I++ADQALY AK  G+N V  + +
Sbjct: 371 SGELIHKADQALYYAKAQGKNNVQIYEE 398


>gi|30018813|ref|NP_830444.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 14579]
 gi|296501388|ref|YP_003663088.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
 gi|29894355|gb|AAP07645.1| Sensory box/GGDEF family protein [Bacillus cereus ATCC 14579]
 gi|296322440|gb|ADH05368.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
          Length = 567

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 88/174 (50%), Gaps = 6/174 (3%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGH 148
            L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  GH
Sbjct: 134 RLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLGH 193

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD +++ ++ +L  V G    + RLGG+EF        + + + LA  +    +    
Sbjct: 194 MIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQA--P 251

Query: 209 NISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 252 FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 305


>gi|299132359|ref|ZP_07025554.1| diguanylate cyclase/phosphodiesterase [Afipia sp. 1NLS2]
 gi|298592496|gb|EFI52696.1| diguanylate cyclase/phosphodiesterase [Afipia sp. 1NLS2]
          Length = 492

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 86/188 (45%), Gaps = 10/188 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDY 138
           I+   + E   +  ++S ++  D L+GL N +A    +        + E+ +I+F D+D 
Sbjct: 53  ITHDDITEQRKAEAKLSHMAMHDALTGLFNRAAIREQIESCFRNLRHGERFAILFLDLDR 112

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILAN 197
           F+ +ND  GH  GD+++  + D+L         V RLG +EF      +      + LA+
Sbjct: 113 FRSVNDTLGHEYGDELLRQVGDRLRGRLQKGDTVARLGDDEFVVLQCEADNPTNPSKLAS 172

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            L   I ++   +    +I +  S GIA      +    ++ +A+ AL+ AK+ G N   
Sbjct: 173 KLVDCI-SAPFELGDHQAI-VGASVGIAMASTDADGTDELLKKANIALHRAKEDGGNTCR 230

Query: 257 CFSDIENN 264
            F    ++
Sbjct: 231 FFEAEMDD 238


>gi|312198840|ref|YP_004018901.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EuI1c]
 gi|311230176|gb|ADP83031.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EuI1c]
          Length = 997

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 13/183 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
            +L  L  ++ R+   +  D L+ L N + F S L           + + ++F D+D FK
Sbjct: 368 RLLATLQSTHERLRYQAFHDALTNLPNRALFTSELERAIENHRAERQAVIVLFCDLDDFK 427

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
            IND  GH  GD ++  ++ +L           RLGG+EFA      +   EA I     
Sbjct: 428 SINDTLGHAAGDDLLRAVAGRLRGAVRDEDLAARLGGDEFAILLTDLAGAGEARITGEHT 487

Query: 200 -RKIIENS-QINISSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNR 254
            R+I+    Q     G   ++ +S G+A        +    +++RAD A+Y AK S +  
Sbjct: 488 GRRILAVMRQPFTVRGSRRYVRVSIGLAIADVQEPVDDAEQLLHRADTAMYTAKHSHKGG 547

Query: 255 VVC 257
           +V 
Sbjct: 548 LVL 550


>gi|227112381|ref|ZP_03826037.1| hypothetical protein PcarbP_05422 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 610

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 91/206 (44%), Gaps = 15/206 (7%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G +  ++E L+ ++ ++ I +     + S+  E       +   +  D L+GL N S+F 
Sbjct: 409 GYDQTMIELLAPLVKTLGIIIH----ARSLEDERTQIEASLRFNAGHDFLTGLPNRSSFF 464

Query: 120 SSLG---------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
                           EK  +   DID FK IND +GH  GD V+  L+  + +      
Sbjct: 465 EQANTFFQHKQQSHQAEKSCLAIIDIDLFKNINDQYGHLAGDAVLKELAMLMRMSLRQED 524

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            V R+GGEEF       S Q A +    +R+ IE   +      ++  TISAGIA     
Sbjct: 525 LVARIGGEEFIILLKDVSYQTAVVTIERIRQAIEQHTLEY-DRQNLRFTISAGIAAYRTD 583

Query: 231 -EPISTIIYRADQALYVAKKSGRNRV 255
              +   I  AD+ LY AK+ GRN V
Sbjct: 584 LASVEDWIQLADENLYAAKRQGRNCV 609


>gi|54301909|ref|YP_131902.1| hypothetical protein PBPRB0229 [Photobacterium profundum SS9]
 gi|46915329|emb|CAG22102.1| hypothetical ScrC (sensory box/GGDEF familyprotein) (involved in
           swarmer cell regulation) [Photobacterium profundum SS9]
          Length = 782

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 98/243 (40%), Gaps = 23/243 (9%)

Query: 43  IFIANIF---LFYIGLTPFYGLEYILVENLSLVIISITIS------LLLGYISGSILKE- 92
           IF +  F   L ++     +GL YI   N + +I+             L   +  + +E 
Sbjct: 277 IFTSGWFIAGLSFLAFPVIFGLLYIFKINSANIILRTKFEESNKQHRALSEKNVRLTEEI 336

Query: 93  --LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
               IS  +++  +  D L+GL N       L          N  + +++ D+D FKQIN
Sbjct: 337 DKRKISEEKLAYQASHDALTGLPNRKYGNERLEQELFRAKRNNTNVLVMYIDLDNFKQIN 396

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKI 202
           D  GH  GD+ +   + +L+        + RLGG+EF          + A +LA  +  +
Sbjct: 397 DTLGHLAGDQFLKLSTSRLLGSVRHSDTLARLGGDEFLLVIPDLKDLKSAKLLATTIVSL 456

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              ++          ++ S G++      +    ++  AD A+Y  K+ GRN    ++  
Sbjct: 457 F--NKPFFWQKQEFFVSTSIGLSVFPQDGDNAQQLLASADTAMYRVKQDGRNAFSFYNTD 514

Query: 262 ENN 264
            N 
Sbjct: 515 MNR 517


>gi|83748362|ref|ZP_00945386.1| Hypothetical Protein RRSL_01709 [Ralstonia solanacearum UW551]
 gi|83724984|gb|EAP72138.1| Hypothetical Protein RRSL_01709 [Ralstonia solanacearum UW551]
          Length = 1234

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 22/187 (11%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQ 141
            + E  ++  R++Q + +D L+GL N +                  +  +   +ID FK 
Sbjct: 793 DVTEQEMTRARLAQHATVDPLTGLPNRTLLADRVQQAVEMAARQRSRFYVALINIDRFKV 852

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA----AILAN 197
           +ND+ GH +GD+V+  ++++L     T   V R GG+ FA     +          + A 
Sbjct: 853 VNDSLGHLLGDEVLRRIAERLRDAADTVDTVARFGGDVFALVISHAGSHGVDLGFDLFAE 912

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +R            G  + +T S G+AE   H     T++  A+ A+Y AK++GRNR+ 
Sbjct: 913 PIR----------VEGHEVFVTASIGVAEYPAHGTDSETLVRHAEMAMYYAKQNGRNRLE 962

Query: 257 CFSDIEN 263
            F+   +
Sbjct: 963 FFAPEMD 969


>gi|291086281|ref|ZP_06571446.1| response regulator [Citrobacter youngae ATCC 29220]
 gi|291068734|gb|EFE06843.1| response regulator [Citrobacter youngae ATCC 29220]
          Length = 558

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 65/179 (36%), Positives = 93/179 (51%), Gaps = 11/179 (6%)

Query: 89  ILKELFISYNRISQL-SRI--DCLSGLLNH----SAFISSLGSYN---EKLSIVFFDIDY 138
           +++ + I   R+  L +R+  D LSGL NH        S++   N       +V  D+D 
Sbjct: 379 LIRAVTIRAERMRVLRARMSQDSLSGLYNHSTTTHYLKSAIAESNYSGNPFCMVMVDLDR 438

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND +GH VGD+VI  +S        +   VGR GGEEF     G+S  +AA +   
Sbjct: 439 FKSINDTYGHAVGDQVIVGISQLFSHRLRSTDIVGRYGGEEFVIIMPGTSSDKAARVVER 498

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           LR+  E    +++   S H T SAGIA+    + + T+  RADQALY AK++GRN    
Sbjct: 499 LRRDYEQVTFSVND-ASFHSTFSAGIAQWQFGDRVETLRERADQALYAAKQNGRNTFCI 556


>gi|284991825|ref|YP_003410379.1| diguanylate cyclase [Geodermatophilus obscurus DSM 43160]
 gi|284065070|gb|ADB76008.1| diguanylate cyclase [Geodermatophilus obscurus DSM 43160]
          Length = 388

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 103/248 (41%), Gaps = 24/248 (9%)

Query: 27  FMIYFSIFFSIFIATVIF----IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL 82
            +++ S   + F+ T +     +A +    I L   Y     +   +++   ++  +   
Sbjct: 123 MLLFPSFVAAWFLGTRMLGATMLATVAACTIALEHTYDGVLTIAVQVAISAGALNTAAFG 182

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFD 135
            ++    ++ L  +   +S     D L+GL N    +               +++ +  D
Sbjct: 183 VHVLRRRVQRLLEATQALSHQ---DPLTGLANRRFLLEQAPRVWRQARREGSRVAAMVLD 239

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D+FKQ+ND  GH  GD V+  ++  L         + R GGEE     L S   EA  L
Sbjct: 240 LDHFKQLNDAHGHAAGDAVLRAVATSLAATVRPSDVLARTGGEELIVLGLVSDPAEAHRL 299

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH------KEPISTIIYRADQALYVAKK 249
           A  LR  +  S+    +     +T S GIA           + +  ++ RAD A+Y AK+
Sbjct: 300 AERLRAAVRTSR----TDEGHAVTASIGIALDRPVDGEEAGDAMWRLVDRADGAMYAAKQ 355

Query: 250 SGRNRVVC 257
           +GR+RV  
Sbjct: 356 AGRDRVAA 363


>gi|268608444|ref|ZP_06142171.1| hypothetical protein RflaF_02965 [Ruminococcus flavefaciens FD-1]
          Length = 337

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 104/221 (47%), Gaps = 9/221 (4%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLS---LVIISITISLLLGYISGSILKELFISYNR 99
           I +A  ++   G   F+G  Y   +  +    +  ++T+   L + S  ++  +  S  +
Sbjct: 120 IVVALFYVICTGYVAFFGPIYHPDQKFAAFFWIFNAVTVFGFLIFYSRYLITSIISSQEK 179

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           + + +  D L+ L N    +  L        +  +   DID FK+IND +GH  GD+V+ 
Sbjct: 180 LIEAAHFDRLTHLYNRHYMLERLEEVPADGRESFLAMSDIDNFKKINDTYGHNGGDEVLK 239

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++D++  +  +   V R GGEEF          +   +   LRK IE+  I+   G  I
Sbjct: 240 TVADKIKNIC-SSCIVARWGGEEF-LILSSEPLPDGKDMLERLRKNIESESISF-EGQEI 296

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +T++ G+A R   + I   +  AD  LY+ K SG+N+VV 
Sbjct: 297 RVTLTIGMAVRKSGQSIDKWVQDADNKLYIGKNSGKNKVVI 337


>gi|262274845|ref|ZP_06052656.1| GGDEF family protein [Grimontia hollisae CIP 101886]
 gi|262221408|gb|EEY72722.1| GGDEF family protein [Grimontia hollisae CIP 101886]
          Length = 557

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 66/182 (36%), Positives = 92/182 (50%), Gaps = 13/182 (7%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
               +  +S +   D L+GLLNHS         +S    + + +S V  DID+FK IND 
Sbjct: 370 RVRRFRALSAMMDRDSLTGLLNHSNLKMALERELSRACRHKKPISFVMIDIDHFKSINDQ 429

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GHPVGDKVI  ++  L   F       R GGEEFA     +    A  L ++ R     
Sbjct: 430 YGHPVGDKVIKGVARLLNYRFRKTDTSARYGGEEFALILPDTPADIALRLIDEFRNTFSK 489

Query: 206 SQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +    S+GP   + T+SAGIA     + +  +I  AD +LY+AKK GRNRVV   ++   
Sbjct: 490 TPF--SNGPETFYATLSAGIATFPEFDTVEALIEAADSSLYLAKKQGRNRVVTHVEL--- 544

Query: 265 TC 266
           TC
Sbjct: 545 TC 546


>gi|289207324|ref|YP_003459390.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
 gi|288942955|gb|ADC70654.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
          Length = 355

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 107/252 (42%), Gaps = 18/252 (7%)

Query: 20  ESFSPHTFMIYFSIFFSIFIATVIFIA------NIFLFYIGLTPFYGLEY-ILVENLSLV 72
             F      IY SI ++  I+ +           I +  +  +    LE  +L  +L  V
Sbjct: 107 PQFLVFAPEIYLSIMWTFAISGLALRQAALAATGIVVLVVAASLLQTLETGLLQLHLLWV 166

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSY 125
           + + +   L  ++    LK  F+    ++  +++D L+ L N +               Y
Sbjct: 167 LAAFSFGCLSAFVLERALKLTFLQQRELAHSAQVDELTSLSNRAHIEQLFEEECARTERY 226

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            +  S++  DIDYFK +ND +GH  GD V+   ++ L         +GR+GGEEF     
Sbjct: 227 GQPFSVILIDIDYFKAVNDTWGHRTGDTVLKQFAELLRQNLRKVDAIGRIGGEEFFVLLP 286

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            +  ++A   A DL+  I     +         T S G+ E    E       RADQALY
Sbjct: 287 QTDAEQAQAAARDLQARINAFDFDAVGRR----TASFGVTEYRPGERRVDTFDRADQALY 342

Query: 246 VAKKSGRNRVVC 257
            AKK+GRNR+  
Sbjct: 343 AAKKNGRNRIEV 354


>gi|218289743|ref|ZP_03493951.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240200|gb|EED07384.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 799

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 9/184 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDID 137
           ++    +    ++  R++ L+  D L+ L N   F + +  +       +++ I+F D+D
Sbjct: 357 FLVARDVTAEKVAAERMNYLAFHDTLTHLANRRHFEARVDEFIHDAQPGDEMQILFVDLD 416

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND  GH  GDK++  ++  L  V G    V R+GG+EF         + A  +A+
Sbjct: 417 RFKSVNDTLGHEFGDKLLQEIARILKEVAGEDALVARMGGDEFTITLFHQPMERAVAVAD 476

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +   +    + +   P +++T S GIA    H      ++  AD A+Y AK  GR+   
Sbjct: 477 AILNRLRK-PVRVEDRP-LYMTASVGIASFPRHGVTRDMLLRHADLAMYTAKAEGRSTYR 534

Query: 257 CFSD 260
            F +
Sbjct: 535 LFEE 538


>gi|170700638|ref|ZP_02891636.1| diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria
           IOP40-10]
 gi|170134457|gb|EDT02787.1| diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria
           IOP40-10]
          Length = 779

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 97/208 (46%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVIISITISLLLGYISGS--ILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +Y    N+ L++ S     +L + S +  ++ +L      ++QL+  D L+GL N  A +
Sbjct: 291 DYTHTRNVYLLMTSFITLAMLAFFSVATGLIGKLLGREREMTQLAEYDLLTGLANRYATL 350

Query: 120 SSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
             L       +   +L ++F D+D FK +ND  GH  GD V+   + +L    G    + 
Sbjct: 351 RGLRNDVSMPASLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTASRLSDAVGDEGSLA 410

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EF     G   E+ A  LA  + ++    +     G S  +  S GIA      E
Sbjct: 411 RIGGDEFVVVMKGDDVERRAVRLAEAIIRMF--GEPFDVRGSSFVLHASIGIALHSVANE 468

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +AD A+Y AK +G+N    ++
Sbjct: 469 SEIDLLKKADLAMYSAKDAGKNCYQFYA 496


>gi|163791379|ref|ZP_02185790.1| hypothetical protein CAT7_10515 [Carnobacterium sp. AT7]
 gi|159873349|gb|EDP67442.1| hypothetical protein CAT7_10515 [Carnobacterium sp. AT7]
          Length = 365

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 111/225 (49%), Gaps = 9/225 (4%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENL---SLVIISITISLLLGYISGSILKELFIS 96
           A + ++  + +  I L  F+  + IL+ +L   SL+I+S  + +++      ++K L + 
Sbjct: 135 AVLSWLNVVCVSAITLNLFFFYDDILLSSLICISLLILSSIVVIVVTAFIEDLIKNLHL- 193

Query: 97  YNRISQLSRIDCLSGLLNHSAFIS-----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           Y  I + +++D L+GL N   F                + +  DID+FK IND +GH  G
Sbjct: 194 YLEIQEQAQMDYLTGLYNMRVFNKKWQTIQADKSIATTAFMMLDIDHFKWINDTYGHANG 253

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           + ++  L+  L V       + R+GGEEF          E    A  +R  + + +  + 
Sbjct: 254 NFILRQLAVILQVGAPDNELIYRVGGEEFCIILNNLPYVEQKKTAEKIRASVASKEFLLE 313

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +G  I+IT+S G+A    K+ +  +   AD+ LY+AK  GRN+V+
Sbjct: 314 NGAGIYITVSIGLAASTQKKDMKKLFRLADRCLYMAKDQGRNKVI 358


>gi|119945057|ref|YP_942737.1| diguanylate cyclase [Psychromonas ingrahamii 37]
 gi|119863661|gb|ABM03138.1| diguanylate cyclase [Psychromonas ingrahamii 37]
          Length = 543

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 117/242 (48%), Gaps = 21/242 (8%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS 88
           I  ++  +I  AT++    IF + I +  F     I+ + +  +  S + + +   + G 
Sbjct: 305 INLTVILNIIAATLLL---IFYWIIVVRGFGNRLTIISQAMRSIPTSDSDTKI--RVRGR 359

Query: 89  I-LKELFISYNRI-------SQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVF 133
             +  +  +  R+        Q++ ID L+ + N ++F                K  I+ 
Sbjct: 360 DEIAAMARALERLLKEALLTHQMATIDHLTQVNNRASFFTYAEKETERSKRRPNKTCIMM 419

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK IND +GH VGDK+++ ++D  +    T     RLGG+EF      +      
Sbjct: 420 IDIDHFKHINDTYGHDVGDKLLSLVADNCLKCTRTIDVFARLGGDEFTLMMPDTDLVSGR 479

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252
           + A  LR+ I+  Q+ ++    I +T S GI+  + ++ PI T + +AD+ALY+AK  GR
Sbjct: 480 LAAERLRQRIDELQLELTPDVIIKVTTSIGISVVKLNETPIETALIQADKALYLAKTGGR 539

Query: 253 NR 254
           N+
Sbjct: 540 NQ 541


>gi|75910347|ref|YP_324643.1| diguanylate cyclase [Anabaena variabilis ATCC 29413]
 gi|75704072|gb|ABA23748.1| Putative diguanylate cyclase (GGDEF domain) [Anabaena variabilis
           ATCC 29413]
          Length = 591

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 64/279 (22%), Positives = 113/279 (40%), Gaps = 35/279 (12%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE----- 67
           L  +  + + +P    I+ ++F  + IA+V+ I    +  +   P   L  I+ +     
Sbjct: 309 LFAQPLVVALAPVEKQIHDAMFLFVLIASVVTIIAFAIGQLLTRPIIYLTNIVFQFTTGN 368

Query: 68  --------------NLSLVIISITISLLLGY-----ISGSILKELFISYNRISQLSRIDC 108
                          L+    ++   L   +            EL I+  ++ QL  +D 
Sbjct: 369 LNIRAKISSTDEIGQLAKSFNNMAFQLQTSFETLEQRVQERTAELVIANQKLEQLVNLDG 428

Query: 109 LSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ + N   F   L           + LS++ FD+D FK  ND +GH  GD  +  ++  
Sbjct: 429 LTQVANRRCFDERLKAEWKRLAREQQPLSLILFDVDKFKSYNDYYGHLGGDDCLITIAQA 488

Query: 162 LVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHIT 219
           +   +      + R GGEEF+     +    A  +A  +++ I +  I  + S     +T
Sbjct: 489 VQQKLHRPADLLARYGGEEFSILLPNTDLLGAIKVAQIIQQAIYDQAIPHAQSDIKDIVT 548

Query: 220 ISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVV 256
           +S GI        I   T+I  AD+ALY AK+ GR+R  
Sbjct: 549 LSLGITSIIPAGDINPDTLIASADKALYNAKQQGRDRYC 587


>gi|296450338|ref|ZP_06892097.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296878750|ref|ZP_06902753.1| probable signaling protein [Clostridium difficile NAP07]
 gi|296260831|gb|EFH07667.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296430257|gb|EFH16101.1| probable signaling protein [Clostridium difficile NAP07]
          Length = 395

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 114/287 (39%), Gaps = 35/287 (12%)

Query: 5   LKDFLSIWLCHEKNLESF-----SPHTFMIYFSIFFSIFIA--TVIFIANIFLFYIGLTP 57
              F  +W C    L+       S  ++++  +  FS+     +VI     FLF     P
Sbjct: 111 YVTFFCLWGCVITLLDQLGGNDLSVFSYIMLAAAAFSVLKLGESVIVFGGCFLFLNFFLP 170

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELF----------ISYNRISQLSR-- 105
             G++ I     S ++ +  I+ L  ++S  + +               Y  I  ++   
Sbjct: 171 --GIQTIPGNEFSNIVNTFFITSLAVFVSTMLYRSRVFTYYDKLLISQQYEEIYHINNLL 228

Query: 106 -----IDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
                 D L+ + N       L          E ++ +  DIDYFKQ NDN+GH  GD  
Sbjct: 229 NDKVMTDDLTKMNNRRYLEDILQKKLISHANQEPITGMMIDIDYFKQFNDNYGHQKGDYC 288

Query: 155 IAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  ++  ++           R GGEEF        E++A + +  LRKIIE         
Sbjct: 289 LQNIAKVILDFTSSENEHAIRYGGEEFFICIFNCDEEDAKLKSECLRKIIETCNFERDDI 348

Query: 214 PSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCF 258
           P   +T+S G+     +  I  +  I   D+ALY AK+ GRN V  +
Sbjct: 349 PLKCVTVSIGVYTNKIERTITLNEFISNCDKALYTAKEQGRNCVAFY 395


>gi|264677814|ref|YP_003277720.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262208326|gb|ACY32424.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 397

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 114/235 (48%), Gaps = 14/235 (5%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           +++ S+ F+ +  T   I ++ L Y     F    Y L+  +S++  +I  +L++  I+ 
Sbjct: 153 LLWLSMIFTAYTLTRPMIISL-LGYPDPRSFPRSPYWLLTLVSILNFAILFTLVMTVIAT 211

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQI 142
                   +  ++ +   +D L+ +LN  +F               ++++  DID+FK+I
Sbjct: 212 ------KETVGKLQKERDLDTLTQILNRRSFHEYALKLLTDMRLYPMAVLACDIDHFKRI 265

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GDKV+  +S  L         V R GGEEF    +  + ++A  +A  +R+ 
Sbjct: 266 NDTWGHEYGDKVLQLVSATLQNHVRERDLVARFGGEEFVILLIDIALRDAEEIAQRIRQD 325

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +++  + SG    +T+S GI+       +   +  ADQ LY AK +GR++V  
Sbjct: 326 LRSNKDLLLSGT--KLTMSFGISSITDPSQLDHALREADQLLYQAKNAGRDQVHV 378


>gi|238063361|ref|ZP_04608070.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
 gi|237885172|gb|EEP74000.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
          Length = 722

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 11/180 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQI 142
            + E +    R+   +  D L+GL N + F  +LG        + ++ + F D+D FK +
Sbjct: 267 DITERYELQQRLRFQALHDPLTGLPNRTLFFETLGRVLDDAGPDHRIGVCFLDLDGFKAV 326

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAAL-GSSEQEAAILANDLR 200
           ND+ GH +GD+++  ++ +L     G    V R+GG+EF      G    +A  +A    
Sbjct: 327 NDSLGHDLGDRLLVEIARRLAECVAGHGHLVARMGGDEFVILVDGGEGIDDAVGVAEMAL 386

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
             +  S         + ++ S GI E    E   S ++  AD  LY AK  GR R   + 
Sbjct: 387 AAV--SAPVHVGDQQLAVSASIGIVECPSGETSASELMRAADTTLYWAKAEGRGRWAVYD 444


>gi|213859814|ref|ZP_03385518.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 437

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF      +S    E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSESLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 394 VFSPEMNQ 401


>gi|77465404|ref|YP_354907.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides 2.4.1]
 gi|77389822|gb|ABA81006.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides 2.4.1]
          Length = 881

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 14/219 (6%)

Query: 56  TPFYGLEYILVE-NLSLVIISITISLL-------LGYISGSILKELFISYNRISQLSRID 107
            P + L Y +   +    I+SI  + L          IS + +     S  R+ + +  D
Sbjct: 401 APLHDLRYAIRRPDGQFGILSINAAPLPQAADDARIVISVTDITHAEASAERLRRQAAED 460

Query: 108 CLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
            L+GL N  A   ++ +        ++V  D+D FK +ND   H  GD V+   +D+L  
Sbjct: 461 PLTGLANRRALADAVETRLTEAAPFALVMLDLDNFKAVNDLQRHDTGDAVLRIAADRLRA 520

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           V G    V R+GG+EF   A G+    A  LA  LR  I ++ I +   P +H+  SAGI
Sbjct: 521 VAGADCLVARMGGDEFMVLAPGTDAASAPRLAEALRAAI-SAPIEVGRQP-VHLAASAGI 578

Query: 225 AERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           A    H   ++ ++  AD AL+ AK++GRNR V  S  +
Sbjct: 579 ALHPEHGTSMALLMTGADIALHAAKRAGRNRSVLLSQAQ 617


>gi|15889298|ref|NP_354979.1| GGDEF family protein [Agrobacterium tumefaciens str. C58]
 gi|15157134|gb|AAK87764.1| GGDEF family protein [Agrobacterium tumefaciens str. C58]
          Length = 579

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 10/177 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN------EKLSIVFFDIDYFK 140
           G + ++      ++  LS  D L+G+ N  A   S+ +        + L ++  DID+FK
Sbjct: 394 GEMEEQQRALSEQLRTLSETDALTGVFNRRALEKSVRAILSGDEDYQSLGVMIIDIDHFK 453

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH +GD  +   +  L         + R GGEEF       S   A   A+ LR
Sbjct: 454 SINDRYGHAMGDLALQKTASLLKGALRKTDILARYGGEEFVVVLQDVSHATATATADRLR 513

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255
           ++IE    +  +G  + +T S G+  +  +       +I  AD  LY AK++GRNRV
Sbjct: 514 RLIEVQTFDEQTG--LSLTASFGVVWQEARAINSWDELIAIADDRLYEAKRAGRNRV 568


>gi|332759276|gb|EGJ89584.1| protein gmr domain protein [Shigella flexneri 2747-71]
 gi|333005559|gb|EGK25077.1| protein gmr domain protein [Shigella flexneri K-218]
          Length = 289

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 91/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 64  SGTDITEERRTQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 123

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 124 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 182

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    +TII  AD A+Y AK+ GR +   F
Sbjct: 183 --LTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSATIIRHADTAMYTAKEGGRGQFCVF 240

Query: 259 SDIENN 264
           +   N 
Sbjct: 241 TPEMNQ 246


>gi|228937866|ref|ZP_04100494.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228970747|ref|ZP_04131387.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228977322|ref|ZP_04137717.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407]
 gi|228782299|gb|EEM30482.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407]
 gi|228788872|gb|EEM36811.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228821772|gb|EEM67772.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 569

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 88/174 (50%), Gaps = 6/174 (3%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGH 148
            L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  GH
Sbjct: 136 RLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLGH 195

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD +++ ++ +L  V G    + RLGG+EF        + + + LA  +    +    
Sbjct: 196 MIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQA--P 253

Query: 209 NISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 254 FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 307


>gi|89093074|ref|ZP_01166025.1| diguanylate cyclase (GGDEF domain) [Oceanospirillum sp. MED92]
 gi|89082724|gb|EAR61945.1| diguanylate cyclase (GGDEF domain) [Oceanospirillum sp. MED92]
          Length = 747

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 63/197 (31%), Positives = 100/197 (50%), Gaps = 16/197 (8%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHS-------AFIS 120
           + +++  + +   +G      +    +SYNR +  ++  D L+G+ +         +F+ 
Sbjct: 558 IWIILAGVAVIAAIGLYRYFTV----LSYNRMLQTIAEKDALTGICSRHKLRSEMDSFVD 613

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               +N  LS+VFFDID FKQIND +GH  GD V+  LS  +  +       GR GGEEF
Sbjct: 614 LANRHNWNLSMVFFDIDDFKQINDQYGHASGDIVLVELSKLVSKMSRKTDRFGRWGGEEF 673

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
               L +  ++A  +A+  R  IEN+++    G    IT S G+A+    E +   + RA
Sbjct: 674 LFIMLETDFEDARKIADKFRDKIENAEL----GVGQPITCSMGVAQYIRGETVEQWVARA 729

Query: 241 DQALYVAKKSGRNRVVC 257
           D ALY AK +G+N V  
Sbjct: 730 DTALYEAKAAGKNCVRV 746


>gi|323493519|ref|ZP_08098641.1| sensory box/GGDEF family protein [Vibrio brasiliensis LMG 20546]
 gi|323312342|gb|EGA65484.1| sensory box/GGDEF family protein [Vibrio brasiliensis LMG 20546]
          Length = 303

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 12/186 (6%)

Query: 81  LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNE-KLSIV 132
           ++G I   + + +L      +++ +  D L+ L N                 N+  L  +
Sbjct: 120 VIGLIGVSTDITDLVHMRELLTEQANTDELTKLYNRRKLWEFFSESYHAAKLNQLPLCCI 179

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FKQ+ND+ GH  GD VI  L+D +          GR+GGEEF      + + EA
Sbjct: 180 IIDIDHFKQVNDDHGHDFGDNVIVELADIIRHNLRKTDCCGRIGGEEFLVVLNRTDQDEA 239

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSG 251
             +A  LR     S +N    P    ++S G+ +    +     +  RAD ALY AK  G
Sbjct: 240 YQIAERLRIQFLESSLNSQHKP---FSLSCGVTQLNPGDNEFLDLYRRADNALYRAKHQG 296

Query: 252 RNRVVC 257
           RN+   
Sbjct: 297 RNQTYI 302


>gi|228957047|ref|ZP_04118822.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229042486|ref|ZP_04190231.1| Sensory box/GGDEF [Bacillus cereus AH676]
 gi|229108234|ref|ZP_04237856.1| Sensory box/GGDEF [Bacillus cereus Rock1-15]
 gi|229126059|ref|ZP_04255081.1| Sensory box/GGDEF [Bacillus cereus BDRD-Cer4]
 gi|229143352|ref|ZP_04271783.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24]
 gi|229148966|ref|ZP_04277211.1| Sensory box/GGDEF [Bacillus cereus m1550]
 gi|228634506|gb|EEK91090.1| Sensory box/GGDEF [Bacillus cereus m1550]
 gi|228640159|gb|EEK96558.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24]
 gi|228657381|gb|EEL13197.1| Sensory box/GGDEF [Bacillus cereus BDRD-Cer4]
 gi|228675250|gb|EEL30472.1| Sensory box/GGDEF [Bacillus cereus Rock1-15]
 gi|228726839|gb|EEL78051.1| Sensory box/GGDEF [Bacillus cereus AH676]
 gi|228802678|gb|EEM49520.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 569

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 88/174 (50%), Gaps = 6/174 (3%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGH 148
            L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  GH
Sbjct: 136 RLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLGH 195

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD +++ ++ +L  V G    + RLGG+EF        + + + LA  +    +    
Sbjct: 196 MIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQA--P 253

Query: 209 NISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 254 FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDE 307


>gi|163842484|ref|YP_001626888.1| diguanylate cyclase [Brucella suis ATCC 23445]
 gi|163673207|gb|ABY37318.1| diguanylate cyclase (GGDEF) domain [Brucella suis ATCC 23445]
          Length = 703

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFF 134
           L+G +    + E      R+  ++  D L+GL N + F   +GS  +        ++ + 
Sbjct: 249 LIGLV--EDITERREIEKRMVHIAMHDSLTGLPNRAYFPHHVGSLLKKGSDCDPFALFYL 306

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK +ND+  H  GD+++  ++ +L  +     F+ RLGG+EFA      +  + A+
Sbjct: 307 DIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGTLAQIAM 366

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
            A+ +    ++    +  G +  +T S GIA+   H +    ++  AD ALY +K  GR 
Sbjct: 367 FADRVLSAFQD--PFVLGGNAEFVTCSMGIAQAPLHGDNPDVLMRNADLALYASKSGGRR 424

Query: 254 RVVCFSD 260
               + D
Sbjct: 425 TFRFYQD 431


>gi|327191523|gb|EGE58538.1| putative kinase/esterase protein [Rhizobium etli CNPAF512]
          Length = 790

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 90/206 (43%), Gaps = 11/206 (5%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------IS 120
           +++ ++I++  S+LL  +  S L EL  S     QL+  D L+ L N + F       ++
Sbjct: 296 SIAALVIAVLFSVLLVRLRSS-LGELKRSELHARQLALHDVLTDLPNRALFAMRFEECLA 354

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 E+ ++   D+D FK +ND FGH  GD++I   ++++  V      + RLGG+EF
Sbjct: 355 ETRHSTERSAVALLDLDRFKAVNDTFGHAAGDELIRMAAERIRSVLRPGDTLARLGGDEF 414

Query: 181 AAAALGS--SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTII 237
           A         +Q    + + +   +      +       +  S G+            ++
Sbjct: 415 ALLLRDIRNDDQVLLSICDAIVAELGRPFPLLRGEAVARVGGSIGLTIVPDAGRTADDLM 474

Query: 238 YRADQALYVAKKSGRNRVVCFSDIEN 263
             AD ALY AK  GR +   +S   +
Sbjct: 475 RYADVALYEAKMGGRGQWRVYSPSMD 500


>gi|254517033|ref|ZP_05129091.1| diguanylate cyclase [gamma proteobacterium NOR5-3]
 gi|219674538|gb|EED30906.1| diguanylate cyclase [gamma proteobacterium NOR5-3]
          Length = 456

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/173 (31%), Positives = 85/173 (49%), Gaps = 8/173 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           +EL    NR  +    D L+G  +  A+   L         Y E   +V  DID+FK++N
Sbjct: 282 EELTQKLNRNREKLMRDTLTGAHSRLAYDEMLAQEMSRYRRYQEPFCLVMLDIDFFKRVN 341

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGH  GDK +  ++  +        ++ R+GGEEF      +    A  L + +R  +
Sbjct: 342 DRFGHAAGDKALQLVASLVSDRIRETDYLFRVGGEEFVLLLPRTELAAAVPLVDAIRSDV 401

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +S  +    P + IT+SAG+      +   TI  RAD A+Y AKK+GR+R+V
Sbjct: 402 GDSGFHYDDQP-VQITLSAGVTAMRSDDTPETIFARADDAMYRAKKAGRDRLV 453


>gi|117618601|ref|YP_857728.1| GGDEF domain-containing protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560008|gb|ABK36956.1| GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 318

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 83/186 (44%), Gaps = 13/186 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           IS   + E  +    ++ LS  D L+GL N   F S L             +S +  D+D
Sbjct: 128 ISHINVTERKLQELDMAYLSLHDPLTGLANRRLFNSFLHNEWRRSMREQTPISFIMLDLD 187

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
            FK  ND+FGH VGD  +  +   L            R GG+EFA     + ++ A+ + 
Sbjct: 188 NFKLCNDHFGHQVGDGFLQQVGQLLSTFCQRATDLPCRFGGDEFALILGNTGDEAASRMG 247

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRN 253
             +R  I    I  + G  + ++ S GIA    ++       ++  AD ALY+AK+ G+N
Sbjct: 248 EAIRVGIGELLIPGADG--LRLSASVGIATLLPQQARVSEEELLTAADMALYLAKQGGKN 305

Query: 254 RVVCFS 259
           R  C S
Sbjct: 306 RCHCVS 311


>gi|308185567|ref|YP_003929698.1| hypothetical protein Pvag_0026 [Pantoea vagans C9-1]
 gi|308056077|gb|ADO08249.1| Uncharacterized membrane protein [Pantoea vagans C9-1]
          Length = 365

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 7/186 (3%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFK 140
            +  ++ +L+      S LS +D L+GL N     + L +  E  +    ++  DID+FK
Sbjct: 172 FTLRLMHQLYEEKETFSDLSMLDPLTGLYNRRGLKNRLDNILENHAGSHYVLLLDIDHFK 231

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
             NDN+GH +GD+ +A +S  +     +   V R GGEEF       +   A  LA  +R
Sbjct: 232 AYNDNYGHAMGDQALARVSVAIRDAVRSRDVVTRYGGEEFLVLMTNVNSSIAMKLAERIR 291

Query: 201 KIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + + + +I      ++  H+TISAGIA   +       +  AD ALYVAK  GRN ++ +
Sbjct: 292 QYVLDLEIPHLFNETVSTHVTISAGIA-PIYDNEFDLAVANADSALYVAKNQGRNTILAW 350

Query: 259 SDIENN 264
            D+   
Sbjct: 351 EDLPRQ 356


>gi|302187657|ref|ZP_07264330.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 820

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 18/192 (9%)

Query: 83  GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           G ISG++L    ++  +     +S  +  D L+GL+N S F   L               
Sbjct: 348 GVISGAVLVLHDMTQEQQYIADLSWQAAHDPLTGLVNRSEFERRLQRVLDEDCGQGRSHC 407

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F D+D FK +ND  GH  GD+++  L   L         + RLGG+EF    +    +
Sbjct: 408 LMFLDLDQFKLVNDTGGHAAGDELLRQLCRDLPHGLRDGDTLARLGGDEFGVLLVDCPAE 467

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI---IYRADQALYVA 247
            A  +A  LR++++     +  G     T+S G+      +  +++   +  AD A Y+A
Sbjct: 468 TALDIAEALREVVQRLHF-MWKGRPFMTTVSIGLVHL--GDTPASLEGSLSAADMACYMA 524

Query: 248 KKSGRNRVVCFS 259
           K+ GRNRV  +S
Sbjct: 525 KERGRNRVQAYS 536


>gi|270158764|ref|ZP_06187421.1| putative response regulator, PAS/GGDEF/EAL domain-containing
           protein [Legionella longbeachae D-4968]
 gi|289166434|ref|YP_003456572.1| regulatory protein (GGDEF and EAL domains) [Legionella longbeachae
           NSW150]
 gi|269990789|gb|EEZ97043.1| putative response regulator, PAS/GGDEF/EAL domain-containing
           protein [Legionella longbeachae D-4968]
 gi|288859607|emb|CBJ13577.1| regulatory protein (GGDEF and EAL domains) [Legionella longbeachae
           NSW150]
          Length = 752

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 13/185 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           S   + E      ++   +  D L+ L N       +          N   +++F D+D 
Sbjct: 306 SFQDISERISLTAKLEFQATHDALTELPNRILLFDRIHHAITHAQRINSLFAVIFIDLDR 365

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS---EQEAAIL 195
           FK IND+F H  GD ++  +S +L  +      + RL G+EF    L  S    ++   +
Sbjct: 366 FKLINDSFSHAAGDSLLKEISSRLKKIMREEDTIARLSGDEFIFILLSESLKKPEDIMAI 425

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
            + +   I  ++    S   I IT S GI+        +  +I  AD A+Y AK  G N+
Sbjct: 426 CDKILAAI--TKAITISKREILITASMGISIYPQDGSNVDELIRNADLAMYNAKALGGNQ 483

Query: 255 VVCFS 259
              +S
Sbjct: 484 YQFYS 488


>gi|206560808|ref|YP_002231573.1| putative cyclic-di-GMP signaling protein [Burkholderia cenocepacia
           J2315]
 gi|198036850|emb|CAR52750.1| putative cyclic-di-GMP signaling protein [Burkholderia cenocepacia
           J2315]
          Length = 790

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 101/208 (48%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVIIS-ITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +Y    N+ L++ S IT+++L  + ++  ++ +L      ++QL+  D L+GL N  A +
Sbjct: 302 DYTHTRNVYLLMTSFITLAMLAFFGVATGLIGKLLGREREMTQLAEYDLLTGLANRYATL 361

Query: 120 SSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
             L       +   +L ++F D+D FK +ND  GH  GD V+   + +L         + 
Sbjct: 362 RGLRNDVSMPASLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTASRLADAVDDEGSLA 421

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EF     G   E+ A  LA  + ++   S+     G S  +  S GIA      E
Sbjct: 422 RIGGDEFVVVMKGDDVERRAVRLAEAIIRMF--SEPFDVRGSSFVLHASIGIALHTVANE 479

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +AD A+Y AK +G+N    ++
Sbjct: 480 SEIDLLKKADLAMYSAKDAGKNCYQFYA 507


>gi|152988006|ref|YP_001347170.1| hypothetical protein PSPA7_1787 [Pseudomonas aeruginosa PA7]
 gi|150963164|gb|ABR85189.1| hypothetical protein PSPA7_1787 [Pseudomonas aeruginosa PA7]
          Length = 381

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 69/262 (26%), Positives = 117/262 (44%), Gaps = 17/262 (6%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFF--SIFIATVIFIANIFLF-YIGLTPFYGLEYILVENL 69
           L H  + +       ++ F+ +F   + +A  +  A I L  Y+G   + G    L  NL
Sbjct: 120 LAHRADPDYPYEGLLLVSFAAYFLAGLRLAQALSCALIVLLAYLGCEVWAGTHEPLGNNL 179

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------- 122
             ++    I  +  Y+     +E F+    +  ++  D L+GL N  +F   L       
Sbjct: 180 LFLLFGNLIGAVGCYLLEYKSREHFLISRLLRLMADHDSLTGLHNRRSFNQHLDRLWRQA 239

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFA 181
               + L+++  D+D+FK  ND +GH  GD V+  +   L      P     RLGGEEFA
Sbjct: 240 QREQQTLALLLCDVDHFKAYNDRYGHQAGDTVLQRIGGVLEANARRPLDMAVRLGGEEFA 299

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIA--ERCHKEPIS---T 235
               G++E EA + A  LR+ ++  ++      +   +T+S G++         +     
Sbjct: 300 LLLYGANEHEARLRAEALREQVQALRMEHEGSQTAREVTLSIGVSCLWPAPGNDLKRLYD 359

Query: 236 IIYRADQALYVAKKSGRNRVVC 257
           +   AD+ALY AK  GRN+VV 
Sbjct: 360 LYEHADRALYEAKAFGRNQVVA 381


>gi|115526721|ref|YP_783632.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisA53]
 gi|115520668|gb|ABJ08652.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisA53]
          Length = 1223

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/180 (30%), Positives = 84/180 (46%), Gaps = 5/180 (2%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQ 141
           +   +     S  +IS L+  D L+ L N +         L S +  +S++  D+D FK 
Sbjct: 778 THEDITAQERSARQISYLAFHDGLTELANRAELNKQGHLALESSDRPISVLLIDLDRFKA 837

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND FGH  GD+++  ++ ++  + G    V R+GG+EFA       +Q  A +A   R 
Sbjct: 838 VNDTFGHAAGDRLLQLVAIRMRALAGPKDLVARVGGDEFAILQAPCPDQREAAIALASRT 897

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
           I    Q     G    I  S GIA R  +      +I++AD ALY  K  GRN  + + D
Sbjct: 898 IEVLRQPFDLGGKQASIGASIGIAVRSPQTVRFDDLIHQADLALYEIKSGGRNDCLLYED 957


>gi|295400309|ref|ZP_06810288.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294977584|gb|EFG53183.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 614

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/268 (27%), Positives = 123/268 (45%), Gaps = 23/268 (8%)

Query: 16  EKNLESFSPH--TFMIYFSIFFSIFIATVIFIANIF--LFYIGLTPFYGLEYILVENLSL 71
           E N ++  P+  + ++YFS+   +     +F   IF   F +G+     + Y +   LSL
Sbjct: 131 EINTQNLLPYMISLVVYFSLNICLMFLFFVFFDRIFKGTFDLGVLLESAIGYSVTLLLSL 190

Query: 72  VI---------ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           V+           + +  +L  I  ++ ++    Y  +S+ +  D L+GL NH  F   L
Sbjct: 191 VLAILLNEKRYFGLFLFTVLVAILSAVFRKFLYLYQEVSERANKDHLTGLYNHGYFKEML 250

Query: 123 GSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GR 174
                      +  ++   D+D FK+ ND  GH  GDK++ F  + L        FV  R
Sbjct: 251 NEQFRDAKKLKQPFTLALLDLDDFKKYNDRNGHLQGDKLLQFFGELLKKAVDGTDFVAAR 310

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKE-P 232
            GGEEFA    G++++EA    + LRK I ++  +         ++ S GIAE       
Sbjct: 311 YGGEEFAILMPGTTKEEAFSFLDRLRKEINDTYFSGVEHVPYRCLSFSCGIAEMERSMYD 370

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSD 260
              +I++ADQALY AK  G+N V  + +
Sbjct: 371 SGELIHKADQALYYAKAQGKNNVQIYEE 398


>gi|269963795|ref|ZP_06178112.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831475|gb|EEZ85617.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 775

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 78/186 (41%), Gaps = 11/186 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           S ++    S   ++  ++ D L+GL N       L             + ++F D+D+FK
Sbjct: 332 SEIERRKSSEMELAYQAKHDSLTGLPNRVYGSERLDLELSRAERMGSNVLVMFIDLDHFK 391

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199
           QIND+ GH VGD+V+   +++L         + R+GG+EF            A   A  +
Sbjct: 392 QINDSMGHFVGDEVLKLAAERLHNAVRKTDLLARIGGDEFLLVIPDLQDADSAKRFATTV 451

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++  +       ++ S G++      +    ++  AD A+Y  K+ GR+    +
Sbjct: 452 LSVF--NEPFVWQNHEFFLSASVGMSVFPEDGDNAEQLLACADMAMYRVKQDGRDAFCFY 509

Query: 259 SDIENN 264
               N 
Sbjct: 510 DHNMNQ 515


>gi|317049552|ref|YP_004117200.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Pantoea sp.
           At-9b]
 gi|316951169|gb|ADU70644.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Pantoea sp.
           At-9b]
          Length = 699

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 10/183 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           +L  + N + QL+  D L+ L N       L +        ++  +++F D+D FK +ND
Sbjct: 247 KLKHANNELRQLAMHDNLTTLPNRVLLEQQLDAAVKHATLNDQTFALMFMDLDGFKAVND 306

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGD ++  ++ +L       + + RLGG+EF   +  S   +AA +A  L   I+
Sbjct: 307 TWGHHVGDCLLVAVAARLRNQLREDVILARLGGDEFVLLSPDSDGLQAATIAQRLVNTID 366

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                     S+ +++S GI     H      +++ AD A+Y  K SGRN    F    +
Sbjct: 367 A--PFELDRYSLRVSLSVGIVIFPLHGRSKQEMMFNADSAMYHTKHSGRNGWCLFEPAMS 424

Query: 264 NTC 266
              
Sbjct: 425 TVA 427


>gi|194367772|ref|YP_002030382.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
 gi|194350576|gb|ACF53699.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
          Length = 426

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 105/237 (44%), Gaps = 38/237 (16%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI 100
           T + +A + L+++   P   L+ +L+  LS   + + +        G++L+E F      
Sbjct: 196 TAMLLALLCLWWM--LPRVFLQPVLLPALSCAALLLVL--------GAMLQESF------ 239

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
             ++  D L+GL    AF  +L       SI   D+D+FK  ND  GH  GD V+  ++ 
Sbjct: 240 -HMAFRDELTGLPGRRAFNETLQRARGTYSIAMVDVDHFKSFNDTHGHDTGDDVLRLVAS 298

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-------- 212
           +L  V G      R GGEEFA   L             LR+ IE++++ +          
Sbjct: 299 RLAKV-GDGGRAFRYGGEEFAVVFLDRPAAACVDAVEALRQSIEDTRMQLRDRSTRSRDD 357

Query: 213 ------------GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                       G  + +T+S G+A+    +  + ++  ADQALY AK  GRN+V  
Sbjct: 358 EAGRQQRGRGGSGQVVQVTVSIGLADSRVDQRPTAVVKAADQALYAAKDGGRNQVHA 414


>gi|220928078|ref|YP_002504987.1| diguanylate cyclase/phosphodiesterase [Clostridium cellulolyticum
           H10]
 gi|219998406|gb|ACL75007.1| diguanylate cyclase/phosphodiesterase [Clostridium cellulolyticum
           H10]
          Length = 856

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 85/185 (45%), Gaps = 9/185 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQI 142
           SI K L  S  + + ++  D L+GL N  + +     +      +K  ++F D+D FK I
Sbjct: 418 SIQKSLSQSEEKYNFMALHDVLTGLPNRRSLLEDSSRFLGINTGKKTVLLFIDMDNFKYI 477

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRK 201
           ND  GH  GD++I     +L         + RLGG+EF         Q EA    + + +
Sbjct: 478 NDTMGHEFGDELINKAGQRLKTALKDLGTLYRLGGDEFILLIYNIENQFEAEDFMSQVLQ 537

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             ++ +  I +   +HIT S G A    H   I  +I  AD A+Y AK+ G+NR V +  
Sbjct: 538 SFKD-EFEIGNSV-LHITFSIGAALYPDHGNNIEDLIKCADIAMYKAKEQGKNRYVLYDR 595

Query: 261 IENNT 265
             +  
Sbjct: 596 DMDKA 600


>gi|332703411|ref|ZP_08423499.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332553560|gb|EGJ50604.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 1040

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 74/190 (38%), Gaps = 11/190 (5%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFD 135
           G +S   L E     + +   +  D L+GL N + F       I         L+I+  D
Sbjct: 572 GVLSMVDLTEQRRYQHELYNKAYFDQLTGLPNRTMFSMRLEAAIVRARREGGGLAIMLLD 631

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAI 194
           +D FK +ND  GH  GD+++     ++         V RLGG+EF         E     
Sbjct: 632 LDDFKNVNDTMGHLAGDEMLRKAGKRVNQAVRKDDLVARLGGDEFVVLVERPHDENLLQR 691

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           +A  L +     +        I  + S G+A           ++  AD A+Y AK SG++
Sbjct: 692 MAARLVRAFA--EPFHLGDREIFASTSVGVARFPQDGNDAEAVLKNADLAMYEAKNSGKH 749

Query: 254 RVVCFSDIEN 263
               FS   N
Sbjct: 750 AYRLFSGEMN 759


>gi|288935188|ref|YP_003439247.1| diguanylate cyclase [Klebsiella variicola At-22]
 gi|288889897|gb|ADC58215.1| diguanylate cyclase [Klebsiella variicola At-22]
          Length = 453

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 83/162 (51%), Gaps = 11/162 (6%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           S  D L+ L N S F  +L            LS++  D+D+FK+INDN+GH  GDKVI F
Sbjct: 291 SIRDPLTRLYNRSFFYDTLNQQLAKVNPQHPLSVIISDLDHFKRINDNYGHVAGDKVIQF 350

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            +  L           R+GGEEFA   + ++E++A  +A  +R  +   Q  +       
Sbjct: 351 AASVLENHSRADDAAARIGGEEFALLLVNTAEKDALAIAERIRLAVNAEQHPLPE----R 406

Query: 218 ITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +TIS G+   R       T + RAD A+Y AK SGRNRVV +
Sbjct: 407 MTISMGLYTTRDRNVSAETCVERADAAMYEAKNSGRNRVVVW 448


>gi|268680795|ref|YP_003305226.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618826|gb|ACZ13191.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 477

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 8/168 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149
             ++ QL+  D L+ L N   F      +          L+++  D+D FK++ND FGH 
Sbjct: 310 QKQLVQLASEDALTKLYNRREFNEQFERFSKMHHKGQTSLALMLIDVDDFKEVNDTFGHL 369

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+V+  L+  L     +   V R GGEEFA   +G   +    +A  L + I++  + 
Sbjct: 370 VGDEVLVRLAQLLKENVRSSDIVARWGGEEFAILLVGVCIETTEEIAQILCERIKHDAV- 428

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +       +++S G+    H E    ++++ D ALY AKK+G+++VV 
Sbjct: 429 LQGILGRALSVSIGVGMFNHLESQDGLVHKVDNALYAAKKAGKDQVVI 476


>gi|226227950|ref|YP_002762056.1| hypothetical protein GAU_2544 [Gemmatimonas aurantiaca T-27]
 gi|226091141|dbj|BAH39586.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 426

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 82/183 (44%), Gaps = 10/183 (5%)

Query: 84  YIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFD 135
           Y+S  + L  L        + S  D L+GL N   F               + + ++  D
Sbjct: 236 YVSLATRLDRLGRQLEEARKESTTDPLTGLGNRKLFDMMAPRAVQMFSLGRQPVVLLMVD 295

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           +D  K +ND +GH  GD+ I  L++ L  VF      + R GG+EF A    +  + A  
Sbjct: 296 LDKLKLVNDMYGHQAGDQAIQALANALGRVFLRQSDVLCRFGGDEFTAILHNTDWKMAQT 355

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           LA  L++ +        +     I  S G+A+    E +   + RAD+ALY AK++GR+R
Sbjct: 356 LARRLQEQLAGMPAPHPA-MEFSIGASVGVAQLEMHEDVGEWLARADKALYKAKQNGRDR 414

Query: 255 VVC 257
           V  
Sbjct: 415 VCV 417


>gi|220933226|ref|YP_002512125.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994536|gb|ACL71138.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
          Length = 806

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 9/183 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFD 135
             +    + +      ++S  +  D L+GL+N + F   L              +++F D
Sbjct: 348 AALVFRDVTQAREMARKLSWAATHDSLTGLVNRAEFERRLDLLVTTARQEGRGHAVLFMD 407

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D FK +ND  GH  GD+++  L+ +L         + RLGG+EF     G   + A  +
Sbjct: 408 LDQFKLVNDTCGHAAGDELLRQLTRRLQGQLRDNDTLARLGGDEFGVLLEGCPMERAGQI 467

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A  LR  +   +          + +  G+A    H + +++++  AD A Y+AK+ GRNR
Sbjct: 468 AETLRATVAEFRFQWQEKI-YTVGVCIGVAPIDEHIKSVASLMSDADAACYLAKEQGRNR 526

Query: 255 VVC 257
           +  
Sbjct: 527 IHI 529


>gi|168235844|ref|ZP_02660902.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194734043|ref|YP_002114731.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194709545|gb|ACF88766.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197290976|gb|EDY30329.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 660

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSESLIRTADTAMYNAKEGGRGQFC 390

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 391 VFSPEMNQ 398


>gi|332139605|ref|YP_004425343.1| response regulator/GGDEF domain protein [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327549627|gb|AEA96345.1| response regulator/GGDEF domain protein [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 426

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 7/170 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL----SIVFFDIDYFKQINDNFG 147
           E   S   I +++  D L+GL N   F   +   ++KL    ++   D+D+FK IND  G
Sbjct: 246 EYIESVEEIRRVANTDYLTGLPNRRHFFYMVTVQHQKLLENHALALIDLDFFKSINDTHG 305

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD V+  ++  L+  +     + R GGEEF       + + A     D RK++E   
Sbjct: 306 HDAGDIVLKAIA-ALIEFYFPDEIISRFGGEEFCIYMPSITLENACKRLEDFRKVVEAEV 364

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I +     I +T S G++   H + +  ++  AD+ LY AK  GRN+V C
Sbjct: 365 IQLPK-TDIKVTCSIGVS-GTHTQRVDKLLSLADKQLYAAKHDGRNQVKC 412


>gi|329911608|ref|ZP_08275577.1| response regulator containing an adenylate cyclase effector domain
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327545834|gb|EGF30952.1| response regulator containing an adenylate cyclase effector domain
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 320

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 105/240 (43%), Gaps = 22/240 (9%)

Query: 35  FSIFIATVIFIANIFLFYIGLT--PFYGLEYILVENLSLVIISITISLLLGYISGSILKE 92
           F +  A      + +L  + +T  P + +  +    +  ++    +  +L  I   +  E
Sbjct: 70  FKVMDALRHLAQDAWLPVLAITAHPDHKITALEAGAMDFMVKPFVLDEILQRIHKML--E 127

Query: 93  LFISYNR-------ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           + + +N+       +  L+  D L+GL N       L             +++++ D+D 
Sbjct: 128 VRLLFNKATRNSAAMHHLALHDPLTGLPNRRLLDDRLGVALAHAQRGQTMVALMYMDLDG 187

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197
           FK++ND +GH  GD+++  +S +L+        V R+GG+EF       ++ Q+   +A 
Sbjct: 188 FKEVNDTWGHDCGDQLLQLVSQRLLSAARREDTVARIGGDEFILVVGDLATLQDVRAIAQ 247

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +   + +          + IT S G+A      P  ++I  AD ALY AK++G+NR   
Sbjct: 248 KMIDAVAS--PYTLCDTELSITASIGVAL-SGTTPAESLIRLADAALYQAKRNGKNRYHV 304


>gi|299530044|ref|ZP_07043471.1| diguanylate cyclase [Comamonas testosteroni S44]
 gi|298722024|gb|EFI62954.1| diguanylate cyclase [Comamonas testosteroni S44]
          Length = 388

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 59/218 (27%), Positives = 95/218 (43%), Gaps = 13/218 (5%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
           I  +FL +  L       Y LV  L  ++ S+  S L+  +S      +  +   +    
Sbjct: 169 IMVLFLGFTELQDMLSSIYWLVTMLGSLLFSLVFSGLMLIVS------MRDAMATLRDER 222

Query: 105 RIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
             D L+ +LN   F             + LSIV  D+D+FK++NDN+GH  GD V+  ++
Sbjct: 223 NHDMLTRVLNRRGFWELADPLARDRKAQPLSIVVADLDHFKRVNDNWGHEYGDGVLKAVA 282

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + +         V R GGEEF      +  + A  +A  +R         +  G    +T
Sbjct: 283 EVIQASVRGTDLVARFGGEEFVLLLTHADIETAQRVAQRIRAGAVEIIAPLPDGQ--RVT 340

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+        +   + RADQ LY AK+ GR++VV 
Sbjct: 341 LSMGVVVSPFGSDLREALMRADQQLYKAKELGRDQVVV 378


>gi|289648514|ref|ZP_06479857.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. aesculi str. 2250]
          Length = 897

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + +  ++  RI +L+  D L+ L N  AFI +L        +  +S++  DID FK+IN
Sbjct: 454 DITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDERFVRDTDTPMSLLLVDIDNFKRIN 513

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++  L+ +L         + R    EFA     + ++     A+ +   +
Sbjct: 514 DSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLLDNTDQEAGQATASQVLATL 573

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I +T S G+A    H     T++  A  AL+ AK +G+++V  F++  
Sbjct: 574 DKPMF--VDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFTEAL 631

Query: 263 NNTC 266
           N   
Sbjct: 632 NAEA 635


>gi|29142052|ref|NP_805394.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213424416|ref|ZP_03357229.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|29137681|gb|AAO69243.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 660

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF      +S    E  A+ + 
Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRIL 335

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSESLIRTADTAMYNAKEGGRGQFC 390

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 391 VFSPEMNQ 398


>gi|77362279|ref|YP_341853.1| GGDEF domain-containing protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76877190|emb|CAI89407.1| putative GGDEF domain membrane protein [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 306

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 118/237 (49%), Gaps = 16/237 (6%)

Query: 33  IFFSIFIATVIFIANI-----FLFYIGLTPFYGLEYILVENLS-LVIISITISLLLGYIS 86
           +F   F+   ++   +     F+F I L     +  I   +L+    +++ +++L  YI 
Sbjct: 59  VFVWAFVLPTLYYLLLGKNYGFIFSIVLLSLQSIVLINKSSLAPFTSLNLCLNILFAYIV 118

Query: 87  GSILKELFISYN-----RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDY 138
              +   F S       R+ +L+ +D L+G  N  A             +L +   D+DY
Sbjct: 119 IWAISHTFESSRSQFSKRLKKLAMLDPLTGAGNRLAMNHYFSVELRERAQLYLFLVDLDY 178

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQIND +GH VGDKV+  ++  L V F    +V R+GGEEFA  +  +SE  A  +A  
Sbjct: 179 FKQINDKYGHDVGDKVLIEVATLLKVTFAKG-YVFRVGGEEFALISSFNSEHAALAVAEK 237

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +R  +EN  IN+     I++T S G+A    ++ ++ ++  AD+ LY AK  GRN V
Sbjct: 238 VRAALENKYINV-DNYKINLTASIGVANYKPQQSLNELLKAADKQLYKAKDLGRNSV 293


>gi|186686857|ref|YP_001870050.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Nostoc punctiforme PCC 73102]
 gi|186469209|gb|ACC85009.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Nostoc punctiforme PCC 73102]
          Length = 1043

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 85/190 (44%), Gaps = 12/190 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDY 138
            + + E  +   ++   +  D L+GL N   FI  L     +         +++F D+D 
Sbjct: 592 ATDITERKLLEEKLVHNAFYDALTGLPNRILFIDRLEQAIAQMKHNPDDLFAVLFLDLDR 651

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAN 197
           FK +ND+ GH VGD+++  L+ +L         V RLGG+EF        + ++A  +A 
Sbjct: 652 FKVVNDSLGHLVGDQLLVTLAQRLQQCLQPDDTVARLGGDEFTILLSHIQTIEDATDIAK 711

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            + + ++        G  + +T S GIA   +K    + ++  AD ALY AK+  +   +
Sbjct: 712 HIHQALK--PPFNLCGYEVFMTASIGIALGTNKYVQPADLLRDADTALYRAKEQSQAGHI 769

Query: 257 CFSDIENNTC 266
            F     +  
Sbjct: 770 VFDTTMYDRA 779


>gi|330872777|gb|EGH06926.1| response regulator/GGDEF domain-containing protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 334

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+GL N   F   L            +LS++  D+DYFK  N
Sbjct: 156 QQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRATRDQAQLSLLMIDVDYFKAYN 215

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DNFGH  GD+ +  ++  +            R GGEEFA     +S   A +LA  LR+ 
Sbjct: 216 DNFGHLEGDEALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQS 275

Query: 203 IENSQI-NISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257
           +    I +I+  P   +T+S G+A            +I  AD+ LY+AK +GRN+V  
Sbjct: 276 VAGMNIPHIAPVPGSSLTVSIGVATVTPQVGRHSRQLILDADKGLYLAKNNGRNQVAA 333


>gi|319765013|ref|YP_004128950.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|330827208|ref|YP_004390511.1| diguanylate cyclase [Alicycliphilus denitrificans K601]
 gi|317119574|gb|ADV02063.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|329312580|gb|AEB86995.1| diguanylate cyclase [Alicycliphilus denitrificans K601]
          Length = 377

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 71/255 (27%), Positives = 111/255 (43%), Gaps = 25/255 (9%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL------- 80
           M+ F          V   A I L  I   P +  +  L  +L L ++++ + L       
Sbjct: 114 MVVFHGARGGVRLVVSMAAGIALAAITALPSWHPDTDLRTSL-LCMLALGLYLFAFARDG 172

Query: 81  ----LLGYISGSILK----ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SY 125
               +  Y   + L+    E+     ++ + +  D L+GL N     ++L          
Sbjct: 173 YDRAMAQYQVHAQLRGQFDEIRSLQAQLREQALRDPLTGLFNRRQLDAALAPALRRCREQ 232

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              LS++  DID+FK+IND  GH  GD V+  L+  L+          RLGGEEF     
Sbjct: 233 GTPLSVLLIDIDHFKRINDAHGHAAGDMVLQALARLLLRHARPQDLACRLGGEEFLLVLD 292

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
                 A   A +LR+  E  ++  S G  +  T+S G+A    H +    ++  ADQAL
Sbjct: 293 DMPVAAAIERAQELRQAFEALRVR-SEGEELAATLSCGVAAFPQHADQPQALLACADQAL 351

Query: 245 YVAKKSGRNRVVCFS 259
           Y AK+ GRNRVV ++
Sbjct: 352 YTAKEQGRNRVVMWA 366


>gi|296284370|ref|ZP_06862368.1| sensory box/GGDEF family protein [Citromicrobium bathyomarinum
           JL354]
          Length = 785

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 86/176 (48%), Gaps = 11/176 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
           GS + E   S  +I+ L+R D L+GL N      SLG        +  + + +  D+D F
Sbjct: 340 GSDVTEQRKSSEKIAYLARYDTLTGLPNRLMLNESLGEAMDEARQWRRRCAFIMLDLDRF 399

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND+ GH +GD+++  +S +L  + G     GRLGG+EFA     + +  A       
Sbjct: 400 KAVNDSLGHQIGDRLLEQVSRRLSELTGENEICGRLGGDEFAIVMRDAPDSCAVDALA-- 457

Query: 200 RKIIEN-SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           RK+IE  SQ       ++ +  SAG A      + +  ++  AD ALY AK  GR 
Sbjct: 458 RKVIERLSQPYEVDQHTLFVGASAGSALAPRDGKTVEELMRNADLALYRAKDGGRG 513


>gi|297570048|ref|YP_003691392.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925963|gb|ADH86773.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2]
          Length = 285

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 65/237 (27%), Positives = 101/237 (42%), Gaps = 18/237 (7%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101
           V ++  +FL         G++ I    L    I + +  LL   +   LK +      + 
Sbjct: 51  VSYLVYVFLQQSRTGELSGVDLIAPFILFFGAIFVLLVNLLSLKTTLELKRICT----LE 106

Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           Q +  D L G+ N       L             LSI+  DID+FK++ND  GH  GD+ 
Sbjct: 107 QENITDPLLGIYNRRYLEEMLELEFRLSRRDGLPLSILLLDIDHFKEVNDKHGHLAGDRT 166

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK------IIENSQI 208
           +  L  ++         + R GGEE       + E  A ++A  +R+      ++   + 
Sbjct: 167 LLNLVQEIKGNLRETDQLARYGGEEILIMLPHTPEDGAKLVAEKIRRGIAGGIMVAAGER 226

Query: 209 NISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
                P I IT+S G+A  R        +  +ADQALY AKK+GRNR V  S++E  
Sbjct: 227 EDEGWPDISITVSIGVAGLRDEFSSGKELFAKADQALYRAKKTGRNRCVAASELEQK 283


>gi|160874994|ref|YP_001554310.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160860516|gb|ABX49050.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|315267226|gb|ADT94079.1| diguanylate cyclase [Shewanella baltica OS678]
          Length = 341

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 95/209 (45%), Gaps = 12/209 (5%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKE------LFISYNRISQLSRIDCLSGL 112
           + +E +L    SLV  S  I     + +G + K       L     +  +    D L+G 
Sbjct: 128 FSVEQVLDLVRSLVKESDNIRSSTEFFTGQLQKAQTEIDALKKKLEQTEKDVLYDALTGC 187

Query: 113 LNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N  AF S     L        ++  DID+FK  ND +GH +GD+V+  ++ +L      
Sbjct: 188 FNRRAFDSDFAGMLAQAPLGTCVILADIDHFKVFNDTYGHQLGDQVLRAVAKRLQESCRD 247

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITISAGIAE 226
              + R GGEEF      S  + A  LA  +R+ +E   + +      I +I+ S G+A+
Sbjct: 248 GAKLYRFGGEEFVIIVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDERINNISASFGVAQ 307

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRV 255
              K+    +I  AD+ LY AK+ GRNRV
Sbjct: 308 WQEKQTGMQLIEAADKLLYDAKRLGRNRV 336


>gi|121998140|ref|YP_001002927.1| diguanylate cyclase [Halorhodospira halophila SL1]
 gi|121589545|gb|ABM62125.1| diguanylate cyclase [Halorhodospira halophila SL1]
          Length = 412

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 114/266 (42%), Gaps = 41/266 (15%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIG-------------LTPFYGLEYILVEN 68
           F P     + S+     +  V+ +A +  + +              +T   GLE  L+ +
Sbjct: 152 FLPAAVSSWSSLPDQGLLLGVLAVAGLLSWALLHPNPPHIGAFSALVTATVGLELSLMRH 211

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
            SLV+ ++   + L  +  ++L+E         +++  D L+GL N  A  +     + +
Sbjct: 212 GSLVLPTLLAVVALHLLLFAVLQE-------AHRMAFRDGLTGLPNRRAMDTLTQGLSGR 264

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
            +I   DID+FK  ND +GH +GD+V+  ++  +  V G      R GGEEF+    G S
Sbjct: 265 YTIAMMDIDHFKAFNDTYGHEIGDQVLRRVASNIGRV-GAGGRPFRYGGEEFSVVFPGRS 323

Query: 189 EQEAAILANDLRKIIENSQINISSG-------------------PSIHITISAGIAERCH 229
             EA      +R+ I ++   + S                        ITIS G+AE   
Sbjct: 324 PDEAVGALEAVRQAIADTPFRLRSADRPADDKRGSRERSGQRGEQETRITISIGVAEPES 383

Query: 230 -KEPISTIIYRADQALYVAKKSGRNR 254
                  ++  ADQALY AKK GRNR
Sbjct: 384 TSASADDVVQAADQALYRAKKGGRNR 409


>gi|150389362|ref|YP_001319411.1| diguanylate cyclase [Alkaliphilus metalliredigens QYMF]
 gi|149949224|gb|ABR47752.1| diguanylate cyclase [Alkaliphilus metalliredigens QYMF]
          Length = 381

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 16/244 (6%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFL----FYIGLTPFYGLEYILVENLSLV-IISITISL 80
             +I  +++ +    T + + + FL    F        G+E  +   L L  +I I    
Sbjct: 127 VMVITLAVYITPNKLTCVQLISTFLSLSFFIFHAKHIEGMETSVFLKLVLYNLIIIIYCN 186

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVF 133
           +  Y++G   ++ F+    + ++S  D L+G+ N   F   L         Y   LS V 
Sbjct: 187 IGAYMTGFYKRKQFVDSRELLRVSITDPLTGIYNRGKFNEELNRWIDYCNRYENALSFVM 246

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID FK++ND +GH +GD+VI  +   +           R GGEEF      +   +A 
Sbjct: 247 LDIDDFKRVNDGYGHLIGDRVIQNIVLTIKKGIRNTDIFARWGGEEFVILLPNTDTDQAM 306

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            +   +R  I+N++ +       +IT S G+      E   +++ RAD+ LY AK  G+N
Sbjct: 307 EMMERMRVCIQNTKHDKVE----NITCSFGLVALRKSENAESLLQRADKLLYDAKNCGKN 362

Query: 254 RVVC 257
            V+C
Sbjct: 363 AVIC 366


>gi|325523546|gb|EGD01852.1| signal transduction GGDEF/EAL domain protein [Burkholderia sp.
           TJI49]
          Length = 745

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 101/208 (48%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVIIS-ITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +Y    N+ L++ S IT+++L  + ++  ++ +L      ++QL+  D L+GL N  A +
Sbjct: 258 DYYHTRNVYLLMTSFITLAMLAFFGVATGLIGKLLGREREMTQLAEYDLLTGLANRYATL 317

Query: 120 SSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
             L       +   +L ++F D+D FK +ND  GH  GD V+   + +L    G    + 
Sbjct: 318 RGLRNDVSAPASLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTASRLSDAVGDEGTLA 377

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EF     G   E+ A  LA  + ++    +     G S  +  S GIA      E
Sbjct: 378 RIGGDEFVVVMKGDDVERRAVRLAEAIIRMF--GEPFDVRGSSFVLHASIGIALHTVANE 435

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +AD A+Y AK +G+N    ++
Sbjct: 436 SEIDLLKKADLAMYSAKDAGKNCYQFYA 463


>gi|188997382|ref|YP_001931633.1| diguanylate cyclase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932449|gb|ACD67079.1| diguanylate cyclase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 411

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 8/159 (5%)

Query: 106 IDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           ID L+G  N   F   +    E        +++   D+DYFK+IND FGH  GD+ +   
Sbjct: 254 IDPLTGAFNRRGFEIIIQKLLEISQITDAPITLAMADLDYFKKINDTFGHLAGDEALKHF 313

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
            + +        +V R+GGEEF      +  ++A  +   +RK +E + ++   G  I I
Sbjct: 314 VNIIKRNLRKSDYVFRIGGEEFLILLPNTELKDAVEIVERIRKDLEENSLHY-DGKEIKI 372

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           T S G+AE   ++ I+ II +AD+ LY AK+SGRN+VV 
Sbjct: 373 TASFGLAEVDKEKYINEIIKKADEKLYKAKESGRNKVVV 411


>gi|332993899|gb|AEF03954.1| diguanylate cyclase/phosphodiesterase [Alteromonas sp. SN2]
          Length = 701

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 125/291 (42%), Gaps = 34/291 (11%)

Query: 2   TRSLKDFLSIWLCHEKNL----ESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTP 57
           ++S   FL +++  +  L    +S   +   + F ++    I T+ FI+ +F     L+ 
Sbjct: 146 SQSPDGFLILFVDAKAPLTGSVKSLLLNVVPLIFVLWVISIIGTLFFISRVFRPLSELSF 205

Query: 58  F---------YGLEYILV---------ENLSLVIISITISLLLGYISGSILKELFISYNR 99
           F         Y L   L          EN++L++  I + LL+ +        L      
Sbjct: 206 FTKQVTDTKDYALRQNLTSRDEIGELGENINLLLEMIEVELLINHEQTQT---LVNQQET 262

Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +L+  D L+GL N           ++     ++ L+++FFD+D FK IND+ GH  GD
Sbjct: 263 MIRLANYDSLTGLPNRQFVLDNLRLELARARRNDDDLALLFFDLDGFKGINDSLGHETGD 322

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            ++  ++D++  +      V RLGG+EF          +  +    +R I   +      
Sbjct: 323 LILIEVADRVSALLREGDLVARLGGDEF-LVLPDRETGDTTLENMAIRLIDAFTSPFELR 381

Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           G S+ + +S G+A     +  +S ++  AD A+Y +K  GR     F+   
Sbjct: 382 GLSLSVGVSVGVARAIDADYDLSELMSNADLAMYRSKAKGRGSFTIFTPDM 432


>gi|327188359|gb|EGE55576.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 783

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 14/184 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           + + EL  S +R  + +  D L+GLLN   F       I++  +  ++L+ +F D+D FK
Sbjct: 332 TDVTELKASEDRNHRQAITDHLTGLLNRQGFEAVLDSKIAAADAAGQELACLFVDLDRFK 391

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
            INDN GH  GDK +  L ++L           RLGG+EFA        E+ A  +   +
Sbjct: 392 WINDNMGHAAGDKALIELVERLKTHLAPSDEAARLGGDEFAILLPAKDAERRAKAMCEQI 451

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             I E         P +H++ S GIA    H    + ++ ++D A+Y  K+ G+N    F
Sbjct: 452 ASIFET-----PFAPDMHLSASIGIAIYPHHAATAAELLQKSDMAMYAKKRDGKNGAQLF 506

Query: 259 SDIE 262
            ++ 
Sbjct: 507 DNVM 510


>gi|266621765|ref|ZP_06114700.1| putative GGDEF domain protein [Clostridium hathewayi DSM 13479]
 gi|288866561|gb|EFC98859.1| putative GGDEF domain protein [Clostridium hathewayi DSM 13479]
          Length = 896

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 90/181 (49%), Gaps = 12/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQ 141
           + +        R+ +L+  D L+GL N  A  + +  Y      +++  ++  D+D FK+
Sbjct: 405 ADIDREKREKERLLELAEQDSLTGLYNRGAVQTLIQRYVVKARPSDRCVLMILDVDNFKK 464

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND +GH  GD ++  ++D L  +F     + R+GG+EFA       + +EAA  A+ + 
Sbjct: 465 VNDIYGHLSGDAMLVDIADMLRRLFPENAVLARVGGDEFAVLLYHVKTMEEAAEKADQIL 524

Query: 201 KIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           K   +    I    +  I+ S GI+      +  ++I   AD ALY AK+ G+NR   ++
Sbjct: 525 KSFRS----ILKQQNDMISCSIGISTAPENGDNFASIYKNADAALYQAKRQGKNRYAFYA 580

Query: 260 D 260
           +
Sbjct: 581 E 581


>gi|261212231|ref|ZP_05926517.1| C-di-GMP phosphodiesterase A-related protein [Vibrio sp. RC341]
 gi|260838839|gb|EEX65490.1| C-di-GMP phosphodiesterase A-related protein [Vibrio sp. RC341]
          Length = 685

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 10/190 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           L     S+ K   ++ ++++QL+  D L+GL N S  +  L        + +   ++ + 
Sbjct: 220 LASTFQSMWKGKELAESKLNQLAYYDSLTGLANRSLLLQKLSDAITTAQNAHTTGALFYL 279

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND+ GH +GD++I  ++ ++           R+GG+EF       S  +A  
Sbjct: 280 DLDRFKTINDSLGHTIGDQLIKAVALRMDAWTKNDYLSARIGGDEFVVLIPYLSPNKAEE 339

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRN 253
           +A  L  +I N          ++ T+S GI+           ++ +AD ALY AK SGRN
Sbjct: 340 VAKQLLTLISN--PYTVDDHQLYCTVSIGISIFPSVGISNIDVLRQADTALYRAKASGRN 397

Query: 254 RVVCFSDIEN 263
           + + +     
Sbjct: 398 KFMFYEPEMQ 407


>gi|254718428|ref|ZP_05180239.1| diguanylate cyclase GGDEF domain-containing protein [Brucella sp.
           83/13]
 gi|306838854|ref|ZP_07471684.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653]
 gi|306406052|gb|EFM62301.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653]
          Length = 703

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFF 134
           L+G +    + E      R++ ++  D L+GL N + F   +GS  +        ++ + 
Sbjct: 249 LIGLV--EDITERREIEKRMAHIAMHDSLTGLPNRAYFAHHVGSLLKQGSDCDPFALFYL 306

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK +ND+  H  GD+++  +  +L  +     F+ RLGG+EFA      +  + A+
Sbjct: 307 DIDHFKNVNDSISHQAGDQLLQEVVLRLRQITTADQFIARLGGDEFAIVYRSGTLAQIAM 366

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
            A+ +    ++    +  G +  +T S GIA+   H +    ++  AD ALY +K  GR 
Sbjct: 367 FADRVLSAFQD--PFVLGGNAEFVTCSMGIAQAPLHGDNPDVLMRNADLALYASKSGGRR 424

Query: 254 RVVCFSD 260
               + D
Sbjct: 425 TFRFYQD 431


>gi|223984933|ref|ZP_03635036.1| hypothetical protein HOLDEFILI_02338 [Holdemania filiformis DSM
           12042]
 gi|223963102|gb|EEF67511.1| hypothetical protein HOLDEFILI_02338 [Holdemania filiformis DSM
           12042]
          Length = 838

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 11/180 (6%)

Query: 84  YISGSI--LKELFISYNRISQLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFDID 137
           Y+ G +  + E      R+   +  D L+ +LN         + L +  +  +++  DID
Sbjct: 649 YVIGRLNNIDEQVKEKERLRLKAERDSLTHILNAETSRKQVEAELEARPQAGALILLDID 708

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK++ND +GH  GD+V+  ++  L  VF +   VGR GG+EF      S  +       
Sbjct: 709 HFKEVNDTYGHWAGDQVLGQVAQLLQEVF-SGEIVGRPGGDEFLVYIRQSEPENVRQRCE 767

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           DLR+ I+  +++ +      ++ISAG A         T+  +AD+ALY AK+ GRN++V 
Sbjct: 768 DLRRRIQEIRLSATE----RLSISAGCAGASADSTFETLYQQADKALYQAKEKGRNQIVY 823


>gi|254521982|ref|ZP_05134037.1| diguanylate cyclase [Stenotrophomonas sp. SKA14]
 gi|219719573|gb|EED38098.1| diguanylate cyclase [Stenotrophomonas sp. SKA14]
          Length = 512

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 59/218 (27%), Positives = 91/218 (41%), Gaps = 10/218 (4%)

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCL 109
           LF  GL     +  ++     L  +     L     +     E      R++  +  D L
Sbjct: 275 LFEAGLNSPSRVRELIDHAQELATLRNLRELQDADQARRRADEFEARAKRLADQAHRDAL 334

Query: 110 SGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +G+LN     +         G     LS+ F D+D FK+IND  GH  GD+V+   + +L
Sbjct: 335 TGVLNRRQLEAVLEQEFLRAGRQGWPLSVAFIDLDDFKKINDAHGHLTGDEVLRAFAGKL 394

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                    V R GGEEF A    +SE  A  +   +   I  + +    G  + +T SA
Sbjct: 395 QGQLRNSDTVARFGGEEFVALLPNTSETVALDVIRRVLANIVATPMAELEGGPLFVTFSA 454

Query: 223 GIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVC 257
           G+A +   E    +  ++  AD  LY +K  GRNRV+ 
Sbjct: 455 GVATQGGYERFADVQDLLRAADDVLYRSKNLGRNRVIA 492


>gi|213647977|ref|ZP_03378030.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 663

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF      +S    E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSESLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 394 VFSPEMNQ 401


>gi|90406947|ref|ZP_01215138.1| GGDEF family protein [Psychromonas sp. CNPT3]
 gi|90311989|gb|EAS40083.1| GGDEF family protein [Psychromonas sp. CNPT3]
          Length = 339

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 6/169 (3%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGH 148
           L  +  +  + +  D L+GLLN  AF + L ++       L ++  DID+FK+ ND +GH
Sbjct: 168 LKKALEKSQRQALYDSLTGLLNRYAFDTELSTFLSTKADGLCLILADIDHFKKFNDQWGH 227

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+V+  +  +            R GGEEF      ++ + A   A  LR++IE   +
Sbjct: 228 LLGDQVLKAVGRKFNESMRDGTTAYRFGGEEFVILLPKTNLRLARHFAESLRRLIEKLNL 287

Query: 209 -NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  SG  I +I+ S G+ E    E +++ I RAD  LY AK+ GRNRV
Sbjct: 288 KDKRSGQMIDNISASFGVVEFQKGESLTSFIARADTFLYEAKRLGRNRV 336


>gi|332139975|ref|YP_004425713.1| Signaling protein with a acyltransferase and GGDEF domains
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549997|gb|AEA96715.1| Signaling protein with a acyltransferase and GGDEF domains
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 632

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 11/177 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L+EL      + +L+ ID L+G  N   F   L S           LS+V  D+D+FK+I
Sbjct: 449 LRELSEVNQELERLNAIDPLTGAHNRRHFDKRLRSEGRRSRREQTPLSLVIIDVDHFKKI 508

Query: 143 NDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD+ +  ++      +      + R+GGEEFA     +  + A  +A ++R 
Sbjct: 509 NDEYGHDGGDECLIHVTKVFQQHIHRPTDDLCRIGGEEFAIILPNTDLEGAFHVAENMRS 568

Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +E S +   +   I++T SAG++      ++    +    D+ LY AK +GRN+V+
Sbjct: 569 SLEASPLEYEN-EMINLTASAGVSTTVIVGEDHTQQLFKFTDELLYEAKAAGRNKVI 624


>gi|15643732|ref|NP_228780.1| hypothetical protein TM0972 [Thermotoga maritima MSB8]
 gi|222100579|ref|YP_002535147.1| Sensory box histidine kinase [Thermotoga neapolitana DSM 4359]
 gi|4981511|gb|AAD36051.1|AE001760_1 conserved hypothetical protein, GGDEF domain [Thermotoga maritima
           MSB8]
 gi|221572969|gb|ACM23781.1| Sensory box histidine kinase [Thermotoga neapolitana DSM 4359]
          Length = 422

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 109/238 (45%), Gaps = 16/238 (6%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYG----LEYILVENLSLVIISITISLLLGY 84
           I  S F    +A VI      L +   +  YG    L ++      +VI+   I   L  
Sbjct: 189 ISISTFRKPLVAAVILTIFGELSFTLYSDVYGFFNFLGHVFRFLSYMVILRGMIVNALAN 248

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
              ++L EL     ++ +++  D L+GL N + F   +          N  LS +  D+D
Sbjct: 249 PVRALLFELHEEKEKLKEIAHRDSLTGLFNRAFFNEWIQDQVRKAQFQNVPLSFIMIDVD 308

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FKQIND +GH  GDKV+ F++  +     +  F  R GG+EF      +S+Q+A  +A+
Sbjct: 309 DFKQINDTYGHLTGDKVLKFVARCISDSIRSSDFAVRYGGDEFLVVLYNTSKQQAERVAS 368

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +R+ I N     S+   + + IS G+AE    +     + +AD+ +Y  K+  ++  
Sbjct: 369 RIREKIRN-----SNELGVDVDISYGVAELNPGDNYLKFLQKADEEMYGMKREKKSCC 421


>gi|300696801|ref|YP_003747462.1| signal transduction eal-ggdef domains transmembrane protein
           [Ralstonia solanacearum CFBP2957]
 gi|299073525|emb|CBJ53045.1| putative signal transduction eal-ggdef domains transmembrane
           protein [Ralstonia solanacearum CFBP2957]
          Length = 1178

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 22/187 (11%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQ 141
            + E  ++  R++Q + +D L+GL N +                  +  +   +ID FK 
Sbjct: 737 DVTEQEMTRARLAQHATVDPLTGLPNRTLLADRVQQAVEMAARQRSRFYVALINIDRFKV 796

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA----AILAN 197
           +ND+ GH +GD+V+  ++++L     T   V R GG+ FA     +          + A 
Sbjct: 797 VNDSLGHLLGDEVLRRIAERLRDAADTVDTVARFGGDVFALVISHAGSHGVDLGFDLFAE 856

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +R            G  + +T S G+AE   H     T++  A+ A+Y AK++GRNR+ 
Sbjct: 857 PIR----------VEGHEVFVTASIGVAEYPAHGTDSETLVRHAEMAMYYAKQNGRNRLE 906

Query: 257 CFSDIEN 263
            F+   +
Sbjct: 907 FFAPEMD 913


>gi|224823771|ref|ZP_03696880.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
 gi|224604226|gb|EEG10400.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
          Length = 953

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 16/211 (7%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRI-----SQLSRIDCLSGLLNHSAFISS 121
             +S+ ++S  I    G +SG +L    ++  R+     S  +  D L+GL N   F   
Sbjct: 461 SRVSVCMVSAPIFDSQGGVSGKVLVFHDMTRERLYIESLSWQASHDALTGLTNRHEFERR 520

Query: 122 LGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L           +   +++ D+D FK +ND  GH  GD+++  +   L         + R
Sbjct: 521 LTRLLEATVGRQQYHVLMYLDLDQFKVVNDTCGHAAGDELLRQVCVLLSQQLREGDTLAR 580

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI 233
           LGG+EF         + A  +A  LR+ + +   +  +G    I+ S G+         +
Sbjct: 581 LGGDEFGVLLQNCPPEAALPVAEKLRQTVCDLHFSW-NGQPFAISASIGVVHISGVPTTL 639

Query: 234 STIIYRADQALYVAKKSGRNRVVCF--SDIE 262
             ++  AD A Y+AK+ GRNR   +   D E
Sbjct: 640 KEVMRAADVACYMAKEKGRNRAQLYAADDAE 670


>gi|16760177|ref|NP_455794.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|25318946|pir||AI0655 conserved hypothetical protein STY1349 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502472|emb|CAD01618.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 660

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF      +S    E  A+ + 
Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRIL 335

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSESLIRTADTAMYNAKEGGRGQFC 390

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 391 VFSPEMNQ 398


>gi|266620868|ref|ZP_06113803.1| GGDEF/response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
 gi|288867447|gb|EFC99745.1| GGDEF/response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
          Length = 379

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 119/288 (41%), Gaps = 35/288 (12%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSI----FI----ATVIFIANIFLFYIGLT 56
              F+  W C     +    +   ++     S+    F+    A VIF++      + L 
Sbjct: 94  YAAFICFWGCCVTLNDQLGGNDLSVFTYTMLSVAALGFLEPVKAVVIFMSAFVFLNLCLP 153

Query: 57  PFYGLEYILVENL----SLVIISITISLLLGYISGSILKELFISYNR-----------IS 101
               +E  +  N+    S+  IS  IS  L Y +  I+ +  ++  +           +S
Sbjct: 154 GIQTIENNMFSNIINSFSIAGISTAISYTL-YRNKVIVTKQEMTIRKQYEEITRVNEILS 212

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           + + +D L+ + N           I  L      +S +  DIDYFKQ ND +GH  GD  
Sbjct: 213 RQAMVDELTEMNNRRYMEWFIGEKIKILEEKTGTISCMMLDIDYFKQFNDRYGHISGDIC 272

Query: 155 IAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           +  +++ +            R GGEEF       ++ EA  +A  +RK I   +  I+  
Sbjct: 273 LKKIAEMIRECCQDQNVAAIRYGGEEFFICLFQWNQDEAVEMAEKIRKRIAECRFKINE- 331

Query: 214 PSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCFS 259
               +TIS G+     +  +    +I  +D+ALY AKK+GRNRV   S
Sbjct: 332 EEGAVTISIGVYTWHGEGKVQMDDLIRLSDKALYQAKKNGRNRVEVLS 379


>gi|265983393|ref|ZP_06096128.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella sp. 83/13]
 gi|264661985|gb|EEZ32246.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella sp. 83/13]
          Length = 709

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFF 134
           L+G +    + E      R++ ++  D L+GL N + F   +GS  +        ++ + 
Sbjct: 255 LIGLV--EDITERREIEKRMAHIAMHDSLTGLPNRAYFAHHVGSLLKQGSDCDPFALFYL 312

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK +ND+  H  GD+++  +  +L  +     F+ RLGG+EFA      +  + A+
Sbjct: 313 DIDHFKNVNDSISHQAGDQLLQEVVLRLRQITTADQFIARLGGDEFAIVYRSGTLAQIAM 372

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
            A+ +    ++    +  G +  +T S GIA+   H +    ++  AD ALY +K  GR 
Sbjct: 373 FADRVLSAFQD--PFVLGGNAEFVTCSMGIAQAPLHGDNPDVLMRNADLALYASKSGGRR 430

Query: 254 RVVCFSD 260
               + D
Sbjct: 431 TFRFYQD 437


>gi|261418187|ref|YP_003251869.1| diguanylate cyclase [Geobacillus sp. Y412MC61]
 gi|319767853|ref|YP_004133354.1| diguanylate cyclase [Geobacillus sp. Y412MC52]
 gi|261374644|gb|ACX77387.1| diguanylate cyclase [Geobacillus sp. Y412MC61]
 gi|317112719|gb|ADU95211.1| diguanylate cyclase [Geobacillus sp. Y412MC52]
          Length = 619

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 12/169 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
              + +L   D L+ L         +      +   + +  DID FKQIND +GH  GD+
Sbjct: 452 REELEKLVVTDYLTKLHTRRYLDERIQQSMGTDASGAFILLDIDNFKQINDVYGHQTGDE 511

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  +++ +           R GGEE A          A  +A  + + +    I     
Sbjct: 512 VLVQVAETMRANIRDGDVAARWGGEELAVYLPNVPLSYAVAVARRIMEKVREQTIPA--- 568

Query: 214 PSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
               +T+S GI+   H   +    +  RAD ALY+AK+ G+N +    D
Sbjct: 569 ----VTVSCGISWWGHGGFQDAEQLFKRADAALYMAKEMGKNCIFVHDD 613


>gi|218778804|ref|YP_002430122.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760188|gb|ACL02654.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 415

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 82/173 (47%), Gaps = 9/173 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           +L      +  LS  D L+GL N   F         S      K+++   DIDYFK++ND
Sbjct: 244 DLLDYIQEVKDLSSKDFLTGLYNRRYFFDLGKKIHASALREKTKIAVATVDIDYFKRVND 303

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD VI  +S+ L         V R GGEEF       +  ++  L   +R+ I+
Sbjct: 304 THGHDVGDLVIQSVSNILANACRETDIVSRFGGEEFCILTPNITPADSLKLFERVRQTIQ 363

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S I +  G  I +T S G+     K  +  +I R+DQ LY AK  GRN+V  
Sbjct: 364 DSVIQV-QGADIRVTASIGVCSTLLK-TLDDMIVRSDQMLYRAKNQGRNKVQI 414


>gi|118588446|ref|ZP_01545855.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Stappia
           aggregata IAM 12614]
 gi|118439152|gb|EAV45784.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Stappia
           aggregata IAM 12614]
          Length = 723

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 12/179 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
               + L  +   + +++ ID L+ +LN  AF+                 + V  DID F
Sbjct: 535 QRDHQALMNAKINLERVASIDDLTQILNRRAFLERANTEVQRFRRTKRPFTAVMMDIDKF 594

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQIND +GH  GD+V+   +D +     +    GR+GGEEF      +  ++A ++   L
Sbjct: 595 KQINDLYGHATGDEVLRKFADTVSSALRSVDIFGRVGGEEFCMILHNADLEDAMLVCERL 654

Query: 200 R-KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
           R +II   Q++I       +T S G+A    ++   ST++ +AD ALY AK +GRN+ V
Sbjct: 655 RQRIIAECQLDIVKQ---TVTCSMGLAAVAREDLEFSTLMQKADTALYEAKSTGRNKCV 710


>gi|89902416|ref|YP_524887.1| PAS/PAC sensor-containing diguanylate cyclase [Rhodoferax
           ferrireducens T118]
 gi|89347153|gb|ABD71356.1| diguanylate cyclase with PAS/PAC sensor [Rhodoferax ferrireducens
           T118]
          Length = 652

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 21/203 (10%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136
           ++    +       ++I QL+  D L+ L N       L              +++F D+
Sbjct: 446 HVCIRDISTRKQMEDQIRQLAFFDHLTLLPNRRLLTDRLSQAVAASKRSSCFAALLFLDL 505

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE------Q 190
           D FK +ND  GH VGD ++   + +L+        V R GG+EF               +
Sbjct: 506 DNFKPLNDQHGHAVGDLLLMEAAARLMNCVRGVDTVARFGGDEFVVLLTELDARHAESTE 565

Query: 191 EAAILANDLRKIIE-------NSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQ 242
           +AAI+A  +R  +         ++  +++    H TIS G +  R  +     ++  AD 
Sbjct: 566 QAAIVAEKIRTSLSIPYQLTVKTKEQVATRIEHHCTISVGAVVFRGPESDPDDVLKWADT 625

Query: 243 ALYVAKKSGRNRVVCFSDIENNT 265
           A+Y AK++GRN +  ++  E  T
Sbjct: 626 AMYQAKQAGRNSIRFYASTEQAT 648


>gi|71733928|ref|YP_276900.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|257482970|ref|ZP_05637011.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|71554481|gb|AAZ33692.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|320326351|gb|EFW82404.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320331657|gb|EFW87595.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330891357|gb|EGH24018.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
           pv. mori str. 301020]
 gi|330985928|gb|EGH84031.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
           pv. lachrymans str. M301315]
 gi|331011788|gb|EGH91844.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 897

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + +  ++  RI +L+  D L+ L N  AFI +L        +  +S++  DID FK+IN
Sbjct: 454 DITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDERFVRDTDTPMSLLLVDIDNFKRIN 513

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++  L+ +L         + R    EFA     + ++     A+ +   +
Sbjct: 514 DSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLLDNTDQEAGQATASQVLATL 573

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I +T S G+A    H     T++  A  AL+ AK +G+++V  F++  
Sbjct: 574 DKPMF--VDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFTEAL 631

Query: 263 NNTC 266
           N   
Sbjct: 632 NAEA 635


>gi|85710042|ref|ZP_01041107.1| putative diguanylate cyclase (GGDEF) [Erythrobacter sp. NAP1]
 gi|85688752|gb|EAQ28756.1| putative diguanylate cyclase (GGDEF) [Erythrobacter sp. NAP1]
          Length = 588

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 66/236 (27%), Positives = 100/236 (42%), Gaps = 13/236 (5%)

Query: 32  SIFFSIFIATVIFIANIFLFYIGLTPFYG---LEYILVENLSLVIISITISLLLGYISGS 88
           S  F  F  + I ++++     GL  + G   L+  L   + L +I I++++   +++  
Sbjct: 329 SARFLAFAWSPIILSSLERMMRGLGVYAGPSQLDQTLYLAVGLEVIVISLAIASRFLAIR 388

Query: 89  ILKELFISYNRI-SQLSRIDCLSGLLNHSAFISSLGSYNEKL--SIVFFDIDYFKQINDN 145
             ++  ++   +  QLS  D L+GL+N  A          +   +    D+D+FK IND 
Sbjct: 389 RERDAAVTEAELLEQLSTHDPLTGLMNRRAVEERFADLQAQGFDTFALIDLDHFKAINDR 448

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH VGDK +      L           RLGGEEF     G   + A   A  LR+ I  
Sbjct: 449 FGHQVGDKALVACGHALRGNDERDSIAVRLGGEEFVVLLRG---KGALERAEALRQSITV 505

Query: 206 SQINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVVC 257
                  G    +T S G+ E             +  RADQ LY AK +GRNR   
Sbjct: 506 RIARDVEGLERPVTASMGVIELPRASDQLMGFDELYSRADQLLYNAKAAGRNRTCF 561


>gi|307825097|ref|ZP_07655318.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307733845|gb|EFO04701.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 741

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 12/190 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           + +     S   I QL+  D L+ L N    +  L           +  +++F D+D FK
Sbjct: 296 TDISTRKASEEVIKQLAYYDPLTALPNRRLLMDRLQQALAASARSKKYGALLFIDLDNFK 355

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG--SSEQEAAILAND 198
            +ND+ GH +GD ++  ++ +L+        V R GG+EF         S +EAA  A  
Sbjct: 356 SLNDHLGHDMGDVLLQQVAQRLIDCVREGDTVSRQGGDEFIVMLEDLSGSTEEAAAKAKT 415

Query: 199 LRKII--ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
           + + I    +Q    +      T S GI     H+  I+ ++ RAD A+Y AK +GRN +
Sbjct: 416 IGEKIITSLNQAYQLTSHEYRNTPSIGITLFINHQHEINMLLKRADIAMYGAKAAGRNTL 475

Query: 256 VCFSDIENNT 265
             F       
Sbjct: 476 RFFDQNMQEA 485


>gi|289672478|ref|ZP_06493368.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 561

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + +  ++  RI +L+  D L+ L N  AFI +L        +  +S++  DID FK+IN
Sbjct: 118 DITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDERFARDTDTPMSLLLVDIDNFKRIN 177

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++  L+ +L         + R    EFA     + ++     A  +   +
Sbjct: 178 DSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLIDNTDQEAGQATATQVLATL 237

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I +T S G+A    H     T++  A  AL+ AK +G+++V  F++  
Sbjct: 238 DKPMF--VDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFTEAL 295

Query: 263 NNTC 266
           N   
Sbjct: 296 NAEA 299


>gi|289624674|ref|ZP_06457628.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|330871114|gb|EGH05823.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 897

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + +  ++  RI +L+  D L+ L N  AFI +L        +  +S++  DID FK+IN
Sbjct: 454 DITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDERFVRDTDTPMSLLLVDIDNFKRIN 513

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++  L+ +L         + R    EFA     + ++     A+ +   +
Sbjct: 514 DSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLLDNTDQEAGQATASQVLATL 573

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I +T S G+A    H     T++  A  AL+ AK +G+++V  F++  
Sbjct: 574 DKPMF--VDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFTEAL 631

Query: 263 NNTC 266
           N   
Sbjct: 632 NAEA 635


>gi|121592439|ref|YP_984335.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acidovorax sp. JS42]
 gi|120604519|gb|ABM40259.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax sp. JS42]
          Length = 669

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 16/185 (8%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDN 145
                  I +L+  D L+ L N    +              +  +++F D+D FK +ND 
Sbjct: 219 RKHQEREIQRLAFFDPLTHLPNRVQLLDRVDQALAKAQRLEQGGALLFIDLDNFKTLNDT 278

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL------GSSEQEAAILANDL 199
            GH  GD+++  ++ +L     +   V RLGG+EF            +  ++A  +   +
Sbjct: 279 LGHDQGDELLQIVAQRLNTCVRSADTVARLGGDEFVVLVEQLSAHSDTLAEQAGAVGEKI 338

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
             ++  S     +G     T S GIA   H    +  ++ +AD A+Y AK +GRN +  F
Sbjct: 339 LAVL--SAPYALTGYQHRSTPSIGIALFNHAPTTVGELLKQADLAMYQAKTAGRNTLRFF 396

Query: 259 SDIEN 263
           +    
Sbjct: 397 NPSMQ 401


>gi|56413372|ref|YP_150447.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197362295|ref|YP_002141932.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56127629|gb|AAV77135.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093772|emb|CAR59246.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 660

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 92/188 (48%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 216 AGTDITEERRTQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+SGR +  
Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSESLIRTADTAMYNAKESGRGQFC 390

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 391 VFSPEMNQ 398


>gi|254227594|ref|ZP_04921025.1| FOG: EAL domain containing protein [Vibrio sp. Ex25]
 gi|262395643|ref|YP_003287496.1| C-di-GMP phosphodiesterase A-related protein [Vibrio sp. Ex25]
 gi|151939636|gb|EDN58463.1| FOG: EAL domain containing protein [Vibrio sp. Ex25]
 gi|262339237|gb|ACY53031.1| C-di-GMP phosphodiesterase A-related protein [Vibrio sp. Ex25]
          Length = 788

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 72/273 (26%), Positives = 124/273 (45%), Gaps = 35/273 (12%)

Query: 22  FSPHTFMIY---------FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NL 69
            SP  ++++          ++ F +     I +  + L+   L P   L+  L E   N 
Sbjct: 243 LSPAEYLMWNKVDKVWLELALSFGVAAFCTITLIVLVLYRYVLHPVSRLDKQLQELETNQ 302

Query: 70  SLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY- 125
              I  +  +  +G +S     + +EL I Y +  +L+  D L+ L N   F        
Sbjct: 303 RGNIEKLETNDEIGRLSSRFFDMYEELNIIYKKTKRLAETDHLTQLANRHRFHELATREL 362

Query: 126 ---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-------TPMFVGRL 175
              ++ L +++ D+D FK +ND +GH +GD ++   S  +  V         +P F  RL
Sbjct: 363 VSPSQHLWVIYVDLDNFKYVNDKYGHELGDNLLKVFSSHIKNVCQKFSHDYDSPCFAARL 422

Query: 176 GGEEFAAAALGSSEQEAAI----LANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
            G+EFA     SS Q+A      LA++L K I N   + S+  S  +T S GIA+     
Sbjct: 423 SGDEFAILL--SSNQDAQRLPDLLASELLKPISNLSPSWSN--SFPVTASVGIAQYPQDG 478

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             ++ ++  AD A+Y AK++G+N+   +S   N
Sbjct: 479 TDVAKLLSSADAAMYQAKRAGKNQYAYYSAALN 511


>gi|262377222|ref|ZP_06070447.1| WspR protein [Acinetobacter lwoffii SH145]
 gi|262307960|gb|EEY89098.1| WspR protein [Acinetobacter lwoffii SH145]
          Length = 568

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 8/176 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFK 140
             +L+E      R+  ++  D L+GL N  A    +           +  ++  DID+FK
Sbjct: 393 QQMLQERDALEFRLKNIAHSDSLTGLANRFALEEYIRFMENQPGQLSQTCLMIIDIDHFK 452

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND +GH VGD+VI  ++++L         + R GG+EF         Q+A I+A+ +R
Sbjct: 453 QVNDQYGHIVGDQVIQLVAERLKANVRATDLLVRYGGDEFLVLIENIQMQQALIVADKIR 512

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +    I  + G  I I++S G+A         T++  AD AL+ AK  GRN V 
Sbjct: 513 AEVVERYILTALGDQIQISVSIGVA--IGAVSWMTLLSNADDALFKAKAKGRNVVA 566


>gi|300022463|ref|YP_003755074.1| diguanylate cyclase/phosphodiesterase [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524284|gb|ADJ22753.1| diguanylate cyclase/phosphodiesterase [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 660

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 65/267 (24%), Positives = 113/267 (42%), Gaps = 28/267 (10%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYIGLTP------------FYGLEYILVENLSLV- 72
              +  +   S+ +A +   A ++   I L P            + GL  + V  L  + 
Sbjct: 130 ALTVGMAASGSVLLAPIPAAAVLYATAILLPPALKCILFVPGHQYLGLGALAVSFLVFLY 189

Query: 73  -IISITISLLLGYISG-----SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN 126
            +I  T  L L  +         +  L  +     +++  D L+G+ N  AF++ L + N
Sbjct: 190 GLIVTTGRLFLERLEAITRLQDTIAALSEAREETERVAMTDGLTGIANRRAFMARLNALN 249

Query: 127 EK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
            +      SI + D+D FK +ND  GH VGD ++  +S ++  +      V RLGG+EFA
Sbjct: 250 NRAGAKSFSIFYIDLDRFKSVNDALGHAVGDALLKSVSARITGLVREGDLVARLGGDEFA 309

Query: 182 AAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYR 239
             A    E+  A+ LA  L  ++  S+     G  + I    G+A  C        ++ +
Sbjct: 310 IVAQDIRERAFASSLAERL--VVSLSEPYDLEGQKVQIGACVGVALACESGVGGEMLLKQ 367

Query: 240 ADQALYVAKKSGRNRVVCFSDIENNTC 266
           AD A++ AK++GR     F      + 
Sbjct: 368 ADLAMFAAKEAGRGMYCIFEADMQRSA 394


>gi|307152484|ref|YP_003887868.1| PAS/PAC sensors-containing diguanylate cyclase/phosphodiesterase
           [Cyanothece sp. PCC 7822]
 gi|306982712|gb|ADN14593.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7822]
          Length = 619

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 10/184 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFK 140
           S   +      ++S  +  D L+GL+N   F   +    E +       ++ + D+D FK
Sbjct: 174 SDHSQARQLTRQLSWQASHDPLTGLVNRQVFEQRVEKALENVKSQNMTHTLGYLDLDKFK 233

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND+ GH  GD ++  +S  L     +   + RLGG+EF    L    +E   +A  LR
Sbjct: 234 MINDSCGHVAGDHLLRQISFLLQQQIRSSDTIARLGGDEFGLLLLNCPIEEGKKIAETLR 293

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +E+ +  I       I  S G+         ++T++  AD A YVAK  GRNR+  FS
Sbjct: 294 QALEDFRF-IWEQQRFSIGASIGLVPIDAESADVTTLLDTADTACYVAKSRGRNRIHTFS 352

Query: 260 -DIE 262
            D E
Sbjct: 353 LDEE 356


>gi|127514718|ref|YP_001095915.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella loihica PV-4]
 gi|126640013|gb|ABO25656.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella loihica PV-4]
          Length = 300

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 16/190 (8%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +++   +S  I  +L    +++  ++  D L+GL N                 + ++LSI
Sbjct: 110 AIVRARVSTHI--QLKQHSDKLKFMALHDQLTGLYNRHFLAERAAQSLSAMVRHQQELSI 167

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           V  D+D+FK+IND  GH +GD V+  ++  L   F     V R+GGEEF    +      
Sbjct: 168 VMLDLDHFKKINDFNGHHIGDLVLQAVAKLLQDCFRKEDVVARMGGEEF-VILMECGLDI 226

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKS 250
           A     D+R+ +            + +T S G+         +S ++  AD+A+Y AK  
Sbjct: 227 AREKTEDVRQQLARLNPM-----GLEVTGSFGVVTANPQNAELSHLLVLADEAVYKAKAD 281

Query: 251 GRNRVVCFSD 260
           GRN VVC+ D
Sbjct: 282 GRNCVVCYQD 291


>gi|307720562|ref|YP_003891702.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurimonas autotrophica DSM 16294]
 gi|306978655|gb|ADN08690.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurimonas autotrophica DSM 16294]
          Length = 936

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 83/190 (43%), Gaps = 11/190 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           + ++ +++     ++   +  D L+ L N + F   L          ++  +++F D+D 
Sbjct: 491 TKNMQQQIVQQSKKLHFQATHDELTLLPNRALFQDRLALSIDNAKRNSQDCALLFIDLDE 550

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND+ GH +GDKV+  ++ +          + R+GG+EF          EA      
Sbjct: 551 FKEINDSLGHHMGDKVLKIIAQRFKQAIREKDTLARIGGDEFVIIVDDYKNIEALSTLT- 609

Query: 199 LRKIIENSQINISSGPSI-HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +KI++ +   I  G  + +I+ S GI+           ++  AD A+Y AK  G+    
Sbjct: 610 -QKILDTTNKGIDIGEHVLYISASVGISVYPKDSTDAQNLLKCADAAMYKAKDEGKGNYQ 668

Query: 257 CFSDIENNTC 266
            +S       
Sbjct: 669 FYSQEMTQKA 678


>gi|170724023|ref|YP_001751711.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida W619]
 gi|169762026|gb|ACA75342.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas putida W619]
          Length = 896

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 88/184 (47%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + +  ++  RI +L+  D L+ L N  AFI SL           + ++  DID FK+IN
Sbjct: 453 DVTQTKLAQQRIERLAYTDNLTNLGNRPAFIRSLDERFARDGQSPICLLLVDIDNFKRIN 512

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++  L+ +L         + R    EFA     +S ++   +A  L + +
Sbjct: 513 DSLGHQTGDKLLISLARRLRNSLSVGGVLARFASNEFAVLLDDTSLEDGQGVAQQLLRTL 572

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I++T S G+A    H    +T++  A  AL+ AK +G+++V  F+++ 
Sbjct: 573 DKPMF--VDNQLINVTASVGLACAPLHGSDPTTLMKNAGLALHKAKANGKHQVQVFTEVL 630

Query: 263 NNTC 266
           N   
Sbjct: 631 NAEA 634


>gi|91227013|ref|ZP_01261550.1| GGDEF family protein [Vibrio alginolyticus 12G01]
 gi|91188815|gb|EAS75101.1| GGDEF family protein [Vibrio alginolyticus 12G01]
          Length = 480

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 97/203 (47%), Gaps = 5/203 (2%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
            Y L    +    + + ++     L  +     ++L I+  ++ +++  D L+ L N   
Sbjct: 264 VYPLYLFPIAIFIMAVATLYHIFALKRMVALRTRQLTIANQQLLEMTLTDSLTKLYNRRH 323

Query: 118 FISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
            I  L         L+++ FDID FK IND +GH  GD+ I  +++    +    M + R
Sbjct: 324 LIEQLALLNHLKRNLTVMVFDIDDFKSINDRYGHLAGDRAIVAIAEAAKSMTDDRMTLAR 383

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
           +GGEEFA      SE+EA   AN L K + +  + I  G +IH++IS G A       I 
Sbjct: 384 IGGEEFALVTSSLSEREALNFANMLCKAVYDQPV-ILGGQAIHLSISLGCAYYPEFTHIV 442

Query: 235 TIIYRADQALYVAKKSGRNRVVC 257
           ++   AD+ +Y  K  G+NR V 
Sbjct: 443 SL-QDADELMYQGKSEGKNRAVF 464


>gi|300920287|ref|ZP_07136731.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
 gi|300412696|gb|EFJ96006.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
          Length = 460

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LSI+  D+D FK
Sbjct: 281 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTILKREIAHANRAGTPLSILIIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +++ +   +A  +R
Sbjct: 339 EINDTWGHNTGDEILRQVSQAFYDNVRSSDYVFRYGGDEFIIVLTEATQTDTLRIAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E ++I   +G  I +++S G A          +I  AD+ALY AK+ GRN V  +
Sbjct: 399 SRVEKTKIKSPAGDFIPLSLSIGAAMFNGHPDYERLIQIADEALYTAKRRGRNCVELW 456


>gi|238024145|ref|YP_002908377.1| PAS/PAC sensor-containing diguanylate cyclase [Burkholderia glumae
           BGR1]
 gi|237878810|gb|ACR31142.1| Diguanylate cyclase with PAS/PAC sensor [Burkholderia glumae BGR1]
          Length = 600

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 92/191 (48%), Gaps = 12/191 (6%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------S 130
           +L  G+I+   + E       + +L+  D L+ L N   F++   +   +L        +
Sbjct: 413 TLWHGFIT--DVTERKRIETELHELATTDHLTELSNRRDFLARSEAELARLRHAGRGATA 470

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D+FK +ND +GH +GD+ +   +  L         VGR+GGEEFA    G    
Sbjct: 471 VLMLDLDHFKSLNDRWGHALGDRALRHFAQLLRQEARGNDIVGRIGGEEFAVVLPGLGID 530

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKK 249
            A      L++ +  S + +     + +T+S G+      +P +  ++ R D+ALY+AK 
Sbjct: 531 AALAFGMRLQRRMSTSPLALDD-RLVVLTVSIGVDRMIPTDPGVDQVLTRCDKALYLAKA 589

Query: 250 SGRNRVVCFSD 260
            GRNRV  + +
Sbjct: 590 RGRNRVELYGE 600


>gi|149184738|ref|ZP_01863056.1| sensory box/GGDEF family protein [Erythrobacter sp. SD-21]
 gi|148832058|gb|EDL50491.1| sensory box/GGDEF family protein [Erythrobacter sp. SD-21]
          Length = 710

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 11/183 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDY 138
           S   +     +     +LS+ D L+GL N       L S  +         +++  D+D 
Sbjct: 126 SAKDVTAQRETQRDAERLSQYDSLTGLANRHRMHKKLDSRLKHFRNDKRVCALMMLDLDR 185

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILAN 197
           FKQ+ND  GHP GD+++  ++ +L  + G    +GRLGG+EF        ++ +   LA 
Sbjct: 186 FKQVNDTLGHPAGDELLKQVAARLGQICGHLGEIGRLGGDEFLIMLPDVDDRGDLGDLAA 245

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            + ++I   Q    +G    I +S GIA   +       +I  AD ALY AK  GR +  
Sbjct: 246 RVIQMIA--QPYSINGSRAIIGVSLGIAIAPYDGLDAEELIKAADLALYAAKGGGRGQYR 303

Query: 257 CFS 259
            +S
Sbjct: 304 FYS 306


>gi|170742550|ref|YP_001771205.1| diguanylate cyclase [Methylobacterium sp. 4-46]
 gi|168196824|gb|ACA18771.1| diguanylate cyclase [Methylobacterium sp. 4-46]
          Length = 384

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 64/253 (25%), Positives = 121/253 (47%), Gaps = 23/253 (9%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYF-SIFFSIFI-ATVIFIANIFLFYIGLTPFYGLEYILV 66
             IW   ++ L S +P   ++   ++ +++ I AT+ F   +      ++P+  +     
Sbjct: 136 WEIWRGRDEPLVSRAPAAAVVGSEALLYAVRIPATLTF--PVPAGNPLVSPWVAV----- 188

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-- 124
               L   ++  ++ + ++  ++ KE      R+S LS  D L+G+ N         S  
Sbjct: 189 ----LCFAALLYTVAIAFLFMALAKERLEWEQRLSALS--DPLTGVCNRRGLEVRAASLL 242

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
            + + +++ FD+D+FK++ND +GH +GD V+         +      + RLGGEEFA   
Sbjct: 243 ASGRATLLLFDLDHFKRVNDTYGHAIGDAVLVGFCAAAQALLPPQAVLARLGGEEFACLL 302

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
              ++  A  +A  +R+ +   + +    P + IT+S G A       +  ++ RAD AL
Sbjct: 303 P--ADAAAGPIAETIRRAVAALRPDCE--PGLRITVSVGAA--RGGTSLERLLARADAAL 356

Query: 245 YVAKKSGRNRVVC 257
           Y AK+ GR+RVV 
Sbjct: 357 YEAKRLGRDRVVW 369


>gi|89902312|ref|YP_524783.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
 gi|89347049|gb|ABD71252.1| response regulator receiver modulated diguanylate cyclase
           [Rhodoferax ferrireducens T118]
          Length = 314

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 19/233 (8%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
           +F I + T      +     G   F    + L+E  + +   + + LL         K+L
Sbjct: 86  YFPILVITAHPDHKLRALASGAKDFISKPFDLMEVRTRIHNMLEVRLL--------YKQL 137

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNF 146
                 +  L+  D L+GL N    +  +             +++V+ D+D FK+IND  
Sbjct: 138 EHQNRALESLALHDPLTGLPNRRLLMDRMALGIAHARRNRGNMAVVYLDLDGFKEINDTL 197

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIEN 205
           GH  GD ++  ++ +LV        V R+GG+EF  A    S   +   L + + + +  
Sbjct: 198 GHDGGDALLKMVATRLVGAVRQEDTVARVGGDEFVIALAELSHGDDMEKLVSKVLQAV-- 255

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S+     G S+++T S G++    H + + T++  AD ALY AK +G+N    
Sbjct: 256 SKPCSIQGSSVNVTASVGVSVYPVHGDNVETLMKSADLALYEAKGAGKNDYRI 308


>gi|298485243|ref|ZP_07003336.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160231|gb|EFI01259.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 897

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + +  ++  RI +L+  D L+ L N  AFI +L        +  +S++  DID FK+IN
Sbjct: 454 DITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDERFVRDTDTPMSLLLVDIDNFKRIN 513

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++  L+ +L         + R    EFA     + ++     A+ +   +
Sbjct: 514 DSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLLDNTDQEAGQATASQVLATL 573

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I +T S G+A    H     T++  A  AL+ AK +G+++V  F++  
Sbjct: 574 DKPMF--VDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFTEAL 631

Query: 263 NNTC 266
           N   
Sbjct: 632 NAEA 635


>gi|89898827|ref|YP_521298.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
 gi|89343564|gb|ABD67767.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
          Length = 520

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 83/173 (47%), Gaps = 8/173 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L +L    +R+S  +R D L+G LN      ++             L +   DID FK++
Sbjct: 346 LVKLHQELDRVSSQARHDPLTGALNRKGLEEAVNREVSNVRRKETPLCVALLDIDNFKKL 405

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD  +A L+     V      + R GGEEF      ++          L++ 
Sbjct: 406 NDALGHASGDVALAHLATVTREVMRPHDTLARYGGEEFVILMPDTALDNGIEAMTRLQRE 465

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +  ++  ++    + IT SAG+A+    E   + I RADQA+Y+AK++G+NRV
Sbjct: 466 L-TTRFFLAGTEKVLITFSAGVAQLATDETGQSAIKRADQAMYLAKRAGKNRV 517


>gi|45657010|ref|YP_001096.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|45600247|gb|AAS69733.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 311

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 92/206 (44%), Gaps = 31/206 (15%)

Query: 82  LGYISGSILKELFISYNRISQLSR--------------IDCLSGLLNHSAFISSL----- 122
           L Y++G  + E   +  +ISQL+                D L+ L N  AF + L     
Sbjct: 110 LVYVTGRDITETIEANRQISQLATELKEANDLLFEQATTDPLTKLKNRRAFTNDLHSLLR 169

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   LS++  D+D+FK  ND FGH  GDKV+  L+  L     +   +GR GGEEF
Sbjct: 170 FMQQEKSFLSLLMIDVDHFKTYNDQFGHLAGDKVLVCLAKVLENTLRSNDLLGRFGGEEF 229

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-----KEPIST 235
            AA   + E+++  +   L   +        S     ITIS GI+             + 
Sbjct: 230 VAALPNTCEKKSIEIGERLVNAVREFNWEYRS-----ITISVGISTSDFEKKQLDVDSTN 284

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDI 261
           +I +AD+ALY +K +GRN+    S I
Sbjct: 285 LIEKADKALYQSKVNGRNKATHSSQI 310


>gi|291006137|ref|ZP_06564110.1| diguanylate cyclase [Saccharopolyspora erythraea NRRL 2338]
          Length = 544

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 87/203 (42%), Gaps = 20/203 (9%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GS 124
           V+  +TI+ L+  +                +L+  D L+GL     F + L         
Sbjct: 152 VLFLLTIARLVVMVVEQ------------RRLAVTDVLTGLCTRRYFEAHLPQAMARCER 199

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
               L++   DID+FK IND +GHPVGD+V+   + +L         + R GGEEFA  A
Sbjct: 200 AGRPLAVFIIDIDHFKSINDRYGHPVGDRVLVETATRLRRAVREGDVLARYGGEEFALLA 259

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS-AGIAERCHKEPISTIIYRADQA 243
           L         +A  LR  +    + +S+     +T+S               +I  AD+A
Sbjct: 260 LDVDRAAVTGMAERLRAAVGGMPVELSTADRAWVTVSVGAAGGDGVGRSPQQLIADADRA 319

Query: 244 LYVAKKSGRNRVVCFSDIENNTC 266
           LY AK  GR+RV    ++E+   
Sbjct: 320 LYAAKAMGRDRVALGDELEHAPA 342


>gi|239827355|ref|YP_002949979.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. WCH70]
 gi|239807648|gb|ACS24713.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. WCH70]
          Length = 676

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 90/208 (43%), Gaps = 6/208 (2%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +I +E     I++    L    ++   + E      ++ QL+  D L+G+ N S F   +
Sbjct: 212 WIWMEAQGKAIVNEQNELDYVIVTVKNIGERKKYEEKLRQLAYFDSLTGIANRSYFERYI 271

Query: 123 GSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
               E     ++ + D D FK IND+F H  GD  +     ++  V  T  F  R+GG+E
Sbjct: 272 KQLIESQTDFALCYLDFDKFKWINDHFSHQAGDYFLQEAVRRVQSVLRTEDFFARIGGDE 331

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIY 238
           F       +++E   LA++L +     +        I  T+S GIA        I  ++ 
Sbjct: 332 FVLLLPNITKEEVTKLADELVQTF--HKPFYYEKQLIQSTLSMGIAFFPKDSDRIEQVMK 389

Query: 239 RADQALYVAKKSGRNRVVCFSDIENNTC 266
            ADQALY  KK G+N    +   +N   
Sbjct: 390 YADQALYNVKKRGKNGYEFYRPTQNRKA 417


>gi|117618806|ref|YP_855696.1| GGDEF domain-containing protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560213|gb|ABK37161.1| GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 539

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 12/172 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           K L I  +++     +D L+ + N +A    L         YN  L +   DID+FK IN
Sbjct: 370 KRLTIQKHKL----FLDSLTQVHNRAALDERLELEYKRWLRYNTPLCLAIIDIDHFKHIN 425

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           DN+GH  GDK +  ++  L        F+ R GGEEF       +  +       LR+ I
Sbjct: 426 DNYGHMAGDKALKVVAKALQGALRDTDFIARFGGEEFVVLLPNINPDKFQKPLETLRQTI 485

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++          + ITIS G       +  +    RAD+ALY +K SGR++V
Sbjct: 486 KSIPFRFRD-ARVEITISIGATLFREGDHTTDAFERADKALYSSKNSGRDQV 536


>gi|83310455|ref|YP_420719.1| signal transduction protein [Magnetospirillum magneticum AMB-1]
 gi|82945296|dbj|BAE50160.1| Predicted signal transduction protein [Magnetospirillum magneticum
           AMB-1]
          Length = 916

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 10/184 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQ 141
             +     + + I  L+R D L+GL N       L          +   ++F D+D FK 
Sbjct: 469 RDISARKEAESNIRFLARHDALTGLANRVVLRERLDEILPQTGARQMHCLLFIDLDNFKL 528

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND  GH  GD+++  ++ +L  + G    V R GG+EF   A    + + AA LA  + 
Sbjct: 529 VNDVLGHSFGDRLLVEVAGRLRSIEGGHNIVCRHGGDEFILLAPDIRTRERAAELAERVL 588

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++ ++        +I +  S GI+          T+I +AD A+Y AK+ GR     F+
Sbjct: 589 AVMGDA--FAIDAQAIEVGCSIGISVAPDDGTDAETLIRKADIAMYKAKEKGRLGYQFFT 646

Query: 260 DIEN 263
              +
Sbjct: 647 AAMD 650


>gi|86147382|ref|ZP_01065695.1| sensory box/GGDEF family protein [Vibrio sp. MED222]
 gi|85834810|gb|EAQ52955.1| sensory box/GGDEF family protein [Vibrio sp. MED222]
          Length = 579

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 18/192 (9%)

Query: 84  YISGSILKELFISYNRIS-------QLSRIDCLSGLLNHSAFISSLGSYNE-------KL 129
            I    + E +++  ++        +LS +D L+ + N   F   L +           L
Sbjct: 382 LIMARDITERYLAEQKLEEANLELERLSFMDSLTQVSNRRRFDEQLSTLWHHHVREKLPL 441

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSS 188
           +I+  DID+FK  ND +GH  GD  +  +S     V   +   V R GGEEF      ++
Sbjct: 442 TIMLCDIDFFKGYNDFYGHQQGDDALIQVSQAFKQVLNRSSDCVARYGGEEFGFILPNTT 501

Query: 189 EQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAER--CHKEPISTIIYRADQALY 245
            + A ++A  +   ++   + +  S  S  IT+S GI        + + + +  AD ALY
Sbjct: 502 TEGALMVARRIHDEVQKLGLAHEKSTVSDSITVSIGIVSYIPTPDDEMESAVALADSALY 561

Query: 246 VAKKSGRNRVVC 257
            AK  GRNR + 
Sbjct: 562 QAKSDGRNRSIV 573


>gi|302186419|ref|ZP_07263092.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 897

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + +  ++  RI +L+  D L+ L N  AFI +L        +  +S++  DID FK+IN
Sbjct: 454 DITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDERFARDTDTPMSLLLVDIDNFKRIN 513

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++  L+ +L         + R    EFA     + ++     A  +   +
Sbjct: 514 DSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLIDNTDQEAGQATATQVLATL 573

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I +T S G+A    H     T++  A  AL+ AK +G+++V  F++  
Sbjct: 574 DKPMF--VDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFTEAL 631

Query: 263 NNTC 266
           N   
Sbjct: 632 NAEA 635


>gi|296534717|ref|ZP_06897101.1| sensory box/GGDEF family protein [Roseomonas cervicalis ATCC 49957]
 gi|296264955|gb|EFH11196.1| sensory box/GGDEF family protein [Roseomonas cervicalis ATCC 49957]
          Length = 507

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 8/183 (4%)

Query: 81  LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDI 136
           LLGY      + E      RI+ ++R D L+GL N   F S L    +  E   ++  D+
Sbjct: 140 LLGYRGVDRDVTEREARTARIAWMARHDSLTGLANRMEFQSRLEDRLARGEPAGLLLLDL 199

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK++ND  GH  GD ++  ++++L  +        RLGG+EFAA    +  ++A  +A
Sbjct: 200 DYFKEVNDQLGHASGDVLLRQVAERLTGLLPEGSLGARLGGDEFAALL-AAGPEQAQAVA 258

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             L   +   +     G    + +S G+A    H   +S ++  AD ALY AK+ GR  V
Sbjct: 259 QRLAAAL--CEPYQLDGHRAVVGVSCGLALAPRHAGSVSALLRCADLALYQAKQEGRGHV 316

Query: 256 VCF 258
             +
Sbjct: 317 CLY 319


>gi|172035684|ref|YP_001802185.1| hypothetical protein cce_0768 [Cyanothece sp. ATCC 51142]
 gi|171697138|gb|ACB50119.1| hypothetical protein cce_0768 [Cyanothece sp. ATCC 51142]
          Length = 700

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 12/187 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQ 141
           LK+   +  ++      D L+GL N    +  + +         +   +++F D D FK 
Sbjct: 239 LKKYQENNAKLQHDLFHDNLTGLANRVYILQEIEAEIKEKKANQDHCFAVLFLDCDRFKV 298

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           IND+ GH VGD+V+  ++ +L +         RLGG+EF       S  ++   +A+ + 
Sbjct: 299 INDSLGHDVGDEVLINIAQRLNLCIRKHDIAARLGGDEFVILIKNLSDIKQVTQIADRIL 358

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           K  + S+  I     + IT+S G+       E    ++  AD  +Y AK+ G+ +   F 
Sbjct: 359 K--QMSEPLILENQQLVITMSIGVVVSQENYENADDLLRDADITMYHAKQQGKAQYAIFK 416

Query: 260 DIENNTC 266
            I +   
Sbjct: 417 PIMHTQA 423


>gi|149191412|ref|ZP_01869663.1| hypothetical protein VSAK1_22129 [Vibrio shilonii AK1]
 gi|148834761|gb|EDL51747.1| hypothetical protein VSAK1_22129 [Vibrio shilonii AK1]
          Length = 395

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 92/204 (45%), Gaps = 16/204 (7%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G  + +   LS+ +I      +L  I+G  +K        I+ LS  D L+ L N  A  
Sbjct: 189 GFVHSMAFLLSIFLIVSISFSMLWMINGRQVKA-------INALSYFDPLTQLGNRRALE 241

Query: 120 SSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             +             +S++  DID+FK IND +GH  GDKVI  +SD +          
Sbjct: 242 VYIEEDLPKQLARGTNVSVIMLDIDFFKMINDRYGHIAGDKVIRKVSDIIQDSLNGGNTT 301

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232
            R GG+E           +A  LA  LR  +E        G    I+ S G+A+    E 
Sbjct: 302 FRFGGDEIMVVLYDMDLHQARALAEQLRLRVEKYG--NIKGEEFSISCSFGVAQLVDDES 359

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
             +++ RAD+ALY AK+SGRN+V 
Sbjct: 360 WDSLVGRADKALYEAKESGRNKVC 383


>gi|116249925|ref|YP_765763.1| GGDEF domain/EAL domain-containing protein [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115254573|emb|CAK05647.1| putative GGDEF/EAL domain transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 794

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 11/191 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           ++   L E   +   I  L+  D L+ L N S F + +          N ++++ + D+D
Sbjct: 333 LAVRDLTERRQAEEMIEHLAHHDVLTDLPNRSLFDTRIRQALQMAERKNSEVALFYLDLD 392

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILA 196
            FK +ND FGH  GD+++  ++  L  V      V RLGG+EFA     G     A  LA
Sbjct: 393 RFKAVNDIFGHAEGDRILRKVASILRRVADESDTVARLGGDEFAIIQLAGQQPAAAQKLA 452

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
            D+      ++++ +  P+  + +S GIA           +   AD ALY  K  GR ++
Sbjct: 453 ADILGEFA-AEMDTARDPT-AVGVSVGIALYPTDGAAAEELCNNADTALYRVKHDGRGKI 510

Query: 256 VCFSDIENNTC 266
             F    +   
Sbjct: 511 CFFDAEMDKAA 521


>gi|28875472|gb|AAO59956.1| putative sensor kinase [uncultured bacterium]
          Length = 237

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 11/177 (6%)

Query: 93  LFISYNRIS----QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           L ++  R+     + +  D L+GL N      +L +           +S +  DID+FK 
Sbjct: 55  LALANQRLRDALLEKALYDPLTGLRNRHHLEDTLRTQMGQAIHNQTPISCLMIDIDHFKD 114

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND FGH  GD VI  ++  +           R GGEEF     G  E+EA  +A D+  
Sbjct: 115 VNDRFGHEAGDGVIKGVAAIIQRAIRDSGMAFRYGGEEFLVLLSGMGEEEANRMATDIYN 174

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +    +   +    HI +S G+A          ++  AD ALY AK+ GR+R+V F
Sbjct: 175 GVHALTLRFGTSDISHIDVSIGVASYPQHAQSDNLLRAADVALYRAKELGRSRIVSF 231


>gi|317484997|ref|ZP_07943880.1| GGDEF domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316923735|gb|EFV44938.1| GGDEF domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 698

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 10/186 (5%)

Query: 82  LGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFD 135
           LGY+   + + E     NR  + +  D L+GL N       +    E       + +F D
Sbjct: 496 LGYLGKLTNINERKSEVNRWREQANTDPLTGLSNRKRIEEQIAQALEDDKENGAAFLFID 555

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAI 194
           +D FK +ND  GH  GD+V+  ++ ++     T   VGR+GG+EF        S    + 
Sbjct: 556 VDNFKAVNDTLGHMFGDEVLRHVASEIRRKVRTSDIVGRVGGDEFIVFLRNIRSLDAISK 615

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
            A ++    ++      + P   I+ S GIA           ++Y+ADQALY AK+ G+N
Sbjct: 616 KAGEICAAFKSK--YSEAIPHGGISCSVGIALYPGDGACYEDLMYKADQALYAAKEKGKN 673

Query: 254 RVVCFS 259
               + 
Sbjct: 674 CFAFYD 679


>gi|255017618|ref|ZP_05289744.1| hypothetical protein LmonF_07385 [Listeria monocytogenes FSL
           F2-515]
          Length = 311

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 109/238 (45%), Gaps = 12/238 (5%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           FS F+A +I      L+Y       G      E +   ++    +LL+ Y    I K   
Sbjct: 76  FSRFVALIILNFPAILYYFVNNFDEGRILRGFEIIEYFLLFFVTALLVFYACNYIDKSNL 135

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
           +  N +++ +  D L+ L N   F               + LS+   DID+FK+IND  G
Sbjct: 136 VIQN-LTETAMTDSLTNLPNMRFFTQQFGWIFTKSQKRKKSLSLFIIDIDHFKEINDFHG 194

Query: 148 HPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  G+ V+A  S  L    F       R+GGEEFA        ++AA++A+  R+ +E +
Sbjct: 195 HQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTEQAALIADFFREEVERA 254

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS-DIE 262
           +    +  S  +T+S G+A          ++   ADQALY AK++GRN++     +IE
Sbjct: 255 KFPY-NPASGKVTVSIGVASASSNFSTTESLFEAADQALYQAKQNGRNQIAVHQGEIE 311


>gi|240137808|ref|YP_002962280.1| putative sensory box-containing diguanylate
           cyclase/phosphodiesterase; permease, PAS/PAC, GGDEF and
           EAL domains [Methylobacterium extorquens AM1]
 gi|240007777|gb|ACS39003.1| putative sensory box-containing diguanylate
           cyclase/phosphodiesterase; permease, PAS/PAC, GGDEF and
           EAL domains [Methylobacterium extorquens AM1]
          Length = 815

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
           GS + +   +   I+ L+  D L+GL N + F    G           ++ +++ D+D F
Sbjct: 363 GSDVTQRREADAHIAYLATRDPLTGLSNRAVFHDVAGEACTASMSGGPRVHLLYLDLDGF 422

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND  GH  GD ++  ++D+L         V RLGG+EFA   L     EA ILA  +
Sbjct: 423 KKVNDTAGHCAGDDLLRQVADRLCASVDANAQVFRLGGDEFAILHLSRESAEAEILAEAV 482

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
             I    +  +  G    I +S GIA        +  ++ +AD ALY AK++GR R  CF
Sbjct: 483 --IASLHRPYLIEGMQAEIGVSIGIARAPQDATELQDLMRKADLALYTAKEAGRGRWQCF 540

Query: 259 S-DIENN 264
             D+E  
Sbjct: 541 EADLERR 547


>gi|254500696|ref|ZP_05112847.1| ammonium transporter, putative [Labrenzia alexandrii DFL-11]
 gi|222436767|gb|EEE43446.1| ammonium transporter, putative [Labrenzia alexandrii DFL-11]
          Length = 1043

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 9/178 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQ 141
            L+E   +  +I  L++ D L+ L N + F + L     +        +++  D+D FK 
Sbjct: 581 DLRERKKAEAQILHLAQHDPLTDLPNRAVFNAELQQTMRRCEKKEQGAALLLVDLDKFKD 640

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLR 200
           IND  GHP GD VI   +++L+        V RLGG+EFA      S   +A  +A+ L 
Sbjct: 641 INDLHGHPAGDAVIRVTAERLLSACRGSDTVARLGGDEFAIIQTSISFANQAEDMAHRLV 700

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            I+    +N   G  +    S G+A     +    ++  AD ALY AK +GR     F
Sbjct: 701 AILSE-PVNCGHGLIVKPGASIGVAMIAAGQSEEQVVSNADIALYNAKSAGRQTYCLF 757


>gi|116249205|ref|YP_765046.1| GGDEF/EAL domain-containing protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115253855|emb|CAK12250.1| putative transmembrane GGDEF/EAL domain protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 665

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 65/264 (24%), Positives = 108/264 (40%), Gaps = 29/264 (10%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS 86
           FM+  ++FFS      +  + + L    +T            L+  +  I+      +++
Sbjct: 150 FMMGANLFFSFPFRLSVITSGLVLCAFFITIVEFFPSSQTYKLAFGMFYISCFTFTSFVN 209

Query: 87  GSILKE-----LFISYNR------------ISQLSRIDCLSGLLNHSAFISSLGS----- 124
             +  E     L  +  R            + +LS  D L+G+ N  A    L       
Sbjct: 210 WRLNVERRNVLLNAAEARHQHWEASERGRSLLELSHTDYLTGISNRRALDRRLDECWAAW 269

Query: 125 --YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFA 181
                  S+   D+D+FK+ ND +GH  GD+ +  +++ L  V  +    +GR GGEEF 
Sbjct: 270 KDERRDFSVFLIDVDFFKRFNDRYGHQEGDRCLTVIANALKAVVESSDGMIGRYGGEEFI 329

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPS--IHITISAGIAERCH--KEPISTII 237
                +  + A  LA  +R  +E+  I     P     +T+S G+A       E +  I+
Sbjct: 330 VVMPAALPKVAMTLAEKIRMEVESLAIAHDERPDDMSTVTVSIGVAFTREKVGEKVERIV 389

Query: 238 YRADQALYVAKKSGRNRVVCFSDI 261
             AD ALY AK SGRN +  F  +
Sbjct: 390 READLALYNAKASGRNCIRSFDPL 413


>gi|88861223|ref|ZP_01135856.1| GGDEF family protein [Pseudoalteromonas tunicata D2]
 gi|88816816|gb|EAR26638.1| GGDEF family protein [Pseudoalteromonas tunicata D2]
          Length = 360

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 63/182 (34%), Positives = 91/182 (50%), Gaps = 8/182 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDY 138
           ++ + +  L     +  Q +  D L+GLLN  +F   +         N  L + F DID 
Sbjct: 172 LAHTEISRLRAELKQTKQDATHDALTGLLNRGSFDDDITQLCSNTKSNSSLFLTFVDIDN 231

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ ND+FGH  GD+V+  ++  L           R GGEEF   +  SS+Q        
Sbjct: 232 FKQFNDDFGHQKGDQVLKIVAKMLHNKCDQLNIAYRFGGEEFCIISQNSSQQICFDFVES 291

Query: 199 LRKIIENSQINIS-SGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           LR  IE   +  S +G ++  I+ S GIA     +  + +I +ADQALY+AK+SGRNRV 
Sbjct: 292 LRVAIERLSVKDSKTGANLRKISASFGIARHQQHDSPAELIEKADQALYLAKQSGRNRVE 351

Query: 257 CF 258
            F
Sbjct: 352 IF 353


>gi|324016617|gb|EGB85836.1| diguanylate cyclase domain protein [Escherichia coli MS 117-3]
          Length = 362

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 102/223 (45%), Gaps = 11/223 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +F+A ++ +    L  + LT          +E    + I +   LL G++S     +L  
Sbjct: 142 LFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAE 201

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   + + L         +N   +++  DID+FK IND +GH
Sbjct: 202 HKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGH 261

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+  + A      + + +   ++
Sbjct: 262 DVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL 321

Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKS 250
              + P + + IS G+A    +       +  AD ALY AKK+
Sbjct: 322 P--NTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKA 362


>gi|304309706|ref|YP_003809304.1| PAS:GGDEF domain protein [gamma proteobacterium HdN1]
 gi|301795439|emb|CBL43637.1| PAS:GGDEF domain protein [gamma proteobacterium HdN1]
          Length = 542

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 13/176 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S +        ++  ++  D L+GL N   F   +          + K ++++ D+D FK
Sbjct: 358 SDISRRKAQEAQLRHIAHHDALTGLPNRILFNDRMEQIFKRAHRQHNKFAVIYLDLDNFK 417

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDL 199
            +NDNFGH  GD+++  ++ ++         V RLGG+EF        +QE A  +A  +
Sbjct: 418 PVNDNFGHDTGDQLLQAVATRITEHVRGTDTVTRLGGDEFVILLEDIVDQEMAEEIAEKI 477

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAK--KSGR 252
              I   +   ++G ++ ++ S GIA    H +    +++ AD  +Y  K    GR
Sbjct: 478 STEIR--KPFQANGHTVQVSASLGIALYPDHGDTARDLLHYADLGMYRRKMLHHGR 531


>gi|326319248|ref|YP_004236920.1| diguanylate cyclase with PAS/PAC and GAF sensors [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323376084|gb|ADX48353.1| diguanylate cyclase with PAS/PAC and GAF sensors [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 493

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 10/188 (5%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSI 131
           +L  G    ++L E   +   + +L+  D ++GL N +  +                L+I
Sbjct: 292 ALEAGARMCALLLEREHTQQSVRRLAYQDAVTGLPNRAFLLEATERLIREARREGHCLAI 351

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
            F D+D FKQ+ND  GH  GD ++  ++ +L         V R+GG+EFAA       +E
Sbjct: 352 AFIDLDRFKQVNDQLGHRAGDDLLREVAQRLQGASRRADIVARIGGDEFAAVLPHCGSRE 411

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
           AA  A     +    +  +  G    +  S GIA+        +T+++ AD A+Y AK++
Sbjct: 412 AAAAARR--LLAAAVRPVLLHGRCWSLGASIGIAQYPRDGTNAATLLHHADLAMYAAKRA 469

Query: 251 GRNRVVCF 258
           G  R+  F
Sbjct: 470 GGQRLSVF 477


>gi|254492483|ref|ZP_05105655.1| hypothetical protein MDMS009_2825 [Methylophaga thiooxidans DMS010]
 gi|224462375|gb|EEF78652.1| hypothetical protein MDMS009_2825 [Methylophaga thiooxydans DMS010]
          Length = 450

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 15/198 (7%)

Query: 81  LLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISS------LGSYNEKLSIV 132
           +L ++S  I    E       + QL+  D L+GL N   F         +      L+++
Sbjct: 253 VLEFVSTQIAAAIERKQMIEHLRQLAMYDKLTGLPNRQLFSDRIQQAIAMARRGGHLALL 312

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE--Q 190
           + D+D FK+ NDN GH  GD+++  ++++L         V RLGG+EF            
Sbjct: 313 YLDLDTFKEANDNLGHEAGDQLLKQVAERLRGCLRESDTVARLGGDEFVILLDNLDRLNI 372

Query: 191 EAAILAND-LRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAK 248
               +A+  L  + E  Q++        ++ S GI+      E    ++ RAD A+Y AK
Sbjct: 373 IVQEVADKVLLTLAEPYQVDTMKAE---MSASIGISFYPDNGETERDLLKRADDAMYEAK 429

Query: 249 KSGRNRVVCFSDIENNTC 266
           + G N        +N   
Sbjct: 430 RQGGNCYSLAKVTQNEAA 447


>gi|146275877|ref|YP_001166037.1| diguanylate cyclase/phosphodiesterase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|145322568|gb|ABP64511.1| diguanylate cyclase/phosphodiesterase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 656

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 63/282 (22%), Positives = 115/282 (40%), Gaps = 32/282 (11%)

Query: 7   DFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILV 66
           +   IW+  + +  +    TF +  +   ++F   +   A      +  T  +   +   
Sbjct: 107 EAWCIWVYQDGDPYARGNLTFFLGLTEVSTVF-CLMTLRAAAMRVAVVSTFSFAFYFSWA 165

Query: 67  ENLSLVIISITISLLLG----------------YISGSILKELFISYNRI----SQLSRI 106
           E+  ++  S+ +SL+                    S  IL+   +   ++     +++  
Sbjct: 166 EDGRMLSQSVVLSLVCAGMVVVTHRYNLSFSELIRSQRILRTRQLETEKLSEENRRIAFS 225

Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D LSGL N    +S L           + L+++F D+D FK +ND  GH  GD +I  + 
Sbjct: 226 DPLSGLPNRRELLSRLDRLEGGPDPVRDTLAVIFIDLDGFKAVNDEHGHQAGDALIRSIC 285

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHI 218
            +L         + R+GG+EFA    G S E EA  LA+ L + I  S   +     + +
Sbjct: 286 QRLSRHCPAHARLARVGGDEFAILFEGHSAEAEAIALASTLLEEI--SLPVLVERHVLQV 343

Query: 219 TISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             S G+A           ++ RAD A+Y AK  G+ ++  + 
Sbjct: 344 GGSIGVAANTDMAATPRELLRRADTAMYHAKTQGKGQIAVYD 385


>gi|222054192|ref|YP_002536554.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. FRC-32]
 gi|221563481|gb|ACM19453.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. FRC-32]
          Length = 305

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 10/175 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
           +  EL  S   + QLS  D L+ L N    + +L    ++       LS++  DID+FK+
Sbjct: 127 LQDELKRSNELLKQLSNTDPLTHLYNRRYLMEALDREYQRAARKESSLSLIIIDIDHFKK 186

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +NDN+GH  GD V+A ++  L  +  +     R GGEEF      ++  +A + A   R 
Sbjct: 187 VNDNYGHQQGDVVLAAVAALLKKMVRSYDVAARYGGEEFVVLLSETALSQAMLFAERFRC 246

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254
            ++   +       + IT+S G+A       + + ++  +AD+ALY AK+ GRN+
Sbjct: 247 AVQEI-VFTGKMNGLTITVSLGVATFPSAKVDCVDSLFRQADEALYKAKQGGRNK 300


>gi|84392305|ref|ZP_00991732.1| GGDEF domain [Vibrio splendidus 12B01]
 gi|84376425|gb|EAP93305.1| GGDEF domain [Vibrio splendidus 12B01]
          Length = 657

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 83/174 (47%), Gaps = 10/174 (5%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFG 147
               R+  L+  D L+GL N +     +          N+  ++++ D+D FK +NDN+G
Sbjct: 485 KEMERLEHLAHHDALTGLANRAQLYKVMDDVVTSSHYSNQHFAVIYLDLDGFKYVNDNYG 544

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+++  +S +L+        V RL G+EF      +++   A LA  L ++I   Q
Sbjct: 545 HDAGDEILKEVSSRLLSQVRAGDLVARLSGDEFVLIIKQTNKVLLAKLAERLLELI--GQ 602

Query: 208 INISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
                  S+H+  S GI      E  I  I+  AD+A+Y AK+ G+ + V   D
Sbjct: 603 EVTHKQRSLHVGASLGIHLVDGSERDIDVILKVADEAMYQAKRKGKGQFVFSRD 656


>gi|307945479|ref|ZP_07660815.1| GGDEF family protein [Roseibium sp. TrichSKD4]
 gi|307771352|gb|EFO30577.1| GGDEF family protein [Roseibium sp. TrichSKD4]
          Length = 262

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 100/227 (44%), Gaps = 5/227 (2%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
           + + F   I  +I +A   L    L P   LE       S+ +I++ +S  +   +   +
Sbjct: 14  WDVLFWTTITVLIALATTGLIGWILLP---LEVFAAAAPSMFLIALFLSSCMSLFACRQI 70

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFIS-SLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
             L +++  I  L   D L+G      F      +      ++  D+D+FK IND FGHP
Sbjct: 71  MHLQLAHKTIKLLHATDALTGTTTRRRFFEAQAETQAAPAVVMMVDVDHFKSINDRFGHP 130

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGD+V+  ++  L+       +V R+G EEF         ++A  LA DL   +   +  
Sbjct: 131 VGDEVLVQIAGTLMENVRDRDWVVRMGWEEFLVFLPELDWRKAQELATDLCSDVARLRFE 190

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           I     I ++IS G+AE      I   I  ADQA   AK  GRNR  
Sbjct: 191 IDE-HEIDVSISIGLAEHDAANTIDGAIQAADQAPLKAKADGRNRWR 236


>gi|218230789|ref|YP_002368334.1| sensory box/GGDEF family protein [Bacillus cereus B4264]
 gi|218158746|gb|ACK58738.1| sensory box/GGDEF family protein [Bacillus cereus B4264]
          Length = 828

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 94/205 (45%), Gaps = 10/205 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           IL   +++V I I       Y+    +  +      I+ L+  D ++ + N   F   L 
Sbjct: 361 ILFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELD 420

Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     +K  +++ D++ FK IND   H +GDKV+  ++ +        + + R+G
Sbjct: 421 RSIKRAQKTQDKFGLLYIDLNRFKTINDTLSHSIGDKVLKEVAKRFRTCLSPTIPLARIG 480

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           G+EFA      +EQ+   L   L +I E  +  + +  S ++++S GIA         +T
Sbjct: 481 GDEFAIIVHNQTEQQLLDLCKTLFRITE--EPFVVNQHSFYLSLSIGIAVYPFGGINTTT 538

Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260
           ++  AD A+Y AK+ G N V  + +
Sbjct: 539 LLQHADIAMYSAKEKGNNAVCMYDE 563


>gi|184156874|ref|YP_001845213.1| EAL domain-containing protein [Acinetobacter baumannii ACICU]
 gi|183208468|gb|ACC55866.1| EAL domain protein [Acinetobacter baumannii ACICU]
          Length = 684

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 117/246 (47%), Gaps = 16/246 (6%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI 85
            F +  ++   +   T +   NI   ++  + +     +L+  + LV   + ++  +  +
Sbjct: 178 AFAVMMTLSIMVMHYTALISTNITDKFV--SQYQAEHDLLLFTIILVTCLVLVASFIVAV 235

Query: 86  SGSILK----ELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SY-NEKLSIVFF 134
               L     EL  +   ++ LS  D L+ L N    +           Y ++K++ ++ 
Sbjct: 236 LEQRLNQRNLELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSDHRYKDQKIAFLYI 295

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK +ND FGH +GD+++  ++++L         + R+GG+EF   A  +  +EA  
Sbjct: 296 DLDRFKSVNDAFGHHIGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLIAENTDTEEAMQ 355

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           LA  +  +I++S     SG  I+I+ S GIA    H + +  ++  AD A+ ++K+ GRN
Sbjct: 356 LAEKVLHLIQDS--YQISGKEINISASLGIALFPEHGQNVQDLLMNADAAMLMSKEQGRN 413

Query: 254 RVVCFS 259
               FS
Sbjct: 414 TYTVFS 419


>gi|218246869|ref|YP_002372240.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8801]
 gi|218167347|gb|ACK66084.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8801]
          Length = 481

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 11/181 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139
             + +EL     ++ +L+ +D L+ + N   F          L    + +S++  DIDYF
Sbjct: 296 QKMNQELHELNTKLHRLANLDGLTEVANRRCFDDCLEQEWRRLSREEKPISLILGDIDYF 355

Query: 140 KQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           K+ ND +GH  GD  +  ++  L   V      V R GGEEFA     +    A  +A  
Sbjct: 356 KRFNDTYGHLQGDDCLKQVAKALSKGVHRPADLVARFGGEEFAVLLPNTPAFGAMQVAQK 415

Query: 199 LRKIIENSQINISSGP-SIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255
           + + I   QI   +     ++T+S G+A        P  T+I  AD  L+ AK  GR+R 
Sbjct: 416 ILEEIRQLQIPHKASQAKPYVTMSLGVATVIPSLDLPPKTLIDTADGYLFQAKNQGRDRA 475

Query: 256 V 256
           +
Sbjct: 476 I 476


>gi|217973612|ref|YP_002358363.1| diguanylate cyclase [Shewanella baltica OS223]
 gi|217498747|gb|ACK46940.1| diguanylate cyclase [Shewanella baltica OS223]
          Length = 341

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 95/209 (45%), Gaps = 12/209 (5%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKE------LFISYNRISQLSRIDCLSGL 112
           + +E +L    SLV  S  I     + +G + K       L     +  +    D L+G 
Sbjct: 128 FSVEQVLDLVRSLVKESDNIRSSTEFFTGQLQKAQTEIDALKKKLEQTEKDVLYDALTGC 187

Query: 113 LNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N  AF S     L        ++  DID+FK  ND +GH +GD+V+  ++ +L      
Sbjct: 188 FNRRAFDSDFAGMLAQAPLGTCLILADIDHFKVFNDTYGHQLGDQVLRAVAKRLQESCRD 247

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITISAGIAE 226
              + R GGEEF      S  + A  LA  +R+ +E   + +      I +I+ S G+A+
Sbjct: 248 GAKLYRFGGEEFVIIVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDERINNISASFGVAQ 307

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRV 255
              K+    +I  AD+ LY AK+ GRNRV
Sbjct: 308 WQEKQTGMQLIEAADKLLYDAKRLGRNRV 336


>gi|170727362|ref|YP_001761388.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Shewanella woodyi ATCC 51908]
 gi|169812709|gb|ACA87293.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella woodyi ATCC 51908]
          Length = 1441

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 90/184 (48%), Gaps = 7/184 (3%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQIND 144
            S +    +    + +L+  D L+ L N S+ + +LG     +   +++  D+D FK+IND
Sbjct: 990  SDISRRKLQEEELRKLTNNDLLTNLPNRSSLMVTLGNLVKRDTHHTLMVLDLDNFKKIND 1049

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
            + GH +GD+++  ++ ++         + RLGG+EFA     +     +A++AN++    
Sbjct: 1050 SMGHQIGDELLIKVAKRIEAAVPYHTSIYRLGGDEFAILVDNNPDIGSSAVIANNVIDAF 1109

Query: 204  ENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDIE 262
              S   ++S   + + +S GI      +     ++ +AD A+Y AK  G NR   +S+  
Sbjct: 1110 A-SPFELTS-EKVVVGLSIGIVLYPEDDQNEQALLRKADIAMYHAKSGGGNRYQFYSESI 1167

Query: 263  NNTC 266
            N   
Sbjct: 1168 NRNA 1171


>gi|160875204|ref|YP_001554520.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160860726|gb|ABX49260.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|315267397|gb|ADT94250.1| diguanylate cyclase [Shewanella baltica OS678]
          Length = 325

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 113/257 (43%), Gaps = 23/257 (8%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           I+ C+E   +     +  ++  IFF +F      I +     I L     +  + VE++ 
Sbjct: 80  IFSCYEIGYKGLIYISPTVF--IFFFLFNLKSSLILSTLYACISL-----VSALQVESVE 132

Query: 71  LVI---ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           LV+   ++    ++   I   I+ +   +   +  L+  D L+G LN     + L     
Sbjct: 133 LVLRFSVATFDCIIFAAIFAHIINKQRQA---LVHLANTDELTGALNRKQLKTKLEQSVY 189

Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                    S++  DID+FK +NDNFGH +GD+++   S  +         + R GGEEF
Sbjct: 190 EYQQQQIPASLLLIDIDFFKTVNDNFGHIIGDQLLNKFSQHIQKKIRKDDLLFRFGGEEF 249

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                 +  + AAI+A DLR+ IE             +T S G+A+    + + T +   
Sbjct: 250 LILLPNTQFESAAIVAEDLRRSIEEQHF---LDQHTQVTCSIGVADLRQADTLDTWLKTC 306

Query: 241 DQALYVAKKSGRNRVVC 257
           D  LY AK +GRN VV 
Sbjct: 307 DNLLYSAKNAGRNCVVA 323


>gi|325124519|gb|ADY84042.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 684

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 66/265 (24%), Positives = 127/265 (47%), Gaps = 16/265 (6%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIG--LTPFYGLEYILV 66
           L+  L ++         T  I FS+  ++ I  + + A I        ++ +     +L+
Sbjct: 157 LAFLLAYKLKDTERYRLTLKIAFSVMMTLSIMGMHYTALIATNITDKFISQYQAEHDLLL 216

Query: 67  ENLSLVI-ISITISLLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
             + LV  + +  S ++  +   + +   EL  +   ++ LS  D L+ L N    +   
Sbjct: 217 FTIILVTCLVLVASFIVAMLEQRLTQQNLELRKANKELANLSIQDNLTKLPNRLYLVDYA 276

Query: 123 G------SY-NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   Y ++K++ ++ D+D FK +ND FGH VGD+++  ++++L         + R+
Sbjct: 277 EVLLSDHRYKDQKIAFLYIDLDRFKSVNDAFGHHVGDQLLIQMANRLHWQLNEKCKLLRI 336

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPIS 234
           GG+EF   A  ++  EA ILA  + ++I+ S     SG  I+I+ S G+A    H + + 
Sbjct: 337 GGDEFLLIAENTNADEAVILAEKVLQLIQES--YQISGKEINISASLGVALFPEHGQNVQ 394

Query: 235 TIIYRADQALYVAKKSGRNRVVCFS 259
            ++  AD A+ ++K+ GRN    FS
Sbjct: 395 DLLMNADAAMLMSKEQGRNTYTIFS 419


>gi|323138179|ref|ZP_08073252.1| diguanylate cyclase [Methylocystis sp. ATCC 49242]
 gi|322396641|gb|EFX99169.1| diguanylate cyclase [Methylocystis sp. ATCC 49242]
          Length = 254

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 79/260 (30%), Positives = 119/260 (45%), Gaps = 24/260 (9%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIG--LTPFYGLEYIL 65
           F SIW   E      +    ++Y +I  S+        A +  + +G  L P  G+  ++
Sbjct: 2   FASIWRVKEPRTRRDALRLVLLYAAISVSVSALVTAAFARMNGWPLGPALIPAIGIPLLV 61

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
              ++  + S  +              L      + +L+RID LSG LN          +
Sbjct: 62  APWMTWTVASAAL-------------RLHEMRQELERLARIDPLSGALNRRGLAEFAARH 108

Query: 126 ------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF-VGRLGGE 178
                 + K   +  D+D FK IND FGH  GD VIA ++D + ++ GT    VGR GG+
Sbjct: 109 FAERRESGKFCAIVADVDRFKTINDAFGHAAGDAVIARVADIMRLIVGTRDCAVGRFGGD 168

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTII 237
           E  A  +G S +E  ILA +LR  IE + I +     I +T S G+A           ++
Sbjct: 169 ELGALIVGLSLEETMILAENLRAAIERT-IFLHGDRRIPVTTSIGVAAVDVDDATPEAML 227

Query: 238 YRADQALYVAKKSGRNRVVC 257
            RADQ+LY AK++GRNRV  
Sbjct: 228 NRADQSLYAAKEAGRNRVRA 247


>gi|291614461|ref|YP_003524618.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans
           lithotrophicus ES-1]
 gi|291584573|gb|ADE12231.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans
           lithotrophicus ES-1]
          Length = 581

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/203 (24%), Positives = 93/203 (45%), Gaps = 12/203 (5%)

Query: 64  ILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS- 121
           I +E LS+  +      ++  +   S + +  +    ++  ++ D L+GL N   F    
Sbjct: 380 IYLEKLSIYTLKDAQGKVVNRVGVFSDITQSRVEQETVAHHAQHDFLTGLPNRLLFRDRF 439

Query: 122 ------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                    Y++K ++++ D+D FK +ND  GH VGD ++  ++D+L         V R 
Sbjct: 440 NQQLALAKRYSKKFAVMYIDLDRFKPVNDTLGHQVGDLLLMAVADRLKSQVREIDTVSRF 499

Query: 176 GGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PI 233
           GG+EFA       ++++   LA  +   ++     +    +++I+ S GIA        +
Sbjct: 500 GGDEFAILVSEVVTQRDVTALAEKILAALKA--PFVLENHTVNISGSLGIAIYPDDGMDM 557

Query: 234 STIIYRADQALYVAKKSGRNRVV 256
            TI+  AD A+Y AK  G N   
Sbjct: 558 ETILSNADTAMYKAKHKGANTYC 580


>gi|229020829|ref|ZP_04177538.1| Sensory box/GGDEF [Bacillus cereus AH1273]
 gi|229027422|ref|ZP_04183670.1| Sensory box/GGDEF [Bacillus cereus AH1272]
 gi|228733883|gb|EEL84629.1| Sensory box/GGDEF [Bacillus cereus AH1272]
 gi|228740454|gb|EEL90743.1| Sensory box/GGDEF [Bacillus cereus AH1273]
          Length = 805

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 93/200 (46%), Gaps = 10/200 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE- 127
           +++V I I       Y+    +  +    + I+ L+  D ++ + N   F   L    E 
Sbjct: 341 VTIVPIMIEGQTFGSYVMVKDITRMKKQQDEINYLAFHDTVTEIGNRIFFQQELEKSIEH 400

Query: 128 ------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                 +  +++ D++ FK IND  GH +GD V+  ++ +        + + R+GG+EFA
Sbjct: 401 ARKTQGEFGLLYIDLNRFKTINDTLGHSIGDSVLKEVAKRFRTCLSPAIPLARIGGDEFA 460

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRA 240
                 +EQ+   L   L +I E  +  + +  S ++++S GIA         +T++  A
Sbjct: 461 IIVHNHTEQQLLDLCETLFRITE--EPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHA 518

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D A+Y AK+ G N V  + +
Sbjct: 519 DIAMYSAKEKGNNAVCMYDE 538


>gi|168186514|ref|ZP_02621149.1| putative ggdef domain protein [Clostridium botulinum C str. Eklund]
 gi|169295530|gb|EDS77663.1| putative ggdef domain protein [Clostridium botulinum C str. Eklund]
          Length = 1801

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/161 (37%), Positives = 83/161 (51%), Gaps = 11/161 (6%)

Query: 106  IDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            ID L+G          L          N+K SI+ FD+D FK +ND FGH VGDKV+  +
Sbjct: 1467 IDKLTGAYTRKYLEDKLSESIEYANLNNDKFSIIMFDLDNFKNVNDTFGHQVGDKVLNNV 1526

Query: 159  SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
             + ++         GR GGEEF A      E EA  +A  +R  +ENS+I    G    +
Sbjct: 1527 CNIVMKNLREGDICGRYGGEEFIAILPRIGENEALNIAERIRVAVENSEI---LGEKNPV 1583

Query: 219  TISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCF 258
            TIS GI+    +  +   +I +ADQALY+AK SGRNR   +
Sbjct: 1584 TISIGISTYPKQAQLKRELIEKADQALYMAKDSGRNRCKVW 1624


>gi|262169201|ref|ZP_06036894.1| sensory box/GGDEF family protein [Vibrio cholerae RC27]
 gi|262022482|gb|EEY41190.1| sensory box/GGDEF family protein [Vibrio cholerae RC27]
          Length = 308

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 11/180 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            + + ++     ++ QL+  D L+ L N            +      + LS +  DID F
Sbjct: 127 STDITDIVELREQLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNF 186

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND FGH  GD+V+ FL+     V     F GR+GGEEF      +  + A  LA  +
Sbjct: 187 KLINDQFGHDKGDEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQI 246

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           R+          +    HI + AG++   H +  I+ I  R+DQALY AK++GRNR   +
Sbjct: 247 RQRFAEHPFFEQNE---HIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 303


>gi|16765047|ref|NP_460662.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16420232|gb|AAL20621.1| putative PAS/PAC domain protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|261246894|emb|CBG24711.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267993641|gb|ACY88526.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158230|emb|CBW17729.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912693|dbj|BAJ36667.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|332988590|gb|AEF07573.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 660

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSESLIRTADTAMYNAKEGGRGQFC 390

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 391 VFSPEMNQ 398


>gi|330964101|gb|EGH64361.1| response regulator/GGDEF domain-containing protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 334

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+GL N   F   L            +LS++  D+DYFK  N
Sbjct: 156 QQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRATRDQAQLSLLMIDVDYFKAYN 215

Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DNFGH  GD+ +  ++  +            R GGEEFA     +S   A +LA  LR+ 
Sbjct: 216 DNFGHLEGDEALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQS 275

Query: 203 IENSQI-NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVC 257
           +   +I +I+  P   +T+S GIA    +  +    +I  AD+ LY+AK +GRN+V  
Sbjct: 276 VAGMKIPHIAPVPGSSLTVSIGIATVTPQVGLHSRQLILDADKGLYLAKNNGRNQVAA 333


>gi|329912810|ref|ZP_08275818.1| putative transmembrane protein [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545522|gb|EGF30714.1| putative transmembrane protein [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 657

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 11/177 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            +  L +  N++  L+R D L+GL N + F   L             ++++F DID+FK 
Sbjct: 480 DITTLKLVENQLRVLARHDTLTGLPNRNQFDEKLAEAMARSRRSGHAMALMFLDIDHFKS 539

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLR 200
           IND  GH  GD+V+   + +L+        V RL G+EF     G    +E++ +A  + 
Sbjct: 540 INDTLGHHSGDEVLCEFARRLLHSVRQTDTVSRLAGDEFVIILEGLQLPEESSKVAAKII 599

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             + ++  +I  G    I+ S GIA  + +    S ++ RAD+ALY AK +GRN   
Sbjct: 600 SAM-STDFDIL-GVPRRISTSIGIAVGKINDNNGSALLRRADEALYAAKAAGRNTFR 654


>gi|294828214|ref|NP_713112.2| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
 gi|293386064|gb|AAN50130.2| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
          Length = 306

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 92/206 (44%), Gaps = 31/206 (15%)

Query: 82  LGYISGSILKELFISYNRISQLSR--------------IDCLSGLLNHSAFISSL----- 122
           L Y++G  + E   +  +ISQL+                D L+ L N  AF + L     
Sbjct: 105 LVYVTGRDITETIEANRQISQLATELKEANDLLFEQATTDPLTKLKNRRAFTNDLHSLLR 164

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   LS++  D+D+FK  ND FGH  GDKV+  L+  L     +   +GR GGEEF
Sbjct: 165 FMQQEKSFLSLLMIDVDHFKTYNDQFGHLAGDKVLVCLAKVLENTLRSNDLLGRFGGEEF 224

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-----KEPIST 235
            AA   + E+++  +   L   +        S     ITIS GI+             + 
Sbjct: 225 VAALPNTCEKKSIEIGERLVNAVREFNWEYRS-----ITISVGISTSDFEKKQLDVDSTN 279

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDI 261
           +I +AD+ALY +K +GRN+    S I
Sbjct: 280 LIEKADKALYQSKVNGRNKATHSSQI 305


>gi|227115159|ref|ZP_03828815.1| putative signaling protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 235

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/181 (33%), Positives = 92/181 (50%), Gaps = 11/181 (6%)

Query: 86  SGSILKELFISYNRISQLS-------RIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDI 136
           S    KEL     +++QL+         D L+G+ N  A I  +    E+   +++  DI
Sbjct: 56  SDRAEKELNRLNAQLNQLAVELEYKASHDPLTGVYNRGAIIERINHALERNQAALIVLDI 115

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FKQ+ND +GHP GD VI  L  ++  V  T   +GR+GGEEF     G++  +A  LA
Sbjct: 116 DHFKQVNDTYGHPTGDAVICDLVSRVQNVLNTTSSIGRVGGEEFTILLEGNTLMQAVSLA 175

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + L + +    +++   P   +T S G++    K     +   AD ALY AK+ GRNRV 
Sbjct: 176 SRLHQDLNRMPLSVL--PQQRVTASFGVSWAPQKTRFDALYGAADAALYQAKEKGRNRVE 233

Query: 257 C 257
            
Sbjct: 234 F 234


>gi|197337245|ref|YP_002157867.1| sensory transduction/ ggdef family protein [Vibrio fischeri MJ11]
 gi|197314497|gb|ACH63946.1| sensory transduction/ ggdef family protein [Vibrio fischeri MJ11]
          Length = 411

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 63/209 (30%), Positives = 94/209 (44%), Gaps = 16/209 (7%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           G T ++ L   +++   L  I  +I           + E +    +I   +  D L+GL 
Sbjct: 209 GQTRYFQLFESVIDWGDLPAIQTSII---------DVTEKYHLERQIEYQASHDYLTGLF 259

Query: 114 NHSAFISSLGS---YNEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
           N  A    L      ++  S   +  DID FK IND FGH  GD+VI   ++    V G 
Sbjct: 260 NRRAITEKLNHNINSHDCCSEICLLIDIDNFKWINDQFGHASGDEVIVRFANLCKKVVGE 319

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
              VGR GGEEF       + Q+A  +A  + K  E      S    I IT S GI++  
Sbjct: 320 SGIVGRWGGEEFIVFLSNHNLQQAKAIATTILKKCELEIYQFSDHRHI-ITASIGISQCQ 378

Query: 229 HKE-PISTIIYRADQALYVAKKSGRNRVV 256
                I ++I  AD+ +Y AK+ G+N++V
Sbjct: 379 VTSCNIESLIQTADKNMYQAKQQGKNQIV 407


>gi|86360161|ref|YP_472050.1| putative kinase/esterase protein [Rhizobium etli CFN 42]
 gi|86284263|gb|ABC93323.1| putative kinase/esterase protein [Rhizobium etli CFN 42]
          Length = 790

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 11/206 (5%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLG 123
           +++ ++I++  S+LL  +  S L EL  S     QL+  D L+ L N + F       L 
Sbjct: 296 SIAALVIAVLFSVLLVRLRSS-LGELKRSELHARQLALHDVLTDLPNRALFAMRFEECLA 354

Query: 124 SYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 E+ ++   D+D FK +ND FGH  GD++I   ++++  V      + RLGG+EF
Sbjct: 355 ETRYSTERSAVALLDLDRFKAVNDTFGHAAGDELIRMAAERIRSVLRPGDTLARLGGDEF 414

Query: 181 AAAALG--SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTII 237
           A         +Q    + + +   +      +       +  S G+            ++
Sbjct: 415 ALLLRDIRDDDQVLLSICDAIVAELGRPFPLLRGEAVARVGGSIGLTIVPDAGRTADDLM 474

Query: 238 YRADQALYVAKKSGRNRVVCFSDIEN 263
             AD ALY AK  GR +   +S   +
Sbjct: 475 RYADVALYEAKMGGRGQWRVYSPSMD 500


>gi|90424850|ref|YP_533220.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18]
 gi|90106864|gb|ABD88901.1| diguanylate cyclase (GGDEF domain) [Rhodopseudomonas palustris
           BisB18]
          Length = 392

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 67/269 (24%), Positives = 109/269 (40%), Gaps = 35/269 (13%)

Query: 24  PHTFMIYFSIFFSIFIATVI---------FIANIFLFYIGLTPFYGLEYILVE-NLSLVI 73
           P+      +  F IF A V           +  I +    L    GL +  ++ NL LV+
Sbjct: 124 PYATRYMMAAQFLIFGAAVFTALPWRLTKLMTLIAVAGFALIVSSGLRWPPLDGNLDLVV 183

Query: 74  ISITISLLLGYISGSI-----------------LKELFISYNRISQLSRIDCLSGLLNHS 116
             +T + +  Y+                       EL  + +++S LS  D L+G+ N  
Sbjct: 184 FCLTTTAIALYLRRRKDLQLAEIINLRKLDSSHASELRDANHKLSLLSHTDPLTGVFNRR 243

Query: 117 AFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
                +         N    ++  D+D+FK +ND  GH  GD+ +  ++  +     +  
Sbjct: 244 YLDRLVDQLAISIAPNAGYGLLMIDVDHFKFLNDRCGHLHGDQCLRLIATAIQRSLRSSD 303

Query: 171 F-VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAGIAERC 228
             V R GGEEFA     +   E   +A  LR  I   +I     GP   +++S G     
Sbjct: 304 DAVIRYGGEEFAVVLPDADLFETMQVAEGLRAAIGALRIPNPGLGPEAFVSVSIGAYSAT 363

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             E ++  +  ADQALY AK++GR+RV  
Sbjct: 364 TAEDVTDSLRCADQALYCAKQAGRDRVFV 392


>gi|320333630|ref|YP_004170341.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Deinococcus maricopensis DSM 21211]
 gi|319754919|gb|ADV66676.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Deinococcus maricopensis DSM 21211]
          Length = 874

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 81/184 (44%), Gaps = 11/184 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144
           E      +++  +  D L+GL N    +       +        ++++  D+D FK++ND
Sbjct: 424 ERVTLQTQLTHQATHDPLTGLPNRRHLLTLIEGALARADREGTGVAVLLLDLDRFKRLND 483

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKII 203
             GH  GD  +  ++++L  V  +   + RLGG+EF     G S   +A++  + L  ++
Sbjct: 484 TLGHAAGDAFLRVIAERLRGVVRSSDHIARLGGDEFVIVLEGLSAPDQASVFTSRLLDVL 543

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             + I +     +  T S GI+           ++  AD A+Y AK  G+N    ++   
Sbjct: 544 R-APITLGEQQFVT-TASVGISLFPQDARTPEELLRTADLAMYTAKHDGKNGHAAYAPSA 601

Query: 263 NNTC 266
           ++  
Sbjct: 602 HDAA 605


>gi|259415572|ref|ZP_05739493.1| diguanylate cyclase/phosphodiesterase [Silicibacter sp. TrichCH4B]
 gi|259348802|gb|EEW60564.1| diguanylate cyclase/phosphodiesterase [Silicibacter sp. TrichCH4B]
          Length = 700

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 107/248 (43%), Gaps = 32/248 (12%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVIISIT------ISLLLGYISGSI-------- 89
           FI+ I +F +  + F G    LV +L+ +  ++           + Y+            
Sbjct: 183 FISMIVIFLVAGSTFIGFGSQLVRSLTQLAAAMERIRSGDFDTPVSYVDRRDEVGKIARG 242

Query: 90  -------LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFD 135
                  L++L  +  RI  L+  D L+ L N  A    L        S   +++++  D
Sbjct: 243 VAAFSYTLRDLSAAKTRIEHLALHDQLTNLPNRRALQEYLEHCFDLAPSSEHRVAVLHVD 302

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAI 194
           +D FKQIND  GH  GD+++   +  +    G      R+GG+EF      + ++ +   
Sbjct: 303 LDRFKQINDLMGHAAGDEILRHAARAMQQQIGADDLTARVGGDEFVIVLRQAGTDAQVEC 362

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253
           +AN + + +    I I  G  +H+  S GIA     E   + I+  AD ALYVAK  GR 
Sbjct: 363 IANRIIEAVSQ-PIEIW-GDFVHVGASVGIAFLMAGETDPARILSNADIALYVAKSKGRG 420

Query: 254 RVVCFSDI 261
           R   ++D 
Sbjct: 421 RASFYNDA 428


>gi|193782538|ref|NP_435318.2| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021]
 gi|307300730|ref|ZP_07580505.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti
           BL225C]
 gi|307319141|ref|ZP_07598571.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83]
 gi|193072994|gb|AAK64730.2| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021]
 gi|306895248|gb|EFN26004.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83]
 gi|306904264|gb|EFN34849.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti
           BL225C]
          Length = 733

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 62/264 (23%), Positives = 112/264 (42%), Gaps = 14/264 (5%)

Query: 12  WLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL 71
           +L H  +   F    F +   +      A ++  +   + Y    PF     ++     +
Sbjct: 208 FLTHLGDDYGFEDLRFSVLPELGRQRSYAPIVSSSRETIGYFSWLPFRPGADVMKATAPV 267

Query: 72  VIISITISLLLG----YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
           ++++  +   L      +     + L  S   +  L+R D L+GL N ++F   L     
Sbjct: 268 LLVAGALLFALTSALSVVLRRRSRRLQESQAELDHLARHDPLTGLANRASFNRLLARVVA 327

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
               ++  ++++ D+D FKQ+ND  GHPVGD+++  ++ +L         + R+GG+EF 
Sbjct: 328 TSTIDQANALLYLDLDRFKQVNDTLGHPVGDRLMVEVAKRLKETA-AGAAISRIGGDEFT 386

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRA 240
                + + E   L + L   I   +     G  I I +S G+A     +     I  +A
Sbjct: 387 IIVARTRQDEVEKLCDALIAAIR--RPFEIDGQPILIGLSIGVAVATGNDADPIEITRKA 444

Query: 241 DQALYVAKKSGRNRVVCFSDIENN 264
           D ALY AK +GRNR   F    + 
Sbjct: 445 DIALYHAKSAGRNRYAVFGPHMDE 468


>gi|188991547|ref|YP_001903557.1| Putative c-di-GMP phosphodiesterase or signal transduction protein
           [Xanthomonas campestris pv. campestris str. B100]
 gi|167733307|emb|CAP51506.1| Putative c-di-GMP phosphodiesterase or signal transduction protein
           [Xanthomonas campestris pv. campestris]
          Length = 760

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 81/184 (44%), Gaps = 12/184 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           E      R+ QL+  D L+GL N   F +             E  +++F +ID FK IND
Sbjct: 322 EREQIRQRVHQLAFYDALTGLPNRIMFSARAEQALTHAEYAGEPAALMFINIDRFKLIND 381

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH  GD ++  ++ ++         + RL G+EFA A    S ++A+  A  L   I 
Sbjct: 382 SQGHAAGDGLLRDIALRIGEQLTATAMLARLAGDEFALALPQCSAEQASATAERLLGTIA 441

Query: 205 NSQINISSGP-SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
                +  G  ++H + S G+A        I+ ++  AD A+  AKK G  R   FS   
Sbjct: 442 G---PLPVGHMTVHPSASIGVAMFPEDGRDINILLRHADLAMNRAKKEGGGRFRFFSADM 498

Query: 263 NNTC 266
           N   
Sbjct: 499 NRMA 502


>gi|156933762|ref|YP_001437678.1| RNase II stability modulator [Cronobacter sakazakii ATCC BAA-894]
 gi|156532016|gb|ABU76842.1| hypothetical protein ESA_01588 [Cronobacter sakazakii ATCC BAA-894]
          Length = 664

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 91/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A +  +        + ++ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRVLANTDAITGLPNRNAILDMISDAIAKRGDTQVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + RLGG+EF   A  +S+     +++ + 
Sbjct: 279 KVNDAYGHMFGDQLLQAVSLAILSCLEKDQVLARLGGDEFLVMATDTSQAALEAMSSRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             I   +     G   ++   S GIA    H E   ++I  AD A+Y AK++GR +   F
Sbjct: 338 --ISRLKHPFRIGLIEVYTGCSLGIALAPQHGEDRESVIRNADTAMYTAKENGRGKFCVF 395

Query: 259 SDIENN 264
               N 
Sbjct: 396 CPEMNQ 401


>gi|87119403|ref|ZP_01075301.1| GGDEF domain protein [Marinomonas sp. MED121]
 gi|86165794|gb|EAQ67061.1| GGDEF domain protein [Marinomonas sp. MED121]
          Length = 410

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/209 (25%), Positives = 92/209 (44%), Gaps = 11/209 (5%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           ++     L   S  +  +L ++   I+K    +   I   +  D L+ L+N   F     
Sbjct: 202 VIRSTFILNTSSFILGAILLFMIHRIMKSRDAATQEIHYFAHFDPLTKLINRRYFFELFD 261

Query: 124 SYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
              +        L +   D+D FK +ND  GH  GDK +   ++ L  V      VGR G
Sbjct: 262 QALDEQNNTKPPLQLCICDLDQFKGVNDTLGHQAGDKALIKFAEILSEVMTNQGIVGRFG 321

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE----P 232
           G+EF    +  S QE   L   +R  +E +   + +  S  IT + G+A     +     
Sbjct: 322 GDEFVICFIDKSRQECENLLETIRARLEKTVFTLDNASSFSITGTFGVAHLEGGQKTKLS 381

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           ++ +   AD+ALY+AK++GRN+V   ++ 
Sbjct: 382 MNHLFETADKALYIAKQNGRNQVCLLNEA 410


>gi|115524099|ref|YP_781010.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
 gi|115518046|gb|ABJ06030.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
          Length = 928

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 12/211 (5%)

Query: 62  EYILVENLSLVIISITISLLLG--YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
            Y+L       I S+T  L  G   +    + +  +   RI+ ++  D L+ L N   F 
Sbjct: 456 RYLLETGDGRSIESVTKPLPTGGWLVMTEDVTQRRLYDERIAHMAHYDALTDLPNRVLFH 515

Query: 120 SSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
             L S       +++L++ + DID FK +ND+ GH +GD+++  ++D+L        F  
Sbjct: 516 ERLESALDAREPDDQLAVFYIDIDQFKSVNDSLGHSIGDELLKIVADRLRGCLAATDFAA 575

Query: 174 RLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EFA      ++  +   L   +   I   +    +G  +    S GIA    H  
Sbjct: 576 RIGGDEFAIIQTAVAKATDTTDLVERIYAAIR--KPYDCAGHLLTADASIGIALAPQHGA 633

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            +  ++  AD A+Y AK  GR     F    
Sbjct: 634 NLDQLLKNADLAMYGAKAEGRRTYRFFEPAM 664


>gi|172061315|ref|YP_001808967.1| diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria
           MC40-6]
 gi|171993832|gb|ACB64751.1| diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria
           MC40-6]
          Length = 779

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 97/208 (46%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVIISITISLLLGYISGS--ILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +Y    N+ L++ S     +L + S +  ++ +L      ++QL+  D L+GL N  A +
Sbjct: 291 DYSHTRNVYLLMTSFITLAMLAFFSVATGLIGKLLGREREMTQLAEYDLLTGLANRYATL 350

Query: 120 SSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
             L       +   +L ++F D+D FK +ND  GH  GD V+   + +L    G    + 
Sbjct: 351 RGLRNDVSMPASLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTASRLSDAVGDEGSLA 410

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EF     G   E+ A  LA  + ++    +     G S  +  S GIA      E
Sbjct: 411 RIGGDEFVVVMKGDDIERRAVRLAEAIIRMF--GEPFDVRGSSFVLHASIGIALHSVANE 468

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +AD A+Y AK +G+N    ++
Sbjct: 469 SEIDLLKKADLAMYSAKDAGKNCYQFYA 496


>gi|126669004|ref|ZP_01739941.1| sensory box protein [Marinobacter sp. ELB17]
 gi|126626520|gb|EAZ97180.1| sensory box protein [Marinobacter sp. ELB17]
          Length = 664

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/200 (28%), Positives = 87/200 (43%), Gaps = 16/200 (8%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           I I+ L   ++     EL      I Q +  D L+GL N       L          N+ 
Sbjct: 304 IAIASLCDDVTVRKQSELI-----IWQQAHYDSLTGLANRKMANDKLEQAIKVADRSNKS 358

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-S 187
           ++ +F D+D FK IND  GH  GD ++  +S +L   F     + R GG+EF     G  
Sbjct: 359 IAFLFLDLDLFKHINDTQGHDFGDMLLVEVSKRLRSYFREIDTLARFGGDEFVIIVGGLD 418

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYV 246
           S  +  ++A+DL K +   +       ++HI+ S GI            I+  ADQA+Y 
Sbjct: 419 SPDQVDLIASDLVKKMA--EPFKVGQETVHISTSVGITIYPQDASDPVEILRHADQAMYA 476

Query: 247 AKKSGRNRVVCFSDIENNTC 266
           AK +G NR   F+     + 
Sbjct: 477 AKNNGGNRFQYFTPWMQQSA 496


>gi|117920878|ref|YP_870070.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117613210|gb|ABK48664.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 726

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +L I+  ++  ++  D L+ L N                   + +++V  D+D+FK++ND
Sbjct: 545 DLEIANRKLKDMAERDSLTNLYNRRYTEKQFLKIQDLCERGQDAIAVVLLDLDFFKKVND 604

Query: 145 NFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD+ +  +++ L   F      + R GGEEF       +  +     N  R+ +
Sbjct: 605 TYGHLAGDECLRVMAEVLTSHFKRDVDLLCRYGGEEFVLILPMCNTLKVEQHLNGFREKL 664

Query: 204 ENSQI-NISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +  I N +   +  +T+S G  IA+  +   +   + +AD+ LY AK+ GRN VVC
Sbjct: 665 ASVVITNPADQVTFSVTVSIGAIIADAAYSSTLEVWLKQADENLYKAKEQGRNCVVC 721


>gi|307137662|ref|ZP_07497018.1| putative diguanylate cyclase [Escherichia coli H736]
          Length = 264

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 66/255 (25%), Positives = 120/255 (47%), Gaps = 26/255 (10%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGL--TPFYGLEYI----LVENLSLVIISITISLL 81
           M++ + + +I I   + + ++ L++ GL    + G+  I    ++ N+SL+ +S   S+ 
Sbjct: 1   MVWKASYVTIMIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMS-RYSVS 59

Query: 82  LGYISGSI------------LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GS 124
             YIS +I            +  +F +      ++  D L+ + N + F + L      +
Sbjct: 60  TWYISRTIEVVSKLTVMVIFMCHIFSALRVTKNIAHRDPLTNIFNRNYFFNELTVQSASA 119

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
                 ++  DID+FK++ND  GHPVGD+VI  + + +         + R+GGEEF    
Sbjct: 120 QKTPYCVMIMDIDHFKKVNDTRGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFGVLL 179

Query: 185 LGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYRADQ 242
                + A  LA  +R+ +E    +         +TIS G +  + +    + I   AD 
Sbjct: 180 TDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRLADN 239

Query: 243 ALYVAKKSGRNRVVC 257
           ALY AK++GRN+VV 
Sbjct: 240 ALYEAKETGRNKVVV 254


>gi|237730295|ref|ZP_04560776.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226905834|gb|EEH91752.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 462

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 98/201 (48%), Gaps = 13/201 (6%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------I 119
           E +SL+     +S  + ++  S+   L    N        D L+ LLN           I
Sbjct: 268 ERMSLLQDVRQLSAKIHFLLASMFDALVKQEN------GKDSLTQLLNRRFIPTIMRREI 321

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
           S      +  ++   DIDYFKQINDN+GH  GD  +  ++  +     +  +V R GGEE
Sbjct: 322 SLALHARKPFTLAMLDIDYFKQINDNYGHNTGDMTLKNVAAVIYDHIRSSDYVFRYGGEE 381

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F    + S + +A+I+   LR  I    +  S+  S  IT+S GIAE  +      ++ +
Sbjct: 382 FMILLVESDKSQASIILETLRMKIAEMCMAASAAESFSITVSIGIAEYDYHPDYKQLVDK 441

Query: 240 ADQALYVAKKSGRNRVVCFSD 260
           AD+ALY+AK +GR+R+  + +
Sbjct: 442 ADRALYLAKSNGRDRIEVYQE 462


>gi|212704840|ref|ZP_03312968.1| hypothetical protein DESPIG_02907 [Desulfovibrio piger ATCC 29098]
 gi|212671802|gb|EEB32285.1| hypothetical protein DESPIG_02907 [Desulfovibrio piger ATCC 29098]
          Length = 533

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 6/181 (3%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148
            L    +  S++S +D L+G+ N  A    L       + +S++  D+D FK  ND  GH
Sbjct: 345 RLEEEKDAYSRMSLMDSLTGIPNRRALDMRLADLAELRQTVSLIMLDVDLFKIYNDTLGH 404

Query: 149 PVGDKVIAFLSDQLVVVFGTPMF-VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
             GD  +  ++  +          + R GGEEFA    G   + A  +A  LR+ +E   
Sbjct: 405 QEGDACLHRVAQAMRDGLRGGDREIFRYGGEEFAVVLDGVPPEHALHVAERLRQAVEQLG 464

Query: 208 INISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           I     P+  +TIS G+A      P  +  ++  AD ALY AK+ GRNRV    +I   +
Sbjct: 465 IPHPGSPAGRVTISLGVAAVGELTPEILPRLLETADSALYSAKEHGRNRVHLAGEIVKKS 524

Query: 266 C 266
            
Sbjct: 525 A 525


>gi|205352622|ref|YP_002226423.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205272403|emb|CAR37283.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
          Length = 660

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSDSLIRTADTAMYNAKEGGRGQFC 390

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 391 VFSPEMNQ 398


>gi|218439029|ref|YP_002377358.1| diguanylate cyclase [Cyanothece sp. PCC 7424]
 gi|218171757|gb|ACK70490.1| diguanylate cyclase [Cyanothece sp. PCC 7424]
          Length = 620

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 65/250 (26%), Positives = 117/250 (46%), Gaps = 24/250 (9%)

Query: 28  MIYFSIFFSIFIATVIFIANI-------FLFYIGLTPFYGLEYILVENLSLV--IISITI 78
           +I  ++ F   I+ VI+++ +        L Y  L     LE  ++E  + +  + S   
Sbjct: 375 IIAIAVSFIGLISLVIYLSGLNRKLNHARLAYSELNA--SLETKVIERTAELKEVNSRLE 432

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSI 131
           + ++        KE  I+  ++++LS ID L+ L N  +F   L             LS+
Sbjct: 433 AEIIERSQAEAEKERLIA--KLNRLSHIDNLTSLANRRSFDLYLKQEWNRHYRTQLPLSL 490

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQ 190
           +  DIDYFK++ND +GH  GD+ +  ++  L      +     R GGEEFA     +  +
Sbjct: 491 ILCDIDYFKKLNDTYGHQAGDECLKRVAKVLKKHTKRSSDLAARYGGEEFAIILPETDLE 550

Query: 191 EAAILANDLRKIIENSQINISSG-PSIHITISAGIAE--RCHKEPISTIIYRADQALYVA 247
            A  LA  ++  I++ +I  S+      ++++ G+A       + +  +I  ADQALY  
Sbjct: 551 GAIFLAESIKDNIKSLRIPNSASLVKPFVSMTFGVATMVPTQHQSLDILISLADQALYRG 610

Query: 248 KKSGRNRVVC 257
           K +GR++V  
Sbjct: 611 KNNGRDQVSV 620


>gi|126640617|ref|YP_001083601.1| hypothetical protein A1S_0546 [Acinetobacter baumannii ATCC 17978]
          Length = 657

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 100/197 (50%), Gaps = 10/197 (5%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------S 124
           LV+++  I  +L         EL  +   ++ LS  D L+ L N    +           
Sbjct: 198 LVLVASFIVAVLEQRLNQRNLELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSDHR 257

Query: 125 Y-NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
           Y ++K++ ++ D+D FK +ND FGH +GD+++  ++++L         + R+GG+EF   
Sbjct: 258 YKDQKIAFLYIDLDRFKSVNDAFGHHIGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLI 317

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQ 242
           A  +  +EA  LA  +  +I++S     SG  I+I+ S GIA    H + +  ++  AD 
Sbjct: 318 AENTDTEEAMQLAEKVLHLIQDS--YQISGKEINISASLGIALFPEHGQNVQDLLMNADA 375

Query: 243 ALYVAKKSGRNRVVCFS 259
           A+ ++K+ GRN    FS
Sbjct: 376 AMLMSKEQGRNTYTVFS 392


>gi|37680330|ref|NP_934939.1| signal transduction protein [Vibrio vulnificus YJ016]
 gi|37199077|dbj|BAC94910.1| predicted signal transduction protein [Vibrio vulnificus YJ016]
          Length = 831

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 98/211 (46%), Gaps = 18/211 (8%)

Query: 65  LVENLSLVIISITISLLLGYISGS-------ILKELFISYNRISQLSRIDCLSGLLNHSA 117
           L+    L  +S+ +S  +G              K+L  S  +++  ++ D L+ L N S 
Sbjct: 355 LLLAFVLASLSLAVSQYIGRRFNQYQKRIRTDFKKLEQSQEQLAYQAKHDSLTKLPNRSL 414

Query: 118 F-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
                   I    +  ++L+++F D+D FK++ND  GH VGD+++  + ++   +     
Sbjct: 415 LEVQIVSGIQRCRASGKQLAVMFVDLDNFKKVNDQHGHKVGDELLLRVGEKFSQLLRPGD 474

Query: 171 FVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC- 228
            V R GG+EF       SS++EA +LA  +R+ + +    I  G  +  + S G+A    
Sbjct: 475 SVARFGGDEFVFCFAELSSKEEAEMLAESVRRSLTDH--FILHGALVSTSCSVGVAMYPQ 532

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +    +I  AD  L+ +K   + +V+ + 
Sbjct: 533 DGDSADQLIANADIVLFRSKAQHKGQVMFYD 563


>gi|289644991|ref|ZP_06477029.1| diguanylate cyclase [Frankia symbiont of Datisca glomerata]
 gi|289505206|gb|EFD26267.1| diguanylate cyclase [Frankia symbiont of Datisca glomerata]
          Length = 178

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 10/177 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           I  +    +  + + +  D L+GL N   F+             +  LS    DIDYFK+
Sbjct: 2   IAYQNAQLFEEVQRHAATDQLTGLANRRHFLEQAERAVKSHAATDLPLSAAMMDIDYFKR 61

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH VGD+V+A ++ ++         +GR+GGEEFA   +      A  LA  LR 
Sbjct: 62  VNDAYGHSVGDEVLAEIARRIRSSLRGEEILGRIGGEEFAV-LMSVPASTATALAERLRA 120

Query: 202 IIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + +  +N S GP + I +S G+A    H   +  ++ RADQALY AK+ GR++V  
Sbjct: 121 AVAHRPVNTSIGP-LDIRLSIGLAHLAPHDTDLRDLLDRADQALYTAKRGGRDQVAV 176


>gi|238757007|ref|ZP_04618195.1| phosphodiesterase [Yersinia aldovae ATCC 35236]
 gi|238704837|gb|EEP97366.1| phosphodiesterase [Yersinia aldovae ATCC 35236]
          Length = 864

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 10/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++  E   S  +I  L+  D L+GL N + F       I         L+++  ++D FK
Sbjct: 421 ALAMEREQSRKQIQHLAFYDSLTGLPNRNQFQVYAKQAIVQADERGHTLAVLVINLDRFK 480

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           Q+ND+ GH  GD+++A ++ +L         +GRL G+EF      S+ Q+A +    + 
Sbjct: 481 QVNDSLGHAAGDELLAAIAQRLRNDVSKGDTLGRLSGDEFIIILAPSTMQQATLKVEKML 540

Query: 201 KIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++  SQ    +  +I  + S GI+        + T++  AD A++ AK  G      FS
Sbjct: 541 SLL--SQPCQIADMNIIPSASVGISLYPENGSDLDTLMIHADIAMHKAKNMGYGHFNFFS 598

Query: 260 DIENN 264
              NN
Sbjct: 599 AEMNN 603


>gi|218708512|ref|YP_002416133.1| sensory box/GGDEF family protein [Vibrio splendidus LGP32]
 gi|218321531|emb|CAV17483.1| sensory box/GGDEF family protein [Vibrio splendidus LGP32]
          Length = 583

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 18/192 (9%)

Query: 84  YISGSILKELFISYNRIS-------QLSRIDCLSGLLNHSAFISSLGSYNE-------KL 129
            I    + E +++  ++        +LS +D L+ + N   F   L +           L
Sbjct: 386 LIMARDITERYLAEQKLEEANLELERLSFMDSLTQVSNRRRFDEQLSTLWHHHVREKLPL 445

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSS 188
           +I+  DID+FK  ND +GH  GD  +  +S     V   +   V R GGEEF      ++
Sbjct: 446 TIMLCDIDFFKGYNDFYGHQQGDDALIQVSQAFKQVLNRSSDCVARYGGEEFGFILPNTT 505

Query: 189 EQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAER--CHKEPISTIIYRADQALY 245
            + A ++A  +   ++   + +  S  S  IT+S GI        + + + +  AD ALY
Sbjct: 506 TEGALMVARRIHDEVQKLGLAHEKSTVSDSITVSIGIVSYIPTPDDEMESAVALADSALY 565

Query: 246 VAKKSGRNRVVC 257
            AK  GRNR + 
Sbjct: 566 QAKSDGRNRSIV 577


>gi|209548193|ref|YP_002280110.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209533949|gb|ACI53884.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 1062

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 79/176 (44%), Gaps = 10/176 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL ++ NRI   S  D L+ L N      +L           +K SI+  D+D FK+IND
Sbjct: 623 ELELAKNRIEHNSLHDPLTALANRRKLDIALEELTNDGRRQRQKFSILHIDLDRFKEIND 682

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD ++   S  L         V R+GG+EF   AL   + E A L+  + +  E
Sbjct: 683 TLGHAAGDAMLVHASKVLAKNVRGSDIVARIGGDEFVILALDVGDTEMAQLSARIIE--E 740

Query: 205 NSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             Q     G S    +S G+A           ++  AD ALY AK +GRNR   F+
Sbjct: 741 MRQPIDFQGFSCRCGVSIGVALANGIHVDARKVLINADIALYRAKSTGRNRFEFFN 796


>gi|159036768|ref|YP_001536021.1| diguanylate cyclase/phosphodiesterase [Salinispora arenicola
           CNS-205]
 gi|157915603|gb|ABV97030.1| diguanylate cyclase/phosphodiesterase [Salinispora arenicola
           CNS-205]
          Length = 790

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 10/227 (4%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
            + I  +   A   L   G     G+  ++VE  +LV        L  +      + L  
Sbjct: 246 VLPILAMAGSAAYHLLQGGRFDPPGVAAVIVEVFALV----ARQYLTLHDVRRYARRLVE 301

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
                 +L+  D L+GL N    + +L        +  ++  D+D FK +ND  GH  GD
Sbjct: 302 REAHFRELAHTDALTGLANRRGLLRALHRSAARGTRCILLILDLDGFKHVNDVRGHDAGD 361

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+A +  +L    G+     RLGG+EFA    G        +   L  ++  +   +  
Sbjct: 362 AVLAEVGRRLRDTLGSGDVAARLGGDEFAVLMPG-PPAAVDQMGERLLGVL-GAAYELPE 419

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           GP + +++S G A    +  I  ++  AD AL  AK+ G+NR+  + 
Sbjct: 420 GP-VFLSVSIGTAGGTGQPDIELLLRHADLALRYAKQRGKNRIERYD 465


>gi|326794453|ref|YP_004312273.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinomonas mediterranea MMB-1]
 gi|326545217|gb|ADZ90437.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinomonas mediterranea MMB-1]
          Length = 977

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 10/185 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQI 142
            + +      +I  L+  D L+ L N   F+           +  +L++ F D+D FK++
Sbjct: 534 DITQRKQQQEQIEHLAYHDTLTHLPNRRLFLDDCQGLIRESDHTPELTVFFMDLDLFKKV 593

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRK 201
           ND  GHP+GD+++  +S++L   F     + R+GG+EFA    G     E   LA  +  
Sbjct: 594 NDTLGHPIGDQLLVAVSERLKSNFSAYGQIYRVGGDEFAMLIQGIEDISELQSLAQKIIG 653

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +  S   +     I I +S GI+         S ++  AD A+Y +K+ GRN+   F  
Sbjct: 654 AV--SSPYVIQKNHILIGVSIGISRAPIDGIDTSQLMKSADLAMYHSKEEGRNQYSFFVP 711

Query: 261 IENNT 265
             +  
Sbjct: 712 EMSQA 716


>gi|269960040|ref|ZP_06174417.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835339|gb|EEZ89421.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 778

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 76/272 (27%), Positives = 128/272 (47%), Gaps = 33/272 (12%)

Query: 22  FSPHTFMIY---------FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NL 69
            SP  ++++          ++ F I     I +  + L+   L+P   L+  L E   N 
Sbjct: 243 LSPAEYLMWNKVDKVWLELALSFGIASFCTITLIVLVLYRYVLSPVSKLDKQLREIEANK 302

Query: 70  SLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFIS----SL 122
              I  +     +G +S     + +EL   Y++   L+  D L+ L N   F       L
Sbjct: 303 RTNIEKLNSDDEIGRLSSRFFDMYEELNNIYHKTKHLAETDHLTQLANRHRFHELATHEL 362

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-------TPMFVGRL 175
              +E+L +V+ D+D FK +ND +GH +GDK++   S  +  V         +P F  RL
Sbjct: 363 ADPSEQLWVVYIDLDNFKYVNDKYGHELGDKLLQVFSRHIKNVCQKFTQQHNSPCFGARL 422

Query: 176 GGEEFAAAALGSSEQEAAI---LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
            G+EFA     +++++A I   LA++L K I N  ++ SS  S  +T S GIA+      
Sbjct: 423 SGDEFAILL-STNQKKADIPDMLASELLKPIHN--LSQSSTNSFPVTASVGIAQYPRDGA 479

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            I+ ++  AD A+Y AK+ G+N+   +S   N
Sbjct: 480 DIAKLLSSADAAMYQAKRGGKNQYAYYSAALN 511


>gi|213025743|ref|ZP_03340190.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 157

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 7/157 (4%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +S +D L+GL N     + L +     S    ++  DID+FK  ND++GH +GD+ +  +
Sbjct: 1   MSMLDPLTGLYNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRV 60

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-- 216
           S  +     +   V R GGEEF      +  Q+A   A  +R+ + + +I      S+  
Sbjct: 61  SAAIRDAVRSRDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVAT 120

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           ++T+S GIA       I   I +AD+ALY AK  GRN
Sbjct: 121 NVTVSIGIAPLT-DRNIGDAIEKADKALYEAKHLGRN 156


>gi|171317644|ref|ZP_02906829.1| diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria
           MEX-5]
 gi|171097172|gb|EDT42022.1| diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria
           MEX-5]
          Length = 779

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 97/208 (46%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVIISITISLLLGYISGS--ILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +Y    N+ L++ S     +L + S +  ++ +L      ++QL+  D L+GL N  A +
Sbjct: 291 DYDHTRNVYLLMTSFITLAMLAFFSVATGLIGKLLGREREMTQLAEYDLLTGLANRYATL 350

Query: 120 SSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
             L       +   +L ++F D+D FK +ND  GH  GD V+   + +L    G    + 
Sbjct: 351 RGLRNDVSMPASLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSEAVGDEGSLA 410

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EF     G   E+ A  LA  + ++    +     G S  +  S GIA      E
Sbjct: 411 RIGGDEFVVVMKGDDVERRAVRLAEAIIRMF--GEPFDVRGSSFVLHASIGIALHSVANE 468

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +AD A+Y AK +G+N    ++
Sbjct: 469 SEIDLLKKADLAMYSAKDAGKNCYQFYA 496


>gi|126735430|ref|ZP_01751176.1| GGDEF domain protein [Roseobacter sp. CCS2]
 gi|126715985|gb|EBA12850.1| GGDEF domain protein [Roseobacter sp. CCS2]
          Length = 260

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 67/257 (26%), Positives = 111/257 (43%), Gaps = 23/257 (8%)

Query: 2   TRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL 61
           +  +K+FLS W         F+  T     SI  S+ +   +F  N     + L P    
Sbjct: 13  SAQMKEFLSSWRGV------FAAATLTTLASICVSVLMVYFLFQGNDLHAALRLAP---- 62

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
                      +IS+ I+  + +   S ++        + ++   D L+ +     F + 
Sbjct: 63  -----------VISVVIAFPVTFFIWSQVRSNIQLSFELQRIVDRDRLTDVATRDFFFAR 111

Query: 122 LGSYNEKLSI-VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           +        I +  DID+FK +ND FGH  GDKVI+ +++ L         V R GGEEF
Sbjct: 112 MRGDPNAYGISLMVDIDFFKVVNDTFGHIAGDKVISRVAEILYENTRPDDIVCRFGGEEF 171

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                   + +   +A  +R+ I    I    G ++ +T+S G + +   + +   I +A
Sbjct: 172 VIFLHQQDKADGFAIAERMREAIAEEVIEF-DGHNLSVTVSIGGSLKERLKDVEFAIQQA 230

Query: 241 DQALYVAKKSGRNRVVC 257
           DQALY AK +GRNR V 
Sbjct: 231 DQALYQAKANGRNRTVF 247


>gi|313617752|gb|EFR89993.1| ggdef domain-containing protein [Listeria innocua FSL S4-378]
          Length = 183

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 5/171 (2%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHP 149
              + +  Q S +D L+ L N   F       + + + +++++  DIDYFK IND +GH 
Sbjct: 11  KQLFQKYEQDSTLDYLTRLSNVRQFDEKINHVMDAGSRQVTLMLIDIDYFKNINDTYGHD 70

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD ++  L+  L           R GGEEF+   L    ++    A  +RK  E     
Sbjct: 71  AGDAILKQLAIILKRNTSDGSEAFRNGGEEFSIVLLDCPIEKGNFFAEQVRKETEEHDFM 130

Query: 210 ISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFS 259
           I SG  + ITIS G++        S  +   AD+ALY AK +GRNRV    
Sbjct: 131 IPSGKLVKITISVGVSSSKDGANTSEGLFKSADEALYKAKLTGRNRVCIAD 181


>gi|296104056|ref|YP_003614202.1| putative diguanylate cyclase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058515|gb|ADF63253.1| putative diguanylate cyclase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 459

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L ELF    R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 281 TLLHELFDEVAR--HEVGVDVLTRLLNRRFLPTIFKREITQASRSGTPLSVLLIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           QIND +GH  GD+++  ++        T  +V R GG+EF       +E +   +A  +R
Sbjct: 339 QINDTWGHNTGDEILRKVAGAFYDNVRTCDYVFRYGGDEFLIVLTEITEADTLRIAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + +E  +++  +G  I +++S G A          +I  AD+ALY AK+ GRN V  +
Sbjct: 399 RRVEKIKVHSPTGEPIPLSLSIGAAMFNGHPDYERLIQAADEALYGAKRRGRNCVELW 456


>gi|238928087|ref|ZP_04659847.1| GGDEF domain protein [Selenomonas flueggei ATCC 43531]
 gi|238884047|gb|EEQ47685.1| GGDEF domain protein [Selenomonas flueggei ATCC 43531]
          Length = 600

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 21/230 (9%)

Query: 38  FIATVIFIANIFLFYIGLTPF--YGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
            I  + F   ++      TPF  Y + + +++   L++        L   S ++  E+  
Sbjct: 344 IIDALAFQYRLYEAQTSFTPFSIYTICFFVIQ---LILDRAESERRLMERSNTLEGEVQA 400

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
              R+     ID L+G+ N + F            +    LS+V FDID+FK IND +GH
Sbjct: 401 VKKRME----IDPLTGVYNRNRFPSAISDFTRIAQNTGAPLSLVMFDIDHFKSINDTYGH 456

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+V+   +  +         + R GGEEF    L     +A   AN +R+ +  + +
Sbjct: 457 DAGDEVLFGFAQTIRSFLDRRHILIRWGGEEFILLCLHYDGAKAQAFANQIREGVAKAWL 516

Query: 209 NISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +      +T S GI       +  + ++ RAD ALY +K+ GRNR+ C
Sbjct: 517 LTAQ----QVTCSGGIGVWHGPDDDATALVKRADTALYASKEGGRNRISC 562


>gi|238762994|ref|ZP_04623961.1| Diguanylate cyclase [Yersinia kristensenii ATCC 33638]
 gi|238698752|gb|EEP91502.1| Diguanylate cyclase [Yersinia kristensenii ATCC 33638]
          Length = 372

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 68/247 (27%), Positives = 112/247 (45%), Gaps = 12/247 (4%)

Query: 22  FSPHTFM-IYFSIFFSIFIATVIFIA--NIFLFYIGLTPFYGLEYILVENLSLVIISITI 78
           F P  F  ++ +    IF  T+I IA   IF   +     + L  ++V  L        +
Sbjct: 114 FIPLLFSKVWENKSNRIFYITIILIAVYRIFTATLLAPNTHTLTQVVVYQL-----CSAL 168

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFD 135
            L + Y + +  +    +Y  +   + ID L+ L N ++    L    S  +   ++  D
Sbjct: 169 CLAICYHALNFKERHIYAYFAMKSRANIDKLTQLNNRASVEYRLATIHSTRQACGLLILD 228

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D+FK +ND +GH  GD ++  +   L+ V     FVGR GGEEF         Q    +
Sbjct: 229 LDHFKLVNDTYGHDGGDILLTEVGRLLMSVTRDEDFVGRYGGEEFIIITHSHDPQTIKAV 288

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           A  +R+ +EN ++ ++ G  I  T S G +       +   +   D+ALY AK  GRNRV
Sbjct: 289 AERIRQCVENLEVQLADGRKIKATTSIGASLYLPGMSMLKALKMTDEALYQAKGQGRNRV 348

Query: 256 VCFSDIE 262
           V +S + 
Sbjct: 349 V-YSRLM 354


>gi|237729697|ref|ZP_04560178.1| response regulator [Citrobacter sp. 30_2]
 gi|226908303|gb|EEH94221.1| response regulator [Citrobacter sp. 30_2]
          Length = 558

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 66/179 (36%), Positives = 93/179 (51%), Gaps = 11/179 (6%)

Query: 89  ILKELFISYNRISQL-SRI--DCLSGLLNHS---AFISSLGSY----NEKLSIVFFDIDY 138
           +++ + I   R+  L +R+  D LSGL NHS    F+ S  +          +V  D+D 
Sbjct: 379 LIRAVSIRAERMRVLRARMSQDSLSGLYNHSTTTHFLKSAIAESNYSGNPFCMVMVDLDR 438

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND +GH VGD+VI  +S        +   VGR GGEEF      +S  +AA +   
Sbjct: 439 FKSINDTYGHAVGDQVIVGISQLFSHRLRSTDIVGRYGGEEFVIIMPNTSSDKAARVVER 498

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           LR+  E    +++   S H T SAGIA+    + I T+  RADQALY AK++GRN    
Sbjct: 499 LRRDYEQVTFSVND-ASFHSTFSAGIAQWQFGDRIETLRERADQALYAAKQNGRNTFCI 556


>gi|254509054|ref|ZP_05121158.1| ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219548038|gb|EED25059.1| ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 452

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 65/258 (25%), Positives = 109/258 (42%), Gaps = 24/258 (9%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL 69
           + WL     L SF     ++ F          ++ +A   L     T     E+   + +
Sbjct: 169 AAWLIVCSLLVSFIAWLILLRFKSDAESVKEAIVALAKGNLEAKVDTASMDSEF---KGI 225

Query: 70  SLVIISITISLLLGYISGSILKE--------LFISYNRISQLSRIDCLSGLLNHSAFISS 121
           +     +TISL    ++   L+E        L   + ++  LS  D L+GL N  AF  S
Sbjct: 226 AFFFNQMTISLRESTVTKHELEEEVKRQTMQLEKKHEQLIFLSEHDPLTGLYNRRAFDKS 285

Query: 122 LG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L            KL+I+F D+D FK +ND +GH  GD ++  ++++L        FVGR
Sbjct: 286 LENAIVKANRTKCKLAILFIDLDDFKVVNDTYGHDAGDAILVNVANRLSNAIRQSDFVGR 345

Query: 175 LGGEEFAAA--ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE- 231
           LGG+EF      L + +     +   ++ I E    N   G  + I+ S G++       
Sbjct: 346 LGGDEFVICLDLLNNFDILPQKVEQIMQAICEPIGFN---GRELSISASIGVSHFPDSTR 402

Query: 232 PISTIIYRADQALYVAKK 249
               ++  AD+A+Y +K 
Sbjct: 403 NKEVLLSMADEAMYRSKH 420


>gi|163849063|ref|YP_001637107.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222527033|ref|YP_002571504.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Chloroflexus sp.
           Y-400-fl]
 gi|163670352|gb|ABY36718.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222450912|gb|ACM55178.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Chloroflexus sp. Y-400-fl]
          Length = 695

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 84/192 (43%), Gaps = 12/192 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDI 136
           ++   + E  +   R+      D L+GL N       L    ++         +++F D+
Sbjct: 247 VNYRDITERKLMELRLQHGVLHDALTGLPNRVLLSDRLAQAIKRSQRNPQYHFAVLFLDL 306

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK IND+FGHPVGD+ +   + +L     +     RLGG+EF          +A  + 
Sbjct: 307 DHFKVINDSFGHPVGDRFLVTAASRLHSCLRSIDTCARLGGDEFVILLDDIHSLDA--VV 364

Query: 197 NDLRKIIENSQINIS-SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254
              R+II+   + +   G  +H ++S GI          + ++  AD A+Y AK SG++R
Sbjct: 365 QVARRIIQQLSLPVEIDGQMLHSSVSIGIVFGSAEYNDPAEVLRDADIAMYRAKASGKSR 424

Query: 255 VVCFSDIENNTC 266
              F        
Sbjct: 425 YEVFHPAMREAA 436


>gi|330502616|ref|YP_004379485.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas
           mendocina NK-01]
 gi|328916902|gb|AEB57733.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas mendocina
           NK-01]
          Length = 554

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 10/177 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYF 139
           + + E       +   +  D L+ L N   F+  L +   +L        +I+ FD+DYF
Sbjct: 376 TDVTERKQIEAELQAFATTDFLTQLANRRHFMHRLEAELARLQRNPEQSAAILMFDLDYF 435

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND +GH VGD+ +   +  L          GRLGGEEFA     +S  +A   A  +
Sbjct: 436 KAINDRWGHNVGDQALRHFAAILSSQLRRTDTAGRLGGEEFAVVLSEASLDKAMHFATRI 495

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
           +  +  + I   +G  I++ +S GI+     +  +   + R+D ALY AK+ GRNR+
Sbjct: 496 QNELAGTPIQH-AGEQIYLAVSVGISLLNAGDASVEAALSRSDIALYCAKRGGRNRI 551


>gi|300713215|ref|YP_003739254.1| diguanylate cyclase [Erwinia billingiae Eb661]
 gi|299060286|emb|CAX53536.1| diguanylate cyclase [Erwinia billingiae Eb661]
          Length = 528

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 107/242 (44%), Gaps = 23/242 (9%)

Query: 29  IYFSIFFSIFIAT--VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS 86
           ++F +   I + +  V+F A I       +P   L   +    S   +     +   Y  
Sbjct: 283 VWFILLIVILVGSMVVLFAARIS------SPLEKLAQSIHTTDSGATLRALPQINAWYTE 336

Query: 87  GSILKE-----LFISYNRISQLS---RIDCLSGLLNHSAFISSLGSYNE--KLSIVFFDI 136
              L+E     L +  N++S L+   R D L+GLLN   F + +  +        +  DI
Sbjct: 337 AVRLREAVYHHLQMMINQVSSLTDETRTDPLTGLLNRRGFATLIRQHARTPNHCAIAVDI 396

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND  GH  GD V+  L+  L     +   V R GGEEF      +   +AA  A
Sbjct: 397 DHFKKINDRLGHDAGDAVLISLAGLLRTACRSSDIVSRSGGEEFVIFMPDTQLSDAAATA 456

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
             +R ++E S    +      IT+SAG+A     +     +  +AD ALY AK +GRN V
Sbjct: 457 ERVRHLVETSLFPYAG----QITVSAGVAALIDVQGSTEGLFRQADMALYEAKGAGRNIV 512

Query: 256 VC 257
           + 
Sbjct: 513 II 514


>gi|289666116|ref|ZP_06487697.1| Putative signal protein with GGDEF domain [Xanthomonas campestris
           pv. vasculorum NCPPB702]
          Length = 973

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 21/227 (9%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE---LFI 95
           IA  + I +  L  IGL  +     +  E +        ++ L+   +  + +E   L  
Sbjct: 748 IALYVLIGSGLL--IGLWRWRHRHLVARERM--------LAELVAERTYQLEREKRELES 797

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
           +   ++  +  D L+GLLN S  + ++             L++V  D+D+FKQ+ND  GH
Sbjct: 798 ARAALALKASHDALTGLLNRSGILEAMAEELQGCAHGQHPLAVVLIDLDHFKQVNDGHGH 857

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD V+A +  +L         VGR GGEE      G ++Q    L   + + +  +  
Sbjct: 858 LVGDAVLAKVGARLTACLRDSDKVGRYGGEELLLLLPGMTQQSQHRL-RAIHEALSLAPY 916

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            + +   + +T S G++     +  ++++ RAD+ALY AK+SGRNR+
Sbjct: 917 EVGTARPLQVTCSVGVSWFRVGDTAASLLARADEALYRAKRSGRNRI 963


>gi|326316268|ref|YP_004233940.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373104|gb|ADX45373.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 516

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 8/175 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           + +L    +R S  +R D L+G LN      +L          +  L +   D+D FK I
Sbjct: 342 IAKLQEELDRASAQARHDPLTGSLNRKGLDEALDREVARALRNDAPLCVALLDLDNFKAI 401

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD+ +  L+     V      + R GGEEF      +S  +       L++ 
Sbjct: 402 NDRLGHTGGDEALKHLAGVTREVMRPQDQLARYGGEEFVIILPDTSLAQGVEAMARLQRE 461

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  ++  +     + IT SAG+A+   +E     I RADQ +Y+AK+SG+NRV+ 
Sbjct: 462 L-TTRYFLKDQEKVLITFSAGVAQLAPQETTVEAIRRADQGMYLAKRSGKNRVMA 515


>gi|83311347|ref|YP_421611.1| PAS/PAC domain-containing protein [Magnetospirillum magneticum
           AMB-1]
 gi|82946188|dbj|BAE51052.1| FOG: PAS/PAC domain [Magnetospirillum magneticum AMB-1]
          Length = 642

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 87/207 (42%), Gaps = 12/207 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
              E LS+  +      +  +++  S +        RI + +  D L+GL N S F+  L
Sbjct: 433 FYAEWLSINALRDVSGAITHFVAVFSDITHRKEDEERIWRQANYDALTGLPNRSLFVDRL 492

Query: 123 GSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                      ++ +++F D+D FK +ND  GH  GD ++   + +L         + RL
Sbjct: 493 NQAVRQSKRDKKRFALMFLDLDGFKAVNDTLGHAAGDVLLQQTAARLHQCMRATDTLARL 552

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPI 233
            G+EF     G       A++A  +   +     ++  G + H+  S GIA         
Sbjct: 553 AGDEFVVILEGVHDRDNPALVAGKILATLSK-PYDLEVG-TAHVRGSIGIALYPEDAADG 610

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSD 260
             +I RAD A+Y  K+ G+N  +   D
Sbjct: 611 PALIRRADTAMYAVKRRGKNSFLFAGD 637


>gi|47096495|ref|ZP_00234087.1| GGDEF domain protein [Listeria monocytogenes str. 1/2a F6854]
 gi|47015148|gb|EAL06089.1| GGDEF domain protein [Listeria monocytogenes str. 1/2a F6854]
          Length = 352

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 109/238 (45%), Gaps = 12/238 (5%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           FS F+A +I      L+Y       G      E +   ++    +LL+ Y    I K   
Sbjct: 117 FSRFVALIILNFPAILYYFVNNFDEGRILRGFEIIEYFLLFFVTALLVFYACNYIDKSNL 176

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
           +  N +++ +  D L+ L N   F               + LS+   DID+FK+IND  G
Sbjct: 177 VIQN-LTETAMTDSLTNLPNMRFFTQQFGWIFTKSQKRKKSLSLFIIDIDHFKEINDFHG 235

Query: 148 HPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  G+ V+A  S  L    F       R+GGEEFA        ++AA++A+  R+ +E +
Sbjct: 236 HQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTEQAALIADFFREEVERA 295

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS-DIE 262
           +    +  S  +T+S G+A          ++   ADQALY AK++GRN++     +IE
Sbjct: 296 KFPY-NPASGKVTVSIGVASASSNFSTTESLFEAADQALYQAKQNGRNQIAVHQGEIE 352


>gi|315644687|ref|ZP_07897818.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Paenibacillus vortex V453]
 gi|315279946|gb|EFU43245.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Paenibacillus vortex V453]
          Length = 673

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 68/254 (26%), Positives = 119/254 (46%), Gaps = 19/254 (7%)

Query: 18  NLESFSPHTFMIYFSIFFSIFIATVI----FIANIFLFYIGLTPFYGLEYILVENLSLVI 73
              + S  +F+ + S     F    +     +A  F  + G+   +  + + +  L  V 
Sbjct: 161 RFRNHSKSSFLKWGSAVIMGFAVCGMHYTGMMAARFEPHSGMITQHEPQSVDLFLLYCVT 220

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNEKL 129
           I+I   LL+ +  G++  +  +    + +L+  D ++GL N       F S   S  EK+
Sbjct: 221 ITIFAILLISW--GAMFFDRHV----LEKLAYQDTITGLPNRNEMNRFFES--NSETEKI 272

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++F D+D FK IND  GH VGD ++  + ++L         V R+GG+EF      S  
Sbjct: 273 SVLFLDLDQFKAINDTLGHHVGDMLVQEVGNRLRQFIQGYQQVFRIGGDEFLIILKQSDP 332

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAK 248
             A  LA D+ + I+N  +    G  +++T S GI+    H    ST++  AD A+Y AK
Sbjct: 333 MYAQRLAEDILQKIKN--VYFIDGNELYVTGSIGISIGSVHSSDRSTLLKNADTAMYKAK 390

Query: 249 KSGRNRVVCFSDIE 262
             G+N+   +++  
Sbjct: 391 GLGKNQQCLYTEEM 404


>gi|222149336|ref|YP_002550293.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221736320|gb|ACM37283.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 800

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 88/187 (47%), Gaps = 11/187 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           + +  L  S  R  + +  D L+GLLN   F + L             L+ +F D+D FK
Sbjct: 335 TDITALKQSEARNRRQAMTDHLTGLLNRQGFENELDVQIEATDRQGGSLACLFVDLDRFK 394

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDL 199
            INDN GH  GD  +  L D +V +        R+GG+EFA     +  + AA  +AND+
Sbjct: 395 WINDNLGHHAGDTTLKILVDMIVHLLPENSVAARIGGDEFAILLRANDCETAARAVANDI 454

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             I E     I  G +  ++ S GIA    H E  + ++ +AD A+Y  K+ G+N    F
Sbjct: 455 CGIFET--PFIVKGTATRLSASIGIALYPQHAETATELLQKADMAMYNRKRDGKNGFQIF 512

Query: 259 SDIENNT 265
            D   NT
Sbjct: 513 DDSIGNT 519


>gi|170747430|ref|YP_001753690.1| diguanylate cyclase [Methylobacterium radiotolerans JCM 2831]
 gi|170653952|gb|ACB23007.1| diguanylate cyclase [Methylobacterium radiotolerans JCM 2831]
          Length = 352

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 9/179 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDY 138
           + S ++ L    +   + S  D L+GL N   F  +L +  E        +S++  DID+
Sbjct: 162 TRSEIETLREKLDATRRESLTDALTGLANRKHFEETLKASMETARARTTPMSLIILDIDF 221

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+ ND +GH  GD+V+  ++  +    G    + R GGEEF     G     A  +A  
Sbjct: 222 FKRFNDLYGHLTGDQVLRLVAIVMRENAGKQAQLARFGGEEFGIILPGVDRAVAKQVAET 281

Query: 199 LRKIIENSQ-INISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +R  +   + +  S+G S+  ITIS G+A     +  ++++ RAD  ++ AK++GRNR 
Sbjct: 282 VRTSVMGRELVKRSTGESLGKITISLGVAVLRPGDTPASLMERADLCMFAAKRAGRNRF 340


>gi|90418289|ref|ZP_01226201.1| putative sensory box/GGDEF family protein [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337961|gb|EAS51612.1| putative sensory box/GGDEF family protein [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 792

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 80/186 (43%), Gaps = 13/186 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
            S +     +  RI+ L+  D L+GL N S F   +              S+++ D+D F
Sbjct: 336 ASDITATTHAERRIAYLAHHDSLTGLANRSWFAEEIDRICASPPPQGPTSSLLYLDLDNF 395

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND  GH  GD+++  ++ +L+ +      V R+GG+EFA  A  +     A  LA  
Sbjct: 396 KLINDRNGHLTGDQLLRQVAARLLRIVEPGDMVARIGGDEFAIVAHSAPDTASADSLATA 455

Query: 199 LRKIIENSQINISSGPSI-HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
           +           S G  + ++  S GIA           ++  AD ALY AK +G+N   
Sbjct: 456 ILACFAT---PFSLGAELANVGCSVGIAFPGLDGANPDDLLRNADLALYEAKAAGKNTFC 512

Query: 257 CFSDIE 262
            F    
Sbjct: 513 FFESEM 518


>gi|22127604|ref|NP_671027.1| hypothetical protein y3730 [Yersinia pestis KIM 10]
 gi|45443466|ref|NP_995005.1| hypothetical protein YP_3734 [Yersinia pestis biovar Microtus str.
           91001]
 gi|51594943|ref|YP_069134.1| hypothetical protein YPTB0592 [Yersinia pseudotuberculosis IP
           32953]
 gi|108810485|ref|YP_646252.1| hypothetical protein YPN_0320 [Yersinia pestis Nepal516]
 gi|153949954|ref|YP_001402442.1| GGDEF domain-containing protein [Yersinia pseudotuberculosis IP
           31758]
 gi|167426001|ref|ZP_02317754.1| ggdef domain protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|218927646|ref|YP_002345521.1| hypothetical protein YPO0449 [Yersinia pestis CO92]
 gi|229900673|ref|ZP_04515797.1| putative exported protein [Yersinia pestis Nepal516]
 gi|270487962|ref|ZP_06205036.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis KIM
           D27]
 gi|21960713|gb|AAM87278.1|AE013976_6 hypothetical [Yersinia pestis KIM 10]
 gi|45438335|gb|AAS63882.1| putative exported protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51588225|emb|CAH19832.1| putative exported protein [Yersinia pseudotuberculosis IP 32953]
 gi|108774133|gb|ABG16652.1| hypothetical protein YPN_0320 [Yersinia pestis Nepal516]
 gi|115346257|emb|CAL19128.1| putative exported protein [Yersinia pestis CO92]
 gi|152961449|gb|ABS48910.1| putative diguanylate cyclase, GGDEF domain [Yersinia
           pseudotuberculosis IP 31758]
 gi|167054924|gb|EDR64724.1| ggdef domain protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229682012|gb|EEO78104.1| putative exported protein [Yersinia pestis Nepal516]
 gi|270336466|gb|EFA47243.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis KIM
           D27]
 gi|320016988|gb|ADW00560.1| putative exported protein [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 425

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 13/186 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQIND 144
           K L    + ++  +  D L+GL N + F   L          E  +++F D D+FK +ND
Sbjct: 238 KHLTQENDSLAYRAAHDSLTGLANRTFFEGRLSRTLNDCQPGEHTAVLFLDGDHFKDVND 297

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKII 203
           N+GH  GD V+  ++ ++  +      V RLGG+EFA       +  +   +A+ +   +
Sbjct: 298 NYGHAAGDLVLTTIAVRIRALLRETDLVARLGGDEFAVLLTPIHNLDDVLTIADHIIDSM 357

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAK---KSGRNRVVCFS 259
               I ++ G  I +++S GIA    H +    ++ RAD+A+Y AK   +SG+ R+  + 
Sbjct: 358 A-LPIILAEGCEITVSLSIGIAVYPDHAQTPEKLLQRADEAMYQAKKNFRSGK-RIFAYQ 415

Query: 260 DIENNT 265
               NT
Sbjct: 416 PNTTNT 421


>gi|307720847|ref|YP_003891987.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978940|gb|ADN08975.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
          Length = 630

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 59/198 (29%), Positives = 97/198 (48%), Gaps = 11/198 (5%)

Query: 66  VENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           +E++ L I   + I L+L Y+       L   Y +  + + ID L+ + N       L +
Sbjct: 193 MEDVFLYISFFMFIMLILAYV-------LVYLYYKTRKKAFIDPLTQVYNRQYLSEFLET 245

Query: 125 YN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            + +   ++  D+D FK++NDN+GH +GD V+  ++ ++         V R GGEEF   
Sbjct: 246 TSLQNYYLMMIDLDNFKRVNDNYGHNIGDDVLVAVAQEIKSTVRQEDIVIRFGGEEFILL 305

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQ 242
                 +E+  +A  +R+ + N  I  S    I +T+S G+    +    +   I  AD+
Sbjct: 306 VDKKENKESIGVAERIRQAVMNLDIQ-SHDNQISMTLSIGVNPFPYSAKNMDEAIKIADE 364

Query: 243 ALYVAKKSGRNRVVCFSD 260
            LYVAK SGRNRV  F D
Sbjct: 365 QLYVAKSSGRNRVEIFDD 382


>gi|297569508|ref|YP_003690852.1| response regulator receiver modulated diguanylate cyclase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925423|gb|ADH86233.1| response regulator receiver modulated diguanylate cyclase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 316

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 23/192 (11%)

Query: 82  LGYISGSILKELFISY--NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132
           +  +   + + L       ++ QLS  D L+GL N   F   L          N  L ++
Sbjct: 120 IDELEAKLHRALREQNMVRKLEQLSMRDALTGLFNRRGFEVKLEEEVPRAHRQNYPLYVI 179

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQE 191
             D+D FK  ND FGH  GD+ +  +   L+        +  R GG+EFA     + + +
Sbjct: 180 IIDMDKFKTYNDEFGHQAGDRALQAIGRLLLRNTRDNVDWCCRPGGDEFAIIIPYTDDHQ 239

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE------RCHKEPISTIIYRADQALY 245
           A  +A  + +         +       T+S G+A           E I  ++ RADQA+Y
Sbjct: 240 AMAVAQRILEQYRQHPFGET-------TLSIGLASFHRHPQYTMGEDIEHLLVRADQAMY 292

Query: 246 VAKKSGRNRVVC 257
            +K++G +R+ C
Sbjct: 293 RSKQAGGDRISC 304


>gi|257459114|ref|ZP_05624233.1| putative diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
            sensor [Campylobacter gracilis RM3268]
 gi|257443499|gb|EEV18623.1| putative diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
            sensor [Campylobacter gracilis RM3268]
          Length = 1355

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 59/200 (29%), Positives = 98/200 (49%), Gaps = 13/200 (6%)

Query: 74   ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNE 127
             S+T + +L +   + + ++    + +++++  D L+GL N   F+ +          N 
Sbjct: 809  FSLTSNFILMF---TEISQIKQKESELAKIAHHDALTGLPNRVYFMKAAQRFTANSGENS 865

Query: 128  KL-SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
            KL +++F D D FK IND +GH VGD  +  +S  +  +      + RLGG+EF A    
Sbjct: 866  KLMAVLFIDFDGFKAINDTYGHEVGDMFLQAISKAMSGLLRKGDILARLGGDEFGAIIGD 925

Query: 187  SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQAL 244
               ++AA +  D    I   + N+  G  I  +IS G A     E I    ++ RAD+A+
Sbjct: 926  LQSKDAAHVLLDRLLGISKMKFNLK-GNEISASISVGAAFYDGSEKIDFPGLLSRADRAM 984

Query: 245  YVAKKSGRNRVVCFSDIENN 264
            Y AK SG+NR   F   E +
Sbjct: 985  YRAKTSGKNRYCIFERAEAD 1004


>gi|256829294|ref|YP_003158022.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578470|gb|ACU89606.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfomicrobium baculatum DSM 4028]
          Length = 1075

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQ 141
            + EL    + +   ++ D L+G+ N           ++ L     KL+++FFD+D FK 
Sbjct: 629 DITELKRQQDALEYQAQHDALTGMPNRILLGDRLRMALAQLARSGGKLALLFFDLDNFKT 688

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           IND  GH VGD+++  LS +L  +  +   + RLGG+EF        S   A+ +A  + 
Sbjct: 689 INDGLGHGVGDELLVDLSRRLERLLRSGDTLARLGGDEFLILLPEIESVDAASHIATRML 748

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++             +T S G+            +I  AD A+Y AK  GRN    F+
Sbjct: 749 DALKA--PFHHGDVEYFVTASIGLTIAPDDGNEAPKLIKNADMAMYRAKSMGRNNYQYFT 806

Query: 260 DIENNTC 266
              +   
Sbjct: 807 PEMDVAA 813


>gi|237805276|ref|ZP_04591980.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331026384|gb|EGI06439.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 226

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 97/209 (46%), Gaps = 12/209 (5%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHS 116
           Y    + +  + +  +++   LL   I   I  E  L  + + +  +++ D L+ L N  
Sbjct: 3   YAYRSMALSGMIIFTLALLGVLLYRQIQQLISAEGELNNTRHELEIIAQTDSLTNLANRR 62

Query: 117 AFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGT 168
            F +SL     +       L+I+  DID+FKQ ND +GH  GD  +  +++ L      +
Sbjct: 63  CFDASLQKEWGRASRNNSVLAIILLDIDWFKQYNDRYGHLKGDDCLMQVAEILGSCINRS 122

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--E 226
                R GGEEF      +    A  +A  +R  IEN+ I  S+ P  ++TIS+G+    
Sbjct: 123 GDLAARYGGEEFVILLAETDLAGALSVAEKVRSAIENAFIEHSASPVGNLTISSGVVAIS 182

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRV 255
              KE     +  AD+ LY AK  GRNRV
Sbjct: 183 APEKEDHKAALEEADRLLYSAKTKGRNRV 211


>gi|149186974|ref|ZP_01865282.1| diguanylate cyclase with PAS/PAC sensor [Erythrobacter sp. SD-21]
 gi|148829363|gb|EDL47806.1| diguanylate cyclase with PAS/PAC sensor [Erythrobacter sp. SD-21]
          Length = 594

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 11/162 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+G+ N    +++L          +E L++   DID+FK IND FGH VGD
Sbjct: 431 VRMLAETDALTGMPNRRYILANLAEAMDANEFRHEPLTVAMVDIDHFKAINDEFGHEVGD 490

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L+    +   VGR+GGEEF          E  +  + +R+ +   +     
Sbjct: 491 TVLKQIAAILMDELRSDDSVGRMGGEEFLFVFPKRRAAELDLRCDRMRERLAAEEWE--- 547

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
              + +T+S GIAE         ++  AD+ALY AK++GRNR
Sbjct: 548 -HPMTVTLSIGIAELQPGWDERDLLRAADEALYEAKRAGRNR 588


>gi|51243987|ref|YP_063871.1| hypothetical protein DP0135 [Desulfotalea psychrophila LSv54]
 gi|50875024|emb|CAG34864.1| hypothetical protein DP0135 [Desulfotalea psychrophila LSv54]
          Length = 784

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 74/166 (44%), Gaps = 9/166 (5%)

Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            S  D L+   N       L           +++  +  DID+FK +ND  GH  GD V+
Sbjct: 610 QSLKDPLTRCHNRRFMDEYLKHLEVLHKREPQQVGFIMADIDHFKMVNDEEGHQAGDSVL 669

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGP 214
             L+  L +V        R GGEEF       SE  A  I+   +R  +E + + +  G 
Sbjct: 670 RQLAKILKMVIREQDLTIRYGGEEFLIILHNISEASAPEIVGEKIRAAVEKTPLTLPGGK 729

Query: 215 SIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
            I  TIS G A        +  +I  AD ALY AK+ GRNRV+ F+
Sbjct: 730 QIQKTISIGTANFPKDASKLYQVIKFADVALYKAKEQGRNRVLGFN 775


>gi|326627689|gb|EGE34032.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 663

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSDSLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 394 VFSPEMNQ 401


>gi|322804630|emb|CBZ02182.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Clostridium botulinum H04402 065]
          Length = 447

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 8/185 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQI 142
           + + E      +I  L+  D L+GL N    I ++        NEK +++F D+D+FK I
Sbjct: 11  TDITENKKDKEKILGLAYYDSLTGLSNRKKIIETINKTINNYENEKFAVLFIDLDHFKSI 70

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH VGD V+  +S +  ++      +GRLGG+EF      +S  +A  LA  +   
Sbjct: 71  NDTLGHDVGDYVLEKVSARFKMLLSPKHKIGRLGGDEFIIVQNITSISDAEKLACKICTT 130

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           + N  I       + I  S GI+      +  ST++  AD A+Y AKK+G  +   +S  
Sbjct: 131 L-NHSIKYKED-DLFIGASIGISIYPEDGKDTSTLMKNADAAMYAAKKNGGYKYEVYSRS 188

Query: 262 ENNTC 266
            N   
Sbjct: 189 MNERA 193


>gi|212213496|ref|YP_002304432.1| sensory box/GGDEF family protein [Coxiella burnetii CbuG_Q212]
 gi|212011906|gb|ACJ19287.1| sensory box/GGDEF family protein [Coxiella burnetii CbuG_Q212]
          Length = 577

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/198 (30%), Positives = 94/198 (47%), Gaps = 13/198 (6%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------N 126
           +   I+L    +  SI   L  +  RI+ L+  D L+ L N   FI  L          +
Sbjct: 117 LHFIIALQDVTLQQSIFHTLLKNEARIAYLASRDQLTSLPNRREFIHRLNEEIGKPKSVD 176

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAA 184
            KLS++F D+D FK IND  GH +GD V+  +SD+L  +  +P   F+G LGG+EF    
Sbjct: 177 SKLSLLFLDLDNFKDINDALGHHMGDCVLVHVSDRLRKLDLSPLNYFLGHLGGDEFVILL 236

Query: 185 LGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQ 242
               +  +A + A  +      S         +++  S GI  +   K    T++ +AD 
Sbjct: 237 KDLQQDKDATLCAKKISNAFFES--FKIKNFLLYVNFSIGITIDFYSKTDSETLLKKADM 294

Query: 243 ALYVAKKSGRNRVVCFSD 260
           A+Y AKK GRN    +++
Sbjct: 295 AMYQAKKKGRNTFSFYTE 312


>gi|254457534|ref|ZP_05070962.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207086326|gb|EDZ63610.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 245

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 109/238 (45%), Gaps = 11/238 (4%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           ++Y +IF       V+ I  I + +        +  ++ + +   I S    + + Y+S 
Sbjct: 10  LVYKAIFIVASALIVLSIVRILVLHHDAQDIALIYDLIFKEMFFSISSAVFIIFILYLS- 68

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQ 141
            I KEL+   N+    +  D L+GL N           +SL   +   ++VF DID FK 
Sbjct: 69  -IKKELYQVNNKAVTYAFKDALTGLNNRHYLNNFLENFTSLRKEDTDFAVVFIDIDRFKL 127

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD ++  L+  L  +      + R GGEEF        +Q+       +R+
Sbjct: 128 INDSLGHSTGDCILKSLALSLQSLIRPGDTLCRYGGEEFVIIFTEIYKQDVLRKVEQIRE 187

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            IE             ITISAGI+     + I+ ++  +D+ALY+AK +GRN V  F+
Sbjct: 188 SIERRTFECKEQK---ITISAGISFGLRDDDINEVMEHSDKALYMAKDAGRNCVKVFN 242


>gi|114776533|ref|ZP_01451578.1| diguanylate cyclase (GGDEF domain) [Mariprofundus ferrooxydans
           PV-1]
 gi|114553363|gb|EAU55761.1| diguanylate cyclase (GGDEF domain) [Mariprofundus ferrooxydans
           PV-1]
          Length = 767

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 82/162 (50%), Gaps = 11/162 (6%)

Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S  D LSGL N     S L         Y   +S++  DID+FK++ND FGH VGD V+ 
Sbjct: 608 SNTDKLSGLYNRVKMDSVLTAQKASVDRYQNNVSLIMIDIDFFKEVNDTFGHAVGDTVLI 667

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            LSD +        ++GR GGEEF      +   +A ILA  L + +     +       
Sbjct: 668 TLSDIMKNNVRATDYLGRWGGEEFLIVCPNTGLTDAGILAEKLVRKVSQQAFD----QVG 723

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +TISAG+A    +  I   + + D+ALY +K+SGRNRV  F
Sbjct: 724 TVTISAGVASFSKESTIEDSLLQVDKALYQSKQSGRNRVTIF 765


>gi|77543222|gb|ABA87032.1| putative response regulator [Vibrio cholerae]
 gi|259156480|gb|ACV96424.1| response regulator receiver protein [Vibrio cholerae Mex1]
          Length = 309

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 8/173 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNE---KLSIVFFDIDYFKQINDN 145
           L    + +  L+ +D L+G+ N   F +     L  +      L+++  DIDYFK+ ND 
Sbjct: 134 LKRQADLLRSLAYLDGLTGIYNRRYFDNVLSIQLAQHRRKLSPLAVLMIDIDYFKKYNDT 193

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GD  +  ++  L  +      V R GGEEF      +    A  +A  +   +  
Sbjct: 194 FGHLAGDDALRKVASALKHIGRQADMVARYGGEEFVVLLADTDINGAVTVAKKMLHHVLE 253

Query: 206 SQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVC 257
             I     P+  ++IS GIA     +   + II  ADQ LY++K+ GRN    
Sbjct: 254 LDIAHPQTPATKLSISVGIAVADEAKGYDSNIIELADQQLYLSKQRGRNTYSV 306


>gi|150388986|ref|YP_001319035.1| diguanylate cyclase [Alkaliphilus metalliredigens QYMF]
 gi|149948848|gb|ABR47376.1| diguanylate cyclase [Alkaliphilus metalliredigens QYMF]
          Length = 512

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 15/170 (8%)

Query: 94  FISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNF 146
           +I+  RI   ++ D L+GL N         AF + +       +I+  DID FK++ND +
Sbjct: 344 YIANLRIR--AKYDGLTGLFNRHTFDTIYEAFYNGIKHEKMDFAILMVDIDNFKEVNDQY 401

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GHPVGD+V+  ++  +         + R GGEE      GS+  EA  +A  +RK IE+ 
Sbjct: 402 GHPVGDEVLRKMARAMQQSLRDHDVIARYGGEEMIIILKGSNPPEAKGIAERIRKSIESL 461

Query: 207 QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
           +I       I IT+S G+A   +       +I  AD+ LY AK+ G+N+ 
Sbjct: 462 EI-----QGIRITVSIGMANFRYDSYEKDELITIADKCLYEAKRKGKNQF 506


>gi|163793733|ref|ZP_02187707.1| response regulator receiver modulated diguanylate cyclase [alpha
           proteobacterium BAL199]
 gi|159180844|gb|EDP65361.1| response regulator receiver modulated diguanylate cyclase [alpha
           proteobacterium BAL199]
          Length = 302

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 11/176 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           EL    + ++ L+ +D L+G+ N   F             +   +S++  D+D FK  ND
Sbjct: 125 ELKRHRDHLTSLAYLDGLTGIANRRRFDEYAAVEWQRARRHARLMSVIMIDVDQFKHYND 184

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD  +  ++  L   V      + R GGEEF      +  + A  +A  +R  +
Sbjct: 185 RYGHQEGDACLRQIAGALRKTVHRPADLLARYGGEEFVCLLPETPAEGAREIAERMRAAV 244

Query: 204 ENSQINISSGPSI-HITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVV 256
               I  +   +  H+TIS G +         + T +  AD  LY AK +GRN++ 
Sbjct: 245 AQLGIPHAGATAADHVTISLGASCTIVGMDTALETSLSAADANLYKAKANGRNQIA 300


>gi|186472629|ref|YP_001859971.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Burkholderia phymatum STM815]
 gi|184194961|gb|ACC72925.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Burkholderia phymatum STM815]
          Length = 915

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 16/189 (8%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + E  ++  +I +L+  D L+ L N +     L          +   +++F D+D FK 
Sbjct: 460 DITERKLAEEQIKELAFFDALTHLPNRTLLRDRLKQVIALSAQNHTHGALLFVDLDNFKT 519

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS--EQEAAI----L 195
           +ND  GH  GD ++  ++ +L+        V R+GG+EF       S    EAA      
Sbjct: 520 LNDTLGHDKGDLLLGQVAVRLLGSVREGDTVARMGGDEFVIVLSDLSRNRDEAASETEGA 579

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A  +   +  S+    +G     T S G      H+  I  ++ ++D A+Y +K+SGRN 
Sbjct: 580 AEKVLTAL--SRPYYLAGTEFRTTASIGATLFTGHETSIDELLKQSDLAMYKSKESGRNA 637

Query: 255 VVCFSDIEN 263
           +  F     
Sbjct: 638 ICFFDPAMQ 646


>gi|34556481|ref|NP_906296.1| hypothetical protein WS0023 [Wolinella succinogenes DSM 1740]
 gi|34482195|emb|CAE09196.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 609

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/233 (27%), Positives = 100/233 (42%), Gaps = 16/233 (6%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           +I     I+   L+ +        EY   +NL  VI +  +      +   +L E+    
Sbjct: 378 YINASFAISPSVLWQLSFAFDQYKEYERAKNLVSVIYNY-LDAAKAILHTRMLMEM---- 432

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150
             + + S  D L+GL N       + S   +        +I+  D+D+FK +ND +GH V
Sbjct: 433 --LKESSLRDPLTGLYNRKFLEEYIESATHQALRSKTTYAILMIDVDFFKMVNDTYGHDV 490

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+VI+ LS+ +           R GGEEF      S+ + A  +A  +R         +
Sbjct: 491 GDQVISGLSNIIQNTIREADLAVRFGGEEFIVLLYNSAPEGAERVAQKIRTRFSEMVFEV 550

Query: 211 SSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
            +      T+S GI+      P +   I  AD ALY AK+SGRN+VV F    
Sbjct: 551 -NHERFSKTLSVGISMFPEDGPTVWRAIKFADIALYKAKESGRNQVVRFHSSM 602


>gi|197265009|ref|ZP_03165083.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|205358003|ref|ZP_03223901.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|197243264|gb|EDY25884.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|205328272|gb|EDZ15036.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|321224330|gb|EFX49393.1| hypothetical protein SEE_02786 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323129972|gb|ADX17402.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 663

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSESLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 394 VFSPEMNQ 401


>gi|218440033|ref|YP_002378362.1| diguanylate cyclase [Cyanothece sp. PCC 7424]
 gi|218172761|gb|ACK71494.1| diguanylate cyclase [Cyanothece sp. PCC 7424]
          Length = 389

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 65/197 (32%), Positives = 95/197 (48%), Gaps = 11/197 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121
           +S  +    IS LL     S++ +    Y  +  L+  D L+G LN  A        I+ 
Sbjct: 189 ISFYLCYFIISFLLTVGFVSMVSQRL--YQDLQTLATCDFLTGTLNRRAMQIEINKEIAY 246

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                ++ +++  DID FK INDN+GH  GD V+   +  +         +GR GGEEF 
Sbjct: 247 CNRTQKRFAVILMDIDRFKLINDNYGHDSGDLVLKHFTMTIKNNIRQEDSLGRWGGEEFL 306

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRA 240
             +  ++ ++A  LA  LR  IEN ++ I +   I  TIS G+A    H      ++  A
Sbjct: 307 VLSKVNTIEDACTLAERLRNGIENEKV-IINHTIIEYTISLGVAVYAIHGTTQEQLVKSA 365

Query: 241 DQALYVAKKSGRNRVVC 257
           D ALY AK SGRNRV  
Sbjct: 366 DTALYQAKNSGRNRVAI 382


>gi|87200494|ref|YP_497751.1| diguanylate cyclase [Novosphingobium aromaticivorans DSM 12444]
 gi|87136175|gb|ABD26917.1| diguanylate cyclase [Novosphingobium aromaticivorans DSM 12444]
          Length = 374

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 84/176 (47%), Gaps = 9/176 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIN 143
           + L  S +   + +  D L+GL N  AF               E L + F DID+FK+IN
Sbjct: 187 RALQKSLDEARRNAEEDHLTGLPNRRAFEALFEREYQEARKAGEPLCVAFCDIDHFKRIN 246

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+V+  +++ L  +      V R GGEEFA      +  +A    +  R+ I
Sbjct: 247 DAHGHAAGDRVLKLVAETLNRISDARCHVARHGGEEFAVLFRSLTPDDAWERLDRARQEI 306

Query: 204 ENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            + ++    +  P   +T S GIA+    +  +  +  AD ALY AK+SGRN++  
Sbjct: 307 ADRRLVNRATDLPFGRVTFSGGIADVFAYDSRTNALRAADDALYAAKQSGRNQIHL 362


>gi|22299542|ref|NP_682789.1| hypothetical protein tlr1999 [Thermosynechococcus elongatus BP-1]
 gi|22295725|dbj|BAC09551.1| tlr1999 [Thermosynechococcus elongatus BP-1]
          Length = 790

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 100/246 (40%), Gaps = 12/246 (4%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS 86
           + +  ++   I +   ++   I         +   E  L++ +S  +    +   L   +
Sbjct: 282 YQVKANLVVPIVVEGRLWGLLICHQCAHPRNWQDSEIELIKQISTQLAIAILQAELYQKA 341

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISS--------LGSYNEKLSIVFFDIDY 138
              ++E      ++   +R D L+ L N   F               +   +++  D+D 
Sbjct: 342 QREIQERKEVEAQLLYQARHDHLTHLPNRWLFEDQVRLSLNHAAAHSDFHYAVLCLDLDR 401

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAN 197
           FK +ND+ GH +GD ++   + +L         V RLG +EFA         ++A  +A 
Sbjct: 402 FKTLNDSLGHAIGDLLLQAFAKRLTRCVSPQDVVARLGSDEFAVLLNDIQGIEQAQAIAQ 461

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            LR+ + N    I    +++ T+S G+     H +    ++  AD A+Y AK  G NR+ 
Sbjct: 462 RLRERL-NHPFEI-DHYTLYTTVSIGLVMGDAHYKSTEELLRDADMAMYYAKSKGHNRID 519

Query: 257 CFSDIE 262
            F  + 
Sbjct: 520 IFDPMM 525


>gi|95930083|ref|ZP_01312822.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95133777|gb|EAT15437.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 371

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 86/173 (49%), Gaps = 9/173 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           +EL  +  ++ +L+  D L+GL N    + +L +  ++       L+ +  D D FK+IN
Sbjct: 195 QELVEANQQLGELAMTDFLTGLYNRRHALLTLEALWDEAQPEGLDLACIIIDTDGFKEIN 254

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGD+V+  L+ QL  +  T   V R+GG+EF      +    A  +   L + I
Sbjct: 255 DTYGHDVGDQVLCLLARQLKEMVRTDDIVCRMGGDEFLIICPKTDIVGAMHVGELLHQAI 314

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
              Q  + +      + S G+A      + +  ++  AD+ +Y AKK+G+N V
Sbjct: 315 NELQYPLGNDLR-QASTSIGVAAMMDNVQTLEALLVAADKGVYEAKKAGKNCV 366


>gi|94311200|ref|YP_584410.1| diguanylate cyclase [Cupriavidus metallidurans CH34]
 gi|93355052|gb|ABF09141.1| putative signaling protein (GGDEF domain) [Cupriavidus
           metallidurans CH34]
          Length = 237

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/172 (33%), Positives = 85/172 (49%), Gaps = 4/172 (2%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQIND 144
             +   L      +   +  D L+G LN  A I    +   +  L+++  DID+FK++ND
Sbjct: 64  NRLNHRLQELAQELEYRATHDTLTGALNRGAVIDRATAALARGSLALIVIDIDHFKRLND 123

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +FGHPVGD VI  ++  L         +GR+GGEEFAA     +   AA LA+ +R+ I 
Sbjct: 124 DFGHPVGDAVICGVTACLKDTVRMEGVIGRMGGEEFAALLPDFTIDAAATLADQMRQAIA 183

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +          +T S G++      P      RAD+ALY AK+ GRNRV 
Sbjct: 184 GHRFPAPVNRE--VTASFGVSWSPQGRPFEHAYGRADEALYEAKRGGRNRVT 233


>gi|315125736|ref|YP_004067739.1| diguanylate cyclase [Pseudoalteromonas sp. SM9913]
 gi|315014250|gb|ADT67588.1| diguanylate cyclase [Pseudoalteromonas sp. SM9913]
          Length = 426

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 9/173 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           K+L +   ++  L+  D L+G LN  +F  +               S +  D+DYFK IN
Sbjct: 253 KDLQVLNEKLKTLATRDSLTGTLNRGSFFDTANHLLELSQRQKLPASFILIDLDYFKNIN 312

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH VGDKV+   +D +  +      +GR+GGEEFA     +    +  LAN +RK +
Sbjct: 313 DTYGHFVGDKVLIHFTDTVQSMIRESDLIGRVGGEEFALFLPNTGLDNSFKLANKIRKAV 372

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
            +S + +  G ++  T+S G+A    K+  ++ +   AD  LY AK  GR+RV
Sbjct: 373 VDSTLEV-DGETVIYTVSIGVASSELKDCSVTELFKVADLKLYCAKDKGRDRV 424


>gi|313673992|ref|YP_004052103.1| response regulator receiver modulated diguanylate cyclase
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940748|gb|ADR19940.1| response regulator receiver modulated diguanylate cyclase
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 435

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 88/199 (44%), Gaps = 13/199 (6%)

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNE 127
           SI + +     +  +   L    N + Q++  D ++GL N    +  L         Y  
Sbjct: 236 SIMLRVTANIRTKKLYDYLDRINNELYQMATTDPMTGLYNRRYILEQLNILNYNFERYGT 295

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
             S++  D+D FK IND +GH  GDKVI   + ++        FVGR GGEE        
Sbjct: 296 AFSVILMDLDKFKSINDTYGHDCGDKVIIDFAQRVKSSVRKTDFVGRFGGEELIVVLQNI 355

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYV 246
            E+    +   +   I NS +  S+   I  T S G+     +   I   I RAD  LY+
Sbjct: 356 DEENLYKITKKILYSIRNSSVTYSNFV-ISYTTSIGVKYCNSYYPNIDEYIKRADHLLYL 414

Query: 247 AKKSGRNRVVCFSDIENNT 265
           AK++GRNR      IEN++
Sbjct: 415 AKENGRNRAY----IENSS 429


>gi|300311036|ref|YP_003775128.1| signal transduction protein [Herbaspirillum seropedicae SmR1]
 gi|300073821|gb|ADJ63220.1| signal transduction protein containing a membrane domain, an EAL
           and a GGDEF domain protein [Herbaspirillum seropedicae
           SmR1]
          Length = 750

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 11/187 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
           G  +        ++   +  D LSGL N       L         +   L++VF D+D F
Sbjct: 296 GRDVTRRKEVEFKLRHQANYDPLSGLPNRRLLGDMLQREVASAKKHAYPLAVVFIDLDRF 355

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILAND 198
           K +ND+ GH VGD+++   + ++         V RL G+EF A         A   + +D
Sbjct: 356 KDVNDSLGHSVGDQLLVVAAQRVRASVREHDLVARLAGDEFVAVLPRLEASAALTRIGDD 415

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +   +        + I+ S GIA   H  + ++T+I  ADQA++ AK  GRN +  
Sbjct: 416 IVAALA--EPFQLGEHRVRISASVGIAIYPHDADTVTTLIGCADQAMFAAKGGGRNGLAF 473

Query: 258 FSDIENN 264
           F++    
Sbjct: 474 FTEDMRE 480


>gi|226356554|ref|YP_002786294.1| diguanylate cyclase [Deinococcus deserti VCD115]
 gi|226318544|gb|ACO46540.1| putative Diguanylate cyclase (GGDEF domain protein) [Deinococcus
           deserti VCD115]
          Length = 382

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 68/254 (26%), Positives = 107/254 (42%), Gaps = 13/254 (5%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVI--FIANIFLFYIGLTPFYGLEYILVENLSLVIISITI 78
           S S + F + +   F IF   +   F+  +    I +T  + L    +     ++  I  
Sbjct: 129 SQSTYWFAVLYVAAFLIFPTRLAKYFVRALLGLTIAITLSHLLLSPELLRGRELLGGIIQ 188

Query: 79  SLLLGYISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLG---SYNEKLSIV 132
            LL G +  S+        +R++ +   +  D L+G  N  A    L       E+ +++
Sbjct: 189 FLLAGVVLTSMQSRFGTLRDRLNAMQVVASHDALTGAANRRAAEERLQTLHRAGERYTVI 248

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
            FDID+FK++ND  GH  GD V+  ++     +     F  R GGEEF        ++E 
Sbjct: 249 LFDIDHFKRVNDEHGHATGDLVLVNVTRCARQLLPDSAFFARWGGEEFLIILPSLPKEEV 308

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             L   LR  + N       GP   +T   G+A     E    I+ RAD+A+Y  K  GR
Sbjct: 309 YELLRTLRAELRNQTF----GPQKGVTACFGVAHVRPGETPEEIVARADEAMYARKNRGR 364

Query: 253 NRVVCFSDIENNTC 266
           N V  FS +   T 
Sbjct: 365 NGVE-FSTLTPETA 377


>gi|149378320|ref|ZP_01896028.1| hypothetical protein MDG893_17212 [Marinobacter algicola DG893]
 gi|149357402|gb|EDM45916.1| hypothetical protein MDG893_17212 [Marinobacter algicola DG893]
          Length = 331

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 100/248 (40%), Gaps = 24/248 (9%)

Query: 24  PHTFMIYFSIFFSIFI-----ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITI 78
           P  F +Y  +  S F+     A  I +A +    +    F  L  +     + V++S   
Sbjct: 89  PGLFWLYPCLVTSFFLTEPRYAIFINLAAVLALMVHGVAFSSLVQMWTFAATAVVVS--- 145

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
                Y+             R+  L+ ID L+G+ N  +    L              ++
Sbjct: 146 --CCAYVFA---HRNENQRERLEHLATIDPLTGVKNRRSMDQELAMAVASASRTGISYAL 200

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           V  DIDYFK+IND +GH VGD V+  +   +         + R GGEEF     G     
Sbjct: 201 VLLDIDYFKKINDEYGHNVGDDVLVDMVALIEQNIRKSDQLFRFGGEEFVLLMPGVDSTG 260

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              + ++L+ I+          P   +T S G+A     E     + RAD+ALY AK +G
Sbjct: 261 LRAVMHNLQHIMHK----FLRHPGGQVTASFGVALLQAGEKPDDWLARADEALYEAKDTG 316

Query: 252 RNRVVCFS 259
           R+R+V   
Sbjct: 317 RDRIVYAD 324


>gi|117925008|ref|YP_865625.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Magnetococcus sp. MC-1]
 gi|117608764|gb|ABK44219.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Magnetococcus sp. MC-1]
          Length = 720

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 14/189 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           + L  +  S   +  LS  D L+ L N   F   L             ++++  D+D FK
Sbjct: 268 TDLTRIKESEENLLYLSGHDALTELPNRLLFHDRLNQTLVESADSGSIVAVLIVDLDRFK 327

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            IND+ GH VGD ++  ++ +L  +      + RLGG+EF       ++ ++AA+LA ++
Sbjct: 328 VINDSMGHEVGDSLLCEVATRLRAICPAKATLARLGGDEFGIVLPNMTQNRDAALLAQEV 387

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +    I IS      +  S G+       E  S ++  A+ A+Y AK+SGRN    +
Sbjct: 388 LTRVAQ-PITISE-VEFAVGASIGMTVYPLDGEKPSVLMRNAESAMYHAKQSGRNNFQFY 445

Query: 259 -SDIENNTC 266
            S++  NT 
Sbjct: 446 RSEL--NTA 452


>gi|19310364|gb|AAL17672.1| hypothetical protein [Methylobacterium extorquens]
          Length = 570

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 13/189 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           +   + E   +  RI+ ++  D L+GL N + F + L              +++  D+D 
Sbjct: 201 AAIDVTEQRRAEARITHMAHHDALTGLPNRALFTTRLAEVIAEHARTGAGAALLCLDLDK 260

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND  GHP GD ++  ++D++         V RLGG+EFA           + +A  
Sbjct: 261 FKLVNDTLGHPAGDTLLRAVADRITACLHGEDLVARLGGDEFAVLLRTPYAGTVSAVAGR 320

Query: 199 LRKIIENSQINISSG-PSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +   IE     +  G     I +S GIA    H     T++  AD ALY AK  G   + 
Sbjct: 321 I---IEALSHPVRLGDRECQIGVSVGIACLPEHGTDSDTLLRHADLALYRAKADG-GCIA 376

Query: 257 CFSDIENNT 265
            + +   ++
Sbjct: 377 HYFEAAMDS 385


>gi|88703914|ref|ZP_01101629.1| GGDEF family protein [Congregibacter litoralis KT71]
 gi|88701741|gb|EAQ98845.1| GGDEF family protein [Congregibacter litoralis KT71]
          Length = 503

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 95/179 (53%), Gaps = 11/179 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           IS   + EL    + + +  + D L+G +N   F S L           + LS++F D D
Sbjct: 307 ISDEKVSELEQRVSMLERQGQRDSLTGAINRGHFHSELDRLFDEATQSGQPLSLMFIDAD 366

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FKQ+ND++GH  GD+V+ +L++    + G    VGR GGEEF      S+E EA  L  
Sbjct: 367 HFKQVNDSYGHLAGDEVLKWLAEAFTKLVGDKGIVGRYGGEEFVVILPASTEAEANALGQ 426

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRN 253
            +   + N  I+ +   +I +T+SAGIA       +     +I+ ADQA+Y AK+SGR+
Sbjct: 427 TICDHVRNGHIS-AGDANIQVTVSAGIATIDKTSTLRGTRDLIFAADQAMYFAKQSGRD 484


>gi|114561977|ref|YP_749490.1| diguanylate cyclase with PAS/PAC sensor [Shewanella frigidimarina
           NCIMB 400]
 gi|114333270|gb|ABI70652.1| diguanylate cyclase with PAS/PAC sensor [Shewanella frigidimarina
           NCIMB 400]
          Length = 374

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 13/187 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132
           L +G +    L      YN++  L+  D L+GL N  AF  +L        ++++ L ++
Sbjct: 186 LFIGIMHN--LTTHKAEYNKLRHLAHTDKLTGLSNRHAFDDALQTNWNDSINHDQPLCLI 243

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQE 191
             D+DYFK  ND +GH  GDK +  ++  L  V         R GGEEF      S+   
Sbjct: 244 IIDVDYFKMFNDQYGHVNGDKCLQKIAQVLAEVLPSNNAMAARYGGEEFVVILPNSNPLT 303

Query: 192 AAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAK 248
           A  +A ++++ I      +I       I++S GIA     +    + ++  AD ALY AK
Sbjct: 304 AEYIAKNIQRRINQLSFTDIGLPAQTKISVSQGIACERSGQYRTPTALVCAADTALYRAK 363

Query: 249 KSGRNRV 255
            +GRNR+
Sbjct: 364 STGRNRI 370


>gi|328880499|emb|CCA53738.1| 8-amino-7-oxononanoate synthase [Streptomyces venezuelae ATCC
           10712]
          Length = 1075

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 84/182 (46%), Gaps = 10/182 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDID 137
           ++   + E       ++  +  D L+GL N    +  +     +         ++F D+D
Sbjct: 185 LTLRDVTEQRKLERELTHRAFHDSLTGLPNRVLLLERVERALLRGRRESTLTCMLFVDLD 244

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILA 196
            FK +ND  GH VGD+++  ++ +L  V        RLGG+EFA    G+ E ++A  LA
Sbjct: 245 DFKVVNDTMGHSVGDELLVAVARRLTSVLRLTDTAARLGGDEFAVLIEGARETRDAEALA 304

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            ++   +     +++ G  + ++ S G+A          ++  AD ALY AK +G+ R  
Sbjct: 305 AEIVHTLSQ-PFHLTDGA-VSVSTSVGVATVLDSAHAEELLGHADLALYAAKAAGKKRWR 362

Query: 257 CF 258
            F
Sbjct: 363 LF 364


>gi|193222304|emb|CAL61559.2| conserved hypothetical protein; putative membrane protein; putative
           PAS/PAC, EAL, GGDEF domains [Herminiimonas
           arsenicoxydans]
          Length = 869

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 11/180 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             + +  ++  +I   +  D L+ L N    +++L             L+++F D+D+FK
Sbjct: 422 RDITKRKMTELQIEYQAMHDMLTDLPNRRYLVNTLATAMETSRQQQSSLTMLFCDLDFFK 481

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND  GH  GD+ +  +S ++V V     FV R GG EF      SS  E++I A  + 
Sbjct: 482 SVNDTHGHDFGDQCLLEISKRIVAVLPESDFVARFGGNEF-VILTNSSLAESSIKAKAIA 540

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFS 259
           + +    +      ++ I +S GIA+      + + +I  AD A+Y AK+ GRNR   + 
Sbjct: 541 RAVSERLVF--ENVAVKIQVSIGIAQLSPDHQVPADLIREADAAMYQAKERGRNRTEIYD 598


>gi|170289593|ref|YP_001739831.1| diguanylate cyclase [Thermotoga sp. RQ2]
 gi|170177096|gb|ACB10148.1| diguanylate cyclase [Thermotoga sp. RQ2]
          Length = 443

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 13/227 (5%)

Query: 39  IATVIFIANIFLFYIGLTPFYG-LEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           I   IF    F  Y  +  F+  L ++      +VI+   I   L     ++L EL+   
Sbjct: 196 IILTIFGELSFTLYSDVCGFFNFLGHVFRLFSYMVILRGVIVNALANPVQALLFELYEEK 255

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +++  D L+GL N + F   +          N  LS +  D+D FKQIND +GH  
Sbjct: 256 EKLKEIAHRDSLTGLFNRAFFNEWIQDQVRKAQFQNVPLSFIMIDVDNFKQINDTYGHLT 315

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDKV+ F++  +     +  F  R GG+EF      +S+Q+A  +A+ +R+ I N     
Sbjct: 316 GDKVLRFVARCISDSIRSSDFAVRYGGDEFLVVLYNTSKQQAEQVASRIREKIRN----- 370

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S    + + IS G+AE    +     + +AD+ +Y  K+  ++ VV 
Sbjct: 371 SDELGVDVDISYGVAELKPGDNYLKFLQKADEEMYGMKRERKSPVVI 417


>gi|217972779|ref|YP_002357530.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Shewanella baltica OS223]
 gi|217497914|gb|ACK46107.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS223]
          Length = 1410

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 9/185 (4%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQIND 144
            S +         + +L+  D L+GL N S    +L +   +    +++  D+D FK+IND
Sbjct: 962  SDISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLSNLVNREIAHALMVLDLDNFKRIND 1021

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKII 203
            + GH +GD ++  ++ ++  +      + RLGG+EFA     GS    +A +AN +   I
Sbjct: 1022 SLGHQIGDTLLKLVAARIKSLLPKSTSIYRLGGDEFAIVLDKGSDISASAAIANRV---I 1078

Query: 204  ENSQINIS-SGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDI 261
            E  +     S   + + +S GI      E     ++ +AD A+Y AK +G N    +S+ 
Sbjct: 1079 EGLKPAFEVSNEQLVLGLSIGIVLFPEDEQSEQALLRKADIAMYHAKSAGGNCYQFYSES 1138

Query: 262  ENNTC 266
             N   
Sbjct: 1139 LNQHA 1143


>gi|34495546|ref|NP_899761.1| two-component response regulator [Chromobacterium violaceum ATCC
           12472]
 gi|34330253|gb|AAQ57770.2| probable two-component response regulator [Chromobacterium
           violaceum ATCC 12472]
          Length = 405

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 87/173 (50%), Gaps = 10/173 (5%)

Query: 93  LFISYNRIS-QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
               Y ++   ++  D L+GLLNHS         I       + LS+   D+DYFKQ+ND
Sbjct: 232 RARRYRKLRSYIAN-DSLTGLLNHSHLHGQLDSAILRARRVGQPLSLAMLDLDYFKQVND 290

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           N+GH VGD+V+  L+  L         VGR GGEEFA    G+   +A  +   LR+   
Sbjct: 291 NYGHQVGDEVLLTLARFLKERLRRTDLVGRYGGEEFAIVLGGTPADKAHGMLETLRQDFG 350

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +  +    +   T SAGI+        + ++ +AD+ LY AK +GRNRVVC
Sbjct: 351 LLEQQVGE-RTFRQTFSAGISSLASAATSTELVQQADEMLYRAKAAGRNRVVC 402


>gi|300899213|ref|ZP_07117488.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1]
 gi|300357169|gb|EFJ73039.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1]
          Length = 251

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 11/202 (5%)

Query: 69  LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L+L+    T  LL+  Y+   ++  +++  + +   +  D L+ L N  A          
Sbjct: 49  LTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAK 108

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              ++    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 109 LCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEF 168

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIY 238
                G+S  EAA +A  +R  +   ++ I+   +I I+ S G++               
Sbjct: 169 CVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQFQS 228

Query: 239 RADQALYVAKKSGRNRVVCFSD 260
            A + LY+AK++GRNRV   SD
Sbjct: 229 LAYRRLYLAKQAGRNRV-FASD 249


>gi|292491335|ref|YP_003526774.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291579930|gb|ADE14387.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 694

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 75/187 (40%), Gaps = 11/187 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
              ++E       +      D L+ L N       L             ++++F DID F
Sbjct: 246 ARDIRERKHYEQALQHRVTHDALTHLPNRILLRDRLSRALINAERNQHLIAVLFLDIDNF 305

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           KQIND  GH  GD  +  +  +L     T   VGR GG+EF        +  +  I+   
Sbjct: 306 KQINDALGHLAGDNCLRMVGQRLAQCIRTNDTVGRYGGDEFLIILGNLHAPADVEIIIKK 365

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +R  +  SQ    +   + IT+S G +           ++  +D A+Y AK +GR++   
Sbjct: 366 IRAAL--SQPFRINNHDVFITLSIGASLYPQDGGDEENLLKSSDTAMYTAKHTGRDQFRF 423

Query: 258 FSDIENN 264
           ++    +
Sbjct: 424 YAPKMKD 430


>gi|289208300|ref|YP_003460366.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
 gi|288943931|gb|ADC71630.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix]
          Length = 325

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 8/164 (4%)

Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            + +  D L+G+ N  A        I     ++  LS++  DID+FK IN  +GH  GD+
Sbjct: 157 REAAYTDPLTGIANRRALFEQAEHEIERAHRHHRPLSLLVLDIDHFKTINTQYGHAQGDE 216

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
            +   +     +     F+GR+GGEEF      + +  A  L   + + I    +     
Sbjct: 217 ALRQFTQCCARLLRDTDFMGRIGGEEFVMLLPETDQLGAEQLGARIVEAIPTLDVP-GMN 275

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               +T+S G A R   E    ++ RAD AL  AK+SGRNR+  
Sbjct: 276 NEHRMTVSIGAATRLEGEGFEDLLVRADDALSTAKRSGRNRLRV 319


>gi|207738819|ref|YP_002257212.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
 gi|206592187|emb|CAQ59093.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
          Length = 1178

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 22/187 (11%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQ 141
            + E  ++  R++Q + +D L+GL N +                  +  +   +ID FK 
Sbjct: 737 DVTEQEMTRARLAQHATVDPLTGLPNRTLLADRVQQAVEMAARQRSRFYVALINIDRFKV 796

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA----AILAN 197
           +ND+ GH +GD+V+  ++++L     T   V R GG+ FA     +          + A 
Sbjct: 797 VNDSLGHLLGDEVLRRIAERLRDAADTVDTVARFGGDVFALVISHAGSHGVDLGFDLFAE 856

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +R            G  + +T S G+AE   H     T++  A+ A+Y AK++GRNR+ 
Sbjct: 857 PIR----------VEGHEVFVTASIGVAEYPAHGTDSETLVRHAEMAMYYAKQNGRNRLE 906

Query: 257 CFSDIEN 263
            F+   +
Sbjct: 907 FFAPEMD 913


>gi|121594619|ref|YP_986515.1| diguanylate cyclase [Acidovorax sp. JS42]
 gi|222110793|ref|YP_002553057.1| diguanylate cyclase [Acidovorax ebreus TPSY]
 gi|120606699|gb|ABM42439.1| diguanylate cyclase [Acidovorax sp. JS42]
 gi|221730237|gb|ACM33057.1| diguanylate cyclase [Acidovorax ebreus TPSY]
          Length = 257

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 9/167 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGD 152
           + +LS  D L+GL N     + L    ++++       ++  DID+FKQ+ND  GH  GD
Sbjct: 50  LCELSLKDPLTGLANRRHVRAVLEREIDRVARSGEAALLLMLDIDHFKQVNDRHGHLAGD 109

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L         V R GGEEFA            ++A  +R+ IE + + IS 
Sbjct: 110 IVLQSVARTLESCVRPMDTVARYGGEEFAIVLPACQFGFGRVIAERVRRAIEATPVRISP 169

Query: 213 GPSIHITISAGIAERCHKEPISTII--YRADQALYVAKKSGRNRVVC 257
             ++++T+S G A        +T +   RAD  LY AK  GRN +  
Sbjct: 170 SLTLNVTVSIGGAFALQWIRSTTALWADRADAELYKAKLGGRNCISI 216


>gi|91792378|ref|YP_562029.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91714380|gb|ABE54306.1| diguanylate cyclase/phosphodiesterase [Shewanella denitrificans
           OS217]
          Length = 678

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
             IL +   + N++ +++  D L+GL N +  + +L         +    +I F D+D F
Sbjct: 232 NQILLQFSQAQNKLRKMATRDPLTGLPNRALLLETLSVTIQRSRVHKRSFAIFFIDLDRF 291

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K +ND+ GH +GD+ +A ++  L    G    V RLGG+EF   A    +  +AA     
Sbjct: 292 KNVNDSLGHTIGDQFLARIARILERGIGDKGSVARLGGDEFVILADEIQTPSQAADFVGK 351

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           L   + N+ I ++   SIH   S GI+           +I  AD A+Y AK +G N+   
Sbjct: 352 LLSQL-NTPIQLNE-HSIHPAASIGISIYPDDCASAEDLIRHADIAMYSAKAAGSNQWAF 409

Query: 258 FSDIENNTC 266
           F        
Sbjct: 410 FKQQMTERA 418


>gi|238797654|ref|ZP_04641150.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia mollaretii ATCC 43969]
 gi|238718518|gb|EEQ10338.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia mollaretii ATCC 43969]
          Length = 664

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 8/185 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFK 140
           SG+ + +   +  R+  L+  D ++GL N  A    + S  +      + I++ D+D FK
Sbjct: 218 SGTDITKERRAQERLRILANTDMITGLPNRHAIHERINSAIQTRGETSVGIIYLDLDNFK 277

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND++GH  GD+++  +S  ++        + RLGG+EF      +S  E       + 
Sbjct: 278 KVNDHYGHMFGDRLLKDVSLAILSCLEENEMLARLGGDEFIVLVENASLTELEATTQRIL 337

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +++          ++   S GIA    H + +  II  AD A+Y AK++G+     FS
Sbjct: 338 NRMKS--PFRVGLIEVYTGCSIGIALCPEHGDTLENIIRSADTAMYTAKENGKRTYSIFS 395

Query: 260 DIENN 264
              N 
Sbjct: 396 QEMNK 400


>gi|323493757|ref|ZP_08098876.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
 gi|323311991|gb|EGA65136.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
          Length = 377

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 81/173 (46%), Gaps = 9/173 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           K+L     ++ +LS  D L+ L N    I  L +Y        E L  +  D+DYFKQ+N
Sbjct: 193 KQLSRVNKQLEELSLTDSLTKLPNRRCAIRKLKAYWQESTHNQEPLVCIMIDVDYFKQVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+++  LS  L   F +   V RLGG+EF      +       +A   R  +
Sbjct: 253 DTAGHDAGDRLLVELSHTLADSFRSDDLVCRLGGDEFFVICPNTDLAGGMHIAELTRNKV 312

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
               + +        +IS G+ ER       + +I  AD A+Y++K +GRNRV
Sbjct: 313 NQMLVPVGESVWRG-SISVGVGERTPTMNDFNDLIKEADNAVYLSKSAGRNRV 364


>gi|242277738|ref|YP_002989867.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
 gi|242120632|gb|ACS78328.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638]
          Length = 262

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 101/228 (44%), Gaps = 15/228 (6%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL----FIS 96
               ++ I +  + L   Y     +    S+ ++ + +S LL       + +L       
Sbjct: 24  CFTALSIISILTVVLIGLYTDVSKVWTTASIALLGVFMSALLVVFLEIKISKLISGYEAR 83

Query: 97  YNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
            N +  LS +D L+GL N                 +    SI+  D+D FK INDNFG+ 
Sbjct: 84  INDLENLSSVDKLTGLANRLRLDEIFNYEIGKAQRHGNSFSILLLDLDRFKNINDNFGND 143

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           VGDKV+   +  L         +GR  GEEF   A     Q A +LA+ +RKII  +   
Sbjct: 144 VGDKVLQETAKLLKNNLRKTDTIGRWSGEEFLIIAPEIGHQNAMLLADKIRKIIAGNYYE 203

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                   +T S GI+    ++   ++  RAD+AL +AK +GRNRVV 
Sbjct: 204 SVG----TVTCSIGISSFHDEDSKESMTDRADRALDMAKDAGRNRVVY 247


>gi|190895432|ref|YP_001985724.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190699377|gb|ACE93461.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 298

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 96/206 (46%), Gaps = 12/206 (5%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           +  +   + +N  ++ I+  I+ L     G  +++     ++  + S  D L+G+ N   
Sbjct: 98  WLWMTEAVQQNGWMLCIASDITRLRA--QGRTVRQ---DRDQAIKASYTDELTGVANRRF 152

Query: 118 FISS------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
            ++          +     +  FDID FKQIND FGH  GD V+   + ++         
Sbjct: 153 VMARVDDMLAAARHGGSGCLAVFDIDKFKQINDRFGHHAGDLVLRDFAHRIHQNVRRNDC 212

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
            GR+GGEEF      +S ++A  +   +  +I  S+  ++  P    T SAGIA     +
Sbjct: 213 FGRVGGEEFLLVMPSTSPEDALAMVERMLTVIRFSR-PLADSPDFSYTCSAGIAASLPID 271

Query: 232 PISTIIYRADQALYVAKKSGRNRVVC 257
             S +  RADQALY AK SGR+RV  
Sbjct: 272 SASELYRRADQALYDAKMSGRDRVRA 297


>gi|209549382|ref|YP_002281299.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535138|gb|ACI55073.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 760

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 98/217 (45%), Gaps = 22/217 (10%)

Query: 70  SLVIISITISLL-LGYISGSILK----------ELFISYNRISQLSRIDCLSGLLNHSAF 118
           SL+ + +   ++ +G+++ S  +          +L  +  R+  LS  D L+GL N    
Sbjct: 285 SLLALCVVAPIIWIGFLTKSRQRTIEKLRLHKKKLVRARQRLEYLSLHDALTGLANRRFV 344

Query: 119 ISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              +           L ++  D+D FK+IND  GH  GD V+   + +L  + G      
Sbjct: 345 DQMISQPRRPDGEDCLILIHIDLDRFKEINDTKGHAGGDMVLQTTASRLADLTGPTDVAA 404

Query: 174 RLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCH 229
           R+GG+EF  A   ++ + EAA LA  +   ++  Q  +  G    +  S G+A   E   
Sbjct: 405 RIGGDEFIFARWSANPEPEAAELAKQIVDALQ--QPILIDGAEYVVGASVGVAWETEPAS 462

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              +  ++  AD ALY AKK+GR R   F++   +  
Sbjct: 463 GRDLGQLLLNADLALYEAKKAGRGRAAIFTEELRSAA 499


>gi|119478352|ref|ZP_01618360.1| sensory transduction protein kinase [marine gamma proteobacterium
           HTCC2143]
 gi|119448561|gb|EAW29807.1| sensory transduction protein kinase [marine gamma proteobacterium
           HTCC2143]
          Length = 413

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 69/278 (24%), Positives = 113/278 (40%), Gaps = 46/278 (16%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFI-------ANIFLFYIGLTPFYGLEYIL 65
           L     L+ F      +Y S++  + I   +F        A   L    +  F  L    
Sbjct: 149 LVQSMPLKPFPGLIMSLYASVWMGLMILVGLFFLLRRNAEAEASLTLCIVFSFITLAKFD 208

Query: 66  VENLSLVIISIT-ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
              +S ++ S T ++++LG +  S             +++  D L+GLL   A    L  
Sbjct: 209 QPLISSIMFSATGLTMILGLLKSSF------------EMAYQDELTGLLGRRALNEKLSG 256

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
              + +I   DID+FK+ ND  GH VGD V+  +++ +    G      R GGEEF    
Sbjct: 257 LGNRYAIAMIDIDHFKKFNDTHGHDVGDDVLKVVANHIAETTGGG-IPYRYGGEEFCVVF 315

Query: 185 LGSSEQEAAILANDLRKIIENSQINISS------------------------GPSIHITI 220
            G S +        +R+ I + +I +                          G ++ +TI
Sbjct: 316 PGKSLKPCIPHLEAVREAIGSHRITLRDRKNRPKSAQTGAQKRAGTRTKARQGKTVSVTI 375

Query: 221 SAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVC 257
           S G+AER     +   ++  AD+ALY AK++GRN  V 
Sbjct: 376 SIGVAERTDVVDMPDQVMKNADKALYKAKQNGRNCTVL 413


>gi|146310517|ref|YP_001175591.1| diguanylate cyclase AdrA [Enterobacter sp. 638]
 gi|145317393|gb|ABP59540.1| diguanylate cyclase [Enterobacter sp. 638]
          Length = 371

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/232 (26%), Positives = 105/232 (45%), Gaps = 15/232 (6%)

Query: 37  IFIATVIFIANIFLFYIGLT---PFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
           +F A  +  A   L  + LT   P + L  + +  LSL ++ +   L+  ++S      L
Sbjct: 142 LFGAGAMITAITTLITLQLTGTTPAFTLTPLEL-WLSLPVL-VLYPLIFAWVSHQTAIRL 199

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNF 146
                R+  +S  D ++G+ N   +   L          +   +I+  DID+FK IND +
Sbjct: 200 AEHKRRLELMSTRDGMTGVFNRRHWEILLRNEYDACLRGHRDAAILIIDIDHFKDINDTW 259

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD+ I  ++ QL +       +GR GG+EFA    G+  + A    + + + +   
Sbjct: 260 GHDVGDEAIIAVTRQLQLTLRAGDLIGRFGGDEFAVVMSGTPAESAIAAMSRVHERLAAL 319

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
            +  +  P + + IS G+A    +       +  AD ALY AK +GRNR   
Sbjct: 320 TLPCA--PQVRLRISVGVAPLTPEFGHYREWLKAADVALYKAKNAGRNRTEV 369


>gi|255594865|ref|XP_002536183.1| conserved hypothetical protein [Ricinus communis]
 gi|223520571|gb|EEF26198.1| conserved hypothetical protein [Ricinus communis]
          Length = 394

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 116/290 (40%), Gaps = 27/290 (9%)

Query: 2   TRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIF---LFYIGLTPF 58
           T +L++ +     +            M+  ++   + ++ VI +A +    LF   L   
Sbjct: 93  TENLRELIETAALNSLGEVQQKSLRAMLISALLAVMAVSVVIGLAYVLRRSLFRPMLAVM 152

Query: 59  YGLEYILVENLS-----------LVIISITISLLL--GYISGSILKELFISYNRISQLSR 105
             ++ I V NL+           +  + + + LL         +  E       + +LS+
Sbjct: 153 RQIDEIAVGNLTTPPPIPHAGREMRELFLRLDLLREQQRFKRHLEMERKSMTEELRRLSQ 212

Query: 106 IDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+GLLN  A   ++          +   +I+ FDID+FK IND +GH VGD V+   
Sbjct: 213 TDALTGLLNRRALEDAVEELLATPTARSRGFAIIMFDIDHFKSINDRYGHAVGDMVLQRT 272

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L           R GGEEF       +E  A   A  LR+ +   Q  +S    + +
Sbjct: 273 AQILGPCLRAADLFARYGGEEFIVVMGDVTEASARSTAERLRETLA--QAVVSDEHGLKV 330

Query: 219 TISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           T S G+  +     E    ++  AD  LY AK++GRN V         T 
Sbjct: 331 TASFGVDWQAQCMFENWEKLVVVADNRLYQAKRNGRNLVCSSEKTTGQTA 380


>gi|197337031|ref|YP_002157745.1| ggdef domain protein [Vibrio fischeri MJ11]
 gi|197314283|gb|ACH63732.1| ggdef domain protein [Vibrio fischeri MJ11]
          Length = 483

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 110/229 (48%), Gaps = 14/229 (6%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL-GYISGSILKELF 94
            +F+  V  +  I L     + +    YI +  +  +++   I L+   Y  G +  E  
Sbjct: 256 GVFVKKVSDLPFIILVTKAKSHWVTPLYIAISTVFALLVIFAIFLVKNAYYFGKLSSE-- 313

Query: 95  ISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
                 S+L+  D L+G  N         +FI +  + N+  S+  FDIDYFKQIND +G
Sbjct: 314 --AEHYSKLALFDDLTGSCNRRCFEAKVLSFIQNYHAKNQTFSVALFDIDYFKQINDTYG 371

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD+V+   S     +  +     RLGG+EF       + +EA ++ N L   I   +
Sbjct: 372 HEIGDEVLRLFSRACENICESDDHFARLGGDEFVMLLSDKNIEEATVILNQLLDSIRMIE 431

Query: 208 INISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
           I I +G  + +T S G++E          ++ RAD+ALY AK+ GRN+V
Sbjct: 432 IRI-NGQLVQLTSSIGVSEMNDDVFDACKLLSRADEALYEAKRLGRNQV 479


>gi|187935043|ref|YP_001887408.1| ggdef domain protein [Clostridium botulinum B str. Eklund 17B]
 gi|187723196|gb|ACD24417.1| ggdef domain protein [Clostridium botulinum B str. Eklund 17B]
          Length = 695

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 111/220 (50%), Gaps = 27/220 (12%)

Query: 64  ILVENLSLVIISIT--------------ISLLLGYISGSILKELFISYNRISQLSRIDCL 109
           I+++N S+ +IS+               + +L  YI+ ++  +   ++N +   ++ D L
Sbjct: 478 IIIKNKSIGVISVQSYRKNAYTRNELNELKILSSYIAIAL--QNGKTFNTVEHFAKYDSL 535

Query: 110 SGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +G+ N           F + L +  +  SI+  D+DYFKQIND +GH +GD V+  +S  
Sbjct: 536 TGMFNRNVILTQGERIFNNKLET-KQTFSIIMIDVDYFKQINDRYGHDIGDIVLRDISSI 594

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITI 220
           +         +GR GGEEF       + +EA  +A+ +RK +EN + +  +      +T+
Sbjct: 595 IKSEIRNTDSLGRYGGEEFLILLPNINLEEAKKIADRIRKSVENYKYHYLTSEKHNRVTL 654

Query: 221 SAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           S G+ E    E      + +AD+ALY+AK  GRNR + +S
Sbjct: 655 SLGVYEFNKNEFDFFEGVKKADKALYMAKSLGRNRAIEYS 694


>gi|146283106|ref|YP_001173259.1| GGDEF domain-containing protein [Pseudomonas stutzeri A1501]
 gi|145571311|gb|ABP80417.1| GGDEF domain protein [Pseudomonas stutzeri A1501]
          Length = 396

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 106/262 (40%), Gaps = 26/262 (9%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63
           +L     +W   ++   S  P   ++   + F              L  +        + 
Sbjct: 131 TLLAMSELWRSRQRLSVSLRPAMGLMLLHVSF------------YLLRMVVDRGQPFGDA 178

Query: 64  ILVENLSLVII-SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI--- 119
             V   + VI  ++  ++ + +++ ++++E   +  +    S  D L+G+ N  +FI   
Sbjct: 179 DQVSFFAFVIFETLLYAIGISFVTLAMVRER--AEQQYRHASLSDPLTGIGNRRSFIDAG 236

Query: 120 ----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   +  E ++++  D+D+FK++ND FGH  GD+ +      +          GR+
Sbjct: 237 QALLQRCRARGEPVTLLLCDLDFFKRLNDTFGHQAGDRALIDFGQVIARRMRRQDVFGRI 296

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           GGEEFA     +       +A  +R                 +++S G+A    +  +  
Sbjct: 297 GGEEFACLLADADALVGREVAERIRGEFAAMPF----AEQGQLSVSIGVATTTSRYELDE 352

Query: 236 IIYRADQALYVAKKSGRNRVVC 257
           ++ +AD+ALY AK +GRN    
Sbjct: 353 LMAQADRALYAAKAAGRNCTRL 374


>gi|70728517|ref|YP_258266.1| response regulator WspR [Pseudomonas fluorescens Pf-5]
 gi|68342816|gb|AAY90422.1| response regulator WspR [Pseudomonas fluorescens Pf-5]
          Length = 333

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 11/176 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+GL N   F   L            +LS++  D+DYFK  N
Sbjct: 155 QQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRAMREQSQLSLLMIDVDYFKTYN 214

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD+ +  ++  +            R GGEEF      +S   A ++A  LR+ 
Sbjct: 215 DTFGHLEGDEALRKVATAIREASSRPSDLPARYGGEEFVLVLPNTSPGGARLVAEKLRQT 274

Query: 203 IENSQINISSGPSI-HITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E  +I   +      +TIS G++            +I  AD+ LY+AK +GRN+V
Sbjct: 275 VEALKIPHIAPVEGASLTISIGLSTVTPQPNSHCRQLISAADKGLYLAKNNGRNQV 330


>gi|34498882|ref|NP_903097.1| hypothetical protein CV_3427 [Chromobacterium violaceum ATCC 12472]
 gi|34104733|gb|AAQ61090.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 662

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 93/187 (49%), Gaps = 11/187 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136
            +S   + +L  +  R S L+  D L+GL N +         +        +++++F D+
Sbjct: 223 LVSEVDITDLKHAEARASFLANHDVLTGLPNRNGIRSELLPHLQQALRNGRQVALMFIDL 282

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK +ND+ GH  GD+++  ++ +LV + G      RLGG+EF      S+ Q A    
Sbjct: 283 DRFKNVNDSLGHACGDELLIRMAGRLVGLLGHDEKAARLGGDEFLVML--SAPQVAERAE 340

Query: 197 NDLRKIIENSQINIS-SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
              R+I++   + +   G  + ++ S GI+    +E  +  ++  AD A+Y AK +GRN 
Sbjct: 341 ALARRILQALSVPMRLEGMDVGVSASIGISVCEGRELDLEQMMRHADLAMYAAKDAGRNN 400

Query: 255 VVCFSDI 261
           ++ F+  
Sbjct: 401 LMFFTPA 407


>gi|78047541|ref|YP_363716.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78035971|emb|CAJ23662.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 983

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 85/172 (49%), Gaps = 10/172 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           ++L  +   +S  +  D L+GLLN +  +++L             L++V  D+D+FK +N
Sbjct: 802 RDLEAARAELSLKATHDELTGLLNRAGILAALREMLLHAEHTGRPLAVVLIDLDHFKLVN 861

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD V+A +  ++  +      +GR GGEE  A   G +      L      I 
Sbjct: 862 DQHGHLAGDAVLAGVGRRMDTLMRGDDRIGRYGGEELLALLPGLNLDATHRLDALHHGIC 921

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +  I    G  +H+T S G+A     E +  ++ RAD ALY AK+SGRNR+
Sbjct: 922 GDYPI---DGGWLHVTCSVGVAWFQRGETLEQLLARADAALYRAKRSGRNRI 970


>gi|23015361|ref|ZP_00055139.1| COG5001: Predicted signal transduction protein containing a
           membrane domain, an EAL and a GGDEF domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 916

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 12/191 (6%)

Query: 84  YISG--SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFD 135
           Y SG    +     + + I  L+R D L+GL N       L          +   ++F D
Sbjct: 463 YFSGIMRDISARKEAESNIRFLARHDALTGLANRVVLREKLEEILPETGARQLHCLLFID 522

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAI 194
           +D FK +ND  GH  GD+++  ++ +L  + G    V R GG+EF   A    S ++AA 
Sbjct: 523 LDNFKVVNDILGHSFGDRLLVEVAGRLRSIEGGRNIVCRHGGDEFILLAPDIQSREKAAE 582

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253
           LA  +  ++ +S        +I +  S GI+          T+I +AD A+Y AK+ GR 
Sbjct: 583 LAERVLAVMSDS--FAIDAQAIEVGCSIGISMAPDDGDKAETLIRKADIAMYKAKEKGRL 640

Query: 254 RVVCFSDIENN 264
               F+   + 
Sbjct: 641 GFQFFTGAMDR 651


>gi|312959064|ref|ZP_07773583.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           fluorescens WH6]
 gi|311286834|gb|EFQ65396.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           fluorescens WH6]
          Length = 497

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 91/187 (48%), Gaps = 12/187 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           L L ++    L+  F +   +S+L+  D L+GL N       L           E L+++
Sbjct: 308 LWLTWMLRRELRRRFRAEQVLSELAATDALTGLANRRILDERLRLEWDRAQRSTEPLTLL 367

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
             D+D+FK  ND  GH  GD+ +  ++  +   +        R GGEEFA     +  + 
Sbjct: 368 MIDVDHFKAFNDRHGHQGGDEALRTVAQVIGSNIRRPADLAARYGGEEFAVVLPHTDTKG 427

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKK 249
           A ++A  +R  +E  ++   +G    IT+S G++      +  +  ++  ADQALY AK+
Sbjct: 428 ALVIAEHIRSSVE--RLPRVAGDERPITVSIGLSTWHKRSRLSLEALLLSADQALYEAKR 485

Query: 250 SGRNRVV 256
           +GRNR+V
Sbjct: 486 AGRNRIV 492


>gi|316934609|ref|YP_004109591.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
 gi|315602323|gb|ADU44858.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1]
          Length = 406

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 108/262 (41%), Gaps = 20/262 (7%)

Query: 14  CHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI 73
           C       +     ++Y ++               F     L     + Y+      L++
Sbjct: 123 CEIAAHYQYVIIPTILYTNVSLHRLQFRFALGVTCFAIVSHLVVLSTVSYVSTTETILIV 182

Query: 74  ISIT----ISLLLGYISGSILKELFIS--YNRISQL-----SRIDCLSGLLNHSAFISSL 122
             I     I++++        +  +++   +R+  L     +R D L+GL N      ++
Sbjct: 183 AQIMTCAYITMIVNVTMDRDQRRAYLASLRDRLCHLEAAEVARRDPLTGLPNRLKLERAI 242

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-R 174
                        +S++  D D+FK +ND +GH +GD  +  ++  +         +  R
Sbjct: 243 ADLWAGGRDAAAMVSVIMVDFDHFKSLNDRYGHSIGDLCLRQVAALISAELPADDSLAVR 302

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPI 233
            GGEEF     G    +A  LA  +R+ +E++    + G  + IT S G+A         
Sbjct: 303 YGGEEFLLVLPGMPSSDAVRLAERIRRKVEDASAGNAFGAELAITASFGVAGALISDLSS 362

Query: 234 STIIYRADQALYVAKKSGRNRV 255
            ++I  AD+ALYVAK++GRNRV
Sbjct: 363 ESLIAAADKALYVAKRNGRNRV 384


>gi|84385152|ref|ZP_00988184.1| Sensory box/GGDEF family protein [Vibrio splendidus 12B01]
 gi|84379749|gb|EAP96600.1| Sensory box/GGDEF family protein [Vibrio splendidus 12B01]
          Length = 353

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 17/180 (9%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--------EKLSIVFFDI 136
           ++ + +    +   R+  L   D L+G  N   F   L  Y+            +   D+
Sbjct: 170 VTFTDISRRKVLERRLRMLVDTDSLTGCWNRRRFDKDLNHYSNLAERYGYTHSCLALIDL 229

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK INDN GH  GD  +  +++ L         V R+GGEEFA     ++  EA    
Sbjct: 230 DHFKAINDNHGHDQGDSALKEVAELLRNNSRDTDIVARVGGEEFAILMPETNLAEAFEAM 289

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             L+++I       + G ++++T+S+G++E   +         AD+ALY AK +GRNRV 
Sbjct: 290 YRLKEVI-------TKGTTLNLTVSSGVSEIQAQ--AEATYRSADKALYRAKGNGRNRVC 340


>gi|115524367|ref|YP_781278.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
 gi|115518314|gb|ABJ06298.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53]
          Length = 587

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/256 (22%), Positives = 102/256 (39%), Gaps = 18/256 (7%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIF-LFYIGLTPFYGLEYILVENLSLVIISITISL 80
           F+P   ++      ++ + T++F   +     +       +E    +N+ +   S  I  
Sbjct: 317 FTPIALLLTVMTAAAVALVTILFRRVVLDRLAVVEAAARRVEVGDFDNIPIDRGSDEIGR 376

Query: 81  LLGYISG---------SILKELFISY-NRISQLSRIDCLSGLLNHSAF-------ISSLG 123
           L   +SG          +L++L      ++ +L+ ID L+ + N   F       ++   
Sbjct: 377 LSRTLSGMAQAVHDHTQVLEDLVNERTEKLRRLANIDLLTEIPNRRGFTYVFEQWLAKPA 436

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
           S      ++  D+D FK +ND FGH  GD+++   + +L  +        R GG+EF   
Sbjct: 437 SNGRAAGLLLIDLDDFKDVNDAFGHQAGDRLLCETARRLSALLSDRDSCARWGGDEFVVL 496

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
            +         L   +   I  + I    G  I +T+S G         I      AD A
Sbjct: 497 VVDCDHDGLRALCARMVGAINAAPIRCDDGQEIALTVSIGACRVGSGSSIDLAFAEADAA 556

Query: 244 LYVAKKSGRNRVVCFS 259
           LY AK++GRNR   F 
Sbjct: 557 LYTAKRAGRNRFALFD 572


>gi|284988886|ref|YP_003407440.1| diguanylate cyclase [Geodermatophilus obscurus DSM 43160]
 gi|284062131|gb|ADB73069.1| diguanylate cyclase [Geodermatophilus obscurus DSM 43160]
          Length = 942

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 4/170 (2%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNF 146
           L E   +  ++ + +  D L+ L N     ++L          ++   D+D FK++ND  
Sbjct: 455 LLETERAAGQLRRQAYEDPLTHLPNRRYAEATLDGLLGSGTTPALAVVDVDRFKEVNDAV 514

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD V+  +++ LV        V R  G+EF      ++ ++A       R+ +  +
Sbjct: 515 GHAGGDDVLRRVAEILVAGCRDTDEVCRWAGDEFVVLLPDTTAEQAEHALERCRRAVAET 574

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               + G  + +TIS GIA     +   T+   AD  LY AK++GR+RVV
Sbjct: 575 DW-AALGLPVPVTISVGIASATRGDDRRTLFAAADGVLYDAKRTGRDRVV 623


>gi|169797220|ref|YP_001715013.1| hypothetical protein ABAYE3236 [Acinetobacter baumannii AYE]
 gi|213155986|ref|YP_002318031.1| ggdef domain/eal domain protein [Acinetobacter baumannii AB0057]
 gi|215484661|ref|YP_002326896.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|239500742|ref|ZP_04660052.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii
           AB900]
 gi|301512846|ref|ZP_07238083.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii
           AB058]
 gi|301594190|ref|ZP_07239198.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii
           AB059]
 gi|332851275|ref|ZP_08433348.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332866144|ref|ZP_08436859.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
 gi|169150147|emb|CAM88041.1| conserved hypothetical protein; putative membrane protein
           [Acinetobacter baumannii AYE]
 gi|193076343|gb|ABO10999.2| putative membrane protein [Acinetobacter baumannii ATCC 17978]
 gi|213055146|gb|ACJ40048.1| ggdef domain/eal domain protein [Acinetobacter baumannii AB0057]
 gi|213988225|gb|ACJ58524.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|332730155|gb|EGJ61482.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332734785|gb|EGJ65879.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
          Length = 684

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 100/197 (50%), Gaps = 10/197 (5%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------S 124
           LV+++  I  +L         EL  +   ++ LS  D L+ L N    +           
Sbjct: 225 LVLVASFIVAVLEQRLNQRNLELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSDHR 284

Query: 125 Y-NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
           Y ++K++ ++ D+D FK +ND FGH +GD+++  ++++L         + R+GG+EF   
Sbjct: 285 YKDQKIAFLYIDLDRFKSVNDAFGHHIGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLI 344

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQ 242
           A  +  +EA  LA  +  +I++S     SG  I+I+ S GIA    H + +  ++  AD 
Sbjct: 345 AENTDTEEAMQLAEKVLHLIQDS--YQISGKEINISASLGIALFPEHGQNVQDLLMNADA 402

Query: 243 ALYVAKKSGRNRVVCFS 259
           A+ ++K+ GRN    FS
Sbjct: 403 AMLMSKEQGRNTYTVFS 419


>gi|149376889|ref|ZP_01894644.1| GGDEF family protein [Marinobacter algicola DG893]
 gi|149358781|gb|EDM47250.1| GGDEF family protein [Marinobacter algicola DG893]
          Length = 356

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/196 (31%), Positives = 94/196 (47%), Gaps = 14/196 (7%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           +   +  S+ ++ L   I   ++  L +    +++L+  D L+G LN S     L     
Sbjct: 145 DFWRITFSLGLTCLFVMIFAWLVGRLQV---ELTRLATTDPLTGCLNRSQLADILNGQIQ 201

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
               Y    S++  D+DYFK IND +GH  GDKV+  L+ ++         + R+GGEEF
Sbjct: 202 MRERYERVSSLILLDLDYFKMINDRWGHLAGDKVLQELTQRIGRRLRESDRLFRIGGEEF 261

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                 + +++A  +A +L   I            I IT SA +AE    E  S  + RA
Sbjct: 262 MLVLPETRQKDADKVARELLTSISARPFV----EGIQITASASVAEVGKGETWSVWLNRA 317

Query: 241 DQALYVAKKSGRNRVV 256
           DQALY AK  GRN+V+
Sbjct: 318 DQALYEAKARGRNQVI 333


>gi|332716296|ref|YP_004443762.1| diguanylate cyclase [Agrobacterium sp. H13-3]
 gi|325062981|gb|ADY66671.1| diguanylate cyclase [Agrobacterium sp. H13-3]
          Length = 644

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 88/207 (42%), Gaps = 19/207 (9%)

Query: 69  LSLVIISITISLLLGYISGSI------LK----ELFISYNRISQLSRIDCLSGLLNHSAF 118
           ++LVI+ +  + LL     S+      L+    EL     R+   +  D L+GL N S F
Sbjct: 181 IALVILLLRQNDLLNRAQKSMRGLTDDLRAATLELQAKNVRLEHDAYHDALTGLPNRSLF 240

Query: 119 ISSL-GSYNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L              +I+  D+D FK +ND  GH  GD ++  ++ +L  + G    
Sbjct: 241 RQELIERLRRSFGGNGTTAILLLDLDGFKDVNDTLGHDSGDALLQAVAQRLSGIGGDYDM 300

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
           V RLGG+EFA  +   +E  A  LA+ L + I  +         + I    GIA      
Sbjct: 301 VCRLGGDEFAVVSDDLNEDTARRLASKLIEQISRT--YQLGEQEVKIGTCIGIAISHGTV 358

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCF 258
               +  RAD ALY AK  G  R   F
Sbjct: 359 DADELFKRADLALYEAKAIGPGRASVF 385


>gi|313682434|ref|YP_004060172.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313155294|gb|ADR33972.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 324

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 77/165 (46%), Gaps = 11/165 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGD 152
           + +++  D L+ + N   F     ++        +KL ++ FDID FK IND FGH VGD
Sbjct: 161 LLKMATTDTLTEIGNRRLFEEIFQAHQALGEQYTDKLFLLLFDIDNFKGINDTFGHNVGD 220

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  LS  +           R GGEEFA     S       +A  +R++I+ +      
Sbjct: 221 SVLKELSALVSRSIRKSDIFVRWGGEEFAILLRYSDPSTVVKIAEQIRQLIDKNSFETI- 279

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +H+T S G+      E +     RAD+ALY AKK G+N V  
Sbjct: 280 ---VHVTCSFGLTSIQPAETLEQAFERADKALYRAKKDGKNCVRI 321


>gi|291286463|ref|YP_003503279.1| diguanylate cyclase with PAS/PAC sensor [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290883623|gb|ADD67323.1| diguanylate cyclase with PAS/PAC sensor [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 565

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 11/186 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           +    + E       I  L+  D L+GL N       +          N K ++++ D+D
Sbjct: 378 VVLRDITEKKKQDKYIRYLAMHDRLTGLPNRELLTDRISKGTARQKRGNLKNAVIYIDLD 437

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA 196
            FK IND  GH  GD+ +  ++ +L         V R+GG+EFA    G + ++E + +A
Sbjct: 438 GFKPINDTLGHDAGDEALREIAVRLDKSVRGSDTVSRIGGDEFAVFLEGVAGKKEISRVA 497

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
           + +   + N  I+I+     H+  S GI+        +  +I  AD+A+Y  K++G+NR 
Sbjct: 498 DRILDSL-NKPISIND-HLFHVGASMGISIYPDDTVNLGELITFADKAMYYVKETGKNRY 555

Query: 256 VCFSDI 261
             +SD+
Sbjct: 556 TYYSDV 561


>gi|153001535|ref|YP_001367216.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|151366153|gb|ABS09153.1| diguanylate cyclase [Shewanella baltica OS185]
          Length = 579

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 109/244 (44%), Gaps = 26/244 (10%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGL-----EYILVENLSLVIIS---------ITISLL 81
           + FI  +     ++ F+I LT ++ +     + ++    ++  I+         +T +L 
Sbjct: 325 TAFIILIFCSGILYCFFIWLTSWHFITKGIIKPVMATRDAMNAIANEKLDTHMPVTDNLE 384

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFF 134
           L  +  S+   L     ++  ++  D L+G  N                 ++  L I+ F
Sbjct: 385 LQQMVNSLET-LKSYAAQVKGMAETDGLTGCYNRRYLDIQLQKELEYARDHHMPLGIILF 443

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           DID FKQ ND +GH  GD+ +  + +    +       + R GGEEF      S  +E  
Sbjct: 444 DIDNFKQFNDRYGHVAGDQCLKNIVNAAKSILKRPTDMLARYGGEEFMIVLPSSHLEEVY 503

Query: 194 ILANDLRKIIENSQINISSGPSIHI-TISAGIA--ERCHKEPISTIIYRADQALYVAKKS 250
             A  LR+ I + +I     P   I TISAGI   +   +   +++I RAD+ALY AK +
Sbjct: 504 QFAERLREKIISLEIPHEDSPHAGILTISAGITCWQLPQQLDANSLINRADEALYHAKLT 563

Query: 251 GRNR 254
           GRNR
Sbjct: 564 GRNR 567


>gi|50119607|ref|YP_048774.1| putative signaling membrane protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610133|emb|CAG73573.1| putative signaling membrane protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 489

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 118/242 (48%), Gaps = 20/242 (8%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
           F I   +   T + +  +++  +G+      E  +   L+   ++I + L++  +S S  
Sbjct: 247 FPIMSLLCAITGVILNYLYINQVGILIDSNSEAYINSFLTTARLNIAM-LIMAMLSVS-- 303

Query: 91  KELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDID 137
              F+S NR     I   S  D L+   N  AF+S L             +++++F DID
Sbjct: 304 --HFVSMNRRLIKIIESNSLKDALTNTFNRRAFLSMLNVRQGVLMNKRKRQITLLFLDID 361

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           YFKQ+ND +GH  GD++IA  +  L         + R GGEEF  AA   +++++  +A 
Sbjct: 362 YFKQVNDTYGHACGDELIASFARMLSANIRPSDILCRWGGEEFIIAAYDLTDEQSEAMAE 421

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRV 255
            LR++ E++ + +S G  I+ T+S G+A         I  +I  AD+ LY AK  GRN V
Sbjct: 422 ALRRLTESTPLMLSDGREIYFTVSIGVAIFSQYEGGNIYDLIGLADEQLYKAKAQGRNCV 481

Query: 256 VC 257
             
Sbjct: 482 CM 483


>gi|33597102|ref|NP_884745.1| hypothetical protein BPP2514 [Bordetella parapertussis 12822]
 gi|33566553|emb|CAE37809.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 475

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 75/159 (47%), Gaps = 7/159 (4%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+ LLN           ++        LS++  DIDYFK IND  GH  GD V+  +
Sbjct: 296 RDTLTRLLNRKYLHVVLSKEVAYARKTGVPLSVLVADIDYFKSINDAHGHDAGDFVLQQV 355

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  +        +  RLGGEEF    + +   +A  +A  LR+ I+     +  G  + +
Sbjct: 356 ASLIASYSRGGDYTFRLGGEEFLVVLVDADGTQALNVAEALRRRIQEKATVLPDGGEVRL 415

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           T+S G+A          ++ RADQALY AK  GRNR V 
Sbjct: 416 TLSIGVAAHDRHPDYQRLLKRADQALYAAKPGGRNRCVL 454


>gi|327485915|gb|AEA80321.1| sensory box/GGDEF family protein [Vibrio cholerae LMA3894-4]
          Length = 308

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 11/180 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            + + ++     ++ QL+  D L+ L N            +      + LS +  DID F
Sbjct: 127 STDITDIVELREQLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNF 186

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND FGH  GD+V+ FL+     V     F GR+GGEEF      +  + A  LA  +
Sbjct: 187 KLINDQFGHDKGDEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQI 246

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           R+          +    HI + AG++   H +  I+ I  R+DQALY AK++GRNR   +
Sbjct: 247 RQRFAEHPFFEQNE---HIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 303


>gi|293605320|ref|ZP_06687705.1| diguanylate cyclase [Achromobacter piechaudii ATCC 43553]
 gi|292816259|gb|EFF75355.1| diguanylate cyclase [Achromobacter piechaudii ATCC 43553]
          Length = 382

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 117/257 (45%), Gaps = 16/257 (6%)

Query: 9   LSIW-LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE 67
           L+ W +   + L++ +P  F++  +   ++F A    +         L   YG    L  
Sbjct: 133 LTAWEMWRCEPLKALAPRRFVVAITGIHALFYAFRALLLP------WLVSLYGASAQLAA 186

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------S 121
           +   +   +  S+LL      +++E   ++ ++ + S+ D L+ L N   F         
Sbjct: 187 SNITMYEGVLYSVLLPMALLKLVRE--EAHGQLVRESQTDYLTRLGNRRWFFEEGARLLR 244

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                  ++++ FD+D+FK IND  GH  GD+V+   +D    V G  + + R+GGEEFA
Sbjct: 245 AHGAQGPVAVLAFDLDHFKSINDRHGHQTGDQVLKVFADIAQEVAGPNVLLARIGGEEFA 304

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRA 240
           A  +G + ++A  L   + +    +    +    I  T+S G+A       P++  +  A
Sbjct: 305 ALLMGDAARQAQSLGESVARRFAGTASERADRSEIRATVSIGLARFDDNAPPLADSLAAA 364

Query: 241 DQALYVAKKSGRNRVVC 257
           D+ALY AK  G NR+  
Sbjct: 365 DRALYRAKSLGGNRLEV 381


>gi|213619031|ref|ZP_03372857.1| hypothetical protein SentesTyp_22220 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 428

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 115/273 (42%), Gaps = 21/273 (7%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIA--------NIFLFYIGLTPFYGL 61
           ++WL      E           ++   I IA + +          N  + + G+   +  
Sbjct: 156 ALWLTFRLRNEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLA 215

Query: 62  EYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF 118
             + V  L+++ I++ +SL    +      +   L  +   ++QL+  D L+ L N    
Sbjct: 216 VLVSVVALTILGITLLVSLFDARLQARTALLASSLAQANQELAQLALHDTLTRLPNRVLL 275

Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L          +   +++F D+D FK +ND +GH +GDK++  ++ +L         
Sbjct: 276 EDRLEQAISKANRESTSFALLFMDLDGFKAVNDAYGHDIGDKLLVAVTHRLNQPLSGQFT 335

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF   A  S+  EAA LA+ L   I+           + +T+S GIA      
Sbjct: 336 LARIGGDEFVLLAEVSAPDEAASLASALVHSIDA--PFTIDPYELVVTLSVGIALYPLDG 393

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +    +++ AD A+Y  K +GRN    F    N
Sbjct: 394 KNERELMFNADAAMYHTKHTGRNGYHFFQPSMN 426


>gi|209809223|ref|YP_002264761.1| putative GGDEF protein [Aliivibrio salmonicida LFI1238]
 gi|208010785|emb|CAQ81180.1| putative GGDEF protein [Aliivibrio salmonicida LFI1238]
          Length = 413

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 79/175 (45%), Gaps = 7/175 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-----SIVFFDIDYFKQIN 143
            + E +    +I   ++ D L+GLLN  A    L    E+      + +  DID FK IN
Sbjct: 235 DVTEKYHLERKIEFQAKHDDLTGLLNRRAITEFLLKEQEEHLRPSQTCLLIDIDNFKLIN 294

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGH  GD VI   ++           +GR GGEEF       + ++A  +A  +R   
Sbjct: 295 DQFGHSAGDSVIQQFAELCSTFVKDNGVIGRWGGEEFIIFFPQLNVEQANNIAEKIRYAC 354

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           E     I +     IT+S GI+        I  ++  AD  +Y AK+ G+N++V 
Sbjct: 355 EEVHF-IFNDIQHSITVSIGISTCLSTSCSIEALVQNADNNMYQAKQQGKNQIVL 408


>gi|153826505|ref|ZP_01979172.1| GGDEF domain protein [Vibrio cholerae MZO-2]
 gi|149739685|gb|EDM53892.1| GGDEF domain protein [Vibrio cholerae MZO-2]
 gi|327483458|gb|AEA77865.1| C-di-GMP phosphodiesterase A-like protein [Vibrio cholerae
           LMA3894-4]
          Length = 685

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 10/190 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           L     S+ K   ++ ++++QL+  D L+GL N S  +  L        + +    + + 
Sbjct: 220 LASTFQSMWKGKELAESKLNQLAYYDSLTGLANRSLLLQKLSDAIETAQNSHSTGVLFYL 279

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND+ GH +GD++I  ++ ++           R+GG+EFA      S  +A  
Sbjct: 280 DLDRFKTINDSLGHTIGDQLIKAVALRMEAWTKNDYLSARIGGDEFAVLIPYLSPVKAEE 339

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRN 253
           +A  L  +I N           + T+S GI+           ++ +AD ALY AK SGRN
Sbjct: 340 VAKQLLTLISN--PYAVDDHQFYCTVSIGISVFPSVGSSNIDVLRQADTALYRAKASGRN 397

Query: 254 RVVCFSDIEN 263
           + + +     
Sbjct: 398 KFMFYEPEMQ 407


>gi|15891442|ref|NP_357114.1| GGDEF family protein [Agrobacterium tumefaciens str. C58]
 gi|15159848|gb|AAK89899.1| GGDEF family protein [Agrobacterium tumefaciens str. C58]
          Length = 644

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 86/207 (41%), Gaps = 19/207 (9%)

Query: 69  LSLVIISITISLLLGYISGSI------LK----ELFISYNRISQLSRIDCLSGLLNHSAF 118
           ++LVI+ +  + LL     S+      L+    EL     R+   +  D L+GL N S F
Sbjct: 181 IALVILLLRQNDLLNRAQKSMRGLTDDLRAATLELQAKNVRLEHDAYHDALTGLPNRSLF 240

Query: 119 ISSL-GSYNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
              L              +I+  D+D FK +ND  GH  GD ++  ++ +L  + G    
Sbjct: 241 RQELIERLRRSFGGTGTTAILLLDLDGFKDVNDTLGHDAGDALLQAVAQRLSAIGGDYDM 300

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
           V RLGG+EFA  +   +E  A  L+  L   I  +         + I    GIA      
Sbjct: 301 VCRLGGDEFAVVSDDLNEDAARRLSTKLIDQISRT--YQLGEQEVKIGTCIGIAISHGAV 358

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCF 258
               +  RAD ALY AK  G  R   F
Sbjct: 359 DADELFKRADLALYEAKAIGPGRASVF 385


>gi|62180267|ref|YP_216684.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62127900|gb|AAX65603.1| putative PAS/PAC domain; diguanylate cyclase/phosphodiesterase
           domain 1; Diguanylate cyclase/phosphodiesterase domain 2
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
          Length = 660

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSDSLIRTADTAMYNAKEGGRGQFC 390

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 391 VFSPEMNQ 398


>gi|329903745|ref|ZP_08273606.1| hypothetical protein IMCC9480_1608 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548225|gb|EGF32925.1| hypothetical protein IMCC9480_1608 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 527

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 87/188 (46%), Gaps = 8/188 (4%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEK 128
           + ++   G  +   + +L      +S+L R D L+G LN                     
Sbjct: 338 MIVARQAGEAAEQRIHDLESKLAAMSELVREDQLTGSLNRRGLDDVFDRELARADRRKSP 397

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L I   D+D FK++ND  GH  GD+ + +L   +     T   + R GGEEF      ++
Sbjct: 398 LCIAMLDLDDFKRLNDTHGHVAGDEALVYLVRVIKDTLRTMDVLARFGGEEFLILLPDTT 457

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
             +A      L++ +   +I + +   I IT SAG+A R   E    ++ RAD ALY AK
Sbjct: 458 MDDATQTVTRLQREL-TKRIFMHNNERILITFSAGVALRKGNEDQVGMLKRADTALYQAK 516

Query: 249 KSGRNRVV 256
           ++G+NRVV
Sbjct: 517 RAGKNRVV 524


>gi|288941124|ref|YP_003443364.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
 gi|288896496|gb|ADC62332.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
          Length = 437

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 85/180 (47%), Gaps = 9/180 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142
           L+ L    +   + + +D L+ L N  AF   L           +   ++  D D+FK++
Sbjct: 258 LQSLRGELDAAQRENDLDGLTRLYNRKAFDRQLERVFELCKLSGQSACLLMIDADHFKRV 317

Query: 143 NDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GHP GD V+  L++           FV R GGEEFAA    +S + A  LA  L  
Sbjct: 318 NDEYGHPAGDTVLKRLANCCTKGFPRKSDFVARYGGEEFAAILQDTSLKSALPLAQRLLD 377

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            I   +I    G  + IT+S GIAE          +  AD ALY AKK GR+R+V   ++
Sbjct: 378 TIRIMRIEH-EGLELDITVSIGIAELGTLASAEHWLKMADGALYAAKKGGRDRIVTAPEM 436


>gi|226357436|ref|YP_002787175.1| diguanylate cyclase domain protein; membrane protein [Deinococcus
           deserti VCD115]
 gi|226319426|gb|ACO47421.1| putative diguanylate cyclase domain protein; putative membrane
           protein [Deinococcus deserti VCD115]
          Length = 373

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 109/226 (48%), Gaps = 19/226 (8%)

Query: 38  FIATVIFIANIFLFY-IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK-ELFI 95
           F+A +I I+ I+     G +  + L  ++  NL+    ++T  +L G +     + E  +
Sbjct: 143 FMALMIMISVIYAAASWGTSDLHVLNALVQLNLA----NLTCLMLAGVVVRLTARHEATV 198

Query: 96  SYNR-ISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDN 145
            + R   QL+  D L+GL N   F   L S           + LS++F D+D FKQ+ND 
Sbjct: 199 VHARTFEQLAYTDALTGLPNRRYFEQELDSALAAAGEVTPPQPLSVIFMDLDGFKQVNDT 258

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH VGD+V+  ++++L   F     + RL G+EFAA    ++ +    + + + + +  
Sbjct: 259 YGHDVGDQVLKVVAERLRSTFRGGELIVRLSGDEFAALIPTATPEGMQAIRSRVAEAL-- 316

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
            +     G  +HI  S G +    H   + T+++ AD A+Y  K  
Sbjct: 317 GKPIALGGQELHIAASLGFSVFPEHGTDVRTLLHHADTAMYGMKSH 362


>gi|205356975|ref|ZP_03223632.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205325110|gb|EDZ12949.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 663

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSESLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 394 VFSPEMNQ 401


>gi|168704869|ref|ZP_02737146.1| FHA domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 294

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 10/169 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149
           +  I +L+ +D L+ + N       L         +   LS++  DID FK IND+ GH 
Sbjct: 126 HEEIYRLTILDGLTQIHNKRYLDEFLEREVVRSQRHRRPLSVLALDIDKFKTINDSMGHL 185

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD ++  L+  +           R GGEEF    + +++ +A  +A  LR+ +   +  
Sbjct: 186 CGDFLLRELAGVVRESVRQEDLFARAGGEEFVVVLVETTKDDALHVAERLREAVAAHEFR 245

Query: 210 ISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256
             + P I +TIS G+A     E      +   ADQ LY AK++GRNRV 
Sbjct: 246 FEATP-IKMTISIGLASTVGDEVTTPHHLRQDADQKLYEAKRTGRNRVC 293


>gi|134101017|ref|YP_001106678.1| hypothetical protein SACE_4484 [Saccharopolyspora erythraea NRRL
           2338]
 gi|291009425|ref|ZP_06567398.1| hypothetical protein SeryN2_33310 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133913640|emb|CAM03753.1| hypothetical protein, contains GGDEF domain [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 474

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 108/256 (42%), Gaps = 23/256 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE 67
           FL   L   +     +P T +++      +  A V           G  P  G  Y L+ 
Sbjct: 234 FLGAALAPNRQFSQMTPRTPLLFLPY---VPFAAVCVFTVFTTATTG-DPDVGEVYALIA 289

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE 127
            ++LV++   I+L          ++L ++  +++  +  D L+G  N +  +  L     
Sbjct: 290 VVALVVLRQVITL----------RQLSVARRQLAHQATHDPLTGASNRNLLLFRLDKALS 339

Query: 128 K------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
           +      L +++ D+D+FKQIND  GH  GD V+  ++ +L         + R+GG+EF 
Sbjct: 340 RAWPPRSLGLLYADLDHFKQINDVLGHEAGDAVLCAVAARLNARIRPTDTLARMGGDEFV 399

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                 + ++       ++   +   + +   P + ++ S G       +     + RAD
Sbjct: 400 ILL-DPAPEDPGDFGRRIQSAFDE-PVFVCGAPRV-VSASLGYVGLDDHDSPDQALARAD 456

Query: 242 QALYVAKKSGRNRVVC 257
           +A+Y AK +GR+ +  
Sbjct: 457 EAMYQAKAAGRHGIRI 472


>gi|310644541|ref|YP_003949300.1| diguanylate cyclase (ggdef) domain protein [Paenibacillus polymyxa
           SC2]
 gi|309249492|gb|ADO59059.1| Diguanylate cyclase (GGDEF) domain protein [Paenibacillus polymyxa
           SC2]
          Length = 358

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 11/198 (5%)

Query: 68  NLSLVIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           NL  +I+  T+ +L G   Y   S +K+   + + + + +  D L+GL +  AF +    
Sbjct: 157 NLETIIMITTVKILGGLFTYFMMSHIKKTERAIHLLEEAANRDHLTGLYSPRAFDALFEE 216

Query: 125 -------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                    +   +V  DID+FK+IND +GH  GD V++ L   L     T  +  R GG
Sbjct: 217 VLHASKTTKKPFGLVMLDIDHFKKINDTYGHLNGDAVLSQLGILLNRESTTRAYPSRKGG 276

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EEFA        ++AA  A  +RK +EN    ++ G  I +T+S G A          ++
Sbjct: 277 EEFAILLGDCDTEKAASFAEKIRKAVENECFLLNDGTIISLTVSIG-AGSSPAIVSRRLL 335

Query: 238 YRADQALYVAKKSGRNRV 255
            +AD+ALY AK+SGRNRV
Sbjct: 336 EKADEALYEAKRSGRNRV 353


>gi|288923877|ref|ZP_06417958.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EUN1f]
 gi|288344770|gb|EFC79218.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EUN1f]
          Length = 825

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 11/169 (6%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDK 153
             LS  D L+GL N +A +  L     + +       ++F D+D FK IND  GH  GD+
Sbjct: 384 RYLSLHDPLTGLPNRAALLDHLSRSLRRAARDGRHTGVLFIDLDGFKAINDTLGHKCGDE 443

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISS 212
           ++  ++ +L         VGRL G+EFA          E   +   +        I +  
Sbjct: 444 LLRVVASRLRDAVRPGDVVGRLAGDEFAVLCDDIGDLDELRAIGERVIATALTPPIELI- 502

Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              + ++ S G+A           ++  AD A+Y AK+ G   VV + D
Sbjct: 503 -RPVGVSGSVGLARSGPDLTDAEDLLNAADMAMYEAKRRGPGHVVAYDD 550


>gi|260459132|ref|ZP_05807387.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075]
 gi|259034686|gb|EEW35942.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075]
          Length = 383

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 69/262 (26%), Positives = 114/262 (43%), Gaps = 12/262 (4%)

Query: 5   LKDFLSIWLCHEKNLESFSPH----TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60
            ++  +  L      E +          I  +  +S    + +  A + L + G      
Sbjct: 121 FENLFAALLLFATAFEYWRGRDEAPALTIGITALYSATATSFVLCAMV-LAWDGRLVLGH 179

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
                 E LSL+++  +++  +G +S ++ +     ++R  + +  D L+GLLN  A   
Sbjct: 180 APSNWAEELSLIVVIASMTG-IGALSLALNQGRLARHHR--RNALTDPLTGLLNRRALFD 236

Query: 121 SLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
             G+       ++V FD+D FK IND FGH  GD+V+   + +L           R+GGE
Sbjct: 237 MHGNAPVGAFTAVVVFDLDNFKTINDEFGHAAGDEVLRVFASELAGNLRQTDVAARMGGE 296

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTII 237
           EFA     +  +     A  +R      +I    G S+  T+SAG A           ++
Sbjct: 297 EFALVLKRTLPETVEAAAERIRTAFAARRIETEMG-SLTCTVSAGFAFGAKDGPSFDKVL 355

Query: 238 YRADQALYVAKKSGRNRVVCFS 259
             AD+ALY AK+ GRNRVV  S
Sbjct: 356 SAADKALYDAKRGGRNRVVIAS 377


>gi|207856783|ref|YP_002243434.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|206708586|emb|CAR32907.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 660

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSDSLIRTADTAMYNAKEGGRGQFC 390

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 391 VFSPEMNQ 398


>gi|163734071|ref|ZP_02141512.1| GGDEF/EAL domain protein [Roseobacter litoralis Och 149]
 gi|161392607|gb|EDQ16935.1| GGDEF/EAL domain protein [Roseobacter litoralis Och 149]
          Length = 619

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/190 (27%), Positives = 89/190 (46%), Gaps = 18/190 (9%)

Query: 90  LKELFISYNRISQLS-------RIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFD 135
           ++ L     R+ QL+         D L+GL N   F       I +L  +  + ++++ D
Sbjct: 152 VQRLEKENTRLLQLAKSVAKDANEDALTGLSNRRHFEIELKTWIENLKKHGTEFAVIYID 211

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D FK +ND  GH  GD+++  ++D L  + G    V RLGG+EF         Q A  +
Sbjct: 212 LDRFKFVNDTLGHEAGDRLLVSVADMLRDLTGESDLVARLGGDEFIILRP--LAQSALNI 269

Query: 196 ANDLRKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           ++   +I+   Q   +  G S   + S G+A    + E    ++  AD+ALY AK  G+ 
Sbjct: 270 SSLADEIVGTMQAPFACDGKSTACSASVGVAIANKYMEHAEQVVADADEALYHAKSQGKG 329

Query: 254 RVVCFSDIEN 263
           R   F++  +
Sbjct: 330 RWSFFTEEMH 339


>gi|146306873|ref|YP_001187338.1| diguanylate cyclase [Pseudomonas mendocina ymp]
 gi|145575074|gb|ABP84606.1| diguanylate cyclase [Pseudomonas mendocina ymp]
          Length = 308

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 8/158 (5%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  D L+   N  A    L           + LS++  DID+FK IND+ GH +GD+V+ 
Sbjct: 147 ALRDPLTDTGNRIAMDQVLQREVDLARRNLQPLSLLMLDIDHFKVINDSHGHALGDEVLK 206

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++  L         V R GGEEF     G++ + AA++   LR  +   Q  + +G  I
Sbjct: 207 AVAQTLKNQLRNIDMVFRYGGEEFLVILSGTNREGAALVGERLRFAVLELQC-LDAGRPI 265

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            ++IS G A     E   +++ RAD ALYVAK+ GRNR
Sbjct: 266 EVSISLGCASLLPGESGESLLRRADSALYVAKREGRNR 303


>gi|71282285|ref|YP_271060.1| GAF domain/GGDEF domain/EAL domain-containing protein [Colwellia
           psychrerythraea 34H]
 gi|71148025|gb|AAZ28498.1| GAF domain/GGDEF domain/EAL domain protein [Colwellia
           psychrerythraea 34H]
          Length = 831

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 78/185 (42%), Gaps = 12/185 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--------KLSIVFFDIDYFKQ 141
           +     +   +   +  D L+GL N   F+  L               +++F D+D FK 
Sbjct: 383 ITHRKQAEKLLKHTAAHDSLTGLPNRMVFLDLLNHAIACAKRKDDFSFAVLFLDLDRFKV 442

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           +ND+ GH  GD ++  ++ +L+ +      V RLGG+EF        S  EA  +A  + 
Sbjct: 443 VNDSLGHHAGDVLLKIIARELLAIVRKVDTVARLGGDEFVILIEDLKSNNEAFEVAQRIT 502

Query: 201 KIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++  Q        ++   S GI+          T++  AD A+Y AK +GR R   F 
Sbjct: 503 AFLQ--QPFTIDNQLVYTGTSIGISFSNIRYTDADTMLRDADTAMYHAKDNGRGRYEVFD 560

Query: 260 DIENN 264
           D  + 
Sbjct: 561 DSMHQ 565


>gi|300716021|ref|YP_003740824.1| conserved uncharacterized protein [Erwinia billingiae Eb661]
 gi|299061857|emb|CAX58973.1| conserved uncharacterized protein [Erwinia billingiae Eb661]
          Length = 520

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 13/182 (7%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
             + ++L      +  L+ +D L+GL N   F       +       + L+++  D+D F
Sbjct: 330 AQVREQLTSMNRTLQTLALVDSLTGLANRRQFDLYLDRAMERANKLRKPLALLMIDVDSF 389

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           K  ND +GH  GD  +  + D L+ V   +   + R GGEEFA        + A   A  
Sbjct: 390 KNFNDTYGHLSGDDCLKRVGDALLQVSHRSDDMIARYGGEEFAVILPDCEGEGALRFARS 449

Query: 199 LRKIIENSQINISSGPSIH--ITISAGIAERCHK---EPISTIIYRADQALYVAKKSGRN 253
             + +    I   +       +TIS G+              +I +AD+ALY AK SG+N
Sbjct: 450 ALESVAAMAIPHQNSQHAAKIVTISIGVHVMQGGLPENSRHALIGQADKALYQAKMSGKN 509

Query: 254 RV 255
           RV
Sbjct: 510 RV 511


>gi|218459249|ref|ZP_03499340.1| putative sensory box/GGDEF family protein [Rhizobium etli Kim 5]
          Length = 298

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 12/206 (5%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           +  +   + +N  ++ I+  I+ L     G  +++     ++  + S  D L+G+ N   
Sbjct: 98  WLWMTETVQQNGWMLCIASDITRLRA--QGRTVRQ---DRDQAIKASYTDELTGVANRRF 152

Query: 118 FISS------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
            ++                +  FDID FK+IND  GH  GD V+   + ++         
Sbjct: 153 VMARVDDMLAAARTGGSGCLAVFDIDNFKRINDRLGHHAGDLVLRDFAHRIHQNVRRNDC 212

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
            GR+GGEEF      +  ++A  +   +  +I  S+  ++  P    T SAGIA     +
Sbjct: 213 FGRVGGEEFLLVMPSTDPEDALAIVERMLTVIRFSR-PLADSPDFSYTCSAGIAASLPTD 271

Query: 232 PISTIIYRADQALYVAKKSGRNRVVC 257
             S +  RADQALY AK SGR+RV  
Sbjct: 272 TASELYRRADQALYDAKLSGRDRVRA 297


>gi|161613817|ref|YP_001587782.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161363181|gb|ABX66949.1| hypothetical protein SPAB_01551 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 663

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSESLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 394 VFSPEMNQ 401


>gi|284988698|ref|YP_003407252.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Geodermatophilus obscurus DSM 43160]
 gi|284061943|gb|ADB72881.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geodermatophilus obscurus DSM 43160]
          Length = 697

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/180 (28%), Positives = 87/180 (48%), Gaps = 7/180 (3%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFK 140
           ++ + + E       ++  +  D L+GL N +  +  +G   E      +++F D+D FK
Sbjct: 240 VTHTDITERVRDQQALAWQASHDDLTGLPNRARLLELIGEALEPGRGPAALLFLDLDGFK 299

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND+ GH VGD+++  +  +L         VGRLG ++F   A      EAA LA  L+
Sbjct: 300 TVNDSLGHHVGDELLRRVGGRLAEQVRPGDAVGRLGADQFLVLARDCDTAEAASLAFRLQ 359

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
                S+   + G S+ ++ S G+A           ++  AD A + AK +GR+RV  FS
Sbjct: 360 SSF--SRPFHAEGISVPLSASIGVAVAQPGADRAHQLLSDADTAAFAAKGAGRDRVHVFS 417


>gi|254501927|ref|ZP_05114078.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222437998|gb|EEE44677.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 759

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 100/219 (45%), Gaps = 20/219 (9%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           + PF G+   ++   + V+I++T        +  + K L +S  +    SR D LSGL N
Sbjct: 278 INPFLGMAAFMI---TAVVIAVTA------FTRHMTKRLAVSEAQAVHTSRHDALSGLPN 328

Query: 115 HSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
            + F   L        S   + ++++ D+D+FK IND  GH  GD VI  +  +L  V G
Sbjct: 329 RAHFHRLLTDMLQDTNSRGRETAVIYIDLDHFKDINDTLGHSAGDMVIVAVGKRLTHVLG 388

Query: 168 TPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
               V R+ G+EFA     S   E    + + ++  I  SQ        +H ++S G + 
Sbjct: 389 DNGIVARISGDEFAMVIPNSKSDEWLEYILDQIQDEI--SQPIKIGARELHASLSIGASV 446

Query: 227 RC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
                     ++ +AD ALY AK++GRNR   F     +
Sbjct: 447 APRDGIDPDELLRKADIALYDAKENGRNRRSFFEANMED 485


>gi|152996801|ref|YP_001341636.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
 gi|150837725|gb|ABR71701.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
          Length = 572

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 7/189 (3%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDID 137
           L+  I  SI +       ++  ++  D L+GL +    + +L       E  ++ F D+D
Sbjct: 123 LIRAIISSIHR--AELEKKLHDMAHYDNLTGLASRPLLLENLQQIIINKEAAAVAFLDLD 180

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILA 196
            FK +NDN+GH  GD V+  ++++L  +      + R+GG+EF       S   E     
Sbjct: 181 NFKPVNDNYGHDTGDYVLVTIANRLKQILRKSDTLARIGGDEFVLLLRDVSCRDECDGFL 240

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
           N L +++            + ++ S G+A   +      TI+ RADQ +Y AK  GRN +
Sbjct: 241 NRLIELVNTPIALTEFECQVQVSASIGVALVSNDSLEADTILRRADQTMYQAKNMGRNNI 300

Query: 256 VCFSDIENN 264
           + F   E  
Sbjct: 301 IFFDPEEER 309


>gi|115352441|ref|YP_774280.1| diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria AMMD]
 gi|115282429|gb|ABI87946.1| diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria AMMD]
          Length = 779

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 97/208 (46%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVIISITISLLLGYISGS--ILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +Y    N+ L++ S     +L + S +  ++ +L      ++QL+  D L+GL N  A +
Sbjct: 291 DYSHTRNVYLLMTSFITLAMLAFFSVATGLIGKLLGREREMTQLAEYDLLTGLANRYATL 350

Query: 120 SSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
             L       +   +L ++F D+D FK +ND  GH  GD V+   + +L    G    + 
Sbjct: 351 RGLRNDVSMPASLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTASRLSDAVGDEGSLA 410

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EF     G   E+ A  LA  + ++    +     G S  +  S GIA      E
Sbjct: 411 RIGGDEFVVVMKGDDIERRAVRLAEAIIRMF--GEPFDVRGSSFVLHASIGIALHSVANE 468

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +AD A+Y AK +G+N    ++
Sbjct: 469 SEIDLLKKADLAMYSAKDAGKNCYQFYA 496


>gi|150397885|ref|YP_001328352.1| diguanylate cyclase [Sinorhizobium medicae WSM419]
 gi|150029400|gb|ABR61517.1| diguanylate cyclase [Sinorhizobium medicae WSM419]
          Length = 316

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 16/225 (7%)

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ------- 102
           L   G  PF  +E  L +   L++              S + ++     ++ Q       
Sbjct: 79  LHRRGKVPFRTVETDLHDGRWLLMTETVDQKGWMLCIASGITDVRAGERKLRQDRDFALR 138

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHPVGDKV 154
            S++D L+ L N    +  L  + +  +        +   DIDYFK IND FGH  GD+V
Sbjct: 139 ASQVDDLTSLPNRRYTMERLKEFIQNCAENPHMWGCVAIIDIDYFKAINDRFGHYRGDEV 198

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +   + Q+          GR+GGEEF      ++  EA ++ + L   I +++  +S+ P
Sbjct: 199 LLDFARQMQEFVRRSDCFGRIGGEEFMLILPDTTVSEANLILDRLLDKIRSAR-PLSNIP 257

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               T S G+AE    + +  I  RAD ALY+AK+ GR+RV  F+
Sbjct: 258 EFFYTCSVGLAEYREGDSVGDIYSRADAALYIAKREGRDRVSRFT 302


>gi|262190581|ref|ZP_06048821.1| sensory box/GGDEF family protein [Vibrio cholerae CT 5369-93]
 gi|262033541|gb|EEY52039.1| sensory box/GGDEF family protein [Vibrio cholerae CT 5369-93]
          Length = 308

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 11/180 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            + + ++     ++ QL+  D L+ L N            +      + LS +  DID F
Sbjct: 127 STDITDIVELREQLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNF 186

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND FGH  GD+V+ FL+     V     F GR+GGEEF      +  + A  LA  +
Sbjct: 187 KLINDQFGHDKGDEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQI 246

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           R+          +    HI + AG++   H +  I+ I  R+DQALY AK++GRNR   +
Sbjct: 247 RQRFAEHPFFEQNE---HIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 303


>gi|310765223|gb|ADP10173.1| HmsT (Hemin storage system protein) [Erwinia sp. Ejp617]
          Length = 365

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 90/186 (48%), Gaps = 7/186 (3%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFK 140
            +  ++++L+        LS +D L+GL N     + L    +K +    ++  DID+FK
Sbjct: 172 FTRRLVRQLYEEKETYCDLSMLDPLTGLYNRRGLKNRLADILDKHTGNHYVLLLDIDHFK 231

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
             NDN+GH +GD+ +  +S  +     +   V R GGEEF      ++E  A   A  +R
Sbjct: 232 AYNDNYGHAMGDQALTRVSVAIRDAVRSRDIVTRYGGEEFLVLLTNATESMAIKQAERIR 291

Query: 201 KIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + +   +I       +  H+TIS G+A     +     +  AD+ALY+AK  GRNRV+  
Sbjct: 292 EFVLGLEIPHRFNNQVATHVTISVGVAPLM-ADDFDKALAHADRALYLAKSRGRNRVIHL 350

Query: 259 SDIENN 264
            D  N 
Sbjct: 351 QDALNR 356


>gi|332874050|ref|ZP_08441985.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6014059]
 gi|322506769|gb|ADX02223.1| EAL domain-containing protein [Acinetobacter baumannii 1656-2]
 gi|323516639|gb|ADX91020.1| EAL domain-containing protein [Acinetobacter baumannii TCDC-AB0715]
 gi|332737791|gb|EGJ68683.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6014059]
          Length = 684

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 100/197 (50%), Gaps = 10/197 (5%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------S 124
           LV+++  I  +L         EL  +   ++ LS  D L+ L N    +           
Sbjct: 225 LVLVASFIVAVLEQRLNQRNLELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSDHR 284

Query: 125 Y-NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
           Y ++K++ ++ D+D FK +ND FGH +GD+++  ++++L         + R+GG+EF   
Sbjct: 285 YKDQKIAFLYIDLDRFKSVNDAFGHHIGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLI 344

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQ 242
           A  +  +EA  LA  +  +I++S     SG  I+I+ S GIA    H + +  ++  AD 
Sbjct: 345 AENTDTEEAMQLAEKVLHLIQDS--YQISGKEINISASLGIALFPEHGQNVQDLLMNADA 402

Query: 243 ALYVAKKSGRNRVVCFS 259
           A+ ++K+ GRN    FS
Sbjct: 403 AMLMSKEQGRNTYTVFS 419


>gi|289642211|ref|ZP_06474361.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Frankia
           symbiont of Datisca glomerata]
 gi|289507945|gb|EFD28894.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Frankia
           symbiont of Datisca glomerata]
          Length = 935

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 24/184 (13%)

Query: 85  ISGSILKELFISYNR--ISQLSR---IDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           +S ++      ++ R    + +     D L+GL N    ++   +           +++V
Sbjct: 416 VSRALAHARLEAHARQVAEEQAHDAGHDWLTGLGNRRLLMARAAAEMRRQAETGRSVALV 475

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS---- 188
             D+D FK IND  GH  GD+V+  ++++L         V RLGG+EFA    G      
Sbjct: 476 MIDLDRFKIINDTLGHSAGDRVLQAVAERLRRGIRADDVVARLGGDEFAVLVTGIDDPAQ 535

Query: 189 -EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYV 246
            E  AA LA+ L + +      +  G  + +  S G+A        I  ++  AD A+Y 
Sbjct: 536 AEATAAELADVLCRDV------VMDGIPLAVEASLGVACHPQDGSTIEELLKHADIAMYQ 589

Query: 247 AKKS 250
           AK S
Sbjct: 590 AKHS 593


>gi|255028253|ref|ZP_05300204.1| hypothetical protein LmonL_01599 [Listeria monocytogenes LO28]
          Length = 352

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 106/232 (45%), Gaps = 11/232 (4%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           FS F+A +I      L+Y       G      E +   ++    +LL+ Y    I K   
Sbjct: 117 FSRFVALIILNFPAILYYFVNNFDEGRILRGFEIIEYFLLFFVTALLVFYACNYIDKSNL 176

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
           +  N +++ +  D L+ L N   F               + LS+   DID+FK+IND  G
Sbjct: 177 VIQN-LTETAMTDSLTNLPNMRFFTQQFGWIFTKSQKRKKSLSLFIIDIDHFKEINDFHG 235

Query: 148 HPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  G+ V+A  S  L    F       R+GGEEFA        ++AA++A+  R+ +E +
Sbjct: 236 HQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTEQAALIADFFREEVERA 295

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           +    +  S  +T+S G+A          ++   ADQALY AK++GRN++  
Sbjct: 296 KFPY-NPASGKVTVSIGVASASSNFSTTESLFEAADQALYQAKQNGRNQIAV 346


>gi|239994289|ref|ZP_04714813.1| diguanylate cyclase [Alteromonas macleodii ATCC 27126]
          Length = 532

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/250 (30%), Positives = 113/250 (45%), Gaps = 25/250 (10%)

Query: 26  TFMIYFSIFFSIFIATVIFIA--NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           T  +  S+   I    +IF     I L  I LT        LVE  S  + S   S  + 
Sbjct: 286 TLSLALSLIVMIICCAIIFYIYKRIILRLIALTN-------LVEKNSEEVASFEGSDEIS 338

Query: 84  YISGSI---LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVF 133
            ++ +     + +      + +LS  D L+ + N  AF   +         Y+  L++V 
Sbjct: 339 RLAKTFALYFERVKSQETELIRLSLSDPLTNIPNRRAFEMEMEKVIAMSKRYDWPLTVVI 398

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEA 192
            D+D FK  NDN+GHP GD+ +  ++  L  V      F  R GGEEF A    + E+ A
Sbjct: 399 LDVDSFKLYNDNYGHPKGDECLKAVAIGLNEVITRNTDFCARYGGEEFVAILPNTDEKGA 458

Query: 193 AILANDLRKIIENSQINIS-SGPSIHITISAGIAE----RCHKEPISTIIYRADQALYVA 247
            + A ++R  IE+  I  S S  S  IT S G+A       H   +++I+  AD+ALY A
Sbjct: 459 KVKAEEIRDAIESLGIEHSKSTVSPVITASLGVATVNFVNHHNWTLTSILNTADKALYDA 518

Query: 248 KKSGRNRVVC 257
           K  GRNR V 
Sbjct: 519 KTGGRNRCVF 528


>gi|257059911|ref|YP_003137799.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8802]
 gi|256590077|gb|ACV00964.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8802]
          Length = 481

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 11/181 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYF 139
             + +EL     ++ +L+ +D L+ + N   F   L     +L       S++  DIDYF
Sbjct: 296 QKMNQELHELNTKLHRLANLDGLTEVANRRCFDDCLEQEWRRLCREEKPISLILGDIDYF 355

Query: 140 KQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           K+ ND +GH  GD  +  ++  L   V      V R GGEEFA     +    A  +A  
Sbjct: 356 KRFNDTYGHLQGDDCLKQVAKALSKGVHRPADLVARFGGEEFAVLLPNTPAFGAMQVAQK 415

Query: 199 LRKIIENSQINISSGP-SIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255
           + + I   QI   +     ++T+S G+A        P  T+I  AD  L+ AK  GR+R 
Sbjct: 416 ILEEIRQLQIPHKASQAKPYVTMSLGVATVIPSLDLPPKTLIDTADGYLFQAKNQGRDRA 475

Query: 256 V 256
           +
Sbjct: 476 I 476


>gi|209551672|ref|YP_002283589.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537428|gb|ACI57363.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 794

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 84/191 (43%), Gaps = 11/191 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           ++   L E   +   I  L+  D L+ L N S F + +          N ++++   D+D
Sbjct: 333 LAVRDLTERKQAEEMIEHLAHHDVLTDLPNRSLFDTRIRQALQVAERKNTEVALFCLDLD 392

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILA 196
            FK +ND FGH  GD+++  ++  L  V G    + RLGG+EFA   + G     A  LA
Sbjct: 393 RFKAVNDIFGHAEGDRILRKVAAILRRVAGESDTIARLGGDEFAIIQSDGQQPASAQKLA 452

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
            D+      ++++ +  P+  + +S GIA           +   AD ALY  K  GR R 
Sbjct: 453 ADIIDEFA-AEMDTARDPT-AVGVSLGIALYPRDGSTAEELCNNADTALYRVKHDGRGRA 510

Query: 256 VCFSDIENNTC 266
             F    +   
Sbjct: 511 CFFDAEMDEAA 521


>gi|91792096|ref|YP_561747.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91714098|gb|ABE54024.1| diguanylate cyclase [Shewanella denitrificans OS217]
          Length = 604

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/191 (29%), Positives = 96/191 (50%), Gaps = 9/191 (4%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SY 125
           II + + L+L  +S     +L     R  QL+  D L+ L N     +           +
Sbjct: 414 IIIVLVGLILLIVSVFAYVQLKRKV-RFKQLALTDELTKLANRRHCYAKANTSLKHAIKH 472

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
               +I+ FDID+FK++ND +GH VGDKV+  ++     +      +GR+GGEEF     
Sbjct: 473 RIPFAIISFDIDHFKRVNDQWGHDVGDKVLITMAGICTNLMRKSDIIGRVGGEEFLVVLP 532

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            +++++A  +A  +   +  +Q    + P    TISAG+    ++  ++ ++ +ADQ LY
Sbjct: 533 NANKEQALEIAERIVTSVAQAQWQHLT-PDTPQTISAGVTSLTNETSLAQLLLKADQGLY 591

Query: 246 VAKKSGRNRVV 256
            AK +GRN V 
Sbjct: 592 SAKSAGRNCVR 602


>gi|324114202|gb|EGC08175.1| diguanylate cyclase domain-containing protein [Escherichia
           fergusonii B253]
          Length = 570

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/199 (25%), Positives = 90/199 (45%), Gaps = 10/199 (5%)

Query: 69  LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNH-------SAFIS 120
           L+L+    T  L++ +I    ++  +F+  + +   +  D L  L N             
Sbjct: 362 LTLLWALFTTMLIISWIVIRKMVSNMFVLQSSLQWQAWHDTLIRLYNRGALFEKARFLAQ 421

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                    S++  D+D+FK IND FGH  GD+V++  +  +          GR+GGEEF
Sbjct: 422 ECRENQRPFSVIQVDLDHFKSINDRFGHQAGDRVLSHAAGLISRSLRAQDVAGRVGGEEF 481

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIY 238
                 ++  +A  +A  +R  +   +I I+   ++ I+ S G++  E         +  
Sbjct: 482 CIVLPCANLAQAQEIAERIRLRLNEKEILIARSTTLRISASLGVSSTEETGDYDFEQLQS 541

Query: 239 RADQALYVAKKSGRNRVVC 257
            AD  LY+AK++GRNRV  
Sbjct: 542 LADGRLYLAKQAGRNRVCA 560


>gi|308050516|ref|YP_003914082.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
 gi|307632706|gb|ADN77008.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
          Length = 521

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 79/174 (45%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           K+  I   R++ L   D L+ L N +A    L         Y   L +   DID+FK IN
Sbjct: 350 KDQLIEQQRLNML---DALTQLPNRAALDERLKREYRNVRRYGNDLWVAVADIDHFKGIN 406

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+FGH  GDK +  ++  L        FV R GGEEF       S ++   + N  R+ I
Sbjct: 407 DSFGHTTGDKTLQVVAMALKNSLRKGEFVARYGGEEFVLLLPDVSAEQVGQILNRTRERI 466

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +       +   + ITIS G A     E +     RAD ALY AK+ GR+RV  
Sbjct: 467 KAIPFKFRN-EKLSITISIGAALVTGNETMQETFERADAALYRAKRKGRDRVEI 519


>gi|288940305|ref|YP_003442545.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
 gi|288895677|gb|ADC61513.1| diguanylate cyclase [Allochromatium vinosum DSM 180]
          Length = 559

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 103/251 (41%), Gaps = 36/251 (14%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLE-------------------YILVENL 69
           I   ++ +  +  +   A + L ++   P + +                    +  +  L
Sbjct: 314 IMLLVYITFSLILLALGAAVILAHVIANPIHAITNGMYRLSQGDYHTRIPEQGWGELSRL 373

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128
           +L       SL         ++    S   ++ L+  D L+GL N   F+  L  + ++ 
Sbjct: 374 TLAFNETAASL------QRAIQARLRSERELATLANTDALTGLNNRRRFMELLTQHFDRT 427

Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                  ++++ D+D FK IND++GH  GD V+  ++++L  V      +GRLGG+EFA 
Sbjct: 428 RHPANNGALLYLDLDGFKPINDHYGHDAGDAVLRIVAERLRRVVREQDHLGRLGGDEFAV 487

Query: 183 AALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                    E   +A  L + +  SQ     G  + I  S G+         S ++  AD
Sbjct: 488 LLDRLEPGFEPESVARRLDETL--SQPMTIQGQQLRIGCSLGLVHITPDSTPSRLLKDAD 545

Query: 242 QALYVAKKSGR 252
            A+Y AK +G+
Sbjct: 546 AAMYRAK-AGK 555


>gi|261339974|ref|ZP_05967832.1| GGDEF domain protein [Enterobacter cancerogenus ATCC 35316]
 gi|288317892|gb|EFC56830.1| GGDEF domain protein [Enterobacter cancerogenus ATCC 35316]
          Length = 709

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/251 (23%), Positives = 114/251 (45%), Gaps = 35/251 (13%)

Query: 37  IFIATVIFIANIFLFYIGLTP--FYGLEYIL--------------VENLSLVIISITISL 80
           I  A V+  A   + Y G++   F+ +E+I+              V  L L+ I + ISL
Sbjct: 176 IVAALVMGAAICAMHYTGMSAAHFHEMEHIVPGGISELGLSIWVSVTTLCLLGIMLIISL 235

Query: 81  LLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIV 132
           +   + +  +   L     ++   +R D L+GL N       L           +  ++V
Sbjct: 236 VDSHWRTARLTDNLQQLNRQLELQARFDALTGLANRHQMDIRLQDCLHSALLNKKSFAVV 295

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F DID+FK++ND +GH VGD+++  ++ ++       + + RLGG+ F        +++ 
Sbjct: 296 FLDIDHFKRVNDTWGHHVGDELLIAVAQRITARLTREVTLARLGGDAFILLLPDYDDEKL 355

Query: 193 AI----LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVA 247
            +    L  D+R+ +         G ++ +T+SAG++    H E +  +  +AD A+   
Sbjct: 356 NLHLTPLLEDIRRPLS------VCGHTLSVTLSAGVSLYPEHGETLHELKLKADAAMQHI 409

Query: 248 KKSGRNRVVCF 258
           K+ GRN    +
Sbjct: 410 KREGRNGWAVY 420


>gi|224824914|ref|ZP_03698020.1| response regulator receiver modulated diguanylate cyclase [Lutiella
           nitroferrum 2002]
 gi|224602585|gb|EEG08762.1| response regulator receiver modulated diguanylate cyclase [Lutiella
           nitroferrum 2002]
          Length = 408

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/158 (36%), Positives = 79/158 (50%), Gaps = 3/158 (1%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           +  L+  D L+GL N       +        I   DID+FKQIND FGH VGD VI  L+
Sbjct: 253 LEHLAHADPLTGLSNRRHLFEQVQKIRGAYGIAIIDIDHFKQINDGFGHDVGDVVIQHLA 312

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           D+L   F     V R GGEEF       +    A    +LR+ +E  +++   G ++  T
Sbjct: 313 DRLREHFPR-AIVARFGGEEFVVLMKRDAAHPLAQRLEELRQEVEREEVDSHKG-TVRYT 370

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           IS G+A       I  ++  AD+ LY AK++GRNRV  
Sbjct: 371 ISIGMAAATAP-DIRELLRLADERLYKAKQNGRNRVCA 407


>gi|218438272|ref|YP_002376601.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7424]
 gi|218171000|gb|ACK69733.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7424]
          Length = 706

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 91/220 (41%), Gaps = 18/220 (8%)

Query: 63  YILVENLSLVIISITISLLLG------YISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           YI   N  L+I  I IS +         IS   + +     +++   +  D L+ L N +
Sbjct: 226 YIRHSNGHLIIAEIRISEITWKQENAYLISLRDITDRKYITDQLQYHATHDPLTDLFNRN 285

Query: 117 AFISSLG--------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
             +  L            +  +I+F D+D FK +ND+ GH  GD+++  ++ +L    G 
Sbjct: 286 FLLEKLQNLLEKNKNQSGKSFAILFLDLDDFKVVNDSLGHLAGDQLLIMITKRLQNSLGQ 345

Query: 169 PMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
              + R GG+EF        E Q+A I A  +   +  +     +G  I I  S GIA  
Sbjct: 346 NHTLARFGGDEFTILLENIKETQDAIIAAQKIHSNL--TYPYNLNGQQIFINTSIGIALS 403

Query: 228 CHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
                    I+  AD A+Y +KK G+     F+   +   
Sbjct: 404 SPDYTHPYEILRDADIAMYQSKKQGKGACTLFNQQMHEQA 443


>gi|134099828|ref|YP_001105489.1| diguanylate cyclase [Saccharopolyspora erythraea NRRL 2338]
 gi|133912451|emb|CAM02564.1| diguanylate cyclase (GGDEF domain) [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 696

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 87/203 (42%), Gaps = 20/203 (9%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GS 124
           V+  +TI+ L+  +                +L+  D L+GL     F + L         
Sbjct: 304 VLFLLTIARLVVMVVEQ------------RRLAVTDVLTGLCTRRYFEAHLPQAMARCER 351

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
               L++   DID+FK IND +GHPVGD+V+   + +L         + R GGEEFA  A
Sbjct: 352 AGRPLAVFIIDIDHFKSINDRYGHPVGDRVLVETATRLRRAVREGDVLARYGGEEFALLA 411

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS-AGIAERCHKEPISTIIYRADQA 243
           L         +A  LR  +    + +S+     +T+S               +I  AD+A
Sbjct: 412 LDVDRAAVTGMAERLRAAVGGMPVELSTADRAWVTVSVGAAGGDGVGRSPQQLIADADRA 471

Query: 244 LYVAKKSGRNRVVCFSDIENNTC 266
           LY AK  GR+RV    ++E+   
Sbjct: 472 LYAAKAMGRDRVALGDELEHAPA 494


>gi|114763070|ref|ZP_01442500.1| diguanylate cyclase, putative [Pelagibaca bermudensis HTCC2601]
 gi|114544394|gb|EAU47402.1| diguanylate cyclase, putative [Roseovarius sp. HTCC2601]
          Length = 318

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 10/180 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQI 142
           S ++ + L  +     Q +  D L+GL N  A    L       E+ +++  D+D+FKQ+
Sbjct: 135 SRTLNRRLQGAMQAAEQRAFTDPLTGLGNRRAMDQLLQRLIRGGERFAVLHLDLDHFKQV 194

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRK 201
           ND+ GH  GD+V+  ++  ++ +      V R+GG+EF    LG +  +  + LA  L  
Sbjct: 195 NDSRGHAAGDRVLQAVARTMLDLTRKNDLVARIGGDEFVILPLGLTDHERLSDLARQLIA 254

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVVC 257
            IE   + I  G    ++ S GI+      P    ++ ++ +AD ALY AK+ GR+R   
Sbjct: 255 RIEE-PVPIEDGA-CQVSASIGISLHDPDNPSPAGVAGLLAQADSALYAAKREGRSRHAF 312


>gi|320105551|ref|YP_004181141.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Terriglobus saanensis SP1PR4]
 gi|319924072|gb|ADV81147.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Terriglobus saanensis SP1PR4]
          Length = 826

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 9/185 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
           ++    + E       +   ++ D L+GL N                   + +++   D+
Sbjct: 358 FVLTMDITEREELNRSLVHNAQHDPLTGLPNRLLLEDRAQQALLRARREKDLVALFTIDV 417

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FKQ+ND FGHPVGD+V+  ++ +L         + R GGEEF     G   +  A   
Sbjct: 418 DHFKQVNDTFGHPVGDEVLMAIAQRLKSRVREADTLARTGGEEFTLIVGGIRSEIGARKF 477

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             +   I    I + +   I  +IS G+A      + +  I  ++D+ALY AK+ GRNR 
Sbjct: 478 ASILLDIFLHPIKLPA-HEIKTSISIGVALFPEDGDTLEEIRKQSDKALYQAKRLGRNRA 536

Query: 256 VCFSD 260
           V  S+
Sbjct: 537 VFSSE 541


>gi|91226388|ref|ZP_01261187.1| hypothetical protein V12G01_06266 [Vibrio alginolyticus 12G01]
 gi|91189202|gb|EAS75482.1| hypothetical protein V12G01_06266 [Vibrio alginolyticus 12G01]
          Length = 349

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 82/173 (47%), Gaps = 9/173 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQINDN 145
           L I   ++  L+  D L+G+ N   F+    S L  Y  +     +   D+D FK +ND 
Sbjct: 172 LHIQIMKMEHLATTDDLTGIPNRREFMRQIESRLNEYRTQGIDFHVAILDLDNFKSLNDR 231

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GDK +    + +         + R+GGEEFA      S Q+A      +R  +E 
Sbjct: 232 FGHDAGDKSLIHAVNTIKSHLLDCDLLARVGGEEFAIVLRSRSSQQALDTLETIRNALET 291

Query: 206 SQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +  S G  +  T S G+ + C   +    ++ RAD ALY AK++GRNRV  
Sbjct: 292 TTVQHS-GCDMSFTASIGVTQVCRLDDSFEPLVKRADLALYKAKETGRNRVEF 343


>gi|78484545|ref|YP_390470.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78362831|gb|ABB40796.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
          Length = 352

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 88/186 (47%), Gaps = 15/186 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFK 140
            + KEL  +       +  D L+ + N  AF +++           + L ++  DID+FK
Sbjct: 165 RLRKELIEARAE----TLTDELTEVGNRKAFNNAIQDLADSTQDNPQSLVLILTDIDHFK 220

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           + ND FGH VGD V+ + ++ +         V R GGEEFA     SS ++A   A  +R
Sbjct: 221 RFNDTFGHLVGDSVLRYFANLMKKTRDDTETVCRYGGEEFAILLSHSSLEKAKERAESIR 280

Query: 201 KIIENSQINISSGPS--IHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +E +++           IT S G+A       E I   I RAD ALY AK  GRNR++
Sbjct: 281 HSLETAKLKRKDSEKTLGKITASFGVAVYKGEDHETIDDWIKRADDALYEAKNQGRNRII 340

Query: 257 CFSDIE 262
              ++E
Sbjct: 341 TDEELE 346


>gi|21231360|ref|NP_637277.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66768587|ref|YP_243349.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21113022|gb|AAM41201.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66573919|gb|AAY49329.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 987

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 98/220 (44%), Gaps = 13/220 (5%)

Query: 46  ANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE---LFISYNRISQ 102
           A      IG     GL      +  LV     ++ L+   +  + +E   L  +   ++ 
Sbjct: 761 AIALYVLIGAAVLAGL--WRWRHRHLVARERMLAELVAERTYQLEREKRELETARAALAL 818

Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            +  D L+GLLN S  + ++             L++V  D+D+FK +ND  GH VGD V+
Sbjct: 819 KASHDALTGLLNRSGVLEAMAEELQQCASAGHPLAVVLIDLDHFKLVNDEHGHLVGDAVL 878

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
           A +  +L         VGR GGEE      G ++Q    L   + + I  +   +     
Sbjct: 879 AQVGARLTNCLRDSDKVGRYGGEELLLLLPGMTQQSQHRL-RAIHEAIGATPYEVGIARP 937

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + +T S G+A     +   T++ RAD+ALY AK  GRNR+
Sbjct: 938 LRVTCSVGVAWFRSGDSTPTLLARADEALYRAKGQGRNRI 977


>gi|327481458|gb|AEA84768.1| GGDEF domain-containing protein [Pseudomonas stutzeri DSM 4166]
          Length = 396

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 107/261 (40%), Gaps = 24/261 (9%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63
           +L     +W   ++   S  P   ++   + F +    V              PF   + 
Sbjct: 131 TLLAMSELWRSRQRLSVSLRPAMGLMLLHVSFYLLRVVV----------DRGQPFGDADQ 180

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI---- 119
           +      ++  ++  ++ + +++ ++++E   +  +    S  D L+G+ N  +FI    
Sbjct: 181 VSFFAF-VIFETLLYAIGISFVTLAMVRER--AEQQYRHASLSDPLTGIGNRRSFIDAGQ 237

Query: 120 ---SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                  +  E ++++  D+D+FK++ND FGH  GD+ +      +          GR+G
Sbjct: 238 ALLQRCRARGEPVTLLLCDLDFFKRLNDTFGHQAGDRALIDFGQVIARRMRRQDVFGRIG 297

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236
           GEEFA     +       +A  +R                 +++S G+A    +  +  +
Sbjct: 298 GEEFACLLADADALIGREVAERIRGEFAAMPF----AEQGQLSVSIGVATTTSRYELDEL 353

Query: 237 IYRADQALYVAKKSGRNRVVC 257
           + +AD+ALY AK +GRN    
Sbjct: 354 MAQADRALYAAKAAGRNCTRL 374


>gi|325293377|ref|YP_004279241.1| periplasmic sensor diguanylate cyclase [Agrobacterium sp. H13-3]
 gi|325061230|gb|ADY64921.1| periplasmic sensor diguanylate cyclase [Agrobacterium sp. H13-3]
          Length = 579

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 82/175 (46%), Gaps = 10/175 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQI 142
           + K+      ++  LS  D L+G+ N  A   ++          + L ++  DID+FK I
Sbjct: 396 MEKQQSALAEQLRTLSETDALTGVSNRRALEKTVRAILSGEEQLQALGVMIVDIDHFKSI 455

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH +GD  +   +  L         + R GGEEF       S   A   A+ LR++
Sbjct: 456 NDRYGHAMGDLALQKTATLLRGALRKNDILARYGGEEFVVVLQDVSHATATATADRLRRL 515

Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255
           IE   I+  SG  + +T S G+  +  +       +I  AD  LY AK++GRNRV
Sbjct: 516 IEAQIIDEQSG--LSLTASFGVVWQEARAINSWDELIAIADDRLYEAKRAGRNRV 568


>gi|188579373|ref|YP_001922818.1| diguanylate cyclase [Methylobacterium populi BJ001]
 gi|179342871|gb|ACB78283.1| diguanylate cyclase [Methylobacterium populi BJ001]
          Length = 407

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 100/244 (40%), Gaps = 27/244 (11%)

Query: 23  SPHTFMI-YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL 81
           +P   ++   S+        +      FL    L P Y +           + ++   L 
Sbjct: 158 APRMTLVQMISVVVPFMAGAIAGGQPWFLPLCALAPLYLV----------AVAAVNRRLH 207

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVF 133
             Y++      L  +   +   +    L+GL N ++F  +L           +  +++++
Sbjct: 208 ADYVA------LLCAERALRHQALHCGLTGLPNRTSFDQALTAASAGRNDDEDHAVALLY 261

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK +ND +GH  GD ++  ++ +L  V      V RLGG+EFA    G     A 
Sbjct: 262 LDLDGFKAVNDTYGHATGDTLLQQVARRLRDVVMAADVVARLGGDEFAVLLTGRRAASAE 321

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGR 252
            +A  +   +     ++  G  I I +S GIAE          ++ RAD+ALY AK+ G+
Sbjct: 322 RVAGAIIAAV-GLPYDLGHGTLISIGVSVGIAETDACSSDSHALLVRADRALYTAKERGK 380

Query: 253 NRVV 256
               
Sbjct: 381 GTFH 384


>gi|308187368|ref|YP_003931499.1| hypothetical protein Pvag_1865 [Pantoea vagans C9-1]
 gi|308057878|gb|ADO10050.1| Uncharacterized signaling protein [Pantoea vagans C9-1]
          Length = 728

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 12/190 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           +S S+L+ L  S  +   L+  D L+GL N +     L          +++++++  D+D
Sbjct: 281 LSQSMLR-LGASEAQAQHLAFHDVLTGLPNRALVEDRLTQALALATRNDQRVALLLIDLD 339

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILA 196
            FK +ND  GH  GD++I  ++ +L  +      VGR+GG+EF           +   LA
Sbjct: 340 RFKAVNDTHGHHAGDELIIAVAQRLNRIVRASDTVGRIGGDEFIVVMPEVDNIGQVNSLA 399

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             +  I E +Q     G  +    S G+A           ++ +AD ALY AK  GR R 
Sbjct: 400 QRM--IDELAQPFTLFGSDVWSGASIGLALAPKDGIDRLELMRKADIALYEAKSGGRGRF 457

Query: 256 VCFSDIENNT 265
             F    + +
Sbjct: 458 RQFERAMDES 467


>gi|262274571|ref|ZP_06052382.1| hypothetical protein VHA_001548 [Grimontia hollisae CIP 101886]
 gi|262221134|gb|EEY72448.1| hypothetical protein VHA_001548 [Grimontia hollisae CIP 101886]
          Length = 531

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/193 (30%), Positives = 86/193 (44%), Gaps = 11/193 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKL 129
            ++L L +       +L  +  R++Q+SR D L+ + N       L         Y   L
Sbjct: 339 ALNLSLEHRVVERTAQLEEANKRLNQISREDSLTQVPNRRMLDEKLDEEWRRALRYQTPL 398

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSS 188
           SI+  DID+FKQ ND +GH +GD+ +  +++ L  V       + R GGEEF     GSS
Sbjct: 399 SILIVDIDHFKQYNDKYGHALGDQCLTKVAEALSNVERRAGALLARFGGEEFVFLLPGSS 458

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHI-TISAG--IAERCHKEPISTIIYRADQALY 245
            + A  +AN     + N  I     P   I TIS G              +   AD ALY
Sbjct: 459 RENALCVANRALDAVRNLAIPHGGSPIAPIVTISIGGKTTIPDKPNNQQQLFIDADVALY 518

Query: 246 VAKKSGRNRVVCF 258
            AK +G+N+   F
Sbjct: 519 EAKSAGKNQAFVF 531


>gi|224583808|ref|YP_002637606.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224468335|gb|ACN46165.1| hypothetical protein SPC_2029 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322714741|gb|EFZ06312.1| Cyclic di-GMP phosphodiesterase Gmr [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 663

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSDSLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 394 VFSPEMNQ 401


>gi|254458741|ref|ZP_05072165.1| response regulator PleD [Campylobacterales bacterium GD 1]
 gi|207084507|gb|EDZ61795.1| response regulator PleD [Campylobacterales bacterium GD 1]
          Length = 417

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 84/173 (48%), Gaps = 9/173 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL   +++I  ++  D L+G  N   F  S           +  L++   DID FK IND
Sbjct: 245 ELLDLFDKIRDMANKDFLTGAYNRRYFFDSGNSTYSKNKRNDTPLAVAMIDIDKFKNIND 304

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH +GD  I  +   L     T   + R GGEEF       S +   +L   +RK  E
Sbjct: 305 TYGHDIGDIAIKEVKKILDENLRTSDLMARFGGEEFCILLEDISLENIKVLFEKIRKKFE 364

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++ I+I++   I  TIS GI      + +  +I  +D+ALY AK+SGRNRV  
Sbjct: 365 DNVIDINATA-ISYTISTGI-YFGFSDSLEDMIRLSDEALYTAKESGRNRVEI 415


>gi|194451806|ref|YP_002045745.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|198242265|ref|YP_002215442.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|205358994|ref|ZP_03224186.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|194410110|gb|ACF70329.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|197936781|gb|ACH74114.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205339461|gb|EDZ26225.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|326623189|gb|EGE29534.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 663

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSDSLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 394 VFSPEMNQ 401


>gi|78778209|ref|YP_394524.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251]
 gi|78498749|gb|ABB45289.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM
           1251]
          Length = 249

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/203 (31%), Positives = 102/203 (50%), Gaps = 12/203 (5%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS 120
            + E +  +I ++ I+LLL     S+ ++L     +    +  D L+GL N      F+ 
Sbjct: 47  FIQEAVFSIISALIITLLLFL---SLREDLKKINIKAHNYAFTDGLTGLYNRHYLNDFLE 103

Query: 121 S---LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
               L   N   +++F DID FK+IND  GH  GD ++  L+ +L  +      + R GG
Sbjct: 104 KFNILQKENSMFAVIFIDIDKFKEINDTIGHLAGDCILKSLALRLKYLTQDADILCRYGG 163

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237
           EEF       SE+     A  +R+ I+NS         ++ITIS G++       I++++
Sbjct: 164 EEFVIICSDISEENIVQKAQKIREEIQNSIFECEH---VNITISIGLSFGKKGCDINSVL 220

Query: 238 YRADQALYVAKKSGRNRVVCFSD 260
             AD+ALY+AKKSGRN V  F +
Sbjct: 221 NEADEALYMAKKSGRNCVSVFDN 243


>gi|327399202|ref|YP_004340071.1| diguanylate cyclase [Hippea maritima DSM 10411]
 gi|327181831|gb|AEA34012.1| diguanylate cyclase [Hippea maritima DSM 10411]
          Length = 316

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 18/189 (9%)

Query: 82  LGYISGSILKELFISYNRISQ----------LSRIDCLSGLLNHSAFISSL-------GS 124
           + YI+ S+  EL  + N + +          LS  D L+GL         L         
Sbjct: 123 IKYINSSLKAELEAARNVLEKQRKAIENIKDLSLKDHLTGLYLRKYMNEVLDSALYNFNR 182

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           Y++  SI+  D+D FK+IND +GH  GD+V+  +   L  +        R GG+EF    
Sbjct: 183 YSKVFSIIMLDLDDFKKINDTYGHLAGDEVLKVVGSVLKRITRRSDIPIRYGGDEFIVIL 242

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
             +  ++A I+A  ++  I +             T S GI +    + + +++ R D+AL
Sbjct: 243 PETKLEDAMIVAKKIKDKIASITFK-KDKIEFKCTASIGITQVREGDTVESLLERVDKAL 301

Query: 245 YVAKKSGRN 253
           Y  K S + 
Sbjct: 302 YQTKNSQKG 310


>gi|329848059|ref|ZP_08263087.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
 gi|328843122|gb|EGF92691.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
          Length = 651

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 109/235 (46%), Gaps = 16/235 (6%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
           ++  +F    F+ +  L     L+ + V NL+LV +++ + LL+     + L E      
Sbjct: 151 LSVTLFANGPFILFFFLEGHGSLKAVAV-NLALVSVAMIMILLVYSRDFARLVESQAETR 209

Query: 99  RIS----QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFG 147
           R+S    +++ +D L+ L N   F + L   + +        ++   D+D FK +ND +G
Sbjct: 210 RLSDENFRIANLDALTDLPNRRWFFAELERRHGEATAAGAGFAVGIIDLDGFKPVNDTYG 269

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GDKV++ +  +L       + + RLGG+EF         +E          +IE  +
Sbjct: 270 HMTGDKVLSEVGRRLSKAGRDGVTLARLGGDEFGFIMGDDPSEERLKTFGA--ALIETVR 327

Query: 208 INISSGPSI-HITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  + G S   +  S G+A      +   ++  RAD ALY AK++ R  VV FS+
Sbjct: 328 LPFAIGGSHAALGASIGVARYPDSADTPESLFERADYALYHAKRNQRGHVVVFSN 382


>gi|238797532|ref|ZP_04641030.1| Diguanylate cyclase [Yersinia mollaretii ATCC 43969]
 gi|238718673|gb|EEQ10491.1| Diguanylate cyclase [Yersinia mollaretii ATCC 43969]
          Length = 397

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 92/176 (52%), Gaps = 12/176 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNF 146
           L   ++ ++  +  D L+GL N + F   L         +E  +++F D D FK+INDN+
Sbjct: 211 LTQEHDSLAHRAAHDSLTGLANRAFFEGRLSRTLSDCKPSEHAAVLFLDGDRFKEINDNY 270

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIEN 205
           GH  GD V+  ++D++  +      V RLGG+EFA       +  +  ++A+++ + +  
Sbjct: 271 GHAAGDVVLTTIADRIRALLRETDLVARLGGDEFAVLLAPIHKTDDVLLIASNIIESMSQ 330

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS---GRNRVVC 257
             I ++ G  I  ++S GIA    H +    ++ RAD+A+Y AKK+   G  RV+ 
Sbjct: 331 -PIVLADGREITTSLSIGIAIYPDHAQTPEALLQRADEAMYQAKKNIQSGGGRVIA 385


>gi|194471677|ref|ZP_03077661.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205358293|ref|ZP_03223993.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194458041|gb|EDX46880.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205335392|gb|EDZ22156.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 663

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSESLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 394 VFSPEMNQ 401


>gi|162149603|ref|YP_001604064.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161788180|emb|CAP57785.1| putative signalling protein, GGDEF family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 541

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 7/179 (3%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI------SSLGSYNEKLSIVFFDIDY 138
           I  + L+E       +   +  D L+ LLN  A          +   +E+  ++  DID+
Sbjct: 351 ILDARLRERAAQTQALKHQAETDELTQLLNRRALQILAKPRLEISEADERAFLILLDIDH 410

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND  GH  GD+V+  ++  L         V R GGEEFA      ++  A  +A+ 
Sbjct: 411 FKSINDRHGHTEGDRVLVAVAAALREQVRPDDLVARFGGEEFAILIRAHTQMTALSMAHR 470

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           LR+ + + ++  +    I +T S G+A          ++ +AD ALY AK++GRN V  
Sbjct: 471 LRRRLGSLKVVSAQNVRIPVTASFGVA-AGDNLTWRQLVAKADVALYAAKRAGRNTVRL 528


>gi|126659225|ref|ZP_01730363.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Cyanothece sp. CCY0110]
 gi|126619530|gb|EAZ90261.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Cyanothece sp. CCY0110]
          Length = 635

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 12/182 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI--------VFFDIDYFKQIN 143
           +L     ++   +  D L+GL+N   F++ L    +  S+        +F D+D FK +N
Sbjct: 182 QLLDREAQLKHDAFHDKLTGLINRELFVNLLKQEMKTASVNSDYLYGVLFIDLDGFKMVN 241

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKI 202
           D+ GH +GD ++  +S +L     +   V R GG+EFA       E   A ++A  + K 
Sbjct: 242 DSLGHLIGDDLLKVVSQRLKTCVRSSDAVARFGGDEFAILLKNLKELSLAEVIAQRILKT 301

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +  SQ    +   + I  S G+     K    + I+  AD A+Y AK+ G+    CF+  
Sbjct: 302 L--SQPFYLNNNEVAIGASIGMTFNIFKYNQATEILRDADIAMYQAKRQGKGHYQCFNPD 359

Query: 262 EN 263
             
Sbjct: 360 MQ 361


>gi|187478626|ref|YP_786650.1| signaling protein [Bordetella avium 197N]
 gi|115423212|emb|CAJ49743.1| putative signaling protein [Bordetella avium 197N]
          Length = 450

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 8/171 (4%)

Query: 97  YNRISQL-SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           + R S L S  D L+ LLN           ++     +  L+++  D+D+FK++ND  GH
Sbjct: 280 FERASHLESGRDTLTHLLNRKYLHVVMSKEVAYARKTSSPLAVLMVDVDHFKRVNDEHGH 339

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD V+  +   +        +  RLGGEEF    + ++  +A  +A +LR+ I    +
Sbjct: 340 DAGDLVLQQVGGMIATYSRGGDYTFRLGGEEFLVVLVDATATQALNIAENLRQRIAEKPL 399

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +  G    I++S G+A          ++ RAD ALY AK  GRN  V   
Sbjct: 400 TLPDGLHRRISVSIGVAAHDSHPDYQRLLKRADIALYAAKTRGRNTCVLAD 450


>gi|332307897|ref|YP_004435748.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175226|gb|AEE24480.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 563

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/195 (30%), Positives = 94/195 (48%), Gaps = 15/195 (7%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS 130
           I+  + Y + +I ++       + QLS +D L+G+ N  A    L             LS
Sbjct: 369 IADTIDYFAATIEQQKIT----LQQLSLLDGLTGIPNRRALDERLEHELKLATREKWPLS 424

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSE 189
           ++  D+D+FK  NDN+GH  GD+ +  ++  L  V   +  F  R GGEEF      + +
Sbjct: 425 LLMVDVDFFKPFNDNYGHVAGDEALVSIAQILESVAKRSGDFAARYGGEEFVFILPNTDQ 484

Query: 190 QEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKE--PISTIIYRADQALYV 246
             A  +A+ L   + N+ +     P+  HITIS GIA     E      +   AD ALY 
Sbjct: 485 TGARSVASTLLNSVRNANLEHKYNPNTDHITISVGIATGLPGEAKDADYLQRLADHALYA 544

Query: 247 AKKSGRNRVVCFSDI 261
           AK++GR++ + + DI
Sbjct: 545 AKQNGRDQAIHYLDI 559


>gi|296159799|ref|ZP_06842621.1| diguanylate cyclase with PAS/PAC and GAF sensors [Burkholderia sp.
           Ch1-1]
 gi|295890013|gb|EFG69809.1| diguanylate cyclase with PAS/PAC and GAF sensors [Burkholderia sp.
           Ch1-1]
          Length = 615

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI 100
           +   +    L Y    P  GL +   +      +    +L  G+I+   + +       +
Sbjct: 381 SAASLLPWHLEYRVRLPRQGLRWRQGDARPRR-LDDGSTLWHGFIT--DVTDRKHIEAEL 437

Query: 101 SQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLS-IVFFDIDYFKQINDNFGHPVGD 152
            +L+ ID L+ L N   F+       + +     +++ ++ FD+D+FK +ND +GH  GD
Sbjct: 438 QELATIDFLTQLPNRRHFMMQSEAELARIRRAGGRVAAVLMFDLDHFKALNDRWGHAAGD 497

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             ++  +  L         VGRLGGEEFA     +    A  LA  ++     + +    
Sbjct: 498 SALSHFAALLRAEVRAGDIVGRLGGEEFAMVLPNTDTDAAIALAGRVQHRTARTPLQHGD 557

Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              + +T+S GI   R         + R D+ALY AK+ GRNR+  + D
Sbjct: 558 EH-LALTVSIGIDIMRVTDIGAYQSLSRGDKALYRAKERGRNRIEIYGD 605


>gi|293604367|ref|ZP_06686774.1| CBS/GGDEF/EAL domain protein [Achromobacter piechaudii ATCC 43553]
 gi|292817244|gb|EFF76318.1| CBS/GGDEF/EAL domain protein [Achromobacter piechaudii ATCC 43553]
          Length = 505

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 111/251 (44%), Gaps = 30/251 (11%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL-SLVIISITISLLLGY----- 84
            S+  +    ++ ++A   LF  GL  +  L   L   L S V   +  +L LG      
Sbjct: 259 MSLVTTDLYRSIGWLALGTLFAFGLGLWLALR--LANRLTSAVQGLVGPALALGEGRTVE 316

Query: 85  ISGSILKE-------LFISYNRI---SQLSRIDCLSGLLNHSAF-------ISSLGSYNE 127
           ++G+ +KE       L  +   +     L+  D L+GL N   F       +S      E
Sbjct: 317 LAGTSVKEAEEVGTALLQASRMLAHAQHLAHYDPLTGLCNRVLFGELVLRELSVAQRSGE 376

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
             +++  D+D FK +ND  GH  GD V+   +D++           RLGG+EFA   +G 
Sbjct: 377 SFALLAIDLDGFKAVNDLHGHAAGDTVLKEAADRMARAIRVSDVAARLGGDEFAVLLMGV 436

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYV 246
            +++A  +A  L   +E+  +    G  + ++ S GIA        +  ++ RAD ALY 
Sbjct: 437 GQEQAQAVAEAL---VESLSLPYP-GIDVAVSASVGIAIYPDSGITMLQLLERADVALYK 492

Query: 247 AKKSGRNRVVC 257
           AKK G+ RV  
Sbjct: 493 AKKEGKRRVAW 503


>gi|260768013|ref|ZP_05876947.1| GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260616043|gb|EEX41228.1| GGDEF family protein [Vibrio furnissii CIP 102972]
          Length = 718

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 101/229 (44%), Gaps = 14/229 (6%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN- 98
           A V+    I   +  +        I +    ++   + ++  +   +    +E+      
Sbjct: 492 AYVMHTGFILSSWYWIYLLLSTGVIAIGLYRILTHRVQVTKAVSDATEHWQQEVERRQEV 551

Query: 99  -RISQ-LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
             + + L+  D L+G+ N   F       ++   +  +  ++ + D+D FK +ND++GH 
Sbjct: 552 VELERRLATQDELTGIANRRHFYDLAHDHLAQARAQGQPFTLYYMDLDGFKDVNDSYGHS 611

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD+V+  ++ +L         V R GG+EF A    + +         +  I  ++ I 
Sbjct: 612 MGDEVLKVVAHRLQNSVRAQDIVARFGGDEFVAILRNTDDDCFYKSQQIIEAI--SAPIV 669

Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           I   P++ I IS G A    H + I  ++ +AD ALY AK+ G+N +V 
Sbjct: 670 IDGSPAL-IGISIGAAVYPTHGDSIEALLVKADSALYQAKRRGKNCLVV 717


>gi|284991508|ref|YP_003410062.1| diguanylate cyclase/phosphodiesterase [Geodermatophilus obscurus
           DSM 43160]
 gi|284064753|gb|ADB75691.1| diguanylate cyclase/phosphodiesterase [Geodermatophilus obscurus
           DSM 43160]
          Length = 517

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 10/184 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           + +  +   ++ L+  D L+GL N + F   L            ++++VF D+D FK +N
Sbjct: 64  QRVRRTEADLATLAFSDVLTGLANRALFTDRLELALRRTARSGGEVAVVFLDLDGFKAVN 123

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKI 202
           D+ GH  GD++I  +   L     +   + RLGG+EFA     S   +EA  +A   R +
Sbjct: 124 DSLGHAAGDRLIREVGTLLQSAVRSEDTLARLGGDEFAILVERSPGVEEATRIAE--RAL 181

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              +      G  + ++ S GIA        S+++  AD A+Y AK +G  R V F+   
Sbjct: 182 AALAGPVDLGGQRVTVSASIGIATGDVAATASSLLRDADNAMYWAKGAGAGRYVVFNPQM 241

Query: 263 NNTC 266
            +  
Sbjct: 242 RSAA 245


>gi|157363566|ref|YP_001470333.1| diguanylate cyclase [Thermotoga lettingae TMO]
 gi|157314170|gb|ABV33269.1| diguanylate cyclase [Thermotoga lettingae TMO]
          Length = 535

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 10/177 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFF 134
           +G     +  EL    N+  +++  D L+G      F          +      +S++  
Sbjct: 360 VGLKVKMLFDELDNERNKYRKIAITDPLTGCYTRYYFTEYFDRFQGIIERKGGTISLIMI 419

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND +GH VGDKV+  +   L         V R GG+EF      + + +A  
Sbjct: 420 DVDRFKTINDKYGHIVGDKVLREIGQTLTKCVRKMDLVVRYGGDEFLIMLSDTDKSKAKR 479

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           +AN L K +    I         ITIS GI+     + +  ++  AD+ +Y  K+ G
Sbjct: 480 IANRLAKRVSEIIIPELDEQ---ITISFGISVYDGSKSLEDVLKIADRTMYKQKRRG 533


>gi|126739551|ref|ZP_01755243.1| hypothetical protein RSK20926_04827 [Roseobacter sp. SK209-2-6]
 gi|126719197|gb|EBA15907.1| hypothetical protein RSK20926_04827 [Roseobacter sp. SK209-2-6]
          Length = 644

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 7/175 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPV 150
             S  +   L++ D L+GLLN  +F+       ++   +++ + D+D FK IND FGH +
Sbjct: 209 ERSRKKAEYLAKYDPLTGLLNRRSFVEQAEQCIQEKSLVAVCYIDLDRFKAINDTFGHAI 268

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD  +  ++  L     +   + R GG+EF          EA      +R I++     +
Sbjct: 269 GDAFLTHVAQILKENSNSGDLLSRFGGDEFVIGFCEVPLDEAI---QTVRNILKECARKV 325

Query: 211 SSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             G  S+  ++S G+        +  I+  AD ALY AK +GRN    + +   +
Sbjct: 326 ELGAISLEASVSIGVVAVEEAGSLEVILNNADAALYFAKNAGRNDFAIYGEEMGD 380


>gi|330980029|gb|EGH78295.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 897

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + +  ++  RI +L+  D L+ L N  AFI +L        +  +S++  DID FK+IN
Sbjct: 454 DITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDERFARDTDTPMSLLLVDIDNFKRIN 513

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++  L+ +L         + R    EFA     + ++     A  +   +
Sbjct: 514 DSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLIDNTDQEAGQATATQVLATL 573

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I +T S G+A    H     T++  A  AL+ AK +G+++V  F++  
Sbjct: 574 DKPMF--VDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFTEAL 631

Query: 263 NNTC 266
           N   
Sbjct: 632 NAEA 635


>gi|256823698|ref|YP_003147661.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Kangiella koreensis DSM 16069]
 gi|256797237|gb|ACV27893.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Kangiella koreensis DSM 16069]
          Length = 1515

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 87/196 (44%), Gaps = 12/196 (6%)

Query: 81   LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVF 133
            ++ Y+   S +     +   + +L+ +D L+ L N ++F +            ++ +++F
Sbjct: 1052 IINYVGVFSDITFRKQAERELRRLATVDQLTDLKNRTSFRTLFEHLIEDSGRGDQHALLF 1111

Query: 134  FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSE-QE 191
             D+D FK+IND+ GH +GD+++ +++  L  +       V RLGG+EF           +
Sbjct: 1112 IDLDNFKRINDSLGHGIGDELLIYVAKILQEIVSDQNGVVARLGGDEFTVLLQEVDTWNK 1171

Query: 192  AAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKS 250
             A +A  +      S     S   + ++ S GI            ++  AD A+Y AKK 
Sbjct: 1172 PAKIAQAILDEFAKSLP--LSTAEVVVSPSIGIVMYPENGTSAEELLKNADTAMYYAKKK 1229

Query: 251  GRNRVVCFSDIENNTC 266
            G+N    ++   N   
Sbjct: 1230 GKNTYQFYTRQMNEQA 1245


>gi|255598018|ref|XP_002536908.1| conserved hypothetical protein [Ricinus communis]
 gi|223518148|gb|EEF25477.1| conserved hypothetical protein [Ricinus communis]
          Length = 175

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 7/168 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
           +  Q +  D L+GL+N   F S+L         E+  ++  DID+FK++ND++GH  GDK
Sbjct: 2   KAKQEAISDGLTGLMNRKGFDSALHQCLDTGPAEETCVMIADIDFFKKVNDSYGHLFGDK 61

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           VI  ++  L  V G      R GGEEF      +S   A  +A ++R+ +    I  +  
Sbjct: 62  VIQAVARILKTVSGNLYTAARYGGEEFVLLLPHTSMDIAHEIAENIRRQVAAITIKNNVT 121

Query: 214 PSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +  +ITIS G+      E   + I RADQALY +K  GRN+V   S
Sbjct: 122 QRLISNITISMGVTAYHPGESADSFITRADQALYTSKAQGRNQVTMLS 169


>gi|148555580|ref|YP_001263162.1| diguanylate cyclase [Sphingomonas wittichii RW1]
 gi|148500770|gb|ABQ69024.1| diguanylate cyclase [Sphingomonas wittichii RW1]
          Length = 390

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/265 (23%), Positives = 114/265 (43%), Gaps = 20/265 (7%)

Query: 8   FLSIWLCHEKN--LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYIL 65
            ++I   H       +  P   +    + F++    +  IA           F     IL
Sbjct: 134 MMAISAAHVGRGFRTASLPERSVTLMLMLFALLDGAMAVIALRQGIVGQGEAFALFRTIL 193

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS- 124
           +  L      I + L   ++  + L E   +      L+  D L+G+ N   F  +    
Sbjct: 194 L--LLYPPAFIGVGLFSVFLVAADLAETMRT------LATSDMLTGVYNRRGFEDAAERA 245

Query: 125 ------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                   + LS+V  DID FK IND +GH VGD+ +   + ++  +      +GR+GGE
Sbjct: 246 IRNAHRQRQPLSVVVADIDGFKAINDRYGHGVGDRALRHFASRIERLVRRGDLIGRIGGE 305

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTII 237
           EFA   + +  Q+A  +   +R+ I    ++      + +T S G+      +  +++++
Sbjct: 306 EFALLLVNTRPQDAVEVVERIRRDIAAMPVSGPD--RVVMTASFGLTGLRPGDISLASLL 363

Query: 238 YRADQALYVAKKSGRNRVVCFSDIE 262
            RAD+ALY +K  GR+RV    ++E
Sbjct: 364 ARADRALYRSKLDGRDRVTSAEELE 388


>gi|160896650|ref|YP_001562232.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Delftia acidovorans SPH-1]
 gi|160362234|gb|ABX33847.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Delftia acidovorans SPH-1]
          Length = 692

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
             +    ++  R+  L++ D L+ L N    I  L             L+++  D+D+FK
Sbjct: 242 RDITLRQLAQERMDFLAQHDQLTQLPNRVRLIQMLRQALSLASVKRRALAVLIIDLDHFK 301

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
            IND+ GH  GD ++  ++ +L         V R+GG+EF          QE    A+ L
Sbjct: 302 TINDSLGHQAGDLLLCEVAQRLRGSVRAHDLVARVGGDEFVVVLTDDPDPQETETQASHL 361

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           ++IIE        G  + I+   GIA      +    ++ RA+ A+++AK SGR  +  +
Sbjct: 362 QRIIEA--PCAIDGTPLVISPCMGIAMYPGDGKNAEELLNRAESAMHMAKDSGRRNLQFY 419

Query: 259 SDIENNTC 266
           +  ++   
Sbjct: 420 APAQDGQA 427


>gi|310780255|ref|YP_003968587.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
 gi|309749578|gb|ADO84239.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926]
          Length = 313

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 80/174 (45%), Gaps = 11/174 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--------KLSIVFFDIDYFKQIN 143
           +L ++  +I++L   D L+ L N   F   L              + I+F DID+FK IN
Sbjct: 141 QLKLANEKITKLLNTDFLTDLYNRKHFFERLEELVSLKKRKDCLNIGIIFADIDFFKTIN 200

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD V+   S  L         + R+GGEEF       ++     ++  LRK  
Sbjct: 201 DTYGHDTGDLVLIKFSQMLKESLRKEDIIARIGGEEFCIIVQCGTDNCLTNISEKLRKNC 260

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           E+    I     I +T S G       E I + I RAD+ +Y AK +GRN+V+ 
Sbjct: 261 ESM---IFDNIDIKLTASFGATFYRVGEEIDSTIKRADENMYKAKDTGRNKVIF 311


>gi|254457551|ref|ZP_05070979.1| ggef/eal/pas/pac-domain containing protein [Campylobacterales
           bacterium GD 1]
 gi|207086343|gb|EDZ63627.1| ggef/eal/pas/pac-domain containing protein [Campylobacterales
           bacterium GD 1]
          Length = 415

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 84/182 (46%), Gaps = 11/182 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYF 139
              + E      ++   +  D L+GL N + F+  L    ++        +++F D+D+F
Sbjct: 234 AHDINERKEHEEQLKIYASHDALTGLANRTLFLERLSQLLKQRESDINVHAVLFIDLDHF 293

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND  GH  GDKV+  ++ +L  +      + R GG+EF        S  EAA +A  
Sbjct: 294 KVINDEKGHATGDKVLVEVAHRLRGLIRKGDTLSRFGGDEFTILLENIHSADEAAKVAQK 353

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           +   +   +  I +  +  +T S GI+   +       +++ AD A+Y AK +G++    
Sbjct: 354 ILDKLR--EPIIINEDNYQVTTSIGISLSPYNSKDSEVLLHYADVAMYKAKSNGKDGYNF 411

Query: 258 FS 259
           F+
Sbjct: 412 FT 413


>gi|330957105|gb|EGH57365.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 897

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + E  ++  RI +L+  D L+ L N  AFI +L        +  +S++  DID FK+IN
Sbjct: 454 DITESKLAQQRIERLAYTDNLTNLGNRPAFIRNLDERFARDTDTPMSLLLVDIDNFKRIN 513

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++  L+ +L         + R    EFA     + ++     A ++   +
Sbjct: 514 DSLGHQTGDKLLISLARRLRNTLSPTDVLARFASNEFAVLLDNTGQEAGQTTAAEVLATL 573

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I +T S G+A    H     T++  A  AL+ AK +G+++V  F++  
Sbjct: 574 DKPMF--VDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFTEAL 631

Query: 263 NNTC 266
           N   
Sbjct: 632 NAEA 635


>gi|290510614|ref|ZP_06549984.1| membrane-associated diguanylate cyclase [Klebsiella sp. 1_1_55]
 gi|289777330|gb|EFD85328.1| membrane-associated diguanylate cyclase [Klebsiella sp. 1_1_55]
          Length = 379

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 68/276 (24%), Positives = 124/276 (44%), Gaps = 33/276 (11%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIF---IANIFLFYIGLTPFYGLEYI 64
            L++ LC      S S + F+ ++++ F+  +  ++    +  ++  + G+  F    ++
Sbjct: 107 LLALSLC-----WSLSNYCFIFFWTLPFAWPLLVILMTTGLTALYHHWPGIIAFMLPMWV 161

Query: 65  LV-------------ENLSLVIISITISLLLGYISGSILKELFISYN-------RISQLS 104
                            L+L  I   I L    I      E + ++        R+  ++
Sbjct: 162 TALLAGVQIHYDGEFRFLTLWAIFTAILLYGRRILQRWYDEAWDTHQENMQLIQRLESIA 221

Query: 105 RIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
             D L+G  N  A   F++ L      L+++  D+DYFK+ ND++GH  GD  ++ ++  
Sbjct: 222 NRDALTGTANRRALNAFLAQLWEQKAPLALIMIDVDYFKRYNDHYGHQAGDDCLSSVAQV 281

Query: 162 LVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHIT 219
           L +        V R GGEEF  A  G S   A ++A  +++ I ++ +    S  +  +T
Sbjct: 282 LKMAVRAEDDLVARYGGEEFVVALPGVSLAHATVIAERIQQKIHDAALPHEASAVAAVVT 341

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S G+       P+ T+I RAD ALY AK  GRN+ 
Sbjct: 342 VSMGVVASDGTVPMETLIARADSALYQAKNKGRNQW 377


>gi|239907560|ref|YP_002954301.1| putative signaling protein [Desulfovibrio magneticus RS-1]
 gi|239797426|dbj|BAH76415.1| putative signaling protein [Desulfovibrio magneticus RS-1]
          Length = 893

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/182 (33%), Positives = 91/182 (50%), Gaps = 9/182 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFD 135
            +I  + + E       +  L+  D L+G+ N   F+        S   YN + S+  FD
Sbjct: 688 AFIMITDISEQKNLELNLLMLATKDGLTGVSNRHHFMEISGALLSSATRYNTEFSVAIFD 747

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID FK +ND +GH  GD V+  +       F +   +GRLGGEEFA +   +S + AA  
Sbjct: 748 IDNFKMVNDTWGHSAGDMVLKKICTLATAEFRSSDIIGRLGGEEFAISMPETSLENAAAA 807

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
               R I+E++       P I+ITIS+G+A    H + I  ++  AD  LY AK+ GRN+
Sbjct: 808 VERFRTIVESTIFEYDEIP-INITISSGVAACSKHTKAIDCLLKSADNFLYKAKRHGRNQ 866

Query: 255 VV 256
            V
Sbjct: 867 TV 868


>gi|152990614|ref|YP_001356336.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
 gi|151422475|dbj|BAF69979.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
          Length = 651

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 83/178 (46%), Gaps = 9/178 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDN 145
           + K L     ++ + +  D L+GL N S   + L      N    ++F DID FK IND 
Sbjct: 214 LFKMLTQYEVKLIKRANFDLLTGLYNRSFLETKLRDLITKNIPFYLLFIDIDNFKTINDT 273

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH VGD+++   ++++  +        R+GG+EF             I+   + KI   
Sbjct: 274 KGHNVGDEILKNFANRIRNILRKDDIFARVGGDEFVIIIQNIDSP--KIITKIVDKIFHK 331

Query: 206 SQINISSGPS---IHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            Q  I   PS    HI+IS GI E     + +  I+  AD A+Y +K+ G+NR   F+
Sbjct: 332 LQPPIVLSPSKNMYHISISIGIVEFPKDGKSVEDILKNADIAMYRSKERGKNRFSFFN 389


>gi|146309464|ref|YP_001189929.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas mendocina ymp]
 gi|145577665|gb|ABP87197.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas mendocina ymp]
          Length = 765

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 11/190 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--------EKLSIVFFDID 137
           S S + +   +  ++   +R D L+GL N +     L             + +++F D+D
Sbjct: 302 SQSDISQRRAAQEQLHHAARHDPLTGLANRARLGELLQQALQRQQRPGAREAALLFIDLD 361

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILA 196
            FK IND+ GH +GD+V+  ++++L         + R GG+EF A     +   +A  +A
Sbjct: 362 RFKLINDSLGHQIGDRVLVEVAERLSHCLRPGDHLARFGGDEFVALLDDLACMGDAERVA 421

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +   +           ++ +T S GIA    +      +  AD ALY AK +G+ +  
Sbjct: 422 QRMLDSL--HPPLRLQEQTLAVTASIGIAALQERGHPLDPLQAADLALYRAKSAGKAQFA 479

Query: 257 CFSDIENNTC 266
            +S       
Sbjct: 480 RYSSELQQQA 489


>gi|77163761|ref|YP_342286.1| PAS sensor diguanylate cyclase and phophodiesterase [Nitrosococcus
           oceani ATCC 19707]
 gi|254435136|ref|ZP_05048643.1| PAS fold family [Nitrosococcus oceani AFC27]
 gi|76882075|gb|ABA56756.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosococcus oceani ATCC 19707]
 gi|207088247|gb|EDZ65519.1| PAS fold family [Nitrosococcus oceani AFC27]
          Length = 591

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 12/215 (5%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLL 113
           L   +G EY +   +S   I    + +LG +     + E       I+  ++ D L+GL+
Sbjct: 101 LISRHGAEYSI--EISAAPIRDANNQVLGAVLVFHDVSEQRRLQCEIAHQAQHDALTGLV 158

Query: 114 NHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N   F   L          N + ++ + D+D FK +ND  GH  GD ++  L+       
Sbjct: 159 NRREFERRLQRVIETVQTQNSEHALCYLDLDQFKLVNDTCGHASGDALLQQLAVLFEKNI 218

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
                + RLGG+EF       S   A  +AN LR+ +E  +    +G    I +S G+  
Sbjct: 219 RRRDTLARLGGDEFGLLLEHCSLDRALQIANTLRQTVEGFRF-CWNGQHFRIGVSIGLVP 277

Query: 227 RC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                   ++++  AD A YVAK  GRNR+  + +
Sbjct: 278 ITIANSSAASVLQTADSACYVAKDGGRNRIHIYRE 312


>gi|84624372|ref|YP_451744.1| c-di-GMP phosphodiesterase A [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188576007|ref|YP_001912936.1| C-di-GMP phosphodiesterase A [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|84368312|dbj|BAE69470.1| c-di-GMP phosphodiesterase A [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188520459|gb|ACD58404.1| C-di-GMP phosphodiesterase A [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 747

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 12/184 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           E      R+ QL+  D L+GL N   F +             E  ++VF +ID FK IND
Sbjct: 309 EREQIRQRVHQLAFYDTLTGLPNRIMFSARAEQALTQAEYAGEPAALVFINIDRFKLIND 368

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH  GD ++  ++ ++         + RL G+EFA A    S ++A+ +A  +   I 
Sbjct: 369 SQGHAAGDGLLRDIALRINDQLTATAMLARLSGDEFALALPQCSAEQASAVAERVLVSIA 428

Query: 205 NSQINISSGP-SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           N    +  G  ++H + S G+A        I+ ++  AD A+  AKK G  R   FS   
Sbjct: 429 N---PLPVGHMTVHPSASIGVAMFPEDGREINILLRHADLAMNRAKKEGGGRFRFFSADM 485

Query: 263 NNTC 266
           N   
Sbjct: 486 NRMA 489


>gi|109898406|ref|YP_661661.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c]
 gi|109700687|gb|ABG40607.1| response regulator receiver modulated diguanylate cyclase
           [Pseudoalteromonas atlantica T6c]
          Length = 306

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 9/173 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
           L    + + +L+ +D L+G+ N       L          N+ +S++  D+D FKQ ND 
Sbjct: 134 LKFQADVLKKLAYLDGLTGVYNRRYLDEYLAKQVAQAKRTNQPISLLMVDVDLFKQYNDE 193

Query: 146 FGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH V D  +  ++  +            R GGEEF      + E+ A  +A  +++ ++
Sbjct: 194 YGHLVADDQLKLVALTVRSSLNRPTDIAARYGGEEFTCVLPNTDERGAKHVAKKIQQAVD 253

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256
             +I+    P   +T+S G++     +   S +I  AD+ LY AK +GRN+VV
Sbjct: 254 QLKISHRLSPHQILTVSIGVSTILPDQNYSSDLISIADKNLYKAKHTGRNKVV 306


>gi|330721171|gb|EGG99287.1| sensory box/GGDEF domain protein [gamma proteobacterium IMCC2047]
          Length = 326

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/180 (29%), Positives = 80/180 (44%), Gaps = 10/180 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQ 141
           +  L      I +   +D L+ + N   F + L           +  L+++  DID+FK+
Sbjct: 142 ISNLRKELQSIQKEVTLDALTKINNRRGFDTRLQHEIDQQAVNPSRPLALIVTDIDHFKR 201

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            ND +GH +GDK++   +  L        F  R GGEEF       +  +AA +A  +R 
Sbjct: 202 CNDKYGHVLGDKILQSFAKVLEHCCDGVGFCARYGGEEFVVILPDHNLAQAAGIAEKIRL 261

Query: 202 IIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             E  +I           +T S G+A     E   + I RAD  LY AK+ GRN+VV  S
Sbjct: 262 TTERMKIKQRDQEETVDQLTTSLGVALYQPGESTISFIERADHYLYQAKEGGRNQVVAES 321


>gi|311899817|dbj|BAJ32225.1| putative signaling protein [Kitasatospora setae KM-6054]
          Length = 726

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFFDIDYFKQI 142
            + E +    R+   +  D L+GL N +AF   L    E      +  + + D+D FK +
Sbjct: 267 DVTERYRLQERLRHQATHDPLTGLPNRAAFFERLEKIFEEPEPDTRFGLCYVDLDGFKVV 326

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           ND+ GH +GD+++  ++ +L          V RLGG+EF         EQEA   A  + 
Sbjct: 327 NDSLGHDMGDQLLTIVARRLENALSPLGHMVARLGGDEFVVLLENCRGEQEAVAAAKTVL 386

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +  ++  +     + +  S G+ ER          +  AD  LY AK++GR R   F 
Sbjct: 387 AAL--TKPVVIGDHRLAVGASVGVLERRIASTTPGAAVRAADLTLYRAKEAGRGRWTLFD 444

Query: 260 DIENNTC 266
             EN   
Sbjct: 445 PKENARA 451


>gi|254507818|ref|ZP_05119948.1| ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219549191|gb|EED26186.1| ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 490

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/252 (25%), Positives = 107/252 (42%), Gaps = 17/252 (6%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS-----LVIISITISL 80
            F+ +  +   +  A  +F  N+ + +I + P       L + +S     L      IS 
Sbjct: 238 PFITWGELSAVLAFAVFMFAFNLSVVHIMVRPIKRARSALDQLMSGESSQLTQQDTFISY 297

Query: 81  LLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVF 133
            +    Y    ++ +L      +  ++  D L+ + N  +        +    +  S++ 
Sbjct: 298 EMRDFVYRVNEVISQLESKQQELEWIAHHDALTKVGNRRSLQQHWQTLVEKQPKHTSLLL 357

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEA 192
            DID+FK  ND++GH  GD V+  ++  L         FV R GGEEF       S    
Sbjct: 358 IDIDFFKPFNDHYGHVEGDNVLQQVATALKEAPTESSKFVARFGGEEFCVVLSNDSPLNN 417

Query: 193 AILANDLRKIIENSQINISSGP-SIHITISAGIAE--RCHKEPISTIIYRADQALYVAKK 249
              A  LR  +E  +I     P + H+T S G+A+        +  +   AD+ALY AK 
Sbjct: 418 RQEAEWLRAAVETLKIRHHYSPIAAHLTASIGVADCGLQPLGDLQDLFLVADRALYEAKD 477

Query: 250 SGRNRVVC-FSD 260
           +GRN+VV  FS+
Sbjct: 478 AGRNQVVIHFSE 489


>gi|238786644|ref|ZP_04630445.1| Diguanylate cyclase [Yersinia frederiksenii ATCC 33641]
 gi|238725012|gb|EEQ16651.1| Diguanylate cyclase [Yersinia frederiksenii ATCC 33641]
          Length = 404

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 9/167 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQIND 144
           K L    + ++  +  D L+GL N + F   L         NE  +++F D D FK+IND
Sbjct: 212 KHLTQENDSLAHRAAHDSLTGLANRAFFEGRLSRTLKDCKTNEHAAVLFLDGDRFKEIND 271

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKII 203
           N+GH  GD V+  ++D++  +      V RLGG+EFA          +   +A+++ + +
Sbjct: 272 NYGHAAGDVVLTTIADRIRALLRESDLVARLGGDEFAVLLAPIHDTDDVLTIADNIIESM 331

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
               I +  G  I  ++S GIA    H +    ++ RAD+A+Y AKK
Sbjct: 332 -TQPIVLVDGIEITTSLSIGIAVYPDHAQTPEELLQRADEAMYQAKK 377


>gi|323492479|ref|ZP_08097627.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
 gi|323313266|gb|EGA66382.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
          Length = 509

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/214 (28%), Positives = 103/214 (48%), Gaps = 17/214 (7%)

Query: 59  YGLEYILVENLSLVIISI-----TISLLLGYISGSILKE-------LFISYNRISQLSRI 106
           + L+  +  N S+V+ +I     TI+ LL YI   ++++       L      +  L   
Sbjct: 296 FKLDRQVTHNDSVVLAAIFVSGLTIACLLSYIVLLLVRDKEHLAVLLDERTEELQFLVMH 355

Query: 107 DCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+G+ N  AF   L      N+  S++ FD+D FK IND+FGH  GD+++  ++  + 
Sbjct: 356 DSLTGIYNRRAFSQYLRELVRTNQGFSLITFDVDRFKLINDHFGHVAGDEMLVCVAQIVQ 415

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                     R+GG+EF   +  + +Q+     N +R  +    ++  SG  I  T+S G
Sbjct: 416 RHLADEDLFVRMGGDEFCILSTVTDKQQLGEYLNAIRCAVAEL-VHTHSGQRIRCTLSIG 474

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            A R   E    I+  +D  LY +K++GRNRV  
Sbjct: 475 AAIRR-DEGEEDIMQASDAQLYKSKQAGRNRVSI 507


>gi|304407948|ref|ZP_07389598.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9]
 gi|304342967|gb|EFM08811.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9]
          Length = 590

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 105/243 (43%), Gaps = 16/243 (6%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS---------LVIISITI 78
           +IY +    + ++  + +A    F   +T       IL++ ++         L I    +
Sbjct: 350 LIYIAFGVVVGLSVALSVAIYVYFNKAITRPIIRTSILLKEMAEGDLSRSKGLEIKQEQV 409

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFD 135
           SL +  +S  +   +   +       R D L+GL N   F + +          +++  D
Sbjct: 410 SLAIQEVS-ELYTHVVQVHQSFQTQIRHDSLTGLFNRRMFDNVIQDWVDQRLPFALLLLD 468

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D FK IND FGH  GD+V+  L++ ++          R GGEEF       +  E   L
Sbjct: 469 VDNFKTINDTFGHLTGDEVLKKLAETMLAASREEDVCFRYGGEEFGILLQRDTADELYAL 528

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  LR+ +   +      P   IT+S GIA      E  S++I RAD ALY +K  G++R
Sbjct: 529 AEQLRQNVHGLRGKDLDLP--PITVSIGIASLHVMDESPSSVIERADAALYESKARGKDR 586

Query: 255 VVC 257
           V  
Sbjct: 587 VTL 589


>gi|317151753|ref|YP_004119801.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942004|gb|ADU61055.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
          Length = 352

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 78/183 (42%), Gaps = 15/183 (8%)

Query: 91  KELFISYNRISQLSRIDCL-SGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQ 141
           +EL      +   +  D L + L N  A  + + +            LS++  D+D+FK+
Sbjct: 167 RELQERTQALEHTANFDPLLTELHNRRALDAHVQASVLALRKGQGGPLSLMMIDVDHFKR 226

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +ND FGH  GD V+  L+  +         F  R GGEE   A        A + A  LR
Sbjct: 227 VNDTFGHQAGDDVLHALARIITAHAIQYQGFAARYGGEELVVAVRNMPLDTAVLKAEALR 286

Query: 201 KIIENSQINIS-----SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +EN           S   +  T+S G+AE       + +I  AD A+Y AK  GRNRV
Sbjct: 287 MDVENYDFRTRTEGRLSEIPLQFTVSIGVAECRPDWDAARLISAADTAMYEAKAHGRNRV 346

Query: 256 VCF 258
             +
Sbjct: 347 NAY 349


>gi|289433042|ref|YP_003462915.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Dehalococcoides sp. GT]
 gi|288946762|gb|ADC74459.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Dehalococcoides sp. GT]
          Length = 743

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 89/185 (48%), Gaps = 12/185 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           ++ E    Y + +  +  D L+ L NH  F   +         +    S++  D+D FK 
Sbjct: 353 VIIENAQLYTQATIRANTDELTRLYNHRHFHERIEQEIARGSRFGNTFSLILLDLDLFKV 412

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            ND +GH  GD+++  L   L     +     R GGEEFA    G+  ++A  +A  +RK
Sbjct: 413 YNDVYGHLAGDQLLRRLGKILENSIRSIDMAFRYGGEEFAIMLPGTKIEDAYHVAERIRK 472

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFSD 260
            IE+     SS   + IT S G+A       +   II +AD ALY +K++GRNR    +D
Sbjct: 473 NIESK----SSFRDMPITASLGLANWPTDGVMKEEIIAKADAALYRSKETGRNRTSLPAD 528

Query: 261 IENNT 265
           + NN+
Sbjct: 529 LNNNS 533


>gi|259156648|gb|ACV96591.1| response regulator receiver protein [Vibrio fluvialis Ind1]
          Length = 309

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 8/173 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNE---KLSIVFFDIDYFKQINDN 145
           L    + +  L+ +D L+G+ N   F +     L  +      L+++  DIDYFK+ ND 
Sbjct: 134 LKRQADLLRSLAYLDGLTGIYNRRYFDNVLSIQLAQHRRKLSPLAVLMIDIDYFKKYNDT 193

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GD  +  ++  L  +      V R GGEEF      +    A  +A  +   +  
Sbjct: 194 FGHLAGDDALRKVASALKHIGRQADMVARYGGEEFVVLLADTDINGAVTVAKKMLHHVLE 253

Query: 206 SQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVC 257
             I     P+  ++IS GIA     +   + II  ADQ LY++K+ GRN    
Sbjct: 254 LDIAHPQTPATKLSISVGIAVADEAKGYDSNIIELADQQLYLSKQRGRNTYSV 306


>gi|198284744|ref|YP_002221065.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|198249265|gb|ACH84858.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Acidithiobacillus ferrooxidans ATCC 53993]
          Length = 874

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 11/181 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            + E     + ++QLS  D L+GL N  A        ++    +   LS+V  D+D FK 
Sbjct: 316 DVTERHRLMDELTQLSLSDPLTGLPNRRALDTELGKAMARADRHEHLLSVVMIDLDGFKP 375

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLR 200
           +ND  GH  GD V+  +  +L        FV RLGG+EF       +  +E  ++   + 
Sbjct: 376 VNDTCGHEAGDMVLRTIGQRLRKGLRGTDFVARLGGDEFVLLLENCTALEEIEVVMRKIG 435

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCF 258
           ++I    I +       I +SAGI      +      ++  ADQALY +K    +RV  +
Sbjct: 436 EMIRQ-PIELPDKSRAEIDLSAGICLYPFGDSHNPDALLRYADQALYESKNHKADRVHYW 494

Query: 259 S 259
           +
Sbjct: 495 T 495


>gi|150260515|ref|ZP_01917243.1| putative exported protein [Yersinia pestis CA88-4125]
 gi|149289923|gb|EDM40000.1| putative exported protein [Yersinia pestis CA88-4125]
          Length = 425

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 13/186 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQIND 144
           K L    + ++  +  D L+GL N + F   L          E  +++F D D+FK +ND
Sbjct: 238 KHLTQENDSLAYRAAHDSLTGLANRTFFEGRLSRTLNDCQPGEHTAVLFLDGDHFKDVND 297

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKII 203
           N+GH  GD V+  ++ ++  +      V RLGG+EFA       +  +   +A+ +   +
Sbjct: 298 NYGHAAGDLVLTTIAVRIRALLRETDLVARLGGDEFAVLLTPIHNLDDVLTIADHIIDSM 357

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAK---KSGRNRVVCFS 259
               I ++ G  I +++S GIA    H +    ++ RAD+A+Y AK   +SG+ R+  + 
Sbjct: 358 A-LPIILAEGCEITVSLSIGIAVYPDHAQTPEKLLQRADEAMYQAKKNFRSGK-RIFAYQ 415

Query: 260 DIENNT 265
               NT
Sbjct: 416 PNTTNT 421


>gi|294497851|ref|YP_003561551.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium QM
           B1551]
 gi|294347788|gb|ADE68117.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium QM
           B1551]
          Length = 843

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 12/193 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVF 133
           L +   + + +L  S       +  D L+GL N   F   L              ++++F
Sbjct: 394 LSHFLKTYVDDLKKSQEESEYHAYHDFLTGLPNRRYFKEQLNRRLIESKEKSIRHVAVLF 453

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEA 192
            DID FK IND  GH  GD++I  +++++     +   F+ R GG+EF       + +E 
Sbjct: 454 MDIDRFKDINDTLGHSKGDQLIQLIANRIKECLPSANSFLTRQGGDEFVILFSDFTPEEV 513

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
             +   +   ++  Q        + ++IS+G++    H   + T+I  AD A+Y +K+ G
Sbjct: 514 KGITEKIMAYVQ--QPCYIDNDEVFVSISSGLSFYPEHSTNLDTLITYADVAMYASKRQG 571

Query: 252 RNRVVCFSDIENN 264
            ++V  + D  N 
Sbjct: 572 GSKVSIYHDSLNK 584


>gi|291613781|ref|YP_003523938.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1]
 gi|291583893|gb|ADE11551.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1]
          Length = 456

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 73/167 (43%), Gaps = 7/167 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I   S  D L+ LLN           ++   + +   +I+  DID+FK IND  GH  GD
Sbjct: 290 IEVESGRDSLTRLLNRRYLPTILMRELALARNSDVPFAILLLDIDHFKNINDTHGHDSGD 349

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+   SD +        F+ R GGEE     +     +A  +A  +R+      + +  
Sbjct: 350 MVLQQASDLVTSSVRVGDFIFRYGGEELLVVLVEIGRDQALQVAETIRERFAAEPMRVGD 409

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           G  + +T+S G+A          I+  AD ALY AK SGRNR     
Sbjct: 410 GKVMQVTVSIGVAAYNGHPDYERIVKDADDALYRAKNSGRNRCELAD 456


>gi|320155462|ref|YP_004187841.1| c-di-GMP phosphodiesterase A-related protein [Vibrio vulnificus
           MO6-24/O]
 gi|319930774|gb|ADV85638.1| C-di-GMP phosphodiesterase A-related protein [Vibrio vulnificus
           MO6-24/O]
          Length = 657

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/250 (24%), Positives = 115/250 (46%), Gaps = 14/250 (5%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIF-LFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           T ++ F +F +I + +++     F L    +T    +  +     +L +     +  LG 
Sbjct: 130 TRIVLFDLFRNILLTSILLFFFYFKLSKPIITLINWVNSLQNRKNALELPPGNNNDELGR 189

Query: 85  ISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           ++ S   + +    + ++++QL+  D L+GL N S  + SL        S      + + 
Sbjct: 190 LALSFHNLWQARAAAESQLNQLAYFDTLTGLANRSLLLKSLNETLKESQSEQYPGVLFYL 249

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND+ GH +GD ++  ++ +L           R+GG+EFA      ++++AA 
Sbjct: 250 DLDRFKTINDSLGHTIGDNLMRTIAKRLEAWLQPGEIAARIGGDEFAILIPKLNKEDAAN 309

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253
            A  L  +I N          ++ T+S GI+    K      ++ +AD ALY AK +GRN
Sbjct: 310 KAKQLLTLISN--PYSIDDHQLYCTVSIGISTFADKGISSIDVLRQADTALYRAKVAGRN 367

Query: 254 RVVCFSDIEN 263
           + + +     
Sbjct: 368 KYMFYEPEMQ 377


>gi|295703224|ref|YP_003596299.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium DSM 319]
 gi|294800883|gb|ADF37949.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium DSM 319]
          Length = 843

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 86/193 (44%), Gaps = 12/193 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVF 133
           L +   + + +L  S       +  D L+GL N   F   L              ++++F
Sbjct: 394 LSHFLKTYVDDLKKSQEESEYHAYHDFLTGLPNRRYFKEELNRRLIESKEKSIRHVAVLF 453

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEA 192
            DID FK IND  GH  GD++I  +S+++         F+ R GG+EF       + +E 
Sbjct: 454 MDIDRFKDINDTLGHSKGDQLIQLISNRIKECLPPANSFLTRQGGDEFVILFSDFTPEEV 513

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
             +   +   ++  Q        + ++IS+G++    H   + T+I  AD A+Y +K+ G
Sbjct: 514 KCITEKIIAYVQ--QPCYIDNDEVFVSISSGLSFYPEHSTNLDTLITYADVAMYASKRQG 571

Query: 252 RNRVVCFSDIENN 264
            ++V  + D  N 
Sbjct: 572 GSKVSIYHDSLNQ 584


>gi|320085801|emb|CBY95577.1| Protein gmr [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 660

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSESLIRTADTAMYNAKEGGRGQFC 390

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 391 VFSPEMNQ 398


>gi|167427103|ref|ZP_02318856.1| PAS fold family [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167053896|gb|EDR63728.1| PAS fold family [Yersinia pestis biovar Mediaevalis str. K1973002]
          Length = 418

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 8/179 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDI 136
             +    +         +   +  D L+GL+N       L     +L+      + + D+
Sbjct: 236 AVVVFQDVTRARHEQRALQYQASHDMLTGLINRRRLEERLTLAINQLAHDGQHILCYVDL 295

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK +NDN GH  GD V+  ++  +         V RLGG+EFA        + AA + 
Sbjct: 296 DYFKDVNDNAGHEAGDMVLRMVAQTMQQAVRENDIVARLGGDEFAIVLFNCPSKSAAEIL 355

Query: 197 NDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +   I   Q +   G S  +T S G I      E  S  +  AD A Y AK +GRN+
Sbjct: 356 EQVVADIAAIQFHWH-GQSYVLTASLGAIPLTQQTESASQAMRLADIACYKAKHAGRNQ 413


>gi|153824779|ref|ZP_01977446.1| sensory box/ggdef family protein [Vibrio cholerae MZO-2]
 gi|149741735|gb|EDM55764.1| sensory box/ggdef family protein [Vibrio cholerae MZO-2]
          Length = 308

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 11/180 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            + + ++     ++ QL+  D L+ L N            +      + LS +  DID F
Sbjct: 127 STDITDIVELREQLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNF 186

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND FGH  GD+V+ FL+     V     F GR+GGEEF      +  + A  LA  +
Sbjct: 187 KLINDQFGHDKGDEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQI 246

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           R+          +    HI + AG++   H +  I+ I  R+DQALY AK++GRNR   +
Sbjct: 247 RQRFAEHPFFEQNE---HIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 303


>gi|331641567|ref|ZP_08342702.1| inner membrane protein YcdT [Escherichia coli H736]
 gi|331038365|gb|EGI10585.1| inner membrane protein YcdT [Escherichia coli H736]
          Length = 254

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 116/258 (44%), Gaps = 22/258 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LV 66
            + +WL        F+   + I+  +    F A +  I+ +F+    ++ +Y    I +V
Sbjct: 1   MIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVV 60

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             L++++I +            I   L ++ N    ++  D L+ + N + F + L    
Sbjct: 61  SKLTVMVIFMC----------HIFSALRVTKN----IAHRDPLTNIFNRNYFFNELTVQS 106

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +      ++  DID+FK++ND  GHPVGD+VI  + + +         + R+GGEEF 
Sbjct: 107 ASAQKTPYCVMIMDIDHFKKVNDTRGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFG 166

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYR 239
                   + A  LA  +R+ +E    +         +TIS G +  + +    + I   
Sbjct: 167 VLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRL 226

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK++GRN+VV 
Sbjct: 227 ADNALYEAKETGRNKVVV 244


>gi|289623525|ref|ZP_06456479.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289649808|ref|ZP_06481151.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330867720|gb|EGH02429.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 523

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/215 (26%), Positives = 101/215 (46%), Gaps = 14/215 (6%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILK----ELFISYNRISQLSRIDCLS 110
             P++   +  +    ++I+++ +  +L Y     L     EL I+ N +  ++  D L+
Sbjct: 287 FAPWWAYAHRSMTITGIIILALVLLGVLLYRQIQQLINAEGELNIARNELEIIAHTDSLT 346

Query: 111 GLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL- 162
            + N   F ++L     +       ++I+  DID+FKQ ND +GH  GD  +  ++  + 
Sbjct: 347 HMANRRCFDAALQQEWARASRNTATIAIILLDIDWFKQYNDTYGHLQGDDCLKQVAGLIG 406

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             +        R GGEEF      +    A  +A  +R  +E ++I  S+ P   +TIS+
Sbjct: 407 NSLDRAGDIAARYGGEEFVILLPETDLAGALKIAEKIRSSVETNRIEHSASPLGKLTISS 466

Query: 223 GIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           G+       K+  +  +  AD+ LY+AK  GRNRV
Sbjct: 467 GVVSINAAEKDGHTAALAEADRLLYLAKTKGRNRV 501


>gi|188991602|ref|YP_001903612.1| Putative sensor protein [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167733362|emb|CAP51563.1| Putative sensor protein [Xanthomonas campestris pv. campestris]
          Length = 975

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 98/220 (44%), Gaps = 13/220 (5%)

Query: 46  ANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE---LFISYNRISQ 102
           A      IG     GL      +  LV     ++ L+   +  + +E   L  +   ++ 
Sbjct: 749 AIALYVLIGAAVLAGL--WRWRHRHLVARERMLAELVAERTYQLEREKRELETARAALAL 806

Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            +  D L+GLLN S  + ++             L++V  D+D+FK +ND  GH VGD V+
Sbjct: 807 KASHDALTGLLNRSGVLEAMAEELQQCASTGHPLAVVLIDLDHFKLVNDEHGHLVGDAVL 866

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
           A +  +L         VGR GGEE      G ++Q    L   + + I  +   +     
Sbjct: 867 AQVGARLTNCLRDSDKVGRYGGEELLLLLPGMTQQSQHRL-RAIHEAIGATPYEVGIARP 925

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + +T S G+A     +   T++ RAD+ALY AK  GRNR+
Sbjct: 926 LRVTCSVGVAWFRSGDSTPTLLARADEALYRAKGQGRNRI 965


>gi|323499097|ref|ZP_08104075.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
 gi|323315730|gb|EGA68763.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
          Length = 451

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/267 (23%), Positives = 111/267 (41%), Gaps = 30/267 (11%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63
           ++  +   WL     L SF     ++ F          ++ +A   L     T     E+
Sbjct: 163 NMMSYAGAWLMVCSLLVSFIAWLILLRFRSDAESIKTAIVDLAKGKLDAKVNTQSMDSEF 222

Query: 64  ILVENLSLVIISITISLLLGYISGSILKE--------LFISYNRISQLSRIDCLSGLLNH 115
            ++   +     +TISL    ++   L+E        L     ++  LS  D L+GL N 
Sbjct: 223 KVI---AFFFNQMTISLRETTVTKHELEEEVKRQTMQLQKKQEQLIFLSEHDPLTGLYNR 279

Query: 116 SAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            AF   L            KL+++F D+D FK +ND +GH  GD ++  ++D+L      
Sbjct: 280 RAFDKCLENAIVKANRSGCKLALLFVDLDDFKAVNDTYGHDAGDVILVTVADRLNNAIRQ 339

Query: 169 PMFVGRLGGEEFAAAA-----LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
             FVGRLGG+EF              ++   +   + + I      + +   +H++ S G
Sbjct: 340 SDFVGRLGGDEFVVCLDLLNDFDILPEKTEQIMQAICEPI------LFNERELHVSASIG 393

Query: 224 IAERC-HKEPISTIIYRADQALYVAKK 249
           ++    H +    +I  AD+A+Y +K+
Sbjct: 394 VSHFPDHTKNKEVLISMADEAMYRSKQ 420


>gi|253702187|ref|YP_003023376.1| diguanylate cyclase [Geobacter sp. M21]
 gi|251777037|gb|ACT19618.1| diguanylate cyclase [Geobacter sp. M21]
          Length = 385

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/256 (25%), Positives = 109/256 (42%), Gaps = 16/256 (6%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFLFYI-GLT-PFYGL-----EYILVENLSLVII 74
           F+  T   + S+ + I +AT + +     F + GLT   Y L           ++   ++
Sbjct: 93  FTGKTSSPFISVLYLILMATSLTLGRWIAFIMTGLTIALYTLLASFQSPSFWYDIGGHLV 152

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNE 127
            I   +L+ ++   +  E   +   + +LS  D L+ L N  +F +           Y  
Sbjct: 153 KIFPFILIAHLGALLRGEAESARAEVERLSLTDDLTDLNNMRSFEALALQQEKISKRYGT 212

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
             SI   D D  KQIND  GH  G  +I + +  +           R GG+EF     G 
Sbjct: 213 PFSICMLDADNLKQINDRHGHLAGTALIKWTARIIASNIRESDVAARFGGDEFIIMFAGR 272

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYV 246
            +Q        + + + +S  +   G  +  T+SAG+A      E + +I+ +AD A+Y 
Sbjct: 273 EQQNILAAVERIVRAMNDSPFSF-EGELVQGTLSAGVASFPAAGEDLRSIVKKADLAMYR 331

Query: 247 AKKSGRNRVVCFSDIE 262
           +K+ G+NRV  F D E
Sbjct: 332 SKRLGKNRVSLFDDQE 347


>gi|149909864|ref|ZP_01898514.1| putative GGDEF family protein [Moritella sp. PE36]
 gi|149807029|gb|EDM66987.1| putative GGDEF family protein [Moritella sp. PE36]
          Length = 491

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 8/200 (4%)

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           L Y++  +L  +       +L G++  ++   L     +++  S  D L+GLLN   F++
Sbjct: 282 LTYLIKNSLVDIAFYFIAIVLAGWVLYTL--NLRTVSQKLATESHHDPLTGLLNRRGFMA 339

Query: 121 SLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
           +L S   ++  S +  D+D FK +ND +GHPVGD V+  ++  +         + RLGGE
Sbjct: 340 ALKSVERHQYYSFMIIDLDNFKHVNDTYGHPVGDDVLIRVATVIQQQIREKDILLRLGGE 399

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---IST 235
           EF      + + +   +   + + + N   + S     H+T+S G       +    I +
Sbjct: 400 EFGLLIAYNKDNKQINIFERICEAVANLP-HYSEDIEFHVTMSGGAVTTSSIDQIKLIES 458

Query: 236 IIYRADQALYVAKKSGRNRV 255
           I+ +AD  LY AK +G+NRV
Sbjct: 459 IMKQADALLYEAKIAGKNRV 478


>gi|156741489|ref|YP_001431618.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232817|gb|ABU57600.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Roseiflexus castenholzii DSM 13941]
          Length = 794

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 94/189 (49%), Gaps = 12/189 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLS-IVFFDIDYF 139
           + + +  ++ +R++ LS  D L+GL N +  +            +   L  I+  D+D F
Sbjct: 343 TDVTQRKLTEDRLAYLSSHDPLTGLANRTLLLDRLQLALERRNRHGAALCGILLLDLDRF 402

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           KQIND+ GH VGD+V+  ++ +L  +      V RLGG+EFA       S  +   +A  
Sbjct: 403 KQINDSLGHMVGDEVLIAVAGRLKHITRPGDTVARLGGDEFAVVLDSVGSLDDIWRIALR 462

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           +++ + +  I +    S+ + +S GIA    +    + ++  AD AL+ AK  GR+R+V 
Sbjct: 463 IQQAL-SHPITVQD-QSLMVGVSLGIAIDDGRTTSAAALLRDADTALHQAKARGRSRIVL 520

Query: 258 FSDIENNTC 266
           F +  +   
Sbjct: 521 FEEAMHTAA 529


>gi|59713459|ref|YP_206234.1| GGDEF domain-containing protein [Vibrio fischeri ES114]
 gi|59481707|gb|AAW87346.1| GGDEF domain protein [Vibrio fischeri ES114]
          Length = 411

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/209 (28%), Positives = 92/209 (44%), Gaps = 16/209 (7%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           G T ++ L   +++   L  I  +I           + E +    +I   +  D L+GL 
Sbjct: 209 GQTRYFQLFESVIDWGGLPAIQTSII---------DVTEKYHLERQIEYQASHDDLTGLF 259

Query: 114 NHSAFISSLGSY---NEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
           N  A    L      ++  S   +  DID FK IND FGH  GD+VI   ++        
Sbjct: 260 NRRAITEKLNQKIIDSDTCSEICLLIDIDDFKWINDQFGHASGDEVIVRFANLCKKAVDE 319

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
              VGR GGEEF       S ++A  +A  + K  E      S    I +T S GI++  
Sbjct: 320 SGIVGRWGGEEFIVFLSNHSLKQAKAIATTILKKCELEVYQFSDHHHI-VTASIGISQCQ 378

Query: 229 HKE-PISTIIYRADQALYVAKKSGRNRVV 256
                I ++I  AD+ +Y AK+ G+N++V
Sbjct: 379 TSNCNIESLIQTADKNMYQAKQQGKNQIV 407


>gi|296129272|ref|YP_003636522.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cellulomonas flavigena DSM 20109]
 gi|296021087|gb|ADG74323.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cellulomonas flavigena DSM 20109]
          Length = 1126

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/215 (24%), Positives = 97/215 (45%), Gaps = 14/215 (6%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
            +++   LS+     T + L+G  S + + E     +++   +  D L+GL N + F+  
Sbjct: 648 RWMITSALSVRDADGTATRLVG--SMTDVTERKQLEDQLRHDAHYDLLTGLPNRALFLER 705

Query: 122 LGSY--------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           L           + + +++F D+D FK +ND+ GH VGD+++  ++ +L         V 
Sbjct: 706 LNQSILRTRRHPDYRFAVIFLDLDGFKVVNDSLGHQVGDELLIEVAARLSSEVRATDTVS 765

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIAERCHK-E 231
           R GG+EFA        ++ A L + +R+ +   S   +    +  ++ +AGIA      +
Sbjct: 766 RFGGDEFALLV--DDVKDVAGLPDVVRRLLSVVSVPVVLEDRTRTVSAAAGIAVSASGYD 823

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
                +  AD A+Y AK  G   VV F    +   
Sbjct: 824 TADEYLRDADTAMYRAKAEGPGAVVLFDTAMHARA 858


>gi|86357767|ref|YP_469659.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|86281869|gb|ABC90932.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
          Length = 753

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/218 (26%), Positives = 102/218 (46%), Gaps = 24/218 (11%)

Query: 70  SLVIISITISLL-LGYISGSILK----------ELFISYNRISQLSRIDCLSGLLNHSAF 118
           SL+ + +   ++ +G+++ S  K          +L  +  R+  LS  D L+GL N   F
Sbjct: 277 SLLALCVVAPIVWVGFLTKSRQKTIEKLRLHKSKLVRARQRLEHLSLHDALTGLPNRR-F 335

Query: 119 ISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           +  + S        ++L ++  D+D FK+IND  GH  GD V+   + +L  + G     
Sbjct: 336 VDQMISQPPRPDPQDRLILIHIDLDRFKEINDTKGHAGGDMVLQTTASRLADLTGPNDVA 395

Query: 173 GRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERC 228
            R+GG+EF  A+  +  + +AA LA  +   ++ +      G    +  S G+A   E  
Sbjct: 396 ARIGGDEFVFASWSTDPEPKAAELARQIVDALQQTIF--IDGAGYVVGASVGVAWETESA 453

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
               +  ++  AD ALY AKK+GR R   F++   +  
Sbjct: 454 RDRDLGQLLLNADLALYEAKKAGRGRAAVFTEELRSAA 491


>gi|71280694|ref|YP_267379.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71146434|gb|AAZ26907.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 626

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 8/202 (3%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS--AFISS 121
           +L  N S+  I IT+  ++  +      +     ++  +L+  D L+ + N     F + 
Sbjct: 426 MLQRNKSMQFIIITLVGIILILVSIFAYKQMHHKHQFKKLAFTDELTKIANRRETYFQAE 485

Query: 122 -----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                        S++FFD DYFK +ND  GH +GD+V+  L++    V      VGR+G
Sbjct: 486 KCLTYSKKNQTPFSLIFFDADYFKLVNDELGHNIGDQVLICLANIASNVIRKGDVVGRVG 545

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236
           GEEF      +    A  +AN L   IE  + +I S   +  T+SAG+     +  +S +
Sbjct: 546 GEEFIILLPDTDIDTALSIANRLLTNIEQYEWSIISN-DLTQTVSAGVVSYQGENDLSEL 604

Query: 237 IYRADQALYVAKKSGRNRVVCF 258
           +++AD+ALY AK +GRN +  F
Sbjct: 605 LFKADKALYEAKAAGRNHIKTF 626


>gi|66047994|ref|YP_237835.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63258701|gb|AAY39797.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|330970974|gb|EGH71040.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 897

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + +  ++  RI +L+  D L+ L N  AFI +L        +  +S++  DID FK+IN
Sbjct: 454 DITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDERFARDTDTPMSLLLVDIDNFKRIN 513

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++  L+ +L         + R    EFA     + ++     A  +   +
Sbjct: 514 DSLGHQTGDKLLISLARRLRNTLSPSDILARFASNEFAVLIDNTDQEAGHATATQVLATL 573

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I +T S G+A    H     T++  A  AL+ AK +G+++V  F++  
Sbjct: 574 DKPMF--VDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFTEAL 631

Query: 263 NNTC 266
           N   
Sbjct: 632 NAEA 635


>gi|27382451|ref|NP_773980.1| hypothetical protein bll7340 [Bradyrhizobium japonicum USDA 110]
 gi|27355622|dbj|BAC52605.1| bll7340 [Bradyrhizobium japonicum USDA 110]
          Length = 424

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/200 (26%), Positives = 87/200 (43%), Gaps = 12/200 (6%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------G 123
           +V+  + +S+ L +  G +L  +      ++ L+ +D L+G+ N    +  L        
Sbjct: 210 MVLGLLFLSMTLNF--GFLLMAMDRLRGEVADLALLDDLTGVANRRHLLQRLSEECARSE 267

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
              E  S++  D+D FK IND  GH  GD  +   +            + R GG+EF   
Sbjct: 268 RSGEPFSLLVIDLDGFKTINDTHGHAAGDACLQHFTLMAQTRLRPGDMLARTGGDEFCVV 327

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRAD 241
              SS +EAA +A  + ++         +G  I I IS G A+      +    +I  AD
Sbjct: 328 LPSSSLREAAAIARRVLEVCRR-DAAACNGNDIPIAISIGAAQWDPGIGQFPDRLIAHAD 386

Query: 242 QALYVAKKSGRNRVVCFSDI 261
            ALY AKK+G+N    +   
Sbjct: 387 HALYAAKKNGKNDFAVYDPA 406


>gi|114049157|ref|YP_739707.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113890599|gb|ABI44650.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 608

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 107/249 (42%), Gaps = 15/249 (6%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG-LEYILVENLSLVIISITISLLL 82
           P  +    S+      A  I  A+  L  + L+     L + + + + L   +  ++ LL
Sbjct: 355 PEEYQAMCSVGICSIAAYAIKNADELLGLLSLSMISRPLNWSVQKKVMLTQFAAALNELL 414

Query: 83  -----GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFF 134
                     S+ + L     ++  ++  D L+GL N   F   + +L      + ++  
Sbjct: 415 LREEKERQMLSLQQALVSVNTQLRVMAETDELTGLSNRRPFTQTLEALLQQRAPIGLLML 474

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVV--VFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           DIDYFK  ND +GH  GD+ +  ++  L+   +      + R+GGEEFA      +  + 
Sbjct: 475 DIDYFKSYNDTYGHLEGDEALRRVAQALMQSGILPLDSLLARIGGEEFAIILEHITPIQL 534

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAK 248
             +AN L   +    I  SS P   IT+S G         +K  +S ++ RAD  LY AK
Sbjct: 535 EAIANQLCYQVAALDIPHSSSPKGKITLSIGGVYLPLATINKLTLSEVLRRADICLYRAK 594

Query: 249 KSGRNRVVC 257
             GRN VV 
Sbjct: 595 DQGRNTVVI 603


>gi|186683815|ref|YP_001867011.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nostoc
           punctiforme PCC 73102]
 gi|186466267|gb|ACC82068.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nostoc
           punctiforme PCC 73102]
          Length = 824

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 81/183 (44%), Gaps = 12/183 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQ 141
           +  L ++  ++   +  D L+ L N + F+  L           +   +++F D+D FK 
Sbjct: 376 ITALKLAEAQLIHDAFHDILTSLPNRALFMERLERALMLAKRRADYTFAVLFLDLDRFKV 435

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND+ GH +GD+++  L+ +L         V RLGG+EF        +  +A  +   + 
Sbjct: 436 VNDSLGHMIGDQLLTALARRLENCVRAGDTVARLGGDEFTILLDDINNINDAIGVVERIH 495

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFS 259
           + + ++     SG  +  T+S GI        +   I+  AD A+Y AK  G+ R   F 
Sbjct: 496 EALTSA--FTLSGYEVFTTVSIGIVVSKGSYNLPEQILRDADIAMYRAKALGKARHEIFD 553

Query: 260 DIE 262
              
Sbjct: 554 STM 556


>gi|325272237|ref|ZP_08138656.1| diguanylate cyclase [Pseudomonas sp. TJI-51]
 gi|324102626|gb|EGC00054.1| diguanylate cyclase [Pseudomonas sp. TJI-51]
          Length = 387

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/202 (29%), Positives = 97/202 (48%), Gaps = 13/202 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           L +++S+ I ++T+ +   Y  G +L     S +R+  L+  D L+G LN  A +    S
Sbjct: 183 LKQSISVAIGTVTVMM---YSIGLVLMAKERSESRLQHLALHDVLTGTLNRRAILERFAS 239

Query: 125 YNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
             ++       L++   DID+FK+IND +GH  GD+V+     QL         +GR GG
Sbjct: 240 ELDRARGQQASLAVAMIDIDHFKRINDLYGHLAGDEVLCHCVRQLQQRLRQGDSLGRYGG 299

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPIST 235
           EEF      +    A      LR+ I  S     +G  I +  S G+       K+  ++
Sbjct: 300 EEFLLLLPATDRAGALTAVQGLREAIARSPARF-AGDHIELRFSVGLWCGVPGSKDSTAS 358

Query: 236 IIYRADQALYVAKKSGRNRVVC 257
           ++ +AD ALY AK +GR+ V  
Sbjct: 359 LLAQADAALYQAKAAGRDTVHM 380


>gi|309779542|ref|ZP_07674303.1| GGDEF domain-containing protein [Ralstonia sp. 5_7_47FAA]
 gi|308921783|gb|EFP67419.1| GGDEF domain-containing protein [Ralstonia sp. 5_7_47FAA]
          Length = 271

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/269 (23%), Positives = 112/269 (41%), Gaps = 19/269 (7%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIF------IATVIFIAN-IFLFYIGLTPFYG 60
              I   H+  L+   P  +++  +   +        IA  +  A  I    I   P   
Sbjct: 1   MAIIAFGHQAGLQWVLPAFYLMPLATSPAWLTRRDFCIAMALCTAGPIVALLIAPEPASA 60

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           + +  +  +  + I I  + ++ +     +   F +   ++  +  D L+G+L    F  
Sbjct: 61  IRHGWLGLVLYLPICIAAAAVIHHYLLRAMARHFAAERSLADRANTDHLTGMLARQRFFE 120

Query: 121 -------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                      + E L  ++ D+D+FK IND +GH  GD+ +  LSD L  V       G
Sbjct: 121 LGSFAVERAQHHAEPLCALYLDVDHFKSINDTWGHAAGDEALVALSDALADVLRPADLFG 180

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           RLGG+EFA    G     A  +   L+  +  +Q  +       +T+S G A     + +
Sbjct: 181 RLGGDEFAVLLPGCGLTGALAVVERLKTAVAGTQTPVG-----PLTVSVGAAPLRPGQDL 235

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIE 262
           + ++  AD  L  AK+ GRNRV   +D++
Sbjct: 236 ARLLADADLGLMEAKRQGRNRVCVPTDVQ 264


>gi|293610320|ref|ZP_06692621.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827552|gb|EFF85916.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 627

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 66/265 (24%), Positives = 127/265 (47%), Gaps = 16/265 (6%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIG--LTPFYGLEYILV 66
           L+  L ++         T  I FS+  ++ I  + + A I        ++ +     +L+
Sbjct: 157 LAFLLAYKLKDTERYRLTLKIAFSVMMTLSIMGMHYTALIATNITDKFISQYQAEHDLLL 216

Query: 67  ENLSLVI-ISITISLLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
             + LV  + +  S ++  +   + +   EL  +   ++ LS  D L+ L N    +   
Sbjct: 217 FTIILVTCLVLVASFIVAMLEQRLTQQNLELRKANKELANLSIQDNLTKLPNRLYLVDYA 276

Query: 123 G------SY-NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                   Y ++K++ ++ D+D FK +ND FGH VGD+++  ++++L         + R+
Sbjct: 277 EVLLSDHRYKDQKIAFLYIDLDRFKSVNDAFGHHVGDQLLIQMANRLHWQLNEKCKLLRI 336

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPIS 234
           GG+EF   A  ++  EA ILA  + ++I+ S     SG  I+I+ S G+A    H + + 
Sbjct: 337 GGDEFLLIAENTNADEAVILAEKVLQLIQES--YQISGKEINISASLGVALFPEHGQNVQ 394

Query: 235 TIIYRADQALYVAKKSGRNRVVCFS 259
            ++  AD A+ ++K+ GRN    FS
Sbjct: 395 DLLMNADAAMLMSKEQGRNTYTIFS 419


>gi|196043723|ref|ZP_03110961.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108]
 gi|225864514|ref|YP_002749892.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102]
 gi|196026032|gb|EDX64701.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108]
 gi|225790408|gb|ACO30625.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102]
          Length = 828

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 94/200 (47%), Gaps = 10/200 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           +++V I I       Y+    +  +    ++I+ L+  D ++ + N   F   L    E+
Sbjct: 366 VTIVPIMIEGQTFGSYVMVKDITRMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIER 425

Query: 129 -------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                    +++ D++ FK IND  GH +GD V+  ++ +        + + R+GG+EFA
Sbjct: 426 AQKTQGEFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRAYLSPSIPLARIGGDEFA 485

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRA 240
                 +EQ+   L  +L +I    +  + +  S ++++S GIA         +T++  A
Sbjct: 486 IIVHNHTEQQQLDLCENLFRI--TKKPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHA 543

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D A+Y AK+ G N V  + +
Sbjct: 544 DIAMYSAKEKGNNAVCMYDE 563


>gi|188997503|ref|YP_001931754.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932570|gb|ACD67200.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 638

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 99/197 (50%), Gaps = 7/197 (3%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           +S++   I + +  G +  +++  L +  +   Q S  D L+GL N +     +     K
Sbjct: 195 ISVLKTFILLFIFAGLVIINVIIFLALKASYYKQRSFTDNLTGLYNRNYLQHIMD---FK 251

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
             I   DIDYFK+IND +GH +GDKV+  +++ +  +        R GGEEF   A    
Sbjct: 252 YIIALIDIDYFKKINDTYGHAIGDKVLKSVANTMKKLTREEDIFIRYGGEEFLLLAKVDR 311

Query: 189 EQEAAILA---NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQAL 244
           +Q+  ++      +R  IE  +I I+ G  I  TIS G+    +K+  I+  I +AD AL
Sbjct: 312 KQDIQVMLNLFERIRSNIEKLKIPITDGDYIKTTISIGVYLNTNKDKNINEAIKKADVAL 371

Query: 245 YVAKKSGRNRVVCFSDI 261
           Y AK  GRNR+  + + 
Sbjct: 372 YKAKSKGRNRIEIYDEE 388


>gi|149376979|ref|ZP_01894733.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter algicola DG893]
 gi|149358756|gb|EDM47226.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Marinobacter algicola DG893]
          Length = 558

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 11/196 (5%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
            NLSL +  +   L+        ++E         + +  D L+ L N  A+   L    
Sbjct: 360 RNLSLQLELMQEKLVTMEAQSEQVREKLREE---REKALTDVLTQLPNREAWQERLSFEY 416

Query: 123 ---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                Y   LS+   DID+FK++ND++GH  GD+V+  ++  L        F+ R GGEE
Sbjct: 417 QRWQRYRHSLSVCVLDIDFFKRVNDSYGHKAGDRVLQLVARALRERLRATDFIARFGGEE 476

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F      ++   A  + + +R  I     +   G  + +T SAG+AE    +    +  R
Sbjct: 477 FVILLPETNVDNARSVLDSMRGHIAELPFHFR-GEPVSVTFSAGLAEFDGDDDEDDVFDR 535

Query: 240 ADQALYVAKKSGRNRV 255
           AD+ALY+AK SGR++V
Sbjct: 536 ADKALYLAKDSGRDQV 551


>gi|187920356|ref|YP_001889387.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
 gi|187718794|gb|ACD20017.1| diguanylate cyclase [Burkholderia phytofirmans PsJN]
          Length = 393

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 65/250 (26%), Positives = 116/250 (46%), Gaps = 16/250 (6%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV 72
           L     ++S       +  S    +F A   F+    L ++G    YG   + V +   +
Sbjct: 138 LLRSDGMKSLKSRHIAVMVSGGHGLFYAARAFV----LPWLGT--LYGQGLLSVASKITM 191

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------N 126
              +  S++L     ++++E   ++ R+ Q S+ D L+GL N   F             +
Sbjct: 192 YEGVLYSVILPMTLLTLIRE--ETHGRLLQESQTDYLTGLGNRRWFFEEGARVMREAGVS 249

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             +S++ FD+D+FK+IND +GH  GD V+   +     + G    + R+GGEEFAA   G
Sbjct: 250 RPVSLLAFDLDHFKRINDRYGHETGDAVLKSFAAITRSLTGPEAMLARIGGEEFAALLPG 309

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQAL 244
                A  + + + +    + ++  +   I  T+S G+A++   E   ++ ++  ADQAL
Sbjct: 310 HDSLRAEEVGDAIVRRFAGTVLHRINDVDIRATVSVGLAQQSASEAPTLADLLASADQAL 369

Query: 245 YVAKKSGRNR 254
           Y AK  G NR
Sbjct: 370 YRAKSLGGNR 379


>gi|77919908|ref|YP_357723.1| sensory box/GGDEF family protein [Pelobacter carbinolicus DSM 2380]
 gi|77545991|gb|ABA89553.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Pelobacter carbinolicus DSM 2380]
          Length = 874

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 18/194 (9%)

Query: 81  LLGYISGSILKE-------LFISYNRISQLSRIDCLSGLLNHSAFISSLG----SYNEK- 128
           +L ++    + E       L     R++ L+  D L+GL N    I  L       N++ 
Sbjct: 406 VLFFVLVRDITERKAADTMLRKQKARLNYLAYHDVLTGLPNRLKAIELLQTYIGRANQRD 465

Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             ++++ FD+D FK +N++ GH  GD+++  ++ ++  +      V R GG+EF      
Sbjct: 466 TMVAVLIFDLDRFKNLNESLGHETGDEILMEVARRIQEMLRDTDVVARFGGDEFLVLLEH 525

Query: 187 -SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
            +       +A  L + I   Q         ++T S GI+    H E   TI+  AD A+
Sbjct: 526 VADSTGVKHVAEKLLEAIA--QPLRIGEQQFYLTGSIGISLYPKHGENAQTILKAADSAM 583

Query: 245 YVAKKSGRNRVVCF 258
           Y AK+ GRN    F
Sbjct: 584 YFAKEQGRNTYRFF 597


>gi|24374845|ref|NP_718888.1| GGDEF family protein [Shewanella oneidensis MR-1]
 gi|24349537|gb|AAN56332.1|AE015771_2 GGDEF family protein [Shewanella oneidensis MR-1]
          Length = 574

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 11/183 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L+ L     ++  ++  D L+G  N     + +         +N  LSIV FD+D FK+ 
Sbjct: 391 LETLKTYAAQVKTMAETDGLTGCYNRRYLDNQILKELSYANDHNMPLSIVMFDLDNFKEF 450

Query: 143 NDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GH  GD+ +  + +    +       + R GGEEF      S  ++A  +A  LR+
Sbjct: 451 NDQYGHVNGDQCLRQIVNAAKSILQRPTDILARYGGEEFMLLLPSSHIEDAYKIAERLRE 510

Query: 202 -IIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCF 258
            +I+   I+  S  S  +TIS G+A     E      +I   D+ALY AK +GRNR   F
Sbjct: 511 TVIDLHIIHQGSSHSGIVTISLGVACWQPPESFDVNKLISHVDEALYRAKLAGRNRTEVF 570

Query: 259 SDI 261
            D 
Sbjct: 571 IDA 573


>gi|330807737|ref|YP_004352199.1| Response regulator, PleD family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375845|gb|AEA67195.1| putative Response regulator, PleD family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 333

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/212 (28%), Positives = 97/212 (45%), Gaps = 22/212 (10%)

Query: 65  LVENLSLV--IISITISLLLGYISGSILKELFISYNRI-------SQLSRIDCLSGLLNH 115
           L +N+ LV  I   + S ++     +  + L +S  ++        +L   D L+GL N 
Sbjct: 120 LPDNIELVARIRYHSRSYMMLLQRDAAYRALRVSQQQLLDTNLVLQRLMNSDGLTGLSNR 179

Query: 116 SAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFG 167
             F   L            +LS++  D+DYFK  NDNFGH  GD+ +  ++  +      
Sbjct: 180 RHFDEYLELEWRRAMRDQSQLSLLMIDVDYFKAYNDNFGHLEGDEALRKVATAIREACSR 239

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI--SSGPSIHITISAGIA 225
                 R GGEEFA    G+S   A ++A  LR+ +   +I      G   ++T+S G++
Sbjct: 240 PSDLPARYGGEEFALVLPGTSPGGARLMAEKLRQGVVALKIPHTTPDGGE-NLTVSIGVS 298

Query: 226 E--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
                       +I  AD+ LY+AK +GRNRV
Sbjct: 299 TFIPQQGSDCRQLISAADKGLYLAKHNGRNRV 330


>gi|315182011|gb|ADT88924.1| response regulator receiver protein [Vibrio furnissii NCTC 11218]
          Length = 315

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 77/176 (43%), Gaps = 11/176 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145
           L    + +  L+ +D L+G+ +   F   L           E L ++  DID+FKQ ND 
Sbjct: 134 LKHQSDLLRSLAYVDGLTGVSSRRHFDQYLDTQLGHAFRKQESLGVLLIDIDFFKQYNDR 193

Query: 146 FGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD  +  ++  L      +   V R GGEEF      + E   A +A  ++  +E
Sbjct: 194 YGHIAGDDALRQVAQNLKQSSLRSTDLVARYGGEEFVMVLPDTDEAGLAHIAQRIKHQLE 253

Query: 205 NSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVC 257
              I  +  P+  +T+SAG A     E       ++  AD  LY AK  GRN+   
Sbjct: 254 QQAIAHTGSPTALLTVSAGGAIYWPGEQPGSTEAMLMLADTMLYKAKAQGRNQSCV 309


>gi|260771802|ref|ZP_05880720.1| C-di-GMP phosphodiesterase A-related protein [Vibrio metschnikovii
           CIP 69.14]
 gi|260613094|gb|EEX38295.1| C-di-GMP phosphodiesterase A-related protein [Vibrio metschnikovii
           CIP 69.14]
          Length = 673

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/247 (23%), Positives = 103/247 (41%), Gaps = 18/247 (7%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL--------LGY 84
           I F +   T++ +  +  FY  L+         V +L      I  +LL        L  
Sbjct: 162 ILFDLLRNTLLTVILLAFFYRKLSRPITTLIDWVRSLPTAQSPIPTNLLRPKDELSELAS 221

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
              S+ ++   +  +++ L+  D L+GL N    + +L              ++ + D+D
Sbjct: 222 SFHSLWQDKEKAQAKLNHLAYYDGLTGLANRGLLLQTLTQAIEYAHQRQHTGALFYLDLD 281

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK IND+ GH +GD +I  ++ +L           R+GG+EFA        Q+ + +A 
Sbjct: 282 RFKTINDSLGHTIGDTLIQSIAHRLQAWANHSYTAARVGGDEFAIIIPSLPYQQISSIAQ 341

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            L  ++ N   +   G  ++ T S GIA           +  +AD ALY AK  GRN+ +
Sbjct: 342 QLLALLAN--PHSIDGHQLYCTASIGIATFPSEGVSSLDVFRQADTALYRAKTCGRNKYL 399

Query: 257 CFSDIEN 263
            +     
Sbjct: 400 FYEPEMQ 406


>gi|163761146|ref|ZP_02168223.1| two component response regulator [Hoeflea phototrophica DFL-43]
 gi|162281697|gb|EDQ31991.1| two component response regulator [Hoeflea phototrophica DFL-43]
          Length = 431

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 10/171 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+   +  D L+ L N   F  ++        +   + ++   DID+FK++ND +GH  G
Sbjct: 258 RLRHHAERDQLTNLPNRRYFFEAVSKLMCEDQAKGLQSAVALLDIDFFKKVNDTYGHEAG 317

Query: 152 DKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D+ +  ++  L   +  TP    RLGGEEFA    G   Q A      +R  IE+++I +
Sbjct: 318 DETLRAIARSLKTALGRTPHMAARLGGEEFAIYLRGLEGQGAHDFCEAIRSSIEDTRIEL 377

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            +G  I +T S G+ +    EP+   ++ ADQ LY+AK  GRNRV  FS++
Sbjct: 378 RNGKIIAVTTSVGLVDIHANEPVDNQLHAADQLLYMAKAGGRNRV--FSEL 426


>gi|34498916|ref|NP_903131.1| hypothetical protein CV_3461 [Chromobacterium violaceum ATCC 12472]
 gi|34332886|gb|AAQ61122.2| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 420

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 80/179 (44%), Gaps = 8/179 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQI 142
           ++EL  +    S   + D L+G  N                     LSI   D+D FKQ+
Sbjct: 241 IRELETALEAASAKVKEDQLTGAYNRRGLAEYFQREIGRAERTAAPLSIALIDVDNFKQL 300

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD  + +L D +         V R GGEEF      + E EA      L++ 
Sbjct: 301 NDRYGHLAGDDALKYLVDTIKHSLRPADIVARFGGEEFVILMPDTPETEAVQTVQRLQRE 360

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +      +++   + IT SAG+A     E  S ++ RAD A+Y AK +G+NRV    D+
Sbjct: 361 L-TKTFFLANNDKLLITFSAGVARWHLGEQESDVLERADHAMYQAKINGKNRVCSAEDM 418


>gi|51595964|ref|YP_070155.1| hypothetical protein YPTB1628 [Yersinia pseudotuberculosis IP
           32953]
 gi|51589246|emb|CAH20867.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
          Length = 693

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 8/179 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDI 136
             +    +         +   +  D L+GL+N       L     +L+      + + D+
Sbjct: 511 AVVVFQDVTRARHEQRALQYQASHDMLTGLINRRRLEERLTLAINQLAHDGQHILCYVDL 570

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK +NDN GH  GD V+  ++  +         V RLGG+EFA        + AA + 
Sbjct: 571 DYFKDVNDNAGHEAGDMVLRMVAQTMQQAVRENDIVARLGGDEFAIVLFNCPSKSAAEIL 630

Query: 197 NDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +   I   Q +   G S  +T S G I      E  S  +  AD A Y AK +GRN+
Sbjct: 631 EQVVADIAAIQFHWH-GQSYVLTASLGAIPLTQQTESASQAMRLADIACYKAKHAGRNQ 688


>gi|16264943|ref|NP_437735.1| hypothetical protein SM_b20900 [Sinorhizobium meliloti 1021]
 gi|15141082|emb|CAC49595.1| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021]
          Length = 644

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 12/191 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDID 137
           I    L     +   I  L+  D L+ L N S+F   L         +++ L+++  D+D
Sbjct: 271 IFVRDLTARKDAERTIEHLAHHDALTDLSNRSSFDRRLRQALAAAVHHDDALAVLCLDLD 330

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LA 196
            FK +ND FGH  GD+++  ++D L    G    + RLGG+EFA    G+++ EAA  LA
Sbjct: 331 RFKAVNDIFGHGEGDRILRKVADILRAGAGEADTIARLGGDEFAIVQTGAAQPEAARLLA 390

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           + + K+             + + +S G+A           +   AD ALY AK++G+  +
Sbjct: 391 DRILKLFSEEMDTRRD--PMAVGVSIGVAICPGDGTTAERLYGNADTALYRAKQTGKG-I 447

Query: 256 VCFSDIENNTC 266
            CF D E +  
Sbjct: 448 ACFFDAEMDAA 458


>gi|146280275|ref|YP_001170431.1| diguanylate phosphodiesterase [Rhodobacter sphaeroides ATCC 17025]
 gi|145558516|gb|ABP73126.1| diguanylate phosphodiesterase [Rhodobacter sphaeroides ATCC 17025]
          Length = 936

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/200 (30%), Positives = 92/200 (46%), Gaps = 13/200 (6%)

Query: 66  VENLSLVIISITISL---LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           V   SL   SI ++    L   I+  + +    +  R+      D L+GL N S     L
Sbjct: 466 VTGRSLPWTSIELACAHDLGEAITAEMAQRTRAALARLRH---YDPLTGLANRSFLQECL 522

Query: 123 GSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
            +        ++++F D+D FK +ND+ GH VGD ++  ++  LV        V RLGG+
Sbjct: 523 ANATLAGGPDVALLFIDLDRFKAVNDSMGHGVGDGLLIEVAHSLVASVRPEDLVVRLGGD 582

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EF     G        LA  LR++++  Q    +G   HI+ S GIA       +  ++ 
Sbjct: 583 EFVVLCHGLDRAAVTGLAERLRQVLD--QPFEVTGRKCHISASIGIAMSDSIGELD-LVR 639

Query: 239 RADQALYVAKKSGRNRVVCF 258
            AD A+Y AKK+G NR   F
Sbjct: 640 AADIAMYAAKKNGGNRGELF 659


>gi|283834350|ref|ZP_06354091.1| diguanylate cyclase YddV [Citrobacter youngae ATCC 29220]
 gi|291069884|gb|EFE07993.1| diguanylate cyclase YddV [Citrobacter youngae ATCC 29220]
          Length = 462

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/201 (29%), Positives = 99/201 (49%), Gaps = 13/201 (6%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------I 119
           E +SL+     +S  + ++  S+   L    N        D L+ LLN           I
Sbjct: 268 ERMSLLQDVRQLSAKIHFLLASMFDALVKQEN------GKDSLTQLLNRRFIPTIMRREI 321

Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
           S      +  ++   DIDYFKQIND++GH  GD  +  ++  +     +  +V R GGEE
Sbjct: 322 SLALHTRKPFTLAMLDIDYFKQINDSYGHNTGDMTLKNVAAVIYDHIRSSDYVFRYGGEE 381

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239
           F    + S   +A+I+   LR  I + ++  S+  +  +T+S GIAE  +      ++ +
Sbjct: 382 FMILLVESDRSQASIILETLRMKIADLRMAASATEAFSVTVSIGIAEYDYHPDYKQLVDK 441

Query: 240 ADQALYVAKKSGRNRVVCFSD 260
           AD+ALY+AK +GR+RV  F +
Sbjct: 442 ADRALYLAKSNGRDRVEIFQE 462


>gi|224373505|ref|YP_002607877.1| diguanylate cyclase [Nautilia profundicola AmH]
 gi|223589658|gb|ACM93394.1| diguanylate cyclase [Nautilia profundicola AmH]
          Length = 512

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 97/207 (46%), Gaps = 21/207 (10%)

Query: 71  LVIISITISLLLGYISGSILKE-------------LFISYNRISQLSRIDCLSGLLNHSA 117
           L+ I+ +I   L + S  + KE             L     ++S+  + D L+ + N  A
Sbjct: 302 LLTIATSIDKELNHFSEEMRKEDEEIEKLRQKVHFLEGKLKQLSKEVKTDFLTDIANKKA 361

Query: 118 FISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
            I  L         Y    S+VFFDID+FK IND +GH  GD ++  L            
Sbjct: 362 VIDELKKQESIYNRYGTNYSVVFFDIDHFKNINDTYGHDAGDVILKSLGLLFKRYARDID 421

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
            +GR GGEEF A    + ++ A   A  LR+IIE ++    +   I +T+S G+A R   
Sbjct: 422 MIGRFGGEEFVAILPNTDKEGAYKFAEKLRQIIEKTKFMYKN-TRIDVTVSGGVASRNET 480

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVC 257
                 +  AD+ LY+AKK+GRN+V  
Sbjct: 481 NSSDETLKLADKRLYLAKKTGRNKVCA 507


>gi|213586095|ref|ZP_03367921.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 565

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 87/185 (47%), Gaps = 8/185 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 121 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 180

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S  L+        + RLGG+EF      +S+     +A+ + 
Sbjct: 181 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRIL 240

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +   Q        ++   + GI+    H +   ++I  AD A+Y AK+ GR +   FS
Sbjct: 241 TRLR--QPFRIGLIEVYTGCAIGISLAPRHGQDSESLIRTADTAMYNAKEGGRGQFCVFS 298

Query: 260 DIENN 264
              N 
Sbjct: 299 PEMNQ 303


>gi|206576162|ref|YP_002238199.1| diguanylate cyclase (GGDEF) domain protein [Klebsiella pneumoniae
           342]
 gi|206565220|gb|ACI06996.1| diguanylate cyclase (GGDEF) domain protein [Klebsiella pneumoniae
           342]
          Length = 453

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 76/258 (29%), Positives = 115/258 (44%), Gaps = 17/258 (6%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE 67
            ++IW      L S S    + +FS  F  F +  ++     +   G       +    E
Sbjct: 201 LMAIWFITLILLISLSKLRNIFWFSGAF--FCSAYLYTLFQLVSTAGDLDQTWYQARFFE 258

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
            L     ++ + L+L      + +E    Y    Q S  D L+ L N S F  +L     
Sbjct: 259 TLC----TLFLILVLLIDVFMLYRESNHKYVHSYQNSIRDPLTRLYNRSFFYDTLNQQLA 314

Query: 126 ----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                  LS++  D+D+FK+INDN+GH  GDKVI F +  L           R+GGEEFA
Sbjct: 315 KVNPQHPLSVIISDLDHFKRINDNYGHVAGDKVIQFAASVLENHSRVDDAAARIGGEEFA 374

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRA 240
              + ++E++A  +A  +R  +   Q  +       +TIS G+   R       T + RA
Sbjct: 375 LLLVNTAEKDALAIAERIRLAVNAEQHPLPE----RMTISMGLYTTRDRSVSAETCVERA 430

Query: 241 DQALYVAKKSGRNRVVCF 258
           D A+Y AK SGRNRVV +
Sbjct: 431 DAAMYEAKNSGRNRVVVW 448


>gi|157962874|ref|YP_001502908.1| diguanylate cyclase/phosphodiesterase [Shewanella pealeana ATCC
           700345]
 gi|157847874|gb|ABV88373.1| diguanylate cyclase/phosphodiesterase [Shewanella pealeana ATCC
           700345]
          Length = 679

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139
             IL +   +  ++ +++  D L+ L N +  +           +   + S++F D+D F
Sbjct: 232 NQILIQFDTTQTKLRKMATRDPLTELPNRTLLLETIAVTIQRAKTKQRRFSLLFIDLDRF 291

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K +ND+ GH VGD+ +  ++  L +  G    V RLGG+EF   A G  S  +A  L + 
Sbjct: 292 KNVNDSLGHEVGDQFLIRVARNLELTVGQIGTVARLGGDEFVVLADGLDSPTKAVELVDK 351

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           L  +++ +     +  ++H   S GIA           +I  AD A+Y AK +G N+   
Sbjct: 352 L--LVQLNTPMQLNEHTVHPAASIGIAIYPDDGLRAEDLIRHADIAMYSAKAAGSNQWAF 409

Query: 258 FSDIENNTC 266
           F        
Sbjct: 410 FKPQMTERA 418


>gi|304411388|ref|ZP_07393002.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|307305290|ref|ZP_07585038.1| diguanylate cyclase [Shewanella baltica BA175]
 gi|304350243|gb|EFM14647.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|306911593|gb|EFN42018.1| diguanylate cyclase [Shewanella baltica BA175]
          Length = 341

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 12/209 (5%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKE------LFISYNRISQLSRIDCLSGL 112
           + +E +L    SLV  S  I     + +G + K       L     +  +    D L+G 
Sbjct: 128 FSVEQVLDLVRSLVKESDNIRSSTEFFTGQLQKAQTEIDALKKKLEQTEKDVLYDALTGC 187

Query: 113 LNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N  AF S     L        ++  DID+FK  ND +GH +GD+V+  ++ +L      
Sbjct: 188 FNRRAFDSDFAGMLAQAPLGTCLILADIDHFKVFNDTYGHQLGDQVLRAVAKRLQESCRD 247

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITISAGIAE 226
            + + R GGEEF      S  + A  LA  +R+ +E   + +      I +I+ S G+A+
Sbjct: 248 GVKLYRFGGEEFVIIVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDERINNISASFGVAQ 307

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRV 255
              K+    +I  AD+ LY AK+ GRNRV
Sbjct: 308 WQEKQTGMQLIEAADKLLYDAKRLGRNRV 336


>gi|296535895|ref|ZP_06898050.1| GGDEF domain protein [Roseomonas cervicalis ATCC 49957]
 gi|296263774|gb|EFH10244.1| GGDEF domain protein [Roseomonas cervicalis ATCC 49957]
          Length = 481

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 11/170 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            R   L+  D L+GL N   F   L           + L+++  DID+FK  ND+ GH  
Sbjct: 311 QRYHALAETDGLTGLGNRRKFDRLLRLEWERQQRLGQPLALLMLDIDHFKAFNDSQGHLA 370

Query: 151 GDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           GD V+  L+  +            R GGEEFA    G   +EA  LA  ++  +    + 
Sbjct: 371 GDAVLRSLAGCIRSCIRAETDLAARYGGEEFAILLPG-GAEEAKHLAERIQDTLYRLNLP 429

Query: 210 ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +  S  I++S G A      +   + ++  AD ALY AK++GR++   
Sbjct: 430 HPAARSGRISVSLGAAAMVPPEQGQPAMLVQAADAALYRAKQAGRDQAAY 479


>gi|254505185|ref|ZP_05117336.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
 gi|222441256|gb|EEE47935.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
          Length = 298

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 14/178 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L      ++ L++ D L+GLLN           +S     +  LS++  DID+FK IN
Sbjct: 125 EKLQDQAESLANLAKRDALTGLLNRRELSEQFAMLLSQANRADRALSVLLIDIDHFKTIN 184

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD V+      L     T     R GGEEF      +   +AA  A+ + + +
Sbjct: 185 DEYGHQRGDTVLREFGGLLQKSCRTGDVAARYGGEEFVVLLPDTGITDAAKRADRIHEKL 244

Query: 204 ENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              ++       +  ++S GI+E           +I +AD+ALY+AK +GR       
Sbjct: 245 SGIEVG-----GLRFSVSIGISEKKAPVATDAENMIKKADEALYLAKNAGRGCTRLAD 297


>gi|220933358|ref|YP_002512257.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994668|gb|ACL71270.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 808

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 9/173 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDN 145
           L+    ++S  +R D L+GL+N   F              +   ++ + D+D FK +ND 
Sbjct: 369 LWDMARQLSHQARHDALTGLINRREFEDRVREALESARRSSRSHALCYIDLDQFKVVNDT 428

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD+++  L+  L         + RLGG+EF           A  + + L   +  
Sbjct: 429 CGHVAGDELLRQLAAALPRHIRDTDTLARLGGDEFGLLLENCPLDRALSICHQLLAEVAE 488

Query: 206 SQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +  +  G    + +S G +A       +S ++  AD A YVAK+ GRNRV  
Sbjct: 489 LRF-MWQGRRFDVGMSIGLVAIDGASASLSEVLSEADSACYVAKEQGRNRVYV 540


>gi|163802314|ref|ZP_02196208.1| c-di-GMP phosphodiesterase A-related protein [Vibrio sp. AND4]
 gi|159173843|gb|EDP58657.1| c-di-GMP phosphodiesterase A-related protein [Vibrio sp. AND4]
          Length = 679

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 77/168 (45%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+ L N   F   L         L + + DID FK IND+ GH +GDKVI  +S 
Sbjct: 253 AHIDSLTKLYNRFGFTKRLEQLLKSQTPLLVFYLDIDNFKNINDSLGHHIGDKVIQEVSS 312

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           +L         +G LGG+EF        + + A ILA  +  +I  +Q       S  + 
Sbjct: 313 RLTRSLPNHAIIGHLGGDEFGIILPEPENSRMAEILAERIISLI--NQPFDLHHFSKRLA 370

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +      +    ++  AD A+Y AK  GRNR++ F+D  N   
Sbjct: 371 CSIGSVRYPEDGQDARILLQNADTAMYEAKDRGRNRLIKFNDQMNKEA 418


>gi|160898922|ref|YP_001564504.1| diguanylate cyclase [Delftia acidovorans SPH-1]
 gi|160364506|gb|ABX36119.1| diguanylate cyclase [Delftia acidovorans SPH-1]
          Length = 409

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 17/184 (9%)

Query: 82  LGYISGSILKELFISYNRISQL-------SRIDCLSGLLNHSAFISSLGSY-------NE 127
           LG    ++L EL   + R+ Q        +  D L+GL N   F   L           +
Sbjct: 217 LGDNFNALLAELQTRHERLQQQNSALERQASRDSLTGLANRLHFEQRLQQALDSAAESGQ 276

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LG 186
           KL+++F D D FKQ+ND +GH VGD ++  +  +L         V RLGG+EFA      
Sbjct: 277 KLAVLFLDNDRFKQVNDAYGHAVGDVLLKAVGARLRSQVRETDLVARLGGDEFAILLYPV 336

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALY 245
               +A ++ + +   +    + +S G  +  ++SAG+A    H + + T++  ADQA+Y
Sbjct: 337 GGGGDAQMVRDKIEAAMRE-PLVVSEGVVLQPSVSAGVALFPKHGQSMETLMRHADQAMY 395

Query: 246 VAKK 249
            AK 
Sbjct: 396 QAKA 399


>gi|33592585|ref|NP_880229.1| hypothetical protein BP1492 [Bordetella pertussis Tohama I]
 gi|33572231|emb|CAE41781.1| hypothetical protein BP1492 [Bordetella pertussis Tohama I]
 gi|332382002|gb|AEE66849.1| hypothetical protein BPTD_1474 [Bordetella pertussis CS]
          Length = 365

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/201 (31%), Positives = 86/201 (42%), Gaps = 15/201 (7%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-----SLGSYNEK---- 128
           I  L  +I+  I   +     R++ LSR D L+ ++N  AF        L     +    
Sbjct: 157 IEALAMWIATLI--RVHRQVERLTHLSRTDPLTQIMNRRAFTESFQTRRLEGERRRAEVG 214

Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             L     DID+FKQIND +GH VGD V+AF+   +   F     V R GGEEF      
Sbjct: 215 TGLGFAVVDIDHFKQINDTYGHDVGDVVLAFVGKMMNEFFRESDCVARFGGEEFCVLMQD 274

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALY 245
             E     L    R  + +  +  S+G ++ IT S G +  +     I      AD ALY
Sbjct: 275 VDEGGMQRLLERFRVALGDCVVTHSAG-TVSITASIGAVLVKTSVAGIDRAFRSADLALY 333

Query: 246 VAKKSGRNRVVCFSDIENNTC 266
            AK  GRNRV      E +  
Sbjct: 334 KAKADGRNRVRIAPSAEQSHA 354


>gi|114319921|ref|YP_741604.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226315|gb|ABI56114.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 495

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 102/254 (40%), Gaps = 17/254 (6%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL 81
           F     ++ ++  F         ++ + L  + +        + V N    I++  +  L
Sbjct: 228 FYGALPLLLWASVFLRETGASTALSLLTLSALTINQLMPEHAVPVWNTGAHILAFGLMAL 287

Query: 82  LGYISGSILKELFISYNR---ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSI 131
           L   +   L+E          + +L+  D L+GL N      +L              ++
Sbjct: 288 LIANAQRNLEEAVAYRAHRVNLERLAYRDMLTGLSNRHHLFQALREAMVRWQRQGAPFAV 347

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQ 190
           +  D+D FK +ND  GH  GD+V+  ++ +L           R GG+EF           
Sbjct: 348 LLMDLDAFKPVNDRHGHHAGDEVLRVIAARLRHSLKEGDLAARYGGDEFVLLLKDCEDLD 407

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITI----SAGIAE-RCHKEPISTIIYRADQALY 245
            A  +   L + + ++ I +       +T+    S G A  R     +  ++ +ADQALY
Sbjct: 408 AAHAVGRRLMREV-DAPITVLGEEGRSVTVDVGMSVGCAHIRQGARTVDGLLQQADQALY 466

Query: 246 VAKKSGRNRVVCFS 259
            AK++G+++V C+ 
Sbjct: 467 QAKRAGKHQVACYD 480


>gi|153821067|ref|ZP_01973734.1| sensory box/ggdef family protein [Vibrio cholerae B33]
 gi|255746319|ref|ZP_05420266.1| sensory box/GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262158200|ref|ZP_06029318.1| sensory box/GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|126521441|gb|EAZ78664.1| sensory box/ggdef family protein [Vibrio cholerae B33]
 gi|255736073|gb|EET91471.1| sensory box/GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262030078|gb|EEY48724.1| sensory box/GGDEF family protein [Vibrio cholerae INDRE 91/1]
          Length = 308

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 11/180 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139
            + + ++     ++ QL+  D L+ L N            +      + LS +  DID F
Sbjct: 127 STDITDIVELREQLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNF 186

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND FGH  GD+V+ FL+     V     F GR+GGEEF      +  + A  LA  +
Sbjct: 187 KLINDQFGHDKGDEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQI 246

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           R+          +    HI + AG++   H +  I+ I  R+DQALY AK++GRNR   +
Sbjct: 247 RQRFAEHPFFEQNE---HIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 303


>gi|91974641|ref|YP_567300.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91681097|gb|ABE37399.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB5]
          Length = 742

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 11/192 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
            ++   + E   +  R++ ++  D L+GL N +     L          ++K++++F  I
Sbjct: 286 LLALMDITERKRAEMRLAFMTHHDGLTGLPNRNLLRKRLDELLVHTRRASDKIAVLFIGI 345

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAIL 195
           D+FK +ND  GH +GDK++  ++ +L         + RL  +EFA    G    QE  +L
Sbjct: 346 DHFKAVNDTLGHAIGDKLLRGVARRLRSTLREEDLLARLNSDEFAVVQTGIRRPQEITLL 405

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A  L   I   +  +  G S+    S GIA      +    ++  AD AL  AK   R  
Sbjct: 406 AKRLLNAIA--EPYLLDGHSVVAGASIGIAVAPVDGDDSEKLLMNADMALSRAKNDSRGS 463

Query: 255 VVCFSDIENNTC 266
              F    +   
Sbjct: 464 FSFFEPGMDARA 475


>gi|95929175|ref|ZP_01311919.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95134673|gb|EAT16328.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 709

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 13/200 (6%)

Query: 78  ISLLLGYISGSILKELFISYN--RISQLSRIDCLSGLLNHSAFISSLGSY-------NEK 128
           I L    IS ++ ++  I+Y   ++ Q+   D L+GL     F   L S+       N  
Sbjct: 249 IFLTCRDISENMRQKEDIAYKEMQLEQILHYDTLTGLPQRDFFFDLLHSHMVGCQKNNRT 308

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGS 187
           L++++ D+D FK IND  GH VGD+V+  ++ +L         + R+ G+EF        
Sbjct: 309 LALLYLDLDRFKNINDTLGHTVGDQVLQEVAQRLQNNIRITDNLSRMSGDEFLITLDPAD 368

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYV 246
           +  E   LA     +I  S          H+T S GI+           ++  AD A+Y 
Sbjct: 369 NLSEVTQLAQKFLSVI--SVPMKIEHHRFHLTASIGISLFPGDATSPEKLLSCADSAMYR 426

Query: 247 AKKSGRNRVVCFSDIENNTC 266
           AK+SGR+    +    N   
Sbjct: 427 AKESGRDAFRFYKPHMNEKA 446


>gi|157377541|ref|YP_001476141.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157319915|gb|ABV39013.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 485

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/191 (30%), Positives = 93/191 (48%), Gaps = 9/191 (4%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYN 126
           ++I+  + +G +  + L  L     ++  ++  D L+G+ N   F               
Sbjct: 295 LAISFIVTIGILMVANLT-LGRYQRKLEFMASTDKLTGVANRQIFEEYFAKAMAEADESE 353

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             +SI+  DID FK++ND +GH +GD VI  +S  L         V R GGEEF      
Sbjct: 354 TPVSIILLDIDLFKRVNDTYGHNIGDLVIKTVSSVLKNQLREKDVVCRWGGEEFLLLLPN 413

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
                A  +A  +R  I   +I ++    I +T+S+G+AE  H E  + +I RAD ALY 
Sbjct: 414 LELSHAVDVAERIRGKIAKRKIRVNE-HEICVTVSSGVAEYNHTEKPNELINRADVALYQ 472

Query: 247 AKKSGRNRVVC 257
           AK+ GR++VV 
Sbjct: 473 AKELGRDQVVL 483


>gi|157376654|ref|YP_001475254.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157319028|gb|ABV38126.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 636

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 82/174 (47%), Gaps = 8/174 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE----KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +  L+  D L+ L N     ++           L+++ FD D FK +NDN+GH +GDK +
Sbjct: 464 LEVLAMTDHLTQLPNRRHTYATGEKLFSVKPPSLALILFDADNFKSVNDNYGHDIGDKAL 523

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             L+            VGR+GGEEF      ++  +A  +A  L   I  S +      +
Sbjct: 524 IELAKISSSHMRKADLVGRVGGEEFLIILPETTLYQATEIAQRLVNSIAKSDLG-DIAAN 582

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV---CFSDIENNTC 266
             +TISAGIA +   +  S ++ RAD ALY AK  GRN  V     SD E +  
Sbjct: 583 FGMTISAGIAAQEKDKSFSELLQRADSALYQAKSEGRNCAVSNTSLSDAETDKA 636


>gi|90020539|ref|YP_526366.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
 gi|89950139|gb|ABD80154.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
          Length = 693

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 12/183 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +L    + +   +  D L+GL N S     +              ++   D+D FK +ND
Sbjct: 252 DLKRLSDDLKYRALHDTLTGLPNRSLLEDEIIRAAAAADRKGHYFAVFMMDLDDFKVVND 311

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
           +FGH  GD+++  ++ +L         V R GG+EF A   G +S  +   +A  + K +
Sbjct: 312 SFGHDFGDQLLKQIAARLQNNLRGEDRVYRYGGDEFVAVVEGLNSMIDVETIAKGILKEL 371

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF-SDI 261
            N       G  + +++S G +    H   +S +++ AD A+Y AK  G+N  V +  DI
Sbjct: 372 NNDL--ELMGRELTVSVSVGASVYPKHGRTLSELVHNADVAMYAAKDKGKNSFVIYHDDI 429

Query: 262 ENN 264
           E N
Sbjct: 430 EEN 432


>gi|297516585|ref|ZP_06934971.1| diguanylate cyclase [Escherichia coli OP50]
          Length = 176

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 7/160 (4%)

Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           +D L+ LLN           I+        LS++  D+D FK+IND +GH  GD+++  +
Sbjct: 13  MDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFKEINDTWGHNTGDEILRKV 72

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           S        +  +V R GG+EF      +SE E    A  +R  +E +++  ++G  I +
Sbjct: 73  SQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIRSRVEKTKLKAANGEDIAL 132

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           ++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 133 SLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELW 172


>gi|254516869|ref|ZP_05128927.1| diguanylate cyclase [gamma proteobacterium NOR5-3]
 gi|219674374|gb|EED30742.1| diguanylate cyclase [gamma proteobacterium NOR5-3]
          Length = 399

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 14/212 (6%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHS 116
           G+       LSL      ++  LG I+ S+     +L  +  +++ L+ ID L+GL N  
Sbjct: 187 GIHDTFRRMLSLNWQQEAMARELGQITNSLRDRNLQLQEARRQLTDLANIDELTGLGNRR 246

Query: 117 AFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGT 168
               +L          +  LS++  D+D+FK+ ND +GHP GD+V+  + D +       
Sbjct: 247 LINQTLREEVNRARRSHGWLSVILIDVDFFKKYNDTYGHPAGDEVLRRIGDIMQRATARA 306

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAER 227
               GR GGEEF     G+   EA   A  L+ ++    I   +   S  I+IS G+   
Sbjct: 307 GEVAGRYGGEEFILVLPGARAPEALKTAERLKLLVHEENIPHGASEVSDRISISQGVLSI 366

Query: 228 CHKEPIS--TIIYRADQALYVAKKSGRNRVVC 257
              E +    ++ RAD ALY AK+ GRN++  
Sbjct: 367 MPDEEVDPGVLVDRADAALYEAKREGRNKIAV 398


>gi|218892855|ref|YP_002441724.1| putative sensor protein [Pseudomonas aeruginosa LESB58]
 gi|218773083|emb|CAW28895.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
          Length = 1120

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 14/189 (7%)

Query: 83  GYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           G I G++L      +       +S  +  D L+GL N + F   L            + +
Sbjct: 659 GEIIGTVLVFQNVTKARAMQRELSYHASHDALTGLFNRTKFEEELQRALANAQERATQHA 718

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           + F D+D FK +ND+ GH  GD ++  LS  L         + RLGG+EF          
Sbjct: 719 LCFIDLDRFKVVNDSAGHAAGDMLLRELSRILADRTRASDTLARLGGDEFGLLLFDCDLA 778

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKK 249
           EA  +A+ L + I + +     G    +  S GI A        S ++ +AD A Y AK 
Sbjct: 779 EAEQVASKLIEQICSVRFPW-EGRLYDVGASIGITALTATSRSTSELMSQADVACYAAKH 837

Query: 250 SGRNRVVCF 258
           +GRNRV  +
Sbjct: 838 AGRNRVSVY 846


>gi|205359697|ref|ZP_03224392.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205343837|gb|EDZ30601.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
          Length = 663

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSESLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 394 VFSPEMNQ 401


>gi|163800146|ref|ZP_02194047.1| hypothetical protein 1103602000595_AND4_05684 [Vibrio sp. AND4]
 gi|159175589|gb|EDP60383.1| hypothetical protein AND4_05684 [Vibrio sp. AND4]
          Length = 775

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 80/189 (42%), Gaps = 11/189 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           +  S ++    S   ++  ++ D L+GL N       L          N  + ++F D+D
Sbjct: 329 LLTSEIERRKSSEMELAYQAKHDVLTGLPNRVYGSERLDLELSRAHRMNSNVLVMFIDLD 388

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA 196
           YFKQIND+ GH VGD+++   +++L         + R+GG+EF            A   A
Sbjct: 389 YFKQINDSMGHLVGDEILKIAAERLNSTVRHTDLLARIGGDEFLLVMPEFHDIDSAKRFA 448

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             +  +   ++  +       ++ S G++      +    ++  AD A+Y  K+ GRN  
Sbjct: 449 AKVLSVF--TEPFVWRNHEFFLSASVGMSVFPKDGDNAEQLLACADMAMYRVKQDGRNAF 506

Query: 256 VCFSDIENN 264
             +    N 
Sbjct: 507 CFYDHNMNQ 515


>gi|50085379|ref|YP_046889.1| hypothetical protein ACIAD2279 [Acinetobacter sp. ADP1]
 gi|49531355|emb|CAG69067.1| conserved hypothetical protein; putative membrane protein
           [Acinetobacter sp. ADP1]
          Length = 352

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 110/257 (42%), Gaps = 19/257 (7%)

Query: 19  LESFSPHTFMIYFSIFFS---------IFIATVIFIANIFLFYIGLTPFY-GLEYILVEN 68
           +   SP   +I  +I  S         I   ++I +  IFL +   T F   L +  +  
Sbjct: 98  IMKISPLPSLIMVAILVSDRFAAGGWQILRPSLIAMLGIFLIFWSFTGFQVNLSFNEMMV 157

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------ 122
            S + ++    + L  ++  +  +L        +++ +D    + N   F   L      
Sbjct: 158 WSSLPLATIYLISLSILTRKLAVQLIQKNREFERIALMDPRLHIPNRRLFEQRLSSIFMQ 217

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                    ++  D+D+FK+IND +GH  GD  +A +S  L  + G      R GG+E A
Sbjct: 218 TQRNASSAHLILLDVDHFKKINDTYGHEAGDYFLAEMSSILRELIGPKDTPARFGGDELA 277

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
              +  S +E  +LA  ++  I+  QI + S P    T+S GIA     + +S     AD
Sbjct: 278 IIVVDQSNEEIILLARRIKNSIQ--QIRLQSDPEFSTTVSIGIASAETVDTVSAWFALAD 335

Query: 242 QALYVAKKSGRNRVVCF 258
           +ALY  K++GRN    +
Sbjct: 336 KALYQVKRNGRNGFHLY 352


>gi|260463951|ref|ZP_05812147.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075]
 gi|259030326|gb|EEW31606.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075]
          Length = 356

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 8/178 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKL---SIVFFDIDYFKQIN 143
           L+ +        +L+  D L+ + N  AF   +      N+ +   +++  DID FK IN
Sbjct: 163 LESVKSKLEEYKRLADTDPLTHIWNRRAFDKEITRIYNSNKGILFNALILADIDRFKDIN 222

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GHPVGDK+I  +++         MFV R GGEEFA    G+SE     ++  +R +I
Sbjct: 223 DRYGHPVGDKIIQIIAEIFQTSIRGDMFVARTGGEEFALIIEGASEDATYDISERIRALI 282

Query: 204 ENSQINISS-GPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           E +    S  G +   +T+S GI      +    +  +AD+ALY +K SGRNRV   S
Sbjct: 283 EQTPFTSSQTGANYGTVTVSMGICMASEADGPEDLYTKADRALYRSKVSGRNRVTRHS 340


>gi|152981019|ref|YP_001354994.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille]
 gi|151281096|gb|ABR89506.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille]
          Length = 563

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 91/187 (48%), Gaps = 11/187 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
            + G  +     +  R+  ++  D L+GL N S     L          +   ++V  D+
Sbjct: 112 LVVGHDISGQQATEERLRHMATHDELTGLPNRSLLADRLRMAIAQSRRTDRGFAVVALDL 171

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK++ND  GHPVGD ++   + +L         + R+GG+EF A   G+ ++    + 
Sbjct: 172 DGFKKVNDALGHPVGDALLRVAAARLRETLRDVDTLARVGGDEFVAVLHGAVDE--VEIH 229

Query: 197 NDLRKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           N  R++I   Q+     G +++++ S G+A    H E    ++  AD A+Y AK++G+ R
Sbjct: 230 NVARRMIAAIQLPFEIDGNALYVSTSIGVAIYPAHGETDVKLLAHADSAMYRAKETGKAR 289

Query: 255 VVCFSDI 261
            + ++ +
Sbjct: 290 CIIYNHL 296


>gi|78778282|ref|YP_394597.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans
           DSM 1251]
 gi|78498822|gb|ABB45362.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurimonas denitrificans DSM 1251]
          Length = 577

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 90/185 (48%), Gaps = 11/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           + + ++  S  ++   +  D L+ L N + F   L +        N ++++ F DID FK
Sbjct: 135 TDISDIKKSEKKVYYNANYDSLTKLPNRTYFNKELEAILKEADKENYQVALYFIDIDKFK 194

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
           ++ND  GH VGDK++  +S +L+        + R+GG+EF   A    SE+    LA++L
Sbjct: 195 EVNDTHGHNVGDKMLINVSKRLLNSIRENDVIARIGGDEFVLIAKNIKSEENVKQLASNL 254

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +K I+  +         H+ +S G+A    H      ++  AD A+Y  KKS R+    +
Sbjct: 255 KKKIK--EPMEVDNQIFHVGLSIGVAIYPQHGISSEELLKNADIAMYEVKKSTRDGFKIY 312

Query: 259 SDIEN 263
             + +
Sbjct: 313 DKLMS 317


>gi|227820477|ref|YP_002824448.1| GGDEF/EAL transmembrane sensory box protein [Sinorhizobium fredii
           NGR234]
 gi|227339476|gb|ACP23695.1| putative GGDEF/EAL transmembrane sensory box protein [Sinorhizobium
           fredii NGR234]
          Length = 833

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 9/205 (4%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ 118
           L++ L   + ++     L     + + EL  +  R    +  D L+GLLN   F      
Sbjct: 351 LIDVLIKEVQALEAGETLSLAVMTDVTELKTAEERNHVQAITDHLTGLLNRPGFEMALDG 410

Query: 119 -ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
            I    +   +L+ +  D+D FK INDN GH  GD+V+  ++ ++         V RLGG
Sbjct: 411 AIRQAAADGGELACLLIDLDRFKPINDNLGHAAGDEVLRQIAGRIRAQVRGEDRVARLGG 470

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTI 236
           +EF      +  + AA L    R     ++  I  G ++ ++ S GIA         + +
Sbjct: 471 DEFVVLIPAAKAESAA-LQISARIAAACAEPVIVDGSALSLSASIGIALYPAQARTAAEL 529

Query: 237 IYRADQALYVAKKSGRNRVVCFSDI 261
           + ++D A+Y  K +G+N    F  +
Sbjct: 530 LQKSDMAMYARKHNGKNGAKLFDPL 554


>gi|24373054|ref|NP_717097.1| GGDEF family protein [Shewanella oneidensis MR-1]
 gi|24347227|gb|AAN54541.1|AE015592_14 GGDEF family protein [Shewanella oneidensis MR-1]
          Length = 596

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 17/220 (7%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLS 110
            YI        EY  +     +++     L +  + G++ K  F+      +++++D L+
Sbjct: 367 LYIAQQMVKEREYTNMLMFITILVGGLFFLAILLVVGNLQKRRFM------RMAKMDALT 420

Query: 111 GLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           G+LN         + F+ +     +   ++ FD+D+FK+IND++GH  GD  +  + + L
Sbjct: 421 GVLNRGAGQDLGENMFVQAAARGGD-YCVILFDLDHFKRINDSYGHGTGDWALKKVVEVL 479

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                      R+GGEEFA     ++E +   +A   R  IE    ++S G    IT S 
Sbjct: 480 KPHIRNGDVFARIGGEEFALFLPYANEAKGLDVAEQCRSRIEAIDTHLS-GHKFTITASF 538

Query: 223 GIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           G++     +  +  +++RAD ALY AK +GRN V C+ D 
Sbjct: 539 GVSGMTKDDLSLDPLLHRADMALYAAKSNGRNCVSCYQDA 578


>gi|332308397|ref|YP_004436248.1| response regulator receiver modulated diguanylate cyclase
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175726|gb|AEE24980.1| response regulator receiver modulated diguanylate cyclase
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 347

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 17/198 (8%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           + +++L   +   +  EL     ++  LS +D L+G+ N     + L         +   
Sbjct: 136 VNLTILRARVRNHM--ELVYYRKQLEFLSSVDGLTGVANRRQLDTVLLQQFASTIRFGRC 193

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGS 187
           L+++  DID FK  ND +GH  GD  +  ++  +  V      FVGR GGEEFA     +
Sbjct: 194 LTLMMIDIDDFKPYNDFYGHMQGDDCLKRVAHAIQSVRRRESDFVGRYGGEEFAMVLPDT 253

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEP------ISTIIYRA 240
             +   ++A  L + +    I      +   +TIS G+     K+       +  +I  A
Sbjct: 254 DLEGGLVVAQKLLQTVRGLNIEHQGATAADRVTISIGLTVYEAKQDYPEHISVEELIKLA 313

Query: 241 DQALYVAKKSGRNRVVCF 258
           D+ LY AK+ G+NRV  +
Sbjct: 314 DRQLYAAKRDGKNRVNYY 331


>gi|330955000|gb|EGH55260.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 897

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + +  ++  RI +L+  D L+ L N  AFI +L        +  +S++  DID FK+IN
Sbjct: 454 DITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDERFARDTDTPMSLLLVDIDNFKRIN 513

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++  L+ +L         + R    EFA     + ++     A  +   +
Sbjct: 514 DSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLIDNTDQEAGQATATQVLATL 573

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I +T S G+A    H     T++  A  AL+ AK +G+++V  F++  
Sbjct: 574 DKPMF--VDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFTEAL 631

Query: 263 NNTC 266
           N   
Sbjct: 632 NAEA 635


>gi|325294770|ref|YP_004281284.1| diguanylate cyclase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065218|gb|ADY73225.1| diguanylate cyclase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 437

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 12/173 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           Y  + + S ID L+GL N    +  L          N+ ++I   DID FK+IND +GH 
Sbjct: 266 YKLLRRESSIDPLTGLYNRRFGLKRLREIIKLALRENKPIAIGMLDIDNFKRINDTYGHL 325

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD ++  +++ ++          R GGEE   A   ++E  A  +   +RK++E+    
Sbjct: 326 AGDYILKKIAEIVINNIRENDLAVRFGGEEILIALYNTNESTAKDVFERIRKLVESYTFK 385

Query: 210 ISSGPSIHITISAGIAERCH----KEPISTIIYRADQALYVAKKSGRNRVVCF 258
              G  I +T+S G             +  +I  AD+ALY AK +G+N  V F
Sbjct: 386 Y-EGQEISVTVSIGYHVFYPMGKKDVDVEQLIDFADKALYDAKSAGKNLTVKF 437


>gi|294340737|emb|CAZ89129.1| conserved hypothetical protein; putative Adenylyl and guanylyl
           cyclase catalytic, GGDEF, Response regulator receiver
           and CheY-like domains [Thiomonas sp. 3As]
          Length = 632

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 13/178 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
             L+ L      + Q +  D L+G+ N  A  +          +  + L+ + FD+D FK
Sbjct: 449 RTLRTLEQRNAELLQAAGTDELTGVGNRRALDAFLPPLFAQAAAEGQPLACLMFDLDEFK 508

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND  GH VGD+ +  +   L        FV R+GGEEF      ++E+ A  +A  +R
Sbjct: 509 RINDRLGHDVGDQALRAVGRVLRQQSRGMDFVARVGGEEFLMLCPQTTEEAAMRVAERIR 568

Query: 201 KIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             I   Q ++       +++S G+          +++I  ADQAL  AK+ GRNRV  
Sbjct: 569 AAIAVPQADLP-----PLSVSVGVALGAAAFADAASLIRAADQALLQAKRLGRNRVCL 621


>gi|213968729|ref|ZP_03396871.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
 gi|301381344|ref|ZP_07229762.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato Max13]
 gi|302060230|ref|ZP_07251771.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato K40]
 gi|302130019|ref|ZP_07256009.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213926662|gb|EEB60215.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
          Length = 818

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 16/190 (8%)

Query: 83  GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIV 132
           G +SG++L    ++  R     +S  +  D L+GL+N S F   L             ++
Sbjct: 348 GVVSGAVLVLHDMTQERQYIADLSWQAAHDPLTGLVNRSEFERRLQQVLDDSSTSSHCLM 407

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F D+D FK +ND  GH  GD+++  L   L         + RLGG+EF    +  +   A
Sbjct: 408 FLDLDQFKLVNDTGGHAAGDELLRQLCQALPQGLRDSDTLARLGGDEFGVLLVDCTTSTA 467

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI---IYRADQALYVAKK 249
             +A  LR+I++     +  G     T+S G+      +  +T+   +  AD A Y+AK+
Sbjct: 468 HDIAEALREIVQGLHF-MWKGRPFMTTVSIGLVHL--GDTPATLEGSLSAADMACYMAKE 524

Query: 250 SGRNRVVCFS 259
            GRNRV  +S
Sbjct: 525 KGRNRVQVYS 534


>gi|119477173|ref|ZP_01617409.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC and GAF sensor(s) [marine gamma
           proteobacterium HTCC2143]
 gi|119449536|gb|EAW30774.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC and GAF sensor(s) [marine gamma
           proteobacterium HTCC2143]
          Length = 642

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 12/178 (6%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150
           + I +L+  D L+GL N       L          N   +++  D+D FK +ND+ GH +
Sbjct: 211 DEIRRLAFFDPLTGLPNRRLLFDRLAHAVTTSARTNLYGAVMLLDLDNFKILNDSMGHGI 270

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG--SSEQEAAILANDLRKIIENSQI 208
           GD ++  +S +L +       + RLGG+EF        S E++AA  A  + + I  S +
Sbjct: 271 GDLLLQKVSLRLKMCMREDDTLARLGGDEFVILLENLSSDEKKAAAQAEVVTQKILVSLV 330

Query: 209 NISS--GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
              +  G   + T S GI      +     ++  AD A+Y AK + RN    F  +  
Sbjct: 331 EDYNLQGFVHNSTASIGIVMFKGDDLSFGDLLKNADVAMYQAKAASRNTFRFFDPVMQ 388


>gi|78067162|ref|YP_369931.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. 383]
 gi|77967907|gb|ABB09287.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. 383]
          Length = 730

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 101/208 (48%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVIIS-ITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +Y    N+ L++ S IT+++L  + ++  ++ +L      ++QL+  D L+GL N  A +
Sbjct: 242 DYYHTRNVYLLMTSFITLAMLAFFGVATGLIGKLLGREREMTQLAEYDLLTGLANRYATL 301

Query: 120 SSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
             L       +   +L ++F D+D FK +ND  GH  GD V+   + +L    G    + 
Sbjct: 302 RGLRNDVSMPASLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTASRLSDAVGDEGSLA 361

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EF     G   E+ A  LA  + ++    +     G S  +  S GIA      E
Sbjct: 362 RIGGDEFVVVMKGDDVERRAVRLAEAIIRMF--GEPFDVRGSSFVLHASIGIALHSVANE 419

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +AD A+Y AK +G+N    ++
Sbjct: 420 SEIDLLKKADLAMYSAKDAGKNCYQFYA 447


>gi|84393236|ref|ZP_00991998.1| sensory box/GGDEF family protein [Vibrio splendidus 12B01]
 gi|84376142|gb|EAP93028.1| sensory box/GGDEF family protein [Vibrio splendidus 12B01]
          Length = 579

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 18/192 (9%)

Query: 84  YISGSILKELFISYNRIS-------QLSRIDCLSGLLNHSAFISSLGSYNE-------KL 129
            I    + E +++  ++        +LS +D L+ + N   F   L +           L
Sbjct: 382 LIMARDITERYLAEQKLEEANLELERLSFMDSLTQVSNRRRFDEQLSTLWHYHVREKLPL 441

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSS 188
           +I+  DID+FK  ND +GH  GD  +  +S     V   +   V R GGEEF      ++
Sbjct: 442 TIMLCDIDFFKGYNDFYGHQQGDDALIQVSQAFKQVLNRSSDCVARYGGEEFGFILPNTT 501

Query: 189 EQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAER--CHKEPISTIIYRADQALY 245
            + A ++A  +   I   ++ +  S  S  IT+S GI        + + + +  AD ALY
Sbjct: 502 AEGAQLVAQRIHDGILKLELAHEKSNVSEFITVSIGIISYIPTPDDEMDSAVALADSALY 561

Query: 246 VAKKSGRNRVVC 257
            AK  GRNR + 
Sbjct: 562 QAKSDGRNRSMV 573


>gi|120597904|ref|YP_962478.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. W3-18-1]
 gi|146293924|ref|YP_001184348.1| diguanylate cyclase/phosphodiesterase [Shewanella putrefaciens
           CN-32]
 gi|120557997|gb|ABM23924.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. W3-18-1]
 gi|145565614|gb|ABP76549.1| diguanylate cyclase/phosphodiesterase [Shewanella putrefaciens
           CN-32]
 gi|319427301|gb|ADV55375.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Shewanella putrefaciens 200]
          Length = 682

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
             IL +   + +++ +++  D L+GL N +  + ++         +    +++F D+D F
Sbjct: 232 NQILIQFSQTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRSRVHKRSFALMFIDLDRF 291

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND+ GH +GD+ +A ++  L  V G    V RLGG+EF   A    S  +AA   + 
Sbjct: 292 KNINDSLGHALGDQFLARIARILERVVGDKGTVSRLGGDEFVILADAVHSPDQAADFVDK 351

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L  +++ +     +  +IH   S GI+           +I  AD A+Y AK +G N+   
Sbjct: 352 L--LVQLNVPIQLNEHAIHPAASIGISIYPEDGNSAEDLIRHADIAMYSAKAAGSNQWAF 409

Query: 258 FSDIENNTC 266
           F        
Sbjct: 410 FKQQMTERA 418


>gi|302865801|ref|YP_003834438.1| diguanylate cyclase [Micromonospora aurantiaca ATCC 27029]
 gi|315502347|ref|YP_004081234.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. L5]
 gi|302568660|gb|ADL44862.1| diguanylate cyclase [Micromonospora aurantiaca ATCC 27029]
 gi|315408966|gb|ADU07083.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. L5]
          Length = 811

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 99/227 (43%), Gaps = 13/227 (5%)

Query: 38  FIATVIFIANIFLFYIGLTPF--YGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           F+      A+     +    F  Y +    VE  +LV       L L  + G  ++ L  
Sbjct: 246 FVPMFAMAASAIYHLVQGGGFDGYAIVAGTVEGFALV---TRQYLALNDVRGYAIR-LAE 301

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGD 152
                 +L+  D L+GL N    + +L    E      ++  D+D FK +ND  GH VGD
Sbjct: 302 REAHFRELAHTDPLTGLANRRGLLRALHRSAEAGVPCVLLGLDLDGFKNVNDMRGHDVGD 361

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  +  +L           RLGG+EFA    GS++     +A+ L  ++         
Sbjct: 362 AVLIEVGRRLRGNLRPGDLAARLGGDEFAVLMHGSADPG--PVADRLLGVL-GRPYEQGD 418

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           GP + +++S G+A    ++ +  ++  AD AL  AK+ G+NR+  + 
Sbjct: 419 GP-VFLSVSIGVAAGHGEQDVELLLRNADLALRYAKQRGKNRIERYD 464


>gi|253686941|ref|YP_003016131.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251753519|gb|ACT11595.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 489

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 115/242 (47%), Gaps = 20/242 (8%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
           F I   +   T + +  +++  +G+      E  +   L+   ++I + L++  +S S  
Sbjct: 247 FPIMSLLCAITGVILNYLYINQVGILINSNSEAYINSFLTTARLNIAM-LIMAMLSVS-- 303

Query: 91  KELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDID 137
              F+S NR     I   S  D L+   N  AF+S L             +L+++F DID
Sbjct: 304 --HFVSMNRRLIKIIESNSLKDALTNTFNRRAFLSMLNGRQGLLMNKRKRQLTLLFLDID 361

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           YFKQ+ND +GH  GD++IA  +  L         + R GGEEF  AA   + +++A +A 
Sbjct: 362 YFKQVNDTYGHASGDELIASFARMLSANIRPSDILCRWGGEEFVIAAYDLTAEQSAAMAE 421

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRV 255
            LR + E++ + +S G  I  TIS G+             +I  AD+ LY AK  GRNRV
Sbjct: 422 TLRHLTESTPLVLSDGREIRFTISIGVVTFPQYEGGNTYDLIGLADEQLYKAKAQGRNRV 481

Query: 256 VC 257
             
Sbjct: 482 CL 483


>gi|254458042|ref|ZP_05071469.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207085435|gb|EDZ62720.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 760

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 11/211 (5%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           ++    IL+ ++ +  +S  +  LL     +I          +    + D L+GL N + 
Sbjct: 296 WHEFLNILLAHVIMFTLSFIVFFLL---FRNIATSEERKNRELIYQVQHDTLTGLPNRTY 352

Query: 118 FISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
              ++  Y  K      +++ D+D FK IND FGH VGDK++  ++ +L   F     + 
Sbjct: 353 MYENIKKYKTKHREIYHVLYIDLDNFKNINDKFGHTVGDKILVEVAHRLNSFFDEEDMLI 412

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           R GG+EF        E +       L  +I  S++         I  S GIA+       
Sbjct: 413 RQGGDEFIVLRECIDETKIEENLETLITLI--SKVYHVDSKEFRIGASVGIAQYPVDALT 470

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           I  ++  AD A+Y AKK  +N    FS+   
Sbjct: 471 IEELLSLADTAMYEAKKR-KNSYCLFSEKMR 500


>gi|119774648|ref|YP_927388.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119767148|gb|ABL99718.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella amazonensis SB2B]
          Length = 416

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 79/175 (45%), Gaps = 10/175 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQIND 144
           E      ++ + + +D L+ + N   F +        LG      S+   DID+FK +ND
Sbjct: 241 ESLEMVRQLWEQANLDYLTSVYNRRFFFNRFSQQVPVLGQQGASFSLAVLDIDFFKDVND 300

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD V+   + +L    G    V R GGEEF  A  G   + A  L    R+ + 
Sbjct: 301 KHGHDVGDFVLTEFASRLKQSLGQHFTVARFGGEEFVVALKGLDGKRALALMEGFRERLA 360

Query: 205 NSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
                +     + +T S GI    H   E + ++I +AD ALY AK +GRNR V 
Sbjct: 361 MEPF-VFGELELRLTASIGIVALGHDSEETLDSLIKQADVALYQAKTNGRNRCVL 414


>gi|330902113|gb|EGH33392.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 302

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 14/190 (7%)

Query: 83  GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           G ISG++L    ++  +     +S  +  D L+GL+N S F   L               
Sbjct: 18  GVISGAVLVLHDMTQEQQYIADLSWQAAHDPLTGLVNRSEFERRLQRVLDEDCGQGRSHC 77

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F D+D FK +ND  GH  GD+++  L   L         + RLGG+EF    +    +
Sbjct: 78  LMFLDLDQFKLVNDTGGHAAGDELLRQLCRALPQGLRDGDTLARLGGDEFGVLLVDCPAE 137

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
            A  +A  LR+ ++     +  G     T+S G+         +   +  AD A Y+AK+
Sbjct: 138 TALDIAEALREAVQRLHF-MWKGRPFMATVSIGLVHLGDTPASLEGSLSAADMACYMAKE 196

Query: 250 SGRNRVVCFS 259
            GRNRV  +S
Sbjct: 197 RGRNRVQAYS 206


>gi|258620971|ref|ZP_05716005.1| GGDEF family protein [Vibrio mimicus VM573]
 gi|258586359|gb|EEW11074.1| GGDEF family protein [Vibrio mimicus VM573]
          Length = 505

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 103/241 (42%), Gaps = 16/241 (6%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS----LVIISITISLLLGYISGS 88
           I   +F ++V+++ N+++    + P      +L +  +    +   S  IS  +   + +
Sbjct: 261 ILALLFFSSVMYVVNLWVVVTLIKPITAANQVLQQFKTSGGKMPDASTFISAEMKEFAST 320

Query: 89  I---LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFK 140
           I   + +L  S   +   S  D L+ + N       L  Y        L +   DIDYFK
Sbjct: 321 INHIVTQLDESQQVLRWQSEHDPLTRISNRRYLEKQLKGYLSDRPCRYLVLYLIDIDYFK 380

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199
             NDNFGH  GD+ +  ++  L  +       V R GGEEF       SE +A   A  +
Sbjct: 381 PFNDNFGHLAGDEALCSVAQALQAIEFDGEKIVTRFGGEEFCVVLASDSELDAEQFAQQI 440

Query: 200 RKIIENSQINISSGPSI-HITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              +    I         ++T+S G   A     +   ++ ++AD ALY AK+SGRNR V
Sbjct: 441 HTKVAELAIANPQDSDFQYLTVSIGGVYAISPRMDAYLSLFHQADMALYEAKESGRNRYV 500

Query: 257 C 257
            
Sbjct: 501 V 501


>gi|289207714|ref|YP_003459780.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           K90mix]
 gi|288943345|gb|ADC71044.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           K90mix]
          Length = 575

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 21/199 (10%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVF 133
           +LG +    L+    S  R+   +  D L+GL N S F   L         +   L++V 
Sbjct: 363 VLGMVRDITLE--KASEERLWHQAHHDSLTGLANRSLFQEHLRQALRRAQRHERGLALVV 420

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK IND  GH  GD V+  ++ +L         V R+GG+EF        + +A 
Sbjct: 421 CDLDGFKPINDRLGHDAGDVVLVTVAGRLREGVRECDVVARMGGDEFVILLENMDDPDAL 480

Query: 194 I-----LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVA 247
           +     L     + IE ++       ++ + +S G A   H       ++ +AD+A+Y A
Sbjct: 481 LGVGLKLIERFAEPIEVNR------EAVQVGLSMGAALYPHDSADAEGLMLQADRAMYAA 534

Query: 248 KKSGRNRVVCFSDIENNTC 266
           K++G   +V +  ++ +  
Sbjct: 535 KEAGGGGIVLYEQVDASRA 553


>gi|254456940|ref|ZP_05070368.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207085732|gb|EDZ63016.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 591

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/252 (27%), Positives = 109/252 (43%), Gaps = 29/252 (11%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISIT------------ISLLLGYIS 86
           + + IF  +  L+ +  T +    Y +   L+LV+  +T             S +  YI+
Sbjct: 338 VDSSIFKNSCELYKLEATEYICTPYTISNELTLVLTIVTRDEKTTEYVRSITSDIEDYIT 397

Query: 87  GS----ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFD 135
            +    I K+L  + N+   ++R+D L+ + N                       ++  D
Sbjct: 398 TARPAIISKKLMQTLNK---MARVDQLTDMYNRKFLDEFADVSIPQAVRAGTSYGVLMVD 454

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           IDYFK INDN+GH VGD+ I  +S  +           R GGEEF              +
Sbjct: 455 IDYFKMINDNYGHDVGDEAIRIISGVIKKSIRKADIAIRYGGEEFLVLLYNCEANNIVQI 514

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           AN +R      +I  ++G S   T+S G +      E I   I  AD +LY AK+ GRN+
Sbjct: 515 ANSIRTEFSKQKI-YANGESFSKTLSVGCSSFPKDSESIWKCIKFADISLYQAKEGGRNQ 573

Query: 255 VVCFSDIE-NNT 265
           VV F++   NNT
Sbjct: 574 VVAFNEDMLNNT 585


>gi|329928389|ref|ZP_08282259.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
 gi|328937825|gb|EGG34231.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
          Length = 672

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/197 (26%), Positives = 100/197 (50%), Gaps = 11/197 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS--SLGSYN 126
           L  V ++I   LL+ +  G++  +  +    + +L+  D ++GL N +         +  
Sbjct: 215 LYCVTVAIFAILLISW--GAMFFDRHV----LEKLAYQDTITGLPNRNEMNRFFRTNAET 268

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           ++++I+F D+D FK IND  GH VGD ++  +  +L     +   V R+GG+EF      
Sbjct: 269 DQITILFLDLDQFKAINDTLGHNVGDLLVQEVGKRLRQFIRSGQQVFRIGGDEFLVILKQ 328

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALY 245
           S    A  LA+D+ + I+  ++    G  +++T+S GI+    H    +T++  AD A+Y
Sbjct: 329 SDPNYAQRLADDILQQIK--KVYHIDGNELYVTVSIGISIGSVHSSDRTTLLKNADTAMY 386

Query: 246 VAKKSGRNRVVCFSDIE 262
            AK  G+N+   + +  
Sbjct: 387 KAKGLGKNQQCLYDEEM 403


>gi|270486702|ref|ZP_06203776.1| PAS domain S-box [Yersinia pestis KIM D27]
 gi|270335206|gb|EFA45983.1| PAS domain S-box [Yersinia pestis KIM D27]
          Length = 693

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 8/179 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDI 136
             +    +         +   +  D L+GL+N       L     +L+      + + D+
Sbjct: 511 AVVVFQDVTRARHEQRALQYQASHDMLTGLINRRRLEERLTLAINQLAHDGQHILCYVDL 570

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK +NDN GH  GD V+  ++  +         V RLGG+EFA        + AA + 
Sbjct: 571 DYFKDVNDNAGHEAGDMVLRMVAQTMQQAVRENDIVARLGGDEFAIVLFNCPSKSAAEIL 630

Query: 197 NDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +   I   Q +   G S  +T S G I      E  S  +  AD A Y AK +GRN+
Sbjct: 631 EQVVADIAAIQFHWH-GQSYVLTASLGAIPLTQQTESASQAMRLADIACYKAKHAGRNQ 688


>gi|251788705|ref|YP_003003426.1| PAS/PAC and GAF sensors-containing diguanylate cyclase [Dickeya
           zeae Ech1591]
 gi|247537326|gb|ACT05947.1| diguanylate cyclase with PAS/PAC and GAF sensors [Dickeya zeae
           Ech1591]
          Length = 505

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 11/178 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L  S     QL+  D L+ L N   F   +          N K++++F D+D FKQIND 
Sbjct: 326 LRRSEEHYRQLAHYDSLTSLANGLTFAEQMEQAIQLSRQTNRKIALMFLDLDKFKQINDT 385

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIE 204
           FGH  GD ++   + ++         V R  G+EF     G  E +    +A+ +   + 
Sbjct: 386 FGHATGDLLLKEAAARMRGAVRETDTVYRRSGDEFIILLQGIKEVENTLYVADKIHHAL- 444

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            ++     G  + I+ S GIA    H     T+   AD A+Y AK  GR++   + D+
Sbjct: 445 -NEPFYIEGKKLDISCSIGIALYPEHGTDSLTLAINADAAMYQAKALGRSQTQIYHDL 501


>gi|229166600|ref|ZP_04294352.1| Sensory box/GGDEF [Bacillus cereus AH621]
 gi|228616854|gb|EEK73927.1| Sensory box/GGDEF [Bacillus cereus AH621]
          Length = 805

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 93/200 (46%), Gaps = 10/200 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           +++V I I       Y+    +  +    + I+ L+  D ++ + N   F   L    E+
Sbjct: 341 VTIVPIMIEGQTFGSYVMVKDITRMKKQQDEINYLAFHDTVTEIGNRIFFQKELEKSIER 400

Query: 129 -------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                    +++ D++ FK IND  GH +GD V+  ++ +        + + R+GG+EFA
Sbjct: 401 ARKTQGEFGLLYIDLNRFKTINDTLGHSIGDSVLKEVAKRFRTCLLPAIPLARIGGDEFA 460

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRA 240
                 +EQ+   L   L +I E +   + +  S ++++S GIA         +T++  A
Sbjct: 461 IIVHNHTEQQLLDLCETLFRITEEA--FVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHA 518

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D A+Y AK+ G N V  + +
Sbjct: 519 DIAMYSAKEKGNNAVCMYDE 538


>gi|149928083|ref|ZP_01916330.1| GGDEF domain [Limnobacter sp. MED105]
 gi|149823169|gb|EDM82406.1| GGDEF domain [Limnobacter sp. MED105]
          Length = 347

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 91/198 (45%), Gaps = 19/198 (9%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS-------A 117
           L+  L ++I S+    L  +   ++ K   +    +S  +  D L+GLLN         A
Sbjct: 153 LILTLVVLIHSVGFVSLTLWRQSTLRKRFAVELLHLSNQACSDPLTGLLNRRGWQDMSSA 212

Query: 118 FISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
           ++  +   N+ + S+   DIDYFKQ ND +GH  GD  +   ++ L   F     + R+G
Sbjct: 213 YLRRMQRENQLQGSVAIIDIDYFKQYNDTYGHEAGDIRLREFAETLRTNFRPGDLIARVG 272

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236
           GEEFA      +  +   + + +R           +G    +  SAGI +  H + I   
Sbjct: 273 GEEFAVLLPNCTADDTQRIVDRIR----------LNGC-CKVGFSAGICDISHTDSIDRT 321

Query: 237 IYRADQALYVAKKSGRNR 254
           + +AD ALY AK  GRNR
Sbjct: 322 MAQADHALYQAKNKGRNR 339


>gi|46578838|ref|YP_009646.1| sensory box protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|46448250|gb|AAS94905.1| sensory box/GGDEF domain/EAL domain protein [Desulfovibrio vulgaris
           str. Hildenborough]
          Length = 1072

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 12/203 (5%)

Query: 67  ENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
           E LS+  I         Y++    + +L     +I      D L+GL N +  +  L   
Sbjct: 592 EWLSISAIRDESGATTNYVALFHDISDLKAKEAQIRYQGMHDALTGLPNRALLLERLAGE 651

Query: 126 -------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                       +++ DID FK IND+ GH  GDK IA +++ L ++      + RLGG+
Sbjct: 652 LKEGQGTGRLCGLLYIDIDNFKTINDSLGHEAGDKFIAEVAEHLTLLIRPEDTLSRLGGD 711

Query: 179 EFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTI 236
           E+        E+ E  ++A  +      SQ        +H+ +S GIA      +    +
Sbjct: 712 EYVILVANPGEEREVVLVAERILHHF--SQPIALLDRELHVGLSIGIAIHPADGKGPDEL 769

Query: 237 IYRADQALYVAKKSGRNRVVCFS 259
           +  AD A+Y AK  G+N    FS
Sbjct: 770 LTNADLAMYRAKAQGKNTYERFS 792


>gi|332185589|ref|ZP_08387337.1| sensory box protein [Sphingomonas sp. S17]
 gi|332014567|gb|EGI56624.1| sensory box protein [Sphingomonas sp. S17]
          Length = 871

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 83/186 (44%), Gaps = 11/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHS----AFISSLGSY---NEKLSIVFFDIDY 138
           SGS L E   S   I++L+  D L+GL N      +   +L          ++   D+D 
Sbjct: 320 SGSDLTEKRRSEAEITRLALFDGLTGLANRQRMKLSLDKTLKQSVNPYRPTALFLMDLDR 379

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILAN 197
           FK +ND  GH  GD ++  ++ +L    G    VGRLGG+EF     G  ++E    LA 
Sbjct: 380 FKAVNDTLGHQAGDLLLQQVARRLEQTVGDVGLVGRLGGDEFQILLPGIDQRERLSALAT 439

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
           D+   +  S+     G  + I  S GIA   H  +    +I  AD  LY AK  GR    
Sbjct: 440 DIIATL--SRPYDIQGVEVTIGCSIGIAIAPHDGDDSQALIRNADLGLYAAKGDGRGVHR 497

Query: 257 CFSDIE 262
            +++  
Sbjct: 498 FYAEAM 503


>gi|183221987|ref|YP_001839983.1| hypothetical protein LEPBI_I2628 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912054|ref|YP_001963609.1| GGDEF domain receiver component of a two- component response
           regulator [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167776730|gb|ABZ95031.1| GGDEF domain receiver component of a two- component response
           regulator [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167780409|gb|ABZ98707.1| Hypothetical protein LEPBI_I2628 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 406

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 94/182 (51%), Gaps = 14/182 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL + Y+   +L  +D L+ L N   F ++L         YN  LS++  DID FK+IND
Sbjct: 121 ELRL-YSETEKLILVDELTRLYNRRHFETALLREFKQSTRYNLNLSLLIIDIDDFKKIND 179

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH +GD+++  ++ ++           R+GGEEFA     S+E +A   A  L +   
Sbjct: 180 TYGHLMGDEILKQIASKISTSLRMEDTACRIGGEEFAIIFPQSNESQALKAAEKLLEACR 239

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             QI+        +TIS G+     K +    +   AD+ALY AK +G+N+++ +S+ + 
Sbjct: 240 TIQISGK-----PVTISGGLVSYPEKVKRCEDMYDLADRALYTAKDTGKNQIIVYSNEKR 294

Query: 264 NT 265
           ++
Sbjct: 295 SS 296


>gi|118590336|ref|ZP_01547739.1| putative sensory box/GGDEF family protein [Stappia aggregata IAM
           12614]
 gi|118437308|gb|EAV43946.1| putative sensory box/GGDEF family protein [Stappia aggregata IAM
           12614]
          Length = 773

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 12/183 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
            S+  E   +  +I  L+  D L+GL N   F + L             +++VF D+D F
Sbjct: 321 ASVAVERDRAERKIRYLANHDVLTGLPNRQEFKTKLEEKVSESDRTGAPVAVVFVDLDNF 380

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA--ILAN 197
           K +ND+FGH +GD+V+  ++++++ V        R GG+EF     G + Q++A      
Sbjct: 381 KFVNDSFGHGIGDQVLMIVAERIMSVHNGAHQAIRFGGDEFVLIVDGETAQKSALNEFMA 440

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            LR  I    I I    S H+T S G A      +  + ++  AD+A++ AK +GR+   
Sbjct: 441 RLRNEI-TKTIQIDD-LSFHVTCSIGAACYPQDADSAAQLLRNADKAMFDAKSAGRDSYK 498

Query: 257 CFS 259
            F 
Sbjct: 499 VFE 501


>gi|107100630|ref|ZP_01364548.1| hypothetical protein PaerPA_01001656 [Pseudomonas aeruginosa PACS2]
          Length = 1120

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 14/189 (7%)

Query: 83  GYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           G I G++L      +       +S  +  D L+GL N + F   L            + +
Sbjct: 659 GEIIGTVLVFQNVTKARAMQRELSYHASHDALTGLFNRTKFEEELQRALANAQERATQHA 718

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           + F D+D FK +ND+ GH  GD ++  LS  L         + RLGG+EF          
Sbjct: 719 LCFIDLDRFKVVNDSAGHAAGDMLLRELSRILADRTRASDTLARLGGDEFGLLLFDCDLA 778

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKK 249
           EA  +A+ L + I + +     G    +  S GI A        S ++ +AD A Y AK 
Sbjct: 779 EAEQVASKLIEQICSVRFPW-EGRLYDVGASIGITALTATSRSTSELMSQADVACYAAKH 837

Query: 250 SGRNRVVCF 258
           +GRNRV  +
Sbjct: 838 AGRNRVSVY 846


>gi|33592539|ref|NP_880183.1| hypothetical protein BP1441 [Bordetella pertussis Tohama I]
 gi|33572185|emb|CAE41731.1| probable membrane protein [Bordetella pertussis Tohama I]
 gi|332381957|gb|AEE66804.1| hypothetical protein BPTD_1425 [Bordetella pertussis CS]
          Length = 385

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 111/238 (46%), Gaps = 17/238 (7%)

Query: 31  FSIFFSIFIATVIFIANIF---LFYIGLTPFYGLEYILVENLSLVIISITI--SLLLGYI 85
           +S +F+   ATV  + +     ++ + +    GL    V N++ + I + +  S+ LG I
Sbjct: 149 YSYWFAGVTATVAALGHALRTAVYGLQIEQTQGLLQSSVWNVAFLAIGVLVMPSMTLGMI 208

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDY 138
              ++ +  ++     + +  D L+GLL+  A         +        L+++  DID 
Sbjct: 209 --MMIHDRMLAER--EREANQDFLTGLLSRKAWWREGERLCARALRTGRPLTLLALDIDR 264

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND  GH  GD V+         +  +   +GRLGGEEF A    +       +A  
Sbjct: 265 FKQVNDQHGHAAGDVVLRHFGSLATALLRSGDVIGRLGGEEFVALLPDTDGDTGVSVAER 324

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           L   +  +  +   G ++  T S G+A+    + +  ++ RAD ALY AK++GR+R+ 
Sbjct: 325 LLASVRATPCSH-GGKALTYTFSGGVAQYRAGDTLPVLVERADAALYAAKQAGRDRIR 381


>gi|326388958|ref|ZP_08210540.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206558|gb|EGD57393.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 804

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 11/174 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYF 139
           GS + E   S  +I+ L+R D L+GL N     ++L     +        + +  D+D F
Sbjct: 349 GSDVTERRESEEQIAYLARFDMLTGLPNRMQLTAALDEAMRRADHWRGCCAFLMIDLDRF 408

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILAND 198
           K +ND  GH VGD+++  ++D+L  + G     GRLGG+EFA     G   +    +A+ 
Sbjct: 409 KAVNDTLGHLVGDRLLKSVADRLRNLVGEYGLCGRLGGDEFAIVLGQGVDNERVHAVADR 468

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
           +  I   SQ       + +I  S G A        + T++  AD ALY AK  G
Sbjct: 469 V--IAGLSQPYTVDQHTFYIGASVGSAIGPRDGATVETLMRNADLALYRAKDGG 520


>gi|209518860|ref|ZP_03267673.1| diguanylate cyclase [Burkholderia sp. H160]
 gi|209500745|gb|EEA00788.1| diguanylate cyclase [Burkholderia sp. H160]
          Length = 522

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 12/173 (6%)

Query: 106 IDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+GL N       L          N+ LS++F D+D+FK  ND +GH  GD+V+  +
Sbjct: 349 TDPLTGLSNRRVLDKRLDDEWRRARRDNKPLSVLFIDVDHFKHFNDTYGHESGDEVLVAV 408

Query: 159 SDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           +D +      +   V R GGEEFA     ++ Q A  +A  +R+ +E+  +         
Sbjct: 409 ADCIASGARRSVDLVARYGGEEFAVVLPDTTAQGAFAVAEKIRRKVESEVVVGGPDAPQA 468

Query: 218 ITISAGIAE----RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           +T+S G A              ++  ADQ LYVAK+ GRNR       E +  
Sbjct: 469 VTVSVGCATALPAATDGGNGLDLLAAADQQLYVAKEQGRNRTRSAQWEERSAA 521


>gi|145298106|ref|YP_001140947.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850878|gb|ABO89199.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 320

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 82/183 (44%), Gaps = 13/183 (7%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           I+   + E  +    ++ LS+ D L+GL N   F S L             +S +  D+D
Sbjct: 130 ITHINITERKLLELDVTHLSQHDPLTGLANRRLFNSFLHNEWRRSMRERTPISFIMLDLD 189

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
            FK  ND+FGH VGD+++  +   L            RLGG+EFA     + ++ A  + 
Sbjct: 190 NFKACNDHFGHQVGDELLRQVGHLLSAFCQRPADLPSRLGGDEFAVVLGNTGKEAALGMG 249

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRN 253
             +R  I+   +N        ++ S GIA +  +        ++  AD ALY AKK G+N
Sbjct: 250 EAIRLGIKELSMNELGDA--RLSASIGIATQLPERVLVSEDELLAAADMALYTAKKEGKN 307

Query: 254 RVV 256
           R  
Sbjct: 308 RCH 310


>gi|150390686|ref|YP_001320735.1| diguanylate cyclase/phosphodiesterase [Alkaliphilus metalliredigens
           QYMF]
 gi|149950548|gb|ABR49076.1| diguanylate cyclase/phosphodiesterase [Alkaliphilus metalliredigens
           QYMF]
          Length = 716

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 117/259 (45%), Gaps = 28/259 (10%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIG-----LTPFYGLEYILV---------------EN 68
           +Y SI+F     ++I +  + LF        + P   L+  +                E 
Sbjct: 193 VYGSIYFIFLSFSMITMIMVLLFLWAQHRNVIKPVDQLDQSIRQIDVEKNAGYRLPSPER 252

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SY 125
            + + +  +I+ +L  I+     +L      I  ++  D L+ L N    +  L    ++
Sbjct: 253 DTFLGLFSSINAMLDEINHYFY-QLKKQEAYIEHIAYHDDLTNLPNRRMLVEKLELEFTH 311

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           N   +I+  D+D FK+IND  GH  GDKV+  +++ L+ + G  + V RLGG+EF     
Sbjct: 312 NRSGAIMLLDLDNFKEINDTLGHVYGDKVLKKVTEALLHIKGENLVVSRLGGDEFLILIK 371

Query: 186 GSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQA 243
              E++   + N  RK+I+  S   +     +++T S GIA    +   +S +I  AD A
Sbjct: 372 E--EEDILKIENYARKVIDLFSNKLLVEDDEVYLTCSIGIALYPSNSNSVSQLIMNADMA 429

Query: 244 LYVAKKSGRNRVVCFSDIE 262
           +Y  K  G+N  + F++  
Sbjct: 430 MYGVKGFGKNNYMFFNEEM 448


>gi|320352699|ref|YP_004194038.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Desulfobulbus propionicus DSM 2032]
 gi|320121201|gb|ADW16747.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfobulbus propionicus DSM 2032]
          Length = 961

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 11/194 (5%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132
           +L  + +   + EL     +I+ ++  D L+ L N +     L            ++++ 
Sbjct: 513 ILYYFATFYEIGELKKREKQIAFMAYHDILTRLPNRAFLERKLAKTIHDAKQQGGRMAVF 572

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQE 191
           F D+D FK IND FGH  GD ++  +S +L  + G    + RLG +EF         E  
Sbjct: 573 FIDLDNFKNINDVFGHHQGDDLLLQVSQRLSSILGGAHTLCRLGSDEFILLMERIDNESF 632

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250
             ++AN ++ +++  +  +     I++  S GI+      +    +I  AD A++ AK+ 
Sbjct: 633 IYLMANRIQAVLK--KPFLLEFKKIYVNASIGISVYPDDGDTAMEMIRSADMAMHRAKRE 690

Query: 251 GRNRVVCFSDIENN 264
           G+NR V F+   + 
Sbjct: 691 GKNRYVLFTKGMHQ 704


>gi|320101645|ref|YP_004177236.1| diguanylate cyclase [Isosphaera pallida ATCC 43644]
 gi|319748927|gb|ADV60687.1| diguanylate cyclase [Isosphaera pallida ATCC 43644]
          Length = 428

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 13/176 (7%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFFDIDYFKQINDNF 146
             +Y    + +  D L+GL N   F+  +      +  +   L+++  D+D+FK +ND  
Sbjct: 161 EEAYRERFRRAVSDPLTGLYNRLYFLEEIYHWVERHPRRSSGLALLLIDLDHFKNVNDEH 220

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN- 205
           GH VGD+V+  +++ L    G    + R GGEEF AA   S    A  LAN +R+ +   
Sbjct: 221 GHAVGDRVLRLVAEVLERALGEEALLSRFGGEEFIAAMEVSDLDAACALANRVREEVARR 280

Query: 206 --SQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVV 256
                       + +T+S G+A    +        +I  AD  L  AK+ GRNRV+
Sbjct: 281 PYRPFGYGGSVQLSLTLSVGVAYLPPRGDPVEPDQMIRAADLCLGQAKRRGRNRVI 336


>gi|300715521|ref|YP_003740324.1| Sensory box-containing diguanylate cyclase [Erwinia billingiae
           Eb661]
 gi|299061357|emb|CAX58466.1| Sensory box-containing diguanylate cyclase [Erwinia billingiae
           Eb661]
          Length = 839

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 91/204 (44%), Gaps = 13/204 (6%)

Query: 70  SLVIISITI-SLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS----SLG 123
           SL+   +T+   + GY  + S + +   +  RI  LS+ D L+GL N           L 
Sbjct: 377 SLIANPVTVNGQIAGYRGTVSDITQEVEAQARIHYLSQHDALTGLPNRVYMSEFLLGRLQ 436

Query: 124 SY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           +       L ++  D+D FK IND +GH  GD V+  +S +L  V      V R GG+EF
Sbjct: 437 AQPTLERPLVLISLDLDNFKPINDTWGHAAGDCVLNEVSHRLRSVLKAGDLVSRQGGDEF 496

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAERCHKE-PISTIIY 238
                  +++  A +A   + +I+  +     G   + +  S GIA           ++ 
Sbjct: 497 VLIVSNLADE--AEIAACCKSLIDELRRPFMLGQHEVFLGASLGIALAPRDAMQAEELLR 554

Query: 239 RADQALYVAKKSGRNRVVCFSDIE 262
            AD ALY +K+ GRNR   ++   
Sbjct: 555 LADIALYKSKQEGRNRWTWYTPEM 578


>gi|222148648|ref|YP_002549605.1| GGDEF domain protein [Agrobacterium vitis S4]
 gi|221735634|gb|ACM36597.1| GGDEF domain protein [Agrobacterium vitis S4]
          Length = 398

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 79/277 (28%), Positives = 114/277 (41%), Gaps = 29/277 (10%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIF-LFYIGLTPFYGL------ 61
           LSI L     + S SP+ F +Y +   + F+  VI +   F +  IGLT   G+      
Sbjct: 109 LSILLPMSVAIYSQSPYMF-VYQNGNVAAFLFFVIALRPRFHIVVIGLTLMCGVLLKTAK 167

Query: 62  -----EYILVENLSLVIISITISLLLGYI------SGSILKELF--ISYNRISQLSRIDC 108
                + I    L    I+I I L LG          + L  L   +   ++   +  D 
Sbjct: 168 LNGSFDDITYSGLVSFYITIAIFLALGAYFLEHADRMNFLNRLRAGLLQKQLEHNAARDE 227

Query: 109 LSGLLNHSAFISSLGSYNE------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           LSGLLN  + +       +       +  +  DID FK  ND  GH  GD+ +  +S  +
Sbjct: 228 LSGLLNRRSLVQVATDLWKGRSPATHVCAIMLDIDDFKLYNDVHGHLEGDECLRTVSQCI 287

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI-TIS 221
               G   F  R GGEE       +    A  +A  +R+ IE   I         + T S
Sbjct: 288 RDNAGEKGFAFRYGGEEMLVLLPNTDVDAACAIAEAIRRAIECMNIPHLGKGRGQVTTAS 347

Query: 222 AGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            G+AE       +  ++ RAD ALY AK+SGRNRV  
Sbjct: 348 LGVAEGPTATVSLEDLLNRADAALYEAKRSGRNRVCV 384


>gi|45441313|ref|NP_992852.1| PAS/PAC domain-containing protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108807120|ref|YP_651036.1| hypothetical protein YPA_1124 [Yersinia pestis Antiqua]
 gi|145598659|ref|YP_001162735.1| hypothetical protein YPDSF_1373 [Yersinia pestis Pestoides F]
 gi|149366297|ref|ZP_01888332.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Yersinia
           pestis CA88-4125]
 gi|153948300|ref|YP_001401343.1| sensory box-containing diguanylate cyclase [Yersinia
           pseudotuberculosis IP 31758]
 gi|162419124|ref|YP_001606158.1| putative sensory box-containing diguanylate cyclase [Yersinia
           pestis Angola]
 gi|165927988|ref|ZP_02223820.1| putative sensory box-containing diguanylate cyclase [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165938759|ref|ZP_02227314.1| putative sensory box-containing diguanylate cyclase [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166010849|ref|ZP_02231747.1| putative sensory box-containing diguanylate cyclase [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166210728|ref|ZP_02236763.1| putative sensory box-containing diguanylate cyclase [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167402174|ref|ZP_02307649.1| putative sensory box-containing diguanylate cyclase [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167420072|ref|ZP_02311825.1| putative sensory box-containing diguanylate cyclase [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167469684|ref|ZP_02334388.1| putative sensory box-containing diguanylate cyclase [Yersinia
           pestis FV-1]
 gi|229894192|ref|ZP_04509375.1| hypothetical protein YPS_1962 [Yersinia pestis Pestoides A]
 gi|229897125|ref|ZP_04512281.1| hypothetical protein YPH_4141 [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229897852|ref|ZP_04513003.1| hypothetical protein YPF_2264 [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|294504076|ref|YP_003568138.1| PAS/PAC domain protein [Yersinia pestis Z176003]
 gi|45436173|gb|AAS61729.1| PAS/PAC domain [Yersinia pestis biovar Microtus str. 91001]
 gi|108779033|gb|ABG13091.1| diguanylate cyclase with PAS/PAC sensor [Yersinia pestis Antiqua]
 gi|145210355|gb|ABP39762.1| diguanylate cyclase with PAS/PAC sensor [Yersinia pestis Pestoides
           F]
 gi|149292710|gb|EDM42784.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Yersinia
           pestis CA88-4125]
 gi|152959795|gb|ABS47256.1| putative sensory box-containing diguanylate cyclase [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351939|gb|ABX85887.1| putative sensory box-containing diguanylate cyclase [Yersinia
           pestis Angola]
 gi|165913373|gb|EDR31995.1| putative sensory box-containing diguanylate cyclase [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165920045|gb|EDR37346.1| putative sensory box-containing diguanylate cyclase [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165990193|gb|EDR42494.1| putative sensory box-containing diguanylate cyclase [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166207908|gb|EDR52388.1| putative sensory box-containing diguanylate cyclase [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166961767|gb|EDR57788.1| putative sensory box-containing diguanylate cyclase [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167048449|gb|EDR59857.1| putative sensory box-containing diguanylate cyclase [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|229688893|gb|EEO80958.1| hypothetical protein YPF_2264 [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229693462|gb|EEO83511.1| hypothetical protein YPH_4141 [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229703590|gb|EEO90606.1| hypothetical protein YPS_1962 [Yersinia pestis Pestoides A]
 gi|262361737|gb|ACY58458.1| PAS/PAC domain protein [Yersinia pestis D106004]
 gi|262366126|gb|ACY62683.1| PAS/PAC domain protein [Yersinia pestis D182038]
 gi|294354535|gb|ADE64876.1| PAS/PAC domain protein [Yersinia pestis Z176003]
          Length = 693

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 8/179 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDI 136
             +    +         +   +  D L+GL+N       L     +L+      + + D+
Sbjct: 511 AVVVFQDVTRARHEQRALQYQASHDMLTGLINRRRLEERLTLAINQLAHDGQHILCYVDL 570

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK +NDN GH  GD V+  ++  +         V RLGG+EFA        + AA + 
Sbjct: 571 DYFKDVNDNAGHEAGDMVLRMVAQTMQQAVRENDIVARLGGDEFAIVLFNCPSKSAAEIL 630

Query: 197 NDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +   I   Q +   G S  +T S G I      E  S  +  AD A Y AK +GRN+
Sbjct: 631 EQVVADIAAIQFHWH-GQSYVLTASLGAIPLTQQTESASQAMRLADIACYKAKHAGRNQ 688


>gi|330500946|ref|YP_004377815.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328915232|gb|AEB56063.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 383

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/191 (29%), Positives = 92/191 (48%), Gaps = 10/191 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GS 124
           V +++  + ++ +  G +L       + + Q +  D L+GL N  A +  L         
Sbjct: 186 VSVALGAATIIMFSFGLVLLSRERIESELRQTALRDTLTGLPNRLAILEQLTDELERARR 245

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
            +  LSI   D+D+FK IND+ GH VGD V+   ++ L         +GR GGEEF    
Sbjct: 246 QHTPLSIAMLDLDHFKLINDSHGHLVGDAVLRHCANHLQQRLRRNDSIGRYGGEEFLLVL 305

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQ 242
            G+    A  L + LR+ +      I    +I ++ SAG+  +     E I+ ++ +AD 
Sbjct: 306 PGTDANGALELVDQLRQSLTQHPAQI-DSKTIALSFSAGVYGSSNSIAEDITGMLLKADT 364

Query: 243 ALYVAKKSGRN 253
           ALY AK +GRN
Sbjct: 365 ALYRAKHAGRN 375


>gi|291566666|dbj|BAI88938.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 592

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/270 (21%), Positives = 116/270 (42%), Gaps = 21/270 (7%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NL 69
           +C E           +I+ S    +F     F +    +   +T  + +E +LV    +L
Sbjct: 67  VCKELKNNQNLAKVPVIFLSALNDVFDKVKAFGSGGVDY---ITKPFQMEEVLVRVENHL 123

Query: 70  SLVIISITISLLLGYISGSI---LKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
            L      I  L   +   +    ++L ++  ++ +++  D L+ L N + F+  +    
Sbjct: 124 MLKAAEKKILELNTELEARVKERTQQLEMANAKLLEMALHDPLTRLPNRTLFMEQVSGAM 183

Query: 123 ----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                  ++  +++F D D FK +ND+ GH VGD+++  + D++  +      + RLGG+
Sbjct: 184 NNLKEGNSQGFAVLFMDCDRFKVVNDSLGHTVGDELLIAIGDRIQKILKNNDLLSRLGGD 243

Query: 179 EFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTI 236
           EFA      +E E    LA+ + +++ +    I S   I I +S G+       +    +
Sbjct: 244 EFAIIVHDVNEIEPVRNLADSILEVM-SCPFQIYS-REIFINMSIGVVLSNTDYQQPEHL 301

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           +  AD A+Y AK  GR +   F    +   
Sbjct: 302 LRDADTAMYRAKALGRGQYHIFDPAMHKEA 331


>gi|237809101|ref|YP_002893541.1| diguanylate cyclase [Tolumonas auensis DSM 9187]
 gi|237501362|gb|ACQ93955.1| diguanylate cyclase [Tolumonas auensis DSM 9187]
          Length = 242

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 9/191 (4%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFF 134
           +  I   +  ++    + + + ++ D L+GL N         A    L   +    ++  
Sbjct: 50  IARIGDLMQAQIMDLNSELDKRAKTDPLTGLFNRGGLYPQMFALKKQLELNHSCFGVLLL 109

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+DYFK++ND FGH  GD ++  ++  L  +  T     R GGEEF       SE+    
Sbjct: 110 DLDYFKEVNDQFGHLQGDHLLISVAAILQSICSTQGVCARWGGEEFLILMPDCSEKSLHT 169

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +A ++ + I +  + +      +++ S G+      E I   I +AD A+Y AK  GR++
Sbjct: 170 MAENIMQAIRS--VPLPGNDERYLSASIGVYFCREAEMIDDSIRKADLAMYKAKAQGRDQ 227

Query: 255 VVCFSDIENNT 265
           +V +S     T
Sbjct: 228 LVTYSPELGET 238


>gi|218667425|ref|YP_002427424.1| sensory box-containing diguanylate cyclase, putative
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519638|gb|ACK80224.1| sensory box-containing diguanylate cyclase, putative
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 841

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 11/181 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            + E     + ++QLS  D L+GL N  A        ++    +   LS+V  D+D FK 
Sbjct: 283 DVTERHRLMDELTQLSLSDPLTGLPNRRALDTELGKAMARADRHEHLLSVVMIDLDGFKP 342

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLR 200
           +ND  GH  GD V+  +  +L        FV RLGG+EF       +  +E  ++   + 
Sbjct: 343 VNDTCGHEAGDMVLRTIGQRLRKGLRGTDFVARLGGDEFVLLLENCTALEEIEVVMRKIG 402

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCF 258
           ++I    I +       I +SAGI      +      ++  ADQALY +K    +RV  +
Sbjct: 403 EMIRQ-PIELPDKSRAEIDLSAGICLYPFGDSHNPDALLRYADQALYESKNHKADRVHYW 461

Query: 259 S 259
           +
Sbjct: 462 T 462


>gi|186895063|ref|YP_001872175.1| PAS/PAC sensor-containing diguanylate cyclase [Yersinia
           pseudotuberculosis PB1/+]
 gi|186698089|gb|ACC88718.1| diguanylate cyclase with PAS/PAC sensor [Yersinia
           pseudotuberculosis PB1/+]
          Length = 693

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 8/179 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDI 136
             +    +         +   +  D L+GL+N       L     +L+      + + D+
Sbjct: 511 AVVVFQDVTRARHEQRALQYQASHDMLTGLINRRRLEERLTLAINQLAHDGQHILCYVDL 570

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK +NDN GH  GD V+  ++  +         V RLGG+EFA        + AA + 
Sbjct: 571 DYFKDVNDNAGHEAGDMVLRMVAQTMQQAVRENDIVARLGGDEFAIVLFNCPSKSAAEIL 630

Query: 197 NDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +   I   Q +   G S  +T S G I      E  S  +  AD A Y AK +GRN+
Sbjct: 631 EQVVADIAAIQFHWH-GQSYVLTASLGAIPLTQQTESASQAMRLADIACYKAKHAGRNQ 688


>gi|167580272|ref|ZP_02373146.1| EAL/GGDEF domain protein [Burkholderia thailandensis TXDOH]
          Length = 772

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 103/208 (49%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVIIS-ITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +Y    N+ L++ S IT+++L  + ++  ++ +L      ++QL+  D L+GL N  A +
Sbjct: 278 DYHHTRNVYLLMTSFITLAMLAFFGVATGLIGKLLGREREMTQLAEFDLLTGLANRYATL 337

Query: 120 SSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            SL       S   +L+I+F D+D FK +ND  GH  GD V+   + +L         + 
Sbjct: 338 RSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVTNEGALA 397

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EF     G + E+ A  LA  + ++    +     G S  +  S GIA      E
Sbjct: 398 RIGGDEFVVVVKGENVERRAERLAEAIVRMFA--EPFDVRGSSFVLHASIGIALHSVENE 455

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +AD A+Y AK +G+N    ++
Sbjct: 456 SEIDLLKKADLAMYSAKDAGKNCYQFYA 483


>gi|297582987|ref|YP_003698767.1| GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Bacillus selenitireducens MLS10]
 gi|297141444|gb|ADH98201.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Bacillus
           selenitireducens MLS10]
          Length = 1011

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 87/187 (46%), Gaps = 12/187 (6%)

Query: 84  YISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFD 135
            IS ++ + EL      I  ++  D L+GL N   F + L             L++++ D
Sbjct: 561 LISTALERHELRQKELEIRHMAYFDGLTGLPNRQHFQTLLREQIAFVDEVEMALAVLYVD 620

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF-AAAALGSSEQEAAI 194
           +D FK +ND +GH  GDK++  + +++       + + R GG+EF    +     +EA+ 
Sbjct: 621 LDLFKHVNDTWGHSAGDKLLTMVGERMANGVDHRVVISRFGGDEFTMMLSPVQDRKEASD 680

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           +   L+ +    +     G  ++I+ S GI+    +      +I  AD A+Y AK  GRN
Sbjct: 681 VVEVLQDLFR--KPFDLEGNEVYISCSIGISIYPNNGSTTEDLIKNADMAMYEAKSKGRN 738

Query: 254 RVVCFSD 260
               +++
Sbjct: 739 AYAFYTE 745


>gi|119946538|ref|YP_944218.1| diguanylate cyclase [Psychromonas ingrahamii 37]
 gi|119865142|gb|ABM04619.1| diguanylate cyclase [Psychromonas ingrahamii 37]
          Length = 266

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 105/246 (42%), Gaps = 18/246 (7%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS--LLLGYISGSILKEL 93
            +F    I +   F+  + +  ++    I  E +  V +    S   +  ++    + E 
Sbjct: 19  VVFRIAGIVLVIEFMVMLIIGHYHNNLNIYAEAILDVALLTLFSTPFIFYWVIKPFVDER 78

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNF 146
            ++   +S ++  D L+ L N          +         + +++  D+D FK IND +
Sbjct: 79  DVTLAELSDMAHSDPLTKLPNRRHLELHFDQFIAGSLKKSIRGALMLVDLDGFKLINDIY 138

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI------LANDLR 200
           GH  GD V+  ++ +L         V RLGG+EF       +  E++       +A  L 
Sbjct: 139 GHDAGDAVLIEVALRLNATVREEDIVSRLGGDEFVILIHHINSVESSATDTISGIAEKLV 198

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           KII   +     G  + +  S G+     +E    T+I  AD+A+Y AK++G+ R V F 
Sbjct: 199 KII--MEPIDYKGNKLQVGASIGVRMLEFEEIDTETLIQDADKAMYHAKQAGKGRAVFFE 256

Query: 260 DIENNT 265
           +I+  T
Sbjct: 257 EIDQAT 262


>gi|110632976|ref|YP_673184.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Mesorhizobium sp. BNC1]
 gi|110283960|gb|ABG62019.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Chelativorans sp. BNC1]
          Length = 574

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 11/181 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S +     +  R    +  D L+GL N       L            +L++   D+D FK
Sbjct: 117 SDITAYREAEARARYHAHHDSLTGLANRMHLGERLQEELIEARAKGTQLALFLLDLDGFK 176

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDL 199
           Q+ND +GH  GD+++  ++ +L  +      V RLGG+EF    +   +  A   LA  +
Sbjct: 177 QVNDRYGHAAGDELLQIIATRLKRIVRGRDVVARLGGDEFCVVQVEPDDSSAVDALAERI 236

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
             ++  S+  ++   +  +T S GI+           ++  AD ALY  K SGR     +
Sbjct: 237 LGVL--SEPIVAEWGTARVTASIGISAFPGDAVTQEDLLRYADIALYSVKGSGRASYARY 294

Query: 259 S 259
            
Sbjct: 295 D 295


>gi|324113244|gb|EGC07219.1| GGDEF domain-containing protein [Escherichia fergusonii B253]
          Length = 460

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   ++      +D L+ LLN           I+     +  LS +  D+D FK
Sbjct: 281 TLLRELFEEVSK--HEVGMDVLTKLLNRRFLPTIFKREIAHANRVSTPLSTLIIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE +   +A  +R
Sbjct: 339 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFVIVLTEASENDTLRIAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 399 SRVEKTKLKAANGDDIPLSLSIGAAMFNGHPDYERLIQMADEALYIAKRRGRNRVELW 456


>gi|325272741|ref|ZP_08139091.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas sp. TJI-51]
 gi|324102125|gb|EGB99621.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas sp. TJI-51]
          Length = 896

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 88/184 (47%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + +  ++  RI +L+  D L+ L N  AFI SL           + ++  DID FK+IN
Sbjct: 453 DITQTKLAQQRIERLAYTDNLTNLGNRPAFIRSLDERFARDGEHSMCLLLVDIDNFKRIN 512

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++  L+ +L     +   + R    EFA     +  ++   +A  L + +
Sbjct: 513 DSLGHQTGDKLLISLARRLRNSLHSGGILARFASNEFAVLLDNTILEDGQGVALQLLRTL 572

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I++T S G+A    H    ++++  A  AL+ AK +G+++V  F+++ 
Sbjct: 573 DKPMF--VDNQLINVTASVGLAYAPLHGSDPASLMKNAGLALHKAKANGKHQVQVFTEVL 630

Query: 263 NNTC 266
           N   
Sbjct: 631 NAEA 634


>gi|307946775|ref|ZP_07662110.1| signal transduction protein ggdef domain protein [Roseibium sp.
           TrichSKD4]
 gi|307770439|gb|EFO29665.1| signal transduction protein ggdef domain protein [Roseibium sp.
           TrichSKD4]
          Length = 250

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 114/227 (50%), Gaps = 3/227 (1%)

Query: 32  SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK 91
           +I+ ++F    + + + F  +I        + ++   L   II+  I++ +  ++ +I+K
Sbjct: 11  AIYTAVFTLLAV-LGSTFSVFIMFAMTGQYQAMVGPLLFTAIIASLIAVPISIVALNIVK 69

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-SLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
            +  +  ++    + D L+G+L  S F+      +++  ++   D D+FKQIND +GH V
Sbjct: 70  TVNKAVAKLEDFVKFDQLTGVLARSYFLEPVRQRFSDGGALFLVDADHFKQINDTYGHDV 129

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD  +  +   L         VGR+GGEEFA    G  +QE    A  +R  I  +   +
Sbjct: 130 GDMALRLIGQTLNFNVRKSDLVGRVGGEEFAIFLKGVGDQEIVTRAEQIRTAIAENG-KV 188

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +G  I++T+S GIA+      ++ I   AD+ LY AK +GRN+ V 
Sbjct: 189 IAGHEINLTVSIGIAKIKKGSTLTLIFKEADENLYSAKNAGRNQFVY 235


>gi|294138971|ref|YP_003554949.1| GGDEF domain-containing protein [Shewanella violacea DSS12]
 gi|293325440|dbj|BAJ00171.1| GGDEF domain protein [Shewanella violacea DSS12]
          Length = 401

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 68/236 (28%), Positives = 105/236 (44%), Gaps = 36/236 (15%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQL 103
            +    L  +G+  FY   Y   +   L +  +  SL + Y+   ++   F        L
Sbjct: 180 LVNTAILTTLGIWVFY---YFQPDAFPLAV--LLSSLAVIYLFTILIDSYF--------L 226

Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           +  D L+GL +  A  + + S   K S+   DID+FK+ ND +GH VGD+V+  ++ ++ 
Sbjct: 227 AYRDELTGLASRRALYNLVLSLGRKYSVAMLDIDHFKKFNDTYGHDVGDQVLKLVAAKMA 286

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG---------- 213
            V G    V R GGEEF       + Q       D+R+ IE+  I +             
Sbjct: 287 QVSGGG-KVFRYGGEEFTIVFPRKNAQTILDDLEDVRESIEDYSIVLREDKRTKKSNSQA 345

Query: 214 ------------PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                        ++ +TIS G+AER   E     + RADQALY AKK GRN++  
Sbjct: 346 KARRSKSKNAGKKTVSVTISIGVAERHSGESFDQALKRADQALYRAKKRGRNQICI 401


>gi|258512579|ref|YP_003186013.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479305|gb|ACV59624.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 799

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 9/184 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDID 137
           ++    +    ++  R++ L+  D L+ L N   F + +          +++ I+F D+D
Sbjct: 357 FLVARDVTAEKVAAERMNYLAFHDTLTQLANRRHFEARVDDFIRDARPGDEMQILFVDLD 416

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND  GH  GDK++  ++  L  V G    V R+GG+EF         + A  +A+
Sbjct: 417 RFKSVNDTLGHEFGDKLLQEIARILKEVAGEDALVARMGGDEFTITLFRQPMERAVAVAD 476

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +   +    + +   P +++T S GIA    H      ++  AD A+Y AK  GR+   
Sbjct: 477 AILNRLRK-PVRVEDRP-LYMTASVGIASFPRHGVTRDMLLRHADLAMYTAKAEGRSTYR 534

Query: 257 CFSD 260
            F +
Sbjct: 535 LFEE 538


>gi|217969943|ref|YP_002355177.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
 gi|217507270|gb|ACK54281.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
          Length = 472

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 9/167 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++ +L+  D L+GL N   F   LG           +L ++ FD+D FK IND+FGH  G
Sbjct: 283 QLVELAERDELTGLYNRRRFHEELGRMLADAGRRGSRLGLLAFDLDGFKPINDSFGHQAG 342

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  L+ +L         + R+GG+EFA      S +    LA+ L + +   +  + 
Sbjct: 343 DEVLVRLARELGRTVRRNETLFRIGGDEFALLVPEGSTEGLCELAHRLVETVGAMRF-VF 401

Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            G +  +T S GIA           ++  AD+ALY AK  GRNR   
Sbjct: 402 EGRAARVTASVGIARFPDNAREGEALVAAADEALYRAKSEGRNRAAV 448


>gi|218548932|ref|YP_002382723.1| diguanylate cyclase YddV [Escherichia fergusonii ATCC 35469]
 gi|218356473|emb|CAQ89096.1| putative diguanylate cyclase YddV [Escherichia fergusonii ATCC
           35469]
          Length = 463

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   ++      +D L+ LLN           I+     +  LS +  D+D FK
Sbjct: 284 TLLRELFEEVSK--HEVGMDVLTKLLNRRFLPTIFKREIAHANRVSTPLSTLIIDVDKFK 341

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE +   +A  +R
Sbjct: 342 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFVIVLTEASENDTLRIAERIR 401

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 402 SRVEKTKLKAANGDDIPLSLSIGAAMFNGHPDYERLIQMADEALYIAKRRGRNRVELW 459


>gi|170024695|ref|YP_001721200.1| PAS/PAC sensor-containing diguanylate cyclase [Yersinia
           pseudotuberculosis YPIII]
 gi|169751229|gb|ACA68747.1| diguanylate cyclase with PAS/PAC sensor [Yersinia
           pseudotuberculosis YPIII]
          Length = 693

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 8/179 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDI 136
             +    +         +   +  D L+GL+N       L     +L+      + + D+
Sbjct: 511 AVVVFQDVTRARHEQRALQYQASHDMLTGLINRRRLEERLTLAINQLAHDGQHILCYVDL 570

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK +NDN GH  GD V+  ++  +         V RLGG+EFA        + AA + 
Sbjct: 571 DYFKDVNDNAGHEAGDMVLRMVAQTMQQAVRENDIVARLGGDEFAIVLFNCPSKSAAEIL 630

Query: 197 NDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +   I   Q +   G S  +T S G I      E  S  +  AD A Y AK +GRN+
Sbjct: 631 EQVVADIAAIQFHWH-GQSYVLTASLGAIPLTQQTESASQAMRLADIACYKAKHAGRNQ 688


>gi|209549519|ref|YP_002281436.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535275|gb|ACI55210.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 761

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 78/178 (43%), Gaps = 11/178 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           +EL  +   I +L+  D L+ L N       L   + +       L+I+  D+D FKQIN
Sbjct: 300 RELEAAKESIERLALHDYLTSLPNRRYLDKMLDERSAECRAKGLGLAILHIDLDRFKQIN 359

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKI 202
           D  GH  GD ++   +  L        FV R+GG+EF     +  + ++ A LA  + + 
Sbjct: 360 DTLGHRAGDAMLQHAASVLRNSVRAADFVARIGGDEFVILCTVDPASKKIASLAERIIR- 418

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            E  +     G       S GIA           ++  AD ALY AK  GRNR+  FS
Sbjct: 419 -ELRKPVRYEGHDCRFGASIGIAVDSGPTLDAKQMLLDADIALYRAKGLGRNRLEFFS 475


>gi|146307450|ref|YP_001187915.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
 gi|145575651|gb|ABP85183.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
          Length = 683

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 13/204 (6%)

Query: 74  ISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------G 123
           I++  S+L   +      + + L  +   +++L+  D L+ L N       +        
Sbjct: 230 IALLTSILDARLEARTALLSQSLARANAELTELALHDGLTKLPNRLLLEDRIGQSILKVQ 289

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                 +++F D+D FK +ND FGH +GD+++  ++ +L         + R+GG+EF   
Sbjct: 290 RNGGHFALLFMDLDGFKPVNDAFGHHIGDQLLVAVAQRLRANLRAQDSLARIGGDEFVLL 349

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQ 242
           A      +AA +A  +  ++  SQ        + ++ S GIA           ++  AD 
Sbjct: 350 AELRQADDAASVAGQVVSLL--SQPFRVDEHELRVSTSVGIAVYPGDGSNQQELLINADA 407

Query: 243 ALYVAKKSGRNRVVCFSDIENNTC 266
           A+Y AK  G+N    F    N   
Sbjct: 408 AMYHAKGLGKNGYSFFERSMNTNA 431


>gi|163938551|ref|YP_001643435.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus weihenstephanensis KBAB4]
 gi|229165570|ref|ZP_04293346.1| Sensory box/GGDEF [Bacillus cereus AH621]
 gi|163860748|gb|ABY41807.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus weihenstephanensis KBAB4]
 gi|228617897|gb|EEK74946.1| Sensory box/GGDEF [Bacillus cereus AH621]
          Length = 567

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++     +     +++FD+D FK +ND  G
Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNKMIAEKIEFGMIYFDLDRFKLVNDTLG 192

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       +  E   LA  +    +   
Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKTHTHDEMRQLATSVLSCFQA-- 250

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 251 PFMLEGHEVYISASLGLCSYPQDGKDVETLLKNSDLAMYSAKEQGRNAACFFTDE 305


>gi|116049113|ref|YP_792085.1| putative sensor protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296390448|ref|ZP_06879923.1| putative sensor protein [Pseudomonas aeruginosa PAb1]
 gi|313106155|ref|ZP_07792408.1| hypothetical protein PA39016_000210007 [Pseudomonas aeruginosa
           39016]
 gi|115584334|gb|ABJ10349.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310878910|gb|EFQ37504.1| hypothetical protein PA39016_000210007 [Pseudomonas aeruginosa
           39016]
          Length = 1120

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 14/189 (7%)

Query: 83  GYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           G I G++L      +       +S  +  D L+GL N + F   L            + +
Sbjct: 659 GEIIGTVLVFQNVTKARAMQRELSYHASHDALTGLFNRTKFEEELQRALANAQERATQHA 718

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           + F D+D FK +ND+ GH  GD ++  LS  L         + RLGG+EF          
Sbjct: 719 LCFIDLDRFKVVNDSAGHAAGDMLLRELSRILADRTRASDTLARLGGDEFGLLLFDCDLA 778

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKK 249
           EA  +A+ L + I + +     G    +  S GI A        S ++ +AD A Y AK 
Sbjct: 779 EAEQVASKLIEQICSVRFPW-EGRLYDVGASIGITALTATSRSTSELMSQADVACYAAKH 837

Query: 250 SGRNRVVCF 258
           +GRNRV  +
Sbjct: 838 AGRNRVSVY 846


>gi|329916736|ref|ZP_08276411.1| Putative diguanylate cyclase [Oxalobacteraceae bacterium IMCC9480]
 gi|327544666|gb|EGF30118.1| Putative diguanylate cyclase [Oxalobacteraceae bacterium IMCC9480]
          Length = 436

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 81/177 (45%), Gaps = 9/177 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             + +   +  ++   +  D L+GLLN   F                 L ++  D D+FK
Sbjct: 259 RDINQHANASEKMMHATSCDDLTGLLNRRVFFDKAETELNRWRRSKRPLCVLVIDADHFK 318

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND FGH VGD V+  L+  +         V R+GGEEFA     +   +A  LA  +R
Sbjct: 319 SINDRFGHDVGDSVLKALAVAIKHCVRQLDIVSRIGGEEFAVLLPYTGIDDAEDLAERVR 378

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             + N  +   +   I +TIS G+AE       +  ++  AD ALY AK +GRN+V 
Sbjct: 379 HCVANLVVE-PAELDIALTISVGVAEMNDSISDMRGLVKAADGALYCAKNAGRNQVH 434


>gi|295689530|ref|YP_003593223.1| diguanylate cyclase [Caulobacter segnis ATCC 21756]
 gi|295431433|gb|ADG10605.1| diguanylate cyclase [Caulobacter segnis ATCC 21756]
          Length = 353

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/181 (32%), Positives = 86/181 (47%), Gaps = 9/181 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           S S ++ L     ++ + +  D L+ L N  AF   L             L +   DID+
Sbjct: 162 STSEVERLREHLEQVRREATTDGLTNLANRKAFDEELDRACAEADRQGTPLCLAVLDIDH 221

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK  ND +GH  GD+VI +++  +  V   P F  R GGEEFA      +    A    +
Sbjct: 222 FKGFNDTWGHQTGDQVIRYVASVIGRVAAPPRFAARYGGEEFAMIFPRENSAVIAASLEE 281

Query: 199 LRKIIENSQINISSGPS--IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +R  + +  +   S       ITIS+G AER   E   +I+ RAD ALY +K++GRNRV 
Sbjct: 282 IRVEVSSRMLKRRSTNEDLGAITISSGFAERRPGESGHSIMERADAALYASKRNGRNRVT 341

Query: 257 C 257
            
Sbjct: 342 A 342


>gi|325982310|ref|YP_004294712.1| diguanylate cyclase [Nitrosomonas sp. AL212]
 gi|325531829|gb|ADZ26550.1| diguanylate cyclase [Nitrosomonas sp. AL212]
          Length = 266

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 82/178 (46%), Gaps = 7/178 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDY 138
           +   ++ L     ++  L + D ++G  N                   + L +V  D+D 
Sbjct: 85  AEQKIELLKDELEQLRGLVQTDQMTGAFNRRGLDDIFKREAARADRNAQPLGVVLIDLDN 144

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+INDNFGH  GD V+  L             V R GGEEF         ++A  +   
Sbjct: 145 FKKINDNFGHQYGDSVLINLVTVAKETLRPSDIVARFGGEEFVILLPEVELEDALTIIQR 204

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           L+  +E +        SI IT SAG+A R   E  +++I RAD+ALY AK++G+NR +
Sbjct: 205 LQNNLERNFSLQIDNESIPITFSAGVALRSFGEHQNSVISRADKALYQAKRTGKNRAI 262


>gi|154248337|ref|YP_001419295.1| diguanylate cyclase [Xanthobacter autotrophicus Py2]
 gi|154162422|gb|ABS69638.1| diguanylate cyclase [Xanthobacter autotrophicus Py2]
          Length = 401

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 94/204 (46%), Gaps = 17/204 (8%)

Query: 63  YILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
           Y LV  +S  I+ +   L+L   S  ++++E  I+       +  D LSGLLN   F S 
Sbjct: 192 YALVSQVSSGILFLATGLILLLKSVQAVVRESQIA-------AETDVLSGLLNRRGFDSR 244

Query: 122 LGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                       ++++  D+D+FK +ND FGH  GD  I   +  L         + RLG
Sbjct: 245 AERLIAQAKGRPVALLILDLDHFKSVNDRFGHSTGDAAIRAFAVLLSRTVPPSALIARLG 304

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236
           GEEFA     +  + A + A  +R        +        +T+S G+A       +   
Sbjct: 305 GEEFAVLLDRTGLEAARLQAEAIRLA----TFHHQEVGLPKLTVSIGVAAPASSHLLPEA 360

Query: 237 IYRADQALYVAKKSGRNRVVCFSD 260
           + RAD ALY AK++GRNRV C ++
Sbjct: 361 MERADAALYEAKRAGRNRVCCAAE 384


>gi|320107292|ref|YP_004182882.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Terriglobus
           saanensis SP1PR4]
 gi|319925813|gb|ADV82888.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Terriglobus saanensis SP1PR4]
          Length = 695

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 9/173 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
            +   +  D L+GL N       +            K++++F D+D FK IND+ GHP G
Sbjct: 263 EMIHSAEHDFLTGLPNRMLLHDRVSQAIALAIRQQHKVALLFIDVDGFKHINDSLGHPAG 322

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           DK++  L+ +LV    +   V R GG+EF          E   +A   + +   +  ++ 
Sbjct: 323 DKLLQSLAHRLVGCVRSSDTVSRQGGDEFVVLLSSVRLAEDTAVAAK-KLLAAIADPHLV 381

Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
               +H+T S G++          T+I  AD A+Y AK  GR     F  + N
Sbjct: 382 DRRDLHVTASIGVSVYPDDGTDAETLIKNADTAMYQAKAHGRQGYQFFKAVMN 434


>gi|293607687|ref|ZP_06690018.1| GGDEF domain protein [Achromobacter piechaudii ATCC 43553]
 gi|292813825|gb|EFF72975.1| GGDEF domain protein [Achromobacter piechaudii ATCC 43553]
          Length = 430

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/201 (29%), Positives = 88/201 (43%), Gaps = 25/201 (12%)

Query: 82  LGYISGSILKELFISY-NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFK 140
           L  +S + L  L IS  +    ++  D L+GL    A    L       ++   D+D+FK
Sbjct: 222 LALMSAAALTALSISLAHEGFHMAFRDELTGLPGRRALNERLQRMGRVYTLAMADVDHFK 281

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
             ND  GH VGD+V+  ++ QL  V G      R GGEEF     G +  E+      +R
Sbjct: 282 AFNDTHGHDVGDQVLRMVASQLRRVPGGG-QAYRYGGEEFTLVFPGKTAAESLPHLETVR 340

Query: 201 KIIENSQINISSGPS----------------------IHITISAGIAERCHK-EPISTII 237
           + IE  Q+ +   P+                      + +T+S G+AER         +I
Sbjct: 341 RAIEAYQMRLRDKPARPKADQLGQRRRGVRGGRNSRPLRVTVSIGLAERGDALRAPDAVI 400

Query: 238 YRADQALYVAKKSGRNRVVCF 258
             ADQALY AK  GRN+V  +
Sbjct: 401 KAADQALYKAKDGGRNQVCAY 421


>gi|237507329|ref|ZP_04520044.1| eal/ggdef domain protein [Burkholderia pseudomallei MSHR346]
 gi|234999534|gb|EEP48958.1| eal/ggdef domain protein [Burkholderia pseudomallei MSHR346]
          Length = 688

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/215 (29%), Positives = 99/215 (46%), Gaps = 15/215 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRIS----QLSRIDCLSGLLNHSAFIS 120
           L   ++L  ++I I  L+          L  S +R+S    +++  D L+ L N      
Sbjct: 214 LAATVALFTVAILIVALILSHFDVRTTLLAGSVSRLSGQIVRMAAFDTLTDLPNRRTLNE 273

Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            LG           KL+I+F D+D FK IN + GHP GD+V+   S +L+        V 
Sbjct: 274 HLGRALAAARARGGKLAILFMDLDGFKTINGSLGHPAGDEVLKTFSQRLLCCVRDGDIVA 333

Query: 174 RLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           RLGG+EF       SS+ EAA +A D+ + +   + N   G ++ +T S GIA      +
Sbjct: 334 RLGGDEFVVLLESVSSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGD 391

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              T++  AD A+Y AK+ GR     F    +   
Sbjct: 392 TADTLLRHADAAMYAAKRGGRCTYRFFEATMDEAA 426


>gi|149189327|ref|ZP_01867613.1| hypothetical protein VSAK1_10383 [Vibrio shilonii AK1]
 gi|148836886|gb|EDL53837.1| hypothetical protein VSAK1_10383 [Vibrio shilonii AK1]
          Length = 934

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 9/187 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISS------LGSYNEKLSIVFFDIDYFKQ 141
           + +  L     ++  L+  D L+ L N +  ++          +   ++++F D+D FK+
Sbjct: 488 TDISRLKEQEKQLELLALYDPLTKLPNRNLLVTKVSELLKFNEFGRYMAVLFIDLDEFKK 547

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           IND+FGH VGD+ +  L+  L     +   + R GG+EF        SE +    A+ L 
Sbjct: 548 INDSFGHEVGDEALKLLASTLSKNIPSNDILVRWGGDEFIIVLNNVRSEDKVKSYASKLL 607

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCF 258
            II   +           + S G+          I  +I +AD A+Y +K  G N +  F
Sbjct: 608 NIISTMRFKTDLIHPQPFSASIGVTMTEADSVTDIEHLIRQADLAMYESKLQGGNSISFF 667

Query: 259 SDIENNT 265
           +   + +
Sbjct: 668 NPEHDRS 674


>gi|28875454|gb|AAO59943.1| putative sensor kinase [uncultured bacterium]
          Length = 237

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 11/177 (6%)

Query: 93  LFISYNRIS----QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           L ++  R+     + +  D L+GL N      +L +           +S +  DID+FK 
Sbjct: 55  LALANQRLRDALLEKALYDPLTGLRNRHHLEDTLRTQMGQAIHNQTPISCLMMDIDHFKD 114

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND FGH  GD VI  ++  +           R GGEEF     G  E+EA  +A D+  
Sbjct: 115 VNDRFGHEAGDGVIKGVAAIIQRAIRDSGMAFRYGGEEFLVLLSGMGEEEANRMATDIYN 174

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +    +   +    HI +S G+A          ++  AD ALY AK+ GR+R+V F
Sbjct: 175 GVHALTLRFGTSDISHIDVSIGVASYPQHAQSDNLLRAADVALYRAKELGRSRIVSF 231


>gi|84387083|ref|ZP_00990105.1| GGDEF family protein [Vibrio splendidus 12B01]
 gi|84377944|gb|EAP94805.1| GGDEF family protein [Vibrio splendidus 12B01]
          Length = 486

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/195 (29%), Positives = 93/195 (47%), Gaps = 12/195 (6%)

Query: 73  IISITISLLLGYISGSILKELFISY-------NRISQLSRIDCLSGLLNHSAFISSLGS- 124
           I+  TISLLL YI    ++E    Y         +  L+  D L+ + N  AF   LG  
Sbjct: 292 IVGTTISLLLAYIVNLQIREKERLYRMIDERTEELRFLANHDSLTEIYNRRAFNKMLGQS 351

Query: 125 --YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
              ++  S++ FD+D FK+IND FGHP GD ++  +   + V   +   + R+GG+EF  
Sbjct: 352 IQRDKPFSLIVFDVDKFKEINDKFGHPAGDALLIHVIKVISVSLKSGDNLFRMGGDEFGI 411

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242
            +  +     +     + + +  S    S G  +  T+S G A     E I  ++ + D 
Sbjct: 412 ISSITEHDSLSRYLECILETVSESHCEHS-GQLLSCTLSIG-ATIRTNEDIEALLQKTDS 469

Query: 243 ALYVAKKSGRNRVVC 257
            LY++K +GRNRV  
Sbjct: 470 MLYLSKSNGRNRVTI 484


>gi|262396757|ref|YP_003288610.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio sp. Ex25]
 gi|262340351|gb|ACY54145.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio sp. Ex25]
          Length = 451

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/214 (28%), Positives = 99/214 (46%), Gaps = 5/214 (2%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
            I   +  +   Y L  + +    + + ++     L  +     ++L I+  ++ +++  
Sbjct: 224 RILNRWSVVKTVYPLYLLPIAIFVMAVATLYHIFALKRMVALRTRQLTIANQQLLEMTLT 283

Query: 107 DCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+ L N    I  L         L+++ FDID FK IND +GH VGD+ I  +++   
Sbjct: 284 DSLTKLYNRRHLIEQLALLNHLQRSLTVMVFDIDDFKSINDQYGHLVGDRAIVAVAETAK 343

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
            +    M + R+GGEEFA      SE+EA   A  L K +    I I  G +IH++IS G
Sbjct: 344 SMTDERMTLARIGGEEFALVTASLSEREARNFAQMLCKAVYEQPI-ILGGQAIHLSISLG 402

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            A       I  +   ADQ +Y  K  G+NR V 
Sbjct: 403 CAYYPEFTHIVNL-QDADQLMYQGKSEGKNRAVF 435


>gi|251771301|gb|EES51882.1| diguanylate cyclase/phosphodiesterase [Leptospirillum
           ferrodiazotrophum]
          Length = 811

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 9/182 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQI 142
           +K +++    I   +  D L+GL N   F             +    S++  D D FK I
Sbjct: 375 VKAMYLYTQEIEYYASRDPLTGLYNQRIFWDLMNYETGRADRHGSPSSLLIIDCDNFKVI 434

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD+V+  L+  +     T   + R GG+EFA     +    A  L + + + 
Sbjct: 435 NDTYGHAAGDRVLVGLARIIEEACRTGDIICRYGGDEFAVIVSEADVNSAHALGDRIHEA 494

Query: 203 IENSQINISSGP-SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +  ++  I   P    +++S GIA    H +    +   AD  +Y AKK G++ VV  ++
Sbjct: 495 VRRARFEIPDAPYPATLSVSIGIASYPRHAKHARDLFVVADHMMYRAKKMGKDLVVEANE 554

Query: 261 IE 262
            +
Sbjct: 555 DD 556


>gi|156977361|ref|YP_001448267.1| diguanylate cyclase/phosphodiesterase [Vibrio harveyi ATCC
           BAA-1116]
 gi|156528955|gb|ABU74040.1| hypothetical protein VIBHAR_06147 [Vibrio harveyi ATCC BAA-1116]
          Length = 778

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/271 (25%), Positives = 122/271 (45%), Gaps = 31/271 (11%)

Query: 22  FSPHTFMIY---------FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NL 69
            SP  ++++          ++ F I     I +  + L+   L+P   L+  L E   N 
Sbjct: 243 LSPAEYLMWNKVDKVWLELALSFGIASFCTITLIVLVLYRYVLSPVSRLDKQLREIEANK 302

Query: 70  SLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFIS----SL 122
              I  +     +G +S     + +EL   Y++  +L+  D L+ L N   F       L
Sbjct: 303 RANIEKLDTDDEIGRLSSRFFDMYEELNNVYHKTKRLAETDHLTQLANRHRFHELASQEL 362

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-------TPMFVGRL 175
              +E++ +++ D+D FK +ND +GH +GDK++   S  +            +P F  RL
Sbjct: 363 AEPSEQIWVIYIDLDNFKYVNDKYGHELGDKLLQVFSKHIRNACQKFTQQYNSPCFGARL 422

Query: 176 GGEEFAAAALGSSEQEAA--ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
            G+EFA     + E      + A +L K I N  +  S+  S  +T S GIA+       
Sbjct: 423 SGDEFAILLSSNQENSELPDLFAAELLKPINN--LTQSAKNSFPVTASVGIAQYPRDGGD 480

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           I+ ++  AD A+Y AK++G+N+   +S   N
Sbjct: 481 IAKLLSSADAAMYQAKRAGKNQYAYYSAALN 511


>gi|300930118|ref|ZP_07145542.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
 gi|300461979|gb|EFK25472.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
          Length = 452

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/258 (24%), Positives = 116/258 (44%), Gaps = 22/258 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LV 66
            + +WL        F+   + I+  +    F A +  I+ +F+    ++ +Y    I +V
Sbjct: 199 MIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVV 258

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             L++++I +            I   L ++ N    ++  D L+ + N + F + L    
Sbjct: 259 SKLTVMVIFMC----------HIFSALRVTKN----IAHRDPLTNIFNRNYFFNELTVQS 304

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +      ++  DID+FK++ND +GHPVGD+VI  + + +         +  +GGEEF 
Sbjct: 305 ASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLAHVGGEEFG 364

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYR 239
                   + A  LA  +R+ +E    +         +TIS G +  + +    + I   
Sbjct: 365 VLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRL 424

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK++GRN+VV 
Sbjct: 425 ADNALYEAKETGRNKVVV 442


>gi|289641732|ref|ZP_06473891.1| diguanylate cyclase/phosphodiesterase [Frankia symbiont of Datisca
           glomerata]
 gi|289508490|gb|EFD29430.1| diguanylate cyclase/phosphodiesterase [Frankia symbiont of Datisca
           glomerata]
          Length = 896

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 12/168 (7%)

Query: 106 IDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            D L+GL N +A +  L             +++++F D+D FK +ND+ GH  GD ++  
Sbjct: 465 HDGLTGLPNRTALLDRLHQALTGARGDRPRRVAVLFVDLDGFKTVNDSLGHHAGDDLLRE 524

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSI 216
           ++ +          V R  G+EFA      +S      +A  L   +   +   +   +I
Sbjct: 525 VAGRCRRAARPGDTVARFSGDEFAILCEDITSASCVEAVAKRLVSTLAIPR--TACERTI 582

Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            +T S GIA    +      I++ AD A+Y AK+ GR+  + F +   
Sbjct: 583 TVTASVGIAVSGPELSDPEDILHAADIAMYAAKRQGRSCHMVFDETMR 630


>gi|262170750|ref|ZP_06038428.1| GGDEF family protein [Vibrio mimicus MB-451]
 gi|261891826|gb|EEY37812.1| GGDEF family protein [Vibrio mimicus MB-451]
          Length = 505

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 103/241 (42%), Gaps = 16/241 (6%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS----LVIISITISLLLGYISGS 88
           I   +F ++V+++ N+++    + P      +L +  +    +   S  IS  +   + +
Sbjct: 261 ILALLFFSSVMYVVNLWVVVTLIKPITAANQVLQQFKTSGGKMPDASTFISAEMKEFAST 320

Query: 89  I---LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFK 140
           I   + +L  S   +   S  D L+ + N       L  Y        L +   DIDYFK
Sbjct: 321 INHIVTQLDESQQVLRWQSEHDPLTRISNRRYLEKQLKGYLSDRPCRYLVLYLIDIDYFK 380

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199
             NDNFGH  GD+ +  ++  L  +       V R GGEEF       SE +A   A  +
Sbjct: 381 PFNDNFGHLAGDEALCSVAQALQAIEFDGEKIVTRFGGEEFCVVLASDSELDAEQFAQQI 440

Query: 200 RKIIENSQINISSGPSI-HITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              +    I         ++T+S G   A     +   ++ ++AD ALY AK+SGRNR V
Sbjct: 441 HTKVAELAIANPQDSDFQYLTVSIGGVYAISPRMDAYLSLFHQADMALYEAKESGRNRYV 500

Query: 257 C 257
            
Sbjct: 501 V 501


>gi|254974137|ref|ZP_05270609.1| putative chemosensory protein [Clostridium difficile QCD-66c26]
 gi|255091538|ref|ZP_05321016.1| putative chemosensory protein [Clostridium difficile CIP 107932]
 gi|255313265|ref|ZP_05354848.1| putative chemosensory protein [Clostridium difficile QCD-76w55]
 gi|255515955|ref|ZP_05383631.1| putative chemosensory protein [Clostridium difficile QCD-97b34]
 gi|255649046|ref|ZP_05395948.1| putative chemosensory protein [Clostridium difficile QCD-37x79]
          Length = 319

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 8/176 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQ 141
           I  EL  S  ++++L   D L+GL N    I+ L             +S++  DID FK 
Sbjct: 136 INNELESSLEKLNRLVVRDYLTGLYNRRHIINQLMEQRRINKYSETSISLILGDIDDFKV 195

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH  GD V+  +S  +         V R GGEEF      +  + A IL+  +RK
Sbjct: 196 INDTYGHEAGDFVLTVISSIIKKNCRQIDTVSRWGGEEFLIMLTNTPIEGAKILSERIRK 255

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I+    N      I  TI+ G+ E      +   I  AD+A+Y  K  G++  V 
Sbjct: 256 EIKEFDFNYKE-HKIKCTITLGVVEVNSNISLEENISLADKAMYEGKNLGKDCSVV 310


>gi|146280132|ref|YP_001170289.1| hypothetical protein Rsph17025_4133 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558373|gb|ABP72984.1| diguanylate cyclase/phosphodiesterase [Rhodobacter sphaeroides ATCC
           17025]
          Length = 875

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 83/182 (45%), Gaps = 7/182 (3%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQ 141
           I    + E   +  R++ L+  D ++GL N   F   L         +S++  D+D FK 
Sbjct: 441 IFFRDVTEQRTARERMAHLAHHDPMTGLANRMKFSEELQRCVSLETPVSVLLIDLDNFKD 500

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLR 200
           +ND  GHP+GD V+  +  +L  +        RLGG+EFA    G  ++ A   +A  + 
Sbjct: 501 MNDTLGHPLGDAVLVEIGRRLQQLMRPGNLAARLGGDEFAMLIFGQQDRIALGAIAERVL 560

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             I ++ I + +  ++ +T S GIA        + ++  AD ALY AK+  R     F  
Sbjct: 561 ARI-SAPIALPN-QTVRVTASMGIAM-DDVANRAELVRTADIALYEAKRDNRGTYRFFDG 617

Query: 261 IE 262
             
Sbjct: 618 AM 619


>gi|127511912|ref|YP_001093109.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella loihica PV-4]
 gi|126637207|gb|ABO22850.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella loihica PV-4]
          Length = 816

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 11/171 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++S L+  D L+ L N       +        SY++ ++++  DID+FK +ND+ GH  G
Sbjct: 388 KMSHLANHDQLTDLPNRILLHDRINHACAVADSYDKSVALMLIDIDHFKYLNDSLGHSYG 447

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINI 210
           D+VI  ++ +L  +      +GR+GG+EF       ++  +   +A D+ + + N+   I
Sbjct: 448 DQVIKQVAKRLQSLIDPNATLGRIGGDEFVLLLPSLTATSQVDSIATDIVRSL-NTPFRI 506

Query: 211 SSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
             G    +++S GI+           ++   D A+Y AK  GRNR   FS+
Sbjct: 507 -DGQEYTLSVSVGISIYPSDALRAEELMTHVDAAMYRAKDLGRNRFCYFSE 556


>gi|260768516|ref|ZP_05877450.1| GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260616546|gb|EEX41731.1| GGDEF family protein [Vibrio furnissii CIP 102972]
          Length = 505

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 99/216 (45%), Gaps = 17/216 (7%)

Query: 59  YGLEYILVENLSLVIISI-----TISLLLGYISGSILKE-------LFISYNRISQLSRI 106
           + L   L +N   V+I +      ISLLLG++S  +++E       L      +  +   
Sbjct: 292 FRLSVPLTQNDQWVLIGLGAGGTIISLLLGFVSYLLMREKETLNLKLEERTKELRFMVEH 351

Query: 107 DCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+G+ N  AF   L      ++  ++V FDID FK IND + H  GD+++  ++  + 
Sbjct: 352 DSLTGIFNRRAFNRILDVYMRDDKVFTLVSFDIDNFKSINDRYSHLAGDQILVAVTKTIE 411

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
            V        R GG+EF+     +  +        +R+ +E SQ + +    I +++S G
Sbjct: 412 KVLEGNDIFVRTGGDEFSILCHVTEREPLMRYLEKIRRTVEQSQFD-TGYQLISVSLSIG 470

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            A   H      ++ RAD  LY +K  GRN+V    
Sbjct: 471 AAVN-HGYSEQELLQRADTMLYESKAKGRNQVSIAD 505


>gi|200391114|ref|ZP_03217725.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|199603559|gb|EDZ02105.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 663

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRTQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSESLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 394 VFSPEMNQ 401


>gi|59711957|ref|YP_204733.1| GGDEF domain-containing protein [Vibrio fischeri ES114]
 gi|59480058|gb|AAW85845.1| GGDEF domain protein [Vibrio fischeri ES114]
          Length = 681

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 95/206 (46%), Gaps = 9/206 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           I+  +  L+ I I I+     I  +  KE+     ++  LS  D L+ + N  A    L 
Sbjct: 477 IMFFSGFLLCILIVIA-AFARILMNKNKEINALNLKLHDLSLTDGLTAVPNRRALELHLL 535

Query: 124 SYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              + L   S++  DIDYFK+ ND +GH  GD+ +  ++  L        F+ R GGEEF
Sbjct: 536 ENKQDLTVRSVMMIDIDYFKKYNDTYGHKKGDEALIAVAKALKESCKENDFLTRFGGEEF 595

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHITISAGIAER----CHKEPIST 235
                 +++ E+  +A  ++  I +  I   SS  S  IT+S GI         K     
Sbjct: 596 IIVMKNTNKAESIQMAEKIQACITSLCIPHESSDVSSFITLSIGITTYSVNKDDKANNEK 655

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDI 261
            I  AD+ALY +K  GRN+   F DI
Sbjct: 656 AIIEADKALYYSKNKGRNQSNHFYDI 681


>gi|83719449|ref|YP_441502.1| EAL/GGDEF domain-containing protein [Burkholderia thailandensis
           E264]
 gi|83653274|gb|ABC37337.1| EAL/GGDEF domain protein [Burkholderia thailandensis E264]
          Length = 786

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 103/208 (49%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVIIS-ITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +Y    N+ L++ S IT+++L  + ++  ++ +L      ++QL+  D L+GL N  A +
Sbjct: 292 DYHHTRNVYLLMTSFITLAMLAFFGVATGLIGKLLGREREMTQLAEFDLLTGLANRYATL 351

Query: 120 SSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            SL       S   +L+I+F D+D FK +ND  GH  GD V+   + +L         + 
Sbjct: 352 RSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVTNEGALA 411

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EF     G + E+ A  LA  + ++    +     G S  +  S GIA      E
Sbjct: 412 RIGGDEFVVVVKGENVERRAERLAEAIVRMFA--EPFDVRGSSFVLHASIGIALHSVENE 469

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +AD A+Y AK +G+N    ++
Sbjct: 470 SEIDLLKKADLAMYSAKDAGKNCYQFYA 497


>gi|238783276|ref|ZP_04627301.1| Diguanylate cyclase [Yersinia bercovieri ATCC 43970]
 gi|238715869|gb|EEQ07856.1| Diguanylate cyclase [Yersinia bercovieri ATCC 43970]
          Length = 372

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 4/202 (1%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           +L   + +  +     L + Y + +  +    +Y  +   + ID L+ L N ++    L 
Sbjct: 154 LLWTQIVVYQLISAFCLAICYHALNFKERHIYAYFAMKNRANIDKLTQLNNRASVDYRLN 213

Query: 124 S-YNEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           + ++ +L+  ++  D+D+FK +ND +GH  GD ++  +   L        FVGR GGEEF
Sbjct: 214 AIHSSRLACGLMILDLDHFKSVNDTYGHDGGDLLLTEVGKLLTSTIRDEDFVGRFGGEEF 273

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                    Q    +A  +R+ +EN  + +S G  I  TIS G +       +   I   
Sbjct: 274 IVITHSHDPQAIKAVAERIRRRVENLDVELSDGRKIEATISIGASLYLPGMSMLKAIKMT 333

Query: 241 DQALYVAKKSGRNRVVCFSDIE 262
           D+ALY AK  GRN+VV +S + 
Sbjct: 334 DEALYQAKNQGRNQVV-YSRLM 354


>gi|330964789|gb|EGH65049.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 818

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 16/190 (8%)

Query: 83  GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIV 132
           G +SG++L    ++  R     +S  +  D L+GL+N S F   L        +    ++
Sbjct: 348 GVVSGAVLVLHDMTQERQYIADLSWQAAHDPLTGLVNRSEFERRLQQVLDDSTSGSHCLM 407

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F D+D FK +ND  GH  GD+++  L   L         + RLGG+EF    +  +   A
Sbjct: 408 FLDLDQFKLVNDTGGHAAGDELLRQLCRALPQGLRDGDTLARLGGDEFGVLLVDCTASTA 467

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI---IYRADQALYVAKK 249
             +A  LR+I++     +  G     T+S G+      +  +T+   +  AD A Y+AK+
Sbjct: 468 HDIAEALREIVQGLHF-MWKGRPFMTTVSIGLVHL--GDTPATLEGSLSAADMACYMAKE 524

Query: 250 SGRNRVVCFS 259
            GRNRV  +S
Sbjct: 525 KGRNRVQVYS 534


>gi|304312052|ref|YP_003811650.1| hypothetical protein HDN1F_24240 [gamma proteobacterium HdN1]
 gi|301797785|emb|CBL46007.1| Hypothetical protein HDN1F_24240 [gamma proteobacterium HdN1]
          Length = 715

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 18/192 (9%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
           G  +         I +L+ ID L+ L N     S L               ++F D+D F
Sbjct: 484 GVDITARIQLEEEIRELAFIDPLTHLPNRRILQSRLDHELAILRRKGGHGVLMFLDLDNF 543

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA------LGSSEQEAA 193
           K +ND +GH  GD ++  ++ +L         + RLGG+EF   A      + ++ ++A 
Sbjct: 544 KPLNDTYGHAAGDHLLVQVATRLKECVRDTDTLVRLGGDEFIVLAGRLDHDIRTARKQAT 603

Query: 194 ILANDLRKIIENSQI----NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           ILAN L K I    +    + +S      T+S G+    +       + +AD  +Y AK 
Sbjct: 604 ILANKLLKRISEPYLLDSTDETSDIRHRCTVSIGVTLFDNSVSGDFALKQADTTMYSAKN 663

Query: 250 SGRNRVVCFSDI 261
           SGRN V  +S++
Sbjct: 664 SGRNCVE-YSEL 674


>gi|119468741|ref|ZP_01611793.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Alteromonadales bacterium TW-7]
 gi|119447797|gb|EAW29063.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Alteromonadales bacterium TW-7]
          Length = 306

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 80/182 (43%), Gaps = 14/182 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQIN 143
           ++L      +  L+  D L+ LLN           +         ++++  DID FK IN
Sbjct: 131 EKLEEQAEELKSLASTDELTNLLNRREMNYRSTLLLEQSLRSKHSVALLVIDIDNFKLIN 190

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGH  GD+VI  L   L         + R GGEEF      + ++ A +  N L  II
Sbjct: 191 DTFGHLEGDRVIKELGQALKSFGRQTDLISRYGGEEFLIMLPDTDKKGALLFCNRLHAII 250

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            +  I + + P   +T+S G+           +  +AD A+Y AK  G+NR   F D  +
Sbjct: 251 AD--ILVDNKP---VTVSIGMTISNTINTFIDLFTQADNAVYQAKSLGKNRTQLFGD--D 303

Query: 264 NT 265
           NT
Sbjct: 304 NT 305


>gi|88860890|ref|ZP_01135526.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Pseudoalteromonas tunicata D2]
 gi|88817103|gb|EAR26922.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Pseudoalteromonas tunicata D2]
          Length = 503

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/166 (33%), Positives = 83/166 (50%), Gaps = 12/166 (7%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           ++   SR D L+ + N  A    L         Y+ +LSI+  DID+FK +ND +GH  G
Sbjct: 340 KLRSESRTDTLTQVGNRIACNEKLESNIAHSERYSTELSIILIDIDHFKNVNDKYGHLTG 399

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D+V+  ++  L         + R GGEEF      + +Q+AA LA  LR++ +    +  
Sbjct: 400 DQVLIQVAQLLKAHIRESDSLFRWGGEEFLIITPNTGQQQAAELAEKLRRLTQVHSFH-- 457

Query: 212 SGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVV 256
                +ITIS GI    H    S ++ +R D+ALY AK SGRN   
Sbjct: 458 --DEFNITISLGITSYLHARDTSKSLFHRIDKALYQAKNSGRNTCC 501


>gi|84387104|ref|ZP_00990126.1| GGDEF family protein [Vibrio splendidus 12B01]
 gi|84377965|gb|EAP94826.1| GGDEF family protein [Vibrio splendidus 12B01]
          Length = 383

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 9/173 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144
           EL  +  ++ +LS  D L+ L N  +    L  + +        L  +  D D FK+IND
Sbjct: 208 ELKRASKKLEELSLTDSLTHLPNRRSAFKQLALHWQDSKELGMPLVCIMIDADNFKRIND 267

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD V+  LS +L   F     V RLGG+EF      +  +    +A   R+ + 
Sbjct: 268 TSGHDAGDLVLQTLSRELKNTFRNDDIVCRLGGDEFLVICPNTDLKGGMHIAETARQKVS 327

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             ++  S    I  +IS G+AE   + E ++ ++  AD+++Y+AK +G+N V 
Sbjct: 328 ELEVETSHQVWIG-SISVGVAEITQEFESMNELVKAADESVYLAKNAGKNSVC 379


>gi|332307994|ref|YP_004435845.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175323|gb|AEE24577.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 339

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/245 (28%), Positives = 115/245 (46%), Gaps = 6/245 (2%)

Query: 19  LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN--LSLVIISI 76
           L S  P   + +  + + +F   +  + +  L  I +   Y    I   +  +S++I  +
Sbjct: 91  LLSGLPFWLLTFPILLYLLFGKRLGLVGSAALLLIEVNILYFNTQIENTDAVISILINFV 150

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--LSIVFF 134
              +++  IS S       +  ++  L+  D L+   N  A       Y +K  +S+   
Sbjct: 151 LAYIVIWVISHSYEMSRKSNEKKLVNLALRDALTQTYNRLALQEHFSQYLDKDDISVALL 210

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID FKQIND FGH VGD V+  LS  +    G    V R+GGEEF       +      
Sbjct: 211 DIDDFKQINDRFGHDVGDCVLLQLSKLVRKTVG-DDQVYRIGGEEFVVLFKDCTMDSLVS 269

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +   LR  I+++Q   +   +I+ITIS G++E     P+S  + +AD+ LY AK+ G+N+
Sbjct: 270 IIESLRHTIQHTQFG-NDTLTINITISIGVSEVQDGTPLSQHLKQADERLYCAKRKGKNQ 328

Query: 255 VVCFS 259
            V  S
Sbjct: 329 AVFIS 333


>gi|293392429|ref|ZP_06636751.1| GGDEF domain protein [Serratia odorifera DSM 4582]
 gi|291425083|gb|EFE98290.1| GGDEF domain protein [Serratia odorifera DSM 4582]
          Length = 482

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 9/210 (4%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SA 117
           L++ L    + I + ++   I  S +        R+   +  D L+G L           
Sbjct: 266 LLDTLMSARLGIAMLVMGPLIVSSSIAVNRKLMRRLEHSASHDFLTGTLTRSALMRKTRE 325

Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
            +       E +S++  D+D+FK IND++GH +GD+V+A     L         +GRLGG
Sbjct: 326 LLEQKQRCKEAVSLLLIDVDHFKLINDSYGHVIGDRVLANFIHLLRRELRPDQLLGRLGG 385

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPIST 235
           EEFA     +   +A  +   LR+ +E +QI+      + +TIS G+A       + +  
Sbjct: 386 EEFAIVMPRALAAQAVAMGEYLRRQVEKAQIDTGDRAPLKLTISVGVASLAMNEDKSLEQ 445

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           ++  AD ALY AK  GRNRV  F+ +  N+
Sbjct: 446 LMNMADIALYRAKSLGRNRVEPFNVLSGNS 475


>gi|239909085|ref|YP_002955827.1| putative signaling protein [Desulfovibrio magneticus RS-1]
 gi|239798952|dbj|BAH77941.1| putative signaling protein [Desulfovibrio magneticus RS-1]
          Length = 821

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 12/175 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYF 139
             + E      +I+  +  D L+GL N S F   L           + + +++  D++ F
Sbjct: 370 QDISERKAFEEQITHQAFHDALTGLPNRSLFADRLDRALTRARRRGDYQYAVLMIDLNKF 429

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K IND  GH  GD+++  +S +L+    +   V RLGG+EFA       S++E   + + 
Sbjct: 430 KGINDTLGHQAGDQLLVEVSRRLMACVRSMDTVARLGGDEFAVILEELKSKKEVMAVVDR 489

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252
           +   +   +  +  G ++    S GI  R    +    I+  AD A+Y AK+SGR
Sbjct: 490 IGAAL--GKPCMLCGTTVTPGASVGIVLRTRDYQSPEDILRDADIAMYRAKESGR 542


>gi|325497365|gb|EGC95224.1| diguanylate cyclase YddV [Escherichia fergusonii ECD227]
          Length = 313

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   ++      +D L+ LLN           I+     +  LS +  D+D FK
Sbjct: 134 TLLRELFEEVSK--HEVGMDVLTKLLNRRFLPTIFKREIAHANRVSTPLSTLIIDVDKFK 191

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE +   +A  +R
Sbjct: 192 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFVIVLTEASENDTLRIAERIR 251

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+AK+ GRNRV  +
Sbjct: 252 SRVEKTKLKAANGDDIPLSLSIGAAMFNGHPDYERLIQMADEALYIAKRRGRNRVELW 309


>gi|169826402|ref|YP_001696560.1| putative signaling membrane protein [Lysinibacillus sphaericus
           C3-41]
 gi|168990890|gb|ACA38430.1| putative signaling membrane protein [Lysinibacillus sphaericus
           C3-41]
          Length = 309

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 111/262 (42%), Gaps = 19/262 (7%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE 67
           +L   L  E   E   P +  +   I   I +  V+ +  I+L    + P   L  ++  
Sbjct: 44  YLEGLLKEEATNEKVIPFSLFLKKVIVPIILVIAVVLVLAIWLVLKIVRPLNELSTMIEA 103

Query: 68  NLSLVIISITISLLLGYISGSILKE-----LFISYNRISQLS---RIDCLSGLLNHSAFI 119
             +         +   Y    ILK      +  + ++I+ L+    +D L+G+ N     
Sbjct: 104 GEN---GQEKEQIADWYYEAKILKRSVQNMMICAESKITDLTEQLNVDSLTGIPNRRIMD 160

Query: 120 SSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
            +L          +++  D+D FK IND +GH VGD+V+   +  + +  G      R G
Sbjct: 161 QTLHELIINKVPHAVILIDLDDFKSINDTYGHTVGDEVLKAFAHHMQLNMGEQGMCFRYG 220

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPIST 235
           GEEF       S  EA  LA  LR  ++ +    + G    +T+SAGI       +  + 
Sbjct: 221 GEEFMIILPSRSIDEAVELAESLR--VKQALQETACGR--PVTMSAGITAFTPNVQSPNQ 276

Query: 236 IIYRADQALYVAKKSGRNRVVC 257
           +I  AD ALY AK+SGRN +  
Sbjct: 277 LIEIADHALYKAKQSGRNCLCV 298


>gi|69953820|gb|AAZ04316.1| sensory box histidine kinase [Thermotoga sp. RQ2]
          Length = 449

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 13/227 (5%)

Query: 39  IATVIFIANIFLFYIGLTPFYG-LEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           I   IF    F  Y  +  F+  L ++      +VI+   I   L     ++L EL+   
Sbjct: 202 IILTIFGELSFTLYSDVCGFFNFLGHVFRLFSYMVILRGVIVNALANPVQALLFELYEEK 261

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +++  D L+GL N + F   +          N  LS +  D+D FKQIND +GH  
Sbjct: 262 EKLKEIAHRDSLTGLFNRAFFNEWIQDQVRKAQFQNVPLSFIMIDVDNFKQINDTYGHLT 321

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDKV+ F++  +     +  F  R GG+EF      +S+Q+A  +A+ +R+ I N     
Sbjct: 322 GDKVLRFVARCISDSIRSSDFAVRYGGDEFLVVLYNTSKQQAEQVASRIREKIRN----- 376

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S    + + IS G+AE    +     + +AD+ +Y  K+  ++ VV 
Sbjct: 377 SDELGVDVDISYGVAELKPGDNYLKFLQKADEEMYGMKRERKSPVVI 423


>gi|113971525|ref|YP_735318.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|114046280|ref|YP_736830.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113886209|gb|ABI40261.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113887722|gb|ABI41773.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 646

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 15/205 (7%)

Query: 64  ILVENLSL-VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +L +N SL +II +    +L  +S    K++      +  ++  D L+ L N     +  
Sbjct: 437 LLEKNKSLQLIILLLTGCILAIVSLFAYKQVHR-NRHLQTIALTDYLTQLPNRRHIYAQA 495

Query: 123 GSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
             Y +        LS++ FD DYFK+INDNFGH +GD+ +  ++     +      +GR+
Sbjct: 496 EQYFQQALKQKTPLSVIIFDADYFKKINDNFGHEIGDQALLTIAQACKELTADRNLIGRI 555

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-----RCHK 230
           GGEEF      ++ +    LA++L+ +I      I+    + +T+SAG+A      +   
Sbjct: 556 GGEEFLILLPNTTAERVWELAHELQSLISRYG-AINLPEELKLTVSAGVATLSPEAKPQD 614

Query: 231 EPISTIIYRADQALYVAKKSGRNRV 255
           +  + ++ RAD ALY AK +GRN V
Sbjct: 615 DSFARLLKRADNALYEAKNAGRNCV 639


>gi|310658000|ref|YP_003935721.1| hypothetical protein CLOST_0690 [Clostridium sticklandii DSM 519]
 gi|308824778|emb|CBH20816.1| membrane protein of unknown function [Clostridium sticklandii]
          Length = 652

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/181 (31%), Positives = 89/181 (49%), Gaps = 11/181 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDY 138
           +  +  +L I      + S ID ++GL N              +      LSI+  D+D+
Sbjct: 469 ASELASKLKIEKEIAEKNSLIDSMTGLANRRYLEQRIMYEYARMKRNWSNLSIIMIDVDF 528

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           FK  ND +GH  GD  +  ++  L   V      V R GGEEF      + +  A+ILA+
Sbjct: 529 FKLYNDTYGHVQGDICLKTIAATLRSTVKRQTDLVARYGGEEFVVLLPETDKYSASILAD 588

Query: 198 DLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNR 254
           +++  IEN +I +++S  S ++T+S GIA       +    +I +AD ALY AKK GRN 
Sbjct: 589 NIKTNIENLEIEHMTSTISDYVTVSIGIATFTKDCNVSCEDLIQKADVALYQAKKIGRNS 648

Query: 255 V 255
           +
Sbjct: 649 I 649


>gi|213967018|ref|ZP_03395168.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           T1]
 gi|301385203|ref|ZP_07233621.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062771|ref|ZP_07254312.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           K40]
 gi|213928340|gb|EEB61885.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           T1]
          Length = 705

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 96/216 (44%), Gaps = 15/216 (6%)

Query: 64  ILVENLSLVIISITISLLLGYI---SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +LV +LS++ I++   +L  ++   +  +   L  + + ++  +  D L+GL N +    
Sbjct: 220 VLVASLSVLSITLFCCILDSHLETRTAVLANSLVEANHELTHRALHDSLTGLPNRTLLTD 279

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV--VFGTPMF 171
            +     K        +++F D+D FK +ND FGH  GD ++  ++ +L           
Sbjct: 280 RIEQTMNKVRENGGCFALMFMDLDGFKPVNDAFGHHTGDLLLRQVALRLRQNLHLHLHDT 339

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF        +Q+A  +A   R++ E           + I++S GI     + 
Sbjct: 340 LARVGGDEFVLLVELQDQQDALAVAT--RQVNEIGNPFTIGEHQLQISLSIGICMYPGNG 397

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
                ++  AD A+Y  K +G+N    F    N+  
Sbjct: 398 TTQHELLVNADAAMYHTKAAGKNGYSFFDVSMNSNA 433


>gi|92113846|ref|YP_573774.1| diguanylate cyclase with PAS/PAC sensor [Chromohalobacter
           salexigens DSM 3043]
 gi|91796936|gb|ABE59075.1| diguanylate cyclase with PAS/PAC sensor [Chromohalobacter
           salexigens DSM 3043]
          Length = 733

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 87/185 (47%), Gaps = 11/185 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVF 133
           ++G++    +  L     R    +  D L+GLLN   F   L           +  +++ 
Sbjct: 547 VVGFV--KDITHLREQQKRQLWEAEHDPLTGLLNRRGFDRRLNDTFMAFKERGDVAALIL 604

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           FD+D FK IND+ GH +GD+++  ++  L         + RLGG+EFA    G   Q+A 
Sbjct: 605 FDLDSFKPINDDGGHALGDEMLDAIARCLEGCVRRDDHLARLGGDEFAILLPGCGHQQAV 664

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252
            +A+ +R  +    + +  G    +T S G++      +    ++ RAD A Y AK  G+
Sbjct: 665 RIADKVRHAVSELSV-VQDGKRYRVTASLGVSCLGSDDDEAQAVVKRADAASYEAKAQGK 723

Query: 253 NRVVC 257
           NR+V 
Sbjct: 724 NRMVA 728


>gi|313632651|gb|EFR99632.1| ggdef domain-containing protein [Listeria seeligeri FSL N1-067]
          Length = 375

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 105/232 (45%), Gaps = 11/232 (4%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           FS FIA +I      L+Y       G      E +  + +S    LL+ Y    I K   
Sbjct: 140 FSKFIALLILSFPAQLYYFINNFDGGHILQGFEIVEYLFLSFATGLLVFYACNYIDKSNL 199

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFG 147
           +    +++ +  D L+ L N   F                 LS+   DID+FK+IND  G
Sbjct: 200 V-IQTLTETAMTDSLTNLPNMRFFTQQFAWIFNKSLKKKAPLSLFIIDIDHFKEINDFHG 258

Query: 148 HPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  G+ V+A  S  L    F       R+GGEEFA         +AA++A+ +R+ IE +
Sbjct: 259 HQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVDATQAALIADHIREEIERA 318

Query: 207 QINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +   S  +TIS G+A   C      ++   ADQALY AK+SGRN++  
Sbjct: 319 KFPYTP-TSGQVTISIGVATANCSFSTTESLFEAADQALYQAKQSGRNQISV 369


>gi|260556102|ref|ZP_05828321.1| ggdef domain/eal domain-containing protein [Acinetobacter baumannii
           ATCC 19606]
 gi|260410157|gb|EEX03456.1| ggdef domain/eal domain-containing protein [Acinetobacter baumannii
           ATCC 19606]
          Length = 684

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 99/197 (50%), Gaps = 10/197 (5%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------S 124
           LV+++  I  +L         EL  +   ++ LS  D L+ L N    +           
Sbjct: 225 LVLVASFIVAVLEQRLNQRNLELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSDHR 284

Query: 125 Y-NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
           Y ++K++ ++ D+D FK +ND FGH  GD+++  ++++L         + R+GG+EF   
Sbjct: 285 YKDQKIAFLYIDLDRFKSVNDAFGHHFGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLI 344

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQ 242
           A  +  +EA  LA  +  +I++S     SG  I+I+ S GIA    H + +  ++  AD 
Sbjct: 345 AENTDTEEAMQLAEKVLHLIQDS--YQISGKEINISASLGIALFPEHGQNVQDLLMNADA 402

Query: 243 ALYVAKKSGRNRVVCFS 259
           A+ ++K+ GRN    FS
Sbjct: 403 AMLMSKEQGRNTYTVFS 419


>gi|255320299|ref|ZP_05361484.1| ggdef domain protein [Acinetobacter radioresistens SK82]
 gi|255302738|gb|EET81970.1| ggdef domain protein [Acinetobacter radioresistens SK82]
          Length = 565

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 116/251 (46%), Gaps = 15/251 (5%)

Query: 14  CHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI 73
             +K + + S     ++ +IF  ++    +F   I    + L         +  +  L  
Sbjct: 322 AWKKFILTLSVSVISVFTAIFTMVYARYKVFTPLIRARNLILKLAGHQNARIQSSDILYP 381

Query: 74  ISI--TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS---LGSYNEK 128
           +S+   I  L   ++   + EL     ++  ++  D L+G+ N  A       L  + ++
Sbjct: 382 LSLFEAIQKLQAQLAERDVLEL-----QLRNIANTDILTGVSNRLALDEHIQYLEKHVKQ 436

Query: 129 LS---IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           LS   ++  DIDYFKQ+ND +GH +GD+VI  ++ QL     +   + R GG+EF     
Sbjct: 437 LSQTCLILVDIDYFKQVNDQYGHIIGDQVIQLVASQLKKSVRSSDLIIRYGGDEFIIFLE 496

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
                    +   +R  ++ + + + +G SI +++S G+A     E    ++ +ADQAL+
Sbjct: 497 YVEFGAVLKVVEKIRAEVQQAHLKLENGNSISVSVSIGVAT--GAENWLELLEKADQALF 554

Query: 246 VAKKSGRNRVV 256
            AK +GRN V 
Sbjct: 555 RAKAAGRNSVA 565


>gi|94265113|ref|ZP_01288878.1| GGDEF:GAF [delta proteobacterium MLMS-1]
 gi|93454400|gb|EAT04698.1| GGDEF:GAF [delta proteobacterium MLMS-1]
          Length = 707

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 58/197 (29%), Positives = 90/197 (45%), Gaps = 20/197 (10%)

Query: 73  IISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GS 124
           ++++  +LL  ++    + +EL I+       +  D L+ L N   F S L         
Sbjct: 515 LLAVIGNLLSAFLERDELERELMIN-------AITDGLTSLYNRRHFFSRLTAQCEEYRR 567

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
             +  ++  FDID+FK++ND +GH  GD V+   +  L   F     V R GGEEFA   
Sbjct: 568 SGKPFAVAMFDIDHFKRLNDTYGHLTGDCVLKEFATLLSQGFRAFDVVARYGGEEFAVML 627

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE----RCHKEPISTIIYRA 240
           + +  Q AA  A  + +           G S+ IT+S G+ E             ++  A
Sbjct: 628 IDADRQTAAATAQRILESTRRHHFKC-EGNSLQITVSGGLVEVGELADGAPTPEALVEEA 686

Query: 241 DQALYVAKKSGRNRVVC 257
           DQ LY AK +GR+RVV 
Sbjct: 687 DQRLYRAKNAGRDRVVW 703


>gi|311105057|ref|YP_003977910.1| diguanylate cyclase [Achromobacter xylosoxidans A8]
 gi|310759746|gb|ADP15195.1| diguanylate cyclase, GGDEF domain protein 4 [Achromobacter
           xylosoxidans A8]
          Length = 478

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 85/187 (45%), Gaps = 19/187 (10%)

Query: 90  LKELFISYNRISQL--------SRI----DCLSGLLNHSAF-------ISSLGSYNEKLS 130
           ++EL     RI  L        + I    D L+ +LN           IS       + S
Sbjct: 291 VRELQELVARIKHLLNGLFDMVAEIESGSDPLTNVLNRRFLPSVIGREISIARRQRSEFS 350

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  DID+FK IND  GH  GD+V+   ++ L     +  FV R GGEEF    + +  +
Sbjct: 351 VLLLDIDHFKAINDQHGHSGGDQVLRQFAEVLHQACRSSDFVFRYGGEEFLVVLVDAPRE 410

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
            A   A  L   I     NI     +HIT S G+A        + +I RADQALY AK++
Sbjct: 411 AALAAAEKLGAEIRRHVFNIPEAGPLHITASIGVATFDGHPDYAYLIDRADQALYQAKQA 470

Query: 251 GRNRVVC 257
           GR+R V 
Sbjct: 471 GRDRAVA 477


>gi|304410052|ref|ZP_07391671.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|307302235|ref|ZP_07581993.1| diguanylate cyclase [Shewanella baltica BA175]
 gi|304351461|gb|EFM15860.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|306914273|gb|EFN44694.1| diguanylate cyclase [Shewanella baltica BA175]
          Length = 584

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 109/244 (44%), Gaps = 26/244 (10%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGL-----EYILVENLSLVIIS---------ITISLL 81
           + FI  +     ++ F+I LT ++ +     + ++    ++  I+         +T +L 
Sbjct: 330 TAFIILIFCSGILYCFFIWLTSWHFITKGIIKPVMATRDAMNAIANEKLDTHMPVTDNLE 389

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFF 134
           L  +  S+   L     ++  ++  D L+G  N                 +N  L I+ F
Sbjct: 390 LQQMVNSLET-LKSYAAQVKGMAETDGLTGCYNRRYLDIQLQKELEYARDHNMPLGIILF 448

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           DID FKQ ND +GH  GD+ +  + +    +       + R GGEEF      S  +E  
Sbjct: 449 DIDNFKQFNDRYGHVAGDQCLKNIVNAAKSILKRPTDMLARYGGEEFMIVLPSSHLEEVY 508

Query: 194 ILANDLRKIIENSQINISSGPSIHI-TISAGIA--ERCHKEPISTIIYRADQALYVAKKS 250
             A  LR+ I + +I     P   I TISAGI   +   +   +++I RAD+ALY AK +
Sbjct: 509 QFAELLREKIISLEIPHEDSPHAGILTISAGITCWQLPQQLDANSLINRADEALYHAKLT 568

Query: 251 GRNR 254
           GRNR
Sbjct: 569 GRNR 572


>gi|262172265|ref|ZP_06039943.1| C-di-GMP phosphodiesterase A-related protein [Vibrio mimicus
           MB-451]
 gi|261893341|gb|EEY39327.1| C-di-GMP phosphodiesterase A-related protein [Vibrio mimicus
           MB-451]
          Length = 632

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 10/190 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           L     S+ K   ++ ++++QL+  D L+GL N S  +  L        + +   ++ + 
Sbjct: 167 LASTFQSMWKGKELAESKLNQLAYYDSLTGLANRSLLLKKLSDAITTAQNSHTTGTLFYL 226

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND+ GH +GD++I  ++ ++           R+GG+EFA      S  +A  
Sbjct: 227 DLDRFKTINDSLGHTIGDQLIKAVALRMEAWTKNDYLSARIGGDEFAVLIPYLSPNKAEE 286

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRN 253
           +A  L  +I N          ++ T+S GI+           ++ +AD ALY AK  GRN
Sbjct: 287 VAKQLLTLISN--PYTIDDHQLYCTVSIGISIFPSVGISNIDVLRQADTALYRAKAGGRN 344

Query: 254 RVVCFSDIEN 263
           + + +     
Sbjct: 345 KFMFYEPEMQ 354


>gi|37904133|gb|AAO43574.1| sensory box GGDEF family protein [Bacillus thuringiensis serovar
           canadensis]
          Length = 406

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 4/137 (2%)

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS- 187
           ++++F D+D FK+IND  GH VGD ++  ++ +L     +   V R GG+EF        
Sbjct: 10  VAVIFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMY 69

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYV 246
           SE+ A  +A  +  I+  ++     G  + IT S GIA        ++ ++  AD A+Y 
Sbjct: 70  SEKSAIFIAEQILTIL--NKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYR 127

Query: 247 AKKSGRNRVVCFSDIEN 263
           AK +G+NR V FS   +
Sbjct: 128 AKANGKNRFVFFSKEMS 144


>gi|253996593|ref|YP_003048657.1| diguanylate cyclase [Methylotenera mobilis JLW8]
 gi|253983272|gb|ACT48130.1| diguanylate cyclase [Methylotenera mobilis JLW8]
          Length = 364

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 63/202 (31%), Positives = 101/202 (50%), Gaps = 15/202 (7%)

Query: 70  SLVIISITIS-LLLGYISGSILKELFISYNRISQ----LSRIDCLSGLLNHSAFISSL-- 122
           SLV++ + IS LL+ Y     L E   S   +++    L+  D L+ L N   F   L  
Sbjct: 163 SLVVVFLIISILLINYRRTISLFEHASSSQELAEEFGYLAMHDALTHLPNRRNFEQYLKK 222

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
                G   +K+ +++ D+D FK IND +GH  GD  +     ++  V     F+ R+GG
Sbjct: 223 SISQAGRSKQKIGLLYMDLDGFKLINDQYGHDAGDDALVGAVAKINHVLRDSDFIARVGG 282

Query: 178 EEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPIST 235
           +EFA  A   +   E  ILAN + + +    I + +G  I + +S GIA    + + I  
Sbjct: 283 DEFALVAHNFNDASELLILANRIIEALNTPVIKV-TGTDIFMGVSIGIAIYPDQVKSIKA 341

Query: 236 IIYRADQALYVAKKSGRNRVVC 257
           +I  AD+A+Y AK +G+N+ V 
Sbjct: 342 LISAADEAMYKAKSTGKNQAVI 363


>gi|261854761|ref|YP_003262044.1| response regulator receiver modulated diguanylate cyclase
           [Halothiobacillus neapolitanus c2]
 gi|261835230|gb|ACX94997.1| response regulator receiver modulated diguanylate cyclase
           [Halothiobacillus neapolitanus c2]
          Length = 461

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 11/179 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
            + ++L  +  ++ Q S ID L+ + N   F                 +S++  D+DYFK
Sbjct: 277 RVTQQLADANRQLKQFSYIDGLTAIANRRKFDEYLMTTWRRAQQEGAPVSLILIDVDYFK 336

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           + ND+ GH  GD  +  ++  +    +       R GGEEFA     +   +A  +A  +
Sbjct: 337 RYNDSLGHEAGDHALMRVAKAVSSSLYRVKDLAARYGGEEFAVILPETELADALSVAERV 396

Query: 200 RKIIENSQINISSGPSIH-ITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
           R  + + ++       +  +T S G+ E         S +I  AD+ LY AK SGRN+V
Sbjct: 397 RSAVMSLELPHPDSTVMPVVTASLGVGEWRPTAFCEPSALINLADKGLYQAKASGRNQV 455


>gi|206578608|ref|YP_002239482.1| membrane-associated diguanylate cyclase [Klebsiella pneumoniae 342]
 gi|206567666|gb|ACI09442.1| membrane-associated diguanylate cyclase [Klebsiella pneumoniae 342]
          Length = 379

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 67/276 (24%), Positives = 124/276 (44%), Gaps = 33/276 (11%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIF---IANIFLFYIGLTPFYGLEYI 64
            L++ LC      S S + F+ ++++ F+  +  ++    +  ++  + G+  F    ++
Sbjct: 107 LLALSLC-----WSLSNYCFIFFWTLPFAWPLLVILMTTGLTALYHHWPGIIAFMLPMWV 161

Query: 65  LV-------------ENLSLVIISITISLLLGYISGSILKELFISYN-------RISQLS 104
                            L+L  I   I L    I      E + ++        R+  ++
Sbjct: 162 TALLAGVQIHYDGEFRFLTLWAIFTAILLYGRRILQRWYDEAWDTHQENMQLIQRLESIA 221

Query: 105 RIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
             D L+G  N  A   F++ L      L+++  D+DYFK+ ND++GH  GD  ++ ++  
Sbjct: 222 NRDALTGTANRRALNAFLAQLWEQKAPLALMMIDVDYFKRYNDHYGHQAGDDCLSSVAQV 281

Query: 162 LVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHIT 219
           L +        V R GGEEF  +  G S   A ++A  +++ I ++ +    S  +  +T
Sbjct: 282 LKMAVRAEDDLVARYGGEEFVVSLPGVSLAHATVIAERIQQKIHDAALPHEASAVAAVVT 341

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S G+       P+ T+I RAD ALY AK  GRN+ 
Sbjct: 342 VSMGVVASDGTVPMETLIARADSALYQAKNKGRNQW 377


>gi|73543375|gb|AAZ77792.1| PA5017-like protein [Pseudomonas aeruginosa]
          Length = 899

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 99/212 (46%), Gaps = 16/212 (7%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNH 115
           P++G        LSL  +   +  L  YI     + +  ++   I +L+  D L+GL N 
Sbjct: 430 PYWG-------QLSLSKVYDDLGELTHYIGIYEDITQNKLAQQHIEKLAYRDNLTGLANR 482

Query: 116 SAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
             FI +L        +  LS++  DID FK+IND+ GH  GDK++  L+ +L    G   
Sbjct: 483 HYFIGALEERLESSGDRPLSLLLVDIDNFKRINDSLGHQTGDKLLVSLARRLRSCLGDGA 542

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-H 229
            + R    EFA     ++ ++   +A  +  +++           I+IT S G+A    H
Sbjct: 543 TLARFASNEFAVLLDDTAVEKGESIAAQVLHMLDKPLF--VDNQLINITGSIGLASAPQH 600

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                T++  A  AL+ AK +G+++V  F++ 
Sbjct: 601 GCDPQTLMKYAGLALHKAKANGKHQVQVFTEA 632


>gi|27365079|ref|NP_760607.1| C-di-GMP phosphodiesterase A-like protein [Vibrio vulnificus CMCP6]
 gi|37680869|ref|NP_935478.1| c-di-GMP phosphodiesterase A-related protein [Vibrio vulnificus
           YJ016]
 gi|27361225|gb|AAO10134.1| C-di-GMP phosphodiesterase A-related protein [Vibrio vulnificus
           CMCP6]
 gi|37199618|dbj|BAC95449.1| c-di-GMP phosphodiesterase A-related protein [Vibrio vulnificus
           YJ016]
          Length = 687

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 61/250 (24%), Positives = 115/250 (46%), Gaps = 14/250 (5%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIF-LFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
           T ++ F +F +I + +++     F L    +T    +  +     +L +     +  LG 
Sbjct: 160 TRIVLFDLFRNILLTSILLFFFYFKLSKPIITLINWVNSLQNRKNALELPPGNNNDELGR 219

Query: 85  ISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           ++ S   + +    + ++++QL+  D L+GL N S  + SL        S      + + 
Sbjct: 220 LALSFHNLWQARAAAESQLNQLAYFDTLTGLANRSLLLKSLNETLKESQSEQYPGVLFYL 279

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND+ GH +GD ++  ++ +L           R+GG+EFA      ++++AA 
Sbjct: 280 DLDRFKTINDSLGHTIGDNLMRTIAKRLEAWLQPGEIAARIGGDEFAILIPKLNKEDAAN 339

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253
            A  L  +I N          ++ T+S GI+    K      ++ +AD ALY AK +GRN
Sbjct: 340 KAKQLLTLISN--PYSIDDHQLYCTVSIGISTFADKGISSIDVLRQADTALYRAKVAGRN 397

Query: 254 RVVCFSDIEN 263
           + + +     
Sbjct: 398 KYMFYEPEMQ 407


>gi|307822553|ref|ZP_07652784.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
 gi|307736157|gb|EFO07003.1| diguanylate cyclase [Methylobacter tundripaludum SV96]
          Length = 325

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 79/183 (43%), Gaps = 12/183 (6%)

Query: 86  SGSILKE-LFISYNR-ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDI 136
           S SI +E +  S++  + + +  D L+ + N   F +               LSI   DI
Sbjct: 132 STSIKREKMLRSHSEILKKEATTDSLTDICNRRFFDAHYEMAVAEAKRQKHPLSIFMVDI 191

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           D+FK  ND +GH  GD  I  ++  L   +      V R GGEEF        ++ A   
Sbjct: 192 DFFKSYNDYYGHIAGDNAIKQVASALKSQLSRATDIVARYGGEEFVLVMPHLPQKVAEQF 251

Query: 196 ANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  LR  + N  +          ITIS G+     +     ++ +AD ALY AK  GRNR
Sbjct: 252 AEKLRSAVFNLAMPHIKSRPFNQITISVGLCTGIPEND-DNLLNKADAALYQAKLKGRNR 310

Query: 255 VVC 257
            +C
Sbjct: 311 CIC 313


>gi|262380496|ref|ZP_06073650.1| WspR [Acinetobacter radioresistens SH164]
 gi|262297942|gb|EEY85857.1| WspR [Acinetobacter radioresistens SH164]
          Length = 566

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 116/251 (46%), Gaps = 15/251 (5%)

Query: 14  CHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI 73
             +K + + S     ++ +IF  ++    +F   I    + L         +  +  L  
Sbjct: 323 AWKKFILTLSVSVISVFTAIFTMVYARYKVFTPLIRARNLILKLAGHQNARIQSSDILYP 382

Query: 74  ISI--TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS---LGSYNEK 128
           +S+   I  L   ++   + EL     ++  ++  D L+G+ N  A       L  + ++
Sbjct: 383 LSLFEAIQKLQAQLAERDVLEL-----QLRNIANTDILTGVSNRLALDEHIQYLEKHVKQ 437

Query: 129 LS---IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           LS   ++  DIDYFKQ+ND +GH +GD+VI  ++ QL     +   + R GG+EF     
Sbjct: 438 LSQTCLILVDIDYFKQVNDQYGHIIGDQVIQLVASQLKKSVRSSDLIIRYGGDEFIIFLE 497

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
                    +   +R  ++ + + + +G SI +++S G+A     E    ++ +ADQAL+
Sbjct: 498 YVEFGAVLKVVEKIRAEVQQAHLKLENGNSISVSVSIGVAT--GAENWLELLEKADQALF 555

Query: 246 VAKKSGRNRVV 256
            AK +GRN V 
Sbjct: 556 RAKAAGRNSVA 566


>gi|222086805|ref|YP_002545339.1| urease-associated protein [Agrobacterium radiobacter K84]
 gi|221724253|gb|ACM27409.1| urease-associated protein [Agrobacterium radiobacter K84]
          Length = 285

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 86/261 (32%), Positives = 124/261 (47%), Gaps = 5/261 (1%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFS----IFIATVIFIANIFLFYIGLTPFYGLEYI 64
           +  W+  +  L  F     + +F++  S    +    +I +    + + GL P   L+ +
Sbjct: 1   MKQWISLQAELGDFQCRRTIYFFALKMSCAAIVLSVAIILLMLPAVQWFGLLPLPMLDAV 60

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
            +  L    I   +S  L  ++G  + +L +S     +LSR D LSGLLN  AF  +L  
Sbjct: 61  RLCILLASFIGGIVSAALALLAGHAIHKLALSNAEFERLSRTDMLSGLLNRRAFTEALDR 120

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
                S+V FD+D FK IND +GH  GD VI  +S     +FG    V RLGGEEF A  
Sbjct: 121 VEADASLVIFDVDRFKTINDRYGHASGDAVIIAVSQIFSSIFGGRDVVARLGGEEFGAIV 180

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
            G    E      D++ +I    I +  G  + ITISAGIA+             AD+AL
Sbjct: 181 HGHDMAERIARIEDVKALIAEHAIAVEGGA-VTITISAGIADIWGPRRKEAAYAAADKAL 239

Query: 245 YVAKKSGRNRVVCFSDIENNT 265
           Y+AK  GRNR+V  S+  N  
Sbjct: 240 YLAKALGRNRIVHESEWMNQA 260


>gi|254506358|ref|ZP_05118501.1| intracellular signaling protein (pas,gaf,ggdef domains) [Vibrio
           parahaemolyticus 16]
 gi|219550838|gb|EED27820.1| intracellular signaling protein (pas,gaf,ggdef domains) [Vibrio
           parahaemolyticus 16]
          Length = 353

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 31/245 (12%)

Query: 38  FIATVIFIANIFLFYIGLT---PFYG-LEYILVENLSLVIISITISLLLGYISGSILKEL 93
           +I   IFI +     +  +   P+      I V+ L L+   I + L    I     + L
Sbjct: 116 YIGVPIFIDDEIFGTLNFSSAVPYPRKFREIDVDALKLMASWIEVEL----IRRKQEERL 171

Query: 94  FISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146
                R+   +  D L+G+ N  +        I  +     K ++   DID+FK +NDN 
Sbjct: 172 QQLNARLEYQAYHDTLTGVANRRSLFKTVHLDIERMKRAGGKGTLAIVDIDHFKLVNDNH 231

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH +GD V+  ++  +        F+ R GGEEF       + +E   +   +R  + + 
Sbjct: 232 GHQIGDDVLKKVATAIQAQLVESDFIARFGGEEFVVWLPERALEERRSIIEKVRTCVNSI 291

Query: 207 QINISSGPSIHITISAGIAER---------CHKEPISTIIYRADQALYVAKKSGRNRVV- 256
              +  G    IT+S G  E          C+K  +  II+ AD  LY AK +GRN  V 
Sbjct: 292 ---LVDGQ--PITVSVGACEFDFSSLVNQQCNKATLDEIIHIADDNLYRAKDAGRNTTVR 346

Query: 257 -CFSD 260
            C+S+
Sbjct: 347 SCWSE 351


>gi|326390990|ref|ZP_08212539.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992935|gb|EGD51378.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 769

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 20/224 (8%)

Query: 56  TPFYGLEYILV--ENLSLVIISITISL-------LLGYISGSILKELFISYNRISQLSRI 106
           TPFY  EY +   +   + I+S   +L       +    S + + E     +++  ++  
Sbjct: 275 TPFYLCEYRIKTKDGRYIWILSRGKALWDEDGRAIRMAGSHTDITERKQMESKLKYMAFY 334

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL     F+  L           +KL++ F D+D FK IND+ GH +GD+++  ++
Sbjct: 335 DPLTGLPRREIFMDRLKIAMADAKRNGKKLAVFFVDLDNFKTINDSLGHHIGDRLLKKIA 394

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHI 218
            +L         V R+GG+EF        +  +   +AN + ++  N  I   +   +H+
Sbjct: 395 KKLKACLRESDTVSRVGGDEFVILLPDIINMDDTNKVANRILELF-NQPIKF-NNHELHV 452

Query: 219 TISAGIAERCHKEPISTII-YRADQALYVAKKSGRNRVVCFSDI 261
           TIS GIA          +I   AD A+Y AK+ G+N    F  I
Sbjct: 453 TISIGIAIYPDHGKNERVIVKNADIAMYRAKRDGKNGFQYFDSI 496


>gi|291567645|dbj|BAI89917.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 553

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 97/231 (41%), Gaps = 16/231 (6%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
           I+  +L  IG+       Y+L  +L  V  S    +     S   +++L      +S L 
Sbjct: 319 ISAYYLESIGIIKSLNNHYLLACDLYRVYFSYK-PIFPQVPSSIYIEQLERDNQYLSNLV 377

Query: 105 RIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            +D L+ + N S F  +     E        L+++  DIDYFK  ND FGH  GD  +  
Sbjct: 378 YVDELTKVANRSQFQKAFKMEWECMAIKHNPLALIVCDIDYFKLYNDTFGHLAGDVCLQK 437

Query: 158 LSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
           ++  +          + R GGEEF      +  + A  +A  +   ++   I      S+
Sbjct: 438 VAQAIQHNLQRPNDLLARYGGEEFVVLLPQTDGKGAMFVAAKICLAVKELAIASGVPKSV 497

Query: 217 H-----ITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFSD 260
                 +TIS GIA           T+   ADQALY +KK+GR+R    S+
Sbjct: 498 DSQHPVVTISIGIASIIPSSDYHPETLFMAADQALYESKKAGRDRYTMSSE 548


>gi|187780166|ref|ZP_02996639.1| hypothetical protein CLOSPO_03762 [Clostridium sporogenes ATCC
           15579]
 gi|187773791|gb|EDU37593.1| hypothetical protein CLOSPO_03762 [Clostridium sporogenes ATCC
           15579]
          Length = 419

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 89/180 (49%), Gaps = 11/180 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
             + E  I  ++  Q++  D L+ L N ++F+  L             L+I+F D+D FK
Sbjct: 240 RDITERKIYNDKTKQMAYFDSLTELPNRNSFLKQLEHEIKLSRKKQTILAIMFLDLDKFK 299

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
           ++NDNFGH  GDK++  ++ ++     +   + R GG+EF       + E++   LA D+
Sbjct: 300 EVNDNFGHCTGDKLLWQVAKRVKNTISSKDLIARFGGDEFTILIRDIAYEKQVEDLARDI 359

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            ++    +     G  ++I  S GI+      +    +I +AD+A+Y AKK G N+   +
Sbjct: 360 IEVFR--EPIYIEGIYVNIKTSIGISFFPKDGDTSQELIKKADKAMYDAKKRGSNKFQIY 417


>gi|113866723|ref|YP_725212.1| putative sensor protein [Ralstonia eutropha H16]
 gi|113525499|emb|CAJ91844.1| predicted signal transduction protein containinga membrane domain,
           an EAL and a GGDEF domain [Ralstonia eutropha H16]
          Length = 1132

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 89/208 (42%), Gaps = 9/208 (4%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS- 124
           V++ +  +++    +L   +    +         +++ +  D L+GL N + F   L   
Sbjct: 652 VQDSAAPVLTARGEVLGAVLVFQDITTARALQRELARSAMHDALTGLPNRTWFEKRLREA 711

Query: 125 ------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                 +  + ++ F D+D FK +ND  GH  GD ++  L   +         + RLGG+
Sbjct: 712 CDAARLHGHRAALCFIDLDRFKIVNDTAGHGAGDVLLRELGYMIRNHVRPDDVLARLGGD 771

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTII 237
           EFA      +  +A  +   +   I   +     G    +  S GIA       P+S ++
Sbjct: 772 EFALLLKDCTVDQAEQVCQGVIDAIRGRRFPW-EGRVYDMGASIGIAAIDLDVPPVSELM 830

Query: 238 YRADQALYVAKKSGRNRVVCFSDIENNT 265
            RAD A Y AK +GR+RV  +   E++ 
Sbjct: 831 SRADVACYAAKAAGRSRVSVYRRDESDA 858


>gi|254234314|ref|ZP_04927637.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126166245|gb|EAZ51756.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 1120

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 14/189 (7%)

Query: 83  GYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           G I G++L      +       +S  +  D L+GL N + F   L            + +
Sbjct: 659 GEIIGTVLVFQNVTKARAMQRELSYHASHDALTGLFNRTKFEEELQRALANAQERATQHA 718

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           + F D+D FK +ND+ GH  GD ++  LS  L         + RLGG+EF          
Sbjct: 719 LCFIDLDRFKVVNDSAGHAAGDMLLRELSRILADRTRASDTLARLGGDEFGLLLFDCDLA 778

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKK 249
           EA  +A+ L + I + +     G    +  S GI A        S ++ +AD A Y AK 
Sbjct: 779 EAEQVASKLIEQICSVRFPW-EGRLYDVGASIGITALTATSRSTSELMSQADVACYAAKH 837

Query: 250 SGRNRVVCF 258
           +GRNRV  +
Sbjct: 838 AGRNRVSVY 846


>gi|307266512|ref|ZP_07548046.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918492|gb|EFN48732.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 770

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 20/224 (8%)

Query: 56  TPFYGLEYILV--ENLSLVIISITISL-------LLGYISGSILKELFISYNRISQLSRI 106
           TPFY  EY +   +   + I+S   +L       +    S + + E     +++  ++  
Sbjct: 276 TPFYLCEYRIKIKDGRYIWILSRGKALWDEDGRAIRMAGSHTDITERKQMESKLKYMAFY 335

Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL     F+  L           +KL++ F D+D FK IND+ GH +GD+++  ++
Sbjct: 336 DPLTGLPRREIFMDRLKIAMADAKRNGKKLAVFFVDLDNFKTINDSLGHHIGDRLLKKIA 395

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHI 218
            +L         V R+GG+EF        +  +   +AN + ++  N  I   +   +H+
Sbjct: 396 KKLKACLRESDTVSRVGGDEFVILLPDIINMDDTNKVANRILELF-NQPIKF-NNHELHV 453

Query: 219 TISAGIAERCHKEPISTII-YRADQALYVAKKSGRNRVVCFSDI 261
           TIS GIA          +I   AD A+Y AK+ G+N    F  I
Sbjct: 454 TISIGIAIYPDHGKNERVIVKNADIAMYRAKRDGKNGFQYFDSI 497


>gi|311232702|gb|ADP85556.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris RCH1]
          Length = 1065

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 12/203 (5%)

Query: 67  ENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
           E LS+  I         Y++    + +L     +I      D L+GL N +  +  L   
Sbjct: 585 EWLSISAIRDESGATTNYVALFHDISDLKAKEAQIRYQGMHDALTGLPNRALLLERLAGE 644

Query: 126 -------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                       +++ DID FK IND+ GH  GDK IA +++ L ++      + RLGG+
Sbjct: 645 LKEGQGTGRLCGLLYIDIDNFKTINDSLGHEAGDKFIAEVAEHLTLLIRPEDTLSRLGGD 704

Query: 179 EFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTI 236
           E+        E+ E  ++A  +      SQ        +H+ +S GIA      +    +
Sbjct: 705 EYVILVANPGEEREVVLVAERILHHF--SQPIALLDRELHVGLSIGIAIHPADGKGPDEL 762

Query: 237 IYRADQALYVAKKSGRNRVVCFS 259
           +  AD A+Y AK  G+N    FS
Sbjct: 763 LTNADLAMYRAKAQGKNTYERFS 785


>gi|209965838|ref|YP_002298753.1| hypothetical protein RC1_2560 [Rhodospirillum centenum SW]
 gi|209959304|gb|ACI99940.1| GGDEF domain protein [Rhodospirillum centenum SW]
          Length = 315

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 79/183 (43%), Gaps = 12/183 (6%)

Query: 87  GSILKELFISYNRISQL-----SRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFF 134
               +E      RI +      S ID L+GL N +     L               I   
Sbjct: 122 AERFEEFMAQCRRIERAFGAAGSSIDPLTGLRNRTGLYEELEREMNRFRRTGRPFCIALC 181

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK +ND +GH  GD+V+   +  +           RLGGEE       +S  E A 
Sbjct: 182 DLDRFKSVNDTYGHDAGDRVLVATAGAVNRGIRNFDEAFRLGGEEILILLKDASLTEGAG 241

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           +   LR  I   Q+ I+ G SI +T S G+AE         +   AD+ALY AK++GRNR
Sbjct: 242 VLERLRADIAAQQVLIADGRSISVTASFGVAEADLTVHPEDLPSIADRALYEAKRAGRNR 301

Query: 255 VVC 257
           VV 
Sbjct: 302 VVL 304


>gi|192361108|ref|YP_001982137.1| hypothetical protein CJA_1657 [Cellvibrio japonicus Ueda107]
 gi|190687273|gb|ACE84951.1| conserved domain protein [Cellvibrio japonicus Ueda107]
          Length = 239

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 9/181 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138
           +  +L EL      +    R D L+GL N+  F       +       + LS+V  D+DY
Sbjct: 23  NTQLLGELQQQVRDLQAQVRTDALTGLYNYRFFSDTLLLEMERTRRSFQPLSLVLLDLDY 82

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK  ND +GH  G++ +  L+  +        F  R GGEEFA     +  + A  +A  
Sbjct: 83  FKAFNDRWGHDAGNQALVHLAGVVNQGLRKLDFACRYGGEEFALILPNTDLRHAVSVAER 142

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVV 256
           +R+++ +S + + +G +  +T S G+ E      E       R D  LY AK +GRNRV 
Sbjct: 143 VRELLVSSPLIMPTGETCALTASFGVDEFAGQLNESPEEFTRRVDYWLYQAKLTGRNRVA 202

Query: 257 C 257
           C
Sbjct: 203 C 203


>gi|163783179|ref|ZP_02178173.1| hypothetical protein HG1285_14184 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881513|gb|EDP75023.1| hypothetical protein HG1285_14184 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 278

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/182 (31%), Positives = 91/182 (50%), Gaps = 14/182 (7%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS---AFISSLGSYNEK-LSIVFFD 135
           +L+G I+G+ +         + + + ID L+GL N          L     K L ++F D
Sbjct: 105 ILVGIITGTDI------LKGLPRFALIDPLTGLENRRVLDYLNQKLSRQKAKDLFVLFID 158

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           ID FK+IND +GH  GDKV+  +++ ++    T   V R GGEE         E+EA  +
Sbjct: 159 IDDFKKINDTYGHVFGDKVLKKVAEAILSSVRTYDNVIRYGGEEIVVVLHRVDEREAVEI 218

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           AN +R  + +  I     P + +++S GIA       +   I  AD+A+Y AK+ G++RV
Sbjct: 219 ANRIRDHVRS--IKFKEHPEVRVSVSIGIAPYRG--SLLKTIELADKAMYQAKRKGKDRV 274

Query: 256 VC 257
             
Sbjct: 275 EV 276


>gi|150396684|ref|YP_001327151.1| diguanylate cyclase [Sinorhizobium medicae WSM419]
 gi|150028199|gb|ABR60316.1| diguanylate cyclase [Sinorhizobium medicae WSM419]
          Length = 398

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 107/234 (45%), Gaps = 13/234 (5%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG---YISGSI 89
           I   + +   +         I           L    +L+  ++  +L++G    I G +
Sbjct: 151 ILVGLLVLNALHFLGKVYAAIAAGAGSTASDYLQSPFALISQALGAALIVGTGVAILGVM 210

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQIN 143
           +K++  +       S ID LSGL N   FI  +       +     +++  D+D FK +N
Sbjct: 211 VKDIVDAA---RASSEIDSLSGLWNRRGFIERVAPWLLSRNAKSPGALILTDLDRFKGVN 267

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD+VI   +  L+ +  +     RLGGEEFA    G    +A ++A  +R  I
Sbjct: 268 DTYGHHTGDEVIRQFARVLLDLIPSRAAAARLGGEEFAVFLPGVDLADARVVAQGMRAAI 327

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            ++ I      +  IT S G+A     E +   + RAD+ALYVAK +GRNRV C
Sbjct: 328 ASTPI-ADLPETATITASFGVAAIAPGESLEMALQRADKALYVAKAAGRNRVEC 380


>gi|90409982|ref|ZP_01217999.1| hypothetical ScrC (sensory box/GGDEF family protein) (involved in
           swarmer cell regulation) [Photobacterium profundum 3TCK]
 gi|90329335|gb|EAS45592.1| hypothetical ScrC (sensory box/GGDEF family protein) (involved in
           swarmer cell regulation) [Photobacterium profundum 3TCK]
          Length = 776

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 23/243 (9%)

Query: 43  IFIANIF---LFYIGLTPFYGLEYILVENLSLVIISITIS------LLLGYISGSILKE- 92
           IF +  F   L ++     +GL YI   N + +I+             L   +  + +E 
Sbjct: 268 IFTSGWFIAGLSFLSFPVIFGLLYIFKINSANIILRTKFEESNKQHRALSDKNVRLTEEI 327

Query: 93  --LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
               IS  +++  +  D L+GL N       L             + +++ D+D FKQIN
Sbjct: 328 DKRKISEEKLAYQASHDALTGLPNRKYGNERLEQELFRAKRNKTNVLVMYIDLDNFKQIN 387

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKI 202
           D  GH  GD+++   + +L+        + RLGG+EF            A +LA  +  +
Sbjct: 388 DTLGHLAGDQILKLSTSRLLGSVRHSDILARLGGDEFLLVIPDLKDLNSAKLLATTIVSL 447

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              ++          ++ S G++      +    ++  AD A+Y  K+ GRN    +S  
Sbjct: 448 F--NKPFFWQKQEFFVSTSIGLSVFPQDGDNAPQLLASADTAMYRVKQDGRNAFSFYSTD 505

Query: 262 ENN 264
            N 
Sbjct: 506 MNK 508


>gi|325917091|ref|ZP_08179324.1| diguanylate cyclase with GAF sensor [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536667|gb|EGD08430.1| diguanylate cyclase with GAF sensor [Xanthomonas vesicatoria ATCC
           35937]
          Length = 356

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + + +R D L+GL N  AF ++L +        ++ LS+   D+D+FK +ND  GH  GD
Sbjct: 196 LVEQTRTDPLTGLPNRRAFTAALAAATQQTHIASQPLSVALLDVDHFKVVNDVHGHDQGD 255

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  LS  L         + R GGEEF         Q+A +    LR+ +    I +  
Sbjct: 256 LVLRELSALLRAHVAGAGTIARYGGEEFVLLLPNVDLQQARVQCEYLRQSVATMSIALP- 314

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                +T+S G+A     E +  +I RADQALY AK+ GR++VV 
Sbjct: 315 -----VTVSIGVAMLYPHESVEAVIKRADQALYAAKRGGRDQVVA 354


>gi|294677710|ref|YP_003578325.1| diguanylate cyclase/phosphodiesterase [Rhodobacter capsulatus SB
           1003]
 gi|294476530|gb|ADE85918.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodobacter capsulatus SB 1003]
          Length = 831

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 10/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQI 142
            + + F +  RI+ L+  D L+GL N + F+  L        +    +++  D+D FK++
Sbjct: 390 DVTDRFEAVERIAYLAHHDGLTGLPNRALFLDRLEAALGRVRHARGCAVLLIDLDRFKEV 449

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRK 201
           N+  GH  GD+++  ++ +L         + RLGG+EFA     +   Q  + LA  L  
Sbjct: 450 NETLGHAAGDRLLCAVAARLRAEVSAADTLARLGGDEFAVLLTETEAPQTVSALAERLIA 509

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            IE        G  I I  S GIA           ++  AD AL  AK  G   +  F+ 
Sbjct: 510 AIEAE--FDLDGRRIGIGASLGIAMAPSDGLSPKALVKAADVALCRAKADGSGCLRFFAP 567

Query: 261 IENN 264
             ++
Sbjct: 568 ESDS 571


>gi|270263681|ref|ZP_06191950.1| diguanylate cyclase [Serratia odorifera 4Rx13]
 gi|270042565|gb|EFA15660.1| diguanylate cyclase [Serratia odorifera 4Rx13]
          Length = 482

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 99/204 (48%), Gaps = 12/204 (5%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125
           L I  + +  L+   S ++ ++L     R+   +  D L+G+L  SA     G       
Sbjct: 275 LGIAMLVMGPLILASSIAVNRKLM---RRLEHSANHDFLTGVLARSALTRKAGELLEHKY 331

Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
              E +S++  DID+FK IND  GH VGD+ +A  +  +          GRLGGE+FA  
Sbjct: 332 KSKEAVSLLLIDIDHFKLINDTHGHEVGDQALATFAHIVRRELRHDQLFGRLGGEDFAIM 391

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRAD 241
              +   +   LA  LR++++ + +       + +TIS G+A     E   ++ ++  AD
Sbjct: 392 LPRALAAQGVALAEHLRQLVQKTDLYPGGKTPLKVTISVGVASLAMNEVKSLAQLMNMAD 451

Query: 242 QALYVAKKSGRNRVVCFSDIENNT 265
            ALY AK  GRNRV  F+ +  N+
Sbjct: 452 IALYRAKSQGRNRVESFNAVSGNS 475


>gi|258625533|ref|ZP_05720422.1| sensory box/GGDEF family protein [Vibrio mimicus VM603]
 gi|258582177|gb|EEW07037.1| sensory box/GGDEF family protein [Vibrio mimicus VM603]
          Length = 308

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 90/196 (45%), Gaps = 12/196 (6%)

Query: 73  IISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
           I+  T   ++G I   + + ++     ++ QL+  D L+ L N            +    
Sbjct: 112 ILQKTTGEVIGLIGVSTDITDIVELREQLYQLANTDALTQLCNRRKLWADFRSAFARAKH 171

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
             + LS +  DID FKQIND+FGH  GD+V+ FL+     +       GR+GGEEF    
Sbjct: 172 SKQPLSCISIDIDNFKQINDHFGHDKGDEVLCFLAQLFYELTSEHHICGRVGGEEFIIVL 231

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQA 243
             +    A  LA  +R+               H+ + AG+A  R      + I  R+DQA
Sbjct: 232 EDTPVATAFALAEQIRQRFSQHSFFEQKE---HVYLCAGVATMRLSDHDFTDIYRRSDQA 288

Query: 244 LYVAKKSGRNRVVCFS 259
           LY AK+SGRNR   ++
Sbjct: 289 LYQAKRSGRNRCCIYN 304


>gi|322420751|ref|YP_004199974.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Geobacter sp. M18]
 gi|320127138|gb|ADW14698.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. M18]
          Length = 594

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 12/193 (6%)

Query: 82  LGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVF 133
           LG ++    +        ++  L+  D ++ L N +  +  L            +L+++F
Sbjct: 133 LGMVTACEDITARKEFERQLETLAYYDTVTKLPNRALLMDRLHQALALAQREGRELALLF 192

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEA 192
            D+D FK +N   GH VGDK +  ++ +L         + R GG+EF      G  E+  
Sbjct: 193 LDLDNFKDLNSARGHEVGDKFLQEVAARLASCLCEANTLARPGGDEFVIVINSGPDEEGV 252

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
           A  A  L+ +    +     G  ++ + S GIA        + +++  AD ALY AK  G
Sbjct: 253 AATAARLQALF--IEPFGIDGEEVYGSTSIGIALFPEDGSDVESLLRCADAALYQAKSEG 310

Query: 252 RNRVVCFSDIENN 264
           +     FS   N 
Sbjct: 311 KGGYQFFSQEMNE 323


>gi|229131569|ref|ZP_04260454.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196]
 gi|228651887|gb|EEL07839.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196]
          Length = 569

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++     +     +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNKMIAEKIEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       +  E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKTHTHDEMRQLATSVLSCFQA-- 252

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 253 PFMLEGHEVYISASLGLCSYPQDGKDVETLLKNSDLAMYSAKEQGRNAACFFTDE 307


>gi|254447712|ref|ZP_05061178.1| diguanylate cyclase/phosphodiesterase [gamma proteobacterium
           HTCC5015]
 gi|198263055|gb|EDY87334.1| diguanylate cyclase/phosphodiesterase [gamma proteobacterium
           HTCC5015]
          Length = 1250

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 18/208 (8%)

Query: 75  SITISLLLGYI---SGSILKELFI---SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           ++T +LL  Y    SGS+  ++ I   S       +  D L+GL N   F   L    E+
Sbjct: 782 AVTPALLWSYAPDRSGSVFVQVQIVPESEAEQHSDAFHDFLTGLPNREFFKKLLSHSLEQ 841

Query: 129 --------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                    +++  D+D FK IND+ GH  GD+V+  ++ +LV       +V RLGG+EF
Sbjct: 842 SQRNTQYEFAVLMLDLDRFKVINDSLGHEEGDRVLQEVATRLVEAVRAGDYVARLGGDEF 901

Query: 181 AAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIY 238
           A    G  +  +A+ +A+D+++ ++ + +++    ++  + S GIA      + +  +I 
Sbjct: 902 AILLDGIGDDMDASDIASDIQRELQKT-LHLGEHEAVS-SASIGIALSSRGYQHVEDLIR 959

Query: 239 RADQALYVAKKSGRNRVVCFSDIENNTC 266
            AD A+Y AK  G+ +   FS   +   
Sbjct: 960 DADSAMYHAKNHGKAQHSVFSQEMHQRA 987


>gi|153000356|ref|YP_001366037.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|151364974|gb|ABS07974.1| diguanylate cyclase [Shewanella baltica OS185]
          Length = 341

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 12/209 (5%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKE------LFISYNRISQLSRIDCLSGL 112
           + +E +L    SLV  S  I     + +G + K       L     +  +    D L+G 
Sbjct: 128 FSVEQVLDLVRSLVKESDNIRSSTEFFTGQLQKAQTEIDALKKKLEQTEKDVLYDALTGC 187

Query: 113 LNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            N  AF S     L        ++  DID+FK  ND +GH +GD+V+  ++ +L      
Sbjct: 188 FNRRAFDSDFAGMLAQAPLGTCLILADIDHFKVFNDTYGHQLGDQVLRAVAKRLQESCRD 247

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITISAGIAE 226
            + + R GGEEF      S  + A  LA  +R+ +E   + +      I +I+ S G+A+
Sbjct: 248 GVKLYRFGGEEFVIIVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDERINNISASFGVAQ 307

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRV 255
              K+    +I  AD+ LY AK+ GRNRV
Sbjct: 308 WQEKQTGMQLIAAADKLLYDAKRLGRNRV 336


>gi|91226809|ref|ZP_01261462.1| sensory box/GGDEF family protein [Vibrio alginolyticus 12G01]
 gi|269965794|ref|ZP_06179890.1| sensory box/GGDEF family protein [Vibrio alginolyticus 40B]
 gi|91188940|gb|EAS75224.1| sensory box/GGDEF family protein [Vibrio alginolyticus 12G01]
 gi|269829592|gb|EEZ83830.1| sensory box/GGDEF family protein [Vibrio alginolyticus 40B]
          Length = 581

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 18/192 (9%)

Query: 84  YISGSILKELFISYNRISQ-------LSRIDCLSGLLNHSAFISSLG-------SYNEKL 129
            I    + E +++  ++ +       LS +D L+ + N   F   L             L
Sbjct: 385 LIMARDISERYLAEQKLEKANLELEKLSFMDSLTQVSNRRRFDEQLQVLWYHHAREKLPL 444

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSS 188
           +I+  DID+FK  ND +GH  GD+ +  ++     V   +   V R GGEEF      ++
Sbjct: 445 TIMLCDIDFFKDYNDCYGHQQGDEALVSVATVFTQVINRSSDCVARYGGEEFGFILPNTT 504

Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAER--CHKEPISTIIYRADQALY 245
            + A  +A  + + I    +   S   S  +T+S G+      H +     I  AD ALY
Sbjct: 505 TEGARNVAQRIHEKILQLDMEHDSSEASERLTVSIGLVSYIPQHGDEPEMGIAMADSALY 564

Query: 246 VAKKSGRNRVVC 257
            AK  GRNR   
Sbjct: 565 QAKADGRNRTCI 576


>gi|302130144|ref|ZP_07256134.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 705

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 96/216 (44%), Gaps = 15/216 (6%)

Query: 64  ILVENLSLVIISITISLLLGYI---SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
           +LV +LS++ I++   +L  ++   +  +   L  + + ++  +  D L+GL N +    
Sbjct: 220 VLVASLSVLSITLFCCILDSHLETRTAVLANSLVEANHELTHRALHDSLTGLPNRTLLTD 279

Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV--VFGTPMF 171
            +     K        +++F D+D FK +ND FGH  GD ++  ++ +L           
Sbjct: 280 RIEQTMNKVRENGGCFALMFMDLDGFKPVNDAFGHHTGDLLLRQVALRLRQNLHLHLHDT 339

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
           + R+GG+EF        +Q+A  +A   R++ E           + I++S GI     + 
Sbjct: 340 LARVGGDEFVLLVELQDQQDALAVAT--RQVNEIGNPFTIGEHQLQISLSIGICMYPGNG 397

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
                ++  AD A+Y  K +G+N    F    N+  
Sbjct: 398 TTQHELLVNADAAMYHTKAAGKNGYSFFDVSMNSNA 433


>gi|238750794|ref|ZP_04612292.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia rohdei ATCC 43380]
 gi|238710938|gb|EEQ03158.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia rohdei ATCC 43380]
          Length = 664

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFK 140
           SG+ + +   +  R+  L+  D ++GL N  A    + S  +      + I++ D+D FK
Sbjct: 218 SGTDITKERRAQERLRVLANTDMITGLPNRHAIHERINSAIQTRGDTSVGIIYLDLDNFK 277

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND++GH  GD+++  +S  ++        + RLGG+EF      ++ Q     A  + 
Sbjct: 278 KVNDHYGHMFGDRLLKDVSLAILSCLVDNEMLARLGGDEFIVLVENATMQMLETTAQRI- 336

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++   S GIA    H + +  II  AD A+Y AK++G+     F
Sbjct: 337 --LNRMKLPFRVGLIEVYTGCSIGIALCPEHGDTLENIIRSADTAMYTAKENGKQTYSIF 394

Query: 259 SDIENN 264
           S   N 
Sbjct: 395 SQQMNK 400


>gi|194444703|ref|YP_002040953.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194403366|gb|ACF63588.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 663

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRTQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSESLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 394 VFSPEMNQ 401


>gi|241207102|ref|YP_002978198.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860992|gb|ACS58659.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 779

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 11/191 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           ++   L E   +   I  L+  D L+ L N S F + +          N ++++ + D+D
Sbjct: 333 LAVRDLTERRQAEEMIEHLAHHDVLTDLPNRSLFDTRIRQALQMAERKNSEVALFYLDLD 392

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILA 196
            FK +ND FGH  GD+++  ++  L  V      + RLGG+EFA     G     A  LA
Sbjct: 393 RFKAVNDIFGHAEGDRILRKVASILRRVADESDTIARLGGDEFAIIQLAGQQPAAAQKLA 452

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
            D+      ++++ +  P+  + +S GIA           +   AD ALY  K  GR +V
Sbjct: 453 ADILGEFA-AEMDTARDPT-AVGVSVGIALYPADGMAAEELCNNADTALYRVKHDGRGKV 510

Query: 256 VCFSDIENNTC 266
             F    +   
Sbjct: 511 CFFDAEMDKAA 521


>gi|120603555|ref|YP_967955.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Desulfovibrio vulgaris DP4]
 gi|120563784|gb|ABM29528.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris DP4]
          Length = 1065

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 12/203 (5%)

Query: 67  ENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125
           E LS+  I         Y++    + +L     +I      D L+GL N +  +  L   
Sbjct: 585 EWLSISAIRDESGATTNYVALFHDISDLKAKEAQIRYQGMHDALTGLPNRALLLERLAGE 644

Query: 126 -------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                       +++ DID FK IND+ GH  GDK IA +++ L ++      + RLGG+
Sbjct: 645 LKEGQGTGRLCGLLYIDIDNFKTINDSLGHEAGDKFIAEVAEHLTLLIRPEDTLSRLGGD 704

Query: 179 EFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTI 236
           E+        E+ E  ++A  +      SQ        +H+ +S GIA      +    +
Sbjct: 705 EYVILVANPGEEREVVLVAERILHHF--SQPIALLDRELHVGLSIGIAIHPADGKGPDEL 762

Query: 237 IYRADQALYVAKKSGRNRVVCFS 259
           +  AD A+Y AK  G+N    FS
Sbjct: 763 LTNADLAMYRAKAQGKNTYERFS 785


>gi|82701462|ref|YP_411028.1| diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis
           ATCC 25196]
 gi|82409527|gb|ABB73636.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosospira multiformis ATCC 25196]
          Length = 951

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 8/173 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGD 152
            +   +  D L+GL+N   F   L    E+       ++++ D+D FK +ND  GH  GD
Sbjct: 525 EMRYQATHDALTGLINRHEFERRLKQVLERDKGADEHTLLYLDLDQFKIVNDTCGHLAGD 584

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +++  L+  L         + RLGG+EF           A  +A  LR+ ++  +  +  
Sbjct: 585 ELLKQLTSLLQAKLRKDDTLARLGGDEFGLLLERCPRGSAFRVAEVLRQTVQEFRF-VWE 643

Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
                + IS G+A     E   S ++  AD A ++AK  GRNRV  ++  + N
Sbjct: 644 ERIFSLGISIGLATFSGGEQTFSDVLRMADTACFLAKDKGRNRVQLYASDDKN 696


>gi|77459730|ref|YP_349237.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1]
 gi|77383733|gb|ABA75246.1| putative transmembrane sensory box GGDEF/EAL domain protein
           [Pseudomonas fluorescens Pf0-1]
          Length = 358

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 15/183 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFK 140
             + E   S + +  L+  D L+GL N       L    E       ++++VF D++ FK
Sbjct: 166 RDITEEKASASYLQHLAHFDPLTGLPNRLVLEERLSEALEHARMTETRVALVFIDLNGFK 225

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-----EQEAAIL 195
            IND +GH  GD+V+   + +L  +      V R+GG+EF     G +     + EA  +
Sbjct: 226 AINDRYGHAAGDRVLITTATRLKRILRVSDTVARIGGDEFVVILQGLAPGLNLQDEARSI 285

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
              +   IE S          HI  S G+A    H   +  +++ AD A+Y AK+SG N+
Sbjct: 286 CQKI--FIELSPPIPIGNEQRHIGTSLGVAVFPDHAPTMDRLLHIADLAMYEAKRSGNNQ 343

Query: 255 VVC 257
              
Sbjct: 344 YRL 346


>gi|121996982|ref|YP_001001769.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Halorhodospira halophila SL1]
 gi|121588387|gb|ABM60967.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Halorhodospira halophila SL1]
          Length = 823

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 83/174 (47%), Gaps = 10/174 (5%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           ++  L+  D  +GL N S  +  +         +E+ ++ F D+D FK +ND+ GH  GD
Sbjct: 379 QLQYLAEHDLTTGLPNRSWLLGRVAQGIRRASDSERFAVAFVDLDRFKVVNDSLGHDAGD 438

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211
           +++  ++++L  +  +   VGR GG+EF         +    +A  +++++   +  +  
Sbjct: 439 QLLRQVAERLGEMVRSGDEVGRHGGDEFLMLL--HDLESTEQVAQLVQRVLNRFRKPLRI 496

Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            G  + +T S G++           ++  AD A++ AK  G NR   F++  N 
Sbjct: 497 DGREVAVTPSVGLSVYPGDAADADGMVRAADTAMHRAKDEGGNRYRFFTEEMNR 550


>gi|238794532|ref|ZP_04638140.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia intermedia ATCC 29909]
 gi|238726112|gb|EEQ17658.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia intermedia ATCC 29909]
          Length = 664

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-----LGSYNEKLSIVFFDIDYFK 140
           SG+ + +   +  R+  L+  D ++GL N  A         L      + I++ D+D FK
Sbjct: 218 SGTDITKERRAQERLRILANTDMITGLPNRHAIHERINSAILTRGETSVGIIYLDLDNFK 277

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND++GH  GD+++  +S  ++   G    + RLGG+EF      +S       A  + 
Sbjct: 278 KVNDHYGHMFGDRLLKDVSLAILSCLGESEMLARLGGDEFIVLVENASMNLLEATAQRI- 336

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++   S GIA    H + +  II  AD A+Y AK+ G+     F
Sbjct: 337 --LNRMKLPFRVGLIEVYTGCSIGIALCPEHGDTLENIIRSADTAMYTAKEHGKQTYSIF 394

Query: 259 SDIENN 264
           S   N 
Sbjct: 395 SQKMNK 400


>gi|323976594|gb|EGB71682.1| GGDEF domain-containing protein [Escherichia coli TW10509]
 gi|327253426|gb|EGE65064.1| diguanylate cyclase domain protein [Escherichia coli STEC_7v]
          Length = 289

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 114/248 (45%), Gaps = 24/248 (9%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYI----LVENLSLVIISITISLLLGYISGS 88
           +   IF+  ++ + N++   +    + G+  I    ++ N+SL+ +S   S+   YIS +
Sbjct: 30  VTIMIFMWLILLLVNLYFNGLRCDIWNGVSVIAFCAVLYNISLLFMS-RYSVSTWYISRT 88

Query: 89  I------------LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSI 131
           I            +  +F +      ++  D L+ + N + F + L +           +
Sbjct: 89  IEVVSKLTVMVIFMCHIFSALRVTKNIAHRDPLTNIFNRNYFFNELKAQSASAQKTSYCV 148

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK++ND +GHPVGD+VI  +   +         + R+GGEEF      +  + 
Sbjct: 149 MIMDIDHFKKVNDTWGHPVGDQVIKTVVSIIGKSIRPNDLLARVGGEEFGVLLTETDTES 208

Query: 192 AAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKK 249
           A +LA  +R  +E    +         +TIS G +  +      + I   AD ALY AK+
Sbjct: 209 AKVLAERIRANVERLTGDNPEYAIPQKVTISIGAVVTQGSALNPNEIYRMADNALYEAKE 268

Query: 250 SGRNRVVC 257
           +GRN++V 
Sbjct: 269 TGRNKIVV 276


>gi|312134090|ref|YP_004001428.1| diguanylate cyclase [Caldicellulosiruptor owensensis OL]
 gi|311774141|gb|ADQ03628.1| diguanylate cyclase [Caldicellulosiruptor owensensis OL]
          Length = 296

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 60/191 (31%), Positives = 89/191 (46%), Gaps = 10/191 (5%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEK 128
           +T  + +  I  S ++  +   N++++L   D L+GL N       L             
Sbjct: 107 VTGKIFIEDIDLSDVQLTYQKINKLNELVVKDSLTGLYNRRFIDERLDVEIIRASFSKSY 166

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGS 187
            SI   DIDYFK++ND +GH  GDKV+   +D +         +  R GGEEF       
Sbjct: 167 FSIAMADIDYFKKVNDTYGHTAGDKVLQTFADIIRKNIRIESDWAARYGGEEFLIFFQNQ 226

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYV 246
               A  +A  +RK +EN+ I + +   I IT S GI+    +      +I  AD+ LY 
Sbjct: 227 KSINAFEIAERIRKELENTVIKLEN-FEIKITASFGISSLENYSMTSKELIKIADEKLYY 285

Query: 247 AKKSGRNRVVC 257
           AK SGRN+VV 
Sbjct: 286 AKNSGRNKVVI 296


>gi|27365538|ref|NP_761066.1| sensory box/GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|27361686|gb|AAO10593.1| Sensory box/GGDEF family protein [Vibrio vulnificus CMCP6]
          Length = 807

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 97/211 (45%), Gaps = 18/211 (8%)

Query: 65  LVENLSLVIISITISLLLGYISGS-------ILKELFISYNRISQLSRIDCLSGLLNHSA 117
           L+    L  +S+ +S  +G              K+L  S  +++  ++ D L+ L N S 
Sbjct: 331 LLLAFVLASLSLAVSQYIGRRFNQYQKRIRTDFKKLEQSQEQLAYQAKHDSLTKLPNRSL 390

Query: 118 F-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
                   I    +  ++L+++F D+D FK++ND  GH VGD+++  + ++   +     
Sbjct: 391 LEVQIVSGIQRCRASGKQLAVMFVDLDNFKKVNDQHGHKVGDELLLRVGEKFSQLLRAGD 450

Query: 171 FVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC- 228
            V R GG+EF       SS+ EA +LA  +R+ + +    I  G  +  + S G+A    
Sbjct: 451 SVARFGGDEFVFCFAELSSKDEAEMLAESVRRSLTDH--FILHGALVSTSCSVGVAMYPQ 508

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +    +I  AD  L+ +K   + +V+ + 
Sbjct: 509 DGDSADQLIANADIVLFRSKAQHKGQVMFYD 539


>gi|56419574|ref|YP_146892.1| hypothetical protein GK1039 [Geobacillus kaustophilus HTA426]
 gi|56379416|dbj|BAD75324.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 588

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 81/174 (46%), Gaps = 9/174 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           ++ L     +I  L  ID L+G+ N            S L  Y     +   D+D+FKQ+
Sbjct: 263 VRRLIEKKRKIDDLVLIDELTGVYNRKYLPRVYARLRSDLERYGAPSCLALLDLDHFKQV 322

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH  GD V+  L+  L         V R GGEEF      +S+ EA  +   L++ 
Sbjct: 323 NDRFGHLAGDAVLQKLAAFLRQHTRGVDTVVRFGGEEFVVWLAKTSKSEARAVLERLQRQ 382

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
               +I  + G  +  T SAG+ E    + P+   +  AD+ALY AK+ G NR+
Sbjct: 383 FAAEKIE-ADGALLSCTFSAGLVECDEPDRPLDYWLRLADKALYAAKRGGGNRI 435


>gi|120556162|ref|YP_960513.1| diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8]
 gi|120326011|gb|ABM20326.1| diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8]
          Length = 774

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 104/247 (42%), Gaps = 26/247 (10%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI--------------- 85
           TV      +  +  LTP    + I    ++L++  I   L+                   
Sbjct: 266 TVSVAQPYYEIFAPLTPAQNKQLIANSVMTLLVFGIVFWLIRSLTGQQRVLEALRLSERN 325

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLS-IVFFDIDY 138
           +  +++ L   + R S+ + ID LSGL N   F+              KLS ++F D+D 
Sbjct: 326 NQQLIERLETEHARSSRAASIDHLSGLFNRRQFLDVADSLVLEQRRQRKLSTMLFIDLDR 385

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAN 197
           FK IND+ GH +GD ++  ++ ++  + G      R GG+EF     G  SE +    A 
Sbjct: 386 FKSINDSLGHHIGDLLLQAVAGRIQRMLGKGDIAARFGGDEFVVLLAGDRSEADIEQWAA 445

Query: 198 DLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            L   +  S   +  G  ++ + S GIA      + I  +   AD A+Y AKK+GR +  
Sbjct: 446 ALTAHL--SAPYMLEGTELNTSPSIGIAISPRDGQSIDELTKCADAAMYSAKKAGRGQYR 503

Query: 257 CFSDIEN 263
            F    N
Sbjct: 504 FFDQSLN 510


>gi|330877049|gb|EGH11198.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 818

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 16/190 (8%)

Query: 83  GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIV 132
           G +SG++L    ++  R     +S  +  D L+GL+N S F   L    +        ++
Sbjct: 348 GVVSGAVLVLHDMTQERQYIADLSWQAAHDPLTGLVNRSEFERRLQQVLDDSTTGSHCLM 407

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F D+D FK +ND  GH  GD+++  L   L         + RLGG+EF    +  +   A
Sbjct: 408 FLDLDQFKLVNDTGGHAAGDELLRQLCRALPQGLRDGDTLARLGGDEFGVLLVDCTASTA 467

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI---IYRADQALYVAKK 249
             +A  LR+I++     +  G     T+S G+      +  +T+   +  AD A Y+AK+
Sbjct: 468 HDIAEALREIVQGLHF-MWKGRPFMTTVSIGLVHL--GDTPATLEGSLSAADMACYMAKE 524

Query: 250 SGRNRVVCFS 259
            GRNRV  +S
Sbjct: 525 KGRNRVQVYS 534


>gi|294340624|emb|CAZ89014.1| hypothetical protein; putative exported protein; putative PAS,
           GGDEF domain, EAL and GAF domains [Thiomonas sp. 3As]
          Length = 1744

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 84/192 (43%), Gaps = 16/192 (8%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDI 136
             +   + E       + + +  D L+G+ N   F++   +   +L       ++V FD+
Sbjct: 465 LFAFKDISERIQREVLLQEQALTDALTGVPNRRHFMAQAAARLRELVAQQKAAALVLFDL 524

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK +ND  GH  GD+V+  ++  L     +     RLGGEEF          +A   A
Sbjct: 525 DDFKLVNDTRGHACGDQVLQQVASLLQAKVRSQDVFARLGGEEFCLLLTDLDANQALQRA 584

Query: 197 NDLRKIIENSQINISSGPSIHI-TISAGIAERC--------HKEPISTIIYRADQALYVA 247
           +++R  I+        G ++ + T S G+A            +  ++ ++  AD ALY A
Sbjct: 585 DEMRLEIDGQVTQCPDGQALPLPTSSIGVAWCPAAALQGVDDETRLAVLMDCADTALYAA 644

Query: 248 KKSGRNRVVCFS 259
           K  G+NR V F 
Sbjct: 645 KAQGKNRCVLFD 656



 Score =  160 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 99/229 (43%), Gaps = 24/229 (10%)

Query: 45   IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
            +A + L +    P Y  +    EN+ L+       L+ G +    L+            +
Sbjct: 799  LAILALAWFSRHPAYAPDAQQAENVRLL-----ADLMAGALRRERLERKLRQR------A 847

Query: 105  RIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
              D L+ L N +A        IS      + L++   D+D FK +ND +GH  GD ++  
Sbjct: 848  TRDVLTQLPNRAALELHLSRAISRARRQQQILAVGMLDLDDFKPVNDQWGHAAGDALLRD 907

Query: 158  LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSI 216
             + ++        F+GRLGG+EF       ++Q +   + + L ++++ +  ++  G   
Sbjct: 908  FAQRIQQALRDTDFIGRLGGDEFVLVLENLTQQADLDTVLSRLHEVVQ-APFDLPDGQRA 966

Query: 217  HITISAGIAERCHK-EPISTIIYRADQALYVAK--KSGRNR-VVCFSDI 261
             + +S G+A           +I  AD ALY  K  KSGR R  + + ++
Sbjct: 967  SVGLSLGLALYPQDAADADALIRAADAALYACKSNKSGRARWWLLYDEL 1015


>gi|251771348|gb|EES51929.1| diguanylate cyclase/phosphodiesterase [Leptospirillum
           ferrodiazotrophum]
          Length = 825

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 13/197 (6%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLG 123
           LV+    +S+L   + GS+ K L +    +   +  D L+ L N   F            
Sbjct: 371 LVVRGFLVSIL--NVLGSV-KALSLYNKEVEYFAVRDPLTRLFNQRVFWELLDYEVGRAK 427

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            ++   ++   D+D FK++ND FGH VGD+ +  ++  L+        V R GG+EFA  
Sbjct: 428 RHDTSFAVCVVDLDDFKRVNDTFGHTVGDRYLKEMAALLLSGTRQGDIVARYGGDEFAFV 487

Query: 184 ALGSSEQEAAILANDLRKIIE--NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRA 240
                   A  + + +R+ I       ++   P I  ++S GIA    H      +   A
Sbjct: 488 LPEVDLAGATSIVDRIREKIAMFRMDPDVPGSPPIEASVSIGIALYPDHASNAQDLFSLA 547

Query: 241 DQALYVAKKSGRNRVVC 257
           D+ +Y AK+SG+N    
Sbjct: 548 DRMMYKAKQSGKNTFRA 564


>gi|254292004|ref|ZP_04962783.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|150422081|gb|EDN14049.1| GGDEF family protein [Vibrio cholerae AM-19226]
          Length = 443

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 103/230 (44%), Gaps = 18/230 (7%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102
           +F+A + ++ +       LE  +  N   V+ +      L  ++ S    L     ++ +
Sbjct: 219 LFLAMLIMWAVAGAWLSALE--IRRNRREVLRARMRQEHLQRLNHS----LHEQNIKVVE 272

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++  D L+G +N       L             +S++F DIDYFKQ+ND +GH +GD ++
Sbjct: 273 MAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDLL 332

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +  +         + R GGEEF      ++ ++A  LA  LR  I +          
Sbjct: 333 REFALVISREIRESDKLVRWGGEEFVVFCAQTTLEQAIELAERLRAKIADHSWIHGGA-- 390

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             IT S GIA+    E I+  + RAD+ALY AK+ GRNR+     +   +
Sbjct: 391 --ITCSIGIAQM-GDERITETVSRADEALYRAKRLGRNRIEVHYGLMAKS 437


>gi|145300080|ref|YP_001142921.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852852|gb|ABO91173.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 539

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 12/172 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           K L I  +++     +D L+ + N +A    L         YN  L +   DID+FK IN
Sbjct: 370 KRLTIQKHKL----FLDSLTQVHNRAALDERLELEYKRWLRYNTPLCLAIIDIDHFKNIN 425

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           DN+GH  GDK +  ++  L        F+ R GGEEF       +  +       LR+ I
Sbjct: 426 DNYGHMAGDKALKVVAKALQGALRDTDFIARFGGEEFVVLLPNINPDKYQKPLETLRQTI 485

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++          + ITIS G       +  +    RAD+ALY +K SGR++V
Sbjct: 486 KSIPFRFRD-ARVEITISIGATLFREGDHTTDAFERADKALYSSKHSGRDQV 536


>gi|187920532|ref|YP_001889564.1| PAS/PAC sensor-containing diguanylate cyclase [Burkholderia
           phytofirmans PsJN]
 gi|187718970|gb|ACD20193.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia phytofirmans
           PsJN]
          Length = 341

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 73/177 (41%), Gaps = 10/177 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIN 143
           ++L      +  LS  D L+G+ N  AF +SL             LS+V  DID+FK  N
Sbjct: 160 EKLAALQRELEALSFKDSLTGVGNRRAFDASLEREWSAALRHAAPLSLVMVDIDFFKSYN 219

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GD+ +  ++  L        FVGR GGEEF      +    A  +A   R  I
Sbjct: 220 DYYGHVQGDECLRRVAGVLSSAVRPGDFVGRFGGEEFVLLLPNTGADAARQVAERCRNRI 279

Query: 204 ENSQINISSGP-SIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVC 257
              +I     P    +T S G+              +   D  LY AK +GR+ +  
Sbjct: 280 AAEEIAHERSPFRQTVTASFGVGTTIPAGAADPVAFVNLVDTQLYHAKDNGRDCIAA 336


>gi|70734011|ref|YP_257651.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens
           Pf-5]
 gi|68348310|gb|AAY95916.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           fluorescens Pf-5]
          Length = 897

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + +  ++  RI +L+  D L+ L N  AFI +L        +  +S++  DID FK+IN
Sbjct: 454 DITQTKLAQQRIERLAYTDNLTNLGNRPAFIRNLDERFARDSDTPISLLLVDIDNFKRIN 513

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++  L+ +L         + R    EFA     +  +    +A+ L   +
Sbjct: 514 DSLGHQTGDKLLISLARRLRNSLSPSGSLARFASNEFAVLLDNTDLETGQQIASQLLMTL 573

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I +T S G+A    H     T++  A  AL+ AK +G+++V  F++  
Sbjct: 574 DKPMF--VDNQLISVTGSVGLASAPLHGRDPQTLMRNAGLALHKAKANGKHQVQVFTEAL 631

Query: 263 NNTC 266
           N   
Sbjct: 632 NAEA 635


>gi|260773892|ref|ZP_05882807.1| sensory box/GGDEF family protein [Vibrio metschnikovii CIP 69.14]
 gi|260610853|gb|EEX36057.1| sensory box/GGDEF family protein [Vibrio metschnikovii CIP 69.14]
          Length = 466

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 96/201 (47%), Gaps = 19/201 (9%)

Query: 65  LVENLSLVIISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           L E L +  I     ++  Y++  + + +     N++ + S  D L+G+ N   F   + 
Sbjct: 265 LTEILRIQTILDDQEVIQYYVASFVDITQHKALENKLREQSEKDALTGIWNRRKFDQQIR 324

Query: 124 SYNEKL---------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
               ++          +   DID+FK+IND FGH  GD VI  +++ L        F+ R
Sbjct: 325 LECHRVKRYPEHEHSCLAILDIDHFKRINDQFGHSHGDYVIQSVAETLRDGLRESDFLAR 384

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
           +GGEEFA     +  +EA  +   LR       I +    + +++ISAGI++    E   
Sbjct: 385 IGGEEFAIILPHTPIEEAQAVIERLR-------IKVYQLHAQNVSISAGISDIMGSE--Q 435

Query: 235 TIIYRADQALYVAKKSGRNRV 255
               RAD+ALY +K +GRN+V
Sbjct: 436 ETYQRADKALYESKATGRNQV 456


>gi|225872418|ref|YP_002753873.1| cyclic diguanylate phosphodiesterase/diguanylate cyclase
           [Acidobacterium capsulatum ATCC 51196]
 gi|225794342|gb|ACO34432.1| cyclic diguanylate phosphodiesterase/diguanylate cyclase
           [Acidobacterium capsulatum ATCC 51196]
          Length = 806

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 11/186 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + E    + ++   +  D L+GL N       +          + +++ V  D+D FKQI
Sbjct: 363 VTEREELHQQLLYQAHHDLLTGLPNRLLLKDRMQQTLTRASRQDRRVAFVCIDLDRFKQI 422

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRK 201
           NDN+GH VGD+ +  ++++L         + R GGEEF A      S Q+A  +A DL  
Sbjct: 423 NDNYGHLVGDQCLKLVAERLRRRLRGEDTIARSGGEEFVAVLGELKSRQDAYRVAEDLLY 482

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           +    +  +  G  + +  S G+A         S +   AD A+Y +KKSG NR    SD
Sbjct: 483 VF--HEPFLVEGYRLELPASIGVALYPDDGTDASDLWRNADIAMYRSKKSGGNRFTFVSD 540

Query: 261 IENNTC 266
             ++  
Sbjct: 541 EISSAA 546


>gi|149377541|ref|ZP_01895281.1| diguanylate cyclase [Marinobacter algicola DG893]
 gi|149358154|gb|EDM46636.1| diguanylate cyclase [Marinobacter algicola DG893]
          Length = 365

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 73/261 (27%), Positives = 125/261 (47%), Gaps = 19/261 (7%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI---- 64
           L I L  E ++ +F     MI    +  +       ++  F+    +T ++ LE++    
Sbjct: 95  LLIMLVPEASVSAFV-WVLMIPVLAYLLLGKREGFLLSAPFMVAGCITFYFHLEFVADAG 153

Query: 65  -LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL- 122
            +++ L++V+ +I   L+LG+I          +  ++  L++ D L+GL N + F S+L 
Sbjct: 154 GVIDLLNMVLCAI---LMLGFIHLY-ETRREEAEQKLFTLAQTDALTGLANRANFQSTLD 209

Query: 123 ------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                        ++V  DID+FK +ND  GH  GD V+  +  QL         VGRLG
Sbjct: 210 RTLAECARSGSGFALVIMDIDHFKVVNDTMGHDAGDHVLQNIGKQLTERLRITDAVGRLG 269

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPIST 235
           GEEF         +++  L ++LR+ I +S++       I +T S GIA    H     T
Sbjct: 270 GEEFGLILRDVKLEDSFQLMDELRQRIADSELPYGD-ALIRVTASFGIAHYPDHAIEAET 328

Query: 236 IIYRADQALYVAKKSGRNRVV 256
           +   AD+ L+ +K++GRNRV 
Sbjct: 329 LFRIADRCLFSSKRAGRNRVA 349


>gi|15596378|ref|NP_249872.1| sensor protein [Pseudomonas aeruginosa PAO1]
 gi|9947106|gb|AAG04570.1|AE004548_4 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 1120

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 14/189 (7%)

Query: 83  GYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           G I G++L      +       +S  +  D L+GL N + F   L            + +
Sbjct: 659 GEIIGTVLVFQNVTKARAMQRELSYHASHDALTGLFNRTKFEEELQRALANAQERATQHA 718

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           + F D+D FK +ND+ GH  GD ++  LS  L         + RLGG+EF          
Sbjct: 719 LCFIDLDRFKVVNDSAGHAAGDMLLRELSRILADRTRASDTLARLGGDEFGLLLFDCDLA 778

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKK 249
           EA  +A+ L + I + +     G    +  S GI A        S ++ +AD A Y AK 
Sbjct: 779 EAEQVASKLIEQICSVRFPW-EGRLYDVGASIGITALTATSRSTSELMSQADVACYAAKH 837

Query: 250 SGRNRVVCF 258
           +GRNRV  +
Sbjct: 838 AGRNRVSVY 846


>gi|327193425|gb|EGE60324.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 735

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 24/218 (11%)

Query: 70  SLVIISITISLL-LGYISGSILK----------ELFISYNRISQLSRIDCLSGLLNHSAF 118
           SL+ + +   ++ +G+++ S  K          +L  +  R+  LS  D L+GL N   F
Sbjct: 260 SLLALCVVAPIVWVGFLTKSRQKTIEKLRLHKNKLVRARQRLEHLSLHDALTGLPNRR-F 318

Query: 119 ISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           +  + S        ++L ++  D+D FK+IND  GH  GD V+   + +L  + G     
Sbjct: 319 VDQMISQPPRPDPQDRLILIHIDLDRFKEINDTKGHAGGDMVLQTTASRLADLTGPNDVA 378

Query: 173 GRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAE---RC 228
            R+GG+EF  A+  +  + +AA LA  +   ++ +      G    +  S G+A      
Sbjct: 379 ARIGGDEFVFASWSTDPEPKAAELARQIVDALQRTIF--IDGAGYVVGASVGVAWETKSA 436

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
               +  ++  AD ALY AKK+GR R   F++   +  
Sbjct: 437 RDRDLGQLLLNADLALYEAKKAGRGRAAVFTEELRSAA 474


>gi|260682237|ref|YP_003213522.1| putative chemosensory protein [Clostridium difficile CD196]
 gi|260685836|ref|YP_003216969.1| putative chemosensory protein [Clostridium difficile R20291]
 gi|260208400|emb|CBA60929.1| putative chemosensory protein [Clostridium difficile CD196]
 gi|260211852|emb|CBE02269.1| putative chemosensory protein [Clostridium difficile R20291]
          Length = 326

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 8/176 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQ 141
           I  EL  S  ++++L   D L+GL N    I+ L             +S++  DID FK 
Sbjct: 143 INNELESSLEKLNRLVVRDYLTGLYNRRHIINQLMEQRRINKYSETSISLILGDIDDFKV 202

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH  GD V+  +S  +         V R GGEEF      +  + A IL+  +RK
Sbjct: 203 INDTYGHEAGDFVLTVISSIIKKNCRQIDTVSRWGGEEFLIMLTNTPIEGAKILSERIRK 262

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I+    N      I  TI+ G+ E      +   I  AD+A+Y  K  G++  V 
Sbjct: 263 EIKEFDFNYKE-HKIKCTITLGVVEVNSNISLEENISLADKAMYEGKNLGKDCSVV 317


>gi|238917332|ref|YP_002930849.1| two-component system, PleD related family, response regulator
           [Eubacterium eligens ATCC 27750]
 gi|238872692|gb|ACR72402.1| two-component system, PleD related family, response regulator
           [Eubacterium eligens ATCC 27750]
          Length = 385

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 73/265 (27%), Positives = 115/265 (43%), Gaps = 30/265 (11%)

Query: 29  IYFSIFFSIFIATVIFIANIFLF----YIGLTPFYGLEYILVENLSLV---------IIS 75
           I  S     ++A  ++I  I  F     IG+  F  +  IL+  +S +         II 
Sbjct: 113 IAQSGSILFYLAACVYIVFIPAFTKAECIGILMFQTVVVILLSIVSSMDLRMFFDVCIIQ 172

Query: 76  ITISLLLGYISGSILKELFISYN--RISQLSRIDCLSGLLNHSAFISSLGS-----YNEK 128
               LL+ Y     ++ + ++    R    S  D L+GL N     + + +        +
Sbjct: 173 AATILLVAYQHNLAVQRVRVNMQLKRKKDYSEHDALTGLYNRRGLDARIKAIWPFCERNR 232

Query: 129 LSIVFF--DIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAAL 185
           LS+     D+DYFK+ ND FGHP GD+ +  ++  L      +   V R GGEEF     
Sbjct: 233 LSVAMIAVDVDYFKKYNDTFGHPKGDECLKTVAGILKNSAQRSTDVVTRTGGEEFIVFVQ 292

Query: 186 GSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIA--ERCHKEPISTIIYRADQ 242
              E+    LA  +R  ++   I  +  G S ++T+S GIA     +      +   AD 
Sbjct: 293 DMDEESLISLAMKIRNNLDQKHIEHAYYGVSKYVTVSMGIAGFVPAYNNDFKKLYQEADN 352

Query: 243 ALYVAKKSGRNRVV----CFSDIEN 263
           ALY+AKK+GRN +V     +  I N
Sbjct: 353 ALYLAKKNGRNCIVYDGKVYGSIMN 377


>gi|126698116|ref|YP_001087013.1| putative chemosensory protein [Clostridium difficile 630]
 gi|255099643|ref|ZP_05328620.1| putative chemosensory protein [Clostridium difficile QCD-63q42]
 gi|255305527|ref|ZP_05349699.1| putative chemosensory protein [Clostridium difficile ATCC 43255]
 gi|115249553|emb|CAJ67370.1| putative CheY-like chemosensory protein [Clostridium difficile]
          Length = 319

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 8/176 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQ 141
           I  EL  S  ++++L   D L+GL N    I+ L             +S++  DID FK 
Sbjct: 136 INNELESSLEKLNRLVVRDYLTGLYNRRHIINQLMEQRRINKYSETSISLILGDIDDFKV 195

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH  GD V+  +S  +         V R GGEEF      +  + A IL+  +RK
Sbjct: 196 INDTYGHEAGDFVLTVISSIIKKNCRQIDTVSRWGGEEFLIMLTNTPIEGAKILSERIRK 255

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            I+    N      I  TI+ G+ E      +   I  AD+A+Y  K  G++  V 
Sbjct: 256 EIKEFDFNYKE-HKIKCTITLGVVEVNSNISLEENISLADKAMYEGKNLGKDCSVV 310


>gi|319783812|ref|YP_004143288.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169700|gb|ADV13238.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 355

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 63/178 (35%), Positives = 89/178 (50%), Gaps = 8/178 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKL---SIVFFDIDYFKQIN 143
           L+ +        +L+  D L+ + N  AF   +      N  +   ++V  DID FK IN
Sbjct: 162 LETVKSKLEEYKRLADTDPLTHIWNRRAFDKEITRIYNSNRGILFNALVLADIDRFKDIN 221

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D FGHPVGDK+I  ++D         MFV R GGEEFA    G+SE     +A  +R +I
Sbjct: 222 DRFGHPVGDKIIQSIADIFQTSIRGDMFVARTGGEEFALIVEGASEDATYDVAERIRALI 281

Query: 204 ENSQINISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           E +    S   + +  +T+S GI      E    +  +AD+ALY +K SGRNRV   S
Sbjct: 282 EQTPFTSSQTGTNYGTVTVSMGICMASEAEGPEDLYTKADRALYRSKVSGRNRVTRHS 339


>gi|307721000|ref|YP_003892140.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
 gi|306979093|gb|ADN09128.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
          Length = 614

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/289 (28%), Positives = 125/289 (43%), Gaps = 49/289 (16%)

Query: 12  WLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG----LEYILVE 67
           WL H +       +   +YFS++  IF+   I   NI L YI +    G       IL  
Sbjct: 75  WLLHVR-------YFMFVYFSLWTVIFL-YYISKDNIHLHYIAIATQLGSAVVASTILAS 126

Query: 68  NLSLVIIS--------ITISLLLGYISGSILK---------ELFISYNRISQL------S 104
              LVII+        I   L +G I   +L           L+ + N    L      +
Sbjct: 127 QKRLVIITVASLMLPIILYFLAIGQIYSYLLAFFTVVLTIVLLYAAKNTYEYLLKSRFQA 186

Query: 105 RIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
             D L+GL N   FI  L S      ++   ++  D+DYFK IND  GH VGDK++  +S
Sbjct: 187 YHDYLTGLGNRRYFIEHLASSVKENKDKYTYLLLIDLDYFKTINDTLGHDVGDKLLIEVS 246

Query: 160 DQLVVVFG-TPMFVGRLGGEEFAAAALGSS-----EQEAAILANDLRKIIENSQINISSG 213
            +L  +       V RLGG+EF   +           EA   +N + K I+ +       
Sbjct: 247 QRLTKLSSVHHNIVARLGGDEFCILSDAFDTKELCLAEAEEFSNKILKTIKEAYF--IED 304

Query: 214 PSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            S+HI+ S G++   + +   +  +  AD A+Y AK +GR+ V+ F+D 
Sbjct: 305 SSLHISASIGVSIINNPQLNANDFLKEADIAMYEAKHNGRDDVIIFNDE 353


>gi|262401643|ref|ZP_06078209.1| C-di-GMP phosphodiesterase A-related protein [Vibrio sp. RC586]
 gi|262352060|gb|EEZ01190.1| C-di-GMP phosphodiesterase A-related protein [Vibrio sp. RC586]
          Length = 685

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 89/190 (46%), Gaps = 10/190 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           L     S+ K   ++ ++++QL+  D L+GL N S  +  +          +   ++ + 
Sbjct: 220 LASTFQSVWKGKELAESKLNQLAYYDSLTGLANRSLLLQKISDAITKAQHSHTTGALFYL 279

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND+ GH +GD++I  ++ ++           R+GG+EFA      +  +A  
Sbjct: 280 DLDRFKTINDSLGHTIGDQLIKAVAMRMEAWANHDYLSARIGGDEFAVLIPSLAPHKAEE 339

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRN 253
           +A  L  +I N          ++ T+S GI+           ++ +AD ALY AK SGRN
Sbjct: 340 VAKQLLTLISN--PYTVDDHQLYCTVSIGISIFPSVGISNIDVLRQADTALYRAKASGRN 397

Query: 254 RVVCFSDIEN 263
           + + +     
Sbjct: 398 KFMFYEPEMQ 407


>gi|256376388|ref|YP_003100048.1| diguanylate cyclase [Actinosynnema mirum DSM 43827]
 gi|255920691|gb|ACU36202.1| diguanylate cyclase [Actinosynnema mirum DSM 43827]
          Length = 430

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 104/231 (45%), Gaps = 19/231 (8%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY--------ISGSILKE 92
           T +    I L     T  +G     +   + + ++  ++L + +        +  ++   
Sbjct: 184 TALVAGVIVLTTGARTNLFGGPLDNLLEAAQLSLAFFVALAVAWWPGFALPMVVAAVALH 243

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
             +  +++   +R D  +GLLN  A+       ++      + L ++  D+D+FK IND 
Sbjct: 244 RTVLIHQLELAARTDAKTGLLNAEAWHLQARVELNRTRQRGDALGLLMIDVDHFKGINDT 303

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GD+V+  ++D +         VGR GGEEF     G+   E+  +A   R  +  
Sbjct: 304 HGHQTGDEVLRSIADVIRESVRRGDSVGRFGGEEFVVLLPGAGRDESMAIAERARCRV-- 361

Query: 206 SQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNR 254
             +   +GP   +T+S G+A      ++ +  ++  AD ALY AK+ GR++
Sbjct: 362 GLLGTGAGPVRGLTVSVGVAVWPDVPEDTVEGLLAAADGALYQAKRLGRDQ 412


>gi|213052592|ref|ZP_03345470.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
          Length = 543

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 99  AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 158

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF      +S    E  A+ + 
Sbjct: 159 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRIL 218

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 219 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSESLIRTADTAMYNAKEGGRGQFC 273

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 274 VFSPEMNQ 281


>gi|152989344|ref|YP_001351073.1| hypothetical protein PSPA7_5754 [Pseudomonas aeruginosa PA7]
 gi|150964502|gb|ABR86527.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 899

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 99/212 (46%), Gaps = 16/212 (7%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNH 115
           P++G        LSL  +   +  L  YI     + +  ++   I +L+  D L+GL N 
Sbjct: 430 PYWG-------QLSLSKVYDDLGELTHYIGIYEDITQNKLAQQHIEKLAYRDNLTGLANR 482

Query: 116 SAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
             FI +L        +  LS++  DID FK+IND+ GH  GDK++  L+ +L    G   
Sbjct: 483 HYFIGALEERLESSGDRPLSLLLVDIDNFKRINDSLGHQTGDKLLVSLARRLRSCLGDGA 542

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-H 229
            + R    EFA     ++ ++   +A  +  +++           I+IT S G+A    H
Sbjct: 543 TLARFASNEFAVLLDDTAVEKGESIAAQVLHMLDKPLF--VDNQLINITGSIGLASAPQH 600

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                T++  A  AL+ AK +G+++V  F++ 
Sbjct: 601 GCDPQTLMKYAGLALHKAKANGKHQVQVFTEA 632


>gi|303245955|ref|ZP_07332237.1| serine/threonine protein kinase [Desulfovibrio fructosovorans JJ]
 gi|302492738|gb|EFL52606.1| serine/threonine protein kinase [Desulfovibrio fructosovorans JJ]
          Length = 1719

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/172 (34%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 91   KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
            KEL      + +LS  D L+G+ N  +    L    E        L+I+  D+D FK +N
Sbjct: 1549 KELNRKNLALQRLSTTDQLTGVYNRRSIEDRLRHEIEHCRDNESSLAIILLDVDCFKDVN 1608

Query: 144  DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            D FGH VGD V+  ++  +     +  F GR GGEEF               A  LRK++
Sbjct: 1609 DTFGHNVGDTVLVDIAVTIGRNVRSTDFFGRWGGEEFMVVVSEFVSN-VLPFAERLRKVL 1667

Query: 204  ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            E  +   +      +T S G+A     E  S  + RADQALY AK++GRNRV
Sbjct: 1668 EKKRHPTAG----KVTASLGVALYLPGETPSQFVSRADQALYRAKENGRNRV 1715


>gi|269960267|ref|ZP_06174642.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835074|gb|EEZ89158.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 581

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 18/192 (9%)

Query: 84  YISGSILKELFISYNRISQ-------LSRIDCLSGLLNHSAFISSLG-------SYNEKL 129
            I    + E +++  ++ +       LS  D L+ + N   F   L             L
Sbjct: 385 LIMARDISERYLAEQKLEEANLELEKLSFSDSLTKVANRRRFDEQLHTLWYHHIREKLPL 444

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSS 188
           +I+  DID+FK  ND +GH  GD+ +  ++     V   +   V R GGEEFA     ++
Sbjct: 445 TIMLCDIDFFKDYNDCYGHQQGDEALVKVAAVFQQVVSRSSDCVARYGGEEFAFILPNTT 504

Query: 189 EQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAER--CHKEPISTIIYRADQALY 245
            + A  +A  + + I    I    S  S  +T+S G       H +     +  AD ALY
Sbjct: 505 TEGAHKVAQRIHEQIHELAIEHGCSSVSNRLTVSIGFVSYVPHHGDEPEMGVAMADSALY 564

Query: 246 VAKKSGRNRVVC 257
            AK  GR+R   
Sbjct: 565 QAKADGRDRTHL 576


>gi|87121409|ref|ZP_01077298.1| diguanylate cyclase (GGDEF domain) [Marinomonas sp. MED121]
 gi|86163252|gb|EAQ64528.1| diguanylate cyclase (GGDEF domain) [Marinomonas sp. MED121]
          Length = 319

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 78/191 (40%), Gaps = 13/191 (6%)

Query: 85  ISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFD 135
           ++  +   L ++  R  +  L+  D L+ + N       L           E + I   D
Sbjct: 116 VNARVSTHLELAKQRKLLEDLAHYDSLTMIPNRRHLEEHLEKECHKASLSGEPICIALID 175

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           +D FK  NDN+GH  GD V+  ++  L   +     FV R GGEEF           A  
Sbjct: 176 VDSFKSYNDNYGHRAGDFVLKKVARSLKLSLTRDEDFVCRYGGEEFCLILPNCDLNRAKA 235

Query: 195 LANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSG 251
                R  ++   I  + SG    IT+S G       +   I  I+ +AD  LY AK  G
Sbjct: 236 TLEKCRASVQELTIEHNFSGILPVITVSIGGYLLVPDDTADIENILIKADSYLYQAKHLG 295

Query: 252 RNRVVCFSDIE 262
           RN+V    ++E
Sbjct: 296 RNQVKLEHELE 306


>gi|258626404|ref|ZP_05721251.1| GGDEF family protein [Vibrio mimicus VM603]
 gi|258581456|gb|EEW06358.1| GGDEF family protein [Vibrio mimicus VM603]
          Length = 440

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 18/222 (8%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102
           +F+A + ++         LE  +  N   VI++      L  ++ S    L     +  +
Sbjct: 219 LFLAMLIMWAAAGAWLSALE--IRRNRREVILARMRQAHLQRLNHS----LHEQNMKYVE 272

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++  D L+G +N       L            + S++F DIDYFKQ+ND +GH +GD ++
Sbjct: 273 MAHRDALTGAINRHGIRDWLQEQARLVRWQLNQFSVLFIDIDYFKQVNDVYGHGIGDDLL 332

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
                 +         + R GGEEF      +   +A  LA+ LR  +EN    +  G  
Sbjct: 333 REFVLVISSEIRESDRLVRWGGEEFVVFCAQTGIDQAVDLADRLRIRVENHSW-LHGGE- 390

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +T S GIA+    E ++  + RAD+ALY AK+ GRNR+  
Sbjct: 391 --LTCSIGIAQM-ENERVTETVSRADEALYRAKRLGRNRIEV 429


>gi|118593438|ref|ZP_01550818.1| putative kinase/esterase [Stappia aggregata IAM 12614]
 gi|118433917|gb|EAV40575.1| putative kinase/esterase [Stappia aggregata IAM 12614]
          Length = 759

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 60/217 (27%), Positives = 96/217 (44%), Gaps = 20/217 (9%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           + PF  L   ++   + V+I++TI       +  + K L  S  R    SR D LSGL N
Sbjct: 278 INPFLALAAFMI---AAVVIAVTI------FTHQMTKRLAHSEARAVHASRHDALSGLPN 328

Query: 115 HSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
            + F       +    +     ++V+ D+D+FK IND  GH  GDKVI  ++ +L  V  
Sbjct: 329 RARFHTLLTETLEESAAEGTNTAVVYIDLDHFKDINDTLGHSAGDKVITAVAQRLHRVIP 388

Query: 168 TPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
               V R+ G+EFA       +      + + ++  I   +  +     +H ++S G A 
Sbjct: 389 DTGIVARISGDEFAMVIRNCEDDVWLEYILDQVQDEI--GRPIMIGRRELHASLSMGAAV 446

Query: 227 RC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
                     ++ +AD ALY AK +GRNR   F    
Sbjct: 447 APRDGNDPDELLRKADIALYDAKANGRNRRSFFEPNM 483


>gi|107104117|ref|ZP_01368035.1| hypothetical protein PaerPA_01005190 [Pseudomonas aeruginosa PACS2]
          Length = 899

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 99/212 (46%), Gaps = 16/212 (7%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNH 115
           P++G        LSL  +   +  L  YI     + +  ++   I +L+  D L+GL N 
Sbjct: 430 PYWG-------QLSLSKVYDDLGELTHYIGIYEDITQNKLAQQHIEKLAYRDNLTGLANR 482

Query: 116 SAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
             FI +L        +  LS++  DID FK+IND+ GH  GDK++  L+ +L    G   
Sbjct: 483 HYFIGALEERLESSGDRPLSLLLVDIDNFKRINDSLGHQTGDKLLVSLARRLRSCLGDGA 542

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-H 229
            + R    EFA     ++ ++   +A  +  +++           I+IT S G+A    H
Sbjct: 543 TLARFASNEFAVLLDDTAVEKGESIAAQVLHMLDKPLF--VDNQLINITGSIGLASAPQH 600

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                T++  A  AL+ AK +G+++V  F++ 
Sbjct: 601 GCDPQTLMKYAGLALHKAKANGKHQVQVFTEA 632


>gi|88858639|ref|ZP_01133280.1| putative GGDEF domain protein [Pseudoalteromonas tunicata D2]
 gi|88818865|gb|EAR28679.1| putative GGDEF domain protein [Pseudoalteromonas tunicata D2]
          Length = 858

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 12/182 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK-LSIVFFDIDYFKQ 141
           ++E      ++   +  D L+GL N S F+  L         + +   +++F D+D FK 
Sbjct: 424 IEERKKIELQLYHDAHHDALTGLANRSLFLMQLDKTLQHHLRHPQPGFAVLFIDLDNFKA 483

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           INDN GH VGD+ +  ++    +       + RL G+EF          QEA  +AN + 
Sbjct: 484 INDNLGHQVGDQFLIDVARSFGLCIREHDLLARLAGDEFVILLTHLHHPQEAIDVANRIV 543

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I++  +    +G  I    S GI    +       II  AD A+Y AKK+GR +V  F 
Sbjct: 544 DIMK--EPFCRNGFCIQSGASIGITHSHNNYNDTDAIIRDADTAMYQAKKNGRGQVEFFH 601

Query: 260 DI 261
            +
Sbjct: 602 PL 603


>gi|296391862|ref|ZP_06881337.1| putative sensory box protein [Pseudomonas aeruginosa PAb1]
          Length = 899

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 99/212 (46%), Gaps = 16/212 (7%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNH 115
           P++G        LSL  +   +  L  YI     + +  ++   I +L+  D L+GL N 
Sbjct: 430 PYWG-------QLSLSKVYDDLGELTHYIGIYEDITQNKLAQQHIEKLAYRDNLTGLANR 482

Query: 116 SAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
             FI +L        +  LS++  DID FK+IND+ GH  GDK++  L+ +L    G   
Sbjct: 483 HYFIGALEERLESSGDRPLSLLLVDIDNFKRINDSLGHQTGDKLLVSLARRLRSCLGDGA 542

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-H 229
            + R    EFA     ++ ++   +A  +  +++           I+IT S G+A    H
Sbjct: 543 TLARFASNEFAVLLDDTAVEKGESIAAQVLHMLDKPLF--VDNQLINITGSIGLASAPQH 600

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                T++  A  AL+ AK +G+++V  F++ 
Sbjct: 601 GCDPQTLMKYAGLALHKAKANGKHQVQVFTEA 632


>gi|283852651|ref|ZP_06369917.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio sp. FW1012B]
 gi|283571942|gb|EFC19936.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio sp. FW1012B]
          Length = 827

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 12/175 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYF 139
             + E      +I+  +  D L+GL N S F   L           + + +++  D++ F
Sbjct: 381 QDISERKAFEEQITHQAFHDALTGLPNRSLFADRLERALTRARRRGDSQYAVLMIDLNKF 440

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K +ND  GH  GD+++  ++ +L     +   V RLGG+EFA       +++E   +   
Sbjct: 441 KGVNDTLGHQAGDQLLVEVARRLSGCVRSMDTVARLGGDEFAVILEEFKTKKEVMTVVER 500

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252
           +   +   +  +  G ++    S GI            ++  AD A+Y AK+ GR
Sbjct: 501 I--GVGLGKPFVLCGKTVTPEASIGIVLHTRDYAAADDLLRDADIAMYRAKEQGR 553


>gi|300024581|ref|YP_003757192.1| diguanylate cyclase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526402|gb|ADJ24871.1| diguanylate cyclase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 371

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 88/184 (47%), Gaps = 9/184 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           S + +++L  S +    L  +D ++ L N     ++L          NE L ++  D+D+
Sbjct: 188 SQTQIEKLRSSLSESQYLGMLDAVTQLKNRHWLEANLPREVKAASELNEPLCLIMADVDH 247

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND FGH VGD+++    + L           R GGEEF      +  + A  L   
Sbjct: 248 FKKINDTFGHTVGDEILRRFGELLSKNIKGRDTAVRYGGEEFVVLLPQTQIEGADNLGEQ 307

Query: 199 LRKIIENSQ-INISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +R  ++  + ++  +G  I  +T S GIAE    +   +++ RAD  LY AK  GRN V 
Sbjct: 308 IRDELQRKKWMHHRTGKPIGTVTASFGIAELRPGDGPESLLERADAKLYEAKADGRNCVK 367

Query: 257 CFSD 260
             SD
Sbjct: 368 SDSD 371


>gi|78355579|ref|YP_387028.1| response regulator receiver /GGDEF/PAS/PAC domain-containing
           protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217984|gb|ABB37333.1| response regulator receiver (CheY-like) modulated diguanylate
           cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 715

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 9/180 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQIN 143
            + EL     +I   +  D L+GL N      ++           L+++  D+D FK +N
Sbjct: 278 DITELKKKEAQIYHQAYHDELTGLANRVRLKDAIADRIRLGGDGGLAVLMLDLDNFKNVN 337

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH VGDK++   S +L  V G    + R GG+EFA    G  +  A  LA  +    
Sbjct: 338 DSLGHGVGDKLLLEASRRLRDVVGPQPLLARTGGDEFALLLDGC-KDVANRLAAKVLDAF 396

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             +   +     ++ITIS G+           +++  AD A+Y AK+ GR+R + F    
Sbjct: 397 --TVPFVIDEHELYITISIGLTCWPEDGADADSLVKNADVAMYKAKEQGRSRCLHFDAEM 454


>gi|296272209|ref|YP_003654840.1| PAS/PAC sensor-containg diguanylate cyclase [Arcobacter
           nitrofigilis DSM 7299]
 gi|296096384|gb|ADG92334.1| diguanylate cyclase with PAS/PAC sensor [Arcobacter nitrofigilis
           DSM 7299]
          Length = 703

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/179 (32%), Positives = 88/179 (49%), Gaps = 11/179 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           +++      R+  LS  D L+   N   F       I+     N  L+ +  DID+FK  
Sbjct: 523 IRQDITDKKRVEYLSITDELTQTYNRRYFNTKIEEEINRAKRNNYYLAFIMLDIDFFKLY 582

Query: 143 NDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           NDN+GH  GD+ +  +S  L         F  RLGGEEF       +E+++ + A  +RK
Sbjct: 583 NDNYGHHKGDETLIKVSQILIKHTARASDFAFRLGGEEFGILFSYKNEEDSLMYAESIRK 642

Query: 202 IIENSQINISSGP-SIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257
            IE  +I   +   S ++T S G+  +  K  E I T+   AD+ALY AK+SG+NRV  
Sbjct: 643 EIEALKIEHKANEASPYLTTSLGLVVKKGKELESIDTVYKLADEALYKAKESGKNRVCV 701


>gi|320334479|ref|YP_004171190.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
 gi|319755768|gb|ADV67525.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
          Length = 576

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 8/176 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           ++L++L      ++  +R D L+GL N   F+                +++   DIDYFK
Sbjct: 401 ALLQQLRWQAEELAHQARSDALTGLPNRRCFLERFEQERARADRTGAPIAVALIDIDYFK 460

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND   H +GD V+  +++ L           R GGEEFA     +    A +    LR
Sbjct: 461 RVNDEHSHAIGDAVLCRIAELLTQGVRASDTAARYGGEEFALLMPDTDTYGARLTCERLR 520

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I     +    P++ +T+S G+      E    ++  AD  LY AK  GRNRV 
Sbjct: 521 VAIAAHDWSTVH-PNLQVTLSIGLHVAHGPEGAERMLASADARLYRAKALGRNRVQ 575


>gi|313110052|ref|ZP_07795955.1| putative sensory box protein [Pseudomonas aeruginosa 39016]
 gi|310882457|gb|EFQ41051.1| putative sensory box protein [Pseudomonas aeruginosa 39016]
          Length = 899

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 99/212 (46%), Gaps = 16/212 (7%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNH 115
           P++G        LSL  +   +  L  YI     + +  ++   I +L+  D L+GL N 
Sbjct: 430 PYWG-------QLSLSKVYDDLGELTHYIGIYEDITQNKLAQQHIEKLAYRDNLTGLANR 482

Query: 116 SAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
             FI +L        +  LS++  DID FK+IND+ GH  GDK++  L+ +L    G   
Sbjct: 483 HYFIGALEERLESSGDRPLSLLLVDIDNFKRINDSLGHQTGDKLLVSLARRLRSCLGDGA 542

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-H 229
            + R    EFA     ++ ++   +A  +  +++           I+IT S G+A    H
Sbjct: 543 TLARFASNEFAVLLDDTAVEKGESIAAQVLHMLDKPLF--VDNQLINITGSIGLASAPQH 600

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                T++  A  AL+ AK +G+++V  F++ 
Sbjct: 601 GCDPQTLMKYAGLALHKAKANGKHQVQVFTEA 632


>gi|300694697|ref|YP_003750670.1| response regulator receiver, diguanylate cyclase (ggdef domain)
           [Ralstonia solanacearum PSI07]
 gi|299076734|emb|CBJ36074.1| Response regulator receiver, putative diguanylate cyclase (GGDEF
           domain) [Ralstonia solanacearum PSI07]
          Length = 358

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L+  D L+GL N       L             LS +  D+D FK  N
Sbjct: 171 QQLLEANLELRRLTNSDGLTGLSNRRYLDEYLSAEWRRSEREQMPLSFLMIDVDNFKLYN 230

Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+V+  ++  +            R GGEEFA    G      A LA  +R  
Sbjct: 231 DTYGHVAGDEVLKRIAVTVDGCLGRPGGLAARFGGEEFAVVLPGIGLDVLAQLAEKIRLA 290

Query: 203 IENSQINIS-SGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253
           IE  ++  + S    H+T+S G A         ++ ++  AD ALY AK +G+N
Sbjct: 291 IEALRVPHAQSSTGAHLTVSVGGAVMVPAAGAAMTGLVEAADLALYRAKHAGKN 344


>gi|289435261|ref|YP_003465133.1| GGDEF domain protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171505|emb|CBH28049.1| GGDEF domain protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 375

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 106/232 (45%), Gaps = 11/232 (4%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           FS FIA +I      L+Y       G      E +  + +S    LL+ Y    I K   
Sbjct: 140 FSKFIALLILSFPAQLYYFINNFDGGRILQGFEIVEYLFLSFATGLLVFYACNYIDKSNL 199

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFG 147
           +    +++ +  D L+ L N   F                 LS+   DID+FK+IND  G
Sbjct: 200 V-IQTLTETAMTDSLTNLPNMRFFTQQFAWIFNKSLKKKAPLSLFIIDIDHFKEINDFHG 258

Query: 148 HPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  G+ V+A  S  L    F       R+GGEEFA         +AA++A+ +R+ IE++
Sbjct: 259 HQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVDATQAALIADHIREEIEHA 318

Query: 207 QINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   +   S  +TIS G+A   C      ++   ADQALY AK+SGRN++  
Sbjct: 319 KFPYTP-TSGQVTISIGVATANCSFSTTESLFEAADQALYQAKQSGRNQISV 369


>gi|190892769|ref|YP_001979311.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190698048|gb|ACE92133.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 783

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 14/184 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           + + EL  S +R  + +  D L+GLLN   F       I++  +  ++L+ +F D+D FK
Sbjct: 332 TDVTELKASEDRNHRQAITDHLTGLLNRQGFEAVLDSKIAAADASGQELACLFVDLDRFK 391

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
            INDN GH  GDK +  L ++L           RLGG+EFA        E+ A  +   +
Sbjct: 392 WINDNMGHAAGDKALIELVERLKTHLAPSDEAARLGGDEFAILLPAKDAERRAKAMCEQI 451

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             I E         P +H++ S GI+    H    + ++ ++D A+Y  K+ G+N    F
Sbjct: 452 ASIFET-----PFAPDMHLSASIGISIYPHHATTAAELLQKSDMAMYAKKRDGKNGAQLF 506

Query: 259 SDIE 262
            ++ 
Sbjct: 507 DNVM 510


>gi|114778031|ref|ZP_01452931.1| sensory box/GGDEF domain protein [Mariprofundus ferrooxydans PV-1]
 gi|114551637|gb|EAU54190.1| sensory box/GGDEF domain protein [Mariprofundus ferrooxydans PV-1]
          Length = 309

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 11/179 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141
            + +   +     +++  D L+GL N  + ++ L    ++       L+++  D+D FK 
Sbjct: 131 DITDRKKAEKMYQEMALTDALTGLNNRLSMMNHLEHAFDRTLRSKNGLALLMLDLDNFKY 190

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           INDN+GHP GD  +  ++D+L  V      V RLGG+EFA      +   +   +A  + 
Sbjct: 191 INDNYGHPAGDLFLRTVADRLKHVVRKADVVSRLGGDEFAIILEDITDITQVTHVAEKVL 250

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 Q     G  + +  S GIA    H   + +++  +D ALY AK  G+     +
Sbjct: 251 SQFA--QPVEIDGHILSMGSSIGIAMIPTHANSVESLMKHSDIALYQAKAKGKGTYCVY 307


>gi|70733696|ref|YP_257336.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens
           Pf-5]
 gi|68347995|gb|AAY95601.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           fluorescens Pf-5]
          Length = 639

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 13/184 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           S +  +  S + ++ L+  D L+ L N   F             +    +++  D+D+FK
Sbjct: 196 SDISAIKDSEHELAHLAHHDPLTDLPNRLLFTDRAEQALASAQIHKRGCAMLMIDLDHFK 255

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            IND+ GH VGD+++  ++++L  +FG  + + RLGG+EFA  A    +  +AA LA  +
Sbjct: 256 MINDSLGHNVGDQLLKAVAERLGGMFGPGITLARLGGDEFAVLAESCPQLVQAAALAQRI 315

Query: 200 RKIIENSQINISSG-PSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
              I+  +     G   + I  S GI+         S ++  AD AL+ AK +GRN    
Sbjct: 316 ---IDGLKEPFQLGEQQVVINASIGISLFPSDALSASQLLRNADAALFKAKSAGRNGYAL 372

Query: 258 FSDI 261
           +++ 
Sbjct: 373 YTEE 376


>gi|84385122|ref|ZP_00988154.1| Predicted signal transduction protein [Vibrio splendidus 12B01]
 gi|84379719|gb|EAP96570.1| Predicted signal transduction protein [Vibrio splendidus 12B01]
          Length = 779

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 111/247 (44%), Gaps = 11/247 (4%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIIS-ITISLLLG 83
           ++F I    + S+  A   +I +  L+ +G T    ++ I V+   ++ ++ I +     
Sbjct: 258 YSFSISDDTYHSLVSAK--YIPDYKLWVVGRTDLSHVDGIFVKEFGILFVAFIFLQFGFY 315

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYF 139
           ++  SI K    + +++   +  D L+ L N      ++       +E  S++F DID F
Sbjct: 316 FLVKSIAKNEQRTRSQLIYQANHDPLTSLPNRLYMRRNISKWIEDESEPFSLLFIDIDNF 375

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND  GH  GDKV+  ++ +L+        + R   +EF      S+E E   LA  +
Sbjct: 376 KCVNDTHGHDFGDKVLKQIALRLMRFRSRVSLLVRESSDEFLFLTPLSNEVEIKRLAKRI 435

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +++  SQ          +  S G+A    H + + +++  AD ++Y AK+  +N    F
Sbjct: 436 IEVL--SQPYEVESAQFLLGCSIGVARFPEHGKDLDSLLRSADISMYKAKQQ-QNSYSIF 492

Query: 259 SDIENNT 265
           +    + 
Sbjct: 493 TTEMQDA 499


>gi|308186974|ref|YP_003931105.1| Cellulose synthesis regulatory protein [Pantoea vagans C9-1]
 gi|308057484|gb|ADO09656.1| Cellulose synthesis regulatory protein [Pantoea vagans C9-1]
          Length = 528

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 22/215 (10%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNR---------ISQLSRIDCLSGLLN 114
           +++  + LV+IS     +L  +  ++  +L ++  R         +  L+ ID L+GL N
Sbjct: 311 VILNVVLLVMISGMGMFVLRQVKKNVRNQLELTQIRDELTTINHTLQSLALIDGLTGLAN 370

Query: 115 HSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
              F + L           E ++++ FDID+FK+ ND +GH  GD  +  +S  L  +  
Sbjct: 371 RRQFDAMLDQVLKRSQKSGEPVALIMFDIDFFKRYNDTYGHVAGDTCLQRVSTILKEITQ 430

Query: 168 TPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG--PSIHITISAGI 224
                V R GGEEFA       E     +A      + ++ I   +   P   +T+SAG 
Sbjct: 431 RQDAVVARYGGEEFAIILPSGGESMGKKVAERAVNAVMSAGIPHETSGIPEGIVTLSAGY 490

Query: 225 AERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256
           +             +  +AD+ALY AK +GRNRV 
Sbjct: 491 SSLISNGQPDEAKRLKEQADKALYEAKHNGRNRVH 525


>gi|229010055|ref|ZP_04167269.1| Sensory box/GGDEF [Bacillus mycoides DSM 2048]
 gi|228751188|gb|EEM01000.1| Sensory box/GGDEF [Bacillus mycoides DSM 2048]
          Length = 569

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++     +     +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNKMIAEKIEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       +  E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKTHTNDEMRQLATSVLSCFQA-- 252

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 253 PFMLEGHEVYISASLGLCSYPQDGKDVETLLKNSDLAMYSAKEQGRNAACFFTDE 307


>gi|218529510|ref|YP_002420326.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium chloromethanicum CM4]
 gi|218521813|gb|ACK82398.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium chloromethanicum CM4]
          Length = 811

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 11/187 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
           GS + +   +   I+ L+  D L+GL N + F    G           ++ +++ D+D F
Sbjct: 359 GSDVTQRREADAHIAYLATRDPLTGLSNRAVFHDVAGEACTASMRGGPRVHLLYLDLDGF 418

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K++ND  GH  GD ++  ++D+L         V RLGG+EFA         EA ILA  +
Sbjct: 419 KKVNDTAGHCAGDDLLRQVADRLCASVDANAQVFRLGGDEFAILHRSRESAEAEILAEAV 478

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
             I    +  +  G    I +S GIA        +  ++ +AD ALY AK++GR R  CF
Sbjct: 479 --IASLHRPYLIEGMQAEIGVSIGIARAPQDATELQDLMRKADLALYTAKEAGRGRWHCF 536

Query: 259 S-DIENN 264
             D+E  
Sbjct: 537 EADLERR 543


>gi|94314500|ref|YP_587709.1| diguanylate cyclase (GGDEF) domain-containing protein [Cupriavidus
           metallidurans CH34]
 gi|93358352|gb|ABF12440.1| conserved hypothetical protein [Cupriavidus metallidurans CH34]
          Length = 548

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 13/185 (7%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFF 134
           L    G   +EL  +   +     +D L+G+ N   F                ++ ++  
Sbjct: 357 LAMQLGQTAQELSRAQADLD----VDALTGIPNRRYFQRESHAAVTRAYERGTEIGLLIL 412

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FKQ ND +GHP GD+ +  ++  L  V     F  RLGGEEFA     S+ +E   
Sbjct: 413 DVDLFKQFNDLYGHPRGDECLRQVATALTCVLDGTQFCARLGGEEFAVVLPDSTSEETRT 472

Query: 195 LANDLRKIIENSQINISSGP-SIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGR 252
           +A  +   +    I     P    +TIS G +        +  +++RAD A+Y AK++GR
Sbjct: 473 IARRMVAAVRELGIPHHGTPVQPFVTISVGAVCAVPDAPRLEPLLHRADSAMYRAKRAGR 532

Query: 253 NRVVC 257
           NR V 
Sbjct: 533 NRYVV 537


>gi|84515194|ref|ZP_01002557.1| hypothetical protein SKA53_13258 [Loktanella vestfoldensis SKA53]
 gi|84511353|gb|EAQ07807.1| hypothetical protein SKA53_13258 [Loktanella vestfoldensis SKA53]
          Length = 597

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 8/172 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG----SYNEKLSIVFFDIDYFKQINDNF 146
           +EL  +   + Q +  D L+ L N  AF  +L     + + +++++  D+D FK +ND  
Sbjct: 144 RELDEARQALEQAAYHDPLTELPNRRAFERALEHCLGAADGRVALLHLDLDRFKWVNDTL 203

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILANDLRKIIEN 205
           GH  GD V+   + ++    G      R+GG+EF      G S   A      + K +  
Sbjct: 204 GHQSGDAVLVTAAQRISQAVGNRGQTYRVGGDEFMVLLTQGISANLAHQTGTAIVKAL-T 262

Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I+++    + I IS GIA     ++  +T+I  AD ALY AK++GRN+V 
Sbjct: 263 RPIDLAQ-RQVTIGISIGIATGVAGQDTAATVIAHADVALYEAKRNGRNQVC 313


>gi|303248369|ref|ZP_07334630.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio fructosovorans JJ]
 gi|302490277|gb|EFL50191.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio fructosovorans JJ]
          Length = 820

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 12/175 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYF 139
             + E      +I+  +  D L+GL N S F   L           + + +++  D++ F
Sbjct: 376 QDISERKAFEEQITHQAFHDALTGLPNRSLFADRLERALTRTRRRDDYQYAVLMIDLNKF 435

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K IND  GH  GD ++  ++ +L     +   V RLGG+EFA       S++E   + + 
Sbjct: 436 KGINDTMGHAAGDLLLREVARRLAGCVRSMDTVARLGGDEFAVILEELKSKKEVMAVVDR 495

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGR 252
           +   +E  Q     G ++    S GI            ++  AD A+Y AK+ GR
Sbjct: 496 IGVTVE--QPFCLCGTTVSPGASIGIVLHTRDYAASEDVLRDADIAMYRAKEQGR 548


>gi|258620328|ref|ZP_05715366.1| Hypothetical signaling protein [Vibrio mimicus VM573]
 gi|258624699|ref|ZP_05719633.1| Hypothetical signaling protein [Vibrio mimicus VM603]
 gi|258582986|gb|EEW07801.1| Hypothetical signaling protein [Vibrio mimicus VM603]
 gi|258587207|gb|EEW11918.1| Hypothetical signaling protein [Vibrio mimicus VM573]
          Length = 685

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 10/190 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           L     S+ K   ++ ++++QL+  D L+GL N S  +  L        + +   ++ + 
Sbjct: 220 LASTFQSMWKGKELAESKLNQLAYYDSLTGLANRSLLLKKLSDAITTAQNSHTTGTLFYL 279

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND+ GH +GD++I  ++ ++           R+GG+EFA      S  +A  
Sbjct: 280 DLDRFKTINDSLGHTIGDQLIKAVALRMEAWTKNDYLSARIGGDEFAVLIPYLSPNKAEE 339

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRN 253
           +A  L  +I N          ++ T+S GI+           ++ +AD ALY AK  GRN
Sbjct: 340 VAKQLLTLISN--PYTIDDHQLYCTVSIGISIFPSVGISNIDVLRQADTALYRAKAGGRN 397

Query: 254 RVVCFSDIEN 263
           + + +     
Sbjct: 398 KFMFYEPEMQ 407


>gi|297568323|ref|YP_003689667.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924238|gb|ADH85048.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 603

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 89/182 (48%), Gaps = 10/182 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           L E  +   R+      D L+GL N S    +L        ++    ++++ D+D+FK +
Sbjct: 154 LAERRVMEARLKHRVGHDELTGLPNRSQLEGALELALIRAQNFQRSGALLYLDVDHFKLL 213

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GDK++  ++  L           R+GG+EFA     ++ ++   LA +LR++
Sbjct: 214 NDTEGHESGDKLLTGVAGVLRRRVLPRHLAVRIGGDEFAVLLENTTTEDVLKLAEELREL 273

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260
           +   +     G   ++  S G+A     E +    ++ RADQA +VAK+ GRNRV C+  
Sbjct: 274 LHEYRFEGCLGC-YNLGASIGVALMSPGESLQAGELLSRADQACHVAKRRGRNRVHCYDP 332

Query: 261 IE 262
            +
Sbjct: 333 ED 334


>gi|229033933|ref|ZP_04188887.1| Sensory box/GGDEF [Bacillus cereus AH1271]
 gi|228728359|gb|EEL79381.1| Sensory box/GGDEF [Bacillus cereus AH1271]
          Length = 909

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
           Y+    + E      +I+ L+  D L+ L N  AF   +              +++F D+
Sbjct: 459 YLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQYVEQAIARSEVSKRPFAVMFLDL 518

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAIL 195
           D FK IND  GH VGD ++  ++ +L  +    M + RL G+EF        ++ +   +
Sbjct: 519 DRFKVINDTLGHRVGDLLLIAVAKRLERLSTPNMKLARLAGDEFTILIENYKKRPDVKKI 578

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
           A+ +  ++  ++        +HI+ S GIA      E   +I+  AD A+Y AK  G+N 
Sbjct: 579 ADTI--VVAMNEPFEIENQHLHISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNG 636

Query: 255 VVCFS 259
              ++
Sbjct: 637 SSLYT 641


>gi|218663332|ref|ZP_03519262.1| putative kinase/esterase protein [Rhizobium etli IE4771]
          Length = 588

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 90/181 (49%), Gaps = 7/181 (3%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQIND 144
           + KEL  S       +  D L+GLLN  +F           + K++++  D+D+FK+IND
Sbjct: 144 LNKELERSRAEARFAADHDHLTGLLNRRSFDCALSELARQESVKVALLHIDVDHFKEIND 203

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH VGD V++ +S  L+          RLGG+EFA         +   + + +++ +E
Sbjct: 204 RFGHAVGDLVLSHVSKILLEAISAGDVAARLGGDEFAVVITEDECDKTIAVLDQIQRRLE 263

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +         ++ +  S G+A        + ++ ++D ALY AK++GRNR   FSD   +
Sbjct: 264 SPLP--VGDQTLIVPCSIGVASAMSA-DFARLLSQSDLALYHAKRNGRNRAEIFSDEMAS 320

Query: 265 T 265
           T
Sbjct: 321 T 321


>gi|167618394|ref|ZP_02387025.1| EAL/GGDEF domain protein [Burkholderia thailandensis Bt4]
 gi|257139814|ref|ZP_05588076.1| EAL/GGDEF domain-containing protein [Burkholderia thailandensis
           E264]
          Length = 772

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 103/208 (49%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVIIS-ITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +Y    N+ L++ S IT+++L  + ++  ++ +L      ++QL+  D L+GL N  A +
Sbjct: 278 DYHHTRNVYLLMTSFITLAMLAFFGVATGLIGKLLGREREMTQLAEFDLLTGLANRYATL 337

Query: 120 SSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            SL       S   +L+I+F D+D FK +ND  GH  GD V+   + +L         + 
Sbjct: 338 RSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVTNEGALA 397

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EF     G + E+ A  LA  + ++    +     G S  +  S GIA      E
Sbjct: 398 RIGGDEFVVVVKGENVERRAERLAEAIVRMFA--EPFDVRGSSFVLHASIGIALHSVENE 455

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +AD A+Y AK +G+N    ++
Sbjct: 456 SEIDLLKKADLAMYSAKDAGKNCYQFYA 483


>gi|91227127|ref|ZP_01261611.1| putative sensory box/GGDEF family protein [Vibrio alginolyticus
           12G01]
 gi|91188779|gb|EAS75066.1| putative sensory box/GGDEF family protein [Vibrio alginolyticus
           12G01]
          Length = 626

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 85/180 (47%), Gaps = 21/180 (11%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQIND 144
                ++  LS  D L+GL N   F   L  Y         +    +  FDID+FK+IND
Sbjct: 455 KELEEKLRNLSEKDGLTGLWNRRKFEEQLAQYAGIIERYPDSPPACLALFDIDHFKRIND 514

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GDKVI  +++ L+    +  FV R+GGEEFA     ++ +EA I+ N LR  ++
Sbjct: 515 ELGHDEGDKVICSVAETLLEEVRSTDFVSRVGGEEFAVIMPHTTLEEAEIVLNRLRVAVQ 574

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV---VCFSDI 261
                        IT+SAG ++       +     AD ALY +K +GRN V     + DI
Sbjct: 575 MRS-------DRGITVSAGYSDLTSDRTRT--YKCADIALYESKSAGRNCVSLCHSYDDI 625


>gi|83312662|ref|YP_422926.1| C4-dicarboxylate transport sensor protein dctB [Magnetospirillum
           magneticum AMB-1]
 gi|82947503|dbj|BAE52367.1| C4-dicarboxylate transport sensor protein dctB [Magnetospirillum
           magneticum AMB-1]
          Length = 560

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 12/199 (6%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SL 122
           +LVII    +    ++     +    S  ++  L+  D L+GL +               
Sbjct: 358 TLVIILAGFAT-HHWVDRERSRRNRASRQQVEYLATHDVLTGLFSRIVLDQFIGHGIARA 416

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                 ++++F D+D FK +ND  GH VGD V+   + +L         V R GG+EF  
Sbjct: 417 KRTGRGMAVLFIDLDQFKDVNDTLGHEVGDLVLKDAARRLQQTVREADVVIRQGGDEFIV 476

Query: 183 AALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRA 240
                 +  +   +A  ++  +     +I+  P  +++ S GIA    H E  S ++  A
Sbjct: 477 LLFDQPQASDVRQVAEKIQAAL-GVPYSITDPPQ-NLSASIGIACYPEHGETASLLLRHA 534

Query: 241 DQALYVAKKSGRNRVVCFS 259
           D A+Y AK+ G      F 
Sbjct: 535 DSAMYQAKERGGRCCRFFE 553


>gi|332669348|ref|YP_004452356.1| diguanylate cyclase/phosphodiesterase [Cellulomonas fimi ATCC 484]
 gi|332338386|gb|AEE44969.1| diguanylate cyclase/phosphodiesterase [Cellulomonas fimi ATCC 484]
          Length = 1213

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 12/184 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           + L  +    ++L+ +D L+GL N       +            ++ ++  DID+FK IN
Sbjct: 224 RRLQATALENARLALLDSLTGLPNRRMLADRMRRTIAEAHEDGTRVGLMLLDIDHFKDIN 283

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKI 202
           D+ GH  GD+++  ++++L         V RLGG+EFA       S + A  LA  +R +
Sbjct: 284 DSLGHDRGDELLEQVAERLRGALRGNDVVARLGGDEFAVLLPDVRSVENAERLARRVRGL 343

Query: 203 IENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              +   +     +H+  S G+A    H +  S+++  AD A+Y AK   R  V  +S  
Sbjct: 344 F--TTPFMLGELPLHVETSVGVACLPDHADDSSSLMRTADVAMYAAKHH-RTGVAVYSLD 400

Query: 262 ENNT 265
           E+++
Sbjct: 401 EDDS 404


>gi|289807206|ref|ZP_06537835.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 544

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 100 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 159

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF      +S    E  A+ + 
Sbjct: 160 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRIL 219

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 220 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSESLIRTADTAMYNAKEGGRGQFC 274

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 275 VFSPEMNQ 282


>gi|160896954|ref|YP_001562536.1| response regulator receiver modulated diguanylate cyclase [Delftia
           acidovorans SPH-1]
 gi|160362538|gb|ABX34151.1| response regulator receiver modulated diguanylate cyclase [Delftia
           acidovorans SPH-1]
          Length = 308

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 82/175 (46%), Gaps = 13/175 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
            L +    + +L+ +D L+GL N   F   L           E + +   DID+FKQ ND
Sbjct: 130 RLALQRQALERLAMVDGLTGLANRRHFDDVLERAYRRSLRTGEPVGLALIDIDHFKQYND 189

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD+ +  ++  L      P     R GGEEFA    G  E +A  +A   R+ +
Sbjct: 190 CYGHVQGDEALKAVAATLQRHARRPYDLAARFGGEEFALILPG--ESDAPAMAEHFRQEV 247

Query: 204 ENSQINISSGPSI-HITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
               I  ++ P+   +T+S G+    +    P+ T + +AD  LY AK  GRNR+
Sbjct: 248 LRLSIAHAASPTAPQLTVSCGVLTVRQPSAAPLETWLQKADGLLYQAKAQGRNRI 302


>gi|70734241|ref|YP_257881.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5]
 gi|68348540|gb|AAY96146.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5]
          Length = 422

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 10/172 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
             L      ++  +  D L+GL N + F   L          NE+++++F D D FK+IN
Sbjct: 234 THLQSENETLAHQASHDSLTGLPNRAFFEGRLIRALRSANKLNERMAVLFLDSDRFKEIN 293

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKI 202
           DNFGH  GD V+  ++ ++         V RLGG+EFA         ++A  +A+ +   
Sbjct: 294 DNFGHAAGDAVLVAVATRIRAQLREDDLVARLGGDEFAVLLTPLHRVEDAQRIADKIISS 353

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           +E   I +    SI  ++S GIA    H     +++  AD A+Y AK+  R 
Sbjct: 354 ME-VPIQLPGSLSILTSLSIGIAVYPDHGATPGSLLNAADAAMYQAKRGSRG 404


>gi|85710890|ref|ZP_01041951.1| GGDEF domain protein [Idiomarina baltica OS145]
 gi|85695294|gb|EAQ33231.1| GGDEF domain protein [Idiomarina baltica OS145]
          Length = 343

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 9/193 (4%)

Query: 72  VIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLG------- 123
           V     +SLL+  I    L  L     R  ++L+  D L+G+ N     + L        
Sbjct: 145 VAWRALVSLLVLMILTLTLVRLLTRMQRHFTELAVTDTLTGVYNRKQLQTDLEHLVALKK 204

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
            +   +S    DIDYFK++ND +GH  GD+++   +  +   F     V R+GGEEF   
Sbjct: 205 RHGRPISAALCDIDYFKEVNDKYGHFDGDRLLIQAAQLIKSSFRASDKVFRVGGEEFVIL 264

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
              +  + A   A  LR     +   +   P +++TIS G++E   +E     + RAD+ 
Sbjct: 265 MPDTDLEGATRAAEKLRATFSANHFELKEDP-VNMTISIGVSELESEENWLAWLERADKL 323

Query: 244 LYVAKKSGRNRVV 256
           LY AK  GRN+V 
Sbjct: 324 LYHAKDMGRNQVR 336


>gi|119715377|ref|YP_922342.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nocardioides sp. JS614]
 gi|119536038|gb|ABL80655.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nocardioides sp. JS614]
          Length = 883

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 78/185 (42%), Gaps = 10/185 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           +    + +       + + +  D L+GL N S     L             ++ +  D+D
Sbjct: 250 VVARDISDRLELEAELVRQTMHDALTGLPNRSFLTYRLTQAIAEGRRRGRPVAALLLDLD 309

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            F+  ND  GH  GD+V+  ++D+L V+      V R+GG+EF      +    A  LA 
Sbjct: 310 QFRAANDVHGHLTGDRVLTEVADRLRVLARPTDVVARIGGDEFVLVCPDTDVAAAGRLAE 369

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            + + +  + I +    ++ +  S GIA     +     ++  AD A+Y AKK GR R  
Sbjct: 370 QVIEAV-GAPIQV-EHRALRVGASVGIAVAPPLDCDAEVLLKHADAAMYEAKKRGRARSQ 427

Query: 257 CFSDI 261
            F   
Sbjct: 428 VFDPA 432


>gi|269964647|ref|ZP_06178885.1| putative sensory box/GGDEF family protein [Vibrio alginolyticus
           40B]
 gi|269830546|gb|EEZ84767.1| putative sensory box/GGDEF family protein [Vibrio alginolyticus
           40B]
          Length = 632

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 85/180 (47%), Gaps = 21/180 (11%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQIND 144
                ++  LS  D L+GL N   F   L  Y         +    +  FDID+FK+IND
Sbjct: 461 KELEEKLRNLSEKDGLTGLWNRRKFEEQLAQYAGIIERYPDSPPACLALFDIDHFKRIND 520

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GDKVI  +++ L+    +  FV R+GGEEFA     ++ +EA I+ N LR  ++
Sbjct: 521 ELGHDEGDKVICSVAETLLEEVRSTDFVSRVGGEEFAVIMPHTTLEEAEIVLNRLRVAVQ 580

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC---FSDI 261
                        IT+SAG ++       +     AD ALY +K +GRN V     + DI
Sbjct: 581 MHS-------DRGITVSAGYSDLTSDRTRT--YKCADIALYESKSAGRNCVSLCHSYDDI 631


>gi|190573501|ref|YP_001971346.1| putative transmembrane GGDEF family signalling protein
           [Stenotrophomonas maltophilia K279a]
 gi|190011423|emb|CAQ45041.1| putative transmembrane GGDEF family signalling protein
           [Stenotrophomonas maltophilia K279a]
          Length = 512

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/218 (27%), Positives = 91/218 (41%), Gaps = 10/218 (4%)

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCL 109
           LF  GL     +  ++     L  +     L     +     E      R++  +  D L
Sbjct: 275 LFEAGLNSPSRVRELIDHAQELATLRNLRELQDADQARRRADEFEARAKRLADQAHRDAL 334

Query: 110 SGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +G+LN     +         G     LS+ F D+D FK+IND  GH  GD+V+   + +L
Sbjct: 335 TGVLNRRQLEAVLEQEFLRAGRQGWPLSVAFIDLDDFKKINDAHGHLTGDEVLRAFAGKL 394

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                    V R GGEEF A    +SE  A  +   +   I  + +    G  + +T SA
Sbjct: 395 QGQLRHSDTVARFGGEEFVALLPNTSETVALDVIRRVLANIVATPMAELEGGPLFVTFSA 454

Query: 223 GIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVC 257
           G+A +   E    +  ++  AD  LY +K  GRNRV+ 
Sbjct: 455 GVATQGGYERFADVQDLLRAADDVLYRSKNLGRNRVIA 492


>gi|120598882|ref|YP_963456.1| diguanylate cyclase [Shewanella sp. W3-18-1]
 gi|120558975|gb|ABM24902.1| diguanylate cyclase [Shewanella sp. W3-18-1]
          Length = 937

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 87/209 (41%), Gaps = 12/209 (5%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
              + Y+L   + L I+ I + L +       +     +  R+  ++  D L+ L N + 
Sbjct: 731 LQWIRYLLFSAVILTIVMIAV-LAVNRRLNLEITRRISAEKRLQHVANHDVLTQLPNRAL 789

Query: 118 FISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
               L              +++F D+D FKQIND  GHP+GD ++  ++  L+       
Sbjct: 790 LDDRLAQALLSHQRDQAYFALLFIDLDEFKQINDQHGHPIGDSILTQVAQILLSSVRNSD 849

Query: 171 FVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC- 228
            V R GG+EF            A  +A+++ + +  S   +  G ++ + +S G+     
Sbjct: 850 TVARFGGDEFVILLNRVQDLDAATQVADNILQSL--SSPLLIEGQTVRVAVSIGVVLYPR 907

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +    ++ +A Q +Y AK SG      
Sbjct: 908 DGDTAIGLLKKAVQLMYQAKSSGGRCYRI 936


>gi|127512723|ref|YP_001093920.1| diguanylate cyclase [Shewanella loihica PV-4]
 gi|126638018|gb|ABO23661.1| diguanylate cyclase [Shewanella loihica PV-4]
          Length = 339

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 64/209 (30%), Positives = 100/209 (47%), Gaps = 12/209 (5%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSI------LKELFISYNRISQLSRIDCLSGLL 113
            LE +L     LV  S  I     Y +G +      +  L  +  R  Q    D L+G L
Sbjct: 129 SLEKVLGLVRDLVKESDDIRQSTEYFTGRLDKAQEEIAALREALKRSEQDVYHDALTGAL 188

Query: 114 NHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
           N  AF   L        E   ++  D+D+FK  ND +GH +GD V+  ++ +L       
Sbjct: 189 NRRAFDQDLKGLLAQSPEGTCLILADVDHFKSFNDTYGHHLGDNVLKAVAKRLNESCRDG 248

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITISAGIAER 227
           + + R GGEEFA     S +++A  LA+ +R+ +E   + +     +I  I+ S G++E 
Sbjct: 249 VKLYRYGGEEFALIVPNSHQRKARHLADAMRRTLEKISLKDRRKNQTIDKISASFGVSEW 308

Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVV 256
             K+   ++I R D  LY AK+ GRNRV+
Sbjct: 309 QAKDTFESLIERTDGFLYDAKRLGRNRVM 337


>gi|284028326|ref|YP_003378257.1| diguanylate cyclase [Kribbella flavida DSM 17836]
 gi|283807619|gb|ADB29458.1| diguanylate cyclase [Kribbella flavida DSM 17836]
          Length = 466

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/212 (24%), Positives = 96/212 (45%), Gaps = 22/212 (10%)

Query: 71  LVIISITISLLLGYISG--SILKELFISYNRISQLSRIDCLSGLLNH--------SAFIS 120
           L+  +  +S    +++   S+  +  +   ++    + D  + L              + 
Sbjct: 209 LLAAAALVSPWFAFLAVPISLTAQRALLLGQLESEVQTDPKTKLG-RVDWWRQRTEEMLR 267

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           +  +  E ++++  DID+FKQ+ND  GH VGD+ +  ++  L         +GR GGEEF
Sbjct: 268 TARTQREPMAVLLIDIDHFKQVNDRHGHLVGDEALRAVATILRSAIRAKDVIGRFGGEEF 327

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQI----------NISSGPSIHITISAGIAERC-H 229
             A   +   +AA+ A+ LR  +  S +                + H+T+S G+A     
Sbjct: 328 VIALPDTDGTDAAVTADRLRSAVAASPLAAMCAGVLDDPELDPDTFHLTVSVGVAVYPSD 387

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              +  ++ RAD+A+Y AK +GR+RV   +D 
Sbjct: 388 GHTVDELLRRADRAMYAAKAAGRDRVRLAADA 419


>gi|254503193|ref|ZP_05115344.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
 gi|222439264|gb|EEE45943.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
          Length = 410

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 73/259 (28%), Positives = 117/259 (45%), Gaps = 24/259 (9%)

Query: 10  SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFY-----IGLTPFYGLEYI 64
           S+W     N E  +  + +++    F    A ++ I + F++      +   P   L Y 
Sbjct: 139 SVWRVFRLNSEHLT--SVILFMVGSFLEASAYLMTIGSQFIYQHESLKVFANPIQPLAY- 195

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
                 LV++ + I ++        ++ + +   R  + +  D L+GL N  AFI +   
Sbjct: 196 ------LVLLMVAIVIVSASFVAMAIERIQV---RFEKQALTDSLTGLANRRAFIKAAKR 246

Query: 125 ------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
                   +  +++  DID+FK IND FGH  GD+V+A     +  +F   +  GR+GGE
Sbjct: 247 WFSSTAQTQAFTLILIDIDHFKSINDQFGHTAGDRVLASFGTAMKSIFPRAIPPGRIGGE 306

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
           EFA     + + +A  L   LR++I    I   S  S  IT+SAG+              
Sbjct: 307 EFAVLLPETEKADAVHLLGRLREVISQCAICPKSEAS-GITVSAGLITATTSHDFEQAFD 365

Query: 239 RADQALYVAKKSGRNRVVC 257
            ADQ LY AKK+GRNR V 
Sbjct: 366 HADQLLYEAKKTGRNRHVA 384


>gi|158316524|ref|YP_001509032.1| diguanylate cyclase [Frankia sp. EAN1pec]
 gi|158111929|gb|ABW14126.1| diguanylate cyclase [Frankia sp. EAN1pec]
          Length = 557

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 102/260 (39%), Gaps = 31/260 (11%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPF--YGLEYILVENLSLVIISITISLL 81
           P     Y  + +++  A  + +         +  F  YG+         L+++++   ++
Sbjct: 297 PQATWAYVVLPYAVLGAAGLLVVGKLSIGTQVDRFETYGIA-------GLLLVALVRQMV 349

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---------------- 125
               +  +L  +      +   +  D L+GL N + F   L                   
Sbjct: 350 TLVENARLLTGIRDQERELHHQAFHDPLTGLANRALFTRRLQRALTRATDDAGDASDAGG 409

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              LS++F D+D FK IND FGH  GD+++   +++L     T   V RLGG+EFA    
Sbjct: 410 GTSLSVLFLDLDEFKHINDTFGHAAGDELLRISAERLRAGTRTVDTVARLGGDEFAVILD 469

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQ 242
           G   +    +   L   I+     + +G       S G+              ++++AD 
Sbjct: 470 GDGLRNPRRVGERLAAAIQA--PCLLAGRPYTPRASLGLVTLDSPARPADPDVLLHQADL 527

Query: 243 ALYVAKKSGRNRVVCF-SDI 261
           A+Y AK+    R+  + SD+
Sbjct: 528 AMYAAKRERAGRLKVYRSDM 547


>gi|54023296|ref|YP_117538.1| hypothetical protein nfa13290 [Nocardia farcinica IFM 10152]
 gi|54014804|dbj|BAD56174.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 318

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 9/182 (4%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDID 137
           L       ++E+    +R+   +  D L+ L N +     +          + ++  D+D
Sbjct: 126 LSAKVSRRVQEIAALQHRLRHEATHDALTDLANRTLLQDRVRQMAADPTSCVGLLLIDLD 185

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FKQIND +GH VGD+V+  L+++L  V      + R GG+EF   A+       A +A+
Sbjct: 186 RFKQINDCYGHAVGDEVLVELANRLREVCPPDTVICRYGGDEF-VLAVNRDGDSLAEIAH 244

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
            +   + +  +  S+GP + ++ S G A          + ++ RAD+A+Y AK +G  R 
Sbjct: 245 RIVAALRD-PVWSSAGP-VPVSASVGTAFDPPGVPCDFTDLLRRADRAMYSAKTAGGRRF 302

Query: 256 VC 257
           V 
Sbjct: 303 VF 304


>gi|218676573|ref|YP_002395392.1| Similar to sensory box/GGDEF family protein [Vibrio splendidus
           LGP32]
 gi|218324841|emb|CAV26570.1| Similar to sensory box/GGDEF family protein [Vibrio splendidus
           LGP32]
          Length = 634

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 65/211 (30%), Positives = 96/211 (45%), Gaps = 19/211 (9%)

Query: 64  ILVENLSLVIISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           ++ E L +  I  +  ++  Y++  + + +     N++  LS  D LSG  N   F   L
Sbjct: 430 LITEILRIQTIKDSKGVIQFYVASFVDISKHKELENKLRNLSEKDALSGCWNRRKFDLEL 489

Query: 123 GSYNEKLS---------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                ++S         +   DID+FK+IND FGH  GDK I  ++  L        FV 
Sbjct: 490 RDECSRVSRYPTREQSCLAILDIDHFKRINDRFGHDYGDKAIQIVAQVLQRECRDTDFVA 549

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R+GGEEF      ++ +EA  + N LR  I     N+       +TIS GI     +  +
Sbjct: 550 RIGGEEFGVILPHTTPKEADYVLNRLRIAISIEFDNV-------VTISGGITNLTSEPAL 602

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +     AD ALY AK  GRN V  F D E +
Sbjct: 603 N--YKCADLALYEAKAVGRNNVCLFLDSEMS 631


>gi|122879223|ref|YP_201499.6| c-di-GMP phosphodiesterase A [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 728

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 12/184 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           E      R+ QL+  D L+GL N   F +             E  ++VF +ID FK IND
Sbjct: 290 EREQIRQRVHQLAFYDTLTGLPNRIMFSARAEQALTQAEYAGEPAALVFINIDRFKLIND 349

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH  GD ++  ++ ++         + RL G+EFA A    S ++A+ +A  +   I 
Sbjct: 350 SQGHAAGDGLLRDIALRINDQLTATAMLARLSGDEFALALPQCSAEQASAVAERVLVSIA 409

Query: 205 NSQINISSGP-SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           N    +  G  ++H + S G+A        I+ ++  AD A+  AKK G  R   FS   
Sbjct: 410 N---PLPVGHMTVHPSASIGVAMFPEDGREINILLRHADLAMNRAKKEGGGRFRFFSADM 466

Query: 263 NNTC 266
           N   
Sbjct: 467 NRMA 470


>gi|77359597|ref|YP_339172.1| two-component response regulator [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874508|emb|CAI85729.1| putative two-component response regulator with GGDEF domain
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 307

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 11/184 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDID 137
           I+ + + E   + N+  QL+R+D L+ + N   F S L S           LSI   D+D
Sbjct: 120 INHNNITERKQAENKAKQLARLDGLTKIANRRYFDSVLNSEWRRCERLALPLSIAMIDVD 179

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
            FK +ND +GH  GD  +  +++ L            R GGEEF      ++  +A    
Sbjct: 180 NFKLLNDTYGHQQGDVCLQQIANLLKQYSKRPSDLCARFGGEEFVLIYGNTNSLQATANI 239

Query: 197 NDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRN 253
           + +   ++   I N  S PS  +T+S GIA            ++  AD+ LY AK +G+N
Sbjct: 240 DRIVTQLKALNIKNKHSLPSKIVTVSVGIATIIPSNNSCAEDLLNEADKLLYKAKTAGKN 299

Query: 254 RVVC 257
            V  
Sbjct: 300 SVRV 303


>gi|323492449|ref|ZP_08097597.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
 gi|323313236|gb|EGA66352.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
          Length = 433

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 12/176 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           + + L       ++L+  D L+G +N  +    L S         ++LS+++ DID+FK 
Sbjct: 261 LNRHLKEQNVHFAELANRDALTGAMNRHSIRDWLESNYQGQNTQAKRLSVMYLDIDHFKV 320

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH +GD ++   +  ++        + R GGEEF     G + +EAA LA  +R 
Sbjct: 321 VNDKYGHAMGDDILREFTMVVLSSLSASERLVRWGGEEFVVFCPGRNSEEAAELAEKVRH 380

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +E+            +T S G+A    +     ++ RAD+ALY+AK+ GRNRVV 
Sbjct: 381 RVESHLWVHGD----PLTTSIGVASLGEERTNEMLV-RADEALYMAKREGRNRVVV 431


>gi|238790319|ref|ZP_04634092.1| Response regulator receiver modulated diguanylate cyclase [Yersinia
           frederiksenii ATCC 33641]
 gi|238721583|gb|EEQ13250.1| Response regulator receiver modulated diguanylate cyclase [Yersinia
           frederiksenii ATCC 33641]
          Length = 312

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 11/175 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145
           L    + + QL  +D L+ + N   F   L    +        LS++  D+D+FK+ ND 
Sbjct: 129 LKAQSDLLRQLVYLDGLTEVHNRRYFDKQLEREWKLSNRNQTPLSMIMIDVDFFKKYNDL 188

Query: 146 FGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD  +  ++  +          V R GGEEF      +    A  +A  +R  I 
Sbjct: 189 YGHQKGDDCLRNIAKVIRDTLKRPADLVARYGGEEFVCLLPDTGLAGAMDIAETIRLQIL 248

Query: 205 NSQINISSGPSI-HITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +I  S       ++IS G+   E    +  +T++ +AD  LY AK+ GRN+ +
Sbjct: 249 EQKIPHSGSLVYPFVSISLGVCCKENQSDDMPTTLLRQADLQLYQAKEYGRNQTI 303


>gi|254520960|ref|ZP_05133015.1| diguanylate cyclase [Stenotrophomonas sp. SKA14]
 gi|219718551|gb|EED37076.1| diguanylate cyclase [Stenotrophomonas sp. SKA14]
          Length = 447

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 76/176 (43%), Gaps = 21/176 (11%)

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
            ++  D L+GL    AF  +L       SI   D+D+FK  ND  GH  GD V+  ++ +
Sbjct: 261 HMAFRDELTGLPGRRAFNETLQRARGTYSIAMVDVDHFKSFNDTHGHDTGDDVLRLVASR 320

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS--------- 212
           L  V G      R GGEEFA   L             LR+ IE++++ +           
Sbjct: 321 LSRV-GDGGRAFRYGGEEFAVVFLDRPAAACVDAVEALRQSIEDTRMQLRDRSTRSRDDD 379

Query: 213 -----------GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                      G  + +T+S G+A+       + +I  AD ALY AK  GRN+V  
Sbjct: 380 TGRQQRGRGGSGQVVQVTVSIGLADSRENPRPAAVIKAADLALYRAKDGGRNQVHA 435


>gi|148975502|ref|ZP_01812373.1| PAS:GGDEF [Vibrionales bacterium SWAT-3]
 gi|145964930|gb|EDK30181.1| PAS:GGDEF [Vibrionales bacterium SWAT-3]
          Length = 822

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 11/190 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNEK---LSIVF 133
           + G +S + L +L         L+  D L+GL N           +    E      +++
Sbjct: 368 MAGRLSEAYL-DLTEEKKNFDFLAHHDPLTGLANRLLATKKLDEEIKRSREHNSFFLLLY 426

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID FK IND+ GH  GD ++  +S+ L  + G   FV R+GG+EF       S  E  
Sbjct: 427 LDIDEFKTINDSLGHGQGDNLLINVSNILTTLVGNNGFVARMGGDEFMVVFSDISLSEGE 486

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
            LA+ L + +   +   +   SI +  S G+ E   H     T+I  AD A+Y AK++GR
Sbjct: 487 QLADRLNQSLR--KPYYADNNSIFVAASIGVCEYPTHGSSGETLIRNADTAMYHAKRNGR 544

Query: 253 NRVVCFSDIE 262
           ++   ++D  
Sbjct: 545 DQYRVYADKM 554


>gi|119468948|ref|ZP_01611973.1| putative two-component response regulator with GGDEF domain
           [Alteromonadales bacterium TW-7]
 gi|119447600|gb|EAW28867.1| putative two-component response regulator with GGDEF domain
           [Alteromonadales bacterium TW-7]
          Length = 309

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 84/180 (46%), Gaps = 11/180 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           I+   + E  +    + QL+ ID L+ + N   F S L          N  LS+   D+D
Sbjct: 119 ITHQNITERKLVEEEVQQLANIDGLTDIFNRGYFDSYLEQEWNRCKRLNMPLSLAIIDLD 178

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
            FK +ND +GH  GD+ +  ++  L            R GGEEFA     +S ++A  + 
Sbjct: 179 DFKLLNDTYGHQQGDESLKQVAAILEQYTKRPSDICARFGGEEFALIYGNTSSEQATTVI 238

Query: 197 NDLRKIIENSQI-NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRN 253
           N + + +    I N  S PS  +T+S G+A    C    I ++I  AD  LY AK +G+N
Sbjct: 239 NAIVEQLRRLNICNEHSLPSKTLTVSVGLASVIPCSGYTIESMIKEADDLLYKAKANGKN 298


>gi|293607462|ref|ZP_06689800.1| sensory box/GGDEF family protein [Achromobacter piechaudii ATCC
           43553]
 gi|292814164|gb|EFF73307.1| sensory box/GGDEF family protein [Achromobacter piechaudii ATCC
           43553]
          Length = 726

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 6/178 (3%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQIND 144
             + E   S +R+ +L+  D L+ L N  A+   L       ++L+++  D+D FK+IND
Sbjct: 289 RDITERRQSEDRLYRLATRDPLTDLPNRGAWRECLTKALKKEKQLTVLLLDLDGFKEIND 348

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH  GD V+  L+ +L  +F   + +GRLGG+EF     G+  + A   A  L   + 
Sbjct: 349 TFGHSAGDAVLKQLAARLDALFDQTIMLGRLGGDEFVVLLPGAENRAAIAAAEALIASLS 408

Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                +  G  I + +S G+A    H      ++  AD ALY AK +G+ R   F+  
Sbjct: 409 APYDYL--GHLIEVGVSVGVALGPQHGSVPEDLLGAADLALYKAKAAGKGRYELFTPA 464


>gi|218894116|ref|YP_002442985.1| putative sensory box protein [Pseudomonas aeruginosa LESB58]
 gi|218774344|emb|CAW30161.1| putative sensory box protein [Pseudomonas aeruginosa LESB58]
          Length = 899

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 99/212 (46%), Gaps = 16/212 (7%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNH 115
           P++G        LSL  +   +  L  YI     + +  ++   I +L+  D L+GL N 
Sbjct: 430 PYWG-------QLSLSKVYDDLGELTHYIGIYEDITQNKLAQQHIEKLAYRDNLTGLANR 482

Query: 116 SAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
             FI +L        +  LS++  DID FK+IND+ GH  GDK++  L+ +L    G   
Sbjct: 483 HYFIGALEERLESSGDRPLSLLLVDIDNFKRINDSLGHQTGDKLLVSLARRLRSCLGDGA 542

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-H 229
            + R    EFA     ++ ++   +A  +  +++           I+IT S G+A    H
Sbjct: 543 TLARFASNEFAVLLDDTAVEKGESIAAQVLHMLDKPLF--VDNQLINITGSIGLASAPQH 600

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                T++  A  AL+ AK +G+++V  F++ 
Sbjct: 601 GCDPQTLMKYAGLALHKAKANGKHQVQVFTEA 632


>gi|156933995|ref|YP_001437911.1| hypothetical protein ESA_01821 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532249|gb|ABU77075.1| hypothetical protein ESA_01821 [Cronobacter sakazakii ATCC BAA-894]
          Length = 352

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 64/254 (25%), Positives = 111/254 (43%), Gaps = 22/254 (8%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIF-----IANIFLFYIGLTPF-YGLEYILVEN-----L 69
           + SP T +   +I  +  +A   F      A +     G T    GL   L  +      
Sbjct: 99  ALSPLTSVTIATILLADRLAAGGFPLMRQAAGVMALMFGATWMALGLPVTLSVSSRTLYA 158

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSL 122
           +L +IS+ + L L  +S ++   L      + + +  D L  + N           +   
Sbjct: 159 TLPLISVYV-LALSMVSHALSARLREKTRELERFANTDPLLNIANRRRLEHDIDAALQRF 217

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
               +  +++F DID FK  ND +GH  GD+++   SD L         V R GG+EF  
Sbjct: 218 HQSEQPAALMFIDIDDFKAANDRYGHEAGDQLLVTFSDILRAATRGGDTVARFGGDEFVV 277

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRAD 241
               +S   A  +A+ +  + + +Q+++   P++  T+S GIA    +    S  +  AD
Sbjct: 278 LLPDTSFGRACAVADRI--MAQTAQMDVFPKPALRCTLSIGIARATAEMREASQWLKAAD 335

Query: 242 QALYVAKKSGRNRV 255
           +ALY AK+ G+NR+
Sbjct: 336 EALYSAKREGKNRI 349


>gi|152982630|ref|YP_001355220.1| hypothetical protein mma_3530 [Janthinobacterium sp. Marseille]
 gi|151282707|gb|ABR91117.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 356

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/195 (28%), Positives = 85/195 (43%), Gaps = 29/195 (14%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLS------------------ 130
           + +Y  +   S  D L+GLLN   F            +E ++                  
Sbjct: 145 YRNYQSLLDYSERDSLTGLLNRKTFDEKFARMVNAKPSESVARDDEGREERRHHADVKSQ 204

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            +   DID+FK++ND FGH  GD+V+  +++ L   F     V R GGEEF      ++ 
Sbjct: 205 WLAVIDIDHFKRVNDQFGHLYGDEVLILVANVLRTSFRAQDRVFRFGGEEFVVLLRSATL 264

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            +A ++    R  IE             IT+S G A    + P+  I+  ADQALY AK 
Sbjct: 265 ADAQMVFERFRTSIEQHSFPQIG----QITVSIGFASISQETPV-VILGHADQALYYAKD 319

Query: 250 SGRNRVVCFSDIENN 264
            GRN+V  + ++ + 
Sbjct: 320 HGRNQVCYYDELLDQ 334


>gi|323172353|gb|EFZ57990.1| protein gmr [Escherichia coli LT-68]
          Length = 473

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 89/186 (47%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S  IA    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVDIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|296535607|ref|ZP_06897787.1| diguanylate kinase [Roseomonas cervicalis ATCC 49957]
 gi|296264062|gb|EFH10507.1| diguanylate kinase [Roseomonas cervicalis ATCC 49957]
          Length = 459

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 2/163 (1%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
              +R  +L+  D L+GL N    I  L     N   +++  D+D FK +ND +GH VGD
Sbjct: 282 AELDRSLELAVTDSLTGLRNRRYIIRHLEGLLRNGPAALLMLDVDRFKAVNDTYGHGVGD 341

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++ ++         V R GGEEF  A   ++++EA  +A+ LR  +  + + +S 
Sbjct: 342 IVLREVAARMKRHLRDVDVVARFGGEEFVVAMAAATQEEAMQIADRLRLSMAENPVPVSP 401

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              + IT S G+A     E +  ++  AD ALY AK +GRNR+
Sbjct: 402 ERRLGITASIGVALAKGGEALPRLMAAADAALYRAKANGRNRI 444


>gi|288920156|ref|ZP_06414473.1| diguanylate cyclase [Frankia sp. EUN1f]
 gi|288348487|gb|EFC82747.1| diguanylate cyclase [Frankia sp. EUN1f]
          Length = 582

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 13/176 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDY 138
           +  +L +L  S   +  L+  D L+GL N + F++ L            ++S++F D+D 
Sbjct: 407 NAHLLTQLEGSQRELHHLAFHDPLTGLANRALFVARLNRAMADRRLRPHRISLLFCDLDG 466

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND FGH  GD+++  ++ +L         V RLGG+EFA     S  ++   +   
Sbjct: 467 FKGVNDRFGHAAGDELLRVVAARLAGQVRPDDSVARLGGDEFAILL-ESDSRDPEAVGRR 525

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSG 251
           L + +  + I + S     I  S G+              +++RAD A+Y AK +G
Sbjct: 526 LTRAVR-APIQLRS-CQCRIDASVGLVTVEEDAGTVSAEALLHRADLAMYHAKATG 579


>gi|86740318|ref|YP_480718.1| diguanylate cyclase [Frankia sp. CcI3]
 gi|86567180|gb|ABD10989.1| diguanylate cyclase (GGDEF domain) [Frankia sp. CcI3]
          Length = 588

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/277 (20%), Positives = 110/277 (39%), Gaps = 34/277 (12%)

Query: 6   KDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPF--YGLEY 63
            D L+       +L    P     +  + +++  A  + I         L  F  YG+  
Sbjct: 290 PDSLTTDSLTTDSLTPGGPRAVWAHAVLPYAVLGAAGLLILGKLSTGAQLDRFEAYGM-- 347

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
                + L+++++   ++    S  +L E+     ++   +  D L+GL N + F   L 
Sbjct: 348 -----VGLLLVALVRQMVTLAESNRLLAEVRQRARQLHHQAFHDPLTGLANRALFTRRLQ 402

Query: 124 SYNEK------------------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
                                  +S++F D+D FK +ND  GH  GD+++   +++L   
Sbjct: 403 RALTHDPDNPDNPDACHAGDSGTVSVLFLDLDGFKLVNDTLGHAAGDELLKISAERLRAD 462

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                 V RLGG+EFA    GS   +A  +   L   ++  +  + +G       S G+ 
Sbjct: 463 TRAVDTVARLGGDEFAIIL-GSGGVDARKVGERLAMAVQ--EPCLLAGQIYTPRASFGLV 519

Query: 226 ERCHKEP----ISTIIYRADQALYVAKKSGRNRVVCF 258
                        +++++AD A+Y AK+    R+V +
Sbjct: 520 TLDGSTTRPASPDSLLHQADLAMYAAKRERAGRLVVY 556


>gi|28868943|ref|NP_791562.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28852183|gb|AAO55257.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 818

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 16/190 (8%)

Query: 83  GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIV 132
           G +SG++L    ++  R     +S  +  D L+GL+N S F   L    +        ++
Sbjct: 348 GVVSGAVLVLHDMTQERQYIADLSWQAAHDPLTGLVNRSEFERRLQQVLDDSSTGSHCLM 407

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F D+D FK +ND  GH  GD+++  L   L         + RLGG+EF    +  +   A
Sbjct: 408 FLDLDQFKLVNDTGGHAAGDELLRQLCQALPQGLRDSDTLARLGGDEFGVLLVDCTTSTA 467

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI---IYRADQALYVAKK 249
             +A  LR+I++     +  G     T+S G+      +  +T+   +  AD A Y+AK+
Sbjct: 468 HDIAEALREIVQGLHF-MWKGRPFMTTVSIGLVHL--GDTPATLEGSLSAADMACYMAKE 524

Query: 250 SGRNRVVCFS 259
            GRNRV  +S
Sbjct: 525 KGRNRVQVYS 534


>gi|312197836|ref|YP_004017897.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EuI1c]
 gi|311229172|gb|ADP82027.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EuI1c]
          Length = 828

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 108/246 (43%), Gaps = 18/246 (7%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           P    I+  + +     TV  I  +      L        +L   L L ++     L+  
Sbjct: 303 PSWPWIHVYVPYLPLTVTVAIILGLAASGAALGGV-----LLYLALILAMLVAFRQLVTV 357

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
             +  +L E+  +  R+   +  D L+GL N + F   L             ++++F D+
Sbjct: 358 AQNVRLLVEVQAAQVRLRYQAFHDLLTGLPNRAYFTGELERAVGEHRSVGRPVTVMFVDL 417

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAIL 195
           D FK +ND  GH  GD ++A ++D+L         V RLGG+EFA     + +  + AI 
Sbjct: 418 DDFKSVNDTLGHAAGDDLLAGVADRLRGAVRGNDLVARLGGDEFAVLLAEADQACDPAIT 477

Query: 196 ANDL-RKIIENSQINIS-SGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKS 250
           A+ + +K++       S  G   ++  S G+A    + P+     +++RAD A+Y AK+ 
Sbjct: 478 ADRVGQKVLAAMGPAFSLHGHRRNVHASVGLAMADSEAPVEVAEQLLHRADSAMYAAKRG 537

Query: 251 GRNRVV 256
            +  +V
Sbjct: 538 AKGGLV 543


>gi|229492096|ref|ZP_04385906.1| diguanylate cyclase [Rhodococcus erythropolis SK121]
 gi|229320993|gb|EEN86804.1| diguanylate cyclase [Rhodococcus erythropolis SK121]
          Length = 361

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 101/234 (43%), Gaps = 27/234 (11%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101
           VI    I    +  +        L   L    +S+ +  L  ++ G++ + L +S  R  
Sbjct: 103 VIMGHTIVAIALAWSVSIAAAEGLASALVSCAVSVAVIWLPVFMIGTLRRSLEVSRARYR 162

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL N   F+  +  Y  +       +  +  D+D+FKQIND+ GH  GD V
Sbjct: 163 ELANTDPLTGLPNRRGFLDRVERYTRENSSSASEVGFLVIDVDHFKQINDHLGHAAGDDV 222

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  +        GT + VGR GGEEF A    S+  E   LA  +R  + +         
Sbjct: 223 LNEVVAATRRAVGTDVLVGRFGGEEFVACFPASNFDEVVTLAESIRSAVAD--------- 273

Query: 215 SIHITISAG---IAERCHK--------EPISTIIYRADQALYVAKKSGRNRVVC 257
           S  +T+S G    A   H         E +  +  RAD  +Y AK +GR+ V C
Sbjct: 274 SCDVTVSIGGIFCAVDDHGPAPSMTLNEFVDVLTCRADTLMYAAKAAGRDTVRC 327


>gi|228903775|ref|ZP_04067892.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222]
 gi|228855864|gb|EEN00407.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222]
          Length = 909

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 9/184 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
           Y+    + E      +I+ L+  D L+ L N  AF   L           +  +++F D+
Sbjct: 459 YLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKPFAVMFLDL 518

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK IND  GH VGD ++  ++ +L  +  + M + RL G+EF        ++      
Sbjct: 519 DRFKVINDTLGHRVGDLLLIAVAKRLERISTSNMKLARLAGDEFTILIENYKKKPDVQKM 578

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
            D+     N    I +   + I+ S GIA      E   +I+  AD A+Y AK  G+N  
Sbjct: 579 ADIIVAAMNEPFEIENQH-LQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNGS 637

Query: 256 VCFS 259
             ++
Sbjct: 638 SLYT 641


>gi|323212725|gb|EFZ97540.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
          Length = 524

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 80  AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 139

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 140 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 199

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 200 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSESLIRTADTAMYNAKEGGRGQFC 254

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 255 VFSPEMNQ 262


>gi|114562009|ref|YP_749522.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114333302|gb|ABI70684.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 627

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 8/168 (4%)

Query: 95  ISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           I      +L+  D L+ L N          F+ S     +  SI+ FD D+FK +ND  G
Sbjct: 458 IRKQLFRRLALTDELTKLANRRDTYSQGHYFLKSSKLSGKPFSIISFDADHFKMVNDTLG 517

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GDKV+  L+     +      VGR+GGEEF        + +A  +AN L + I +  
Sbjct: 518 HDMGDKVLVKLASISASMMRDTDVVGRVGGEEFLILLPNIDKTKAIEIANRLIETIADYD 577

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                 P++H T+SAG+A   ++E +S ++ +AD+ALY AK +GRN V
Sbjct: 578 WT-QIAPNLHQTVSAGVASYSNEEDLSPLLLKADKALYSAKAAGRNCV 624


>gi|65319824|ref|ZP_00392783.1| COG5001: Predicted signal transduction protein containing a
           membrane domain, an EAL and a GGDEF domain [Bacillus
           anthracis str. A2012]
          Length = 443

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 86/176 (48%), Gaps = 10/176 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDN 145
           +    ++I+ L+  D ++ + N   F   L    E+         +++ D++ FK IND 
Sbjct: 1   MKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIERAQKTQGEFGLLYIDLNRFKTINDT 60

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH +GD V+  ++ +        + + R+GG+EFA      +EQ+   L  +L +I E 
Sbjct: 61  MGHSIGDSVLKEVAKRFRTCLSPSIPLARIGGDEFAVLVHNHTEQQLLDLCENLFRITE- 119

Query: 206 SQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +  + +  S ++++S GIA         +T++  AD A+Y AK+ G N V  + +
Sbjct: 120 -KPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMYSAKEKGNNAVCMYDE 174


>gi|332535546|ref|ZP_08411321.1| hypothetical protein PH505_cy00160 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035045|gb|EGI71563.1| hypothetical protein PH505_cy00160 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 257

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 93/197 (47%), Gaps = 20/197 (10%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFF 134
           L  +    + E      +    +  D L+GLLN  A    L         +NE L ++  
Sbjct: 66  LVEVILHDVTERAEREQQTRFEADHDPLTGLLNRRAGEKRLKKALRECIKHNEHLVLMMI 125

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAA------ALGS 187
           D+D FK IND +GH  GDKV+  ++ +   +F        RLGG+EF  A          
Sbjct: 126 DLDKFKPINDTYGHEAGDKVLIEIAHRFKTLFHEKNDMCIRLGGDEFIVAQQIKTYDKTE 185

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYV 246
           ++Q+A  L N+L++     Q++IS+  +  +  S GIA        +  +++  D+ LY 
Sbjct: 186 TQQKAIALLNELQQ-----QVSISNTKTCAVGASIGIAIAPYDGNELHQLMHNGDKTLYH 240

Query: 247 AKKSGRNRVVCFSDIEN 263
            K++GR +V  + DI+N
Sbjct: 241 VKETGRGKVAFYDDIKN 257


>gi|262403046|ref|ZP_06079606.1| GGDEF family protein [Vibrio sp. RC586]
 gi|262350545|gb|EEY99678.1| GGDEF family protein [Vibrio sp. RC586]
          Length = 391

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 101/249 (40%), Gaps = 24/249 (9%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
             + +S  I   +    +F  Y          Y L+   +L IIS T S    Y     +
Sbjct: 122 MGVVYSAMICLAMTATIVFHHYQAGPTHVEHSYFLLSLFALTIISNTAS----YFFSRAI 177

Query: 91  KELFISYNR-ISQLSRIDCLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQI 142
             +   Y   I +L+ +D L+GL N  +F       L     +    ++VF DID FKQI
Sbjct: 178 NYIHTLYQEGIEELAYLDPLTGLANRWSFESWANEKLKEQQGEDTITALVFLDIDNFKQI 237

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMF--------VGRLGGEEFAAAALGS-SEQEAA 193
           NDN+GH VGD+V+   + +L                 + R  G+EF     G  S ++  
Sbjct: 238 NDNYGHDVGDQVLKHFAHRLRNNLRNKDRATNKHDYSIARFAGDEFVLMLYGVKSLRDLD 297

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGR 252
            +   +  +  +           H+T+S G+A        +  +   AD+A+Y AK  G+
Sbjct: 298 HILERISNLFIDRYPETDLLN--HLTVSIGVAIYPKDAITLFELTRCADKAMYAAKHGGK 355

Query: 253 NRVVCFSDI 261
           N+   + D 
Sbjct: 356 NQYRYYQDA 364


>gi|226356807|ref|YP_002786547.1| diguanylate cyclase [Deinococcus deserti VCD115]
 gi|226318797|gb|ACO46793.1| putative diguanylate cyclase/phosphodiesterase; putative membrane
           protein [Deinococcus deserti VCD115]
          Length = 757

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 109/244 (44%), Gaps = 20/244 (8%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
           F+     ++A  + ++   L Y+    F   E   V  ++ V+  +T+S    +++    
Sbjct: 261 FAQVALPYLAIAMALSLAILHYL----FPDHEAGGVILMAFVV--VTLSSGRQFLTQQEA 314

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQIND 144
           ++L      +   ++ D L+GL+N    +  L    E+      ++++F D+D FK +ND
Sbjct: 315 RQL---QRDLDLQAKHDPLTGLVNRGHLVQLLDYAIERADSRYGVAVLFIDLDRFKSVND 371

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKII 203
            +GH  GD ++  ++ +L         V R GG+EF   A G     A   L   L + +
Sbjct: 372 IYGHTAGDNLLRNVAQRLQNEVRRNDIVARQGGDEFVVVATGVLHASAVHDLGRRLLQAL 431

Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD-I 261
             S+       S+ ++ S G+     +    S  +  AD A+Y AK+ GRN V  ++  I
Sbjct: 432 --SRPYTVGTESVTLSASIGVTLCPAESVDASEALRNADIAMYEAKRRGRNSVQFYNQHI 489

Query: 262 ENNT 265
           E  T
Sbjct: 490 EKQT 493


>gi|290894266|ref|ZP_06557234.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J2-071]
 gi|290556205|gb|EFD89751.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J2-071]
          Length = 375

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 107/232 (46%), Gaps = 11/232 (4%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           FS F+A +I      L+Y       G      E +   ++    +LL+ Y    I K   
Sbjct: 140 FSRFVALIILNFPAILYYFVNNFDEGRILQGFEIIEYFLLFFVTALLVFYACNYIDKSNL 199

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
           +  N +++ +  D L+ L N   F               + LS+   DID+FK+IND  G
Sbjct: 200 VIQN-LTETAMTDSLTNLPNMRFFTQQFGWIFTKSQKRKKSLSLFIIDIDHFKEINDFHG 258

Query: 148 HPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  G+ V+A  S  L    F       R+GGEEFA        ++AA++A+  R+ +E +
Sbjct: 259 HQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTEQAALIADFFREEVERA 318

Query: 207 QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +    +  S  +T+S G+A    H     ++   ADQALY AK+SGRN++  
Sbjct: 319 KFPY-NPASGKVTVSIGVASASSHFSTTESLFEAADQALYQAKQSGRNQIAV 369


>gi|239628812|ref|ZP_04671843.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518958|gb|EEQ58824.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 701

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 10/179 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQI 142
            + E   +  ++ + +  D L+GL N       + S+      ++  + +  DID FK +
Sbjct: 522 DIDEDKRAAAQMQKRAETDALTGLPNRGTVQQLVESHLKHCGPDQNHAFLLIDIDNFKWV 581

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRK 201
           ND FGH  GD+V++  S  L          GRLGG+EF        S ++   +A  L +
Sbjct: 582 NDTFGHQRGDEVLSDASALLREQVRPCDVAGRLGGDEFVVFMDDVPSVEQVMEIAARLGE 641

Query: 202 IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  N   +    P   ++IS GIA    H      +   AD+ALY +K  GRNR   +S
Sbjct: 642 LF-NHSFSFGKDPG-SVSISIGIALSPAHGTTFDELYRNADKALYESKNHGRNRYSIYS 698


>gi|218895683|ref|YP_002444094.1| sensory box/GGDEF family protein [Bacillus cereus G9842]
 gi|218544852|gb|ACK97246.1| sensory box/GGDEF family protein [Bacillus cereus G9842]
          Length = 567

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 6/174 (3%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGH 148
            L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  GH
Sbjct: 134 RLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLGH 193

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD +++ ++ +L  V G    + RLGG+EF        + + + LA  +    +    
Sbjct: 194 MIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQA--P 251

Query: 209 NISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            +  G  ++I+ S G+         + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 252 FMLEGHEVYISASLGLCSYPQDGLDVETLLKNSDLAMYSAKEQGRNAACFFTDE 305


>gi|111221089|ref|YP_711883.1| putative sensory box/GGDEF family protein [Frankia alni ACN14a]
 gi|111148621|emb|CAJ60294.1| Putative sensory box/GGDEF family protein [Frankia alni ACN14a]
          Length = 814

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 13/193 (6%)

Query: 83  GYISGSIL---KELFISYNRISQLSRIDCLSGLLNHSAFISS-----LGSYNEKLSIVFF 134
           G I  S++    E      R+ + +R D L+GL N +              + +L + F 
Sbjct: 276 GEIQLSMIVDVTERHRLQGRLHRQARHDPLTGLPNRTVLAERVTELMAAEPDRRLGLCFI 335

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAA 193
           D+D FK +ND+ GH  GD+++  ++ +L         + R+GG+EF      ++   +  
Sbjct: 336 DLDGFKAVNDSLGHDAGDRLLVAVAGRLTAALPPGQLLVRMGGDEFVVLLADTAGIDDVT 395

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGR 252
             A  +   +   +       S+ I  S G+ ER   +  ++ ++  AD  LY AK +GR
Sbjct: 396 ATARAVLAALA--EPVRVGDQSLSIGASMGLVERPAADGDLADLLRAADITLYQAKDAGR 453

Query: 253 NRVVCFSDIENNT 265
            R   F D E N 
Sbjct: 454 GRWAVF-DAERNA 465


>gi|269966127|ref|ZP_06180217.1| hypothetical protein VMC_16470 [Vibrio alginolyticus 40B]
 gi|269829274|gb|EEZ83518.1| hypothetical protein VMC_16470 [Vibrio alginolyticus 40B]
          Length = 361

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 9/173 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDN 145
           L I   ++  L+  D L+G+ N   F+  + S   +         +   D+D FK +ND 
Sbjct: 184 LHIQIMKMEHLATTDDLTGIPNRREFMRQIESRLNEYRIQGIDFHVAILDLDNFKSLNDR 243

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GDK +    + +         + R+GGEEFA      S Q+A      +R  +E 
Sbjct: 244 FGHDAGDKSLIHAVNTIKSHLLDCDLLARVGGEEFAIVLRSRSSQQALDTLETIRNALET 303

Query: 206 SQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +  S G  +  T S G+ + C   +    ++ RAD ALY AK++GRNRV  
Sbjct: 304 TTVQHS-GCDMSFTASIGVTQVCRLDDSFEPLVKRADLALYKAKETGRNRVEF 355


>gi|289209031|ref|YP_003461097.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
 gi|288944662|gb|ADC72361.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
          Length = 1092

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 11/208 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           I  E  S+  +      L  Y+S  + +  L  S   +  L+  D L+ L N     + L
Sbjct: 616 IFPELQSITAVRDDQGRLTHYVSVFADISRLKASEAELDFLAHHDPLTELPNRRLLRARL 675

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     N  L+I+  D+D FK IND+ GH  GD+++  ++D+L         V RL
Sbjct: 676 AQAIALMRRRNGLLAILIIDVDRFKDINDSRGHAAGDRLLKIVADRLQAGQRGTDTVARL 735

Query: 176 GGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
             +EFA  A   +   +AA++A D+ + +    +++  G    I  + GIA    H    
Sbjct: 736 ASDEFAVLADNLAHVDDAALVAEDILREV-GRPVDLGDGVEFEIAATIGIAVFPDHGADA 794

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDI 261
            T++ +A  AL  AK+ GR     +SD 
Sbjct: 795 ETLLQQAGTALSRAKEDGRGGYRYYSDA 822


>gi|168186556|ref|ZP_02621191.1| sensory box/ggdef family protein [Clostridium botulinum C str.
           Eklund]
 gi|169295477|gb|EDS77610.1| sensory box/ggdef family protein [Clostridium botulinum C str.
           Eklund]
          Length = 821

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 10/184 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           + +  ++  +I  +   D L+GL N   F   +          N + +I+F DID FK +
Sbjct: 376 ILDRKLAEKKIKYMVYNDILTGLPNKFYFEKHIKNIIEEYEKNNGQFAIMFLDIDNFKLV 435

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GHP GD+++   +D++  +      + R+GG+EF         QE     +++   
Sbjct: 436 NDTLGHPKGDELLKKFADRMKTIIYENNLLARVGGDEFLLLIDNIENQEDTSYIDEILLK 495

Query: 203 IENS--QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I  +  +  I       +T+S G A      E +  II  AD A+Y AK SG+N +  FS
Sbjct: 496 INKTLKEPFIIDNKEQFVTVSIGTAFYPSDGENVEIIIKNADTAMYEAKNSGKNNLKFFS 555

Query: 260 DIEN 263
              N
Sbjct: 556 SEAN 559


>gi|146305610|ref|YP_001186075.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas mendocina ymp]
 gi|145573811|gb|ABP83343.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas mendocina ymp]
          Length = 907

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + E  ++  RI +L+  D L+ L N  AFI SL           L ++  DID FK+IN
Sbjct: 454 DVTEAKLAQQRIERLAYTDNLTNLGNRPAFIRSLEERFAHSPRPPLGLLLVDIDNFKRIN 513

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK+++ L+ +L    G    + R    EFA    G  +     +A+ + + +
Sbjct: 514 DSLGHQTGDKLLSALARRLRNSLGAKGTLARFASNEFAILLDGCDQDCGLRVAHQVLQTL 573

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I IT S G+A    H +   T++  A  AL+ AK +G+++V  F++  
Sbjct: 574 DKPLF--VDNQLISITGSLGLALAPEHGDDPQTLMKHAGLALHKAKANGKHQVQLFTEAL 631

Query: 263 NNTC 266
           N   
Sbjct: 632 NAEA 635


>gi|325276663|ref|ZP_08142393.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas sp. TJI-51]
 gi|324098207|gb|EGB96323.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas sp. TJI-51]
          Length = 451

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 11/183 (6%)

Query: 84  YISGSILKELFISYNRISQL-SR--IDCLSGLLNHSAFIS-------SLGSYNEKLSIVF 133
           + S  ++  +     R   L +R   D L+GL NH+  +              + LS   
Sbjct: 266 FRSRHLITTVRNRAARARHLKARMVRDSLTGLYNHTHILQLLEDCSFRARREQQPLSFAM 325

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK+IND  GHP+GD+VI  L+  L        F+GR GGEEFA     ++ + A 
Sbjct: 326 LDIDHFKKINDRHGHPMGDRVIKSLALFLKQRLRKTDFIGRYGGEEFAIVMPNTALEAAH 385

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            + +++R+   +  I  +    +  T SAG+ +        T+   AD+ALY AK +GRN
Sbjct: 386 KVLDEIRRRFADI-IYPAQPQDLQCTFSAGVVQMDEGLDALTMASAADEALYRAKHAGRN 444

Query: 254 RVV 256
            VV
Sbjct: 445 CVV 447


>gi|307132109|ref|YP_003884125.1| hypothetical protein Dda3937_03858 [Dickeya dadantii 3937]
 gi|306529638|gb|ADM99568.1| hypothetical protein Dda3937_03858 [Dickeya dadantii 3937]
          Length = 519

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 11/178 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L  S     QL+  D L+ L N   F   +          + K++++F D+D FKQIND 
Sbjct: 340 LRRSEEHYRQLAHYDSLTSLANGLTFAEQMEQAIQLSRQTHRKIALMFLDLDKFKQINDT 399

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIE 204
           FGH  GD ++   + ++         V R  G+EF     G  E +    +A+ +   + 
Sbjct: 400 FGHATGDLLLKEAAARMRGAVRETDTVYRRSGDEFIILLQGIKEVENTLYVADKIHHAL- 458

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            ++     G  + I+ S GIA    H     T+   AD A+Y AK  GR++   + D+
Sbjct: 459 -NEPFYIEGKKLDISCSIGIALYPEHGTDSLTLAINADAAMYQAKALGRSQTQIYHDL 515


>gi|297623706|ref|YP_003705140.1| diguanylate cyclase/phosphodiesterase [Truepera radiovictrix DSM
           17093]
 gi|297164886|gb|ADI14597.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Truepera radiovictrix DSM 17093]
          Length = 685

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 12/189 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDID 137
           S   + E   +   + + +  D L+GL N   F   L    E+         +++  D D
Sbjct: 247 SSRDISERVAAQAALERSTLYDALTGLPNRVLFHDRLAGAIEREKRRPDNGFAVLSLDFD 306

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA 196
            FK +ND FGH VGD ++  ++++L         V RLGG+EF       +   EA   A
Sbjct: 307 RFKAVNDAFGHGVGDALLGAIAERLRRCVRPSDTVARLGGDEFTLLLTDLADAGEALRAA 366

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             + +  +        G ++ I+ S G+       +    ++  AD A+Y AK  GR   
Sbjct: 367 ERVLRAFQT--PLTVRGHTLKISASIGVTVSATGYDHPEEVLRDADIAMYQAKTQGRAGY 424

Query: 256 VCFSDIENN 264
             FS    +
Sbjct: 425 RLFSPTMRD 433


>gi|294141672|ref|YP_003557650.1| sensory box protein [Shewanella violacea DSS12]
 gi|293328141|dbj|BAJ02872.1| sensory box protein [Shewanella violacea DSS12]
          Length = 1438

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 90/184 (48%), Gaps = 7/184 (3%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQIND 144
            S +         + +L+  D L+ L N S+ + +LG     +   +++  D+D FK+IND
Sbjct: 987  SDISRRKQQEEELRKLTNNDLLTNLPNRSSLMVTLGNLVKRDSHHTLMVLDLDNFKKIND 1046

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
            + GH VGD+++  ++ ++         + RLGG+EFA     +     +AI+AN++ +  
Sbjct: 1047 SLGHQVGDELLIKVAGRIEAAVPYHTSIYRLGGDEFAILVDDNPDIGSSAIIANNVIEAF 1106

Query: 204  ENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDIE 262
              +   ++    + + +S GI      +     ++ +AD A+Y AK +G NR   +S+  
Sbjct: 1107 -VTPFELTLDKVV-VGMSIGIVLYPEDDQNEQALLRKADIAMYHAKSAGGNRYQFYSESL 1164

Query: 263  NNTC 266
            N   
Sbjct: 1165 NRNA 1168


>gi|229056403|ref|ZP_04195816.1| Sensory box/GGDEF [Bacillus cereus AH603]
 gi|228720877|gb|EEL72426.1| Sensory box/GGDEF [Bacillus cereus AH603]
          Length = 569

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++     +     +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDGLTSLPNRLQLITTVNKMIAEKIEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       +  E   LA  +    +   
Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKTHTHDEMRQLATSVLSCFQA-- 252

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 253 PFMLEGHEVYISASLGLCSYPQDGKDVETLLKNSDLAMYSAKEQGRNAACFFTDE 307


>gi|220934288|ref|YP_002513187.1| putative diguanylate phosphodiesterase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995598|gb|ACL72200.1| putative diguanylate phosphodiesterase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 568

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 17/193 (8%)

Query: 82  LGYISGSILKELFISYNR---------ISQLSRIDCLSGLLNHSAFISSLGS------YN 126
           L  +S +I +EL  + NR         I  L+  D L+GL+N   F + L          
Sbjct: 110 LARLSPAIKRELRETRNREAHRRAQQTIEHLAYHDPLTGLVNRREFEARLHQALRTASER 169

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           E+ ++++ D+D FK IND  GH  GD ++  LS  L         + RLGG+EF     G
Sbjct: 170 EQHALLYVDLDQFKIINDTCGHEAGDGMLRQLSVLLRTPIRDSDTLARLGGDEFGVLLSG 229

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALY 245
               EA  +A  +  ++ + +  +    S  I  S G+          S ++  AD A Y
Sbjct: 230 CRLDEAQQVAGRIVDLVRDFR-YVWRDKSFLIGASIGLVMLDDANLRASDVLRMADMACY 288

Query: 246 VAKKSGRNRVVCF 258
            AK  GR RV  +
Sbjct: 289 AAKDRGRGRVHIY 301


>gi|254411172|ref|ZP_05024949.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196181673|gb|EDX76660.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 639

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 14/180 (7%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144
           +L     ++  LSRID L+ L N   F   L    +        L+++  DID+FK  ND
Sbjct: 459 QLEQENQQLKYLSRIDDLTKLANRRDFDDHLAQEWQRLAEEEVPLALILADIDFFKLFND 518

Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            FGH  GD  +  ++  +      +   V R GGEEFA      + ++A  LA  +R+ +
Sbjct: 519 AFGHLTGDFCLEQIAQAIRECVKHSGALVARFGGEEFAIIMPHINGEQAVQLAEQIRERV 578

Query: 204 ENSQINIS----SGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   I+       G S  IT+S G+A       +    ++  AD+AL+ +K+ GR+RV  
Sbjct: 579 KALNISHDPYRMCGYSSIITLSLGVASMIPHPDDDPLKLVQAADEALFESKRQGRDRVTI 638


>gi|218900427|ref|YP_002448838.1| sensory box/GGDEF family protein [Bacillus cereus G9842]
 gi|218543433|gb|ACK95827.1| sensory box/GGDEF family protein [Bacillus cereus G9842]
          Length = 909

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 9/184 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
           Y+    + E      +I+ L+  D L+ L N  AF   L           +  +++F D+
Sbjct: 459 YLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKPFAVMFLDL 518

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK IND  GH VGD ++  ++ +L  +  + M + RL G+EF        ++      
Sbjct: 519 DRFKVINDTLGHRVGDLLLIAVAKRLERISTSNMKLARLAGDEFTILIENYKKKPDVQKM 578

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
            D+     N    I +   + I+ S GIA      E   +I+  AD A+Y AK  G+N  
Sbjct: 579 ADIIVAAMNEPFEIENQH-LQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNGS 637

Query: 256 VCFS 259
             ++
Sbjct: 638 SLYT 641


>gi|166711958|ref|ZP_02243165.1| c-di-GMP phosphodiesterase A [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 728

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 12/184 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           E      R+ QL+  D L+GL N   F +             E  +++F +ID FK IND
Sbjct: 290 EREQIRQRVHQLAFYDTLTGLPNRIMFSARAEQALTQAEYAGEPAALMFINIDRFKLIND 349

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH  GD ++  ++ ++         + RL G+EFA A    S ++A+ +A  +   I 
Sbjct: 350 SQGHAAGDGLLRDIALRINNQLTATAMLARLSGDEFALALPQCSAEQASAVAERVLVSIA 409

Query: 205 NSQINISSGP-SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +    +  G  ++H + S G+A        I+ ++  AD A+  AKK G  R   FS   
Sbjct: 410 S---PLPVGHMTMHPSASIGVAMFPEDGREINILLRHADLAMNRAKKEGGGRFRFFSADM 466

Query: 263 NNTC 266
           N   
Sbjct: 467 NRMA 470


>gi|170020575|ref|YP_001725529.1| diguanylate cyclase [Escherichia coli ATCC 8739]
 gi|169755503|gb|ACA78202.1| diguanylate cyclase [Escherichia coli ATCC 8739]
          Length = 452

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 22/258 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LV 66
            + +WL        F+   + I+  +    F A +  I+ +F+    ++ +Y    I +V
Sbjct: 199 MIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVV 258

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             L++++I +            I   L ++ N    ++  D L+ + N + F + L    
Sbjct: 259 SKLTVMVIFMC----------HIFSALRVTKN----IAHRDPLTNIFNRNYFFNELTVQS 304

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +      ++  DID+FK++ND +GHPVGD+VI  + + +         + R+GGEEF 
Sbjct: 305 ASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFG 364

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYR 239
                   + A  LA  +R+ +E    +         +TIS G +  + +    + I   
Sbjct: 365 VLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRL 424

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK++GRN+VV 
Sbjct: 425 ADNALYEAKETGRNKVVV 442


>gi|117619402|ref|YP_857175.1| GGDEF domain-containing protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560809|gb|ABK37757.1| GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 527

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 5/159 (3%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHP 149
                  I QL+R D L+GL N  + +  L +         ++F D+D FKQ+NDNFGH 
Sbjct: 362 RRQREEEIWQLARRDPLTGLPNRLSLMERLDAQVKGPAPGCLLFCDLDDFKQVNDNFGHS 421

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD ++  L++++    G   F  RL G+EF     G  + +A  +A  +R ++++    
Sbjct: 422 HGDALLCQLAERISRSLGPQHFFARLAGDEFVLLLPGHDQAQADAIAEQIRAVMQS--PF 479

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248
              G  + + IS GI++          + +AD+A+Y  K
Sbjct: 480 EVEGVPLTVGISVGISQYQPGWRAEQWLIQADRAMYHDK 518


>gi|187478625|ref|YP_786649.1| signaling membrane protein [Bordetella avium 197N]
 gi|115423211|emb|CAJ49742.1| putative signaling membrane protein [Bordetella avium 197N]
          Length = 345

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 73/255 (28%), Positives = 123/255 (48%), Gaps = 18/255 (7%)

Query: 9   LSIWLCHEKNLESFSPHT-FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE 67
           ++ W             T F ++  +  S F+ +++ +A    F      F  L +  V 
Sbjct: 96  MASWQIRRARRAGGLDSTIFWVFAFLSCSFFVRSLLTLALPQYFVPQ--AFGSLAFWFVL 153

Query: 68  NLSLVIISITISLLLGYISGS-ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-- 124
            L+LV+  + ++LLL   S + ++  L    +       +D L+GL N  +F   L    
Sbjct: 154 QLALVLTGLILALLLFAASLTNMIARLRDDRD-------VDGLTGLWNRRSFDERLERLI 206

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
               +E  +++  DID+FK IND +GH VGDKV+  +S  +    G+    GR+GGEEFA
Sbjct: 207 ARVASEPHALLLIDIDHFKSINDRYGHAVGDKVLRIVSKLIQGCAGSQALTGRVGGEEFA 266

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                +   EA  LA  L +++  + ++      + IT+S G+      + +S+ + RAD
Sbjct: 267 IVVP-AGLAEAHELARRLNRLLTETLVSDLDEGHV-ITLSTGLTMLQLGDTVSSWMRRAD 324

Query: 242 QALYVAKKSGRNRVV 256
             LY AK+ GRNR+V
Sbjct: 325 TLLYQAKRDGRNRIV 339


>gi|148265482|ref|YP_001232188.1| diguanylate cyclase with PAS/PAC sensor [Geobacter uraniireducens
           Rf4]
 gi|146398982|gb|ABQ27615.1| diguanylate cyclase with PAS/PAC sensor [Geobacter uraniireducens
           Rf4]
          Length = 503

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 11/175 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE----KLSIVFFDIDYFKQ 141
           S   + E   +  ++  LS  D L+GL N + F + LG         +S+V  D+D  K+
Sbjct: 332 SNRDITERKQAEEQLRYLSTHDNLTGLYNRAYFDAELGRLAGGREFPISVVMADVDGLKE 391

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH VGD+++   +  L+  F +   V R+GG+EFA    G+     + +  D+ K
Sbjct: 392 VNDRHGHAVGDRLLQEAAKVLLAAFRSDDVVARIGGDEFAVLLPGAD----SAMVKDILK 447

Query: 202 IIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAK--KSGRN 253
            +E+ Q  ++   S+  +++S G A     E +  ++  AD+ +Y  K  + GR 
Sbjct: 448 RVESCQAGVNRANSVFRLSLSLGTATAETGESLGEVLKLADERMYREKFGRKGRG 502


>gi|118590829|ref|ZP_01548229.1| sensory box/GGDEF domain/EAL domain protein [Stappia aggregata IAM
           12614]
 gi|118436351|gb|EAV42992.1| sensory box/GGDEF domain/EAL domain protein [Stappia aggregata IAM
           12614]
          Length = 387

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 74/267 (27%), Positives = 123/267 (46%), Gaps = 16/267 (5%)

Query: 6   KDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATV-IFIANIFLFYIG-LTPFYGLEY 63
            ++   +L         S  T  IY S  F   I+++ + +A +FL   G L   +GL  
Sbjct: 112 SNYALAYLAANVVFMVLSVATITIYASKPFRGLISSIGLILAFVFLAAEGTLRTVHGLVS 171

Query: 64  ILVENLSL---VIISITISLLLGYIS----GSILKELFISYNRISQLSRIDCLSGLLNHS 116
              +   +   VI+ I +   L +IS     S+     ++ NR  + +R D L+G  N  
Sbjct: 172 GAPQGPGMIDDVIVDIHLMCALVFISLTGAFSLALSFELAANRNREDARRDPLTGAFNRR 231

Query: 117 AFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
            F + L +       +   +V FD+D+FKQ+ND FGH  GD+ +  +  ++         
Sbjct: 232 EFQARLENLLKETPKDDFGLVHFDLDHFKQVNDRFGHVAGDEALVRVCSEVKAHLRQNDC 291

Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
             RLGGEEFA      S + A  +A  LR+ I   +   +     ++T SAG+      +
Sbjct: 292 FARLGGEEFAVLLPSISRENAYRVAERLRERIAGLRFEFAP-REFNLTASAGVYHGNGSK 350

Query: 232 -PISTIIYRADQALYVAKKSGRNRVVC 257
            P + ++   DQ+LY +K++GRNRV  
Sbjct: 351 LPSNELLKTVDQSLYQSKRTGRNRVSI 377


>gi|187478249|ref|YP_786273.1| signaling protein [Bordetella avium 197N]
 gi|115422835|emb|CAJ49363.1| putative signaling protein [Bordetella avium 197N]
          Length = 381

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 70/235 (29%), Positives = 112/235 (47%), Gaps = 15/235 (6%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTP-FYGLEYILVENLSLVIISITISLLLGYI 85
           FM+  ++  +I   T    A ++ ++I  TP      Y  +  LSL ++ I  SL LG I
Sbjct: 152 FMLCLALLATIGHVTR---AVLYTWWIDFTPGLLAPTYWNIVFLSLGVV-IMPSLTLGMI 207

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFK 140
              +L +  +      + +  D L+G+L+  A+  +            ++++  DID+FK
Sbjct: 208 --MMLHDRMLRER--EREANTDFLTGVLSRKAWWGAASRLAAGARGRPIAVLLLDIDHFK 263

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND  GH  GD V+   +            +GRLGGEEF AA  G+S  EA  LA  + 
Sbjct: 264 RVNDRLGHAAGDVVLRHFAAVAGAALRPGDPLGRLGGEEFIAALPGASMDEAQALATRML 323

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +          P +  T S G+      EP+   + RAD+A+Y AKK+GR+RV
Sbjct: 324 AALRAMPCQFGDHP-VGYTFSGGVTVWDGTEPLHNAMERADRAMYQAKKNGRSRV 377


>gi|159897514|ref|YP_001543761.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890553|gb|ABX03633.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 704

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 10/184 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQ 141
             +++L  +   I   +  D L+GL N + FI+ L         +   +++F D+D FK 
Sbjct: 247 RDMRDLDAAEEHIRHQALHDALTGLANRNVFINRLQYILDHYHLHHHHAVLFIDLDRFKI 306

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           IND+ GH VGDK++  +  +L     +   V RLGG+EF     G +   +   + + L 
Sbjct: 307 INDSLGHIVGDKLLIQVGQRLERCIRSHDLVARLGGDEFTILLDGVNDIHDVLRVTDRLL 366

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++   +     G  +    S GI     H +    ++   D A+Y AK  GR     F 
Sbjct: 367 SVVA--EPYHIDGYKVFTAASIGIVVIDDHYKHYHEVLRDVDSAMYRAKSQGRGCRAVFD 424

Query: 260 DIEN 263
           +  +
Sbjct: 425 EEMH 428


>gi|258622540|ref|ZP_05717562.1| sensory box/GGDEF family protein [Vibrio mimicus VM573]
 gi|258585240|gb|EEW09967.1| sensory box/GGDEF family protein [Vibrio mimicus VM573]
          Length = 308

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 90/196 (45%), Gaps = 12/196 (6%)

Query: 73  IISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
           I+  T   ++G I   + + ++     ++ QL+  D L+ L N            +    
Sbjct: 112 ILQKTTGEVIGLIGVSTDITDIVELREQLYQLANTDALTQLCNRRKLWADFRSAFARAKH 171

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
             + LS +  DID FKQIND+FGH  GD+V+ FL+     +       GR+GGEEF    
Sbjct: 172 SKQPLSCISIDIDNFKQINDHFGHDKGDEVLCFLAQLFYELTSEHHICGRVGGEEFIIVL 231

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQA 243
             +    A  LA  +R+               H+ + AG+A  R      + I  R+DQA
Sbjct: 232 EDTPVATAFALAEQIRQRFSQHSFFEQKE---HVYLCAGVATMRLSDHDFTDIYRRSDQA 288

Query: 244 LYVAKKSGRNRVVCFS 259
           LY AK+SGRNR   ++
Sbjct: 289 LYQAKRSGRNRCCIYN 304


>gi|239995359|ref|ZP_04715883.1| diguanylate cyclase [Alteromonas macleodii ATCC 27126]
          Length = 627

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 64/202 (31%), Positives = 97/202 (48%), Gaps = 11/202 (5%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------S 120
           NL L   ++T+  LL  IS     +  +   +   L+ +D L+G+ N  + +       +
Sbjct: 430 NLILTAGALTLFGLLALISYLYAVQRRLKREQ-ETLATVDTLTGVRNRRSLLGAVQLELN 488

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              SY   LS+V  D+D FK+INDN+GH  GD ++    + +          GR GGEEF
Sbjct: 489 EAKSYKNDLSLVLIDLDNFKEINDNYGHECGDDLLKAFCEHVSKCIRKTDTFGRYGGEEF 548

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                 +S  EA  + N +       +I+ +       T SAGIA+       S +I + 
Sbjct: 549 ILCLPKTSAAEAKKVVNSILDSYRKVRISPNISAQ---TFSAGIAQYQTGIETSNLIKQC 605

Query: 241 DQALYVAKKSGRNRVVCFSDIE 262
           D+ALYVAK+ GRNRV  FS  +
Sbjct: 606 DEALYVAKRFGRNRVCIFSQDD 627


>gi|238792322|ref|ZP_04635956.1| Response regulator receiver modulated diguanylate cyclase [Yersinia
           intermedia ATCC 29909]
 gi|238728248|gb|EEQ19768.1| Response regulator receiver modulated diguanylate cyclase [Yersinia
           intermedia ATCC 29909]
          Length = 309

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 11/175 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
           L    + + QL  +D L+ + N   F   L             LS++  D+D+FK+ ND 
Sbjct: 129 LKAQSDLLRQLVYLDGLTEVHNRRYFDKQLDLEWKLSNRNQTPLSMIMIDVDFFKKYNDL 188

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLR-KII 203
           +GH  GD  +  ++  +      P   V R GGEEF      +    A  LA  +R +I+
Sbjct: 189 YGHQGGDDCLRNIAKVIRDALRRPADLVARYGGEEFVCLLPDTELAGAMELAETIRLQIL 248

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVV 256
           E   ++  S     ++IS G+  +          ++ +AD  LY AKK+GRN+  
Sbjct: 249 EQKILHAGSTVYPFVSISLGVCCKETNSTCAPEDLLLQADSQLYQAKKNGRNQTC 303


>gi|15600210|ref|NP_253704.1| hypothetical protein PA5017 [Pseudomonas aeruginosa PAO1]
 gi|254238273|ref|ZP_04931596.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254244099|ref|ZP_04937421.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|9951304|gb|AAG08402.1|AE004914_3 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|126170204|gb|EAZ55715.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126197477|gb|EAZ61540.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 899

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 99/212 (46%), Gaps = 16/212 (7%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNH 115
           P++G        LSL  +   +  L  YI     + +  ++   I +L+  D L+GL N 
Sbjct: 430 PYWG-------QLSLSKVYDDLGELTHYIGIYEDITQNKLAQQHIEKLAYRDNLTGLANR 482

Query: 116 SAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
             FI +L        +  LS++  DID FK+IND+ GH  GDK++  L+ +L    G   
Sbjct: 483 HYFIGALEERLESSGDRPLSLLLVDIDNFKRINDSLGHQTGDKLLVSLARRLRSCLGDGA 542

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-H 229
            + R    EFA     ++ ++   +A  +  +++           I+IT S G+A    H
Sbjct: 543 TLARFASNEFAVLLDDTAVEKGESIAAQVLHMLDKPLF--VDNQLINITGSIGLASAPQH 600

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                T++  A  AL+ AK +G+++V  F++ 
Sbjct: 601 GCDPQTLMKYAGLALHKAKANGKHQVQVFTEA 632


>gi|16329649|ref|NP_440377.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
 gi|1652133|dbj|BAA17057.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
          Length = 315

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 11/182 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDY 138
              +  +L      + +L+++D L+ L N            S         SI+  DIDY
Sbjct: 131 QNRLQHQLESVNQMLERLAKVDQLTQLANRRQLELFLDTEWSEAIREQYPFSILLCDIDY 190

Query: 139 FKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           FK  ND++GH  GD  +  ++  L  VV        R GGEEF      +  Q A  +  
Sbjct: 191 FKNYNDHYGHQGGDDCLQQVAKALTRVVHRPKDLAARYGGEEFLIVLPNTDLQGAIHIGE 250

Query: 198 DLRKIIENSQI-NISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNR 254
           D++  I    I ++ S  + H+T+S G A            ++  ADQ LY AK  GRNR
Sbjct: 251 DIQAEITRLAIPHVQSAIADHVTLSIGCASTIPRLGSDWGKLVGAADQYLYEAKAQGRNR 310

Query: 255 VV 256
           +V
Sbjct: 311 LV 312


>gi|134291280|ref|YP_001115049.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia vietnamiensis
           G4]
 gi|134134469|gb|ABO58794.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia vietnamiensis
           G4]
          Length = 604

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 94/191 (49%), Gaps = 12/191 (6%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLS- 130
           +L  G+++ +  ++   +   + +L+ +D L+ L N   F++        +     +++ 
Sbjct: 417 TLWHGFVTDTTERKRIEA--ELHELATVDHLTQLANRRHFMTQGEAELVRIRRAESRIAA 474

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D+D FK +ND +GH +GD+ +   +  L         VGR+GGEEFAA    S  +
Sbjct: 475 VLMLDLDNFKALNDRWGHALGDRALRHFAGLLRSEARAGDIVGRIGGEEFAAVLPDSGTE 534

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKK 249
           EA      +++    + + +     + +T+S G+         +   + R D+ALY+AK+
Sbjct: 535 EAIAFGLRVQRRAAETPLVLGEQH-VALTVSIGVDRMYATDVGVDQALTRCDKALYLAKE 593

Query: 250 SGRNRVVCFSD 260
            GRNRV  + +
Sbjct: 594 RGRNRVELYRE 604


>gi|167835918|ref|ZP_02462801.1| EAL/GGDEF domain protein [Burkholderia thailandensis MSMB43]
          Length = 772

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVIIS-ITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +Y    N+ L++ S IT+++L  + ++  ++ +L      ++QL+  D L+GL N  A +
Sbjct: 278 DYHHTRNVYLLMTSFITLAMLAFFGVATGLIGKLLGREREMTQLAEFDLLTGLANRYATL 337

Query: 120 SSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            SL       S   +L+I+F D+D FK +ND  GH  GD V+   + +L         + 
Sbjct: 338 RSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVTNEGALA 397

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232
           R+GG+EF     G + E+ A  LA  + ++    +     G S  +  S GIA       
Sbjct: 398 RIGGDEFVVVVKGENVERRAEHLAEAIVRMFA--EPFDVRGSSFVLHASIGIALHSVGNE 455

Query: 233 IS-TIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +AD A+Y AK +G+N    ++
Sbjct: 456 SEIDLLKKADLAMYSAKDAGKNCYQFYA 483


>gi|226945001|ref|YP_002800074.1| Response regulator [Azotobacter vinelandii DJ]
 gi|226719928|gb|ACO79099.1| Response regulator [Azotobacter vinelandii DJ]
          Length = 310

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
            L   +  + ++++ D L+G+ N  AF + L             L+++  D+D+FK  ND
Sbjct: 132 RLARQHELLERMAQCDGLTGIANWRAFDAFLERQWRHQERLRRPLAVLMMDVDHFKAYND 191

Query: 145 NFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
             GH  GD+ +  ++  +       P  V R GGEEFA          A  +   +R+ +
Sbjct: 192 ALGHLNGDRCLRQIARAVADARLRGPGLVARFGGEEFACVLPDIDAGAALHVGERMREAV 251

Query: 204 ENSQINISSGPSI-HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           E  +I   +  +   +T+S G A            ++  AD+ALY AK++GR+RVV 
Sbjct: 252 EALRIPHPASSTAPRVTLSIGGATAIPGPGLDAGALLEMADEALYAAKRAGRDRVVI 308


>gi|288936330|ref|YP_003440389.1| diguanylate cyclase [Klebsiella variicola At-22]
 gi|288891039|gb|ADC59357.1| diguanylate cyclase [Klebsiella variicola At-22]
          Length = 379

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 67/276 (24%), Positives = 124/276 (44%), Gaps = 33/276 (11%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIF---IANIFLFYIGLTPFYGLEYI 64
            L++ LC      S S + F+ ++++ F+  +  ++    +  ++  + G+  F    ++
Sbjct: 107 LLALSLC-----WSLSNYCFIFFWTLPFAWPLLVILMTTGLTALYHHWPGIIAFMLPMWV 161

Query: 65  LV-------------ENLSLVIISITISLLLGYISGSILKELFISYN-------RISQLS 104
                            L+L  I   I L    I      E + ++        R+  ++
Sbjct: 162 TALLAGVQIHYDGEFRFLTLWAIFTAILLYGRRILQRWYDEAWDTHQENMQLIQRLESIA 221

Query: 105 RIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
             D L+G  N  A   F++ L      L+++  D+DYFK+ ND++GH  GD  ++ ++  
Sbjct: 222 NRDALTGTANRRALNAFLAQLWEQKAPLALIMIDVDYFKRYNDHYGHQAGDDCLSSVAQV 281

Query: 162 LVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHIT 219
           L +        V R GGEEF  +  G S   A ++A  +++ I ++ +    S  +  +T
Sbjct: 282 LKMAVRAEDDLVARYGGEEFVVSLPGVSLAHATVIAERIQQKIHDAALPHEASAVAAVVT 341

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S G+       P+ T+I RAD ALY AK  GRN+ 
Sbjct: 342 VSMGVVASDGTVPMETLIARADSALYQAKNKGRNQW 377


>gi|258515730|ref|YP_003191952.1| diguanylate cyclase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779435|gb|ACV63329.1| diguanylate cyclase [Desulfotomaculum acetoxidans DSM 771]
          Length = 381

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 103/230 (44%), Gaps = 25/230 (10%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           ++FI  ++  A  F F   L P   L+ +++ N  +V + +  S+L  Y+          
Sbjct: 164 ALFILLMLLTAVFFNFVGLLNPSLNLKTVVLYNAIIVSLLLICSILFFYLI--------- 214

Query: 96  SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
             +++ +   ID L+GL N   F       +          S+   D+D FK+IND FGH
Sbjct: 215 --DKLRKGVGIDTLTGLWNRQFFHVNLQEELERTNRTGNPTSLAIIDVDNFKKINDTFGH 272

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD  +  +++ L         V R GGEEFA     +  + A  +   +RK +E  + 
Sbjct: 273 LAGDVALKKIANTLRQNVRRIDTVVRWGGEEFAIVFSNADIETAYEVVERIRKSVEAIEF 332

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                    ITIS G++       +  +++ AD+ALY AK++ +N  + F
Sbjct: 333 M------CQITISIGLSSTNLTTNLDELVHVADKALYRAKET-KNTTIIF 375


>gi|27383267|ref|NP_774796.1| hypothetical protein bll8156 [Bradyrhizobium japonicum USDA 110]
 gi|27356441|dbj|BAC53421.1| bll8156 [Bradyrhizobium japonicum USDA 110]
          Length = 828

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 84/185 (45%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
            ++   + E   +  R++ +++ D L+GL N +     +          +EK++++   +
Sbjct: 372 LLALMDITERKRAEARLAFMAQHDGLTGLPNRNLLRQQVDEMLLHTRRSSEKVAVLMLGL 431

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FK +N+  GH VGDK++  ++ +L         + RL  +EFA    G +  ++A +L
Sbjct: 432 DNFKAVNETLGHAVGDKLLRGVAKRLRSTLREEDALARLNSDEFAIVQSGLTRPEDAVML 491

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254
           A  L + I +    +  G S+ I  S GIA      +    ++  AD AL  AK   R  
Sbjct: 492 AKRLLEAIAD--PYLLDGHSVVIGASIGIAMAPADGDDSEKLLKSADMALSRAKLDARGT 549

Query: 255 VVCFS 259
              F 
Sbjct: 550 FAFFE 554


>gi|95928668|ref|ZP_01311415.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95135458|gb|EAT17110.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 284

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 64/256 (25%), Positives = 112/256 (43%), Gaps = 20/256 (7%)

Query: 16  EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIIS 75
            + L   S     ++ S+   +F +     A   LF+     ++ L   ++     + + 
Sbjct: 27  RRRLPYSSCRIAWMFLSVLVCLFFSGYALYA--LLFWNEAQQWHDLVVPVIFFFGAIFV- 83

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128
           +T+ LL    +  + +   + Y  I     +D L G+ N       L S  +K       
Sbjct: 84  LTVCLLSARTADDVTRLCHLEYENI-----LDPLLGIYNRRHMDRCLRSEADKTRRYALD 138

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           LS++  D+D+FK++ND +GH VGD+V+  L+  +         V R GGEE       ++
Sbjct: 139 LSVLLIDVDFFKKVNDTYGHLVGDRVLLALAQMIKGSVRDFDMVFRYGGEEIMVLLPYTN 198

Query: 189 EQEAAILANDLRKIIENSQI--NISSGP--SIHITISAGIAERCHK-EPISTIIYRADQA 243
              A  L + L + +    +   +  G   ++ +TIS G++      E    ++ RAD A
Sbjct: 199 SSGAQTLGSRLCQWVSERSLLEEVHQGQPVNVQVTISIGVSTFDPAVEDEGEMVARADMA 258

Query: 244 LYVAKKSGRNRVVCFS 259
           LY AKK+GRNRV    
Sbjct: 259 LYRAKKNGRNRVEVAD 274


>gi|303240602|ref|ZP_07327117.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Acetivibrio cellulolyticus CD2]
 gi|302591839|gb|EFL61572.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Acetivibrio cellulolyticus CD2]
          Length = 553

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 68/266 (25%), Positives = 117/266 (43%), Gaps = 38/266 (14%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIF--IATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           ++L ++  L+ F     +  +  +F  F  IA +   A   LF +  T            
Sbjct: 99  LFLANQVTLKVFRVRGELSLYMYYFPDFEDIAKITESAPGLLFCLAAT-----------R 147

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125
           ++L++  I    ++GY S    K +     R+  L+ ID ++G+ NH  F + L      
Sbjct: 148 IALIVACI----MVGYTSEQGRKNIK----RLEWLANIDGVTGVFNHRYFQTKLEEEITK 199

Query: 126 ----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                  L ++  D+D FK+ NDN+GH  GD ++A  S+  +   G    V R GG+EF 
Sbjct: 200 ADNSGSTLGMLMIDLDNFKRFNDNYGHKAGDILLAKTSEIFMDQTGDQDIVCRYGGDEFV 259

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-----ITISAGIAERCH-KEPIST 235
                ++ +    +   +RK  +     +++   +      +T+SAG +      E    
Sbjct: 260 ILLPDANSERILTVIEHIRKAFDK----LTNSEEVFAIPDKVTLSAGYSIYPELAESKDD 315

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDI 261
           +I +AD ALY AK  GRN V  + DI
Sbjct: 316 LIMQADSALYRAKNMGRNNVKLYRDI 341


>gi|285017545|ref|YP_003375256.1| two-component system sensor-response regulator hybrid protein
            [Xanthomonas albilineans GPE PC73]
 gi|283472763|emb|CBA15268.1| hypothetical two-component system sensor-response regulator hybrid
            protein [Xanthomonas albilineans]
          Length = 1008

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 79/174 (45%), Gaps = 8/174 (4%)

Query: 91   KELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQIN 143
            +E      +++  +  D L+GL N         A +    + +  L +   DIDYFK+IN
Sbjct: 834  RERDELVRKLAYQAGHDALTGLPNRHTAEPYLTAALEQAMAASTTLCVALLDIDYFKKIN 893

Query: 144  DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            D +GH +GD+V+  + D L V  G   F  R GGEEF     G   ++A    + LR   
Sbjct: 894  DAYGHEIGDEVLRRVGDLLRVALGDNAFAARHGGEEFLLVLPGLDREQALACLDTLRGRF 953

Query: 204  ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
                +    G  +  T S G A           ++ +AD+ LY AK  GR+RV+
Sbjct: 954  AALTLQDEDGCVVQFTASIGFACLSPTLRTRRDLLLQADKHLYQAKHEGRDRVI 1007


>gi|258623475|ref|ZP_05718478.1| extracellular solute-binding protein, family 3/GGDEF domain protein
           [Vibrio mimicus VM573]
 gi|258584290|gb|EEW09036.1| extracellular solute-binding protein, family 3/GGDEF domain protein
           [Vibrio mimicus VM573]
          Length = 463

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 105/204 (51%), Gaps = 7/204 (3%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           P Y +  ++   L +VI+    +L L        ++L  + ++++ LS+ D L+G+ N  
Sbjct: 260 PRYLIPGLVTGTLMVVIL---YALQLRRTVRLRTRQLEEANHKLTLLSQTDSLTGIHNRH 316

Query: 117 AFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            F + L     +++ L+++ FDID FK+IND +GH  GD  I  ++  +       M   
Sbjct: 317 YFFNQLTKERDHSKSLTLMVFDIDDFKRINDTYGHGAGDSAICLITACVRSALEPDMKFA 376

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R+GGEEFA    G + + + +LA  + + I   ++ ISS   + +TIS G A        
Sbjct: 377 RIGGEEFAILVHGKTAEASQLLAELICQRIAEKELMISSNTFVSLTISLGCAFYPSPTES 436

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
            T+ + AD  +Y AK  G+N+VV 
Sbjct: 437 PTL-HMADSLMYEAKGKGKNQVVF 459


>gi|238794768|ref|ZP_04638371.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Yersinia intermedia ATCC 29909]
 gi|238725922|gb|EEQ17473.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Yersinia intermedia ATCC 29909]
          Length = 350

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 105/232 (45%), Gaps = 13/232 (5%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
           Y++ F S+FI   I IA  F   + L   Y    I    +S++++SI       Y   S 
Sbjct: 127 YYTFFLSVFIPQCINIALNFDRLVSLGYLY--RSIFKSLMSIILLSIL------YFIFSR 178

Query: 90  LKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNEKLSIVFFDIDYFKQINDN 145
            ++ F  ++ +   S  D L+ L N         +   +  ++  I   DID+FK++ND+
Sbjct: 179 FQKTFSKFSMLQFQSSTDQLTKLPNRFSINRHLDNFKQTRKDRF-IALIDIDFFKKVNDS 237

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            GH  GDK++  ++ +L  V     F+ R GGEEF      +  + A  +   +   I +
Sbjct: 238 HGHSAGDKILYDIAQELKSVIRGNDFLARYGGEEFLLLIHTADNRIAREILARIITHIRD 297

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +        S++ITIS G A           I  AD+ALY AK  GR+ VV 
Sbjct: 298 TLFITPDNHSLNITISIGAALYVKDTSFDDAIKSADKALYQAKNGGRDEVVF 349


>gi|157374944|ref|YP_001473544.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157317318|gb|ABV36416.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 725

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL     ++  L+  D L+GL N                  +E +++   DID FK IND
Sbjct: 540 ELEKVNKKLQSLAERDELTGLYNRRYAEEKFRATQEFCHRIDEAMALAILDIDNFKDIND 599

Query: 145 NFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
            +GH  GD+ +  ++ ++   F      + R GGEEF       +        N+ R+ I
Sbjct: 600 TYGHQGGDECLRVIASKMKRFFKRDTDVIARYGGEEFLLILPLCNVLMIEEHLNEFRRTI 659

Query: 204 ENSQINISSG-PSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              QI+   G  S+ +T+S G  ++   + + + T    AD  LY AK  GR+RV+ 
Sbjct: 660 RQLQIDNPQGNTSMAVTVSIGAIVSNASYSDALETWFKEADLNLYKAKNQGRDRVIV 716


>gi|153832965|ref|ZP_01985632.1| putative signal transduction protein [Vibrio harveyi HY01]
 gi|148870686|gb|EDL69592.1| putative signal transduction protein [Vibrio harveyi HY01]
          Length = 441

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/161 (34%), Positives = 83/161 (51%), Gaps = 4/161 (2%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +   +  D L+GLLN     + L +  E+    SI  FDID+FK IND +GH +GD V+ 
Sbjct: 280 LQNEAYTDFLTGLLNRRGLENRLYALKEQQVSGSIAVFDIDFFKAINDTYGHEIGDVVLV 339

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
             +            + R GGEEF     G++  EA +    LR+ +  + I I+   +I
Sbjct: 340 QFALLCGAKTDLNFTLSRTGGEEFVLLMPGATRAEAVLFCEALRQEVAATPILINE-LNI 398

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            IT+S G+A     + +   +  AD+ALY AK++GRNRV  
Sbjct: 399 EITVSIGVAHFHSADDVRIALAEADEALYKAKQTGRNRVYV 439


>gi|116053165|ref|YP_793486.1| hypothetical protein PA14_66320 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588386|gb|ABJ14401.1| putative sensory box protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 899

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 99/212 (46%), Gaps = 16/212 (7%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNH 115
           P++G        LSL  +   +  L  YI     + +  ++   I +L+  D L+GL N 
Sbjct: 430 PYWG-------QLSLSKVYDDLGELTHYIGIYEDITQNKLAQQHIEKLAYRDNLTGLANR 482

Query: 116 SAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
             FI +L        +  LS++  DID FK+IND+ GH  GDK++  L+ +L    G   
Sbjct: 483 HYFIGALEERLESSGDRPLSLLLVDIDNFKRINDSLGHQTGDKLLVSLARRLRSCLGDSA 542

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-H 229
            + R    EFA     ++ ++   +A  +  +++           I+IT S G+A    H
Sbjct: 543 TLARFASNEFAVLLDDTAVEKGESIAAQVLHMLDKPLF--VDNQLINITGSIGLASAPQH 600

Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                T++  A  AL+ AK +G+++V  F++ 
Sbjct: 601 GCDPQTLMKYAGLALHKAKANGKHQVQVFTEA 632


>gi|262163927|ref|ZP_06031666.1| C-di-GMP phosphodiesterase A-related protein [Vibrio mimicus VM223]
 gi|262027455|gb|EEY46121.1| C-di-GMP phosphodiesterase A-related protein [Vibrio mimicus VM223]
          Length = 685

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 10/190 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           L     S+ K   ++ ++++QL+  D L+GL N S  +  L        + +   ++ + 
Sbjct: 220 LASTFQSMWKGKELAESKLNQLAYYDSLTGLANRSLLLKKLSDAITTAQNSHTTGTLFYL 279

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK IND+ GH +GD++I  ++ ++           R+GG+EFA      S  +A  
Sbjct: 280 DLDRFKTINDSLGHTIGDQLIKAVALRMEAWTKNDYLSARIGGDEFAVLIPYLSPNKAEE 339

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRN 253
           +A  L  +I N          ++ T+S GI+           ++ +AD ALY AK  GRN
Sbjct: 340 VAKQLLTLISN--PYTIDDHQLYCTVSIGISIFPSVGISNIDVLRQADTALYRAKAGGRN 397

Query: 254 RVVCFSDIEN 263
           + + +     
Sbjct: 398 KFMFYEPEMQ 407


>gi|149182640|ref|ZP_01861109.1| hypothetical protein BSG1_13246 [Bacillus sp. SG-1]
 gi|148849663|gb|EDL63844.1| hypothetical protein BSG1_13246 [Bacillus sp. SG-1]
          Length = 364

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 85/241 (35%), Positives = 116/241 (48%), Gaps = 11/241 (4%)

Query: 24  PHTFMIYFSIFFSIFIATVIFI-ANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL 82
           P   ++  +IF  I   T+I +     L Y+ L  F  L   +VE   ++ I +   +L 
Sbjct: 114 PLVNLVLVNIFIYIRNRTLISVDVKSTLIYVNLMAFAILITKVVELEGIMGIVLFTVVLW 173

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYF 139
           G  S    +  +  YN   QLS  D L+ L NH  F   L      +EK+S+   D+DYF
Sbjct: 174 GLTSS--YRTYYKMYNDFKQLSIKDGLTNLYNHRFFQQKLDELLKSDEKVSLFLLDLDYF 231

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K  ND FGHP GD ++  +SD LV       FV R GGEEFA        ++A  L   +
Sbjct: 232 KIYNDKFGHPQGDTLLREVSDLLVECTPEDAFVCRYGGEEFAVILPEMDIKDAKELGEKV 291

Query: 200 RKIIENSQINISSGPSI-HITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVV 256
           R  I   +   S      HIT+S GI+   H EP+    +I  AD ALY AKK+ RN+VV
Sbjct: 292 RTSIYTKEFFGSEDMPFKHITVSLGISSN-HTEPVPKGKLIKAADLALYEAKKT-RNKVV 349

Query: 257 C 257
            
Sbjct: 350 M 350


>gi|13471756|ref|NP_103323.1| hypothetical protein mlr1828 [Mesorhizobium loti MAFF303099]
 gi|14022500|dbj|BAB49109.1| mlr1828 [Mesorhizobium loti MAFF303099]
          Length = 614

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYF 139
           + ++ + +     +I  L+  D L+GL N      ++         +EKL++   D+D F
Sbjct: 171 AETLERRVEQRTAQIQHLATHDILTGLPNRGLLADTMDEALRSLRDDEKLAVHCVDLDRF 230

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILAND 198
           K +ND  GHP+GD+++  ++ +L    G    V R+GG+EF     L     EA +LA+ 
Sbjct: 231 KPVNDTLGHPIGDQLLGAVAKRLKHHAGETAMVARIGGDEFVILQLLLDGNDEAGVLASR 290

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           +   + +       G  I+I  S GIA      +   T+I  AD ALY AK  GR     
Sbjct: 291 VIHALSDE--FSIQGHKINIGGSIGIAVFPDDGQNSETLIRNADLALYKAKMEGRGTCRS 348

Query: 258 FSDIEN 263
           F    +
Sbjct: 349 FEPGMD 354


>gi|75759399|ref|ZP_00739494.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228899313|ref|ZP_04063576.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222]
 gi|228963723|ref|ZP_04124865.1| Sensory box/GGDEF [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|74493111|gb|EAO56232.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228795959|gb|EEM43425.1| Sensory box/GGDEF [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228860344|gb|EEN04741.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222]
          Length = 569

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 6/174 (3%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGH 148
            L +S +R  +L+  D L+ L N    I+++       ++  +++FD+D FK +ND  GH
Sbjct: 136 RLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLGH 195

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD +++ ++ +L  V G    + RLGG+EF        + + + LA  +    +    
Sbjct: 196 MIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQA--P 253

Query: 209 NISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            +  G  ++I+ S G+         + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 254 FMLEGHEVYISASLGLCSYPQDGLDVETLLKNSDLAMYSAKEQGRNAACFFTDE 307


>gi|320539349|ref|ZP_08039018.1| putative truncated diguanylate cyclase [Serratia symbiotica str.
           Tucson]
 gi|320030474|gb|EFW12484.1| putative truncated diguanylate cyclase [Serratia symbiotica str.
           Tucson]
          Length = 444

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 87/205 (42%), Gaps = 20/205 (9%)

Query: 71  LVIISITISLLLGYISGSILKE--LFISYNRI-------SQLSRIDCLSGLLNHSAFI-- 119
           LVI+ +   +LL  I  S+  E  L  + +++        +L+ ID L+GL N   F   
Sbjct: 237 LVILLVMGLVLLRQIKHSVQTEAELMRTRDQLTTINQMLEELALIDSLTGLANRRQFDIA 296

Query: 120 -----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVG 173
                +        ++++  D+DYFKQ ND +GH  GD+ +  +   L      +   + 
Sbjct: 297 LKNELTRAARNYRSVALLMLDMDYFKQYNDIYGHVAGDQCLQQIGQTLKGLARRSNDIMA 356

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI---AERCHK 230
           R GGEE       +  Q     A  +   +    I     P   +TIS GI       + 
Sbjct: 357 RYGGEEMGIILPDTDAQGVLFFAERIIDAVRELNIPHQGNPHDIVTISIGIYTKVPHRYN 416

Query: 231 EPISTIIYRADQALYVAKKSGRNRV 255
           +   + I  AD ALY AK+ G+N +
Sbjct: 417 DTPISFIDLADHALYQAKRQGKNGI 441


>gi|256023272|ref|ZP_05437137.1| putative diguanylate cyclase [Escherichia sp. 4_1_40B]
          Length = 452

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 22/258 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LV 66
            + +WL        F+   + I+  +    F A +  I+ +F+    ++ +Y    I +V
Sbjct: 199 MIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVV 258

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             L++++I +            I   L ++ N    ++  D L+ + N + F + L    
Sbjct: 259 SKLTVMVIFMC----------HIFSALRVTKN----IAHRDPLTNIFNRNYFFNELTVQS 304

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +      ++  DID+FK++ND +GHPVGD+VI  + + +         + R+GGEEF 
Sbjct: 305 ASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFG 364

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYR 239
                   + A  LA  +R+ +E    +         +TIS G +  + +    + I   
Sbjct: 365 VLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRL 424

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK++GRN+VV 
Sbjct: 425 ADNALYEAKETGRNKVVV 442


>gi|238911908|ref|ZP_04655745.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 664

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 220 AGTDITEERRTQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 279

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 280 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 339

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 340 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSDSLIRTADTAMYNAKEGGRGQFC 394

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 395 VFSPEMNQ 402


>gi|253773945|ref|YP_003036776.1| diguanylate cyclase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161137|ref|YP_003044245.1| putative diguanylate cyclase [Escherichia coli B str. REL606]
 gi|300902798|ref|ZP_07120749.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|301302353|ref|ZP_07208484.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|242376836|emb|CAQ31551.1| diguanylate cyclase [Escherichia coli BL21(DE3)]
 gi|253324989|gb|ACT29591.1| diguanylate cyclase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973038|gb|ACT38709.1| predicted diguanylate cyclase [Escherichia coli B str. REL606]
 gi|253977252|gb|ACT42922.1| predicted diguanylate cyclase [Escherichia coli BL21(DE3)]
 gi|300405148|gb|EFJ88686.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|300842192|gb|EFK69952.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|315258076|gb|EFU38044.1| diguanylate cyclase domain protein [Escherichia coli MS 85-1]
          Length = 452

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 22/258 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LV 66
            + +WL        F+   + I+  +    F A +  I+ +F+    ++ +Y    I +V
Sbjct: 199 MIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVV 258

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             L++++I +            I   L ++ N    ++  D L+ + N + F + L    
Sbjct: 259 SKLTVMVIFMC----------HIFSALRVTKN----IAHRDPLTNIFNRNYFFNELTVQS 304

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +      ++  DID+FK++ND +GHPVGD+VI  + + +         + R+GGEEF 
Sbjct: 305 ASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFG 364

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYR 239
                   + A  LA  +R+ +E    +         +TIS G +  + +    + I   
Sbjct: 365 VLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRL 424

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK++GRN+VV 
Sbjct: 425 ADNALYEAKETGRNKVVV 442


>gi|153007877|ref|YP_001369092.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188]
 gi|151559765|gb|ABS13263.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188]
          Length = 400

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 69/254 (27%), Positives = 115/254 (45%), Gaps = 19/254 (7%)

Query: 12  WLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL 71
           +L  +K +        M +        I T + IA     ++G   F    Y  +E+ +L
Sbjct: 136 YLARQKGIGLGGQIAIMAFLLGIIGHAIETSLNIAA----WVG--EFDQSLYFTIESYAL 189

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------ 125
           V   +  S ++    G I+  +   +  +++++  D L+GL N   F+  L         
Sbjct: 190 V--CVIYSGMIWNF-GFIVMAMNRLHGDMAKVAETDELTGLPNRRHFMKRLARAELAFSE 246

Query: 126 -NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
                S++  DID FKQ ND +GH +GD+ +   +D  V V      + RLGG+EF+   
Sbjct: 247 DGTAYSVMLIDIDNFKQWNDTYGHALGDQALVHFADVAVDVLNRRGVLARLGGDEFSILL 306

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI--IYRADQ 242
               EQEA  +A D+ + I ++ +   +G  + +T+S GIA        S +    RAD 
Sbjct: 307 TKMDEQEATEIARDIVRAINDAPLAF-NGQKLAMTVSIGIASEERDNETSDLDVFARADL 365

Query: 243 ALYVAKKSGRNRVV 256
           ALY  K++GRN   
Sbjct: 366 ALYKVKQAGRNGYA 379


>gi|150017350|ref|YP_001309604.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Clostridium beijerinckii NCIMB 8052]
 gi|149903815|gb|ABR34648.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Clostridium beijerinckii NCIMB 8052]
          Length = 784

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 8/181 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDN 145
           +++   +  ++      D L+ L N    + +L       N   +I+F D+D FK INDN
Sbjct: 342 IQDKIRAEEKLRHFVYYDPLTELPNRKMMLENLNMLLEIKNNSFAILFIDLDGFKSINDN 401

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIE 204
           +GH VGDKV+  ++D L  +      + R+GG+EF        S      +A  ++K ++
Sbjct: 402 YGHQVGDKVLKNVADTLKGIISNVDIISRIGGDEFVIITTDIKSTTYVKEIAERIQKALK 461

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                I +   + +  S GI+    H +   T+I +AD A+Y  KK G      +S   N
Sbjct: 462 I--PFIYNEEDLCVGASIGISIFPEHGKDADTLIRKADVAMYEVKKKGGYDYALYSSKIN 519

Query: 264 N 264
           +
Sbjct: 520 D 520


>gi|325284734|ref|YP_004264197.1| diguanylate cyclase [Deinococcus proteolyticus MRP]
 gi|324316223|gb|ADY27337.1| diguanylate cyclase [Deinococcus proteolyticus MRP]
          Length = 369

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 106/239 (44%), Gaps = 20/239 (8%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLS---------LVIISITISLLLGYISGSILKE 92
           + +   IFL  + L P  GL  +++ N           L+I+++   L++  +    +K 
Sbjct: 128 ISWSRGIFLGLVSLAP-NGLPLVMLPNGMQLLQQVYPPLLILNVAAFLIVALVLRDRIK- 185

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           L        + +R D LSGL N   F   L +      ++  DID+FK+IND +GH VGD
Sbjct: 186 LIKLNAMFQRQARQDALSGLFNRRQFDLDLLALRTGDLLLMVDIDHFKRINDTYGHAVGD 245

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +VI  + + L           R GGEEF             ++A  +R  IE + +++ S
Sbjct: 246 QVITAVGELLRSNLRASDSAYRYGGEEFVLLVHQPQIGTPELIAERIRDHIEQTPLSVPS 305

Query: 213 ---------GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
                      ++H+T S G A           +  ADQALY AK+ GRNR V   + +
Sbjct: 306 LNGLQGDPATFTLHLTASLGGARHMAGTDPQHTLALADQALYQAKQGGRNRWVLHPEPQ 364


>gi|288555553|ref|YP_003427488.1| GGDEFmembrane protein diguanylate cyclase [Bacillus pseudofirmus
           OF4]
 gi|288546713|gb|ADC50596.1| GGDEFmembrane protein, putative diguanylate cyclase [Bacillus
           pseudofirmus OF4]
          Length = 514

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 104/234 (44%), Gaps = 8/234 (3%)

Query: 28  MIYFSIFFSI--FIATVIFIANIF--LFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           M+++SI F +  F+   +F   I   L  + +  F   E     N + +      +  L 
Sbjct: 280 MMFYSIPFVLLTFLLARMFANRIAYPLQQLAMQTFELKENNNTVNETKIPTWYFEAERLN 339

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQ 141
           +   + ++         ++ +  D L+GL N  A I +L +  E+   SI+  DID+FK 
Sbjct: 340 HTFKAYIQNQESQLQSATKEALTDPLTGLANRRALIKTLQALQEQMHFSIILIDIDHFKT 399

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND  GH  GD+ + F ++ +  +       GR GGEEF      +  Q+A  +A  L+ 
Sbjct: 400 VNDTLGHKTGDETLVFFAEAMQRITREKDVCGRFGGEEFMIILPETGTQDAIDVAKRLKD 459

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++++     +G  I  +   G     ++  I   +   D ALY AK  GRN+ 
Sbjct: 460 FLQDTISP--AGRVITFSAGIGFYCDSYEGEIDQFLNLVDAALYKAKDQGRNQY 511


>gi|260596360|ref|YP_003208931.1| hypothetical protein CTU_05680 [Cronobacter turicensis z3032]
 gi|260215537|emb|CBA27720.1| hypothetical protein CTU_05680 [Cronobacter turicensis z3032]
          Length = 595

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 13/193 (6%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GS 124
           V + +    L   ++   L+      + +++ +  D L+GL N      +L        +
Sbjct: 401 VYLELMAETLALALANQKLR------DELTEKAMFDSLTGLRNRYHLEDALHACISQAEA 454

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
               +S +  DIDYFK +ND +GH  GD V+  ++  +  V G    V R GGEEF    
Sbjct: 455 TGSPVSCLMIDIDYFKALNDQYGHDAGDAVLKDVARTIRTVPGDTAQVFRYGGEEFLVLL 514

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
            G ++ +A  LA  +   +    +  +      +++S G+A         +++  AD AL
Sbjct: 515 PGMAQAQAHALATRMLTQVGELSLRYNGQELGPVSVSIGLATWPDHARRESLVKNADIAL 574

Query: 245 YVAKKSGRNRVVC 257
           Y+AK+ GR+R+V 
Sbjct: 575 YLAKEMGRSRIVV 587


>gi|170755524|ref|YP_001780837.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum B1 str. Okra]
 gi|169120736|gb|ACA44572.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum B1 str. Okra]
          Length = 419

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 90/182 (49%), Gaps = 11/182 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
             + E  I  ++  Q++  D L+ L N ++F+  L             L+I+F D+D FK
Sbjct: 240 RDITERKIYNDKTKQMAYFDSLTELPNRNSFLKQLEHEIKLSRKKQNLLAIMFLDLDKFK 299

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
           ++NDNFGH  GDK++  ++ ++     +   + R GG+EF       + E++   LA D+
Sbjct: 300 EVNDNFGHCTGDKLLWQVAKRVKNTISSKDLIARFGGDEFTILIRNIAHEKQVEDLARDI 359

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            ++ +  +     G  ++I  S GI+           +I +AD+A+Y AKK G N+   +
Sbjct: 360 IEVFK--EPICIEGIYVNIKTSIGISFFPKDGHTSQELIKKADKAMYDAKKRGSNKFQIY 417

Query: 259 SD 260
            D
Sbjct: 418 KD 419


>gi|89107874|ref|AP_001654.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           W3110]
 gi|85674818|dbj|BAA35810.2| predicted diguanylate cyclase [Escherichia coli str. K12 substr.
           W3110]
          Length = 452

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 22/258 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LV 66
            + +WL        F+   + I+  +    F A +  I+ +F+    ++ +Y    I +V
Sbjct: 199 MIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVV 258

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             L++++I +            I   L ++ N    ++  D L+ + N + F + L    
Sbjct: 259 SKLTVMVIFMC----------HIFSALRVTKN----IAHRDPLTNIFNRNYFFNELTVQS 304

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +      ++  DID+FK++ND +GHPVGD+VI  + + +         + R+GGEEF 
Sbjct: 305 ASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFG 364

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYR 239
                   + A  LA  +R+ +E    +         +TIS G +  + +    + I   
Sbjct: 365 VLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRL 424

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK++GRN+VV 
Sbjct: 425 ADNALYEAKETGRNKVVV 442


>gi|90020307|ref|YP_526134.1| triosephosphate isomerase [Saccharophagus degradans 2-40]
 gi|89949907|gb|ABD79922.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 855

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 92/178 (51%), Gaps = 8/178 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + +   +  R++ ++  D L+ L N  AF   L         Y+ K++++  D+D+FK 
Sbjct: 408 DVTKEVEAEERLAHIAFTDELTSLPNRLAFSKKLKNTMKLAEKYHGKVAMLIVDLDHFKD 467

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND++GHPVGD +I  +  +L  V     ++ R+GG+EFA         +AA+  +   +
Sbjct: 468 INDSYGHPVGDSLICEVVTRLKEVLVGDEYLARIGGDEFALILDNVRSHDAALHYSRRIQ 527

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            I    I +  GP ++  +S G+A      E    +I  AD A++ AKKSGRN V+ +
Sbjct: 528 KIMAEPIYLMEGPVVNARVSMGVALFPDDGEDAVALIKAADLAMHQAKKSGRNTVLPY 585


>gi|33601603|ref|NP_889163.1| hypothetical protein BB2626 [Bordetella bronchiseptica RB50]
 gi|33576040|emb|CAE33119.1| probable membrane protein [Bordetella bronchiseptica RB50]
          Length = 385

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 111/238 (46%), Gaps = 17/238 (7%)

Query: 31  FSIFFSIFIATVIFIANIF---LFYIGLTPFYGLEYILVENLSLVIISITI--SLLLGYI 85
           +S +F+   ATV  + +     ++ + +    GL    V N++ + I + +  S+ LG I
Sbjct: 149 YSYWFAGVTATVAALGHALRTAVYGLQIEQTQGLLQSSVWNVAFLAIGVLVMPSMTLGMI 208

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDY 138
              ++ +  ++     + +  D L+GLL+  A         +        L+++  DID 
Sbjct: 209 --MMIHDRMLAER--EREANQDFLTGLLSRKAWWREGERLCARALRTGRPLTLLALDIDR 264

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND  GH  GD V+         +  +   +GRLGGEEF A    +       +A  
Sbjct: 265 FKQVNDQHGHAAGDVVLRHFGSLATALLRSGDVIGRLGGEEFVALLPDTDGDTGVSVAER 324

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           L   +  +  +   G ++  T S G+A+    + +  ++ RAD ALY AK++GR+R+ 
Sbjct: 325 LLASVRATPCSH-GGKALTYTFSGGVAQYRAGDTLPVLVERADAALYAAKQAGRDRIR 381


>gi|288961804|ref|YP_003452114.1| diguanylate cyclase/phosphodiesterase [Azospirillum sp. B510]
 gi|288914084|dbj|BAI75570.1| diguanylate cyclase/phosphodiesterase [Azospirillum sp. B510]
          Length = 701

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 82/189 (43%), Gaps = 11/189 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           ++ + + +     ++I   +  D L+ L N       L            K+++ F D++
Sbjct: 253 LTIADISQRKSQEHQIRYQASFDRLTDLPNRWLVCERLEEAIIRAQRGKSKVAVAFLDLN 312

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILA 196
            FKQ+ND  GH  GD+++  ++ ++         VGRLGG+EF   A  ++++ A A L 
Sbjct: 313 RFKQVNDTLGHHAGDELLKLVARRMRNCTRMTDTVGRLGGDEFLIVAPDAADRSAGARLV 372

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             +  +   S+        +    S GIA      +    ++  AD A+Y AK++  ++ 
Sbjct: 373 EKV--LYSMSEPFSVHNQELFCGASIGIAFYPDDGDTADQLLRNADLAMYHAKRNPEHKY 430

Query: 256 VCFSDIENN 264
           V +      
Sbjct: 431 VFYDSGMRE 439


>gi|326315092|ref|YP_004232764.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323371928|gb|ADX44197.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 495

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 98/209 (46%), Gaps = 18/209 (8%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLS 110
           F   ++PF  LE        L  +S+ +S L+  I+  ++    ++   +  +++ D L+
Sbjct: 274 FAPVMSPFLKLEV-------LYAVSVLMSALVSIIAVKVVASRVVT--PLEDVAQKDALT 324

Query: 111 GLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           GL N   F + L    +         S++  D+D FK +ND +GH  GD V+   + ++ 
Sbjct: 325 GLANRRTFEARLQRAEQDLQRSGTGFSVMLMDLDKFKFVNDTYGHDAGDVVLKEAASRIQ 384

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
            +      + RLGG+EFA        Q  + +A  + +++    I +  G +  +  S G
Sbjct: 385 KIIRASDTLARLGGDEFAILVRTDDPQTLSHIATAIVEVVRQ-PIPLKPGLAAEVGTSIG 443

Query: 224 IA-ERCHKEPISTIIYRADQALYVAKKSG 251
           IA    H    + +++ ADQA+Y AK+ G
Sbjct: 444 IAFAPGHSRHGAEVVHCADQAMYTAKRRG 472


>gi|197335116|ref|YP_002156144.1| ggdef domain protein [Vibrio fischeri MJ11]
 gi|197316606|gb|ACH66053.1| ggdef domain protein [Vibrio fischeri MJ11]
          Length = 643

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 9/199 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
           I+  +  L+ I I I+     I  +  KE+     ++  LS  D L+ + N  A    L 
Sbjct: 439 IMFFSGFLLCILIVIA-AFARILMNKNKEINALNLKLHDLSLTDGLTAVPNRRALELHLL 497

Query: 124 SYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              + L   S++  DIDYFK+ ND +GH  GD+ +  ++  L        F+ R GGEEF
Sbjct: 498 ENKQDLTVRSVMMIDIDYFKKYNDTYGHKKGDEALIAVAKALKESCKENDFLTRFGGEEF 557

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHITISAGIAERC----HKEPIST 235
                 +++ E+  +A  ++  I +  I   SS  S  IT+S GI               
Sbjct: 558 IIVMKNTNKAESIQMAEKIQACITSLCIPHESSDVSSFITLSIGITTYSINKEDDSNNEK 617

Query: 236 IIYRADQALYVAKKSGRNR 254
            I  AD+ALY +K +GRN+
Sbjct: 618 AIIEADKALYYSKNNGRNQ 636


>gi|188991217|ref|YP_001903227.1| putative response regulator [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167732977|emb|CAP51173.1| putative response regulator [Xanthomonas campestris pv. campestris]
          Length = 432

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 9/168 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+GL N   F+         L S ++ ++    DID+FK IND +GH  GD
Sbjct: 266 LQDLATRDFLTGLPNRRYFLEQSQRVIPKLLSEDQTVTAAMLDIDHFKHINDTWGHEAGD 325

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  ++  +         V R GGEEF     G     A      LR+ I   ++ I  
Sbjct: 326 QALRAVAASVSGHARPQDLVARFGGEEFCLLVPGLDAANATSYFETLRERISALRVRIGD 385

Query: 213 GPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++ +T+S G+       + +  ++  AD+ LY+AK  GRN+V   S
Sbjct: 386 -ETLSMTVSIGVCIATQRDQSLHHLLGEADKYLYLAKAGGRNQVRLAS 432


>gi|307322047|ref|ZP_07601425.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Sinorhizobium meliloti AK83]
 gi|306892336|gb|EFN23144.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Sinorhizobium meliloti AK83]
          Length = 712

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 92/192 (47%), Gaps = 15/192 (7%)

Query: 83  GYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134
           G++S    + E   +  +I++L+  D L+ L N +A    L            + +++  
Sbjct: 242 GWVSTHEDITEHRNAERQIARLALHDPLTDLPNRAALKQKLDTLLEQHQKQGTQFAVLCL 301

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK++ND FGH VGD+V+   + +L        FV RLGG+EF   A  +    AA 
Sbjct: 302 DLDRFKEVNDLFGHHVGDQVLCLAAKRLCATAV-GAFVARLGGDEFMVLA-EADASYAAQ 359

Query: 195 LANDLRKII-ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
           LA+ +  I+ E+++I    G  I +  S G+A      +  + ++  AD ALY AK  GR
Sbjct: 360 LADLIITILSEDAEI---EGTRIRMGTSLGVAIFPADGDNAAELMGNADAALYRAKADGR 416

Query: 253 NRVVCFSDIENN 264
                F    + 
Sbjct: 417 GTARFFEPQMDK 428


>gi|224826409|ref|ZP_03699511.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
 gi|224601510|gb|EEG07691.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
          Length = 1072

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 19/189 (10%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
            + E       + + +  D L+GL N +     LG         +E+ ++   D+D FK 
Sbjct: 609 DVTEAKRYQEELERQANFDTLTGLPNRNLLQDRLGQGIAVARSKDERFAVALLDLDNFKY 668

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA----- 196
           +ND+ GH +GD ++  ++ ++         V RLGG++F     G    E   LA     
Sbjct: 669 VNDSLGHTLGDALLIEVARRIESSVPALATVSRLGGDDFVLLLPGVKTAEQLDLALKNVT 728

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
           + L + +E       SG  + ++ S G          +  ++  AD A+Y AK  G+++V
Sbjct: 729 DQLNQPVE------LSGTELFLSASIGCCFYPDDGSSVDELLSNADTAMYQAKALGKSQV 782

Query: 256 VCFSDIENN 264
            CF+   N+
Sbjct: 783 RCFALHMND 791


>gi|218246273|ref|YP_002371644.1| PAS/PAC/GAF sensor-containing diguanylate cyclase [Cyanothece sp.
           PCC 8801]
 gi|218166751|gb|ACK65488.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp.
           PCC 8801]
          Length = 625

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 20/215 (9%)

Query: 56  TPFYGLEYIL--VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           +P Y  ++ +  +++ SL I        +      + +EL ++   + QL+ +D L+ + 
Sbjct: 416 SPRYWEDWEIHCLKHFSLYIG-------IALEQEQLYRELRLANEELEQLAFVDSLTEVA 468

Query: 114 NHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV-IAFLSDQLVVV 165
           N   F          L    + LS++  D+D+FK  ND +GHP GD             V
Sbjct: 469 NRRRFDEYLQQEWRRLTRAKQPLSLIVCDVDFFKFYNDTYGHPAGDNCLQQVAQVLQQSV 528

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGI 224
                 V R GGEEFA     +    A  +A ++R  +   ++   +   S ++T+S GI
Sbjct: 529 KRPADLVARHGGEEFAIVLPNTDISGAVHIAGEIRSRLRGLKLEHRASLVSDYVTLSFGI 588

Query: 225 AE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           A      +  + +++  AD ALY AK  GR+R+  
Sbjct: 589 ATTYPTPQTVVESLLMEADLALYQAKGQGRDRIFV 623


>gi|119468621|ref|ZP_01611673.1| putative protein with GGDEF motif and GAF domain [Alteromonadales
           bacterium TW-7]
 gi|119447677|gb|EAW28943.1| putative protein with GGDEF motif and GAF domain [Alteromonadales
           bacterium TW-7]
          Length = 462

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +  ++S+L   D L+ + N   F  ++         Y + +S++  DID+FK+ N
Sbjct: 281 QQLITANQQLSELVNTDGLTNIANRRCFDQTIDDEIQRCVRYQQPISLLICDIDFFKKYN 340

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D++GH  GD+ +  +++ L            R GGEEFA     ++   A   +  ++K 
Sbjct: 341 DSYGHQKGDEALKQVAETLQNLCKRPGDLAARYGGEEFALILPCTNTDNAYCFSILIQKE 400

Query: 203 IENSQINIS-SGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRV 255
           I    I    S  S  +T+S G              II +AD ALY AK++GRN++
Sbjct: 401 IAKLGIEHKYSEVSDMLTLSIGFYSLIPNTKTIAEDIIAKADAALYNAKETGRNKI 456


>gi|241205728|ref|YP_002976824.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240859618|gb|ACS57285.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 694

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 12/206 (5%)

Query: 71  LVIISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEK 128
           LV   + I L+LG  +  I ++    +  R   LS  D L+ L N +AF   L +  N+ 
Sbjct: 219 LVSAVMIIILVLGASTYIIDMQSTQAAVERYRHLSLHDPLTNLANRAAFNEHLSALVNKP 278

Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                 ++++ FD+D FK+IND  GH  GD V+  ++++L  +     FV R+GG+EF A
Sbjct: 279 KDMTANIAVLSFDLDRFKEINDVHGHAAGDAVLRAVAERLSKIMLNGQFVARVGGDEFVA 338

Query: 183 AALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRA 240
                    +A  LA  +   I   +    +G ++ +  S GI+      + +  ++ +A
Sbjct: 339 VMCDYFVRSDAKGLAQRMLDEIA--RPIEWNGHALTVGSSIGISTYPGQADTLDDLLSQA 396

Query: 241 DQALYVAKKSGRNRVVCFSDIENNTC 266
           D A+Y AK +  N +  +    +   
Sbjct: 397 DIAMYRAKSTATNSICFYEPSMDQAA 422


>gi|148979753|ref|ZP_01815690.1| sensory box/GGDEF family protein [Vibrionales bacterium SWAT-3]
 gi|145961636|gb|EDK26935.1| sensory box/GGDEF family protein [Vibrionales bacterium SWAT-3]
          Length = 583

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 18/189 (9%)

Query: 84  YISGSILKELFISYNRIS-------QLSRIDCLSGLLNHSAFISSLGSYNE-------KL 129
            I    + E +++  ++        +LS +D L+ + N   F   L +           L
Sbjct: 386 LIMARDITERYLAEQKLEEANLELERLSFMDSLTQVSNRRRFDEQLSTLWHYHVREKLPL 445

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSS 188
           +I+  DID+FK  ND +GH  GD  +  +S     V   +   V R GGEEF      ++
Sbjct: 446 TIMLCDIDFFKGYNDYYGHQQGDDALIQVSQAFKKVLNRSSDCVARYGGEEFGFILPNTT 505

Query: 189 EQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALY 245
              A ++A  +  ++++   I+  S  S  IT+S G+       ++ + + +  AD ALY
Sbjct: 506 ADGALMVAQRIHDEVLKLGLIHEKSTVSEFITVSIGVISYVPTTEDEMESAVALADSALY 565

Query: 246 VAKKSGRNR 254
            AK  GRNR
Sbjct: 566 QAKSDGRNR 574


>gi|157370654|ref|YP_001478643.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Serratia proteamaculans 568]
 gi|157322418|gb|ABV41515.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Serratia proteamaculans 568]
          Length = 697

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 82/189 (43%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYF 139
              +    I+  R+   S  D L+GL N   F   L          N+ L ++  D+D+F
Sbjct: 247 SRDVSSQRIAEKRLLIASEYDELTGLPNRRLFKKRLKQEMKRSRANNKSLGLILLDLDHF 306

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K +ND  GH  GD ++  L+ +L        FV RLGG+EFA       +EQ+   +AN+
Sbjct: 307 KLVNDTLGHDAGDHLLRVLARRLKADLNANSFVSRLGGDEFAVVISDVENEQDIFKIANN 366

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
              +++        G ++H  +S G A         S ++  AD ALY  K  GR  V  
Sbjct: 367 F--LLQLETPITHGGKALHCGMSIGGALYPQDARDASELMKCADTALYELKDGGRGGVYM 424

Query: 258 FSDIENNTC 266
           F+    +  
Sbjct: 425 FNPQMMDKA 433


>gi|332527195|ref|ZP_08403267.1| GGDEF domain-containing protein [Rubrivivax benzoatilyticus JA2]
 gi|332111619|gb|EGJ11600.1| GGDEF domain-containing protein [Rubrivivax benzoatilyticus JA2]
          Length = 390

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 60/228 (26%), Positives = 93/228 (40%), Gaps = 8/228 (3%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
            +A V     I   +  L P   ++      +  ++       LLG   G +L     + 
Sbjct: 154 MLALVAATLLIRCVHAVLQPSAYVDMTQPNPVQTLVAVAAYVALLGAGFGFVLACTERAS 213

Query: 98  NRISQLSRIDCLSGLLNHSA----FISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPV 150
             + +L+  D L+G LN  A       +L         ++ V  D+D FKQ+ND  GH  
Sbjct: 214 RSLERLASHDHLTGALNRQAAEPLLAQALRRARRGGGCVAFVLIDLDRFKQVNDRHGHVF 273

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+   +  +         + RLGGEEFA     S    A  +   LR       ++ 
Sbjct: 274 GDEVLRRFAQTVRTRLRASDLLVRLGGEEFALVLPDSDAAGARRVLEQLRGDCREMGLHT 333

Query: 211 SSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
            +G +  ++ SAGIA           +   AD ALY AK+ GR+R V 
Sbjct: 334 EAGQACPVSFSAGIALSPQGRVDGEALYRAADGALYAAKRGGRDRAVL 381


>gi|325845181|ref|ZP_08168489.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sp. HGF1]
 gi|325488777|gb|EGC91178.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sp. HGF1]
          Length = 678

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 61/193 (31%), Positives = 98/193 (50%), Gaps = 8/193 (4%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIV 132
           +S+L  YI+ ++  E    Y + + L+R D L+GL N    +          +N++  ++
Sbjct: 484 LSILASYIAIAL--ENAKLYKKANYLARYDGLTGLNNRVQVLKKGEQMLKSAHNDRCCVL 541

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK+IND FGH VGD+VI  +   L     + + +GR GGEEF     G +E +A
Sbjct: 542 MLDIDHFKKINDTFGHLVGDEVIQKVGLLLTKKVNSNIHIGRYGGEEFVIFLQGYTESKA 601

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSG 251
            + A  +R+ +    +         IT S G+ E           I+ AD A+Y +K +G
Sbjct: 602 LVFAEKIREELLTLSVKRIKEHFPSITASFGVYEYEQGSLSAEEGIHFADLAMYYSKTTG 661

Query: 252 RNRVVCFSDIENN 264
           RN+V  +S +EN 
Sbjct: 662 RNKVTPYSMLENK 674


>gi|209525497|ref|ZP_03274036.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira maxima CS-328]
 gi|209493996|gb|EDZ94312.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira maxima CS-328]
          Length = 598

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 114/273 (41%), Gaps = 17/273 (6%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI 64
           + D     +C++   +  +    +I+ S    IF     F +   + YI     +    I
Sbjct: 65  MPDIDGYTVCNQLKSDPNTAEVPIIFLSALDDIFDKVKAFESG-GVDYISKPFQFQEVLI 123

Query: 65  LVEN-LSLVIISITISLLLGYISGSIL---KELFISYNRISQLSRIDCLSGLLNHSAFIS 120
            V+N L+L      + +L   +   +    KEL I+ +++  ++  D L+ L N + F+ 
Sbjct: 124 RVKNQLTLRRTQQQLQILNTQLEARVEQRTKELEIANSKLRDMAFRDELTNLPNRALFLE 183

Query: 121 SLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
            L           N +  ++  D D FK IN++ GH VGD+++  +S +L  +      +
Sbjct: 184 RLADGIDIKQQYPNYQFVVLLLDCDRFKMINESLGHSVGDQLLVAISKRLKSLLKPEDTL 243

Query: 173 GRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHK 230
            RLGG+EFA          EA  +A  +      S   +     + I +S GI+      
Sbjct: 244 ARLGGDEFAIMVNKIEDMAEAKTIAQKVIDSF--SHPFVLPNQEVFINVSIGISLSHLDY 301

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +    I+  AD A+Y AK  G+ +   F    +
Sbjct: 302 QKPEHILRDADTAMYRAKDLGKGQYHIFDPSMH 334


>gi|119487258|ref|ZP_01621009.1| hypothetical protein L8106_21077 [Lyngbya sp. PCC 8106]
 gi|119455813|gb|EAW36948.1| hypothetical protein L8106_21077 [Lyngbya sp. PCC 8106]
          Length = 1177

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 14/188 (7%)

Query: 84  YISGSIL--KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVF 133
           Y  GSI+    L  +  ++   +  D L+ L N S FI  L     +         +++F
Sbjct: 725 YYEGSIIDITNLKKTEEKLRYSASHDALTNLWNRSFFIERLKKSITRLHKQSNYLFAVLF 784

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEA 192
            D+D FK IND  GH +GD ++  +S +L +   +   + RLGG+EF       S+  EA
Sbjct: 785 LDLDGFKIINDCLGHGMGDLLLIEISKRLKISLHSGNILCRLGGDEFTILLENISDINEA 844

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSG 251
             +A+ + KI+  ++     G  + I  S GI +   +  +   I+  AD A+Y AKK G
Sbjct: 845 QEIASRVLKIL--NKPFTLKGHQVFIGTSIGIVKGTREYHLPPEILRDADTAMYRAKKKG 902

Query: 252 RNRVVCFS 259
           +   V F 
Sbjct: 903 KGCAVLFD 910


>gi|157369976|ref|YP_001477965.1| diguanylate cyclase [Serratia proteamaculans 568]
 gi|157321740|gb|ABV40837.1| diguanylate cyclase [Serratia proteamaculans 568]
          Length = 568

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 69/275 (25%), Positives = 119/275 (43%), Gaps = 18/275 (6%)

Query: 1   MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFI--ATVIFIANIF--------- 49
             RS +  + I     K   S +    MI      ++FI   T+++ +NI          
Sbjct: 291 FQRSFE--MEIAASQHKIYNSQTAIYGMISLGGLIALFIFLPTLVYCSNISRWLTKTHNN 348

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG--SILKELFISYNRISQLSRID 107
           +F +       +   +     L+ IS  I  L  Y     ++  E  +    +   S +D
Sbjct: 349 IFRLSRGNMNIVPNEVFYGQELMAISDAIKQLKQYQLEKVTLENEKHLLIKELEASSFLD 408

Query: 108 CLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
            L+ + N   F     SL + +  L+    DID FK +NDN+GH +GD+V+      L  
Sbjct: 409 PLTNIYNRRKFFRECESLAASSYPLAFCLIDIDNFKNLNDNYGHHIGDQVLVAFGKLLQS 468

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
            F +     R GGEEFA      + + A  + + LR+      + ++ G  +  T S GI
Sbjct: 469 TFRSSDIFCRYGGEEFAVILGNCTLENAREVISKLRERTHQFTLTLADGQKVRFTTSCGI 528

Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           A+      + T I +AD+ALY +K +G++R+  ++
Sbjct: 529 AQVSDIRLLPTAIKQADEALYFSKNNGKDRIGIYT 563


>gi|90020311|ref|YP_526138.1| response regulator receiver modulated diguanylate cyclase
           [Saccharophagus degradans 2-40]
 gi|89949911|gb|ABD79926.1| response regulator receiver modulated diguanylate cyclase
           [Saccharophagus degradans 2-40]
          Length = 307

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 78/176 (44%), Gaps = 12/176 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           E       +   +  D L+GLLN SAFI  L         Y    ++   D+D FKQ+ND
Sbjct: 126 ERHSLVKELHHRAITDYLTGLLNRSAFIERLDHELAHAERYKHMFAVASIDLDNFKQVND 185

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILANDLRKI 202
             GH VGDKV+      L           R GG+EF      L S +    I+A   +++
Sbjct: 186 TLGHGVGDKVLIEFGQILEKCTRRSDTPARFGGDEFVVLLTRLESVDDALDIVAKKHQEL 245

Query: 203 IENSQINISS--GPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
           I      + S  G  + + +S G+A        +  ++  AD+ALY +K++G+N  
Sbjct: 246 IAALDEYVISQVGDKVDLGLSIGVAVYPSDGTSVDQLLIAADKALYKSKRAGKNTF 301


>gi|304409422|ref|ZP_07391042.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|307303780|ref|ZP_07583533.1| diguanylate cyclase [Shewanella baltica BA175]
 gi|304351940|gb|EFM16338.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|306912678|gb|EFN43101.1| diguanylate cyclase [Shewanella baltica BA175]
          Length = 581

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 61/200 (30%), Positives = 97/200 (48%), Gaps = 11/200 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSL 122
            L+ ++I +  L  +  G +L    +   +  +++R+D L+G+LN  A            
Sbjct: 366 MLMFVTILVGGL--FFLGILLAVGQMQKRKFMRMARMDALTGILNRGAGQELGENLFVQA 423

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
            +      ++ FD+D+FK+IND+FGH  GD  +  + D L           R+GGEEFA 
Sbjct: 424 TARGGDFCVILFDLDFFKRINDSFGHGSGDWALKKVVDSLKSHIRNGDVFARIGGEEFAI 483

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRAD 241
               + E++   +A   R  IE      S G    IT S G++     +  +  + +RAD
Sbjct: 484 LLPYADEEKGMEVAEQCRARIEAIDTQHS-GHKFVITASFGVSGLMADDLSLDPLFHRAD 542

Query: 242 QALYVAKKSGRNRVVCFSDI 261
            ALY AK +GRN VV +SDI
Sbjct: 543 MALYAAKANGRNAVVRYSDI 562


>gi|285018815|ref|YP_003376526.1| sensor protein [Xanthomonas albilineans GPE PC73]
 gi|283474033|emb|CBA16534.1| hypothetical sensor protein [Xanthomonas albilineans]
          Length = 374

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 63/216 (29%), Positives = 96/216 (44%), Gaps = 19/216 (8%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLG---YISGSILK---ELFISYNRISQLSRIDC 108
           +     L   +++ + L   S  +SL L    +    +L+    L      + + +R D 
Sbjct: 163 VAALQALSRQVMQLIELRRTSHALSLQLREREWYEQQLLRYQSSLETLNADLLEQARTDP 222

Query: 109 LSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GLLN  A+       + S       LS+   D+DYFK IND  GH  GD+V+  L+  
Sbjct: 223 LTGLLNRRAYATALMVEVESAQVNAAALSVAILDLDYFKSINDLHGHDKGDEVLLALAQM 282

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           L V       V R GGEEFA        ++A      LR+     ++       + +T S
Sbjct: 283 LRVHAPPDCLVARYGGEEFAILLPWMQTEQAVHTCEMLREETGLLRL------GVPLTAS 336

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            G+A     E    ++ RADQALY AK++GR+ V  
Sbjct: 337 IGVATLRAPESAEQLLKRADQALYQAKRAGRDCVCL 372


>gi|229513927|ref|ZP_04403389.1| GGDEF family protein [Vibrio cholerae TMA 21]
 gi|229349108|gb|EEO14065.1| GGDEF family protein [Vibrio cholerae TMA 21]
          Length = 505

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 107/241 (44%), Gaps = 16/241 (6%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS----LVIISITISLLLGYISGS 88
           I   +F + V+++ N+++    + P      +L +  +    +   S  ISL +   + +
Sbjct: 261 ILALLFFSLVMYLVNLWVVIALIKPITTASQVLQQFKTSGGKMPDASTFISLEMKEFATT 320

Query: 89  ILK---ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           I +   +L  S   +   S  D L+ + N       L SY        L +   DID+FK
Sbjct: 321 INRIVGQLEDSQQVLRWQSEHDPLTRISNRRHLEKQLKSYLSDRPQAYLVLFLVDIDFFK 380

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199
           + ND+FGH  GD+ +  ++D L  V       V R GGEEF    +     +A   A  +
Sbjct: 381 RFNDSFGHLAGDEALCSVADVLQSVEFHGEKIVARFGGEEFCVVLVSDCAFDAEQYAQQM 440

Query: 200 RKIIENSQI-NISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R  IE   I N       ++T+S G   A     E   ++ ++AD ALY AK+ GR+R V
Sbjct: 441 RSKIEQLAIANPVDALCQYLTVSIGGVYAISPKMESYLSLFHQADMALYHAKEHGRDRYV 500

Query: 257 C 257
            
Sbjct: 501 V 501


>gi|256823494|ref|YP_003147457.1| diguanylate cyclase [Kangiella koreensis DSM 16069]
 gi|256797033|gb|ACV27689.1| diguanylate cyclase [Kangiella koreensis DSM 16069]
          Length = 700

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 11/179 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
            +   EL     R+ ++S  D L+ + N   F ++              L+    DID+F
Sbjct: 518 AAKTSELIAMNERLEKMSVEDELTKIYNRRGFEAAANEAFKLACRNRTALTFAMLDIDHF 577

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           K++ND +GH VGD+ I  ++ +L  VF     F  R GGEEF     G +  +   +   
Sbjct: 578 KRVNDTWGHVVGDECIVMVAKELKKVFLRETDFYARYGGEEFVVLLTGGNTDKHCRMLEQ 637

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255
           LRK IEN ++ +  G +I +T+S G+        IS   ++ +AD+ LY +K  GRNR+
Sbjct: 638 LRKDIENHKVAV-DGENISLTVSIGVFSLKEDFNISYHQLVSKADKLLYQSKTEGRNRI 695


>gi|146279681|ref|YP_001169839.1| hypothetical protein Rsph17025_3666 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557922|gb|ABP72534.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 733

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 11/183 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           + L  S      L+  D L+G+ N + F   L             ++++  D+D FK IN
Sbjct: 293 RRLHQSEEEARYLAMHDPLAGIPNRTLFEDRLDQALKAEKRGGPPVALLCLDLDRFKAIN 352

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKI 202
           D  GHP GD++I  ++ +L         V RLGG+EF    +G  SE+  A   + L  +
Sbjct: 353 DTLGHPAGDELIRQMAGRLCSHVRETDTVARLGGDEFGVILIGMGSEETLARYCSGLIHL 412

Query: 203 IENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           + ++  ++ +G  + I+ S G A        +  ++  AD ALY AK  GR R    +  
Sbjct: 413 L-SAPCDLKTGQ-VQISASIGAACAARFDGGMEALMQSADAALYRAKADGRGRFCIATPE 470

Query: 262 ENN 264
            N+
Sbjct: 471 MND 473


>gi|116694067|ref|YP_728278.1| signal transduction protein [Ralstonia eutropha H16]
 gi|113528566|emb|CAJ94913.1| signal transduction protein containin a GGDEF domain [Ralstonia
           eutropha H16]
          Length = 663

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 11/183 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
           +I    + +  +   R++++SR D L+ L+N SAF   L         +   +++++ D+
Sbjct: 471 HIHVQDITQRKLETQRLARMSRTDHLTQLMNRSAFEGQLHAAMVRSREHGTLMALLYLDM 530

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAIL 195
           D FK +ND  GH  GD+++   + ++         V RLGG+EFA      ++   A  +
Sbjct: 531 DRFKAVNDIHGHAAGDQLLQTFAQRVRRCVRERDTVARLGGDEFAVVLEDMTQPAAARRV 590

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNR 254
           A  + + ++  +     G S  + +S G+A           ++  AD  LY AK +GR R
Sbjct: 591 AQAILQAMD--EPFDFEGVSADVDVSIGVALYHGGPAQDRELMRLADVLLYRAKGAGRGR 648

Query: 255 VVC 257
              
Sbjct: 649 YEI 651


>gi|120610722|ref|YP_970400.1| PAS/PAC sensor-containing diguanylate cyclase [Acidovorax citrulli
           AAC00-1]
 gi|120589186|gb|ABM32626.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax citrulli
           AAC00-1]
          Length = 442

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 89/187 (47%), Gaps = 16/187 (8%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129
           +I  L+  IS  I     I+  +   L+  D L+GL N SAF       ++ + S    +
Sbjct: 256 SIMSLVQDISAKI----EIARQQ-HYLANHDSLTGLQNRSAFQSRFEHSLARVRSRGGAV 310

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSS 188
           +++F D+D FK+IND  GH VGD+V+  ++ +L         V RLGG+EF      G  
Sbjct: 311 ALLFIDLDGFKKINDGHGHKVGDEVLRCVARRLAHAVRGSDTVARLGGDEFLVMLDTGVE 370

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVA 247
                 +   +   +   +     G ++ +  S G+A     E  I  ++ +ADQA+Y A
Sbjct: 371 ADLVGHIGARIISALA--EPMEVDGHAVRVGASIGVAMHPPLEGDIELLMTQADQAMYAA 428

Query: 248 KKSGRNR 254
           K++GR  
Sbjct: 429 KRTGRGC 435


>gi|74317283|ref|YP_315023.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Thiobacillus denitrificans ATCC 25259]
 gi|74056778|gb|AAZ97218.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) [Thiobacillus denitrificans ATCC 25259]
          Length = 758

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 11/178 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           +++   +   +++L+  D L+ L N  AF       + +L     +L+++F D+D  K +
Sbjct: 302 VEQREQAQRHLNRLAYFDGLTRLPNREAFRLTLSQALRTLNGSGGRLALLFVDVDRLKNV 361

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRK 201
           ND  GH  GD ++  ++ +L  V      + R GG+EF           +A  +A   R 
Sbjct: 362 NDGLGHRAGDMLLQQIAGRLQSVLRGHDHLSRFGGDEFVVIVSEIVRDTDAERVAG--RL 419

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           +   +      G  ++   S GIA      E +  ++  AD A+Y AK+ G NR V +
Sbjct: 420 LAALAAPVDIGGTQVYTGASIGIALYPEDAESLDGLLKHADTAMYQAKEQGGNRYVFY 477


>gi|83591442|ref|YP_425194.1| diguanylate cyclase [Rhodospirillum rubrum ATCC 11170]
 gi|83574356|gb|ABC20907.1| Putative diguanylate cyclase (GGDEF domain) [Rhodospirillum rubrum
           ATCC 11170]
          Length = 278

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 10/182 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           S  I  +    Y+ +  L+R+D L+ + N     S+L             LS+   D+D 
Sbjct: 97  SDEIDTQWLSRYSEVEALARLDPLTSIANRRMLDSALEQEWTRSLRSGSPLSVAMCDLDL 156

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           FK  ND +GH  GD+V+   ++ L       P    R+GGEEF      +    A  +A 
Sbjct: 157 FKAYNDRYGHNRGDQVLIAFAEILRGCSRRPPDLPARVGGEEFLILFPETDLAGARQVAE 216

Query: 198 DLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            +R  +    I  +  P   +T+S G+A      +   + +I +AD  LY AK   RN V
Sbjct: 217 AIRLALWTLAIPHADSPHGRVTVSIGLACVFPRPEGDPADLIAQADFRLYEAKAHNRNTV 276

Query: 256 VC 257
             
Sbjct: 277 RA 278


>gi|299068826|emb|CBJ40067.1| putative signal transduction ggdef domain transmembrane protein
           [Ralstonia solanacearum CMR15]
          Length = 478

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 20/223 (8%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           + +++A      +I+  +       GL         LV +   +++ L Y     L++  
Sbjct: 265 YPLYVAVGAATEDIYANWTSRAWAIGL---------LVAVFNLVTMALAYQFAKQLEKRL 315

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFG 147
            +  R ++ +  D L+GL N  A  + L    +        +S++  D+D FK  ND++G
Sbjct: 316 AAGRRHAEQAITDALTGLPNRRALDAFLDKEWKRALRERWPVSVLMIDVDAFKAYNDHYG 375

Query: 148 HPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  GD  +  ++  +      +     R GGEEF      +  + A  +A  +R+ +   
Sbjct: 376 HLGGDTALKAVARCIQARASRSGDLAARYGGEEFCIVLPHTDLEGAIAVAEHIRQAVLAL 435

Query: 207 QINISSGPSIHITISAGIAERCH---KEPISTIIYRADQALYV 246
            I  + GP+  +++S G+A        E   T+   AD  LY 
Sbjct: 436 HIPHAQGPAGVLSVSIGVATDTPALSGERAETLTQAADTQLYQ 478


>gi|319763232|ref|YP_004127169.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|330825426|ref|YP_004388729.1| diguanylate cyclase [Alicycliphilus denitrificans K601]
 gi|317117793|gb|ADV00282.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|329310798|gb|AEB85213.1| diguanylate cyclase [Alicycliphilus denitrificans K601]
          Length = 257

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 81/165 (49%), Gaps = 9/165 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGD 152
           + +LS  D L+GL N       L    ++++       ++  DID+FKQ+ND  GH  GD
Sbjct: 50  LCELSLKDPLTGLPNRRHVHGVLERELDRVARSGEAALLLMLDIDHFKQVNDCHGHLAGD 109

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+  ++  L         V R GGEEFA            ++A  +R+ IE++ + +S 
Sbjct: 110 IVLQSVARTLESCVRPMDTVSRYGGEEFAIVLPACQFGFGRVVAERVRRAIESTPVYVSP 169

Query: 213 GPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255
             ++++T+S G A      +   +    RAD  LY AK SGRNRV
Sbjct: 170 SLTLNVTVSIGGAFALQWIRSTTALWTDRADAELYKAKLSGRNRV 214


>gi|146311663|ref|YP_001176737.1| diguanylate cyclase [Enterobacter sp. 638]
 gi|145318539|gb|ABP60686.1| diguanylate cyclase [Enterobacter sp. 638]
          Length = 351

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 122/260 (46%), Gaps = 16/260 (6%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
             I +     L S    T ++   +    F+        + + ++      G+  ++  +
Sbjct: 92  FWIAMMAVNPLPSVVIATILLADRLSAGGFVLMRKAAVAMLVVFLAAWLMQGMAVVMTVS 151

Query: 69  -----LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-- 121
                 +L +I+I I + L  ++ SI   L +    + +++ +D L  + N         
Sbjct: 152 QQTMFATLPLIAIYI-IALSVMTDSIAIRLRVKSRELERIAMMDPLLDIANRRLLEKRIE 210

Query: 122 -----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                L   + + +++F DID FK++ND FGH VGD ++A +S+ L +         RLG
Sbjct: 211 KELKTLQQASRESALMFIDIDNFKEVNDRFGHKVGDTLLATVSEILHLATRQTDTPARLG 270

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPIST 235
           G+EF      +S +EA ++A+ + +    + ++  +  +++ T+S GIA    + E ++ 
Sbjct: 271 GDEFVILLPNTSIEEAHVVASRIMEA--AAVMDDVAEEAVNCTLSIGIAGATREMENVTD 328

Query: 236 IIYRADQALYVAKKSGRNRV 255
            +  AD ALY AK+ G+NR+
Sbjct: 329 WLQAADTALYQAKRGGKNRI 348


>gi|77456688|ref|YP_346193.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas fluorescens Pf0-1]
 gi|77380691|gb|ABA72204.1| conserved GGDEF/EAL domain protein [Pseudomonas fluorescens Pf0-1]
          Length = 898

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + +  ++  RI +L+  D L+ L N  AFI +L        +  +S++  DID FK+IN
Sbjct: 454 DITQTKLAQQRIERLAYTDNLTNLGNRPAFIRNLDERFARDSDTPISLLLVDIDNFKRIN 513

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++  L+ +L         + R    EFA     +       +AN L   +
Sbjct: 514 DSLGHQTGDKLLISLARRLRNSLSPSGSLARFASNEFAVLLDDTDLATGQQIANQLLATL 573

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I +T S G+A    H     T++  A  AL+ AK +G+++V  F++  
Sbjct: 574 DKPMF--VDNQLISVTGSVGLACAPLHGRDPQTLMRNAGLALHKAKANGKHQVQVFTEAL 631

Query: 263 NNTC 266
           N   
Sbjct: 632 NAEA 635


>gi|83592988|ref|YP_426740.1| guanylate cyclase [Rhodospirillum rubrum ATCC 11170]
 gi|83575902|gb|ABC22453.1| guanylate cyclase (GGDEF domain) with PAS/PAC sensor and Response
           Regulator Receiver modulation [Rhodospirillum rubrum
           ATCC 11170]
          Length = 433

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 11/187 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           S +     +   + + +  D L+GL N + F       +     Y+  L ++F DID FK
Sbjct: 245 SDITFRRRAEEELVRQATTDPLTGLPNRALFQKLLVSGLERARRYDRHLGLLFVDIDGFK 304

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
           Q+ND FGH  GD+V+  ++ +L         V RLGG+EF        +E +   +A  +
Sbjct: 305 QVNDRFGHEGGDEVLREVARRLRRAVRVSDEVARLGGDEFTLLLSEVKAESDVETVAAKV 364

Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +++  +  +I   P + ++ S G+A          +++  AD+A+Y AK+ G+NR    
Sbjct: 365 VQVLGEA-FSIEDQPLV-LSASVGVALSPADGRDAESLLRAADEAMYRAKRGGKNRYALA 422

Query: 259 SDIENNT 265
           S     T
Sbjct: 423 SAAPGQT 429


>gi|16128989|ref|NP_415544.1| diguanylate cyclase [Escherichia coli str. K-12 substr. MG1655]
 gi|238900284|ref|YP_002926080.1| putative diguanylate cyclase [Escherichia coli BW2952]
 gi|301646744|ref|ZP_07246602.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|2495590|sp|P75908|YCDT_ECOLI RecName: Full=Probable diguanylate cyclase YcdT; Short=DGC
 gi|1787262|gb|AAC74110.1| diguanylate cyclase [Escherichia coli str. K-12 substr. MG1655]
 gi|238862238|gb|ACR64236.1| predicted diguanylate cyclase [Escherichia coli BW2952]
 gi|260449831|gb|ACX40253.1| diguanylate cyclase [Escherichia coli DH1]
 gi|301075070|gb|EFK89876.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
          Length = 452

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 22/258 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LV 66
            + +WL        F+   + I+  +    F A +  I+ +F+    ++ +Y    I +V
Sbjct: 199 MIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVV 258

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             L++++I +            I   L ++ N    ++  D L+ + N + F + L    
Sbjct: 259 SKLTVMVIFMC----------HIFSALRVTKN----IAHRDPLTNIFNRNYFFNELTVQS 304

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +      ++  DID+FK++ND +GHPVGD+VI  + + +         + R+GGEEF 
Sbjct: 305 ASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFG 364

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYR 239
                   + A  LA  +R+ +E    +         +TIS G +  + +    + I   
Sbjct: 365 VLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRL 424

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK++GRN+VV 
Sbjct: 425 ADNALYEAKETGRNKVVV 442


>gi|118581565|ref|YP_902815.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Pelobacter propionicus DSM
           2379]
 gi|118504275|gb|ABL00758.1| diguanylate cyclase/phosphodiesterase [Pelobacter propionicus DSM
           2379]
          Length = 690

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 11/167 (6%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDK 153
              +  D L+GLLN  + +  L    E+        +++F D+D FK+IND+ GH +GD 
Sbjct: 347 EYRANHDALTGLLNRFSLMQRLAQSLEQARSDEHHFAVLFIDLDRFKEINDSLGHHMGDL 406

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISS 212
           ++  ++ +LV        V RLGG+EF  A     S  + A LA+ +R+ I  SQ  +  
Sbjct: 407 LLVEVAARLVAAVRASDIVARLGGDEFVVAMPHIRSAIDPAFLADKIRRAI--SQPFLLE 464

Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           G  +  T S GI+        +  ++  AD A+Y AK  GRN    F
Sbjct: 465 GHELLTTPSIGISVFPDDGGNVEELLKNADTAMYHAKSRGRNNYQFF 511


>gi|260598122|ref|YP_003210693.1| RNase II stability modulator [Cronobacter turicensis z3032]
 gi|260217299|emb|CBA31265.1| Protein gmr [Cronobacter turicensis z3032]
          Length = 684

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 89/186 (47%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 239 SGTDITEERRAQERLRVLANTDAITGLPNRNAIHEMISDAIAKRGETQVGIVYLDLDNFK 298

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + RLGG+EF   A  +S+     +++ + 
Sbjct: 299 KVNDAYGHMFGDQLLQAVSLAILSCLEKDQVLARLGGDEFIVMATDTSQAALEAMSSRI- 357

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             I   +     G   ++   S GIA    H +   ++I  AD A+Y AK++GR +   F
Sbjct: 358 --ITRLKHPFRIGLIEVYTGCSLGIALAPQHGDDRESVIRNADTAMYTAKENGRGKFCVF 415

Query: 259 SDIENN 264
               N 
Sbjct: 416 CPEMNQ 421


>gi|258627327|ref|ZP_05722111.1| GGDEF family protein [Vibrio mimicus VM603]
 gi|258580365|gb|EEW05330.1| GGDEF family protein [Vibrio mimicus VM603]
          Length = 505

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 103/241 (42%), Gaps = 16/241 (6%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS----LVIISITISLLLGYISGS 88
           I   +F ++V+++ N+++    + P      +L +  +    +   S  IS  +   + +
Sbjct: 261 ILALLFFSSVMYMVNLWVVVTLIKPITAANQVLQQFKTSGGKMPDASTFISAEMKEFAST 320

Query: 89  I---LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFK 140
           I   + +L  S   +   S  D L+ + N       L  Y        L +   DIDYFK
Sbjct: 321 INHIVTQLDESQQVLRWQSEHDPLTRISNRRYLEKQLKGYLSDRPCRYLVLYLIDIDYFK 380

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199
             NDNFGH  GD+ +  ++  L  +       V R GGEEF       SE +A   A  +
Sbjct: 381 PFNDNFGHLAGDEALCSVAQALQAIEFDGEKIVTRFGGEEFCVVLASDSELDAEQFAQQI 440

Query: 200 RKIIENSQINISSGPSI-HITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              +    I         ++T+S G   A     +   ++ ++AD ALY AK+SGRNR V
Sbjct: 441 HTKVAELAIANPQDSDFQYLTVSIGGVYAISPRMDAYLSLFHQADMALYEAKESGRNRYV 500

Query: 257 C 257
            
Sbjct: 501 V 501


>gi|213420659|ref|ZP_03353725.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 527

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 123 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 182

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF      +S    E  A+ + 
Sbjct: 183 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRIL 242

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 243 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSESLIRTADTAMYNAKEGGRGQFC 297

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 298 VFSPEMNQ 305


>gi|152995922|ref|YP_001340757.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150836846|gb|ABR70822.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 300

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 77/179 (43%), Gaps = 9/179 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
            S + E      ++  LS  D L+GL N       L         Y    SI+ FD+D  
Sbjct: 122 ASNISERHELEIKLRTLSDTDQLTGLFNRRKLERDLALHYEAFERYAVPASILMFDLDNL 181

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K+IND  GH  GD++I  + D             R GG+EF       + + A   AN L
Sbjct: 182 KKINDTLGHFSGDEIIMTIGDICRSELRKTDIACRFGGDEFVIGLPNMNLENAVTFANRL 241

Query: 200 RKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           RK     ++N  S   I I+IS G+             + RAD ALY AK+SG+++V  
Sbjct: 242 RKHF-KLELNRFSTEDIPISISIGVVTMEPADRSFEETLRRADDALYEAKRSGKDQVRL 299


>gi|113968628|ref|YP_732421.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113883312|gb|ABI37364.1| diguanylate cyclase [Shewanella sp. MR-4]
          Length = 391

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 102/237 (43%), Gaps = 13/237 (5%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS-LVIISITISLLLGYIS- 86
           +  ++   +    +IF    F+        +    I  E  + ++   +  +L++  +  
Sbjct: 152 VATAMVLPLVAMVIIFTFRFFIALFSSNEDHTFIAIYREEATPMLWFYVVFTLVINIVMI 211

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
           G+ +  L    ++I  L+  D L+GL N  A    L          NE  S++  DID+F
Sbjct: 212 GNAMTRLV---SKIKILAERDQLTGLWNRHAMQKRLATIHQLWQKNNEPYSVILLDIDHF 268

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQIND +GH +GD  +   +     V      + R GGEEF      ++ + A  +A+ L
Sbjct: 269 KQINDQYGHAIGDLALLTAARLFSTVLREHDVLCRHGGEEFLVLLPATNARAARTVADKL 328

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +++  + +    G  I +  S G A          ++  AD A+Y AK  GR+R+ 
Sbjct: 329 HRVLRENPLQC-QGQEIQLYASIGYATIYRGCEPDKLLIEADHAMYQAKSEGRDRIC 384


>gi|114563838|ref|YP_751351.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella frigidimarina NCIMB 400]
 gi|114335131|gb|ABI72513.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella frigidimarina NCIMB 400]
          Length = 1451

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 7/184 (3%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIND 144
            S +         + +L+  D L+GL N S+    +S+L   +   +++  D+D FK+IND
Sbjct: 1000 SDITRRKQQEEELRKLTNNDLLTGLPNRSSLQVTLSNLVKKDVHHTLMVLDLDNFKRIND 1059

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILANDLRKII 203
            + GH +GD ++  +++++ +       + RLGG+EFA            A +A  +   +
Sbjct: 1060 SLGHQIGDDLLIGVAERIKLAIPKHASLYRLGGDEFALLVDQHPDIGSCAAIATQVINCL 1119

Query: 204  ENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDIE 262
            +       +  S+ + IS GI      E     ++ +AD A+Y AK  G NR   +S+  
Sbjct: 1120 K--PAFTLNNDSLVLGISIGIVLYPEDEQNEQALLRKADIAMYHAKSGGGNRYQFYSESL 1177

Query: 263  NNTC 266
            N   
Sbjct: 1178 NQNA 1181


>gi|254416220|ref|ZP_05029974.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196176902|gb|EDX71912.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 332

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +L  +  ++ +L+ +D L+ + N   F                 LS++  D+DYFK  ND
Sbjct: 133 KLQKANAQLKRLATLDSLTQVANRHRFDEYFNQVWRISRREQWVLSLLLCDVDYFKLYND 192

Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           + GH  GD+ +  ++  +   V      V R GGEEFA     +  Q A  +   ++  +
Sbjct: 193 SKGHQAGDECLYKVAQAMKQVVKRPADLVARYGGEEFAVILPNTPAQGALQVGKFIQSKL 252

Query: 204 ENSQINISSGP-SIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               +     P    +T+S G++    CH+     +I  ADQALY AK++GR+R V 
Sbjct: 253 TQLGLTHPRSPIKNSVTLSVGVSSTVPCHQTSPEALIAAADQALYQAKETGRDRAVF 309


>gi|195873266|ref|ZP_03080052.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195634533|gb|EDX52885.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 663

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           +G+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           +IND +GH  GD+++  +S  L+        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+      I + +G +I I++        H +   ++I  AD A+Y AK+ GR +  
Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISL-----APRHGQDSESLIRTADTAMYNAKEGGRGQFC 393

Query: 257 CFSDIENN 264
            FS   N 
Sbjct: 394 VFSPKMNQ 401


>gi|186472006|ref|YP_001859348.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia phymatum STM815]
 gi|184194338|gb|ACC72302.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia phymatum STM815]
          Length = 772

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 83/196 (42%), Gaps = 22/196 (11%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------------------GSY 125
            +S + +  +  +  ++  L+  D L+GL N +     +                   + 
Sbjct: 313 LVSFNDISAVQAARAQLQYLATRDSLTGLYNRAYLADRMSERLAPHTSAAAHGRGEPRAA 372

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
             +L+++F D+D FK++ND  GH  GD ++  ++ +L     +   + R+GG+EF  A  
Sbjct: 373 ARRLAVLFVDLDGFKKVNDIAGHEAGDALLCSVAARLAGCVRSEDTLARVGGDEFVIATG 432

Query: 186 G-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQA 243
             +       LA  +   I   +     G   ++  S GI+          T++  AD A
Sbjct: 433 DYTDASFLTSLAQRVLDTIA--RPFAVGGNEYYLGASIGISLFPDDGCDAQTLMRNADSA 490

Query: 244 LYVAKKSGRNRVVCFS 259
           +Y AK+ GR+    F+
Sbjct: 491 MYDAKQRGRHNFQFFT 506


>gi|147669830|ref|YP_001214648.1| diguanylate cyclase with GAF sensor [Dehalococcoides sp. BAV1]
 gi|146270778|gb|ABQ17770.1| diguanylate cyclase with GAF sensor [Dehalococcoides sp. BAV1]
          Length = 841

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 89/185 (48%), Gaps = 12/185 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           ++ E    Y + +  +  D L+ L NH  F   +         +    S++  D+D FK 
Sbjct: 451 VIIENAQLYTQATIRANTDELTRLYNHRHFHERIEQEIARGSRFGNTFSLILLDLDLFKV 510

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            ND +GH  GD+++  L   L     +     R GGEEFA    G+  ++A  +A  +RK
Sbjct: 511 YNDVYGHLAGDQLLRRLGKILENSIRSIDMAFRYGGEEFAIMLPGTKIEDAYHVAERIRK 570

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFSD 260
            IE+     SS   + IT S G+A       +   II +AD ALY +K++GRNR    +D
Sbjct: 571 NIESK----SSFRDMPITASLGLANWPTDGVMKEEIIAKADAALYRSKETGRNRTSLPAD 626

Query: 261 IENNT 265
           + NN+
Sbjct: 627 LNNNS 631


>gi|148545617|ref|YP_001265719.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida F1]
 gi|148509675|gb|ABQ76535.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas putida F1]
          Length = 926

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + +  ++  RI +L+  D L+ L N  AFI SL           + ++  DID FK+IN
Sbjct: 483 DVTQTKLAQQRIERLAYTDNLTNLGNRPAFIRSLDERFARDGESSMCLLLVDIDNFKRIN 542

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++  L+ +L     +   + R    EFA     +S ++   +A  L   +
Sbjct: 543 DSLGHQTGDKLLISLARRLRNSLHSGGILARFASNEFAVLLDHTSLEDGQGVAQQLLCTL 602

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I++T S G+A    H    ++++  A  AL+ AK +G+++V  F+++ 
Sbjct: 603 DKPMF--VDNQLINVTASVGLACAPLHGVDPASLMKNAGLALHKAKANGKHQVQVFTEVL 660

Query: 263 NNTC 266
           N   
Sbjct: 661 NAEA 664


>gi|323493876|ref|ZP_08098993.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
 gi|323311817|gb|EGA64964.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
          Length = 411

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 76/260 (29%), Positives = 113/260 (43%), Gaps = 35/260 (13%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIF---IANIFLFYIGLTPFYGLEYILVENLSLVIISIT 77
           S  P   +IY      IF   V+    I ++ L+   L       +  V ++S  + S+ 
Sbjct: 163 SKLPFILVIYSLAMVLIFAICVLSHNRIIDVVLYATTLLASTTFVFFHVPHISSTMFSLA 222

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDID 137
             LLL Y+       L  SY     L+  D L+ +    A  S L     + +I   DID
Sbjct: 223 GILLLVYL-------LSASYE----LAFKDTLTDIPGRLALESDLRHLGRRYTIAMLDID 271

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK  ND +GH  GD V+  ++ +L +V G    V R GGEEF     G    EA     
Sbjct: 272 HFKSFNDTYGHDTGDDVLKLVASRLQLVGGR-AKVYRYGGEEFTVLFKGKLADEAQDHLE 330

Query: 198 DLRKIIENSQINI--------------------SSGPSIHITISAGIAERCHKEPISTII 237
            LR  IE+ Q+ +                     +  S+++TIS G+A+      + T++
Sbjct: 331 LLRSSIESYQMTLRNQDARPKDDKVGSKKRGGKKNQDSVNVTISIGVADSSESNDVYTVM 390

Query: 238 YRADQALYVAKKSGRNRVVC 257
             AD ALY AK+SGRN+V  
Sbjct: 391 KSADSALYKAKQSGRNKVCI 410


>gi|83647412|ref|YP_435847.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83635455|gb|ABC31422.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 435

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 64/263 (24%), Positives = 115/263 (43%), Gaps = 36/263 (13%)

Query: 32  SIFFSIFIATVIFI----ANIFLFYIGLTPFYGLEYILVENLS----LVIISITISLLLG 83
           SI   IF+ TV+ +       F   + L+    + +++  + S    L+ +   ++L+  
Sbjct: 141 SILSVIFVCTVLRLQFHYIFPFALLMWLSQVLAMHFLMHLHASQFTELLFLHTFVTLISV 200

Query: 84  YISGSILKE-----------------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY- 125
            +   +  E                 L  ++  + +LS +D L+ + N   F  SL +  
Sbjct: 201 LVCYRVEYETRKNFLQQLLLLYEQEELRAAHAELERLSLMDSLTQVANRRHFNKSLEAEW 260

Query: 126 ------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGE 178
                 ++ L+++  D+D+FK  ND +GH  GD  +  ++D L          V R GGE
Sbjct: 261 NRCLRDDKPLALLMVDVDFFKAYNDAYGHQRGDDCLMNVADCLTQTSRRAADLVARYGGE 320

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIA--ERCHKEPIST 235
           EFA     + +  A  LA  + + I    I     P +  +T+S G +       +  +T
Sbjct: 321 EFAVILPHADQAAAQRLAEQIVRQIYELNIENEGSPELKRLTVSVGFSALAPSQGDTPNT 380

Query: 236 IIYRADQALYVAKKSGRNRVVCF 258
           +I +AD ALY+AK+ G+NR   F
Sbjct: 381 LISQADSALYMAKRKGKNRAHGF 403


>gi|152967529|ref|YP_001363313.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151362046|gb|ABS05049.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 731

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 78/175 (44%), Gaps = 8/175 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGD 152
            + +L++ D L+GL N S     L    E       +++V  D+D FK +ND  GH +GD
Sbjct: 299 ELVRLAQCDSLTGLANRSVMDLRLVEALETATPTDAVALVLLDLDRFKLVNDTLGHQIGD 358

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINIS 211
            ++  ++ +L         + RLGG+EF     G    EA  I+A DL + +    +   
Sbjct: 359 ALLRQVAVRLQDAVPPGAVLARLGGDEFVVMVPGVDRPEAVSIMARDLLRRLRAPMMLPG 418

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
                  T SAGIA   H      +   AD ALY AK  GR+RV  +     +  
Sbjct: 419 LPEPFVCTSSAGIAV-GHSGTADDLFRSADMALYRAKDGGRDRVALYDSAMRHEA 472


>gi|302875629|ref|YP_003844262.1| diguanylate cyclase with TPR repeats [Clostridium cellulovorans 743B]
 gi|302578486|gb|ADL52498.1| diguanylate cyclase with TPR repeats [Clostridium cellulovorans 743B]
          Length = 1778

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 89/169 (52%), Gaps = 11/169 (6%)

Query: 94   FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNF 146
             I  ++++ ++ ID L+      A  S +          +E+ S++ FD+D FK IND F
Sbjct: 1432 IIEKHQLAMIASIDKLTKAYTRKALESYMIQQLEHSKNNDEEFSLIIFDVDKFKDINDTF 1491

Query: 147  GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
            GH  GD V++ +   ++         GR GGEEF      +S  EA  +A  LR  +E +
Sbjct: 1492 GHQTGDLVLSSICKVILSSIRKHDICGRYGGEEFIVLLPNTSTNEALEIAERLRIKVEEA 1551

Query: 207  QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
            +I    G    +TIS GI+    H   IS ++ RADQALY+AK++GRN+
Sbjct: 1552 KI---LGDRRDVTISLGISSYPIHGSDISKLVKRADQALYMAKETGRNK 1597


>gi|301346545|ref|ZP_07227286.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii
           AB056]
          Length = 631

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 100/197 (50%), Gaps = 10/197 (5%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------S 124
           LV+++  I  +L         EL  +   ++ LS  D L+ L N    +           
Sbjct: 225 LVLVASFIVAVLEQRLNQRNLELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSDHR 284

Query: 125 Y-NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
           Y ++K++ ++ D+D FK +ND FGH +GD+++  ++++L         + R+GG+EF   
Sbjct: 285 YKDQKIAFLYIDLDRFKSVNDAFGHHIGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLI 344

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQ 242
           A  +  +EA  LA  +  +I++S     SG  I+I+ S GIA    H + +  ++  AD 
Sbjct: 345 AENTDTEEAMQLAEKVLHLIQDS--YQISGKEINISASLGIALFPEHGQNVQDLLMNADA 402

Query: 243 ALYVAKKSGRNRVVCFS 259
           A+ ++K+ GRN    FS
Sbjct: 403 AMLMSKEQGRNTYTVFS 419


>gi|239996737|ref|ZP_04717261.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Alteromonas macleodii ATCC 27126]
          Length = 450

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 11/194 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFF 134
           L  +      EL  + +++ +L+  D L+ + N  AF+ +              + I   
Sbjct: 235 LESLVNRRTSELRSANHKLEKLAYYDALTNIPNRRAFLDAFAKSLNFAKRNGHAMLIGIA 294

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D+FK IND++GH  GD V+  ++  +   F     +GR+GGEEFA   + +S      
Sbjct: 295 DVDHFKAINDSYGHGFGDDVLTIVAQTMQQFFRQEDAIGRIGGEEFAFCMVLTSPVSPRQ 354

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGR 252
           L +  R+ +              +T+S G        +  I  ++  AD+ALY AK  GR
Sbjct: 355 LLDRFREKVSILHETHPPLKGRQVTLSLGAVYVSDLKEVSIKQLLCDADEALYRAKNKGR 414

Query: 253 NRV--VCFSDIENN 264
           N +   C+ DI+N 
Sbjct: 415 NTIECECYDDIDNE 428


>gi|162450035|ref|YP_001612402.1| FHA/GGDEF domain-containing protein [Sorangium cellulosum 'So ce
           56']
 gi|161160617|emb|CAN91922.1| FHA and GGDEF domain protein [Sorangium cellulosum 'So ce 56']
          Length = 310

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 80/168 (47%), Gaps = 10/168 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
             ++   +  D L+   N   F+  L         +   LS++ FD+D+FK+IND FGH 
Sbjct: 136 QQQMYDAALRDALTKAFNKKYFLDRLETEVSYARRHGAHLSLLMFDVDHFKRINDTFGHL 195

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+A ++        T     R GGEEF     G   + A IL   LR +IE S   
Sbjct: 196 AGDYVLARIAKIASHTVRTEDVFARYGGEEFGILCRGVGLENAGILGERLRLLIEGSVFE 255

Query: 210 ISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255
              G  +  TIS G+A       +    +I  AD+ALY AK++GRNRV
Sbjct: 256 H-EGVRMPTTISVGVAAHPELAVQTGMELIAAADEALYEAKRTGRNRV 302


>gi|197119893|ref|YP_002140320.1| diguanylate cyclase [Geobacter bemidjiensis Bem]
 gi|197089253|gb|ACH40524.1| diguanylate cyclase [Geobacter bemidjiensis Bem]
          Length = 385

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 62/256 (24%), Positives = 105/256 (41%), Gaps = 20/256 (7%)

Query: 22  FSPHTFMIYFSIFFSIFIAT---------VIFIANIFLFYIGLTPFYGLEYILVENLSLV 72
           F+  T   + S+ + I +AT          I        Y  L  F    +    ++   
Sbjct: 93  FTGKTSSPFISVLYLILMATSLTLGRWIAFIMTGLAIALYTLLASFQSPSF--WYDIGGH 150

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSY 125
           ++ I   +L+ ++   +  E   +   + +LS  D L+ L N  +F +           Y
Sbjct: 151 VVKIFPFILIAHLGALLRGEAESARAEVERLSLTDDLTQLNNMRSFEALALQQEKISKRY 210

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
               SI   D D  KQIND  GH  G ++I + +  +           R GG+EF     
Sbjct: 211 GTPFSICMLDADNLKQINDRHGHLAGTELIKWTARIIASNIRESDVAARFGGDEFIIMFA 270

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
           G  +Q        + +++  S  +   G  +  T+SAG+A      E + TI+ +AD A+
Sbjct: 271 GQEQQNIVAAVERIVRVMHASPFSF-EGELVQGTLSAGVASFPRDGEELRTIVKKADLAM 329

Query: 245 YVAKKSGRNRVVCFSD 260
           Y +K+ G+NRV  F D
Sbjct: 330 YRSKRRGKNRVSLFGD 345


>gi|118590203|ref|ZP_01547606.1| sensory box/GGDEF family protein [Stappia aggregata IAM 12614]
 gi|118437175|gb|EAV43813.1| sensory box/GGDEF family protein [Stappia aggregata IAM 12614]
          Length = 1042

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 81/178 (45%), Gaps = 9/178 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            L+E   +  +I  L++ D L+ L N + F + L         +    +++  D+D FK 
Sbjct: 580 DLRERKKAEAQILHLAQHDPLTDLPNRAVFNAELKKAIGKCKQHGLSAALLIIDLDRFKD 639

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLR 200
           IND  GHPVGD VI   +D+L         V RLGG+EFA    G     +A  +A  L 
Sbjct: 640 INDLHGHPVGDVVIRVTADRLRQACRHGDTVSRLGGDEFAIIQNGVQFANQAEDMAMRLV 699

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           K +    I+   G  +    S G+A     +    +I  AD ALY AK  GR+    F
Sbjct: 700 KSLSE-PIDCGHGLILKPGASIGVALMTGYDAEDQVISNADIALYNAKNGGRHTYCVF 756


>gi|221067174|ref|ZP_03543279.1| diguanylate cyclase [Comamonas testosteroni KF-1]
 gi|220712197|gb|EED67565.1| diguanylate cyclase [Comamonas testosteroni KF-1]
          Length = 409

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 62/237 (26%), Positives = 105/237 (44%), Gaps = 11/237 (4%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS- 86
           M+   + F+I I  +  +  +    I       L+   + +   ++  I +S L   I  
Sbjct: 149 MVVEMVVFAILIGGICILNAMKFVLILQGGLQALD---MNSHFQMVFYIYMSFLGTVIPP 205

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQ 141
           G++   L    + +  ++  D L+ LLN    +  LG++        + ++  DID+FK+
Sbjct: 206 GAVWLVLRRLTDELGSMAAQDPLTRLLNRRGLVQGLGAHFAAAKTVPVHLLIVDIDHFKR 265

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND++GH  GD V+  +++ +           RLGGEEF     G    EA  LA  +R 
Sbjct: 266 INDSYGHQFGDMVLCRVAEVIRQSTRKSDLKCRLGGEEFVVLCPGLRGDEALQLAERIRA 325

Query: 202 IIENSQIN-ISSGPSIHITISAGIAERCHKEPISTI-IYRADQALYVAKKSGRNRVV 256
            I    I  IS    +  T + G++          + + +AD ALY  K +GRNRV 
Sbjct: 326 AIAEITIPGISLHGCVTCTATIGVSNPFIASHAFDLALQQADAALYRGKHAGRNRVQ 382


>gi|157158903|ref|YP_001462259.1| diguanylate cyclase [Escherichia coli E24377A]
 gi|157160550|ref|YP_001457868.1| diguanylate cyclase [Escherichia coli HS]
 gi|157066230|gb|ABV05485.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli HS]
 gi|157080933|gb|ABV20641.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           E24377A]
 gi|320200258|gb|EFW74846.1| Sensory box/GGDEF domain protein [Escherichia coli EC4100B]
 gi|323962799|gb|EGB58376.1| GGDEF domain-containing protein [Escherichia coli H489]
          Length = 476

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 22/258 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LV 66
            + +WL        F+   + I+  +    F A +  I+ +F+    ++ +Y    I +V
Sbjct: 223 MIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVV 282

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             L++++I +            I   L ++ N    ++  D L+ + N + F + L    
Sbjct: 283 SKLTVMVIFMC----------HIFSALRVTKN----IAHRDPLTNIFNRNYFFNELTVQS 328

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +      ++  DID+FK++ND +GHPVGD+VI  + + +         + R+GGEEF 
Sbjct: 329 ASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFG 388

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYR 239
                   + A  LA  +R+ +E    +         +TIS G +  + +    + I   
Sbjct: 389 VLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRL 448

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK++GRN+VV 
Sbjct: 449 ADNALYEAKETGRNKVVV 466


>gi|89092197|ref|ZP_01165151.1| hypothetical protein MED92_05278 [Oceanospirillum sp. MED92]
 gi|89083285|gb|EAR62503.1| hypothetical protein MED92_05278 [Oceanospirillum sp. MED92]
          Length = 432

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 19/192 (9%)

Query: 81  LLGYISGSILKELFISYNR-------ISQLSRIDCLSGLLN-------HSAFISSLGSYN 126
            L  ++   + EL  + ++       + +++  D L+GL +          F S      
Sbjct: 235 FLILMAEYDVTELHQAIDKAEEVQGELRRMAHYDALTGLPSLYFLLEQAEMFFSRAQRNQ 294

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           E ++I+F D+D FK++ND +GHPVGD+V+   + ++           R+GG+EF     G
Sbjct: 295 ESVAILFIDLDGFKKVNDTWGHPVGDRVLVEAAQRISKELRRSDQAARIGGDEFVVMLDG 354

Query: 187 SSEQEAA-ILANDLRKIIENSQ-INISSGPSIH--ITISAGIAERC-HKEPISTIIYRAD 241
               EAA  +A  L   +E     +   G  +   I+ S GIA    H E +  +I  AD
Sbjct: 355 IRMPEAAGDVAQKLINALEKPICFSTDEGVEVEALISASIGIALCPEHGEDLERLIKAAD 414

Query: 242 QALYVAKKSGRN 253
            A+Y  K+SG+ 
Sbjct: 415 VAMYKVKRSGKG 426


>gi|310642768|ref|YP_003947526.1| diguanylate cyclase with gaf sensor [Paenibacillus polymyxa SC2]
 gi|309247718|gb|ADO57285.1| Diguanylate cyclase with GAF sensor [Paenibacillus polymyxa SC2]
          Length = 661

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 13/167 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDK 153
           +  + +L+ +D L+GL         +  + EK    S++  DID FKQ+ND +GH  GD+
Sbjct: 496 HAEVRRLANMDMLTGLYVRHYVDRIIQEHQEKDFCGSLILVDIDQFKQVNDTYGHQTGDE 555

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  +S+ +           R GGEE A        Q+A   A  +R  +++        
Sbjct: 556 ILKSVSNIVRSATRDEDVCARWGGEELAIYLPQLGVQQALGYAEKIRSCVQHETNP---- 611

Query: 214 PSIHITISAGIAER---CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               +T+S GIAE      +  I ++ YRAD ALY AK  GRNR+V 
Sbjct: 612 ---QVTVSCGIAEWNWLDEQISIESLFYRADMALYEAKNEGRNRIVI 655


>gi|152987658|ref|YP_001350884.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150962816|gb|ABR84841.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 542

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 54/160 (33%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 106 IDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+GL NH+  +                LS    DID+FKQ+ND FGHP+GD+VI  L
Sbjct: 379 RDSLTGLYNHTHTLQLLEDARLRARRDGRPLSFAMLDIDHFKQVNDRFGHPMGDRVIKGL 438

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           +  L         +GR GGEEFA     +    A ++ +++R+         +    +  
Sbjct: 439 ALFLKQRLRKTDHIGRYGGEEFAVVLPDTDLDAARLVLDEIRQRFAEIHYP-AQPADLRC 497

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           T S GIAE      I ++  +AD+ALY AK  GRNR+  +
Sbjct: 498 TFSCGIAELTPDLDIKSMAKQADEALYRAKHGGRNRIEVY 537


>gi|91793907|ref|YP_563558.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91715909|gb|ABE55835.1| diguanylate cyclase [Shewanella denitrificans OS217]
          Length = 518

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 84/174 (48%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           KE    + +++ L   D L+ L N +A    +         +N  L I   DID+FK IN
Sbjct: 347 KEQLFEHQKLNLL---DPLTQLANRAALEDKMEQEYRHHKRFNTPLWIAVIDIDHFKSIN 403

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           DNFGH  GDK +  ++  L        FV R GGEEF       +E   + L N +R+ I
Sbjct: 404 DNFGHSTGDKTLQVIAMALKNSLRESEFVARYGGEEFVLLLPDVTELHISQLLNRVREKI 463

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +N      +   I +T+S G A+    E  +    RAD ALY AK +GR+RVV 
Sbjct: 464 KNIPFKFKN-QRITVTLSIGAAQVLENELCTETFERADAALYKAKNNGRDRVVI 516


>gi|59714159|ref|YP_206934.1| GGDEF domain-containing protein [Vibrio fischeri ES114]
 gi|59482407|gb|AAW88046.1| GGDEF domain protein [Vibrio fischeri ES114]
          Length = 530

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 102/212 (48%), Gaps = 11/212 (5%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           P + +E I    + LV   I +S ++  +   +  +  I +N I +L+  D L+GL+N  
Sbjct: 319 PKWSIERISSSEIILVGCFILLSFIVSLVITQLQLKKKIDHNEIKKLAHHDSLTGLINRG 378

Query: 117 AF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
            F       +        KL++++ D+D FK +NDNFGH  GD  +  ++  L   F   
Sbjct: 379 YFKKLFHWKMQKARKNETKLALIYIDLDGFKDLNDNFGHSAGDLALKAVARNLYSTFSEN 438

Query: 170 MFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
            +V RLGG+EFA        E+E   L  +  +   N+ + +   P   ++ S G+A   
Sbjct: 439 SYVARLGGDEFAVLIHTVIDEEEIFALVEEFLES-SNTPLMLEDIP-YQLSTSIGLAFFP 496

Query: 229 -HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            H   I+ +++ AD A+Y  K+SG+N    F 
Sbjct: 497 EHGRSINELMHNADAAMYDIKRSGKNGFKVFE 528


>gi|84393501|ref|ZP_00992256.1| sensory box/GGDEF family protein [Vibrio splendidus 12B01]
 gi|84375854|gb|EAP92746.1| sensory box/GGDEF family protein [Vibrio splendidus 12B01]
          Length = 634

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 58/188 (30%), Positives = 83/188 (44%), Gaps = 18/188 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDI 136
           S   + +      ++  LS  D L+G  N   F   L             E+  +   DI
Sbjct: 453 SFVDISKHKELEKKLRNLSEKDALAGCWNRRKFDLELRDECSRVNRYPTREQSCLAILDI 512

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK+IND FGH  GD+VI  ++  L        FV R+GGEEF      ++ + A  + 
Sbjct: 513 DYFKRINDRFGHDYGDRVIQTVAQVLQRECRETDFVARIGGEEFGVILPHTTTEGAEYVL 572

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           N LR  +     N+       +T+S GI    +   ++     AD ALY AK +GRN V 
Sbjct: 573 NRLRIAVSLELDNV-------VTVSGGITNITNDPALN--YKCADLALYEAKAAGRNNVC 623

Query: 257 CFSDIENN 264
            F D E +
Sbjct: 624 LFLDKEMS 631


>gi|332524363|ref|ZP_08400581.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2]
 gi|332107690|gb|EGJ08914.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2]
          Length = 545

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 11/179 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE----------KLSIVFFDID 137
           + ++EL     R+S     D L+ + N      +  +              L+I   DID
Sbjct: 366 TRVRELEGELRRLSDEVSTDALTQVANRRGLAQAFDAERARVDRAGPEAAPLAIGLIDID 425

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK++ND  GH  GD  +  L+  +         + R GGEEF      +   EA     
Sbjct: 426 NFKKLNDTLGHAAGDLALKSLAAAVRERLRPVDHLARFGGEEFVVLLPATPLAEAQQALT 485

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            L++ +  + + +     + +T SAG+      E +   + RAD+ALY AK+SG+NR  
Sbjct: 486 RLQRGLTEA-LFLHEQREVFVTFSAGVTAWRPGEALEIALERADEALYEAKRSGKNRTC 543


>gi|331646613|ref|ZP_08347716.1| protein gmr [Escherichia coli M605]
 gi|330911155|gb|EGH39665.1| hypothetical protein ECAA86_01494 [Escherichia coli AA86]
 gi|331045365|gb|EGI17492.1| protein gmr [Escherichia coli M605]
          Length = 661

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 91/186 (48%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSL--GSYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    I      + N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQVLIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395

Query: 259 SDIENN 264
           +   N 
Sbjct: 396 TPEMNQ 401


>gi|284052421|ref|ZP_06382631.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Arthrospira platensis str. Paraca]
          Length = 642

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 52/196 (26%), Positives = 87/196 (44%), Gaps = 16/196 (8%)

Query: 84  YISGSI--LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVF 133
           Y  GSI  +  L  +  ++   +  D L+ L N + F+  L           N + +I+F
Sbjct: 285 YYEGSIMEITHLKETEAKLRHSASHDSLTDLWNRAFFLDKLNDSLRKCKTLDNYQFAILF 344

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEA 192
            D+D F+ IND+ GH +GD+++  +S +L         + RLGG+EF       +  QEA
Sbjct: 345 LDLDGFQFINDSLGHAIGDQLLIEISKRLTDCV-DSHILARLGGDEFTILLENITDIQEA 403

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKS 250
             +A  +++ +    I +     I    S GI E    + E    ++  AD A+Y AK+ 
Sbjct: 404 IDVAERIQEAL-KLPIFLGDNQ-IFTGASIGIVEGNNSNYESSPEVLRDADTAMYRAKRQ 461

Query: 251 GRNRVVCFSDIENNTC 266
           G+   V F        
Sbjct: 462 GKGCYVVFDSTMRTNA 477


>gi|317049668|ref|YP_004117316.1| diguanylate cyclase [Pantoea sp. At-9b]
 gi|316951285|gb|ADU70760.1| diguanylate cyclase [Pantoea sp. At-9b]
          Length = 474

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 70/249 (28%), Positives = 122/249 (48%), Gaps = 22/249 (8%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIAN----IFLFYIGLTPFYGLEYIL----VENLSLVIIS 75
           P   +I+ +I   I I +++ +      I L   G+    G + +L    + ++ L + +
Sbjct: 215 PVPALIWCAIVLPIPITSLVLLITGITEIILVSHGVMNIQGDDALLPISHLTSVRLGVAT 274

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSI 131
           ITIS LL  +S   +++L     R+S  +  D L+ LL+ S    +L            +
Sbjct: 275 ITISPLLVAVSMDAIRQL---NQRLSLRANFDFLTQLLSRSGLYENLRQEPFSPQRAAGV 331

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           V  D+DYFK INDNFGH  GD V+  ++ ++  V      V R GGEEF       +  +
Sbjct: 332 VMLDVDYFKTINDNFGHDAGDGVLEEIARRIQDVVNNRGLVCRFGGEEFVVVVFDYNHSQ 391

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALY 245
              LA  +R+ +   +  +  G ++ +T S G+A      ER  +  ++ +I  AD+ LY
Sbjct: 392 LYQLAEVIRQSMVREKFWL-QGNTVTVTASLGLALGNAVNEREWQGVVNRLISAADKNLY 450

Query: 246 VAKKSGRNR 254
           ++K++GRN+
Sbjct: 451 LSKRNGRNQ 459


>gi|225848925|ref|YP_002729089.1| signal transduction response regulator [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643532|gb|ACN98582.1| signal transduction response regulator [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 442

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 61/171 (35%), Positives = 78/171 (45%), Gaps = 9/171 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I  L+ +D L+ + N    +  L         +N  LSI   DID FK IND+FGH VGD
Sbjct: 22  IYNLATLDFLTKIPNRRKLMMDLEKEILRAKRFNRPLSIALIDIDDFKIINDSFGHDVGD 81

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +  + D L         VGR GGEEF      +S       A  +RK IE S   I +
Sbjct: 82  LALLHVVDILKDSIRLTDIVGRYGGEEFLVIMPETSLDGTLKAAEKIRKNIEQSSF-IIN 140

Query: 213 GPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              I  T+S GIA    H      ++  AD  LY AKK G+NRV   +  E
Sbjct: 141 DTKIPFTVSIGIASTELHGYDSQLLLKAADLGLYKAKKEGKNRVEFLTKDE 191


>gi|224367473|ref|YP_002601636.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223690189|gb|ACN13472.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 600

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 10/182 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQIN 143
           +EL I  N++++LS  D L+GL N   F   LG+         + L+++  D+D+FK+ N
Sbjct: 411 QELAIVNNKLAELSVTDFLTGLANRRHFDEVLGTEWARAVRTFQPLTLIMIDVDHFKKFN 470

Query: 144 DNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D++GH  GD+ +  ++  L   +     FV R GGEEF+  + G+    A  LA  LR+ 
Sbjct: 471 DSYGHQAGDECLKKVASALVTNLCRAGDFVARYGGEEFSIISAGTDLAGARELAEKLRRA 530

Query: 203 IENSQINISSG--PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++   +         I I+I  G+     K+  S ++  AD+ALY AK  GRNR+  F +
Sbjct: 531 VQAMALMNEDSLFGIITISIGIGVCIPDRKQSASDLVCIADKALYEAKTRGRNRIEDFGE 590

Query: 261 IE 262
            +
Sbjct: 591 PQ 592


>gi|166712018|ref|ZP_02243225.1| GGDEF family protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 954

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 15/224 (6%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
           IA  + I +  L  IGL  +     +  E +   ++S        Y      +EL  +  
Sbjct: 729 IALYVLIGSGLL--IGLWRWRHRHLLARERMLAELVS-----ERTYQVEREKRELENARA 781

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
            ++  +  D L+GLLN S  + ++ +           L++V  D+D+FKQ+ND+ GH VG
Sbjct: 782 ALALKASHDALTGLLNRSGILEAMAAELQGCAHGEHPLAVVLIDLDHFKQVNDDHGHLVG 841

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+A +  +L         VGR GGEE      G + Q    L   + + +  +   + 
Sbjct: 842 DAVLAKVGARLTACLRDSDKVGRYGGEELLLLLPGMTRQSQRRL-RAIHEALSLAPYEVG 900

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   + +T S G++     +  ++++ RAD+ALY AK+SGRNR+
Sbjct: 901 AARPLQVTCSVGVSWFRVGDTAASLLARADEALYRAKRSGRNRI 944


>gi|83313593|ref|YP_423857.1| signal transduction protein [Magnetospirillum magneticum AMB-1]
 gi|82948434|dbj|BAE53298.1| Predicted signal transduction protein containing a membrane domain
           [Magnetospirillum magneticum AMB-1]
          Length = 982

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 11/173 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
             +        RI   +  D L+ L N    + +L           E+L++++ D++ FK
Sbjct: 536 RDITRKRRDEQRIRFHASHDALTRLPNRHTVMEALGEAIVRAEQTGERLAVLYLDVNRFK 595

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDL 199
            IND++GH VGD+++  ++ +L         +GRLGG+EF        +  AA   AN +
Sbjct: 596 DINDSYGHAVGDELLRQVARRLKACVRASDVIGRLGGDEFVMLLPSVGDHTAAQACANKV 655

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSG 251
                  +     G  +    S GIA          +++ RAD A+Y AK+ G
Sbjct: 656 LYAFA--EPFDMEGLQLFAGTSIGIALYPDDADGAESLLSRADAAMYHAKRGG 706


>gi|260887989|ref|ZP_05899252.1| GGDEF domain protein [Selenomonas sputigena ATCC 35185]
 gi|330838531|ref|YP_004413111.1| diguanylate cyclase [Selenomonas sputigena ATCC 35185]
 gi|260862240|gb|EEX76740.1| GGDEF domain protein [Selenomonas sputigena ATCC 35185]
 gi|329746295|gb|AEB99651.1| diguanylate cyclase [Selenomonas sputigena ATCC 35185]
          Length = 648

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 70/263 (26%), Positives = 116/263 (44%), Gaps = 19/263 (7%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMI-YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63
              + SI L  E    +    T ++   SI        + F  ++F +   +TPF  L +
Sbjct: 347 FAPWASILLWREAKRGNEYCRTALVPLLSIAPLGLFDGLWFQYHLFAWDTYITPFALLSF 406

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-- 121
           ++      V+ +I + +     S ++ K L        + ++ID L+   N   F  +  
Sbjct: 407 VV-----FVLSTIRMRIRDEVRSEAVQKSLENEIVEAKEKAQIDPLTRCFNRYKFNDTFP 461

Query: 122 -----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                  + +  L+ +  DID+FK++ND++GH  GD V++  +  L         + R G
Sbjct: 462 EWVKVAQNTDGHLAFMILDIDFFKRVNDDYGHDEGDHVLSSFAGILHTSLDRRHLLVRWG 521

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPIS 234
           GEEF    L  S +EA I AN LR+ I  + I         I  S G++      K+ + 
Sbjct: 522 GEEFVILCLHYSLKEAEIFANHLRERIAQAPICNYR----PIQCSIGVSRWHGVQKDTVE 577

Query: 235 TIIYRADQALYVAKKSGRNRVVC 257
            ++ RAD ALY AK+ GRN V  
Sbjct: 578 ALLKRADDALYRAKQEGRNCVRI 600


>gi|254502336|ref|ZP_05114487.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222438407|gb|EEE45086.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 852

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 65/217 (29%), Positives = 103/217 (47%), Gaps = 15/217 (6%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISG--SILKELFISYNRISQLSRIDCLSGLLNHS 116
           + L    VEN  LVI+ I  + L+ +        +EL  +   I+ ++  D L+GL N  
Sbjct: 371 HRLLRSRVENGDLVILRIDTTELVRHRRALERNSEELKKANAEITHMALHDDLTGLGNRR 430

Query: 117 AFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
               +L  + E+       ++ +  D+D FKQIND  GH  GD V+   ++++ +V    
Sbjct: 431 YLAKTLEEFTERRQATGGEIAALHIDLDRFKQINDTMGHRAGDDVLVEAANRIRLVLEPA 490

Query: 170 MFVGRLGGEEFAAAAL-GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228
             V R+GG+EF        S    A LAN L K  + S+   +      +  S GIAE  
Sbjct: 491 EAVARIGGDEFVVLVPLSDSSDRPADLANTLLK--DLSRPVRTHDKECRVGASIGIAETP 548

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCF--SDIEN 263
             E +  ++  +D ALY AK  GR R+  +  SD+E+
Sbjct: 549 LSE-VENLLTNSDVALYKAKHRGRGRIEVYDCSDLED 584


>gi|206602907|gb|EDZ39387.1| Putative diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Leptospirillum sp. Group II '5-way CG']
          Length = 884

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 90/204 (44%), Gaps = 10/204 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123
            L E L   I + ++ L    +    +         I +L+  D L+GLLN + F+    
Sbjct: 391 FLAEVLVSPIRNDSLKLTHFLVHMKDVTSEREKEKEIHRLAHQDPLTGLLNRNGFLKRSR 450

Query: 124 -------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                     ++L++ F D+D FK++ND  GH  GD+ +  LS ++  V      +GR+G
Sbjct: 451 EELERNLRSGKRLALAFLDLDGFKELNDTLGHAAGDRFLEILSRRMSEVMEGKGALGRIG 510

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235
           G+EF   A    +     L  DL + +    +    G     T+S G+A        +  
Sbjct: 511 GDEFVVLAEEKDDLLFERLFTDLLEQVSR-PVAFEEGH-FQTTVSVGVAIYPDDGLTVEE 568

Query: 236 IIYRADQALYVAKKSGRNRVVCFS 259
           ++ +AD  +Y AK +G+N +  F 
Sbjct: 569 LLRKADLTMYHAKSAGKNTIRFFE 592


>gi|167033959|ref|YP_001669190.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida GB-1]
 gi|166860447|gb|ABY98854.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida GB-1]
          Length = 847

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 9/179 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQI 142
           S + +   ++ +I  LS  D L+GL N +     L          +++++  D+D FK I
Sbjct: 410 SDITDEVAAHAQIQHLSSHDALTGLPNRNKLFRFLEQSMTGTGPLQVALLILDLDNFKPI 469

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILANDLRK 201
           ND+ GHP GD V+  ++ +L         V RLGG+EF                   L +
Sbjct: 470 NDSLGHPAGDAVLLEVAGRLGQATRDSDLVARLGGDEFIVVVTRPGDHNNMERFCIRLIE 529

Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I+  +     G S+ + +S G+          S +I  AD ALY AK++G+N    FS
Sbjct: 530 AIK--RPMRVEGHSVQVGVSLGVVMSAEYPGTPSDLIRYADVALYNAKQAGKNTWRFFS 586


>gi|152997839|ref|YP_001342674.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150838763|gb|ABR72739.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 556

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 109/246 (44%), Gaps = 25/246 (10%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           FI   I ++ + +  +GL   Y      +  L+  I  +T        +   + ELF ++
Sbjct: 313 FICGFILLSTMIIATLGL---YSYAVKRLRTLTQKINLMTKGSHNLPSNRDEIDELFQAF 369

Query: 98  N-----------RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
           +           R+  LS  D L+ + N  AF   L        S    LSI+  D+DYF
Sbjct: 370 DEFSNTINMQTRRLESLSLTDGLTNIANRRAFDQRLLVELSSDKSSKYDLSILLIDVDYF 429

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           KQ ND +GH  GD+ +  ++  L   +      V R GGEEF      ++ Q+A ++A  
Sbjct: 430 KQYNDTYGHINGDEALQKIASSLESIINKKTDLVARYGGEEFVVILPNTNAQQAEVIAQQ 489

Query: 199 LRKIIENSQINISSGP-SIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRV 255
           ++++I    I   +   +  IT+S GI  R    K    T++  AD ALY +K  GRN+ 
Sbjct: 490 MKQVIGLINIEHKTSKIADAITVSIGIVTRVKNGKTDADTLMKSADIALYHSKTQGRNQA 549

Query: 256 VCFSDI 261
               +I
Sbjct: 550 THIDNI 555


>gi|332533293|ref|ZP_08409159.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037175|gb|EGI73631.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 291

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 11/174 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
              + E  +   ++  ++R D L+GL N S  +  L          N   S++F DI+ F
Sbjct: 112 AHDITERKVMEEQLHYMARHDVLTGLPNRSLLMERLEKVIISAATNNTFFSLLFIDINGF 171

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K +ND  GH  GDK++  ++ +L         VGRLGG+EF       SS  E   + N 
Sbjct: 172 KAVNDTHGHETGDKLLCAIAKRLSASVRHYDTVGRLGGDEFLIILDNLSSSHETVRIKNK 231

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
           +  + E   +       ++I+ S GIA    H +    +I  ADQA+Y  K+ G
Sbjct: 232 V--LTEFKAVFKLDDVLLNISPSIGIANYPEHGQTDHELIKYADQAMYKNKQQG 283


>gi|297155724|gb|ADI05436.1| hypothetical protein SBI_02315 [Streptomyces bingchenggensis BCW-1]
          Length = 695

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 100/216 (46%), Gaps = 20/216 (9%)

Query: 67  ENLSLVIISITISLLL--------GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           ++ S++  ++T++LL                + E  +   R+   +  D L+GL N + F
Sbjct: 215 DDGSVLWTNLTVTLLRDSTGAPQYQLTLAEDITEQRLLRERLRYEATHDELTGLPNRTLF 274

Query: 119 ISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMF 171
           +  L       +  E+  + + D+D FK +ND+ GH  GD+++  ++++L          
Sbjct: 275 LERLDKVLAGEADAERFGVCYLDLDGFKSVNDSLGHIAGDRLLKAVAERLRDCAAAPGEL 334

Query: 172 VGRLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
           + R+GG+EF A   G S +Q+A  LA  +   +   +     G  + +  S G+ +    
Sbjct: 335 LARVGGDEFLALVTGPSAQQDATELARRMLDALA--EPVRVDGRELLVRASIGVVDGPAG 392

Query: 231 E-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           E   + ++  AD  +Y AK +G NR    +D ++N 
Sbjct: 393 ELSRAEVLRSADITMYRAKAAGGNRFEL-ADADSNA 427


>gi|225017148|ref|ZP_03706340.1| hypothetical protein CLOSTMETH_01073 [Clostridium methylpentosum
           DSM 5476]
 gi|224950067|gb|EEG31276.1| hypothetical protein CLOSTMETH_01073 [Clostridium methylpentosum
           DSM 5476]
          Length = 383

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 64/250 (25%), Positives = 108/250 (43%), Gaps = 13/250 (5%)

Query: 22  FSPHTFM-IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL 80
           F P  ++ +Y    F  ++  ++       F   +      E I  +      + I I +
Sbjct: 121 FFPILYITVYLLYLFPFWVINLVMTTVYAAFSTAVLLLKSPEAISYDLFGATTVWI-IGI 179

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVF 133
            L + +  +    + S   +   S +D ++GL N   F   +          +   SI+ 
Sbjct: 180 CLSFWNIDLRLREYESKLELKNASNLDEMTGLPNRRYFNDFIAYKFKESARKSLPFSILI 239

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEA 192
           FDID FK  ND+FGH  GD+ ++ +   ++        F+ R GGEEF A   G   + A
Sbjct: 240 FDIDDFKYYNDSFGHLAGDECLSRIGRVMLDYMIQQDLFIARFGGEEFIAVLAGEDARRA 299

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCH---KEPISTIIYRADQALYVAKK 249
              A +L + I    +  + G S H+T+S G A+  H         +I  AD ALY AK 
Sbjct: 300 QEHAENLIQQIRKCPMPAAFGESTHVTMSVGFAQMEHIGETASFHEVIKNADVALYRAKA 359

Query: 250 SGRNRVVCFS 259
           +G++R+  +S
Sbjct: 360 NGKDRIERYS 369


>gi|254456915|ref|ZP_05070343.1| sensory box sensor/ggdef/eal domain protein [Campylobacterales
           bacterium GD 1]
 gi|207085707|gb|EDZ62991.1| sensory box sensor/ggdef/eal domain protein [Campylobacterales
           bacterium GD 1]
          Length = 633

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 99/212 (46%), Gaps = 16/212 (7%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNH 115
           YG  Y +V    + +I   I  +LGYI    +K   +L  +   +  +S  D L+ L N 
Sbjct: 161 YGCSYDIVILHGVFVIFELI--VLGYIVKKQVKHTVDLITTKKDLEYISMHDTLTNLPNR 218

Query: 116 SAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
            +  + +         +  K +++F D+DYFK IND  GH VGD+++  ++ +L      
Sbjct: 219 HSLNTKIEYITSNANRHKTKFAVIFLDLDYFKNINDTLGHDVGDELLKAVAKKLTSSVRE 278

Query: 169 PMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
              V R+GG+EF   A+   SE +   +  ++  I     I   SG ++ ++ S GI+  
Sbjct: 279 NDIVSRIGGDEFIIIAVDIMSENDILEIVKNILNIFREDII--VSGNTLRLSASLGISIY 336

Query: 228 CHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
                    ++  +D A+Y AK+ GR+    F
Sbjct: 337 PDDSINFIELMKFSDIAMYKAKEQGRDNFNFF 368


>gi|190895007|ref|YP_001985300.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190700668|gb|ACE94750.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 587

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 7/181 (3%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQIND 144
           + KEL  S       +  D L+GLLN  +F           + K++++  D+D+FK+IND
Sbjct: 144 LNKELERSRTEARFAADHDHLTGLLNRRSFDFALSELARQESVKVALLHIDVDHFKEIND 203

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH VGD V+  +S  L+          RLGG+EFA             + + +++ +E
Sbjct: 204 RFGHAVGDLVLCHVSKILLEAISAGDVAARLGGDEFAVVITEDECDRTIAVLDHIQRRLE 263

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
           +         ++ +  S G+A        + ++ ++D ALY AK++GRNR   FSD   +
Sbjct: 264 SPLP--VGDQTLIVRCSIGVASAMSA-DFARLLSQSDLALYHAKRNGRNRAEIFSDEMAS 320

Query: 265 T 265
           T
Sbjct: 321 T 321


>gi|16124993|ref|NP_419557.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15]
 gi|221233714|ref|YP_002516150.1| PAS family GGDEF/EAL protein [Caulobacter crescentus NA1000]
 gi|13421971|gb|AAK22725.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15]
 gi|220962886|gb|ACL94242.1| PAS family GGDEF/EAL protein [Caulobacter crescentus NA1000]
          Length = 842

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 84/187 (44%), Gaps = 12/187 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--------EKLSIVFFDIDY 138
           G+ + +      RIS L+  D L+ L N  + + +LG              +++  D+D+
Sbjct: 379 GADITQAREDQERISHLAHYDVLTQLPNRLSLLQNLGKAWMDHGRDKTSGCAVLCLDLDH 438

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND+ GHPVGD ++  ++ +L    G    V RLGG+EFA     S   EA    + 
Sbjct: 439 FKGVNDSLGHPVGDALLMQVASRLRSCVGETGMVARLGGDEFAVVCAPSPGHEALSALS- 497

Query: 199 LRKIIENSQINISS-GPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            + I+E         G ++ I  S GIA      +    ++  AD ALY AK  GR    
Sbjct: 498 -QSIVETLSAPYDILGHNVLIGASVGIAVAPFDADDPDGLLKNADLALYRAKGDGRGAYR 556

Query: 257 CFSDIEN 263
            F    +
Sbjct: 557 FFETAMD 563


>gi|311033164|ref|ZP_07711254.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus sp. m3-13]
          Length = 542

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 11/176 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEK-LSIVFFDIDYFKQ 141
           I KE      +++  +  D L+ L N       L         NE  L++ F D D+ K+
Sbjct: 364 IEKEREKLQEQLTFQAYHDSLTELPNRRLLEVKLEESLVNVQKNESMLALFFLDCDHLKE 423

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND FGH +GD+++   S +LV+       V RLGG+EF           +   +A+ + 
Sbjct: 424 VNDTFGHEIGDELLIAFSKRLVMSVREGDIVARLGGDEFVILLHEIEDMTQVDKVASRIL 483

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             +  S  NI  G  IH T S GI+    +   +  +  +ADQALY  K +GRN  
Sbjct: 484 TTL-GSPYNIH-GHEIHATSSIGISTYPANGTTVKQLFRQADQALYTVKNAGRNGY 537


>gi|301029766|ref|ZP_07192819.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
 gi|299877373|gb|EFI85584.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
          Length = 476

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 22/258 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LV 66
            + +WL        F+   + I+  +    F A +  I+ +F+    ++ +Y    I +V
Sbjct: 223 MIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVV 282

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             L++++I +            I   L ++ N    ++  D L+ + N + F + L    
Sbjct: 283 SKLTVMVIFMC----------HIFSALRVTKN----IAHRDPLTNIFNRNYFFNELTVQS 328

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +      ++  DID+FK++ND +GHPVGD+VI  + + +         + R+GGEEF 
Sbjct: 329 ASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFG 388

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYR 239
                   + A  LA  +R+ +E    +         +TIS G +  + +    + I   
Sbjct: 389 VLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRL 448

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK++GRN+VV 
Sbjct: 449 ADNALYEAKETGRNKVVV 466


>gi|297582609|ref|YP_003698389.1| diguanylate cyclase [Bacillus selenitireducens MLS10]
 gi|297141066|gb|ADH97823.1| diguanylate cyclase [Bacillus selenitireducens MLS10]
          Length = 534

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 20/201 (9%)

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
            Y L  +L+L+ +  +      ++     K+L I       L+  D L+GL N    +  
Sbjct: 341 HYHLNRDLALLALFFSFYAYSIFMYERKQKQLGI-------LANTDQLTGLFNRHYMMKQ 393

Query: 122 LGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
           L    +K S       ++  DID FK+IND FGH  GD V++     L  + G+     R
Sbjct: 394 LEDNRQKGSGFKQPAILILLDIDRFKRINDEFGHQTGDAVLSETGALLHKLAGSHGTAAR 453

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-- 232
            GGEEF     G ++ E    A  +R  IE           + +T S G++     +   
Sbjct: 454 WGGEEFVLYLPGYAKAEGTAFAEQVRSAIETHAY----SKGLSVTASIGVSSTEDPDTPH 509

Query: 233 ISTIIYRADQALYVAKKSGRN 253
           I  ++ RAD  +Y AK++GRN
Sbjct: 510 IDALVQRADHKMYEAKEAGRN 530


>gi|294649882|ref|ZP_06727282.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|292824256|gb|EFF83059.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 425

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 69/250 (27%), Positives = 111/250 (44%), Gaps = 22/250 (8%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL----------G 83
              + I T   I  +F  Y+     Y L  I    +  +++  +IS++L           
Sbjct: 171 LHMLIIGTCAAIVILFFLYL-FDVSYDLLMIGRTFIGSILLGFSISVMLTSKERRIFIKS 229

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDI 136
            IS    K L +  + +  LS+ D L+ + N   F               + L+++F DI
Sbjct: 230 KISEIDEKILRLQASELLHLSQHDDLTNVSNRRTFEEMCTYYYDLACQEQKPLAVLFIDI 289

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK  ND +GH +GD  I+ ++  +        F+ R GGEEF      +  Q A  +A
Sbjct: 290 DYFKNYNDFYGHQMGDHAISEIAKTIKGSIRHMDFIARYGGEEFVVLLPETPAQGAYAVA 349

Query: 197 NDLRKIIENSQINISSG-PSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRN 253
            ++ + I+   I  +    S H+TIS GI        IS   +I  AD+ALY AK+ GRN
Sbjct: 350 TNIYRAIDRLMIPHAKSLVSNHVTISLGITVFNGNRAISQELLIDTADKALYRAKQLGRN 409

Query: 254 RVVCFSDIEN 263
           ++  +  + N
Sbjct: 410 QI-YYQPLPN 418


>gi|220925196|ref|YP_002500498.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium nodulans ORS 2060]
 gi|219949803|gb|ACL60195.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium nodulans ORS 2060]
          Length = 300

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 67/185 (36%), Positives = 95/185 (51%), Gaps = 10/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDID 137
           Y        +      + +L+  D LSGLLN  AF+  +    E+      L +V  DID
Sbjct: 113 YARLRAADRMTRMQRELIRLAETDMLSGLLNRRAFLQRVTDAAERAGDHGRLGLVLADID 172

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK+IND  GH VGD  I  ++  L         VGRLGGEEF  A  G + +EA   AN
Sbjct: 173 HFKRINDENGHDVGDLAIQGVAQAL--CEIPDGIVGRLGGEEFGIALPGRTLEEAEAAAN 230

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV- 256
            +R    + +   + GP + +T S G++     E ++++  RAD ALY AK  GRNRVV 
Sbjct: 231 RIRLRCTHLRFKGARGP-VQLTCSFGVSAWSEGETVASLHKRADIALYEAKSIGRNRVVS 289

Query: 257 CFSDI 261
            F+D+
Sbjct: 290 AFADL 294


>gi|218781597|ref|YP_002432915.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762981|gb|ACL05447.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 418

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 9/175 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
           +L     R+ +LS  D L+ L N  +F         S       +++   D+D FK +ND
Sbjct: 244 DLLRHIKRVKELSSRDYLTNLFNRRSFFEYGQKLYASAMRDQTVIAVAMLDVDEFKSVND 303

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +FGH  GD+V+  ++D L+  F     V R GG+EF        + E   L   +R  +E
Sbjct: 304 SFGHDAGDEVLKTVADTLMESFRETDIVSRFGGDEFCIIMANPDKNEVPALLERIRTAVE 363

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           N  I +  G  ++++IS G A     + +  +I +ADQ L  AK++G+N V   S
Sbjct: 364 NKYIEV-DGQQVNVSISVG-ACTELCDSLDIMIKKADQMLRQAKRAGKNNVQLIS 416


>gi|104781568|ref|YP_608066.1| diguanylate cyclase [Pseudomonas entomophila L48]
 gi|95110555|emb|CAK15263.1| putative diguanylate cyclase (GGDEF) domain [Pseudomonas
           entomophila L48]
          Length = 375

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 95/192 (49%), Gaps = 14/192 (7%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LG 123
           ++  S+  ++ + Y++ ++++E   +  ++   +  D L+G+ N  AF+           
Sbjct: 184 ILFESMLFAIGISYVTLAMVRER--AEVQLRTAAYSDPLTGIGNRRAFMEHGTHLLHDCA 241

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
           +    ++++  D+D+FK+IND +GHP GD+V+   +++            R+GGEEFA  
Sbjct: 242 AQRVPVALLLCDLDHFKRINDQYGHPKGDQVLLAFAEEARRHLRQGDLFARIGGEEFACL 301

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQ 242
             G  E  A  +A  +        +         + +S GIA +  ++  +S ++  AD 
Sbjct: 302 LPGGDEAAAEHVARRICAAFAALPLLEPGA----LGVSIGIASQPAQQCDLSRLLSMADH 357

Query: 243 ALYVAKKSGRNR 254
           ALY AK+ GR+R
Sbjct: 358 ALYQAKQQGRSR 369


>gi|117919346|ref|YP_868538.1| diguanylate cyclase with PAS/PAC and GAF sensors [Shewanella sp.
           ANA-3]
 gi|117611678|gb|ABK47132.1| diguanylate cyclase with PAS/PAC and GAF sensors [Shewanella sp.
           ANA-3]
          Length = 482

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 13/186 (6%)

Query: 81  LLGYISGSIL--KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131
           L+ ++S  I    E      R+  ++  D L+ L N   F       +S     +   S+
Sbjct: 279 LVEFVSTQIAFAIERRQMLARLEHIALYDQLTHLPNRELFYDRFQKALSRANRESSYFSL 338

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQ 190
           ++ D+D FK +ND +GH VGD ++   + +++        V R GG+EF          Q
Sbjct: 339 LYLDLDKFKWVNDTYGHGVGDLLLQITAQRILGCVRNSDTVARFGGDEFVILLERVDSAQ 398

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
              ++A  + +++ N    + +   IHI  S GIA    H +    ++  AD A+Y AK+
Sbjct: 399 NTLLVAQKILEVL-NHPFELVN-QQIHILPSIGIALYPEHGKDEKQLLSCADSAMYKAKR 456

Query: 250 SGRNRV 255
           +G NRV
Sbjct: 457 NGGNRV 462


>gi|238794196|ref|ZP_04637811.1| Diguanylate cyclase with PAS/PAC sensor [Yersinia intermedia ATCC
           29909]
 gi|238726486|gb|EEQ18025.1| Diguanylate cyclase with PAS/PAC sensor [Yersinia intermedia ATCC
           29909]
          Length = 631

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 12/185 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDI 136
           YI    + EL     R    +  D L+GL N  AF+  L S         + ++++F D+
Sbjct: 449 YILSMDISELKALQQRSDYEANHDILTGLPNRRAFLRQLASSIESSAIAGQYMALLFLDL 508

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-- 194
           D FK+IND  GH  GD V+  ++D L     +  ++ RLGG+EF       S+ EA +  
Sbjct: 509 DDFKKINDTQGHDFGDLVLMAVADLLSETLMSKGYLARLGGDEFTVILSNLSDPEAQVKQ 568

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRN 253
           +  ++   +  S +       IH++IS G      +E   + ++  AD A+Y AK +G+ 
Sbjct: 569 VCENVLSQL--SALVCLGEIEIHLSISIGATICSGREAAGNELLAHADIAMYRAKSAGKG 626

Query: 254 RVVCF 258
               +
Sbjct: 627 SYSIY 631


>gi|218781542|ref|YP_002432860.1| diguanylate cyclase with PAS/PAC sensor [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762926|gb|ACL05392.1| diguanylate cyclase with PAS/PAC sensor [Desulfatibacillum
           alkenivorans AK-01]
          Length = 299

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 7/171 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNF 146
                 + QL  ID L+ L N          F++    Y+    ++F D+D+FK +ND F
Sbjct: 128 QARIKELEQLVLIDNLTMLSNRRHVEAELDRFLTEKQRYDLSFGVLFLDLDHFKNVNDTF 187

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD V+  +   L          GR GGEEF              L   +R ++  +
Sbjct: 188 GHNVGDLVLKTVGATLKSCARPYDTFGRWGGEEFIGLIRNIDAPNLRGLGERIRGLVAAT 247

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            IN   G ++ +T S G      ++ + +II RAD+ LY +K SGRN +  
Sbjct: 248 MINTPCGKTLQVTASIGGTTARQEDDMESIIARADKNLYCSKNSGRNCLTL 298


>gi|167585855|ref|ZP_02378243.1| diguanylate cyclase/phosphodiesterase [Burkholderia ubonensis Bu]
          Length = 779

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVIIS-ITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +Y    N+ L++ S IT+++L  + ++  ++ +L      ++QL+  D L+GL N  A +
Sbjct: 291 DYNHTRNVYLLMTSFITLAMLAFFGVATGLIGKLLGREREMTQLAEYDLLTGLANRYATL 350

Query: 120 SSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
             L       S   +L ++F D+D FK +ND  GH  GD V+   + +L    G    + 
Sbjct: 351 RGLRNDVSMPSSLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTASRLADAVGDEGALS 410

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EF     G   E+ A  LA  + ++    +     G S  +  S GIA      E
Sbjct: 411 RIGGDEFVVVMKGDDVERRAVRLAEAIIRMF--GEPFDVRGSSFVLHASIGIALHTVANE 468

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +AD A+Y AK +G+N    ++
Sbjct: 469 SEIDLLKKADLAMYSAKDAGKNCYQFYA 496


>gi|161621454|ref|NP_102571.2| response regulator PleD [Mesorhizobium loti MAFF303099]
          Length = 457

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 9/175 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           +L  S  +  +++  D L+GL N     S L        +    LS++  D+D FK IND
Sbjct: 280 QLRASVTQTIEMAVTDGLTGLHNRRYLDSHLQTLFDRAVARRRPLSVMITDLDRFKSIND 339

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+V+   + +L           R GGEEF      +    A  +A  +R  I 
Sbjct: 340 AHGHDGGDEVLREFARRLRKNVRGIDLACRFGGEEFVVVMPDTDGAVAEKVAERIRAEIA 399

Query: 205 NSQINI-SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
                I + G +I +T+S G++      + ++ ++ RAD ALY AK  GRNRVV 
Sbjct: 400 QKPFAIGADGKTIEVTVSVGVSSVLKGVDTVAALMKRADLALYEAKSGGRNRVVA 454


>gi|330831552|ref|YP_004394504.1| GGDEF domain-containing protein [Aeromonas veronii B565]
 gi|328806688|gb|AEB51887.1| GGDEF domain protein [Aeromonas veronii B565]
          Length = 371

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 11/192 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KL 129
             SL   + +  ++ EL      +   SR+D L+G+ N +    SL             L
Sbjct: 173 IASLHHRFSNAELVAELKAVSEHLRLTSRLDGLTGIANRAHLDDSLERAWRRCHRARAPL 232

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSS 188
           S+V  D+DYFKQ ND +GH +GD  +  ++  L  V      +  R GGEEFA     + 
Sbjct: 233 SLVLVDVDYFKQFNDLYGHQLGDDCLQQVAGLLAEVERREDDLAARYGGEEFALLLPCTG 292

Query: 189 EQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAERCHKEP--ISTIIYRADQALY 245
            Q A  +A+++R+ ++   I       S  +T S G+A         I+ +I +AD ALY
Sbjct: 293 MQGALQVADNVRQALKELAIPHQKSLVSGRVTCSFGVATLIPDNSMKIADLIQKADAALY 352

Query: 246 VAKKSGRNRVVC 257
            AK +GR+R+  
Sbjct: 353 QAKHNGRDRIEV 364


>gi|296283401|ref|ZP_06861399.1| diguanylate cyclase [Citromicrobium bathyomarinum JL354]
          Length = 418

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 65/258 (25%), Positives = 108/258 (41%), Gaps = 26/258 (10%)

Query: 28  MIYFSIFFSI-FIATVIFIANIFLF-YIGLTPFYGLEYILVENLSL-VIISITISLLLGY 84
           +IY ++  ++ F   V+F A       + L    GLE  L   L++ ++ +   SL   Y
Sbjct: 138 VIYANMLLALRFPHAVLFTAGAMAISLLILATRSGLEPSLAVALAIQMVTACAFSLFANY 197

Query: 85  ISGSI-----LKELFISYNR---------ISQLSRIDCLSGLLNHSAFISSLGSY---NE 127
                     +  L  +              +LS  D L+ L N       L  +     
Sbjct: 198 RHERRRCADFMTALLATQEASDAKAVSKTYLRLSLTDALTRLPNRRLLTERLERWLASRR 257

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV--FGTPMFVGRLGGEEFAAAAL 185
            ++++  DID+FK  ND  GH  GD  +  ++++   +      +   R GGEEF  A  
Sbjct: 258 PVALMMIDIDHFKPYNDTLGHTAGDDCLQMVANRFSQIAAQTKGVLCARYGGEEFTFALR 317

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIH--ITISAGIAERCHKEP--ISTIIYRAD 241
            S ++    +A  + + IE+  I     P     IT+S G+A+  + E      ++  AD
Sbjct: 318 DSDQKRLVSVARTISQAIEDLAIPHPGRPDGTAIITVSVGVAQCRNGETCAFKDLVNAAD 377

Query: 242 QALYVAKKSGRNRVVCFS 259
           +ALY AK  GRNRV  + 
Sbjct: 378 RALYAAKTKGRNRVAMYE 395


>gi|260775425|ref|ZP_05884322.1| C-di-GMP phosphodiesterase A-related protein [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608606|gb|EEX34771.1| C-di-GMP phosphodiesterase A-related protein [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 653

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 10/183 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           + K+   +  +++QL+  D L+GL N S  +  L          N    + + D+D FK 
Sbjct: 197 LWKDREAAEAKLNQLAYYDSLTGLANRSLLLQMLEEAIDNANKTNTSGVLFYLDLDRFKT 256

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH +GD +I  +S ++           R+GG+EFA      S  +A   A  L  
Sbjct: 257 INDSLGHTIGDHLIKAISKRIEAWLIDDYTAARIGGDEFAILMPSISADKAHETAQQLLA 316

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSD 260
           +I N          ++ T S GI+        +  ++ +AD ALY AK +GRN+ + +  
Sbjct: 317 LISN--PYSIDDHLLYCTTSVGISIFPSVNSTNIDVLRQADTALYRAKVAGRNKYMFYEP 374

Query: 261 IEN 263
              
Sbjct: 375 EMQ 377


>gi|261340977|ref|ZP_05968835.1| YaiC/YhcK/ArdA family protein [Enterobacter cancerogenus ATCC
           35316]
 gi|288316842|gb|EFC55780.1| YaiC/YhcK/ArdA family protein [Enterobacter cancerogenus ATCC
           35316]
          Length = 367

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 61/237 (25%), Positives = 102/237 (43%), Gaps = 21/237 (8%)

Query: 35  FSIFIATVIFIANIFLFYIGLT------PFYGLEYILVENLSLVIISITISLLLGYISGS 88
           F +F+   I      L  + LT         GLE+ L      + + I   +L  ++S  
Sbjct: 136 FRLFLTGTILAVLSALITLHLTGNIITFAPGGLEWGLT-----LPVLILYPMLFAWVSHQ 190

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQ 141
               L     R+  +S  D ++G+ N   +              + + +I+  DID+FK 
Sbjct: 191 TAIRLAEHKRRLELMSSRDGMTGVYNRRHWENLLRNEYEQCRRSHREATILLIDIDHFKG 250

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH VGD+ I  ++ QL +      F+GR GG+EFA    G+  + A    + + +
Sbjct: 251 INDTWGHDVGDEAIIAITRQLQMSLRAGDFIGRFGGDEFAVIMSGTPAESAIAAMSRVHE 310

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
            + +  +  + G  + I  S G+A    +       +  AD ALY AK +GR R   
Sbjct: 311 RLNHMTLPRAPGVRLRI--SVGVAPWRTQFGHYREWLKAADVALYKAKNAGRGRTEV 365


>gi|259907284|ref|YP_002647640.1| HmsT (Hemin storage system protein) [Erwinia pyrifoliae Ep1/96]
 gi|224962906|emb|CAX54387.1| HmsT (Hemin storage system protein) [Erwinia pyrifoliae Ep1/96]
 gi|283477102|emb|CAY73002.1| Uncharacterized protein yhcK [Erwinia pyrifoliae DSM 12163]
          Length = 365

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 7/186 (3%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG----SYNEKLSIVFFDIDYFK 140
            +  ++++L+        LS +D L+GL N     + L      +     ++  DID+FK
Sbjct: 172 FTRRLVRQLYEEKETYCDLSMLDPLTGLYNRRGLKNRLADILDKHMGNHYVMLLDIDHFK 231

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
             NDN+GH +GD+ +  +S  +     +   V R GGEEF      ++E  A   A  +R
Sbjct: 232 AYNDNYGHAMGDQALTRVSVAIRDAVRSRDIVTRYGGEEFLVLLTNATESMAIKQAERIR 291

Query: 201 KIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + +   +I       +  H+TIS GIA     +     +  AD+ALY+AK  GRNRV+  
Sbjct: 292 EFVLGLEIPHRFNNKVATHVTISVGIAPLM-ADDFDKALAHADRALYLAKSRGRNRVIHL 350

Query: 259 SDIENN 264
            D  N 
Sbjct: 351 QDALNR 356


>gi|113866435|ref|YP_724924.1| hypothetical protein H16_A0406 [Ralstonia eutropha H16]
 gi|113525211|emb|CAJ91556.1| Hypothetical protein with GGDEF domain [Ralstonia eutropha H16]
          Length = 390

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +      D L+ L    +  +           + LS++  D+D+FK INDN+GH  GD V
Sbjct: 219 LRHERDTDPLTQLHTRRSLEALAAREIPPPQGKPLSVLLCDLDFFKFINDNYGHSAGDAV 278

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +A +   +           RLGGEEF      +    A  LA  LR+ +E++++++  G 
Sbjct: 279 LAQIGRIIAAGIRRRDIAARLGGEEFVVLLPDTPPDAALHLAERLRQTLESTEMDVLPGM 338

Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
              +T S G+A     E +  ++ RAD  LY AK  GRN V
Sbjct: 339 H-TVTASFGVATLRPGEDLEALLMRADNVLYAAKNKGRNCV 378


>gi|313682082|ref|YP_004059820.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
 gi|313154942|gb|ADR33620.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994]
          Length = 307

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 63/183 (34%), Positives = 90/183 (49%), Gaps = 18/183 (9%)

Query: 92  ELFISYNRISQLSR----------IDCLSGLLNHSAFISSLGSY-----NEKLS--IVFF 134
           EL  + ++I +LS           ID L+ + N    I  L +      N+ LS  ++  
Sbjct: 124 ELKKAQSKIDELSTELNETVSLLTIDPLTKVTNRKGLIDDLNNALQIGKNKALSIILLMI 183

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D D FK IND  GH  GD+V+ F +  +  V      V R GGEEF      S +++A  
Sbjct: 184 DADDFKLINDQHGHLAGDRVLYFFAQSIKSVIRPGDKVYRYGGEEFTVVLHQSDKEQAYS 243

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           LA+ +R  IE SQ+ I SG +I +T+S G       +     + RAD ALY AKK G+NR
Sbjct: 244 LADKIRSKIEQSQL-IYSGKTIKMTVSVGATVHHQGDSYDDFVGRADDALYRAKKEGKNR 302

Query: 255 VVC 257
            + 
Sbjct: 303 TIL 305


>gi|311280752|ref|YP_003942983.1| diguanylate cyclase [Enterobacter cloacae SCF1]
 gi|308749947|gb|ADO49699.1| diguanylate cyclase [Enterobacter cloacae SCF1]
          Length = 565

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 7/176 (3%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFK 140
           G  L+E       + + S  D L+ L N  AF +   +  ++ S      ++  D+D FK
Sbjct: 388 GDKLQEQTRLSRTLKRQSEEDPLTHLYNRRAFDARATALLQQASHHFPAWLIMLDVDRFK 447

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GHP GD+V+  L+  L         +GRLGGEEFA        +  A     ++
Sbjct: 448 SINDTWGHPTGDEVLVGLATTLKTFSRPGDVIGRLGGEEFAVMFRAQGHESVAGYTQRIQ 507

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             I        +G    IT S G++    + P+S ++  AD ALY AK SGR+R+ 
Sbjct: 508 AEIRKLAFQGPNGEPFQITASFGVSVGWQR-PLSELMSEADAALYEAKNSGRDRIC 562


>gi|238025892|ref|YP_002910123.1| diguanylate cyclase [Burkholderia glumae BGR1]
 gi|237875086|gb|ACR27419.1| Diguanylate cyclase [Burkholderia glumae BGR1]
          Length = 362

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 53/180 (29%), Positives = 77/180 (42%), Gaps = 15/180 (8%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           +EL ++   + +LS+ D L+ L N     + L            +LS++  D+D FKQ N
Sbjct: 183 EELLLANRELERLSQSDGLTSLPNRRYLDAYLEGEWRRSLREGAELSMLMIDVDRFKQYN 242

Query: 144 DNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD V+  +   L            R GGEEF     G+    A ++A  +R  
Sbjct: 243 DTYGHVAGDDVLRQVGAALQRCMSRPGDLAARFGGEEFGVVLPGTPAGGARLVAEKIRLA 302

Query: 203 IENSQINISSGPSIHI-TISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   Q+  S G +  I T+S G    IA                 ALY AK+ GRNR V 
Sbjct: 303 VAAMQVPHSGGAADGIVTVSIGGACTIATPSGSTTALLEAAD--AALYEAKRGGRNRAVI 360


>gi|327396683|dbj|BAK14104.1| diguanylate cyclase/phosphodiesterase [Pantoea ananatis AJ13355]
          Length = 552

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 7/173 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R + L+  D L+GLLN    +  L +    +E  +++  DID FK +ND  GH  GD ++
Sbjct: 269 RANHLALHDPLTGLLNRRGLMPELETLLDGDEPFAVMVSDIDRFKSVNDVLGHAAGDTLL 328

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGP 214
             +S +L+ V      + R GG+EF A   G SS ++A+  A+ L  +++  +  +  G 
Sbjct: 329 IEVSARLLSVLRPGDILARTGGDEFVAVLPGISSAEDASETASRLTMVLK--EPFMLKGR 386

Query: 215 SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            +    S G+     +     +++  AD ALY AK +GR   V F+D   ++ 
Sbjct: 387 KVTSGCSFGVCLFPGYARDAESMLSAADIALYAAKSAGRKGWVIFTDELASSA 439


>gi|271501614|ref|YP_003334640.1| PAS/PAC and GAF sensor-containing diguanylate cyclase [Dickeya
           dadantii Ech586]
 gi|270345169|gb|ACZ77934.1| diguanylate cyclase with PAS/PAC and GAF sensors [Dickeya dadantii
           Ech586]
          Length = 505

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 11/178 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L  S     QL+  D L+ L N   F   +            K++++F D+D FKQIND 
Sbjct: 326 LRRSEEHYRQLAHYDSLTSLANGLTFAEQMEQAIQLSRQTGRKIALMFLDLDKFKQINDT 385

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIE 204
           FGH  GD ++   + ++         V R  G+EF     G  E +    +A+ +   + 
Sbjct: 386 FGHATGDLLLKEAAARMRGAVRETDTVYRRSGDEFIILLQGIKEVENTLYVADKIHHAL- 444

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            ++     G  + I+ S GIA    H     T+   AD A+Y AK  GR++   + D+
Sbjct: 445 -NEPFYIEGKKLDISCSIGIALYPEHGTDSLTLAINADAAMYQAKALGRSQTQIYHDL 501


>gi|226354940|ref|YP_002784680.1| response regulator CheY [Deinococcus deserti VCD115]
 gi|226316930|gb|ACO44926.1| putative response regulator, CheY, Guanylate cyclase, GGDEF domain
           with PAS/PAC sensor and Response Regulator Receiver
           modulation [Deinococcus deserti VCD115]
          Length = 448

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 7/172 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQ 141
           + + +   +   +   +  D L+GL N + F+  L     +       ++ F D+D FK 
Sbjct: 268 TDVTDRVNTQRELEHRAYTDILTGLANRAQFMMELKQEAAQPESQGLFALAFIDLDGFKA 327

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH  GD+++  ++ +L  V        RL G+EF           A  L    R 
Sbjct: 328 INDCFGHEAGDELLRQVAQRLRGVVRNVDLAARLAGDEFVLLLRHVDSDAALELIAQ-RT 386

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           +            S+ +  S G+      E    ++ RADQA+Y  K+ G+N
Sbjct: 387 LAAFQPAFELEAFSVTVHASVGLVRHRPGESAVQMLSRADQAMYQTKRQGKN 438


>gi|149193829|ref|ZP_01870927.1| diguanylate cyclase [Caminibacter mediatlanticus TB-2]
 gi|149135782|gb|EDM24260.1| diguanylate cyclase [Caminibacter mediatlanticus TB-2]
          Length = 350

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 12/165 (7%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + + +  D L+ L N   F + +           +  S +  DID FK+IND +GH +GD
Sbjct: 188 LEKSTITDPLTKLYNRLYFNNQINYLKNQYERNKKPFSAMLIDIDNFKKINDTYGHHIGD 247

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  ++  +           R GGEEF      + + +A  +A  +RK IE+S I    
Sbjct: 248 EVLKNVAKIIKTTIRKTDIACRYGGEEFIILLPETEKSKAKEIAERIRKKIESS-IQYDD 306

Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
            P   +TISAG+ E   K + I   I+  D+ LYVAK++G+N+++
Sbjct: 307 NP---VTISAGVGEFNEKYKTIHHFIHDVDEGLYVAKRTGKNKII 348


>gi|253996466|ref|YP_003048530.1| PAS/PAC/GAF sensor-containing diguanylate cyclase [Methylotenera
           mobilis JLW8]
 gi|253983145|gb|ACT48003.1| diguanylate cyclase with PAS/PAC and GAF sensors [Methylotenera
           mobilis JLW8]
          Length = 481

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 13/190 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
           Y     +    +   ++  L+  D L+G+ N S F ++L          ++ L++++ DI
Sbjct: 127 YAFIQDISNRKVEEQKLRSLASNDTLTGIRNRSYFNANLPEAMARSKRSDKNLALMYLDI 186

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAIL 195
           D+FK IND+ GH  GD ++   + +L         V RLGG+EF     G  +  + + +
Sbjct: 187 DHFKSINDSLGHEAGDSLLKEFATRLKATLREADIVSRLGGDEFTVIIEGIATLDDVSKV 246

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN- 253
           A ++  I E ++ N    P+  IT S GIA    +      ++  AD+A+Y AK SGRN 
Sbjct: 247 ATNI--INELNRGNWLDTPNFKITSSIGIAIYDGRVIDADKLVALADKAMYKAKHSGRNN 304

Query: 254 -RVVCFSDIE 262
            +++ F DIE
Sbjct: 305 FKILRFDDIE 314


>gi|329904556|ref|ZP_08273862.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Oxalobacteraceae bacterium IMCC9480]
 gi|327547916|gb|EGF32666.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Oxalobacteraceae bacterium IMCC9480]
          Length = 806

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 55/211 (26%), Positives = 85/211 (40%), Gaps = 10/211 (4%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           L   +G EY  VE+ +  I      +    +    +      +      SR D L+GL N
Sbjct: 344 LIARHGAEYA-VEDSAAPIFGADRLVSGAVMVFRDVTPQRKLHQEAEHRSRHDHLTGLPN 402

Query: 115 HSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
              F   L          + + ++ F D+D FK +ND+ GH  GD ++  +SD L     
Sbjct: 403 RREFEHLLEQLFVSARSEDVEHALCFIDLDRFKAVNDSCGHAAGDLLLKKVSDLLRQCVR 462

Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227
               V RLGG+EFA          A  +A D+   + + +  +  G    I  S G+   
Sbjct: 463 ATDKVARLGGDEFAVLLQHCDLATARQIAQDICDHMADMRF-LFDGKQFDIGASIGVVVL 521

Query: 228 CHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
                  S +   ADQA + AK +GR +V  
Sbjct: 522 DGSWSSTSQVQQAADQACFAAKAAGRGQVQV 552


>gi|222640395|gb|EEE68527.1| hypothetical protein OsJ_26969 [Oryza sativa Japonica Group]
          Length = 1502

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 87/180 (48%), Gaps = 9/180 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
            + +       I   +  D L+GL+N       L              ++ + ++D+FK 
Sbjct: 324 DVSQNHALAREIEHHASHDPLTGLINRREIERLLERALLQVRSEGGTHALCYINLDHFKL 383

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND+FGH  GD+++   ++ LV       +VGRLG +EFA     + + EA  +   + +
Sbjct: 384 VNDSFGHAAGDQMLRSFAEYLVAAVRDGDWVGRLGADEFAVFLAHAGQDEAKRVLQRVIR 443

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +  +   +S G S  ++ S G+ E       ++ ++  AD A Y AK++GRNRV CF++
Sbjct: 444 NLGQATFLVSEG-SPQLSCSIGVVEVSADAPDVNWLMSAADSACYAAKQAGRNRVHCFNE 502



 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/102 (35%), Positives = 48/102 (47%), Gaps = 10/102 (9%)

Query: 59   YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
            + LEY  VE L L +  +   ++  Y     L  L    + + QL+  D L+GL N  A 
Sbjct: 1120 WLLEY-RVEALQLAVTWLL--MMAAYALNQRLGRLRQQRDELRQLAETDGLTGLPNRRAG 1176

Query: 119  ISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDK 153
            +  L  + E        L I F DID FK IND  GH VGD+
Sbjct: 1177 LQQLARHLERVDRERGPLVIGFLDIDLFKDINDRHGHAVGDQ 1218


>gi|192362182|ref|YP_001981698.1| GGDEF domain-containing protein [Cellvibrio japonicus Ueda107]
 gi|190688347|gb|ACE86025.1| GGDEF domain protein [Cellvibrio japonicus Ueda107]
          Length = 387

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 110/238 (46%), Gaps = 14/238 (5%)

Query: 38  FIATVIFIANIFLFYIGLTP---FYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
            +  V  +  + + +    P   F+    ++   +  +++ +    LL  +     K L 
Sbjct: 149 LMLVVSVVCGLLVLHWATFPSIFFFPTWKVIGFGVGTLLVLVQYLGLLASVLLQFQKRLL 208

Query: 95  ISYNRISQLSRIDCLSGLLNHSA----FISSL---GSYNEKLSIVFFDIDYFKQINDNFG 147
            +  +  +L+  D L+GL N       F  +L      ++ L++++ D+D FK IND+ G
Sbjct: 209 DAEEKALELAYRDPLTGLNNKHYLSNLFEQALLLATRPHQLLAVIYIDLDNFKPINDSAG 268

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENS 206
           H  GD+V+  ++ +L     +     R+GG+EF   A       +   +AN L + +   
Sbjct: 269 HKTGDEVLKEVAKRLKEYTRSTDISARIGGDEFIVIATQLDHIDQINTIANKLLQQL-TR 327

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +I +     + +  S GI+    H + ++++I  AD+A+Y  K+SG+N  V + +  +
Sbjct: 328 EIQVDDNTYV-LGASIGISFYPAHGDNLASLIEAADEAMYHVKRSGKNGYVVYGENMS 384


>gi|209886616|ref|YP_002290473.1| ggdef domain [Oligotropha carboxidovorans OM5]
 gi|209874812|gb|ACI94608.1| ggdef domain [Oligotropha carboxidovorans OM5]
          Length = 649

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQI 142
           + ++L IS   +   +  D L+GL N +               + K++  F D+D FKQ+
Sbjct: 194 LTEQLKISQEALRFRANFDALTGLPNRTHIQELVDDLIRTADDDRKVAFAFLDLDDFKQV 253

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRK 201
           ND+ GH +GD+++  ++ ++     +    GR+ G+EF        ++ +A+ L + +R 
Sbjct: 254 NDHHGHAIGDELLRQIAKRVKSEIRSTDIFGRISGDEFVIILNPVDQRSDASALISRVRS 313

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++  +     G  I  + S G+A    H     T+   AD A+Y AK S +  V  F+
Sbjct: 314 RLK--RPFRIEGVGIKTSASIGVALYPDHGRDYDTLRRHADMAMYRAKSSSKGGVAFFN 370


>gi|168183066|ref|ZP_02617730.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum Bf]
 gi|237794497|ref|YP_002862049.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum Ba4 str. 657]
 gi|182673756|gb|EDT85717.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum Bf]
 gi|229262531|gb|ACQ53564.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum Ba4 str. 657]
          Length = 419

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 90/182 (49%), Gaps = 11/182 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
             + E  I  ++  Q++  D L+ L N ++F+  L             L+I+F D+D FK
Sbjct: 240 RDITERKIYNDKTKQMAYFDSLTELPNRNSFLKQLEHEIKLSRKKQNLLAIMFLDLDKFK 299

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
           ++NDNFGH  GDK++  ++ ++     +   + R GG+EF       + E++   LA D+
Sbjct: 300 EVNDNFGHCTGDKLLWQVAKRVKKTISSKDLIARFGGDEFTILIRNIAHEKQVEDLARDI 359

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            ++ +  +     G  ++I  S GI+           +I +AD+A+Y AKK G N+   +
Sbjct: 360 IEVFK--EPICIEGIYVNIKTSIGISFFPKDGHTSQELIKKADKAMYDAKKRGSNKFQIY 417

Query: 259 SD 260
            D
Sbjct: 418 KD 419


>gi|73749065|ref|YP_308304.1| GGDEF domain-containing protein [Dehalococcoides sp. CBDB1]
 gi|73660781|emb|CAI83388.1| GGDEF domain [Dehalococcoides sp. CBDB1]
          Length = 792

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 89/185 (48%), Gaps = 12/185 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           ++ E    Y + +  +  D L+ L NH  F   +         +    S++  D+D FK 
Sbjct: 402 VIIENAQLYTQATIRANTDELTRLYNHRHFHERIEQEIARGSRFGNTFSLILLDLDLFKV 461

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            ND +GH  GD+++  L   L     +     R GGEEFA    G+  ++A  +A  +RK
Sbjct: 462 YNDVYGHLAGDQLLRRLGKILENSIRSIDMAFRYGGEEFAIMLPGTKIEDAYHVAERIRK 521

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFSD 260
            IE+     SS   + IT S G+A       +   II +AD ALY +K++GRNR    +D
Sbjct: 522 NIESK----SSFRDMPITASLGLANWPTDGVMKEEIIAKADAALYRSKETGRNRTSLPAD 577

Query: 261 IENNT 265
           + NN+
Sbjct: 578 LNNNS 582


>gi|307720880|ref|YP_003892020.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurimonas autotrophica DSM 16294]
 gi|306978973|gb|ADN09008.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurimonas autotrophica DSM 16294]
          Length = 762

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 86/191 (45%), Gaps = 16/191 (8%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           + +     +  +    ++ D L+ + N S  +  +         +N    ++F D+D+FK
Sbjct: 307 TDITHRIQTQLQFEHQAKHDTLTDIANRSLLLEKIEQEIIRYKRHNIIFGVIFLDLDHFK 366

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ------EAAI 194
            IND+ GH VGD+++   + +L  V      + R+GG+EF       + +       A  
Sbjct: 367 NINDSLGHAVGDELLIQTAHRLKDVIRVEDTIARIGGDEFVILLPDLANEMQFAATNAER 426

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253
           +A  +  I+  S     +  +++++ S GIA   +  +    I+  AD A+Y AKK+GRN
Sbjct: 427 IAEKIHNILSKS--FKINDLTLNVSASLGIAFIGNGSQSPDDILKYADIAMYEAKKAGRN 484

Query: 254 RVVCFSDIENN 264
               +    + 
Sbjct: 485 TTKFYQHKMDE 495


>gi|297539234|ref|YP_003675003.1| GAF sensor-containing diguanylate cyclase [Methylotenera sp. 301]
 gi|297258581|gb|ADI30426.1| diguanylate cyclase with GAF sensor [Methylotenera sp. 301]
          Length = 329

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 100/219 (45%), Gaps = 15/219 (6%)

Query: 46  ANIFLFYIGLTPF----YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR-- 99
           A    FY G        Y L  I V + S   +S T  L+L  +S  ++  L   Y    
Sbjct: 112 APYLRFYAGAALIDPQGYALGTIAVVDTSPRTLSETQGLMLKDLSKLVITALESRYRAIL 171

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+GL N + F  +L S         +  ++ + D+D FK IND +GH  GD
Sbjct: 172 LENLAMTDHLTGLANRARFERTLNSEIAHFRVTGKSFTVFYMDLDNFKIINDTYGHSAGD 231

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  ++  +     T     RLGG+EF       ++     LA  +   +    I +++
Sbjct: 232 EVLVEVAHLISKQVRTEDLPARLGGDEFGIFMREDNKGLTESLAKRIVDTV-TKPITLTT 290

Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250
           G  + I IS GIA      + + T++  ADQALY+ K++
Sbjct: 291 GHQVSIGISIGIATYSDDTQTVDTLMGLADQALYIDKRN 329


>gi|291619602|ref|YP_003522344.1| YciR [Pantoea ananatis LMG 20103]
 gi|291154632|gb|ADD79216.1| YciR [Pantoea ananatis LMG 20103]
          Length = 685

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 7/173 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R + L+  D L+GLLN    +  L +    +E  +++  DID FK +ND  GH  GD ++
Sbjct: 269 RANHLALHDPLTGLLNRRGLMPELETLLDGDEPFAVMVSDIDRFKSVNDVLGHAAGDTLL 328

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGP 214
             +S +L+ V      + R GG+EF A   G SS ++A+  A+ L  +++  +  +  G 
Sbjct: 329 IEVSARLLSVLRPGDILARTGGDEFVAVLPGISSAEDASETASRLTMVLK--EPFMLKGR 386

Query: 215 SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            +    S G+     +     +++  AD ALY AK +GR   V F+D   ++ 
Sbjct: 387 KVTSGCSFGVCLFPGYARDAESMLSAADIALYAAKSAGRKGWVIFTDELASSA 439


>gi|288957165|ref|YP_003447506.1| diguanylate cyclase [Azospirillum sp. B510]
 gi|288909473|dbj|BAI70962.1| diguanylate cyclase [Azospirillum sp. B510]
          Length = 302

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 12/180 (6%)

Query: 91  KELFISYNRISQL-----SRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138
           +E  +   R+ +      S +D L+GL        +L           +   +   DID 
Sbjct: 106 EEFMLHLRRMERAFAAAASGLDPLTGLRTRRGMGEALEREHNRYRRTGQPFCVALCDIDK 165

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND++GH +GD+V+A  +  +     +     R+GGEEF      +   E   +   
Sbjct: 166 FKGINDSYGHDIGDRVLAATAAVISRGVRSFDEAFRMGGEEFLVCLKETGLDEGHAVIER 225

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           LR  +  S + +  G  I +T S G+ E      +  ++  AD+ALY AK SGRNRV+ +
Sbjct: 226 LRVDLMRSPVVLPDGRMIPVTASFGLVEAVADLTVEDLVVCADRALYQAKNSGRNRVIRY 285


>gi|326318167|ref|YP_004235839.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375003|gb|ADX47272.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 886

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 12/192 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136
            I+   + ++  +   I  L+  D L+GL N    +  L          ++  +++F D+
Sbjct: 430 MITYHDVTDMRRASAEIENLAFYDPLTGLPNRRLLLDRLHQALATAQRSHQFGALLFLDL 489

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAI 194
           D FK +ND  GH +GD ++  ++ +L V       V RLGG+EF      L    QEAA 
Sbjct: 490 DQFKTLNDTQGHEMGDLLLQQVALRLRVCARPADTVARLGGDEFVVMMSDLSHDRQEAAT 549

Query: 195 LANDLRKII--ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSG 251
           +A  + + I    +Q           T S G A    + +  + ++ +AD A+Y  K   
Sbjct: 550 IARRIGEKILHAVAQPYHLQQQMHQNTCSVGAAIFGDQRQTAADLLKQADIAMYQVKAQR 609

Query: 252 RNRVVCFSDIEN 263
            N +  F     
Sbjct: 610 GNALCFFDPQMQ 621


>gi|242240196|ref|YP_002988377.1| diguanylate cyclase with PAS/PAC and GAF sensors [Dickeya dadantii
           Ech703]
 gi|242132253|gb|ACS86555.1| diguanylate cyclase with PAS/PAC and GAF sensors [Dickeya dadantii
           Ech703]
          Length = 506

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 12/182 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L  S     QL+  D L+ L N   F   +            K++++F D+D FKQIND 
Sbjct: 326 LRRSEEHYRQLAHYDSLTSLANGLTFAEQMEQAIQLSKQTGRKIALMFLDLDKFKQINDT 385

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIE 204
           FGH  GD ++   + ++         V R  G+EF     G  E +    +A+ +   + 
Sbjct: 386 FGHATGDLLLKEAAVRMRSAVRDTDTVYRRSGDEFIILLQGIKEIENTLYVADKIHHAL- 444

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            ++     G  + I+ S GIA    H     T+   AD A+Y AK  GR++   + D+ N
Sbjct: 445 -NEPFFIEGKKLDISCSIGIALYPEHGTDSLTLAINADAAMYQAKALGRSQTQIYHDL-N 502

Query: 264 NT 265
           +T
Sbjct: 503 ST 504


>gi|153836012|ref|ZP_01988679.1| ScrC [Vibrio parahaemolyticus AQ3810]
 gi|260901150|ref|ZP_05909545.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AQ4037]
 gi|149750766|gb|EDM61511.1| ScrC [Vibrio parahaemolyticus AQ3810]
 gi|308109338|gb|EFO46878.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AQ4037]
          Length = 774

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 11/184 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           ++    S   ++  ++ D L+ L N S     L            K+ ++F D+D+FKQI
Sbjct: 333 IERRKASEKELAFQAKYDTLTELPNRSYGSERLALELIRASRTGSKVLVMFIDLDHFKQI 392

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRK 201
           ND+ GH VGD+++   + +L  V      + R+GG+EF            A  +A+ +  
Sbjct: 393 NDSMGHFVGDEILKLSAQRLQNVARKTDLLARIGGDEFLLVIPDLPDNDTAKRVASSVLS 452

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
               S+  + +     +T S G++      +    ++  AD A+Y  K+ GR+    ++ 
Sbjct: 453 AF--SEPFVWNNHEFFLTGSVGMSVFPDDGDNAEQLLACADMAMYRVKQDGRDAFCFYNH 510

Query: 261 IENN 264
             N 
Sbjct: 511 NMNQ 514


>gi|148557273|ref|YP_001264855.1| diguanylate cyclase [Sphingomonas wittichii RW1]
 gi|148502463|gb|ABQ70717.1| diguanylate cyclase [Sphingomonas wittichii RW1]
          Length = 419

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 71/235 (30%), Positives = 103/235 (43%), Gaps = 19/235 (8%)

Query: 33  IFFSIFIATVIFIANIFLFYIG--LTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
           IF    +A V     I L  +G   +      Y  +  L L  +++   +   Y+ G  L
Sbjct: 186 IFTCFGLAAVELAGGIVLAAMGNGESAVLDRAYTYIVFLGLPAMTVGAGIFSLYLMGGDL 245

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQIN 143
            E      ++   +  D L+G  N  A        +    +    LSI   D+D+FK+IN
Sbjct: 246 AE------KLRLTAETDSLTGAPNRRAVEAAGSRMMEEARATGRPLSIAICDVDHFKEIN 299

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+V+  L+D      G     GR GGEEF     GS  + A IL   LR  I
Sbjct: 300 DLHGHGHGDEVLCRLTDLFRDQLGAADHYGRFGGEEFVLLFPGSDAETARILVEALRTRI 359

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVC 257
              QI       + +T S G+A     + I + I+ RAD+ALY +K++GRNR   
Sbjct: 360 MAVQI---GDLPLRLTASFGVAAMGADDHILADILKRADRALYASKENGRNRTTV 411


>gi|145593783|ref|YP_001158080.1| diguanylate cyclase [Salinispora tropica CNB-440]
 gi|145303120|gb|ABP53702.1| diguanylate cyclase/phosphodiesterase [Salinispora tropica CNB-440]
          Length = 726

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 89/227 (39%), Gaps = 10/227 (4%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
            + I  +   A       G    YG+    V   +LV        L  +      + L  
Sbjct: 200 VLPILAMAVSAVYHHLQDGRFGPYGVAAFSVGGFALV----ARQYLTLHDVRRYARRLVE 255

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152
                 +L+  D L+GL N    +  L    E+ +   +   D+D FK +ND  GH  GD
Sbjct: 256 GEAHFRELAHTDALTGLANRRGLLRDLHRCAERGTGCVLFLLDLDGFKNVNDVRGHDAGD 315

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+A +  +L     +     RLGG+EFA    G        +   L   +  +   +  
Sbjct: 316 AVLAEVGRRLRGPLRSGDVAARLGGDEFAVLLPGPPPTT-DQVGERLLAAL-GAAYELPE 373

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           GP + ++ S GIA    +  +  ++  AD AL  AK+ G+NR   + 
Sbjct: 374 GP-VFLSASIGIAGWAGQPDVELLLRHADLALRYAKQRGKNRFERYD 419


>gi|111221728|ref|YP_712522.1| hypothetical protein FRAAL2297 [Frankia alni ACN14a]
 gi|111149260|emb|CAJ60946.1| hypothetical protein; putative membrane protein; putative GGDEF
           domain [Frankia alni ACN14a]
          Length = 451

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 8/165 (4%)

Query: 105 RIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           R D  + L N + +                 LS++  DID+FK++ND FGH +GD ++  
Sbjct: 283 RSDAKTRLANAAYWRQVAEREIGRAARAGRPLSVLLVDIDHFKRVNDRFGHLIGDVILLA 342

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
           ++D L         VGR GGEEF      +  + A  +A  +R  +  ++      P + 
Sbjct: 343 VADTLRATARPRDLVGRFGGEEFVILLTEAGREHALDIAERIRSQVAGTRCRFDGCPPLS 402

Query: 218 ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +T+S G+A +      +S +I RAD ALY AK  GRNRV     +
Sbjct: 403 VTVSVGVATQDGSSGDLSALIARADTALYRAKADGRNRVRLADPL 447


>gi|13506640|gb|AAK08640.1| ScrC [Vibrio parahaemolyticus]
          Length = 774

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 11/184 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           ++    S   ++  ++ D L+ L N S     L            K+ ++F D+D+FKQI
Sbjct: 333 IERRKASEKELAFQAKYDTLTELPNRSYGSERLALELIRASRTGSKVLVMFIDLDHFKQI 392

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRK 201
           ND+ GH VGD+++   + +L  V      + R+GG+EF            A  +A+ +  
Sbjct: 393 NDSMGHFVGDEILKLSAQRLQNVARKTDLLARIGGDEFLLVIPDLPDNDTAKRVASSVLS 452

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
               S+  + +     +T S G++      +    ++  AD A+Y  K+ GR+    ++ 
Sbjct: 453 AF--SEPFVWNNHEFFLTGSVGMSVFPDDGDNAEQLLACADMAMYRVKQDGRDAFCFYNH 510

Query: 261 IENN 264
             N 
Sbjct: 511 NMNQ 514


>gi|288227255|gb|ADC45154.1| Putative sensory box protein/GGDEF family protein [Cupriavidus
           metallidurans CH34]
          Length = 239

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 9/172 (5%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNF 146
                +++  +  D L+GL+N   F   L              ++++ D+D FK +ND  
Sbjct: 68  RAQAAQLAYEASHDPLTGLVNRPEFERRLETAILRARQEGCTHTLMYLDLDRFKAVNDTC 127

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD+++  ++D +         + RLGG+EFA         +   +A  LR+ I   
Sbjct: 128 GHAAGDELLCQIADLMRQQLRRSDTLARLGGDEFAVLLEHCLPSDGERVAESLRQAIAAF 187

Query: 207 QINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           +  I  G    + +S G+     +       +  AD A Y AK++GRNRV  
Sbjct: 188 RF-ICRGHVFSVAVSVGLIRLDERTSNTEDALGAADVACYRAKRAGRNRVEV 238


>gi|71279107|ref|YP_266936.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71144847|gb|AAZ25320.1| GGDEF domain protein [Colwellia psychrerythraea 34H]
          Length = 268

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 13/183 (7%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           L+EL  +   + + + +D L+GL N   +   + +   +       LS+V  D+D FK +
Sbjct: 87  LQELESANQELERKNVLDELTGLHNRRFYDQKIVAEYRRSRRNLTALSLVLIDVDLFKAV 146

Query: 143 NDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND  GH  GD+ + +L+  +      +     R GGEEF      +  + A + A  LR 
Sbjct: 147 NDTHGHLAGDQCLIWLASHIKQSLKRSTDRAFRYGGEEFCLILPNTDAEGALLFAEQLRV 206

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRV--VC 257
            ++           I +TIS GI+    +  I    I   AD ALY AK +GRN+     
Sbjct: 207 QVDAQAFQFRD-VEIPLTISCGISTYQQQVDIGPEQIFSGADNALYQAKHNGRNQTKQHI 265

Query: 258 FSD 260
           F++
Sbjct: 266 FTE 268


>gi|83592321|ref|YP_426073.1| diguanylate cyclase [Rhodospirillum rubrum ATCC 11170]
 gi|83575235|gb|ABC21786.1| Putative diguanylate cyclase (GGDEF domain) [Rhodospirillum rubrum
           ATCC 11170]
          Length = 508

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 55/203 (27%), Positives = 92/203 (45%), Gaps = 19/203 (9%)

Query: 70  SLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122
           ++V+  IT  L LG  +  +L     ++  ++ + +S+L+  D L+GL N       L  
Sbjct: 292 AIVVGGITFVLCLGVGAVVVLLLREFRQRRLTESALSELAVTDGLTGLCNRRHLEEVLRV 351

Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLG 176
                    + L+++  D+D+FK  ND  GH +GD V+  L+  +   +        R G
Sbjct: 352 ECARSARNQQPLALLMIDVDHFKAFNDRHGHRIGDGVLVDLAVIIRALLKRPADVGARYG 411

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIAER--CHKEPI 233
           GEEFA     +       +A  +R  +         G  +   T+S G+  R       +
Sbjct: 412 GEEFAVILPDTDLAGGLRVAEAIRARMAGRP---PVGQDLRAGTVSIGVVSRILTPGYGV 468

Query: 234 STIIYRADQALYVAKKSGRNRVV 256
             ++  AD+ALY AK +GRNRVV
Sbjct: 469 DDLVMDADKALYAAKGAGRNRVV 491


>gi|320155932|ref|YP_004188311.1| sensory box/GGDEF family protein [Vibrio vulnificus MO6-24/O]
 gi|319931244|gb|ADV86108.1| sensory box/GGDEF family protein [Vibrio vulnificus MO6-24/O]
          Length = 807

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 97/211 (45%), Gaps = 18/211 (8%)

Query: 65  LVENLSLVIISITISLLLGYISGS-------ILKELFISYNRISQLSRIDCLSGLLNHSA 117
           L+    L  +S+ +S  +G              K+L  S  +++  ++ D L+ L N S 
Sbjct: 331 LLLAFVLASLSLAVSQYIGRRFNQYQKRIRTDFKKLEQSQEQLAYQAKHDSLTKLPNRSL 390

Query: 118 F-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
                   I    +  ++L+++F D+D FK++ND  GH VGD+++  + ++   +     
Sbjct: 391 LEVQIVSGIQRCRASGKQLAVMFVDLDNFKKVNDQHGHKVGDELLLRVGEKFSQLLRPGD 450

Query: 171 FVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC- 228
            V R GG+EF       SS++EA +LA  +R+ + +    I  G     + S G+A    
Sbjct: 451 SVARFGGDEFVFCFAELSSKEEAEMLAESVRRSLTDH--FILHGALASTSCSVGVAMYPQ 508

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +    +I  AD  L+ +K   + +V+ + 
Sbjct: 509 DGDSADQLIANADIVLFRSKAQHKGQVMFYD 539


>gi|312882345|ref|ZP_07742088.1| hypothetical protein VIBC2010_00090 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369991|gb|EFP97500.1| hypothetical protein VIBC2010_00090 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 827

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 17/191 (8%)

Query: 87  GSILKELFISYNRISQ-------LSRIDCLSGLLNHSAFISSLGSYNEKLS-------IV 132
            ++   L  +Y +I++       L+  D L+GL N       L     + +       I+
Sbjct: 366 NNMANRLSEAYAKINEEKKNFDFLAHHDPLTGLSNRLYASEQLEEAIRQATENDSTFLIL 425

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           + D D FK IND+ GH  GD ++  +S+ L  + G   FV R+GG+EF       S +E 
Sbjct: 426 YLDTDEFKTINDSLGHAAGDNLLITISEVLKEIIGKSGFVARMGGDEFLVLVTDISLKEG 485

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
            +LA  + K +   +        I +++S G+ +   H     T++  AD A+Y AK+ G
Sbjct: 486 EVLAAQINKALR--RPYYIDDNLIFVSVSIGVCQFPEHGRDPETLVRNADTAMYHAKRHG 543

Query: 252 RNRVVCFSDIE 262
           R++   ++D  
Sbjct: 544 RDQYRVYADKM 554


>gi|308172899|ref|YP_003919604.1| diguanylate cyclase or phosphodiesterase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605763|emb|CBI42134.1| putative diguanylate cyclase or phosphodiesterase [Bacillus
           amyloliquefaciens DSM 7]
 gi|328552539|gb|AEB23031.1| diguanylate cyclase or phosphodiesterase [Bacillus
           amyloliquefaciens TA208]
 gi|328910939|gb|AEB62535.1| putative diguanylate cyclase or phosphodiesterase [Bacillus
           amyloliquefaciens LL3]
          Length = 360

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 70/235 (29%), Positives = 115/235 (48%), Gaps = 23/235 (9%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK-- 91
           F  +  + VIF   + L      P   L Y  +           IS + G +S  I+K  
Sbjct: 131 FVMLLFSNVIFTLTMLLLMPEQQPAGALVYYWL-----------ISTVGGMLSLYIIKHE 179

Query: 92  -ELFISYNRISQLSRIDCLSGLLNHSAFIS--------SLGSYNEKLSIVFFDIDYFKQI 142
            +  + + +    +  D L+G+ N   F          +  S + +L++++FDID+FKQI
Sbjct: 180 ADARLLFKQYKFQANYDFLTGIFNKRKFEEVSRVLYDRASQSASSQLALIYFDIDHFKQI 239

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD+V+  L  +L  +        R+GGEEFA      + ++   LA ++R+ 
Sbjct: 240 NDQYGHYEGDQVLKELGARLRFLISGSDPSARIGGEEFAVLIPNCTYKKGLHLAEEIRQA 299

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
           I+ + I ++SG +I +T+S GIA    +     T+   AD+ LY AK SGRN+V 
Sbjct: 300 IDGNPILLTSGDTIPVTVSLGIAHYPTNTADPQTLPLIADRLLYKAKTSGRNQVC 354


>gi|238782711|ref|ZP_04626741.1| Diguanylate cyclase [Yersinia bercovieri ATCC 43970]
 gi|238716371|gb|EEQ08353.1| Diguanylate cyclase [Yersinia bercovieri ATCC 43970]
          Length = 400

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 88/168 (52%), Gaps = 9/168 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQIND 144
           K L    + ++  +  D L+GL N + F   L         ++  +++F D D FK+IND
Sbjct: 212 KHLTQENDFLAHRAAHDSLTGLANRAFFEGRLSRTLNDCKSDQHAAVLFLDGDRFKEIND 271

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKII 203
           ++GH  GD V+  ++D++  +      V RLGG+EFA       E  +  I+AN++ + +
Sbjct: 272 SYGHAAGDVVLTTIADRIRALLRETDLVARLGGDEFAVLLAPIHETDDVLIIANNIIESM 331

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
               I ++ G  I  ++S GIA    H +    ++ RAD+A+Y AKK+
Sbjct: 332 SQ-PIILADGIEITTSLSIGIAIYPDHAQTPEELLQRADEAMYHAKKN 378


>gi|218529163|ref|YP_002419979.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
 gi|218521466|gb|ACK82051.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
          Length = 363

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 65/215 (30%), Positives = 103/215 (47%), Gaps = 5/215 (2%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102
             +A   +  + L P      I +  +++ II    S+LL   +  +  E    Y  +++
Sbjct: 153 ALLAIALVICLPLLPVSEAS-IRLSVIAIFIIDHVTSILLT--TAILALEAERGYAAVAR 209

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           ++R D L+G LN     +  G   E   I+  D+D+FK IND FGH  GD V+   + + 
Sbjct: 210 MARTDALTGALNRQGLAAETGGVTE-AGIIVADLDHFKAINDRFGHAAGDAVLRDFAARA 268

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             +      + RLGGEEF     G        LA  LR+ +  + ++   G ++ IT+S 
Sbjct: 269 TALLPEGCHLARLGGEEFGIVLPGHDHNATTYLAERLRRAVGGAPVSWK-GSAVPITVSL 327

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           G+A     E ++  + RAD+ALY AK  GRNRV  
Sbjct: 328 GVAMLRTGEALNESLERADKALYDAKTDGRNRVRV 362


>gi|193215757|ref|YP_001996956.1| diguanylate cyclase/serine/threonine protein kinase [Chloroherpeton
           thalassium ATCC 35110]
 gi|193089234|gb|ACF14509.1| diguanylate cyclase and serine/threonine protein kinase with TPR
           repeats [Chloroherpeton thalassium ATCC 35110]
          Length = 604

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 8/176 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQ 141
           +L++L      + + +R D L+ L N   F             Y   L++V  DID+FK+
Sbjct: 430 LLEKLREQAEALDRQAREDALTKLANRRHFDQRFAEEFERAERYGHHLTMVISDIDFFKK 489

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND + H +GD+V+  ++        +   V R GGEEF      +  ++ A+    +RK
Sbjct: 490 INDKYSHQIGDEVLKQMAKIFTSSCRSVDLVARYGGEEFVFLFPETPLEKGAMACEKIRK 549

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +E+   + S    + +TIS G+ E    E    ++ +AD+ LY AK +GRN+V  
Sbjct: 550 NVESFDWS-SIAKGLKVTISLGLCENKMVEKREEMVTKADEKLYEAKNNGRNQVRY 604


>gi|153000568|ref|YP_001366249.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|151365186|gb|ABS08186.1| diguanylate cyclase [Shewanella baltica OS185]
          Length = 325

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 113/257 (43%), Gaps = 23/257 (8%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           I+ C+E   +     +  ++  IFF +F      I +     I L     +  + VE++ 
Sbjct: 80  IFSCYEIGYKGLIYISPTVF--IFFFLFNLKSSLILSTLYACISL-----VSALQVESVE 132

Query: 71  LVI---ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---- 123
           LV+   ++    ++   I   I+ +   +   +  L+  D L+G LN     + L     
Sbjct: 133 LVLRFSVATFDCIIFAAIFAHIINKQRQA---LVHLANTDELTGALNRKQLKTKLELSVY 189

Query: 124 ---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                    S++  DID+FK +NDNFGH +GD+++   S  +         + R GGEEF
Sbjct: 190 EYQQQQIPASLLLIDIDFFKMVNDNFGHIMGDQLLNKFSQHIQKKIRKDDLLFRFGGEEF 249

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                 +  + AAI+A DLR+ IE             +T S G+A+    + + T +   
Sbjct: 250 LILLPNTQFESAAIVAEDLRRSIEEQHF---LDQHTQVTCSIGVADLRQADTLDTWLKTC 306

Query: 241 DQALYVAKKSGRNRVVC 257
           D  LY AK +GRN VV 
Sbjct: 307 DNLLYNAKNAGRNCVVA 323


>gi|167031624|ref|YP_001666855.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas putida GB-1]
 gi|166858112|gb|ABY96519.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas putida GB-1]
          Length = 452

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 87/183 (47%), Gaps = 11/183 (6%)

Query: 84  YISGSILKELFISYNRISQL-SR--IDCLSGLLNHSAFIS-------SLGSYNEKLSIVF 133
           + S  ++  +     R   L +R   D L+GL NH+  +              + LS   
Sbjct: 267 FRSRHLITTVRNRAARARHLKARMVRDSLTGLYNHTHILQLLEDCSFRARREQQPLSFAM 326

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK+IND  GHP+GD+VI  L+  L        F+GR GGEEFA     ++   A 
Sbjct: 327 LDIDHFKKINDRHGHPMGDRVIKSLALFLKQRLRKTDFIGRYGGEEFAIVMPNTALDAAH 386

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            + +++R+      +  +    +  T SAG+ +        T+   AD+ALY AK +GRN
Sbjct: 387 RVLDEIRRRFAEI-LYPAQPRDLQCTFSAGVVQLDEGLDALTMASAADEALYRAKHAGRN 445

Query: 254 RVV 256
            VV
Sbjct: 446 CVV 448


>gi|126175209|ref|YP_001051358.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|125998414|gb|ABN62489.1| diguanylate cyclase [Shewanella baltica OS155]
          Length = 579

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 109/244 (44%), Gaps = 26/244 (10%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGL-----EYILVENLSLVIIS---------ITISLL 81
           + FI  +     ++ F+I LT ++ +     + ++    ++  I+         +T +L 
Sbjct: 325 TAFIILIFCSGILYCFFIWLTSWHFITKGIIKPVMATRDAMNAIANEKLDTHMPVTDNLE 384

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFF 134
           L  +  S+   L     ++  ++  D L+G  N                 +N  L I+ F
Sbjct: 385 LQQMVNSLET-LKSYAAQVKGMAETDGLTGCYNRRYLDIQLQKELEYARDHNMPLGIILF 443

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           DID FKQ ND +GH  GD+ +  + +    +       + R GGEEF      S  +E  
Sbjct: 444 DIDNFKQFNDRYGHVAGDQCLKNIVNAAKSILKRPTDMLARYGGEEFMIVLPSSHLEEVY 503

Query: 194 ILANDLRKIIENSQINISSGPSIHI-TISAGIA--ERCHKEPISTIIYRADQALYVAKKS 250
             A  LR+ I + +I     P   I TISAGI   +   +   +++I RAD+ALY AK +
Sbjct: 504 QFAELLREKIISLEIPHEDSPHAGILTISAGITCWQLPQQLDANSLINRADEALYHAKLT 563

Query: 251 GRNR 254
           GRNR
Sbjct: 564 GRNR 567


>gi|70728684|ref|YP_258433.1| TPR domain-containing protein [Pseudomonas fluorescens Pf-5]
 gi|68342983|gb|AAY90589.1| signaling repeat/GGDEF domain/EAL domain protein [Pseudomonas
           fluorescens Pf-5]
          Length = 759

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 87/182 (47%), Gaps = 11/182 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
            ++L +L  +   + Q++  D L+ L+N   F             +   L+++F DID+F
Sbjct: 273 NALLSQLDQARVSLQQVAHYDALTNLINRRGFNQLFAEKLIEKTTFGGMLAVMFLDIDHF 332

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILAND 198
           K+IND+ GH  GD+++  ++  +     +    V RLGG+EF         +EA  +A  
Sbjct: 333 KRINDSLGHDAGDELLKVIAGHIKSSTRSHEDVVARLGGDEFCILINLYDREEARQMAQR 392

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           + + ++   I +  G  + +T S GI+           ++  AD ALY +K  GRN +  
Sbjct: 393 IMQKMKE-PIEL-GGRRMVMTTSIGISVFPDDGKTCEELLKNADLALYQSKDCGRNSLHF 450

Query: 258 FS 259
           F+
Sbjct: 451 FN 452


>gi|22298467|ref|NP_681714.1| hypothetical protein tlr0924 [Thermosynechococcus elongatus BP-1]
 gi|22294647|dbj|BAC08476.1| tlr0924 [Thermosynechococcus elongatus BP-1]
          Length = 773

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 11/189 (5%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIV 132
           L +      + + L  +   + ++  ID L+ + N   F               + LS++
Sbjct: 581 LTVALQQAEMYEALEQANTNLQEMVYIDSLTDIGNRRCFDELFLKEWRRCQREQKPLSLI 640

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQE 191
             DID FK  ND++GH  GD+++  ++  L            R GGEEFA     + ++ 
Sbjct: 641 MLDIDCFKAYNDHYGHLQGDEILKQVARILESHLQRAGDLATRFGGEEFALILPDTDQRG 700

Query: 192 AAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAK 248
           A  +   ++  +  + I  + S     +T S GIA            +++ ADQ LY AK
Sbjct: 701 AIHIVEKIQGALAEANITHAKSTVGPKLTASFGIATTIPTLDHTPEMLLHLADQCLYEAK 760

Query: 249 KSGRNRVVC 257
             GR+R V 
Sbjct: 761 THGRDRWVA 769


>gi|85703548|ref|ZP_01034652.1| diguanylate cyclase, putative/response regulator [Roseovarius sp.
           217]
 gi|85672476|gb|EAQ27333.1| diguanylate cyclase, putative/response regulator [Roseovarius sp.
           217]
          Length = 479

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 13/167 (7%)

Query: 104 SRIDCLSGLLNHSA---FISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           + ID L+G  N      F+  +     S  +  +++  D+D+FKQ+ND +GH  GD+V+ 
Sbjct: 307 AMIDPLTGAHNRRFALPFLQRVIETSRSTGKSFAVMVADLDFFKQVNDRYGHAAGDRVLC 366

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-S 215
            ++  L         + R+GGEEF      ++   A   A+ L  +I  + I +S    +
Sbjct: 367 EVTRHLRAHLREGDMLARIGGEEFLIVTPATTRLRAQRTADRLCAMIAQTPITLSGHKAT 426

Query: 216 IHITISAGIAERCH-----KEPISTIIYRADQALYVAKKSGRNRVVC 257
           +H+T+S G+            P+  ++  AD+ALY AK  GRN V  
Sbjct: 427 LHVTVSIGVTMANPSPSRAAPPVGQLLEEADRALYAAKAQGRNTVTF 473


>gi|325914769|ref|ZP_08177107.1| response regulator receiver modulated diguanylate cyclase
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325539046|gb|EGD10704.1| response regulator receiver modulated diguanylate cyclase
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 413

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 9/168 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+GL N   F+         L S ++ ++    DID+FK IND +GH  GD
Sbjct: 247 LQDLATRDFLTGLPNRRYFLEQSQRVIPQLLSQDQTVTAAMLDIDHFKHINDTWGHEAGD 306

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  ++  +         V R GGEEF     G     A      LR+ I   ++ +  
Sbjct: 307 QALRAVAASVSGHARPQDLVARFGGEEFCLLVPGLDAANATSYFETLRERISALRVRVGD 366

Query: 213 GPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++ +T+S G+       + +  ++  AD+ LY+AK  GRN+V   S
Sbjct: 367 D-TLSMTVSIGVCIATESDQSLHHLLNEADKHLYLAKAGGRNQVRLAS 413


>gi|149186853|ref|ZP_01865163.1| hypothetical protein ED21_25482 [Erythrobacter sp. SD-21]
 gi|148829520|gb|EDL47961.1| hypothetical protein ED21_25482 [Erythrobacter sp. SD-21]
          Length = 561

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 112/248 (45%), Gaps = 24/248 (9%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGL----EYILVENLSLVIISITISLLLGY--ISGSILK 91
           F A V+F+A   +   G+            +++ N  L+ I++ +     Y  ++G I +
Sbjct: 29  FAAIVLFVATAGMVLPGIVASISHGGSPPDVVLTNALLLNIALIMLGWHRYKGLTGEI-E 87

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
               S     +L+  D L+G LN  +  + L +        N  L+ +  D+D FKQ+ND
Sbjct: 88  AHRRSEREARRLADYDDLTGCLNRRSLAAELEAMLAKGAGKNRALAAIAIDLDNFKQVND 147

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG--SSEQEAAILANDLRKI 202
             GH VGD V+   +++   +      + RLGG+EF           +   +LA  L + 
Sbjct: 148 LNGHAVGDAVLRTTAERFRHILPEGASLARLGGDEFVCVLRYDLDRPERVDMLATRLVEQ 207

Query: 203 IENSQINISSGPSIHITISAGIAERCH------KEPISTIIYRADQALYVAKKSGRNRVV 256
           +    ++  +  ++ ITIS GIA   H      + P   ++++AD A+Y AKK G+NR  
Sbjct: 208 VARPVVH--NDIAVDITISIGIASSVHVGADTNQSPAQDLMHKADIAMYHAKKKGKNRFY 265

Query: 257 CFSDIENN 264
            F     N
Sbjct: 266 WFEPPMEN 273


>gi|88703911|ref|ZP_01101626.1| sensory box GGDEF family protein [Congregibacter litoralis KT71]
 gi|88701738|gb|EAQ98842.1| sensory box GGDEF family protein [Congregibacter litoralis KT71]
          Length = 567

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 11/180 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           + + +  SY  + +++  D L+GL N   F   L          N  ++++  D+D FK 
Sbjct: 127 VEQRMHESYLAVKRMAERDPLTGLSNRYHFEEILKVMIATNRRLNNSVALLALDLDDFKN 186

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           +ND  GH VGD+V+    +++           R+GG+EFA    G ++ QE + +AN + 
Sbjct: 187 VNDTLGHGVGDQVLIEAVNRISTCLRENEGFARMGGDEFAIIIGGVANLQEVSAIANRIL 246

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFS 259
                +      G  I   +S G A         + ++  AD A+Y +K+SG+N++  + 
Sbjct: 247 GKF--TTPFTCDGVEISCGVSIGAALCPADTTAPNQLMKCADIAMYRSKQSGKNKICFYE 304


>gi|322834543|ref|YP_004214570.1| diguanylate cyclase [Rahnella sp. Y9602]
 gi|321169744|gb|ADW75443.1| diguanylate cyclase [Rahnella sp. Y9602]
          Length = 426

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 57/200 (28%), Positives = 98/200 (49%), Gaps = 18/200 (9%)

Query: 67  ENLSLVIISITISLL--LGYISGSILKELFISYNR-------ISQLSRIDCLSGLLNHSA 117
            + SL + S  I+ L  L     S+L EL    N        ++Q +  D L+GL N + 
Sbjct: 208 RSFSLRVPSAPIAELHTLSQDFNSLLTELEAWENHMRNENVSLTQKALHDGLTGLHNRAF 267

Query: 118 FISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171
           FI +L            L+++F D+D FK+IND+ GH  GD+V+  + ++L         
Sbjct: 268 FIDTLNQCFNPMRPALSLALLFIDVDNFKEINDSLGHAAGDRVLMVIGERLAKTLRKGDV 327

Query: 172 VGRLGGEEFAAAA-LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCH 229
           + RLGG+EFA       S  EA   A  + +I+  + + + +  ++ +++S GIA     
Sbjct: 328 LARLGGDEFAILLEPMVSTAEAVAFAERIVEIM-KTPVILLNNKTLDVSLSIGIALSPSQ 386

Query: 230 KEPISTIIYRADQALYVAKK 249
                 ++ +AD+A+Y +KK
Sbjct: 387 ATNAKELLDKADEAMYRSKK 406


>gi|229105893|ref|ZP_04236518.1| Sensory box/GGDEF [Bacillus cereus Rock3-28]
 gi|228677524|gb|EEL31776.1| Sensory box/GGDEF [Bacillus cereus Rock3-28]
          Length = 909

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 95/214 (44%), Gaps = 11/214 (5%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           +  ++    I   +++ V I +   +   Y+    + E      +I+ L+  D L+ L N
Sbjct: 430 IRAYHKNRDIYYLHVTAVPIFLKDHISGVYLMIKDITESKQQQEQINFLAYHDTLTELAN 489

Query: 115 HSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
             AF   L              +++F D+D FK IND  GH VGD ++  ++ +L  +  
Sbjct: 490 RRAFHQYLEKAIARAKISKSSFAVMFLDLDRFKVINDTLGHRVGDLLLIAVAKRLERLST 549

Query: 168 TPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
             M + RL G+EF        ++ +   +A+ +  ++  ++        + I+ S GIA 
Sbjct: 550 QHMKLARLAGDEFTILIENYKKRTDVKKIADMI--VVAMNKPFEIENQHLRISPSIGIAI 607

Query: 227 RCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                E   +I+  AD A+Y AK  G+NR   ++
Sbjct: 608 YPEAGEDPLSILQHADMAMYEAKNKGKNRSSLYT 641


>gi|225872401|ref|YP_002753856.1| diguanylate cyclase (GGDEF) domain protein [Acidobacterium
           capsulatum ATCC 51196]
 gi|225791597|gb|ACO31687.1| diguanylate cyclase (GGDEF) domain protein [Acidobacterium
           capsulatum ATCC 51196]
          Length = 476

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 11/183 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137
           I+   + +       +S L+  D L+GL N +     L         + E++++   DID
Sbjct: 284 ITSRDVTQHKQLIEHVSHLAHYDHLTGLANRALMRDRLQQAMHMASRHEEQVAVFMLDID 343

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA 196
            FK+IND+ GH  GD ++  ++++L         V R GG+EF     G  +  +A    
Sbjct: 344 GFKEINDSLGHADGDALLVIVAERLRGAVRESDTVARFGGDEFVLIMPGFKNGADALHCG 403

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             + + +  S+     G ++ ITIS G+         +  ++  AD A+Y  K++GRN  
Sbjct: 404 QQIVRNL--SRPVYIRGNAVEITISLGMCIYPDDATDVDLLLQNADAAMYSVKRTGRNGF 461

Query: 256 VCF 258
             F
Sbjct: 462 RTF 464


>gi|254505126|ref|ZP_05117277.1| hypothetical protein SADFL11_5166 [Labrenzia alexandrii DFL-11]
 gi|222441197|gb|EEE47876.1| hypothetical protein SADFL11_5166 [Labrenzia alexandrii DFL-11]
          Length = 900

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 13/205 (6%)

Query: 66  VENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
            + +S+  I      L  YIS  S + +L      + +++  D L+ L N       L  
Sbjct: 290 AQRVSVAAIKDENGTLTNYISIFSDITDLKNHQYELERIAHYDPLTELPNRVLLRERLSE 349

Query: 125 YNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
             E++       ++ FFD+D FK+IND +GH +GD+++  +S +L+  F +   V RLGG
Sbjct: 350 AIERVKRDNCWGAVFFFDLDGFKEINDRYGHELGDELLTTVSRRLLSQFRSTDTVARLGG 409

Query: 178 EEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--IS 234
           +EF A        +A   LA  +  + E S+       S+ I+ S G+A           
Sbjct: 410 DEFIAVVSDYESPDAYRTLAERV--LAETSKPIDLGDKSVAISTSVGVAAFSADSDTTPD 467

Query: 235 TIIYRADQALYVAKKSGRNRVVCFS 259
            ++ ++D A+Y +K  G+NR   F+
Sbjct: 468 QLLRQSDSAMYQSKLEGKNRYTLFN 492


>gi|218288857|ref|ZP_03493108.1| diguanylate cyclase [Alicyclobacillus acidocaldarius LAA1]
 gi|218240946|gb|EED08123.1| diguanylate cyclase [Alicyclobacillus acidocaldarius LAA1]
          Length = 720

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 55/181 (30%), Positives = 84/181 (46%), Gaps = 10/181 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           S+L E    Y  +   S  D  +GLLN+  F   L          N  +S++  D+D+FK
Sbjct: 372 SVLLENAKLYQELQDRSFRDEATGLLNYRYFYEELSRRVQASLRENRPVSVLIVDVDFFK 431

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           + ND +GH  GD V+  +   L           R GGEEFA     +S  EA  +A  +R
Sbjct: 432 RFNDTYGHLAGDVVLREVGRILERHAAPDGVAARYGGEEFAVLLW-ASAHEAYEVAEAIR 490

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYV-AKKSGRNRVVCF 258
           + +    ++        IT+S G+A    H E    ++ +AD A+Y  AK+ GRNR   +
Sbjct: 491 QDVSKLAVDFEGYHLQGITVSIGMATCPDHSESDRDLLVKADSAMYWGAKQRGRNRTAMY 550

Query: 259 S 259
           +
Sbjct: 551 A 551



 Score = 79.7 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 5/137 (3%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+ L  H      +       +    ++  D+  F +IN  +G   GD+V+      +
Sbjct: 561 DPLTSLYTHHFVNIRVRDEMAHGTTCWGVICLDLVRFSEINAAYGFETGDEVLRQAGVVI 620

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             V        R GG+E        S+ E   +   + + IE    ++    ++ + +++
Sbjct: 621 RQVLRHSELACRYGGDEMLIIIPNVSKLELVGVCRRVTQAIEQHPFHVGEN-TLSVRVAS 679

Query: 223 GIAERCHKEPISTIIYR 239
           G+      +  + +  R
Sbjct: 680 GMEVYDVVQDGADLFNR 696


>gi|149376883|ref|ZP_01894638.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter algicola DG893]
 gi|149358775|gb|EDM47244.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter algicola DG893]
          Length = 753

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 81/184 (44%), Gaps = 11/184 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + +       +++L   D L+GL N   F+  L            + ++V  D+D F+ +
Sbjct: 304 ISQRQAVQKDLARLETTDALTGLANRRFFMEDLAHTLSIADRQMRQAALVMIDLDRFQML 363

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRK 201
           ND+ GH  GD+++  ++++L  +    + V   GG+EF        +  +   L   +++
Sbjct: 364 NDSLGHQFGDELLIKVAERLNALSDEKVMVAYSGGDEFMVCQQHVENIDDVINLLGQIKQ 423

Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
             E  +     G    IT + G+A          T++  AD ALY AK+ GRN    +++
Sbjct: 424 CFE--EPFAVQGEEHSITATMGVAVYPQSGLDADTLLRNADVALYRAKEQGRNTYQFYTE 481

Query: 261 IENN 264
              +
Sbjct: 482 GMQD 485


>gi|85373611|ref|YP_457673.1| hypothetical protein ELI_03920 [Erythrobacter litoralis HTCC2594]
 gi|84786694|gb|ABC62876.1| hypothetical protein ELI_03920 [Erythrobacter litoralis HTCC2594]
          Length = 552

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 92/218 (42%), Gaps = 25/218 (11%)

Query: 70  SLVIISITISLLLGYISGSILKEL-------FISYNRISQLSRIDCLSGLLNHSAF---- 118
           S++  ++ +++ L        +EL         +  +  +L+ ID L+G  N  +     
Sbjct: 57  SVLSSALILNIALIIFGWRRYRELTVEIDTRRAAEAKARELAEIDPLTGCNNRRSATIET 116

Query: 119 ---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
              I         ++ +  D+D FKQ+ND  GH  GD V+   +D++  +      + RL
Sbjct: 117 DRAIDKAHKEGRAIAFIMVDLDNFKQVNDLNGHQAGDDVLVRAADRMSSLLPRDGLLARL 176

Query: 176 GGEEFAAAAL--GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE------- 226
           GG+EFA       +S        + L   +   +        + +T+S GIA        
Sbjct: 177 GGDEFAIVHPYDKTSPDLVEQFVSRLIDSLA--KPMAVQSQKVDVTVSVGIASGMSGRHG 234

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
             ++     ++++AD A+Y AK+ G+NR   F +   N
Sbjct: 235 EQNETDAQVLMHQADIAMYHAKRQGKNRYYWFEETMEN 272


>gi|332524404|ref|ZP_08400618.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rubrivivax benzoatilyticus JA2]
 gi|332107727|gb|EGJ08951.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rubrivivax benzoatilyticus JA2]
          Length = 960

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 12/186 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
           S + E      R+ + +  D L+ L N +   + L    E        +++ + D+D FK
Sbjct: 492 SDITEQRQQRERLERQALYDELTRLPNRAHLSTLLAEAMEVADRDGFLVAVCYLDLDRFK 551

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTP----MFVGRLGGEEFAAAALGSSEQEAAILA 196
            +ND FGH  GD+++  L+ +L               RL G+EF       S  E     
Sbjct: 552 PVNDRFGHAAGDRLLVELASRLRNTLRRRDQWADVAARLHGDEFVLLLRAGSIDEVRRAI 611

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             + +++    +  SS   + IT S G       +     ++  AD A+Y AK+SGRN  
Sbjct: 612 VRVLRVLSQPYLVDSSAAPVPITTSLGATLYPLDRSDPEALLRHADHAMYEAKQSGRNGY 671

Query: 256 VCFSDI 261
           V F   
Sbjct: 672 VLFDPA 677


>gi|330965054|gb|EGH65314.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 897

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + +  ++  RI +L+  D L+ L N  AFI +L        +  +S++  DID FK+IN
Sbjct: 454 DITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDERFGRDTDTPMSLLLVDIDNFKRIN 513

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++  L+ +L         + R    EFA     + ++     A+ +   +
Sbjct: 514 DSLGHQTGDKLLISLARRLRNTLSPTDVLARFASNEFAVLLDNTGQEAGQATASQVLATL 573

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I +T S G+A    H     T++  A  AL+ AK +G+++V  F++  
Sbjct: 574 DKPMF--VDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFTEAL 631

Query: 263 NNTC 266
           N   
Sbjct: 632 NAEA 635


>gi|254447732|ref|ZP_05061197.1| sensory box/ggdef family protein [gamma proteobacterium HTCC5015]
 gi|198262512|gb|EDY86792.1| sensory box/ggdef family protein [gamma proteobacterium HTCC5015]
          Length = 612

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 12/190 (6%)

Query: 81  LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132
           LLG + +   + EL +S       +  D L+GL N +     L            K+ I+
Sbjct: 185 LLGRVWTLRDITELKLSEREARYNAGHDRLTGLPNRTRLYDRLEQSLSAAKRSASKVGIL 244

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE- 191
           F D+D FK +ND++GH +GD ++  ++ +L         V R GG+EF        +   
Sbjct: 245 FMDLDGFKPVNDHYGHDIGDLLLVEVAGRLSACLREMDTVARFGGDEFVILLHEIDDAHS 304

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250
           AA +A  +     N+  ++    +++I  S GIA      +   +++ RAD A+Y AK  
Sbjct: 305 AAEVAQRVINCF-NTPFDVRQ-LTLNINTSIGIALYPDNADTPESLLKRADMAMYHAKSR 362

Query: 251 GRNRVVCFSD 260
            +     +S+
Sbjct: 363 SQGFFEFYSE 372


>gi|116253212|ref|YP_769050.1| GGDEF/EAL transmembrane sensory box protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115257860|emb|CAK08958.1| putative GGDEF/EAL transmembrane sensory box protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 694

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 100/216 (46%), Gaps = 16/216 (7%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           G+   LV  + ++I+++  S  +  +  +       +  R   LS  D L+ L N +AF 
Sbjct: 214 GIMTGLVSAVMIIILALGASTYIIDMQST-----QAAVERYRHLSLHDPLTNLANRAAFN 268

Query: 120 SSLGSY-NEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
             L +  N+       ++++ FD+D FK+IND  GH  GD V+  ++++L  +     FV
Sbjct: 269 EHLSALVNKPKDMTANIAVLSFDLDRFKEINDVHGHAAGDAVLRAVAERLSGIMQNGQFV 328

Query: 173 GRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230
            R+GG+EF A         +A  LA  +   I   +    +G ++ +  S GI+      
Sbjct: 329 ARVGGDEFVAVMCDYFVRSDAKGLAQRMLDEIA--RPIEWNGHALTVGSSIGISTYPGQA 386

Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           + +  ++ +AD A+Y AK +  N +  +    +   
Sbjct: 387 DTLDDLLSQADIAMYRAKSTATNSICFYEPSMDQAA 422


>gi|325915298|ref|ZP_08177618.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325538491|gb|EGD10167.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 964

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 100/231 (43%), Gaps = 16/231 (6%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL---LGYISGSILKE 92
            I +  +   + I+ FY+  T  Y         L+ VI   T  L    L     S  +E
Sbjct: 738 VIALGILALASLIYGFYLWRTASYRRSQ---RQLNTVIDKRTRELSDKNLALQQAS--QE 792

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
                 ++   +  D L+ L N       L  +          L++   DID+FK IND 
Sbjct: 793 REALMRQLEYRASHDVLTALPNRREAERVLQQWFDAARSGGPALALALMDIDHFKHINDE 852

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           +GH VGD V++ L + L        F  R GGEEF  AA G   ++A  L   +R+ +  
Sbjct: 853 YGHDVGDAVLSALGEALSDQDQAQCFAARHGGEEFLLAATGLDAEQARALFERMRQRLAT 912

Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             ++ + G ++  T S G+A          ++  AD+ LY AK+ GR+R+V
Sbjct: 913 IDVD-AHGITVRCTASMGMAMSDEAPTRRELLALADRRLYQAKRQGRDRLV 962


>gi|315502496|ref|YP_004081383.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Micromonospora sp. L5]
 gi|315409115|gb|ADU07232.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Micromonospora sp. L5]
          Length = 716

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 12/187 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQI 142
            + + +    R+   +  D L+GL N + F  +LG        ++++ + F D+D FK +
Sbjct: 269 DITQRYELQQRLRFQALHDPLTGLPNRTLFFETLGDVFDGAGPDQRVGLCFIDLDGFKAV 328

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAAL-GSSEQEAAILANDLR 200
           ND+ GH +GD+++  ++ +L     G    V R+GG+EF           +A  +A    
Sbjct: 329 NDSLGHDLGDRLLKVIARRLSDCVAGRGHLVARMGGDEFVILVDSDGGIDDAVEVAELAL 388

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
             +  S         + ++ S GI E    E  +  ++  AD  LY AK  GR R   + 
Sbjct: 389 AAV--SAPVHVGDQQLAVSASIGIVECPAAETSVGDLMKAADTTLYWAKAEGRGRWAVY- 445

Query: 260 DIENNTC 266
           D E +  
Sbjct: 446 DPERSAA 452


>gi|255525464|ref|ZP_05392401.1| response regulator receiver modulated diguanylate cyclase
           [Clostridium carboxidivorans P7]
 gi|255510829|gb|EET87132.1| response regulator receiver modulated diguanylate cyclase
           [Clostridium carboxidivorans P7]
          Length = 307

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 60/170 (35%), Positives = 86/170 (50%), Gaps = 10/170 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHP 149
             ++  ++  D L+GL NH+  I  L     K       +S    DID+FK+IND +GH 
Sbjct: 138 QEKLKAMAIKDGLTGLYNHTFLIEILEKEIRKHEKKSSSISFAMIDIDHFKKINDVYGHL 197

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GDKV+  LSD L          GR GGEEF      S ++    L   LRK +++++  
Sbjct: 198 FGDKVLKGLSDILSESVANFGIAGRYGGEEFGIIFTNSDKEGLCNLCEKLRKNVQDNEFQ 257

Query: 210 ISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVC 257
           I +   + ITIS G   +   + +    II +AD+ALY AK SGRN+V  
Sbjct: 258 IGNDK-VKITISIGACFKEDVKDLKSDEIIRQADEALYKAKSSGRNKVEI 306


>gi|254456807|ref|ZP_05070235.1| signal transduction response regulator-chey like receiver and ggdef
           domain [Campylobacterales bacterium GD 1]
 gi|207085599|gb|EDZ62883.1| signal transduction response regulator-chey like receiver and ggdef
           domain [Campylobacterales bacterium GD 1]
          Length = 640

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 11/180 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDID 137
           I+ S + +      ++ +    D L+   N   F  ++ S        N+   I+FFDID
Sbjct: 462 INFSDISDAMTEKLQLQKQIVRDQLTKAYNRVYFEKTIDSLIASNTSQNKNTGIIFFDID 521

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK +ND +GH  GD V+  + D +     +   + R GGEEF      +S  E    A 
Sbjct: 522 HFKNVNDTYGHKAGDDVLRIIVDLVKKNIRSNDKLIRWGGEEFLILLPANSIDEVYKEAE 581

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            LRK IE  + +I      H+T S G++       I   + +AD+ LY AKK+GRNRVV 
Sbjct: 582 HLRKTIEKHEFDIVK----HLTCSFGLSLHEATADIHESVKKADEKLYEAKKNGRNRVVF 637


>gi|86144307|ref|ZP_01062639.1| Predicted signal transduction protein [Vibrio sp. MED222]
 gi|85837206|gb|EAQ55318.1| Predicted signal transduction protein [Vibrio sp. MED222]
          Length = 767

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 59/247 (23%), Positives = 112/247 (45%), Gaps = 11/247 (4%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL-SLVIISITISLLLG 83
           ++F I  S F S+  A   +I +  L+ +G T    ++ I  +   +L  + + +     
Sbjct: 258 YSFCIDDSAFPSLVSAK--YIPDYKLWVVGRTDLEHVDGIFAKEFGTLFFVFVVLQFGFY 315

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS----YNEKLSIVFFDIDYF 139
           ++  SI K    + +++   +  D L+ L N S    ++G      +E  S++F DID F
Sbjct: 316 FLVKSIAKNEQRTRSQLIYQANHDPLTSLPNRSYMRKNIGKWIEDESEPFSLLFIDIDNF 375

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K +ND  GH  GDKV+  ++ +L+        + R   +EF      +SE E   L+  +
Sbjct: 376 KCVNDTHGHDFGDKVLKQIALRLMRFRSRVSLLVRESSDEFLFLTTLNSESEIKRLSERI 435

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +++  SQ          ++ S GIA    H   + +++  AD ++Y AK+  +N    F
Sbjct: 436 IEVL--SQPYEVESAQFLLSCSVGIARFPDHGRDLDSLLRSADISMYKAKQQ-QNSYSIF 492

Query: 259 SDIENNT 265
           +    + 
Sbjct: 493 TTEMQDA 499


>gi|307292877|ref|ZP_07572723.1| diguanylate cyclase [Sphingobium chlorophenolicum L-1]
 gi|306880943|gb|EFN12159.1| diguanylate cyclase [Sphingobium chlorophenolicum L-1]
          Length = 602

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 92/220 (41%), Gaps = 16/220 (7%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106
           +I L Y+        + I      L +++  ISL L  +            + + Q++  
Sbjct: 383 SIGLLYVEQPDDTTADQIGRTERYLEMLAENISLALANL---------RLRDALRQMAMA 433

Query: 107 DCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+GL N   F +          +    L+ +  DID+FK+ ND  GH  GD V+  + 
Sbjct: 434 DPLTGLANRRRFDTAFREQVLHAEATMAPLACLIADIDHFKRFNDTHGHDAGDAVLRAVG 493

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L           RLGGEEF     G ++ +A   A  +++ ++  ++         +T
Sbjct: 494 GVLNEALREKDCAFRLGGEEFLLLMPGFAQDQAIDRAIQVQQKLQELRVEHRGEELGPVT 553

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            S G+A         T++  AD AL  AK  GRN++V  +
Sbjct: 554 ASFGLAVFPDHGRAETLVRTADAALLRAKNQGRNQIVIAT 593


>gi|300717220|ref|YP_003742023.1| diguanylate cyclase [Erwinia billingiae Eb661]
 gi|299063056|emb|CAX60176.1| diguanylate cyclase [Erwinia billingiae Eb661]
          Length = 464

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 73/252 (28%), Positives = 124/252 (49%), Gaps = 26/252 (10%)

Query: 24  PHTFMIYFSIFFSIF----------IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI 73
           P   +++ ++ + IF          I  +I +A+  L   G   F+ ++ +   +  L +
Sbjct: 213 PLPALMWCAVSYPIFFTCLLTLLTGITEIILVASKVLTIQGSDDFFRIDSL--ASARLGV 270

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----- 128
            ++TIS L+  +S +  K+L     RI++ +  D L+G L  S   S L +   +     
Sbjct: 271 AAMTISPLIVALSTTANKKLVA---RITKRADYDFLTGALTRSGLSSQLNALIARKNKTS 327

Query: 129 ---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
               ++   DID FK IND +GH  GD+V+A   + +         + R+GGEEF     
Sbjct: 328 GFYGAVFVVDIDRFKNINDTYGHAAGDQVLAKTVECIRQSLQQTAIISRMGGEEFLVLIE 387

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQA 243
           G S+  A +LA+ LR+ IE + I ++   ++ +T+S GI+         +   I  AD+ 
Sbjct: 388 GISQPRAYLLADRLRQSIERNTIMLNE-QNLSVTVSIGISTLHVIDAGSLDESIKNADEQ 446

Query: 244 LYVAKKSGRNRV 255
           LY+AK SGRNRV
Sbjct: 447 LYIAKSSGRNRV 458


>gi|47093829|ref|ZP_00231574.1| GGDEF domain protein [Listeria monocytogenes str. 4b H7858]
 gi|226224516|ref|YP_002758623.1| GGDEF domain protein [Listeria monocytogenes Clip81459]
 gi|254825593|ref|ZP_05230594.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J1-194]
 gi|254852815|ref|ZP_05242163.1| GGDEF domain-containing protein [Listeria monocytogenes FSL R2-503]
 gi|254931917|ref|ZP_05265276.1| GGDEF domain-containing protein [Listeria monocytogenes HPB2262]
 gi|254993375|ref|ZP_05275565.1| GGDEF domain protein [Listeria monocytogenes FSL J2-064]
 gi|300763778|ref|ZP_07073775.1| hypothetical protein LMHG_10682 [Listeria monocytogenes FSL N1-017]
 gi|47017796|gb|EAL08584.1| GGDEF domain protein [Listeria monocytogenes str. 4b H7858]
 gi|225876978|emb|CAS05687.1| GGDEF domain protein [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|258606143|gb|EEW18751.1| GGDEF domain-containing protein [Listeria monocytogenes FSL R2-503]
 gi|293583469|gb|EFF95501.1| GGDEF domain-containing protein [Listeria monocytogenes HPB2262]
 gi|293594836|gb|EFG02597.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J1-194]
 gi|300515514|gb|EFK42564.1| hypothetical protein LMHG_10682 [Listeria monocytogenes FSL N1-017]
 gi|332312352|gb|EGJ25447.1| GGDEF domain protein [Listeria monocytogenes str. Scott A]
          Length = 375

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 106/232 (45%), Gaps = 11/232 (4%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           FS F+A +I      L+Y       G      E +   ++    +LL+ Y    I K   
Sbjct: 140 FSRFVALIILNFPAILYYFVNNFDEGRILQGFEIIEYFLLFFVTALLVFYACNYIDKSNL 199

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
           +  N +++ +  D L+ L N   F               + LS+   DID+FK+IND  G
Sbjct: 200 VIQN-LTETAMTDSLTNLPNMRFFTQQFGWIFAKSQKRKKSLSLFIIDIDHFKEINDFHG 258

Query: 148 HPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  G+ V+A  S  L    F       R+GGEEFA        ++AA++A+  R+ +E +
Sbjct: 259 HQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTEQAALIADFFREEVERA 318

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           +    +  S  +T+S G+A          ++   ADQALY AK++GRN++  
Sbjct: 319 KFPY-NPASGKVTVSIGVASASSNFSTTESLFEAADQALYQAKQNGRNQIAV 369


>gi|323495611|ref|ZP_08100684.1| diguanylate cyclase [Vibrio sinaloensis DSM 21326]
 gi|323319343|gb|EGA72281.1| diguanylate cyclase [Vibrio sinaloensis DSM 21326]
          Length = 259

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 65/264 (24%), Positives = 114/264 (43%), Gaps = 22/264 (8%)

Query: 6   KDFLSIWLCHEKNL-ESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI 64
             F S W+     L   +  H      +I  + F++ VI  +++  F I       ++Y 
Sbjct: 4   VAFESDWVTRFGRLCVKYGVHRLSAICAILCT-FVSVVITWSSMVYFDIP-----RIDYG 57

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI----- 119
           L+ +    II I IS    ++  +++  L ++   ++ ++  D L+ L N   F      
Sbjct: 58  LIVS---TIIPILISYPSFFLVWNLILRLHLAEREMANIANHDPLTQLPNRRCFDQFVGV 114

Query: 120 --SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLG 176
                    +  ++   DID+FKQ ND +GH  GD  +  ++ +L   + G P  V R G
Sbjct: 115 LLERCRDSEQGGAVFIVDIDHFKQYNDYYGHQQGDVCLQAIARKLEKEIEGLPGMVARFG 174

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG---PSIHITISAGIAERCHKEP- 232
           GEEF       S  +   + N L + + + QI   +      + +++  G +   H+   
Sbjct: 175 GEEFVVVLESISASDMQSIGNRLCRTVADEQIPHQASVLTEWVTVSVGGGYSHDIHETQC 234

Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256
           I  +I  AD+ LY AK  GRN  V
Sbjct: 235 IDGLISIADKNLYQAKSQGRNTFV 258


>gi|309789040|ref|ZP_07683635.1| gmr domain protein [Shigella dysenteriae 1617]
 gi|308923311|gb|EFP68823.1| gmr domain protein [Shigella dysenteriae 1617]
          Length = 268

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 89/186 (47%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           S + + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 56  SCTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINHADNNKVGVVYLDLDNFK 115

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 116 KVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASQI- 174

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    + II  AD A+Y AK+ GR +   F
Sbjct: 175 --LTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 232

Query: 259 SDIENN 264
           +   N 
Sbjct: 233 TPEMNQ 238


>gi|300920917|ref|ZP_07137310.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
 gi|300412104|gb|EFJ95414.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
          Length = 452

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 22/258 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LV 66
            + +WL        F+   + I+  +    F A +  I+ +F+    ++ +Y    I +V
Sbjct: 199 MIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVV 258

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             L++++I +            I   L ++ N    ++  D L+ + N + F + L    
Sbjct: 259 SKLTVMVIFMC----------HIFSALRVTKN----IAHRDPLTNIFNRNYFFNELTVQS 304

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +      ++  DID+FK++ND +GHPVGD+VI  + + +         + R+GGEEF 
Sbjct: 305 ASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFG 364

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYR 239
                   + A  LA  +R+ +E    +         +TIS G +  + +    + I   
Sbjct: 365 VLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRL 424

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK++GRN+VV 
Sbjct: 425 ADNALYEAKETGRNKVVV 442


>gi|262173736|ref|ZP_06041413.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio mimicus MB-451]
 gi|261891094|gb|EEY37081.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio mimicus MB-451]
          Length = 461

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 105/204 (51%), Gaps = 7/204 (3%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           P Y +  ++   L +VI+    +L L        ++L  + ++++ LS+ D L+G+ N  
Sbjct: 258 PRYLIPGLVTGTLMVVIL---YALQLRRTVRLRTRQLEEANHKLTLLSQTDSLTGIHNRH 314

Query: 117 AFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            F + L     +++ L+++ FDID FK+IND +GH  GD  I  ++  +       M   
Sbjct: 315 YFFNQLTKERDHSKSLTLMVFDIDDFKRINDTYGHGAGDSAICLITACVRSALEPDMEFA 374

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R+GGEEFA    G + + + +LA  + + I   ++ ISS   + +TIS G A        
Sbjct: 375 RIGGEEFAILVHGKTAEASQLLAELICQRIAEKELMISSNTFVTLTISLGCAFYPSPTES 434

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
            T+ + AD  +Y AK  G+N+VV 
Sbjct: 435 PTL-HMADSLMYEAKGKGKNQVVF 457


>gi|261210921|ref|ZP_05925211.1| GGDEF family protein [Vibrio sp. RC341]
 gi|260839896|gb|EEX66496.1| GGDEF family protein [Vibrio sp. RC341]
          Length = 958

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 108/228 (47%), Gaps = 22/228 (9%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI------------- 95
           +++   + P +     ++    +++++  +SL++  I     +EL++             
Sbjct: 721 YVYRFTIEPHFWQRKEVIVLAGMLVLAFAVSLVMWRIRALKRRELYLVEQVALQTHKLRL 780

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148
              +  +LS+ D L+GL N  AF   L           +++SI   DID+FKQIND + H
Sbjct: 781 QAEKFEKLSKEDELTGLANRRAFDLYLKQAFSRTDNPPQQVSIALLDIDHFKQINDRYSH 840

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GD+ I  +S QL+   G    V R GGEEF     G  +  A      LR+ IE    
Sbjct: 841 IIGDQAIIAVSQQLLEYVGDKKRVARWGGEEFTILFFGEPKN-AWSYFEHLRRNIEQMDF 899

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + S  P + +T+S G A+    E   + +  AD AL  AKK GRNRVV
Sbjct: 900 S-SIVPGLAVTVSVGFADGSQAENYESALKLADHALLTAKKLGRNRVV 946


>gi|254500087|ref|ZP_05112239.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222441385|gb|EEE48063.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 616

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 18/190 (9%)

Query: 93  LFISYNRISQLSRI-------DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDY 138
           L    NR+ QL++        D L+GL N   F        S+L       ++ + D+D 
Sbjct: 160 LERENNRLFQLAKKVAKEAKEDALTGLSNRRHFEVEFKSWVSNLKDAGSDFAVFYIDLDR 219

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILAN 197
           FK +ND FGH  GD+++  ++D L  +      V R+GG+EF      G S  + + LA+
Sbjct: 220 FKSVNDTFGHDAGDRLLISVADMLRRLTNETDLVARIGGDEFVVLRPLGQSALDISSLAD 279

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256
            + +  E     +  G S   + S G+A           ++  AD ALY AK +G+ R  
Sbjct: 280 AVVQ--EMHAPFVFEGKSTFCSASVGVAIANANMDAPERVVSDADTALYHAKTNGKGRWS 337

Query: 257 CFSDIENNTC 266
            F+   +   
Sbjct: 338 FFTKEMHAEA 347


>gi|167950173|ref|ZP_02537247.1| hypothetical protein Epers_28446 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 466

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 50/195 (25%), Positives = 87/195 (44%), Gaps = 13/195 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKL-SIVF 133
           +  I G+++ E  ++   +   +  D L+GL N S F+  L  +        E L +++F
Sbjct: 80  VADILGNLI-ERHLARQSLEHQAFYDELTGLPNRSLFLDRLRHHLGGGRGQGEVLSAVMF 138

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEA 192
            D+D F+ IND  GH  GD++++  + ++         V RLGG+EF       ++    
Sbjct: 139 LDLDRFETINDALGHDHGDRLLSEAARRIAGCVRPQDTVARLGGDEFTVLLEEVANPATV 198

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSG 251
             +A  + + +E S      G  +  + S GIA     E     ++  AD A+Y AK  G
Sbjct: 199 THIAERIHRALEES--FNLDGRRVTTSTSIGIAFTDTLELSPDGLLRDADTAMYQAKAEG 256

Query: 252 RNRVVCFSDIENNTC 266
             R V F    ++  
Sbjct: 257 TGRTVIFDVGMHSAA 271


>gi|332532108|ref|ZP_08407991.1| GGDEF/EAL domain protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038449|gb|EGI74893.1| GGDEF/EAL domain protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 467

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 8/182 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYF 139
           +   +  ++      I +LS  D L+ LLN +AF+ +          E  +++F D+D F
Sbjct: 25  LLNEMENKVEQRTEEIYRLSNTDPLTNLLNRTAFLKNANRQLADNPQEPFALLFVDLDGF 84

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQIND+ GH VGDKV+  ++ ++  V    +F  R GG+EF   A    + E    A+ +
Sbjct: 85  KQINDSLGHKVGDKVLKEIARRISNVCNQQLFKCRWGGDEFLILATYQKQAELIEFADRV 144

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + I              ++ + GIA    H    +T+I  AD A+Y  K+  +  +  +
Sbjct: 145 LQSIGAEHETYKYQKW--VSATIGIAMYPEHGSDFNTLIRSADTAMYHQKRMAKGNINIY 202

Query: 259 SD 260
           +D
Sbjct: 203 ND 204


>gi|326794582|ref|YP_004312402.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326545346|gb|ADZ90566.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 426

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 116/238 (48%), Gaps = 15/238 (6%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS 88
           ++  +  ++ +    FI  +   Y+ L   Y L+  +   L+ + I+ T+ ++L +    
Sbjct: 178 LFLEVRKAVIVTIASFIVTLIGHYLALIQHYPLDDTVGVVLN-IGIAHTVYIVLLWTVVQ 236

Query: 89  ILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           +  E   ++ R+S L   + ID L+ +LN                 + +  +I+  DID+
Sbjct: 237 MRVEHTKTHERLSTLEQHAMIDQLTNVLNRRGIEDVFKHAEENWINHKQPYAILLIDIDH 296

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND +GH VGDKV+A  +  L  +      VGR GGEEF       S +E   LA  
Sbjct: 297 FKQVNDQYGHLVGDKVLADFAALLNKLTVASNSVGRWGGEEFIILVKSRSNEECFSLAEK 356

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +R+ +E S +    G    ++IS G+     ++ +     +AD  LY AKK+GRN+V+
Sbjct: 357 VRQTVERSTL----GGLKELSISIGVGYANEEKSLFETFQQADSYLYAAKKTGRNKVI 410


>gi|313618171|gb|EFR90255.1| ggdef domain-containing protein [Listeria innocua FSL S4-378]
          Length = 375

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 110/236 (46%), Gaps = 11/236 (4%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           FS FIA +I      L+Y       G     VE +   ++    +LL+ Y    I K   
Sbjct: 140 FSKFIALIILNFPAILYYFVNNFDEGRILRGVEIVEYFLLFFVTALLVFYACNYIDKSNL 199

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
           +  N +++ +  D L+ L N   F               + LS+   DID+FK+IND  G
Sbjct: 200 VIQN-LTETAMTDSLTNLSNMRFFTQQFAWIFNKSQKRKKALSLFIIDIDHFKEINDFHG 258

Query: 148 HPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  G+ V+A  S  L    F       R+GGEEFA        ++AA++A+ LR  IE +
Sbjct: 259 HQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTEQAALIADFLRDEIERA 318

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +    +  S ++T+S G+A   +      ++   ADQALY AK++GRN++    + 
Sbjct: 319 KFPY-NPVSGNVTVSIGVASMGYNYRTTESLFEAADQALYQAKQNGRNQIAIHQEE 373


>gi|313679427|ref|YP_004057166.1| diguanylate cyclase/phosphodiesterase [Oceanithermus profundus DSM
           14977]
 gi|313152142|gb|ADR35993.1| diguanylate cyclase/phosphodiesterase [Oceanithermus profundus DSM
           14977]
          Length = 742

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 19/173 (10%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145
             +S  R+  LS  D L+GLLN   F+  L             L++   D+D FK  ND 
Sbjct: 316 RLLSQERLRYLSFHDPLTGLLNRRGFMEHLRTALPLAARERWNLAVAMVDMDDFKLYNDR 375

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GD+++   +  +         V R+GG+EFA     ++ + A      +R+ +  
Sbjct: 376 FGHLAGDRLLREAARVMKEHLRASDVVARIGGDEFALLLQNTTIEGAGFALERIREAMAK 435

Query: 206 SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
                      +  +S G+A      +    ++  AD ALY +K   R  VV 
Sbjct: 436 MP---------YAGVSIGVAFFPDDAQEPEELLRSADLALYDSKTQKR--VVF 477


>gi|311279803|ref|YP_003942034.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Enterobacter cloacae SCF1]
 gi|308748998|gb|ADO48750.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Enterobacter cloacae SCF1]
          Length = 663

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 14/188 (7%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +          ++ IV+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRVLANTDTITGLPNRNAINDMISEAIATRDETQVGIVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196
           ++ND +GH  GD+++  ++  ++        + RLGG+EF   A  +S    E  A+ + 
Sbjct: 279 KVNDAYGHMFGDQLLQSVALSILSCLEEGQTLARLGGDEFIVLATNTSQGALEAMASRIL 338

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           N LR+      I + SG S+ I++        H     ++I  AD A+Y AK+ GR +  
Sbjct: 339 NRLREPFRIGLIEVYSGCSLGISL-----APQHGSDRESLIRNADTAMYTAKEGGRGKFC 393

Query: 257 CFSDIENN 264
            F    N 
Sbjct: 394 VFLPEMNK 401


>gi|78485130|ref|YP_391055.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78363416|gb|ABB41381.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2]
          Length = 502

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 97/209 (46%), Gaps = 17/209 (8%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKE------LFISYNRISQLSRIDCLSGL 112
           + L ++L     L++  + +  +L   S  ++K       L      +   S ID L+  
Sbjct: 296 FWLHWVL-NIAGLLVFLVLMYFILKRYSDRLMKSMNTINVLQQKNEAMKYNSEIDELTQA 354

Query: 113 LNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
            N   F   L            +S++F+DID+FKQIND  GH VGD+++  LS  +    
Sbjct: 355 YNRRYFNQKLRQLLHYQDNRHPVSVMFYDIDFFKQINDTHGHLVGDEILKSLSHFIRGHL 414

Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
            +   + R GGEEFA     +  Q+A   A +LR+ +E           + +TIS  + E
Sbjct: 415 RSEDILVRWGGEEFAVVLKEAHLQQAVEKAEELRQAVEEKTWP----NDVKMTISISVIE 470

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRV 255
               + + ++  R D  LY AK+SGRNRV
Sbjct: 471 LHENDNLKSLQARLDDLLYNAKESGRNRV 499


>gi|293376697|ref|ZP_06622920.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sanguinis
           PC909]
 gi|292644654|gb|EFF62741.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sanguinis
           PC909]
          Length = 703

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 61/193 (31%), Positives = 98/193 (50%), Gaps = 8/193 (4%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIV 132
           +S+L  YI+ ++  E    Y + + L+R D L+GL N    +          +N++  ++
Sbjct: 509 LSILASYIAIAL--ENAKLYKKANYLARYDGLTGLNNRVQVLKKGEQMLKSAHNDRCCVL 566

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK+IND FGH VGD+VI  +   L     + + +GR GGEEF     G +E +A
Sbjct: 567 MLDIDHFKKINDTFGHLVGDEVIQKVGLLLTKKVNSNIHIGRYGGEEFVIFLQGYTESKA 626

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSG 251
            + A  +R+ +    +         IT S G+ E           I+ AD A+Y +K +G
Sbjct: 627 LVFAEKIREELLTLSVKRIKEHFPSITASFGVYEYEQGSLSAEEGIHFADLAMYYSKTTG 686

Query: 252 RNRVVCFSDIENN 264
           RN+V  +S +EN 
Sbjct: 687 RNKVTPYSMLENK 699


>gi|284046162|ref|YP_003396502.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Conexibacter woesei DSM 14684]
 gi|283950383|gb|ADB53127.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Conexibacter woesei DSM 14684]
          Length = 684

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 11/167 (6%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +++  +  D L+GL N  AF   L         +   L +   D+D FK +ND +GH  G
Sbjct: 304 QLAARATTDPLTGLANQRAFQERLAGETERARRHGRNLGLALIDLDGFKAVNDTYGHQAG 363

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  ++ +          + R+GG+E A     +   E    A  +R++I +      
Sbjct: 364 DDVLVTIARRAAGTIRAGELLARIGGDELALLLPEADADETHAAAERIRQLIGHEPFEAV 423

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 ++IS G+++         ++  AD ALY AK  GR+ V  F
Sbjct: 424 G----SLSISVGVSDLALGGDAEGMMRTADDALYWAKAQGRDVVARF 466


>gi|258516235|ref|YP_003192457.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779940|gb|ACV63834.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 550

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 10/246 (4%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           +I F+   +  +   + IA      +    FY  +Y     L   II   + L+  +++G
Sbjct: 107 VILFAFTRNKIVGCFVAIACGLSLVLIDIYFYKYDY-PNRTLESDIIFTGVMLISAWLTG 165

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140
            I          +  ++  D L+GL NH        + +E+       +S++ FDID+FK
Sbjct: 166 GITSIEREIREHLIDMANRDGLTGLYNHRFLQEYFKTLSEETNNTVRNISLILFDIDHFK 225

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
             ND FGH  GD+++  +S+ +      P  V R GG+EF    +      A  LA+++ 
Sbjct: 226 YFNDTFGHTAGDEILLNVSNIVKNHISYPSIVARYGGDEFCILLIDYDLSSAYKLASEMS 285

Query: 201 KIIENSQI-NISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + +E   I N    P+  I+I+AGIA    H +    +I  ADQALY AKK+ +N+V  +
Sbjct: 286 EKVEQLVIKNTEKLPNGKISITAGIANYPSHTKHCEKLIDLADQALYKAKKTSKNKVELY 345

Query: 259 SDIENN 264
            ++ ++
Sbjct: 346 FNVLDS 351


>gi|22126440|ref|NP_669863.1| hypothetical protein y2559 [Yersinia pestis KIM 10]
 gi|108812533|ref|YP_648300.1| hypothetical protein YPN_2372 [Yersinia pestis Nepal516]
 gi|229902917|ref|ZP_04518034.1| hypothetical protein YP516_2671 [Yersinia pestis Nepal516]
 gi|21959431|gb|AAM86114.1|AE013858_4 hypothetical [Yersinia pestis KIM 10]
 gi|108776181|gb|ABG18700.1| diguanylate cyclase with PAS/PAC sensor [Yersinia pestis Nepal516]
 gi|229680364|gb|EEO76463.1| hypothetical protein YP516_2671 [Yersinia pestis Nepal516]
 gi|320015517|gb|ADV99088.1| hypothetical protein YPC_2531 [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 451

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 8/179 (4%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDI 136
             +    +         +   +  D L+GL+N       L     +L+      + + D+
Sbjct: 269 AVVVFQDVTRARHEQRALQYQASHDMLTGLINRRRLEERLTLAINQLAHDGQHILCYVDL 328

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK +NDN GH  GD V+  ++  +         V RLGG+EFA        + AA + 
Sbjct: 329 DYFKDVNDNAGHEAGDMVLRMVAQTMQQAVRENDIVARLGGDEFAIVLFNCPSKSAAEIL 388

Query: 197 NDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNR 254
             +   I   Q +   G S  +T S G I      E  S  +  AD A Y AK +GRN+
Sbjct: 389 EQVVADIAAIQFHWH-GQSYVLTASLGAIPLTQQTESASQAMRLADIACYKAKHAGRNQ 446


>gi|327480102|gb|AEA83412.1| GGDEF family protein [Pseudomonas stutzeri DSM 4166]
          Length = 516

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 106/245 (43%), Gaps = 16/245 (6%)

Query: 18  NLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISIT 77
           N   F+  +  +++  + S  I++ I        + G  P        V +    +  + 
Sbjct: 284 NAVPFAILSLAVFW--WLSKLISSPIRALADTAEHWG-APEAAQRISTVNSWYFEVARLK 340

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFF 134
           +++L G    S+L++   +   +   S  D L+GL N      +L  +   ++  + +  
Sbjct: 341 VAMLTGV---SLLQQKMGA---LEAASMTDPLTGLRNRRGLELALKQFELLDQGYAALAL 394

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FKQ+ND  GH VGD+V+ FL+ ++         + R+GGEEF      +    A++
Sbjct: 395 DIDHFKQVNDQHGHDVGDEVLRFLAAEMRECSRPTDVLCRMGGEEFLMLLPETDATGASV 454

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
            A  L   +  +     +  +     S GIA              AD ALY AK++GR+R
Sbjct: 455 AAERLLTRLRQTTSPTGTTVT----ASVGIAFSGDYPNADATFKAADAALYQAKRAGRDR 510

Query: 255 VVCFS 259
           V   S
Sbjct: 511 VAIAS 515


>gi|197337560|ref|YP_002157973.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
 gi|197314812|gb|ACH64261.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
          Length = 345

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 70/275 (25%), Positives = 115/275 (41%), Gaps = 37/275 (13%)

Query: 6   KDFLSIWLCHEKNLESFSPH-TFMIYFSI----FFSIFIATVIFIANIFLFYIGLTPFYG 60
            D   IW  +  N+   SP    ++ +SI      +IF+ T     ++  +   L     
Sbjct: 81  NDMTEIWQTYLLNIPEISPLPVIIVLYSIVMCGLSAIFVLTRSNNTDLASYTCLLYSSLT 140

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
                V+ +S  + SI   LLL YI  +             +L+ ID L+G+    A  S
Sbjct: 141 FSLFSVDYISSTMFSIAGLLLLLYIITAS-----------HELAFIDQLTGIPGRRALES 189

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            +       +I   D+D+FK+ ND +GH  GD V+  ++  +    G    V R GGEEF
Sbjct: 190 EMKHLGRTYTIAMLDVDHFKKFNDTYGHDTGDDVLKLVASIMAQT-GGNAKVYRYGGEEF 248

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPS--------------------IHITI 220
                G + +++     +LR+ I +  + I    +                    +++TI
Sbjct: 249 TVLFKGKTAKQSLEYLEELREDIADYDLIIRDTSTRPKDNKEGQAKRGKANKTKVVNVTI 308

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S G+A+         +I  AD+ALY AK+ GRN V
Sbjct: 309 SIGVADSEDLRKPQLVIKAADEALYRAKEGGRNCV 343


>gi|117620507|ref|YP_855273.1| diguanylate cyclase/phosphodiesterase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561914|gb|ABK38862.1| diguanylate cyclase/phosphodiesterase domain 2 [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 334

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 5/165 (3%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
            +        +++QL+  D L+GLLN +A         +  +I F D+D FKQ+NDN GH
Sbjct: 144 DITHEKEYEQQLAQLAHRDPLTGLLNRTALQRQFPQEYQ--AICFIDLDDFKQVNDNLGH 201

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQ 207
             GD+++  L+ +L       + +GRLGG+EF      +S+    + LA      I ++ 
Sbjct: 202 RAGDELLIALTRRLRDCCEEGVKIGRLGGDEFVLLLPWTSDDPRTSHLARQCINAI-STP 260

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             + +G +  + +S GIA    ++  ST + RADQA+Y  K+SG+
Sbjct: 261 FELPNGDA-SVGLSMGIAAIRPQDDFSTALARADQAMYRVKRSGK 304


>gi|55980767|ref|YP_144064.1| GGDEF domain-containing protein [Thermus thermophilus HB8]
 gi|55772180|dbj|BAD70621.1| GGDEF domain protein [Thermus thermophilus HB8]
          Length = 316

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 19/174 (10%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           +EL+       + +    L+GL N  A   +L              ++V  D+D FK++N
Sbjct: 148 RELYGQVRFWRERALTCPLTGLPNRRALEMALEREAARVERGGPPFALVLLDLDGFKRVN 207

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+ +  ++  LV        V R GG+EFA    G+ E+EA  +A  L + +
Sbjct: 208 DEGGHREGDRYLRRVARALVSGVRRGDLVARWGGDEFAVLLPGTGEKEAVEVAERLGRRL 267

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +             ++ S G+A       +  +  RADQALY AK  G+ RVV 
Sbjct: 268 QEE----------GVSASLGVAVYAG--DLEDLFLRADQALYRAKALGKGRVVL 309


>gi|28901366|ref|NP_801021.1| sensory box/GGDEF family protein SrcC [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260362921|ref|ZP_05775790.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus K5030]
 gi|260880208|ref|ZP_05892563.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus
           AN-5034]
 gi|260895325|ref|ZP_05903821.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus
           Peru-466]
 gi|28809913|dbj|BAC62854.1| ScrC (sensory box/GGDEF family protein) (involved in swarmer cell
           regulation) [Vibrio parahaemolyticus RIMD 2210633]
 gi|308085558|gb|EFO35253.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus
           Peru-466]
 gi|308091669|gb|EFO41364.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus
           AN-5034]
 gi|308111922|gb|EFO49462.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus K5030]
          Length = 774

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 11/184 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           ++    S   ++  ++ D L+ L N S     L            K+ ++F D+D+FKQI
Sbjct: 333 IERRKASEKELAFQAKYDTLTELPNRSYGSERLALELIRASRTGSKVLVMFIDLDHFKQI 392

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRK 201
           ND+ GH VGD+++   + +L  V      + R+GG+EF            A  +A+ +  
Sbjct: 393 NDSMGHFVGDEILKLSAQRLQNVARKTDLLARIGGDEFLLVIPDLPDNDTAKRVASSVLS 452

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
               S+  + +     +T S G++      +    ++  AD A+Y  K+ GR+    ++ 
Sbjct: 453 AF--SEPFVWNNHEFFLTGSVGMSVFPDDGDNAEQLLACADMAMYRVKQDGRDAFCFYNH 510

Query: 261 IENN 264
             N 
Sbjct: 511 NMNQ 514


>gi|126090205|ref|YP_001041686.1| hypothetical protein Sbal_4568 [Shewanella baltica OS155]
 gi|126174498|ref|YP_001050647.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|125997703|gb|ABN61778.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|125999861|gb|ABN63931.1| hypothetical protein Sbal_4568 [Shewanella baltica OS155]
          Length = 325

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 113/257 (43%), Gaps = 23/257 (8%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           I+ C+E   +     +  ++  IFF +F      I +     I L     +  + VE++ 
Sbjct: 80  IFSCYEIGYKGLIYISPTVF--IFFFLFNLKSSLILSTLYACISL-----VSALQVESVE 132

Query: 71  LVI---ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---- 123
           LV+   ++    ++   I   I+ +   +   +  L+  D L+G LN     + L     
Sbjct: 133 LVLRFSVATFDCIIFAAIFAHIVNKQRQA---LVHLANTDELTGALNRKQLKTKLELSVY 189

Query: 124 ---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                    S++  DID+FK +NDNFGH +GD+++   S  +         + R GGEEF
Sbjct: 190 EYQQQQIPASLLLIDIDFFKMVNDNFGHIMGDQLLNKFSQHIQKKIRKDDLLFRFGGEEF 249

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                 +  + AAI+A DLR+ IE             +T S G+A+    + + T +   
Sbjct: 250 LILLPNTQFESAAIVAEDLRRSIEEQHF---LDQHPQVTCSIGVADLRQADTLDTWLKTC 306

Query: 241 DQALYVAKKSGRNRVVC 257
           D  LY AK +GRN VV 
Sbjct: 307 DNLLYTAKNAGRNCVVA 323


>gi|254850976|ref|ZP_05240326.1| response regulator receiver protein [Vibrio cholerae MO10]
 gi|21885295|gb|AAL59701.1| putative response regulator [Vibrio cholerae]
 gi|254846681|gb|EET25095.1| response regulator receiver protein [Vibrio cholerae MO10]
 gi|259156308|gb|ACV96254.1| response regulator receiver protein [Vibrio cholerae Ind4]
          Length = 309

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 8/173 (4%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNE---KLSIVFFDIDYFKQINDN 145
           L    + +  L+ +D L+G+ N   F +     L  +      L+++  DIDYFK+ ND 
Sbjct: 134 LKRQADLLRSLAFLDGLTGIYNRRYFDNVLSIQLAQHRRKLSPLAVLMIDIDYFKKYNDT 193

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GD  +  ++  L         V R GGEEF      +    A  +A  +   +  
Sbjct: 194 FGHLAGDDALRKVASALKHSVRQADMVARYGGEEFVMLLADTDINGAVTVAKKMLHHVLE 253

Query: 206 SQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVC 257
             I     P+  ++IS GIA     +   + II  ADQ LY++K+ GRN    
Sbjct: 254 LDIAHPQTPATKLSISVGIAVADEAKGYDSNIIELADQQLYLSKQRGRNTYSV 306


>gi|320335476|ref|YP_004172187.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
 gi|319756765|gb|ADV68522.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211]
          Length = 348

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 8/185 (4%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIV 132
           +T+   LG  S  + +    +   +  L+  D L+GL N  A    L ++   +   +++
Sbjct: 160 LTLVATLGVYSERLARTRAEART-LWDLAHTDPLTGLHNRRAVYPHLDAHLTGSAPCALL 218

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK++ND +GH  GD  +  ++  L         V R GGEEF     G +  +A
Sbjct: 219 LLDLDHFKRVNDEYGHHTGDLALQHVARVLADHVRPQDVVARWGGEEFLILLPGMNAADA 278

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           A  A+ L + + +++    +     +TIS G+A     +  +T   RAD  LY AK++GR
Sbjct: 279 ADAAHRLCRAVRDAR----ADDVPPLTISIGVALAAPGDTPTTWTCRADTHLYRAKQNGR 334

Query: 253 NRVVC 257
           +R   
Sbjct: 335 DRAEV 339


>gi|224500262|ref|ZP_03668611.1| hypothetical protein LmonF1_11524 [Listeria monocytogenes Finland
           1988]
 gi|254899391|ref|ZP_05259315.1| hypothetical protein LmonJ_06244 [Listeria monocytogenes J0161]
 gi|254912470|ref|ZP_05262482.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936797|ref|ZP_05268494.1| GGDEF domain-containing protein [Listeria monocytogenes F6900]
 gi|258609392|gb|EEW22000.1| GGDEF domain-containing protein [Listeria monocytogenes F6900]
 gi|293590452|gb|EFF98786.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 375

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 109/238 (45%), Gaps = 12/238 (5%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           FS F+A +I      L+Y       G      E +   ++    +LL+ Y    I K   
Sbjct: 140 FSRFVALIILNFPAILYYFVNNFDEGRILRGFEIIEYFLLFFVTALLVFYACNYIDKSNL 199

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
           +  N +++ +  D L+ L N   F               + LS+   DID+FK+IND  G
Sbjct: 200 VIQN-LTETAMTDSLTNLPNMRFFTQQFGWIFTKSQKRKKSLSLFIIDIDHFKEINDFHG 258

Query: 148 HPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  G+ V+A  S  L    F       R+GGEEFA        ++AA++A+  R+ +E +
Sbjct: 259 HQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTEQAALIADFFREEVERA 318

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS-DIE 262
           +    +  S  +T+S G+A          ++   ADQALY AK++GRN++     +IE
Sbjct: 319 KFPY-NPASGKVTVSIGVASASSNFSTTESLFEAADQALYQAKQNGRNQIAVHQGEIE 375


>gi|152981991|ref|YP_001353685.1| hypothetical protein mma_1995 [Janthinobacterium sp. Marseille]
 gi|151282068|gb|ABR90478.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 876

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 11/180 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFK 140
             + +   +  +I   +  D L+ L N    +++L +  E        L+++F D+D+FK
Sbjct: 427 RDITKRKQTELQIEYQAMHDMLTDLPNRRFLVNTLNTAMETSRLRQSSLTMLFCDLDFFK 486

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND  GH  GD+ +  +S ++V    T  FV R GG EF      SS  EA I AN + 
Sbjct: 487 SVNDTHGHDFGDQCLIEISKRIVTALPTADFVARFGGNEF-VILTNSSLAEATIKANTIM 545

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
             +    I       + I  S GIA+     +  + +I  AD A+Y AK+ GRNR   + 
Sbjct: 546 AAVSERLIF--DNVVVKIQTSIGIAQLNAGHQSPADLIRDADAAMYQAKERGRNRTEIYD 603


>gi|126175435|ref|YP_001051584.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS155]
 gi|125998640|gb|ABN62715.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS155]
          Length = 684

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
             IL +   + +++ +++  D L+GL N +  + ++         +    +++F D+D F
Sbjct: 232 NQILIQFSQTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRSRVHKRSFALMFIDLDRF 291

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND+ GH +GD+ +A ++  L    G    V RLGG+EF   A    +  +AA   + 
Sbjct: 292 KNINDSLGHALGDQFLARIARILERFVGDKGTVSRLGGDEFVILADTVHTPDQAADFVDK 351

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L  +I+ +     +  +IH   S GI+           +I  AD A+Y AK +G N+   
Sbjct: 352 L--LIQLNVPIQLNEHAIHPAASIGISIYPEDGNSAEDLIRHADIAMYSAKAAGSNQWAF 409

Query: 258 FSDIENNTC 266
           F        
Sbjct: 410 FKQQMTERA 418


>gi|322834528|ref|YP_004214555.1| diguanylate cyclase [Rahnella sp. Y9602]
 gi|321169729|gb|ADW75428.1| diguanylate cyclase [Rahnella sp. Y9602]
          Length = 364

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 111/246 (45%), Gaps = 21/246 (8%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTP----------FYGLEYILVENLSLVIISITI 78
           +  S+    FI+ +    N   F +   P          F  +E IL   +SL +I + +
Sbjct: 102 LLVSLLSIFFISAIALSDNFLAFCLHAVPSTLCVIFLDDFQHVERILF-TVSLPLIGLWL 160

Query: 79  SLLL----GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSI 131
             L+       +  ++  L+    + S LS +D L+GL N     + L    + +    +
Sbjct: 161 HHLMLKRSDEFTRRMVSNLYSEREKFSDLSMLDPLTGLYNRRGLQNKLETLFNQDSGHYV 220

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK  NDN+GH +GD+ +  +S  +     +   V R GGEEF        ++ 
Sbjct: 221 MLLDIDHFKAYNDNYGHTMGDQALVRVSAAIRDAVRSRDVVVRYGGEEFLVLMSNVKQEH 280

Query: 192 AAILANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           A  +A  ++  +    I       +  H+T+SAG+A     + I  +  +AD +LY AK 
Sbjct: 281 AVRMAERIQNKVLGLNIPHLFNVEVSTHVTVSAGLAALEDGDFIKAL-GKADASLYNAKN 339

Query: 250 SGRNRV 255
           SGRN++
Sbjct: 340 SGRNKI 345


>gi|288922793|ref|ZP_06416961.1| diguanylate cyclase [Frankia sp. EUN1f]
 gi|288345866|gb|EFC80227.1| diguanylate cyclase [Frankia sp. EUN1f]
          Length = 552

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 27/212 (12%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
            YGL   L   L+ ++    I ++    +  ++ ++  ++ R+   +  D L+GL N   
Sbjct: 338 LYGLPLYLAFCLAGLVTLRQIVVIAE--NRRLVSDVQRAHQRLEYQAYHDGLTGLANRLL 395

Query: 118 FISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           F  +L         +   + ++F DID+FK +ND +GH  GD+++  ++ +L        
Sbjct: 396 FTRALEEAVTAHSRHGTPVVVLFCDIDHFKTVNDTYGHSAGDELLRTVAARLRTAIRHGD 455

Query: 171 FVGRLGGEEFAAAALGSS---------EQEAAILANDLRKIIENSQINISSGPSIHITIS 221
              R+GG+EFA    G+          EQ A  +   +R+ I        +G    I IS
Sbjct: 456 LAARVGGDEFAVLLAGTDTGTSPQTVGEQCARRITTGMRRPI------TLAGHPQQIQIS 509

Query: 222 AGIAERCHKEP---ISTIIYRADQALYVAKKS 250
            G+A    ++P      I+++AD  +Y AK+ 
Sbjct: 510 IGLAIADGRQPCTSAEQILHQADTGMYDAKRR 541


>gi|262165010|ref|ZP_06032748.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio mimicus VM223]
 gi|262027390|gb|EEY46057.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Vibrio mimicus VM223]
          Length = 461

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 105/204 (51%), Gaps = 7/204 (3%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           P Y +  ++   L +VI+    +L L        ++L  + ++++ LS+ D L+G+ N  
Sbjct: 258 PRYLIPGLVTGTLMVVIL---YALQLRRTVRLRTRQLEEANHKLTLLSQTDSLTGIHNRH 314

Query: 117 AFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            F + L     +++ L+++ FDID FK+IND +GH  GD  I  ++  +       M   
Sbjct: 315 YFFNQLTKERDHSKSLTLMVFDIDDFKRINDTYGHGAGDSAICLITACVRSALEPDMEFA 374

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R+GGEEFA    G + + + +LA  + + I   ++ ISS   + +TIS G A        
Sbjct: 375 RIGGEEFAILVHGKTAEASQLLAELICQRIAEKELMISSNTFVTLTISLGCAFYPSPTES 434

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
            T+ + AD  +Y AK  G+N+VV 
Sbjct: 435 PTL-HMADSLMYEAKGKGKNQVVF 457


>gi|104780495|ref|YP_606993.1| signal transduction protein [Pseudomonas entomophila L48]
 gi|95109482|emb|CAK14183.1| putative signal transduction protein; GGDEF/EAL domain [Pseudomonas
           entomophila L48]
          Length = 754

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 10/179 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQ 141
           +L +L  +   + Q +  D L+GL+N   F       L   +     L+++F DID+FK+
Sbjct: 275 LLSQLDQARVSLQQAAHFDALTGLVNRRGFNQVFAERLAEQSANDGMLAVMFLDIDHFKR 334

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND+ GH  GD+++  ++  +         V R GG+EF      ++  EA  LA  + +
Sbjct: 335 INDSLGHVAGDELLKVIAGHIKAATRGNDLVSRFGGDEFCIVTSLNNRDEARHLAQRIMQ 394

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++   I++ +G  + +T S GI+           ++  AD ALY +K  GRN +  FS
Sbjct: 395 RMKE-PIDL-TGRRMVMTTSIGISIFPDDGHSTEELLKNADLALYQSKGCGRNSLHFFS 451


>gi|23010494|ref|ZP_00051163.1| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 210

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 96/190 (50%), Gaps = 13/190 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----------NEKLSIVFFD 135
           S S +++L  +       S  D L+GL N  +F  +L              +  S++  D
Sbjct: 15  SRSEIEQLRETLEAARLESLTDALTGLGNRKSFEEALHRTVNVPPAPGGTGKPTSLIVLD 74

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           IDYFK+ ND +GH  GD+V+  ++  +   V      + R GGEEF      +  +EA  
Sbjct: 75  IDYFKRFNDLYGHLTGDQVLRLVAIVMREHVVQAGATLARFGGEEFGIVLPETDLEEARA 134

Query: 195 LANDLRKIIENSQ-INISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           +A  +R  + + + +  S+G S+  +T+S GIA +   +   +++ RAD  L+ AK++GR
Sbjct: 135 VAERVRTSVTSRELVKRSTGESLGKVTVSLGIATQHGDDNAVSLLERADACLFAAKRAGR 194

Query: 253 NRVVCFSDIE 262
           +R +  +++ 
Sbjct: 195 DRTLDETEVM 204


>gi|298249673|ref|ZP_06973477.1| diguanylate cyclase [Ktedonobacter racemifer DSM 44963]
 gi|297547677|gb|EFH81544.1| diguanylate cyclase [Ktedonobacter racemifer DSM 44963]
          Length = 713

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 84/183 (45%), Gaps = 11/183 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDY 138
            G +L EL   Y   +  + ID ++ L NH A +S          + +    I+F D+D+
Sbjct: 529 QGVLLLELEKLYREQAFAATIDPVTELPNHRAVMSYIDATLARAQAEHSSFIIMFIDLDH 588

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND +GH  GD ++  ++ +L         +GR GGEEFA     S        A  
Sbjct: 589 FKSVNDQWGHRAGDTILYEVAQRLHANLHQEDVIGRYGGEEFALICTNSDLPTTRKRARQ 648

Query: 199 LRKIIENSQINIS---SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           L  I+       S   +   I +T S GIA    H      +I +AD+A+Y AK+ GRN 
Sbjct: 649 LCTILAERPFLCSVRDNTYEISVTASIGIAAYPRHGTTRDALIEQADRAMYRAKQKGRNC 708

Query: 255 VVC 257
           + C
Sbjct: 709 ICC 711


>gi|293396625|ref|ZP_06640901.1| cellulose synthesis regulatory protein [Serratia odorifera DSM
           4582]
 gi|291420889|gb|EFE94142.1| cellulose synthesis regulatory protein [Serratia odorifera DSM
           4582]
          Length = 561

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 14/204 (6%)

Query: 65  LVENLSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL- 122
           ++  L ++ +  + +LLL Y +   +++ +      ++  +  D L+ L N  AF     
Sbjct: 351 IISVLLIMWLVFSCALLLAYQVILRLVRRMSDLQGNLAIRASYDTLTRLYNRGAFFEKAY 410

Query: 123 ------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                  + N   S++  D+D+FK +ND +GH  GD+ +A  +  ++        VGR+G
Sbjct: 411 AIVEKCRAINRPYSVIQIDLDHFKFVNDCYGHLTGDRTLATTARLVLGAVRQHDVVGRVG 470

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236
           GEEF     G+++  A+ +A  +R  +E + I       I +T S G+A  C  E  ST 
Sbjct: 471 GEEFCVILPGTTKSVASQIAERIRASLEGAMILTDDNLPIGVTASLGVA--CADEDGSTA 528

Query: 237 IYR----ADQALYVAKKSGRNRVV 256
           +      AD+ LY AKK+GRN+V+
Sbjct: 529 LNDLRMIADRRLYTAKKNGRNQVI 552


>gi|222106622|ref|YP_002547413.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221737801|gb|ACM38697.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 656

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 78/179 (43%), Gaps = 9/179 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           EL    NR+  ++  D L+GL N   F   L +             I+  D+D FK +ND
Sbjct: 214 ELKSQNNRLEYVAHHDSLTGLPNRILFRQDLEARLVSAKAGGPPAIILLLDLDGFKDVND 273

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH +GD ++  ++ +LV +      V RLGG+EFA  + G +E +A   A  L    E
Sbjct: 274 TLGHDIGDALLRMVASRLVDIKDHGDLVCRLGGDEFAILSTGLTETQAMDFATHLMH--E 331

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
              + +     I I    G+A    +     +  RAD ALY AK  G +    F +   
Sbjct: 332 LGLVYLVGDQEIKIGTCVGVAIFNDEPDTDELFKRADLALYEAKALGPSHACVFENQMQ 390


>gi|328469301|gb|EGF40247.1| sensory box/GGDEF family protein SrcC [Vibrio parahaemolyticus
           10329]
          Length = 774

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 23/243 (9%)

Query: 43  IFIANIFLFYIGLTPF---YGLEYILVENLSLVIISITISL------LLGYISGSILKE- 92
           IF + +F+F + +        L Y  + N + + + I +        +L   +  + KE 
Sbjct: 274 IFTSRLFIFGLSILAVMIVIALCYAFIANNNKLELKIKLEEEKKRKDILSQQNHKLTKEI 333

Query: 93  --LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
                S   ++  ++ D L+ L N S     L            K+ ++F D+D+FKQIN
Sbjct: 334 ERRKASEKELAFQAKYDTLTELPNRSYGSERLALELIRASRTGSKVLVMFIDLDHFKQIN 393

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKI 202
           D+ GH VGD+++   + +L  V      + R+GG+EF            A  +A+ +   
Sbjct: 394 DSMGHFVGDEILKLSAQRLQNVARKTDLLARIGGDEFLLVIPDLPDNDTAKRVASSVLSA 453

Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              S+  + +     +T S G++      +    ++  AD A+Y  K+ GR+    ++  
Sbjct: 454 F--SEPFVWNNHEFFLTGSVGMSVFPDDGDNAEQLLACADMAMYRVKQDGRDAFCFYNHN 511

Query: 262 ENN 264
            N 
Sbjct: 512 MNQ 514


>gi|260777645|ref|ZP_05886538.1| predicted signal transduction protein [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605658|gb|EEX31943.1| predicted signal transduction protein [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 825

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 89/179 (49%), Gaps = 10/179 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQ 141
            +K+L IS  ++ +L+ ID L+G+ N S   + L S  EK        +++F D+D FK+
Sbjct: 383 DIKQLEISSMQLERLAHIDSLTGIPNRSRLDAQLDSCIEKCKTDKSKYAVLFVDLDDFKR 442

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH  GD+++  +S     +      + R GG+EF         +EA + A  +++
Sbjct: 443 INDKYGHHAGDELLKAVSATFSKLKRDDEILVRFGGDEFVFGFPIVEVEEANLRAERIQE 502

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I    +    G  +  + S GIA    H    S ++  +D ALY +K+  + ++  F+
Sbjct: 503 AIAVPILFH--GIQLSTSCSIGIAIFPEHGANSSELLSHSDVALYTSKEKTKGQIQLFT 559


>gi|241767242|ref|ZP_04764984.1| diguanylate cyclase with GAF sensor [Acidovorax delafieldii 2AN]
 gi|241362103|gb|EER58214.1| diguanylate cyclase with GAF sensor [Acidovorax delafieldii 2AN]
          Length = 369

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 8/184 (4%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVF 133
           L       ++ EL  +  R++ L+  D L+GL N  +F   L               ++ 
Sbjct: 186 LANDRQARMVLELDEARERMAVLAHTDVLTGLANRRSFTERLRQQLALLQRGGAPACLLM 245

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID FKQ+ND  GH VGD  +   +     VF     V R GGEEF A    ++  E  
Sbjct: 246 MDIDRFKQVNDVHGHHVGDDALRHFAATCREVFRASDVVSRWGGEEFLALLPATTLAEGQ 305

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           ++A  L      +       P ++++ S G+       P+   +   D ALY AK  GRN
Sbjct: 306 VVAQRLHAA-LAAAAVPDVAPPLYLSASMGLCSFDPARPLDLTLRGLDAALYAAKTQGRN 364

Query: 254 RVVC 257
           R V 
Sbjct: 365 RTVL 368


>gi|28867636|ref|NP_790255.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213967820|ref|ZP_03395967.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
 gi|301382457|ref|ZP_07230875.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato Max13]
 gi|302061151|ref|ZP_07252692.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato K40]
 gi|302132056|ref|ZP_07258046.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|28850871|gb|AAO53950.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213927596|gb|EEB61144.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
          Length = 897

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + +  ++  RI +L+  D L+ L N  AFI +L        +  +S++  DID FK+IN
Sbjct: 454 DITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDERFARDTDTPMSLLLVDIDNFKRIN 513

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++  L+ +L         + R    EFA     + ++     A+ +   +
Sbjct: 514 DSLGHQTGDKLLISLARRLRNTLSPTDVLARFASNEFAVLLDNTGQEAGQATASQVLATL 573

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I +T S G+A    H     T++  A  AL+ AK +G+++V  F++  
Sbjct: 574 DKPMF--VDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFTEAL 631

Query: 263 NNTC 266
           N   
Sbjct: 632 NAEA 635


>gi|332534211|ref|ZP_08410058.1| sensory box/GGDEF family protein [Pseudoalteromonas haloplanktis
            ANT/505]
 gi|332036377|gb|EGI72847.1| sensory box/GGDEF family protein [Pseudoalteromonas haloplanktis
            ANT/505]
          Length = 1454

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 11/189 (5%)

Query: 85   ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
            I  + L E   + N +  L+  D L+ L N S    ++          N + +++F D+D
Sbjct: 1006 IVITDLTEQKRAENELRYLANFDPLTHLPNRSLMYQNIEKAIKYADKNNTQCALLFIDLD 1065

Query: 138  YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
             FK +ND+FGH VGDK++  ++ ++  +      +GR  G+EF         +    L +
Sbjct: 1066 KFKPVNDSFGHAVGDKLLCNITQRVSGMLSENAILGRQSGDEFLVLIQNI--KSLQSLRD 1123

Query: 198  DLRKII-ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
             +RKI  E +   I    SI+I+ S G+A           +I  AD A+  AK+ GRN  
Sbjct: 1124 TVRKISNELANKVIIEDFSINISASIGVALYPFDAVTTDILIRNADVAMMHAKQGGRNDF 1183

Query: 256  VCFSDIENN 264
              FSD  N 
Sbjct: 1184 KFFSDEMNE 1192


>gi|326794533|ref|YP_004312353.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326545297|gb|ADZ90517.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 454

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 10/170 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISS------LGSYNEKLSIVFFDIDYFKQINDNF 146
              +  ++  L   D L+G  N   +         L       S++  DID FK+IND F
Sbjct: 285 RMEAERQLMVLVTKDKLTGAYNRHKWDEQIKVSLDLAQRGTVFSLIMLDIDCFKKINDQF 344

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD V+ F +  L+        + R+GGEEFA        ++A  +A  + + IE +
Sbjct: 345 GHQVGDAVLQFFASSLLQCLRKSDLLFRMGGEEFAVLLPQQPLEKATQVAERILESIEMT 404

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
                       T+SAG++     +  ++I+ RAD+ALY +K +GRNRV 
Sbjct: 405 ----DDDRIPPFTVSAGVSTYRSGDDDNSILTRADKALYQSKLNGRNRVT 450


>gi|153826672|ref|ZP_01979339.1| GGDEF family protein [Vibrio cholerae MZO-2]
 gi|262191640|ref|ZP_06049818.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
 gi|149739534|gb|EDM53762.1| GGDEF family protein [Vibrio cholerae MZO-2]
 gi|262032482|gb|EEY51042.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
          Length = 443

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 18/230 (7%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102
           +F+A + ++ +       LE  +  N   V+ +      L  ++ S    L     +  +
Sbjct: 219 LFLAMLIMWAVAGAWLSALE--IRRNRREVLRARMRQEHLQRLNHS----LHEQNIKFVE 272

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++  D L+G +N       L             +S++F DIDYFKQ+ND +GH +GD ++
Sbjct: 273 MAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDLL 332

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +  +         + R GGEEF      ++ ++A  LA  LR  I +          
Sbjct: 333 REFALVISREIRESDKLVRWGGEEFVVFCAQTTLEQAIELAERLRAKIADHSWIHGGA-- 390

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             IT S GIA+    E I+  + RAD+ALY AK+ GRNR+     +   +
Sbjct: 391 --ITCSIGIAQM-GDERITETVSRADEALYRAKRLGRNRIEVHYGLMAKS 437


>gi|89092509|ref|ZP_01165462.1| probable signalling protein [Oceanospirillum sp. MED92]
 gi|89083021|gb|EAR62240.1| probable signalling protein [Oceanospirillum sp. MED92]
          Length = 381

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 20/217 (9%)

Query: 40  ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR 99
           A + FI  + L    +   + +   L+  L  ++ + T             +EL  + + 
Sbjct: 171 AAISFIVAMGLITFAVIVLHRVNSPLIFRLEALVKART-------------RELDEANSE 217

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +  LS+ D L+G+ N S F+  L          ++++  D+D FK IND +GHP GD V+
Sbjct: 218 LLYLSQHDSLTGIGNRSWFLQQLRHARVGEEGSIALLMIDLDGFKPINDRYGHPTGDTVL 277

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGP 214
           A +  +L +V      V R+GG+EFA      +   EA  +   +   I+   I +S+  
Sbjct: 278 AQIGQRLKLVVRACDGVARIGGDEFAVILRDLARLDEAVNITEGIIDAIKQ-PIEVSASC 336

Query: 215 SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKS 250
            + +  S GIA +   +E  + +I RAD A+Y AK+ 
Sbjct: 337 HVSVGCSIGIAFDHTSEESDAALITRADTAMYDAKRQ 373


>gi|323703086|ref|ZP_08114741.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531980|gb|EGB21864.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfotomaculum nigrificans DSM 574]
          Length = 619

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 87/187 (46%), Gaps = 11/187 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
              + E   +  +I  ++  D L+ L N     + L         Y ++L+++F D+  F
Sbjct: 168 NRDITERKNAEEKIYYMAYYDPLTNLPNRWLIKNQLAQELARARLYQQRLAVLFLDLHRF 227

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILAND 198
           K  ND  GH VGD+++  ++D+L        F+GR+G +EF       S  ++A  +A +
Sbjct: 228 KLTNDTLGHSVGDRLLQGVADRLRSCLRKGCFIGRMGDDEFIIVLPNISYIEDATGMAGE 287

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + + ++    NI  G  +H+    GIA    H +   +++  A+ A+Y AK  G +    
Sbjct: 288 IIQTLQ-LPFNI-DGHKLHVNARIGIAVYPDHGDNPESLLKNANNAMYYAKDHGGSGYQV 345

Query: 258 FSDIENN 264
            +   N+
Sbjct: 346 CTSHMND 352


>gi|257059320|ref|YP_003137208.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp.
           PCC 8802]
 gi|256589486|gb|ACV00373.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp.
           PCC 8802]
          Length = 624

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 96/215 (44%), Gaps = 20/215 (9%)

Query: 56  TPFYGLEYIL--VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113
           +P Y  ++ +  +++ SL I        +      + +EL ++   + QL+ +D L+ + 
Sbjct: 415 SPRYWEDWEIHCLKHFSLYIG-------IALEQEQLYRELRLANEELEQLAFVDSLTEVA 467

Query: 114 NHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV-IAFLSDQLVVV 165
           N   F          L    + LS++  D+D+FK  ND +GHP GDK            V
Sbjct: 468 NRRRFDEYLQQEWRRLTRAKQPLSLIVCDVDFFKFYNDTYGHPAGDKCLQQVAQVLQQSV 527

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGI 224
                 V R GGEEFA     +    A  +A ++R  +   ++   S   S ++T+S GI
Sbjct: 528 KRPADLVARHGGEEFAIVLPNTDISGAVHIAGEVRSRLRGLKLEHRSSLVSDYVTLSFGI 587

Query: 225 AE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           A      +  +  ++  AD ALY AK  GR+R+  
Sbjct: 588 ATTYPTPQTVVENLLIDADLALYQAKGQGRDRIFV 622


>gi|158312850|ref|YP_001505358.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EAN1pec]
 gi|158108255|gb|ABW10452.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EAN1pec]
          Length = 829

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 13/175 (7%)

Query: 94  FISYNRISQ---LSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQIND 144
           F+   ++++   L+R D L+GL N   FI  L +        +  +++  D+D FK+IND
Sbjct: 294 FVEVQQLAESKVLARTDDLTGLTNRRGFIERLSTLEGNIPDGDSFALLLLDLDRFKEIND 353

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH VGD ++  +  ++           RLGG+EFA     +    A  +A+ +  ++ 
Sbjct: 354 SLGHHVGDALLVEVGSRIAGALRPGDLHARLGGDEFAVLLEHADADTARRVADRV--LVA 411

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            S      G ++H+  S G A    H     T++ RAD A+Y AK SGR  V  +
Sbjct: 412 LSGAFEVGGMTLHVGASIGAALYPDHAADAQTLLQRADVAMYGAK-SGRTGVEYY 465


>gi|194365042|ref|YP_002027652.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
 gi|194347846|gb|ACF50969.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3]
          Length = 512

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 58/218 (26%), Positives = 90/218 (41%), Gaps = 10/218 (4%)

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCL 109
           LF  GL     +  ++     L  +     L     +     E      R++  +  D L
Sbjct: 275 LFEAGLNSPSRVRELIDHAQELATLRNLRELQDADQARRRADEFEARAKRLADQAHRDAL 334

Query: 110 SGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +G+LN     +         G     LS+ F D+D FK+IND  GH  GD+V+   + +L
Sbjct: 335 TGVLNRRQLEAVLEQEFLRAGRQGWPLSVAFIDLDDFKKINDAHGHLTGDEVLRAFAGKL 394

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                    V R GGEEF A    +SE  A  +   +   I  + +       + +T SA
Sbjct: 395 QGQLRNSDTVARFGGEEFVALLPNTSESVALDVIRRVLANIVATPMAEIESGPLFVTFSA 454

Query: 223 GIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVC 257
           G+A +   E    +  ++  AD  LY +K  GRNRV+ 
Sbjct: 455 GVATQGGYERFADVQDLLRAADDVLYRSKNLGRNRVIA 492


>gi|158314754|ref|YP_001507262.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EAN1pec]
 gi|158110159|gb|ABW12356.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EAN1pec]
          Length = 561

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 6/175 (3%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--EKLSIVFFDIDYFKQINDNFGHPV 150
            F +   I   S  D L+ L N S  +  L       +  +VF D+D FK +ND +GH  
Sbjct: 388 RFAAEQEIRYRSTHDTLTDLPNRSWLLERLARSLKLHRTGVVFIDLDGFKTVNDTYGHQA 447

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQIN 209
           GD+++  ++ +L         V RL G+EFA          A   LA  +   IE   + 
Sbjct: 448 GDRLLCEIARRLEAAVRPDDLVARLAGDEFAVLCERVDSPAAVERLARRVLAEIEE-PVV 506

Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           ++ G ++ ++ SAG+A  R        ++  +D A+Y AK++G  + +      +
Sbjct: 507 LAEG-TVRVSASAGVAISRADLSDPDRLLNASDIAMYAAKRAGAGQCIVHESWMH 560


>gi|293433320|ref|ZP_06661748.1| inner membrane protein ycdT [Escherichia coli B088]
 gi|291324139|gb|EFE63561.1| inner membrane protein ycdT [Escherichia coli B088]
          Length = 431

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 22/258 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LV 66
            + +WL        F+   + I+  +    F A +  I+ +F+    ++ +Y    I +V
Sbjct: 178 MIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVV 237

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             L++++I +            I   L ++ N    ++  D L+ + N + F + L    
Sbjct: 238 SKLTVMVIFMC----------HIFSALRVTKN----IAHRDPLTNIFNRNYFFNELTVQS 283

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +      ++  DID+FK++ND +GHPVGD+VI  + + +         + R+GGEEF 
Sbjct: 284 ASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFG 343

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYR 239
                   + A  LA  +R+ +E    +         +TIS G +  + +    + I   
Sbjct: 344 VLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRL 403

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK++GRN+VV 
Sbjct: 404 ADNALYEAKETGRNKVVV 421


>gi|158424140|ref|YP_001525432.1| hypothetical protein AZC_2516 [Azorhizobium caulinodans ORS 571]
 gi|158331029|dbj|BAF88514.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
          Length = 365

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 15/241 (6%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFI--ANIFLFYIGLTPFYGLEYILVENLSLVIISITIS 79
           F     +    I F I  AT +++   +    +   T    L  I+V+ +SL++      
Sbjct: 134 FPGRESIPAAVIGFLIPAATAVWVWFNSEPANWPDTTNALLLNAIIVQAISLLV------ 187

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDI 136
           L+L   S +  ++     + +   +  D L+G+ N      +L    + + + +++  D+
Sbjct: 188 LVLFSYSQAAYQQAKAQASMMESAALSDPLTGIANRRGIERALEIQGASSRQWALILLDM 247

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK +ND +GH  GD+V+  + D L  V      +GR GG+EF   +   S  EA  LA
Sbjct: 248 DYFKTVNDQWGHVFGDRVLQNVVDALRRVLREGDVIGRWGGDEFLVVSADLSAPEAEALA 307

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             LR+ +      +    S  +TISAG+A       ++  +   D ALY +K+ GRNRVV
Sbjct: 308 EKLRQAVA----VLPDDESGGVTISAGVALWDGDGGLAEALRLVDAALYRSKQMGRNRVV 363

Query: 257 C 257
            
Sbjct: 364 F 364


>gi|331016833|gb|EGH96889.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 818

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 16/190 (8%)

Query: 83  GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIV 132
           G +SG++L    ++  R     +S  +  D L+GL+N S F   L    +        ++
Sbjct: 348 GVVSGAVLVLHDMTQERQYIADLSWQAAHDPLTGLVNRSEFERRLQQVLDDSSTGSHCLM 407

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F D+D FK +ND  GH  GD+++  L   L         + RLGG+EF    +  +   A
Sbjct: 408 FLDLDQFKLVNDTGGHAAGDELLRQLCQALPQGLRDSDTLARLGGDEFGVLLVDCTTSTA 467

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI---IYRADQALYVAKK 249
             +A  LR+I++         P    T+S G+      +  +T+   +  AD A Y+AK+
Sbjct: 468 HDIAEALREIVQGLHFMWKDRP-FMTTVSIGLVHL--GDTPATLEGSLSAADMACYMAKE 524

Query: 250 SGRNRVVCFS 259
            GRNRV  +S
Sbjct: 525 KGRNRVQVYS 534


>gi|209808971|ref|YP_002264509.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238]
 gi|208010533|emb|CAQ80901.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238]
          Length = 487

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 11/205 (5%)

Query: 63  YILVENLSLVII--SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI- 119
           +  + +LSL+ I     + + L   +   +K       + S+L+  D L+G+ N  +F  
Sbjct: 277 WRTIVSLSLLSIVGCFFVIIALLMFNLHYVKRTKEQKEKYSELAYNDYLTGVNNRRSFDL 336

Query: 120 ------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                 ++     +  SI+  DID FK+ ND +GH VGD +I   ++  +        +G
Sbjct: 337 KGSQVLATYRRNRKPFSIIMCDIDNFKEYNDKYGHEVGDTMITSFAEACLANLRDSDILG 396

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-P 232
           R GG+EF       S ++A  +A  L+ +I    + I +   + +T S GI+     +  
Sbjct: 397 RFGGDEFVILLPEQSHEQAHFVAQKLQAVIRKIAVPIEN-IELSMTCSMGISTITDPKVT 455

Query: 233 ISTIIYRADQALYVAKKSGRNRVVC 257
           I  ++  AD  LY AKKSGR+ V C
Sbjct: 456 IPELLSIADDRLYDAKKSGRDCVKC 480


>gi|157373970|ref|YP_001472570.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157316344|gb|ABV35442.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 351

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 58/275 (21%), Positives = 112/275 (40%), Gaps = 27/275 (9%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIAT--VIFIANIFLFYIGLTPF----YGLE 62
             IW       E ++ H  +        + + T  +    +  + ++ + P     + + 
Sbjct: 75  FVIWQLFYTGGEMYAGHASLTGVEALVDVLVLTFAIALFPDRRVMFMAVLPLMLSSFFIR 134

Query: 63  YILVENLSLVIISITISLLLGYISGS----------ILKELFISY--NRISQLSRIDCLS 110
           +I +    L  ++    +L   ++G           I++++   Y   +  +++ +D L+
Sbjct: 135 FIEIPANPLFPVTKLFCILAILVTGQKVLYSWFKKAIVRDVEKQYLLKQFRRMALVDGLT 194

Query: 111 GLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            + N   F   L          N  LS++  DIDYFK++ND+ GH VGD+ +  ++  L 
Sbjct: 195 NISNRRHFDEILSQEIRASERNNHPLSLILIDIDYFKRLNDSSGHQVGDECLVEVAKVLA 254

Query: 164 V-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITIS 221
           V          R GGEEF      +       +A  +R  +   +++        +IT+S
Sbjct: 255 VICHRPRDLAARYGGEEFVLLLPDTGLSGGCQIAKKVRDKLAGIKLDHPDSELGHYITVS 314

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+ +          I +AD  LY AK +GR+R V
Sbjct: 315 QGVCQWREGMSADDFISKADTLLYRAKSTGRDRYV 349


>gi|313669563|ref|YP_004049988.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM
           16994]
 gi|313156760|gb|ADR35435.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM
           16994]
          Length = 294

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 20/191 (10%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E   S   I  L+  D L+ L N   FI  L              +++F D+D FK 
Sbjct: 100 DITEQKKSQMEIEHLAFHDFLTQLPNRRLFIDRLEYTLTIMTRSRSCAAVLFMDLDNFKP 159

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG--SSEQEAA----IL 195
           +ND +GH +GD ++   + +L         V R GG+EF        +S  EA      +
Sbjct: 160 LNDLYGHAIGDLILQETATRLQEGLRDSDVVSRFGGDEFVILLTNLSNSHDEARTYVLQV 219

Query: 196 ANDLR-KIIENSQINISSGPSIHIT-----ISAGIAERCHKE-PISTIIYRADQALYVAK 248
           A  +R KI E  + ++     +  T     +S GI+  C  +     II  AD+A+Y AK
Sbjct: 220 AEKIRLKINEVYKFDVQKNNHLEQTEHSCHVSIGISLFCDPKINPEYIIGEADKAMYEAK 279

Query: 249 KSGRNRVVCFS 259
           + G+NR+V + 
Sbjct: 280 EQGKNRIVMYD 290


>gi|309787860|ref|ZP_07682470.1| uncharacterized yegE domain protein [Shigella dysenteriae 1617]
 gi|308924259|gb|EFP69756.1| uncharacterized yegE domain protein [Shigella dysenteriae 1617]
          Length = 567

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 86/182 (47%), Gaps = 12/182 (6%)

Query: 89  ILKELFISYNRISQLSR---IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           +++++  S   + QLS     D L+ L N ++F   L        S +++ ++VF D+D 
Sbjct: 289 VIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQLRILLQTVNSTHQRHALVFIDLDR 348

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND+ GH  GD ++  L+  ++ +  +   + RLGG+EF       + + A  +A  
Sbjct: 349 FKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARFIATR 408

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           +   + +    I  G    +  SAGI          + ++ +AD A Y +K  GR RV  
Sbjct: 409 IISAVNDYHF-IWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGRVTI 467

Query: 258 FS 259
           + 
Sbjct: 468 YE 469


>gi|261404238|ref|YP_003240479.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Paenibacillus sp. Y412MC10]
 gi|261280701|gb|ACX62672.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Paenibacillus sp. Y412MC10]
          Length = 672

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 100/197 (50%), Gaps = 11/197 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS--SLGSYN 126
           L  V ++I   LL+ +  G++  +  +    + +L+  D ++GL N +         +  
Sbjct: 215 LYCVTVAIFAILLISW--GAMFFDRHV----LEKLAYQDTITGLPNRNEMNRFFRTNAET 268

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
           +K++I+F D+D FK IND  GH VGD ++  +  +L     +   V R+GG+EF      
Sbjct: 269 DKITILFLDLDQFKAINDTLGHNVGDLLVHEVGKRLRQFIRSGQQVFRIGGDEFLVILKQ 328

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALY 245
           S    A  LA+D+ + I+  ++    G  +++T+S GI+    H    +T++  AD A+Y
Sbjct: 329 SDPNYAQRLADDILQQIK--KVYHIDGNELYVTVSIGISIGSVHSSDRTTLLKNADTAMY 386

Query: 246 VAKKSGRNRVVCFSDIE 262
            AK  G+N+   + +  
Sbjct: 387 KAKGLGKNQQCLYDEEM 403


>gi|89072919|ref|ZP_01159476.1| hypothetical GGDEF family protein [Photobacterium sp. SKA34]
 gi|89051441|gb|EAR56896.1| hypothetical GGDEF family protein [Photobacterium sp. SKA34]
          Length = 413

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 71/282 (25%), Positives = 118/282 (41%), Gaps = 48/282 (17%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATV---------IFIANIFLFYIGL 55
           L  +   +L   +NL       F++  ++  S     +         +FI  +F F    
Sbjct: 149 LTSWWDTYLFTYRNLSLLPLVIFLLNLALVCSSASTLLKRNHSSDQAVFICLLFSFIT-- 206

Query: 56  TPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH 115
             F   +Y  + ++S  I+++   LL+  IS S             +L+ ID L+ +   
Sbjct: 207 --FTFFQYTFISSVSFSIVAVL--LLINIISCS------------HELAFIDQLTEIPGR 250

Query: 116 SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            A  + L       ++   D+D+FK+ ND +GH  GD V+  ++  L  + G      R 
Sbjct: 251 RALDNELKHLGRTYTLAMIDVDHFKKFNDKYGHDTGDDVLKLVATLLKGIDGGGN-AYRY 309

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS--------------------GPS 215
           GGEEF     G S  E      +LR+ IE  ++ I                        S
Sbjct: 310 GGEEFTILFKGKSIDECLPFLEELREKIEKYKMIIRDHDKRPTSNRAGSKARGQDKTSKS 369

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + +T+S G+AE   ++    ++  AD ALY AK++GRNRV C
Sbjct: 370 VKVTVSIGVAENYLEQEPEDVLKHADNALYQAKEAGRNRVQC 411


>gi|229520386|ref|ZP_04409811.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
 gi|229525795|ref|ZP_04415200.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|229339376|gb|EEO04393.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|229342484|gb|EEO07477.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
          Length = 443

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 18/230 (7%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102
           +F+A + ++ +       LE  +  N   V+ +      L  ++ S    L     +  +
Sbjct: 219 LFLAMLIMWAVAGAWLSALE--IRRNRREVLRARMRQEHLQRLNHS----LHEQNIKFVE 272

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++  D L+G +N       L             +S++F DIDYFKQ+ND +GH +GD ++
Sbjct: 273 MAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDLL 332

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +  +         + R GGEEF      ++ ++A  LA  LR  I +          
Sbjct: 333 REFALVISREIRESDKLVRWGGEEFVVFCAQTTLEQAIELAERLRAKIADHSWIHGGA-- 390

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             IT S GIA+    E I+  + RAD+ALY AK+ GRNR+     +   +
Sbjct: 391 --ITCSIGIAQM-GDERITETVSRADEALYRAKRLGRNRIEVHYGLMAKS 437


>gi|218291245|ref|ZP_03495229.1| diguanylate cyclase with PAS/PAC sensor [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218238847|gb|EED06058.1| diguanylate cyclase with PAS/PAC sensor [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 493

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 19/187 (10%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYF 139
              + +  +    + +L+  D L+ L N   F               EK+++   D D F
Sbjct: 243 AMDITDRKVHQVELQRLAFTDALTRLPNRQQFEHDLRAAVEQAERRGEKVAVFLLDFDGF 302

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-----EQEAAI 194
           K +ND FGH  GD  +  ++++L         V R+GG+EF     G +      + AA 
Sbjct: 303 KYVNDTFGHQFGDATLKAIAERLQKALCGRAKVYRMGGDEFTVIQAGIAGEADVRETAAR 362

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
                R+ +E        G S+ + IS G A    H   +  ++  AD ++Y AK+ G +
Sbjct: 363 CVEAFREPLEVM------GESVPLGISIGAAIYPDHSRDVDALLRYADISMYAAKEQGGH 416

Query: 254 RVVCFSD 260
           R+  +S+
Sbjct: 417 RLCLYSE 423


>gi|75907051|ref|YP_321347.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Anabaena
           variabilis ATCC 29413]
 gi|75700776|gb|ABA20452.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Anabaena
           variabilis ATCC 29413]
          Length = 734

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 11/186 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFF 134
           +      +  +L  +   + +L+  D L+ + N   F          L      LS++  
Sbjct: 544 IAIQQSELYLQLQQANLELQRLACSDGLTQVANRRCFDNTIALVWEHLAREQGSLSLILC 603

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
           D+D FK  ND  GH  GD V+  ++  +   V G    V R GGEEFA     +  + A 
Sbjct: 604 DVDCFKLYNDTLGHLAGDDVLRHVAGAISRSVKGPSDLVARYGGEEFAVILPNTDAEGAI 663

Query: 194 ILANDLRKIIENSQINISSGP-SIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKS 250
            +A +++  +   Q+   S   S  I++S G+A      +   + +I  ADQ LY AK  
Sbjct: 664 AVAKEIQSNVSILQLPHPSSQVSELISLSLGLATTIPDSQSSPAILIAAADQGLYQAKAQ 723

Query: 251 GRNRVV 256
           GRN +V
Sbjct: 724 GRNCLV 729


>gi|326794123|ref|YP_004311943.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
 gi|326544887|gb|ADZ90107.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
          Length = 801

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 11/179 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           L+E   +    ++ + +D L+ L N   F   L          N    + + D+D+FK++
Sbjct: 350 LRESLAARAEATKQANLDPLTNLANRRFFQKKLQHLCQMAKSNNTPFGLFYLDLDHFKEV 409

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRK 201
           ND  GH  GD V+    ++L     +   + R+GG+EF     G  ++ A   +AN++ K
Sbjct: 410 NDIHGHREGDNVLKDAGERLQRTLPSNCELARIGGDEFTILIPGIVDEAALGDIANNVLK 469

Query: 202 IIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             E S   I     + I+ S GI A     +  ST++  AD+A+Y AK SGR +   FS
Sbjct: 470 AFE-SPFRIGV-EQVSISASIGITACPKDAQDESTLLQFADEAMYAAKNSGRRQYHIFS 526


>gi|297530793|ref|YP_003672068.1| response regulator receiver modulated diguanylate cyclase
           [Geobacillus sp. C56-T3]
 gi|297254045|gb|ADI27491.1| response regulator receiver modulated diguanylate cyclase
           [Geobacillus sp. C56-T3]
          Length = 542

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 82/174 (47%), Gaps = 9/174 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           ++ L     +I  L  ID L+G+ N            S L  Y     +   D+D+FKQ+
Sbjct: 217 VRRLIEKKRKIDDLVLIDELTGVYNRKYLPRVYARLRSDLERYGAPSCLALLDLDHFKQV 276

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH  GD V+  L+  L         V RLGGEEF      +S+ EA  +   L++ 
Sbjct: 277 NDRFGHLAGDAVLQKLAAFLRQHTRGVDTVVRLGGEEFVVWLAKTSKSEARAVLERLQRQ 336

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255
               ++  + G  +  T SAG+ E    + P+   +  AD+ALY AK+ G NR+
Sbjct: 337 FAAEKVE-ADGALLSCTFSAGLVECDEPDRPLDYWLRLADKALYAAKRGGGNRI 389


>gi|120613183|ref|YP_972861.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
 gi|120591647|gb|ABM35087.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
          Length = 496

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 10/188 (5%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSI 131
           +L  G    ++L E   +     +L+  D ++GL N +  +                L+I
Sbjct: 295 ALEAGARLSALLLERERAQQSFRRLAYQDAVTGLPNRAFLLEATERLIREARREGHSLAI 354

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
            F D+D FKQ+ND  GH  GD ++  ++ +L         V R+GG+EFAA       +E
Sbjct: 355 AFIDLDRFKQVNDQLGHRAGDDLLREVAQRLQGASRRADIVARIGGDEFAAVLPRCGSRE 414

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
           AA  A     +    +  +  G    +  S GIA+        +T+++ AD A+Y AK++
Sbjct: 415 AAAAARR--LLEAAVRPVMLHGRCWSLGASIGIAQYPRDGTNAATLLHHADLAMYAAKRA 472

Query: 251 GRNRVVCF 258
           G  R+  F
Sbjct: 473 GGQRLSVF 480


>gi|83648383|ref|YP_436818.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83636426|gb|ABC32393.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 553

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 8/169 (4%)

Query: 98  NRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150
             +  +   D L+GLLNH +                  L+ V  D+D+FK++ND +GH +
Sbjct: 381 RELRGMLSRDGLTGLLNHISAEEYLSQQLSRARRMGSSLAYVMVDLDHFKRVNDQYGHLM 440

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GD+V+   +  L         +GR GGEEF      ++++ A  +   +R        N 
Sbjct: 441 GDRVLVNFARYLQGRLRRSDVIGRYGGEEFVVILPDTTKEHARFVIESMRMSFATINHNT 500

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
              P + +T SAGIA     + ++ +   AD ALY AK+ GRN+V  ++
Sbjct: 501 EEDP-LQVTFSAGIAAFPDIDDMTMLSKAADDALYDAKQQGRNKVCIYN 548


>gi|77456420|ref|YP_345925.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas fluorescens Pf0-1]
 gi|77380423|gb|ABA71936.1| putative sensory box GGDEF/EAL domains protein [Pseudomonas
           fluorescens Pf0-1]
          Length = 643

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 9/182 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           S +  +  S + +  L+  D L+ L N   F             +    +++  D+D+FK
Sbjct: 200 SDISAIKDSEHELKHLAHHDPLTDLPNRLLFSDRAEQALASAQTHKRGCALLMIDLDHFK 259

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND+ GH +GD+++  ++ +L  +FG  + + RLGG+EFA       +   A      R
Sbjct: 260 LINDSLGHTIGDRLLKAVAARLQALFGPGITLARLGGDEFAVLLESCPQPAQAAALAQ-R 318

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
            +    +     G  + I  S GI+           ++  AD AL+ AK SGRN    ++
Sbjct: 319 ILDALKEPFCLDGHELFINASLGISLFPSDALSAEQLLRNADAALFKAKSSGRNGYALYT 378

Query: 260 DI 261
           + 
Sbjct: 379 EE 380


>gi|309779069|ref|ZP_07673836.1| sensory box/GGDEF family protein [Ralstonia sp. 5_7_47FAA]
 gi|308922134|gb|EFP67764.1| sensory box/GGDEF family protein [Ralstonia sp. 5_7_47FAA]
          Length = 957

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 22/187 (11%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQ 141
            + E  ++  R++Q + ID L+GL N +                  +  +   +ID FK 
Sbjct: 516 DVTEQEMTRTRLAQHATIDPLTGLPNRTLLADRVQQSVEMAARQRSRFYVALVNIDRFKV 575

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA----AILAN 197
           +ND+ GH +GD+V+  ++++L     T   V R GG+ FA     +  +       + A 
Sbjct: 576 VNDSLGHLLGDEVLRRVAERLRDAADTVDTVARFGGDVFALVISHAGSRGVDFGFDLFAE 635

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +R            G  + +T S G+AE   H     ++I  A+ A+Y AK++GRNR+ 
Sbjct: 636 PVR----------VEGHEVFVTASIGVAEYPAHGADADSLIRHAEMAMYYAKQNGRNRLE 685

Query: 257 CFSDIEN 263
            F+   +
Sbjct: 686 FFAPEMD 692


>gi|193222246|emb|CAL60852.2| conserved hypothetical protein; putative EAL and GGDEF domains
           [Herminiimonas arsenicoxydans]
          Length = 783

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 82/180 (45%), Gaps = 10/180 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
           ++ +L    +R    +  D L+G+ N   F               +  ++ F D+D FK 
Sbjct: 337 LISQLEQEKSRALLQASHDYLTGVPNRRLFYEMAATELARAKRSRKLYALFFLDLDKFKL 396

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           IND  GH VGD ++  ++ +L         + RLGG+EF       +SE + A +A  L 
Sbjct: 397 INDTLGHAVGDLLLQGVARRLRESLREYDLLARLGGDEFVILVSEMASESDIARVAAKLV 456

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++ +  +++  G  I ++ S GIA      + + T++  AD A+Y AK +G      F 
Sbjct: 457 DVVRDPFLDL-GGNDIDVSPSIGIALYPRDGQDVETLLMHADLAMYSAKSAGAATYRFFD 515


>gi|160876519|ref|YP_001555835.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|217972319|ref|YP_002357070.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Shewanella baltica OS223]
 gi|160862041|gb|ABX50575.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|217497454|gb|ACK45647.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Shewanella baltica OS223]
 gi|315268713|gb|ADT95566.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Shewanella baltica OS678]
          Length = 684

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
             IL +   + +++ +++  D L+GL N +  + ++         +    +++F D+D F
Sbjct: 232 NQILIQFSQTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRSRVHKRSFALMFIDLDRF 291

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND+ GH +GD+ +A ++  L    G    V RLGG+EF   A    +  +AA   + 
Sbjct: 292 KNINDSLGHALGDQFLARIARILERFVGDKGTVSRLGGDEFVILADTVHTPDQAADFVDK 351

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L  +I+ +     +  +IH   S GI+           +I  AD A+Y AK +G N+   
Sbjct: 352 L--LIQLNVPIQLNEHAIHPAASIGISIYPEDGNSAEDLIRHADIAMYSAKAAGSNQWAF 409

Query: 258 FSDIENNTC 266
           F        
Sbjct: 410 FKQQMTERA 418


>gi|153001785|ref|YP_001367466.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|151366403|gb|ABS09403.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS185]
          Length = 684

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
             IL +   + +++ +++  D L+GL N +  + ++         +    +++F D+D F
Sbjct: 232 NQILIQFSQTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRSRVHKRSFALMFIDLDRF 291

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND+ GH +GD+ +A ++  L    G    V RLGG+EF   A    +  +AA   + 
Sbjct: 292 KNINDSLGHALGDQFLARIARILERFVGDKGTVSRLGGDEFVILADTVHTPDQAADFVDK 351

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L  +I+ +     +  +IH   S GI+           +I  AD A+Y AK +G N+   
Sbjct: 352 L--LIQLNVPIQLNEHAIHPAASIGISIYPEDGNSAEDLIRHADIAMYSAKAAGSNQWAF 409

Query: 258 FSDIENNTC 266
           F        
Sbjct: 410 FKQQMTERA 418


>gi|153002516|ref|YP_001368197.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|151367134|gb|ABS10134.1| diguanylate cyclase [Shewanella baltica OS185]
          Length = 605

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 9/178 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDN 145
           + + L  +  ++ +++  D L+GL N   F   L           ++  D+DYFK  ND 
Sbjct: 425 LQQALVSANTQLKEMAETDELTGLANRRPFTERLEAVLQTKTPAGLLMLDVDYFKSYNDT 484

Query: 146 FGHPVGDKVIAFLSDQLVVVF--GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           +GH  GD V+  ++D LV          + R+GGEEFA      S  +   +A  L  ++
Sbjct: 485 YGHIEGDLVLKRVADALVQCDILPHNALLARIGGEEFALVVEHVSPAQLTAIATQLCYLV 544

Query: 204 ENSQINISSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           E   I   + P   +TIS G             +  ++ RAD  LY AK  GRNRV  
Sbjct: 545 EQLSIPHQASPLAVVTISIGCVFLPLDKVSGLKMPDVLRRADVCLYRAKDKGRNRVEV 602


>gi|119945812|ref|YP_943492.1| diguanylate cyclase [Psychromonas ingrahamii 37]
 gi|119864416|gb|ABM03893.1| diguanylate cyclase [Psychromonas ingrahamii 37]
          Length = 330

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 58/197 (29%), Positives = 88/197 (44%), Gaps = 18/197 (9%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSY 125
           II  T +++  Y      + +   +    +LS  D L+GL N   F+  L          
Sbjct: 135 IIEDTTAIVRQY------RRIKKQHKMFKELSETDPLTGLGNKRFFMKLLGFSFDKAQRE 188

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAA 184
             +L+++  DIDYFK  ND +GH  GD+ +  +++ +          V R GGEEF    
Sbjct: 189 QTELAVLMIDIDYFKLYNDYYGHLKGDQCLKQVANAIKNSLSRKTDIVARFGGEEFIIFF 248

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIA---ERCHKEPISTIIYRA 240
            G+S Q+   LA  ++  +E  QI     P S ++T+S G              T I  A
Sbjct: 249 TGASAQQTLQLAELIKNNVELCQITHPKSPVSDYVTVSIGAYIKIPSIENYAAETFIKYA 308

Query: 241 DQALYVAKKSGRNRVVC 257
           D+ LY AK  GRN+ V 
Sbjct: 309 DKNLYKAKSLGRNKTVI 325


>gi|59713564|ref|YP_206339.1| GGDEF domain-containing protein [Vibrio fischeri ES114]
 gi|59481812|gb|AAW87451.1| GGDEF domain protein [Vibrio fischeri ES114]
          Length = 384

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 70/275 (25%), Positives = 115/275 (41%), Gaps = 37/275 (13%)

Query: 6   KDFLSIWLCHEKNLESFSPH-TFMIYFSIFF----SIFIATVIFIANIFLFYIGLTPFYG 60
            D   IW  +  N+   SP    ++ +SI      +IF+ T     ++  +   L     
Sbjct: 120 NDMTEIWQTYLLNIPEISPLPVIVVLYSIVMCGLSAIFVLTRSNNTDLASYTCLLYSSLT 179

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
                V+ +S  + SI   LLL YI  +             +L+ ID L+G+    A  S
Sbjct: 180 FSLFSVDYISSTMFSIAGLLLLLYIISAS-----------HELAFIDQLTGIPGRRALES 228

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
            +       +I   D+D+FK+ ND +GH  GD V+  ++  +    G    V R GGEEF
Sbjct: 229 EMKHLGRTYTIAMLDVDHFKKFNDTYGHDTGDDVLKLVASIMAQT-GGNAKVYRYGGEEF 287

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPS--------------------IHITI 220
                G + +++     +LR+ I +  + I    +                    +++TI
Sbjct: 288 TVLFKGKTAKQSLEYLEELREDIADYDLIIRDTSTRPKDNKEGQAKRGKANKTKVVNVTI 347

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S G+A+         +I  AD+ALY AK+ GRN V
Sbjct: 348 SIGVADSEDLRKPQLVIKAADEALYRAKEGGRNCV 382


>gi|300310347|ref|YP_003774439.1| GGDEF domain transmembrane protein [Herbaspirillum seropedicae
           SmR1]
 gi|300073132|gb|ADJ62531.1| GGDEF domain transmembrane protein [Herbaspirillum seropedicae
           SmR1]
          Length = 334

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 105/227 (46%), Gaps = 23/227 (10%)

Query: 56  TPFYGLEYILVENLSLVIISITISLLLGY----------ISGSILKELFIS--YNRISQL 103
            PF+  EY            + I+ +LG           I+G  L E  +     +++ L
Sbjct: 103 APFFQYEYPCHSPNEQRWFMMRIAPVLGAEDFFVISHVVITGRKLAEQRVERLNEKLALL 162

Query: 104 SRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  D L+GL N                 Y + LS++  DID+FK++NDNFGH  GD V+ 
Sbjct: 163 AVTDKLTGLANRMKLDEVLDNEINRADRYGKNLSLILLDIDHFKEVNDNFGHSTGDAVLV 222

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +++ L     +    GR GGEEF         ++AA +A  LR +IEN    +  G   
Sbjct: 223 RIAEILRANVRSSDLAGRWGGEEFLLILPECDMEDAARMAEKLRLLIENYNF-VPVGRR- 280

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             T S G+A        +T++  AD ALY AK +GRNRV   +++E+
Sbjct: 281 --TCSFGVAAYQAGHDRTTLLTLADLALYRAKNTGRNRVEIAANLES 325


>gi|83594462|ref|YP_428214.1| diguanylate cyclase with GAF sensor [Rhodospirillum rubrum ATCC
           11170]
 gi|83577376|gb|ABC23927.1| diguanylate cyclase with GAF sensor [Rhodospirillum rubrum ATCC
           11170]
          Length = 493

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 65/215 (30%), Positives = 103/215 (47%), Gaps = 18/215 (8%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           ++ L   + E   L    + ++ ++  ++    +EL      +++ +  D L+GL N  +
Sbjct: 271 WWELIIDVTETRPLDGFPLRMTGIVLEVNDRKTQEL-----ELARTAATDPLTGLANRRS 325

Query: 118 FISSLGS--YNEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
           F +       N+  S  ++  DID FK IND FGH  GD+V+  L+     V      +G
Sbjct: 326 FEALATRLLENKPGSGTLLVIDIDLFKHINDCFGHAAGDEVLRHLAIVGRSVLRDGDLIG 385

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI----SSGPSIHITISAGIAERCH 229
           RLGGEEFA         EA  +A+ L + +    +       S   + ITIS GIA  C 
Sbjct: 386 RLGGEEFAVLL-QMDGPEAYAVADRLCQAVREMAVTAPSWEHSSVVVKITISIGIAHPCP 444

Query: 230 KEP----ISTIIYRADQALYVAKKSGRNRVVCFSD 260
            E     +S  + RAD+ALY AKK GRN++   ++
Sbjct: 445 FEDPKFALSEALRRADRALYGAKKRGRNQICHDTE 479


>gi|77359917|ref|YP_339492.1| hypothetical protein PSHAa0971 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874828|emb|CAI86049.1| conserved protein of unknown function; putative membrane protein
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 751

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 85/187 (45%), Gaps = 8/187 (4%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQ 141
           +  S L E   + +++  LS  D  + L N + F   +  LG  N   +++ FD+D FK+
Sbjct: 294 VVYSDLTERKKAESQLHNLSNRDRTTNLPNRNLFFTDLQKLGQLNSHHALLVFDLDNFKK 353

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLR 200
           IND+ GH +GD ++A L+ +L  +        RLGG+EFA     +++       A    
Sbjct: 354 INDSLGHQLGDSLLAKLAMRLNKLTRENDVFYRLGGDEFALVMSDTNDIYTITRTAKQFL 413

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             I        +G  + IT S GI            ++  AD A+Y AKK G N  + F+
Sbjct: 414 AAIAT--PFKMAGHELAITSSVGIVLFPEDGNTPELLLKNADTAMYHAKKKG-NSYLFFN 470

Query: 260 DIENNTC 266
           D  N   
Sbjct: 471 DTMNREA 477


>gi|15966552|ref|NP_386905.1| hypothetical protein SMc04015 [Sinorhizobium meliloti 1021]
 gi|15075823|emb|CAC47378.1| Diguanylate cyclase [Sinorhizobium meliloti 1021]
          Length = 307

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 59/217 (27%), Positives = 97/217 (44%), Gaps = 16/217 (7%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ-------LSRI 106
           G  PF  +E  L +   L +                + ++     ++ Q        S++
Sbjct: 74  GKVPFRTVETDLHDGRWLWMTETVDQKGWMLCIAVDITDVRAGERKLRQDRDFALRASQV 133

Query: 107 DCLSGLLNHSAFISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+ + N    +  L  +    +        +   DIDYFK IND +GH  GD+V+   
Sbjct: 134 DELTSVPNRRYTMERLNEFIRNCAENPHMWGCVAIIDIDYFKAINDRYGHHRGDEVLLDF 193

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           + Q+          GR+GGEEF      ++  EA ++ + L   I N++  +S+ P    
Sbjct: 194 ARQMQEFVRRSDCFGRIGGEEFMLILPDTTVGEANLILDRLLDKIRNAR-PLSNIPEFFY 252

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T S G+AE    + +  I  RAD+ALY+AK+ GR+RV
Sbjct: 253 TCSVGLAEYREGDSVGDIYSRADEALYIAKREGRDRV 289


>gi|87120950|ref|ZP_01076842.1| PAS:GGDEF protein [Marinomonas sp. MED121]
 gi|86163788|gb|EAQ65061.1| PAS:GGDEF protein [Marinomonas sp. MED121]
          Length = 386

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 83/239 (34%), Positives = 131/239 (54%), Gaps = 15/239 (6%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
           F     +   T+I I+  F  Y+ +     +E IL   L  ++++ TI+++L  + G + 
Sbjct: 151 FGHIICVVAHTIILISEAFRLYLLID---KIEPILA--LGFLVVAHTIAIILNSV-GIMT 204

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
              F  Y  I  LS+ D L+GLLN   F S   + + +   ++++  DIDYFK INDN G
Sbjct: 205 AFSFAHYKAIRNLSKQDSLTGLLNRRGFFSLYQNKSTRYKEVAVISCDIDYFKTINDNHG 264

Query: 148 HPVGDKVIAFLSDQLVV----VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           H  GD+V+  ++ QL       F     V R GGEEF  A   SS  +A ++AN LR+ I
Sbjct: 265 HIYGDQVLEKIALQLKQHTKAHFSKESLVARWGGEEFVIALFDSSINQANLIANALRESI 324

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            ++Q  I +G + ++++S G+A +      I  II ++DQALY AK +GRN+V C S++
Sbjct: 325 YHNQYQI-NGQNFNLSLSFGVAHQAIEDVEIEDIINQSDQALYHAKSNGRNQVSCHSEL 382


>gi|307720873|ref|YP_003892013.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978966|gb|ADN09001.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
          Length = 776

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 83/184 (45%), Gaps = 10/184 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           +EL +  N ++ ++  D L+GL N    +  +           E+ S+ F D+D FK++N
Sbjct: 335 EELELQTNVLTFIAYHDHLTGLANKVLLLDRIEEAIKHAKTTEEQFSVFFLDLDKFKEVN 394

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH +GD+++  +  +L     +   + RLGG+EFA     +++     L +++  +I
Sbjct: 395 DTYGHEIGDELLLQIKSRLKQCIKSDDTLARLGGDEFAILHKNATKISTINLIDNI--LI 452

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
              +        I  + S G+A         + ++  A+ A+Y AK  G+N    +    
Sbjct: 453 RMKKPFHVKNIEIFTSFSIGVALYPQDSAKANQLLRNAETAMYKAKDDGKNTYQFYDKKM 512

Query: 263 NNTC 266
               
Sbjct: 513 TEMA 516


>gi|118581773|ref|YP_903023.1| diguanylate cyclase [Pelobacter propionicus DSM 2379]
 gi|118504483|gb|ABL00966.1| diguanylate cyclase [Pelobacter propionicus DSM 2379]
          Length = 505

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 11/174 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           ++EL  +     +L+  D L+G+ N   F  +L         YN + S+V FD+D FK +
Sbjct: 323 VRELHDTNVMHRELAFRDGLTGVYNRRFFQEALDKELMRAQRYNRQFSLVIFDLDNFKTV 382

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH VGD ++  +S  +  +  T     R GG+EF      +    A  +A +LR  
Sbjct: 383 NDTHGHTVGDLLLINVSKTVQDILRTTDIFARYGGDEFVIVMPETDLSSAIAVAENLRAR 442

Query: 203 IENSQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRN 253
           I+    ++ +   I  TIS G+              II  AD+ALY+AK SG+N
Sbjct: 443 IQGLTTSVGN-VFIRTTISIGLTSYIATLGNRSREQIIDIADKALYIAKHSGKN 495


>gi|120611697|ref|YP_971375.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
 gi|120590161|gb|ABM33601.1| diguanylate cyclase [Acidovorax citrulli AAC00-1]
          Length = 347

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 79/192 (41%), Gaps = 29/192 (15%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------------------------KL 129
           + +Y  +   S  D L+GL N   F                                 + 
Sbjct: 143 YQNYQSLLDYSERDALTGLFNRKTFDEQFARRGGVSSNAARQAPTEPADASEPRGEAPQH 202

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            +   DID+FKQ+ND FGH  GD+V+  +++ L   F     + R GGEEF      ++ 
Sbjct: 203 WLAVVDIDHFKQVNDRFGHLYGDEVLILVANILRNSFRGHDRIFRFGGEEFVVLLRSTTL 262

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
             A    N  R  ++             +T+S G A      P+  I+ +ADQALY AK+
Sbjct: 263 ATAHKAFNRFRIAVQEYDFP----QVGRVTVSLGFASTERGAPVE-ILGQADQALYYAKE 317

Query: 250 SGRNRVVCFSDI 261
            GRNRV  + D+
Sbjct: 318 HGRNRVCYYDDL 329


>gi|70730957|ref|YP_260698.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5]
 gi|68345256|gb|AAY92862.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5]
          Length = 366

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 108/225 (48%), Gaps = 18/225 (8%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVII--SITISLLLGYISGSILKELFISY---N 98
           F++ IF+ ++ L PF+     L E   L+++  ++ +S L  Y   ++ +    +Y    
Sbjct: 139 FVSAIFITWLVLNPFWRTSTTLQELKGLLVLVYALFLSALTLYSFITLRRARLHNYIMSK 198

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQINDNFGHPVGD 152
            +   + +D L+ + N  +F++  G   + L       +   DID FK++ND +GH +GD
Sbjct: 199 LLLDQAYLDTLTEIPNRRSFMARAGQRLQALPREHDHYLAMVDIDNFKKVNDVYGHDIGD 258

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +V+  ++  +  V     +  RLGGEEFA         +   LA  L +++ +       
Sbjct: 259 EVLKRIAADIKGVMRDFDY-ARLGGEEFAIYLADVPRADVEALATRLCQVVRDQPTRHP- 316

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                +TIS G+A     E ++  + +ADQALY +K  G++R   
Sbjct: 317 -----VTISMGLARVEPGETLNQALIKADQALYESKHGGKDRYTF 356


>gi|255524596|ref|ZP_05391550.1| diguanylate cyclase [Clostridium carboxidivorans P7]
 gi|296185753|ref|ZP_06854160.1| diguanylate cyclase (GGDEF) domain protein [Clostridium
           carboxidivorans P7]
 gi|255511749|gb|EET88035.1| diguanylate cyclase [Clostridium carboxidivorans P7]
 gi|296049581|gb|EFG89008.1| diguanylate cyclase (GGDEF) domain protein [Clostridium
           carboxidivorans P7]
          Length = 393

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 76/264 (28%), Positives = 116/264 (43%), Gaps = 18/264 (6%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIG-LTPFYGLEYILVENLSL 71
           L    N+ S      +I+ ++    F   ++  +  FL YIG L  F      L+ N   
Sbjct: 128 LAVHGNITSVFIANLIIFSAVILMRFPLNLVVYSIPFLVYIGGLVIFQHNVNSLISNGVN 187

Query: 72  VIISITISLLLGYISGSILKE-------LFISYNRISQLSRIDCLSGLLNHSAF------ 118
            +I     +L+  +  +   E       L  +  ++  LS  D L+GLLN   F      
Sbjct: 188 GLIYFLAVILISTVIYNNYYEKIAKNIILEETIFKLDYLSNHDILTGLLNRRCFSAQASE 247

Query: 119 -ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
            +  L    +  +++  DIDYFK +ND  GHP+GD V+   S   +        + R GG
Sbjct: 248 KMKILTETKKAAALILVDIDYFKDVNDKLGHPIGDIVLKETSRIFMEHIKPNDLITRWGG 307

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPIST 235
           EEF      +S  EA ++A  +R  I+++ I ++    I IT S GI+       E    
Sbjct: 308 EEFLVFLFDTSIDEAYVIAEKIRVAIQDNVI-VTDKIQIKITASFGISLLKDNFSESFDA 366

Query: 236 IIYRADQALYVAKKSGRNRVVCFS 259
               AD ALY AK+ GRN+VV  S
Sbjct: 367 SYKSADVALYQAKEQGRNKVVIAS 390


>gi|116696148|ref|YP_841724.1| hypothetical protein H16_B2212 [Ralstonia eutropha H16]
 gi|113530647|emb|CAJ96994.1| conserved hypothetical protein [Ralstonia eutropha H16]
          Length = 417

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 112/245 (45%), Gaps = 30/245 (12%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84
            T +  FS   ++ +A     A + LF+ G               S  +++  ++ LLG 
Sbjct: 163 ATQLAGFSHAMNLPVAGGAGAAPLTLFFAGPVG------------SAWLLAPLMATLLGL 210

Query: 85  ISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDI 136
              +++  E  +++N     +R+D L+GLLN  A         +      + LS +  DI
Sbjct: 211 FGFTVMAMEQIVAHNESG--ARVDALTGLLNRGALEMSALSLVARWQRDGQALSCLVIDI 268

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFKQ+ND FGH  GD V+  ++  L          GR GGEEF      + EQ+A+ LA
Sbjct: 269 DYFKQVNDTFGHHAGDAVLREVAHALDNSRRASDVAGRYGGEEFCILCPHTDEQQASALA 328

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-----IIYRADQALYVAKKSG 251
           N + + +   ++    G +   ++S G+A+              +   AD+ALY AK+ G
Sbjct: 329 NRILRKVRAIELPAGRGHA---SVSIGVAQLRGGPGSKEALWRLLFADADRALYHAKEHG 385

Query: 252 RNRVV 256
           R+R V
Sbjct: 386 RDRYV 390


>gi|15806005|ref|NP_294705.1| GGDEF family protein [Deinococcus radiodurans R1]
 gi|6458709|gb|AAF10558.1|AE001950_10 GGDEF family protein [Deinococcus radiodurans R1]
          Length = 344

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 93/186 (50%), Gaps = 5/186 (2%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS 130
           L +I + I  L+G + G     L     R +  ++ D L+GL N  AF  ++    +  +
Sbjct: 157 LAVIMLLIC-LVGALFGQQAIRLQRQARRSAHDAQRDPLTGLFNRRAFDQAVRQTVQGGT 215

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +   D+D+FK IND+ GH  GD+V+  ++D L+          R GGEEFA    G    
Sbjct: 216 LALLDLDHFKAINDHHGHMAGDRVLRGVADVLLDHLPAGGSAYRWGGEEFALLLPGLFPP 275

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           EA  L + +R+ ++       +    H+T+SAG+ +    E +  I    D AL  AK++
Sbjct: 276 EAEDLLDSVRQEVQVRSFAGGA----HVTLSAGLGQYTVPEQLPGIFSEVDAALLAAKRA 331

Query: 251 GRNRVV 256
           GRNRV+
Sbjct: 332 GRNRVM 337


>gi|84623863|ref|YP_451235.1| hypothetical protein XOO_2206 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84367803|dbj|BAE68961.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 371

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 11/193 (5%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SY 125
           + S+T++          L  L +    + Q S  D L+GL N      +L          
Sbjct: 172 LASLTVAEAAAEQLSLALHNLRL-RETLRQQSIRDLLTGLYNRRYLEETLNHELARCTRR 230

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
              LS++  D+D+FKQ ND  GH  GD+V++ + + L+          R GGEE      
Sbjct: 231 GLPLSVLMLDVDHFKQFNDLNGHSGGDRVLSAIGELLLSQTRGEDICCRYGGEELTIILP 290

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERC-HKEPISTIIYRADQA 243
                 A ++A  LR  IE  Q+ + +G S+  +T S G A    H   ++ ++ RA +A
Sbjct: 291 EVDLPTACMMAEKLRTGIEALQV-MGNGVSLPKVTASFGAANFPDHAGTVAQLLRRAHEA 349

Query: 244 LYVAKKSGRNRVV 256
           LY AK+ GRN+VV
Sbjct: 350 LYRAKQVGRNQVV 362


>gi|78048216|ref|YP_364391.1| two-component system response regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036646|emb|CAJ24337.1| two-component system response regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 432

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 9/168 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+GL N   F+             ++ ++    DID+FK IND +GH  GD
Sbjct: 266 LQDLATRDFLTGLPNRRYFLEQSQRVIPKLLLQDQTVTAAMVDIDHFKHINDTWGHEAGD 325

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  ++  +         V R GGEEF     G     A      LR+ I   ++ +  
Sbjct: 326 QALRAVAASVSGHARPQDLVARFGGEEFCLLVPGLDAANATSYFETLRERISALRVRVGD 385

Query: 213 GPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++ +T+S G+       + +  ++  AD+ LY+AK  GRN+V   S
Sbjct: 386 -ETLSMTVSIGVCIASESDQSLHYLLNEADKHLYLAKAGGRNQVRLAS 432


>gi|88704937|ref|ZP_01102649.1| PAS/PAC sensory box/GGDEF family protein [Congregibacter litoralis
           KT71]
 gi|88700632|gb|EAQ97739.1| PAS/PAC sensory box/GGDEF family protein [Congregibacter litoralis
           KT71]
          Length = 438

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 61/191 (31%), Positives = 93/191 (48%), Gaps = 16/191 (8%)

Query: 81  LLGYISGSILKELFIS--YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           L+  IS     E+      + +++LS  D L+G+ N   F ++L         +  +L++
Sbjct: 243 LIQDISAEKQAEIAAEQLNDSLAKLSMTDGLTGIGNRRRFDTALENEWRRASRHGTELAL 302

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQ 190
           V  DID FK  ND+FGH  GD  +  ++  +          V R GGEE A    G S +
Sbjct: 303 VLADIDDFKAFNDDFGHLAGDDCLKNIAAAIEAFGNRVGDCVARYGGEELAIILPGLSLE 362

Query: 191 EAAILANDLRKIIENSQI---NISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALY 245
           +AA +A   R+ +E   I       G S+ +TIS G+A      K+   T+I  AD+ LY
Sbjct: 363 DAASVAEQCRQAVEALGIARKACGDGASV-VTISLGVAAMHPDSKDAAETLIEAADKQLY 421

Query: 246 VAKKSGRNRVV 256
            AK SG+N+V 
Sbjct: 422 RAKSSGKNKVQ 432


>gi|304412089|ref|ZP_07393699.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica OS183]
 gi|307305984|ref|ZP_07585730.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica BA175]
 gi|304349639|gb|EFM14047.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica OS183]
 gi|306911477|gb|EFN41903.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica BA175]
          Length = 310

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 10/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDN 145
           L    + +  ++ +D L+G+ N   F   L    +        LS+V  D+D+FK+ ND 
Sbjct: 133 LKRQSDLLHSIALLDSLTGVANRRQFEQRLPEIWKHCCRNELALSVVMLDVDFFKRFNDR 192

Query: 146 FGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD+ +  ++  +         FV R GGEEF      +    A   A  +   ++
Sbjct: 193 YGHQEGDQCLRQVAKAISDSLQRATDFVARYGGEEFICILPETKLAGAIHTAQKIVNAVQ 252

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVV 256
              +         +TISAG+A    K  +   T+I  ADQ LY+AK+SGRN+VV
Sbjct: 253 ALHLEHLESSFQEVTISAGVASVLPKSDLTWQTLIETADQQLYLAKESGRNQVV 306


>gi|312197314|ref|YP_004017375.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Frankia sp. EuI1c]
 gi|311228650|gb|ADP81505.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Frankia sp. EuI1c]
          Length = 805

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 82/197 (41%), Gaps = 14/197 (7%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLS 130
           I  ++  +  ++L+    +  R   L   D L+GL N  A +  L            +  
Sbjct: 343 IRSVVAILGSAVLRIRMENAARFRSL--HDPLTGLPNRVAILDHLRRSLAQGRPDTRRTG 400

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SE 189
           +++ D+D FK +ND  GH  GD+++  ++ +L  +      VGRL G+EFA    G    
Sbjct: 401 VLYIDLDGFKAVNDTLGHHAGDELLQAVAGRLRQLGRPTDLVGRLAGDEFAVLCEGVGGL 460

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAK 248
           ++   +   +   I      +     + +  S GIA           ++  AD A+Y AK
Sbjct: 461 EDLRAIGERV---IHALTPPVRLRRLVSVGASIGIALAGPDLTDAEQVLDAADLAMYAAK 517

Query: 249 KSGRNRVVCFSDIENNT 265
           + G  R V + D    T
Sbjct: 518 RRGPGRCVAYDDTIRET 534


>gi|114570741|ref|YP_757421.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Maricaulis maris MCS10]
 gi|114341203|gb|ABI66483.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Maricaulis maris MCS10]
          Length = 809

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 11/184 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
            +   +     +  RI+ L+  D L+GL N   F  +L +        + +++++FFD+D
Sbjct: 347 FTFRDVSSEERARARITHLAHHDTLTGLPNRLKFREALEAELSSAWDNDSQVALMFFDLD 406

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK++ND  GH  GD+++  +S++L+          RL G+EFA        +E  +  N
Sbjct: 407 RFKEVNDVHGHATGDRLLVAVSERLLDALPRNAVAARLSGDEFAVILPDVDSREDGL--N 464

Query: 198 DLRKIIENSQINISSGP-SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             R+++ N    +S G   + ++ S G+       E    ++ +AD ALY AK  GRN+V
Sbjct: 465 TARRVVNNVGSPLSIGSLHLKVSASGGVTMFPLDGEDPDRLMNQADLALYRAKGQGRNQV 524

Query: 256 VCFS 259
             F 
Sbjct: 525 CDFD 528


>gi|332531933|ref|ZP_08407817.1| hypothetical protein PH505_ab00560 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038560|gb|EGI75003.1| hypothetical protein PH505_ab00560 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 1034

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 79/188 (42%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           + L E   +   I + +  D L+ L N       L          + +L ++  DID+FK
Sbjct: 586 TDLTEKKQADETIWRQAHYDHLTDLPNRLELKERLNQRFSSIVTPDNQLVVMLLDIDHFK 645

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
            IND  GH  GD ++  +S ++V       FV R+GG+EF        S +    +A+++
Sbjct: 646 DINDTLGHHYGDNLLKLVSQRIVQSAKNAEFVARIGGDEFVIVFNRIKSTRHINQIASNI 705

Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                 S         + I+ S GIA      E    ++  ADQA+Y AK +GRN    F
Sbjct: 706 LLS--LSSALHLENEELFISASMGIACAPNDGENTEQLLKAADQAMYKAKSNGRNCFEFF 763

Query: 259 SDIENNTC 266
           S       
Sbjct: 764 SADMREYA 771


>gi|304408789|ref|ZP_07390410.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica OS183]
 gi|307302792|ref|ZP_07582547.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica BA175]
 gi|304352610|gb|EFM17007.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica OS183]
 gi|306913152|gb|EFN43574.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica BA175]
          Length = 346

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 103/240 (42%), Gaps = 40/240 (16%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           +  L   +  N  +VI+   I+ L       +   L  +   +++L+  D L+G+ N   
Sbjct: 105 WLQLSEQVYHNGDMVIVCTDITQL-----KQVEFALRNAQTELNRLALTDELTGIANRRH 159

Query: 118 FISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           F   L    ++LS       +V  DID FK +ND +GH VGDK++   +  +        
Sbjct: 160 FFQQLEHEIKRLSRLQLPLCLVMMDIDNFKLVNDRYGHQVGDKILQHFTQFISARTRPYD 219

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILA---------NDLRKIIENSQINISSGPS------ 215
             GRLGGEEFA     ++   A  +           D+  I+ + Q   S+G S      
Sbjct: 220 IFGRLGGEEFALLLPETTVDAAQKIVMRMMSSLANEDISAIVADFQYQFSAGVSALTPVI 279

Query: 216 IHITI--SAGIAERCH-----------KEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           IH  I  SA IA+              +     ++  AD+ALY AK  GRNRVV + D+ 
Sbjct: 280 IHHGIDNSADIADVEQVALPVETGSQCRSDAEKLVAEADKALYQAKTLGRNRVVIWDDVM 339


>gi|293393471|ref|ZP_06637782.1| sensory box/GGDEF family protein [Serratia odorifera DSM 4582]
 gi|291424072|gb|EFE97290.1| sensory box/GGDEF family protein [Serratia odorifera DSM 4582]
          Length = 481

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +           + +V+ D+D FK
Sbjct: 35  SGTDITEERHAQERLRVLANTDIITGLPNRNAIQDKIIQAIEARATSSVGLVYLDLDNFK 94

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + RLGG+EF      +       LA  + 
Sbjct: 95  KVNDAYGHMFGDRLLVEVSRAILDCLNHGEVLARLGGDEFLVLVYQADRVMLQELAQRI- 153

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             I+  +     G   ++   S GIA    H + +  +I  AD A+YVAK+ G+     F
Sbjct: 154 --IDRLKTPFRIGLIEVYTGCSIGIALCPEHGDDLDGLIRSADTAMYVAKELGKRTFTVF 211

Query: 259 SDIENN 264
           S   N 
Sbjct: 212 SPEMNQ 217


>gi|218893937|ref|YP_002442806.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|218774165|emb|CAW29982.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
          Length = 542

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 56/161 (34%), Positives = 83/161 (51%), Gaps = 10/161 (6%)

Query: 106 IDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+GL NH+  +                LS    DID+FKQ+ND FGHP+GD+VI  L
Sbjct: 379 RDSLTGLYNHTHTLQLLEDARLRARRDGRPLSFAMLDIDHFKQVNDRFGHPMGDRVIKGL 438

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IH 217
           +  L         +GR GGEEFA     +    A ++ +++R+     +I+  + P+ + 
Sbjct: 439 ALFLKQRLRKTDHIGRYGGEEFAVVLPDTDLDAARLVLDEIRQRFA--EIHYPAQPTDLR 496

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            T S GIAE      I ++  +AD+ALY AK  GRNR+  +
Sbjct: 497 CTFSCGIAELTPDLDIKSMAKQADEALYRAKHGGRNRIEVY 537


>gi|188581410|ref|YP_001924855.1| diguanylate cyclase [Methylobacterium populi BJ001]
 gi|179344908|gb|ACB80320.1| diguanylate cyclase [Methylobacterium populi BJ001]
          Length = 417

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 102/247 (41%), Gaps = 29/247 (11%)

Query: 41  TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITI---------------SLLLGYI 85
            + F    F  Y+GL    GL       L L++  + +               + L+G  
Sbjct: 148 CLWFCGASFALYVGLVVGLGLFSAERSGLPLLVSGLILVPLKLCYSREWDARNTFLIGLR 207

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
                + L  +  R++ LS  D L+ L N   F   LG+        +  L ++  DID+
Sbjct: 208 VKLQAEALARANARLTVLSETDSLTALSNRRHFTERLGAAWGLAGEQDGWLGVILIDIDH 267

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           FK++ND  GH  GD+ +  ++  L   V        R GGEEFA    G+   +A  +  
Sbjct: 268 FKRLNDTAGHAEGDRCLVAVAAALQTSVEAWGGLAARYGGEEFAVLLPGADPVQARAVGE 327

Query: 198 DLRKIIENSQINISSGPSIH-ITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSG 251
            +R  + +  I      +   +T+S G+       R     +S ++  AD ALY AK  G
Sbjct: 328 VVRAAVADLAIRHPGLVANRPVTVSVGVTAARGRTRDFGIQVSDLLKAADFALYAAKNEG 387

Query: 252 RNRVVCF 258
           RNRV  F
Sbjct: 388 RNRVESF 394


>gi|217973294|ref|YP_002358045.1| PAS/PAC sensor-containing diguanylate cyclase [Shewanella baltica
           OS223]
 gi|217498429|gb|ACK46622.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica OS223]
          Length = 346

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 103/240 (42%), Gaps = 40/240 (16%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           +  L   +  N  +VI+   I+ L       +   L  +   +++L+  D L+G+ N   
Sbjct: 105 WLQLSEQVYHNGDMVIVCTDITQL-----KQVEFALRNAQTELNRLALTDELTGIANRRH 159

Query: 118 FISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           F   L    ++LS       +V  DID FK +ND +GH VGDK++   +  +        
Sbjct: 160 FFQQLEHEIKRLSRLQLPLCLVMMDIDNFKLVNDRYGHQVGDKILQHFTQFISARTRPYD 219

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILA---------NDLRKIIENSQINISSGPS------ 215
             GRLGGEEFA     ++   A  +           D+  I+ + Q   S+G S      
Sbjct: 220 IFGRLGGEEFALLLPETTVDAAQKIVMRMMSSLANEDISAIVADFQYQFSAGVSALTPVI 279

Query: 216 IHITI--SAGIAERCH-----------KEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           IH  I  SA IA+              +     ++  AD+ALY AK  GRNRVV + D+ 
Sbjct: 280 IHHGIDNSADIADVEQVALPVEIGSQCRSDAEKLVAEADKALYQAKTLGRNRVVIWDDVM 339


>gi|152997862|ref|YP_001342697.1| diguanylate cyclase [Marinomonas sp. MWYL1]
 gi|150838786|gb|ABR72762.1| diguanylate cyclase [Marinomonas sp. MWYL1]
          Length = 426

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 9/173 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L I   ++  L+  D L+ +LN  +F  +             K S +  D+D+FK+IN
Sbjct: 253 EDLQILNEKLKYLATRDSLTDVLNRGSFFETAQQLLELSQRQKSKASFILMDLDFFKRIN 312

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH +GDKV+   +  L         +GR+GGEEFA     +    A  LA+ +R+ I
Sbjct: 313 DTYGHFIGDKVLIHFTQTLQGFLRKSDLLGRVGGEEFAIFLPDTGLDAACQLADKIRQTI 372

Query: 204 ENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
            ++ + +  G ++  T+S G+ +     + I  +  R D  LY AK  GR+RV
Sbjct: 373 SDAALEV-EGKTVTYTVSLGVESSGPEDQLIDELFKRVDLKLYGAKDKGRDRV 424


>gi|85712210|ref|ZP_01043262.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Idiomarina
           baltica OS145]
 gi|85694018|gb|EAQ31964.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Idiomarina
           baltica OS145]
          Length = 450

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 10/168 (5%)

Query: 98  NRISQLSRIDCLSGLLNH---SAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           +R+ +L+  D L+GL N    + F   L        N    ++  DID+FKQ+ND FGH 
Sbjct: 284 DRLERLAYTDFLTGLSNRLFINEFFERLVYQNRERLNHYYCVL-VDIDHFKQLNDQFGHD 342

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V+  ++ +      +     R+GGEEF        + + A +   LRK IEN +I 
Sbjct: 343 AGDSVLQAVAIEFTDSLRSDDVCARVGGEEFMLLIHADDKVDIANIVERLRKNIENLKIE 402

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                 I  T+S G+ +   ++  +    RAD+ALY +K  GRN    
Sbjct: 403 HDDEI-ITTTVSIGVTKLQEQDSFNLAYKRADKALYQSKSDGRNCCRW 449


>gi|322433701|ref|YP_004215913.1| diguanylate cyclase/phosphodiesterase [Acidobacterium sp. MP5ACTX9]
 gi|321161428|gb|ADW67133.1| diguanylate cyclase/phosphodiesterase [Acidobacterium sp. MP5ACTX9]
          Length = 668

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 112/261 (42%), Gaps = 23/261 (8%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFL--FYIGLTPF---YGLEYILVENLSLVIISI 76
           F    F+ ++  +  +  AT++ + +     +Y+  + F       + L+E++ L ++  
Sbjct: 130 FGSLAFLAFYLDWEVLATATLVTLVDHLAMGYYLPASIFGTATASHWRLLEHV-LWVVFF 188

Query: 77  TISLLLGYISG----SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------Y 125
            I L+   + G      +         +   +  D L+GL N       +G         
Sbjct: 189 DIFLITSCVQGLKWLHAVARREADQELLLYQAYHDALTGLGNRLQIQKLMGELLMPGSKE 248

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
               +++  D+D FK++ND  GH VGD+++  +S +L+        + R+GG+EFA    
Sbjct: 249 PRPFALMAIDLDRFKEVNDTLGHQVGDELLRQVSQRLMAQIRKNDTLVRMGGDEFALVLD 308

Query: 186 GSSEQEAAILANDLR-KIIENSQINISSG-PSIHITISAGIAER-CHKEPISTIIYRADQ 242
           G +    A +A  +  +++E+     S G  +  I  S GI       +  + + + AD 
Sbjct: 309 GCTS---ARVAESIAGRMVESLNKPFSLGDHTARIGASIGICLHLDEGQDATDLFHHADL 365

Query: 243 ALYVAKKSGRNRVVCFSDIEN 263
           ALY  K SGRN  + F +   
Sbjct: 366 ALYKVKNSGRNSFMVFDENMR 386


>gi|285017933|ref|YP_003375644.1| hypothetical protein XALc_1142 [Xanthomonas albilineans GPE PC73]
 gi|283473151|emb|CBA15657.1| hypothetical protein XALc_1142 [Xanthomonas albilineans]
          Length = 329

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 76/268 (28%), Positives = 112/268 (41%), Gaps = 16/268 (5%)

Query: 4   SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63
           SL   L   L       +  P  +++  S FF +   TV    NI L  + L    G   
Sbjct: 71  SLSWLLGCALVCHALHHAAVPWLYLVMMSNFFVV-GRTVGLACNITLIVMLLLIIPGTLL 129

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL- 122
                 SL+ +S+ I+ L GYI    L++  +   ++ QL+  D L+ L N      SL 
Sbjct: 130 GPEHMFSLLTVSLLITGL-GYILSLRLEDDRV---QLEQLASHDALTALPNRRMLERSLS 185

Query: 123 ------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                      +  ++  DID+FK++ND  GH  GD+ +  L+  L +    P  V R G
Sbjct: 186 QCVADPRRTVRRHGLIVLDIDHFKKVNDLHGHAEGDRTLTELAALLRLQVHAPDEVFRFG 245

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236
           GEEF       S  E       L +   +    +   PS  IT+S G A  C ++     
Sbjct: 246 GEEFVIVTRLQSTHELTAFTKRLYEATRS----VLHSPSGAITVSLGAAMLCDEQQWQDW 301

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENN 264
             RAD ALY AK  GR+  V   D+  +
Sbjct: 302 FSRADTALYQAKNKGRDTYVVAEDVTQD 329


>gi|117620240|ref|YP_858643.1| GGDEF domain-containing protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561647|gb|ABK38595.1| GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 371

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 11/192 (5%)

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKL 129
             SL   + +  ++ EL      +   SR+D L+G+ N +                   L
Sbjct: 173 VASLYHRFSNADLVAELKAVSEHLKLTSRLDGLTGIANRAHLDYCLERAWRRCHRARAPL 232

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSS 188
           S+V  D+DYFKQ ND +GH +GD+ +  ++  L  V      +  R GGEEFA     +S
Sbjct: 233 SLVLVDVDYFKQFNDLYGHQLGDECLQQVAGLLAEVQRREDDLAARYGGEEFALLLPCTS 292

Query: 189 EQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAERCHKE--PISTIIYRADQALY 245
            Q A  +A ++R  +++  I       S  ++ S G+A     +   IS +I +AD ALY
Sbjct: 293 MQGALQIAENVRVALKDLSIPHQKSLVSGRVSCSFGVATLVPDQSLSISELIQKADAALY 352

Query: 246 VAKKSGRNRVVC 257
            AK +GR+R+  
Sbjct: 353 QAKHNGRDRIEV 364


>gi|146291244|ref|YP_001181668.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella putrefaciens CN-32]
 gi|145562934|gb|ABP73869.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella putrefaciens CN-32]
          Length = 1077

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 11/186 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + +       +   +  D L+GL N   F   L          + KL+I+  D+D FK 
Sbjct: 619 DISKRKQYEQDLWYQANFDSLTGLPNRKLFNERLQHEIQLAQHDSRKLAILLIDLDQFKY 678

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLR 200
           IND  GH  GD ++  ++ +L  + G   F+ R+GG+EF       + + A   +A  + 
Sbjct: 679 INDVQGHATGDLLLQDVAKRLESIGGQNDFIARIGGDEFVLILPRLTNELAIEHMATRII 738

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +        +   I I+ S GI         +S++    + A+Y AK +GRN    F+
Sbjct: 739 ETLAT--PFSLNEREIQISASFGIGVYPEDGLDVSSLTRNTEMAMYQAKDAGRNNFKYFT 796

Query: 260 DIENNT 265
              N  
Sbjct: 797 SGMNQA 802


>gi|229164248|ref|ZP_04292181.1| Sensory box/GGDEF [Bacillus cereus R309803]
 gi|228619188|gb|EEK76081.1| Sensory box/GGDEF [Bacillus cereus R309803]
          Length = 885

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
           Y+    + E      +I+ L+  D L+ L N  +F   L              +++F D+
Sbjct: 435 YLMIKDITESKQQQEQINFLAYHDTLTELANRRSFHQYLEKAIARAKLTKRPFAVMFLDL 494

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAIL 195
           D FK IND  GH VGD ++  ++ +L  +  + M + RL G+EF        ++ +   +
Sbjct: 495 DRFKVINDTLGHRVGDLLLIAVARRLEQISTSNMKLARLAGDEFTILIENYKKKPDVQKI 554

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
           A+ +   + N    I +   + I+ S GIA      E   +I+  AD A+Y AK  G+N 
Sbjct: 555 ADTIVAAM-NEPFEIENQH-LQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGKNG 612

Query: 255 VVCFS 259
              ++
Sbjct: 613 SSLYT 617


>gi|26987079|ref|NP_742504.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas putida KT2440]
 gi|24981704|gb|AAN65968.1|AE016225_1 sensory box protein [Pseudomonas putida KT2440]
          Length = 896

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + +  ++  RI +L+  D L+ L N  AFI SL           + ++  DID FK+IN
Sbjct: 453 DVTQTKLAQQRIERLAYTDNLTNLGNRPAFIRSLDERFARDGESSMCLLLVDIDNFKRIN 512

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++  L+ +L     +   + R    EFA     +S ++   +A  L   +
Sbjct: 513 DSLGHQTGDKLLISLARRLRNSLHSGGILARFASNEFAVLLDDTSLEDGQGVAQQLLCTL 572

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I++T S G+A    H    ++++  A  AL+ AK +G+++V  F+++ 
Sbjct: 573 DKPMF--VDNQLINVTASVGLACAPLHGVDPASLMKNAGLALHKAKANGKHQVQVFTEVL 630

Query: 263 NNTC 266
           N   
Sbjct: 631 NAEA 634


>gi|16803951|ref|NP_465436.1| hypothetical protein lmo1912 [Listeria monocytogenes EGD-e]
 gi|224501289|ref|ZP_03669596.1| hypothetical protein LmonFR_01990 [Listeria monocytogenes FSL
           R2-561]
 gi|254827203|ref|ZP_05231890.1| GGDEF domain-containing protein [Listeria monocytogenes FSL N3-165]
 gi|254831487|ref|ZP_05236142.1| hypothetical protein Lmon1_09038 [Listeria monocytogenes 10403S]
 gi|255026924|ref|ZP_05298910.1| hypothetical protein LmonocytFSL_12411 [Listeria monocytogenes FSL
           J2-003]
 gi|284802357|ref|YP_003414222.1| hypothetical protein LM5578_2113 [Listeria monocytogenes 08-5578]
 gi|284995499|ref|YP_003417267.1| hypothetical protein LM5923_2064 [Listeria monocytogenes 08-5923]
 gi|16411365|emb|CAC99990.1| lmo1912 [Listeria monocytogenes EGD-e]
 gi|258599586|gb|EEW12911.1| GGDEF domain-containing protein [Listeria monocytogenes FSL N3-165]
 gi|284057919|gb|ADB68860.1| hypothetical protein LM5578_2113 [Listeria monocytogenes 08-5578]
 gi|284060966|gb|ADB71905.1| hypothetical protein LM5923_2064 [Listeria monocytogenes 08-5923]
          Length = 375

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 106/232 (45%), Gaps = 11/232 (4%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           FS F+A +I      L+Y       G      E +   ++    +LL+ Y    I K   
Sbjct: 140 FSRFVALIILNFPAILYYFVNNFDEGRILRGFEIIEYFLLFFVTALLVFYACNYIDKSNL 199

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147
           +  N +++ +  D L+ L N   F               + LS+   DID+FK+IND  G
Sbjct: 200 VIQN-LTETAMTDSLTNLPNMRFFTQQFGWIFTKSQKRKKSLSLFIIDIDHFKEINDFHG 258

Query: 148 HPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           H  G+ V+A  S  L    F       R+GGEEFA        ++AA++A+  R+ +E +
Sbjct: 259 HQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTEQAALIADFFREEVERA 318

Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           +    +  S  +T+S G+A          ++   ADQALY AK++GRN++  
Sbjct: 319 KFPY-NPASGKVTVSIGVASASSNFSTTESLFEAADQALYQAKQNGRNQIAV 369


>gi|328543420|ref|YP_004303529.1| Response regulator containing a chemotaxis protein CheY doma in and
           a GGDEF domain [polymorphum gilvum SL003B-26A1]
 gi|326413165|gb|ADZ70228.1| Response regulator containing a CheY-like receiver doma in and a
           GGDEF domain [Polymorphum gilvum SL003B-26A1]
          Length = 300

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 12/175 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFFDIDYFKQIND 144
           + L +    + +L+  D L+ L N  AF+ +   +         +S++  DID+FK IND
Sbjct: 120 ERLNMMQRDLVRLATRDPLTELFNRRAFLDAAQKHIRDASDLIPVSVILLDIDHFKAIND 179

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD V+  +++ L     +    GRLGGEEFA    G +  +A I A  LR  ++
Sbjct: 180 AHGHAVGDLVLRAVAEILA---RSNELAGRLGGEEFAVIEPGCTATQACIRAEVLRADLQ 236

Query: 205 NSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +  +    I +T+S G+AE     ++     +  AD A+Y AK+ GRNRVV 
Sbjct: 237 RVDVRHADAV-IPVTVSLGVAEVPIGREDAFDYALCLADAAMYEAKRLGRNRVVA 290


>gi|296188601|ref|ZP_06856989.1| diguanylate cyclase (GGDEF) domain protein [Clostridium
           carboxidivorans P7]
 gi|296046865|gb|EFG86311.1| diguanylate cyclase (GGDEF) domain protein [Clostridium
           carboxidivorans P7]
          Length = 296

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 60/170 (35%), Positives = 86/170 (50%), Gaps = 10/170 (5%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHP 149
             ++  ++  D L+GL NH+  I  L     K       +S    DID+FK+IND +GH 
Sbjct: 127 QEKLKAMAIKDGLTGLYNHTFLIEILEKEIRKHEKKSSSISFAMIDIDHFKKINDVYGHL 186

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GDKV+  LSD L          GR GGEEF      S ++    L   LRK +++++  
Sbjct: 187 FGDKVLKGLSDILSESVANFGIAGRYGGEEFGIIFTNSDKEGLCNLCEKLRKNVQDNEFQ 246

Query: 210 ISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVC 257
           I +   + ITIS G   +   + +    II +AD+ALY AK SGRN+V  
Sbjct: 247 IGNDK-VKITISIGACFKEDVKDLKSDEIIRQADEALYKAKSSGRNKVEI 295


>gi|317152066|ref|YP_004120114.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942317|gb|ADU61368.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
          Length = 849

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 12/191 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDID 137
           S   + +      ++   +  D L+ L N +  +  +G    +         ++VF D+D
Sbjct: 357 SFRDITDRKEMEEQLRHQALHDPLTELANRTLCLDRVGQAMRRAGRRENYYFALVFLDLD 416

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA 196
            FK IND+ GH  GD V+   +++L     T   V R GG+EF       +S  EA  + 
Sbjct: 417 RFKVINDSLGHRFGDLVLMETANRLAQHVRTLDTVSRFGGDEFVLLLDELASPGEAIRIV 476

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             +R  +   +  I +G  +  T S GI          S ++ RA+ A++ AK++GRNR 
Sbjct: 477 KRIRDALA--KPFIFTGHEVQTTASFGIVLSPIPDIRASDVLQRANIAMHQAKEAGRNRF 534

Query: 256 VCFSDIENNTC 266
             F+     + 
Sbjct: 535 KVFTTRMLESA 545


>gi|192289266|ref|YP_001989871.1| diguanylate cyclase with PAS/PAC sensor [Rhodopseudomonas palustris
           TIE-1]
 gi|192283015|gb|ACE99395.1| diguanylate cyclase with PAS/PAC sensor [Rhodopseudomonas palustris
           TIE-1]
          Length = 313

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 12/183 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLS--IVFFDIDYFKQINDNF 146
            ++   + Q +  D L+GL N + F            +   +  +V  D+D FK++ND  
Sbjct: 132 RLAIEHLRQQAETDPLTGLANRARFQERYREVVSDRLHHGFASALVLIDLDGFKELNDTL 191

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-IIEN 205
           GH  GD  +  ++ +L   F +   + RLGG+EFA      +   A  +A+ LR+ I+  
Sbjct: 192 GHLAGDACLCEVAQRLRRAFNSAGLISRLGGDEFAIILR--TPTSAERIADVLRRTIVML 249

Query: 206 SQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           S+    +G  I ++ S G A   R H+  I+ +   AD ALY AK +GRNRV    D   
Sbjct: 250 SRPLFWNGHRIKVSASIGAALIGRPHQRRIADLFAEADLALYQAKAAGRNRVSLIGDQAQ 309

Query: 264 NTC 266
           +  
Sbjct: 310 SRA 312


>gi|118443481|ref|YP_878421.1| sensory box/GGDEF family protein [Clostridium novyi NT]
 gi|118133937|gb|ABK60981.1| sensory box/GGDEF family protein [Clostridium novyi NT]
          Length = 820

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 9/183 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142
           + +  ++  +I+ +   D L+GL N   F   + +  EK        +I+F DID FK +
Sbjct: 376 ILDRKLAEEKITYMVYNDILTGLPNKLYFEKHIKNIIEKHDKDKGHFAIMFLDIDNFKLV 435

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GHP GD+++   +D++  +      + R+GG+EF     G  +++   + N   K+
Sbjct: 436 NDTLGHPKGDELLKKFADRMKTIIDKNNLLARVGGDEFLLLIDGIEDEDTKHIDNIFLKM 495

Query: 203 IENS-QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                +  I       IT+S G A      E +  +I  AD A+Y AK SG+N +  FS 
Sbjct: 496 NNVLKEPFIIDNEEQFITVSIGTAFYPNDGENVEIMIRNADTAMYEAKNSGKNNLKFFSS 555

Query: 261 IEN 263
             N
Sbjct: 556 QAN 558


>gi|307299733|ref|ZP_07579526.1| diguanylate cyclase with TPR repeats [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306914599|gb|EFN44992.1| diguanylate cyclase with TPR repeats [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 521

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 15/173 (8%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
           +L  +   + + + ID L+GLLN           I+    Y   LS++  D+D FK +ND
Sbjct: 353 KLKKANELLEKQAEIDPLTGLLNQKKMYPIIEREINRATRYGTPLSMIMIDLDNFKNVND 412

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH  GD ++  ++  +        FV R GGEEF      S  Q A+  A+ LR  + 
Sbjct: 413 TYGHLQGDILLKNVAGIIRSSLRKVDFVFRYGGEEFLVLLPSSDLQMASSTADRLRDELA 472

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +           +T+SAG++     E  +  I + D  LY AK  G+NRV  
Sbjct: 473 KTTYP-------KVTMSAGVSSWS-GEDATHFIQKTDHLLYAAKGKGKNRVEF 517


>gi|260597953|ref|YP_003210524.1| hypothetical protein CTU_21610 [Cronobacter turicensis z3032]
 gi|260217130|emb|CBA30929.1| hypothetical protein CTU_21610 [Cronobacter turicensis z3032]
          Length = 352

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 65/254 (25%), Positives = 110/254 (43%), Gaps = 22/254 (8%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIF-----IANIFLFYIGLTPF-YGLEYILVEN-----L 69
           + SP T +   +I  S  +A   F      A +     G T F  GL   L  +      
Sbjct: 99  ALSPLTSVAIATILLSDRLAAGGFPLMRQAAGVMTLMFGATWFALGLPVHLAVSSRTLYA 158

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSL 122
           +L +ISI + L L  +S ++   L      + + +  D L  + N           +   
Sbjct: 159 TLPLISIYV-LALSMVSHALSARLREKTRELERYANTDPLLNIANRRRLEHDIDAALQRF 217

Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
             + +  +++F DID FK  ND +GH  GD+++   S+ L         V R GG+EF  
Sbjct: 218 HKHEQPAALMFIDIDDFKAANDRYGHEAGDQLLVTFSETLREATRAGDTVARFGGDEFVV 277

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRAD 241
               +S   A  +A+ +  + + +Q+N+    ++  T+S GIA         +  +  AD
Sbjct: 278 LLPDTSFGRACAIADRI--MAQAAQMNVFPDSALRCTLSIGIARATADMRGAAQWLKAAD 335

Query: 242 QALYVAKKSGRNRV 255
            ALY AK+ G+NR+
Sbjct: 336 DALYSAKREGKNRI 349


>gi|39933844|ref|NP_946120.1| diguanylate cyclase [Rhodopseudomonas palustris CGA009]
 gi|39647691|emb|CAE26211.1| putative diguanylate cyclase (GGDEF) with PAS/PAC domain
           [Rhodopseudomonas palustris CGA009]
          Length = 313

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 12/183 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLS--IVFFDIDYFKQINDNF 146
            ++   + Q +  D L+GL N + F            +   +  +V  D+D FK++ND  
Sbjct: 132 RLAIEHLRQQAETDPLTGLANRARFQERYREVVSDRLHHGFASALVLIDLDGFKELNDTL 191

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-IIEN 205
           GH  GD  +  ++ +L   F +   + RLGG+EFA      +   A  +A+ LR+ I+  
Sbjct: 192 GHLAGDACLCEVAQRLRRAFNSAGLISRLGGDEFAIILR--TPTSAERIADVLRRTIVML 249

Query: 206 SQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           S+    +G  I ++ S G A   R H+  I+ +   AD ALY AK +GRNRV    D   
Sbjct: 250 SRPLFWNGHRIKVSASIGAALIGRPHQRRIADLFAEADLALYQAKAAGRNRVSLIGDQAQ 309

Query: 264 NTC 266
           +  
Sbjct: 310 SRA 312


>gi|294665884|ref|ZP_06731151.1| two-component system response regulator [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604339|gb|EFF47723.1| two-component system response regulator [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 432

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 9/168 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+GL N   F+             ++ ++    DID+FK IND +GH  GD
Sbjct: 266 LQDLATRDFLTGLPNRRYFLEQSQRVIPKLLLEDQTVTAAMVDIDHFKHINDTWGHEAGD 325

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  ++  +         V R GGEEF     G     A      LR+ I   ++ +  
Sbjct: 326 QALRAVAASVSGHARPQDLVARFGGEEFCLLVPGLDAANATSYFETLRERISALRVRVGD 385

Query: 213 GPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++ +T+S G+       + +  ++  AD+ LY+AK  GRN+V   S
Sbjct: 386 -ETLSMTVSIGVCIASESDQSLHYLLNEADKHLYLAKAGGRNQVRLAS 432


>gi|260220538|emb|CBA28176.1| hypothetical protein Csp_A05970 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 543

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 81/192 (42%), Gaps = 19/192 (9%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-----------EKLSIVFFDIDYF 139
           +EL ++  ++ + S  D L+GL N      ++               + + +V  DID+F
Sbjct: 326 RELEVANRKLLESSMTDPLTGLWNRRYADLAIREEIALSMRNSDDAPQGIHLVLLDIDHF 385

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND FGH  GD V+  +S  L     +   + R GGEEF   A    +     L   +
Sbjct: 386 KSINDQFGHSYGDHVLKEISIILKNQCRSTDKIIRWGGEEFLIIAKDIKDYSIEFLVERI 445

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-----PISTIIYRADQALYVAKKSGRNR 254
           R  +EN       G  I  T S G A              T++  AD  +Y AK +GRN+
Sbjct: 446 RTSVENHSFISEDGKKIKCTCSMGFAAFPLSSQSFFPSWETVVSMADSCMYAAKNNGRNQ 505

Query: 255 VVCFS-DIENNT 265
              F  D + +T
Sbjct: 506 W--FGIDADMDT 515


>gi|258406476|ref|YP_003199218.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692]
 gi|257798703|gb|ACV69640.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692]
          Length = 252

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 11/179 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYF 139
            ++ +EL    + +S++S ID L+G+ N   F  ++ +  ++       L++VF D+DYF
Sbjct: 64  NTLNEELNAHKDVLSEMSYIDGLTGIANRRRFNETVEAEWQRGLRNNQALALVFLDLDYF 123

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           KQ NDN+GH +GD  +  ++  L          V R GGEEF      + ++ A  +   
Sbjct: 124 KQYNDNYGHNLGDTCLIDVAKALQQSAKRCNDLVARYGGEEFVILLPDTDQEGAFAVGQK 183

Query: 199 LRKIIENSQINISSGPSIH-ITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNR 254
           +   I N +I  +  P    +T S G+A            +I  AD  LY AK++GRN+
Sbjct: 184 VLDNIRNLEIPHAFSPIAQVVTASVGVAVTIPGAERTPQDLIQTADAQLYAAKEAGRNQ 242


>gi|218509758|ref|ZP_03507636.1| putative sensory box/GGDEF family protein [Rhizobium etli Brasil 5]
          Length = 195

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 59/197 (29%), Positives = 92/197 (46%), Gaps = 12/197 (6%)

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----- 121
           +N  ++ I+  I+ L     G  +++     ++  + S  D L+G+ N    ++      
Sbjct: 4   QNGWMLCIASDITRLRA--QGRTVRQ---DRDQAIKASYTDELTGVANRRFVMARVDDML 58

Query: 122 -LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                     +  FDID FKQIND FGH  GD V+   + ++          GR+GGEEF
Sbjct: 59  AAARTGGSGCLAVFDIDKFKQINDRFGHHAGDLVLRDFAHRIHQNVRRNDCFGRVGGEEF 118

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                 +S ++A  +   +  +I  S+  ++  P    T SAGIA     +  S +  RA
Sbjct: 119 LLVMPSTSPEDALDMVERMLTVIRFSR-PLADSPDFSYTCSAGIAASLPSDSASELYRRA 177

Query: 241 DQALYVAKKSGRNRVVC 257
           DQALY AK SGR+RV  
Sbjct: 178 DQALYDAKMSGRDRVRA 194


>gi|254416802|ref|ZP_05030551.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196176348|gb|EDX71363.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 342

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 100/208 (48%), Gaps = 11/208 (5%)

Query: 63  YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           Y L++   L++  + I  L   +   + +EL I+  ++ +L++ D L+G+ N   F   L
Sbjct: 134 YRLLDAYQLLVAQLYIHELATRLLKQLYQELEIANLQLEELAKSDGLTGVANRRRFDDYL 193

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGR 174
            +  ++       LS++  D+D FK  ND +GH  GD  +  ++  +   V      V R
Sbjct: 194 QTCWKQHCVGNSWLSLIMCDVDCFKYYNDTYGHQAGDDCLREVASAIQRQVKRPADLVAR 253

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAE--RCHKE 231
            GGEEF      +    A  +A  + + +    I  ++   S  +T+S G+A      + 
Sbjct: 254 YGGEEFVVILPLTPLDGATQVAQAIAQAVRTLNIPHATSFVSHCVTLSIGVASTIPNPRR 313

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
             +T+   AD ALY AK +GR+RV+ ++
Sbjct: 314 SPTTLTAAADAALYQAKSAGRDRVIVYT 341


>gi|194438098|ref|ZP_03070191.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 101-1]
 gi|194423034|gb|EDX39028.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 101-1]
          Length = 476

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 22/258 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LV 66
            + +WL        F+   + I+  +    F A +  I+ +F+    ++ +Y    I +V
Sbjct: 223 MIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVV 282

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             L++++I +            I   L ++ N    ++  D L+ + N + F + L    
Sbjct: 283 SKLTVMVIFMC----------HIFSALRVTKN----IAHRDPLTNIFNRNYFFNELTVQS 328

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +      ++  DID+FK++ND +GHPVGD+VI  + + +         + R+GGEEF 
Sbjct: 329 ASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFG 388

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYR 239
                   + A  LA  +R+ +E    +         +TIS G +  + +    + I   
Sbjct: 389 VLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRL 448

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK++GRN+VV 
Sbjct: 449 ADNALYEAKETGRNKVVV 466


>gi|294011328|ref|YP_003544788.1| putative signal transduction protein [Sphingobium japonicum UT26S]
 gi|292674658|dbj|BAI96176.1| putative signal transduction protein [Sphingobium japonicum UT26S]
          Length = 655

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 58/217 (26%), Positives = 101/217 (46%), Gaps = 24/217 (11%)

Query: 71  LVIISITISLLLGYISGS----ILKELFISYNR------ISQLSRIDCLSGLLNHSAFIS 120
           L I+   +   +  I+ +    +L+ L   Y +        +L+R D L+G+ N  A   
Sbjct: 176 LGILCFLMIFAMADITKATHRIVLEALQGKYEKTQLAVKFERLARFDSLTGVENRMAMQM 235

Query: 121 SLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            L           + +++ + D+D FK+IND+ GH +GD+++  ++++L         V 
Sbjct: 236 RLREMFDGRRSDKDPMAVFWMDLDRFKEINDSLGHMIGDQLLCRVAERLSHALDGRGHVA 295

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEP 232
           R GG+EF     G+   EA  +A D+  + E +      G  + +T S GIA      + 
Sbjct: 296 RFGGDEFVLICPGADRSEAERIAGDI--MAEFTHDFDVGGYLLGVTASMGIAVAPEDGQD 353

Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFS----DIENNT 265
              ++  AD ALY AK +GRNR   F+    + +N T
Sbjct: 354 SDELLQHADMALYQAKHAGRNRHAQFTWSMKERQNRT 390


>gi|262166357|ref|ZP_06034094.1| GGDEF family protein [Vibrio mimicus VM223]
 gi|262026073|gb|EEY44741.1| GGDEF family protein [Vibrio mimicus VM223]
          Length = 505

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 103/241 (42%), Gaps = 16/241 (6%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS----LVIISITISLLLGYISGS 88
           I   +F ++V+++ N+++    + P      +L +  +    +   S  IS  +   + +
Sbjct: 261 ILALLFFSSVMYVVNLWVVVTLIKPITAANQVLQQFKTSGGKMPDASTFISAEMKEFAST 320

Query: 89  I---LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFK 140
           I   + +L  S   +   S  D L+ + N       L  Y        L +   DIDYFK
Sbjct: 321 INHIVTQLDESQQVLRWQSEHDPLTRISNRRYLEKQLKGYLSDRPCRYLVLNLIDIDYFK 380

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199
             NDNFGH  GD+ +  ++  L  +       V R GGEEF       SE +A   A  +
Sbjct: 381 PFNDNFGHLAGDEALCSVAQALQAIEFDGEKIVTRFGGEEFCVVLASDSELDAEQFAQQI 440

Query: 200 RKIIENSQINISSGPSI-HITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              +    I         ++T+S G   A     +   ++ ++AD ALY AK+SGRNR V
Sbjct: 441 HTKVAELAIANPQDSDFQYLTVSIGGVYAISPRMDAYLSLFHQADMALYEAKESGRNRYV 500

Query: 257 C 257
            
Sbjct: 501 V 501


>gi|322417841|ref|YP_004197064.1| diguanylate cyclase [Geobacter sp. M18]
 gi|320124228|gb|ADW11788.1| diguanylate cyclase [Geobacter sp. M18]
          Length = 408

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 61/228 (26%), Positives = 106/228 (46%), Gaps = 17/228 (7%)

Query: 45  IANIFLFYIGLTPF--YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102
           +   F  YI +T +        L+   SL  I + +  +   +  S +KEL      + +
Sbjct: 182 VIGSFEVYIDVTKYRQQTTNAALLSLGSLCAILVVVFGISFLLMRSGIKELKEIQEVLRK 241

Query: 103 LSRIDCLSGLLN--------HSAFISSLGSYNEKLS-----IVFFDIDYFKQINDNFGHP 149
            + ID L+G+ N           F  +L    + L+      +  DID FK +ND +GH 
Sbjct: 242 QTLIDGLTGIFNKRQIELIGRREFARALRRREKGLADAEVGFIMIDIDRFKLMNDRYGHL 301

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD ++   ++++     +   VGR GGEEF     GS  ++   +A+ +  +I +    
Sbjct: 302 AGDVLLQQFAERVTSCLRSYDSVGRFGGEEFLVVLPGSDLEQTRSVAHKIWALIRDEPFR 361

Query: 210 ISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +  G  + ++ SAG+A      E +  ++ RADQ+LY AK  GR+RV+
Sbjct: 362 V-EGKPLQLSTSAGVATVERGDEDLLQVLKRADQSLYRAKSEGRDRVI 408


>gi|148553328|ref|YP_001260910.1| diguanylate cyclase [Sphingomonas wittichii RW1]
 gi|148498518|gb|ABQ66772.1| diguanylate cyclase [Sphingomonas wittichii RW1]
          Length = 378

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 63/184 (34%), Positives = 92/184 (50%), Gaps = 9/184 (4%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
           GS +  L         ++  D L+GL N  AF + L             LS+ F DID+F
Sbjct: 195 GSQMSSLQGELAEAQAVAESDPLTGLANRRAFQARLARAMAQAAAEGTPLSVAFCDIDHF 254

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K INDN GH  GD+++  +++ LV   G   FVGR GGEEF     G   + AA+  +++
Sbjct: 255 KSINDNHGHDTGDRILKMVAEALVEGVGEDAFVGRFGGEEFLILFDGIMARRAAMRVDEV 314

Query: 200 RKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R  +    +    +  P   +T SAG+A+    E    ++ RAD+ALY AK  GRNRV+ 
Sbjct: 315 RDELSGRHLVSKTTGEPLGTVTFSAGVAQLLVGEDDGAMLRRADEALYAAKNGGRNRVII 374

Query: 258 FSDI 261
             + 
Sbjct: 375 HGEE 378


>gi|14021745|dbj|BAB48357.1| response regulator protein [Mesorhizobium loti MAFF303099]
          Length = 408

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 9/175 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           +L  S  +  +++  D L+GL N     S L        +    LS++  D+D FK IND
Sbjct: 231 QLRASVTQTIEMAVTDGLTGLHNRRYLDSHLQTLFDRAVARRRPLSVMITDLDRFKSIND 290

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+V+   + +L           R GGEEF      +    A  +A  +R  I 
Sbjct: 291 AHGHDGGDEVLREFARRLRKNVRGIDLACRFGGEEFVVVMPDTDGAVAEKVAERIRAEIA 350

Query: 205 NSQINI-SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
                I + G +I +T+S G++      + ++ ++ RAD ALY AK  GRNRVV 
Sbjct: 351 QKPFAIGADGKTIEVTVSVGVSSVLKGVDTVAALMKRADLALYEAKSGGRNRVVA 405


>gi|15641198|ref|NP_230830.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121587807|ref|ZP_01677566.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|153819081|ref|ZP_01971748.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|153823230|ref|ZP_01975897.1| GGDEF family protein [Vibrio cholerae B33]
 gi|227081357|ref|YP_002809908.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|229505221|ref|ZP_04394731.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229511109|ref|ZP_04400588.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229518228|ref|ZP_04407672.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229608240|ref|YP_002878888.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254848311|ref|ZP_05237661.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255745593|ref|ZP_05419541.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262158333|ref|ZP_06029449.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|298498713|ref|ZP_07008520.1| GGDEF family protein [Vibrio cholerae MAK 757]
 gi|9655662|gb|AAF94344.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121547971|gb|EAX58052.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|126510364|gb|EAZ72958.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|126519244|gb|EAZ76467.1| GGDEF family protein [Vibrio cholerae B33]
 gi|227009245|gb|ACP05457.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|229344943|gb|EEO09917.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229351074|gb|EEO16015.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229357444|gb|EEO22361.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229370895|gb|ACQ61318.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254844016|gb|EET22430.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255736668|gb|EET92065.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262029774|gb|EEY48422.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|297543046|gb|EFH79096.1| GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 443

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 18/230 (7%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102
           +F+A + ++ +       LE  +  N   V+ +      L  ++ S    L     +  +
Sbjct: 219 LFLAMLIMWAVAGAWLSALE--IRRNRREVLRARMRQEHLQRLNHS----LHEQNIKFVE 272

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++  D L+G +N       L             +S++F DIDYFKQ+ND +GH +GD ++
Sbjct: 273 MAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDLL 332

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +  +         + R GGEEF      ++ ++A  LA  LR  I +          
Sbjct: 333 REFALVISREIRESDKLVRWGGEEFVVFCAQTTLEQAIELAERLRAKIADHSWIHGGA-- 390

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             IT S GIA+    E I+  + RAD+ALY AK+ GRNR+     +   +
Sbjct: 391 --ITCSIGIAQM-GDERITETVSRADEALYRAKRLGRNRIEVHYGLMAKS 437


>gi|320335163|ref|YP_004171874.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Deinococcus maricopensis DSM 21211]
 gi|319756452|gb|ADV68209.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Deinococcus maricopensis DSM 21211]
          Length = 899

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 4/187 (2%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS 130
           L++ ++  +  +  I+  +  ++    +R    +  D L+GL N   F + L +      
Sbjct: 165 LLLNTVGYAATVAVIAERV--KVLKVRSRWQAEAHTDALTGLNNRRLFTAHLEALRPGDH 222

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++  D D+FK++ND FGH VGD+V+  ++  L+          RLGGEEFA    G S  
Sbjct: 223 LILVDADHFKRVNDVFGHDVGDEVLQGIAQALITSAPPGTRAYRLGGEEFALIVPGRSGA 282

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250
           +A  +A          +  + +G ++ +T S G+A+    E  +    RAD ALY AK +
Sbjct: 283 QALKVAQACWAAARTPR--VQAGQTLRVTCSVGVADVLPGEAPAATYKRADAALYAAKTA 340

Query: 251 GRNRVVC 257
           GR++VV 
Sbjct: 341 GRDQVVV 347


>gi|261856032|ref|YP_003263315.1| diguanylate cyclase [Halothiobacillus neapolitanus c2]
 gi|261836501|gb|ACX96268.1| diguanylate cyclase [Halothiobacillus neapolitanus c2]
          Length = 247

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 61/181 (33%), Positives = 88/181 (48%), Gaps = 11/181 (6%)

Query: 86  SGSILKELFISYNRISQLS-------RIDCLSGLLNHSAFISSLGSYNE--KLSIVFFDI 136
           S    +EL  +  R+ +L+       R D L+ LLN +  I+      +  K +++  DI
Sbjct: 61  SDRTERELNNANQRLRELTEALTFQNRHDGLTRLLNRTTLINEAEQLLKTTKSALIMIDI 120

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FKQIND +GHP GD+V+  L+D L  +   P   GRLGGEEFA     +  +E   LA
Sbjct: 121 DHFKQINDRYGHPTGDRVLVGLADTLRSIIQPPALCGRLGGEEFAIVLPTNQLEEVISLA 180

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             + + I N +     G  + +T S  I          T+    D ALY AK  GRNR+ 
Sbjct: 181 EKISEEIRNLRCESELG--LRMTASLSITLARPGVNFDTLYLCGDDALYRAKHDGRNRIE 238

Query: 257 C 257
            
Sbjct: 239 V 239


>gi|319777826|ref|YP_004134256.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171545|gb|ADV15082.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 417

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 67/264 (25%), Positives = 112/264 (42%), Gaps = 23/264 (8%)

Query: 15  HEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLF-------------YIGLTPFYGL 61
            + N+  F   T +I F I  +  +        ++L                G   F   
Sbjct: 134 RQLNVMLFVAITAIIIFGIPLAWTMTIAALALGLYLMLQLQNPAIAHGSAVAGTLFFASG 193

Query: 62  EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
            +  V    ++ I    + L        + EL  + +R+  L+R D L+G+ N      +
Sbjct: 194 IFATVAARRIMTILAQKTFLFELRDRRRVAELAKANDRLVLLARTDPLTGISNRRWMTET 253

Query: 122 LGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVG 173
           L              +++  DID FK++ND+ GH  GD+ +  ++  L          V 
Sbjct: 254 LERLWGSDKRCLAGAAMLMCDIDNFKKLNDHLGHAEGDRCLVRVATILKENVRRDRDHVA 313

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKE- 231
           R GGEEF     G +E+EAA +A  +RK +E + +          +T+S G+A +  +  
Sbjct: 314 RYGGEEFLVLLPGVNEEEAAAVAERMRKSVEAAALPNPGSRVSRWVTLSIGVAVQTSEAI 373

Query: 232 PISTIIYRADQALYVAKKSGRNRV 255
               +  RAD ALY+AK++GRNRV
Sbjct: 374 SPEQLQQRADAALYLAKQTGRNRV 397


>gi|298292200|ref|YP_003694139.1| diguanylate cyclase [Starkeya novella DSM 506]
 gi|296928711|gb|ADH89520.1| diguanylate cyclase [Starkeya novella DSM 506]
          Length = 389

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 61/196 (31%), Positives = 99/196 (50%), Gaps = 13/196 (6%)

Query: 73  IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KL 129
           +++I +++ L Y    +++E     +R    +R D L+GLLN   F     +  E    +
Sbjct: 192 LVAIGVAIFLNYALVLMVRERAELLHR--SAARRDELTGLLNRRGFSELALANCETAGPV 249

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID+FKQ+ND FGH  GD+V+   +  L +       VGR+GG+EFAA   G+SE
Sbjct: 250 ALIILDIDHFKQVNDRFGHATGDRVLEAFAHVLRINLRQADIVGRIGGDEFAALLPGASE 309

Query: 190 QEAAILANDLRKIIENSQINI-SSGPSIHITISAGI-------AERCHKEPISTIIYRAD 241
             A   A  +R+  +     +   G  +  + S G+       A       +  ++  AD
Sbjct: 310 AAAGQAAERIREAFQAGVGQMRPDGARVECSSSIGVACGDFPDAPSDGAARLEALLAWAD 369

Query: 242 QALYVAKKSGRNRVVC 257
           +ALY AK +GRNRVV 
Sbjct: 370 RALYEAKSAGRNRVVV 385


>gi|289548674|ref|YP_003473662.1| diguanylate cyclase/phosphodiesterase [Thermocrinis albus DSM
           14484]
 gi|289182291|gb|ADC89535.1| diguanylate cyclase/phosphodiesterase [Thermocrinis albus DSM
           14484]
          Length = 844

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 80/194 (41%), Gaps = 10/194 (5%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124
           + +   +S LL  I    +K +      I   +  D L+ L N   F             
Sbjct: 395 IAVESLLSTLLNVIGS--VKAIHRFTKEIEYYATRDPLTELYNQRVFWELLSYEVDRARR 452

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
           +  K +++  D+D FK IND++GH  GD  +  ++  L+        V R GG+EF A  
Sbjct: 453 HQYKFALLVVDVDNFKVINDSYGHTFGDMFLRHVAALLLSSLRREDIVARYGGDEFVAIL 512

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQA 243
             + E  A   A  +    E   +    G ++  T S G+A    H E    +   AD+ 
Sbjct: 513 PYTDETGAYTAALRILDAFEREGMTAPDGRTVRATASIGVAVFPDHGEDPRHLFSVADEM 572

Query: 244 LYVAKKSGRNRVVC 257
           +Y  K+SG++ V  
Sbjct: 573 MYKVKRSGKHGVRI 586


>gi|229136118|ref|ZP_04264871.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196]
 gi|228647277|gb|EEL03359.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196]
          Length = 734

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 93/214 (43%), Gaps = 11/214 (5%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           +  ++    I   +++ V I +   +   Y+    + E      +I+ L+  D L+ L N
Sbjct: 255 IRAYHKNRDIYYLHVTAVPIFLKEHISGAYLMIKDITESKQQQEQINFLAYHDTLTELAN 314

Query: 115 HSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
             +F   L              +++F D+D FK IND  GH VGD ++  ++ +L  +  
Sbjct: 315 RRSFHQQLEKAIARAKISKRPFAVMFLDLDRFKVINDTLGHRVGDLLLIAVAKRLERIST 374

Query: 168 TPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
           + M + RL G+EF        E  +   +A+ +  ++  ++        + I+ S GIA 
Sbjct: 375 SNMKLARLAGDEFTILIEDYKEDRDVQKIADMI--VLSMNEPFEIENQHLQISPSIGIAI 432

Query: 227 RCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                E   +I+  AD A+Y  K  G+N    ++
Sbjct: 433 YPEAGEDPLSILQHADMAMYETKNKGKNGSSLYT 466


>gi|298529787|ref|ZP_07017190.1| response regulator receiver modulated diguanylate cyclase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511223|gb|EFI35126.1| response regulator receiver modulated diguanylate cyclase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 427

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 57/165 (34%), Positives = 81/165 (49%), Gaps = 9/165 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           I +L+  D L+GLLN  +F +S           N  L +   DID+FK+ ND +GH  GD
Sbjct: 264 IRELAEKDFLTGLLNRRSFFNSGEKLFANALRGNLNLVVSMMDIDHFKKCNDKYGHDAGD 323

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           +VI F++D+L         V R GGEEF    +    +    +   +R  IENS I  S 
Sbjct: 324 EVICFVADRLKSSLRQSDLVARFGGEEFCVVGVNMHSENITEVFEKIRADIENSVIR-SG 382

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              + +T+S G+     K  +  +I  AD  LY AK  GRN+V  
Sbjct: 383 EHEMRVTVSIGVCSTL-KSSLEEMITCADDMLYKAKNQGRNQVCV 426


>gi|190573466|ref|YP_001971311.1| putative GGDEF and GAF signalling protein [Stenotrophomonas
           maltophilia K279a]
 gi|190011388|emb|CAQ45003.1| putative GGDEF and GAF signalling protein [Stenotrophomonas
           maltophilia K279a]
          Length = 356

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 64/203 (31%), Positives = 94/203 (46%), Gaps = 17/203 (8%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKE----LFISYNRISQLSRIDCLSGLLNHSAFI 119
           +LV  L    + I   +L       +L E    L      +++ SR D L+GL N  A  
Sbjct: 156 MLVMELRRFALDIQKHMLERDDYERLLSEYQDVLLAQNADLAEQSRTDALTGLPNRRAMA 215

Query: 120 SSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
           ++L     ++        +   DID+FK IND  GH  GD+V+A L   L   F      
Sbjct: 216 AALEEAVAEIDGQPGVACVALLDIDHFKHINDFQGHATGDRVLAELGVLLRSHFAGRGMA 275

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232
            R GGEEF A   G+  + A +    LR  + +  +         +TIS G+A+    E 
Sbjct: 276 ARYGGEEFVAVMPGTDLRTAELQCEFLRLAVADLPLGFP------VTISIGVAQHQPGES 329

Query: 233 ISTIIYRADQALYVAKKSGRNRV 255
           +  ++ RAD+ALY AK +GRNRV
Sbjct: 330 VDEMLARADKALYRAKGNGRNRV 352


>gi|74316505|ref|YP_314245.1| diguanylate cyclase [Thiobacillus denitrificans ATCC 25259]
 gi|74056000|gb|AAZ96440.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 363

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 108/243 (44%), Gaps = 19/243 (7%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS 86
           F + +    ++F  T +    +   Y    P +    +L   L++ I +   SL+ GY  
Sbjct: 113 FGVKWMALSALFATTGLIAVGLLSDYWTQHPIWIFSLLL---LNVAIPAYVASLIRGYHE 169

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
                +L      + +++  D L+GL N +AF S L             +++++FD+D F
Sbjct: 170 SR--AQLARYAGEMEEIALTDTLTGLPNRAAFFSQLQKAVSHAQRTQSSIALLYFDLDGF 227

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILAND 198
           KQ+ND+ GH  GD ++   + ++         + RLGG+EF         E+    +A  
Sbjct: 228 KQVNDSLGHAHGDSLLKQTALRVGQCLRGEDVLARLGGDEFVVLLNAQDKEKRVEKVAAR 287

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPI----STIIYRADQALYVAKKSGRNR 254
           + + + +  I+   G  + +T SAGI               +I+ AD+ +Y AKK G+N+
Sbjct: 288 ILQAVAS--IDQVDGHRVEVTASAGIVLVSGAHAAALGSEGMIHEADKNMYAAKKKGKNQ 345

Query: 255 VVC 257
            V 
Sbjct: 346 TVL 348


>gi|21231313|ref|NP_637230.1| c-di-GMP phosphodiesterase A [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768635|ref|YP_243397.1| c-di-GMP phosphodiesterase A [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21112969|gb|AAM41154.1| c-di-GMP phosphodiesterase A [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573967|gb|AAY49377.1| c-di-GMP phosphodiesterase A [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 726

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 81/184 (44%), Gaps = 12/184 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144
           E      R+ QL+  D L+GL N   F +             E  +++F +ID FK IND
Sbjct: 288 EREQIRQRVHQLAFYDALTGLPNRIMFSARAEQALTHAEYAGEPAALMFINIDRFKLIND 347

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH  GD ++  ++ ++         + RL G+EFA A    S ++A+  A  L   I 
Sbjct: 348 SQGHAAGDGLLRDIALRIGEQLTATAMLARLAGDEFALALPQCSAEQASATAERLLGTIA 407

Query: 205 NSQINISSGP-SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
                +  G  ++H + S G+A        I+ ++  AD A+  AKK G  R   FS   
Sbjct: 408 G---PLPVGHMTVHPSASVGVAMFPEDGRDINILLRHADLAMNRAKKEGGGRFRFFSADM 464

Query: 263 NNTC 266
           N   
Sbjct: 465 NRMA 468


>gi|88861310|ref|ZP_01135941.1| putative orphan protein; putative GGDEF protein [Pseudoalteromonas
           tunicata D2]
 gi|88816689|gb|EAR26513.1| putative orphan protein; putative GGDEF protein [Pseudoalteromonas
           tunicata D2]
          Length = 794

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 88/196 (44%), Gaps = 15/196 (7%)

Query: 81  LLGYISG--SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------- 130
           +L YIS   S++    ++   +      D L+GL N    I  L     +L+        
Sbjct: 345 ILTYISRQISLVINRELTRQSLEHKVMHDELTGLANRVLLIDRLNQAITRLARQTYSTMH 404

Query: 131 -IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-S 188
            +++ D D FK IND  GH VGDK +  +   +         + RLGG+EFA       S
Sbjct: 405 ALLYLDFDRFKIINDTLGHQVGDKFLIQICLLISSCIRQSDTLARLGGDEFAILMEDIHS 464

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVA 247
           + E  +L   +   ++   I I  G  +  + S GIA  CH+   +  I+ RAD A+Y A
Sbjct: 465 QNEVKLLVERIHLALKE-PIEI-DGNLLQGSTSIGIAFACHETDAAYKILQRADAAMYEA 522

Query: 248 KKSGRNRVVCFSDIEN 263
           K  GR +V  FS+   
Sbjct: 523 KSLGRGQVQYFSESMR 538


>gi|94310036|ref|YP_583246.1| diguanylate cyclase [Cupriavidus metallidurans CH34]
 gi|93353888|gb|ABF07977.1| Putative diguanylate cyclase (GGDEF domain) [Cupriavidus
           metallidurans CH34]
          Length = 653

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 98/223 (43%), Gaps = 24/223 (10%)

Query: 52  YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
            I +    G  Y+LV    L     +++     ++   +         +   + +D L+G
Sbjct: 428 AIPMLTRDGTRYMLVHCAQLEFGGESVASKAVLVTLVDVNSQQQMLKELRTQADLDALTG 487

Query: 112 LLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           L N   F ++              LSI+  D+D FK++ND +GH  GD+V+  ++ Q   
Sbjct: 488 LANRRYFENAAQKAVMHARKQGSALSILALDLDLFKRVNDTYGHAAGDRVLQVVARQFEG 547

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
              +     R+GGEEF A    ++  +A ++A  +R  I+N+ I + SG +I  T+S GI
Sbjct: 548 ALRSTDLGARIGGEEFTAILFDTALGQAQVIAERIRAAIQNTPIILESGEAITQTVSIGI 607

Query: 225 AERCHKEPISTIIYRADQ---------ALYVAKKSGRNRVVCF 258
           A     E         D          ALY AK +GRNRV  +
Sbjct: 608 AAYREDES--------DLAAAQERADAALYSAKAAGRNRVHVY 642


>gi|15600036|ref|NP_253530.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107103942|ref|ZP_01367860.1| hypothetical protein PaerPA_01005013 [Pseudomonas aeruginosa PACS2]
 gi|116052991|ref|YP_793309.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|254238435|ref|ZP_04931758.1| hypothetical protein PACG_04577 [Pseudomonas aeruginosa C3719]
 gi|254244259|ref|ZP_04937581.1| hypothetical protein PA2G_05109 [Pseudomonas aeruginosa 2192]
 gi|296391675|ref|ZP_06881150.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|9951113|gb|AAG08228.1|AE004897_6 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115588212|gb|ABJ14227.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126170366|gb|EAZ55877.1| hypothetical protein PACG_04577 [Pseudomonas aeruginosa C3719]
 gi|126197637|gb|EAZ61700.1| hypothetical protein PA2G_05109 [Pseudomonas aeruginosa 2192]
          Length = 542

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 56/161 (34%), Positives = 83/161 (51%), Gaps = 10/161 (6%)

Query: 106 IDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+GL NH+  +                LS    DID+FKQ+ND FGHP+GD+VI  L
Sbjct: 379 RDSLTGLYNHTHTLQLLEDARLRARRDGRPLSFAMLDIDHFKQVNDRFGHPMGDRVIKGL 438

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IH 217
           +  L         +GR GGEEFA     +    A ++ +++R+     +I+  + P+ + 
Sbjct: 439 ALFLKQRLRKTDHIGRYGGEEFAVVLPDTDLDAARLVLDEIRQRFA--EIHYPAQPTDLR 496

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            T S GIAE      I ++  +AD+ALY AK  GRNR+  +
Sbjct: 497 CTFSCGIAELTPDLDIKSMAKQADEALYRAKHGGRNRIEVY 537


>gi|229099734|ref|ZP_04230660.1| Sensory box/GGDEF [Bacillus cereus Rock3-29]
 gi|228683704|gb|EEL37656.1| Sensory box/GGDEF [Bacillus cereus Rock3-29]
          Length = 909

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 95/214 (44%), Gaps = 11/214 (5%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           +  ++    I   +++ V I +   +   Y+    + E      +I+ L+  D L+ L N
Sbjct: 430 IRAYHKNRDIYYLHVTAVPIFLKDHISGVYLMIKDITESKQQQEQINFLAYHDTLTELAN 489

Query: 115 HSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
             AF   L              +++F D+D FK IND  GH VGD ++  ++ +L  +  
Sbjct: 490 RRAFHQYLEKAIARAKISKSSFAVMFLDLDRFKVINDTLGHRVGDLLLIAVAKRLERLST 549

Query: 168 TPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
             M + RL G+EF        ++ +   +A+ +  ++  ++        + I+ S GIA 
Sbjct: 550 QHMKLARLAGDEFTILIENYKKRTDVKKIADMI--VVAMNKPFEIENQHLRISPSIGIAI 607

Query: 227 RCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                E   +I+  AD A+Y AK  G+NR   ++
Sbjct: 608 YPEAGEDPLSILQHADMAMYEAKNKGKNRSSLYT 641


>gi|158425346|ref|YP_001526638.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158332235|dbj|BAF89720.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 366

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 61/257 (23%), Positives = 109/257 (42%), Gaps = 10/257 (3%)

Query: 10  SIWLCHEKNLESFSPHTFM-IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           +++L  E  + +F         F +   +F    +  A + ++   +T    +    +  
Sbjct: 109 ALFLVPEDEMRAFWTLALTGTGFLVLGPVFGWFSVACALVMVWAAAMTGALAVSLFAMST 168

Query: 69  LSLVIISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124
               I+  +           + L  +  +   +   +R D L+GLLN  A   +      
Sbjct: 169 YCFCIVMTSAMFHAYNRHAELALHNIEAANAALRDATRHDTLTGLLNLPALRDAAAGLAG 228

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
               +  L++ F D+D+FK IND FGH  GD V+  ++  +         V R+GGEEFA
Sbjct: 229 GHGESAPLALAFIDVDHFKAINDRFGHAAGDSVLQTVAHAISGAARPQDLVARIGGEEFA 288

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRA 240
               G     A   A+ +R  +    + +    ++ +TIS G+ A +   + +  ++ RA
Sbjct: 289 IIMPGQDLAHATAAADKVRLAVAERPVTV-GKETLRVTISVGVTACQPPHQALDWMLQRA 347

Query: 241 DQALYVAKKSGRNRVVC 257
           D A+Y AK  GRNRV  
Sbjct: 348 DMAMYAAKADGRNRVRA 364


>gi|121608637|ref|YP_996444.1| diguanylate cyclase [Verminephrobacter eiseniae EF01-2]
 gi|121553277|gb|ABM57426.1| diguanylate cyclase [Verminephrobacter eiseniae EF01-2]
          Length = 352

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 31/196 (15%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------------------------NE 127
           +++ +Y  +   S  D L+GL N   F      +                         E
Sbjct: 144 QVYQNYQSLLDYSERDALTGLFNRKTFDEQFSRHALHGLVSRPDAAPPVFACNAHVLPGE 203

Query: 128 KL--SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
            +   +   DID+FKQ+ND FGH  GD+V+  +++ L   F +   V R GGEEF     
Sbjct: 204 PVQQWLAVVDIDHFKQVNDRFGHLYGDEVLILIANILRNSFRSHDRVFRFGGEEFVVLLR 263

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            ++   A  + N  R  ++             +T+S G        P+  I+ +ADQALY
Sbjct: 264 STTLGTAHKVFNRFRMAVQEYPFP----QVGQVTVSLGFVSTARGAPVE-ILGQADQALY 318

Query: 246 VAKKSGRNRVVCFSDI 261
            AK+ GRN+V  + D+
Sbjct: 319 YAKEHGRNQVCFYDDL 334


>gi|229015952|ref|ZP_04172914.1| Sensory box/GGDEF [Bacillus cereus AH1273]
 gi|229022170|ref|ZP_04178721.1| Sensory box/GGDEF [Bacillus cereus AH1272]
 gi|228739171|gb|EEL89616.1| Sensory box/GGDEF [Bacillus cereus AH1272]
 gi|228745345|gb|EEL95385.1| Sensory box/GGDEF [Bacillus cereus AH1273]
          Length = 569

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 88/175 (50%), Gaps = 6/175 (3%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147
           + L +S +R  +L+  D L+ L N    I+++     +     +++FD+D FK +ND  G
Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNKMIAEKIEFGMIYFDLDRFKLVNDTLG 194

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H +GD +++ ++ +L  V G    + RLGG+EF       ++ E   LA  +    +   
Sbjct: 195 HMLGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKTHTQDEMRQLATSVLSCFQA-- 252

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
             +  G  ++I+ S G+       + + T++  +D A+Y AK+ GRN    F+D 
Sbjct: 253 PFMLEGHEVYISASLGLCSYPQDGKDVETLLKNSDLAMYSAKEQGRNAACFFTDE 307


>gi|220923410|ref|YP_002498712.1| PAS/PAC and MHYT sensor-containing diguanylate
           cyclase/phosphodiesterase [Methylobacterium nodulans ORS
           2060]
 gi|219948017|gb|ACL58409.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Methylobacterium nodulans ORS 2060]
          Length = 794

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 11/186 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           ++   L+    +  RI  L+  D L+GL N ++F   L        +   KL+++  D+D
Sbjct: 345 VAVRDLRARRQAEGRIQFLAHHDALTGLANRTSFTQRLDLELKLAEATGRKLAVLCLDLD 404

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK++ND FGH  GD ++  ++  +  + G    + RLGG+EFA  A       A  LA 
Sbjct: 405 RFKEVNDLFGHAAGDAMLVNVARVVTGILGETQMMARLGGDEFAVLAACDHAITAGHLAE 464

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256
            + + + +   + ++GP   +  S GIA           ++  AD ALY AK  GR    
Sbjct: 465 RILEALRSENAD-AAGPL--VATSIGIALYPDDASERDVLLSHADTALYRAKSEGRGTYR 521

Query: 257 CFSDIE 262
            F    
Sbjct: 522 FFEHKM 527


>gi|149194946|ref|ZP_01872039.1| hypothetical protein CMTB2_08800 [Caminibacter mediatlanticus TB-2]
 gi|149134867|gb|EDM23350.1| hypothetical protein CMTB2_08800 [Caminibacter mediatlanticus TB-2]
          Length = 235

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 101/206 (49%), Gaps = 13/206 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAF--- 118
           L + L L I  ++  L+   IS  + K   E  +    + +LS  D L+   N  AF   
Sbjct: 30  LYDKLILTISFLSFYLISFIISYYLEKFSFETSLKNELLEKLSFFDYLTEAYNRRAFFKF 89

Query: 119 ----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
               I+     N+ L+++  DIDYFK+IND +GH VGD V+      +           R
Sbjct: 90  ANILINDAKRENKNLALLMMDIDYFKKINDTYGHEVGDIVLKEFVSLIKKNIRKNDLFAR 149

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPI 233
           +GGEEF      ++E +   +AN + K+IE SQI I     I  TIS G      + + +
Sbjct: 150 IGGEEFVLLIKINNEYQPYSIANKILKLIETSQI-IYKNYKIKFTISIGGYIFNPNTDSL 208

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
            + + +AD+ALY AK+  RN +V F+
Sbjct: 209 ESALAKADKALYKAKER-RNTIVIFN 233


>gi|332993933|gb|AEF03988.1| sensory box protein [Alteromonas sp. SN2]
          Length = 1514

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 7/184 (3%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISS---LGSYNEKLSIVFFDIDYFKQIND 144
            S +     +   + +L+ ID L+ L N S + +S   L       +++  D+D FK+IND
Sbjct: 1065 SDITSRKSTEKELLKLANIDPLTELPNRSFYQASHQNLVRKGAPHTLLCLDMDNFKKIND 1124

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203
            + GH  GD +I  ++ +L  + G      RLGG+EF+     S         A +L   +
Sbjct: 1125 SLGHQTGDILIKQIAKRLQRITGKNATCYRLGGDEFSVLMEDSADIHTVTHYAQNLLDTL 1184

Query: 204  ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
               +  I +     +  S GIA           ++  AD A+Y AK +G N    FS   
Sbjct: 1185 A--RPFIINKQEFVLGASLGIAFFPDDGNTPQEMLKNADTAMYFAKNNGGNSYQFFSGEM 1242

Query: 263  NNTC 266
            N   
Sbjct: 1243 NQNA 1246


>gi|322805533|emb|CBZ03098.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Clostridium botulinum H04402 065]
          Length = 419

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 90/182 (49%), Gaps = 11/182 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
             + E  I  ++  Q++  D L+ L N ++F+  L             L+I+F D+D FK
Sbjct: 240 RDITERKIYNDKTKQMAYFDSLTELPNRNSFLKQLEHEIKLSKKKQSLLAIMFLDLDKFK 299

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
           ++NDNFGH  GDK++  ++ ++     +   + R GG+EF       + E++   LA D+
Sbjct: 300 EVNDNFGHCTGDKLLWQVAKRVKNTISSKDLIARFGGDEFTILIRNIAYEKQVEDLAMDI 359

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            ++ +  +     G  ++I  S GI+           +I +AD+A+Y AKK G N+   +
Sbjct: 360 IEVFK--EPICIEGIYVNIKTSIGISFFPKDGHTSQELIKKADKAMYDAKKRGSNKFQIY 417

Query: 259 SD 260
            D
Sbjct: 418 KD 419


>gi|319428399|gb|ADV56473.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella putrefaciens 200]
          Length = 1077

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 11/186 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + +       +   +  D L+GL N   F   L          + KL+I+  D+D FK 
Sbjct: 619 DISKRKQYEQDLWYQANFDSLTGLPNRKLFNERLQHEIQLAQHDSRKLAILLIDLDQFKY 678

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLR 200
           IND  GH  GD ++  ++ +L  + G   F+ R+GG+EF       + + A   +A  + 
Sbjct: 679 INDVQGHATGDLLLQDVARRLESIGGQNDFIARIGGDEFVLILPRLTNELAIEHMATRII 738

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +        +   I I+ S GI         +S++    + A+Y AK +GRN    F+
Sbjct: 739 ETLAT--PFSLNEREIQISASFGIGVYPEDGLDVSSLTRNTEMAMYQAKDAGRNNFKYFT 796

Query: 260 DIENNT 265
              N  
Sbjct: 797 SGMNQA 802


>gi|299068645|emb|CBJ39881.1| putative signal transduction eal-ggdef domains transmembrane
           protein [Ralstonia solanacearum CMR15]
          Length = 1178

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 22/187 (11%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQ 141
            + E  ++  R++Q + +D L+GL N +                  +  +   +ID FK 
Sbjct: 737 DVTEQEMTRARLAQHATVDPLTGLPNRTLLADRVQQGVEMAARQRSRFYVALINIDRFKV 796

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA----AILAN 197
           +ND+ GH +GD+V+  ++++L     T   V R GG+ FA     +          + A 
Sbjct: 797 VNDSLGHLLGDEVLRRIAERLRDAADTVDTVARFGGDVFALVISHAGSHGTDLGFDLFAE 856

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +R            G  + +T S G+AE   H     T++  A+ A+Y AK++GRNR+ 
Sbjct: 857 PIR----------VEGHEVFVTASIGVAEYPAHGSDSETLVRHAEMAMYFAKQNGRNRLE 906

Query: 257 CFSDIEN 263
            F+   +
Sbjct: 907 FFAPEMD 913


>gi|294339813|emb|CAZ88176.1| putative GGDEF family protein, diguanylate cyclase domain
           [Thiomonas sp. 3As]
          Length = 546

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 8/176 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQI 142
           ++ L     ++SQ  + D L+G LN            S +    + L++   D+D+FK +
Sbjct: 346 IRSLEGELEQVSQQLQEDPLTGALNRRGLDAEFTRMQSRVVRQGQPLTLALLDLDHFKAV 405

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD V+  L  Q   +      V R+GGEEF      +  Q++ ++   L   
Sbjct: 406 NDTHGHDTGDAVLKALVAQAKRLIRPSDRVARMGGEEFMLLLPDTPVQQSLVVVQRLLVA 465

Query: 203 IENSQ-INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +   +  S+G  I ++ SAG+AE C  E  + I  R D AL  AK++GR RV  
Sbjct: 466 FSDQTLVQDSTGRRIPLSFSAGVAELCPDEDFAAIYQRVDAALLQAKQAGRKRVEF 521


>gi|284052160|ref|ZP_06382370.1| diguanylate cyclase [Arthrospira platensis str. Paraca]
          Length = 349

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 97/231 (41%), Gaps = 16/231 (6%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
           I+  +L  IG+       Y+L  +L  V  S    +     S   +++L      +S L 
Sbjct: 115 ISAYYLESIGIIKSLNNHYLLACDLYRVYFSYK-PIFPQVPSSIYIEQLERDNQYLSNLV 173

Query: 105 RIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            +D L+ + N S F  +     E        L+++  DIDYFK  ND FGH  GD  +  
Sbjct: 174 YVDELTKVANRSQFQKAFKMEWECMAIKHNPLALIVCDIDYFKLYNDTFGHLAGDVCLQK 233

Query: 158 LSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
           ++  +          + R GGEEF      +  + A  +A  +   ++   I      S+
Sbjct: 234 VAQAIQHNLQRPNDLLARYGGEEFVVLLPQTDGKGAMFVAAKICLAVKELAIASGVPKSV 293

Query: 217 H-----ITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFSD 260
                 +TIS GIA           T+   ADQALY +KK+GR+R    S+
Sbjct: 294 DSQHPVVTISIGIASIIPSSDYHPETLFMAADQALYESKKAGRDRYTMSSE 344


>gi|302865940|ref|YP_003834577.1| diguanylate cyclase [Micromonospora aurantiaca ATCC 27029]
 gi|302568799|gb|ADL45001.1| diguanylate cyclase [Micromonospora aurantiaca ATCC 27029]
          Length = 716

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 12/187 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQI 142
            + + +    R+   +  D L+GL N + F  +LG         +++ + F D+D FK +
Sbjct: 269 DITQRYELQQRLRFQALHDPLTGLPNRTLFFETLGDVFDGAGPEQRVGLCFIDLDGFKAV 328

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAAL-GSSEQEAAILANDLR 200
           ND+ GH +GD+++  ++ +L     G    V R+GG+EF           +A  +A    
Sbjct: 329 NDSLGHDLGDRLLKVIARRLSDCVAGRGHLVARMGGDEFVILVDSDGGIDDAVEVAELAL 388

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259
             +  S         + ++ S GI E    E  +  ++  AD  LY AK  GR R   + 
Sbjct: 389 AAV--SAPVHVGDQQLAVSASIGIVECPAAETSVGDLMKAADTTLYWAKAEGRGRWAVY- 445

Query: 260 DIENNTC 266
           D E +  
Sbjct: 446 DPERSAA 452


>gi|239994057|ref|ZP_04714581.1| putative diguanylate cyclase/phosphodiesterase domain 2 (EAL)
           [Alteromonas macleodii ATCC 27126]
          Length = 627

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 64/270 (23%), Positives = 113/270 (41%), Gaps = 32/270 (11%)

Query: 25  HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYIL----VENLSLVIISITISL 80
           +  +I F+            ++ + L  I LT     + +     + + S V+  + I +
Sbjct: 102 YPGVIIFAALLGGIALFGTVLSLVLLQCITLTWLIMHDVVTPNPPILSWSHVLFIMVIYV 161

Query: 81  LLGY---ISGSILKELFISYNR-----------ISQLSRIDCLSGLLNH----SAFISSL 122
           + G+   I    ++ L  S  +           I  L+  D L+ L N       F   L
Sbjct: 162 ITGFSVFILIQDIRRLMQSLQQEVSKVEQNRAHIQHLAHHDPLTNLPNRILGERLFNEKL 221

Query: 123 GSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
               EK   L+++F D+D FK +ND  GH  GD+ +  +S  +     T   + R GG+E
Sbjct: 222 RESEEKGLQLALLFIDLDNFKPVNDALGHAAGDRFLQKISQTITDHLSTKQSLIRFGGDE 281

Query: 180 FAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTII 237
           F   A   S++ E   L  +L     N +  +     + ++ S G+A+  +       + 
Sbjct: 282 FIVLAPEISDKSEIDDLCKNLITWCSN-EFEVLQTKVV-VSGSIGVAQAPYDGIKFKQLC 339

Query: 238 YRADQALYVAKKSGRNRVVCFS---DIENN 264
            +AD A+Y AK++GRNR   +    D EN+
Sbjct: 340 RKADIAMYEAKRNGRNRYEYYDVRFDEEND 369


>gi|237731655|ref|ZP_04562136.1| diguanylate cyclase/phosphodiesterase [Citrobacter sp. 30_2]
 gi|226907194|gb|EEH93112.1| diguanylate cyclase/phosphodiesterase [Citrobacter sp. 30_2]
          Length = 705

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 100/218 (45%), Gaps = 11/218 (5%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE-LFISYNRISQLSRIDCLSGL 112
           GL+      ++    L ++ I + +S++   +  S L + L     ++      D L+GL
Sbjct: 210 GLSTLELSVWVCAVTLVILGIMLVVSMVDSQLRTSRLADNLHQLNCQLEHQVHFDALTGL 269

Query: 113 LNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N +   + L +       +  + ++VF D+D FK +ND +GH +GD+++   + ++   
Sbjct: 270 ANRTQIDACLQACLQHSKLHQHQFALVFIDLDRFKVVNDTWGHHIGDQLLIASTQRIYSC 329

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
               M + RLGG+EF       ++++   L   +   I         G +I +++SAG +
Sbjct: 330 LDDTMTLARLGGDEFILLVPDCNKEDITALLTRIAAAI--GDPFTLFGYTIRVSLSAGSS 387

Query: 226 ERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
               H   +  +  +AD A+Y  K++GRN    +S   
Sbjct: 388 IYPEHGSTLHELKVKADMAMYHVKQAGRNGWAIYSPEM 425


>gi|84687739|ref|ZP_01015611.1| two component diguanylate cyclase [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664240|gb|EAQ10732.1| two component diguanylate cyclase [Rhodobacterales bacterium
           HTCC2654]
          Length = 456

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 10/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDN 145
                +++ + +  D L+GL N       L              +++  D+D+FK +ND 
Sbjct: 277 RARVEDQLDE-ALRDPLTGLFNRRYADGYLARMQKEHGATRRSCAMLLLDLDHFKSVNDR 335

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGH  GD V+   + +L         V R+GGEEF      ++  EA + A  LR  + +
Sbjct: 336 FGHLAGDDVLVETARRLKATLREIDLVARIGGEEFLVVLRDTTGDEARLTAERLRAAVAD 395

Query: 206 SQINISSGPS-IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           + ++   G + I +T+S G+A   +       +  +AD+ALYV+K  GRN V C
Sbjct: 396 TPVDARDGQTPISVTLSIGMALCSNSISNPRELWDQADRALYVSKAGGRNIVTC 449


>gi|323699258|ref|ZP_08111170.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio sp. ND132]
 gi|323459190|gb|EGB15055.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio desulfuricans ND132]
          Length = 826

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 12/192 (6%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDI 136
           +S   + +      ++   +  D L+ L N +  +  LG    +         ++VF D+
Sbjct: 356 LSFRDITDRKTMEEQLRHQALHDPLTNLANRTLCLDRLGQAMRRAKRRENYFFAVVFLDL 415

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FK IND+ GH  GD V+A  + +L         V R GG+EF       SS  EA  +
Sbjct: 416 DRFKIINDSLGHRFGDMVLAETAIRLSGEMRGLDTVSRFGGDEFVLLLDELSSPGEAIRI 475

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
              +R+ +  S+    +G  +  T S GI            ++  A+ A++ AK++GRNR
Sbjct: 476 IKRVRERL--SEPFRFNGNEVQTTASFGIVLSPVVDGKAPDVLQHANIAMHRAKEAGRNR 533

Query: 255 VVCFSDIENNTC 266
              F++    T 
Sbjct: 534 FKVFTERMLETA 545


>gi|225376815|ref|ZP_03754036.1| hypothetical protein ROSEINA2194_02457 [Roseburia inulinivorans DSM
           16841]
 gi|225211311|gb|EEG93665.1| hypothetical protein ROSEINA2194_02457 [Roseburia inulinivorans DSM
           16841]
          Length = 704

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 12/195 (6%)

Query: 72  VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS- 130
           + I + +S+ L  +   IL         I  +S  D L+GL N  A    +    ++   
Sbjct: 510 IAIILAVSMTLLSLLLGILLIHSRKTKEIRIMSETDALTGLYNRRAAEDHITRQMQEDGR 569

Query: 131 -------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                  ++  D+D FKQ+ND +GH  GD ++  ++D L     +   VGR+GG+EF   
Sbjct: 570 NPGCVRPLISIDLDKFKQVNDTYGHLEGDALLIAVADTLRTSVRSSDIVGRIGGDEFVVY 629

Query: 184 ALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRAD 241
               +  Q A  +A  L ++I   +++       +I+ S GI+   H    +  +   AD
Sbjct: 630 LSNVTDRQNAMAVAEKLCQVIR--ELSTMKKEWSNISASIGISFADHPNIKMEELYISAD 687

Query: 242 QALYVAKKSGRNRVV 256
           +A+Y AK++GRN+  
Sbjct: 688 KAMYSAKENGRNQYQ 702


>gi|192292005|ref|YP_001992610.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           TIE-1]
 gi|192285754|gb|ACF02135.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           TIE-1]
          Length = 656

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 103/246 (41%), Gaps = 16/246 (6%)

Query: 29  IYFSIFFSIFIAT-----VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           +  +  F I ++      ++ +  +FL ++      G E     +    + +  ++  L 
Sbjct: 149 VMAATLFRIMMSGDSSDYIVALDGVFLTFMLFRAAIGGEREFTASQMTALEATDLANSLA 208

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFK 140
             +  +L     S   + Q++R D L+GL N S F  +        + ++ V FD+D FK
Sbjct: 209 SANNEVLN----SNRALEQIARADPLTGLANRSHFRDAAADACRSGQGVAFVLFDVDNFK 264

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
            +ND  GH  GD+VIA ++D L    G      RLGG+EF     G      A  LA  L
Sbjct: 265 IVNDTRGHDAGDRVIAAVADLLRSSCGPHDLPVRLGGDEFIVVLKGDDVAARALSLARRL 324

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
              +  ++     G  + IT S GIA        +  +  RAD ALY AK  GR  +  F
Sbjct: 325 SGAL--TRPLQVLGQPLAITCSIGIAAHPGGPIDVEDVFSRADAALYRAKDDGRACIRLF 382

Query: 259 SDIENN 264
                 
Sbjct: 383 DARMQE 388


>gi|160896183|ref|YP_001561765.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Delftia acidovorans SPH-1]
 gi|160361767|gb|ABX33380.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Delftia acidovorans SPH-1]
          Length = 881

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 12/186 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           + +  +      + +++  D L+GL N    I  L             L++ F D+D FK
Sbjct: 423 TDISHIKAHEAELERVTHYDLLTGLPNRRLLIDRLNQAMLRTAREGRSLAVCFLDLDGFK 482

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND  G   GD ++  ++  L  V  +   + RLGG+EF           A   A  L 
Sbjct: 483 EINDLHGAAAGDALLVGVAAHLKSVLRSEDTLARLGGDEFVLLLSHIGS--AEHCATILD 540

Query: 201 KIIENSQINIS-SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           +++E +   +      + +T S G++     +     ++  ADQA+ VAK++GRNR   F
Sbjct: 541 RVLEAASRPVPVQDRVLSVTASLGVSLYPDDQADPDLLLRHADQAMCVAKQAGRNRYQLF 600

Query: 259 SDIENN 264
            D EN+
Sbjct: 601 -DPEND 605


>gi|170727890|ref|YP_001761916.1| diguanylate cyclase/phosphodiesterase [Shewanella woodyi ATCC
           51908]
 gi|169813237|gb|ACA87821.1| diguanylate cyclase/phosphodiesterase [Shewanella woodyi ATCC
           51908]
          Length = 677

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139
             IL +   + +++ +++  D L+GL N +  +            +  + S+VF D+D F
Sbjct: 231 NQILIQFSQTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRARVHKNQFSMVFIDLDRF 290

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K +ND+ GH +GDK +A ++  L  V G    V RLGG+EF   A    +  +AA   ++
Sbjct: 291 KNVNDSLGHALGDKFLARIARVLERVVGDKGTVARLGGDEFVILADEIQTPDQAADFVDN 350

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           L  +I+ +     +  +IH   S GI+           +I  AD A+Y AK +G N+   
Sbjct: 351 L--LIQLNTPMQLNEHTIHPAASVGISIYPDDGMTAEDLIRHADIAMYSAKAAGSNQWAF 408

Query: 258 FSDIENNTC 266
           F        
Sbjct: 409 FKQQMTERA 417


>gi|24372790|ref|NP_716832.1| GGDEF domain-containing protein [Shewanella oneidensis MR-1]
 gi|24346875|gb|AAN54277.1|AE015564_8 GGDEF domain protein [Shewanella oneidensis MR-1]
          Length = 684

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
             IL +   + +++ +++  D L+GL N +  + ++         +    +++F D+D F
Sbjct: 232 NQILIQFSQTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRSRVHKRSFALMFIDLDRF 291

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND+ GH +GD+ +A ++  L  V G    V RLGG+EF   A    S  +AA   + 
Sbjct: 292 KNINDSLGHALGDQFLARIARILERVVGDKGSVSRLGGDEFVILADSVHSPDQAADFVDK 351

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L  +++ +     +  +IH   S GI+           +I  AD A+Y AK +G N+   
Sbjct: 352 L--LVQLNVPIQLNEHAIHPAASIGISIYPEDGSSAEDLIRHADIAMYSAKAAGSNQWAF 409

Query: 258 FSDIENNTC 266
           F        
Sbjct: 410 FKQQMTERA 418


>gi|153821501|ref|ZP_01974168.1| GGDEF family protein [Vibrio cholerae B33]
 gi|254849413|ref|ZP_05238763.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|126520994|gb|EAZ78217.1| GGDEF family protein [Vibrio cholerae B33]
 gi|254845118|gb|EET23532.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
          Length = 428

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 105/241 (43%), Gaps = 16/241 (6%)

Query: 33  IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS----LVIISITISLLLGYISGS 88
           I   +F + V+++ N+++    + P      +L +  +    +   S  IS  +   + +
Sbjct: 184 ILALLFFSLVMYLVNLWVVIALIKPITTASQVLQQFKTSGGKMPDASTFISSEMKEFATT 243

Query: 89  ILK---ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           I +   +L  S   +   S  D L+ + N       L SY        L +   DID+FK
Sbjct: 244 INRIVGQLEDSQQVLRWQSEHDPLTRISNRRHLEKQLKSYLSDRPQAYLVLFLVDIDFFK 303

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199
           + ND+FGH  GD+ +  ++D L  V       V R GGEEF          +A   A  +
Sbjct: 304 RFNDSFGHLAGDEALCSVADVLQSVEFHGEKIVARFGGEEFCVVLASDCAFDAEQYAQQM 363

Query: 200 RKIIENSQI-NISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R  IE   I N       ++T+S G   A     E   ++ ++AD ALY AK+ GR+R V
Sbjct: 364 RSKIEQLAIANPVDALCQYLTVSIGGVYAISPKMESYLSLFHQADMALYHAKEHGRDRYV 423

Query: 257 C 257
            
Sbjct: 424 V 424


>gi|309701300|emb|CBJ00601.1| predicted diguanylate cyclase [Escherichia coli ETEC H10407]
          Length = 449

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 22/258 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LV 66
            + +WL        F+   + I+  +    F A +  I+ +F+    ++ +Y    I +V
Sbjct: 199 MIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVV 258

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             L++++I +            I   L ++ N    ++  D L+ + N + F + L    
Sbjct: 259 SKLTVMVIFMC----------HIFSALRVTKN----IAHRDPLTNIFNRNYFFNELTVQS 304

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +      ++  DID+FK++ND +GHPVGD+VI  + + +         + R+GGEEF 
Sbjct: 305 ASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFG 364

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYR 239
                   + A  LA  +R+ +E    +         +TIS G +  + +    + I   
Sbjct: 365 VLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRL 424

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK++GRN+VV 
Sbjct: 425 ADNALYEAKETGRNKVVV 442


>gi|237730352|ref|ZP_04560833.1| diguanylate cyclase AdrA [Citrobacter sp. 30_2]
 gi|226905891|gb|EEH91809.1| diguanylate cyclase AdrA [Citrobacter sp. 30_2]
          Length = 366

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 104/227 (45%), Gaps = 11/227 (4%)

Query: 37  IFIATVIFIANIFLFYIGLTPF-YGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95
           +FIA  + +    L  + LT          +  L  + + +   LL  ++S   L  L  
Sbjct: 137 VFIAGAVLMVVSCLVTLQLTDIPVAFSSTQLSVLLSLPVLVVYPLLFAWVSYQTLIRLAE 196

Query: 96  SYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGH 148
              R+  +S  D ++G+ N   +         +   +    +++  DID+FK IND +GH
Sbjct: 197 HKRRLQVMSTRDGMTGVYNRRHWELLLRNEFDNCRRHQRDATLLIIDIDHFKSINDTWGH 256

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            VGD+ I  L+ QL +       +GR GG+EFA    G+S   A    + + + +  +Q+
Sbjct: 257 DVGDQAIVALTRQLQMTLRGSDVIGRFGGDEFAVIMCGTSASSAIAAMSRVHERL--TQL 314

Query: 209 NISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNR 254
            +S  P + + IS G+A      E     +  AD ALY AK SGRNR
Sbjct: 315 RLSCAPQVDLRISVGVAPLTSETEHYREWLKSADMALYKAKNSGRNR 361


>gi|226952586|ref|ZP_03823050.1| GGDEF domain-containing protein [Acinetobacter sp. ATCC 27244]
 gi|226836666|gb|EEH69049.1| GGDEF domain-containing protein [Acinetobacter sp. ATCC 27244]
          Length = 425

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 69/250 (27%), Positives = 111/250 (44%), Gaps = 22/250 (8%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL----------G 83
              + I T   I  +F  Y+     Y L  I    +  +++  +IS++L           
Sbjct: 171 LHMLIIGTCAAIVILFFLYL-FDVSYDLLMIGRTFIGSILLGFSISVMLTSKERRIFIKS 229

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDI 136
            IS    K L +  + +  LS+ D L+ + N   F               + L+++F DI
Sbjct: 230 KISEIDEKILRLQASELLHLSQHDDLTNVSNRRTFEEMCIYYYDLACQEQKPLAVLFIDI 289

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           DYFK  ND +GH +GD  I+ ++  +        F+ R GGEEF      +  Q A  +A
Sbjct: 290 DYFKNYNDFYGHQMGDHAISEIAKTIKGSIRHMDFIARYGGEEFVVLLPETPAQGAYAVA 349

Query: 197 NDLRKIIENSQINISSG-PSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRN 253
            ++ + I+   I  +    S H+TIS GI        IS   +I  AD+ALY AK+ GRN
Sbjct: 350 TNIYRAIDRLMIPHAKSLVSNHVTISLGITVFNGNRAISQELLIDTADKALYRAKQLGRN 409

Query: 254 RVVCFSDIEN 263
           ++  +  + N
Sbjct: 410 QI-YYQPLPN 418


>gi|223984843|ref|ZP_03634951.1| hypothetical protein HOLDEFILI_02250 [Holdemania filiformis DSM
           12042]
 gi|223963182|gb|EEF67586.1| hypothetical protein HOLDEFILI_02250 [Holdemania filiformis DSM
           12042]
          Length = 543

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 8/181 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQ 141
           YI   I ++  +   +I   S  D L+GL N   F   L      +++S+++ D+DYFK 
Sbjct: 350 YIFRDITRQRQM-EQQILYNSNTDFLTGLYNRRHFYEYLAQNRGQQRVSLIYADLDYFKL 408

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLR 200
           +ND  GH  GD+ +   +  L   F    F+ RLGG+EF    LG+ +  E    +    
Sbjct: 409 LNDTQGHQAGDEALVLTAVLLKQCF-PDAFLTRLGGDEFLILYLGNWALTELTARSQTFL 467

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +E    + S  PS+  T S GIA+    +  +  ++ R+DQALY AK+ GRN+V  + 
Sbjct: 468 RKMEEQFRSRSIHPSL--TASIGIAQTDDPQLSVDKLMQRSDQALYQAKQQGRNQVRVYG 525

Query: 260 D 260
           +
Sbjct: 526 E 526


>gi|188991601|ref|YP_001903611.1| Putative sensor protein [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167733361|emb|CAP51562.1| Putative sensor protein [Xanthomonas campestris pv. campestris]
          Length = 696

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 105/271 (38%), Gaps = 20/271 (7%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIF---IATVIFIANIFLFYIGLTPFYGLEY----IL 65
           L H+    S      MI       +    +A   F         G+     L +    + 
Sbjct: 162 LRHDGRRYSLRVVAAMIMGVAIVGMHYTGMAAAQFAPGSICGAAGINAQLPLSWLASVVA 221

Query: 66  VENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAF---- 118
              L L+ +++ IS+L          + + L  +   +   +  D L+ L N        
Sbjct: 222 AVTLGLLGLALVISVLSRRFQQRTDVLAQSLAQANQELVLAALHDPLTRLPNRVLLHEHV 281

Query: 119 ---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
              I       ++ +++  D+D FK +ND +GH +GD+++  ++ +L         + RL
Sbjct: 282 LQSIERGQRDGQRFAVMLIDLDGFKAVNDGYGHQLGDQLLIAVAQRLGAHRRAHGSLARL 341

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS- 234
           G +EF   A  +  ++AA +A  L + +      +     + ++ S GIA          
Sbjct: 342 GADEFVLVADIADPEDAAAIAGHLVQALAL--PFLVGDHELRLSSSVGIALYPEDAGSEH 399

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
            ++  AD A+  AK++GRNR   F      T
Sbjct: 400 QLMTHADAAMGHAKQAGRNRYSFFDRSMTGT 430


>gi|124515772|gb|EAY57281.1| Diguanylate cyclase/phosphodiesterase with GAF sensor
           [Leptospirillum rubarum]
 gi|206602277|gb|EDZ38759.1| Diguanylate cyclase/phosphodiesterase with GAF sensor
           [Leptospirillum sp. Group II '5-way CG']
          Length = 988

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 84/213 (39%), Gaps = 23/213 (10%)

Query: 56  TPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH 115
           +P   L  ILVENLS  I +                         + LS  D L+ L N 
Sbjct: 378 SPLVDLINILVENLSFAIDNRDREEERLRREAE-----------YTHLSLFDSLTDLPNR 426

Query: 116 SAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168
             F       I       E   +   D+D FK +ND  GHP GD+++  ++++L  +  +
Sbjct: 427 RLFQDRTAQAIERYRRKREPFVLGILDLDGFKFVNDRLGHPAGDRLLILVAERLKAILRS 486

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIA-E 226
              + RLGG+EF     G      + L + +   I +  I  S    SI I+ S G    
Sbjct: 487 TDTLARLGGDEFGLLLAGVEGSGGSDLFDRI---IHSLSIPFSHEKESISISGSIGFTVV 543

Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                   T+   AD ALY  K+ G+N    FS
Sbjct: 544 PPDDADAETLFKHADIALYQVKEHGKNGWQAFS 576


>gi|13474053|ref|NP_105621.1| hypothetical protein mll4839 [Mesorhizobium loti MAFF303099]
 gi|14024805|dbj|BAB51407.1| mll4839 [Mesorhizobium loti MAFF303099]
          Length = 253

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 94/166 (56%), Gaps = 3/166 (1%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+S+ +  D ++G+LN  +F ++L      +++ +++  D D+FK+IND+FGH  GD  +
Sbjct: 84  RLSEKASRDDMTGMLNRESFFAALDGSRRKSDRGALLIIDADHFKKINDSFGHLTGDDAL 143

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  +     +   +GR+GGEEF A  +G++EQEA  +A  +R+ +E  +       +
Sbjct: 144 LLIASAIERGVRSGDVLGRIGGEEFGAFLVGATEQEAKRVAERIRREVELIRFRPVDERT 203

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           I +T+S G         +S ++  AD+ LY AK  GRN  +  +DI
Sbjct: 204 IPLTVSIGGTVCGEDVNVSELMRAADRRLYQAKHRGRNLTILDTDI 249


>gi|327478666|gb|AEA81976.1| two-component response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 546

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 59/170 (34%), Positives = 80/170 (47%), Gaps = 10/170 (5%)

Query: 98  NRISQLSR---IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFG 147
            R   LS     D L+GLL H+     L           +  S+V  D+D+FKQ+ND +G
Sbjct: 374 QRARSLSTALARDSLTGLLKHADIKEQLALEVQRSSRSGKPASVVMLDLDHFKQVNDTYG 433

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD VI  L++ L         +GR GGEEF A     S  +A  + +++R       
Sbjct: 434 HAAGDNVIRALANLLRQRLRRIDSLGRYGGEEFVAVLPECSALQARRIFDEIRVRFAALT 493

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            N        +T SAGI E       S ++ RADQALY+AK  GRN+V  
Sbjct: 494 FNAGDHQEFRVTFSAGICETDEHSAASVLLERADQALYLAKHQGRNQVQV 543


>gi|294624998|ref|ZP_06703649.1| two-component system response regulator [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600720|gb|EFF44806.1| two-component system response regulator [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 432

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 9/168 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+GL N   F+             ++ ++    DID+FK IND +GH  GD
Sbjct: 266 LQDLATRDFLTGLPNRRYFLEQSQRVIPKLLLEDQTVTAAMVDIDHFKHINDTWGHEAGD 325

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  ++  +         V R GGEEF     G     A      LR+ I   ++ +  
Sbjct: 326 QALRAVAASVSGHARPQDLVARFGGEEFCLLVPGLDAANATSYFETLRERISALRVRVGD 385

Query: 213 GPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++ +T+S G+       + +  ++  AD+ LY+AK  GRN+V   S
Sbjct: 386 -ETLSMTVSIGVCIASESDQSLHYLLNEADKHLYLAKAGGRNQVRLAS 432


>gi|120600723|ref|YP_965297.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sp. W3-18-1]
 gi|120560816|gb|ABM26743.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. W3-18-1]
          Length = 1077

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 11/186 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + +       +   +  D L+GL N   F   L          + KL+I+  D+D FK 
Sbjct: 619 DISKRKQYEQDLWYQANFDSLTGLPNRKLFNERLQHEIQLAQHDSRKLAILLIDLDQFKY 678

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLR 200
           IND  GH  GD ++  ++ +L  + G   F+ R+GG+EF       + + A   +A  + 
Sbjct: 679 INDVQGHATGDLLLQDVAKRLESIGGQNDFIARIGGDEFVLILPRLTNELAIEHMATRII 738

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +        +   I I+ S GI         +S++    + A+Y AK +GRN    F+
Sbjct: 739 ETLAT--PFSLNEREIQISASFGIGVYPEDGLDVSSLTRNTEMAMYQAKDAGRNNFKYFT 796

Query: 260 DIENNT 265
              N  
Sbjct: 797 SGMNQA 802


>gi|320332848|ref|YP_004169559.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
 gi|319754137|gb|ADV65894.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
          Length = 810

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 9/175 (5%)

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153
            R++  ++ D L+GLLN +AF  +L +     +  L ++F D+D+FKQ+ND  GHPVGD 
Sbjct: 380 ERLAYQAQHDALTGLLNRAAFEGALQAAVQGPDTTLGVLFIDLDHFKQVNDTLGHPVGDA 439

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISS 212
           ++  ++++L V       V R GG+EF        +  +    A  +   +      +  
Sbjct: 440 LLIQVAERLSVCVRDGDLVARQGGDEFTVLLRNVQAHADVEAAAQRILDALSAPMDLV-- 497

Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
           G ++ +T S GIA   H    ++T+   AD A+Y AK+  R+ V  F  +  +  
Sbjct: 498 GRALVVTASIGIALFPHDGTDVTTLQKHADLAMYHAKRDRRS-VRRFQPVLGDAA 551


>gi|302530275|ref|ZP_07282617.1| conserved hypothetical protein [Streptomyces sp. AA4]
 gi|302439170|gb|EFL10986.1| conserved hypothetical protein [Streptomyces sp. AA4]
          Length = 559

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 10/186 (5%)

Query: 82  LGYISGSILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYN-----EKLSIVFFD 135
           +  ++     E   + +  I+Q +  D L+GL N  A    L +       + L++   D
Sbjct: 353 IATLNARREHERLSAEHGAITQQALQDPLTGLPNRRALDERLRALASSADAQPLAVALVD 412

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D FK +ND   H  GD V+  ++  L         V R GG+EF     G+    A + 
Sbjct: 413 LDGFKGVNDKQSHAEGDNVLRVVASTLRDALRGDDVVARYGGDEFIVLLPGAPASAAKMA 472

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                K +     ++S G    +T+S G+     +E    ++ RAD A+Y AK+ G N+V
Sbjct: 473 LGRAAKSVATLPHHLSHG----VTLSIGLVSLRPQERAEQVLARADAAMYEAKRGGGNQV 528

Query: 256 VCFSDI 261
              + +
Sbjct: 529 ASANSM 534


>gi|170759024|ref|YP_001786604.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169406013|gb|ACA54424.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 419

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 90/182 (49%), Gaps = 11/182 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
             + E  I  ++  Q++  D L+ L N ++F+  L             L+I+F D+D FK
Sbjct: 240 RDITERKIYNDKTKQMAYFDSLTELPNRNSFLKQLEHEIKLSRKKQNLLAIMFLDLDKFK 299

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
           ++NDNFGH  GDK++  ++ ++     +   + R GG+EF       + E++   LA D+
Sbjct: 300 EVNDNFGHCTGDKLLWQVAKRVKNTISSKDLIARFGGDEFTILIRNIAHEKQVEDLARDI 359

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            ++ +  +     G  ++I  S GI+           +I +AD+A+Y AKK G N+   +
Sbjct: 360 IEVFK--EPICIEGIYVNIKTSIGISFFPKDGHTSQELIKKADKAMYDAKKRGSNKFQIY 417

Query: 259 SD 260
            D
Sbjct: 418 KD 419


>gi|126651299|ref|ZP_01723506.1| hypothetical protein BB14905_12055 [Bacillus sp. B14905]
 gi|126591828|gb|EAZ85911.1| hypothetical protein BB14905_12055 [Bacillus sp. B14905]
          Length = 505

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 103/219 (47%), Gaps = 11/219 (5%)

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCL 109
           + Y+  T F  +E  L +N     + + I+L+  ++   ++ ++    ++   L+  D L
Sbjct: 283 IVYVKYTNFTKMEA-LQKNTKQFWVLLVIALVTAFVMLLVINKIL---SKTIHLATFDPL 338

Query: 110 SGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           +G+ N + +I  +          +  ++  D+D FKQ+ND FGH  GD ++   +  L  
Sbjct: 339 TGVYNRATYIRKMDSLLKKRKINRPGLLLIDLDNFKQVNDQFGHAEGDHILIGTAKILKK 398

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI-TISAG 223
           V     FV R GG+EFA     ++E     LA+ +   I   +          + ++S G
Sbjct: 399 VVKKDGFVVRFGGDEFAIVLYDTTEHHMQQLADAILAQIRTLKFEGQDIEKWSVLSVSMG 458

Query: 224 IAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261
            A   H E    ++  RADQALY +K +G+++   +++ 
Sbjct: 459 GAIYHHPEDSEMSLFERADQALYQSKNAGKDQYSSYAEA 497


>gi|119486186|ref|ZP_01620246.1| PleD-like protein [Lyngbya sp. PCC 8106]
 gi|119456677|gb|EAW37806.1| PleD-like protein [Lyngbya sp. PCC 8106]
          Length = 698

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 13/195 (6%)

Query: 78  ISLLLGYISGSILKELFISYN--RISQLSRIDCLSGLLNHSAFI-------SSLGSYNEK 128
           + +++  IS     E+ +      + +L+  D L+ + N   F          L    + 
Sbjct: 504 VLMMIRDISDRKQSEIKLQQANFTLEKLAHTDGLTQIANRRYFDDYLIKEWQRLRREKQY 563

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGS 187
           LS++  DIDYFK  ND +GH  GDK +  ++  +          V R GGEEF      +
Sbjct: 564 LSLILLDIDYFKFYNDFYGHQSGDKSLISIAQAIKKTLKRPADLVARYGGEEFVVVLPNT 623

Query: 188 SEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIA--ERCHKEPISTIIYRADQAL 244
           +++    +A  ++++I    I       S  IT+S GIA      K   + +I +AD+ L
Sbjct: 624 NQKGVINIAQQIQQMIRTLAIVHQKSQVSNIITLSQGIACTIPNSKTSPAQLIAQADKVL 683

Query: 245 YVAKKSGRNRVVCFS 259
           Y AK+ GRNR +  S
Sbjct: 684 YTAKQQGRNRYIVSS 698


>gi|37680156|ref|NP_934765.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37198902|dbj|BAC94736.1| GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 371

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 9/173 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI-------VFFDIDYFKQIN 143
           ++L  +  ++  LS  D L+ L N    I +L      +S+       +  D DYFKQ+N
Sbjct: 193 RQLVEANKQLEVLSYTDALTQLPNRRCAIQTLKELWNDVSLADAPLVCIMIDADYFKQVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GD V+  L+  L   F +   V RLGG+EF      +       +A  +R+ +
Sbjct: 253 DSCGHEAGDVVLKELAHTLKHSFRSDDIVCRLGGDEFLVICPNTDLAGGLHVAELVRQQV 312

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
            N  I     P    +IS G+AER       + +I  AD ++Y +K  G+N V
Sbjct: 313 NNLLIPTGLEPWRG-SISVGVAERTPAMNTYTELIQFADDSVYRSKHHGKNCV 364


>gi|86148607|ref|ZP_01066890.1| c-di-GMP phosphodiesterase A-related protein [Vibrio sp. MED222]
 gi|218710435|ref|YP_002418056.1| c-di-GMP phosphodiesterase A-like protein [Vibrio splendidus LGP32]
 gi|85833598|gb|EAQ51773.1| c-di-GMP phosphodiesterase A-related protein [Vibrio sp. MED222]
 gi|218323454|emb|CAV19631.1| c-di-GMP phosphodiesterase A-related protein [Vibrio splendidus
           LGP32]
          Length = 679

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 92/202 (45%), Gaps = 10/202 (4%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-- 127
           S VI+  +  L+L   +    K+   +    S+ + ID L+ L N   F  SL  +    
Sbjct: 222 STVILGSSTQLVLIQDAQETTKQYTPAN---SEDAYIDTLTKLYNRLGFTKSLEQFIHNK 278

Query: 128 -KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             + +++ DID FK IND+ GH +GDKVI  ++ +L         +G LGG+EF      
Sbjct: 279 TPVVMLYLDIDNFKNINDSLGHHIGDKVIKEVASRLKRQLPRQAIIGHLGGDEFGIILPE 338

Query: 187 -SSEQEAAILANDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQAL 244
               +   IL+  +  +I  +Q       S  +  S G ++          ++  AD A+
Sbjct: 339 PEHPRTPEILSEKIISLI--NQPFDLHHFSKRLACSIGSVSFPHDGSDARILLQNADTAM 396

Query: 245 YVAKKSGRNRVVCFSDIENNTC 266
           Y AK  GRNR++ F++  N   
Sbjct: 397 YEAKDRGRNRLIKFNEQMNKEA 418


>gi|95928352|ref|ZP_01311100.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
 gi|95135623|gb|EAT17274.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684]
          Length = 311

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 64/192 (33%), Positives = 86/192 (44%), Gaps = 13/192 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEK 128
           I   L +       +K L      +SQ    D L+GL N  AF        +     +  
Sbjct: 104 IAARLKIAVAGKREIKRLSQDKQSMSQTMMEDSLTGLCNRKAFDRAIQVELARFKRQSIP 163

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
             +V  DIDYFK++ND++GH VGD V+  +S+++           R GGEEFA    G +
Sbjct: 164 FGLVILDIDYFKRVNDSYGHQVGDHVLKAVSNRIAGSLRELDIPCRYGGEEFAVILPGLT 223

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAG-----IAERCHKEPISTIIYRADQA 243
             EA   A  +R +IE    N   GP   +T+S G     I E         +I  AD A
Sbjct: 224 ATEAYAAAERVRNLIETIPANELQGPP-QVTVSLGVCSTHIVEDRQNVTAEQLIEWADLA 282

Query: 244 LYVAKKSGRNRV 255
           LY AK  GRNRV
Sbjct: 283 LYEAKHQGRNRV 294


>gi|91223235|ref|ZP_01258501.1| ScrC (sensory box/GGDEF family protein) (involved in swarmer cell
           regulation) [Vibrio alginolyticus 12G01]
 gi|91192048|gb|EAS78311.1| ScrC (sensory box/GGDEF family protein) (involved in swarmer cell
           regulation) [Vibrio alginolyticus 12G01]
          Length = 776

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 81/184 (44%), Gaps = 11/184 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           ++    S   ++  ++ D L+ L N S     L            K+ ++F D+D+FKQI
Sbjct: 335 IERRKASEKELAFQAKYDTLTNLPNRSYGSERLALELIRASRSGSKVLVMFIDLDHFKQI 394

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRK 201
           ND+ GH VGD+++   + +L  V      + R+GG+EF            A  +A+ +  
Sbjct: 395 NDSMGHFVGDEILKLSAQRLYQVARKTDLLARIGGDEFLLVIPDLPDNDTAKRVASSVLS 454

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              +    + +     ++ S G++      +    ++  AD A+Y AK+ GR+    ++ 
Sbjct: 455 AFND--PFVWNNHEFFLSSSVGMSVFPDDGDNAEQLLACADMAMYRAKQDGRDGFCFYNH 512

Query: 261 IENN 264
             N 
Sbjct: 513 NMNQ 516


>gi|90021368|ref|YP_527195.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89950968|gb|ABD80983.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 325

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 78/163 (47%), Gaps = 8/163 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           S  D L+G+ N  A  +           +   LS++  D+D+FK++ND +GH  GDK++ 
Sbjct: 143 SMRDPLTGIGNRQAMDNCFAREIKLSLRHQTPLSLMLIDVDFFKKLNDTYGHRAGDKMLK 202

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            +   +         + R GGEEF      +  + A + A  +R     + + I  G ++
Sbjct: 203 HIVTNIKNSLRETDQIFRFGGEEFVVLLHNTDAENARLTAERIRIHSAITPMEI-DGENV 261

Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             TIS G+      + + +   RAD ALY AKK GRN+VV  S
Sbjct: 262 ASTISLGVTTLIDTDNVESFFERADCALYQAKKEGRNKVVVES 304


>gi|326316035|ref|YP_004233707.1| response regulator receiver modulated diguanylate cyclase
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372871|gb|ADX45140.1| response regulator receiver modulated diguanylate cyclase
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 334

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 12/186 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           +EL ++  R++++  +D L+GL+N   F   L             L+++  D+D+FK+ N
Sbjct: 144 EELHLANQRLNEMVEVDTLTGLVNRRGFDRILHSEILAARRDGMPLTLMLCDLDHFKRFN 203

Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D  GH  GD  +  +   L            R GGEEFA     +    A   A  L K+
Sbjct: 204 DAVGHVQGDACLREVGRLLKEVCVRPRDVAARYGGEEFALILPNTPRSGAMTFARALGKL 263

Query: 203 IENSQINISSGP-SIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFS 259
           +    I     P    +T+S GI      +      ++ RAD+ALY AK  GR R   F 
Sbjct: 264 VSQRAIAHPDSPLGASLTVSGGITTCVPDDSTSAEAMLMRADEALYAAKAQGRARFFSF- 322

Query: 260 DIENNT 265
           +++ +T
Sbjct: 323 EMQMDT 328


>gi|145298286|ref|YP_001141127.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851058|gb|ABO89379.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 529

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 66/209 (31%), Positives = 91/209 (43%), Gaps = 11/209 (5%)

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCL 109
           L  I   P   L   L    SL  +     ++   +S    + L     ++  LS  D L
Sbjct: 315 LTLIHRIPLTALTQALF-WHSLPSLITIFFMMWAALSSLKARRL---NRQLDYLSSHDAL 370

Query: 110 SGLLNHSAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           +G  N   F       L +   ++ +V FD D+FKQ+ND FGH VGD+V+  L      +
Sbjct: 371 TGTYNRHYFDEFERLHLRAKAREVGVVMFDCDHFKQVNDRFGHEVGDQVLIRLVTLCQPL 430

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                 + R GGEEF   A G   +    LA  LR  I        + P + +TIS G  
Sbjct: 431 LKKEDALIRWGGEEFLLLARG--REPLEQLAERLRLQIAEHPWEEIA-PDLAVTISLGYH 487

Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNR 254
                 P+   I+RAD ALY AK +GRNR
Sbjct: 488 HCRAGTPLKEAIHRADLALYQAKANGRNR 516


>gi|13470925|ref|NP_102494.1| hypothetical protein mlr0754 [Mesorhizobium loti MAFF303099]
 gi|14021668|dbj|BAB48280.1| mlr0754 [Mesorhizobium loti MAFF303099]
          Length = 428

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 67/260 (25%), Positives = 111/260 (42%), Gaps = 12/260 (4%)

Query: 5   LKDFLSIWLCHEKNLESFSPH----TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60
            ++  +  L      E +          I  +  +S    + +  A + L + G      
Sbjct: 167 FENLFAALLLFATAFEYWRGRDEAPALTIGITTLYSATAVSFMLCAAV-LAWDGRLVLGH 225

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
                 E LSL+++  +++  +G +S ++ +     ++R  + +  D L+GLLN  A   
Sbjct: 226 APSNWAEELSLIVVIASMTG-IGALSLALNQGRLARHHR--RNALTDPLTGLLNRRALFD 282

Query: 121 SLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178
             G        ++V FD+D FK IND FGH  GD+V+   + +L           R+GGE
Sbjct: 283 MHGHVPVGAFTAVVVFDLDNFKAINDEFGHAAGDEVLKVFARELAGNLRQTDIAARMGGE 342

Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTII 237
           EFA     +  +     A  +R       I   +G S+  T+SAG A           ++
Sbjct: 343 EFALVLKRTLPETVEDAAERIRTAFATRLIETETG-SLRCTVSAGFAFGSKEGLSFDKVL 401

Query: 238 YRADQALYVAKKSGRNRVVC 257
             AD+ALY AK+ GRNRV  
Sbjct: 402 SAADKALYDAKRGGRNRVTA 421


>gi|323938128|gb|EGB34390.1| GGDEF domain-containing protein [Escherichia coli E1520]
          Length = 473

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 22/258 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LV 66
            + +WL        F+   + I+  +    F A +  I+ +F+    ++ +Y    I +V
Sbjct: 223 MIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVV 282

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             L++++I +            I   L ++ N    ++  D L+ + N + F + L    
Sbjct: 283 SKLTVMVIFMC----------HIFSALRVTKN----IAHRDPLTNIFNRNYFFNELTVQS 328

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +      ++  DID+FK++ND +GHPVGD+VI  + + +         + R+GGEEF 
Sbjct: 329 ASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFG 388

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYR 239
                   + A  LA  +R+ +E    +         +TIS G +  + +    + I   
Sbjct: 389 VLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRL 448

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK++GRN+VV 
Sbjct: 449 ADNALYEAKETGRNKVVV 466


>gi|221211969|ref|ZP_03584947.1| diguanylate cyclase [Burkholderia multivorans CGD1]
 gi|221168054|gb|EEE00523.1| diguanylate cyclase [Burkholderia multivorans CGD1]
          Length = 525

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 61/190 (32%), Positives = 93/190 (48%), Gaps = 12/190 (6%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNE----KLSIVFFD 135
           ++    L++      R++ L+R D L+GL N  A  + L              LS++F D
Sbjct: 327 WLLAFALRDNLRKQQRLTDLARTDPLTGLHNRRALDAMLVDACARLQRGDGGSLSVLFID 386

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
            D FKQ ND +GH  GD  + FL+  +   V        R GGEEF A    +  + A  
Sbjct: 387 ADRFKQYNDRYGHAHGDTALRFLAACIRAHVCRRGDVAARYGGEEFVAVLPDTDARGAMQ 446

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGR 252
           +A+ +R+ +E ++++  + P    T+S G A   H        +  RAD+ALY AK  GR
Sbjct: 447 IADAIRRDVERNRLDGFADPVPAFTVSIGCATADHARAASADALARRADRALYTAKHRGR 506

Query: 253 NRVVCFSDIE 262
           NRV C +D+E
Sbjct: 507 NRV-CHADVE 515


>gi|149924030|ref|ZP_01912413.1| FHA domain/GGDEF domain protein [Plesiocystis pacifica SIR-1]
 gi|149815113|gb|EDM74666.1| FHA domain/GGDEF domain protein [Plesiocystis pacifica SIR-1]
          Length = 294

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 8/168 (4%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149
           +  +  L+  D L+G+ N  +F S+L            +L++  FDID+FK+ ND +GH 
Sbjct: 127 HEHVYSLTHFDSLTGVHNRPSFDSALANSVAKAARAQSQLALFLFDIDHFKRCNDTYGHR 186

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD V++ +   +        F  R GGEEFA    G         A+ +R ++E  +  
Sbjct: 187 AGDYVLSQVGRLVGEHMRAGDFAARYGGEEFALILRGLVPPAPTRFADHIRNLVEVQRFE 246

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              G  I +TIS G+AE       + ++  ADQ LY AK++GRN ++ 
Sbjct: 247 F-EGKHIPVTISGGVAEWEPGMVGAQLVELADQRLYRAKQAGRNCIIA 293


>gi|104780999|ref|YP_607497.1| sensory box-containing diguanylate cyclase [Pseudomonas entomophila
           L48]
 gi|95109986|emb|CAK14691.1| putative sensory box-containing diguanylate cyclase [Pseudomonas
           entomophila L48]
          Length = 562

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 9/179 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + E     + +      D L+GL N +     L          +  L++   D+D FK 
Sbjct: 113 DVTEKRQLLHTLQWRVGHDVLTGLPNRAYLSDLLNQALAFSRREHIPLAVCMLDLDGFKA 172

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH  GD ++  ++ +L  +      V RL G+EF        E    + A   R 
Sbjct: 173 VNDGYGHATGDLLLVEVAQRLQGILRGGDAVARLSGDEFVLILRHI-EGPRQLHAALQRV 231

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++  +   +     + ++ S G+       E   T++  ADQA+YVAK+ GRNR   F 
Sbjct: 232 LLALAAPYVVRDHVLTLSASIGVTLFPQDDEDADTLVRHADQAMYVAKQRGRNRYHLFD 290


>gi|89091871|ref|ZP_01164826.1| hypothetical protein MED92_06886 [Oceanospirillum sp. MED92]
 gi|89083606|gb|EAR62823.1| hypothetical protein MED92_06886 [Oceanospirillum sp. MED92]
          Length = 992

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 85/193 (44%), Gaps = 11/193 (5%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVF 133
           L   +S   +         I   ++ D L+ + N           I +   ++ KL+++F
Sbjct: 543 LFIVLSIRDISRYKEQEEHILYQAQFDLLTHIPNRFLAKDRAEQAIRNADKHDGKLALMF 602

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEA 192
            D+D FK++ND+ GH VGD+++   + + V        + R GG+EF           ++
Sbjct: 603 IDLDGFKKVNDSMGHEVGDQLLQQATRRFVSCIEKQHTLARHGGDEFIIIQEDIADPTDS 662

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSG 251
            I+A  + +   N   +I +   I +T S GI+         S ++  AD  +Y AK  G
Sbjct: 663 EIVAEKILQQFSN-PFSIENKQLI-VTASIGISIYPDDANNYSDLLRAADIGMYKAKHDG 720

Query: 252 RNRVVCFSDIENN 264
           RNR   ++   N+
Sbjct: 721 RNRFHYYTQEMND 733


>gi|296285042|ref|ZP_06863040.1| diguanylate cyclase [Citromicrobium bathyomarinum JL354]
          Length = 394

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 104/238 (43%), Gaps = 16/238 (6%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
             SI  +     VI I  I    +      G    +   +SL +  +    ++      +
Sbjct: 146 MASIRAAALTHLVIDIGAIATLML----LTGSTLDIATAVSLCVAGVFQWRMINAHHNQV 201

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQINDNF 146
           + EL +   +  QL+  D L+GLLN  A +       E+     ++  DID FK IND  
Sbjct: 202 I-ELLMLERKSQQLALTDPLTGLLNRRALLDFAEGLGEQSGQSRLLLIDIDCFKVINDTH 260

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH VGD V+  ++  +    G  +   RLGGEEFA   LG+SE      A  L   I  +
Sbjct: 261 GHDVGDTVLQEVARLIQAHAGDGVSAARLGGEEFA--LLGTSEALPPGKAMQLLAEIREA 318

Query: 207 QINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           ++          TIS G+AE           + +RAD+ALY AK  GR+R V   ++E
Sbjct: 319 EMPHGG----QCTISIGVAEGALSDDSTWRELYHRADKALYAAKSQGRDRTVHEHELE 372


>gi|294664741|ref|ZP_06730070.1| GGDEF family protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292605495|gb|EFF48817.1| GGDEF family protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 955

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 8/172 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           +EL  +   ++  +  D L+GLLN S  + ++             L++V  D+D+FKQ+N
Sbjct: 775 RELENARAALALKASHDALTGLLNRSGILEAMAEELQGCAHGEHPLAVVLIDLDHFKQVN 834

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH VGD V+A +  +L         VGR GGEE      G S+Q    L   + + +
Sbjct: 835 DEHGHLVGDAVLAKVGARLTACLRDSDKVGRYGGEELLLLLPGMSQQSQHRL-RAIHEAL 893

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +   + +   + +T S G++     +  ++++ RAD+ALY AK+SGRNR+
Sbjct: 894 SLAPYEVGAARPLQVTCSVGVSWFRVGDTAASLLARADEALYRAKRSGRNRI 945


>gi|295700626|ref|YP_003608519.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1002]
 gi|295439839|gb|ADG19008.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1002]
          Length = 689

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 10/189 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138
           +G I   L  S  R+   ++ D L+ L N       L        +  + +S++F D+D 
Sbjct: 231 NGRIGAHLRRSLKRLEHQAKYDALTELPNRVLLGEHLSESLVRAAATGQNVSVLFLDLDR 290

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND+ GH VGD ++  ++ +L  +     FV R GG+EF   A  +  ++   + + 
Sbjct: 291 FKDVNDSLGHRVGDLLLQAVARRLQRLLRATDFVARYGGDEFVIIAERADVKQLTEMLDT 350

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII-YRADQALYVAKKSGRNRVVC 257
           L  I E S+        +++  S G++          ++   AD ALYVAK  GRN    
Sbjct: 351 L--IHEMSEPYRIGEHELYLEASIGVSTYPQDGAQPELLTRNADAALYVAKSRGRNGYQF 408

Query: 258 FSDIENNTC 266
           +    +   
Sbjct: 409 YEPELSRAA 417


>gi|152998354|ref|YP_001343189.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Marinomonas sp. MWYL1]
 gi|150839278|gb|ABR73254.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinomonas sp. MWYL1]
          Length = 804

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 16/193 (8%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDY 138
           S   + +  +   ++  L+  D L+ L N      ++               ++F D+D 
Sbjct: 345 SFRDITQRKLDQEQVKFLAYYDALTNLPNRRFLNQNIEKVITTAQNNGYIGGLLFIDLDR 404

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL--GSSEQEAA--- 193
           FK IND+ GH VGD ++   S +++          R+GG+EF       G + +EA    
Sbjct: 405 FKNINDSMGHHVGDALLVEASKRILACLSQADIAVRMGGDEFVLLIPVLGDNAEEAQSRV 464

Query: 194 -ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
            +LA  L   +   Q+       + I+ S GI+         + I+ +AD A+Y AK+SG
Sbjct: 465 TLLAETLLSQL--CQVFRLEQTDLFISASIGISLFPFDGANDAQILRQADTAMYEAKESG 522

Query: 252 RNRVVCFSDIENN 264
           RN    +      
Sbjct: 523 RNAYRFYRQEMQQ 535


>gi|46198754|ref|YP_004421.1| putative response regulator [Thermus thermophilus HB27]
 gi|46196377|gb|AAS80794.1| putative response regulator [Thermus thermophilus HB27]
          Length = 229

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 19/176 (10%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           +EL+       + +    L+GL N  A   +L              ++V  D+D FK++N
Sbjct: 61  RELYGQVRFWRERALTCPLTGLPNRRALEMALEREAARVERGGPPFALVLVDLDGFKRVN 120

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+ +  ++  LV        V R GG+EFA   LG+ E+EA  +A  L + +
Sbjct: 121 DEGGHREGDRYLRRVARALVSGVRRGDLVARWGGDEFAVLLLGTGEKEAVEVAERLGRRL 180

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +             ++ S G+A       +  +  RADQALY AK  G+ RVV  S
Sbjct: 181 QEE----------GVSASLGVAVYAG--DLEDLFLRADQALYRAKALGKGRVVLAS 224


>gi|330503952|ref|YP_004380821.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328918238|gb|AEB59069.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 386

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 105/242 (43%), Gaps = 15/242 (6%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS 86
           F++   +  ++  + V+ +A +   +    P       LV N+  +     I  +  Y+ 
Sbjct: 149 FLVGLRLSGALACSLVVLLAYVLAEWFAGLPVPR----LVNNVLFLAFGNLIGAVGCYLL 204

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYF 139
               +E F+    +  L+  D L+GL N  +F         +       L+++  DID+F
Sbjct: 205 EYKSREHFLISRLMRLLAYHDSLTGLHNRRSFNRQFERLWRQAQRDGKSLALLLCDIDHF 264

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILAND 198
           K  ND +GH  GD  +  +   +      P     RLGGEEFA         EA   A  
Sbjct: 265 KAYNDCYGHQAGDVALQRVGALIEQAARRPLDIGVRLGGEEFALLLFDIGADEARQRAEA 324

Query: 199 LRKIIENSQINISSGPSIH-ITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255
           LR+ +E + I      S   +T+S G+A  C +    +S +  +AD+ALY AK  GRN+V
Sbjct: 325 LRQSLEEAGIAHRGSDSGDMLTMSIGVACLCPETQPELSQLYEQADRALYEAKAFGRNQV 384

Query: 256 VC 257
             
Sbjct: 385 AA 386


>gi|209546562|ref|YP_002278480.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537806|gb|ACI57740.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 788

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 49/206 (23%), Positives = 90/206 (43%), Gaps = 11/206 (5%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------IS 120
           +++ ++I++  S LL  +  S L EL  S     QL+  D L+ L N + F       ++
Sbjct: 295 SIAALVIAVLFSFLLVRLRSS-LGELKKSELHARQLALHDVLTDLPNRALFAMRFDECLA 353

Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
              + +E+ ++   D+D FK +ND FGH  GD++I   ++++  +      + RLGG+EF
Sbjct: 354 ETRNSSERSAVALLDLDRFKAVNDTFGHAAGDELIRMAAERIRAILRPGDTLARLGGDEF 413

Query: 181 AAAALGSSEQEAA--ILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTII 237
           A       + +     +   +   +      +       +  S G+            I+
Sbjct: 414 ALLLRDIKDHDQVLPAICEAIVAELGKPFPLLHGEAVARVGGSIGVTVVPDAGRNADDIM 473

Query: 238 YRADQALYVAKKSGRNRVVCFSDIEN 263
             AD ALY AK  GR +   +S   +
Sbjct: 474 RYADVALYEAKMGGRGQWRLYSPSMD 499


>gi|50086545|ref|YP_048055.1| putative diguanylate cyclase/phosphodiesterase [Acinetobacter sp.
           ADP1]
 gi|49532519|emb|CAG70233.1| conserved hypothetical protein; putative diguanylate
           cyclase/phosphodiesterase [Acinetobacter sp. ADP1]
          Length = 676

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 13/208 (6%)

Query: 70  SLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG----- 123
           ++V +     LL  YIS  + + +L  S +    ++  D L+GL N       L      
Sbjct: 218 TIVPLKDNDGLLKNYISIRTDITQLKSSEDHAKYMALYDELTGLPNRRYVKDRLKKVIEL 277

Query: 124 --SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                   +I+  D+D FK +ND  GH  GD ++  +++++         + RLGG+E  
Sbjct: 278 SKESQHHSAILMMDLDNFKTVNDTLGHDYGDNLLKMVANRVKKCVRETETIARLGGDELL 337

Query: 182 AAALGSSEQ----EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTI 236
                 SE     +A   A   R      Q        I  ++S GI        P + +
Sbjct: 338 IILSNLSENEEIAQAQAQAIAERISNSIYQPFNLENQVIQTSVSIGIFVFNDASIPQNEL 397

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENN 264
           +  AD ALY AK +G+N +  F  +   
Sbjct: 398 LKYADMALYQAKANGKNCICTFDPLMEQ 425


>gi|329903344|ref|ZP_08273437.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327548422|gb|EGF33100.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 1035

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 12/188 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNH----SAFISSL---GSYNEKLSIVFFDIDYF 139
            SI  E   +  RI +L+  D L+GL N          +L     +  ++ ++F D+D F
Sbjct: 589 ASITIESRYAEQRIRRLAHYDELTGLPNRVLCGQQLDKALLHAQRHGRQVGVLFIDLDRF 648

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILAND 198
           K IN+ FGH  GD V+  +S + +        + R GG+EF     G  +  E   +A  
Sbjct: 649 KNINETFGHDAGDTVLREVSLRFLDTLRPSDLIARAGGDEFIVLVDGYDDPLELGDIARH 708

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L ++   S+    +G    +  S GIA           ++  AD A++ AK  G+N V  
Sbjct: 709 LLQV--ASRPFAIAGQECQLGASIGIASFPQDGHSAQVLLKNADIAMHRAKDVGKNNVQY 766

Query: 258 FSDIENNT 265
           +S I+ +T
Sbjct: 767 YS-IDMHT 773


>gi|323497617|ref|ZP_08102634.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
 gi|323317366|gb|EGA70360.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
          Length = 427

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 12/176 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
           + KEL       ++L+  D L+G +N  A    L          ++ LS+++ DID+FK 
Sbjct: 255 LNKELKEQNIHFAELASRDALTGAMNRHAIRDWLDKNYDETNKLSKTLSVLYLDIDHFKS 314

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH +GD ++   +  ++        + R GGEEF     G   +EA+ LA  +R+
Sbjct: 315 INDLYGHSMGDDILREFTMVVLSSLSASERLVRWGGEEFVVFCPGRGLEEASELAEQIRR 374

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +E             +T S G+A    +     +I RAD+ALY AK+ GRNRV  
Sbjct: 375 KVEARIWIHGD----KLTTSIGVATLGEERTSDMLI-RADEALYSAKRLGRNRVEV 425


>gi|24215630|ref|NP_713111.1| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
 gi|24196789|gb|AAN50129.1| GGDEF family protein [Leptospira interrogans serovar Lai str.
           56601]
          Length = 313

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 21/183 (11%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQ 141
           +  EL  + N + + +  D L+ L N  AF + L    +        +S++  D D+FK 
Sbjct: 124 LATELKEANNMLLEQASTDPLTKLKNRRAFNAELNRLLQIAQKQSNPISLLMIDADHFKD 183

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            ND FGHP GD+V+  L+  L         + R GGEEF  A   +SE  +  +A  L  
Sbjct: 184 YNDKFGHPAGDQVLIDLAFLLTHTLRQHDVIARYGGEEFIVAMPDTSEVASLQIAERLIH 243

Query: 202 IIENSQINISSGPSIHITISAGIAERC---HKEPIST------IIYRADQALYVAKKSGR 252
           ++   + N    P   +TIS G A       K  +        +I  AD+ALY +K +GR
Sbjct: 244 VV--GEFNWEKRP---VTISIGAATLPGEKQKTSLEENRHFINLIESADKALYHSKINGR 298

Query: 253 NRV 255
           N+V
Sbjct: 299 NQV 301


>gi|89092689|ref|ZP_01165642.1| methyl-accepting chemotaxis protein-like [Oceanospirillum sp.
           MED92]
 gi|89083201|gb|EAR62420.1| methyl-accepting chemotaxis protein-like [Oceanospirillum sp.
           MED92]
          Length = 385

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 61/202 (30%), Positives = 99/202 (49%), Gaps = 18/202 (8%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS--- 120
           I +++  L+  ++ I  ++  +          S + I  ++  D L+ L           
Sbjct: 189 IFIQSAELIAAAVLIMTIISVVMA------KRSTSTIRNMAIRDPLTQLYTRRYLNESED 242

Query: 121 ---SLGSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                 + N+   L IVF DID+FKQ+ND +GH VGD+V++ + + L           R 
Sbjct: 243 SFVREDNRNQFNHLYIVFLDIDFFKQVNDTYGHMVGDQVLSKVGEVLRTHTRAQDLCVRY 302

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235
           GGEEF    L +S++    L   LRK     ++  + G    IT+SAGIA R   E  + 
Sbjct: 303 GGEEFVVMTLANSDEPVLKLTERLRK--HTHELTFAEGQ--QITLSAGIARREVDESFAH 358

Query: 236 IIYRADQALYVAKKSGRNRVVC 257
           ++ RADQ LY AK++GR+R++ 
Sbjct: 359 VLQRADQNLYEAKQTGRDRIIF 380


>gi|89094288|ref|ZP_01167230.1| sensory box protein [Oceanospirillum sp. MED92]
 gi|89081543|gb|EAR60773.1| sensory box protein [Oceanospirillum sp. MED92]
          Length = 539

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 9/155 (5%)

Query: 104 SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156
           +  D L+GL N   F S L            +L +++ D+D FK +ND  GH +GDK + 
Sbjct: 375 AYQDALTGLPNRRLFFSRLESAISRAERQLSQLGVLYIDLDNFKPVNDQHGHLIGDKALR 434

Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
            ++ +L   F T   + RLGG+EF A        +A+ +A  + + + N  + +S     
Sbjct: 435 EIAKRLQNSFRTSDTLARLGGDEFIALVDIDKRDQASSIALKVSECL-NQPMQLSPDIET 493

Query: 217 HITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
            ++ S GI+           +I++AD+A+Y AK++
Sbjct: 494 SLSASIGISIFPGDGANAEELIHKADEAMYKAKRA 528


>gi|312197661|ref|YP_004017722.1| diguanylate cyclase [Frankia sp. EuI1c]
 gi|311228997|gb|ADP81852.1| diguanylate cyclase [Frankia sp. EuI1c]
          Length = 544

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 108/259 (41%), Gaps = 25/259 (9%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           P    ++ ++ +++  A  +             P   +E   +  +SL+++++   ++  
Sbjct: 292 PRAMWLHAALPYAVLCAAGLLTLGKLATG---APLDRVEAYGM--VSLLVLALARQMITI 346

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------------YNEKL 129
             +  +L  L    +++   +  D L+GL N + F   L                 +  L
Sbjct: 347 AENTHLLAALRERESQLHYQAFHDPLTGLANRALFTRRLQRAVGAEPGRDGASGCRDGPL 406

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           S++F D+D+FK++ND FGH  GD+++   + +L         V RLGG+EF        +
Sbjct: 407 SVLFVDLDHFKRVNDAFGHAAGDELLRISAARLRGATRAVDTVARLGGDEFGVILDSRGD 466

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYV 246
                +A  L    E       +G +     S G+             T++++AD A+Y 
Sbjct: 467 DNPRHVAERL--ATEVQAPCRLAGRTYVPRASLGLVTLDGAARPPDPDTLLHQADLAMYA 524

Query: 247 AKKSGRNRVVCF-SDIENN 264
           AK+    R+V + SD+ + 
Sbjct: 525 AKRERAGRLVVYGSDLPDR 543


>gi|254457966|ref|ZP_05071393.1| response regulator PleD [Campylobacterales bacterium GD 1]
 gi|207085359|gb|EDZ62644.1| response regulator PleD [Campylobacterales bacterium GD 1]
          Length = 423

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 76/164 (46%), Gaps = 12/164 (7%)

Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
              +  D L+ + N +         I +    N   + V  DIDYFK +NDN+GH +GD 
Sbjct: 262 EHEASYDSLTNIYNRTKLNNLFTIQIETAKVNNNTFAFVMLDIDYFKAVNDNYGHLIGDA 321

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  ++D +           R GGEEF         ++A  +AN LR  IE  +      
Sbjct: 322 VLIQMTDLIKKHIRDSDIFARWGGEEFVLLLPHVGLKKAEEIANYLRTKIEADKFPEID- 380

Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               IT S G+      + I +II RAD ALY AK +GRN +VC
Sbjct: 381 ---SITCSFGVTCYKDGDNIDSIIKRADSALYDAKDAGRN-IVC 420


>gi|323704500|ref|ZP_08116078.1| diguanylate cyclase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535962|gb|EGB25735.1| diguanylate cyclase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 297

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 67/216 (31%), Positives = 101/216 (46%), Gaps = 13/216 (6%)

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCL 109
           L+ +  TPFY     +V  L   +   T + L+  I     + ++   N +++L   D L
Sbjct: 87  LYLVTSTPFYTDSGKIVVEL---LKDSTDAGLIEDIKNLTSQNIYDKVNELNELVVKDGL 143

Query: 110 SGLLNHSAFISSL------GSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           +GL N       L       S N   +SI+  DID+FK++ND +GH  GD+ + F +  +
Sbjct: 144 TGLYNRRFVDERLPVDILRASLNTMPVSIIMADIDFFKKVNDTYGHIAGDETLKFFASII 203

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                   +  R GGEEF      + + EA  +A  +RK IE+S I I     I IT S 
Sbjct: 204 QSNIRKDDWAARYGGEEFLICLKNTDKNEAYEIAERIRKSIESSTI-IYKDKEIKITSSF 262

Query: 223 GIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           G+       E    +I + DQ LY AKK  RN+V+ 
Sbjct: 263 GVYTFEGNYENYLDVIEKTDQKLYEAKKK-RNQVMA 297


>gi|315635908|ref|ZP_07891170.1| diguanylate cyclase [Arcobacter butzleri JV22]
 gi|315479887|gb|EFU70558.1| diguanylate cyclase [Arcobacter butzleri JV22]
          Length = 619

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 82/177 (46%), Gaps = 9/177 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + E  +  + + + + +D L+GL N       +            K +I+F DIDYFK I
Sbjct: 431 ILESKLLMDALREKNLVDGLTGLYNRRYLDEFIEKKLPHESQDGSKFAIMFLDIDYFKMI 490

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD ++  LSD +        F+ R GGEEF       +E  A  LA  + + 
Sbjct: 491 NDTYGHDAGDAILQKLSDTMKASISENEFIVRFGGEEFLIIMKNPTESSARELATKINQE 550

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
                 N  +G +   T+S G +        I   I  AD +LY AK++GRN++V F
Sbjct: 551 FAKLVFNY-NGQAFSKTVSIGYSFFPDDADQIWKCIKYADISLYEAKETGRNKIVRF 606


>gi|157736733|ref|YP_001489416.1| GGDEF domain-containing protein [Arcobacter butzleri RM4018]
 gi|157698587|gb|ABV66747.1| GGDEF domain protein [Arcobacter butzleri RM4018]
          Length = 619

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 82/177 (46%), Gaps = 9/177 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           + E  +  + + + + +D L+GL N       +            K +I+F DIDYFK I
Sbjct: 431 ILESKLLMDALREKNLVDGLTGLYNRRYLDEFIEKKLPHESQDGSKFAIMFLDIDYFKMI 490

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND +GH  GD ++  LSD +        F+ R GGEEF       +E  A  LA  + + 
Sbjct: 491 NDTYGHDAGDAILQKLSDTMKASISENEFIVRFGGEEFLIIMKNPTESSARELATKINQE 550

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258
                 N  +G +   T+S G +        I   I  AD +LY AK++GRN++V F
Sbjct: 551 FAKLVFNY-NGQAFSKTVSIGYSFFPDDADQIWKCIKYADISLYEAKETGRNKIVRF 606


>gi|158320221|ref|YP_001512728.1| diguanylate cyclase [Alkaliphilus oremlandii OhILAs]
 gi|158140420|gb|ABW18732.1| diguanylate cyclase [Alkaliphilus oremlandii OhILAs]
          Length = 1822

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 11/175 (6%)

Query: 93   LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
            + ++   ++ +S ID ++G      F       I      N+ LSI+  DID+FK +ND 
Sbjct: 1467 ILLTNRNLAMISNIDRMTGAYTRKYFEQIFDEEIEQAKESNQPLSIIMLDIDHFKNVNDI 1526

Query: 146  FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            +GH  GD ++  +   +     +   VGR GGEEF      +S  +A  +A  +R  +++
Sbjct: 1527 YGHQKGDNILTEVGRIIKSNIRSTDHVGRYGGEEFVIILPNTSNMDAFHVAEKIRLKVQS 1586

Query: 206  SQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFS 259
            + +    G +  +TIS GI+           II +ADQALY AK++GRNR V + 
Sbjct: 1587 TNL---LGKAEVLTISCGISTFPIDSNKQLQIIEKADQALYHAKENGRNRSVRWD 1638


>gi|313109834|ref|ZP_07795769.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|310882271|gb|EFQ40865.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 542

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 56/161 (34%), Positives = 83/161 (51%), Gaps = 10/161 (6%)

Query: 106 IDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
            D L+GL NH+  +                LS    DID+FKQ+ND FGHP+GD+VI  L
Sbjct: 379 RDSLTGLYNHTHTLQLLEDARLRARRDGRPLSFAMLDIDHFKQVNDRFGHPMGDRVIKGL 438

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IH 217
           +  L         +GR GGEEFA     +    A ++ +++R+     +I+  + P+ + 
Sbjct: 439 ALFLKQRLRKTDHIGRYGGEEFAVVLPDTDLDAARLVLDEIRQRFA--EIHYPAQPTDLR 496

Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            T S GIAE      I ++  +AD+ALY AK  GRNR+  +
Sbjct: 497 CTFSCGIAELTPDLDIKSMAKQADEALYRAKHGGRNRIEVY 537


>gi|315498706|ref|YP_004087510.1| diguanylate cyclase/phosphodiesterase with pas/pac and gaf
           sensor(s) [Asticcacaulis excentricus CB 48]
 gi|315416718|gb|ADU13359.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Asticcacaulis excentricus CB 48]
          Length = 763

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 15/219 (6%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112
           IG   FY     ++      I+ I   L       ++  E      RI  L+  D L+GL
Sbjct: 279 IGTFAFYSTRPFVLNTFVQSIVDICTQLC------TLAFEKDAFQARIQYLAHHDSLTGL 332

Query: 113 LNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N   + + L            +L++   D+D FK++ND  GH VGD+V+  +++ L  +
Sbjct: 333 PNRGFYQTRLAEEAARATRQKTQLALHLIDLDRFKEVNDTMGHMVGDEVLITVAETLRDL 392

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                 + RLGG+EF    +G +++ +A   A  L K ++          +  +  S G 
Sbjct: 393 ASPDDVLARLGGDEFVFLQVGVTQRAQAEAKAEALVKALQAEMHAQFGPQAPDVGASLGF 452

Query: 225 AERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           A        +  +   AD ALY AK  GR     F    
Sbjct: 453 ALYPDEGPTLDRLTRHADMALYKAKTDGRGCWRAFDATM 491


>gi|311696781|gb|ADP99654.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [marine bacterium HP15]
          Length = 785

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 9/174 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           +      R+S  +  D L+ LLN  AF +SL       G  + +  ++  D+DYFK +ND
Sbjct: 606 DRRRQEERLSWEATHDSLTQLLNRRAFNASLVRSLGEAGRQDARSVLMLIDLDYFKPVND 665

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH +GD ++  L+D           V RLGG+EF           A  LA  +R  +E
Sbjct: 666 EGGHLLGDDLLKRLADLFKDAVRQSDTVARLGGDEFGIILPACGMTRAEALAERIRADVE 725

Query: 205 NSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
             +I    G S  +T S G+ E   ++     ++ RAD+  Y+AK  GRNRVV 
Sbjct: 726 ALRIEH-DGRSFGVTTSIGLTELTAEDSGPREVMARADEGSYIAKSRGRNRVVV 778


>gi|307300411|ref|ZP_07580191.1| diguanylate cyclase [Sinorhizobium meliloti BL225C]
 gi|307318276|ref|ZP_07597711.1| diguanylate cyclase [Sinorhizobium meliloti AK83]
 gi|306895958|gb|EFN26709.1| diguanylate cyclase [Sinorhizobium meliloti AK83]
 gi|306904577|gb|EFN35161.1| diguanylate cyclase [Sinorhizobium meliloti BL225C]
          Length = 316

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 59/217 (27%), Positives = 97/217 (44%), Gaps = 16/217 (7%)

Query: 54  GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ-------LSRI 106
           G  PF  +E  L +   L +                + ++     ++ Q        S++
Sbjct: 83  GKVPFRTVETDLHDGRWLWMTETVDQKGWMLCIAVDITDVRAGERKLRQDRDFALRASQV 142

Query: 107 DCLSGLLNHSAFISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHPVGDKVIAFL 158
           D L+ + N    +  L  +    +        +   DIDYFK IND +GH  GD+V+   
Sbjct: 143 DELTSVPNRRYTMERLNEFIRNCAENPHMWGCVAIIDIDYFKAINDRYGHHRGDEVLLDF 202

Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218
           + Q+          GR+GGEEF      ++  EA ++ + L   I N++  +S+ P    
Sbjct: 203 ARQMQEFVRRSDCFGRIGGEEFMLILPDTTVGEANLILDRLLDKIRNAR-PLSNIPEFFY 261

Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           T S G+AE    + +  I  RAD+ALY+AK+ GR+RV
Sbjct: 262 TCSVGLAEYREGDSVGDIYSRADEALYIAKREGRDRV 298


>gi|290509246|ref|ZP_06548617.1| diguanylate cyclase (GGDEF) domain-containing protein [Klebsiella
           sp. 1_1_55]
 gi|289778640|gb|EFD86637.1| diguanylate cyclase (GGDEF) domain-containing protein [Klebsiella
           sp. 1_1_55]
          Length = 453

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 84/162 (51%), Gaps = 11/162 (6%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           S  D L+ L N S F  +L            LS++  D+D+FK+INDN+GH  GDKVI F
Sbjct: 291 SIRDPLTRLYNRSFFYDTLNQQLAKVNPQHPLSVIISDLDHFKRINDNYGHVAGDKVIQF 350

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
            +  L           R+GGEEFA   + ++E++A  +A  +R  +   Q ++       
Sbjct: 351 AASVLENHSRVDDAAARIGGEEFALLLVNTAEKDALAIAERIRLAVNAEQNHLPE----R 406

Query: 218 ITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +TIS G+   R       T + RAD A+Y AK SGRNRVV +
Sbjct: 407 MTISMGLYTTRDRSVNAETCVERADAAMYEAKNSGRNRVVVW 448


>gi|289662906|ref|ZP_06484487.1| hypothetical protein XcampvN_07423 [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 517

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 77/179 (43%), Gaps = 14/179 (7%)

Query: 95  ISYNRISQLSR---IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
            S NR+  L+     D L+G+ N                     LSI F D+D FK++ND
Sbjct: 326 ESENRMRHLAEQASRDALTGVFNRHQLGTALTHEFELASRQGWLLSIAFIDLDDFKRVND 385

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH VGD+V+   +  L  +  T   V R GGEEF      +    A ++   +     
Sbjct: 386 AHGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEFLVILPKTPADAALMVIERILTETA 445

Query: 205 NSQINISSGPSIHITISAGIAERCHK----EPISTIIYRADQALYVAKKSGRNRVVCFS 259
            + +    G  +HIT SAG+A         E I  ++  AD  LY +K  GRNRV  + 
Sbjct: 446 RTPMAQLPGGPLHITFSAGLATHGGVERQFESIEHLLQAADSTLYRSKHRGRNRVTAYD 504


>gi|281413173|ref|YP_003347252.1| diguanylate cyclase [Thermotoga naphthophila RKU-10]
 gi|281374276|gb|ADA67838.1| diguanylate cyclase [Thermotoga naphthophila RKU-10]
          Length = 416

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 13/225 (5%)

Query: 39  IATVIFIANIFLFYIGLTPFYG-LEYILVENLSLVIISITISLLLGYISGSILKELFISY 97
           I   IF    F  Y  +  F+  L ++      +VI+   I   L     ++L EL+   
Sbjct: 196 IILTIFGELSFTLYSDVCGFFNFLGHVFRLFSYMVILRGVIVNALANPVQALLFELYEEK 255

Query: 98  NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150
            ++ +++  D L+GL N + F   +          N  LS +  D+D FKQIND +GH  
Sbjct: 256 EKLKEIAHRDSLTGLFNRAFFNEWIQDQVRKAQFQNVPLSFIMIDVDNFKQINDTYGHLT 315

Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           GDKV+ F++  +     +  F  R GG+EF      +S+Q+A  +A+ +R+ I N     
Sbjct: 316 GDKVLRFVARCISDSIRSSDFAVRYGGDEFLVVLYNTSKQQAEQVASRIREKIRN----- 370

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           S    + + IS G+AE    +     + +AD+ +Y  K+  ++  
Sbjct: 371 SDELGVDVDISYGVAELKPGDNYLKFLQKADEEMYGMKREKKSCC 415


>gi|146280449|ref|YP_001170602.1| two-component response regulator [Pseudomonas stutzeri A1501]
 gi|145568654|gb|ABP77760.1| probable two-component response regulator [Pseudomonas stutzeri
           A1501]
          Length = 546

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 59/170 (34%), Positives = 80/170 (47%), Gaps = 10/170 (5%)

Query: 98  NRISQLSR---IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFG 147
            R   LS     D L+GLL H+     L           +  S+V  D+D+FKQ+ND +G
Sbjct: 374 QRARSLSTALARDSLTGLLKHADIKEQLALEVQRSSRSGKPASVVMLDLDHFKQVNDTYG 433

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD VI  L++ L         +GR GGEEF A     S  +A  + +++R       
Sbjct: 434 HAAGDNVIRALANLLRQRLRRIDSLGRYGGEEFVAVLPECSALQARRIFDEIRVRFAALT 493

Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            N        +T SAGI E       S ++ RADQALY+AK  GRN+V  
Sbjct: 494 FNAGDHQEFRVTFSAGICETDEHSAASVLLERADQALYLAKHQGRNQVQV 543


>gi|254226710|ref|ZP_04920287.1| GGDEF family protein [Vibrio cholerae V51]
 gi|125620771|gb|EAZ49128.1| GGDEF family protein [Vibrio cholerae V51]
          Length = 443

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 18/230 (7%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102
           +F+A + ++ +       LE  +  N   V+ +      L  ++ S    L     +  +
Sbjct: 219 LFLAMLIMWAVAGAWLSALE--IRRNRREVLRARMRQEHLQRLNHS----LHEQNIKFVE 272

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++  D L+G +N       L             +S++F DIDYFKQ+ND +GH +GD ++
Sbjct: 273 MAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDLL 332

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +  +         + R GGEEF      ++ ++A  LA  LR  I +          
Sbjct: 333 REFALVISREIRESDKLVRWGGEEFVVFCAQTTLEQAIELAERLRAKIADHSWIHGGA-- 390

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             IT S GIA+    E I+  + RAD+ALY AK+ GRNR+     +   +
Sbjct: 391 --ITCSIGIAQM-GDERITETVSRADEALYRAKRLGRNRIEVHYGLMAKS 437


>gi|56130758|ref|YP_145661.1| hypothetical protein pMOL30_130 [Ralstonia metallidurans CH34]
 gi|94152542|ref|YP_581949.1| diguanylate cyclase/phosphodiesterase [Cupriavidus metallidurans
           CH34]
 gi|56068748|emb|CAI11310.1| hypothetical protein [Cupriavidus metallidurans CH34]
 gi|93358912|gb|ABF12999.1| diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains) with
           PAS/PAC sensor(s) [Cupriavidus metallidurans CH34]
          Length = 705

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 100/233 (42%), Gaps = 19/233 (8%)

Query: 44  FIANIFLFYIGLTPFYGLEYILVENLSLVIISITI-------SLLLGYISG-SILKELFI 95
           F A IF        + G  ++L  + S+    +TI         +  +++  + + +   
Sbjct: 201 FYAEIFATLRDGGRWEGEVWLLRADGSIAPDWVTIKTVHDEHGEVFSFVAMFADIMQRES 260

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148
              +   L+  D L+GL N   F   LG   E+        S++F D++ FK +ND  GH
Sbjct: 261 LRAQYMHLAYYDSLTGLPNRRLFQDRLGHAIERSANKGTEFSLLFLDLNRFKDVNDTLGH 320

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQ 207
             GD+++  + ++   +     FVGR+GG+EF      +    +   +A  +    E ++
Sbjct: 321 SFGDRLLEVVGERFKRLVKEADFVGRIGGDEFTFILHDTADPAQVESIARRIFD--ELAK 378

Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             + +G   +++ S G++           +I  AD A+Y AK+ G      FS
Sbjct: 379 PIVLNGTQSYVSASIGVSRFPADGTTAEALIMNADAAMYRAKEDGIGACHFFS 431


>gi|330957396|gb|EGH57656.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 492

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 12/163 (7%)

Query: 103 LSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+  D L+GL N            +      E+LS++  D+D+FK  N+  GH  G + +
Sbjct: 316 LAATDGLTGLDNRRQLDKAMETEWARAQRSGERLSLLMIDVDHFKAFNERHGHQGGAEAL 375

Query: 156 AFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
             ++  +      P   + R GGEEF      +    A ++A ++R  +E+  +   +  
Sbjct: 376 RLIAQTISHTIRRPGDRLARYGGEEFVVVLPETDLNGAMMIAENIRHSVESLPLFKDAEH 435

Query: 215 SIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRV 255
              +T+S G+A       + + T    AD+ALY AK +GRNRV
Sbjct: 436 --PLTVSIGVASESVRQGDKLETFFGIADKALYQAKNNGRNRV 476


>gi|330811623|ref|YP_004356085.1| diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379731|gb|AEA71081.1| Putative diguanylate cyclase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 337

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 12/178 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYF 139
             +  +L I  +   +L+  D L+ + N                 + E LS++  D+D F
Sbjct: 164 SRVNHQLQIQLDENRKLAETDALTRVANRYRLDQALPLACERAQRFREPLSLIAMDVDDF 223

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND +GH  GD  +  +   +         + R GG+EF      ++  +A +LA  +
Sbjct: 224 KDINDRYGHAFGDAALIQVVQSVKRCERGGDLLVRWGGDEFIMILPNTTLADARLLAESI 283

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R+ + +  + +       IT+S G+ +R   E  + +++RADQALY +K SG+N V+C
Sbjct: 284 RRGLSDL-LPVGD---FQITMSFGVVQRLEDEQHAVLLHRADQALYRSKMSGKN-VIC 336


>gi|313496702|gb|ADR58068.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas putida BIRD-1]
          Length = 896

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + +  ++  RI +L+  D L+ L N  AFI SL           + ++  DID FK+IN
Sbjct: 453 DVTQTKLAQQRIERLAYTDNLTNLGNRPAFIRSLDERFARDGESSMCLLLVDIDNFKRIN 512

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++  L+ +L     +   + R    EFA     +S ++   +A  L   +
Sbjct: 513 DSLGHQTGDKLLISLARRLRNSLHSGGILARFASNEFAVLLDDTSLEDGQGVAQQLLCTL 572

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I++T S G+A    H    ++++  A  AL+ AK +G+++V  F+++ 
Sbjct: 573 DKPMF--VDNQLINVTASVGLACAPLHGVDPASLMKNAGLALHKAKANGKHQVQVFTEVL 630

Query: 263 NNTC 266
           N   
Sbjct: 631 NAEA 634


>gi|296102342|ref|YP_003612488.1| putative diguanylate cyclase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295056801|gb|ADF61539.1| putative diguanylate cyclase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 330

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 11/194 (5%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129
           +L +I+I + L L  ++ SI   L I    + +++ +D L  + N       +     KL
Sbjct: 137 TLPLIAIYL-LALSILTDSIALRLRIKSRELERIAMMDPLLDIANRRLLEKRIDHELNKL 195

Query: 130 -------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                  +++F DID FK +ND FGH VGD ++A +S  L +         RLGG+EF  
Sbjct: 196 RQTCRESALMFIDIDNFKDVNDRFGHKVGDALLAAVSQILHLSTRPNDTPARLGGDEFVV 255

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRAD 241
               ++ +EA ++A  +       +    +  ++H T+S GIA    +   ++  +  AD
Sbjct: 256 LLPDTTLEEAQVVARRIMDAAAMKK--EVAQETVHCTLSIGIACATREMISVTDWLQAAD 313

Query: 242 QALYVAKKSGRNRV 255
            ALY AK+ G+NR+
Sbjct: 314 NALYRAKRDGKNRI 327


>gi|229118797|ref|ZP_04248147.1| Sensory box/GGDEF [Bacillus cereus Rock1-3]
 gi|228664667|gb|EEL20159.1| Sensory box/GGDEF [Bacillus cereus Rock1-3]
          Length = 909

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 11/214 (5%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           +  ++    I   +++ V I +   +   Y+    + E      +I+ L+  D L+ L N
Sbjct: 430 IRAYHKNRDIYYLHVTAVPIFLKDHISGVYLMIKDITESKQQQEQINFLAYHDTLTELAN 489

Query: 115 HSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
             AF   L              +++F D+D FK IND  GH VGD ++  ++ +L  +  
Sbjct: 490 RRAFHQYLEKAIARAKISKSSFAVMFLDLDRFKVINDTLGHRVGDLLLIAVAKRLERLST 549

Query: 168 TPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
             M + RL G+EF        ++ +   +A+ +   + N    I +   + I+ S GIA 
Sbjct: 550 QHMKLARLAGDEFTILIENYKKRTDVKKIADMIVAAM-NKPFEIENQH-LRISPSIGIAI 607

Query: 227 RCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                E   +I+  AD A+Y AK  G+NR   ++
Sbjct: 608 YPEAGEDPLSILQHADMAMYEAKNKGKNRSSLYT 641


>gi|149187642|ref|ZP_01865939.1| diguanylate cyclase [Vibrio shilonii AK1]
 gi|148838522|gb|EDL55462.1| diguanylate cyclase [Vibrio shilonii AK1]
          Length = 318

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 9/163 (5%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNF 146
                 + + +  D L+G  N      +L    +  +       ++  D+D FK IND +
Sbjct: 130 MEERQTLLEEANTDGLTGCFNRRYLHLALEQQKQNFAQSQTPSSLLIIDVDRFKPINDKY 189

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH +GD+V+  +   +         + R GG+EF     GS+  +A  LA  L + I+  
Sbjct: 190 GHSIGDRVLIDVVKVIKRFTREEDMLCRYGGDEFVLLLPGSNIDQAYALAGRLSEKIDKL 249

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
               S G S +++ S G+A    ++  + II  AD+ALYV+KK
Sbjct: 250 TFKSSGGKSFNVSCSIGVATHTVED--ANIIELADKALYVSKK 290


>gi|269961990|ref|ZP_06176345.1| PAS domain S-box/GGDEF domain protein [Vibrio harveyi 1DA3]
 gi|269833313|gb|EEZ87417.1| PAS domain S-box/GGDEF domain protein [Vibrio harveyi 1DA3]
          Length = 679

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+ L N   F   L         L + + DID FK IND+ GH +GDKVI  +S 
Sbjct: 253 AHIDSLTKLYNRFGFTKRLEQLIKSQTPLLVFYLDIDNFKNINDSLGHHIGDKVIQEVSA 312

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           +L         +G LGG+EF        + + A IL+  +  +I  +Q       S  + 
Sbjct: 313 RLKRSLPNQAIIGHLGGDEFGIILPEPENTRMAEILSERIISLI--NQPFDLHHFSKRLA 370

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +      +    ++  AD A+Y AK  GRNR++ F+D  N   
Sbjct: 371 CSIGSVRYPEDGQDARILLQNADTAMYEAKDRGRNRLIKFNDQMNKEA 418


>gi|262280968|ref|ZP_06058751.1| ggdef domain/eal domain-containing protein [Acinetobacter
           calcoaceticus RUH2202]
 gi|262257868|gb|EEY76603.1| ggdef domain/eal domain-containing protein [Acinetobacter
           calcoaceticus RUH2202]
          Length = 684

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 65/266 (24%), Positives = 128/266 (48%), Gaps = 18/266 (6%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIG--LTPFYGLEYILV 66
           L+  L ++         T  I FS+  ++ I  + + A I        ++ +     +L+
Sbjct: 157 LAFLLAYKLKDTERHRLTLKIAFSVMMTLSIMGMHYTALIATNITDKFISQYQAEHDLLL 216

Query: 67  ENLSLV-----IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121
             + LV     + S  +++L   ++   L EL  +   ++ LS  D L+ L N    +  
Sbjct: 217 FTIILVTCLVLVASFIVAMLEQRLTQQNL-ELRKANKELANLSIQDNLTKLPNRLYLVDY 275

Query: 122 LG------SY-NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
                    Y ++K++ ++ D+D FK +ND FGH +GD+++  ++++L         + R
Sbjct: 276 AEVLLSDHRYKDQKIAFLYIDLDRFKSVNDAFGHHIGDQLLIQMANRLHWQLNEKCKLLR 335

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           +GG+EF   A  ++  E+ +LA  + ++I+ S     SG  I+I+ S G+A    H + +
Sbjct: 336 IGGDEFLLIAENTNADESVVLAEKVLQLIQES--YQISGKEINISASLGVALFPEHGQNV 393

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
             ++  AD A+ ++K+ GRN    FS
Sbjct: 394 QDLLMNADAAMLMSKEQGRNTYTIFS 419


>gi|254465270|ref|ZP_05078681.1| response regulator PleD [Rhodobacterales bacterium Y4I]
 gi|206686178|gb|EDZ46660.1| response regulator PleD [Rhodobacterales bacterium Y4I]
          Length = 464

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 17/183 (9%)

Query: 92  ELFISYNRIS-------QLSRIDCLSGLLNHSA---FISS----LGSYNEKLSIVFFDID 137
           +     +R+        + + +D ++GL N      F+        +  EK +++  D+D
Sbjct: 274 QHKARKDRLRDSVRNGLRAAVLDPMTGLYNRRYAKPFLDRVAHSAAANGEKFAVMLADLD 333

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
           +FK+IND +GHP GD V+   + ++  V G    + R+GGEEF A   G+SE EA I A 
Sbjct: 334 HFKRINDVYGHPAGDAVLIEAARRMQQVLGPADLLARVGGEEFMAVLPGASEAEAGIAAV 393

Query: 198 DLRKIIENSQINISSGPS-IHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254
            L   I  +   +      + +TIS G         +  + ++ +ADQALY AK +GRN+
Sbjct: 394 ALCNAINGTPFQVPGAAEPVKVTISIGAVMGGGGKEDSTAALVEKADQALYNAKNAGRNQ 453

Query: 255 VVC 257
           V  
Sbjct: 454 VTL 456


>gi|149191225|ref|ZP_01869482.1| PAS:GGDEF [Vibrio shilonii AK1]
 gi|148834974|gb|EDL51954.1| PAS:GGDEF [Vibrio shilonii AK1]
          Length = 218

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 10/181 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            + +    +N +  L+  D L+GL N           I+S   +   +S +  D+D FK 
Sbjct: 21  DISKTVARHNELEFLAIRDVLTGLYNRRFLELQLKHEIASFKRHGHDMSCLMLDVDGFKS 80

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND FGH +GD V+  +   L+       F  R GG+EF      +S  +A  LA  +R+
Sbjct: 81  INDRFGHSIGDYVLQSIGKTLLGAVREEDFCFRFGGDEFTILLPKTSLPDAYRLAERVRE 140

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK--KSGRNRVVCFS 259
            + +  +  S+G    I IS G+A          ++  AD+AL   K    G+N    F 
Sbjct: 141 SVASKTLYSSTGHPFKIKISLGVASLQKGLE-DQLLALADKALMEVKLNAKGKNTSYVFC 199

Query: 260 D 260
           D
Sbjct: 200 D 200


>gi|116253214|ref|YP_769052.1| GGDEF/EAL transmembrane sensory box protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115257862|emb|CAK08960.1| putative GGDEF/EAL transmembrane sensory box protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 783

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 14/184 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           + + EL  S +R  + +  D L+GLLN   F       I++  +  ++L+ +F D+D FK
Sbjct: 332 TDVTELKASEDRNHRQAITDHLTGLLNRQGFEAVLDNKIAAADAAGQELACLFVDLDRFK 391

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
            INDN GH  GD  +  L ++L           RLGG+EFA        E  A ++   +
Sbjct: 392 WINDNMGHAAGDMALVELVERLKTHLAPSDEAARLGGDEFAILLPAKDAENRAKVMCEQI 451

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             I      +    P +H++ S GIA    H E  + ++ ++D A+Y  K+ G+N    F
Sbjct: 452 ASI-----FDTPFTPDMHLSASVGIAIYPHHAETAAELLQKSDMAMYAKKRDGKNGAQLF 506

Query: 259 SDIE 262
            +  
Sbjct: 507 DNAM 510


>gi|21242683|ref|NP_642265.1| GGDEF family protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21108155|gb|AAM36801.1| GGDEF family protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 948

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 8/172 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           +EL  +   ++  +  D L+GLLN S  + ++             L++V  D+D+FKQ+N
Sbjct: 768 RELENARAALALKASHDALTGLLNRSGILEAMAEELQGCAHGEHPLAVVLIDLDHFKQVN 827

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH VGD V+A +  +L         VGR GGEE      G S+Q    L   + + +
Sbjct: 828 DEHGHLVGDAVLAKVGARLTACLRDSDKVGRYGGEELLLLLPGMSQQSQHRL-RAIHEAL 886

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +   + +   + +T S G++     +  ++++ RAD+ALY AK+SGRNR+
Sbjct: 887 SLAPYEVGAARPLQVTCSVGVSWFRVGDTAASLLARADEALYRAKRSGRNRI 938


>gi|89092611|ref|ZP_01165564.1| serine/threonine kinase with two-component sensor domain
            [Oceanospirillum sp. MED92]
 gi|89083123|gb|EAR62342.1| serine/threonine kinase with two-component sensor domain
            [Oceanospirillum sp. MED92]
          Length = 1752

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 6/179 (3%)

Query: 84   YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDY 138
            + + S +         + + +  D L+G+LN  A +     Y     +E + +   D+DY
Sbjct: 1573 FAAMSDISARKALEGMLHKQAHTDPLTGILNRRAVLDLSSQYKKAAEDESVFVAMLDLDY 1632

Query: 139  FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
            FK++ND + H  GD+V+   + ++  +        R+GGEEF       SE++A ++   
Sbjct: 1633 FKRLNDTYSHSAGDQVLKAFASEVSGLLRDGDVFARMGGEEFLVMLSVGSEEQAELILQR 1692

Query: 199  LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +R+ I    +       + +T+S G A          + ++AD ALY AK  GRN VVC
Sbjct: 1693 IREKIAMMTVPF-DSVDLKVTVSIGFAAWSSDAEFKQVTHQADLALYEAKGRGRNMVVC 1750


>gi|148262135|ref|YP_001228841.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Geobacter uraniireducens Rf4]
 gi|146395635|gb|ABQ24268.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Geobacter uraniireducens Rf4]
          Length = 440

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 11/182 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
             + E  ++  R+  ++  D L+ L N + F   LG        Y E  +++F D+D FK
Sbjct: 254 RDITERKLAKERLEYMANFDALTALPNRTLFFDRLGQVLFRAKRYQELFALLFLDLDRFK 313

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDL 199
           Q+ND FGH +GD+++  ++D+L+        V R+GG+EF          Q+A  +A  +
Sbjct: 314 QVNDTFGHDIGDRLLGEVADRLIACLRESDTVARMGGDEFTVILSRIADMQDAESVACKI 373

Query: 200 RKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
              +         G    I  S GI+   C      +++  AD A+Y AK++GRN    +
Sbjct: 374 ITTLAA--PFCLQGHECTIGASIGISIFPCDSLDPESLLKMADTAMYQAKENGRNTFSFY 431

Query: 259 SD 260
           SD
Sbjct: 432 SD 433


>gi|88798609|ref|ZP_01114193.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Reinekea sp. MED297]
 gi|88778709|gb|EAR09900.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Reinekea sp. MED297]
          Length = 295

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 93/187 (49%), Gaps = 11/187 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
            ++     +      RI++L+  D ++GL+N +                  K++ +F D+
Sbjct: 109 LVTMRDDTQRLTFEERITRLAHFDSITGLINRNLLEDRARQAIYRAKRLQGKMAFLFLDL 168

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAIL 195
           DYFKQ+ND+FGH VGD+++  +  ++  +      +GRLGG+EF       S   +A ++
Sbjct: 169 DYFKQVNDHFGHLVGDRLLKAVGLRVQSILRDDDTMGRLGGDEFLILVERISYADDAMLI 228

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
              +   +   +     G  + I+ + GIA    H   I+T++  AD+A+Y AK+ GRN+
Sbjct: 229 GEKIIHTLA--EPFGIDGHRLQISGTIGIALYPDHGHAINTLLDHADKAMYRAKELGRNK 286

Query: 255 VVCFSDI 261
           +  F+  
Sbjct: 287 LAVFNPA 293


>gi|127513682|ref|YP_001094879.1| diguanylate cyclase [Shewanella loihica PV-4]
 gi|126638977|gb|ABO24620.1| diguanylate cyclase [Shewanella loihica PV-4]
          Length = 518

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 80/174 (45%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           KE      +++ L   D L+ L N +A    +         +   L +   DID+FK IN
Sbjct: 347 KERLFEQQKLNLL---DTLTQLPNRAALEERMEQEFRNYQRHRHPLWVAVADIDHFKSIN 403

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           DNFGH  GDK +  ++  L        FV R GGEEF       S  +   L N +R+ +
Sbjct: 404 DNFGHSTGDKTLQVIAMALKNSLRESEFVARYGGEEFVLLIPDVSANDIEQLLNRVREKV 463

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +N      +   I +T+S G A+    E IS    RAD ALY AK   R+RV+ 
Sbjct: 464 KNIPFKFKN-QRITVTVSIGAAQILENEQISETFERADAALYKAKHESRDRVII 516


>gi|307311590|ref|ZP_07591230.1| diguanylate cyclase [Escherichia coli W]
 gi|306908145|gb|EFN38644.1| diguanylate cyclase [Escherichia coli W]
 gi|315060307|gb|ADT74634.1| predicted diguanylate cyclase [Escherichia coli W]
 gi|323379132|gb|ADX51400.1| diguanylate cyclase [Escherichia coli KO11]
          Length = 452

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 22/258 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LV 66
            + +WL        F+   + I+  +    F A +  I+ +F+    ++ +Y    I +V
Sbjct: 199 MIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVV 258

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             L++++I +            I   L ++ N    ++  D L+ + N + F + L    
Sbjct: 259 SKLTVMVIFMC----------HIFSALRVTKN----IAHRDPLTNIFNRNYFFNELTVQS 304

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +      ++  DID+FK++ND +GHPVGD+VI  + + +         + R+GGEEF 
Sbjct: 305 ASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFG 364

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYR 239
                   + A  LA  +R+ +E    +         +TIS G +  + +    + I   
Sbjct: 365 VLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRL 424

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK++GRN+VV 
Sbjct: 425 ADNALYEAKETGRNKVVV 442


>gi|300790042|ref|YP_003770333.1| hypothetical protein AMED_8233 [Amycolatopsis mediterranei U32]
 gi|299799556|gb|ADJ49931.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
          Length = 584

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 10/186 (5%)

Query: 82  LGYISGSILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYN-----EKLSIVFFD 135
           +  ++     E   + +  I+Q +  D L+GL N  A    L         + L++   D
Sbjct: 378 IATLNARREHERLSAEHGAITQQALQDPLTGLPNRRALDEKLRQLASSADAQPLAVALVD 437

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195
           +D FK +ND   H  GD V+  ++  L         V R GG+EF     G+    A + 
Sbjct: 438 LDGFKGVNDKQSHAEGDNVLRVVASTLRDALRGDDLVARYGGDEFIVLLPGTPASAAKMA 497

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                K + N   ++S G    +T+S G+     +E    ++ RAD A+Y AK+ G N+V
Sbjct: 498 LGRAVKSVANLPHHLSHG----VTLSIGLVSLRPQERGEQVLARADAAMYQAKRGGGNQV 553

Query: 256 VCFSDI 261
              + +
Sbjct: 554 ASANSM 559


>gi|297568208|ref|YP_003689552.1| diguanylate cyclase/phosphodiesterase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924123|gb|ADH84933.1| diguanylate cyclase/phosphodiesterase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 882

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 90/207 (43%), Gaps = 10/207 (4%)

Query: 64  ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS--- 120
           ++++++  +++   ++ LL  +    +K ++     +   +  D ++ L N   F     
Sbjct: 419 MVMDSIYHIVLDSVLATLLNLVGS--VKAIYKYTKDLEYYATRDPITQLHNQRMFWELLG 476

Query: 121 ----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176
                   ++   S++  DID FK IND +GH  GD  +  L++ L        F+ R G
Sbjct: 477 YEVGRAQRHDYSFSLMVIDIDNFKTINDRYGHAFGDLFLQQLAEALRQAVRDGDFIARYG 536

Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPIST 235
           G+EF      ++ ++   +A  + K I    +  + G  +  T+S GIA    H +    
Sbjct: 537 GDEFTVLLPTTTREQTISVAERIVKAISGMSVLTAEGIKVQATVSLGIAMFPEHGKSAKD 596

Query: 236 IIYRADQALYVAKKSGRNRVVCFSDIE 262
           +   AD  +Y  K  G+N +    + E
Sbjct: 597 LFLVADNMMYKVKGEGKNAIAEPEEAE 623


>gi|297569019|ref|YP_003690363.1| diguanylate cyclase/phosphodiesterase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924934|gb|ADH85744.1| diguanylate cyclase/phosphodiesterase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 548

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 57/251 (22%), Positives = 106/251 (42%), Gaps = 20/251 (7%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTP--------FYGLEYILVENLSLVIISITISL 80
           +  +  ++ F    IF ++  L  + L P        + G  YIL    + V++ + I L
Sbjct: 9   LRLAAIYAFFGVLWIFFSDRVLLAMDLEPEPLTLLQTYKGWFYIL---FTAVLVFLLI-L 64

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVF 133
              Y   S  +    + ++   L   D L+GL N       L         +   L+I F
Sbjct: 65  QAEYRFQSTDQLFRQADSQRKHLIHYDPLTGLPNRQLLQLRLEHALAWAKRHRSLLAIHF 124

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK++ND+ GH  GD+++     +L  + G    + R GG++F       +  E A
Sbjct: 125 IDLDRFKEVNDSLGHQAGDELLLMAGRRLSGILGQDDTLARFGGDKFILLQKTVAGPEEA 184

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
            +A         +   ++    I +  S GI+      +  + ++  A+ A+Y AK+ GR
Sbjct: 185 AVAAQKLLAALATPFRVTDQNEIFVGASIGISIFPNDGQTAADLLKNAEAAMYHAKEGGR 244

Query: 253 NRVVCFSDIEN 263
           N+   ++ + N
Sbjct: 245 NQFHFYTGLMN 255


>gi|254447138|ref|ZP_05060605.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor [gamma
           proteobacterium HTCC5015]
 gi|198263277|gb|EDY87555.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor [gamma
           proteobacterium HTCC5015]
          Length = 716

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 95/219 (43%), Gaps = 20/219 (9%)

Query: 64  ILVENLSLVIISITISLLL--GY-------ISGSILKELFISYNRISQLSRIDCLSGLLN 114
           + VE    V +++ +  LL  GY       +    + E     + + +++  D L+G  N
Sbjct: 236 LRVEGREPVWVNLFLKALLQQGYGAENSYILIAENITEKKQVSDHVHEIAYHDNLTGGAN 295

Query: 115 HSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
            + F       I+     + + +++  D+DYFK IND+ GH VGD+++  ++  L     
Sbjct: 296 RARFQDEVARAIAHAEKASSQFAVLILDLDYFKTINDSLGHEVGDEMLKEVARTLQECIR 355

Query: 168 TPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
               + RLGG+EF        S Q+A  +A  +   ++  +         +   S GI+ 
Sbjct: 356 DSDLLARLGGDEFGLLLPRVRSPQDACTVAQKVLNRMQ--EPICIENHEFYAGASIGISF 413

Query: 227 RC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
                E +  ++  AD A+Y AK+ GR     F+   + 
Sbjct: 414 YPQDGESMQGLMRSADTAMYRAKELGRQNYQLFNPSMDR 452


>gi|170750649|ref|YP_001756909.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
 gi|170657171|gb|ACB26226.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
          Length = 819

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 12/189 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           + + + +   +   +++L+R D L+GL N + F  +L              ++++ D+D 
Sbjct: 365 TFTDITKRKAAEAEVARLARHDVLTGLPNRALFHETLERSLADIVQRGGACAVLYLDLDG 424

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND+ GH  GD+++  ++  L  + G    V RLGG+EFA  + G + +  A+    
Sbjct: 425 FKSVNDSLGHQAGDELLRRVAAGLRGIAGDGA-VARLGGDEFAVLSDGGAAEAGALAERL 483

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +   + +S  ++  G  + + +S GIA    H      +  RAD ALY AK  GR     
Sbjct: 484 I--ALFDSPFSV-GGHRVGVGLSVGIALAPEHGTDAEPLYRRADLALYRAKAEGRGTYRI 540

Query: 258 FSDIENNTC 266
           F+   +   
Sbjct: 541 FTPAMDEEA 549


>gi|113968700|ref|YP_732493.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113883384|gb|ABI37436.1| diguanylate cyclase [Shewanella sp. MR-4]
          Length = 608

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 100/249 (40%), Gaps = 15/249 (6%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG-LEYILVENLSLVIISITISLLL 82
           P  +    S+      A  I  A+  L  + L+     L + + + + L   +  ++ LL
Sbjct: 355 PEEYQAMCSVGICSIAAYAIKNADELLGLLSLSMISRPLNWSVQKKVMLTQFAAALNELL 414

Query: 83  -----GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFF 134
                     S+ + L     ++  ++  D L+GL N   F  +L      +    ++  
Sbjct: 415 LREEKERQMLSLQQALVSVNTQLRVMADTDELTGLSNRRPFTQTLETLLQQDTPFGLLML 474

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF--GTPMFVGRLGGEEFAAAALGSSEQEA 192
           D+DYFK  ND +GH  GD  +  ++  L           + R+GGEEFA      S  + 
Sbjct: 475 DVDYFKSYNDTYGHLEGDAALKRVAQALTRCGILPQENLLARIGGEEFAIVLQQISPIQL 534

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAK 248
             +AN L   +   +I   S P   IT+S G             +S ++ R D  LY AK
Sbjct: 535 EAIANQLCYQVAALEIPHKSSPKGKITLSIGGVYFPKESQDSLTLSEVLRRTDICLYRAK 594

Query: 249 KSGRNRVVC 257
             GRN VV 
Sbjct: 595 DQGRNTVVI 603


>gi|169830356|ref|YP_001716338.1| PAS/PAC sensor-containing diguanylate cyclase [Candidatus
            Desulforudis audaxviator MP104C]
 gi|169637200|gb|ACA58706.1| diguanylate cyclase with PAS/PAC sensor [Candidatus Desulforudis
            audaxviator MP104C]
          Length = 1338

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 8/165 (4%)

Query: 89   ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS----YNEKLSIVFFDIDYFKQIND 144
             + E      ++  LS  D L+GL N + F   +          + I+  D+D  K +ND
Sbjct: 978  DITERRRMEEQLRHLSLHDPLTGLYNRNYFEREMRRAEGMRQVPVGIIVCDVDGLKLVND 1037

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
              GH  GD ++   +  L   F     V R+GG+EFA    GS         N +R+ +E
Sbjct: 1038 TLGHDAGDALLVATAGVLKRSFRPGDMVARVGGDEFAVLLPGSGRDVVEEAGNRIREAVE 1097

Query: 205  NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAK 248
                  ++ P + +++S G A        ++ +   AD  +Y AK
Sbjct: 1098 TYN---AANPGMALSVSVGFAVADESPVNVNELFREADNNMYRAK 1139


>gi|153215333|ref|ZP_01949946.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|124114776|gb|EAY33596.1| GGDEF family protein [Vibrio cholerae 1587]
          Length = 443

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 18/230 (7%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102
           +F+A + ++ +       LE  +  N   V+ +      L  ++ S    L     +  +
Sbjct: 219 LFLAMLIMWAVAGAWLSALE--IRRNRCEVLRARMRQEHLQRLNHS----LHEQNIKFVE 272

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++  D L+G +N       L             +S++F DIDYFKQ+ND +GH +GD ++
Sbjct: 273 MAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDLL 332

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +  +         + R GGEEF      ++ ++A  LA  LR  I +          
Sbjct: 333 REFALVISREIRESDKLVRWGGEEFVVFCAQTTLEQAIELAERLRAKIADHSWIHGGA-- 390

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             IT S GIA+    E I+  + RAD+ALY AK+ GRNR+     +   +
Sbjct: 391 --ITCSIGIAQM-GDERITETVSRADEALYRAKRLGRNRIEVHYGLMAKS 437


>gi|121610171|ref|YP_997978.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Verminephrobacter eiseniae EF01-2]
 gi|121554811|gb|ABM58960.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Verminephrobacter eiseniae EF01-2]
          Length = 851

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 16/189 (8%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
            + +  ++   I +L+  D L+GL N           I++    ++  +++F D+D FK 
Sbjct: 405 DITDRKLAEQEIERLAFYDALTGLPNRRLLLDRLQRSIATCQRTHKLGALLFIDLDNFKD 464

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA------LGSSEQEAAIL 195
           +ND  GH +GD+++A ++ +LV        V R GG+EF          L S+  +A ++
Sbjct: 465 LNDTLGHDMGDQLLAQVATRLVASVRAADTVARFGGDEFVVMLEALAPDLRSATAQAEMV 524

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254
           A+ L   + N    +  G     T+S G+     +   +  ++ RAD ALY AK +GRN 
Sbjct: 525 ADKLLASL-NQPFALDGGQHYS-TLSIGVTLFGEQRLSVDELLKRADLALYQAKAAGRNT 582

Query: 255 VVCFSDIEN 263
              F     
Sbjct: 583 QRFFDPDMQ 591


>gi|238784009|ref|ZP_04628025.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia bercovieri ATCC 43970]
 gi|238715117|gb|EEQ07113.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia bercovieri ATCC 43970]
          Length = 664

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFK 140
           SG+ + +   +  R+  L+  D ++GL N  A    + S  +      + I++ D+D FK
Sbjct: 218 SGTDITKERRAQERLRILANTDMITGLPNRHAIHERINSAIQTRGDTSVGIIYLDLDNFK 277

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND++GH  GD+++  +S  ++        + RLGG+EF      S   E       + 
Sbjct: 278 KVNDHYGHMFGDRLLKDVSLAILSCLEENEMLARLGGDEFIVLVENSCLNELEATTQRI- 336

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++   S GIA    H + +  II  AD A+Y AK+ G+     F
Sbjct: 337 --LNRMKLPFRVGLIEVYTGCSIGIALCPEHGDTLENIIRSADTAMYTAKEHGKRTYSIF 394

Query: 259 SDIENN 264
           S   N 
Sbjct: 395 SQEMNK 400


>gi|331014946|gb|EGH95002.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 696

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + +  ++  RI +L+  D L+ L N  AFI +L        +  +S++  DID FK+IN
Sbjct: 454 DITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDERFARDTDTPMSLLLVDIDNFKRIN 513

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++  L+ +L         + R    EFA     + ++     A+ +   +
Sbjct: 514 DSLGHQTGDKLLISLARRLRNTLSPTDVLARFASNEFAVLLDNTGQEAGQATASQVLATL 573

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I +T S G+A    H     T++  A  AL+ AK +G+++V  F++  
Sbjct: 574 DKPMF--VDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFTEAL 631

Query: 263 NNTC 266
           N   
Sbjct: 632 NAEA 635


>gi|217975275|ref|YP_002360026.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica OS223]
 gi|217500410|gb|ACK48603.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella baltica OS223]
          Length = 310

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 10/174 (5%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDN 145
           L    + +  ++ +D L+G+ N   F   L    +        LS+V  D+D+FK+ ND 
Sbjct: 133 LKRQSDLLHSIALLDSLTGVANRRQFEQRLPEIWKHCCRNELALSVVMLDVDFFKRFNDR 192

Query: 146 FGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           +GH  GD+ +  ++  +         FV R GGEEF      +    A   A  +   ++
Sbjct: 193 YGHQEGDQCLRQVAKAISDSLQRATDFVARYGGEEFICILPETKLAGAIHTAQKIVNAVQ 252

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVV 256
              +         +TISAG+A    K  +   T+I  ADQ LY+AK+SGRN+VV
Sbjct: 253 ALHLEHLESSFQDVTISAGVASVLPKSDLTWQTLIETADQQLYLAKESGRNQVV 306


>gi|170728813|ref|YP_001762839.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169814160|gb|ACA88744.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
          Length = 332

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 116/271 (42%), Gaps = 18/271 (6%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE 67
           FL +   +   LESF     + +      IF   +   A   +    +     + Y  + 
Sbjct: 64  FLVLLGIYLAKLESF----LLAWAFTLPIIFYLLLGRKAGKLITLTMMLSIMVIIYPKLP 119

Query: 68  NLSLVIISITIS-LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-- 124
           +   V+ +   S LL+  IS         +   + +L+  D L+G  N  +         
Sbjct: 120 SFRPVMTNFAFSYLLIWAISHIYESNRESAELALHKLALTDPLTGTNNRLSLQERFNQST 179

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
               ++ L+++  D+D+FKQ+NDNFGH  GD V+  +++ L         + R+GGEEF 
Sbjct: 180 QVSEHKPLTLLLLDVDHFKQVNDNFGHVAGDDVLKSIANLLTKYTDDLD-LFRIGGEEFC 238

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                SS QE+  LA  LR  +E     +S G  I  TIS G+        +  ++  AD
Sbjct: 239 IFLHNSSTQESLTLAQTLRANVERETF-VSQGLKIQATISIGVTLFKEDMQLCDLLRSAD 297

Query: 242 QALYVAKKSGRNRVV------CFSDIENNTC 266
           + LY AK SGRNRV+         ++   T 
Sbjct: 298 EQLYRAKLSGRNRVMHNLVPAIEEEVMAQTA 328


>gi|56751597|ref|YP_172298.1| hypothetical protein syc1588_d [Synechococcus elongatus PCC 6301]
 gi|56686556|dbj|BAD79778.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 837

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 11/168 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQIN 143
           E   +  ++  L+  D L+ L N + F+  L +        +    +++F D D FK +N
Sbjct: 388 ERQQAQAQLWHLAHFDTLTQLPNRAYFVEQLHAWFNRYKADHQYPFAVLFLDCDRFKIVN 447

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GD ++  ++ +L     +P+   RLGG+EF              LA  L ++I
Sbjct: 448 DSLGHSAGDVLLTQVAQRLQSCIASPVIFARLGGDEFGVLVPAQDPGYPQDLAEQLHELI 507

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250
                    G  I+I +S GI+    + +    ++  AD A+Y AK++
Sbjct: 508 --VHPFEIQGQRIYIGVSIGISFVSAQIDAAEELLRSADTAMYAAKRN 553


>gi|13473025|ref|NP_104592.1| hypothetical protein mlr3504 [Mesorhizobium loti MAFF303099]
 gi|14023773|dbj|BAB50378.1| mlr3504 [Mesorhizobium loti MAFF303099]
          Length = 808

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 83/192 (43%), Gaps = 19/192 (9%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---------------NEKL 129
           I+   ++E   +   I +L+  D L+GL N  +F S L                     L
Sbjct: 336 IAVRDIRERKKAEEEILRLAHFDPLTGLANRRSFSSRLDMEIASMNRIANGDTGVKGRHL 395

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SS 188
           +++ FD+D FK++ND +GH  GD ++  ++     V      + RLGG+EFA  A     
Sbjct: 396 ALLLFDLDRFKEVNDLYGHGAGDAMLQKVATCAAGVLRHGQMLARLGGDEFAIIAPNLPD 455

Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVA 247
            Q A  +A  L   +       + G    ++ S GIA      E  + +I  AD ALY A
Sbjct: 456 PQAAGRIAGSLLAAMREENRVAAGGGL--VSASIGIAIYPLDAEDQTGLISHADTALYRA 513

Query: 248 KKSGRNRVVCFS 259
           K  GR+    F 
Sbjct: 514 KTEGRDTYRYFE 525


>gi|146293552|ref|YP_001183976.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella putrefaciens CN-32]
 gi|145565242|gb|ABP76177.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella putrefaciens CN-32]
          Length = 1438

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 87/184 (47%), Gaps = 7/184 (3%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQIND 144
            S +         + +L+  D L+GL N S    +L +   K    S++  D+D FK+IND
Sbjct: 990  SDISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLSNLVNKEIAHSLMVLDLDNFKRIND 1049

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKII 203
            + GH VGD+++  +S ++  +      + RLGG+EFA     GS    +A +A  + +  
Sbjct: 1050 SLGHQVGDQLLKLVSIRVKSILPKNTSIYRLGGDEFAIVLDKGSDISASAAIAGRVIEAF 1109

Query: 204  ENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDIE 262
                 NI+    + + +S GI      E     ++ +AD A+Y AK +G N    +S+  
Sbjct: 1110 -KMSFNINE-EQLVLGLSIGIVLYPEDEQNEQALLRKADIAMYHAKSAGGNCYQFYSESL 1167

Query: 263  NNTC 266
            N   
Sbjct: 1168 NQHA 1171


>gi|317486914|ref|ZP_07945724.1| GGDEF domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316921789|gb|EFV43065.1| GGDEF domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 874

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 60/215 (27%), Positives = 95/215 (44%), Gaps = 18/215 (8%)

Query: 60  GLEYILVENLSLVIISITISLL--------LGYISGSILKELFISYNRISQLSRIDCLSG 111
            LEY  +   + + +S +I+LL        L +   + + E       +   S  D L+ 
Sbjct: 659 SLEYRTLRGDTFIWVSASINLLKDPASGDLLAFGYLTDITERRQREAELVYKSERDFLTK 718

Query: 112 LLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           L N SA       Y         L+    D+D FK +ND  GH  GD ++  ++ +L   
Sbjct: 719 LYNRSAVEKRFSEYAASASGDGLLAFFSMDLDGFKNVNDTLGHLEGDTLLQLVARELESC 778

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHITISAGI 224
           F     VGRLGG+EF A   G S +E     A +L   I + ++         +++S G+
Sbjct: 779 FRVDDIVGRLGGDEFIALMYGVSTREIIERKAEELCARIRSIRMAHPRYS--GVSVSIGV 836

Query: 225 AERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           A    H +    +  +AD ALY AK+ GR+R V +
Sbjct: 837 AIAPEHGDSFEELYAKADVALYHAKQGGRDRFVIY 871


>gi|269966199|ref|ZP_06180288.1| putative GGDEF family protein [Vibrio alginolyticus 40B]
 gi|269829114|gb|EEZ83359.1| putative GGDEF family protein [Vibrio alginolyticus 40B]
          Length = 252

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 54/180 (30%), Positives = 81/180 (45%), Gaps = 8/180 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
            I    +         +   S+ID L+ + N   F   L          N   +++ FD+
Sbjct: 67  LILTRNISNRHRVETLLRHQSQIDALTNIYNRRVFFEKLTEEVIKAQEPNYHSALLLFDL 126

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK IND  GH  GD V+  L+D +  +        R+GGEEFA     +S   A  + 
Sbjct: 127 DFFKVINDKRGHDAGDYVLETLADLVSHLLVKDEIFARVGGEEFAIILPETSLSAAKEVG 186

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            ++R  I+N Q        I +T+S G+ E    E    +   AD+ALY AK++GRN V 
Sbjct: 187 EEVRSHIQNCQFEF-EKIEIPVTVSVGVVEIGRNETTKRLYAHADKALYAAKRNGRNCVA 245


>gi|317048561|ref|YP_004116209.1| diguanylate cyclase [Pantoea sp. At-9b]
 gi|316950178|gb|ADU69653.1| diguanylate cyclase [Pantoea sp. At-9b]
          Length = 389

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 68/256 (26%), Positives = 113/256 (44%), Gaps = 24/256 (9%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           +W        +F P   +++  + F +        A IFL     TP +G       ++ 
Sbjct: 137 LWRARASLTVTFWPAQMLLWIHLLFHV--------ARIFLDDAVATPVHGAIGGSSFSVY 188

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------- 123
           +++ SI   + L +   +++ E     ++++ L   D L+ + N  A  +          
Sbjct: 189 VILESILFVIGLTFTILAMVNERTQIAHKLASL--HDPLTSVWNRRALFAQAEKIIARRL 246

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                 + V FD+D+FK IND +GH  GD+V+         +        RLGGEEFAA 
Sbjct: 247 RQQLPFTAVLFDLDHFKSINDRYGHQQGDRVLIDFCQIAQSLLPEEGQFARLGGEEFAAI 306

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQ 242
             G SEQ A ++   +R   + S  +     +I  T+S G A    ++    T++  AD+
Sbjct: 307 LPGDSEQ-AQMVCERIRVATQLSLPD-----NISYTVSIGYATSSQEDLHFPTLLALADE 360

Query: 243 ALYVAKKSGRNRVVCF 258
           ALY AK SGRNR   +
Sbjct: 361 ALYRAKASGRNRTEQY 376


>gi|254506538|ref|ZP_05118679.1| signal transduction protein [Vibrio parahaemolyticus 16]
 gi|219550411|gb|EED27395.1| signal transduction protein [Vibrio parahaemolyticus 16]
          Length = 829

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 17/191 (8%)

Query: 87  GSILKELFISYNRISQ-------LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
            ++   L  +Y+ +++       L+  D L+ L N       L           +K  ++
Sbjct: 366 NNMASRLAEAYSDLNEEKKNFDFLAHHDPLTHLANRLLATKKLAEQIEDSEQSGQKFLLL 425

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           + DID FK +ND+ GH  GD ++  ++D L        FV R+GG+EF      +   + 
Sbjct: 426 YLDIDEFKTVNDSLGHAAGDNLLVKIADILREQVEGHGFVARMGGDEFMIVIDNADLNQG 485

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
             +A+ L   +           +I ++ S GI E   H     T++  AD A+Y AK++G
Sbjct: 486 KTIAHKLNLALR--MPYHIEERTIFVSASIGICEYPTHGHNGETLVRNADTAMYCAKRNG 543

Query: 252 RNRVVCFSDIE 262
           R++   ++D  
Sbjct: 544 RDQFRVYTDEM 554


>gi|156308342|ref|XP_001617651.1| hypothetical protein NEMVEDRAFT_v1g49651 [Nematostella vectensis]
 gi|156195030|gb|EDO25551.1| predicted protein [Nematostella vectensis]
          Length = 156

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 9/156 (5%)

Query: 107 DCLSGLLN----HSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N      A    +      L   +++  D+D+FKQ+ND +GH  G++V+   +
Sbjct: 1   DPLTSLYNVRFFRQALDQEIERTQRTLISTAVMMIDLDHFKQVNDTYGHEAGNRVLRQTA 60

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +           R GGEEF      +    AA +A  LR+ IE + + +     I +T
Sbjct: 61  RLIRDSTRRLDIQCRYGGEEFVVILPTTELMLAAHVAERLRESIEATPVFLDDDNHISVT 120

Query: 220 ISAGIAERCHKEPI--STIIYRADQALYVAKKSGRN 253
            S G+A      P+  + ++  AD+ LY AK+ GRN
Sbjct: 121 ASIGLALHSADAPLTAAELVAAADEQLYRAKEQGRN 156


>gi|260220639|emb|CBA28380.1| hypothetical protein Csp_A06980 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 774

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 13/180 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           S + E   S N + QL+  D L+GL N      F++   +    L+++  D+D FK IND
Sbjct: 332 SDVTEKVQSTNLLRQLAHTDSLTGLTNRFKLREFLTEKVAGKHPLALLSIDLDRFKAIND 391

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND----L 199
             GH VGD V+  ++ +L    G    + RLGG+EFA   +     Q+A  L       L
Sbjct: 392 RHGHSVGDDVLRLIAQRLRQQLGPQTMIARLGGDEFAVVLVEPGDIQQAPTLGRRVVHLL 451

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++ ++ S   ++ G S+ +TIS G         +  ++ +AD ALY AK +GR + V ++
Sbjct: 452 QEPLDISVRRLTVGGSVGLTISRGDVV-----TLDELMVQADIALYAAKDAGRGQCVAYT 506


>gi|255093223|ref|ZP_05322701.1| putative signaling protein [Clostridium difficile CIP 107932]
          Length = 284

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 71/284 (25%), Positives = 116/284 (40%), Gaps = 35/284 (12%)

Query: 8   FLSIWLCHEKNLESF-----SPHTFMIYFSIFFSI--FIATVIFIANIFLFYIGLTPFYG 60
           F  +W C    L+       S  ++++  +  FS+  F  +VI     FLF     P  G
Sbjct: 3   FFCLWGCVITLLDQLGGNDLSVFSYIMLAAAAFSVLKFGESVIVFGGCFLFLNLFLP--G 60

Query: 61  LEYILVENLSLVIISITISLLLGYISGSILKELF----------ISYNRISQLSR----- 105
           ++ I     S ++ +  I+ L  ++S  + +               Y  IS ++      
Sbjct: 61  IQTIPGNEFSNIVNTFFITSLAIFVSTMLYRNRVFTYYDKLLISQQYEEISHINNLLNDK 120

Query: 106 --IDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
              D L+ + N       L          E ++ +  DIDYFKQ NDN+GH  GD  +  
Sbjct: 121 VMTDDLTKMNNRRYLEDILQKKLISHANQEPITGMMIDIDYFKQFNDNYGHQKGDYCLQN 180

Query: 158 LSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216
           ++  ++           R GGEEF        E +A + +  LRKIIE+        P  
Sbjct: 181 IAKVILDFTSSENEHAIRYGGEEFFICIFNCDETDAKLKSECLRKIIESCNFERDDVPLK 240

Query: 217 HITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +T+S G+  +       ++  I   D+ALY AK+ GRN V  +
Sbjct: 241 CVTVSIGVYTKKIEKAITLNEFISNCDKALYTAKEQGRNCVAFY 284


>gi|307155030|ref|YP_003890414.1| PAS/PAC sensors-containing diguanylate cyclase/phosphodiesterase
           [Cyanothece sp. PCC 7822]
 gi|306985258|gb|ADN17139.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7822]
          Length = 1188

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 12/186 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYF 139
           S + E      ++   +  D L+ L N    +  L    +K         +++F D+D F
Sbjct: 740 SDITERKSFTEQLQYNAYHDPLTSLPNRIFLLEKLEEALKKNQNRENIFFAVLFLDLDDF 799

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K +ND+ GH VGD+++  ++ +L      P  + R GG+EF        S  E    A  
Sbjct: 800 KVVNDSLGHIVGDQLLIAIAQRLKTSLSVPHTLARFGGDEFTILLEEIQSTDEPLKAAQK 859

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           +    + +Q    +G  + I+ S GIA           I+  AD A+Y AK+ G+     
Sbjct: 860 IHN--DLTQPYDLNGQQVFISTSIGIALSDPSYIHPQEILRDADTAMYQAKRWGKGGYAV 917

Query: 258 FSDIEN 263
           F    +
Sbjct: 918 FDQQMH 923


>gi|77463977|ref|YP_353481.1| periplasmic sensor diguanylate cyclase (GGDEF) [Rhodobacter
           sphaeroides 2.4.1]
 gi|77388395|gb|ABA79580.1| periplasmic sensor diguanylate cyclase (GGDEF) [Rhodobacter
           sphaeroides 2.4.1]
          Length = 347

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 59/258 (22%), Positives = 109/258 (42%), Gaps = 24/258 (9%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE 67
             S+W    + L      T ++  ++  S+ +  + ++           P    + + V 
Sbjct: 102 MGSLWPVLRRRL-GLGHFTGLVLLAVMISLPLVLLAWL-----------PVGRTDSLEVL 149

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGSY 125
              LV++++T +L+ G     + +E   +     +   ++ D L+G+LN  +F       
Sbjct: 150 AAILVLLNLTGALVFGTF---LQRERAAAQRERTLLTETQTDPLTGVLNRRSFERRFAEA 206

Query: 126 N-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
           +        +++  DID+FK++ND  GH  GD V+  ++++L         V RLGGEEF
Sbjct: 207 DSLARSRGTALMIVDIDHFKRVNDIHGHEAGDHVLRAMAERLRRAVRPGDSVIRLGGEEF 266

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYR 239
           A         EA   A  L++++      I     + +T+S G          +      
Sbjct: 267 AVLMPDVDAPEAGRAAERLQRML-TMSCRIGDLTRVDVTVSIGATHLPPGRVDLGEASRT 325

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK+ GR R + 
Sbjct: 326 ADGALYRAKREGRARSIF 343


>gi|67923074|ref|ZP_00516566.1| GGDEF [Crocosphaera watsonii WH 8501]
 gi|67855087|gb|EAM50354.1| GGDEF [Crocosphaera watsonii WH 8501]
          Length = 373

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 11/176 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
            +L  +   + QL+ +D L  + N   F   L     +       LS++  D+DYFKQ N
Sbjct: 193 TKLKEANEELEQLAILDPLLPIANRRRFDEYLKQEWARMCRERRYLSLILADVDYFKQYN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D +GH  GD+ +  ++  +      P   V R GGEE       ++   A  +A  +++ 
Sbjct: 253 DKYGHQAGDRCLIAIAKTIQKSLRRPADLVCRYGGEELVIVLPNTNPDGAIKVAETIQEE 312

Query: 203 IENSQI-NISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255
           I   +I +  S  S ++TIS G+A          S +I  AD++LY AK +GRN  
Sbjct: 313 IALLKIPHFRSKISDYVTISMGLASMIPIKGVSPSMLINVADKSLYQAKNNGRNCF 368


>gi|307727099|ref|YP_003910312.1| diguanylate cyclase [Burkholderia sp. CCGE1003]
 gi|307587624|gb|ADN61021.1| diguanylate cyclase [Burkholderia sp. CCGE1003]
          Length = 531

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 14/200 (7%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
            L+   + + +S LL Y     L+    +   + +L+  D L+GL N     + L     
Sbjct: 322 TLAFGAVFVLVSWLLAYALHGKLR----AQAALVRLAATDPLTGLSNRRVLDNRLDEEWR 377

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEE 179
                 + LS +F DID+FK+ ND +GH  GD+ ++ +++ +          V R GGEE
Sbjct: 378 RARRTGQPLSALFIDIDHFKRFNDTYGHASGDEALSAVAECISSTVRRAVDLVARYGGEE 437

Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTII 237
           FA     +S   A  +A  +R+ ++   I       + +T+S G A            ++
Sbjct: 438 FAVILPDTSADGARAVAEKIRRSVQAQDILHGGADPVTVTVSVGCATIVPAQGANALDLL 497

Query: 238 YRADQALYVAKKSGRNRVVC 257
             AD+ LYVAK +GRNRV C
Sbjct: 498 AAADRQLYVAKAAGRNRVAC 517


>gi|167623669|ref|YP_001673963.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167353691|gb|ABZ76304.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 341

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 89/177 (50%), Gaps = 6/177 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS----YNEKLSIVFFDIDYFKQ 141
           + S +  L +   +       D L+  LN  AF   L      + + L ++  DID+FK 
Sbjct: 161 AQSEIDTLKLQLKQSEHEMHFDALTNSLNRRAFNKDLKGIIELHPQGLCLIIADIDHFKV 220

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            ND +GH +GD+V+  ++ +L         + R GGEEFA     S    A  LA  +R+
Sbjct: 221 FNDTYGHQLGDQVLKAVTKRLTEACQDGTKLYRFGGEEFALIVPKSQLGRARQLAESMRR 280

Query: 202 IIENSQI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +E   + +   G +I +I+ S G+AE    +  + +I RAD+ LY AK+ GRNRV+
Sbjct: 281 SLEKLILKDRRKGDTINNISASFGVAEYQLNDTDNQLIERADKQLYEAKRLGRNRVM 337


>gi|152988780|ref|YP_001349552.1| putative sensor protein [Pseudomonas aeruginosa PA7]
 gi|150963938|gb|ABR85963.1| membrane protein, putative [Pseudomonas aeruginosa PA7]
          Length = 1105

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 81/189 (42%), Gaps = 14/189 (7%)

Query: 83  GYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130
           G I G++L      +       +S  +  D L+GL N + F   L            + +
Sbjct: 645 GEIIGTVLVFQNVTKARAMQRELSYHASHDALTGLFNRTKFEEELRRALANAQERASQHA 704

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           + F D+D FK +ND+ GH  GD ++  LS  L         + RLGG+EF          
Sbjct: 705 LCFIDLDRFKVVNDSAGHAAGDMLLRELSRILADRTRASDTLARLGGDEFGLLLFDCDLA 764

Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKK 249
            A  +A+ L + I + +     G    +  S GI A        S ++ +AD A Y AK 
Sbjct: 765 VAEEVASKLIEQICSVRFPW-EGRVYDVGASIGITALTATSRSTSELMSQADVACYAAKH 823

Query: 250 SGRNRVVCF 258
           +GRNRV  +
Sbjct: 824 AGRNRVSVY 832


>gi|269965387|ref|ZP_06179507.1| ScrC (sensory box/GGDEF family protein) [Vibrio alginolyticus 40B]
 gi|269830033|gb|EEZ84262.1| ScrC (sensory box/GGDEF family protein) [Vibrio alginolyticus 40B]
          Length = 776

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 81/184 (44%), Gaps = 11/184 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142
           ++    S   ++  ++ D L+ L N S     L            K+ ++F D+D+FKQI
Sbjct: 335 IERRKASEKELAFQAKYDTLTNLPNRSYGSERLALELIRASRSGSKVLVMFIDLDHFKQI 394

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRK 201
           ND+ GH VGD+++   + +L  V      + R+GG+EF            A  +A+ +  
Sbjct: 395 NDSMGHFVGDEILKLSAQRLYQVARKTDLLARIGGDEFLLVIPDLPDNDTAKRVASSVLS 454

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260
              +    + +     ++ S G++      +    ++  AD A+Y AK+ GR+    ++ 
Sbjct: 455 AFND--PFVWNNHEFFLSSSVGMSVFPDDGDNAEQLLACADMAMYRAKQDGRDGFCFYNH 512

Query: 261 IENN 264
             N 
Sbjct: 513 NMNQ 516


>gi|116873347|ref|YP_850128.1| GGDEF domain-containing protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116742225|emb|CAK21349.1| GGDEF domain protein [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 375

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 15/234 (6%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYIL--VENLSLVIISITISLLLGYISGSILKE 92
           FS FIA +I      L+Y      +  E IL   E +   ++    +LL+ Y    I K 
Sbjct: 140 FSKFIALIILNFPAILYYFVNN--FEQERILRGFEIIEYFLLFFVTALLVFYACNYIDKS 197

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDN 145
             +  N +++ +  D L+ L N   F               + LS+   DID+FK+IND 
Sbjct: 198 NLVIQN-LTETAMTDSLTNLPNMRFFTQQFGWIFNKAQKRKKALSLFIIDIDHFKEINDF 256

Query: 146 FGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            GH  G+ V+A  S  L    F       R+GGEEFA        ++AA++A+ LR+ IE
Sbjct: 257 HGHQAGNTVLAQFSTILKNRTFPPRTMFARIGGEEFAVLLQNVGTEQAALIADFLREEIE 316

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
            ++    +  S ++T+S G+A          ++   ADQALY AK++GRN++  
Sbjct: 317 RAKFPY-NPASGNVTVSIGVAATNGNFATTESLFEAADQALYQAKQNGRNQIAI 369


>gi|28867537|ref|NP_790156.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28850772|gb|AAO53851.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 643

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 11/183 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S +  +  S   ++QL   D L+ L N       +              +++  D+D+FK
Sbjct: 196 SDITAIKRSERELAQLIHFDALTDLPNRLLLTDRISQALTSARASKRGCALLLIDLDHFK 255

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            IND+ GH VGD V+  ++++L  + G    + R GG+EFA      S+   AA LA  +
Sbjct: 256 NINDSLGHNVGDDVLKAVAERLKGLCGNETTLARPGGDEFALLVKNCSQVVRAAALAQQV 315

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            ++++     + +   + +T S GI+      +    ++  AD AL+ AK  GR+    +
Sbjct: 316 SEVLKA--PFVIAAHQLFVTASMGISLYPGDAQSAEQLLRNADSALFKAKSEGRDCYALY 373

Query: 259 SDI 261
           ++ 
Sbjct: 374 TEE 376


>gi|149184365|ref|ZP_01862683.1| response regulator [Erythrobacter sp. SD-21]
 gi|148831685|gb|EDL50118.1| response regulator [Erythrobacter sp. SD-21]
          Length = 209

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 81/177 (45%), Gaps = 6/177 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--GSYNEKLSIVFFDIDYFKQIN 143
           +  + ++L  +      L   D L+GL N          G   +   ++  D+D FK IN
Sbjct: 30  NRQLSEDLSDALAHAEYLGVRDPLTGLYNRRKLFEERDDGQEGQLRQVLMIDLDRFKSIN 89

Query: 144 DNFGHPVGDKVIAFLSDQLVVV----FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           D FGH  GD+V+   +  +        GT     RLGGEEF A       ++A  +A +L
Sbjct: 90  DRFGHAAGDRVLVATASAIRNCLERMDGTSDLAFRLGGEEFVAILDSEDFEKARSIAEEL 149

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           R+ I    ++ S   S   + S G+A     E +  +++RAD A Y AK  GRNRV 
Sbjct: 150 RRDIARIALDESHTGSFETSASIGLASWHPGEKLDDVLHRADAACYKAKNEGRNRVR 206


>gi|91776819|ref|YP_546575.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacillus flagellatus KT]
 gi|91710806|gb|ABE50734.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacillus flagellatus KT]
          Length = 747

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 82/198 (41%), Gaps = 14/198 (7%)

Query: 78  ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS 130
           + LL G+     L E     + I  L+  D L+ L N    +  L         +    +
Sbjct: 289 LPLLTGFF--RDLTERRKVESEIRNLAFYDALTTLPNRRLLLDRLQQAIAASVRHGRHGA 346

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           ++F D+D FK +ND+ GH +GD ++  ++ +L         V RLGG+EF       S  
Sbjct: 347 VLFIDLDNFKALNDSRGHDIGDLLLVEVARRLRQCVRNEDTVARLGGDEFVIVLEDLSLN 406

Query: 191 EAAILAND---LRKIIENSQINISSGP-SIHITISAGIAERCHK-EPISTIIYRADQALY 245
               +A      +K++E        G    H + S GI         +  ++ R+D A+Y
Sbjct: 407 LEQAIAQTRQVAQKVLEIINHPYQLGEIEHHNSSSIGIVLFNGNFVSMEELLKRSDTAMY 466

Query: 246 VAKKSGRNRVVCFSDIEN 263
            AK +GRN +  F     
Sbjct: 467 EAKAAGRNTLRFFDPAMQ 484


>gi|26987301|ref|NP_742726.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas putida KT2440]
 gi|24981947|gb|AAN66190.1|AE016246_7 response regulator [Pseudomonas putida KT2440]
          Length = 451

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 87/183 (47%), Gaps = 11/183 (6%)

Query: 84  YISGSILKELFISYNRISQL-SR--IDCLSGLLNHSAFIS-------SLGSYNEKLSIVF 133
           + S  ++  +     R   L +R   D L+GL NH+  +              + LS   
Sbjct: 266 FRSRHLITTVRNRAARARHLKARMVRDSLTGLYNHTHILQLLEDCSFRARREQQPLSFAM 325

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK+IND  GHP+GD+VI  L+  L        F+GR GGEEFA     ++   A 
Sbjct: 326 LDIDHFKKINDRHGHPMGDRVIKSLALFLKQRLRKTDFIGRYGGEEFAIVMPNTALDAAH 385

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            + +++R+      +  +    +  T SAG+ +        T+   AD+ALY AK +GRN
Sbjct: 386 KVLDEIRRRFAEI-LYPAQPRDLQCTFSAGVVQLDEGLDALTMASAADEALYRAKHAGRN 444

Query: 254 RVV 256
            VV
Sbjct: 445 CVV 447


>gi|325288309|ref|YP_004264490.1| diguanylate cyclase [Syntrophobotulus glycolicus DSM 8271]
 gi|324963710|gb|ADY54489.1| diguanylate cyclase [Syntrophobotulus glycolicus DSM 8271]
          Length = 369

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 75/279 (26%), Positives = 116/279 (41%), Gaps = 36/279 (12%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIF-----IATVIFIANIFLFYIGLTPFYGLE 62
           FLS +L   ++L       F IY  +   +F     +A   F+A  ++    L     L 
Sbjct: 86  FLSAFLYFARDLFPILAQMFCIYLVLLIILFQHKRPLACSSFVALCYVSVAVLQDRTALF 145

Query: 63  YILVENLSLVIISITISLLLGYISGSILKE--------------LFISYNRISQLSRIDC 108
                   +VI+ I +  LLGYI G +  E              L    + ++++   D 
Sbjct: 146 T------PVVIVQILLFFLLGYIMGVVNHEINRLVGRLCYMNEDLEHKNSLLNEMVSKDY 199

Query: 109 LSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+ L NH  F       I+        LS+   DID FK+IND +GH  GD+V+  +S  
Sbjct: 200 LTSLYNHKTFYIYYKEIITRSYESQNSLSLALLDIDNFKKINDTYGHLAGDQVLQKISAL 259

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +           R GGEEFA     +  +    +   +R +I   +  +     I +TIS
Sbjct: 260 IQANVRKNDVAARYGGEEFAIIFPDTLPEIGNAVCERIRNLIAGHEF-VFDNQIIQVTIS 318

Query: 222 AGIAERCHKEPI---STIIYRADQALYVAKKSGRNRVVC 257
            G+A     EP    + +    DQ LY AK  G+NR++C
Sbjct: 319 GGVAGGICMEPRYKNNELFTCVDQLLYQAKGQGKNRILC 357


>gi|304410261|ref|ZP_07391880.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Shewanella baltica OS183]
 gi|307302028|ref|ZP_07581786.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Shewanella baltica BA175]
 gi|304351670|gb|EFM16069.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Shewanella baltica OS183]
 gi|306914066|gb|EFN44487.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Shewanella baltica BA175]
          Length = 684

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 87/189 (46%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
             IL +   + +++ +++  D L+GL N +  + ++         +    +++F D+D F
Sbjct: 232 NQILIQFSQTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRSRVHKRSFALMFIDLDRF 291

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND+ GH +GD+ +A ++  L    G    V RLGG+EF   A    +  +AA   + 
Sbjct: 292 KNINDSLGHALGDQFLARIARILERFVGDKGTVSRLGGDEFVILADTVHTPDQAADFVDK 351

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L   + N  I ++   +IH   S GI+           +I  AD A+Y AK +G N+   
Sbjct: 352 LLTQL-NVPIQLNE-HAIHPAASIGISIYPEDGNSAEDLIRHADIAMYSAKAAGSNQWAF 409

Query: 258 FSDIENNTC 266
           F        
Sbjct: 410 FKQQMTERA 418


>gi|317053094|ref|YP_004119448.1| diguanylate cyclase [Pantoea sp. At-9b]
 gi|316953421|gb|ADU72892.1| diguanylate cyclase [Pantoea sp. At-9b]
          Length = 459

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 7/156 (4%)

Query: 107 DCLSGLLNHSAF------ISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ LLN            SL   N   LS+   D+D+FK++ND +GH VGD+ +  ++
Sbjct: 301 DALTNLLNKRYLPIVLKHEVSLAMENHLPLSVAIIDVDFFKKVNDEWGHSVGDRALTHIA 360

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + L        +V R GGEEF    + +   EA  L   +R+I+ ++     SG  + +T
Sbjct: 361 NLLSDNIRASDYVFRYGGEEFMIVLVEAGRSEAYTLLERIRRIVSSTPFEAVSGKILPLT 420

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S G          + ++ RAD ALY AK++GRNR+
Sbjct: 421 VSIGYTVHDGHPDYNQLLNRADVALYQAKRNGRNRI 456


>gi|88704424|ref|ZP_01102138.1| membrane protein containing GGDEF domain [Congregibacter litoralis
           KT71]
 gi|88701475|gb|EAQ98580.1| membrane protein containing GGDEF domain [Congregibacter litoralis
           KT71]
          Length = 399

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 61/212 (28%), Positives = 100/212 (47%), Gaps = 14/212 (6%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHS 116
           G+       LSL      ++  LG I+ S+     +L  +  +++ L+ ID L+GL N  
Sbjct: 187 GIHDTFRRMLSLNWQQEAMARELGQITNSLRDRNLQLQEARRQLTDLANIDELTGLGNRR 246

Query: 117 AFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGT 168
               +L          +  LS+V  D+D+FK+ ND +GHP GD+V+  + D +       
Sbjct: 247 LVNQTLREEVNRARRSHGWLSVVLIDVDFFKKYNDTYGHPAGDEVLRRIGDIMQRATARA 306

Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAER 227
                R GGEEF     G+   +A   A  L++++    I  S+   S  I+IS G+   
Sbjct: 307 GEVAARYGGEEFILVLPGAKAADALRTAERLKRLVYEENIPHSASEVSDRISISQGVLSI 366

Query: 228 CHKEPIS--TIIYRADQALYVAKKSGRNRVVC 257
              E +    ++ RAD ALY AK+ GR+++  
Sbjct: 367 MPDEDVDPGVLVDRADAALYTAKREGRDQIAV 398


>gi|298291384|ref|YP_003693323.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Starkeya novella DSM 506]
 gi|296927895|gb|ADH88704.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Starkeya novella DSM 506]
          Length = 761

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 12/195 (6%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVF 133
           L  +     + E   +  R+  ++  D L+GL N       L +   +       + ++ 
Sbjct: 294 LRAFGMLQDVTEQKEAEQRMWHMANHDALTGLPNRGLMRERLEAALRRSRRSRRYVGVLL 353

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK +ND  GH  GD ++   + +L    G    V RLGG+EF            A
Sbjct: 354 VDLDQFKDVNDTLGHDAGDALLVEAAQRLGGCIGDVDMVARLGGDEFIVLLTRMDSPTDA 413

Query: 194 ILANDLRKIIENSQINISSGPSI-HITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
           ++A   +  +   ++  S   ++     S GIA    H    ST++  AD ALY AK +G
Sbjct: 414 MVAA--QHALSALRLPFSYRRTVLSCRGSIGIAVAPEHGTDPSTLLKNADIALYRAKAAG 471

Query: 252 RNRVVCFSDIENNTC 266
           R  V    D+     
Sbjct: 472 RG-VAVEYDMRMQQA 485


>gi|156975654|ref|YP_001446561.1| hypothetical protein VIBHAR_03387 [Vibrio harveyi ATCC BAA-1116]
 gi|156527248|gb|ABU72334.1| hypothetical protein VIBHAR_03387 [Vibrio harveyi ATCC BAA-1116]
          Length = 679

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+ L N   F   L         L + + DID FK IND+ GH +GDKVI  +S 
Sbjct: 253 AHIDSLTKLYNRFGFTKRLEQLIKSQTPLLVFYLDIDNFKNINDSLGHHIGDKVIQEVSA 312

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           +L         +G LGG+EF        + + A IL+  +  +I  +Q       S  + 
Sbjct: 313 RLKRSLPNQAIIGHLGGDEFGIILPEPENTRMAEILSERIISLI--NQPFDLHHFSKRLA 370

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +      +    ++  AD A+Y AK  GRNR++ F+D  N   
Sbjct: 371 CSIGSVRYPEDGQDARILLQNADTAMYEAKDRGRNRLIKFNDQMNKEA 418


>gi|148555510|ref|YP_001263092.1| diguanylate cyclase [Sphingomonas wittichii RW1]
 gi|148500700|gb|ABQ68954.1| diguanylate cyclase [Sphingomonas wittichii RW1]
          Length = 343

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 13/180 (7%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
            ++ K+L  ++ +    +  D L+GL N  A    L             L++   DID+F
Sbjct: 166 SAMRKDLAAAHRK----ANSDPLTGLPNRRALDQHLRGAFENARRAATPLALAICDIDHF 221

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQ ND  GH +GD+VI F++  L       +FV R GGEEF       +  +A    + +
Sbjct: 222 KQFNDTHGHQIGDEVIKFVASSLGRAASGDVFVARYGGEEFVMVFERGAAAKAMATLDKI 281

Query: 200 RKIIENSQINI-SSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R  I   ++ +  +G S+  ++ S G+A    ++   +I+ RAD ALY AK+ GRNR+  
Sbjct: 282 RAAIAARELKVTHTGQSLGRLSFSGGLAALDLQDSPGSILKRADAALYRAKQDGRNRIHA 341


>gi|114778329|ref|ZP_01453188.1| Signaling protein with a GGDEF domain [Mariprofundus ferrooxydans
           PV-1]
 gi|114551431|gb|EAU53987.1| Signaling protein with a GGDEF domain [Mariprofundus ferrooxydans
           PV-1]
          Length = 308

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 9/176 (5%)

Query: 93  LFISYNRIS-QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144
           LF   + I   L+ +D L+G  N    ++ L    E         SI   D+D+FKQ+ND
Sbjct: 129 LFSLKHEIEGDLNNLDPLTGAYNRFGMMAFLHEQQELVARGVNSCSIAMLDLDFFKQVND 188

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH +GD V+  ++  L+        + R GGEEF A    ++ + A ++A  +RK +E
Sbjct: 189 QYGHKMGDHVLTSIASTLLKGLRPYDKLFRYGGEEFVAVFPNTAVESALLVAERVRKYVE 248

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           ++ I I   P + IT+S GIA       +   + +AD A+Y AK++GRN+V  + +
Sbjct: 249 DTIIEIDKLP-VRITVSVGIAAIDANTSVEISVEQADIAMYTAKQNGRNQVKLWEN 303


>gi|77362186|ref|YP_341760.1| GGDEF/GAF domain-containing protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76877097|emb|CAI89314.1| putative protein with GGDEF motif and GAF domain [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 479

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 11/181 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143
           ++L  +  ++S L   D L+ + N   F  +L S  ++       LS++  DID+FK+ N
Sbjct: 297 QQLITANQKLSLLVNTDGLTNIANRRCFDETLKSEIQRCARNKHSLSLIMCDIDFFKRYN 356

Query: 144 DNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           DN+GH  GD  +  ++  L  +         R GGEEFA      +  E    A  L++ 
Sbjct: 357 DNYGHQKGDDALKQVAKTLNKLCRREGDLAARYGGEEFAIILPSLNAAECHQFALLLQQK 416

Query: 203 IENSQINISS-GPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I    I  S    +  +T+S G             TII  AD ALY AK++GRN++  F 
Sbjct: 417 IALLNIVHSDSSVAKTLTLSVGFYSTYPTKNTRPETIINNADAALYEAKETGRNKICQFF 476

Query: 260 D 260
           +
Sbjct: 477 E 477


>gi|152964362|ref|YP_001360146.1| diguanylate cyclase with PAS/PAC sensor [Kineococcus radiotolerans
           SRS30216]
 gi|151358879|gb|ABS01882.1| diguanylate cyclase with PAS/PAC sensor [Kineococcus radiotolerans
           SRS30216]
          Length = 888

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 18/201 (8%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------ 123
           +LV +     LLL  +    + E       +   +  D L+GL N + F+  L       
Sbjct: 673 ALVQLQGADPLLLCLV--EDVTERRAVQAELHHRALHDALTGLANRTLFLDRLEHAVAAS 730

Query: 124 -SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
               E + +++ D+D FK +ND  GH  GD+++  ++  L         V RLGG+EFA 
Sbjct: 731 SRGPEGVGVLYVDLDGFKAVNDTAGHQAGDELLVQVARLLSGCVRPGDTVARLGGDEFAV 790

Query: 183 AALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-----ISTI 236
              G+S E +  ++   +   +         G    +  S G A  C  +P     +  +
Sbjct: 791 VCAGASAEADLVVIGQRILDALAA--PLRVRGHDAVVGASIG-ARWCPGDPATPVRVEQV 847

Query: 237 IYRADQALYVAKKSGRNRVVC 257
           +  AD+A+Y AK++G+ RVV 
Sbjct: 848 VRDADEAMYEAKRAGKGRVVV 868


>gi|152966541|ref|YP_001362325.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151361058|gb|ABS04061.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 797

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 101/243 (41%), Gaps = 21/243 (8%)

Query: 24  PHTFMIYFSIFFSIFIATVIFIA---NIFLFYIGLTPFYGLEYILVENLSLVIISITISL 80
           P T     +  F + +A++  +A    I     G     G+   ++  LS+ +  + +  
Sbjct: 279 PATTAAPTTGSFVVLLASIAVLAAAGTIGADLPGDAVRAGVVAGVLGGLSVSVRGVQLIR 338

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDID 137
           LL  +  +             + +  D L+GL N  A   +L  +      +S++  D+D
Sbjct: 339 LLADLVTT------------RREALTDDLTGLANRRALDRTLDEHLRTGRPVSLMLIDLD 386

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK++ND FGH VGD+++      L  V        RLGG+EFA    GSS +EA  L  
Sbjct: 387 GFKEVNDRFGHAVGDELLRRAGALLQRVSPPQAVSARLGGDEFAIVLPGSSTEEALALFA 446

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            L    +     +  G  +    S GIA     E    ++  AD A+Y AK +G   V  
Sbjct: 447 VLADATQA--PVLIDGRRLLARASVGIATAA-GETPEQLLRHADAAMYRAKTAGGAGVAV 503

Query: 258 FSD 260
             +
Sbjct: 504 HDE 506


>gi|304394293|ref|ZP_07376216.1| diguanylate cyclase [Ahrensia sp. R2A130]
 gi|303293733|gb|EFL88110.1| diguanylate cyclase [Ahrensia sp. R2A130]
          Length = 378

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 62/237 (26%), Positives = 108/237 (45%), Gaps = 17/237 (7%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS 86
           F +   +   +++   + +AN  L    L     +E          ++ I +S LL   +
Sbjct: 138 FPVERVLVIVLYVVAALLLANPRLLSSLLPNLLPMEIAYNTWPIYAVVWIIVSQLLAGTT 197

Query: 87  GSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQI 142
            ++ ++++ +S     Q +  D L+GL N  AF  ++     K    ++V  DID+FK+I
Sbjct: 198 IALSMRDVIVSA---RQEAETDALTGLANRRAFDRAIQRQGRKDDLAALVMIDIDHFKRI 254

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND+FGH  GD+ IA ++  +           RLGGEEFA          A+ +A ++   
Sbjct: 255 NDSFGHDEGDRCIALVAGLIAQAAPEGTHAVRLGGEEFAVLVNDGGVATASAVAQNIHNN 314

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I  +         ++ T+S G++E         +  RAD+ALY AK  GRN+   + 
Sbjct: 315 IRQATRP------LNFTVSIGVSEGPR----DVLYKRADEALYQAKNDGRNKTCVWE 361


>gi|229515566|ref|ZP_04405025.1| GGDEF family protein [Vibrio cholerae TMA 21]
 gi|229347335|gb|EEO12295.1| GGDEF family protein [Vibrio cholerae TMA 21]
          Length = 443

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 18/230 (7%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102
           +F+A + ++ +       LE  +  N   V+ +      L  ++ S    L     +  +
Sbjct: 219 LFLAMLIMWAVAGAWLSALE--IRRNRREVLRARIRQEHLQRLNHS----LHEQNIKFVE 272

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++  D L+G +N       L             +S++F DIDYFKQ+ND +GH +GD ++
Sbjct: 273 MAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDLL 332

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +  +         + R GGEEF      ++ ++A  LA  LR  I +          
Sbjct: 333 REFALVISREIRESDKLVRWGGEEFVVFCAQTTLEQAIELAERLRAKIADHSWIHGGA-- 390

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             IT S GIA+    E I+  + RAD+ALY AK+ GRNR+     +   +
Sbjct: 391 --ITCSIGIAQM-GDERITETVSRADEALYRAKRLGRNRIEVHYGLMAKS 437


>gi|104782021|ref|YP_608519.1| diguanylate cyclase/phosphodiesterase [Pseudomonas entomophila L48]
 gi|95111008|emb|CAK15728.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) [Pseudomonas entomophila L48]
          Length = 744

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 22/225 (9%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102
           +F + +FLF +  T  +          SL +  +     L  +     +EL     ++ +
Sbjct: 270 LFASPLFLFALSCTGLF----------SLFVAQLNRKQRLLELRN---RELRQYQAQLER 316

Query: 103 LSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           L+  D ++GL N   F   L      +  L+++  DID FKQ+ND+ GHP+GD ++   +
Sbjct: 317 LAHYDTITGLPNRVLFQQQLTEAILRDHGLAVLMLDIDGFKQVNDSLGHPMGDLLLQQAT 376

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHI 218
            + +    +   V RLGG+EF     G+  Q    + + +R ++   Q     +G +  +
Sbjct: 377 ARFLQELHSQDRVCRLGGDEFVFMLQGAQGQ----VQHQIRALLRCLQRPFDLNGNATLV 432

Query: 219 TISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           T S G+A    H E   +++  AD A+Y AK+SGRN    +    
Sbjct: 433 TGSIGLAWSPQHGEDADSLLRHADTAMYAAKESGRNAWRPYHPDM 477


>gi|24373752|ref|NP_717795.1| GGDEF family protein [Shewanella oneidensis MR-1]
 gi|24348133|gb|AAN55239.1|AE015662_1 GGDEF family protein [Shewanella oneidensis MR-1]
          Length = 341

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 6/177 (3%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG----SYNEKLSIVFFDIDYFKQ 141
           + + +  L     +  +    D L+G LN  AF + +        E   ++  DID+FK 
Sbjct: 161 AQTEIDALKQKLEKTEKDVLYDALTGCLNRRAFDADIAGMIAQAPEGTCLILVDIDHFKA 220

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            NDN+GH +GD+V+  ++ +L         + R GGEEFA     S  +    LA  +R+
Sbjct: 221 FNDNYGHQLGDQVLKAVAKRLQEACRDGSKLYRFGGEEFAIIVPKSQLRITRQLAEAMRR 280

Query: 202 IIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +E   +       +  +IT S G+A+   ++ +  +I + D+ LY AK+ GRNRV+
Sbjct: 281 GLEKLCLKDRRKDQLVDNITASFGVAQWQERQSVVQLIEKTDKLLYEAKRLGRNRVM 337


>gi|332141762|ref|YP_004427500.1| putative diguanylate cyclase/phosphodiesterase domain 2 (EAL)
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551784|gb|AEA98502.1| putative diguanylate cyclase/phosphodiesterase domain 2 (EAL)
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 630

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 60/274 (21%), Positives = 111/274 (40%), Gaps = 32/274 (11%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYIL-------VENLSLVI 73
           +   +  +I F+            ++ + L  IGLT       +          +L  VI
Sbjct: 98  AMLGYPGVIIFAALLGGVALFGTVLSLVLLQCIGLTWLIMHGVVAPHPPVLSWSHLLFVI 157

Query: 74  ISITISLLLGYISGSILKELFISYNR-----------ISQLSRIDCLSGLLNH----SAF 118
           +   ++    ++    ++ L  S +R           I  L+  D L+ L N       F
Sbjct: 158 VIFVVTGFSVFVLVQDIRRLMASLHREYTKVEQNRAHIQHLAHHDPLTNLPNRVMGERLF 217

Query: 119 ISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
              L    E   +L+++F D+D FK +ND  GH  GD+ +  +S  +         + R 
Sbjct: 218 NEKLRESEESGLQLAVLFIDLDNFKPVNDALGHAAGDRFLQKISQTITDNLSANECLIRF 277

Query: 176 GGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PI 233
           GG+EF   A    +  +   L  +L +   +S+  +     I ++ S G+A+  +     
Sbjct: 278 GGDEFIVLAAQIKTRSQIENLCQNLIQWC-SSEFEVLQTK-IVVSGSIGVAQAPYDGVKF 335

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS---DIENN 264
             +  +AD A+Y AK++GRNR   +    D E++
Sbjct: 336 KQLCRKADIAMYEAKRNGRNRFEFYDVRFDEESD 369


>gi|330806854|ref|YP_004351316.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327374962|gb|AEA66312.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 635

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 87/183 (47%), Gaps = 11/183 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           S +  +  S + ++ L+  D L+GL N   F             +    +++  D+D+FK
Sbjct: 192 SDISAIKDSEHELAYLAHHDPLTGLPNRLLFSDRTEQALASAQLHKRGCALLLLDLDHFK 251

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDL 199
            IND+ GH VGD+++  ++++   +F   + + RLGG+EFA      S+  +AA LA  +
Sbjct: 252 NINDSLGHNVGDELLKGVAERFRGLFAPGVTLARLGGDEFAVLVENCSQPGQAAALARRI 311

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
              ++          ++ I  S GI+           ++  AD AL+ AK +GR+    +
Sbjct: 312 LDALKEPLRF--DDHALFINASIGISLFPGDALSAGQLLRNADSALFKAKNAGRDGYALY 369

Query: 259 SDI 261
           ++ 
Sbjct: 370 TEE 372


>gi|322421187|ref|YP_004200410.1| diguanylate cyclase/phosphodiesterase [Geobacter sp. M18]
 gi|320127574|gb|ADW15134.1| diguanylate cyclase/phosphodiesterase [Geobacter sp. M18]
          Length = 748

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 10/170 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141
            + E   +  ++ QL+  D L+GLLN S  ++ +            +++ +F D++ FK 
Sbjct: 281 DVTEKKRTAEQLEQLAYYDSLTGLLNRSMLLNRMDQTIGIAQREGLRMATLFLDLNGFKV 340

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND  GH  GD+++  ++ +L         + RLGG+EF   A    E+ A  +A +L +
Sbjct: 341 INDTMGHEAGDQILIEVARRLKGSVRKRDTLARLGGDEFVMVATYDKEENAGYIAQNLLR 400

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250
            I  + +    G  +++  S GI+      +   T++  AD A+Y  KK 
Sbjct: 401 RI--TPVYEVCGREVYLGGSIGISVYPDDGDSPETLLKNADIAMYNTKKK 448


>gi|207722273|ref|YP_002252709.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
 gi|206587450|emb|CAQ18032.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
          Length = 1178

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 22/187 (11%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQ 141
            + E  ++  R++Q + +D L+GL N +                  +  +   +ID FK 
Sbjct: 737 DVTEQEMTRARLAQHATVDPLTGLPNRTLLADRVQQAVEMAARQRSRFYVALINIDRFKV 796

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA----AILAN 197
           +ND+ GH +GD+V+  ++++L     T   V R  G+ FA     +          + A 
Sbjct: 797 VNDSLGHLLGDEVLRRIAERLRDAADTVDTVARFSGDVFALVISHAGSHGVDLGFDLFAE 856

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +R            G  + +T S G+AE   H     T++  A+ A+Y AK++GRNR+ 
Sbjct: 857 PIR----------VEGHEVFVTASIGVAEYPAHGTDSETLVRHAEMAMYYAKQNGRNRLE 906

Query: 257 CFSDIEN 263
            F+   +
Sbjct: 907 FFAPEMD 913


>gi|253700150|ref|YP_003021339.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M21]
 gi|251775000|gb|ACT17581.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M21]
          Length = 316

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 9/178 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144
           EL  +   + +L+  D L+ L NH  F  +          Y ++ S++F D+D FK  ND
Sbjct: 139 ELKEANLALKELAVRDGLTALYNHRYFQEAFVLEVARSKRYGKQCSLIFMDVDNFKMYND 198

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GHP GD ++  L+  +           R GGEEF      + ++ A  +A +LR  + 
Sbjct: 199 TNGHPQGDALLKTLARLMTTHLRICDTAARYGGEEFVLLLPETPKEAALGVAEELRVRVA 258

Query: 205 NSQINISSGPSIH-ITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
                      +  +TIS G+A           ++  ADQ LY AK SG+N VV   D
Sbjct: 259 AHPFPGGETQPLGKVTISIGVAGYPRDGVEAPELLDFADQLLYKAKNSGKNMVVWEKD 316


>gi|170722098|ref|YP_001749786.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619]
 gi|169760101|gb|ACA73417.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619]
          Length = 533

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 13/190 (6%)

Query: 79  SLLLGYIS------GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKL 129
           SL L  I+          +EL  S  ++ +L+  D ++GL N   F   L       + L
Sbjct: 74  SLFLALINRKQRQLQQRNRELRSSQAQLERLAHYDTITGLPNRVLFQQQLADAILQGDGL 133

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +++  DID FKQ+ND+ GH +GD ++   + + +    +   V RLGG+EF     G+  
Sbjct: 134 AVLMLDIDGFKQVNDSLGHAMGDLLLQQATARFLQELASADRVCRLGGDEFVFMLRGTQG 193

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAK 248
           Q +  +A+ LR +    +    +G +  +T S G+A    H E + +++  AD A+Y AK
Sbjct: 194 QVSHQVAHLLRCL---QRPFDLNGSTALVTGSIGLARCPQHGEDVGSLLRHADTAMYAAK 250

Query: 249 KSGRNRVVCF 258
           +SGRN    +
Sbjct: 251 ESGRNAWRPY 260


>gi|163760032|ref|ZP_02167116.1| diguanylate cyclase/phosphodiesterase [Hoeflea phototrophica
           DFL-43]
 gi|162282990|gb|EDQ33277.1| diguanylate cyclase/phosphodiesterase [Hoeflea phototrophica
           DFL-43]
          Length = 502

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 9/204 (4%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           L L++++    LL+   S + L  L  S  +   L++ D L+ L N   F  +L +    
Sbjct: 290 LGLLVVASAAVLLVARRSSAALSALQESEAKNRFLAQHDPLTELPNRVQFDLALEAIIEK 349

Query: 125 -YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
              ++ +I+  D+D FK +ND +GH  GD V+  +  ++    G      R+GG+EF   
Sbjct: 350 GQQDRCAILCVDLDRFKVVNDTYGHHAGDTVLKIIGSRISRTIGDAGMTARIGGDEFIVL 409

Query: 184 ALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHITISAGIAERCHKE-PISTIIYRAD 241
                ++E   +     ++IE+  + +   G    +  S G+A          ++I  AD
Sbjct: 410 LYHELDRE--HVLRRCEQLIESVSLPVLFEGGMADVGASVGVAWWPDDALTAKSVIKCAD 467

Query: 242 QALYVAKKSGRNRVVCFSDIENNT 265
            ALY AK+ GR +         NT
Sbjct: 468 GALYRAKEMGRGQTCFARPDLANT 491


>gi|170725889|ref|YP_001759915.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
 gi|169811236|gb|ACA85820.1| diguanylate cyclase [Shewanella woodyi ATCC 51908]
          Length = 581

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 108/244 (44%), Gaps = 26/244 (10%)

Query: 38  FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITI--------------SLLLG 83
           F+  + F   ++ F+I LT ++ +   +++ +     ++                +L L 
Sbjct: 327 FVWLIFFAGVLYTFFIWLTNWHFISKGIIQPVIATSNAMQAIANEKQNTPLPQADNLELQ 386

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
            +  S+   L     ++  +S ID L+G  N   F   L          N+ +SI+ FD+
Sbjct: 387 QMVSSLET-LKSYAAQVKSISEIDGLTGAYNRRFFDHKLKHELKSTSKFNQPISIILFDV 445

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAIL 195
           D FK  ND +GH +GD+ +  +S  L  +      +  R GGEEF      +  Q A+ +
Sbjct: 446 DNFKLFNDRYGHVIGDQCLKRISYALKTLPEMQDRIFARYGGEEFIVFLTATDNQTASDI 505

Query: 196 ANDLRKIIENSQINISSGPSIHI-TISAGIAE--RCHKEPISTIIYRADQALYVAKKSGR 252
           A  +R+ +    I  +      + TIS G+            T+I++AD ALY AK SGR
Sbjct: 506 AEIMREEVIKLAIPHADSLHNELTTISIGVTTSNSEPGITAETLIHQADIALYQAKASGR 565

Query: 253 NRVV 256
           N +V
Sbjct: 566 NCIV 569


>gi|331014835|gb|EGH94891.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 643

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 11/183 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S +  +  S   ++QL   D L+ L N       +              +++  D+D+FK
Sbjct: 196 SDITAIKRSERELAQLIHFDALTDLPNRLLLTDRISQALTSARASKRGCALLLIDLDHFK 255

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            IND+ GH VGD V+  ++++L  + G    + R GG+EFA      S+   AA LA  +
Sbjct: 256 NINDSLGHNVGDDVLKAVAERLKGLCGNETTLARPGGDEFALLVKNCSQVVRAAALAQQV 315

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            ++++     + +   + +T S GI+      +    ++  AD AL+ AK  GR+    +
Sbjct: 316 SEVLKA--PFVIAAHQLFVTASMGISLYPGDAQSAEQLLRNADSALFKAKSEGRDCYALY 373

Query: 259 SDI 261
           ++ 
Sbjct: 374 TEE 376


>gi|81301328|ref|YP_401536.1| diguanylate cyclase/phosphodiesterase [Synechococcus elongatus PCC
           7942]
 gi|81170209|gb|ABB58549.1| diguanylate cyclase/phosphodiesterase [Synechococcus elongatus PCC
           7942]
          Length = 901

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 11/168 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQIN 143
           E   +  ++  L+  D L+ L N + F+  L +        +    +++F D D FK +N
Sbjct: 452 ERQQAQAQLWHLAHFDTLTQLPNRAYFVEQLHAWFNRYKADHQYPFAVLFLDCDRFKIVN 511

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GD ++  ++ +L     +P+   RLGG+EF              LA  L ++I
Sbjct: 512 DSLGHSAGDVLLTQVAQRLQSCIASPVIFARLGGDEFGVLVPAQDPGYPQDLAEQLHELI 571

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250
                    G  I+I +S GI+    + +    ++  AD A+Y AK++
Sbjct: 572 --VHPFEIQGQRIYIGVSIGISFVSAQIDAAEELLRSADTAMYAAKRN 617


>gi|163848810|ref|YP_001636854.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222526763|ref|YP_002571234.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Chloroflexus sp. Y-400-fl]
 gi|163670099|gb|ABY36465.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222450642|gb|ACM54908.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Chloroflexus sp. Y-400-fl]
          Length = 845

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 11/177 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144
           E   + ++++  +  D L+GL N   F   L    E        ++++F D+D FK +ND
Sbjct: 403 EQHATLHKLAYQAHHDALTGLPNRLLFEDRLQQAIEHARRANTMVAVLFIDLDRFKHVND 462

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203
             GH  GD ++  ++ +          + R GG+EF       +S Q+   +   L + +
Sbjct: 463 TLGHTTGDMLLIQVARRFEACIRATDTIARHGGDEFLLVLSDITSPQQVTHVVRRLHEAL 522

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           +  Q    +G  I ++ S G +        +  +   AD A+Y AK+   N    F 
Sbjct: 523 D--QPFFVNGHEIFVSASIGASLYPIDGTDVIALQRAADVAMYRAKQLLHNSFQFFD 577


>gi|330899691|gb|EGH31110.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 972

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 83/184 (45%), Gaps = 12/184 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           E + + N+++ L+  D L+ L N           IS   S  + +S++F D+D FK +ND
Sbjct: 521 ERYDAKNKLTYLAENDSLTRLPNRWFLSNYLREIISRTTSAPDAVSVIFIDLDRFKAVND 580

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS--SEQEAAILANDLRKI 202
             GH VGD+++     +L         V RLGG+EF+     S  SE     LA  +   
Sbjct: 581 TMGHSVGDQLLIQAGRRLRDCIDENSVVARLGGDEFSIVVTHSVYSESLIKSLATQVVDA 640

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +   +     G  I ++ S GIA           I+  AD A+Y AKKSGRN    +   
Sbjct: 641 L--GKPFNLGGQDIFVSASVGIANYPFDGRDTGVILKNADTAMYHAKKSGRNNFKFYDAR 698

Query: 262 ENNT 265
            N +
Sbjct: 699 MNES 702


>gi|326317056|ref|YP_004234728.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373892|gb|ADX46161.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 347

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 80/192 (41%), Gaps = 29/192 (15%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY----------------------NEKL-- 129
           + +Y  +   S  D L+GL N   F                              E L  
Sbjct: 143 YQNYQSLLDYSERDALTGLFNRKTFDEQFARRAGMSSNAATEVSAEPDDASQPRGEPLQH 202

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
            +   DID+FKQ+ND FGH  GD+V+  +++ L   F     + R GGEEF      ++ 
Sbjct: 203 WLAVVDIDHFKQVNDRFGHLYGDEVLILIANILRNSFRGHDRIFRFGGEEFVVLLRSTTL 262

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
             A    N  R  ++             +T+S G A      P+  I+ +ADQALY AK+
Sbjct: 263 ATAHKAFNRFRTAVQEYDFP----QVGRVTVSLGFASTERGAPVE-ILGQADQALYYAKE 317

Query: 250 SGRNRVVCFSDI 261
            GRNRV  + D+
Sbjct: 318 HGRNRVCYYDDL 329


>gi|261210656|ref|ZP_05924948.1| GGDEF family protein [Vibrio sp. RC341]
 gi|260840141|gb|EEX66721.1| GGDEF family protein [Vibrio sp. RC341]
          Length = 440

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 99/227 (43%), Gaps = 18/227 (7%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102
           +F+A + ++         LE  +  N    + +      L  ++ S    L     +  +
Sbjct: 216 LFLAMLIMWAAAGAWLSALE--IRRNRREALRARVRQAHLQRLNHS----LHEQNMKFVE 269

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++  D L+G +N       L            + S++F D+DYFKQIND +GH +GD ++
Sbjct: 270 MAHRDALTGAINRHGIRDWLQEQARLVRWQLNQCSVLFIDLDYFKQINDVYGHTLGDDLL 329

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +  L         + R GGEEF      +  ++A  LA  LR  +EN          
Sbjct: 330 REFALVLNREIRESDRLVRWGGEEFVVFCSQTHLEQAVELAERLRGCVENHHWIHGGD-- 387

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
             +T S GIA+    E I+  + RAD+ALY AK+ GRNR+     + 
Sbjct: 388 --LTCSIGIAQM-GDERITETVSRADEALYRAKRLGRNRIEVHYGLM 431


>gi|251772451|gb|EES53018.1| diguanylate cyclase [Leptospirillum ferrodiazotrophum]
          Length = 425

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 87/196 (44%), Gaps = 13/196 (6%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYN 126
           + + I LL      S+ K+   S   + Q +++D L+GL N                   
Sbjct: 219 LGLFIWLLWRLFVLSMEKKRR-SREILIQETQMDRLTGLPNRKKLFEFLEVACRRAEKEG 277

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
             L+++F D+D FK +ND  GH  GD+++  ++ +   +      + RLGG+EF     G
Sbjct: 278 RNLAVLFVDLDGFKSVNDRHGHAAGDRILVEVAHRFGSIIRGEDLLARLGGDEFVICLTG 337

Query: 187 SSEQE--AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQA 243
           + E       LA  L    +N       G  + ++ S G+A         + ++  AD A
Sbjct: 338 TGESRDWVESLAQRLIATFDN-PFFPPVGKGV-LSCSVGVALFPKDGRSPAELLTSADMA 395

Query: 244 LYVAKKSGRNRVVCFS 259
           +Y +K +G++RV  ++
Sbjct: 396 MYQSKNAGKHRVTFYN 411


>gi|220906243|ref|YP_002481554.1| diguanylate cyclase [Cyanothece sp. PCC 7425]
 gi|219862854|gb|ACL43193.1| diguanylate cyclase [Cyanothece sp. PCC 7425]
          Length = 340

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 11/165 (6%)

Query: 103 LSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           L+ ID L+ + N              LG     LS +  D+D+FK  ND FGH  GD+ +
Sbjct: 169 LATIDNLTQIANRRKLDDYLTEEWARLGRDCLPLSFLLCDVDFFKTYNDTFGHQAGDRCL 228

Query: 156 AFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSG 213
             ++  +   V      V R GGEEFA     +    A  +   +R+ +EN  I    + 
Sbjct: 229 QEVAQAIAATVKRPADLVARYGGEEFAVILPNTPLAGALQVGERIRQAVENLCIVQTPTC 288

Query: 214 PSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256
           P+  +TIS G+A     +   I+++I  ADQ LY+AK+ GRN V 
Sbjct: 289 PNPCVTISVGVATAIPGQGMSIASLIASADQCLYLAKQRGRNCVC 333


>gi|153835035|ref|ZP_01987702.1| sensory transduction protein kinase [Vibrio harveyi HY01]
 gi|148868512|gb|EDL67611.1| sensory transduction protein kinase [Vibrio harveyi HY01]
          Length = 679

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 7/168 (4%)

Query: 104 SRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           + ID L+ L N   F   L         L + + DID FK IND+ GH +GDKVI  +S 
Sbjct: 253 AHIDSLTKLYNRFGFTKRLEQLIKSQTPLLVFYLDIDNFKNINDSLGHHIGDKVIQEVSA 312

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           +L         +G LGG+EF        + + A IL+  +  +I  +Q       S  + 
Sbjct: 313 RLKRSLPNQAIIGHLGGDEFGIILPEPENTRMAEILSERIISLI--NQPFDLHHFSKRLA 370

Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
            S G +      +    ++  AD A+Y AK  GRNR++ F+D  N   
Sbjct: 371 CSIGSVRYPEDGQDARILLQNADTAMYEAKDRGRNRLIKFNDQMNKEA 418


>gi|319426852|gb|ADV54926.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella putrefaciens 200]
          Length = 1438

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 87/184 (47%), Gaps = 7/184 (3%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQIND 144
            S +         + +L+  D L+GL N S    +L +   K    S++  D+D FK+IND
Sbjct: 990  SDISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLSNLVNKEIAHSLMVLDLDNFKRIND 1049

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKII 203
            + GH VGD+++  +S ++  +      + RLGG+EFA     GS    +A +A  + +  
Sbjct: 1050 SLGHQVGDQLLKLVSIRVKSILPKNTSIYRLGGDEFAIVLDKGSDISASAAIAGRVIEAF 1109

Query: 204  ENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDIE 262
                 NI+    + + +S GI      E     ++ +AD A+Y AK +G N    +S+  
Sbjct: 1110 -KMSFNINE-EQLVLGLSIGIVLYPEDEQNEQALLRKADIAMYHAKSAGGNCYQFYSESL 1167

Query: 263  NNTC 266
            N   
Sbjct: 1168 NQHA 1171


>gi|91793096|ref|YP_562747.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91715098|gb|ABE55024.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella denitrificans OS217]
          Length = 763

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 14/182 (7%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE----------KLSIVFFDIDYFKQIN 143
             + + I   +  D L+GL N    +  +  Y              S++  D+D FKQIN
Sbjct: 314 KKANHLIQYQANNDALTGLSNRKHLLEKIKKYIHGKQEDNQTLPAFSLLQIDLDNFKQIN 373

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKI 202
           D  GH  GD ++  ++D+L     +   + RL G+EFA       + +E + LA  + ++
Sbjct: 374 DTLGHDNGDALLIAVADRLSQACPSKALLARLNGDEFALLLPNKLNAEELSELAQSINQL 433

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           I  S+  +     ++ T+S GIA        +S ++  A QA+Y AK+ GRN    F   
Sbjct: 434 I--SERFVIDQQVLYTTVSIGIARYPADSNSVSALLNCASQAMYSAKEKGRNGFQFFDQQ 491

Query: 262 EN 263
             
Sbjct: 492 MQ 493


>gi|24375348|ref|NP_719391.1| cyclic nucleotide phosphodiesterase, putative [Shewanella
           oneidensis MR-1]
 gi|24350166|gb|AAN56835.1|AE015818_11 cyclic nucleotide phosphodiesterase, putative [Shewanella
           oneidensis MR-1]
          Length = 631

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 15/205 (7%)

Query: 64  ILVENLSL-VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +L +N SL +II +    +L  +S    K++     ++  ++  D L+ L N     +  
Sbjct: 422 LLEKNKSLQLIILLLTGCILATVSLFAYKQVHR-NRQLQTIALTDYLTQLPNRRHIYAQA 480

Query: 123 GSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
             Y +         SI+ FD D+FK+INDNFGH +GD+ +  +++    +      VGR+
Sbjct: 481 EQYFQLALKQQIPFSIIIFDADHFKKINDNFGHEIGDQALLTIAEASKTLTTDRNLVGRI 540

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-----HK 230
           GGEEF      +    A  LA++L+ +I      I+    + +T+SAG+A          
Sbjct: 541 GGEEFLILLPNTDADRAWKLAHELQTLITRFG-AINLPVELKLTVSAGVATLPIQSELQD 599

Query: 231 EPISTIIYRADQALYVAKKSGRNRV 255
           +  + ++ RAD ALY AK +GRN V
Sbjct: 600 QNFARLLKRADNALYEAKNAGRNCV 624


>gi|88810303|ref|ZP_01125560.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Nitrococcus mobilis Nb-231]
 gi|88791933|gb|EAR23043.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Nitrococcus mobilis Nb-231]
          Length = 945

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 82/187 (43%), Gaps = 11/187 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           + KE+      ++ L+  D L+GL N   F   L         +N +L+++   ID+F++
Sbjct: 502 LEKEVAQRGEELAYLATHDALTGLPNRMLFSEHLRQALVEADRHNRRLTVICLAIDHFQE 561

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLR 200
           +N++ GH  GD ++   S ++         + RLGG+EF          +  I +   + 
Sbjct: 562 VNNSLGHAAGDDLLCAFSQRVGQCLRRSDVLARLGGDEFIILCPEIVAPDFTIGITEKIL 621

Query: 201 KIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I+E      +    + +T S G+A      + +  +I  AD A+  AK +GRN  V + 
Sbjct: 622 SIMEEG--FHAGSNEVVVTTSIGVALYPESGKTVEALIKNADAAMRQAKAAGRNTYVLYG 679

Query: 260 DIENNTC 266
                T 
Sbjct: 680 PELGKTA 686


>gi|113474516|ref|YP_720577.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Trichodesmium erythraeum IMS101]
 gi|110165564|gb|ABG50104.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Trichodesmium erythraeum IMS101]
          Length = 866

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 83/207 (40%), Gaps = 27/207 (13%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDI 136
           I    +     +  ++   +  D L+GL N + F   L           N + +++F D+
Sbjct: 376 IILKDITHRKKTQAKLVYDALHDTLTGLPNRALFFERLKLALCRSRKQPNYQFNVLFLDL 435

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FK IND+ GH +GD+++  +S +L         + RLGG+EF       S+ Q+A  +
Sbjct: 436 DRFKVINDSLGHTIGDRLLIAISKRLQNCIKASDTLARLGGDEFTILLESPSNLQDATKV 495

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPIST--------------IIYR 239
           A  + +  E  +     G  I  T S GI        E I                ++  
Sbjct: 496 AGRIHQ--ELVRPIYLEGNEIFTTASIGIVTNRRNFIEDIDENHPLICPIYNKPEDLLRD 553

Query: 240 ADQALYVAKKSGRNRVVCFSDIENNTC 266
           AD A+Y AK  G+ R   F    +   
Sbjct: 554 ADIAMYRAKTLGKARHEVFDLTMHREA 580


>gi|308050452|ref|YP_003914018.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
 gi|307632642|gb|ADN76944.1| diguanylate cyclase [Ferrimonas balearica DSM 9799]
          Length = 389

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 10/168 (5%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFG 147
               ++  L+  D L+GL N   F                 L+++  DID+FK+IND FG
Sbjct: 213 RQLEKLRALALTDPLTGLSNRRHFFDYSEPYLVRALEQGGGLALILMDIDHFKEINDRFG 272

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           HP GD+V+     +LV +        R+GGEEFA      ++Q    +A  L + +  +Q
Sbjct: 273 HPFGDRVLGQFGQRLVNLVEEEALAARIGGEEFALLMPLRTDQCVQEVAECLCRQVGWTQ 332

Query: 208 INISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNR 254
                G  + + +S G  A R +++ ++ +  RAD+ALY AK  GRNR
Sbjct: 333 --TEQGQEVRVAVSVGATAWRGNQDRLTDMYLRADKALYQAKAEGRNR 378


>gi|295699215|ref|YP_003607108.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1002]
 gi|295438428|gb|ADG17597.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1002]
          Length = 771

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 69/250 (27%), Positives = 109/250 (43%), Gaps = 22/250 (8%)

Query: 24  PHTFMIYFSIFFSI-----FIATVIFIANIFLFYIGLTPF-----YGLEYILVENLSLVI 73
           P  +++   +   I     ++    F     LFY    P      +  E        ++ 
Sbjct: 109 PLAWLLPAFVVIPICAAPLWLTPAHFATGSALFYAAAIPLLRGKAHAPEVDAAVWTWVIA 168

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS--- 130
           I   ++++  +      +  F+  ++++QL+  D L+GL N  +F+       E L+   
Sbjct: 169 IGAPMAVVFHFGFYRFRRNHFLLESQLAQLAATDPLTGLQNRRSFVKHAEGRLETLAPGA 228

Query: 131 ---IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187
               +F DID FK +ND FGH VGD  +  ++  L         V R+GGEEFA   +  
Sbjct: 229 QISAIFLDIDSFKSLNDRFGHAVGDLALFQVAQVLKDAVALYDSVSRIGGEEFA-LLIDE 287

Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247
               A  LA  LR  I   +      P  H+T S G+AE    E    ++ RAD+AL  A
Sbjct: 288 DLTGALQLAERLRLDIAAIER-----PDGHLTASFGVAEHRRGESFMVLLDRADEALLRA 342

Query: 248 KKSGRNRVVC 257
           K++GRNRV  
Sbjct: 343 KQTGRNRVCA 352


>gi|289208257|ref|YP_003460323.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           K90mix]
 gi|288943888|gb|ADC71587.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           K90mix]
          Length = 758

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 91/189 (48%), Gaps = 14/189 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQ 141
            + +      ++  ++  D L+G+ N +A         +       +L+++F D+D+FK 
Sbjct: 563 DVTDRRELEVKLKTMAWEDPLTGMANRAAMDRAFPRLAARAERQGGRLALLFIDLDHFKP 622

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILANDLR 200
           +ND +GH VGD+++  ++++L         + RLGG+EF    A     +E   LA  ++
Sbjct: 623 VNDRYGHAVGDQLLRRVAERLKSHLRPDDVLVRLGGDEFIVLTAPLDEREEGLHLAQRVQ 682

Query: 201 KIIENSQINISSGP----SIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255
           + + N+   + +GP     + IT S G+A        +S ++  AD+A+Y  K  G N V
Sbjct: 683 QDLNNT-FEVHTGPGEFVELKITSSIGVAFYPDVGRHLSDLMVAADRAMYQVKAQGHNDV 741

Query: 256 VCFSDIENN 264
               D  +N
Sbjct: 742 GLAGDAPHN 750


>gi|194292710|ref|YP_002008617.1| diguanylate cyclase, ggdef domain [Cupriavidus taiwanensis LMG
           19424]
 gi|193226614|emb|CAQ72565.1| putative diguanylate cyclase, GGDEF domain [Cupriavidus taiwanensis
           LMG 19424]
          Length = 415

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 63/200 (31%), Positives = 96/200 (48%), Gaps = 18/200 (9%)

Query: 70  SLVIISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAFI-------SS 121
           S  +++  I+ LLG    +++  E  +++N     +RID L+GLLN  A         + 
Sbjct: 195 SAWVLAPLIATLLGLFGFTVMAMEQIVAHNESG--ARIDALTGLLNRGALEMSALSLVAR 252

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                + LS +  DIDYFKQ+ND  GH  GD V+  ++  L          GR GGEEF 
Sbjct: 253 WQRDGQPLSCLVIDIDYFKQVNDTCGHHAGDAVLREVAQALDNSRRASDVAGRYGGEEFC 312

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-----EPISTI 236
                + EQ+A+ LAN + + +    +    G   H ++S G+A+             T+
Sbjct: 313 VLCPATDEQQASALANRVLRKVHAIDLP---GGRGHASVSIGVAQLRGGPGSREALWRTL 369

Query: 237 IYRADQALYVAKKSGRNRVV 256
              AD+ALY AK  GR+R V
Sbjct: 370 FADADRALYHAKAHGRDRYV 389


>gi|170747668|ref|YP_001753928.1| diguanylate cyclase [Methylobacterium radiotolerans JCM 2831]
 gi|170654190|gb|ACB23245.1| diguanylate cyclase [Methylobacterium radiotolerans JCM 2831]
          Length = 510

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 14/230 (6%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
           I T+  I N+ L    +   +  +  ++  + L +  +TI+L L  + G  L+       
Sbjct: 266 IGTLPLILNVALSTKDVEADWAAKAAIIGGIVLALCGLTIALSL--LFGRELRRREALRA 323

Query: 99  RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151
            ++ LSR D L+GL N   F  +L           + LS++  D D+FK+ ND +GHPVG
Sbjct: 324 EMAALSRTDVLTGLPNRRCFEDALRRNLDAARRDGQPLSLLIVDADHFKRFNDRYGHPVG 383

Query: 152 DKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210
           D ++  L+  L   V      V R+GGEEF      + E  A  +A+ +   +    +  
Sbjct: 384 DAILQGLARCLAASVHRPQDLVSRIGGEEFTLLLPETDEAGALRVADTVHAEVAKLTVES 443

Query: 211 SSGPSIHITISAGIAERCHKEPISTII----YRADQALYVAKKSGRNRVV 256
           +   +  +T+S G+A        S  +      AD ALY AK  GRN+  
Sbjct: 444 AGLGAGTVTVSIGLASVRPGSDRSAPLPDPYRLADGALYEAKNGGRNQTR 493


>gi|126738794|ref|ZP_01754490.1| diguanylate cyclase, putative/response regulator [Roseobacter sp.
           SK209-2-6]
 gi|126719975|gb|EBA16682.1| diguanylate cyclase, putative/response regulator [Roseobacter sp.
           SK209-2-6]
          Length = 462

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 14/210 (6%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA-- 117
           G   +L     +  +++ ++  L Y + +   +L  S     + +  D ++GL N     
Sbjct: 247 GAHDVLQAGFDVEELALRLTTQLHYKTRND--QLRASVRNGLRAAVQDPMTGLYNRRYAK 304

Query: 118 -FISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
            F+              +++  D+D+FK+IND++GHPVGD V+   + +L         +
Sbjct: 305 PFLDRTAKRAAENGSNYALMLADLDHFKRINDSYGHPVGDAVLIEAAKRLQAELRPVDLL 364

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKE 231
            R+GGEEF     G+ E EA + A DL   I +   +I      + +TIS G       +
Sbjct: 365 ARVGGEEFMIVLPGADEIEAGVAAVDLCNAINSRPFHIDGIREPVEVTISIGAVIGRGND 424

Query: 232 P----ISTIIYRADQALYVAKKSGRNRVVC 257
                ++ +I  AD+ALY AK +GRN+V  
Sbjct: 425 DATQSVNDLISAADRALYDAKNAGRNQVTM 454


>gi|111225318|ref|YP_716112.1| hypothetical protein FRAAL5972 [Frankia alni ACN14a]
 gi|111152850|emb|CAJ64597.1| Conserved hypothetical protein; putative membrane protein [Frankia
           alni ACN14a]
          Length = 645

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 65/257 (25%), Positives = 109/257 (42%), Gaps = 27/257 (10%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           L+ WL        + P   M  + +     IA  + +A + L  + L     L  + V  
Sbjct: 59  LASWL-----RPRWQPPAKMSGWGV-----IAVPLVLATVALGLLVLGAAIDLPAVTVAL 108

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
            +  ++S        +I    L E  +       L+R D L+GL N   FI  L    + 
Sbjct: 109 AAATVLSALARAAFTFIEVQQLAESRV-------LARTDDLTGLANRRGFIERLTRAEQH 161

Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
                  +++  D+D FK+IND+ GH VGD ++  +  ++           RLGG+EFA 
Sbjct: 162 TTGPDTFALLLLDLDRFKEINDSLGHQVGDALLTQVGTRISDALRPGDLHARLGGDEFAV 221

Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRAD 241
               +    A  +A+ +  ++ +       G ++H+  S G A    H +   T++ RAD
Sbjct: 222 LLEHADADAARRVADRVLTVLAD--PFDVGGVTLHVGASIGAAVYPDHAQDAHTLLQRAD 279

Query: 242 QALYVAKKSGRNRVVCF 258
            A+Y AK SGR  V  +
Sbjct: 280 VAMYAAK-SGRTGVESY 295


>gi|39936282|ref|NP_948558.1| putative diguanylate cyclase/phosphodiesterase [Rhodopseudomonas
           palustris CGA009]
 gi|39650137|emb|CAE28660.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
           [Rhodopseudomonas palustris CGA009]
          Length = 656

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 105/246 (42%), Gaps = 16/246 (6%)

Query: 29  IYFSIFFSIFIAT-----VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83
           +  +  F I ++      +I +  +FL ++      G E     +    + +  ++  L 
Sbjct: 149 VMAATLFRIMMSGDSSDYIIALDGVFLTFMLFRAAIGGEREFTASQMTALEATDLANSLA 208

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFK 140
             +  +L     S   + Q++R D L+GL N S F  +        + ++ V FD+D FK
Sbjct: 209 SANNEVLN----SNRALEQIARADPLTGLANRSHFRDAAADACRSGQGVAFVLFDVDNFK 264

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
            IND  GH  GD+VIA ++D L +  G+     RLGG+EF     G      A  LA  L
Sbjct: 265 IINDTRGHDAGDRVIAAVADLLRLSCGSHDLPVRLGGDEFIVVLKGDDVAARALSLARRL 324

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
              +  ++     G  + IT S GIA        +  +  RAD ALY AK  GR  +  F
Sbjct: 325 SGAL--TRPLQVLGQPLAITCSIGIAAHPGGPIDVEDVFSRADAALYRAKDDGRACIRLF 382

Query: 259 SDIENN 264
                 
Sbjct: 383 DARMQE 388


>gi|17548475|ref|NP_521815.1| hypothetical protein RS03712 [Ralstonia solanacearum GMI1000]
 gi|17430722|emb|CAD17405.1| probable signal transduction eal-ggdef domains transmembrane
           protein [Ralstonia solanacearum GMI1000]
          Length = 1178

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 22/187 (11%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQ 141
            + E  ++  R++Q + +D L+GL N +                  +  +   +ID FK 
Sbjct: 737 DVTEQEMTRARLAQHATVDPLTGLPNRTLLADRVQQGVEMAARQRSRFYVALINIDRFKV 796

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA----AILAN 197
           +ND+ GH +GD+V+  ++++L     T   V R GG+ FA     +          + A 
Sbjct: 797 VNDSLGHLLGDEVLRRIAERLRDAADTVDTVARFGGDVFALVISHAGSHGTDLGFDLFAE 856

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +R            G  + +T S G+AE   H     T++  A+ A+Y AK++GRNR+ 
Sbjct: 857 PIR----------VEGHEVFVTASIGVAEYPAHGSDSETLVRHAEMAMYFAKQNGRNRLE 906

Query: 257 CFSDIEN 263
            F+   +
Sbjct: 907 FFAPEMD 913


>gi|220908927|ref|YP_002484238.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Cyanothece sp. PCC 7425]
 gi|219865538|gb|ACL45877.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7425]
          Length = 905

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 12/170 (7%)

Query: 104 SRIDCLSGLLNHSAFISSLGSYNE--------KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +  D L+ L N S  +  L    +          +++F D+D FK +ND+ GH +GD+++
Sbjct: 474 ALYDPLTHLANRSLLMERLRQAMQIRERYPARLFAVLFLDLDRFKWVNDSLGHWIGDRLL 533

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGP 214
             ++ +L  +  +   V RLGG+EF       S+  EA  +A+ ++  +   Q+    G 
Sbjct: 534 IEIAARLKALSRSEDTVARLGGDEFVLLLANLSTPAEAIAVASRIQHTLA--QVFEIEGH 591

Query: 215 SIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           +I+   S GIA   H ++    ++  AD A+Y +K  G N V  F     
Sbjct: 592 TIYTGTSIGIAFADHLEQKGEELLQYADMAMYQSKSRGGNNVQVFDTAMR 641


>gi|304408640|ref|ZP_07390261.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|307305469|ref|ZP_07585217.1| diguanylate cyclase [Shewanella baltica BA175]
 gi|304352461|gb|EFM16858.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|306911772|gb|EFN42197.1| diguanylate cyclase [Shewanella baltica BA175]
          Length = 325

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 113/257 (43%), Gaps = 23/257 (8%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           I+ C+E   +     +  ++  IFF +F      I +     I L     +  + VE++ 
Sbjct: 80  IFSCYEIGYKGLIYISPTVF--IFFFLFNLKSSLILSTLYACISL-----VSALQVESVE 132

Query: 71  LVI---ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---- 123
           LV+   ++    ++   I   I+ +   +   +  L+  D L+G LN     + L     
Sbjct: 133 LVLRFSVATFDCIIFAAIFAHIINKQRQA---LVHLANTDELTGALNRKPLKTKLELSVY 189

Query: 124 ---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                    S++  DID+FK +NDNFGH +GD+++   S  +         + R GGEEF
Sbjct: 190 EYQQQQIPASLLLIDIDFFKMVNDNFGHIMGDQLLNKFSQHIQKKIRKDDLLFRFGGEEF 249

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                 +  + AAI+A DLR+ IE             +T S G+A+    + + T +   
Sbjct: 250 LILLPNTQFESAAIVAEDLRRSIEEQHF---LDQHTQVTCSIGVADLRQADTLDTWLKTC 306

Query: 241 DQALYVAKKSGRNRVVC 257
           D  LY AK +GRN VV 
Sbjct: 307 DNLLYTAKNAGRNCVVA 323


>gi|253995496|ref|YP_003047560.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera mobilis JLW8]
 gi|253982175|gb|ACT47033.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera mobilis JLW8]
          Length = 739

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 22/195 (11%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
           G  + +   +   + +L+  D L+GL N    +  L           +  +++F D+D F
Sbjct: 281 GRDISDRKRAEEEVQKLAYKDPLTGLSNRRLMLDRLRIALATSARSMQYGALLFLDLDKF 340

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEA----A 193
           K IND  GH  GD ++  ++ ++         V R GG+EF      LG   +EA    A
Sbjct: 341 KVINDTQGHADGDLLLVEVAKRITACVREIDTVSRQGGDEFVVLVERLGEGLEEASRTVA 400

Query: 194 ILANDLR-KIIENSQIN---ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
            +A  +R  + E  QIN   I S  SI I++  G     H + +  +I RAD A+Y AK 
Sbjct: 401 KIAETIRLTLAEPYQINNAHIHSSSSIGISLFCG-----HDQDVDELIKRADMAMYQAKD 455

Query: 250 SGRNRVVCFSDIENN 264
            GRNR   F      
Sbjct: 456 GGRNRTRFFDPQMQE 470


>gi|239995396|ref|ZP_04715920.1| sensory box protein [Alteromonas macleodii ATCC 27126]
          Length = 722

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 13/206 (6%)

Query: 66  VENLSLVIISITISLLLGY--------ISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
            +N  + ++ I+++L   Y         +   + +   +  ++ QL+  D L+GL N ++
Sbjct: 253 TQNGEIKVVDISVALFETYQQTSSYLIATMRDISDRKRNEAKLRQLALHDELTGLSNRNS 312

Query: 118 FISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
              S+       +   +VF D+D FK INDN GH  GD  +  +   L  +FG    VGR
Sbjct: 313 LRESISGLVQKEQHFILVFIDLDGFKAINDNAGHERGDIELQRVGALLTAIFGPIGEVGR 372

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
            GG+EF A     + +E A  +  L   IE   I + +   + ++ S GIAE   H + +
Sbjct: 373 WGGDEFIAVLPNQNVEEIAERSERLISQIEEDAITVKTS-ELRLSASIGIAEFPEHSDNL 431

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
            +++  AD A+Y AK+ G+ +   + 
Sbjct: 432 ESLVQCADAAMYRAKELGKGQAFIYE 457


>gi|319425817|gb|ADV53891.1| diguanylate cyclase with PAS/PAC sensor [Shewanella putrefaciens
           200]
          Length = 339

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 11/185 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFF 134
           L  +    L +      ++ +L+  D L+GL N   F   L  Y E        LS+V  
Sbjct: 151 LFVMVMHDLTQHKEENQKLRKLAATDSLTGLANRRYFDEILQHYWEECTGKLRPLSVVII 210

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAA 193
           D+DYFK  ND FGH  GD+ +  ++  +  +         R GGEEFA      + + A 
Sbjct: 211 DVDYFKVFNDQFGHIQGDECLRKIAKVIADIVPLDIGLAARYGGEEFALILPNHNAKMAL 270

Query: 194 ILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKE--PISTIIYRADQALYVAKKS 250
            +A  +++ I   +         + ++ S GIA   + +      ++  AD ALY AK  
Sbjct: 271 TIAQKIQQGINALRFTEQGLRDYVSVSASQGIASEVNGQFRTSMAMLCAADTALYRAKAD 330

Query: 251 GRNRV 255
           GR+R+
Sbjct: 331 GRDRI 335


>gi|330874676|gb|EGH08825.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 701

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + +  ++  RI +L+  D L+ L N  AFI +L        +  +S++  DID FK+IN
Sbjct: 454 DITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDERFGRDTDTPMSLLLVDIDNFKRIN 513

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++  L+ +L         + R    EFA     + ++     A+ +   +
Sbjct: 514 DSLGHQTGDKLLISLARRLRNTLSPTDVLARFASNEFAVLLDNTGQEAGQTTASQVLATL 573

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I +T S G+A    H     T++  A  AL+ AK +G+++V  F++  
Sbjct: 574 DKPMF--VDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFTEAL 631

Query: 263 NNTC 266
           N   
Sbjct: 632 NAEA 635


>gi|307690161|ref|ZP_07632607.1| diguanylate cyclase with TPR repeats [Clostridium cellulovorans
           743B]
          Length = 1173

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 89/169 (52%), Gaps = 11/169 (6%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNF 146
            I  ++++ ++ ID L+      A  S +          +E+ S++ FD+D FK IND F
Sbjct: 827 IIEKHQLAMIASIDKLTKAYTRKALESYMIQQLEHSKNNDEEFSLIIFDVDKFKDINDTF 886

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD V++ +   ++         GR GGEEF      +S  EA  +A  LR  +E +
Sbjct: 887 GHQTGDLVLSSICKVILSSIRKHDICGRYGGEEFIVLLPNTSTNEALEIAERLRIKVEEA 946

Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           +I    G    +TIS GI+    H   IS ++ RADQALY+AK++GRN+
Sbjct: 947 KI---LGDRRDVTISLGISSYPIHGSDISKLVKRADQALYMAKETGRNK 992


>gi|229076515|ref|ZP_04209476.1| Sensory box/GGDEF [Bacillus cereus Rock4-18]
 gi|228706607|gb|EEL58819.1| Sensory box/GGDEF [Bacillus cereus Rock4-18]
          Length = 909

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 95/214 (44%), Gaps = 11/214 (5%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           +  ++    I   +++ V I +   +   Y+    + E      +I+ L+  D L+ L N
Sbjct: 430 IRAYHKNRDIYYLHVTAVPIFLKDHISGVYLMIKDITESKQQQEQINFLAYHDTLTELAN 489

Query: 115 HSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
             AF   L              +++F D+D FK IND  GH VGD ++  ++ +L  +  
Sbjct: 490 RRAFHQYLEKAIARAKISKSSFAVMFVDLDRFKVINDTLGHRVGDLLLIAVAKRLERLST 549

Query: 168 TPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
             M + RL G+EF        ++ +   +A+ +  ++  ++        + I+ S GIA 
Sbjct: 550 QHMKLARLAGDEFTILIENYKKRTDVKKIADMI--VVAMNKPFEIENQHLRISPSIGIAI 607

Query: 227 RCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                E   +I+  AD A+Y AK  G+NR   ++
Sbjct: 608 YPEAGEDPLSILQHADMAMYEAKNKGKNRSSLYT 641


>gi|218463161|ref|ZP_03503252.1| putative sensory box/GGDEF family protein [Rhizobium etli Kim 5]
          Length = 521

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 69/266 (25%), Positives = 110/266 (41%), Gaps = 14/266 (5%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATV-IFIANIFLFYIGLTPFYGLEYILV 66
           F +I++       SFS    +I  S+    F  T+  +  +  ++ I    FY   ++  
Sbjct: 129 FGAIFMMGANLFFSFSFRLSVITSSVVLCAFFITIETYFPSSQVYKIAFGMFYISCFVFT 188

Query: 67  ENLSLVIISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS- 124
            +++  +     S+LL          E       + +LS  D L+G+ N  A    L   
Sbjct: 189 SSINWRLNVERRSVLLNAAEARYQHWEASERGRSLLELSNTDYLTGINNRRALDRRLDEC 248

Query: 125 ------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGG 177
                       +   D+D+FK+ ND +GH  GD+ +A +++ L   V  +   +GR GG
Sbjct: 249 WAAWKDEGRDFVVFLIDVDFFKRFNDRYGHQEGDRCLAVIANLLKAVVESSGGMIGRYGG 308

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH--ITISAGIAERCHK--EPI 233
           EEF           A  LA  +R  +E   I     P     +T+S G+A       E +
Sbjct: 309 EEFIVVMPAEPPSVAMSLAERIRMEVEFLAIAHDERPDDSAIVTVSIGVAFTSEDVGEKV 368

Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259
             I+  AD ALY AK SGRN +  F 
Sbjct: 369 ERIVREADLALYNAKASGRNCIRRFD 394


>gi|213971646|ref|ZP_03399754.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
 gi|301385615|ref|ZP_07234033.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato Max13]
 gi|302061517|ref|ZP_07253058.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato K40]
 gi|302134619|ref|ZP_07260609.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213923602|gb|EEB57189.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
          Length = 643

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 11/183 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
           S +  +  S   ++QL   D L+ L N       +              +++  D+D+FK
Sbjct: 196 SDITAIKRSERELAQLIHFDALTDLPNRLLLTDRISQALTSARASKRGCALLLIDLDHFK 255

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199
            IND+ GH VGD V+  ++++L  + G    + R GG+EFA      S+   AA LA  +
Sbjct: 256 NINDSLGHNVGDDVLKAVAERLKGLCGNETTLARPGGDEFALLVKNCSQVVRAAALAQQV 315

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
            ++++     + +   + +T S GI+      +    ++  AD AL+ AK  GR+    +
Sbjct: 316 SEVLKA--PFVIAAHQLFVTASMGISLYPGDAQSAEQLLRNADSALFKAKSEGRDCYALY 373

Query: 259 SDI 261
           ++ 
Sbjct: 374 TEE 376


>gi|213585803|ref|ZP_03367629.1| hypothetical protein SentesTyph_32847 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 302

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 10/190 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134
           L   +  +   L  +   ++QL+  D L+ L N       L          +   +++F 
Sbjct: 5   LQARTALLASSLAQANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANRESTSFALLFM 64

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK +ND +GH +GDK++  ++ +L         + R+GG+EF   A  S+  EAA 
Sbjct: 65  DLDGFKAVNDAYGHDIGDKLLVAVTHRLNQPLSGQFTLARIGGDEFVLLAEVSAPDEAAS 124

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253
           LA+ L   I+           + +T+S GIA      +    +++ AD A+Y  K +GRN
Sbjct: 125 LASALVHSIDA--PFTIDPYELVVTLSVGIALYPLDGKNERELMFNADAAMYHTKHTGRN 182

Query: 254 RVVCFSDIEN 263
               F    N
Sbjct: 183 GYHFFQPSMN 192


>gi|120598370|ref|YP_962944.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella sp. W3-18-1]
 gi|120558463|gb|ABM24390.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. W3-18-1]
          Length = 1436

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 87/184 (47%), Gaps = 7/184 (3%)

Query: 88   SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQIND 144
            S +         + +L+  D L+GL N S    +L +   K    S++  D+D FK+IND
Sbjct: 988  SDISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLSNLVNKEIAHSLMVLDLDNFKRIND 1047

Query: 145  NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKII 203
            + GH VGD+++  +S ++  +      + RLGG+EFA     GS    +A +A  + +  
Sbjct: 1048 SLGHQVGDQLLKLVSIRVKSILPKNTSIYRLGGDEFAIVLDKGSDISASAAIAGRVIEAF 1107

Query: 204  ENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDIE 262
                 NI+    + + +S GI      E     ++ +AD A+Y AK +G N    +S+  
Sbjct: 1108 -KMSFNINE-EQLVLGLSIGIVLYPEDEQNEQALLRKADIAMYHAKSAGGNCYQFYSESL 1165

Query: 263  NNTC 266
            N   
Sbjct: 1166 NQHA 1169


>gi|262280147|ref|ZP_06057932.1| response regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262260498|gb|EEY79231.1| response regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 473

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 110/248 (44%), Gaps = 17/248 (6%)

Query: 22  FSPHTFMIYFSIFF-SIFIATVIFIANIFLFYI---GLTPFYGLEYIL-VENLSLVIISI 76
             P   +I+ +I +  I +A +  + + ++ Y         Y  EY+    ++ + +I +
Sbjct: 225 LYPIAALIWCAIRYKPIIVALITTLTSAYIIYHVSGHYLLLYPNEYLSNTISIRIGLIMM 284

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------- 129
           TI+ L       +  EL     ++      D L+  L    F+ S+    EK+       
Sbjct: 285 TIAPLTVSSISVLHSELI---QKLQHAIAHDELTSSLTRRQFLQSVRLLQEKVYKENKTS 341

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +    D+D+FK +NDN+GH +GD+ +      +  +      +GR GGEEFA     +++
Sbjct: 342 AFFMLDVDHFKHVNDNYGHQIGDRALQTCVTTIQNILHPHDLLGRFGGEEFAIFIADTTK 401

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVA 247
           + A  LA  +R  I    I I     I I +S GI+         I  +   AD ALY A
Sbjct: 402 ESAFDLAEQIRIKISQQPIYIYGKLPIFIQVSIGISLYSPSSHRAIENLFKEADDALYQA 461

Query: 248 KKSGRNRV 255
           K+ GRNRV
Sbjct: 462 KRQGRNRV 469


>gi|241767132|ref|ZP_04764898.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
 gi|241362279|gb|EER58297.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
          Length = 508

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 8/175 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           + +L    +R S  +R D L+G LN      ++             L +   DID FK I
Sbjct: 334 IAQLQQELDRASAQARHDPLTGSLNRKGLDEAMEREIARARRRGAPLCLALLDIDNFKTI 393

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD  +  L+     V      + R GGEEF      +           L++ 
Sbjct: 394 NDRLGHTAGDAALVHLAQVTREVMRPQDLLARYGGEEFVLILPDTPVAHGVAAMTRLQRE 453

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  ++  +     + IT SAG+A+    E  +  I RAD+++Y+AK+SG+NRV+ 
Sbjct: 454 L-TTRFFLQGKEKVLITFSAGVAQLGESETSTEAIQRADKSMYLAKRSGKNRVMA 507


>gi|163782780|ref|ZP_02177776.1| preprotein translocase ATPase subunit [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159881901|gb|EDP75409.1| preprotein translocase ATPase subunit [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 1010

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 92/193 (47%), Gaps = 12/193 (6%)

Query: 81  LLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132
           ++G++ +G  +        +++ ++  D ++ L N + FI  L          N  L+++
Sbjct: 568 VVGFVATGKDITHEKELKEKLNYIAYYDPVTELPNRTNFIERLKFSISRTKLLNRNLAVL 627

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F D+D FK +ND +G+PVGD+V+  ++ ++         + RLG +EF    +  + +E 
Sbjct: 628 FIDVDRFKYVNDTYGYPVGDEVLKVIAQRIKDAVREGDTIARLGSDEFGVVLVDIAHKE- 686

Query: 193 AILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKS 250
             +   + KI  N +  I   G  + +T+S GIA           ++ +A+ AL  AK+ 
Sbjct: 687 -DIPKVMDKIFSNMEKPIEVEGKEVVLTLSVGIAVFPEDGTEAEDLVKKAEMALAHAKED 745

Query: 251 GRNRVVCFSDIEN 263
            RN    F +  N
Sbjct: 746 VRNSYQFFREDMN 758


>gi|152967680|ref|YP_001363464.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216]
 gi|151362197|gb|ABS05200.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216]
          Length = 396

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 93/236 (39%), Gaps = 20/236 (8%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE-NLSLVIISITISLLLGYISGSI 89
             + F   +A  +         + L       + L E   + ++  +T S L   +  + 
Sbjct: 118 LDLGFRSVVALPLVARGRVWGALDLYRREAGTWQLPELTWTRLLAQVTASYL---VMAAD 174

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQI 142
             E   +   ++  S  D L+GL N       L           E ++ +F D+D FK +
Sbjct: 175 RDEARRAERELAHHSAHDALTGLPNRVLLFDRLDRALAAARRRRESVACLFIDLDRFKAV 234

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA---ALGSSEQEAAI----L 195
           ND +GH  GD V+  ++ +L         + RL G+EF         SS +E +     +
Sbjct: 235 NDTYGHAAGDTVLVTVAHRLQAALRGEDTLARLAGDEFVLLCEDLPQSSPEELSHGLDGV 294

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
              LR+ +   +    +G  I ++ S GIA          ++  AD A+Y AK+ G
Sbjct: 295 VTRLRRALA--EPVACAGTEIVVSASIGIALSGEGTTPDDLLADADGAMYRAKREG 348


>gi|319780361|ref|YP_004139837.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166249|gb|ADV09787.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 253

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 90/158 (56%), Gaps = 3/158 (1%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           R+++ +  D ++G+LN  +F ++L      +++ +++  D D+FK INDNFGH  GD  +
Sbjct: 84  RLAEKASRDDMTGMLNRESFFAALDGSRRKSDRGALLIIDADHFKTINDNFGHLTGDDAL 143

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  +     +   +GR+GGEEF A  +G++EQEA  +A  +R+ +E  +       +
Sbjct: 144 LLIASAIQRGVRSGDVLGRIGGEEFGAFLVGATEQEAKRVAERIRREVELIRFRPVDERT 203

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
           I +T+S G      +  +S ++  AD+ LY AK  GRN
Sbjct: 204 IPLTVSIGGTVCGEEASVSELMRAADRRLYQAKHQGRN 241


>gi|312962947|ref|ZP_07777433.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas fluorescens
           WH6]
 gi|311282716|gb|EFQ61311.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas fluorescens
           WH6]
          Length = 337

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 58/203 (28%), Positives = 95/203 (46%), Gaps = 15/203 (7%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
            LE +   NLSL  +    +  L  +   +  +L I+ NR+  L+  D L+ + N     
Sbjct: 141 ALEQLEQRNLSLEALVAERTQELSRVHQQL--QLQINENRL--LAERDALTLIANRYRLQ 196

Query: 120 S-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
                       +   L+++  DID FK I D +GH VGD+++  + + L         +
Sbjct: 197 KVLLDECNRAQRFCLPLALIAIDIDNFKPIADRYGHAVGDQILLRVVECLESCVRPGDLL 256

Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232
            R G +EF      SS   A  LA ++   I N+ ++     S ++T+S G+AE    E 
Sbjct: 257 ARWGDDEFMVVLPESSLDTARALAENICLQIRNTPVH----DSFNVTLSLGVAEHLTDES 312

Query: 233 ISTIIYRADQALYVAKKSGRNRV 255
            + ++ RAD ALY AK +G+N V
Sbjct: 313 PAALMARADSALYRAKAAGKNSV 335


>gi|240140799|ref|YP_002965279.1| putative diguanylate cyclase (2 GGDEF motifs) [Methylobacterium
           extorquens AM1]
 gi|240010776|gb|ACS42002.1| putative diguanylate cyclase (2 GGDEF motifs) [Methylobacterium
           extorquens AM1]
          Length = 355

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 94/191 (49%), Gaps = 13/191 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----------GSYNEKLSIVFFD 135
           S S ++ L  +       S  D L+GL N  +F  SL              +  S++  D
Sbjct: 160 SRSEIEALRETLEATRLESLTDALTGLGNRKSFEESLRKSVDLQSASAQQGKPASLIVID 219

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAI 194
           ID FK+ ND +GH  GD+V+  ++  +    G     + R GGEEF      +   EA  
Sbjct: 220 IDSFKRFNDLYGHLTGDQVLRLVAIVMREHIGQKNATLARFGGEEFGIVLPETDRVEARA 279

Query: 195 LANDLRKIIENSQ-INISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           +A  +R  +   + +  S+G S+  +T+S G+A +   +   +++ RAD  L+ AK++GR
Sbjct: 280 IAERVRIGVTGRELVKRSTGESLGKVTVSLGVATQREDDNAVSLLERADACLFAAKRAGR 339

Query: 253 NRVVCFSDIEN 263
           NR +  +++EN
Sbjct: 340 NRTLDETEVEN 350


>gi|194333900|ref|YP_002015760.1| diguanylate cyclase [Prosthecochloris aestuarii DSM 271]
 gi|194311718|gb|ACF46113.1| diguanylate cyclase [Prosthecochloris aestuarii DSM 271]
          Length = 432

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 9/180 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           ++L +   ++ +L   D  + L N+  F   L         YN+ +S+   DID+FK  N
Sbjct: 246 QDLEMKNRKLDELFIKDEKTNLYNYRHFKEHLIGDVARAKRYNDLVSLAMLDIDHFKAYN 305

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH  GD+V+  +++ ++          R GGEEFA     +   +A  +   L ++I
Sbjct: 306 DANGHIAGDRVLQRIAEIILEECRHTDMPARFGGEEFAILFPRTDAAQARGIVVRLMEVI 365

Query: 204 ENSQINIS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                    + P   +TISAGIA   H  +   ++I  AD+ALY +K +GRN+V+ + +I
Sbjct: 366 CAEPFERERNQPGGRLTISAGIATFPHDAQGWYSLINNADRALYESKSTGRNKVINYEEI 425


>gi|197119468|ref|YP_002139895.1| response receiver-modulated diguanylate cyclase [Geobacter
           bemidjiensis Bem]
 gi|197088828|gb|ACH40099.1| response receiver-modulated diguanylate cyclase [Geobacter
           bemidjiensis Bem]
          Length = 458

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 8/177 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDY 138
             S+  +    YN    L  ID L+GL N+                Y   LS++F DID 
Sbjct: 271 QASLALDNAARYNFAKDLLYIDELTGLYNYRYLDVVLERELKRSERYGSNLSVLFLDIDL 330

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND FGH +G +V+  +   L         V R GG+E+    + +    AAI+A  
Sbjct: 331 FKSVNDTFGHLIGSRVLREIGSLLRKSVRDVDAVIRYGGDEYTIVLVETGLDGAAIVAER 390

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNR 254
           +RK++E    + + G SI +T+S G A         + ++  ADQA+Y  K +G+N+
Sbjct: 391 IRKMVEAHTFSKADGLSIKLTVSLGYACSPDDASTKTELLEMADQAMYRGKAAGKNK 447


>gi|91794309|ref|YP_563960.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91716311|gb|ABE56237.1| GGDEF domain [Shewanella denitrificans OS217]
          Length = 292

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 67/214 (31%), Positives = 96/214 (44%), Gaps = 24/214 (11%)

Query: 64  ILVENLSLVIISITISLLLGY----------ISGSILKELF----ISYNRISQLSRIDCL 109
           + ++ L ++   I + +L  Y          +    L+EL         ++  LS  D L
Sbjct: 76  VAIQILGILAAIIFVLMLRNYNIKIYSQALEVKNKQLEELRGNLERKNQQLDFLSAHDPL 135

Query: 110 SGLLNHSAF----ISSLGSYN--EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           + L N   F    I      N  E + ++  D+DYFK INDNFGH  GD V+A L++ L+
Sbjct: 136 TKLYNRHYFNSQYIDKKQDENNVEPMCLIIMDVDYFKLINDNFGHNTGDIVLAKLAELLI 195

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                   V R GGEEF       + Q A  L   L   I+ +Q        + IT S G
Sbjct: 196 NTVRGSDVVTRWGGEEFIILCPKLALQSACELCQRLAIQIQQTQFT----DGVKITCSFG 251

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +A+R   E I   + RAD+ALY AK  GRN+   
Sbjct: 252 VAQREANESILMCLDRADKALYRAKDGGRNQTCI 285


>gi|313680714|ref|YP_004058453.1| diguanylate cyclase with gaf sensor [Oceanithermus profundus DSM
           14977]
 gi|313153429|gb|ADR37280.1| diguanylate cyclase with GAF sensor [Oceanithermus profundus DSM
           14977]
          Length = 731

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 13/163 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149
            N + + +  D L+GL N  AF         S   Y   LSI+  D+  FK++ND +GH 
Sbjct: 567 RNLLERAAHTDPLTGLPNRRAFDREFTVMWQSAERYGYPLSILVMDLSRFKEVNDRYGHA 626

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
            GD+V+  +   L  +      + R GG+EFA     ++   A   A    + IE   + 
Sbjct: 627 AGDQVLVRVGRVLSEITRNGDRIFRWGGDEFAVLMPHTALLGAVRAAERYARAIEQVCVE 686

Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSG 251
            +      + ++ G A         S +I  AD  +Y AK+SG
Sbjct: 687 TTC-----VGVNIGAAAFPEDTRDPSELIKLADARMYQAKRSG 724


>gi|303238578|ref|ZP_07325112.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acetivibrio cellulolyticus CD2]
 gi|302593976|gb|EFL63690.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acetivibrio cellulolyticus CD2]
          Length = 861

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 14/188 (7%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----------LSIVF 133
           ++   +  +  +  +I  ++  D L+ L N       L                 + ++ 
Sbjct: 411 VTLLDISHIKKTEEQIKYIAYHDSLTDLPNRYMLNDYLDKVISCGNPDNSTNTAVIGVML 470

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK IND+ GH  GD V+   + +L    G    V R GG+EF      +  ++ A
Sbjct: 471 VDLDRFKIINDSLGHSFGDIVLKEAAQRLKSCVGENDVVFRYGGDEFVIVLPDTDTRKCA 530

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
             A  + ++    Q  I +      TIS GI+           +I  AD A+YV K  GR
Sbjct: 531 ETAKRITQLF--GQPFIINDQKTFSTISVGISLFPEDGSNAEMLIKNADVAMYVVKDIGR 588

Query: 253 NRVVCFSD 260
           N    + +
Sbjct: 589 NNYQFYHE 596


>gi|316935188|ref|YP_004110170.1| hemerythrin-like metal-binding domain-containing diguanylate
           cyclase [Rhodopseudomonas palustris DX-1]
 gi|315602902|gb|ADU45437.1| diguanylate cyclase with hemerythrin-like metal-binding domain
           [Rhodopseudomonas palustris DX-1]
          Length = 506

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 8/180 (4%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYF 139
           + + ++EL     ++   S  D L+ + N   F +SL         +  LS++  D+D F
Sbjct: 159 AAAQVRELQHQLEQVRLESMTDPLTEVGNRKFFETSLARLIAAGETSGPLSLLIIDLDNF 218

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQ ND  GH VGD V+   +  +         V R GG+EFA    G+  ++A +L   +
Sbjct: 219 KQFNDRHGHVVGDDVLRLAAATIKHTCRRDDVVCRYGGDEFAIVLPGTGLRDALLLGEKI 278

Query: 200 RKIIENSQINISSGPS--IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           R  I   +++  S       + IS G AE    E +   + RAD  +Y AK++ R+R +C
Sbjct: 279 RAAIAARELHRRSTHESLGRLLISIGSAEFRRGETVEDFVERADHWMYAAKQASRSRSLC 338


>gi|226953553|ref|ZP_03824017.1| diguanylate cyclase [Acinetobacter sp. ATCC 27244]
 gi|226835731|gb|EEH68114.1| diguanylate cyclase [Acinetobacter sp. ATCC 27244]
          Length = 472

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 105/250 (42%), Gaps = 17/250 (6%)

Query: 22  FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY---ILVENLS--LVIISI 76
             P   +I+ ++ +  F  T+I   +       ++  Y L Y    L   +S  L +I +
Sbjct: 224 LYPIAPLIWCALRYQHFSVTIISSISCAFIIYHVSQNYLLLYPDNYLNNTISTRLGLIMM 283

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------- 129
           TI+ L      SI K        +      D L+  L    F+ SL    E+        
Sbjct: 284 TIAPLT---VSSINKVRSKLIEELQHTIAHDELTSSLTRRQFLQSLQILQEQAQNAGHTS 340

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           + +  DID+FK IND++GH +GD+ +         +       GRLGGEEFA     ++E
Sbjct: 341 AFLMLDIDHFKHINDSYGHQIGDRALQHFVKTTQTLLNPQDLFGRLGGEEFAIFIANTNE 400

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVA 247
             A   A  +R+ +  S I +       I  S GI     ++      +   AD ALY A
Sbjct: 401 SVAYQCAEKIRQHVSESPIQLEHAQIFSIQTSIGICINTPEKNYSTEQLFKHADDALYRA 460

Query: 248 KKSGRNRVVC 257
           K+ GRN+VV 
Sbjct: 461 KRQGRNQVVI 470


>gi|254516981|ref|ZP_05129039.1| ggdef domain protein [gamma proteobacterium NOR5-3]
 gi|219674486|gb|EED30854.1| ggdef domain protein [gamma proteobacterium NOR5-3]
          Length = 318

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 11/173 (6%)

Query: 95  ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147
           I +  + ++   D L+GL N  +        +S    +N  LS++  D+D+FK+IND+ G
Sbjct: 143 IEFQTLQEMVTQDGLTGLGNRLSLHQWIERELSRTRRHNSPLSLMMIDVDHFKKINDSLG 202

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR---KIIE 204
           H  GD V+  ++            + R GG+EF      +  Q A   A  +R     I 
Sbjct: 203 HIGGDHVLKTIASVFKRSTRGSDLLFRFGGDEFTILLPHTDLQGAQDAARQIRNNLAQIS 262

Query: 205 NSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + +  + +  +     +S GIA+    +  ++++ RAD  LY AK  GR  V 
Sbjct: 263 DEEFGLGNEWTHARPDVSIGIADYRPGDTEASLLQRADTRLYHAKAQGRGAVC 315


>gi|160899438|ref|YP_001565020.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Delftia acidovorans SPH-1]
 gi|160365022|gb|ABX36635.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Delftia acidovorans SPH-1]
          Length = 820

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 12/181 (6%)

Query: 89  ILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138
           +L+++      + QL   +  D L+GL N   F   L              ++++ D+D 
Sbjct: 358 VLRDVSREQQYLDQLSWHASHDGLTGLENRVEFERRLQRLLNQGQHRLRPSAVLYMDLDQ 417

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IN+  GHP GD+++  +S  L+        + RLGG+EF         + A  +A  
Sbjct: 418 FKLINETCGHPAGDEMLCEVSRLLLHNLRETDTLARLGGDEFGVLLENCPPEPALRIAEK 477

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           LR+  E   ++      +   +S G+     + +    ++  AD A Y AK+ GRNR+  
Sbjct: 478 LRQATEALHVHW-GKQVLRTGLSIGLVHIGGEVQSAQDLLRMADMACYRAKERGRNRIYV 536

Query: 258 F 258
           +
Sbjct: 537 Y 537


>gi|326793993|ref|YP_004311813.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326544757|gb|ADZ89977.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 373

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 111/230 (48%), Gaps = 7/230 (3%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93
            FSI +  ++F A+           +    ++   L +V +S      + + +G IL+E 
Sbjct: 137 IFSILLCAILFYADDLHGGHNYDEIFA-SRVMYSFLVVVFLSTIYEYSMSHYNG-ILRE- 193

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
             S N + + +  D L+ LLN       L +  + +  I+  DID+FKQINDN+GH  GD
Sbjct: 194 --SSNHLEKKAITDELTKLLNRYGMYEKLETPVSRRRHILLMDIDHFKQINDNYGHEAGD 251

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
             +A ++  +     +     R GGEEF      SS +EA   A  +   +    ++   
Sbjct: 252 LYLAKVAQVITSTVSSEGIAARWGGEEFLVLLSTSSLEEAKHWARRVCSDVAKLSVSFK- 310

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           G  +  T+S GI++   ++ I   I +AD ALY+AKK GRNR V   D+E
Sbjct: 311 GHELKATMSIGISQLGVEDKIHDSISQADAALYMAKKEGRNRYVTAVDLE 360


>gi|313496937|gb|ADR58303.1| Response regulator receiver modulated diguanylate cyclase
           [Pseudomonas putida BIRD-1]
          Length = 451

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 87/183 (47%), Gaps = 11/183 (6%)

Query: 84  YISGSILKELFISYNRISQL-SR--IDCLSGLLNHSAFIS-------SLGSYNEKLSIVF 133
           + S  ++  +     R   L +R   D L+GL NH+  +              + LS   
Sbjct: 266 FRSRHLITTVRNRAARARHLKARMVRDSLTGLYNHTHILQLLEDCSFRARREQQPLSFAM 325

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID+FK+IND  GHP+GD+VI  L+  L        F+GR GGEEFA     ++   A 
Sbjct: 326 LDIDHFKKINDRHGHPMGDRVIKSLALFLKQRLRKTDFIGRYGGEEFAIVMPNTALDAAH 385

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            + +++R+      +  +    +  T SAG+ +        T+   AD+ALY AK +GRN
Sbjct: 386 KVLDEIRRRFAEI-LYPAQPRDLQCTFSAGVVQLDEGLDALTMASAADEALYRAKHAGRN 444

Query: 254 RVV 256
            VV
Sbjct: 445 CVV 447


>gi|238028235|ref|YP_002912466.1| diguanylate cyclase/phosphodiesterase [Burkholderia glumae BGR1]
 gi|237877429|gb|ACR29762.1| Diguanylate cyclase/phosphodiesterase [Burkholderia glumae BGR1]
          Length = 789

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 100/208 (48%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVIIS-ITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNH---- 115
           +Y    N+ L++ S IT+++L  + ++  ++ +L      ++ L+  D L+GL N     
Sbjct: 289 DYHHTRNIYLLMTSFITLAMLAFFGVATGLIGKLLGREREMTHLAEYDLLTGLANRYTTL 348

Query: 116 SAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            A  + +      ++L+I+F D+D FK +ND  GH  GD V+   + +L         + 
Sbjct: 349 RALRNEVAQPSSLKRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVADQGTLA 408

Query: 174 RLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EF     G  +E  A  LA  + ++    +     G +  +  S GIA      E
Sbjct: 409 RIGGDEFVVVVKGDGAEARAVRLAESVIRMF--GKPFDVRGSTFVLHASIGIALHSVANE 466

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +AD A+Y AK +G+N    ++
Sbjct: 467 SEIDLLKKADLAMYSAKDAGKNCYQFYA 494


>gi|297584147|ref|YP_003699927.1| diguanylate cyclase/phosphodiesterase [Bacillus selenitireducens
           MLS10]
 gi|297142604|gb|ADH99361.1| diguanylate cyclase/phosphodiesterase [Bacillus selenitireducens
           MLS10]
          Length = 775

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 10/168 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           +L  + N++  +++ D L+GL N    ++ L          NE  +++F D+D FK +ND
Sbjct: 336 DLQKALNKMEHVAKYDHLTGLPNRRMIVNELEMLIDASEKKNETFALLFIDMDRFKTVND 395

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+++  ++++L         +GR GG+EF        E+E   +A  ++    
Sbjct: 396 TLGHKAGDELLKQVAEKLKQSVRDADKIGRYGGDEFIILLKDVDEKEIRQVATRIKHTF- 454

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSG 251
                   G + + + S G++        +  +I  AD A+Y AK SG
Sbjct: 455 -IHAFNLEGKAFYTSPSIGVSMYPEDGTSAIDLIKYADIAMYDAKSSG 501


>gi|78486259|ref|YP_392184.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2]
 gi|78364545|gb|ABB42510.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           [Thiomicrospira crunogena XCL-2]
          Length = 893

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 59/189 (31%), Positives = 88/189 (46%), Gaps = 13/189 (6%)

Query: 81  LLGYISGSILKELFIS-YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132
           ++G+I       + I+   R   LS  D L+GL N   F       I+        L+I 
Sbjct: 704 VMGHIKQVWATRVDITDRKRNEHLSITDDLTGLYNRRYFNQVIEREINRAKREQRSLAIA 763

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQE 191
             DID+FK+IND +GH  GD+V+  ++            FV R+GGEEF   +L  SE E
Sbjct: 764 MMDIDFFKKINDTYGHQEGDQVLKQVATVFESSFHRATDFVFRMGGEEFLVISLFKSEAE 823

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAK 248
                  L   +++  I  ++     +TIS G A  C  + +     +    DQ LY AK
Sbjct: 824 FQTYLEQLCLKVKSLGIENAASSEGVLTISVG-AIYCESDALTNSEKLYKVVDQRLYQAK 882

Query: 249 KSGRNRVVC 257
           ++GRN+VV 
Sbjct: 883 QTGRNKVVM 891


>gi|89100093|ref|ZP_01172962.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89085183|gb|EAR64315.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 609

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 18/178 (10%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQ 141
           ++ S+L+E       + ++   D L+ L + +     +      + + + +  DID FK 
Sbjct: 439 LTNSMLRE------ELEKMVVTDHLTRLYSRNYLDERIHQSLSEDAEGAFILVDIDNFKS 492

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           +ND +GH VGD+VI  ++  +V    +     R GGEE A      S +    +A  + +
Sbjct: 493 VNDTYGHQVGDEVIVQVAGIIVNSIRSTDVAARWGGEELAVYLPSISLETGVAIAERIVR 552

Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +  S   +       +TIS G++      ++  S +  RAD+ALY AK+SG+N+VV 
Sbjct: 553 KVSESTNPV-------VTISCGVSHWNVEREDSYSRLFKRADKALYTAKESGKNQVVV 603


>gi|320159182|ref|YP_004191560.1| GGDEF domain-containing protein [Vibrio vulnificus MO6-24/O]
 gi|319934494|gb|ADV89357.1| GGDEF domain [Vibrio vulnificus MO6-24/O]
          Length = 607

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 5/164 (3%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
             +++ L++ D L+G+LN  A I +       N+K+ +   D+D+FK IND +GH  GDK
Sbjct: 432 EQQLTVLAQQDSLTGVLNRRALIEAANIQRRVNDKIGVCMMDLDHFKTINDEYGHAAGDK 491

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS- 212
           V+      +          GR+GGEEF      ++  +  ++A  +R   E    ++   
Sbjct: 492 VLKAFCQLVSQEIRQQDLFGRVGGEEFCLVLPDANLAQTLLIAERIRLSAEMVLGSVLEL 551

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  + +T+S G A           ++ AD+ALY AK  GRN+V 
Sbjct: 552 GDDMKVTVSIG-ATLWQCSNFERALFIADKALYRAKHEGRNQVQ 594


>gi|227112900|ref|ZP_03826556.1| hypothetical protein PcarbP_08049 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 504

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 11/181 (6%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
           L  S     QL+  D L+ L N   F   +            K++++F D+D FKQIND+
Sbjct: 326 LRRSEEHYRQLAHYDSLTSLANGLTFAEQMEQAILLSKQTGRKIALMFLDLDKFKQINDS 385

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIE 204
           FGH VGD ++   + ++         V R  G+EF     G  E      +A+ +   + 
Sbjct: 386 FGHAVGDLLLKEAAARMRGAVRDSDTVYRRSGDEFIILLQGIKEIDNTLYVADKIHNAL- 444

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
           N    I +G  + I+ S GIA    H     T+   AD A+Y AK  GR++   + D+++
Sbjct: 445 NKPFEI-NGKKLDISCSIGIALYPEHGSDSLTLAINADSAMYQAKAMGRSQTQIYHDMDD 503

Query: 264 N 264
            
Sbjct: 504 R 504


>gi|37677089|ref|NP_937485.1| hypothetical protein VVA1429 [Vibrio vulnificus YJ016]
 gi|37201634|dbj|BAC97455.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 607

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 5/164 (3%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
             +++ L++ D L+G+LN  A I +       N+K+ +   D+D+FK IND +GH  GDK
Sbjct: 432 EQQLTVLAQQDSLTGVLNRRALIEAANIQRRVNDKIGVCMMDLDHFKTINDEYGHAAGDK 491

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS- 212
           V+      +          GR+GGEEF      ++  +  ++A  +R   E    ++   
Sbjct: 492 VLKAFCQLVSQEIRQQDLFGRVGGEEFCLVLPDANLAQTLLIAERIRLSAEMVLGSVLEL 551

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  + +T+S G A           ++ AD+ALY AK  GRN+V 
Sbjct: 552 GDDMKVTVSIG-ATLWQCSNFERALFIADKALYRAKHEGRNQVQ 594


>gi|303245663|ref|ZP_07331946.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio fructosovorans JJ]
 gi|302492926|gb|EFL52791.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio fructosovorans JJ]
          Length = 818

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 11/186 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137
           +  S + +   +   +  L+  D L+ L N + F+  L          +   +++F D+D
Sbjct: 357 LVFSDVTKDKATEKLLKNLAYSDALTALPNRALFLDRLEREISIGTRRSRGFALLFLDLD 416

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA 196
            FK IND+  H VGD+V++ ++ ++         + R+GG+EF       +    AA L 
Sbjct: 417 NFKYINDSLSHSVGDQVLSLIAGRMRACLRDEDTLARMGGDEFTVILRETTDPAVAARLG 476

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             L      S+     G +I +  S G+A           ++  AD A+Y+AK  G  RV
Sbjct: 477 EKLVDA--ASRPLKVEGAAIEVGASIGVALFPADGRDSDALMRNADTAMYLAKSEGGGRV 534

Query: 256 VCFSDI 261
             F   
Sbjct: 535 RFFEPA 540


>gi|13472106|ref|NP_103673.1| hypothetical protein mll2297 [Mesorhizobium loti MAFF303099]
 gi|14022851|dbj|BAB49459.1| mll2297 [Mesorhizobium loti MAFF303099]
          Length = 697

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 70/269 (26%), Positives = 117/269 (43%), Gaps = 32/269 (11%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS 86
           FM+  ++FF+      I  + I LF + +  ++ +   L   +   I  ++      Y++
Sbjct: 171 FMMSANLFFTFSFKVSIITSTIILFILYVVNYF-VPASLTYKMVFGIFYVSCFTFTSYVN 229

Query: 87  GSILKELF--------------ISYNR---ISQLSRIDCLSGLLNHSAFISSLGSY---- 125
             + +E +               +  R   + +LSR D L+GL N  A    L  Y    
Sbjct: 230 WKLNEERYNVFLNALEAKIQHKEATERGKALLRLSRTDPLTGLENRRAIDEKLRDYWSDW 289

Query: 126 ---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFA 181
                K + +  D+D+FK+ ND +GH  GD+ +  +++ L  +       +GR GGEEF 
Sbjct: 290 QKLGSKFAAILIDVDFFKKFNDCYGHQEGDRCLIHVANALSDLIKNYNGSIGRYGGEEFI 349

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINIS---SGPSIHITISAGIA--ERCHKEPISTI 236
             A    + + A LA  + + +EN  I       G SI +T S G A         +  I
Sbjct: 350 VLARMDKKDQVAELAEAICRTVENLAITHELRRDGISI-VTASVGAAFTRTQAGAKLEKI 408

Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENNT 265
           I+ AD+ALY+AK  GRN    F   +  +
Sbjct: 409 IHEADRALYLAKAGGRNCARLFDPTDPQS 437


>gi|320653792|gb|EFX21866.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
          Length = 476

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 22/258 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LV 66
            + +WL        F+   + I+  +    F A +  I+ +F+    ++ +Y    I +V
Sbjct: 223 MIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVV 282

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             L++++I +            I   L ++ N    ++  D L+ + N + F + L    
Sbjct: 283 SKLTVMVIFMC----------HIFSALRVTKN----IAHRDPLTNIFNRNYFFNELTVQS 328

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +      ++  DID+FK++ND +GHPVGD+VI  + + +         + R+GGEEF 
Sbjct: 329 ASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFG 388

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYR 239
                   + A  LA  +R+ +E    +         +TIS G +  + +    + I   
Sbjct: 389 VLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQGNALNPNEIYRL 448

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK++GRN+VV 
Sbjct: 449 ADNALYEAKETGRNKVVV 466


>gi|289675549|ref|ZP_06496439.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 832

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 82/184 (44%), Gaps = 12/184 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           E + + N+++ L+  D L+ L N           IS   S  + +S++F D+D FK +ND
Sbjct: 381 ERYDAKNKLTYLAENDSLTRLPNRWFLSNYLREIISRTTSAPDAVSVIFIDLDRFKAVND 440

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS--SEQEAAILANDLRKI 202
             GH VGD+++     +L         V RLGG+EF+        SE     LA  +   
Sbjct: 441 TMGHSVGDQLLIQAGRRLRDCIDENSVVARLGGDEFSIVVTHKVYSESLIKSLATQVVDA 500

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +   +     G  I ++ S GIA           I+  AD A+Y AKKSGRN    +   
Sbjct: 501 L--GKPFNLGGQDIFVSASVGIANYPFDGRDTGVILKNADTAMYHAKKSGRNNFKFYDAR 558

Query: 262 ENNT 265
            N +
Sbjct: 559 MNES 562


>gi|238752235|ref|ZP_04613715.1| Diguanylate cyclase [Yersinia rohdei ATCC 43380]
 gi|238709503|gb|EEQ01741.1| Diguanylate cyclase [Yersinia rohdei ATCC 43380]
          Length = 394

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 13/178 (7%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQIND 144
           + L +  + ++  +  D L+GL N + F   L          E  +++F D D FK IND
Sbjct: 207 RNLTLENDSLAHRAAHDSLTGLANRAFFEGRLIRTLKECKSKEHAAVLFLDGDRFKDIND 266

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKII 203
           N+GH  GD V+  ++D++  +      V RLGG+EFA       +  +   +A+++   +
Sbjct: 267 NYGHATGDIVLTTIADRIRALLRESDLVARLGGDEFAILLAPIYNTDDVLTIADNIIDSM 326

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS----GRNRVV 256
               I + +G  I  ++S GIA    H +    ++ RAD+A+Y AKK     GR  V 
Sbjct: 327 AQ-PIILPNGSEIITSLSIGIAIYPDHAQTPDELLRRADEAMYQAKKGFQPCGRGTVQ 383


>gi|225850678|ref|YP_002730912.1| signal transduction response regulator [Persephonella marina EX-H1]
 gi|225645562|gb|ACO03748.1| signal transduction response regulator [Persephonella marina EX-H1]
          Length = 430

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 65/195 (33%), Positives = 98/195 (50%), Gaps = 16/195 (8%)

Query: 78  ISLLLGYISGSILKELFISYNRIS------QLSRIDCLSGLLNHSAFISSLGSY------ 125
           I+LL  YI+   L   F+S   +       + + +D L+G+LN       L +       
Sbjct: 237 INLLFDYINLQKLSAQFLSLLTVKIAVRSVEDANVDPLTGVLNRRPMEFILNNQYQISKI 296

Query: 126 -NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
            N  +SI   DID FK+IND++GH VGD VI  +S  L         + R GGEEF    
Sbjct: 297 SNRPVSIALLDIDDFKKINDSYGHLVGDCVIKQVSSILQKSLRKSDLIFRFGGEEFLIFM 356

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQ 242
             + +++A  +   LRK IE   I I    +I +T+S G+  A     E ++ II RAD+
Sbjct: 357 PFTEKRDAFKVMEKLRKKIEEKDI-ICGKNTIKVTVSVGVEGATLHPNETVNDIIERADK 415

Query: 243 ALYVAKKSGRNRVVC 257
            +  AK++G+N+VV 
Sbjct: 416 KMLRAKRTGKNKVVI 430


>gi|170740237|ref|YP_001768892.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium sp. 4-46]
 gi|168194511|gb|ACA16458.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium sp. 4-46]
          Length = 1034

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 82/177 (46%), Gaps = 9/177 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQIN 143
            + E   + +RI  L++ D L+ L N   F   L +          ++++ D+D FK +N
Sbjct: 590 DVTEQQQAEDRIRFLAQHDPLTRLPNRVLFRERLDAMMRADAPDATALLYLDLDAFKNVN 649

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GHPVGD ++A +  +L    G    V RLGG+EFA A     E  A  LA  +  I 
Sbjct: 650 DTLGHPVGDALLAAVGARLGACVGEGGVVARLGGDEFAVAC-AEGEAAAQALATRI--IA 706

Query: 204 ENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           + S     +G ++ +  S GIA          T++  AD ALY AK  GR     F 
Sbjct: 707 QLSAPYALAGRTVQVGASVGIAVSGPEARDADTLLRHADMALYEAKGRGRGLACVFE 763


>gi|315127139|ref|YP_004069142.1| GGDEF domain-containing protein [Pseudoalteromonas sp. SM9913]
 gi|315015653|gb|ADT68991.1| GGDEF domain-containing protein [Pseudoalteromonas sp. SM9913]
          Length = 298

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 11/169 (6%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149
           YNR+ +L+  D L+GL N S F   L              S++  D+D FKQ+NDN+GH 
Sbjct: 134 YNRVLRLATKDSLTGLNNRSQFNDMLLQKLENHRRNGHSFSLMLLDLDNFKQVNDNYGHK 193

Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209
           +GD V+   +  L         V R GG+EF+      +     ++A  + +++ NS I 
Sbjct: 194 IGDDVLIEFAAVLSSSIRGTDSVFRFGGDEFSILIEDPAFTTNKVVAERIMRLVRNSPIM 253

Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                  ++T S G       +  + I  RAD+ LY AK SGRN    +
Sbjct: 254 ----SKYNVTASIGFTLTNSDDCQNEIFSRADKGLYKAKASGRNCAKAY 298


>gi|160892887|ref|ZP_02073676.1| hypothetical protein CLOL250_00418 [Clostridium sp. L2-50]
 gi|156865446|gb|EDO58877.1| hypothetical protein CLOL250_00418 [Clostridium sp. L2-50]
          Length = 382

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 73/256 (28%), Positives = 105/256 (41%), Gaps = 22/256 (8%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL-EYILVENLSLVIISITIS 79
           +  P   ++  ++F +  I  V+ +       I     Y L E+  +   + V  S  + 
Sbjct: 128 ALLPMVSIVITAVFANQNITLVMTLLTFCSLIINDIRLYSLFEWKEISFGAYVTASFGLV 187

Query: 80  LLLGYISGSI---LKELFIS--------YNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125
           L+L  ++  +    KEL  S         N +++L R D L+GL N  +F  SL      
Sbjct: 188 LVLSVVTFLLNMHTKELMESIGNFTVRQMNLMTEL-RKDPLTGLYNRRSFEESLEKEIQR 246

Query: 126 ----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                EK  I  FDID+FK +ND +GH  GD VI  L   L           R GGEEF 
Sbjct: 247 TEETGEKAYIAIFDIDHFKNVNDTYGHSNGDVVIKALCKMLKEKSKDYGLAFRYGGEEFV 306

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                    +   +  D+R           +     IT S G+AE    E       RAD
Sbjct: 307 ILFNNIELPKVINVVEDVRTEFRCYYFQFMNNS--GITCSCGVAEYSKGESAKAWFNRAD 364

Query: 242 QALYVAKKSGRNRVVC 257
            +LY AK++GRNR V 
Sbjct: 365 NSLYQAKEAGRNRTVV 380


>gi|218532240|ref|YP_002423056.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
 gi|218524543|gb|ACK85128.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4]
          Length = 369

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 94/191 (49%), Gaps = 13/191 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----------GSYNEKLSIVFFD 135
           S S ++ L  +       S  D L+GL N  +F  SL              +  S++  D
Sbjct: 174 SRSEIEALRETLEATRLESLTDALTGLGNRKSFEESLRKSVDLQSASAQQGKPASLIVID 233

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAI 194
           ID FK+ ND +GH  GD+V+  ++  +    G     + R GGEEF      +   EA  
Sbjct: 234 IDSFKRFNDLYGHLTGDQVLRLVAIVMREHIGQRNATLARFGGEEFGIVLPETDRVEARA 293

Query: 195 LANDLRKIIENSQ-INISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           +A  +R  +   + +  S+G S+  +T+S G+A +   +   +++ RAD  L+ AK++GR
Sbjct: 294 IAERVRIGVTGRELVKRSTGESLGKVTVSLGVATQREDDNAVSLLERADACLFAAKRAGR 353

Query: 253 NRVVCFSDIEN 263
           NR +  +++EN
Sbjct: 354 NRTLDETEVEN 364


>gi|300693249|ref|YP_003749222.1| signal transduction eal-ggdef domains transmembrane protein
           [Ralstonia solanacearum PSI07]
 gi|299075286|emb|CBJ34576.1| putative signal transduction eal-ggdef domains transmembrane
           protein [Ralstonia solanacearum PSI07]
          Length = 1178

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 22/187 (11%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQ 141
            + E  ++  R++Q +  D L+GL N +                  +  +   +ID FK 
Sbjct: 737 DVTEQEMTRARLAQHATADPLTGLPNRTLLADRVQQAVEMAARQRSRFYVALINIDRFKV 796

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA----AILAN 197
           +ND+ GH +GD+V+  ++++L     T   V R GG+ FA     +          + A 
Sbjct: 797 VNDSLGHLLGDEVLRRVAERLRDAADTVDTVARFGGDVFALVISHAGSHGVDLGFDLFAE 856

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +R            G  + +T S G+AE   H     T++  A+ A+Y AK++GRNR+ 
Sbjct: 857 PIR----------VEGHEVFVTASIGVAEYPAHGSNSETLVRHAEMAMYYAKQNGRNRLE 906

Query: 257 CFSDIEN 263
            F+   +
Sbjct: 907 FFAPEMD 913


>gi|258622462|ref|ZP_05717484.1| GGDEF family protein [Vibrio mimicus VM573]
 gi|258585162|gb|EEW09889.1| GGDEF family protein [Vibrio mimicus VM573]
          Length = 391

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 102/248 (41%), Gaps = 22/248 (8%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90
             + +S  I   I  + +F  Y   +      Y L+   +L II  T S         I 
Sbjct: 122 MGVVYSSAICLAITASVLFNHYQTGSTHIVHSYFLISLYALTIICNTASFFFSRAINYIH 181

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQIN 143
               +    I +L+ +D L+GL N  +F       L   N      +++F DID FK+IN
Sbjct: 182 T---LYQEGIEELAYLDPLTGLANRWSFESWATEKLKEQNGANTITALIFLDIDNFKRIN 238

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMF--------VGRLGGEEFAAAALGS-SEQEAAI 194
           DN+GH VGD+V+   + +L                 + R  G+EF     G  S ++   
Sbjct: 239 DNYGHDVGDQVLKHFAHRLRNNVRNKDRQTNQHDYSIARFAGDEFVLLLYGVRSLRDLDN 298

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253
           + + +  +  +           H+T+S G+A        +S +   AD+A+Y AK  G+N
Sbjct: 299 ILDRISCLFIDRYPETDMLN--HLTVSIGVAIYPKDAISLSELTRCADKAMYAAKHGGKN 356

Query: 254 RVVCFSDI 261
           +   + D 
Sbjct: 357 QYRYYHDA 364


>gi|576657|gb|AAA86986.1| ORF3 [Listonella anguillarum]
          Length = 206

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 57/200 (28%), Positives = 88/200 (44%), Gaps = 15/200 (7%)

Query: 71  LVIISITISLLLGYISGSILK----ELFISYNRISQLSRIDCLSGLLNHSAFISSLG--- 123
           L+ I I+   L+ Y      K     L   + ++   S  D L+ L N     +      
Sbjct: 4   LLFIIISFVSLISYRKYKKFKIKHSTLQQDHAKLEVESTHDPLTDLYNRRYLDTWFSYQE 63

Query: 124 --SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             + N+   +   D+DYFK+IND +GH  GD+V+  LS  L         + R GGEEF 
Sbjct: 64  ETTNNKPHLLAIIDVDYFKKINDQYGHEAGDEVLRALSTILKQQLRPEDLLMRWGGEEFV 123

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG-IAERCHKE---PISTII 237
                + E     +   +R  +E +     +G  + +T+S G IAE+   +      + +
Sbjct: 124 MII-STPEAHIKEVLERIRAQVEQTSFYW-AGQRVPVTVSIGAIAEKSVSKLALSWQSAM 181

Query: 238 YRADQALYVAKKSGRNRVVC 257
             ADQALY AK  GRNR + 
Sbjct: 182 ESADQALYQAKSEGRNRFIV 201


>gi|27367337|ref|NP_762864.1| GGDEF domain-containing protein [Vibrio vulnificus CMCP6]
 gi|27358906|gb|AAO07854.1| FOG: GGDEF domain protein [Vibrio vulnificus CMCP6]
          Length = 607

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 5/164 (3%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
             +++ L++ D L+G+LN  A I +       N+K+ +   D+D+FK IND +GH  GDK
Sbjct: 432 EQQLTVLAQQDSLTGVLNRRALIEAANIQRRVNDKIGVCMMDLDHFKTINDEYGHAAGDK 491

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS- 212
           V+      +          GR+GGEEF      ++  +  ++A  +R   E    ++   
Sbjct: 492 VLKAFCQLVSQEIRQQDLFGRVGGEEFCLVLPDANLAQTLLIAERIRLSAEMVLGSVLEL 551

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           G  + +T+S G A           ++ AD+ALY AK  GRN+V 
Sbjct: 552 GDDMKVTVSIG-ATLWQCSNFERALFIADKALYRAKHEGRNQVQ 594


>gi|330969773|gb|EGH69839.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 972

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 85/184 (46%), Gaps = 12/184 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           E + +  +++ L+  D L+ L N           IS   S  + +S++F D+D FK +ND
Sbjct: 521 ERYDAKKKLTYLAENDSLTHLPNRWFLSNYLREIISRKTSAPDAVSVIFIDLDRFKAVND 580

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS--SEQEAAILANDLRKI 202
             GH VGD+++     +L    G    V RLGG+EF+     S  SE     LA  + + 
Sbjct: 581 TMGHSVGDQLLIQAGRRLKDCIGENSVVARLGGDEFSIVVTHSVYSESLIKSLATHVVEA 640

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +   +     G  I ++ S GIA           I+  AD A+Y AKKSGRN    ++  
Sbjct: 641 L--GKPFNLGGQDIFVSASVGIANYPFDGRDTGVILKNADTAMYQAKKSGRNNFKFYNAR 698

Query: 262 ENNT 265
            N +
Sbjct: 699 MNES 702


>gi|325921785|ref|ZP_08183605.1| response regulator receiver modulated diguanylate cyclase
           [Xanthomonas gardneri ATCC 19865]
 gi|325547732|gb|EGD18766.1| response regulator receiver modulated diguanylate cyclase
           [Xanthomonas gardneri ATCC 19865]
          Length = 414

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 9/166 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+GL N   F+         L S ++ ++    DID+FK IND +GH  GD
Sbjct: 248 LQDLATRDFLTGLPNRRYFLEQSQRVIPTLLSQDQTVTAAMVDIDHFKHINDTWGHEAGD 307

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  ++  +         V R GGEEF     G     A+     LR+ I   ++ +  
Sbjct: 308 QALRAVAASVSGHARPQDLVARFGGEEFCLLVPGLDIANASDYFETLRERISALRVRVGD 367

Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
             ++ +T+S G+      +  +  ++  AD+ LY+AK  GRN+V  
Sbjct: 368 -ETLSMTVSIGVCIASEGDQSLHHLLNEADKHLYLAKAGGRNQVRL 412


>gi|325474704|gb|EGC77890.1| GGDEF domain-containing protein [Treponema denticola F0402]
          Length = 1399

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 85/175 (48%), Gaps = 11/175 (6%)

Query: 93   LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
            L +   R  Q +  D L+G      F       I +L + N K S++ +D+D FK IND 
Sbjct: 1054 LLVESKRFQQSASYDTLTGAYTRKYFEVFFKNIIKNLYNSNSKFSLILYDLDKFKNINDT 1113

Query: 146  FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            +GH VGD V+  ++  ++        +GR GGEEF      +  Q+A   A   RK IEN
Sbjct: 1114 YGHLVGDIVLKRVTQTILDSLSQGQILGRYGGEEFTVILPDTDSQKALKTAEYFRKKIEN 1173

Query: 206  SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                        ITIS GIA    H +  S ++  ADQALY +K +GRN+   ++
Sbjct: 1174 LVFTEFDTA---ITISLGIATFPEHGKTTSELLSNADQALYHSKNTGRNKSTVWA 1225


>gi|299771420|ref|YP_003733446.1| response regulator [Acinetobacter sp. DR1]
 gi|298701508|gb|ADI92073.1| response regulator [Acinetobacter sp. DR1]
          Length = 472

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 110/248 (44%), Gaps = 17/248 (6%)

Query: 22  FSPHTFMIYFSIFF-SIFIATVIFIANIFLFYI---GLTPFYGLEYIL-VENLSLVIISI 76
             P   +I+ +I +  I +A +  + + ++ Y         Y  +Y     ++ + +I +
Sbjct: 224 LYPIAALIWCAIRYKPIVVALITSLTSAYIIYHVSGHYLLLYPNDYFSNTISIRIGLIMM 283

Query: 77  TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------- 129
           TI+ L       +  EL     ++      D L+  L    F+ S+    EK+       
Sbjct: 284 TIAPLTVSSISVLHSELI---QKLQHAIAHDELTSSLTRRQFLQSVRLLQEKVHKENKTS 340

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           +    D+D+FKQ+NDN+GH +GD+ +      +  +      +GR GGEEFA     +++
Sbjct: 341 AFFMLDVDHFKQVNDNYGHQIGDRALQTCVTTIQNILHPHDLLGRFGGEEFAIFIADTTK 400

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVA 247
           + A  LA  +R  I    I I     I I +S GI+         I  +   AD ALY A
Sbjct: 401 ESAFDLAEQIRIKISQQPIYIYGKLPIFIQVSIGISLYSPSSHRAIENLFKEADDALYQA 460

Query: 248 KKSGRNRV 255
           K+ GRNRV
Sbjct: 461 KRQGRNRV 468


>gi|293604739|ref|ZP_06687139.1| diguanylate cyclase [Achromobacter piechaudii ATCC 43553]
 gi|292816908|gb|EFF75989.1| diguanylate cyclase [Achromobacter piechaudii ATCC 43553]
          Length = 413

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 98/244 (40%), Gaps = 12/244 (4%)

Query: 20  ESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLT-PFYGLEYILVENLSLVIISITI 78
           + +   T  +   +  +IF    +    + ++  G   P   L+        +V  S+T+
Sbjct: 138 QRWRIRTPGVALYLMLAIFGLAALHAMRVLVYGSGWAEPVSLLQPSAWGLFFIVCGSVTV 197

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131
             L   +   +   L     ++      D L+   +  + +  L             L++
Sbjct: 198 PALFLALLLLVQTWLS---EQMQAALTFDSLTHAYSRRSILDELERELLRCARSGSPLAV 254

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID+FK IND +GH  GD  +   S             GRLGGEEF    +      
Sbjct: 255 LVLDIDHFKSINDRYGHAAGDTALRHFSKVAQNAVRASDRFGRLGGEEFVLLMVDCDPAR 314

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
           A + A  +   + ++ + +  G  + +T S G+A     +    I+ RAD ALY AK+ G
Sbjct: 315 ALVHAQRVCDALRDTPLYL-QGMEVPLTASGGLATYQPGDSADVILARADVALYRAKEQG 373

Query: 252 RNRV 255
           R+RV
Sbjct: 374 RDRV 377


>gi|254562835|ref|YP_003069930.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens
           DM4]
 gi|254270113|emb|CAX26103.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL), with
           PAS sensor, signal transduction histidine kinase and
           methyl-accepting chemotaxis domains; putative
           membrane-associated protein precursor [Methylobacterium
           extorquens DM4]
          Length = 922

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 7/176 (3%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNF 146
           + E   +   + +L+  D L+ L N   F           + L+++  D+D FK +ND F
Sbjct: 450 VTEQVRAQEELRRLAYQDPLTDLPNRRGFWEMTAGALESGQPLAVLLLDLDGFKHVNDTF 509

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIEN 205
           GH  GD+++   + +L    GT   + RLGG+EF A   G+S    A   A  +   +  
Sbjct: 510 GHGAGDELLREAATRLAQALGTDGTLARLGGDEFVALLAGASVSASAGTTARRMLGSLSE 569

Query: 206 SQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
               I  G  + I  SAG  +A    +     ++  AD ALY AK +G   V  F+
Sbjct: 570 RSFPIR-GHVLPILASAGVVVATAGEQTNPEKLLANADLALYAAKAAGGGVVRTFT 624


>gi|227822860|ref|YP_002826832.1| GGDEF family protein [Sinorhizobium fredii NGR234]
 gi|227341861|gb|ACP26079.1| GGDEF family protein [Sinorhizobium fredii NGR234]
          Length = 788

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 14/189 (7%)

Query: 83  GYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132
           G IS S++ +   L  + +R    +  D L+GLLN   F ++L            +L+ +
Sbjct: 325 GEISLSVMTDVTALKQAESRNHTQAITDHLTGLLNRQGFENALDEAILSADQCGMQLACL 384

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE- 191
           F D+D FK INDNFGH  GD V+    +++         + RLGG+EFA     +     
Sbjct: 385 FIDLDRFKWINDNFGHAAGDAVLRQTVERIRAALRPEDVIARLGGDEFAILIAATDVAVL 444

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250
           A+ +   +   +        +G  + ++ S G++    H    S ++ +AD A+Y  K+ 
Sbjct: 445 ASEIGESICAALHEPMP--ITGNELFVSASVGVSVYPAHASGASDLLLKADMAMYARKRD 502

Query: 251 GRNRVVCFS 259
           G+N +  F 
Sbjct: 503 GKNGLQVFD 511


>gi|119468711|ref|ZP_01611763.1| putative GGDEF domain membrane protein [Alteromonadales bacterium
           TW-7]
 gi|119447767|gb|EAW29033.1| putative GGDEF domain membrane protein [Alteromonadales bacterium
           TW-7]
          Length = 344

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 118/233 (50%), Gaps = 15/233 (6%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS---LVIISITISLLLGYISGSILK 91
           F++ +   + +   +  +   T  +    IL+   S   +V +++ I+LLL Y+S   + 
Sbjct: 100 FALPVLCYLLMGKRYGIFFSGTVLFIQSLILLSKSSPDPIVNLNMAINLLLAYVSIWTVS 159

Query: 92  ELF-----ISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNEKLSIVFFDIDYFKQI 142
            +F     +S  R+  L+ +D L+G  N       F   L        +   D+DYFKQI
Sbjct: 160 HIFEGSRALSSKRLKNLALLDPLTGAGNRLSMNHYFEVELVDKTNTY-LFLLDLDYFKQI 218

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH VGDKV+  ++  L +      +V R+GGEEFA     +S+ EA   A  LR+ 
Sbjct: 219 NDKFGHDVGDKVLTEIATLLRITLAKG-YVFRVGGEEFAVIHSFNSKDEALFAAEKLRET 277

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +E +  NI  G +I +TIS G+A+      + +I   AD  LY AK+ GRN+V
Sbjct: 278 VEKTPFNI-EGHAIKLTISIGVADYQANPSLESIFIAADIQLYKAKRLGRNKV 329


>gi|39934727|ref|NP_947003.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009]
 gi|192290248|ref|YP_001990853.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
 gi|39648577|emb|CAE27098.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris
           CGA009]
 gi|192283997|gb|ACF00378.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1]
          Length = 404

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 96/233 (41%), Gaps = 12/233 (5%)

Query: 36  SIFIATVIFIANIFLFYIGLTPFYG-LEYILVENLSLVIISITISLLLGYISGSILKELF 94
           +  IA +I    +      +    G L  +   +    ++   + L + +    +L  + 
Sbjct: 152 AAVIACLIMAVYLVRSVAAIMGVGGELSLVHFNDFQSALVLALVFLSMTWNFAFLLMAID 211

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147
              + +  L+ +D L+G+ N    +  +           E  +++  D+D FK IND  G
Sbjct: 212 RLRSEVENLALLDDLTGISNRRHLLQRMSEQCTLSMSTGEPFAVLAIDLDGFKAINDGHG 271

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207
           H  GD+ +   S            + R GG+EF     G++ +E A++A  +    E+  
Sbjct: 272 HAAGDECLRRFSRAAQSRLRPGDLLARAGGDEFCVVMPGTTLREGAMIARYILD--ESRA 329

Query: 208 INISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCF 258
           ++      I I  S GIA+      +    +I  AD ALY AKK G++R   +
Sbjct: 330 VSERGEAGIKIAASIGIAQWTPQIGQHPERLIAAADVALYNAKKLGKDRYAVY 382


>gi|326794922|ref|YP_004312742.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
 gi|326545686|gb|ADZ90906.1| diguanylate cyclase [Marinomonas mediterranea MMB-1]
          Length = 384

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 69/200 (34%), Positives = 102/200 (51%), Gaps = 19/200 (9%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121
           +SL++++I + L+L  +S   +       NR    +  D LSGLLN           +++
Sbjct: 195 VSLMLLAINV-LVLLLVSRKFI-------NRFHFCAIKDELSGLLNRRYLNEISAKVMAN 246

Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             + N  +S++FFDID FK IND +GH  GD V++ L   +           R GGEEF 
Sbjct: 247 AQTNNRSISLLFFDIDLFKSINDKYGHHAGDLVLSQLGSIVKEFTRMNDLSFRYGGEEFV 306

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYR 239
               G    EA   ANDLR+ IE S  ++     I +T+S G+A     E   I  +I+R
Sbjct: 307 LIYEG-DVHEAERFANDLRQYIEKSAFDLGIAQ-IQLTVSIGVATNQSHETHSIKDLIFR 364

Query: 240 ADQALYVAKKSGRNRVVCFS 259
           AD A+Y AK +GRN +  +S
Sbjct: 365 ADAAMYQAKAAGRNCIRVYS 384


>gi|322434099|ref|YP_004216311.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidobacterium sp. MP5ACTX9]
 gi|321161826|gb|ADW67531.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidobacterium sp. MP5ACTX9]
          Length = 583

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 11/188 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFF 134
           L  +    + E      R   ++  D L+GL N  +                 +++I+  
Sbjct: 131 LCLVVAMDITENKKEQARWQTIAMQDSLTGLANRISLEERARQALITARRNGHRVAILCI 190

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAA 193
           D+D FKQIND +GH +GD+ +  L  +L         V R+GGEEF        S Q A 
Sbjct: 191 DLDRFKQINDWYGHSIGDECLKELGSRLTRRLRGMDVVARVGGEEFTVVLAEVESAQSAM 250

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252
           I+AN L + I   ++      ++ +  S G+A    H      +   AD A+Y AK++G 
Sbjct: 251 IVANFLLQAI--GKVFEVENHTLTMGASIGVAVYPDHGTESDELQRLADLAMYRAKRAGG 308

Query: 253 NRVVCFSD 260
           NR     +
Sbjct: 309 NRAFIAQE 316


>gi|262275036|ref|ZP_06052847.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Grimontia hollisae CIP 101886]
 gi|262221599|gb|EEY72913.1| extracellular solute-binding protein family 3/GGDEF domain protein
           [Grimontia hollisae CIP 101886]
          Length = 463

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 17/209 (8%)

Query: 62  EYILVENLSLV-IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
            +      SLV +++++  +LL        + L     ++   +  D L+GL+N      
Sbjct: 242 HWFWPITASLVFLVAVSYIILLKKAVTRKTRALKALNVKLEDYAYTDSLTGLMNRRGLDR 301

Query: 121 SLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
                         KL ++  D+D+FKQIND +GH  GD+V+  L   L       + V 
Sbjct: 302 MYSSKRVSNMRKRGKLGVLMLDVDHFKQINDKYGHLKGDEVLNNLGGVLTDYVREAVAVA 361

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKII--ENSQINISSGPSIHITISAG---IAERC 228
           RLGGEEF         ++  + A+ +   +  + SQ  +     +H+T S G   +    
Sbjct: 362 RLGGEEFCLLLPAEDVRDLEVNADYVCSCLVPQASQTQL----DLHVTASIGALLVDRES 417

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVC 257
            +  +  +++ AD+ +Y AK++GRNRVV 
Sbjct: 418 PETSLEALLHHADRLMYQAKEAGRNRVVV 446


>gi|255021780|ref|ZP_05293811.1| hypothetical protein ACA_1622 [Acidithiobacillus caldus ATCC 51756]
 gi|254968780|gb|EET26311.1| hypothetical protein ACA_1622 [Acidithiobacillus caldus ATCC 51756]
          Length = 883

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 15/181 (8%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+   +  D L+GL N + F+  L         +   L +   D+D FKQ+ND  GH  G
Sbjct: 322 RLRNQALRDQLTGLPNRALFLDRLEIARNQTLRHERLLGVALLDLDGFKQVNDRLGHDAG 381

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINI 210
           D+++  +  +L         + R+GG+EF     G    ++  I+   L   +   +   
Sbjct: 382 DQLLQTVVQRLQAQLRAGDTLARMGGDEFGLLLPGLERLKDLEIVCERLLATLR--EPLE 439

Query: 211 SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF----SDIENNT 265
             G ++H++ S G+         IST+I  AD ALY AK +GR++         +   N 
Sbjct: 440 VHGEAVHVSGSLGVTLYPLDDSDISTLIRHADLALYAAKDAGRDQCKLHTLAMDEAMQND 499

Query: 266 C 266
            
Sbjct: 500 A 500


>gi|241765989|ref|ZP_04763912.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
 gi|241364038|gb|EER59282.1| diguanylate cyclase [Acidovorax delafieldii 2AN]
          Length = 566

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 12/189 (6%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYN 126
           ++ ++S +   I+  I  EL  S + ++ L+  D L+GL N   F   L           
Sbjct: 379 LARSLSDMEQQITRQI-AELNASRDSMAHLAHHDLLTGLPNRRMFEQRLEQALELSRRSG 437

Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186
              ++ F D+D FK IND+ GH  GD V+   +  +V        V RL G+EF      
Sbjct: 438 RACALFFVDLDDFKSINDDLGHAAGDAVLQATARAIVAAVRQADTVARLAGDEFTVLCEN 497

Query: 187 SSEQEAAI-LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQAL 244
              +EAA+ +A  L++     Q     G S+ +  S G++          +++  AD A+
Sbjct: 498 VDTEEAALHIAEKLQQAFA--QPLQLGGKSLEVHASIGLSLFPRDAHDAQSLLASADAAM 555

Query: 245 YVAKKSGRN 253
           Y  K+S RN
Sbjct: 556 YRVKQSRRN 564


>gi|66047720|ref|YP_237561.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63258427|gb|AAY39523.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 972

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 85/184 (46%), Gaps = 12/184 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           E + +  +++ L+  D L+ L N           IS   S  + +S++F D+D FK +ND
Sbjct: 521 ERYDAKKKLTYLAENDSLTHLPNRWFLSNYLREIISRKTSAPDAVSVIFIDLDRFKAVND 580

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS--SEQEAAILANDLRKI 202
             GH VGD+++     +L    G    V RLGG+EF+     S  SE     LA  + + 
Sbjct: 581 TMGHSVGDQLLIQAGRRLKDCIGENSVVARLGGDEFSIVVTHSVYSESLIKSLATHVVEA 640

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +   +     G  I ++ S GIA           I+  AD A+Y AKKSGRN    ++  
Sbjct: 641 L--GKPFNLGGQDIFVSASVGIANYPFDGRDTGVILKNADTAMYQAKKSGRNNFKFYNAR 698

Query: 262 ENNT 265
            N +
Sbjct: 699 MNES 702


>gi|53718716|ref|YP_107702.1| hypothetical protein BPSL1080 [Burkholderia pseudomallei K96243]
 gi|53726249|ref|YP_103785.1| EAL/GGDEF domain-containing protein [Burkholderia mallei ATCC
           23344]
 gi|76811415|ref|YP_332721.1| hypothetical protein BURPS1710b_1311 [Burkholderia pseudomallei
           1710b]
 gi|121600737|ref|YP_992052.1| EAL/GGDEF domain-containing protein [Burkholderia mallei SAVP1]
 gi|124383400|ref|YP_001028498.1| EAL/GGDEF domain-containing protein [Burkholderia mallei NCTC
           10229]
 gi|126449510|ref|YP_001081605.1| EAL/GGDEF domain-containing protein [Burkholderia mallei NCTC
           10247]
 gi|254175486|ref|ZP_04882146.1| EAL/GGDEF domain protein [Burkholderia mallei ATCC 10399]
 gi|254207822|ref|ZP_04914172.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei JHU]
 gi|254260582|ref|ZP_04951636.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1710a]
 gi|254356297|ref|ZP_04972573.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei 2002721280]
 gi|52209130|emb|CAH35074.1| putative membrane protein [Burkholderia pseudomallei K96243]
 gi|52429672|gb|AAU50265.1| EAL/GGDEF domain protein [Burkholderia mallei ATCC 23344]
 gi|76580868|gb|ABA50343.1| putative membrane protein [Burkholderia pseudomallei 1710b]
 gi|121229547|gb|ABM52065.1| EAL/GGDEF domain protein [Burkholderia mallei SAVP1]
 gi|124291420|gb|ABN00689.1| diguanylate cyclase (GGDEF)/EAL domain protein [Burkholderia mallei
           NCTC 10229]
 gi|126242380|gb|ABO05473.1| diguanylate cyclase (GGDEF)/EAL domain protein [Burkholderia mallei
           NCTC 10247]
 gi|147751716|gb|EDK58783.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei JHU]
 gi|148025294|gb|EDK83448.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei 2002721280]
 gi|160696530|gb|EDP86500.1| EAL/GGDEF domain protein [Burkholderia mallei ATCC 10399]
 gi|254219271|gb|EET08655.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1710a]
          Length = 786

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVII-SITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +Y    N+ L++   IT+++L  + ++  ++ +L      ++QL+  D L+GL N  A +
Sbjct: 292 DYHHTRNVYLLMTGFITLAMLAFFGVATGLIGKLLGREREMTQLAEFDLLTGLANRYATL 351

Query: 120 SSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            SL       S   +L+I+F D+D FK +ND  GH  GD V+   + +L         + 
Sbjct: 352 RSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVANEGALA 411

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EF     G + E+ A  LA  + ++    +     G S  +  S GIA      E
Sbjct: 412 RIGGDEFVVVVKGENVERRAERLAEAIVRMFA--EPFDVRGSSFVLHASIGIALHSVENE 469

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +AD A+Y AK +G+N    ++
Sbjct: 470 SEIDLLKKADLAMYSAKDAGKNCYQFYA 497


>gi|163939565|ref|YP_001644449.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus weihenstephanensis KBAB4]
 gi|163861762|gb|ABY42821.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus weihenstephanensis KBAB4]
          Length = 911

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 93/200 (46%), Gaps = 10/200 (5%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           +++V I I       Y+    +  +    + I+ L+  D ++ + N   F   L    E+
Sbjct: 447 VTIVPIMIEGQTFGSYVMVKDITRMKKQQDEINYLAFHDTVTEIGNRIFFQKELEKSIER 506

Query: 129 -------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                    +++ D++ FK IND  GH +GD V+  ++ +        + + R+GG+EFA
Sbjct: 507 ARKTQGEFGLLYIDLNRFKTINDTRGHSIGDSVLKEVAKRFRTCLSPAIPLARIGGDEFA 566

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRA 240
                 +EQ+   L   L +I E  +  + +  S ++++S GIA         +T++  A
Sbjct: 567 IIVHNHTEQQLLDLCETLFRITE--EPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHA 624

Query: 241 DQALYVAKKSGRNRVVCFSD 260
           D A+Y AK+ G N V  + +
Sbjct: 625 DIAMYSAKEKGNNAVCMYDE 644


>gi|119774102|ref|YP_926842.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B]
 gi|119766602|gb|ABL99172.1| diguanylate cyclase/phosphodiesterase [Shewanella amazonensis SB2B]
          Length = 680

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 14/197 (7%)

Query: 82  LGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSI 131
           LG +S     IL +   + +++ +++  D L+GL N +  +            +    ++
Sbjct: 224 LGLVSTKLNQILLQFGQTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRARVHKRSFTL 283

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +F D+D FK +ND+ GH +GD+ +A ++  L  V G    V RLGG+EF   A      +
Sbjct: 284 LFIDLDRFKNVNDSLGHALGDQFLARIARLLERVVGDKGTVARLGGDEFVILADEIHCAD 343

Query: 192 -AAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249
            AA   + L  +++ +        SIH   S GI+           +I  AD A+Y AK 
Sbjct: 344 MAADFVDKL--LVQLNNPIQLGDHSIHPAASVGISLYPEDGNSAEDLIRHADIAMYSAKA 401

Query: 250 SGRNRVVCFSDIENNTC 266
           SG N+   F        
Sbjct: 402 SGSNQWAFFKQQMTERA 418


>gi|260843270|ref|YP_003221048.1| putative diguanylate cyclase [Escherichia coli O103:H2 str. 12009]
 gi|300819391|ref|ZP_07099588.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
 gi|300925278|ref|ZP_07141172.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|301327127|ref|ZP_07220400.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|257758417|dbj|BAI29914.1| predicted diguanylate cyclase [Escherichia coli O103:H2 str. 12009]
 gi|300418584|gb|EFK01895.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|300527987|gb|EFK49049.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
 gi|300846249|gb|EFK74009.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|323163795|gb|EFZ49610.1| diguanylate cyclase domain protein [Escherichia coli E128010]
 gi|324019148|gb|EGB88367.1| diguanylate cyclase domain protein [Escherichia coli MS 117-3]
          Length = 452

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 22/258 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LV 66
            + +WL        F+   + I+  +    F A +  I+ +F+    ++ +Y    I +V
Sbjct: 199 MIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVV 258

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             L++++I +            I   L ++ N    ++  D L+ + N + F + L    
Sbjct: 259 SKLTVMVIFMC----------HIFSALRVTKN----IAHRDPLTNIFNRNYFFNELTVQS 304

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +      ++  DID+FK++ND +GHPVGD+VI  + + +         + R+GGEEF 
Sbjct: 305 ASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFG 364

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYR 239
                   + A  LA  +R+ +E    +         +TIS G +  + +    + I   
Sbjct: 365 VLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRL 424

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK++GRN+VV 
Sbjct: 425 ADNALYEAKETGRNKVVV 442


>gi|127511728|ref|YP_001092925.1| diguanylate cyclase [Shewanella loihica PV-4]
 gi|126637023|gb|ABO22666.1| diguanylate cyclase [Shewanella loihica PV-4]
          Length = 394

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 11/196 (5%)

Query: 71  LVIISITISLLLGYISGSILKELFISY--NRISQLSRIDCLSGLLNHSAFISSL------ 122
           LVII     +LL +   +IL++        +  +++ ID L+ L N   F   L      
Sbjct: 179 LVIIITGQKVLLQWFRKAILRDAEKQQLLQQFKRMALIDGLTDLSNRRHFDEVLALEIKA 238

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEF 180
                + LS++  D+D+FK++ND+ GH  GD+ +  L + L  V         R GGEEF
Sbjct: 239 AERTGDPLSMILLDVDFFKRLNDSLGHSDGDRCLVRLGEVLHGVASRPRDLAARYGGEEF 298

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYR 239
           A     +    A  +A  +R  ++ ++I         ++T+S G+           ++  
Sbjct: 299 AIILPDTDLSGARHIAEQIRYELKAAEIPHPDSTLGAYVTVSQGVCLWQPGLDADELLAS 358

Query: 240 ADQALYVAKKSGRNRV 255
           ADQ LY +K  GR+R 
Sbjct: 359 ADQLLYQSKAQGRDRC 374


>gi|315185415|gb|EFU19187.1| diguanylate cyclase [Spirochaeta thermophila DSM 6578]
          Length = 385

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 106/227 (46%), Gaps = 23/227 (10%)

Query: 46  ANIFLFYIGLTPFYGL----EYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101
           A I +  IG+   YGL    + +L E+ +   ++  I  L+G++S S+        N I 
Sbjct: 147 AEILVPVIGMGGVYGLIVFGKKVLGEDYTPQELAY-IGRLVGFVSISL-------QNNIH 198

Query: 102 QLSRI-DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153
             S I D  +G+ N S F+  L         Y   L ++  D+D+FK  ND +GH  GD+
Sbjct: 199 YRSSIMDFKTGIYNASFFMRRLEEELYRVKRYGGHLGLIILDVDHFKLFNDRYGHLAGDE 258

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           V+  ++  +           R GGEEF     G++   A I+A  +R  IE  ++     
Sbjct: 259 VLISIARDIKQNLRKGDVAARYGGEEFVVLLPGANRNAAYIVAERVRHSIELMKVYFEDK 318

Query: 214 PSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCF 258
             +H+T+S G+             +I  ADQALY++K+ GRNR   +
Sbjct: 319 I-LHVTVSVGVTSCTRYRLLDPRKLIEEADQALYLSKERGRNRTTVY 364


>gi|156973249|ref|YP_001444156.1| hypothetical protein VIBHAR_00930 [Vibrio harveyi ATCC BAA-1116]
 gi|156524843|gb|ABU69929.1| hypothetical protein VIBHAR_00930 [Vibrio harveyi ATCC BAA-1116]
          Length = 581

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 18/192 (9%)

Query: 84  YISGSILKELFISYNRISQ-------LSRIDCLSGLLNHSAFISSLG-------SYNEKL 129
            I    + E +++  ++ +       LS  D L+ + N   F   L             L
Sbjct: 385 LIMARDISERYLAEQKLEEANLELEKLSFSDSLTQVANRRRFDEQLHTLWYHHIREKLPL 444

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSS 188
           +I+  DID+FK  ND +GH  GD+ +  ++     V   +   V R GGEEFA     ++
Sbjct: 445 TIMLCDIDFFKDYNDCYGHQQGDEALVKVAAVFQQVASRSSDCVARYGGEEFAFILPNTT 504

Query: 189 EQEAAILANDLRKIIENSQINI-SSGPSIHITISAG-IAERCHKEPISTI-IYRADQALY 245
            + A  +A  + + I    +   SS  S  +T+S G +A   H      + +  AD ALY
Sbjct: 505 TEGALKVAQRIHEQIHELAVEHRSSNTSDRLTVSIGFVAYVPHHGDEPEMGVAMADSALY 564

Query: 246 VAKKSGRNRVVC 257
            AK  GR+    
Sbjct: 565 QAKADGRDCTSV 576


>gi|27377505|ref|NP_769034.1| hypothetical protein bll2394 [Bradyrhizobium japonicum USDA 110]
 gi|27350649|dbj|BAC47659.1| bll2394 [Bradyrhizobium japonicum USDA 110]
          Length = 653

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 104/241 (43%), Gaps = 14/241 (5%)

Query: 34  FFSIFIATVIFIANIFL-FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE 92
           F +I IA + F A +FL   I L     + Y+L+    LV +  T+ L   +++      
Sbjct: 155 FATIPIAAIAFTAPLFLGIAICLGRSNDVAYLLIAI--LVAVYGTVLLRAVFVNSFSFAR 212

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145
             I      +  R D L+ L N  AF  +L +         E+ +++  D+D FK++ND 
Sbjct: 213 RVIRQVEAERTVRQDPLTHLPNRFAFNETLDAALKRLALSGEEFAVLLLDLDRFKEVNDK 272

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIE 204
           FGHP GD+ +  ++ +L         V R+GG+EFA      +  ++A  +A        
Sbjct: 273 FGHPAGDEFLVQVASRLQRCTRAAEHVARIGGDEFALVMANLARPEDALEIAERFVASFA 332

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                I     +  T S GI            ++  AD ALY AKK+G   V  F D ++
Sbjct: 333 E-PFPIEGRQIVGAT-SVGIVLAPRDGNTALDVMKNADAALYRAKKAGPGTVCFFEDSDD 390

Query: 264 N 264
            
Sbjct: 391 R 391


>gi|330823162|ref|YP_004386465.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Alicycliphilus denitrificans K601]
 gi|329308534|gb|AEB82949.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alicycliphilus denitrificans K601]
          Length = 698

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 84/195 (43%), Gaps = 18/195 (9%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDID 137
           +    +     +  R   L+  D L+ L N    +  L           ++ +++F D+D
Sbjct: 249 VVVRDITARKQAQERARFLALHDPLTQLPNRRHLMLQLARTVATAQERRKRSAVLFVDLD 308

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-----SSEQEA 192
           +FK +N++ GH  GD+++  ++ +L        FV  +GG++F     G     ++   A
Sbjct: 309 HFKTVNESLGHEAGDQLLCEVARRLQEGVKATDFVAHVGGDQFVVLLSGLRGRAAAAAAA 368

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             L   +R +    +  +S  PS+ I++               ++ RAD A+  AK+SGR
Sbjct: 369 DALIERIRAVYTIGETQLSPSPSVGISV-----FPDDGYGPDELLRRADAAMQQAKESGR 423

Query: 253 NRVVCFS-DIENNTC 266
              + ++ D+E    
Sbjct: 424 GTRLFYTPDMEGQPA 438


>gi|315180228|gb|ADT87142.1| GGDEF family protein [Vibrio furnissii NCTC 11218]
          Length = 505

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 17/216 (7%)

Query: 59  YGLEYILVENLSLVIISI-----TISLLLGYISGSILKE-------LFISYNRISQLSRI 106
           + L   L +N   V+I +      ISLLLG++S  +++E       L      +  +   
Sbjct: 292 FRLSVPLTQNDQWVLIGLGAGGTIISLLLGFVSYLLMREKETLNLKLEERTKELRFMVEH 351

Query: 107 DCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           D L+G+ N  AF   L      ++  ++V FDID FK IND + H  GD+++  ++  + 
Sbjct: 352 DSLTGIFNRRAFNRILDVYMRDDKVFTLVSFDIDNFKSINDRYSHLAGDQILVAVTKTIE 411

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
            V        R GG+EF+     +  +        +R  +E SQ + +    I +++S G
Sbjct: 412 KVLEGNDIFVRTGGDEFSILCHVTEREPLMRYLEKIRCTVEQSQFD-TGYQLISVSLSIG 470

Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            A   H      ++ RAD  LY +K  GRN+V    
Sbjct: 471 AAVN-HGYSEQELLQRADTMLYESKAKGRNQVSIAD 505


>gi|300907296|ref|ZP_07124947.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|301306137|ref|ZP_07212214.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|300400932|gb|EFJ84470.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|300838637|gb|EFK66397.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|315253470|gb|EFU33438.1| diguanylate cyclase domain protein [Escherichia coli MS 85-1]
          Length = 460

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 89/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I+        LS++  D+D FK
Sbjct: 281 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND +GH  GD+++  +S        +  +V R GG+EF      +SE E    A  +R
Sbjct: 339 EINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +E +++  ++G  I +++S G A          +I  AD+ALY+ K+ GRNRV  +
Sbjct: 399 SRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYITKRRGRNRVELW 456


>gi|262164480|ref|ZP_06032218.1| sensory box/GGDEF family protein [Vibrio mimicus VM223]
 gi|262026860|gb|EEY45527.1| sensory box/GGDEF family protein [Vibrio mimicus VM223]
          Length = 308

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 12/196 (6%)

Query: 73  IISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
           I+  T   ++G I   + + ++     ++ QL+  D L+ L N            +    
Sbjct: 112 ILQKTTGEVIGLIGVSTDITDIVELREQLYQLANTDALTQLCNRRKLWADFRSAFARAKH 171

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
             + LS +  DID FK IND+FGH  GD+V+ FL+     +       GR+GGEEF    
Sbjct: 172 SKQPLSCISIDIDNFKLINDHFGHDKGDEVLCFLAQLFYELTSEHHICGRVGGEEFIIVL 231

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQA 243
             +    A  LA  +R+               H+ + AG+A  R      + I  R+DQA
Sbjct: 232 EDTPVATAFALAEQIRQRFSQHSFFEQKE---HVYLCAGVATMRLSDHDFTDIYRRSDQA 288

Query: 244 LYVAKKSGRNRVVCFS 259
           LY AK+SGRNR   ++
Sbjct: 289 LYQAKRSGRNRCCIYN 304


>gi|218133210|ref|ZP_03462014.1| hypothetical protein BACPEC_01072 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992083|gb|EEC58087.1| hypothetical protein BACPEC_01072 [Bacteroides pectinophilus ATCC
           43243]
          Length = 718

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 21/198 (10%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDY 138
           +   + +   +  +I   +  D L+GL N           I +        +++F D+D 
Sbjct: 271 TAVDITQKKKNQQKIEYQAHNDFLTGLYNRMKCESDLRKVIKNAVKDGTTGAVMFIDLDN 330

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK IND  GH  GD ++  ++  +  + G      R+GG+EF          +   L   
Sbjct: 331 FKHINDGLGHQYGDVLLQQVAAGIQGIAGLRGHCYRMGGDEFVIIIEPQLYDQLDRLVRI 390

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +  +   S      G   + T+S GIA    H   ++ +I +AD A+Y AKK G+NR   
Sbjct: 391 ISDMFNRS--WYLMGTEYYCTMSMGIARFPEHGSDVNELIKKADIAMYEAKKGGKNRYAY 448

Query: 258 FS-----------DIENN 264
           +S           DIENN
Sbjct: 449 YSAGNDSGSIKQLDIENN 466


>gi|153939137|ref|YP_001390561.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum F str. Langeland]
 gi|152935033|gb|ABS40531.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum F str. Langeland]
 gi|295318642|gb|ADF99019.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum F str. 230613]
          Length = 419

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 89/182 (48%), Gaps = 11/182 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
             + E  I  ++  Q++  D L+ L N ++F+  L             L+I+F D+D FK
Sbjct: 240 RDITERKIYNDKTKQMAYFDSLTELPNRNSFLKQLEHEIKLSKKKQSLLAIMFLDLDKFK 299

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
           ++NDNFGH  GDK++  ++ ++     +   + R GG+EF       + E++   LA D+
Sbjct: 300 EVNDNFGHCTGDKLLWQVAKRVKNTISSKDLIARFGGDEFTILIRNIAHEKQVEDLARDI 359

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             + +  +     G  ++I  S GI+           +I +AD+A+Y AKK G N+   +
Sbjct: 360 IGVFK--EPICIEGIYVNIKTSIGISFFPKDGHTSQELIKKADKAMYDAKKRGSNKFQIY 417

Query: 259 SD 260
            D
Sbjct: 418 KD 419


>gi|260221090|emb|CBA29307.1| hypothetical protein Csp_A11490 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 560

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 95/208 (45%), Gaps = 14/208 (6%)

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           ++S V++S+     + +++   + EL     ++  L+  D L+GL N   F+        
Sbjct: 354 DVSGVLLSVGDKTSMWFMT--DISELKAYQRKVENLAFHDSLTGLPNRLLFVDRARQAFA 411

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                    +I F D+D FK +ND +GH  GD V+  +SD+L         V RLGG+EF
Sbjct: 412 VAARSETFCAICFLDLDGFKPVNDVYGHAAGDLVLKEVSDRLQKSTRPNDTVCRLGGDEF 471

Query: 181 AAAALG-SSEQEAAILANDLRKIIE-NSQINISSGPSIHITISAGIAERCHKE-PISTII 237
                   S  +   +    R + E +  I I  G +I+++ SAG++        I  ++
Sbjct: 472 ILLLTQLESFDDYRPVLE--RALFELSKPIEIGIGLNINVSASAGVSRYPKDALEIDELM 529

Query: 238 YRADQALYVAKKSGRNRVVCFSDIENNT 265
             +D A+Y +K  G  R V  +D  ++ 
Sbjct: 530 KISDAAMYKSKTDGSRRFVVHNDERSDA 557


>gi|226941766|ref|YP_002796840.1| hypothetical protein LHK_02851 [Laribacter hongkongensis HLHK9]
 gi|226716693|gb|ACO75831.1| Predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Laribacter hongkongensis
           HLHK9]
          Length = 740

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 92/207 (44%), Gaps = 5/207 (2%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           +    SL +    +++ LG++    +  L      +   +  D ++GL N  A ++++ +
Sbjct: 279 VWRTGSLTLAFCLVAVALGWVIRRQMLALSRQAAHMQYDANHDSVTGLANRRALLAAIDA 338

Query: 125 Y----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                 E +++V  D+D+FK+IND++GH  GD+++     +L  V      V RLGG+EF
Sbjct: 339 QVRHEPEWMALVLIDLDFFKRINDSWGHEAGDELLRETGRRLQAVADASHQVYRLGGDEF 398

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYR 239
                G       +       +    +       ++ ++ SAGI+    H +    ++  
Sbjct: 399 VVLVRGGPLAGTELARQTQTLLARLGEPYELQHGTVMLSASAGISCFPEHADHAGDLLRL 458

Query: 240 ADQALYVAKKSGRNRVVCFSDIENNTC 266
           AD A+Y AK+ GRN  V F        
Sbjct: 459 ADAAMYHAKRQGRNGHVFFDRSMAQEA 485


>gi|114049224|ref|YP_739774.1| diguanylate cyclase [Shewanella sp. MR-7]
 gi|113890666|gb|ABI44717.1| diguanylate cyclase [Shewanella sp. MR-7]
          Length = 391

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 102/237 (43%), Gaps = 13/237 (5%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS-LVIISITISLLLGYIS- 86
           +  ++   +    +IF    F+        +    I  E  + ++   +  +L++  +  
Sbjct: 152 VATAMVLPLVAMVIIFTFRFFIALFSSNEDHTFIAIYREEATPMLWFYVVFTLVINIVMI 211

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139
           G+ +  L    ++I  L+  D L+GL N  A    L          NE  S++  DID+F
Sbjct: 212 GNAMTRLV---SKIKILAERDQLTGLWNRHAMQKRLATIHQLWQKNNEPYSVILLDIDHF 268

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           KQIND +GH +GD  +   +     V      + R GGEEF      ++ + A  +A+ L
Sbjct: 269 KQINDQYGHAIGDLALLTAARLFSTVLREHDVLCRHGGEEFLVLLPATNARAARTVADKL 328

Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +++  + +    G  I +  S G A          ++  AD A+Y AK  GR+R+ 
Sbjct: 329 HRVLRENPLQC-QGQEIQLYASIGYATIYRGCESDKLLIEADHAMYQAKSEGRDRIC 384


>gi|313623149|gb|EFR93412.1| ggdef domain-containing protein [Listeria innocua FSL J1-023]
          Length = 219

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 99/205 (48%), Gaps = 11/205 (5%)

Query: 66  VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--- 122
           VE +   ++    +LL+ Y    I K   +  N +++ +  D L+ L N   F       
Sbjct: 15  VEIIEYFLLFFVTALLVFYACNYIDKSNLVIQN-LTETAMTDSLTNLPNMRFFTQQFAWI 73

Query: 123 ----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGG 177
                   + LS+   DID+FK+IND  GH  G+ V+A  S  L    F       R+GG
Sbjct: 74  FNKSQKRKKALSLFIIDIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGG 133

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTI 236
           EEFA        ++AA++A+ LR  IE ++    +  S ++T+S G+A   +      ++
Sbjct: 134 EEFAVLLQNVGTEQAALIADFLRDEIERAKFPY-NPVSGNVTVSIGVASMGYNYRTTESL 192

Query: 237 IYRADQALYVAKKSGRNRVVCFSDI 261
              ADQALY AK++GRN++    + 
Sbjct: 193 FEAADQALYQAKQNGRNQIAIHQEE 217


>gi|299065300|emb|CBJ36468.1| putative diguanylate cyclase (GGDEF domain) [Ralstonia solanacearum
           CMR15]
          Length = 437

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 28/216 (12%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118
           + L + +    S+    + + +L+  ++ ++ + LF ++  + QLS  D L+G+ N S F
Sbjct: 221 FTLGWYVARIFSMFAPGVLVCVLVWEVT-TLYRRLFEAHVSLQQLSMHDALTGIYNRSYF 279

Query: 119 ISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPM 170
              L              S+V  D+D+FK+ ND FGH  GD  +A ++  L  V      
Sbjct: 280 NDQLPRVFDEARRRGRPFSLVMIDVDHFKRYNDTFGHLKGDGCLAAIASALEGVMPRHTG 339

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
           F+ R GGEEFA     +S ++A +LA   R+ + + ++   + PS ++TISAG A     
Sbjct: 340 FIARYGGEEFALVLPDASPRDALLLAESAREAVLHLRLEAPA-PSRYVTISAGCATAAPG 398

Query: 231 EPIS----------TIIYRADQALYVAKKSGRNRVV 256
              S          T+        Y AK +GRN VV
Sbjct: 399 SAASLDALVAAADATL--------YRAKAAGRNLVV 426


>gi|260221000|emb|CBA29127.1| hypothetical protein Csp_A10590 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 641

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 11/178 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIV-------FFDIDYFKQI 142
           + +L ++ +++ +LS  D L+ + N + F  SL + +++ S +         DID+FK I
Sbjct: 450 MDQLRLANDQLQRLSMTDSLTQVGNRAFFDQSLVTEHKRASRLKQPLALLLLDIDHFKAI 509

Query: 143 NDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           ND +GHP GD  +  L+D +   V      + R GGEEFA   + S+  +A  LA++ R 
Sbjct: 510 NDTYGHPAGDACLRTLADYMRQKVQRAGDLLARYGGEEFAVLLINSTLGDALDLADEFRA 569

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257
            I   ++ +  G ++  T S G+A          S  +  AD+ALY AK  GRN V  
Sbjct: 570 DIAGLEV-VFEGRTLRFTASIGVASAIPDMQFTPSQFVGDADKALYEAKHGGRNCVRA 626


>gi|258512070|ref|YP_003185504.1| diguanylate cyclase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478796|gb|ACV59115.1| diguanylate cyclase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 720

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 55/181 (30%), Positives = 85/181 (46%), Gaps = 10/181 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           S+L E    Y  +   S  D  +GLLN+  F   L          N  +S++  D+D+FK
Sbjct: 372 SVLLENAKLYQELQDRSFRDEATGLLNYRYFYEELSRRVQVSLRENRPVSVLIVDVDFFK 431

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           + ND +GH  GD V+  +   L           R GGEEFA     +S +EA  +A  +R
Sbjct: 432 RFNDTYGHLAGDVVLREVGRILERHAAPDGVAARYGGEEFAVLLW-ASAREAYEIAEAIR 490

Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYV-AKKSGRNRVVCF 258
           + +    ++        IT+S G+A    H E    ++ +AD A+Y  AK+ GRNR   +
Sbjct: 491 QDVSKLAVDFEGYHLQGITVSIGMATCPDHSESDRDLLVKADSAMYWGAKQRGRNRTAMY 550

Query: 259 S 259
           +
Sbjct: 551 A 551



 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 5/137 (3%)

Query: 107 DCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           D L+ L  H      +       +    ++  D+  F ++N  +G   GD+V+      +
Sbjct: 561 DPLTSLYTHHFVNIRVRDEMAHGTTCWGVICLDLVRFSEVNAAYGFEAGDEVLRQAGVVI 620

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             V        R GG+E        SE E A +   + + IE    ++    ++ + ++ 
Sbjct: 621 RQVLRHSELACRYGGDEMLIIIPNVSELELAGICRRVTRAIEQHPFHVGEN-TLSVRVAC 679

Query: 223 GIAERCHKEPISTIIYR 239
           G+      +  + +  R
Sbjct: 680 GMEVYDVVQDGADLFNR 696


>gi|167897696|ref|ZP_02485098.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 7894]
          Length = 688

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 63/215 (29%), Positives = 99/215 (46%), Gaps = 15/215 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRIS----QLSRIDCLSGLLNHSAFIS 120
           L   ++L  ++I I  L+          L  S +R+S    +++  D L+ L N      
Sbjct: 214 LAATVALFTVAILIVALILSHFDVRTTLLAGSVSRLSGQIVRMTAFDTLTDLPNRRTLNE 273

Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            LG           KL+I+F D+D FK IN + GHP GD+V+   S +L+        V 
Sbjct: 274 HLGRALAAARARGGKLAILFMDLDGFKTINGSLGHPAGDEVLKTFSQRLLRCVRDGDIVA 333

Query: 174 RLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           RLGG+EF       SS+ EAA +A ++ + +   + N   G ++ +T S GIA      +
Sbjct: 334 RLGGDEFVVLLESVSSDDEAARVARNVLERMRKGRWN--DGQALQVTPSIGIALYPKDGD 391

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              T++  AD A+Y AK+ GR     F    +   
Sbjct: 392 TADTLLRHADAAMYAAKRGGRCTYRFFEATMDEAA 426


>gi|158521151|ref|YP_001529021.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3]
 gi|158509977|gb|ABW66944.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3]
          Length = 345

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 101/236 (42%), Gaps = 17/236 (7%)

Query: 31  FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI--LVENLSLVIISITISLLLGYISGS 88
           F + F  F+A V     +++F + L      E I  + E +  +I+ I + L + YIS  
Sbjct: 106 FQLRFRAFLALVAMAVTLYVFSMMLLYRNHPESIDVMTEIIRTMILFIAL-LWVSYISTY 164

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
           +    F    ++  L+  D L+ + N    +  L              ++   D+D FK 
Sbjct: 165 V----FRLRQKVKLLATRDPLTNVYNRREILEILKREKSFSDRAGSPFTLCILDLDDFKN 220

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLR 200
           +ND +GH  GD V+   +  + +   T  ++GR GGEEF    + S   +        L 
Sbjct: 221 VNDIYGHQAGDTVLKAFARTIRMNIRTEDYLGRYGGEEFFVIFVSSDCNDCNPACVERLL 280

Query: 201 KIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRV 255
                         ++ IT+S G+ A       I T+I   D+ALY AK +G++RV
Sbjct: 281 SATRQLSFPEID-RNLRITVSIGVTAYVQTGVSIDTLISMVDEALYRAKAAGKDRV 335


>gi|157963226|ref|YP_001503260.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
 gi|157848226|gb|ABV88725.1| diguanylate cyclase [Shewanella pealeana ATCC 700345]
          Length = 346

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 111/241 (46%), Gaps = 12/241 (4%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87
           ++  ++++ +       +  I LF   +    G     V    L++  I   LL+  +S 
Sbjct: 102 LVLPTVYYLLLGKKFANLPVIILFSAVVADIIGKYGFTVN--PLLVNFIFSYLLIWAVSH 159

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS---------SLGSYNEKLSIVFFDIDY 138
              K    S  ++ +L+  D L+   N  A            SL   +E+L ++  DID+
Sbjct: 160 IYEKNRANSEAKLQKLALQDPLTLSYNRLALTKYFENVGSKPSLQELDEELHLLILDIDF 219

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FKQ+ND +GH  GD V+   +  +  + G      R+GGEEF        + EA  LA  
Sbjct: 220 FKQVNDEYGHEAGDTVLQECAKIISRIAGDKQT-FRIGGEEFCVMIENKKQDEAIALAQL 278

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +R  +      ++   +I+IT+S G++       + +++ +ADQ LY AK +GRN+V+  
Sbjct: 279 IRTKLAQHTFRLAEQDNINITVSIGLSNYQPGMALPSLLRQADQRLYRAKHTGRNQVIYH 338

Query: 259 S 259
           +
Sbjct: 339 N 339


>gi|90417189|ref|ZP_01225116.1| PAS:GGDEF protein [marine gamma proteobacterium HTCC2207]
 gi|90330965|gb|EAS46226.1| PAS:GGDEF protein [marine gamma proteobacterium HTCC2207]
          Length = 873

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 16/195 (8%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
            S S +       + I +L+    L+ L N  A I ++         + + L+++  D+D
Sbjct: 434 FSFSDITTTKRDADAIHKLAFFAPLTHLPNRRALIDTVSQALNSSQRHIKSLALLSIDLD 493

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ------E 191
            FK IND  GH +GDK++   + +L     +   V R+GG+EF                E
Sbjct: 494 NFKNINDTLGHQLGDKILIETAQRLRRCVRSDDAVARIGGDEFVVVLENLDSNIESAKVE 553

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250
             ++   +  ++  S         IH   S G+A   + +  I  +  +AD ALY +K+S
Sbjct: 554 VEVVTTKILAVLNQS--YRVDEQDIHSGASIGVALTDNGQILIEELFKQADIALYQSKRS 611

Query: 251 GRNRVVCFSDIENNT 265
           GRN++  F      T
Sbjct: 612 GRNQMCFFDLAMEET 626


>gi|89092006|ref|ZP_01164961.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           withPAS/PAC sensor [Oceanospirillum sp. MED92]
 gi|89083741|gb|EAR62958.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           withPAS/PAC sensor [Oceanospirillum sp. MED92]
          Length = 1250

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 18/190 (9%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137
           I+    ++L + +N     +  D L+ L N       L           + L++V+ D+D
Sbjct: 678 ITTQKEQQLLLEFN-----AYHDKLTNLPNRVLLADRLSQAMHQQKRRGQTLAVVYIDLD 732

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILA 196
            FKQIND +GH VGD ++  +  +   +      + RLGG+EF A  L  +   ++  L 
Sbjct: 733 GFKQINDQYGHDVGDVLLVEIGQRFQTLLREGDTIARLGGDEFVAVMLDINSSMDSIPLL 792

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNR 254
             +   I    +       +  + S G+      E +    ++ +ADQA+Y AK  G+NR
Sbjct: 793 RRILHAISVPVLVDDVVLQV--SASLGVTFYPQAEDVDGDQLLRQADQAMYQAKLEGKNR 850

Query: 255 VVCFSDIENN 264
              F D+E++
Sbjct: 851 YYFF-DMEHD 859


>gi|308069705|ref|YP_003871310.1| GGDEF domain containing protein [Paenibacillus polymyxa E681]
 gi|305858984|gb|ADM70772.1| GGDEF domain containing protein [Paenibacillus polymyxa E681]
          Length = 661

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 13/167 (7%)

Query: 97  YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDK 153
           +  + +L+ +D L+GL         +  + EK    S++  DID FKQ+ND  GH  GD+
Sbjct: 496 HAEVRRLANMDMLTGLYVRHYVDQIIQQHQEKDFCGSLILVDIDQFKQVNDTHGHQTGDE 555

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213
           ++  +S+ +           R GGEE A        Q+A   A  +R  +++        
Sbjct: 556 ILKSVSNIVRSATRDEDVCARWGGEELAIYLPQLGVQQALGYAEKIRYRVQHETEP---- 611

Query: 214 PSIHITISAGIAER---CHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               +T+S GIAE      +  I ++ YRAD ALY AK  GRNR V 
Sbjct: 612 ---QVTVSCGIAEWNWLDDQISIESLFYRADMALYEAKNEGRNRTVV 655


>gi|264678990|ref|YP_003278897.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
 gi|262209503|gb|ACY33601.1| diguanylate cyclase [Comamonas testosteroni CNB-2]
          Length = 286

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 59/218 (27%), Positives = 95/218 (43%), Gaps = 13/218 (5%)

Query: 45  IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104
           I  +FL +  L       Y LV  L  ++ S+  S L+  +S      +  +   +    
Sbjct: 67  IMVLFLGFTELQDMLSSIYWLVTMLGSLLFSLVFSGLMLIVS------MRDAMATLRDER 120

Query: 105 RIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
             D L+ +LN   F             + LSIV  D+D+FK++NDN+GH  GD V+  ++
Sbjct: 121 NHDMLTRVLNRRGFWELADPLARDRKAQPLSIVVADLDHFKRVNDNWGHEYGDGVLKAVA 180

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
           + +         V R GGEEF      +  + A  +A  +R         +  G    +T
Sbjct: 181 EVIQASVRGTDLVARFGGEEFVLLLTHADIETAQRVAQRIRAGAVEIIAPLPDGQ--RVT 238

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +S G+        +   + RADQ LY AK+ GR++VV 
Sbjct: 239 LSMGVVVSPFGSDLREALMRADQQLYKAKELGRDQVVV 276


>gi|302879972|ref|YP_003848536.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Gallionella capsiferriformans
           ES-2]
 gi|302582761|gb|ADL56772.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Gallionella capsiferriformans
           ES-2]
          Length = 714

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 89/183 (48%), Gaps = 12/183 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144
           EL  +  +I++L+  D L+GL N    +  L             ++++  D+D FK IN+
Sbjct: 272 ELRQAAKKINELAFFDQLTGLPNRVLLLDRLKQAMSASTQNRCHIALLLIDLDKFKTINE 331

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKI 202
             GH +GD+++  ++++L     +   V RLGG+EF    A L + E  AA  A ++ + 
Sbjct: 332 TLGHDMGDQLLKQVAERLSHCVRSGDTVARLGGDEFVVMSANLNTHEALAATQAENIGEK 391

Query: 203 I--ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I    ++         H T S G+   C  +  +  ++ +A+ A+Y +K++GRN +  F 
Sbjct: 392 ILAALNRTYHFDAIPHHSTPSIGVTLFCGEQTDVEILLKQAELAMYKSKEAGRNALHFFD 451

Query: 260 DIE 262
              
Sbjct: 452 QDM 454


>gi|77460528|ref|YP_350035.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1]
 gi|77384531|gb|ABA76044.1| putative GGDEF domain membrane protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 350

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 101/237 (42%), Gaps = 10/237 (4%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS 88
           +        ++  +  +  + L +      + L     +  + + +     L LG +   
Sbjct: 109 VAAGGVRLFWLGALAQLIGVLLGWSVFGVHFTLTATQTQVWACLPMLTLYPLALGMVCYR 168

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141
           +  +L      +S LSR D L+GLLNH A+             +N +  +   DID+FK 
Sbjct: 169 LAIKLAEHKRTLSALSRTDSLTGLLNHGAWKDLLHLKFQQCRQHNSQAILALIDIDHFKS 228

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND++GH VGD V+  LS +L  V       GR GG+EF          +A  L   LR+
Sbjct: 229 INDSYGHIVGDAVLRQLSHELKFVLDESKLAGRYGGDEFCVILPNLPLSKAEALMEQLRQ 288

Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
            ++  +    S   + +++S G+A               +D+ALY AK +GRN +  
Sbjct: 289 ALDRYRHPDVS--ELRVSLSIGLARYQTSYADALEWFEDSDKALYTAKHTGRNTISV 343


>gi|21231359|ref|NP_637276.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66768588|ref|YP_243350.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21113021|gb|AAM41200.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66573920|gb|AAY49330.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 696

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 13/222 (5%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSG 111
           L   +    +    L L+ +++ IS+L          + + L  +   +   +  D L+ 
Sbjct: 211 LPLSWLASVVAAVTLGLLGLALVISVLSRRFQQRTDVLAQSLAQANQELVLAALHDPLTR 270

Query: 112 LLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
           L N           I       ++ +++  D+D FK +ND +GH +GD+++  ++ +L  
Sbjct: 271 LPNRVLLHEHVLQSIERGQRDGQRFAVMLIDLDGFKAVNDGYGHQLGDQLLIAVAQRLGA 330

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
                  + RLG +EF   A  +  ++AA +A  L + +      +     + ++ S GI
Sbjct: 331 HRRAHGSLARLGADEFVLVADIADPEDAAAIAGHLVQALAL--PFLVGDHELRLSSSVGI 388

Query: 225 AERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           A           ++  AD A+  AK++GRNR   F      T
Sbjct: 389 ALYPEDAGSEHQLMTHADAAMGHAKQAGRNRYSFFDRSMTGT 430


>gi|291617346|ref|YP_003520088.1| YdaM [Pantoea ananatis LMG 20103]
 gi|291152376|gb|ADD76960.1| YdaM [Pantoea ananatis LMG 20103]
          Length = 526

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 60/162 (37%), Positives = 82/162 (50%), Gaps = 10/162 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +   +  D L+ L N   F       L + NE  S+  FDIDYFK+IND++GH +GDK +
Sbjct: 361 LRDDAITDHLTKLYNRRGFEQLTAPYLSAKNEH-SLASFDIDYFKRINDHYGHDIGDKTL 419

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L     T   V R GGEEF      +   EA  +AN +R+ I  +Q +      
Sbjct: 420 VAVAMFLKKGCRTNDIVCRFGGEEFVVFFPNTQISEAESIANRIREHIACAQFSEIG--- 476

Query: 216 IHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +TISAG+ +   HK  I   +   DQ LY AK  GRNRVV
Sbjct: 477 -KMTISAGVESLAHHKNDIEETLLSVDQWLYQAKHEGRNRVV 517


>gi|317127773|ref|YP_004094055.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus cellulosilyticus DSM 2522]
 gi|315472721|gb|ADU29324.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus cellulosilyticus DSM 2522]
          Length = 1016

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 23/198 (11%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVF 133
           ++G I+   + E      +I  L+  D L+GL N           ++    YN KL ++ 
Sbjct: 561 IIGSITN--ISEKKQQEKQIMHLAFHDGLTGLPNRRLLRSRLELAMTDADRYNYKLGLLL 618

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM----------FVGRLGGEEFAAA 183
            D+D FK IND  GH  GD++I  ++D L +   +P            V RLGG+EF   
Sbjct: 619 IDLDRFKVINDTLGHQAGDELIQKVADVLELTMRSPDTHSRAKQEHTTVARLGGDEFIIL 678

Query: 184 ALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRAD 241
               +   +    AN + +  +  +        +  + S GI+    H     ++   AD
Sbjct: 679 LTHITDVSDLQASANLIIEKFK--EPFFIQNQDVFTSASIGISVYPDHGRDYDSLTGNAD 736

Query: 242 QALYVAKKSGRNRVVCFS 259
            A+Y AK++G+N++  +S
Sbjct: 737 IAMYRAKENGKNQMEMYS 754


>gi|217419624|ref|ZP_03451130.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 576]
 gi|217396928|gb|EEC36944.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 576]
          Length = 772

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVII-SITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +Y    N+ L++   IT+++L  + ++  ++ +L      ++QL+  D L+GL N  A +
Sbjct: 278 DYHHTRNVYLLMTGFITLAMLAFFGVATGLIGKLLGREREMTQLAEFDLLTGLANRYATL 337

Query: 120 SSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            SL       S   +L+I+F D+D FK +ND  GH  GD V+   + +L         + 
Sbjct: 338 RSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVANEGALA 397

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EF     G + E+ A  LA  + ++    +     G S  +  S GIA      E
Sbjct: 398 RIGGDEFVVVVKGENVERRAERLAEAIVRMFA--EPFDVRGSSFVLHASIGIALHSVENE 455

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +AD A+Y AK +G+N    ++
Sbjct: 456 SEIDLLKKADLAMYSAKDAGKNCYQFYA 483


>gi|281416844|ref|ZP_06247864.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Clostridium thermocellum JW20]
 gi|281408246|gb|EFB38504.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Clostridium thermocellum JW20]
          Length = 505

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 108/254 (42%), Gaps = 14/254 (5%)

Query: 21  SFSPHTFMIYFSIFFS-IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS 79
           S      +I  +  F  + +AT + +      +I        +  L+  L+L   +I ++
Sbjct: 60  SHIQSCIVILMAFRFGYVGLATAVVLVLAETIFIIEEYLVSFDKYLLLGLTLKFFTIFVT 119

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132
             +  ++        I   R+ +++  D L+G  N   F       +    + N  +S++
Sbjct: 120 SFIAVLTNR----QQIQKKRLERMAITDELTGAYNQRFFHMVLESELEKAKNNNGSVSLI 175

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID FK  ND +G   GD ++   +  L  +     ++ R GG+EFA     +     
Sbjct: 176 MIDIDNFKMYNDIYGRDFGDNILRTTATILSEILDEGSYLCRYGGDEFAVITTNTRLDNL 235

Query: 193 AILANDLRKIIENSQINISSGPSI-HITISAGIAERCH-KEPISTIIYRADQALYVAKKS 250
             +AN+LR+  E  +           +T+S G++E  +     + +IY+AD ALY AK  
Sbjct: 236 EDMANNLRREFERLKQKYYKHKLYEKVTLSIGLSEYPNMSRDKNELIYQADTALYHAKNL 295

Query: 251 GRNRVVCFSDIENN 264
           G+++V  + D    
Sbjct: 296 GKDKVHLYQDALMQ 309


>gi|153829619|ref|ZP_01982286.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|148874895|gb|EDL73030.1| GGDEF family protein [Vibrio cholerae 623-39]
          Length = 443

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 18/230 (7%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102
           +F+A + ++ +       LE  +  N   V+ +      L  ++ S    L     +  +
Sbjct: 219 LFLAMLIMWAVAGAWLSALE--IRRNRREVLRARIRQEHLQRLNHS----LHEQNIKFVE 272

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++  D L+G +N       L             +S++F DIDYFKQ+ND +GH +GD ++
Sbjct: 273 MAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDLL 332

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
              +  +         + R GGEEF      ++ ++A  LA  LR  I +          
Sbjct: 333 REFALVISREIRESDKLVRWGGEEFVVFCAQTTLEQAIELAERLRAKIADHSWIHGGA-- 390

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
             IT S GIA+    E I+  + RAD+ALY AK+ GRNR+     +   +
Sbjct: 391 --ITCSIGIAQM-GDERITETVSRADEALYRAKRLGRNRIEVHYGLMAKS 437


>gi|134093904|ref|YP_001098979.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans]
          Length = 599

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 82/180 (45%), Gaps = 10/180 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
           ++ +L    +R    +  D L+G+ N   F               +  ++ F D+D FK 
Sbjct: 153 LISQLEQEKSRALLQASHDYLTGVPNRRLFYEMAATELARAKRSRKLYALFFLDLDKFKL 212

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR 200
           IND  GH VGD ++  ++ +L         + RLGG+EF       +SE + A +A  L 
Sbjct: 213 INDTLGHAVGDLLLQGVARRLRESLREYDLLARLGGDEFVILVSEMASESDIARVAAKLV 272

Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++ +  +++  G  I ++ S GIA      + + T++  AD A+Y AK +G      F 
Sbjct: 273 DVVRDPFLDL-GGNDIDVSPSIGIALYPRDGQDVETLLMHADLAMYSAKSAGAATYRFFD 331


>gi|119490883|ref|ZP_01623166.1| methyl-accepting chemotaxis protein [Lyngbya sp. PCC 8106]
 gi|119453701|gb|EAW34860.1| methyl-accepting chemotaxis protein [Lyngbya sp. PCC 8106]
          Length = 767

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 12/182 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFK 140
           +I  +    Y ++ QL+ +D L+ + N   F   L    ++        S++  D+D+FK
Sbjct: 586 AIAIQQSELYQQLEQLAILDGLTQIANRRYFDQYLDQEWKRAQREQHSLSLLLLDVDHFK 645

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
             ND +GH  GD+ +  ++  +      +   V R GGEEF      +  + A  +  D+
Sbjct: 646 LYNDTYGHQAGDECLQRVAKAIQETLKRSSDLVARYGGEEFVILLPNTKAEGAIQITQDI 705

Query: 200 RKIIENSQINI-SSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256
              I+   I   SS  S  +T+S GI+            ++ RAD+ALY AK+  RN   
Sbjct: 706 HDSIQQLAIEHSSSSVSQFVTVSIGISTIIPQPLSRFEVLVSRADKALYKAKQQ-RNTYC 764

Query: 257 CF 258
            +
Sbjct: 765 LY 766


>gi|229588015|ref|YP_002870134.1| hypothetical protein PFLU0458 [Pseudomonas fluorescens SBW25]
 gi|229359881|emb|CAY46734.1| conserved GGDEF/EAL domain protein [Pseudomonas fluorescens SBW25]
          Length = 894

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + +  ++  RI +L+  D L+ L N  AFI +L        +  +S++  DID FK+IN
Sbjct: 451 DITQTKLAQQRIERLAYTDNLTNLGNRPAFIRNLDERFARDSDSPISLLLVDIDNFKRIN 510

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++  L+ +L     T   + R    EFA     +  +   ++A+ L   +
Sbjct: 511 DSLGHQTGDKLLISLARRLRNSLSTGGSLARFASNEFAVLLDDTDLETGQLVASQLLATL 570

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I +T S G+A    H     T++  A  AL+ AK +G+++V  F++  
Sbjct: 571 DKPMF--VDNQLISVTGSVGLACAPLHGRDPQTLMRNAGLALHKAKANGKHQVQVFTEAL 628

Query: 263 NNTC 266
           N   
Sbjct: 629 NAEA 632


>gi|91792889|ref|YP_562540.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91714891|gb|ABE54817.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella denitrificans OS217]
          Length = 1450

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 106/220 (48%), Gaps = 15/220 (6%)

Query: 58   FYGLEYILVENLSLVIISITISLL---LGYISG-----SILKELFISYNRISQLSRIDCL 109
            + G    L  + S  ++S+TI  +   LG  S      S +         + +L+  D L
Sbjct: 968  WSGDVDALKSDDSTFLMSLTIDAIKDELGLFSHYVGIFSDITRRKQQEEELRKLTNNDIL 1027

Query: 110  SGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
            +GL N S+    +S+L   +   +++  D+D FK+IND+ GH +GD +I  +++++  + 
Sbjct: 1028 TGLANRSSLQVTLSNLVKKDIHHTLMVLDLDNFKRINDSLGHQIGDSLIISVAERIQAII 1087

Query: 167  GTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
             +   + RLGG+EFA           +A +A  + K +  +  +I S   + I IS GI 
Sbjct: 1088 PSHASLYRLGGDEFAILLDKNPDIASSAAIAGSVIKDL-KTPFSIES-EQLVIGISIGIV 1145

Query: 226  ERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDIENN 264
                 E     ++ +AD A+Y AK +G NR   +++  N 
Sbjct: 1146 LYPEDEQNEQALLRKADIAMYHAKSAGGNRYQFYAESLNQ 1185


>gi|46201023|ref|ZP_00055913.2| COG3706: Response regulator containing a CheY-like receiver domain
           and a GGDEF domain [Magnetospirillum magnetotacticum
           MS-1]
          Length = 314

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 11/192 (5%)

Query: 79  SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131
           +L+    +     E  ++   +  L+  D L+GL N  +F   L             +++
Sbjct: 115 ALMAVVETLRDQTEQKLAQMALQSLAVKDGLTGLANRRSFDEKLEAEWLHNQREGTSMAV 174

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQ 190
           +  D+D+FK  ND +GH +GD  +  ++  +   VF       R GGEEFA     +   
Sbjct: 175 LLMDVDHFKLYNDTYGHQMGDTCLKSVAAAIDKQVFRPSDLAARYGGEEFAVIMPNTDLD 234

Query: 191 EAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEP--ISTIIYRADQALYVA 247
            A  +A+ L + +   ++  S+      +TIS G A     +      ++  AD ALY A
Sbjct: 235 GARHVADRLIEAVRELRLPHSASQTEDCVTISLGAAAFIPSDQRGSGDLVAAADAALYRA 294

Query: 248 KKSGRNRVVCFS 259
           K  GRNRVVC  
Sbjct: 295 KHQGRNRVVCAD 306


>gi|229094411|ref|ZP_04225483.1| Sensory box/GGDEF [Bacillus cereus Rock3-42]
 gi|228688948|gb|EEL42775.1| Sensory box/GGDEF [Bacillus cereus Rock3-42]
          Length = 887

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 97/214 (45%), Gaps = 11/214 (5%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           +  ++    I   +++ V I +   +   Y+    + E      +I+ L+  D L+ L N
Sbjct: 408 IRAYHKNRDIYYLHVTAVPIFLKDHISGVYLMIKDITESKQQQEQINFLAYRDTLTELAN 467

Query: 115 HSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
             AF   +           +  +++F D+D FK IND  GH VGD ++  ++ +L  +  
Sbjct: 468 RRAFHQYVEQAIARSKISKKPFAVMFLDLDRFKVINDTLGHRVGDLLLIAVAKRLERMTT 527

Query: 168 TPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
             M + RL G+EF       +++ +   +A+ + + + N    I +   + I+ S GIA 
Sbjct: 528 PNMKLARLAGDEFTILIENYNKRPDVKKMADTIVEAM-NEPFEIENQH-LQISPSIGIAI 585

Query: 227 RCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                E   +I+  AD A+Y AK  G+N    ++
Sbjct: 586 YPEAGEDPLSILQHADMAMYEAKNRGKNGSSLYT 619


>gi|254464814|ref|ZP_05078225.1| diguanylate cyclase [Rhodobacterales bacterium Y4I]
 gi|206685722|gb|EDZ46204.1| diguanylate cyclase [Rhodobacterales bacterium Y4I]
          Length = 350

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 9/173 (5%)

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            + +  D L+GL N  A    L        + +++  D+D+FKQ+ND  GH  GD V+  
Sbjct: 161 EEQAFTDTLTGLKNRRAMDHVLRRLIASGREFALMHLDLDFFKQVNDTLGHAAGDAVLQQ 220

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSI 216
            +  +V        V R+GG+EF     G    + A LA   +++I+  +  I  G  + 
Sbjct: 221 AARIMVECTRQSDTVARVGGDEFVMILEGV--LDTARLAAIAKRLIQQLEEPIPFGAQTC 278

Query: 217 HITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD-IENNTC 266
            I+ SAG  ++          ++ +AD ALY AK++GR +   + D +E +  
Sbjct: 279 RISASAGTTLSTWQKVPDPQQLLNQADLALYAAKRAGRAQHCFYRDGMEKDEA 331


>gi|124267406|ref|YP_001021410.1| diguanylate cyclase [Methylibium petroleiphilum PM1]
 gi|124260181|gb|ABM95175.1| diguanylate cyclase [Methylibium petroleiphilum PM1]
          Length = 413

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 9/236 (3%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI 85
              +  ++        ++ +A +F    G  P   L    V    L+ +  T+ L L   
Sbjct: 160 ALKLLMAVMIVQAAVPMLRLAGMFSQGAGALPAQSLVVTGVVLPLLLSMLFTVYLCLVLT 219

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFK 140
               +++L  +  ++  L+ ID L+ + N   F     +           ++ FDID+FK
Sbjct: 220 HERTVRDLRETQRQLRVLADIDMLTQVPNRRHFEELATAIVGNGAAPPSVLMLFDIDHFK 279

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +NDN GH VGD  +  ++        T   +GR+GG+EF     G+S  +A  +A+ + 
Sbjct: 280 HVNDNHGHAVGDAALRLVARCTRDTLRTRDVMGRVGGDEFMLLLPGASVDDALHVADRIT 339

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           + ++ +  N      + +++S G+ +    E ++   +RAD ALY AK+ GR R V
Sbjct: 340 RNLDLASKNFP----LPLSLSFGLVQIHTGESLAAAQHRADLALYEAKRQGRRRAV 391


>gi|120599489|ref|YP_964063.1| diguanylate cyclase with PAS/PAC sensor [Shewanella sp. W3-18-1]
 gi|120559582|gb|ABM25509.1| diguanylate cyclase [Shewanella sp. W3-18-1]
          Length = 339

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 11/185 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFF 134
           L  +    L +      ++ +L+  D L+GL N   F   L  Y E        LS+V  
Sbjct: 151 LFVMVMHDLTQHKEENQKLRKLAATDSLTGLANRRYFDEILQHYWEECTAKLRPLSVVII 210

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAA 193
           D+DYFK  ND FGH  GD+ +  ++  +  +         R GGEEFA      + + A 
Sbjct: 211 DVDYFKVFNDQFGHIQGDECLRKIAKVIADIVPLDIGLAARYGGEEFALILPNHNAKMAL 270

Query: 194 ILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKE--PISTIIYRADQALYVAKKS 250
            +A  +++ I   +         + ++ S GIA   + +      ++  AD ALY AK  
Sbjct: 271 TIAQKIQQGINALRFTEQGLRDYVSVSASQGIASEVNGQFRTSMAMLCAADTALYRAKAD 330

Query: 251 GRNRV 255
           GR+R+
Sbjct: 331 GRDRI 335


>gi|317402756|gb|EFV83302.1| hypothetical protein HMPREF0005_01863 [Achromobacter xylosoxidans
           C54]
          Length = 525

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 99/244 (40%), Gaps = 21/244 (8%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYI-------GLTPFYGLEYILVENLSLVIISITISLL 81
           +Y SI + +    V F   ++L           +    G    L E  S+ +    +   
Sbjct: 285 LYRSIAWLVLGTLVTFGLGLWLALRLANRLTSAVQGLVGPALALGEGRSVELPGTRVKEA 344

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFF 134
               +  +     +++ +   L+  D L+GL N   F       ++      E  +I+  
Sbjct: 345 AEVGAALLQASRMLAHAQ--HLAHYDPLTGLCNRVLFGELVLRELAVAQRSGESFAILAI 402

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           D+D FK +ND  GH  GD V+   +D++           R GG+EFA   LG+   +A  
Sbjct: 403 DLDGFKAVNDRHGHAAGDTVLKEAADRMARAIRVSDVAARQGGDEFAVLLLGAGGDDATG 462

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRN 253
           +A  L + +     NI     + ++ S GIA        +  ++ RAD ALY AK  G+ 
Sbjct: 463 VAEALVESLSQPYPNI----QVAVSASIGIAVYPQSGVTMLQLLERADVALYRAKGLGKR 518

Query: 254 RVVC 257
           RV  
Sbjct: 519 RVAF 522


>gi|269104333|ref|ZP_06157029.1| GGDEF family protein [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268160973|gb|EEZ39470.1| GGDEF family protein [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 532

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 62/216 (28%), Positives = 106/216 (49%), Gaps = 13/216 (6%)

Query: 49  FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE-------LFISYNRIS 101
            L +   T F   EY ++   ++ I+ + I+LL   ++   L +       L      + 
Sbjct: 317 LLHFKQSTDFDMNEYWIL--GAIFIVGLVIALLASLVTYQQLSQNQRLQYALTERTKELE 374

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
            L   D L+ LLN  AF  +L  + E  + ++V FDID FK IND +GH  GD+ +  ++
Sbjct: 375 FLVNHDSLTRLLNRRAFRLTLPLWIESKQFTLVGFDIDKFKSINDTYGHIAGDEALIHVT 434

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             +  +      + RLGG+EFA     +   +   + N +R  +E+S + I  G  I+ T
Sbjct: 435 QLVQGLLQKHEQLYRLGGDEFAILMPETDTTKIYEVLNRVRSAVEHSPL-IYQGAKIYCT 493

Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +S G A     +    +IY++D  +Y +K+ GRNR+
Sbjct: 494 LSIG-AVVHSNQEAEALIYQSDLQMYKSKQQGRNRI 528


>gi|258621651|ref|ZP_05716682.1| GGDEF family protein [Vibrio mimicus VM573]
 gi|258585882|gb|EEW10600.1| GGDEF family protein [Vibrio mimicus VM573]
          Length = 440

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 100/222 (45%), Gaps = 18/222 (8%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102
           +F+A + ++         LE  +  N   VI +      L  ++ S    L     +  +
Sbjct: 219 LFLAMLIMWAAAGAWLSALE--IRRNRREVIRARMRQAHLQRLNHS----LHEQNMKYVE 272

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++  D L+G +N       L            + S++F DIDYFKQ+ND +GH +GD ++
Sbjct: 273 MAHRDALTGAINRHGIRDWLQEQARLVRWQLNQFSVLFIDIDYFKQVNDVYGHGIGDDLL 332

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
                 +         + R GGEEF      +   +A  LA+ LR  +EN    +  G  
Sbjct: 333 REFVLVISREIREGDRLVRWGGEEFVVFCAQTGIDQAVDLADRLRTRVENHSW-LHGGE- 390

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +T S GIA+    E ++  + RAD+ALY AK+ GRNR+  
Sbjct: 391 --LTCSIGIAQM-ENERVTETVSRADEALYRAKRLGRNRIEV 429


>gi|240137530|ref|YP_002962001.1| putative diguanylate cyclase; two GGDEF domains [Methylobacterium
           extorquens AM1]
 gi|240007498|gb|ACS38724.1| putative diguanylate cyclase; two GGDEF domains [Methylobacterium
           extorquens AM1]
          Length = 363

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 65/215 (30%), Positives = 103/215 (47%), Gaps = 5/215 (2%)

Query: 43  IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102
             +A   +  + L P      + +  +++ I+    S+LL   +  +  E    Y  +++
Sbjct: 153 ALLAIALVICLPLLPVSEAS-VRLSVIAIFIVDHVTSILLT--TAILALEAERGYAAVAR 209

Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           ++R D L+G LN     +  G   E   I+  D+D+FK IND FGH  GD V+   + + 
Sbjct: 210 MARTDALTGALNRQGLAAETGGVTE-AGIIVADLDHFKAINDRFGHAAGDAVLRDFAARA 268

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
             +      + RLGGEEF     G        LA  LR+ +  S ++   G ++ IT+S 
Sbjct: 269 AALLPEGGHLARLGGEEFGIVLPGRDHNATTYLAERLRRAVGGSPVSWK-GSAVPITVSL 327

Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           G+A     E +S  + RAD+ALY AK  GRNRV  
Sbjct: 328 GVAMLRAGEALSESLERADKALYDAKTDGRNRVRV 362


>gi|229175975|ref|ZP_04303471.1| Sensory box/GGDEF [Bacillus cereus MM3]
 gi|228607468|gb|EEK64794.1| Sensory box/GGDEF [Bacillus cereus MM3]
          Length = 887

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 11/185 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
           Y+    + E      +I+ L+  D L+ L N  AF   +              +++F D+
Sbjct: 437 YLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQYVEQAIARSEISKRPFAVMFLDL 496

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAIL 195
           D FK IND  GH VGD ++  ++ +L  +    M + RL G+EF        ++ +   +
Sbjct: 497 DRFKVINDTLGHRVGDLLLIAVAKRLERLSTPNMKLARLAGDEFTILIENYKKRPDVKKI 556

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254
           A+ +   + N    I S   + I+ S GIA      E   +I+  AD A+Y AK  G+N 
Sbjct: 557 ADTIVAAM-NEPFEIESQH-LQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNG 614

Query: 255 VVCFS 259
              ++
Sbjct: 615 SSLYT 619


>gi|56752244|ref|YP_172945.1| hypothetical protein syc2235_c [Synechococcus elongatus PCC 6301]
 gi|81300668|ref|YP_400876.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Synechococcus elongatus PCC 7942]
 gi|56687203|dbj|BAD80425.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81169549|gb|ABB57889.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Synechococcus elongatus PCC 7942]
          Length = 917

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 87/213 (40%), Gaps = 12/213 (5%)

Query: 64  ILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +  +  S+  +      ++ +++    + E   +   +   +  D L+ L N S  +  L
Sbjct: 444 LFWDRTSISPVKDLAGQIIHFVAVKEDITEQKRNRELLDHQANYDSLTDLPNRSLALDRL 503

Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                     N+ + ++  D+D FK IND  GH  GD ++  ++ +L       + + RL
Sbjct: 504 RQATALSERSNDTVIVMLLDLDRFKNINDTLGHSYGDCLLQEIAKRLRYHLPREITISRL 563

Query: 176 GGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PI 233
           GG+EF        E      L+  L KII  SQ        + IT S G+A   +     
Sbjct: 564 GGDEFLIICPAVKENIHLEKLSQQLLKII--SQPITIEAEELVITASIGVACYPNDGVTP 621

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
             ++  AD A+Y AK++G N    F    N   
Sbjct: 622 EVLMRNADTAMYSAKRNGGNDFQLFMPTMNAEA 654


>gi|117919483|ref|YP_868675.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. ANA-3]
 gi|117611815|gb|ABK47269.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. ANA-3]
          Length = 674

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
             IL +   + +++ +++  D L+GL N +  + ++         +    +++F D+D F
Sbjct: 222 NQILIQFSQTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRSRVHKSSFALMFIDLDRF 281

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND+ GH +GD+ +A ++  L  V G    V RLGG+EF   A    S  +AA   + 
Sbjct: 282 KNINDSLGHALGDQFLARIARILERVVGDKGSVSRLGGDEFVILADSVHSPDQAADFVDK 341

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L  +++ +     +  +IH   S GI+           +I  AD A+Y AK +G N+   
Sbjct: 342 L--LVQLNVPIQLNEHAIHPAASIGISIYPEDGNSAEDLIRHADIAMYSAKAAGSNQWAF 399

Query: 258 FSDIENNTC 266
           F        
Sbjct: 400 FKQQMTERA 408


>gi|312885113|ref|ZP_07744798.1| c-di-GMP phosphodiesterase A-related protein [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309367213|gb|EFP94780.1| c-di-GMP phosphodiesterase A-related protein [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 693

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 8/181 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFG 147
            E   +  +   L  ID L+ L N   F   L  + +    L +++ DID FK IND+ G
Sbjct: 248 TEQISAQTKHEDL-HIDSLTKLDNRFVFTKKLEQHLKSLTPLVLLYLDIDNFKNINDSLG 306

Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206
           H +GDKV+  ++ +L  +      +G LGG+EF        S+Q   +L+  +  +I  +
Sbjct: 307 HHIGDKVLREVALRLKRLLPNETTIGHLGGDEFGVILPNPESKQVTDLLSERIISVI--N 364

Query: 207 QINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265
           Q       S  +  S G +      +    ++  AD A+Y AK  GRNR++ F+D  N  
Sbjct: 365 QPFDLHHFSKRLACSIGSVESPNDGKDARVLLQNADTAMYEAKDRGRNRLIKFNDQMNKE 424

Query: 266 C 266
            
Sbjct: 425 A 425


>gi|288959406|ref|YP_003449747.1| sensory box/GGDEF family protein [Azospirillum sp. B510]
 gi|288911714|dbj|BAI73203.1| sensory box/GGDEF family protein [Azospirillum sp. B510]
          Length = 879

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 11/188 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFK 140
             + E   +  R+  LSR D L+ L N           ++        +++V   +D FK
Sbjct: 432 RDITERKAAQERMEYLSRHDALTLLPNRVLVQDRTEQALARSERNGRLVALVACGLDRFK 491

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND+ GH VGD ++  ++++L  V      + R GG+EF     G  + +A  +   + 
Sbjct: 492 TVNDSLGHAVGDALLRAVAERLKAVVRDTDTISRGGGDEFILLLSGRPDIDA--VVETVA 549

Query: 201 KIIEN-SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            + E  ++  +  G  + +T+S+G+A         +T++  AD AL+ AK +GR+    +
Sbjct: 550 SLHEAMAKPFLVDGHELTVTLSSGVALAPADGRDFATLLKNADTALHHAKAAGRDTHRFY 609

Query: 259 SDIENNTC 266
           ++  N   
Sbjct: 610 AEAMNAEA 617


>gi|238756942|ref|ZP_04618130.1| Diguanylate cyclase [Yersinia aldovae ATCC 35236]
 gi|238704772|gb|EEP97301.1| Diguanylate cyclase [Yersinia aldovae ATCC 35236]
          Length = 357

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 11/208 (5%)

Query: 65  LVENLSLVIISITISLLLGYISGSI------LKELFI-SYNRISQLSRIDCLSGLLNHSA 117
           L+    L+   I I   +  +  +I       KE  I +Y  +   + ID L+ L N ++
Sbjct: 133 LIVKHELIWTQIIIYQFISALCLAICYHALDFKERHIYTYFTMKDRANIDKLTQLNNRAS 192

Query: 118 FISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174
               L    +  +   ++  DID+FK IND +GH  GD V+  +   L        F+GR
Sbjct: 193 ADYRLATIHNRRQACGLMILDIDHFKSINDTYGHDCGDIVLTTVGALLSHAVRDEDFIGR 252

Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234
            GGEEF         Q    +A  +R+ +E+  + +  G  I  TIS G +       + 
Sbjct: 253 YGGEEFIVITRSYDPQTIKSVAERIRERVESLDVLLPDGRKIKATISIGASLYLPGMSML 312

Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIE 262
             +   D+ALY AK+ GRN+VV +S + 
Sbjct: 313 KALKMTDEALYQAKRQGRNQVV-YSRLM 339


>gi|225851399|ref|YP_002731633.1| diguanylate cyclase with GAF sensor [Persephonella marina EX-H1]
 gi|225645783|gb|ACO03969.1| diguanylate cyclase with GAF sensor [Persephonella marina EX-H1]
          Length = 423

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/196 (32%), Positives = 93/196 (47%), Gaps = 11/196 (5%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--- 127
           L ++   ISL+   +S   +  + I+   I + SR D L+ LLN +     +    E   
Sbjct: 230 LKLLEAYISLVKNVLSMISIFTVAIARENIEK-SRRDPLTDLLNRTVMDMIIARTIEISK 288

Query: 128 ----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
                 SI   D+D FK+IND +GH VGD V+  ++  +        FV R GGEEF   
Sbjct: 289 ISETPFSIAMLDVDNFKRINDTYGHIVGDCVLKEIAKIIKKSLRKSDFVFRYGGEEFLVL 348

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRAD 241
              +  + A  +    RK IE + I       I++TIS G+      E ++   II +AD
Sbjct: 349 LPSTDSKHAYRIMERTRKNIEKASIKC-DSHKINVTISIGLITVYPDETLNIKQIIQKAD 407

Query: 242 QALYVAKKSGRNRVVC 257
           Q LY AKK G+N V+ 
Sbjct: 408 QNLYTAKKKGKNLVIA 423


>gi|134299411|ref|YP_001112907.1| response regulator receiver modulated diguanylate cyclase
           [Desulfotomaculum reducens MI-1]
 gi|134052111|gb|ABO50082.1| response regulator receiver modulated diguanylate cyclase
           [Desulfotomaculum reducens MI-1]
          Length = 419

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 9/161 (5%)

Query: 105 RIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
           + D L+   N S     +           +       DID+FK++ND +GH VGD+++  
Sbjct: 256 QYDELTEAYNRSFLQEKVQEEMARSKRTGKCFGFCMIDIDHFKKVNDTYGHLVGDEILRA 315

Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217
               L +       V R GGEEF       +  EA  + N LR+     +  + +G S  
Sbjct: 316 FVKFLKLRIRLSDAVIRYGGEEFVLVLSQIAFDEANRIVNRLREDFSKQKFEV-NGESFS 374

Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
           ++ SAG+A      + ++ +I  AD+ALY AK+SGRN++ C
Sbjct: 375 VSFSAGVAVYPDDSQSLTDLIAAADRALYHAKQSGRNKICC 415


>gi|313673588|ref|YP_004051699.1| diguanylate cyclase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940344|gb|ADR19536.1| diguanylate cyclase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 332

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 103/239 (43%), Gaps = 17/239 (7%)

Query: 27  FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS 86
            +I+  + +      V FI    L ++  T F   E   V  +SL  I I        IS
Sbjct: 99  LLIFSIVLYDKKYLVVHFIVTGILAFVFFTTFDSKESF-VFFISLPFIFI--------IS 149

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139
            +  K    + N I++LS  D ++GLLN S F+  +         Y +  S++  D D  
Sbjct: 150 LNFNKIYITTRNLITELSITDEMTGLLNQSGFMKKIEEEFYRSQRYQKTFSVLMIDSDNL 209

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199
           K IND +GH  G  VI  +++ +        F  R GG+EF    + +    A  +A  +
Sbjct: 210 KLINDTYGHKYGSIVIKSIAEVIKTNIRRTDFAARYGGDEFILCLVETDLDGALEVAERI 269

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           RK  E             ITIS G++      + +  +I  AD+A+Y +K SG+N+   
Sbjct: 270 RKQFELKSFFTKDEKKFTITISIGVSNYPKSGDSLMDVIELADKAMYHSKNSGKNKTSF 328


>gi|308067372|ref|YP_003868977.1| GGDEF domain containing protein [Paenibacillus polymyxa E681]
 gi|305856651|gb|ADM68439.1| GGDEF domain containing protein [Paenibacillus polymyxa E681]
          Length = 543

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 62/277 (22%), Positives = 117/277 (42%), Gaps = 25/277 (9%)

Query: 3   RSLKDFLSIWLCHEKNLESFSPHTFM--------IYFSIFFSIFIATVIFIANIFLFYIG 54
           ++        +  E    SF+P   M        I  ++ F+ F   +  +    L  I 
Sbjct: 268 QNYPGLGWTVIIREPAKVSFAPVEEMKQHILVTGIVSALIFAFFSWLIANLIARPLKLIA 327

Query: 55  LTP---FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111
            T      G +  +  +  +  + +  S L   I+   L E   + +++   ++ D L+G
Sbjct: 328 ETADRLRNGEKVQIPSHKGIKDVEVLSSSLHNLITN--LTETETALDQMELHAQHDKLTG 385

Query: 112 LLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
           L N  A  + L          + L+ ++ D+D FK +ND +GH  GD ++  ++ +L   
Sbjct: 386 LPNRMAVDAYLDHARSVVHKGKVLTFLYMDLDGFKAVNDQYGHLAGDTLLKTVALRLRNC 445

Query: 166 FGTPMFVGRLGGEEFAAAA---LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222
                 V RLGG+EF A     +  +  E   +AN +  I+  ++     G  + +  S 
Sbjct: 446 VREGDIVARLGGDEFIAILHTSINHAIDEGTAIANRI--ILSLNEPIELEGAVVSVGCSI 503

Query: 223 GIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258
           G A   +  E I  ++  AD+ALY +K+ G+N +  +
Sbjct: 504 GGAVWPNDHEEIIEVMRLADEALYASKRKGKNCLTFY 540


>gi|256380853|ref|YP_003104513.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Actinosynnema mirum DSM 43827]
 gi|255925156|gb|ACU40667.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Actinosynnema mirum DSM 43827]
          Length = 720

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 10/183 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQIN 143
            + +  +  NR+   +  D L+GL N + F+  L          +  + + D+D FK IN
Sbjct: 277 DVTDRHLLQNRLRYQALHDPLTGLPNRALFLDRLSRVFGNPDKHRAGLCYLDLDGFKVIN 336

Query: 144 DNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRK 201
           D+ GH +GD+++  +  +L   V G    V R+GG+EF      S+   +   +A+ + +
Sbjct: 337 DSLGHDIGDQLLVEVGRRLDRSVSGDGKLVARMGGDEFVILVEDSTRTDDIVAVADRVLR 396

Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
            +E S I I  G  + ++ S GI ER         ++  AD  LY AK  G++R   +  
Sbjct: 397 ELE-SPIRI-GGHELTVSASIGIVERGLEGTSAPDLVRDADITLYWAKADGKSRWALYDP 454

Query: 261 IEN 263
             N
Sbjct: 455 DRN 457


>gi|240142683|ref|YP_002967196.1| putative GGDEF family protein [Methylobacterium extorquens AM1]
 gi|240012630|gb|ACS43855.1| putative GGDEF family protein [Methylobacterium extorquens AM1]
          Length = 359

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 89/176 (50%), Gaps = 3/176 (1%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKLSIVFFDIDYFKQINDN 145
            + ++EL      +   + +D L+GLLN     + L +      +++  DID+FK IND 
Sbjct: 176 QARMEELRREIEALRTETTLDVLTGLLNRRGLDARLNAMAGSPYTLLMLDIDHFKGINDR 235

Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
           FGHP GD VI  +   +         V R+GGEEFA     + E  A I+A  +R  +  
Sbjct: 236 FGHPAGDSVIRSVGAVIRHCVRDDDVVARMGGEEFAVILPATGEDAAEIVAARIRANVAA 295

Query: 206 SQI-NISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            +     +G  I  +T+S G A     E   +++ RADQALY +K+ GR+RV  F+
Sbjct: 296 RRFVKRQTGEPIGVVTVSVGGASSGSGEGGESVLERADQALYASKRGGRDRVTFFN 351


>gi|218294641|ref|ZP_03495495.1| diguanylate cyclase [Thermus aquaticus Y51MC23]
 gi|218244549|gb|EED11073.1| diguanylate cyclase [Thermus aquaticus Y51MC23]
          Length = 536

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/187 (33%), Positives = 86/187 (45%), Gaps = 18/187 (9%)

Query: 81  LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVF 133
           LLG     +LK++  S      L+  D L+GLLN       L         Y   +S+V 
Sbjct: 357 LLGERIRQVLKQVEWSA-----LALTDPLTGLLNRRGLELELPKLVALARRYGTPVSVVM 411

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            DID FK +ND +GHPVGD+V+  L   +           R GGEEF     G+  Q A 
Sbjct: 412 MDIDRFKWVNDTYGHPVGDEVLRRLGQIVKASVRREDLAVRYGGEEFLLFLYGADRQAAK 471

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEP-ISTIIYRADQALYVAKKS 250
            +   +R      +I     P   +T+SAGIA  E    E  +   I +AD AL  AK++
Sbjct: 472 EVVERIRSRFRTEKIPPIPYP---LTLSAGIAGGEVPEGEAVVEEWILKADYALLRAKET 528

Query: 251 GRNRVVC 257
           GR+RV  
Sbjct: 529 GRDRVTL 535


>gi|160941116|ref|ZP_02088453.1| hypothetical protein CLOBOL_06009 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435677|gb|EDP13444.1| hypothetical protein CLOBOL_06009 [Clostridium bolteae ATCC
           BAA-613]
          Length = 693

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 20/263 (7%)

Query: 13  LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI---LVENL 69
           +C +  L + S   F IY +       +    +A++    +   P +   ++   L  NL
Sbjct: 152 ICLQSRLTAESVLMFYIYIAA--GPIYSLKEALASVLATALAAIPAFRAHHVPPALYSNL 209

Query: 70  SLV-IISITISLLLGYISGSILKELFISYNR---ISQLSRIDCLSGLLNHSAFISSLG-- 123
            L   IS+ +S +  +I  S L+ +  + +    + + +  D L+ L N + +   L   
Sbjct: 210 FLYSFISLFLSQMRCHIIVSNLQMVRKARDEQVCLQERADKDPLTQLFNRNGYSLRLEEL 269

Query: 124 -----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGG 177
                  +  ++++  DIDYFKQ ND +GH  GD+ +  ++  L   +      + R GG
Sbjct: 270 IPYSIRLHVPVAVIMIDIDYFKQYNDTYGHVQGDECLKKVAAALSGSIHRENDLICRFGG 329

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAGIAE--RCHKEPIS 234
           EEF          +A  + + LRK + + +I  ++   S  +TISAG+        +   
Sbjct: 330 EEFQILLCDVHPSDAIKVGDRLRKSVADLKIPAANRSASPFVTISAGVVSTVLTSMDDYH 389

Query: 235 TIIYRADQALYVAKKSGRNRVVC 257
            ++  AD  LY AK  G+N +  
Sbjct: 390 KLVRAADDELYYAKSHGKNMISF 412


>gi|119773284|ref|YP_926024.1| sensory box protein [Shewanella amazonensis SB2B]
 gi|119765784|gb|ABL98354.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella amazonensis SB2B]
          Length = 1069

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 11/184 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            +         I   +  D L+ L N       LG           KL+++  D+D FK 
Sbjct: 615 DISRRKQYEQDIWYKANFDTLTDLPNRKLLSERLGHELKMAEHDGRKLAVMVLDLDRFKY 674

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLR 200
           IND  GH  GD ++  ++ +L  V G+  F+ RLGG+EF       +++ A    A  L 
Sbjct: 675 INDTQGHDCGDLLLKAVAKRLQTVMGSTDFIARLGGDEFVIVLPRLAQEHAVEQYAKRLL 734

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           + + +    +  G S+ ++ S GI         + T++  A+ A+Y AK  GRN    F+
Sbjct: 735 QSMGD-PFKVEQG-SMSVSASLGIGLYPQDGLDVETLLSNAETAMYGAKDEGRNHFKYFT 792

Query: 260 DIEN 263
              N
Sbjct: 793 QEMN 796


>gi|327393791|dbj|BAK11213.1| diguanylate cyclase YdaM [Pantoea ananatis AJ13355]
          Length = 524

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 81/162 (50%), Gaps = 10/162 (6%)

Query: 100 ISQLSRIDCLSGLLNHSAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           +   +  D L+ L N   F       L + NE  S+  FDIDYFK+IND++GH +GDK +
Sbjct: 359 LRDDAITDHLTKLYNRRGFEQLTAPYLSAKNEH-SLASFDIDYFKRINDHYGHDIGDKTL 417

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L     T   V R GGEEF      +   EA  +AN +R+ I  +Q +      
Sbjct: 418 VAVAMFLKKGCRTNDIVCRFGGEEFVVFFPNTQISEAESIANRIREHIACAQFSEVG--- 474

Query: 216 IHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
             +TISAG+ +   H   I   +   DQ LY AK  GRNRVV
Sbjct: 475 -KMTISAGVESLAHHNNDIEETLLSVDQWLYQAKHEGRNRVV 515


>gi|291287062|ref|YP_003503878.1| response regulator receiver modulated diguanylate cyclase
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884222|gb|ADD67922.1| response regulator receiver modulated diguanylate cyclase
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 424

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 11/175 (6%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGH 148
           S   +  ++  D L+ L N                 Y  K S++  D D FK +N++  +
Sbjct: 252 SKKELELIAVTDKLTRLHNRQKLDQVMNYEMSQFQRYGTKFSVIIIDADDFKTVNNSHSY 311

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
            +GDK++  +S  L++        GR GG+EF      +SE +A I+A  LRK I     
Sbjct: 312 HIGDKILVKISGILLMNVRDSDTCGRWGGDEFLVILPKASEGDAVIVAEKLRKTIAERDY 371

Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            I +    ++T+S G+AE    E ++ ++  A +ALY AKKSG+N +V +S+ +N
Sbjct: 372 GIDN----NVTVSIGVAEIEKGETVAKLVASAGKALYKAKKSGKNCIVAYSETDN 422


>gi|193064512|ref|ZP_03045592.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E22]
 gi|193070800|ref|ZP_03051734.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           E110019]
 gi|194428457|ref|ZP_03060997.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B171]
 gi|209918281|ref|YP_002292365.1| hypothetical protein ECSE_1090 [Escherichia coli SE11]
 gi|192927764|gb|EDV82378.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E22]
 gi|192955911|gb|EDV86380.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           E110019]
 gi|194413509|gb|EDX29791.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B171]
 gi|209911540|dbj|BAG76614.1| conserved hypothetical protein [Escherichia coli SE11]
          Length = 476

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 22/258 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LV 66
            + +WL        F+   + I+  +    F A +  I+ +F+    ++ +Y    I +V
Sbjct: 223 MIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVV 282

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             L++++I +            I   L ++ N    ++  D L+ + N + F + L    
Sbjct: 283 SKLTVMVIFMC----------HIFSALRVTKN----IAHRDPLTNIFNRNYFFNELTVQS 328

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +      ++  DID+FK++ND +GHPVGD+VI  + + +         + R+GGEEF 
Sbjct: 329 ASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFG 388

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYR 239
                   + A  LA  +R+ +E    +         +TIS G +  + +    + I   
Sbjct: 389 VLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRL 448

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK++GRN+VV 
Sbjct: 449 ADNALYEAKETGRNKVVV 466


>gi|168178633|ref|ZP_02613297.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum NCTC 2916]
 gi|182670303|gb|EDT82277.1| putative sensory box-containing diguanylate cyclase [Clostridium
           botulinum NCTC 2916]
          Length = 419

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 90/182 (49%), Gaps = 11/182 (6%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140
             + E  I  ++  Q++  D L+ L N ++F+  L             L+I+F D+D FK
Sbjct: 240 RDITERKIYNDKTKQMAYFDSLTELPNRNSFLKQLEHEIKLSKKKQSLLAIMFLDLDKFK 299

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
           ++NDNFGH  GDK++  ++ ++     +   + R GG+EF       + E++   LA D+
Sbjct: 300 EVNDNFGHCTGDKLLWQVAKRVKNTISSKDLIARFGGDEFTILIRNIAHEKQVEDLAMDI 359

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            ++ +  +     G  ++I  S GI+           +I +AD+A+Y AKK G N+   +
Sbjct: 360 IEVFK--EPICIEGIYVNIKTSIGISFFPKDGHTSQELIKKADKAMYDAKKRGSNKFQIY 417

Query: 259 SD 260
            D
Sbjct: 418 KD 419


>gi|167918107|ref|ZP_02505198.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei BCC215]
          Length = 772

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVII-SITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +Y    N+ L++   IT+++L  + ++  ++ +L      ++QL+  D L+GL N  A +
Sbjct: 278 DYHHTRNVYLLMTGFITLAMLAFFGVATGLIGKLLGREREMTQLAEFDLLTGLANRYATL 337

Query: 120 SSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            SL       S   +L+I+F D+D FK +ND  GH  GD V+   + +L         + 
Sbjct: 338 RSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVANEGALA 397

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EF     G + E+ A  LA  + ++    +     G S  +  S GIA      E
Sbjct: 398 RIGGDEFVVVVKGENVERRAERLAEAIVRMFA--EPFDVRGSSFVLHASIGIALHSVENE 455

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +AD A+Y AK +G+N    ++
Sbjct: 456 SEIDLLKKADLAMYSAKDAGKNCYQFYA 483


>gi|42528080|ref|NP_973178.1| GGDEF domain-containing protein [Treponema denticola ATCC 35405]
 gi|41819125|gb|AAS13097.1| GGDEF domain protein [Treponema denticola ATCC 35405]
          Length = 1774

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 85/175 (48%), Gaps = 11/175 (6%)

Query: 93   LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145
            L +   R  Q +  D L+G      F       I +L + N K S++ +D+D FK IND 
Sbjct: 1429 LLVESKRFQQSASYDTLTGAYTRKYFEVFFKNIIKNLYNSNSKFSLILYDLDKFKNINDT 1488

Query: 146  FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205
            +GH VGD V+  ++  ++        +GR GGEEF      +  Q+A   A   RK IEN
Sbjct: 1489 YGHLVGDIVLKRVTQTILDSLSQGQILGRYGGEEFTVILPDTDSQKALKTAEYFRKKIEN 1548

Query: 206  SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                        ITIS GIA    H +  S ++  ADQALY +K +GRN+   ++
Sbjct: 1549 LVFTEFDTA---ITISLGIATFPEHGKTTSELLSNADQALYHSKNTGRNKSTVWA 1600


>gi|27379924|ref|NP_771453.1| hypothetical protein blr4813 [Bradyrhizobium japonicum USDA 110]
 gi|27353077|dbj|BAC50078.1| blr4813 [Bradyrhizobium japonicum USDA 110]
          Length = 917

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYF 139
           +   + E      RI+ L+  D L+ L N + F   L          E +++ + DID F
Sbjct: 457 THEDITERRRIEERITHLAHYDALTDLPNRAMFHEHLRQELAAITDGEAIAVHYIDIDEF 516

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198
           K +ND  GH VGD+++  ++  L    G   FV RLGG+EFA      +S  +   L   
Sbjct: 517 KGVNDALGHLVGDELLKSVATSLSRCAGPADFVARLGGDEFAIVQGAVTSPDQVNDLVAR 576

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + + I         G  +    S GIA    H   +  I+  AD A+Y AK +GR     
Sbjct: 577 VFQAIRA--PFDCMGHHLTTDASIGIALAPGHGTVLDQILKNADLAMYAAKSAGRRTYRF 634

Query: 258 FSDIEN 263
           F    +
Sbjct: 635 FEPEMD 640


>gi|325925985|ref|ZP_08187351.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
 gi|325543581|gb|EGD14998.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas
           perforans 91-118]
          Length = 954

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 8/172 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           +EL  +   ++  +  D L+GLLN S  + ++             L++V  D+D+FKQ+N
Sbjct: 774 RELENARAALALKASHDALTGLLNRSGILEAMAEELQGCAHGEHPLAVVLIDLDHFKQVN 833

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D  GH VGD V+A +  +L         VGR GGEE      G S+Q    L   + + +
Sbjct: 834 DEHGHLVGDAVLAKVGARLTACLRDSDKVGRYGGEELLLLLPGMSQQSQHRL-RAIHEAL 892

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +   + +   + +T S G++     +  ++++ RAD+ALY AK+SGRNR+
Sbjct: 893 SIAPYEVGAARPLQVTCSVGVSWFRVGDTAASLLARADEALYRAKRSGRNRI 944


>gi|300313030|ref|YP_003777122.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300075815|gb|ADJ65214.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 320

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 19/190 (10%)

Query: 85  ISGSILKELFISYNRIS-------QLSRIDCLSGLLNHSAFISSLG-------SYNEKLS 130
           I+G++LK   +++  +         ++  D L+GL N   F S L           + +S
Sbjct: 119 INGTVLKARVLTHLTLKLQSDFYLNIAVTDSLTGLFNRRKFDSELAEKWELCKRSGQAMS 178

Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSE 189
           ++  DID+FKQ ND++GH  GD  +A ++  +      +   V R GGEEFA     +  
Sbjct: 179 LLLIDIDHFKQYNDHYGHQAGDHCLAEVAHTIRSNFHRSYDCVARYGGEEFACILPMTGR 238

Query: 190 QEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAE---RCHKEPISTIIYRADQALY 245
           ++A   A ++   +    +  + S  S  +++S G+A      H      ++  AD+ LY
Sbjct: 239 EQAIRQAQEVCHSVARLHLPHARSDTSAWVSLSIGVATMIAPDHNASPVALLALADKNLY 298

Query: 246 VAKKSGRNRV 255
            AK +GR +V
Sbjct: 299 AAKANGRAQV 308


>gi|291614799|ref|YP_003524956.1| diguanylate cyclase with PAS/PAC sensor and hemerythrin-like
           metal-binding domain [Sideroxydans lithotrophicus ES-1]
 gi|291584911|gb|ADE12569.1| diguanylate cyclase with PAS/PAC sensor and hemerythrin-like
           metal-binding domain [Sideroxydans lithotrophicus ES-1]
          Length = 499

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 11/177 (6%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142
           +  L    + +   +  D L+GL N       L             L++ + D+D FKQ+
Sbjct: 323 ITHLVERQHVLEVEANHDALTGLPNRRLLQDRLEQALTRSKRGGRMLAVCYLDLDGFKQV 382

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRK 201
           ND  GH  GD V+  ++ +LV V      V RLGG+EF         E+    L   L +
Sbjct: 383 NDTLGHDAGDDVLRLIAGRLVKVLRGEDTVVRLGGDEFVLLLGDLDGEENVVQLLTRLLQ 442

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
            I   Q     G    +T S G+            ++  AD+A+  AK+ G++R   
Sbjct: 443 DIA--QPMSIHGSRAQVTASIGVTFYPRDHSEPEVLLKHADEAMLAAKREGKSRFHF 497


>gi|254500077|ref|ZP_05112229.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222441375|gb|EEE48053.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 809

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 10/180 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQ 141
           + + +L  +  +I   +R D L+GLLN   F   +         + +++++FFD+D FK 
Sbjct: 345 ADICQLKAAEAKILHQARTDFLTGLLNRHGFTHRMNEAIDAADADHEIAVLFFDLDNFKW 404

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLR 200
           +NDN GH  GD+V+  ++ ++  +  T    GR GG+EFA    G      A  LA  + 
Sbjct: 405 VNDNLGHFAGDQVLKLVTQRVSKLLKTDDCFGRFGGDEFAILLSGGDVRARAVDLATRIN 464

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++++  Q    SG  + I+ S GI+      +    ++  +D A+Y  K SGRN    F 
Sbjct: 465 QVLK--QPISLSGRQLQISASIGISYYPENADTADDLLQTSDVAMYRQKGSGRNGHCVFD 522


>gi|188581437|ref|YP_001924882.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium populi BJ001]
 gi|179344935|gb|ACB80347.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium populi BJ001]
          Length = 777

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 10/174 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138
           +   + E   +  RI+ ++  D L+GL N + F   L              +++  D+D 
Sbjct: 334 AAIDVTEQRRAEARITHMAHHDALTGLPNRALFAVRLAEAIAEHARTGVAAALLCLDLDK 393

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK +ND  GHP GD ++  +++++         V RLGG+EFA             +A  
Sbjct: 394 FKFVNDTLGHPAGDALLRQVAERITACLRREDLVARLGGDEFAVLLRNPDAATVDTIAGR 453

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251
           + + +    I +       I +S G A    H      ++  AD ALY AK  G
Sbjct: 454 IIEALSR-PIRLGD-RECQIGVSVGFARLPEHGTESDILLRNADLALYRAKAEG 505


>gi|149375436|ref|ZP_01893206.1| hypothetical protein MDG893_16307 [Marinobacter algicola DG893]
 gi|149360141|gb|EDM48595.1| hypothetical protein MDG893_16307 [Marinobacter algicola DG893]
          Length = 397

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 114/247 (46%), Gaps = 20/247 (8%)

Query: 20  ESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS 79
            S       + F++   + ++ V+ I   +L    L   +GL  IL+ ++ L + +    
Sbjct: 152 PSLPVGILKVLFTMHGVLMMSQVLVIGADWLGINQLHTGFGLRLILINHILLAMATALAL 211

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS--------AFISSLGSYNEKLSI 131
            LL +           S  R+  ++  D L+GL N          AF ++L +    +++
Sbjct: 212 PLLAF---------TQSEQRLRIMAERDGLTGLYNRRSLFREGIRAFDNALQT-QSPMAV 261

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  D+D+FKQIND +GH  GD+ + F++  L         +GR+GGEEF      S+E +
Sbjct: 262 LMMDLDHFKQINDRWGHAAGDEALRFVARTLRKELRNDDIIGRIGGEEFTVVLRISAEDD 321

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKS 250
             I+   L   I N+   I  G  ++++ S G  ER +     + ++  AD ALY AK  
Sbjct: 322 VRIITRRLLDAIANNGREI-QGLPLYLSASIGGVERANRHTTFADMMIEADAALYNAKNK 380

Query: 251 GRNRVVC 257
           GRNR   
Sbjct: 381 GRNRAEF 387


>gi|28898063|ref|NP_797668.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|260878413|ref|ZP_05890768.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|260896992|ref|ZP_05905488.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|28806277|dbj|BAC59552.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087698|gb|EFO37393.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|308091230|gb|EFO40925.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
          Length = 381

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 9/174 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144
           +L  +  ++  LS  D L+ L N  + I +L    +        L  +  D DYFKQ+ND
Sbjct: 194 QLLTANKQLEALSLTDSLTQLPNRRSAIKTLKKLWDDTEHKTLPLVCIMIDADYFKQVND 253

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD V+  L+  L   F +   V RLGG+EF      +       +A  +RK + 
Sbjct: 254 TCGHEAGDLVLIELAQALKYHFRSDDIVCRLGGDEFFVICPDTGLDGGLHVAEMVRKQVS 313

Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257
              +     P    +IS G+AER       + +I  AD+++Y+AK+ G+NRV  
Sbjct: 314 QMLVPTCYEPWRG-SISVGVAERTENMSTYTDLIRAADESVYLAKQEGKNRVRA 366


>gi|117918591|ref|YP_867783.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. ANA-3]
 gi|117610923|gb|ABK46377.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. ANA-3]
          Length = 1077

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 11/186 (5%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141
            + +       +   +  D L+GL N   F   L          + KL+I+  D+D FK 
Sbjct: 619 DISKRKQYEQDLWYQANFDTLTGLPNRKLFNERLQHEIQLAQHDSRKLAILLIDLDQFKY 678

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLR 200
           IND  GH  GD ++  ++ +L  + G   FV R+GG+EF       + + A   +A+ + 
Sbjct: 679 INDVQGHATGDLLLQDVAKRLENIAGKNDFVARIGGDEFVLILPRVTNEFAIEHMASRII 738

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           + +  +  N++    I I+ S GI         +S++    + A+Y AK +GRN    F+
Sbjct: 739 ETLA-TPFNLNE-REIQISASFGIGVYPEDGLDVSSLTRNTEMAMYQAKDAGRNNFKYFT 796

Query: 260 DIENNT 265
              N  
Sbjct: 797 SGMNQA 802


>gi|332530518|ref|ZP_08406458.1| diguanylate cyclase/phosphodiesterase [Hylemonella gracilis ATCC
           19624]
 gi|332040020|gb|EGI76406.1| diguanylate cyclase/phosphodiesterase [Hylemonella gracilis ATCC
           19624]
          Length = 709

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 88/209 (42%), Gaps = 13/209 (6%)

Query: 71  LVIISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122
           L++++   S++  ++      +   L  S N++ + S  D L+GL N       L     
Sbjct: 233 LLLLATITSMIDAHMQTQTALLAASLKNSNNQLKEQSLRDGLTGLPNRRMLDERLRLAVE 292

Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                    +++F D+D FK +ND+FGH  GD V+  ++ +L         V R+GG+EF
Sbjct: 293 RSERDGHSFALLFVDLDGFKPVNDSFGHRFGDDVLREMARRLTAHLRAIDAVARVGGDEF 352

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSIHITISAGIAERCHKEPISTII 237
                   + +A            ++ +   +  S   + ++ S GIA          ++
Sbjct: 353 VILLDNQGDADAIARIARRIIDDVSAVVRGGDEDSPQEVRLSCSIGIARFPRDGAADQLL 412

Query: 238 YRADQALYVAKKSGRNRVVCFSDIENNTC 266
            +AD A++ AK++G    V +    +   
Sbjct: 413 VQADAAMHAAKRAGGAHFVFYEPHMSARA 441


>gi|324117112|gb|EGC11020.1| GGDEF domain-containing protein [Escherichia coli E1167]
          Length = 476

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 22/258 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LV 66
            + +WL        F+   + I+  +    F A +  I+ +F+    ++ +Y    I +V
Sbjct: 223 MIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVV 282

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             L++++I +            I   L ++ N    ++  D L+ + N + F + L    
Sbjct: 283 SKLTVMVIFMC----------HIFSALRVTKN----IAHRDPLTNIFNRNYFFNELTVQS 328

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +      ++  DID+FK++ND +GHPVGD+VI  + + +         + R+GGEEF 
Sbjct: 329 ASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFG 388

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYR 239
                   + A  LA  +R+ +E    +         +TIS G +  + +    + I   
Sbjct: 389 VLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENTLNPNEIYRL 448

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK++GRN+VV 
Sbjct: 449 ADNALYEAKETGRNKVVV 466


>gi|296272919|ref|YP_003655550.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
 gi|296097093|gb|ADG93043.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299]
          Length = 631

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 59/186 (31%), Positives = 87/186 (46%), Gaps = 23/186 (12%)

Query: 87  GSILKELFISYNRI----------SQLSRIDCLSGLLNHSAFI-------SSLGSYNEKL 129
            ++ KEL I    +           +LS  D L+ + N              +      L
Sbjct: 449 NNLAKELDIRTKELINAEASRAFHEKLSNTDALTKVYNRRFLEDFSKKYFEIIKREKTTL 508

Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189
           SI+  DID FK INDN+GH  GD+V+  L + +        F+ RLGG+EF      S+ 
Sbjct: 509 SILIVDIDDFKTINDNYGHEAGDEVLLKLVELMQNKIRENDFIVRLGGDEFLVLLPNSNI 568

Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAK 248
           + A I+A  L K I  ++ N         T+S G AE     + I+ +I RAD+ LY AK
Sbjct: 569 KGAKIVAEKLLKSICEAKNNYK-----RFTVSIGSAEFNLEDKDINCLIRRADEELYKAK 623

Query: 249 KSGRNR 254
           K+G+N+
Sbjct: 624 KAGKNQ 629


>gi|253998638|ref|YP_003050701.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4]
 gi|253985317|gb|ACT50174.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Methylovorus sp. SIP3-4]
          Length = 682

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 78/185 (42%), Gaps = 10/185 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L +  ++  ++ +L+  D ++ L N   F   L           +   ++F D+D FK +
Sbjct: 238 LSQRKLAEEQLDKLAYYDTVTHLPNRHFFNEQLTLMLEHAAQRQQSCYLMFIDLDNFKSV 297

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD ++     +++        + R+GG+EFA              A+ +  +
Sbjct: 298 NDTLGHLAGDSLLREAGSRILQTLVPGSILCRIGGDEFAIILRDQPLSAIDATASAIIAL 357

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDI 261
              S+  + +   + +  S GI+        +S ++  AD A+Y AK  G+N    +S  
Sbjct: 358 F--SEKFVINAHEVFVGASIGISNFPADADHVSGLLRNADTAMYWAKADGKNTFRYYSRE 415

Query: 262 ENNTC 266
             ++ 
Sbjct: 416 LEDSA 420


>gi|167908702|ref|ZP_02495907.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei NCTC 13177]
          Length = 772

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVII-SITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +Y    N+ L++   IT+++L  + ++  ++ +L      ++QL+  D L+GL N  A +
Sbjct: 278 DYHHTRNVYLLMTGFITLAMLAFFGVATGLIGKLLGREREMTQLAEFDLLTGLANRYATL 337

Query: 120 SSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            SL       S   +L+I+F D+D FK +ND  GH  GD V+   + +L         + 
Sbjct: 338 RSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVANEGALA 397

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EF     G + E+ A  LA  + ++    +     G S  +  S GIA      E
Sbjct: 398 RIGGDEFVVVVKGENVERRAERLAEAIVRMFA--EPFDVRGSSFVLHASIGIALHSVENE 455

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +AD A+Y AK +G+N    ++
Sbjct: 456 SEIDLLKKADLAMYSAKDAGKNCYQFYA 483


>gi|104781367|ref|YP_607865.1| diguanylate cyclase [Pseudomonas entomophila L48]
 gi|95110354|emb|CAK15062.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           entomophila L48]
          Length = 348

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 12/192 (6%)

Query: 77  TISLLLGYISGSIL----KELFISYNRISQLSRIDCLSGLLNH---SAFISS----LGSY 125
             +L  GY+    L    ++L +  +R  + + +D L+ L N    +AF           
Sbjct: 150 LATLAEGYLQLRSLIQANRDLRLEMDREQRKALLDPLTQLWNRGALAAFQDRERRLAEEQ 209

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
             KL  V+ D+D+FK +ND  GH  GD V+   + +L         + R GGEEF A   
Sbjct: 210 GLKLGTVYADLDHFKSVNDKHGHAEGDLVLCECARRLRAALRPDDLLVRQGGEEFVALLR 269

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245
            +  +E  ++A  +R +I    + +SSGP + +++S G       E I   + RAD  LY
Sbjct: 270 VNDREELMLIAERVRLLIGGGPVQLSSGP-LRVSVSIGCTLLSDSEEIDDALRRADSGLY 328

Query: 246 VAKKSGRNRVVC 257
            AK+ GR+RVV 
Sbjct: 329 AAKQGGRDRVVY 340


>gi|91778066|ref|YP_553274.1| diguanylate cyclase [Burkholderia xenovorans LB400]
 gi|91690726|gb|ABE33924.1| Putative diguanylate cyclase (GGDEF domain) [Burkholderia
           xenovorans LB400]
          Length = 338

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/215 (25%), Positives = 92/215 (42%), Gaps = 21/215 (9%)

Query: 62  EYILVENLSLVI--ISITISLLLGYISGSILKELFISYNR-------ISQLSRIDCLSGL 112
           EY+ + ++  V+   +  +  L+G++    + E   +  +       +  LS  D L+G+
Sbjct: 121 EYVWLRDVVHVVRDANGDVQSLVGFMF--DISERKKAEEKVAALQRELEALSFKDGLTGV 178

Query: 113 LNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165
            N  AF ++L         +   LS++  DID+FK  ND +GH  GD+ +  ++  L   
Sbjct: 179 GNRRAFDTTLQREWAGALRHAAPLSLIMVDIDFFKSYNDYYGHVQGDECLKRVAGVLGSA 238

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGI 224
                FVGR GGEEFA     +    A  +A   R  I   +I     P    +T S G+
Sbjct: 239 VRPGDFVGRFGGEEFALILPNTGADAARQVAERCRDRIAAEEIAHERSPFRQTVTASFGV 298

Query: 225 AE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                   +     +   D  LY AK +GR+ +  
Sbjct: 299 GTTIPAEADDPVAFVNLVDTQLYRAKDNGRDCIAA 333


>gi|126173611|ref|YP_001049760.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|125996816|gb|ABN60891.1| diguanylate cyclase [Shewanella baltica OS155]
          Length = 518

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           KE      +++ L   D L+ L N +A    +         +   L +   DID+FK IN
Sbjct: 347 KERLFEQQKLNLL---DSLTQLPNRAALEERMELEYRNYQRHKSPLWVAVADIDHFKTIN 403

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+FGH  GDK +  ++  L        FV R GGEEF       +  + A L N +R+ +
Sbjct: 404 DSFGHSTGDKTLQVIAMALKNSLRDTEFVARYGGEEFVLLLPDVAPADIAQLLNRVREKV 463

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +N      +   I +T+S G A+    E I     RAD ALY AK   R+RVV 
Sbjct: 464 KNIPFKFKN-QRITVTVSIGAAQVMGSELIHETFERADAALYKAKHESRDRVVI 516


>gi|126452559|ref|YP_001065439.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106a]
 gi|134281056|ref|ZP_01767765.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 305]
 gi|167718680|ref|ZP_02401916.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei DM98]
 gi|167737694|ref|ZP_02410468.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 14]
 gi|167821655|ref|ZP_02453335.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 91]
 gi|167823299|ref|ZP_02454770.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 9]
 gi|167910079|ref|ZP_02497170.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 112]
 gi|226194367|ref|ZP_03789965.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei Pakistan 9]
 gi|237811449|ref|YP_002895900.1| diguanylate cyclase/phosphodiesterase [Burkholderia pseudomallei
           MSHR346]
 gi|242317424|ref|ZP_04816440.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106b]
 gi|254181306|ref|ZP_04887903.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1655]
 gi|254190675|ref|ZP_04897182.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254202487|ref|ZP_04908850.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei FMH]
 gi|126226201|gb|ABN89741.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106a]
 gi|134247362|gb|EBA47447.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 305]
 gi|147746734|gb|EDK53811.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei FMH]
 gi|157938350|gb|EDO94020.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|184211844|gb|EDU08887.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1655]
 gi|225933452|gb|EEH29441.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei Pakistan 9]
 gi|237504493|gb|ACQ96811.1| diguanylate cyclase/phosphodiesterase [Burkholderia pseudomallei
           MSHR346]
 gi|242140663|gb|EES27065.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106b]
          Length = 772

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVII-SITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +Y    N+ L++   IT+++L  + ++  ++ +L      ++QL+  D L+GL N  A +
Sbjct: 278 DYHHTRNVYLLMTGFITLAMLAFFGVATGLIGKLLGREREMTQLAEFDLLTGLANRYATL 337

Query: 120 SSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            SL       S   +L+I+F D+D FK +ND  GH  GD V+   + +L         + 
Sbjct: 338 RSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVANEGALA 397

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EF     G + E+ A  LA  + ++    +     G S  +  S GIA      E
Sbjct: 398 RIGGDEFVVVVKGENVERRAERLAEAIVRMFA--EPFDVRGSSFVLHASIGIALHSVENE 455

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +AD A+Y AK +G+N    ++
Sbjct: 456 SEIDLLKKADLAMYSAKDAGKNCYQFYA 483


>gi|323947186|gb|EGB43194.1| GGDEF domain-containing protein [Escherichia coli H120]
          Length = 476

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 22/258 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LV 66
            + +WL        F+   + I+  +    F A +  I+ +F+    ++ +Y    I +V
Sbjct: 223 MIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVV 282

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             L++++I +            I   L ++ N    ++  D L+ + N + F + L    
Sbjct: 283 SKLTVMVIFMC----------HIFSALRVTKN----IAHRDPLTNIFNRNYFFNELTVQS 328

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +      ++  DID+FK++ND +GHPVGD+VI  + + +         + R+GGEEF 
Sbjct: 329 ASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFG 388

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYR 239
                   + A  LA  +R+ +E    +         +TIS G +  + +    + I   
Sbjct: 389 VLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRL 448

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK++GRN+VV 
Sbjct: 449 ADNALYEAKETGRNKVVV 466


>gi|15801016|ref|NP_287032.1| hypothetical protein Z1527 [Escherichia coli O157:H7 EDL933]
 gi|15830525|ref|NP_309298.1| hypothetical protein ECs1271 [Escherichia coli O157:H7 str. Sakai]
 gi|195935283|ref|ZP_03080665.1| hypothetical protein EscherichcoliO157_02312 [Escherichia coli
           O157:H7 str. EC4024]
 gi|254792283|ref|YP_003077120.1| putative diguanylate cyclase [Escherichia coli O157:H7 str.
           TW14359]
 gi|12514390|gb|AAG55643.1|AE005302_6 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13360731|dbj|BAB34694.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|209748584|gb|ACI72599.1| hypothetical protein ECs1271 [Escherichia coli]
 gi|209748586|gb|ACI72600.1| hypothetical protein ECs1271 [Escherichia coli]
 gi|209748588|gb|ACI72601.1| hypothetical protein ECs1271 [Escherichia coli]
 gi|254591683|gb|ACT71044.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str.
           TW14359]
 gi|320643017|gb|EFX12218.1| putative diguanylate cyclase [Escherichia coli O157:H- str. 493-89]
          Length = 452

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 22/258 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LV 66
            + +WL        F+   + I+  +    F A +  I+ +F+    ++ +Y    I +V
Sbjct: 199 MIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVV 258

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             L++++I +            I   L ++ N    ++  D L+ + N + F + L    
Sbjct: 259 SKLTVMVIFMC----------HIFSALRVTKN----IAHRDPLTNIFNRNYFFNELTVQS 304

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +      ++  DID+FK++ND +GHPVGD+VI  + + +         + R+GGEEF 
Sbjct: 305 ASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFG 364

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYR 239
                   + A  LA  +R+ +E    +         +TIS G +  + +    + I   
Sbjct: 365 VLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQGNALNPNEIYRL 424

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK++GRN+VV 
Sbjct: 425 ADNALYEAKETGRNKVVV 442


>gi|284052249|ref|ZP_06382459.1| hypothetical protein AplaP_12346 [Arthrospira platensis str.
           Paraca]
 gi|291570783|dbj|BAI93055.1| putative diguanylate cyclase [Arthrospira platensis NIES-39]
          Length = 291

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 92/203 (45%), Gaps = 14/203 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124
           L+E LS     + I L      G ++++          LS  D L+GL N      SL  
Sbjct: 83  LLERLSQTNTDLEIMLETTTAHGDLIEKFS------HDLSLRDSLTGLFNRRYMEESLVR 136

Query: 125 Y-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177
           +        E LSI+  DID+FK  ND +GH  GD V+  +S  L           R GG
Sbjct: 137 HLGRAKEQEEPLSIIIGDIDHFKGFNDRWGHQAGDVVLKAVSRFLENHTRLSDTTCRYGG 196

Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTI 236
           EEF      ++ ++A  +A  LR+ I+N     S      +T+S GIA    H +   ++
Sbjct: 197 EEFVLLLPSTTIEDAHQIAEFLREGIKNLHHQYSYTFMQGLTMSMGIAGFPIHADCQYSL 256

Query: 237 IYRADQALYVAKKSGRNRVVCFS 259
           I  AD ALY +K  GR+RV   S
Sbjct: 257 IRSADTALYYSKTHGRDRVTIAS 279


>gi|297569753|ref|YP_003691097.1| diguanylate cyclase with GAF sensor [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925668|gb|ADH86478.1| diguanylate cyclase with GAF sensor [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 363

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 16/196 (8%)

Query: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------- 123
           L + S+  ++ L         E      +  Q +  D L+G+ N                
Sbjct: 174 LFLFSLAQNMALAL-------ERTRLLEKAQQEAMHDELTGIYNRRFLFDYAHKELCKNL 226

Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183
             N   S++  DID+FKQINDN+GH  GD+V+  ++  L         + R GGEEFA  
Sbjct: 227 RSNAAFSLMLLDIDHFKQINDNYGHLYGDQVLRDMATTLKFKIRQSDVLARYGGEEFAVL 286

Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKE-PISTIIYRAD 241
              ++   A  L   LR  +E   I       +  +T++ G++        +  +   AD
Sbjct: 287 LPNTAANAAFNLGEKLRLEVEKKGITPPGKTQLEKMTVTVGLSSFPADSNSLDQLFSVAD 346

Query: 242 QALYVAKKSGRNRVVC 257
           Q LY  K +GRNR V 
Sbjct: 347 QRLYKGKSAGRNRTVA 362


>gi|189403875|ref|ZP_02785789.2| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4501]
 gi|189368709|gb|EDU87125.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4501]
 gi|320659635|gb|EFX27198.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O55:H7
           str. USDA 5905]
          Length = 476

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 22/258 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LV 66
            + +WL        F+   + I+  +    F A +  I+ +F+    ++ +Y    I +V
Sbjct: 223 MIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVV 282

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             L++++I +            I   L ++ N    ++  D L+ + N + F + L    
Sbjct: 283 SKLTVMVIFMC----------HIFSALRVTKN----IAHRDPLTNIFNRNYFFNELTVQS 328

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +      ++  DID+FK++ND +GHPVGD+VI  + + +         + R+GGEEF 
Sbjct: 329 ASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFG 388

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYR 239
                   + A  LA  +R+ +E    +         +TIS G +  + +    + I   
Sbjct: 389 VLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQGNALNPNEIYRL 448

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK++GRN+VV 
Sbjct: 449 ADNALYEAKETGRNKVVV 466


>gi|270308545|ref|YP_003330603.1| GGDEF domain protein [Dehalococcoides sp. VS]
 gi|270154437|gb|ACZ62275.1| GGDEF domain protein [Dehalococcoides sp. VS]
          Length = 836

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 12/184 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
           I+ E    Y + +  +  D L+ L NH  F   +         +    S++  D+D FK 
Sbjct: 451 IIIENAQLYTQATIRANTDELTRLYNHRHFHERIEQEIARGSRFGNTFSLILLDLDLFKV 510

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
            ND +GH  GD+++  L   L     +     R GGEEFA    G+  ++A  +A  +RK
Sbjct: 511 YNDVYGHLAGDQLLRRLGKILENSIRSIDMAFRYGGEEFAIMLPGTKIEDAYHVAERIRK 570

Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFSD 260
            IE+     SS   + IT S G+A   +   +   II +AD ALY +K++GRNR    +D
Sbjct: 571 NIESK----SSFRDMPITASLGMANWPNDGVMKEEIIAKADAALYRSKETGRNRTSLPAD 626

Query: 261 IENN 264
           + NN
Sbjct: 627 LNNN 630


>gi|115378193|ref|ZP_01465365.1| response regulator/ggdef domain protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|115364781|gb|EAU63844.1| response regulator/ggdef domain protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 217

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 8/171 (4%)

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+ +L+  D  +G  N     + L         ++  LS+VF D+D FK +ND  GH VG
Sbjct: 36  RVQELTITDEHTGCYNARHLRAQLEHEVKRSQRFHHPLSLVFLDLDRFKHVNDTHGHVVG 95

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
             ++  + + LV        V R GG+EF+   + ++   A  +A  +R          S
Sbjct: 96  SALLKEVGELLVSCSRQLDLVFRYGGDEFSLLLVETAPDGALTIARRIRDSFREQHFLQS 155

Query: 212 SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
            G  I +T S G+A    H      +I  AD A+Y AK  GR+ V     +
Sbjct: 156 QGLDIRLTASLGVATFPDHAHSAMDLIRAADFAMYAAKARGRDGVCLAEPL 206


>gi|324998105|ref|ZP_08119217.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudonocardia sp. P1]
          Length = 737

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 25/199 (12%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + E     +R+   +  D L+GL N + F   L +      + ++ + + D+D FK +N
Sbjct: 264 DVTERHRLQSRLQHQAEHDPLTGLPNRALFFHRLTAALDAGPDSRVGVCYLDLDGFKAVN 323

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRK 201
           D  GH  GD++++ ++ +L    G     V R+GG+EF       +   +   +A     
Sbjct: 324 DTLGHDAGDQLLSAVAQRLHDELGVDGHTVARMGGDEFVVLVEACTGTAQLNAVAERALD 383

Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEP--------------ISTIIYRADQALY 245
           ++   +     G  + ++ S GI      H +                + ++  AD  +Y
Sbjct: 384 VVR--RPVALRGREVVVSASIGIVVWPVPHDDDPGGPQDTGEARQSGAAELMQAADTTMY 441

Query: 246 VAKKSGRNRVVCFSDIENN 264
            AK+ GR+R+  F    + 
Sbjct: 442 WAKRDGRDRIAVFDQARHR 460


>gi|220936332|ref|YP_002515231.1| sensory box protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997642|gb|ACL74244.1| sensory box protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 627

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 16/230 (6%)

Query: 39  IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98
           +   +F  ++ +  + ++ F       +E   + ++ +   L+     G+    L +   
Sbjct: 130 LVVPVFAGDMPVGVLAISWFSHRAPESLERRRVAMVEVLAGLI-----GTAFHRLRL-EQ 183

Query: 99  RISQLSRIDCLSGLLNHSAFISSLG------SYNEKL-SIVFFDIDYFKQINDNFGHPVG 151
            +   +  D L+GL N S   + L          E+L +++  D+D FKQ+ND  GH VG
Sbjct: 184 ELETRALYDALTGLPNRSKLFARLEHALYQSRQAERLTAVMVMDLDGFKQVNDRLGHQVG 243

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINI 210
           D+++  ++ +L  V      V RLGG+EF        S  E   +A  L   + N  + +
Sbjct: 244 DRLLQDVAGRLRDVVRRSDMVARLGGDEFVVLVENCASVAEIEHVAGRLVTAL-NFGVGM 302

Query: 211 SSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFS 259
               ++ IT S GI      +     ++  AD A+Y  KK+G  R   F 
Sbjct: 303 GGNLALRITASVGITVYPFDDAAPEALLSHADAAMYEVKKTGGQRYGYFD 352


>gi|74317607|ref|YP_315347.1| diguanylate cyclase [Thiobacillus denitrificans ATCC 25259]
 gi|74057102|gb|AAZ97542.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 538

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 8/184 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQI 142
           +K+L +   ++S L R D ++  LN                 +N   SI   D+D FK +
Sbjct: 355 IKQLELELAQMSALVREDPMTHSLNRRGLDDEFAREASRAERFNTPFSIAVLDVDNFKAL 414

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD+ +  L             + R+GGEEF      +   EA  +   L++ 
Sbjct: 415 NDRRGHNTGDEALIHLVKVAKEELRLSDHIARIGGEEFLIILPNTPVAEAVQIVTRLQRS 474

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +   +  + +   + IT SAG+AER   E    +I RAD A+Y AK SG+NRV    D  
Sbjct: 475 L-TKKYFLDNNERVLITFSAGVAERRAGETQEALIARADSAMYEAKHSGKNRVCVAPDAL 533

Query: 263 NNTC 266
               
Sbjct: 534 PQAA 537


>gi|58582410|ref|YP_201426.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84624284|ref|YP_451656.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|58427004|gb|AAW76041.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368224|dbj|BAE69382.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 432

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 9/166 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+GL N   F+         L S ++ ++    DID+FK IND +GH VGD
Sbjct: 266 LQDLATRDFLTGLPNRRYFLEQSQRVITKLLSQDQTVTAAMVDIDHFKHINDTWGHDVGD 325

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  ++  +         V R GGEEF     G     A      LR+ I   ++ +  
Sbjct: 326 QALRAVAASVSGHARPQDLVARFGGEEFCLLVPGLDAANATSYFETLRERISALRVRVGE 385

Query: 213 GPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257
             ++ +T+S G+       + +  ++  AD+ LY+AK  GRN+V  
Sbjct: 386 -ETLSMTVSIGVCIASESDQSLHYLLNEADKYLYLAKAGGRNQVRL 430


>gi|262402293|ref|ZP_06078854.1| GGDEF domain protein [Vibrio sp. RC586]
 gi|262351075|gb|EEZ00208.1| GGDEF domain protein [Vibrio sp. RC586]
          Length = 352

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 69/264 (26%), Positives = 113/264 (42%), Gaps = 30/264 (11%)

Query: 11  IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70
           +W C       F P  F I+ S  F+ F  + IF+    +   G   +   +  ++    
Sbjct: 98  VWSC-------FVPILFYIFTSARFA-FTTSAIFL----ILQSGTVYWQSHDEPVISW-- 143

Query: 71  LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSY 125
               S+ + L   YI   ++  ++    R     +  L+  D L+   N  +  +S   +
Sbjct: 144 ----SVLLHLCFAYIGIWVVAHVYEDNRRKIENSLLYLASRDPLTNAHNRLSLTTSFEHF 199

Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
                   L ++  D+DYFK IND +GH  GDKV+   +  L  V G    + R+GGEEF
Sbjct: 200 EKFSDQTSLCLLVIDLDYFKSINDQYGHDTGDKVLIDTTRLLTQVVGDNN-LYRIGGEEF 258

Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
                  S  +A  +   LR I+            I +TIS G+ E    + ++ ++  A
Sbjct: 259 CVTLFDQSLTQAERVCERLRAIVSQHLFAYGD-KRIQLTISIGVCEYQSGDQLNDLLKFA 317

Query: 241 DQALYVAKKSGRNRVVCFSDIENN 264
           D  LY AKK+GRN+V  F   ++ 
Sbjct: 318 DIELYRAKKAGRNQVRLFRHTQDK 341


>gi|289207541|ref|YP_003459607.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           K90mix]
 gi|288943172|gb|ADC70871.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           K90mix]
          Length = 667

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 9/176 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140
           + + E     +R+   +  D L+GLLN  AF   +         Y+   S+V  D+DYFK
Sbjct: 479 ADISEERELVDRLVHEASHDPLTGLLNRRAFEREMQRAMDNAREYSSVASLVLVDLDYFK 538

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            +ND  GH VGD+++  +   L  +  +   V R+GG+EFA  A  +  ++A IL   + 
Sbjct: 539 AVNDRHGHQVGDELLRRVGTILRQLTRSRDAVARIGGDEFAVVAFDTDAEQARILGQRIC 598

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
             + +  + + +   + I  S G+ +       +      AD+A Y AK  GR +V
Sbjct: 599 SALGDRPLQVEA-RDVTIGASVGVVQLGAGLAGVDAAFVAADRACYSAKSEGRGQV 653


>gi|146292513|ref|YP_001182937.1| diguanylate cyclase with PAS/PAC sensor [Shewanella putrefaciens
           CN-32]
 gi|145564203|gb|ABP75138.1| diguanylate cyclase [Shewanella putrefaciens CN-32]
          Length = 339

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 11/185 (5%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFF 134
           L  +    L +      ++ +L+  D L+GL N   F   L  Y E        LS+V  
Sbjct: 151 LFVMVMHDLTQHKEENQKLRKLAATDSLTGLANRRYFDEILQHYWEECTAKLRPLSVVII 210

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAA 193
           D+DYFK  ND FGH  GD+ +  ++  +  +         R GGEEFA      + + A 
Sbjct: 211 DVDYFKVFNDQFGHIQGDECLRKIAKVIADIVPLDIGLAARYGGEEFALILPNHNAKMAL 270

Query: 194 ILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKE--PISTIIYRADQALYVAKKS 250
            +A  +++ I   +         + ++ S GIA   + +      ++  AD ALY AK  
Sbjct: 271 TIAQKIQQGINALRFTEQGLRDYVSVSASQGIASEVNGQFRTSMAMLCAADTALYRAKAD 330

Query: 251 GRNRV 255
           GR+R+
Sbjct: 331 GRDRI 335


>gi|134096457|ref|YP_001101532.1| putative GGDEF family protein [Herminiimonas arsenicoxydans]
          Length = 328

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 83/187 (44%), Gaps = 26/187 (13%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISSLGS---------------YNEKLS------IV 132
           + +Y  +   S  D L+GLLN   F                          +      + 
Sbjct: 120 YRNYQSLLDYSERDSLTGLLNRKTFDEKFARMVNAKPADSAPHGNEERRHHTDVKSQWLA 179

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK++ND FGH  GD+V+  +++ L   F     V R GGEEF      ++  +A
Sbjct: 180 VIDIDHFKRVNDVFGHLYGDEVLILVANVLRASFRAQDRVFRFGGEEFVILLRSTTLADA 239

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
            ++    R+ IE+            IT+S G A   H+ P+ TI+  ADQALY AK  GR
Sbjct: 240 QMVFERFRENIEHYAFP----QVGKITVSIGFASIGHETPV-TILGHADQALYYAKDHGR 294

Query: 253 NRVVCFS 259
           N+V  + 
Sbjct: 295 NQVCYYD 301


>gi|86361180|ref|YP_473067.1| putative kinase/esterase protein [Rhizobium etli CFN 42]
 gi|86285282|gb|ABC94340.1| putative kinase/esterase protein [Rhizobium etli CFN 42]
          Length = 588

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 92/181 (50%), Gaps = 7/181 (3%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQIND 144
           + KEL  S       +  D L+GLLN  +F           + K++++  D+D+FK+IND
Sbjct: 144 LNKELERSRAEARFAADHDHLTGLLNRRSFDFALSELARQESVKVALLHIDVDHFKEIND 203

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            FGH VGD V++ +S+ L+       F  RLGG+EFA             + + +++ + 
Sbjct: 204 RFGHAVGDLVLSHVSNILLEAISAGDFAARLGGDEFAVVITEDECDRTIAVLDHIQRRL- 262

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264
            S + +    ++ +  S G+A        + ++ ++D ALY AK++GRNR   FSD   +
Sbjct: 263 GSPLPVGD-QTLIVRCSIGVASAMSA-DFARLLSQSDLALYHAKRNGRNRAEIFSDEMAS 320

Query: 265 T 265
           T
Sbjct: 321 T 321


>gi|125972653|ref|YP_001036563.1| metal dependent phosphohydrolase [Clostridium thermocellum ATCC
           27405]
 gi|256004739|ref|ZP_05429715.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Clostridium thermocellum DSM 2360]
 gi|125712878|gb|ABN51370.1| metal dependent phosphohydrolase [Clostridium thermocellum ATCC
           27405]
 gi|255991332|gb|EEU01438.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Clostridium thermocellum DSM 2360]
 gi|316941110|gb|ADU75144.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Clostridium thermocellum DSM 1313]
          Length = 505

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 108/254 (42%), Gaps = 14/254 (5%)

Query: 21  SFSPHTFMIYFSIFFS-IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS 79
           S      +I  +  F  + +AT + +      +I        +  L+  L+L   +I ++
Sbjct: 60  SHIQSCIVILMAFRFGYVGLATAVVLVLAETIFIIEEYLVSFDKYLLLGLTLKFFTIFVT 119

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132
             +  ++        I   R+ +++  D L+G  N   F       +    + N  +S++
Sbjct: 120 SFIAVLTNR----QQIQKKRLERMAITDELTGAYNQRFFHMVLESELEKAKNNNGSVSLI 175

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID FK  ND +G   GD ++   +  L  +     ++ R GG+EFA     +     
Sbjct: 176 MIDIDNFKMYNDIYGRDFGDNILRTTATILSEILDEGSYLCRYGGDEFAVITTNTRLDNL 235

Query: 193 AILANDLRKIIENSQINISSGPSI-HITISAGIAERCH-KEPISTIIYRADQALYVAKKS 250
             +AN+LR+  E  +           +T+S G++E  +     + +IY+AD ALY AK  
Sbjct: 236 EDMANNLRREFERLKQKYYKHKLYEKVTLSIGLSEYPNMSRDKNELIYQADTALYHAKNL 295

Query: 251 GRNRVVCFSDIENN 264
           G+++V  + D    
Sbjct: 296 GKDKVHLYQDALMQ 309


>gi|326402744|ref|YP_004282825.1| putative signaling protein [Acidiphilium multivorum AIU301]
 gi|325049605|dbj|BAJ79943.1| putative signaling protein [Acidiphilium multivorum AIU301]
          Length = 1095

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 76/189 (40%), Gaps = 16/189 (8%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141
            + E   +  +I +L+ ID L+ L N       L            + +++F D+D FK 
Sbjct: 642 DITERREAEEQIYRLAHIDPLTELPNRRLLNERLREVLIEARRTGVQGALLFIDLDRFKT 701

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG------SSEQEAAIL 195
           IND  GH  GD  +   + +L         + R+GG+EF             +   AA +
Sbjct: 702 INDMLGHSAGDSALRQAAQRLRQAVRAADTIARVGGDEFVVLIADAGSTVADAADHAATI 761

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254
           A  +   +    I+I      H+  S G        + I T+I  AD A+Y AK +G   
Sbjct: 762 ARKMIDALTARPISIGE-REYHLGASIGFTMFPKPDDTIDTLIREADTAMYQAK-AGEAD 819

Query: 255 VVCFSDIEN 263
           VV F    +
Sbjct: 820 VVMFRQSMH 828


>gi|325678897|ref|ZP_08158495.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
 gi|324109401|gb|EGC03619.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
          Length = 337

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 9/225 (4%)

Query: 35  FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94
           FS+ +A +  I+  ++ Y G  P Y  E        L+  S  +  L+ Y +  +++ + 
Sbjct: 118 FSVSMALLSLISTGYVAYFG--PVYEREQKYAAIFWLINASSVMGFLIFY-TNFLIQTII 174

Query: 95  ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVG 151
            S  ++++++ +D L+GL N    I+ L   +E  S   +   DID FK+IND +GH  G
Sbjct: 175 SSEEKLNEIALVDRLTGLYNRHYMINCLDKMDEDYSSAYLAMADIDDFKKINDTYGHNAG 234

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
           D V+  +S+++         V R GGEEF      + EQ   ++  +LRK I + +++  
Sbjct: 235 DVVLEKVSEKMKSECR-GCTVSRWGGEEFLILIPPAVEQPVELI-ENLRKNIASEKVHYE 292

Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
               I +TI+AGI+ R  +  I   I   D  LY  K SG+N+VV
Sbjct: 293 D-KEISVTITAGISPRTDEHSIDQWIQTVDGKLYDGKHSGKNKVV 336


>gi|221133587|ref|ZP_03559892.1| GGDEF domain-containing protein [Glaciecola sp. HTCC2999]
          Length = 574

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 10/189 (5%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIV 132
           +L       I + L  S  ++ +L+ ID L+GL N   F  +L    ++        +++
Sbjct: 127 ILQSRKRNEIKQALVESNQQLKELAEIDQLTGLENRYMFDRNLKKMFQQHSVVSGGFALL 186

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             D+D+FK IND  GH VGD+++   + ++         V RLGG+EF   +   ++ E 
Sbjct: 187 LLDLDHFKTINDTLGHSVGDELLTAAALRIKNNIRQECKVYRLGGDEFGIISTLKNKHEI 246

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSG 251
             L   L   +  +     +  +I  T S GIA          ++   AD ALY+AK  G
Sbjct: 247 EQLVPRLMNTL--NTPYALTDMNIECTSSIGIAIYPDDASSAESLYKHADMALYIAKDEG 304

Query: 252 RNRVVCFSD 260
           R+R   +++
Sbjct: 305 RDRCQFYNE 313


>gi|113969374|ref|YP_733167.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. MR-4]
 gi|114046601|ref|YP_737151.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. MR-7]
 gi|113884058|gb|ABI38110.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. MR-4]
 gi|113888043|gb|ABI42094.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. MR-7]
          Length = 684

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 11/189 (5%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139
             IL +   + +++ +++  D L+GL N +  + ++         +    +++F D+D F
Sbjct: 232 NQILIQFSQTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRSRVHKSSFALMFIDLDRF 291

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND 198
           K IND+ GH +GD+ +A ++  L  V G    V RLGG+EF   A    S  +AA   + 
Sbjct: 292 KNINDSLGHALGDQFLARIARILERVVGDKGSVSRLGGDEFVILADSVHSPDQAADFVDK 351

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           L  +++ +     +  +IH   S GI+           +I  AD A+Y AK +G N+   
Sbjct: 352 L--LVQLNVPIQLNEHAIHPAASIGISIYPEDGNSAEDLIRHADIAMYSAKAAGSNQWAF 409

Query: 258 FSDIENNTC 266
           F        
Sbjct: 410 FKQQMTERA 418


>gi|330940946|gb|EGH43887.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 972

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 83/184 (45%), Gaps = 12/184 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144
           E + + N+++ L+  D L+ L N           IS   S  + +S++F D+D FK +ND
Sbjct: 521 ERYDAKNKLTYLAENDSLTRLPNRWFLSNYLREIISRTTSAPDAVSVIFIDLDRFKAVND 580

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS--SEQEAAILANDLRKI 202
             GH VGD+++     +L         V RLGG+EF+     S  SE     LA  +   
Sbjct: 581 TMGHSVGDQLLIQAGRRLRDCIDENSVVARLGGDEFSIVVTHSVYSESLIKSLATQVVDA 640

Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +   +     G  I ++ S GIA           I+  AD A+Y AKKSGRN    +   
Sbjct: 641 L--GKPFNLGGQDIFVSASVGIANYPFDGRDTGVILKNADTAMYHAKKSGRNNFKFYDAR 698

Query: 262 ENNT 265
            N +
Sbjct: 699 MNES 702


>gi|329925320|ref|ZP_08280261.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
 gi|328939928|gb|EGG36263.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
          Length = 539

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 87/197 (44%), Gaps = 25/197 (12%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141
            + +       + Q++  D L+ + N S F+              E L+ + FDID+FK+
Sbjct: 345 DVTDKARLQEELRQMAYYDGLTRIYNRSHFMKLSYALLNQAVRNREPLAFLLFDIDHFKR 404

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201
           IND +GH +GD+ +  + +             R GGEEFA A  G S  EA   A  +R 
Sbjct: 405 INDVYGHDIGDQALQHIVELTRKTLRAEDLFARYGGEEFAVAMPGHSTSEATAAAERIRA 464

Query: 202 IIENSQINISSGPSIHITISAGIA---ERCHKEPIST-------------IIYRADQALY 245
            +    +    GP + IT S G+A      H   +               ++ +AD++LY
Sbjct: 465 KLLAQPMTTPQGP-LMITASFGVAAVKTSSHNGRVDAEAEEAWWDTELKKVLKQADRSLY 523

Query: 246 VAKKSGRNRVVCFSDIE 262
            AK+SGRN +   SD E
Sbjct: 524 EAKRSGRNTIRV-SDEE 539


>gi|322434247|ref|YP_004216459.1| diguanylate cyclase [Acidobacterium sp. MP5ACTX9]
 gi|321161974|gb|ADW67679.1| diguanylate cyclase [Acidobacterium sp. MP5ACTX9]
          Length = 394

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 110/248 (44%), Gaps = 26/248 (10%)

Query: 30  YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89
           +F+I    F A +    +I +    +T  +  +   +     + +++ ++    +++ + 
Sbjct: 151 WFNIVILAFFAVLNLARSIGMAVGTVTGTFAEQVATLAYGIYIAVALGLAFGFFWMTTAT 210

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           L         +  ++  D L+ L N  AF       +    S     S++  D+D+FK+I
Sbjct: 211 LS------AALEHIASTDPLTRLYNRRAFRYWCDKEVKRSQSRGRLFSVLMIDLDHFKKI 264

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH  GD  +    +++         +GR GGEEF     G+S   A ++A+ LR  
Sbjct: 265 NDRFGHLAGDGALCAAVEKMQDSIRGIDILGRWGGEEFILLLPGASPDSALVIADRLRLN 324

Query: 203 IENSQI----------NISSGPS--IHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249
           +    +           I   P+  + +T+S G+       + + +++ RAD+ LY AK 
Sbjct: 325 VAKIMVGATGELHRLEEILGDPNDMMRVTVSLGVTTYRGKGDTVESMLKRADEGLYEAKA 384

Query: 250 SGRNRVVC 257
           +GRNR+V 
Sbjct: 385 TGRNRIVA 392


>gi|262044623|ref|ZP_06017678.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038024|gb|EEW39240.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 443

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/253 (28%), Positives = 113/253 (44%), Gaps = 17/253 (6%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE 67
            +++W      L S S    + +FS  F  F +  +F     L   G       +    E
Sbjct: 201 LMAVWFITLILLISLSKLRNIFWFSGAF--FCSAYLFTLFQLLSTAGELDQTWYQARFFE 258

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125
            L  + + I + L+  +I   + +E    Y    Q S  D L+ L N S F  +L     
Sbjct: 259 TLCTLFL-ILVLLVDVFI---LYRESNHKYVHSYQNSIRDPLTRLYNRSFFYDTLNQQLA 314

Query: 126 ----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                  LS++  D+D+FK+IND++GH  GDKVI F +  L           R+GGEEFA
Sbjct: 315 KVNAQHPLSVLISDLDHFKRINDSYGHVAGDKVIQFAASVLESHSRVDDAAARIGGEEFA 374

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRA 240
              + + E+EA  +A  +R  +   + ++       +TIS G+     +       + RA
Sbjct: 375 LLLVNTGEKEAQAIAERIRLAVSAGESHLPE----RMTISMGVYTTYDNSVTAEACVQRA 430

Query: 241 DQALYVAKKSGRN 253
           D+A+Y AK +GRN
Sbjct: 431 DEAMYEAKNNGRN 443


>gi|225390496|ref|ZP_03760220.1| hypothetical protein CLOSTASPAR_04251 [Clostridium asparagiforme
           DSM 15981]
 gi|225043425|gb|EEG53671.1| hypothetical protein CLOSTASPAR_04251 [Clostridium asparagiforme
           DSM 15981]
          Length = 1298

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 8/179 (4%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNF 146
            E  ++     + +R D L+GLLN +A  + + +Y    N+  +++  DID FK +ND +
Sbjct: 160 TEAKMARQSYWEQARRDSLTGLLNRTACKTLINAYQDWKNQICALMIVDIDNFKTLNDTW 219

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN 205
           GH  GD V+  ++ +L  +F     VGR+GG+EF       +   + A     + + I  
Sbjct: 220 GHLFGDTVLTEIARRLQALFRRSDVVGRIGGDEFIIFLRDLNDLNQPAHHGQRIVQSIGE 279

Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
            +  + +  ++ +T S GIA           ++ RAD ALY  K++G+NR   ++   +
Sbjct: 280 LRSALKN--AVEVTCSVGIAVSPRDGGSFEQLLERADCALYWGKRNGKNRYTVYAPHMS 336



 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 5/161 (3%)

Query: 87   GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEKLSIVFFDIDYFKQI 142
               L+ L  +  R      +D L+GL  ++ F      +L     +  +V  DI  FK I
Sbjct: 849  AKTLEALDDANRRAEYYRDVDSLTGLFTYNMFKELAQKALDQGVSRRVLVASDIKGFKYI 908

Query: 143  NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
            N   G+  GD ++   +D +V   G  +   R+ G+ F    +     +         + 
Sbjct: 909  NSTIGYTQGDNILRMFADMMVQSSGPEVINARVNGDVFLTLGVYEDRADFQEKLLQSNEN 968

Query: 203  IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243
                Q  I  G +I +  S           I   + RA+ A
Sbjct: 969  FARLQNQIYDGINIRVR-SGVYFLDPDSREIDLAVDRANLA 1008


>gi|119945725|ref|YP_943405.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
 gi|119864329|gb|ABM03806.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
          Length = 703

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 20/203 (9%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKL----SIV 132
           LL+G +    + E   + + I  ++  D L+ L N +     L     ++++     +++
Sbjct: 248 LLVGIM--QDITEKKFNQSEIELMAFYDTLTMLPNRALLNDRLNLAIEHSKRFEKYGAVL 305

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-- 190
           F D+D FK +ND++GH  GD ++  ++ ++  V      V R GG+EF         +  
Sbjct: 306 FLDLDNFKILNDSYGHQAGDDLLVIVAQRIQSVIRKDDTVARFGGDEFVIVLNELDSEPV 365

Query: 191 EAAILANDLRKII-----ENSQINISS---GPSIHITISAGIAERCHKEPI-STIIYRAD 241
           +AAI A  L + I     +   I IS+        IT S GI     +  + S ++  AD
Sbjct: 366 KAAIKAQRLAQSICHSIKQKINIKISNMAADIDYFITASVGITIFYGQSKVPSELLQLAD 425

Query: 242 QALYVAKKSGRNRVVCFSDIENN 264
            ALY AKK+GR+    F  +   
Sbjct: 426 LALYQAKKNGRDDSAMFDPVMQE 448


>gi|126464567|ref|YP_001045680.1| diguanylate cyclase/phosphodiesterase [Rhodobacter sphaeroides ATCC
           17029]
 gi|126106378|gb|ABN78908.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 772

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 11/183 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           + L  S      L+  D L+G+ N + F   L             ++++  D+D FK +N
Sbjct: 332 RRLHQSEEEARYLAMHDPLAGIPNRTLFEDRLDQALKAERRGGPPVALLCLDLDRFKAVN 391

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKI 202
           D  GH  GD++I  ++ +L         V RLGG+EF    +G +S++      + L  +
Sbjct: 392 DTMGHQAGDELIRQMAARLRSHVRETDTVARLGGDEFGVILIGMASDETLGRYCSGLVHL 451

Query: 203 IENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +  +  ++  G  + I  S G             I+  AD ALY AK  GR R    +  
Sbjct: 452 LA-APCDLKCGQ-VQIGASIGAVRAASVDGGREAILRSADTALYRAKAEGRGRYCIATPE 509

Query: 262 ENN 264
            N+
Sbjct: 510 MND 512


>gi|103488206|ref|YP_617767.1| diguanylate cyclase/phosphodiesterase [Sphingopyxis alaskensis
           RB2256]
 gi|98978283|gb|ABF54434.1| diguanylate cyclase/phosphodiesterase [Sphingopyxis alaskensis
           RB2256]
          Length = 543

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 106/243 (43%), Gaps = 27/243 (11%)

Query: 37  IFIAT---VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSI 89
           +FI T   V+      L  IG  P   L   LV N++L+        L G+         
Sbjct: 30  LFIGTGGNVMQAVVRALIGIGGGPDRVLATALVLNIALI--------LFGWRRYNDLNRE 81

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           ++E   +  R   L+  D L+G LN  A        I+   +   ++++   D+D+FK +
Sbjct: 82  IRERTEAEQRARYLADTDPLTGFLNRRALLVKGQRMIAEAVAEKREVALFLLDLDHFKTV 141

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILANDLR 200
           ND  GH  GD+V+   ++++  V        RLGG+EF A      S+  +   LA +L 
Sbjct: 142 NDIHGHAAGDRVLQVAAERIAAVLPPNATKARLGGDEFVAMMAFDPSARGDIDALAAELV 201

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++N  ++      I I  S GIA        + T++ +AD A+Y  K  GRNR V F 
Sbjct: 202 TALDNRIMH--DAQQIRIGASLGIALASDGGVSMDTMVRQADIAMYHGKDEGRNRHVWFE 259

Query: 260 DIE 262
              
Sbjct: 260 QGM 262


>gi|325925051|ref|ZP_08186473.1| response regulator receiver modulated diguanylate cyclase
           [Xanthomonas perforans 91-118]
 gi|325544563|gb|EGD15924.1| response regulator receiver modulated diguanylate cyclase
           [Xanthomonas perforans 91-118]
          Length = 414

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 9/168 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+GL N   F+             ++ ++    DID+FK IND +GH  GD
Sbjct: 248 LQDLATRDFLTGLPNRRYFLDQSQRVIPKLLLQDQTVTAAMVDIDHFKHINDTWGHEAGD 307

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  ++  +         V R GGEEF     G     A      LR+ I   ++ +  
Sbjct: 308 QALRAVAASVSGHARPQDLVARFGGEEFCLLVPGLDAANATSYFETLRERISALRVRVGD 367

Query: 213 GPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++ +T+S G+       + +  ++  AD+ LY+AK  GRN+V   S
Sbjct: 368 -ETLSMTVSIGVCTASESDQSLHYLLNEADKHLYLAKAGGRNQVRLAS 414


>gi|15620536|gb|AAL03920.1|U30252_8 unknown [Synechococcus elongatus PCC 7942]
          Length = 635

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 11/168 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQIN 143
           E   +  ++  L+  D L+ L N + F+  L +        +    +++F D D FK +N
Sbjct: 186 ERQQAQAQLWHLAHFDTLTQLPNRAYFVEQLHAWFNRYKADHQYPFAVLFLDCDRFKIVN 245

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GD ++  ++ +L     +P+   RLGG+EF              LA  L ++I
Sbjct: 246 DSLGHSAGDVLLTQVAQRLQSCIASPVIFARLGGDEFGVLVPAQDPGYPQDLAEQLHELI 305

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250
                    G  I+I +S GI+    + +    ++  AD A+Y AK++
Sbjct: 306 --VHPFEIQGQRIYIGVSIGISFVSAQIDAAEELLRSADTAMYAAKRN 351


>gi|113971105|ref|YP_734898.1| diguanylate cyclase [Shewanella sp. MR-4]
 gi|113885789|gb|ABI39841.1| diguanylate cyclase [Shewanella sp. MR-4]
          Length = 575

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/219 (27%), Positives = 103/219 (47%), Gaps = 15/219 (6%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLS 110
            YI        EY  +     +++     L +  + G++ K  F+      +++R+D L+
Sbjct: 347 LYIAQQTVKEREYTNMLMFITILVGGLFFLAILLVVGNLQKRRFM------RMARMDALT 400

Query: 111 GLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           G+LN  A             +      ++ FD+DYFK+IND++GH  GD  +  + + L 
Sbjct: 401 GVLNRGAGQDLGENLFVQAAARGGDFCVILFDLDYFKRINDSYGHGTGDWALKKVVEALK 460

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                     R+GGEEFA     ++E +   +A   R  IE    ++S G    IT S G
Sbjct: 461 PHVRNGDVFARIGGEEFALFLPYANESKGMEVAEQCRSRIEAIDTHLS-GHKFTITASFG 519

Query: 224 IAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           ++    ++  +  +++RAD ALY AK +GRN V C+ D 
Sbjct: 520 VSGMTKEDLSLDPLLHRADMALYAAKSNGRNSVFCYEDA 558


>gi|332533660|ref|ZP_08409520.1| response regulator/GGDEF domain protein [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036941|gb|EGI73401.1| response regulator/GGDEF domain protein [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 574

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 18/186 (9%)

Query: 91  KELFISYNRIS-------QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
           K+ F +  R+         ++  D L+GL N   F   L             ++++  D+
Sbjct: 122 KKRFEAEQRMHNSYLAVKHMAERDQLTGLSNRYHFEEILKVMIANNKRAKNCVALLALDL 181

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAIL 195
           D FK IND  GH VGD+++    +++           RLGG+EFA    G  +  +  ++
Sbjct: 182 DNFKNINDTLGHSVGDEILIQTVERIHSCLRQNEGFARLGGDEFAVIIGGICNINQIGMI 241

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNR 254
           AN +  + E S+  +  G +++ ++S G A   +    S  ++  AD A+Y +K+SG++R
Sbjct: 242 ANRI--LAEVSKPFLHEGRTLNCSVSIGSALYPNDATESHELLKCADIAMYRSKQSGKSR 299

Query: 255 VVCFSD 260
           +  + +
Sbjct: 300 ISFYKE 305


>gi|319761288|ref|YP_004125225.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|317115849|gb|ADU98337.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
          Length = 698

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 84/195 (43%), Gaps = 18/195 (9%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDID 137
           +    +     +  R   L+  D L+ L N    +  L           ++ +++F D+D
Sbjct: 249 VVVRDITARKQAQERARFLALHDPLTQLPNRRHLMLQLARTVATAQERRKRSAVLFVDLD 308

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-----SSEQEA 192
           +FK +N++ GH  GD+++  ++ +L        FV  +GG++F     G     ++   A
Sbjct: 309 HFKTVNESLGHEAGDQLLCEVARRLQEGVKATDFVAHVGGDQFVVLLSGLRGRAAAAAAA 368

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             L   +R +    +  +S  PS+ I++               ++ RAD A+  AK+SGR
Sbjct: 369 DALIERIRAVYTIGETQLSPSPSVGISV-----FPDDGYGPDELLRRADAAMQQAKESGR 423

Query: 253 NRVVCFS-DIENNTC 266
              + ++ D+E    
Sbjct: 424 GTRLFYTPDMEGQPA 438


>gi|298528664|ref|ZP_07016068.1| diguanylate cyclase with PAS/PAC sensor [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512316|gb|EFI36218.1| diguanylate cyclase with PAS/PAC sensor [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 305

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 11/169 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144
            L I    +  L   D L+G  N                 Y    SI+  DID FK IND
Sbjct: 136 RLAIKNEELETLYARDVLTGAYNRVKLDEIMDKELGRYERYGRLFSIILMDIDDFKDIND 195

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+V+  +S+ L         + R GGEEF      +       LA +LR+++ 
Sbjct: 196 TLGHLAGDRVLYEMSNLLTANTRATDLLCRWGGEEFLLVCPETDSSGVRPLAENLRQMVA 255

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
             +    S     ITIS G A    ++   ++I RAD+A+Y++K  G+N
Sbjct: 256 GHEFECGS----RITISLGAATVRPEDTQDSMIARADKAMYLSKSQGKN 300


>gi|167463624|ref|ZP_02328713.1| hypothetical protein Plarl_13894 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 380

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 116/248 (46%), Gaps = 27/248 (10%)

Query: 17  KNLESFSPHTFMIYFSIFFSIFIATVIFIANI--FLFYIGLTPFYGLEYILVENLSLVII 74
            N E +S  + ++  +   S+ ++ ++   N+   +  +   P+    Y   EN  L   
Sbjct: 146 SNYEKYSVKSKIMEMTGSRSLMVSPILIADNVVGIIHVVHQNPY----YFSYENYKL--- 198

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSI 131
              +  L G+I  ++       +  + ++   D L+GL         + +  ++    ++
Sbjct: 199 ---LQTLSGHIGLAMAN--ATLHAEVQRMVITDNLTGLYVRHYLDGQIKTMQKQDAIGTL 253

Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
           +  DID FKQIND FGH VGD ++  +SD +  +        R GGEE A     +S+ E
Sbjct: 254 ILVDIDCFKQINDTFGHQVGDSILIQVSDIVRSMIREQDITARWGGEELAIYLPVTSKNE 313

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAK 248
              +A+++R  I           S  +T+S G+A+    +    + ++ Y+AD ALY AK
Sbjct: 314 GMQMADEIRTAIMQK-------TSPSVTVSCGVADWKSTDDKISVESLFYKADMALYEAK 366

Query: 249 KSGRNRVV 256
           +SG+NRVV
Sbjct: 367 RSGKNRVV 374


>gi|119468870|ref|ZP_01611895.1| hypothetical protein ATW7_03882 [Alteromonadales bacterium TW-7]
 gi|119447522|gb|EAW28789.1| hypothetical protein ATW7_03882 [Alteromonadales bacterium TW-7]
          Length = 302

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 59/217 (27%), Positives = 107/217 (49%), Gaps = 9/217 (4%)

Query: 46  ANIFLFYIGLTPFYGLEYILV-ENLSLVIISITISL---LLGYISGSILKELFISYNRIS 101
             + L+ +G+T     E ++  + ++L I  + IS+   +  Y     +  +   +NR++
Sbjct: 86  IGLMLWIVGMTADVLDELVVQPQWVTLYIKDLCISVGVVITAYGLFKTMLFMQKMHNRLA 145

Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160
           Q   +D L+ + N   F   + +  +E  +++  DID+FK IND FGH  GDKV+   + 
Sbjct: 146 QEFIVDDLTQVYNRRCFYEYVENETDESYAVIIIDIDHFKSINDTFGHDKGDKVLKAFAS 205

Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220
           ++  +F       R+GGEEFA      + ++    A  +       ++       ++ + 
Sbjct: 206 KIDALFEDGNIFARIGGEEFAGYLPNCTLEQMQAFAESVLASARTIEVT----DELYTSA 261

Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           S G+A+R   E   +++ RADQALY AK SGRN+   
Sbjct: 262 SIGVAKRFKNESFDSVMKRADQALYKAKNSGRNQFEI 298


>gi|56420376|ref|YP_147694.1| hypothetical protein GK1841 [Geobacillus kaustophilus HTA426]
 gi|56380218|dbj|BAD76126.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 608

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/255 (27%), Positives = 116/255 (45%), Gaps = 21/255 (8%)

Query: 26  TFMIYFSIFFSIFIATVIFIANIF--LFYIGLTPFYGLEYILVENLSLVI---------I 74
           + ++YF I  S+     +F+  ++   F  G+     + Y +   LSLV+          
Sbjct: 146 SLLVYFLINISLIFMFFVFLERVYKGAFNFGVLFEAMVSYCVTLILSLVLAILLDKERYF 205

Query: 75  SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NE 127
            + +  +L  I   + ++  + Y  +S  +  D L+GL NH  F  +L           +
Sbjct: 206 GLFLFTVLVIILSVVFRKFIVLYELVSNRANKDHLTGLYNHGFFKEALKEQFSDCKLLKQ 265

Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF-VGRLGGEEFAAAALG 186
            L++ F D+D FK+ ND  GH  GD+++ F    L    G   F V R GGEEFA     
Sbjct: 266 PLTLAFLDLDDFKKYNDRNGHLQGDRLLTFFGKLLQKAVGGTNFTVARYGGEEFAILMPN 325

Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHK-EPISTIIYRADQAL 244
           +++++A    N LRK + ++            ++ S GIAE          +I+RADQAL
Sbjct: 326 TTKEDAYAFLNRLRKEVNDTYFEGVEHIPYRCLSFSCGIAEMEKDMHESDELIHRADQAL 385

Query: 245 YVAKKSGRNRVVCFS 259
           Y AK  G+N V  + 
Sbjct: 386 YYAKAQGKNNVQLYD 400


>gi|117921386|ref|YP_870578.1| diguanylate cyclase [Shewanella sp. ANA-3]
 gi|117613718|gb|ABK49172.1| diguanylate cyclase [Shewanella sp. ANA-3]
          Length = 575

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 104/219 (47%), Gaps = 15/219 (6%)

Query: 51  FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLS 110
            YI        EY  +     +++     L +  + G++ K  F+      +++R+D L+
Sbjct: 347 LYIAQQTVKEREYTNMLMFITILVGGLFFLAILLVVGNLQKRRFM------RMARMDALT 400

Query: 111 GLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
           G+LN  A             +      ++ FD+D+FK+IND++GH  GD  +  + + L 
Sbjct: 401 GVLNRGAGQDLGENLFVQAAARGGDYCVILFDLDHFKRINDSYGHGTGDWALKKVVEVLK 460

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
                     R+GGEEFA     ++E +   +A   R+ +E    ++S G    IT S G
Sbjct: 461 PHVRNGDVFARIGGEEFALFLPYANESKGMEVAEQCRRRLEAIDTHLS-GHKFTITASFG 519

Query: 224 IAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           ++    ++  +  +++RAD ALY AK +GRN V C+ D 
Sbjct: 520 VSGMTKEDLSLDPLLHRADMALYAAKSNGRNSVFCYEDA 558


>gi|269966741|ref|ZP_06180818.1| hypothetical protein VMC_22480 [Vibrio alginolyticus 40B]
 gi|269828664|gb|EEZ82921.1| hypothetical protein VMC_22480 [Vibrio alginolyticus 40B]
          Length = 533

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 105/236 (44%), Gaps = 13/236 (5%)

Query: 34  FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVII--SITISLLLGYISGSILK 91
           F  + I+  IF   +FL  I   P   L   L   +SL++   SI + L++ + + SIL 
Sbjct: 37  FLLLLISCFIFAYAVFLHAIMQKPIASL---LETGVSLILFGGSIFVVLVIKWSNDSIL- 92

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148
           EL     R  + +  D L+GL N      S+       +  S++ FD+  FKQ+ND  GH
Sbjct: 93  ELHTVAEREKRNAVHDALTGLPNRKYCFESIEGRIQSRDPFSVILFDVVNFKQVNDAMGH 152

Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
             GD+++  +  +L         + R+GG+EF      + E+    L  +L   +  S+ 
Sbjct: 153 FCGDQLLIQIGQRLQGKLKGNDQIFRVGGDEFVILTSSACEETGKKLIEELDSAM--SER 210

Query: 209 NISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263
                  +   +  GI+   +       +I  AD A+Y AK++G N    +++  N
Sbjct: 211 FHLDEFQVSCRVVFGISTYPYDALTNDLLIKHADIAMYHAKRNG-NLFAFYNEDMN 265


>gi|126441543|ref|YP_001058200.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 668]
 gi|126221036|gb|ABN84542.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 668]
          Length = 772

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVII-SITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119
           +Y    N+ L++   IT+++L  + ++  ++ +L      ++QL+  D L+GL N  A +
Sbjct: 278 DYHHTRNVYLLMTGFITLAMLAFFGVATGLIGKLLGREREMTQLAEFDLLTGLANRYATL 337

Query: 120 SSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            SL       S   +L+I+F D+D FK +ND  GH  GD V+   + +L         + 
Sbjct: 338 RSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVANEGALA 397

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EF     G + E+ A  LA  + ++    +     G S  +  S GIA      E
Sbjct: 398 RIGGDEFVVVVKGENVERRAERLAEAIVRMFA--EPFDVRGSSFVLHASIGIALHSVENE 455

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +AD A+Y AK +G+N    ++
Sbjct: 456 SEIDLLKKADLAMYSAKDAGKNCYQFYA 483


>gi|260177192|gb|ACX33916.1| putative response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [uncultured prokaryote AT3]
          Length = 533

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 92/216 (42%), Gaps = 16/216 (7%)

Query: 50  LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCL 109
           L +  L+ F      ++  L+L +  + + L   YI+  + +     + R   L+  D L
Sbjct: 310 LRWADLSGFSMRAVAVISLLALTL--VMLYLRRHYIAMQVAE---REHARAEFLAMHDPL 364

Query: 110 SGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162
           + L N       +              ++   D+DYFK+IND +GH  GD ++  ++ ++
Sbjct: 365 TDLPNRHLLADRVRQALLRWQRTGAMFAMFLIDLDYFKEINDTYGHEGGDFLLKTVAHRI 424

Query: 163 VVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
                    V R GG+EF         E +A  +   L  ++  S+       ++ +T S
Sbjct: 425 SNTLRATDTVARYGGDEFIVLVADVLGESDARAVGEKLLSVV--SEAVAYGDKNLRVTCS 482

Query: 222 AGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            G+A          T+ ++AD A+Y  KK GRN V+
Sbjct: 483 LGVALCPRDGVDFETLCHQADHAMYQVKKDGRNGVI 518


>gi|317128931|ref|YP_004095213.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473879|gb|ADU30482.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus cellulosilyticus DSM 2522]
          Length = 1071

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 10/186 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDID 137
           ++   + E  +    I QL   D L+GL N     S L S          +L+++  D+D
Sbjct: 132 VNYRDITERKLYEEEIHQLVYHDNLTGLPNQYMLDSFLESEIYKAKYECTRLALLIIDLD 191

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK IND+ GH +GD+++  +  +LV +      + R GG+EF        + +   + +
Sbjct: 192 RFKVINDSIGHTIGDQLLKEVGKRLVSIVSKSDLLVRKGGDEFVIVLPSIKKDQVLKVVD 251

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII-YRADQALYVAKKSGRNRVV 256
           ++  ++  S   I S   I  + S G++          ++   A+ A+Y AKKSG  +  
Sbjct: 252 NIINLL-TSPFKIKS-YDIFTSPSIGVSIFPEDGKTKDLLYKHAEFAMYQAKKSGNGQYH 309

Query: 257 CFSDIE 262
            FS  E
Sbjct: 310 FFSSAE 315


>gi|261251711|ref|ZP_05944285.1| hypothetical protein VIA_001732 [Vibrio orientalis CIP 102891]
 gi|260938584|gb|EEX94572.1| hypothetical protein VIA_001732 [Vibrio orientalis CIP 102891]
          Length = 826

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 10/179 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNH----SAFISSL---GSYNEKLSIVFFDIDYFKQIND 144
           EL         L+  D L+ L N           +    S N    +++ D+D FK IND
Sbjct: 378 ELQEEKKNFDFLAHHDPLTLLANRLLATKKLDEQIAFSQSNNSPFLLLYLDVDEFKTIND 437

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           + GH  GD ++  +S+ L  + G   FV R+GG+EF         +E   +A+ + K + 
Sbjct: 438 SLGHASGDNLLVSISEILTKLIGDTGFVARMGGDEFMIVLSDMDSEEGERVADQINKALR 497

Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
                      I ++ S GI +   H E   T++  AD A+Y AK++GR++   ++D  
Sbjct: 498 --MPYYIEDRMIFVSASIGICQFPIHGEDGETLVRNADTAMYHAKRNGRDQFRIYADQM 554


>gi|258624539|ref|ZP_05719481.1| extracellular solute-binding protein, family 3/GGDEF domain protein
           [Vibrio mimicus VM603]
 gi|258583192|gb|EEW07999.1| extracellular solute-binding protein, family 3/GGDEF domain protein
           [Vibrio mimicus VM603]
          Length = 463

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 105/204 (51%), Gaps = 7/204 (3%)

Query: 57  PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116
           P Y +  ++   L +VI+    +L L        ++L  + ++++ LS+ D L+G+ N  
Sbjct: 260 PRYLIPGLVTGTLMVVIL---YALQLRRTVRLRTRQLEEANHKLTLLSQTDSLTGIHNRH 316

Query: 117 AFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            F + L     +++ L+++ FDID FK+IND +GH  GD  I  ++  +       M   
Sbjct: 317 YFFNQLTKERDHSKSLTLMVFDIDDFKRINDTYGHGAGDSAICLITACVRSALEPDMEFA 376

Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233
           R+GGEEFA    G + + +  LA  + + I   ++ ISS   + +TIS G A   H    
Sbjct: 377 RIGGEEFAILVHGKTAEASQQLAELICQRIAEKELMISSNTFVTLTISLGCAFY-HSPTE 435

Query: 234 STIIYRADQALYVAKKSGRNRVVC 257
           S  ++ AD  +Y AK  G+N+VV 
Sbjct: 436 SPTLHMADSLMYEAKGKGKNQVVF 459


>gi|312958595|ref|ZP_07773115.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC and GAF sensor [Pseudomonas
           fluorescens WH6]
 gi|311287138|gb|EFQ65699.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC and GAF sensor [Pseudomonas
           fluorescens WH6]
          Length = 897

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + +  ++  RI +L+  D L+ L N  AFI +L        +  +S++  DID FK+IN
Sbjct: 454 DITQTKLAQQRIERLAYTDNLTNLGNRPAFIRNLDERFARDSDSPISLLLVDIDNFKRIN 513

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++  L+ +L     T   + R    EFA     +  +    +A+ L   +
Sbjct: 514 DSLGHQTGDKLLISLARRLRNSLSTGGSLARFASNEFAVLLDDTDLESGQQVASQLLATL 573

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I +T S G+A    H     T++  A  AL+ AK +G+++V  F++  
Sbjct: 574 DKPMF--VDNQLISVTGSVGLACAPLHGRDPQTLMRNAGLALHKAKANGKHQVQVFTEAL 631

Query: 263 NNTC 266
           N   
Sbjct: 632 NAEA 635


>gi|295098029|emb|CBK87119.1| diguanylate cyclase (GGDEF) domain [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 459

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 9/178 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           ++L+ELF   +R      +D L+ LLN           I        KLS +  D+D FK
Sbjct: 281 TLLRELFDEVSR--HEVGVDVLTRLLNRRFLPTIFKREILHATRAGTKLSTLLIDVDKFK 338

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           QIND +GH  GD+++  +S        T  +V R GG+EF       SE +A  +A  +R
Sbjct: 339 QINDTWGHNTGDEILRKVSGAFYDNVRTCDYVFRYGGDEFLIVLTEISEVDALRIAERIR 398

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           + +E  ++N  +G  I +++S G+A          +I  AD+ALY AK+ GRN V  +
Sbjct: 399 RRVEKIKVNSPTGDIIPLSLSIGVAMFNGHPDYERLIQAADEALYGAKRRGRNCVELW 456


>gi|159898911|ref|YP_001545158.1| TPR repeat-containing diguanylate cyclase and serine/threonine
           protein kinase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159891950|gb|ABX05030.1| diguanylate cyclase and serine/threonine protein kinase with TPR
           repeats [Herpetosiphon aurantiacus ATCC 23779]
          Length = 600

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 8/177 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEK----LSIVFFDIDYFK 140
             L ++     ++++ ++ D L+ +LN       +     + +      + + FDID+FK
Sbjct: 413 QQLADIQQINLQLAEWAKTDSLTEILNRRGLYEQIDLALQHQQTDAQGWAWIMFDIDFFK 472

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND++GH  GD+V+  ++ +  +V       GR GGEEF      +S QEA ++A  LR
Sbjct: 473 AINDSYGHDSGDEVLRGIAQRARLVLRHSDVFGRYGGEEFLVFLPHTSMQEAIVIAERLR 532

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             I N+   +    ++++TIS GIA     +    +   ADQALY +K +GRN    
Sbjct: 533 TAIANTP-YVVKQTAVNVTISLGIAWTEQVDDPERLTQLADQALYRSKAAGRNCYTI 588


>gi|301059424|ref|ZP_07200345.1| putative Response regulator PleD [delta proteobacterium NaphS2]
 gi|300446460|gb|EFK10304.1| putative Response regulator PleD [delta proteobacterium NaphS2]
          Length = 312

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/181 (30%), Positives = 83/181 (45%), Gaps = 14/181 (7%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141
           + K L  +Y +I  LS  D L+G  N +     L         Y   +S+V  DID+FK+
Sbjct: 127 LEKSLKDAYEKIRLLSITDKLTGCYNRTYMDEYLSREISRATRYLRPISLVMTDIDHFKR 186

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           IND++GH  GD ++      +         ++ R GGEEF      +  + A   A  LR
Sbjct: 187 INDDYGHQAGDLILKNFVGWIKESLRNDVDWIARYGGEEFLIVLPETDFESAMWSAERLR 246

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-----PISTIIYRADQALYVAKKSGRNRV 255
           K +  + +       I IT S G+            P  ++I +AD++LY AKK GRNR+
Sbjct: 247 KSVSEN-VTAYEDKDIRITASFGVVGFKPSAGNNTFPHESMIDKADKSLYQAKKEGRNRI 305

Query: 256 V 256
            
Sbjct: 306 R 306


>gi|152999891|ref|YP_001365572.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|304409483|ref|ZP_07391103.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|307303841|ref|ZP_07583594.1| diguanylate cyclase [Shewanella baltica BA175]
 gi|151364509|gb|ABS07509.1| diguanylate cyclase [Shewanella baltica OS185]
 gi|304352001|gb|EFM16399.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|306912739|gb|EFN43162.1| diguanylate cyclase [Shewanella baltica BA175]
          Length = 518

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           KE      +++ L   D L+ L N +A    +         +   L +   DID+FK IN
Sbjct: 347 KERLFEQQKLNLL---DSLTQLPNRAALEERMDLEYRNYQRHKSPLWVAVADIDHFKTIN 403

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+FGH  GDK +  ++  L        FV R GGEEF       +  + A L N +R+ +
Sbjct: 404 DSFGHSTGDKTLQVIAMALKNSLRDTEFVARYGGEEFVLLLPDVAPADIAQLLNRVREKV 463

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +N      +   I +T+S G A+    E I     RAD ALY AK   R+RVV 
Sbjct: 464 KNIPFKFKN-QRITVTVSIGAAQVMGSELIHETFERADAALYKAKHESRDRVVI 516


>gi|77457285|ref|YP_346790.1| response regulator receiver modulated diguanylate cyclase
           [Pseudomonas fluorescens Pf0-1]
 gi|77381288|gb|ABA72801.1| putative chemotaxis-related, two component system response
           regulator [Pseudomonas fluorescens Pf0-1]
          Length = 333

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 11/176 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           ++L  +   + +L   D L+GL N   F   L            +LS++  D+DYFK  N
Sbjct: 155 QQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRSLRDQSQLSLLMIDVDYFKSYN 214

Query: 144 DNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           D FGH  GD+ +  ++  +            R GGEEFA     +S   A ++A  LR+ 
Sbjct: 215 DTFGHVEGDEALRKVATAIREASARPSDLPARYGGEEFALVLPNTSPGGARLVAEKLRQT 274

Query: 203 IENSQINISSGPSI-HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255
           +   +I  ++      +TIS G+A            +I  AD+ LY+AK +GRN+V
Sbjct: 275 VAALKIPHNAPAEGSSLTISIGLATMVPESGSDCRLLISAADRGLYLAKNNGRNQV 330


>gi|262173404|ref|ZP_06041081.1| sensory box/GGDEF family protein [Vibrio mimicus MB-451]
 gi|261890762|gb|EEY36749.1| sensory box/GGDEF family protein [Vibrio mimicus MB-451]
          Length = 308

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 12/196 (6%)

Query: 73  IISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124
           I+  T   ++G I   + + ++     ++ QL+  D L+ L N            +    
Sbjct: 112 ILQKTTGEVIGLIGVSTDITDIVELREQLYQLANTDALTQLCNRRKLWADFRSAFARAKH 171

Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
             + LS +  DID FK IND+FGH  GD+V+ FL+     +       GR+GGEEF    
Sbjct: 172 SKQPLSCISIDIDNFKLINDHFGHDKGDEVLCFLAQLFYELTSEHHICGRVGGEEFIIVL 231

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQA 243
             +    A  LA  +R+               H+ + AG+A  R      + I  R+DQA
Sbjct: 232 EDTPVATAFALAEQIRQRFSQHSFFEQKE---HVYLCAGVATMRLSDHDFTDIYRRSDQA 288

Query: 244 LYVAKKSGRNRVVCFS 259
           LY AK+SGRNR   ++
Sbjct: 289 LYQAKRSGRNRCCIYN 304


>gi|254423463|ref|ZP_05037181.1| GGDEF domain protein [Synechococcus sp. PCC 7335]
 gi|196190952|gb|EDX85916.1| GGDEF domain protein [Synechococcus sp. PCC 7335]
          Length = 690

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 17/186 (9%)

Query: 74  ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------- 125
           +S ++  LL   S  + +E    +N     +  D L+GL N S F+  L           
Sbjct: 185 LSTSLHRLLKVQSALLKREATSRHN-----ALHDPLTGLPNRSYFLQRLEQSVQLTQRNS 239

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           N + +++F D+D FK +ND  GH VGD+++  +++++  +      V RLGG+EFA    
Sbjct: 240 NHQYAVLFIDLDSFKPVNDTLGHEVGDQLLTHVANRIKRLLRKSDLVARLGGDEFAVLLD 299

Query: 186 GSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQA 243
             + + EA      ++  +E  Q    +   + I+ S GIA      +   +++  AD A
Sbjct: 300 DIAGKNEAITAVRRIQWHLE--QPFTVANRQLSISASIGIALSQLGYQQAESVLRDADTA 357

Query: 244 LYVAKK 249
           +Y AK+
Sbjct: 358 MYQAKR 363


>gi|168754353|ref|ZP_02779360.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4401]
 gi|168799156|ref|ZP_02824163.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC508]
 gi|187775846|ref|ZP_02798727.2| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4196]
 gi|188024578|ref|ZP_02772373.2| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4113]
 gi|189010289|ref|ZP_02806055.2| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4076]
 gi|189402984|ref|ZP_02792537.2| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4486]
 gi|208808066|ref|ZP_03250403.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4206]
 gi|208816404|ref|ZP_03257583.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4045]
 gi|208822596|ref|ZP_03262915.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4042]
 gi|209400191|ref|YP_002269752.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4115]
 gi|187770376|gb|EDU34220.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4196]
 gi|188018208|gb|EDU56330.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4113]
 gi|189001295|gb|EDU70281.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4076]
 gi|189358305|gb|EDU76724.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4401]
 gi|189363103|gb|EDU81522.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4486]
 gi|189378245|gb|EDU96661.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC508]
 gi|208727867|gb|EDZ77468.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4206]
 gi|208733052|gb|EDZ81740.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4045]
 gi|208738081|gb|EDZ85764.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4042]
 gi|209161591|gb|ACI39024.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. EC4115]
 gi|320192470|gb|EFW67112.1| Sensory box/GGDEF domain protein [Escherichia coli O157:H7 str.
           EC1212]
 gi|320637456|gb|EFX07256.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. G5101]
 gi|320648475|gb|EFX17130.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H- str. H 2687]
 gi|320664405|gb|EFX31556.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326338525|gb|EGD62352.1| Sensory box/GGDEF domain protein [Escherichia coli O157:H7 str.
           1125]
 gi|326345575|gb|EGD69315.1| Sensory box/GGDEF domain protein [Escherichia coli O157:H7 str.
           1044]
          Length = 476

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 22/258 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LV 66
            + +WL        F+   + I+  +    F A +  I+ +F+    ++ +Y    I +V
Sbjct: 223 MIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVV 282

Query: 67  ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122
             L++++I +            I   L ++ N    ++  D L+ + N + F + L    
Sbjct: 283 SKLTVMVIFMC----------HIFSALRVTKN----IAHRDPLTNIFNRNYFFNELTVQS 328

Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
             +      ++  DID+FK++ND +GHPVGD+VI  + + +         + R+GGEEF 
Sbjct: 329 ASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFG 388

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEPISTIIYR 239
                   + A  LA  +R+ +E    +         +TIS G +  + +    + I   
Sbjct: 389 VLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQGNALNPNEIYRL 448

Query: 240 ADQALYVAKKSGRNRVVC 257
           AD ALY AK++GRN+VV 
Sbjct: 449 ADNALYEAKETGRNKVVV 466


>gi|187926137|ref|YP_001892482.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12J]
 gi|241665625|ref|YP_002983984.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12D]
 gi|187727891|gb|ACD29055.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12J]
 gi|240867652|gb|ACS65312.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12D]
          Length = 1183

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 22/187 (11%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQ 141
            + E  ++  R++Q + ID L+GL N +                  +  +   +ID FK 
Sbjct: 742 DVTEQEMTRTRLAQHATIDSLTGLPNRTLLADRVQQSVEMAARQRSRFYVALVNIDRFKV 801

Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA----AILAN 197
           +ND+ GH +GD+V+  ++++L     T   V R GG+ FA     +  +       + A 
Sbjct: 802 VNDSLGHLLGDEVLRRVAERLRDAADTVDTVARFGGDVFALVISHAGSRGVDFGFDLFAE 861

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            +R            G  + +T S G+AE   H     ++I  A+ A+Y AK++GRNR+ 
Sbjct: 862 PVR----------VEGHEVFVTASIGVAEYPAHGADADSLIRHAEMAMYYAKQNGRNRLE 911

Query: 257 CFSDIEN 263
            F+   +
Sbjct: 912 FFAPEMD 918


>gi|226942211|ref|YP_002797284.1| GGDEF domain-containing protein [Azotobacter vinelandii DJ]
 gi|226717138|gb|ACO76309.1| GGDEF domain protein [Azotobacter vinelandii DJ]
          Length = 464

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 9/175 (5%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142
           L  LF   N +   S  D L+ +LN           ++         +++  DID FK I
Sbjct: 286 LDNLFEQANVLE--SGRDVLTHMLNRKFLPVILAKEVAYARQNERSFAVLAVDIDRFKHI 343

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND FGH  GD V+  L+  L        +V R+GGEEF    +  ++  A  +A  LR+ 
Sbjct: 344 NDEFGHEAGDVVLQQLASLLSNHCRGGDYVFRMGGEEFLVLLVDVTQAHALGVAEKLRQQ 403

Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
               +  +     + +T+S G+A          ++ +AD+ALY AK  GRN+VV 
Sbjct: 404 AAQERFRLPGEQDLQLTVSIGVALHDGHPDYQHLLRQADRALYEAKHGGRNQVVL 458


>gi|188581693|ref|YP_001925138.1| diguanylate cyclase [Methylobacterium populi BJ001]
 gi|179345191|gb|ACB80603.1| diguanylate cyclase [Methylobacterium populi BJ001]
          Length = 403

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/256 (25%), Positives = 111/256 (43%), Gaps = 18/256 (7%)

Query: 9   LSIWLCHEKNLESFSPHTFMIY-FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE 67
           L IW    + L S  P   ++  +++ + I +  + F   +       +P++ +      
Sbjct: 136 LMIWRGRGEPLVSRYPALVLLASYAVLYWIRV-PLAFALPLPASVAIASPWFAI------ 188

Query: 68  NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE 127
              L       S+ + ++  ++ KE      R++  +  D L+G+ N  A ++    +  
Sbjct: 189 ---LCFTGTLYSVAIAFVFMALTKERAEREQRLA--AETDALTGIANRRALVAGAERHLA 243

Query: 128 KLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
                   FD+D FK IND +GH VGD V+A        +       GR+GGEEFA    
Sbjct: 244 VAPAALLLFDLDRFKAINDRYGHSVGDAVLAAFCTIAAPLLPPEAVFGRMGGEEFACLLP 303

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQAL 244
              E+ AA +   +R  +     +    P + + +S G+A        +  ++ RAD AL
Sbjct: 304 RLDERAAARVGERVRAAVAG--FDHPDYPDLAMRVSVGVAAESQIGGSLDYLLRRADDAL 361

Query: 245 YVAKKSGRNRVVCFSD 260
           Y AK +GR+RVV   D
Sbjct: 362 YRAKHAGRDRVVTAGD 377


>gi|118480340|ref|YP_897491.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus thuringiensis str. Al Hakam]
 gi|118419565|gb|ABK87984.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus thuringiensis str. Al Hakam]
          Length = 909

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 97/214 (45%), Gaps = 11/214 (5%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114
           +  ++    I   +++ V I +   +   Y+    + E      +I+ L+  D L+ L N
Sbjct: 430 IRAYHKNRDIYYLHVTAVPIFLKDHISGVYLMIKDITESKQQQEQINFLAYRDTLTELAN 489

Query: 115 HSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167
             AF   +           +  +++F D+D FK IND  GH VGD ++  ++ +L  +  
Sbjct: 490 RRAFHQYVEQAIARSKISKKPFAVMFLDLDRFKVINDTLGHRVGDLLLIAVAKRLERMTT 549

Query: 168 TPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226
             M + RL G+EF       +++ +   +A+ + + + N    I +   + I+ S GIA 
Sbjct: 550 PNMKLARLAGDEFTILIENYNKRPDVKKMADTIVEAM-NEPFEIENQH-LQISPSIGIAI 607

Query: 227 RCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                E   +I+  AD A+Y AK  G+N    ++
Sbjct: 608 YPEAGEDPLSILQHADMAMYEAKNRGKNGSSLYT 641


>gi|83643269|ref|YP_431704.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631312|gb|ABC27279.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 462

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 9/176 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQIND 144
           EL  +  ++ +++  D L+ + N   FI                 ++   DID FK +ND
Sbjct: 286 ELQKANAKLEKMAFFDPLTNIPNRRYFIDQTNKLMKFCNRRGLVFALGLIDIDNFKILND 345

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
           ++GH  GD V+  L+      F +   + R GGEEFA A   ++E +A  +   L   I 
Sbjct: 346 SYGHDGGDIVLKELARYFYGFFRSDDAICRYGGEEFAFAMALNNESDADKVTLRLLMGIR 405

Query: 205 NSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
           +  I I+S   + IT S G+   +  H   +  II +AD+ALY +K+ G+N+V  +
Sbjct: 406 DLTIQINSDVVLSITTSIGVKLVDASHHLDLKDIINQADRALYQSKREGKNKVTIY 461


>gi|26989960|ref|NP_745385.1| GGDEF domain-containing protein [Pseudomonas putida KT2440]
 gi|24984877|gb|AAN68849.1|AE016517_9 GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 522

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 11/180 (6%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQ 141
           I + L  ++  +  L+  D L+GL N                     L++V  D+DYFK 
Sbjct: 333 IERALLQAHQTLKALALTDSLTGLGNRRRLDGVFEPELRRARRQGYPLALVMLDLDYFKA 392

Query: 142 INDNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            ND++GHP GD+ +   ++ L            R GGEEF      +  + A +L  +L+
Sbjct: 393 YNDHYGHPAGDQCLRRFAEVLQQALKRPADLAVRYGGEEFTLLLPDTDGRGAELLVQELQ 452

Query: 201 KIIENSQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +++    +  ++ P   ++ SAGIA          I  ++  AD ALY AK+ GR+    
Sbjct: 453 QLLRRQALEHAASPLGRVSFSAGIAVVDLAREGGTIEALVAAADGALYQAKQQGRDGYCV 512


>gi|103485521|ref|YP_615082.1| diguanylate cyclase [Sphingopyxis alaskensis RB2256]
 gi|98975598|gb|ABF51749.1| diguanylate cyclase [Sphingopyxis alaskensis RB2256]
          Length = 584

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 80/171 (46%), Gaps = 8/171 (4%)

Query: 94  FISYNRISQLSRIDCLSGLLNHSAFISS----LGSY---NEKLSIVFFDIDYFKQINDNF 146
             +  R   L+R D L+GL N   FI S    L      N   +++  DID FK IND  
Sbjct: 396 RDAEARAQTLARRDPLTGLANRRGFIDSVTPLLDRARVGNLPAALLLVDIDRFKSINDIH 455

Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206
           GH  GD V+  +  ++    G    V RLGGEEF    +G      +  A  +R+ + + 
Sbjct: 456 GHEAGDAVLCTIGQRIERWEGPMCTVARLGGEEFGLLTIGMEGIVLSRFAESIRRGLADC 515

Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             ++  G    +T S G+AE         +   AD+ALY AK+ GRNRV+ 
Sbjct: 516 DHSVIVGDR-PVTASIGVAEVRPACDFKQLYRVADEALYDAKRGGRNRVIV 565


>gi|167624977|ref|YP_001675271.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167354999|gb|ABZ77612.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
          Length = 518

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 81/174 (46%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143
           KE      +++ L   D L+ L N SA    +           + L +   DID+FK IN
Sbjct: 347 KERLFEQQKLNLL---DSLTQLPNRSALEERMDIEYRNYKRTKQPLWVAVADIDHFKTIN 403

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+FGH  GDK +  ++  L        FV R GGEEF       +E +   L N +R+ +
Sbjct: 404 DSFGHSTGDKTLQVIAMALKSALRESEFVARYGGEEFVLLLPDVAESDIQPLLNRVREKV 463

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           ++      +   I +T+S G A+    E I+    RAD ALY AK   R+RV+ 
Sbjct: 464 KSIPFKFKN-QRITVTVSIGAAQIIENELITETFDRADAALYKAKNESRDRVII 516


>gi|323964628|gb|EGB60101.1| GGDEF domain-containing protein [Escherichia coli M863]
          Length = 404

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 88/180 (48%), Gaps = 10/180 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +        N K+ +V+ D+D FK
Sbjct: 219 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFK 278

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + R GG+EF   A  +S+     +A+ + 
Sbjct: 279 KVNDAYGHLFGDQLLREVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRI- 337

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++ + S GI+    H    + II  AD A+Y AK+ GR +   F
Sbjct: 338 --LTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVF 395


>gi|304409180|ref|ZP_07390801.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|307303183|ref|ZP_07582938.1| diguanylate cyclase [Shewanella baltica BA175]
 gi|304353001|gb|EFM17398.1| diguanylate cyclase [Shewanella baltica OS183]
 gi|306913543|gb|EFN43965.1| diguanylate cyclase [Shewanella baltica BA175]
          Length = 726

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 11/182 (6%)

Query: 87  GSILKELFISYNRISQLSRIDCLSGLLNHSA------FISSL-GSYNEKLSIVFFDIDYF 139
               ++L  +  ++  L+  D L+ L N          I  +     + +++   D+D+F
Sbjct: 541 QQRTQDLEAANVKLKDLAERDPLTNLYNRRYTEHQFPLIQQMCERGQDAMTLAILDLDHF 600

Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           KQIND +GH  GD+ +  +++ L  +F      + R GGEEF       +  +     N+
Sbjct: 601 KQINDTYGHLGGDECLKEVAELLTSLFKRDIDLISRYGGEEFLLILPMCNALKVEAHLNE 660

Query: 199 L-RKIIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             +++ E   IN     S ++T S G  IA   + + +   + +AD  LY+AK+ GR+RV
Sbjct: 661 FKQQLAETVIINPQDNRSFNVTASIGAVIANATYSDSLEHWLKQADNNLYLAKEQGRDRV 720

Query: 256 VC 257
           VC
Sbjct: 721 VC 722


>gi|154685373|ref|YP_001420534.1| YhcK [Bacillus amyloliquefaciens FZB42]
 gi|154351224|gb|ABS73303.1| YhcK [Bacillus amyloliquefaciens FZB42]
          Length = 359

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 62/192 (32%), Positives = 102/192 (53%), Gaps = 12/192 (6%)

Query: 77  TISLLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAFIS--------SLGSY 125
            IS L G +S  I+K   +  + + +    +  D L+G+ N   F          +  S 
Sbjct: 162 LISTLGGMLSLYIIKHEADARLLFKQYKFQANYDFLTGIFNKRKFEEVSRVLYDRASQSP 221

Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185
           + +L++++ DID+FKQIND +GH  GD+V+  L  +L ++  +     R+GGEEFA    
Sbjct: 222 SSQLALIYLDIDHFKQINDQYGHYEGDQVLKELGARLRLLLSSSDPSARIGGEEFAVLMP 281

Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244
             +  +   LA ++R  I+ + I ++SG +I +T+S GIA    +     T+   AD+ L
Sbjct: 282 NCTYTKGLHLAEEIRHTIDANPILLTSGDTIPVTVSLGIAHYPTNTSDPQTLPLIADRML 341

Query: 245 YVAKKSGRNRVV 256
           Y AK SGRN+V 
Sbjct: 342 YKAKTSGRNQVC 353


>gi|126664503|ref|ZP_01735487.1| putative diguanylate cyclase (GGDEF) with HAMP domain [Marinobacter
           sp. ELB17]
 gi|126630829|gb|EBA01443.1| putative diguanylate cyclase (GGDEF) with HAMP domain [Marinobacter
           sp. ELB17]
          Length = 445

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 80/181 (44%), Gaps = 11/181 (6%)

Query: 82  LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFF 134
           L Y    + +++      +  L+R+D L+GL N  +               N    +++ 
Sbjct: 258 LKYSRDELEQKIAERTTDLHSLARVDSLTGLCNRRSLDEILEVEIQRASRRNAGFGVMWL 317

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194
           DID+FK IND+ GH  GD+V+   +  L          GR GG+EF              
Sbjct: 318 DIDHFKAINDSLGHQTGDEVLCQAALWLQYSLRPYDQPGRWGGDEFMVVLSPCDHNILRF 377

Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254
           L+  LR+  E      S+  +I IT+S G       +   TI++ ADQALY AK  GRN 
Sbjct: 378 LSERLRQTFERE----SANGNIPITVSVGAYLCQPGDSAKTILHEADQALYQAKARGRNT 433

Query: 255 V 255
           V
Sbjct: 434 V 434


>gi|123440455|ref|YP_001004449.1| RNase II stability modulator [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087416|emb|CAL10197.1| putative signalling protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 664

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFK 140
           SG+ + +   +  R+  L+  D ++GL N  A    + S  +      + I++ D+D FK
Sbjct: 218 SGTDITKERRAQERLRILANTDMITGLPNRHAIHERINSAIQTRGDSSVGIIYLDLDNFK 277

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND++GH  GD+++  +S  ++   G    + RLGG+EF      ++     I    + 
Sbjct: 278 KVNDHYGHMFGDRLLKDVSLAILSCLGDNEMLARLGGDEFIVLVENATLDLLEITTQRI- 336

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             +   ++    G   ++   S GIA    H + +  II  AD A+Y AK+ G+     F
Sbjct: 337 --LNRMKLPFRIGLIEVYTGCSIGIALCPEHGDTLENIIRSADTAMYTAKEHGKQTYSIF 394

Query: 259 SDIENN 264
           S   N 
Sbjct: 395 SQQMNK 400


>gi|89098948|ref|ZP_01171828.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89086352|gb|EAR65473.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 574

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 101/223 (45%), Gaps = 23/223 (10%)

Query: 53  IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112
           +G+      +    E   L+I+ I  S     I      E   +Y R  + S    L+ L
Sbjct: 356 VGVLLLASRKKRAYEKYQLMIVDILCSHFAVAI------ENARNYERTKENSERCALTKL 409

Query: 113 LNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164
            N+  F   LG             LS++  DID+FK +ND FGH  G++++  L+++L +
Sbjct: 410 YNYRYFDVLLGEEFIRMESGKRSVLSLIILDIDHFKSVNDTFGHQSGNEILIELAERLSL 469

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-------SIH 217
           +      V R GGEEF      + +QEA  LA  +R  I      I+          S+ 
Sbjct: 470 LTEPYGTVARYGGEEFVVLLPDAEKQEALELAEVIRLAIATQPFTITQHMDGDGSRLSVS 529

Query: 218 ITISAGIAERC-HKEPISTIIYRADQALYV-AKKSGRNRVVCF 258
           IT S G+A      +    +I  AD+ALYV AK++GRNRV  +
Sbjct: 530 ITASIGVASAPVDADDPLALIRHADRALYVGAKRAGRNRVAEY 572


>gi|85711994|ref|ZP_01043048.1| Signaling protein with a ligand binding sensor domain, GGDEF and
           EAL domains [Idiomarina baltica OS145]
 gi|85694180|gb|EAQ32124.1| Signaling protein with a ligand binding sensor domain, GGDEF and
           EAL domains [Idiomarina baltica OS145]
          Length = 741

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/261 (24%), Positives = 109/261 (41%), Gaps = 32/261 (12%)

Query: 9   LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68
           L +W+   +  E        + F+  F   + T++F       YI     Y  + +   N
Sbjct: 234 LHVWMTPARLAEERQGLALTLLFTGLFITAMLTLVF-------YIVAQSRYKAQQLADAN 286

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125
           + L                S + E       I+ L+  D L+ L+N +A +  L  +   
Sbjct: 287 IELY---------------SEIDERERVEKEIAYLAEHDALTRLINRNALMRILSEWLAD 331

Query: 126 ---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
              N   +I+F D+D FK++ND  GH VGD++I  ++ ++  +      + R GG+EF  
Sbjct: 332 DAKNGLTAILFIDLDRFKEVNDALGHTVGDELIKRVARRIKKLAPNEAVLARSGGDEFLL 391

Query: 183 AALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRA 240
           A    +S +    LA+ L + ++           + I+ S GIA     +     +I  A
Sbjct: 392 AVPHSTSREHILTLADQLLQALDAH--FYVDEYELFISASIGIAFAEDADNNPEYLIRNA 449

Query: 241 DQALYVAKKSGRNRVVCFSDI 261
           D ALY AK +GRN    +S  
Sbjct: 450 DTALYQAKDNGRNTYHIYSQA 470


>gi|327440733|dbj|BAK17098.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Solibacillus silvestris
           StLB046]
          Length = 582

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 93/190 (48%), Gaps = 14/190 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---------KLSIVFFDIDY 138
           + L E  I  + + + S  D L+ + N  A+I  + +  E         + +++F D+D 
Sbjct: 131 TDLSERKIVEDELEKRSLHDSLTEVCNRFAYIERMKALLEVTENQMTPIQHAVLFIDLDR 190

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAN 197
           FKQ+ND  GH +GD+++  +S ++  +      + R GG+EF          +EAA  A 
Sbjct: 191 FKQVNDMLGHAIGDQLLIEVSKRVKALVKNKDILARFGGDEFVITLANIQHPREAAKFAE 250

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256
            + ++ E + I +     ++I+ S GI+           ++ RAD+A+  +K +GRN   
Sbjct: 251 QVLRVFE-APIKVHD-QDVYISTSMGISIYPADGTTTEQLLNRADRAMSFSKDNGRNCYS 308

Query: 257 C-FSDIENNT 265
             F ++E ++
Sbjct: 309 FYFDELETDS 318


>gi|270264657|ref|ZP_06192922.1| putative sensor protein [Serratia odorifera 4Rx13]
 gi|270041340|gb|EFA14439.1| putative sensor protein [Serratia odorifera 4Rx13]
          Length = 1112

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 13/187 (6%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVF 133
           ++L  ++ S  +EL     ++S  +  D L+GL N ++F   L +        ++ ++VF
Sbjct: 666 MVLQDVTAS--RELM---RKLSYSASHDALTGLPNRTSFEKRLKAAIAGAGEKQQHALVF 720

Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
            D+D FK +ND+ GH  GD ++  ++  +         + RLGG+EF         ++A 
Sbjct: 721 LDLDRFKAVNDSAGHAAGDALLRDIAQLMKHHLRNSDCLARLGGDEFGLILFDCQREQAK 780

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGR 252
            L   L   I         G   H+  SAGI            ++ +AD A Y AK  GR
Sbjct: 781 SLTQQLVSHISQHPF-FWEGKIYHVGASAGITHIDAASGNSGELLAQADIACYTAKHRGR 839

Query: 253 NRVVCFS 259
            +V  + 
Sbjct: 840 GQVYLYE 846


>gi|258514041|ref|YP_003190263.1| diguanylate cyclase [Desulfotomaculum acetoxidans DSM 771]
 gi|257777746|gb|ACV61640.1| diguanylate cyclase [Desulfotomaculum acetoxidans DSM 771]
          Length = 236

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/195 (32%), Positives = 99/195 (50%), Gaps = 20/195 (10%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128
           + LV + I    + G + G I+  L+       + + +D L+GL N + F   L +  +K
Sbjct: 37  IYLVFLFIFFQTIAGLVLGRIINNLY-------KQAYVDFLTGLYNKNYFNKKLTNELKK 89

Query: 129 -------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
                  LS++  DID FK INDN+GH +GDKVI+ L++ L         + R GGEEF 
Sbjct: 90  TQNSNSVLSLLIIDIDNFKGINDNYGHVMGDKVISALTNVLRQNLRGVDILSRWGGEEFT 149

Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241
                ++ + AA  A  LR IIE++ +         +T+S G+A          ++ +AD
Sbjct: 150 VILPETNTEGAAASAERLRNIIEDTNLFCG-----KVTVSIGVASTNGHIDKDILVAQAD 204

Query: 242 QALYVAKKSGRNRVV 256
           +ALY AK+  RN VV
Sbjct: 205 KALYKAKEK-RNTVV 218


>gi|157372974|ref|YP_001480963.1| RNase II stability modulator [Serratia proteamaculans 568]
 gi|157324738|gb|ABV43835.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Serratia proteamaculans 568]
          Length = 664

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 10/186 (5%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140
           SG+ + E   +  R+  L+  D ++GL N +A    +           + +V+ D+D FK
Sbjct: 218 SGTDITEERRAQERLRVLANTDIITGLPNRNAIQDKITQSIATRDGHSVGLVYLDLDNFK 277

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           ++ND +GH  GD+++  +S  ++        + RLGG+EF   A  +  +    LA  + 
Sbjct: 278 KVNDAYGHMFGDRLLVEVSLAVLGCLDNDQTLARLGGDEFLVLAQQADREMLQRLAQRI- 336

Query: 201 KIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             I+  +     G   ++   S GIA    H   + ++I  AD A+YVAK+ G+     F
Sbjct: 337 --IDRLKTPFRIGLIEVYTGCSIGIALCPEHGNDLDSLIRSADTAMYVAKEHGKRTYTVF 394

Query: 259 SDIENN 264
           S   N 
Sbjct: 395 SPEMNK 400


>gi|85859312|ref|YP_461514.1| PAS sensory box/GGDEF family protein [Syntrophus aciditrophicus SB]
 gi|85722403|gb|ABC77346.1| PAS sensory box/GGDEF family protein [Syntrophus aciditrophicus SB]
          Length = 300

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 8/165 (4%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           + + +  D L+ L N +   + L               I+F DID+FK+ ND +GH VGD
Sbjct: 136 LEKKAFYDNLTRLANRNCVENELQIRFEEQKRLGVSFGILFMDIDHFKEFNDTYGHDVGD 195

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
            V+ F++D LV        +GR GGEEF       + +   IL N LR +IEN+ I + +
Sbjct: 196 LVLRFVADTLVKNARPSDLIGRWGGEEFIGILRNVTHENLEILGNRLRVLIENAYITLKT 255

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +H++IS G       +   T++ RAD  LY +K+ GRN +  
Sbjct: 256 -EQLHVSISVGATLMLDNDSSDTLLKRADMLLYESKRRGRNCLTI 299


>gi|77465114|ref|YP_354617.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Rhodobacter sphaeroides 2.4.1]
 gi|77389532|gb|ABA80716.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Rhodobacter sphaeroides 2.4.1]
          Length = 772

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 11/183 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143
           + L  S      L+  D L+G+ N + F   L             ++++  D+D FK +N
Sbjct: 332 RRLHQSEEEARYLAMHDPLAGIPNRTLFEDRLDQALKAERRGGPPVALLCLDLDRFKAVN 391

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKI 202
           D  GH  GD++I  ++ +L         V RLGG+EF    +G +S++      + L  +
Sbjct: 392 DTMGHQAGDELIRQMAARLRSHVRETDTVARLGGDEFGVILIGMASDETLGRYCSGLVHL 451

Query: 203 IENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +  +  ++  G  + I  S G             I+  AD ALY AK  GR R    +  
Sbjct: 452 LA-APCDLKCGQ-VQIGASIGAVRAASVDGGREAILRSADTALYRAKAEGRGRYCIATPE 509

Query: 262 ENN 264
            N+
Sbjct: 510 MND 512


>gi|260464385|ref|ZP_05812576.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum
           WSM2075]
 gi|259029855|gb|EEW31140.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum
           WSM2075]
          Length = 690

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 62/217 (28%), Positives = 98/217 (45%), Gaps = 19/217 (8%)

Query: 62  EYILVENLSLVIISITISLLLGY-----ISGSILK---ELFISYNRISQLSRIDCLSGLL 113
           E +L  + +L   ++ + LL+       +S +IL+   EL  + N ++ ++  D L+GL 
Sbjct: 199 EKLLSLHRTLFYATLGVILLVALFIFRPMSNAILRKTHELVDARNSMAFIAVHDGLTGLH 258

Query: 114 NHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N +                 E+L++V  D+D FKQIND  GH  GD V+   + ++    
Sbjct: 259 NRTFLTDHFETLIKGAHRRRERLAVVQLDLDRFKQINDTLGHAAGDYVLVITAQRMRDSC 318

Query: 167 GTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225
                  RLGG+EF     G+ S ++  +LA  +   I    I    G +I    SAGIA
Sbjct: 319 RASDLCARLGGDEFVMILNGAGSTEDINMLARRILAHINEPIIF--QGTTILPGASAGIA 376

Query: 226 ERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
                 +    ++  AD ALY AKK G      FS+ 
Sbjct: 377 VYPIDADNAQDLLVHADLALYSAKKMGGGNFSFFSEE 413


>gi|269925324|ref|YP_003321947.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269788984|gb|ACZ41125.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 718

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 11/194 (5%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFF 134
           LL G +    + E  ++   + + +  D L+GL N       L        +  ++++F 
Sbjct: 271 LLTGTV--QDVTEQKVNEESLLRQALHDPLTGLPNRVMLGQQLEKLLASNRSRSIAVLFL 328

Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAA 193
           D+D FK +NDN GH  GD ++  ++ +L        F  R GG+EF        S     
Sbjct: 329 DLDNFKAVNDNLGHQAGDSLLVAVARRLSANLRPTDFAARFGGDEFTVVVTKVKSIDYVV 388

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGR 252
            +A  + + I  SQ    +G  ++ + S GIA     ++  S+++ +AD ALY +K  GR
Sbjct: 389 SIAKRIIESI--SQPFDIAGERVYTSTSIGIALCSSSEDSASSLLRKADIALYKSKSLGR 446

Query: 253 NRVVCFSDIENNTC 266
              V F        
Sbjct: 447 GTYVIFDQSMEQEA 460


>gi|218133232|ref|ZP_03462036.1| hypothetical protein BACPEC_01097 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992105|gb|EEC58109.1| hypothetical protein BACPEC_01097 [Bacteroides pectinophilus ATCC
           43243]
          Length = 352

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 113/233 (48%), Gaps = 20/233 (8%)

Query: 29  IYFSIF-FSIFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYIS 86
           +  SI  F IFI+  ++ A+       ++P Y G+E ++ E +         + L+G+ S
Sbjct: 122 LLLSILDFVIFISCKVYSAD------DISPVYVGMESVIHEGMYTFNAFCVFTALIGF-S 174

Query: 87  GSILKELFISY-------NRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDI 136
              LKEL  S+        ++ +++++D L+GL N      F+           I   DI
Sbjct: 175 VIFLKELNRSHDEIIKVNEQLGRMAKLDTLTGLFNRRGIQPFLDICSVSGRNFCIAMCDI 234

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D FK +ND++GH VGD+VIA  +  +         V R GGEEF      +   +  I+A
Sbjct: 235 DDFKNVNDSYGHDVGDEVIARTARTIRECIKPDDHVCRWGGEEFVFLVDSAQMHDGYIIA 294

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           +++R+ IE + + I  G  +  T++ GI E    E I   I RAD+ +Y  K+
Sbjct: 295 DNIRRTIEQNPLEIF-GKIVDFTVTIGITEYKKGETIDQTIIRADEMMYSGKR 346


>gi|146339697|ref|YP_001204745.1| hypothetical protein BRADO2694 [Bradyrhizobium sp. ORS278]
 gi|146192503|emb|CAL76508.1| Conserved hypothetical protein; putative membrane protein; Putative
           diguanylate cyclase (GGDEF domain) [Bradyrhizobium sp.
           ORS278]
          Length = 407

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 11/187 (5%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFD 135
            +    +L  +  +     + +R D L+GL N +  I +L S            ++++ D
Sbjct: 197 AFRLNKMLVAVMHAKRESDEQARRDPLTGLKNRAGLIDALQSRLDGKVSGQRGFAVLYLD 256

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS--EQEAA 193
           +D FK +ND FGH  GD+++  +   L  + G    + R+GG+EF   +  +      A 
Sbjct: 257 LDGFKPVNDTFGHAAGDELLKIVGRTLKDIVGPSDVIARIGGDEFVVLSTSTDPALDHAL 316

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGR 252
            L+  L + +  + I +  G  + I +S GI A   H     ++++ AD ALY AK SG+
Sbjct: 317 ALSERLIEAM-TAPILLPGGARVDIGMSIGIAAAPDHGIEPESLLFAADAALYEAKASGK 375

Query: 253 NRVVCFS 259
           +     S
Sbjct: 376 SCWRLAS 382


>gi|110681326|ref|YP_684333.1| EAL/GGDEF/PAS domain-containing protein [Roseobacter denitrificans
           OCh 114]
 gi|109457442|gb|ABG33647.1| EAL/GGDEF/PAS domain protein [Roseobacter denitrificans OCh 114]
          Length = 687

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 10/209 (4%)

Query: 59  YGLEYILVENLSLVIISITISLLLGYISGSILKELFI--SYNRISQLSRIDCLSGLLNHS 116
           Y ++  +   +SL    +  + +   ++ S   +  I  +       +R D L+ L N  
Sbjct: 199 YWIKLSIAPLISLRTGELRFTAIATDVTESKEAQHAISDAKRETEHQARHDPLTALPNRR 258

Query: 117 AFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172
                L S         +++  D+D+FK +ND  GH  GD V+  +++ L    G     
Sbjct: 259 YLDEVLESEVCNSAAPRTLIRVDLDHFKNVNDTLGHAAGDFVLVEVANCLRRSIGPSDLA 318

Query: 173 GRLGGEEFAAAA-LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231
            R+GG+EF     +    + A  L   LR  ++     +  G +  I  S GIA      
Sbjct: 319 ARVGGDEFVILLAVDGDTRAATALTEKLR--VQLGTDMVFEGRTCRIGASFGIATASEGL 376

Query: 232 -PISTIIYRADQALYVAKKSGRNRVVCFS 259
                ++  AD ALYVAK +GRN    ++
Sbjct: 377 VGNEDLLKSADAALYVAKDTGRNTTTLYT 405


>gi|262171783|ref|ZP_06039461.1| GGDEF family protein [Vibrio mimicus MB-451]
 gi|261892859|gb|EEY38845.1| GGDEF family protein [Vibrio mimicus MB-451]
          Length = 439

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 106/245 (43%), Gaps = 19/245 (7%)

Query: 21  SFSPHTFMIYFSIFFSIFIAT-VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS 79
            F  +   I+       +IA   +F+A + ++         LE  +  N    +++    
Sbjct: 196 QFGEYQLTIHQVELIGDYIAGEKLFLAMLIMWAATGAWLSVLE--IRRNRREALLARMRQ 253

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIV 132
             L  ++ S    L     +  +++  D L+G +N       L            + S++
Sbjct: 254 EHLQRLNHS----LHEQNMKYVEMAHRDALTGAINRHGIRDWLQEQARLVRWQLSQFSVL 309

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
           F DIDYFKQ+ND +GH +GD ++   +  +         + R GGEEF      +  ++A
Sbjct: 310 FIDIDYFKQVNDVYGHGLGDDLLREFALVINREIRESDRLVRWGGEEFVVFCAQTGIEQA 369

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             LA  LR  +EN            +T S GI++    E I+  + RAD+ALY AK+ GR
Sbjct: 370 VELAERLRLRVENHSWIHGDE----LTCSIGISQM-EDERITETVSRADEALYRAKRLGR 424

Query: 253 NRVVC 257
           NR+  
Sbjct: 425 NRIEV 429


>gi|251788178|ref|YP_003002899.1| diguanylate cyclase [Dickeya zeae Ech1591]
 gi|247536799|gb|ACT05420.1| diguanylate cyclase [Dickeya zeae Ech1591]
          Length = 381

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/216 (31%), Positives = 106/216 (49%), Gaps = 23/216 (10%)

Query: 55  LTPFYGLEYILV---ENLSLVIISITISL---LLGYISGSILKELFISYNRISQLSRIDC 108
           L+P  G+  +L    E ++L  IS+ I++   LL  ++   L EL  +       +R D 
Sbjct: 155 LSPAPGVGTLLTSSPEIITLGCISLMIAVMGSLLSLVAKKYLIELPTT-------ARYDD 207

Query: 109 LSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+G L   AF       + +    N  L  +  DID+FKQ+ND+ GH  GDK +  ++D 
Sbjct: 208 LTGFLRRDAFYQLSQRALKTADQENSPLCAMLIDIDHFKQVNDSLGHAAGDKALKAVADI 267

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
           +   F     + RLGG+EFA      +++ A  +A  +R+ I       +S  S  I++S
Sbjct: 268 IRHSFRNRDIICRLGGDEFAVVLPNITQENAIRVAERVREGIYEFG-QSASSISPGISVS 326

Query: 222 AG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            G +A     E +  II RAD  LY AK++ RN  +
Sbjct: 327 IGLVAAELPDEELDEIIRRADVNLYRAKRT-RNCTI 361


>gi|170077969|ref|YP_001734607.1| sensory box/GGDEF family protein [Synechococcus sp. PCC 7002]
 gi|169885638|gb|ACA99351.1| sensory box/GGDEF family protein [Synechococcus sp. PCC 7002]
          Length = 780

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 12/178 (6%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKL-----SIVFFDIDYFKQIN 143
           +      R+ Q +  D L+GL N S     L       ++      +++F D+DYFK IN
Sbjct: 603 DRKQIEQRLVQEAFYDHLTGLPNRSLLEERLEQVIKQQQRYPQHHNALLFLDLDYFKAIN 662

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKI 202
           D  GH VGD+++   + ++         + RLGG+EF       +E Q A  ++  + K 
Sbjct: 663 DRLGHLVGDQLLQDFAKRICHCLRDVDTLARLGGDEFVVLLTEITEPQTAFEVSQRIHKA 722

Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259
           ++       +G S+ + +S G+  +  +    + I+  AD A+Y AK  GR R   F 
Sbjct: 723 LQT--PFELAGQSLFVKVSIGVLPKLDRYLTATGILRDADLAMYHAKAKGRARSEVFE 778


>gi|167922268|ref|ZP_02509359.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei BCC215]
          Length = 688

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/215 (29%), Positives = 98/215 (45%), Gaps = 15/215 (6%)

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRIS----QLSRIDCLSGLLNHSAFIS 120
           L   ++L  ++I I  L+          L  S +R+S    +++  D L+ L N      
Sbjct: 214 LAATVALFTVAILIVALILSHFDVRTTLLAGSVSRLSGQIVRMTAFDTLTDLPNRRTLNE 273

Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
            LG           KL+I+F D+D FK IN + GHP GD+V+   S +L+        V 
Sbjct: 274 HLGRALAAARARGGKLAILFMDLDGFKTINGSLGHPAGDEVLKTFSQRLLRCVRDGDIVA 333

Query: 174 RLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           RLGG+EF       SS+ EAA +A ++ + +   + N   G  + +T S GIA      +
Sbjct: 334 RLGGDEFVVLLESVSSDDEAARVARNVLERMRKGRWN--DGQVLQVTPSIGIALYPKDGD 391

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266
              T++  AD A+Y AK+ GR     F    +   
Sbjct: 392 TADTLLRHADAAMYAAKRGGRCTYRFFEATMDEAA 426


>gi|152968104|ref|YP_001363888.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216]
 gi|151362621|gb|ABS05624.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216]
          Length = 490

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 83/190 (43%), Gaps = 16/190 (8%)

Query: 70  SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128
            L   S+ +  L+      +L++L     R+  ++R D L+GL N       L       
Sbjct: 298 WLAAGSLALVALVVARVWDLLQQLRRQSQRLEAMARTDPLTGLANRRTLDHHLARVCRPG 357

Query: 129 ----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184
               + +   D+D+FK  ND+ GH  GD ++   S       G    + R GGEEF A  
Sbjct: 358 TPGEVVLALLDLDHFKAYNDSRGHQAGDDLLRAASAAWTAHLGPRGLLARWGGEEFVAVV 417

Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244
           +  S + A  L ++LR ++   Q           T S G++     EP +  + RAD  L
Sbjct: 418 VDESVERATALLDELRALVPEGQ-----------TCSVGVSRWDRAEPPAEALRRADAFL 466

Query: 245 YVAKKSGRNR 254
           Y AK +GR+R
Sbjct: 467 YAAKAAGRDR 476


>gi|288573467|ref|ZP_06391824.1| response regulator receiver modulated diguanylate cyclase
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569208|gb|EFC90765.1| response regulator receiver modulated diguanylate cyclase
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 293

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 22/182 (12%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDID---------- 137
           S+ K +     +++  +  D L+ LLN  A    L     +        D          
Sbjct: 118 SVAKRILDLQEKLAFFANHDQLTNLLNRHALFERLSGEMARA-------DREGTSLSLGL 170

Query: 138 ----YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193
               +FK+IND +GH  GD+V+  ++  L         VGR GGEEF     G+S +E  
Sbjct: 171 LDLDHFKRINDTYGHLAGDRVLRSIAKILCRELRPYDVVGRYGGEEFVMILPGASSEEGY 230

Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253
            + + +RK I +  + +     + +T+S G+AE      +  +I RAD+A+Y AK +GR+
Sbjct: 231 RILDRVRKRIGDRPLKVDDDQ-VELTVSMGLAEYRQGMTMDGLIARADEAMYRAKDAGRD 289

Query: 254 RV 255
           +V
Sbjct: 290 KV 291


>gi|254430065|ref|ZP_05043772.1| PAS fold family [Alcanivorax sp. DG881]
 gi|196196234|gb|EDX91193.1| PAS fold family [Alcanivorax sp. DG881]
          Length = 864

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 77/189 (40%), Gaps = 7/189 (3%)

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-GSYNEKLS----IVFFDID 137
             +    +        ++   +  D L+GL N   F ++L  S +E  +    + F D+D
Sbjct: 404 AVMVFRDVTSRRAMQKKLRYHATHDALTGLTNRREFENTLQESLDEPGAEHSMLCFIDLD 463

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND  GH  GD ++   +  +         V RLGG+EF         Q A  +A 
Sbjct: 464 RFKVVNDTAGHVAGDALLRECARVIGRQVREGDVVARLGGDEFGLLLRHCPAQRAIQIAE 523

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            L   + + +          I  SAG+ +       +   + RAD A Y AK  GRNRV 
Sbjct: 524 RLIGALGDIRFAWKESL-YDIGASAGLVQLDANVITVEEAMSRADVACYAAKHRGRNRVS 582

Query: 257 CFSDIENNT 265
            ++  ++  
Sbjct: 583 VYTPDDSEA 591


>gi|241203375|ref|YP_002974471.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240857265|gb|ACS54932.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1059

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 78/176 (44%), Gaps = 10/176 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL +  NRI   S  D L+ L N      +L           +K SI+  D+D FK IND
Sbjct: 620 ELELVKNRIEHNSLHDPLTALANRRKLDIALESLTHDGRQQRQKFSILHIDLDRFKDIND 679

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD ++   S  L         V R+GG+EF   AL   ++E A L+  + +  E
Sbjct: 680 TLGHAAGDAMLVHASKVLAKNVRGSDIVARIGGDEFVILALDVGDKEMAQLSTRIIE--E 737

Query: 205 NSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             Q     G S    +S GIA           ++  AD ALY AK +GRNR   F+
Sbjct: 738 MRQPIDFQGFSCRCGVSIGIALANGIHVDARKVLINADIALYRAKSTGRNRFEFFN 793


>gi|153000750|ref|YP_001366431.1| PAS/PAC sensor-containing diguanylate cyclase [Shewanella baltica
           OS185]
 gi|151365368|gb|ABS08368.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica OS185]
          Length = 345

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 103/240 (42%), Gaps = 40/240 (16%)

Query: 58  FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117
           +  L   +  N  +VI+   I+ L       +   L  +   +++L+  D L+G+ N   
Sbjct: 105 WLQLSEQVYHNGDMVIVCTDITHL-----KQVEFALRNAQTELNRLALTDELTGIANRRH 159

Query: 118 FISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170
           F   L    ++LS       +V  DID FK +ND +GH VGDK++   +  +        
Sbjct: 160 FFQQLEHEIKRLSRLQLPLCLVMMDIDNFKLVNDRYGHQVGDKILQHFTQFISARTRPYD 219

Query: 171 FVGRLGGEEFAAAALGSSEQEAAILA---------NDLRKIIENSQINISSGPS------ 215
             GRLGGEEFA     ++   A  +           D+  I+ + Q   S+G S      
Sbjct: 220 IFGRLGGEEFALLLPETTVDAAQKIVTRMMSSLANEDISAIVADFQYQFSAGVSALTPVI 279

Query: 216 IHITI--SAGIAERCH-----------KEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           IH  I  SA IA+              +     ++  AD+ALY AK  GRNRVV + D+ 
Sbjct: 280 IHHGIDNSADIADVEQVALPVETGSQCRSDAEKLVAEADKALYQAKTLGRNRVVIWDDVM 339


>gi|116250781|ref|YP_766619.1| GGDEF/EAL transmembrane sensory box protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115255429|emb|CAK06505.1| putative GGDEF/EAL transmembrane sensory box protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 1046

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 10/176 (5%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144
           EL +  NRI   S  D L+ L N      +L           +K SI+  D+D FK IND
Sbjct: 607 ELELVKNRIEHNSLHDPLTALANRRKLDIALESLTHDGRQQRQKFSILHIDLDRFKDIND 666

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD ++   S  L         V R+GG+EF   AL   ++E A L+  + +  E
Sbjct: 667 TLGHAAGDAMLVHASKVLAKNVRGSDIVARIGGDEFVILALDVGDKEMAQLSTRIIE--E 724

Query: 205 NSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             Q     G S    +S GIA           ++  AD ALY AK  GRNR   F+
Sbjct: 725 MRQPIDFQGFSCRCGVSIGIALANGIHVDARKVLINADIALYRAKSMGRNRFEFFN 780


>gi|330807167|ref|YP_004351629.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375275|gb|AEA66625.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 897

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 8/184 (4%)

Query: 89  ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQIN 143
            + +  ++  RI +L+  D L+ L N  AFI +L        +  +S++  DID FK+IN
Sbjct: 454 DITQTKLAQQRIERLAYTDNLTNLGNRPAFIRNLDERFARDSDSPISLLLVDIDNFKRIN 513

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GDK++  L+ +L         + R    EFA     +S +    +A+ L   +
Sbjct: 514 DSLGHQTGDKLLISLARRLRNSLSPSGSLARFASNEFAVLLDDTSLEAGQQIASQLLMTL 573

Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
           +           I +T S G+A    H     T++  A  AL+ AK +G+++V  F++  
Sbjct: 574 DKPMF--VDNQLISVTGSVGLACAPLHGRDPQTLMRNAGLALHKAKANGKHQVQVFTEAL 631

Query: 263 NNTC 266
           N   
Sbjct: 632 NAEA 635


>gi|157374558|ref|YP_001473158.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157316932|gb|ABV36030.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 581

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 108/245 (44%), Gaps = 21/245 (8%)

Query: 32  SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISI---------TISLLL 82
           S    IFIA V++   I+L          ++ ++  + ++  I+          T +L L
Sbjct: 326 SFVILIFIAGVLYTFFIWLTNWHFISKGIIQPVIATSNAMQAIASEKTDTPLPKTNNLEL 385

Query: 83  GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFD 135
             +  S+   L     ++  +S ID L+G  N   F   L    +        LSI+ FD
Sbjct: 386 QQMVSSLET-LKSYAAQVKAISEIDGLTGAFNRRYFDLRLDQALQSAHNTPHPLSIILFD 444

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAI 194
           +D FKQ ND +GH  GD+ +  +S  +  +         R GGEEF      +    A  
Sbjct: 445 VDNFKQFNDRYGHVSGDQCLKQISASMKAMPELQNKIFARYGGEEFIVFLPYTDATLAKE 504

Query: 195 LANDLRKIIENSQINISSG-PSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSG 251
           +A  +RK I + QI         HIT+S G+      +     +II +ADQALY AK++G
Sbjct: 505 IAELMRKKIFHLQIPHEDSVHRQHITVSIGVCTTVPNNDTTTESIIIQADQALYEAKQAG 564

Query: 252 RNRVV 256
           +N V 
Sbjct: 565 KNCVR 569


>gi|307316675|ref|ZP_07596118.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83]
 gi|306897873|gb|EFN28616.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83]
          Length = 564

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 76/167 (45%), Gaps = 9/167 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +   +  D L+GL N   F   L          +L+++  D+D FK IND  GH  GD V
Sbjct: 131 LLHQATHDVLTGLPNRRQFSDQLRGALPVPNGARLALMQIDLDDFKPINDTLGHGAGDAV 190

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSG 213
           +   +D++  V     F  RL G+EFA     + +  EA  LA+ L    +  +     G
Sbjct: 191 LKMAADRIRSVLRDREFAYRLAGDEFAVIQWRADQPSEAERLADALINAFK--EPFTVEG 248

Query: 214 PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++ +  S GIA        +  ++  AD ALY AKK GR R   F+
Sbjct: 249 INVFVGASVGIAVAPGDGNEVEQLMKAADIALYAAKKDGRGRSSTFT 295


>gi|262168543|ref|ZP_06036239.1| sensory box/GGDEF family protein [Vibrio cholerae RC27]
 gi|262023072|gb|EEY41777.1| sensory box/GGDEF family protein [Vibrio cholerae RC27]
          Length = 568

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 18/187 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL--SIVFFDI 136
           S   +       NR+ +LS  D L+ L N   F  ++         Y ++    +   DI
Sbjct: 387 SFVDISHRKALENRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDI 446

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND FGH  GD V+  ++  +        F+ R+GGEEFA     +S +EA  + 
Sbjct: 447 DHFKRINDKFGHNEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVL 506

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           N +R       ++I+S     +T+S G+ + C          RAD ALY +K SGRN++ 
Sbjct: 507 NRVR-------LHIASLHHQQVTLSGGVTDVC--TSPDQSYKRADLALYESKTSGRNQIS 557

Query: 257 CFSDIEN 263
             + +E 
Sbjct: 558 VLTAMEM 564


>gi|27367394|ref|NP_762921.1| GGDEF domain-containing protein [Vibrio vulnificus CMCP6]
 gi|27358963|gb|AAO07911.1| FOG: GGDEF domain protein [Vibrio vulnificus CMCP6]
          Length = 337

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/237 (29%), Positives = 111/237 (46%), Gaps = 11/237 (4%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLFYIGLTP----FYGLEYILVENLSLVIISITISLLLG 83
           ++   +++ +    V F A   LF I +      FY  +Y   + L+++I        + 
Sbjct: 105 LVLPIVYYLLLGYKVGFAATACLFLIQIVNITYQFYLEQYF--DMLTMMINFAFCYFSIA 162

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFK 140
            I+         + N++S+L+ +D L+G  N  A      +L +      ++  DID+FK
Sbjct: 163 AIAHVYEFNRVSTENKLSKLATLDPLTGTNNRLALKHRYQALKTQGTAFFLLVLDIDHFK 222

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND +GH  GD V+  +   +  V G    V R GGEEF     G S Q A   A  +R
Sbjct: 223 AINDEYGHDGGDCVLRSVVKTMAHVVGEEN-VFRQGGEEFCILLAGVSHQHALKTAETIR 281

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           + I ++ I+   G  I +T+S G+AE      +  I  +AD  LY AK  GRNRVV 
Sbjct: 282 QNIGDTPIHYREGA-ISVTVSIGLAEAHASSCVDEINRQADANLYDAKSQGRNRVVA 337


>gi|87119333|ref|ZP_01075231.1| sensory box sensor/GGDEF/EAL domain protein [Marinomonas sp.
           MED121]
 gi|86165724|gb|EAQ66991.1| sensory box sensor/GGDEF/EAL domain protein [Marinomonas sp.
           MED121]
          Length = 672

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 85/185 (45%), Gaps = 10/185 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140
           S +         I   +  D L+GL N + F   +            + ++++ D+D FK
Sbjct: 235 SDITHQKARLEAIEFRANFDHLTGLPNRAYFHELMANQLVKSCKEKSQCALMYLDLDNFK 294

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND  GH VGD ++  +S  +  V G    + RLGG+EF         ++ + L    +
Sbjct: 295 RINDTLGHSVGDSLLKEVSQVISKVIGAKNTLARLGGDEFVVMVPC--FKQISELEEVAQ 352

Query: 201 KIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            I++  ++    G + +H   S GIA   + E +  I+  +D A+Y AK+ G+ R V  +
Sbjct: 353 AIVDALKVPFVIGANLVHTGASIGIALSRNVESVEEILRLSDLAMYKAKEQGKGRFVFHT 412

Query: 260 DIENN 264
              ++
Sbjct: 413 GQMSD 417


>gi|83859367|ref|ZP_00952888.1| GAF sensor diguanylate cyclase [Oceanicaulis alexandrii HTCC2633]
 gi|83852814|gb|EAP90667.1| GAF sensor diguanylate cyclase [Oceanicaulis alexandrii HTCC2633]
          Length = 341

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 79/174 (45%), Gaps = 8/174 (4%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144
            L +    +   +  D L+G++    +       I      +  L I  FDID FK+IND
Sbjct: 156 RLVVDELELRIQAGSDQLTGVMARRHWVSMVKEEIQRAARNSNLLCIALFDIDRFKRIND 215

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
            +GH VGD+VI  +             +GR+GGEEFA      +  +A + A   R+ IE
Sbjct: 216 AYGHAVGDQVIRNVIATCKHELRAGSKLGRIGGEEFAILFTECALDQAVVAAERCRRAIE 275

Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
              +    G  I IT S G+A    +      +I  AD+ALY AK  GRNRV  
Sbjct: 276 RLTLTAPDGEDIEITASFGVAPLFSYALSPDELIELADRALYQAKSGGRNRVEV 329


>gi|332531213|ref|ZP_08407126.1| diguanylate cyclase [Hylemonella gracilis ATCC 19624]
 gi|332039320|gb|EGI75733.1| diguanylate cyclase [Hylemonella gracilis ATCC 19624]
          Length = 527

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 23/191 (12%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142
           L++L     R+S   R D L+G LN      +           +  L +   DID FK++
Sbjct: 336 LRKLQAELERLSAQVRHDGLTGALNRQGLDEAFVRELSTVRRKDAPLCVALLDIDNFKRL 395

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD  +  L             + R GGEEF      +  ++A  +   L++ 
Sbjct: 396 NDARGHETGDVALQHLVAVAKENLRPQDTLARYGGEEFVILLPETGLEQAMEVMIRLQRE 455

Query: 203 IENS----------------QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246
           +                   ++  +    I IT SAG+A+    E     ++RADQA+Y+
Sbjct: 456 LSKRFFLARPKQGVKTESGGEVASADQEKIFITFSAGVAQLTVDETAEQALHRADQAMYL 515

Query: 247 AKKSGRNRVVC 257
           AK++G+NRVV 
Sbjct: 516 AKRAGKNRVVA 526


>gi|296135644|ref|YP_003642886.1| diguanylate cyclase [Thiomonas intermedia K12]
 gi|295795766|gb|ADG30556.1| diguanylate cyclase [Thiomonas intermedia K12]
          Length = 546

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 82/176 (46%), Gaps = 8/176 (4%)

Query: 90  LKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQI 142
           ++ L     ++SQ  + D L+G LN            S +    + L++   D+D+FK +
Sbjct: 346 IRSLEGELEQVSQQLQEDPLTGALNRRGLDAEFTRMQSRVVRQGQPLTLALLDLDHFKAV 405

Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202
           ND  GH  GD V+  L  Q   +      V R+GGEEF      +  Q++ ++   L   
Sbjct: 406 NDTHGHDTGDAVLKALVAQAKRLIRPSDRVARMGGEEFMLLLPDTPVQQSLVVVQRLLVA 465

Query: 203 IENSQ-INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
             +   +  S+G  I ++ SAG+AE C  E    I  R D AL  AK++GR RV  
Sbjct: 466 FSDQTLVQDSTGRRIPLSFSAGVAELCPDEDFPAIYQRVDAALLQAKQAGRKRVEF 521


>gi|94266037|ref|ZP_01289757.1| PAS:GGDEF:EAL [delta proteobacterium MLMS-1]
 gi|93453397|gb|EAT03822.1| PAS:GGDEF:EAL [delta proteobacterium MLMS-1]
          Length = 751

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 11/210 (5%)

Query: 64  ILVENLSLVIISITISLLLGYI-SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122
           +  E LS+  +S        Y+   + L +L  S  ++  L+  D L+ L N     S L
Sbjct: 286 VYPEWLSISGVSDARGQTSYYVGVFTDLSQLKQSEAKLESLAYYDPLTALPNRLLLHSRL 345

Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
                    +  K+ + F D+D F+ +N++  +  GD+++  +S + +        + R 
Sbjct: 346 EHALEWAERHQTKVGVYFIDLDQFRVVNESLSYQAGDQLLVMVSKRFLSCLRVDDTLARP 405

Query: 176 GGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPI 233
           GG+EF       +  QEA   A +L   ++     +  G  I++  S GI          
Sbjct: 406 GGDEFVLIQEALADPQEATETARELLASLDQ-PFQLDGGQEIYLGASIGITVFPGDGTTP 464

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263
             ++  A+ A+Y AK++GRNR   +++  N
Sbjct: 465 PDLLKNAEAAMYHAKENGRNRFSFYAEQMN 494


>gi|16264177|ref|NP_436969.1| hypothetical protein SM_b20447 [Sinorhizobium meliloti 1021]
 gi|15140302|emb|CAC48829.1| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021]
          Length = 564

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 77/167 (46%), Gaps = 9/167 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +   +  D L+GL N   F   L          +L+++  D+D FK IND  GH  GD V
Sbjct: 131 LLHQATHDVLTGLPNRRQFSDQLRGALPVPNGARLALMQIDLDDFKPINDTLGHGAGDAV 190

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSG 213
           +   +D++  V     F  RL G+EFA     + + +EA  LA+ L    +  +     G
Sbjct: 191 LKMAADRIRSVLRDREFAYRLAGDEFAVIQWRADQPREAERLADALINAFK--EPFTVEG 248

Query: 214 PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
            ++ +  S GIA        +  ++  AD ALY AKK GR R   F+
Sbjct: 249 INVFVGASVGIAVAPADGNEVEQLMKAADIALYAAKKDGRGRSSTFT 295


>gi|126172549|ref|YP_001048698.1| diguanylate cyclase [Shewanella baltica OS155]
 gi|125995754|gb|ABN59829.1| diguanylate cyclase [Shewanella baltica OS155]
          Length = 389

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 109/238 (45%), Gaps = 15/238 (6%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIG--LTPFYGLEYILVENLSLVIISITISLLLGYIS 86
           +  ++   +     IFI  IF+  +    +P +   +   E + ++   + ++LL+  + 
Sbjct: 154 VAIAMVMPLVAMVGIFIIRIFIALLSPEESPMFIAMHT-HEAIPVLWFYVFLTLLINIVM 212

Query: 87  -GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDY 138
            G+ +  L    ++I  L+  D L+GL N  A    L + ++         S++  D+D+
Sbjct: 213 IGNAMTRLV---SKIRMLAERDQLTGLWNRRAMHKFLNNIHQRWLRDNVPYSMILLDLDH 269

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND +GH  GD  +   +     V      + R GGEEF      +    A  +A  
Sbjct: 270 FKEINDQYGHDAGDLALLTAARLFGSVLRENDALCRHGGEEFLVILPATDAPAARAVAEK 329

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           L ++++++   I  G +I I  S G A          ++ +ADQA+Y AK  GR+R+ 
Sbjct: 330 LHQVLKDNSF-IWQGVTIKIHASLGYATIYQGCQPDKLLIQADQAMYRAKSEGRDRIC 386


>gi|224368704|ref|YP_002602865.1| putative signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223691420|gb|ACN14703.1| putative signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 493

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 58/189 (30%), Positives = 83/189 (43%), Gaps = 20/189 (10%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
           ++L E+     ++  L+ ID L+GL N   +   L             L++V  DID+FK
Sbjct: 301 ALLIEIGQKNLQLEALTLIDYLTGLYNRKYYTERLKETLRICNREKRILAVVMMDIDHFK 360

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVV---FGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            +ND  GH  GD+ +  +   L           F  R GGEEF     G++       AN
Sbjct: 361 SVNDKHGHAAGDECLRMIGQVLKTALKKTRPGDFAARYGGEEFVLIFSGANADWVEKKAN 420

Query: 198 DLRKIIENSQINI----SSGPSIHITISAGIAERCHKEPISTII------YRADQALYVA 247
           ++RK I+   +N          I ITIS G A +        ++       RAD  LY A
Sbjct: 421 EIRKTIQAQTVNTMNNREEKIEISITISMGFACKGPIFDDEIMLSPEIMTRRADTMLYKA 480

Query: 248 KKSGRNRVV 256
           K+ GRNRVV
Sbjct: 481 KQLGRNRVV 489


>gi|153803816|ref|ZP_01958402.1| sensory box/ggdef family protein [Vibrio cholerae MZO-3]
 gi|124120648|gb|EAY39391.1| sensory box/ggdef family protein [Vibrio cholerae MZO-3]
          Length = 255

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 18/187 (9%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL--SIVFFDI 136
           S   +       NR+ +LS  D L+ L N   F  ++         Y ++    +   DI
Sbjct: 74  SFVDISHRKALENRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDI 133

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK+IND FGH  GD V+  ++  +        F+ R+GGEEFA     +S +EA  + 
Sbjct: 134 DHFKRINDKFGHNEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVL 193

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           N +R       ++I+S     +T+S G+ + C          RAD ALY +K SGRN++ 
Sbjct: 194 NRVR-------LHIASLHHQQVTLSGGVTDVC--TSPDQSYKRADLALYESKTSGRNQIS 244

Query: 257 CFSDIEN 263
             + +E 
Sbjct: 245 VLTTMEM 251


>gi|160874516|ref|YP_001553832.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160860038|gb|ABX48572.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|315266755|gb|ADT93608.1| diguanylate cyclase [Shewanella baltica OS678]
          Length = 518

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 11/174 (6%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143
           KE      +++ L   D L+ L N +A    +         +   L +   DID+FK IN
Sbjct: 347 KERLFEQQKLNLL---DSLTQLPNRAALEERMDLEYRNYQRHKSPLWVAVADIDHFKTIN 403

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+FGH  GDK +  ++  L        FV R GGEEF       +  + A L N +R+ +
Sbjct: 404 DSFGHSTGDKTLQVIAMALKNSLRDTEFVARYGGEEFVLLLPDVAPADIAQLLNRVREKV 463

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           +N      +   I +T+S G A+    E I     RAD ALY AK   R+RVV 
Sbjct: 464 KNIPFKFKN-QRITVTVSIGAAQVMGSELIHETFERADAALYKAKHESRDRVVI 516


>gi|94501116|ref|ZP_01307639.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Oceanobacter sp. RED65]
 gi|94426692|gb|EAT11677.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Oceanobacter sp. RED65]
          Length = 308

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 13/193 (6%)

Query: 76  ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128
           +T  LL   I  SI  E     N++  ++ ID L+ L N + F+  L         Y  K
Sbjct: 110 MTPGLLSRCIRFSI--ERHNLINKLQNMALIDPLTLLSNRADFMQKLEHHLEYSLRYQTK 167

Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188
           L++   D+D FKQ+ND  GH  GD+V+   S +L         + RLGG+EF    LG  
Sbjct: 168 LALCMVDLDGFKQVNDTLGHRAGDQVLQQFSTRLKQRLRKSDVLARLGGDEFVILMLGVG 227

Query: 189 EQEAAILA--NDLRKIIENSQINISSG-PSIHITISAGIAERCHK-EPISTIIYRADQAL 244
           ++E+++ A    ++ + E   I +      I + +S GI            +++ ADQA+
Sbjct: 228 DEESSMQAAKEKMQAVAEPFLIYMDGQVHDIQLGMSIGICISGGTISTPDKLLHCADQAM 287

Query: 245 YVAKKSGRNRVVC 257
           Y  KKSG+N +  
Sbjct: 288 YQVKKSGKNNIAL 300


>gi|99078114|ref|YP_611372.1| diguanylate cyclase/phosphodiesterase [Ruegeria sp. TM1040]
 gi|99035252|gb|ABF62110.1| diguanylate cyclase/phosphodiesterase [Ruegeria sp. TM1040]
          Length = 700

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 109/268 (40%), Gaps = 26/268 (9%)

Query: 14  CHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG-LEYILVENLSLV 72
            ++     ++    ++  ++     +A   FI         LT     +E I   +    
Sbjct: 167 VNQDARRRYAKQVVIVLVTMIGIFLVAGSAFIGFGGQLVRSLTQLAAAMERIRAGDFDTP 226

Query: 73  IISITISLLLGYIS------GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY- 125
           +  +     +G I+       S L++L  +   I  L+  D L+ L N  A    L    
Sbjct: 227 LSDLQRRDEVGKIARGVADFSSTLRDLSEAKTHIEHLALHDQLTDLPNRRALQDYLERSV 286

Query: 126 ------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179
                 N + +++  D+D FKQIND  GH  GD+++   ++ +    G      R+GG+E
Sbjct: 287 EQARDSNARHAVLHVDLDRFKQINDLMGHAAGDQILLHAAEAMQRQIGPDDMTARVGGDE 346

Query: 180 FAAAALG-----SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PI 233
           F     G      ++  A  +  ++ K +E        G  +++  S GIA     E   
Sbjct: 347 FVIVLRGHGTDSKTKAIAKRVIEEISKPVE------IEGEFVNVGASIGIAYLAAGETDP 400

Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDI 261
           + I+  AD ALY+AK  GR RV  ++D 
Sbjct: 401 ARILSNADIALYIAKSEGRGRVSFYNDA 428


>gi|318041969|ref|ZP_07973925.1| sensory box/GGDEF family protein [Synechococcus sp. CB0101]
          Length = 393

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 13/177 (7%)

Query: 93  LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQIND 144
           L      ++  + +D L+G+ N   F   L    ++          +   D+D FK+IND
Sbjct: 195 LQSENRLLATAALVDALTGIANRRGFEQELEHRWQRFQHASTSALVLCLLDLDGFKEIND 254

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             GH  GD+++  ++ +L        FV RLGG+EF       +++ +   A   R ++ 
Sbjct: 255 TLGHEAGDQLLITVAQRLRCSLRDSDFVARLGGDEFVLLLDQRTDRGSVETALQ-RLVVA 313

Query: 205 NSQINISSGPSIHITISAGIAERCHKEPI----STIIYRADQALYVAKKSGRNRVVC 257
            ++  I +   + +T S G       +      + ++  ADQA+Y AK+SG+NR   
Sbjct: 314 IAEPMIYADTHMRVTASLGCVVIRSNDTSQPSEAELLRCADQAMYAAKRSGKNRWRL 370


>gi|296134546|ref|YP_003641788.1| 7TM domain sensor diguanylate cyclase [Thiomonas intermedia K12]
 gi|295794668|gb|ADG29458.1| 7TM domain sensor diguanylate cyclase [Thiomonas intermedia K12]
          Length = 591

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 123/295 (41%), Gaps = 35/295 (11%)

Query: 1   MTRSLKDFLSIWLCHEKNLES----FSPHTFMIYFSIFFSIFIATVIF------------ 44
           +   +  +L+I L     L +      P   +   S+    + A V +            
Sbjct: 287 LALQIVQWLAITLAVAVLLPNSEWLLVPAQLIAAASLVLIAWAAAVRWQQRFMPAIILLL 346

Query: 45  ----IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI 100
               +  +    IG T  +  E  L  + +L  + + ++L+L Y     + +L     R+
Sbjct: 347 SLFPLLIVGFANIGRTLGWLPETFLTSD-ALQWVLVFLALVLTYGLSVRVAQLRERATRL 405

Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDK 153
             L   D L+GLLN +    S     ++        ++++ D+D  K+IND FGH  GD 
Sbjct: 406 QDLLLKDPLTGLLNRNGLFDSGQRQLDRTQDSQAFAAVLWLDLDGLKRINDQFGHAAGDA 465

Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQINIS- 211
           +I   S +L   FG      RLGG+EFA             LA DL R  +E  +   + 
Sbjct: 466 LIQATSARLREAFGPDAVCARLGGDEFAVVLPNLPSP---RLAEDLARHALERLRAPYAL 522

Query: 212 SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF-SDIENN 264
           SG     + S G+A    H + +  ++  AD A+Y AK  GR+  V + SD+E +
Sbjct: 523 SGREFRASGSIGVALYPSHAQTLEELLRLADVAMYRAKALGRDTYVVWESDMEAD 577


>gi|134095840|ref|YP_001100915.1| hypothetical protein HEAR2672 [Herminiimonas arsenicoxydans]
 gi|133739743|emb|CAL62794.1| Hypothetical protein; putative exported protein; putative PAS and
           GGDEF domains [Herminiimonas arsenicoxydans]
          Length = 708

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 93/188 (49%), Gaps = 14/188 (7%)

Query: 80  LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132
           L + ++    + E  +    ++ ++  D L+ L N  A +  L           + L+++
Sbjct: 524 LFIAFLH--DITERQLLQATLTNMALKDALTDLPNRRALMQKLPEAIVRAARLGKPLAVL 581

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQE 191
           F D+D FK IND +GH  GD+++  +  ++V V      V RL G+EF     + + + +
Sbjct: 582 FIDLDGFKGINDGYGHEAGDELLRTMGQRIVGVVRATDTVVRLAGDEFVVVLEMLNGDAD 641

Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKK 249
           A  +A+ + + I+  Q  + S  ++ ++ S GIA    ++      +I  AD A+Y AKK
Sbjct: 642 ALEVADKILQAIQ--QPFVLSAATVTLSGSIGIAMHWPQDLTHAEQLITLADGAMYAAKK 699

Query: 250 SGRNRVVC 257
            G+NR V 
Sbjct: 700 QGKNRAVA 707


>gi|104783790|ref|YP_610288.1| diguanylate cyclase [Pseudomonas entomophila L48]
 gi|95112777|emb|CAK17505.1| putative diguanylate cyclase (GGDEF domain)/response regulator
           [Pseudomonas entomophila L48]
          Length = 538

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 8/176 (4%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140
           + ++        +      D L+GL NH+  +              + LS    DID+FK
Sbjct: 360 TTVRNRAARARHLKARMVRDSLTGLYNHTHILQLLEDCSFRARREEQPLSFAMLDIDHFK 419

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
           +IND  GHP+GD+VI  L+  L        ++GR GGEEFA     ++ + A  + +++R
Sbjct: 420 KINDRHGHPMGDRVIKSLALFLKQRLRKTDYIGRYGGEEFAIVMPNTALEAAHKVLDEIR 479

Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           +         +    +  T SAG+ +        T+   AD+ALY AK +GRN VV
Sbjct: 480 RRFAEIHYP-AQPHDLQCTFSAGVVQLDDNLDALTMASAADEALYRAKHAGRNCVV 534


>gi|27365688|ref|NP_761216.1| GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|320156095|ref|YP_004188474.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
 gi|27361836|gb|AAO10743.1| GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|319931407|gb|ADV86271.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
          Length = 371

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 9/173 (5%)

Query: 91  KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143
           ++L  +  ++  LS  D L+ L N    I +L          +  L  +  D DYFKQ+N
Sbjct: 193 RQLVEANKQLEVLSYTDALTQLPNRRCAIQTLKELWNDSSLADAPLVCIMIDADYFKQVN 252

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D+ GH  GD V+  L+  L   F +   V RLGG+EF      +       +A  +R+ +
Sbjct: 253 DSCGHEAGDVVLKELAHTLKHSFRSDDIVCRLGGDEFLVICPNTDLAGGLHVAELVRQQV 312

Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255
            N  I     P    +IS G+AER       + +I  AD ++Y +K  G+N V
Sbjct: 313 NNLLIPTGLEPWRG-SISVGVAERTPAMSTYTELIQFADDSVYRSKHHGKNCV 364


>gi|254421849|ref|ZP_05035567.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196189338|gb|EDX84302.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 615

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 77/190 (40%), Gaps = 11/190 (5%)

Query: 85  ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDID 137
           +    + E  +   R++     D L+ L N S F  SL         +  +  +   D+D
Sbjct: 395 VIFHDVTEERMKAKRLAWQVSHDPLTHLYNRSKFQQSLNEIIEDAHTHKSQHVLCCMDLD 454

Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197
            FK +ND  GH  GD  +  ++        +   + RLGG+EF       +   A  + N
Sbjct: 455 NFKSVNDTCGHAAGDLFLQQIAHLWRSKIRSSDLLARLGGDEFGLILYDCNLASALKITN 514

Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256
            L + + + +  +      ++ +S G+A           ++  AD A Y AK  GRNRV 
Sbjct: 515 ALCESLRSFRF-VYEHKVFNVGVSIGVAPITRDTRGAEEVLRLADGACYEAKNKGRNRVQ 573

Query: 257 C--FSDIENN 264
              F  +E N
Sbjct: 574 VHNFDPLETN 583


>gi|134093755|ref|YP_001098830.1| putative signaling protein [Herminiimonas arsenicoxydans]
 gi|133737658|emb|CAL60703.1| conserved hypothetical protein; putative GGDEF domain
           [Herminiimonas arsenicoxydans]
          Length = 258

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 65/183 (35%), Positives = 89/183 (48%), Gaps = 13/183 (7%)

Query: 84  YISGSILKELFIS--YNRISQL-------SRIDCLSGLLNHSAFISSLGSYNE--KLSIV 132
            I+ S  KEL ++    ++ QL       +R D L+G+LN  A       Y +   LS++
Sbjct: 52  LIARSDRKELELNTLNFKLEQLTSELDYKARHDNLTGVLNRGAVFDQAEHYLKSNPLSLI 111

Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192
             DID+FK+IND FGHP GD V+  L  +L         +GR+GGEEF       S  +A
Sbjct: 112 VLDIDFFKRINDEFGHPTGDAVLRELVKKLKSSLNGVGEIGRVGGEEFTVLLPNISLDDA 171

Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
             +A ++R  I          P  H+T S GI+             RAD ALY AK +GR
Sbjct: 172 IEIAENVRLAIAAETFTCF--PRPHVTASFGISWSDTNCDFENAYGRADAALYKAKHNGR 229

Query: 253 NRV 255
           NRV
Sbjct: 230 NRV 232


>gi|146309930|ref|YP_001175004.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter sp. 638]
 gi|145316806|gb|ABP58953.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter sp. 638]
          Length = 468

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/215 (31%), Positives = 106/215 (49%), Gaps = 13/215 (6%)

Query: 55  LTPFYGLEYILVENLSLVIISITISLLLGYI--SGSILKELFISYNRISQLSRIDCLSGL 112
           L   Y    +  +   L I+   I L  G I   G  + E   +  +++  +  D L+G 
Sbjct: 250 LKDMYEWHPLRKDGSQLTILWSNILLPDGSILNIGLDITERKKAERQLALRATTDDLTGC 309

Query: 113 LNHSAFISSLGSYNE---------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163
            N SA +  L +  E            ++ FD+DYFKQIND +GH VGD  + +  D+L 
Sbjct: 310 FNRSAILQKLQAATEQHQPSETGSPFCVLMFDLDYFKQINDEWGHQVGDAALVYFCDRLR 369

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223
            +      +GR+GGEEF      +  Q A  L+  LR  + +  + +    S+ ++ SAG
Sbjct: 370 ELSPRLSALGRVGGEEFLLLLTQADSQAAMALSTLLRSSLFDRPMRVED-KSLVLSFSAG 428

Query: 224 IAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257
           + E CH +   S+++ RAD+ALY AK+SGR + V 
Sbjct: 429 VVEVCHGQRDTSSLLTRADKALYDAKRSGRGKTVI 463


>gi|91223416|ref|ZP_01258681.1| putative GGDEF family protein [Vibrio alginolyticus 12G01]
 gi|91191502|gb|EAS77766.1| putative GGDEF family protein [Vibrio alginolyticus 12G01]
          Length = 306

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 54/180 (30%), Positives = 81/180 (45%), Gaps = 8/180 (4%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136
            I    +         +   S+ID L+ + N   F   L          N   +++ FD+
Sbjct: 121 LILTRNISNRHRVETLLRHQSQIDALTNIYNRRVFFEKLTEEVIKAQEPNYHSALLLFDL 180

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196
           D+FK IND  GH  GD V+  L+D +  +        R+GGEEFA     +S   A  + 
Sbjct: 181 DFFKVINDKRGHDAGDYVLETLADLVSHLLVKDEIFARVGGEEFAIILPETSLSAAKEVG 240

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            ++R  I+N Q        I +T+S G+ E    E    +   AD+ALY AK++GRN V 
Sbjct: 241 EEVRSHIQNCQFEF-EKIEIPVTVSVGVVEIGRNETTKRLYAHADKALYAAKRNGRNCVA 299


>gi|86358628|ref|YP_470520.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|86282730|gb|ABC91793.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
          Length = 783

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 14/184 (7%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140
           + + EL  S +R  + +  D L+GLLN   F       I++  +  ++L+ +F D+D FK
Sbjct: 332 TDVTELKASEDRNHRQAITDHLTGLLNRQGFEAVLDNKIAAADAAGQELACLFVDLDRFK 391

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199
            INDN GH  GD+ +  L ++L           RLGG+EFA        E+ A  +   +
Sbjct: 392 WINDNMGHAAGDRALIELVERLKTHLAPSDEAARLGGDEFAILLPAKDAEKRAKAMCEQI 451

Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
             I E         P +H++ S GI+    H    + ++ ++D A+Y  K+ G+N    F
Sbjct: 452 ASIFET-----PFAPDMHLSASIGISIYPHHAATAAELLQKSDMAMYAKKRDGKNGAQLF 506

Query: 259 SDIE 262
               
Sbjct: 507 DKAM 510


>gi|330817899|ref|YP_004361604.1| Diguanylate cyclase/phosphodiesterase [Burkholderia gladioli BSR3]
 gi|327370292|gb|AEA61648.1| Diguanylate cyclase/phosphodiesterase [Burkholderia gladioli BSR3]
          Length = 783

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 100/208 (48%), Gaps = 12/208 (5%)

Query: 62  EYILVENLSLVIIS-ITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNH---- 115
           +Y    N+ L++ S IT+++L  + ++  ++ +L      ++QL+  D L+GL N     
Sbjct: 289 DYNHTRNVYLLMTSFITLAMLAFFGVATGLIGKLLGREREMTQLAEYDLLTGLANRYTTL 348

Query: 116 SAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173
               + +      ++L+I+F D+D FK +ND  GH  GD V+   + +L         + 
Sbjct: 349 RGLRNDVAQPSSLKRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVEAEGTLA 408

Query: 174 RLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKE 231
           R+GG+EF     G   E+ A  LA  + ++    +     G +  +  S GIA      E
Sbjct: 409 RIGGDEFVVVVKGDDAERRAVRLAESVIRMF--GKPFDVRGSTFVLHASIGIALHSVANE 466

Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259
               ++ +AD A+Y AK +G+N    ++
Sbjct: 467 SEIDLLKKADLAMYSAKDAGKNCYQFYA 494


>gi|323488316|ref|ZP_08093564.1| diguanylate cyclase with PAS/PAC sensor [Planococcus donghaensis
           MPA1U2]
 gi|323397974|gb|EGA90772.1| diguanylate cyclase with PAS/PAC sensor [Planococcus donghaensis
           MPA1U2]
          Length = 678

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 11/186 (5%)

Query: 84  YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136
           +     + E     + I++++  D LSG+ N  +F   L          N+K++++  D 
Sbjct: 492 FTLARDVTERKRLQSDIAKMAFYDHLSGIPNRRSFDDKLEKAVLQANRTNKKIAVLMLDG 551

Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAIL 195
             FK+IND FGH  GD VI  ++ +L           RLGG+E             A   
Sbjct: 552 RKFKKINDEFGHDAGDAVIKEMATRLQASIRPSDTAARLGGDEMGVILPEIDSIDVAVAT 611

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNR 254
           A  + K  E       +G  I +    GI+           +I  AD ALY AKK+ R+ 
Sbjct: 612 AEQILKSYETPVFF--NGQKITMGAGIGISIYPDDAANEKQLIKHADLALYEAKKANRDA 669

Query: 255 VVCFSD 260
              + +
Sbjct: 670 YCVYEE 675


>gi|117618369|ref|YP_855541.1| GGDEF family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559776|gb|ABK36724.1| GGDEF family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 384

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/214 (25%), Positives = 100/214 (46%), Gaps = 13/214 (6%)

Query: 56  TPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF--ISYNRISQLSRIDCLSGLL 113
            PF  + ++ V  L ++++     +L G+   ++ +E        ++  +++ D L+GL 
Sbjct: 170 VPFPAVHWMAVGCL-IIMLETGRRMLNGWFELAVSREHENLTLARQLDAMAKRDPLTGLA 228

Query: 114 NHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166
           N   F              + + +I+  D+D+FK+ ND++GH  GD  +  ++D L    
Sbjct: 229 NRRHFDNVGEQILQEARERHGEFAILLLDVDFFKRFNDHYGHLQGDNCLIAVADCLREAI 288

Query: 167 GTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGI 224
             P   V R GGEEF     G+     + +A  +   +    I +  S  S  +T+S GI
Sbjct: 289 RQPADVVARYGGEEFVLLLPGADALATSAIAKRIAAALAERGILHALSEVSDRVTVSQGI 348

Query: 225 AERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257
           A     +  I+ ++ RAD+ALY  K++GRN    
Sbjct: 349 ALWHGGQDGIADMLVRADEALYQVKEAGRNGYRL 382


>gi|50122546|ref|YP_051713.1| hypothetical protein ECA3625 [Pectobacterium atrosepticum SCRI1043]
 gi|49613072|emb|CAG76523.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 610

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 92/207 (44%), Gaps = 17/207 (8%)

Query: 60  GLEYILVENLSLVIISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAF 118
           G +  ++E L+ ++ ++ I      I   +L+ E       +   +  D L+GL N S+F
Sbjct: 409 GYDQTMIELLAPLVKTLGI-----IIHARLLEDERTQIEASLRFNAGHDFLTGLPNRSSF 463

Query: 119 ISSL---------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169
                          + +K  +   DID FK IND FGH  GD V+  L+  + +     
Sbjct: 464 FEQASAFFLLRQQNQHADKSCLAIIDIDLFKNINDQFGHLAGDAVLKELAMLMRMSLRQE 523

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229
             V R+GGEEF         Q A +    +RK IE   +      +++ TISAGIA    
Sbjct: 524 DLVARIGGEEFIILLKDVPYQTAVMAIERIRKAIEQHTLEY-DRQNLNFTISAGIAAYRS 582

Query: 230 K-EPISTIIYRADQALYVAKKSGRNRV 255
               +   I  AD+ LY AK+ GRN V
Sbjct: 583 DLASVEDWIQLADENLYAAKRQGRNCV 609


>gi|303241279|ref|ZP_07327785.1| diguanylate cyclase/phosphodiesterase [Acetivibrio cellulolyticus
           CD2]
 gi|302591196|gb|EFL60938.1| diguanylate cyclase/phosphodiesterase [Acetivibrio cellulolyticus
           CD2]
          Length = 899

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 18/186 (9%)

Query: 92  ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----------SYNEKLSIVFFDIDYFK 140
           +L  S  ++ QL+  D L+GL N S F + L            +  E  +++  D+D FK
Sbjct: 444 QLLQSEQKLQQLAYYDNLTGLPNRSNFTNHLKLIIEDKKQSESNNIEDTAVIMIDLDRFK 503

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILA 196
           Q+ND  GH  GD ++  +++++            F+ RLGG+EF     G +  E   +A
Sbjct: 504 QVNDTMGHAAGDLLLNSVAERMNKALSGLDSNNFFIARLGGDEFVTVLNGLNMSEIESVA 563

Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255
             L   ++  +     G  + I  S GI+      + IS II  AD A+Y AK+ G N+ 
Sbjct: 564 ISLIDSLK--KPFWLEGKEVFIGGSLGISVYPYDGDGISDIIKNADIAMYSAKEHGGNKY 621

Query: 256 VCFSDI 261
             +S I
Sbjct: 622 CFYSQI 627


>gi|152997984|ref|YP_001342819.1| PAS/PAC and GAF sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
 gi|150838908|gb|ABR72884.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Marinomonas sp. MWYL1]
          Length = 1018

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 11/186 (5%)

Query: 88  SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140
             +        R+  L+  D L+ L N +  + SL             + ++F D+D FK
Sbjct: 573 RDMTRHVKLQERLKFLAYSDPLTSLYNRTYLMDSLISALLFATKQKTSVGLLFLDLDNFK 632

Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200
            IND  GH  GD+++  ++ +L+ V      + R GG+EF         +  + LA   +
Sbjct: 633 IINDTLGHKAGDELLCEVARRLIAVSDQFDVIARWGGDEFVFMMTKDVNE--SRLAKRAQ 690

Query: 201 KIIENSQINISSGPS-IHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258
           +I+E  +  ++       I  S GIA    +      +I +AD A+Y AK+ GR+    F
Sbjct: 691 QILEAMRAPVNLNEQYFTIPTSIGIAYTGEQSLDADRLIQQADIAMYWAKEKGRDNAQFF 750

Query: 259 SDIENN 264
           +   +N
Sbjct: 751 TPEMSN 756


>gi|254456946|ref|ZP_05070374.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
 gi|207085738|gb|EDZ63022.1| diguanylate cyclase [Campylobacterales bacterium GD 1]
          Length = 443

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 13/174 (7%)

Query: 93  LFISYNRISQ--LSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143
           L +    I    ++  D L+GL     F         S+   +  +S++  DIDYFK++N
Sbjct: 271 LMLQNKNIEYENIASTDALTGLYTRHKFFQLYLSSYTSMVQRHNYMSLILVDIDYFKKVN 330

Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203
           D +GH  GDK +  ++  L+ +      V R GGEEF      +  + A  +A  LR  I
Sbjct: 331 DVYGHNAGDKTLVQVAHTLLKILRNVDVVCRWGGEEFLIMLPTADMEHAIFIAQKLRVSI 390

Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
           E   I++      ++T S G+++    E +   I RAD+ALY+AK SGRN V C
Sbjct: 391 EELSIDVVG----NVTASFGVSQVREGEEMQDAIDRADKALYLAKDSGRNCVKC 440


>gi|261409758|ref|YP_003245999.1| diguanylate cyclase [Paenibacillus sp. Y412MC10]
 gi|261286221|gb|ACX68192.1| diguanylate cyclase [Paenibacillus sp. Y412MC10]
          Length = 370

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 113/225 (50%), Gaps = 16/225 (7%)

Query: 48  IFLFYIGLTPFYGLEYILVENLSL-VIISITISLLLGYISGSILKELFISYNRISQLSRI 106
           +F+ ++ +     +  +  + L + V+ ++ I +L  YI+ S   +LF+   ++ + +  
Sbjct: 145 LFIMWMNIPNHQKVFTVFTQQLVISVLATVVIYMLTEYINTS--NKLFL---QMKKNAET 199

Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N   F   L         ++E+L ++  DID+FKQIND +GH  GD V+  LS
Sbjct: 200 DYLTSLHNLRQFEQLLSERFLEAQHFSERLGVLVVDIDHFKQINDTYGHAAGDVVLQQLS 259

Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
             L     +   V R GGEEF+     ++  E A +A  +R  +E+    +  G  + IT
Sbjct: 260 KVLRDHSRSFDEVSRNGGEEFSVLVPEATIDETAAIAERIRAAVEDHVFTLEDGAKLRIT 319

Query: 220 ISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261
           +S G A        +    ++ +AD+ LY AK+SGRNRV    +I
Sbjct: 320 VSIGAAVHPDTIRSKNAKELLQQADRELYRAKESGRNRVCSAPEI 364


>gi|163853382|ref|YP_001641425.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163664987|gb|ABY32354.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 369

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 13/191 (6%)

Query: 86  SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----------GSYNEKLSIVFFD 135
           S S ++ L  +       S  D L+GL N   F  SL              +  S++  D
Sbjct: 174 SRSEIEALRETLEATRLESLTDALTGLGNRKNFEESLRKSVDRQSASAQQGKPASLIVID 233

Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAI 194
           ID FK+ ND +GH  GD+V+  ++  +    G     + R GGEEF      +   EA  
Sbjct: 234 IDSFKRFNDLYGHLTGDQVLRLVAIVMREHIGEKNATLARFGGEEFGIVLPETDRVEARA 293

Query: 195 LANDLRKIIENSQ-INISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252
           +A  +R  +   + +  S+G S+  +T+S G+A +   +   +++ RAD  L+ AK++GR
Sbjct: 294 IAERVRIGVTGRELVKRSTGESLGKVTVSLGVATQREDDNAVSLLERADACLFAAKRAGR 353

Query: 253 NRVVCFSDIEN 263
           NR +  +++EN
Sbjct: 354 NRTLDETEVEN 364


>gi|160873423|ref|YP_001552739.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|160858945|gb|ABX47479.1| diguanylate cyclase [Shewanella baltica OS195]
 gi|315265652|gb|ADT92505.1| diguanylate cyclase [Shewanella baltica OS678]
          Length = 389

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 109/238 (45%), Gaps = 15/238 (6%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIG--LTPFYGLEYILVENLSLVIISITISLLLGYIS 86
           +  ++   +     IFI  IF+  +    +P +   +   E + ++   + ++LL+  + 
Sbjct: 154 VAIAMVMPLVAMVGIFIIRIFIALLSPEESPMFIAMHT-HEAIPVLWFYVFLTLLINIVM 212

Query: 87  -GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDY 138
            G+ +  L    ++I  L+  D L+GL N  A    L + ++         S++  D+D+
Sbjct: 213 IGNAMTRLV---SKIRMLAERDQLTGLWNRRAMHKFLNNIHQRWLRDNVPYSMILLDLDH 269

Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198
           FK+IND +GH  GD  +   +     V      + R GGEEF      +    A  +A  
Sbjct: 270 FKEINDQYGHDAGDLALLTAARLFGSVLRENDALCRHGGEEFLVILPATDAPAARAVAEK 329

Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           L ++++++   I  G +I I  S G A          ++ +ADQA+Y AK  GR+R+ 
Sbjct: 330 LHQVLKDNSF-IWQGVTIKIHASLGYATIYQGCQPDKLLIQADQAMYRAKSEGRDRIC 386


>gi|90577454|ref|ZP_01233265.1| hypothetical GGDEF family protein [Vibrio angustum S14]
 gi|90440540|gb|EAS65720.1| hypothetical GGDEF family protein [Vibrio angustum S14]
          Length = 413

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/236 (26%), Positives = 104/236 (44%), Gaps = 39/236 (16%)

Query: 42  VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101
            +FI  +F F      F   +Y  + +++  I ++   LL+  IS S             
Sbjct: 195 AVFICLLFSFVT----FTFFQYTFISSVAFSIAAVL--LLINIISCS------------H 236

Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           +L+ ID L+ +    A  + L       ++   D+D+FK+ ND +GH  GD V+  ++  
Sbjct: 237 ELAFIDQLTEIPGRRALDNELKHLGRTYTLAMIDVDHFKKFNDKYGHDTGDDVLKLVATL 296

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS--------- 212
           +  + G    V R GGEEF     G S  E      +LR+ I   ++ I           
Sbjct: 297 MKDIDGGGN-VYRYGGEEFTILFKGKSIDECLPFLEELREKIAKYKMIIRDHDKRPTSNR 355

Query: 213 -----------GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
                        S+ +T+S G+AE   ++    ++ +AD ALY AK++GRNRV C
Sbjct: 356 AGSKARGQDKTSKSVKVTVSIGVAENYLEQEPEDVLKQADNALYQAKEAGRNRVQC 411


>gi|21231787|ref|NP_637704.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768087|ref|YP_242849.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21113497|gb|AAM41628.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573419|gb|AAY48829.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 414

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 9/168 (5%)

Query: 100 ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152
           +  L+  D L+GL N   F+         L S ++ ++    DID+FK IND +GH  GD
Sbjct: 248 LQDLATRDFLTGLPNRRYFLEQSQRVIPKLLSEDQTVTAAMLDIDHFKHINDTWGHEAGD 307

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  ++  +         V R GGEEF     G     A      LR+ I   ++ I  
Sbjct: 308 QALRAVAASVSGHARPQDLVARFGGEEFCLLVPGLDAANATGYFETLRERISALRVRIGD 367

Query: 213 GPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259
             ++ +T+S G+       + +  ++  AD+ LY+AK  GRN+V   S
Sbjct: 368 -ETLSMTVSIGVCIATQRDQSLHHLLGEADKYLYLAKAGGRNQVRLAS 414


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.178    0.583 

Lambda     K      H
   0.267   0.0546    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,799,922,235
Number of Sequences: 14124377
Number of extensions: 307736758
Number of successful extensions: 1537965
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 43527
Number of HSP's successfully gapped in prelim test: 6333
Number of HSP's that attempted gapping in prelim test: 1398351
Number of HSP's gapped (non-prelim): 57206
length of query: 266
length of database: 4,842,793,630
effective HSP length: 136
effective length of query: 130
effective length of database: 2,921,878,358
effective search space: 379844186540
effective search space used: 379844186540
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.6 bits)
S2: 81 (35.4 bits)